Organism name	Ensembl version	Gene name	Gene Ensembl ID	Transcript Ensembl IDs	Rank	Number of transcripts covered	Total number of transcript	Amplicon lenght	Chromosome	Fwd primer start	Fwd primer stop	Fwd primer sequence	# of SNPs in Fwd primer	Fwd primer Tm	Rev primer start	Rev primer stop	Rev primer sequence	# of SNPs in Rev primer	Rev primer Tm	Ensembl status	Warnings
Drosophila melanogaster	50	snoRNA:Me18S-A425	FBgn0086056	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR32329	FBgn0052329	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-4	FBgn0046821	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CR11700	FBgn0029856	FBtr0070931	3	1	1	60	X	6176780	6176798	AGTCGACCATTTACTTGGT		58	6176738	6176757	AGGGTCTTCACAAAGATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR32493	FBgn0052493	FBtr0070533	2	1	1	60	X	3321532	3321551	TATGGTGTAACGGTTAGCAC		59	3321491	3321509	TACCGAGATTTGAACTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14617	FBgn0031191	FBtr0100652,FBtr0100651,FBtr0077352	3	3	5	129	X	21887458	21887783	GATTGCTTCAACAGCTCTG		59	21887875	21887894	TGTTTGAGGAGTAGTTTGGT		58	NA	
Drosophila melanogaster	50	CG14619	FBgn0031187	FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350	3	5	5	124	X	21868684	21868703	TTATGAACTCGGTCATCCAG		59	21868790	21868868	GAGTTTGGCAAATTCGTGG		59	NA	
Drosophila melanogaster	50	Cyp6t1	FBgn0031182	FBtr0077212	3	1	1	60	X	21389411	21389431	CTTCACCATGTTCTTCTTTCC		59	21389371	21389389	TTCGGAGTAAAGATGGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210	2	5	8	86	X	21247686	21250626	ACATGACGCTTATGAAATGG		58	21250675	21250693	CAAAGTGGCCATAGAAGGT		59	NA	
Drosophila melanogaster	50	CG14579	FBgn0031163	FBtr0077256	3	1	1	60	X	21064635	21064653	AGCCTAGGCTTTCTTATCC		58	21064677	21064695	GTTGCAACAGATTGAAGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34120	FBgn0083956	FBtr0110827	2	1	2	80	X	21004909	21004927	ATCAAGCCGATTATCCAGG		59	21004969	21005056	GGCATTACTAAACTTCACCAC		59	NA	
Drosophila melanogaster	50	CG1529	FBgn0031144	FBtr0114624,FBtr0077267	3	2	2	114	X	20901407	20901425	AAGTCAGTGCAAGCTAGAG		59	20901311	20901329	GTAGTCATGGAAATGCCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pp4-19C	FBgn0023177	FBtr0077324,FBtr0077325	2	2	2	143	X	20293018	20293100	CAATTACTGCTATCGCTGC		59	20292893	20292911	TAGAGAAAGTAGTCCGCCT		59	NA	
Drosophila melanogaster	50	CG12655	FBgn0031080	FBtr0070036	2	1	1	60	X	19852737	19852755	CAATGGAGCCTACTACGTG		59	19852695	19852714	GTTGTTGTAGGAGAAGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdc42	FBgn0010341	FBtr0074751,FBtr0074752	2	2	2	64	X	19592047	19592066	GCTCATCTCGTATACAACCA		59	19592093	19592111	CATAGTTGTCGAACACCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tao-1	FBgn0031030	FBtr0074771,FBtr0074772	1	2	4	193	X	19470238	19470256	TGGACAACCTCAATTACCG		59	19469994	19470081	TGAGGAGCTCTGACTACTG		59	NA	
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074573,FBtr0074575,FBtr0074574	1	3	6	162	X	18301908	18302558	CCTACCAATGCGAGATGAG		59	18286878	18286897	GTGTAGTCCATATCGAAGCC		59	NA	
Drosophila melanogaster	50	crl	FBgn0015374	FBtr0074283	2	1	1	106	X	16488191	16488209	CAACTTCTTCGAGTGGGAG		59	16488362	16488380	GACTCAGAGGATAGTCGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	1	7	7	80	X	16273085	16273103	TTTGGTTATGCATGAGCAC		58	16273145	16273233	CAGAAGGCACATTTGTTATCC		59	NA	
Drosophila melanogaster	50	Graf	FBgn0030685	FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197	2	6	6	81	X	15646356	15646434	TAACCAATGTTCGTTACTCC		57	15646294	15646312	TAGTTCTCCGGAATGAGTC		58	NA	
Drosophila melanogaster	50	CG9053	FBgn0030606	FBtr0073969,FBtr0073968	3	2	2	62	X	14959721	14959739	CAACCACTGGTCTATGGTG		59	14959677	14959695	ATGAACACCTGGATGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eo	FBgn0030597	FBtr0073975	2	1	1	60	X	14812031	14812049	TGTACCACGGATGAAACAG		59	14811989	14812008	GACATGATGAGTGTAACCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5321	FBgn0030575	FBtr0073934	3	1	1	60	X	14574474	14574492	CGCATAGTAGTCGATTGGA		58	14574515	14574534	AAATGTTGTGGAACTCTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32599	FBgn0052599	FBtr0073904	3	1	1	264	X	14138036	14138054	AATCTCAACGAGATCCTCG		58	14139878	14139896	TGTTCTTTAGCGTCACCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ste:CG33236	FBgn0053236	FBtr0073873	1	1	1	60	X	13955227	13955246	GTATTTCAGCGAGATACTGG		57	13955186	13955204	CAAGCCAGAGGAACTATCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11178	FBgn0030499	FBtr0073805,FBtr0073804	2	2	2	237	X	13502355	13502441	AAACTAGCACAAACCATGC		58	13502642	13502660	TAACTGAGATCTCTTGGGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12723	FBgn0030459	FBtr0073738	3	1	1	153	X	13084523	13084542	AAATACCACAATTTCCCGGA		59	13084389	13084407	AATTGGCTAGTTGGTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1463	FBgn0030406	FBtr0073657	1	1	1	83	X	12504733	12504751	CACCAGGAGGATATGAAGC		59	12504614	12504632	TTCCTGGTTTGGTTACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	regucalcin	FBgn0030362	FBtr0073576,FBtr0073578,FBtr0073577,FBtr0073575	2	4	4	101	X	11910740	11910816	CAAGGTTAATCCCAACACTG		58	11910880	11910898	TACAGGATGTCCAAGTTGG		58	NA	
Drosophila melanogaster	50	tsg	FBgn0003865	FBtr0073582	2	1	1	67	X	11882397	11882415	CTATCGATGGTTCCACGAC		59	11882348	11882368	CGTTGATTCCATAATTGAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15221	FBgn0030331	FBtr0112979	1	1	1	181	X	11628579	11628597	AACATCTGGATGCTGATCG		59	11628742	11628832	ATACCAATCGCCATAGCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG1657	FBgn0030286	FBtr0073448	1	1	1	96	X	11227172	11227265	ATCATCAACTGCATCTCGA		58	11227325	11227343	CTACGTATATGAGCACGGG		59	NA	
Drosophila melanogaster	50	CG2898	FBgn0030195	FBtr0071445	1	1	1	60	X	10269622	10269640	CGTCAACAGTCTACCACTG		59	10269662	10269682	GATTCGTTATTACAGCACAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9686	FBgn0030158	FBtr0071389	2	1	1	117	X	9773985	9774003	GAATAGCTTGCAAGGATCG		58	9774084	9774102	CTTATCGCTCACATCTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gga	FBgn0030141	FBtr0071363	1	1	1	105	X	9496624	9496642	GAGCTATACAAGAGCTGCA		59	9496780	9496798	AATTGGCATCCAGAGTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9034	FBgn0040931	FBtr0071343	1	1	1	111	X	9053728	9053746	AACTACTATGCCAAGGACG		59	9053635	9053653	TCCTCTAGTCATCCTCGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	rdgA	FBgn0085373	FBtr0112551	1	1	3	92	X	8917821	8918117	GGATTCAGCCCTATACTGG		58	8918296	8918314	TTGTTCATGTAGTGCACGT		59	NA	
Drosophila melanogaster	50	CG15347	FBgn0030040	FBtr0071242	1	1	1	146	X	8354799	8354817	TTGGCCTACATCAGTTGTG		59	8353189	8353261	AATTGTGTAGCCATCCAGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG2278	FBgn0030017	FBtr0071185	3	1	1	91	X	8062922	8063011	AATGGTTACTTCGGTTCCA		58	8062849	8062868	TAGGAATAGTCCGGATACGA		58	NA	
Drosophila melanogaster	50	fs(1)h	FBgn0004656	FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119	1	5	5	116	X	7944306	7944477	CAAGAAAGATGAGTCCGCT		59	7944208	7944226	CTCGAACTGCTATCACTCG		59	NA	
Drosophila melanogaster	50	CG9650	FBgn0029939	FBtr0112959,FBtr0112957	1	2	6	121	X	7126488	7126507	TAAGTTCATCCAGCACAAGG		59	7126591	7126954	TTGTCGTTCTAAGGCTGAG		59	NA	
Drosophila melanogaster	50	CG3168	FBgn0029896	FBtr0070986,FBtr0070985,FBtr0070984	1	3	3	89	X	6617448	6617466	CTTCTCGCAGACATACTCG		59	6616690	6616708	AAGTACGACCAGATCACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3198	FBgn0029887	FBtr0070991	2	1	1	104	X	6566654	6566672	CACTCCTACGATAGCAGAC		58	6566202	6566302	TTTATGGTGATGGTGACGT		58	NA	
Drosophila melanogaster	50	CG15894	FBgn0029864	FBtr0112955,FBtr0070901	3	2	2	81	X	6219970	6219988	GTCAGATAGCCATACCCAG		58	6220094	6220113	GTGCCAGAACTATAGCTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Act5C	FBgn0000042	FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822	3	4	4	153	X	5797300	5797318	GATGAAGATCCTGACCGAG		59	5797435	5797453	GTAGGACTTCTCCAACGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16721	FBgn0029820	FBtr0070821	2	1	1	81	X	5775890	5775972	GTTCCATGGAAATGTTGGT		58	5776017	5776035	AATGGTCTCATCATCGCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	l(1)G0060	FBgn0027321	FBtr0070842,FBtr0070841	2	2	2	60	X	5637846	5637866	ACAATCATACTCTTCCTGGTG		59	5637806	5637824	CATTCACATACGCCTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sirt4	FBgn0029783	FBtr0070850	2	1	3	94	X	5559765	5559783	ACTTTCTCCTGTCCAAACC		59	5559506	5559647	GTAATCGGGAATCCAAGCT		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG6927	FBgn0029733	FBtr0070721	2	1	1	60	X	4801966	4801984	CTGCTGACATTCATTACCC		58	4802008	4802026	TGTAGCTAACCTTTGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4865	FBgn0026085	FBtr0070642	2	1	1	60	X	4008743	4008762	GGAGAATGGTATGGAGATGG		59	4008785	4008803	GAGAAGATCCTCCACAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6428	FBgn0029689	FBtr0070625	2	1	1	86	X	3861489	3861507	ATCTCGGAATATACACCGC		59	3861362	3861440	GTACGATTGCTGAATATCGC		59	NA	
Drosophila melanogaster	50	CG3603	FBgn0029648	FBtr0070558	2	1	1	61	X	2842482	2842500	CTGGAATAACCCGAGATGG		59	2842524	2842543	GTATACGTCATCGTAGTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10260	FBgn0040335	FBtr0070443	1	1	1	124	X	2526307	2526387	ATAATCCGAACTCCCAGGA		59	2526475	2526493	GAAGATGGTGATCACCTGG		59	NA	
Drosophila melanogaster	50	trol	FBgn0001402	FBtr0112811	2	1	7	128	X	2385514	2385533	TGGAGATTCCCAACATTAGG		59	2384861	2385355	ATCCAACGTCGTTATAGCG		59	NA	
Drosophila melanogaster	50	CG3091	FBgn0029608	FBtr0070416,FBtr0100226	2	2	2	61	X	2146958	2146976	CTTCCTAAGGGAGGAAGTC		58	2146860	2146878	AAAGGCTATCCATACCCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nmd3	FBgn0023542	FBtr0070425	3	1	1	63	X	2077149	2077167	TACCACGAGTTTCTTGACG		59	2077104	2077123	GATAGATGTTGACCTGACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3630	FBgn0023540	FBtr0070385	3	1	1	182	X	2065005	2065023	AACATCCACGTGATGAAGG		59	2065237	2065256	GTCTACCAACTTGTGTTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Unc-76	FBgn0040395	FBtr0070376,FBtr0070377	2	2	2	83	X	1985850	1985868	ACTTGACCACAGTCATTCC		59	1985913	1986003	CCTTGAGAATCTTGATCAGGA		59	NA	
Drosophila melanogaster	50	Actn	FBgn0000667	FBtr0070343,FBtr0070345	3	2	3	83	X	1924299	1924320	CTGGAGAATCTTAATACTGCCT		59	1923949	1924258	GTTGATCAAATCATCTGGATCC		59	NA	
Drosophila melanogaster	50	Actn	FBgn0000667	FBtr0070343,FBtr0070345	1	2	3	80	X	1924296	1924317	GAGAATCTTAATACTGCCTTCG		58	1923949	1924258	GTTGATCAAATCATCTGGATCC		59	NA	
Drosophila melanogaster	50	CG14809	FBgn0040898	FBtr0070276	1	1	1	60	X	1651144	1651162	GATGATGGGATCATCCAGC		59	1651102	1651120	AATGTCATTGTTGTCGCTC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	fz3	FBgn0027343	FBtr0112928,FBtr0070138	2	2	2	60	X	676831	676849	CGAGAGCTACAGAAATCGG		59	676872	676891	TTGATTCATCAGGGATGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18273	FBgn0029525	FBtr0070094	1	1	1	89	X	378404	378422	AGGACAATGGAAAGCAGAG		59	378270	378352	GATAGTTCAACGAGTGACCA		59	NA	
Drosophila melanogaster	50	CG17636	FBgn0025837	FBtr0112921	3	1	1	122	X	21786	21890	AAGTTACAATGTTCGATGGG		58	21683	21701	GGTTCCATTACATTCAGCA		57	NA	
Drosophila melanogaster	50	CG40955	FBgn0085544	FBtr0113957	3	1	1	86	U	9989963	9989981	CGAGTCATCGATCCATCAG		59	9989895	9989913	ATTCCTAGCCAAAGCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40820	FBgn0085523	FBtr0113936	2	1	1	61	U	7043597	7043615	GACTTTATCGCCTACTGCT		59	7043554	7043572	ACCCTAGTCTGAGTGTAGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40682	FBgn0085508	FBtr0113921	2	1	1	141	U	5709303	5709321	GAAGTTATCCGAGGAGCAG		59	5709426	5709444	TTGCTTATCTTGTTCGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41229	FBgn0085561	FBtr0114004	2	1	1	157	U	2151597	2151615	TTGGCGTTAAGTTATTGCG		59	2151736	2151754	ATACATACGTGGTCAACGT		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11077	FBgn0039930	FBtr0089222	3	1	1	60	4	1049497	1049516	CCTATCTATATTGGTCCGCA		58	1049456	1049475	TCTGAAGTTTAGCATCTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	myoglianin	FBgn0026199	FBtr0089093,FBtr0089092,FBtr0089095,FBtr0089094	2	4	4	86	4	714058	714079	CCTATTAATACCAACGATGAGG		58	713456	714011	ATGAGGTTGAATTTCCTCG		57	NA	
Drosophila melanogaster	50	CG31999	FBgn0051999	FBtr0089144	1	1	1	80	4	244621	244639	CTGATGAAGGTGAATTGCC		58	244501	244577	CACATATGTCATCATCGCC		58	NA	
Drosophila melanogaster	50	Crk	FBgn0024811	FBtr0089112,FBtr0089114,FBtr0089113	2	3	3	166	4	232269	232287	AAATCGTTTACCGCATTGG		59	232416	232494	TAAATCATCTTGATCGCTGC		58	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156	2	9	10	80	4	103363	106347	CCTAAGATGGGCTTAACTCG		59	106387	106408	CATATCTGAACTTAGCATTGGG		58	NA	
Drosophila melanogaster	50	CG31008	FBgn0051008	FBtr0085748	3	1	1	73	3R	26815408	26815427	ATTTAGTCGAAGAAGGTCCT		58	26815354	26815372	GAGATCGTCATTGTCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12071	FBgn0039808	FBtr0085717	3	1	2	133	3R	26704771	26704869	CCCTATATTTGTGAAGTGTGC		59	26704658	26704677	TTCTTCACCATGTTGTTCAG		58	NA	
Drosophila melanogaster	50	CG15545	FBgn0039806	FBtr0085719	1	1	1	60	3R	26697687	26697705	AAGAAGAGCCACTACAGAC		58	26697562	26697580	AATTGTAGCGTTGTTCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Jon99Ciii	FBgn0003357	FBtr0085502	1	1	1	60	3R	25748502	25748520	ATGTCCAGATCATTTCCCA		58	25748544	25748562	ATCATGTTGTCGTGGAGAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7802	FBgn0039704	FBtr0085486,FBtr0085485	1	2	2	80	3R	25648463	25648548	GAAATTGTGACAGGATACGTC		59	25648590	25648608	GCAATCAGTGAGCATTAGC		59	NA	
Drosophila melanogaster	50	CG1973	FBgn0039692	FBtr0085477	2	1	1	194	3R	25577542	25577561	CTTTAACTGGACGCAATCTG		59	25577782	25577870	CCTGAGAGGTATCCATTTCG		59	NA	
Drosophila melanogaster	50	CG7598	FBgn0039689	FBtr0085473	3	1	1	60	3R	25563621	25563642	AATAGACTATGTGGGTTTGGAG		59	25563663	25563681	CATTTCGTAGGCGAATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2010	FBgn0039667	FBtr0085428,FBtr0085427	1	2	2	119	3R	25323843	25323862	TAAGTTTATACAGCGCCAGG		59	25323944	25324030	ACAATGATCTTGCAGTTGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG11882	FBgn0039642	FBtr0085411	2	1	1	62	3R	24973014	24973034	CACATCGACATGAGATTTGAG		59	24972972	24972990	CTCGAAGTTGTCCAGTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0110913,FBtr0110912,FBtr0091524,FBtr0091527,FBtr0091526,FBtr0113466,FBtr0091525,FBtr0091523	2	8	9	80	3R	24745225	24745243	CGTCATTCAAGATGATGCT		57	24745285	24745962	GTGGCCATGATCTTATATCTG		58	NA	
Drosophila melanogaster	50	Hrb98DE	FBgn0001215	FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301	3	4	6	95	3R	24429337	24429355	CAATCAAGGCAACTATGGC		59	24429413	24429794	TTACTTTATCACCTCGTCCG		59	NA	InUTR
Drosophila melanogaster	50	Hrb98DE	FBgn0001215	FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301	1	4	6	94	3R	24429337	24429355	CAATCAAGGCAACTATGGC		59	24429413	24429793	TACTTTATCACCTCGTCCG		58	NA	InUTR
Drosophila melanogaster	50	CG5508	FBgn0027579	FBtr0085251,FBtr0085249,FBtr0085250	3	3	3	76	3R	23757321	23757339	ATATGCCTGTGACCTACTC		58	23757442	23757460	CAGCCTTAATCACCAAACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3368	FBgn0039508	FBtr0085163	3	1	1	74	3R	23111715	23111736	AGTACTTACTGATGAGCTTCTG		59	23111829	23111847	ATTGGTAACACCCAATGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18766	FBgn0042111	FBtr0085122,FBtr0085123	3	2	2	96	3R	23069043	23069061	CTTACCATCCACATCCGAG		59	23068903	23068985	GTACTCGGTCTTATAGAACCC		59	NA	
Drosophila melanogaster	50	CG17192	FBgn0039472	FBtr0085153	2	1	1	60	3R	22843605	22843623	CCGATAGCATGAATGTCGA		59	22843563	22843581	ATCACGTTAAAGTCTCCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6478	FBgn0039436	FBtr0085057	3	1	1	263	3R	22449011	22449031	TATCAGTGGTGGATCTATTGG		58	22448768	22448786	AATTCCTTCTGGAGCTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5959	FBgn0039387	FBtr0084940	2	1	1	60	3R	21723789	21723809	GAGTGCATATGCATAGAACTC		58	21723828	21723849	AAAGGATACTGGGTAATGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lnk	FBgn0028717	FBtr0084937,FBtr0084935,FBtr0084936	3	3	3	110	3R	21717658	21717678	AATGGCTACGATAATGGTCAG		59	21717750	21718182	CACTTCGTTGCAATGTCTC		59	NA	
Drosophila melanogaster	50	CG12250	FBgn0039345	FBtr0084895	2	1	2	91	3R	21419368	21419386	TTCCTACACTGCCAATTCG		59	21419241	21419314	TGAACCTCATGAACTTGAGG		59	NA	
Drosophila melanogaster	50	CG10559	FBgn0039323	FBtr0084854	3	1	1	97	3R	21140548	21140665	AAATATGGACGAGTTGTGCT		59	21140470	21140490	ATAGCCAACTTTAGACCATCG		59	NA	
Drosophila melanogaster	50	CG10550	FBgn0039321	FBtr0084857,FBtr0084858	3	2	3	155	3R	21133346	21133424	TATACTGCTGAAGGATGGC		58	21133209	21133227	TAAAGCTTTACGAACTGCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG13653	FBgn0039288	FBtr0084804	3	1	1	60	3R	21021800	21021819	TCATTCTATCTGAAGCACGG		59	21021842	21021860	CAAGATCGGGATAATCGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13634	FBgn0039224	FBtr0084742	3	1	1	60	3R	20615231	20615249	CCTACCAGTTGTACCACAG		59	20615189	20615207	TTGTAGAAGTCATCCTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syx18	FBgn0039212	FBtr0084670	1	1	1	60	3R	20450760	20450779	GGAACAGATCTATCTGGACC		58	20450719	20450738	CCTATAGGTTTCCAGTTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5669	FBgn0039169	FBtr0084565	2	1	1	60	3R	20050914	20050932	CAATCTTCAGGCTTTACCC		58	20050872	20050891	GTGAATGATTTGCACTTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10694	FBgn0039147	FBtr0084542	1	1	1	60	3R	19933621	19933639	CCTCAGGAGGTTGTTTCAG		59	19933663	19933681	GATCACTTGTCTGTACGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tbp-1	FBgn0028684	FBtr0084452	1	1	1	198	3R	19579348	19579366	GATACAGGAGCTCATCGAG		59	19579585	19579603	GAACATTTGCACCAACTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16710	FBgn0039101	FBtr0084438	3	1	1	89	3R	19509028	19509046	AAGCATAGGCACTACATGG		59	19509098	19509255	CAACTTATGGTTGCGTACTG		59	NA	
Drosophila melanogaster	50	beat-IV	FBgn0039089	FBtr0084433	3	1	1	175	3R	19400148	19401765	ATGGACATTGTGTTTCTGC		58	19404302	19404320	TATTTGTGCAGGTAGTGCT		58	NA	
Drosophila melanogaster	50	CG10175	FBgn0039084	FBtr0084423,FBtr0084421	3	2	3	104	3R	19350706	19351230	AAGATCTCTGCGGAAAGAG		59	19350620	19350638	CTATAGTAGCCTCCTCGCT		59	NA	
Drosophila melanogaster	50	ATPsyn-Cf6	FBgn0016119	FBtr0084432	2	1	1	130	3R	19181434	19181452	GTAACTTCGGAATCGTTGC		59	19181258	19181276	AATATCGGGATTGGAGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	cnc	FBgn0000338	FBtr0084397,FBtr0084394,FBtr0084392,FBtr0084395,FBtr0084396,FBtr0084393	2	6	7	68	3R	19013518	19013609	ATGTCTTCCAGTACCTACG		58	19013468	19013486	CCTGTTGCAAACTGTAGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	loco	FBgn0020278	FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273	2	4	4	86	3R	18446567	18446653	AGCACCAAGATGAACTACTC		59	18446500	18446518	AGTCGAAGTTGATTTCGGT		59	NA	
Drosophila melanogaster	50	CG7045	FBgn0038978	FBtr0084258	3	1	1	92	3R	18317925	18317944	TCAAATACTAACCAATGCCC		57	18317999	18318017	CCTGGTCTTTGATAAGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cchl	FBgn0038925	FBtr0084185	1	1	1	144	3R	17852267	17852285	GAGGTACTTAAGTGGGAGG		58	17852084	17852102	AGTCATGCCTATCGAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	mRpL35	FBgn0038923	FBtr0084171	1	1	1	60	3R	17849867	17849886	CTATAAGCCCTATCACAGCC		59	17849907	17849927	CACCTTAAAGGTCTTTGACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	1	22	22	84	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202454	17202549	TTCAGGAATACGATAGCGT		58	NA	
Drosophila melanogaster	50	CG5874	FBgn0038872	FBtr0084051	1	1	1	81	3R	17054078	17054159	CTCTATCGAACGAACACGT		59	17054204	17054222	ATAAGGGCTTTGTCAGGTC		59	NA	
Drosophila melanogaster	50	Stat92E	FBgn0016917	FBtr0089486,FBtr0089485,FBtr0089487	3	3	5	81	3R	16367270	16367415	GAAGACAGGATAATGTCCGA		58	16367208	16367228	GATCTTCGTTGAACTTTAGGG		58	NA	
Drosophila melanogaster	50	CG4538	FBgn0038745	FBtr0083855,FBtr0083856	3	2	2	92	3R	15725521	15725606	GCTCTATAATGGAACAACTGC		59	15725449	15725467	CTTTAACATAGTCGGCGGT		59	NA	
Drosophila melanogaster	50	nos	FBgn0002962	FBtr0083732	2	1	1	72	3R	14984678	14984696	TACAAGCGTTACAACAGCA		59	14984803	14984823	CTGGTTCGTTGTTATTCTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11779	FBgn0038683	FBtr0083750,FBtr0100549,FBtr0083749,FBtr0100548	2	4	4	78	3R	14981616	14981634	TCATGAGCGATAGTGATCG		59	14981489	14981508	TAGAACTTGGAGTCCTTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp12a5	FBgn0038680	FBtr0083730	2	1	1	85	3R	14959528	14959548	GAGAAACTACTGAAGGTTGAC		58	14959595	14959665	GTGCTCGAAGTAGTATCCA		58	NA	
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642	2	13	13	132	3R	14261181	14261201	ATGTCAGATACTCAGAGATGC		59	14260762	14260781	TTGTTATCTGTGAGACCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7215	FBgn0038571	FBtr0100283	3	1	1	144	3R	13992107	13992125	AATCATTTCACTGCGATCC		58	13991787	13991805	GATGATCACCTTCTTGCCA		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	sr	FBgn0003499	FBtr0083543,FBtr0083542	3	2	2	63	3R	13953324	13953342	ATATTCCCTCGTTCTTCGG		58	13953369	13956126	TCGATGGAACCAGTAATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34279	FBgn0085308	FBtr0112474,FBtr0112475	3	2	2	91	3R	13228451	13228647	TACCAGAAGGATTATCGCA		57	13228378	13228397	ATATTTCGCCACTAGATGTC		57	NA	InUTR
Drosophila melanogaster	50	Patr-1	FBgn0028470	FBtr0083392	3	1	1	91	3R	12872439	12872458	ACTTTCGAACTCCTAGTGAG		58	12872512	12872586	GAAAGGATTCCAAAGCGAC		59	NA	
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0083265,FBtr0083263	1	2	8	81	3R	12118544	12121396	TTAGGATCACATGCAGAGG		58	12121441	12121459	GCAACTCCATAACAAGAGC		58	NA	
Drosophila melanogaster	50	Acyp2	FBgn0038363	FBtr0083174	3	1	1	164	3R	11618599	11618617	TTCGAGATCTTTGGACGAG		59	11618867	11618944	CAGCCAATGTTTCATTTCCA		59	NA	Nonspecific
Drosophila melanogaster	50	c(3)G	FBgn0000246	FBtr0083196,FBtr0083195,FBtr0083194	3	3	3	110	3R	11617460	11617478	AACATTACGACAAGGAGCT		58	11617297	11617386	TATTATTCAGCTCTTGCGC		57	NA	
Drosophila melanogaster	50	Hsc70-4	FBgn0001219	FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056	1	6	6	61	3R	11071531	11071549	GGTATCCTCAACGTGACTG		59	11071571	11071592	GTAATGGTGATCTTGTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7530	FBgn0038256	FBtr0083020,FBtr0083021,FBtr0083019	1	3	3	103	3R	10551833	10551851	TTCAACCCGTACATTCGTC		59	10551639	10551767	CTCCAGATGTTGATCGTCTC		59	NA	
Drosophila melanogaster	50	Art6	FBgn0038189	FBtr0082878	2	1	1	60	3R	9771259	9771278	GTGCCAGTAAAGTTATAGCC		58	9771218	9771238	ATTATCTCCTCGGCTATATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rin	FBgn0015778	FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082796	2	4	5	60	3R	9476209	9476538	CAACAAGGGTGACTTTGAG		58	9476562	9476580	CTGATTATCACCGAACTGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG31157	FBgn0051157	FBtr0113394	3	1	1	183	3R	8873475	8873493	ATATCGTCGCGTTATGGTC		59	8873640	8873736	TCAAAGGTAACAGACCAGC		59	NA	
Drosophila melanogaster	50	CtBP	FBgn0020496	FBtr0082701,FBtr0082702,FBtr0082699,FBtr0082700,FBtr0100161	3	5	5	80	3R	8845523	8845622	AAATACACGAGAAGGTCCT		57	8845665	8845684	TCTCAAGATCCTCCTTTGTC		58	NA	
Drosophila melanogaster	50	CG7381	FBgn0038098	FBtr0082727,FBtr0082726,FBtr0082725	1	3	3	80	3R	8795258	8795366	CGATGAGAAGAAGTATGGC		57	8795196	8795215	TTCTTGGAACAAATCGAGTG		58	NA	
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	2	15	15	121	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811941	7812031	TTCTTCAGGATGTTGGAGG		58	NA	
Drosophila melanogaster	50	CG6790	FBgn0037915	FBtr0082460	1	1	1	60	3R	7402820	7402840	CACCTAAGATGGATTGTAGGA		58	7402780	7402799	GACAGTTGCAGTAAATCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6783	FBgn0037913	FBtr0100320	3	1	3	101	3R	7390430	7390520	ATCATTCATCTTTCGGCGT		59	7390347	7390366	TAGTCAGGGTGTAGGTATCG		59	NA	
Drosophila melanogaster	50	Irbp	FBgn0011774	FBtr0082385	2	1	1	61	3R	7237185	7237203	TTCAAGCATCGATCCTCTC		59	7237228	7237246	GGGTACATGAAATTCGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33630	FBgn0053630	FBtr0091607	1	1	1	60	3R	5888835	5888855	ACTACTCGCTTCTAAATTCCG		59	5888877	5888895	CCATTCTGGACTCCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34302	FBgn0085331	FBtr0112498	2	1	1	60	3R	5648962	5648982	GAAGTCAATGAGGACTATTGG		58	5648922	5648940	GAAACATCAGCATGTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16908	FBgn0037741	FBtr0082166	1	1	1	98	3R	5577208	5577284	AGCCTTAGTGATGTGATACC		58	5577129	5577147	TTTGTACTCCTGAGTCTGC		58	NA	
Drosophila melanogaster	50	unc-115	FBgn0037733	FBtr0082095,FBtr0082094	1	2	4	108	3R	5515793	5516164	TTAGCGAGATGTACATCCG		58	5515557	5515575	TACTCCCGGAGTATCAGAC		59	NA	Nonspecific
Drosophila melanogaster	50	CG9444	FBgn0037730	FBtr0082099	1	1	1	80	3R	5508101	5508120	CTACACAATGCAGTTGTAGC		59	5507980	5508061	GATAAACAGCTTGGATATCCTC		58	NA	
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0089782,FBtr0089781,FBtr0114459	1	3	8	81	3R	4660660	4661006	CATATACGGTACCCTACGAC		58	4660598	4660616	TAGATGCTGTACTTGCTGG		59	NA	
Drosophila melanogaster	50	Mcm2	FBgn0014861	FBtr0081827	2	1	1	60	3R	4092516	4092536	ATCAGGGAGTTTGTCTAATCG		59	4092557	4092576	ATAGAGGTACGATCCTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hph	FBgn0086689	FBtr0078782,FBtr0078781,FBtr0078780	1	3	3	110	3R	1092744	1092852	TGACCAATCAGATTGACTCTG		59	1092985	1093003	GATAACAAGCGACCATTGC		59	NA	
Drosophila melanogaster	50	CG14662	FBgn0037291	FBtr0078846	1	1	1	60	3R	809608	809628	CCGATAATAGTGAGGATTCCA		58	809568	809587	TAGCCAGATATAATGAGCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31522	FBgn0051522	FBtr0078941,FBtr0078939	1	2	4	125	3R	272159	272177	GGTTGTATTTAGCGCATGG		59	270274	271061	GCATGAACCATCCTTAACG		58	NA	
Drosophila melanogaster	50	eIF3-S10	FBgn0037249	FBtr0111110	3	1	2	114	3R	257831	258358	CATCCAGATATCTATTTCGGCA		59	257738	257757	TATTAACCAACTGAGAGCGG		59	NA	
Drosophila melanogaster	50	CG11739	FBgn0037239	FBtr0078915,FBtr0078913,FBtr0078916,FBtr0078914	2	4	4	80	3R	205702	205720	CAATCAGACATTCAACGCC		59	205764	205845	GAGGTAACTAGTTGCTGCT		58	NA	
Drosophila melanogaster	50	CG12581	FBgn0037213	FBtr0078961,FBtr0078962	2	2	2	106	3R	8593	8611	GACTCCGGTAATTCTGGTG		59	9470	9488	TCTTGACGTATGGAGTAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	snoRNA:Me28S-A576	FBgn0086080	FBtr0114356	1	1	1	62	3L	17559236	17559254	GATGAGGCCAAGTATTCGT		59	17559192	17559210	ATGCATACTTTCGAATCCC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-1837c	FBgn0082994	FBtr0113607	1	1	1	73	3L	5757107	5757125	CAGAGATCAACAGTGTCGA		59	5757052	5757070	GGACAACTTTAAAGACCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	msopa	FBgn0004414	FBtr0078482	2	1	1	215	3L	22075935	22075953	GAACTTCATACAGATCGCC		57	22076132	22076150	TTCTTTCTACCGGAACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11248	FBgn0037117	FBtr0078430,FBtr0078431	2	2	2	146	3L	21675714	21675788	CTACAAGAAGCTCGTTCAG		57	21675898	21675916	TTCATATCAGACTGGCAGG		58	NA	
Drosophila melanogaster	50	CG33283	FBgn0053283	FBtr0078285	2	1	1	83	3L	20972307	20972326	GCACGTGGCATATTATACCT		59	20972372	20972475	CTTGGACCACTTCTCTTCC		59	NA	
Drosophila melanogaster	50	Pitslre	FBgn0016696	FBtr0078250,FBtr0078247	1	2	4	80	3L	20769084	20769102	CGAATTCTTGCAGATGCTG		59	20769143	20769284	GTTCCCAATTCCTTAAAGATCC		59	NA	
Drosophila melanogaster	50	polo	FBgn0003124	FBtr0100318,FBtr0074839	1	2	2	141	3L	20305703	20305789	TCTGTGCAGCTAAACTTCTC		59	20305893	20305911	ACAAGTCTTTAGACACGCC		59	NA	
Drosophila melanogaster	50	CG14183	FBgn0036931	FBtr0074907	3	1	1	81	3L	20019235	20019253	AGGAATGGGTTACTGAGGA		59	20019124	20019192	TACTCAACCCTCATGTATTCG		59	NA	
Drosophila melanogaster	50	CG9472	FBgn0036874	FBtr0074982	3	1	1	60	3L	19479204	19479222	GAAGTATCGCCTGATTACC		57	19479162	19479180	GAAGTAAACCAGGAACAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32206	FBgn0052206	FBtr0089795,FBtr0089796	2	2	2	83	3L	19374588	19378509	GACATTGTGCAGATTATCTTCG		59	19374526	19374544	TTCGTAACCATCCACATCC		59	NA	
Drosophila melanogaster	50	CG14073	FBgn0036814	FBtr0075084,FBtr0075085	2	2	2	80	3L	18796820	18796939	GGAGATATTTGATGCTAAGGAG		58	18796761	18796779	AGAGCTCTGCTCATATCAC		58	NA	
Drosophila melanogaster	50	grim	FBgn0015946	FBtr0075130	2	1	1	76	3L	18296841	18296859	TATCCTTCGAGATCAGCAG		58	18296783	18296801	TTAGTTCTCCTTGGAGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp74F	FBgn0036769	FBtr0075154,FBtr0075155	2	2	2	93	3L	17886316	17886411	TTTGTGATATTCGTGGGTG		57	17886241	17886259	GATTTGTACCGAGCAACTC		58	NA	
Drosophila melanogaster	50	Eip74EF	FBgn0000567	FBtr0075202,FBtr0075203,FBtr0100411,FBtr0075204	1	4	4	216	3L	17557950	17558464	CACAACAGGTTCATTTCCG		59	17557752	17557773	GTTCTGGTATAAATTCGGATGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Oatp74D	FBgn0036732	FBtr0075173	2	1	1	80	3L	17494563	17500728	CACGCCTAACAGAAATACAC		58	17500769	17500789	TAGATTGGTTGATCTGGTCTG		59	NA	InUTR
Drosophila melanogaster	50	CG7630	FBgn0040793	FBtr0075217	3	1	1	221	3L	17418703	17418721	TAAGCACATTGTCAAGCAG		58	17419174	17419252	CCAGAAGATTTCACGAATCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	rogdi	FBgn0036697	FBtr0075283,FBtr0075282	1	2	2	85	3L	17045161	17045179	AGTTCATACTCACCGTGTC		59	17045228	17045832	AAAGCTAATGTCAGCCTGG		59	NA	
Drosophila melanogaster	50	Baldspot	FBgn0036650	FBtr0075355,FBtr0075356	2	2	2	86	3L	16652387	16652406	ACATGGGTGTTCTACTACTG		58	16644626	16652338	CAATTGGAATCTAGGCCGA		59	NA	
Drosophila melanogaster	50	CG13033	FBgn0036638	FBtr0075400	2	1	1	61	3L	16538211	16538229	CCTGAACCATGTCCTTCAG		59	16538168	16538186	GCAAGTACTCGTTGTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13065	FBgn0036590	FBtr0075468	2	1	1	97	3L	16270982	16271000	CTACAAGTCGGCATATCCT		58	16271061	16271079	TTTACCATCCATGAGCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13053	FBgn0040801	FBtr0075480	2	1	1	120	3L	16252433	16252518	TTATCTCTGGTTAGCAGTGC		59	16252332	16252350	GTAGTAGGATTCTGGCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0112852,FBtr0112851,FBtr0075438,FBtr0075439	2	4	6	100	3L	16057085	16057333	GTCCCACTAATAATCAAGTTCC		58	16057394	16057412	ATCGTTCTCAAAGCTTTGC		59	NA	
Drosophila melanogaster	50	CG7255	FBgn0036493	FBtr0110881,FBtr0100360	3	2	3	145	3L	15301806	15301827	GCTCGTCGTAGATTATTTAGAG		58	15301932	15302036	AGAAATACGGGTATACCCAC		58	NA	
Drosophila melanogaster	50	CG16959	FBgn0036481	FBtr0075655,FBtr0075656	3	2	2	238	3L	15114504	15115738	GGATCAGGTCAAGAGAACC		59	15114284	15114302	CATAGCAAGACTCCTCTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6650	FBgn0036402	FBtr0075769	2	1	1	81	3L	14025984	14026061	CACATGTCTAGAAAGCTGC		58	14026106	14026124	GATGGATGTCATCGTTTGG		58	NA	
Drosophila melanogaster	50	CG8833	FBgn0036386	FBtr0075792	3	1	1	93	3L	13920553	13920571	AAACTGAACTAGCCAAGGA		58	13920420	13920496	GAATTCATAGCAGAAGGCA		57	NA	
Drosophila melanogaster	50	CG14119	FBgn0036322	FBtr0075869	3	1	1	62	3L	12885121	12885139	TTATGGATCGAATGGAGCT		58	12885163	12885183	GTAGTGTACGTATTGTAGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rols	FBgn0041096	FBtr0076055,FBtr0076057,FBtr0076053	3	3	5	169	3L	12006171	12006189	TTAACCACAAGAATCTGCG		58	12005820	12006038	ATGAGTATGATCTCCCGAC		57	NA	
Drosophila melanogaster	50	Sug	FBgn0036191	FBtr0076109,FBtr0076110	2	2	2	121	3L	11681142	11681160	CTCCTATGCAAGCATTGTG		58	11681306	11681324	ACTCAAATAGCTGTCCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14145	FBgn0036118	FBtr0076202	3	1	1	60	3L	11055017	11055036	GAATCTGAATACTTCGACCA		57	11055059	11055077	CATCATCGGAGCTAATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32081	FBgn0052081	FBtr0076198	1	1	1	80	3L	11020803	11020880	TCACCCGATATCTGATATTGG		58	11020919	11020940	GATAATGGAATGGCCATAACTC		58	NA	
Drosophila melanogaster	50	simj	FBgn0010762	FBtr0076262,FBtr0076263	2	2	3	121	3L	10681691	10681791	TTTAGAGCTTTGGGACAAGG		59	10681875	10682038	TTATTGTTGAAGGCTGCCA		59	NA	
Drosophila melanogaster	50	CG14160	FBgn0036066	FBtr0076316,FBtr0113160	2	2	2	115	3L	10081982	10082003	CAACCATAATACCCACAATCTG		59	10081408	10081906	CACTGGAGGTATATGCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10809	FBgn0036052	FBtr0076366	1	1	1	298	3L	9851661	9851679	TCATCTTACGCTACATGGT		58	9851107	9851125	CTTGTCACAATGCCAACTC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385	3	8	8	114	3L	9825956	9826035	GAGTTAACCGGGACTACAC		59	9826112	9826131	AGTCTTTCCCAAACTTAGCC		59	NA	InUTR
Drosophila melanogaster	50	CG14168	FBgn0036044	FBtr0076374	1	1	1	145	3L	9786741	9786759	TCTACTTGCCCGATTTACC		59	9786487	9786632	CTTTGGGAAGATCCCAAGG		59	NA	
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326	1	11	11	88	3L	9773789	9773875	CCTCATGAGATCTTTGTGC		58	9773927	9773945	TCATACTTGATCCAACGGG		59	NA	
Drosophila melanogaster	50	smg	FBgn0016070	FBtr0076549,FBtr0076550,FBtr0076551	1	3	3	132	3L	8986300	8986318	CAGTCAACTCAAGGACCTG		59	8986129	8986205	CTTACCATTCCATCTTGGCT		59	NA	
Drosophila melanogaster	50	CG5288	FBgn0035950	FBtr0076553,FBtr0076555,FBtr0076554	2	3	3	81	3L	8977959	8977978	GCTTCAACTCAGAAATCTCG		58	8977752	8977915	CTTTGGAAGCTCGATTCTG		58	NA	
Drosophila melanogaster	50	Tsp66E	FBgn0035936	FBtr0076507,FBtr0076508,FBtr0076506	3	3	3	85	3L	8919887	8921127	GCATTGAGCAATTTACACAG		58	8921175	8921193	GCTCATGAAGAACATGACG		58	NA	
Drosophila melanogaster	50	CG8044	FBgn0035829	FBtr0076765,FBtr0076764	1	2	2	138	3L	7968997	7969015	ATCAAGTCGTCGACTTCTC		59	7968877	7968895	AATTCATGATGGAACTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RNaseX25	FBgn0010406	FBtr0076752	3	1	1	60	3L	7964291	7964309	GGAGTTCTGGACCATTCAC		59	7964333	7964351	GAAATTCGGTCCCATTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14837	FBgn0035797	FBtr0076825	1	1	2	166	3L	7551793	7552322	ATAATAACAAGCCACACGC		58	7551645	7551663	GTGAAGACCCTCCATTACC		59	NA	
Drosophila melanogaster	50	bhr	FBgn0082598	FBtr0076849,FBtr0076848	2	2	2	72	3L	7365559	7365578	GATGCCTTTGTCAAGTTCAC		59	7365613	7365692	TTTACGACAGGTAGCTAGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	form3	FBgn0053556	FBtr0091533,FBtr0113469	3	2	2	253	3L	7112367	7112446	GTGCCCAATTACAAATTGC		58	7112663	7112681	TTATTCGCCCGGATATCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10077	FBgn0035720	FBtr0076940	1	1	2	172	3L	6944502	6944523	GATCAACTACGATTATCCTTCG		58	6944287	6944369	GTTTGGGATTGATGGTCTG		58	NA	
Drosophila melanogaster	50	sfl	FBgn0020251	FBtr0076968	3	1	1	83	3L	6539444	6540359	TTCTATCAGGTCATAACGGC		59	6540405	6540423	ATACTTGCCGGGATTTAGG		59	NA	
Drosophila melanogaster	50	CG32415	FBgn0052415	FBtr0077111	3	1	1	60	3L	5798203	5798221	ACAGGCCATGTATGTATCC		58	5798245	5798263	CGTCAACCGATTATAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1135	FBgn0035489	FBtr0073202	1	1	1	290	3L	4041686	4041763	TTAAGAGCTCGGAACAACC		59	4042017	4042035	TATTACGTTTGTTGCGACG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11505	FBgn0035424	FBtr0073046,FBtr0073047,FBtr0073045	3	3	3	96	3L	3231784	3231917	GCCAAAGAGAAAGATAATCGTC		59	3231974	3231992	TAGTGTTGTGCTCTGTAGC		59	NA	
Drosophila melanogaster	50	CG32276	FBgn0047135	FBtr0073107	1	1	2	60	3L	3198771	3198789	AATATGTGACAATGCGTGG		58	3198409	3198427	GGATATTGACCCTCTTTCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	rasp	FBgn0024194	FBtr0073029	1	1	1	60	3L	3163181	3163199	GACGCATCCACTTCTACTC		59	3163223	3163241	AGGAATTCGTACAGACCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	prominin-like	FBgn0026189	FBtr0073120,FBtr0073119,FBtr0073118	2	3	3	89	3L	3118970	3119051	CCTGCTTCTAGCCATACTG		59	3118899	3118917	TAGGTTACCATACCCAGCA		59	NA	
Drosophila melanogaster	50	CG16753	FBgn0035393	FBtr0072990	3	1	1	107	3L	3055297	3055315	AAGAAGGAGAAATCCGAGG		58	3055386	3055404	GACAACTTTGGTCTTCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33231	FBgn0053231	FBtr0072896	2	1	1	64	3L	2465278	2465296	TAGAGCAGCTAGTGATGAG		57	2465323	2465342	AAACATTCCTCAGGATCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13801	FBgn0035332	FBtr0072888	3	1	1	60	3L	2362078	2362096	ATATCAATTCTGTCCGCCT		58	2362118	2362138	CCTTGATGATATCCTTCTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myo61F	FBgn0010246	FBtr0072675,FBtr0072673,FBtr0072672,FBtr0072674	1	4	4	83	3L	1326066	1326084	TCCTCGAGAACTACCAGAG		59	1326127	1326210	CAATGTAGGTATAGATCAGGTCC		59	NA	
Drosophila melanogaster	50	bab1	FBgn0004870	FBtr0072642	1	1	2	126	3L	1040332	1040350	AAATGATGGAGAACTCGCA		59	1040151	1040169	TGATGCATCAGATTCTGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13895	FBgn0035158	FBtr0072605	2	1	1	179	3L	707611	707898	TACTCTGACAATGATGACACC		59	707452	707470	CCGATTGGAGACTATGCTC		59	NA	
Drosophila melanogaster	50	MED14	FBgn0035145	FBtr0072555,FBtr0072554	1	2	2	85	3L	594775	594793	CTACATACGATCGGTGTCC		59	594842	594930	TTCCTTGGAGGTTGAAGTC		59	NA	
Drosophila melanogaster	50	rno	FBgn0035106	FBtr0072531,FBtr0072532	2	2	2	137	3L	197455	197473	ATGAGAATGTCATCTGCGA		58	197278	197354	ATAGCCATTGTCCTGATGG		59	NA	
Drosophila melanogaster	50	CG34038	FBgn0054038	FBtr0100093	2	1	1	96	2R	21056206	21056224	AGTTGAAACTGTTAGGCGA		59	21056283	21056539	TGGTTGTAATGACATTCCGT		59	NA	
Drosophila melanogaster	50	CG16936	FBgn0027590	FBtr0072436	2	1	1	278	2R	20654930	20655005	GAACTACGGCCAATTAACC		58	20654670	20654688	ATAATACAGGATGGGCTCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	itp	FBgn0035023	FBtr0072306	3	1	2	84	2R	20443083	20443815	CCGATTATGCAAGAAAGACTG		59	20443861	20443879	GGATATTTCCTCTTCGGGT		58	NA	
Drosophila melanogaster	50	CG3419	FBgn0035002	FBtr0072292	2	1	2	89	2R	20301906	20301924	GCAGCCAAGACTTAAATCC		58	20302060	20302078	TTGTTGGGAATTAAGTGCC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Rap2l	FBgn0025806	FBtr0072177	3	1	2	125	2R	19952545	19952563	TCGAGTGAAAGGAAGTCAG		58	19952723	19952742	ATAAATGGACAGTCCCACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4019	FBgn0034885	FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103	1	4	4	213	2R	19495764	19495782	TCGAGTTCGTAATCACCTC		58	19495489	19495507	TAGATCCAGTTGCTCTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	apt	FBgn0015903	FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067	2	5	5	107	2R	19484512	19484593	TAAAGACGGAAATGACACAG		57	19484660	19484681	GATCGAGTAGGTATTTCTTCTC		57	NA	
Drosophila melanogaster	50	apt	FBgn0015903	FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067	1	4	5	115	2R	19468991	19484433	GGTCAACAAACAGTATTCGG		59	19484508	19484591	GTGTCATTTCCGTCTTTATGTC		59	NA	
Drosophila melanogaster	50	CG9812	FBgn0034860	FBtr0072025	2	1	2	142	2R	19300650	19302031	ATCAACCAAGATGCAAGGA		59	19300307	19300544	CCAATGGGAATATCGAGGG		59	NA	InUTR
Drosophila melanogaster	50	CG9895	FBgn0034810	FBtr0071986	3	1	1	112	2R	18901384	18901402	TAAATGGATCACGACTGCA		58	18901290	18901308	GACTCCAAGAGTCGAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30264	FBgn0050264	FBtr0071889	3	1	1	80	2R	18716120	18716194	CACAGATAACTTGGAACGC		58	18716235	18716256	TGAATTAGTATCCGACTCACAC		59	NA	
Drosophila melanogaster	50	RpS24	FBgn0034751	FBtr0071935	2	1	1	248	2R	18528524	18528542	CCAGGAAACAGATGGTCTG		59	18528294	18528312	GCTTCTTCTGTTCGAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gp150	FBgn0013272	FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815	3	4	4	83	2R	18213223	18213296	GAAGTCCAAGAGCAAATCC		58	18213341	18213361	TCGTCGTAGTCATATTGAGAG		58	NA	
Drosophila melanogaster	50	CG17922	FBgn0034656	FBtr0071675	2	1	1	98	2R	17581991	17582010	AAACATCGGGTTATGTACCT		58	17581856	17581930	CAGATCCAGCTTAAACTGC		58	NA	
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708	1	9	9	89	2R	17398741	17398920	CCAGAGGATTACGTCTATCC		58	17398972	17398990	ACCAATCACCGACTTTAGG		59	NA	
Drosophila melanogaster	50	Sara	FBgn0026369	FBtr0071641,FBtr0071642	2	2	2	116	2R	17373768	17373847	TTATTAAGTGCGAGGACTGG		59	17373926	17373944	AAAGATCGAGAAGTGGCAG		59	NA	
Drosophila melanogaster	50	dom	FBgn0020306	FBtr0071602,FBtr0071603	3	2	3	90	2R	17222088	17224944	GAGTAATCAGGTCTGGATATCG		59	17225053	17225074	GATATCGTTATCGTTGTCTTGC		59	NA	
Drosophila melanogaster	50	Hil	FBgn0050147	FBtr0086256,FBtr0086255	1	2	2	95	2R	16502071	16502089	CTTCAAATGCGTACACTGC		59	16500960	16502013	TGTGAACTGCAATAGACCTC		59	NA	
Drosophila melanogaster	50	Fak56D	FBgn0020440	FBtr0086542,FBtr0086543,FBtr0114605,FBtr0086544	3	4	5	84	2R	15322745	15322828	TGGTATTAATACCGCTGAGAG		59	15322681	15322700	CCAAATCGTGAACTCTAGGT		59	NA	
Drosophila melanogaster	50	ena	FBgn0000578	FBtr0086583,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582	3	5	6	115	2R	15048910	15048988	CCATTCTCAAGGTCAATGG		58	15049064	15049085	GTTCTTGACTTTCTGAATCTCC		58	NA	
Drosophila melanogaster	50	CG10927	FBgn0034360	FBtr0086705	3	1	1	60	2R	14501328	14501347	ACCGAAGATTTCAAGAAGGA		58	14501367	14501388	GGTAATCGTAGTAGGCTTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12263	FBgn0034346	FBtr0086691	3	1	1	132	2R	14314961	14314981	GAAAGTAAGGATTGGCAAGTG		59	14315075	14315150	CCACCACGGATCTTATCAC		59	NA	
Drosophila melanogaster	50	CG5770	FBgn0034291	FBtr0086812	2	1	1	110	2R	13932207	13932225	AGAAGACCTATCAGTCCGA		58	13932052	13932133	CATTATCAGCAGCATTCGC		59	NA	
Drosophila melanogaster	50	PpY-55A	FBgn0003140	FBtr0086817	3	1	1	60	2R	13843909	13843927	GAGTGCACATTAAAGGAGG		58	13843867	13843885	TGATCACTTCACGAGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4847	FBgn0034229	FBtr0086937,FBtr0086934,FBtr0086933	1	3	5	191	2R	13400212	13400290	GACTTCTTGAGCCAATCTG		58	13400443	13400463	GGTCAATTGACTAAGGAACTC		58	NA	
Drosophila melanogaster	50	CG6984	FBgn0034191	FBtr0086979	3	1	1	60	2R	12980162	12980180	AGAAGCCTACATATCGGGA		59	12980202	12980222	CTCCTTATCTAGTTCCTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9646	FBgn0034184	FBtr0086974	3	1	1	92	2R	12937673	12937748	AATTTGAGACTGAGGTGGA		58	12937804	12937822	TGAGATAAACCGTCTCCTC		58	NA	
Drosophila melanogaster	50	CG8963	FBgn0034181	FBtr0087016,FBtr0087017	3	2	2	119	2R	12905299	12905580	TTGCCTTAACCAGAATCCG		59	12905198	12905216	TTCTCGAAGATGTCCTCCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15609	FBgn0034180	FBtr0114627,FBtr0114625	2	2	6	104	2R	12896440	12897016	CAATCATTGTGAGACCGAG		58	12896354	12896373	ATATTTAGCTGCATCTGTCG		57	NA	
Drosophila melanogaster	50	Psi	FBgn0014870	FBtr0087073,FBtr0087072	3	2	3	178	2R	12752526	12752604	AGAATAAGCAGAACGGATCTG		59	12752368	12752386	ATACTGCGAATACTGTGCA		59	NA	
Drosophila melanogaster	50	CG8435	FBgn0034084	FBtr0087249	1	1	1	165	2R	12057716	12057734	GGACTACAACACTCTGCTG		59	12057509	12057530	CTTGATCTCCTCAATGATTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Mlf	FBgn0034051	FBtr0087294,FBtr0087292,FBtr0087295,FBtr0087293	1	4	4	133	2R	11826642	11826660	CTTTGACCAGGGATTCCAG		59	11826469	11826545	AATTGCCACCAATATCAGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG8297	FBgn0034050	FBtr0087290	2	1	1	60	2R	11822560	11822578	AATTTGACGGTGTATTCCC		57	11822601	11822620	AGGTTTCGAAGCTATAATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30466	FBgn0050466	FBtr0087339	1	1	1	111	2R	11460161	11460182	GGATTTAAGGAGTTCACATTCG		59	11460253	11460327	GGATGGGATCCTCATTAGAC		59	NA	
Drosophila melanogaster	50	CG12963	FBgn0034031	FBtr0113083	1	1	4	127	2R	11443335	11443353	GCTTCTGGTCATCATTCTC		57	11443509	11449328	CATTACGATCATTTCGTGTG		57	NA	Nonspecific
Drosophila melanogaster	50	Hex-C	FBgn0001187	FBtr0087399	1	1	1	60	2R	11106836	11106855	CTTTAAACAGAGCAGTCGAC		58	11106795	11106813	AACCTCTTCGTTTCTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10249	FBgn0027596	FBtr0087429,FBtr0112929,FBtr0087431,FBtr0087430	1	4	4	88	2R	10790219	10790298	GACAGTAATGGCAACACAG		58	10790149	10790167	TCGCAAACCTTAGAATCCA		58	NA	
Drosophila melanogaster	50	Cyp6a20	FBgn0033980	FBtr0087454	2	1	1	60	2R	10769905	10769923	TAAGACCGTACTGATTCGC		59	10769946	10769965	TTCGTTATGAAATACTCCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-phe	FBgn0020766	FBtr0087594	3	1	1	63	2R	9856202	9856223	GTCTATGATCAAATGAATCCGG		58	9856247	9856265	CGGGAATTAGCAGATTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tum	FBgn0086356	FBtr0087641	3	1	1	140	2R	9744167	9744186	TGATGAAGGCACTTCTTGAG		59	9743991	9744065	TGAAGGGAGTTGCATATAGC		59	NA	
Drosophila melanogaster	50	CG34315	FBgn0085344	FBtr0112513	1	1	1	80	2R	9093547	9093568	CTCTTCAGCTTCCTTATATGGA		59	9093416	9093506	CAAAGTAAGATCCAGCGGA		59	NA	Nonspecific
Drosophila melanogaster	50	Nmda1	FBgn0013305	FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876	3	6	6	93	2R	8765642	8765662	GACGAACTTCATATTCTTGGG		58	8765511	8765587	CATGAGAACCTCTTTCGGA		58	NA	
Drosophila melanogaster	50	CG30488	FBgn0050488	FBtr0087818	3	1	1	123	2R	8734737	8734944	AGTAAGAGAAGGAACCTGTG		58	8734633	8734654	GCAGAGCAGGATAATATTTGAC		59	NA	
Drosophila melanogaster	50	CG30044	FBgn0050044	FBtr0113358	3	1	2	190	2R	8383681	8383699	CAATGTGAATCTGCTGCTC		59	8385931	8387475	CAGAAGTCTCGTAGCACTG		59	NA	Nonspecific
Drosophila melanogaster	50	RpIII128	FBgn0004463	FBtr0087977	3	1	1	60	2R	7928586	7928607	GAGTATTTAGATGTGAACGAGG		58	7928627	7928646	CTATTTGATCCTCGTTCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ef1alpha48D	FBgn0000556	FBtr0088036,FBtr0088035	2	2	2	63	2R	7781103	7781121	TAACATTGTCGTGATCGGA		58	7781148	7781166	GTAGATCAAGTGTCCGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13185	FBgn0033661	FBtr0113071	3	1	2	86	2R	7758832	7758925	ATAAGCTACTATGCCTCGC		59	7758764	7758782	CCTTACTACCGATCTCCAC		58	NA	
Drosophila melanogaster	50	Cpr47Ee	FBgn0033602	FBtr0088114	2	1	1	60	2R	7154176	7154194	CCTAATCACCCAACAACTG		58	7154215	7154236	ATTATAGCCATATGGATCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr47Ea	FBgn0033597	FBtr0088190	2	1	1	99	2R	7139895	7139913	TGGCTATTTGAAGAACCCG		59	7139728	7139746	GTAGGTGATGGTGTAGACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	1	12	12	88	2R	6499952	6500255	GCATATGGACATGTATAACTCG		58	6500304	6500322	TATAGTGCGGTTCCTTCTG		58	NA	
Drosophila melanogaster	50	CG1599	FBgn0033452	FBtr0089394	1	1	1	105	2R	5728846	5728922	GAGCAATAATTCCGTTGCA		58	5728759	5728777	GAAGGTTATCACCAGACCC		59	NA	
Drosophila melanogaster	50	CG1623	FBgn0033448	FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487	1	4	4	69	2R	5716115	5716133	GAACTACGAACCCAAGACC		59	5716064	5716082	ATCCGGATACTTGTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33800	FBgn0053800	FBtr0091804	2	1	1	60	2R	5636492	5636511	TAATTTCCGTGTAATCGGAC		57	5636533	5636552	ATCGACGTGAAAGTTAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(var)2-10	FBgn0003612	FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578	1	9	9	80	2R	5005945	5006020	TCATAGATGGCTACTTCCAG		58	5006060	5006081	CATCCTGATGAAGTTGAATCTC		58	NA	
Drosophila melanogaster	50	CG30350	FBgn0050350	FBtr0088636	2	1	1	60	2R	4714781	4714801	CTCGAAGTTTATGGTCAAACG		59	4714823	4714841	CAGCATCAAATCGGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2915	FBgn0033241	FBtr0088879,FBtr0088878	3	2	2	61	2R	3845933	3845951	TATTCCGATTGCCTACACC		59	3845890	3845908	GAATGAACAAGTCCTGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Prosalpha6	FBgn0026781	FBtr0088896,FBtr0088895	2	2	2	250	2R	3715847	3715927	CTCTACCAAGTGGAGTACG		58	3715327	3715345	TACTTGTAGCGGAAGTTGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG1882	FBgn0033226	FBtr0088835,FBtr0088837,FBtr0088834,FBtr0088836	1	4	4	62	2R	3701151	3701169	ATTTGTGAAATCGGTGGAG		58	3701195	3701213	CCCAACAGAATCATGTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12824	FBgn0033222	FBtr0088830,FBtr0113050	3	2	2	105	2R	3678248	3678269	CTACTTAATGGGTTACTCATCC		57	3678388	3678406	ATAGAATGCCATTCCGAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Gr43a	FBgn0041243	FBtr0089014,FBtr0110820	2	2	2	153	2R	3279520	3279538	ATGTGCACTGGTACATTCC		59	3279330	3279403	CTGGTTGCATTGTTCTCTG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111050	2	1	60	178	2R	3249250	3249268	GGAGAAACCCGATTAAGTG		57	3236472	3242602	TTGTACCATCTAAACGATGG		57	NA	
Drosophila melanogaster	50	CG1850	FBgn0033154	FBtr0089022	1	1	1	60	2R	3147967	3147985	CTCAACCCATTGAGGAGAC		59	3147925	3147943	AACTGCTTCAGATGTTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha16	FBgn0004145	FBtr0086150,FBtr0086153,FBtr0086151	1	3	4	80	2R	2519556	2519574	TTCTTCGGAGTTATGGGAG		58	2515389	2515407	GGTACCAGACTTAGCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pld	FBgn0033075	FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997	1	6	6	80	2R	2141751	2142360	GACATTCAGGGTTACTTGGT		59	2142403	2142421	CTCCTTACTAGTTCCAGGC		58	NA	
Drosophila melanogaster	50	l(2)k14710	FBgn0021847	FBtr0086000	1	1	1	81	2R	2100656	2100731	ACACGGAAATGATTAGCTG		57	2100593	2100611	CTTCCACTAACGAGATCGT		58	NA	
Drosophila melanogaster	50	mle	FBgn0002774	FBtr0086031,FBtr0100576,FBtr0086030	1	3	3	82	2R	1864960	1865499	CCTGCATGTTATTCTTATGTCG		59	1864899	1864918	GTACTTCCAATACGGGACAG		59	NA	
Drosophila melanogaster	50	ap	FBgn0000099	FBtr0086059,FBtr0086058	2	2	2	100	2R	1595875	1596126	CGCTAACATAGATCTCAACAC		58	1595795	1595813	GATGCTTAAACGAGGTTCG		58	NA	
Drosophila melanogaster	50	CG6448	FBgn0032976	FBtr0085939,FBtr0113045,FBtr0085938	2	3	5	213	2L	22156803	22158518	GTCCAAATTCAAGGTGCTG		59	22158694	22158713	TTGCCGATACGATTTATTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	nompB	FBgn0016919	FBtr0085924,FBtr0085925	2	2	2	82	2L	21578666	21578756	GGCAAAGTTTACTATCAGACAG		59	21578605	21578623	TCTGAGTATGGACTACGCT		59	NA	
Drosophila melanogaster	50	Gr39b	FBgn0041245	FBtr0081522	2	1	1	68	2L	21368048	21368066	ATGCTGAGGGCTTTATGAG		59	21367940	21367958	AATAGGTAACTTTCGCAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9264	FBgn0032911	FBtr0081463	1	1	2	80	2L	21080465	21080483	ATCCTATTCAGTGGCTGTG		59	21080526	21080608	AGGTATCAGCAGAATGAGTC		58	NA	
Drosophila melanogaster	50	CG9270	FBgn0032908	FBtr0081436,FBtr0081435	3	2	2	92	2L	20930076	20930152	CTTAGAAGAGGTGCACCTC		59	20930002	20930021	CCTACACTGTAGTTGGATCC		59	NA	
Drosophila melanogaster	50	CG2608	FBgn0032870	FBtr0081384	1	1	1	63	2L	20646473	20646491	GAGATAGCCAAGGAGTACG		58	20646518	20646536	CTTTGTCACTTTGCTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	phr6-4	FBgn0016054	FBtr0081404	2	1	2	147	2L	20645748	20645766	AACAGCTGTTTACACTCGA		59	20645347	20645420	GATTTCAAACGGTACCTGC		59	NA	InUTR
Drosophila melanogaster	50	CG40174	FBgn0058174	FBtr0100564	3	1	1	60	2L	20257971	20257989	CCATCGTTTGTCTTGTTCG		59	20257929	20257947	GTAGAGTGGGTTGGATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	swm	FBgn0002044	FBtr0081244,FBtr0081245	1	2	2	183	2L	19496695	19496714	TGCGAATAACAAGTCTACCC		59	19496860	19496969	GCCGAAGTTCTTAAAGTGC		59	NA	
Drosophila melanogaster	50	CG17567	FBgn0040994	FBtr0081231,FBtr0081232,FBtr0081230,FBtr0081229	1	4	4	157	2L	19183415	19183433	TTAGGATACCCTGAACGCT		59	19183223	19183241	AATGAGCACTGGATGTAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7094	FBgn0032650	FBtr0080990	3	1	1	60	2L	17555074	17555096	GAGATACAAGGACATAGAGTCAG		59	17555036	17555054	AGTTAGATTCCGATCCGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dl	FBgn0000462	FBtr0081005,FBtr0081006,FBtr0081007	1	3	3	80	2L	17442329	17442416	GATCCGTTTAAGACTGGCT		59	17442267	17442285	TACTTGAAAGCACAATCGC		58	NA	
Drosophila melanogaster	50	beat-IIIc	FBgn0032629	FBtr0080971,FBtr0080972	2	2	2	90	2L	17191092	17193535	GATTGTTGCGTATCTTCCG		58	17191020	17191040	GCAATTAACCCGAACATAGTC		59	NA	
Drosophila melanogaster	50	beat-IIIb	FBgn0053179	FBtr0080951	3	1	1	160	2L	16992118	16992667	GCTCGAAGACAAACAACTG		59	16992791	16992809	CTAATATGCGTGACCAGGG		59	NA	Nonspecific
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080905,FBtr0080897,FBtr0080907	3	3	13	82	2L	16777372	16777392	CTTGAAGGTATCCGTATTTGC		59	16777436	16778404	TTCAGGATTTGATAGCGCA		59	NA	
Drosophila melanogaster	50	trpgamma	FBgn0032593	FBtr0080946,FBtr0080945,FBtr0114470	2	3	3	80	2L	16666840	16666932	CGTATCAACTTATTTCGGAACG		59	16666781	16666801	CCTCCTCAAAGTAGCTTATCC		59	NA	
Drosophila melanogaster	50	wor	FBgn0001983	FBtr0080740	1	1	1	60	2L	15424610	15424628	AGAGGATCAGGAGAATCAG		57	15424568	15424586	GTACAGATCATTGCTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15277	FBgn0032555	FBtr0080680	2	1	1	253	2L	14908819	14908837	TACTGAACGCTTATGCCAG		59	14908584	14908602	GTTATCGTCCAGATCCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32972	FBgn0028905	FBtr0080600	3	1	2	88	2L	14164081	14164100	CGTTTCTACCAGGTTAAGGA		59	14163420	14164033	GTGCTATCGTTCTTAATCTTGC		59	NA	
Drosophila melanogaster	50	Acyp	FBgn0025115	FBtr0080555	1	1	1	80	2L	13912481	13912499	TTCATATCAAGCCCGATCC		59	13912543	13912561	AATTGCTATCATGGTGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9014	FBgn0028847	FBtr0080579	3	1	1	165	2L	13723000	13723076	GAATGAAGGTACCCAAGGA		58	13722853	13722871	TAGTACTGGAACAGCTCCA		59	NA	
Drosophila melanogaster	50	CG9263	FBgn0032530	FBtr0080515	3	1	1	61	2L	13542197	13542216	AATTGGTACGGATGGATGTC		59	13541967	13541985	ATCTCAACATCGTCTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6108	FBgn0032498	FBtr0080459	2	1	1	60	2L	13277633	13277651	CAGTTACAGTCAGAGTTCC		57	13277672	13277693	GATTATATCCGGTAGAACACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090013,FBtr0090027	2	3	17	91	2L	12731058	12737970	ATCTTTATGGTTCTGGCTACC		59	12738023	12738041	AAGTAGTACAGGAAGGCGA		59	NA	
Drosophila melanogaster	50	CG16997	FBgn0032413	FBtr0080335	2	1	1	60	2L	12111331	12111349	ATTAATTCCAACTGGCTGG		57	12111370	12111391	CAAGTACTTGATTCCTATTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-thr	FBgn0027081	FBtr0080333,FBtr0080332,FBtr0080331	3	3	3	73	2L	12105094	12105112	CTACGACATGCATCTGGAG		59	12105203	12105221	TTTGCTTAACCAGACCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	crol	FBgn0020309	FBtr0080262	1	1	4	138	2L	11797737	11798678	CTTCATCTGCAAAGTTCCC		58	11797617	11797635	GATGAGCGTAGAGGTAACC		59	NA	
Drosophila melanogaster	50	CG31705	FBgn0028490	FBtr0080244,FBtr0080243,FBtr0080242	2	3	3	77	2L	11524601	11524620	AGCTGTTTACTATCCACAGG		59	11524475	11524493	AATGCTCCAGCGATAAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14920	FBgn0032337	FBtr0114455	1	1	1	60	2L	11084169	11084187	ATCATCAAGCTAGGGAGGA		59	11084066	11084084	TAATCCAACAATGTTCCCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG18561	FBgn0032301	FBtr0080190	1	1	1	64	2L	10792422	10792440	GACATGGCTCCATAAACAC		58	10792376	10792394	CTTAAGCAGCCTCTTTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31869	FBgn0051869	FBtr0080189	3	1	1	199	2L	10775281	10775378	CGATTATAAATGCGATTGCG		58	10774739	10774757	TTGGACAATTGTCGTACTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG17118	FBgn0032291	FBtr0080111	2	1	1	99	2L	10730584	10730605	GTGCTCCTTATAAAGAACATGC		59	10730731	10730749	TCTGGAAATTGGACACTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18302	FBgn0032266	FBtr0080095	2	1	1	83	2L	10535693	10535777	GACCATTAGTGTTTATTGCCAG		59	10535820	10535839	TCTTATGTATCAGGCTTCGC		59	NA	
Drosophila melanogaster	50	CG33301	FBgn0053301	FBtr0079935	2	1	1	60	2L	10049949	10049967	AAACTAACTGCAGATGCCA		59	10049991	10050009	AATCCTCCAGAATCATGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nAcRalpha-30D	FBgn0032151	FBtr0079912	2	1	6	113	2L	9802435	9806460	TGCTGTTCCTCTTATAGGAG		58	9798296	9802359	AAGTAGGTGCCTAACAAGG		58	NA	
Drosophila melanogaster	50	CG3838	FBgn0032130	FBtr0079835,FBtr0079834	2	2	2	69	2L	9571883	9571962	CAAGAGAAAGCGTGATCCA		59	9571995	9572013	TTTATGTAGCGGGATAGGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	FucTB	FBgn0032117	FBtr0079811	2	1	1	81	2L	9430069	9430088	ACTGATGAAACATCTTCCGA		59	9429574	9430025	GTAATCCTTCTGCAAGCTC		58	NA	
Drosophila melanogaster	50	RpS13	FBgn0010265	FBtr0100541,FBtr0079724	1	2	2	183	2L	8364231	8364249	AGATGATGTCAAGGAGCAG		59	8364004	8364022	CATGTGGTACAGATCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pvr	FBgn0032006	FBtr0079625,FBtr0079627	1	2	6	109	2L	8228249	8228503	TAATGGAGAAAGCACGTGG		59	8228158	8228176	TGACTCGAAAGGTAAAGCC		59	NA	
Drosophila melanogaster	50	CG8552	FBgn0031990	FBtr0079641	3	1	1	82	2L	8136758	8136777	GTGGACACAAAGTTCATCTG		59	8136622	8136715	GTGGAATCGTCAAGATTTAGG		58	NA	
Drosophila melanogaster	50	CG14538	FBgn0031943	FBtr0079484	3	1	1	61	2L	7756733	7756751	TCCCATCATTGTCATCCAG		59	7756776	7756794	CAACGTTATCACTGCTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31904	FBgn0051904	FBtr0079502,FBtr0079501	2	2	2	107	2L	7735484	7735566	ATTTAAAGGCATTGGCTACG		58	7735396	7735414	GGGTGTATTGAATTCACGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG33296	FBgn0053296	FBtr0079509	1	1	1	102	2L	7714974	7714992	TCTTGTCTAGTGCAAGTGC		59	7714821	7714908	AGTTGAGTTGCAGTCAGAG		59	NA	
Drosophila melanogaster	50	GRHR	FBgn0025595	FBtr0079308,FBtr0079310,FBtr0079309	3	3	3	99	2L	6713835	6714562	GTGTACAGCATACTGTTTGTG		59	6713756	6713775	TGATATCAATACGCAAGGGA		58	NA	
Drosophila melanogaster	50	Spn27A	FBgn0028990	FBtr0079321	2	1	1	60	2L	6672928	6672947	TCATGGCATCTACTGAAGAC		59	6672887	6672906	AGATGATCACATTCTTGTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11030	FBgn0031736	FBtr0079135	3	1	1	221	2L	5759153	5759171	AGAAGATGACAGCGATGAG		59	5759356	5759440	AGCATGGAAGACGTAATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14017	FBgn0031721	FBtr0079105,FBtr0079104	1	2	2	60	2L	5554043	5554061	AGACATCGCCTACAATCAC		59	5554085	5554103	TAGATACCGTCTGTCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vri	FBgn0016076	FBtr0079070,FBtr0079071	3	2	2	123	2L	5307901	5308027	AGGCTTCTAACTTGCATCC		59	5308113	5308132	ATCATTCCATCTCCATAGCC		59	NA	
Drosophila melanogaster	50	CG14035	FBgn0031685	FBtr0079020	1	1	1	60	2L	5103477	5103496	TGATTTACGATGACGAAGAG		57	5103516	5103537	GATTGATTCGCTATAATCTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31919	FBgn0031674	FBtr0079007,FBtr0079006,FBtr0100270,FBtr0079008	1	4	4	116	2L	5047102	5047120	AGATGGATCCACATAGTGC		58	5047198	5047284	CGTTATAGATAGCTGCATTCC		58	NA	Nonspecific
Drosophila melanogaster	50	ine	FBgn0011603	FBtr0077448,FBtr0077446,FBtr0077449	3	3	4	142	2L	4473965	4474339	AGTCTCAGGTTATCTTCCAG		58	4473842	4473860	GGAAATGATAGGAACTGCC		57	NA	
Drosophila melanogaster	50	Gs1l	FBgn0019982	FBtr0110812	1	1	2	148	2L	4456500	4456518	AGGAAACGAACTTGTTGAC		58	4456060	4456388	TATATCCTCTCCGTGTCCA		58	NA	InUTR
Drosophila melanogaster	50	slp2	FBgn0004567	FBtr0077500	2	1	1	60	2L	3838116	3838137	CAATTTCTTACCTATCCTCCGA		59	3838157	3838176	TATAACGCTGATACATGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31952	FBgn0051952	FBtr0077591	2	1	1	66	2L	3417320	3417338	AGCAGCTAAGGACAAAGTC		59	3417368	3417386	TGTGACTTTCGACTTTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3542	FBgn0031492	FBtr0077648,FBtr0077649	3	2	2	80	2L	3024052	3024070	CACGTTAGCGGCTATAGAG		59	3024169	3024188	TTATCCTTAAACACCACAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3542	FBgn0031492	FBtr0077648,FBtr0077649	1	2	2	77	2L	3024055	3024073	GTTAGCGGCTATAGAGGTG		59	3024169	3024188	TTATCCTTAAACACCACAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Ts	FBgn0024920	FBtr0077679	2	1	1	60	2L	2968689	2968707	CATTAAACGTCAGGTGCAG		59	2968647	2968667	GTCGACTATCTGAAAGTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4272	FBgn0028485	FBtr0077763,FBtr0077762	1	2	2	60	2L	2368168	2368189	CTCGTACGGAGAACTATATCAG		59	2368207	2368330	CGTATAGGAAGTGATCTGAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31668	FBgn0051668	FBtr0113412	1	1	1	80	2L	2205761	2205782	AATGACTATATGATGGGATCGC		59	2205631	2205720	CACCGCAGATATACAGCTC		59	NA	
Drosophila melanogaster	50	CG10874	FBgn0031395	FBtr0077848	3	1	2	121	2L	2191944	2191962	GGTGACCTATGTGAATGAG		57	2191070	2191859	CATCACGATCTTTCAGGAG		57	NA	
Drosophila melanogaster	50	CG31665	FBgn0051665	FBtr0089787,FBtr0089786	3	2	2	123	2L	1851262	1851698	ACCTGCTAATTGTGGTGTC		59	1851785	1851803	GAGTTGGAGTAGCACACTC		59	NA	Nonspecific
Drosophila melanogaster	50	Gr22b	FBgn0045500	FBtr0100188	2	1	1	69	2L	1793231	1793250	GAAATTCGTCCTTATTTGGC		57	1793181	1793199	ATATACCGAGTAGCCAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	chinmo	FBgn0086758	FBtr0077879,FBtr0077877,FBtr0077880,FBtr0077878	3	4	4	104	2L	1690665	1690684	AAATGGAACAGTTTCTCGTC		58	1690751	1694237	TTTGAATACTACGCCATCG		57	NA	
Drosophila melanogaster	50	CG31924	FBgn0051924	FBtr0077945,FBtr0077946	1	2	2	60	2L	1354545	1354563	TCAAAGCGTTCAACATTCC		58	1354503	1354521	ATCCTAAACGAATCCCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11835	FBgn0031264	FBtr0078076	1	1	1	60	2L	562207	562225	AACCAAAGAGTCCAAGGTG		59	562165	562184	AGTGTTCTGATCCAATTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ush	FBgn0003963	FBtr0078063	3	1	1	82	2L	539382	539400	CAAGATGTGACTTCCAACC		58	539446	539529	TTAATGTGGAAACTGGGTG		57	NA	
Drosophila melanogaster	50	spen	FBgn0016977	FBtr0078122	3	1	3	82	2L	199974	200131	CATAACACCGAATGATTCTACG		59	200173	200192	CACCTCGCATTAAATGATGC		59	NA	
Drosophila melanogaster	50	CG14618	FBgn0031189	FBtr0077351	2	1	1	128	X	21876258	21876276	GACCACAATCACTTCAAGG		58	21876368	21876477	AAACACATGGTAGGTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7406	FBgn0030980	FBtr0074664	1	1	1	60	X	18972152	18972171	TCTCACGGACATGATTATGG		59	18972191	18972212	CCTTGATGATCTTAACATCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18259	FBgn0030956	FBtr0074661	3	1	1	129	X	18676847	18676865	TGGGTAACCACATGTTGTC		59	18676679	18676756	GATATTTCCTCATCCTCGAGG		59	NA	Nonspecific
Drosophila melanogaster	50	CCKLR-17D1	FBgn0030950	FBtr0113001	1	1	3	81	X	18603481	18607397	CTACTATGATTACGGCCAC		57	18603418	18603436	GTATAGATGCCTCCTTCCT		57	NA	
Drosophila melanogaster	50	CG6788	FBgn0030880	FBtr0074495	1	1	1	68	X	17782499	17782517	AGATCAAGGACCAAAGTGC		59	17782549	17782567	GACACTCACTTCGAAGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7835	FBgn0030879	FBtr0074543	2	1	1	70	X	17768493	17768511	CAATGTGCTGATGGTTCAG		59	17768441	17768460	TATAATAGAGTGCCCGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13003	FBgn0030798	FBtr0074349	1	1	1	89	X	16740997	16741015	TTATTTCGCCAACAGGAGG		59	16740611	16740629	CACTGTAGTTCACCATGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	para	FBgn0003036	FBtr0111022,FBtr0074298,FBtr0111023	3	3	3	81	X	16386529	16386547	TGTGATGGTCCTGAATGAC		59	16383897	16386484	ATAGTAAACGGAGACACCG		58	NA	
Drosophila melanogaster	50	CG9919	FBgn0030742	FBtr0074236	2	1	1	81	X	16223400	16223562	CAGTCGTTTGTCAAGTCCT		59	16223337	16223355	GGTAGGAGTCCATCAATGG		59	NA	
Drosophila melanogaster	50	CG11584	FBgn0030541	FBtr0073893	3	1	1	62	X	14076245	14076263	GTGGTTCAGAGCTACAGTG		59	14076288	14076307	TGGATAGGAATAGGTCTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tim9a	FBgn0030480	FBtr0073775	1	1	1	122	X	13279589	13279607	CATACGCGACTTTACAACG		59	13279758	13279776	ATAACCTGGAACTCCTGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32643	FBgn0052643	FBtr0073716	3	1	1	82	X	12878837	12878855	AGCACATACGTTACTACGG		59	12878899	12878919	AGTATTCTGTTGGTCAAGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab40	FBgn0030391	FBtr0073668,FBtr0073669	1	2	2	84	X	12355529	12355547	ACATCACCAACAAGTGGAG		59	12355219	12355237	AGAACCTTCGGAATTCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CkIIbeta	FBgn0000259	FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559	3	5	6	164	X	11689031	11689146	TTTGTTCCAAGGCTATATGG		57	11689687	11689705	TTGTATTCGTGCGTATGTG		58	NA	InUTR
Drosophila melanogaster	50	CG11126	FBgn0030265	FBtr0073433	2	1	1	81	X	11001472	11001490	GAGTTGGAGTAACGTGACC		59	11001535	11001615	CTTGTAGGTGATGTTGCCA		59	NA	
Drosophila melanogaster	50	CG17841	FBgn0028480	FBtr0071444	1	1	1	80	X	10276473	10276492	TCATCAGCATCGCTATACTG		59	10276534	10276624	GTAGAAAGACCTTGAGAGCA		59	NA	
Drosophila melanogaster	50	CG32694	FBgn0052694	FBtr0071413	2	1	4	165	X	9893323	9895894	ACATCACCAAGCAAATCGA		59	9896022	9896041	CTCTTAGAGCTCTCATCGTC		59	NA	
Drosophila melanogaster	50	CG1530	FBgn0029983	FBtr0071097	3	1	1	85	X	7834381	7834400	TCTGGACATTTAAGTTCGAG		57	7834448	7834536	GAGGTGTTCCTTGTAATCC		57	NA	
Drosophila melanogaster	50	Mcm6	FBgn0025815	FBtr0070952	3	1	1	60	X	6569517	6569538	CACAAGATCTATGAGATGTCCA		59	6569556	6569577	AGAGGCTGCTAATTAGATTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HLH4C	FBgn0011277	FBtr0070691	2	1	1	60	X	4540287	4540305	AAATAATCCGCATCTGGTC		57	4540245	4540263	CTTATCGATATCCAGCGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11444	FBgn0029715	FBtr0070698	2	1	1	120	X	4447990	4448008	GAGGAAAGTTCGTCAACCA		59	4447888	4447907	TTATCGTCGCTATCTGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11436	FBgn0029713	FBtr0070699	3	1	1	60	X	4444850	4444869	AACCTCCAAGATGTATAGCT		57	4444809	4444827	CTTCTTGAACTCCTTCACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL33	FBgn0040907	FBtr0070655	3	1	1	100	X	4216035	4216053	TACTGGAAAGTGTGGTCAG		58	4215890	4215971	TTCCTGTTGAATGTACGGA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14797	FBgn0029587	FBtr0070271	3	1	1	231	X	1577935	1577953	GTCCGTGATGAGTATGGAG		59	1578201	1578219	GATCTGGAATAGGGTCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13369	FBgn0025640	FBtr0070115	1	1	1	80	X	518363	518443	CATTGGCAACATAGAGCAC		59	518487	518505	CCCAGAGTTATGATCACCG		59	NA	
Drosophila melanogaster	50	svr	FBgn0004648	FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070086,FBtr0070082,FBtr0070085	3	7	7	108	X	396240	396324	TATGACAACTCCTTGGCTC		58	396394	396414	TCATAATCGGATGGTTGTCAG		59	NA	
Drosophila melanogaster	50	CG18166	FBgn0029526	FBtr0070095	2	1	2	62	X	375292	375313	GCTGTTAGAAGAGAACAATTCG		59	375188	375269	ATCGCGATAGTTCAACGAG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG41229	FBgn0085561	FBtr0114004	3	1	1	158	U	2151597	2151615	TTGGCGTTAAGTTATTGCG		59	2151737	2151755	CATACATACGTGGTCAACG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG40275	FBgn0058275	FBtr0113857	1	1	2	75	U	1839127	1839145	GAATATAGCTGGTGTTGCC		58	1845814	1845832	ATTAGGAGCTTTAACGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41053	FBgn0069960	FBtr0113978	1	1	1	298	U	642877	642898	CTCCAGAATTTATACCGTTACC		58	641891	641909	TTTCTTCTGCTTCCTCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CaMKII	FBgn0004624	FBtr0089217,FBtr0089218,FBtr0100148,FBtr0089219,FBtr0100146,FBtr0100147	2	6	6	80	4	1068498	1068517	CAGGATATCTGTCTCCTGAG		58	1068344	1068456	AAAGAATAACTCCACATGCC		58	NA	
Drosophila melanogaster	50	RhoGAP100F	FBgn0039883	FBtr0085869	1	1	1	91	3R	27661191	27661274	CTGAGAAATACGGAAAGCA		57	27661329	27661347	GAAATTGGTCGGGTAAGAC		58	NA	
Drosophila melanogaster	50	CG18673	FBgn0040629	FBtr0113330	2	1	1	125	3R	27089287	27089359	CGTACAATGGATCTCTGACC		59	27089447	27089465	TTTGTCGTGAGTCTCTGAG		58	NA	
Drosophila melanogaster	50	CG33483	FBgn0053483	FBtr0089295	3	1	1	93	3R	26726722	26726740	ACACTCGAAGTACAATCCG		59	26726587	26726666	TAGATCATGATCGAATGGGC		59	NA	
Drosophila melanogaster	50	spn-A	FBgn0003479	FBtr0085589	2	1	2	70	3R	25881634	25881652	CTAACGAATGTTCAGGCAC		58	25881519	25881602	CCTATTAACTTAGTCACGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS8	FBgn0039713	FBtr0085489	1	1	1	155	3R	25688837	25688855	ATGAAGAAGTACCTGGAGC		58	25689192	25689210	GAATTCCAACTCCTTGCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hrb98DE	FBgn0001215	FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301	3	4	6	95	3R	24429337	24429355	CAATCAAGGCAACTATGGC		59	24429413	24429794	TTACTTTATCACCTCGTCCG		59	NA	InUTR
Drosophila melanogaster	50	CG12883	FBgn0039538	FBtr0085216	2	1	1	62	3R	23505142	23505230	GTTCGAGCAAGAACAAGAC		59	23505256	23505274	CAGTCATGTTACTGCATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6452	FBgn0039438	FBtr0085054	2	1	1	76	3R	22451951	22451970	CTTCGTCAAGTACAGGACTC		59	22451894	22451912	CTCCCAGGTTATCGTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14238	FBgn0039429	FBtr0085014	3	1	1	82	3R	22285333	22285416	ATCACAAGGAGGAACATACAG		59	22285459	22285478	CAGGATCACATTGAGTACGA		59	NA	
Drosophila melanogaster	50	Hex-t2	FBgn0042710	FBtr0085011	1	1	1	60	3R	22277008	22277114	AATGTGGTGAGTCTTCTCC		58	22277136	22277156	CGGTATTGATCTTTAGATCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34110	FBgn0083946	FBtr0110797	1	1	1	80	3R	20995952	20995971	AACCCAAACTTAAGTTCAGC		58	20995831	20995911	CTTCTTCAAACTGTCTCATCC		58	NA	
Drosophila melanogaster	50	CG13641	FBgn0039239	FBtr0084729	1	1	1	60	3R	20690089	20690107	TCGCCTGGATACTACTCTC		59	20690047	20690066	GATTCTTGTGCGGATAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5805	FBgn0039223	FBtr0084743	3	1	1	101	3R	20611625	20611702	CTATCAGGACGAACTGTTCC		59	20611543	20611564	GTTAGTATTGTCGTTGTGAAGC		59	NA	
Drosophila melanogaster	50	sec10	FBgn0027103	FBtr0084547	2	1	1	80	3R	19962226	19962244	AAGACGAACATCATTGTCC		57	19962286	19962364	GTACTTGGGTGTATTACTCAC		57	NA	
Drosophila melanogaster	50	cnc	FBgn0000338	FBtr0084392,FBtr0084393	2	2	7	90	3R	19023680	19023698	GTGAATACATACGCTTGCC		58	19023544	19023627	GGATCGTTGGATAAATCGTC		58	NA	
Drosophila melanogaster	50	unk	FBgn0004395	FBtr0084403,FBtr0084402	3	2	2	144	3R	18981726	18981807	ATACAAGTACAGGTCCACTC		58	18981601	18981619	GGTCGACTTGTAGATCTCC		58	NA	
Drosophila melanogaster	50	Or94a	FBgn0039033	FBtr0084341	2	1	1	60	3R	18813738	18813816	ATTAGAAGCCTAACCCTGAC		58	18813836	18813857	TGATCTGAGATAGGATATAGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31159	FBgn0051159	FBtr0084270	3	1	1	82	3R	18440605	18440680	TACGACTGCTTTGGAACAG		59	18440723	18440744	CTAACTAGGGTTAATGGACCAC		59	NA	
Drosophila melanogaster	50	CG7044	FBgn0038854	FBtr0084035	3	1	1	109	3R	16925092	16925112	ACTCGGAAGTCTATGTAAGAG		58	16924936	16925022	AAGATGGTCTACAAGATCGA		57	NA	
Drosophila melanogaster	50	CG10830	FBgn0038839	FBtr0083986	1	1	1	285	3R	16722461	16722479	TTAAGTTCCGGAAGCTGTC		59	16722194	16722212	TCATTGTAGTGGTTCCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17271	FBgn0038829	FBtr0083993,FBtr0110823	3	2	2	105	3R	16647077	16647158	CAGCAATACCAATACGAACAG		59	16646992	16647010	GGATTGGTTGATGTTGCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG7342	FBgn0038716	FBtr0083777	1	1	1	105	3R	15430349	15430367	TATGGAGCACCAATGTCAC		59	15430436	15430615	CGCATGTACTCCATAACCA		59	NA	
Drosophila melanogaster	50	CG31244	FBgn0051244	FBtr0083772	2	1	1	60	3R	15224066	15224087	CCGAAATTAGAGAACGATAAGC		59	15224027	15224046	TCTCTGGATTATCCAGAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14286	FBgn0038673	FBtr0083710	2	1	1	77	3R	14850208	14850226	ATCAAATTCACACCTACGG		57	14850267	14850285	CTTTCCAGATGACAGAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14301	FBgn0038632	FBtr0083692	1	1	1	222	3R	14456618	14456730	AATTGCCATGAAACAGTTCG		59	14455785	14455803	GTATGGGATAGTCAACGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5292	FBgn0038491	FBtr0083410	3	1	1	62	3R	12978064	12978082	CCATAGGATCGAGATCACG		59	12978108	12978126	AAATCCTTTAGCAGAGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083351,FBtr0083347	2	2	6	81	3R	12550978	12550996	GGCATATCAACAGACATGG		58	12484784	12536290	GACCATTTGTACCTAGCCA		58	NA	
Drosophila melanogaster	50	CG14883	FBgn0038432	FBtr0083291	2	1	1	80	3R	12282429	12282523	AGCCATTAAGAAGTGCCTC		59	12282567	12282585	ACGACTATTTCACCACAGG		59	NA	
Drosophila melanogaster	50	Akt1	FBgn0010379	FBtr0083226,FBtr0083228,FBtr0083227	2	3	3	108	3R	11928589	11928607	GACAAGGAGTTTACGGGAG		59	11928679	11928768	CTCCTTGGTAGCTGAACTG		59	NA	
Drosophila melanogaster	50	Trax	FBgn0038327	FBtr0083093,FBtr0083092	1	2	2	60	3R	11187826	11187844	ATCGCGGTTAACTTTAGGG		59	11187868	11187886	GGAACTGGTAGACATCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gyc88E	FBgn0038295	FBtr0083028,FBtr0083027,FBtr0110961	2	3	3	95	3R	11013392	11013410	GGATGAGCTGCTGTATCAG		59	11013469	11013557	ACGCTATCGAACATCTCAC		59	NA	
Drosophila melanogaster	50	CG34383	FBgn0085412	FBtr0112622,FBtr0112621,FBtr0112624,FBtr0112623	2	4	4	133	3R	9583497	9584191	AACTCTAAGAAACTGGAGCAG		59	9584286	9584304	TTGATGTGAGAGCCATCAC		59	NA	
Drosophila melanogaster	50	CG14372	FBgn0038156	FBtr0100458	2	1	1	131	3R	9283377	9283463	TGGACGTGAATCTGAAACC		59	9283558	9283576	CTTTCCACCAGGTGATGAG		59	NA	
Drosophila melanogaster	50	CG14383	FBgn0038102	FBtr0082724	2	1	1	60	3R	8814072	8814090	TCAACATCTTCCAGCAGTC		59	8814030	8814051	AGCAGTAGCATATAGTTTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kar	FBgn0001296	FBtr0082666	1	1	1	141	3R	8509987	8510005	TATTTCAAGCGGTACCTGG		59	8509805	8509882	AAACGAGGCTCATTATCCG		59	NA	
Drosophila melanogaster	50	Hsp70Ba	FBgn0013277	FBtr0082679	1	1	1	84	3R	8293417	8293435	CAATCTGCAGTAAAGTGCA		58	8293351	8293369	GCAGATTTCTGTAGTTGCA		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	mthl5	FBgn0037960	FBtr0082515	3	1	1	86	3R	7710597	7710674	CCTACTCTCAGAGATCTGGT		59	7710530	7710548	AATTCTGACAAGGTCTGCT		58	NA	
Drosophila melanogaster	50	CG6962	FBgn0037958	FBtr0082516	2	1	1	118	3R	7706265	7706283	AGAAGATCTTTGGCGAGTG		59	7706106	7706184	CGCTTGATCAACATTAAACG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Ho	FBgn0037933	FBtr0082424	1	1	1	115	3R	7506300	7506375	TTTCCTGAGAAGATCTCTGTC		58	7506452	7506470	AATACGTTGCGACTTTCCT		59	NA	
Drosophila melanogaster	50	CG6719	FBgn0037893	FBtr0082406	2	1	1	246	3R	7235145	7235163	AAATGGTCAATGTGCTTCG		59	7234856	7234936	GTTGTGATTTGATCCCTCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Gr85a	FBgn0045473	FBtr0082216	2	1	1	64	3R	5821411	5821481	GAAGTATCGAATGGCTGTC		57	5821365	5821383	TACGCCAAAGATAGTGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Art4	FBgn0037770	FBtr0082150	3	1	1	95	3R	5809713	5809789	ATCACGCAATTCTTCAAGC		59	5809636	5809654	TAGTGCGGATGCATAAGTC		59	NA	
Drosophila melanogaster	50	Rpt3R	FBgn0037742	FBtr0082165,FBtr0082164	2	2	2	60	3R	5581857	5581876	TTAAAGGAGGAAATTGCCCA		59	5581816	5581837	GATCCAGTCCATCATACTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33189	FBgn0053189	FBtr0081940	2	1	1	60	3R	4605973	4605993	AAGATCGAGTGTAAAGTGGTC		59	4605933	4605951	ATTAGGTTCCTGGCAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mkk4	FBgn0024326	FBtr0081892	2	1	1	61	3R	4474724	4474743	TTTGACATCCTATAACGGCA		59	4474617	4474701	GGCAAGTATTGACAAAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3014	FBgn0037519	FBtr0081773	3	1	1	235	3R	3627045	3627253	TTCACTACCTGTCAAGGAC		58	3626828	3626846	AGTAGAAGTTCCGCTTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	NPFR1	FBgn0037408	FBtr0078590	2	1	1	126	3R	2018360	2018990	GATATCAGGTGATCGTGTACC		59	2019078	2019096	ATCAGCTCCTTGTAGACGA		59	NA	
Drosophila melanogaster	50	CG11438	FBgn0037164	FBtr0078504	1	1	1	60	3L	22460664	22460682	TTCCTCTTCGTCATGTTCG		59	22460704	22460724	GGTGGTAATAGTCGATGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7597	FBgn0037093	FBtr0078357,FBtr0078358	2	2	2	115	3L	21513430	21513511	TACGGACAGGTTTACAAGG		58	21513590	21513608	TTGATTTCACGAACAGCTG		58	NA	
Drosophila melanogaster	50	CG33056	FBgn0053056	FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311	3	5	5	132	3L	21191820	21191990	GGAACATATGAGGGAGCAC		59	21191706	21191726	AATTATGTCCACGCTATCCTC		59	NA	
Drosophila melanogaster	50	CG17145	FBgn0036953	FBtr0074823	3	1	1	112	3L	20214958	20215037	AAATTTGGTGCCATACTGG		58	20215112	20215131	CGGATCACCGTATTATTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14098	FBgn0036884	FBtr0074936	3	1	2	76	3L	19539056	19539243	ATTGTACAGGTTCATCTGTG		57	19539282	19539300	TGATTATTTGTCCCGTGTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Chd3	FBgn0023395	FBtr0074998	2	1	1	60	3L	19441038	19441057	ACTACGGTCCAGTAATAAGG		58	19441080	19441098	ATTCAGGTCTATTGTGGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fz2	FBgn0016797	FBtr0112890,FBtr0075029,FBtr0075028	2	3	3	67	3L	19137780	19137800	GAAACTGATGATCAGGATTGG		58	19137733	19137751	ATCCGATAACTATGGTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10424	FBgn0036848	FBtr0075033	3	1	1	78	3L	19090456	19090474	CATCCAGTGCTAGACTGTG		59	19090318	19090414	GTCCAATAACAACGACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6485	FBgn0036706	FBtr0075249	3	1	1	60	3L	17313560	17313580	GAGACCATCAAGATAGATCCA		58	17313520	17313539	AGAACATGGTGTAGAACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33061	FBgn0053061	FBtr0113448	1	1	1	168	3L	16323459	16323477	GATCGAGGAGTCCATTTGG		59	16323609	16323687	AAGTGTTGCTCAACTTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6017	FBgn0036555	FBtr0075518	3	1	1	106	3L	15983411	15983430	CTTTATGGGATTCCTCTGGA		58	15983499	15983571	CGAGAAAGTCATCGAATCG		58	NA	
Drosophila melanogaster	50	GXIVsPLA2	FBgn0036545	FBtr0075509	2	1	2	193	3L	15948398	15948494	ACCATAGTCCACCTAAGGG		59	15948714	15948732	TTATTCTGAACCGCTCTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Eig71Eg	FBgn0004594	FBtr0075573	2	1	1	80	3L	15650982	15651001	ATATTGCGGACGAAATAACC		58	15651042	15651118	ACCATAGTTACTATGCACGAG		59	NA	
Drosophila melanogaster	50	CG7924	FBgn0036416	FBtr0075740	1	1	1	60	3L	14226881	14226900	AGTCTGATAATAAGGTGCGG		59	14226923	14226941	CCATGGTTAGGGATACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	stv	FBgn0086708	FBtr0075806,FBtr0113425,FBtr0075808,FBtr0075809,FBtr0075807	2	5	5	74	3L	13475404	13475422	TAAGCTAGACACCATCGAC		58	13475459	13475543	TGAATGCATTTGATAGCCTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Syx13	FBgn0036341	FBtr0075886	1	1	1	178	3L	13038687	13039327	AGCAGATGGATTTCATCGAG		59	13039468	13039486	CAGTTTGGCAACGATAACG		59	NA	
Drosophila melanogaster	50	Gr68a	FBgn0041231	FBtr0076118	2	1	1	60	3L	11744686	11744704	GGTGGTATTATCGAGTGTG		57	11744728	11744746	GGCAATATCGTGAAGAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gap1	FBgn0004390	FBtr0076368,FBtr0076367	1	2	2	88	3L	9835628	9835646	CTGTGATATACCGCTCCAG		59	9834654	9835577	TGTGCACAATCTTAAAGCAG		59	NA	
Drosophila melanogaster	50	CG32038	FBgn0052038	FBtr0076462	3	1	1	68	3L	9445254	9445399	GGAGCGGATAACGATACAC		59	9445431	9445449	ACGGAGTAGTTGAAGTACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	MTF-1	FBgn0040305	FBtr0113323,FBtr0113322,FBtr0076459	1	3	5	104	3L	9427511	9427529	CTCAGTCGCTATAGATGCA		58	9427597	9428973	TTTAAAGCTGTAGTCGCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rdl	FBgn0004244	FBtr0076535,FBtr0076536	1	2	3	101	3L	9152784	9152802	TGAGTAGTGTTGGCATGAG		59	9148402	9152720	AATAGTTGCCTGTGGTTAGG		59	NA	
Drosophila melanogaster	50	h	FBgn0001168	FBtr0076569,FBtr0100153	1	2	2	91	3L	8670523	8670543	CTCAATGAACTCAAGACTCTG		58	8670733	8670751	GTCTTCTCCAGAATGTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6673	FBgn0035906	FBtr0076654	2	1	2	141	3L	8514772	8514849	AAACGATTTGAGAAGCTGC		59	8514649	8514667	TGAAGGCAATGTCGTACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	exex	FBgn0041156	FBtr0076751	1	1	1	156	3L	7943382	7943400	TCAAGAAGCCAATACCACC		59	7943520	7943673	TTATGACCCATGGGTATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9948	FBgn0035721	FBtr0076896	3	1	1	60	3L	6949965	6949983	CAGAACGAAGGATTACAGC		58	6950007	6950025	GACTGATTACTCAAGGCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Usp36	FBgn0035633	FBtr0077104,FBtr0077103,FBtr0077099,FBtr0077100	1	4	6	83	3L	5765468	5765543	AGAAGAAGGTATCTGCCAC		58	5765590	5765608	TCATGGAGAATCGCTTCAG		59	NA	
Drosophila melanogaster	50	sinu	FBgn0010894	FBtr0077136	2	1	1	61	3L	5554199	5554217	TTCTTCTACACTTTGGCCT		58	5554156	5554174	ATGAAGACCAGTACTCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4623	FBgn0035587	FBtr0077167	2	1	1	243	3L	5135527	5136193	AGTTCTTATGGTCTTCTACGAG		59	5136454	5136473	CAGCATTTGATCGAATTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11594	FBgn0035484	FBtr0073283,FBtr0073285,FBtr0073284	2	3	3	123	3L	4023613	4023693	AGTGATTACTGGACTGGAC		58	4023450	4023468	TCTACCGTACTGGTAAAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG32306	FBgn0052306	FBtr0072894,FBtr0072892,FBtr0072893,FBtr0072895	3	4	4	84	3L	2464050	2464068	TGAAACTACCGCAGATCAC		59	2464115	2464134	GAGTAGTGATCCATGGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13936	FBgn0035282	FBtr0072868	1	1	1	80	3L	1851410	1851671	AACGTTCAGTATATGTCGC		57	1851348	1851366	TCAGTAGGAATTGAAGCCA		58	NA	
Drosophila melanogaster	50	CG17249	FBgn0035249	FBtr0072810	1	1	1	60	3L	1646920	1646941	CCTTCACTAAGAGATTTCTCAG		57	1646881	1646899	CTTTGTTCTTAGCCCTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33230	FBgn0053230	FBtr0072757	2	1	1	60	3L	1619985	1620003	CAATCTAAGGGTTGTGCTG		58	1620026	1620045	GAGGATGTTGGGAAAGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9192	FBgn0035193	FBtr0072734	3	1	1	60	3L	1237924	1237944	TTTAATCCATACGGTGGTCAG		59	1237884	1237902	CGTTATAGCCTCCAAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LysX	FBgn0004431	FBtr0072637	1	1	1	73	3L	1195084	1195102	ATGGATCCAACGACTATGG		58	1195029	1195047	GGAGAACTTTCCACTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me28S-A2589c	FBgn0086025	FBtr0114301	3	1	1	69	2R	17219094	17219112	ACTGTCACTGATAGTTGGA		57	17219145	17219163	AAATGCGAACATCCTAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ST6Gal	FBgn0035050	FBtr0072441,FBtr0072442	2	2	2	253	2R	20579631	20579649	CAACTACGAGCTGTACAGG		59	20579226	20579308	CGGAATTCATCTCTTTGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3511	FBgn0035027	FBtr0072309	2	1	1	80	2R	20459785	20459806	CACATCAAATTCTGGAAGAAGG		59	20459845	20459922	TGATTTGATGGGTACTAGGTG		59	NA	
Drosophila melanogaster	50	CG13557	FBgn0034867	FBtr0072019	3	1	1	102	2R	19363882	19363901	TATTTCTTCTGGGTCTTGCA		58	19363514	19363818	CATAGCGACTGGTAGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6044	FBgn0034725	FBtr0071823	3	1	2	97	2R	18294763	18294781	TGTGGATATCTATGTGCCG		58	18294971	18294989	CCTTGTACCAGAGAACGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30296	FBgn0050296	FBtr0113369,FBtr0071527,FBtr0113370,FBtr0113371,FBtr0071528	3	5	5	60	2R	16911583	16911601	GAAGAAGTCTACGACTCGG		59	16911625	16911700	TGCTAAGAATGATGGCTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Mgat1	FBgn0034521	FBtr0086259	1	1	1	80	2R	16447789	16447868	AACCTGATTAGAATCGAAGGTC		59	16447730	16447748	ACCCAGCATCTTAGTTGTC		59	NA	
Drosophila melanogaster	50	Obp56c	FBgn0046879	FBtr0086479	3	1	2	60	2R	15588018	15588036	ATCTGAAGCATAATGAGCC		57	15587976	15587995	AAATCCAGGGTCTCATACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30115	FBgn0050115	FBtr0086717	2	1	2	87	2R	14446959	14447037	CATCAAGGGATACCTGCAG		59	14446890	14446909	AATCTCTTCAATGTTGGCGA		59	NA	
Drosophila melanogaster	50	CG5742	FBgn0034304	FBtr0086780	1	1	1	60	2R	14037958	14037976	GCGATACGAGGAATCAGAC		59	14037916	14037936	CAGTATATCGGTCGACATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30110	FBgn0050110	FBtr0086820	1	1	1	60	2R	13768648	13768669	GTTAGTAACCCAAAGGTTAGAG		58	13768609	13768630	CATTCGCATCTTTAGGTTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lack	FBgn0029006	FBtr0086833	3	1	1	80	2R	13481495	13487361	GCAAGGATTTATTTCGTCTACC		59	13487401	13487420	TTATTTCCGTCGAGTACACC		59	NA	
Drosophila melanogaster	50	CG4398	FBgn0034126	FBtr0087157	2	1	1	60	2R	12320223	12320241	TCGAGTTCAGAGTTCACAC		59	12320265	12320283	GCGTTAGTATTTCACGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cato	FBgn0024249	FBtr0087183	3	1	1	82	2R	12165445	12165465	GTCCATTGACCAGAAATTGTC		59	12165383	12165401	TGTTGAGAAGATCGCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jhedup	FBgn0034076	FBtr0087222	2	1	1	80	2R	12004989	12005064	GTCTACAGACCGAAGAATCG		59	12005107	12005125	AGATCCGCTAAAGAAACCG		59	NA	
Drosophila melanogaster	50	Asph	FBgn0034075	FBtr0087218,FBtr0087221,FBtr0087220,FBtr0087219	1	4	4	219	2R	11999636	11999708	TGAAGACGAAGACGAAGAG		59	11999891	11999909	TTCTACAGTTGCCTCTACG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG8102	FBgn0034007	FBtr0087393	3	1	2	125	2R	11185422	11185497	ATGGATCATGAAGCAGTGG		59	11185315	11185333	TCATGTCGCAGGATATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mars	FBgn0033845	FBtr0087668	2	1	1	78	2R	9391978	9391996	TTTACGCGTTACTCAGTGG		59	9392038	9392113	CTTCTTTAACCGTCGTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cid	FBgn0040477	FBtr0087667	1	1	1	71	2R	9373779	9373797	CCTACATGCTAACCAAGCA		59	9373832	9373850	AGATGTAGGCCATCAATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13148	FBgn0033767	FBtr0087847	2	1	2	61	2R	8574566	8575103	AATGTCGAGGATAATGAACCC		59	8575126	8575144	TCATCATCCAGGTCATCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34054	FBgn0054054	FBtr0100109	3	1	1	89	2R	7297500	7297602	TAATACTTGCTGGCCAGTC		59	7297429	7297447	TGGAGCTTACTACATTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30033	FBgn0050033	FBtr0088117	1	1	1	74	2R	7180097	7180115	GATCATCACTCCGTCACTG		59	7180153	7180230	ATGCCAGTGAAGTATGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13216	FBgn0033591	FBtr0088193	1	1	1	60	2R	7126000	7126018	CCCATGTATGGAAACTCCC		59	7125958	7125976	TGGGCACAAATCCATTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12902	FBgn0033512	FBtr0088357	1	1	2	263	2R	6242781	6243011	TCTTAGACAGCGATTCCAG		58	6242536	6242554	GTCAGTCCTACTTCTTGGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12911	FBgn0033501	FBtr0088336	2	1	1	106	2R	6146864	6146882	ATGGAGGATCATACGATCG		58	6146952	6147034	ATCGTAGTAGCGATCTCTG		58	NA	
Drosophila melanogaster	50	unpg	FBgn0015561	FBtr0088586	2	1	1	73	2R	5083611	5083629	ACATTAGCCTGACCATGTC		59	5083665	5086598	ATTGGTATAGGCTCCATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sep5	FBgn0026361	FBtr0088876,FBtr0088877	3	2	2	60	2R	3848536	3848555	GTTTAAGGAACGCATAATGG		57	3848495	3848513	GGGAAACTGGTATATGCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lin19	FBgn0015509	FBtr0088845,FBtr0088847,FBtr0088848,FBtr0088846	1	4	4	93	2R	3806337	3806416	GCGAAGAGGTTCTTATCGA		59	3806473	3806491	ATCCGTTTCAGATCATCGT		58	NA	
Drosophila melanogaster	50	CG12824	FBgn0033222	FBtr0088830,FBtr0113050	2	2	2	293	2R	3678003	3678082	GAATTATCCTACGCATTTGGAG		59	3678389	3678407	CATAGAATGCCATTCCGAG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Ogt	FBgn0040295	FBtr0086085,FBtr0086084,FBtr0086086	3	3	3	80	2R	1208104	1213313	GCACGAATATTTGATAGAGCTG		59	1213354	1213372	ATTGCCATGAACTACAGCA		59	NA	
Drosophila melanogaster	50	snRNA:U4:39B	FBgn0003930	FBtr0081489	2	1	1	85	2L	21215133	21215151	CAATGAAGTCCTCCTGAGG		59	21215066	21215084	TAGTGGACGGTATTTCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3635	FBgn0032981	FBtr0085951	3	1	1	126	2L	22183365	22183384	CTGATATGTGAGCACATCTG		58	22183614	22183632	ATCATACTGTCGGAAGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31751	FBgn0086909	FBtr0081092,FBtr0081093	1	2	2	69	2L	18682373	18682446	GATGCTGCTTTACTTGGGA		59	18682478	18682497	ATACTTTCCTGTTGCATTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	amos	FBgn0003270	FBtr0081081	1	1	1	67	2L	18596360	18596378	TACGAAACTCTGCAAATGG		58	18596311	18596329	TAGTAGTCTCTGGACAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	qua	FBgn0003187	FBtr0080997,FBtr0080996	1	2	2	96	2L	17489498	17489518	CGTATCTGGGAAACATATCCT		59	17489361	17489440	GATCGAACATCGTAACCCT		59	NA	
Drosophila melanogaster	50	CG12455	FBgn0028859	FBtr0080823,FBtr0080822	2	2	2	92	2L	16237369	16237387	TGGGTGTTAATGGCTACTC		58	16237443	16237525	TCATCTTTCCATTGGTCCC		59	NA	
Drosophila melanogaster	50	CG12448	FBgn0028857	FBtr0080795	2	1	2	128	2L	15942409	15942486	ACTATTCAACCAAACGTCG		58	15942578	15942596	TAATGTTACGATCCTGTGC		57	NA	
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0080711,FBtr0100613,FBtr0080712	2	3	7	174	2L	15261626	15261725	TGGAAATTGAATGCGATACG		58	15261471	15261491	GTCCTAAACGTTGTAGTTGTG		59	NA	
Drosophila melanogaster	50	cenG1A	FBgn0028509	FBtr0080548,FBtr0080546,FBtr0080547	2	3	3	149	2L	13896606	13896624	AGGAGATCTTCAAGAGCCT		59	13896737	13896819	TAGCCCATTCAGGATTTGG		59	NA	
Drosophila melanogaster	50	Rep4	FBgn0028406	FBtr0080478	2	1	1	131	2L	13285634	13285706	TCATTACAACAGATGCCGA		58	13285521	13285539	CATACTCCGTTATCATGCG		58	NA	
Drosophila melanogaster	50	PICK1	FBgn0032447	FBtr0080396,FBtr0080395	2	2	2	98	2L	12696293	12696314	TCGTCATTACAAAGGATCAGAG		59	12696373	12697478	TTCCATCGAAGATCTGCAC		59	NA	
Drosophila melanogaster	50	CG4972	FBgn0032217	FBtr0079988	2	1	1	115	2L	10316274	10316292	CACCGAAGTATCGACTCAG		59	10316371	10316453	CACAAACTCAACGTTCTGC		59	NA	
Drosophila melanogaster	50	CG18619	FBgn0032202	FBtr0089738,FBtr0089735,FBtr0089737,FBtr0089736	3	4	4	200	2L	10264619	10264767	TGAAAGCCAAACTAGAACG		57	10264990	10265010	GAAGTAACTGGTCATTGTTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18619	FBgn0032202	FBtr0089738,FBtr0089737	1	2	4	199	2L	10264620	10264768	GAAAGCCAAACTAGAACGC		59	10264990	10265010	GAAGTAACTGGTCATTGTTGG		59	NA	
Drosophila melanogaster	50	CG13101	FBgn0032084	FBtr0079783,FBtr0079784	2	2	2	83	2L	8978779	8978870	CCAGAATATGCGGATAAACTG		58	8978716	8978736	CAGAGATATGATGTGCATACC		58	NA	
Drosophila melanogaster	50	poe	FBgn0011230	FBtr0079545	3	1	1	81	2L	8056363	8056381	TCTTATTCGTGTCCTAGCC		58	8056245	8056319	CAAAGTGTCCTTGAAATGCT		58	NA	
Drosophila melanogaster	50	CG7115	FBgn0027515	FBtr0079523,FBtr0079524	1	2	2	125	2L	7822989	7823007	TCAAGATGATGGAGCTGTC		59	7823092	7823465	CCTCGATAATAAACCTATCCTCC		59	NA	
Drosophila melanogaster	50	CG3476	FBgn0031881	FBtr0079389	3	1	1	108	2L	7028577	7028595	CATCAACTATTCTGTCCGG		57	7028727	7028745	TTGTATGTTCCCTCAGGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hrb27C	FBgn0004838	FBtr0079347,FBtr0079348,FBtr0079346	1	3	3	169	2L	6924245	6924263	ACCTTCTTTAACCGCTACG		59	6924396	6924698	TTCTTGATTTCGACCTGCT		59	NA	
Drosophila melanogaster	50	CG11015	FBgn0031830	FBtr0079288	2	1	1	285	2L	6558501	6558519	GACATGAAGGTCTTCAAGC		58	6559115	6559133	ATTTGGACAGCTAAGTGGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG9511	FBgn0031810	FBtr0113025	2	1	2	95	2L	6408282	6408300	AGATACTGGAAGTGAAGGC		58	6407521	6407541	GGGTATTTAAAGTGGGAAAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9147	FBgn0031774	FBtr0079190,FBtr0079189	1	2	2	144	2L	6067221	6067292	GGTACTTGAGAAGCTGGTG		59	6067399	6067418	CTTCTCCAGACGGTATTGAC		59	NA	
Drosophila melanogaster	50	bchs	FBgn0043362	FBtr0079144	1	1	1	80	2L	5912387	5912470	TCTAAGCGTCAGTTTCTCTG		59	5912511	5912531	GCAATACTGTATAGTAGCCGA		59	NA	
Drosophila melanogaster	50	CG11147	FBgn0031734	FBtr0079165,FBtr0079166	2	2	2	81	2L	5735111	5735129	TCCAGGAACCAATCTTTGG		59	5734812	5735068	AAGAAGACCATGGTCATTACC		59	NA	
Drosophila melanogaster	50	Sr-CIII	FBgn0020376	FBtr0077466	1	1	1	133	2L	4121075	4121094	GCCATTCCTTATGGTTTCAG		58	4121187	4121268	GAGTTTGGTGCAGATATTTCTG		59	NA	
Drosophila melanogaster	50	CG31959	FBgn0051959	FBtr0077488	2	1	1	186	2L	3758662	3758742	GATATTCGGGAACAGTACTG		57	3758891	3758909	TTTCAAATGGAGCATAGGC		58	NA	
Drosophila melanogaster	50	CG34394	FBgn0085423	FBtr0112638,FBtr0112640,FBtr0112641,FBtr0112639	2	4	4	81	2L	3364931	3365435	TGATTGTGGACTACTCGTG		59	3364868	3364886	AAGCAGACGTAGTTCTGTG		59	NA	
Drosophila melanogaster	50	CG17221	FBgn0031500	FBtr0077654	2	1	2	218	2L	3040732	3040801	TCATACTGTCTTGCTCCTG		58	3040982	3041001	GGACTTGAGGATTTGTATGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG31689	FBgn0031449	FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706	3	4	4	83	2L	2738710	2738728	AGGAGACCTTCAACAACTG		59	2738773	2738878	AGAAGATGATATGGACTGGTG		58	NA	
Drosophila melanogaster	50	CG10869	FBgn0031347	FBtr0113010	1	1	2	151	2L	1586773	1586854	TACTGACCTTGGGTAACAC		58	1585158	1585176	ATAGTATCCCATGATGCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18131	FBgn0031343	FBtr0077939,FBtr0077937,FBtr0077934	2	3	6	172	2L	1499602	1499623	GTGCCTCTATATGAAAGAAGAC		58	1499315	1499333	TGATGCTGATGATGTTGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3883	FBgn0031281	FBtr0078041	2	1	1	82	2L	815216	815289	TGGGAGCTGATCAATAATGTC		59	815154	815172	TTTAGCACTTCGTTCACCA		59	NA	
Drosophila melanogaster	50	Eaat2	FBgn0026438	FBtr0078043	2	1	2	86	2L	740682	740812	GGTGTAATACTAGGACTCTCCT		59	740617	740635	CATAAACAGTTCGCCAGGA		59	NA	
Drosophila melanogaster	50	CG2839	FBgn0031273	FBtr0077999	3	1	1	60	2L	626021	626039	AGAAATCCTTACGGAAGGC		59	626060	626081	GAAACATTTCTGGTATCCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ets21C	FBgn0005660	FBtr0112854	3	1	2	258	2L	548208	549034	TCTTCAATGATCCGTACCAG		59	547892	547987	TAGTAGTACCTGAGTGCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	tRNA:Y1:85Ac	FBgn0012026	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me18S-G962	FBgn0086077	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Cyp311a1	FBgn0030367	FBtr0073640,FBtr0073639	2	2	2	108	X	11924493	11924511	CAAATTCGAGGGTCAATCG		58	11924350	11924369	ATATAGCACAAACGACATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CkIIbeta	FBgn0000259	FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559	1	5	6	162	X	11689033	11689147	TGTTCCAAGGCTATATGGA		57	11689687	11689705	TTGTATTCGTGCGTATGTG		58	NA	InUTR
Drosophila melanogaster	50	CG3032	FBgn0029928	FBtr0071032	1	1	1	60	X	6907576	6907595	GAATCCGTACGAGAACTCTG		59	6907535	6907553	TCTTCAAGGGTTCCTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070769,FBtr0070766	3	5	7	96	X	5292152	5292440	AACTGACATGGCTAAGACAC		59	5292498	5292517	CTCTAGGTTGGTTAAACGCT		59	NA	
Drosophila melanogaster	50	CG32773	FBgn0052773	FBtr0070703	1	1	1	60	X	4282037	4282055	ACAAGGACATCGAGATGTC		59	4281995	4282013	GGAAGAAGGACGAAGTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15570	FBgn0029697	FBtr0070645	3	1	1	90	X	4115320	4115407	TAATGCTAACATCGATCCTAGC		59	4115458	4115476	ATTAGCCAATGCATCAACG		58	NA	
Drosophila melanogaster	50	CG14047	FBgn0040390	FBtr0070465,FBtr0070464	2	2	2	205	X	2262912	2262931	TTTATAAAGCGTCGCAACTC		58	2262667	2262744	GATGGCTTGTCGTTATCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG17691	FBgn0039993	FBtr0113760,FBtr0113759,FBtr0113761	2	3	4	102	U	1184287	1184359	CATGTGCTATTAGAAGTAGCAG		58	1184422	1184440	AAATGGTAATAGCGTCCCA		58	NA	InUTR
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	3	8	8	80	4	671648	672941	TAACAGCACAGATTGATGGT		59	671587	671605	TCAAATACGGGTGAAAGCT		59	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	3	7	7	85	4	208987	209060	CGGATCATAGACTTACGGA		57	208920	208938	ATCGAAGCATGGTTTAGTC		57	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	3	14	14	110	3R	27690344	27690864	TAAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	hdc	FBgn0010113	FBtr0085621,FBtr0085619	2	2	3	139	3R	26105940	26105958	GGAGGTCGAACTCTATTCC		58	26134965	26183984	CCTCGTCCTCAATCTTGAC		59	NA	
Drosophila melanogaster	50	Hrb98DE	FBgn0001215	FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301	3	4	6	95	3R	24429337	24429355	CAATCAAGGCAACTATGGC		59	24429413	24429794	TTACTTTATCACCTCGTCCG		59	NA	InUTR
Drosophila melanogaster	50	CG5611	FBgn0039531	FBtr0085199	3	1	1	64	3R	23460979	23460997	CAATGCCTACAACAAACCA		58	23460933	23460954	CTGAGGTAACATTCATGATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpn9	FBgn0028691	FBtr0084469	2	1	2	117	3R	19558592	19558611	CTAATGTCACCGCCTATCTG		59	19558439	19558457	TTGATGGTCAGCTCATTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33107	FBgn0053107	FBtr0084279	2	1	1	108	3R	18410053	18410071	GATGATGACGTACCAAAGG		57	18409905	18409981	GTAGAACATCTCCTCCGAG		58	NA	
Drosophila melanogaster	50	Surf4	FBgn0019925	FBtr0083118,FBtr0083117	3	2	2	82	3R	11170644	11170663	GATTTAAGGTCGACATAGCG		58	11170516	11170534	GAAGTCCCACAGAATGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6904	FBgn0038293	FBtr0083037,FBtr0083035,FBtr0083036	3	3	3	98	3R	10968575	10968688	TGGGCATTTACTACAGACAG		59	10968496	10968515	TCAAGTTGTTCTTCGATCCA		59	NA	
Drosophila melanogaster	50	CG7381	FBgn0038098	FBtr0082727,FBtr0082726,FBtr0082725	1	3	3	80	3R	8795258	8795366	CGATGAGAAGAAGTATGGC		57	8795196	8795215	TTCTTGGAACAAATCGAGTG		58	NA	
Drosophila melanogaster	50	CG14687	FBgn0037835	FBtr0082280	1	1	1	66	3R	6618817	6618835	CATTAAGATTCAGGCCGGA		59	6618865	6618883	ATTCTTGCTGGATCGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10092	FBgn0037526	FBtr0081752	2	1	1	166	3R	3714212	3714291	ACATAAGTGCCACTACCAG		58	3714421	3714439	CTTGATTCCTGTGTCACCA		59	NA	
Drosophila melanogaster	50	CG18748	FBgn0042105	FBtr0113344,FBtr0113345	3	2	2	191	3R	3612901	3612979	ACTCTGTTTCACAGGTTCC		59	3612728	3612747	ATAGTCCAACCTTCACTTCG		59	NA	
Drosophila melanogaster	50	plx	FBgn0004879	FBtr0078718,FBtr0078719	1	2	2	80	3R	1536521	1536539	ACCATCACCTAGAAATGCT		58	1536583	1536668	TCGAAGATTGAGCAAACTG		58	NA	
Drosophila melanogaster	50	CG2016	FBgn0037289	FBtr0078847	3	1	1	98	3R	782940	783024	AACACAGTGATACAGGCTG		59	782860	782878	CAGAGTGAGTTTGGTCCTG		59	NA	
Drosophila melanogaster	50	CG33056	FBgn0053056	FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311	2	5	5	131	3L	21191820	21191990	GGAACATATGAGGGAGCAC		59	21191707	21191726	ATTATGTCCACGCTATCCTC		59	NA	
Drosophila melanogaster	50	chb	FBgn0021760	FBtr0089462,FBtr0089460,FBtr0089461	3	3	3	60	3L	21173982	21174000	GGCTCTTCATCTTGTTGAC		58	21174023	21174042	ATCGAATTGAGTAGATCGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5567	FBgn0036760	FBtr0075161	2	1	1	60	3L	17836429	17836447	CTCCTGGAATTATCCTCCG		58	17836387	17836406	TTATTACACTGTCGAAGCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34248	FBgn0085277	FBtr0112442	2	1	1	118	3L	16263663	16263682	TATCCTTTGTTCTACCCAGC		59	16263564	16263582	TCCTTTGACCACCTTATGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG10743	FBgn0036376	FBtr0075814,FBtr0075813	2	2	2	102	3L	13507881	13507899	CTGCTATGAGGACAATTGC		58	13508023	13508044	CATCTTTAGGTTTAGCTCTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10960	FBgn0036316	FBtr0075942,FBtr0075943,FBtr0075941	3	3	3	134	3L	12820167	12820185	TATCCTGTTCGTCTATGCC		58	12819717	12820070	TCTTTGGAAACCAAGTAGGT		58	NA	
Drosophila melanogaster	50	CG3967	FBgn0035989	FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480	1	5	5	116	3L	9411532	9411550	AACAATTTCGTGCTCTACG		58	9410905	9411452	TGTGTTAGGACTGTTTGTG		57	NA	
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780	2	8	8	127	3L	7811267	7811287	CAGATGACAAATACAAGGAGG		58	7810754	7811178	GTCGGCATATTGTGTTACC		58	NA	
Drosophila melanogaster	50	Uev1A	FBgn0035601	FBtr0077155,FBtr0077156	2	2	2	139	3L	5357292	5358043	AACACCATTCGAGAATCGA		58	5357103	5357189	ATCTATGATCAACCACGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14959	FBgn0035427	FBtr0073049	1	1	3	80	3L	3267485	3267504	AGCTTTAACCAGGAGTACAG		59	3267545	3267682	ATCGTTCAGTAATCTTACGGG		59	NA	
Drosophila melanogaster	50	CG11537	FBgn0035400	FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117	2	5	5	82	3L	3130293	3130312	GAGGTCTCGGTCTTTATAGC		59	3130170	3130248	CCAAACACTTGCATGAAGG		59	NA	
Drosophila melanogaster	50	CG11537	FBgn0035400	FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117	2	5	5	82	3L	3130293	3130312	GAGGTCTCGGTCTTTATAGC		59	3130170	3130248	CCAAACACTTGCATGAAGG		59	NA	
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	2	8	8	81	2R	19817734	19817752	TCCATCTTCCTTACTGCTG		58	19817612	19817691	CATCAGTAACCAAGTTAACCC		58	NA	
Drosophila melanogaster	50	RpS16	FBgn0034743	FBtr0071855	1	1	1	154	2R	18494546	18495270	CCAGAAATACGTCGATGAG		57	18495388	18495406	TTTAACGGTACGACTTCTG		57	NA	
Drosophila melanogaster	50	Obp46a	FBgn0033508	FBtr0088359	3	1	1	64	2R	6199173	6199191	ATACGAGACGGATGAAGAG		58	6199076	6199094	TACTGTTGAAACTGCACTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Mmp2	FBgn0033438	FBtr0088500	3	1	2	140	2R	5545212	5545230	TTGACATGAAAGAGTCACG		57	5530973	5545110	GATACATACCCATCAAGAAGG		57	NA	
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	1	9	9	90	2R	4568146	4568164	AGATCAAGACCTGCTTGTG		59	4568217	4568299	ATATCACGGTAGTCCATGAC		58	NA	
Drosophila melanogaster	50	Optix	FBgn0025360	FBtr0088865,FBtr0088866	3	2	2	124	2R	3929497	3929515	ATCACATGATATCAGCGGG		59	3929603	3929621	GAATAGCTGGGCCTTAGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG30437	FBgn0050437	FBtr0086065	3	1	3	117	2R	1328564	1341070	TAGTCGATGAAGTTGTGCC		59	1341150	1341169	AAGTATTCGGGAGGAATGTC		59	NA	
Drosophila melanogaster	50	CG17082	FBgn0039994	FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289	2	6	6	90	2R	644086	644172	TCTATTGGTCGATCAAAGGAG		59	644224	644242	CATTCTCTGAGGCTGACAG		59	NA	
Drosophila melanogaster	50	CG41436	FBgn0084003	FBtr0111260	2	1	1	80	2L	22078343	22078361	TATACTTTATGGCGCCAGG		59	22078405	22078423	TTGTATCGCAATCACTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33807	FBgn0053807	FBtr0091811	1	1	1	70	2L	21432295	21432313	AAATTTAGAGGAACGTGGC		58	21432346	21432365	CGCATTTATAAGTGGCAGTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hr38	FBgn0014859	FBtr0081397,FBtr0081398	2	2	2	208	2L	20687063	20687264	TAACCCTGATCACAGAACG		58	20686873	20686892	CAGCTTCAGGTAGAAGATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG16771	FBgn0032779	FBtr0081204	2	1	1	60	2L	19428124	19428145	CAGAGCATAAACGTAATCATGG		59	19428166	19428184	AACCGGTTACATCTGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst35Ba	FBgn0013300	FBtr0080682	3	1	1	141	2L	14879255	14879274	GCTCTCGGAGAATAGAAAGG		59	14879084	14879102	GGAAAGGATATGCCTGGAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15293	FBgn0028526	FBtr0080603	1	1	1	60	2L	14108334	14108352	ACAAGTGAATCTGAGTGCC		59	14108292	14108312	AATAGTCTTGACCACTTCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14928	FBgn0032362	FBtr0080238	1	1	1	180	2L	11507298	11507316	CAAGTCTGGACTGCTAAGG		59	11507517	11507537	GAAGGGATAGAGATTGAGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13136	FBgn0032186	FBtr0079965	2	1	1	65	2L	10136693	10136711	GACAACACAGTGCAATACG		59	10136646	10136667	CTGTAATCTTCACTTGCATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13135	FBgn0032184	FBtr0079966	1	1	1	118	2L	10122713	10122731	ATCACTACTGATCGTTGGC		59	10122613	10122631	TATCTGTGCAATCGATGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gcm2	FBgn0019809	FBtr0079838,FBtr0079837	2	2	2	83	2L	9611428	9611447	TTAGCAAGGTTCTTAAGCGT		59	9611493	9611570	TGCCACAGGCATTATACTG		59	NA	
Drosophila melanogaster	50	nrv2	FBgn0015777	FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382	3	5	5	89	2L	6791573	6791591	TTTGATCTGGTACAAGGGC		59	6791308	6791520	CCAGGTACTTTGTACACCG		59	NA	
Drosophila melanogaster	50	cort	FBgn0000351	FBtr0079320	1	1	1	80	2L	6675693	6675770	AAACTATCCAGTTCTGGACC		59	6675632	6675650	GACTTGAAGAACAGCTTGC		59	NA	
Drosophila melanogaster	50	CG33995	FBgn0053995	FBtr0100048,FBtr0100050,FBtr0100049	3	3	3	80	2L	5045911	5046150	TTATCGGCGCTAGAAATCC		59	5046193	5046212	CATGTACTCGTTGTAGTCCT		58	NA	Nonspecific
Drosophila melanogaster	50	vkg	FBgn0016075	FBtr0079036	1	1	1	81	2L	5013429	5013509	CAGTTACTTCATGAGCACCT		59	5013367	5013385	GAACTCCTCCAAGCAAGAG		59	NA	
Drosophila melanogaster	50	Rtnl1	FBgn0053113	FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039	3	7	7	144	2L	4994705	4994794	CCCTTTAAGGATTACCTGGA		58	4994580	4994601	TGATCGAATCGATGATATCCTC		59	NA	
Drosophila melanogaster	50	capu	FBgn0000256	FBtr0077511,FBtr0077513,FBtr0077512,FBtr0077510	1	4	4	85	2L	3879058	3884044	AGTTCGAAGGTCAAATGCT		59	3878991	3879009	TTCCTGATTAGCATCACCG		59	NA	
Drosophila melanogaster	50	CG12506	FBgn0031276	FBtr0078003	1	1	1	67	2L	773848	773866	ACAGTACCACAACTTCGAC		59	773897	773915	CGAAGAGGAAACCTCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10993	FBgn0030524	FBtr0073837	3	1	1	123	X	13684735	13684812	CAGAAGCTGTCAAGAAAGC		59	13684630	13684648	TCTTGTGCGTGGATATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2124	FBgn0030217	FBtr0071491	2	1	1	90	X	10492008	10492026	GATAAGGATCGTTTCACCG		57	10492080	10492364	ACTCGTGCCAATAGATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3699	FBgn0040349	FBtr0070186	1	1	1	117	X	841163	841181	GTCATTCTGTTGACCAAGG		58	841064	841082	AAACTCCATAGCTCAGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7896	FBgn0039728	FBtr0085545	1	1	1	93	3R	25812819	25812837	ACTTCTTCGGTCAGTTTCC		59	25812894	25812976	TAGTCCAATTGCTGTAGCA		58	NA	
Drosophila melanogaster	50	m4	FBgn0002629	FBtr0084980	1	1	1	104	3R	21850135	21850153	CTACAGCGTGAAGAAACTG		58	21850049	21850067	AGAGACTCCAAAGAGTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13830	FBgn0039054	FBtr0113272	3	1	1	91	3R	18901583	18901601	ATGCCCAGTACACTTTCAC		59	18901444	18901529	CTTGGAGTCCTTCTTGTAGG		59	NA	
Drosophila melanogaster	50	CG4570	FBgn0037844	FBtr0082287	1	1	1	60	3R	6683264	6683285	CATGGACGATCTTAAATTCGTC		59	6683306	6683324	CGAGTCAAGGAAGATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6838	FBgn0037182	FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186	3	4	4	88	3L	22709292	22709405	TCAGTAAGGATCCAAACCC		58	22709222	22709240	ATTAAGCAGATTCACGCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CS-2	FBgn0029091	FBtr0078476,FBtr0114557	2	2	2	102	3L	21959332	21959350	CTTGGATGAGGATCAATGC		58	21959413	21960242	GTCGAAGAAGATGTTAGTTTCC		59	NA	
Drosophila melanogaster	50	CG9425	FBgn0036451	FBtr0075693,FBtr0075692	2	2	2	74	3L	14786338	14786356	ACCAGAAGGTGATCATGAG		58	14786872	14786890	TGTCCAGTGTATAACCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32111	FBgn0052111	FBtr0075910	2	1	1	92	3L	12638263	12638282	GATATCGTCATTCAGCTTCG		58	12638394	12638471	GTGAGATATCATGTTCTCTAGC		57	NA	InUTR
Drosophila melanogaster	50	PHGPx	FBgn0035438	FBtr0073068,FBtr0073066,FBtr0073065,FBtr0073067	2	4	4	64	3L	3328289	3328307	ATACCTAAAGGCCAAGCAG		59	3328334	3328353	GAAACTTGGTGAAGTTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3611	FBgn0035069	FBtr0072377	3	1	1	89	2R	20686776	20686794	GATCTATCTGACGAGTCGC		59	20686846	20686865	GTAACCACGAACTTCTTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slbo	FBgn0005638	FBtr0072272	2	1	1	240	2R	20220863	20220881	TGATAGACGACCAGTTCAG		58	20220641	20220659	CTGGAATTGTTGTAGGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PIP5K59B	FBgn0034789	FBtr0071901,FBtr0110862,FBtr0071900	2	3	3	100	2R	18763724	18763743	TATATTCTACCTGACGACCG		58	18763803	18763886	GATTCATATAGTAACCAGGCAG		58	NA	
Drosophila melanogaster	50	CG33981	FBgn0053981	FBtr0100025,FBtr0100026	3	2	2	148	2R	13668908	13668926	GACCAGATTCTAGTGCCAC		59	13668717	13668735	TTCAGTTGATCGATGAGGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG10131	FBgn0033949	FBtr0087499	1	1	1	123	2R	10517722	10517740	GAAGAGTCTGTACTCGCAG		59	10517827	10517901	CACTAGCATCTGTTGTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12869	FBgn0033943	FBtr0087496	2	1	1	174	2R	10480530	10480719	CAACGAACTACGATTTGCTC		59	10480856	10480874	AATGTTCAGGTACAGGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Kua	FBgn0032850	FBtr0081336	2	1	1	135	2L	20102121	20102205	GACCAATCAGATACACAAGTG		58	20102302	20102320	AAAGTAGGTCTCATGTGGC		59	NA	
Drosophila melanogaster	50	CG13385	FBgn0032039	FBtr0079660	1	1	1	60	2L	8397270	8397289	ATGTACTAACACCATTGACC		57	8397311	8397330	CAATGTTTCGTAAATCGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hrb27C	FBgn0004838	FBtr0079347,FBtr0079348,FBtr0079346	3	3	3	131	2L	6924283	6924301	TATCATGTACGACCAGGAG		57	6924396	6924698	TTCTTGATTTCGACCTGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Ser12	FBgn0011832	FBtr0077806	2	1	1	60	2L	2250920	2250940	ATAGCCGTAATTAGACTGGTG		59	2250880	2250900	GTTGGATAGGTCTTACTTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mt:tRNA:H	FBgn0013695	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mt:tRNA:R	FBgn0013704	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG17777	FBgn0040900	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR32129	FBgn0052129	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Ntf-2	FBgn0031145	FBtr0077241,FBtr0113007	3	2	2	97	X	20906739	20907434	TTTCTATAGCGCTACCGAC		58	20907495	20907581	TCTGAAAGCTCAGACTCTG		58	NA	
Drosophila melanogaster	50	run	FBgn0003300	FBtr0077279	3	1	1	76	X	20567172	20567190	GTTCCCATTCAACCATGTG		59	20567228	20567248	CAAAGTTATACGGATGGAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp19c	FBgn0031111	FBtr0077326,FBtr0077327	1	2	2	164	X	20289627	20289645	GTAATCGATCGCAACTTGC		59	20289481	20289499	CTTGATCTTCTTGAGCACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	inx6	FBgn0027107	FBtr0077339	3	1	1	60	X	20139582	20139600	CCGAATATCATGGACATCC		57	20139540	20139558	CGAAGATCTTCTCGTTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32537	FBgn0052537	FBtr0074687	2	1	1	190	X	19170264	19170283	GTCATAAAGATTAGCAGCCA		57	19169344	19169362	TTATCATCCACCCAGTCCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG32548	FBgn0052548	FBtr0074569,FBtr0074568	2	2	2	76	X	18330497	18330515	CCTTCCTCGATTATCAGCG		59	18330439	18330457	GTAGTGGTAGAGCTTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	os	FBgn0004956	FBtr0112847	3	1	2	71	X	18201313	18201331	GTGGCAACTATCATCCCTC		59	18201185	18201278	TCAGCTGATTGAAGCTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15814	FBgn0030873	FBtr0074471,FBtr0074469,FBtr0074470,FBtr0074468	2	4	4	98	X	17743221	17743239	CTGATGTTCTGCTTCTACG		57	17743079	17743159	TGTGTAGTAGCCAATAGCT		57	NA	
Drosophila melanogaster	50	CG12991	FBgn0030847	FBtr0074448,FBtr0074449	2	2	2	114	X	17492122	17492140	ATTGGGATCGTACTGTACC		58	17492218	17492313	CATCCGAATTGTCACTCAC		58	NA	
Drosophila melanogaster	50	ppk23	FBgn0030844	FBtr0112998,FBtr0100574,FBtr0074491	2	3	3	123	X	17462375	17462393	CAACAGTCGTTTCAAGTCC		58	17462088	17462223	GATAAAGATACGTGAAGTGCTG		59	NA	
Drosophila melanogaster	50	CG9903	FBgn0030756	FBtr0074297	3	1	1	60	X	16434569	16434587	GTACTCCAAGGATGATCGG		59	16434527	16434548	GAAATCCTCCTTCTTTATCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9911	FBgn0030734	FBtr0074241,FBtr0074242	2	2	4	80	X	16190154	16190350	TAGTTGCGATTCTACAGCT		58	16190092	16190112	CGATATTATCACTGGTCATGG		58	NA	
Drosophila melanogaster	50	Nipsnap	FBgn0030724	FBtr0074258,FBtr0074257,FBtr0074259	3	3	3	278	X	15965372	15965390	TCTTAGCTTGATGCAGGAG		59	15964886	15965070	TGCAGAGATTTGTAACACC		57	NA	DesignRelaxed
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	1	9	9	110	X	15788792	15788878	AGTTACCGAATATGGCGAG		59	15788952	15788970	TTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	CG8952	FBgn0030688	FBtr0074193	1	1	1	60	X	15659852	15659870	GGAAGATGAGTACCTGGAC		58	15659810	15659828	GTCAATGATCTCGACTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15601	FBgn0030673	FBtr0074055	2	1	1	60	X	15605319	15605337	ACAGTGTCGGACATAAAGC		59	15605361	15605379	GCAGCTCCTTAGAGTACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32594	FBgn0052594	FBtr0073956,FBtr0073957	3	2	2	104	X	14925094	14925221	GAATAAATCTCCGCATCGA		57	14925289	14925307	TCATGATCATGTCGATGTG		57	NA	
Drosophila melanogaster	50	Ag5r	FBgn0015010	FBtr0073937	3	1	1	68	X	14679660	14679678	CGATATGTGGTACGATGAG		57	14679610	14679628	TTGTAGTTCGACGGATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL38	FBgn0030552	FBtr0073902	2	1	1	111	X	14121428	14121446	CTTCTATCGTCAGCACCAG		59	14121518	14121609	CTCTTTGATCTTCAAGACATCG		59	NA	
Drosophila melanogaster	50	rdgB	FBgn0003218	FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194	3	4	4	84	X	13663020	13663039	CTATTATCCGGACAATGGCT		59	13663083	13663187	GTCAATTACGTCTACGATACGA		59	NA	
Drosophila melanogaster	50	up	FBgn0004169	FBtr0073851,FBtr0100563,FBtr0073852	3	3	6	151	X	13493488	13494115	ATGAAGAGTACACCAGCTC		58	13490712	13490730	TTTCAGCTGATCATCGAGG		59	NA	
Drosophila melanogaster	50	CG4332	FBgn0030456	FBtr0073726	2	1	1	60	X	13050498	13050516	GTCTATTCGCTCCTCTACC		58	13050540	13050558	CCAGTGAGTTAAGTGTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4318	FBgn0030455	FBtr0073742	1	1	1	60	X	13048639	13048660	GGTCAGTGAGATGAATTATGAG		58	13048600	13048619	CTCAATCAGTTCAACATCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fer3HCH	FBgn0030449	FBtr0073745	2	1	1	60	X	13001868	13001886	GATTCTTCCTAAAGGCGAG		57	13001826	13001846	ATGTACGTCATGATCTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CkIalpha	FBgn0015024	FBtr0073680,FBtr0073682,FBtr0073681	3	3	3	83	X	12550117	12550136	TCTGAACTATTGTCGTAGCC		59	12550182	12550381	GTTCTGAACAGTATGCGGA		59	NA	
Drosophila melanogaster	50	tomosyn	FBgn0030412	FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678	3	4	4	91	X	12531136	12531154	GAGAAGGGAAACATACACG		57	12531208	12531302	GTTCTAACCACTTCAATTGC		57	NA	
Drosophila melanogaster	50	ATP7	FBgn0030343	FBtr0073566	2	1	1	84	X	11756032	11756120	ATGCCCACAAGGTAAAGAC		59	11756167	11756186	AAGAGGGTAACCTTACTGGT		59	NA	
Drosophila melanogaster	50	CG10347	FBgn0030342	FBtr0073602,FBtr0073603	3	2	2	60	X	11747635	11747655	GTGTGGGAGATGATTTAAGTG		58	11747595	11747615	GTTAGTGACAATTCTAGGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr10b	FBgn0030297	FBtr0073550	1	1	1	88	X	11306093	11306209	TACAGACAGTGGGAAATGTC		59	11306024	11306043	ATATCCATTCGAAACATGCC		58	NA	Nonspecific
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073487,FBtr0073485,FBtr0073489	3	3	12	197	X	11284563	11289280	ATCTGGATTCGGTGAATGG		59	11289439	11289459	TGATATCGTTGATGCTCAGAC		59	NA	
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073483,FBtr0073492,FBtr0073491	1	3	12	179	X	11276005	11281814	ATAGCTGATAATCAGCGCA		58	11281957	11282027	TATCTGTGAAGTCTGGGAC		57	NA	
Drosophila melanogaster	50	CG11105	FBgn0030281	FBtr0073465,FBtr0073466	1	2	2	196	X	11119231	11119249	AAATGGATACCAATCGCGA		59	11119005	11119023	CTTGTGGTTGGACTTACGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Vago	FBgn0030262	FBtr0073427,FBtr0100644	2	2	2	60	X	10983570	10983589	CAATCAGCAGTACTGTATGG		58	10983609	10983630	GAAGACTTCACCGATATAAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	flw	FBgn0000711	FBtr0071446,FBtr0071447	2	2	2	80	X	10300725	10300804	GGATTTACGGCTTCTACGA		59	10300847	10300866	GACAGTTGAAGCAATCTGTG		59	NA	
Drosophila melanogaster	50	CG9686	FBgn0030158	FBtr0071389	1	1	1	100	X	9773985	9774003	GAATAGCTTGCAAGGATCG		58	9774067	9774085	CAAGTCCGGGTATCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	t	FBgn0086367	FBtr0071335	3	1	1	146	X	9112808	9112827	CATCAATTTCACCTTCCTGG		58	9112554	9112632	CGATCGAATTGATTGACATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Nrg	FBgn0002968	FBtr0071209,FBtr0071208,FBtr0071207	2	3	3	80	X	8426428	8426448	CGCAACAGAATAAGGAAAGTG		59	8426489	8438893	TCCAACTATATTCTGGCTCG		58	NA	
Drosophila melanogaster	50	Cp7Fc	FBgn0014466	FBtr0071202	2	1	1	60	X	8372126	8372144	TCACCCTTCAATGACTACG		58	8372165	8372186	GCTTATAAAGAAGGTAGGTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trxr-1	FBgn0020653	FBtr0071168,FBtr0071167,FBtr0071169	2	3	3	104	X	8140380	8140398	AAAGATCAAGCCAGACTGG		59	8140466	8140554	TACTCCACTTTCTTGTCGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG1531	FBgn0029985	FBtr0071098	1	1	1	82	X	7844752	7844770	TATTAGCGGATCCCATTGC		59	7844814	7844912	CATGCACGTAAAGTAATCCTG		59	NA	
Drosophila melanogaster	50	CG4607	FBgn0029932	FBtr0071014,FBtr0071013	3	2	2	61	X	6964929	6964949	GAAATCCCTCAGATACTTCCG		59	6965440	6965458	CGAATTCCGGTACGTAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Marf	FBgn0029870	FBtr0070909,FBtr0070910	3	2	3	125	X	6263369	6263388	CTGGAGTTTAAGTTCAGCTG		58	6263476	6263563	TACGCTGTGTCCAATACTG		59	NA	
Drosophila melanogaster	50	Nep1	FBgn0029843	FBtr0070872,FBtr0070873	2	2	2	118	X	5996912	5997001	ACGATATAGTATTTCCTGCTGG		59	5997080	5997098	GAATCCGTGGGTAATCTCG		59	NA	
Drosophila melanogaster	50	cv	FBgn0000394	FBtr0070804	1	1	1	81	X	5586271	5586289	ATATCTGGATCAGTGCGTG		59	5586334	5586419	GTGGAACCATCTCGTACTG		59	NA	
Drosophila melanogaster	50	CG15777	FBgn0029781	FBtr0070854	1	1	1	73	X	5550145	5550163	CAACATACAGGAGACTCCG		59	5550090	5550108	CAATATCCCTATCGCCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070770	3	1	7	97	X	5277591	5277611	CTAATGACAATATGTCCGGGA		59	5277669	5288094	TCATGAAATCTTTCGCACTG		58	NA	
Drosophila melanogaster	50	CanB	FBgn0010014	FBtr0070764	1	1	1	100	X	5226824	5226842	GAATTTAACAATCCAGCGC		57	5227131	5227418	GTTCTCTGGTCTAGATCCA		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG12680	FBgn0029740	FBtr0070726	1	1	1	60	X	4892091	4892112	CACTATACCTTTGGCTCTAGTC		59	4892132	4892151	GATTCGGCAACAAATATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ctp	FBgn0011760	FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704	3	4	4	185	X	4585719	4585738	CAGTGAAGTTGTAAGCACAC		59	4592338	4592356	CTCCTTCTTGATGTAGGCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	yin	FBgn0015565	FBtr0070632,FBtr0070633,FBtr0070631	2	3	3	173	X	3759040	3759114	GATGCCAACTAAAGCTGTG		59	3758885	3758903	AAAGATCCTGCGTTAATGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Crg-1	FBgn0021738	FBtr0070599	3	1	1	296	X	3689012	3689030	CTCTGATTTGTGCGTTCTC		58	3690721	3690739	CCGTTAACGTAGTCTGGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG10801	FBgn0029660	FBtr0070526	2	1	1	159	X	3355835	3355853	TGAATTACTCCTGGACGGA		59	3355976	3356094	ATCAAGGAGCAAATCTCCG		59	NA	
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514	2	9	14	87	X	3215176	3215194	TCTATATCGCTCCGATTCG		58	3215244	3219972	CTGTTCTTTAAACCTTTCGC		57	NA	
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	3	13	13	81	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567131	2567221	CTGTATTGAGAGCTCATGCT		59	NA	
Drosophila melanogaster	50	Unc-76	FBgn0040395	FBtr0070376,FBtr0070377	1	2	2	80	X	1985913	1986003	TCCTGATCAAGATTCTCAAGG		59	1986045	1986063	GCACCTTCAGGATGTAGTC		59	NA	
Drosophila melanogaster	50	CG4199	FBgn0025628	FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333	3	4	6	133	X	1965449	1965467	TAAACACAATGGGTTCCGT		59	1962398	1962416	CATGGTTGTACTGGGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11448	FBgn0024985	FBtr0070225	1	1	1	163	X	1289216	1289286	ATACGCAAATTCTTCCGGA		59	1289413	1289431	AACTCGGATGCTTTAAGGG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG3021	FBgn0040337	FBtr0070173	2	1	1	60	X	921560	921579	TCAAGGACTTCATACAGGAG		58	921690	921708	CTGTCGATGTCTAGGAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dredd	FBgn0020381	FBtr0114561,FBtr0114560,FBtr0114559	1	3	3	80	X	528200	528221	GAAGTTGCTAATCATACAAGCC		59	528073	528161	GTCACGTCTATCCTAAAGAGC		59	NA	InUTR
Drosophila melanogaster	50	CG4293	FBgn0024983	FBtr0100476	2	1	4	177	X	423558	423677	GGTAAGCTGAAACATGACG		58	423341	423359	CGTGTAAACCAGGTAAACG		58	NA	InUTR
Drosophila melanogaster	50	ase	FBgn0000137	FBtr0070075	2	1	1	60	X	355896	355917	GGTTGCAATACATCAGAATACC		59	355937	355956	AATAAGTCAGTCGTCAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32816	FBgn0052816	FBtr0070101,FBtr0070102	3	2	2	74	X	227605	227623	TCAGGAAGCTATCCATCAC		58	211913	211932	AAATCATTTGGCTCCATCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CR41604	FBgn0085814	FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269	2	4	4	105	U	3449415	3449487	TTTCTGAAGCAAAGTCCCA		59	3449556	3449574	GCTTGATACTGATCTCCCG		59	NA	
Drosophila melanogaster	50	CG41542	FBgn0085679	FBtr0114128	3	1	1	61	U	9484845	9484865	CAGACGACTACGATATAATGG		57	9484888	9484906	CTGACGTAAACGTACTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41555	FBgn0085686	FBtr0114135	1	1	1	81	U	4865765	4865820	AAGAAACCTATCCGACGAG		58	4865865	4865883	GTTTCCTTAACAGCTGCTG		59	NA	
Drosophila melanogaster	50	CG41560	FBgn0085691	FBtr0114140	2	1	1	95	U	4060520	4060865	AGAAGAACGAATGGATCGG		59	4060443	4060461	TTAGTACCACTTGTCTGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CaMKII	FBgn0004624	FBtr0089217,FBtr0089218,FBtr0100148,FBtr0089219,FBtr0100146,FBtr0100147	2	6	6	80	4	1068498	1068517	CAGGATATCTGTCTCCTGAG		58	1068344	1068456	AAAGAATAACTCCACATGCC		58	NA	
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0089226,FBtr0089223,FBtr0089225,FBtr0089224	1	4	5	117	4	1036234	1037009	AGATTTAGAGTGGAGAACAGG		58	1036137	1036155	CGGAACATTATAGTGCTGC		58	NA	
Drosophila melanogaster	50	Pur-alpha	FBgn0022361	FBtr0089994,FBtr0089996	1	2	4	145	4	585281	586046	GATGGAGGGTTTAAAGGAG		57	586240	586258	ATAGTTATCGAAGTCCGGA		57	NA	
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451	2	4	8	95	4	159114	159132	AAGCGGCTAAAGACTAGTG		59	159190	160904	AGTACCAGTCTTGTCAAAGC		59	NA	
Drosophila melanogaster	50	CG1638	FBgn0039855	FBtr0113315	3	1	1	87	3R	27416804	27416822	TCAACTTTAGAGGCTTCGC		59	27416931	27416951	ACTTTCAGGTGCCTATTACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ptx1	FBgn0020912	FBtr0089389	2	1	3	80	3R	26742428	26749144	CTCGAGAAACTCAGAATTTGG		58	26749186	26749204	CAAACTATTTGCTACGGCG		59	NA	
Drosophila melanogaster	50	Ptx1	FBgn0020912	FBtr0089390,FBtr0089389,FBtr0089391	3	3	3	261	3R	26750043	26750061	AGTGTAAACGAAACCACGA		59	26750286	26754872	GATTCTTGAACCACACCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	tll	FBgn0003720	FBtr0085709	1	1	1	60	3R	26679671	26679689	CTGTTCTTCCGAAAGACCA		59	26679713	26679731	TGTACATGTCGGAGATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS7	FBgn0039757	FBtr0089423,FBtr0089425,FBtr0089422	2	3	4	90	3R	26032436	26033825	TTGAACACAAAGTCGACAC		58	26032364	26032382	ACATTCAGGTAGTTGTCGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG31427	FBgn0051427	FBtr0113407,FBtr0113406	1	2	2	112	3R	25065062	25065137	GGCAAAGATGATTTCCTTCC		59	25064969	25064987	TTGCGAATACCTTCCTTGG		59	NA	
Drosophila melanogaster	50	CG14509	FBgn0039647	FBtr0113303,FBtr0113304	1	2	2	146	3R	25004530	25006888	AGAGTTCGATTATGCCAGTC		59	25004403	25004421	TCATAGTGATTGGTGACGG		59	NA	
Drosophila melanogaster	50	CG11897	FBgn0039644	FBtr0085387,FBtr0085386	1	2	2	80	3R	24989869	24989950	CAACGTTGATCCAGAAACC		59	24989992	24990012	GCTATAGTCAATACAGTGCAG		58	NA	
Drosophila melanogaster	50	Pglym78	FBgn0014869	FBtr0100482,FBtr0100483,FBtr0085384	2	3	3	212	3R	24975027	24975045	TACGAGAACATCGTCAAGG		59	24975218	24975301	CTCAGAAAGGTTGTCTAAATGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	yemalpha	FBgn0005596	FBtr0085415	2	1	1	125	3R	24947498	24947516	AGTATGGCAACTCCTATGC		59	24947323	24947410	GTATGATTTCGTCGTAGGCT		59	NA	
Drosophila melanogaster	50	CG4951	FBgn0039563	FBtr0085265,FBtr0113298	2	2	2	90	3R	23778926	23778944	AGGATAAGGCTTCTTCCAG		58	23778796	23778872	GATCTGGAATTCTGCTGTG		58	NA	
Drosophila melanogaster	50	CG12426	FBgn0039552	FBtr0085227	3	1	1	60	3R	23697849	23697867	TGGATGTACACGTTCATCC		59	23697807	23697825	GGAATATGACGAGAACCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mtl	FBgn0039532	FBtr0085191,FBtr0085192,FBtr0085193	3	3	3	140	3R	23464015	23464106	ATCATTCTAGTTGGCACCA		58	23464210	23464228	CTCCATGTATTTCACAGCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG5938	FBgn0046247	FBtr0113355,FBtr0085159,FBtr0085160	3	3	5	129	3R	23101495	23102020	GCAACATGACGGTATTTGG		59	23102113	23102131	AGGGATTTCTTCAGCACTC		59	NA	InUTR
Drosophila melanogaster	50	CG14258	FBgn0039482	FBtr0085103	3	1	1	62	3R	22919274	22919292	TGCTGGTCAAGCATTAGTC		59	22919371	22919390	AAAGTCCTGGCTACATAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5455	FBgn0039430	FBtr0085016,FBtr0085017,FBtr0085015	1	3	3	82	3R	22293798	22293874	CGATGATAGCGACTATGCT		59	22293920	22293938	AAGTGGGAAAGCTGTACTC		59	NA	
Drosophila melanogaster	50	CG17370	FBgn0039381	FBtr0084909,FBtr0084910,FBtr0084911	2	3	3	88	3R	21711544	21711628	GGAACCAACGGATAAATTCG		59	21711678	21711697	AGAACATGATGAGCAGTGAG		59	NA	
Drosophila melanogaster	50	XNP	FBgn0039338	FBtr0084838,FBtr0084837	2	2	2	70	3R	21305130	21305148	CCAAGAACTACGAGTTCGA		59	21305022	21305040	GAAGTAATCCTTTCCGCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31439	FBgn0051439	FBtr0084845	3	1	1	60	3R	21223729	21223749	GATTACTACATCTGTCGTCAC		57	21223689	21223708	TGAAGTACCTATCACCACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CHKov1	FBgn0045761	FBtr0113351,FBtr0113352,FBtr0113349	3	3	5	291	3R	21149361	21149379	ATAACCTAGTGGAGCACCT		59	21149028	21149047	TAATTAAAGTCCAGGGCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ast	FBgn0015591	FBtr0084744	2	1	1	133	3R	20587146	20587164	CGAGATCGACTACAGAGTG		58	20586970	20586988	CAGCATTGACTTAACGTCG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	ash2	FBgn0000139	FBtr0114545,FBtr0084660	3	2	3	82	3R	20476243	20476261	CCAACTATGTGTTCGTCTG		58	20476307	20476385	CATCTGGGATATGGTAGCC		58	NA	
Drosophila melanogaster	50	CG13624	FBgn0039209	FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795	3	6	6	127	3R	20386540	20386625	TTAAGGTGTACAAGCACAG		57	20386431	20386449	AGTCATGTCATTGATGGTG		57	NA	
Drosophila melanogaster	50	CG6454	FBgn0039187	FBtr0084608	1	1	2	111	3R	20175949	20177784	GATCGAAGAATCCAGCTCC		59	20177859	20177877	TAAATTGGGACTGCTACCC		58	NA	
Drosophila melanogaster	50	Spase22-23	FBgn0039172	FBtr0084564	3	1	1	60	3R	20055348	20055367	CTGTGGGACAAGATTATCCT		58	20055307	20055326	TGTTCATGTTCTTGAAGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-glupro	FBgn0005674	FBtr0084512,FBtr0084511	3	2	2	62	3R	19779173	19779192	CCTCAATCAGTGGAATAACG		58	19779063	19779082	GTACGTAGGAAAGGAGTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10365	FBgn0039109	FBtr0084447,FBtr0084448,FBtr0084446,FBtr0084449	3	4	4	108	3R	19554819	19554837	ATTCGAGGATATGTTCGCC		59	19555685	19556380	AAGTGATTCCCTCTTTGTCC		59	NA	
Drosophila melanogaster	50	CG31145	FBgn0051145	FBtr0084480,FBtr0084479	1	2	2	83	3R	19434146	19434165	GTACGACCTTATGGACATGG		59	19433379	19434101	CCGTAGACCTTGAATGTCTC		59	NA	
Drosophila melanogaster	50	orb	FBgn0004882	FBtr0084385,FBtr0084384,FBtr0100227	2	3	5	161	3R	19094013	19094120	TTCACCTTTAGTCAGCGAC		59	19093870	19093888	AAACTAAGTCCCAATCCGC		59	NA	
Drosophila melanogaster	50	CG33093	FBgn0053093	FBtr0084287	2	1	1	98	3R	18356726	18356801	CACGCTTTGCAACATAGAG		59	18356646	18356665	TGCAGAGTTATCAGGATGAC		59	NA	
Drosophila melanogaster	50	sar1	FBgn0038947	FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208	2	5	5	60	3R	18184317	18184335	TTCACTACATTCGACTTGG		57	18185255	18185273	GGAAGTAGTCCTTCCAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31163	FBgn0051163	FBtr0084197,FBtr0110836	3	2	2	92	3R	18107604	18107622	ATTTCAACGTGAACACGAG		58	18110651	18111206	ATATACGTATCGTCCATGCG		59	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	3	22	22	87	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202451	17202547	TTGTTCAGGAATACGATAGC		57	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084063	1	1	22	112	3R	17179445	17200789	GGCTCAAGAATTCGATTACG		59	17179352	17179370	AGAACTTCATCCCATCGAG		58	NA	
Drosophila melanogaster	50	att-ORFA	FBgn0067783	FBtr0089481,FBtr0089482,FBtr0089480	2	3	3	60	3R	16378772	16378861	TCAAGATCTATCGTGAGGAG		58	16378731	16378749	CAGTTCATGCTAAGTCCCT		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Cha	FBgn0000303	FBtr0089368	2	1	2	272	3R	14555603	14555624	CGGAAAGACCTTTATCAAATCG		59	14555950	14556055	AGATGATCCTTCTTTCGCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18600	FBgn0038601	FBtr0083594	2	1	1	90	3R	14126693	14126711	AAAGTTTGATCCCGAGCTC		59	14126564	14126642	GATTTAATGGGTAGAGTCTGCA		59	NA	
Drosophila melanogaster	50	CG18599	FBgn0038592	FBtr0083571	1	1	1	160	3R	14096187	14096322	ACTCAAGTCGGATTCTCAC		59	14096446	14096464	CCGTTAACTTTAGGGTGTG		58	NA	
Drosophila melanogaster	50	CG14313	FBgn0038579	FBtr0083615	3	1	1	84	3R	14017128	14017146	ACACCTTTAGCATCATGCA		59	14017062	14017080	TAGCTGACGTTGTTCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17802	FBgn0038549	FBtr0083526	3	1	1	118	3R	13629369	13629586	TAACTTCCACTGTGAGGTC		58	13629269	13629288	CAATTTCGGACTTAGCACTC		58	NA	
Drosophila melanogaster	50	CG14330	FBgn0038512	FBtr0083443	1	1	1	211	3R	13282270	13282288	CTCTTCTACGAGATACCGC		59	13282077	13282095	ACTTTGCGGATAGAATAGC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG5863	FBgn0038507	FBtr0083439	1	1	1	60	3R	13237875	13237893	ATCGTGTTCATCATTGGAG		57	13237914	13237935	CACTCATTACATAATCTCTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17475	FBgn0038481	FBtr0083417	2	1	1	60	3R	12955938	12955957	TAATCAATGGCGAAGATGTG		58	12955897	12955916	ATTCCCTGCAACGATATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fas1	FBgn0000634	FBtr0112803	1	1	4	138	3R	12455313	12457342	CAGTTAGGTTCTACAGCCTG		59	12457443	12457461	ATGTGATAGAGCACATGGG		59	NA	
Drosophila melanogaster	50	CG14903	FBgn0038446	FBtr0083303	1	1	1	60	3R	12399042	12399060	CAAGTTGTGGATCGAACAG		58	12399000	12399018	AACATAAGGTTTCAAGGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8927	FBgn0038405	FBtr0100110,FBtr0083254	3	2	2	149	3R	12010827	12010845	AATACCATACTTCCAGCGG		59	12010958	12010976	CTGGAACTGTGATTGTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4525	FBgn0038358	FBtr0083170	3	1	1	81	3R	11602483	11602563	AATTGGGATCGAAAGAGCA		59	11602607	11602626	ATAGTGTCACACTCTGTTGC		59	NA	
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	1	7	12	158	3R	11122418	11125004	GAAATACGATGAGGTTGCC		58	11126525	11126543	TTCTCCTCAGAGACTTCCA		59	NA	
Drosophila melanogaster	50	Orc2	FBgn0015270	FBtr0082866	2	1	1	95	3R	9791245	9791263	CAAGAAGTCCATGGATCAG		57	9791390	9791408	AAATCCTCATCTGAGTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	3	8	8	284	3R	9504401	9504476	ACACGACGTAAATCAGGAG		59	9504723	9504742	TTTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CheA87a	FBgn0038142	FBtr0082749	3	1	1	60	3R	9195706	9195724	ATAGCGATGGAGACTACGA		59	9195747	9195766	TTCATAAAGTCGCAAAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8790	FBgn0027610	FBtr0082747,FBtr0082748	1	2	2	158	3R	9193736	9193754	AGAAGTACGTCAATACGGA		57	9193875	9193984	CATTATTGTAGTTGCGTCGT		58	NA	
Drosophila melanogaster	50	CG8449	FBgn0038129	FBtr0082778	3	1	1	106	3R	9096141	9096223	CGTGATAAACTGCTTCTTAGTG		59	9096056	9096074	AGCATGAATAGGGCATGTC		59	NA	
Drosophila melanogaster	50	CG34402	FBgn0085431	FBtr0112656,FBtr0112654	1	2	3	81	3R	8228195	8228269	CATTGGAAGTTGTGACCAC		58	8228314	8228332	TCTGCTGAACTTTCGATCC		59	NA	
Drosophila melanogaster	50	CG17639	FBgn0038029	FBtr0114565,FBtr0082576	2	2	2	100	3R	8210529	8210937	CTCACGGACTACTATTTCCC		59	8211000	8211018	AAGATTGTGTTTAGCCAGC		58	NA	
Drosophila melanogaster	50	MBD-R2	FBgn0038016	FBtr0082612	2	1	2	80	3R	8180558	8180650	TTGGATATAGCATCCCTTGG		58	8180497	8180516	AATAGGCTGGTCATTTACCC		59	NA	
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	1	15	15	89	3R	7811197	7811279	CCCAAGAATAACATGCTTAAGC		59	7811129	7811148	CAGCTGTGTAAGATTAGCCT		59	NA	
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	3	15	15	123	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811939	7812029	GGTTCTTCAGGATGTTGGA		59	NA	
Drosophila melanogaster	50	CG14714	FBgn0037929	FBtr0082422,FBtr0113222	3	2	3	108	3R	7498790	7498808	CAGCCACGAGATTAATGGA		59	7498982	7499001	TATAATGGTACCGGTTCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6782	FBgn0037912	FBtr0100465,FBtr0100462,FBtr0100461,FBtr0100464	3	4	4	236	3R	7386647	7386665	GTTAAGAAGACGGTGGGAG		59	7386370	7386388	CTTCACCTTGATGGTCTCC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG17230	FBgn0046225	FBtr0082392,FBtr0082393	2	2	2	66	3R	7291079	7291097	TTCAGTTTCCGAGACTTCC		59	7291127	7291145	CAGATTGGAGAACGAATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ugt86Dc	FBgn0040257	FBtr0082337	2	1	1	60	3R	6981635	6981656	AGTTATTTGGAAGTACGAGGAG		59	6981674	6981695	CGATATGAGAACATTATCCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cap-H2	FBgn0037831	FBtr0082273,FBtr0082270,FBtr0082272	2	3	4	87	3R	6589604	6589625	CTAGATGAACTGTTGCTAATCG		58	6589671	6589889	GGCGTTGATCTTCTAAATCTG		59	NA	
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082186,FBtr0082187	1	2	8	86	3R	5955360	5960550	AAGCCAGCAAGTAATGGAG		59	5955292	5955310	TATGATGTCTGCATCCGTG		59	NA	
Drosophila melanogaster	50	Fancl	FBgn0037781	FBtr0082203	3	1	1	60	3R	5878103	5878122	CCTTGTACAAGTCAAACGAG		58	5878062	5878080	AAACGAATCATGGAACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16817	FBgn0037728	FBtr0082082	3	1	1	64	3R	5504316	5504335	GCAATGACTTGATCTACGTC		58	5504362	5504451	TTCCGTAACTTTGTGTTCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	mura	FBgn0037705	FBtr0082116,FBtr0082117,FBtr0082118	2	3	3	83	3R	5367294	5367414	GGAACTTGAATAACCACTTTGG		59	5367232	5367250	AGTTGTACGAAGAACCCTC		58	NA	
Drosophila melanogaster	50	CG8132	FBgn0037687	FBtr0082029	1	1	1	63	3R	5227514	5227532	GTACTTTCGGGAGTACTCC		58	5227559	5227577	CAAATTGGAGAGCTGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16736	FBgn0037668	FBtr0081985	3	1	1	60	3R	5082731	5082752	CATACAGTGATATCATGGTTCC		58	5082692	5082712	TAGTTATGAGATCGCTAAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0112822	3	1	8	141	3R	4659875	4659893	ACTACCATGACATGAATGC		57	4659452	4659706	TGATAGCGTCTGTATTTGC		57	NA	
Drosophila melanogaster	50	CG31259	FBgn0051259	FBtr0081871	2	1	1	207	3R	4351094	4351112	AGGACTAAAGCCATTCCTG		58	4351356	4351374	ATTGTCGAAACCAAACGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gfr	FBgn0037567	FBtr0081863	3	1	1	92	3R	4128724	4128795	GAAATCAAGGTCACATCCG		58	4128650	4128669	GTCATGGTAGTACTGAGTGG		59	NA	
Drosophila melanogaster	50	CG9636	FBgn0037556	FBtr0081805,FBtr0081804	3	2	3	105	3R	4068193	4068212	GGGACAATAAGATCGTATCG		57	4068005	4068126	CTACTGCTAGGTTGAATCTG		57	NA	
Drosophila melanogaster	50	CG2678	FBgn0014931	FBtr0081757	2	1	1	186	3R	3740984	3741640	CTATGCTAAAGCCGAAACC		58	3741790	3741808	AACAGATCTCCCATGTGAC		58	NA	
Drosophila melanogaster	50	alphaTub84D	FBgn0003885	FBtr0081539,FBtr0081538	3	2	2	61	3R	3357678	3357697	AAATAGTGTCCTCGATCACC		59	3357721	3357739	GGTGAGGTCCACATTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alphaTub84D	FBgn0003885	FBtr0081539,FBtr0081538	1	2	2	60	3R	3357679	3357697	AATAGTGTCCTCGATCACC		58	3357721	3357739	GGTGAGGTCCACATTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34023	FBgn0054023	FBtr0100078	1	1	1	62	3R	3246248	3246266	CTATTCCCGAGTGGTATGC		59	3246292	3246310	TAATGCCATTTGAGGTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14607	FBgn0037488	FBtr0081575	2	1	1	60	3R	3068832	3068850	TACAACGATTCCGATGGAG		59	3068873	3068892	TAGGATAATCCACTCCAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bcd	FBgn0000166	FBtr0081666,FBtr0081664,FBtr0081667,FBtr0081668,FBtr0081665	1	5	5	75	3R	2582455	2582473	GGATACGATAATGCAAGCG		58	2582398	2582416	CTAATTGAAGCAGTAGGCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15180	FBgn0037458	FBtr0081702	1	1	1	215	3R	2433920	2434065	TTATATGAGGATGCTGGCC		58	2433723	2433741	AAAGCAACCTTGACAATGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	gpp	FBgn0014963	FBtr0081723,FBtr0081724	2	2	2	104	3R	2264478	2264564	ACAGACAGAAACCTCAGTG		59	2264631	2264650	CAGATAATACGAAACGGGCT		59	NA	
Drosophila melanogaster	50	gpp	FBgn0014963	FBtr0081723,FBtr0081724	3	2	2	104	3R	2264478	2264564	ACAGACAGAAACCTCAGTG		59	2264632	2264650	CAGATAATACGAAACGGGC		58	NA	
Drosophila melanogaster	50	Hr83	FBgn0037436	FBtr0081713	1	1	1	64	3R	2175560	2175579	TTATGGAGTCCCTAATCCTG		57	2176039	2176057	CAGGATAACGGCATACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31560	FBgn0051560	FBtr0078609	1	1	1	60	3R	2135951	2135969	CGGAACAGGATATGGAGAC		59	2135992	2136011	CTGGCTAGTGAAATAGTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078675,FBtr0078672	2	2	5	165	3R	1586675	1587378	AATTCGGACATCAAATCGTG		58	1586473	1586491	ATGACATCTACCTTGCAGC		59	NA	
Drosophila melanogaster	50	CG31548	FBgn0051548	FBtr0078736	2	1	1	81	3R	1462155	1462174	CTACCACCTTACTATGCTGG		59	1462093	1462111	AATCCCATTGACACTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1427	FBgn0037347	FBtr0078702	2	1	2	80	3R	1428643	1428718	GAGTTTCTAGGCAAATTTCGG		59	1428760	1428778	GTTATTCCAATTCCTGCCG		58	NA	
Drosophila melanogaster	50	exba	FBgn0037346	FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745	3	7	7	85	3R	1423978	1423999	GGTTCTATTATTCGTAAAGGGC		58	1423648	1423932	CAGAACCGTTGACTAACCA		59	NA	
Drosophila melanogaster	50	exba	FBgn0037346	FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745	2	7	7	84	3R	1423978	1423999	GGTTCTATTATTCGTAAAGGGC		58	1423649	1423933	AGAACCGTTGACTAACCAG		59	NA	
Drosophila melanogaster	50	CRMP	FBgn0023023	FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686	1	4	4	80	3R	1404085	1404170	CATAAGTGAGGAGCTCGAC		59	1404214	1404232	AATCCAGAAGACTTTCCGC		59	NA	
Drosophila melanogaster	50	Snr1	FBgn0011715	FBtr0078682	2	1	1	93	3R	1296895	1296913	CTGTACAAGAAGTACCCGG		59	1296970	1296988	CTAAGATGTGGGAGCTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1116	FBgn0037297	FBtr0078775,FBtr0078774,FBtr0078776	2	3	3	210	3R	1045991	1046009	CAAGATCACCATTGCTACG		58	1046182	1046266	GGTTACGTTCTTAAGGTGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	cno	FBgn0000340	FBtr0078832,FBtr0078833	3	2	2	88	3R	1007198	1007281	CATCAGTTTAATGCTCGCAG		59	1007129	1007147	TTGCTGTTCTTGTGTAGCT		59	NA	
Drosophila melanogaster	50	tacc	FBgn0026620	FBtr0089955,FBtr0089953,FBtr0089952,FBtr0089954	3	4	7	83	3R	570242	570260	CAAAGTTTGGAGGTCTTCC		58	569896	570197	TCAGTTGAGTATCCATATCGG		58	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0100500	1	1	15	196	3R	117972	117990	TTACCGAACTTCTGTTCCA		58	121000	121299	TGATGTTGTACTTATCGCG		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG33169	FBgn0053169	FBtr0078550	1	1	2	98	3L	22858013	22858092	GCTCAAGTTTCTGATACGAG		58	22858153	22858171	AACACATTTCACCACTGTG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Csp	FBgn0004179	FBtr0078495,FBtr0078493	2	2	3	186	3L	22263010	22264665	CACATCTGAATGAGGACGT		59	22264815	22264833	TTTAGCGACGTATTCTCGT		58	NA	
Drosophila melanogaster	50	CG32440	FBgn0052440	FBtr0078345	1	1	1	63	3L	21354075	21354093	ATATACCGGACAAGTCCTG		58	21354120	21354138	TATTTCGAGGAACTGTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10587	FBgn0037039	FBtr0078333	3	1	1	60	3L	20955220	20955241	CATATTACGGCTAAAGAAACCC		59	20955181	20955200	TTTGCACAATATCAGCTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0100238,FBtr0100237,FBtr0078257	1	3	10	187	3L	20809758	20809776	ACATGTCCTACATGATGGC		59	20809927	20825957	TTTGACTTGTTCCCTCTCG		59	NA	InUTR
Drosophila melanogaster	50	CG32425	FBgn0052425	FBtr0078205,FBtr0078202,FBtr0078203	1	3	5	164	3L	20505333	20505351	ATCATCAATGATGAGCGCT		59	20505479	20505632	GATCACTGGTAGCTTTCCC		59	NA	
Drosophila melanogaster	50	in	FBgn0001259	FBtr0078183	1	1	1	60	3L	20361522	20361541	GCTAATCGGATACATACGCT		59	20361563	20361582	CTCCTGATTAAAGCTCTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7668	FBgn0036929	FBtr0074904,FBtr0074905	2	2	2	89	3L	19997456	19997528	ATGAACTGTAACTTGAACGG		58	19997580	19997598	ACCAACATTCCAATTACCC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG32206	FBgn0052206	FBtr0089795,FBtr0089796	1	2	2	80	3L	19357771	19357789	TCCGACTCATTTGACTTCG		59	19348668	19357728	TAGCACATCATCTGGATTCG		59	NA	
Drosophila melanogaster	50	Max	FBgn0017578	FBtr0075018	2	1	1	60	3L	19256111	19256195	TAGCTAAGCAGATACAAGCA		58	19256070	19256089	CTGAGAAATTCGCTGAACTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Indy	FBgn0036816	FBtr0075083,FBtr0075082,FBtr0075081	3	3	3	89	3L	18824243	18824265	CTGTGGAGTACTGTAATCTACAC		59	18824112	18824195	TGAGGCCAAAGTGTAATCTG		59	NA	
Drosophila melanogaster	50	CG11905	FBgn0036678	FBtr0075304,FBtr0075301,FBtr0113173	3	3	10	209	3L	16926458	16928310	AAATGCGCTTTCTTGTTCTC		59	16923957	16923975	GTTGATAGGCTCCATAGGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Lmpt	FBgn0036672	FBtr0089452,FBtr0089457,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459	1	6	8	120	3L	16905417	16906329	CATCGACTCCAAGGATCTG		59	16906412	16906431	GTAGATCTTATCCGCCTTGG		59	NA	
Drosophila melanogaster	50	CG13024	FBgn0036665	FBtr0075340	2	1	1	96	3L	16803226	16803245	GATAGTCAGCATGAGTACCA		58	16803090	16803108	TAAATCCTAGCTCTTGGGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG9706	FBgn0036662	FBtr0075327,FBtr0075326	1	2	2	60	3L	16777547	16777566	TGCCTGCTTATTACTACGTC		59	16777586	16777607	TACAGGAATACTTGGTAGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nxf2	FBgn0036640	FBtr0089479,FBtr0089478	1	2	2	109	3L	16571919	16571937	ATGTGGAGATCGATTTGGA		58	16571769	16571846	ATCGGGTATCATAAAGGCA		58	NA	
Drosophila melanogaster	50	CG32158	FBgn0052158	FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404	3	5	7	126	3L	16485860	16485879	ATTTGACTGGGATGTGAGTG		59	16485591	16485772	AATGATTGTCGTATCCCTCC		59	NA	
Drosophila melanogaster	50	Pdh	FBgn0011693	FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536	3	4	4	131	3L	16346821	16346839	ATCATTCCCGTTTACGGAG		59	16346644	16346662	CATGTCCGTCATTGTAGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12713	FBgn0036536	FBtr0075506	2	1	1	115	3L	15826403	15826421	CAAGTCGAACATCCAACAG		58	15826565	15826583	CAATGTTGTTATCCGGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34452	FBgn0085481	FBtr0112758	1	1	1	80	3L	15680219	15680238	GCTAAAGACGTATAGTCCCA		58	15680041	15680177	TCTAGCATAAAGACCAGACC		58	NA	
Drosophila melanogaster	50	CG13457	FBgn0036482	FBtr0075654,FBtr0075653	2	2	2	77	3L	15121464	15121482	ATTATACGGGACCTAGCTC		57	15121300	15121318	CATCATCGTAGGTGGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6945	FBgn0036476	FBtr0075657	1	1	1	169	3L	15087348	15087366	CAACAAAGGTCTTCGTTCG		59	15086274	15086292	GATTGTGCATAGAGTTGCT		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG18649	FBgn0036469	FBtr0075663	1	1	1	60	3L	15047046	15047065	GATGAGAAAGACGATGAGGA		58	15047005	15047023	CAGGCTCATCTAAGTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13461	FBgn0036468	FBtr0075664	2	1	1	60	3L	15045319	15045339	GTCAGATAATGAATCAAGCGG		59	15045279	15045298	GGTATTATCATCAGACCCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	endos	FBgn0061515	FBtr0075783,FBtr0075782	2	2	2	229	3L	14023965	14023984	CTCAAGTCCAAGTATCCCAG		59	14023369	14023387	TTACAGGGTTGGATGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9007	FBgn0036398	FBtr0075768	1	1	1	60	3L	14003675	14003802	TTTGGTCAGCAAATTGCTC		59	14003825	14003844	TACTGCTTATAGCAGAGTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17300	FBgn0036345	FBtr0075892	3	1	1	74	3L	13079853	13079871	TGTAAAGTGGGCTGATAGC		59	13079671	13079690	ACCTTGATCTTAGTTTCACG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11006	FBgn0027534	FBtr0075927,FBtr0075929,FBtr0114506,FBtr0075928	1	4	4	84	3L	12803756	12803840	TGATGAAGATCGATGAGAAGG		59	12803886	12803904	AATGATAGAACGCCTGTGG		59	NA	
Drosophila melanogaster	50	CG10984	FBgn0036305	FBtr0075921	1	1	3	91	3L	12743948	12744418	TTTACATCATTCATCCCGCA		59	12744472	12744490	CTTGCTTCTCATTCAGGCT		59	NA	
Drosophila melanogaster	50	CG10638	FBgn0036290	FBtr0089321	2	1	2	96	3L	12492358	12492432	TTGGTCACTAAGCTTTGGA		58	12492280	12492299	GATCGATATAGTCCAAGCCA		58	NA	
Drosophila melanogaster	50	mtTFB1	FBgn0036197	FBtr0076112,FBtr0114551,FBtr0114552	3	3	3	61	3L	11703301	11703319	CCTAAGACTCAATTGCCGT		59	11703344	11703362	CGCATGCTAAAGATGTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14135	FBgn0036193	FBtr0076111	1	1	1	180	3L	11685611	11685629	GATCAGAGGAAGAACTCGC		59	11686325	11686346	CTCGTTCTTTGATTCTTCAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6707	FBgn0036058	FBtr0076356,FBtr0076358,FBtr0076357	2	3	3	83	3L	9889096	9889114	CTGGTGTTCCTCATCACAG		59	9888950	9888968	GTAGAGGAAGTACATGCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8108	FBgn0027567	FBtr0076339,FBtr0076340	1	2	2	102	3L	9858406	9858424	CACTACGACAACAGGAGTC		59	9858490	9859423	GAGATGAGTCATAGCTGCG		59	NA	
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385	2	8	8	112	3L	9825956	9826035	GAGTTAACCGGGACTACAC		59	9826111	9826129	TCTTTCCCAAACTTAGCCG		59	NA	InUTR
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323	1	4	11	113	3L	9774996	9775719	ACCTGGGTAATTTGTCTGG		59	9775795	9775814	ACATATCGTCCTTCATGTCG		59	NA	
Drosophila melanogaster	50	CG18178	FBgn0036035	FBtr0076412	3	1	1	60	3L	9711604	9711623	TTAAGGATATCAAGGCTTCG		57	9711563	9711581	AGTGATACGAATAAGCCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16711	FBgn0036032	FBtr0076397,FBtr0076396	1	2	2	60	3L	9701922	9701940	TCCAGAACAATCAGATGGC		59	9701963	9701982	AGATATGAATTCAGCAGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3911	FBgn0035992	FBtr0089879	1	1	1	220	3L	9432383	9432401	AGTTCTCCCTGGTATTCGA		59	9432083	9432101	TATGACCTCCTCTAGACGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hsp67Bb	FBgn0001228	FBtr0100653,FBtr0100655	3	2	2	88	3L	9366346	9366364	CAATCATATTCACCTGCCG		58	9366416	9366502	GTAGATCACCACATTGCTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG4477	FBgn0035971	FBtr0076430	1	1	1	99	3L	9243956	9244044	TATGTATAAAGGCGGTCCG		58	9244107	9244125	AACGGATGGAACTCTTAGC		59	NA	
Drosophila melanogaster	50	Gug	FBgn0010825	FBtr0076619,FBtr0076617,FBtr0076618	2	3	4	267	3L	8461489	8461507	ATTTGATCTTCAAGCCGGT		59	8461798	8461978	TGTTCAACAGGACTGAAGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Idh	FBgn0001248	FBtr0076671,FBtr0114548,FBtr0114547,FBtr0076668,FBtr0076673,FBtr0076669,FBtr0114549,FBtr0076667,FBtr0076670	2	9	9	60	3L	8350910	8350931	CATTAAGAGCCAACTGATTCTG		59	8350871	8350889	ACCAAGATCGTAGGTATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr66Cb	FBgn0035875	FBtr0076601	2	1	1	118	3L	8330819	8330837	ATCAAATCGAACGCATCTC		58	8330919	8331020	GGGAGGAGCATAGTAATCC		58	NA	
Drosophila melanogaster	50	mRpL36	FBgn0042112	FBtr0076735	2	1	1	82	3L	8117980	8117998	AACTGGAATCTGTCAGACG		59	8117916	8117934	GTCCCTTGACCTTGAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780	3	8	8	128	3L	7811268	7811288	CCAGATGACAAATACAAGGAG		58	7810754	7811178	GTCGGCATATTGTGTTACC		58	NA	
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112702,FBtr0112698	2	6	10	80	3L	7693414	7693497	ACTGTACAAGGAAGTCATCC		59	7693353	7693373	TTAGCTTCGAATGGTTCTACC		59	NA	
Drosophila melanogaster	50	CG7716	FBgn0035800	FBtr0076824	3	1	1	60	3L	7582204	7582222	TTTGACCTTAACGGTGGAC		59	7582162	7582183	GCTCTCCAATTTGTTTAGTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32376	FBgn0052376	FBtr0076827	1	1	1	60	3L	7535527	7535545	TTCGGATCAGAAAGTGAGG		58	7535485	7535505	TGTCCTTATAGTATCCTGACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7548	FBgn0035792	FBtr0076830	1	1	1	60	3L	7498806	7498824	TCTGTTTACCAACAGAACG		57	7498764	7498782	CCGGAGAATAGTGGATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8596	FBgn0035767	FBtr0076881	3	1	1	83	3L	7336701	7336776	CTCAACAAGCTAGATCCCG		59	7336636	7336655	ACTGAAGATCATTTGTCCCA		58	NA	
Drosophila melanogaster	50	Prat2	FBgn0041194	FBtr0076945	1	1	2	90	3L	6906617	6907521	CAACACAACTGGACATAGC		58	6906545	6906563	AAACTGGTCACTATTCCCG		59	NA	
Drosophila melanogaster	50	D19A	FBgn0022935	FBtr0077016	2	1	1	60	3L	6179882	6179900	TTCGAGTGCAAGATTTGTG		58	6179840	6179858	TGATGTGTTTCTTGAGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13708	FBgn0035577	FBtr0073358	3	1	1	60	3L	4829163	4829183	GTATGCTTCTTGATATCGTCC		58	4829123	4829141	AGGTAGACATCTAGCTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hexo1	FBgn0041630	FBtr0073235,FBtr0073237,FBtr0073236	3	3	4	98	3L	4289086	4289104	GTTGACGAAATGAAGTCGA		58	4289166	4289258	GTAAACCAAGTCATCCGAG		57	NA	InUTR
Drosophila melanogaster	50	CG10359	FBgn0035452	FBtr0073136	2	1	2	155	3L	3613875	3614080	GCTTAAAGATATCTCGCGC		58	3614199	3614217	ACAGATCTGACACTGAGAG		57	NA	
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133	2	5	11	192	3L	3578467	3593333	TTGCAGATATGGAGACTGG		58	3593487	3593507	CTGTTTGTTCAGAAAGACCTC		59	NA	
Drosophila melanogaster	50	PHGPx	FBgn0035438	FBtr0073068,FBtr0073066,FBtr0073067	3	3	4	214	3L	3328064	3328082	CTGGTGATCCTCAACTTCC		59	3328326	3328345	GTGAAGTTCCACTTGATTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32284	FBgn0052284	FBtr0073037	2	1	1	84	3L	3186886	3186968	CCAACTTGTAGAACCTACGT		59	3187015	3187033	AGTACTGGTTCACTTTGCA		59	NA	
Drosophila melanogaster	50	stet	FBgn0020248	FBtr0072713,FBtr0072712	1	2	2	201	3L	1476517	1476594	ATTCTGGTCTTCGTTTCCT		58	1476334	1476352	TCTGCTCAAAGCTCTTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	FucTD	FBgn0035217	FBtr0072693	3	1	1	60	3L	1417519	1417537	CATGGCTATGGACAAACTC		58	1417560	1417579	CAGATTGGTTAGGTTTCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33446	FBgn0053446	FBtr0086438	1	1	1	62	2R	15619368	15619386	AATACATCGGTTCTCGTCC		59	15619324	15619342	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9380	FBgn0035094	FBtr0110899	3	1	2	103	2R	21074424	21074442	TTAGATCGTGAGATGCAGC		59	21072546	21074358	TCCATATTTCGCACATACGT		59	NA	
Drosophila melanogaster	50	Nplp1	FBgn0035092	FBtr0072443	2	1	2	107	2R	20925012	20925030	TCGACTGGAACGATTATCG		59	20926621	20926639	GAAACACTGCTTACAAACG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG30424	FBgn0050424	FBtr0113375,FBtr0113377,FBtr0113376	1	3	3	97	2R	20853307	20853382	ACTTCGGGAATTCAGTCAC		59	20853228	20853246	TTGAAGTGGTCTTCAGTCC		59	NA	
Drosophila melanogaster	50	CG2790	FBgn0027599	FBtr0072409	2	1	1	60	2R	20834300	20834319	CTTTGACTCCAAGAACAAGC		59	20834259	20834278	TATGTAGACACCATGGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS17	FBgn0034986	FBtr0072277	3	1	1	96	2R	20061863	20061881	CGAGGACTCCTACTAATGG		58	20061785	20061804	TATTCAGGTTCTTGTCCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SIP1	FBgn0061198	FBtr0072194	3	1	1	105	2R	19916147	19916165	GAGAATCACCGACTTTCTG		57	19915571	19915589	CTCCAGATAGTCTATGCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pde8	FBgn0034886	FBtr0072074,FBtr0072077,FBtr0072075,FBtr0072076	3	4	5	101	2R	19562501	19562640	TTAATAGATGCGTAGCGGA		58	19562705	19562723	GAGTGGACATGACATTGTG		58	NA	
Drosophila melanogaster	50	Gr59a	FBgn0045483	FBtr0071964	1	1	1	60	2R	18968605	18968625	CACATTCTTCTACTTCACCTC		58	18968644	18968665	CTGGTTTACAAAGTCATATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	twi	FBgn0003900	FBtr0100130,FBtr0071953	3	2	2	60	2R	18934043	18934061	TGGACATAAGCTACAAGCC		59	18934084	18934103	TTGATCACATTGTTCTGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30196	FBgn0050196	FBtr0071927	2	1	1	60	2R	18542537	18542555	GTCAATCACTACTGCAGCT		59	18542495	18542514	ACCAACTCAGAGTGATATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4329	FBgn0034745	FBtr0071940	3	1	2	61	2R	18499375	18499393	GGAAACCGATCATCATGAC		58	18499283	18499302	GGTCTCATAGTTCCAAATCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3045	FBgn0034703	FBtr0071787	3	1	1	81	2R	18061065	18061143	CATACAAATTCAGGCTACGAC		59	18061004	18061023	CCATTATGCAACGGATTTGG		59	NA	
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089710,FBtr0089703	2	2	9	130	2R	17399440	17399460	CCGTCTAGATCCTACAAACTC		59	17399676	17399909	GGAAGTACTTGACGTAGCC		59	NA	
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708	2	9	9	93	2R	17398737	17398915	TTTGCCAGAGGATTACGTC		59	17398972	17398990	ACCAATCACCGACTTTAGG		59	NA	
Drosophila melanogaster	50	Pros29	FBgn0003150	FBtr0071522	3	1	1	259	2R	16882794	16882812	AAGATCTATCGCCTGAACG		59	16883172	16883190	GACTGGTACAGTTGGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13427	FBgn0034514	FBtr0086268	1	1	1	106	2R	16426563	16426581	CTGAGCAAATTGTTCCAGC		59	16426475	16426493	TTGTAGTACGGATAGGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0100392	1	6	15	104	2R	15361451	15361469	ACGTTATTCCTGCAGAGAC		59	15365203	15366258	CTCTGGTTTGACCAGAGTG		59	NA	
Drosophila melanogaster	50	Elongin-C	FBgn0023211	FBtr0086540	2	1	2	200	2R	15333532	15333550	ACGAATTTGTCGTCAAACG		59	15332802	15332820	GGAATTCGGGTATTTCGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CalpA	FBgn0012051	FBtr0086529,FBtr0086530,FBtr0112869	2	3	3	84	2R	15313711	15314143	GAATATGAGAGTTCTGGGAGAG		59	15314186	15314206	GCAGCTGTTCAATATTGTCTC		59	NA	
Drosophila melanogaster	50	hts	FBgn0004873	FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086548	3	5	6	90	2R	15295689	15295707	TTCGATAACGTCACAGACG		59	15295549	15295636	CTGTGTCGGTATATTCACCA		59	NA	
Drosophila melanogaster	50	cer	FBgn0034443	FBtr0086551	2	1	1	79	2R	15284038	15284056	CAAGAACTACGAGGCAGAG		59	15283977	15283995	GATTGTGTTCCTCAATCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10737	FBgn0034420	FBtr0086588,FBtr0086585,FBtr0086586	3	3	5	81	2R	15064177	15064195	GATTAGTCACAAGCAGTGC		58	15064239	15064455	AAATGACGTTAGTTCCATGG		58	NA	
Drosophila melanogaster	50	CG15118	FBgn0034418	FBtr0086590,FBtr0086592,FBtr0086589,FBtr0113096,FBtr0086591	1	5	5	60	2R	15023833	15023851	GCTCTTACATCTTCAAGGG		57	15023724	15023742	GTATCGTGATCGATCTCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18190	FBgn0034403	FBtr0086626	3	1	1	60	2R	14739539	14739559	CGATAGATGGTGAAATCAACG		59	14739499	14739518	CCTTCATCACCATTATCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15096	FBgn0034394	FBtr0086633	3	1	2	166	2R	14697680	14698841	GCTTTGAGGATGAAGACTC		57	14697466	14697550	CGACCAATTATACTCGGGA		58	NA	
Drosophila melanogaster	50	CG15093	FBgn0034390	FBtr0086638	3	1	3	260	2R	14664055	14664073	ACTTTGTGATCACCATGCT		59	14663589	14663607	CACAGGGTTGTAGATCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33998	FBgn0053998	FBtr0100053	3	1	1	60	2R	14626070	14626089	GCCGTAGTCACAGTATTACC		59	14626109	14626130	TCCCTGTGTAAATGCATATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14505	FBgn0034327	FBtr0110803	1	1	1	60	2R	14191197	14191216	ATTGTGACACCGTCTATGAG		59	14191156	14191174	CCATACAGCGGACTTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10911	FBgn0034295	FBtr0086808	2	1	1	60	2R	13940445	13940464	AATCGTCTACTGATTCGTCC		59	13940404	13940423	GAATCAGTTGAGGAATCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GstS1	FBgn0010226	FBtr0087005,FBtr0100258,FBtr0087006	1	3	3	120	2R	12981866	12981884	ATTCTACCTGGAGAAGCTC		58	12981677	12981697	GACCATGTAGTTCATGTAGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Sply	FBgn0010591	FBtr0087008,FBtr0087007	3	2	2	194	2R	12976444	12976522	AGTTTCCATCTGGTATCCAC		59	12976269	12976287	GAGTCACTTCTCCGATCAC		59	NA	
Drosophila melanogaster	50	CG30463	FBgn0050463	FBtr0113379,FBtr0113381,FBtr0087113	2	3	5	163	2R	12566520	12566538	ACAACATTTATCCCGAGCT		58	12562745	12565927	CATCCAGTACTGATTTCCTCC		59	NA	
Drosophila melanogaster	50	CG34458	FBgn0085487	FBtr0112764	1	1	1	60	2R	12559861	12559879	CCCAGTTCATCATACATCC		57	12559902	12559921	ATCAGCGACATATCAAAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8311	FBgn0034141	FBtr0087121	3	1	1	67	2R	12475756	12475846	AACATGATCATGGTGAATGC		58	12475708	12475726	GTTGGAAAGAGGACGAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	mrj	FBgn0034091	FBtr0087193,FBtr0087196,FBtr0087194,FBtr0087195	3	4	5	150	2R	12093318	12093419	GAAGTGAAGAAGGCATATCGA		59	12092510	12092528	ACTCATCGTATATGCGACG		59	NA	
Drosophila melanogaster	50	CG8315	FBgn0034058	FBtr0087267	2	1	1	60	2R	11879515	11879533	CGTTGATGTATTCTACGGC		58	11879473	11879491	CACACGGATGTTAAGATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	1	5	7	80	2R	11836644	11836723	CATTTGCTACGTGCTACTC		58	11836582	11836603	GCTCTAGTTATATTCGAGAAGG		57	NA	
Drosophila melanogaster	50	Mtk	FBgn0014865	FBtr0087386	1	1	1	132	2R	11296384	11296402	CAACTTAATCTTGGAGCGA		57	11296498	11296516	GTTGGTTAGGATTGAAGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cp1	FBgn0013770	FBtr0087592,FBtr0087591,FBtr0087593	2	3	3	175	2R	9854324	9854342	AGAACAAGCACAAGATTGC		58	9854541	9854559	TCCCTTGAAGCTTTCATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	AGO1	FBgn0026611	FBtr0087613,FBtr0087612,FBtr0087614	2	3	3	103	2R	9835755	9835774	GTATCAGCTATGCCATACGT		59	9835605	9835689	CCAGATGATATCTGGCACG		59	NA	
Drosophila melanogaster	50	CG6347	FBgn0033874	FBtr0087637	3	1	1	73	2R	9725501	9725519	CCAGAAAGGAGATAGCCAC		59	9725994	9726015	GATATGGCCATTCGTATATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13331	FBgn0033850	FBtr0087672,FBtr0087673	2	2	2	97	2R	9409560	9409578	ACTTCATCCTCGACTACGA		59	9409834	9409852	AATCTCGTAGGATTCCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3814	FBgn0025692	FBtr0087814,FBtr0087813	1	2	2	139	2R	8763437	8763613	TATTGATGTGCCAATTGCTG		59	8763255	8763274	CATACAGATCATGGTCACGA		59	NA	
Drosophila melanogaster	50	Sin3A	FBgn0022764	FBtr0087887,FBtr0087889,FBtr0087890,FBtr0087888	3	4	4	92	2R	8467292	8467310	CAACATGGACTCGAATACG		58	8467116	8467237	TTGGAGACAACCTTATCCAG		59	NA	
Drosophila melanogaster	50	CG13196	FBgn0033645	FBtr0088084	2	1	1	157	2R	7572774	7572852	AATGATGTACAAGCTCGCA		59	7572635	7572653	CTTAGAAGGAGCTCTTCGC		59	NA	
Drosophila melanogaster	50	CG9003	FBgn0033639	FBtr0113067,FBtr0113068,FBtr0088088,FBtr0113069	3	4	4	108	2R	7531917	7532003	GATCAGTCCGTGAGAACTC		59	7531827	7531845	AATACCTGCTGATGGACTG		59	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	1	9	9	149	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349137	6349157	GACAGCATCGAATACAAACTG		59	NA	
Drosophila melanogaster	50	CG12909	FBgn0033507	FBtr0088348	1	1	1	60	2R	6198452	6198470	AGTATGCCAAGCATCTGTC		59	6198494	6198512	TTCTGAAACTTCTTCGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1407	FBgn0033474	FBtr0088436,FBtr0088435	2	2	2	99	2R	5919790	5919808	ATGCTTCTGTTCTACCACC		59	5919621	5919728	GTATCCTCCATTGATCTGGT		58	NA	
Drosophila melanogaster	50	Orc6	FBgn0023180	FBtr0088482	1	1	1	60	2R	5733261	5733280	GAGCAAAGTACCATCTAGCA		59	5733220	5733239	ATTCTCATTCTGGTTCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10459	FBgn0033440	FBtr0088468	3	1	1	60	2R	5595516	5595536	TGTGAGGGATGTAATCTTCTG		59	5595556	5595576	GCGATCATATGAAGAGGAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8712	FBgn0033258	FBtr0088823,FBtr0088822	2	2	2	62	2R	3985321	3985341	CCTCCAAGTCTATAAGTTCAG		57	3985279	3985297	GCTGTGATACCTCATTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8713	FBgn0033257	FBtr0088780	3	1	1	88	2R	3983739	3983818	TTATGGTCGGGTATATCCTG		58	3983868	3983887	TATAAGGCAGAAGTAGCTCC		58	NA	
Drosophila melanogaster	50	Dgk	FBgn0085390	FBtr0112581,FBtr0112579,FBtr0112578,FBtr0112580	3	4	4	90	2R	3724813	3724831	AGAGTAAGAAACTACGCGC		59	3724658	3724759	TCTCCAAAGTCCTGAATGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG17985	FBgn0033199	FBtr0088946	2	1	1	60	2R	3539849	3541991	ATGACGAAGCCAATATGGA		58	3539807	3539825	ACCATGTGGTTAAGCAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012	3	7	7	84	2R	3287432	3287450	GATCTACGACAAGGAGACG		59	3287308	3287384	GGTGACTTCATTCCTGGTC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111081	2	1	60	86	2R	3247854	3247873	TAAGGTGCTTCAGTTCTCTG		59	3236472	3247807	TTGTACCATCTAAAGACTGGC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111093,FBtr0111084,FBtr0111066,FBtr0111082,FBtr0111080,FBtr0111101,FBtr0111081,FBtr0111075,FBtr0111071,FBtr0111073,FBtr0111077,FBtr0111068,FBtr0111078,FBtr0111083,FBtr0111051,FBtr0111085,FBtr0111060	3	17	60	161	2R	3241193	3249236	ATTGGTCATCACAGAACCC		59	3236460	3236479	CCTTCGATGAACTTGTACCA		59	NA	
Drosophila melanogaster	50	pk	FBgn0003090	FBtr0089043,FBtr0089044,FBtr0089042	1	3	3	95	2R	3108297	3108315	TTATCTACTTCCACCGGGA		59	3108374	3108516	CCAGGATAATCTCATCGCA		58	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086205,FBtr0086204,FBtr0086197,FBtr0086201,FBtr0086196,FBtr0086198,FBtr0086202,FBtr0086199,FBtr0086200,FBtr0086203	3	10	11	100	2R	2764992	2765010	GTACGAAACAAAGGTAGCG		58	2764846	2764864	AGAACATCCTTGACATGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	sced	FBgn0013732	FBtr0086110	3	1	1	60	2R	2546666	2546684	AAACTACTACCAGACACCA		57	2546708	2546726	ATAGGAGGGTATCTTGTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sced	FBgn0013732	FBtr0086110	1	1	1	60	2R	2546680	2546701	CACCAAGAAAGTCGATTATCAG		59	2546722	2546740	CAGCTGTTCGGATAATAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or42b	FBgn0033043	FBtr0086051	3	1	1	61	2R	1684849	1684869	CTTTCAGATATCCATGAGCAG		58	1684744	1684762	TGGTTATCACGGAGAAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	gus	FBgn0026238	FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753	1	6	6	61	2R	1005304	1008282	TTGGTGGATTAGATCCCGA		59	1005261	1005279	TTGACGAATTGTTCTTCGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Nipped-B	FBgn0026401	FBtr0111119,FBtr0111118	3	2	2	82	2R	609820	614139	CTTTGACTCAGAGGATGTAGAC		59	609759	609778	ACTTGGCAACATCAGTACTC		59	NA	
Drosophila melanogaster	50	Stlk	FBgn0046692	FBtr0111111,FBtr0111112	1	2	2	61	2R	447873	447891	GGAAGTTGCAATAGCACTC		58	447913	447934	CGGAGTGAATATAAGTAAGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-2263	FBgn0082990	FBtr0113537	2	1	1	61	2L	5187845	5187864	AAACGATTATTGGATGCTGG		58	5187888	5187906	ATGGAGTGATGCGATTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His3:CG33863	FBgn0053863	FBtr0091867	1	1	1	60	2L	21535006	21535024	TCGAAGATACCAACTTGTG		57	21535048	21535066	ATGTCTTTGGGCATTATGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14401	FBgn0032900	FBtr0081430	3	1	1	136	2L	20870739	20870758	CTTACCAAGTACCATGAGGG		59	20870928	20870946	CCGAGGAAGTTCATAAAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG2608	FBgn0032870	FBtr0081384	3	1	1	92	2L	20646107	20646125	GACTCAATACTCAACGCCA		59	20646181	20646199	CATCCGCTCTAACATTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Victoria	FBgn0053117	FBtr0081309	1	1	1	60	2L	19913190	19913208	ATTGACACCTCAGGAAAGG		59	19913148	19913166	TCGTTGTGCCTTATATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS26	FBgn0004413	FBtr0081090,FBtr0081089,FBtr0081091	3	3	3	71	2L	18442715	18442733	CCAGAACAGGAAGTAGAGG		58	18442662	18442680	TATGGAGATGTCAGGTGGT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG31785	FBgn0051785	FBtr0081044	3	1	1	113	2L	18124480	18124498	GTTCATATGTCCGGTAGCC		59	18124318	18124404	CACATCATTTGTGTCTGTCG		59	NA	
Drosophila melanogaster	50	CG17912	FBgn0032600	FBtr0080893,FBtr0113041	1	2	2	174	2L	16744378	16744700	GCGTACAGTAATGCTACCA		59	16744836	16744856	GTGGATGCATAATCTTTGTGG		59	NA	
Drosophila melanogaster	50	grp	FBgn0011598	FBtr0080886,FBtr0080884,FBtr0080885	3	3	4	113	2L	16692022	16692041	CAGGATAAGCATATCCTCCG		59	16692117	16696595	CACGTCTGGTTCTATTCGA		59	NA	
Drosophila melanogaster	50	ppk	FBgn0020258	FBtr0080638	2	1	1	131	2L	14379783	14379858	CAGGGCTATAAGGTCTTTCTC		59	14379672	14379690	CAAATTGTCAGTGGACACG		59	NA	
Drosophila melanogaster	50	wb	FBgn0004002	FBtr0080620,FBtr0080619	2	2	2	85	2L	14321169	14321187	TCTGATAGGAAGAGCAGCT		59	14321236	14321318	CTCGACAGTTCTGACAGAC		59	NA	
Drosophila melanogaster	50	CG33115	FBgn0028542	FBtr0080617	2	1	1	87	2L	13968826	13968905	TTGCTATATGACCTGCGAG		59	13968757	13968778	CGTCGTATTCTTATCGTATCGA		59	NA	
Drosophila melanogaster	50	CG18507	FBgn0028527	FBtr0080528,FBtr0080527	2	2	2	137	2L	13668243	13668261	ATCAGCATAATGGAGGTGG		59	13668697	13668716	GAAGTGTGACAATCACATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16850	FBgn0032527	FBtr0080505	1	1	1	185	2L	13475616	13475634	CTCCGCTTAGTCATCATGG		59	13475783	13475801	CTTCCATATGCGAGACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rep4	FBgn0028406	FBtr0080478	3	1	1	131	2L	13285635	13285707	GTCATTACAACAGATGCCG		58	13285522	13285540	ATACTCCGTTATCATGCGG		59	NA	
Drosophila melanogaster	50	Tom70	FBgn0032397	FBtr0080311,FBtr0080309,FBtr0080310	1	3	3	60	2L	12037589	12037607	CCACCAAGGATATGAACGA		59	12037547	12037565	AACATCTCCAGGATACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31705	FBgn0028490	FBtr0080244,FBtr0080243,FBtr0080242	3	3	3	80	2L	11524604	11524623	AGGAGCTGTTTACTATCCAC		58	11524475	11524493	AATGCTCCAGCGATAAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ca-beta	FBgn0015608	FBtr0080218,FBtr0080217,FBtr0080220,FBtr0080219	3	4	4	119	2L	11165819	11165837	GACAATAACTGGTGGATCG		57	11165652	11165670	ATACAGTCTTGAGGGTCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	dUTPase	FBgn0013349	FBtr0080157,FBtr0080156	3	2	2	124	2L	11011620	11011638	CATTGTCAAGACCGATCTG		58	11011726	11011744	GATAATCCTCGTCCACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486	3	9	10	161	2L	10831340	10831358	GTCACAGGATTATCGGTCG		59	10826069	10830602	TTCGAGCAGGAAAGAATCTC		59	NA	
Drosophila melanogaster	50	Trim9	FBgn0051721	FBtr0080096	2	1	1	84	2L	10620161	10620309	ATCAGGATACTCAAGGACCA		59	10620356	10620374	GAGCTTCAATGCAGAACTG		59	NA	
Drosophila melanogaster	50	Fatp	FBgn0021953	FBtr0080133,FBtr0080134	2	2	2	80	2L	10512982	10513000	GCTGGTCTACATCTACACC		59	10512855	10512939	GCGATAAACAGATAACGGGA		59	NA	
Drosophila melanogaster	50	cdc2	FBgn0004106	FBtr0080051	3	1	1	98	2L	10385158	10385176	GTGACTCGGAAATTGACCA		59	10385021	10385039	TCTTATAGTCGGGTAGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13125	FBgn0032163	FBtr0079898	1	1	2	100	2L	9924157	9924307	GATACGGTAGAAGGCATCG		59	9924075	9924093	GACAATGGGAAATCTGGCT		59	NA	
Drosophila melanogaster	50	numb	FBgn0002973	FBtr0079821,FBtr0079822	2	2	2	102	2L	9460693	9460711	TGTCGAGGTCTTTGAATCG		59	9460961	9460979	GCTGACATGAAGTAATCCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32988	FBgn0052988	FBtr0079736	1	1	1	60	2L	8865456	8865477	ATCAATGATATGCGGTATCTCC		59	8865498	8865516	TGAATGCGATCAGGATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pvr	FBgn0032006	FBtr0079629	1	1	6	154	2L	8227796	8227814	AAATCTGTCGGTCGATACG		59	8226597	8227678	TTGCCGTCTTCAATAAAGC		58	NA	
Drosophila melanogaster	50	Herp	FBgn0031950	FBtr0079493,FBtr0079494	1	2	2	87	2L	7797320	7797411	GGGTGCGATTTATCTATATCAC		58	7797254	7797272	GCCAGCATTATTGTTACGA		58	NA	
Drosophila melanogaster	50	Uro	FBgn0003961	FBtr0079486	2	1	1	61	2L	7780872	7780890	ATGATCGCATCTTTAGCAC		57	7780915	7780933	CAAGTTCTCGGTATCGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Slob	FBgn0024290	FBtr0100158	1	1	4	80	2L	7649077	7649315	CAAATTGGCCAGATTCTGG		59	7649015	7649033	GACTAAGTCCTCAACGGAG		59	NA	
Drosophila melanogaster	50	wg	FBgn0004009	FBtr0079433,FBtr0079432	3	2	2	99	2L	7313107	7313125	ATGAATCTGCACAACAACG		59	7314366	7314384	TCTTCACTGTACACGATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17377	FBgn0031859	FBtr0079378,FBtr0079377,FBtr0079376	3	3	3	130	2L	6801803	6801822	ACAATGATAGCATGTCCTGG		59	6801637	6801710	TACTTATAAGCCACACGCG		59	NA	
Drosophila melanogaster	50	Liprin-alpha	FBgn0046704	FBtr0079301,FBtr0079300	2	2	2	80	2L	6726527	6726603	AGAAAGAGGATCAGGAGGA		58	6726647	6726665	CATGCAACGATGTAGACTC		58	NA	
Drosophila melanogaster	50	CG34180	FBgn0085209	FBtr0112373	3	1	1	65	2L	6060733	6060752	TAAGCATATGCAGCTTTCCA		59	6060780	6060798	TAATCACGGCCTGTATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9135	FBgn0031769	FBtr0079186,FBtr0079185	3	2	2	130	2L	6052015	6052092	AAGAGAAGTACCGATATGTGG		59	6052184	6052202	CAACTTGATGTCTTGGCTG		59	NA	
Drosophila melanogaster	50	Acp26Ab	FBgn0002856	FBtr0079156,FBtr0079157	3	2	2	60	2L	5892669	5892688	GTTCACAATCAAGATCCCAG		58	5892628	5892648	CTGTAGTCGTATAGGGTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8965	FBgn0031745	FBtr0079158	2	1	1	165	2L	5861558	5861576	GAAATCGATCCGATTCGGT		59	5861348	5861429	ACCTTGATTGTGGTCTGTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14006	FBgn0031733	FBtr0079167	1	1	1	60	2L	5727787	5727805	CGTTAAACCAATGGTCCAG		58	5727745	5727766	ATATGAGTCTTGATAAGGGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33995	FBgn0053995	FBtr0100049	3	1	3	170	2L	5047048	5047066	AAGGAATTCGGAATTCGGA		58	5047198	5047284	CGTTATAGATAGCTGCATTCC		58	NA	InUTR
Drosophila melanogaster	50	hoe1	FBgn0041150	FBtr0077395,FBtr0077398,FBtr0077397,FBtr0077399,FBtr0077400,FBtr0077396	2	6	6	106	2L	4909615	4909687	CATTCTATGGGTTTCCGCT		59	4909527	4909546	GATTCAAGGTGCTATTCTGC		58	NA	
Drosophila melanogaster	50	CG3964	FBgn0031574	FBtr0077501,FBtr0077502	2	2	2	111	2L	3865422	3865505	CATCATCAAGAACACCACC		58	3865580	3865598	GAACGATCCGGGTATATGG		59	NA	
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305	3	10	10	83	2L	3624270	3624291	CAGCTAATTTCCAATCTAGACG		58	3623866	3624229	GAATTCCTCGTTGATCTTTCTG		59	NA	
Drosophila melanogaster	50	CG3165	FBgn0031484	FBtr0077642	2	1	1	61	2L	2977853	2977872	GATGTGCAGGAAATCATTCC		59	2977896	2977914	TCCTTGAGGCAAGTTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2991	FBgn0031474	FBtr0077627,FBtr0077625,FBtr0077626	1	3	3	121	2L	2866633	2866651	CCTCACAATTGCATCAGTC		58	2866736	2866826	GTTAACTGGAACCTTGGTC		57	NA	
Drosophila melanogaster	50	CG2964	FBgn0031462	FBtr0077722	3	1	1	70	2L	2814017	2814036	ATTGTGATAGTGAGTGCCTG		59	2814069	2814087	AAGAAAGCGTAGACCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3528	FBgn0031430	FBtr0077781	3	1	1	62	2L	2517903	2517924	CTATGTAGACAGCTTCATAACC		58	2517862	2517880	CTCTGGATCTCTTTGTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5561	FBgn0031333	FBtr0077947	2	1	1	60	2L	1353771	1353793	GTTACGATAAGAGGATACCAGAC		59	1353733	1353753	TCTGATATCGTCATAGGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dbe	FBgn0020305	FBtr0078030	1	1	1	61	2L	869441	869459	CAGAAGTGTTCCCTTCGAG		59	869398	869416	TGATGTCACACCCAATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gs1	FBgn0001142	FBtr0078115,FBtr0078114	2	2	2	63	2L	132960	132978	CTAATTAGCGATCAGGAGC		57	133004	133023	CGTCCACGTCTAATAAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)gl	FBgn0002121	FBtr0078166,FBtr0078171,FBtr0078170,FBtr0078167,FBtr0078168,FBtr0078169	2	6	6	90	2L	12208	12293	GACATTAATGGAGTTTCGTCAC		59	12139	12157	CTAAAGCAATACGCTGCAG		59	NA	
Drosophila melanogaster	50	Cdc42	FBgn0010341	FBtr0074751,FBtr0074752	1	2	2	232	X	19592047	19592065	GCTCATCTCGTATACAACC		57	19592261	19592340	ACTTCTCCTTGACGTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12432	FBgn0030843	FBtr0074433	3	1	1	60	X	17428226	17428244	GGATGCCATTGAGATTTGC		59	17428184	17428205	CTTGAGATGATATGGTGATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8675	FBgn0030834	FBtr0074446	2	1	1	112	X	17142724	17142743	ATGATTCGGACTTCGATTCC		59	17142631	17142649	TTATTTCGCCTTAGCAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0136	FBgn0026666	FBtr0074084	1	1	1	128	X	15629207	15629297	GACAAGTTGGATGAGGAGG		59	15629456	15629474	GTTAAACACGAACTCGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	cngl	FBgn0029090	FBtr0089294,FBtr0089293	3	2	2	83	X	15293119	15293253	GCCTAATGGTATACGACGA		58	15293054	15293073	GTATCAGCGCTATCATATCG		57	NA	
Drosophila melanogaster	50	CG33174	FBgn0053174	FBtr0073826,FBtr0073825	1	2	2	80	X	13696195	13696279	CTCAAGAGCTTGGTTATCCT		59	13696322	13696340	TGCAGTGGTGTAGTAATGC		59	NA	
Drosophila melanogaster	50	CG11134	FBgn0030518	FBtr0073818	2	1	1	161	X	13632796	13632814	TACCGATCATCGAGAACAC		58	13632939	13633032	CATAGCATTCCGACATGGT		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG11162	FBgn0030509	FBtr0073811	3	1	1	100	X	13571660	13571751	CCAAGTTCAACTACAATTACGG		59	13571811	13571830	CTTAATCCTTTGCGAAGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	c12.2	FBgn0040234	FBtr0071321	1	1	1	80	X	9217684	9217702	ATCATGTCCAGGAGAAACC		58	9217745	9217817	CATCGTAACCATTGAACCTG		58	NA	
Drosophila melanogaster	50	CG12065	FBgn0030052	FBtr0071215,FBtr0071214	3	2	4	91	X	8480265	8480589	ATACACCACAGTCGATTCC		59	8481291	8481311	GAGTATACACATTCGATTCGC		58	NA	
Drosophila melanogaster	50	Tom40	FBgn0016041	FBtr0071074,FBtr0071073	1	2	2	125	X	7632816	7632935	GAATCTGGTCTTCAGAGGC		59	7633024	7633042	AAGTTGTTCTTCACGTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32727	FBgn0052727	FBtr0071056	3	1	1	104	X	7301440	7301458	TCTTTAGATCGCCCAACAG		59	7301526	7301603	ACATCCGTTTCTGAAAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1999	FBgn0029947	FBtr0071054	1	1	1	60	X	7253547	7253565	ATGAAATATCCCGTGAGGT		58	7253588	7253607	CGTTTATATGTCCTGACCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ctr1A	FBgn0062413	FBtr0070951	3	1	1	107	X	6559632	6559650	TGGAATATCGACCTGTGAC		58	6560884	6560902	TAATCGACAGCATCGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32750	FBgn0052750	FBtr0070881	3	1	1	168	X	6089883	6089901	ATAGCCACCTTTACAACGG		59	6089675	6089751	GAAATTGAGAGGCTGTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40855	FBgn0085776	FBtr0114227	2	1	1	98	U	7725813	7725832	TAACAATGGCTATCAAGCTG		57	7725890	7725911	GAAGAATTGTAGGTAATAGCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40801	FBgn0085520	FBtr0113933	1	1	1	289	U	2929777	2929869	TTCAATTCATCGTTGAGGG		57	2929406	2929424	AATGGGTATCATCTGGCAC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG31998	FBgn0051998	FBtr0089145	2	1	1	87	4	224662	224680	CAAACGAAGCATACCAGAC		58	222272	224612	TGACGAGTGATATCTCTGTG		58	NA	
Drosophila melanogaster	50	RpL6	FBgn0039857	FBtr0085804,FBtr0085805	2	2	2	93	3R	27420766	27420784	CAAGAAGGACCAGAAGGAG		59	27420691	27420710	CATGTTCTGCAAGTACTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dco	FBgn0002413	FBtr0085742,FBtr0085744,FBtr0085743	3	3	3	210	3R	26884321	26884339	ATACAAAGCCATAAGCGAC		57	26883518	26883536	GATCCCGATCCTATCTTGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG5815	FBgn0027574	FBtr0085106,FBtr0085107	3	2	2	132	3R	22939931	22940011	AAAGACGCATTTACGACGA		59	22940106	22940125	TAACGACGCTTATCATACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10514	FBgn0039312	FBtr0084864	2	1	1	119	3R	21104577	21104596	ACAAGATATTCACTGAGACG		57	21104415	21104495	CTACCGTAGAATGCAAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11857	FBgn0039303	FBtr0084814	3	1	1	165	3R	21085148	21085227	CTCACAGACCTACCAATCC		59	21085355	21085374	GATAAACAGGTTCAAGTGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myo95E	FBgn0039157	FBtr0100517,FBtr0084579,FBtr0084578,FBtr0100518,FBtr0100519,FBtr0100516,FBtr0100520	3	7	7	85	3R	19984736	19984819	TATACGAAGCGATCCTTGG		58	19984669	19984687	AACTTTAGAACCACTGCGA		59	NA	
Drosophila melanogaster	50	CG7126	FBgn0038602	FBtr0083593	3	1	1	168	3R	14128053	14128136	ATAGAGCAACAGTTCTCGG		59	14127903	14127922	TCCAACATACCATAACGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5285	FBgn0038490	FBtr0083409	3	1	1	150	3R	12976555	12976573	ACACCGTTCATCTACAACC		59	12976687	12976766	CATTGCCAAAGGGAATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9632	FBgn0038377	FBtr0083186	2	1	2	106	3R	11686224	11686242	ATCTCCTGTGGAACATGAC		58	11686312	11686498	GACCACCTCAATATCGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yellow-e3	FBgn0038150	FBtr0082759	3	1	1	277	3R	9229964	9229982	CTACATTCCCAGCGTATCC		59	9229640	9229723	GAAAGTACAGAAAGCGGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	nerfin-2	FBgn0041105	FBtr0082177	3	1	1	124	3R	5898513	5898531	GAAACGAGTTGTGGAAACG		59	5898617	5898768	TCTTTAGGTAAGCTTGACGTC		59	NA	
Drosophila melanogaster	50	CG7352	FBgn0037581	FBtr0081842	3	1	1	130	3R	4174217	4174236	GAGTGACTTAGTCCAGAAGC		59	4174328	4174401	TTTCGATTTCTAGGACTTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9636	FBgn0037556	FBtr0081806,FBtr0081805,FBtr0081804	2	3	3	81	3R	4068558	4068648	ATAGCCGAGATCAAACACTG		59	4068496	4068514	TCTCTTGACGATGCAAGAG		59	NA	
Drosophila melanogaster	50	Os-C	FBgn0010401	FBtr0081781	2	1	1	299	3R	3804786	3804856	GGATGTGATCACAGTTGCT		59	3805173	3805191	GCAAACAATTCAGAGCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	dj	FBgn0019828	FBtr0089741	1	1	2	60	3R	2885195	2885293	CTTGAGAACTTTAAGGAAGGG		58	2885315	2885333	TTGCGGATCGTGAATAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pi4KIIalpha	FBgn0037339	FBtr0078756,FBtr0078755,FBtr0078757	1	3	3	161	3R	1385034	1385112	CTTCCTCTAAAGACTGGCTC		59	1384892	1384913	GTTGCGTATGATATAATCGAGC		59	NA	
Drosophila melanogaster	50	CG31522	FBgn0051522	FBtr0078941,FBtr0078942,FBtr0078939	2	3	4	81	3R	272537	273433	CTCACATAGTGACTCGAGG		58	272474	272492	GACATATGTGAGGCAAACG		58	NA	
Drosophila melanogaster	50	CG32206	FBgn0052206	FBtr0089795,FBtr0089796	3	2	2	85	3L	19357771	19357789	TCCGACTCATTTGACTTCG		59	19348663	19357724	GAGAATAGCACATCATCTGGA		59	NA	
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075008	1	1	11	83	3L	19297392	19297475	ATCACGATGATTGCCTACC		59	19297327	19297345	CCACAACAGCATAATCCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34256	FBgn0085285	FBtr0112450	1	1	1	60	3L	18982316	18982674	CAAAGACCGCTAATAGAGTG		58	18982275	18982293	TTTGTAAAGTCCGTTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AlCR2	FBgn0036789	FBtr0100242,FBtr0089387	3	2	2	104	3L	18480885	18480903	GATCAGGAAACTTCACACC		58	18480586	18480817	ATGTACGCACTTATGACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33924	FBgn0053924	FBtr0091928	3	1	1	194	3L	17712680	17712698	AGGGTCGATTAAATGTCGT		58	17712451	17712522	CCACGAAGTAAACAGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10627	FBgn0036298	FBtr0075967	3	1	1	268	3L	12521140	12521158	TCCTAAATCACAAGGGCTG		59	12520821	12520909	ATTATCGGTGTCCTCTTTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10660	FBgn0036288	FBtr0075976	2	1	1	103	3L	12481307	12481662	AAATATAGGTTCCGTCACCTG		59	12481224	12481243	TATCTTTGATAGGCAGCCAC		59	NA	
Drosophila melanogaster	50	CG14122	FBgn0036282	FBtr0075985	1	1	1	142	3L	12393886	12393964	ATCATTGCTTCAAGAGGCT		59	12393762	12393780	AGAACCGATCATCAAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32022	FBgn0052022	FBtr0076597	1	1	1	172	3L	8713993	8714066	AACTACCTCAAAGTGTCGC		59	8713839	8713857	TCTGATACTTTACGCTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8044	FBgn0035829	FBtr0076764	1	1	2	265	3L	7969106	7969124	AATGATCGTCAAGATTCCG		57	7968785	7968877	TATTCTCGTCAATGTCGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Srp9	FBgn0035827	FBtr0076750	1	1	1	68	3L	7929588	7929606	AGAACTGGGATGATTTCGA		58	7929638	7929656	TAAGTCGACAGTTCTGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780	1	8	8	125	3L	7811265	7811285	GATGACAAATACAAGGAGGAG		58	7810754	7811178	GTCGGCATATTGTGTTACC		58	NA	
Drosophila melanogaster	50	CG8549	FBgn0035714	FBtr0076943	2	1	1	60	3L	6746718	6746738	CGTTAAGATGAACAGGAACAC		59	6746759	6746778	GTCCTTGAGAATCTTGATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr65a	FBgn0041232	FBtr0076962	3	1	1	70	3L	6659997	6660015	AATCAAGAATCACCCGGAG		59	6659882	6659963	AATCGTTCTAGCAGTTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32245	FBgn0052245	FBtr0073313,FBtr0073311,FBtr0073312	1	3	3	93	3L	4586699	4586719	ACAGACTACTCTACGAAACAC		59	4586774	4588077	GAGTTGAACCTGCATTGTG		59	NA	
Drosophila melanogaster	50	CG32240	FBgn0052240	FBtr0073336	1	1	1	236	3L	4381319	4381395	CATTTGTGACGGTTCTCAG		58	4381038	4381056	TCTTCATGTACTTGGCCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12010	FBgn0035443	FBtr0073074,FBtr0073075	3	2	2	68	3L	3376030	3376104	GATAGATTCGCTTGTTGGC		58	3376136	3376154	ATCCTCAGCTGAACTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	zormin	FBgn0052311	FBtr0110857,FBtr0110858,FBtr0089864,FBtr0110856	2	4	4	129	3L	2132574	2134108	GATTCCAAGTACGAATACGG		58	2132464	2132483	TTACTATCACGTTGCAACTG		58	NA	
Drosophila melanogaster	50	Nxt1	FBgn0028411	FBtr0072241	3	1	1	115	2R	19699387	19699462	CGATTTGAAAGCCAAGGTC		59	19699220	19699238	CATTGTCCAAATAGAGGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3536	FBgn0034775	FBtr0071916	3	1	1	200	2R	18634397	18634416	GTATACTCAATATGGGCACC		57	18632233	18632560	AGTATTTGACTTTCTCCAGC		57	NA	Nonspecific
Drosophila melanogaster	50	CG15658	FBgn0034602	FBtr0071583	3	1	1	91	2R	17085587	17085607	CGGACATTAAGTTTCTGATGC		59	17085660	17085743	ATCAATTTCCTGGAGCGAG		59	NA	
Drosophila melanogaster	50	CG17999	FBgn0034552	FBtr0071561	2	1	1	158	2R	16736806	16736824	TGAAGACAGCATTACAGCA		59	16736466	16736622	TAGGTGTTCGGATTCTTGC		59	NA	
Drosophila melanogaster	50	ena	FBgn0000578	FBtr0086583,FBtr0086584,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582	2	6	6	93	2R	15048400	15048489	AGAATAAGGTCACCACCTC		58	15048546	15048564	TTAGAGCTTCGTCCTATGG		58	NA	
Drosophila melanogaster	50	CG10912	FBgn0034296	FBtr0086807	3	1	1	101	2R	13944226	13944244	CAATTCCACCTTCGAATCC		58	13944051	13944161	GAATATGTCGGACCCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tef	FBgn0086350	FBtr0087014	2	1	1	147	2R	12942844	12942862	ATCCGCAAGTTAAAGATGG		57	12942657	12942675	TCGGGTTATCTGTGATTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5550	FBgn0034160	FBtr0087033	1	1	1	85	2R	12704661	12704680	CAATGCCACTATCAACTGTG		59	12704726	12704809	GATATGCACCATTCAGATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6262	FBgn0034121	FBtr0087151,FBtr0087152	2	2	5	175	2R	12249021	12249226	TCGAGAAGTACTACTGCGA		59	12249365	12249383	TGATCCTCTGGATTTGCTC		59	NA	
Drosophila melanogaster	50	Obp50b	FBgn0050073	FBtr0087552	1	1	1	89	2R	10258866	10258884	AGTTGGTCTACTGTTGTGG		59	10258937	10259009	AAGGACCATAGTCATCCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13331	FBgn0033850	FBtr0087672	1	1	2	275	2R	9409608	9409821	AGAAGACCAGACTGAGAGG		59	9410060	9410078	GTTCCATGTTATAGGTGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17059	FBgn0040754	FBtr0087739	2	1	1	94	2R	9107892	9107910	AACATGAAACCGTCTCTGG		59	9108278	9108296	ATCATCATTCCTGTGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930	3	5	6	106	2R	8335508	8335527	TATCATAACCTCAACAAGCG		57	8335595	8335676	GAGTTATCACTTGTGTACGC		58	NA	
Drosophila melanogaster	50	CG30490	FBgn0050490	FBtr0088209	3	1	1	62	2R	7006863	7006881	CTCAGGATCTAGGAAACGG		58	7004529	7006837	ATATTATTCCCGCTTGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pmm45A	FBgn0033377	FBtr0088630,FBtr0088629	1	2	2	70	2R	4996590	4996608	CTTTGACTCCATGAACGAG		58	4996474	4996494	ACTGTTCCTTGATGTACTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Socs44A	FBgn0033266	FBtr0088784	2	1	1	89	2R	4015685	4015703	TTATCCGGAAGAAATGGCT		58	4015756	4015836	ACACTTGGTTGAGCATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11191	FBgn0033249	FBtr0088868	2	1	1	283	2R	3889250	3889440	GTCCTGTCTGAAGTTCCTG		59	3888985	3889003	TCATCATGTATTTGGTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11125	FBgn0033174	FBtr0088974	3	1	1	133	2R	3336438	3336509	CTAAGAAACGCTACGAACAG		58	3336605	3336623	GTATATGCGGATGTCCTCC		59	NA	
Drosophila melanogaster	50	CG3420	FBgn0033100	FBtr0086135	2	1	1	187	2R	2644445	2644463	ATACTAAGACGGAACCTGG		58	2644138	2644232	TTATCTTTGTCCAGGTGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17266	FBgn0033089	FBtr0086144	3	1	1	87	2R	2563161	2563181	TCAAATACAGTCCCAACTGAG		59	2563028	2563113	TATCATTCGTCCGATTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dpit47	FBgn0033083	FBtr0086146	1	1	1	172	2R	2548733	2548808	AGAAGCTCGAGATAGAACG		58	2548579	2548600	CAGAAACTTTGGATAAAGGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpr12	FBgn0085414	FBtr0112626	2	1	1	97	2R	1744803	1744883	TTGAGAAGAGTCCTACACC		57	1744944	1744962	CGTCTCAATGGTTATGTCG		58	NA	
Drosophila melanogaster	50	CG9243	FBgn0032926	FBtr0110945	1	1	2	190	2L	21166944	21167019	GAGTAGATATACAAATGCGACG		58	21166439	21166457	ATTCCCGAAATAGTCCTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	lok	FBgn0019686	FBtr0081330,FBtr0081328,FBtr0081329	3	3	3	287	2L	20063602	20063680	CTATTTACTTGCCTGAGTGG		57	20063930	20063948	CTCAAGGAAGTTCTCCTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Hf	FBgn0014000	FBtr0081306	2	1	1	266	2L	19967505	19967586	TCTTATCTGTCTGGCTCTG		58	19967257	19967275	ATGAGGTCGCTGTTTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18806	FBgn0042129	FBtr0081307	3	1	1	60	2L	19966186	19966204	ATTCTCAGGGAGCTTAAGG		58	19966144	19966163	ATGAATCATCGAAGTCCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fon	FBgn0032773	FBtr0081222,FBtr0081223	2	2	2	162	2L	19383754	19383890	CCAGAACTCGTACGATTCC		59	19383610	19383628	TTACGAGTGAACACTGTGG		59	NA	
Drosophila melanogaster	50	elfless	FBgn0032660	FBtr0081046	1	1	1	81	2L	18010980	18011001	CAAATGAGTATTACGGAGACTC		58	18010852	18010938	CTGGAATACTCCAACAGGA		58	NA	
Drosophila melanogaster	50	cact	FBgn0000250	FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847	3	4	4	65	2L	16314858	16322977	AGATTCGCAACTACGATGG		59	16314811	16314829	AGATATCAATGTGACCCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7631	FBgn0028945	FBtr0080754	2	1	1	77	2L	15628887	15628967	ATCTGAGGAGTTTGATGCT		58	15629006	15629026	CGAATACAAGACGAATACTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5945	FBgn0032494	FBtr0080450	1	1	1	60	2L	13240852	13240870	CCAAAGATCAAGGACTTGG		58	13240894	13241506	TATCCAGTTCAGGATCTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020	1	17	17	86	2L	12723994	12724013	AGACCTATCAGATCAGACAG		57	12724062	12724215	ATTTGAGCACCTTAATGCC		58	NA	
Drosophila melanogaster	50	CG17768	FBgn0032240	FBtr0100253	2	1	1	77	2L	10403555	10403747	GTTATTTGCACCTCAAAGGA		58	10403497	10403515	ATATTTGATGGTGCTCCCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4901	FBgn0032194	FBtr0079947	1	1	1	77	2L	10212204	10212222	AGATTACATCCACACCGTG		59	10212263	10212344	AATATCAACACGTCGTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	jp	FBgn0032129	FBtr0113030,FBtr0079861,FBtr0079860	1	3	3	85	2L	9549654	9550211	AGGTTAAGGACTGGTTTGTG		59	9549588	9549608	CATGTAGACAAATAGAAGCGC		59	NA	
Drosophila melanogaster	50	CG7224	FBgn0031971	FBtr0079532,FBtr0100151	3	2	2	158	2L	7999166	7999265	AGTGAGCTATCTATCGACG		58	7999387	7999405	GAGAATTCATCCAGCTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Traf1	FBgn0026319	FBtr0077429,FBtr0112925	2	2	3	126	2L	4372535	4378920	AGATTATCTATCCCGGTCCC		59	4379009	4379027	TTACAGGCGTTGAGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Art2	FBgn0031592	FBtr0077476	2	1	1	279	2L	4279022	4279098	TTCTTCAGGCACAAGACTG		59	4278635	4278653	ACGACTCGAGCATATTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	sob	FBgn0004892	FBtr0077558	2	1	1	69	2L	3579695	3579713	CAGCTCTTAATCTCCAGGC		59	3579644	3579662	AATACATCCGATTTCCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9870	FBgn0031422	FBtr0077768	2	1	1	68	2L	2383993	2384014	GCTATAGTCTGTTGGTAAACTC		58	2384043	2384114	CGTGAAGGAATAGCAAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31664	FBgn0051664	FBtr0077895	2	1	1	81	2L	1825124	1825194	AAATAACAGGGTCGTGGTG		59	1825061	1825080	CAGAAGTTCACCTTCTTGGA		59	NA	
Drosophila melanogaster	50	CG34016	FBgn0054016	FBtr0100071	2	1	1	156	2L	1099804	1099823	AAACAAGTGGTCAGATTGTC		58	1099942	1102163	AAACAAATACACTGCGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	KH1	FBgn0086130	FBtr0078009	1	1	1	60	2L	812445	812464	CCTAGATGATACGTTCACAG		57	812487	812570	CAAGTGGAAGGGAAATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lectin-21Cb	FBgn0040106	FBtr0078046	1	1	1	63	2L	621511	621529	TCCAATACCGTACGATGAG		58	621132	621484	CGGATAATCGATCAAACGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32658	FBgn0040859	FBtr0073628,FBtr0073626,FBtr0073627	3	3	3	142	X	11985664	11985685	GCTTAGTCTAGGAATCAATTGC		59	11985851	11985869	GTTGGCCAAACATCAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CR32658	FBgn0040859	FBtr0073628,FBtr0073626,FBtr0073627	1	3	3	132	X	11985664	11985685	GCTTAGTCTAGGAATCAATTGC		59	11985841	11985859	CATCAAGTGTGCGTTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33502	FBgn0053502	FBtr0070055	1	1	1	195	X	21482189	21482207	GGAGAGCTTGAAGTTCCTG		59	21480961	21480979	CTTAATCAGGCTCCACTCG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG13008	FBgn0030780	FBtr0074322	3	1	2	60	X	16606132	16606150	GAAAGATTGGAGGAACTGC		58	16606174	16606192	TAGACTCTCCCAATGTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lsp1alpha	FBgn0002562	FBtr0073651	2	1	1	60	X	12384992	12385011	CAGCAAATTTGTGATGGAGG		59	12385034	12385052	CAGGCTAGTCTTCATCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab40	FBgn0030391	FBtr0073669	3	1	2	116	X	12355849	12355868	CTAAAGGTTCTACTGGTGGG		59	12355696	12355771	GATATGAGATGTGCAGTCGT		59	NA	
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	2	8	9	95	X	10692568	10692661	CGAATAAGGGTGAAATTTGC		57	10692492	10692510	GCATGATCCGTTTAATGGT		58	NA	
Drosophila melanogaster	50	Ant2	FBgn0025111	FBtr0073426,FBtr0073425	3	2	2	101	X	10674035	10674054	GTTTATCCACTGGACTTTGC		59	10673656	10673677	GATCACCTTCATTAGACAATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	ey	FBgn0005558	FBtr0100396,FBtr0100395,FBtr0089235	3	3	4	182	4	728297	731562	TGTCACAGTGGAGTAAATCAG		59	731704	733134	TCCTGTTTCATAATACCTCCC		58	NA	
Drosophila melanogaster	50	Eph	FBgn0025936	FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086	1	4	5	108	4	640795	640889	GCTCAACAGATATCCAGGT		58	640961	640979	TTATAGTGTCGAGTTGCCG		59	NA	
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451	3	4	8	101	4	159114	159132	AAGCGGCTAAAGACTAGTG		59	159195	160910	CGTAAGAGTACCAGTCTTGTC		59	NA	
Drosophila melanogaster	50	alpha-Est4aPsi	FBgn0027934	FBtr0090038	3	1	1	126	3R	3353508	3353608	CATTTCGATGCTAACTGGG		58	3353698	3353716	GACAAATCGTGGTGAACTC		58	NA	
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085141,FBtr0114372,FBtr0085144,FBtr0085142,FBtr0085137,FBtr0085138,FBtr0085145,FBtr0085146,FBtr0085140,FBtr0085143,FBtr0112834,FBtr0085139	3	12	12	93	3R	22891840	22891858	GATGAGTACAAACAGGCCA		59	22891698	22891716	TTGGATTATAGCTCTGCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16732	FBgn0039086	FBtr0084419	3	1	1	60	3R	19361143	19361163	CAATTATCTGGAATGGCTGAG		58	19361103	19361124	CGGTTAGAGTATCTTTGTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15499	FBgn0038891	FBtr0084124	3	1	1	183	3R	17357749	17357767	CACATTGATGAAGGTGTGG		58	17357358	17357379	CAGACAATTATGGATTAGAGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	AnnIX	FBgn0000083	FBtr0089517,FBtr0089520,FBtr0089518,FBtr0089519	2	4	4	243	3R	16893207	16893794	TACTACCCATTCAAGTGCA		58	16894001	16894019	TAACATCCTCGAATTTGCC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642	1	13	13	131	3R	14261181	14261201	ATGTCAGATACTCAGAGATGC		59	14260763	14260781	TGTTATCTGTGAGACCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	koko	FBgn0051232	FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629	3	5	5	84	3R	14229544	14229623	TACGATGAGTTCCTCATTGC		59	14229670	14229688	TGACATCGCGTATCTTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	alt	FBgn0038535	FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416	3	6	6	165	3R	13500933	13500951	GTAGCAACCACAATAGCAC		58	13500723	13500804	AATGTGTTTGTCGTCTTGG		58	NA	
Drosophila melanogaster	50	CG5399	FBgn0038353	FBtr0083164	2	1	1	101	3R	11521856	11521874	TGTCCTTCAGCAATTTCCA		59	11522012	11522030	CAGATATCAGGGTCAGAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Kap-alpha3	FBgn0027338	FBtr0082108,FBtr0082106,FBtr0082107	3	3	3	158	3R	5402864	5402942	GAAAGACCAGGATGAAATGC		59	5402725	5402743	TTCTTCAGGTCAATGGACG		59	NA	
Drosophila melanogaster	50	CG8121	FBgn0037680	FBtr0082017,FBtr0082019,FBtr0082018	1	3	3	101	3R	5161887	5161905	TATGCTCATTGTCTTTGCC		58	5161970	5162218	TTCCTCTCGTATTCCTTGC		59	NA	
Drosophila melanogaster	50	CG11619	FBgn0036836	FBtr0075046	3	1	1	60	3L	18980557	18980576	CACCGCTCAATTTGATAGAC		58	18980516	18980536	GACTGATTGTAGGCATATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7011	FBgn0036489	FBtr0075645	3	1	1	97	3L	15155932	15156099	ACAATGCTACTCACTGCTG		59	15155853	15155873	CTTACATTGCTCGATCTTGTC		59	NA	
Drosophila melanogaster	50	HGTX	FBgn0040318	FBtr0114619,FBtr0075720	2	2	2	94	3L	14577188	14583109	CAGGTTAAGGTCTGGTTCC		59	14577112	14577130	CCCATATCGTCCTGTTTCC		59	NA	
Drosophila melanogaster	50	dpr6	FBgn0040823	FBtr0076353	1	1	1	86	3L	10030498	10030518	CCATAAATCTCACTTGCACTG		59	10030563	10033968	CATAATTAATGACCTCCTCGTG		58	NA	
Drosophila melanogaster	50	MTF-1	FBgn0040305	FBtr0113323,FBtr0113322,FBtr0113324,FBtr0076460,FBtr0076459	3	5	5	189	3L	9429056	9429074	CATACGAATGTGAGGTGTC		57	9429335	9429353	TCTTCCGGACATTTGTAGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Cpr65Aw	FBgn0052404	FBtr0077023	3	1	1	64	3L	6135437	6135455	TAATCCTGGTCAGCTTCTG		58	6135391	6135410	GTATCTCAGTATCTGGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14966	FBgn0035415	FBtr0073108	3	1	1	60	3L	3197212	3197230	TCTAGGTCTTCGAAAGAGC		58	3197170	3197188	TATCTTGTTTCGCGATCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1146	FBgn0035346	FBtr0072921,FBtr0072922,FBtr0072923	3	3	3	70	3L	2491992	2492010	CTACTCCATCACCGATCTC		58	2492044	2492062	TTTCGTTGATGTACGTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7995	FBgn0035266	FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767	3	5	5	158	3L	1743700	1743718	CCATCTCCACGTACTTCTC		59	1743909	1743927	TTACATCCGTGATGTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34057	FBgn0054057	FBtr0100835	1	1	2	81	3L	897936	897954	CTAAACGAGTACGACTGGT		58	898054	898072	AAGGGTATAGAAACAGGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Kaz1-ORFB	FBgn0063923	FBtr0072488,FBtr0100851,FBtr0072492,FBtr0072493,FBtr0072490,FBtr0100224	2	6	6	110	3L	217695	217713	AGTACAATCCAATCTGCGG		59	217866	217884	GACAAATTCCCTTGTGCAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	zip	FBgn0005634	FBtr0072398,FBtr0072399,FBtr0100467,FBtr0100466	1	4	4	80	2R	20879487	20879567	CAAATGGATAAGCTGAATAGCC		59	20879428	20879447	CTTCTCCTTCTGCAATTCCT		59	NA	
Drosophila melanogaster	50	Lcp9	FBgn0025578	FBtr0072430	1	1	1	60	2R	20667763	20667782	GAGGCTGATGTTGTAAAGAG		58	20667722	20667743	CATAAGCGTAGTTAAAGTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11406	FBgn0034990	FBtr0100169,FBtr0072276	2	2	2	154	2R	20090339	20093349	CTATCCATTGGATCGTAGCA		59	20090044	20090062	CATATCGCAGCGTATTCAG		58	NA	
Drosophila melanogaster	50	Rep	FBgn0026378	FBtr0086462	1	1	1	101	2R	15380881	15380899	TACAACTGTCGCACTACAC		59	15381021	15381039	AAATGGCTAGATCAGACGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457	1	11	15	108	2R	15365201	15366256	TTCACTCTGGTCAAACCAG		59	15366328	15366346	TTGGAGAAGAAGCTCATGC		59	NA	
Drosophila melanogaster	50	Spt5	FBgn0040273	FBtr0086531,FBtr0086532	3	2	2	83	2R	15328659	15328736	TGGATACAATCCAAGTACCC		58	15328782	15328800	CTGTCCGATCCATACAGAG		58	NA	
Drosophila melanogaster	50	CG34188	FBgn0085217	FBtr0112381	2	1	1	168	2R	11314962	11314981	ATATCATGCAAGATGACGAG		57	11314739	11314757	TAAACTTCCTCCATTCGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Hr46	FBgn0000448	FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367	3	4	4	111	2R	6095623	6095704	CAATTTCCGCGATATTTCCA		58	6095531	6095550	CGAATCTATCGAGAACAGCT		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111101	1	1	60	123	2R	3219876	3229223	GAAAGTTAATGTACCTCCCAG		58	3219773	3219792	TTTCTTCCATGTAACTTGGG		57	NA	
Drosophila melanogaster	50	CG31680	FBgn0051680	FBtr0081383	3	1	1	60	2L	20640330	20640350	AGTACAAATACCTATCCACCG		59	20640370	20640390	GTGTTTACCCTTTCTATCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lok	FBgn0019686	FBtr0081329	2	1	3	245	2L	20061998	20062152	AGATCAAATCGCTGGATCTC		59	20062597	20062617	CATTCTTTAGGATTCGCATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4839	FBgn0032187	FBtr0079944,FBtr0079943	2	2	2	171	2L	10151495	10151514	ATATTAACATACCGCCAGCA		59	10151645	10152707	GCCATTTGATCTTGACTATTCG		59	NA	
Drosophila melanogaster	50	GlcAT-S	FBgn0032135	FBtr0079842,FBtr0079841	3	2	2	132	2L	9621298	9621316	AAATCCCAGAACTAACCCG		59	9621411	9621491	GTAAAGGGCATACCAAATCG		58	NA	
Drosophila melanogaster	50	Cka	FBgn0044323	FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538	1	4	4	98	2L	8036254	8036272	ACATCAATGGAAACGAGAG		57	8036391	8036411	CCACGATTATTTCATCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9641	FBgn0031483	FBtr0077677,FBtr0077676	3	2	2	60	2L	2975673	2975691	GAAGACTTGGGAATTTGGC		59	2975631	2975650	GCTTATTACTACCACCTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NTPase	FBgn0024947	FBtr0077680,FBtr0077682,FBtr0077683,FBtr0077681	3	4	4	213	2L	2881498	2881516	GAAGCTTATCGCAAGAAGG		58	2881242	2881260	ATTTCTCGTCGCTAGTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9883	FBgn0031435	FBtr0077693	2	1	1	60	2L	2578334	2578353	GGCATTAAGAACATCGAACC		59	2578376	2578394	GCTTAAAGGATTCCTCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2789	FBgn0031263	FBtr0078066	2	1	1	62	2L	560104	560122	TTGACATAGTTGCACTCAC		57	560148	560166	TGTTCACTCGGTAGAACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12398	FBgn0030596	FBtr0073976	2	1	1	105	X	14807144	14807217	GATATAGATTTCCTTCGCCAC		58	14807059	14807077	AATCCTGTCTGAGATCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14815	FBgn0023516	FBtr0070368,FBtr0070367	2	2	2	79	X	1762731	1762821	AGTTACGTAGCATCTCCAC		58	1762670	1762688	GAGAGGATTAACTCCACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14298	FBgn0038654	FBtr0083695	1	1	1	143	3R	14701519	14701537	ATCAATCTGACGTTCCTCC		59	14701644	14702464	ATTGTTCAGCTCTTTGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6791	FBgn0037918	FBtr0082458,FBtr0082459	3	2	2	101	3R	7414207	7414283	AGATTGTGACTCCCAATACC		59	7414125	7414143	TGTAACCCTTGTAGCAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33784	FBgn0053784	FBtr0091785	1	1	1	213	3R	5893842	5893918	TACGACTTGCGTACTAACC		59	5894150	5894171	GTCATCATTCAGAACCATTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5047	FBgn0037008	FBtr0078215	2	1	1	70	3L	20513102	20513120	GAAATGGGATTCAATGCCA		58	20512991	20513068	GGAGGAATCATCAAGAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17300	FBgn0036345	FBtr0075892	3	1	1	61	3L	13079885	13079903	ACATTTGCTGTGATTAGGC		58	13079716	13079863	TTAATAATCTCGCTATCAGCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Or59b	FBgn0034865	FBtr0072021	3	1	1	79	2R	19358057	19358075	TCCCATCTCTATGAACAGC		58	19357942	19357960	CCAGATTCATTTGTCGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11206	FBgn0034720	FBtr0071846,FBtr0113106,FBtr0071847,FBtr0113107	1	4	4	80	2R	18227482	18227501	GTATATCACGAGTGTTTGCC		58	18227291	18227440	AGTAGTCGGCATATTCAGTC		58	NA	
Drosophila melanogaster	50	grp	FBgn0011598	FBtr0080886,FBtr0100459,FBtr0080884,FBtr0080885	2	4	4	92	2L	16696754	16697510	TATGTTTAGGTGCAAGGGC		59	16697565	16697584	TGATATGCCTTCTGTAGCAC		59	NA	
Drosophila melanogaster	50	Cf2	FBgn0000286	FBtr0089649	3	1	3	78	2L	4879196	4880311	ATTTAACGACTCACACGGG		59	4879136	4879154	GTCAGATAGTCCTTCACGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mir-281b	FBgn0086607	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	kl-3	FBgn0001314	FBtr0113756	1	1	1	123	YHet	54719	62665	TTCAGTATCCGCAATACAC		57	62752	62770	TTTAAGGGCAGTACTTCCT		57	NA	
Drosophila melanogaster	50	CG17167	FBgn0039941	FBtr0113729,FBtr0113728	3	2	2	127	XHet	57117	57598	CAAGCATCTTAACGACGAG		58	57689	57707	ATAGCGTGACCTTAATGGG		59	NA	
Drosophila melanogaster	50	CR34311	FBgn0085340	FBtr0112509	3	1	1	61	X	20254970	20254989	GATTCAATCAGTGGATGGAC		58	20254928	20254949	CACTATATTGGAAGGTAAGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32745	FBgn0052745	FBtr0070932	2	1	1	150	X	6174690	6174709	CCATCAAGATCTTCAAGCTG		58	6174559	6174577	TGTCTCATCGCAATGAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32730	FBgn0047092	FBtr0071016	1	1	1	185	X	7041895	7041913	CTTATAAGCCGGGTTACCC		59	7040647	7040665	GTGTTCTTACTCGTTTCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14476	FBgn0027588	FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058	1	5	5	94	X	21472297	21472387	CAGTAGATGATTTCAAGATCCC		58	21472224	21472242	GTGCAACATCAAGGTTGAG		59	NA	
Drosophila melanogaster	50	CG14476	FBgn0027588	FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058	2	5	5	95	X	21472298	21472388	CCAGTAGATGATTTCAAGATCC		58	21472224	21472242	GTGCAACATCAAGGTTGAG		59	NA	
Drosophila melanogaster	50	cactin	FBgn0031114	FBtr0077305	3	1	1	62	X	20295784	20295802	GTAGAGGTACTGTCTCTGC		58	20295828	20295846	TTTCTTGACCTTCTCCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14220	FBgn0031036	FBtr0074768	2	1	1	157	X	19495369	19495446	TGAAGGAGCAAATGTACCA		58	19495230	19495249	CATGTACTCCTTGTAGACCT		58	NA	
Drosophila melanogaster	50	l(1)G0156	FBgn0027291	FBtr0074780,FBtr0074781	1	2	2	81	X	19413855	19413945	GAACATTATGCGCATGTCC		59	19413792	19413810	TTCGAACTGGATTTCTGGG		59	NA	
Drosophila melanogaster	50	CG7453	FBgn0030991	FBtr0074667,FBtr0074666	1	2	2	63	X	19074922	19074940	CTGATATACACCAGGAGGG		58	19074967	19074985	GTACCTGGCTTATCCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12672	FBgn0030886	FBtr0074539	3	1	1	60	X	17900777	17900797	TACATATCTCTTTCCCTGTGG		58	17900737	17900755	GAAGTTACTGTCCAGATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arp8	FBgn0030877	FBtr0074544	3	1	1	73	X	17753355	17753373	CTTCGATGCGGAGTATCTG		59	17753300	17753318	TGGATAGCTGCAAGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10598	FBgn0003057	FBtr0074400	3	1	1	139	X	17120018	17120037	ATTAACGAAGGCTACTCTGG		59	17119898	17119916	ATTTACCAGCCCTTGTTCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	mRpL22	FBgn0030786	FBtr0074330	1	1	1	86	X	16678589	16678607	AAGGAGACCATACTGGAGG		59	16678657	16678789	GAAGGATTCGGCTATCCAC		59	NA	
Drosophila melanogaster	50	CG9915	FBgn0030738	FBtr0112992	1	1	1	159	X	16205246	16205324	TCAAATGAACCAGAGAACAG		57	16205106	16205124	AAGCGTTCTTCATACTGAC		57	NA	
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074213	3	1	5	180	X	16174016	16175020	AGAAGAATGTTCGTCAGAC		57	16175164	16175182	GATTTATCCTCCGGTTTGG		57	NA	
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074215	3	1	5	103	X	16175299	16175485	AGTTTAAGATCAGGGTAGTTCC		59	16177711	16177729	TTTGTTTGTGATGCCATCG		59	NA	
Drosophila melanogaster	50	Or13a	FBgn0030715	FBtr0074133	1	1	1	80	X	15870532	15870551	AACAGCCTGTAAGGATTACG		59	15870591	15870683	TTATCGAGGTACTTAGAATGGC		59	NA	
Drosophila melanogaster	50	CG8924	FBgn0030710	FBtr0074131,FBtr0074130	1	2	2	67	X	15837294	15837312	GAATGTCCACCTATCCCTG		59	15837402	15837420	AATCCAAGTATTGCTGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Graf	FBgn0030685	FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197	3	6	6	81	X	15646356	15646433	AACCAATGTTCGTTACTCC		57	15646293	15646312	ATAGTTCTCCGGAATGAGTC		58	NA	
Drosophila melanogaster	50	CG8239	FBgn0030683	FBtr0074087	1	1	1	163	X	15643975	15644055	GAATGAAGTTCATCGATTGGC		59	15644180	15644198	TATCGTAGAGTCGGGACAG		59	NA	
Drosophila melanogaster	50	CG15643	FBgn0030654	FBtr0074072	1	1	1	60	X	15465267	15465285	CATTGGATACTACAGCTGC		57	15465225	15465243	CTCATAAACACCGCAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15642	FBgn0030642	FBtr0074076	1	1	1	77	X	15361277	15361295	TCATTTGTGGAACCTGGAG		59	15361218	15361236	TATAGGCGTACGGATTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18210	FBgn0030636	FBtr0074081	2	1	1	151	X	15314086	15314104	CAAGAAGATCCTCTCCAGC		59	15305094	15305112	CATCCTTGACAAACTTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	dob	FBgn0030607	FBtr0073961	3	1	1	60	X	14962461	14962482	ATCAGAAATCAGGAGAAGAACC		59	14962503	14962521	GTGTCAGATTCTCAACGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Flo-2	FBgn0024753	FBtr0073951,FBtr0073949	1	2	6	118	X	14818434	14819687	CAAGATCATGAAGTCATCTTCG		59	14820847	14820865	TCTGCTTGATCTCCTTGAC		58	NA	
Drosophila melanogaster	50	CG1492	FBgn0030361	FBtr0073579	3	1	1	74	X	11905013	11905031	AAGTTTGGATTCGTCAAGC		58	11904876	11904894	ATGACTGGTCAAATTCGAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Sclp	FBgn0030357	FBtr0073591	1	1	1	101	X	11816333	11816351	AAACACAGAGTTGATCACC		57	11816186	11816271	GACAGATTAAGATCTGTGATGG		58	NA	
Drosophila melanogaster	50	CG11802	FBgn0030346	FBtr0073600	2	1	1	65	X	11765984	11766002	ATATACCGCAGTTTCTGCC		59	11765937	11765955	CTGCATCTCGTGTATTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PhKgamma	FBgn0011754	FBtr0090002	1	1	3	87	X	11592621	11593364	CAACCAAATGCTGTTCGAG		59	11593415	11593433	GATCTCAGTGATGCGACTC		59	NA	
Drosophila melanogaster	50	CG2371	FBgn0030323	FBtr0073533,FBtr0073532,FBtr0073534	3	3	3	75	X	11571989	11572007	CATATTGCGTTTGTGGGTG		59	11571932	11571950	GACATTTGATTCGTACCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11697	FBgn0030313	FBtr0073511	1	1	1	60	X	11467401	11467419	AAATATGGATCTGCTGCAC		57	11467440	11467461	GGAAATAGGCTCCTTAATAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073487,FBtr0073485,FBtr0073489	1	3	12	194	X	11284563	11289280	ATCTGGATTCGGTGAATGG		59	11289438	11289456	TATCGTTGATGCTCAGACG		59	NA	
Drosophila melanogaster	50	CG15211	FBgn0030234	FBtr0112977,FBtr0073376,FBtr0112975,FBtr0112976	3	4	4	188	X	10667186	10671999	AAATTGTGGAGTTTGTGCTG		59	10672150	10672250	TCAGCTCCGAGAATATCCA		59	NA	
Drosophila melanogaster	50	Hk	FBgn0001203	FBtr0089804	2	1	2	95	X	10137434	10137453	ACAATACTAGCGACGAATCG		59	10135758	10136876	TGATCGAACGACTGAACTC		59	NA	
Drosophila melanogaster	50	Ost48	FBgn0014868	FBtr0071344	3	1	1	60	X	9051082	9051100	CTTCACTTCAAGGATGAGC		58	9051040	9051058	ACTACTGCGACTTCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15365	FBgn0030077	FBtr0071357	2	1	1	293	X	8950811	8951050	AAATTTGGCAGTACCACTG		58	8950366	8950491	CTCCTTGTCTTTCTCATTGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274	1	10	10	163	X	8768353	8768371	GATGAGAACGAGAACGAGG		59	8768131	8768227	TCTTGTTTCAGAGCCTTGAG		59	NA	
Drosophila melanogaster	50	Cp36	FBgn0000359	FBtr0071203	3	1	1	64	X	8374061	8374079	CAGGAGGTGATCAACAAGG		59	8374106	8374125	TTGTAGACCTTCACGTAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15335	FBgn0030001	FBtr0071193	1	1	1	158	X	8021225	8021243	CAGTCTGGAGTATACGGTG		58	8021003	8021103	CTGGCATTTCTATCGTGAC		58	NA	
Drosophila melanogaster	50	CG33222	FBgn0053222	FBtr0071138	1	1	1	60	X	7792863	7792881	GTAAATACACCGTGGAAGC		58	7792821	7792840	GGATTCTTCTTGAGAACGAC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	dec-1	FBgn0000427	FBtr0071146,FBtr0071145	2	2	3	108	X	7764290	7764311	CCAGTCAATTCGTATCAAAGTC		59	7764005	7764221	GCTTCGGGTTTATTGTCCT		59	NA	
Drosophila melanogaster	50	CG32721	FBgn0027553	FBtr0071077	1	1	1	103	X	7620817	7620835	ATATGAGGATCCCTTCCTG		57	7620670	7620688	AGATGAACTCGTCGAAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	MAPk-Ak2	FBgn0013987	FBtr0070837,FBtr0070838,FBtr0070839	1	3	3	94	X	5654849	5655215	TAGACTACGATCAGATGCA		57	5654773	5654792	GTATAACTCCATCTCCTCGA		57	NA	
Drosophila melanogaster	50	ctp	FBgn0011760	FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704	2	4	4	185	X	4585720	4585738	AGTGAAGTTGTAAGCACAC		57	4592339	4592357	ACTCCTTCTTGATGTAGGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	ctp	FBgn0011760	FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704	1	4	4	184	X	4585720	4585738	AGTGAAGTTGTAAGCACAC		57	4592338	4592356	CTCCTTCTTGATGTAGGCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	peb	FBgn0003053	FBtr0100265,FBtr0070680	1	2	2	178	X	4514859	4514877	ATACGGAGAACTTCACCTG		58	4515310	4515328	AACTTGATGCTGTTTGTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	ng1	FBgn0002933	FBtr0070523	3	1	1	135	X	3136703	3136722	CTGTCACTCACTATAAGCGA		58	3136820	3136838	GGAGTGGATTTCCTATTGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	mRpL14	FBgn0040389	FBtr0070405	1	1	1	70	X	2238352	2238370	CATGTCTACAACAAACGCG		59	2238300	2238318	TTCATCTGTCCCTTGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14798	FBgn0029588	FBtr0089693,FBtr0089694	2	2	2	289	X	1587078	1587096	AAATCGAGCCTCACATCAG		59	1587475	1587493	GACAAAGTCATGGGATCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14797	FBgn0029587	FBtr0070271	2	1	1	204	X	1577962	1577981	TAAGAACGATAGTCTCCAGC		58	1578201	1578219	GATCTGGAATAGGGTCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32813	FBgn0052813	FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219	2	4	6	224	X	1283913	1283931	CAACCATTCGTTCATGGAC		59	1284337	1284355	TTGATAAGGATCACGTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177	3	4	5	149	X	938609	938687	CAATCTGGATAAGGCTCCT		58	938800	938818	CTATCTGGCATACCTGGTC		58	NA	InUTR
Drosophila melanogaster	50	CG3690	FBgn0040350	FBtr0070185	1	1	1	97	X	844061	844079	CAACAATCTGATTGTGGCC		59	843917	844002	GTCCACTGGTCATTATAAGCT		59	NA	
Drosophila melanogaster	50	Or1a	FBgn0029521	FBtr0070070	1	1	1	112	X	210301	210319	AACCTTCCTCCTAAACACC		58	210393	210523	ATCCAAACAAGAAGAGGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40798	FBgn0085519	FBtr0113932	3	1	1	61	U	8057366	8057384	TACAGTTGAGGGAAGTGAC		58	8057323	8057341	TCTGTTAGCGGTTAACTGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41517	FBgn0085662	FBtr0114107	2	1	1	60	U	2654931	2654950	TGTGTAACATCGTTTCAGTC		58	2654890	2654909	TCCTTGTTTAATTCGACCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40092	FBgn0058092	FBtr0113790	2	1	1	75	U	235262	235281	CAAATCTGCTCTATCTCGGT		59	235206	235224	AATTTGTTTCGCGGTTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11077	FBgn0039930	FBtr0089222	1	1	1	60	4	1049844	1049864	TAAAGCGTACCTAAAGGATGG		59	1049804	1049822	TATAGTATCGCCCAGACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me28S-U1554	FBgn0086060	FBtr0114336	2	1	1	64	3R	22630251	22630272	GCCAGCGTAGATATTATATCAC		58	22630296	22630315	CTATGGTTATGCCTCTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or85e	FBgn0026399	FBtr0081896	2	1	1	60	3R	4461540	4461561	ATCAGGTATGATATTAGCCTGG		58	4461501	4461519	CCATTAGCAGACGGAAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2135	FBgn0039874	FBtr0085858	3	1	1	154	3R	27595743	27595762	ACTCTTGGTATCAGAACTCG		58	27595554	27595626	AATAAAGGCGGGAAGTGAG		59	NA	
Drosophila melanogaster	50	ttk	FBgn0003870	FBtr0085827,FBtr0085825,FBtr0085829	2	3	6	150	3R	27554189	27558647	AACAGCACTTCCGTTACTC		59	27558761	27558779	TTTCATCGCTGATCTCCAG		59	NA	
Drosophila melanogaster	50	Med	FBgn0011655	FBtr0085815,FBtr0085816	3	2	2	85	3R	27440095	27440113	TATTATCTGGATCGCGAGG		58	27440162	27440236	AGGTCAAACACCTTTATGC		57	NA	
Drosophila melanogaster	50	pygo	FBgn0043900	FBtr0085806	2	1	1	108	3R	27402727	27403037	TTTCTTTCACAGAACCTGTG		58	27402638	27402656	AATATGCTTGGAAGACACG		57	NA	
Drosophila melanogaster	50	CG31204	FBgn0051204	FBtr0085814	3	1	1	60	3R	27218615	27218635	GCTAACTAATGATCTAGCCCT		58	27218575	27218595	GAAGTGCAAATAGTCATCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31030	FBgn0051030	FBtr0110834,FBtr0085579	3	2	2	60	3R	25991359	25991377	TTACCTTCGATGATCAGCG		59	25991317	25991335	GAATGCATGAAAGTGATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31038	FBgn0051038	FBtr0085497	3	1	6	90	3R	25722870	25722889	TAGATGGTCATGTGATTGGT		58	25722939	25723030	GAGTTTCCAAGTTTAGTTCCAG		59	NA	
Drosophila melanogaster	50	CG7824	FBgn0039711	FBtr0089927,FBtr0089926	3	2	2	64	3R	25684325	25684343	GGAGAAGGAAATGTCCAGG		59	25684279	25684297	CTCTTGCCTCTGTATTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp99a	FBgn0039678	FBtr0085450	1	1	1	211	3R	25497737	25497755	TTCAACGTGGAGAACATCC		59	25497930	25497948	TAGGACCTAAGCCACTAGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Ptp99A	FBgn0004369	FBtr0100523,FBtr0085424,FBtr0085422	2	3	5	130	3R	25288288	25297381	GACAATTATGTGCCAAGCA		58	25297475	25297493	TGTATGTGGAACACATGGT		58	NA	
Drosophila melanogaster	50	Moca-cyp	FBgn0039581	FBtr0085286,FBtr0085287	3	2	2	115	3R	24168242	24168260	GAAGATTCAAACAGCGAGG		58	24168337	24168413	GTTTCATTGTCTTCGCTATCG		59	NA	
Drosophila melanogaster	50	CG31323	FBgn0051323	FBtr0084988	1	1	1	81	3R	22009621	22009639	TGGGCAGTTCAATTATGGA		58	22009684	22009782	CAGTCTATGCAGTAGCCAC		59	NA	
Drosophila melanogaster	50	CG14543	FBgn0039404	FBtr0084968	3	1	1	60	3R	21882773	21882794	GCTGAATTGAGTAAACTTCCTG		59	21882815	21882833	AGGTGATCTTAACATCCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	exo84	FBgn0086476	FBtr0084978,FBtr0084977	2	2	2	193	3R	21876052	21876072	GACACATGGATTAATCTCACC		58	21875824	21875898	ATTACAAAGTTGGGATCCAC		57	NA	
Drosophila melanogaster	50	m4	FBgn0002629	FBtr0084980	2	1	1	105	3R	21850135	21850153	CTACAGCGTGAAGAAACTG		58	21850048	21850067	CAGAGACTCCAAAGAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31300	FBgn0051300	FBtr0084824	3	1	1	117	3R	21110522	21110540	AACTCTGGGATGAAATCCA		58	21110690	21110709	TCCTGTATAAGGTCGTTCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11844	FBgn0046214	FBtr0084775,FBtr0084777,FBtr0113354	1	3	4	85	3R	20949829	20950321	ATAGAACTGGCGTCAAGTC		59	20950370	20950388	TAAGTCCTCAATGTCCTGC		58	NA	Nonspecific
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100624	1	1	17	81	3R	20513556	20513574	AAGCGTCACTATACCACAG		59	20513619	20517191	CTTCATGAACCTTGACTCG		58	NA	
Drosophila melanogaster	50	CG5720	FBgn0028471	FBtr0084633	3	1	1	94	3R	20140913	20140992	TCCACCACTATCCTCTCAC		59	20140837	20140856	AGTACTTGCACATGGTAGTC		59	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084570,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	1	6	6	80	3R	20025044	20025063	CTAAGACTATGTCCGAGCTG		59	20024922	20025001	TGATCAGCGTAAACTTGGA		58	NA	
Drosophila melanogaster	50	Miro	FBgn0039140	FBtr0084596	1	1	2	67	3R	19861354	19861372	AACTGTATACCAAGCTGGC		59	19861018	19861036	GTAGAACAGTATCCAGGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13604	FBgn0039137	FBtr0113275,FBtr0113276,FBtr0113277,FBtr0084509	2	4	4	125	3R	19815591	19815609	ATTTGGATTATGAGCCGGT		59	19815424	19815503	TATTTCCAGTTGTCTGCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG5854	FBgn0039130	FBtr0084495,FBtr0084494	1	2	2	66	3R	19760640	19760754	ATAAGCGCTATTTGATGCC		58	19760784	19760802	TTCATTGTCTCGTTCAGGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	Lsd-1	FBgn0039114	FBtr0084456,FBtr0084455	1	2	3	88	3R	19590398	19590480	CCCGAAATGATGTACTGGA		59	19590532	19590550	ATTTGCTTGACAGAATCGG		58	NA	
Drosophila melanogaster	50	CG10217	FBgn0039113	FBtr0084464,FBtr0084465	1	2	2	156	3R	19587469	19587487	TAGTACAGTCTGCTCTTGG		57	19587273	19587349	ACCAAGAATTCTCGTTCTG		57	NA	
Drosophila melanogaster	50	CG13827	FBgn0039068	FBtr0084376	1	1	1	142	3R	19085753	19085831	AACCTCATGAGGACAATGC		59	19085996	19086014	ACAAAGTCGAGTGAGATCC		59	NA	
Drosophila melanogaster	50	CG17110	FBgn0039050	FBtr0084350	2	1	1	106	3R	18920032	18920108	GTACATTGTGGCAACTTCG		59	18920176	18920196	CAGCTTATCCATCACAAAGTG		59	NA	
Drosophila melanogaster	50	CG33093	FBgn0053093	FBtr0084287	1	1	1	81	3R	18356839	18356859	AGGAGCACTCTTCATAAACTG		59	18356721	18356798	CACTACTCTATGTTGCAAAGC		59	NA	
Drosophila melanogaster	50	CG5386	FBgn0038945	FBtr0084240	3	1	1	173	3R	18167877	18167896	TTTGTTTGGGAGTTGTTTCG		59	18167632	18167650	GTAACTCGTGCAACAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7084	FBgn0038938	FBtr0084202,FBtr0084201	3	2	2	90	3R	18128384	18128492	CTATATGGGCGATACGTACG		59	18128545	18128563	CGAATACACAATGATGGGC		58	NA	
Drosophila melanogaster	50	CG5849	FBgn0038897	FBtr0084125	2	1	1	80	3R	17568319	17568337	TCAAGATGTTTCATCACGC		58	17568378	17568474	CGCTATAACGATATTTCTCCAG		58	NA	
Drosophila melanogaster	50	E2f	FBgn0011766	FBtr0084118,FBtr0084119,FBtr0084117	3	3	3	202	3R	17449734	17449752	AGATCAACGTCTTCCTCTG		58	17449363	17449568	GGGCGTTTGAAATAATCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5892	FBgn0038873	FBtr0084052	2	1	1	127	3R	17069338	17069356	CAATGTGATTGAGTGCCTC		58	17069447	17069524	TCTTGGCCCAAGTATACAC		58	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0112915	1	11	12	80	3R	17033375	17036516	ATCTATCAGATCTGGAAGAGG		57	17036558	17036576	TGGGTATCAGATCATAGCA		57	NA	
Drosophila melanogaster	50	CG12278	FBgn0038847	FBtr0084003	3	1	1	60	3R	16869954	16869972	CCCACTCCCAAGAAATCAG		59	16869996	16870014	AGTACGTAGTACAAGTCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17838	FBgn0038826	FBtr0113256,FBtr0083960,FBtr0083963,FBtr0083958,FBtr0083961	1	5	8	83	3R	16624057	16624076	CTAGCATAATGTCCTTGACG		58	16624122	16631677	TACCGACTACGTATTCACG		58	NA	
Drosophila melanogaster	50	CG5191	FBgn0038803	FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905	1	5	5	88	3R	16396363	16396821	TGTCGACAGGTAAATCCTC		58	16396873	16396891	ATCACGTTGTCTATCTCCC		58	NA	
Drosophila melanogaster	50	CG4323	FBgn0038797	FBtr0083891,FBtr0083892	2	2	2	80	3R	16327293	16327370	CAGATTAGGAGATCTATCGAAGG		59	16327235	16327255	TCATAGTGCATCATGGTAACC		59	NA	InUTR
Drosophila melanogaster	50	CG5023	FBgn0038774	FBtr0083866	3	1	1	105	3R	15999893	15999911	CGAGGACATTCTCAAGGAC		59	15999980	15999998	CATCAGTTGGAAGTTGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bnl	FBgn0014135	FBtr0083795	2	1	1	88	3R	15626212	15653384	GTGAATTCACAATTCTCCAGC		59	15626144	15626162	GTCCATGCAGAGATACAGG		59	NA	
Drosophila melanogaster	50	CG11659	FBgn0038731	FBtr0083797	1	1	1	80	3R	15602169	15602249	GGCAACTATCATCTGACCA		59	15602107	15602125	AATGGTGGTAAGCAAACCA		59	NA	Nonspecific
Drosophila melanogaster	50	GluClalpha	FBgn0024963	FBtr0083787	3	1	4	176	3R	15591434	15591455	AGATCTGCTAGATACAGATAGC		58	15592362	15593259	CTAGAACATTGTCTTGTGGG		58	NA	
Drosophila melanogaster	50	CG3773	FBgn0038692	FBtr0083737	3	1	1	194	3R	15055967	15055985	GTTTATGCCATTCCGAACC		59	15056143	15056217	ATGCGAACCTCCTTTACTC		59	NA	
Drosophila melanogaster	50	CG31475	FBgn0051475	FBtr0083735	2	1	1	199	3R	15026238	15026256	TATCGAAGACTTTGGTGGA		57	15026418	15026508	ATCAGTCATCTCTTTGAGGG		58	NA	
Drosophila melanogaster	50	CG5555	FBgn0038686	FBtr0083746	3	1	1	108	3R	15004415	15004433	CAAGACAGAGGTTTCCGAG		59	15004259	15004346	CTGTACATCCTTTAGCTTAGCT		59	NA	
Drosophila melanogaster	50	gukh	FBgn0026239	FBtr0089767	2	1	4	149	3R	14839140	14839158	GATCAGAAGGAGATCCAGG		58	14846750	14846768	TGCAGTGTCCAATAGATGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Rim	FBgn0053547	FBtr0091514	3	1	1	82	3R	13704711	13705800	GTTGTAAGCGAACAAGAGC		59	13704647	13704665	GTGATATGGTGGTGACCAG		59	NA	
Drosophila melanogaster	50	osa	FBgn0003013	FBtr0089581,FBtr0089582,FBtr0089583	3	3	3	111	3R	13533853	13533871	ACATCTCAATATTCGCCGT		59	13533696	13533778	GATTCGGTTCGGGATACTG		59	NA	
Drosophila melanogaster	50	CG10326	FBgn0038453	FBtr0083336	1	1	1	109	3R	12470098	12470281	CCACAGTGTTTGTAATCGTC		59	12470353	12470371	CATGAGGATGAGTAGGGTG		58	NA	
Drosophila melanogaster	50	CG5073	FBgn0038331	FBtr0083094	3	1	1	81	3R	11198670	11198691	GAAGGAGTTCGTCAAATATTCC		59	11198732	11199123	GAATACTGCATTCGGTTGTC		59	NA	
Drosophila melanogaster	50	Gyc88E	FBgn0038295	FBtr0083028,FBtr0083027,FBtr0110961	2	3	3	95	3R	11013392	11013410	GGATGAGCTGCTGTATCAG		59	11013469	11013557	ACGCTATCGAACATCTCAC		59	NA	
Drosophila melanogaster	50	CG3563	FBgn0038259	FBtr0082989,FBtr0113234,FBtr0082988	1	3	3	125	3R	10616865	10616883	GTTACAGTAGTGCCTCGAC		59	10616970	10619180	GATAAGTGGCTTGTATCTTGC		59	NA	
Drosophila melanogaster	50	stumps	FBgn0020299	FBtr0112893,FBtr0082958	3	2	3	115	3R	10418460	10418478	GAATTCTTGCAACGAGACC		59	10418557	10418736	GCGATTTGCTACTTGTTGG		59	NA	
Drosophila melanogaster	50	CG3259	FBgn0038221	FBtr0082924	2	1	1	97	3R	10128406	10128424	ATTATACACGCCGGAAGAG		59	10128484	10128562	TTGTTAGTTTGGTTGCATCG		59	NA	
Drosophila melanogaster	50	Orc2	FBgn0015270	FBtr0082866	3	1	1	121	3R	9792174	9792192	CATTCATCTACTGGCCTCC		59	9792347	9792365	TTTCGTTCGTATATGGCAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9813	FBgn0038143	FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767	3	6	6	149	3R	9200197	9200215	CACCTTCTGGAACAAACTC		58	9199920	9200008	GCAAACATTACCTTTGCCA		59	NA	
Drosophila melanogaster	50	CG32473	FBgn0052473	FBtr0082743,FBtr0082744,FBtr0082742	1	3	3	94	3R	9136816	9136899	GGAATTTGACGTGAAGCAG		59	9136955	9136975	TGAGCTTATAAGTACTGCCAC		59	NA	
Drosophila melanogaster	50	Osi22	FBgn0038133	FBtr0082738	3	1	1	63	3R	9117197	9117215	CACCAAAGTCTTACCACTC		57	9117242	9117260	CAGAAATGGAACAATGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11670	FBgn0038114	FBtr0113230,FBtr0113231	3	2	2	84	3R	8869499	8869518	CAAGTCGTAAACACTATCGC		59	8869562	8869652	GTATAAACACCTGGAAGTTCAC		58	NA	
Drosophila melanogaster	50	CG11600	FBgn0038068	FBtr0082646	2	1	1	122	3R	8463050	8463068	TAAGATTCCTGCTATCCGT		57	8463261	8463279	GTTGAAGAAAGTGCTTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17639	FBgn0038029	FBtr0114565,FBtr0082576	3	2	2	101	3R	8210530	8210937	TCACGGACTACTATTTCCC		58	8211002	8211020	CCAAGATTGTGTTTAGCCA		57	NA	
Drosophila melanogaster	50	Pglym87	FBgn0011270	FBtr0082620	3	1	1	60	3R	8057660	8057678	ACAAGGACATTATGAGCCT		58	8057618	8057636	TCGTCTAGTTCGTAGACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpr17	FBgn0051361	FBtr0082543,FBtr0082542	3	2	2	100	3R	7936142	7936161	AGATTAGCGATAGTGACGAG		58	7936224	7936318	AATTAATGAGCCGATCGTG		57	NA	
Drosophila melanogaster	50	CG14736	FBgn0037986	FBtr0089692,FBtr0089690	2	2	3	136	3R	7867672	7867744	ACTACAAGAGCAGGTACTG		58	7867906	7867924	GCAGGACTCTGTTTAACAC		58	NA	
Drosophila melanogaster	50	CG31211	FBgn0051211	FBtr0082480,FBtr0082479,FBtr0082481	3	3	3	247	3R	7777464	7777482	CACTAACCGAAATCCTGCT		59	7778479	7778558	TTATGCGAGCTTTCAACTC		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG31389	FBgn0051389	FBtr0082419	3	1	1	81	3R	7467517	7467535	TAATTACACGGTTAGCTGC		57	7467580	7467598	AAGGAGAAGGGTTCTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL3	FBgn0020910	FBtr0082349,FBtr0082346,FBtr0082348	3	3	5	94	3R	7048443	7049127	CAAGAACTGGTACAAGAGCA		59	7049184	7049202	GGAAGTCATTCTCGATGCT		59	NA	
Drosophila melanogaster	50	CG9386	FBgn0037708	FBtr0082115	1	1	1	60	3R	5380365	5380384	GGTCTGTTAGTTCATGTCCT		59	5380324	5380345	TTCTTATATCGTAGCCATACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rlc1	FBgn0014023	FBtr0082121	1	1	2	74	3R	5340821	5340842	CTTAAAGTACAGGGAGAAACTC		58	5340715	5340733	ATCATCATGACTTCGTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nmdmc	FBgn0010222	FBtr0081996,FBtr0081997	3	2	2	117	3R	4868664	4868682	ACCAAGGACATGGTTAAGC		59	4868498	4868583	GGCGAACTTCTTCAAAGTC		59	NA	Nonspecific
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0089782,FBtr0089781,FBtr0114459	2	3	8	82	3R	4660661	4661006	CATATACGGTACCCTACGA		57	4660597	4660615	GTAGATGCTGTACTTGCTG		57	NA	
Drosophila melanogaster	50	CG9839	FBgn0037633	FBtr0081934	3	1	1	60	3R	4630818	4630837	GACTACGATCCAGATTGGTC		59	4630777	4630795	TGGGAAATTTGAAGAGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9684	FBgn0037583	FBtr0081853	3	1	1	83	3R	4187678	4187699	CAGTAATCGTTGCTATATTCGC		59	4187390	4187637	GCTATGGTATTAACCTTCTTGC		59	NA	
Drosophila melanogaster	50	CG10435	FBgn0037539	FBtr0081820	3	1	1	89	3R	3837065	3837083	TACTATGGGTTTCCCTCTG		57	3836934	3836952	AGTGGAATAAGGTGTTCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31482	FBgn0051482	FBtr0081679	2	1	1	121	3R	2427252	2427327	TATGCTAAAGTGCTAGCCA		58	2427412	2427430	TCGTACCAGTCTTGAACAC		59	NA	
Drosophila melanogaster	50	dpr11	FBgn0053202	FBtr0081704	1	1	1	120	3R	2358447	2358465	TTCATCATGTGGTACCACG		59	2357761	2358363	TTAATGAGCCAATCGTGCT		59	NA	
Drosophila melanogaster	50	CG15580	FBgn0037398	FBtr0078622,FBtr0078621	3	2	2	93	3R	1881011	1881137	ATACCCGAATCCTATACGC		58	1880936	1880954	ATGTAGTTATTCCGACGCA		58	NA	
Drosophila melanogaster	50	Hpr1	FBgn0037382	FBtr0078667	1	1	1	169	3R	1645559	1645577	ACAACTGGAAGAACGAAGG		59	1645354	1645427	TGTTAGGTTGTCATTTCCCA		59	NA	
Drosophila melanogaster	50	cas	FBgn0004878	FBtr0078725	2	1	1	220	3R	1540441	1540459	GTCCCAAGGTGTATGTGAG		59	1540169	1540257	TTTGTGCTTGTCCATATCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1427	FBgn0037347	FBtr0078702	1	1	2	80	3R	1428647	1428720	TTCTAGGCAAATTTCGGCT		59	1428763	1428782	TCGGGTTATTCCAATTCCTG		59	NA	
Drosophila melanogaster	50	CG34277	FBgn0085306	FBtr0112472	1	1	1	60	3R	1196910	1196930	GATATCTAGCTCCAAGCAGTC		59	1196952	1196970	GAATATCCGGATGGAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31538	FBgn0051538	FBtr0078819	1	1	1	60	3R	1102672	1102690	GGAAGCATCCAAAGAACCT		59	1102630	1102648	CTACTGGTACTGCTATCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078809,FBtr0078810,FBtr0100199	2	9	15	152	3R	1119084	1119796	AAGTATTCTCAAGACGTTCCTC		59	1118953	1118971	TAAAGAGTTCCGGCTTGTC		59	NA	
Drosophila melanogaster	50	katanin-60	FBgn0040208	FBtr0078827	2	1	1	117	3R	1054550	1055438	CTACTTCAAGGGTATCCGG		58	1054451	1054469	GTTGAAGAACGTAGTTCCG		58	NA	
Drosophila melanogaster	50	Karybeta3	FBgn0011341	FBtr0078860	1	1	1	140	3R	476445	476527	TTCTACAAAGGGCTTCCAG		59	476631	476649	CTCGTCGATCAGATTCCTG		59	NA	
Drosophila melanogaster	50	CG34357	FBgn0085386	FBtr0112567	3	1	2	81	3R	320709	320727	ATGATGAACACCTTCTGGC		59	320259	320664	ACTCATCCAAGCCAATAGG		59	NA	
Drosophila melanogaster	50	CG34357	FBgn0085386	FBtr0112567	1	1	2	80	3R	321844	322205	TTCAACTCCGTGTATGAGC		59	321782	321802	GAGCATTTGGAACATAGTGTC		59	NA	
Drosophila melanogaster	50	CG31528	FBgn0051528	FBtr0078923	2	1	1	73	3R	243027	243045	CTTCTGTTAAGCAGAGCGA		59	243082	243100	TGCAGTAGAAGTCATCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-1837a	FBgn0086660	FBtr0091629	1	1	1	60	3L	5757427	5757446	TCAACACTTGCAAAGATCAG		58	5757386	5757404	AGTCCTGAATAATAGGCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14450	FBgn0037184	FBtr0078537	3	1	1	60	3L	22719988	22720006	GAGAACAAGACGAACAACG		59	22719946	22719965	GATTAAATAGTCGGGCTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DNApol-eta	FBgn0037141	FBtr0078489	3	1	1	198	3L	21933823	21933899	ACGAGAAGAATGGAACCTG		59	21933643	21933661	ATGAAGTCCTTCTCAAGGC		59	NA	
Drosophila melanogaster	50	CG7611	FBgn0037094	FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362	2	8	8	109	3L	21518809	21519094	ACCTTAAGGACCTAGAGCC		59	21519167	21519185	ATTGCCATCATCCAAATGC		59	NA	
Drosophila melanogaster	50	CG11309	FBgn0037070	FBtr0078407,FBtr0078406	3	2	2	138	3L	21297075	21297093	TCAAGTGGCACTATTACCG		59	21296625	21296643	GAACCGTAATGCTGATCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG10508	FBgn0037060	FBtr0078302,FBtr0078303,FBtr0078301	3	3	4	87	3L	21208529	21208548	CTATTATCGAACGAATGGCC		58	21208598	21208690	GTGACATAATCGGCTAGCA		59	NA	
Drosophila melanogaster	50	CG11458	FBgn0040637	FBtr0078265	3	1	1	281	3L	20898973	20898991	TCATCGGAGTGATCTTTGC		59	20899235	20899254	GGATCTTTGGTGTTTACCAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Pitslre	FBgn0016696	FBtr0078250,FBtr0078247	3	2	4	83	3L	20769141	20769282	CAGGATCTTTAAGGAATTGGGA		59	20769326	20769344	GACAACATGTTCTTCACGG		59	NA	
Drosophila melanogaster	50	CG13253	FBgn0037015	FBtr0113182,FBtr0113183	1	2	2	99	3L	20706707	20706794	TCAAGAACCTAGAGGACTG		57	20706626	20706644	TATGTGAATTTGCTCGGTG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Toll-9	FBgn0036978	FBtr0078240	1	1	1	80	3L	20357654	20357775	GATGCTGAAGACTTTGCTC		58	20357592	20357612	TAGTAGTTCACAATGGTGTGG		59	NA	
Drosophila melanogaster	50	Mi-2	FBgn0013591	FBtr0100394	3	1	2	112	3L	19903143	19903164	GAGAATGACGATAATTTCCAGG		58	19881565	19881642	TCTTCGTCGTTCTGATTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Paps	FBgn0020389	FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885	1	6	6	93	3L	19853427	19853509	TAGACAGCATGGAGATCCT		59	19853566	19853584	AACTCATCCTTCCTCTTGG		58	NA	
Drosophila melanogaster	50	CG9449	FBgn0036875	FBtr0074980,FBtr0110902	2	2	2	76	3L	19487944	19487965	TGTAAATGAGACCTACTATCCC		58	19487491	19487509	TACCAATGTTGAACAGCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Max	FBgn0017578	FBtr0075018	1	1	1	97	3L	19256254	19256272	ATGCATACAGACGATGAGG		59	19256110	19256193	GTGCTTGTATCTGCTTAGC		58	NA	Nonspecific
Drosophila melanogaster	50	CG18136	FBgn0036839	FBtr0075040	2	1	1	94	3L	18994616	18994634	TCTCCATGAGACCAATACC		58	18994484	18994558	CAGAAAGTTCCTCCATTGC		58	NA	
Drosophila melanogaster	50	CG18223	FBgn0036832	FBtr0075071	2	1	2	145	3L	18912829	18912847	TGTGATCAATCTGCCTACG		59	18912653	18912671	TCTTCTCACAGATATCCCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG18223	FBgn0036832	FBtr0075070,FBtr0075071	3	2	2	60	3L	18913252	18913271	CTTTCCAGTCCCTATTTCGA		59	18913211	18913230	TCGAGACTACATATTTGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED11	FBgn0036811	FBtr0075054	2	1	1	60	3L	18739199	18739217	TTTCTCAAGAGTCTGTCCA		57	18739241	18739259	GGGTCAAGTAGTTGATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6034	FBgn0036750	FBtr0075194	1	1	1	60	3L	17739072	17739091	CCATAAGCTCTTTGTACCAG		57	17739031	17739049	TTTGAGACCCTCTATCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	frc	FBgn0042641	FBtr0075228	3	1	1	60	3L	17425284	17425305	TGTTACAGGGAATCTAGATCAG		58	17425245	17425264	CACAAACACTGAGTCATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32169	FBgn0052169	FBtr0113428,FBtr0075285	3	2	3	82	3L	17061140	17061158	TTGATCTAACCAATGGGCA		58	17060462	17061097	CTGATAGTTGTTCATCACTGAC		58	NA	
Drosophila melanogaster	50	CG14057	FBgn0036696	FBtr0075286	1	1	1	80	3L	17037753	17037827	CCATTGATTACTTTGATCGGAG		59	17037694	17037713	CTTGTTGCATTGGATGATGG		59	NA	
Drosophila melanogaster	50	CG4098	FBgn0036648	FBtr0075361	3	1	1	171	3L	16601945	16601963	CTACAACGTGCAGAATGGA		59	16601736	16601810	GATATTCTTGCCGGTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33257	FBgn0053257	FBtr0075378	1	1	1	60	3L	16339814	16339832	GAATGGCTATCACTACCGA		58	16339856	16339874	CTCAAAGTAACCACCTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32160	FBgn0052160	FBtr0075367	1	1	1	60	3L	16303365	16303384	CAACTGTACCTTCAATGGTG		58	16303407	16303425	GACAAATCACCATAACGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dcp2	FBgn0036534	FBtr0100528,FBtr0075539,FBtr0075538	2	3	4	86	3L	15815230	15815248	GGTACTGTATCCTCGAAGC		59	15815103	15815181	GCTGACAATCTTCTCATTGC		59	NA	
Drosophila melanogaster	50	Eig71Ek	FBgn0014851	FBtr0075575	2	1	1	140	3L	15654551	15654572	GAATAGGACGATTTGATGAGAC		58	15654729	15654747	ACATATCATCACAGCGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7650	FBgn0036519	FBtr0075591	2	1	1	62	3L	15603330	15603348	CTTGAGTACTACTGCAGCA		59	15603286	15603304	CTTATTATCGCCTCCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAP71E	FBgn0036518	FBtr0075567,FBtr0075569,FBtr0075568	2	3	3	89	3L	15593709	15593797	AAGTTCAAGGTCTCTACGA		57	15593849	15593868	GTAGTACTCATAGTTGTCGC		57	NA	
Drosophila melanogaster	50	CG17081	FBgn0036480	FBtr0075638	2	1	1	120	3L	15120744	15120856	AAACATTGGATCAGTTGCAG		59	15120939	15120957	TGATTGTAGCGATCATCGG		59	NA	
Drosophila melanogaster	50	Or71a	FBgn0036474	FBtr0075659	2	1	1	81	3L	15070456	15070474	ACTTAAATCGACCGGTGAC		59	15070343	15070411	GCTTGATTCATGGTCTTGG		58	NA	
Drosophila melanogaster	50	shd	FBgn0003388	FBtr0075675,FBtr0075676	2	2	2	91	3L	14613773	14613793	TGAATATTCTGGAGCTCAAGG		59	14613845	14613921	GTTGGCTAACGTTTCTATGC		59	NA	
Drosophila melanogaster	50	CG8783	FBgn0036397	FBtr0075786,FBtr0075785	2	2	2	60	3L	13992990	13993008	GTGAAGCTGTATCAGATGG		57	13992948	13992966	AGTACATGATCTCCTCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rgl	FBgn0026376	FBtr0075796,FBtr0075794,FBtr0075793,FBtr0075795	2	4	4	102	3L	13902205	13902224	AAACTTTAGTTCGCTCAAGG		58	13902061	13902142	GACTTCCATCCTTTCTTTAGG		58	NA	
Drosophila melanogaster	50	bru-3	FBgn0036379	FBtr0075815	2	1	2	165	3L	13644687	13657528	ACAAGTTACTGTAAGTTGCC		58	13595512	13595530	TCTAACATCGTCTTCGGTC		58	NA	
Drosophila melanogaster	50	bru-3	FBgn0036379	FBtr0075816	1	1	2	80	3L	13631656	13657530	CAACAAGTTACTATGAACCGTG		59	13577352	13577370	AAATTTGACGAAAGCGCAG		59	NA	
Drosophila melanogaster	50	Vps36	FBgn0086785	FBtr0075818	2	1	1	80	3L	13505256	13505274	GACAGATTTGCGAAATGCT		59	13505136	13505156	TTACACGACAGTAGACATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32117	FBgn0052117	FBtr0075905	3	1	1	63	3L	12896342	12896361	CAGTACATAGCCATGAAACG		58	12896298	12896316	AGATCTTCGGTTTGGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10632	FBgn0036302	FBtr0114611	3	1	4	114	3L	12533237	12533498	ATGTCTACAAGGCCAATCG		59	12533141	12533160	TACTTTGCATACTCACTGCT		59	NA	
Drosophila melanogaster	50	Ncc69	FBgn0036279	FBtr0075987,FBtr0075988	1	2	2	92	3L	12363400	12363418	GACCTGTCCTTTATAGCGG		59	12363258	12363345	CGAATTGCTCACAAGATTGG		59	NA	
Drosophila melanogaster	50	CG10418	FBgn0036277	FBtr0075954	1	1	1	80	3L	12329936	12330017	AACGACCTCAGCATATGTG		59	12330060	12330079	ATCTGTGACACTGATATCCG		58	NA	
Drosophila melanogaster	50	CG17144	FBgn0036267	FBtr0076015	1	1	1	60	3L	12200715	12200733	CAATCTCTTCGATGCTGAC		58	12200673	12200691	ATGGTTATCCGCCAATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rh7	FBgn0036260	FBtr0076020	3	1	1	161	3L	12159969	12160350	TTAGGAGACATTGCCTGTC		58	12159826	12159844	GATGATCAGGTAGGATCGC		59	NA	
Drosophila melanogaster	50	CG7248	FBgn0036229	FBtr0076043	2	1	1	60	3L	11949554	11949574	GAATTTGTGCAGATAAGGCAG		59	11949596	11949614	TACTTGCTACAGTTCCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pi3K68D	FBgn0015278	FBtr0076088,FBtr0076087	1	2	3	80	3L	11769208	11769291	CGTACTTACTGTGATGATACAC		58	11769149	11769168	CACTTCACATATGTGTTGGG		58	NA	
Drosophila melanogaster	50	CG6084	FBgn0086254	FBtr0076139	2	1	2	85	3L	11614370	11614388	CTTCGAACTGACACCTGAG		59	11613755	11614322	GACCGTATTGGTTGAGTAGG		59	NA	
Drosophila melanogaster	50	CG7600	FBgn0064766	FBtr0076165	1	1	1	60	3L	11206683	11206701	TGTAGCGATGCTAATTTGG		57	11206725	11206743	GAAAGAGAACTTGTGCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)01239	FBgn0010741	FBtr0076238	1	1	1	60	3L	11067091	11067110	ACTGTGATAGAAACTCTGGA		57	11067050	11067068	CACCAATTTGACGAAAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32069	FBgn0052069	FBtr0076241	3	1	1	141	3L	11055602	11055620	TGAATCTTCACTCCTGTGC		59	11055413	11055431	ACGAATGAGGTTTAGCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aps	FBgn0036111	FBtr0076250,FBtr0076251,FBtr0076252	1	3	3	80	3L	10889924	10889944	TACGACAAGGATGGATTTAGG		59	10889710	10889882	GGTTACCAAGAGTACCTCC		58	NA	
Drosophila melanogaster	50	CG34238	FBgn0085267	FBtr0112432	1	1	1	152	3L	10619999	10620017	ATCCTAGTTGTGTTCGTGC		59	10620133	10620206	ACTCCACAATCAATCCCAC		59	NA	
Drosophila melanogaster	50	CG12362	FBgn0036082	FBtr0076282,FBtr0076281	2	2	2	60	3L	10406358	10406377	TAATGTCCTGAATTTGCCAC		58	10406397	10406418	GTCCCATTTGAAGTGATTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6718	FBgn0036053	FBtr0076362,FBtr0076363,FBtr0076365,FBtr0076364	1	4	4	102	3L	9854030	9854111	TCTCTACCATTGGCAATCTG		59	9853947	9853965	AAGTAGGGTATGCCAATCG		59	NA	
Drosophila melanogaster	50	I-2	FBgn0028429	FBtr0112935,FBtr0076370	3	2	2	72	3L	9829169	9829188	TACTAAAGACTTCGCGTAGC		59	9829048	9829066	TTCAGCTCATCGAACTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4484	FBgn0035968	FBtr0076503	2	1	1	66	3L	9196706	9196724	GTGGCTAGATATCATGCCA		58	9196598	9196619	CCTGTTTCAGTGGTACTATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dhpr	FBgn0035964	FBtr0100531,FBtr0100532,FBtr0076531	2	3	3	89	3L	9128542	9128561	CATGAACCGTAAATGGATGC		59	9128613	9128631	TCTTGGGTCCACTTAAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gug	FBgn0010825	FBtr0076619,FBtr0076618	3	2	4	81	3L	8463407	8463428	GCCAAATATGCTTATACCTAGG		58	8463467	8463539	CTGTAAATACTGTAGTTGGTCG		58	NA	
Drosophila melanogaster	50	CG7112	FBgn0035879	FBtr0113153	1	1	2	105	3L	8344384	8344402	GATAATGGTAGTGGCGGAC		59	8344471	8344876	TCTTGTACTCCTGATTGCC		58	NA	
Drosophila melanogaster	50	CG13675	FBgn0035845	FBtr0113152	3	1	1	81	3L	8154324	8154342	GATCAGAGCAACTCTACCA		58	8154174	8154280	TGTTGCTGTTGATCATTCAG		58	NA	
Drosophila melanogaster	50	bip1	FBgn0026263	FBtr0076745	3	1	1	145	3L	8048536	8048991	CATTGAACTTGTTGAGAGCC		59	8048410	8048428	GTAACGAGGCTTCGTAGTC		59	NA	
Drosophila melanogaster	50	CG10472	FBgn0035670	FBtr0077066	3	1	1	195	3L	6055555	6055574	CATTTCCCTGATCAAGTTGC		59	6054776	6054794	GTTGTTCATGATGGGAACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	spo	FBgn0003486	FBtr0077130	1	1	1	60	3L	5584356	5584375	ACACGATTATCTTCATGCTG		58	5584315	5584333	ACTAGATTTCCAACCGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7509	FBgn0035575	FBtr0073362	3	1	1	99	3L	4803911	4803986	TCGGATAAGTCATATAGATGGC		59	4803833	4803851	TAGATCAGCTGGAATGCTG		59	NA	
Drosophila melanogaster	50	CG32244	FBgn0052244	FBtr0073325,FBtr0073324	1	2	2	95	3L	4505303	4505412	AAAGTTTGAACAGGTTCGC		59	4505226	4505245	CGGGTAGAGCTCTTTATGAG		59	NA	
Drosophila melanogaster	50	Rop	FBgn0004574	FBtr0073263	2	1	1	60	3L	4138547	4138565	GCGATCTATCTGATTACGC		57	4138505	4138523	TCTCGAAGTCTCGTATCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14998	FBgn0035500	FBtr0073268,FBtr0113135	3	2	6	83	3L	4129782	4130397	ATCGTAAGGAAGATAGCGT		57	4129717	4129735	GTATTGTCGGCATAAGGTC		57	NA	
Drosophila melanogaster	50	CG14998	FBgn0035500	FBtr0073267,FBtr0073265,FBtr0073268,FBtr0113135,FBtr0073269,FBtr0073266	1	6	6	107	3L	4126918	4126996	TCTCGAGGAGATTAACAAACTC		59	4126832	4126851	GACATAAGGTTTGCAGTTCG		59	NA	
Drosophila melanogaster	50	CG32263	FBgn0052263	FBtr0073183	2	1	1	60	3L	3810540	3810558	GAAAGAGTTTCGTGGAGTG		58	3810498	3810516	AACATCCATGTGTAGAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF5B	FBgn0026259	FBtr0073144	3	1	1	88	3L	3447720	3457231	GCACATCTAAGATTCCTTACTC		58	3447653	3447671	CTCGTGTTCCAACATTGTG		59	NA	
Drosophila melanogaster	50	CG14961	FBgn0035439	FBtr0073069	1	1	1	60	3L	3331767	3331785	GTGGATGCTAATGGAAACG		58	3331809	3331827	GGATCATCTTGGGTGAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dro3	FBgn0052283	FBtr0073060	1	1	1	63	3L	3315067	3315085	GCTGTAATGACCATTGTCC		58	3315112	3315130	TTCCAGATAGGCAATCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	msn	FBgn0010909	FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956	3	5	5	102	3L	2556720	2556800	GCAATAGAGATACGTTCCG		57	2556636	2556654	ATACTTTGTCGTTTCGCTC		58	NA	
Drosophila melanogaster	50	CG32306	FBgn0052306	FBtr0072894,FBtr0072892,FBtr0072893,FBtr0072895	1	4	4	82	3L	2464050	2464068	TGAAACTACCGCAGATCAC		59	2464114	2464132	GTAGTGATCCATGGACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11814	FBgn0035296	FBtr0072855	2	1	1	80	3L	1951225	1951299	TATGGGATCTCAATGACTGG		58	1951164	1951183	CCACATGTGTTATTGGAGAC		58	NA	
Drosophila melanogaster	50	CG7991	FBgn0035260	FBtr0072765	3	1	1	177	3L	1712776	1712853	ATTAAGGGATGCCTATTGTCC		59	1712992	1713010	GATCTCCACATAGTCGGAG		58	NA	
Drosophila melanogaster	50	Ptp61F	FBgn0003138	FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718	2	4	4	144	3L	1346060	1346078	AGAAACAGATCAAGTGCCA		59	1345856	1345953	TCGGTTAATTTGAACCATCG		58	NA	
Drosophila melanogaster	50	CG33965	FBgn0053965	FBtr0100006	3	1	1	112	3L	1233636	1233710	AAATCAAGGAGAGGGTTTCC		59	1233785	1233803	GATATCCTTCATGGTGCCC		59	NA	
Drosophila melanogaster	50	CG13876	FBgn0035109	FBtr0072484	3	1	1	60	3L	206410	206429	CATTTACGTACTGCTTTCCA		58	206451	206470	GCTCAAATACGTAAAGAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR30066	FBgn0050066	FBtr0087563	2	1	1	60	2R	10177740	10177758	ATTGTTAAAGCCCGGAGAG		59	10177698	10177716	ACTGAATTGGAAACCAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4589	FBgn0019886	FBtr0072347,FBtr0072348,FBtr0072349	3	3	3	82	2R	20398309	20398389	CGATATTCGTAAGGTGTTGGA		59	20398247	20398265	GCAGACTGATGAGTTCCTC		59	NA	
Drosophila melanogaster	50	CG15874	FBgn0035004	FBtr0072356	3	1	1	85	2R	20319636	20319655	TTTAGGCGCTACTTCTTCAG		59	20319570	20319589	TAACGGATCACATTCGAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slik	FBgn0035001	FBtr0072365,FBtr0072363,FBtr0100470,FBtr0072364,FBtr0072366	1	5	5	80	2R	20287854	20287939	TTAGTCAAAGATCCGCAGG		59	20287792	20287810	CTTGGCATCCAGATTTCTG		58	NA	
Drosophila melanogaster	50	RpL12	FBgn0034968	FBtr0072174,FBtr0072175	1	2	3	144	2R	19948090	19948209	TAAATTGGTGTACCTGCGT		59	19948380	19948398	GATCTTCAGACCCTTCCAG		59	NA	
Drosophila melanogaster	50	chrw	FBgn0015372	FBtr0072120	2	1	1	117	2R	19409666	19409684	CATAAAGAACACGCTGCAC		59	19408475	19409585	AGCTGTATCCCAGATTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Fib	FBgn0003062	FBtr0071982	3	1	1	117	2R	18961145	18961163	CAATGGCGAGAAGATTGAG		58	18961046	18961064	CAGGTAGAGAACCTTCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32834	FBgn0052834	FBtr0071991	3	1	1	60	2R	18871615	18871633	ATCATCACATCAGACACCA		58	18871573	18871591	CAATTGAACCGTAGGACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vps20	FBgn0034744	FBtr0071857,FBtr0071856	1	2	2	279	2R	18496207	18496225	GATCGTCTGAAGCAGTACC		59	18496530	18496548	CGATGTCAAGCATTTCGTG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG3927	FBgn0034739	FBtr0071853	3	1	1	60	2R	18483192	18483213	CAAGTACAACAACCAGATTAGG		58	18483234	18483379	CTCCATATAGGCGACTTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Gp150	FBgn0013272	FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815	2	4	4	82	2R	18213224	18213297	AAGTCCAAGAGCAAATCCA		59	18213341	18213361	TCGTCGTAGTCATATTGAGAG		58	NA	
Drosophila melanogaster	50	wdp	FBgn0034718	FBtr0071849,FBtr0071852,FBtr0071851,FBtr0071850	1	4	4	60	2R	18187225	18187246	CCGTGGAAGAAGATAATATCGT		59	18187186	18187204	GACTCCAGACCAGTATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gom	FBgn0029084	FBtr0071766	3	1	1	196	2R	18027914	18027932	AGAATATGAAGCGGAAGCC		59	18028092	18028159	TAGACAGAGGACACCTGAC		59	NA	
Drosophila melanogaster	50	CG13502	FBgn0034692	FBtr0113103	3	1	2	66	2R	17974262	17974280	AGATCAAGAATGCCAATCC		57	17974052	17974070	GTGCTATTCAGCTCAAGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG30222	FBgn0050222	FBtr0071655,FBtr0071656	3	2	2	104	2R	17470719	17470737	CTTAGACGCTTTGATGAGC		58	17471237	17471312	ATCGAAGTCAGTGATTCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	sktl	FBgn0016984	FBtr0071563	2	1	1	60	2R	16716997	16717015	GAACCTATCGCAGAATCCT		58	16716955	16716974	GTGGAAGCAATATAGTCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mus209	FBgn0005655	FBtr0086308,FBtr0086307	3	2	2	63	2R	16149903	16149921	CAACAACGAGGACAATGTG		59	16149858	16149876	GAACATGATGGTGACAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp56g	FBgn0034474	FBtr0086343,FBtr0086342	3	2	2	85	2R	15671154	15671174	CGAACTTTAAGGATGTCATCG		59	15671089	15671108	TATCTTGAAGGCAGTGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp56c	FBgn0046879	FBtr0086479	2	1	2	60	2R	15588018	15588037	GATCTGAAGCATAATGAGCC		58	15587977	15587995	AATCCAGGGTCTCATACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086450,FBtr0100390,FBtr0100392	3	3	15	102	2R	15361465	15365132	GAGACAAATCTGTTCGATCG		58	15365197	15366252	TTTGACCAGAGTGAAAGGT		58	NA	
Drosophila melanogaster	50	CG15117	FBgn0034417	FBtr0086594,FBtr0100129,FBtr0086593	2	3	3	113	2R	15010499	15010517	AACCCAGAATGTGATCGAC		59	15010305	15010422	TAAGCAGGTTGCATATGCA		59	NA	
Drosophila melanogaster	50	CG15107	FBgn0041702	FBtr0086600	3	1	1	137	2R	14859263	14859346	ATTATCTACGAAGTCGCGG		59	14859144	14859162	GGCTATCTTAAAGTGCAGC		58	NA	
Drosophila melanogaster	50	Jheh1	FBgn0010053	FBtr0086625	1	1	1	85	2R	14742094	14742112	TTCACCACCGATATTCAGG		59	14741973	14741992	GGATAGTGTTTCTTACCCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14502	FBgn0034321	FBtr0086756,FBtr0086757	1	2	2	120	2R	14181611	14181629	GAGAATATGCCCTTTCTGG		57	14181806	14181825	AACGGCATAATCTTGTAGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6355	FBgn0028741	FBtr0089554,FBtr0089555	3	2	2	120	2R	13663153	13663233	ATCTGGTTCAGATGTCCTG		58	13663051	13663069	GAATAGTCCATGACGAGGT		58	NA	Nonspecific
Drosophila melanogaster	50	CG30108	FBgn0050108	FBtr0086837	2	1	1	62	2R	13557116	13557134	GGTTTATCAGGAATGCGTC		58	13557160	13557178	GTTGGTCAAACCATACGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG30106	FBgn0050106	FBtr0086893	3	1	1	119	2R	13538599	13538674	AAGTAACCTGAAGCATCTCG		59	13538499	13538517	TAGTAGACCAGGAAGTGCA		59	NA	
Drosophila melanogaster	50	ProsMA5	FBgn0016697	FBtr0086911,FBtr0086910	3	2	2	60	2R	13301040	13301058	CGATTTGACTCTCGATGAG		57	13301079	13301100	CTCCATAACCTGTTTAAGTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6805	FBgn0034179	FBtr0086966	3	1	1	60	2R	12893751	12893770	AGACTATCACCAAATCGTGG		59	12893793	12893811	GAATATCCGGCGATATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sema-2a	FBgn0011260	FBtr0087089,FBtr0087090,FBtr0087088	2	3	4	81	2R	12415122	12415140	GATGTGATCAACTTGGAGC		58	12415185	12416062	TCTTGCAGTCGAAGATCTG		59	NA	
Drosophila melanogaster	50	CG7813	FBgn0034133	FBtr0087126	3	1	1	60	2R	12386457	12386476	CTACCGTCAGAATGTGAGAG		59	12386416	12386434	ATACTTGGTCTCGTATCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15711	FBgn0034122	FBtr0087167	1	1	1	60	2R	12251635	12251655	CCAATCTTGAATTGGACAGAG		58	12251595	12251615	CGATCAGATAATCCTCATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33463	FBgn0053463	FBtr0087301	2	1	1	129	2R	11783487	11783579	TTGTCCGTTCAATCATGAC		58	11783376	11783394	GATGCCAGATGTAAACCAG		58	NA	
Drosophila melanogaster	50	CG30472	FBgn0050472	FBtr0087360	2	1	1	97	2R	11311076	11311094	AACGGTATTCACCACTCTC		58	11310940	11311015	CCTCCAGAGTCAATGATGG		59	NA	
Drosophila melanogaster	50	igl	FBgn0013467	FBtr0087361,FBtr0087362	3	2	2	161	2R	11068192	11068210	CTGAATTCGATCCCAACGA		59	11076379	11076398	AATCTATGTCCAACTCCTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33505	FBgn0053505	FBtr0091445	3	1	1	123	2R	10747045	10747065	CATTTGGAAGATCACAGAGGA		59	10746885	10746960	TAAACCGATTGCTCCATCC		59	NA	
Drosophila melanogaster	50	CG12869	FBgn0033943	FBtr0087496	1	1	1	163	2R	10480311	10480329	GATCCTGATTCACCTGTCG		59	10480525	10480543	ATCGTAGTTCGTTGATGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	shot	FBgn0013733	FBtr0087619,FBtr0087617,FBtr0087616,FBtr0087621	2	4	6	80	2R	9787942	9788949	AACTAGATAAACTGCTCGGAG		59	9787882	9787900	GTATAAGTCGTCCTCCAGC		59	NA	
Drosophila melanogaster	50	CG13333	FBgn0033855	FBtr0087676	3	1	1	64	2R	9443698	9443716	CAACAACTACGACAACCAC		58	9443743	9443762	AATGTTCAGGAGATCAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13331	FBgn0033850	FBtr0087672,FBtr0087673	3	2	2	97	2R	9409561	9409579	CTTCATCCTCGACTACGAG		58	9409835	9409853	GAATCTCGTAGGATTCCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17574	FBgn0033777	FBtr0113079	1	1	4	163	2R	8744204	8744222	TACTATTGCGAGTTCGTCG		59	8737633	8737651	AGTTACGTAGGCATTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13188	FBgn0033668	FBtr0088039,FBtr0088040	3	2	2	117	2R	7849671	7849689	GTCTACGTGAAGAGTACCG		59	7849770	7849894	TCATGTCGAAGAGCTTGAC		59	NA	
Drosophila melanogaster	50	CG13204	FBgn0033627	FBtr0088129,FBtr0088128	2	2	2	97	2R	7256163	7256184	GATCACATGGATTTCCTAAAGC		59	7256300	7256318	AAATCACACTCTGTGTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13213	FBgn0033609	FBtr0088180,FBtr0088178,FBtr0088179	1	3	3	80	2R	7174159	7174232	CAGGAAATTATGGACTCACCT		59	7174099	7174118	TATGATGCGGGATTCATCTG		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	1	26	26	80	2R	6421013	6421095	AGTCCCTACTTTGCTACCT		59	6420951	6420970	CTCTTGGTACTTGACATCCT		58	NA	
Drosophila melanogaster	50	Syb	FBgn0003660	FBtr0088362,FBtr0088363	3	2	2	165	2R	6138528	6138546	CAGAAGCTATCGGAACTGG		59	6138089	6138399	ACACCAGAACGATGATGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Syb	FBgn0003660	FBtr0088362	2	1	2	126	2R	6138638	6139440	AACAACGAGAACAACAATGC		59	6138531	6138549	GTTCCGATAGCTTCTGGTC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Adam	FBgn0027619	FBtr0088387	1	1	1	106	2R	5857043	5857250	GATGAGGACATCAAGGACAG		59	5857319	5857337	TTTAGCGCCTTATTTGGCT		59	NA	
Drosophila melanogaster	50	cbx	FBgn0011241	FBtr0088453,FBtr0088452	2	2	2	229	2R	5752729	5752810	TATGCTAACTCCTTGCAGTG		59	5752465	5752483	CAAAGGTGATCCTCTCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1623	FBgn0033448	FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487	3	4	4	70	2R	5716115	5716133	GAACTACGAACCCAAGACC		59	5716063	5716082	TATCCGGATACTTGTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trpl	FBgn0005614	FBtr0088471,FBtr0088472,FBtr0088473	1	3	3	81	2R	5649774	5650241	CTTCCTGTTCATCTTGATTCTG		59	5650283	5650301	CTTCTTCATCCTGGTCGTC		59	NA	
Drosophila melanogaster	50	CG13953	FBgn0033416	FBtr0088510	1	1	1	60	2R	5346217	5346235	CAGATCTTCAGTCATCTGC		57	5346257	5346277	AGGCGTCATACTTACTAACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wun	FBgn0016078	FBtr0088553,FBtr0088552	2	2	2	185	2R	5291962	5296734	TTTAATCTTGCTCTGCGCT		59	5291414	5291814	ACCTCCACGATGAATATCAC		59	NA	
Drosophila melanogaster	50	Cyp4p2	FBgn0033395	FBtr0088591	3	1	1	89	2R	5126845	5126864	CGATTCCTACCTCAGAACTG		59	5126916	5127006	GTACTTCTGGCCTATGCAG		59	NA	
Drosophila melanogaster	50	CG14744	FBgn0033324	FBtr0113056	1	1	1	106	2R	4596208	4596226	CACTCTGCGAGATCTACTG		59	4596064	4596141	TTAAGAAGAGCACTATACCCTC		58	NA	
Drosophila melanogaster	50	CG11669	FBgn0033296	FBtr0088757	3	1	1	60	2R	4358555	4358577	GTCAACAGTACTACCTACATCAG		59	4358517	4358538	GGATTTCGGTAGTTAAGATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8708	FBgn0033271	FBtr0088809,FBtr0088808	2	2	2	60	2R	4048018	4048036	GAGAATCTATGGGCCAAGG		59	4047976	4047997	CGTTATAGTGGTGATGATAGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2915	FBgn0033241	FBtr0088879,FBtr0088878	1	2	2	60	2R	3847153	3847172	CGCAATGGTTAGTCATTCTG		59	3847112	3847131	CCACTGTCCAAGTTAGTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lin19	FBgn0015509	FBtr0088845,FBtr0088847,FBtr0088848,FBtr0088846	1	4	4	93	2R	3806337	3806416	GCGAAGAGGTTCTTATCGA		59	3806473	3806491	ATCCGTTTCAGATCATCGT		58	NA	
Drosophila melanogaster	50	didum	FBgn0015933	FBtr0089745,FBtr0089743	2	2	3	117	2R	3394087	3394172	TGTATTCGATACACCGATCTG		59	3394251	3394269	TAACACGATTCTCGATCGG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111102,FBtr0111095	1	2	60	97	2R	3236476	3243204	GTGCCCTTCTATAGATGGT		58	3236397	3236415	ATGAGAGTACCAGAGACCT		58	NA	
Drosophila melanogaster	50	CG12842	FBgn0033131	FBtr0089029	1	1	1	61	2R	2927055	2927075	TATCCTTGTTATCTGTGCACC		59	2927098	2927116	CCAATGTGCACATTCAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp42Ea	FBgn0029508	FBtr0086172,FBtr0086171,FBtr0086173	1	3	3	101	2R	2884280	2884299	GTAACGATGATCATCCTGGG		59	2884363	2884444	GATCGAGTACGTCATGGAC		59	NA	
Drosophila melanogaster	50	CG15909	FBgn0033090	FBtr0086122	3	1	1	60	2R	2570869	2570887	CAAGTCAAGACTCACAGCT		59	2570911	2570929	CACGACCTCATTATAGGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17510	FBgn0039969	FBtr0086073,FBtr0086074	3	2	2	100	2R	1491755	1491774	CAAATGATCAAGTTCGCTCC		59	1491443	1491461	AAGTACTAAAGCTGCTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33347	FBgn0053347	FBtr0086090	1	1	1	92	2R	1243077	1243095	ATTTGCGTAAAGAGGACCA		59	1243151	1243169	CACAGGTGCCATAATAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gus	FBgn0026238	FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753	1	6	6	61	2R	1005304	1008282	TTGGTGGATTAGATCCCGA		59	1005261	1005279	TTGACGAATTGTTCTTCGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG41448	FBgn0084012	FBtr0111271	3	1	1	97	2R	562707	562725	ATACGTCGAGAAGTTCGAG		58	562435	562453	CTTGTAAACCTCACGTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17683	FBgn0040002	FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300	2	4	5	80	2R	19470	19547	GTGTAATCACTTCAGTTGAGG		58	19586	19607	CTAAATCAAGGAGATCGTACTG		58	NA	
Drosophila melanogaster	50	snRNA:U4:25F	FBgn0041719	FBtr0079108	3	1	1	77	2L	5565649	5565667	TGAAGTTCCAACTGAGCTG		59	5565708	5565726	GATCGTAGATCCTTACGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34137	FBgn0083973	FBtr0110947	3	1	1	60	2L	22151847	22151867	CAGTACCTAAACCTCAATTCG		58	22151889	22151907	CGTTTAATGTAACGGTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1428	FBgn0032967	FBtr0085929	2	1	1	60	2L	21906438	21906458	CAGAGTGGTTTGAAAGAAAGG		59	21906478	21906498	GTGTTCACAAAGACTACTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31619	FBgn0051619	FBtr0110959,FBtr0085901,FBtr0085902	2	3	3	118	2L	21712957	21713036	ACTTAACGAACGATCGGAG		59	21713117	21713136	CATCATCTGTATCCTGTCCC		59	NA	
Drosophila melanogaster	50	CG9248	FBgn0032923	FBtr0081470	1	1	2	173	2L	21159050	21159068	GGAGAACGCAAATAGAACC		58	21159279	21159297	TTGTACTGATGCAGTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	E2f2	FBgn0024371	FBtr0081501	3	1	1	80	2L	21154975	21155114	GTAATCATTACGAGCTGGC		58	21154913	21154931	TACTCTTTCCTTGGTTCGT		58	NA	
Drosophila melanogaster	50	Pomp	FBgn0032884	FBtr0081414	3	1	1	118	2L	20788404	20788422	AACTTCATGGACGATGTCC		59	20788504	20788522	AGAGATTTCTCCACCACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lar	FBgn0000464	FBtr0081260,FBtr0112800	1	2	2	80	2L	19729578	19729598	CGCTATCAGTATTATGTCGTG		58	19729639	19729728	ATCCGTGACCTTAAATTCAC		57	NA	
Drosophila melanogaster	50	CG10641	FBgn0032731	FBtr0081185	2	1	1	60	2L	18986734	18986752	CTACAAAGTGGTCAACGTC		58	18986692	18986710	GTCCTTGATCTGGTTACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10348	FBgn0032707	FBtr0081124	3	1	1	72	2L	18714898	18714916	CTTACCTCCAAGCTCTTCC		59	18714844	18714864	CCTTGATAGATGTTGTTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10343	FBgn0032703	FBtr0081098	3	1	1	110	2L	18703827	18703918	AATAGGAATCTACTGCCAGC		59	18703991	18704009	CTTAAGGCATTCGAACAGG		58	NA	
Drosophila melanogaster	50	Oli	FBgn0032651	FBtr0080986	2	1	1	60	2L	17590624	17590644	GTAAGGCTGAACATAAATGCC		59	17590665	17590684	CAAGGGCATCATTCAAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18563	FBgn0032639	FBtr0081003	3	1	1	60	2L	17457464	17457485	CAATACGACTGGTCTATATTCC		57	17457425	17457444	GGTCAAGTAAACTTCTTCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31804	FBgn0051804	FBtr0080967	3	1	1	61	2L	17363798	17363816	TCGAAAGCTAGTCAAGACC		59	17363841	17363859	CTTTGCTTCTGTGGTTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31806	FBgn0051806	FBtr0080952	2	1	1	82	2L	16985305	16985323	CTTAAACGAAGTCATGCCA		58	16985369	16985387	CTTCCTCAACCAGGATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ugt36Bc	FBgn0040260	FBtr0080911,FBtr0080912	2	2	2	134	2L	16800512	16800610	GTTCTATGACCGTCTTTGGA		59	16800707	16800725	ATTACTCCAGGCACATTCG		59	NA	
Drosophila melanogaster	50	CG13277	FBgn0032599	FBtr0080934	3	1	1	61	2L	16742956	16742974	AATGACGGTAAGGAGAAGC		59	16742913	16742932	TTCTCCAAGTACTTGGAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyt-c-p	FBgn0000409	FBtr0080889	2	1	1	230	2L	16722155	16722173	AATCTGCATGGTCTGATCG		59	16722367	16722385	ACAGCACCATTACTTGGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0080879,FBtr0080876	3	2	7	155	2L	16475427	16481538	AAGCCACCAGAAAGTAACTC		59	16475291	16475309	TTCATAGGCATAATCGCCG		59	NA	
Drosophila melanogaster	50	Ca-alpha1D	FBgn0001991	FBtr0090003	1	1	4	123	2L	16185512	16185530	GAGAGCTAAGGACATTCGG		59	16185614	16189033	GTGCGTAGATCATAGTTAATGG		58	NA	
Drosophila melanogaster	50	CG15256	FBgn0028880	FBtr0080751	3	1	1	136	2L	15555022	15559594	TTGCACAAGTTGATCAACG		59	15559692	15559712	TAGTTAGTCATGAGGACATCC		58	NA	
Drosophila melanogaster	50	mTTF	FBgn0028530	FBtr0080641	2	1	1	93	2L	14347586	14347660	TTACCAAGATCAAAGAGGTG		57	14347512	14347530	CTGTGGCATAGAATTCGAG		57	NA	
Drosophila melanogaster	50	CG31763	FBgn0051763	FBtr0080356	3	1	1	77	2L	12374034	12374052	ATGGCCATCAGTTGTATCC		59	12374093	12374111	CTGGAACTAAATATGGCGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14932	FBgn0032375	FBtr0080257	3	1	1	60	2L	11790650	11790668	TATCAGAGTCCATTGGAGC		58	11790692	11790710	ATGAATGGTTCCAAGTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31705	FBgn0028490	FBtr0080244,FBtr0080243,FBtr0080242	2	3	3	77	2L	11524601	11524620	AGCTGTTTACTATCCACAGG		59	11524475	11524493	AATGCTCCAGCGATAAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4705	FBgn0032339	FBtr0080196	1	1	2	117	2L	11092482	11092560	CGAGATACACGCCTATTGG		59	11092641	11092659	AAGGAACAAATAGGGTCCG		59	NA	
Drosophila melanogaster	50	Ast-C	FBgn0032336	FBtr0080234	2	1	1	67	2L	11076957	11076975	ATATTCCAATGGATCGGCT		58	11076846	11076864	CAAATAGGCGCTGTAACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6724	FBgn0032298	FBtr0080191	1	1	1	60	2L	10768644	10768665	CTCTATGATCCTAGGACAAACC		59	10768538	10768556	CATTGTGTCCCAGATAGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6737	FBgn0032294	FBtr0080120	3	1	1	65	2L	10736454	10736473	TCTTTATCGGCATGATCCTG		59	10736408	10736426	CAATGATCAGGCCGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17098	FBgn0032276	FBtr0080103	3	1	1	60	2L	10652781	10652801	GTCGCTAATAAGATACGACCT		59	10652822	10652841	AACCACTGATAGGATAACCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5375	FBgn0032221	FBtr0113033,FBtr0080058	3	2	2	174	2L	10328735	10328818	CAGATGAAAGTAAAGGCAAGG		59	10328581	10328600	ATTCCTGGAGATTGTTGACC		59	NA	
Drosophila melanogaster	50	CG31873	FBgn0032206	FBtr0079986	1	1	1	78	2L	10270370	10270388	CAACAAGAAGAGATCGGAG		57	10270484	10270502	GATCTCCACCGAATATCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4619	FBgn0032166	FBtr0079883	2	1	1	60	2L	9940281	9940299	AAAGAGTTTGATGGAGCAC		57	9940323	9940341	CGTATTTCGTCAAGTCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31878	FBgn0051878	FBtr0079881	1	1	2	97	2L	9930317	9930614	GTCTCGAGTTTACAACTCCA		59	9930787	9930805	CATATTGGGCAGGACTAGC		59	NA	
Drosophila melanogaster	50	nAcRalpha-30D	FBgn0032151	FBtr0079913	2	1	6	96	2L	9825637	9825655	GGAGGTTAAGTTCGGACTG		59	9819323	9825309	CTTCTCGTCCAAATTTAACCAC		59	NA	
Drosophila melanogaster	50	CG18854	FBgn0042174	FBtr0079919,FBtr0079920,FBtr0079918	2	3	3	81	2L	9789414	9789432	GCCTCTACTGACAGATGAC		59	9789291	9789371	AACTATTAGGCAGAGGTTTGG		59	NA	
Drosophila melanogaster	50	CG18854	FBgn0042174	FBtr0079919,FBtr0079920,FBtr0079918	1	3	3	80	2L	9789414	9789432	GCCTCTACTGACAGATGAC		59	9789292	9789371	ACTATTAGGCAGAGGTTTGG		59	NA	
Drosophila melanogaster	50	Or30a	FBgn0032096	FBtr0079770	2	1	1	81	2L	9112306	9112377	TGGTTCGGAAAGAGTTCTG		59	9112420	9112440	AATCTCGTAGTAAGGTGATGC		59	NA	
Drosophila melanogaster	50	CG9465	FBgn0032067	FBtr0079743	3	1	1	144	2L	8770527	8770545	AAGGCAACGGTAAATAAGG		57	8770338	8770420	TCACTAGTTTAACAACCGAG		57	NA	
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079620,FBtr0079621	2	2	4	90	2L	8245213	8252237	CAGATACCAGCTCCTAATGTC		59	8245143	8245161	TAATCGTATAAGCCGGAGC		59	NA	
Drosophila melanogaster	50	Pvr	FBgn0032006	FBtr0079625,FBtr0079627	3	2	6	111	2L	8228251	8228505	AGTAATGGAGAAAGCACGT		58	8228158	8228176	TGACTCGAAAGGTAAAGCC		59	NA	
Drosophila melanogaster	50	CG8372	FBgn0032000	FBtr0079634,FBtr0079633	3	2	2	62	2L	8212168	8212186	TTATTAAGACCTGGCTGCC		59	8212124	8212142	AATAGATGCCCAGAATGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34134	FBgn0083970	FBtr0110894	1	1	1	68	2L	8190457	8190475	AGTTCAATCGTCAAGGGAG		59	8190407	8190425	TATAGTGGGTGAACCTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31906	FBgn0051906	FBtr0079412	3	1	1	64	2L	7225672	7225690	AGCAGATCAACAAGGATGG		59	7225626	7225644	GACTTTAAGGGTGACTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31630	FBgn0051630	FBtr0079400	2	1	1	62	2L	7046481	7046499	CAAGAAGCTAGACTCCCTG		59	7046525	7046543	AAGGTTTGCCCATAATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	xl6	FBgn0028554	FBtr0079368	2	1	1	64	2L	6919906	6919924	GATAGAAAGGTGTACGTGG		57	6919860	6919878	AATACATACTCCAGGTCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11043	FBgn0031831	FBtr0079289	3	1	1	61	2L	6559637	6559655	TAGGTTTACAGTGGCAAGG		59	6559680	6559698	CTGAGTTGTGGATATGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11034	FBgn0031741	FBtr0079140	2	1	1	113	2L	5808398	5808478	ATGGCTGTACTATGATACGA		57	5808554	5808572	TTGAAGTTCTCCAAGTTGC		58	NA	
Drosophila melanogaster	50	CG11149	FBgn0031732	FBtr0079168,FBtr0079169	2	2	2	152	2L	5719427	5719525	AATGGTGGTATCACGTTGG		59	5719293	5719312	AAGTACACGTGAAAGGAGAC		59	NA	
Drosophila melanogaster	50	CG31650	FBgn0031673	FBtr0079034,FBtr0079035,FBtr0079033	2	3	3	88	2L	5041718	5041737	AATTTATTGACCGGCATGAG		58	5041500	5041518	TTCTTCAAATCGATCAGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	hoe1	FBgn0041150	FBtr0077395,FBtr0077398,FBtr0077397,FBtr0077399,FBtr0077400,FBtr0077396	2	6	6	106	2L	4909615	4909687	CATTCTATGGGTTTCCGCT		59	4909527	4909546	GATTCAAGGTGCTATTCTGC		58	NA	
Drosophila melanogaster	50	CG15631	FBgn0031626	FBtr0077419	1	1	1	60	2L	4732596	4732615	TGGAAGTCAGTTACACTCAG		58	4732555	4732574	CATTTCTGTCTGCATATCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34176	FBgn0085205	FBtr0112367	3	1	1	196	2L	4004181	4004199	ACCCGTGATTAAGGTACAG		58	4004359	4004377	ACTGTGGATTGTGGTAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305	2	4	10	180	2L	3626210	3634251	TATGTCATGGAAGATGGACG		59	3626049	3626067	TGATGGTCTGAAAGCACTG		59	NA	
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305	3	4	10	181	2L	3626210	3634252	TTATGTCATGGAAGATGGACG		59	3626049	3626067	TGATGGTCTGAAAGCACTG		59	NA	
Drosophila melanogaster	50	CG8852	FBgn0031548	FBtr0089937	2	1	1	60	2L	3525319	3525338	CGAATCAATATCGTTGCCAC		59	3525359	3525379	CGAAGATGTCTTATAGAGCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8851	FBgn0031546	FBtr0077526,FBtr0077527	2	2	2	60	2L	3520451	3520472	GGAACATCATCTAGTAACACCT		59	3520493	3520511	CTTCGTTCTTCTCATCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tim	FBgn0014396	FBtr0114526,FBtr0077564,FBtr0077567,FBtr0114527,FBtr0077566	2	5	8	80	2L	3500054	3500072	CCAGAATTCCGGACTACTG		59	3499755	3500010	TGAGGTTGAGTTTGTCCAG		59	NA	
Drosophila melanogaster	50	CG31698	FBgn0051698	FBtr0077612	3	1	1	60	2L	3173357	3173376	AGGGCATGAATTACAAATGC		59	3173316	3173335	AACCGTTTAGGACAATACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hrs	FBgn0031450	FBtr0089751,FBtr0089749,FBtr0089750	1	3	3	213	2L	2741450	2741468	TATCTGAACAGCACTTTGG		57	2741721	2741739	GATACTCCTTGGGTTCTGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	dpp	FBgn0000490	FBtr0077774,FBtr0077772,FBtr0077775,FBtr0077771,FBtr0077773	3	5	5	79	2L	2458417	2458435	AATATGAATCCCGGCAAGG		59	2458478	2458496	TCGTTGAGATAGAGCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9886	FBgn0031428	FBtr0077770	3	1	1	74	2L	2421849	2421867	CTATCAGAGATTGCTGCAC		57	2421905	2421923	TACTTCTCCCTGAGTTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17237	FBgn0031410	FBtr0077801	3	1	1	62	2L	2288676	2288694	GGTAGGATCAACAAAGACG		57	2288632	2288653	CCCATAGATAATGTCTTGAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10882	FBgn0031408	FBtr0077810	1	1	1	80	2L	2234288	2234306	GTGGACAAGCATGAAAGAC		59	2233969	2234247	AGTATTGTTCCGACAGTAATCC		59	NA	
Drosophila melanogaster	50	CG17652	FBgn0031361	FBtr0077904	2	1	1	166	2L	1732014	1732032	GTTAAGCTACTGACCACCC		59	1731803	1731884	CGATTGTCTTTGGTCATCG		58	NA	
Drosophila melanogaster	50	a5	FBgn0011294	FBtr0077922	2	1	1	60	2L	1329604	1329622	ATATCGGAGTACTTCGGTC		57	1329643	1329664	GAATAAGATACCGCTGAATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3662	FBgn0031285	FBtr0100469,FBtr0078012	1	2	2	98	2L	823320	823338	ATTATCGACACTACCACCG		58	823397	823418	GCTCATCTTCTTTATGAGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gsc	FBgn0010323	FBtr0114568,FBtr0078072	1	2	2	224	2L	584441	592285	AAGAACGAGTTGAGGTGTG		59	584235	584253	TCTTGATGTGCACTAGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	kis	FBgn0086902	FBtr0078144,FBtr0078145	2	2	2	106	2L	216569	216647	CTTAACAGTTCTACAATGGCG		59	216483	216501	GAAGCAGAAGAATTGCCAC		59	NA	
Drosophila melanogaster	50	CG3709	FBgn0031227	FBtr0078147	1	1	1	60	2L	154106	154126	TCTATACATCACCTCCAAGTC		58	154066	154084	CTTCTCCCGTCTTTATGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mer	FBgn0086384	FBtr0074754	1	1	1	79	X	19585952	19586067	ATGATTCTTGACCTGTGCA		59	19585891	19585909	ATCTGCTGGATTTCCATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14219	FBgn0031033	FBtr0074769	1	1	1	80	X	19482997	19483018	CTACGGTCATGACTATATGGTG		59	19482880	19482958	TAGAATGAGTTGATCCACGTC		59	NA	
Drosophila melanogaster	50	CG6961	FBgn0030959	FBtr0074660	2	1	1	237	X	18681362	18681439	TCGAGGATGAGGAAATATCTC		58	18681145	18681163	TCCTTGGTGCTATTTGAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15043	FBgn0030929	FBtr0074626	2	1	1	60	X	18387763	18387782	CAACACTTACGAATTCCCAC		59	18387722	18387740	GTTCTCCGGATAGGTAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074573,FBtr0074572,FBtr0074575,FBtr0074574,FBtr0074571,FBtr0074570	2	6	6	112	X	18285991	18286082	CACCACTCAGAATATGGCT		59	18285897	18285915	TATAGTCGCTGTTGGTCAG		58	NA	
Drosophila melanogaster	50	CG6398	FBgn0030870	FBtr0074462	1	1	1	83	X	17734949	17735029	ACCTGATGCCAGTTTACTC		59	17735076	17735094	AAGGTCCTGGGTAGATCTG		59	NA	
Drosophila melanogaster	50	CG12433	FBgn0030811	FBtr0074379	2	1	1	68	X	16917243	16917261	AACGATACGAGGATTACGA		57	16917292	16917646	TATTTCGCTCGATCTCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8958	FBgn0030725	FBtr0074207	2	1	1	80	X	15977987	15978005	GAGATTGTTTCGGAGACGT		59	15978047	15978121	AAACTTCACAACTAGACAGGG		59	NA	
Drosophila melanogaster	50	CG15599	FBgn0030667	FBtr0074061	2	1	1	80	X	15579270	15579612	CTAAATCGAGATGTGGAACAG		58	15579210	15579229	TAATAACTTCGCCAGGACTG		59	NA	
Drosophila melanogaster	50	CG8117	FBgn0030663	FBtr0074050	1	1	1	63	X	15538637	15538655	TTCAGGACTCGATCAATGC		59	15538682	15538700	TTGAACTGATCCGTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18210	FBgn0030636	FBtr0074081	1	1	1	83	X	15334555	15334573	AAAGGATGAAGGACTGCTG		59	15314733	15315620	TATTTATGCTGCGTAGCTG		57	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG14410	FBgn0030583	FBtr0073948	1	1	1	60	X	14731077	14731097	ATGAGTATCCCAATGAAGAGC		59	14731119	14731137	TGAGCGGGATTTCTAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32633	FBgn0052633	FBtr0073800	3	1	1	91	X	13456207	13456225	CTACAACTACGAGTGGCTG		59	13456280	13456298	CATACAAATACTCGCCGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15721	FBgn0030438	FBtr0073715	2	1	1	160	X	12867626	12867645	AATACAACGTTTGCAACGAC		59	12867766	12868493	CCAATCATTCTGCTTTCTGTC		59	NA	
Drosophila melanogaster	50	Sk1	FBgn0030300	FBtr0073497,FBtr0073498	3	2	2	60	X	11339337	11339355	ATCTACCTGGTGATCATCC		57	11339379	11339397	TCAGCATGAAATTGAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1637	FBgn0030245	FBtr0073407	2	1	3	82	X	10765489	10765571	AGGAGAAGTACAACTTCTCC		58	10765426	10765444	CAAGTTGAAGCTGTACCAC		58	NA	
Drosophila melanogaster	50	Aats-lys	FBgn0027084	FBtr0071367,FBtr0071366	1	2	2	70	X	9501701	9501721	CGCTATCTTGATCTCATTCTC		58	9501590	9501669	TACGAGATGATCTTGGCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10555	FBgn0030034	FBtr0071174	1	1	1	242	X	8294673	8294691	TTCAGTCCGTCATCAATCC		59	8295173	8295191	GTTGCTGTTGATAGCTGAC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG18155	FBgn0029945	FBtr0071051	2	1	1	233	X	7223254	7223355	CCGAATTGATACATAAGGATGG		58	7223632	7223650	ATGTTACATTCGAAAGCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Top3beta	FBgn0026015	FBtr0070930	2	1	1	184	X	6179392	6179475	AGTACATACAGACCAAACCG		59	6179227	6179245	ATGGTTGTAACAGTACGGG		59	NA	
Drosophila melanogaster	50	CG2861	FBgn0029728	FBtr0070732	1	1	2	130	X	4697639	4697729	ATATCCGGATCCAATTTCCA		58	4697467	4697549	CCTTGATTTCCCTATTATTCGC		59	NA	
Drosophila melanogaster	50	CG2681	FBgn0024997	FBtr0070480	2	1	1	157	X	2604927	2605016	AGGACAAGGTTCTTCATTACC		59	2605134	2605153	CGTAATGATCATGTTGGTCG		59	NA	
Drosophila melanogaster	50	deltaCOP	FBgn0028969	FBtr0070371	2	1	1	165	X	1754593	1754611	AAGGACGTCGATAGTTTCG		59	1754390	1754464	TCTTCAGATGTACGCTCTC		58	NA	
Drosophila melanogaster	50	eIF4E-7	FBgn0040368	FBtr0070252	1	1	1	60	X	1053973	1053994	CCTCAATCCACTGAAGATACTC		59	1053934	1053953	TGTTTGGATCATTCATCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16989	FBgn0025621	FBtr0070140	3	1	1	60	X	689438	689456	GGATCTTGGATTTGTGGAG		57	689478	689498	CTGGGAATCACCTAAGATACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	su(s)	FBgn0003575	FBtr0070120	2	1	1	109	X	532744	532824	CCATTAGAAGATGACCATGCT		59	532894	532913	GTATCCTGGTTAGACGAACG		59	NA	
Drosophila melanogaster	50	CG40856	FBgn0085526	FBtr0113939	1	1	1	73	U	9226990	9227008	CGACGTTGAATTATCCGTC		58	9227045	9227063	ATAAATCTACCGCTGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40968	FBgn0085546	FBtr0113959	2	1	1	180	U	6307508	6307641	AATTAATCCCGAAAGCGAG		57	6307785	6307803	TTGTTCTAGGGCATTAAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17691	FBgn0039993	FBtr0113759,FBtr0113758,FBtr0113761	2	3	4	72	U	1179199	1179274	CGGTGTTCAGTAAATCTACG		58	1179309	1179327	TTCCTTGCTCACATAAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41053	FBgn0069960	FBtr0113978	3	1	1	60	U	641286	641306	GTTGACCAGTGGATAAATGAG		58	641246	641264	CCGTACTACTTGTTGAACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pncr013:4	FBgn0041005	FBtr0091952	2	1	1	136	4	488184	488204	GTTCTAGTCGAGTATTCACAC		57	488301	488377	GACATATACCCAACACATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syt7	FBgn0039900	FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0089139,FBtr0114475	1	6	6	112	4	302426	302444	CTCCTCCCTTTGCTATCAC		59	301146	302352	ACACCTTTACGTATGGATCAG		59	NA	
Drosophila melanogaster	50	CG34347	FBgn0085376	FBtr0112556	1	1	1	80	3R	27186210	27186229	TACGAATGGTAGTGGATCTG		58	27186270	27186403	GTGCTTTGATAGTAAAGTCCC		58	NA	
Drosophila melanogaster	50	bnk	FBgn0004389	FBtr0085754	1	1	1	166	3R	27019409	27019427	GTCCAAGCGAAATAATGGC		59	27019557	27019575	ACTCAAAGGTGTTGGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31012	FBgn0027598	FBtr0085704,FBtr0085706,FBtr0085707,FBtr0085705	1	4	4	135	3R	26650595	26650683	AGTTCCTATGACTGGTAACCT		59	26650778	26650798	TTCAGGTAGTTGATTAGCACC		59	NA	
Drosophila melanogaster	50	CG18404	FBgn0039761	FBtr0085618	3	1	1	91	3R	26079306	26079393	GATTTGGCTAATGCCATTACC		59	26079502	26079523	GCTATAATAGAAGCACCATTGG		58	NA	
Drosophila melanogaster	50	RpS7	FBgn0039757	FBtr0089423,FBtr0089425,FBtr0089422	2	3	4	90	3R	26032436	26033825	TTGAACACAAAGTCGACAC		58	26032364	26032382	ACATTCAGGTAGTTGTCGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG31427	FBgn0051427	FBtr0113407,FBtr0113406	1	2	2	112	3R	25065062	25065137	GGCAAAGATGATTTCCTTCC		59	25064969	25064987	TTGCGAATACCTTCCTTGG		59	NA	InUTR
Drosophila melanogaster	50	CG13978	FBgn0039518	FBtr0085182	2	1	1	103	3R	23290662	23290680	GCGTGGTATTAGGAATACG		57	23290744	23290815	GTGCTCCTTCATTATTCATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11902	FBgn0028647	FBtr0084831	3	1	1	80	3R	21161709	21161728	AAGTCGTATCATCTACGTCG		59	21161769	21161840	TTCAGATGGCTTACATTCCTC		59	NA	
Drosophila melanogaster	50	CG10559	FBgn0039323	FBtr0084854	2	1	1	96	3R	21140548	21140664	AATATGGACGAGTTGTGCT		58	21140470	21140490	ATAGCCAACTTTAGACCATCG		59	NA	
Drosophila melanogaster	50	CG31300	FBgn0051300	FBtr0084824	2	1	1	117	3R	21110521	21110540	AAACTCTGGGATGAAATCCA		58	21110690	21110708	CCTGTATAAGGTCGTTCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6980	FBgn0039228	FBtr0084698	2	1	1	82	3R	20633974	20634065	TGTGCTACATCAAGCTACAG		59	20634110	20634128	GAGATTACTCTCCTGCAGC		59	NA	
Drosophila melanogaster	50	Gdh	FBgn0001098	FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498	3	4	4	98	3R	19763339	19763461	AAGCTAAGATCATTGCCGA		59	19763259	19763277	TGTACAGATCGGGAATGAC		58	NA	
Drosophila melanogaster	50	CG18754	FBgn0042106	FBtr0084439	3	1	1	285	3R	19510411	19510905	AATCGGCTATCCTTGATTCG		59	19511217	19511236	CCAATAGACAAATGGGTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10170	FBgn0039085	FBtr0084420	1	1	1	80	3R	19360113	19360190	GTCCAGGAAATGATCGAGG		59	19360051	19360069	CATTGACACAACCATCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	EloA	FBgn0039066	FBtr0084375,FBtr0084374	2	2	2	87	3R	19079414	19079489	GATGCATTGGAGTATACGG		57	19079540	19079558	CAAAGTTAAGCAGCTGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17141	FBgn0039020	FBtr0084322	3	1	1	60	3R	18572546	18572567	CATTAAGGATGATGAAATGGGC		59	18572507	18572525	AATATGATCGGGAAGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15497	FBgn0038894	FBtr0084113	3	1	1	117	3R	17491845	17491982	CTCTACGATTACAGTCAAACCA		59	17492060	17492078	GCAAGTTCTCAATGTGCAG		59	NA	
Drosophila melanogaster	50	cic	FBgn0028386	FBtr0112787,FBtr0083872	3	2	2	102	3R	16124247	16124328	CTCATCCGTATACGTTGCT		59	16124394	16124412	TTCCTCAAGGTGTAACCTC		58	NA	
Drosophila melanogaster	50	CG11779	FBgn0038683	FBtr0100548	2	1	4	219	3R	14981029	14981047	GATTATCACGTTCCAAGCC		58	14975339	14977213	AATCGTCGGAAGTATCCTC		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG18598	FBgn0038589	FBtr0083569	3	1	1	120	3R	14076898	14076917	AGGTTTGGACAACTACAAGG		59	14077000	14077083	CTTGTCCTTTAGCAGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17802	FBgn0038549	FBtr0083526	1	1	1	107	3R	13629369	13629587	GTAACTTCCACTGTGAGGTC		59	13629281	13629299	TAGCACTCATTGCGATCAG		59	NA	
Drosophila melanogaster	50	beat-IIa	FBgn0038498	FBtr0083453	1	1	1	129	3R	13153083	13156752	ATGCAAGTTGTTGAACTGC		59	13152972	13152990	TAAATGTGAGTTCTGCCCG		59	NA	
Drosophila melanogaster	50	CG14891	FBgn0038445	FBtr0083302,FBtr0083301	3	2	2	60	3R	12397906	12397924	AATTTCTGTCAGCCTAGCC		59	12397947	12397966	ATTAATCAACCCATTGGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rdx	FBgn0086364	FBtr0082872,FBtr0082871,FBtr0082874,FBtr0100852,FBtr0100361	2	5	5	91	3R	9796061	9796079	AAATCAGAAGTCAGAGCCA		58	9795915	9796006	AAACGATAAGCTCTTTGGG		57	NA	
Drosophila melanogaster	50	primo-2	FBgn0040076	FBtr0091746,FBtr0091745	1	2	2	150	3R	9537064	9537082	ATTCGACTACATCTTCGCC		59	9536741	9536953	ACCAATGTCATAATAGGGATCC		59	NA	Nonspecific
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082801,FBtr0082806	2	2	8	98	3R	9488126	9488710	AATCATCCTCTCGTTATGGC		59	9488770	9491190	TGTAATCCTTGAGATCCTGC		59	NA	
Drosophila melanogaster	50	Hrb87F	FBgn0004237	FBtr0082852,FBtr0082851	2	2	2	160	3R	9484012	9484197	CGTTACTAGACAAGGTAAACAC		58	9483873	9483891	GTTCTGATCTTGTCTGCCT		59	NA	InUTR
Drosophila melanogaster	50	CtBP	FBgn0020496	FBtr0082701,FBtr0082702,FBtr0082699,FBtr0082700,FBtr0100161	1	5	5	80	3R	8845522	8845621	GAAATACACGAGAAGGTCC		57	8845665	8845683	CTCAAGATCCTCCTTTGTC		57	NA	
Drosophila melanogaster	50	Cyp304a1	FBgn0038095	FBtr0082691	2	1	1	150	3R	8789869	8789889	CGAGATCCTCAATAATCAGGT		59	8790291	8790309	GTCTCTTAAGTAGCGCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Octbeta3R	FBgn0053959	FBtr0099995,FBtr0099997,FBtr0099998,FBtr0099996,FBtr0099999	2	5	5	80	3R	8338734	8338872	TTTCTGTGGTATGTCATCAC		57	8338673	8338691	GATCCAGAATAACACCACC		57	NA	
Drosophila melanogaster	50	CG14710	FBgn0037920	FBtr0082415	3	1	1	94	3R	7446856	7446936	CCACCAATGCGAAATATGC		59	7446994	7447012	TACACTTGTATGGACGGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Irbp	FBgn0011774	FBtr0082385	3	1	1	77	3R	7236527	7236790	CAAGAGCTATCGAACTGGA		58	7236831	7236849	TCAACTTACGATCGGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4683	FBgn0037857	FBtr0082326	1	1	1	80	3R	6776475	6776493	AGATCCTGGTAGTGTATCC		57	6776537	6776609	GTCATCTTCGATATTGCGT		57	NA	
Drosophila melanogaster	50	CG14684	FBgn0037824	FBtr0082268	1	1	1	60	3R	6532762	6532780	AATTTATTCTGCGCACTGC		59	6532804	6532822	TTATACTGCTCTCGCAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6325	FBgn0037814	FBtr0082260	1	1	1	80	3R	6230154	6230173	CAAAGAAGCTAAGAAGACGC		59	6230029	6230111	GTGATATGCAGTCGTCCTC		59	NA	
Drosophila melanogaster	50	CG9471	FBgn0037749	FBtr0113211	2	1	2	80	3R	5597058	5597076	TATTATTGGAGGAACCGGC		59	5596941	5596960	TATAGCAATTTCACCGACAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31415	FBgn0051415	FBtr0082127	1	1	1	175	3R	5569842	5569860	CAACAACCCTGATTCTTGC		59	5569999	5570017	CCTTACCGCATTTATTGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Scm	FBgn0003334	FBtr0082102	1	1	1	80	3R	5460307	5460325	GGTGATCCAGTACATCGAG		59	5460184	5460263	TTACCATCGATTTCGTGCT		59	NA	
Drosophila melanogaster	50	RpL34b	FBgn0037686	FBtr0082050	1	1	2	94	3R	5226835	5226853	ATATACCACCAAATGCAGC		57	5226759	5226777	GATTCGTGGGTTACATGTG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG8202	FBgn0037622	FBtr0081914	1	1	1	80	3R	4558373	4558391	GAAGCTATCGCTGTCTACC		59	4558435	4558503	ACCGTTTGTGCTTTAATGC		59	NA	
Drosophila melanogaster	50	CG18744	FBgn0042101	FBtr0114516	2	1	1	60	3R	3623019	3623100	ATCTTTGGCTTCGAATTTCC		58	3622978	3622997	GGTCTTATTCAGATTGGTGG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG18746	FBgn0042103	FBtr0081775	1	1	1	84	3R	3615385	3615467	CTAGTTCCAGCATAGAGGTG		59	3615320	3615338	GAAGAGGGACATGTGATGG		59	NA	
Drosophila melanogaster	50	Alh	FBgn0037471	FBtr0113200	3	1	6	152	3R	2926907	2926926	TATGAGAAACAGACGACACG		59	2926183	2926201	ATGGCTATTGTGATGGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ccp84Af	FBgn0004778	FBtr0081695	2	1	1	234	3R	2515824	2515900	CAAGTTCTTCGCTGTTCTC		58	2515608	2515626	CTCAACCTGACTCTTCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10999	FBgn0037381	FBtr0078635,FBtr0078634	3	2	3	232	3R	1643579	1643597	TAACAATAAGTTCGCCACG		58	1643876	1643895	TAACTGGTGATTTGGGTTCC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Mes2	FBgn0037207	FBtr0078563,FBtr0078561	1	2	3	62	3L	22939655	22943634	TCATCAGAGAACGAAAGGG		58	22943660	22943678	TATGGCCATAGGTTGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	TyrR	FBgn0004514	FBtr0078479	3	1	1	160	3L	22056139	22056786	AAGGTTGCATACAGGTCTG		59	22056908	22056928	CGAGATCTTCTGTTTCTCCTC		59	NA	
Drosophila melanogaster	50	CG14562	FBgn0037142	FBtr0078472	2	1	1	149	3L	21939204	21939899	GGATTTCTCAATACGTTCAAGC		59	21940008	21940027	GATAGCTCAAGTGGGATCAC		59	NA	
Drosophila melanogaster	50	CG14573	FBgn0037125	FBtr0078433	2	1	1	165	3L	21727440	21727458	GGATGTGGATACAGATGCC		59	21727587	21727605	CAACTTGCCCAATCTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7324	FBgn0037074	FBtr0078404	2	1	1	81	3L	21331902	21331979	CAAAGGGCTTATGAGAATCTC		58	21331841	21331859	TTAGCTGGGTAAAGCTCTC		58	NA	
Drosophila melanogaster	50	Cpr78Cc	FBgn0037069	FBtr0078338	3	1	1	152	3L	21293724	21293812	TTTAAGCTATCGCTCTGCC		59	21293928	21293946	AATACCATTGCTGGTCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10581	FBgn0037046	FBtr0078326	2	1	1	60	3L	21026775	21026793	CCGAGAAATCAACATTGGC		59	21026733	21026753	TAAATCTTGGATCCTGCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12983	FBgn0037040	FBtr0114616	1	1	4	95	3L	20959293	20959313	AACCATAGAAAGGGTACAGAG		58	20958845	20959236	TTACGGGTAGCCTTATCCA		59	NA	
Drosophila melanogaster	50	CG3634	FBgn0037026	FBtr0078272	2	1	1	60	3L	20801973	20801991	GATCCTGATCTTTGAGTGG		57	20801866	20801952	GACTTGCTCTATAAACGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17637	FBgn0037004	FBtr0078207	2	1	1	60	3L	20497989	20498008	TAAATGGAGAAGGAAAGGTG		57	20498029	20498049	GTGACTATATTCTGTGAGGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5618	FBgn0036975	FBtr0078179,FBtr0078180	1	2	2	84	3L	20349366	20349448	AGTCGACTTTACACTGTGG		59	20349495	20349514	CTTTAAGAGGCGAGTAACCA		59	NA	
Drosophila melanogaster	50	scaf6	FBgn0053522	FBtr0091474	1	1	2	111	3L	17030124	17030195	GAGATGTACAAGGGAGTGG		59	17030031	17030049	CCTAACTCTTGTCGTCTCG		59	NA	
Drosophila melanogaster	50	CG18217	FBgn0036646	FBtr0089730	2	1	1	133	3L	16594833	16594851	GATAGAAACCTCGGTGTCC		59	16594535	16594677	CAATCCGATCTTTCTGATTCG		59	NA	
Drosophila melanogaster	50	CG4229	FBgn0036639	FBtr0075392	2	1	1	74	3L	16550912	16550930	GATGGCTACCAGTATCGTG		59	16550968	16550986	AAACGTTAGCAAATCGCTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG33257	FBgn0053257	FBtr0075378	3	1	1	60	3L	16339814	16339832	GAATGGCTATCACTACCGA		58	16339855	16339874	CTCAAAGTAACCACCTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13038	FBgn0040795	FBtr0075429	2	1	1	183	3L	16320658	16320677	TTAGTTTACATGGCTCTGGT		58	16320494	16320512	TGTGAAAGGTTCGATTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Zn72D	FBgn0017453	FBtr0075493,FBtr0075494	1	2	2	286	3L	16104977	16105111	ATAGGACAGCTAATCGCAC		59	16104709	16104727	ATAGAATGTCTTGGTGGCG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Z600	FBgn0004052	FBtr0075549	3	1	1	116	3L	15502344	15502362	AAGTATTCCCTGGTACCAG		57	15502442	15502460	CTTATCAGCCTCGTAAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7275	FBgn0036500	FBtr0075547	2	1	1	96	3L	15492986	15493062	GAGGATTGCAACCTTTATACC		58	15493120	15493138	AGTAGTCAACATCGGTGAC		59	NA	
Drosophila melanogaster	50	stwl	FBgn0003459	FBtr0075728	2	1	1	60	3L	14398367	14398386	CTAATATACCCACAACCACC		57	14398326	14398344	TGGGTTATACTCTTTCCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Meics	FBgn0025874	FBtr0075791	1	1	1	60	3L	13956464	13956482	GCGACCCTTTAAATGTGAG		58	13956422	13956442	GGTAATCAAATGCTGGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10724	FBgn0036357	FBtr0075845,FBtr0075846	1	2	2	61	3L	13409019	13409104	TCATCAAGAATGCCCATCC		59	13409129	13409147	AGTGTTATTGTCCAGCCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11263	FBgn0036330	FBtr0075873	3	1	1	60	3L	13000062	13000081	AAACATTCGTTACCCTTTCG		58	13000104	13000122	TCGATCTAGTTGCTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17152	FBgn0036250	FBtr0076026	2	1	1	60	3L	12118931	12118950	CACCTACATCCTACCAAGAG		58	12118890	12118908	GCCACTGTACAGAGATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ufd1-like	FBgn0036136	FBtr0076223	2	1	1	67	3L	11115948	11116023	GATTATTATGCCTCCCTCG		57	11115899	11115917	TGAACAGCATTGGATACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34455	FBgn0085484	FBtr0112761	1	1	1	97	3L	9354002	9354020	CAAGACCTTTAAGGGTCCC		59	9354147	9354165	AGAGGTGTGAGTACAATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32033	FBgn0052033	FBtr0076509	1	1	1	86	3L	8941283	8941301	TACGAATCCGAAATCGGAC		59	8941351	8941369	GGCCAAATTAGTGGAACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13308	FBgn0035932	FBtr0076581	3	1	1	61	3L	8801828	8801847	ATTATTGCACCGCAAATGAC		59	8801870	8801889	ACCTATACAGGATCTTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7546	FBgn0035793	FBtr0076792,FBtr0076791	3	2	2	104	3L	7504633	7504651	ACCAAATAGCCGAGAAGAC		59	7504716	7504813	CATCCACATCATATTCCTTCAC		58	NA	
Drosophila melanogaster	50	smid	FBgn0016983	FBtr0076851,FBtr0076850	2	2	2	81	3L	7378360	7378440	TCAGTTAACGAACAGGACC		59	7378482	7378503	TATCATTTAGAGTGGGTACCCT		59	NA	
Drosophila melanogaster	50	SMSr	FBgn0052380	FBtr0076870,FBtr0076871	1	2	2	108	3L	7368206	7368288	AATAACAGGGCTCTCATGC		59	7368116	7368135	TATCGTATTCATTGGGCACC		59	NA	
Drosophila melanogaster	50	CG8519	FBgn0035711	FBtr0076942	1	1	1	106	3L	6701487	6701507	GAGTACGATCATCAGACTGAG		59	6701575	6701653	TATTCGTCTTCAGCCTTGG		59	NA	
Drosophila melanogaster	50	Lcp65Ac	FBgn0020642	FBtr0076991	1	1	1	207	3L	6137934	6137952	AAGTAACGTTGACTAGCCG		59	6138123	6138211	AAAGCAAAGTTGTAGCCCT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG34047	FBgn0054047	FBtr0100102	1	1	1	73	3L	5099420	5099545	CAGCTAACTTATCTTGTGGTC		58	5099367	5099386	GAGTAACATTAGAGATGCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13722	FBgn0035553	FBtr0073329	3	1	1	75	3L	4487529	4487549	TAAGCCAGAGCTACTTTACTG		59	4487417	4487435	GAATACCCATCGGTGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14969	FBgn0035440	FBtr0073082	3	1	1	128	3L	3334080	3334100	GCTAGTTCGGATTTAGTTTGC		59	3333914	3333990	AGTCCGGTTCATATTGTCC		59	NA	
Drosophila melanogaster	50	CG15879	FBgn0035309	FBtr0072916	2	1	1	62	3L	2168764	2168955	TTTCAAGGAGGTTAGAATACCG		59	2168723	2168741	CGATTACCATACCAACGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	metl	FBgn0035247	FBtr0072813,FBtr0072814	2	2	2	121	3L	1638854	1639059	CTTCAAGCACAATGCTTGG		59	1638751	1638769	TCTGAAATCGCTCCTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7955	FBgn0035244	FBtr0072754,FBtr0072756,FBtr0072755	1	3	3	91	3L	1622656	1622740	CACCGAGCATAACATTCTG		58	1622795	1622813	CATCCTTGACTGTCGAGAG		59	NA	
Drosophila melanogaster	50	CG17180	FBgn0035140	FBtr0072550	1	1	1	148	3L	541363	541383	ACTCGAATAGCAACTCTAAGG		59	541549	541567	CAACTTGGCCTCTAGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34263	FBgn0085292	FBtr0112458	3	1	1	128	3L	265789	265809	GCTATTACCAATTGTGATCCG		59	265625	265700	GTAATCCGGTTTCCAATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Atf-2	FBgn0050420	FBtr0072381,FBtr0100299	2	2	3	60	2R	20757924	20757942	ACTCATCAAGAACTGCGAC		59	20757966	20757984	AAATGGATTTACGTGCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30421	FBgn0050421	FBtr0072369	3	1	1	114	2R	20642637	20642715	ATAAGGCGAAAGGTACTGC		59	20642792	20642811	AAACTGGTGTCTACATCTGC		59	NA	
Drosophila melanogaster	50	CG30172	FBgn0050172	FBtr0072193	2	1	1	78	2R	19918531	19918549	AGATTATGTGCATCCTGGG		59	19918345	19918363	GTTATAACTTCTGGCAGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3105	FBgn0034950	FBtr0072160	3	1	1	81	2R	19879127	19879205	CGTTAATGAAGCCAAGCAC		59	19879250	19879268	CTCGTGGTTACTCACTGAG		59	NA	
Drosophila melanogaster	50	CG13566	FBgn0034942	FBtr0072206	1	1	1	80	2R	19849568	19849586	AAACTATGGCACCTGTGAG		59	19849452	19849528	GTGAAGAATATCAGTAGTCCCTC		59	NA	
Drosophila melanogaster	50	Or59c	FBgn0034866	FBtr0072020	2	1	1	60	2R	19360292	19360365	TCGAACCATCATACAGTGC		59	19360250	19360268	GGCAAAGATAGTGATCGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13545	FBgn0034828	FBtr0071972	3	1	1	256	2R	19045543	19045617	GCTTTGGCCCTATTAATCC		58	19045305	19045324	ATAGGATGAGGAGTAGACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp58c	FBgn0034769	FBtr0071920	1	1	1	62	2R	18593641	18593719	AGCGAAGAGAATACCTCCA		59	18593597	18593616	GAATTGCTTGGACATTTGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11474	FBgn0034688	FBtr0071801	3	1	2	127	2R	17960555	17960717	AGAGCTTTGCCTACTACAC		58	17960376	17960465	TTGTTCAATATCGGTACCCA		58	NA	
Drosophila melanogaster	50	CG4372	FBgn0034665	FBtr0071738	1	1	1	60	2R	17726166	17726184	GATCAAATTGTTCGGCACC		59	17726124	17726144	GTTCCACGTACTTATCAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	EfSec	FBgn0034627	FBtr0071608	2	1	1	80	2R	17273458	17273476	TTACCTCAAGGAGAACAGC		58	17273339	17273414	ACCTCCTATAATAGTGCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pu	FBgn0003162	FBtr0071578,FBtr0071580,FBtr0071579	2	3	3	82	2R	17069022	17069040	CTTCTACGGCAAAGTTTCC		58	17069086	17069163	ATATTTCGACAATGCGTGC		59	NA	
Drosophila melanogaster	50	CG3221	FBgn0034569	FBtr0071550	2	1	1	68	2R	16880287	16880305	TGCTGTTCAGGATCAACTG		59	16880178	16880196	GAATCATAGACAAACGGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15227	FBgn0034554	FBtr0071514	2	1	1	60	2R	16753878	16753896	GTACTACGAGGATCTTCCG		58	16753920	16753938	CATGATCACAGTGTTTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15905	FBgn0034462	FBtr0086491	2	1	1	69	2R	15534909	15534927	CGTTAGCATCAAGGATGTG		58	15534770	15534876	ATCGTTATACGTCTCCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10737	FBgn0034420	FBtr0086587,FBtr0086588,FBtr0086585,FBtr0086586,FBtr0100282	3	5	5	154	2R	15061509	15061527	AAATGGAGCAGATCTAGCG		59	15061861	15062091	TCAACTCGACCTTAAATGCA		59	NA	
Drosophila melanogaster	50	CG15116	FBgn0034415	FBtr0086596	3	1	1	70	2R	14943244	14943262	GTGCAACTCGATACATTCG		58	14943139	14943210	AAAGTAAGTCCGCATTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34196	FBgn0085225	FBtr0112389	2	1	1	64	2R	13997584	13997602	TTCCCATGGACTATGACAC		58	13997630	13997648	AAAGGCTCGAAATAAGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sub	FBgn0003545	FBtr0086881	1	1	1	65	2R	13633611	13633687	TTATGCTTTCCTCTCAACG		57	13633564	13633584	CCTCTATCTCATCTTTGAGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	eIF3-S9	FBgn0034237	FBtr0086942,FBtr0086941	3	2	2	82	2R	13424493	13424512	CAATCTCTTCACCGATTTCC		58	13424615	13424633	TCTGCACTTTGAAGGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ef1beta	FBgn0028737	FBtr0087041	2	1	1	133	2R	12755780	12755798	GTTAAACGCGAATTTACCC		57	12755895	12756012	CCTTGCTGGGAGTATATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sli	FBgn0003425	FBtr0087303,FBtr0112832	3	2	5	113	2R	11773665	11773756	CGAATGCTCCAACTAACTG		58	11773128	11773146	AGGAATTGCCTTTAGTCGA		58	NA	
Drosophila melanogaster	50	Ranbp11	FBgn0053139	FBtr0087278	2	1	1	60	2R	11571155	11571173	GCGCTATGAACTGAAAGTG		59	11571197	11571215	CAATTCGGTGAGTATCGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10253	FBgn0033983	FBtr0087428	1	1	1	87	2R	10818717	10818735	AAAGTTTCAGGGATTTCCG		57	10818288	10818667	TCCAAAGTCCCTAATGTAGG		58	NA	
Drosophila melanogaster	50	CG33506	FBgn0053506	FBtr0091446	1	1	1	93	2R	10745457	10745475	ATGGTTTACACCATGGGTC		59	10745320	10745338	GACCCAGAATGCTGTAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18327	FBgn0033904	FBtr0087522	3	1	1	149	2R	10054926	10054944	TGAGCATATACACCCATGC		59	10055057	10055184	GAAGTTGCGTCTTGATCAG		58	NA	
Drosophila melanogaster	50	AttC	FBgn0041579	FBtr0087653	3	1	1	97	2R	9281504	9281522	TTATTGGACAAGTGTTCGC		58	9281582	9281664	GTGTCCATGATTGTTGTAGC		59	NA	
Drosophila melanogaster	50	CG8778	FBgn0033761	FBtr0087880	2	1	1	60	2R	8539835	8539854	TGTTGCATCACGTAATTTGG		59	8539794	8539812	CACGAGAACTTCAGTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13176	FBgn0033692	FBtr0087989	3	1	1	60	2R	8069064	8069082	CAGTTCGGTGATTTACCAG		58	8069103	8069124	GCACTATTATATCCTGCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wal	FBgn0010516	FBtr0088082,FBtr0088083	3	2	2	122	2R	7578026	7578044	GGTACTCAATCCGATCACC		59	7577365	7577383	CCATCCACCTTGGAAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34054	FBgn0054054	FBtr0100109	1	1	1	87	2R	7297500	7297602	TAATACTTGCTGGCCAGTC		59	7297431	7297449	GAGCTTACTACATTCGGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	etaTry	FBgn0011554	FBtr0088163	3	1	1	61	2R	7228564	7228584	CACTATGGATAACGACATTGC		59	7228523	7228541	TAAAGCTATCCAAGGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	micr	FBgn0033522	FBtr0100460,FBtr0088262,FBtr0088263	1	3	3	81	2R	6321604	6321680	GAGCTGACATTGAGAACGT		59	6321724	6321743	GACTGTATCACTGACGTCTG		59	NA	
Drosophila melanogaster	50	Hr46	FBgn0000448	FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367	3	4	4	111	2R	6095623	6095704	CAATTTCCGCGATATTTCCA		58	6095531	6095550	CGAATCTATCGAGAACAGCT		59	NA	
Drosophila melanogaster	50	Jra	FBgn0001291	FBtr0088410	2	1	2	182	2R	5984066	5984084	ATAATGGATCCGTCTGGAC		58	5984638	5984760	CAATGACGTCAATCAGTGG		58	NA	InUTR
Drosophila melanogaster	50	RpL31	FBgn0025286	FBtr0088526,FBtr0088527,FBtr0088525	3	3	3	114	2R	5475178	5475196	GTCTGAACAAGCACATCTG		58	5475344	5475362	TAAGTGTACAGCTTGTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1814	FBgn0033426	FBtr0088523,FBtr0088521,FBtr0088522	1	3	3	80	2R	5468497	5468576	AATCTACTACGAGGGTTCG		58	5468620	5468638	TGATCTCCGAAATAGAGCA		57	NA	
Drosophila melanogaster	50	Not1	FBgn0085436	FBtr0112674,FBtr0112672,FBtr0112673	2	3	3	83	2R	5460477	5460495	AGCAATACGATTCCTTCGG		59	5460278	5460432	GGGCATATTACCTAACATGGA		59	NA	
Drosophila melanogaster	50	Pkn	FBgn0020621	FBtr0112897,FBtr0088603,FBtr0088605,FBtr0088602,FBtr0088604,FBtr0088601	1	6	6	100	2R	5141851	5141870	GGAGGATGTTAAGAAACAGG		57	5141703	5141788	CCAAGTGGTTAATTGTCGG		58	NA	
Drosophila melanogaster	50	CG8029	FBgn0033393	FBtr0088587,FBtr0088588	3	2	2	75	2R	5095833	5095923	CAGTCTGGAGTCACATGAC		59	5095962	5095980	CAGGTACAGATAAGCCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8734	FBgn0033315	FBtr0088728	1	1	1	60	2R	4515044	4515064	CTTTCTTCACAGCCATAACTG		59	4515004	4515023	GAGCTGAGTATCTTTGTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8712	FBgn0033258	FBtr0088823,FBtr0088822	1	2	2	61	2R	3985320	3985340	CTCCAAGTCTATAAGTTCAGC		57	3985279	3985297	GCTGTGATACCTCATTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1603	FBgn0033185	FBtr0088979	2	1	1	70	2R	3402667	3402742	GACTTGACTGCAATTAAGCT		58	3402616	3402636	GCATAGGTCTCTATGAATGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG1621	FBgn0033182	FBtr0088984	2	1	1	60	2R	3379005	3379026	ATAAGAGATTTAAGTCGGAGCC		59	3378966	3378984	AAGTCATCGTCATCCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spn43Ad	FBgn0044011	FBtr0089053	3	1	1	190	2R	3041673	3041691	ACTATTCACATCGGAGGTC		58	3041444	3041462	AGAACGGGTGATTGATGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp6w1	FBgn0033065	FBtr0085987	1	1	1	76	2R	2061676	2061815	GATTGGAAAGAACTTGCAGG		59	2061854	2061872	GGGAGCATAGATCCTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mir-100	FBgn0064160	FBtr0081064	3	1	1	60	2L	18471450	18471469	GTAAATCCGAACTTGTGCTG		59	18471492	18471510	TGACAGACTCCCATAATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-640b	FBgn0083025	FBtr0113543	1	1	1	107	2L	20419015	20419033	TGTTGAAGATGATGTGGCT		59	20419104	20419122	AGTTGGCAACCATCTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9336	FBgn0032897	FBtr0081427	1	1	1	122	2L	20859876	20859894	TTGCATGAAGAAGACCCTC		59	20860760	20860778	TTAACGAACGGCATAGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2478	FBgn0032872	FBtr0081403	2	1	1	85	2L	20652081	20652158	GAATCTGGAGAGGGAACTC		58	20652014	20652035	CAGCTATATGAATTGAGCAGAG		58	NA	
Drosophila melanogaster	50	CG16772	FBgn0032835	FBtr0081302	3	1	1	65	2L	19963267	19963285	CCCATTCAGTATCCCTACC		58	19963314	19963332	AGGAGTAAGCTTAGGTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)37Cc	FBgn0002031	FBtr0081165,FBtr0081164	1	2	2	69	2L	19123277	19123295	GAATGTCAACATCACGCTC		59	19123226	19123244	AATGGTGTAGATCTTGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15170	FBgn0032733	FBtr0081184	2	1	1	62	2L	18989985	18990003	TTCTTCCCTACAAGGAGTG		58	18989760	18989959	TAATGGAGTCCACAATGGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG10178	FBgn0032684	FBtr0081068	3	1	1	84	2L	18512377	18512457	CAATTGAAGGACCTCTACC		57	18512505	18512523	AGATCGATACTACGGTGAG		57	NA	
Drosophila melanogaster	50	btv	FBgn0023096	FBtr0110948	2	1	1	80	2L	17969772	17969850	TACTATGGCAAGGAGAAGGT		59	17969711	17969729	TTCGTCATGGGTTAGACAG		58	NA	
Drosophila melanogaster	50	Dhc36C	FBgn0013810	FBtr0080985	1	1	1	80	2L	17506725	17506886	CGTGGATAAGATTTGGAAAGAG		59	17506927	17506945	ATCTTGTCGATTTGCACCA		59	NA	
Drosophila melanogaster	50	trpgamma	FBgn0032593	FBtr0080946,FBtr0080945,FBtr0114470	3	3	3	81	2L	16665214	16665233	TCGAGCAAGAATATTTGTCC		57	16665101	16665173	GCTTAAGGGTCTTATCATTCAG		58	NA	
Drosophila melanogaster	50	CG31821	FBgn0051821	FBtr0080809	3	1	1	132	2L	15901512	15901530	TTATCCGCTTCATAGAGCG		59	15901345	15901418	CGCGGGATTGTATTAATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11864	FBgn0028944	FBtr0080784	3	1	1	163	2L	15613070	15613142	TTGAAGATGATGCATTTGCC		59	15612926	15612944	CAAGTGAACGGTATTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33306	FBgn0053306	FBtr0080564	1	1	1	60	2L	13843141	13843161	TGAAGGATGTCCTGATTTACC		59	13843101	13843119	GACAGGTTCTCGATCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5787	FBgn0032454	FBtr0080405	1	1	1	164	2L	12709471	12709489	TACCAATTCCAAGTCCACC		59	12709260	12709278	ATAGAGGGAAAGACAGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6192	FBgn0032341	FBtr0080230	2	1	1	82	2L	11104383	11104401	ATCCAATCCGCAGATTCTG		59	11104248	11104266	TAGATGACTCAGCTGAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17085	FBgn0032309	FBtr0080141	1	1	1	175	2L	10851681	10851699	TATTGAGGTTAGTTCGCGG		59	10851838	10851856	GAATCTGTATATGCCGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13142	FBgn0032251	FBtr0080028	2	1	1	83	2L	10440044	10440064	CCCTTCATAGATGTTACTCCA		58	10440108	10440190	ACGCTTCTCATCTACTTGAG		59	NA	
Drosophila melanogaster	50	CG5091	FBgn0032234	FBtr0080005	3	1	1	146	2L	10381313	10381385	TTCATTTCAAGTGCACGAG		58	10381494	10381513	ACCAACAATTCATCTCTTGC		58	NA	
Drosophila melanogaster	50	Fbp2	FBgn0000640	FBtr0079808	1	1	1	66	2L	9427244	9427322	ATGGGCATGAATCTGACTG		59	9427352	9427370	GTGTCTTGTCCATGTAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alien	FBgn0013746	FBtr0079781,FBtr0079780	1	2	2	94	2L	8996671	8996753	CATCGAAGAATATGGCACTG		58	8996596	8996614	GTTGGTCTTAAACCACAGC		58	NA	
Drosophila melanogaster	50	CG13091	FBgn0032055	FBtr0079684	3	1	1	75	2L	8519936	8519954	GAATGAAACGGTGGAAGGA		59	8520093	8520111	CGGTTTAGCCTTGAGTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7191	FBgn0031945	FBtr0079485	1	1	1	60	2L	7773612	7773631	CGCTACTATCGAAGGTATCC		59	7773654	7774214	AATTCATGTAAGAACCGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5149	FBgn0031904	FBtr0079469,FBtr0114587	1	2	2	106	2L	7386510	7386528	TACTACATCATGGAACGCG		59	7386181	7386440	TATTGCTCCAATTGCTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11050	FBgn0031836	FBtr0079292,FBtr0079293,FBtr0079291	3	3	3	105	2L	6616056	6616075	ATCCAAAGACGATAAGCGAG		59	6616142	6616222	CTCGTATTCCTCAAACAGCT		59	NA	
Drosophila melanogaster	50	CG13984	FBgn0031796	FBtr0079247	1	1	1	60	2L	6308876	6308896	CAGCACTATTTGCAGAATGAG		59	6308917	6308936	CTCCATAGTCGAAGAGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14017	FBgn0031721	FBtr0079105,FBtr0079104	1	2	2	60	2L	5554043	5554061	AGACATCGCCTACAATCAC		59	5554085	5554103	TAGATACCGTCTGTCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp4ac2	FBgn0031694	FBtr0079067	3	1	1	115	2L	5266887	5267085	TGATTAGCACAGCACTCTC		59	5267161	5267182	TAGCGTAAACTGAGGAATAACC		59	NA	
Drosophila melanogaster	50	NTPase	FBgn0024947	FBtr0077680,FBtr0077682,FBtr0077683,FBtr0077681	2	4	4	65	2L	2881300	2881382	GCTTTACAAGAAGATAGATGGC		59	2881256	2881274	GTCAGAACGTTGTATGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5080	FBgn0031313	FBtr0077981,FBtr0077982	1	2	2	197	2L	1162089	1162107	CTCCTACAATCAGCTGGAC		59	1161853	1161928	TTGTACTTCTCCTCTTGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	nAcRbeta-21C	FBgn0031261	FBtr0078064,FBtr0078065	1	2	2	80	2L	545556	545825	CTGAATCTCCGATGGAGAG		58	545869	545887	GGACTTCAAAGTGATCTGC		58	NA	
Drosophila melanogaster	50	al	FBgn0000061	FBtr0078053	3	1	1	78	2L	384874	384892	TTATCCCGACGTGTTTACG		59	385739	386319	TTGAAACCAAACCTGAATGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11601	FBgn0031244	FBtr0078137	3	1	1	64	2L	283010	283028	GAGATTCCTGGTCCATCTC		58	282964	282985	GGAAGTAGTGAAAGTATATCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR31331	FBgn0051331	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR32286	FBgn0052286	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Sep1	FBgn0011710	FBtr0077198,FBtr0077199	1	2	2	117	X	21230623	21230641	GAGTTCACCCTAATGGTGG		59	21230722	21230806	TTTGTTTCTCTATGGCGTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	D2R	FBgn0053517	FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461	1	4	5	80	X	19905587	19920746	TACTTTCTGGTAAATGGAGC		57	19905526	19905545	AGTAGAGCATATCACATCCA		57	NA	
Drosophila melanogaster	50	CrebB-17A	FBgn0014467	FBtr0074555,FBtr0074556,FBtr0112879,FBtr0074554,FBtr0074557,FBtr0112877,FBtr0112878	1	7	7	172	X	18267097	18267115	GGAGTCATACAGACAGCAG		59	18267324	18267342	TTACACGGAAAGGTTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gbeta13F	FBgn0001105	FBtr0074109,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107	1	5	6	143	X	15755398	15755416	CAACTCTTGCAGAACACAG		58	15755523	15755614	CTCTTGTTAGATGGTGGCT		58	NA	InUTR
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070769	1	1	7	100	X	5292704	5292722	TTACATCCTGACACAGCTG		59	5292784	5293573	GGAACACTTCTAGAATGTGGA		59	NA	
Drosophila melanogaster	50	CG11596	FBgn0023522	FBtr0070318,FBtr0070320	3	2	3	119	X	1822604	1823045	CATGGACCAGATTGATATTCCA		59	1823125	1823143	CGTTCTAAGGCTCCTTCAG		59	NA	
Drosophila melanogaster	50	futsch	FBgn0085416	FBtr0112628	3	1	1	134	X	1342696	1342714	CACGTGGACTTCTTTAAGC		58	1342810	1342893	TATAATGGTGACCTCCAACTC		58	NA	
Drosophila melanogaster	50	Caps	FBgn0053653	FBtr0091630,FBtr0091632	2	2	3	126	4	1254595	1257735	GAACATTACGGAGAACTGC		58	1257824	1257843	TAATGAGTCCAGTACTGTCG		58	NA	
Drosophila melanogaster	50	Dyrk3	FBgn0027101	FBtr0100402,FBtr0100404,FBtr0100406,FBtr0100403,FBtr0100405	2	5	5	140	4	1230561	1230632	AGTTACAGGGCAGAATAGGA		59	1230440	1230458	AAGTCCGTTTCTGGAACAG		59	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	3	7	7	85	4	208987	209060	CGGATCATAGACTTACGGA		57	208920	208938	ATCGAAGCATGGTTTAGTC		57	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	2	14	14	109	3R	27690344	27690863	AAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	ro	FBgn0003267	FBtr0085090,FBtr0085091	1	2	2	145	3R	22703382	22703400	GAGTACATCTCCAGGAGTC		58	22702883	22703274	ACAAAGTTTCTGTAGTGCTG		58	NA	
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100334	3	1	9	156	3R	22699712	22699802	AACAGCTACCCATATACGG		58	22699270	22699592	TAGTTGTCCCAATCTAGCG		58	NA	InUTR
Drosophila melanogaster	50	CG13408	FBgn0038929	FBtr0084179	2	1	1	80	3R	17907607	17907626	GAATAATGTGGAGGGAGCTC		59	17907669	17907986	TTGTGCCTCAGATAGTCAC		58	NA	
Drosophila melanogaster	50	CG6569	FBgn0038909	FBtr0113263	1	1	3	80	3R	17693174	17693192	ATCGAAACCATGGAGATGG		59	17693034	17693130	ATTAGTCTCTGGTCCCTGG		59	NA	
Drosophila melanogaster	50	alt	FBgn0038535	FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416	1	6	6	163	3R	13500932	13500950	TAGCAACCACAATAGCACC		59	13500724	13500805	ATGTGTTTGTCGTCTTGGT		59	NA	
Drosophila melanogaster	50	trx	FBgn0003862	FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949	3	5	5	118	3R	10091224	10091245	ATGAAGTATCGGACTCTTAAGG		59	10091050	10091145	TCGATAACCATTTCACCCG		59	NA	
Drosophila melanogaster	50	dpr5	FBgn0037908	FBtr0082395,FBtr0082394	3	2	2	110	3R	7331200	7331218	TATGTTCGATGTCTGGAGC		59	7331354	7331372	CATCCAGCAATTTCTACCG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG5281	FBgn0037902	FBtr0082391	3	1	1	61	3R	7262513	7262531	CAATGTGTACATCCTGCTG		58	7262556	7262574	AATTCGTCATGATGACGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scpr-A	FBgn0037889	FBtr0082357	2	1	1	61	3R	7066935	7066955	TCTCCAATTGATTCTCCTAGC		59	7066978	7066996	GGAGAGCACAATAGTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8176	FBgn0037702	FBtr0082064,FBtr0082065	3	2	4	185	3R	5348603	5349931	TAGCAATCAAGTCTCTGGC		59	5350154	5350172	GAATTCTGCGTCTTCATGC		59	NA	
Drosophila melanogaster	50	neur	FBgn0002932	FBtr0082001,FBtr0082002,FBtr0082004,FBtr0082003	2	4	4	225	3R	4847925	4847943	CGATATAAACGGCCAACTC		58	4847659	4847677	ATTCTCGTAGCAGATGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11970	FBgn0027503	FBtr0081959	2	1	1	247	3R	4814693	4814784	GATCATTGTGGGCAATACG		58	4814994	4815013	CTGGAGTAGCTCGAATAACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG41466	FBgn0084027	FBtr0111214	2	1	1	83	3R	298579	301806	TAATTATGGACTGGTCCCG		58	301853	301871	CAAGGGTACACAAACTTCG		58	NA	
Drosophila melanogaster	50	CG14642	FBgn0037222	FBtr0089687,FBtr0089688	2	2	2	161	3R	67638	67714	TACATCCATATACGAGGCG		58	67495	67514	TTAAGTAGGGCTATGTCGTC		58	NA	InUTR
Drosophila melanogaster	50	CG7607	FBgn0036145	FBtr0076163	1	1	1	83	3L	11193419	11193506	ATGGATGCTGGTTTCTACG		59	11193553	11193571	AACCATAACGTAGTCCGTG		59	NA	
Drosophila melanogaster	50	Gr66a	FBgn0035870	FBtr0076713	2	1	1	60	3L	8299720	8299741	TATCGGTCTGATTATGATGGTC		59	8299681	8299699	AATTCTACCCTGGTTTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7979	FBgn0035848	FBtr0076690	3	1	1	98	3L	8174976	8174994	TGTTATGACGAGGGAAAGC		59	8175342	8175361	ATAAGTGTTAAAGATGCGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	D19B	FBgn0022699	FBtr0077017	3	1	1	90	3L	6177480	6177498	TCTTCAAGATGCTCGAGTC		59	6177408	6177427	GAGTCATCCTGAGATACTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ppm1	FBgn0035143	FBtr0072553	2	1	1	60	3L	582081	582099	GTTTAATCGGGTCAATGGC		59	582123	582141	CTTGTAGATAAAGTCGCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HmgZ	FBgn0010228	FBtr0071673,FBtr0071674	1	2	2	64	2R	17585804	17585905	GAAGGATAAGACCGAGTGG		59	17585758	17585776	TTACCGCCTTGTTGTACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34115	FBgn0083951	FBtr0110813	2	1	1	98	2R	16864108	16864126	GTTTATTGTGGCCTTTGTG		57	16864246	16864264	TAGGGATAACGGTACTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Ext2	FBgn0029175	FBtr0100512,FBtr0100513	1	2	2	60	2R	12034454	12034472	CTGACCACTGATGAGTTGG		59	12034354	12034374	CAATGTGATCAGGAAACTCTC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087270,FBtr0087271	1	2	7	91	2R	11872859	11872986	ATCTTAAGCTAACCTGGTACAG		59	11872789	11872807	CTCCAAGTAGTGGAAGGTG		59	NA	
Drosophila melanogaster	50	CG13016	FBgn0033899	FBtr0087519	3	1	1	108	2R	10045929	10046004	CTCTTCTTATTCTATCCTGTGG		57	10046072	10046091	GTAGGTCGTTGATATACACG		57	NA	
Drosophila melanogaster	50	cnn	FBgn0013765	FBtr0100656,FBtr0087705,FBtr0087704,FBtr0100654,FBtr0087703	2	5	5	84	2R	9327822	9327906	AAGTCAGAGGAATCTACATCAC		59	9327759	9327777	GATCTACCTTGGCACAGTC		59	NA	
Drosophila melanogaster	50	Cyp4p3	FBgn0033397	FBtr0088593	2	1	1	131	2R	5131228	5131306	CCAAGCTAACATAGATGATGAG		58	5131398	5131416	GTAGTTTCCCTACCCATGG		59	NA	
Drosophila melanogaster	50	Su(var)2-10	FBgn0003612	FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578	2	9	9	80	2R	5005652	5005727	GCGAGGCTTAATCAAAGAG		58	5005770	5005789	CAGTTAAGGGAAACCTTCAG		58	NA	
Drosophila melanogaster	50	mXr	FBgn0050361	FBtr0088756,FBtr0088755,FBtr0088754	1	3	3	80	2R	4367409	4367427	GTTATTTGCACGGTCTACG		58	4366970	4367366	CATGGTGAATCCAATATGCT		58	NA	
Drosophila melanogaster	50	CG1603	FBgn0033185	FBtr0088979	3	1	1	117	2R	3403216	3403237	AGTGACTTCTTTATGTCTGAGG		59	3403060	3403078	GATTGCTCCGAATAAACGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11123	FBgn0033169	FBtr0088971	2	1	1	60	2R	3329424	3329442	AAGCTCAGTCATTCTGCTC		59	3329465	3329484	CTGGATCATCAATTTGGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13108	FBgn0032100	FBtr0079773	3	1	1	60	2L	9165137	9165155	GTGGAACTACAATCAGAGC		57	9165176	9165197	CCTCCAAAGTATCTTCTTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13791	FBgn0031923	FBtr0079521	3	1	1	69	2L	7578286	7578304	CAATTGCAATACCAGCGAC		59	7578235	7578253	ACCTTAGTGGTTCTGTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr28b	FBgn0045495	FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458	2	5	5	118	2L	7455130	7455213	ATTGTATTTCACGATCAGCG		58	7455031	7455049	TATTGAAGGTCTCACAGCA		58	NA	
Drosophila melanogaster	50	CG5149	FBgn0031904	FBtr0079469,FBtr0114587	2	2	2	61	2L	7386439	7386458	GAAATGACACCTTCAACAGC		59	7386156	7386174	GTAGCTCTTGATCACCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	tim	FBgn0014396	FBtr0114526,FBtr0077564,FBtr0077565,FBtr0100349,FBtr0077567,FBtr0114527,FBtr0100350,FBtr0077566	3	8	8	81	2L	3502696	3502714	GATTATGTCGCCAATGGAC		58	3502545	3502651	CTTCATGTTGATGAGGCTG		58	NA	
Drosophila melanogaster	50	Traf2	FBgn0026318	FBtr0071188	1	1	1	60	X	8049920	8049940	TATCGAACATCATACAGCTGG		59	8049880	8049899	ATCTCGATCTTGATGAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CDC45L	FBgn0026143	FBtr0070182	3	1	1	60	X	923485	923504	AGAATGATTTGCATCTGGTC		58	923392	923463	GAATACCTCATGGATTCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	elav	FBgn0000570	FBtr0114366,FBtr0070091,FBtr0100254	1	3	3	60	X	412385	412404	AGTAGGCTTTATTCGATTCG		57	412344	412362	GTTCAAGGCAATGATAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1542	FBgn0039828	FBtr0085757	3	1	1	84	3R	27039468	27039544	GAACGATGTGACCAAACTG		59	27039592	27039610	TGTGTTGATCATGTCCAGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG31058	FBgn0051058	FBtr0085198	2	1	1	60	3R	23474725	23474746	TTATTTCTCCACAGGATTACCC		59	23474686	23474705	ACATACTCTGACTTGGACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6356	FBgn0039178	FBtr0084601	2	1	1	81	3R	20112885	20112965	TGAACTGCTACCTGATGAG		58	20113008	20113028	CTGAAGAGAATCTTGTAGACG		57	NA	
Drosophila melanogaster	50	CG13604	FBgn0039137	FBtr0113275,FBtr0113276,FBtr0113277,FBtr0084509	2	4	4	125	3R	19815591	19815609	ATTTGGATTATGAGCCGGT		59	19815424	19815503	TATTTCCAGTTGTCTGCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG10217	FBgn0039113	FBtr0084464,FBtr0084465	3	2	2	158	3R	19587469	19587488	TTAGTACAGTCTGCTCTTGG		58	19587272	19587349	CACCAAGAATTCTCGTTCTG		58	NA	
Drosophila melanogaster	50	Cpr92F	FBgn0038819	FBtr0083919	2	1	1	192	3R	16495459	16496870	CCATTCTTTATTGCCGCAG		59	16497026	16497044	CATCCACGTAGGAGTAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ort	FBgn0003011	FBtr0083784	2	1	1	93	3R	15488647	15488771	ATAGAAGGATTGTAACCACCAC		59	15488825	15488843	AGTATTATCCGCGACTCCT		59	NA	
Drosophila melanogaster	50	CG7985	FBgn0028499	FBtr0083559	2	1	1	83	3R	14038862	14038880	CTACAAGGAGGACGAACTG		59	14038980	14038998	CCAAAGGTTTGAACGAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Pxd	FBgn0004577	FBtr0089287	1	1	1	81	3R	12853282	12853364	TTACTCCTGATCAACTGGAG		58	12853408	12853426	ATGGATGAAATGTGGTTGC		58	NA	
Drosophila melanogaster	50	CG14897	FBgn0038434	FBtr0083309,FBtr0083310	3	2	2	95	3R	12294591	12294682	CTTCATTGAAGCAATCGCA		59	12294357	12294376	AAGTATTTCCTTCGTCGTCC		59	NA	
Drosophila melanogaster	50	CG12241	FBgn0038304	FBtr0083051	3	1	1	93	3R	11045789	11045868	AGCTTCTAGCAATGACCAG		59	11045925	11045943	ATTCGGATTGCTAAAGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	beat-Va	FBgn0038087	FBtr0082688	2	1	1	186	3R	8669307	8672706	TAATTGACTACCCAATCGC		57	8669081	8669099	TAAATCGGACTCGTCAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8036	FBgn0037607	FBtr0081882,FBtr0081881,FBtr0081883	3	3	3	189	3R	4499021	4499107	GATCACTACCAGCAAGGAG		59	4499259	4499278	CCTAATCCTTGAGGATCTCG		59	NA	
Drosophila melanogaster	50	Atu	FBgn0019637	FBtr0078704	2	1	1	158	3R	1440189	1440307	AGGATGTGGGAAAGAAAGC		59	1440429	1440447	TCATAGAACGACTGTGGGA		59	NA	
Drosophila melanogaster	50	CG1427	FBgn0037347	FBtr0078702,FBtr0078703	2	2	2	83	3R	1427573	1427642	GTATAGCCTGCAAACTCGT		59	1427687	1427707	GTTGTGCCTCTAGTAAGTCTC		59	NA	
Drosophila melanogaster	50	CG13060	FBgn0036606	FBtr0075370	2	1	1	202	3L	16313032	16313110	AAATTTATCGGCGTCATCG		58	16313276	16313294	GTGGTCTTCACGATAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5644	FBgn0035948	FBtr0076556	1	1	1	100	3L	8971374	8971459	AGTGATGAAGAAACTTGCAC		58	8971293	8971314	CAATCTCTTGAAGATGATCAGC		59	NA	
Drosophila melanogaster	50	CG7112	FBgn0035879	FBtr0113153,FBtr0076605	3	2	2	81	3L	8343179	8343256	GCTCCTTCATATGCCTGAG		59	8343301	8343319	TTTGTAGAGATCACGGAGC		59	NA	
Drosophila melanogaster	50	mRpL50	FBgn0028648	FBtr0076891	2	1	1	60	3L	7236647	7236665	CTCGCTTCAACTGAAATCC		58	7236605	7236626	GTTCAGGAATTCGAATTTCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	msl-3	FBgn0002775	FBtr0076926,FBtr0076927	3	2	2	92	3L	7117435	7117511	GTTATGTCCACTGTCTGCA		59	7117361	7117379	CTCCGTATACAGCAAGTGG		59	NA	
Drosophila melanogaster	50	dib	FBgn0000449	FBtr0073205	3	1	1	78	3L	4063580	4063600	CAGGATTCTTAATCAGGATGC		58	4063699	4063717	TACCATGTTCTGGGTAACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14961	FBgn0035439	FBtr0073069	1	1	1	60	3L	3330612	3330630	GTACATCCAGTCCTACCAC		58	3330654	3330728	ATTCGATGACTCGTAGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9129	FBgn0035196	FBtr0072653	3	1	1	66	3L	1250879	1250897	GAGAATGGACAAGTCGGAG		59	1250924	1250945	CATGAACTCCAACATATACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8067	FBgn0033891	FBtr0087595	3	1	1	60	2R	9871620	9871639	TAGTTAAGGACGAAGAGCAG		58	9871718	9871737	CTAGAGATGACCAGATCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34234	FBgn0085263	FBtr0112428	1	1	1	83	2R	8374752	8374828	GATGAGAATGCGAGAAAGTC		58	8374688	8374706	ATAACGTCAAAGGTGTCAG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mys45A	FBgn0033379	FBtr0088628	3	1	1	96	2R	5000835	5000915	CATGAAGCTCAATTCGAGC		59	5000757	5000775	CTCGATCATGATATCAGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14767	FBgn0040777	FBtr0088718,FBtr0088720,FBtr0088719	3	3	3	118	2R	4606988	4607163	TCGCTATTACAACTCTCACC		59	4606889	4606907	CTCAGGTGGTAGTTCTAGC		58	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-525e	FBgn0083034	FBtr0113546	1	1	1	60	2L	20419490	20419508	TTTGTGTCTCAAATGCTCC		58	20419530	20419550	GCATAATTATTCAGGATGCCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9320	FBgn0032882	FBtr0081409	2	1	1	84	2L	20753100	20753185	CTACTTTAAGGAATACGTGGAC		58	20753230	20753248	CAGATTCAGCTCAAACAGC		59	NA	
Drosophila melanogaster	50	Sos	FBgn0001965	FBtr0080541	1	1	1	97	2L	13816692	13816774	TCAGAGAAAGAACGAGCAG		59	13816835	13816853	CGTTGGGTACACTAAGGTG		59	NA	
Drosophila melanogaster	50	CG34162	FBgn0085191	FBtr0112353	3	1	1	60	2L	11532800	11532821	GAATGGATATAGGAACATGGCT		59	11532841	11532924	TGATGGTATCATTGCAATCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG4497	FBgn0031895	FBtr0079418	1	1	1	115	2L	7192047	7192506	GATATTCACGGAAAGTCGC		58	7191950	7191968	TCGAGATGAACAACTTGGG		59	NA	
Drosophila melanogaster	50	CG9497	FBgn0031800	FBtr0079283	3	1	1	257	2L	6347615	6347794	GGACCTAAACTTTATCACTACC		57	6347313	6347331	CTGCATCAGTAGTCCATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	snoRNA:Or-aca5	FBgn0086672	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:K2:56EF	FBgn0011897	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG12856	FBgn0033966	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG41352	FBgn0083994	FBtr0111195	2	1	1	60	X	22319058	22319081	CGATACTAGTAATGTAACCAGAGG		59	22319100	22319118	ACGGGCATTATTTAGACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fog	FBgn0000719	FBtr0077342,FBtr0100538	1	2	2	169	X	22246596	22246614	TTTATGTGGCCAGACTTGG		59	22230964	22230982	CCATTCTCTGGACATTCCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14232	FBgn0031061	FBtr0074813	2	1	1	96	X	19597221	19597444	CAGTTTAAGCTGTACGCTG		58	19597143	19597161	TGTACTGGTGATAGTGCTC		58	NA	
Drosophila melanogaster	50	Sec61gamma	FBgn0031049	FBtr0074745	3	1	1	171	X	19537927	19537945	AGGTTGTTAAGTTTGCCGA		59	19538078	19538098	GGGATGTGTATCAACTTAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8028	FBgn0031010	FBtr0113005	3	1	2	78	X	19173010	19173028	ATTTGAGCTGGGATACAGC		59	19171954	19171973	AATACGAGATGCCAAGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Bx	FBgn0000242	FBtr0074598,FBtr0074597,FBtr0074599	1	3	3	108	X	18461161	18461553	GACTACTTGAGATTGTTTGGC		59	18461621	18461641	ACTCCAAGTGATAGACATTGG		59	NA	
Drosophila melanogaster	50	Aats-his	FBgn0027087	FBtr0074593,FBtr0074594	2	2	2	239	X	18413273	18413353	ATAAGTTGGATAAGTCGCCC		59	18413555	18413573	TAACTCGCTTATCCAGACC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG12991	FBgn0030847	FBtr0074448,FBtr0074449	2	2	2	114	X	17492122	17492140	ATTGGGATCGTACTGTACC		58	17492218	17492313	CATCCGAATTGTCACTCAC		58	NA	
Drosophila melanogaster	50	CG5010	FBgn0030821	FBtr0074387	3	1	1	127	X	17044229	17044247	TCAAACAGTTCATCCAGTG		57	17044338	17044356	GATATTCTACCGGAGCTGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Cap	FBgn0015615	FBtr0074291,FBtr0074290	1	2	2	87	X	16483582	16483674	GATGAGATAGATCAGGCGC		59	16483513	16483531	TAATGAACTGGGCAGTGTC		59	NA	
Drosophila melanogaster	50	CG9992	FBgn0030744	FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309	2	5	5	94	X	16277004	16277023	TAGTCCTACTTCCGAGACTG		59	16276867	16276947	CAAAGTTGTGCAAGTCCTG		59	NA	
Drosophila melanogaster	50	CG9066	FBgn0030703	FBtr0074166	3	1	1	129	X	15783355	15783373	TTTACGATGTCAGCAAAGG		58	15782439	15782458	TCATCGTATTCATCCTTGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Chc	FBgn0000319	FBtr0112798,FBtr0074180,FBtr0112797,FBtr0074182,FBtr0074181,FBtr0074179	1	6	6	92	X	15722670	15722757	CTTTATCAGTGTTACGACTTGC		59	15722599	15722617	AATCAAATAGGGCATGGCA		59	NA	
Drosophila melanogaster	50	l(1)G0136	FBgn0026666	FBtr0074084	1	1	1	96	X	15629320	15629338	CTTCATCGACAAGAAAGCG		59	15629465	15629483	GTTCGGATTGTTAAACACG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9220	FBgn0030662	FBtr0074064	3	1	1	182	X	15481545	15483667	AACATATTAGGAATCAGTCCGG		59	15481384	15481402	GATGTTCTCCATCACCTCG		59	NA	
Drosophila melanogaster	50	CG9512	FBgn0030593	FBtr0073979	2	1	1	140	X	14798009	14798027	ATTGGTTCACCTCAGATCC		58	14796867	14796885	GATCTGGAAGATCATCGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ag5r2	FBgn0020508	FBtr0073938	1	1	1	60	X	14677861	14677879	TCAACGATGACTACAAGTG		57	14677819	14677838	GCAATGTAGTTCCTCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0007	FBgn0026713	FBtr0073900,FBtr0073901	2	2	2	97	X	14117986	14118069	CCAGAACAATTACAGTTCGAC		59	14118128	14118146	TGATGTCCTTAAGCTGCTG		59	NA	
Drosophila melanogaster	50	up	FBgn0004169	FBtr0073851,FBtr0100561,FBtr0073853,FBtr0100563,FBtr0073852,FBtr0100562	1	6	6	80	X	13489402	13489421	GAGCTCATTGTCAAATTGGA		58	13489264	13489362	CAACTCTTTCAAATCGTAGTCC		59	NA	
Drosophila melanogaster	50	CG11816	FBgn0030495	FBtr0073785	1	1	1	60	X	13447203	13447221	CAGGAGGGCTACAATTCAG		59	13447161	13447180	AGTACTGTGTCTGGATTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10617	FBgn0030476	FBtr0073767	3	1	1	80	X	13257505	13257626	ATGGCCAGTATACAATCCG		59	13257670	13257688	CTCCTTGTCGATGGTATCG		59	NA	
Drosophila melanogaster	50	CG1806	FBgn0030360	FBtr0073574	3	1	1	75	X	11903187	11903206	CCGTATCTGAGTGGATTGTC		59	11903310	11903328	TGATCTTGTGATCCCTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Klp10A	FBgn0030268	FBtr0073478,FBtr0073475,FBtr0073477,FBtr0073476,FBtr0073479	1	5	5	93	X	11027534	11027552	TTGTGACCCTGAATATGCC		59	11027383	11027477	AGAAGATCGAAGACCTTGC		59	NA	
Drosophila melanogaster	50	Gtp-bp	FBgn0010391	FBtr0073480	3	1	1	252	X	11022187	11022206	AGTACCAGAACATCAACAGC		59	11021867	11021885	TTCGATATCAGATGGTCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2157	FBgn0030244	FBtr0073382	1	1	1	112	X	10764124	10764221	CTGGGTGGATTAGATGGTG		59	10764297	10764315	GATCCATAGCCACCAAGAG		59	NA	
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475	2	6	7	169	X	10173217	10217610	AAGGTCAAAGAGATGATGGA		58	10173067	10173085	AGTCCCATAATGTACAGGG		58	NA	
Drosophila melanogaster	50	Sp1	FBgn0020378	FBtr0071381,FBtr0112894,FBtr0071380	1	3	3	60	X	9648300	9648318	GAACATCCATTCGTGTCAC		58	9648342	9648360	CAGATGTGACGTCTTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mei-P26	FBgn0026206	FBtr0071303	1	1	1	87	X	9064243	9064342	ATCGCTATACGAGACAACG		59	9064393	9064411	GATAGAGGAATGTGCCGTC		59	NA	
Drosophila melanogaster	50	CG32706	FBgn0052706	FBtr0071287	2	1	1	80	X	8981291	8981309	GACTAAGCTAGGCGAAGTG		59	8981353	8981371	TTTGAGGGATTTGCTACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mys	FBgn0004657	FBtr0071105	2	1	1	118	X	7958772	7958790	TATGTCTCGACCATTCCCA		59	7959558	7961105	TTCACCTCGTTAGAGAAGC		59	NA	
Drosophila melanogaster	50	l(1)G0193	FBgn0027280	FBtr0071130	2	1	2	82	X	7837250	7837724	CCATGATAGTGTCTACCGA		57	7837186	7837205	GGCTATATCCGCATATAGTG		57	NA	
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	1	12	15	238	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978622	6978640	ATTGATCTACCTCTGTGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	1	8	8	166	X	6579447	6579465	ACAACGTCTTCCACTACAG		59	6579594	6579676	TGGAGAAGTCACATTGAAGG		59	NA	
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	3	8	8	60	X	6579593	6579674	GCCTTCAATGTGACTTCTC		58	6579697	6579716	GTGGATAACTGTCCACAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14798	FBgn0029588	FBtr0089693,FBtr0089694	1	2	2	286	X	1587078	1587096	AAATCGAGCCTCACATCAG		59	1587472	1587490	AAAGTCATGGGATCCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(1)G0431	FBgn0028274	FBtr0070297	2	1	1	90	X	1356602	1356687	CTTATGGATACAATCGCGG		58	1356530	1356550	CCATTGACGTAGTCTTTAAGC		59	NA	
Drosophila melanogaster	50	CG32813	FBgn0052813	FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219	3	4	6	225	X	1283913	1283931	CAACCATTCGTTCATGGAC		59	1284338	1284356	CTTGATAAGGATCACGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177	3	4	5	90	X	938610	938748	AATCTGGATAAGGCTCCTG		58	938802	938820	CACTATCTGGCATACCTGG		59	NA	
Drosophila melanogaster	50	CG7359	FBgn0025617	FBtr0070141	3	1	1	87	X	700766	701013	ACCTATTCCACTACCTAATCGA		59	701061	701079	AGGTAATTGAAGGCCAGTC		59	NA	
Drosophila melanogaster	50	svr	FBgn0004648	FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070082	3	5	7	107	X	396959	398709	GAACTTTGATGGCAACTTCC		59	398778	398797	TGGTGTTCGTATTTAGTCGG		59	NA	
Drosophila melanogaster	50	CG41536	FBgn0085675	FBtr0114123	3	1	1	67	U	8007360	8007381	CACCTCCGTTATTATTTGAGAG		58	8007314	8007332	AATTCAAGGACATTGCCAG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40793	FBgn0085517	FBtr0113930	2	1	1	156	U	6328564	6328582	TTTGAGAAGACATGTGCTG		57	6328200	6328218	TGAATTCGGCTCTGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17691	FBgn0039993	FBtr0113760,FBtr0113759,FBtr0113761	1	3	4	101	U	1184287	1184359	CATGTGCTATTAGAAGTAGCAG		58	1184421	1184439	AATGGTAATAGCGTCCCAC		59	NA	
Drosophila melanogaster	50	CG40245	FBgn0058245	FBtr0113844	3	1	1	86	U	687936	687954	GATTCTCCAGAAGCTTCTG		57	687868	687887	TCGAATTGGTTCCATATGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Caps	FBgn0053653	FBtr0091631	1	1	3	82	4	1254541	1254562	GAGGACTTAATACACTTAGCAG		58	1254605	1259581	AACCATGCAAATGCTTCTC		59	NA	
Drosophila melanogaster	50	CG41130	FBgn0069921	FBtr0100311	2	1	1	62	4	1223118	1223136	TAAAGCGTGTCCTTTACCA		58	1223162	1223180	GTCATACAAAGTGGCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snRNA:U1:82Eb	FBgn0004183	FBtr0078851	3	1	1	61	3R	773830	773849	ATGGAAATTCCTATGCCGAG		59	773788	773806	ATCACGGTTAACCTCTACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5-HT7	FBgn0004573	FBtr0085746	1	1	1	60	3R	26795820	26795839	CTCTCGTCTCTATTCCTCTG		58	26795779	26795799	CGTAGATAATAGGGTTCAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ctr1C	FBgn0062411	FBtr0085750,FBtr0085749	2	2	2	60	3R	26789597	26789617	CGGAAGGGATCAGTATAATCG		59	26789557	26789577	CTGGTTGTAATTGTAGTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12071	FBgn0039808	FBtr0085716,FBtr0085717	2	2	2	161	3R	26705208	26705226	CAACTGACCTACAACATCC		57	26704954	26705083	CTTGTTGGTGGACTTTGAG		58	NA	
Drosophila melanogaster	50	aralar1	FBgn0028646	FBtr0085695,FBtr0085692,FBtr0085694,FBtr0085693	2	4	4	80	3R	26274281	26274365	CTAGTTTCGGTAACTGAGGG		59	26274220	26274238	CAGTTCCATGTTGTTCAGC		59	NA	
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085631,FBtr0085634	1	4	5	240	3R	26212044	26212062	CAGCGATCTGATCAATGTG		58	26211760	26211778	CTTCTTGAGAGTGGTCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34300	FBgn0085329	FBtr0112496	3	1	1	129	3R	26132009	26132080	GCAGTATCTTGCAGATCGA		59	26131898	26131917	GGAATCGATTCTAGAGTGCA		59	NA	
Drosophila melanogaster	50	CG34133	FBgn0083969	FBtr0110888	2	1	2	81	3R	25695763	25696966	CCGTGATAGGACCTAATAGC		59	25697010	25697028	GCATCTGTCTCAATGACCT		59	NA	
Drosophila melanogaster	50	SP1029	FBgn0040282	FBtr0085400,FBtr0085398,FBtr0085399	2	3	3	106	3R	25071030	25071112	TACAAGTTCTACCATCCGC		59	25070942	25070961	TTCACGAAGTCCTTGAACTC		59	NA	
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085141,FBtr0114372,FBtr0085144,FBtr0085142,FBtr0085137,FBtr0085138,FBtr0085145,FBtr0085146,FBtr0085140,FBtr0085143,FBtr0112834,FBtr0085139	2	12	12	64	3R	22891842	22891860	ACGATGAGTACAAACAGGC		59	22891729	22891747	GAAGTCACAGGGTTGATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17191	FBgn0039473	FBtr0085152	2	1	1	60	3R	22844564	22844583	ATCCGTAACGTATTACGTGG		59	22844523	22844541	GTGACACTTGATCGTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	malpha	FBgn0002732	FBtr0084956	2	1	1	60	3R	21836769	21836787	TTCAAGAAGCAACAGAAGC		58	21836811	21836829	CGGATTCTAGCGATTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LpR1	FBgn0066101	FBtr0113480,FBtr0084925	3	2	6	156	3R	21575100	21577790	TATAAATGAGGCCACTTGCT		59	21573919	21573938	ATATTCATCCGGTGAACAGG		59	NA	
Drosophila melanogaster	50	CG5028	FBgn0039358	FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290	2	5	5	107	3R	21507673	21507691	ACATGACCAATCTGTACGG		59	21507762	21507839	CAAAGATGGCGTAATGGTC		58	NA	
Drosophila melanogaster	50	Fur1	FBgn0004509	FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986,FBtr0089983	2	6	6	80	3R	21183224	21183305	CAGGATAACTACGATCCCA		57	21183162	21183180	GTCCGTCATATCGTAATGC		58	NA	
Drosophila melanogaster	50	CG10560	FBgn0039325	FBtr0084852	3	1	1	84	3R	21144643	21144664	GAACTACTCTAAGAAACTGCCA		59	21144517	21144599	TATAGAGCAAATGAAGGCCC		59	NA	
Drosophila melanogaster	50	CG10513	FBgn0039311	FBtr0114505	2	1	1	60	3R	21101739	21101757	GGCCATATTGACCAATGAC		58	21101697	21101715	GTCATCCTTCATCAAAGCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11878	FBgn0039310	FBtr0084821	1	1	1	60	3R	21099578	21099599	GAAATCTACCCACAAAGTTCAC		59	21099620	21099638	ATCCTGCACATATTCCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13615	FBgn0039199	FBtr0084617	3	1	1	150	3R	20216975	20216993	GTACGGAACCTACTACTGC		59	20217106	20217191	GTAATTAAACATGGTGGCCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17780	FBgn0039197	FBtr0084621	1	1	3	93	3R	20209177	20209259	GTATTTACACTGGATGAGCAC		58	20209104	20209122	AACTCAATGGACAATGGCT		59	NA	
Drosophila melanogaster	50	cav	FBgn0026257	FBtr0084557,FBtr0084558,FBtr0084556	1	3	4	83	3R	20048171	20048189	TGATTCTATGGATGCACGA		58	20048297	20048315	AAAGCTCCTTTACCTCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Syx1A	FBgn0013343	FBtr0084588	3	1	1	60	3R	19929342	19929360	TCATGATACTGATCTGCCT		57	19929300	19929319	TAACTGCTAACATATGAGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10365	FBgn0039109	FBtr0084447,FBtr0084448,FBtr0084446,FBtr0084449	2	4	4	108	3R	19554818	19554837	TATTCGAGGATATGTTCGCC		59	19555685	19556379	AGTGATTCCCTCTTTGTCC		58	NA	
Drosophila melanogaster	50	CG13408	FBgn0038929	FBtr0084179	1	1	1	80	3R	17907607	17907625	GAATAATGTGGAGGGAGCT		58	17907669	17907986	TTGTGCCTCAGATAGTCAC		58	NA	
Drosophila melanogaster	50	CG6560	FBgn0038916	FBtr0084151	2	1	1	72	3R	17712036	17712054	AAGACCACGATACTGAAGC		59	17711919	17711937	TGATGTTAAATCCTGCCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	2	22	22	85	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202453	17202548	GTTCAGGAATACGATAGCG		57	NA	
Drosophila melanogaster	50	CG34008	FBgn0054008	FBtr0100063	1	1	1	84	3R	16406880	16406898	ATCACATTGATACCAGCAG		57	16406746	16406764	TTAAATATCGTGCATGGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5191	FBgn0038803	FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905	3	5	5	89	3R	16396363	16396821	TGTCGACAGGTAAATCCTC		58	16396873	16396892	TATCACGTTGTCTATCTCCC		58	NA	
Drosophila melanogaster	50	CG4323	FBgn0038797	FBtr0083891,FBtr0083892	2	2	2	80	3R	16327293	16327370	CAGATTAGGAGATCTATCGAAGG		59	16327235	16327255	TCATAGTGCATCATGGTAACC		59	NA	InUTR
Drosophila melanogaster	50	CG4836	FBgn0038762	FBtr0083828	3	1	3	158	3R	15842472	15842555	AAAGGATGACAGAATAGGCA		58	15842676	15842694	TCGTAGGGATTCGTTATGC		59	NA	
Drosophila melanogaster	50	CG4538	FBgn0038745	FBtr0083855,FBtr0083856	2	2	2	91	3R	15725519	15725605	CTCTATAATGGAACAACTGCTG		58	15725449	15725467	CTTTAACATAGTCGGCGGT		59	NA	
Drosophila melanogaster	50	CG11779	FBgn0038683	FBtr0083750,FBtr0100549,FBtr0083749,FBtr0100548	3	4	4	81	3R	14981620	14981638	CTCGTCATGAGCGATAGTG		59	14981490	14981508	AGAACTTGGAGTCCTTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34283	FBgn0085312	FBtr0112479	1	1	1	60	3R	14547965	14547983	AATGATTGTCCAGACCGAG		59	14547923	14547941	AAGGCAACTCATCACTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083651,FBtr0083649,FBtr0083643,FBtr0083652,FBtr0083648,FBtr0083642	2	6	13	84	3R	14256555	14256573	CCAGACGGACAATATCGAC		59	14252824	14252843	ATGATTTCGATCCAGTTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18598	FBgn0038589	FBtr0083569	3	1	1	64	3R	14077109	14077127	TGATCGAGACCAAGTTGTG		59	14077154	14077173	GTAATTCCACAGATCCCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7379	FBgn0038546	FBtr0083529	2	1	1	153	3R	13622782	13622800	AGTTGGTGGCAATAATTCC		57	13622586	13622665	AAAGGAGATCTGATTGCAG		57	NA	
Drosophila melanogaster	50	pxt	FBgn0038538	FBtr0083507	3	1	2	108	3R	13547153	13547235	TTAACACGATTAGGAGATGGC		59	13547305	13547323	TTAGTTCGTGTAGTGCACC		59	NA	
Drosophila melanogaster	50	kuk	FBgn0038476	FBtr0083398,FBtr0083397	3	2	2	60	3R	12908691	12908709	TGGCAAAGATAAGTCACAG		57	12908731	12908751	AGATTTCTCTACCTTCTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14891	FBgn0038445	FBtr0083302,FBtr0083301	1	2	2	60	3R	12398522	12398542	CAGAACTTTACAACGCTACAC		59	12398563	12398582	CCAGAAACTCCAAGGTAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dhfr	FBgn0004087	FBtr0083295,FBtr0110910	3	2	2	60	3R	12307241	12307259	TGAACATAGTGCTGAGCAC		59	12307282	12307301	CACAATAGTACTCCCTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17929	FBgn0038415	FBtr0083270	2	1	1	60	3R	12151663	12151682	TTAACCATGACCTTCCTACC		58	12151754	12151773	TCAATTGCATTAGACCTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6125	FBgn0038337	FBtr0083105,FBtr0083106	3	2	2	88	3R	11229093	11229168	TTAAACAGCATGAATCCACG		58	11229024	11229042	CAACTCAGATCGTAGTGCA		59	NA	
Drosophila melanogaster	50	Trax	FBgn0038327	FBtr0083093,FBtr0083092	2	2	2	60	3R	11188345	11188364	TATGGCGTAAGATCACTACC		58	11188387	11188405	TTGTAGCAAACATTCTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7262	FBgn0038274	FBtr0083008	3	1	1	213	3R	10722102	10722184	ATGTTAACAGTGGACTCTTCC		59	10721909	10721927	CTTAACGATCCACCTAGCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14853	FBgn0038246	FBtr0082960,FBtr0082961	1	2	2	114	3R	10442724	10442908	CAAATTGATCCTGCAATACG		57	10443042	10443060	ATTGTAGTTCTCATCGCTG		57	NA	
Drosophila melanogaster	50	CG14840	FBgn0038217	FBtr0082952	1	1	1	115	3R	10086798	10086816	GAATGACAAGCAATGCCTG		59	10086701	10086721	CTTTCTTCGAATTAGGTTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Abi	FBgn0020510	FBtr0112896,FBtr0082910	1	2	2	97	3R	9946183	9946424	ATCAACAGGAATCACTTCAG		57	9946105	9946123	AAGTCTTGATGCTCATCCT		58	NA	
Drosophila melanogaster	50	CG14357	FBgn0038204	FBtr0082913	2	1	1	60	3R	9937689	9937707	ACTACGGAACTTTGATGCT		58	9937647	9937665	TGGTTGATTTGAAGGAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yellow-e	FBgn0041711	FBtr0082757	2	1	1	83	3R	9236553	9236571	GGTTTGACTTTCGATGAGC		59	9236111	9236129	GACATTCTTATGCACGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31342	FBgn0051342	FBtr0113404,FBtr0113403	1	2	2	80	3R	8813014	8813032	TATGCTTACCGAGAATGGA		57	8813075	8813170	AAATTTAGGACTTGATCGGC		58	NA	
Drosophila melanogaster	50	Men	FBgn0002719	FBtr0082660,FBtr0082661	2	2	2	179	3R	8539998	8540016	CTCTTGGTATTGCCAACCT		59	8539781	8539799	AAGTATCGATGGGTTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp9f2	FBgn0038037	FBtr0082599,FBtr0082598	1	2	2	89	3R	8229403	8229421	CAGCCATTCACATACTTCC		58	8229275	8229293	GTAGATAACAGCCTTTGCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14736	FBgn0037986	FBtr0089692,FBtr0089690	1	2	3	135	3R	7867673	7867745	CTACAAGAGCAGGTACTGG		59	7867906	7867924	GCAGGACTCTGTTTAACAC		58	NA	
Drosophila melanogaster	50	HisCl1	FBgn0037950	FBtr0082470	1	1	3	129	3R	7614623	7614644	GGTGTTTGTATTCCTTTCTCTG		59	7614734	7614804	TAGTGCAGACTTTAGGTCG		58	NA	
Drosophila melanogaster	50	CG6666	FBgn0037873	FBtr0082372	3	1	1	60	3R	7035053	7035072	CAATGGTATTAGGCATCTCC		57	7035012	7035032	GTAAACCTCCTTGATCTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS29	FBgn0037752	FBtr0082137	2	1	2	100	3R	5604291	5604309	AGATTCTTTGATGGAACCG		57	5604373	5604391	ATGTTAAGGCCATACTTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9399	FBgn0037715	FBtr0082109,FBtr0082110	1	2	2	242	3R	5399132	5399150	TGTACAACGGGATGATTGG		59	5398350	5398368	TCTTGGGTATGATCACCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	AP-47	FBgn0024833	FBtr0082114	2	1	1	60	3R	5384455	5384474	TAAGTATCGCAAGAACGAGG		59	5384414	5384432	GTTTGCGAGAAGATTCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fps85D	FBgn0000723	FBtr0082053,FBtr0082051,FBtr0082052,FBtr0082054	3	4	4	91	3R	5194240	5194258	TGATGTGGGAGATCTTCTC		58	5194104	5194186	CATACGATATCCCGTATCGA		58	NA	
Drosophila melanogaster	50	Rel	FBgn0014018	FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338	1	4	4	60	3R	4870880	4870898	ACTACATACGACCTTTGCT		58	4870838	4870857	TTTCCGGCATTATTCTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ada2b	FBgn0037555	FBtr0081807,FBtr0100368	1	2	2	80	3R	4063877	4063895	CATACCTCCAATGGAAGTC		57	4063748	4063833	TGACATTTCGACCTTTCTG		57	NA	
Drosophila melanogaster	50	CG7800	FBgn0037552	FBtr0081795	3	1	1	60	3R	4044172	4044190	CTTTAAAGGCCTAGCTCAG		57	4044212	4044232	CAAACCTTGAATACCATTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31284	FBgn0051284	FBtr0081754,FBtr0081755,FBtr0081753	3	3	3	238	3R	3720343	3723577	CAAATAACCGCTTCAAATCG		58	3723778	3723796	CTTCATCTGGTCGATCAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Sp7	FBgn0037515	FBtr0081740,FBtr0081742,FBtr0081743	2	3	4	92	3R	3586989	3587741	ACAAGGAAGTTGTAGGAATCC		59	3587795	3587813	TAAGACTGCTGAATCACGG		59	NA	
Drosophila melanogaster	50	CG10055	FBgn0037482	FBtr0081605	3	1	1	172	3R	3011470	3011544	CTGAGTGAGTTGGACAGAG		59	3011316	3011335	TAGCGTAAAGGATTCTGGTG		59	NA	
Drosophila melanogaster	50	CG1104	FBgn0037467	FBtr0081643,FBtr0081644	3	2	2	138	3R	2897574	2897646	GGTATCACGATTTGGTCCT		59	2897454	2897472	TTAGAAATCGATGCACGTG		58	NA	
Drosophila melanogaster	50	CG1104	FBgn0037467	FBtr0081643,FBtr0081644	1	2	2	137	3R	2897573	2897645	GTATCACGATTTGGTCCTG		57	2897454	2897472	TTAGAAATCGATGCACGTG		58	NA	
Drosophila melanogaster	50	Ama	FBgn0000071	FBtr0081619,FBtr0081620,FBtr0081618	3	3	3	65	3R	2589588	2589607	TCTTATATTCTGCCTTGCGA		58	2589635	2589653	CTGATCTGGCTGATCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15186	FBgn0037448	FBtr0081674,FBtr0081673,FBtr0081672	1	3	3	96	3R	2319012	2319030	GTTAACCAGATCCCTGGAC		59	2319089	2319280	CAACTCGTCCATATTTGCAG		59	NA	
Drosophila melanogaster	50	CG1041	FBgn0037440	FBtr0081734,FBtr0110774	3	2	2	103	3R	2198947	2199031	GGAATTTGACCAAGAACTCC		58	2198863	2198881	CAAGGGAATGGTCTTCTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Hr83	FBgn0037436	FBtr0081713	3	1	1	65	3R	2175559	2175579	TTTATGGAGTCCCTAATCCTG		58	2176039	2176057	CAGGATAACGGCATACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17919	FBgn0037433	FBtr0081711	3	1	1	62	3R	2170307	2170325	CAGGTTAAGGATCAGCCAG		59	2170351	2170369	AATGAGCGTGTAGAACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	jagn	FBgn0037374	FBtr0078624,FBtr0078626,FBtr0078625	1	3	3	97	3R	1605870	1605888	CGAGACAGACATCTTTGTG		58	1606011	1606029	AGTACAGCGTAAATCCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14662	FBgn0037291	FBtr0078846	2	1	1	60	3R	808369	808388	TCAGGGAAGATTTGAGAAGG		59	808094	808113	GTCAATAGTAGCAATCGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40400	FBgn0058400	FBtr0111160	3	1	1	73	3L	24524624	24524642	TTTGCTTATACCCGTTCAC		57	24524186	24524205	TGAACACATTCAGTTAGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nAcRalpha-80B	FBgn0037212	FBtr0113189,FBtr0089255	2	2	2	81	3L	23262559	23262578	AATATCGATCGACTCGTGTC		59	23262622	23271328	ATTCGCCGTAATGTTTCCT		59	NA	
Drosophila melanogaster	50	CG33214	FBgn0053214	FBtr0078388	3	1	1	88	3L	21497149	21497167	CCTGTGGAAAGAACATCGA		59	21494016	21497097	ACAGTGAATCACCTTTCCG		59	NA	
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0100238,FBtr0100237,FBtr0078257	3	3	10	189	3L	20809757	20809775	CACATGTCCTACATGATGG		57	20809928	20825958	GTTTGACTTGTTCCCTCTC		57	NA	InUTR
Drosophila melanogaster	50	polo	FBgn0003124	FBtr0100318,FBtr0074839	2	2	2	142	3L	20305703	20305789	TCTGTGCAGCTAAACTTCTC		59	20305893	20305912	TACAAGTCTTTAGACACGCC		59	NA	
Drosophila melanogaster	50	CG7290	FBgn0036949	FBtr0074858	3	1	1	72	3L	20198599	20198617	GAACAACTATCCATGCAGC		58	20198545	20198563	AAGATTGCATAGGTTGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fln	FBgn0005633	FBtr0074910	3	1	1	144	3L	19983177	19983257	GAATATCAGTGGCAGTGAC		57	19983051	19983069	TTACTAAAGGACACTGGCA		58	NA	InUTR
Drosophila melanogaster	50	CG6836	FBgn0036834	FBtr0075023	2	1	1	80	3L	18947755	18947835	TCCAGATACATGGTATGGC		58	18947878	18947897	AATGTCCCGGTAGTATAGGA		59	NA	
Drosophila melanogaster	50	CG6311	FBgn0036735	FBtr0075208	3	1	1	68	3L	17520436	17520455	AAATGGCTCAGTGTAAATCG		58	17520332	17520350	AACCTCATTAATGCCACAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	rogdi	FBgn0036697	FBtr0075283,FBtr0075282	2	2	2	86	3L	17045160	17045179	AAGTTCATACTCACCGTGTC		59	17045228	17045832	AAAGCTAATGTCAGCCTGG		59	NA	
Drosophila melanogaster	50	Exn	FBgn0027593	FBtr0075271,FBtr0075273,FBtr0075272	3	3	3	191	3L	16983971	16984124	CATTCGTAGATGACTCAGAC		57	16984278	16984296	AATCATCCGAAATGACCAC		57	NA	
Drosophila melanogaster	50	Aats-tyr	FBgn0027080	FBtr0075410	1	1	1	197	3L	16411296	16411314	TAGATCCCATTCGAAAGGC		59	16411055	16411073	GCACATATAGAGTATCGGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13059	FBgn0036607	FBtr0075371	1	1	1	102	3L	16317194	16317212	TTAAGACTGTGGTCTCCTC		57	16317278	16317296	ATCACGGTCTTGATAACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf4	FBgn0010280	FBtr0114589	2	1	5	191	3L	16107926	16108769	ACCAAGACCATCAATCAGG		59	16108921	16109143	GCTTAAAGTTATCGATGGACTC		58	NA	
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0075438,FBtr0112850,FBtr0075439	1	3	6	83	3L	16070897	16073864	AGAAGAGCTCAAGCAACTC		59	16073908	16073929	CTAATTACTCTAATCAACGCGG		59	NA	
Drosophila melanogaster	50	th	FBgn0003691	FBtr0075499,FBtr0075501,FBtr0075500	2	3	3	60	3L	16033060	16033078	TTGTAGCTGATCTTCCGTC		59	16033018	16033036	TTCGTGTTGTTATCCACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7304	FBgn0036527	FBtr0075577,FBtr0075576	2	2	2	60	3L	15673543	15673561	GACGAACAGACTTTAGCCT		59	15673585	15673603	AGCTCCAATCGTACATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eig71Ek	FBgn0014851	FBtr0075575	1	1	1	139	3L	15654551	15654572	GAATAGGACGATTTGATGAGAC		58	15654728	15654746	CATATCATCACAGCGTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Eip71CD	FBgn0000565	FBtr0075553,FBtr0075552,FBtr0075555,FBtr0075554	1	4	4	68	3L	15505789	15505807	CATAACCACTGAGATTGCA		57	15505898	15505916	AACCTATACTTCTGGTGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	Hsc70-1	FBgn0001216	FBtr0075761,FBtr0075762,FBtr0075763	2	3	3	60	3L	13970261	13970279	GGAATACTCAATGTGACGG		57	13970301	13970321	TGATAGTGATACGGTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10171	FBgn0036353	FBtr0075865,FBtr0075864	2	2	2	224	3L	13379874	13379892	AGTGTCAACCTGATTTCCA		58	13379606	13379624	GCTAGGCGATATGTAAGCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	MICAL-like	FBgn0036333	FBtr0075898	3	1	1	60	3L	13007565	13007586	AAGACAACCACTACTGATTCTC		59	13007526	13007545	AGTAATCAGAACTTTGTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32064	FBgn0052064	FBtr0076288	3	1	1	60	3L	10484291	10484310	TGTTCTGAAGTCAGTAGTCC		58	10484330	10484351	GGTACGTATTTGGATCAAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12303	FBgn0036083	FBtr0076294	2	1	1	60	3L	10424767	10424786	TTGTGGGAATATCATCACCT		58	10424726	10424746	GTTTGTCATAAGATCCTCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32056	FBgn0052056	FBtr0076303,FBtr0076301,FBtr0076302	1	3	3	85	3L	10214550	10214568	TTCTTCGGCATCAATTTCC		58	10214222	10214501	AACATGGCATCTATGAGGA		58	NA	
Drosophila melanogaster	50	Cpr66D	FBgn0052029	FBtr0076567	3	1	1	213	3L	8633926	8633944	ATCGGTCAGGGATTATCAG		58	8636163	8636181	GAATCCAAACTGGTACGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Gug	FBgn0010825	FBtr0076619,FBtr0076618	1	2	4	80	3L	8463408	8463429	CCAAATATGCTTATACCTAGGG		57	8463467	8463539	CTGTAAATACTGTAGTTGGTCG		58	NA	
Drosophila melanogaster	50	Gug	FBgn0010825	FBtr0076619,FBtr0076618	1	2	4	80	3L	8463408	8463429	CCAAATATGCTTATACCTAGGG		57	8463467	8463539	CTGTAAATACTGTAGTTGGTCG		58	NA	
Drosophila melanogaster	50	CG13672	FBgn0035862	FBtr0110798	2	1	1	102	3L	8242038	8247971	ATATGTCATAAGAGCCGAGAC		59	8248035	8248053	ATTGTTGGAGAACTCGACG		59	NA	
Drosophila melanogaster	50	bip1	FBgn0026263	FBtr0076745	2	1	1	123	3L	8048536	8048991	CATTGAACTTGTTGAGAGCC		59	8048432	8048450	GTTTATGGACAGCACATCG		58	NA	
Drosophila melanogaster	50	Clk	FBgn0023076	FBtr0100132,FBtr0076785	2	2	3	172	3L	7761742	7761819	AATCATAATGAGGCCACCG		59	7761588	7761607	GAGGTAATACTTTCCGAGGC		59	NA	
Drosophila melanogaster	50	Hn	FBgn0001208	FBtr0100225,FBtr0076811	3	2	2	115	3L	7755646	7755730	AATTGTCCACCATCTTCTGG		59	7755808	7755826	GAGGCAATACTCCAGTTCC		59	NA	
Drosophila melanogaster	50	lqf	FBgn0028582	FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794	1	6	6	80	3L	7527254	7527341	GCAGGATTTCAAGGATCCA		59	7527383	7527403	AGCAGATCTAGCAAATGACTC		59	NA	
Drosophila melanogaster	50	bhr	FBgn0082598	FBtr0076849,FBtr0076848	2	2	2	72	3L	7365559	7365578	GATGCCTTTGTCAAGTTCAC		59	7365613	7365692	TTTACGACAGGTAGCTAGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG8629	FBgn0035742	FBtr0076925	3	1	1	201	3L	7121277	7121296	AAGAACTTCTCCAAGAAGCC		59	7121095	7121113	ACTTCTCGTACACCTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14910	FBgn0035700	FBtr0076965	1	1	1	79	3L	6455164	6455182	GTTCCTTCTCTGCCTACTC		59	6455225	6455243	TTATTGTCTTGGCAAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10625	FBgn0035612	FBtr0113144,FBtr0077140,FBtr0077139	1	3	7	80	3L	5538118	5538136	AATTCTCGACATTGACGAC		57	5537032	5538076	CCATACCTATAGGCATTTGTG		58	NA	
Drosophila melanogaster	50	Src64B	FBgn0003501	FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321	2	5	5	158	3L	4596190	4596208	ATCTGAGCTTCATGAAGGG		59	4595932	4596069	TCTCAAAGAACCAGTCTTCG		59	NA	
Drosophila melanogaster	50	CG7465	FBgn0035551	FBtr0073306	2	1	1	167	3L	4480849	4480868	CTCCTTCCAACGAGTATCTG		59	4480998	4481016	TCTTGTAACGGTAACCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15022	FBgn0035547	FBtr0073333	3	1	1	63	3L	4459959	4459978	ATTGATCTGCACTATCAGCC		59	4459915	4459933	GGATATCGAACTTGGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1295	FBgn0035509	FBtr0073222	2	1	1	84	3L	4204734	4204753	ACATTGAACTTGAACCTGAC		58	4205226	4205244	GATCGTACAGAGGCTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14995	FBgn0035497	FBtr0073272,FBtr0073271	3	2	4	160	3L	4096937	4096957	CCCATGTATAACACCATAACC		58	4095864	4095980	TGGTAGTATTCCTTCATCGA		57	NA	
Drosophila melanogaster	50	CG14971	FBgn0035449	FBtr0073143	2	1	1	66	3L	3469319	3469398	GTAATTGGAATCGAAGGTGC		59	3469272	3469290	CATTCGAAGTGTGGTTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996	3	6	15	82	3L	3083796	3085208	TCGCCACTTATATGGTCAC		59	3085252	3085272	ATATGGTGCATAGAAGTTGGG		59	NA	
Drosophila melanogaster	50	Shab	FBgn0003383	FBtr0072974,FBtr0110776,FBtr0072975	1	3	4	67	3L	2925425	2925443	GAAGTATCTGTGGGAGCTC		59	2925474	2940796	ATATCACTGCGATAACCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12093	FBgn0035372	FBtr0073015	2	1	1	69	3L	2773115	2773133	ATTAGCTACTCCCATCTGC		58	2773006	2773024	AATAGGTGCCATATTCAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	scf	FBgn0025682	FBtr0089942,FBtr0089940,FBtr0089941	3	3	3	60	3L	1299623	1299641	TGGTTATTTGAACGAGGAG		57	1299665	1299683	CGAATGATCGAAGTCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32335	FBgn0063667	FBtr0072636	1	1	1	60	3L	1202472	1202490	GGATGAACTCACTCAAGGA		58	1202430	1202448	AACACAATCCTCATTCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	thoc7	FBgn0035110	FBtr0072527,FBtr0072526	1	2	2	145	3L	212559	212635	TAGTGGAGATGAATGACGA		57	212367	212450	GTACATGATGGGATTGCTG		58	NA	
Drosophila melanogaster	50	5SrRNA:CR33354	FBgn0053354	FBtr0086346	1	1	1	62	2R	15653375	15653393	AATACATCGGTTCTCGTCC		59	15653331	15653349	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33410	FBgn0053410	FBtr0086402	1	1	1	62	2R	15632696	15632714	AATACATCGGTTCTCGTCC		59	15632652	15632670	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	emp	FBgn0010435	FBtr0072400,FBtr0072402,FBtr0072401	1	3	3	88	2R	20865282	20865300	GACAACATGTGCTTCTGTC		59	20865154	20865230	ATGGGAGAGTCGTATTGAC		58	NA	
Drosophila melanogaster	50	Eps-15	FBgn0035060	FBtr0072433	2	1	3	94	2R	20657197	20659257	CGACAATAAGAACCAGAGGA		59	20657122	20657140	CCTTCCGAGTTCCAATCTC		59	NA	
Drosophila melanogaster	50	sei	FBgn0003353	FBtr0072169,FBtr0072170	3	2	2	80	2R	19938359	19938378	GTTCCTAATCGATCTCGTGG		59	19938419	19938499	ATTAAGGTAGTTGTCTCGTCG		59	NA	
Drosophila melanogaster	50	CG30183	FBgn0050183	FBtr0072099	1	1	1	117	2R	19580472	19580490	GAACCGGAATCTTTCTCGT		59	19580315	19580392	GGAAGTATTATTGGGCACCT		59	NA	
Drosophila melanogaster	50	CG5431	FBgn0034888	FBtr0072080	1	1	2	80	2R	19571965	19571983	ATGTCCGGATACAAGAGGT		59	19572024	19572096	TTACTTCCGAGTGATCTTTCAG		59	NA	
Drosophila melanogaster	50	CG4019	FBgn0034885	FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103	1	4	4	213	2R	19495764	19495782	TCGAGTTCGTAATCACCTC		58	19495489	19495507	TAGATCCAGTTGCTCTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30193	FBgn0050193	FBtr0071948,FBtr0071949,FBtr0071946,FBtr0071944	2	4	7	76	2R	18813126	18814633	GGCTTATAATATTGTTCTGCGG		59	18814670	18814688	CTTGACATCCTTGGTCCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG30193	FBgn0050193	FBtr0071948,FBtr0113364,FBtr0071945,FBtr0071949,FBtr0071946,FBtr0071947,FBtr0071944	1	7	7	69	2R	18814926	18814944	TTGTATCGCAAATTCGTGC		59	18815045	18815063	CCTGATTCACGTACTCGTC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	PIP5K59B	FBgn0034789	FBtr0110862,FBtr0071900	2	2	3	166	2R	18767409	18767427	CTGGATACATTACTGGCGG		59	18767555	18768010	GTTAGTTGATCGAGATCACCA		59	NA	
Drosophila melanogaster	50	CG13530	FBgn0034777	FBtr0071915	3	1	1	167	2R	18664574	18664592	TCACCATTTCTCCTATGGC		59	18664084	18664443	TTTCGCAGATCATTTGGTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG13506	FBgn0034723	FBtr0071822	1	1	1	80	2R	18274024	18278495	CAACTATACGTGAGTTGTGC		58	18278538	18278556	GTACTCATACTCGTCGTCC		58	NA	
Drosophila melanogaster	50	Tango11	FBgn0050404	FBtr0071747,FBtr0071746	3	2	2	61	2R	17604978	17604996	GGGAGAAGATCGTCTACTG		58	17604935	17604955	CAGCCAGAATATTGTCTTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10307	FBgn0034655	FBtr0071671	3	1	1	79	2R	17577352	17577370	CGATCTACAGCTAATGGCT		58	17577471	17577489	GACCATCGCAAATATTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30287	FBgn0050287	FBtr0071695	1	1	1	112	2R	17425317	17425335	ATAATCATCGAACGTGGGA		58	17425109	17425179	AAACGCACTGTCAATTGAC		59	NA	
Drosophila melanogaster	50	CG13442	FBgn0034546	FBtr0086240	1	1	1	85	2R	16616808	16617429	TAATCCCGAACAACTCGTG		59	16616741	16616759	TGCTAATCCAACACTCCAG		59	NA	
Drosophila melanogaster	50	CG18065	FBgn0034519	FBtr0100677	3	1	1	84	2R	16439217	16439294	GCAATGAGATTATGCACCA		58	16439151	16439169	ATCTTCTGCAGATTCTGGT		58	NA	Nonspecific
Drosophila melanogaster	50	CG18067	FBgn0034512	FBtr0086216	1	1	1	60	2R	16422163	16422184	GAATATACAGCGAAATGAGGAC		59	16422205	16422223	TGATAGGAAGGTGTTTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7097	FBgn0034421	FBtr0086504,FBtr0086503	1	2	2	80	2R	15099768	15103930	CAAGAGCTTCATAGGTACG		57	15103972	15103992	CATAGTTGATTATAGCCACCC		57	NA	
Drosophila melanogaster	50	CG15118	FBgn0034418	FBtr0086590,FBtr0086589	2	2	5	126	2R	15024322	15024463	TCGACCAGAACGATAAGGA		59	15024214	15024232	TACTCATAGGTCGCATTGC		59	NA	
Drosophila melanogaster	50	CG15118	FBgn0034418	FBtr0086590,FBtr0086592,FBtr0086589,FBtr0113096,FBtr0086591	3	5	5	61	2R	15023834	15023852	CGCTCTTACATCTTCAAGG		57	15023724	15023742	GTATCGTGATCGATCTCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18605	FBgn0034411	FBtr0086571	1	1	1	62	2R	14865568	14865586	ATGTATCGGTGCTGATCAG		59	14865612	14865630	TCTTGATGGTCTCGTACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30114	FBgn0050114	FBtr0086753	1	1	1	71	2R	14095518	14095536	ATAATATTCGCAACCGCTG		58	14095571	14095589	TAATCAGCAGACTGTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lolal	FBgn0022238	FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778	1	4	4	80	2R	14042986	14043404	TCACAGATGTAACACTCGC		59	14042924	14042942	TAAAGTAGGGACTGCAAGC		59	NA	
Drosophila melanogaster	50	CG14487	FBgn0034272	FBtr0086865	2	1	1	60	2R	13632114	13632132	CAACCATATTCGACAAGGA		57	13632156	13632174	TCGGGCATAACAGTAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33459	FBgn0053459	FBtr0089859	1	1	1	81	2R	12376135	12376226	GAATATACAGTTGCCATTCGTC		59	12376268	12376286	CTACAGAATCCACAAGCCA		59	NA	
Drosophila melanogaster	50	Dg	FBgn0034072	FBtr0087258,FBtr0087257,FBtr0087256	1	3	3	100	2R	11972593	11972678	TTTATGGCCTACCTCTGGA		59	11972511	11972529	ACTTATCTCCACGGTTTCC		58	NA	
Drosophila melanogaster	50	CG8397	FBgn0034066	FBtr0087261	2	1	1	123	2R	11903960	11904043	GAGAGCAGTGGAAGATCAC		59	11903855	11903874	TCGATCTCCTTCTTTGTCTC		58	NA	
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	2	5	7	81	2R	11836642	11836721	TTTGCTACGTGCTACTCTC		59	11836579	11836599	TCCGCTCTAGTTATATTCGAG		58	NA	
Drosophila melanogaster	50	CG12970	FBgn0034047	FBtr0087289,FBtr0087288	2	2	2	60	2R	11744153	11744171	AGGTGATGGAGATTATCGG		58	11744194	11744213	TTCTGGAGACGATCAAACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30084	FBgn0083919	FBtr0113484,FBtr0111048,FBtr0100387,FBtr0087315	3	4	6	157	2R	11652754	11660560	ATAATGTGTACCGAGGTGC		59	11651322	11652635	GATAAAGGGTCCTCTGATCTG		59	NA	
Drosophila melanogaster	50	mus210	FBgn0004698	FBtr0087373,FBtr0087374	1	2	3	111	2R	11200223	11200241	AAGTCAACGCGAATAAAGC		59	11200316	11202134	ATAGATCTGCATCTGCCAC		59	NA	Nonspecific
Drosophila melanogaster	50	mRpL41	FBgn0034001	FBtr0087400	2	1	1	60	2R	11104807	11104825	TTCCGGACATCATAGTTCC		58	11104765	11104783	TTATAGGACACGTATGGCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10249	FBgn0027596	FBtr0087429,FBtr0112929,FBtr0087431,FBtr0087430	1	4	4	88	2R	10790219	10790298	GACAGTAATGGCAACACAG		58	10790149	10790167	TCGCAAACCTTAGAATCCA		58	NA	
Drosophila melanogaster	50	shot	FBgn0013733	FBtr0087620,FBtr0087618	1	2	6	126	2R	9789035	9789056	TATCGGGCTTATGAAGAATCTC		59	9770041	9788951	GAATACTGCTTGATCTAGTTCG		58	NA	
Drosophila melanogaster	50	drk	FBgn0004638	FBtr0087693,FBtr0087697,FBtr0087698,FBtr0087696,FBtr0087694,FBtr0087695	2	6	6	81	2R	9385034	9385133	TCTCCTTATCAGTCAAATGCC		59	9384973	9384991	ACCCAGAGGAAGAATTTGC		59	NA	
Drosophila melanogaster	50	CG17059	FBgn0040754	FBtr0087739	2	1	1	95	2R	9107891	9107909	AAACATGAAACCGTCTCTG		57	9108278	9108296	ATCATCATTCCTGTGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13148	FBgn0033767	FBtr0087848,FBtr0087847	3	2	2	114	2R	8575267	8575285	GTAGCTTTACAGAGGGCAG		59	8575421	8575439	TTATGCCACTTCTTCTGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	nemy	FBgn0033765	FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875	2	6	6	194	2R	8558847	8559072	AAGCGGATGAGGAAATCTG		59	8558671	8558690	CTCTGTACGCTTATAGTCCC		59	NA	InUTR
Drosophila melanogaster	50	fdl	FBgn0045063	FBtr0087946,FBtr0087947	2	2	2	131	2R	8376192	8376277	GAAAGAAGCAGGTACTGGG		59	8376079	8376098	GATCATCGCTAGGATCAGTC		59	NA	
Drosophila melanogaster	50	CG8290	FBgn0026573	FBtr0088041	1	1	2	80	2R	7861949	7861968	ATTCAACAGTATTGACGAGC		58	7862011	7862111	TACTCGCAAGCATAATTGG		57	NA	
Drosophila melanogaster	50	pyr	FBgn0033649	FBtr0113070	3	1	1	176	2R	7611521	7611808	CTGGTTGGAAAGAGAAACG		58	7611946	7611966	CAATATGGCCTTCTTCATCAC		59	NA	
Drosophila melanogaster	50	ix	FBgn0001276	FBtr0088154	1	1	1	60	2R	7247233	7247251	GAGATCCACTTGAAGACGG		59	7247191	7247212	GATAGTGATTGGAGGAGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12391	FBgn0033581	FBtr0088205	3	1	1	60	2R	7036371	7036390	CATCTGTCCTAATGTCTCGA		58	7036330	7036348	CTTGGTGCATATGAATTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	3	12	12	93	2R	6499952	6500255	GCATATGGACATGTATAACTCG		58	6500309	6500327	ATTCGTATAGTGCGGTTCC		59	NA	
Drosophila melanogaster	50	CG11777	FBgn0033527	FBtr0088273	1	1	1	80	2R	6356435	6356716	CCATTAAGCACACTGATCG		58	6356760	6356778	AGGTAATGAAGAACTGGCT		58	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	3	9	9	198	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349188	6349206	CTTAGTACAGTCCACAGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414	2	10	10	71	2R	5991854	5991872	TGTCGACAGTCGATAAGGA		59	5991904	5992232	TATCATCGTAACGTTCTGACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414	2	10	10	71	2R	5991854	5991872	TGTCGACAGTCGATAAGGA		59	5991904	5992232	TATCATCGTAACGTTCTGACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Pka-R2	FBgn0022382	FBtr0088438,FBtr0088437,FBtr0088439	2	3	5	218	2R	5885776	5885794	GAACGCATCATCAAACAGG		59	5884113	5885213	CTTGACATCGAGGAATGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	3	9	9	68	2R	5738998	5739016	CTTTGAGTTGAATGGCCAG		59	5738880	5738966	ACATGGATCTCCTTAACGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1663	FBgn0033449	FBtr0088477	2	1	1	60	2R	5725284	5725304	GTCGCTATCCAAAGTACTACC		59	5725326	5725344	ACTGATATGTGGTTCGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or45b	FBgn0033422	FBtr0088519	2	1	1	81	2R	5447862	5447939	GCCAATAAGAGATCCCTCG		59	5447984	5448002	TATCTCATTGTGGCGATCC		59	NA	
Drosophila melanogaster	50	CG8029	FBgn0033393	FBtr0088587,FBtr0088588	2	2	2	212	2R	5095662	5095680	CAAGACCTACTACACCAGC		59	5095928	5095946	TTGCTGATAGCAGCTATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30381	FBgn0050381	FBtr0113374	1	1	2	106	2R	3818098	3818176	CGTTTGAAGAGGTTAAATGC		57	3818011	3818029	GTAATCTTTGGTGTACCGC		58	NA	
Drosophila melanogaster	50	mus205	FBgn0002891	FBtr0088831	3	1	1	159	2R	3681476	3681494	TTCCGTATGACAAGAAGGA		57	3681617	3681692	TAGCCATAGAAGGGTATGC		58	NA	
Drosophila melanogaster	50	esn	FBgn0028642	FBtr0089039,FBtr0089038	1	2	2	161	2R	3012688	3012927	TGCGATGAGATCATCTTCTC		59	3013051	3013069	GAACATTGTGTCGAAGCAG		59	NA	
Drosophila melanogaster	50	pgant3	FBgn0027558	FBtr0089061	2	1	1	120	2R	2945818	2945893	TACGACATGGATACTCAGC		58	2945716	2945734	AGTCGCATTCCATACTGAG		59	NA	
Drosophila melanogaster	50	CG33558	FBgn0053558	FBtr0113470	2	1	2	148	2R	2814317	2816022	ACTTTGACGACTATGCCAC		59	2814187	2814205	GTTGATGAGATTTCGCACG		59	NA	
Drosophila melanogaster	50	CG14593	FBgn0033058	FBtr0085975	2	1	1	94	2R	1952490	1952508	GACATCAAGTCCTACCCTG		59	1952565	1953388	ACCATGAACTTTGCATACTC		58	NA	
Drosophila melanogaster	50	CG11163	FBgn0025693	FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053	3	4	4	80	2R	1662572	1662645	TGCATCTCGTTACAGACTC		59	1662510	1662530	TATATCTTGGGCTGGATACGA		59	NA	
Drosophila melanogaster	50	CG40005	FBgn0058005	FBtr0111236,FBtr0111235	2	2	2	60	2L	22842481	22842499	TGATAGCTCCGTAACATCC		58	22842439	22842457	AAGAACTTGATCGAACTCC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3651	FBgn0032974	FBtr0085937	1	1	1	106	2L	22123585	22123603	CAGCTTAATAGCAACCGGA		59	22123673	22123750	GATTGAGGAGCTGTAGACC		59	NA	
Drosophila melanogaster	50	CG15219	FBgn0040519	FBtr0085944	2	1	2	138	2L	22105223	22105241	GAGTAATTGCGGACAAGGT		59	22105055	22105122	TTCCATTGGAGAGTAAAGCC		59	NA	
Drosophila melanogaster	50	CG41435	FBgn0084002	FBtr0111261	3	1	1	90	2L	22055935	22055953	TTTAATGGACGAATGCGAG		58	22056007	22056910	CGTCCTCATTAAACTGGGA		58	NA	DesignRelaxed
Drosophila melanogaster	50	sick	FBgn0085372	FBtr0112547	3	1	3	185	2L	19928973	19928994	CATATCCCAAGAAGAATGACGA		59	19929343	19950416	GTGAACTTACATTGGTTGACAG		59	NA	
Drosophila melanogaster	50	spi	FBgn0005672	FBtr0081271,FBtr0081269,FBtr0081268,FBtr0081270,FBtr0100597,FBtr0081272,FBtr0081267	2	7	7	63	2L	19568717	19568735	CCTGGTACTGTTTGAACGA		59	19568672	19568690	CTGTAAACCGGTAGATCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	amd	FBgn0000075	FBtr0081153	3	1	2	288	2L	19110628	19110646	AGTCCTTGGATTCAGTTGG		59	19113045	19113063	AATGCAGCTGTTACTCTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31742	FBgn0051742	FBtr0081025	2	1	1	60	2L	17991189	17991210	GTATATCATGCTACCATGACAG		58	17991229	17991249	CCATGTGATATAGTCTCACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080898,FBtr0080895,FBtr0080903,FBtr0080902,FBtr0080901,FBtr0080896,FBtr0080899,FBtr0080900	1	8	13	84	2L	16771130	16771351	CCGGTGTTAAAGACATTTGTC		59	16771397	16771415	ATACTGGCTACAGTGACCT		59	NA	
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080878,FBtr0080876	1	3	7	188	2L	16483962	16483981	TCTGCATACGGTTTATACCA		58	16481537	16483811	TTGATCGATAGGCATCTGG		58	NA	
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876	2	7	7	116	2L	16467746	16468063	AAACTATTCCGAATCCCTGG		59	16467649	16467667	TTCTTGTAGTATGCCGTCG		59	NA	
Drosophila melanogaster	50	CG34168	FBgn0085197	FBtr0112359	3	1	1	208	2L	16135165	16135183	CTACTTCCGTAATCAGGCT		58	16134908	16134926	AACAATGTCCACCATACGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CycE	FBgn0010382	FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775	2	5	5	97	2L	15729492	15729577	TACATTTAGTCGGGAGATGG		58	15729414	15729432	AGATCACTCGGAAGAATGG		58	NA	
Drosophila melanogaster	50	CG15279	FBgn0028886	FBtr0080686,FBtr0080685	3	2	3	186	2L	14847047	14848681	GATGAAAGGTGTTGGAGCT		59	14846879	14846897	AGACCAATTACTCGCATCG		59	NA	
Drosophila melanogaster	50	rk	FBgn0003255	FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610	1	4	5	131	2L	13991706	13992947	GTGGTCGTCCTAGATTTGG		59	13991010	13991029	ATAGAATGCATTGGGATCCA		58	NA	
Drosophila melanogaster	50	CG9008	FBgn0028540	FBtr0080577,FBtr0080576	2	2	2	154	2L	13775381	13775399	GAATCCTTGGATCGATCGA		58	13775038	13775266	CGATGATAATCTGAAGGATCTG		58	NA	
Drosophila melanogaster	50	ab	FBgn0000011	FBtr0080204,FBtr0080203	1	2	2	201	2L	11258905	11258989	AGAATACATTCGGCATGGG		59	11259154	11259172	ATCGGCTCAATGGTTAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	dUTPase	FBgn0013349	FBtr0080157,FBtr0080156	2	2	2	86	2L	11011760	11011778	TCGTCCTGTTCAATCACTC		59	11011828	11011846	GATAGAAGATACGCTCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Art8	FBgn0032329	FBtr0080162	3	1	1	62	2L	11010050	11010068	AAATCACAATGAAGCGCAG		59	11010006	11010024	CTAGCAAATCCACCTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486	2	9	10	161	2L	10831341	10831359	TGTCACAGGATTATCGGTC		58	10826070	10830602	TCGAGCAGGAAAGAATCTC		59	NA	
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486	1	9	10	160	2L	10831340	10831358	GTCACAGGATTATCGGTCG		59	10826070	10830602	TCGAGCAGGAAAGAATCTC		59	NA	
Drosophila melanogaster	50	CG5037	FBgn0032222	FBtr0079992	3	1	1	112	2L	10332576	10332594	CTATTGTCGGACTTTCAGC		58	10332670	10332752	ATGAAACTTGTACGCAAGG		58	NA	
Drosophila melanogaster	50	CG5640	FBgn0032207	FBtr0080077,FBtr0080075,FBtr0080076	3	3	3	80	2L	10275747	10275765	TGCTTTCCTAGCATATCGC		59	10275618	10275705	TGATATAAGACGCCGATTGAG		59	NA	
Drosophila melanogaster	50	Dh31	FBgn0032048	FBtr0079700,FBtr0079699	3	2	2	72	2L	8493009	8493027	TCATGGAACTGATGACTCG		59	8492791	8492974	GTTCGTTTGGAATTCTCCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13384	FBgn0032036	FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079658	3	4	6	228	2L	8385087	8386225	ATACAGTCAGTATTCCCGAG		58	8386516	8386535	TTATAGGACTTATCCGTCGA		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CSN8	FBgn0028835	FBtr0079646	1	1	1	80	2L	8365313	8365394	GTGGAGGATCTTCTAAATAAGC		58	8365435	8365453	ATTGTGCTGGTAAATGGAC		57	NA	
Drosophila melanogaster	50	Btk29A	FBgn0003502	FBtr0079616,FBtr0112836,FBtr0079617	1	3	6	140	2L	8298082	8298100	TTCAGCTACTTCGATGTGG		59	8284050	8284128	TTGGAACGGATAACCATCC		59	NA	
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079623	3	1	4	94	2L	8244491	8244644	AGCGTTGTGTAAACCTCTC		59	8244415	8244433	AAACTCGGTGTTCTTCTCG		59	NA	
Drosophila melanogaster	50	CG8372	FBgn0032000	FBtr0079634,FBtr0079633	1	2	2	61	2L	8212168	8212186	TTATTAAGACCTGGCTGCC		59	8212125	8212143	ATAGATGCCCAGAATGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8455	FBgn0031997	FBtr0079588,FBtr0079587	1	2	2	89	2L	8200026	8200113	TTATGCTGGCCACTATAACC		59	8200162	8200183	CACTCAGATAGCTATTGAAGAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5973	FBgn0031914	FBtr0079446,FBtr0079448,FBtr0079447	2	3	3	127	2L	7444741	7444759	GATCTCCCATATTGAGGCG		59	7444849	7444935	TGTCAGCCAGTTCATAATCC		59	NA	
Drosophila melanogaster	50	DLP	FBgn0031820	FBtr0079260	3	1	1	73	2L	6486099	6486177	ATGAAGAGAATCGCCTACG		59	6486213	6486232	TAAAGATCATTCTTTCGGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG9144	FBgn0031773	FBtr0079215	2	1	1	91	2L	6063890	6063908	ACTCGGATGTGGTTAACAG		59	6063763	6063835	TCGCCAGACCTTAATTGTG		59	NA	
Drosophila melanogaster	50	ade2	FBgn0000052	FBtr0079220,FBtr0079219	1	2	3	116	2L	6044340	6044435	CATTCCAGGTTACAAACAGC		59	6044243	6044261	TTATTTCCGTAGTCGGAGG		58	NA	
Drosophila melanogaster	50	CG11030	FBgn0031736	FBtr0079135	2	1	1	93	2L	5759281	5759299	AGCCCGTTTATTACGATGG		59	5759356	5759440	AGCATGGAAGACGTAATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14011	FBgn0031722	FBtr0079118,FBtr0079120,FBtr0079119	3	3	3	85	2L	5580631	5580649	AGTCAACTCATTGGACGAG		59	5580564	5580582	TTGTCTTGGTCGACTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tutl	FBgn0010473	FBtr0089269,FBtr0089270,FBtr0089268,FBtr0089271	2	4	4	174	2L	4295611	4299075	CAATATTCCAGAAGACGCC		58	4303359	4303377	CGGATAGCTCTCATACCAG		58	NA	
Drosophila melanogaster	50	Gr23a	FBgn0041248	FBtr0077702	2	1	2	183	2L	2671791	2671867	AAAGCTATAATCTAGGCCGG		59	2672012	2672086	GCTGCAAACATACTACTCAG		58	NA	
Drosophila melanogaster	50	CG34172	FBgn0085201	FBtr0112363	3	1	1	122	2L	2192827	2192848	CAGTTACATAAGAGACCTAGGC		59	2192664	2192682	AAATCTTATCCGCAGGTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	lectin-22C	FBgn0040105	FBtr0077859	1	1	1	60	2L	2033699	2033718	CAACTATCAAAGTGGCTCTG		58	2033658	2033676	CAGTACGTGAGGAAGAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33128	FBgn0053128	FBtr0077930	2	1	1	60	2L	1495204	1495223	TTACATCCAAACCTACACCG		59	1495246	1495264	GATATCGGTGAAGGTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	a5	FBgn0011294	FBtr0077922	3	1	1	60	2L	1329683	1329701	ATAAGCTGGACTTTGACGA		58	1329724	1329743	AAATTACTATGACCATCGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GluRIIC	FBgn0046113	FBtr0078026,FBtr0078027	3	2	2	140	2L	917374	917471	CTTTGGAAGAAAGGCTCAC		58	917575	917593	TATCCAATGATCTTCGCGG		59	NA	
Drosophila melanogaster	50	Plc21C	FBgn0004611	FBtr0078047,FBtr0078048,FBtr0078051,FBtr0078050	1	4	5	96	2L	344409	344427	GAAATCCAGTCCGCTAGAG		59	344484	344570	CGGAGAAAGACAATTAAGACTC		58	NA	
Drosophila melanogaster	50	CG3625	FBgn0031245	FBtr0078136,FBtr0078135,FBtr0113009	2	3	3	117	2L	284780	284798	TATCGACAGGGAGCTAGTC		59	284144	284162	GTACGAGATGAACAGCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11376	FBgn0031216	FBtr0078103	1	1	1	80	2L	97767	97787	CAATTAAGCGAATCGTACACC		59	97828	97897	ATCTATGGACAGCTCTTTGC		59	NA	
Drosophila melanogaster	50	l(2)gl	FBgn0002121	FBtr0078166,FBtr0078171,FBtr0078170,FBtr0078167,FBtr0078168,FBtr0078169	1	6	6	80	2L	14976	14996	ATTATGTGCCTTATGGACCTG		59	14858	14937	CAATTACATCGTTGGATCTTCG		59	NA	
Drosophila melanogaster	50	CG40500	FBgn0069968	FBtr0111196	3	1	4	160	X	22291650	22291670	GATACAGTTGTGTTCACAGGA		59	22292859	22294276	TTGTCAAGGATTGACTGGG		59	NA	
Drosophila melanogaster	50	CG17601	FBgn0031197	FBtr0077361	1	1	1	69	X	21949467	21949485	CTAGAGGTTGACATGCTGG		59	21949518	21949536	GATTCTTGGCATTCTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15446	FBgn0031155	FBtr0077261	3	1	1	117	X	20972940	20973054	CGAAGCTGCTAGAATTATCCA		59	20972843	20972861	CATTTGGCGATACGAAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	xmas-2	FBgn0028974	FBtr0074404	1	1	1	88	X	17051534	17051613	AGTATGAGTTGGTGGAAGTG		59	17051465	17051483	ATTGAGGTAGAGGTCTCGT		59	NA	
Drosophila melanogaster	50	CG4756	FBgn0030788	FBtr0074331	1	1	1	62	X	16682326	16682344	ACTTCAAGGTCCAAACGAG		59	16682367	16682612	GTTTCATAATTGTATCCGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9123	FBgn0030629	FBtr0074019	3	1	1	137	X	15235279	15235297	CAACATTGCCTGGATTTCC		59	15235007	15235119	ACTTTGATTTGACCAGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14406	FBgn0030595	FBtr0073977	3	1	1	100	X	14804732	14804750	GATGTGATAACAGGAACGG		57	14804344	14804668	CTTAGATCCGATGGATCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11095	FBgn0030528	FBtr0073827	1	1	1	71	X	13706075	13706159	GCACGAATGAAATATCCCT		57	13706194	13706212	AGGAGATCTGAAAGCTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1745	FBgn0030301	FBtr0073500,FBtr0073499	1	2	2	81	X	11349154	11349172	TATTAATCCGGTGGACACC		58	11349217	11349325	CTCCAGGAGGTCATTTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sev	FBgn0003366	FBtr0073393	2	1	1	85	X	10972705	10972723	ACTTAGCCGATTACGACTG		59	10972572	10972657	AAATCGGAACCTGTATTGTG		58	NA	
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0071296,FBtr0112965,FBtr0071294,FBtr0071298,FBtr0071295,FBtr0071297	3	6	6	108	X	9009732	9009803	CAATGTAGTAGTGCCTCCA		58	9009875	9009893	CATATAGATGCGCATGCAG		58	NA	
Drosophila melanogaster	50	l(1)G0155	FBgn0026664	FBtr0071093	3	1	1	122	X	7814714	7814732	CAAACTATTCGCGTTGAGC		59	7814817	7814925	AAAGTCATGAACTCGTTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10804	FBgn0029663	FBtr0070592,FBtr0114487	3	2	3	117	X	3373349	3373427	AATAGTGCTTCCGGAACAG		59	3373250	3373268	CGATTCCCAGGGTAAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Actn	FBgn0000667	FBtr0070343,FBtr0070344,FBtr0070345	1	3	3	105	X	1924397	1924489	ATCTGTCGTTCAAGGATGG		59	1924310	1924329	AGATTCTCCAGAGGATTGTC		58	NA	
Drosophila melanogaster	50	CG34320	FBgn0085349	FBtr0112522	2	1	1	75	X	1057904	1057922	ACTACTCGTAGATCGGAGG		59	1057743	1057761	AAACGAATGCATTTCCTCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17691	FBgn0039993	FBtr0113759,FBtr0113758,FBtr0113761	1	3	4	71	U	1179200	1179275	GGTGTTCAGTAAATCTACGG		57	1179309	1179327	TTCCTTGCTCACATAAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sphinx	FBgn0083990	FBtr0111044	3	1	3	93	4	996101	996121	CGAGAGTACTATTAATGCGAG		57	996176	997397	TACACAAGATGGAGAAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1890	FBgn0039869	FBtr0085836	1	1	1	84	3R	27569554	27569627	GAGAAGACTGCAGAAGGAG		59	27569672	27569693	CTTCTTATACGAATCTGTCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fer2LCH	FBgn0015221	FBtr0085622,FBtr0085624,FBtr0085623	1	3	3	71	3R	26214996	26215017	GATGAATATTGCCAGAACACTG		59	26215049	26215435	ATTACAAATGGAGTTGGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trc8	FBgn0039668	FBtr0085431,FBtr0085430,FBtr0085432,FBtr0085429	2	4	4	94	3R	25325969	25326048	CTGCTATCAGGAAATGTATTCC		58	25325896	25325914	AACGATCCTGAACGTACAG		59	NA	
Drosophila melanogaster	50	CG11839	FBgn0039271	FBtr0084766	2	1	1	109	3R	20895743	20895911	AGCATTGGTTTCCTTAACTG		58	20895982	20896001	TTATATGCACCTTCCAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34349	FBgn0085378	FBtr0112558,FBtr0112559	3	2	2	84	3R	20889764	20889782	TATCTTTCGCAGATCTGGA		57	20889827	20889909	GATTCGGAATCTGTATACTCTG		57	NA	
Drosophila melanogaster	50	CG5768	FBgn0039198	FBtr0110867,FBtr0084620	2	2	2	113	3R	20212174	20212192	CTATAATGGACGTGACTGC		57	20212017	20212097	TTTGGCAAGCTGAATATGG		58	NA	
Drosophila melanogaster	50	CG10830	FBgn0038839	FBtr0083986	2	1	1	287	3R	16722461	16722479	TTAAGTTCCGGAAGCTGTC		59	16722192	16722211	ACTCATTGTAGTGGTTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11407	FBgn0038733	FBtr0083790	3	1	1	113	3R	15607737	15607807	TCCAGTCATTCCTTAACCA		57	15607884	15607902	TATAATACGCTTGGTGCTG		57	NA	
Drosophila melanogaster	50	CG8774	FBgn0038136	FBtr0082740,FBtr0082741	1	2	2	135	3R	9125212	9125230	TAACTTTGACGGAAGAGCT		58	9125329	9125481	GAAATGGTTCTGGTAGCTC		57	NA	
Drosophila melanogaster	50	CG14693	FBgn0037837	FBtr0082300,FBtr0082301	1	2	2	116	3R	6638726	6638802	CTCCAGTGTCTGAATATAAAGG		57	6638631	6638649	AAATGTTGATCTCACGGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34360	FBgn0085389	FBtr0112576,FBtr0114582,FBtr0114583,FBtr0112577	3	4	5	263	3R	5769244	5769262	ACTATCTGGAAACATGCCG		59	5769578	5769596	TGTAGTCGATGACAATGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	hyd	FBgn0002431	FBtr0082090	1	1	1	85	3R	5540875	5540954	CAGGATTTGGTTTACTTCTGG		58	5540810	5540828	CTTATGGTGACAGATGGCA		59	NA	
Drosophila melanogaster	50	CG9356	FBgn0037688	FBtr0082048,FBtr0082047	3	2	2	158	3R	5228689	5228707	ATGTAATCAGCCTAAGTGC		57	5228480	5228567	TAATGAATTCCAAGGCCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17919	FBgn0037433	FBtr0081711	2	1	1	75	3R	2169965	2170264	GTTAAAGGTCACGTACAGC		58	2170303	2170321	CTGATCCTTAACCTGGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi4	FBgn0037412	FBtr0078615	3	1	1	73	3R	2045634	2045944	AAAGATGATGTACCAGTTCCC		59	2045581	2045599	CTCCATGAAGCGGATAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12581	FBgn0037213	FBtr0078961,FBtr0078962	3	2	2	159	3R	8508	8527	ATTAGCACAGTCCCTAATCG		59	8648	9456	GTTTAAATGTCCTTTGCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	mael	FBgn0016034	FBtr0089631,FBtr0089633,FBtr0089632	2	3	3	118	3L	22718018	22718092	AGATGTCCCATGATCTGGA		59	22718174	22718192	CAACGAATATTCGCATGCC		59	NA	
Drosophila melanogaster	50	Ten-m	FBgn0004449	FBtr0078509,FBtr0112842	3	2	2	142	3L	22294409	22295907	CCTTTAACGAAAGTCGATCAG		59	22294287	22294305	CATTAGGTCGAACCATCCA		59	NA	
Drosophila melanogaster	50	CG5976	FBgn0036999	FBtr0078200,FBtr0078199	3	2	2	68	3L	20468596	20468682	AGATATCCTACAATCCCAGC		58	20468712	20468731	GCTTATCGGATAGATTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14087	FBgn0036868	FBtr0074996	2	1	1	61	3L	19380826	19380844	ACAAGCAGGATGAATTCCA		59	19380869	19381039	CTTTGGGTCACGTCTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18231	FBgn0036796	FBtr0075104	2	1	1	80	3L	18601499	18601573	CATATTCGGCATGATCAAGTC		59	18601615	18601633	GCCTTATTCAGAGCTTCGT		59	NA	
Drosophila melanogaster	50	CG13467	FBgn0036455	FBtr0075696	2	1	1	101	3L	14897987	14898006	ATATGTGTTCTCCATGGACG		59	14898070	14898221	CACACTAACTTGAAGGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsc70-1	FBgn0001216	FBtr0075761,FBtr0075762,FBtr0075763	2	3	3	60	3L	13970261	13970279	GGAATACTCAATGTGACGG		57	13970301	13970321	TGATAGTGATACGGTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14113	FBgn0040814	FBtr0075837	3	1	1	92	3L	13322332	13322402	AGAGGTATACACGGAGGAG		59	13322457	13322476	TATCTGAGTGCATACTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PGRP-LC	FBgn0035976	FBtr0089490	3	1	3	214	3L	9338151	9338710	AAAGACGTTGAACCAAACG		59	9338955	9338973	CCATGTGAAACGATTGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6416	FBgn0035917	FBtr0089564,FBtr0089566,FBtr0089565,FBtr0089562	3	4	8	141	3L	8623725	8627690	TTCAATACCAACCCTACCG		58	8627795	8627813	CTGTCATGGTAGTCGTGTC		59	NA	
Drosophila melanogaster	50	CG6683	FBgn0035902	FBtr0076655	1	1	1	109	3L	8507732	8507808	ATTCAGAAGCTAGTGCCTG		59	8507641	8507659	CAGAAGACTCCAATCGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13670	FBgn0035873	FBtr0076708	2	1	1	196	3L	8314151	8314169	CTATGCAAGATTCGAGGGT		59	8314329	8314905	GATCGACTACGCTGTACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Srp9	FBgn0035827	FBtr0076750	3	1	1	69	3L	7929587	7929605	AAGAACTGGGATGATTTCG		57	7929638	7929656	TAAGTCGACAGTTCTGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8620	FBgn0040837	FBtr0076918	2	1	1	264	3L	7151308	7151328	GTGAATTTCTTATCGGGTCAG		58	7151554	7151572	AGAGTTGAGATTCCTGCTG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	melt	FBgn0023001	FBtr0100141,FBtr0076917	2	2	2	90	3L	7135157	7135240	GTTTCCTCAGGTTAAGGACC		59	7135293	7135311	CTTGTCTGTCTTGGAGACC		59	NA	
Drosophila melanogaster	50	CG13296	FBgn0035687	FBtr0076997	2	1	1	63	3L	6156741	6156759	TTCTCCTTATGGGCATTCC		59	6156785	6156932	CACATGTAGCGACTATTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12027	FBgn0035585	FBtr0073372	3	1	1	123	3L	5011903	5011921	CTGAAGGAAGTCACTGAGC		59	5011743	5011818	GTAGATCATCAACCGAAATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33514	FBgn0053514	FBtr0091456	3	1	1	61	3L	4365740	4365759	CGGACTATTTCCGAGTTACC		59	4365783	4365860	ACCCGTTTGATGAATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scrt	FBgn0004880	FBtr0073165	1	1	1	85	3L	3985479	3986530	ATGTTTACAACGGCTACAC		58	3986579	3986597	GATCACGGTTATCTCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13907	FBgn0035173	FBtr0072593	2	1	1	60	3L	879209	879227	CACCATGTTGGATGTTAGC		58	879167	879185	ATTCGAGACTCCGATAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	thoc7	FBgn0035110	FBtr0072527,FBtr0072526	2	2	2	81	3L	212492	212512	GAGGATCGGAGAATAGTAGTG		58	212366	212449	CGTACATGATGGGATTGCT		59	NA	
Drosophila melanogaster	50	gsb	FBgn0001148	FBtr0072444	2	1	1	172	2R	20949718	20950767	CTTTCAAGGACAAGGTCGT		59	20950901	20950921	GGTTTAGAATCTTTGAGACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4324	FBgn0034956	FBtr0114534,FBtr0072197	1	2	2	114	2R	19903665	19903743	GTTCCACAGTCAGTTACCT		58	19903511	19903529	CTAGGACCACTTCAAAGCA		59	NA	
Drosophila melanogaster	50	CG3906	FBgn0034871	FBtr0072121	2	1	1	219	2R	19399297	19399316	CTTCCATTGCATCATACTGC		59	19399006	19399115	GTTAATGTTGGCCTTGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30190	FBgn0050190	FBtr0113362,FBtr0113363,FBtr0071950	2	3	3	120	2R	18817485	18817503	TGAGGCCAAGAAATCAGAC		59	18817586	18817724	ATGTTGTAGTTGAAATCGCC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	px	FBgn0003175	FBtr0112821,FBtr0112820	1	2	3	83	2R	18428467	18430837	AAGGCATCTCATAAACCGG		59	18428402	18428420	AACGAAAGTGGTTCTTTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13492	FBgn0034662	FBtr0071741,FBtr0071742	2	2	2	93	2R	17715211	17715301	AGACACGCATCATAAGTGG		59	17715136	17715154	CAGTTTCCTGTTCCATCGA		59	NA	
Drosophila melanogaster	50	sli	FBgn0003425	FBtr0087303,FBtr0087304,FBtr0112832,FBtr0087302,FBtr0112831	2	5	5	98	2R	11764742	11764760	GACATCGGAGCTGTATCTG		59	11764593	11764680	TTGTTGCTGAGATCGAGTC		59	NA	
Drosophila melanogaster	50	Cyp6a22	FBgn0013773	FBtr0087450	3	1	1	61	2R	10760328	10760346	TATGATTCCATGCAGGAGC		59	10760371	10760456	TACTTCCGAAGGGTTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13331	FBgn0033850	FBtr0087672,FBtr0087673	2	2	2	277	2R	9409608	9409821	AGAAGACCAGACTGAGAGG		59	9410061	9410080	GTGTTCCATGTTATAGGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hr46	FBgn0000448	FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367	2	4	4	111	2R	6095624	6095704	CAATTTCCGCGATATTTCC		57	6095531	6095549	CGAATCTATCGAGAACAGC		57	NA	
Drosophila melanogaster	50	Mef2	FBgn0011656	FBtr0088444,FBtr0088443,FBtr0088447,FBtr0088445,FBtr0088446	2	5	6	89	2R	5806136	5806225	TATGCAGATCAACGACAGAG		59	5806066	5806084	AAAGGAATAGCTCGTGAGG		59	NA	
Drosophila melanogaster	50	Vang	FBgn0015838	FBtr0088566	2	1	1	129	2R	4991311	4991396	TAATATGACAGGAGACGGC		58	4991489	4991507	CATTGAGATGCTTTGCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8635	FBgn0033317	FBtr0088727	3	1	1	129	2R	4518513	4518590	CCACCACGGATATTATTTGC		59	4518403	4518421	TTCAGCACATATCCAGCTG		59	NA	
Drosophila melanogaster	50	CG30373	FBgn0050373	FBtr0088806	2	1	1	60	2R	4051709	4051727	ACTTGTACGAGCATGTCAG		59	4051667	4051687	TTGTACCTGTAGTTGACAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Odc2	FBgn0013308	FBtr0088864	3	1	1	111	2R	3896299	3896374	TGGATAAGATATCGGACTTGC		59	3896445	3896465	TCGAATCCATTAAAGGGACTG		59	NA	
Drosophila melanogaster	50	CG12824	FBgn0033222	FBtr0088830,FBtr0113050	3	2	2	293	2R	3678002	3678080	GGAATTATCCTACGCATTTGG		59	3678388	3678406	ATAGAATGCCATTCCGAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	scw	FBgn0005590	FBtr0081261	2	1	1	61	2L	19700827	19700845	CGAGATGCCCATATACCAG		59	19700784	19700804	CCAGGATATCAATCATCTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10337	FBgn0032805	FBtr0081276	2	1	1	71	2L	19546119	19546203	GGTATAATCGGTTGTGCTC		57	19546066	19546086	GCCACTGTTGATGAAATACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CadN2	FBgn0032655	FBtr0081012,FBtr0110886	1	2	2	80	2L	17789384	17789403	CACTGCAAATACCAATCAGC		59	17789245	17789343	TCATCACGGGATAGATTATGG		58	NA	
Drosophila melanogaster	50	CG5888	FBgn0028523	FBtr0080880	2	1	1	147	2L	16404602	16404620	AGTATCTGGACCACTTTGC		59	16400514	16404491	TCCTCAACGGGATATTCCT		59	NA	
Drosophila melanogaster	50	CG4930	FBgn0028515	FBtr0080824	1	1	1	60	2L	16258165	16258252	GAGAAAGTAGCACAGAACG		58	16258275	16258294	TTTGGTAATCCTTAACGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33648	FBgn0053648	FBtr0091625	3	1	1	178	2L	14524982	14525054	CGTAAGTATAGTTGAGTTCACC		58	14525252	14525273	CATTATATCGCTTGTATAGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7364	FBgn0028541	FBtr0080532	2	1	1	108	2L	13773314	13773392	GCTATACGGGTCTTATGGT		58	13773464	13773482	TAGTCGATCTTCACAGCTC		58	NA	
Drosophila melanogaster	50	CG7311	FBgn0028848	FBtr0080530,FBtr0080529	2	2	2	60	2L	13709780	13709799	AAATCTTGTGGACTATGCGA		59	13709821	13709840	CTAACTTCAAGTCCTGTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33643	FBgn0053643	FBtr0091620	2	1	1	118	2L	13531339	13531357	AAGGTCGATTAGATGCCTG		59	13531439	13531509	GAAGTTCGCTTTCAGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4988	FBgn0032372	FBtr0080254	3	1	1	98	2L	11695109	11695127	CCTATATGGGTGGTACCCT		59	11695189	11695293	CCTCAACGTTCCTAGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6724	FBgn0032298	FBtr0080191	1	1	1	128	2L	10768574	10768659	GATCCTAGGACAAACCAGG		59	10768464	10768482	GTTCTGGTTGTCATAAGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4537	FBgn0032153	FBtr0113031	1	1	1	63	2L	9890999	9891017	AATCAACGAGAACAAGGCT		59	9891044	9891062	TAAAGCAGTCCCTATGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34398	FBgn0085427	FBtr0112648,FBtr0112649	1	2	2	85	2L	8927410	8927428	CATAGATAGTGCCGACGTC		59	8927477	8927560	TGGTGATTCCACTATCCCT		59	NA	
Drosophila melanogaster	50	CG7219	FBgn0031973	FBtr0079549	1	1	1	97	2L	8005559	8006448	CTCAATCCCGACTACAGAC		59	8005480	8005498	ATATTGTATCGTGCTGTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13983	FBgn0031792	FBtr0079285	1	1	1	125	2L	6264288	6264363	AATGCCTTCTCCAAGATCG		59	6264181	6264199	ATCCGATTCCTGATTCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15425	FBgn0031591	FBtr0077471	2	1	1	70	2L	4258160	4258238	TTTCATAGTGCTTGCAAACG		59	4258271	4258289	TTACTCATGTACGTGGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Got2	FBgn0001125	FBtr0077868	2	1	3	234	2L	1986087	1986797	TATCAACATGGTTCTCCGAG		59	1985810	1985828	TTGTAGAACTCGGGAATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15446	FBgn0031155	FBtr0077261	3	1	1	65	X	20972437	20972457	CCGTTAAGATTAAAGTGGAGG		58	20972392	20972410	TGACCATCGAATCAGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8568	FBgn0030841	FBtr0074436	1	1	1	60	X	17344694	17344714	GCAGAAGAATACAACACTGAC		59	17344654	17344675	TTGATTCTTCTCCATCTCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nipsnap	FBgn0030724	FBtr0074258,FBtr0074257,FBtr0074259	3	3	3	278	X	15965372	15965390	TCTTAGCTTGATGCAGGAG		59	15964886	15965070	TGCAGAGATTTGTAACACC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG12539	FBgn0030586	FBtr0073987	2	1	1	60	X	14738631	14738652	ATTGGTCAATCTCATAGAGCAG		59	14738536	14738557	ATAGTTGGATAGATCTCTGGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11245	FBgn0030388	FBtr0073646	1	1	1	60	X	12338729	12338749	TCACCGTTAATGTAGAGACTG		59	12338770	12338789	GGCAGCTTGAATATCTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4575	FBgn0029920	FBtr0071000	1	1	1	74	X	6844572	6844590	TACGGAAGAATATGGAGGC		58	6844847	6844865	TCGTAGTATGCGGTATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085146,FBtr0085143,FBtr0085139	1	3	12	133	3R	22894894	22894912	TATCGCTGTTCAAAGTCCT		58	22892379	22892854	GTCCGTCCTATTAAAGAGGA		58	NA	
Drosophila melanogaster	50	CG4582	FBgn0039344	FBtr0084896	3	1	1	64	3R	21408426	21408444	CTACTTCCACCTGCATACC		59	21408380	21408399	ATTTCAATGGTCCTGTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nAcRbeta-96A	FBgn0004118	FBtr0084681	1	1	2	116	3R	20335951	20336624	GATTCCGACAATGTGATACC		58	20335353	20335873	CTCCACAATCTCGTTATCCT		58	NA	
Drosophila melanogaster	50	Myo95E	FBgn0039157	FBtr0100517,FBtr0084579,FBtr0084578,FBtr0100518,FBtr0100519,FBtr0100516,FBtr0100520	1	7	7	81	3R	19984736	19984819	TATACGAAGCGATCCTTGG		58	19984673	19984691	TTAGAACCACTGCGATGAC		59	NA	
Drosophila melanogaster	50	CG5315	FBgn0038984	FBtr0084283,FBtr0084284,FBtr0084282	1	3	3	82	3R	18370410	18370491	TAATTCTGATGGGCCTCCT		59	18370346	18370364	AAACTTTCCAGGGAACCAG		59	NA	
Drosophila melanogaster	50	CG7794	FBgn0038565	FBtr0083540	3	1	1	97	3R	13850105	13850189	TATCCTTCGCCTTCAATCTC		59	13850248	13850267	ACAATAAACGATACATCGGC		58	NA	
Drosophila melanogaster	50	CG34280	FBgn0085309	FBtr0112476	3	1	1	62	3R	13229376	13229394	GGCTCTTCTTAATCTAGCG		57	13229332	13229350	TTAATTCCGATTCTCGAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cher	FBgn0014141	FBtr0089473,FBtr0089472,FBtr0089474,FBtr0089471	3	4	4	116	3R	12920031	12920106	AAGGCTGACATCAACTACC		59	12919933	12919951	TCCCTTGATGTGCTTATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12783	FBgn0038448	FBtr0089666	3	1	1	74	3R	12438052	12438070	TTATGTTCGTCCTAGGGCT		59	12437939	12437957	TCATATTGCAACGGTTTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34402	FBgn0085431	FBtr0112655,FBtr0112654	1	2	3	209	3R	8211982	8212000	CTTCACAGTCTCACATTGG		58	8212281	8212299	GAATGGCTGGCATTAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	stck	FBgn0020249	FBtr0081845,FBtr0081846,FBtr0081844	3	3	3	224	3R	4184858	4184932	GCTGCTAACGATATGAACG		58	4185120	4185138	CTGATGATAGTGCGTCTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31550	FBgn0051550	FBtr0078685,FBtr0113409,FBtr0078684	2	3	3	246	3R	1314708	1314728	ACTAAAGGAGGACAACATTGG		59	1314989	1315100	ACGTGGATTGTTCAAAGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13048	FBgn0036593	FBtr0075475	2	1	1	60	3L	16276606	16276625	ACTACAATCACTTCGATCCC		59	16276565	16276583	AAGTGGCTCAGATGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ATPsyn-b	FBgn0019644	FBtr0076406,FBtr0076405	3	2	2	69	3L	9724142	9724161	AAGGAGACTCTCAACAAGTG		59	9724193	9724211	TCGTTTAGGCAGACTTGAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14826	FBgn0035750	FBtr0076833,FBtr0113151	3	2	2	60	3L	7227955	7227974	AAATCTCACGGAATTCATGG		58	7227995	7228015	CCCACTATTCTGGTAGATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr65Av	FBgn0052405	FBtr0077024	2	1	1	74	3L	6132846	6132867	CCATACTAAGATACGACAACGA		59	6132683	6132701	TAACTCCATCACTGGTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ets65A	FBgn0005658	FBtr0077054	1	1	2	97	3L	6096882	6105478	CTCTGCACTGTATTCCTCG		59	6107411	6107429	GATCATGTTTGATGCCCAG		58	NA	
Drosophila melanogaster	50	CG11347	FBgn0035542	FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141	2	6	6	226	3L	4419447	4419465	TATTAGGTCCACCCAGGAG		59	4419654	4419749	TGTTCTTGCTCTTCTGACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10855	FBgn0035461	FBtr0073185	3	1	1	60	3L	3804112	3804132	CAGATGGAGATGAAGCTACAG		59	3804072	3804091	TCTCGAAGTACAATTCGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sty	FBgn0014388	FBtr0073145,FBtr0073146	3	2	2	92	3L	3403030	3403048	ATGGATCATGGATGCAGTG		59	3402956	3402974	TTAGTAGTCGGGACTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7879	FBgn0035235	FBtr0072827,FBtr0072826	1	2	2	204	3L	1564035	1564053	TTCGAAACTTCTTCTCGGG		59	1562881	1562899	CGAGCAGTCTCAATAACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sox14	FBgn0005612	FBtr0072158,FBtr0072157	3	2	2	60	2R	19871578	19871598	ATATTATACTACCCTCAGCCG		58	19871619	19871638	AGAGGTAAGTATTCAGACGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dcp1	FBgn0034921	FBtr0072223	1	1	1	64	2R	19776668	19776686	AACGATAAGGAGTTTGCCA		59	19776622	19776640	AGCAGTAGATTGGAACAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15086	FBgn0034374	FBtr0086649,FBtr0086650,FBtr0086648	2	3	4	60	2R	14569928	14569948	GATGCCGAATATTTCCATTCC		59	14569745	14569765	CAGAGTCTTGTAGATAATGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30492	FBgn0050492	FBtr0088913,FBtr0113382,FBtr0088914,FBtr0088915	3	4	6	90	2R	3538427	3538445	ATGCCATCTGTTAAGGCTC		59	3538499	3538583	CTATTCTAACCTTGGCCCG		59	NA	
Drosophila melanogaster	50	Dpit47	FBgn0033083	FBtr0086146	2	1	1	75	2R	2549313	2549331	AAGAAACGTTACGAGGAGG		59	2549256	2549274	GTTTCATGAAGAACGGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17082	FBgn0039994	FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289	3	6	6	91	2R	644085	644172	TTCTATTGGTCGATCAAAGGAG		59	644224	644242	CATTCTCTGAGGCTGACAG		59	NA	
Drosophila melanogaster	50	Ret	FBgn0011829	FBtr0081496,FBtr0081494,FBtr0081493,FBtr0081492,FBtr0081495	1	5	5	88	2L	21184334	21184355	GAGCCTGTTAATGTTAAGATGG		59	21184212	21184288	CGATGAACCAACTTTAACTCAG		59	NA	
Drosophila melanogaster	50	CG10026	FBgn0032785	FBtr0081237,FBtr0081236,FBtr0081238	1	3	3	86	2L	19457160	19457237	CTACTAGTGACCTCCATGC		58	19457287	19457305	AAATATCTTGAATGCCGCG		58	NA	
Drosophila melanogaster	50	CG10341	FBgn0032701	FBtr0113042	1	1	2	88	2L	18698898	18698917	GAAACAGCTGTTGAATTGGG		59	18698968	18699045	TTCGTAGCTTCTGTTGTCG		59	NA	Nonspecific
Drosophila melanogaster	50	Orc5	FBgn0015271	FBtr0080543	3	1	1	60	2L	13831260	13831280	GCCATTCTAGAGGAGAAAGTC		59	13831302	13831320	CCAAAGTTGAGATCTGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7311	FBgn0028848	FBtr0080530,FBtr0080529	3	2	2	60	2L	13709781	13709799	AATCTTGTGGACTATGCGA		58	13709821	13709841	TCTAACTTCAAGTCCTGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16800	FBgn0032462	FBtr0080417	2	1	1	60	2L	12967436	12967455	ACATCCACAAACTAGACGAG		59	12967478	12967496	TCATTGTGATCCTCATCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4705	FBgn0032339	FBtr0080195,FBtr0080196	2	2	2	93	2L	11092644	11092663	ACCCTATTTGTTCCTTCGTG		59	11092716	11092792	GTGACCAGTTCTATTTCATTGG		59	NA	
Drosophila melanogaster	50	CG6094	FBgn0032261	FBtr0080091	3	1	1	74	2L	10507462	10507480	GACTGGAGATCACCTACAG		58	10507518	10507536	CATCCACCTTGGTATTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9520	FBgn0032078	FBtr0079790,FBtr0079788,FBtr0079789	3	3	3	130	2L	8945117	8945371	CATACTCAATGAAGGTCGCT		59	8945006	8945026	CATCGTATGGCATGAATTCAC		59	NA	
Drosophila melanogaster	50	CG11266	FBgn0031883	FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638	2	7	7	117	2L	7036714	7036822	TTTATCACGTACCACAATGC		58	7036902	7036920	TATTCATGTCCAGTCGCTC		59	NA	
Drosophila melanogaster	50	CG9505	FBgn0031805	FBtr0079253	1	1	1	60	2L	6369132	6369151	GAAGGAACTGTATTCGTCAC		58	6369174	6369192	TCGTAGACGTAGTTCATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS10b	FBgn0031035	FBtr0074732	3	1	2	106	X	19492109	19492199	GACGGGAGTATTACGATACG		59	19492495	19492513	AAGAGGTACTCGTAGATCG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15056	FBgn0030918	FBtr0074560	2	1	1	88	X	18309554	18309645	GAACTTCATCTCGTTCAGC		58	18309697	18309715	AGCTAATGCGAGACTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13005	FBgn0030794	FBtr0074334	1	1	1	60	X	16698013	16698109	TAGTCATCGATCGAAAGCG		59	16698133	16698151	GTTAATTGTTGCGTAGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2574	FBgn0030386	FBtr0073644	3	1	1	97	X	12303387	12303405	ATATACCACTGCAACGTGG		59	12303466	12303553	GAAAGTAGAACCTTGGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2260	FBgn0030000	FBtr0071194	2	1	1	271	X	8013632	8013650	CGTATGAGACTTCGAAGCA		59	8013317	8013398	AATAAACTCCTTTCGCTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14812	FBgn0026090	FBtr0070372	3	1	1	218	X	1752829	1752917	AAAGTCCTAGCGGAAATCG		59	1752418	1752436	GTCCTTCTGGATGACACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41279	FBgn0085595	FBtr0114039	3	1	1	60	U	2221219	2221238	GATTGAAGCGACAATATGCA		58	2219705	2221196	TCTTCTTGGTGTATCGTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1896	FBgn0039870	FBtr0085837	3	1	1	62	3R	27570647	27570728	TTTCTTGAAATTCGCTCCAC		59	27570752	27570771	TATAGAGGAGCCTCTTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12250	FBgn0039345	FBtr0084895	3	1	2	102	3R	21434507	21434594	GTTAAGAAAGAATCTGGTACCG		58	21419449	21419467	TGAAATCGCAATAATGGGC		58	NA	
Drosophila melanogaster	50	CG3987	FBgn0038292	FBtr0083026	2	1	1	106	3R	10965775	10966068	CATTCAATGCTGAAACTGG		57	10966136	10966156	GGAGTATGTACCACTATTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cp16	FBgn0000356	FBtr0076574	2	1	1	131	3L	8725299	8725317	ATTCCCTCAACCGTTATGG		59	8725412	8725564	TCTTGAAGACTGGATCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33228	FBgn0053228	FBtr0072331	1	1	1	124	2R	20556186	20556260	AATACGTGGCTGTCTATGG		59	20556080	20556100	GCCCAGTTTGTACATAATGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14495	FBgn0034293	FBtr0086810	1	1	1	69	2R	13936867	13936885	CTGCGATACATTGGTTGAC		58	13936732	13936834	GTCGAGGTTATGGATTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13282	FBgn0032612	FBtr0080929	2	1	1	111	2L	16832789	16832866	AAATTCCTTTGCTTGCAGTC		59	16832697	16832716	CAGGAGGTAGGATATGTAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31731	FBgn0028539	FBtr0080535,FBtr0110941	1	2	2	84	2L	13785904	13785925	CTCTACAACTATTTGGGTTGTG		58	13785968	13786292	TGTAAGTCTTGGGATCTAGGA		59	NA	
Drosophila melanogaster	50	CG16852	FBgn0028942	FBtr0080507	2	1	1	85	2L	13540993	13541012	TCCCAAAGAGTGAATATGGA		58	13541059	13541139	CACGATTTGATCTTCTTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089429,FBtr0089431,FBtr0089430,FBtr0089436,FBtr0089435,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437,FBtr0089428	3	10	10	116	2L	113362	113446	ATTGTCAAGGACCTAAACCTG		59	113523	113542	TCAGTTGTCAATCTCCAGAG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-3436a	FBgn0086668	FBtr0091752	2	1	1	85	X	6636811	6636829	ATTCTGGACAACTGCTGAC		59	6636744	6636762	CTAGCTCATTGAAAGCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33491	FBgn0053491	FBtr0089603	2	1	1	75	X	20073272	20073290	ATTAAGCAGGAGTTCGAGC		59	20072823	20072841	TGTAGTCACCAGAGGTCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	AnnX	FBgn0000084	FBtr0070025	3	1	1	144	X	20066249	20066349	TGATGGCCATAGTTGAGTG		59	20066123	20066141	TTAATGGTCTCCAGGTCGA		59	NA	Nonspecific
Drosophila melanogaster	50	CG14230	FBgn0031062	FBtr0074787	3	1	1	88	X	19600124	19600142	CAGAAACGATCCTCGTCTC		59	19600254	19600274	TCTTCACTTGGTCATATTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14218	FBgn0031031	FBtr0074770	3	1	1	77	X	19474949	19474967	ATACCTTCTTTAGGTCGCG		59	19474890	19474908	GGGAGTCAACTAAGTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6659	FBgn0030946	FBtr0074613,FBtr0074612	2	2	2	80	X	18550297	18550368	CGCATGTTCATGATCTTCG		59	18550235	18550253	GGTGAAGATGAAGGTGGAG		59	NA	
Drosophila melanogaster	50	CG33639	FBgn0053639	FBtr0091616	1	1	1	60	X	18108515	18108533	CCACCTGGAGCTTTATCTG		59	18108052	18108072	CACTAGTAACATCATTACGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32556	FBgn0052556	FBtr0074477	2	1	2	96	X	17578214	17578232	CGACAAGAGGGTCATATCG		59	17571525	17578155	GTTCACGTAGGTCTGATCTG		59	NA	
Drosophila melanogaster	50	RhoGAPp190	FBgn0026375	FBtr0074483,FBtr0074482,FBtr0074481	3	3	3	81	X	17536385	17536403	CGAGGGCATTTATAGGGTG		59	17536257	17536343	CTCAGTATTGGTATCCTCTTCG		59	NA	
Drosophila melanogaster	50	CG8568	FBgn0030841	FBtr0074436	3	1	1	60	X	17343860	17343879	ATTGATGGCACAAACAATGG		59	17343819	17343838	CTTCTACTGTCTTCTCACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12996	FBgn0030835	FBtr0074419	3	1	1	185	X	17144638	17144656	GATTAGCAGGAACCTGGAC		59	17145113	17145131	GACGTGTTTACTTTGTCGC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	mRpL3	FBgn0030686	FBtr0074090	1	1	1	191	X	15655386	15655404	ATCAATTACTGGGTCTCCG		58	15655679	15655697	CAAAGTTATTGGTGCCCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Grip128	FBgn0026433	FBtr0074075	1	1	2	60	X	15365294	15365421	GGACAGCTTAAGTGACTGG		59	15365252	15365270	GGGCTTCAGAGTAGTTGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14407	FBgn0030584	FBtr0073989	1	1	1	126	X	14732199	14732217	TAGCTGACACTTGAACAGC		59	14732091	14732109	AATCTGGTATCTCGGATGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	rut	FBgn0003301	FBtr0073992	1	1	1	108	X	14689075	14689093	GATGGATGTGCTACAGGAG		59	14688852	14689004	GTAGAGTTCCATGTTGTTGC		59	NA	
Drosophila melanogaster	50	Cpr12A	FBgn0030494	FBtr0073784	2	1	1	60	X	13437939	13437957	AGCTACGAGTATCGATTCG		58	13437979	13437999	CGAAATATCCACGTTCATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33651	FBgn0053651	FBtr0091628	3	1	1	64	X	12785773	12785792	CTACAGACGACCTTAAGGAG		58	12785728	12785746	GAAATGTGGTTTGCTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32647	FBgn0052647	FBtr0073703,FBtr0073702	1	2	2	114	X	12670827	12670915	ACAAACTGTACCAGGAACG		59	12670731	12670749	AGGAATCCCAGCATTATGG		59	NA	
Drosophila melanogaster	50	CkIalpha	FBgn0015024	FBtr0073680,FBtr0073682,FBtr0073681	1	3	3	81	X	12550119	12550138	TGAACTATTGTCGTAGCCTG		59	12550182	12550381	GTTCTGAACAGTATGCGGA		59	NA	
Drosophila melanogaster	50	CG32655	FBgn0052655	FBtr0073633	1	1	1	60	X	12128968	12128989	GGATTCTCAATTTACAGACCAG		58	12128929	12128948	TTTGGAATCATCGGTATCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15734	FBgn0030374	FBtr0110815,FBtr0073636	1	2	2	61	X	11980868	11980886	TTGACTATTATTCGCCCGA		58	11980745	11980763	AATCAATGCATTCTCGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34323	FBgn0085352	FBtr0112525	3	1	1	60	X	11964608	11964626	ACCTGGGTATTGAAGTACG		58	11964647	11964668	CCTGATTAACGTGAATAAGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CkIIbeta	FBgn0000259	FBtr0073562	2	1	6	131	X	11689032	11689147	TTGTTCCAAGGCTATATGGA		58	11694047	11694065	TATTCTCAGGCTCTTCGTC		58	NA	
Drosophila melanogaster	50	bif	FBgn0014133	FBtr0073527,FBtr0073526	2	2	2	140	X	11575138	11575759	GCAATTGCAGATTTCACAG		57	11575863	11575881	AACAACAGAGTGATGACCT		58	NA	
Drosophila melanogaster	50	dsh	FBgn0000499	FBtr0073454,FBtr0073455	2	2	2	60	X	11251512	11251531	AGTATTATTGCCGACATTGC		58	11251554	11251572	CCTCGAGGTTATTCTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15295	FBgn0030220	FBtr0071508	2	1	1	67	X	10511011	10511029	TACATAGGCACCAAGAACG		59	10510962	10510980	ACATCGTTCTTGAACTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34319	FBgn0085348	FBtr0112521	1	1	1	60	X	10149201	10149539	CTATCAACTACAAGCGCGA		59	10149159	10149177	CGTATCTCAAAGTCCAGCA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15312	FBgn0030174	FBtr0071421,FBtr0071423,FBtr0071422	1	3	3	70	X	9955170	9955253	ATAGTTCAGACTGGTCGTG		58	9955118	9955136	AAGCATACGTAGATTCCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15252	FBgn0030167	FBtr0071426,FBtr0112970	3	2	2	142	X	9873643	9873809	ACTTTCTGAGGCTCATGAC		59	9873402	9873538	TAACATTTGGCGACTTTACG		58	NA	
Drosophila melanogaster	50	l(1)G0232	FBgn0028341	FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407	1	6	6	83	X	9524045	9524065	CCGTCGGATTATATTAATGCG		59	9523917	9524001	CTTTGGTAATGGACCTTGAG		58	NA	
Drosophila melanogaster	50	CG34026	FBgn0054026	FBtr0100081	2	1	1	62	X	9428182	9428200	CAACTGCTGTATTGGTCAG		58	9428223	9428244	CGGAAGTGAACTTAATAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	c11.1	FBgn0040236	FBtr0071326	3	1	1	108	X	9172925	9173001	TTCATACGCATAGGTGGAC		59	9172835	9172853	ACTTCATCTTGAGCTGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7766	FBgn0030087	FBtr0114595,FBtr0071351,FBtr0114594	1	3	5	110	X	8994627	8994645	ATGATCGACATCCTCAAGG		58	8992436	8994554	CTTGTCCTGATCTAGATGGA		57	NA	
Drosophila melanogaster	50	CG10970	FBgn0030078	FBtr0071356	3	1	1	60	X	8963897	8963915	GCCTTTAAGAAGCTCATCC		58	8963855	8963874	TAATGAACTCCTTGATGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15364	FBgn0030075	FBtr0071261	2	1	1	60	X	8934289	8934307	ACCGATCCATTTAGAACCG		59	8934330	8934349	CTGTGCATTACCCATTAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hexo2	FBgn0041629	FBtr0071249	3	1	1	285	X	8605871	8605889	GTACATCGAGACCTACCTG		58	8606138	8606226	GATTCGGGATTCCAGTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12065	FBgn0030052	FBtr0071215,FBtr0071214	3	2	4	95	X	8480265	8480589	ATACACCACAGTCGATTCC		59	8481296	8481315	CCCAGAGTATACACATTCGA		58	NA	
Drosophila melanogaster	50	spirit	FBgn0030051	FBtr0071231,FBtr0071230	2	2	2	86	X	8466541	8466559	GAGGTTCGACCACTATGTG		59	8466322	8466340	TTGTTCAGTTCATTGCAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	l(1)G0193	FBgn0027280	FBtr0071129	3	1	2	83	X	7839977	7839995	CAACGAGGATCGATCTTCC		59	7837244	7839931	ATTTGATCGGTAGACACCTC		59	NA	
Drosophila melanogaster	50	hdm	FBgn0029977	FBtr0071133	2	1	1	107	X	7813103	7813124	CATACATCAGTTTACTGCAGTG		59	7812914	7812933	GGTATATGTTGTTGACAGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	dec-1	FBgn0000427	FBtr0071146,FBtr0071145	3	2	3	166	X	7764353	7764371	AGTTACGGAACAAGCTACG		59	7764007	7764223	TTCGGGTTTATTGTCCTGG		59	NA	
Drosophila melanogaster	50	CG3168	FBgn0029896	FBtr0070986,FBtr0070985,FBtr0070984	3	3	3	90	X	6617448	6617466	CTTCTCGCAGACATACTCG		59	6616689	6616708	GAAGTACGACCAGATCACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5928	FBgn0029836	FBtr0100295,FBtr0070871	1	2	2	80	X	5962705	5963096	ACCTTTATTCAGAAGCCCA		58	5963139	5963158	TTTGCCTCCTATGATATCCA		57	NA	
Drosophila melanogaster	50	mof	FBgn0014340	FBtr0070829	1	1	1	60	X	5768537	5768555	AGCAGATCACAATCAAGGA		58	5768495	5768513	TAGATAATGTCGTCGTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070769,FBtr0070766	2	5	7	95	X	5292153	5292440	ACTGACATGGCTAAGACAC		59	5292498	5292517	CTCTAGGTTGGTTAAACGCT		59	NA	
Drosophila melanogaster	50	dhd	FBgn0011761	FBtr0070749	3	1	1	274	X	5206671	5206689	ACAAATTCGAGGAGCTGAC		59	5206924	5206945	CATGAGCATACACATAACATCG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Cdk7	FBgn0015617	FBtr0070756	1	1	1	60	X	5202472	5202490	AAGGGTCTGGAGTATTTGC		59	5202430	5202449	AATTGTTGGGCTTCAAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2982	FBgn0029704	FBtr0070649,FBtr0070648	2	2	2	60	X	4215547	4215565	TTCAGCTCGCAAGATAGAG		59	4215589	4215607	CTCGGTCATAAGAAGACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6414	FBgn0029690	FBtr0070624	2	1	1	70	X	3863403	3863422	ATTAATGCTCCATCTGTGGG		59	3863291	3863311	GATGAAAGCTAACATTCGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	fd3F	FBgn0061173	FBtr0070602	1	1	1	91	X	3704128	3704146	GGTCAACTCTATCATCAGC		57	3704282	3704300	CACTTTCCGTAACAACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514	1	9	14	83	X	3215176	3215194	TCTATATCGCTCCGATTCG		58	3215240	3219968	TCTTTAAACCTTTCGCTAGC		58	NA	
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070511,FBtr0070514	2	13	14	81	X	3228354	3228595	CGTCGCTTAAGTTCAAACG		59	3228640	3228658	TCGGAAATCTGATTTCCCG		59	NA	
Drosophila melanogaster	50	CG18508	FBgn0028746	FBtr0070543	2	1	1	98	X	3066979	3066999	CCTGTATTATCATTCCACTGC		58	3066901	3066919	CATCGTCGTCCTTCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3740	FBgn0023530	FBtr0070283	2	1	1	165	X	1562735	1562753	TCATCCTAAACGACCTGAC		58	1562588	1562606	GTCACGAATGACATGACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11398	FBgn0040366	FBtr0070250	2	1	1	60	X	1109045	1109066	CCACATACATATGAGGATGAGG		59	1109006	1109024	GTTCCTCGAACTGTAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cin	FBgn0000316	FBtr0070064,FBtr0070065	3	2	2	82	X	150606	150624	TATGCCATGAAGTCCACTG		59	150667	150808	GGCAAAGAATTAGGTGAATCTC		59	NA	
Drosophila melanogaster	50	CR42206	FBgn0085833	FBtr0114291	2	1	1	287	U	4660492	4660510	TCATACTGGCGTTTCTCAC		59	4660813	4660833	GGGTACATTTGGCTTAAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CR40728	FBgn0085769	FBtr0114219	2	1	1	67	U	9902173	9902192	ATGATTCACAGAAGTCGACC		59	9902125	9902143	CTACGGAAACCCTGTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40972	FBgn0085548	FBtr0113961	1	1	1	60	U	9895859	9895877	TACGATTTCAGCTGTTGGA		58	9895690	9895710	CTTTCGCGAATGAAGATACTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41279	FBgn0085595	FBtr0114039	1	1	1	82	U	2221186	2221204	GAAACGAACCACGATACAC		58	2219649	2219667	GCCAGGTACCATAAATGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG18160	FBgn0039980	FBtr0113765	1	1	1	106	U	376473	376491	ATGAATATAAAGCCCGGCA		59	376561	376579	CAATCGTGGATATGGAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dyrk3	FBgn0027101	FBtr0100402,FBtr0100404,FBtr0100406,FBtr0100403,FBtr0100405	3	5	5	141	4	1230562	1230633	CAGTTACAGGGCAGAATAGG		59	1230440	1230458	AAGTCCGTTTCTGGAACAG		59	NA	
Drosophila melanogaster	50	ATPsyn-beta	FBgn0010217	FBtr0089187,FBtr0089186	1	2	2	60	4	1053778	1053798	GATACTGGGTATCCTATCCGA		59	1053818	1053838	CATTAATGATGCGTCCTAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED26	FBgn0039923	FBtr0089253,FBtr0089254	3	2	2	94	4	802283	803807	AATAGACGATCTGGGAAACAC		59	802209	802230	ACGAGGTACATTCCTTTATCTC		59	NA	
Drosophila melanogaster	50	CG11260	FBgn0039912	FBtr0089081	3	1	1	65	4	611661	611679	ATCCCTACAGGTGTACCTC		59	611708	611726	ATCGTTGACCATGAATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0089130,FBtr0089131	2	2	5	113	4	363634	363652	GGTATGAATCTGGGTGAGG		59	350957	363558	GCCTATTACTTGTGTTTGCA		58	NA	
Drosophila melanogaster	50	CG32006	FBgn0052006	FBtr0089170	2	1	1	139	4	173533	173613	GATACTACCAACACTCCCA		57	173716	173734	CTAGGCCAGGATACATCAG		58	NA	
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450	1	8	8	166	4	157780	157853	TCGAGCAACCTTAAGACAC		59	158041	158059	TAAACCAATTGCTTGCAGC		59	NA	
Drosophila melanogaster	50	CR33294	FBgn0053294	FBtr0113460	3	1	1	97	3R	21527	21602	AACAGTAATCAAACAGCTGG		58	21661	21680	GATATCTGACAGTAATGCGC		58	NA	
Drosophila melanogaster	50	tre-3	FBgn0084245	FBtr0113490	3	1	1	98	3R	12589329	12589347	GAACTTCCACTCAAAGGGA		59	12589249	12589270	AGGTGATTCCTCATTGATATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sip3	FBgn0039875	FBtr0085842	2	1	1	96	3R	27598371	27598390	CTACATCACCAAATCGAACG		59	27598510	27598584	CAGGAAGATCTTGCTTAGCA		59	NA	
Drosophila melanogaster	50	pasha	FBgn0039861	FBtr0085820	2	1	1	116	3R	27446120	27446138	TAACGGGCAACAATAAGGA		58	27446274	27446292	TCTTGTTGCAGAATTCGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15561	FBgn0039829	FBtr0085776	2	1	1	68	3R	27040838	27040856	AAAGACAAGGCTGAGAAGG		59	27040788	27040807	GATCTTGACGGGATCTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15556	FBgn0039821	FBtr0085737	2	1	1	60	3R	26955068	26955086	CCAACTGAAGAGAAAGGGA		58	26955026	26955047	GAGTGAATCTCGAGTATAGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15535	FBgn0039764	FBtr0085629	1	1	1	118	3R	26249271	26249289	GAGAAAGTTAGAGCGGACC		59	26249171	26249189	ATGCGATCCTTCATCAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085631,FBtr0085634	2	4	5	241	3R	26212044	26212062	CAGCGATCTGATCAATGTG		58	26211759	26211777	TCTTCTTGAGAGTGGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9743	FBgn0039756	FBtr0085571	1	1	1	84	3R	26022752	26022826	TACGACAAGAACCTCATGTC		59	26022687	26022705	AAACGTGGTGGTAATTGTG		58	NA	
Drosophila melanogaster	50	CG18682	FBgn0040625	FBtr0085588	3	1	1	80	3R	25948595	25948613	TGGGTCTGGATTATCTGGT		59	25948474	25948552	CTACAACTAATGGCTTCGGT		59	NA	
Drosophila melanogaster	50	Ice	FBgn0019972	FBtr0085482	1	1	1	60	3R	25626088	25626106	AGCGATAGTGATTGCATCC		59	25626130	25626148	CGTAGATGTAGCCCATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11880	FBgn0039637	FBtr0085373,FBtr0085372,FBtr0085371	3	3	3	75	3R	24951436	24951454	ATCACTGGATGTGACACTC		58	24951562	24951580	CCTTCATAGTGTCCCAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	3	7	8	82	3R	24639656	24639675	TTACTGCTACGGATATTGGC		59	24639719	24640879	GCTCAAACACCTTATAGCAG		58	NA	
Drosophila melanogaster	50	CG9990	FBgn0039594	FBtr0085309,FBtr0085308	2	2	2	101	3R	24518601	24518620	TCCATCTACAAGTGCATCAG		59	24518681	24518867	GATGTTGTTACTGAAGTTCACG		59	NA	
Drosophila melanogaster	50	Noa36	FBgn0026400	FBtr0085320	3	1	1	87	3R	24424304	24424322	ACAAGCTGGGTCAATACTC		59	24424235	24424253	TTCTTGTCGTACTTGAAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34436	FBgn0085465	FBtr0112737	1	1	1	108	3R	24108560	24108578	ATAACATCAGCAAGCTGTG		58	24108706	24108724	CATGGTAATCATCACTGCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5514	FBgn0039560	FBtr0085252,FBtr0085253	1	2	2	109	3R	23765359	23765436	TACCTTCGAAGGTACTGAG		57	23765509	23765527	CTATGTTTGCCTTCACCTC		58	NA	
Drosophila melanogaster	50	CG12259	FBgn0039557	FBtr0085270	2	1	1	60	3R	23745997	23746016	ACTCCATCTACCAGTTTCTG		58	23745956	23745974	AGTTCGATGAACTCCTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5639	FBgn0039527	FBtr0085202	1	1	1	97	3R	23416040	23416058	TGATTAGCAGGTCGTATGC		59	23415898	23415982	GTTGTGGTCATTCTTAAATCCG		59	NA	
Drosophila melanogaster	50	BM-40-SPARC	FBgn0026562	FBtr0085094	3	1	1	189	3R	22696077	22697648	ATTGAGATCGCCATTCGAG		59	22695844	22695927	ATCCTTGATCTTGTTCTTCTCC		59	NA	InUTR
Drosophila melanogaster	50	CG14240	FBgn0039435	FBtr0085058	3	1	1	60	3R	22446824	22446842	GACTTCGAGGATAAGGCTG		59	22446782	22446800	CGCGAATGTTCTTCTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdf	FBgn0023178	FBtr0085024	2	1	1	157	3R	22281657	22281675	GTACAATCGGGATCTCCTC		58	22281518	22281536	AGGAGTTGATTAGCTCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dys	FBgn0039411	FBtr0113293,FBtr0113294	1	2	3	81	3R	21914065	21921925	CGGCATGTTTACAAGATTCG		59	21914003	21914024	TATCTCCGCATTTATGAGATCG		59	NA	
Drosophila melanogaster	50	gro	FBgn0001139	FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963	3	5	5	104	3R	21870081	21870172	CGCCATTATGTTATGTACTACG		59	21870236	21870255	AAGTAGCTGGTTGATCAGTG		59	NA	
Drosophila melanogaster	50	Nf1	FBgn0015269	FBtr0084952	1	1	3	129	3R	21819199	21819399	GGATAAAGCATTCTCATCGGA		59	21819490	21819508	TCAATGTGATGGACTGTCG		59	NA	
Drosophila melanogaster	50	CG4730	FBgn0039355	FBtr0084934	3	1	1	110	3R	21503178	21503257	CGTAACAAACTACGCATGC		59	21503086	21503104	TGCCATTACCAACTTGGAG		59	NA	
Drosophila melanogaster	50	Fur1	FBgn0004509	FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986	2	5	6	196	3R	21182169	21182187	GAGACGAGGAGACATTCAG		59	21180029	21181956	TGATTTGTGCCATATAGCGA		59	NA	
Drosophila melanogaster	50	CG31099	FBgn0051099	FBtr0084856	1	1	1	120	3R	21135535	21135553	CTTAATTTCGGAGGCAGTC		58	21135380	21135398	CGAACTGATTCATCATCGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	tok	FBgn0004885	FBtr0084689,FBtr0084690	3	2	2	90	3R	20568665	20568888	CAGTCACAGAGTCAGAGTG		59	20568942	20568960	CCTCATTCTTGTAGCTGGA		58	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100638,FBtr0100637	2	3	17	117	3R	20508113	20512918	AGGGCGAAGACATATTGTG		59	20512999	20513017	ATGGAGAAAGACCACTTCG		59	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100632,FBtr0100636,FBtr0100637	3	3	17	93	3R	20521092	20521110	AGGACATTAAGGACGAGAC		58	20521838	20528849	CGATTGAGTACTAAGTCATCG		58	NA	
Drosophila melanogaster	50	CG13624	FBgn0039209	FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795	3	6	6	127	3R	20386540	20386625	TTAAGGTGTACAAGCACAG		57	20386431	20386449	AGTCATGTCATTGATGGTG		57	NA	
Drosophila melanogaster	50	Spase22-23	FBgn0039172	FBtr0084564	1	1	1	60	3R	20055569	20055588	TCTTTCTTGACTACCGTACC		58	20055528	20055546	ACATTCTTCACCAGCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6204	FBgn0039165	FBtr0084555	3	1	1	81	3R	20020755	20020834	AAAGGAGGATTGCCTAAGTG		59	20020878	20020896	CTGGAACATGATCAGTGGT		59	NA	
Drosophila melanogaster	50	CG6129	FBgn0039152	FBtr0084544	3	1	2	99	3R	19948739	19948815	GTTGAATTTGAGGTCTGAGGA		59	19948876	19948894	AAGATCACGATTCAGGCTC		59	NA	
Drosophila melanogaster	50	Rab7	FBgn0015795	FBtr0084503	1	1	1	106	3R	19820233	19820251	TACCCTACTACGAAACGTC		58	19820321	19820400	GTTGATAACTTCAGCCTCC		57	NA	
Drosophila melanogaster	50	Pli	FBgn0025574	FBtr0112908,FBtr0084527,FBtr0112907	2	3	3	94	3R	19691347	19691365	TGAATCTCCCATACTGGCT		59	19688923	19691289	AGTAACCATTGTAGCCGAG		59	NA	
Drosophila melanogaster	50	Tbp-1	FBgn0028684	FBtr0084452	2	1	1	203	3R	19579306	19579324	ACCTACAGAGCAGTACTCC		59	19579548	19579566	AAGGTGGACTTTGTCTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13822	FBgn0039098	FBtr0084434	3	1	1	174	3R	19503722	19503740	TCCTATTCGAATGAGCTGG		58	19503875	19503969	GATCAAAGTCATTCTCGAACAC		59	NA	
Drosophila melanogaster	50	CG34111	FBgn0083947	FBtr0110800	3	1	1	105	3R	19067708	19068052	CGTTCATCTAGTCTCTGGC		59	19067621	19067639	TGATCCCATTGAGCATCTG		59	NA	
Drosophila melanogaster	50	CG4467	FBgn0039064	FBtr0084390,FBtr0110801	2	2	2	89	3R	19057621	19057639	GAAGTGGATCTTTCCAGTC		57	19057481	19057569	ACATTGAAGGTTACATCCAC		57	NA	
Drosophila melanogaster	50	CG4467	FBgn0039064	FBtr0084390,FBtr0110801	3	2	2	90	3R	19057621	19057639	GAAGTGGATCTTTCCAGTC		57	19057480	19057568	CACATTGAAGGTTACATCCA		57	NA	
Drosophila melanogaster	50	Or94a	FBgn0039033	FBtr0084341	1	1	1	60	3R	18813338	18813356	CTACCAACTCCACAACCAG		59	18813380	18813398	CTTGAAGAATCGTTGCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6954	FBgn0039000	FBtr0084300	3	1	1	80	3R	18503492	18503511	GCGGTGTTAAGCAATAATCG		59	18503554	18503632	GTCCACAGAGAACTGAGAG		59	NA	
Drosophila melanogaster	50	loco	FBgn0020278	FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273	1	4	4	85	3R	18446567	18446653	AGCACCAAGATGAACTACTC		59	18446501	18446519	GTCGAAGTTGATTTCGGTG		59	NA	
Drosophila melanogaster	50	CG31161	FBgn0051161	FBtr0084271	1	1	1	93	3R	18443667	18443685	AATGGAGATCGATGTGCTG		59	18443741	18443814	GGCCTTCATCATAATCTGCT		59	NA	
Drosophila melanogaster	50	CG6678	FBgn0038917	FBtr0084148	2	1	1	175	3R	17714978	17731656	CTCCATTTGAAGTGTACGG		58	17731795	17731813	AAGATACGGCTAAAGAGCC		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG33092	FBgn0053092	FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144	1	7	7	268	3R	17705102	17705177	AGGACTTTCGGGATTTGTG		59	17705407	17705427	AGGTACCAGTGAAGTTAATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34034	FBgn0054034	FBtr0100089	1	1	1	108	3R	17564423	17564441	AAATGCCACAATGTTGGTG		59	17563344	17563362	TGGTGAACATGGTAACCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3353	FBgn0038869	FBtr0084108	1	1	1	125	3R	17043428	17043505	AAAGTCGGAGAATTTGCTG		58	17043321	17043339	AATGTCGTTGGAATAGGGA		58	NA	
Drosophila melanogaster	50	lrrk	FBgn0038816	FBtr0112788	1	1	1	80	3R	16465955	16465974	TGATGAAGCTGGATGATCTC		59	16466016	16466104	GACTGACAATGTAGCTTCTG		58	NA	
Drosophila melanogaster	50	CG17199	FBgn0038775	FBtr0083874	2	1	1	60	3R	16035348	16035366	TAATCAAACGCCAAACAGC		59	16035306	16035324	ACTGGACTCTTTGACTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hs6st	FBgn0038755	FBtr0083846	2	1	1	80	3R	15763020	15763040	ATCGAGAAGCTAAACAGTCTG		59	15756239	15762978	CTTCAGATGTTCGAAACGC		59	NA	
Drosophila melanogaster	50	Arc42	FBgn0038742	FBtr0083817	3	1	1	173	3R	15703861	15703880	TATCCAGAGAAACAGATCCG		58	15704084	15704102	ATACAGGGAGTTGTTCACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31459	FBgn0051459	FBtr0083812	2	1	1	162	3R	15667142	15667160	GTTCTTCAAGTTCAGTGGG		58	15667350	15667368	AGTAACACATGAGCACCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	repo	FBgn0011701	FBtr0083564	2	1	1	68	3R	14062805	14062823	TGGACCATTTGGATCATGG		59	14062855	14062873	ATCCTCCGTTGATCATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14323	FBgn0038529	FBtr0083498	1	1	1	61	3R	13447715	13447733	TCATACAGGACCAGAACCA		59	13447672	13447690	GACGAAACAAAGTACCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	decay	FBgn0028381	FBtr0083304	1	1	1	181	3R	12325170	12325496	CCACATTCGACAAATTCTTCTC		59	12325010	12325028	CGTATTCGACTGGTACTCG		59	NA	
Drosophila melanogaster	50	rec	FBgn0003227	FBtr0083193	3	1	1	60	3R	11650363	11650382	TTTGGAGCTTACGAAGAGAC		59	11650322	11650341	CTCATCGAATTCGAAGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34274	FBgn0085303	FBtr0112469	1	1	1	83	3R	11558093	11558163	GCTTTATCAAGTTACGCGA		58	11558210	11558228	CACGCAGATAATGTTCGTC		58	NA	
Drosophila melanogaster	50	Tm2	FBgn0004117	FBtr0083080	1	1	3	102	3R	11138921	11138939	TCCATCAAGTTGAAGGAGG		58	11139005	11139327	CATTGAAGAGACGGTCCTC		59	NA	
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	3	7	12	160	3R	11122417	11125003	AGAAATACGATGAGGTTGC		57	11126526	11126544	CTTCTCCTCAGAGACTTCC		58	NA	
Drosophila melanogaster	50	CG17304	FBgn0038267	FBtr0083012	3	1	1	64	3R	10685075	10685093	AATGATCATCGAGGTGCTC		59	10685029	10685049	ACATCATTCTAGTGGCATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	btsz	FBgn0053555	FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530	2	5	5	100	3R	10634158	10634176	ATAAGCTGAGTGCTTTGGA		58	10634011	10634096	TAGATACACCTTAACGTAGGG		58	NA	
Drosophila melanogaster	50	CG14852	FBgn0038242	FBtr0082957	3	1	1	176	3R	10391988	10392006	TAGTCCTTCAACAGGATCG		58	10392145	10392164	TTATTCCTGTTATTGCGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14356	FBgn0038207	FBtr0082908	2	1	1	89	3R	9956745	9956763	GTGAGAATCTCTACCAGGC		59	9956674	9956692	CATGGGACTTATCCTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34383	FBgn0085412	FBtr0112622,FBtr0112621,FBtr0112624,FBtr0112623	1	4	4	132	3R	9583498	9584191	ACTCTAAGAAACTGGAGCAG		59	9584286	9584304	TTGATGTGAGAGCCATCAC		59	NA	
Drosophila melanogaster	50	ry	FBgn0003308	FBtr0082704	2	1	1	136	3R	8863408	8863426	TCTTTGCCATTAAGGAGGC		59	8863526	8863609	TATTTCAAGCAGTTCCGTG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG7242	FBgn0040494	FBtr0082690	2	1	1	88	3R	8787956	8788448	CATGGAAAGCATTCACACG		59	8788500	8788518	GTACAGTGACACCCTTCAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG5167	FBgn0038038	FBtr0082583	1	1	1	60	3R	8233214	8233232	CGTTTCCTTTACGAACTGG		58	8233256	8233274	GATACGTCATGTAGGCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34402	FBgn0085431	FBtr0112656,FBtr0112654	1	2	3	81	3R	8228195	8228269	CATTGGAAGTTGTGACCAC		58	8228314	8228332	TCTGCTGAACTTTCGATCC		59	NA	
Drosophila melanogaster	50	GstD1	FBgn0001149	FBtr0100410,FBtr0082607	3	2	2	87	3R	8193741	8193759	AATGTGAACAGGTGGTACG		59	8193672	8193691	AGTACTTCTTGAACTCCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	3	15	15	123	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811939	7812029	GGTTCTTCAGGATGTTGGA		59	NA	
Drosophila melanogaster	50	Taf12	FBgn0011290	FBtr0082442,FBtr0082440,FBtr0082441	1	3	3	68	3R	7504487	7504505	GATCATCGACGACTTTGTC		58	7504437	7504455	TTAGACTTTCGGTGCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS25	FBgn0086472	FBtr0082369,FBtr0082370	1	2	2	127	3R	7041512	7041531	AGAAGCTGTACAAGGAAGTG		59	7041336	7041422	CTTGATCAGACCCTTCTCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG17100	FBgn0037813	FBtr0082246	1	1	1	60	3R	6222516	6222535	ACCGGAAGACGTAATAAGAC		59	6223098	6223118	GTTTCTCAATGATTCGATGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	MED6	FBgn0024330	FBtr0082162,FBtr0082161	3	2	2	99	3R	5592834	5592906	CATCTGCACAACATGATCG		59	5592753	5592771	CTTCCGAGGGATTATGACG		59	NA	
Drosophila melanogaster	50	CG12948	FBgn0037739	FBtr0082167	3	1	1	62	3R	5572938	5572956	CCGCTACATAATTCAGTGG		57	5572894	5572912	ACGTAGACAAAGTCATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8176	FBgn0037702	FBtr0082064,FBtr0082065	1	2	4	104	3R	5348603	5349931	TAGCAATCAAGTCTCTGGC		59	5349999	5350017	TCTTCCTGTATGTTCTCGG		58	NA	
Drosophila melanogaster	50	CG11980	FBgn0037652	FBtr0081962,FBtr0081963	3	2	3	102	3R	4830104	4830123	ACCAAATAACCTTCAAGGAG		57	4830245	4830263	TAGTGACAGTAGACCAGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8116	FBgn0037614	FBtr0081905	2	1	1	148	3R	4542947	4542966	TTAATCTAAACTACGGCGAG		57	4543583	4543602	TGTTAATATTACGGATGCGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8036	FBgn0037607	FBtr0081882,FBtr0081881,FBtr0081883	2	3	3	181	3R	4499021	4499107	GATCACTACCAGCAAGGAG		59	4499252	4499270	TTGAGGATCTCGTTAACGG		59	NA	
Drosophila melanogaster	50	CG9626	FBgn0037565	FBtr0081864	1	1	1	81	3R	4123029	4123108	CACGAGAAAGAGAAATTGTCC		59	4122968	4122986	CATCCGAAGTCTTGACCTC		59	NA	
Drosophila melanogaster	50	Sp7	FBgn0037515	FBtr0081740,FBtr0081742,FBtr0081743	3	3	4	93	3R	3586989	3587741	ACAAGGAAGTTGTAGGAATCC		59	3587795	3587814	ATAAGACTGCTGAATCACGG		59	NA	
Drosophila melanogaster	50	dj	FBgn0019828	FBtr0089742,FBtr0089741	3	2	2	66	3R	2885369	2885387	AAAGTTCTTGCAAGACCTG		58	2885416	2885435	CTGATTCCCTTCCTTAAACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pak	FBgn0014001	FBtr0081714,FBtr0114607,FBtr0081715,FBtr0081716	3	4	4	85	3R	2184959	2184977	CATTTCAGGACTTCCTCGA		58	2185026	2185115	TAGGAAGGGATGCTTTAGC		58	NA	
Drosophila melanogaster	50	Obp83ef	FBgn0046876	FBtr0078618	3	1	1	61	3R	1935561	1935579	CTCGTGGATGTACCATGAG		59	1935518	1935536	CCTCCACTAGCTTATTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PEK	FBgn0037327	FBtr0078770	2	1	1	96	3R	1286480	1286583	CGATACTTCCATTCCTGGAC		59	1286403	1286421	TCTGGATAGAGGTGGACAG		59	NA	
Drosophila melanogaster	50	7B2	FBgn0041707	FBtr0078789,FBtr0100112	2	2	2	70	3R	1203302	1203320	CAGGATAGTGCTGATGTGG		59	1203354	1203372	ATCTGCATGATGTACTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	uta	FBgn0037302	FBtr0078826	1	1	2	60	3R	1062627	1062645	GGAGGGTCTTAGTCAAGGA		59	1062585	1062603	TGAAACTGACTTTGCTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2022	FBgn0037292	FBtr0078845	3	1	1	85	3R	812592	813976	GGAGGTGAACGATAAATTCCT		59	812527	812545	GAACAAAGGCGAAGTTCAC		59	NA	
Drosophila melanogaster	50	CG1074	FBgn0037250	FBtr0078925	1	1	1	81	3R	261159	261238	CATAATAACAGATCCTCCCTATGG		59	261278	261296	TCTAGTGTTGGCCTTTACG		59	NA	
Drosophila melanogaster	50	CG1092	FBgn0037228	FBtr0111222,FBtr0078978	2	2	2	60	3R	93615	93634	CAGTTCGTTAATGTTCTGGA		57	93654	93675	GGAAGCTCTTTAAGTAGATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14641	FBgn0037220	FBtr0078985	1	1	1	60	3R	56886	56905	TTGCCATCAAATCTAGTTCC		57	56845	56863	CTGCATAAGTAGGCTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snmRNA:641	FBgn0065088	FBtr0091663	3	1	1	64	3L	17661784	17661802	AATATAGAATCGGCCGACG		59	17661738	17661756	TAATTGGGTGTCCAATTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ten-m	FBgn0004449	FBtr0078509,FBtr0112842	2	2	2	140	3L	22294408	22295905	TTTAACGAAAGTCGATCAGC		58	22294287	22294305	CATTAGGTCGAACCATCCA		59	NA	
Drosophila melanogaster	50	CG7158	FBgn0037116	FBtr0078462	3	1	1	68	3L	21669551	21669570	TGAACTGGTACTAAATCGGC		59	21669439	21669457	TTGTGATCTACCACTTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Aef1	FBgn0005694	FBtr0078349,FBtr0078350,FBtr0078348	1	3	3	116	3L	21429089	21429107	ACCATGTGAAGATCCACAC		59	21429250	21429268	AGACTTTGTCCATGACGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34000	FBgn0054000	FBtr0100055	2	1	1	90	3L	20980777	20980795	CAATTCCCATTCGCTATCG		58	20978090	20978108	CATAAACGCTTGCAAATCG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG13251	FBgn0037014	FBtr0078243	3	1	1	87	3L	20631424	20631442	TATACACCATCAAGGGACG		58	20631492	20631752	ATATAGCAGTATCCATCGGC		58	NA	
Drosophila melanogaster	50	eRF1	FBgn0036974	FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177	2	6	6	81	3L	20344340	20344433	AATTTCTCAGGATACTGGCA		58	20344477	20344495	GAGAGTCTCTACAGAGCCA		59	NA	
Drosophila melanogaster	50	CG7668	FBgn0036929	FBtr0074904,FBtr0074905	1	2	2	89	3L	19997456	19997528	ATGAACTGTAACTTGAACGG		58	19997580	19997598	ACCAACATTCCAATTACCC		57	NA	Nonspecific
Drosophila melanogaster	50	Paps	FBgn0020389	FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885	3	6	6	94	3L	19853426	19853508	CTAGACAGCATGGAGATCC		58	19853566	19853584	AACTCATCCTTCCTCTTGG		58	NA	
Drosophila melanogaster	50	Kap-alpha1	FBgn0024889	FBtr0074881	1	1	1	96	3L	19802100	19802186	CTGCTATTACATCCTCAGCA		59	19802245	19802263	CCAATATCACCTGGGTCTG		59	NA	
Drosophila melanogaster	50	ash1	FBgn0005386	FBtr0074970	1	1	1	167	3L	19584792	19584810	GAATTAGACGTAGGAGCCG		59	19584573	19584664	CTTAAGCATCTGTTTATTGGGC		59	NA	
Drosophila melanogaster	50	CG18811	FBgn0042134	FBtr0075098	2	1	1	175	3L	18664680	18664698	CAAATACGATGCTGTCCTG		58	18664468	18664486	GCACGTTCTGAATGATCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5506	FBgn0036766	FBtr0075157	1	1	1	60	3L	17877256	17877275	ACGTTATTCCCTATAATGCC		57	17877215	17877233	ACATAGGTGGTAAATCCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nrt	FBgn0004108	FBtr0075323,FBtr0075322	2	2	2	217	3L	16767347	16767365	AGGACGAACAGAAATCTCG		59	16767609	16767627	TATCATGTTAGCGATTGGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Lasp	FBgn0063485	FBtr0075350,FBtr0100145	2	2	2	65	3L	16674042	16674350	CAAATTTACACAGGTGGCC		59	16673995	16674014	GATATGTGCTTCGTGTTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Mipp1	FBgn0026061	FBtr0075398,FBtr0075399	3	2	2	148	3L	16558057	16558148	TGACACTTACTACCAGTTCC		58	16557928	16557946	AATAGTCATAGGGACGCAG		58	NA	
Drosophila melanogaster	50	Eig71Eh	FBgn0014848	FBtr0075583	2	1	1	60	3L	15652348	15652370	GGATGTAGAAACAGAGTTAGAGG		59	15652310	15652329	GAAGTTCGCAAAGATTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7739	FBgn0036509	FBtr0075596	1	1	1	60	3L	15554264	15554283	TCGTCTTTATCATCCTTGTG		57	15554223	15554241	AAGCGTTCCTGTTTATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tom	FBgn0026320	FBtr0075620	3	1	1	105	3L	14962523	14962542	CACAATGTCGTTCATCACAC		59	14962610	14962628	GACCAGTTTCCTCAGACTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100044,FBtr0100043	2	2	6	100	3L	14219494	14223284	CAATGAGCAACTGGAACTG		59	14223348	14223366	CTGCATATTCGGTCTTGGT		59	NA	
Drosophila melanogaster	50	CG10738	FBgn0036368	FBtr0075805	3	1	2	133	3L	13458085	13458162	TCATCGCTATCACAGTGAC		59	13458259	13458277	CAATACTTTGGCAGGACAG		58	NA	
Drosophila melanogaster	50	CG11251	FBgn0036346	FBtr0075891	1	1	1	60	3L	13082218	13082236	GGATACTTTCCTCCCACTG		59	13082176	13082194	GTTTAAGTCTGGCACATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or69a	FBgn0041622	FBtr0075901,FBtr0075902	2	2	2	115	3L	12957619	12957639	GCTACGAAACCTTATATGTGG		58	12957461	12957479	TATTTAAGGGACCGCACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11006	FBgn0027534	FBtr0075927,FBtr0075929,FBtr0114506,FBtr0075928	2	4	4	85	3L	12803756	12803840	TGATGAAGATCGATGAGAAGG		59	12803887	12803905	CAATGATAGAACGCCTGTG		58	NA	
Drosophila melanogaster	50	snRNP69D	FBgn0016940	FBtr0075952	1	1	1	98	3L	12727056	12727074	GAAGCTAAGTCACGAGACC		59	12726976	12726994	TTCAGGTGAGTGTTCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32111	FBgn0052111	FBtr0075910	1	1	1	91	3L	12638264	12638282	ATATCGTCATTCAGCTTCG		57	12638394	12638471	GTGAGATATCATGTTCTCTAGC		57	NA	InUTR
Drosophila melanogaster	50	Gap69C	FBgn0020655	FBtr0075981	2	1	1	102	3L	12409094	12409384	CTCGACAAAGATTAAAGAGGG		58	12408937	12408956	ATTATTCCAACCTCGTTTGC		58	NA	
Drosophila melanogaster	50	CG10361	FBgn0036208	FBtr0076084	2	1	1	121	3L	11793262	11793280	CAACTACTTAGGACTGGCG		59	11793098	11793116	GCTTGTGTATATCCTGCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11726	FBgn0036156	FBtr0076172	2	1	1	60	3L	11388198	11388217	ATCCGTTCTCTAACCATTCC		59	11388240	11388258	TTTCCACATACGCAAATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7888	FBgn0036116	FBtr0076200,FBtr0076199,FBtr0076201	2	3	3	83	3L	11052193	11052269	GGTGTTAAGCAACTTTGTG		57	11052316	11052334	AGTACGATCTCCTTGAGTG		58	NA	
Drosophila melanogaster	50	CG34050	FBgn0054050	FBtr0100105	1	1	1	60	3L	10938129	10938147	ACAATTTGCTTGATAGGCG		58	10938171	10938189	ACAGATAGCACGAGTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12362	FBgn0036082	FBtr0076282,FBtr0076281	3	2	2	60	3L	10406346	10406365	CGATGAGGTGAATAATGTCC		58	10406385	10406406	GTGATTTAGGATAATACGCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nudE	FBgn0036059	FBtr0113158,FBtr0113159	3	2	4	96	3L	9894107	9894449	ATTCGCTTAAGAATCCCGA		58	9894509	9894527	TTTCTTAACATGTCGGCCA		59	NA	
Drosophila melanogaster	50	CG6707	FBgn0036058	FBtr0076356,FBtr0076358,FBtr0076357	3	3	3	83	3L	9889096	9889114	CTGGTGTTCCTCATCACAG		59	9888950	9888969	GTAGAGGAAGTACATGCCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tequila	FBgn0023479	FBtr0076526,FBtr0076525,FBtr0076528	2	3	4	100	3L	9082961	9082979	AAAGATGAGGCTAACTGCC		59	9083042	9083131	CATTGACCATTAGCCTTGAC		58	NA	
Drosophila melanogaster	50	Argk	FBgn0000116	FBtr0112791	3	1	6	107	3L	9043448	9057571	GAAATACGCAAACAAGACAC		57	9043360	9043378	GTACTTCTTCAACAGCGAC		58	NA	Nonspecific
Drosophila melanogaster	50	CG5068	FBgn0035951	FBtr0076519	1	1	1	159	3L	8980480	8980835	TGATACGTTGGCTAAGGAC		59	8980958	8980976	ATCGATGACGGTTATTCCA		58	NA	
Drosophila melanogaster	50	CG32024	FBgn0052024	FBtr0076580	3	1	1	60	3L	8800787	8800806	CGAGTGCAATATCTGTTCCT		59	8800827	8800847	TTGGTACTGATTCTTGGACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6694	FBgn0035900	FBtr0076656	3	1	1	100	3L	8501329	8501444	CATCTGTGTCAGCTTTCTG		58	8501247	8501265	GCAAATAGTACCGACAGAC		57	NA	
Drosophila melanogaster	50	CG7081	FBgn0035876	FBtr0076602	3	1	1	94	3L	8332836	8332854	TGGACTACATTAGTCTGCG		58	8332910	8332984	GAGGATTTCCATAAATCCTCC		57	NA	
Drosophila melanogaster	50	CG7194	FBgn0035868	FBtr0076714	2	1	1	60	3L	8296410	8296428	TACTTCAAGACTGGCTACG		58	8296368	8296388	GCAATTGTCTGATTAGACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076777	2	1	8	84	3L	7813118	7846291	GCATTAATGGCAGGAAATCTC		59	7811290	7811311	CAGATGATCTCTTTGCTATTCG		59	NA	
Drosophila melanogaster	50	CG32369	FBgn0052369	FBtr0076783	1	1	2	82	3L	7774079	7774100	CTGAGCCATTATCAAAGTTCTC		59	7773960	7774036	CTTAAGTAGTGGGCCTTGG		59	NA	
Drosophila melanogaster	50	Hn	FBgn0001208	FBtr0100225,FBtr0076811	2	2	2	114	3L	7755647	7755730	ATTGTCCACCATCTTCTGG		59	7755808	7755826	GAGGCAATACTCCAGTTCC		59	NA	
Drosophila melanogaster	50	CG8219	FBgn0035693	FBtr0077003	3	1	1	110	3L	6196516	6196598	GATTCGAAGAATTATCGAAGGC		59	6196669	6196687	TCGTACAGTTCGATTAGCC		59	NA	
Drosophila melanogaster	50	l(3)mbn	FBgn0002440	FBtr0100355,FBtr0077062	2	2	2	89	3L	6117829	6117915	ATGTACCCTCAAATGGTGG		59	6117758	6117776	CTCCTGCACCGATAATACC		59	NA	
Drosophila melanogaster	50	Pole2	FBgn0035644	FBtr0077081	1	1	1	60	3L	5889892	5889913	TAAAGAGGGCAAGTTCTATGTC		59	5889853	5889872	TCCAGTGAGATCTAACTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112712,FBtr0112708	2	2	8	89	3L	5670041	5697035	CATCAGAGATTTCGGACGA		59	5697088	5697106	TATATGGTGACGCCATGAC		59	NA	
Drosophila melanogaster	50	sinu	FBgn0010894	FBtr0077136	3	1	1	62	3L	5554199	5554218	GTTCTTCTACACTTTGGCCT		59	5554156	5554174	ATGAAGACCAGTACTCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13705	FBgn0035582	FBtr0073352	1	1	1	60	3L	4897684	4897702	GTTACCGTTACAAGACCGT		59	4897726	4897744	GGAAGCTCATTGACATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13712	FBgn0035570	FBtr0073364	3	1	1	263	3L	4709828	4709846	ATTCCAGCTACAGCAACTG		59	4709583	4709602	ATCTGTCCCTATATTCCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DopEcR	FBgn0035538	FBtr0100185,FBtr0100186,FBtr0073337	3	3	3	60	3L	4379449	4379467	AAACTGAGCAATGTCAAGG		58	4371891	4379425	CTAATTGTGCGCATCTGAG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG11582	FBgn0035525	FBtr0073241	3	1	1	61	3L	4283213	4283232	TGGAATAAGTGTCGACAGAC		59	4283171	4283189	TCATGAAACCACCTGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14998	FBgn0035500	FBtr0113135	1	1	6	97	3L	4127159	4128322	TGTTAGTGAATGCAGGCTC		59	4127080	4127098	CATGTTTGTCGATGTGGAC		59	NA	
Drosophila melanogaster	50	scrt	FBgn0004880	FBtr0073165	1	1	1	60	3L	3986870	3986888	CTATCGAAGAAGGGTACCG		58	3986911	3986930	CAGATCCAGGATAGCATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10863	FBgn0027552	FBtr0073171	3	1	1	85	3L	3941429	3941448	ACATCTATGATGCCAAGGTG		59	3941296	3941384	AATCTCAATCAGATATCGGAGC		59	NA	
Drosophila melanogaster	50	Awh	FBgn0013751	FBtr0073156	3	1	2	106	3L	3860664	3860682	GCGTCATATTAACCTGCAG		58	3860752	3860899	TAGAGGATTCATGAGTCGG		57	NA	
Drosophila melanogaster	50	enc	FBgn0004875	FBtr0073153	2	1	4	229	3L	3832330	3832348	TATCACTATGAGCCCAGAG		57	3832541	3832617	TCTGATTGATGAAAGACGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG10357	FBgn0035453	FBtr0073137	3	1	1	102	3L	3616069	3616087	ACTGTGGACTTCTATCCGA		59	3616153	3616230	TGCAACTATAAGCCTCGTG		59	NA	
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0110922,FBtr0073132,FBtr0073135,FBtr0110924,FBtr0073131,FBtr0073134,FBtr0110923,FBtr0110920,FBtr0110925,FBtr0073133,FBtr0110921	1	11	11	117	3L	3552857	3578300	CAGATTAACAATTTCCCGCG		59	3578377	3578398	GTTGTATGGAACTTTGTTACCG		59	NA	
Drosophila melanogaster	50	kst	FBgn0004167	FBtr0073071	3	1	4	197	3L	3366301	3367161	AGACAATCGGGTTCTTCAG		59	3367621	3367639	GGACACGGATGATATCGAC		59	NA	
Drosophila melanogaster	50	CG16753	FBgn0035393	FBtr0072990	1	1	1	92	3L	3055322	3055340	ACAAGAAGCTGCTCAAGAG		59	3055394	3055414	TTAGATCTCCGACAACTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pxn	FBgn0011828	FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951	1	4	5	110	3L	2607768	2607786	TCAAGAATGTGACCATCCC		59	2604263	2607695	CCAAATCCACGTTGTTTCTG		59	NA	
Drosophila melanogaster	50	CG5707	FBgn0026593	FBtr0072912	2	1	1	60	3L	2189702	2189720	AGGACCATCAAGAATGTGC		59	2189660	2189679	CGTCTATGTAGTTCGACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7991	FBgn0035260	FBtr0072765	1	1	1	169	3L	1712776	1712853	ATTAAGGGATGCCTATTGTCC		59	1712984	1713002	CATAGTCGGAGCTGTACTC		58	NA	
Drosophila melanogaster	50	metl	FBgn0035247	FBtr0072813,FBtr0072814	1	2	2	60	3L	1638099	1638117	GACTGCAAGTTAATCGCTG		59	1638057	1638076	AACTTTGTCTGAATCCACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	n-syb	FBgn0013342	FBtr0072815,FBtr0072817,FBtr0072816,FBtr0072819	1	4	5	271	3L	1635219	1635237	ATGATGATCATCATGGGCG		59	1632235	1632253	TCGAGAAACTTTCGTCCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Psa	FBgn0035226	FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697	1	6	6	113	3L	1520667	1520685	GAGACCTTTGTGCTAGTGG		59	1520761	1521150	CATAGTTACCAGATTGCCGA		59	NA	
Drosophila melanogaster	50	mtacp1	FBgn0011361	FBtr0072677	3	1	2	213	3L	1330899	1330917	ATCGAGGACATCAAGTTCC		59	1331409	1331427	ACTTAATAATGTCGGCAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG34264	FBgn0085293	FBtr0112459	2	1	1	65	3L	317252	317270	GGACGACCCTAATATGGTG		59	317299	317317	AAGTTTCGCTTCAGAAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13882	FBgn0035126	FBtr0072509	2	1	1	91	3L	290252	290271	TAAATCTTGAGGTTGCAGTG		58	290325	290765	GAACTCCGCTTTAACACTG		58	NA	
Drosophila melanogaster	50	CG12313	FBgn0035124	FBtr0072507	1	1	1	60	3L	276333	276351	CGACAATGACACTACCCTC		59	276374	276393	CTCACTCGTTCCTAGAACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16940	FBgn0035111	FBtr0072486,FBtr0072485	1	2	3	84	3L	213967	214040	TTATCTCTTGCGGATGGTG		59	214088	214106	ATATCACGACCACGTTGTC		59	NA	
Drosophila melanogaster	50	5SrRNA:CR33411	FBgn0053411	FBtr0086403	1	1	1	62	2R	15632320	15632338	AATACATCGGTTCTCGTCC		59	15632276	15632294	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kr	FBgn0001325	FBtr0072449	1	1	1	60	2R	21115758	21115779	GTCCCTATACTTGTGAAATCTG		58	21115800	21115818	TGGGACTTAAGCTGATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	zip	FBgn0005634	FBtr0072398,FBtr0072399	3	2	4	101	2R	20885211	20885809	GTGCTCATTAACTTCTCGG		58	20885128	20885149	CATCTTCAATCCATTGACTACC		58	NA	
Drosophila melanogaster	50	slik	FBgn0035001	FBtr0072365,FBtr0072363,FBtr0100470,FBtr0072364,FBtr0072366	3	5	5	82	2R	20287856	20287941	CCTTAGTCAAAGATCCGCA		59	20287792	20287810	CTTGGCATCCAGATTTCTG		58	NA	
Drosophila melanogaster	50	CG3328	FBgn0034985	FBtr0072257	2	1	1	175	2R	20059785	20059858	CAATTGTCAGTCCGTTTGC		59	20059996	20060015	AGGTCTCATTGCCTATTGAG		59	NA	
Drosophila melanogaster	50	CG13568	FBgn0034965	FBtr0113115	3	1	2	92	2R	19941236	19941325	GGTTTCCTTACAGCTTCTC		57	19941162	19941182	GATCCTTTGGGTTGAATAGAG		58	NA	
Drosophila melanogaster	50	CG13567	FBgn0034963	FBtr0072189	2	1	2	152	2R	19924622	19924641	CCCACTGAGTTTATTCACCT		59	19924429	19924509	GAATAGTTCCCTAACGTTCAC		58	NA	
Drosophila melanogaster	50	MAN1	FBgn0034962	FBtr0072166,FBtr0072167	2	2	2	60	2R	19922796	19922815	GAAGTTCAACTATCCCACTG		57	19922836	19922856	AGTTAGCCTTTCTTTCCTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fmo-1	FBgn0034943	FBtr0072150	2	1	1	135	2R	19851708	19851726	TACTACAACGGATCCAACG		59	19851824	19851907	AATAGTCGATTTGCTTGGGA		59	NA	
Drosophila melanogaster	50	CG13551	FBgn0040660	FBtr0072034,FBtr0072033,FBtr0072035	2	3	3	251	2R	19265691	19270146	TACAAGAAGCAAAGGGAGC		59	19265458	19265476	GGTAAGTGGTAGTGAGCAC		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG13551	FBgn0040660	FBtr0072034,FBtr0072033,FBtr0072035	3	3	3	194	2R	19265691	19270146	TACAAGAAGCAAAGGGAGC		59	19265515	19265533	AATGTCTCGAGTTCATCCG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	Gr59c	FBgn0041235	FBtr0071977	1	1	1	60	2R	18990427	18990447	CTCCATCTACTTTAGCGTCTG		59	18990387	18990405	GTATGTAGAGCCGAATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PIP5K59B	FBgn0034789	FBtr0110862,FBtr0071900	3	2	3	166	2R	18767408	18767426	TCTGGATACATTACTGGCG		58	18767555	18768009	TTAGTTGATCGAGATCACCA		58	NA	
Drosophila melanogaster	50	CG3649	FBgn0034785	FBtr0071896	3	1	1	96	2R	18735015	18735033	GACTCCTGTTTGGGATGAG		59	18735093	18735161	GATCGATCCGACTCTTTGG		59	NA	
Drosophila melanogaster	50	CG30270	FBgn0061435	FBtr0089763,FBtr0089762	3	2	2	60	2R	18672243	18672261	CGCATCTACAAGACCTACC		59	18672283	18672303	TAAGTCGTTCGTAATACTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30275	FBgn0050275	FBtr0071874	3	1	4	125	2R	18595820	18595838	ATCCACTTTGTGGAAACCT		59	18595927	18596200	GTTATCTTCGGCCCTATCC		59	NA	
Drosophila melanogaster	50	Rtf1	FBgn0034722	FBtr0071820	1	1	1	172	2R	18264935	18264953	GAAGATGACATGCAACTGG		58	18265089	18265164	TTCGTATTGACTGGTAGCG		59	NA	
Drosophila melanogaster	50	CG34207	FBgn0085236	FBtr0112400	3	1	1	60	2R	18217001	18217021	GAAGATAACGAATTGGCACTC		59	18216961	18216979	CTTCCTCCTTTACGTAGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gp150	FBgn0013272	FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815	3	4	4	83	2R	18213223	18213296	GAAGTCCAAGAGCAAATCC		58	18213341	18213361	TCGTCGTAGTCATATTGAGAG		58	NA	
Drosophila melanogaster	50	Gp150	FBgn0013272	FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815	3	4	4	83	2R	18213223	18213296	GAAGTCCAAGAGCAAATCC		58	18213341	18213361	TCGTCGTAGTCATATTGAGAG		58	NA	
Drosophila melanogaster	50	Oatp58Dc	FBgn0034716	FBtr0113105,FBtr0071777	1	2	2	80	2R	18113468	18113488	CTATACTACACGTTGGGAGTG		59	18112902	18113429	GTATGAAAGACTCAACAAAGCC		59	NA	
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089710,FBtr0089703	1	2	9	129	2R	17399440	17399460	CCGTCTAGATCCTACAAACTC		59	17399675	17399908	GAAGTACTTGACGTAGCCC		59	NA	
Drosophila melanogaster	50	Treh	FBgn0003748	FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536	1	6	6	80	2R	16972826	16972845	CTTTAATGCCATGATGGAGG		58	16972887	16972966	GCACTGAAGTACTTATCGAC		58	NA	
Drosophila melanogaster	50	Act57B	FBgn0000044	FBtr0100177	2	1	2	94	2R	16831678	16831696	GAACGGATTATCGTCTTGG		57	16831753	16831772	ACTAGATGCGGGAATATCCT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Obp57c	FBgn0034509	FBtr0113099,FBtr0086292	3	2	2	60	2R	16391191	16391211	TATGTATCTTGACTGTCAGCG		59	16391295	16391313	TTGGTTTCCTCCAGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11192	FBgn0034507	FBtr0086296	2	1	1	65	2R	16241851	16241870	TATATGGCATCGTTTCCTGG		59	16241805	16241823	CATTGGTGTACACTCCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18367	FBgn0034460	FBtr0086469	3	1	1	61	2R	15524251	15524269	CTTCAAGAAGCAGTTCAGC		59	15524294	15524312	TCAGCCATGACTTGATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494	2	7	7	151	2R	15418201	15419688	TATTGAGGGTAAAGGCACC		58	15418068	15418088	CTCAATTGTAGATGTCCACCT		59	NA	
Drosophila melanogaster	50	CG15904	FBgn0034458	FBtr0086497	2	1	1	60	2R	15400864	15400884	GAGTTCTTCCACAATTTCTGG		59	15400824	15400845	CTCTCGTTATTATCAAGTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15105	FBgn0034412	FBtr0086572,FBtr0114622,FBtr0086573	3	3	3	114	2R	14882548	14882566	GATACCCTACAATGGCGTC		59	14882642	14884407	CATAATTTGACCTGATGTGGG		59	NA	
Drosophila melanogaster	50	CG15100	FBgn0034401	FBtr0086627	3	1	1	108	2R	14735331	14735409	CTCAATGCTGAGAAACCAC		58	14735241	14735260	TAAGTTCGTCGATGAAGGAC		59	NA	
Drosophila melanogaster	50	l(2)03709	FBgn0010551	FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616	3	6	6	192	2R	14707869	14707887	AGATGATCAACATCTCGCT		58	14708043	14708123	ATGAGTAGGGATACCTGCT		59	NA	
Drosophila melanogaster	50	CG5224	FBgn0034354	FBtr0086697	3	1	1	202	2R	14391271	14391289	CATCCTCTATTACGCTCCC		59	14391851	14391869	AGATAATGTGCGAATCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30116	FBgn0028496	FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718	1	4	4	80	2R	14363668	14363687	GAGGCTATGTTGGTTAAGTG		58	14363165	14363627	GTTCATAAGGCGATAATCCTG		58	NA	
Drosophila melanogaster	50	CG30116	FBgn0028496	FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718	1	4	4	80	2R	14363668	14363687	GAGGCTATGTTGGTTAAGTG		58	14363165	14363627	GTTCATAAGGCGATAATCCTG		58	NA	
Drosophila melanogaster	50	fj	FBgn0000658	FBtr0086754	1	1	1	60	2R	14122487	14122506	GAATACGGATCAGATTCAGG		57	14122529	14122547	TATGTTTAAGAGCTGGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dip3	FBgn0040465	FBtr0086734	1	1	1	136	2R	14016521	14016539	CTATGATGTCAGCCATCCG		59	14016715	14016734	CCTGCAGATAGTTGTATCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34005	FBgn0054005	FBtr0100060	3	1	1	135	2R	13935949	13935967	TCAGGAGGAGATTCGAGAG		59	13936121	13936140	TATACTGTAGACATTCGCCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	grh	FBgn0004586	FBtr0090012	2	1	6	196	2R	13727107	13727125	AGGATCACATACTGGACCA		59	13727285	13728261	GCAGTAATCCGCATTTAGC		59	NA	
Drosophila melanogaster	50	CG4996	FBgn0034271	FBtr0086864	2	1	1	87	2R	13627854	13627932	GAACTCAAGAAAGTTCTCAACG		59	13627979	13627998	TAAGAACCTTCTGCTGAGTG		59	NA	
Drosophila melanogaster	50	CG6424	FBgn0028494	FBtr0086887,FBtr0086886	1	2	2	121	2R	13592685	13593866	TCGAGCAGAATTTGAACGA		59	13592582	13592600	CTCAAAGTACAGCAGTCCA		59	NA	
Drosophila melanogaster	50	CG4966	FBgn0034261	FBtr0086840,FBtr0086839	2	2	2	83	2R	13577313	13577390	ATCTTGAGATCCAACGACTC		59	13577436	13577454	GATCTGATGGGTAGGTTCC		58	NA	
Drosophila melanogaster	50	qkr54B	FBgn0022987	FBtr0086925,FBtr0086923	2	2	3	81	2R	13359114	13359202	GCATCACAGCTATAGGAGC		59	13359244	13359265	CAATATGGACATCACTTTCTGC		59	NA	
Drosophila melanogaster	50	CG34415	FBgn0085444	FBtr0112692,FBtr0112691	3	2	2	71	2R	12837688	12837706	CTGATCGATTGGTTTGTGC		59	12837574	12837593	GGTCTCTACAGGAGAAAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Picot	FBgn0024315	FBtr0087115,FBtr0087114	1	2	2	80	2R	12544694	12544784	TCGGGATATTCCTATTGATGAC		59	12544635	12544653	AAGGACGACAAGATGTAGC		59	NA	
Drosophila melanogaster	50	CG4439	FBgn0034132	FBtr0087087	2	1	1	60	2R	12379672	12379691	CAGAATCTCAACTCCTTCCT		58	12379714	12379732	CTAGGATAATGGGTGGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7997	FBgn0034117	FBtr0087172,FBtr0087171	3	2	2	99	2R	12229052	12229071	TAATGTGCAGGATCTGTACG		59	12228913	12228991	GTAGAAAGTTACGCCATTGG		58	NA	
Drosophila melanogaster	50	CG7798	FBgn0034092	FBtr0087192	3	1	1	62	2R	12109785	12109804	CGAAGTACATCAGGAAACAG		58	12109742	12109760	CCTGACATCGATTGTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8445	FBgn0034088	FBtr0087246,FBtr0087245	1	2	2	210	2R	12083400	12083418	AAATATGAACGCTGCTGGA		59	12083149	12083226	CTGTACATCGTGACATCCA		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Lis-1	FBgn0015754	FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240	1	6	6	63	2R	12070571	12070592	GCTCAAATGATCAGACAATACG		59	12070615	12070701	CGTAATTCAACCTTGCAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Dg	FBgn0034072	FBtr0087258,FBtr0087257,FBtr0087256	2	3	3	101	2R	11972594	11972679	CTTTATGGCCTACCTCTGG		59	11972511	11972529	ACTTATCTCCACGGTTTCC		58	NA	
Drosophila melanogaster	50	CG8315	FBgn0034058	FBtr0087267	1	1	1	60	2R	11879338	11879358	AATAAGTACTGGCTCTTCTCG		59	11879298	11879316	TCAGGATCTCGTAGAAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30084	FBgn0083919	FBtr0113484,FBtr0111048,FBtr0100387,FBtr0087315	1	4	6	92	2R	11652754	11660560	ATAATGTGTACCGAGGTGC		59	11652680	11652699	CTGCCTTATTCAGGATACCC		59	NA	
Drosophila melanogaster	50	CG12960	FBgn0034023	FBtr0087327	3	1	1	60	2R	11387762	11387780	GCGAGACTAAGATGATGGG		59	11387804	11387822	TTCAGTTTCTGGGCATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8617	FBgn0033925	FBtr0087561	3	1	1	67	2R	10243738	10243756	CGATTTGAGCATCATGAGC		59	10243689	10243707	TCATTGAAGCTCATTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ih	FBgn0028428	FBtr0100370,FBtr0100369,FBtr0100371	1	3	4	101	2R	10179879	10184219	AGGTCTATTTCCTCAATATGGC		59	10184281	10184299	CTAAGAACTGCAAGCAACC		59	NA	
Drosophila melanogaster	50	Ih	FBgn0028428	FBtr0100370,FBtr0100369,FBtr0100371	1	3	4	101	2R	10179879	10184219	AGGTCTATTTCCTCAATATGGC		59	10184281	10184299	CTAAGAACTGCAAGCAACC		59	NA	
Drosophila melanogaster	50	DJ-1alpha	FBgn0033885	FBtr0087615	1	1	1	290	2R	9830543	9830561	ATACTTCACTGGAAGAGGC		58	9830215	9830233	TTATGTTGCCATCCTGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	synaptogyrin	FBgn0033876	FBtr0087645	3	1	1	60	2R	9731512	9731530	GAGCAGAAAGCGTTATGTC		58	9731399	9731417	GTACATGAATGTCCAGAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	IM10	FBgn0033835	FBtr0087654,FBtr0087655	2	2	2	60	2R	9295341	9295360	TTTGGGACAATAATGTCTCC		57	9295383	9295401	CTATCGATTGTGACAGTGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	bic	FBgn0000181	FBtr0087783,FBtr0087782	3	2	2	143	2R	8757979	8757997	GAAGAAGATCGTCCACTCC		59	8758103	8758122	GGATTGTTGAAGTGGATGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30051	FBgn0050051	FBtr0114521	2	1	1	94	2R	8323931	8324024	TTCCTAGTACTGTTGCTGG		58	8324081	8324100	TCGAAGTATTGTTGTCTGGA		58	NA	
Drosophila melanogaster	50	CG30050	FBgn0050050	FBtr0087923	1	1	1	98	2R	8296846	8296864	AAGCGGAAGATTCTCATCG		59	8296924	8296994	CGACTCAAATTTACCCTTTGG		59	NA	
Drosophila melanogaster	50	CG30048	FBgn0050048	FBtr0100374,FBtr0087919	1	2	2	60	2R	8285320	8285339	CATCCACTCACAAACTTCAG		58	8285362	8285380	ATTTCTCTTACGGATGGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13169	FBgn0033704	FBtr0087997	3	1	1	191	2R	8128916	8128934	AAAGGAATTGCTCATCCAC		57	8129152	8130051	TTTCAATATCACTTCCGCAG		58	NA	
Drosophila melanogaster	50	CG13170	FBgn0033703	FBtr0087996	3	1	1	89	2R	8127923	8127941	CTTCTGAGTCTGTCGACAG		59	8127994	8128012	TAACTTGGGTGTGGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rep3	FBgn0028407	FBtr0087980,FBtr0087979	1	2	2	124	2R	7943777	7943795	GGATAGCATCACCTTGGAG		59	7943883	7949022	TGTCCTTGATCTTGAAGGG		58	NA	
Drosophila melanogaster	50	ERp60	FBgn0033663	FBtr0088059,FBtr0088058	3	2	2	84	2R	7776136	7776155	ACAAGTTCGAGTCATCTTCC		59	7776007	7776089	AGACCATGGAAGTTCTCCT		59	NA	
Drosophila melanogaster	50	inv	FBgn0001269	FBtr0088070,FBtr0088067	3	2	4	108	2R	7394461	7394532	ATTTATGGAGTATCCGCCG		59	7394603	7394622	ACACAATCATAGCTCTTCGG		59	NA	InUTR
Drosophila melanogaster	50	sprt	FBgn0082585	FBtr0088146	3	1	1	93	2R	7274233	7274252	TAAACAGACTGAAGACGGAG		59	7274093	7274179	TCTATGTTGTCTGTGATGTCC		59	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	2	9	9	198	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349188	6349206	CTTAGTACAGTCCACAGCC		59	NA	
Drosophila melanogaster	50	CG12900	FBgn0033515	FBtr0088323	2	1	1	60	2R	6266224	6266243	CAAGACGTAAGAAGATCCTG		57	6266183	6266204	GACAGAATGCAACTAAATACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TER94	FBgn0024923	FBtr0112905,FBtr0088391,FBtr0112906,FBtr0088392	3	4	4	102	2R	5880410	5880494	GACAGAACTTCAGATTCCC		57	5880560	5880578	CTGTAAAGATCATCGTCGC		58	NA	
Drosophila melanogaster	50	CG1441	FBgn0033464	FBtr0088449,FBtr0088448	2	2	2	106	2R	5786879	5786897	AGTCAGACGAATCGATTCC		59	5786721	5786740	ATAGAGCATGTAGAGGATGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1441	FBgn0033464	FBtr0088449,FBtr0088448	3	2	2	107	2R	5786879	5786897	AGTCAGACGAATCGATTCC		59	5786720	5786740	TATAGAGCATGTAGAGGATGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33757	FBgn0053757	FBtr0091758	2	1	1	75	2R	5342047	5342065	ACCTTACATCCCAATGACG		59	5341937	5341955	AAATTCGAGGTCGGTACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8046	FBgn0033388	FBtr0088620	1	1	2	82	2R	5051972	5052051	GAAACAAAGAGAATTGAGGAGC		59	5051911	5051929	GGAATAAAGCACTCCACCA		59	NA	
Drosophila melanogaster	50	CG8197	FBgn0033369	FBtr0088661	3	1	1	60	2R	4949143	4949163	GGATCATCGTTAACTATCTGC		58	4949103	4949121	ACCAAGCTGGAAATTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14747	FBgn0033306	FBtr0088732	2	1	1	80	2R	4468409	4468539	AAGGGAATAACAACCGACC		59	4468347	4468366	TTTCATCCATGGGATAACCA		58	NA	
Drosophila melanogaster	50	CG12826	FBgn0033207	FBtr0088943	3	1	1	91	2R	3558415	3558433	ATTGTACTCGTGGATCTGC		59	3558342	3558361	TTTCGTAGCTATCCAAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1620	FBgn0033183	FBtr0088983	2	1	1	69	2R	3382379	3382399	AGGACTTCTATCAGATACGTC		58	3382262	3382280	TAGTAGAAATGGACCAGCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG30502	FBgn0050502	FBtr0089001	1	1	1	126	2R	3334678	3336933	ATAGTATGGAGCACCTAGTG		57	3334571	3334589	TACCAAGGGTCAAAGAGAC		58	NA	
Drosophila melanogaster	50	CG1707	FBgn0033162	FBtr0089013	3	1	1	143	2R	3283096	3283114	TTCTCGCTGTACTTTCTGG		59	3281430	3281449	GTAATTCTGATCCGGATCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111061	3	1	60	99	2R	3244103	3244121	GCAGGATAAGTTTGGTGTG		58	3236471	3244041	CTTGTACCATCTAAACGCTG		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111102,FBtr0111095	2	2	60	97	2R	3236477	3243205	CGTGCCCTTCTATAGATGG		59	3236398	3236416	TGAGAGTACCAGAGACCTG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111056	3	1	60	81	2R	3226195	3226214	GCAAATATAGTTGTCGAGCG		59	3219873	3226152	CATCTGGGAGGTACATTCAC		59	NA	
Drosophila melanogaster	50	esn	FBgn0028642	FBtr0089039,FBtr0089038	1	2	2	161	2R	3012688	3012927	TGCGATGAGATCATCTTCTC		59	3013051	3013069	GAACATTGTGTCGAAGCAG		59	NA	
Drosophila melanogaster	50	Tsp42Ef	FBgn0033127	FBtr0089023	2	1	1	131	2R	2914540	2914558	AACCTAAACGAGATCGGTC		59	2914652	2914732	AATAATGAACGTCACTGTGC		58	NA	
Drosophila melanogaster	50	CG33558	FBgn0053558	FBtr0113470	3	1	2	149	2R	2814318	2816023	CACTTTGACGACTATGCCA		59	2814187	2814205	GTTGATGAGATTTCGCACG		59	NA	
Drosophila melanogaster	50	CG7849	FBgn0033060	FBtr0085977	2	1	2	140	2R	1964754	1964774	ACATAACATAGGAGAGCAGAC		59	1964876	1964943	CTGTTGATCCCAAAGAGCA		59	NA	
Drosophila melanogaster	50	CG30438	FBgn0050438	FBtr0086068,FBtr0086069,FBtr0086070	3	3	4	98	2R	1414858	1414876	GGACATCCTAATGGCTACG		59	1416315	1426768	AAGGTAATATTGTGACCTCTGG		59	NA	
Drosophila melanogaster	50	CG41441	FBgn0084006	FBtr0111282	2	1	1	132	2R	969953	969971	AGAACTCATTCCGTTGTCC		59	970207	970225	GATCTTAAAGCGAACCTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	nrv3	FBgn0032946	FBtr0081520,FBtr0081518,FBtr0081521,FBtr0081519	1	4	4	88	2L	21385322	21385341	ACATTAGTTTGGTACGAGTC		57	21385391	21388515	AGATCTTGGTACGATTTCAG		57	NA	
Drosophila melanogaster	50	CG9259	FBgn0032913	FBtr0081464	3	1	1	60	2L	21090657	21090676	TTATTCTACCACCTCACTGC		59	21090699	21090717	AAGTCGTTAAAGCCATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9266	FBgn0032909	FBtr0081434	2	1	1	77	2L	20966706	20966724	CTAGCAAATACCCAAGTGG		57	20966647	20966665	TAGGATTAGGTGGGTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1962	FBgn0032876	FBtr0081399,FBtr0081400,FBtr0081401	2	3	3	60	2L	20680493	20680512	TAGTGGTGCGGATTATAAGG		58	20680452	20680470	GCTAGAGTTGGGATTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18858	FBgn0042175	FBtr0081364	3	1	1	96	2L	20458123	20458141	TATAGCCAATGAGCTGGTG		59	20457977	20458063	CTGTTGGTTCTCATTTGGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG40341	FBgn0058341	FBtr0100675	1	1	1	166	2L	20248297	20248315	CAAGAAGTCCAACGAAAGC		59	20253481	20253502	CGCTTTCTGATTTCTTACTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lok	FBgn0019686	FBtr0081330,FBtr0081329	1	2	3	291	2L	20061999	20062152	GATCAAATCGCTGGATCTC		58	20062645	20062744	GAATACAAAGGCTTTGTACG		57	NA	DesignRelaxed
Drosophila melanogaster	50	sick	FBgn0085372	FBtr0112547,FBtr0112549,FBtr0112548	1	3	3	84	2L	19926500	19928629	GCAATAGCATAAGATCGACG		58	19928676	19928694	TAGTAGGGCTCGATTTCCA		59	NA	
Drosophila melanogaster	50	CG13962	FBgn0032824	FBtr0081314	1	1	1	60	2L	19813902	19813920	CTGATATACAGCAGCACGA		59	19813860	19813880	TAGTACCTATCCTTGAAGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bsh	FBgn0000529	FBtr0089320,FBtr0089319	1	2	2	72	2L	19767866	19767884	CTGAATGGAGGTAGTGGTG		59	19767812	19767830	GAAGAAATCCGTGATCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10189	FBgn0032793	FBtr0081284	3	1	1	60	2L	19491865	19491884	TTCACTGTCGATCTACACTG		59	19491824	19491842	GAGTACTCAATAGCCAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fon	FBgn0032773	FBtr0081222	1	1	2	127	2L	19385700	19386087	GATTTCCAACAAAGTTTGGG		57	19385286	19385304	AAGCTACCGCTATAACCTC		58	NA	
Drosophila melanogaster	50	CG17349	FBgn0032771	FBtr0081198	1	1	1	265	2L	19370853	19370930	AAACCTCCTCCAAAGATCG		59	19371159	19371177	ATGATGAGGTCAATGGCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10211	FBgn0032685	FBtr0081069	1	1	1	83	2L	18528767	18528847	GGAGGACAATTATCTGAATTCC		58	18528891	18528909	TCTTCAGGGTTTACTTGCC		59	NA	
Drosophila melanogaster	50	mdy	FBgn0004797	FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917	1	4	4	86	2L	16820786	16820804	ATAACGCCCTAATCCTGAG		58	16820919	16825419	CAATTATTTCCATGGCTAGACC		59	NA	
Drosophila melanogaster	50	mdy	FBgn0004797	FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917	2	4	4	87	2L	16820785	16820804	CATAACGCCCTAATCCTGAG		59	16820919	16825419	CAATTATTTCCATGGCTAGACC		59	NA	
Drosophila melanogaster	50	CG31812	FBgn0051812	FBtr0080890	1	1	1	60	2L	16730429	16730449	CCTAAGAAGATAAGCTCTTCC		57	16730469	16730489	GCACAATAGTCTCTGTTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trpgamma	FBgn0032593	FBtr0080946,FBtr0080945,FBtr0114470	3	3	3	81	2L	16665214	16665233	TCGAGCAAGAATATTTGTCC		57	16665101	16665173	GCTTAAGGGTCTTATCATTCAG		58	NA	
Drosophila melanogaster	50	CG13260	FBgn0032589	FBtr0080869	2	1	1	60	2L	16558568	16558587	GCTATGCTCGCATTATAGAC		58	16558610	16558628	TCGCTTTCGATAACATGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4440	FBgn0040984	FBtr0080835	2	1	1	80	2L	16329963	16329982	TACTCTTACTCCAGTATCGC		58	16330084	16330102	AAACAGAGCAATCAGACAG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4935	FBgn0028897	FBtr0080825	2	1	1	110	2L	16263172	16263272	TTCGCATAAGTGATAATGGC		58	16263345	16263363	GCAAATCTGTCGAGAAGAC		58	NA	
Drosophila melanogaster	50	CG31826	FBgn0051826	FBtr0080762	1	1	1	138	2L	15772567	15772586	ACCTTTGGACGATATTTCGT		59	15772389	15772466	TTAGGTCCTCGCATTTCTC		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Ku80	FBgn0041627	FBtr0080763	1	1	1	80	2L	15770836	15770912	GATTCTTAAGGACAAGATCGTG		58	15770777	15770795	TTTATTTCATCGGTGTCGC		58	NA	
Drosophila melanogaster	50	Mst35Ba	FBgn0013300	FBtr0080682	1	1	1	129	2L	14879244	14879262	TAGAAAGGATCGATACCGC		58	14879084	14879102	GGAAAGGATATGCCTGGAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	elB	FBgn0004858	FBtr0080636,FBtr0080635	2	2	3	282	2L	14391996	14392244	CCTATTATCCACCCGTTGG		59	14391732	14391750	TTTATGTAGTGCGGACTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32972	FBgn0028905	FBtr0080600	1	1	2	84	2L	14164078	14164098	TTTCTACCAGGTTAAGGACTC		58	14163422	14164034	GCTATCGTTCTTAATCTTGCC		59	NA	
Drosophila melanogaster	50	Sos	FBgn0001965	FBtr0080541	2	1	1	98	2L	13816691	13816774	TTCAGAGAAAGAACGAGCAG		59	13816835	13816853	CGTTGGGTACACTAAGGTG		59	NA	
Drosophila melanogaster	50	CG16825	FBgn0032503	FBtr0080463	2	1	1	60	2L	13307518	13307536	GACCATGTACAACTCCCAG		59	13307560	13307578	GTGAGCTACGTAACCAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5787	FBgn0032454	FBtr0080405	2	1	1	165	2L	12709471	12709489	TACCAATTCCAAGTCCACC		59	12709259	12709278	TATAGAGGGAAAGACAGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Oatp33Ea	FBgn0032433	FBtr0080384	2	1	1	80	2L	12444216	12444236	CTACATGTACTTCATCGTCAC		58	12444043	12444175	CTTAGAATTATGCCTGTCGT		57	NA	
Drosophila melanogaster	50	SC35	FBgn0040286	FBtr0089899,FBtr0089898	1	2	2	63	2L	12433615	12433633	TCTACATACCCAGGGATCG		59	12432715	12433589	TCATAGAAGCGAACAAATGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	aret	FBgn0000114	FBtr0080345,FBtr0080344,FBtr0080346	1	3	4	80	2L	12278911	12282525	CTAAATGGGATGTACCATCCC		59	12298571	12298590	CATACCCACAAAGAGTTTGC		59	NA	
Drosophila melanogaster	50	CG4705	FBgn0032339	FBtr0080196	3	1	2	121	2L	11092482	11092560	CGAGATACACGCCTATTGG		59	11092644	11092663	CACGAAGGAACAAATAGGGT		59	NA	
Drosophila melanogaster	50	CG6729	FBgn0032296	FBtr0080119	1	1	1	81	2L	10742716	10742735	GAACACTAAGGATCCAAACC		58	10742596	10742614	ATAGTTCAAGCTCTCGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CYLD	FBgn0032210	FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069	2	5	5	80	2L	10296849	10296945	TTCTAAAGCTAAGCTCGGG		59	10296787	10296808	CACTCGGTAATGTTAACTTCTC		58	NA	
Drosophila melanogaster	50	Hand	FBgn0032209	FBtr0080073	3	1	1	95	2L	10294480	10294499	AGCACTGTTTGAAATCAGAG		58	10292792	10292810	CTGGAATAAGTTCCGATGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18619	FBgn0032202	FBtr0089738,FBtr0089735,FBtr0089737,FBtr0089736	3	4	4	200	2L	10264619	10264767	TGAAAGCCAAACTAGAACG		57	10264990	10265010	GAAGTAACTGGTCATTGTTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5727	FBgn0032193	FBtr0079958	2	1	1	60	2L	10210115	10210134	TATTCCTGAATCAGATCCGT		57	10210074	10210092	TCCATCCTAAAGAACTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31755	FBgn0051755	FBtr0079972	3	1	1	158	2L	9999228	9999246	ATATCCTGGCAGAACAGGA		59	9999022	9999040	CAAGCATCAACCGATTAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5899	FBgn0032157	FBtr0100280,FBtr0079901,FBtr0100279	2	3	3	92	2L	9910429	9910503	TCGTTGTTTGCTAAGAAGG		57	9910355	9910373	CATGATACGCTTTGCTCTC		58	NA	
Drosophila melanogaster	50	d	FBgn0086896	FBtr0079680,FBtr0079678,FBtr0079679	3	3	3	120	2L	8483305	8483323	CAACTTTGACCTAAACGCA		58	8483407	8483574	GCTGTGATTCTTCGATGTC		58	NA	
Drosophila melanogaster	50	CG13397	FBgn0014417	FBtr0079711	2	1	1	60	2L	8409745	8409765	GCTAGAGGATAACAGATACGA		58	8409705	8409723	GAATTGCCTGGTTATGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17294	FBgn0032032	FBtr0079651	1	1	1	80	2L	8377726	8377747	CCAATCCTTATTTCTTCGAAGG		59	8377788	8377859	CATCATTGGCATCATCTCC		58	NA	
Drosophila melanogaster	50	Mcr	FBgn0020240	FBtr0079543	2	1	1	88	2L	8075308	8075326	ATTGAGCGTTGGTATCCAG		59	8075152	8075256	GATTCGTTGAATCGTTCCG		59	NA	
Drosophila melanogaster	50	CG13792	FBgn0031927	FBtr0079520	2	1	1	60	2L	7645546	7645564	TGTGCAACTACAAGAACTC		57	7645504	7645522	TACTTGAGACACTTGAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ninaC	FBgn0002938	FBtr0079437,FBtr0079436	3	2	2	80	2L	7380989	7381068	CAGGATTTGATTATGGATCGC		59	7381110	7381128	AGCCACGGATATTTCAGTG		59	NA	
Drosophila melanogaster	50	CG13779	FBgn0040954	FBtr0079403	2	1	1	140	2L	7064272	7064290	CGAGGAAGAGCTAAATGTG		57	7064394	7064412	GGTTAGGACTGAACAAAGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Hrb27C	FBgn0004838	FBtr0079347,FBtr0079348,FBtr0079346	3	3	3	131	2L	6924283	6924301	TATCATGTACGACCAGGAG		57	6924396	6924698	TTCTTGATTTCGACCTGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG17377	FBgn0031859	FBtr0079376	1	1	3	87	2L	6801842	6802253	TGCTGTAATGAGCTTTATGC		58	6801774	6801792	CATGGATCCTACCTCTACG		58	NA	
Drosophila melanogaster	50	CG9162	FBgn0031778	FBtr0089943	1	1	1	144	2L	6078979	6078997	AAGCCGTTCTATAGTTGGG		59	6079105	6079123	ATTTGCAATGGACATCGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9154	FBgn0031777	FBtr0079213	2	1	1	80	2L	6070276	6070296	TTTAGTATAGCACTGCTCTCC		59	6070162	6070235	GAACTCGAATATGTGCACTG		59	NA	
Drosophila melanogaster	50	H15	FBgn0016660	FBtr0079076	2	1	1	96	2L	5414202	5415364	TTTGATAGGGATCCCATGG		58	5415424	5415442	GAGTCAATTGGGACATCAG		57	NA	
Drosophila melanogaster	50	CG14033	FBgn0046776	FBtr0079065	2	1	1	119	2L	5243822	5243840	CTTCAAAGGACTTGGACAC		58	5243923	5243941	TGTTCAGCTCTGTGTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tkv	FBgn0003716	FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086	2	4	4	228	2L	5221390	5221470	TTCTCATGTGCAAGGTAGC		59	5221180	5221198	AAACATAAGCTAGCCACGA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14035	FBgn0031685	FBtr0079020	3	1	1	60	2L	5103479	5103498	ATTTACGATGACGAAGAGGA		58	5103518	5103539	GCGATTGATTCGCTATAATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4230	FBgn0031683	FBtr0079019	2	1	1	275	2L	5097219	5097547	CAAGGATGATGGCTTTGAG		58	5097844	5097862	ATCTCCTCATCCGTAAGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31919	FBgn0031674	FBtr0079007,FBtr0079006,FBtr0100270,FBtr0079008	3	4	4	116	2L	5047102	5047120	AGATGGATCCACATAGTGC		58	5047198	5047284	CGTTATAGATAGCTGCATTCC		58	NA	Nonspecific
Drosophila melanogaster	50	Jon25Biii	FBgn0031653	FBtr0079056	2	1	1	60	2L	4950669	4950687	AGGTCTTCGTAAAGGACCT		59	4950627	4950645	TATCCGTTGGTGATACGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12194	FBgn0031636	FBtr0077385	1	1	1	80	2L	4840096	4840173	TGATTCTAGGTTGGATGGA		57	4840217	4840235	TTAGTTTGGCCAATTCTCC		57	NA	
Drosophila melanogaster	50	ine	FBgn0011603	FBtr0077448,FBtr0077446,FBtr0077449	1	3	4	141	2L	4473965	4474339	AGTCTCAGGTTATCTTCCAG		58	4473843	4473861	GAAATGATAGGAACTGCCG		58	NA	
Drosophila melanogaster	50	CG15429	FBgn0031596	FBtr0077428	3	1	1	107	2L	4353566	4353584	GATACAATCACCATGCAGG		58	4353718	4353736	CAGTCAGTCCATTCTCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10019	FBgn0031568	FBtr0077487	3	1	1	90	2L	3749812	3749830	GTTATAGCTGGAGCTCTGC		59	3749883	3750013	CAATTGATAGGAACAGCTGC		59	NA	
Drosophila melanogaster	50	lectin-24A	FBgn0040104	FBtr0077539	3	1	1	60	2L	3717500	3717521	GATCAGATCCAGTTGAATATCC		58	3717461	3717481	CCTTTATGTTGGAAACGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acp24A4	FBgn0051779	FBtr0110767	2	1	1	74	2L	3693614	3693632	TTTATCTACGGCGGATGTC		59	3693558	3693579	CTCCACGCACTTATTTATACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tim	FBgn0014396	FBtr0114526,FBtr0077564,FBtr0077567,FBtr0114527,FBtr0077566	2	5	8	80	2L	3500054	3500072	CCAGAATTCCGGACTACTG		59	3499755	3500010	TGAGGTTGAGTTTGTCCAG		59	NA	
Drosophila melanogaster	50	CG18557	FBgn0031470	FBtr0077689	3	1	1	62	2L	2845572	2845590	AGAATGCTATTTCTTGGCC		57	2845528	2845546	TTTGAGAACTGTGACAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15398	FBgn0031446	FBtr0077741	1	1	1	60	2L	2695825	2695844	TGGCAACATTTATTGTCAGG		58	2695784	2695805	TATATTGGCTAGACCATATCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpp	FBgn0000490	FBtr0077774,FBtr0077772,FBtr0077775,FBtr0077771,FBtr0077773	1	5	5	60	2L	2458369	2458387	GACCACTTTAACTCGACCA		59	2458410	2458429	CGGGATTCATATTGTTGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdlc2	FBgn0026141	FBtr0077925,FBtr0077924	2	2	2	61	2L	1344751	1344770	TTCGACAAGAAGTACAACCC		59	1344794	1344812	ACATAGGATCCGAAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lsp1beta	FBgn0002563	FBtr0078025	3	1	1	60	2L	899546	899564	CTACGAGTTCAACCAGGAG		59	899587	899606	GTAGAACTTCTTCACGTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ds	FBgn0000497	FBtr0078045	1	1	1	89	2L	648358	648493	TTTACAGTATTACGGGCGG		59	648287	648305	GTTCTCTATCCAAGGGTCG		59	NA	
Drosophila melanogaster	50	CG2813	FBgn0031268	FBtr0078069	3	1	1	81	2L	575075	575149	CAACTACTTTGTCATTAGTGGC		59	575191	575209	AAGTCCTAATAGTGCGGTG		59	NA	
Drosophila melanogaster	50	lwr	FBgn0010602	FBtr0078081,FBtr0078082	2	2	2	159	2L	541831	541849	CTACACCATCTACTGCCAG		59	541690	541709	ATTCCAAACAAACGCTTACC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	MED15	FBgn0027592	FBtr0078062	1	1	1	82	2L	475105	475125	TGGAGACTCTACTTAAGTGTG		58	475169	475241	TGAGGATTTACCAAACTGC		57	NA	
Drosophila melanogaster	50	U2af38	FBgn0017457	FBtr0078133	1	1	1	60	2L	294053	294074	GTGTACATCAAATTCCGTAACG		59	294014	294032	GGTTGTTCAAATCGTTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3436	FBgn0031229	FBtr0078120,FBtr0078119	2	2	2	68	2L	156467	156485	AGAAGGACATGAGGGAGAG		59	156515	156535	CCAGAAGAAAGCAATAACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11374	FBgn0031214	FBtr0114507	1	1	1	60	2L	76963	76983	AGTATCCTATACGCCTAACAC		58	77004	77023	GGAAGTTTGTTTGAATGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fog	FBgn0000719	FBtr0077342,FBtr0100538	2	2	2	170	X	22246596	22246614	TTTATGTGGCCAGACTTGG		59	22230963	22230981	ACCATTCTCTGGACATTCC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	tilB	FBgn0014395	FBtr0077345	3	1	1	95	X	21852615	21852633	GACCCTACAATCTGAACCA		58	21852692	21852882	TATCCAGGTGTCTGTACAC		57	NA	
Drosophila melanogaster	50	CG12565	FBgn0031180	FBtr0077214,FBtr0077215	1	2	2	102	X	21313520	21313538	GATTAGGAACGGGAACTGG		59	21312769	21313456	GAAACGGTAAGATCAATGCAG		59	NA	
Drosophila melanogaster	50	tty	FBgn0015558	FBtr0077225,FBtr0077224	1	2	2	95	X	21207505	21207817	TGAGATCTACCTGGAGAGC		59	21207428	21207447	CGGGTCATGAGATAGAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572	1	5	5	80	X	20644230	20644248	CGCTAATATACAGGGTGGT		58	20643790	20644186	GACGCACTAACCTAAATCG		58	NA	
Drosophila melanogaster	50	run	FBgn0003300	FBtr0077279	1	1	1	248	X	20566413	20566840	CCAAGAAGTAAGCAAAGCT		57	20567052	20567070	ATACTCAGATGGCTGAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1695	FBgn0031116	FBtr0077308	1	1	1	91	X	20314198	20314426	CTTCAATGAAATGGCGGAG		59	20314481	20314499	TGTTCTCGATGATGGTCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12231	FBgn0031026	FBtr0074779	2	1	1	62	X	19425589	19425607	GGAGATCAGTACCGAAGAC		58	19425545	19425564	GACAGGTCGTAGATGTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAPp190	FBgn0026375	FBtr0074483,FBtr0074482,FBtr0074481	2	3	3	81	X	17542202	17542220	TCTCAATTACCGAATCGCC		59	17541816	17542158	GTACACGCAAATAAGACCAC		59	NA	
Drosophila melanogaster	50	spheroide	FBgn0030774	FBtr0074363	2	1	1	62	X	16595437	16595720	GATGGAAAGCTAATCGATGC		59	16595394	16595412	AGCATACTGGTTGGTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8931	FBgn0030717	FBtr0074134	2	1	1	82	X	15878561	15878637	CTGCTCAAATGCATAAGTATCG		59	15878680	15878698	CTGGCAATATCACTCTGCA		59	NA	
Drosophila melanogaster	50	sun	FBgn0014391	FBtr0074177	2	1	2	154	X	15743041	15743178	CCGGAATTACCTACATCCA		58	15742367	15742923	CTAAGCCCTTTCATGAGCT		59	NA	
Drosophila melanogaster	50	Tango13	FBgn0086674	FBtr0113443,FBtr0073803	2	2	2	93	X	13471613	13471632	ATTCAAATTCACCGAACTGC		59	13471688	13474096	GAGGTATTTCTCAACGCGA		59	NA	
Drosophila melanogaster	50	CG15926	FBgn0062447	FBtr0073649	1	1	1	148	X	12370017	12370191	CAATATGATCAGAGGTGGCA		59	12370370	12370388	TTGCTAGATTCTGCGAGAG		59	NA	
Drosophila melanogaster	50	CG15731	FBgn0030390	FBtr0073670	2	1	1	91	X	12350799	12350817	CAAGGTGATCCATGAGGAG		59	12350726	12350744	CGTGAATGACCTTGATGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18130	FBgn0030359	FBtr0073581	3	1	1	107	X	11886523	11886541	TTTACTCGGAATGGTGTGG		59	11886375	11886452	TATCCGATTTGCAAATGGC		58	NA	Nonspecific
Drosophila melanogaster	50	Sk1	FBgn0030300	FBtr0073497,FBtr0073498	1	2	2	60	X	11338242	11338262	ATCCTACTGAATCCGAAATCC		59	11338284	11338302	CCACCTGTTTCTGGAAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15309	FBgn0030183	FBtr0112974,FBtr0071487	2	2	2	60	X	10101546	10101565	CATACTCATGTGTTCACTGC		58	10101505	10101523	GACTTCGATATGAGCTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sp1	FBgn0020378	FBtr0112894,FBtr0071380	2	2	3	96	X	9647339	9647592	TAACATCACAGCTAGTCGC		59	9647652	9647670	GGATGACTGTGATCCAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10962	FBgn0030073	FBtr0071263	3	1	2	74	X	8867826	8867845	TGATCTTTGTGAATAGCACG		58	8867771	8867789	TGTACGCATTTAGGCTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12155	FBgn0029957	FBtr0071071	3	1	1	129	X	7623284	7623302	ATCCTTACGCTGATCAACC		59	7623394	7623700	ACTTGTTTCCTATCTGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34434	FBgn0085463	FBtr0112735	2	1	1	169	X	5509828	5509972	CAAGAACACAAACGTCGAG		59	5509677	5509695	CAACTGCATTCCAATCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3252	FBgn0029762	FBtr0070797	2	1	1	133	X	5301451	5301469	TGTGGACAATCTGCTTACG		59	5301084	5301356	CCTTGATCACTACATTCAGGA		59	NA	
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070740	1	1	4	64	X	4959929	4960106	CAAACAATAGTCTCGACGC		58	4960134	4960152	CTCGTCGTACTCAATGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12535	FBgn0029657	FBtr0070534,FBtr0070535	1	2	2	153	X	3287188	3287206	AAGTTTGGTCATGTCCCTG		59	3286920	3287071	GAGATCGTTACGATTCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14780	FBgn0025383	FBtr0070257	1	1	1	204	X	1366694	1366712	CATCATCAATGGAAGCGTG		59	1366939	1366957	CAGAACCACTACGAATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SNF1A	FBgn0023169	FBtr0070216,FBtr0070218	2	2	3	80	X	1270212	1270739	TTGTACCAGGTCATATCGAC		58	1270781	1270800	AATATAGTCGAACAGCTCCC		58	NA	
Drosophila melanogaster	50	DAAM	FBgn0025641	FBtr0070241,FBtr0070240,FBtr0070239	1	3	3	81	X	1187405	1187423	TCTCATGCTCGGTATACAG		58	1187282	1187360	AAAGAAGTCCAAATGCCTG		58	NA	
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	1	8	8	60	X	551391	551410	CATTATCTCATGGGATGCAG		58	551433	551451	TATCAGCTCAAACAGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL36	FBgn0002579	FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156	3	4	4	114	X	522710	522792	TTGAAGAACATCCAAACCC		57	522614	522632	TATCCTTGGACACCTTCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG41564	FBgn0085695	FBtr0114144	2	1	1	68	U	5735789	5735807	CAATCTGCGAAGTCAAAGC		59	5735839	5735857	CTCTGAGCAAAGTTTCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40092	FBgn0058092	FBtr0113790	1	1	1	74	U	235262	235280	AAATCTGCTCTATCTCGGT		57	235206	235224	AATTTGTTTCGCGGTTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32850	FBgn0052850	FBtr0089123	3	1	1	90	4	337127	340084	GTGTATCATCAGGGAGAGC		59	340135	340156	GTTGACGATTGTTAGAAGATGG		59	NA	
Drosophila melanogaster	50	CR31339	FBgn0051339	FBtr0083867	2	1	1	61	3R	16020083	16020104	GGTCTTAGGATTATCAATGTGG		58	16020125	16020144	CATATCAATGAGCTTGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34046	FBgn0054046	FBtr0100101	3	1	1	109	3R	27535099	27535189	GCTTATGGAGTTACAAGTCAC		58	27535259	27535278	AGTGCAATTGAAACACTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gprk2	FBgn0004834	FBtr0085788	2	1	1	155	3R	27279103	27279121	ATGCATCAACCTGAAAGAC		58	27279299	27279381	ATCTCGTATTTGACCACCT		57	NA	
Drosophila melanogaster	50	janA	FBgn0001280	FBtr0085595,FBtr0085597,FBtr0085596	3	3	3	86	3R	25864787	25864805	GAAGGTCTACGGATACTCG		58	25864613	25864631	GTGTAGTCCGGGTATTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7601	FBgn0027583	FBtr0085544	3	1	1	81	3R	25561672	25561746	TGACCAAAGCTCTACTTCC		58	25561609	25561627	GCAAACTTTCCCTGAACAG		59	NA	
Drosophila melanogaster	50	CG7593	FBgn0039687	FBtr0085461	2	1	1	171	3R	25550156	25550231	TGTGTCCTGTATTGTTACGA		58	25550004	25550022	CCAGTTGCTTGAAGAAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1647	FBgn0039602	FBtr0085326	3	1	1	185	3R	24646211	24646229	AGAAGATCTACGAGCTGGT		59	24646431	24646519	GATCAATTAATCTTGCGGGC		59	NA	
Drosophila melanogaster	50	Or98b	FBgn0039582	FBtr0085288	3	1	1	148	3R	24178378	24178396	GGATCAGTTCATCAGTGCT		59	24178508	24178578	TCCCAGGGATATACACTGG		59	NA	
Drosophila melanogaster	50	scrib	FBgn0026178	FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085020,FBtr0100181,FBtr0085019	1	7	7	122	3R	22392941	22393020	ATGAGTTTGAATCCGATCG		57	22393215	22393233	GGACACGCTTATTCTTCAG		58	NA	
Drosophila melanogaster	50	CG6142	FBgn0039415	FBtr0084987	2	1	1	159	3R	21962101	21962119	CAAGGAGACCTTTGGTCTG		59	21962241	21962314	AATCATTTCGATTCCCTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4685	FBgn0039349	FBtr0100571,FBtr0084891,FBtr0100570,FBtr0100569	1	4	4	192	3R	21452227	21452245	GATTCCAGCAATGCAAAGG		59	21451877	21452071	GTTTGTGCCACTTCTTGAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG31436	FBgn0051436	FBtr0084830	3	1	1	94	3R	21130983	21131003	GGATGTTCTAAAGAAGATCGG		58	21131056	21131138	GAAAGAACTCGTAGTACTTGTG		58	NA	
Drosophila melanogaster	50	CG34150	FBgn0083986	FBtr0111021	2	1	1	60	3R	20640338	20640446	AAAGAGGATGGTACAACGC		59	20640469	20640488	TTTCGATAATTGCGTCAGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5715	FBgn0039180	FBtr0084634	2	1	1	62	3R	20119351	20119369	TCAACTTCGAGAAGTCCAG		58	20119307	20119325	TGCCATAGTCGTATTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18428	FBgn0039149	FBtr0084543	2	1	1	61	3R	19935255	19935273	AATACAGCCTGAAAGGGTC		59	19935298	19935383	TCAGTGCTATTGGTATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10300	FBgn0039107	FBtr0084445	3	1	1	155	3R	19538174	19538261	AAACTGCCTTTCAAGTTCG		58	19538380	19538398	ATAATCCTTGCTGTCCAGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG6738	FBgn0039053	FBtr0084353	3	1	1	91	3R	18925918	18925990	AGCGTATACGATGGATTCTC		59	18926044	18926062	GTTCAACTTAACTCCGGCT		59	NA	
Drosophila melanogaster	50	CG34375	FBgn0085404	FBtr0112607	3	1	1	95	3R	18832381	18832400	GGCATTAATCAACAATCGCT		59	18828724	18832323	TGGTTTGATGACCTCAAGG		59	NA	Nonspecific
Drosophila melanogaster	50	Gclm	FBgn0046114	FBtr0084336	1	1	1	87	3R	18511805	18511823	ATCGGTGCCAAGATATTCC		59	18511736	18511754	GCGTCACACTAAGTATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34131	FBgn0083967	FBtr0110878	1	1	1	184	3R	18189675	18189693	ATTGAGTCCTGTGATCTGC		59	18189839	18189928	AGGCTCTTAATCTGATAGCTG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG34377	FBgn0085406	FBtr0112610	1	1	1	129	3R	18137790	18137872	ACCATACAGAGACTAAAGACAC		59	18137682	18137700	AGTTATTGAGCGGCATCTC		59	NA	
Drosophila melanogaster	50	how	FBgn0017397	FBtr0084177	3	1	3	119	3R	17897748	17900174	TATGCTGATCATAGCGTAGG		58	17900256	17900274	TATCTCAATGAAACCCGCC		59	NA	
Drosophila melanogaster	50	CG31178	FBgn0064912	FBtr0084138	1	1	1	60	3R	17699966	17700050	GTGATGCGAATAGCAATGC		59	17700073	17700092	GATTGATAGTGGATAACGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5892	FBgn0038873	FBtr0084052	1	1	1	110	3R	17070123	17070209	AATTACTCTTTGATCAGCGG		57	17070282	17070300	GAACAGGAAACCAACTAGC		58	NA	
Drosophila melanogaster	50	CG17272	FBgn0038830	FBtr0083992	2	1	1	105	3R	16649666	16649687	GCTCGTTACTTTAAAGAACAGG		59	16649452	16649536	GCATAATAACGGTTAGTTCGTC		59	NA	
Drosophila melanogaster	50	CG17271	FBgn0038829	FBtr0110823	1	1	2	92	3R	16646431	16646449	ACTTCAAGATGCACGACTC		59	16645202	16646375	CTCCACTATCCTTGACGTG		59	NA	
Drosophila melanogaster	50	CG5466	FBgn0038815	FBtr0083913	3	1	1	63	3R	16445306	16445324	CTCGTTGGACCAGATTACC		59	16445349	16445602	TATTGAGTCCAGATTGGAACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10887	FBgn0038773	FBtr0083864	2	1	1	125	3R	15940784	15940858	TGCATTCAATAGGAGGAGC		59	15940945	15940965	GGAACACTATTTGCTGTTGAG		59	NA	
Drosophila melanogaster	50	CG4459	FBgn0038753	FBtr0083849	1	1	1	101	3R	15752697	15752771	CGAAACTGAACGGAATTCAC		59	15752615	15752633	GTACAGGTGGTTAGCACTG		59	NA	
Drosophila melanogaster	50	CG17836	FBgn0038661	FBtr0083701,FBtr0083700	1	2	5	94	3R	14747034	14750813	CATTGATGAATACCTGCAAGAC		59	14750866	14750886	AGTCAAGAATATCCGTCTCAG		59	NA	
Drosophila melanogaster	50	CG31235	FBgn0051235	FBtr0083588	2	1	1	96	3R	14143406	14143424	TCATGAAGAATGCCTACGA		58	14143196	14143347	TCGCAATCATTGAAGTACTC		57	NA	
Drosophila melanogaster	50	CG7175	FBgn0038584	FBtr0083609	2	1	1	75	3R	14047590	14047667	GCTTTATCCCATCAAACGT		58	14047533	14047551	CAACTGCAGATCTTCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7208	FBgn0038575	FBtr0083618,FBtr0083617	2	2	2	221	3R	14010297	14010380	GAATACGAAGCAACCAAGAG		58	14010095	14010113	TCTTGCGACAATTCTTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17801	FBgn0038550	FBtr0083525	3	1	1	60	3R	13631825	13631844	CACAAGTACAGCTAAGTCGA		59	13631714	13631732	TTGGTACCTCAGATCTCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	spn-E	FBgn0003483	FBtr0083183	1	1	1	82	3R	11667899	11667917	CAAAGCCTTTAAACGTCGA		58	11667962	11668048	GTTGACGATGCAAGTAATCG		59	NA	
Drosophila melanogaster	50	CG5623	FBgn0038357	FBtr0083197	2	1	1	70	3R	11592522	11592540	TGATCTTTGGCAAGGAGAC		59	11592470	11592488	GTAGACACCTGTGATGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	poly	FBgn0086371	FBtr0082772	3	1	1	60	3R	9188263	9188282	AAATGGCTAACGAATACCGA		59	9188222	9188241	CGCGAATATCCTCTACTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14387	FBgn0038089	FBtr0082683	1	1	1	185	3R	8718064	8718085	GGAATTTGTCAACTACATGACC		59	8718286	8718357	AAATCGACCATGTCCAGTC		59	NA	
Drosophila melanogaster	50	pps	FBgn0082831	FBtr0082586	1	1	1	109	3R	8243599	8243617	TCTTTGCTGAACAACTCCT		59	8243689	8243773	AACACATTAATCCGTTCCAC		58	NA	
Drosophila melanogaster	50	CG12201	FBgn0037970	FBtr0082486,FBtr0082485	1	2	2	97	3R	7797715	7797733	AATAGGTCCCAATGGAGAG		58	7797865	7797883	CTGAGCCTCTGTACATTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12213	FBgn0037968	FBtr0113223,FBtr0082510	1	2	3	67	3R	7791201	7791277	AGATCAAGATGAGGACGAC		58	7791152	7791170	GTCTAATAACCTCGCCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31116	FBgn0051116	FBtr0082527,FBtr0082528,FBtr0113390,FBtr0082526,FBtr0113391	3	5	5	85	3R	7627002	7627681	AAGTATAGGTTCTGGTATACCC		58	7626938	7626959	CCACTAGTGTCTTAAATGTGAG		58	NA	
Drosophila melanogaster	50	CG6783	FBgn0037913	FBtr0100321,FBtr0100320	3	2	3	262	3R	7390345	7390363	TACCTACACCCTGACTACC		59	7390033	7390051	GATCAGTCTCTTAGACGGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG33784	FBgn0053784	FBtr0091785	3	1	1	217	3R	5893842	5893918	TACGACTTGCGTACTAACC		59	5894156	5894175	TCATGTCATCATTCAGAACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG12811	FBgn0037779	FBtr0082204	2	1	1	87	3R	5873610	5873628	AGCACCAGCTTCTTTATCC		59	5873470	5873488	GTCTCCGGGTAATACAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11984	FBgn0037655	FBtr0082008,FBtr0082009,FBtr0082007	2	3	3	101	3R	4838553	4838574	GCTGATTTCCTTTCTGATATCC		58	4838074	4838491	TAACTAGCAAGAACAAGCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15864	FBgn0040528	FBtr0081803	2	1	1	200	3R	4073688	4073708	TGGAGAATAACAATCCTGAGC		59	4074464	4074654	CAATGTGCCTCTTCATTTCC		59	NA	
Drosophila melanogaster	50	alpha-Est3	FBgn0015571	FBtr0081545	1	1	1	101	3R	3365220	3365299	AAAGCGTACTGTGAGTACG		59	3365137	3365156	ATAGAGGTATGTGGAAGCAC		58	NA	
Drosophila melanogaster	50	CG1091	FBgn0037470	FBtr0081640,FBtr0081641	1	2	2	82	3R	2909960	2909978	CGACATTTGTCTGAACAGC		59	2909838	2909916	TATATTGAGTCAGTGGCTGTG		59	NA	
Drosophila melanogaster	50	Dfd	FBgn0000439	FBtr0081621	2	1	1	121	3R	2627070	2627354	TGATGAATGAGTGCATTCG		58	2627439	2627457	CTGAGATCCCGGATAAGAG		58	NA	
Drosophila melanogaster	50	Ccp84Ae	FBgn0004779	FBtr0081694	3	1	1	148	3R	2517279	2517415	AGATTGTTATCGCTTTGGC		58	2517149	2517167	GTAGGTGTACTGAGGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED27	FBgn0037359	FBtr0078712	2	1	1	80	3R	1481358	1481376	TCCTACAATTACTGCTCGC		59	1481418	1481498	GAGCTTATCTATGTGGTCTGG		59	NA	
Drosophila melanogaster	50	tacc	FBgn0026620	FBtr0089955,FBtr0089951,FBtr0089953,FBtr0089949,FBtr0089952,FBtr0089954,FBtr0089950	1	7	7	125	3R	563223	563241	ATACAGCCAAGAAATGGGA		58	562961	563040	CCTCCGTATTAGTGTTGGA		58	NA	
Drosophila melanogaster	50	CG41452	FBgn0084015	FBtr0111175	1	1	1	83	3L	23019737	23019755	GTCCCATCCCATATACTCG		58	23020537	23020555	CAAACGGTGTACACTTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ssl1	FBgn0037202	FBtr0078554	3	1	1	208	3L	22872834	22872852	CAATTAGGACTCATAGCGC		58	22873075	22873094	CCCATGATAATGACGATCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	AP-2	FBgn0023417	FBtr0078419,FBtr0078418	3	2	2	223	3L	21602979	21604253	GACATGTCACCCAATTGTC		58	21604439	21605102	TTTCATGCTCTTTATGAGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234	3	10	10	74	3L	20826941	20826959	CTCAAATGCGTCAAACTGG		59	20827129	20827147	GTTGCGTTTGAGTATGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	nes	FBgn0026630	FBtr0075021,FBtr0075020,FBtr0075019	1	3	3	75	3L	19251447	19251638	AATAACCCGCTTCTACACC		59	19251390	19251408	CAGCTTGTAGATGTCCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4998	FBgn0036612	FBtr0110866,FBtr0075377	1	2	2	138	3L	16337056	16337074	GATGGAGACAGTGAGTTCG		59	16337174	16337259	GAGATTTAATGCAATGGGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13473	FBgn0036442	FBtr0075689	1	1	1	60	3L	14722119	14722138	GTTGGTCCTTAAGATTGACG		58	14722161	14722179	GTTGACTTCGTACTGAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ImpL1	FBgn0001256	FBtr0075843	3	1	2	60	3L	13375934	13375952	AGGTAAGTCTCGCATATCG		58	13375974	13375994	CGCATACCAGTTAATTATGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12520	FBgn0036324	FBtr0113169	3	1	1	68	3L	12895127	12895230	GAAATTCGTGCTAGAGACGA		59	12895078	12895096	CTGCAATTCTTCGAGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pcaf	FBgn0020388	FBtr0075969	3	1	1	147	3L	12514969	12515051	GCAGTTCATAGCTGTAATTCG		59	12514842	12514860	CAGACCAGGAATCGATTCC		59	NA	
Drosophila melanogaster	50	CG10654	FBgn0036294	FBtr0075971	1	1	1	66	3L	12499567	12500328	TGAGGAAGTCTACGTAATAGAG		58	12499522	12499540	AATGGATAGCTTCTCCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7543	FBgn0036164	FBtr0076092	2	1	1	120	3L	11478026	11478044	GTGCAACGCATTAGAAGAG		59	11478128	11478283	GGCAATCCTTTCATCTAGC		58	NA	
Drosophila melanogaster	50	ATPsyn-b	FBgn0019644	FBtr0076405	3	1	2	118	3L	9723624	9723642	GAGATCTACGTCATGGAGC		59	9723724	9723834	TTATCGATCTCGCCATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3306	FBgn0036016	FBtr0076380	3	1	1	60	3L	9595293	9595312	CACAAACAGAAGTTATTGGC		57	9595335	9595353	CATTCTCCTGATTGTTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nwk	FBgn0035966	FBtr0076532	2	1	1	98	3L	9132625	9132643	TCAGAATCGCTACTTCACC		59	9132705	9133008	CGTCCCATTAACATCAGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780	2	8	8	127	3L	7811267	7811287	CAGATGACAAATACAAGGAGG		58	7810754	7811178	GTCGGCATATTGTGTTACC		58	NA	
Drosophila melanogaster	50	Clk	FBgn0023076	FBtr0100132,FBtr0100134,FBtr0076785	1	3	3	89	3L	7760034	7760053	TCTACACTCATTTGAGACGC		59	7759911	7759983	TATCGTTACGAAAGTAGCCC		59	NA	
Drosophila melanogaster	50	Sh3beta	FBgn0035772	FBtr0076872	3	1	2	119	3L	7361074	7361997	ATAAGGAGGTGAAGAAGCG		59	7360973	7360991	TTTGCATCAGCTCCTTCTC		59	NA	Nonspecific
Drosophila melanogaster	50	Gr64b	FBgn0045478	FBtr0073195	3	1	1	84	3L	4029937	4030007	TTGGTCCATAGAGGTTCAG		58	4030055	4030073	GGTGAGGTAGAAGAATCCG		59	NA	
Drosophila melanogaster	50	CG10866	FBgn0035475	FBtr0073173	1	1	1	60	3L	3937385	3937462	TTATTTGGAGGATGCCACC		59	3937343	3937361	TATAATGCTGGAGCAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32267	FBgn0052267	FBtr0073142	1	1	1	60	3L	3471948	3471966	TTCATCCTATTTGGAGCCG		59	3471836	3471854	AATGCTTCAGGACTATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11537	FBgn0035400	FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117	1	5	5	80	3L	3130292	3130310	GGTCTCGGTCTTTATAGCC		59	3130170	3130248	CCAAACACTTGCATGAAGG		59	NA	
Drosophila melanogaster	50	prominin-like	FBgn0026189	FBtr0073120,FBtr0073119,FBtr0073118	2	3	3	89	3L	3118970	3119051	CCTGCTTCTAGCCATACTG		59	3118899	3118917	TAGGTTACCATACCCAGCA		59	NA	
Drosophila melanogaster	50	CG32485	FBgn0052485	FBtr0072985	2	1	1	107	3L	3050600	3050618	TGAAATTGATTGTGGAGGC		58	3050689	3051014	TTAGAATGGCCTGAAATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32487	FBgn0052487	FBtr0073007	3	1	1	92	3L	3016506	3016524	AACCCAATCCGTACATGTG		59	3016365	3016450	TATCTGTGCACATGGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	msn	FBgn0010909	FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956	1	5	5	102	3L	2556720	2556800	GCAATAGAGATACGTTCCG		57	2556636	2556654	ATACTTTGTCGTTTCGCTC		58	NA	
Drosophila melanogaster	50	CG17249	FBgn0035249	FBtr0072810	3	1	1	60	3L	1646568	1646589	CCAAACCTATAAGTAAACCCAC		58	1646529	1646549	TCGTCATCATCTTCACTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32319	FBgn0052319	FBtr0072714	1	1	1	60	3L	1471759	1471777	CCGTACTCCATTTACACCT		58	1471717	1471735	CGAAGAAGCATAGATCTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2213	FBgn0035210	FBtr0072724	1	1	1	60	3L	1332405	1332423	CTGGAGATGTTCGTAGAGG		58	1332363	1332381	CCATATTGTAGCTGCTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Roc1b	FBgn0040291	FBtr0072547	1	1	1	60	3L	358036	358054	CGAGGAGATAGAGGTTGAG		58	358078	358096	CTCTTCGTCATTGAAGTCC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32344	FBgn0052344	FBtr0072576	3	1	1	102	3L	324119	324137	CATACATACCTGTCCGGAC		59	323981	324054	AAACACCACGTACTCTATGG		59	NA	
Drosophila melanogaster	50	snoRNA:Or-CD2	FBgn0086603	FBtr0091613	1	1	1	60	2R	4984571	4984590	CATATAAAGGTCAAGCGCTG		59	4984613	4984631	ACAAGACGCTCTATCTCCA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	yip3	FBgn0040063	FBtr0072050,FBtr0072051	1	2	2	62	2R	19132122	19132191	ATAGATGACCGCATTTACTG		57	19132079	19132097	TTCCAGAACTATGTTCCGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG32835	FBgn0052835	FBtr0071992	2	1	1	208	2R	18841030	18841048	GAAATCTTGACGGTAGCGA		59	18839410	18839428	TTAATCAAGAGATGCAGCG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	inaD	FBgn0001263	FBtr0071909	2	1	1	90	2R	18745187	18745205	GAAGCATAGTAACTACGCC		57	18745061	18745133	TCGATCGATCTCATAACCC		58	NA	
Drosophila melanogaster	50	CG17807	FBgn0034748	FBtr0071938	2	1	1	60	2R	18521882	18521901	ATAAGGCAGTGAACAAGGAG		59	18521841	18521859	TCCTGATGTTGCTTCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL29	FBgn0016726	FBtr0071593,FBtr0071594,FBtr0071592	1	3	3	136	2R	17181657	17181744	CACTCTGGGTATGGATGTG		59	17181844	17181862	ACAGAGTAACAGGCTTTGG		59	NA	
Drosophila melanogaster	50	CG9993	FBgn0034553	FBtr0071560	2	1	1	73	2R	16738698	16738774	AATCCCTCAGCTCTTTACC		58	16738643	16738661	TGAAGATACAGCTGATCCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG10444	FBgn0034494	FBtr0086305	1	1	1	77	2R	16160695	16160772	GGAGACTATGGGTCAATATCC		59	16160638	16160656	GAAATCGTGGAAAGACTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Topors	FBgn0034410	FBtr0086570	2	1	1	105	2R	14861660	14861681	CGTTATGTGTACGATAGAAAGC		59	14861746	14861832	TCTGAGCAGGATTGTTTCTG		59	NA	
Drosophila melanogaster	50	DptB	FBgn0034407	FBtr0086621	3	1	1	110	2R	14754947	14754965	TCTATTCATTGGACTGGCT		57	14755039	14755113	AAATTGGGAGCATATGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33998	FBgn0053998	FBtr0100053	1	1	1	60	2R	14626121	14626141	TACACAGGGAAATCATTACGG		59	14626163	14626181	ACAAATTCTCTGGTCACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Menl-1	FBgn0029154	FBtr0100116,FBtr0100115,FBtr0100114	1	3	3	92	2R	12305201	12305279	ATTCTCAGATGGAAAGGCT		58	12305127	12305145	TTGTTAGCTTGACCAGGAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG10734	FBgn0034082	FBtr0087250	3	1	1	60	2R	12045152	12045171	AAGAAGGAGACATTGGAAGC		59	12045111	12045132	TAGTAGTACTGACTTTCTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10731	FBgn0034081	FBtr0100497	3	1	1	63	2R	12034593	12034675	GCACTTATCCACCTTTCCA		59	12034548	12034566	CTTGTTCTCCTTGGTTTGC		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG8366	FBgn0034054	FBtr0087201	2	1	1	181	2R	11842979	11842997	CAGATGATCATGGACGGTC		59	11843199	11843217	ATTCGAGTAGCAGTTGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Poxn	FBgn0003130	FBtr0087311	2	1	1	96	2R	11717713	11717732	TAACTCGCTTCTATGAGACG		58	11715544	11715562	ATGATCTTCTTCACCACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10257	FBgn0033985	FBtr0087408	2	1	1	135	2R	10830582	10830710	CATCAATGGCAAGATGTACC		58	10831314	10831332	GATGTGAAAGGTGTCTTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12862	FBgn0033950	FBtr0087484	1	1	2	60	2R	10527943	10528051	CAACTTAGACCAGATAGCGG		59	10527902	10527920	ATAAATCTCCCGGTACCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SelD	FBgn0020615	FBtr0087564,FBtr0087565	1	2	2	60	2R	10157195	10157215	TACCAAGATGACAGAGAAGGA		59	10157155	10157175	CTTAAAGCCTCGCATTATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13353	FBgn0033896	FBtr0087600	3	1	1	161	2R	9978283	9978594	AGGTGTTCATCATAGTGCG		59	9978717	9978737	CGATGGTGATGTAAATGAACC		59	NA	
Drosophila melanogaster	50	stj	FBgn0033870	FBtr0087631	2	1	1	80	2R	9697165	9697427	ACTGATTCAAGCCAATCTG		57	9697471	9697489	TAATTGGCGATCGATTTGG		58	NA	
Drosophila melanogaster	50	CG13334	FBgn0033856	FBtr0087677	1	1	1	60	2R	9446559	9446578	TTATCATCTCAAATCCCGCC		59	9446600	9446619	GGTAGATTGGTTATTCGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vg	FBgn0003975	FBtr0087785	1	1	1	80	2R	8774680	8774700	GGTGCCTACTATCCATATCTG		59	8774742	8778986	CAAATCCTGGTTGAACCTC		58	NA	
Drosophila melanogaster	50	CG34021	FBgn0054021	FBtr0100076	3	1	1	61	2R	8224849	8224868	AAGCAACTTAAGTGGTTGGA		59	8224892	8224910	CATCCTTCGTCAGGATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8986	FBgn0033658	FBtr0088062	1	1	1	90	2R	7750397	7750415	GATCATCTTCATCAAGGCG		58	7750325	7750343	ATACACAAGGGTCTTGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30035	FBgn0050035	FBtr0088074,FBtr0088073	2	2	2	101	2R	7561243	7561261	ATTGATGGCAATCTCTGCA		59	7561325	7561403	TAGAAGAATCTTTCTGCCCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Or45a	FBgn0033404	FBtr0088503	1	1	1	90	2R	5233929	5233947	CAAATGGTGATCATGAGGG		58	5234001	5234073	TTCTGATGACCCAAAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rad201	FBgn0003194	FBtr0088619	3	1	1	112	2R	5054505	5054523	TTACCGGATCAATCAGTGC		59	5054411	5054429	GACTTCATAACCCGTTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18659	FBgn0027561	FBtr0088626	2	1	2	197	2R	5015061	5015079	GATCTACAGATCTTTGCGC		58	5013563	5013695	CTCCTTAACCGATTTGACG		58	NA	
Drosophila melanogaster	50	CG8709	FBgn0033269	FBtr0113055,FBtr0088815	1	2	2	128	2R	4027872	4028032	TCAACTATCCAGACGTGTG		59	4027762	4027781	TCTGGAAGGTGATCATTGTC		59	NA	
Drosophila melanogaster	50	Hey	FBgn0027788	FBtr0088869	2	1	1	279	2R	3884918	3885349	CTCCAAGGAACAAATCTCG		58	3883916	3883934	GATATGGTAGTCCATGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2906	FBgn0033240	FBtr0113051,FBtr0113052	3	2	2	81	2R	3844274	3844293	ATCTGAAGAACCTGCAAGAG		59	3844336	3844416	CAAGGAAGGGAGTTATCAGG		59	NA	
Drosophila melanogaster	50	Dgk	FBgn0085390	FBtr0112581,FBtr0112579,FBtr0112578,FBtr0112580	1	4	4	90	2R	3724813	3724831	AGAGTAAGAAACTACGCGC		59	3724658	3724759	TCTCCAAAGTCCTGAATGG		58	NA	Nonspecific
Drosophila melanogaster	50	Gapdh1	FBgn0001091	FBtr0100479,FBtr0088903	3	2	2	62	2R	3679690	3679708	GCTAATCTCGTGGTACGAC		59	3679646	3679665	TACTTGATCAGGTCGATGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18812	FBgn0042135	FBtr0088936,FBtr0088935	1	2	3	185	2R	3607493	3613203	ATCAGGAAAGATACGAGCG		59	3607264	3607285	GCTTAATCAGATATAGCAAGGC		59	NA	
Drosophila melanogaster	50	CG8335	FBgn0033069	FBtr0085990	2	1	1	86	2R	2088447	2088467	GAGCTAAGGTGTATCTAAAGC		57	2088514	2088589	CCATAACCTGATTGTCACCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30440	FBgn0050440	FBtr0086076	3	1	1	91	2R	1362228	1362246	CTGTTCAGGATCAACACGA		59	1355934	1362174	CTTCTGCATTAGTATCGGGT		59	NA	
Drosophila melanogaster	50	CG17486	FBgn0032997	FBtr0111293	2	1	1	60	2R	506829	506849	TATATGTCTGACACGACTTGG		59	506871	506889	TCTGTTCTTTACAACGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41449	FBgn0084013	FBtr0111267	2	1	1	64	2R	119323	119341	CGCTAAAGAAGGGAGACAG		59	119277	119295	ATTCTCGCAACTGATTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40465	FBgn0058465	FBtr0100850	2	1	1	60	2L	20253962	20253982	ATATAGAATGGGTCCAGTCTG		58	20253922	20253941	TACCACAGGTACTCTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9331	FBgn0032889	FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081418,FBtr0081419	3	5	5	242	2L	20826856	20826874	AGTGACTTCGTAGTGATCG		58	20827141	20827498	AACAACATTGTCAAGCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18858	FBgn0042175	FBtr0081364	2	1	1	60	2L	20457492	20457510	AACTGCACTGTCTCTATGG		58	20457385	20457470	GATTTCTTGTACTGCAGTCTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG10262	FBgn0032813	FBtr0081262	3	1	1	86	2L	19583489	19583507	CGGAGAAGATTACGCTCAG		59	19583421	19583439	GATCCTGGTCCAGATTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10750	FBgn0032769	FBtr0081196	2	1	1	87	2L	19301274	19301292	TCTACAACCTGGACAAGGA		59	19301343	19301415	TAGCTGGGAACAATGTCTC		58	NA	
Drosophila melanogaster	50	tup	FBgn0003896	FBtr0081111,FBtr0081112	1	2	2	103	2L	18862252	18862270	GTATTAGGGACAAGCGACC		59	18862106	18862185	ATTGTAGCAGGTTCTGAGC		59	NA	
Drosophila melanogaster	50	CG6860	FBgn0032633	FBtr0080969,FBtr0080968	2	2	2	83	2L	17372762	17372782	GTTATACTGTGTCATTTGGCC		59	17372634	17372717	CAACTTATTGACACCGGGA		59	NA	
Drosophila melanogaster	50	CG12448	FBgn0028857	FBtr0080796,FBtr0080795	1	2	2	60	2L	15942019	15942038	AAGGAACATATGCTACCAGG		59	15942059	15942141	CGATCTTACTTAGCAGATCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15639	FBgn0032502	FBtr0080477	1	1	1	213	2L	13305818	13306074	GAAATCCATAAGATCGATGCG		59	13305560	13305579	CCATCATGGGATAGATAGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17010	FBgn0032424	FBtr0080355,FBtr0080354	1	2	2	60	2L	12357605	12357624	CTTCAATGGTAGTCCCTACG		59	12357647	12357665	GGTTCTTCCACAACTTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14945	FBgn0032402	FBtr0080295,FBtr0080294	3	2	2	186	2L	12051366	12051455	ATGACTTCGATGTGTCTCG		59	12051605	12051623	TCCGCCGATACTATATTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	esc	FBgn0000588	FBtr0080325	2	1	1	197	2L	11828900	11828980	TACAAATACGACACCCACG		59	11828357	11828740	AAATACTTCATCGGGATCCG		59	NA	
Drosophila melanogaster	50	Mst33A	FBgn0028412	FBtr0080271,FBtr0080272	3	2	2	60	2L	11586124	11586144	GATCAAGTGCATAATCGTGAC		59	11586084	11586102	TTGGATATACCGGATGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18666	FBgn0040967	FBtr0080160	3	1	1	60	2L	11034892	11034910	ATGATGATTCCAGTGACGA		58	11034933	11034952	GGATCGGAATACTGATCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17140	FBgn0032306	FBtr0100838,FBtr0100837	2	2	2	60	2L	10843766	10843784	GTCGATTGTATGGACTGCT		59	10843656	10843742	GTTTGAAAGCTCACTTCGT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5355	FBgn0032242	FBtr0080047	1	1	1	84	2L	10412253	10412271	AGGTGCGGAAATAACTTCC		59	10412125	10412208	GCCTTCATTGGTAATGTAATCG		59	NA	
Drosophila melanogaster	50	CG32987	FBgn0052987	FBtr0079735	1	1	1	60	2L	8864068	8864087	ATATGCATGCATTGTATCCC		58	8864109	8864128	CTGTCATGAACCACTTACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LanB1	FBgn0002527	FBtr0079491,FBtr0079490	2	2	2	244	2L	7817646	7817740	TAGATTGTCAGGACTCGAC		58	7817948	7817966	ATTGCCAAAGAAGTTGTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	milt	FBgn0022201	FBtr0079397,FBtr0079399,FBtr0079398	2	3	3	180	2L	7051637	7051769	CAGATACTGACACTCCCAC		59	7051911	7051931	TTTAGCTGAGCACTGATATCG		59	NA	
Drosophila melanogaster	50	Coprox	FBgn0021944	FBtr0079352	2	1	1	130	2L	6965536	6965555	ACCAAGTTCGGTCTATACAC		59	6965648	6965666	AGGACCTTCATCAGTTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	H15	FBgn0016660	FBtr0079076	3	1	1	99	2L	5414199	5415361	GACTTTGATAGGGATCCCA		58	5415424	5415442	GAGTCAATTGGGACATCAG		57	NA	
Drosophila melanogaster	50	CG14035	FBgn0031685	FBtr0079020	2	1	1	60	2L	5103477	5103497	TGATTTACGATGACGAAGAGG		59	5103516	5103537	GATTGATTCGCTATAATCTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31918	FBgn0031678	FBtr0079028	3	1	1	60	2L	5057722	5057740	AAGTTTCAGTGGATGGAGG		59	5057680	5057698	ACATGATGTCATTGAAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15625	FBgn0031644	FBtr0077390	2	1	1	99	2L	4890351	4890433	GATATCCACAGTACATGAACAC		58	4890493	4890511	TTCTTGATGTTCATCGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15630	FBgn0031627	FBtr0077418	3	1	1	62	2L	4735767	4735866	ATTATGCTTTCGAGGAGGG		59	4735723	4735741	GGTAAACGGTATCTGGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31694	FBgn0051694	FBtr0077685	1	1	1	97	2L	2871046	2871065	CTAACACTTATACCTTCGGG		57	2870897	2870915	GTAGATTGCAAGAGACCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	eys	FBgn0031414	FBtr0114370	1	1	1	81	2L	2353453	2353547	CAACCTTTACTTGCATCTGC		59	2353591	2353609	TTGTTGAAGGAGTCACAGG		59	NA	
Drosophila melanogaster	50	CG34172	FBgn0085201	FBtr0112363	3	1	1	125	2L	2192831	2192977	GAGCAGTTACATAAGAGACCT		58	2192664	2192682	AAATCTTATCCGCAGGTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Su(dx)	FBgn0003557	FBtr0077824,FBtr0077823,FBtr0077822	2	3	3	82	2L	2040347	2040428	GTTCACAGTGCTGATTACAC		59	2040473	2040491	CAAGCATGGCATCTTTACG		59	NA	
Drosophila melanogaster	50	Tango14	FBgn0031312	FBtr0077961	1	1	1	107	2L	1159432	1159450	GGTTATGTGAACGGTTCAC		58	1159809	1159827	ACTGTCTTCGTACAACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33127	FBgn0053127	FBtr0078052	1	1	1	64	2L	322202	322221	CCTGACATTGAGGGATACAG		59	322246	322266	CGTAGCCATCTATAATCAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11455	FBgn0031228	FBtr0078118,FBtr0078117	3	2	2	113	2L	155730	155748	GATCTCCGACTTTCAGGAG		59	155898	155916	AATTCTTGTCCCTTACGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	roX2	FBgn0019660	FBtr0073514,FBtr0073515	1	2	2	62	X	11473812	11473830	AAGAGTAACGATTTCCGCA		59	11473856	11473874	ATCTCACTGTCCGTAAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HERC2	FBgn0031107	FBtr0077299	3	1	1	62	X	20271286	20271305	GAAGTCGTTGCATCATTCTG		59	20271330	20271418	CCGACTCACAGTTGTATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Cdc42	FBgn0010341	FBtr0074751,FBtr0074752	3	2	2	64	X	19592046	19592065	TGCTCATCTCGTATACAACC		59	19592092	19592110	ATAGTTGTCGAACACCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TH1	FBgn0010416	FBtr0074305	1	1	1	138	X	16284087	16284105	GCATGCTAAACAAGGAGGA		59	16283899	16283986	ACCACAGGATATTTGATGCA		59	NA	
Drosophila melanogaster	50	CG9911	FBgn0030734	FBtr0074241,FBtr0074242	3	2	4	146	X	16190154	16190350	TAGTTGCGATTCTACAGCT		58	16189294	16189312	TACTAAACCGACACCACTC		58	NA	
Drosophila melanogaster	50	fs(1)h	FBgn0004656	FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119	2	5	5	117	X	7944306	7944477	CAAGAAAGATGAGTCCGCT		59	7944207	7944225	ACTCGAACTGCTATCACTC		58	NA	
Drosophila melanogaster	50	Spx	FBgn0015818	FBtr0070894	3	1	1	99	X	6149975	6150067	AAGATGCCACCATCTATGC		59	6150130	6150206	ATGTGTACGTTCACCACTG		59	NA	
Drosophila melanogaster	50	CG4096	FBgn0029791	FBtr0070805	1	1	1	147	X	5601210	5601228	GAAGCGGTACAAGATTTGC		59	5601336	5601419	CTTGCAGGGATTATTCTTATCG		58	NA	
Drosophila melanogaster	50	elav	FBgn0000570	FBtr0114366,FBtr0070091,FBtr0100254	3	3	3	61	X	412376	412394	ATTCGATTCGATAAGCGGG		59	412333	412351	GGTGTAGTACCGTTCAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cin	FBgn0000316	FBtr0070064,FBtr0070065	3	2	2	82	X	150606	150624	TATGCCATGAAGTCCACTG		59	150667	150808	GGCAAAGAATTAGGTGAATCTC		59	NA	
Drosophila melanogaster	50	CG40188	FBgn0058188	FBtr0113821	2	1	2	60	U	2235946	2235966	GTTTAATCGGGAAGATGAACG		59	2235987	2236006	TTACGCAAGAGTACATATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Caps	FBgn0053653	FBtr0091630,FBtr0091631	3	2	3	105	4	1259628	1259646	GCTGTTGACATGGATAGAG		57	1259714	1265686	GCAAATTGTCATCAGTTCTC		57	NA	
Drosophila melanogaster	50	Syt7	FBgn0039900	FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475	3	5	6	156	4	323148	325657	GTAGTTATAGTCTTCGGGCTG		59	323012	323033	CCAATCAAAGGAGTTCTAAGAC		58	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	3	14	14	110	3R	27690344	27690864	TAAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	Gprk2	FBgn0004834	FBtr0085788	3	1	1	156	3R	27279102	27279121	AATGCATCAACCTGAAAGAC		58	27279299	27279381	ATCTCGTATTTGACCACCT		57	NA	
Drosophila melanogaster	50	CG31033	FBgn0039705	FBtr0085530,FBtr0085529,FBtr0085528	2	3	3	90	3R	25653856	25653876	GCAATTACCTCATATGCTCTG		58	25653707	25653804	TGTTCGTTTGTAAACGTGG		58	NA	
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	3	7	8	82	3R	24639656	24639675	TTACTGCTACGGATATTGGC		59	24639719	24640879	GCTCAAACACCTTATAGCAG		58	NA	
Drosophila melanogaster	50	CG34437	FBgn0085466	FBtr0112738	2	1	1	70	3R	24109731	24109750	ATAACAACTGCTAGTTGCGT		59	24109842	24109862	GGTATATTGTCAAACCTTCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	pll	FBgn0010441	FBtr0085179	2	1	1	133	3R	23077736	23077754	GTCTACCAGCTGATGAAGG		59	23077558	23077640	AGAAAGTAGATGCCTCTAGC		58	NA	
Drosophila melanogaster	50	CG31120	FBgn0051120	FBtr0089439	2	1	2	61	3R	20742210	20742228	TTCGGATACCTTGAAGTGG		58	20742167	20742185	CCAGCACTTCATAGTTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myo95E	FBgn0039157	FBtr0100517,FBtr0084579,FBtr0084578,FBtr0100518,FBtr0100519,FBtr0100516,FBtr0100520	2	7	7	97	3R	19985254	19985382	CTCTAGTCGATATGGAAAGCT		58	19985028	19985046	GATAGGGTCCGTTATACGG		58	NA	
Drosophila melanogaster	50	CG31140	FBgn0051140	FBtr0113393,FBtr0084497,FBtr0113392,FBtr0084498,FBtr0084499	3	5	5	81	3R	19792355	19792373	AAGCCAACATACTGTCACC		59	19792417	19798181	TAAAGTTGCAAACTTCGCAG		59	NA	
Drosophila melanogaster	50	Aats-glupro	FBgn0005674	FBtr0084511	1	1	2	98	3R	19782482	19782558	ACCAAATACAAGGTGTACCC		59	19782403	19782421	GTCATGGTACTCAGTGGTG		59	NA	
Drosophila melanogaster	50	CG4424	FBgn0038765	FBtr0083841	2	1	1	87	3R	15852660	15852791	CCTAGTTAAGCATGAAAGAACC		59	15852594	15852612	AAGGACACTGGCATATGTG		59	NA	
Drosophila melanogaster	50	Cpr92A	FBgn0038714	FBtr0083811	3	1	1	76	3R	15423766	15423784	CCAGTACCAGCTCATTACG		59	15423708	15423726	GGATACGAAAGCAGAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8795	FBgn0038139	FBtr0100149,FBtr0082774,FBtr0082773	3	3	3	132	3R	9157366	9157631	TTGTTATGCTCAGGAATGC		58	9157252	9157270	TAATGGTTAGAACTGTCGC		57	NA	
Drosophila melanogaster	50	Vha55	FBgn0005671	FBtr0082670,FBtr0082671	1	2	2	171	3R	8450715	8450734	TGTATCTGGAGTTCTTGACC		58	8450502	8450520	TCCCTAGGGTAGAATTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34360	FBgn0085389	FBtr0114581,FBtr0112576,FBtr0114582	3	3	5	262	3R	5701913	5701934	GTGATTGTCAAGATCACAACAG		59	5769232	5769250	AGATAGTTGCCGTAGTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16908	FBgn0037741	FBtr0082166	3	1	1	103	3R	5577208	5577284	AGCCTTAGTGATGTGATACC		58	5577124	5577142	TGCAGTTTGTACTCCTGAG		59	NA	
Drosophila melanogaster	50	Alh	FBgn0037471	FBtr0113199	3	1	6	87	3R	2922537	2922621	ATTTGGGAATGAGACACGT		59	2922468	2922486	CTACTGGCAGTTAAGCTCC		59	NA	Nonspecific
Drosophila melanogaster	50	CG14612	FBgn0040670	FBtr0081562	2	1	1	79	3R	2919899	2919918	GTTACGCAGTCAAGATAAGG		58	2920022	2920040	TAATGTCCTTGTGCCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab23	FBgn0037364	FBtr0078727	2	1	1	137	3R	1508446	1508464	GATGCGTCTAATCCAAACG		58	1507623	1508346	CCATTTCCAACAATGACCAC		59	NA	InUTR
Drosophila melanogaster	50	CG32945	FBgn0052945	FBtr0078896	1	1	1	60	3R	404241	404259	TGAGATTACTCGGGATGTG		58	404199	404218	GAGTTCAGTACTTATGACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41454	FBgn0084017	FBtr0111173	1	1	1	144	3L	23131362	23132879	ACATTCGTTGACTTTCCTC		57	23132987	23133005	AACAGCGACGGATATAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11241	FBgn0037186	FBtr0078536	2	1	2	111	3L	22727830	22728020	CTTCATGGAAACGTTCTGC		59	22727737	22727756	TATTCTCGGGTAGAGTCTCC		59	NA	
Drosophila melanogaster	50	CG7145	FBgn0037138	FBtr0078446,FBtr0078447,FBtr0078445	3	3	3	83	3L	21830928	21830946	TTGAGACCATGAAACTGGT		58	21830810	21830881	ACTTGACGAAATCCTCGTC		59	NA	
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0078260	1	1	10	165	3L	20822631	20825954	AATGCCTAAGGAACAAGTC		57	20826083	20826101	CTTAACATAGTTGGTGGCA		57	NA	InUTR
Drosophila melanogaster	50	CG5047	FBgn0037008	FBtr0078215	2	1	1	60	3L	20513565	20513583	TGTGAACAACTCGAGTACC		59	20513523	20513542	AATACTGTGCAGATCCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5059	FBgn0037007	FBtr0078218,FBtr0078216,FBtr0078217,FBtr0078219	1	4	4	116	3L	20508982	20509000	TGATGAGCTCAGAAACGTG		59	20508709	20508828	TCAATGTTCCAGCTACTGG		59	NA	
Drosophila melanogaster	50	Smn	FBgn0036641	FBtr0075395	1	1	1	65	3L	16573667	16573685	ATGTCCGGCTATTATACGG		58	16573620	16573638	TTTCTTTCCGCTAGTGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9238	FBgn0036428	FBtr0075724	2	1	2	81	3L	14543149	14543167	TATTCAGTCACAGTCCACC		58	14540571	14543105	TCGTCATTGTAGTTCAACGA		59	NA	
Drosophila melanogaster	50	CG17826	FBgn0036227	FBtr0076042	2	1	1	60	3L	11943290	11943309	TTACACCGAATCCAGATGAC		59	11943332	11943350	ATCACTATGATTCCGTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32043	FBgn0052043	FBtr0114368	2	1	4	95	3L	9463530	9463670	ACGGAAATCTACACGAAGG		59	9463728	9463747	TAGATTCCACTTACCAGCTG		58	NA	
Drosophila melanogaster	50	CG8628	FBgn0035744	FBtr0076914	2	1	1	99	3L	7124092	7124110	TACTAGCAACATGGTGTCG		59	7124305	7124324	GAAGAGACCGTAGAATTCCA		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133	1	5	11	192	3L	3578467	3593333	TTGCAGATATGGAGACTGG		58	3593488	3593507	CTGTTTGTTCAGAAAGACCT		57	NA	
Drosophila melanogaster	50	RpL28	FBgn0035422	FBtr0073097,FBtr0073095,FBtr0073096,FBtr0073098	1	4	4	87	3L	3221935	3221954	CAATTGGTTGATCATTCGCA		59	3221695	3221885	CAAGTTGTTTGGCTCTGTG		59	NA	Nonspecific
Drosophila melanogaster	50	RabX5	FBgn0035255	FBtr0072804	1	1	1	71	3L	1669611	1669688	TACAGTCTGGAAATGTGGG		58	1669558	1669576	ATTGCGATAATAGGCTCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG30217	FBgn0050217	FBtr0071925,FBtr0071926	2	2	2	60	2R	18543254	18543342	GTCCACTTTATCCTGTTGCT		59	18543213	18543231	TTGCAGACAGGAATAGACG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	NiPp1	FBgn0026402	FBtr0087058	3	1	1	91	2R	12892052	12892070	GCAACATCATGGAAGACCT		59	12891918	12891998	TGTGAGATTATCAAGCTCCG		59	NA	
Drosophila melanogaster	50	CG6704	FBgn0033887	FBtr0087609	3	1	1	102	2R	9858183	9858256	CCATTCTTTGAATTTCCGC		57	9858099	9858120	CTATCTTCTCAATGAACTCCAG		57	NA	
Drosophila melanogaster	50	EfTuM	FBgn0024556	FBtr0087670	1	1	1	62	2R	9396194	9396212	TTCGTGGGCTATAACAAGG		59	9396238	9396256	AATCTGGTGGAACATCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tou	FBgn0033636	FBtr0113066,FBtr0088091	3	2	5	80	2R	7477435	7477515	ATGATGGGTACTGGAAGTG		58	7477373	7477393	GGACGTGTACTTGATTATCTC		57	NA	
Drosophila melanogaster	50	CAP	FBgn0033504	FBtr0088342,FBtr0088343	1	2	10	128	2R	6180357	6180375	GTGTCTCCGACAAGATCAG		59	6180932	6181135	CTTTGTAGATGACTTCATTGGG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111072,FBtr0111058	2	2	60	84	2R	3246840	3249231	TCATCACAGAACCAATTGGT		59	3246775	3246793	CTCAGCAATCTCTTGACCT		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111088	1	1	60	112	2R	3236476	3242809	GTTCCTGCATTCAGATGGT		59	3236382	3236403	ACTGCGTCCTTAATAATGAGAG		59	NA	
Drosophila melanogaster	50	gp210	FBgn0033039	FBtr0086044	2	1	1	80	2R	1652646	1653006	AACTGCAGGAATAGAGTATCAG		59	1653047	1653065	GTGATTGTTGCCTTTCCAG		59	NA	
Drosophila melanogaster	50	CG9270	FBgn0032908	FBtr0081436,FBtr0081435	2	2	2	91	2L	20930076	20930152	CTTAGAAGAGGTGCACCTC		59	20930003	20930022	CTACACTGTAGTTGGATCCG		59	NA	
Drosophila melanogaster	50	CG9331	FBgn0032889	FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081419	1	4	5	134	2L	20825962	20825980	AAAGAGACGTAAGATCCCG		58	20826078	20826641	CACTTGTCATTGTCGATGG		58	NA	
Drosophila melanogaster	50	CG17549	FBgn0032774	FBtr0081221,FBtr0081220,FBtr0081219	1	3	3	118	2L	19388088	19388108	CATCGATCCGTATCTATTCCA		58	19387720	19387738	CTAGATTGTCGTGGTAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17568	FBgn0032763	FBtr0081233	2	1	1	110	2L	19179979	19180055	GAACTTCGCGTTATGACTC		58	19179887	19179905	ACATTCCTATCTGATGCCA		58	NA	InUTR
Drosophila melanogaster	50	Nak	FBgn0015772	FBtr0081189,FBtr0081187	1	2	3	96	2L	18965179	18965272	ATGATGAATGCGAGATTGC		58	18965101	18965120	GACAATAGTGCAATCGAGAG		58	NA	
Drosophila melanogaster	50	CG13284	FBgn0032614	FBtr0080927,FBtr0080926	1	2	2	142	2L	16843628	16843646	AAATGAATGCCTACACCGA		59	16843386	16843522	AATGGCATACTGAATGCCA		59	NA	
Drosophila melanogaster	50	CG15279	FBgn0028886	FBtr0080686,FBtr0080685	1	2	3	160	2L	14847047	14848681	GATGAAAGGTGTTGGAGCT		59	14846905	14846924	AGTTAATGCAGTGGATACCC		59	NA	
Drosophila melanogaster	50	Oatp30B	FBgn0032123	FBtr0079827,FBtr0079828,FBtr0079826,FBtr0079825	1	4	4	81	2L	9537728	9537811	GCATATGGATTATTGCTACGAC		59	9537853	9537871	CTTAGACTTGGTCTGTGGC		59	NA	
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567	1	8	9	163	2L	8089727	8105702	CAATCACTTGATAAGCTGGTG		59	8106857	8106875	GAAGGTACATCCGTCACAG		59	NA	
Drosophila melanogaster	50	Gr28b	FBgn0045495	FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458	3	5	5	118	2L	7455130	7455212	TTGTATTTCACGATCAGCG		58	7455030	7455049	TTATTGAAGGTCTCACAGCA		58	NA	
Drosophila melanogaster	50	chic	FBgn0000308	FBtr0079233,FBtr0079235,FBtr0079236,FBtr0079234	3	4	4	117	2L	5976614	5976632	CACTGCATGAAGACAACAC		59	5973579	5973597	AGTACCCGCAAGTAATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CoRest	FBgn0053525	FBtr0091483,FBtr0091484	3	2	5	97	X	19422848	19422936	AACTTTCCTACGATTGCCA		59	19422997	19423015	ATCTGGTCGAGATTGTAGC		58	NA	
Drosophila melanogaster	50	CG32495	FBgn0052495	FBtr0089800	3	1	3	168	X	17797999	17798017	TTGCGATCCGACTATATGG		59	17798677	17798840	TATCCGGCATATTGTGCAG		59	NA	
Drosophila melanogaster	50	CG8119	FBgn0030664	FBtr0074051	2	1	1	61	X	15556958	15556977	GCAAGCTAATTCTACATCCG		58	15557001	15557019	TTTGAATGCCGAATAGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32588	FBgn0052588	FBtr0074025	3	1	1	81	X	15100115	15100214	CTCCATTGTATTTATCACTCCG		58	15100055	15100073	GACATACACATCGATGGTC		57	NA	
Drosophila melanogaster	50	CG14423	FBgn0029646	FBtr0070556	3	1	1	60	X	2839752	2839772	AGTTCCTAACCTTCAAGAACC		59	2839793	2839812	ATAATGATCGGAATCACGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF2B-beta	FBgn0024996	FBtr0070479	1	1	1	71	X	2599945	2600031	TTCATATCCAACACCGGTG		59	2600066	2600084	TTCGGGATGATACAGTTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	cul-5	FBgn0039632	FBtr0085417	3	1	1	154	3R	24886673	24886751	AAGACATAAAGGTCAGCGA		58	24886537	24886555	AATATAGTCCTCGAGCTCG		58	NA	
Drosophila melanogaster	50	CG6503	FBgn0040606	FBtr0085025	1	1	1	82	3R	22250615	22250633	ATAGTGCCGAGAACAATCG		59	22250551	22250569	GATGTTCAGGCTGTAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5778	FBgn0038930	FBtr0113265	3	1	2	115	3R	17911578	17911963	GCTACGACTGTAATCCACC		59	17911481	17911499	GTTGTAGTATCCTCCACCG		59	NA	
Drosophila melanogaster	50	CG3983	FBgn0038473	FBtr0083426,FBtr0083425	2	2	2	80	3R	12897404	12897424	AAGAGCTCCATCATAAACTCG		59	12897282	12897363	TTGCATTGATTTGGTCACTC		59	NA	
Drosophila melanogaster	50	CG17556	FBgn0038462	FBtr0083375	2	1	1	61	3R	12820778	12820861	GAAATACGATACACAATGGGTG		59	12820738	12820756	TGCGAATAGTAAGTGCGAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG9722	FBgn0038209	FBtr0082906	3	1	1	60	3R	9979436	9979457	GTACATCAGTATGGAAATCGGA		59	9979397	9979415	CTGTATATCTTCCCAGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yellow-f	FBgn0041710	FBtr0082723	3	1	1	71	3R	8818232	8818250	GAACCTCAGTGGATGTCTG		59	8818113	8818197	GGCGATTATTGGGAAACTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG18554	FBgn0038060	FBtr0082676	2	1	1	63	3R	8343797	8343815	TCAATCCGCAGATATGGAC		59	8343752	8343770	GAATGCTCCTTATCGAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4860	FBgn0037999	FBtr0082623	2	1	1	119	3R	8046705	8046853	GTTCGAGAGGAGTATGGTG		59	8046604	8046622	CAGGTACAGGTTATTCACG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14681	FBgn0037820	FBtr0100117	3	1	2	300	3R	6515459	6515477	AACTTTAGCTACGACGGAG		59	6516219	6516237	CGTTCTTCTTTACCTGAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Taf7	FBgn0024909	FBtr0114520,FBtr0081756	3	2	2	60	3R	3733714	3733734	CAGATACTGTACACGAAACTC		58	3733756	3733774	CAATGGTCTTGTAGCTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14656	FBgn0037278	FBtr0078878	2	1	1	144	3R	623417	625429	ATTGGTGAACTTGGTGGAG		59	623291	623309	GTTGTTGATAACCGGACGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	HLH106	FBgn0015234	FBtr0074873,FBtr0074875,FBtr0074874	3	3	3	104	3L	19790267	19790285	TCTTCACGTACGATCTGAG		58	19790350	19790440	GCTCTCGATATTGCTTAATGAC		59	NA	
Drosophila melanogaster	50	CG9392	FBgn0036895	FBtr0074948	1	1	1	176	3L	19613792	19613872	CGTATCTCAGCTATTCGGA		58	19614012	19614030	TTACAGTGGCATTTGAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fry	FBgn0016081	FBtr0076417,FBtr0110843	3	2	2	80	3L	9625378	9625397	GAAGTGGGATGAAATTTCCG		59	9625255	9625338	GATACTATAAAGGCTTCTGTGC		58	NA	
Drosophila melanogaster	50	jbug	FBgn0028371	FBtr0071918,FBtr0071917	3	2	3	86	2R	18618377	18618395	TTATTCTCCCAATAGCGCC		59	18618238	18618330	TCGTAACCATTCTTACTAACGG		59	NA	
Drosophila melanogaster	50	CG18537	FBgn0034323	FBtr0086759	1	1	1	60	2R	14183673	14183692	AAAGTTTGGAATATCAGCGC		59	14183715	14183796	CACCATTGTCTCCTCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	lolal	FBgn0022238	FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778	1	4	4	80	2R	14042986	14043404	TCACAGATGTAACACTCGC		59	14042924	14042942	TAAAGTAGGGACTGCAAGC		59	NA	
Drosophila melanogaster	50	CG14482	FBgn0034245	FBtr0086905	1	1	1	67	2R	13460016	13460162	TTCCTTCATCCGATCTGGA		59	13459967	13459985	AGTCGGTGTAGTAAAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Got1	FBgn0001124	FBtr0087231,FBtr0087232	2	2	2	122	2R	12027835	12027853	CTTACAGGACAGATGCTGG		59	12027938	12028019	TGAATGTTTCGAGTCCAGTC		59	NA	
Drosophila melanogaster	50	nec	FBgn0002930	FBtr0089052	2	1	1	107	2R	3044374	3044392	ACCAAGTTGATGGATCAGC		59	3044219	3044303	GAACTTGGCATAGGAAGCT		59	NA	
Drosophila melanogaster	50	mle	FBgn0002774	FBtr0086031,FBtr0100576,FBtr0086030	3	3	3	88	2R	1866882	1866900	TTAAGGGTTTGGACCTTCC		59	1866171	1866832	GCTTAAGTTCACAATGAGAGG		58	NA	
Drosophila melanogaster	50	CG31624	FBgn0051624	FBtr0081491	2	1	1	81	2L	21199529	21199548	GAAGCCTATAACGGACTCAG		59	21199467	21199485	ATTCTCGCATTTGTTGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9331	FBgn0032889	FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081419	1	4	5	134	2L	20825962	20825980	AAAGAGACGTAAGATCCCG		58	20826078	20826641	CACTTGTCATTGTCGATGG		58	NA	
Drosophila melanogaster	50	CG13136	FBgn0032186	FBtr0079965	1	1	1	63	2L	10136735	10136756	CGTCTATGGATTCAACATTACC		58	10136693	10136711	CGTATTGCACTGTGTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2862	FBgn0031459	FBtr0077718	2	1	2	67	2L	2770391	2770468	GGATGATAAATGCGTTGCC		59	2770499	2770517	GAGGAATCACGAGGAAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3528	FBgn0031430	FBtr0077781	2	1	1	64	2L	2517592	2517663	AAAGCAAATTTCGACCGTC		59	2517546	2517564	AGCTGGAGATCTCTAGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089429,FBtr0089431,FBtr0089430,FBtr0089436,FBtr0089435,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437,FBtr0089428	1	10	10	114	2L	113362	113445	ATTGTCAAGGACCTAAACCT		58	113522	113540	AGTTGTCAATCTCCAGAGG		58	NA	
Drosophila melanogaster	50	tRNA:R:85Ca	FBgn0011966	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-289	FBgn0067703	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi18S-1854b	FBgn0083041	FBtr0113569	1	1	1	62	X	17039686	17039704	TGATCCTTACAGGGTTGTG		58	17039642	17039661	GAGGAATAGCTAATCATGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32819	FBgn0052819	FBtr0070050	1	1	2	252	X	21490588	21490729	GAACATGAATCGCAACCTC		59	21490354	21490372	GATGTGCAGTGGTATCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077207,FBtr0077204,FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077206,FBtr0077210	1	8	8	102	X	21253981	21254060	AACACGATTGTAAAGGCTG		58	21254126	21254144	TCATTTCCAGGGTGATACG		59	NA	
Drosophila melanogaster	50	CG34120	FBgn0083956	FBtr0110827	3	1	2	81	X	21004908	21004926	CATCAAGCCGATTATCCAG		58	21004970	21005056	GGCATTACTAAACTTCACCA		57	NA	
Drosophila melanogaster	50	CG1631	FBgn0031101	FBtr0077297	1	1	1	60	X	20198683	20198702	TTTCGGATATTTCCACTAGC		57	20198724	20198743	TCGCTATCGCTAGTATAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	D2R	FBgn0053517	FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461	3	4	5	81	X	19905587	19920745	ACTTTCTGGTAAATGGAGC		57	19905524	19905544	GAAGTAGAGCATATCACATCC		57	NA	
Drosophila melanogaster	50	inx5	FBgn0030989	FBtr0074698	2	1	1	60	X	19063118	19063136	GATGATGAAGGTTAGCGTC		57	19063076	19063094	AAGTTCCTGCATTAGGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Frq1	FBgn0030897	FBtr0074545,FBtr0100239	3	2	2	153	X	18062517	18063531	GAGAACAATGATGGCTCCA		59	18063774	18063794	CTATGTTGTACATCTCCTCCC		59	NA	
Drosophila melanogaster	50	CG15373	FBgn0030889	FBtr0112999	2	1	2	80	X	17938910	17938928	CTCAAACAACATCTGGACG		58	17938969	17939069	TACACCAGGTCTATCAATTTCC		59	NA	
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089657,FBtr0089661	2	2	7	102	X	17836890	17836908	AACTACTTCTATCACCGCG		59	17835182	17836826	TGTGTTGACCTAATGTACCTG		59	NA	
Drosophila melanogaster	50	ppk23	FBgn0030844	FBtr0112998,FBtr0100574,FBtr0074491	1	3	3	122	X	17462374	17462392	AACAGTCGTTTCAAGTCCA		59	17462088	17462223	GATAAAGATACGTGAAGTGCTG		59	NA	
Drosophila melanogaster	50	CG5445	FBgn0030838	FBtr0074425,FBtr0074427,FBtr0074426	3	3	4	85	X	17197412	17198114	GATGAGTAACTGGAGCCTG		59	17198163	17198181	GGACGATCTTCATCGAAGG		59	NA	Nonspecific
Drosophila melanogaster	50	Arpc3B	FBgn0065032	FBtr0113478,FBtr0074410	2	2	2	60	X	16999621	16999639	CCTTCTACCACTACGTACC		58	16999579	16999598	GTCGTTGGGAATATCAACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4829	FBgn0030796	FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337	3	5	5	93	X	16718722	16718740	CGAGAAGGGATACCATGTG		59	16718794	16718964	CAAATAGATTTGGTACTGCTCG		59	NA	
Drosophila melanogaster	50	Rbp2	FBgn0010256	FBtr0074281	1	1	3	152	X	16344621	16345313	AGAGGATACAATGATCGGC		58	16345429	16345447	GAAGTTGTTGTAGCGATCG		58	NA	
Drosophila melanogaster	50	CG4301	FBgn0030747	FBtr0074272	3	1	1	90	X	16308046	16308131	ATCAATCTGGACTACGACAC		59	16308184	16308202	CACAGGTCACTATGATCCA		58	NA	
Drosophila melanogaster	50	Stim	FBgn0045073	FBtr0074161	1	1	3	80	X	15831778	15833078	AGAGCATAAGTTCCATGGG		59	15831716	15831734	GAACACTTCCACTGTAGCA		59	NA	
Drosophila melanogaster	50	UBL3	FBgn0026076	FBtr0074174,FBtr0074175	1	2	2	86	X	15744638	15744656	CACTGGGACTTCCATTAGG		59	15744453	15744591	GTCTTTGATCTTGTGAATTGGG		59	NA	
Drosophila melanogaster	50	Ac13E	FBgn0022710	FBtr0074073,FBtr0100142	1	2	2	60	X	15410385	15410403	CGATGCCTACTACTTGGAG		59	15410283	15410301	CACCACGAAGTAAGTACGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6324	FBgn0030647	FBtr0074037	2	1	1	144	X	15374529	15374547	GGACATTACTGGGACATCG		59	15374751	15374998	TTATTAAAGCGACGCTTTGC		59	NA	
Drosophila melanogaster	50	CG9400	FBgn0030562	FBtr0073920,FBtr0112982	3	2	2	61	X	14182365	14182384	ACAATGATTTAGACAGCGAG		57	14182323	14182344	GGGTATATTGTTGTCCAAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS15Aa	FBgn0010198	FBtr0073792,FBtr0073793	2	2	4	60	X	13230407	13231550	CAAACAAATCCAGCCATGG		59	13230365	13230383	TGTTTATGCACTTCAAGGC		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	mRpL49	FBgn0030433	FBtr0073691	1	1	1	112	X	12801658	12801676	TCCAAGGAGACATTTGGAC		59	12801752	12801770	GAAGTGTATCTGACCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4404	FBgn0030432	FBtr0073694	2	1	1	60	X	12798360	12798379	GCAGAATCGAAAGTTTCGAC		59	12798319	12798340	CTTGTTATCCAGAATATCGTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15734	FBgn0030374	FBtr0110815,FBtr0073636	2	2	2	62	X	11980869	11980887	CTTGACTATTATTCGCCCG		58	11980745	11980763	AATCAATGCATTCTCGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fw	FBgn0001083	FBtr0112806,FBtr0073580	1	2	2	97	X	11888948	11889034	ACCTATAAGATTGGAGCACTG		59	11888871	11888889	CTCCATTGTCCACTATCCG		59	NA	
Drosophila melanogaster	50	PhKgamma	FBgn0011754	FBtr0090001,FBtr0090000	1	2	3	80	X	11592561	11592579	TCTAGTCGTTGATCCTTCG		58	11592623	11594664	CCCATTAACACCATTTGGT		57	NA	
Drosophila melanogaster	50	CG2157	FBgn0030244	FBtr0073382	3	1	1	114	X	10764122	10764219	CTCTGGGTGGATTAGATGG		58	10764297	10764315	GATCCATAGCCACCAAGAG		59	NA	
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	2	8	9	95	X	10692568	10692661	CGAATAAGGGTGAAATTTGC		57	10692492	10692510	GCATGATCCGTTTAATGGT		58	NA	
Drosophila melanogaster	50	Hex-A	FBgn0001186	FBtr0071361,FBtr0071362	2	2	2	60	X	9481077	9481095	GCCATACTCAATGACACCA		59	9481119	9481137	TGCAGTTGTGATTCTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297	3	4	6	120	X	9005028	9005123	TCCGAGCATGGATTTAATCC		59	9005449	9005467	GAATCTGTCGGATGAGGTC		59	NA	
Drosophila melanogaster	50	sdt	FBgn0003349	FBtr0100376	1	1	7	81	X	8104009	8104030	GCATCTCTGATGAAGAATTGTG		59	8104067	8104454	CTATGACGTCTTCTAGTAACTCTC		59	NA	
Drosophila melanogaster	50	CG9650	FBgn0029939	FBtr0112959,FBtr0112957	2	2	6	122	X	7126488	7126507	TAAGTTCATCCAGCACAAGG		59	7126591	7126955	ATTGTCGTTCTAAGGCTGAG		59	NA	
Drosophila melanogaster	50	PpV	FBgn0003139	FBtr0070921	2	1	1	76	X	6266311	6266329	GATTTGCTTACCATCGCTG		59	6266165	6266184	GTAATGATCTCGGGACTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3016	FBgn0029819	FBtr0070828	3	1	1	114	X	5771723	5771741	CCAAGAATCTTTACCGGCT		59	5771569	5771645	GTGTAGTACCACCGATGTG		59	NA	
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070769,FBtr0070766	3	5	7	96	X	5292152	5292440	AACTGACATGGCTAAGACAC		59	5292498	5292517	CTCTAGGTTGGTTAAACGCT		59	NA	
Drosophila melanogaster	50	l(1)G0334	FBgn0028325	FBtr0070708,FBtr0070710,FBtr0070709,FBtr0070711	1	4	4	145	X	4598141	4598234	ACAACAACTACGGAATGGG		59	4598343	4598361	ATAGTTGATGGCGAACTCG		59	NA	
Drosophila melanogaster	50	Mnt	FBgn0023215	FBtr0070579,FBtr0070578	3	2	3	91	X	3593512	3593727	CGACAAAGCAGTTTGTCTG		59	3593780	3593800	CTGCATCGAATAGAATTGTGG		59	NA	
Drosophila melanogaster	50	CG10802	FBgn0029664	FBtr0070568	3	1	1	66	X	3377283	3377301	GATACTATTTCCCGAGGGC		59	3377331	3377349	CTTAACTGGAAATCCGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2918	FBgn0023529	FBtr0070411	2	1	1	95	X	2168125	2168144	GGTATCAAGGATCCCAACTC		59	2167975	2168070	GAAGCGTTTCCTATACAAATCC		59	NA	
Drosophila melanogaster	50	CG14812	FBgn0026090	FBtr0070372	1	1	1	105	X	1752907	1752925	AACTGGAGAAAGTCCTAGC		58	1752693	1752711	GGATCAATGTCTCCTTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Adar	FBgn0026086	FBtr0070299,FBtr0100557,FBtr0070300	3	3	3	60	X	1677571	1677591	AAAGTAACCACTGACTATGGG		59	1677613	1677698	GCTTTGCGATCTGATAGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	vnd	FBgn0003986	FBtr0070110,FBtr0110929	3	2	2	86	X	488326	490393	GAACGAGCTATACGGTACC		59	490442	490461	GAACCAATGTAGGTGTACGA		59	NA	
Drosophila melanogaster	50	CG13377	FBgn0040369	FBtr0070106	3	1	1	68	X	152937	152955	AGTCATTGTACAAGGCACC		59	152823	152841	CTGTATACTGCGTAGGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40339	FBgn0058339	FBtr0113867	2	1	2	137	U	1062289	1062307	GTACCCAATGGTGATTGAG		57	1062853	1062871	TGCCTTTCGTTATCTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0100344,FBtr0100342,FBtr0100343,FBtr0089327,FBtr0100345	1	5	7	82	4	1128897	1128918	GCTTTACGACAGTATTACAACG		59	1128961	1129108	AACCTGTTCCAATGGAAGG		59	NA	
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211	2	4	7	182	4	1080191	1080209	CAACACAACCTCTCAACAG		58	1079960	1080047	TATGAGAAGAGTCCATTGCAG		59	NA	
Drosophila melanogaster	50	CG32021	FBgn0052021	FBtr0089244	2	1	1	141	4	928347	928366	TAACTTCTGATGATGTCGCC		59	928156	928174	TTTAAGGCCCTACGATCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131	3	5	5	84	4	372565	372585	CGATATACCACAACATGTTGG		59	372445	372522	GTGTCCAGCCATTATATTTGAG		59	NA	
Drosophila melanogaster	50	CG1774	FBgn0039856	FBtr0085798	2	1	1	60	3R	27419468	27419486	GATCAGTGGTCACATCTCG		59	27419507	27419528	CCTCACATAGATGGTAATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15556	FBgn0039821	FBtr0085737	1	1	1	60	3R	26955216	26955236	TCCAGAAGTGAGAAATGTGAG		59	26955176	26955194	GAAATGCGACATATTGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PH4alphaSG2	FBgn0039779	FBtr0085653	1	1	2	185	3R	26316038	26316108	CTACCGCAGGTATGTTGAG		59	26316257	26316330	AATGCACGGAACTCTTCTC		59	NA	
Drosophila melanogaster	50	CG31025	FBgn0051025	FBtr0085587,FBtr0085586	1	2	2	161	3R	25953565	25953634	TTTCAATGTCAGGATTCCC		57	25953422	25953440	ATTTCCCTCACCTAGAACG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG15526	FBgn0039744	FBtr0085562	3	1	1	68	3R	25882148	25882167	CATATCCATTGAGCTCATCG		58	25882197	25882216	TTGGATGTTTCCAAGATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7903	FBgn0039730	FBtr0085608	3	1	1	211	3R	25820053	25820071	ATAGTGACTTTCAGGGAGG		57	25819801	25819879	TGGATTTCCTCCATTAGTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG31202	FBgn0051202	FBtr0085510	3	1	1	60	3R	25754754	25754773	CAGGCGATAGAGAAGTACTG		59	25754713	25754731	TGTTAACGTCCATCACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15506	FBgn0039686	FBtr0085456,FBtr0085457	3	2	2	60	3R	25547605	25547625	TATCCTTACAGCCAGTATCCA		59	25547645	25547665	AGTAGTTCTGCCTTATGAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ef1gamma	FBgn0029176	FBtr0085392,FBtr0085393	1	2	2	190	3R	25046028	25046168	GGAACTCTGTACACTTACCC		59	25046384	25046402	CTCAAGTACTGTCCTTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14518	FBgn0039621	FBtr0085341	2	1	1	98	3R	24851100	24851118	ACGATCAATCACACCTGTC		59	24851688	24851707	ATATTCTCCAGTGGGAATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Mes-4	FBgn0039559	FBtr0085267	1	1	1	121	3R	23761873	23761891	GACAAAGGTTGTCATCTGG		58	23761702	23761789	GCCTATTAAGAGTGACAACG		58	NA	
Drosophila melanogaster	50	Ets98B	FBgn0005659	FBtr0085224	1	1	1	211	3R	23570241	23570319	CAAATATCGCAGGATCCCA		59	23572154	23572172	TTCCAAATTTCCAACTGGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG6599	FBgn0039513	FBtr0085166	1	1	1	80	3R	23187090	23187170	GTCTTCAGATAAAGATGGCC		58	23187213	23187231	CCTATCAAGGTGTCAATGC		58	NA	
Drosophila melanogaster	50	spn-D	FBgn0003482	FBtr0085116	2	1	1	91	3R	22992189	22992364	TCGATCATCCCGATATTAAGC		59	22992417	22992435	AAGCATCTCGTAACGATGG		59	NA	
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085140	3	1	12	142	3R	22892380	22893090	ATCACTTACAGAGGACGGA		59	22892129	22892147	GTCATTCCTCAAAGGACGA		59	NA	
Drosophila melanogaster	50	gro	FBgn0001139	FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963	3	5	5	104	3R	21870081	21870172	CGCCATTATGTTATGTACTACG		59	21870236	21870255	AAGTAGCTGGTTGATCAGTG		59	NA	
Drosophila melanogaster	50	msi	FBgn0011666	FBtr0084881	2	1	2	92	3R	21345444	21389814	AATCTAAGGTTTCAGACACCC		59	21400624	21400642	GGCATATAGAGAAGTGGCG		59	NA	
Drosophila melanogaster	50	CG10550	FBgn0039321	FBtr0084857,FBtr0084858	2	2	3	227	3R	21133346	21133425	ATATACTGCTGAAGGATGGC		59	21133138	21133156	TAATCAATTCGTCAGTGGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG11852	FBgn0039297	FBtr0084809	3	1	1	95	3R	21064138	21064156	TAAGCTCAAGGTTCTGGTG		59	21064270	21064288	AACTGATTCAGATTGGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11844	FBgn0046214	FBtr0084775,FBtr0084777,FBtr0113354	3	3	4	85	3R	20949829	20950321	ATAGAACTGGCGTCAAGTC		59	20950370	20950388	TAAGTCCTCAATGTCCTGC		58	NA	Nonspecific
Drosophila melanogaster	50	tok	FBgn0004885	FBtr0084689,FBtr0084690	1	2	2	86	3R	20568665	20568888	CAGTCACAGAGTCAGAGTG		59	20568938	20568956	ATTCTTGTAGCTGGATGCT		58	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625	1	8	17	81	3R	20521108	20521126	GACGCTGATCAAGAAATGC		59	20521842	20528756	ACGAGTGATATCACCTAAGTC		58	NA	
Drosophila melanogaster	50	Myo95E	FBgn0039157	FBtr0084579,FBtr0100518,FBtr0100519,FBtr0100516	2	4	7	111	3R	19982894	19982994	AGTTTATATCGTGTCGCCC		59	19982801	19982819	ACTGTCTGATCTTCCACTG		58	NA	
Drosophila melanogaster	50	CG12268	FBgn0039131	FBtr0084513,FBtr0084514	1	2	2	93	3R	19769945	19769963	TTCTGCGTCATCTTCTTCC		59	19769812	19769891	GTTGGACATTGAGTAAGAATGG		59	NA	
Drosophila melanogaster	50	Or94b	FBgn0039034	FBtr0084342	1	1	1	60	3R	18815533	18815551	CGATACTTCTACGCTTGGG		59	18815575	18815593	TGTTGGATAGACAGCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	loco	FBgn0020278	FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273	1	4	4	85	3R	18446567	18446653	AGCACCAAGATGAACTACTC		59	18446501	18446519	GTCGAAGTTGATTTCGGTG		59	NA	
Drosophila melanogaster	50	Nrx-1	FBgn0038975	FBtr0084256	1	1	1	106	3R	18304760	18304836	CTATGATGAATCGATTGCCT		57	18304903	18304923	CCAGTGCTATATTATCCTCCT		58	NA	
Drosophila melanogaster	50	CG7069	FBgn0038952	FBtr0084215	3	1	1	60	3R	18199135	18199156	CAATGATAGGGCTGAGATAGAG		59	18199177	18199195	CTTCTTGGTGCTCAATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sar1	FBgn0038947	FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208	3	5	5	60	3R	18184317	18184336	TTCACTACATTCGACTTGGG		59	18185255	18185273	GGAAGTAGTCCTTCCAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	1	22	22	84	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202454	17202549	TTCAGGAATACGATAGCGT		58	NA	
Drosophila melanogaster	50	RpS20	FBgn0019936	FBtr0083964	2	1	1	125	3R	16648269	16648287	GCAAAGAACCAGAACTTGC		59	16648604	16648862	GATTCTCATCTGGAAGCGA		59	NA	
Drosophila melanogaster	50	Nep4	FBgn0038818	FBtr0083936,FBtr0083937	3	2	2	143	3R	16479557	16479577	ATATACATAAGTGGTGGACGG		59	16479272	16479452	CTGCGATATTCTCACCCTG		59	NA	
Drosophila melanogaster	50	CG10877	FBgn0038804	FBtr0083950	3	1	1	60	3R	16388723	16388741	CAAGACCAACAAGGATCGT		59	16388681	16388700	CATTTGCTCTAGGATTCCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpb4	FBgn0053520	FBtr0100273,FBtr0100275	1	2	5	94	3R	14079506	14079584	GAGATTGGAGATCTGCCTG		59	14079430	14079448	TAGTCCAAATACGACTGCG		59	NA	
Drosophila melanogaster	50	CG14330	FBgn0038512	FBtr0083443	3	1	1	212	3R	13282271	13282289	ACTCTTCTACGAGATACCG		57	13282077	13282095	ACTTTGCGGATAGAATAGC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG31266	FBgn0051266	FBtr0083403	3	1	1	60	3R	12958871	12958890	AAAGAATATAACCTTGGCGG		57	12958913	12958931	GGCAAAGGTCAACTTATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8925	FBgn0038404	FBtr0083253,FBtr0113241	2	2	2	114	3R	12005514	12005532	CCGACGTAGTCTTATTGGT		58	12005609	12005688	AATGAGACACTTGGCTATGG		59	NA	
Drosophila melanogaster	50	CG31088	FBgn0051088	FBtr0083241	3	1	1	81	3R	11776229	11776247	CAATGCCATTAACTCGCAC		59	11776113	11776132	TGAATAAGACCCTGAAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31446	FBgn0051446	FBtr0083163	3	1	1	64	3R	11519480	11519498	ATGTCAGCGATAACTCAGG		59	11519707	11519726	ATAATGGTCGAAGGATTGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6125	FBgn0038337	FBtr0083105,FBtr0083106	3	2	2	88	3R	11229093	11229168	TTAAACAGCATGAATCCACG		58	11229024	11229042	CAACTCAGATCGTAGTGCA		59	NA	
Drosophila melanogaster	50	Cp190	FBgn0000283	FBtr0083127,FBtr0083126	3	2	2	72	3R	11098710	11098793	CAGAGAATACTACTGGGCC		58	11098656	11098674	TACGACGGAATGCTAATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31303	FBgn0051303	FBtr0083047	1	1	1	139	3R	11026449	11026469	CAAGCGAAAGAATAGCAACTC		59	11026570	11026588	TATTGAGATGATTGCGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12207	FBgn0038220	FBtr0082922,FBtr0082921	2	2	3	146	3R	10116533	10124520	GCATTCGCAGTTTCAAGAG		59	10124630	10124648	ATGAGGGTCTCATTGTTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14840	FBgn0038217	FBtr0082952	3	1	1	118	3R	10086801	10086819	AACGAATGACAAGCAATGC		59	10086701	10086721	CTTTCTTCGAATTAGGTTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	140up	FBgn0010340	FBtr0082909	2	1	1	99	3R	9950700	9950718	ATTCACAGTCAACTTTGCC		58	9950557	9950575	GTACACCGACATACAAGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082803,FBtr0082807	1	2	8	80	3R	9490586	9490607	ACTAGGCAGACAATCTAAACTC		59	9490648	9491184	CCTTGAGATCTTAATGCGC		58	NA	InUTR
Drosophila melanogaster	50	CG32473	FBgn0052473	FBtr0082743,FBtr0082744,FBtr0082742	2	3	3	95	3R	9136816	9136899	GGAATTTGACGTGAAGCAG		59	9136956	9136976	GTGAGCTTATAAGTACTGCCA		59	NA	
Drosophila melanogaster	50	CG8508	FBgn0038123	FBtr0082783	1	1	1	60	3R	9011793	9011811	CTGGAGAAACCTACATGCT		58	9011751	9011770	ATTTCGGTATCGTCAATGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp313a5	FBgn0038005	FBtr0082619	1	1	1	91	3R	8059775	8059793	CTTACTCGCGGAATTTGTC		58	8059652	8059720	CCATAGTAATTTGAGCGGC		58	NA	
Drosophila melanogaster	50	CG14736	FBgn0037986	FBtr0089692,FBtr0089691	1	2	3	80	3R	7866653	7866731	CTAGGTCGTCTTAGGAAAGG		58	7866773	7866792	ATCTACTCTGTGAGTCTCGT		59	NA	
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	1	15	15	89	3R	7811197	7811279	CCCAAGAATAACATGCTTAAGC		59	7811129	7811148	CAGCTGTGTAAGATTAGCCT		59	NA	
Drosophila melanogaster	50	KP78a	FBgn0026064	FBtr0082407	3	1	1	60	3R	7175908	7175927	GATCATGAAACTGCTGAACC		59	7175867	7175885	CTCAGACTCGATGACTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6666	FBgn0037873	FBtr0082372	1	1	1	60	3R	7035091	7035111	CAAGTTTATCATCGCCTATCC		58	7035051	7035069	GAGGAGATGCCTAATACCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pug	FBgn0020385	FBtr0100144,FBtr0082266,FBtr0082264,FBtr0082265	3	4	4	152	3R	6525677	6525696	TTAAGGATTGTCCAGGTTGG		59	6525808	6525952	CAGATCGTTTATCTTATCGAGC		58	NA	
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190	3	8	8	80	3R	5954404	5954422	TCTCCAGGGATTACTTGAG		57	5954228	5954360	ATTCATGAACCGGATAGGT		58	NA	
Drosophila melanogaster	50	CG8301	FBgn0037717	FBtr0082073	3	1	1	99	3R	5410207	5410226	ATTCATCCATCTGAAGACCC		59	5410288	5410951	ATAGGATGCAAAGACCTCC		58	NA	
Drosophila melanogaster	50	ps	FBgn0026188	FBtr0082038,FBtr0111031,FBtr0111029,FBtr0111030,FBtr0082037,FBtr0111028,FBtr0111027,FBtr0082039,FBtr0111032	1	9	9	190	3R	5271436	5271454	AGAATGCCATCAACTCGAG		59	5271606	5271699	CATGGCAACCTTAATATGCTC		59	NA	
Drosophila melanogaster	50	Cenp-C	FBgn0086697	FBtr0089973	1	1	1	80	3R	4393442	4393532	ACTAAATACTACCGGTATTCGG		59	4393573	4393591	CTAGGATCCATGGTGTGAC		59	NA	
Drosophila melanogaster	50	CG14463	FBgn0037535	FBtr0081783	3	1	1	120	3R	3826193	3826211	GAGGACATAGTGCTAAACG		57	3826375	3826455	GGGATTGACTATTGAATAGGG		57	NA	
Drosophila melanogaster	50	CG18744	FBgn0042101	FBtr0114516	1	1	1	114	3R	3623180	3623198	CTCCTAATGCAAGAACCCA		59	3623022	3623103	AATTCGAAGCCAAAGATGTG		59	NA	Nonspecific
Drosophila melanogaster	50	SytIV	FBgn0028400	FBtr0081578	2	1	1	216	3R	3094842	3094923	CAAGAATGAGGTCATCGGT		59	3095103	3095121	TCACATGACTCCCATTTCG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG1939	FBgn0037469	FBtr0081638	2	1	1	60	3R	2908468	2908487	AAGATCGTCTGTGTAACCTG		59	2908581	2908599	CATTGCGGGCTATTAATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dfd	FBgn0000439	FBtr0081621	3	1	1	120	3R	2627071	2627355	GATGAATGAGTGCATTCGT		58	2627439	2627457	CTGAGATCCCGGATAAGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	lab	FBgn0002522	FBtr0081696	3	1	1	60	3R	2488345	2488363	ACTTCAATCGCTACTTGAC		57	2488303	2488321	TTAAGCTGCAACGTATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi13	FBgn0037422	FBtr0078605	1	1	1	60	3R	2118350	2118370	GATAATTCACTCTCATGCACC		58	2118392	2118410	GCTGGAGGATAAATCACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi9	FBgn0037416	FBtr0078599	1	1	1	107	3R	2086547	2086565	CAAAGACTCCATCCAGGAC		59	2087109	2087127	ATCTTCAGCTTGAAGAGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Rm62	FBgn0003261	FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653	2	6	6	155	3R	1829622	1829746	GAGGAGAAATTGAAGACCCT		59	1829486	1829504	CTTGTCACCGTGAATAGCT		59	NA	
Drosophila melanogaster	50	CG31551	FBgn0051551	FBtr0078706	1	1	1	60	3R	1456842	1456860	ATGAAGAATCAGAGCAGGG		59	1456884	1456902	GTAGAGTGTGAACTTGGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CRMP	FBgn0023023	FBtr0089685,FBtr0089686	2	2	4	85	3R	1402974	1403325	CTGGCTTATGACGATTTGC		59	1403374	1403392	GTAAAGTCACCCTTTCCGA		59	NA	
Drosophila melanogaster	50	CG16708	FBgn0037315	FBtr0078804,FBtr0078803	3	2	2	123	3R	1185797	1185815	CTCCCGTTACAGTCATCTG		59	1185264	1185711	CAAATTGCGAATATCACCAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG31538	FBgn0051538	FBtr0078819	2	1	1	60	3R	1102062	1102083	GAAGCAAATTGTAGAGTCAGTG		59	1102023	1102041	AAAGGTCCTTTGATGAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1116	FBgn0037297	FBtr0078775,FBtr0078774,FBtr0078776	3	3	3	211	3R	1045991	1046009	CAAGATCACCATTGCTACG		58	1046184	1046267	CGGTTACGTTCTTAAGGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	tacc	FBgn0026620	FBtr0089955,FBtr0089953,FBtr0089952,FBtr0089954	1	4	7	82	3R	570241	570259	AAAGTTTGGAGGTCTTCCC		59	569896	570197	TCAGTTGAGTATCCATATCGG		58	NA	
Drosophila melanogaster	50	CG11739	FBgn0037239	FBtr0078915,FBtr0078913,FBtr0078916,FBtr0078914	1	4	4	80	3R	205701	205719	TCAATCAGACATTCAACGC		58	205763	205844	AGGTAACTAGTTGCTGCTG		59	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897	2	5	15	193	3R	110111	120843	AATTAAGTGCCGTTAAAGGC		59	120999	121298	GATGTTGTACTTATCGCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG31516	FBgn0051516	FBtr0078987	3	1	1	68	3R	44920	44938	CTCAGACTCTACGACATCC		58	44870	44889	TTTAAAGACCACCGACAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Or-CD11	FBgn0086082	FBtr0114358	3	1	1	62	3L	20446836	20446854	AATGTGAAGAGCATTCCAC		58	20446879	20446898	TACGGAATAGTCAAGCACAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13239	FBgn0037197	FBtr0078548	2	1	1	125	3L	22854212	22854230	CCACCATCGCATACTATCC		59	22854318	22854337	AATAGGCTTGGTAGTACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33772	FBgn0053772	FBtr0091773	1	1	1	61	3L	22644973	22644994	GACAGAAACAATCTTCTACGTC		59	22644900	22644918	ATGTGGCCACTTGATATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ten-m	FBgn0004449	FBtr0078509,FBtr0112842	3	2	2	141	3L	22294408	22295906	CTTTAACGAAAGTCGATCAGC		59	22294287	22294305	CATTAGGTCGAACCATCCA		59	NA	
Drosophila melanogaster	50	Cpr78Cc	FBgn0037069	FBtr0078338	2	1	1	90	3L	21293911	21293929	AACTACCAATACGCCTTCG		59	21293983	21294001	AGATGTAAGAGCTGCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Edg78E	FBgn0000551	FBtr0078408	2	1	1	162	3L	21290518	21290536	ACATCTCGCTGACATACAC		59	21290374	21290393	GCTACTCCAGATTACTGCTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG10512	FBgn0037057	FBtr0078297,FBtr0078300,FBtr0078298	3	3	4	297	3L	21199477	21199495	GATGCCATTAGGAGGATCC		59	21200564	21200583	CTTCTTCTCCTTGTCTCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Paps	FBgn0020389	FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885	3	6	6	94	3L	19853426	19853508	CTAGACAGCATGGAGATCC		58	19853566	19853584	AACTCATCCTTCCTCTTGG		58	NA	
Drosophila melanogaster	50	Gyc76C	FBgn0013974	FBtr0100157,FBtr0100156,FBtr0100155	2	3	3	88	3L	19717434	19717452	ATAACTCGAACAACATGCC		58	19717244	19717382	GATGAGCTTGTACTCTGGA		58	NA	
Drosophila melanogaster	50	825-Oak	FBgn0052208	FBtr0074985	1	1	1	211	3L	19465026	19465044	AATTACAATGGAATCGCCG		58	19464833	19464851	ATGAGAAATGGTGCAGGAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	GNBP2	FBgn0040322	FBtr0075094,FBtr0075095,FBtr0075096	3	3	4	135	3L	18667370	18667389	TTCTATAGCATCAAGCCTCC		58	18667190	18667272	GTTGGAGCATCAGATAGGG		59	NA	
Drosophila melanogaster	50	CG18233	FBgn0036795	FBtr0075103	3	1	1	101	3L	18599371	18599389	TTGAAAGGCTTTGCAACAG		59	18599521	18599539	TTGTAATTGGCTATTGGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7408	FBgn0036765	FBtr0075142	3	1	1	130	3L	17873604	17873691	TAAATACGGGAATGCAGCA		59	17873785	17873803	CAAATGCCACTTTCCAAGG		59	NA	
Drosophila melanogaster	50	CycT	FBgn0025455	FBtr0075205,FBtr0075206	3	2	2	60	3L	17548446	17548464	CTGACAGATGAGTTCATCG		57	17548404	17548423	TAAGCTTAGACTTCAGACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tap	FBgn0015550	FBtr0075216	2	1	1	60	3L	17353533	17353552	GTTCAATCAACCTGGATCTG		58	17353574	17353593	GTAATCCTCTCACCACTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13723	FBgn0036705	FBtr0075213	3	1	1	60	3L	17257800	17257820	CCTGGTAATCTACTACTCCTG		58	17257842	17257860	ATATACGCAATACTGTCGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdh	FBgn0011693	FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536	2	4	4	131	3L	16346822	16346840	CATCATTCCCGTTTACGGA		59	16346645	16346663	ATGTCCGTCATTGTAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13062	FBgn0036603	FBtr0075368	2	1	1	102	3L	16307572	16307713	AGTTGAAAGTAGTGTCGCT		58	16307778	16307797	GGATAGTAAGGGATTTCCGG		59	NA	
Drosophila melanogaster	50	CG13049	FBgn0036592	FBtr0075476	2	1	2	80	3L	16275061	16275079	GATATTCCGTGGGCTACAG		59	16274999	16275017	TTAGCTTGAAGGCAGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf4	FBgn0010280	FBtr0075450,FBtr0075451	3	2	5	112	3L	16108920	16110652	AGAGTCCATCGTCTATGAC		57	16110728	16110746	ATTTAGTTGCGTCAGATGC		58	NA	
Drosophila melanogaster	50	Notum	FBgn0044028	FBtr0075436,FBtr0075435	3	2	2	84	3L	16023316	16023335	GGATACCGACTATATCCCAC		58	16023445	16023464	CATTATCCACTCGCATTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	HGTX	FBgn0040318	FBtr0114619,FBtr0075720	2	2	2	94	3L	14577188	14583109	CAGGTTAAGGTCTGGTTCC		59	14577112	14577130	CCCATATCGTCCTGTTTCC		59	NA	
Drosophila melanogaster	50	CG9238	FBgn0036428	FBtr0075724	1	1	2	80	3L	14543149	14543167	TATTCAGTCACAGTCCACC		58	14540572	14543105	CGTCATTGTAGTTCAACGA		57	NA	
Drosophila melanogaster	50	CG10724	FBgn0036357	FBtr0075845,FBtr0075846	3	2	2	62	3L	13409019	13409104	TCATCAAGAATGCCCATCC		59	13409130	13409148	CAGTGTTATTGTCCAGCCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14113	FBgn0040814	FBtr0075837	2	1	1	60	3L	13322463	13322482	TATGCACTCAGATATGTCCG		59	13322505	13322523	CCATAACCTGATCGCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34032	FBgn0054032	FBtr0100087	2	1	1	61	3L	12883540	12883558	ACAATGTGGAACCTATCCG		59	12883651	12883669	TGTCGATGATGAAATCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10663	FBgn0036287	FBtr0113167,FBtr0113168,FBtr0075977	3	3	3	97	3L	12469620	12469638	GATGGAATAGCTCTCAGGC		59	12469321	12469560	CGGCATTTCTTGTATCTCCT		59	NA	
Drosophila melanogaster	50	Pbgs	FBgn0036271	FBtr0076011	1	1	1	60	3L	12263810	12263828	AGATGAACAGTGTATCCCT		57	12263768	12263788	GGTCCATAGAAATTGGATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17153	FBgn0036248	FBtr0075992	3	1	1	124	3L	12111945	12111963	TGAAGTCACTGGGTTTCAC		59	12112111	12112129	CTCGAAGTATTCCCACTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18815	FBgn0042138	FBtr0076105,FBtr0076104,FBtr0076103	1	3	3	80	3L	11622535	11622553	GAATGTGACGTTCAAGACG		59	11622597	11622691	CTGATGATGTCCTTGACGT		59	NA	
Drosophila melanogaster	50	nudE	FBgn0036059	FBtr0113158,FBtr0113159	2	2	4	96	3L	9894107	9894450	ATTCGCTTAAGAATCCCGAG		59	9894509	9894527	TTTCTTAACATGTCGGCCA		59	NA	
Drosophila melanogaster	50	CG10809	FBgn0036052	FBtr0076366	3	1	1	299	3L	9851661	9851680	CTCATCTTACGCTACATGGT		59	9851107	9851125	CTTGTCACAATGCCAACTC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	I-2	FBgn0028429	FBtr0112935,FBtr0076370	3	2	2	72	3L	9829169	9829188	TACTAAAGACTTCGCGTAGC		59	9829048	9829066	TTCAGCTCATCGAACTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326	1	11	11	88	3L	9773789	9773875	CCTCATGAGATCTTTGTGC		58	9773927	9773945	TCATACTTGATCCAACGGG		59	NA	
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323	2	4	11	114	3L	9774994	9775718	CTACCTGGGTAATTTGTCTG		57	9775795	9775813	CATATCGTCCTTCATGTCG		57	NA	
Drosophila melanogaster	50	CG3280	FBgn0036017	FBtr0076381	3	1	1	80	3L	9600542	9600563	GATACTGGTCAATATACTGGTG		57	9600603	9600768	TCCTCAGAGTGATTAACCAG		58	NA	
Drosophila melanogaster	50	CG32037	FBgn0052037	FBtr0076469	3	1	1	128	3L	9484668	9484686	GTGGTAAGATACCCGACAC		59	9483900	9484577	TGTAGTACTGATACACCTGC		58	NA	
Drosophila melanogaster	50	CG32036	FBgn0052036	FBtr0114525	3	1	1	83	3L	9481436	9481454	CGATTGGTGGTACAATGTC		58	9481311	9481329	GGAATGTAGGGATTGTGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	eIF-4E	FBgn0015218	FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487	1	7	7	92	3L	9393610	9393692	AGAACATTCGTCCCATGTG		59	9393536	9393554	TATCCAGATCGGTCTTGGA		59	NA	
Drosophila melanogaster	50	PGRP-LA	FBgn0035975	FBtr0076434,FBtr0076432,FBtr0076435,FBtr0076433	2	4	4	148	3L	9330628	9330646	CATTACCTTTATGGGCGAC		58	9330758	9330841	TTCTGGTCACCTTAGTCTG		58	NA	
Drosophila melanogaster	50	Argk	FBgn0000116	FBtr0112792	2	1	6	108	3L	9043450	9044238	AGGAGATGGCAAACAAGAC		59	9043360	9043378	GTACTTCTTCAACAGCGAC		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG6902	FBgn0035899	FBtr0076657	3	1	1	61	3L	8484483	8484502	CTCTGTGCGTGTTATTTGAC		59	8484441	8484459	TCTCGCAGACATGATATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13670	FBgn0035873	FBtr0076708	2	1	1	61	3L	8315232	8315250	GAAGGATATGTCGAGGCAG		59	8315275	8315293	TAGTAGTCCTCGTCACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGEF4	FBgn0035761	FBtr0076886,FBtr0076885	3	2	2	146	3L	7314973	7315051	GCAAATGCGAATATGATACG		57	7314846	7314864	CCTTTCCCATTGGATTTCC		58	NA	
Drosophila melanogaster	50	CG13300	FBgn0035699	FBtr0077007	2	1	1	64	3L	6325905	6325923	TATCTGTGTCCATATCCGC		58	6325859	6325877	AGTAGGAAATTCGGATGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or65b	FBgn0041624	FBtr0077005	1	1	1	98	3L	6319956	6319974	CTCTGCGTAATAATCAGGC		58	6320036	6320107	TTGGTTAAGTATAGCGCTG		57	NA	
Drosophila melanogaster	50	Trn	FBgn0024921	FBtr0077002,FBtr0077000,FBtr0077001	1	3	3	107	3L	6190650	6190724	TACAGAAGATTCTGCACGG		59	6190795	6190813	TATACATTGTGGTCAGGCG		59	NA	
Drosophila melanogaster	50	PGRP-LD	FBgn0035635	FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577	2	4	4	107	3L	5775936	5776021	TGCATAAGCTGGAAAGGTC		59	5776092	5776110	GATACTGGCTCCGATAGTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG4611	FBgn0035591	FBtr0077165	3	1	1	60	3L	5130653	5130671	CAGCTGCTAGAAAGAAACC		58	5130695	5130713	CTGGGTAAATCATCTTGCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11347	FBgn0035542	FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141	2	6	6	226	3L	4419447	4419465	TATTAGGTCCACCCAGGAG		59	4419654	4419749	TGTTCTTGCTCTTCTGACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15019	FBgn0035541	FBtr0073335,FBtr0113139	1	2	2	60	3L	4405574	4405593	AGGAATTGATCTACGAGCAC		59	4405533	4405552	TTGGTCACCTTGACTTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32240	FBgn0052240	FBtr0073336	1	1	1	171	3L	4381221	4381239	AGAACTGAATCAGTGCGAC		59	4381005	4381024	TGTGTTCTATAAAGGGTCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15014	FBgn0035532	FBtr0073340	2	1	1	60	3L	4321295	4321313	CAATGGCAACGATAAGGAG		58	4321253	4321272	CTCATCGTCATTAGACTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0110922,FBtr0073132,FBtr0073135,FBtr0110924,FBtr0073131,FBtr0073134,FBtr0110923,FBtr0110920,FBtr0110925,FBtr0073133,FBtr0110921	2	11	11	118	3L	3552857	3578300	CAGATTAACAATTTCCCGCG		59	3578378	3578399	CGTTGTATGGAACTTTGTTACC		59	NA	
Drosophila melanogaster	50	kst	FBgn0004167	FBtr0112840,FBtr0073070,FBtr0073072,FBtr0073071	3	4	4	80	3L	3365741	3365818	AGTCCATGAAGCAACAGTC		59	3365860	3365880	AGTTACGAGAACTAACTGGTG		59	NA	
Drosophila melanogaster	50	CG14968	FBgn0035431	FBtr0073087,FBtr0073089,FBtr0073088,FBtr0073086	1	4	5	80	3L	3300774	3300792	CTCCAACAACAGTAGTACC		57	3300037	3300730	ATGTACTTCACCTTGAACG		57	NA	Nonspecific
Drosophila melanogaster	50	CG14959	FBgn0035427	FBtr0073050	1	1	3	163	3L	3267257	3267275	CTTCTATGCCGACATGGAG		59	3267539	3267618	AGAACCATTTGGGTGACTC		59	NA	
Drosophila melanogaster	50	Cyp4d20	FBgn0035344	FBtr0072967	2	1	1	105	3L	2477510	2477704	TTGACGTGATAACAGAGGC		59	2477361	2477379	TCCGGTTGGATATAGACCA		59	NA	
Drosophila melanogaster	50	CG13800	FBgn0035338	FBtr0072891	3	1	1	60	3L	2406755	2406776	CTTGATGTTACTACTAGCACCT		59	2406796	2406815	TATCGTTAGAGGTTGGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9018	FBgn0035318	FBtr0072910,FBtr0072909	2	2	2	223	3L	2236218	2236236	CTACTTGCCTTTGGGAGAG		59	2235936	2235954	CATTGTAGTCGTTCAGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	sls	FBgn0086906	FBtr0072848,FBtr0072849	3	2	2	102	3L	2091321	2091339	AGTTTAAGACGACGGTGAC		59	2091119	2091256	TCGAAGATCATCTGGAAGTC		58	NA	
Drosophila melanogaster	50	Patj	FBgn0067864	FBtr0072781,FBtr0072780,FBtr0072779	1	3	3	111	3L	1800627	1800645	AGTAAGGGACTCCCTAGAC		58	1800780	1800798	GTAGTACTTGTGACGGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12104	FBgn0035238	FBtr0072825	1	1	1	62	3L	1601689	1601708	CAAATGCAAGTGATAGTGCA		59	1601646	1601664	ATAGACGTTCTTCTGCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SA-2	FBgn0043865	FBtr0113348,FBtr0072715	3	2	2	146	3L	1434913	1434995	TACGTAAAGTACCACGCTC		59	1434785	1434803	ATGACGAGTATCATCTGGG		58	NA	
Drosophila melanogaster	50	CG13914	FBgn0035209	FBtr0072678	1	1	1	84	3L	1332008	1332026	AAGATGTACAACCTCAGGC		59	1332074	1332092	GGTCACTGCTAGACATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rac1	FBgn0010333	FBtr0072730	1	1	1	144	3L	1301873	1301891	CAAGTATCTGGAGTGCTCG		59	1301747	1301765	CCGACCAACTGTCTAACTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13908	FBgn0035178	FBtr0072618,FBtr0113121	1	2	2	60	3L	989203	989221	GAATGTATGCCAGGATCCC		59	989243	989263	ACGTCTTACCATAATCTCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	uzip	FBgn0004055	FBtr0072397	2	1	1	102	2R	20915916	20915934	TTTAGTCGAAACAGAGCCC		59	20915997	20916075	CTTCCTAGTAACCAGTTCAGTC		59	NA	
Drosophila melanogaster	50	Phk-3	FBgn0035089	FBtr0072404	2	1	1	60	2R	20858731	20858749	AAGTACGACAGTGTCAACG		59	20858689	20858708	GATAATTACCCAACACTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34413	FBgn0085442	FBtr0112685,FBtr0112684,FBtr0112683,FBtr0112686	2	4	4	80	2R	20770531	20770606	TTCCTGCAAGTGATAACGA		58	20770649	20770668	AAAGTTCACTAGGATAGGCG		59	NA	
Drosophila melanogaster	50	CG33228	FBgn0053228	FBtr0072331	1	1	1	68	2R	20556281	20556299	TCGCCAAATATCCACTGAG		59	20556175	20556193	GTAGTTGGGACCCATAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11406	FBgn0034990	FBtr0100169,FBtr0072276	3	2	2	105	2R	20090339	20093348	TATCCATTGGATCGTAGCA		57	20090092	20090270	ATTTGCCGCTATTGATGAG		58	NA	
Drosophila melanogaster	50	CG4324	FBgn0034956	FBtr0114534,FBtr0072197	3	2	2	117	2R	19903819	19903840	AGTACTACTAGTGCTGTATAGC		58	19903663	19903741	CAAGGTAACTGACTGTGGA		58	NA	
Drosophila melanogaster	50	CG5594	FBgn0025698	FBtr0072137,FBtr0072136	2	2	4	98	2R	19797272	19797290	TACAACCAGGATGAGTCTG		58	19797351	19799213	GATATCACCTGAGTCATCGT		58	NA	
Drosophila melanogaster	50	shu	FBgn0003401	FBtr0072237	1	1	1	100	2R	19729909	19729927	TGAGCTCACTGAACTACTG		58	19729752	19729771	GTTGTAAACGATCATCAGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	alphaPS5	FBgn0034880	FBtr0072063	1	1	1	80	2R	19447455	19447474	TTGGTACATCATTCTGTCCC		59	19447516	19447587	AAGAACCGAAGCTTGTAGAG		59	NA	
Drosophila melanogaster	50	CG30412	FBgn0050412	FBtr0072044,FBtr0072043	3	2	2	76	2R	19206418	19206436	TTTACGGACTTCGTAAGGC		59	19206360	19206378	TTGATCTGCTTGAAACCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30190	FBgn0050190	FBtr0071950	3	1	3	145	2R	18817594	18817731	CAACTACAACATTCGCAGC		59	18817840	18817927	TCATCTCTTCCAGCAACTC		58	NA	
Drosophila melanogaster	50	CG30275	FBgn0050275	FBtr0071876	2	1	4	80	2R	18597711	18597732	TCTGATATTTAGGGATTTGGCC		59	18597772	18597841	CTGTACTTATAGCCGTCGAC		59	NA	
Drosophila melanogaster	50	CG9304	FBgn0034674	FBtr0071726	3	1	1	110	2R	17862232	17862251	GTGTTCCTTTACATCTGGGA		59	17862377	17862459	CATCATAAAGGAGGTGCGT		59	NA	
Drosophila melanogaster	50	Tbp	FBgn0003687	FBtr0071679	2	1	1	68	2R	17574353	17574371	AAATAGCATTGCATGCGAG		59	17574303	17574321	GGATTCGCATAATCACAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10306	FBgn0034654	FBtr0071670	3	1	1	78	2R	17573048	17573066	GTCCTATGTGCAGGATCAG		59	17573108	17573126	GAACTGGTACAGTTTCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30222	FBgn0050222	FBtr0071655,FBtr0071656	3	2	2	104	2R	17470719	17470737	CTTAGACGCTTTGATGAGC		58	17471237	17471312	ATCGAAGTCAGTGATTCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	cv-2	FBgn0000395	FBtr0071610	2	1	1	71	2R	17251241	17251259	AAGTCCAACTGAAGAACCA		58	17246674	17251206	AATTCACGAATCCGTTCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG12484	FBgn0086604	FBtr0112775,FBtr0112776	1	2	3	88	2R	16359763	16359781	TACACTCATTCCCGTTAGC		59	16359833	16361278	AACTGAGCTCAGTCTTCTG		58	NA	
Drosophila melanogaster	50	CG8920	FBgn0027529	FBtr0086280,FBtr0086281,FBtr0086279	1	3	3	92	2R	16211678	16211696	TCATATGCTTCATCGCCTG		59	16211820	16211838	TTTACCAGAGGCTTACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11099	FBgn0034485	FBtr0086315	2	1	1	66	2R	16125484	16125504	TCGTACTACTTCATGGTTGTG		59	16125786	16125804	AGAAGTTGCAGGTGAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	hrg	FBgn0015949	FBtr0111010,FBtr0086484,FBtr0086483	3	3	3	89	2R	15554704	15554782	AAGATTTCAAGTCTGGGATCC		59	15554635	15554654	GAATTCTGTTGTGGGTATGC		59	NA	
Drosophila melanogaster	50	Spt5	FBgn0040273	FBtr0086531,FBtr0086532	3	2	2	81	2R	15328659	15328736	TGGATACAATCCAAGTACCC		58	15328780	15328798	GTCCGATCCATACAGAGTG		59	NA	
Drosophila melanogaster	50	CG10737	FBgn0034420	FBtr0086588,FBtr0086585,FBtr0086586	3	3	5	80	2R	15064177	15064195	GATTAGTCACAAGCAGTGC		58	15064238	15064454	AATGACGTTAGTTCCATGGA		59	NA	
Drosophila melanogaster	50	CG15116	FBgn0034415	FBtr0086596	2	1	1	60	2R	14943007	14943025	AGGAAATGTTGGATCACCT		58	14942965	14942983	ATCTTGGCAAAGAGGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15100	FBgn0034401	FBtr0086627	2	1	1	108	2R	14735331	14735409	CTCAATGCTGAGAAACCAC		58	14735241	14735259	TAAGTTCGTCGATGAAGGA		58	NA	
Drosophila melanogaster	50	l(2)03709	FBgn0010551	FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616	2	6	6	192	2R	14707870	14707888	GATGATCAACATCTCGCTG		58	14708044	14708124	GATGAGTAGGGATACCTGC		58	NA	
Drosophila melanogaster	50	CG5757	FBgn0034299	FBtr0086787	1	1	1	118	2R	13981761	13981779	TTTGATTGGTGCTATGCTC		58	13981596	13981679	TTCTCATAACGCTCTTTGC		58	NA	
Drosophila melanogaster	50	CG14482	FBgn0034245	FBtr0086905	2	1	1	61	2R	13459966	13459984	TGCTTTACTACACCGACTG		59	13459923	13459942	GAACTTGGATCCGTAGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4844	FBgn0061354	FBtr0100122	3	1	2	217	2R	13394200	13394218	AATCCGATTTCGATTCCCA		59	13395097	13395115	AATCATCGATCAGTCGGTG		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	mbl	FBgn0053197	FBtr0086992	3	1	4	149	2R	13239671	13239689	CGTACAGTCCGTACTACAC		59	13239801	13246820	GAGGTGAGGTCTCTAATCTG		58	NA	
Drosophila melanogaster	50	CG30460	FBgn0050460	FBtr0087011,FBtr0087010,FBtr0113378	2	3	5	93	2R	12959002	12959242	CACAGTGATAACACTCAAGC		58	12958928	12958946	ACAGGTTCACTTGGTTCTG		59	NA	
Drosophila melanogaster	50	unc-104	FBgn0034155	FBtr0113088,FBtr0113087,FBtr0087079,FBtr0113089	2	4	4	80	2R	12650303	12650322	CCATGATATGCAAGGATCTG		58	12650186	12650261	TATAGGAAACCTCAACCGAG		58	NA	
Drosophila melanogaster	50	Nach	FBgn0024319	FBtr0089587,FBtr0089588,FBtr0087116	2	3	3	84	2R	12541208	12541228	GTGAACACATTGATTACGACG		59	12541078	12541164	AAGCCCGAATAGAACTTATCG		59	NA	
Drosophila melanogaster	50	CG7848	FBgn0034127	FBtr0087160	3	1	1	60	2R	12322919	12322938	TTACCAATAACGTGCAACAG		58	12322878	12322896	AATCGCCTATTTCGACGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30095	FBgn0050095	FBtr0087224	1	1	1	147	2R	12011642	12011660	CATGAAATACCGGGTTGAC		58	12011833	12011851	TTCCACTTCAACATCTGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Rho1	FBgn0014020	FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216	2	7	7	82	2R	11993293	11993373	CACAATTCGGGATCTAGCA		59	11993419	11993437	AGGCATTAATCTTCTCGGC		59	NA	
Drosophila melanogaster	50	Flo	FBgn0024754	FBtr0087352,FBtr0087351	1	2	2	201	2R	11454666	11454755	CTGAATCGATCAGGATTCGT		59	11454423	11454441	ATCGTGATCTTCTTAGCCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	Arf51F	FBgn0013750	FBtr0087377,FBtr0087375,FBtr0087379,FBtr0087376,FBtr0087378	1	5	5	90	2R	11211571	11211592	GAGCTGCATAGGATAATTAACG		59	11211643	11211715	GTTTCATTGCATCAGGCAG		59	NA	
Drosophila melanogaster	50	alphaPS4	FBgn0034005	FBtr0087371	2	1	1	81	2R	11148510	11148530	CTAAATTTACACCCATAGCCC		58	11148573	11148650	CAATCCTCGCAGAAATCTC		58	NA	
Drosophila melanogaster	50	CG8092	FBgn0033998	FBtr0087402	1	1	2	80	2R	11098564	11099091	CTCAAGAAACCTATCAACGA		57	11098503	11098522	TGATGCTATATCACGATCCT		57	NA	
Drosophila melanogaster	50	CG17034	FBgn0033837	FBtr0087707	2	1	4	80	2R	9310224	9326124	CTCCTGAATACCTATGACGA		58	9310163	9310183	TAGGTTTATGATACGCCTCTC		58	NA	
Drosophila melanogaster	50	CG33470	FBgn0053470	FBtr0087657,FBtr0087656	1	2	2	65	2R	9299575	9299593	CAACACGTTTGTTAACCGA		58	9299681	9299699	AAATTGGGACCACTGATGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	TppII	FBgn0020370	FBtr0087775,FBtr0087774	1	2	2	80	2R	9042478	9042562	TTAAAGTTAAGTCTGGCAGG		57	9042417	9042435	TGTACTTCAGGTGACTCTG		58	NA	
Drosophila melanogaster	50	Roc2	FBgn0044020	FBtr0088085	2	1	1	208	2R	7565899	7565917	AATCTCATTAGCCCAGTGG		59	7540587	7565727	ATCCATAACTTGAACACGG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG11883	FBgn0033538	FBtr0088284,FBtr0113063,FBtr0088283	1	3	3	90	2R	6527408	6527427	AATCATACAAGTTGTGCGTC		58	6527480	6527561	TCATCATCCATCAGCACAG		59	NA	
Drosophila melanogaster	50	egr	FBgn0033483	FBtr0088405	3	1	2	106	2R	5970831	5970927	GGTGAATCTCTTCTTTCAGC		58	5970996	5971094	ATATCTCCATGGTAGCCCA		59	NA	
Drosophila melanogaster	50	CG12134	FBgn0033471	FBtr0088388	3	1	2	258	2R	5859780	5859798	ATTTCAAGAGCTACGAGTG		57	5860077	5860095	CTATCTCTGACGATCTGCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	2	9	9	91	2R	5738884	5738970	GAAGCCGTTAAGGAGATCC		59	5738811	5738829	ATATCGATGACAGTTCCGG		58	NA	
Drosophila melanogaster	50	Map60	FBgn0010342	FBtr0088530	1	1	1	60	2R	5479668	5479687	GAATGACATTATCTTCGGGC		58	5479709	5479728	GATAATCTCGGGTGTATTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1968	FBgn0033401	FBtr0088595,FBtr0088596	2	2	2	210	2R	5175120	5175193	CGGTGCTATTCAAATACGT		57	5175367	5175385	AGCAAAGATAGGTTCTCCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG8172	FBgn0033362	FBtr0088667,FBtr0113057	1	2	3	90	2R	4898800	4898818	CATGATCTGGTCTTGTTGC		58	4896716	4898746	GTGTATTATGTCGCTCGTG		58	NA	
Drosophila melanogaster	50	CG14743	FBgn0033326	FBtr0088722	1	1	1	80	2R	4598789	4598966	CTAGTTGAGACTATGCTGGTG		59	4598729	4598748	CAGTAGTGACCATATTGCCA		59	NA	
Drosophila melanogaster	50	CG11508	FBgn0033267	FBtr0088817,FBtr0114490,FBtr0088818	1	3	3	60	2R	4017216	4017234	CAGTACGTTTAATCGCAGG		58	4017174	4017192	CACGATGAAGCTATAGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11508	FBgn0033267	FBtr0088817,FBtr0114490,FBtr0088818	2	3	3	60	2R	4017214	4017232	GTACGTTTAATCGCAGGAC		58	4017172	4017192	TTCACGATGAAGCTATAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1941	FBgn0033214	FBtr0088927	2	1	1	123	2R	3598911	3598989	ATTAGGACAGGGTCTTCGA		59	3599073	3599094	CCGTTATCCTCTTTACAAAGTC		58	NA	
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012	2	6	7	107	2R	3293620	3293715	CAAATATGACTTCAAGCCAGC		59	3287508	3293552	CCGGAACTTTCAGAATTTGG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111058	3	1	60	87	2R	3230525	3230544	AATTCCGGAAACTATAGCTG		57	3219874	3230475	ATCTGGGAGGTACATTGAC		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111066,FBtr0111071	2	2	60	82	2R	3249270	3249288	GAACCAAACATCGTCTGAC		58	3237002	3249225	TACACTACCAATGGGTTCTG		59	NA	
Drosophila melanogaster	50	Tsp42Eq	FBgn0033138	FBtr0089060	1	1	1	83	2R	2950524	2950542	CAACGAGACCATTTACGAC		58	2950276	2950478	CAGCAGTGATACTTGATCTC		57	NA	
Drosophila melanogaster	50	Tsp42Ei	FBgn0033130	FBtr0089028	1	1	1	113	2R	2923846	2923864	TCGTGAAGTATCTGGACGA		59	2923998	2924016	TCTTTACGCTGCTGTAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3403	FBgn0033094	FBtr0086141	1	1	1	87	2R	2583397	2583415	ACAAGTACTTCCCTAGCAG		58	2583268	2583286	GAGAAGATGCGATACACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7843	FBgn0033062	FBtr0086021,FBtr0086020,FBtr0086018	2	3	3	166	2R	1969443	1969461	CTCTAAGCGTCCAGAATCG		59	1968904	1969243	GTTCCAAAGGCAATTCTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14471	FBgn0033049	FBtr0085970	1	1	1	60	2R	1885598	1885616	ACACCTATATCCTGATGCC		58	1885640	1885658	TTCACTACACCTGCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Src42A	FBgn0004603	FBtr0085968,FBtr0085967	2	2	2	81	2R	1896789	1896807	TACGGTTAAGCATTATCGC		57	1896852	1896937	CTGAAGGGTTCTGAATGTC		57	NA	
Drosophila melanogaster	50	CG34200	FBgn0085229	FBtr0112393	3	1	1	168	2R	1645270	1645289	TGGTAAAGTCTTCAAATCCC		57	1645505	1645523	TGGTAGTACTCTTAGGCTG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	snRNA:U3:22A	FBgn0003926	FBtr0077928	2	1	1	184	2L	1432724	1432742	GTATCATCCTTCTCACCGG		59	1432890	1432908	TAGCAGAACACCAGAAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycK	FBgn0025674	FBtr0085942,FBtr0085941	3	2	2	60	2L	22129323	22129341	TGCAGACCATCAAATTCGA		59	22129281	22129300	GCGTACTTTAGGAGAAAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cul-2	FBgn0032956	FBtr0085900,FBtr0085899	2	2	2	88	2L	21661187	21661352	TCAATCGTTTGAAGCAAGC		59	21661402	21661422	GTTCAGATCTACTGATACCGA		58	NA	
Drosophila melanogaster	50	CG9270	FBgn0032908	FBtr0081436,FBtr0081435	2	2	2	91	2L	20930076	20930152	CTTAGAAGAGGTGCACCTC		59	20930003	20930022	CTACACTGTAGTTGGATCCG		59	NA	
Drosophila melanogaster	50	CheB38c	FBgn0032888	FBtr0081452	2	1	1	85	2L	20820404	20820422	GATCCAAGAGAAGTGCCTC		59	20820276	20820295	CCAACACGTTATTTAGTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9323	FBgn0032883	FBtr0081459	1	1	1	83	2L	20754742	20754818	AGTTGATCAAAGCCATCGA		59	20754677	20754695	TGTCATCGATTTCATCGGA		58	NA	Nonspecific
Drosophila melanogaster	50	CG1962	FBgn0032876	FBtr0081399,FBtr0081400,FBtr0081401	2	3	3	60	2L	20680493	20680512	TAGTGGTGCGGATTATAAGG		58	20680452	20680470	GCTAGAGTTGGGATTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1962	FBgn0032876	FBtr0081399,FBtr0081400,FBtr0081401	3	3	3	60	2L	20680493	20680511	AGTGGTGCGGATTATAAGG		59	20680451	20680469	CGCTAGAGTTGGGATTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15130	FBgn0032860	FBtr0081366	1	1	1	61	2L	20424459	20424477	CATAGCTGTAGCTTCGGTC		59	20424416	20424434	ATACCATAATCACTGCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rtGEF	FBgn0015803	FBtr0081357,FBtr0112885,FBtr0081356,FBtr0112884	1	4	4	80	2L	20355990	20356089	ATACTGGATAAGTACAAGGACG		59	20356130	20356148	CGTGAGCACAAGTAATCCA		59	NA	
Drosophila melanogaster	50	spir	FBgn0003475	FBtr0081355,FBtr0081353,FBtr0081352	1	3	4	188	2L	20346236	20346319	TATACCAAGATGCGAATTCCC		59	20346469	20346487	AAGACGCTCTATCAACGAC		59	NA	
Drosophila melanogaster	50	CG10462	FBgn0032815	FBtr0100351,FBtr0100352,FBtr0081325	2	3	3	91	2L	19733222	19733240	GACAAACGTTTCCGAACTC		59	19733056	19733168	TCTAACGAGCATATCTTGCA		58	NA	
Drosophila melanogaster	50	CG13077	FBgn0032810	FBtr0081257	3	1	1	292	2L	19566370	19566391	TATATTTCCTATCTCACGCTGC		59	19566995	19567013	AGAATGCACAGTACGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10195	FBgn0032787	FBtr0081286	3	1	1	124	2L	19483516	19483534	CGTATCAATCCCTGTTGGA		59	19483346	19483429	AACATAGAAGTCATCGCCAG		59	NA	
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0081213,FBtr0081212,FBtr0081210	3	3	6	179	2L	19410626	19416414	GATGCTCTATTAGCCGACC		59	19410399	19410484	GTAGTGCTCTTGATACACCT		58	NA	
Drosophila melanogaster	50	CG10702	FBgn0032752	FBtr0081175,FBtr0081176,FBtr0081174	2	3	3	81	2L	19067507	19067579	AAGGACAAGTACGTCATGG		59	19067444	19067462	CGGAAATAACATAGCCGTG		58	NA	
Drosophila melanogaster	50	CG31752	FBgn0051752	FBtr0081119	1	1	1	60	2L	18840042	18840060	CGCATGTATCTGAACACTC		58	18840000	18840019	GGACCGTAACTAGATACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17322	FBgn0027070	FBtr0081107,FBtr0081105,FBtr0081108,FBtr0081106	2	4	4	127	2L	18827246	18827517	CTATTAGCTTAGAGGACTTCGA		58	18827605	18827623	GATCTCAGTTAGGGCTCTG		58	NA	
Drosophila melanogaster	50	ham	FBgn0045852	FBtr0081123	2	1	1	87	2L	18776364	18776479	CTGGTTATCTGTGGTACGA		58	18776295	18776313	AGTTGAACAGGACTCTTGG		59	NA	
Drosophila melanogaster	50	Faf	FBgn0025608	FBtr0081126	1	1	1	80	2L	18706847	18706865	GCAGTTGTATTCAAGCTGC		59	18706728	18706803	GTGATAAACGTCAAGCACC		59	NA	Nonspecific
Drosophila melanogaster	50	CG15149	FBgn0032659	FBtr0081027	2	1	1	60	2L	18008646	18008665	CGTGGTACAAAGTATTGGAG		58	18008687	18008706	AAACTTAGGAAGCAATGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6870	FBgn0032652	FBtr0080989	3	1	1	65	2L	17591903	17591921	ATAGGGTCTACGATGTGAC		57	17591856	17591874	GATCCATAATGACGTCGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31739	FBgn0051739	FBtr0080919	3	1	1	164	2L	16827876	16828057	AAATCCTTTCAACATGGGTG		58	16828182	16828202	GACAGCTCAACAAATAATCCG		59	NA	
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080898,FBtr0080903,FBtr0080900	3	3	13	99	2L	16779120	16779138	CAAGGGTATTGAGGATCCC		59	16779199	16780558	GAAGAACACCTTTGTGTTACC		59	NA	
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080903,FBtr0080902,FBtr0080899	1	3	13	95	2L	16774778	16774797	GTAACGAGACTCTGGATACC		58	16774855	16776278	GTTCGAAACCGTTGTACTC		58	NA	
Drosophila melanogaster	50	trpgamma	FBgn0032593	FBtr0080946,FBtr0080945,FBtr0114470	1	3	3	80	2L	16665213	16665232	CGAGCAAGAATATTTGTCCG		59	16665101	16665173	GCTTAAGGGTCTTATCATTCAG		58	NA	
Drosophila melanogaster	50	CG13258	FBgn0032582	FBtr0080853	3	1	1	75	2L	16292364	16292382	GATATGCCAACTGATGTCC		57	16292307	16292326	CGATGACTCCAGATAATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gli	FBgn0001987	FBtr0080769,FBtr0080765,FBtr0080768,FBtr0080767	1	4	5	80	2L	15760339	15760416	CGATCCGGATTACAGAACC		59	15760277	15760295	GGATAGTTGGCTCCATAGC		59	NA	
Drosophila melanogaster	50	Gli	FBgn0001987	FBtr0080769,FBtr0080765,FBtr0080768,FBtr0080767	1	4	5	80	2L	15760339	15760416	CGATCCGGATTACAGAACC		59	15760277	15760295	GGATAGTTGGCTCCATAGC		59	NA	
Drosophila melanogaster	50	CG9263	FBgn0032530	FBtr0080515	2	1	1	61	2L	13542197	13542215	ATTGGTACGGATGGATGTC		59	13541966	13541984	GATCTCAACATCGTCTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16956	FBgn0032523	FBtr0080520	3	1	1	60	2L	13413924	13413943	GTACCACGACATCATTACCA		59	13413883	13413901	TAAACCAACTCATGTGTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6523	FBgn0032509	FBtr0080465	2	1	1	100	2L	13366990	13367008	GATATTCATGAAGGGCGAC		58	13367135	13367153	TGTCAAATGTCTCGTACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9377	FBgn0032507	FBtr0080474	3	1	1	61	2L	13360380	13360398	GCTGGCTCCTAATGTACAG		59	13360337	13360358	GGCTGTAGTTGTACATTATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5705	FBgn0032486	FBtr0080444	2	1	1	60	2L	13221164	13221185	AGTGGACTAATAGAGAAGTTGC		59	13221206	13221224	CCAAGAGCTCCTTTAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bun	FBgn0010460	FBtr0111002	3	1	6	158	2L	12491764	12491782	TGAATCCCTATCAAACGCC		59	12458211	12477120	ACTTGACCAGATCCATTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14945	FBgn0032402	FBtr0080295,FBtr0080294	2	2	2	162	2L	12051362	12051381	GTCAATGACTTCGATGTGTC		58	12051574	12051595	CCAGTTCATTTCGATACAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rh5	FBgn0014019	FBtr0080291	3	1	1	73	2L	12009054	12009072	TGCCATTGTTCCAGATCTG		59	12009159	12009177	GGTCAGGTAATCGAAGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32830	FBgn0052830	FBtr0080205	2	1	1	63	2L	11255924	11255943	ATTTCCTTGACCATGAAGAG		57	11255969	11255987	TGAGTAGCGTTTGGTAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33129	FBgn0053129	FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172	2	4	4	117	2L	10966083	10966101	GATCAAGACCACCTGTGAC		59	10965902	10966002	TTGGTCAATGAACTTTGCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Myo31DF	FBgn0086347	FBtr0080035,FBtr0080036	2	2	2	101	2L	10494501	10494520	TGGATATTTACGGCTTCGAG		59	10494359	10494440	GCACCAGTTCTATGAATAACTG		59	NA	
Drosophila melanogaster	50	CG5188	FBgn0032247	FBtr0080024	1	1	1	66	2L	10429617	10429635	ATCGGTAGCTATTTCCACG		59	10429720	10429738	GCATCTTTCCAGGAATCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31718	FBgn0051718	FBtr0080015	2	1	1	119	2L	10407547	10407565	AACGAGATCTGTGATCTGC		59	10407648	10407861	CTGGGCATTACACATAGCT		59	NA	
Drosophila melanogaster	50	CG5640	FBgn0032207	FBtr0080075	2	1	3	98	2L	10277916	10278259	TACTCCGAAGCTTTATCAGC		59	10277837	10277855	ATAAGCAACGCCTATTCCA		59	NA	
Drosophila melanogaster	50	Eaat1	FBgn0026439	FBtr0079802,FBtr0079801,FBtr0079800	3	3	3	147	2L	9338300	9338321	AGATCATGTACATATCCTTCCC		58	9338514	9338599	TAAGTAATGGCTCTGGTAGC		58	NA	
Drosophila melanogaster	50	CG32984	FBgn0052984	FBtr0079758	3	1	1	110	2L	8965699	8965781	ATGGGCTATAATAAGGTAGCTG		59	8965852	8965870	TCCTGGTTGAGTTGTATCG		58	NA	
Drosophila melanogaster	50	d	FBgn0086896	FBtr0079680,FBtr0079678,FBtr0079679	1	3	3	116	2L	8483309	8483327	TTTGACCTAAACGCATCCA		59	8483407	8483574	GCTGTGATTCTTCGATGTC		58	NA	
Drosophila melanogaster	50	emb	FBgn0020497	FBtr0079663	2	1	1	81	2L	8406841	8406927	CTGCTAGATTATCAGCGCT		59	8406971	8406990	GTTTATGCACAATGATTGCC		58	NA	
Drosophila melanogaster	50	CG8486	FBgn0031993	FBtr0079583,FBtr0110893,FBtr0079582	3	3	3	81	2L	8188866	8188939	GACATTTATCTGGTACGGGA		58	8188983	8189001	GCGATCGGTATAGGAAGAG		59	NA	
Drosophila melanogaster	50	ninaC	FBgn0002938	FBtr0079436	2	1	2	80	2L	7383687	7383706	CAAAGATCCTCGTATCCTCC		59	7383748	7383818	ATCCTCAGAGTTATCACCCT		59	NA	
Drosophila melanogaster	50	CG13784	FBgn0031897	FBtr0110799	1	1	2	80	2L	7208574	7209360	ACTATCTCAATGACCTGGAC		58	7208513	7208531	ACACGACTAGCATGAAGTC		59	NA	
Drosophila melanogaster	50	sip2	FBgn0031878	FBtr0079360,FBtr0079357,FBtr0079359,FBtr0079358	3	4	5	86	2L	6961943	6961961	CAATGGAATCGATTCAGCC		58	6961811	6961829	GGAGTTCGTTCATCAACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Oscillin	FBgn0031717	FBtr0079102,FBtr0079101	1	2	2	152	2L	5548088	5548173	GATGAGTATGTGGGACTGG		59	5548289	5548307	CTCGAACTTATTGCACTCG		58	NA	
Drosophila melanogaster	50	Cyp28d1	FBgn0031689	FBtr0079062	3	1	1	106	2L	5210793	5210814	CAGAATTCCACAACTAATGGTC		59	5210881	5210963	TGCTGTCGGTAAACTTAGC		59	NA	
Drosophila melanogaster	50	CG2837	FBgn0031646	FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403	2	4	4	164	2L	4904903	4904923	GTTTACTCCAATATACCACCG		58	4904700	4904721	CTTGTTGAACGATTGATCATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mRpL27	FBgn0053002	FBtr0077451	3	1	1	269	2L	4459374	4459392	TACGAGGAATAAGAAGGGC		58	4459065	4459084	TTCTTGTAGATGTTCTGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17612	FBgn0031597	FBtr0077464,FBtr0077463	3	2	2	60	2L	4382273	4382291	GCAAATAACGACGTGATCC		59	4382231	4382251	GATCCTCAAGAATTACCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Traf1	FBgn0026319	FBtr0077429,FBtr0077430,FBtr0112925	3	3	3	71	2L	4379579	4379597	AGATCCAGATGCTCAAGTC		58	4379631	4379650	TGATCTTCCACAACAGAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k16918	FBgn0021800	FBtr0077497,FBtr0077498	3	2	2	99	2L	3807043	3807139	GGATATGGAAACTAGTGTTGC		58	3807200	3807218	CTGGTCGTACATGAGATGG		59	NA	
Drosophila melanogaster	50	Dot	FBgn0015663	FBtr0077532	1	1	1	60	2L	3620690	3620709	CCTAAAGAAAGCTCTTGCAG		58	3620788	3620806	GACCTCAAGAGATCGTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	NTPase	FBgn0024947	FBtr0077680,FBtr0077683,FBtr0077681	2	3	4	142	2L	2882504	2882702	CTTTGTCTTTGGCTTCGTC		59	2882380	2882398	GATTGAACTTGTAGGCCAG		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	syt	FBgn0004242	FBtr0077727,FBtr0077728	3	2	4	81	2L	2793377	2793395	ATGGAAAGGGTAAGAAGGG		58	2793251	2793333	TCCTCCATATCAGGTTTCTC		58	NA	
Drosophila melanogaster	50	CG15395	FBgn0031440	FBtr0114513	2	1	1	97	2L	2610653	2610672	CCAATGTGCTCAAGAATTCG		59	2610732	2610750	TTTGTGAAGTTGGGACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11617	FBgn0031232	FBtr0078146	2	1	1	61	2L	205204	205281	ATATGACCAGGCAGAAAGC		59	205161	205179	ATCTGTGGTAAAGATCGCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	l(2)gl	FBgn0002121	FBtr0078171,FBtr0078170	1	2	6	135	2L	15703	17062	TTATCGTAAGACGGCACAG		59	15586	15604	GTACAATTCAACTCCGGGT		59	NA	
Drosophila melanogaster	50	CG32500	FBgn0052500	FBtr0077374	1	1	2	102	X	21494389	21494407	GGAGAGCTTGAAGTTCCTG		59	21493238	21494323	CAATTTGGCCAAAGGACTG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG12433	FBgn0030811	FBtr0074379	1	1	1	60	X	16917251	16917272	GAGGATTACGATGCTAAATTGC		59	16917292	16917646	TATTTCGCTCGATCTCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9066	FBgn0030703	FBtr0074166	1	1	1	137	X	15782301	15782394	GGGAAATGCAGTTTAAGGA		57	15782182	15782200	ACTTGGGTAGGTTCTTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5877	FBgn0030625	FBtr0074002,FBtr0074001	3	2	2	60	X	15189828	15189849	CTGAATAATCGTCGTCATAAGG		58	15189870	15189888	ATTCGTTATTCTGCAGGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Flo-2	FBgn0024753	FBtr0073952,FBtr0073950,FBtr0073951,FBtr0073949	2	4	6	129	X	14820900	14824791	CATATTGGGAACGCTTACAG		58	14824883	14824901	GTCCTTGATCGTAAACGAG		57	NA	
Drosophila melanogaster	50	CG12096	FBgn0030457	FBtr0073727	1	1	1	113	X	13054955	13054973	TTAAGAAGTATGGCTCGCA		58	13055050	13055124	TAATGATTTCTGTGGCAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2989	FBgn0030171	FBtr0071416,FBtr0112972	1	2	2	120	X	9924356	9924450	CATAAATGAAGCCAGCAGC		59	9924532	9924552	CAAATGTGTACACAGGTATGG		58	NA	
Drosophila melanogaster	50	CG3044	FBgn0029913	FBtr0071041	3	1	1	93	X	6742653	6742671	CAATTACACGGTTCAGTGG		58	6742513	6742596	AACCAACGTAAATGAGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubi-p5E	FBgn0086558	FBtr0070933	2	1	1	116	X	6172016	6172034	ACCATTGAGAACGTTAAGG		57	6171918	6171936	GTTGTAGTCGGACAAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40972	FBgn0085548	FBtr0113961	1	1	1	61	U	9895878	9895896	GTGTAATCGTGCTAGTGTG		58	9895708	9895853	CTGACGAAATGCTGTACCA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40195	FBgn0058195	FBtr0113828	1	1	1	71	U	1047532	1047618	AAGAACAATAACGGCAGTG		58	1047479	1047500	GGATTTGTTTCTCCAAACTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131	1	5	5	80	4	369769	369856	TTCACTATGATATCACAGGTGC		59	369710	369730	CCACTGATCCAATGTTAAAGC		59	NA	
Drosophila melanogaster	50	CG2218	FBgn0039767	FBtr0085627	2	1	1	150	3R	26252986	26253004	GAGATAAGCGATCCCTACG		59	26252533	26252872	AGATCATTAGCTCCCAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spn-A	FBgn0003479	FBtr0085589,FBtr0085590	1	2	2	69	3R	25881634	25881652	CTAACGAATGTTCAGGCAC		58	25881520	25881604	CTATTAACTTAGTCACGCTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3339	FBgn0039510	FBtr0110855,FBtr0085171	1	2	2	85	3R	23140138	23140156	GACTCCTTAATCTGGCCTG		59	23140009	23140091	ATTCAACTCCTTCAGAGTTCC		59	NA	
Drosophila melanogaster	50	Sld5	FBgn0039403	FBtr0084975	2	1	1	235	3R	21881684	21881702	ACTTCCACAAAGTAGCCAC		59	21881409	21881427	TTAAATTAGCTGCGCTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4813	FBgn0039013	FBtr0084326	2	1	1	72	3R	18551260	18551278	CATCTATGGTCCTACGCAG		59	18551206	18551224	AACATTTCCCTCTGTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4907	FBgn0039010	FBtr0084330	1	1	1	103	3R	18535766	18535784	TAAACTACACCCAACGTGG		59	18535623	18535699	ACTTATCCCATAATCCGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6560	FBgn0038916	FBtr0084151	1	1	1	67	3R	17712055	17712073	AGGATTGGATAATGCTGGC		59	17711943	17712024	TTACCGTGGTTATGTCCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31465	FBgn0051465	FBtr0084147	3	1	1	93	3R	17708829	17708847	CAATCAATCGTCGGAAGAG		58	17708961	17708979	CCAGGATCCGTTTAGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Obp93a	FBgn0038859	FBtr0084030	1	1	2	82	3R	16955075	16955160	CTTTGCATGCATGTATTGC		58	16955011	16955030	CAATGCCTGGGTATTAACAG		58	NA	
Drosophila melanogaster	50	CG34282	FBgn0085311	FBtr0112478	2	1	1	83	3R	14520994	14521081	AAGGTTTCGATCATCTGCT		58	14521128	14521146	CTCGGCATAGATGTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gl	FBgn0004618	FBtr0083585,FBtr0083584	1	2	2	60	3R	14197167	14197470	CTGAACACAATTCTGGATTCC		59	14197127	14197146	CGCACGATATGTACATAGCT		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG18598	FBgn0038589	FBtr0083569	2	1	1	119	3R	14076899	14076917	GGTTTGGACAACTACAAGG		58	14077000	14077083	CTTGTCCTTTAGCAGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12347	FBgn0038558	FBtr0083519	1	1	1	60	3R	13732408	13732428	GGAATATCTTCATGACCACCT		59	13732447	13732468	CTGAATCCTGCAAAGTATTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18213	FBgn0038470	FBtr0083429	1	1	1	87	3R	12865224	12865309	ATAACCAGAATACGACCGC		59	12865155	12865173	GAGATTATCGTTCCCTCCG		59	NA	
Drosophila melanogaster	50	Actn3	FBgn0015008	FBtr0083380	3	1	1	60	3R	12803161	12803234	TCTGTTACGATGTACTCGG		58	12803119	12803138	AGTCTCAAGTAGTGTCAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31388	FBgn0051388	FBtr0082356	2	1	1	124	3R	7064216	7064234	GATAATCGGGACACTTCCT		58	7064321	7064687	CAGACGAATTTGGTATCTGG		58	NA	
Drosophila melanogaster	50	CG8369	FBgn0040532	FBtr0081920	3	1	1	72	3R	4648386	4648461	ATCCATTCGAGCAGAAGTC		59	4648495	4648515	AAATTGGACTTCTAGGACAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG2993	FBgn0037521	FBtr0081771	1	1	1	151	3R	3633480	3633704	ATTTACAGGGTTCCTCTGG		58	3633347	3633366	GACTCGTTGTTGATGTACAG		58	NA	
Drosophila melanogaster	50	CG10053	FBgn0037490	FBtr0081576	1	1	1	177	3R	3073004	3073091	CAAATTCCTGGTTGGTCTG		58	3073232	3073250	AATTGGTTTGTTGAGGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14450	FBgn0037184	FBtr0078537	3	1	1	101	3L	22720560	22720632	ACTACGACATAACCAAGGC		59	22720477	22720495	CGAATCCCTCCACATACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7202	FBgn0037086	FBtr0078393	1	1	1	116	3L	21485774	21485792	AAGTTTCTTGTTCCTGGCT		59	21485287	21485696	TCTGTGTATAATTCGACTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7017	FBgn0036951	FBtr0074856	3	1	1	75	3L	20204842	20205131	GAATAGAGCTAGCGGTGTC		59	20204785	20204805	GTATTCAAAGTCCTCGATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	825-Oak	FBgn0052208	FBtr0074985	1	1	1	60	3L	19465305	19465323	AGAGTTTCTAGCCTTCCGA		59	19465204	19465281	AGCGTATTTGAACATGGTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	nes	FBgn0026630	FBtr0075021,FBtr0075020,FBtr0075019	2	3	3	77	3L	19251448	19251640	CAAATAACCCGCTTCTACAC		58	19251390	19251408	CAGCTTGTAGATGTCCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7945	FBgn0036505	FBtr0075599	1	1	3	101	3L	15516656	15516674	GTCCAATGATGGCTTTGAC		59	15515585	15515662	TCCAGTATGGTGACAAATCTC		59	NA	
Drosophila melanogaster	50	CG17826	FBgn0036227	FBtr0076042	2	1	1	60	3L	11942985	11943064	AGAACTAAACACTATGGAGTGG		59	11943084	11943103	TTGACGATCCCATAAAGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	simj	FBgn0010762	FBtr0076262,FBtr0076264,FBtr0076263	1	3	3	80	3L	10680191	10680210	AGCAATTCTGTTTCCATCAC		58	10680253	10680346	GCGATCATTCTTCTGATCG		58	NA	
Drosophila melanogaster	50	CG8065	FBgn0036075	FBtr0076296	2	1	1	238	3L	10209382	10209460	TTCTGTTTCGCATCAAAGG		58	10210143	10210162	ATTTCATCAGATCGGAACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12262	FBgn0035811	FBtr0076808	3	1	1	109	3L	7713425	7713443	ATCTCGATGTGTTCACCAC		59	7713516	7713594	CAGGATCACAGGAGTTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	bin	FBgn0045759	FBtr0076900	2	1	1	194	3L	6986052	6986142	GGACAATGGCAACTATTACG		58	6986297	6986317	CAGGATATGTTCGTATACTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	ple	FBgn0005626	FBtr0076957,FBtr0076956	2	2	2	166	3L	6709238	6709257	TTAACTCACCATACCACACC		59	6708457	6708814	GAACCAGTATACCGTGGAC		59	NA	
Drosophila melanogaster	50	CG32846	FBgn0052846	FBtr0073009	1	1	1	86	3L	2951313	2951333	GCCTGTGGAAATATCTTATCG		58	2951184	2951265	CATACCAGAAGCATTGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16758	FBgn0035348	FBtr0072966,FBtr0072964,FBtr0072963,FBtr0072965	2	4	4	168	3L	2499617	2499702	AACCACGATGAGGTTATGG		59	2499467	2499485	CTTAGATGCGAGCTCAGAG		59	NA	InUTR
Drosophila melanogaster	50	CG17090	FBgn0035142	FBtr0072552,FBtr0072551	1	2	2	104	3L	569806	569887	CGGAATATGAGGTCCTTGAG		59	569954	569972	TCTTCAGGATCTTGATGGC		59	NA	
Drosophila melanogaster	50	Lsp1gamma	FBgn0002564	FBtr0072463	1	1	1	60	3L	66669	66688	AGGAATGGATTAAGATGGGC		59	66711	66794	TCGAAGGTCTCGTATTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	IFa	FBgn0053527	FBtr0091490	3	1	1	123	2R	20465423	20465441	GTATCCCGTTAAAGCCTCC		59	20465318	20465336	CCTATTTGCTGTCGTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9897	FBgn0034807	FBtr0071989	3	1	1	94	2R	18873370	18873446	GATAATTCTCGAGCCAATAGGA		59	18873297	18873315	CTAAGGATCCGCACTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pu	FBgn0003162	FBtr0071578,FBtr0071580,FBtr0071579	1	3	3	81	2R	17069023	17069041	TTCTACGGCAAAGTTTCCA		59	17069086	17069163	ATATTTCGACAATGCGTGC		59	NA	
Drosophila melanogaster	50	mRpL54	FBgn0034579	FBtr0071533	3	1	1	168	2R	16948710	16948788	AAATCAAACCGGATTCGGA		59	16948918	16948938	GGGTTCTAGAACTTCTTTAGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13430	FBgn0034518	FBtr0100495	3	1	2	77	2R	16439321	16439406	ATAATTTGGGTTCTGTGGC		57	16439203	16439221	AGTTCTTCAGGGTTTGGTG		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	Obp56a	FBgn0034468	FBtr0086476	3	1	1	65	2R	15585278	15585296	AACTCCTACTTCGTGATCG		58	15585324	15585582	ATTAAGGGACGATCCAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18605	FBgn0034411	FBtr0086571	3	1	1	76	2R	14865375	14865395	GCCAATTCGCTATATTCTCTG		58	14865433	14865526	TTGAGACGGAAATATTCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ngp	FBgn0034243	FBtr0086906	2	1	1	83	2R	13454602	13454623	CTATTCTTAGTGCCGAATATCC		58	13454482	13454558	ATAGATTGATGAGCGCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34186	FBgn0085215	FBtr0112379	2	1	1	128	2R	11032888	11032909	GCAATGACCTATATTTGTGGAG		59	11032582	11032688	ATCAAAGACAACAAGACGC		58	NA	
Drosophila melanogaster	50	Pcf11	FBgn0022063	FBtr0087458	1	1	1	80	2R	10752555	10752687	GGGAAAGTCTGACAAATCCA		59	10752494	10752514	GAATCGTCGTTGACTTTAAGC		59	NA	
Drosophila melanogaster	50	CG18324	FBgn0033905	FBtr0087523,FBtr0087524	1	2	2	68	2R	10057024	10057089	CATGATAAAGGCCCAACAG		58	10057121	10057139	GTATGCTTGTGCTGAAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr50Ca	FBgn0033867	FBtr0087629	1	1	1	161	2R	9661774	9661854	TCATATGAGGACATGCAGC		59	9661979	9661997	GATCCTAGAGTGGGTTTGG		59	NA	
Drosophila melanogaster	50	Cpr49Ah	FBgn0033731	FBtr0087924	2	1	1	166	2R	8301575	8301812	GCTCATACTTCTTGTGCTG		58	8301939	8301960	CCTTGTTGTACTTGATTATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13162	FBgn0033718	FBtr0087904	2	1	1	95	2R	8236024	8236101	TGATGAGCTACTCTCAGCA		59	8236160	8236178	TTATGTACAAGCAGTCCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr47Ea	FBgn0033597	FBtr0088190	2	1	1	140	2R	7139936	7140225	TACAACTACGAGACAAGCA		58	7139728	7139746	GTAGGTGATGGTGTAGACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8046	FBgn0033388	FBtr0088621,FBtr0088620	1	2	2	80	2R	5051521	5051597	GATCTTACAGGATGATTGCC		58	5051460	5051478	CGTATGCATAACCAGAACC		58	NA	
Drosophila melanogaster	50	CG8237	FBgn0033350	FBtr0088653	2	1	1	60	2R	4813722	4813743	GTTCAACATAGAGTTCGATGAG		58	4813764	4813782	AAAGAGGTCTTCTTGGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445	2	8	8	80	2L	20877198	20877217	GTTCTGCAAGAAGATACCAG		58	20877072	20877156	ATATACTGGGTACTCAGTCC		57	NA	
Drosophila melanogaster	50	CG31675	FBgn0051675	FBtr0081429	1	1	1	161	2L	20868507	20869117	TGAAACGGGTATTCAAGGA		58	20869242	20869260	ATCCGTTGCAGTAGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31789	FBgn0051789	FBtr0081071	2	1	1	60	2L	18606092	18606110	AGTCTCATCAGTTTCCCAC		58	18606196	18606214	TGCTAATGTACCGAATGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6860	FBgn0032633	FBtr0080969,FBtr0080968	3	2	2	84	2L	17372763	17372783	GGTTATACTGTGTCATTTGGC		59	17372634	17372717	CAACTTATTGACACCGGGA		59	NA	
Drosophila melanogaster	50	CG6860	FBgn0032633	FBtr0080969,FBtr0080968	1	2	2	80	2L	17372753	17372772	GTCATTTGGCCAACTATGTG		59	17372627	17372713	CCATTGTCAACTTATTGACACC		59	NA	
Drosophila melanogaster	50	CG6115	FBgn0040985	FBtr0080959	3	1	1	183	2L	16887665	16887798	AAGCACTTGCAGTATTTGG		58	16887500	16887518	ACTTCTTCAGCGAGTACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15279	FBgn0028886	FBtr0080686,FBtr0080685,FBtr0100264	3	3	3	82	2L	14845466	14845487	TCTGATCTATTTCTATGCGACC		59	14845350	14845424	GCCAACCAATTGAGTAAGAC		59	NA	
Drosophila melanogaster	50	CG6043	FBgn0032497	FBtr0089911,FBtr0089910,FBtr0114471,FBtr0113039,FBtr0113040	1	5	5	141	2L	13276279	13276383	CAACAACGATATGATGCCC		58	13276488	13276506	TTTCAGGTGTTGTCATTGC		58	NA	
Drosophila melanogaster	50	CG14934	FBgn0032381	FBtr0080275	3	1	1	124	2L	11848721	11848742	CATTACAAGATCTATCAGTCCC		57	11848827	11848916	TGCTCGTTCTTCAGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31870	FBgn0051870	FBtr0080137	3	1	2	136	2L	10790357	10790434	TAGGAACTATGGACCTGGA		58	10790534	10790552	CCTTATAAGCAGCAGGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4995	FBgn0032219	FBtr0079989,FBtr0079991,FBtr0079990	3	3	3	60	2L	10324293	10324381	TCTAAGGGATATTCCAGGCT		59	10324404	10324422	TTGACGCATAAGGTACTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Aats-ala	FBgn0027094	FBtr0079721,FBtr0079722	2	2	2	252	2L	8380664	8380683	CGATCTAACTACGATACCGA		58	8380308	8380449	ACTTCTCAGTGGCATAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34132	FBgn0083968	FBtr0110879	3	1	1	90	2L	7885725	7885743	AATTGCTCACGCAAATGAC		59	7885796	7885887	GAAATGCATTTCTGTTCGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aru	FBgn0029095	FBtr0078033,FBtr0078031,FBtr0078032	1	3	3	87	2L	862623	862641	TAAGATTGTGCTGGTCACC		59	862490	862575	ATCAAGGATCTCCAAGTATTCG		59	NA	
Drosophila melanogaster	50	RpS28a	FBgn0039739	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG32551	FBgn0052551	FBtr0074564	2	1	1	67	X	18333922	18333941	AAAGTTCGGAGTATGGTGAC		59	18333971	18333989	GATGTTCGATGCTTGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4872	FBgn0030799	FBtr0074339	2	1	1	97	X	16776518	16776536	AAGGAGCTAGAAATCAGCA		58	16776688	16776706	TTTGCGCTAGAGATAATGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	His3.3B	FBgn0004828	FBtr0071345,FBtr0071347,FBtr0071346	2	3	3	218	X	9048446	9048464	GGATTTCAAGACCGATCTG		57	9048107	9048125	ACGACAGTGATCGAATCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297	2	4	6	118	X	9005030	9005125	CGAGCATGGATTTAATCCAG		58	9005449	9005467	GAATCTGTCGGATGAGGTC		59	NA	
Drosophila melanogaster	50	CG1440	FBgn0030038	FBtr0071197,FBtr0112961,FBtr0112962	3	3	3	92	X	8334503	8334584	GTATCCGTGGATAAGAGCG		59	8334640	8334658	GTTCATCACCAGATAGCCC		59	NA	
Drosophila melanogaster	50	fs(1)h	FBgn0004656	FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119	3	5	5	119	X	7944306	7944477	CAAGAAAGATGAGTCCGCT		59	7944205	7944223	TCACTCGAACTGCTATCAC		59	NA	
Drosophila melanogaster	50	egh	FBgn0001404	FBtr0070440,FBtr0070439	3	2	2	129	X	2491030	2491048	CAGTTATGTGGTCACCCAG		59	2491451	2491470	GATGAAGTTGAACGTGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	2	8	8	61	X	551358	551376	GGATGATGAGAGCAAGGAG		59	551401	551419	TTAGGAAATCTGCATCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3156	FBgn0023536	FBtr0070079	1	1	1	80	X	383445	383524	TTTCTTTGGATTGACTGGCT		59	383564	383585	TCTTGTAATACCAAGGTTCCTC		59	NA	
Drosophila melanogaster	50	Syt7	FBgn0039900	FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475	3	5	6	156	4	323148	325657	GTAGTTATAGTCTTCGGGCTG		59	323012	323033	CCAATCAAAGGAGTTCTAAGAC		58	NA	
Drosophila melanogaster	50	Myo95E	FBgn0039157	FBtr0100517,FBtr0100518,FBtr0100519,FBtr0100520	2	4	7	116	3R	19985037	19985205	TACCCATTACCCGTATAACG		58	19984882	19984901	CATTTCGATACAGCTTGAGC		59	NA	
Drosophila melanogaster	50	Rpn9	FBgn0028691	FBtr0084469,FBtr0084470	1	2	2	120	3R	19557825	19557843	TTCTTGAGTCGCTTAAGGG		59	19557662	19557680	AAATCGGGAATCTTGGACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mvl	FBgn0011672	FBtr0089521,FBtr0089522,FBtr0089523	3	3	3	82	3R	16882560	16883306	GGCTATGAGTACATTGTATCAG		58	16882499	16882517	GAATTGCAGTTAGAGCACC		58	NA	
Drosophila melanogaster	50	CG14315	FBgn0038568	FBtr0083547	2	1	1	63	3R	13984777	13984795	ATATCGTTGATGGCACTGG		59	13984822	13984840	GGTTCCTTCCATCATACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rbp4	FBgn0010258	FBtr0082853	3	1	1	100	3R	9480584	9480602	CACCCAGGACTATAAGGTC		58	9480415	9480520	CTTAGATACCGTAGGGTGG		58	NA	
Drosophila melanogaster	50	sim	FBgn0004666	FBtr0082711,FBtr0082710	2	2	2	89	3R	8900718	8900810	GGATTTAAGGTGATACACTGC		58	8900861	8900879	GAGATTCTGGATGAGGCTG		59	NA	
Drosophila melanogaster	50	Ama	FBgn0000071	FBtr0081619,FBtr0081620,FBtr0081618	3	3	3	65	3R	2589588	2589607	TCTTATATTCTGCCTTGCGA		58	2589635	2589653	CTGATCTGGCTGATCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6049	FBgn0037081	FBtr0078400,FBtr0078399,FBtr0078398	1	3	3	80	3L	21414146	21414217	GTTATCTATGATCGCCATCCT		59	21414086	21414105	CATTTGAATGACGAGGTCAG		58	NA	
Drosophila melanogaster	50	CG17145	FBgn0036953	FBtr0074823	1	1	1	62	3L	20215058	20215076	CTTCAAGGCCTAGATGTGG		59	20215102	20215120	ATTATTGGAGAACAAGCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14082	FBgn0036851	FBtr0075031,FBtr0114620	3	2	2	178	3L	19101292	19101310	CTGTACTGTGATACCCTGC		59	19101132	19101150	GACAAATTGGGTGATCCCT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13035	FBgn0036628	FBtr0075414,FBtr0075415	3	2	2	97	3L	16391793	16391813	TTGGTCATATCCTGTATTCCC		58	16391124	16391735	AAGGTGAAGTTCTTGTCCTG		59	NA	
Drosophila melanogaster	50	CG10943	FBgn0036320	FBtr0075936	3	1	1	60	3L	12855638	12855657	GGATAGATTTGATGCTCAGG		57	12855597	12855617	TAAGGTTGACAATTCCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076331,FBtr0076333,FBtr0076335	1	3	8	246	3L	9817658	9817676	CGATCAAATAACGAAGCCC		58	9823879	9824111	ATAAATGGGACCCTGAGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Idh	FBgn0001248	FBtr0114547,FBtr0076670	1	2	9	114	3L	8351125	8351143	TAATGAAAGGATGTCCGCC		59	8350919	8350937	TTGGCTCTTAATGGAGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Lcp65Ac	FBgn0020642	FBtr0076991	1	1	1	118	3L	6138330	6138348	TACACGGTCAACTACATCG		59	6138430	6138448	TACATAGAACAGCTCTCGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Ptpmeg	FBgn0035133	FBtr0072545,FBtr0072542,FBtr0072544,FBtr0072543	3	4	4	80	3L	354436	354509	CATATCACCATATGACTGCAC		58	354551	354569	ATGTTTACGTAGTTGGCGT		59	NA	
Drosophila melanogaster	50	Pk61C	FBgn0020386	FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466	2	8	8	87	3L	142804	142822	ATATCGCGACTGCTTAGTG		59	142873	142954	GGTCGAAAGAGTTCTTTGC		59	NA	
Drosophila melanogaster	50	CG4741	FBgn0035040	FBtr0072337	3	1	1	231	2R	20501686	20501706	GGATTGGGAATACGTTAACAC		59	20498783	20498801	ATTGATCTCCATTTGGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10320	FBgn0034645	FBtr0113102,FBtr0113101	1	2	3	213	2R	17545965	17545983	ATTGAAGGATCCATGGCTG		59	17546219	17546237	CTTATCTCCGTGTTCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9754	FBgn0034617	FBtr0071615	2	1	1	60	2R	17198495	17198514	AACTCCCTGTTAATGAGTCC		59	17198454	17198473	CAAATTGGCGAAGGATTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15086	FBgn0034374	FBtr0086650,FBtr0086648	3	2	4	96	2R	14570959	14570977	TGGAAATGAATGTGGATGC		58	14570540	14570899	GAACAAGTTTGAGCTGTCC		58	NA	
Drosophila melanogaster	50	Dp1	FBgn0027835	FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682	3	6	6	84	2R	14304948	14304966	TCATCTCCTCGATCATGGA		59	14305013	14305092	CGAATAGTGACCTTATCGCT		59	NA	
Drosophila melanogaster	50	CG12821	FBgn0040780	FBtr0113332,FBtr0113331	2	2	2	84	2R	3721686	3721705	TTAGTGTGGAGTACCATGTG		59	3721751	3721827	AGACTTCCATCTGATCTGTG		58	NA	
Drosophila melanogaster	50	CG12822	FBgn0033229	FBtr0088842,FBtr0088841	1	2	2	158	2R	3719998	3720016	GACATTGAGACGATAACCC		57	3720138	3720215	ATAATTGCTCTGACCTTGG		57	NA	Nonspecific
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111094	2	1	60	97	2R	3236476	3243419	GTGCCCGTTTATAGATGGT		59	3236397	3236415	ATGAGAGTACCAGAGACCT		58	NA	
Drosophila melanogaster	50	Eb1	FBgn0027066	FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130	3	5	5	160	2R	2642342	2642416	CAAATCAGGTGATGGATATGC		59	2642600	2642619	AGTCGCATATAAGATGTCCA		58	NA	
Drosophila melanogaster	50	CG17082	FBgn0039994	FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289	1	6	6	87	2R	637011	642015	TTGAACAAGGGTTAGAGGT		58	642066	642084	AGTTGTACAATCGCTTCAG		57	NA	
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0081213,FBtr0081212,FBtr0081210	2	3	6	178	2L	19410626	19416414	GATGCTCTATTAGCCGACC		59	19410400	19410485	TAGTGCTCTTGATACACCTG		58	NA	
Drosophila melanogaster	50	Ca-alpha1D	FBgn0001991	FBtr0090005	1	1	4	116	2L	16177203	16177224	GCATAGATATCGATATGGAGCA		59	16177384	16177686	AATTGGAGTCTTCCTCTTCC		59	NA	
Drosophila melanogaster	50	TepII	FBgn0041182	FBtr0079511	3	1	5	101	2L	7697150	7698736	CTTACAACACTGAAAGACGA		57	7697068	7697086	TAACGTTTGGTGGTAAGGA		58	NA	
Drosophila melanogaster	50	CG3338	FBgn0031598	FBtr0077462	3	1	1	139	2L	4385254	4385331	CATCGAGGAAATCAAGAATCTC		58	4385136	4385154	ACTGGTTAAGACCCAAACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	drongo	FBgn0020304	FBtr0078035,FBtr0078036,FBtr0078037	1	3	3	111	2L	836547	836565	TCCCATCTACAATGCAGTG		59	835456	835474	CTTAAGAGCGGCATATCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4297	FBgn0031258	FBtr0078085,FBtr0078086	1	2	2	60	2L	460660	460678	ATGATGAGAAGCCTGATCC		58	460618	460637	TTCCCATGCAGATATTTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32528	FBgn0052528	FBtr0074793	2	1	1	139	X	19640341	19640691	AGTGAAGAAGGTCCAAGAG		58	19640873	19640891	GATCACTGATGGACTGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	140up	FBgn0010340	FBtr0082909	2	1	1	74	3R	9950582	9950662	TTACCACATCCTACTTCGG		58	9950526	9950547	CCAAGTATTCGTAGATTGAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11000	FBgn0037380	FBtr0113195	2	1	1	119	3R	1631989	1632737	AAAGCAAATGTTCTGGAACC		59	1632819	1632837	TCCTTTACCAGGATCTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Itp-r83A	FBgn0010051	FBtr0078687,FBtr0078686	1	2	2	80	3R	1356643	1356718	CCATACAGGACTACGATGG		58	1356760	1356780	CGATGGTTGTATTGAACTTGG		59	NA	
Drosophila melanogaster	50	PGRP-LA	FBgn0035975	FBtr0076434,FBtr0076432,FBtr0076435,FBtr0076433	1	4	4	144	3L	9330633	9330651	CCTTTATGGGCGACTATGG		59	9330758	9330842	CTTCTGGTCACCTTAGTCTG		59	NA	
Drosophila melanogaster	50	CG34045	FBgn0054045	FBtr0100100	2	1	1	104	2R	15222293	15222484	GATGCTGTATGGCAATAAGC		59	15222551	15222569	TTTGTCGAGTTCCTAACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34007	FBgn0054007	FBtr0100062	3	1	1	96	2L	20495222	20495299	TCTATCCCAAATACGTGCTG		59	20495358	20495376	GATTGTCAGGACGAAACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13965	FBgn0032834	FBtr0081308	2	1	1	207	2L	19962205	19962283	CTGAAGCTGATTGGAATCG		58	19962016	19962035	TGCTATTAACCATATCGGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15153	FBgn0032663	FBtr0081045	3	1	1	61	2L	18091505	18091525	TATGCCCAACATGAAGTACTC		59	18091261	18091484	TGTAGCTTATCTCGTTGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2983	FBgn0031472	FBtr0077620	3	1	1	61	2L	2848444	2848521	CTACAGAACGCAAGATGGA		59	2848545	2848564	GAACGTAGTGAAACGATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40454	FBgn0085735	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:M-i:61D	FBgn0052482	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30249	FBgn0050249	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR31885	FBgn0051885	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG13947	FBgn0031277	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Or-aca2	FBgn0082924	FBtr0113562	1	1	1	67	X	7795167	7795186	GATCAAACAAATTGCAAGCG		59	7795119	7795138	GCGGAGATAATATCATCCAC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41475	FBgn0084035	FBtr0111202	2	1	1	102	X	22261336	22264652	CGACGAAACTCTGTATTTGTG		59	22264716	22264734	ATGACAAAGAGTACGCCAG		59	NA	
Drosophila melanogaster	50	Rab35	FBgn0031090	FBtr0070028	2	1	1	85	X	20052026	20052046	GGAGGAGATCCAGAATAACTG		59	20051828	20051846	TAATGACCACCTTCCTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14215	FBgn0031052	FBtr0074746	3	1	1	93	X	19548265	19548283	TCCTCAGATCTACCACGAG		59	19548337	19548493	CATGGCAATCTTAGAGAATGTG		59	NA	
Drosophila melanogaster	50	CG8028	FBgn0031010	FBtr0113005,FBtr0074685	2	2	2	240	X	19171810	19171828	CCTCCCACTAATCTCACTC		58	19171509	19171527	TCTTGTCCCGAATAAACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7874	FBgn0030999	FBtr0074672	2	1	1	85	X	19107687	19107705	CCGAGTGAGGAAACTACTG		59	19107754	19107772	GTCTCTACATCTCCAGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32547	FBgn0052547	FBtr0114369	3	1	1	112	X	18341147	18341227	TCTTCCTGCTGATGTACTG		58	18341053	18341071	ATGCTCGTACATCATGACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	por	FBgn0004957	FBtr0074577	3	1	1	74	X	18273102	18273120	CTGGGCTACATCTACAGTC		58	18273046	18273064	CAGACAGTCCATGTAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAP16F	FBgn0030893	FBtr0074513	1	1	2	80	X	17990422	17990440	AATCAAGAGTCCGTTGGTC		59	17990483	17990564	GACAGATCGGTTAACAACCA		59	NA	
Drosophila melanogaster	50	RhoGAPp190	FBgn0026375	FBtr0074483,FBtr0074482,FBtr0074481	2	3	3	81	X	17542202	17542220	TCTCAATTACCGAATCGCC		59	17541816	17542158	GTACACGCAAATAAGACCAC		59	NA	
Drosophila melanogaster	50	B-H2	FBgn0004854	FBtr0074429	2	1	1	196	X	17215116	17216700	GAATCGCAGAACCAAATGG		59	17216859	17216878	CCTGGCGGTAATAGATATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13004	FBgn0030797	FBtr0112996	1	1	2	111	X	16721788	16721806	TCATCTGCGGTTATGTCAC		59	16721625	16721714	TTCTGGGAGTTGATATGTGG		59	NA	
Drosophila melanogaster	50	CG4829	FBgn0030796	FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337	2	5	5	92	X	16718723	16718742	GAGAAGGGATACCATGTGTC		59	16718794	16718964	CAAATAGATTTGGTACTGCTCG		59	NA	
Drosophila melanogaster	50	CG4678	FBgn0030778	FBtr0074320,FBtr0074319	2	2	3	110	X	16602677	16602698	GGATTGGATATCCAAGATTCAG		58	16602769	16603422	GAGTAGGTCTGGAACATGG		59	NA	
Drosophila melanogaster	50	CG9699	FBgn0030772	FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369	1	6	7	76	X	16588098	16588116	CATTGAGGCGGTTAAATGC		59	16580767	16580785	TGTAATCGCGATCCTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13012	FBgn0030769	FBtr0074374	3	1	1	123	X	16563467	16564099	GAGGACTCGATTACCAAGG		59	16563362	16563380	AAGATACCATGGACACGAG		58	NA	
Drosophila melanogaster	50	Nup153	FBgn0061200	FBtr0113475,FBtr0074284	3	2	2	60	X	16494295	16494313	GGAAGAGGATGAATCCTCG		59	16494337	16494421	CATGATGGAGTTGTTGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9784	FBgn0030761	FBtr0074289	1	1	1	60	X	16491325	16491343	CATGCAGCTATCCATTGAG		58	16491283	16491301	ATCACTGATGGTGTACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	exd	FBgn0000611	FBtr0074136,FBtr0074135,FBtr0074137	2	3	3	93	X	15888238	15888257	AATTGGAGAAGTACGAGCAG		59	15888313	15888394	TTTGGTGTAATGGGTCTCG		59	NA	
Drosophila melanogaster	50	eIF5	FBgn0030719	FBtr0074149,FBtr0074144,FBtr0074148,FBtr0074147,FBtr0074146,FBtr0074150,FBtr0074145	3	7	7	131	X	15882571	15882661	TTCGATCACAAGAATGAGC		57	15882458	15882476	AGTTAAATTGGTCTCCGGA		58	NA	
Drosophila melanogaster	50	CG8928	FBgn0030711	FBtr0074132	3	1	1	61	X	15839249	15839267	CAGAACGCACATTGAACAC		59	15839291	15839310	GTTCAAGTACACAAGGTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8928	FBgn0030711	FBtr0074132	1	1	1	60	X	15839301	15839319	GTACTTGAACAGCACACTG		58	15839343	15839361	ATTTGAGGCATCTTCACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6324	FBgn0030647	FBtr0074037	3	1	1	181	X	15374491	15374509	TTCATCGGAGATGCAAGAG		59	15374751	15374997	TATTAAAGCGACGCTTTGC		59	NA	
Drosophila melanogaster	50	CG14414	FBgn0030571	FBtr0073931,FBtr0073930,FBtr0073932	1	3	3	295	X	14475629	14475647	CAATGCGCTACTGAAACTG		59	14475980	14475998	CGCGATCCTTGTTAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	dpr8	FBgn0052600	FBtr0073913	3	1	1	181	X	14338550	14347009	CAACATTGTTGAACCCGTC		59	14348118	14348136	TGACTAATGATATGCCGCC		59	NA	
Drosophila melanogaster	50	CG13403	FBgn0030544	FBtr0073928	1	1	1	63	X	14085585	14085603	CTGGTTATTACTCGGGTGG		59	14085540	14085558	TAGTTCTTGTAGCTGGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	up	FBgn0004169	FBtr0073851,FBtr0100563,FBtr0073852	1	3	6	109	X	13493488	13494116	GATGAAGAGTACACCAGCTC		59	13490755	13490773	TTGATGAACTCTGGATCGC		59	NA	
Drosophila melanogaster	50	CG15743	FBgn0030465	FBtr0073755	1	1	1	60	X	13180750	13180768	CAAATCTTCTCCGAGGAGG		59	13180790	13180810	GATCTAGATCATAGCCGTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32644	FBgn0052644	FBtr0073714	2	1	1	80	X	12862154	12862271	CAGTGGACAAGAGTTATTCGA		59	12862313	12862331	CCAACATCAACAAGCTTCG		59	NA	
Drosophila melanogaster	50	Smr	FBgn0024308	FBtr0073707,FBtr0073706,FBtr0073708	3	3	3	87	X	12604889	12604909	GCAATTATCTTGGACAGAAGC		59	12604744	12604841	TTGGATTCACTAACATCCGA		58	NA	
Drosophila melanogaster	50	CkIalpha	FBgn0015024	FBtr0073680,FBtr0073682,FBtr0073681	2	3	3	82	X	12550118	12550137	CTGAACTATTGTCGTAGCCT		59	12550182	12550381	GTTCTGAACAGTATGCGGA		59	NA	
Drosophila melanogaster	50	CG1824	FBgn0030403	FBtr0073658	3	1	1	74	X	12489034	12489052	TTTGTGGACCTACTTGGAG		58	12488903	12488922	ATATAAGCCACTATCAGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073483,FBtr0073492,FBtr0073491	3	3	12	180	X	11276005	11281814	ATAGCTGATAATCAGCGCA		58	11281957	11282028	GTATCTGTGAAGTCTGGGAC		59	NA	
Drosophila melanogaster	50	CG18292	FBgn0030269	FBtr0073437	3	1	1	89	X	11032020	11032041	GTGGACATAGTTAAGTTACCAC		58	11032091	11032109	TGGATATCCATGATGTCCA		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	sesB	FBgn0003360	FBtr0073423,FBtr0073422,FBtr0073421,FBtr0073424	3	4	4	116	X	10676325	10676422	GTACAAGCAGGTCTTCCTG		59	10676227	10676245	GGGTAGACAAAGCACAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2889	FBgn0030206	FBtr0071450	2	1	1	97	X	10369643	10369720	GACTCCTCAGATGATGAACC		59	10369780	10369798	GATATCGGACCCTGATCCT		59	NA	
Drosophila melanogaster	50	ric8a	FBgn0028292	FBtr0071317	2	1	1	64	X	9150342	9150360	CACCTGAAACGACTAGAGG		59	9150388	9150406	GTGTTGAATTCGTCCAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7065	FBgn0030091	FBtr0071299	3	1	1	127	X	9038862	9038880	AAAGGAGAAGCTTAAGGGC		59	9038971	9040049	CGTTGGTACCTTTGAAGGT		59	NA	
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071271,FBtr0071270	2	2	10	101	X	8770411	8770431	CGTGTAAAGAAGTATGTGGAC		58	8770084	8770349	TGATCCAGTCATATCATCGG		58	NA	
Drosophila melanogaster	50	CG11265	FBgn0030049	FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964	1	4	4	141	X	8459066	8459084	ATGATATCGGTCGAAGCAG		59	8459189	8459419	ATGATTCGACCCAGTATCG		58	NA	
Drosophila melanogaster	50	Sptr	FBgn0014032	FBtr0071241	3	1	1	61	X	8357605	8357623	CATCAAAGTCCTGGAAGCA		59	8357562	8357580	GCTCATCCCTGTAATCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32711	FBgn0052711	FBtr0071248	3	1	1	144	X	8302474	8302564	AAGCAATGGCACAATACAC		59	8302285	8302304	TCTTAGAAGTCATCTGCACG		59	NA	InUTR
Drosophila melanogaster	50	Traf2	FBgn0026318	FBtr0071188	2	1	1	60	X	8049920	8049938	TCGAACATCATACAGCTGG		59	8049878	8049897	TGATCTCGATCTTGATGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sn	FBgn0003447	FBtr0071101,FBtr0071100,FBtr0071102	2	3	3	84	X	7879376	7879471	AGGATCTGCATAAGATCGC		59	7879519	7879537	AATCGGTTCCATCATCCAG		59	NA	
Drosophila melanogaster	50	CG1531	FBgn0029985	FBtr0071098	3	1	1	87	X	7844741	7844759	GATTCCCAGCATATTAGCG		58	7844808	7844906	CGTAAAGTAATCCTGATCGAG		58	NA	
Drosophila melanogaster	50	CG33667	FBgn0053667	FBtr0091646	1	1	1	60	X	6365896	6365914	ATTGAAGACGATGTCGAGG		59	6365854	6365872	TAACTACTGCACCACATCC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3774	FBgn0029849	FBtr0070875	2	1	2	105	X	6114596	6115421	TACCCTTCCAATATGGCTC		58	6115489	6115508	CGATTTGAATGATCAGCTCC		59	NA	InUTR
Drosophila melanogaster	50	CG5928	FBgn0029836	FBtr0100295,FBtr0070871	2	2	2	80	X	5962699	5963093	CTCAACACCTTTATTCAGAAGC		59	5963131	5963152	TCCTATGATATCCAATTGAGCC		59	NA	InUTR
Drosophila melanogaster	50	CG33080	FBgn0053080	FBtr0070845,FBtr0070844	2	2	2	141	X	5604996	5605518	ATATTTCTGATCGGCTATGC		57	5604874	5604892	ATTGACCCGATATCACCTC		58	NA	
Drosophila melanogaster	50	CG15778	FBgn0029788	FBtr0070803	3	1	1	76	X	5578110	5578128	TATTATCGCGATACGGAGC		59	5578238	5578257	ATATTGGCCATTTGGTAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15464	FBgn0029748	FBtr0070743	1	1	1	61	X	5081425	5081443	GCATCATACAGTGTTTGGT		58	5081845	5081863	CTAGGTCAAAGGTTCTCCC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2713	FBgn0024978	FBtr0070497	2	1	1	179	X	2625007	2625025	ATCATGTGAAGAACCTGGA		58	2624728	2624806	TCTGCGCAATTATCTTTAGG		58	NA	
Drosophila melanogaster	50	CG2694	FBgn0024991	FBtr0070482,FBtr0070483,FBtr0070481	2	3	3	104	X	2609385	2609403	GAAACCGACATGAAGACAC		58	2609551	2609569	CATCTCGTTCAGATTCTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	2	13	13	80	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567130	2567220	TGTATTGAGAGCTCATGCTC		59	NA	
Drosophila melanogaster	50	CG4045	FBgn0025629	FBtr0070331	2	1	1	68	X	1969242	1969260	GCCTATATCCTCAGGAAGG		58	1969125	1969143	TATCCACTTGTGCAAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	trr	FBgn0023518	FBtr0070362,FBtr0070363	1	2	2	82	X	1776708	1776782	TTGGCGAGATCTAAGATCC		58	1776644	1776665	CCAATGTACTCGATTATCATGG		58	NA	
Drosophila melanogaster	50	CG14801	FBgn0024988	FBtr0070305,FBtr0070304,FBtr0070306,FBtr0070307	1	4	4	83	X	1738112	1744662	GCATCGAAGACAAACTCCT		59	1744709	1744727	AGTCTATATCCTCGCTGGT		59	NA	
Drosophila melanogaster	50	SNF1A	FBgn0023169	FBtr0070216,FBtr0070218	2	2	3	80	X	1270212	1270739	TTGTACCAGGTCATATCGAC		58	1270781	1270800	AATATAGTCGAACAGCTCCC		58	NA	
Drosophila melanogaster	50	CG41576	FBgn0085702	FBtr0114151	1	1	1	60	U	6401115	6401135	CGTAGTGATTCCATGATAAGC		58	6401157	6401175	AAGCAGTTCAAGACAAGTC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	dpr7	FBgn0053481	FBtr0113462,FBtr0113463	2	2	3	81	4	270357	270431	GTTCACGTATTAACTGGTGAG		58	270296	270315	TTATCATTGCAGTGAAAGCC		58	NA	
Drosophila melanogaster	50	tre-1	FBgn0085056	FBtr0113492	3	1	1	60	3R	12591664	12591684	CTCATAAATTTACCGGGACAC		58	12591624	12591642	GGTTCTCCAGATACTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11539	FBgn0039859	FBtr0085868	1	1	1	64	3R	27441570	27441588	CTTAGAAGAGGAGCACGAG		59	27441524	27441542	CAATGAAGGTCAGCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PH4alphaPV	FBgn0051015	FBtr0085670	3	1	1	80	3R	26473290	26473382	CTGTTAAAGCTTAACCAGCA		58	26473229	26473247	CAGTTTAATATCGTGCGGG		58	NA	
Drosophila melanogaster	50	CG31013	FBgn0051013	FBtr0085671	1	1	1	85	3R	26470934	26471014	CAGTACAATGACAGCATGAG		58	26470868	26470886	TGAATAGCATCCGATGGTC		59	NA	
Drosophila melanogaster	50	Acph-1	FBgn0000032	FBtr0085610,FBtr0085609	1	2	2	104	3R	25818488	25818562	GATTTGACCAATTTGGGCA		58	25818402	25818420	GTAGATGTTCTCGTTGGAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG7866	FBgn0039725	FBtr0085504,FBtr0110889	2	2	2	68	3R	25759755	25759773	TTTCTCGTCATGGACATCC		59	25759805	25759972	ATCGCTGGCATTAAATTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	fig	FBgn0039694	FBtr0085538	3	1	1	72	3R	25605299	25605317	AGAGCACGATCTACTTGTG		59	25605245	25605263	GAAACTGGCATTCATGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11501	FBgn0039666	FBtr0085426	1	1	1	297	3R	25319591	25319609	AAATCCAATCATGGCATCC		58	25319870	25319888	AAATTCCTGTGACCAATCG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085377	3	1	8	106	3R	24959596	24959614	TAAACCAAACGACCGAGTC		59	24959681	24960297	GTTTGATTTCTCCATGTAACCG		59	NA	
Drosophila melanogaster	50	CG11828	FBgn0039616	FBtr0085338	2	1	1	98	3R	24749510	24749529	TGAAGAGAAATTGGATCCTG		57	24749590	24749664	GGTAAATCATGCATAGCGA		57	NA	
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0110913	2	1	9	80	3R	24727254	24745225	ATTATCTAACAGCAAAGCCC		57	24745268	24745286	TGTGATGGAGAATGTCTCC		58	NA	
Drosophila melanogaster	50	CG9989	FBgn0039593	FBtr0085307	1	1	1	100	3R	24496949	24497017	TACGTAAACACCGTTCCAC		59	24497081	24497099	AAACAAGCTTGTGTTGCTC		59	NA	
Drosophila melanogaster	50	CG4849	FBgn0039566	FBtr0085257	3	1	1	138	3R	23790245	23790322	TAAACAAGATTGATCGCCTC		57	23790481	23790500	GGCGAAACTAAGAGATTGTC		58	NA	
Drosophila melanogaster	50	wdb	FBgn0027492	FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206	1	7	7	125	3R	23392424	23392442	AAATTCTTAGGACTGCGGG		59	23392253	23392336	GTTGATGATACTGCCAAGGA		59	NA	
Drosophila melanogaster	50	dys	FBgn0039411	FBtr0113293,FBtr0084970,FBtr0113294	3	3	3	85	3R	21904395	21904539	AAGTACTCAACGATCGAGAG		58	21904329	21904347	GAACTGGATCTTCGACTGG		59	NA	
Drosophila melanogaster	50	CG5111	FBgn0039343	FBtr0084880	2	1	1	60	3R	21333523	21333542	CTTACTACTCTACAGCACCT		57	21333565	21333583	TAGTTTCCAAAGCATCTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31087	FBgn0051087	FBtr0084855	1	1	1	80	3R	21137039	21137117	GGTTTGGCTGCTTATATGG		58	21136977	21136995	GCTTTCCAGATTAGCATCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG10514	FBgn0039312	FBtr0084864	1	1	1	60	3R	21104634	21104653	CTTCTCTAAAGGAGCCACTG		59	21104593	21104612	TTGTGGTAGAACTGGAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11839	FBgn0039271	FBtr0084766	2	1	1	60	3R	20896234	20896253	AACTACTGTCGAGAAACTGC		59	20896273	20896294	CTCCGATTTATTGGTCTTATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rox8	FBgn0005649	FBtr0084591	1	1	4	151	3R	19870107	19870125	GTATCCATACGCGTACCAG		59	19869856	19869925	ATTGTATGCAAGGGACTCC		59	NA	
Drosophila melanogaster	50	fzo	FBgn0011596	FBtr0084399	1	1	1	60	3R	19028881	19028899	AGAAGGTAAAGGATCAGCA		57	19028839	19028857	ACACCTAATTCATCCACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	loco	FBgn0020278	FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273	3	4	4	86	3R	18446567	18446652	GCACCAAGATGAACTACTC		57	18446499	18446517	AAGTCGAAGTTGATTTCGG		58	NA	
Drosophila melanogaster	50	Gr93a	FBgn0041229	FBtr0084133	1	1	1	60	3R	17659187	17659207	CTATCTACAGCGAACTCTACC		59	17659228	17659247	ATCTGCCATTGTAGAATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13420	FBgn0038900	FBtr0084130	3	1	1	64	3R	17594518	17594536	ATCTCTGGTACGGAAAGTG		58	17594563	17594582	GGATTCTCCTCGTACATACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7956	FBgn0038890	FBtr0100124,FBtr0110891,FBtr0084112	1	3	3	90	3R	17350160	17350178	AAATCTCCGTTTATGGTGC		58	17350229	17350313	GAGTATAGTCTCCCTTTAATGC		57	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0110938,FBtr0110939,FBtr0084021,FBtr0084022	2	4	12	106	3R	17027123	17027417	TATATGGTAGCATGCGTCG		59	17027487	17027505	GTAGATGTCGTCGAGATCG		59	NA	
Drosophila melanogaster	50	CG17193	FBgn0040571	FBtr0083838	1	1	1	149	3R	15865449	15875380	TATTACAGTGGTCACTCGT		57	15865318	15865337	GTTGATATAGTACTCCCGCT		58	NA	
Drosophila melanogaster	50	Pk92B	FBgn0014006	FBtr0083818,FBtr0083819	3	2	2	81	3R	15708426	15708446	CGATATGATCCTGGAGATGAC		59	15708486	15708573	GTACTCGTACTCGATATTAGCG		59	NA	
Drosophila melanogaster	50	CG6195	FBgn0038723	FBtr0083803	2	1	1	123	3R	15473741	15473760	GATTTGATGTGCTCAAGAGC		59	15473584	15473655	GTGAACTCATAGTTTGCCG		58	NA	
Drosophila melanogaster	50	Nup58	FBgn0038722	FBtr0083781	2	1	1	60	3R	15471785	15471803	GGGACAATAAGCAAGATGG		58	15471887	15471906	TTTATTATCTCGTCGGGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gukh	FBgn0026239	FBtr0089768,FBtr0100317	1	2	4	83	3R	14844133	14844151	AAGTCCAATTCTTCGACGG		59	14844197	14846661	ACGTTGATACCCTTCTTCAC		59	NA	
Drosophila melanogaster	50	CG31226	FBgn0051226	FBtr0083675,FBtr0083676	3	2	2	223	3R	14677345	14677363	TATCCTTGCTATCCTTGCG		59	14677087	14677158	CTTGCAAGAGATGTTCAGC		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG31229	FBgn0051229	FBtr0083663	3	1	1	299	3R	14494369	14494387	TCCGTTAATCCCAACATGG		59	14494719	14494737	CATGTAGTAGTCGATGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rpb4	FBgn0053520	FBtr0100273,FBtr0100275	2	2	5	95	3R	14079507	14079585	TGAGATTGGAGATCTGCCT		59	14079430	14079448	TAGTCCAAATACGACTGCG		59	NA	
Drosophila melanogaster	50	Ssdp	FBgn0011481	FBtr0083612,FBtr0083611,FBtr0083613	1	3	3	65	3R	14020957	14020975	AAGATCAAGGAGAGCATGC		59	14020910	14020928	GTAGTCCGGATGATCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CREG	FBgn0025456	FBtr0089896,FBtr0089897	3	2	3	177	3R	13219547	13219565	TTCCATGATCAGTGGACAG		58	13219255	13219273	AGGACCTCCATAGAAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Abd-B	FBgn0000015	FBtr0083382,FBtr0083385,FBtr0083384,FBtr0083381,FBtr0083383	1	5	5	82	3R	12755407	12755425	AATGCGTATGTTTCCAAGC		59	12755286	12755362	TGGAACCATATCTTGACCTG		59	NA	
Drosophila melanogaster	50	CG14889	FBgn0038443	FBtr0083299	1	1	1	184	3R	12391040	12391058	GAGATCGCGGTGATATAGG		59	12391315	12391401	GCCATATAAGTATTCGATGGTG		58	NA	
Drosophila melanogaster	50	CG14896	FBgn0038433	FBtr0083311	3	1	1	60	3R	12286761	12286779	ACACCACTAAAGAACGACC		59	12286719	12286737	TCCTCCGTTTCATTAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tara	FBgn0040071	FBtr0083258,FBtr0083257	1	2	2	60	3R	12083771	12083789	CAGGAGTTGCTACAAGGAC		59	12083813	12083831	GGAGAGTTTGAACATGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pnr	FBgn0003117	FBtr0083220,FBtr0083221	2	2	2	128	3R	11865150	11865168	CATTCAGACCAGGAAACGA		59	11865260	11865346	GGTTTGAGATCATGCTCCT		59	NA	
Drosophila melanogaster	50	c(3)G	FBgn0000246	FBtr0083196,FBtr0083195,FBtr0083194	2	3	3	107	3R	11617294	11617385	CGCAAGAGCTGAATAATATGC		59	11617207	11617228	GTAGAATCATAGATTTGGCCAC		58	NA	
Drosophila melanogaster	50	CG5623	FBgn0038357	FBtr0083197	1	1	1	60	3R	11592485	11592505	GTTTACTTCTTCGATGAGACC		58	11592445	11592463	CACAATTGATGAGCTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsc70-4	FBgn0001219	FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056	2	6	6	71	3R	11071531	11071549	GGTATCCTCAACGTGACTG		59	11071584	11071602	CTTGTCGTTGGTAATGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6966	FBgn0038286	FBtr0113236	2	1	1	92	3R	10908850	10908868	GTCAAGTACCTGGTACACC		59	10908559	10908577	GAAGTGACCCTTGTAGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	pr-set7	FBgn0011474	FBtr0082929,FBtr0082928,FBtr0082930	3	3	3	97	3R	10142502	10142520	CGTTTGATGAAGGTCACTC		58	10142581	10142670	AAGGGAACTCCTATTGTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	sqd	FBgn0086897	FBtr0082854,FBtr0082857,FBtr0082856,FBtr0082855	3	4	4	252	3R	9468818	9468901	AACGACTGAGAAGGAACTC		58	9468584	9468602	CTCATCGCTGATCTCTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	mthl12	FBgn0045442	FBtr0082746	2	1	1	91	3R	9180640	9180717	GGTTAAAGACTGGAATTCGTC		58	9180767	9180788	CTGTTAGGACGAACATTATCAC		58	NA	
Drosophila melanogaster	50	CG3942	FBgn0038008	FBtr0082561	3	1	1	60	3R	8080686	8080705	CGTTTATCGCGTTATCTGAG		58	8080726	8080746	CCAATTGAAGATACTGGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp313a3	FBgn0038007	FBtr0082617	1	1	1	84	3R	8063780	8063852	GATAGGCACGATTGTTGAC		58	8063714	8063734	GGCCTTATTAATGACAGAGGT		59	NA	
Drosophila melanogaster	50	CG4860	FBgn0037999	FBtr0082623	1	1	1	142	3R	8046859	8046877	GAACTCGGTCTCATGTCAG		59	8046605	8046623	AGGTACAGGTTATTCACGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12224	FBgn0037974	FBtr0082505	1	1	1	93	3R	7807394	7807412	GTTTGACTATTCGGCTGAC		58	7807264	7807339	GTCATGAACCTGTAGTATGTC		57	NA	
Drosophila melanogaster	50	glo	FBgn0037954	FBtr0089918,FBtr0089917,FBtr0089919	1	3	3	279	3R	7644430	7644448	AATGTGACTAATGGCTCGG		59	7643734	7643752	AGAACTCCTCGATTTGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12594	FBgn0037941	FBtr0082429	2	1	1	80	3R	7556031	7556110	ACATTAAGGGCTAAGAACGA		58	7556150	7556171	CTCCAGATAAAGATTGTGAGTG		58	NA	
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082455,FBtr0082453,FBtr0082456,FBtr0082454,FBtr0082452	1	5	6	156	3R	7419365	7419384	CCGAGAAAGATAATGGAGTG		57	7418220	7418238	TCTGTGTTCTGACCAAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	wkd	FBgn0037917	FBtr0082414,FBtr0082413	1	2	2	135	3R	7409665	7409685	GGCCTACTCGATATACAATCC		59	7409782	7409858	GTCCTGCAGGTATACATCG		59	NA	
Drosophila melanogaster	50	CG10898	FBgn0037911	FBtr0082410	1	1	1	127	3R	7384370	7384388	CTTCTGATGATCGAGGAGG		58	7384551	7384569	TTTAGACCAGTCTCTTCGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6672	FBgn0037875	FBtr0082371	2	1	1	97	3R	7039729	7039747	ATCTGTTCCTCTTTCTGCT		58	7039579	7039597	GAATGAGTCGGAGATCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	fau	FBgn0020439	FBtr0082306	2	1	4	75	3R	6602946	6602964	GAAAGTGGATTTACGACCC		58	6600778	6602907	TCTTCGTTCTCGTAACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	unc-115	FBgn0037733	FBtr0082095,FBtr0082094	3	2	4	108	3R	5515793	5516164	TTAGCGAGATGTACATCCG		58	5515557	5515575	TACTCCCGGAGTATCAGAC		59	NA	Nonspecific
Drosophila melanogaster	50	CG16789	FBgn0037712	FBtr0082071	1	1	1	80	3R	5393270	5393345	GATCGATCTGTTTAACGATACC		58	5393385	5393404	TAGATCATGTCCTCATAGGC		58	NA	
Drosophila melanogaster	50	ps	FBgn0026188	FBtr0082038,FBtr0111031,FBtr0111029,FBtr0111030,FBtr0082037,FBtr0111028,FBtr0111027	2	7	9	133	3R	5269786	5270772	CATATTCATCATGGCGAGAC		58	5270868	5270886	GACATCTTGACCCTAGCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Task7	FBgn0037690	FBtr0082045	2	1	1	108	3R	5237316	5237402	TGGCAATGATAGGATATGGTC		59	5237174	5237192	GACTGGAACATCACCAGAC		59	NA	
Drosophila melanogaster	50	CG9356	FBgn0037688	FBtr0082047	1	1	2	157	3R	5228688	5228706	TGTAATCAGCCTAAGTGCC		59	5228480	5228567	TAATGAATTCCAAGGCCCT		58	NA	
Drosophila melanogaster	50	Mst85C	FBgn0028708	FBtr0081969	3	1	1	61	3R	4877048	4877067	ACGGATGATATACCATCCAC		58	4877091	4877109	ATTTGATAGGCGGGATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nmdmc	FBgn0010222	FBtr0081996,FBtr0081997	1	2	2	288	3R	4868835	4868853	AATGTCAGTCTACCGATGG		58	4868498	4868583	GGCGAACTTCTTCAAAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0089782,FBtr0089781,FBtr0114459	3	3	8	82	3R	4660660	4661006	CATATACGGTACCCTACGAC		58	4660597	4660615	GTAGATGCTGTACTTGCTG		57	NA	
Drosophila melanogaster	50	hb	FBgn0001180	FBtr0081950,FBtr0081951	2	2	2	60	3R	4518943	4518961	TGTGTCAACAAATCCATGC		58	4518901	4518920	GGTACTGATACACAGAACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2767	FBgn0037537	FBtr0081822	3	1	1	89	3R	3832619	3832638	ATCTGCAACTGGACTATGTG		59	3832489	3832567	CCTTGTCGAGCTTAAAGCT		59	NA	
Drosophila melanogaster	50	CG1287	FBgn0037506	FBtr0081554	2	1	1	60	3R	3327004	3327022	CCCAAAGGATCGTTAAGTC		57	3326962	3326982	GGATCGTAAGGGAATTTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14607	FBgn0037488	FBtr0081575	3	1	1	60	3R	3068831	3068849	CTACAACGATTCCGATGGA		59	3068873	3068891	AGGATAATCCACTCCAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1162	FBgn0026564	FBtr0081669	1	1	1	60	3R	2580440	2580460	ACTTGAGCATATACTCCTTGG		59	2580400	2580418	TTTCATGCTCGATTTGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ccp84Ad	FBgn0004780	FBtr0081690	3	1	1	273	3R	2518877	2518895	CTACAAGAGAACCGTCCAG		59	2519132	2519150	GTAGGAGGTGTAGGTAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ccp84Ag	FBgn0004777	FBtr0081689	2	1	1	143	3R	2512464	2512482	TTCGGTATCTAGAGCAACC		58	2512804	2512822	GATCGTACTCCTCAACCTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG33097	FBgn0053097	FBtr0081735,FBtr0110852	3	2	2	90	3R	2191999	2192077	TCGAATGATTTCCAAGTCG		57	2191927	2191945	TTCTAGTGGTACTAAGGCC		57	NA	
Drosophila melanogaster	50	Obp83cd	FBgn0046878	FBtr0078584	3	1	1	151	3R	1934343	1934999	CATCACCAACATGGAAAGC		59	1935113	1935132	CATTGACAGGATAGTAGGCG		59	NA	
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078675,FBtr0078672	2	2	5	165	3R	1586675	1587378	AATTCGGACATCAAATCGTG		58	1586473	1586491	ATGACATCTACCTTGCAGC		59	NA	
Drosophila melanogaster	50	Tim17b1	FBgn0037310	FBtr0078784	2	1	1	142	3R	1126497	1126515	TGTGGTGTCCCATTATTCG		59	1126621	1126705	ATGCCGAAGAGTCAATCTC		59	NA	
Drosophila melanogaster	50	5-HT2	FBgn0013743	FBtr0078854,FBtr0078855,FBtr0112871	2	3	3	143	3R	452787	452805	AGTTTGGGACGCTATATGG		59	452912	452991	ATTGACCAGACCAAGAACG		59	NA	
Drosophila melanogaster	50	CG31522	FBgn0051522	FBtr0078940	2	1	4	60	3R	273408	273428	ATAGTGGTAAGTACCAGACCT		59	273368	273386	AAGGTTAGCCAAATTAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41468	FBgn0084029	FBtr0111210	3	1	1	106	3R	245351	245370	ATGTTTGTTGCATGACAGAG		59	245264	245282	TTCTTATACTGCTTGGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9772	FBgn0037236	FBtr0078952,FBtr0078953	2	2	4	89	3R	162252	162270	GTTTGCGGACAATTAGACC		59	162121	162199	GCTCCTGGATACTAGTCTG		58	NA	
Drosophila melanogaster	50	CG9776	FBgn0027866	FBtr0078956,FBtr0078955	2	2	2	110	3R	155851	155869	GTCCAAGAAAGACGAGGAC		59	155694	155715	GCATCTATTGTACTACGTTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	aux	FBgn0037218	FBtr0078965,FBtr0078966	3	2	2	143	3R	52283	52301	TTCTCTGCTCTATGCACAC		59	52405	52485	CTGTTCCATTATGCTTATCAGG		58	NA	
Drosophila melanogaster	50	snoRNA:Me28S-A30	FBgn0086081	FBtr0114357	3	1	1	66	3L	17996125	17996144	CTTACAGGTGTTATTGGGAC		57	17996078	17996096	TTTCTCAGACAGTTTCCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-1086	FBgn0083058	FBtr0113602	2	1	1	82	3L	833172	833193	CCAGAAATCAGAAATGTCTGTG		59	833111	833130	CTAACGATGCTAGTAAGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14455	FBgn0037175	FBtr0078543	3	1	1	61	3L	22680020	22680038	CTCTTTCAAGGTCATCCTC		57	22679977	22679995	TAAGGTCCAGGAACTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14457	FBgn0037174	FBtr0100669,FBtr0078517	2	2	2	126	3L	22672341	22672359	TTCTATCTCAACCGCATCC		59	22672446	22672528	TCTTAAATACCTGACTGTCCAG		59	NA	InUTR
Drosophila melanogaster	50	CG11404	FBgn0037169	FBtr0078513	2	1	1	150	3L	22541720	22541741	GAATATTCCTATTATCGGCCAG		58	22541850	22541923	CAAGGAGATGTGATAGATCTG		57	NA	
Drosophila melanogaster	50	CG7470	FBgn0037146	FBtr0078477	1	1	1	100	3L	21971467	21973414	GTCACAAGAATGTTGGTCG		59	21973478	21973496	GAAGATGACCAGTAGGACG		59	NA	
Drosophila melanogaster	50	mub	FBgn0014362	FBtr0078469,FBtr0078468,FBtr0078470	2	3	4	154	3L	21914292	21914310	AGATTCGCCAAATATCCGG		59	21914425	21918298	AGCAGTCTCCATTGATATTCTC		59	NA	
Drosophila melanogaster	50	Mkrn1	FBgn0029152	FBtr0078383,FBtr0078384	3	2	2	90	3L	21524869	21524890	CAGAGCCAGAATGAAATAATCG		59	21524616	21524634	TTGAAATCATCTCCAGCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7324	FBgn0037074	FBtr0078404	3	1	1	82	3L	21331902	21331979	CAAAGGGCTTATGAGAATCTC		58	21331840	21331859	TTTAGCTGGGTAAAGCTCTC		59	NA	
Drosophila melanogaster	50	CG5955	FBgn0036997	FBtr0078197	3	1	1	135	3L	20461344	20461421	GAATGTTACGATCCAACGG		58	20461520	20461538	ATCACTGGAAATCACTCCT		57	NA	
Drosophila melanogaster	50	CG6933	FBgn0036952	FBtr0074855,FBtr0074854,FBtr0074853	2	3	3	61	3L	20211888	20211906	TGTACCCATAACCGATGTG		59	20211845	20211863	TTCTTGCAACCCTCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Deaf1	FBgn0013799	FBtr0100666,FBtr0074882	1	2	2	219	3L	19812918	19812936	AAGTACAAGGACAAGTGGC		59	19821425	19821443	GTGTAAAGAGACGGACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33647	FBgn0053647	FBtr0091624	3	1	1	123	3L	19229813	19229831	CAGATGCTATCAAGTGTGG		57	19229984	19230002	ATCCCTTTGCGTAATACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6812	FBgn0036843	FBtr0075025	3	1	1	99	3L	19058397	19058415	GATAATGGAGAGGCTGGAG		58	19058478	19058562	CATGAAGCAAAGGAAGCAC		59	NA	Nonspecific
Drosophila melanogaster	50	CG14077	FBgn0036830	FBtr0075072	3	1	1	80	3L	18906645	18906663	AAACCTCTAACAGCGATCC		59	18906532	18906602	GTGTTGTGCAACAATTTGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG14074	FBgn0036818	FBtr0075061	1	1	1	60	3L	18860061	18860079	CCTCCTCTCCTATAAGCGA		59	18860103	18860121	GATTTGTCCACCTCTTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32202	FBgn0052202	FBtr0075051	1	1	1	135	3L	18675422	18675440	AAACTGTATGACAGGTGCC		59	18675600	18675618	CTCCGTGCTTATCTAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TORC	FBgn0036746	FBtr0075196	2	1	1	60	3L	17655909	17655930	GAAACAACAATAGCAGTAGTGG		59	17655870	17655889	GAAGTGGTTATTCCCAAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jon74E	FBgn0023197	FBtr0075207	3	1	1	81	3L	17541554	17541660	CATGAATGACGAATCCACTG		58	17541492	17541512	GTATTCACAGTCCTCATTGGA		59	NA	
Drosophila melanogaster	50	Nedd4	FBgn0036736	FBtr0075179,FBtr0075178	1	2	4	110	3L	17527654	17531772	AACAGTGATAACGACTCTGG		59	17531914	17531932	GATTCTGACATACGGGTCG		59	NA	
Drosophila melanogaster	50	Dab	FBgn0000414	FBtr0075318	1	1	1	124	3L	16715182	16715200	AGAAATCTTGGAAGCGTCC		59	16715288	16715370	TTTCTTGCGGAATCTTCGT		59	NA	
Drosophila melanogaster	50	Abl	FBgn0000017	FBtr0112790	2	1	2	168	3L	16622298	16624486	ATGAACTTAGAAGCCCTGC		59	16622148	16622166	ATGTAGTCGAACTGTGACC		59	NA	
Drosophila melanogaster	50	l(3)73Ah	FBgn0002283	FBtr0075311	3	1	1	78	3L	16582568	16582586	ATAACGCATCTCAAGAAGC		57	16582628	16582764	TGCACAGTATGTCGATCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12272	FBgn0036571	FBtr0075452	1	1	1	80	3L	16115389	16115466	GTGCCCAGTATTTATAGATTGG		58	16115505	16115525	CTTGAAGTAGCTGAAATCCAG		58	NA	
Drosophila melanogaster	50	CG17026	FBgn0036550	FBtr0075513	1	1	1	60	3L	15969358	15969377	CTTCGATATCATGAAGCCAG		58	15969400	15969418	TATCTCAGCTCTCAGTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11552	FBgn0036465	FBtr0075669	2	1	1	60	3L	15035384	15035404	CATCACCATCAAGGATTATGC		59	15035344	15035364	GTAGTAGGTATTTAACTGGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL39	FBgn0036462	FBtr0075672	1	1	1	95	3L	14991964	14991982	CTTGCAGCTTTATGTTGGG		59	14991714	14991907	CTGATTTGATATTGGGTCCAG		58	NA	
Drosophila melanogaster	50	CG33262	FBgn0053262	FBtr0075826	2	1	1	60	3L	13129590	13129610	TCTTGAGTATGAATCCCTGAC		58	13129631	13129650	ATAGGGCAGATAGTACTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6004	FBgn0036203	FBtr0076119	3	1	1	60	3L	11763355	11763374	AAGATAGTACGACCCAAGAG		58	11763314	11763333	GACGATTCAGTAGACAAAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18331	FBgn0036181	FBtr0076140	2	1	1	60	3L	11606151	11606169	CAAATGGCGATAACAGCTC		59	11606109	11606129	GATACTTCCTTCGTTGTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mob1	FBgn0036172	FBtr0089331,FBtr0089330,FBtr0089333,FBtr0089332	3	4	4	161	3L	11520315	11520333	CTAGTGGATCTTCCAGCTG		59	11518601	11518686	CCATAAGTACGTTCTGTTGC		58	NA	
Drosophila melanogaster	50	GlcAT-P	FBgn0036144	FBtr0100422,FBtr0076189,FBtr0076190	3	3	3	90	3L	11171623	11171758	AGTGCAGAGATATTCTCACG		59	11171552	11171570	AGGTTCGTGTTCTTGTAGC		59	NA	
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326	1	11	11	88	3L	9773789	9773875	CCTCATGAGATCTTTGTGC		58	9773927	9773945	TCATACTTGATCCAACGGG		59	NA	
Drosophila melanogaster	50	CG18177	FBgn0036039	FBtr0089410,FBtr0089411	3	2	3	141	3L	9721700	9721819	ACCCTGGACTTTATTAGATCAC		59	9721919	9721939	GATAAAGTTGAAGCGAGTGAG		59	NA	
Drosophila melanogaster	50	CG14174	FBgn0036036	FBtr0076402	3	1	1	60	3L	9713146	9713164	AGATTAGAACCTCCAACGA		57	9713188	9713206	CAATGTCTGGTGTTTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS9	FBgn0010408	FBtr0076423,FBtr0076424	1	2	3	162	3L	9504210	9504228	CTGGCTAAGATCCGTAAGG		59	9503662	9503680	CCTCAATCTTCAGACCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tequila	FBgn0023479	FBtr0076526	1	1	4	80	3L	9078337	9078356	AAGACACAGTTGGTTTACAG		57	9078396	9078481	GGCAGATAGTATCATAGTTTGG		58	NA	
Drosophila melanogaster	50	CG6372	FBgn0035915	FBtr0076638	3	1	1	95	3L	8612112	8612192	ATGCATATTGATGCCACCA		59	8612250	8612269	GATAAGAGTACGAGTGGGTC		58	NA	Nonspecific
Drosophila melanogaster	50	ImpE1	FBgn0001253	FBtr0076607	3	1	2	84	3L	8373009	8373027	CAATAGCAGTTGTCTGGAG		57	8373075	8373093	ATACTTACGTCCCAGACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ImpE1	FBgn0001253	FBtr0076607,FBtr0076606	1	2	2	88	3L	8368102	8368120	AACATCGAGAAAGCAACCT		59	8372245	8372263	CTGTGAAGATGATCAGCAG		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG8546	FBgn0035785	FBtr0076859	1	1	1	80	3L	7450152	7450231	GAGCGGAAGGTATTATTCCC		59	7450272	7450292	TATAACCATCCTCCACATTCC		58	NA	
Drosophila melanogaster	50	CG8563	FBgn0035777	FBtr0076852	2	1	1	109	3L	7387919	7387937	CACTGGAACTATCAGGGAG		58	7388097	7388115	TTGAATTCCAGATACCGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	mus312	FBgn0002909	FBtr0110926,FBtr0076840,FBtr0076839	3	3	3	83	3L	7323266	7323285	TGATGAAGAGAAGTCCACTG		59	7323328	7323408	GATTTATAATCTTCCTTGGCGG		59	NA	InUTR
Drosophila melanogaster	50	sgl	FBgn0010851	FBtr0076938	3	1	1	205	3L	6955021	6955039	ATGAGGTGGTGAAGAAGTG		59	6954351	6954369	CACAATCTTGTTGGACTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32392	FBgn0052392	FBtr0076948,FBtr0076947	3	2	2	265	3L	6750547	6750630	CAAACAGGAAGAATTCCTGG		58	6750301	6750319	AGACGCTCTTCATAAGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14911	FBgn0035701	FBtr0076966	3	1	1	84	3L	6477655	6477797	GTGGCGAGAAATACAATTACC		59	6477843	6477861	TCCGAATAGTAAGCACTGC		59	NA	
Drosophila melanogaster	50	Jon65Aiv	FBgn0035664	FBtr0077040	1	1	1	96	3L	6032821	6032839	TCTCCAACTCCTACTCGAC		59	6032899	6032917	TGAAGATTGGTAGCCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dhc64C	FBgn0010349	FBtr0073359	3	1	2	82	3L	4807821	4807899	TGGATAAAGATTTCCTCGGA		58	4807758	4807776	AAGAGTAGTTCTGTACGCG		59	NA	
Drosophila melanogaster	50	CG11357	FBgn0035558	FBtr0073310,FBtr0113143,FBtr0113142	1	3	3	147	3L	4551933	4552115	CATATCGTTCCAAATGGCG		59	4552224	4552244	TCTACCCAGAAGTATTTGGAC		58	NA	
Drosophila melanogaster	50	CG15021	FBgn0035544	FBtr0073301	2	1	1	165	3L	4437763	4437781	TCTGAGTATTTGCCACCTC		58	4437910	4437928	GATAAGTAGGTCCTGGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr64e	FBgn0045476	FBtr0073199,FBtr0073200	3	2	2	94	3L	4034471	4034489	TCTGAAGTTGCCCAAAGAG		59	4034547	4034625	TCATAATGTGCTCCACCAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	3	9	15	80	3L	3083795	3084813	CTCGCCACTTATATGAATCGA		59	3084852	3084873	CAAATTAAGTAGTGAGAACCCG		59	NA	
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996	2	6	15	81	3L	3083796	3085208	TCGCCACTTATATGGTCAC		59	3085252	3085271	TATGGTGCATAGAAGTTGGG		59	NA	
Drosophila melanogaster	50	CG1271	FBgn0035392	FBtr0072986,FBtr0072988,FBtr0072987	3	3	4	226	3L	3054470	3054549	CATATGATTAGGGTTGATGGC		58	3054737	3054755	GTTTCGTACTCCTTGGGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1893	FBgn0035390	FBtr0073005	2	1	1	95	3L	3045791	3045809	AACATCAAGAACACATGCG		59	3045123	3045733	GCTCAATACCTTGAAGTTGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG33232	FBgn0035347	FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920	2	4	4	87	3L	2495884	2495902	ACATTAGCTCCGAGTACAC		58	2495951	2496030	GCATTATGACCATATGACTCC		58	NA	
Drosophila melanogaster	50	CG13800	FBgn0035338	FBtr0072891	2	1	1	60	3L	2406755	2406775	CTTGATGTTACTACTAGCACC		57	2406796	2406815	TATCGTTAGAGGTTGGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13802	FBgn0035330	FBtr0113127,FBtr0072886	2	2	2	60	3L	2299266	2299774	AAAGCTGAGTGACCTTATGG		59	2299797	2299815	CAGGATGAAGTTGATGCTC		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG13802	FBgn0035330	FBtr0113127,FBtr0072886	1	2	2	80	3L	2299260	2299768	TTACCTAAAGCTGAGTGACC		59	2299811	2299829	CTCATCGAACAGTACAGGA		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	ecd	FBgn0000543	FBtr0072903	2	1	1	60	3L	2265109	2265129	CAACGTATACGAATGAATCCC		58	2265069	2265087	CAATGCACGACTGTATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32301	FBgn0052301	FBtr0072875	2	1	1	83	3L	2245337	2245358	GATTCCAAGAGTACAACATGAG		58	2245401	2245471	TCATAGCCATTTGAAACACC		58	NA	
Drosophila melanogaster	50	CG7995	FBgn0035266	FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767	2	5	5	157	3L	1743701	1743719	CATCTCCACGTACTTCTCG		59	1743909	1743927	TTACATCCGTGATGTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33230	FBgn0053230	FBtr0072757	3	1	1	60	3L	1620199	1620217	TACCTCCAAGAGTGTATCC		57	1620241	1620259	TCTATGCAGCTAGATGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2199	FBgn0035213	FBtr0072722,FBtr0072721	3	2	2	60	3L	1340536	1340554	CGTAGACATTCTGGGTACG		59	1340494	1340514	CTTAGGTCCTTCAACCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13882	FBgn0035126	FBtr0072509	3	1	1	92	3L	290251	290271	CTAAATCTTGAGGTTGCAGTG		59	290325	290765	GAACTCCGCTTTAACACTG		58	NA	
Drosophila melanogaster	50	CG13879	FBgn0035120	FBtr0072502	3	1	1	61	3L	258924	258944	AAACCCTTAAGATCCCAAAGG		59	258967	258985	CAGCGAATCTACCTTCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	thoc7	FBgn0035110	FBtr0072527,FBtr0072526	3	2	2	142	3L	212556	212635	TAGTGGAGATGAATGACGA		57	212367	212450	GTACATGATGGGATTGCTG		58	NA	
Drosophila melanogaster	50	CG6845	FBgn0035099	FBtr0072473,FBtr0072472	1	2	2	108	3L	148743	148762	GGTTTATTGCGGTAAATGCT		59	148832	148904	CGAAGAGTCGTCTACTTCAG		59	NA	
Drosophila melanogaster	50	CR14499	FBgn0034317	FBtr0086751	2	1	1	60	2R	14075373	14075392	GAAGAACTTCTTCGGATCGT		59	14075414	14075433	TTGCTAAAGCTCAGAAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	zip	FBgn0005634	FBtr0072398,FBtr0072399	2	2	4	100	2R	20885210	20885808	TGCTCATTAACTTCTCGGT		58	20885128	20885149	CATCTTCAATCCATTGACTACC		58	NA	
Drosophila melanogaster	50	RpL19	FBgn0002607	FBtr0072406,FBtr0072405	3	2	2	63	2R	20856642	20856660	GATCGCTAACACAAACTCG		58	20856531	20856549	CTTGATGATCAGACCATCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Reg-5	FBgn0015801	FBtr0072427	1	1	1	195	2R	20676665	20676683	CCTCTACTCAACATTCGCT		59	20676360	20676506	AATCGATGACCAGATCAGC		59	NA	
Drosophila melanogaster	50	CG30161	FBgn0050161	FBtr0072333	3	1	1	62	2R	20551201	20551219	ACTATCAGTAAGCCAAGCT		57	20551157	20551177	CCTAATTTCTGGATTGCTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mAcR-60C	FBgn0000037	FBtr0072368,FBtr0072367	3	2	2	146	2R	20271139	20271461	GAGATCAAACAGCAGTGAC		58	20271011	20271029	GTCATGTAGACACTCTCCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG3209	FBgn0034971	FBtr0072178	2	1	2	116	2R	19958425	19958446	CCACAATAAGCAATATAAGCCC		59	19958521	19959527	GTTAACCACACTACCAAAGAG		58	NA	
Drosophila melanogaster	50	CG13561	FBgn0034906	FBtr0072243	3	1	1	138	2R	19692161	19692182	AGCCCTTTCTCTACAATATCTG		59	19691983	19692062	ACTATTTCCGGTGGAATCG		59	NA	
Drosophila melanogaster	50	l(2)efl	FBgn0011296	FBtr0072100	3	1	2	282	2R	19572570	19572588	AAAGCATGAGGAGAAGCAG		59	19572244	19572262	TAACTAACACTGAAGGCGG		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG4019	FBgn0034885	FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103	3	4	4	214	2R	19495764	19495783	ATCGAGTTCGTAATCACCTC		59	19495489	19495507	TAGATCCAGTTGCTCTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpL22-like	FBgn0034837	FBtr0072049	1	1	1	60	2R	19135049	19135068	ATTTGGCCATGAAAGAATCG		59	19135008	19135026	GAGACCAACTTCTGGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13516	FBgn0040658	FBtr0100554	3	1	1	80	2R	18557546	18557655	TCTGTTTGGTCGGATTCTG		59	18557698	18557717	GACAATAGTGGTTTCCAGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG34445	FBgn0085474	FBtr0112749	1	1	1	71	2R	18535712	18535730	GAACTAAACCGCATTGTGG		59	18535599	18535620	CGGCACATAGTAATTAAAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30279	FBgn0050279	FBtr0071768	1	1	1	60	2R	18066732	18066752	ATGACTCGGCTAAAGATTCAG		59	18066774	18066792	TTGATAGTCTGAGGCACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4363	FBgn0034663	FBtr0071740	3	1	1	101	2R	17722058	17722138	GATTCCAGCAAGGATTCCA		59	17721975	17721996	GGATTTCACATAGCAATACGAG		59	NA	
Drosophila melanogaster	50	lox2	FBgn0034660	FBtr0071745	2	1	1	83	2R	17677614	17677632	TTTGGAGGACAGTAACTGC		59	17677494	17677568	CAGTTAATGGAAATGCCCTG		59	NA	
Drosophila melanogaster	50	CG15675	FBgn0034648	FBtr0071665,FBtr0071664	1	2	2	60	2R	17554567	17554588	TAAGCAGGATTCTACTGAAGAC		59	17554609	17554627	GCTGGATTAAACTTCGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18870	FBgn0042180	FBtr0071688	3	1	1	125	2R	17503366	17503385	GTATTGGAACTGCATAACGG		58	17503193	17503211	CTATCATCGTAGTGCACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10069	FBgn0034611	FBtr0071590,FBtr0071589,FBtr0071591	1	3	3	80	2R	17172236	17172254	ATCTATCAGATGTGAGCGG		58	17172298	17172372	GATACATCAGCAGAATGGG		57	NA	
Drosophila melanogaster	50	CG4286	FBgn0034601	FBtr0071627	2	1	1	61	2R	17065906	17065924	ACATCGAGGAAGAGTTCCT		59	17065863	17065881	CTTCGGATTCATGGGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10543	FBgn0034570	FBtr0071524,FBtr0071523,FBtr0071525	3	3	3	140	2R	16891581	16891599	CTGCAACTATTGCGATCAG		58	16891759	16891844	AAGCTACCCATATCTTCTTCG		59	NA	
Drosophila melanogaster	50	CG12484	FBgn0086604	FBtr0112775,FBtr0112776	2	2	3	89	2R	16359762	16359781	ATACACTCATTCCCGTTAGC		59	16359833	16361278	AACTGAGCTCAGTCTTCTG		58	NA	
Drosophila melanogaster	50	CG11200	FBgn0034500	FBtr0086300,FBtr0086299	1	2	2	80	2R	16193965	16193984	GTATCAGTACCTGGGAATCG		59	16193841	16193925	GGTTGTTTATAAAGTGCCACTC		59	NA	
Drosophila melanogaster	50	CG13869	FBgn0034486	FBtr0086323	3	1	1	68	2R	16126324	16126342	GAATGGTCAGGTGGATGAG		59	16126220	16126293	TGATGAGGTCTTAACAACCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	Fak56D	FBgn0020440	FBtr0086542,FBtr0086543,FBtr0114605,FBtr0086544	3	4	5	84	2R	15322745	15322828	TGGTATTAATACCGCTGAGAG		59	15322681	15322700	CCAAATCGTGAACTCTAGGT		59	NA	
Drosophila melanogaster	50	CG15086	FBgn0034374	FBtr0086650,FBtr0086648	2	2	4	95	2R	14570958	14570976	GGAAATGAATGTGGATGCG		59	14570540	14570899	GAACAAGTTTGAGCTGTCC		58	NA	
Drosophila melanogaster	50	Atg7	FBgn0034366	FBtr0086711,FBtr0086712	2	2	2	153	2R	14511077	14511156	TAGAAATCTGCTGTCCTGG		58	14510942	14510960	TTTCAATCTCTGAGCAGCT		58	NA	
Drosophila melanogaster	50	lolal	FBgn0022238	FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778	1	4	4	80	2R	14042986	14043404	TCACAGATGTAACACTCGC		59	14042924	14042942	TAAAGTAGGGACTGCAAGC		59	NA	
Drosophila melanogaster	50	CG18186	FBgn0034255	FBtr0086896	2	1	1	60	2R	13521535	13521556	CATAGTGGAGAAGTTTCTAGGA		58	13521496	13521514	CTTGGTCAGATACTGAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rhi	FBgn0004400	FBtr0086897	3	1	1	104	2R	13519484	13519503	AGAGCTTGAGGATCATTGTG		59	13516193	13516212	TTGGAGTCGATTATGTTGTG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7755	FBgn0034105	FBtr0087182	3	1	1	63	2R	12170027	12170045	GTTCATGTGGACAATCAGG		58	12169982	12170001	GATCATTGCAGATCTTGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30095	FBgn0050095	FBtr0087224	2	1	1	148	2R	12011642	12011660	CATGAAATACCGGGTTGAC		58	12011833	12011852	TTTCCACTTCAACATCTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Mlf	FBgn0034051	FBtr0087294,FBtr0087295	1	2	4	91	2R	11826014	11826032	CTGTGTAATCCAGGAGCAG		59	11825374	11825959	CAATGTTGCCACTGTTCTG		59	NA	
Drosophila melanogaster	50	CG30084	FBgn0083919	FBtr0113484,FBtr0111048,FBtr0100387,FBtr0087315	3	4	6	157	2R	11652754	11660560	ATAATGTGTACCGAGGTGC		59	11651322	11652635	GATAAAGGGTCCTCTGATCTG		59	NA	
Drosophila melanogaster	50	Flo	FBgn0024754	FBtr0087352,FBtr0087351	2	2	2	201	2R	11454667	11454755	CTGAATCGATCAGGATTCG		57	11454423	11454441	ATCGTGATCTTCTTAGCCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG34365	FBgn0085394	FBtr0112588,FBtr0112589,FBtr0112590,FBtr0112587	3	4	4	99	2R	11344307	11350808	TATCGAGGAAGAAACGTCAG		59	11350870	11350888	CTCATCCGGATTGGATTCC		59	NA	
Drosophila melanogaster	50	CG34123	FBgn0083959	FBtr0114580,FBtr0110832,FBtr0110831,FBtr0110833,FBtr0113485	1	5	6	98	2R	11162730	11162811	CAACGAGTTGCTGATTTGG		59	11162650	11162668	GATACGAGTGATTTGGCCA		59	NA	
Drosophila melanogaster	50	hbs	FBgn0029082	FBtr0087414,FBtr0087413	3	2	2	129	2R	10924646	10924867	TTTGACTGTCCTGTATGCTC		59	10924959	10924977	TATGGACCAGCTAATTCGG		58	NA	
Drosophila melanogaster	50	CG10249	FBgn0027596	FBtr0087429,FBtr0112929,FBtr0087431,FBtr0087430	3	4	4	90	2R	10790219	10790298	GACAGTAATGGCAACACAG		58	10790147	10790166	CATCGCAAACCTTAGAATCC		58	NA	
Drosophila melanogaster	50	Cyp6a22	FBgn0013773	FBtr0087450	2	1	1	60	2R	10759575	10759595	AAACAGATCCTCATACAGGAC		59	10759616	10759635	GCTCATTGTGATACATTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10205	FBgn0033970	FBtr0087447,FBtr0087446	2	2	2	102	2R	10720445	10720679	CAATCATCGGCTAATGCTC		58	10720745	10720763	TATGCTGATCACATCCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsc70-5	FBgn0001220	FBtr0087568	3	1	1	76	2R	10141098	10141118	CATAGTCCACGATACTGAGAC		59	10140982	10141060	TCTTTAGCTTCTCGCACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG16935	FBgn0033883	FBtr0087622	2	1	1	66	2R	9748392	9748410	AATTGCCGAATTGAAGCAG		59	9748344	9748362	AATTTCGGCCTCTGTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30484	FBgn0050484	FBtr0087639	2	1	1	60	2R	9734917	9734936	TAAGGAGAACAATGGAAGTG		57	9734959	9734977	TTGTCCTGCTTAGTCATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr50Ca	FBgn0033867	FBtr0087629	3	1	1	163	2R	9661772	9661852	CCTCATATGAGGACATGCA		58	9661979	9661997	GATCCTAGAGTGGGTTTGG		59	NA	
Drosophila melanogaster	50	PR2	FBgn0013955	FBtr0087777,FBtr0087776	2	2	2	86	2R	9036510	9036531	GTGAAACCTATTTCTGTGAAGG		59	9036383	9036464	ATCAATCATCGACCTAGCAC		59	NA	
Drosophila melanogaster	50	vg	FBgn0003975	FBtr0087785	2	1	1	81	2R	8774680	8774700	GGTGCCTACTATCCATATCTG		59	8774743	8778987	ACAAATCCTGGTTGAACCT		59	NA	
Drosophila melanogaster	50	Dgkepsilon	FBgn0020930	FBtr0087853	1	1	1	82	2R	8646836	8646912	CAAGCAAATAAGGCTACAAGTC		59	8646955	8646973	GAATATCCGCTGGACTCTG		59	NA	
Drosophila melanogaster	50	CG33792	FBgn0053792	FBtr0091796	1	1	1	129	2R	8520422	8520440	TGGATGGTGACATAAAGGA		57	8520631	8520649	GTCAAATGGCTAATAGCGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8569	FBgn0033752	FBtr0087940	1	1	1	145	2R	8407930	8407948	GTTGGTATTTGCCAAGCAG		59	8408115	8408135	TGGGTGTAATATCACGTTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8828	FBgn0033740	FBtr0087948	2	1	1	109	2R	8355064	8355146	AGACCAAGAACATTCAAACC		58	8354974	8354994	CTGGTCGTAGTTCTTATTCAG		57	NA	
Drosophila melanogaster	50	Or49a	FBgn0033727	FBtr0087918	2	1	1	73	2R	8282206	8282224	ATCATATCCCTCGACACCT		59	8282319	8282337	ACAGTTTGTCGTATAACCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17739	FBgn0033710	FBtr0087893	2	1	1	80	2R	8194961	8195075	AGGTATAATGTTAGCCTCAGTG		59	8195116	8195134	GTCACCACTCTCCAAATCC		59	NA	
Drosophila melanogaster	50	CG30034	FBgn0050034	FBtr0088097	3	1	1	196	2R	7405814	7405832	TGCTGAAAGCTCAATAAGG		57	7404232	7404250	TAATGATCTTGGTCAGGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	inv	FBgn0001269	FBtr0088070,FBtr0088067	2	2	4	107	2R	7394460	7394532	TATTTATGGAGTATCCGCCG		59	7394602	7394620	ACAATCATAGCTCTTCGGG		59	NA	InUTR
Drosophila melanogaster	50	CG9027	FBgn0033631	FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897	1	4	4	188	2R	7269617	7269636	GATAATACCCAGGTCAAGGG		59	7269385	7269466	ACCGTGATCAACCTTATCG		59	NA	
Drosophila melanogaster	50	CG13213	FBgn0033609	FBtr0088180,FBtr0088178,FBtr0088179	1	3	3	80	2R	7174159	7174232	CAGGAAATTATGGACTCACCT		59	7174099	7174118	TATGATGCGGGATTCATCTG		59	NA	
Drosophila melanogaster	50	Taf5	FBgn0010356	FBtr0088240	1	1	1	60	2R	6766670	6766688	TCTGTACCCAATTCTGGTG		58	6766628	6766646	CTTCTCCCTTAGTCCACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CPTI	FBgn0027842	FBtr0088308,FBtr0088307	2	2	2	114	2R	6360063	6360081	ATCTTCATGAACCTCACCG		59	6359708	6359985	CCTGAACCATGATAGGCTG		59	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	3	9	9	198	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349188	6349206	CTTAGTACAGTCCACAGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CCS	FBgn0010531	FBtr0088424	3	1	1	125	2R	6009403	6009421	CTGGGACATAATCGGAAGG		59	6009235	6009253	CGAGCAATTATACCACACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30365	FBgn0050365	FBtr0088773	2	1	1	60	2R	4247600	4247618	GAGCCTAGATCATAGCGAG		58	4247558	4247577	GATATCCCTCGTTAGTTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lig	FBgn0020279	FBtr0100575,FBtr0088775,FBtr0088776,FBtr0088774	1	4	4	80	2R	3961935	3961953	TGCCATACTATCAGCAACC		59	3961997	3962987	AATATCCCTGCACATGTGG		59	NA	
Drosophila melanogaster	50	CG1946	FBgn0033216	FBtr0088929	2	1	1	97	2R	3603047	3603066	AAATGTTTGTGCGTAGTCTG		59	3603123	3603215	GAATAACCAACCATTACCTTCC		59	NA	
Drosophila melanogaster	50	CG17985	FBgn0033199	FBtr0088946	1	1	1	200	2R	3539848	3541990	TGACGAAGCCAATATGGAG		59	3539666	3539684	TAGACCAAGGGTATGACGA		59	NA	
Drosophila melanogaster	50	CG1602	FBgn0033186	FBtr0088960	3	1	1	86	2R	3405554	3405572	TAGCAACGATGAAGAAGGG		59	3405429	3405448	TCTATCAGGTCGGTAGTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111052	2	1	60	98	2R	3236476	3242402	CAGTACCCTTCTTTAGATGGT		58	3236398	3236416	TGAGAGTACCAGAGACCTG		59	NA	
Drosophila melanogaster	50	Gadd45	FBgn0033153	FBtr0089049	2	1	1	240	2R	3136988	3137006	GATCGATATGGCCATGGAG		59	3137209	3137228	CTTGATCACGTAGATGTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12831	FBgn0033141	FBtr0089057	3	1	1	74	2R	2961010	2961028	CAATTACGCATCCATCAGG		58	2960954	2960974	GAATTGGTGGATAACCTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30159	FBgn0050159	FBtr0089761,FBtr0089760	1	2	2	157	2R	2880914	2880932	TTTCCCGATCTTCACTAGC		59	2881053	2881071	AGACAACAAAGTCCTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eb1	FBgn0027066	FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130	3	5	5	160	2R	2642342	2642416	CAAATCAGGTGATGGATATGC		59	2642600	2642619	AGTCGCATATAAGATGTCCA		58	NA	
Drosophila melanogaster	50	jing	FBgn0086655	FBtr0114364,FBtr0114363,FBtr0086104,FBtr0114365	1	4	5	184	2R	2506076	2506094	GTTTGACTTCTTCGACACG		59	2506242	2506321	ACTCGTCGGAAATGATCTC		59	NA	
Drosophila melanogaster	50	CG14470	FBgn0033046	FBtr0086049	2	1	1	60	2R	1816189	1816208	ACTTACAGCTACCATTTCGG		59	1816231	1816249	GGTACTTGTTACTGGCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10396	FBgn0033020	FBtr0086089	2	1	1	60	2R	1241894	1241915	TTATACCGATATAGCTTCTGCC		59	1241936	1241954	TCCATTCGGGTGTAATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pncr003:2L	FBgn0047133	FBtr0080921,FBtr0080920	1	2	2	80	2L	16840562	16841349	CTAGTAACCTAAGCCAGATGAC		59	16841390	16841408	CCATCAAAGTGCTCATCCT		59	NA	
Drosophila melanogaster	50	CG17494	FBgn0040011	FBtr0111253,FBtr0111252,FBtr0111254	1	3	3	158	2L	22477292	22477310	CTTGACGATTATGACCACG		58	22477491	22477509	GCCTTCTTCTAAATCGGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5929	FBgn0032982	FBtr0085963	3	1	1	81	2L	22189795	22189813	TCAGTCCGCTTAATCTACG		58	22189547	22189750	TTATTTAAAGCGGCTGCAG		58	NA	
Drosophila melanogaster	50	CG41432	FBgn0083999	FBtr0111264	2	1	1	174	2L	22011123	22011141	TAATGAACCTTGGCATCAC		57	22011279	22011297	GACTTTATACACTCGCCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1416	FBgn0032961	FBtr0085903,FBtr0085904,FBtr0085905	3	3	3	114	2L	21759359	21760490	AAGAAACTTCATCCAGCAC		57	21760568	21760586	GTCTGTTTGATGCTATGCC		58	NA	
Drosophila melanogaster	50	CG2201	FBgn0032955	FBtr0100510,FBtr0085921,FBtr0085922,FBtr0100511,FBtr0085923	2	5	5	90	2L	21617547	21617567	AGCGATGCGATAGTAATAGTC		59	21617416	21617496	TATATTCGCAGAAGGACCTC		58	NA	
Drosophila melanogaster	50	His1:CG33843	FBgn0053843	FBtr0091847	1	1	1	69	2L	21501966	21501984	AATTTAAAGGAACGTGGCG		59	21502016	21502035	CGCATTTATAAGTGGCAGTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His2B:CG33894	FBgn0053894	FBtr0091898	1	1	1	61	2L	21472897	21472915	AAGAACATCACCAAGACCG		59	21472854	21472872	TAGATGGCATAGCTCTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr39a	FBgn0041244	FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510	1	4	4	89	2L	21297292	21297310	AAACAGCAAAGATGCTGAC		58	21297471	21297489	TCTGTCGAAGGTTCTTGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31678	FBgn0051678	FBtr0081402	3	1	1	106	2L	20664111	20664129	CGGTTATACTTGACGGGTC		59	20663904	20664041	ATCGTTTATTTGCATGGGC		59	NA	
Drosophila melanogaster	50	cdc23	FBgn0032863	FBtr0081362	2	1	1	60	2L	20461031	20461049	AATGCCTAGACTCAGAGGA		59	20461133	20461151	CAGTCAATCGTCTTCAGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40341	FBgn0058341	FBtr0100675	3	1	1	60	2L	20248395	20248413	TATGGCATACACTTAGGCG		59	20253474	20253494	GATTTCTTACTCTCATTCCGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	pr	FBgn0003141	FBtr0089396,FBtr0089395	2	2	2	86	2L	20074323	20074778	CTATACAGTTGAGATAACCGTC		57	20074258	20074277	TCTATAGCCTCTTTCAGCTC		58	NA	
Drosophila melanogaster	50	lok	FBgn0019686	FBtr0081330,FBtr0081328,FBtr0081329	3	3	3	286	2L	20063602	20063680	CTATTTACTTGCCTGAGTGG		57	20063929	20063947	TCAAGGAAGTTCTCCTCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13081	FBgn0032804	FBtr0081252	2	1	1	107	2L	19541151	19541170	CTAAGATTCCTGAGCTAGCC		59	19541302	19541320	TCTTAAGCAATTGGAGCAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)37Cd	FBgn0086445	FBtr0081156	2	1	1	109	2L	19127557	19127575	CTATCCATAACCGTGAGGC		59	19127648	19127723	TCACAAAGCGTTTCAAAGG		59	NA	
Drosophila melanogaster	50	mib2	FBgn0086442	FBtr0081142	3	1	1	100	2L	19037964	19038095	TCAAGTTGGAGTTCGTCAC		59	19038159	19038177	GGTGATAGTTGGGACACTG		59	NA	
Drosophila melanogaster	50	mRpL13	FBgn0032720	FBtr0089318	3	1	1	91	2L	18858456	18858963	ACCACCCAATGAATGACTG		59	18858383	18858401	GTAAACCCTCTTCACCCAC		59	NA	Nonspecific
Drosophila melanogaster	50	Faf	FBgn0025608	FBtr0081126	2	1	1	79	2L	18706846	18706864	CAGTTGTATTCAAGCTGCC		59	18706728	18706803	GTGATAAACGTCAAGCACC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	elfless	FBgn0032660	FBtr0081046	3	1	1	82	2L	18010982	18011002	CCAAATGAGTATTACGGAGAC		58	18010852	18010938	CTGGAATACTCCAACAGGA		58	NA	
Drosophila melanogaster	50	beat-IIIc	FBgn0032629	FBtr0080971,FBtr0080972	1	2	2	89	2L	17191092	17193535	GATTGTTGCGTATCTTCCG		58	17191021	17191042	CAATTAACCCGAACATAGTCTC		58	NA	
Drosophila melanogaster	50	CG6304	FBgn0032624	FBtr0080955	1	1	1	60	2L	17012791	17012810	TTACAAGAGGGAACAACCAG		59	17012750	17012770	GTTGCTCATGTTACTGTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080903,FBtr0080902,FBtr0080899	3	3	13	99	2L	16774774	16774792	AAGTGTAACGAGACTCTGG		58	16774855	16776278	GTTCGAAACCGTTGTACTC		58	NA	
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080905,FBtr0080897,FBtr0080907	1	3	13	80	2L	16777374	16777393	TGAAGGTATCCGTATTTGCC		59	16777436	16778404	TTCAGGATTTGATAGCGCA		59	NA	
Drosophila melanogaster	50	CG13278	FBgn0032602	FBtr0080933	3	1	1	80	2L	16758783	16758802	AGGCCTTTAATCAACCAGAG		59	16758665	16758740	GACGCTCTTCAATCATCGA		59	NA	
Drosophila melanogaster	50	CG18109	FBgn0028901	FBtr0080786	2	1	1	60	2L	15786031	15786049	GCCGATGGAATAAGTACCT		58	15786073	15786091	GCTTTGGCGATACTATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gli	FBgn0001987	FBtr0080769,FBtr0080766,FBtr0080765,FBtr0080768,FBtr0080767	3	5	5	92	2L	15758069	15758149	TAGATATGGCAATCCGACG		59	15757995	15758016	GTGGTATTGATGTTCAAGTACC		59	NA	
Drosophila melanogaster	50	CG4691	FBgn0028870	FBtr0080670	2	1	1	75	2L	14761166	14761185	TCAAAGGTATACGATGCCTG		59	14761223	14761241	TCTGAAACTCTGGATCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tam	FBgn0004406	FBtr0080571	1	1	1	92	2L	13824864	13824882	TTTCATGACGAACTGGAGG		59	13824731	13824749	ATGAAATACCTCTGCCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	B4	FBgn0023407	FBtr0080514,FBtr0080513	2	2	2	127	2L	13535023	13546925	CAGTCCCTCTTAAAGGCTG		59	13534914	13534932	TCTTTGTTGACTTCGTGGA		59	NA	InUTR
Drosophila melanogaster	50	CG9426	FBgn0032485	FBtr0080484	3	1	1	108	2L	13217750	13217768	TAGATTCAGCATGGGTGTG		59	13217601	13217678	TGTCACTGGATTGAAGCTG		59	NA	
Drosophila melanogaster	50	CG9928	FBgn0032472	FBtr0080496	3	1	1	60	2L	13142595	13142613	GATACCGATAGATCCGCAG		59	13142553	13142572	TGTGTATAAACTGGAATCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5122	FBgn0032471	FBtr0080431	2	1	1	125	2L	13133189	13133207	AAATCTTTGGTACGGTTCG		58	13133384	13133403	CACTTTGGGAATAAATTGGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15485	FBgn0032442	FBtr0080412	2	1	1	60	2L	12668940	12668958	AGGATCTGGGAGTTAATGG		58	12668898	12668916	CTGGCATAGAATTGCTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31763	FBgn0051763	FBtr0080356	1	1	1	184	2L	12373889	12373907	TACAACAAACTAAGCTCGG		57	12374055	12374073	CAATACGTTGCCGTTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rho-6	FBgn0032415	FBtr0080359,FBtr0080360	3	2	2	233	2L	12131043	12131063	CTTTATAGGTATCTGCCTGGA		58	12130762	12130780	AACAATATCAGCAGGGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33129	FBgn0053129	FBtr0080169	1	1	4	106	2L	10968579	10968708	GCTTCTGAAAGCTATAAACGAC		59	10968494	10968512	GTTCTTCGTTCAGATTCGC		59	NA	
Drosophila melanogaster	50	CG12517	FBgn0032311	FBtr0080144	2	1	1	62	2L	10870276	10870295	ATCATCTGTATCGAACGCTC		59	10870320	10870338	ATTATCCGTCCAGGATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12299	FBgn0032295	FBtr0080113	2	1	1	103	2L	10739984	10740003	AGACTCTGACATGTACTACG		58	10740069	10740087	CATCGGTGTAAACCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7329	FBgn0032271	FBtr0080131	3	1	1	129	2L	10630166	10630184	TATGCGATTCTACTGGCAG		59	10629997	10630015	TTGCATTTGGAGGTAGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	w-cup	FBgn0032269	FBtr0080132	3	1	1	60	2L	10577457	10577476	ACGAAATAACTAGGAAACCC		57	10577416	10577435	TTCTCGTTACTGGAAATGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31716	FBgn0051716	FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012	1	6	6	83	2L	10400605	10400623	AAGTCGAAGGATGCTTACC		59	10400669	10400743	ATAGCGCATCTGTTACTCTG		59	NA	
Drosophila melanogaster	50	CYLD	FBgn0032210	FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069	2	5	5	80	2L	10296849	10296945	TTCTAAAGCTAAGCTCGGG		59	10296787	10296808	CACTCGGTAATGTTAACTTCTC		58	NA	
Drosophila melanogaster	50	CG4839	FBgn0032187	FBtr0079944,FBtr0079943	3	2	2	180	2L	10151645	10152707	CGAATAGTCAAGATCAAATGGC		59	10152954	10152972	GTTCGTATGAGATTGCGTG		58	NA	
Drosophila melanogaster	50	CG5899	FBgn0032157	FBtr0100280,FBtr0079901,FBtr0100279	3	3	3	92	2L	9910427	9910501	GTTGTTTGCTAAGAAGGGA		57	9910353	9910371	TTCATGATACGCTTTGCTC		58	NA	
Drosophila melanogaster	50	jp	FBgn0032129	FBtr0113030,FBtr0079861,FBtr0079860	1	3	3	85	2L	9549654	9550211	AGGTTAAGGACTGGTTTGTG		59	9549588	9549608	CATGTAGACAAATAGAAGCGC		59	NA	
Drosophila melanogaster	50	numb	FBgn0002973	FBtr0079821,FBtr0079822	3	2	2	103	2L	9460693	9460711	TGTCGAGGTCTTTGAATCG		59	9460962	9460980	CGCTGACATGAAGTAATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Borr	FBgn0032105	FBtr0079817,FBtr0079818	1	2	2	128	2L	9252041	9252059	TGAAACAGAAGCAAATGCG		59	9251866	9251949	TGTCTGGCATTACTTGAGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG13096	FBgn0032050	FBtr0079698	2	1	1	60	2L	8510910	8510928	TTGAAGTCTGTTGTCTCCG		59	8510868	8510887	AATCAGAGAAGATCGAGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	grk	FBgn0001137	FBtr0079708	2	1	1	82	2L	8431931	8431949	AACACAGTCTTCCATTCCT		58	8431732	8431885	ATGTAGTCACCATTCCAGC		59	NA	
Drosophila melanogaster	50	CG7778	FBgn0032025	FBtr0079606	2	1	1	146	2L	8349599	8349750	GTTCAGGTTTCAGTGAATGG		59	8349859	8349877	GTTACAGGCGTTCATACTG		58	NA	
Drosophila melanogaster	50	CG8475	FBgn0031995	FBtr0079638,FBtr0079639	2	2	2	81	2L	8195970	8196051	CTACAGATAGATTGCGTTTCTC		58	8195910	8195928	CGTGGGTGTAAATGATCTG		58	NA	
Drosophila melanogaster	50	Myo28B1	FBgn0040299	FBtr0079474,FBtr0079476,FBtr0079475,FBtr0079473	3	4	4	101	2L	7682050	7682123	TCTTCAAGATGGAACAGGA		57	7682187	7682206	GTTTCATGCCAATTAGATCG		57	NA	
Drosophila melanogaster	50	CG5973	FBgn0031914	FBtr0079446,FBtr0079448,FBtr0079447	3	3	3	129	2L	7444739	7444758	CTGATCTCCCATATTGAGGC		59	7444849	7444935	TGTCAGCCAGTTCATAATCC		59	NA	
Drosophila melanogaster	50	CG31906	FBgn0051906	FBtr0079412	1	1	1	62	2L	7225670	7225688	CAGATCAACAAGGATGGCA		59	7225626	7225644	GACTTTAAGGGTGACTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wee	FBgn0011737	FBtr0079371	3	1	1	136	2L	6912072	6912192	CAGTCATCCAATTCTGAGTG		58	6911955	6911973	GCTCGAGCAGTTTAATCTG		58	NA	
Drosophila melanogaster	50	CG9498	FBgn0031801	FBtr0079282	3	1	1	115	2L	6350391	6350409	CATTCTTCAGCAACTGGGA		59	6350230	6350248	TCTTCATCAGGATGTCCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7239	FBgn0031740	FBtr0079139	3	1	1	61	2L	5803637	5803656	CTCTACATGGAGGAAGTTCG		59	5803678	5803698	CGACATATCTTGGTTTGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34124	FBgn0083960	FBtr0110838	2	1	1	127	2L	4962424	4962506	GTGTAGACCAGGTGATAGC		59	4962597	4962615	TGAGATCTGTAGCATCGTG		58	NA	
Drosophila melanogaster	50	mRpL24	FBgn0031651	FBtr0079058	3	1	1	92	2L	4944855	4944935	AACCAATTGAGGACTGGAG		59	4944781	4944799	TAACCTGGGTGACAATTCC		59	NA	
Drosophila melanogaster	50	CG2837	FBgn0031646	FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403	2	4	4	164	2L	4904903	4904923	GTTTACTCCAATATACCACCG		58	4904700	4904721	CTTGTTGAACGATTGATCATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15628	FBgn0031632	FBtr0077384	2	1	1	70	2L	4825679	4825697	ACTTTAGAGCGCTATCTGC		59	4826465	4826484	ATACGATCATTCAGGTACGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34351	FBgn0085380	FBtr0112561	2	1	1	100	2L	4717851	4719812	CGGCTATTATGAGAACCGA		58	4719876	4719894	ATTCCTCCTCGTTGAAGTC		58	NA	
Drosophila melanogaster	50	CG9641	FBgn0031483	FBtr0077677,FBtr0077676	2	2	2	60	2L	2975802	2975821	AACTAATTTGTTGTCCGGAG		58	2975761	2975780	GGTACTCTGACTGTGATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18558	FBgn0031469	FBtr0077690	1	1	1	93	2L	2842922	2842940	CTTTCTCATTCCGAATCGC		58	2842785	2842803	ATAGGTGGAACAGCATTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9894	FBgn0031453	FBtr0077714,FBtr0077713	3	2	2	165	2L	2756059	2756077	GATTCCGATGAGGAAGAGG		59	2756279	2756298	ATTATTACGCCTGATCGTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG31689	FBgn0031449	FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706	1	4	4	81	2L	2738712	2738730	GAGACCTTCAACAACTGGT		59	2738773	2738878	AGAAGATGATATGGACTGGTG		58	NA	
Drosophila melanogaster	50	CG3515	FBgn0031431	FBtr0077750	3	1	1	60	2L	2552176	2552195	TGATCAGGTTTACATGTGGG		59	2552135	2552154	CAGATTCTTTATGCGGTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15390	FBgn0031419	FBtr0077764	1	1	1	60	2L	2375247	2375266	AAGTGTTTGATGAACAGTCC		58	2375286	2375307	GTTTCTCCTCAATAGATACCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7263	FBgn0031392	FBtr0077830,FBtr0077831	3	2	2	182	2L	2153363	2153381	GAGCCATCAAGTCTAACGA		59	2153526	2153609	GCTCAAAGAACAAGCTTCTC		59	NA	
Drosophila melanogaster	50	Obp22a	FBgn0043539	FBtr0100503,FBtr0077866	3	2	2	75	2L	1991972	1991990	ATAGGAAGAAGGCACTGGA		59	1991915	1991933	TTGATGAAGCACATGACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14341	FBgn0031315	FBtr0077963	3	1	2	67	2L	1166937	1166956	TTTACAATTGCGAGACATGC		59	1166986	1167004	TAGTGGACATCGCTTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	capt	FBgn0028388	FBtr0100022,FBtr0100023	1	2	2	102	2L	1152249	1152267	GTATCTGTCCAAGGACTCG		59	1152104	1152183	AGCCAACTCGGTATAATCG		59	NA	
Drosophila melanogaster	50	CG4629	FBgn0031299	FBtr0077990,FBtr0077992,FBtr0077991	3	3	3	135	2L	1085632	1085650	CGTTTACCTGGTCACTGAG		59	1085301	1085535	CAGACTGTGCATATGTTTGAC		59	NA	
Drosophila melanogaster	50	dock	FBgn0010583	FBtr0078013,FBtr0078015,FBtr0078014	3	3	3	102	2L	831534	831552	TATTATGGAGCCATCACCC		58	831618	831723	AGTCTCCCATGTTAGTCTC		57	NA	
Drosophila melanogaster	50	CR40469	FBgn0058469	FBtr0113474	1	1	1	88	X	18892	18910	TAATTGTGGCTATTTGCGC		59	18962	18980	GTCTCAACACATTGGAGAC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14583	FBgn0040644	FBtr0077217	1	1	1	190	X	21303017	21303035	ATGGCAGGGAGATTATTGC		59	21302611	21302629	GTAGTGGTACTCACAGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	waw	FBgn0024182	FBtr0100536	2	1	1	74	X	21241691	21241710	ATATTCTGCAAGAGACATCG		57	21241747	21241835	TATCTTTGTAATGGCACGG		57	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG34120	FBgn0083956	FBtr0110827,FBtr0110826	1	2	2	179	X	21003745	21003763	CCTTACGAGGAGTATTCCC		58	21003957	21004215	ACTTCGTATGATGTCGAACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1753	FBgn0031148	FBtr0077245,FBtr0077244	3	2	2	113	X	20919618	20919702	GATGATGGTTCTGTCCTGG		59	20919778	20919797	GATTACTCGTTTGTTGAGCG		59	NA	
Drosophila melanogaster	50	r-cup	FBgn0031142	FBtr0077269	1	1	2	123	X	20895466	20895484	GATCCACCTACTCCTATGC		58	20895092	20895110	AAGTAGCTCCTTTCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14229	FBgn0031059	FBtr0074753	1	1	1	62	X	19588635	19588653	AACAAGATGCTGTACGACC		59	19588591	19588609	GATCACTAGCTACTGGCTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14212	FBgn0031045	FBtr0074742	1	1	1	105	X	19519897	19519915	GAGCAGGACTCCTATTTGG		59	19519984	19520002	CTTGGCTTATGAAGCTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pfrx	FBgn0027621	FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720	2	8	8	60	X	19402025	19402043	CGTTAAACGAGATCGATGC		59	19402067	19402085	TTCTCCTTGATTTGCTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Her	FBgn0030899	FBtr0074590	3	1	1	75	X	18098737	18098755	TCCGGAGTATATCAGAGCC		59	18098680	18098698	GAAATTGGGACACTTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8664	FBgn0030836	FBtr0074445	2	1	1	60	X	17176147	17176168	CGATATTCCCAAGGATATCCAG		59	17176108	17176126	GCTGGTGATGATCATTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8260	FBgn0030684	FBtr0074089	3	1	2	124	X	15651250	15651353	ATATCTATACGACGTTCGAGC		59	15651439	15651457	ATGTCACTAAATTCGGGCA		59	NA	
Drosophila melanogaster	50	CG7872	FBgn0030658	FBtr0074046	3	1	1	65	X	15473154	15473173	ATACTCTCGTTCATCGTGTG		59	15473201	15473219	ATACGGCTGCTTCATTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12608	FBgn0030630	FBtr0074018	1	1	1	252	X	15237888	15237906	GAGAACGCTCATGTTATGC		58	15237501	15237519	CCATGTCGATCTTCCAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	hiw	FBgn0030600	FBtr0073970	3	1	1	92	X	14953765	14953978	CCTGATCGATGAGTTTCCC		59	14953691	14953709	TAGACAAACACTCCATCGC		59	NA	
Drosophila melanogaster	50	CG9512	FBgn0030593	FBtr0073979	1	1	1	248	X	14796976	14798014	AGATCCTGTTGCTTTCAGG		59	14796746	14796764	TAATGAATCCCGTCAAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11585	FBgn0030543	FBtr0114508	2	1	1	60	X	14083685	14083703	TTGCCATTCTGATTCTGAG		57	14083727	14083745	TAGGTGTTACTCAATGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2533	FBgn0030319	FBtr0073537	3	1	1	60	X	11497542	11497560	TCATTCAACTGGAAGAGCA		58	11497500	11497518	TCCTTCTGATCCGTTAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1657	FBgn0030286	FBtr0073448	2	1	1	96	X	11227172	11227266	ATCATCAACTGCATCTCGAG		59	11227325	11227343	CTACGTATATGAGCACGGG		59	NA	
Drosophila melanogaster	50	CG2076	FBgn0030263	FBtr0073428	3	1	1	73	X	10985881	10985962	CAATCAACGCCTCAATGTC		59	10985999	10986017	ACCACTCAGAATGGTAACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12640	FBgn0030202	FBtr0071464	1	1	1	69	X	10326643	10326662	AATCAAGCATCAATGTCCTC		58	10326593	10326611	CAGAAGTCACCTCCAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0230	FBgn0028342	FBtr0071438	1	1	1	187	X	10107392	10107410	GATGAGATGAAGCTGACCT		58	10107635	10107653	AAGAACTTGAGGGTCTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12662	FBgn0030074	FBtr0071264	2	1	1	66	X	8877778	8877796	GAGGGCACTGTTTACTCTC		59	8877730	8877750	CCTCGTAATAGCATAAAGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	e(r)	FBgn0011586	FBtr0071266	2	1	2	167	X	8799405	8799543	AAGGATATCACCATGTCGC		59	8799256	8799274	ATACGTAATGGTCGGAGTG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG1785	FBgn0030061	FBtr0071250	1	1	1	134	X	8609680	8609698	GATTCCTGGACTCAAGGAC		59	8609796	8609876	TCGAATTTCTTGGCTTTGG		58	NA	
Drosophila melanogaster	50	Trxr-1	FBgn0020653	FBtr0071168,FBtr0071167,FBtr0071169	3	3	3	61	X	8140427	8140445	ACATCAAGTCCGTCAACTG		59	8140468	8140558	GATGTACTCCACTTTCTTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG4078	FBgn0029798	FBtr0070807	3	1	1	82	X	5644425	5644506	GAAGCGAATATGAAACTACCG		59	5644550	5644568	GCTAGTGGTTCATCCTCTG		59	NA	
Drosophila melanogaster	50	CG32774	FBgn0052774	FBtr0070662	2	1	1	96	X	4139676	4139791	ACTTTGTTTAACTGTGGGC		58	4139598	4139616	ATTGTTCAAGCTGGTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sgs4	FBgn0003374	FBtr0070524	3	1	1	85	X	3144133	3144151	ATTCCAAAGTCAAGATGCG		58	3144200	3144218	ACAGCATGTAGAACCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14420	FBgn0029643	FBtr0070553	1	1	1	117	X	2833952	2833970	TTCAAGACGATGTTGAGGA		58	2834051	2834069	AAGTAGCTCTCCTCATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Actn	FBgn0000667	FBtr0070343,FBtr0070344,FBtr0070345	2	3	3	106	X	1924397	1924489	ATCTGTCGTTCAAGGATGG		59	1924309	1924329	AAGATTCTCCAGAGGATTGTC		59	NA	
Drosophila melanogaster	50	RpL22	FBgn0015288	FBtr0070148	1	1	1	131	X	658436	658454	AAGGTGGTCAAGAAGAACG		59	657013	658342	GATGTACTTCTCGAAGTCGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG32816	FBgn0052816	FBtr0070101,FBtr0070102	2	2	2	71	X	211945	227599	TGACGAATTTCCGGAAGAG		59	211892	211911	TTTAGTACAGTGATTGGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41521	FBgn0085666	FBtr0114113	1	1	1	204	U	2918846	2919045	GATTAGCCCATAACGTACAC		58	2919211	2919230	GAATTGGACATTATAGCCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1732	FBgn0039915	FBtr0089972,FBtr0089971	2	2	2	88	4	653333	653964	AATTCTGAGGTGTGGATCG		59	654016	654034	TTGTAACTTCCTAACGCCA		58	NA	
Drosophila melanogaster	50	Cec2	FBgn0000281	FBtr0089614	1	1	1	62	3R	26038650	26038668	TTGCTTTCATCATCCTGAC		57	26038694	26038751	TTATATCCGTCAGCCAACC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2126	FBgn0039876	FBtr0085857	3	1	1	87	3R	27601403	27601478	GGTTGATCTATTACTCCTTTCC		57	27601337	27601355	GTTTGATCCAGTTTGAGGG		58	NA	
Drosophila melanogaster	50	CG11337	FBgn0039846	FBtr0085812,FBtr0085811	3	2	3	81	3R	27230181	27230199	AAGGAGAGGAATCCAAAGC		59	27230062	27230136	GAAGGTCATGTTACGTCCA		59	NA	
Drosophila melanogaster	50	Pka-C2	FBgn0000274	FBtr0085727	1	1	1	80	3R	26521700	26521718	TGCCCTCATACTTTACGTC		59	26521576	26521657	AGTTTCCTAAACGCTTTGAG		58	NA	
Drosophila melanogaster	50	CG15536	FBgn0039766	FBtr0085628	2	1	1	60	3R	26250352	26250370	CTCTCAAGAAGCGATCTCC		59	26250310	26250328	CCAGATAGCGTAGCATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7829	FBgn0039703	FBtr0085531,FBtr0085532	2	2	2	60	3R	25643310	25643330	TACATAGTGTCCATCCAACTG		59	25643270	25643290	GGTTATTTATTATGGAGCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12259	FBgn0039557	FBtr0085270	3	1	1	60	3R	23745995	23746013	CCATCTACCAGTTTCTGCA		59	23745953	23745971	TTCAGTTCGATGAACTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acp98AB	FBgn0013745	FBtr0089438	3	1	1	106	3R	23520627	23520645	TAATCCTGTTCTTAGCCGC		59	23520714	23520733	TATCCTTGCTTTAGCTGGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	side	FBgn0016061	FBtr0085168	1	1	1	93	3R	23212947	23214185	AATGATCAGGCGACATCTG		59	23212872	23212890	ATTGATATTCACGTCCCGG		59	NA	
Drosophila melanogaster	50	sda	FBgn0015541	FBtr0112882,FBtr0085066	2	2	2	80	3R	22769909	22769996	GAGATTGTCGAATACTATGGC		58	22770037	22770056	GTCCTTGTTCATGTAGATGG		57	NA	
Drosophila melanogaster	50	CHKov1	FBgn0045761	FBtr0113353	2	1	5	160	3R	21149169	21153867	AAACTACATCCAACGGAGAG		59	21149028	21149047	TAATTAAAGTCCAGGGCACC		59	NA	
Drosophila melanogaster	50	CG11892	FBgn0039313	FBtr0089645	2	1	2	138	3R	21108534	21108619	GAAGAAATTCTACGCTGCC		58	21108721	21108739	ATTCCTATAGCAGGCATCC		58	NA	
Drosophila melanogaster	50	CG5808	FBgn0027617	FBtr0084738	3	1	1	60	3R	20641220	20641238	GGAAAGAAGACGCTCTAGG		59	20641178	20641197	ATCTCTAGATCTAGAACGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tok	FBgn0004885	FBtr0084689,FBtr0084690	2	2	2	87	3R	20568665	20568888	CAGTCACAGAGTCAGAGTG		59	20568939	20568957	CATTCTTGTAGCTGGATGC		58	NA	
Drosophila melanogaster	50	jar	FBgn0011225	FBtr0100171,FBtr0100172,FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173	1	6	6	81	3R	20082819	20082909	ACGGTTATCATGGTTCCTC		59	20082756	20082774	ATAGTCGACTGTAGATGGC		58	NA	
Drosophila melanogaster	50	CG31468	FBgn0047351	FBtr0084473	2	1	1	60	3R	19525720	19525738	GGCGTGTAATAGTCCTAGG		58	19525678	19525697	TTTGCCCACATGATAATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10184	FBgn0039094	FBtr0084481	1	1	1	91	3R	19429481	19429564	TTCTGTACGAACAAGGTGG		59	19429408	19429426	ATCCTGCAGACTAAAGGTG		58	NA	
Drosophila melanogaster	50	fzo	FBgn0011596	FBtr0084399	3	1	1	60	3R	19028881	19028899	AGAAGGTAAAGGATCAGCA		57	19028839	19028858	ACACCTAATTCATCCACGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17109	FBgn0039051	FBtr0084351	2	1	1	282	3R	18922298	18922316	TCAACATCGGTGATGTGAC		59	18922562	18922639	TTAAGGCCAAGTTCATCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG17119	FBgn0039045	FBtr0084357,FBtr0084358	3	2	2	126	3R	18881433	18881519	CAAAGAGATTGTGAAGGATGTG		59	18881328	18881346	GATCTGCGGATAGAAGGAC		59	NA	
Drosophila melanogaster	50	CG31156	FBgn0051156	FBtr0100546,FBtr0084277	1	2	2	124	3R	18436664	18436739	GTACTCAAGCACATTGCTG		59	18436558	18436577	GATTTCTCACCTATGCTTCG		58	NA	
Drosophila melanogaster	50	mats	FBgn0038965	FBtr0084229	3	1	1	139	3R	18247752	18247770	ATGATCTCATGAAGCATGC		57	18247934	18247952	GTACAGCATGTTGATCTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6439	FBgn0038922	FBtr0084190	2	1	1	156	3R	17843782	17843800	GACTTCGAGTGCTACTTCC		59	17843587	17843605	TCATGTTAAGGGTCTGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34148	FBgn0083984	FBtr0111019	1	1	1	80	3R	17704017	17704036	AAGTACCACTGTAGCAAGAG		59	17703788	17703974	GCATTGGTAAGCCTTAAGG		58	NA	
Drosophila melanogaster	50	CG3301	FBgn0038878	FBtr0084100	3	1	2	219	3R	17101299	17101375	CAAACAAAGATCACGAGCA		58	17101018	17101116	CTTTGGTCACTTGGAAGTG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7000	FBgn0038867	FBtr0084027	1	1	1	60	3R	16991958	16992038	GAACTTATGTCTGGAACACCT		59	16991918	16991937	CCATGTCCAGATTAAACTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34139	FBgn0083975	FBtr0110955	2	1	1	107	3R	16038325	16038467	GGAATATTAGGTTTCCTCAACG		58	16038535	16038553	ATTCTGCTGAATCCAATGC		58	NA	
Drosophila melanogaster	50	CG4538	FBgn0038745	FBtr0083855,FBtr0083856	2	2	2	91	3R	15725519	15725605	CTCTATAATGGAACAACTGCTG		58	15725449	15725467	CTTTAACATAGTCGGCGGT		59	NA	
Drosophila melanogaster	50	ire-1	FBgn0038736	FBtr0113248,FBtr0113249	3	2	2	86	3R	15682734	15682752	GTCTCTGATGAGGCTTACC		59	15682609	15682687	CACATAAAGGGATTGGAATAGC		59	NA	
Drosophila melanogaster	50	CG7715	FBgn0038646	FBtr0083685	2	1	1	98	3R	14554043	14554134	GAAAGTATTCGCATTGTGC		57	14553963	14553981	CAGCGGATACTGATCTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12321	FBgn0038577	FBtr0083616	2	1	1	60	3R	14014299	14014317	TAAAGGACAAGCGTACCAC		59	14014257	14014278	CAAATGCTCGGTATGATTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083348	3	1	6	94	3R	12484785	12558454	TATCGCAGGTACAAATGGT		58	12484709	12484727	AATGATTCGTGTGGAACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8925	FBgn0038404	FBtr0083253,FBtr0113241	2	2	2	114	3R	12005514	12005532	CCGACGTAGTCTTATTGGT		58	12005609	12005688	AATGAGACACTTGGCTATGG		59	NA	
Drosophila melanogaster	50	Trax	FBgn0038327	FBtr0083093	2	1	2	60	3R	11188257	11188327	CGGTTACATCAGTCTAAACTG		58	11188349	11188367	CATGGTAGTGATCTTACGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(var)3-9	FBgn0003600	FBtr0083131,FBtr0083130	3	2	3	192	3R	11085402	11088280	CAATCAAGCTGGGTTATGC		59	11085228	11085246	ATAAGAATGTCGTGACCGG		59	NA	
Drosophila melanogaster	50	CG12207	FBgn0038220	FBtr0082922,FBtr0082921,FBtr0082923	3	3	3	154	3R	10126681	10126702	CCTTAACAAGATAGACAACACC		58	10127025	10127044	TCTTGTAGGAGTTGTTCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33109	FBgn0053109	FBtr0082900	3	1	1	60	3R	10046970	10046991	CTCTAACTGGTCTAGGTTTGAG		59	10046931	10046949	GCCTTGATGTTCGTTAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3061	FBgn0038195	FBtr0082869	1	1	1	81	3R	9859758	9859776	TTGGACTCTCCATGATGTC		58	9859818	9859901	CGCTTCACCGAATATTTATGAG		59	NA	
Drosophila melanogaster	50	CG6234	FBgn0038071	FBtr0082648	1	1	1	80	3R	8476860	8476937	ATGAAATTAAGCTTGCGGTC		59	8476977	8476998	CTTCATCGATTGTCTTTGACTC		59	NA	
Drosophila melanogaster	50	CG5196	FBgn0038039	FBtr0082585,FBtr0082584	3	2	2	198	3R	8236686	8236758	ATCAGTATACATTGACGCG		57	8236919	8236938	CGAGTGACCTTAATCATGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6834	FBgn0037935	FBtr0082438	2	1	1	83	3R	7511672	7511742	ACTGAAAGATCACACTTCCA		58	7511608	7511627	TTAACGTCCGTAAAGTTGTC		58	NA	
Drosophila melanogaster	50	CG14708	FBgn0037910	FBtr0082409	3	1	1	62	3R	7380010	7380030	TCGAGTCTCTACAATATCGAC		58	7380054	7380072	CCTATCCAGATTCACGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6293	FBgn0037807	FBtr0082240	3	1	1	70	3R	6134934	6134952	TGGAACCAATACCTTTGGA		58	6134818	6134836	GTATTACACGTCGGGATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33783	FBgn0053783	FBtr0091784	1	1	1	136	3R	5892589	5892608	GTACGTGCTATGAGAAGTCC		59	5892707	5892903	TAGCGATAGAATGCACGTC		59	NA	
Drosophila melanogaster	50	PpD3	FBgn0005777	FBtr0082129,FBtr0082128	2	2	2	85	3R	5574499	5574517	TTAAGGGTTACTATCGCCG		58	5574564	5574640	CTTGGCTACGAATTCAAAGTC		59	NA	
Drosophila melanogaster	50	CG8319	FBgn0037722	FBtr0082077	3	1	1	77	3R	5453630	5453709	AAGGTTCACAGCAATTCAC		58	5453750	5453768	TTGGTGGTTATCCAGATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8135	FBgn0037689	FBtr0082030	1	1	1	97	3R	5232748	5232767	GGTCTCATCCATATGGACAC		59	5232885	5232905	GAGATGATGCCAATAACATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG16736	FBgn0037668	FBtr0081985	2	1	1	76	3R	5082868	5083009	ACTATCGAAATTTCTGGAGAGG		59	5082813	5082832	TTTCCAACCGGTAAATAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst84Da	FBgn0004172	FBtr0081584	1	1	1	107	3R	3191578	3191598	CCACCTTCAATAGTTAACACC		58	3191667	3191685	AAACGTAATTCGGGTTGAC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG10286	FBgn0037439	FBtr0081717	3	1	1	60	3R	2195611	2195631	CATGGAGACAGAGGATATGAC		59	2195653	2195671	GCATTGGTTAGGTTTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pak	FBgn0014001	FBtr0081714,FBtr0114607,FBtr0081715,FBtr0081716	3	4	4	85	3R	2184959	2184977	CATTTCAGGACTTCCTCGA		58	2185026	2185115	TAGGAAGGGATGCTTTAGC		58	NA	
Drosophila melanogaster	50	Osi4	FBgn0037412	FBtr0078615	2	1	1	72	3R	2045634	2045943	AAGATGATGTACCAGTTCCC		59	2045581	2045599	CTCCATGAAGCGGATAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12147	FBgn0037325	FBtr0078793	2	1	1	60	3R	1252662	1252681	TATTGGAAACGGATCCTTCG		59	1252621	1252639	CTTCTCGTGGTACTTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31534	FBgn0051534	FBtr0078865,FBtr0078866	3	2	2	84	3R	534702	534721	GTCCATCGAGGATAAGATCC		59	534768	534896	TTTCAGTTCCTCTTGCGAG		59	NA	
Drosophila melanogaster	50	CG31525	FBgn0051525	FBtr0078924	1	1	1	60	3R	253547	253567	TTCTGAGCTAGCTAGAAATCC		59	253589	253607	AAAGAAGCCTGTTATGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	siz	FBgn0026179	FBtr0111038,FBtr0078289,FBtr0078290	3	3	3	119	3L	21066241	21066320	TCATCCGATACGATCTTCG		58	21066401	21066421	GCGCAGATTCTTGATAAAGTC		59	NA	
Drosophila melanogaster	50	CG7323	FBgn0036943	FBtr0074863	1	1	1	82	3L	20149055	20149073	TGTCATTCTGCTTGGACTC		59	20148918	20149011	GAGTGCATTAAGTAGTGTCAC		58	NA	
Drosophila melanogaster	50	obst-J	FBgn0036940	FBtr0074866	3	1	1	60	3L	20123880	20123900	AGGAGAATATTCAGGTAGAGC		58	20123840	20123859	TTATGTTTCGCTGGAATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kto	FBgn0001324	FBtr0074884	2	1	1	170	3L	19835690	19835781	CCGAGAAGATTTGCATAAAGG		59	19835913	19835931	GTTGCTGAGTATTGACCAC		58	NA	
Drosophila melanogaster	50	Shal	FBgn0005564	FBtr0074973	2	1	2	90	3L	19565450	19565468	CTGGATGACAACTATCGGG		59	19565167	19565397	AATGTTGCTACATCGTTGTC		58	NA	InUTR
Drosophila melanogaster	50	CG32214	FBgn0052214	FBtr0074929	1	1	1	60	3L	19460454	19460472	AGAGTTTCTAGCCTTCCGA		59	19460496	19460573	AGCGTATTTGAACATGGTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075006,FBtr0075013	3	2	11	122	3L	19302782	19302856	AAAGTGGCCTACTACTTGG		58	19302678	19302696	AAACTCGATCTCGTTGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6497	FBgn0036704	FBtr0075250	2	1	1	60	3L	17246813	17246831	AGTAACAGCCTACTTGCAC		59	17246771	17246789	CTTCCAGTACATGAGGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	retinin	FBgn0040074	FBtr0075375	3	1	1	216	3L	16325082	16325159	GTCTAGATTGTTCCTGCCC		59	16325339	16325357	CTCCTGGGATTGATCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5284	FBgn0036566	FBtr0075444,FBtr0075445	2	2	2	82	3L	16087580	16087598	TTATCCGTTCCTAGACAGC		58	16087644	16087720	AAGTTTCATTCCGCTTTGG		58	NA	
Drosophila melanogaster	50	Eig71Ef	FBgn0004593	FBtr0075584	3	1	1	206	3L	15650397	15650418	GGCTGTGTACTTATTAATGGAC		58	15649896	15650230	TTTCCTCTTGTGAGCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	FucTA	FBgn0036485	FBtr0075641	1	1	1	84	3L	15145211	15145229	TACTATCTGGAGTGTCCGT		58	15145276	15145480	TACTATCCCGTCTGTAGGTG		59	NA	
Drosophila melanogaster	50	CG9311	FBgn0036448	FBtr0075700	1	1	1	82	3L	14764772	14764857	GGATTCGATTCACCTATCGT		59	14764709	14764727	GACTCATTGCCCTCTATCG		59	NA	
Drosophila melanogaster	50	CG7257	FBgn0036224	FBtr0076040	1	1	1	111	3L	11935816	11935906	TTGAAGGTCGTTTCCTCTG		59	11935978	11935999	CCATGAATATGATACATGGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rt	FBgn0003292	FBtr0076146	3	1	1	116	3L	11578107	11578184	CGCTATACACAGACTGAGG		59	11578009	11578027	GGATTGTAGCTCCAGTAGC		59	NA	
Drosophila melanogaster	50	Cdk8	FBgn0015618	FBtr0076369	2	1	1	93	3L	9831632	9831650	TATTCAACTACGAGGGCTG		58	9831495	9831575	GCATATTCTTTGCCATCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ImpL3	FBgn0001258	FBtr0077008	1	1	1	185	3L	6253759	6253778	TCCAACTTTCTGAAGAACCC		59	6253525	6253611	ATCGGGACTGTACTCTACC		59	NA	
Drosophila melanogaster	50	CG5592	FBgn0035645	FBtr0077029	2	1	1	105	3L	5891556	5891577	CTATGTCATCAGTAATTGGAGG		58	5891643	5891718	CATAAGCCAACTTGGTGAC		58	NA	
Drosophila melanogaster	50	CG15011	FBgn0035518	FBtr0073244	3	1	1	112	3L	4256644	4256662	GGTTTACAAGTGCAACGAG		59	4256490	4256570	CGCAAGGATAATTCTTCAAGC		59	NA	
Drosophila melanogaster	50	Cpr64Ac	FBgn0035512	FBtr0073252	1	1	1	142	3L	4212503	4212521	AGTAACCGATCATCACACC		59	4212379	4212397	TGAATCCGTTGACCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr64c	FBgn0045477	FBtr0073196	3	1	1	82	3L	4031425	4031502	TCATAGCTTTCAATCCAAGG		57	4031547	4031565	TTAGTACGCGAATGATGAC		57	NA	
Drosophila melanogaster	50	CG17723	FBgn0035432	FBtr0073057,FBtr0073055,FBtr0073058,FBtr0073054,FBtr0073056	1	5	5	85	3L	3312395	3312526	CATATTAGGTGCCGTAACCT		59	3312574	3312592	GTAGAGTGGATACCCTCGT		59	NA	
Drosophila melanogaster	50	CG12734	FBgn0035411	FBtr0073036,FBtr0073035	2	2	2	141	3L	3183013	3183031	TACAAGATGGTACGCATGG		59	3183135	3183209	GTATCAACATCTCACAACGC		59	NA	
Drosophila melanogaster	50	CG32846	FBgn0052846	FBtr0073009	2	1	1	128	3L	2951188	2951269	ATGATCCCAATGCTTCTGG		59	2951078	2951098	ATTGGTAGTAGTCCGAAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9970	FBgn0035380	FBtr0073010	1	1	1	60	3L	2916269	2916287	ACAGTAACTACAAGGTCCC		58	2916227	2916246	ATGAAGGGTTTACTCTTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2083	FBgn0035376	FBtr0073014	3	1	1	154	3L	2792351	2792370	GTTGAGAATCGAGAAGATCG		58	2792153	2792235	TATATGCAGCTATGCATCTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG32308	FBgn0052308	FBtr0072851	2	1	2	81	3L	2023320	2025974	CAAATTTCTTCAGACTGGAAGG		59	2023260	2023278	TACAAATTGCCTCAGTTGC		58	NA	
Drosophila melanogaster	50	CG11814	FBgn0035296	FBtr0072855	3	1	1	80	3L	1951225	1951298	ATGGGATCTCAATGACTGG		58	1951163	1951181	GCCACATGTGTTATTGGAG		58	NA	
Drosophila melanogaster	50	CG5687	FBgn0035293	FBtr0072858	2	1	1	113	3L	1935544	1935626	CTCTATGTCATTCAGATGTGC		58	1935451	1935469	CACATAGATCAGGACCACG		59	NA	
Drosophila melanogaster	50	alphaCop	FBgn0025725	FBtr0072811	3	1	2	108	3L	1644086	1644104	AGTGCCTCTTTACATTCCG		59	1643940	1644015	TTAAAGACCACCATACCTCC		58	NA	
Drosophila melanogaster	50	CG12099	FBgn0035232	FBtr0072829,FBtr0072828	2	2	2	94	3L	1556339	1556357	CTTGCCTTTGACTTGTCAG		58	1556209	1556283	GAATGTCCTCCTTAAAGAGCT		59	NA	
Drosophila melanogaster	50	CG13582	FBgn0035015	FBtr0072301	3	1	1	162	2R	20406543	20406562	CTATTCCGATCTGAAGTGGG		59	20407026	20407044	GTAATGTAGCTCCTTCCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13582	FBgn0035015	FBtr0072301	1	1	1	161	2R	20406544	20406562	TATTCCGATCTGAAGTGGG		58	20407026	20407044	GTAATGTAGCTCCTTCCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG16786	FBgn0034974	FBtr0072248,FBtr0072247	3	2	2	93	2R	19971025	19971043	AACTGTCTATGGCTTCCTG		58	19971098	19971185	GGATTTAAGTTCAAAGGCTGG		59	NA	
Drosophila melanogaster	50	CG30179	FBgn0050179	FBtr0072182	3	1	1	88	2R	19964712	19964730	AGATGTACCACAGGAAGTG		58	19964782	19964800	GATATTGTCATCCGGTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Upf3	FBgn0034923	FBtr0072222,FBtr0072221	1	2	2	90	2R	19782127	19782202	TTAAGATTGTGATGCGGCA		59	19782055	19782073	TAATACGAGTCGTTCTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bgcn	FBgn0004581	FBtr0072232	2	1	1	103	2R	19741207	19741281	TGAAATCTTAGATGCGTGTG		58	19741123	19741141	CCATAATCAAGTTGCCGAC		58	NA	
Drosophila melanogaster	50	CG34371	FBgn0085400	FBtr0112596	2	1	1	82	2R	19058172	19060020	ATCTCCTCACGATGTACAC		58	19058108	19058127	ATTCATGTCGAGGATAACCT		58	NA	
Drosophila melanogaster	50	jbug	FBgn0028371	FBtr0071918,FBtr0071919,FBtr0071917	3	3	3	165	2R	18612084	18612102	TGGAGATAACGATTTCGGC		59	18611564	18611582	ATGCTAACCGTAATCGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11269	FBgn0034700	FBtr0071765	2	1	1	159	2R	18026528	18026546	TTCTTCTACGTCCAGTCAC		58	18026669	18026687	CAATGAAGACGAATCCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2921	FBgn0034689	FBtr0071800	2	1	1	163	2R	17962201	17962274	ACTTTACTGGCGAAGAACC		59	17962056	17962077	GTATGACTTCAGAAATACGCTG		59	NA	
Drosophila melanogaster	50	CG9304	FBgn0034674	FBtr0071726	2	1	1	108	2R	17862234	17862255	GTTCCTTTACATCTGGGATAGG		59	17862377	17862459	CATCATAAAGGAGGTGCGT		59	NA	
Drosophila melanogaster	50	CG30152	FBgn0034543	FBtr0086236	1	1	1	80	2R	16559350	16559628	CCAATGTCTCAGTTGTTCG		58	16559670	16559690	GTATACAGAGTCCAATAAGCG		58	NA	
Drosophila melanogaster	50	CG16799	FBgn0034538	FBtr0086249	3	1	1	188	2R	16541253	16541271	GACAAGACCTTCATTTCCA		57	16540897	16541050	GTCATTGGAGAAGTCTTCAC		58	NA	
Drosophila melanogaster	50	bl	FBgn0015907	FBtr0086219,FBtr0086221,FBtr0086220	1	3	4	139	2R	16483156	16483268	GATTCCGAGCAGTATTGCT		59	16485963	16485983	CTATATCCGCCGATATTTGGA		59	NA	
Drosophila melanogaster	50	Elongin-C	FBgn0023211	FBtr0086541,FBtr0086540	3	2	2	66	2R	15332849	15332868	AAGGTCTGCATGTACTTCAC		59	15332802	15332820	GGAATTCGGGTATTTCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10764	FBgn0034221	FBtr0086919	1	1	1	81	2R	13341608	13341626	ATGACTTCATTGCATCGGA		59	13341670	13341741	TGAACTCGAACTGTGTAGAC		59	NA	
Drosophila melanogaster	50	CG7997	FBgn0034117	FBtr0087172,FBtr0087171	2	2	2	98	2R	12229052	12229070	AATGTGCAGGATCTGTACG		59	12228913	12228991	GTAGAAAGTTACGCCATTGG		58	NA	
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	2	5	7	81	2R	11836642	11836721	TTTGCTACGTGCTACTCTC		59	11836579	11836599	TCCGCTCTAGTTATATTCGAG		58	NA	
Drosophila melanogaster	50	GalNAc-T1	FBgn0034025	FBtr0087332,FBtr0087331	2	2	2	61	2R	11401756	11401906	GACTTCCATCCTTACAAATTCC		59	11401927	11401946	ATGCGGGCAGTATTAATACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12853	FBgn0040747	FBtr0087406	1	1	1	73	2R	10821197	10821215	AAGGGTGCTAAGAAAGGAG		58	10821252	10821270	TTCGATTCGGAAGTCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HPS	FBgn0033973	FBtr0087449	1	1	1	60	2R	10744440	10744459	ATTACCTTAAGAAGGGCCAG		59	10744482	10744500	TACGAGTAATGGAATGCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10151	FBgn0033960	FBtr0087471,FBtr0087472,FBtr0087473	2	3	3	70	2R	10641377	10641492	GCAATGAGAATCCTTCTTCG		58	10641326	10641345	AAACGATTGTGTTGGATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AGO1	FBgn0026611	FBtr0087613,FBtr0087612,FBtr0087614	3	3	3	103	2R	9835755	9835773	TATCAGCTATGCCATACGT		57	9835604	9835688	ACCAGATGATATCTGGCAC		58	NA	
Drosophila melanogaster	50	CG34235	FBgn0085264	FBtr0112429	2	1	1	94	2R	9099234	9099316	ATAATCTCCGCTCTTTCGG		59	9099158	9099176	CAAATCAGGATGAGAAGCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	Mdr49	FBgn0004512	FBtr0087801	2	1	1	80	2R	8832633	8832653	GACTTTCAGCTTAAGGAAGGA		59	8832508	8832593	TCTGGTTGAGTATCTGAACAG		59	NA	
Drosophila melanogaster	50	CG8594	FBgn0033755	FBtr0087826	1	1	1	91	2R	8460035	8460053	TAGGAACATCAACAGCAGC		59	8460108	8460210	CTTCGTAGTCCAAGCTCTC		59	NA	
Drosophila melanogaster	50	SmD3	FBgn0023167	FBtr0087986	3	1	1	61	2R	8056579	8056600	CAAGATCCGATTCCTTATACTG		58	8056622	8056640	TCTGCTTCTTGAACATCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vhl	FBgn0041174	FBtr0088115	3	1	1	64	2R	7167595	7167613	GTTCCGGGATTACTACACG		59	7167641	7167659	GAATCGGCTGAAAGATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cag	FBgn0017414	FBtr0088239	2	1	1	75	2R	6781292	6781368	CCAAGAGGTTTAACATTGGA		57	6781236	6781255	AACAGACCCTCTTTAATCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18004	FBgn0033566	FBtr0089729,FBtr0089728	2	2	3	81	2R	6773588	6773606	TATTGAGTCCGGAATGCAC		59	6773648	6773727	TCATTGGGATAACACTTAGAGG		59	NA	
Drosophila melanogaster	50	Prosbeta5	FBgn0029134	FBtr0088224	3	1	2	159	2R	6707587	6707607	GCTGAAATCTGCAAGATATCG		59	6707789	6707808	TCTGATTAAGGTTGTGCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Jra	FBgn0001291	FBtr0088411,FBtr0088410	1	2	2	61	2R	5984793	5984813	GCTGCGAACTTAAGTATTCAG		59	5984836	5984854	GGTATGATCTGAATGGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lin	FBgn0002552	FBtr0088651	2	1	1	60	2R	4803385	4803403	TGACCACAAGCTTATCGAC		59	4803427	4803445	TTGCACGTAAGAGTTCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8693	FBgn0033294	FBtr0088748	3	1	1	94	2R	4347435	4347454	TTCCGATGCCTATCATTACG		59	4347511	4347615	TGTCATGGTTACCGATCAC		59	NA	
Drosophila melanogaster	50	CG1707	FBgn0033162	FBtr0089013	2	1	1	263	2R	3283217	3283303	CAAGGACTTCCTCTTCCAG		59	3281431	3281450	TAATTCTGATCCGGATCCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12835	FBgn0033142	FBtr0089040	2	1	1	71	2R	2995253	2995271	AAATCCCAAGGATACGGAG		58	2995306	2995324	TGGTTGAAGTAGCAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6a2	FBgn0000473	FBtr0086133	3	1	1	62	2R	2667872	2667890	CAGCTAACGTACGAATCCA		59	2667759	2667846	CAGGGTTTCTGAGATGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dream	FBgn0033051	FBtr0086028	2	1	1	61	2R	1908911	1908988	AAATGCAATCCAAAGACCG		59	1908868	1908889	AACGTACTTAGAGGTAAGAGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG40290	FBgn0058290	FBtr0111294	1	1	1	75	2R	493558	493576	GAAGAAGTTGAGCAACCAC		58	493615	493633	CACTTGGTCCTACTTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	p120ctn	FBgn0015587	FBtr0111113,FBtr0111114	2	2	2	61	2R	494766	494785	CCAATTACGACAAACATCCC		59	494809	495865	TCCTTTAGATGACGATGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CR9337	FBgn0032898	FBtr0081448	2	1	1	127	2L	20863226	20863244	ATCAACCCGATTAAGCGAG		59	20862939	20863011	GGTTTGCTGTACTCATAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10481	FBgn0032827	FBtr0081311,FBtr0081312	3	2	2	135	2L	19891949	19892067	GCGAGTTCTATCTTAGCCTG		59	19891833	19891853	AGAACGTATTTCTCGTACCAG		59	NA	
Drosophila melanogaster	50	CG17322	FBgn0027070	FBtr0081107,FBtr0081105,FBtr0081108,FBtr0081106	2	4	4	127	2L	18827246	18827517	CTATTAGCTTAGAGGACTTCGA		58	18827605	18827623	GATCTCAGTTAGGGCTCTG		58	NA	
Drosophila melanogaster	50	CG31805	FBgn0051805	FBtr0080958	1	1	1	82	2L	16898807	16898825	AAACAGGCGAGTATCAAGG		59	16898676	16898762	AAACTTTCGCTATCGAAGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG33552	FBgn0053552	FBtr0091522	1	1	1	60	2L	16682858	16682876	AAAGAAGATCGCCGAAGAG		59	16682899	16682918	TCCGGTAACCTCATAATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31818	FBgn0051818	FBtr0080841	2	1	1	68	2L	16338726	16338745	GGAAATTCGGGAAGTAACTG		58	16338615	16338695	CAAATTGGCACCTGTATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31817	FBgn0028899	FBtr0080842	3	1	1	74	2L	16336230	16336308	GAGATCCCATAGACAAGCA		58	16336174	16336192	ATTTCAAAGGAACCACGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)35Bg	FBgn0001977	FBtr0080725	1	1	1	200	2L	15038226	15038244	AACTGATCGATGAGGAGGA		59	15037976	15038064	CGAGATAACAATTTCCACAGC		59	NA	
Drosophila melanogaster	50	pburs	FBgn0032546	FBtr0080634	3	1	1	126	2L	14416992	14417068	TGAAAGAGTGCTACTGCTG		59	14416884	14416903	CGAAGACGTATATCCATGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6565	FBgn0032513	FBtr0080468	2	1	1	71	2L	13375132	13375212	CCTCCTTATACTCATACAAGGT		58	13375244	13375262	TTTGAACGTGGAGGAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ACXA	FBgn0040510	FBtr0080415	2	1	1	80	2L	12924117	12924193	ATGAACTACAAGCTCAACCT		58	12924234	12924254	AAGCAGGATTATGATGGACTG		59	NA	
Drosophila melanogaster	50	SC35	FBgn0040286	FBtr0089899,FBtr0089898	2	2	2	176	2L	12432195	12432317	GAGTGCGAGATATGACTCG		59	12432037	12432058	CTCTACTTATTTACTCTGCCGA		59	NA	InUTR
Drosophila melanogaster	50	Or33a	FBgn0026392	FBtr0080278	1	1	1	62	2L	11935226	11935320	AGATAATACGCCTACTTCGC		59	11935345	11935363	CACTAGAAAGGAACTGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16854	FBgn0032338	FBtr0080194	2	1	1	60	2L	11089193	11089213	GACAATACGTTTCCCAATCTC		59	11089233	11089253	GATTCAGTTCCTGATCATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12253	FBgn0026148	FBtr0080149	1	1	1	92	2L	10988974	10989059	CAAGCATTGATACGGAACAG		59	10989114	10989132	GATTGTTGTCATCTCCGGA		59	NA	
Drosophila melanogaster	50	dpr2	FBgn0053507	FBtr0091447	3	1	1	133	2L	10918849	10918867	GCCAATTTACTGGTATCGC		58	10918201	10918752	CAATGCGTAATCTGCTCTG		58	NA	
Drosophila melanogaster	50	CG5958	FBgn0031913	FBtr0079466	2	1	1	182	2L	7431234	7431252	TCGATGAAACAGGTGAAGG		59	7430847	7431090	GAAGTGCATCCTATTGTTCAG		59	NA	
Drosophila melanogaster	50	sip2	FBgn0031878	FBtr0079360,FBtr0079357,FBtr0079361,FBtr0079359,FBtr0079358	1	5	5	63	2L	6961828	6961910	TTCCGAAATCAAGCATGTG		58	6961783	6961801	AATTTGAGGTACCTTCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31646	FBgn0051646	FBtr0079114	1	1	1	96	2L	5641945	5645466	TCCCGAGAAAGATCTTCCA		59	5641867	5641885	CAAATTGTCGACTACGCAC		59	NA	
Drosophila melanogaster	50	Sr-CI	FBgn0014033	FBtr0077467	2	1	1	111	2L	4122569	4122712	TAGGTTCAGAGCCAATTGC		59	4122785	4122805	GAATATCACCTGGAAGTCCTC		59	NA	
Drosophila melanogaster	50	CG3980	FBgn0031575	FBtr0077504,FBtr0077503	3	2	2	102	2L	3869048	3869122	ATCAACAGTTTGGATGGCT		59	3869185	3869206	TAAGACTCTCAATAGGATCGAC		58	NA	
Drosophila melanogaster	50	toc	FBgn0015600	FBtr0112883,FBtr0110903,FBtr0077665,FBtr0077663,FBtr0077662,FBtr0077664	2	6	6	92	2L	3070721	3070831	AAAGGAGAAGGAAATCCAGC		59	3070648	3070666	TCTTTGTCATACGTCAGCC		59	NA	
Drosophila melanogaster	50	Taf10b	FBgn0026324	FBtr0077735	3	1	1	73	2L	2767394	2767412	CTTGACCATGGAGGATCTG		59	2767339	2767359	ACTGACTATAGTCCACTTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31948	FBgn0051948	FBtr0077788	3	1	2	105	2L	2416372	2416446	TCTTGTGCAAGTCGTATCC		59	2416285	2416303	GAACTTCATTGGGCAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13950	FBgn0031289	FBtr0078018	3	1	1	241	2L	861248	861266	GAGTTCTCCATCTGCTTCC		59	861540	861560	TTGTAGTAGGTGAAGTACTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	tRNA:S2b:86A	FBgn0011970	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG17162	FBgn0039944	FBtr0113724,FBtr0113726,FBtr0113723,FBtr0113725,FBtr0113722	2	5	5	60	XHet	66271	66289	GTGGATGTAGAGGACAGGA		59	66229	66247	GCCGATGAAATATTCCCTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14619	FBgn0031187	FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350	2	5	5	123	X	21868683	21868703	TTTATGAACTCGGTCATCCAG		59	21868788	21868866	GTTTGGCAAATTCGTGGAG		59	NA	
Drosophila melanogaster	50	Rrp45	FBgn0030789	FBtr0074355	3	1	1	275	X	16684003	16684021	ATAACGAGAGCAGTGAGAC		58	16683691	16683709	TACACGACTATCACAACGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	1	7	7	80	X	15717652	15717670	TATCACCGGCATCTATTCG		59	15717712	15717802	TTGCCGTATATCAACAGTCTC		59	NA	
Drosophila melanogaster	50	CG8974	FBgn0030693	FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186	1	5	5	210	X	15688455	15688537	GATCCACGTAACAAAGTTCC		58	15688199	15688217	GTTCATCCTCGTATTGCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Yp2	FBgn0005391	FBtr0071424	1	1	1	69	X	9946192	9946210	CAACCTGAACACTTTGGTG		59	9946141	9946159	GAAGATGGTGACCTCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0232	FBgn0028341	FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407	3	6	6	85	X	9524046	9524066	GCCGTCGGATTATATTAATGC		59	9523916	9524001	TCTTTGGTAATGGACCTTGAG		59	NA	
Drosophila melanogaster	50	inx7	FBgn0027106	FBtr0071035,FBtr0071034	1	2	2	90	X	6886130	6886219	TGCTTCTACAGAAATGTCAC		57	6886059	6886078	CAATTACCGCCAATAATTCG		57	NA	
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	2	8	8	173	X	6579447	6579465	ACAACGTCTTCCACTACAG		59	6579602	6579683	AATTCGCTGGAGAAGTCAC		59	NA	
Drosophila melanogaster	50	CG33080	FBgn0053080	FBtr0070845,FBtr0070844	3	2	2	141	X	5604995	5605517	TATTTCTGATCGGCTATGCC		59	5604873	5604892	AATTGACCCGATATCACCTC		59	NA	
Drosophila melanogaster	50	CG40096	FBgn0058096	FBtr0113791	1	1	1	142	U	181438	181456	CTCGAGTCAAGTTCCAGAG		59	181624	181642	CAAACCTCGTGTAAGGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	sima	FBgn0015542	FBtr0114597	2	1	2	95	3R	25907960	25907978	CTACTGCTGGATTCTTAGC		57	25908036	25945862	GGAATCGTCATCCTTATGAC		57	NA	
Drosophila melanogaster	50	CG7816	FBgn0039714	FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921	3	6	6	81	3R	25690544	25690624	GGGCGATAATCAAGATCCT		58	25690481	25690500	GATCGTGAAGATCAGTATGC		58	NA	
Drosophila melanogaster	50	CG14523	FBgn0039612	FBtr0085349	1	1	1	60	3R	24704571	24704590	CGAGGGAACAACTACTAGAG		58	24704530	24704549	TCGGCATATCCATTGATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14065	FBgn0039579	FBtr0085280	3	1	1	151	3R	24160033	24160051	CTGAAGAGCTTCAAGTCGT		59	24159900	24159918	AATTCCGATGAGTTCTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17781	FBgn0039196	FBtr0113279,FBtr0084623	1	2	2	240	3R	20199970	20199988	AAATGCAAATGGACAGCAG		59	20199683	20199701	TATGTGATGTTTGGGTGGT		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Gr94a	FBgn0041225	FBtr0084346	1	1	1	60	3R	18878200	18878218	ATTCTGTCGCTCATATGCC		59	18878238	18878260	CATAGTACAGACTGTAGAAACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7907	FBgn0038887	FBtr0113262,FBtr0113261	1	2	2	81	3R	17231539	17231557	TGTCTTCATCTGGGATCCA		59	17231600	17231709	CAACCAAATCCTTGAAGACAG		59	NA	
Drosophila melanogaster	50	tin	FBgn0004110	FBtr0084086	1	1	1	288	3R	17206636	17206654	ATCTACGGTTCAGATGAGG		58	17207331	17207352	GATTCTGGAACCAAATCTTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3734	FBgn0038700	FBtr0083755	1	1	1	80	3R	15215340	15215421	GCCACTATTATTCCAGAGCA		59	15215464	15215482	GGAAGCTCTCATTTCAGCA		59	NA	
Drosophila melanogaster	50	Rpb4	FBgn0053520	FBtr0100273,FBtr0100275	2	2	5	95	3R	14079507	14079585	TGAGATTGGAGATCTGCCT		59	14079430	14079448	TAGTCCAAATACGACTGCG		59	NA	
Drosophila melanogaster	50	CG14315	FBgn0038568	FBtr0083547	1	1	1	60	3R	13984917	13984938	GGTGTCCAGTGTTATCTATCTG		59	13984959	13984977	ATTCGACAGAAGGACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	2	15	15	121	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811941	7812031	TTCTTCAGGATGTTGGAGG		58	NA	
Drosophila melanogaster	50	CG17187	FBgn0037882	FBtr0082365	1	1	1	77	3R	7057294	7057312	ACAAGAATCCGGACAATCC		59	7057235	7057253	ATTCATCCGTGAGGATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Invadolysin	FBgn0086359	FBtr0082181	1	1	1	80	3R	5983497	5983578	AGAGAATAATCCCAGGCCT		59	5983622	5983640	GATTCGCTGTGATCAAAGC		59	NA	
Drosophila melanogaster	50	Dh	FBgn0012344	FBtr0112870	2	1	2	237	3R	5466244	5469213	CCGTAATCGCTATACTCCA		58	5469414	5472752	CAGAAAGTCATCCTGTGAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG2781	FBgn0037534	FBtr0081823	2	1	1	81	3R	3809807	3810523	ACATCGTAAAGGTACTCGG		58	3809744	3809763	GCATTGTAGACGATCAAGAC		58	NA	
Drosophila melanogaster	50	Sp7	FBgn0037515	FBtr0081740,FBtr0081742,FBtr0081743	1	3	4	89	3R	3586916	3586934	CAACACGCAAAGTAGTTGG		59	3586987	3587737	TCCTACAACTTCCTTGTGC		59	NA	
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0100238,FBtr0100237,FBtr0078257	2	3	10	189	3L	20809758	20809776	ACATGTCCTACATGATGGC		59	20809928	20825959	AGTTTGACTTGTTCCCTCTC		59	NA	InUTR
Drosophila melanogaster	50	Shal	FBgn0005564	FBtr0074973	3	1	2	81	3L	19565173	19565402	GAGAAGACAACGATGTAGC		57	19565110	19565128	CTTTCCTAATGAGCTCGTG		57	NA	InUTR
Drosophila melanogaster	50	CG32174	FBgn0052174	FBtr0075227	1	1	1	82	3L	17422690	17422963	AAAGATAATCAAGTCACGCC		58	17422627	17422645	TATCGCGTCATCAAGTAGG		58	NA	
Drosophila melanogaster	50	CG8745	FBgn0036381	FBtr0075801	3	1	1	103	3L	13855093	13855111	CTTCTTCGTCAATTCCGGA		59	13854888	13855026	CATGATAGGCATGGTCGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	MTF-1	FBgn0040305	FBtr0113323,FBtr0113322,FBtr0076459	1	3	5	105	3L	9427561	9427579	AATTGGAAATCTGCGAACG		59	9429006	9429024	CTTCAGGCTGTAGGAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gug	FBgn0010825	FBtr0076616,FBtr0076619,FBtr0076617,FBtr0076618	3	4	4	80	3L	8463572	8463862	TCAGTACTTTAGACAACGGC		59	8463903	8463923	CCGAGTATTGTCTTTGTTCAG		58	NA	InUTR
Drosophila melanogaster	50	CG33523	FBgn0053523	FBtr0091478,FBtr0091477,FBtr0091475	1	3	4	93	3L	5921732	5921813	ACGTACAAGATCCAAACCA		58	5921870	5921888	ATATGTTGATGGTGGCCTC		59	NA	
Drosophila melanogaster	50	CG5339	FBgn0034925	FBtr0072220	2	1	1	233	2R	19785292	19785310	CATACTGTCCGAGGAACAG		59	19785020	19785040	GTGATTACGTTGAAGTTCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Obp59a	FBgn0034766	FBtr0071869,FBtr0071870	2	2	2	75	2R	18590240	18590258	CTGCTGATTTGTTTGAGCT		58	18590297	18590315	CTTCACTTAGTCCCTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	3	8	8	99	2R	14032395	14032483	AGGAAAGAATTCTGAGAAGC		57	14032544	14032563	CTCAATCATCGGATACAGAC		57	NA	
Drosophila melanogaster	50	CG10734	FBgn0034082	FBtr0087250	2	1	1	60	2R	12045572	12045592	CGATGAACAGAAGACTTTCAC		59	12045532	12045550	ATAATCGTCGACCTTGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13349	FBgn0033886	FBtr0087611,FBtr0114495,FBtr0114494,FBtr0087610,FBtr0114493	1	5	5	60	2R	9846355	9846375	GATCAAGCAATTCGAGTTGTC		59	9846315	9846334	CTCTAGATTGCCAGAGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	3	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421093	TAGTAAGGTAGCAAAGTAGGGA		59	NA	
Drosophila melanogaster	50	CG1513	FBgn0033463	FBtr0088450	1	1	1	91	2R	5772529	5772547	CATAACATTGGTGAGGGTG		58	5772395	5772474	GTAAGAATAGACCTGCCGT		58	NA	
Drosophila melanogaster	50	CG30373	FBgn0050373	FBtr0088806	1	1	1	60	2R	4051711	4051729	CAACTTGTACGAGCATGTC		58	4051669	4051689	GTACCTGTAGTTGACAGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012	1	6	7	106	2R	3293620	3293714	AAATATGACTTCAAGCCAGC		58	3287508	3293552	CCGGAACTTTCAGAATTTGG		59	NA	
Drosophila melanogaster	50	CG33492	FBgn0040849	FBtr0089605	3	1	1	128	2R	908327	908345	TGACAATTCCTAGCATGGA		58	908435	908679	CAAAGTGACTTACCTCATCAG		58	NA	
Drosophila melanogaster	50	CG10186	FBgn0032797	FBtr0081280	1	1	2	101	2L	19510642	19510660	GATTGTCTATCCGGGAACC		59	19510126	19510577	TCTGTGTAGTTCTTGTGCG		59	NA	
Drosophila melanogaster	50	Socs36E	FBgn0041184	FBtr0081041,FBtr0081040	1	2	2	280	2L	18141991	18142009	AAGTACGTTACAACTGCAC		57	18141236	18141747	TATTGCTTCTGGAAACTGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	B4	FBgn0023407	FBtr0080514,FBtr0080513	1	2	2	121	2L	13535017	13546919	CTCTTAAAGGCTGCATGGA		59	13534914	13534932	TCTTTGTTGACTTCGTGGA		59	NA	InUTR
Drosophila melanogaster	50	Ripalpha	FBgn0032189	FBtr0079962	2	1	1	119	2L	10200228	10200302	GAAATCCAATTGTCCGAACTC		59	10200129	10200147	ATACCACTCGTTGACATCG		59	NA	
Drosophila melanogaster	50	capu	FBgn0000256	FBtr0077511,FBtr0077513,FBtr0077512,FBtr0077510	3	4	4	86	2L	3879058	3884044	AGTTCGAAGGTCAAATGCT		59	3878990	3879009	ATTCCTGATTAGCATCACCG		59	NA	
Drosophila melanogaster	50	CG31958	FBgn0051958	FBtr0077495	3	1	1	67	2L	3786137	3786155	GAGATGATACGCGAGTACG		59	3786185	3786204	ATCATGTTGTTGGACTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8675	FBgn0030834	FBtr0074446	3	1	1	263	X	17142876	17142894	AAGAAGCAAGAGAAGGACC		59	17142631	17142649	TTATTTCGCCTTAGCAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18292	FBgn0030269	FBtr0073437	2	1	1	84	X	11032626	11032644	CCTGAATCTGAGCTCATCG		59	11032692	11032710	GATATTGGCCGAAGTTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15208	FBgn0030247	FBtr0073383	2	1	1	60	X	10794656	10794676	TGAATGACATAAGTCTCTGCC		59	10794698	10794716	TTCATGCTAAGCGAAAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fs(1)h	FBgn0004656	FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119	3	5	5	119	X	7944306	7944477	CAAGAAAGATGAGTCCGCT		59	7944205	7944223	TCACTCGAACTGCTATCAC		59	NA	
Drosophila melanogaster	50	l(1)G0045	FBgn0026702	FBtr0070782	2	1	1	71	X	5518373	5518391	ATTGAGGGAACTGGATTCG		59	5518426	5518511	ACTCCCGCTAATGTATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nmdar2	FBgn0053513	FBtr0070288,FBtr0091454,FBtr0091453	1	3	3	130	X	1385972	1386200	GGGAAGAGATTGGAGTGTG		59	1385860	1385881	GAGGAATGTGATCTTCAAATGG		59	NA	
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089210,FBtr0089215,FBtr0089211,FBtr0089213	3	7	7	83	4	1079778	1079796	TAACCAGACAACGAATCCT		58	1079117	1079732	TATGTAGAAGAGCTCTTGCC		58	NA	
Drosophila melanogaster	50	CG31104	FBgn0051104	FBtr0084825	1	1	1	80	3R	21112346	21112364	AAAGAGAATTGTGGGAGCA		59	21112471	21112491	CCACCATTATAGGAAGAAAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5510	FBgn0039160	FBtr0084576	2	1	1	94	3R	19993858	19994208	CTTGAACGTAAATCACGATGAG		59	19993785	19993803	TGGGATCTTCTTTGTGCTC		59	NA	
Drosophila melanogaster	50	CG14326	FBgn0038528	FBtr0083467	1	1	1	60	3R	13444858	13444941	GTCAAGATTAGCTGTTCGC		58	13444965	13444983	ATTGAGCGTATGAACAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ranbp9	FBgn0037894	FBtr0082386	2	1	1	86	3R	7239747	7239824	TTCTCCTGGCTATTAACGAC		59	7239873	7239891	CATCAGCCACACTAAAGTG		58	NA	
Drosophila melanogaster	50	CG14606	FBgn0037485	FBtr0081603	3	1	1	81	3R	3042364	3042383	AATCTTTGGACTGCTACTCG		59	3042224	3042323	GATCCAGTAGATCATATTGGGT		58	NA	
Drosophila melanogaster	50	CG31522	FBgn0051522	FBtr0078941,FBtr0078942,FBtr0078939	3	3	4	82	3R	272538	273434	ACTCACATAGTGACTCGAG		58	272474	272492	GACATATGTGAGGCAAACG		58	NA	
Drosophila melanogaster	50	CG18281	FBgn0037003	FBtr0078206	2	1	1	73	3L	20494085	20494106	GGATTATTACTCCTGCTATTGC		58	20494140	20494158	CTGCTTAACCAGTACATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eig71Ei	FBgn0014849	FBtr0075574	2	1	1	88	3L	15653060	15653078	CTTTAACGACTACTGTCGC		58	15653130	15653209	GCACAGTAGATAAACAGGC		58	NA	
Drosophila melanogaster	50	CG7272	FBgn0036501	FBtr0075548	1	1	1	84	3L	15496315	15496336	CATCTCCATCAAGAATACTGTG		58	15496446	15496464	AATAGCGAACATGGAGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13481	FBgn0036421	FBtr0113170	1	1	1	60	3L	14362622	14362640	TGCTGGATTCTGATGTCAG		59	14362580	14362598	TTGTTGTTAAGGACCTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32260	FBgn0052260	FBtr0073214	1	1	1	192	3L	4145035	4145126	ATTGCCAGGTAACATCTCG		59	4145282	4145300	AATGGACTTGTAGCTCTGC		59	NA	
Drosophila melanogaster	50	CG13908	FBgn0035178	FBtr0113121	2	1	2	203	3L	990849	990867	ACTATCATCACGCCAACTC		59	991034	991103	GTAGGGTGAATTTCTTGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13575	FBgn0034996	FBtr0072264	1	1	1	60	2R	20143638	20143656	GGAAATGGTTCACATGTGC		59	20143829	20143849	CAGTATGACGTAGTAGAGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10307	FBgn0034655	FBtr0071671	2	1	1	67	2R	17577356	17577432	CTACAGCTAATGGCTTTGC		58	17577463	17577481	CAAATATTGGCGGGATCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hil	FBgn0050147	FBtr0086256,FBtr0086255	2	2	2	96	2R	16502072	16502090	GCTTCAAATGCGTACACTG		59	16500960	16502013	TGTGAACTGCAATAGACCTC		59	NA	
Drosophila melanogaster	50	CG10051	FBgn0034437	FBtr0086521	1	1	1	120	2R	15254197	15254278	GAATGGAAAGACTCTGCTC		57	15254361	15254380	GGTTGTACTCATATCGTACC		57	NA	
Drosophila melanogaster	50	CG15609	FBgn0034180	FBtr0114626,FBtr0114629,FBtr0087019,FBtr0114627,FBtr0114628,FBtr0114625	3	6	6	91	2R	12899519	12899538	TTAAGGTTACCAACCTGACG		59	12899312	12899465	AGACATGTCAATGAGCTCC		59	NA	
Drosophila melanogaster	50	CG8299	FBgn0034052	FBtr0087291	1	1	1	76	2R	11828676	11828694	AAGGTCAGCAAACTGATCC		59	11828618	11828636	CGAGTGATGATCAAACCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fus	FBgn0023441	FBtr0087347,FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087348,FBtr0087343	3	6	6	115	2R	11550675	11550755	TATGGTTATCAATGCACAGG		57	11550579	11550598	TGCCGAACATCATATAATGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Or49a	FBgn0033727	FBtr0087918	2	1	1	63	2R	8281979	8281997	AGTTCTACGTTGTCAGCTC		59	8282022	8282096	GCCTTGGCTAAATTTGTACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12918	FBgn0033477	FBtr0088433	2	1	1	258	2R	5938843	5939055	ACTGATGGAGAAGATCTGC		58	5938603	5938624	GCAGATCTTGATGTCTAAATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	tos	FBgn0015553	FBtr0081131	2	1	1	68	2L	18681088	18681161	TCTTGAGGTAGATGACGAC		58	18681038	18681057	ATAAACATGTGCCTGAAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14024	FBgn0031697	FBtr0079082	3	1	1	185	2L	5313078	5313276	TATATTAGCTGGCTACGATGTG		59	5312914	5312932	TCCAGTTTGTTGCGATAGG		59	NA	
Drosophila melanogaster	50	cbt	FBgn0043364	FBtr0078083	2	1	2	194	2L	478201	479422	AAACAAGTTGGAAATCGTCG		59	478026	478044	CTCATAGCAGGTTGTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR31334	FBgn0051334	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	ban	FBgn0064191	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi28S-3316b	FBgn0082971	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30251	FBgn0050251	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:N5:42Aa	FBgn0011931	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:P:35Bc	FBgn0028910	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	kl-3	FBgn0001314	FBtr0113756	2	1	1	124	YHet	54719	62665	TTCAGTATCCGCAATACAC		57	62753	62771	CTTTAAGGGCAGTACTTCC		57	NA	
Drosophila melanogaster	50	CG40485	FBgn0069973	FBtr0111190,FBtr0111189	1	2	2	60	X	22363899	22363920	GACATTCTTATCAATAACGCCG		59	22363860	22363878	CTACCGACATAGTCAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34145	FBgn0083981	FBtr0110992	1	1	1	65	X	20464604	20468113	CAATTGTCAGAGTGCAAGC		59	20464557	20464575	TAGGGTGAATATGCTGAGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Shawn	FBgn0031039	FBtr0074738,FBtr0074737,FBtr0074739	1	3	3	116	X	19508311	19508329	TGTTTCCTCTACTGCAACG		59	19508409	19508486	GATGAATGCGTCAATGGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG14218	FBgn0031031	FBtr0074770	2	1	1	76	X	19474949	19474967	ATACCTTCTTTAGGTCGCG		59	19474891	19474909	GGAGTCAACTAAGTCTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tao-1	FBgn0031030	FBtr0074773,FBtr0074771,FBtr0074774,FBtr0074772	3	4	4	88	X	19465920	19466010	CTCGAGAATAAGATGGACG		57	19465850	19465869	TCTTTAGTATGCTTCTCGTG		57	NA	
Drosophila melanogaster	50	CG7349	FBgn0030975	FBtr0074648	3	1	1	117	X	18789854	18789872	ATCATACTGGTGGAACAGC		59	18790008	18790027	GTCCTTGAGAAAGTCCAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32548	FBgn0052548	FBtr0074569,FBtr0074568	3	2	2	85	X	18330497	18330515	CCTTCCTCGATTATCAGCG		59	18330430	18330450	ATCGGGATAGTAGTGGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6106	FBgn0030914	FBtr0074553	2	1	1	241	X	18253515	18253533	TAAACGAATCTCAGCTGGA		58	18254113	18254131	GTTGAGGATGTGTATGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32494	FBgn0052494	FBtr0074506	1	1	1	76	X	17894606	17894624	CAATATTTGTCGCCACAGC		59	17894664	17894682	TTTACTGCCTAGTCGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ppk23	FBgn0030844	FBtr0112998,FBtr0100574,FBtr0074491	3	3	3	125	X	17462376	17462395	TTCAACAGTCGTTTCAAGTC		58	17462088	17462223	GATAAAGATACGTGAAGTGCTG		59	NA	
Drosophila melanogaster	50	CG4949	FBgn0030813	FBtr0074380,FBtr0074381	1	2	2	128	X	16973406	16973424	ATCCTTTGTGAATTACCGC		58	16973516	16973534	ATAAGCAGCTTGAACTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4756	FBgn0030788	FBtr0074331	3	1	1	106	X	16682326	16682344	ACTTCAAGGTCCAAACGAG		59	16682636	16682656	GAATGTGATGATCTCCTTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3632	FBgn0030735	FBtr0112988,FBtr0112990,FBtr0112991,FBtr0112989	3	4	4	99	X	16196438	16196950	CATTGTCGATCTTGTGGAG		58	16197013	16197031	ATCCACATAGCCTAACTGG		58	NA	
Drosophila melanogaster	50	CG8974	FBgn0030693	FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186	3	5	5	212	X	15688455	15688537	GATCCACGTAACAAAGTTCC		58	15688197	15688215	CTGTTCATCCTCGTATTGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG6340	FBgn0030648	FBtr0074039	1	1	4	157	X	15377389	15377407	AGAAGACAAAGCCGATGTC		59	15379229	15379247	CTTCTTGTCCTTGTCCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ste:CG33237	FBgn0053237	FBtr0073874	1	1	1	60	X	13953959	13953978	GTATTTCAGCGAGATACTGG		57	13953918	13953936	CAAGCCAGAGGAACTATCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1640	FBgn0030478	FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769	2	6	6	83	X	13268114	13268132	ATTCAACCGTTAGACGTCC		59	13268315	13268334	TATGTTATCCAGTGTGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	IP3K2	FBgn0085388	FBtr0112575,FBtr0112573,FBtr0112574	2	3	3	80	X	13221585	13221603	TATGTGCCCGTTTACAAGG		59	13221715	13221733	ATAGTCACTGAGCAGATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mew	FBgn0004456	FBtr0073731,FBtr0073732	3	2	2	83	X	13109890	13109967	TCACAATAACATAGAGGTGGAG		59	13109828	13109846	ATAATCAGCCACGGTATCG		59	NA	
Drosophila melanogaster	50	CG32645	FBgn0052645	FBtr0073725	2	1	1	60	X	13044432	13044451	ACAAGGAGTTCAACATTTGG		58	13044473	13044997	ATGCTAGATACCACGATCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG2200	FBgn0030447	FBtr0073721	3	1	1	80	X	12988687	12988706	CTGGAGGATCTCTTCAAGAG		58	12988848	12988866	AGTGTACTTGTCGTGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3812	FBgn0030421	FBtr0073689,FBtr0073688	1	2	2	72	X	12663817	12663835	CATCATTGTGGCCAATCAC		59	12663961	12663979	CTTGTTCATCACATGCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15927	FBgn0030389	FBtr0073647	1	1	1	60	X	12349186	12349206	TAACTTGATCGATGACGATGG		59	12349228	12349246	CTTCTGTTCGTTGTGAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10353	FBgn0030349	FBtr0114452	1	1	2	87	X	11777191	11777211	CGTCTGTTAAGAACTAGTAGC		57	11775926	11777144	GTCTGTATGTCCTTGATTTCC		58	NA	
Drosophila melanogaster	50	Karl	FBgn0030334	FBtr0073556,FBtr0073557	2	2	2	82	X	11684958	11684976	CATCCACAGAGGAACTTCC		59	11685019	11685105	GTTCATCGTTATATGCTGATCC		59	NA	
Drosophila melanogaster	50	CG2371	FBgn0030323	FBtr0073533,FBtr0073532,FBtr0073534	1	3	3	63	X	11571813	11571831	GCGAGGATATCAACATCGA		59	11571768	11571787	CTCTCGAACTGATTGTACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32666	FBgn0052666	FBtr0073507,FBtr0073508	2	2	2	126	X	11445268	11445287	GAGACCTTCCTCAACATCTC		59	11445376	11445818	CATTCATGCGATCGTTTGG		59	NA	
Drosophila melanogaster	50	CG11750	FBgn0030294	FBtr0073456	2	1	1	174	X	11253424	11253442	GCTAGAGGGCTACTATCTG		57	11253646	11253664	GAAATCAAAGTCGTTGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1545	FBgn0030259	FBtr0073395	2	1	1	228	X	10953389	10953408	CAACCATAACTGCAATACAC		57	10951822	10952404	CAGTACGGATAAATTGGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG15252	FBgn0030167	FBtr0112970	1	1	2	111	X	9873014	9873091	TTTATTTGGACCTGGAGGC		59	9872921	9872939	ATATTGTCCCAACACGAGG		59	NA	
Drosophila melanogaster	50	CG1354	FBgn0030151	FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386	1	4	4	96	X	9674840	9674858	CCGAATACGATTCGATGCT		59	9674918	9675202	AAGGCCTCAATATCATGGG		59	NA	
Drosophila melanogaster	50	CG15370	FBgn0030107	FBtr0071310	3	1	1	60	X	9120524	9120542	GATAGCTACAACGTGGGTC		59	9120566	9120584	CACTGTACTGGTGATAGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33181	FBgn0053181	FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451	1	5	5	80	X	8408690	8409225	CCTCTGCATAAGTGGTCTG		59	8409269	8409287	ATCGGTTGAAACACTACGA		58	NA	
Drosophila melanogaster	50	CG15336	FBgn0030009	FBtr0071156	3	1	1	61	X	8042078	8042097	GATAATCGGCGACTTATGTG		58	8042121	8042139	TGCAGATTCCAATAGATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Marf	FBgn0029870	FBtr0070909,FBtr0070910	1	2	3	124	X	6263370	6263389	TGGAGTTTAAGTTCAGCTGG		59	6263476	6263563	TACGCTGTGTCCAATACTG		59	NA	
Drosophila melanogaster	50	Act5C	FBgn0000042	FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822	1	4	4	111	X	5797605	5797623	AGGATCTGTATGCCAACAC		59	5797698	5797716	TTGATCTTCATGGTCGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0060	FBgn0027321	FBtr0070842,FBtr0070841	3	2	2	60	X	5637422	5637441	CCATCAGGAGATCATACTGC		59	5637381	5637401	CTCCTTAGTAAACTTTGTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3309	FBgn0029756	FBtr0070798	1	1	1	60	X	5222847	5222865	TGGTTACTTCCAGAAGAGC		58	5222805	5222825	GTAGTACAGATTGAAGAACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	torp4a	FBgn0025615	FBtr0070690	1	1	1	60	X	4543356	4543377	GCAGATGCTATGTATTTGAAGG		59	4543317	4543335	CTTGTCCGAGATACTTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12691	FBgn0029701	FBtr0070646	2	1	1	60	X	4160359	4160377	AGATCACAGTAAGCCTCCA		59	4160401	4160419	CGATAGTTCTTCACTCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15571	FBgn0029696	FBtr0070664	3	1	1	60	X	4111093	4111114	AACATCTACTAACTCCACATCG		59	4111054	4111072	TGTGGAATTCAAACTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2941	FBgn0029686	FBtr0070613	3	1	1	121	X	3833176	3833253	TTCCTAGGCACTGAATTCC		58	3833338	3833356	AATTTGAGAAAGGAGCGTG		58	NA	Nonspecific
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	1	13	13	80	X	2567070	2567088	ATGGAGGGTAATCACACCT		59	2567131	2567221	CTGTATTGAGAGCTCATGCT		59	NA	
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	3	13	13	81	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567131	2567221	CTGTATTGAGAGCTCATGCT		59	NA	
Drosophila melanogaster	50	CG4199	FBgn0025628	FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333	1	4	6	108	X	1965424	1965442	CAAGGAGTACAAGACCACG		59	1962398	1962416	CATGGTTGTACTGGGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Actn	FBgn0000667	FBtr0070343,FBtr0070345	2	2	3	81	X	1924300	1924320	CTGGAGAATCTTAATACTGCC		57	1923951	1924258	TGATCAAATCATCTGGATCC		57	NA	
Drosophila melanogaster	50	arm	FBgn0000117	FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988	3	4	5	93	X	1787500	1787518	AGAAGAAGCATATGAGGGC		59	1786142	1787446	AGTATCATATCCTTGCTGATGG		59	NA	
Drosophila melanogaster	50	CG3056	FBgn0024987	FBtr0070215,FBtr0070214	1	2	2	105	X	1265711	1265729	CAATTACTTGCCACAGGAC		58	1265798	1265956	ATATCCGGTCTTGAAGTCG		58	NA	
Drosophila melanogaster	50	Tsp2A	FBgn0024361	FBtr0070211	3	1	1	60	X	1241733	1241751	TCGGAGTATACGTACTCGA		58	1241775	1241793	CGCAACAACCTATGTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14626	FBgn0040360	FBtr0070200	1	1	1	82	X	1081152	1081894	CTCTATGTTGGTCCCACAG		59	1081940	1081958	AATGGAGTTGCAGAAGAGG		59	NA	
Drosophila melanogaster	50	CG18273	FBgn0029525	FBtr0070094	2	1	1	94	X	378404	378422	AGGACAATGGAAAGCAGAG		59	378265	378346	ATCGCGATAGTTCAACGAG		59	NA	
Drosophila melanogaster	50	cin	FBgn0000316	FBtr0070064,FBtr0070065	2	2	2	81	X	150606	150624	TATGCCATGAAGTCCACTG		59	150666	150807	GCAAAGAATTAGGTGAATCTCC		59	NA	
Drosophila melanogaster	50	CG40682	FBgn0085508	FBtr0113921	1	1	1	139	U	5709303	5709321	GAAGTTATCCGAGGAGCAG		59	5709424	5709442	GCTTATCTTGTTCGGTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40196	FBgn0058196	FBtr0113830,FBtr0113829,FBtr0113831	2	3	3	120	U	1092307	1092325	CAGATCTAAGTTGCGATCC		57	1092152	1092224	TAAAGAGAATTCACTGCTCG		57	NA	
Drosophila melanogaster	50	zfh2	FBgn0004607	FBtr0089070	2	1	1	90	4	558305	558324	GAAGTCGTTTCTGAAGATGC		59	558375	559172	CACCTATAACGGTGATATGGT		59	NA	
Drosophila melanogaster	50	Asator	FBgn0039908	FBtr0089107	2	1	3	80	4	502324	508433	CTACGAGTAGAGGAAACGAC		59	502263	502282	GATCTTGTTTGGAAGAAGGC		59	NA	
Drosophila melanogaster	50	bip2	FBgn0026262	FBtr0089110	2	1	1	82	4	483116	483690	GATTCTCCTGTTACTGATTCTG		58	483055	483073	TTGCAGTAGTTTCGATCCA		58	NA	
Drosophila melanogaster	50	Syt7	FBgn0039900	FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0089139,FBtr0114475	3	6	6	140	4	302454	302472	CTGCAAAGGATAAATGCGG		59	301146	302352	ACACCTTTACGTATGGATCAG		59	NA	
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451	1	4	8	94	4	162671	162692	GCCGCTTAGTTCATTAATATCC		59	162747	162837	GATGAACCCAACAAGTCAC		58	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156	3	9	10	81	4	103362	106346	TCCTAAGATGGGCTTAACTC		58	106387	106408	CATATCTGAACTTAGCATTGGG		58	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	1	14	14	90	3R	27691897	27691915	ATACTGCACCAGATCTTCC		58	27691743	27691843	GATATTGGATGAGGGCCTG		59	NA	
Drosophila melanogaster	50	CG1971	FBgn0039881	FBtr0085847,FBtr0085848	2	2	2	61	3R	27631893	27631912	GGCTTTCTAGAGAAGATTGG		57	27631936	27631954	AAGAGCTGACTTCCTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CstF-50	FBgn0039867	FBtr0085866,FBtr0085865	2	2	2	61	3R	27561810	27561828	ACTTGCGTGAAATATTCGC		59	27561767	27561785	ATGTCACCATCATAGCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12054	FBgn0039831	FBtr0113312	2	1	2	63	3R	27052788	27054424	AACACTGCAACAGAAACCT		59	27054451	27054469	TACTGTTGGGATTGCTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	PH4alphaNE1	FBgn0039780	FBtr0085688	2	1	1	115	3R	26324845	26324863	GAGAACTACCTGACCAACC		59	26324690	26324769	GCATTGAAATTCATCTCCTCAG		59	NA	
Drosophila melanogaster	50	Mlc2	FBgn0002773	FBtr0089747	1	1	2	253	3R	25999491	25999509	AAGAAGACCAAGGAAGAGG		58	25999097	25999115	ATAATACCGTCCTTGTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	RpL32	FBgn0002626	FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555	2	4	5	61	3R	25871413	25871431	CGGATCGATATGCTAAGCT		59	25871308	25871326	CACTCTGTTGTCGATACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14516	FBgn0039640	FBtr0085382,FBtr0085383	3	2	2	95	3R	24969481	24969502	CAAGGGTTCAACTATTATTCGC		59	24969558	24969639	TTGTAAGCCATTTCCTGCA		59	NA	
Drosophila melanogaster	50	CG14260	FBgn0039504	FBtr0085157	1	1	1	69	3R	23091399	23091417	AGAACAAGCGAGTGATCAG		59	23091450	23091468	TAGATGTAGAGGAGCAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14252	FBgn0039462	FBtr0085067	1	1	1	60	3R	22771842	22771861	AATGGAAGGACTATACGCAG		59	22771944	22771963	ATATAAACAGAAGAGCGCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	m2	FBgn0002592	FBtr0084981	3	1	1	177	3R	21842722	21842740	CACATTGATTAGCAGCGTG		59	21842563	21842582	CAGATCCCAGAGATTACTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bai	FBgn0045866	FBtr0084758	1	1	1	60	3R	20865520	20865541	GCTTTATATCCAAAGTTCCTGC		59	20865626	20865644	GTCAAGAGCGATACTTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7016	FBgn0039238	FBtr0084707	3	1	1	71	3R	20689450	20689468	AATGAGTCTAGCACCACTC		58	20689503	20689521	CTCTGGCTTAGGTGTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Miro	FBgn0039140	FBtr0084596,FBtr0084595	3	2	2	129	3R	19861354	19861372	AACTGTATACCAAGCTGGC		59	19860659	19860678	ATAAATCCCAGCATGGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	ofs	FBgn0039122	FBtr0089623	3	1	1	95	3R	19639802	19639820	CAAGGAGCAATTGACAAGC		59	19639527	19639745	TTGATGTCAGATTCAGGATCG		59	NA	
Drosophila melanogaster	50	Plip	FBgn0039111	FBtr0084454,FBtr0084453	2	2	2	111	3R	19584916	19584934	CTAAGTTCCTCCTACCAGC		58	19585008	19585089	ATCCGTTCTTCATCATGAGG		59	NA	
Drosophila melanogaster	50	CG34289	FBgn0085318	FBtr0112485	1	1	1	68	3R	19332963	19333162	GATGAACAGAGATATCCGC		57	19332913	19332931	ATACTTCTTTAAGCACGCC		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG4704	FBgn0039029	FBtr0084314	1	1	1	60	3R	18670480	18670501	TACGGATCAGTTTCAGAATCTC		59	18670385	18670405	GAAGTCCAATTCAGAGATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	loco	FBgn0020278	FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273	3	4	4	86	3R	18446567	18446652	GCACCAAGATGAACTACTC		57	18446499	18446517	AAGTCGAAGTTGATTTCGG		58	NA	
Drosophila melanogaster	50	Eip93F	FBgn0013948	FBtr0112874,FBtr0084169	3	2	2	132	3R	17821483	17821568	AGAAGATTCTGAGAACAACC		57	17821663	17821681	GTTAACACAGAAGTTGCAC		57	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	3	22	22	87	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202451	17202547	TTGTTCAGGAATACGATAGC		57	NA	
Drosophila melanogaster	50	CG4562	FBgn0038740	FBtr0083859,FBtr0113250	3	2	2	112	3R	15695216	15695234	AGTACTTTGGAGCGAATGG		59	15695061	15695140	TTTGTTCACCCAGTAGGAC		59	NA	
Drosophila melanogaster	50	CG31216	FBgn0051216	FBtr0083786	2	1	1	86	3R	15513009	15513908	GACAAGGACAGTGATGACC		59	15513958	15513976	GTAGATGTGTCCCTTGTCG		59	NA	
Drosophila melanogaster	50	CG6255	FBgn0038708	FBtr0083769	3	1	1	60	3R	15288547	15288565	TTCTAGTCCAGGGATTCAC		57	15288505	15288524	TACTTTATGGACTCCTCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	P5cr	FBgn0015781	FBtr0083713	2	1	1	61	3R	14855097	14855115	TTTCATCTGCGTAAAGCCA		59	14855139	14855158	CGTGCTTGTATTTAAGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	VAChT	FBgn0015323	FBtr0083671	2	1	1	60	3R	14538929	14538947	CCATCATGTTCTTCTCGAC		57	14538971	14538989	AAGAACAGGACACTGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7671	FBgn0038609	FBtr0083577	1	1	1	60	3R	14193265	14193283	TTATCCCGCCTCCTATCTC		59	14193307	14193325	TTGATGGAAGCCTATCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	14-3-3epsilon	FBgn0020238	FBtr0083567,FBtr0083565,FBtr0083566,FBtr0083568	3	4	4	80	3R	14073561	14073579	TATTGCCATGAACGATCTG		57	14073621	14073709	ATCTCATAGTAGAACACCGAG		58	NA	
Drosophila melanogaster	50	cpo	FBgn0000363	FBtr0083534,FBtr0083536,FBtr0100377,FBtr0083535,FBtr0083537	2	5	6	175	3R	13793462	13793481	ACGCCATAATGGAGAATCAG		59	13832725	13832808	TTCATAGCCCTCATAGGCT		59	NA	
Drosophila melanogaster	50	Fsh	FBgn0016650	FBtr0083510,FBtr0083509	2	2	2	81	3R	13555397	13555892	CACCGTGGACATTATACGA		59	13555935	13555955	CAGAATATTATGAGGTGGCAG		58	NA	
Drosophila melanogaster	50	CG5866	FBgn0038508	FBtr0083440	1	1	1	60	3R	13241763	13241781	TGTCTGAATCGCATGATCC		59	13241804	13241823	GGATGTGAACCATGATAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333	3	6	8	188	3R	12119862	12122388	TAGCGAAACAACTTCTCCA		58	12122599	12122617	CCCGATATGGTATATGCCT		58	NA	
Drosophila melanogaster	50	Fer2	FBgn0038402	FBtr0083280	1	1	1	96	3R	11975761	11975780	CTACAAACCGACTACGATCC		59	11975629	11975704	CTGTGAGATCACTCGTATTCC		59	NA	
Drosophila melanogaster	50	CG14867	FBgn0038333	FBtr0083095	1	1	1	240	3R	11207278	11207296	GAGAATCTGCAGTCGAGAG		59	11207559	11207577	CAATCTCGGATCCTTGGTC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Art3	FBgn0038306	FBtr0083135,FBtr0083134	3	2	2	60	3R	11054030	11054049	ATGTTGAACTGATCAAGGGA		58	11053989	11054009	ATGTCGTATTTAGTCTCTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cv-c	FBgn0086901	FBtr0112632,FBtr0112630	3	2	3	153	3R	10235277	10235546	GACAATAACTCCACATCGT		57	10235142	10235160	GAGACATATCCTTTGGTGG		57	NA	
Drosophila melanogaster	50	CG3259	FBgn0038221	FBtr0082924	1	1	1	80	3R	10128427	10128447	GATGTTCGAGAACATAACCAG		58	10128488	10128566	TTGGTTGTTAGTTTGGTTGC		59	NA	
Drosophila melanogaster	50	twf	FBgn0038206	FBtr0082891	3	1	1	122	3R	9948581	9948700	TTTCGATCGAGAATGAGCA		59	9948786	9948804	AGAGAATATAGCAGGGCAC		58	NA	
Drosophila melanogaster	50	primo-1	FBgn0040077	FBtr0091747,FBtr0091748	2	2	3	103	3R	9535869	9536042	GATCCCTACTATGAGCGTG		59	9535784	9535802	ATCATTCATTTCTGGAGGC		57	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	2	8	8	284	3R	9504400	9504475	AACACGACGTAAATCAGGA		58	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Hrb87F	FBgn0004237	FBtr0082851	1	1	2	87	3R	9484278	9484368	TTCAACAAGGGTAACCAGG		59	9484209	9484227	CTCCCATATTTCCACCCTG		59	NA	
Drosophila melanogaster	50	Act87E	FBgn0000046	FBtr0082786,FBtr0082785	3	2	2	60	3R	9252474	9252493	AGAAGGACTCCTATGTTGGT		59	9252515	9252534	TATTTCAGGGTGAGGATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8863	FBgn0038145	FBtr0082751,FBtr0082753,FBtr0082752,FBtr0082755	2	4	5	138	3R	9210185	9210203	CAGTTCGAGGTGATCTTCC		59	9210395	9210413	GTTGCTTGGGATCAAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tango9	FBgn0037971	FBtr0082508	1	1	1	80	3R	7799941	7800042	ATCGTCGTGGAGTTATATCC		58	7799880	7799898	GCAATAGCATGCTAACAGG		58	NA	
Drosophila melanogaster	50	Hsp70Ab	FBgn0013276	FBtr0082482	1	1	1	60	3R	7784774	7784792	TTTCAAGGTTGTAAGCGAC		58	7784816	7784834	GGACTCACCCTTATACTCC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31374	FBgn0051374	FBtr0082400,FBtr0082401,FBtr0082399	2	3	3	85	3R	7264081	7264158	AGAGTATCCTCAAGGAGGAG		59	7264015	7264033	TTCGTCTAGCTTCATGGAG		58	NA	
Drosophila melanogaster	50	CG5270	FBgn0037897	FBtr0082387,FBtr0082388	1	2	2	80	3R	7254515	7254534	AGTTCTTGGACAAGTGTGAG		59	7254575	7254656	CTAGTCGAATCTGCTTCAGAG		59	NA	
Drosophila melanogaster	50	Ugt86Dh	FBgn0040252	FBtr0082340	3	1	1	60	3R	7001392	7001410	ATTCTCGTACACCTTTGGC		59	7001432	7001452	GACAAGATTCCTTAAGAACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4570	FBgn0037844	FBtr0082287	3	1	1	64	3R	6683254	6683272	ACATCTTCAACATGGACGA		58	6683300	6683318	AAGGAAGATCTCCTTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rbp1	FBgn0010252	FBtr0082277	2	1	4	104	3R	6610550	6610568	CACTAGGATTCGCGTAGAG		59	6610636	6611133	GGAGTTATCCTGTAGCGTC		59	NA	
Drosophila melanogaster	50	CG33631	FBgn0053631	FBtr0091608	3	1	1	60	3R	5890200	5890218	CGTGTGGGAAACTACTCAG		59	5890239	5890260	GTAGAACCTGAGGATAGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9458	FBgn0037765	FBtr0082152	2	1	1	60	3R	5645026	5645045	GGTCATGGGTTCTTTATGTG		58	5644985	5645006	AGTAGCTGTACATCATGATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16899	FBgn0037735	FBtr0113209	2	1	1	118	3R	5554050	5554068	AAGAGCAGGTCTTGATGTG		59	5553798	5553885	GGGAGTCAATTATAGCCTGTC		59	NA	
Drosophila melanogaster	50	eca	FBgn0069242	FBtr0082098	2	1	1	141	3R	5510535	5510553	CAGAACTACCAGCGATACC		59	5510412	5510430	AGAAGCTCTTGAGATGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Man-II	FBgn0011740	FBtr0082031	3	1	1	83	3R	5239048	5239067	GAAATCTCCTACTTTGCTCG		58	5239110	5239463	CTGTCCATTCTTTACAATGGAC		59	NA	
Drosophila melanogaster	50	CG18473	FBgn0037683	FBtr0082025	3	1	1	185	3R	5190249	5190324	ATCGATTGACCTCCTATGG		58	5190471	5190491	CATGATAAGAGATGCTACCAG		57	NA	InUTR
Drosophila melanogaster	50	bel	FBgn0000171	FBtr0081888	2	1	1	60	3R	4484087	4484105	CTGGTCTGGACTTGAATGG		59	4484045	4484063	GAAGTCTTGCTGGTTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dhod	FBgn0000447	FBtr0081890,FBtr0081891,FBtr0081889	3	3	3	60	3R	4477795	4477813	ATTAATGTGAGCAGTCCGA		58	4477753	4477771	TTAGCTTCTCCTTGCTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9684	FBgn0037583	FBtr0081853	2	1	1	81	3R	4187677	4187697	GTAATCGTTGCTATATTCGCG		59	4187390	4187637	GCTATGGTATTAACCTTCTTGC		59	NA	
Drosophila melanogaster	50	Poxm	FBgn0003129	FBtr0111026	3	1	1	124	3R	4146365	4146383	GTGGTCAACTACATCAGGG		59	4146259	4146277	GATATGGAGCTCACACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Poxm	FBgn0003129	FBtr0111026	1	1	1	115	3R	4146356	4146374	TACATCAGGGAACTGAAGC		58	4146259	4146277	GATATGGAGCTCACACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7549	FBgn0037559	FBtr0081825,FBtr0081826,FBtr0110951	1	3	3	85	3R	4085351	4085369	CACCTACAAGCTTCTCCTG		59	4085418	4085507	TACGTGGAATACCATGCAG		59	NA	
Drosophila melanogaster	50	CG7918	FBgn0037546	FBtr0081789	3	1	1	129	3R	3908754	3908772	GTATCATTCTTACGGTGGG		57	3908865	3908951	GAAACGGTTCCTATTAGCA		57	NA	
Drosophila melanogaster	50	CG2943	FBgn0037530	FBtr0081765	2	1	1	115	3R	3731985	3732003	ACAAGGACCAATCGATCTG		59	3731805	3731907	ATTGATCCTGAGGATTCCAG		58	NA	
Drosophila melanogaster	50	alpha-Est7	FBgn0015575	FBtr0081550	1	1	2	179	3R	3346786	3346863	GGCTTTGGGATTTATGAGTC		58	3346626	3346644	ATCATGTAGTGAGTGGAGG		58	NA	
Drosophila melanogaster	50	CG31544	FBgn0051544	FBtr0081532	2	1	1	88	3R	3245413	3245431	AAACCTGAAACACCTTCAG		57	3245530	3245550	CAGAGATTAAGATCACTACCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG10101	FBgn0037501	FBtr0081531	2	1	1	171	3R	3233943	3233961	AGCTTAACGGATAAGTGGG		59	3234096	3234174	GAAAGTGGATGTTCTGGGT		59	NA	
Drosophila melanogaster	50	MstProx	FBgn0015770	FBtr0081585	3	1	1	60	3R	3194755	3194773	TTACCCAATACGTGCAGTG		59	3194713	3194732	GAAACGTGTTACTGTCTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi2	FBgn0037410	FBtr0078592,FBtr0078593	1	2	2	139	3R	2037522	2037818	CAAGGACCAGTACAAGCTC		59	2037921	2037939	ATTTCAGCAGCTGATTCCA		59	NA	
Drosophila melanogaster	50	CG1427	FBgn0037347	FBtr0078702,FBtr0078703	3	2	2	83	3R	1427574	1427643	TATAGCCTGCAAACTCGTG		59	1427689	1427708	GGTTGTGCCTCTAGTAAGTC		59	NA	
Drosophila melanogaster	50	Vha26	FBgn0015324	FBtr0078701,FBtr0078700	2	2	2	81	3R	1418432	1418451	AGAAGGAGAAGCAAGTTGAG		59	1418495	1418591	ACTTTCAGCACCTTCAGAC		59	NA	Nonspecific
Drosophila melanogaster	50	CG2663	FBgn0037323	FBtr0078795,FBtr0078796	2	2	2	257	3R	1227160	1227241	TACTGGACTATGTGCACTG		58	1226921	1226939	TCAGGAACTTCTTCACCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	hd	FBgn0086695	FBtr0078802	1	1	1	61	3R	1198927	1198945	GACTTTAGCGACAACTCCT		59	1198884	1198902	TAGCTAAAGAATCCCTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1161	FBgn0037313	FBtr0100434	2	1	2	81	3R	1181886	1181906	GTATAGCCTCCTAGTTACAGC		59	1181949	1182155	TGGTTCATCTAGTTGAGCC		58	NA	
Drosophila melanogaster	50	Mms19	FBgn0037301	FBtr0078778	1	1	1	64	3R	1061429	1061447	ATACAAGGCTCAGCATACC		59	1061589	1061607	TTGTCACATCGTAGAGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33217	FBgn0053217	FBtr0070045	3	1	1	93	3L	23119449	23119468	TGCAAATTACCTGAGTTGTG		58	23119839	23119858	TTGACACATTACCGTCACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7133	FBgn0037150	FBtr0078485	1	1	1	60	3L	22067407	22067426	TCTACGAAGATCACTACCAG		57	22067366	22067384	TTAATCTCACTGTCGGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL15	FBgn0036990	FBtr0078227	1	1	1	60	3L	20428516	20428534	GGAGTACCTATTCCTAGCC		57	20428474	20428494	GATCCGTATAGTAGTCCACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6597	FBgn0036967	FBtr0074838,FBtr0074837	2	2	2	98	3L	20296363	20296381	ACTATTAGCGACAACATGG		57	20296443	20300946	CAATCTGATATGGCGTCTG		58	NA	
Drosophila melanogaster	50	CG7017	FBgn0036951	FBtr0074856	1	1	1	60	3L	20203971	20203989	GACAGACTTAACGTACGCT		59	20203929	20203947	TTACGTAGGTGATGTTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32221	FBgn0052221	FBtr0074883	1	1	1	60	3L	19828249	19828269	CCGTATTTATTGAGGATGAGC		58	19828291	19828309	TGGTGCTCTTGTAGTTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nes	FBgn0026630	FBtr0075021,FBtr0075020,FBtr0075019	3	3	3	87	3L	19251647	19251665	ATACATGGTTGTGAGCACC		59	19251405	19251423	CGAGTTGTTCAGAATGTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Mkp3	FBgn0036844	FBtr0075035,FBtr0075036	3	2	2	63	3L	19062620	19062641	GATCACTACTCACAAGATTTGG		58	19062374	19062596	GCGCTTCCTCTATAAACTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG34256	FBgn0085285	FBtr0112450	1	1	1	60	3L	18982211	18982230	AGATGGCTATTTATACGCGA		58	18982170	18982190	GCAGCTATATCTTCGAGAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13725	FBgn0036708	FBtr0075248	1	1	1	60	3L	17318391	17318412	ACGGGATATTAGATCTCTTCTG		58	17318352	17318371	GTCAGCGGAATATTCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GXIVsPLA2	FBgn0036545	FBtr0075509,FBtr0075508	1	2	2	64	3L	15948605	15948623	AACTGCATATACCAGTGCC		59	15948714	15948732	TTATTCTGAACCGCTCTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12304	FBgn0036515	FBtr0075565,FBtr0075566	2	2	2	61	3L	15577530	15577748	ATTAAAGGAGGTGCCACTG		59	15577772	15577791	CATAGGGTATGAAGTTGGGA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5392	FBgn0036463	FBtr0075671	1	1	1	60	3L	15004306	15004327	TGTGGAATCTATAAGATCACCC		59	15001065	15001083	GACCTGATTGCAACATGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Trl	FBgn0013263	FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704	1	8	9	198	3L	14747639	14750013	CTTGCTAAAGAATACACCATGC		59	14747462	14747480	GTAGTCGTCCTTGGTAACC		59	NA	
Drosophila melanogaster	50	CG4613	FBgn0036427	FBtr0075725	2	1	1	180	3L	14513252	14513270	GTACAGGTCCATGATCGTG		59	14513019	14513037	AGTATAGACACCAGGAGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9592	FBgn0036426	FBtr0075717	3	1	1	60	3L	14511104	14511122	ATAGAAGACCTTGAGCTGC		59	14511145	14511164	CTAATTGAGCTCTACACGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8100	FBgn0036410	FBtr0075779	1	1	1	60	3L	14078216	14078236	GATATTCAAGTTAGTCGCCTG		58	14078258	14078276	GATTGATGAGATCCGTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10089	FBgn0036369	FBtr0075822,FBtr0075823,FBtr0075820,FBtr0075821	1	4	4	135	3L	13462085	13462103	AAGATCTCGCACATCATCG		59	13461910	13461928	GTATGAAGTCGTTGCAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Syx13	FBgn0036341	FBtr0075886	2	1	1	67	3L	13038637	13038655	TGTCAACCAGATCATGACC		59	13038686	13039325	CGATGAAATCCATCTGCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11560	FBgn0036249	FBtr0075993	3	1	1	62	3L	12113456	12113475	ACGTACGGTATATCAAGCAG		59	12113500	12113518	GATCATGGTCGTAGGAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6793	FBgn0036242	FBtr0076051	3	1	1	60	3L	12036984	12037002	AAACCATTTATTCGCGCTG		59	12037025	12037044	GTATCTCTGCTCCTATCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34239	FBgn0085268	FBtr0112433	2	1	1	71	3L	11033583	11033601	AGATGTCCTTGAAACGTGG		59	11033530	11033548	CTAACGAGGTGGTCATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14160	FBgn0036066	FBtr0076316,FBtr0113160	3	2	2	234	3L	10082166	10082184	CTAATGTGGAAATACCGCC		58	10081408	10081906	CACTGGAGGTATATGCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8336	FBgn0036020	FBtr0076384,FBtr0076386,FBtr0076385	1	3	3	122	3L	9624229	9624301	CAAGTTCACAGGAGATGGG		59	9624387	9624405	TAGTATCGATTCGCCTTGC		59	NA	
Drosophila melanogaster	50	CG32043	FBgn0052043	FBtr0114368,FBtr0076465,FBtr0114367,FBtr0076466	1	4	4	107	3L	9463441	9463459	AATTCGCTCGATATCTGGG		59	9463530	9463670	CCTTCGTGTAGATTTCCGT		59	NA	
Drosophila melanogaster	50	CG3967	FBgn0035989	FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480	1	5	5	116	3L	9411532	9411550	AACAATTTCGTGCTCTACG		58	9410905	9411452	TGTGTTAGGACTGTTTGTG		57	NA	
Drosophila melanogaster	50	PGRP-LA	FBgn0035975	FBtr0076432,FBtr0076435	1	2	4	180	3L	9329862	9329880	GATAAGTCGCCATCTAGGC		59	9330024	9330094	GATTCGGAAACGTTTGGTG		59	NA	
Drosophila melanogaster	50	Prm	FBgn0003149	FBtr0076593,FBtr0076594	1	2	4	143	3L	8732792	8732810	CATCATCCTGTACGAGACC		59	8732582	8732686	TCATGAAGATCATCTCCCAG		58	NA	
Drosophila melanogaster	50	CG32352	FBgn0052352	FBtr0076628,FBtr0076629,FBtr0076630	3	3	3	189	3L	8581743	8581761	GACATCAGTCCAGATCTGC		59	8581912	8586580	CGTATTCATGATCACTCTCGT		59	NA	
Drosophila melanogaster	50	CG7120	FBgn0035888	FBtr0076609	1	1	1	86	3L	8393713	8393731	ATCTTATCAGAGCCATGCC		59	8393779	8393858	TGTCGTCCACCTTATTATAGC		59	NA	
Drosophila melanogaster	50	CG7188	FBgn0035871	FBtr0076711,FBtr0076712	3	2	2	109	3L	8301271	8301289	AGTACCTCTATCTGGGTGG		59	8301053	8301200	GTAAAGTTGAGTCACTTGCAC		59	NA	
Drosophila melanogaster	50	CG7387	FBgn0035852	FBtr0076723	3	1	1	60	3L	8184994	8185012	CTAGCGACTATTTCCGACG		59	8184952	8184971	GAGATGTTTAGGTGCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mthl7	FBgn0035847	FBtr0076726,FBtr0076727	1	2	2	107	3L	8172115	8172135	CTGACAGCCATTTACATTAGG		58	8171965	8172046	CTGTAGGTAAGTCTGGCTG		59	NA	
Drosophila melanogaster	50	exex	FBgn0041156	FBtr0076751	1	1	1	296	3L	7942377	7943260	CATGTCGAGATCAGAGTCG		59	7943520	7943673	TTATGACCCATGGGTATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	SP1173	FBgn0035710	FBtr0076960,FBtr0076959,FBtr0076958	2	3	4	88	3L	6685394	6685480	TAATAACCGGTCTTACAGCT		58	6685325	6685343	AGTAATGGTCCGGTATTCC		58	NA	
Drosophila melanogaster	50	CG33993	FBgn0053993	FBtr0100046	3	1	1	185	3L	5927082	5927163	CAAGATAAAGGGCTTCACCA		59	5926916	5926934	CCATACATCTCGAAGTCCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12493	FBgn0035571	FBtr0073363	3	1	1	60	3L	4753104	4753123	CGTGATAATCGACAACATGC		59	4753063	4753082	AATGTTAGCCACATTCTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15021	FBgn0035544	FBtr0073301	3	1	1	165	3L	4437762	4437780	ATCTGAGTATTTGCCACCT		58	4437909	4437927	ATAAGTAGGTCCTGGTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gad1	FBgn0004516	FBtr0073276,FBtr0073277,FBtr0073275	1	3	3	80	3L	4082635	4084743	ACTGACGGCATATGATCTC		58	4082573	4082591	ACATCGATTACCTTCAGCA		58	NA	
Drosophila melanogaster	50	CG11591	FBgn0035491	FBtr0073281	1	1	1	119	3L	4047185	4047203	CTGCTGAAGAACAAGAACC		58	4047084	4047102	ACAGTTCGTCGTGATAAGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133	2	5	11	192	3L	3578467	3593333	TTGCAGATATGGAGACTGG		58	3593487	3593507	CTGTTTGTTCAGAAAGACCTC		59	NA	
Drosophila melanogaster	50	CG33159	FBgn0053159	FBtr0073104	2	1	1	60	3L	3204331	3204349	ATTTCGGAAGTTCCGTACC		59	3204289	3204310	ATCCTCCACAGATAAAGTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32278	FBgn0052278	FBtr0073033	3	1	1	81	3L	3171095	3171170	AAGCTCAAGCAGATCAAGG		59	3171214	3171233	CCAGATCCTTGTGTAGAGTC		59	NA	Nonspecific
Drosophila melanogaster	50	aly	FBgn0004372	FBtr0073006	2	1	1	96	3L	3026049	3026067	GTAGATGTTTCGGAGGACG		59	3025908	3025992	GGAAATTGTACAATCTCTTGCC		59	NA	
Drosophila melanogaster	50	Psa	FBgn0035226	FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697	1	6	6	113	3L	1520667	1520685	GAGACCTTTGTGCTAGTGG		59	1520761	1521150	CATAGTTACCAGATTGCCGA		59	NA	
Drosophila melanogaster	50	scf	FBgn0025682	FBtr0089942,FBtr0089940,FBtr0089941	2	3	3	60	3L	1299622	1299641	ATGGTTATTTGAACGAGGAG		57	1299664	1299682	GAATGATCGAAGTCATGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trio	FBgn0024277	FBtr0072645,FBtr0072644	2	2	6	101	3L	1024539	1024557	ATGAGACTAAGTTTGCCGT		58	1024398	1024474	TAACCCAAATCTGCTTGGT		59	NA	
Drosophila melanogaster	50	MED30	FBgn0035149	FBtr0072558	3	1	1	61	3L	653281	653299	ATCTACGAGAAGTGCAACG		59	653238	653256	TAGGGAATCAGACTCTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16940	FBgn0035111	FBtr0072486,FBtr0072487,FBtr0072485	1	3	3	80	3L	215571	215591	ATACACTCACTTTACTAGCCC		58	215691	215709	CAATATTTAAGTGCGGCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	p130CAS	FBgn0035101	FBtr0113120,FBtr0072474	1	2	3	101	3L	168759	168777	CAAACTCAAATTCGGGAGG		58	168842	172070	GTGTGATTACCTTTGTCGG		58	NA	
Drosophila melanogaster	50	itp	FBgn0035023	FBtr0072306	2	1	2	81	2R	20443081	20443813	CACCGATTATGCAAGAAAGAC		59	20443853	20443874	TTTCCTCTTCGGGTATTAACAG		59	NA	
Drosophila melanogaster	50	CG10904	FBgn0034945	FBtr0072205	3	1	1	60	2R	19857208	19857226	GATCGAGATTCGGAGAAGG		59	19857166	19857185	ATCGTAGGAACATCAACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fmo-1	FBgn0034943	FBtr0072150	1	1	1	134	2R	19851708	19851726	TACTACAACGGATCCAACG		59	19851824	19851906	ATAGTCGATTTGCTTGGGA		58	NA	
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	2	8	8	81	2R	19817734	19817752	TCCATCTTCCTTACTGCTG		58	19817612	19817691	CATCAGTAACCAAGTTAACCC		58	NA	
Drosophila melanogaster	50	PHDP	FBgn0025334	FBtr0072224	3	1	1	95	2R	19771317	19771337	ACTACCCAGATATCTACACCA		59	19770974	19770992	ACTTGGCTCTTCTGTTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	TBPH	FBgn0025790	FBtr0089627,FBtr0089626,FBtr0089625,FBtr0089624	1	4	4	143	2R	19748031	19748104	CATTATCAAGGGCGTTTCG		59	19747906	19747924	TTCATGTGGTTACCCTGTG		59	NA	
Drosophila melanogaster	50	skpF	FBgn0034863	FBtr0072022	3	1	1	169	2R	19346183	19346201	CATCAAATTGCAGTCCTCC		58	19346032	19346051	AAATGAGGACCTTCTTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3520	FBgn0034859	FBtr0072027	1	1	1	80	2R	19284605	19284680	TCAGGAGGCTAAGATATACGA		59	19284545	19284563	CTGAAGACATCGGCATAGG		59	NA	
Drosophila melanogaster	50	Gr59b	FBgn0045482	FBtr0071965	1	1	1	60	2R	18970570	18970589	GCTGCTTGGACTACTATCTC		59	18970612	18970630	GAATCGTGGTACTCCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k09913	FBgn0021979	FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961	2	4	4	100	2R	18958340	18958358	GAGATGGGATTCGATGTGG		59	18958498	18958516	AGGAATCGAATAGTCTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3788	FBgn0034800	FBtr0071995	3	1	1	81	2R	18820692	18820710	GACATACTCTACCACCTGG		58	18820558	18820647	CCATGCATACAAACCTCAC		58	NA	
Drosophila melanogaster	50	CG13530	FBgn0034777	FBtr0071915	1	1	1	167	2R	18664574	18664592	TCACCATTTCTCCTATGGC		59	18664084	18664443	TTTCGCAGATCATTTGGTG		58	NA	Nonspecific
Drosophila melanogaster	50	Rtf1	FBgn0034722	FBtr0071820	2	1	1	173	2R	18264934	18264952	CGAAGATGACATGCAACTG		59	18265089	18265164	TTCGTATTGACTGGTAGCG		59	NA	
Drosophila melanogaster	50	CG5625	FBgn0034708	FBtr0071771,FBtr0071772	2	2	2	82	2R	18075291	18075365	ACATGAACAACATCTCCCA		58	18075408	18075429	GTTGTTGTAGAAGTCGATACAG		58	NA	
Drosophila melanogaster	50	CG13502	FBgn0034692	FBtr0071799,FBtr0113103	3	2	2	66	2R	17974427	17974445	ACTTCGTCGACTTCTACAC		59	17974379	17974397	TTGATGTCAAATGCACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6393	FBgn0034685	FBtr0071752,FBtr0071751,FBtr0071753,FBtr0071750	1	4	4	79	2R	17956399	17956417	GCGATCGTGATGTTTAACG		59	17956459	17956478	TTTGACTTGTTCATCTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13501	FBgn0034684	FBtr0071804	2	1	1	60	2R	17947774	17947793	AGCTATCATTGAAATGGACC		57	17947669	17947689	CAATCTCATACGCATAAAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10320	FBgn0034645	FBtr0113102,FBtr0071663,FBtr0113101	1	3	3	213	2R	17545965	17545983	ATTGAAGGATCCATGGCTG		59	17546219	17546237	CTTATCTCCGTGTTCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fkbp13	FBgn0010470	FBtr0071702,FBtr0071703	2	2	2	70	2R	17375559	17375578	CAATGTGTTCAAGGAGATCG		58	17375335	17375526	TTAGATACTCGCTGACCTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	Acox57D-d	FBgn0034629	FBtr0071607	1	1	1	115	2R	17277627	17277645	AGGAGGTCTACAATTCCAC		58	17277724	17277803	ATTGAATAGTCCTCCAGGC		58	NA	
Drosophila melanogaster	50	EfSec	FBgn0034627	FBtr0071608	3	1	1	60	2R	17273039	17273060	ACTTAGAGAAGCCTACTTTCAG		59	17273000	17273018	AACGTACATGAAGAGTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11180	FBgn0034528	FBtr0086254	1	1	1	60	2R	16508991	16509009	GCTGTCGATAATCGAAAGG		58	16508949	16508967	TCTTGTCAGCACTTACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bl	FBgn0015907	FBtr0086219	1	1	4	87	2R	16483305	16485961	AAGATGAGGACTCAGAACC		58	16486011	16486030	CTCCTCAAAGTATTTCAGCA		57	NA	InUTR
Drosophila melanogaster	50	CG15905	FBgn0034462	FBtr0086491	2	1	1	60	2R	15534461	15534480	CTCGATCCAAGGATATACCC		58	15534420	15534438	GGTGGCGTAATTAAAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494	2	7	7	152	2R	15418202	15419689	CTATTGAGGGTAAAGGCAC		57	15418068	15418087	CTCAATTGTAGATGTCCACC		57	NA	
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0086456,FBtr0086451,FBtr0100392,FBtr0086457,FBtr0086454	3	14	15	97	2R	15359155	15359173	ACAAGTGGATGAACATGGG		59	15359234	15360334	GACTAGAGCTTCTATCCGC		59	NA	
Drosophila melanogaster	50	rib	FBgn0003254	FBtr0086512	1	1	1	74	2R	15166377	15166395	CTCTGTCTACGAATCAGCC		59	15166433	15166451	AGAAGCATGCTTGAAATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33454	FBgn0053454	FBtr0086565	1	1	1	86	2R	15138745	15138763	AACATCAACCATTCTTGCC		58	15138616	15138634	ATCTCCAGAGGGAAATGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15111	FBgn0034419	FBtr0086581,FBtr0086580	2	2	2	68	2R	15027275	15027293	TATTCCGTAACGTTCCAGC		59	15027388	15027406	GAGATCAAGTCCTTTGGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	GstE9	FBgn0063491	FBtr0086677	2	1	1	61	2R	14296673	14296693	CCTTCAGTATGAGTATAGGCT		58	14296716	14296734	TGAACTCCTTCGTCTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	elk	FBgn0011589	FBtr0086802	3	1	1	85	2R	13809521	13811139	ATATTAAGGCGCTAACCTACTG		59	13811183	13811203	CTGATACTCCGGATATAAGCG		59	NA	
Drosophila melanogaster	50	CG30460	FBgn0050460	FBtr0087011,FBtr0087012,FBtr0087009,FBtr0087010,FBtr0113378	3	5	5	109	2R	12955106	12955124	AGTTAAGCAGTCTCGATGG		59	12954944	12955033	ATAAGGTGAGTTGCTGCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG15709	FBgn0034100	FBtr0087186	2	1	1	61	2R	12141949	12141967	GCGATTCCAGTTATGTGGA		59	12141744	12141762	AATTGATTTGCAGTAGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dg	FBgn0034072	FBtr0087258,FBtr0087257,FBtr0087256	2	3	3	101	2R	11972594	11972679	CTTTATGGCCTACCTCTGG		59	11972511	11972529	ACTTATCTCCACGGTTTCC		58	NA	
Drosophila melanogaster	50	CG8405	FBgn0034071	FBtr0087210	1	1	1	80	2R	11936758	11936841	TGTTTATAGTCGACCTGCTG		59	11936884	11936902	ATATGACAGTGAGCAACGG		59	NA	
Drosophila melanogaster	50	CG30084	FBgn0083919	FBtr0113484,FBtr0111048,FBtr0100388,FBtr0100387,FBtr0087315	2	5	6	80	2R	11652678	11652696	TATCCTGAATAAGGCAGCC		58	11651323	11652635	ATAAAGGGTCCTCTGATCTG		58	NA	
Drosophila melanogaster	50	CG30080	FBgn0050080	FBtr0087319	1	1	1	86	2R	11588822	11588895	TTCTCCTAATGGCGATTGG		59	11588754	11588774	CTAACTGGGAAATTCGTTGAG		58	NA	
Drosophila melanogaster	50	CG12964	FBgn0034022	FBtr0087358	3	1	1	92	2R	11376845	11377060	GTGCAGTTGCTCAATATCC		58	11376771	11376789	TGATGATCTCGATGATGGG		58	NA	Nonspecific
Drosophila melanogaster	50	Obp51a	FBgn0043530	FBtr0087420	1	1	1	60	2R	10912066	10912084	GTGTGGTAACACCATTCGA		59	10912024	10912044	TACTTATCATAGCTCTCCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ih	FBgn0028428	FBtr0100372	1	1	4	86	2R	10179876	10181606	AGGAGGTCTATATTCTGCAG		57	10181655	10181673	TTGTCAAGCCATCTTTGTC		58	NA	
Drosophila melanogaster	50	Mdr50	FBgn0010241	FBtr0087537	2	1	1	80	2R	10138577	10138660	GCTGTTGAGATTTCCAAGAG		58	10138702	10138721	ATAGGCAAAGAACATCAGGG		59	NA	
Drosophila melanogaster	50	CG13350	FBgn0033890	FBtr0087606	3	1	1	64	2R	9869156	9869174	GTGCTAACCATACCAGGAC		59	9869110	9869129	TAAACAACCATTAGGCTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6329	FBgn0033872	FBtr0087634,FBtr0087633,FBtr0087635,FBtr0087636	1	4	4	140	2R	9717361	9718064	TGCATACAAGTGACCACTG		59	9718168	9718186	TTTGTCCTTCAGATGCTCC		59	NA	
Drosophila melanogaster	50	CG33156	FBgn0053156	FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681	3	5	5	83	2R	9436514	9436532	TTATGGTGACTCCCATCTG		58	9436390	9436470	ATACTGATATCTTCAGCTCCAC		59	NA	
Drosophila melanogaster	50	PR2	FBgn0013955	FBtr0087777,FBtr0087776	1	2	2	85	2R	9036510	9036531	GTGAAACCTATTTCTGTGAAGG		59	9036384	9036464	TCAATCATCGACCTAGCAC		59	NA	
Drosophila melanogaster	50	Iswi	FBgn0011604	FBtr0087842,FBtr0087841,FBtr0087843	3	3	3	93	2R	8527487	8527566	GGCTATAAGAGCTTCTCCG		59	8527623	8527641	GGTAATCAACGTGTTGCAG		59	NA	
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835	2	6	8	109	2R	8504609	8504628	CTGCATATTTACCCACTGAG		58	8504697	8505312	GACGTCTACCATTCTAAATCTG		58	NA	
Drosophila melanogaster	50	Cpr49Ac	FBgn0033725	FBtr0087917,FBtr0087916	2	2	2	88	2R	8276584	8276771	GATCACTCTTACCTGACTGAG		59	8276821	8276839	TAGAATCCCTTGGCATGTG		59	NA	
Drosophila melanogaster	50	prp8	FBgn0033688	FBtr0088016	3	1	1	82	2R	8047812	8047887	GATTCGGAAATGCTTTCCA		58	8047748	8047767	TAGCCGATACTGAACATGAG		58	NA	
Drosophila melanogaster	50	wal	FBgn0010516	FBtr0088082,FBtr0088083	3	2	2	122	2R	7578026	7578044	GGTACTCAATCCGATCACC		59	7577365	7577383	CCATCCACCTTGGAAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9005	FBgn0033638	FBtr0088089	2	1	1	85	2R	7508911	7509129	CTTATTTGTGCGAGATTCGT		58	7508845	7508864	TATGGGATTCAGTAGTGTGG		58	NA	
Drosophila melanogaster	50	CG34223	FBgn0085252	FBtr0112416	2	1	1	72	2R	7123572	7123591	GTCTTTAGTCGTCTTCAACC		58	7123626	7123644	TGGTGGTAGTTATACCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7220	FBgn0033544	FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217	1	5	5	109	2R	6624696	6624714	CATGTTGAGTAGTTGTCGC		58	6624787	6624870	CAGAATCATCGTGGTACCA		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089348	1	1	26	104	2R	6403408	6403426	CATAAATCCGGATGGACGT		59	6403146	6403342	TGTCCACCACATTCATATCTG		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	2	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421092	TAGTAAGGTAGCAAAGTAGGG		58	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	1	26	26	80	2R	6421013	6421095	AGTCCCTACTTTGCTACCT		59	6420951	6420970	CTCTTGGTACTTGACATCCT		58	NA	
Drosophila melanogaster	50	CG2264	FBgn0033478	FBtr0088400,FBtr0088399,FBtr0088401,FBtr0088402	1	4	5	152	2R	5948857	5949128	GAGTTTCACAACCGTAGTG		58	5949244	5949262	GTGTGGATTAACTCCAGTG		57	NA	
Drosophila melanogaster	50	Orc6	FBgn0023180	FBtr0088482	3	1	1	60	2R	5733155	5733174	GACTACGAAATATGGAAGGC		58	5733114	5733135	CTAATTCCTTCAATTTGGCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30001	FBgn0050001	FBtr0088492	3	1	1	80	2R	5709901	5709921	GTGGACCTGATCATATTCCTG		59	5709778	5709859	AGATTCAGCATCGTAAGCC		59	NA	
Drosophila melanogaster	50	Pkn	FBgn0020621	FBtr0088602,FBtr0088601	1	2	6	80	2R	5155477	5171346	ATTCGTATTATCAGGGCGA		58	5155415	5155433	GCAGATTCTCTGTGAAACC		58	NA	
Drosophila melanogaster	50	hig	FBgn0010114	FBtr0088608,FBtr0100119,FBtr0088606,FBtr0088607	3	4	4	153	2R	5122075	5122093	AGTACGGAAATCAGTCGAG		58	5120228	5121958	TCGTAGATACCCTTGTCCT		58	NA	
Drosophila melanogaster	50	CG8026	FBgn0033391	FBtr0088611,FBtr0088610	2	2	2	87	2R	5076504	5076583	GTACTTCATGTTCTACAACACC		59	5076438	5076456	TGCAAGCATGTTCATTGTG		59	NA	
Drosophila melanogaster	50	Rya-r44F	FBgn0011286	FBtr0088640,FBtr0088638,FBtr0088637,FBtr0088639	3	4	4	81	2R	4772298	4772385	GTTGTTAACGGCACTATTGG		59	4772426	4772447	AGTACTTAAGAATCAGCTCCAC		59	NA	
Drosophila melanogaster	50	Cyp4ad1	FBgn0033292	FBtr0088760	2	1	1	82	2R	4327726	4327864	TATATTTACAGGTCACGATCCC		59	4327665	4327683	TTTGCTGAATCTCCGAGTG		59	NA	
Drosophila melanogaster	50	CG8701	FBgn0033287	FBtr0088740	2	1	1	65	2R	4259247	4259265	CTAGAATCAAGATGCCCGG		59	4259294	4259312	TCTTACGTCTAACGACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111078	2	1	60	85	2R	3246158	3246176	GAGATTTCCCAGGGAATCG		59	3236463	3246111	TCGATGAACTTGTACCATCTG		59	NA	
Drosophila melanogaster	50	CG17665	FBgn0039997	FBtr0111269,FBtr0111268	2	2	2	84	2R	124473	124493	GAGTTTGAGACATACGAACAG		58	124352	124429	GCAATATGTCCTGTATACACC		58	NA	
Drosophila melanogaster	50	CG17018	FBgn0039972	FBtr0085958,FBtr0085957,FBtr0085956	3	3	3	80	2L	22365253	22365274	GTCAGTTATACTCGAGATTCCT		58	22365314	22365385	TGGGACATCCTTTAGAAGTC		58	NA	
Drosophila melanogaster	50	CG8671	FBgn0032938	FBtr0081483	2	1	3	89	2L	21280368	21280386	ACTACTATGTCCGTTTCGG		58	21280439	21281141	GCTGGGATTCATCATTGTG		58	NA	
Drosophila melanogaster	50	CG9257	FBgn0032916	FBtr0081465	1	1	1	60	2L	21103556	21103574	TCAAGGGAGATATCTCCCA		58	21103598	21103616	TTAATCCTCTCAGTCGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spi	FBgn0005672	FBtr0081271,FBtr0081269,FBtr0081268,FBtr0100597	2	4	7	209	2L	19571730	19571749	ATACAGAAACGAGAAGAGCC		59	19569195	19569213	CGTAAACGTTGAGTTAGGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG10132	FBgn0032798	FBtr0081247	2	1	1	84	2L	19524101	19524119	GTGGGTAACTATGAGGCAG		59	19524164	19524249	TGAGAGTGACCTTAAACTTTCC		59	NA	
Drosophila melanogaster	50	dnt	FBgn0024245	FBtr0081224	3	1	1	107	2L	19339845	19339864	CAAATTGTGATGATGGCCTC		59	19339639	19339775	CTGATCGTCAATAACGCAG		58	NA	
Drosophila melanogaster	50	Fas3	FBgn0000636	FBtr0081051	2	1	4	109	2L	18391268	18391287	CAAGGATAATCAGGAGTCGT		58	18391359	18392077	GCCAAACTATAGCCTTTGG		58	NA	
Drosophila melanogaster	50	CG5559	FBgn0032653	FBtr0080987	2	1	1	101	2L	17602612	17602632	AGTCTATAATGAGGCTCTTGC		59	17602695	17603125	TCACTTGATCCCAATAGGC		59	NA	
Drosophila melanogaster	50	CG31806	FBgn0051806	FBtr0080952	3	1	1	82	2L	16985305	16985324	CTTAAACGAAGTCATGCCAG		59	16985369	16985387	CTTCCTCAACCAGGATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cas	FBgn0022213	FBtr0080930	3	1	1	94	2L	16823561	16823651	AAGTACGATTCGTTGGTCTC		59	16823486	16823504	AGAATCTCTGGGTTCTCGA		59	NA	
Drosophila melanogaster	50	VhaSFD	FBgn0027779	FBtr0080941,FBtr0080940,FBtr0080942	1	3	3	120	2L	16724785	16724867	AACTTCCAGGTGCAATACC		59	16724683	16724701	AATCGCTGAGGATATCAGC		59	NA	
Drosophila melanogaster	50	grp	FBgn0011598	FBtr0080886,FBtr0080884,FBtr0080885	3	3	4	113	2L	16692022	16692041	CAGGATAAGCATATCCTCCG		59	16692117	16696595	CACGTCTGGTTCTATTCGA		59	NA	
Drosophila melanogaster	50	cact	FBgn0000250	FBtr0080844,FBtr0080845,FBtr0080847	2	3	4	127	2L	16314551	16314569	CGTGCATCATGAACAAGTC		59	16313442	16314462	ATCGTACATCTTCGTATCGTC		59	NA	
Drosophila melanogaster	50	vig	FBgn0024183	FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720	2	4	4	84	2L	15065452	15066950	TTCCGATAGAACTGGTGTG		58	15065386	15065404	ATCAATAGCCTCCTTGACC		58	NA	
Drosophila melanogaster	50	CG7311	FBgn0028848	FBtr0080530,FBtr0080529	2	2	2	60	2L	13709780	13709799	AAATCTTGTGGACTATGCGA		59	13709821	13709840	CTAACTTCAAGTCCTGTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18507	FBgn0028527	FBtr0080528,FBtr0080527	3	2	2	137	2L	13668242	13668260	CATCAGCATAATGGAGGTG		57	13668697	13668715	AAGTGTGACAATCACATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5458	FBgn0032478	FBtr0080437	1	1	1	60	2L	13183902	13183921	GTATGATGGGAACTACAGGA		58	13183944	13183962	ATCCTTGAACACGTACACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bun	FBgn0010460	FBtr0111003	3	1	6	190	2L	12477159	12498535	GATTTCATCGGTGCATCTG		58	12458096	12458115	ATGTTCGACTTGAGAATGCT		59	NA	
Drosophila melanogaster	50	escl	FBgn0032391	FBtr0100626,FBtr0080286	3	2	2	60	2L	11991112	11991131	ATGAGCACGAAGTTAATTCC		58	11991152	11991172	GTAGTAGTGCTGAACAAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14943	FBgn0032383	FBtr0080323	2	1	1	60	2L	11858884	11858907	GTACTCCTATGTCATAGGTAAGTG		59	11858847	11858865	AGAGGAGCTTTGAATTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16833	FBgn0026147	FBtr0080152,FBtr0080150	3	2	3	87	2L	10990770	10991064	TGGGATAACATACTCTCGGA		59	10991114	10991132	CACGGTTGTAGAAGTACGA		59	NA	
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0100487	3	1	10	177	2L	10831342	10831360	ATGTCACAGGATTATCGGT		58	10825828	10825959	GATGATGTACGCTTTATCGA		57	NA	InUTR
Drosophila melanogaster	50	CG31869	FBgn0051869	FBtr0080189	1	1	1	199	2L	10775281	10775378	CGATTATAAATGCGATTGCG		58	10774739	10774757	TTGGACAATTGTCGTACTG		57	NA	
Drosophila melanogaster	50	CG31716	FBgn0051716	FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012	3	6	6	96	2L	10400665	10400738	GAAGCAGAGTAACAGATGC		58	10400797	10400816	TTTAATATGGGTGCTTGCTG		58	NA	
Drosophila melanogaster	50	hoip	FBgn0015393	FBtr0079846	1	1	1	68	2L	9700000	9700018	ACTGAGGAAGTTAATCCCA		57	9700050	9700068	CAAGTTCATGATCTTGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31708	FBgn0051708	FBtr0079776,FBtr0079777	2	2	2	101	2L	9062471	9062492	CCCGAATTTACTGAATACATCG		59	9060918	9062409	CCAGGCGACCTTATATGAG		59	NA	
Drosophila melanogaster	50	Hnf4	FBgn0004914	FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846	2	4	4	100	2L	8688854	8688935	TCTTCTTCGATCCCAATGC		59	8688772	8688792	CCGATCTGATATGTAGTCCTC		58	NA	
Drosophila melanogaster	50	CG13089	FBgn0032052	FBtr0079682	2	1	1	63	2L	8516291	8516369	ATGTTGGAAATTCATGGCC		58	8516395	8516414	CATAGATAGAGTGACCAGGA		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG7196	FBgn0031944	FBtr0079482,FBtr0079483	2	2	2	60	2L	7765142	7765221	CAGAAATGCCAAGGATATTCG		59	7765243	7765261	CTCACCCATGATGATCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Ntl	FBgn0031934	FBtr0079478,FBtr0079479	1	2	2	113	2L	7712415	7712488	AGGAATTAAGTCGGTTGGC		59	7712565	7712583	TTTATGCCTTTCCAGGCTC		59	NA	
Drosophila melanogaster	50	Gr28b	FBgn0045495	FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458	1	5	5	117	2L	7455130	7455212	TTGTATTTCACGATCAGCG		58	7455031	7455049	TATTGAAGGTCTCACAGCA		58	NA	
Drosophila melanogaster	50	santa-maria	FBgn0025697	FBtr0079464,FBtr0079465	1	2	2	153	2L	7446346	7446427	CTGTAGATAATGGCACCCAG		59	7446212	7446230	TCTGGGTAGTAAGGATCGG		59	NA	
Drosophila melanogaster	50	CG13775	FBgn0031874	FBtr0079363	2	1	1	84	2L	6955193	6955268	GTCTCATCTGTGACTATATGCA		59	6955130	6955148	TGATGTCGCTAGTGATGTG		59	NA	
Drosophila melanogaster	50	CG10354	FBgn0031868	FBtr0079345	2	1	1	60	2L	6910103	6910121	TCAACTTACTGGAGAGGAG		57	6910143	6910163	GCTGATGTACAGGTAATTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11221	FBgn0031855	FBtr0079303	2	1	1	63	2L	6754175	6754193	GATCCATCTCATTCCGGAC		59	6754219	6754238	CTCTATGTTGTACTGGTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tkv	FBgn0003716	FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086	2	4	4	228	2L	5221390	5221470	TTCTCATGTGCAAGGTAGC		59	5221180	5221198	AAACATAAGCTAGCCACGA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG2837	FBgn0031646	FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403	3	4	4	165	2L	4904903	4904924	AGTTTACTCCAATATACCACCG		59	4904700	4904721	CTTGTTGAACGATTGATCATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15432	FBgn0031603	FBtr0077438	1	1	1	63	2L	4442734	4442752	CAACAAGCGAATCATGGAC		59	4442779	4442797	CTCGTTGAATTTCTCCACG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Art2	FBgn0031592	FBtr0077476	1	1	1	60	2L	4278802	4278822	GGATATTATAGTGTGCGACTG		58	4278636	4278654	CGACTCGAGCATATTTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	sob	FBgn0004892	FBtr0077558	3	1	1	70	2L	3579696	3579714	GCAGCTCTTAATCTCCAGG		59	3579644	3579662	AATACATCCGATTTCCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9641	FBgn0031483	FBtr0077677	3	1	2	131	2L	2975183	2975202	TAATGAAGACACATGCTCCT		58	2975000	2975018	ATACTGCTGTCCTTGTTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	p16-ARC	FBgn0031437	FBtr0077694	2	1	1	101	2L	2580478	2580496	ATGAGAGCGAGATTACGAC		58	2580561	2580579	TCACATTCTGGTTCTTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4272	FBgn0028485	FBtr0077763,FBtr0077762	2	2	2	60	2L	2368169	2368189	TCGTACGGAGAACTATATCAG		58	2368209	2368331	CCGTATAGGAAGTGATCTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31665	FBgn0051665	FBtr0089787,FBtr0089786	3	2	2	123	2L	1851262	1851698	ACCTGCTAATTGTGGTGTC		59	1851785	1851803	GAGTTGGAGTAGCACACTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG11562	FBgn0031247	FBtr0078130	1	1	1	66	2L	292936	292954	TTTCAGAGGTGTTCCTCAG		58	292984	293002	TCAAGCTATGTCAGTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spen	FBgn0016977	FBtr0078122	2	1	3	81	2L	199974	200131	CATAACACCGAATGATTCTACG		59	200173	200191	ACCTCGCATTAAATGATGC		58	NA	
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437	1	6	10	94	2L	110793	110811	GAGATCACGTCTAAGGCTG		59	110869	111916	AAATCGAAACCCTTGGAGG		59	NA	
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437	3	6	10	141	2L	110859	110877	TATGATGACTCCTCCAAGG		57	112011	112699	ACATGATACCCTGATCTCC		57	NA	
Drosophila melanogaster	50	roX1	FBgn0019661	FBtr0070635	2	1	2	60	X	3756078	3756096	TCGATCATCAGTCTTTGGC		59	3755966	3756056	CACTCTAGCTAATTTCACGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41353	FBgn0083995	FBtr0111193	2	1	1	109	X	22366212	22367397	GAACGATTCGGCTTATGAC		58	22381921	22381940	CCAATGTAATATCTCCTCGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Sdic1	FBgn0067861	FBtr0089604	3	1	1	115	X	20072386	20072404	TAAGCGTCTACAATGTGCA		59	20070434	20072307	ATCAAATGCAAGCACATCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12204	FBgn0031022	FBtr0074783	1	1	1	76	X	19388100	19388118	TCCTTTGATGATCTGCAGG		59	19388042	19388060	TTGGTGTGCTTTAGAACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	inx5	FBgn0030989	FBtr0074698	3	1	1	66	X	19063544	19063855	TTTCCTCATCAGTGTGGTG		59	19063496	19063514	ATACTTCGACCAGAATCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9911	FBgn0030734	FBtr0074243,FBtr0074241,FBtr0074242,FBtr0074244	1	4	4	80	X	16188807	16188825	AAATCTGAAGGAAGACTGC		57	16188675	16188763	ATGATAGGTGTACCTGGTG		58	NA	
Drosophila melanogaster	50	CG17209	FBgn0030687	FBtr0112987	3	1	1	107	X	15662007	15662093	AATTGGATGTTCGGAACCA		59	15662164	15662182	TAGTGAGGCACTCAATCTG		58	NA	
Drosophila melanogaster	50	CG12239	FBgn0029810	FBtr0070814	2	1	1	145	X	5688046	5688065	TACTTCTTGACTCCCAAGTG		58	5688173	5688252	CTCATTCAGTGCATGACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mnt	FBgn0023215	FBtr0070579,FBtr0070578	3	2	3	85	X	3593046	3593151	TTCCAATAGTAATGGAGCGG		59	3593199	3593217	GGTCATAGCACTCCTTCAG		59	NA	
Drosophila melanogaster	50	CG40955	FBgn0085544	FBtr0113957	1	1	1	249	U	9989962	9989980	GAGTCATCGATCCATCAGC		59	9989668	9989749	ACAGTGTTACCTTTCTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11093	FBgn0039932	FBtr0089228	3	1	1	141	4	985526	985544	ATACCAATGAAGTCGACGG		59	985308	985422	CTACAAAGTTCTGTTGCAGC		59	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-3186	FBgn0086662	FBtr0091697	1	1	1	61	3R	1423823	1423841	ACACTTGTTCAACTTGCAG		58	1423780	1423800	CAAGAGTCAGTATACCAAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1340	FBgn0039797	FBtr0085699	1	1	1	126	3R	26552753	26552771	TTGCTGTAGGTGGAAATGG		59	26552859	26552939	GATCGGTTAAAGTTGTAGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kul	FBgn0039688	FBtr0085460	1	1	1	73	3R	25555259	25555339	CAACTTTGGATCACCACAC		58	25555373	25555394	GGGCAAACATAATGAAGTTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sirt7	FBgn0039631	FBtr0085364	2	1	1	123	3R	24882026	24882265	GAAGGGTCTCGATGATACTG		59	24882351	24882369	TATATCTCTACCCGCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr98d	FBgn0046885	FBtr0085188	3	1	1	88	3R	23372935	23372954	GCAAATGGAGCATTTAAAGC		58	23373004	23373080	ATAAGGTGACTACCATCCCT		59	NA	
Drosophila melanogaster	50	CG5886	FBgn0039379	FBtr0084907	3	1	1	177	3R	21677876	21677895	AAGTCCGTAAAGAACGAGAG		59	21678034	21678160	GCAGCTTTAACTTCTTGGTC		59	NA	
Drosophila melanogaster	50	CG31093	FBgn0051093	FBtr0084917	1	1	1	99	3R	21616049	21616135	TTCGCTATAGTGATCGAGG		58	21615968	21615986	GAGATAACGGTCGATTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100632,FBtr0100623,FBtr0100629,FBtr0100624,FBtr0100633,FBtr0084683,FBtr0100638,FBtr0100635,FBtr0084685,FBtr0084684,FBtr0100627,FBtr0100631,FBtr0100636,FBtr0100634,FBtr0100622,FBtr0100625,FBtr0100637	1	17	17	80	3R	20501030	20501365	TTATACATCTGCTGGAGAACTC		59	20501404	20501424	AATAGACACAGGTCCAATACG		59	NA	
Drosophila melanogaster	50	VAChT	FBgn0015323	FBtr0083671	1	1	1	60	3R	14538634	14538653	CTCGTGATTGTATCGATAGC		58	14538673	14538694	TCGGTACTATCACCATATACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7709	FBgn0038642	FBtr0083687	1	1	1	163	3R	14518346	14518364	GGTGGCTTTGTCTTTAGGT		59	14516621	14516639	TTGATGAGCTTCGAATGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12784	FBgn0038356	FBtr0083169	2	1	1	60	3R	11588990	11589009	CTGATAGTGATCAGCTTTGC		58	11589032	11589050	GTATGGCCAGAGATACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18519	FBgn0038348	FBtr0083152	2	1	2	89	3R	11365785	11365869	AACTAGAAGGTCTCATTCAGTG		59	11365717	11365735	TTACAAACGCACAATGGAC		58	NA	
Drosophila melanogaster	50	CG14872	FBgn0038346	FBtr0083156	2	1	2	92	3R	11334994	11335012	TAGCTCCCTGATCTATTGG		57	11334271	11334938	CAGTAACCGGAGAGTAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tefu	FBgn0045035	FBtr0110874	2	1	1	80	3R	11064032	11064050	GCGTGATCTTATCAGACCA		59	11063916	11063989	TAGGGAAACTTGGAAATGGG		59	NA	
Drosophila melanogaster	50	CG3987	FBgn0038292	FBtr0083026	1	1	1	105	3R	10965776	10966069	ATTCAATGCTGAAACTGGG		58	10966136	10966156	GGAGTATGTACCACTATTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5999	FBgn0038083	FBtr0082659	3	1	1	70	3R	8568757	8568775	CTATATGCAAAGCCTCGGT		59	8568649	8568726	CCTTGTACCAATTTCGATTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Men	FBgn0002719	FBtr0082660,FBtr0082661	3	2	2	179	3R	8539998	8540016	CTCTTGGTATTGCCAACCT		59	8539781	8539799	AAGTATCGATGGGTTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6753	FBgn0038070	FBtr0082669	3	1	1	62	3R	8467005	8467280	CTATGCCTCATCGGATGTG		59	8466961	8466979	CAAAGGAGGTAGGCTAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11722	FBgn0037777	FBtr0082205	2	1	1	81	3R	5870899	5870920	CAAGCTCAATATGAAAGACTCC		59	5870773	5870858	TCGCTTGATAAATCGATCCT		58	NA	
Drosophila melanogaster	50	Pnn	FBgn0037737	FBtr0113210	1	1	2	66	3R	5567628	5567646	ACGATACTGCAATAGACGA		58	5567675	5567925	AAAGACTTATCCAACTGCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Taf1	FBgn0010355	FBtr0081686,FBtr0081685,FBtr0081684	3	3	3	104	3R	2475727	2475745	AATATACACCGTGGGTCAG		58	2475813	2475888	CGGTAAATAAACACCTGCA		58	NA	
Drosophila melanogaster	50	plx	FBgn0004879	FBtr0078718,FBtr0078719	1	2	2	80	3R	1536521	1536539	ACCATCACCTAGAAATGCT		58	1536583	1536668	TCGAAGATTGAGCAAACTG		58	NA	
Drosophila melanogaster	50	Dip2	FBgn0040466	FBtr0078893	1	1	1	60	3R	470787	470909	ACTACAATTGACGCAGTCC		59	470745	470763	CAATGGAAGATTCCTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40400	FBgn0058400	FBtr0111160	3	1	1	60	3L	24524239	24524640	TGCTTATACCCGTTCACAG		59	24524197	24524216	AGTTAGTCCATTTCGATCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32450	FBgn0052450	FBtr0078501	2	1	1	66	3L	22323201	22323219	GTTCCCTTAATTCTGGCCT		59	22323249	22323326	CCACTGTATGCATACTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12983	FBgn0037040	FBtr0114618,FBtr0078332	3	2	4	119	3L	20956877	20956895	AGGTGGTTATCGTGAAGAC		58	20956707	20956794	TGATCTCATCGTGGTTCTG		59	NA	
Drosophila melanogaster	50	CG7017	FBgn0036951	FBtr0074856	1	1	1	72	3L	20204842	20205131	GAATAGAGCTAGCGGTGTC		59	20204788	20204806	TTCAAAGTCCTCGATCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	noe	FBgn0026197	FBtr0110844,FBtr0110845	1	2	2	194	3L	17393782	17393800	ACATCTAGTAACACGACGC		59	17393606	17393624	GCCTTAAACGTCTCTATGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG33060	FBgn0053060	FBtr0075374	1	1	1	96	3L	16324145	16324163	AATCAGCTTAGAATCGCCC		59	16324223	16324561	AGTCTTATTCGGACTGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	comm3	FBgn0053209	FBtr0075589	2	1	1	95	3L	15625073	15625092	GATTGGAGTCATCCTTACAC		57	15607122	15625015	TATGAGTTCTTCCACTGCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10743	FBgn0036376	FBtr0075814,FBtr0075813	3	2	2	100	3L	13507884	13507963	CTATGAGGACAATTGCCGA		59	13508025	13508045	GCATCTTTAGGTTTAGCTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	SRm160	FBgn0036340	FBtr0075883	3	1	1	253	3L	13031739	13031757	TATTCTCGCTCTCCAAGAC		58	13032044	13032062	TTATAGCGATTCTGTTGCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG10646	FBgn0036292	FBtr0075972	1	1	1	60	3L	12496790	12496811	CAATCAGGTTCACTTAATCCAG		59	12496700	12496769	AAAGACCTTTGATTGCACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32100	FBgn0052100	FBtr0076006	2	1	1	159	3L	12260743	12260868	TGGATGAGGTCAAAGACAC		59	12260991	12261009	TTCGAGTTCTCCATTTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14135	FBgn0036193	FBtr0076111	1	1	1	259	3L	11685459	11685540	TATGCTCCTTAAAGCGTGAG		59	11686317	11686335	ATTCTTCAGAGATCCAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4623	FBgn0035587	FBtr0077167	1	1	1	231	3L	5135527	5136193	AGTTCTTATGGTCTTCTACGAG		59	5136443	5136461	GAATTCCTTGGAGTTGTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7447	FBgn0035539	FBtr0073291,FBtr0073292	2	2	2	102	3L	4402064	4402082	ACGTCATCGATCACAAGAC		59	4402147	4402234	GAGCAAATAGGTTTCATGCA		58	NA	
Drosophila melanogaster	50	CG12079	FBgn0035404	FBtr0073113	1	1	1	221	3L	3159215	3159291	CTAAGAAGGCGGATAAGCC		59	3159012	3159030	CAACCAGGTTGGTAAACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9004	FBgn0035336	FBtr0072890	2	1	1	63	3L	2374623	2374641	AGAGGAAGAACAAAGCGAG		59	2374665	2374739	GTCCTCTTTAATCTTAGGTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13810	FBgn0035313	FBtr0072870	3	1	1	230	3L	2186149	2186167	TTCTCCTTGGGTTACTACG		58	2186360	2186506	ATAACTAACAGCCAGCTGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32313	FBgn0052313	FBtr0072830	3	1	1	111	3L	1545555	1545573	CTTAATCCTGGAGGCTCAC		59	1545394	1545481	CCTGACTATTTCATCTGCGT		59	NA	
Drosophila melanogaster	50	gol	FBgn0004919	FBtr0072460,FBtr0072459	3	2	2	138	2R	20963227	20964697	GAACATCAGTGCTGTTTGTG		59	20963052	20963070	GTAACAGAGCAGAGATTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nplp1	FBgn0035092	FBtr0072443	3	1	2	83	2R	20925036	20926574	CAGAGAAGCGATTCCTAGG		59	20926620	20926639	GAAACACTGCTTACAAACGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	RpL19	FBgn0002607	FBtr0072406,FBtr0072405	2	2	2	131	2R	20856732	20856995	TGAGTTCTCTAAAGCTCCAG		58	20856554	20856572	TAAGCTTGCGAATGTTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12848	FBgn0040666	FBtr0072437	3	1	1	75	2R	20650232	20650250	CATGGACCGTAAGTTTGAG		58	20650175	20650193	CTTGTAGTTCAGGTTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10339	FBgn0034972	FBtr0072288	1	1	1	85	2R	19967654	19967672	ATCATACAGTCCGACTCGA		59	19967256	19967605	CCATCAGGTACAAAGACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13511	FBgn0034759	FBtr0071863	3	1	1	222	2R	18547262	18547280	GAAATGGTGACCGTAACCA		59	18547465	18547542	AGCAGCAGATATACAAGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tbp	FBgn0003687	FBtr0071679	1	1	1	183	2R	17574322	17574340	CAATCCTAAGCGATTTGCG		59	17574093	17574175	AAAGTCGAGGAACTTTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16926	FBgn0040732	FBtr0086499	2	1	1	221	2R	15388351	15388439	TAAGTGTTGTTAAGATGGCC		57	15388073	15388092	AATAGCGATTGTACAATCCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15096	FBgn0034394	FBtr0086633,FBtr0086632	3	2	2	113	2R	14697627	14697645	CTATTCTTTGCCCTTACGG		57	14697466	14697550	CGACCAATTATACTCGGGA		58	NA	
Drosophila melanogaster	50	CG9000	FBgn0034176	FBtr0087059	2	1	1	62	2R	12889303	12889321	TCGTAGTCATCGAGAATGC		59	12889108	12889277	TTTGGTACACTTTCACCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6262	FBgn0034121	FBtr0087154,FBtr0100615,FBtr0087152	3	3	5	116	2R	12247645	12247751	CAAATGTTTGTCGAGAAGC		57	12247831	12247849	CTTTATTTCCGGGTCAGAG		57	NA	
Drosophila melanogaster	50	mRpL34	FBgn0083983	FBtr0111011	2	1	1	153	2R	11986504	11986585	CAAGGAATGCTCCAAAGGA		59	11986699	11986720	CGTGGACATTAATTCTCTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33462	FBgn0053462	FBtr0087284	1	1	1	93	2R	11584621	11584715	CTTGCTAATAACCGTTCGC		59	11584772	11584790	ATTGTACTCCTGGAAGGGT		59	NA	
Drosophila melanogaster	50	Cyp6a19	FBgn0033979	FBtr0087453	1	1	1	60	2R	10766342	10766361	GGAATACGATTCTATGCAGG		57	10766381	10766456	CCTTAGCGATTCATTGATAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cg	FBgn0000289	FBtr0087526,FBtr0112795,FBtr0112794,FBtr0112796,FBtr0087528,FBtr0087527,FBtr0087529	2	7	7	85	2R	10066088	10066174	ATTATGCACTCTCGCTTCC		59	10066223	10066241	ACCAATTGAAACTTGCGTG		59	NA	
Drosophila melanogaster	50	Amph	FBgn0027356	FBtr0087828	2	1	1	98	2R	8495131	8495153	CCTTGTATGACTCTAGGATACTG		59	8495211	8495430	CCGAGTAAATCTTAGCCGT		59	NA	
Drosophila melanogaster	50	CG13167	FBgn0033706	FBtr0088000	3	1	1	84	2R	8145381	8145474	TGTGGTAATACCCATCCTG		58	8145522	8145540	CAGGCGATAGAAATCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp47F	FBgn0033629	FBtr0088152	1	1	2	236	2R	7265746	7266039	TAACGACATGCGAATCTCC		59	7265469	7265487	TCCACAATGAAGATGACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Or46a	FBgn0026388	FBtr0088331	1	1	2	60	2R	6029371	6029389	CTCCTGAGCACCTTTAACC		59	6029413	6029492	TGACGATAGAACCAAAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8235	FBgn0033351	FBtr0088676	2	1	1	120	2R	4815544	4815562	AATTACGGCCAGAATTGCT		59	4815386	4815460	AAATCTCGGCTTCAATGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11669	FBgn0033296	FBtr0088757	3	1	1	60	2R	4357616	4357635	ACGGATCCACTAAATATGGA		57	4357351	4357593	GAGATGTAACGCTTCACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lcp1	FBgn0002531	FBtr0088763	2	1	1	255	2R	4318618	4318700	AAGTTTGTCATGATCTGCG		58	4318381	4318399	CGACGTACTTAACCTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30382	FBgn0050382	FBtr0088894	3	1	1	250	2R	3718957	3719037	CTCTACCAAGTGGAGTACG		58	3718437	3718455	TACTTGTAGCGGAAGTTGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Eb1	FBgn0027066	FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130	1	5	5	84	2R	2642342	2642416	CAAATCAGGTGATGGATATGC		59	2642460	2642480	TCAATATCCCGCAACTTAGAG		59	NA	
Drosophila melanogaster	50	Ogt	FBgn0040295	FBtr0086085,FBtr0086084,FBtr0086086	2	3	3	80	2R	1208108	1213317	GAATATTTGATAGAGCTGTGGC		59	1213356	1213376	CCAAATTGCCATGAACTACAG		59	NA	
Drosophila melanogaster	50	CG40127	FBgn0058127	FBtr0111266	3	1	1	97	2R	75327	75346	CCTCATTGAGGACTTACCTC		59	75182	75267	AGCAGTTGTAGGCATTCTG		59	NA	
Drosophila melanogaster	50	CG14401	FBgn0032900	FBtr0081430	3	1	1	187	2L	20870745	20870834	AAGTACCATGAGGGAATGC		59	20870984	20871003	GGTAGTGTGGATAATCCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15270	FBgn0028879	FBtr0080703,FBtr0080702	1	2	2	81	2L	15091215	15091301	GAGAAACTTAAAGAGCAACTGG		59	15091343	15091361	AATAGGGAATCGCAGACTC		58	NA	
Drosophila melanogaster	50	CG4103	FBgn0028925	FBtr0080727	2	1	1	68	2L	15009376	15009450	GCTCTCAATGTGATGAATGC		59	15009327	15009345	GTAGGCGAGGACAATATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or33b	FBgn0026391	FBtr0080279	2	1	1	208	2L	11936908	11937108	AAATAGTGGAATTACTGCGC		58	11937279	11937297	CATCTCCACGGATATCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scat	FBgn0011232	FBtr0079809	3	1	1	131	2L	9431784	9431803	GTATCAGAAAGCTATCGACG		57	9431897	9432294	GATTTCGCAGGTGATTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scat	FBgn0011232	FBtr0079809	1	1	1	129	2L	9431786	9431804	ATCAGAAAGCTATCGACGG		59	9431897	9432294	GATTTCGCAGGTGATTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fbp2	FBgn0000640	FBtr0079808	2	1	1	67	2L	9427244	9427322	ATGGGCATGAATCTGACTG		59	9427353	9427371	TGTGTCTTGTCCATGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9463	FBgn0032066	FBtr0079744	2	1	1	120	2L	8767714	8767733	AATTTGGCTGGCTATTATCG		58	8767556	8767634	GCTCATTGACATACTTGATCAG		59	NA	
Drosophila melanogaster	50	CG15630	FBgn0031627	FBtr0077418	2	1	1	60	2L	4738299	4738317	AAAGGCGAAATTATACGCG		58	4737711	4738275	GTTCTGTCGATGTTTGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17258	FBgn0031496	FBtr0077668	1	1	1	211	2L	3033073	3033091	TCCTTAAAGAGAAGCGTCG		59	3032820	3032898	GTTCTTTGTGATCAACCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3165	FBgn0031484	FBtr0077642	3	1	1	76	2L	2977471	2977490	AATTGAATGTGCTCTTCCAG		58	2977529	2977603	CAAGTAGTTGCTCAGACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3557	FBgn0031423	FBtr0077790	1	1	1	102	2L	2385444	2385517	GTCGAATGAAGGATCAGCT		59	2385360	2385378	TGAAGATGGATAAGCCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lectin-22C	FBgn0040105	FBtr0077859	1	1	1	67	2L	2036509	2036527	ATGTACGATTACCCATGCC		59	2036043	2036481	GAATTTAAATCTTCCTCCTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11490	FBgn0031233	FBtr0078125	3	1	1	78	2L	208569	208587	ATAGTTAACAACTTGCCCG		57	208749	208767	TCTGAAACTCTAGCCACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	mt:tRNA:F	FBgn0013693	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG17450	FBgn0040028	FBtr0070056,FBtr0070057	2	2	2	60	X	21478064	21478082	AACAACTTGAGGAACTCCC		59	21478022	21478040	CCTGCTTCGAGATCTTCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	1	7	7	80	X	16273085	16273103	TTTGGTTATGCATGAGCAC		58	16273145	16273233	CAGAAGGCACATTTGTTATCC		59	NA	
Drosophila melanogaster	50	CG32626	FBgn0052626	FBtr0073830,FBtr0073833,FBtr0073832,FBtr0073831	2	4	4	80	X	13726180	13726259	GATCATAAAGGAAGTGGCCT		59	13726119	13726138	GACTTGCCATAGATGGAGAG		59	NA	
Drosophila melanogaster	50	CG32627	FBgn0052627	FBtr0073814,FBtr0073815,FBtr0113441,FBtr0073813	3	4	4	131	X	13606925	13607018	CAAAGCCATGATTAGAAGACTG		59	13607110	13607128	GTTAACTTCTTCTCCGGGT		58	NA	
Drosophila melanogaster	50	sdk	FBgn0021764	FBtr0070131	3	1	4	93	X	640088	640106	ATAAATGGTCCTTCTGGGC		59	640325	640558	GTGAGTCGTAAACAAATGACG		59	NA	InUTR
Drosophila melanogaster	50	elav	FBgn0000570	FBtr0114366,FBtr0070091,FBtr0100254	3	3	3	61	X	412376	412394	ATTCGATTCGATAAGCGGG		59	412333	412351	GGTGTAGTACCGTTCAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2053	FBgn0039887	FBtr0085873	2	1	1	60	3R	27864627	27864648	TCTACTGAAATCAGATCATCCG		59	27864669	27864687	TGGAATTAATTCAGTGCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycG	FBgn0039858	FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799	3	5	5	97	3R	27426466	27426484	ACTTCCACATCAAGGAGTC		58	27426317	27426407	ATCAGGAATCCTCATGTACTG		58	NA	
Drosophila melanogaster	50	Axn	FBgn0026597	FBtr0085554,FBtr0085553,FBtr0085555	1	3	3	93	3R	25858742	25858817	CCTTTCAGGTGATACCTCG		59	25858874	25858892	AACTTGGGTATCAGCAAGG		59	NA	
Drosophila melanogaster	50	CG10011	FBgn0039590	FBtr0085319	1	1	1	60	3R	24435946	24435964	CATCTCTAGTCAGTCCACG		58	24435841	24435859	TTGCTGTGTAAAGGTAAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	veli	FBgn0039269	FBtr0084787,FBtr0084788	3	2	2	114	3R	20890641	20890659	GAATAATACCTGGAGGCGT		58	20890475	20890493	TTTAATAGCTCTACGGCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG33111	FBgn0053111	FBtr0084529,FBtr0084530,FBtr0100312	2	3	3	120	3R	19633221	19633305	AAATTCACAATCTCACCAGC		58	19633120	19633138	ATCTTGAAGAGCTTTCGCT		59	NA	
Drosophila melanogaster	50	DNaseII	FBgn0000477	FBtr0083538	2	1	1	60	3R	13845862	13845881	TTGAAGTACCTGTACGTGAC		59	13845904	13845922	TGAACTTTCCCGACATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rin	FBgn0015778	FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082800,FBtr0082796	3	5	5	67	3R	9476734	9476752	ATTACCTACGACGATCCTG		58	9476897	9476915	TTCTCCGGGAAGTATAGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	yellow-e3	FBgn0038150	FBtr0082759	3	1	1	69	3R	9229738	9229756	TTTACAGTGAGCCTCAGTC		58	9229622	9229640	TAAAGGAGTTCAGCGTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	plx	FBgn0004879	FBtr0078718,FBtr0078719	2	2	2	74	3R	1536521	1536539	ACCATCACCTAGAAATGCT		58	1536577	1536662	ATTGAGCAAACTGCAACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32452	FBgn0052452	FBtr0078524,FBtr0078523	1	2	2	60	3L	22711289	22711310	ATATGTTGGATATGAGGCAGAG		59	22711330	22711349	TTATCCATAATCTCGCCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hr78	FBgn0015239	FBtr0078392,FBtr0078390,FBtr0078389	1	3	4	91	3L	21488964	21489534	CATGCGAAGTGATTCTGTG		59	21488891	21488909	CAGAAGTGGATGAGCTACC		59	NA	
Drosophila melanogaster	50	CG5130	FBgn0037000	FBtr0078220,FBtr0078221	1	2	2	80	3L	20478514	20478599	TTATCCCTACATGAAGGAATCC		59	20478455	20478473	GTTCGCTCAAAGATCTCCA		59	NA	
Drosophila melanogaster	50	CG8798	FBgn0036892	FBtr0074967,FBtr0074968	1	2	2	80	3L	19603760	19603779	ATTTAGGAGCATCCCTTTCC		59	19603641	19603719	GTAGACGTTCTGGGATATCTG		59	NA	
Drosophila melanogaster	50	Tollo	FBgn0029114	FBtr0075607	3	1	1	60	3L	15231048	15231069	GCTAGCTCTATACCAAATAGTG		57	15231089	15231108	TCTTGGAGATCTGGTTATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wls	FBgn0036141	FBtr0076219,FBtr0076218	1	2	2	60	3L	11161809	11161828	ATTTGGCTGTTGCTTAAGAC		59	11161768	11161787	AGAACCATATCATGATGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	desert	FBgn0040229	FBtr0076575,FBtr0113320	2	2	2	75	3L	8747583	8752435	CTACCGCAGTTATACACCC		59	8752474	8752551	GGAGGTTCCATACGTTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	ago	FBgn0041171	FBtr0073246,FBtr0073247,FBtr0073245	2	3	3	100	3L	4247723	4247742	AAATTGTGGGACGTTAAGAC		58	4247576	4247660	GTGTCGTTTGCTCTAATCC		58	NA	
Drosophila melanogaster	50	CG32264	FBgn0052264	FBtr0113431,FBtr0113430,FBtr0073188	3	3	5	138	3L	3718987	3722173	CAATAACTATTCGCTCAACAGG		59	3718870	3718888	GTAGACGATATGGCCATCG		59	NA	
Drosophila melanogaster	50	Patj	FBgn0067864	FBtr0072781,FBtr0072780,FBtr0072779	1	3	3	111	3L	1800627	1800645	AGTAAGGGACTCCCTAGAC		58	1800780	1800798	GTAGTACTTGTGACGGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nplp1	FBgn0035092	FBtr0072443	1	1	2	106	2R	20925012	20925030	TCGACTGGAACGATTATCG		59	20926620	20926638	AAACACTGCTTACAAACGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG6393	FBgn0034685	FBtr0071752,FBtr0071751,FBtr0071750	1	3	4	80	2R	17956169	17956254	GATAATTGAATTCCCAGCAGTG		59	17956295	17956313	AAGGGAAGGATGTACTGGT		59	NA	
Drosophila melanogaster	50	HmgD	FBgn0004362	FBtr0071708,FBtr0071709	2	2	2	164	2R	17603110	17603202	GAAGGACAAGTCTGAGTGG		59	17603330	17603348	TCCTTCTTGCTCTTCTTCG		59	NA	Nonspecific
Drosophila melanogaster	50	Ate1	FBgn0025720	FBtr0086319	3	1	3	97	2R	16144010	16144028	CTCCTACTCAACGAAATCC		57	16143731	16143949	CTAACACGATCTTTAGCCG		57	NA	
Drosophila melanogaster	50	Gint3	FBgn0034372	FBtr0086656,FBtr0086654,FBtr0086655	1	3	3	105	2R	14546145	14546222	ATGACTGCAAACTCATTCC		58	14546058	14546076	AGCATTAGAAGGTCTTCCT		57	NA	
Drosophila melanogaster	50	PR2	FBgn0013955	FBtr0087777,FBtr0087776	3	2	2	87	2R	9036510	9036531	GTGAAACCTATTTCTGTGAAGG		59	9036382	9036463	GATCAATCATCGACCTAGCA		59	NA	
Drosophila melanogaster	50	mXr	FBgn0050361	FBtr0088756,FBtr0088755,FBtr0088754	2	3	3	81	2R	4367409	4367427	GTTATTTGCACGGTCTACG		58	4366969	4367365	ACATGGTGAATCCAATATGC		58	NA	
Drosophila melanogaster	50	gp210	FBgn0033039	FBtr0086044	3	1	1	80	2R	1652592	1652611	AATCTCCTGGAAAGTAAGCC		59	1652651	1653011	CCACTCTGATACTCTATTCCTG		59	NA	
Drosophila melanogaster	50	Spf45	FBgn0086683	FBtr0111239,FBtr0111241,FBtr0111240	2	3	3	60	2L	22960455	22960473	TTGTAGCTAAACAGGGAGG		58	22960413	22960431	ATGGACATTTCTTGGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080905,FBtr0080906	2	2	13	81	2L	16774845	16775217	TGAGATCTTCGAGTACAACG		59	16775258	16775279	GATATGGTTAAAGAACTGCTGC		59	NA	
Drosophila melanogaster	50	Sfmbt	FBgn0032475	FBtr0080492,FBtr0080491	2	2	2	110	2L	13172240	13172323	TCGGATTGGTTCTGTTACC		59	13172148	13172167	GAATGTACGAGAGTCGTAGC		59	NA	
Drosophila melanogaster	50	Vha68-2	FBgn0020367	FBtr0080419,FBtr0080420,FBtr0080418	1	3	3	103	2L	12977895	12977980	TCCATGAAGTTCAAGGACC		59	12978047	12978065	TCCTCCAGATTTCTGAAGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG16833	FBgn0026147	FBtr0080152,FBtr0080150	2	2	3	83	2L	10990774	10991068	ATAACATACTCTCGGAACGC		59	10991114	10991132	CACGGTTGTAGAAGTACGA		59	NA	
Drosophila melanogaster	50	pes	FBgn0031969	FBtr0079553,FBtr0114550,FBtr0079552	1	3	3	86	2L	7988318	7988403	CCGGGTATTACCTTGTATGAG		59	7988252	7988270	AATTTCCTCTGATACGCGT		59	NA	
Drosophila melanogaster	50	stai	FBgn0051641	FBtr0079196,FBtr0079197	1	2	3	178	2L	6122168	6122186	GTGACATGAAGGAGAAGCT		59	6122398	6122706	GATTGTGTTATGCTCCTTTAGG		59	NA	
Drosophila melanogaster	50	eIF-4a	FBgn0001942	FBtr0079178,FBtr0079175,FBtr0079177,FBtr0079176	2	4	4	90	2L	5984935	5985036	ATTCATAGAATTGGTCGCG		57	5985089	5985108	TATCCTTAAGGATTCGTCGA		57	NA	
Drosophila melanogaster	50	Rtnl1	FBgn0053113	FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039	3	7	7	144	2L	4994705	4994794	CCCTTTAAGGATTACCTGGA		58	4994580	4994601	TGATCGAATCGATGATATCCTC		59	NA	
Drosophila melanogaster	50	CG34394	FBgn0085423	FBtr0112638,FBtr0112641,FBtr0112639	3	3	4	105	2L	3363378	3363397	GCGAACTGTATTCCATAGAC		58	3363181	3363310	TGATCATCGACAGTTCTGG		59	NA	
Drosophila melanogaster	50	toc	FBgn0015600	FBtr0110903,FBtr0077665,FBtr0077663,FBtr0077662,FBtr0077664	3	5	6	100	2L	3071761	3080665	TTCATGTCCAAAGAGCTGG		59	3071679	3071699	TGCTGTAGCAGCAATATAGTC		59	NA	
Drosophila melanogaster	50	CG3558	FBgn0025681	FBtr0077645,FBtr0077644	2	2	2	80	2L	2996427	2996512	TAAGCTTAGGTCCCTTTCTC		58	2996555	2996573	AGTGGAGATTGACGTACAG		58	NA	
Drosophila melanogaster	50	robo3	FBgn0041097	FBtr0077921	3	1	1	97	2L	1287037	1287166	ACTTTGGAAGATGTTCCGG		59	1287227	1287245	TTTGGTTGTGGAGGTAACC		59	NA	
Drosophila melanogaster	50	CG41423	FBgn0085644	FBtr0114088	3	1	1	66	U	2928098	2928501	GTCTCAGCAAAGGATCCTC		59	2928531	2928549	CTTTGCCTTGTACTCACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1896	FBgn0039870	FBtr0085837	1	1	1	61	3R	27570648	27570728	TTCTTGAAATTCGCTCCAC		58	27570752	27570771	TATAGAGGAGCCTCTTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6933	FBgn0036952	FBtr0074855,FBtr0074854,FBtr0074853	2	3	3	79	3L	20212743	20213445	GCAATCAATATGAGGATCTGTG		59	20212685	20212703	AGATCATCCATCGTGTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6600	FBgn0035672	FBtr0077046	2	1	1	63	3L	6062986	6063333	ATATTGGTTCTCGAGTACGT		58	6063359	6063377	TAGCGATCGACATATTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PTP-ER	FBgn0016641	FBtr0071686	1	1	1	70	2R	17508772	17508847	AATTACATCAAGGGACCCG		59	17508720	17508738	ATTGTATTGGGCAGTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr43b	FBgn0033202	FBtr0088945	3	1	1	70	2R	3547049	3547068	GTATATGAGGAAGGTCAGGC		59	3546928	3547016	TTATCAACGAGGTGTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876	2	7	7	116	2L	16467746	16468063	AAACTATTCCGAATCCCTGG		59	16467649	16467667	TTCTTGTAGTATGCCGTCG		59	NA	
Drosophila melanogaster	50	rho-6	FBgn0032415	FBtr0080359,FBtr0080360	1	2	2	236	2L	12131047	12131292	GTGCTTTATAGGTATCTGCC		57	12130762	12130780	AACAATATCAGCAGGGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	p16-ARC	FBgn0031437	FBtr0077694	2	1	1	110	2L	2580567	2580647	AACCAGAATGTGAAGGACC		59	2580721	2580739	TATTAGGTCGTTCTGGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34128	FBgn0083964	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR32273	FBgn0052273	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG17167	FBgn0039941	FBtr0113729,FBtr0113728	1	2	2	91	XHet	53879	56997	CATCGATAAGCCTCCAGAG		59	57049	57070	GAAGATTAAGAACAAAGAGGCC		59	NA	
Drosophila melanogaster	50	CG12565	FBgn0031180	FBtr0077214,FBtr0077215	2	2	2	103	X	21313521	21313539	GGATTAGGAACGGGAACTG		59	21312769	21313456	GAAACGGTAAGATCAATGCAG		59	NA	
Drosophila melanogaster	50	CG15446	FBgn0031155	FBtr0077261	2	1	1	64	X	20972436	20972456	CGTTAAGATTAAAGTGGAGGG		58	20972392	20972410	TGACCATCGAATCAGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34332	FBgn0085361	FBtr0112534	2	1	1	218	X	20035133	20035152	TTAGAAATGGCAGACAAGTC		57	20035386	20035406	CATGAGCTGAAATAGGTACAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Ranbp21	FBgn0031051	FBtr0074759	3	1	1	60	X	19545094	19545114	GAGTACACAATCAAGTACCGA		59	19545054	19545075	CCTTAATGTACACCTTCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0084	FBgn0026680	FBtr0074762	3	1	1	125	X	19524175	19524280	TTCAACAAGTCCCGTAAGG		59	19524068	19524087	TATCAAATCCGAAGTGGAGC		59	NA	
Drosophila melanogaster	50	CG14204	FBgn0031032	FBtr0074729	1	1	1	98	X	19479666	19479743	CCTGTGATGTTCAAGAATGG		58	19479804	19479822	CATAGTACCGACCAACCAG		59	NA	
Drosophila melanogaster	50	CG7378	FBgn0030976	FBtr0113004	1	1	2	147	X	18800158	18801540	CTATTATCAGTCGCCCAGC		59	18801651	18801669	ATCACAGTCAACGTCATGG		59	NA	
Drosophila melanogaster	50	CG6891	FBgn0030955	FBtr0074632,FBtr0074631	2	2	2	212	X	18674943	18674961	AGTTCATCTTCCTGACGTG		59	18675210	18675228	CTTAGTTATCCCGGATGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ing3	FBgn0030945	FBtr0074614	3	1	1	101	X	18545398	18545416	AGAAGAAGCTAACCACAGC		59	18545315	18545333	ATTCCAGACTAATCGACGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mnb	FBgn0002777	FBtr0074542,FBtr0074541,FBtr0100616	3	3	3	115	X	17764008	17764027	ATTCACTGTGATTTGAAGCC		58	17763836	17763930	ATGTAGTGGTAGATCCGCT		59	NA	
Drosophila melanogaster	50	CG32554	FBgn0052554	FBtr0074467	1	1	1	68	X	17746235	17746253	TATTTGATCGCCGATTTGG		58	17746185	17746203	CCGTCTCCTTATGTTAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12995	FBgn0030826	FBtr0074401,FBtr0074402	1	2	2	69	X	17103953	17103971	GATGATCCTTCTGGGTCAG		59	17103902	17103920	ATTGGAGGACACATCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4928	FBgn0027556	FBtr0074344,FBtr0074345	2	2	2	85	X	16828463	16828905	CATCTCCAGTTTGGTCCTC		59	16828954	16828972	AGAACTGCAAATCCTCCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4829	FBgn0030796	FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337	3	5	5	93	X	16718722	16718740	CGAGAAGGGATACCATGTG		59	16718794	16718964	CAAATAGATTTGGTACTGCTCG		59	NA	
Drosophila melanogaster	50	CG9132	FBgn0030791	FBtr0074354,FBtr0074353	2	2	2	283	X	16693215	16693233	GATCAACATGCGGATAACG		59	16692662	16692680	ATATCTAGAACTGCACCCA		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13008	FBgn0030780	FBtr0074322	2	1	2	60	X	16606547	16606565	GCTATATGCGCTATGTGGA		59	16606589	16606607	TGATCCTCATCGGAATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9673	FBgn0030775	FBtr0074362	2	1	1	104	X	16597338	16597356	CCACAACTGATGAGGAGAC		59	16597252	16597271	TATAGGATGCAGTACCATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	disco	FBgn0000459	FBtr0100384,FBtr0074250	1	2	2	63	X	16105838	16105856	CTCCTCTCCGAAATGTACC		59	16105793	16105811	GATGGTGGTTGTATTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9172	FBgn0030718	FBtr0074151,FBtr0074152	2	2	2	83	X	15880262	15880280	AAGGTCTACGACCAAATGC		59	15880197	15880215	CGAGTAATGGTAGTAGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	1	9	9	110	X	15788792	15788878	AGTTACCGAATATGGCGAG		59	15788952	15788970	TTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	Gbeta13F	FBgn0001105	FBtr0074109,FBtr0074106,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107	3	6	6	60	X	15755481	15755500	GCTCATTATCCGACTAAGCT		59	15755523	15755614	CTCTTGTTAGATGGTGGCT		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	HDAC6	FBgn0026428	FBtr0074009,FBtr0074010,FBtr0074008	3	3	3	162	X	15230448	15230466	CGAGTACAACGGTTATTGC		58	15230592	15230663	GGAGAAGTAAACCACCCTG		59	NA	
Drosophila melanogaster	50	CG15027	FBgn0030611	FBtr0073965	1	1	1	60	X	14979286	14979304	CCTGAAACTCGACCTAGTC		59	14979244	14979264	TTTCTTAGACTGCTCCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eag	FBgn0000535	FBtr0111009,FBtr0073955	1	2	2	84	X	14880360	14880378	ACTGCAATGAGTCCTTCTG		59	14880426	14884364	ATGAAGCCGCATACATACC		59	NA	
Drosophila melanogaster	50	CG9030	FBgn0030599	FBtr0073971	1	1	1	82	X	14848371	14848389	AACAGGACTATAGGCAACG		59	14847735	14848328	GGTTTAGACATAGAAAGGACAC		58	NA	
Drosophila melanogaster	50	CG12398	FBgn0030596	FBtr0073976	3	1	1	60	X	14806377	14806396	ACTCGTTTGTAATAGCTCCA		58	14806336	14806356	CGTAACTGTAGGTATCCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ag5r	FBgn0015010	FBtr0073937	1	1	1	66	X	14679658	14679676	ATATGTGGTACGATGAGGC		58	14679610	14679628	TTGTAGTTCGACGGATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34346	FBgn0085375	FBtr0112555,FBtr0112554	3	2	2	107	X	13795535	13795553	TAGTTTGTTCAGAGGGCAC		59	13779464	13779482	CAATTAGATGTCCTTCGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	rdgB	FBgn0003218	FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194	2	4	4	83	X	13663021	13663039	TATTATCCGGACAATGGCT		58	13663084	13663187	GTCAATTACGTCTACGATACG		58	NA	
Drosophila melanogaster	50	Tango13	FBgn0086674	FBtr0073803	2	1	2	177	X	13479962	13479980	TTAATCTGGAGGCGATGTC		59	13480121	13483968	CGATTGGCCTTTAACTTCG		59	NA	
Drosophila melanogaster	50	CG1640	FBgn0030478	FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769	1	6	6	82	X	13268114	13268132	ATTCAACCGTTAGACGTCC		59	13268315	13268333	ATGTTATCCAGTGTGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	hep	FBgn0010303	FBtr0073748	2	1	3	85	X	12979685	12979703	AGTAGATGTGCCCAATTGG		59	12978593	12979637	AATTAGGTAACCTCTGGAGC		58	NA	
Drosophila melanogaster	50	CG12716	FBgn0030439	FBtr0073752	3	1	1	119	X	12869515	12869597	GAAACAAGTCCTGAGAATCCT		59	12869416	12869435	TTTGAAATTGAGGCGTTGAG		59	NA	
Drosophila melanogaster	50	CkIalpha	FBgn0015024	FBtr0073680,FBtr0073682,FBtr0073681	3	3	3	83	X	12550117	12550136	TCTGAACTATTGTCGTAGCC		59	12550182	12550381	GTTCTGAACAGTATGCGGA		59	NA	
Drosophila melanogaster	50	CG15730	FBgn0030395	FBtr0073667	3	1	1	60	X	12390169	12390187	TGATAATAGTCGTCCTCCC		57	12390127	12390146	ATTGCAGAGTTCCTTATTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1578	FBgn0030336	FBtr0073607	1	1	1	80	X	11704489	11704576	GATCGATTCGATTATGAGGAG		57	11704429	11704447	GTTCTCGTAATTCCATCGT		57	NA	
Drosophila melanogaster	50	Ptp10D	FBgn0004370	FBtr0073525,FBtr0073524	2	2	3	173	X	11567985	11568087	CATACAAATCCCAGCTCGA		59	11568224	11568242	TTTCCGTCTATGCTGTAGC		59	NA	
Drosophila melanogaster	50	CG1657	FBgn0030286	FBtr0073448	3	1	1	97	X	11227171	11227264	CATCATCAACTGCATCTCG		58	11227325	11227343	CTACGTATATGAGCACGGG		59	NA	
Drosophila melanogaster	50	spri	FBgn0085443	FBtr0112690	3	1	4	60	X	10387116	10387134	GAAACCTAAACGCAAACGA		58	10387074	10387092	TCCAGTCTGTATGTTGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0230	FBgn0028342	FBtr0071438	2	1	1	188	X	10107391	10107409	GGATGAGATGAAGCTGACC		59	10107635	10107653	AAGAACTTGAGGGTCTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	su(r)	FBgn0086450	FBtr0071338,FBtr0071337	1	2	2	230	X	9091234	9091310	ATCGATGATGACATGTGCA		59	9090948	9090967	GGTGTAGAAGATCTTCTCCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG12106	FBgn0030100	FBtr0071306	3	1	1	61	X	9088669	9088687	GACCATCGTTGAGTTTGTC		58	9088711	9088730	CCTTGAGACGATTGATTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0071296,FBtr0112965,FBtr0071294,FBtr0071298,FBtr0071295,FBtr0071297	2	6	6	87	X	9008595	9008676	ACGAGGATGAGTTTGAACG		59	9008727	9008745	CTTGTGGTCGAGACTTGAG		59	NA	
Drosophila melanogaster	50	ND75	FBgn0017566	FBtr0071180,FBtr0071181	2	2	2	172	X	8143115	8143194	GCACTATTAGCAAATCCATCG		59	8142963	8142981	CTAGATAGCCACACTCTGC		59	NA	
Drosophila melanogaster	50	CG2256	FBgn0029995	FBtr0071115	3	1	1	102	X	7978944	7978962	CAAAGTGAATCCCAAGCTG		59	7978780	7978798	ATTTGATACCAGCTTGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	sn	FBgn0003447	FBtr0071101,FBtr0071100,FBtr0071102	3	3	3	84	X	7879377	7879472	GGATCTGCATAAGATCGCA		59	7879520	7879538	GAATCGGTTCCATCATCCA		59	NA	
Drosophila melanogaster	50	sws	FBgn0003656	FBtr0071125	1	1	2	81	X	7854136	7855218	ACACCAATGGATCTCTGTG		59	7854073	7854092	TCTTTAGGATCGCATAACGG		59	NA	
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100214,FBtr0100200,FBtr0100205,FBtr0100201,FBtr0100206,FBtr0100211	3	6	15	233	X	6982728	6982746	GAAAGACACTCACTGACTC		57	6979936	6979954	AATCATTGTAACCACGACG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Spat	FBgn0014031	FBtr0070913	3	1	1	226	X	6424397	6424415	GGTGAACACGATTAAGGTG		58	6424673	6424691	ATAGATCCGTCTTGATCCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	fs(1)M3	FBgn0005390	FBtr0070892	2	1	1	85	X	5856879	5856897	AGTGATCTGATCCGAACTG		58	5856761	5856833	ACACTTAGATCTTCATCTGGAG		59	NA	
Drosophila melanogaster	50	CG4020	FBgn0029821	FBtr0070824	3	1	1	190	X	5801137	5801157	GGTGATCGATATCGGTAAGAC		59	5801364	5801439	GTAGCTTCATCAGGAAGGG		59	NA	
Drosophila melanogaster	50	CG15767	FBgn0029809	FBtr0070813	3	1	1	60	X	5684249	5684267	ATGCCCGATGAATACTTCG		59	5684290	5684309	CAAAGTGCAGAACAATCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3249	FBgn0029764	FBtr0070795,FBtr0070796,FBtr0070794	1	3	3	102	X	5309430	5309448	ACTTACCAAAGGCATTGTC		57	5309066	5309367	GATTACATTATTGGGACCTAGG		57	NA	
Drosophila melanogaster	50	CG15786	FBgn0029749	FBtr0070746	3	1	1	92	X	5196016	5196035	CCAATGGACCTACTATACGG		59	5196090	5196169	CAATTGCGGAATGTCTCTG		59	NA	
Drosophila melanogaster	50	CG32770	FBgn0052770	FBtr0070720	3	1	1	158	X	4798697	4798717	TGTGGTGGAGTTTAAGAAGAC		59	4799016	4799035	TTTACGTAGTCCTTCAGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2982	FBgn0029704	FBtr0070649,FBtr0070648	1	2	2	60	X	4214950	4214969	CTTGAGTGTTTACCAACAGC		59	4214992	4215010	AACCATGGGCATTAGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fas2	FBgn0000635	FBtr0070666,FBtr0070667,FBtr0070665	2	3	3	60	X	4048781	4097236	TGCTCTTTAATAGAACTGACCC		59	4048742	4048763	CTTGTTTGGGATAAATCTCCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14417	FBgn0040353	FBtr0070566	1	1	1	60	X	2770446	2770464	AAGTACCTACGTCATTCCG		58	2770404	2770422	CTCTGGGAAATTGAACGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2709	FBgn0024977	FBtr0070486	1	1	1	97	X	2620747	2620765	AATCACAAGCAGGTCAGAC		59	2620826	2620844	GAAGGTGTGCTTCTTATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32806	FBgn0052806	FBtr0070302	3	1	2	78	X	1683687	1683705	CCAACCCATACAATGTGGA		59	1684187	1684205	TCATCTCATCACAAACCGA		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG3795	FBgn0025378	FBtr0070278	2	1	1	243	X	1603586	1603604	TCTGTACAACAAGGTTCCG		59	1603296	1603314	CATGTTGTCACAGATGAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	br	FBgn0000210	FBtr0070267	1	1	7	137	X	1531146	1531164	CCAATATCGATCCCTCAGC		59	1554704	1554722	TTAGAGAACGCACGTTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11384	FBgn0040363	FBtr0070251	3	1	1	60	X	1068918	1068938	CTTCTACAGGAATCTGTACCG		59	1068878	1068898	TATTACCTCATCCACATCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0110927	2	1	5	60	X	938204	938222	GGAGGAAGATCAAGTTCAG		57	938245	938264	TTATATTGTGAGAGTGCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14632	FBgn0029538	FBtr0070193	2	1	2	89	X	787265	787283	GTCGTATACGCGATATGCT		59	785610	785629	TTAACGTCTCTTCTGATTGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5273	FBgn0040382	FBtr0070136,FBtr0070137,FBtr0070135	1	3	3	63	X	655011	655029	GAGACCTCTAACATGACCG		59	655056	655074	CACAAATAATGCCTCCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	1	8	8	60	X	551391	551410	CATTATCTCATGGGATGCAG		58	551433	551451	TATCAGCTCAAACAGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40450	FBgn0085734	FBtr0114183	1	1	1	184	U	2072953	2072971	CATTCATCATTTGACCGGA		57	2072659	2072678	CCATGTCCACTAAATAGGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG40867	FBgn0085529	FBtr0113942	1	1	1	199	U	9327269	9327287	AATCCCATTGGATACTGGC		59	9327088	9327106	TTGCCTTGTATCACAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40275	FBgn0058275	FBtr0113858	1	1	2	83	U	1839079	1839097	TAGTGTTGTTGGTGCTACG		59	1839144	1840678	TCATTATGTGATCGCTCGG		59	NA	Nonspecific
Drosophila melanogaster	50	sphinx	FBgn0083990	FBtr0111045	1	1	3	60	4	996450	996468	TTCAAGAAGACCGATGTCC		59	996492	996510	GACTTTGACAATGCTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33521	FBgn0053521	FBtr0091471,FBtr0091472	3	2	4	192	4	1207179	1207197	TTTCGGAAATGGATTACCC		57	1208238	1208378	CTTCTCAGGTATTGTAGATCG		57	NA	
Drosophila melanogaster	50	activin-beta	FBgn0024913	FBtr0089209	1	1	1	99	4	1099133	1099206	CGGAGAAGGGAATAGATAAGG		59	1099054	1099074	CGGATTGTATCGGTTAAATCG		59	NA	
Drosophila melanogaster	50	CG2052	FBgn0039905	FBtr0089129,FBtr0089128	3	2	2	85	4	402798	402816	GTGTTCCTACTGTGATCGT		59	399509	402751	ATTTATAGGGTCGTTCTCCTG		58	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	1	7	7	82	4	208987	209060	CGGATCATAGACTTACGGA		57	208923	208941	GAAGCATGGTTTAGTCAGG		58	NA	
Drosophila melanogaster	50	Ank	FBgn0011747	FBtr0089172,FBtr0089171,FBtr0089174	2	3	4	82	4	149995	150014	AACAAGAAGTGAAACCTGTG		58	144503	149950	AAATGGTTGCGTCATTCTG		59	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156	2	9	10	81	4	103362	106346	TCCTAAGATGGGCTTAACTC		58	106387	106408	CATATCTGAACTTAGCATTGGG		58	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-3405d	FBgn0082957	FBtr0113592	2	1	1	99	3R	24428297	24428315	ATAGCAATGTTCGATGTGC		58	24428378	24428396	ATCATTGGTGCACAAACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	awd	FBgn0000150	FBtr0085864	2	1	1	141	3R	27571103	27571121	TGACTTCTGCATTCAGGTC		59	27570980	27570999	CTATTCGTAGATCCAGTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sap-r	FBgn0000416	FBtr0085714,FBtr0085713	1	2	2	80	3R	26709833	26709910	AGTACTACAAGATCTGCTCTG		58	26709773	26709793	GATCAATATAGGGTCGTTTGG		58	NA	
Drosophila melanogaster	50	CG15546	FBgn0039807	FBtr0085718	2	1	1	60	3R	26701181	26701200	AAGGATACTGAAGCAAACGT		59	26701140	26701158	GACTCGACTTTCCAGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CecA2	FBgn0000277	FBtr0085614	1	1	1	158	3R	26038004	26038022	CATCACCATTGGACAATCG		58	26038202	26038220	AGTCATCGTGGTTAACCTC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG1359	FBgn0039753	FBtr0085570	3	1	1	106	3R	26006277	26006296	TCAGTAAGATATCGCCACAC		59	26006362	26006533	GAGAACGAACTTTAATCCAGAG		58	NA	
Drosophila melanogaster	50	AdoR	FBgn0039747	FBtr0085581	3	1	1	106	3R	25962135	25962219	ATGTGGGTGAGTATTCACC		58	25962047	25962065	GATGTTGTTGAAACAGGGC		59	NA	
Drosophila melanogaster	50	sima	FBgn0015542	FBtr0085565	2	1	2	82	3R	25935492	25935577	CATCACATCAAAGAGTCCC		57	25935623	25935641	AAGAGAAGTCATCCTCCTG		57	NA	
Drosophila melanogaster	50	RpL32	FBgn0002626	FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555	2	4	5	61	3R	25871413	25871431	CGGATCGATATGCTAAGCT		59	25871308	25871326	CACTCTGTTGTCGATACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7824	FBgn0039711	FBtr0089927,FBtr0089926	1	2	2	60	3R	25684555	25684574	AAAGGAAGGACTCTTTCTGC		59	25684514	25684533	ATCACATCCTCGAACTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11897	FBgn0039644	FBtr0085387,FBtr0085386	2	2	2	80	3R	24986115	24986197	CGAAACGATTTGCAAATCTC		58	24986238	24986258	CTGATATCCGTCTGATTTGTG		58	NA	
Drosophila melanogaster	50	CG11880	FBgn0039637	FBtr0085373,FBtr0085372,FBtr0085371	1	3	3	73	3R	24951436	24951454	ATCACTGGATGTGACACTC		58	24951560	24951578	TTCATAGTGTCCCAGACGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11876	FBgn0039635	FBtr0085368,FBtr0085367	2	2	4	84	3R	24939870	24940162	TCGATCACGCAAAGATACTC		59	24940207	24940227	CGTGGACTTTCAATTATGAGG		59	NA	
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0110913,FBtr0110912,FBtr0091524,FBtr0091527,FBtr0091526,FBtr0113466,FBtr0091525,FBtr0091523	3	8	9	81	3R	24745225	24745244	CGTCATTCAAGATGATGCTG		59	24745285	24745963	TGTGGCCATGATCTTATATCTG		59	NA	
Drosophila melanogaster	50	CG5508	FBgn0027579	FBtr0085251,FBtr0085249,FBtr0085250	1	3	3	62	3R	23755849	23755867	GAAGTTCGAGTACCGACAG		59	23755951	23755969	ATTGCATGCTTCAGTACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hmu	FBgn0015737	FBtr0085164	2	1	1	194	3R	23115223	23115241	TAAGAAGACTCTGCTGGTC		58	23115399	23115753	TTGTATTTGAAGAGACGGC		57	NA	Nonspecific
Drosophila melanogaster	50	l(3)mbt	FBgn0002441	FBtr0085175	2	1	2	143	3R	23098743	23098763	GCAGTTCAATCGAATCATACG		59	23097907	23098569	GTTTGTTATTACCCGCACG		59	NA	InUTR
Drosophila melanogaster	50	CG5909	FBgn0039495	FBtr0085114	3	1	1	90	3R	22987262	22987280	CTACGGTCGGAATATACCA		57	22987334	22987476	ACAAAGATGGAAGTCCCTC		58	NA	
Drosophila melanogaster	50	CG6460	FBgn0039439	FBtr0085053	2	1	1	222	3R	22454161	22454180	CTCGAGAAGGAATTCTTCAC		57	22453958	22453976	GATCACCGATATCAGCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5467	FBgn0039433	FBtr0085028	2	1	1	131	3R	22424911	22424929	CTCGATGAGAAGATTGTGC		58	22426976	22426995	TATAATTCGCTCCTTGCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	dei	FBgn0008649	FBtr0085009	2	1	1	60	3R	22274290	22274308	TTCCAAGGATTCCTTCGAC		59	22274332	22274350	GAACGAACTAATACAGGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nf1	FBgn0015269	FBtr0100113,FBtr0084953,FBtr0084952	2	3	3	82	3R	21814618	21814636	AACATATTCTACCAGGCCG		59	21814679	21814753	GTTTCTCCAATCTTGTATCGTC		59	NA	
Drosophila melanogaster	50	CG5913	FBgn0039385	FBtr0084938	3	1	1	60	3R	21720019	21720037	CCAATGAGATCATGGATCG		57	21720060	21720079	CCCACTTTAAACTGATCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lnk	FBgn0028717	FBtr0084937,FBtr0084935,FBtr0084936	2	3	3	109	3R	21717659	21717678	ATGGCTACGATAATGGTCAG		59	21717750	21718182	CACTTCGTTGCAATGTCTC		59	NA	
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113387,FBtr0084928,FBtr0113388,FBtr0084927	3	4	7	80	3R	21535235	21539274	GAATTGGAATGTGGCAATAGG		59	21535175	21535194	CTTGAAGCGATTCTGAATGC		59	NA	
Drosophila melanogaster	50	Nmnat	FBgn0039254	FBtr0084749,FBtr0084750	3	2	2	120	3R	20771798	20771877	CAAGTATCAGAGCAACATTACG		59	20771958	20771976	CACCAGATCGTCTAGAAGG		58	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100632,FBtr0100636,FBtr0100637	1	3	17	82	3R	20521108	20521126	GACGCTGATCAAGAAATGC		59	20521842	20528854	CATTGCGATTGAGTACTAAGTC		59	NA	
Drosophila melanogaster	50	CG10232	FBgn0039108	FBtr0084471	1	1	1	60	3R	19545730	19545751	CATCGAGTATTTCAATGTCCAC		59	19545691	19545712	GATATCGCTTTCAAACCTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10182	FBgn0039091	FBtr0084486	2	1	1	88	3R	19414622	19414701	GAAAGAATCAGGACCAGCT		59	19414552	19414570	GTTGACCTCTACAATGCGA		59	NA	
Drosophila melanogaster	50	CG4374	FBgn0039078	FBtr0084427	3	1	1	61	3R	19236834	19236852	TCTAAGTTCCCAACAGCAG		59	19236791	19236809	CATTCCCATTATGTGCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	EloA	FBgn0039066	FBtr0084375,FBtr0084374	2	2	2	65	3R	19079219	19079237	ATGAGTCAGAAGCTCTAGC		58	19079324	19079342	CACCCGAATAGATCTTGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13830	FBgn0039054	FBtr0113272	2	1	1	88	3R	18907610	18907628	GCAAGAAGCGTGAAATCTG		59	18907430	18907561	TATCTCATCACGATTCTTGTGG		59	NA	
Drosophila melanogaster	50	CG13833	FBgn0039040	FBtr0084362	1	1	1	86	3R	18860008	18860026	ATATCAATGTTTCCGGAGC		57	18859824	18859958	TTACATTGGCCTTGTATGC		58	NA	
Drosophila melanogaster	50	CG4723	FBgn0039023	FBtr0084318	3	1	1	60	3R	18588894	18588914	TAAGACTTCGCTATGGAATGG		59	18588854	18588873	TTGCCATAGTTATAGCCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wfs1	FBgn0039003	FBtr0084335,FBtr0084334	1	2	2	63	3R	18514115	18514185	CAATGCTGCAGCTAATCAC		59	18514070	18514091	GATGTCATATAGGGTAAGACCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG33110	FBgn0053110	FBtr0084264	2	1	1	80	3R	18398292	18398393	GTATATGTTCTACGAGCACCT		59	18398435	18398453	CTATCGGAGTAGTCAACCG		58	NA	
Drosophila melanogaster	50	CG5315	FBgn0038984	FBtr0084283,FBtr0084284,FBtr0084282	2	3	3	83	3R	18370411	18370492	CTAATTCTGATGGGCCTCC		59	18370346	18370364	AAACTTTCCAGGGAACCAG		59	NA	
Drosophila melanogaster	50	CG12499	FBgn0038968	FBtr0084295	2	1	1	60	3R	18269769	18269788	GGAAACTCTTACCCTTAGCA		59	18269728	18269746	TTCCTCCAATTCTACACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18596	FBgn0038953	FBtr0084216	3	1	1	98	3R	18205005	18205023	CGTACCTGTGAAGTTCTGG		59	18205085	18205171	TTTCTCAGCAGTCATGCTC		59	NA	
Drosophila melanogaster	50	CG5382	FBgn0038950	FBtr0084237	3	1	1	97	3R	18191038	18191056	CTCTGAAGAGTTTCCTGTC		57	18190904	18190922	CTTAATGGCCTTCAGACTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6332	FBgn0038921	FBtr0084170	1	1	1	101	3R	17841174	17841192	AAAGAAAGCACCAAAGGTC		58	17841318	17841336	ATCTCCTCCAAATAGGCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31178	FBgn0064912	FBtr0084138	3	1	1	63	3R	17699905	17699924	ACCGTTATGGGATACTACGA		59	17699947	17699968	CACATTGGATCAAAGGATACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab11	FBgn0015790	FBtr0084010,FBtr0084011	2	2	2	77	3R	16940758	16940776	GTTTCATAGAAACCTCGGC		58	16940817	16940984	TGCGATAGATCTCTGTGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Pi3K92E	FBgn0015279	FBtr0083940,FBtr0083941	2	2	2	84	3R	16457025	16457246	GCTTACACTTTCTGAAAGACG		59	16456961	16456979	CTTTCCAGGTACGATTCGT		59	NA	
Drosophila melanogaster	50	CG4845	FBgn0038764	FBtr0083829	3	1	1	125	3R	15851269	15851287	GTTATTGCGACTATGGAGC		58	15851375	15851457	CGATAGCATCTCTAAACTGG		57	NA	
Drosophila melanogaster	50	Pk92B	FBgn0014006	FBtr0083818,FBtr0083819	2	2	2	81	3R	15708427	15708448	GATATGATCCTGGAGATGACTG		59	15708487	15708574	CGTACTCGTACTCGATATTAGC		59	NA	
Drosophila melanogaster	50	ort	FBgn0003011	FBtr0083784	1	1	1	92	3R	15488647	15488771	ATAGAAGGATTGTAACCACCAC		59	15488824	15488842	GTATTATCCGCGACTCCTG		59	NA	
Drosophila melanogaster	50	Prp18	FBgn0027784	FBtr0083717	1	1	1	60	3R	14856414	14856432	GAGAGCATACAGACAATGG		57	14856372	14856390	TCACATCCATGTCGTAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sgs5	FBgn0003375	FBtr0083461	1	1	1	286	3R	13421296	13421314	TCTTCAGGATTGTGTCTGC		59	13421620	13421697	AAGTCAGGAATGGTTTGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	beat-IIb	FBgn0038494	FBtr0083411	2	1	1	189	3R	13064760	13065209	CAAGTTGTGGAATTTCCGG		59	13059233	13059251	CAACCGTTCGAATGTACTG		58	NA	
Drosophila melanogaster	50	CG10326	FBgn0038453	FBtr0083336	3	1	1	110	3R	12470098	12470281	CCACAGTGTTTGTAATCGTC		59	12470354	12470372	ACATGAGGATGAGTAGGGT		59	NA	
Drosophila melanogaster	50	CG10311	FBgn0038420	FBtr0083324	1	1	1	83	3R	12177651	12177669	ATCGTCTTCTTCATCGACG		59	12176939	12177604	ATAGGTCATAATCGCGCAG		59	NA	
Drosophila melanogaster	50	ird5	FBgn0024222	FBtr0083236	1	1	1	64	3R	11872858	11872876	GCGAGAAAGACCTATTCGA		59	11872744	11872762	AATTATCGCACCATTGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083209	1	1	8	117	3R	11779943	11780309	TCAAATCGGACAGGTTACC		59	11780387	11780471	GGTATTATCCTTGACAGTTTCC		58	NA	
Drosophila melanogaster	50	Atx2	FBgn0041188	FBtr0083101,FBtr0083099,FBtr0083100	2	3	3	150	3R	11239225	11239300	TTATGCATGGGTCTTCTCAG		59	11239413	11239431	TAGTTCAGTGACGAGTTGC		59	NA	
Drosophila melanogaster	50	Trax	FBgn0038327	FBtr0083093,FBtr0083092	2	2	2	60	3R	11187825	11187843	GATCGCGGTTAACTTTAGG		58	11187867	11187885	GAACTGGTAGACATCCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6236	FBgn0038318	FBtr0083121,FBtr0083122	3	2	2	109	3R	11151728	11151746	GTATACGGGCATCATTCTC		57	11151560	11151656	AATTTACACGGTGAATCTCC		57	NA	
Drosophila melanogaster	50	Zeelin1	FBgn0038294	FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034	2	4	5	121	3R	11002151	11004015	CTACAGCCGAACAATTCCA		59	11001978	11001996	GCTTGTCCCTCAAGTAGAG		59	NA	
Drosophila melanogaster	50	CG7026	FBgn0038276	FBtr0083007	1	1	1	77	3R	10725439	10725457	CAAGATCCTCATTGTGGAG		57	10725380	10725398	TTGGAGGTCATGTAGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cv-c	FBgn0086901	FBtr0112632,FBtr0112630,FBtr0112631	1	3	3	82	3R	10225496	10230712	AGAAATCGAAGCTGTGGAG		59	10221740	10225453	ACTGATGATCTTCGTACATCTG		59	NA	
Drosophila melanogaster	50	NK7.1	FBgn0024321	FBtr0082941,FBtr0082942	1	2	2	81	3R	10167297	10169958	CTACCAAGAAGGAAAGTTCTG		58	10167236	10167254	CTGATATCCGGTGGTAGAG		58	NA	
Drosophila melanogaster	50	CG12207	FBgn0038220	FBtr0082922,FBtr0082921	3	2	3	146	3R	10116533	10124520	GCATTCGCAGTTTCAAGAG		59	10124630	10124648	ATGAGGGTCTCATTGTTCC		58	NA	
Drosophila melanogaster	50	CG14355	FBgn0038208	FBtr0082907	1	1	1	161	3R	9976715	9976733	TATGATGACGAACAACGCA		59	9976512	9976530	TTCATGCCAAAGTTGTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9312	FBgn0038179	FBtr0082825	2	1	1	81	3R	9591684	9591702	GATAAGCACCCAGAGTCTG		59	9591830	9591849	TAAATCGTCACTGGTGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Adgf-D	FBgn0038172	FBtr0082845	3	1	1	149	3R	9530171	9530189	TGTTCACCTACGATCAGTC		58	9529987	9530059	GATTTGGCAATAGAGCTTCC		58	NA	
Drosophila melanogaster	50	Hrb87F	FBgn0004237	FBtr0082852,FBtr0082851	3	2	2	162	3R	9484012	9484197	CGTTACTAGACAAGGTAAACAC		58	9483871	9483889	TGGTTCTGATCTTGTCTGC		59	NA	InUTR
Drosophila melanogaster	50	sqd	FBgn0086897	FBtr0082857	1	1	4	90	3R	9470139	9470160	GACTTATACTTGGAGGATATGC		57	9468921	9470088	CAAACAGTTTCCATCAGCA		58	NA	InUTR
Drosophila melanogaster	50	CG8476	FBgn0038127	FBtr0082781	2	1	1	60	3R	9045604	9045625	TTTCTACCTATATGTAGCCGGA		59	9045565	9045584	GATCACGTCCAATAGAACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8031	FBgn0038110	FBtr0082719	3	1	1	80	3R	8835327	8835346	TGCTGGATATACGTACTGTG		58	8835202	8835284	ATGAAGATTCGCTTGACGA		59	NA	
Drosophila melanogaster	50	GstD8	FBgn0010044	FBtr0082575	1	1	1	60	3R	8206308	8206326	AGAATGCCAAGGAAGTGAC		59	8206350	8206368	TTGATTAGCTGTACACCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	svp	FBgn0003651	FBtr0082564,FBtr0082562	3	2	3	133	3R	8126234	8126252	AATCCCTGCAAGAGAAGTC		59	8126349	8126615	CTCAATGACTTGTGAGGAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG34307	FBgn0085336	FBtr0112503	2	1	1	60	3R	7723586	7723604	CTATGCTTCGTAGGATTGG		57	7723686	7723705	GCGAATTTGTTAGAATTGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wkd	FBgn0037917	FBtr0082414,FBtr0082413	2	2	2	145	3R	7409655	7409673	ATGTGCTAAAGGCCTACTC		59	7409782	7409858	GTCCTGCAGGTATACATCG		59	NA	
Drosophila melanogaster	50	CG6693	FBgn0037878	FBtr0082367	3	1	1	63	3R	7046801	7046819	AAATCTTCAAGCCCATCAC		57	7046756	7046774	TCCGATTCCACATACTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ugt35b	FBgn0026314	FBtr0082375	1	1	1	60	3R	6995331	6995353	GAATCTCCTCTATCGTATACTCC		58	6995293	6995311	AGAAAGTCATTCGATCCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sodh-2	FBgn0022359	FBtr0082324	3	1	1	150	3R	6703537	6703613	CTGCAATGATTATTCCGCC		59	6703727	6703745	GATCATGACCTTGATAGCG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Fmr1	FBgn0028734	FBtr0082196	1	1	5	87	3R	5930706	5930805	GTGTTTCGAATCAAGGATCAG		59	5930639	5930657	CATTTGCAATGCTCTCCAC		59	NA	
Drosophila melanogaster	50	CG33784	FBgn0053784	FBtr0091785	1	1	1	98	3R	5894013	5894031	CCGACTTAGTTTACGATGG		57	5894150	5894169	CATCATTCAGAACCATTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Fst	FBgn0037724	FBtr0082101	3	1	1	75	3R	5471668	5471687	AATCAGTGGAATCCAAATGG		58	5471612	5471630	TGTTTCCGTGAGATTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8312	FBgn0037720	FBtr0082076,FBtr0082075	2	2	2	63	3R	5449440	5449459	CTCCTGCCCACTATTAACAG		59	5449485	5449503	GATCCTCGGCATTGTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8176	FBgn0037702	FBtr0113208,FBtr0113207	3	2	4	103	3R	5348606	5349271	CAATCAAGATCAGACACAACAG		59	5349335	5349353	CGTTCAATTGCTTCTTCCC		59	NA	
Drosophila melanogaster	50	CG8165	FBgn0037703	FBtr0082063	3	1	1	60	3R	5346086	5346104	CACTTTGGCACATCTTTCC		59	5346128	5346146	ACGCGGTTAAGTAAATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8165	FBgn0037703	FBtr0082063	1	1	1	60	3R	5344575	5344593	GGATATACAGGTTTGCAGG		57	5344615	5344635	CCAAATATAGCAGAACTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8135	FBgn0037689	FBtr0082030	3	1	1	99	3R	5232746	5232764	TGGGTCTCATCCATATGGA		59	5232885	5232905	GAGATGATGCCAATAACATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	neur	FBgn0002932	FBtr0082001,FBtr0082002,FBtr0082004,FBtr0082003	3	4	4	222	3R	4847924	4847942	GATATAAACGGCCAACTCG		58	4847658	4847676	GATTCTCGTAGCAGATGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13318	FBgn0037627	FBtr0081942	1	1	1	92	3R	4597896	4597977	GAGGATATCCCACTGTTCC		58	4597822	4597840	GACCACACTGATAGCTTCC		59	NA	
Drosophila melanogaster	50	CG14598	FBgn0037503	FBtr0081534	1	1	1	60	3R	3266774	3266793	AACCAAGAAATCGTACTACC		57	3266815	3266834	GGTCTTCAACTTATCCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst84Dc	FBgn0004174	FBtr0081587	1	1	2	81	3R	3190327	3190345	TTTGGCTTCTAAAGACCGT		59	3190207	3190225	ACAGCAGTAATATCCGCAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG1041	FBgn0037440	FBtr0110774	1	1	2	97	3R	2199092	2199189	TATCAAAGCCCAACGTCTG		59	2198948	2199033	GAGTTCTTGGTCAAATTCCAC		59	NA	
Drosophila melanogaster	50	CG10298	FBgn0037432	FBtr0081710	2	1	1	77	3R	2169304	2169322	ATGAGCAAGTACAAGCTGG		59	2169363	2169381	TAACTTGGGCACATAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12171	FBgn0037354	FBtr0078708	3	1	1	61	3R	1459821	1459842	CATTGTAAACGTGTCTAGTGTG		59	1459863	1459882	CATTGTATGCTAAGACTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14673	FBgn0037352	FBtr0078738	3	1	1	60	3R	1452327	1452345	TAACATGGAGTTCTGTCCA		57	1452285	1452303	CAATTTCCTCTCGAAGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12161	FBgn0037296	FBtr0078831	1	1	1	196	3R	1044502	1044520	AAATTATTGAGCTGCAGGC		58	1044259	1044277	GTCGGCATCTATATTCCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	opa	FBgn0003002	FBtr0078836	3	1	1	110	3R	679062	679080	TTTAACAGCTATGCCTCCC		59	679154	679172	GGAGAAGAGCATGGAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12587	FBgn0040685	FBtr0078853	1	1	1	115	3R	420490	420508	GTTCAGGCTATTGAAAGCG		59	420587	420605	TTCTCATCCACATCCTTCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:U49:66Da	FBgn0060292	FBtr0076634	1	1	1	60	3L	8594590	8594610	TGTCTTCTTGATAGGAAGTGC		59	8594630	8594650	CTTTCAGAGGGTTAAACTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-1837a	FBgn0086660	FBtr0091629	3	1	1	60	3L	5757427	5757446	TCAACACTTGCAAAGATCAG		58	5757386	5757405	AGTCCTGAATAATAGGCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arf79F	FBgn0010348	FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572	2	6	7	85	3L	22862823	22862841	TTAGCTTTACAGTGTGGGA		58	22862563	22862777	GATAAGACCTTGTGTATTCTGG		58	NA	
Drosophila melanogaster	50	CG7148	FBgn0046301	FBtr0078448	2	1	1	60	3L	21823922	21823940	CTGAAGCTCTACTACGACC		58	21823823	21823899	TCTTTAGGTTCGCTCTATCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32447	FBgn0052447	FBtr0078460,FBtr0078461	3	2	2	187	3L	21687570	21687588	CCCGTTCTGCTATTATCCT		58	21686807	21687419	GTCGTATAAACATGCCTGG		58	NA	
Drosophila melanogaster	50	CG9391	FBgn0037063	FBtr0078416,FBtr0078417	3	2	2	125	3L	21260335	21260353	TACCAGTGAATTCGGTACC		58	21260167	21260186	ATCGACATATTGAGAGCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34261	FBgn0085290	FBtr0112456,FBtr0112455	2	2	2	98	3L	21190186	21190205	GTTGTTGAATTTGCAGAGAC		57	21190265	21190284	CTGGATTTCTTGGTGATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fln	FBgn0005633	FBtr0074910	2	1	1	62	3L	19983284	19983302	AATACCAAGACCACAGACG		59	19983178	19983258	TCACTGCCACTGATATTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14182	FBgn0036922	FBtr0074913	3	1	1	75	3L	19972630	19972648	ATATAACCGACCGCAAGTG		59	19972573	19972592	CACAAAGATGCAGATCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(Tpl)	FBgn0014037	FBtr0074920	3	1	1	247	3L	19889938	19890020	TAATCAATTTACCGCCTGC		58	19887793	19887811	GAATTGGTCATAACGTGCG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG14104	FBgn0040786	FBtr0074926	2	1	1	64	3L	19800183	19800201	AATGAAACGTCAGAGGGTC		59	19800137	19800155	TTTAGGTCGTTGTACTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9372	FBgn0036891	FBtr0074945	3	1	1	136	3L	19600798	19600818	TATTCAACACCTACATCTGGC		59	19600916	19601111	CAGGTTAACCTCCATGAGG		59	NA	
Drosophila melanogaster	50	CG9368	FBgn0036890	FBtr0074942,FBtr0074944	2	2	3	124	3L	19595052	19595070	AGTTGAGAGCCAGAAATCG		59	19595818	19595836	ATATGGCATCGAAGATCCG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Shal	FBgn0005564	FBtr0112853	3	1	2	277	3L	19565870	19565890	CTGTACCTGTTATCGTATCGA		58	19562902	19565397	AAATTCTCGATCCGTTGTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG9279	FBgn0036882	FBtr0074976,FBtr0074975	3	2	2	80	3L	19535270	19535406	CTTCCAAAGAATCCAGTGAC		58	19535209	19535228	GGGAGACAAGGTTACTTCTC		59	NA	
Drosophila melanogaster	50	CG14086	FBgn0036860	FBtr0074994	1	1	1	80	3L	19272150	19272170	GTGCTGGTAATGTTTATCGAG		59	19272211	19272500	TCGCTGGTAATTATCCTCTG		58	NA	
Drosophila melanogaster	50	GNBP2	FBgn0040322	FBtr0075094,FBtr0075095,FBtr0075096	2	3	4	134	3L	18667368	18667387	CTATAGCATCAAGCCTCCAG		59	18667189	18667271	GGTTGGAGCATCAGATAGG		59	NA	
Drosophila melanogaster	50	GNBP2	FBgn0040322	FBtr0075097,FBtr0075094,FBtr0075095,FBtr0075096	3	4	4	177	3L	18667068	18667159	CCAAGCAATTGAGAATTGCA		59	18666910	18666928	TAGTTGTGAAAGTCGTCCC		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG6052	FBgn0036747	FBtr0075195	3	1	1	60	3L	17721809	17721830	GTTTATTTCTGTCCTACGACAC		59	17721770	17721788	ACTCCTCCATCGTTATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32167	FBgn0052167	FBtr0075296	1	1	1	61	3L	16998122	16998143	GCTGATAAATTTCTGGTGTTCC		59	16998082	16998100	AAGCAATTGGCAATATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	zetaCOP	FBgn0040512	FBtr0075352,FBtr0075353,FBtr0075351	2	3	3	112	3L	16666237	16666255	TTCCATTAGCCTGATCCTC		58	16665631	16666161	CATCCAGAATAATGCCTCC		57	NA	
Drosophila melanogaster	50	st	FBgn0003515	FBtr0075391	3	1	1	82	3L	16493263	16493341	GAATATAACCTGCTTTCAGGAG		58	16493384	16493402	CGTTGAAGCTGTACTTGTC		58	NA	
Drosophila melanogaster	50	CG33690	FBgn0053690	FBtr0091670	3	1	1	103	3L	16194898	16194983	CCCTATGATCACGATCTTATCG		59	16195044	16195065	GTGTATATGGCATAATCTCCGT		59	NA	
Drosophila melanogaster	50	RhoGAP71E	FBgn0036518	FBtr0075567,FBtr0075569,FBtr0075568	1	3	3	88	3L	15593708	15593797	CAAGTTCAAGGTCTCTACGA		59	15593848	15593866	AGTACTCATAGTTGTCGCG		59	NA	
Drosophila melanogaster	50	CG6888	FBgn0036490	FBtr0075644	1	1	1	60	3L	15201035	15201056	CTCAATATTAACCAAGTGGCTC		59	15201077	15201095	GATAACCACCGGATACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10089	FBgn0036369	FBtr0075822,FBtr0075823,FBtr0075820,FBtr0075821	3	4	4	211	3L	13462070	13462088	ATCGCCATACATGACAGTC		59	13461819	13461837	GTCATGATATAGGCCACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10984	FBgn0036305	FBtr0075919	1	1	3	151	3L	12743829	12744414	CTCGTCGACAGATTCATCC		59	12744529	12744547	ATTTACCATCGTTGCTGCT		59	NA	
Drosophila melanogaster	50	CG6928	FBgn0036240	FBtr0076049,FBtr0076050	1	2	2	80	3L	11999277	11999598	GAACTTTGAACAGATGCTCTC		59	11999640	11999658	ATGGCTACATTTCCAAGCA		59	NA	
Drosophila melanogaster	50	CG14133	FBgn0036192	FBtr0076132	1	1	1	179	3L	11684206	11684224	TAGCCGCTTTACAGTTGTC		59	11683403	11684008	CATCGCTCATCATATCATTCAG		59	NA	
Drosophila melanogaster	50	CG6091	FBgn0036180	FBtr0076143,FBtr0076141,FBtr0076142	3	3	3	119	3L	11600443	11600549	ACTGCTACCAGTCAAATCC		59	11600342	11600361	TGTAGGGATCCAGAATAGCA		59	NA	
Drosophila melanogaster	50	CG6216	FBgn0036139	FBtr0076220,FBtr0076221	1	2	2	103	3L	11143173	11143247	AAATGTGTTGTGGCAAGAC		59	11143088	11143106	CTTGTTGGAGGACAAAGGT		59	NA	
Drosophila melanogaster	50	Mnf	FBgn0036134	FBtr0076225	3	1	5	109	3L	11109260	11109278	TGGCAGAATTCCATACGTC		59	11108903	11108998	CGCGAATTATCCATGTGAC		59	NA	
Drosophila melanogaster	50	CG32063	FBgn0045770	FBtr0076286,FBtr0076287	2	2	2	60	3L	10459993	10460011	GAGGGTATGGAGAATGTGC		59	10460032	10460053	CAATACTTTGTAATGATCGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323	1	4	11	113	3L	9774996	9775719	ACCTGGGTAATTTGTCTGG		59	9775795	9775814	ACATATCGTCCTTCATGTCG		59	NA	
Drosophila melanogaster	50	CG3335	FBgn0036018	FBtr0076383	1	1	1	65	3L	9619737	9619755	TAGATGGTAATCCCGTGGA		59	9619842	9619860	CGCCATCATTATCTTGGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpS9	FBgn0010408	FBtr0076423,FBtr0076424	3	2	3	164	3L	9504210	9504228	CTGGCTAAGATCCGTAAGG		59	9503660	9503678	GTCCTCAATCTTCAGACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tsp66E	FBgn0035936	FBtr0076507,FBtr0076508,FBtr0076506	3	3	3	85	3L	8919887	8921127	GCATTGAGCAATTTACACAG		58	8921175	8921193	GCTCATGAAGAACATGACG		58	NA	
Drosophila melanogaster	50	Cp19	FBgn0000358	FBtr0076573	2	1	1	79	3L	8723493	8723511	GAGTACAGCAAGGTGATCC		59	8723554	8723572	TTGCCATACTGGTTCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ergic53	FBgn0035909	FBtr0076626,FBtr0076625	1	2	2	123	3L	8529702	8529720	CATGAATCAGGTCAAGCAG		58	8530054	8530072	TACGCTTAGGAACAATGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Cbl	FBgn0020224	FBtr0076614,FBtr0076615	3	2	2	189	3L	8420110	8420195	ACTATACTGTGAAATGGGCAG		59	8420404	8420422	CACAACGATTTGTTCGGTG		59	NA	
Drosophila melanogaster	50	CG8543	FBgn0035787	FBtr0076863	3	1	1	60	3L	7463061	7463080	AATGTCTACACTCCCAAGAC		59	7463020	7463038	AGAAGGACTTGGTGATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sh3beta	FBgn0035772	FBtr0076872	1	1	2	119	3L	7361074	7361997	ATAAGGAGGTGAAGAAGCG		59	7360973	7360991	TTTGCATCAGCTCCTTCTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG14830	FBgn0035755	FBtr0076888	2	1	1	153	3L	7245199	7245284	AGTGAAGAAGTTGAAGGGC		59	7245064	7245082	CGTGTACTCCGAATAGGTG		59	NA	
Drosophila melanogaster	50	CG14829	FBgn0035751	FBtr0076893	2	1	1	63	3L	7230906	7230925	TATATCCCTGGGACAAATGG		58	7230862	7230880	AAGCTCCTGATCTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF4E-4	FBgn0035709	FBtr0076963	1	1	1	96	3L	6658183	6658201	GATGATGCGAACAAGTTCG		59	6658025	6658126	GTATGAGTAGCACATCTAACCA		59	NA	
Drosophila melanogaster	50	CG4669	FBgn0035598	FBtr0077171	2	1	1	60	3L	5228736	5228756	AGTCAAATCTTCATCTCACCC		59	5228778	5228796	GGTAGAGCACTACGATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	axo	FBgn0026729	FBtr0073368	1	1	1	90	3L	4660401	4664136	CTTCTGGGAGATACGTCTG		58	4660329	4660347	TTTAATGGTGGTCGAGTGG		59	NA	
Drosophila melanogaster	50	CG13715	FBgn0035564	FBtr0073318	1	1	1	60	3L	4637501	4637520	GGGAATGGAAATGGAAATCG		59	4637460	4637478	TATTGACGCCATGGTATCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	dyl	FBgn0066365	FBtr0073341,FBtr0073343,FBtr0073342	2	3	3	68	3L	4295824	4295842	GTACGATCCCTATGTGCAG		59	4295774	4295792	TAGAAATCGTACCAGGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1295	FBgn0035509	FBtr0073222	1	1	1	83	3L	4204735	4204754	CATTGAACTTGAACCTGACC		59	4205226	4205244	GATCGTACAGAGGCTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9133	FBgn0035198	FBtr0100645,FBtr0100647,FBtr0100646	1	3	3	62	3L	1254991	1255009	ATCATGGACACCATGAAGG		59	1255035	1255496	GTAGCAAACCTCGATACCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	trio	FBgn0024277	FBtr0072648,FBtr0072646,FBtr0072645,FBtr0072649,FBtr0072644,FBtr0072647	2	6	6	80	3L	998873	998891	AATACATAGTCAGTGCCCA		57	998719	998831	TCAAGTTACTCAGATCCAGAC		58	NA	
Drosophila melanogaster	50	CG32479	FBgn0052479	FBtr0072589	1	1	1	84	3L	890876	890894	AATTGATAAGCCCACACCC		59	890942	891018	GTTGCAAATCATCTGCCAG		59	NA	
Drosophila melanogaster	50	CG13881	FBgn0035125	FBtr0072508	3	1	1	141	3L	278324	278412	AAGTTAAGACCAAAGACCGA		58	278516	278534	GTCTTGTGTTCCAAGAAGG		58	NA	
Drosophila melanogaster	50	snoRNA:Me28S-A2589a	FBgn0086023	FBtr0114299	2	1	1	84	2R	17212743	17212762	ATACTGAGTGCCTAAATCGA		58	17212809	17212827	TTATCAGACAAATGCCTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33431	FBgn0053431	FBtr0086423	1	1	1	62	2R	15624955	15624973	AATACATCGGTTCTCGTCC		59	15624911	15624929	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3494	FBgn0035008	FBtr0072295,FBtr0072296	3	2	2	64	2R	20362485	20362503	CATCGATGCTAGTGAATCG		58	20362530	20362549	TGTTTCCCAAGTTCAATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL12	FBgn0034968	FBtr0072174,FBtr0072175	3	2	3	145	2R	19948090	19948209	TAAATTGGTGTACCTGCGT		59	19948381	19948399	TGATCTTCAGACCCTTCCA		59	NA	
Drosophila melanogaster	50	Adk2	FBgn0022708	FBtr0072163	1	1	1	150	2R	19912520	19912538	TGAAGAAGGTCATGGATGC		59	19912652	19912733	AATGTGTCGAGCTTCTCAG		59	NA	
Drosophila melanogaster	50	CG4324	FBgn0034956	FBtr0114534,FBtr0072197	2	2	2	116	2R	19903818	19903839	GTACTACTAGTGCTGTATAGCA		58	19903663	19903741	CAAGGTAACTGACTGTGGA		58	NA	
Drosophila melanogaster	50	G-salpha60A	FBgn0001123	FBtr0072143	3	1	3	102	2R	19833770	19833964	AATACCAAACGCCAATCGA		59	19834030	19834128	ATACGCAGAAACTCGTCTC		59	NA	
Drosophila melanogaster	50	CG30410	FBgn0050410	FBtr0072005	2	1	1	65	2R	19243123	19243141	AATCCCAACATAGACGTGG		59	19243170	19243188	CTTGATCAGCACCATATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	jbug	FBgn0028371	FBtr0071918,FBtr0071917	3	2	3	86	2R	18618377	18618395	TTATTCTCCCAATAGCGCC		59	18618238	18618330	TCGTAACCATTCTTACTAACGG		59	NA	
Drosophila melanogaster	50	CG30281	FBgn0050281	FBtr0071760	2	1	1	80	2R	18002686	18002704	AAAGATCAGGCTGGAAGAG		58	18002745	18002842	GATGGGTTAATTGTCTCATGAC		59	NA	
Drosophila melanogaster	50	CG9294	FBgn0034666	FBtr0071720	1	1	1	60	2R	17748589	17748607	GGCAAACTTTCCCATTGAG		59	17748628	17748649	CAAGGTATTAATCAAGCCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9313	FBgn0034566	FBtr0071521	3	1	1	103	2R	16869937	16869956	GTTTCAGTACGACAAGACCA		59	16870022	16870102	TCATGAAGTCATGCGATCC		59	NA	
Drosophila melanogaster	50	Gr57a	FBgn0041240	FBtr0086241	2	1	1	60	2R	16573287	16573305	CTTAGCCGCAAAGTTATCG		58	16573190	16573211	TGAGTATGAGCAGGTAATTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13437	FBgn0034541	FBtr0086235	1	1	1	89	2R	16549768	16549843	TACGTGATCAATGCACCTC		59	16549896	16549914	GATCTTGTGGTTGTTGTGG		58	NA	Nonspecific
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494	2	7	7	152	2R	15418202	15419689	CTATTGAGGGTAAAGGCAC		57	15418068	15418087	CTCAATTGTAGATGTCCACC		57	NA	
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086494	3	1	7	75	2R	15425713	15433531	TTATGCTTGAGAGCCAACC		59	15425656	15425674	GTGTGATATTCGGGAGCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457	2	11	15	108	2R	15365201	15366256	TTCACTCTGGTCAAACCAG		59	15366328	15366346	TTGGAGAAGAAGCTCATGC		59	NA	
Drosophila melanogaster	50	CG7744	FBgn0034447	FBtr0086535	1	1	1	80	2R	15341639	15341657	TGTTATGGAGTGGGTATGC		59	15341699	15341770	AACTTCCCACCAGTATAAAGG		59	NA	
Drosophila melanogaster	50	CG5493	FBgn0034364	FBtr0086713	3	1	1	131	2R	14504809	14504827	ATCCCAATAGATCTGCCAG		58	14504619	14504717	CCAGATTGTCATTTATGTAGGC		59	NA	
Drosophila melanogaster	50	GstE8	FBgn0063492	FBtr0086676	2	1	1	60	2R	14295953	14295971	TATTACGAGGAGGCATGTG		58	14295994	14296013	TGAATTTCTTGAGGAGGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GstE2	FBgn0063498	FBtr0086670	3	1	1	60	2R	14287240	14287259	CTATTGTCTGCTACCTGGTG		59	14287281	14287300	AGATCCCTGGGATATAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sbb	FBgn0010575	FBtr0086767,FBtr0086766,FBtr0086765	3	3	3	180	2R	14175232	14175640	CAAATACGAAACAACTAGCTGG		59	14175073	14175091	GACTTCTCAATATCCGCGT		59	NA	
Drosophila melanogaster	50	CG10914	FBgn0034307	FBtr0086745	1	1	1	60	2R	14047227	14047246	CAAGGAAACACTTTGACTGG		59	14047269	14047287	ATGATGGGAAGATGCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33981	FBgn0053981	FBtr0100025,FBtr0100026	1	2	2	120	2R	13663153	13663233	ATCTGGTTCAGATGTCCTG		58	13663051	13663069	GAATAGTCCATGACGAGGT		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	icln	FBgn0029079	FBtr0086832	1	1	1	60	2R	13479117	13479135	ACAGTGATTCGGAAGACAG		59	13479159	13479177	ATAGCCTCATCCTCTAAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mthl4	FBgn0034219	FBtr0086956,FBtr0086957	1	2	2	107	2R	13333420	13333495	TTGTTGGATCTACACTGGC		59	13333331	13333349	ATGTAAATCGCCGAAAGGA		59	NA	
Drosophila melanogaster	50	mbl	FBgn0053197	FBtr0086993	2	1	4	183	2R	13163394	13163412	CAATATGAACAGCCTGCTC		58	13163557	13183348	TGTACATACCTTGATGCTGTC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15611	FBgn0034194	FBtr0086982,FBtr0086981	1	2	2	80	2R	13000840	13000860	CTATGTGAGCTTCACTATGGG		59	13000900	13000983	GTTTGATATGTCTGCAACCAC		59	NA	
Drosophila melanogaster	50	Nach	FBgn0024319	FBtr0089587,FBtr0089588,FBtr0087116	1	3	3	80	2R	12541203	12541223	CACATTGATTACGACGTACAG		59	12541077	12541164	TAAGCCCGAATAGAACTTATCG		59	NA	
Drosophila melanogaster	50	Hmgs	FBgn0010611	FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146	2	5	5	60	2R	12227690	12227709	CAGAAGGATACTTCCAAGCA		59	12227731	12227750	TGTGGAATAGGATAGCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mrj	FBgn0034091	FBtr0087193,FBtr0087196,FBtr0087194,FBtr0113084,FBtr0087195	3	5	5	163	2R	12092250	12092338	TATTCCGAGATGCCAATGG		59	12092105	12092126	GTCCATCATTGAGTAGTTAAGC		58	NA	
Drosophila melanogaster	50	Asph	FBgn0034075	FBtr0087220	3	1	4	164	2R	12002360	12002867	ATGATTAGGGAGAACTATGCC		59	12002993	12003011	TTTGTAAGCATCGATGGCT		59	NA	
Drosophila melanogaster	50	CG12854	FBgn0033965	FBtr0087467	2	1	1	60	2R	10657482	10657500	ATGAAGAGGATTCCCACTG		58	10657440	10657460	ATCTTATCTGTAGCCTTGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	phyl	FBgn0013725	FBtr0087516	1	1	1	60	2R	10319514	10319532	GAATACCTGAAACGCACCT		59	10319472	10319492	AGATATTGATCGTCTGGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34184	FBgn0085213	FBtr0112377	1	1	1	100	2R	10253605	10253626	GTGGATGATAATAGTTCAACCC		58	10253687	10253758	GGGTATCCTGATCTTTCCA		58	NA	
Drosophila melanogaster	50	CG8468	FBgn0033913	FBtr0087534,FBtr0087533,FBtr0087532	1	3	3	71	2R	10116748	10116766	ATTCCTGATGCTCTTCCAG		59	10116918	10116936	GTCATCACATAGAGGCCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	cg	FBgn0000289	FBtr0112795	1	1	7	82	2R	10067364	10067382	CTTCCAGAAGAACCACCTG		59	10067428	10067936	GTACAACAAGCTGTTGCTG		59	NA	
Drosophila melanogaster	50	CG6145	FBgn0033853	FBtr0087687,FBtr0087685,FBtr0087686	3	3	3	60	2R	9426355	9426491	GCTAGTGACCTTTAAAGATGG		58	9426315	9426334	GCAGACGATAAAGTCAATCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13331	FBgn0033850	FBtr0087672	1	1	2	96	2R	9409561	9409579	CTTCATCCTCGACTACGAG		58	9409834	9409852	AATCTCGTAGGATTCCGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12488	FBgn0033772	FBtr0087851	1	1	1	86	2R	8636959	8637039	AGCAGAAGATTGTCTACTCC		58	8637088	8637106	TCGAACGGATGTTAACCAG		59	NA	
Drosophila melanogaster	50	CG8860	FBgn0033691	FBtr0088011	2	1	1	171	2R	8067276	8067294	ACAAGGTTGTCAAATTCGC		59	8067123	8067141	ATGTGAATCAGCTTGACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Oda	FBgn0014184	FBtr0088015,FBtr0088013,FBtr0088014	3	3	3	285	2R	8055514	8055533	CAGAACAGATCACGATAGGG		59	8055182	8055203	CAGAATCGTATTCCAATTGGTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Oda	FBgn0014184	FBtr0088015,FBtr0088013,FBtr0088014	1	3	3	283	2R	8055513	8055531	GAACAGATCACGATAGGGC		59	8055182	8055203	CAGAATCGTATTCCAATTGGTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Ef1alpha48D	FBgn0000556	FBtr0088036,FBtr0088035	3	2	2	64	2R	7781102	7781120	TTAACATTGTCGTGATCGG		57	7781148	7781166	GTAGATCAAGTGTCCGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ERp60	FBgn0033663	FBtr0088059,FBtr0088058	3	2	2	84	2R	7776136	7776155	ACAAGTTCGAGTCATCTTCC		59	7776007	7776089	AGACCATGGAAGTTCTCCT		59	NA	
Drosophila melanogaster	50	CG9027	FBgn0033631	FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897	1	4	4	188	2R	7269617	7269636	GATAATACCCAGGTCAAGGG		59	7269385	7269466	ACCGTGATCAACCTTATCG		59	NA	
Drosophila melanogaster	50	CG13203	FBgn0033628	FBtr0088130,FBtr0100284	2	2	2	69	2R	7263259	7263277	ATGTGATTACCCTGGTGTC		58	7263310	7263328	ACTGAACTGTTATCCTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lambdaTry	FBgn0043470	FBtr0088121	2	1	1	60	2R	7224521	7224542	ATGAGGTATAGAGGAAATCACC		58	7224562	7224581	TGATGATCTGGTTTGATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sha	FBgn0003382	FBtr0088120	1	1	1	129	2R	7220173	7220298	CTCATCTACTAGCGGAACC		58	7220390	7220409	TCCTCCGGAATTATGTTCAG		59	NA	
Drosophila melanogaster	50	Vhl	FBgn0041174	FBtr0088115	1	1	1	63	2R	7167595	7167613	GTTCCGGGATTACTACACG		59	7167640	7167658	AATCGGCTGAAAGATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30020	FBgn0050020	FBtr0088235	1	1	1	82	2R	6775890	6775982	TGACTCACAGCAATCTTCC		59	6776026	6776046	GTAATGCTGTATTAGATCGGC		58	NA	
Drosophila melanogaster	50	CG16728	FBgn0033539	FBtr0088258	3	1	1	81	2R	6529715	6529795	TTTATGCCAATTTGCCACC		59	6529652	6529670	TGGATGAGAATGTTCTGGC		59	NA	Nonspecific
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089355	1	1	26	80	2R	6389907	6389925	TCCGTAATTGGCTAATGCT		59	6389547	6389865	TGGACTGAGTTAGTTTGTCTG		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089365	2	1	26	187	2R	6419760	6419778	TTGAGGATTTGACACTGGA		58	6375918	6419548	ATCCACGGTAATCACTTGG		59	NA	
Drosophila melanogaster	50	CG33477	FBgn0053477	FBtr0088320	2	1	1	60	2R	6296771	6296790	TAATGTCCATGATACCAAGC		57	6296730	6296749	TTTACACGCATTGATAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CAP	FBgn0033504	FBtr0088342,FBtr0088343	2	2	10	135	2R	6180369	6180855	AGATCAGAACATTCGAACG		57	6181135	6181154	CTCATATACTCGTGCTTGAC		57	NA	
Drosophila melanogaster	50	Pfk	FBgn0003071	FBtr0088420	2	1	3	186	2R	5997663	5997740	GTCCTCGAGATATTTCAGGA		58	5997888	5997907	TTAAGAAATCCGTTGTGCAG		58	NA	
Drosophila melanogaster	50	CG2249	FBgn0040773	FBtr0088396	3	1	2	93	2R	5938170	5938189	TTTACCTAATTGCGGGAGTC		59	5938245	5938319	TCATCCTTGGGATCATTGG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG1648	FBgn0033446	FBtr0088493	2	1	2	110	2R	5707414	5707433	CAAACAAACTTACAAACCCG		58	5700148	5700166	TCACCGAAGTTCTTCAAGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12929	FBgn0033429	FBtr0113060,FBtr0088541	3	2	2	75	2R	5473936	5473954	TATTGGATACCCTTCGGTC		58	5473879	5473897	CTGTAATACTGGCCCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	prel	FBgn0033413	FBtr0088507	3	1	1	289	2R	5312149	5312167	ATTACAGCTGGATGAACGT		58	5312419	5312769	GACAATTTCATCGATTGCCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8235	FBgn0033351	FBtr0088676	3	1	1	118	2R	4814974	4814992	ATCTGGAGAAGATCGACTG		58	4814874	4814893	CTTCAGGTTACACATGACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8248	FBgn0033347	FBtr0088678	2	1	1	62	2R	4807160	4807178	CGTCGTTTGATAAAGTCCC		58	4807116	4807134	TGTGTTACTCTTCTTGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8584	FBgn0033322	FBtr0088724	3	1	1	61	2R	4588445	4588463	TAATCATCGACAACTCGCC		59	4588402	4588422	CTTAATGGGAATAGCGTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2291	FBgn0033279	FBtr0088802	3	1	1	60	2R	4148559	4148577	GAAGAAGATCGACGAAGTC		57	4148517	4148536	ATGATGGTACTCTGGATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	U2A	FBgn0033210	FBtr0088941	3	1	1	60	2R	3563684	3563703	TGCAATACATAAACCCATGC		58	3563643	3563661	TGTGGAATCTTATAGCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12107	FBgn0033209	FBtr0088924	2	1	1	111	2R	3562263	3562281	TATTCGGCATCTTTCTGGG		59	3562425	3562444	TTTATGGCGTACAGGTAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	scra	FBgn0004243	FBtr0088911,FBtr0088912	1	2	3	160	2R	3481548	3481566	CTCGAACAACATTAACGGC		59	3481690	3481771	CTAGCGTGATCCTGAAGTC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111087,FBtr0111059,FBtr0111074	3	3	60	94	2R	3244596	3249235	TTGGTCATCACAGAACCTG		59	3244520	3244539	CTTAAGGCTTGACCCATAGG		59	NA	
Drosophila melanogaster	50	CG15236	FBgn0033108	FBtr0086160,FBtr0086161	2	2	2	229	2R	2722213	2722231	CCATCTAGTAACAGCTCGG		59	2722424	2723008	ATCTGTCCAAGATCTGTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Eb1	FBgn0027066	FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130	2	5	5	84	2R	2642342	2642416	CAAATCAGGTGATGGATATGC		59	2642460	2642480	TCAATATCCCGCAACTTAGAG		59	NA	
Drosophila melanogaster	50	Opbp	FBgn0050443	FBtr0086109	1	1	1	81	2R	2542550	2542568	ATAAACGCTGTGGTAAACG		58	2542613	2542692	AGTTATCCACGTCAAACAC		57	NA	
Drosophila melanogaster	50	bin3	FBgn0033073	FBtr0085993,FBtr0085992	3	2	2	81	2R	2126344	2126362	GTAGGATTCAGTCACAGCT		58	2126406	2126497	TTGCATACAACTGTATGGGT		59	NA	
Drosophila melanogaster	50	CG14471	FBgn0033049	FBtr0085970	2	1	1	60	2R	1888232	1888250	GCTATAGTCGCAACTCTGG		59	1888273	1888292	GGTTTAGTCTCCTCCTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11163	FBgn0025693	FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053	1	4	4	80	2R	1662571	1662644	GCATCTCGTTACAGACTCC		59	1662509	1662529	TTATATCTTGGGCTGGATACG		59	NA	
Drosophila melanogaster	50	CG17528	FBgn0032999	FBtr0111275,FBtr0111277,FBtr0111274,FBtr0111276	1	4	4	82	2R	705345	705363	TTCTATATGCTGTCTGCGG		59	705227	705299	AACGTCAATCTTTAGCCCA		59	NA	
Drosophila melanogaster	50	CG17493	FBgn0040010	FBtr0111255	2	1	1	60	2L	22443432	22443452	GATCTATTTGACAACGAAGGC		59	22443473	22443492	TAATGGCCACCTTAAGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5929	FBgn0032982	FBtr0085963	1	1	1	80	2L	22198418	22198437	CAACTCTTGTGAATTCCACC		59	22196740	22198375	TGTAGTTCATTGCATGCTG		58	NA	
Drosophila melanogaster	50	CG1832	FBgn0032979	FBtr0085964,FBtr0100407	2	2	2	130	2L	22168219	22168237	ATACAATTACGCCCTGGTC		59	22168054	22168125	TGGATATGGTGTTAGCTGC		59	NA	
Drosophila melanogaster	50	CG1421	FBgn0032966	FBtr0085928	1	1	1	60	2L	21903549	21903569	ACTACAGGAATGGCTATTGTC		59	21903591	21903609	GTTGATCGGAAATGATCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2225	FBgn0032957	FBtr0085918,FBtr0085915	3	2	5	124	2L	21670624	21670643	CTCTACTGAACTTACACCCG		59	21670466	21670537	CTATTAACGATCGCACCGT		59	NA	
Drosophila melanogaster	50	His1:CG33840	FBgn0053840	FBtr0091844	1	1	1	69	2L	21496919	21496937	AATTTAAAGGAACGTGGCG		59	21496969	21496988	CGCATTTATAAGTGGCAGTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8671	FBgn0032938	FBtr0114602	1	1	3	151	2L	21278287	21278305	TCAGTGTCCTTTATGTCGC		59	21278419	21281140	CTGGGATTCCTCATTAGCTC		59	NA	
Drosophila melanogaster	50	CG8678	FBgn0032935	FBtr0081487	2	1	1	166	2L	21213357	21213375	AGACTAAGCCTTCGAATCC		58	21213153	21213227	AAACTTGGCAGAATCAGAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG9248	FBgn0032923	FBtr0081470,FBtr0081471	2	2	2	60	2L	21160375	21160394	GTACATGGTTACAGATCGAG		57	21160417	21160435	GAAGTAGTCTCCACTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RPA2	FBgn0032906	FBtr0081438	3	1	1	150	2L	20925841	20925923	AAAGGGAGAAGGAATAGTGC		59	20925710	20925728	GGTGTAGGTGATCTTCGTC		59	NA	
Drosophila melanogaster	50	CG9317	FBgn0032879	FBtr0081394,FBtr0081395	1	2	2	92	2L	20729939	20729957	GATGACTATTGGTGTCGCA		59	20729654	20729883	TTCGTCGTTATCCAGTTCC		59	NA	
Drosophila melanogaster	50	CG13966	FBgn0032838	FBtr0081304	3	1	1	61	2L	19971147	19971165	GAAGATCATCGACACCCTG		59	19971104	19971122	TAGCTTCAATGGTCTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10026	FBgn0032785	FBtr0081237,FBtr0081236,FBtr0081238	3	3	3	89	2L	19457157	19457234	GCTCTACTAGTGACCTCCA		59	19457287	19457305	AAATATCTTGAATGCCGCG		58	NA	
Drosophila melanogaster	50	fon	FBgn0032773	FBtr0081222	3	1	2	129	2L	19385700	19386087	GATTTCCAACAAAGTTTGGG		57	19385284	19385302	CAAAGCTACCGCTATAACC		57	NA	
Drosophila melanogaster	50	CG33120	FBgn0053120	FBtr0081118	3	1	1	90	2L	18844259	18844278	TGCTGATGTTATCATTCCTG		57	18843438	18843456	TTTGAGATGGTCAGGTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mst36Fb	FBgn0086682	FBtr0081075	3	1	1	81	2L	18672276	18672347	CAGTAGTTTGACTGATCCG		57	18672213	18672234	GTTAAGCATTAGTCTCTGATCC		58	NA	
Drosophila melanogaster	50	CG15142	FBgn0032645	FBtr0080995	1	1	1	64	2L	17498486	17498504	GAGTACAAGGAGGTGATGG		59	17498440	17498458	ATTATTTGCAACTGGGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976	3	4	6	108	2L	17394483	17400406	GCTTATACAGATAACAGCAGC		58	17400476	17400494	CAATGAAGGCAATCTGTCC		58	NA	
Drosophila melanogaster	50	CG15140	FBgn0032631	FBtr0112773	3	1	1	61	2L	17286438	17286456	TTTATGTGCTCCTGGTCAG		59	17286478	17286499	GTTTATTTGATCCTGAACAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17331	FBgn0032596	FBtr0080936	1	1	1	98	2L	16731682	16731700	ATCTGGCCGAATATCTTCG		59	16731537	16731555	AGTCAATGAAGGTGAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	VhaSFD	FBgn0027779	FBtr0080941,FBtr0080940,FBtr0080942	2	3	3	122	2L	16724785	16724867	AACTTCCAGGTGCAATACC		59	16724681	16724700	ACAATCGCTGAGGATATCAG		59	NA	
Drosophila melanogaster	50	grp	FBgn0011598	FBtr0080886,FBtr0080884,FBtr0080885	1	3	4	80	2L	16692116	16696595	ATCGAATAGAACCAGACGTG		59	16696638	16696656	GGTAATTGAGTCCGGACAG		59	NA	
Drosophila melanogaster	50	CG31826	FBgn0051826	FBtr0080762	3	1	1	250	2L	15772679	15772698	ATACTTTAGTCAGTGAGCGT		58	15772389	15772466	TTAGGTCCTCGCATTTCTC		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG15266	FBgn0028860	FBtr0080708	1	1	1	60	2L	15256800	15256818	GGTGCTGAAAGAGGATCTC		59	15256842	15256860	GATCTCCTCGTTGTACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15283	FBgn0028844	FBtr0080632	2	1	1	66	2L	14447986	14448600	AAAGAAACTACAGAGGGCG		59	14447938	14447956	CTGGCAATGTCAAAGTGTC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG33115	FBgn0028542	FBtr0080617	1	1	1	87	2L	13968826	13968905	TTGCTATATGACCTGCGAG		59	13968757	13968777	CGTCGTATTCTTATCGTATCG		58	NA	
Drosophila melanogaster	50	CAH1	FBgn0027844	FBtr0080539	3	1	1	186	2L	13803944	13803962	GGATACACCGAAGAGAACG		59	13808958	13809043	AGCAATAGCCAGGATTGAC		59	NA	
Drosophila melanogaster	50	CG16890	FBgn0028932	FBtr0080575,FBtr0080574	2	2	2	60	2L	13783334	13783353	CTTAACCTACCGAATGAGAC		57	13783293	13783311	CTCGGATTACATCGATGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kuz	FBgn0015954	FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660	3	5	5	88	2L	13551656	13558807	CATCGTAAATGGTTACGCA		58	13609817	13609835	TGAGTGTTTCATAGTGGGA		57	NA	
Drosophila melanogaster	50	CG16813	FBgn0032490	FBtr0080446	1	1	1	80	2L	13228225	13228245	CTCATCGAACAACAATACCTG		59	13228287	13228305	ATAGTAGAGACTCAGGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020	2	17	17	87	2L	12723992	12724013	CAAGACCTATCAGATCAGACAG		59	12724061	12724214	TTTGAGCACCTTAATGCCA		59	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090023,FBtr0090026,FBtr0090022,FBtr0090029,FBtr0090025,FBtr0090014,FBtr0090024	3	8	17	186	2L	12724032	12724051	CGTGTTAAGTTGATGAACGA		58	12724335	12724774	CTAATGAAACCAGGAACGG		58	NA	
Drosophila melanogaster	50	bun	FBgn0010460	FBtr0111004,FBtr0080377	1	2	6	178	2L	12477157	12536283	GACTGAAAGTGCATCTGGA		59	12458106	12458124	TGAGAATGCTGTTCTCGAG		59	NA	
Drosophila melanogaster	50	bun	FBgn0010460	FBtr0080378	2	1	6	170	2L	12482648	12482666	CCACAGTCGTCAATATGGA		59	12458211	12477120	ACTTGACCAGATCCATTGC		59	NA	
Drosophila melanogaster	50	Aats-thr	FBgn0027081	FBtr0080333,FBtr0080332,FBtr0080331	3	3	3	73	2L	12105094	12105112	CTACGACATGCATCTGGAG		59	12105203	12105221	TTTGCTTAACCAGACCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14930	FBgn0032366	FBtr0080245	3	1	1	95	2L	11521185	11521203	TCTGGAGTTCGTAGATGGT		59	11521046	11521127	CTTGCCAAAGTATAAGCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32830	FBgn0052830	FBtr0080205	3	1	1	63	2L	11255929	11255947	CTTGACCATGAAGAGAACG		58	11255974	11255992	CTTCATGAGTAGCGTTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33305	FBgn0032351	FBtr0080221	2	1	1	60	2L	11159922	11159940	ATCGCGATGAATACAGTCC		59	11159880	11159898	ATGGCATTAAGCATTCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nup154	FBgn0021761	FBtr0089881,FBtr0089882	3	2	2	91	2L	11006082	11006168	TAGTCTGATCACGACTGTG		58	11006223	11006241	CAAGATGTAGTTTGTCGGC		58	NA	
Drosophila melanogaster	50	CG18561	FBgn0032301	FBtr0080190	2	1	1	74	2L	10792422	10792440	GACATGGCTCCATAAACAC		58	10792366	10792384	CTTTCGTCTGCTTAAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17127	FBgn0032299	FBtr0080136	3	1	1	60	2L	10771193	10771212	TCAATCTCTTCGAGATCCTC		58	10771234	10771253	GACTGCAGGTTGTTTATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6415	FBgn0032287	FBtr0080108	1	1	1	60	2L	10704205	10704223	TCAATCTCTAGTAGCCGTC		57	10704244	10704265	GGTAAGTAGTTTCGATAGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7456	FBgn0032258	FBtr0080038	3	1	1	81	2L	10487109	10487127	CATGAAGAACTCCGATCTG		57	10486986	10487067	CTCCTCCATGAAATATCTTTCC		58	NA	
Drosophila melanogaster	50	KdelR	FBgn0022268	FBtr0080023,FBtr0080021,FBtr0080022	1	3	3	60	2L	10427496	10427515	TCAATCATGAGTTTACCGTG		57	10427536	10427556	ACCGATTCCAAATAGATCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34367	FBgn0085396	FBtr0112592	1	1	1	134	2L	10348760	10348778	CACATAATCACAATCCGGC		58	10348181	10348662	TTATAGCAGCTGCGTACTG		59	NA	
Drosophila melanogaster	50	SamDC	FBgn0019932	FBtr0079994	3	1	2	133	2L	10340804	10340880	CTACTGTGAAATCTGGTATCGA		59	10341019	10341040	CTCCGGAGTAATATGAATTGTC		58	NA	
Drosophila melanogaster	50	CG4953	FBgn0032204	FBtr0079984	1	1	1	87	2L	10267722	10267802	CTCTATTGCATCAAGCCCA		59	10267853	10267871	AGACGATGTCCAGTTTACC		58	NA	
Drosophila melanogaster	50	CG18619	FBgn0032202	FBtr0089735,FBtr0089736	1	2	4	89	2L	10264812	10264830	GGTATCAGTACCTGGAGGA		59	10264883	10264958	CCATTGAATTAACGACGCG		59	NA	
Drosophila melanogaster	50	Pros35	FBgn0003151	FBtr0079948	3	1	1	91	2L	10222061	10222080	AAGATGAAATCATCCGTCAC		57	10222134	10222210	AGTGATGTCATACTGACCG		58	NA	
Drosophila melanogaster	50	Gdi	FBgn0004868	FBtr0079862	1	1	1	291	2L	9492856	9492874	TAAGCTCTACTCCGATTCG		58	9492501	9492519	GTCCAGAATGCAAATGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079622	3	1	4	161	2L	8245101	8245119	ATTCCGGTGATGATCTTCC		59	8244490	8244976	GGAGAGGTTTACCTTCTCC		58	NA	
Drosophila melanogaster	50	CG7356	FBgn0031975	FBtr0079534,FBtr0079533	2	2	2	149	2L	8026472	8026554	CTCAAGTTCAAGATCGCTG		58	8026666	8026685	AATCTCGTAGTGCCTATAGC		58	NA	
Drosophila melanogaster	50	Rapgap1	FBgn0085403	FBtr0112604,FBtr0112605,FBtr0112603,FBtr0112606	2	4	4	94	2L	7499877	7499898	CGGATAAATTCAGTGTGAACAC		59	7499746	7499824	ACTGCAGGTATTTAGATTGGG		59	NA	
Drosophila melanogaster	50	CG32829	FBgn0052829	FBtr0079370	1	1	1	64	2L	6915983	6916001	GGACGAGTACATCAAGGAG		59	6915937	6915955	ACTTCTTATGATGTCCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	osm-6	FBgn0031829	FBtr0079333	2	1	1	124	2L	6556352	6556426	TCAATGATGTGGAGCTGAG		59	6556246	6556264	AAACATCTGCTTGAAGTCC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG13991	FBgn0031785	FBtr0079202	3	1	1	60	2L	6140214	6140232	ATGTCCCAAGAACTACGAG		58	6140256	6140274	AAGAAAGAACTTCTGCCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34179	FBgn0085208	FBtr0112372	1	1	1	60	2L	6048627	6048647	CGAAATGTCGTACTTACTCAC		58	6048587	6048605	GTCGTAGAACTTGTAGCCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	slmo	FBgn0029161	FBtr0079218,FBtr0079217,FBtr0112945	3	3	3	73	2L	6047423	6047441	AACAGATGGTGCTGAAGAC		59	6047368	6047386	CTCATAGTAGAGCACCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slmo	FBgn0029161	FBtr0079218,FBtr0079217,FBtr0112945	1	3	3	71	2L	6047423	6047441	AACAGATGGTGCTGAAGAC		59	6047370	6047388	CATAGTAGAGCACCTCGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12511	FBgn0031729	FBtr0079113	3	1	1	61	2L	5678958	5678976	GCTCAAGACATTCTCACAG		58	5679001	5679019	TTTCTCTGACCTCTAGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nompC	FBgn0016920	FBtr0079074,FBtr0079075	3	2	3	112	2L	5358663	5358681	ATGACACCACTACACTTGG		59	5358757	5358836	GGATTATAGCCGTTCTCGA		58	NA	
Drosophila melanogaster	50	CG33995	FBgn0053995	FBtr0100048,FBtr0100050,FBtr0100049	1	3	3	80	2L	5045911	5046150	TTATCGGCGCTAGAAATCC		59	5046193	5046212	CATGTACTCGTTGTAGTCCT		58	NA	Nonspecific
Drosophila melanogaster	50	CG3792	FBgn0031662	FBtr0078997	3	1	1	60	2L	4978269	4978289	GGTGACTTTATGATCATCCTC		57	4978311	4978329	CCAGAATAACCGAATTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3251	FBgn0031622	FBtr0077422	3	1	1	60	2L	4689519	4689538	AAGTGTTTATCGAGGAGCAG		59	4689478	4689498	AGTGGATGTAGATTATCGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33003	FBgn0053003	FBtr0077434	1	1	1	92	2L	4401671	4401689	GAAGACACGTATTTACCCG		57	4401917	4401935	TGATCATGATTGTGTCCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305	1	4	10	179	2L	3626210	3634250	ATGTCATGGAAGATGGACG		59	3626049	3626067	TGATGGTCTGAAAGCACTG		59	NA	
Drosophila melanogaster	50	CG2991	FBgn0031474	FBtr0077627,FBtr0077625,FBtr0077626	1	3	3	121	2L	2866633	2866651	CCTCACAATTGCATCAGTC		58	2866736	2866826	GTTAACTGGAACCTTGGTC		57	NA	
Drosophila melanogaster	50	CG18557	FBgn0031470	FBtr0077689	1	1	1	60	2L	2845570	2845588	AATGCTATTTCTTGGCCGA		59	2845528	2845546	TTTGAGAACTGTGACAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rad1	FBgn0026778	FBtr0077747	2	1	1	60	2L	2573555	2573573	CCTCCTAGAACTGCATCTG		59	2573513	2573534	GAACTGAATGAATATCTCCTCC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14346	FBgn0031337	FBtr0077926,FBtr0077927	2	2	2	173	2L	1368285	1368303	AAACCCTGAGCACTTACAC		59	1368578	1368596	GTTGGACGCAAATGAACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5397	FBgn0031327	FBtr0077920	3	1	1	60	2L	1241658	1241676	CAATTGTCTCGGAAACAGC		59	1241700	1241718	CCGATCTCATCACCATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5001	FBgn0031322	FBtr0077972	3	1	1	87	2L	1192132	1192150	AACCCGATTTCTTCTCCTC		58	1192257	1192276	GAGTGTGATCTGAAAGAGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4896	FBgn0031319	FBtr0077968,FBtr0114467,FBtr0077970	2	3	3	81	2L	1181781	1181861	ATGAGGGTCTATCCTATCGT		58	1181905	1181923	CTCCTATTTGGTGGAGGAG		58	NA	
Drosophila melanogaster	50	RpI135	FBgn0003278	FBtr0078054	3	1	1	76	2L	405981	406000	TCATTTGACTCTAACTTGCG		58	406096	406116	CTATAAGATGCTTGGGAATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33992	FBgn0045202	FBtr0100045	3	1	1	60	2L	328014	328035	GAGAAAGGCATGAATAAGAAGG		59	327975	327996	TATCCTCATCCTTATCTTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL10	FBgn0031231	FBtr0078124	2	1	1	60	2L	204005	204023	CTAAGAGCAGTACTCCTGC		59	204045	204065	CGCTGTATATTGATCTTACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32657	FBgn0052657	FBtr0073625	3	1	1	100	X	11981403	11981422	CTTAAATACTCGCCATTGCT		58	11981543	11981561	TAGTGTAGTCCAGTCATGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	tty	FBgn0015558	FBtr0077224	3	1	2	163	X	21203386	21204059	AAACTACTCCAAGACCCTG		58	21203241	21203259	CTCCTCCATTCTGTAGACC		58	NA	Nonspecific
Drosophila melanogaster	50	CG14213	FBgn0031047	FBtr0074744,FBtr0074743	1	2	2	115	X	19533766	19533784	GTACCCTTTCTTGTCGACC		59	19533938	19533956	GAAAGGTGATCACCTCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32533	FBgn0052533	FBtr0074786	3	1	1	64	X	19368797	19370159	TTACGACAAGCTGGATGAC		59	19368751	19368770	TCCTATCGTCACTTGAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fim	FBgn0024238	FBtr0074443,FBtr0074441,FBtr0074442	1	3	3	87	X	17182017	17182035	AACAACCATCCAGGATTGG		59	17181556	17181966	AATTGCGGTAGGTCTTCTC		59	NA	
Drosophila melanogaster	50	CG4768	FBgn0030790	FBtr0074332	1	1	1	178	X	16688407	16688499	CAAAGAATCATGTGATGGTCTC		59	16688638	16688656	GTGGATTTGAGTTGCATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9903	FBgn0030756	FBtr0074297	2	1	1	249	X	16433701	16433791	TGGCAGATTCTTGTAGCTG		59	16433470	16433488	CATAGAACAGGACGACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nipsnap	FBgn0030724	FBtr0074258,FBtr0074257,FBtr0074259	1	3	3	277	X	15965372	15965390	TCTTAGCTTGATGCAGGAG		59	15964887	15965071	GCAGAGATTTGTAACACCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG8239	FBgn0030683	FBtr0074087	2	1	1	163	X	15643975	15644055	GAATGAAGTTCATCGATTGGC		59	15644180	15644198	TATCGTAGAGTCGGGACAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14407	FBgn0030584	FBtr0073989	2	1	1	127	X	14732200	14732218	TTAGCTGACACTTGAACAG		57	14732091	14732109	AATCTGGTATCTCGGATGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11151	FBgn0030519	FBtr0073819	2	1	1	202	X	13633779	13633797	CTTGCTATACGACCATCCC		59	13634051	13634069	GTTCTCCTTCAGTCCATCG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG32635	FBgn0052635	FBtr0073780	2	1	1	82	X	13377307	13389879	CAAGCAGTTTACGCTTCTG		59	13389924	13389943	TTCGACAGCATTATCAACGA		59	NA	
Drosophila melanogaster	50	CG12725	FBgn0030483	FBtr0073788	2	1	1	60	X	13296387	13296406	ACGCATAGATCTGGAAAGTG		59	13296346	13296364	ATCGAGTTCAGTCAAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073483,FBtr0073492,FBtr0073491	3	3	12	180	X	11276005	11281814	ATAGCTGATAATCAGCGCA		58	11281957	11282028	GTATCTGTGAAGTCTGGGAC		59	NA	
Drosophila melanogaster	50	CG2909	FBgn0030189	FBtr0071441	3	1	1	92	X	10220980	10220998	TACACGAACGTACATTGGG		59	10221115	10221134	ATAAATTCCGGTAGATGGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071474,FBtr0071478,FBtr0071477,FBtr0071475	1	7	7	94	X	10172050	10172137	CCGAGGCCTTTAGATTCAG		59	10171974	10171993	GTAGCTCTCGAAAGTCTCTG		59	NA	
Drosophila melanogaster	50	CG32691	FBgn0052691	FBtr0071435	2	1	1	78	X	10058624	10058643	CATTACTGAAAGTGCGACAG		59	10058684	10058702	GTACCAGGATCACAACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3106	FBgn0030148	FBtr0071403	1	1	1	132	X	9554223	9554329	CCTACAGCATTTGCATATCTC		58	9554111	9554129	ATCAGTACGATCACGATGG		58	NA	
Drosophila melanogaster	50	CG33692	FBgn0064121	FBtr0091675	2	1	3	165	X	6766947	6771957	AACCACATGTCACTAGCTG		59	6772086	6772104	CATTACCCGAATTCGAGGA		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG14435	FBgn0029911	FBtr0071042	1	1	1	80	X	6735769	6735867	CTTCAATGGTATCAAGTGTCC		58	6735709	6735729	GTTAGGCACATGACTAAATGG		59	NA	
Drosophila melanogaster	50	sqh	FBgn0003514	FBtr0070877	1	1	1	101	X	6117686	6117704	TTCGACGAGGAGAATATGG		58	6117530	6117621	ATACATCTCGTCCACATCC		58	NA	Nonspecific
Drosophila melanogaster	50	CG32751	FBgn0052751	FBtr0070880	2	1	1	63	X	6091928	6091946	TTACGGACTTCGTGTATCC		58	6091651	6091901	ATTTGAACAGCTGTGAGGA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12680	FBgn0029740	FBtr0070726	2	1	1	60	X	4891582	4891639	CAGGGATTAGCTGTATCCT		57	4891663	4891681	TACTGTTCGCATTCTTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	norpA	FBgn0004625	FBtr0100671,FBtr0070651,FBtr0100670,FBtr0070650	2	4	4	119	X	4243572	4243590	CAAGGTCGATGAATACGGA		59	4243738	4247510	ATCTTCGGATCCTTTGGTG		59	NA	
Drosophila melanogaster	50	CG14424	FBgn0025644	FBtr0070563	1	1	1	60	X	2820669	2820690	CTGCTTAAGTTCAAGAAGATCG		59	2820630	2820648	TCTCGTTGCTTGACTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	crm	FBgn0000376	FBtr0070495,FBtr0070496	1	2	2	80	X	2629130	2629220	GGGATATACTGGATCCGTC		58	2629068	2629086	CGATTTCCTGGAACTTGTG		58	NA	
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	1	13	13	80	X	2567070	2567088	ATGGAGGGTAATCACACCT		59	2567131	2567221	CTGTATTGAGAGCTCATGCT		59	NA	
Drosophila melanogaster	50	CG14781	FBgn0026871	FBtr0070258	1	1	1	67	X	1371537	1371555	GATCTCAAGAAGGAGTCCC		58	1371586	1371604	TTGGGCTTGATAGTGAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13361	FBgn0029532	FBtr0070149	2	1	1	60	X	646259	646355	AAATTCACGCTACAAGGGA		59	646217	646236	GTATTTGGTCTGATTGTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mod(r)	FBgn0016038	FBtr0089724,FBtr0089723	3	2	4	103	X	516379	516485	TCAGCATATCAGGATTGCAG		59	516551	516569	ACGTGTTGAGGAAAGTCTG		59	NA	
Drosophila melanogaster	50	CG41536	FBgn0085675	FBtr0114123	3	1	1	62	U	8007484	8007547	TCCCTATGGATCGATAGGC		59	8007440	8007458	ACTTGATCTCGGTGTTCAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40268	FBgn0058268	FBtr0113853	3	1	1	178	U	374791	375406	ATTCGTTCTTCATGGTGTG		58	374631	374650	ATAAATCGAGCTTGCTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11360	FBgn0039920	FBtr0089091	3	1	1	60	4	705657	705676	AAATAGAAGCTCACATTGCC		58	705698	705717	GTAATAGCATCACCACTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS3A	FBgn0017545	FBtr0089177,FBtr0089176	1	2	3	81	4	87357	87476	GACAAGTACAGGTCGATGG		59	87294	87313	AGAGGTACCCATCTACAGTC		59	NA	
Drosophila melanogaster	50	RNaseP:RNA	FBgn0046696	FBtr0085775	3	1	1	66	3R	27043157	27043175	GCATTGAAACCTTTCGTGG		59	27043109	27043127	TTGAGTTCTGCCTTAGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11337	FBgn0039846	FBtr0113314	3	1	3	120	3R	27229895	27230064	TTCAGTTCTGGCAGAATACC		59	27229794	27229814	GATAATCTTTGTGGAAGAGCG		59	NA	
Drosophila melanogaster	50	Aph-4	FBgn0016123	FBtr0085734,FBtr0085733	2	2	2	215	3R	26877630	26877708	CATCTCGTATGCCAATGGT		59	26877887	26877905	ATCAAACTGGAACCAGGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpL32	FBgn0002626	FBtr0114556,FBtr0085592,FBtr0085593,FBtr0085594,FBtr0114555	3	5	5	60	3R	25871413	25871431	CGGATCGATATGCTAAGCT		59	25871309	25871327	ACTCTGTTGTCGATACCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ocn	FBgn0041102	FBtr0085599	2	1	1	186	3R	25863082	25863157	GAGGAAATCTTTGAGGAAATCC		59	25862862	25862880	GGAATTTGGTCCAAGACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7920	FBgn0039737	FBtr0085604	1	1	2	212	3R	25840612	25840630	AACTACTTCACCTACGTGC		59	25840418	25840436	ACCGAAAGATTGCAAACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7911	FBgn0039735	FBtr0085606,FBtr0113308	2	2	2	65	3R	25829745	25829763	AGTGACCTTCAAACTGGTG		59	25829613	25829716	AAGTTCATCTCGACCTTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Ptp99A	FBgn0004369	FBtr0100523,FBtr0085423,FBtr0085424,FBtr0085422,FBtr0110981	3	5	5	80	3R	25309106	25309196	CGTCATTGTGGATAGATATGG		58	25309238	25309256	CAGTACTCCATCTCGATGG		58	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	2	8	8	121	3R	24962130	24962213	ACCAATGATAAGCCCTACTC		58	24962294	24962315	CCCATGAACATATAGGTTTCAC		58	NA	
Drosophila melanogaster	50	CG1647	FBgn0039602	FBtr0085326	2	1	1	185	3R	24646210	24646228	CAGAAGATCTACGAGCTGG		59	24646431	24646518	ATCAATTAATCTTGCGGGC		58	NA	
Drosophila melanogaster	50	wdb	FBgn0027492	FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206	2	7	7	129	3R	23392424	23392442	AAATTCTTAGGACTGCGGG		59	23392249	23392331	ATCCGTTGATGATACTGCC		59	NA	
Drosophila melanogaster	50	CG5815	FBgn0027574	FBtr0085106,FBtr0085107	2	2	2	131	3R	22939931	22940011	AAAGACGCATTTACGACGA		59	22940106	22940124	AACGACGCTTATCATACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	beat-VII	FBgn0039447	FBtr0085050,FBtr0085051	1	2	2	60	3R	22489063	22489326	AATCGACTGGGACAATTCC		59	22489021	22489039	TAGATCGAACTGGACATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5471	FBgn0039440	FBtr0114538	2	1	1	212	3R	22455687	22455705	TTCTCCGTAGTTCTTTGCC		59	22455881	22455899	GGATTGAGATCCTTCCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	m6	FBgn0002632	FBtr0084959	2	1	1	97	3R	21858693	21858711	TCTTGTCGTAACCATGTCG		59	21858772	21858790	TATCGTATCGCTGACTGTC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG17195	FBgn0039369	FBtr0084921	1	1	1	60	3R	21602703	21602722	TATTGGTCACCTTCATAACG		57	21602662	21602680	CTAGTCATATAGCAGGCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11892	FBgn0039313	FBtr0089645,FBtr0089644	2	2	2	113	3R	21108435	21108454	GATTGCCTACTACTTTAGGC		57	21108529	21108615	GCGTAGAATTTCTTCTGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpb10	FBgn0039218	FBtr0084688	2	1	1	88	3R	20543422	20543523	AATACACCGAAGGAGATGC		59	20543575	20543593	TTCGATAAGATCCACGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13605	FBgn0039150	FBtr0084586	2	1	1	232	3R	19935988	19936086	AGAAAGCCATTGACTCTGAG		59	19935775	19935793	ATGGAAGAAGGTAGTGCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG33337	FBgn0053337	FBtr0084485	3	1	1	81	3R	19416875	19416964	CTTCGCAAATGATATGTGCC		59	19416813	19416834	TAGCAGGATAGGAGATATGAGG		59	NA	
Drosophila melanogaster	50	Dph5	FBgn0024558	FBtr0084280	3	1	1	60	3R	18408736	18408754	ATCTGGAGATGTACACCTC		57	18408624	18408715	CCATAGAACTCTTGCATATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31169	FBgn0051169	FBtr0084217,FBtr0084218	2	2	2	80	3R	18208161	18208181	GAGATCATAAACACTCGTCAC		58	18208222	18208299	ATCATTTACAGCGATCAGGT		59	NA	
Drosophila melanogaster	50	CG5732	FBgn0038934	FBtr0084200	1	1	1	108	3R	18041087	18041105	GAAGTTCCTCGAGTCTCAG		59	18041239	18041257	ATAAAGCCCGTATCTTGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31424	FBgn0051424	FBtr0084249	3	1	1	60	3R	17941568	17941586	TATTGAAAGCTACCAGCGA		58	17941526	17941545	AATTAAATCCTCTGAGGTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5412	FBgn0038806	FBtr0083909	2	1	1	251	3R	16403301	16403379	AAAGAAGTTGACCTCCATCC		59	16403593	16403611	ATGAATGTCTGCTTCTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4462	FBgn0038752	FBtr0083850	1	1	1	176	3R	15748415	15748433	GTACCGAACACTATTGCCA		59	15748027	15748102	ATCAGCATCCATTGAGTCC		59	NA	
Drosophila melanogaster	50	CG17806	FBgn0038548	FBtr0083527	2	1	1	60	3R	13628577	13628595	GATTCGGACACTGAGACTG		59	13628535	13628555	CATCCACCCTACTTTCTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17562	FBgn0038449	FBtr0083329	2	1	1	77	3R	12442644	12442722	GCTCATTAAGCGTTTAAAGC		58	12442762	12442780	GACCACAGTGCTAGTAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083209,FBtr0083210,FBtr0083205,FBtr0083204	2	8	8	81	3R	11780338	11780357	TTGGATCCTTCTTGTCATCG		59	11780398	11780482	GAGTCGAGAATGGTATTATCCT		58	NA	
Drosophila melanogaster	50	CG6118	FBgn0038339	FBtr0113240,FBtr0113239	1	2	2	91	3R	11249454	11249474	AGGTGAATGTCAAGTATGAGG		59	11249257	11249401	GTCCAGGTTCTTCTCTGTG		59	NA	
Drosophila melanogaster	50	CG6236	FBgn0038318	FBtr0083121,FBtr0083122	2	2	2	108	3R	11151728	11151746	GTATACGGGCATCATTCTC		57	11151561	11151656	ATTTACACGGTGAATCTCC		57	NA	
Drosophila melanogaster	50	CG17304	FBgn0038267	FBtr0083012	2	1	1	64	3R	10685076	10685094	AAATGATCATCGAGGTGCT		59	10685030	10685049	CATCATTCTAGTGGCATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7362	FBgn0038258	FBtr0083015	1	1	1	208	3R	10577776	10577794	CCTGCGATATTGTACTCGA		58	10575272	10577605	AGTACTGAAAGTGTATGCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5724	FBgn0038082	FBtr0082657	1	1	1	60	3R	8566066	8566153	GATTGTACAAGGAATTGTTCGG		59	8566173	8566192	TTTACCAGTTCGGAGTACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12267	FBgn0038057	FBtr0082635	2	1	1	80	3R	8287255	8287330	AAGCCTATTGACTGAGGAC		58	8287373	8287392	TCCATATCCACCACATACAC		58	NA	
Drosophila melanogaster	50	CG10038	FBgn0038013	FBtr0082614	1	1	2	121	3R	8176029	8176110	ATGCATTCGATGGAGAAGG		59	8175926	8175944	CTTCTGGTAGTGCTTCTCG		59	NA	
Drosophila melanogaster	50	aur	FBgn0000147	FBtr0082483	2	1	1	250	3R	7789481	7789561	AAACCAAGACTGAAACCCA		59	7789775	7789793	ATACAGACGCAGGATATGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6959	FBgn0037956	FBtr0082517	3	1	1	95	3R	7650662	7663895	CATTTGAGGCTTCAACAACC		59	7650586	7650604	CCGATCGCTAGGATAATGG		59	NA	InUTR
Drosophila melanogaster	50	CG6950	FBgn0037955	FBtr0082522,FBtr0082519,FBtr0082520	3	3	4	118	3R	7647072	7647092	CGAGGTGATCATTATTGAACC		58	7646915	7646933	CAGAGCTTATTGGTCCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18764	FBgn0042205	FBtr0082417	3	1	1	106	3R	7453681	7453699	ACCAACGAATCATTCACCA		59	7453769	7453860	ATTGGTGTGAGTCCTTTCG		59	NA	
Drosophila melanogaster	50	CG31386	FBgn0051386	FBtr0082359	2	1	1	136	3R	7103452	7103471	ATAAAGGTTAGAGGGAAGCA		58	7097286	7103354	CAACAATCGCATATTCATGG		57	NA	InUTR
Drosophila melanogaster	50	CG31388	FBgn0051388	FBtr0082356	3	1	1	124	3R	7064217	7064235	ATAATCGGGACACTTCCTC		58	7064322	7064688	ACAGACGAATTTGGTATCTG		57	NA	
Drosophila melanogaster	50	CG6629	FBgn0037860	FBtr0082380	3	1	1	60	3R	6941201	6941219	GCAATTAAGGCACTTGCTC		59	6941159	6941178	TTTAGTAGCCAGAAGACGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rrp46	FBgn0037815	FBtr0082248	2	1	1	162	3R	6239342	6239360	CTTGGAGTGTAACTACCGA		58	6239486	6239562	AATACTGCCACGATCTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rlc1	FBgn0014023	FBtr0082120,FBtr0082121	3	2	2	169	3R	5341237	5341255	CGTATCAAGTCCAACAAGG		58	5341035	5341053	CTCACTACTGTCTCCAGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9836	FBgn0037637	FBtr0081930	1	1	1	247	3R	4649167	4649185	TGACTACAAGGTCAAGCAG		59	4648747	4648768	CGATTCCTAAACTTCTATGCAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG8351	FBgn0037632	FBtr0081918	2	1	1	115	3R	4628710	4628801	GTTTCAACCTCTTCCAAGG		58	4628880	4628898	GATCATAATTGCGTCGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34301	FBgn0085330	FBtr0112497	1	1	1	118	3R	4599195	4599213	CATACCTAAGCTCCATGGC		59	4599295	4599382	ATTTGGTTTCTGGGCTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7994	FBgn0037599	FBtr0081875	2	1	1	106	3R	4418269	4419006	CAAACATGTTGCAACACTG		58	4419075	4419094	CTTTCTGCTTGTATTGGTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31453	FBgn0051453	FBtr0081898	2	1	1	67	3R	4386924	4386942	CATCTACGAGACAGGACTC		58	4386812	4386830	GTTCAGAGAACATCAGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33722	FBgn0064126	FBtr0091720	2	1	2	60	3R	4072107	4072181	GAGAATAATGCTTTAGGGCAC		59	4072202	4072221	AGGTTGGTAGCATCTTTCTC		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG7800	FBgn0037552	FBtr0081795	2	1	1	60	3R	4044629	4044647	ATTCCCAAACTTCTAACGG		57	4044668	4044689	TGATATTCTCGGATAGATCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rtnl2	FBgn0015831	FBtr0081548	2	1	1	60	3R	3355237	3355258	ATCTTACGTTTCTATCCTCACC		59	3355198	3355217	CCAGATAAAGAGTCTCCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi8	FBgn0037415	FBtr0078598	3	1	1	185	3R	2081298	2081316	TTCAGTTCGTCAGTTCTGG		59	2081464	2081776	CCTCGTTATCGAATTTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rm62	FBgn0003261	FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653	1	6	6	154	3R	1829622	1829746	GAGGAGAAATTGAAGACCCT		59	1829487	1829505	TTGTCACCGTGAATAGCTC		59	NA	
Drosophila melanogaster	50	CG10979	FBgn0037379	FBtr0078631	2	1	1	80	3R	1620950	1620968	ATTTCATCAGCCACAAACG		59	1621009	1621112	TGGAATTCTGATCTGTGTATCC		59	NA	
Drosophila melanogaster	50	pncr008:3L	FBgn0047000	FBtr0091957	3	1	1	63	3L	6213715	6213734	CAGTTCTTTGAGTTCTCGAC		58	6213757	6213840	CCAACTAGATACTTGATCACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41122	FBgn0069929	FBtr0111162	3	1	1	106	3L	24315595	24316744	GAACCGGATATCAAGAAGC		57	24316814	24316832	TATGGTTCTATGCTGGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7145	FBgn0037138	FBtr0078446,FBtr0078447,FBtr0078445	2	3	3	83	3L	21830927	21830945	TGAGACCATGAAACTGGTG		59	21830809	21830880	CACTTGACGAAATCCTCGT		59	NA	
Drosophila melanogaster	50	M6	FBgn0037092	FBtr0078355,FBtr0078356	1	2	2	96	3L	21504264	21504284	AGTAGGAATCTTCTGCTTCAC		59	21504342	21504418	AGCTTCGATCCATATCAGG		58	NA	
Drosophila melanogaster	50	CG34000	FBgn0054000	FBtr0100055	1	1	1	128	3L	20980777	20980795	CAATTCCCATTCGCTATCG		58	20978052	20978073	GGTCTTGTCATATTTAGTTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13813	FBgn0036956	FBtr0074827	3	1	1	61	3L	20225593	20225673	TGAGCCTAATTCTGATCAACC		59	20225693	20225714	CATAGCGAGACATTTGAAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7770	FBgn0036918	FBtr0074894	1	1	1	262	3L	19916967	19916985	ATTGAGTCGTACCAGAACC		58	19917298	19917400	TCCTTCTCCATGTTCTCCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6839	FBgn0036831	FBtr0075069	1	1	1	60	3L	18911646	18911664	AATTACCTTCCAAACGGCT		59	18911688	18911706	TTGGGTGTACAGTTTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32201	FBgn0052201	FBtr0075105	2	1	1	202	3L	18603129	18603346	CATTGGAGAAGGAAATCAGAG		58	18603564	18603582	AATTTCCCATGGCTATGAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG13727	FBgn0036711	FBtr0075243	3	1	1	60	3L	17334083	17334104	GCTAGTGACCTAAATGATAACC		58	17334044	17334063	TATTCCCACCTAGTTTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7707	FBgn0036703	FBtr0075212	3	1	1	81	3L	17237076	17237095	AACGTATTCAGTGCTGAGAG		59	17237138	17237219	TTCGAAATTGTCGCAATAGG		58	NA	
Drosophila melanogaster	50	CG9706	FBgn0036662	FBtr0075327,FBtr0075326	2	2	2	60	3L	16777552	16777571	GCTTATTACTACGTCCTGCT		59	16777593	16777612	TGGAGTACAGGAATACTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34244	FBgn0085273	FBtr0112438	1	1	1	116	3L	14228643	14228721	TTCCTTCTGGCTTACATCG		59	14228545	14228563	ATTATCCTCGGTCACATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100041	1	1	6	98	3L	14223199	14223286	AAGATTGTCTGGAACTGCT		58	14223348	14223366	CTGCATATTCGGTCTTGGT		59	NA	
Drosophila melanogaster	50	CG8100	FBgn0036410	FBtr0075779	1	1	1	60	3L	14076908	14076927	GAGGAACTCATTACAATGGG		57	14076950	14077067	TGCCTTCCTTATAGCTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nplp2	FBgn0040813	FBtr0075839	3	1	1	97	3L	13349867	13349886	CTGCCCAAGAATTTCTTACC		58	13349946	13350119	CTTGAAGAGACCCTCAACC		59	NA	
Drosophila melanogaster	50	CG34429	FBgn0085458	FBtr0112730	3	1	1	193	3L	13056703	13056721	GAGTCTGTGTCCTGAAGAG		59	13056930	13056948	ATACACCTGATCGCAATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	toe	FBgn0036285	FBtr0075980	2	1	1	114	3L	12416885	12416903	GATAGTAGTGCCGGAAGTG		59	12416723	12416809	CGCCTTCGATATCTATCATCC		59	NA	
Drosophila melanogaster	50	CG14122	FBgn0036282	FBtr0075985	2	1	1	143	3L	12393887	12393965	CATCATTGCTTCAAGAGGC		59	12393762	12393780	AGAACCGATCATCAAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9760	FBgn0036259	FBtr0076021	2	1	1	137	3L	12151110	12151129	AACTCCATCGGGATATTGTG		59	12150942	12150960	ATTGTGCACATTTCCACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14135	FBgn0036193	FBtr0076111	2	1	1	270	3L	11685459	11685540	TATGCTCCTTAAAGCGTGAG		59	11686325	11686346	CTCGTTCTTTGATTCTTCAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18815	FBgn0042138	FBtr0076105,FBtr0076104,FBtr0076103	3	3	3	81	3L	11622535	11622553	GAATGTGACGTTCAAGACG		59	11622598	11622692	ACTGATGATGTCCTTGACG		59	NA	
Drosophila melanogaster	50	chrb	FBgn0036165	FBtr0076093	2	1	1	64	3L	11487796	11487815	TCTTCATTGAGTTCGAGAGC		59	11487953	11487973	CGGATCCACTTTAAAGTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7560	FBgn0036157	FBtr0076173	1	1	1	80	3L	11418887	11418906	AGGGATACACTAGTTTAGGC		58	11418949	11419034	CTCCAGCATCAATCTTTGC		59	NA	
Drosophila melanogaster	50	CG6321	FBgn0036117	FBtr0076242	2	1	1	86	3L	11053818	11053900	AAGTCCCGTCAATTGTGAG		59	11053750	11053769	TCAAAGTCCAACATTGTGGA		59	NA	
Drosophila melanogaster	50	CG6404	FBgn0027615	FBtr0076271,FBtr0076272	2	2	2	138	3L	10877848	10877866	CTAAGAAGGGATTCGTCGG		59	10877654	10877672	AACTTGTACGTCTTGACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	ect	FBgn0000451	FBtr0076305,FBtr0076306,FBtr0076307	2	3	3	290	3L	10189411	10189429	ACAGACGGTCAACAATGAG		59	10188794	10188921	TCCTCATCTTCATCATCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18177	FBgn0036039	FBtr0089410,FBtr0114566,FBtr0089411	1	3	3	80	3L	9721525	9721616	GAAGAGAAGATTTACGCTTCAC		59	9721657	9721675	ACATAGGTGAATCCGTCCT		59	NA	
Drosophila melanogaster	50	Glu-RIB	FBgn0028431	FBtr0076431	3	1	1	123	3L	9250544	9250562	CTTCAAATACGCGATGCTC		59	9250649	9251208	CTGATTGCAAATCAGTCGT		58	NA	
Drosophila melanogaster	50	CG6511	FBgn0035923	FBtr0076570	1	1	1	116	3L	8717225	8717301	GGGCTCAAGAGGAATACAG		59	8717381	8717399	GTTTCACATACAACGGCTC		59	NA	
Drosophila melanogaster	50	CG7112	FBgn0035879	FBtr0113153,FBtr0076605	1	2	2	80	3L	8343180	8343257	CTCCTTCATATGCCTGAGG		59	8343301	8343319	TTTGTAGAGATCACGGAGC		59	NA	
Drosophila melanogaster	50	CG7188	FBgn0035871	FBtr0076711,FBtr0076712	2	2	2	109	3L	8301272	8301291	CAAGTACCTCTATCTGGGTG		58	8301055	8301200	AAAGTTGAGTCACTTGCAC		58	NA	
Drosophila melanogaster	50	CdsA	FBgn0010350	FBtr0076688	2	1	1	80	3L	8122640	8122723	ATGATCACGACGTTACTGG		59	8122765	8122785	GCCATGAATTCGATAAACCTG		59	NA	
Drosophila melanogaster	50	ple	FBgn0005626	FBtr0076957,FBtr0076956	3	2	2	167	3L	6709238	6709257	TTAACTCACCATACCACACC		59	6708456	6708813	TGAACCAGTATACCGTGGA		59	NA	
Drosophila melanogaster	50	fd64A	FBgn0004895	FBtr0073192	3	1	1	164	3L	4020499	4020518	AATCGAGGATAACGACAGTG		59	4020644	4020719	TCATTTGAATCCTTTCCCGA		59	NA	
Drosophila melanogaster	50	Ubi-p63E	FBgn0003943	FBtr0073178	2	1	3	119	3L	3902597	3902615	AAAGTAAAGCGCAATCAGC		59	3901740	3901758	GTCTTCACAAAGATCTGCA		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	yellow-g	FBgn0041709	FBtr0072902	3	1	1	60	3L	2270501	2270953	AAGCCATTCGTCTATGTGG		59	2270459	2270477	CGGTGATGTCGTATACCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13807	FBgn0035323	FBtr0072878	3	1	1	78	3L	2263447	2263467	CTCCCATGATCATAACCAGAG		59	2263507	2263525	AAAGTTTCCATAGTCGCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33791	FBgn0035240	FBtr0091792,FBtr0091794,FBtr0091795,FBtr0091793	2	4	4	82	3L	1606830	1606848	CAATGGTGTCAAGCTACGA		59	1606891	1606971	CCAAGAGGAATACTTTATGGTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG7864	FBgn0035233	FBtr0072743	1	1	1	89	3L	1559024	1559042	AATAACCTTCAGACCCTCG		58	1559094	1559167	CAGTTGTAACAATCTGCTGG		59	NA	
Drosophila melanogaster	50	CG32320	FBgn0052320	FBtr0113433	1	1	1	84	3L	1400094	1400114	CAGTACTATCAGATCATGGGT		58	1400157	1400230	GTCTCATTGAGCTTATCTTCAC		58	NA	
Drosophila melanogaster	50	CR30066	FBgn0050066	FBtr0087563	1	1	1	60	2R	10177958	10177978	ACTAGATGGTGATTGTCAAGG		59	10177918	10177938	GAAACCAGATTCCAGTTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33228	FBgn0053228	FBtr0072331	3	1	1	148	2R	20556186	20556260	AATACGTGGCTGTCTATGG		59	20556056	20556074	AACCAGAAGCATTGAGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4612	FBgn0035016	FBtr0072346	3	1	1	226	2R	20412375	20412396	GCACTTCAAGAATCTGTATGTG		59	20411939	20411958	CGTACAAGAACTTGTTGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30419	FBgn0050419	FBtr0072275	1	1	1	70	2R	20103103	20116616	GGCAATTCCAACAAGATACTG		59	20103053	20103071	GTCCAGTAACTGGATGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30194	FBgn0050194	FBtr0071954,FBtr0071955,FBtr0071956	3	3	3	120	2R	18947456	18947474	TGGTCTACATCTACACGTC		58	18947617	18947635	ACATCCTGATCCTTGAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32833	FBgn0052833	FBtr0071990	3	1	1	60	2R	18872624	18872644	GAGCGATATACAAACTGAGTC		58	18872584	18872602	TTCAGGAATCCATCCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30187	FBgn0050187	FBtr0071997	2	1	1	81	2R	18804779	18805211	GAGGCACTTATTCTAGACCA		58	18804717	18804735	TAGTTCCATTATCGGGAGC		58	NA	
Drosophila melanogaster	50	CG13531	FBgn0034786	FBtr0071910	1	1	1	80	2R	18738535	18738606	GAAATCTTTCATCCGGACTG		58	18738474	18738493	ATCACTAAAGTCTTCCTGGT		57	NA	
Drosophila melanogaster	50	CG30268	FBgn0050268	FBtr0071877	1	1	1	80	2R	18601079	18601151	TCATAATTGCTGAGTTCGAG		57	18601193	18601212	TATCAAGGGACTGAGATAGC		57	NA	
Drosophila melanogaster	50	mRpS29	FBgn0034727	FBtr0071842	1	1	1	60	2R	18306708	18306726	GACACTGGATCAACAAGAC		58	18306666	18306685	TTGTTGCTCATGAACTTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr58b	FBgn0041238	FBtr0071732	1	1	1	60	2R	17866005	17866025	TGCCTTAGTTATATTGGCTCC		59	17865965	17865983	TCAAATCGAACTGCATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34396	FBgn0085425	FBtr0112645	3	1	2	120	2R	16987563	16987730	AACTATAGGTTACGGCCAC		58	16987814	16987832	GAATAACTTGCCCAGATCG		58	NA	
Drosophila melanogaster	50	CG15226	FBgn0034550	FBtr0071564	1	1	1	197	2R	16677364	16677382	AGGATCTCCCACAATTTCG		59	16676648	16677203	AAGACCAATCCAATGGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15083	FBgn0034399	FBtr0086618	2	1	1	76	2R	14723835	14723922	TTGATAGGAACCCTGAAGGA		59	14723961	14723979	AAGGAGATGGCTTCAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15086	FBgn0034374	FBtr0086651,FBtr0086649,FBtr0086650,FBtr0086648	3	4	4	108	2R	14567578	14567653	CCTTACTACCAACGAGATGG		59	14567489	14567510	GGGATTCTAATTTCTGGTTGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30118	FBgn0050118	FBtr0086724,FBtr0113360,FBtr0113361	1	3	3	80	2R	14319246	14319326	CTGAAATATTTGGTGGCCC		58	14319184	14319205	CAGATAATGATGTACGACATCG		58	NA	
Drosophila melanogaster	50	GstE3	FBgn0063497	FBtr0086671	1	1	1	60	2R	14288352	14288373	TACAAGATCGTCAATCTGATGG		59	14288392	14288412	GATTGATCTTGAGGAACTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6459	FBgn0034259	FBtr0086892	1	1	1	91	2R	13559432	13559450	AGGTGGACATCATAAAGGG		58	13559301	13559377	GAAGACATCGTTGTACTCG		57	NA	
Drosophila melanogaster	50	qkr54B	FBgn0022987	FBtr0086925,FBtr0086923,FBtr0086924	3	3	3	96	2R	13358304	13358323	AAAGCCAATGAGTACATACG		57	13358382	13358455	TTTCTATCTCGCCTTCCAG		58	NA	
Drosophila melanogaster	50	CG30321	FBgn0050321	FBtr0087286	3	1	1	78	2R	11680856	11680875	GAAATGGATGAAGTGGAACG		59	11680916	11680934	TTTCTATTCCACTCGTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8613	FBgn0033924	FBtr0087546	3	1	1	82	2R	10241976	10242051	AAGAATGCATCGCAAATCG		59	10242095	10242115	AGTGTAGCTTTGTAGTAGTCC		58	NA	
Drosophila melanogaster	50	CG6553	FBgn0033880	FBtr0087642	2	1	1	61	2R	9742518	9742536	AGAACCAGAACATTTGCCA		59	9742419	9742493	GGGTGTTTCACAGTAAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13339	FBgn0033871	FBtr0087632	3	1	1	141	2R	9712658	9712729	GAAAGTTGGACAATTGGGC		59	9712833	9712852	AACTATGTTGAGGATGTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Egm	FBgn0086712	FBtr0088090	2	1	1	235	2R	7505191	7505209	AAGTACTTTACCCTGCGAC		59	7504913	7504933	TTGAAGAGTGGATTTCTGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18011	FBgn0033491	FBtr0088332	1	1	1	80	2R	6030782	6030800	AAAGCGATGATGACATCGA		59	6030841	6030922	CTTCATCCTTCTCTTTGATGTC		58	NA	
Drosophila melanogaster	50	CG1671	FBgn0033454	FBtr0088373	2	1	1	60	2R	5736481	5736499	GGACAACTGATAATCGTGG		57	5736523	5736541	AAGATTTAGGGTCGACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	brp	FBgn0086376	FBtr0111001,FBtr0113488	2	2	2	238	2R	5424009	5424027	TGGAGAAGTCCCTACAGAC		59	5424438	5424530	GATCTTTAAGGCTTGTTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	Rme-8	FBgn0015477	FBtr0088618	2	1	1	80	2R	5062483	5062501	CTTTCACGCTCTTACTCGT		59	5062366	5062439	ATAATCTCACGAAAGCCCG		59	NA	
Drosophila melanogaster	50	pdm3	FBgn0033288	FBtr0114491,FBtr0088741	1	2	2	140	2R	4282117	4282546	CAGAACATGTTCGAGAAGC		58	4282745	4282764	GATATAGTCGGTTAGGTGGT		57	NA	
Drosophila melanogaster	50	CG30369	FBgn0050369	FBtr0088795	2	1	1	130	2R	4146973	4146991	GTTTGCATCAAAGGAGGAC		59	4147085	4147103	AGAATCCAGATGATGGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gapdh1	FBgn0001091	FBtr0100479,FBtr0088903	1	2	2	61	2R	3679711	3679729	GCTGAACGATAAGTTCGTC		58	3679668	3679686	GGTTGGAGTAACCGAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	EcR	FBgn0000546	FBtr0086012,FBtr0086011,FBtr0086008,FBtr0086010,FBtr0086009	2	5	5	80	2R	1981446	1981524	GCGTATAATGAGTCAACCC		57	1981384	1981403	GTGAGTATGGTTATCTCGGT		58	NA	
Drosophila melanogaster	50	CG7849	FBgn0033060	FBtr0085976	1	1	2	60	2R	1964594	1964929	GAGCAACATTTGCAAGGTC		59	1964952	1964971	CCGAATAGAACTAGACTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Act42A	FBgn0000043	FBtr0086029	3	1	1	60	2R	1902738	1902756	AAAGGACTCTTATGTCGGC		59	1902696	1902716	GTACTTCAGGGTAAGGATACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR33987	FBgn0053987	FBtr0100032	1	1	1	60	2L	22019824	22019842	TTCAACACGAAACTGTCAC		58	22019863	22019884	CGTTCACTGAATAAATTCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33801	FBgn0053801	FBtr0091805	1	1	1	67	2L	21417288	21417306	TTTAAAGGAACATGGCGGT		59	21417336	21417355	CGCATTTATAAGTGGCAGTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31626	FBgn0051626	FBtr0081485,FBtr0081486	1	2	2	62	2L	21233482	21233635	GAAACTCTTCGTCTTCGCT		59	21233438	21233456	TTAAGGTGGGAAACATCGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Oseg5	FBgn0032891	FBtr0081451	3	1	1	88	2L	20833677	20833696	TACAGCATCTGGTATTGTCC		59	20833447	20833626	CCAAATTCCGTCGTATCCA		59	NA	
Drosophila melanogaster	50	CG9323	FBgn0032883	FBtr0081459	2	1	1	62	2L	20754742	20754818	AGTTGATCAAAGCCATCGA		59	20754698	20754716	AAATATAGTCCTCGCCGAG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG5705	FBgn0032486	FBtr0080444	3	1	1	60	2L	13221125	13221143	CACAACCTCAATGGTTTCC		58	13221165	13221185	GCAACTTCTCTATTAGTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5525	FBgn0032444	FBtr0080411	2	1	1	114	2L	12691494	12691575	CCAAGACCGATATGGATCAC		59	12691399	12691417	CCTGACTTCTTGATCTGCT		58	NA	
Drosophila melanogaster	50	CG14934	FBgn0032381	FBtr0080275	2	1	1	95	2L	11848827	11848916	GAGAACTGAAGAACGAGCA		59	11848972	11848993	GATTGGGCTGTTCTATAAAGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6201	FBgn0032343	FBtr0080229	3	1	1	120	2L	11111073	11111091	AAGGAACGCGATAATCTGG		59	11110913	11110992	TATAGAAACCATTGACGGATCC		59	NA	
Drosophila melanogaster	50	CG5343	FBgn0032248	FBtr0080044	1	1	1	60	2L	10430377	10430451	CTTCGAGGTTCAGGTTCTC		59	10430335	10430354	GTAGTTACTGGCCCTAAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13139	FBgn0032230	FBtr0080002	2	1	1	158	2L	10365532	10365550	ATCGCCCTAATGAATTCCG		59	10365671	10365780	CAGCATGAATCTGAATGCTC		59	NA	
Drosophila melanogaster	50	CG13127	FBgn0032176	FBtr0079933	2	1	1	60	2L	10027441	10027460	ACAAGTTGCTCAGAGATCAG		59	10027482	10027501	TCTTCCAAGTTATCATCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13126	FBgn0032168	FBtr0079892	3	1	1	144	2L	9952873	9952891	CAATCCGATAGCTCAAGCT		59	9952688	9952765	AATAGGCAGACTTTCCGTG		59	NA	
Drosophila melanogaster	50	Cpr30F	FBgn0051876	FBtr0079897	2	1	1	146	2L	9932879	9932897	ACTACGATTTCGCCTACTC		58	9932751	9932769	CATCCGAAGTGTAGTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4036	FBgn0032149	FBtr0079870	3	1	1	62	2L	9791682	9791760	TACCTATGCCAAACCTCTC		58	9791786	9791804	AATGCTCAAACTGGTACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fu2	FBgn0029173	FBtr0079674	3	1	1	63	2L	8464622	8464640	GATATCAGCATGACCCAGG		59	8464667	8464685	GATCCGTATTATGGTGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Akap200	FBgn0027932	FBtr0079666,FBtr0079665	2	2	4	70	2L	8428059	8430290	CAAATTGAGGTGGATCTCG		58	8430324	8430342	TCCTGTGTTGTAACGTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13784	FBgn0031897	FBtr0110799	3	1	2	81	2L	7208574	7209361	CACTATCTCAATGACCTGGAC		59	7208513	7208531	ACACGACTAGCATGAAGTC		59	NA	
Drosophila melanogaster	50	CG13982	FBgn0031811	FBtr0079256	1	1	1	171	2L	6413222	6413240	ATCTCTTATCGAGGACCAC		57	6413431	6413449	TTCTGCATTTGAATGTCCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9098	FBgn0031762	FBtr0079228	3	1	2	81	2L	6011719	6011793	GAATCTGGAAGCAATGAGC		58	6011656	6011674	ATTCTCACCCAGATACACC		58	NA	
Drosophila melanogaster	50	ifc	FBgn0001941	FBtr0079179	3	1	1	147	2L	5986883	5987624	AACATCACCGTTACCAAGG		59	5987734	5987753	GGGTTAATAATCAGTGGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8885	FBgn0031656	FBtr0079052	3	1	1	142	2L	4968553	4968571	ATTAGTTGATTCGCAGGGA		58	4968366	4968447	TTTCAACTTCATCGACGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2837	FBgn0031646	FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403	1	4	4	164	2L	4904902	4904923	GTTTACTCCAATATACCACCGA		59	4904700	4904721	CTTGTTGAACGATTGATCATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	ine	FBgn0011603	FBtr0077447,FBtr0077448,FBtr0077446,FBtr0077449	2	4	4	107	2L	4468743	4468761	GAAGACTGTCGAAGAACGT		59	4468589	4468672	ATACCCAGATGGCAAAGAG		59	NA	
Drosophila melanogaster	50	Psf2	FBgn0031599	FBtr0077461	2	1	1	86	2L	4386822	4386840	AAGTGCCGAATTGTACCTC		59	4386696	4386772	GGTAAAGAACTTTGAGCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16712	FBgn0031561	FBtr0077546	3	1	1	93	2L	3696458	3696536	GGATCCTATCTGTGGACTG		58	3696383	3696401	GGTTTCGGGATGATAACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	oaf	FBgn0011818	FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780	1	4	4	103	2L	2495396	2495415	GTATTACCTCCAACATTGGC		58	2495481	2495581	GATTTGAACCTCATTGCGA		58	NA	
Drosophila melanogaster	50	CG15387	FBgn0031403	FBtr0113015,FBtr0077841	3	2	2	61	2L	2226104	2226124	AACTCGAAGAAACTCTCAGAG		59	2226063	2226082	TGCATCATGAGAATCATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me28S-C3351	FBgn0086069	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:K2:42Ec	FBgn0011894	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG14584	FBgn0031181	FBtr0077213	3	1	1	60	X	21348454	21348475	AGCTTCTACGATATGATCAAGG		59	21348415	21348434	TCTCCAGATCGCTATAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pbprp2	FBgn0011280	FBtr0077303,FBtr0077304	3	2	2	185	X	20291523	20291615	CTGCAGATAATGGATGAATCC		58	20291826	20291844	CTCGTAAATGCATTCCTCG		58	NA	
Drosophila melanogaster	50	D2R	FBgn0053517	FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461	1	4	5	80	X	19905587	19920746	TACTTTCTGGTAAATGGAGC		57	19905526	19905545	AGTAGAGCATATCACATCCA		57	NA	
Drosophila melanogaster	50	CG14207	FBgn0031037	FBtr0074733,FBtr0074734	1	2	2	94	X	19504475	19504493	ATTAGCTCACCCTTGATCC		58	19504616	19504634	TTCACAACAATTTCCTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Arpc3B	FBgn0065032	FBtr0113478,FBtr0074410	1	2	2	60	X	16999584	16999602	CCCACTGTTGATATTCCCA		58	16999542	16999563	TGTTCGATTTCCAGAAGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Chc	FBgn0000319	FBtr0112798,FBtr0074180,FBtr0112797,FBtr0074182,FBtr0074181,FBtr0074179	3	6	6	95	X	15722670	15722757	CTTTATCAGTGTTACGACTTGC		59	15722596	15722615	CTGAATCAAATAGGGCATGG		58	NA	
Drosophila melanogaster	50	Lsp1alpha	FBgn0002562	FBtr0073651	1	1	1	60	X	12385039	12385057	TGAAGACTAGCCTGTACGA		59	12385079	12385099	GAGAAAGTTGGAATCTTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15245	FBgn0040936	FBtr0071400	1	1	1	61	X	9762386	9762404	ATGATCTTGGCCCAAAGTC		59	9762343	9762362	TGCGGATTGTAGAAGATCAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4617	FBgn0029936	FBtr0071019	2	1	1	171	X	6997968	6997986	GTCAGAGTCTTTACATGCG		58	6997753	6997833	CTGGTGAAGTCTAGATCCT		57	NA	
Drosophila melanogaster	50	CG5928	FBgn0029836	FBtr0100295,FBtr0070871	3	2	2	81	X	5962703	5963094	ACACCTTTATTCAGAAGCC		57	5963139	5963157	TTGCCTCCTATGATATCCA		57	NA	
Drosophila melanogaster	50	MAPk-Ak2	FBgn0013987	FBtr0070837,FBtr0070838,FBtr0070839	3	3	3	95	X	5654849	5655216	GTAGACTACGATCAGATGCA		58	5654773	5654792	GTATAACTCCATCTCCTCGA		57	NA	
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070765,FBtr0070767,FBtr0070769,FBtr0070766	3	7	7	81	X	5270146	5270164	GGAACAGATCTCATCTGGA		58	5270207	5272344	TTCCATATACCTAGGGTAGTC		57	NA	
Drosophila melanogaster	50	CG4293	FBgn0024983	FBtr0100475,FBtr0070090,FBtr0070089,FBtr0100476	1	4	4	158	X	422615	422633	TTTCACCACCATATACGCT		58	422414	422432	AAGGTTACTAGGTGATCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1910	FBgn0022349	FBtr0085839,FBtr0085840,FBtr0085838,FBtr0085841	2	4	4	87	3R	27576299	27576375	AATGTAAATGGTGAGCCCA		59	27576425	27576444	TGGGATTGGTTTAGTTACAC		57	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG7866	FBgn0039725	FBtr0085504,FBtr0110889	2	2	2	259	3R	25759564	25759582	TTTCCACATAGTGGAGCAC		59	25759805	25759972	ATCGCTGGCATTAAATTGC		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085144,FBtr0085137,FBtr0085138,FBtr0085145,FBtr0085140,FBtr0085143,FBtr0085139	1	7	12	133	3R	22892191	22892337	ATCGGATACCTTTGTCTTCC		59	22892077	22892095	AGTTTCTAAGGTGTTGGCT		58	NA	
Drosophila melanogaster	50	ms(3)K81	FBgn0002838	FBtr0085063	2	1	1	60	3R	22702055	22702074	CAATTCTTCCGACGATACAC		58	22702097	22702115	CAAACTCAGATTCGAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0084683,FBtr0100635,FBtr0084685	2	3	17	92	3R	20521092	20521110	AGGACATTAAGGACGAGAC		58	20521838	20527818	GGTGTTCATCTAAGTCATCG		58	NA	
Drosophila melanogaster	50	CG31203	FBgn0051203	FBtr0083926,FBtr0083924,FBtr0083923,FBtr0083925,FBtr0083927	3	5	5	87	3R	16575021	16575039	GATGGAATTACGGAAAGCC		58	16575089	16575200	GGAACATAACCCTAAACACG		58	NA	
Drosophila melanogaster	50	CG17836	FBgn0038661	FBtr0083701,FBtr0113246,FBtr0083702,FBtr0083703,FBtr0083700	2	5	5	92	3R	14751507	14751633	AATGATGATCGGTTCGAGG		59	14751689	14751707	CTCTACGATGTCTGCATGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14305	FBgn0038630	FBtr0083634,FBtr0083636,FBtr0083635	2	3	3	60	3R	14425300	14425318	GTGGACGACCATATGATCC		59	14425342	14425360	ATGAACAGAATGACTCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ald	FBgn0000063	FBtr0083478	1	1	1	80	3R	13499183	13499302	CATCATGCTGGTTCATATGG		58	13499345	13499363	TACTGTAGTAGTTCGGTGC		58	NA	
Drosophila melanogaster	50	CG31088	FBgn0051088	FBtr0083241	1	1	1	79	3R	11776229	11776247	CAATGCCATTAACTCGCAC		59	11776115	11776133	AATAAGACCCTGAAGCTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9611	FBgn0028487	FBtr0082846,FBtr0112939,FBtr0082847	2	3	5	158	3R	9522676	9522694	AAGACTCTGCACGATAGAG		58	9522056	9522556	TCGTAGTTTGTATCTATCCGG		58	NA	
Drosophila melanogaster	50	CG6783	FBgn0037913	FBtr0100321,FBtr0100320	2	2	3	254	3R	7390345	7390364	ATACCTACACCCTGACTACC		59	7390042	7390060	CTTAGACGGCCTTGTAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31373	FBgn0051373	FBtr0082318	3	1	1	67	3R	6534907	6534925	GTTACGTCACTACGATTGC		58	6534858	6534876	TAACGATAATACGCAGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi2	FBgn0037410	FBtr0078592,FBtr0078593	2	2	2	149	3R	2037522	2037818	CAAGGACCAGTACAAGCTC		59	2037931	2037949	CGGAGTCCATATTTCAGCA		59	NA	
Drosophila melanogaster	50	Os-E	FBgn0010403	FBtr0078655	1	1	1	60	3R	1802263	1802332	AACTGGCGTTACTGATGAG		59	1802221	1802239	CTCGTCCTCATGAATTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32425	FBgn0052425	FBtr0078205,FBtr0078202,FBtr0078203	2	3	5	165	3L	20505332	20505350	CATCATCAATGATGAGCGC		59	20505479	20505632	GATCACTGGTAGCTTTCCC		59	NA	
Drosophila melanogaster	50	rdgC	FBgn0004366	FBtr0074834,FBtr0074833,FBtr0074835	3	3	4	125	3L	20253973	20253993	GCAATCTTCATCCAGAAATGG		59	20254080	20254321	TTTGTATAGCTCAGCCTGG		59	NA	
Drosophila melanogaster	50	CG32199	FBgn0052199	FBtr0075106	2	1	1	103	3L	18605854	18605942	CTGAAAGAATCCCTAAATTCGG		59	18606006	18606024	TTGTCGTAGTTGTCTTCCC		59	NA	
Drosophila melanogaster	50	CG34253	FBgn0085282	FBtr0112447	2	1	1	60	3L	18079885	18079903	ACTTGGAAGACCAATCCAG		59	18079843	18079863	CATCACCCATGTAGATTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4169	FBgn0036642	FBtr0075309	2	1	1	79	3L	16578861	16578879	GATAAGGATGTGGCCAGAG		59	16578922	16578940	TTAATTAGACCACCGTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdh	FBgn0011693	FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536	1	4	4	130	3L	16346821	16346839	ATCATTCCCGTTTACGGAG		59	16346645	16346663	ATGTCCGTCATTGTAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hsc70-1	FBgn0001216	FBtr0075761	2	1	3	107	3L	13967867	13968826	CGATCTTTGTCTCAGGGTC		59	13968895	13968915	GGGATATTATGTGGCATTGTG		59	NA	InUTR
Drosophila melanogaster	50	CG16719	FBgn0036029	FBtr0076394	3	1	1	60	3L	9678958	9678976	TACATCAATTCCATTGCCG		58	9678999	9679018	CATTCTTGAGGGCAATTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11537	FBgn0035400	FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117	2	5	5	80	3L	3130292	3130310	GGTCTCGGTCTTTATAGCC		59	3130170	3130248	CCAAACACTTGCATGAAGG		59	NA	
Drosophila melanogaster	50	Ptpmeg	FBgn0035133	FBtr0072543	3	1	4	133	3L	328343	352690	CGTCATGTGTTTCTATCTGC		59	352849	352870	GGTGTTCTAATGCGTTAAAGTC		59	NA	
Drosophila melanogaster	50	Mov34	FBgn0002787	FBtr0072290	1	1	1	60	2R	20291455	20291473	AACCACCAGATTGTCTACC		58	20291497	20291515	CATTGGTTATATCGGGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3065	FBgn0034946	FBtr0072153,FBtr0072155,FBtr0072154	1	3	3	60	2R	19859012	19859033	CAAGCCGATAAAGATTAAGCTG		59	19859052	19859072	AGATACGATCTGGTACTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pita	FBgn0034878	FBtr0072112	3	1	2	156	2R	19437598	19437616	AGTTCATCTGCGTGTACTG		59	19437404	19437478	GAGTGGACTGTCTCATGAC		59	NA	
Drosophila melanogaster	50	ventrally-expressed-protein-D	FBgn0053200	FBtr0071826	3	1	1	71	2R	18296420	18296439	CTAAGATTACAAGCCCAGGA		58	18296471	18296491	CCAGAACTTCTTCCTTATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gp150	FBgn0013272	FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815	2	4	4	82	2R	18213224	18213297	AAGTCCAAGAGCAAATCCA		59	18213341	18213361	TCGTCGTAGTCATATTGAGAG		58	NA	
Drosophila melanogaster	50	CG30280	FBgn0050280	FBtr0071759	2	1	1	103	2R	18001831	18001849	TCTCCACATATGATCGGGA		59	18001915	18001996	ATTAAGGTTGCTGTCCAGAC		59	NA	
Drosophila melanogaster	50	CG17974	FBgn0034624	FBtr0071611	3	1	1	86	2R	17236801	17236879	CCCATATTTGAGGACTACGG		59	17236734	17236755	ACGAGTAAATCTCATGATGGAG		59	NA	
Drosophila melanogaster	50	mago	FBgn0002736	FBtr0071569	3	1	1	63	2R	17016322	17016340	AAGAACGACACCATGATCC		59	17016367	17016385	GCTTCAGTTCTTCCATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34199	FBgn0085228	FBtr0112392	1	1	1	60	2R	16175679	16175697	CTCAGTTGACTTACTCCAC		57	16175720	16175739	TGTCTGTTGTATCGATACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	POSH	FBgn0040294	FBtr0086828	1	1	1	173	2R	13458662	13458747	TACATGTAAGATCCGGCTC		58	13458884	13458902	GTTCCTTGCTTCCTTTCAC		58	NA	
Drosophila melanogaster	50	scb	FBgn0003328	FBtr0087370,FBtr0087369	3	2	2	112	2R	11144951	11144970	TATCCAAACATCAGGAGACG		59	11145042	11145127	GAAGAAGCCAAACTTGTATAGC		59	NA	
Drosophila melanogaster	50	CG10249	FBgn0027596	FBtr0087429,FBtr0112929	3	2	4	124	2R	10793454	10797742	CTTTGATGTGGCAGATTCC		58	10793348	10793366	TTTCATATTGGACCTCCGC		59	NA	
Drosophila melanogaster	50	CG18371	FBgn0033893	FBtr0087599	3	1	1	72	2R	9916435	9916453	GGCTACTGAATATCGGCAG		59	9916489	9916507	GAAGTGATCTCCTTGGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17059	FBgn0040754	FBtr0087739	3	1	1	143	2R	9107892	9107910	AACATGAAACCGTCTCTGG		59	9108327	9108345	ATTGTAGAAGTCAGCGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18004	FBgn0033566	FBtr0089729,FBtr0089728	3	2	3	82	2R	6773587	6773605	CTATTGAGTCCGGAATGCA		59	6773648	6773727	TCATTGGGATAACACTTAGAGG		59	NA	
Drosophila melanogaster	50	Mmp2	FBgn0033438	FBtr0088501,FBtr0088500	1	2	2	111	2R	5500119	5500206	TGTGTTCTTCATAGGTCGC		59	5500026	5500044	ATCGATGTGGGTCAAAGTG		59	NA	
Drosophila melanogaster	50	RpL31	FBgn0025286	FBtr0088526,FBtr0088525	3	2	3	114	2R	5475178	5475196	GTCTGAACAAGCACATCTG		58	5475344	5475362	TAAGTGTACAGCTTGTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Rme-8	FBgn0015477	FBtr0088618	3	1	1	80	2R	5057396	5057414	GGAAATTCAATGCATCGGA		58	5057278	5057353	TTGACAGTAGAGTTATCCGG		58	NA	
Drosophila melanogaster	50	CG13744	FBgn0033363	FBtr0088666	3	1	1	186	2R	4902866	4902887	CAGATAAATGTCGAGATCAAGG		58	4902064	4902145	CGTTATGATAAATTCCTGGCTG		59	NA	
Drosophila melanogaster	50	l(2)01289	FBgn0010482	FBtr0086137,FBtr0110901	1	2	4	80	2R	2611283	2611353	TATTCGAGGGCGAATTGAG		59	2611221	2611240	TCAGCTCAATACGATCTTCG		59	NA	
Drosophila melanogaster	50	gus	FBgn0026238	FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753	3	6	6	101	2R	1005301	1008279	GTGGATTAGATCCCGAACC		59	1005218	1005236	GAAGCTGTTGAATGTGCTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG17082	FBgn0039994	FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289	1	6	6	87	2R	637011	642015	TTGAACAAGGGTTAGAGGT		58	642066	642084	AGTTGTACAATCGCTTCAG		57	NA	
Drosophila melanogaster	50	CG10702	FBgn0032752	FBtr0081175,FBtr0081176,FBtr0081174	1	3	3	80	2L	19067507	19067579	AAGGACAAGTACGTCATGG		59	19067445	19067463	GGAAATAACATAGCCGTGC		58	NA	
Drosophila melanogaster	50	CG15134	FBgn0032621	FBtr0080949,FBtr0114502	3	2	2	84	2L	16904394	16904471	TAAGACAGGGAATCATTGTG		57	16904517	16904536	TTGTTCTTGTACTGATGCTC		57	NA	
Drosophila melanogaster	50	pkaap	FBgn0040079	FBtr0080826	3	1	1	60	2L	16290159	16290179	CACATCTTCGATAACTACGTG		58	16290199	16290288	GATGAGTGGTGGAATTATCTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG4793	FBgn0028514	FBtr0080793	2	1	2	111	2L	15924628	15924647	CGTATATCAAACTGGTGGTG		58	15924721	15926477	GCTAATAATGGTGCCTTCG		58	NA	
Drosophila melanogaster	50	CG34160	FBgn0085189	FBtr0112351	2	1	1	73	2L	10580080	10580098	ATAGACGATTATTGTGCCG		57	10580135	10580153	TAGATTTCTAGCCCTTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	capu	FBgn0000256	FBtr0077511,FBtr0077513,FBtr0077512,FBtr0077510	1	4	4	85	2L	3879058	3884044	AGTTCGAAGGTCAAATGCT		59	3878991	3879009	TTCCTGATTAGCATCACCG		59	NA	
Drosophila melanogaster	50	Uch	FBgn0010288	FBtr0077844	1	1	1	80	2L	2213667	2213686	AAGATGACACCTTGGAATGG		59	2213548	2213624	GCTTCTCATAGGTTTCGCT		59	NA	
Drosophila melanogaster	50	aru	FBgn0029095	FBtr0078033,FBtr0078031,FBtr0078032	1	3	3	87	2L	862623	862641	TAAGATTGTGCTGGTCACC		59	862490	862575	ATCAAGGATCTCCAAGTATTCG		59	NA	
Drosophila melanogaster	50	CG9066	FBgn0030703	FBtr0074166	2	1	1	138	X	15782301	15782395	TGGGAAATGCAGTTTAAGGA		59	15782182	15782200	ACTTGGGTAGGTTCTTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	toy	FBgn0019650	FBtr0089185	1	1	1	83	4	1026627	1026703	CAAACACAGGTGTCATTTCTG		59	1026748	1026766	AATTGCTTCCCGTTAGGTC		59	NA	
Drosophila melanogaster	50	CG2191	FBgn0039873	FBtr0085860	3	1	1	92	3R	27586673	27586694	GACCTTCATCTTCATATTGACG		58	27586543	27586620	ACATTAAATCCGGTCACCT		58	NA	
Drosophila melanogaster	50	PH4alphaPV	FBgn0051015	FBtr0085670	1	1	1	80	3R	26473289	26473381	TGTTAAAGCTTAACCAGCAC		58	26473228	26473246	ACAGTTTAATATCGTGCGG		57	NA	
Drosophila melanogaster	50	CG15529	FBgn0039748	FBtr0085567	2	1	1	146	3R	25977971	25977989	CCTGATGGAAGTCAGATCG		59	25978098	25978365	TCCACAATGACGTAATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2010	FBgn0039667	FBtr0085428,FBtr0085427	1	2	2	119	3R	25323843	25323862	TAAGTTTATACAGCGCCAGG		59	25323944	25324030	ACAATGATCTTGCAGTTGC		59	NA	Nonspecific
Drosophila melanogaster	50	dys	FBgn0039411	FBtr0113293,FBtr0113294	1	2	3	81	3R	21914065	21921925	CGGCATGTTTACAAGATTCG		59	21914003	21914024	TATCTCCGCATTTATGAGATCG		59	NA	
Drosophila melanogaster	50	KaiRIA	FBgn0028422	FBtr0083938	1	1	1	80	3R	16477312	16477389	CTATGAATCTGCTGAGTACC		57	16477251	16477270	ATCACTTTGATAACAGGTCC		57	NA	
Drosophila melanogaster	50	l(3)05822	FBgn0010877	FBtr0083596,FBtr0083595	2	2	2	64	3R	14115517	14115535	TGTTTGTATCACTTCCCGG		59	14115413	14115490	GTAACCAATTCGTTCTCCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	MESK4	FBgn0043069	FBtr0083367	1	1	1	84	3R	12815101	12815119	ACACTTTAATCCTGGACCG		59	12815166	12815249	TTGTTGATCCACAAGATCCT		58	NA	Nonspecific
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083265,FBtr0083261,FBtr0100333,FBtr0083263	3	7	8	116	3R	12125399	12126972	TGGTTCAGTACAGGTTGTG		59	12127052	12127070	GTTTCATCGACCACTTCGA		59	NA	
Drosophila melanogaster	50	CG8927	FBgn0038405	FBtr0100110,FBtr0083254	3	2	2	150	3R	12010826	12010844	GAATACCATACTTCCAGCG		57	12010958	12010976	CTGGAACTGTGATTGTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6974	FBgn0038285	FBtr0083042	1	1	1	60	3R	10904856	10904874	AAACCCGAAATGCATTGAC		59	10904814	10904835	CGGTACAATATCTTATTGCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kif19A	FBgn0038205	FBtr0082912,FBtr0082911	2	2	2	80	3R	9939295	9939315	GCATATGATTATCTCCCACTG		58	9939173	9939254	CCTTCTGATTCAATGTCGTC		58	NA	
Drosophila melanogaster	50	CG14375	FBgn0038147	FBtr0082762	3	1	1	60	3R	9215470	9215777	AATCATGGTTTAACCGACCT		59	9215429	9215449	AAGGGATAATCAAGTTCACCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG17100	FBgn0037813	FBtr0082246	2	1	1	145	3R	6215140	6215159	CATCCGGTCAAGTATGAGAG		59	6222525	6223086	TGCCTCGATGTCTTATTACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9839	FBgn0037633	FBtr0081934	1	1	1	97	3R	4630978	4630996	GGAATTGGAACAGCAAGAG		58	4630834	4630917	AGTCATCCATATCGTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR34262	FBgn0085291	FBtr0112457	1	1	1	103	3L	21953026	21953044	GATCTTTCCCACAAACGTG		59	21953111	21953190	AATACTTGGCCAGTAGAGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG32442	FBgn0052442	FBtr0089798	2	1	2	190	3L	21521996	21522073	ACTTTAAGCTCTACTGGAAGG		59	21521761	21521779	AGTGGCGGTGATTATTAGC		59	NA	
Drosophila melanogaster	50	CG14127	FBgn0036219	FBtr0076037	3	1	1	144	3L	11875821	11875893	AGAGCGAAGTAAATCAAGAGG		59	11875999	11876017	AAGATCATCTCGCAGATGC		59	NA	
Drosophila melanogaster	50	CG10543	FBgn0034570	FBtr0071524,FBtr0071523,FBtr0071525	3	3	3	140	2R	16891581	16891599	CTGCAACTATTGCGATCAG		58	16891759	16891844	AAGCTACCCATATCTTCTTCG		59	NA	
Drosophila melanogaster	50	Aats-cys	FBgn0027091	FBtr0087234	1	1	1	80	2R	12032151	12032172	GGAAGGATACTCTTGACTACTC		59	12032212	12032290	TCAGGAAGAACTCATTGAGG		59	NA	
Drosophila melanogaster	50	CG8187	FBgn0034027	FBtr0087355	1	1	1	97	2R	11428032	11428050	GTTTCAGACACAAACTGGG		58	11427900	11427975	GTACTCCAGTCATATTGAGATCC		59	NA	
Drosophila melanogaster	50	CG8791	FBgn0033234	FBtr0088849	3	1	1	162	2R	3816168	3816186	AGGGTTGTTCTACCTTTCC		58	3816312	3816392	CACAGGCATAGACTGACTG		59	NA	
Drosophila melanogaster	50	Spf45	FBgn0086683	FBtr0111239,FBtr0111241,FBtr0111240	3	3	3	102	2L	22959943	22959962	AATCATTCACGAATCGTTCG		59	22959799	22959878	ATTAAGGTCCACTACAGCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Stam	FBgn0027363	FBtr0080143	3	1	1	135	2L	10860804	10860822	CACTTCTGCTCCATCTCAG		59	10860987	10861005	AGTGGGTTGAGTCAAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	yip2	FBgn0040064	FBtr0079876	3	1	1	200	2L	9916798	9916819	GAAACTGGAGGATATTGATCTG		58	9916980	9917057	TACTTTAGCTTCTTGCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	tRNA:V3b:84Db	FBgn0011999	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-G2173	FBgn0086028	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30299	FBgn0050299	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:R2:42Ab	FBgn0011956	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	su(f)	FBgn0003559	FBtr0113732,FBtr0113733,FBtr0113734	2	3	5	278	XHet	78860	79327	GATATGCTGAGAATGTGGG		57	79569	79587	ATAGTAGCTCTACGCTGAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CR32745	FBgn0052745	FBtr0070932	3	1	1	201	X	6174555	6174573	CATTGCGATGAGACATACG		58	6174323	6174341	ATTATGGAATTCCACGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	roX2	FBgn0019660	FBtr0073515	1	1	2	60	X	11473567	11473586	TACGTTACTTCCGAGATCCT		59	11473609	11473627	TACACTGGTTGGATTTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41483	FBgn0084043	FBtr0111178	2	1	1	97	X	22048784	22048802	TTTACAGATCCTTCGAGCG		59	22045002	22048725	GGTAATAATCAAGCTCAGCTG		58	NA	
Drosophila melanogaster	50	DIP1	FBgn0024807	FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370	1	4	4	170	X	21497272	21497350	TTCTTTGCATTATGCGTCC		58	21497120	21497138	GAGAGTTGCACACTTTCAC		58	NA	Nonspecific
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089405	1	1	13	115	X	20105932	20105950	TAAGCGTCTACAATGTGCA		59	20101678	20105853	ATCAAATGCAAGCACATCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG32529	FBgn0052529	FBtr0100839,FBtr0074800,FBtr0074801	2	3	3	81	X	19795510	19795910	GACCGTATATGGAATATCCACC		59	19795952	19795970	ATATGAGGCCCAGTATGGA		59	NA	
Drosophila melanogaster	50	CG18809	FBgn0042132	FBtr0074811	2	1	2	89	X	19637537	19637555	TGATAACGTAACGTAGCCG		59	19636915	19637485	GTAGTGATGATTTGTTTGCG		57	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	Cdc42	FBgn0010341	FBtr0074751,FBtr0074752	2	2	2	64	X	19592047	19592066	GCTCATCTCGTATACAACCA		59	19592093	19592111	CATAGTTGTCGAACACCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14207	FBgn0031037	FBtr0074733,FBtr0074734	3	2	2	121	X	19504572	19504590	TAACAAAGTGCTGAAGCTG		58	19504747	19504765	TCTTTGTGTCCGACTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	betaCop	FBgn0008635	FBtr0074576	2	1	1	83	X	18276341	18276428	CTTCGGCAATATTGTTTACG		57	18276277	18276295	ATGTAGTCCATGATGTCGA		57	NA	Nonspecific
Drosophila melanogaster	50	CG32495	FBgn0052495	FBtr0089800,FBtr0089799,FBtr0089801	1	3	3	82	X	17798672	17798835	ATAAGCTGCACAATATGCC		58	17798881	17798899	CTTTGCATAGATGTCCCAC		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG32556	FBgn0052556	FBtr0074477,FBtr0074478	2	2	2	97	X	17569346	17569364	GTCGATTACCTGATGACCA		58	17568894	17568912	GGATAACTGGATGTGGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	mei-218	FBgn0002709	FBtr0100640,FBtr0100639	1	2	2	89	X	17033337	17033420	TCTAGATTGAGCCAAAGACG		59	17033267	17033285	AGGATTTGGTAGTTGCTCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12433	FBgn0030811	FBtr0074379	3	1	1	60	X	16916696	16916716	GACGATGATATCCATGATGGT		59	16916738	16916756	CCTCCTCTTCATAAGCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9992	FBgn0030744	FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309	2	5	5	94	X	16277004	16277023	TAGTCCTACTTCCGAGACTG		59	16276867	16276947	CAAAGTTGTGCAAGTCCTG		59	NA	
Drosophila melanogaster	50	CG3679	FBgn0027521	FBtr0074222	3	1	1	96	X	16198921	16198939	CTCTTGTCCGGATGATAGG		58	16198999	16199200	CTTTGTGCCTTGAAGTTCG		59	NA	
Drosophila melanogaster	50	vap	FBgn0003969	FBtr0074141,FBtr0074143,FBtr0074142,FBtr0074140	2	4	4	81	X	15894965	15894983	ACGATCTTTGGTCATGGTC		59	15894837	15894921	CTCCATGTATTGTTCCTTGC		58	NA	
Drosophila melanogaster	50	Lcch3	FBgn0010240	FBtr0074129,FBtr0074127,FBtr0074128	2	3	3	96	X	15821838	15821859	TGCCGTTAACTATACTTACTGG		59	15821915	15822000	GGATCTTTCACTCTTTCCGA		59	NA	
Drosophila melanogaster	50	CG8952	FBgn0030688	FBtr0074193	3	1	1	60	X	15660201	15660219	GGCAGGTCATACTGAAGAG		59	15660159	15660177	GATATGATCGATCCTCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8944	FBgn0030680	FBtr0074200	2	1	2	60	X	15638856	15638874	ACGATAAGATGTCCGATGC		59	15638814	15638834	CATAGGATCGAATTGAAAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8128	FBgn0030668	FBtr0074053	1	1	1	75	X	15592701	15592720	TTTACAAGAGCATACTCGTC		57	15592830	15592848	CAAATCGATCCGTAATGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	cngl	FBgn0029090	FBtr0089293	2	1	2	99	X	15284522	15284607	TGTTTATGCGAGGTGACTC		59	15284441	15284459	GCATGATGACGACTAGGAC		59	NA	
Drosophila melanogaster	50	CG33248	FBgn0053248	FBtr0073924	1	1	1	124	X	14127551	14127569	CTTTAACAAGCCGGAACTG		59	14127288	14127464	CAACTCTGACTTCGCTAGAG		59	NA	
Drosophila melanogaster	50	CG32627	FBgn0052627	FBtr0073814,FBtr0073815,FBtr0113441,FBtr0073813	2	4	4	114	X	13606925	13607018	CAAAGCCATGATTAGAAGACTG		59	13607093	13607111	GTTGCGTTTGTTCTCACAG		59	NA	
Drosophila melanogaster	50	CG15717	FBgn0030451	FBtr0073723	1	1	1	60	X	13023881	13023899	CATCTGGGAATCCTTTGCT		59	13023921	13023941	ATAGTGATAGTTCTTGGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hop	FBgn0004864	FBtr0073457	1	1	1	129	X	11258444	11258524	GTATCCAGATTCGATATCGCT		59	11258335	11258353	CATGAAATTGCCATCGCTC		59	NA	
Drosophila melanogaster	50	CG15211	FBgn0030234	FBtr0112977,FBtr0073376,FBtr0112975,FBtr0112976	2	4	4	187	X	10667187	10671999	AATTGTGGAGTTTGTGCTG		58	10672150	10672250	TCAGCTCCGAGAATATCCA		59	NA	
Drosophila melanogaster	50	CG1354	FBgn0030151	FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386	3	4	4	161	X	9674775	9674793	TCTGCTCAAGAACTTGGAC		59	9674918	9675202	AAGGCCTCAATATCATGGG		59	NA	
Drosophila melanogaster	50	His3.3B	FBgn0004828	FBtr0071345,FBtr0071347,FBtr0071346	2	3	3	218	X	9048446	9048464	GGATTTCAAGACCGATCTG		57	9048107	9048125	ACGACAGTGATCGAATCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12081	FBgn0030053	FBtr0071218	2	1	1	73	X	8483593	8483614	GCAATAGTATGTACATCTTCGG		58	8483648	8483666	ATTAAGGGAATGCACATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nek2	FBgn0029970	FBtr0071142	2	1	1	60	X	7785278	7785297	TGCAATACTACCATCATCTG		57	7785237	7785257	CACTCCATAACAATGTACACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100214,FBtr0100208,FBtr0100200,FBtr0100215,FBtr0100217,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100201,FBtr0100206	2	11	15	63	X	6979981	6981658	CCATCCGGAATGGATACAG		59	6979936	6979954	AATCATTGTAACCACGACG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	2	12	15	238	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978622	6978640	ATTGATCTACCTCTGTGCA		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	1	12	15	238	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978622	6978640	ATTGATCTACCTCTGTGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	pod1	FBgn0029903	FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966	1	5	6	106	X	6701674	6702856	CAATTATTCCACGTTTGGGT		58	6702925	6702943	GATATTCTCGTGGGATCCC		58	NA	
Drosophila melanogaster	50	CG3168	FBgn0029896	FBtr0070986,FBtr0070985,FBtr0070984	1	3	3	89	X	6617448	6617466	CTTCTCGCAGACATACTCG		59	6616690	6616708	AAGTACGACCAGATCACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	1	8	8	166	X	6579447	6579465	ACAACGTCTTCCACTACAG		59	6579594	6579676	TGGAGAAGTCACATTGAAGG		59	NA	
Drosophila melanogaster	50	CG32755	FBgn0052755	FBtr0070862	2	1	1	115	X	5844917	5844935	ATTCATACCGTGGGAATCG		59	5845013	5845087	ATTTCTCCTTCATGGTGACC		59	NA	
Drosophila melanogaster	50	RpL35	FBgn0029785	FBtr0070800,FBtr0070801	2	2	2	112	X	5567097	5567116	CTCAAGAATGAGTTGCTCAG		58	5567273	5567291	ATCACAATGTAGACGCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	rap	FBgn0003200	FBtr0070687,FBtr0070686	2	2	2	137	X	4568509	4568527	TACTGAAGAACGAGCTCCT		59	4563161	4568408	CATTGTAGTCCTGCTTGGT		59	NA	
Drosophila melanogaster	50	norpA	FBgn0004625	FBtr0100671,FBtr0100670	3	2	4	108	X	4247551	4247569	GAACTGGATAAGCGATCCC		59	4247641	4247989	CATCTAGCCAGATCTTGGC		59	NA	
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	3	13	13	81	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567131	2567221	CTGTATTGAGAGCTCATGCT		59	NA	
Drosophila melanogaster	50	CG14050	FBgn0040392	FBtr0070407	3	1	1	60	X	2218938	2218959	CAGTCCAGTTTCACATTAATCG		59	2218899	2218917	GTTTCCTCAAAGTGACCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14050	FBgn0040392	FBtr0070407	1	1	1	60	X	2219494	2219512	ACAAAGATGCAGTCAATCC		58	2219452	2219476	GTTGGATATAGAGGATACTTAGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp4d1	FBgn0005670	FBtr0070428,FBtr0070427	3	2	2	183	X	2053812	2053830	GAAGAAGTGCTTTGAGGAG		58	2053587	2053665	GAGCTTTCCATTGATCTCG		58	NA	
Drosophila melanogaster	50	csw	FBgn0000382	FBtr0070378	3	1	3	102	X	1989340	1989358	CTACATGGAGAATGGCGAG		59	1989424	2002425	GCCATGAAACCATCTTTCC		59	NA	
Drosophila melanogaster	50	csw	FBgn0000382	FBtr0070378	1	1	3	100	X	1989340	1989358	CTACATGGAGAATGGCGAG		59	1989421	2002423	CATGAAACCATCTTTCCGTG		59	NA	
Drosophila melanogaster	50	CG41534	FBgn0085674	FBtr0114122	1	1	1	60	U	8549856	8549876	GGCATATAAAGTGCGTTATCC		59	8549898	8549916	CGCTGATTCATGATTTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41579	FBgn0085705	FBtr0114154	1	1	1	60	U	6943939	6943957	TTTACTCCAAAGGACGTCG		59	6943977	6943999	CAACACTACCTATAGTACCTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40119	FBgn0058119	FBtr0113799	1	1	1	125	U	4790618	4790637	CCGAAATTTGCATAAACGGA		59	4796357	4796375	ATGTCATACCTGAACTCGT		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG11155	FBgn0039927	FBtr0089194	3	1	3	100	4	1153189	1154508	TATATCCTAGGGCAACCTC		57	1154571	1154590	TAGAAATGCAGCTAAGTTGG		57	NA	
Drosophila melanogaster	50	Pur-alpha	FBgn0022361	FBtr0089993	3	1	4	189	4	580915	581004	TCTCAGGATCAAGGTTCCT		59	581350	581368	GACTTCGTCTACCATCAGC		59	NA	
Drosophila melanogaster	50	Asator	FBgn0039908	FBtr0089108,FBtr0089109,FBtr0089107	1	3	3	80	4	499215	499234	TAACAAACTCCCAAGTAGCC		59	498700	499174	GCTTCGTATACTGTACATCCT		59	NA	
Drosophila melanogaster	50	dpr7	FBgn0053481	FBtr0113462,FBtr0113463	3	2	3	94	4	270593	270667	GTGATTTGGTATCATGGCT		57	270517	270535	CTCGTTGTTCCTACATCAG		57	NA	
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450	3	8	8	168	4	157780	157853	TCGAGCAACCTTAAGACAC		59	158042	158061	CATAAACCAATTGCTTGCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	snoRNA:Psi18S-1377c	FBgn0083049	FBtr0113596	3	1	1	74	3R	26033162	26033180	CCGTTCTTGTGTTATTCGC		59	26033106	26033124	ATTCGTTGCTTCAGTTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1815	FBgn0039863	FBtr0085822,FBtr0085823,FBtr0085824	3	3	3	81	3R	27501823	27501842	TGGTTCACAAATCTATCCCT		58	27501884	27502037	GAAGTAGTCGGTTATCTTGTG		58	NA	
Drosophila melanogaster	50	CDase	FBgn0039774	FBtr0085649,FBtr0085647,FBtr0085646,FBtr0085648,FBtr0085645	2	5	5	81	3R	26289005	26289023	TCTGCTCTATGACATCTCC		57	26289067	26289145	TTTGATGCACAGATACAGTC		57	NA	
Drosophila melanogaster	50	Osi23	FBgn0039771	FBtr0085696	3	1	1	77	3R	26270014	26270094	AATGGCTTAAAGAGGGTGG		59	26269955	26269975	GTAACCTCCTAAATGTTCTCC		57	NA	DesignRelaxed
Drosophila melanogaster	50	sima	FBgn0015542	FBtr0085565	3	1	2	82	3R	25935493	25935578	ATCACATCAAAGAGTCCCG		59	25935623	25935642	AAAGAGAAGTCATCCTCCTG		58	NA	
Drosophila melanogaster	50	CG7816	FBgn0039714	FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921	1	6	6	80	3R	25690544	25690624	GGGCGATAATCAAGATCCT		58	25690482	25690501	ATCGTGAAGATCAGTATGCC		59	NA	
Drosophila melanogaster	50	CG2310	FBgn0039665	FBtr0085434,FBtr0085433	2	2	2	170	3R	25317789	25317807	CAATAATGGCCGTCTACCA		59	25317637	25317655	AGTCCATGAAGTCGAAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cnx99A	FBgn0015622	FBtr0110909,FBtr0085438,FBtr0085437	1	3	4	114	3R	25142527	25142547	CGATATTCTCTTCGACAACCT		59	25142079	25142451	GAATGAGTCCGATTCACGA		59	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085377	2	1	8	103	3R	24959596	24959614	TAAACCAAACGACCGAGTC		59	24959679	24960294	TGATTTCTCCATGTAACCGAG		59	NA	
Drosophila melanogaster	50	CG14519	FBgn0039619	FBtr0085340	2	1	1	126	3R	24817028	24817047	CTTTAATTGGTACAGTGCGC		59	24817136	24817154	TGTTGCAGATATAGCTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0091524,FBtr0091526	3	2	9	127	3R	24746878	24746896	GTGCATCTTGTTCGAACTG		59	24746987	24747076	AAAGAGTATGATTGCGTGC		58	NA	
Drosophila melanogaster	50	CG14528	FBgn0039611	FBtr0085329	1	1	1	60	3R	24703037	24703055	ATCACGAGTACCAATACGG		58	24703079	24703097	ATGTTCTCTGACTGATCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS22	FBgn0039555	FBtr0085247	1	1	1	61	3R	23743111	23743129	GTATTCACGGACATCACCT		59	23743154	23743172	ATATCCCGGACGATTACCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5880	FBgn0039489	FBtr0085108	1	1	1	120	3R	22943140	22943158	TAGAAGCGGTTAGCATGTG		59	22943242	22943320	CAATTGTTGAGCCAAGGAC		59	NA	
Drosophila melanogaster	50	CG5484	FBgn0039450	FBtr0085037,FBtr0085039,FBtr0085038	1	3	3	88	3R	22544580	22544653	ATGCATAAGGATTGGTCCC		59	22544705	22544723	GTGGGCAGATAGAGATCTG		58	NA	
Drosophila melanogaster	50	beat-VII	FBgn0039447	FBtr0085050,FBtr0085051	2	2	2	84	3R	22489332	22489350	TAACTCAACCATCGAGGGA		59	22489021	22489040	TAGATCGAACTGGACATCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14354	FBgn0039376	FBtr0084905	1	1	1	82	3R	21641986	21642004	TATACCAACACGAGGAAGG		58	21642050	21642068	GATCTTCGGTCCCTTACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	XNP	FBgn0039338	FBtr0084837	3	1	2	65	3R	21306131	21306149	TTGTCCTTACTGGTACACC		58	21305986	21306004	TCACAAACTGGATCATGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	bam	FBgn0000158	FBtr0084869	2	1	1	131	3R	21069879	21069897	GAAATACGACGAGTGTGAC		58	21069705	21069784	TGAGTATGGAACTTGTCCG		58	NA	
Drosophila melanogaster	50	CG13663	FBgn0039291	FBtr0084873	3	1	1	60	3R	21040480	21040501	TATCTGCTGTTCTGGATAACTC		59	21040441	21040460	AAACCAATCCAAAGCTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11848	FBgn0039282	FBtr0084779	1	1	1	84	3R	20960784	20960875	GATCCGTACGAATGTACCC		59	20960923	20960941	GATCATCACTTGCACTTGG		58	NA	
Drosophila melanogaster	50	CG11920	FBgn0039274	FBtr0084769	2	1	1	60	3R	20901485	20901505	GATGAACAGAGGAAACTACCA		59	20901527	20901545	TACATTATTGGCACGACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11790	FBgn0039265	FBtr0084760,FBtr0084761	1	2	2	89	3R	20874456	20874474	TGAGAAGGGATATACCCAG		57	20875008	20875026	AAATAACTTTGCAGTGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5762	FBgn0039190	FBtr0084627	2	1	1	61	3R	20186935	20186953	TAATTTCCCGGACAGTGTG		59	20186892	20186910	CCATCGACTCCAGAAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13611	FBgn0039177	FBtr0084600	2	1	1	89	3R	20105967	20106386	ATTGACTTCTACTTCACCTACC		59	20106436	20106454	GATAAATTGCAGCTGCTCC		59	NA	
Drosophila melanogaster	50	spas	FBgn0039141	FBtr0084533,FBtr0084534	1	2	2	68	3R	19866502	19866520	AATGGTCATTCTACCCTCC		58	19866610	19866628	AATAAACCCTTAGCCGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5902	FBgn0039136	FBtr0084501,FBtr0084502	2	2	2	80	3R	19812868	19812886	GAATCACAGGCTAGAGGTC		59	19812929	19813004	GTCCTCTAATCGTCTTCTGC		59	NA	InUTR
Drosophila melanogaster	50	rumi	FBgn0086253	FBtr0084320	2	1	1	60	3R	18575471	18575492	CGAACGTGATTCTCTTATTCTG		59	18575432	18575450	GTATTGAGCCTCGACTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wfs1	FBgn0039003	FBtr0084334	3	1	2	93	3R	18515859	18515877	AACTTAAGCATCACATCGC		58	18515727	18515803	AGATTGGGCTCTACTATGGA		59	NA	
Drosophila melanogaster	50	CG33092	FBgn0053092	FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144	1	7	7	268	3R	17705102	17705177	AGGACTTTCGGGATTTGTG		59	17705407	17705427	AGGTACCAGTGAAGTTAATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33092	FBgn0053092	FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144	3	7	7	268	3R	17705102	17705177	AGGACTTTCGGGATTTGTG		59	17705407	17705427	AGGTACCAGTGAAGTTAATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13420	FBgn0038900	FBtr0084130	1	1	1	62	3R	17594518	17594536	ATCTCTGGTACGGAAAGTG		58	17594562	17594580	ATTCTCCTCGTACATACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31198	FBgn0051198	FBtr0084128	2	1	1	82	3R	17581768	17581786	TCATCCGTATGATCAAGCA		58	17581829	17581909	CTGATACTCGTATTTCTTCAGG		58	NA	
Drosophila melanogaster	50	Oamb	FBgn0024944	FBtr0083932,FBtr0083933,FBtr0083934	1	3	3	90	3R	16526375	16526393	ATTGTCAACCTAGCTGTGG		59	16526041	16526324	CGAATATCCAAACCTTGAAGAC		59	NA	
Drosophila melanogaster	50	Pi3K92E	FBgn0015279	FBtr0083940,FBtr0083941	2	2	2	84	3R	16457025	16457246	GCTTACACTTTCTGAAAGACG		59	16456961	16456979	CTTTCCAGGTACGATTCGT		59	NA	
Drosophila melanogaster	50	Srp72	FBgn0038810	FBtr0083911	3	1	1	247	3R	16416254	16416272	AAGACTGCCAATACCAAGG		59	16416483	16416559	GACATGTCGTATTGATCGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG3581	FBgn0038697	FBtr0083775	2	1	1	71	3R	15200058	15200076	AATTTCAGGAGAAGGTCGC		59	15200005	15200023	AGATGTACTGATGCTTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dl	FBgn0000463	FBtr0083740,FBtr0083739	3	2	2	74	3R	15137560	15137578	TATCTGTTTGACCGGATGG		59	15134450	15134468	CAATGTCCATGTTCACAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	sqz	FBgn0010768	FBtr0083733	2	1	1	168	3R	14993955	14993973	CAACAGCAAATGGTCATGG		59	14994105	14994303	GATTCGGGTCGTACTTCTG		59	NA	
Drosophila melanogaster	50	osa	FBgn0003013	FBtr0089581,FBtr0089582,FBtr0089583	1	3	3	108	3R	13533850	13533868	TCTCAATATTCGCCGTACC		59	13533696	13533778	GATTCGGTTCGGGATACTG		59	NA	
Drosophila melanogaster	50	CG14891	FBgn0038445	FBtr0083301	3	1	2	60	3R	12397519	12397538	TCTTTATTTACAGGCCAGCA		59	12397561	12397579	AAGAGTTCCTGATTCCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gyc-89Da	FBgn0038435	FBtr0110963,FBtr0110962	1	2	2	60	3R	12299781	12299800	CTTCACATTTGTGCTGAACC		59	12299823	12299841	CTCAACGATCTTCTCACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6126	FBgn0038407	FBtr0083278	1	1	1	209	3R	12025092	12025110	TTCTCATTCATGGTGGCTC		59	12024839	12024857	GTAGATCACTTGGAGCCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8925	FBgn0038404	FBtr0083253	1	1	2	95	3R	12000208	12003269	TCTACGTGTTCCAGATTGC		59	12003328	12003346	ACTGACTAATATTGCGCCA		59	NA	
Drosophila melanogaster	50	CG34276	FBgn0085305	FBtr0112471	2	1	1	91	3R	11752005	11752023	TCTGCAGCAGAGTTATTCG		59	11752148	11752166	AGTTGTAGAACCAATTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9593	FBgn0038365	FBtr0083178	1	1	1	103	3R	11628447	11628467	CCTTACCAAAGGAACTTACTG		58	11628604	11628622	AAACCTATAGACGCCATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6118	FBgn0038339	FBtr0113240,FBtr0113239	2	2	2	93	3R	11249454	11249474	AGGTGAATGTCAAGTATGAGG		59	11249255	11249399	CTGTCCAGGTTCTTCTCTG		59	NA	
Drosophila melanogaster	50	CG7530	FBgn0038256	FBtr0083020,FBtr0083021,FBtr0083019	3	3	3	167	3R	10551641	10551769	ATGAGACGATCAACATCTGG		59	10551493	10551511	GGTATATGGCGGACATCAG		59	NA	
Drosophila melanogaster	50	CG31320	FBgn0051320	FBtr0082943	1	1	1	60	3R	10184973	10184991	GAATGTAGAACGTGAGTCC		57	10184931	10184950	TTCCACAATCTGAGATACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34383	FBgn0085412	FBtr0112621	1	1	4	173	3R	9585737	9585824	ATACCTGAAACACTGTCGC		59	9586026	9586044	GATTTGGTTGAGTTGCAGC		59	NA	
Drosophila melanogaster	50	CG9611	FBgn0028487	FBtr0112937,FBtr0112938	3	2	5	138	3R	9522483	9522559	TTTCCGGATAGCTTTCACC		59	9522363	9522381	TCTGGCGATCATATTCCTG		58	NA	
Drosophila melanogaster	50	desat1	FBgn0086687	FBtr0082630,FBtr0082628,FBtr0082627,FBtr0082626,FBtr0082629	2	5	5	108	3R	8272013	8272031	TCCAATCCTCATGTTCCAG		58	8272164	8272182	GTTCATGAAGGATTCACCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10041	FBgn0038014	FBtr0082613	3	1	1	60	3R	8177550	8177568	TTTCGAATGAGTTCGTGCT		59	8177508	8177526	AGTTGTTTGGTTGGATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6971	FBgn0037962	FBtr0082514	2	1	1	60	3R	7718291	7718312	ACTCTTGAACTAGACAAAGAGG		59	7718252	7718273	CCTGCTTAAGTTTCATATCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31368	FBgn0051368	FBtr0082477	1	1	2	80	3R	7717450	7717470	ATATGTATTTGGCAGGGTCTC		59	7717510	7717598	CTCAACTTCAAAGGTCTAAGC		58	NA	
Drosophila melanogaster	50	CG31391	FBgn0051391	FBtr0082321	2	1	1	60	3R	6530462	6530481	GGTGCTAAGAGATATTCGAG		57	6530421	6530442	GTAGGTTAGAAAGTCTTTAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31406	FBgn0051406	FBtr0082236	2	1	2	273	3R	6175179	6175197	ACGCACAAGAATCTATCGA		58	6175612	6175630	TATTCGGCTTGATGTTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31410	FBgn0051410	FBtr0082175	2	1	1	152	3R	5879814	5879832	CTTCTATGTGGAGCCTTCG		59	5879947	5879966	CAGTCCAACAGATATCCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8478	FBgn0037746	FBtr0082133,FBtr0082132	1	2	2	94	3R	5590340	5590415	TAACTGAAGTATCCAACGAAGG		59	5590470	5590488	GACTTCGTTCACTACCTCG		59	NA	
Drosophila melanogaster	50	CG31415	FBgn0051415	FBtr0082127	3	1	1	185	3R	5569823	5569841	GAAGTCTACCACCTCAGAG		58	5569990	5570008	ATTTATTGCACTGCTGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7352	FBgn0037581	FBtr0081842	2	1	1	60	3R	4174172	4174190	CCAGGAACTCAGAGAATGG		59	4174212	4174232	CTGGACTAAGTCACTCAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dsx	FBgn0000504	FBtr0081760,FBtr0081761	1	2	3	60	3R	3761506	3761524	CAACATTGAAGAGGCTTCC		58	3761350	3761368	GGAGTACTCATTCACAACG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17816	FBgn0037525	FBtr0113203	1	1	3	152	3R	3691470	3693768	GAAAGAAGCTACTCTACATGAG		58	3691069	3691087	GTGATGAAGTGGTTTAGGC		58	NA	
Drosophila melanogaster	50	CG2616	FBgn0037512	FBtr0081738	3	1	1	60	3R	3548863	3548882	TATGAACAGTTCAAGGCCAG		59	3548901	3548923	CCTGACTCTTATTATAGTGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pb	FBgn0051481	FBtr0089278	1	1	4	136	3R	2537663	2565280	ACAATCAGGCTGAATTCGT		59	2537545	2537563	TATCTCGATCCTCCTTGGG		59	NA	
Drosophila melanogaster	50	Ccp84Ag	FBgn0004777	FBtr0081689	1	1	1	162	3R	2512833	2512851	GTACACCTACGGCTATGAC		59	2512977	2512995	GTTGAATCCGTTGATGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	agt	FBgn0024912	FBtr0081697	2	1	1	60	3R	2485454	2485474	GATAAACTGTTCGAAAGCGAC		59	2485414	2485432	TTCCATAGATGGCAATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31563	FBgn0051563	FBtr0078586	2	1	1	61	3R	1979210	1979228	GGTGACAAAGTGAGTTGTG		58	1979253	1979271	ACAAATTGGAGTTGCTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34122	FBgn0083958	FBtr0110829	3	1	1	130	3R	1513866	1513885	AAATAGCACCCAGATAACCG		59	1515641	1515659	TCCATTCAACCAAGAAGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1109	FBgn0046222	FBtr0078713,FBtr0078714	1	2	2	84	3R	1487666	1487684	GTTAAGTACTGGCAGTCCA		58	1487731	1488795	TGGGACTGAAACTTATTCCC		59	NA	
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078809,FBtr0078810,FBtr0100199	1	9	15	151	3R	1119084	1119795	AGTATTCTCAAGACGTTCCTC		59	1118953	1118971	TAAAGAGTTCCGGCTTGTC		59	NA	
Drosophila melanogaster	50	CG31523	FBgn0051523	FBtr0078938,FBtr0078935,FBtr0078936,FBtr0078937	3	4	4	93	3R	293416	293435	TTTCTACTACATGATCGCCG		59	293283	293361	CACGAATTGAACCATTTGGA		59	NA	
Drosophila melanogaster	50	Snap25	FBgn0011288	FBtr0111143	2	1	2	173	3L	24154271	24203130	ATCAAGGAGAACAACTGGA		58	24246920	24246939	CATCATTTCCTTTCCAGGTC		58	NA	
Drosophila melanogaster	50	CG40470	FBgn0058470	FBtr0111152	3	1	1	93	3L	23928213	23967707	TGGATTAGAGGCGTTTGTC		59	23928138	23928157	GACTTCATAGCTTAGAGGCA		58	NA	
Drosophila melanogaster	50	CG17698	FBgn0040056	FBtr0111168,FBtr0111167	3	2	3	163	3L	23734173	23739296	CAAATTGGACAGGGATCCT		59	23739420	23739441	CTGTAAACTCGATCTAGAGGTG		59	NA	
Drosophila melanogaster	50	Mes2	FBgn0037207	FBtr0078563,FBtr0078562	1	2	3	88	3L	22939124	22939142	AGTCGAAAGTCGATACGTC		59	22939194	22939212	ATTGCACATAGGGTGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11137	FBgn0037199	FBtr0078577	2	1	1	106	3L	22861085	22861103	CAATCCATCTGCTTTGGTG		59	22860945	22861018	TCATGGGAATGTTCTTAAGAGG		59	NA	
Drosophila melanogaster	50	eg	FBgn0000560	FBtr0078437,FBtr0078438	2	2	2	98	3L	21807935	21807953	ATTTACATGTGAAGGCTGC		58	21809436	21809454	TTGTTGATCACGCAATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11247	FBgn0037120	FBtr0113184,FBtr0078459,FBtr0078458	1	3	3	149	3L	21718589	21718666	TATCAGTGTAGGATCTGCC		57	21718458	21718476	CATGTGGTTCTTTAGGTGC		58	NA	
Drosophila melanogaster	50	CG32441	FBgn0052441	FBtr0078375,FBtr0078376	1	2	2	68	3L	21568000	21568333	GACTTGCTGAAGAAACTGG		58	21568365	21568383	ATTTGAATACACCACCGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10512	FBgn0037057	FBtr0078297,FBtr0078300,FBtr0078298	2	3	4	297	3L	21199477	21199495	GATGCCATTAGGAGGATCC		59	21200565	21200583	CTTCTTCTCCTTGTCTCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5969	FBgn0036998	FBtr0078198	3	1	1	84	3L	20467169	20467187	TCTACTGCATGCTTATCGT		58	20467235	20467253	GAAATGTCGAGGAACTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fln	FBgn0005633	FBtr0074910	1	1	1	89	3L	19983177	19983257	GAATATCAGTGGCAGTGAC		57	19983106	19983124	TAAGTTCTTATCGAGGCCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG14100	FBgn0036889	FBtr0074971	3	1	1	61	3L	19582410	19582428	TTGGAGGTAAGGGAAAGTG		58	19582367	19582386	CACATTCAAGCTATCGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075006,FBtr0075013	2	2	11	81	3L	19302864	19302882	ATATACCGCGTTATTTCCG		57	19302745	19302763	ACATTGTTGCGATTCACTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10424	FBgn0036848	FBtr0075033	2	1	1	65	3L	19090177	19090195	AATCTGATCTGTGGACAGC		59	19090130	19090148	AAACAGTCTCTGGAACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6852	FBgn0036820	FBtr0114591,FBtr0075063	3	2	2	79	3L	18862635	18862653	AATAGTCGACATGTCCACC		59	18862696	18862714	TCTTGCTGAATATCACCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AlCR2	FBgn0036789	FBtr0100242,FBtr0089387	2	2	2	130	3L	18480555	18480573	TCCACACTGGATTTCACAG		59	18480230	18480248	ACAGTATTGGGTTCATGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7510	FBgn0036741	FBtr0075182	3	1	1	80	3L	17621049	17621067	AATCCGAGCTTTCAGTACG		59	17621110	17621389	GCCAACGGTTACTATAAAGC		58	NA	
Drosophila melanogaster	50	CG7603	FBgn0036726	FBtr0075220	2	1	1	160	3L	17459182	17459200	GCAATAGACTGTCACTCTC		57	17459386	17459404	CTTGATGTCGTTGTACAGC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	noe	FBgn0026197	FBtr0110845	1	1	2	153	3L	17393606	17393624	CCATAGAGACGTTTAAGGC		57	17393471	17393489	GTGTTGTGTCGTAATTTGC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Exn	FBgn0027593	FBtr0075271,FBtr0075273,FBtr0075272	3	3	3	191	3L	16983971	16984124	CATTCGTAGATGACTCAGAC		57	16984278	16984296	AATCATCCGAAATGACCAC		57	NA	
Drosophila melanogaster	50	Nrt	FBgn0004108	FBtr0075323,FBtr0075322	1	2	2	216	3L	16767347	16767365	AGGACGAACAGAAATCTCG		59	16767608	16767626	ATCATGTTAGCGATTGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	zetaCOP	FBgn0040512	FBtr0075352,FBtr0075353,FBtr0075351	2	3	3	112	3L	16666237	16666255	TTCCATTAGCCTGATCCTC		58	16665631	16666161	CATCCAGAATAATGCCTCC		57	NA	
Drosophila melanogaster	50	CG4573	FBgn0036629	FBtr0075411	1	1	1	86	3L	16409017	16409036	TTTGTCTGGGAATGAGAGTC		59	16408890	16408968	TCTAAGTTGGAGTGTTGCG		59	NA	
Drosophila melanogaster	50	retinin	FBgn0040074	FBtr0075375	2	1	1	158	3L	16325341	16325359	AAGATCAATCCCAGGAGGA		59	16325481	16325499	TCAATACGGTTCGTAGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13073	FBgn0036577	FBtr0075486,FBtr0075485	2	2	2	68	3L	16206247	16206267	TTCATACTGTACACGGAAGTC		59	16206199	16206217	CTTCGAATGGAAATCGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	comm2	FBgn0041160	FBtr0075580	3	1	1	60	3L	15692583	15692604	GTGATTTCCTGAAACAGATTGG		59	15692544	15692562	TGCTGATGTTTCAGTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10006	FBgn0036461	FBtr0075628,FBtr0113171	3	2	2	90	3L	14989464	14989484	CAGATCGATAATGGAGTTTGC		59	14989536	14989611	CATAGATCCAAGCGTACCA		58	NA	
Drosophila melanogaster	50	Brd	FBgn0000216	FBtr0075621	3	1	1	214	3L	14965850	14965868	AACTCTGATGAACACCACC		59	14966046	14966064	CTTCCAATTGCTCGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ome	FBgn0002997	FBtr0112816	3	1	2	196	3L	14733239	14737298	GCGGTTCAAGAATCTAATGC		59	14737457	14737475	GACCACTTAGCACATCCTC		59	NA	
Drosophila melanogaster	50	CG6650	FBgn0036402	FBtr0075769	1	1	1	80	3L	14025984	14026061	CACATGTCTAGAAAGCTGC		58	14026105	14026123	ATGGATGTCATCGTTTGGA		58	NA	
Drosophila melanogaster	50	CG14110	FBgn0036352	FBtr0075844	2	1	1	60	3L	13378377	13378395	CGAGATGGTGATCTACAGG		58	13378419	13378437	GATAACCCTGATCCGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32115	FBgn0052115	FBtr0075904	3	1	1	60	3L	12906489	12906508	TATCCTTAATTTCGCTACCG		57	12906448	12906467	TATATCCCAGTCCCTAACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10960	FBgn0036316	FBtr0075942,FBtr0075943,FBtr0075941	1	3	3	133	3L	12820168	12820186	GTATCCTGTTCGTCTATGC		57	12819719	12820071	TTTGGAAACCAAGTAGGTG		57	NA	
Drosophila melanogaster	50	Ncc69	FBgn0036279	FBtr0075987,FBtr0075988	2	2	2	92	3L	12362374	12363044	AAATTGAGAGTTTACGCGC		59	12362300	12362318	ATCGATCCGGAATTTCGAC		59	NA	
Drosophila melanogaster	50	CycA	FBgn0000404	FBtr0076075,FBtr0076076	1	2	2	80	3L	11821209	11821298	ACATGACGCTGTATATTTCC		57	11821148	11821166	CGGATGACATAAGTGATGG		57	NA	
Drosophila melanogaster	50	CG32086	FBgn0052086	FBtr0076147	3	1	1	89	3L	11576401	11576420	CAAGTGGACTTTATGGATCG		58	11576280	11576298	AACACCGAAAGTTATGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11726	FBgn0036156	FBtr0076172	1	1	1	60	3L	11388199	11388217	TCCGTTCTCTAACCATTCC		58	11388240	11388259	ATTTCCACATACGCAAATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34012	FBgn0054012	FBtr0100067	2	1	1	103	3L	11102163	11102256	GCTAGTGCCTATGATTAACAC		58	11102080	11102098	ATGGACTCTCCATGAAGAG		58	NA	
Drosophila melanogaster	50	CG8003	FBgn0036096	FBtr0076260	2	1	1	76	3L	10655708	10655786	GATGAGGTGGATTACGGAC		59	10655826	10655844	ACTTGGAGCACTTCTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32062	FBgn0052062	FBtr0113419,FBtr0113420,FBtr0113418	3	3	5	121	3L	10561593	10561611	CAGAATATTCAAGTGGCGG		58	10561696	10566558	TACTGTGGACTTCTGTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8336	FBgn0036020	FBtr0076384,FBtr0076386,FBtr0076385	3	3	3	127	3L	9624224	9624296	CTCGACAAGTTCACAGGAG		59	9624387	9624405	TAGTATCGATTCGCCTTGC		59	NA	
Drosophila melanogaster	50	CG33702	FBgn0053702	FBtr0091690	2	1	1	60	3L	9506006	9506024	CTTTCAACGATAAGACGCT		57	9505964	9505983	AGTTTGTATTCACCAACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsp27	FBgn0001226	FBtr0076454	2	1	1	178	3L	9377320	9377338	AGTTGGATCATGACTACCG		58	9377480	9377498	TGACATTTGATTGTGGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	orb2	FBgn0035938	FBtr0076563,FBtr0076561,FBtr0076564,FBtr0076562	1	4	4	60	3L	8936365	8936386	ATCATGGATAGATTGTACGGTG		59	8936326	8936344	TTAATTCCGGATCGGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32352	FBgn0052352	FBtr0076628,FBtr0076629,FBtr0076630	2	3	3	163	3L	8581770	8581788	ATCAAGAAGGAAGCTTCCC		59	8581913	8586581	TCGTATTCATGATCACTCTCG		59	NA	
Drosophila melanogaster	50	CG8005	FBgn0035854	FBtr0076695	3	1	1	61	3L	8192047	8192066	AAGATTATTCATCGGTTGGG		57	8192090	8192108	GCAGCCCAATAGTAAATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8111	FBgn0035825	FBtr0076770	2	1	1	60	3L	7907685	7907703	CACCTACTATTACACGCGG		59	7907643	7907661	GTTGTAGAAGTTTCGCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32387	FBgn0052387	FBtr0076920,FBtr0110848	1	2	3	93	3L	7157941	7158034	TACAGACACAAGCAAAGTC		57	7157866	7157884	GAATGGTGGCATAATACCG		58	NA	
Drosophila melanogaster	50	CG10103	FBgn0035715	FBtr0076949	2	1	1	109	3L	6748216	6748530	ACTTTATCGATCGTGAAGC		57	6747860	6747878	ATTAATGGAGGTGTAACGC		57	NA	
Drosophila melanogaster	50	zpg	FBgn0024177	FBtr0076983	3	1	1	98	3L	6598425	6598444	TTACAAAGAGACCCACTTCC		59	6598274	6598292	AATACGTCCAACAGAAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr65Av	FBgn0052405	FBtr0077024	3	1	1	74	3L	6132845	6132866	CATACTAAGATACGACAACGAC		58	6132682	6132701	GTAACTCCATCACTGGTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6596	FBgn0035671	FBtr0077045	3	1	1	60	3L	6059803	6059823	TGGACTTTGATGACATACTCC		59	6059843	6059863	AACAGTAGCTTCTGATATCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jon65Aiii	FBgn0035665	FBtr0077041	3	1	1	60	3L	6044358	6044379	CCTTATTAACAAGGTTGAGCTG		59	6044400	6044418	CTGTCCAGTGTAAGTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PGRP-LD	FBgn0035635	FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577	1	4	4	107	3L	5775936	5776021	TGCATAAGCTGGAAAGGTC		59	5776092	5776110	GATACTGGCTCCGATAGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG15212	FBgn0040842	FBtr0077163	2	1	1	81	3L	5124921	5124941	TGATCGGCGATAATATCTACC		59	5124984	5125002	TTCTTCAGCTTGAAGATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dhc64C	FBgn0010349	FBtr0073360	3	1	2	142	3L	4813436	4813454	AAGAAGATTCAGTCGCAGG		59	4813074	4813330	TTAATCGAGCTAACGGCTG		59	NA	
Drosophila melanogaster	50	Fit1	FBgn0035498	FBtr0073209,FBtr0073210	3	2	2	60	3L	4105483	4105501	ATTCCTCAAGCCTCAAAGG		59	4105524	4105543	CCTGTAGGTGAAGAAGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12006	FBgn0035464	FBtr0073150,FBtr0073149	2	2	2	83	3L	3812981	3812999	AATACAGAGATGAACGCGA		58	3813043	3813127	GGTGAATGTGACTATAGTATGG		57	NA	
Drosophila melanogaster	50	RpL28	FBgn0035422	FBtr0073097,FBtr0073095,FBtr0073096,FBtr0073098	3	4	4	87	3L	3221935	3221954	CAATTGGTTGATCATTCGCA		59	3221695	3221885	CAAGTTGTTTGGCTCTGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12734	FBgn0035411	FBtr0073036,FBtr0073035	2	2	2	140	3L	3183013	3183031	TACAAGATGGTACGCATGG		59	3183134	3183208	TATCAACATCTCACAACGCT		59	NA	
Drosophila melanogaster	50	Acp62F	FBgn0020509	FBtr0072943	2	1	1	77	3L	2739995	2740013	ATCAATGAGAGGATTCCGG		58	2740052	2740072	CAGTAGCATATCTTCCTTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	obst-I	FBgn0052304	FBtr0072880	1	1	1	60	3L	2268005	2268023	AACGAAACTATCCAAGCCT		58	2268046	2268065	CGATTTGGTGATTGGTACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32308	FBgn0052308	FBtr0113432	3	1	2	122	3L	2037607	2037625	GAGGAACACCATCGTAGAC		59	2037448	2037466	TTCTTGAGAAAGCTCTCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mu2	FBgn0002872	FBtr0072856	1	1	2	112	3L	1945586	1945661	CAAAGTTGCATCAGATTCGA		58	1945493	1945511	CCTCATTGGGACTTACAGG		59	NA	
Drosophila melanogaster	50	R	FBgn0004636	FBtr0072867	3	1	1	165	3L	1861083	1861101	GGACAGTTACAGGAAGCAG		59	1860936	1860954	ATCGTTAAACGTCGATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Psa	FBgn0035226	FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697	2	6	6	114	3L	1520666	1520684	TGAGACCTTTGTGCTAGTG		59	1520761	1521150	CATAGTTACCAGATTGCCGA		59	NA	
Drosophila melanogaster	50	SA-2	FBgn0043865	FBtr0113348,FBtr0072715	3	2	2	146	3L	1434913	1434995	TACGTAAAGTACCACGCTC		59	1434785	1434803	ATGACGAGTATCATCTGGG		58	NA	
Drosophila melanogaster	50	CG9205	FBgn0035181	FBtr0072621,FBtr0072622	1	2	2	236	3L	1035939	1036032	GTTTCTCACGGAACAATGC		59	1036232	1036250	CTGGAGACTATCCTTGCAG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	nerfin-1	FBgn0028999	FBtr0072592	3	1	1	91	3L	910150	910168	AAGCAGTTCAATTGTCCTG		58	910223	910241	GTGGTATTGCGATTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32845	FBgn0052845	FBtr0072518	3	1	1	60	3L	272465	272483	TATGTCTAGTTGTTCGGGT		57	272423	272441	CTCAGACACAGAAGTCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA-Psi:CR33363	FBgn0053363	FBtr0086355	1	1	1	62	2R	15650036	15650054	AATACATCGGTTCTCGTCC		59	15649992	15650010	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33387	FBgn0053387	FBtr0086379	1	1	1	62	2R	15641158	15641176	AATACATCGGTTCTCGTCC		59	15641114	15641132	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	gol	FBgn0004919	FBtr0072460,FBtr0072459	1	2	2	73	2R	20962926	20962944	ACACCATACGGATATTGCC		59	20962813	20962831	TCGATGCTCTATAAGCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	pio	FBgn0020521	FBtr0072312	1	1	2	101	2R	20479690	20479767	GAGTACAGAGATCATGTGGG		59	20483388	20483407	GTTGAAGAACTCAATGCCAC		59	NA	
Drosophila melanogaster	50	CG3803	FBgn0034938	FBtr0072208	2	1	1	60	2R	19840973	19840991	CAATACCCAGAGTACAAGC		57	19840873	19840892	AAATGAACTTGAACTCCTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13562	FBgn0034928	FBtr0072135	1	1	1	99	2R	19792039	19792058	GCTATATGTTTGGCTTCAGC		59	19792120	19792195	ATATCGCACGTGTCTATGC		59	NA	
Drosophila melanogaster	50	Upf3	FBgn0034923	FBtr0072222,FBtr0072221	3	2	2	61	2R	19781275	19781293	CAAAGTCCATGGACATCGT		59	19781232	19781252	CAAACTCTCGTTTGATTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17280	FBgn0034877	FBtr0072061	3	1	1	224	2R	19435822	19435841	ATTCTAAACCACGCAATTCG		59	19436179	19436197	CAGGTAGTCGTACTTGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9815	FBgn0034861	FBtr0113111,FBtr0072024	1	2	2	190	2R	19309400	19309471	GATTCCAATTTCGACGCTG		59	19309228	19309246	AAGATTACGCCATCTCCTC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Gr59c	FBgn0041235	FBtr0071977	2	1	1	60	2R	18990427	18990447	CTCCATCTACTTTAGCGTCTG		59	18990387	18990406	GTATGTAGAGCCGAATCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9897	FBgn0034807	FBtr0071989	2	1	1	60	2R	18873094	18873114	CCGATGTCTATGCAAATATCC		58	18873054	18873074	TAATCCTTCGTATTCGAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3499	FBgn0034792	FBtr0071906	2	1	1	81	2R	18772306	18772439	TATCTGAAGACTATCGTCGT		57	18772244	18772263	GAAATACGGATCCATTGGAG		58	NA	
Drosophila melanogaster	50	CG30266	FBgn0050266	FBtr0071887	2	1	1	127	2R	18711274	18711292	GCAAAGAACGACATATCGC		59	18711436	18711456	CCGTCATTATCCGTAATTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34208	FBgn0085237	FBtr0112401	2	1	1	121	2R	18220670	18220688	GTTTGTTCCTGGTATTCGG		58	18220773	18220791	GTTATCGTTTCGAGGACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GM130	FBgn0034697	FBtr0071789,FBtr0071790	2	2	2	131	2R	18013744	18013762	TAAAGAGGCCAGTCAAGTG		59	18013576	18013594	ATCTTCAGCTGGAATTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10433	FBgn0034638	FBtr0071691	2	1	2	169	2R	17494114	17494195	AGTTACTACATGCTGCAGG		59	17493856	17493981	TTTGATCGGAGTTCGTAGC		59	NA	
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708	3	9	9	94	2R	17398737	17398915	TTTGCCAGAGGATTACGTC		59	17398972	17398991	AACCAATCACCGACTTTAGG		59	NA	
Drosophila melanogaster	50	RpL29	FBgn0016726	FBtr0071593,FBtr0071594,FBtr0071592	1	3	3	136	2R	17181657	17181744	CACTCTGGGTATGGATGTG		59	17181844	17181862	ACAGAGTAACAGGCTTTGG		59	NA	
Drosophila melanogaster	50	Hil	FBgn0050147	FBtr0086256,FBtr0086255	2	2	2	96	2R	16502072	16502090	GCTTCAAATGCGTACACTG		59	16500960	16502013	TGTGAACTGCAATAGACCTC		59	NA	
Drosophila melanogaster	50	CG11788	FBgn0034495	FBtr0086277	2	1	1	86	2R	16163355	16163374	CAATATAAGCGATCGCATGC		59	16163421	16163499	GTAAAGCACTCTATGTACGGT		59	NA	
Drosophila melanogaster	50	CG7744	FBgn0034447	FBtr0086535	2	1	1	81	2R	15341638	15341657	TTGTTATGGAGTGGGTATGC		59	15341699	15341770	AACTTCCCACCAGTATAAAGG		59	NA	
Drosophila melanogaster	50	CG15117	FBgn0034417	FBtr0086594,FBtr0100129,FBtr0086593	2	3	3	113	2R	15010499	15010517	AACCCAGAATGTGATCGAC		59	15010305	15010422	TAAGCAGGTTGCATATGCA		59	NA	
Drosophila melanogaster	50	CG10924	FBgn0034356	FBtr0086699,FBtr0113093	3	2	2	60	2R	14421136	14421156	GGATGAAGTTCGATAACAAGG		58	14421178	14421196	CCAAAGAATCCATTCTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	3	8	8	99	2R	14032395	14032483	AGGAAAGAATTCTGAGAAGC		57	14032544	14032563	CTCAATCATCGGATACAGAC		57	NA	
Drosophila melanogaster	50	Pkc53E	FBgn0003091	FBtr0112819,FBtr0087048	1	2	3	145	2R	12814305	12815641	TTTATCTGCGGCTATCAGTC		59	12818764	12818782	GAATCGATGCCCTTATCCT		58	NA	
Drosophila melanogaster	50	Hmgs	FBgn0010611	FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146	2	5	5	60	2R	12227690	12227709	CAGAAGGATACTTCCAAGCA		59	12227731	12227750	TGTGGAATAGGATAGCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12963	FBgn0034031	FBtr0113082,FBtr0087337,FBtr0113083,FBtr0087338	2	4	4	124	2R	11449472	11449490	ATGTGTAACCTGACCACTC		58	11449578	11449596	GGATCTGTCTCCGAATACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SRPK	FBgn0026370	FBtr0087384,FBtr0087383	3	2	3	95	2R	11269909	11270916	CTGTTTCATGATCGCTACC		58	11270975	11270993	CACATATCCCATTGCTTGC		59	NA	
Drosophila melanogaster	50	Pms2	FBgn0011660	FBtr0087388	3	1	1	101	2R	11257149	11257167	CAAGTGATGTTGACATGGC		59	11257004	11257085	GATCATAAGCCTCAGACTCC		59	NA	
Drosophila melanogaster	50	pcs	FBgn0033988	FBtr0087412	3	1	1	99	2R	10877274	10877292	AAGGCTAGACCCTACTACG		59	10877354	10877436	CATGGATTTCATTAGCTCGC		59	NA	
Drosophila melanogaster	50	AttB	FBgn0041581	FBtr0087438	3	1	1	93	2R	10636772	10636790	AGCATCCTTATCTTGGCAC		59	10636847	10636865	CTAAGGAACCTCCAAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13323	FBgn0033788	FBtr0087797	3	1	1	83	2R	8934575	8934594	CGATCAAGAACAACTACTGG		58	8934511	8934529	AGTTGTCGTAGACGATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sug	FBgn0033782	FBtr0087789	3	1	1	80	2R	8817355	8817373	AGACGGACTCTACTATTGC		58	8817417	8817435	TGGACAAGCATCTTGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12488	FBgn0033772	FBtr0087851	3	1	1	88	2R	8636959	8637039	AGCAGAAGATTGTCTACTCC		58	8637089	8637108	ATTCGAACGGATGTTAACCA		59	NA	
Drosophila melanogaster	50	CG33632	FBgn0053632	FBtr0091609	3	1	1	92	2R	8409949	8409967	GAAATCCCAATCCGATTGC		59	8410020	8410093	GCACAAGATCATGGTTATAAGG		59	NA	InUTR
Drosophila melanogaster	50	fdl	FBgn0045063	FBtr0087946,FBtr0087947	2	2	2	131	2R	8376192	8376277	GAAAGAAGCAGGTACTGGG		59	8376079	8376098	GATCATCGCTAGGATCAGTC		59	NA	
Drosophila melanogaster	50	Oda	FBgn0014184	FBtr0088015,FBtr0088013,FBtr0088014	2	3	3	284	2R	8055514	8055532	AGAACAGATCACGATAGGG		58	8055182	8055203	CAGAATCGTATTCCAATTGGTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12341	FBgn0033550	FBtr0088251	2	1	1	77	2R	6699991	6700009	CATAATCAGCAGTGCAGTC		58	6699932	6699950	CAGATCATGGCGTATATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	3	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421093	TAGTAAGGTAGCAAAGTAGGGA		59	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	3	9	9	198	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349188	6349206	CTTAGTACAGTCCACAGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Cyp4p1	FBgn0015037	FBtr0088592	2	1	1	95	2R	5128336	5128420	ACAGTATTTGTGAAACCGC		58	5128478	5128497	AGCATTCTTCAATCTGACTG		57	NA	
Drosophila melanogaster	50	CG18659	FBgn0027561	FBtr0088626	2	1	2	84	2R	5013711	5014937	ACCTTAAGGACAAGACTAATCC		59	5013534	5013552	TTATAGGCGGTCTTCATGC		59	NA	
Drosophila melanogaster	50	CG8083	FBgn0025709	FBtr0088561	3	1	3	137	2R	4967664	4967744	AACTGGATCATGAGTTGGAC		59	4967844	4967862	AAATCGAGATCCTCACCAG		58	NA	
Drosophila melanogaster	50	CG13748	FBgn0033355	FBtr0088656	1	1	1	111	2R	4827989	4828007	AAAGAGTACGTTGGAGTGG		59	4828082	4828100	AGATGGCGTCAAAGAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088988,FBtr0088989,FBtr0088990	3	3	9	92	2R	3362872	3362952	AATAAATGCAGGAGATCGG		57	3361300	3361318	GGTTGTGATGTGAAGATCC		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111070,FBtr0111098,FBtr0111062	2	3	60	84	2R	3238142	3238160	TTCCTATACACGGTCTGTG		58	3236471	3238097	CTTGTACCATCTCATAATGGGA		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111080	1	1	60	80	2R	3243725	3249230	CATCACAGAACCCATTGGT		59	3243663	3243682	TTCGAGCTCTTTATACGGTC		59	NA	
Drosophila melanogaster	50	CG3358	FBgn0033117	FBtr0086166,FBtr0114532	1	2	2	62	2R	2811957	2811975	CTAATAGACGGACGCTGTG		59	2812067	2812085	GATTCCGGCAATAGACTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086204,FBtr0086203	2	2	11	99	2R	2764760	2764778	CAAGGCCTTCATTGAAGTC		58	2763577	2763595	AATGAAGTGTTTGCGACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Eb1	FBgn0027066	FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130	2	5	5	84	2R	2642342	2642416	CAAATCAGGTGATGGATATGC		59	2642460	2642480	TCAATATCCCGCAACTTAGAG		59	NA	
Drosophila melanogaster	50	jing	FBgn0086655	FBtr0114364,FBtr0114363,FBtr0086104,FBtr0114365	3	4	5	187	2R	2506073	2506093	CATGTTTGACTTCTTCGACAC		59	2506242	2506321	ACTCGTCGGAAATGATCTC		59	NA	
Drosophila melanogaster	50	Pld	FBgn0033075	FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997	1	6	6	80	2R	2141751	2142360	GACATTCAGGGTTACTTGGT		59	2142403	2142421	CTCCTTACTAGTTCCAGGC		58	NA	
Drosophila melanogaster	50	l(2)NC136	FBgn0033029	FBtr0086062	1	1	1	81	2R	1548366	1548384	AATGTTCAAGGCCAATCTG		58	1548244	1548321	CCAGGAGTGATGTATTGTG		57	NA	
Drosophila melanogaster	50	CG33347	FBgn0053347	FBtr0086090	2	1	1	122	2R	1243151	1243169	TCCTATTATGGCACCTGTG		58	1243255	1243273	ATGCCATTCTAGATTCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17528	FBgn0032999	FBtr0111275,FBtr0111277,FBtr0111274,FBtr0111276	2	4	4	83	2R	705644	705728	TGGAATATGTAAGTGGTGGT		58	705580	705598	TAATCATAATGCGCGACTG		58	NA	
Drosophila melanogaster	50	CR9337	FBgn0032898	FBtr0081448	3	1	1	61	2L	20863004	20863025	CTACATACCTAGGAGCTATGAG		58	20862910	20862928	AGGATTCGGCTTATAGGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17715	FBgn0041004	FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246	3	6	6	148	2L	22742091	22742164	ATAATGATCATGGCGGGTG		59	22742275	22742294	AATATCTGGCACCCATTCTC		59	NA	
Drosophila melanogaster	50	RpL5	FBgn0064225	FBtr0111129,FBtr0111128,FBtr0111131,FBtr0111130,FBtr0111132	2	5	5	100	2L	22428912	22428930	GTACAGATCGCCTATGCTC		59	22428770	22428849	TAGTTGGTCAATCCAACCTG		59	NA	
Drosophila melanogaster	50	CG1416	FBgn0032961	FBtr0085903,FBtr0085904,FBtr0085905	3	3	3	114	2L	21759359	21760490	AAGAAACTTCATCCAGCAC		57	21760568	21760586	GTCTGTTTGATGCTATGCC		58	NA	
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081442,FBtr0081441,FBtr0081444,FBtr0081447	3	4	8	103	2L	20876931	20876949	ACATCCAAATGATGTCCCA		58	20874424	20875092	CGTGAACAGAAATTGTCTATCC		59	NA	
Drosophila melanogaster	50	CG17544	FBgn0032775	FBtr0081218,FBtr0081217,FBtr0081216	3	3	3	84	2L	19392115	19392133	CAGTGAGGAAGCAATTTGG		59	19391948	19392069	GGAAAGATGCGATATTGATGC		59	NA	
Drosophila melanogaster	50	CG15169	FBgn0032734	FBtr0081136	3	1	1	60	2L	18991909	18991930	TGTGTATCCGAGTTAGATATGG		58	18991951	18991969	GACACAGCTTCTCATTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10641	FBgn0032731	FBtr0081185	3	1	1	74	2L	18978665	18978683	GACTCAAGCAGATGATTGC		58	18978609	18978627	AGATCAGCAAGAACTCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10333	FBgn0032690	FBtr0081072	2	1	1	60	2L	18607946	18607967	CAAATTCTATGGAGATCTGCTG		58	18607988	18608006	TTTCTCCTGTTCCTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5758	FBgn0032666	FBtr0081036,FBtr0081035,FBtr0081037	3	3	3	80	2L	18128003	18128022	TCAGGTGTTCATTATCTCCG		59	18128064	18128147	TCCTTATCCTTGTGCATCTG		59	NA	
Drosophila melanogaster	50	dl	FBgn0000462	FBtr0081005,FBtr0081006	2	2	3	108	2L	17438010	17438160	GGAACCAAGAGATACCTCG		59	17437920	17437938	GTTGTGGTTGTAGTTGCTC		58	NA	
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976	2	4	6	108	2L	17394484	17400407	CTTATACAGATAACAGCAGCG		58	17400477	17400495	CCAATGAAGGCAATCTGTC		58	NA	
Drosophila melanogaster	50	CG31781	FBgn0051781	FBtr0080922	1	1	1	74	2L	16878086	16878106	CCGATTGTCAATCTCTTAGAC		58	16878141	16878160	CATGTGACTTACGACTAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080878,FBtr0080876	3	3	7	189	2L	16483962	16483982	GTCTGCATACGGTTTATACCA		59	16481537	16483811	TTGATCGATAGGCATCTGG		58	NA	
Drosophila melanogaster	50	cact	FBgn0000250	FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847	3	4	4	184	2L	16323076	16323094	CCTTGACAGAGAAGTTCGG		59	16314809	16314829	TAAGATATCAATGTGACCCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7631	FBgn0028945	FBtr0080754	3	1	1	60	2L	15629295	15629314	GTCAAGTACGAAGAAGACGA		59	15629335	15629355	GAATGCTTCCATAGTCATACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sna	FBgn0003448	FBtr0080739	1	1	1	71	2L	15477963	15477981	GATCTATCCCTGAAACGGG		59	15477910	15477928	ATAGTCACGTTTCGGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15277	FBgn0032555	FBtr0080680	1	1	1	69	2L	14908603	14908621	CAACCTCGTGTAACTCCTC		59	14908552	14908570	ATGAGGCAGTCCTTAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15279	FBgn0028886	FBtr0080686,FBtr0080685	1	2	3	160	2L	14847047	14848681	GATGAAAGGTGTTGGAGCT		59	14846905	14846924	AGTTAATGCAGTGGATACCC		59	NA	
Drosophila melanogaster	50	CG18146	FBgn0028939	FBtr0080589,FBtr0080588	1	2	2	72	2L	13981488	13981506	GAATCTGCAGTAGTCCAGG		59	13981684	13981703	GGTATGCAGTAGAACGAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15639	FBgn0032502	FBtr0080477	2	1	1	127	2L	13305734	13305752	TCCGATAAAGATGAGCCAC		59	13305560	13305579	CCATCATGGGATAGATAGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090015,FBtr0090014	1	2	17	197	2L	12726932	12726950	TTATATCAAGAGCGTTGGC		57	12727111	12729943	TATTTGGATAGCACTTGGC		57	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090013,FBtr0090027	3	3	17	91	2L	12731059	12737970	TCTTTATGGTTCTGGCTACC		59	12738024	12738042	GAAGTAGTACAGGAAGGCG		59	NA	
Drosophila melanogaster	50	CG5418	FBgn0032436	FBtr0080382	2	1	1	60	2L	12452130	12452150	CCATTTCGCACTATTATGTCC		59	12452090	12452109	AGAGCTCTGTGATATCTACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SC35	FBgn0040286	FBtr0089899	2	1	2	145	2L	12433696	12433840	CTTAAGGTCGACAATCTCAC		57	12432715	12433589	TCATAGAAGCGAACAAATGC		58	NA	Nonspecific
Drosophila melanogaster	50	Aats-thr	FBgn0027081	FBtr0080333,FBtr0080332,FBtr0080331	2	3	3	63	2L	12104541	12104694	ATACTCGCAAGGAACTCAG		59	12104721	12104739	TTCTCCCAGAAGACATTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14945	FBgn0032402	FBtr0080295,FBtr0080294	2	2	2	162	2L	12051362	12051381	GTCAATGACTTCGATGTGTC		58	12051574	12051595	CCAGTTCATTTCGATACAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12264	FBgn0032393	FBtr0080290	3	1	1	60	2L	12000399	12000419	CCATTATGACGGTGAATAACG		59	12000441	12000459	AGTTTGCCAATCTCATCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	esc	FBgn0000588	FBtr0080325	1	1	1	196	2L	11828900	11828980	TACAAATACGACACCCACG		59	11828358	11828740	AATACTTCATCGGGATCCG		58	NA	
Drosophila melanogaster	50	SCAR	FBgn0041781	FBtr0080148	1	1	1	89	2L	10981421	10981499	TCGAGATGGTATTACTCTACG		58	10981550	10981568	AAGATTGAAGCCACATCCA		59	NA	
Drosophila melanogaster	50	l(2)06225	FBgn0010612	FBtr0110872,FBtr0110873	3	2	3	277	2L	10976255	10976273	CAAGGGATCAGGACTTGTG		59	10975907	10975927	CATTGTAGCCTACAATGTGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	porin	FBgn0004363	FBtr0080183,FBtr0100584,FBtr0080182	2	3	3	60	2L	10848836	10848854	CCATCATACAGCGATTTGG		58	10848794	10848813	CAAAGTTGTAGCCTTTGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486	1	9	10	160	2L	10831340	10831358	GTCACAGGATTATCGGTCG		59	10826070	10830602	TCGAGCAGGAAAGAATCTC		59	NA	
Drosophila melanogaster	50	CG7294	FBgn0032284	FBtr0080128	1	1	1	185	2L	10688981	10688999	ATTCGGTAATCCCTATGGC		58	10688814	10688832	TATCCGTAGAAACCACCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RluA-1	FBgn0051719	FBtr0080040,FBtr0080039,FBtr0080041	3	3	3	80	2L	10464363	10464384	TATATCCATGTTCAAGAGCACC		59	10464242	10464324	CTATGATGAACAACGGAAGTG		59	NA	
Drosophila melanogaster	50	CG5322	FBgn0032253	FBtr0080042	1	1	1	82	2L	10454851	10454962	ACTTATCAAGTACGTCAACG		57	10454788	10454808	CATAAAGATAACACGAGGGTG		58	NA	
Drosophila melanogaster	50	pie	FBgn0005683	FBtr0080046	3	1	1	60	2L	10421834	10421852	CGTGGGTGATACTATGCTG		59	10421792	10421811	ACCAAGCATTTAAGATGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5362	FBgn0032237	FBtr0080050	2	1	1	72	2L	10394060	10394081	CGAGATCAAGAATAAGCAATGG		59	10394009	10394028	GCTTAACTTTGTCTTAGCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CYLD	FBgn0032210	FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069	1	5	5	80	2L	10296852	10296949	CCGTTTCTAAAGCTAAGCTC		58	10296791	10296812	CGGTAATGTTAACTTCTCATCC		58	NA	
Drosophila melanogaster	50	tai	FBgn0041092	FBtr0079794	1	1	1	80	2L	9241542	9241616	TGCTCAAGCTACTAAACGA		58	9241659	9241678	GGGAGTTGTTCATAGAACCT		59	NA	
Drosophila melanogaster	50	CG9555	FBgn0032085	FBtr0079761	1	1	1	90	2L	8992783	8992858	CTTTATCCTTCCATGCCAG		57	8992912	8992930	TAAAGCAATCGAAGACCAG		57	NA	
Drosophila melanogaster	50	fos28F	FBgn0013442	FBtr0079585	1	1	1	60	2L	8181132	8181150	CCAGTTACTCTTTGGACGA		58	8181174	8181192	GATAAGTTGCTGGACAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mts	FBgn0004177	FBtr0079525	2	1	1	156	2L	7830883	7830901	ACAGTCTGGATCACATTCG		59	7831021	7831482	GTTTCCGAAATATCCTGGC		58	NA	
Drosophila melanogaster	50	Gr28b	FBgn0045495	FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458	3	5	5	118	2L	7455130	7455212	TTGTATTTCACGATCAGCG		58	7455030	7455049	TTATTGAAGGTCTCACAGCA		58	NA	
Drosophila melanogaster	50	Tango1	FBgn0031842	FBtr0079296	3	1	2	154	2L	6652557	6653217	AACGGTCAGAATGAAGAGG		59	6653334	6653353	CTGAAGTAGCCGGATAAGAC		59	NA	
Drosophila melanogaster	50	eya	FBgn0000320	FBtr0079334,FBtr0079335	1	2	2	231	2L	6528505	6528585	TATCGTGGAAATGTTGGCA		59	6528292	6528310	TCTCGATGTTGAAGATGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6907	FBgn0031711	FBtr0079096	1	1	1	61	2L	5524886	5524904	CAAGACTACCTTGTGGGAC		59	5524929	5524947	AGAACTCCTCGTCAATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14023	FBgn0031698	FBtr0113022,FBtr0079081	2	2	2	61	2L	5323376	5323394	AATTACAAGGACAGCAGCA		59	5323216	5323351	GTTGTTGAAGCAATCAGGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14033	FBgn0046776	FBtr0079065	1	1	1	118	2L	5243823	5243841	TTCAAAGGACTTGGACACC		59	5243923	5243941	TGTTCAGCTCTGTGTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pgant5	FBgn0031681	FBtr0079026,FBtr0111024	2	2	2	113	2L	5077708	5077787	CTCAACTTCCGATGGTACC		59	5077613	5077633	CTTATCGATGGAGAACAGACC		59	NA	
Drosophila melanogaster	50	His3.3A	FBgn0014857	FBtr0079011	2	1	2	291	2L	5055489	5055507	GGACTTCAAGACCGATCTG		59	5055899	5055919	ATAGACCTAAGTACTAAGCGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	BG642163	FBgn0083938	FBtr0110769	2	1	1	60	2L	4642516	4642534	GAATTCGCCTCTTTACCCT		59	4642553	4642576	GATATCAGGTATACTCTCACTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k05819	FBgn0022153	FBtr0077433,FBtr0077432	1	2	2	85	2L	4396834	4396852	ACAGATTGGATTCACCGAC		59	4396901	4396981	CAACATCAGGTTGCAAGTG		59	NA	
Drosophila melanogaster	50	CG3714	FBgn0031589	FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077482,FBtr0077479	2	5	6	115	2L	4190819	4192646	GAGAAGTCATTCAGGAGTGG		59	4190723	4190741	GAAAGATAGGCCAGATCCC		59	NA	
Drosophila melanogaster	50	CG12400	FBgn0031505	FBtr0077617	3	1	1	143	2L	3145370	3145388	AGAAGAGGAACGAGTACCT		59	3145190	3145208	TTAGATCCACTTAGCGCAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Pgk	FBgn0003075	FBtr0077739	2	1	1	72	2L	2748090	2748108	GAACATCAAGTACACCCTG		57	2748036	2748054	TAGGAAGATCACATCCTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15385	FBgn0031397	FBtr0077845	1	1	1	81	2L	2211712	2211785	ACTTGGTCAACAGGTATCG		59	2211649	2211668	ACCTTGTTCCAGTACATGTG		59	NA	
Drosophila melanogaster	50	GlyP	FBgn0004507	FBtr0100485,FBtr0077828	1	2	2	76	2L	2134900	2134918	CAACAACCACGTAAACACG		59	2134957	2135046	CATCGTTGAAGAACTTGAGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	dpr3	FBgn0053516	FBtr0091458	1	1	1	104	2L	2066584	2066749	ATAAATCGGTATCCTGGATACG		59	2065725	2065743	AGTCCTTCGATTCAGTCAC		59	NA	
Drosophila melanogaster	50	CG7337	FBgn0031374	FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012	1	5	5	129	2L	1937464	1937482	CACAATACGGAGAATGGGA		59	1937575	1938517	TATGGCCTACATTCTCCAG		58	NA	
Drosophila melanogaster	50	CG17652	FBgn0031361	FBtr0077904	3	1	1	144	2L	1731808	1731890	TCAAATCGATGACCAAAGAC		58	1731683	1731701	TTGGAGGCTTTAGATGGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31926	FBgn0051926	FBtr0077931	2	1	1	60	2L	1496879	1496898	GCAACTCCTTGTTGATTCTG		59	1496918	1496939	ATATCGTAGGTCGTATAGTAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GABA-B-R3	FBgn0031275	FBtr0078001	1	1	2	93	2L	755289	755839	TACTTAGGGAGACGGACAC		59	755896	755914	AACATTCGAAGCCTGTAGG		59	NA	
Drosophila melanogaster	50	baz	FBgn0000163	FBtr0074388,FBtr0111000	3	2	2	86	X	17085335	17085353	ATTTGAGTCCGGAGAAGAG		58	17085400	17085482	GATTGCTCCATCTATTCATCTC		58	NA	
Drosophila melanogaster	50	CG4756	FBgn0030788	FBtr0074331	3	1	1	61	X	16682608	16682629	GAAACACTTCAAGACAATACCC		59	16682650	16682669	CCATGTACACGAAGAATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	caz	FBgn0011571	FBtr0074217,FBtr0074218	3	2	2	119	X	16186669	16186931	TGCAATAGATGTAAGACTCCC		59	16187012	16187030	GGATCCACGATCATTTCCT		59	NA	
Drosophila melanogaster	50	CycD	FBgn0010315	FBtr0074163,FBtr0074164,FBtr0074165	2	3	3	61	X	15802049	15802131	TTAAATGGGAGCTGTATGTG		57	15802007	15802025	CAAGGGAGTCACAGATGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15734	FBgn0030374	FBtr0110815,FBtr0073636	2	2	2	73	X	11980918	11980936	GCACACCTATCAAGTTTGG		58	11980783	11980884	ACTTATCGGGCGAATAATAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15202	FBgn0030271	FBtr0073438	1	1	1	128	X	11037217	11037300	GAAATTAGCTATTGCGGTCG		59	11037391	11037409	GATGTAGTTGCTCTCGGAC		59	NA	Nonspecific
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0110967,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	3	9	9	105	X	10691466	10691555	TTCTACAGTGTACAGTCTGC		59	10691380	10691398	GTTGCAATTGTTCTTTGGC		58	NA	
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071474,FBtr0071478,FBtr0071477,FBtr0071475	2	7	7	97	X	10172050	10172137	CCGAGGCCTTTAGATTCAG		59	10171971	10171991	AAAGTAGCTCTCGAAAGTCTC		59	NA	
Drosophila melanogaster	50	CG1958	FBgn0029940	FBtr0071046	1	1	1	60	X	7161670	7161692	CTATAACTTCTCTGATGTGGAGG		59	7161712	7161730	CTTGAGATACCTAGCAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17717	FBgn0029877	FBtr0070944,FBtr0070943	3	2	2	159	X	6484266	6484349	TATCATCTTGCAGCAGGTG		59	6484472	6484490	GAGCATAAATCGTGTGGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15767	FBgn0029809	FBtr0070813	1	1	1	60	X	5684164	5684182	CTTAAGGTGTCCCAGTACG		59	5684204	5684224	GTTAAACACCTCATTCTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11473	FBgn0029779	FBtr0070857	3	1	1	123	X	5523777	5524074	TATTGTGGGATTCATCAGGG		59	5523673	5523691	GATAATGCTGAACACGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11596	FBgn0023522	FBtr0070318,FBtr0070320	3	2	3	177	X	1823042	1823060	TCCATTCGATGAAGCTGAC		59	1823198	1823292	TATATCCTTCAGCTCGAAATCG		59	NA	
Drosophila melanogaster	50	CG41520	FBgn0085665	FBtr0114112,FBtr0114111	3	2	2	84	U	1352854	1362604	GGCAACAAACGATATGCTC		59	1362649	1362670	CCTCATATCCGTCTATTTCCAG		59	NA	
Drosophila melanogaster	50	CG31524	FBgn0051524	FBtr0085684,FBtr0110860	1	2	2	81	3R	26339150	26339229	CGAAAGGAGAAATGAAGAAGG		58	26339089	26339110	CTGGAATATTTCCAGATCATGG		58	NA	
Drosophila melanogaster	50	CG10513	FBgn0039311	FBtr0114505	2	1	1	62	3R	21101884	21101902	TACATTCCCACATTGAGGC		59	21101775	21101858	TGTGACAGCAAAGAATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18410	FBgn0039226	FBtr0084741	2	1	1	251	3R	20625025	20625100	AAAGAGTCCTGACAATGACC		59	20624248	20624266	CAATCAATCCCTTGATGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6982	FBgn0039014	FBtr0113267,FBtr0113268	2	2	2	60	3R	18555467	18555542	TGATGCTTGTATCCTTGCT		58	18555564	18555584	GCAAAGCATACTGGATATACG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31219	FBgn0051219	FBtr0113400,FBtr0083783	1	2	2	60	3R	15477508	15477526	ATCGAATACGATATCGCCC		59	15477550	15477680	TGATTCCTGTCCTATAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31222	FBgn0051222	FBtr0083705	3	1	1	60	3R	14773673	14773691	CACGCTCTATATTTCCGCT		59	14773714	14775325	CGAGCTGCATAGAATAAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cha	FBgn0000303	FBtr0089368,FBtr0089367	2	2	2	222	3R	14549779	14550862	GATTCCCTGACACTCTACC		58	14554505	14554524	TTGAGCCAGTAGTAATAGGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG4053	FBgn0038482	FBtr0083416	3	1	1	60	3R	12957539	12957557	CTAGTCCATTGCTTGTACG		57	12957497	12957515	CATGGATCAACGCTATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(var)3-7	FBgn0003598	FBtr0082736	1	1	1	86	3R	9091970	9091988	GATTACCAGCTTCCTACGG		59	9092038	9092124	CGAATATCTGAAGAGCCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082457	3	1	6	67	3R	7417027	7417238	AAGCTAAAGATCCGAGAGG		58	7416978	7416996	GAATACTCGTTGGCTACGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17734	FBgn0037890	FBtr0082360	2	1	2	268	3R	7068719	7069505	GGGTATTACCGGATTCGTG		59	7068209	7068227	TAGCCGATGTCATCTTGTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Ugt35a	FBgn0026315	FBtr0082374	3	1	1	130	3R	6997999	6998084	AAATAATGGCGGCATTTGG		59	6997887	6997905	TAAATCCTTTACAGCCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14696	FBgn0037853	FBtr0082332	1	1	1	106	3R	6709204	6709281	GCTCGAGTATAAGGAACCC		59	6709116	6709134	AATAAGAGGTGCTCACGTC		59	NA	
Drosophila melanogaster	50	Rel	FBgn0014018	FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338	1	4	4	135	3R	4872362	4872380	ATATTCGAGGAACTGTGCA		58	4871949	4872263	CCTGGTTCAAGTTCATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8007	FBgn0037600	FBtr0081876	2	1	2	221	3R	4446100	4446119	ATGCTTCTACATTCCACTGG		59	4452034	4452052	TGATTGTGAGCAGAGTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2846	FBgn0014930	FBtr0081763	3	1	1	186	3R	3738577	3738659	TCCCAACAGCTAACTTTCC		59	3738409	3738428	TTAAAGTCGTGTAGCATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1024	FBgn0027514	FBtr0081733	2	1	1	69	3R	2205787	2205805	TACATATGTCCGGAATGCG		59	2205673	2205754	GTTTCGTGTTCAGATGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL35A	FBgn0037328	FBtr0078769	2	1	1	261	3R	1291742	1291885	CCATCCTCAAGATTGAGGG		59	1291431	1291451	TAAATCCTTGATGGGTACAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7370	FBgn0037133	FBtr0078436	2	1	1	163	3L	21763097	21763115	CACCTACACTCACTGACAC		59	21763337	21763357	GACCAGTATTGTAGTAAGGCA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG10586	FBgn0037036	FBtr0078335	1	1	1	62	3L	20949266	20949284	CACGGTATCAGTACCTGTG		59	20949109	20949240	GAGACTGATTCCCGATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17145	FBgn0036953	FBtr0074823	2	1	1	112	3L	20214958	20215037	AAATTTGGTGCCATACTGG		58	20215113	20215131	CGGATCACCGTATTATTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	serp	FBgn0052209	FBtr0074953	2	1	1	91	3L	19698970	19698988	CGATGGAAACTGCATTGAG		59	19695587	19698915	CGTTGTCGATATCACAGGT		59	NA	
Drosophila melanogaster	50	CG13053	FBgn0040801	FBtr0075480	3	1	1	216	3L	16252442	16252526	ATGCGCAATTATCTCTGGT		59	16252244	16252262	GATTGGCATACGGATAGGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7257	FBgn0036224	FBtr0076040	2	1	1	113	3L	11935814	11935904	TCTTGAAGGTCGTTTCCTC		59	11935978	11935999	CCATGAATATGATACATGGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11726	FBgn0036156	FBtr0076172	3	1	1	60	3L	11388485	11388503	GAGGAACTCACCATTTCCT		58	11388527	11388545	TATAGGATTATCCCTGCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL12	FBgn0011787	FBtr0076511	1	1	1	80	3L	8950443	8950461	GTGAAGAACCTACTCGAGG		59	8950505	8950523	GTCCTCCTTAACGATGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13309	FBgn0035933	FBtr0076582	1	1	1	60	3L	8804031	8804123	GGCAATATGTGAACTGTTACAC		59	8804143	8804162	GGACAAGTGTACACATTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED4	FBgn0035754	FBtr0076889	3	1	1	203	3L	7243016	7243034	CTATCCCACGGACATTGAG		59	7242831	7242850	CCGAGATTCCAGTTAAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14829	FBgn0035751	FBtr0076893	2	1	1	60	3L	7230612	7230697	TAGTCGTTCTACTCACACCT		59	7230571	7230589	GCTAAAGCCTCCTTGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10063	FBgn0035727	FBtr0076935	2	1	1	60	3L	6965417	6965435	CAAATGGAGTAAGTCGGTG		58	6965313	6965394	ATTCAATGTGGAGTAGTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32240	FBgn0052240	FBtr0073336	3	1	1	238	3L	4381319	4381395	CATTTGTGACGGTTCTCAG		58	4381036	4381054	ATTCTTCATGTACTTGGCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	FucTD	FBgn0035217	FBtr0072693	1	1	1	160	3L	1417386	1417460	GATGACTGCAGTCACTACC		59	1417584	1417602	CTAATGTACGAGTGGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scf	FBgn0025682	FBtr0089942,FBtr0089940,FBtr0089941	2	3	3	97	3L	1299198	1299334	ATGGAGTCAGCTACAAGAG		58	1299395	1299413	GGTAAACTCATCCTTGGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13908	FBgn0035178	FBtr0072618,FBtr0113121	3	2	2	131	3L	987428	988755	GAAGGATTGTTCGTTCCAC		58	988848	988868	TACAGTGTACGTATTCGTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4050	FBgn0020312	FBtr0071637,FBtr0071638	3	2	2	102	2R	17012649	17012668	TTATCAACCTGGCGAATCTC		59	17012506	17012585	GCTTGAACATAGTCACTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Obp57c	FBgn0034509	FBtr0113099,FBtr0086292	3	2	2	136	2R	16391213	16391293	GGTCTCCATACAGAGTCTC		58	16391393	16391411	TATTCTCGAGGTCATCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wbl	FBgn0004003	FBtr0086510	2	1	1	231	2R	15137588	15137810	GGAGAACTGGAGAACAAGG		59	15138002	15138023	GGATATTGGCATAGTTCTTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10915	FBgn0034308	FBtr0086746	3	1	1	79	2R	14048950	14048969	TGGCAATCTGATATCAAGGG		59	14049011	14049029	TTTGCTGCTCAATGATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	olf186-F	FBgn0041585	FBtr0086795	1	1	5	155	2R	13731906	13738566	CCAGCAGAAATACAGACGT		59	13738685	13738703	ATCACTGCAGAACTTCTCG		59	NA	InUTR
Drosophila melanogaster	50	RhoGAP54D	FBgn0034249	FBtr0086900,FBtr0086901	2	2	2	100	2R	13477485	13477504	TAATAGTCCCACAGAGACAC		58	13477351	13477422	GGGTGAGATTCTTCTCCAG		59	NA	
Drosophila melanogaster	50	CG18432	FBgn0034238	FBtr0086943	3	1	1	61	2R	13428267	13428285	ATCAACGAATGCATTGGAG		58	13428309	13428386	AGCCATATGTTGAGGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30463	FBgn0050463	FBtr0113380,FBtr0113379,FBtr0087112,FBtr0113381,FBtr0087113	3	5	5	185	2R	12568513	12568531	CATATTCCGGAAACGTTCG		58	12566562	12566645	CACTTGAGATCGTTACGGA		59	NA	
Drosophila melanogaster	50	CG15712	FBgn0034131	FBtr0087127	1	1	1	60	2R	12372543	12372561	AGGCTTTGAGGGATAAGGA		59	12372446	12372519	AGATCTCTGGAAAGTCTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shot	FBgn0013733	FBtr0087619,FBtr0087617,FBtr0087620,FBtr0087616,FBtr0087621,FBtr0087618	3	6	6	100	2R	9757615	9757633	TACACGATGAGGTCAAACG		59	9757468	9757551	CTGGGAGTCTCCAAATCTG		59	NA	
Drosophila melanogaster	50	CG33137	FBgn0053137	FBtr0087733	2	1	1	60	2R	9063117	9063207	AATCCTCAAGAAGGACTACAG		58	9063229	9063247	GTTTATCACGACGTCTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7745	FBgn0033616	FBtr0088119	3	1	1	60	2R	7196525	7196544	CCCGTATTCAACTAAATGGC		58	7196567	7196585	CCAAAGTGACTACCATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp49a1	FBgn0033524	FBtr0088311,FBtr0088313,FBtr0088312	3	3	3	81	2R	6338171	6338266	GTAAAGGAAACTCTACGAATGC		59	6338111	6338129	GGTAACCATTGATGACAGC		58	NA	
Drosophila melanogaster	50	brp	FBgn0086376	FBtr0111001,FBtr0113488	1	2	2	182	2R	5424065	5424083	AAGAAGCTCATGGATACGC		59	5424438	5424530	GATCTTTAAGGCTTGTTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	Pdk	FBgn0017558	FBtr0112892,FBtr0088508	2	2	2	124	2R	5319920	5320002	AAATCAGCACACCCTTCTC		59	5320090	5320108	ATAGGAATCGCGCATTCTC		59	NA	
Drosophila melanogaster	50	CG34431	FBgn0085460	FBtr0112732	2	1	1	60	2R	3833371	3833389	CGATTCAACATATCCTGCT		57	3833413	3833431	TTCGTTGGTTCTGATTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13086	FBgn0032770	FBtr0081197	2	1	1	60	2L	19365130	19365148	GATAACCGCTTCTACTGGA		58	19365172	19365190	CCCAGTTGGAGTAGTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10431	FBgn0032730	FBtr0081134	3	1	1	146	2L	18977189	18977276	TCTTGGAGATGATCTGAATCTC		59	18977382	18977401	TAAGTAACCTTGACTAGCGC		59	NA	InUTR
Drosophila melanogaster	50	tos	FBgn0015553	FBtr0081131	1	1	1	67	2L	18681088	18681161	TCTTGAGGTAGATGACGAC		58	18681039	18681057	TAAACATGTGCCTGAAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15149	FBgn0032659	FBtr0081027	1	1	1	77	2L	18008269	18008287	AATTTCGCGAAGTATCCGA		59	18008328	18008414	GAGCAGGATCTTTCTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15140	FBgn0032631	FBtr0112773	1	1	1	60	2L	17286557	17286678	CTACTTCAGGTGAAACCCT		58	17286702	17286720	ATTCCATATCCTTGCTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31805	FBgn0051805	FBtr0080958	2	1	1	83	2L	16898807	16898826	TAAACAGGCGAGTATCAAGG		59	16898676	16898762	AAACTTTCGCTATCGAAGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13258	FBgn0032582	FBtr0080853	2	1	1	77	2L	16292713	16292960	GAATTGTGCTCTTAGCTGC		59	16292654	16292672	GGATCTTCACCCAATCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5421	FBgn0032434	FBtr0080383	3	1	1	75	2L	12446821	12446839	GGACATCACTGTCTACTCC		58	12446613	12446782	GTCTTGCCACAGGATATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6388	FBgn0032430	FBtr0080367	2	1	1	121	2L	12429629	12429647	AGTTCGATGAACTCCATCC		59	12429730	12429807	GTCACCAATCATAATAGTGGC		58	NA	
Drosophila melanogaster	50	CG6192	FBgn0032341	FBtr0080230	3	1	1	83	2L	11104383	11104402	TATCCAATCCGCAGATTCTG		59	11104248	11104266	TAGATGACTCAGCTGAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32829	FBgn0052829	FBtr0079370	2	1	1	65	2L	6915984	6916002	AGGACGAGTACATCAAGGA		59	6915937	6915955	ACTTCTTATGATGTCCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9232	FBgn0031845	FBtr0079322	1	1	1	80	2L	6667004	6667099	GTTGTTATCGACGAGTGGA		59	6666942	6666962	TCCCTTGTTCTCGAATATCTG		59	NA	
Drosophila melanogaster	50	l(2)k05819	FBgn0022153	FBtr0077433,FBtr0077432	1	2	2	85	2L	4396834	4396852	ACAGATTGGATTCACCGAC		59	4396901	4396981	CAACATCAGGTTGCAAGTG		59	NA	
Drosophila melanogaster	50	lectin-22C	FBgn0040105	FBtr0077859	3	1	1	69	2L	2036510	2036529	AAATGTACGATTACCCATGC		58	2036043	2036481	GAATTTAAATCTTCCTCCTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31920	FBgn0051920	FBtr0078097	2	1	1	74	2L	328638	328656	GATCCCAAAGATCCACCTG		59	326051	328600	ACCACAAACTTCATCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dsp1	FBgn0011764	FBtr0089259,FBtr0089261,FBtr0089260	3	3	5	242	X	16228438	16230333	CAAATACAGCAATTGGCTG		57	16230539	16230557	ATAATCATAGCCCGTGGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	fw	FBgn0001083	FBtr0112806,FBtr0073580	1	2	2	97	X	11888948	11889034	ACCTATAAGATTGGAGCACTG		59	11888871	11888889	CTCCATTGTCCACTATCCG		59	NA	
Drosophila melanogaster	50	CG1561	FBgn0030317	FBtr0073539,FBtr0073538	3	2	2	60	X	11477263	11477282	AGCATATGAGGTCTTTCTGC		59	11477222	11477243	TCCGATTATCTTCCACTTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1745	FBgn0030301	FBtr0073499	1	1	2	215	X	11351593	11351611	GAGGATCAACAAACAGCAG		58	11351790	11352273	AAAGTTGGGTTCGGATAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Vago	FBgn0030262	FBtr0073427	3	1	2	179	X	10983615	10983633	TATCGGTGAAGTCTTCACG		59	10983842	10983860	CTCTTGCACTCATACAGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475	3	6	7	170	X	10173218	10217611	GAAGGTCAAAGAGATGATGG		57	10173067	10173085	AGTCCCATAATGTACAGGG		58	NA	
Drosophila melanogaster	50	fs(1)h	FBgn0004656	FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119	2	5	5	117	X	7944306	7944477	CAAGAAAGATGAGTCCGCT		59	7944207	7944225	ACTCGAACTGCTATCACTC		58	NA	
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	3	12	15	239	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978621	6978640	AATTGATCTACCTCTGTGCA		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070740	3	1	4	66	X	4959928	4959946	CCAAACAATAGTCTCGACG		58	4960135	4960153	CCTCGTCGTACTCAATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	trol	FBgn0001402	FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964	3	4	7	81	X	2386428	2386446	TAGTAATGATCGCAGACCG		58	2384862	2386383	TCCAACGTCGTTATTCTCC		59	NA	
Drosophila melanogaster	50	ttk	FBgn0003870	FBtr0085827,FBtr0085825,FBtr0085829	1	3	6	128	3R	27554189	27558647	AACAGCACTTCCGTTACTC		59	27558739	27558757	GGAAATCGTTTCCGAAGGA		59	NA	
Drosophila melanogaster	50	CG33203	FBgn0053203	FBtr0114574,FBtr0085348	1	2	2	87	3R	24700983	24711989	TACTGACACATGCCATACC		59	24700914	24700932	AAGGACAGGAACTTGTAGC		59	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	1	5	6	80	3R	20045369	20045388	ATGAACATCTACAACGAACC		57	20025660	20045326	TGGATTCACGGTAAATGAC		57	NA	
Drosophila melanogaster	50	glec	FBgn0015229	FBtr0084157	1	1	1	60	3R	17677576	17677594	GTACAATGTTCGCAAGACC		59	17677534	17677553	GTTGTAACCATTCTTGACGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6800	FBgn0038902	FBtr0084132	1	1	1	82	3R	17602704	17602775	AAGATACGGTTTCCCAACTC		59	17602820	17602838	ACCAGATTGATTTCCACCG		59	NA	Nonspecific
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642	3	13	13	131	3R	14261181	14261201	ATGTCAGATACTCAGAGATGC		59	14260763	14260781	TGTTATCTGTGAGACCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31302	FBgn0051302	FBtr0083097,FBtr0083098,FBtr0083096	2	3	3	129	3R	11211327	11211405	CCCTAGATTTGGACACTCG		59	11211498	11212200	TCCTCTGGAGGATCATAGG		59	NA	
Drosophila melanogaster	50	rdx	FBgn0086364	FBtr0082871	2	1	5	180	3R	9796820	9797003	ATACAAGAGCCAAGATTGC		57	9796336	9796677	ATTTAACCACTTTGACCTGC		58	NA	
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082802,FBtr0082801,FBtr0082806	3	3	8	97	3R	9488692	9488710	ATCATCCTCTCGTTATGGC		58	9488770	9491190	TGTAATCCTTGAGATCCTGC		59	NA	
Drosophila melanogaster	50	CG9471	FBgn0037749	FBtr0082160,FBtr0113211	2	2	2	80	3R	5597058	5597076	TATTATTGGAGGAACCGGC		59	5596941	5596960	TATAGCAATTTCACCGACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17816	FBgn0037525	FBtr0113203	3	1	3	80	3R	3691466	3693763	AAGCTACTCTACATGAGTTGG		59	3691136	3691427	CCATAATGGTCACTTGTTTCTC		59	NA	
Drosophila melanogaster	50	Pbprp4	FBgn0011282	FBtr0112867	1	1	2	94	3R	3076873	3076908	TAACCAGCATGATCCTTCG		59	3076797	3076815	ATAGTCCGTCATCAAACCG		59	NA	
Drosophila melanogaster	50	CG2017	FBgn0037391	FBtr0078664,FBtr0114518,FBtr0078663,FBtr0078662,FBtr0078661	3	5	5	93	3R	1685467	1685486	ATATGTTTAGGCACATGCAC		58	1685182	1685200	TTGACCACATTACCCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1208	FBgn0037386	FBtr0113197,FBtr0113196	2	2	2	118	3R	1662757	1662830	TTTAATTGGTATCGCAACGG		58	1662911	1662929	CAATCGTAAGGAGCAACTG		58	NA	
Drosophila melanogaster	50	Eip75B	FBgn0000568	FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149	1	4	4	110	3L	17948398	17948416	AGATGGATATCGTTGGCTC		58	17948141	17948324	TGAGTATTCCGATCTGCTG		58	NA	
Drosophila melanogaster	50	Pdi	FBgn0014002	FBtr0075650,FBtr0075648	1	2	2	60	3L	15131457	15131477	CATTAAGATCTCGTCCTTCCC		59	15131417	15131435	GATGACCTTGTTGTCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14151	FBgn0036089	FBtr0076280	2	1	1	177	3L	10621213	10621231	TTATACTGCTCTACGGCCT		59	10620992	10621011	CTATACTTCTCATCGGGAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cdc6	FBgn0035918	FBtr0076647	1	1	1	60	3L	8626332	8626350	CAAACCAATGAGGAAACCC		58	8626290	8626309	TTTGGTATTTGTTGCGTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10147	FBgn0035702	FBtr0076987	1	1	1	60	3L	6480273	6480294	CGAGTCTTAAGAAACATATCCG		58	6480234	6480252	TAGCTGCAGGCATAATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr65Az	FBgn0035686	FBtr0076996	3	1	1	75	3L	6154250	6154271	GATATACCCATCATTAAGCTGG		58	6154363	6154381	CGTTTCCAGTCTCGTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32415	FBgn0052415	FBtr0077111	1	1	1	60	3L	5798334	5798352	TGACAACCTTCAAGAACCA		58	5798376	5798394	GTCCATAGACCATGTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11347	FBgn0035542	FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141	1	6	6	225	3L	4419447	4419465	TATTAGGTCCACCCAGGAG		59	4419654	4419748	GTTCTTGCTCTTCTGACTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG12011	FBgn0035257	FBtr0072764	3	1	1	60	3L	1695335	1695353	AGCATCTACAACAAGTTCC		57	1695376	1695395	ATGTGTTTACCACAGAAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7955	FBgn0035244	FBtr0072754,FBtr0072756,FBtr0072755	2	3	3	107	3L	1621163	1621181	CTTGTTCAAAGGAGCTGTG		58	1621252	1621329	CTAGCAATGCCATATCCCA		59	NA	
Drosophila melanogaster	50	zip	FBgn0005634	FBtr0072398,FBtr0072399	1	2	4	100	2R	20885209	20885808	TGCTCATTAACTTCTCGGTC		59	20885128	20885149	CATCTTCAATCCATTGACTACC		58	NA	
Drosophila melanogaster	50	CG5819	FBgn0034717	FBtr0071811,FBtr0071812	2	2	2	154	2R	18183159	18183178	CTTGGTCCATCATAATGCTG		58	18183295	18183370	GTTGAGATCTCGTATGCGT		59	NA	
Drosophila melanogaster	50	exu	FBgn0000615	FBtr0086243,FBtr0086242,FBtr0086244	3	3	3	134	2R	16557493	16557511	TATGCTGAAGTCGATGCAG		59	16557294	16557313	TAGATAAGCACAATCCCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457	1	11	15	108	2R	15365201	15366256	TTCACTCTGGTCAAACCAG		59	15366328	15366346	TTGGAGAAGAAGCTCATGC		59	NA	
Drosophila melanogaster	50	Fak56D	FBgn0020440	FBtr0114605	3	1	5	175	2R	15319735	15319817	AGAATTGCTAAGATCCTGCTC		59	15319580	15319598	ATGAGTGGTTCGACTTCAG		59	NA	
Drosophila melanogaster	50	cer	FBgn0034443	FBtr0086551	1	1	1	78	2R	15284038	15284056	CAAGAACTACGAGGCAGAG		59	15283978	15283996	ATTGTGTTCCTCAATCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6553	FBgn0033880	FBtr0087642	3	1	1	60	2R	9742773	9742792	ATACCAACGACTACAGTCAG		58	9742732	9742752	TCCTATGGATACTACTTTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr47Ef	FBgn0033603	FBtr0088186,FBtr0088187	2	2	2	60	2R	7157262	7157283	AAGGGATCTGAGAATGAAATCC		59	7157223	7157241	CTTCGGGATTTGTGTAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12391	FBgn0033581	FBtr0088205	2	1	1	60	2R	7036590	7036608	GTCGAGGAAATTGAACCAG		58	7036548	7036568	CAGTGATTAGTTCACCTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	3	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421093	TAGTAAGGTAGCAAAGTAGGGA		59	NA	
Drosophila melanogaster	50	boca	FBgn0004132	FBtr0088953	1	1	1	60	2R	3454096	3454115	CCAAGAAGTTCAAGGAGGAG		59	3454055	3454073	CTGTAGTCGCGTATATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7843	FBgn0033062	FBtr0086021,FBtr0086020,FBtr0086018	3	3	3	212	2R	1969490	1969508	TATCTACGCGATCCTAAGC		58	1968905	1969243	TTCCAAAGGCAATTCTCTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG17665	FBgn0039997	FBtr0111269,FBtr0111268	1	2	2	83	2R	124473	124492	AGTTTGAGACATACGAACAG		57	124352	124429	GCAATATGTCCTGTATACACC		58	NA	
Drosophila melanogaster	50	vig	FBgn0024183	FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720	1	4	4	81	2L	15065447	15066946	GATAGAACTGGTGTGAAGTC		57	15065385	15065403	CATCAATAGCCTCCTTGAC		57	NA	
Drosophila melanogaster	50	CG33309	FBgn0053309	FBtr0080674,FBtr0100163	3	2	2	60	2L	14812256	14812274	CAAGAGGCAATGTTTGCTG		59	14812295	14812316	TATAGTGGTTCACTTCTATGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wb	FBgn0004002	FBtr0080620,FBtr0080619	1	2	2	84	2L	14321170	14321188	CTGATAGGAAGAGCAGCTC		59	14321236	14321318	CTCGACAGTTCTGACAGAC		59	NA	
Drosophila melanogaster	50	CG15639	FBgn0032502	FBtr0080477	1	1	1	127	2L	13305734	13305752	TCCGATAAAGATGAGCCAC		59	13305560	13305580	CCATCATGGGATAGATAGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31910	FBgn0051910	FBtr0079304	3	1	1	60	2L	6744984	6745002	CGATAGCCATCATAGAAGC		57	6744942	6744961	ATAGTTGAATATGTCGACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9664	FBgn0031515	FBtr0077607,FBtr0077606,FBtr0077605	3	3	3	82	2L	3292104	3292184	CCAGAGATATGTTTGCTGTC		58	3292041	3292059	TATCTGCCAGTAGACAACG		58	NA	InUTR
Drosophila melanogaster	50	CG10597	FBgn0030832	FBtr0074398	3	1	1	116	X	17125080	17125234	ATGCATCACAAACCATTGG		58	17124982	17125003	CGAGACTAACTCTTTAAGATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14414	FBgn0030571	FBtr0073931,FBtr0073930,FBtr0073932	1	3	3	219	X	14475705	14475797	TATGATGAAACGCAGAAGC		58	14475980	14475998	CGCGATCCTTGTTAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rbp1-like	FBgn0030479	FBtr0073790	2	1	1	162	X	13278472	13278490	CGTGTCGAAATGTCATCAG		58	13275072	13278346	GTGATCTATAGCGTCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dredd	FBgn0020381	FBtr0114561,FBtr0114560,FBtr0114559	3	3	3	84	X	528214	528232	TACTACAAACCGAAGTTGC		57	528080	528169	CTATCCTAAAGAGCTCATTTGG		58	NA	
Drosophila melanogaster	50	CG17267	FBgn0038821	FBtr0114503,FBtr0083931	3	2	2	71	3R	16564042	16564326	TTGGCTCCAGAAACTATCC		58	16563989	16564007	TATAGCGCCTTCTGTATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yrt	FBgn0004049	FBtr0082793,FBtr0114376,FBtr0114375	3	3	4	172	3R	9257515	9257594	ACTGTGAAATTGGATCCAG		57	9257227	9257246	CTATCTTTATCCGACAAGCC		57	NA	
Drosophila melanogaster	50	CG2023	FBgn0037383	FBtr0078666	2	1	1	82	3R	1650016	1650088	ATACACGACATCCTGAACAG		59	1649953	1649971	ATAGCAGACAGTTTGGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdc6	FBgn0035918	FBtr0076647	1	1	1	60	3L	8625389	8625485	AGCAAGACACTCTAAAGCC		59	8625347	8625365	TAGACCTTGTTCAGCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fd59A	FBgn0004896	FBtr0071898	2	1	1	80	2R	18756377	18756716	GCTTTCCATACTACAAGGAC		57	18756759	18756777	TTATGAAGCAGTCGTTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fak56D	FBgn0020440	FBtr0086543,FBtr0114606,FBtr0086544	2	3	5	82	2R	15323971	15324060	AAATGAGATTAACTCCGAGGAG		59	15323910	15323930	CCTTGACATTAAACCGAACAG		59	NA	
Drosophila melanogaster	50	CG9000	FBgn0034176	FBtr0087059	3	1	1	63	2R	12889303	12889321	TCGTAGTCATCGAGAATGC		59	12889107	12889276	GTTTGGTACACTTTCACCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rya-r44F	FBgn0011286	FBtr0088640,FBtr0088638,FBtr0088637,FBtr0088639	1	4	4	81	2R	4772298	4772385	GTTGTTAACGGCACTATTGG		59	4772426	4772447	AGTACTTAAGAATCAGCTCCAC		59	NA	
Drosophila melanogaster	50	CG3403	FBgn0033094	FBtr0086141	2	1	1	87	2R	2583397	2583415	ACAAGTACTTCCCTAGCAG		58	2583268	2583286	GAGAAGATGCGATACACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9243	FBgn0032926	FBtr0110945	3	1	2	191	2L	21166944	21167019	GAGTAGATATACAAATGCGACG		58	21166438	21166457	TATTCCCGAAATAGTCCTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)05714	FBgn0010607	FBtr0079051	1	1	2	70	2L	4970769	4971059	GCCAAGAATATGATTAAGGGTG		59	4970720	4970738	GAAATTATGGAGGCCTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR32525	FBgn0052525	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:R:12Ea	FBgn0011948	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG12685	FBgn0040910	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-34	FBgn0064158	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG13814	FBgn0036960	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30406	FBgn0050406	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30333	FBgn0050333	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:I:49Fa	FBgn0011881	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG40485	FBgn0069973	FBtr0111190,FBtr0111189	1	2	2	60	X	22363899	22363920	GACATTCTTATCAATAACGCCG		59	22363860	22363878	CTACCGACATAGTCAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14619	FBgn0031187	FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350	3	5	5	124	X	21868684	21868703	TTATGAACTCGGTCATCCAG		59	21868790	21868868	GAGTTTGGCAAATTCGTGG		59	NA	
Drosophila melanogaster	50	pen	FBgn0015527	FBtr0077223	2	1	1	195	X	21218449	21218567	CTTAATCACATTCAAGGCGAG		59	21218274	21218292	TGCTCTCGACATAAAGCAG		59	NA	
Drosophila melanogaster	50	CG32521	FBgn0052521	FBtr0077236	1	1	3	60	X	21080862	21080880	GAACAACATCTTTGCACCC		59	21080820	21080838	ATGGTTGTACGTGTAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15450	FBgn0031132	FBtr0077280	3	1	1	65	X	20696333	20696353	TCTATGCTCAGATACATGCTG		59	20696380	20696398	CATGTACCAAACATCGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cactin	FBgn0031114	FBtr0077305	1	1	1	61	X	20297100	20297120	CAACATATTCTATCCGGACCT		59	20297143	20297161	AGGGAGTGAGGAAGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	obst-A	FBgn0031097	FBtr0077334	1	1	1	140	X	20112281	20112299	CAAGTTCAACAAGTGCGAC		59	20112748	20112766	TAGAAGATGTTGCACACGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Sdic1	FBgn0067861	FBtr0089604	2	1	1	67	X	20072338	20072356	TGGTCTACACAAAGCAGAC		59	20070434	20072307	ATCAAATGCAAGCACATCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14229	FBgn0031059	FBtr0074753	2	1	1	63	X	19588636	19588654	GAACAAGATGCTGTACGAC		58	19588591	19588609	GATCACTAGCTACTGGCTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Zw	FBgn0004057	FBtr0074749,FBtr0074748	1	2	2	60	X	19565028	19565046	AACATCAAGCAGATCTGCA		59	19565154	19565173	AAGGCTTCTCGATAATCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	pcm	FBgn0020261	FBtr0074784	1	1	1	93	X	19382707	19382779	GATTCAAGTCAGCATCATGG		58	19382633	19382651	GAAGGTGCTCAGATAGTCC		59	NA	
Drosophila melanogaster	50	CG7453	FBgn0030991	FBtr0074667,FBtr0074666	3	2	2	65	X	19074920	19074939	CACTGATATACACCAGGAGG		58	19074967	19074985	GTACCTGGCTTATCCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32548	FBgn0052548	FBtr0074569,FBtr0074568	2	2	2	76	X	18330497	18330515	CCTTCCTCGATTATCAGCG		59	18330439	18330457	GTAGTGGTAGAGCTTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6842	FBgn0027605	FBtr0074504	1	1	1	80	X	17802677	17802695	AATAAGAACTACGCGGAGG		59	17802738	17802851	CTGTGCCTCATATTTGATGG		58	NA	
Drosophila melanogaster	50	xmas-2	FBgn0028974	FBtr0074404	3	1	1	91	X	17051538	17051616	GACAGTATGAGTTGGTGGA		58	17051465	17051483	ATTGAGGTAGAGGTCTCGT		59	NA	
Drosophila melanogaster	50	CG9672	FBgn0030777	FBtr0074361	3	1	1	60	X	16600507	16600525	GTGGATCTCTACAATGGCA		59	16600465	16600484	TGTAGTTCGGGTTAATGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9676	FBgn0030773	FBtr0074364	1	1	1	60	X	16594035	16594053	CTCACCAGATCTCACTACG		58	16593993	16594011	TTGGAGATTATGGAGCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211	1	5	5	111	X	16178692	16178711	TCTATGTCCAGGTCAATCAG		58	16178784	16179063	AATGCATAGCCTACGTAGTC		59	NA	
Drosophila melanogaster	50	CG12395	FBgn0030722	FBtr0074260	1	1	1	60	X	15956085	15956103	TATAAGTCCTACGCAAGCA		58	15956043	15956061	TTAGATGTTAAAGCCGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8939	FBgn0030720	FBtr0074138	3	1	1	60	X	15893565	15893583	GCTATAAGGTCGTCGATCC		59	15893605	15893625	CTCTTCTTTGCATCCATTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8974	FBgn0030693	FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186	3	5	5	212	X	15688455	15688537	GATCCACGTAACAAAGTTCC		58	15688197	15688215	CTGTTCATCCTCGTATTGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Graf	FBgn0030685	FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197	1	6	6	80	X	15646356	15646433	AACCAATGTTCGTTACTCC		57	15646294	15646312	TAGTTCTCCGGAATGAGTC		58	NA	
Drosophila melanogaster	50	Pis	FBgn0030670	FBtr0074059	3	1	2	94	X	15597113	15597227	CTTTAACCAAACGCATTGC		58	15597037	15597055	CCATATCGGGCTCTTTAGG		59	NA	InUTR
Drosophila melanogaster	50	HDAC6	FBgn0026428	FBtr0074009,FBtr0074010,FBtr0074008	1	3	3	156	X	15229749	15230327	TTTACATTCATCCGTCCAC		57	15230447	15230465	CAATAACCGTTGTACTCGG		58	NA	
Drosophila melanogaster	50	dpr8	FBgn0052600	FBtr0073913	1	1	1	80	X	14338550	14347009	CAACATTGTTGAACCCGTC		59	14347052	14347071	CAAGTCAGATTGATGGTGGA		59	NA	
Drosophila melanogaster	50	CG11178	FBgn0030499	FBtr0073805,FBtr0073804	1	2	2	237	X	13502355	13502441	AAACTAGCACAAACCATGC		58	13502642	13502660	TAACTGAGATCTCTTGGGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	IP3K2	FBgn0085388	FBtr0112575,FBtr0112573,FBtr0112574	2	3	3	80	X	13221585	13221603	TATGTGCCCGTTTACAAGG		59	13221715	13221733	ATAGTCACTGAGCAGATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17788	FBgn0030392	FBtr0073648	3	1	1	227	X	12358357	12358375	AATAATGGTTCGCTTGTGG		58	12358566	12358584	TTTATCGCTCAGATCGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2371	FBgn0030323	FBtr0073533,FBtr0073532,FBtr0073534	2	3	3	74	X	11571989	11572007	CATATTGCGTTTGTGGGTG		59	11571933	11571951	ACATTTGATTCGTACCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1703	FBgn0030321	FBtr0073520	3	1	1	154	X	11507156	11507174	ATGACAAAGAAGGGTGGTG		59	11507291	11507382	AATAGATCGTTACCCTTGGC		59	NA	
Drosophila melanogaster	50	CG15201	FBgn0030272	FBtr0073439	2	1	1	213	X	11038386	11038405	AGGATGAGACCATCTTTCTC		58	11038712	11038730	ATTTAGGGACACTTGAGGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG32681	FBgn0052681	FBtr0071466	2	1	1	60	X	10273389	10273407	GTTTCCAGAACTGTCATCC		58	10273347	10273366	GATTGTTCGCTATATGCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3099	FBgn0030145	FBtr0071365	1	1	1	60	X	9514513	9514532	TCTATCGCAAACTAGAGTCC		58	9514554	9514634	ATGTGCAGTTTAAGCTTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	amx	FBgn0000077	FBtr0071331	2	1	1	60	X	9140509	9140527	CTATTCCGTACCAACTGCA		59	9140467	9140485	TAAAGGATCGATTGCCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7065	FBgn0030091	FBtr0071299	1	1	1	114	X	9038972	9040050	CCTTCAAAGGTACCAACGA		59	9040128	9040146	AAAGCATTGGCCAATTTGG		59	NA	
Drosophila melanogaster	50	CG15343	FBgn0030029	FBtr0071178	1	1	1	60	X	8166948	8166967	CCAGATGTTAAGGATAAGGC		57	8166907	8166925	TGGCTCCAATCAATCTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fz4	FBgn0027342	FBtr0071018,FBtr0071017	3	2	2	166	X	7002382	7002400	CTTTCAAACGTCAGCAGTG		59	7002172	7002190	CCAAATAGCCGGAGATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100214,FBtr0100200,FBtr0100205,FBtr0100201,FBtr0100206	1	5	15	191	X	6982728	6982746	GAAAGACACTCACTGACTC		57	6979978	6981655	ATTCTGTATCCATTCCGGA		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG14435	FBgn0029911	FBtr0071042	2	1	1	83	X	6735741	6735760	ATAAGTTTGTGTTGCCAGAC		58	6735599	6735698	GTACGTCCTCGTTATATGAGAG		59	NA	
Drosophila melanogaster	50	CG12543	FBgn0029872	FBtr0070919	3	1	1	94	X	6378101	6378119	GTTTGTGGTCGATAACGGA		59	6377948	6378045	CAAAGTGTCCTGAAATAGCTG		59	NA	
Drosophila melanogaster	50	Marf	FBgn0029870	FBtr0070909,FBtr0070910	2	2	3	125	X	6263370	6263389	TGGAGTTTAAGTTCAGCTGG		59	6263476	6263564	ATACGCTGTGTCCAATACTG		59	NA	
Drosophila melanogaster	50	CG3726	FBgn0029824	FBtr0070858	3	1	1	138	X	5835115	5835201	TAAGCATCCTTACAGTGGC		59	5835303	5835375	GTAGGGATTGGTTTGGACC		59	NA	
Drosophila melanogaster	50	CG4078	FBgn0029798	FBtr0070807	1	1	1	80	X	5644998	5645103	ACTCAAATGTCTCGAGTATCG		59	5645145	5645163	GCTTGTGAATCTTCACCAG		58	NA	
Drosophila melanogaster	50	CG15784	FBgn0029766	FBtr0070777	1	1	1	70	X	5326030	5326048	TTTGGTCCACATCATGGTC		59	5326082	5326100	GGAACGTCAAAGAATGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3009	FBgn0029720	FBtr0070688	3	1	1	154	X	4554210	4554299	CACAGATCGTGGTGATATCC		59	4554075	4554093	GATAGATGAAGCCCAGTCC		59	NA	
Drosophila melanogaster	50	CG15240	FBgn0029684	FBtr0070628	1	1	1	78	X	3804820	3804838	ATCAAGTACTGTTCCCTGC		59	3804760	3804778	GTTGCTGATTCTTGAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hr4	FBgn0023546	FBtr0100515	1	1	1	169	X	1896185	1896279	AAACAAAGAAGTGGAACTGG		58	1896517	1896535	AGAACATCTTGCTCTCGAG		59	NA	
Drosophila melanogaster	50	CG14818	FBgn0026088	FBtr0070364	3	1	1	148	X	1773492	1773511	AACAATCATGATCCCTCGTC		59	1773302	1773320	GACATAATGTCGTCTGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40195	FBgn0058195	FBtr0113828	3	1	1	60	U	1047726	1047744	CGAATTGGGAACGATAACG		58	1047684	1047703	ATCTATTTCCTCTGAAGGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40267	FBgn0058267	FBtr0113851	3	1	2	105	U	367323	367342	GCAGTACCGGAATATTAACC		58	326527	367255	ACGCCGTTTAGTCTTACAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32016	FBgn0052016	FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232	3	6	6	146	4	974515	974656	CTACTCTCAAGAATTGCATTCG		59	974390	974408	CTTGGTGATTGCGTATCCT		59	NA	
Drosophila melanogaster	50	CG11231	FBgn0039939	FBtr0089242	1	1	1	60	4	820363	820381	TTCTAAGCCTTGCTCTTCC		59	820405	820423	TTGATAGCTGTGTTTGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	1	8	8	80	4	671649	672942	CTAACAGCACAGATTGATGG		58	671588	671606	CAAATACGGGTGAAAGCTG		59	NA	
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131	3	5	5	84	4	372565	372585	CGATATACCACAACATGTTGG		59	372445	372522	GTGTCCAGCCATTATATTTGAG		59	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156	1	8	10	80	4	115558	115579	ACGAGATAACTATGGTTACGTG		59	115618	120041	ATATTATTGCCTCCCGAATCC		59	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156	1	8	10	80	4	115558	115579	ACGAGATAACTATGGTTACGTG		59	115618	120041	ATATTATTGCCTCCCGAATCC		59	NA	
Drosophila melanogaster	50	CG15545	FBgn0039806	FBtr0085719	3	1	1	61	3R	26697687	26697705	AAGAAGAGCCACTACAGAC		58	26697561	26697580	GAATTGTAGCGTTGTTCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	jdp	FBgn0027654	FBtr0085682,FBtr0085681,FBtr0085683	2	3	3	97	3R	26345482	26348964	TTCCAGCAGTTAAAGGAGG		59	26345403	26345421	TTGTAGCTCATCGAGATGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31038	FBgn0051038	FBtr0085498,FBtr0085499,FBtr0085497,FBtr0085494	3	4	6	72	3R	25723358	25727914	GAAGGAAATGAACGGACTG		58	25727950	25727968	GATCGATTCGTTAAGCACC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG31033	FBgn0039705	FBtr0085530,FBtr0085529,FBtr0085528	1	3	3	80	3R	25653846	25653866	CATATGCTCTGTAAGAGACGA		59	25653707	25653804	TGTTCGTTTGTAAACGTGG		58	NA	
Drosophila melanogaster	50	CG18731	FBgn0042213	FBtr0085459	3	1	1	64	3R	25551066	25551084	CAATCAGCCTACGATAAGC		58	25551112	25551130	GTTCAGTCATGAAAGCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dmrt99B	FBgn0039683	FBtr0085454	1	1	1	121	3R	25518816	25518834	CAAATGCACTCTAATCGCG		59	25519205	25519223	CAGGAACCGAAGTGTAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ppk20	FBgn0039676	FBtr0085466	2	1	1	80	3R	25493362	25493380	TTCCTGTACAACCACAGAG		58	25493157	25493235	GTAGCTGAAGATGTCATTGTG		59	NA	
Drosophila melanogaster	50	Trc8	FBgn0039668	FBtr0085430,FBtr0085432,FBtr0085429	3	3	4	98	3R	25327494	25327512	TGTCCAACTTTGGACTGTC		59	25327200	25327434	CTTGGATTAGTCTGATGGTCC		59	NA	
Drosophila melanogaster	50	Trc8	FBgn0039668	FBtr0085430,FBtr0085432,FBtr0085429	1	3	4	96	3R	25327494	25327512	TGTCCAACTTTGGACTGTC		59	25327202	25327435	TGGATTAGTCTGATGGTCCA		59	NA	
Drosophila melanogaster	50	SP1029	FBgn0040282	FBtr0085400,FBtr0085398,FBtr0085399	2	3	3	106	3R	25071030	25071112	TACAAGTTCTACCATCCGC		59	25070942	25070961	TTCACGAAGTCCTTGAACTC		59	NA	
Drosophila melanogaster	50	CG14509	FBgn0039647	FBtr0113303,FBtr0113304	3	2	2	148	3R	25004532	25006889	CAGAGTTCGATTATGCCAG		57	25004402	25004420	GTCATAGTGATTGGTGACG		57	NA	
Drosophila melanogaster	50	beta4GalNAcTB	FBgn0039625	FBtr0085419	1	1	1	60	3R	24859466	24859484	AGGTGACCAGAAATGTCTC		58	24859424	24859442	GCAATGATCTCCGAGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31048	FBgn0051048	FBtr0085327	2	1	1	88	3R	24692468	24692545	GTCTATACCACGAGATCCT		57	24692597	24692615	GTATAAATGAGCCAGCTCC		57	NA	
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	2	7	8	82	3R	24639657	24639675	TACTGCTACGGATATTGGC		58	24639721	24640880	CGCTCAAACACCTTATAGC		58	NA	
Drosophila melanogaster	50	Or98a	FBgn0039551	FBtr0085226	3	1	1	81	3R	23672840	23672920	ATATTAAGGTGGCTAAGCTGG		59	23672960	23672981	CAGTTCTTTGTCAATCTGTCAG		59	NA	
Drosophila melanogaster	50	CG12877	FBgn0039544	FBtr0100446	2	1	3	97	3R	23535930	23536006	CTACAATACGACCTACTCGG		59	23536066	23536084	CATGGAACATGGACATCAG		58	NA	
Drosophila melanogaster	50	Cpr97Ea	FBgn0039480	FBtr0085136	1	1	1	84	3R	22909614	22909695	AACCCTATCGTGTTCAACG		59	22909548	22909567	ACCTCGTATTGCACATACTG		59	NA	
Drosophila melanogaster	50	CG14254	FBgn0039469	FBtr0085075	1	1	1	60	3R	22821472	22821490	AGCAAGATATCGTGATCCC		58	22821514	22821532	AAGTAAACCTCTGGCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6403	FBgn0039453	FBtr0085044	3	1	1	72	3R	22561681	22561699	AAGTTCTACTTCTGCCTGG		58	22561627	22561648	CGTTGTTCACGAAATAGTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5476	FBgn0039441	FBtr0085031	3	1	1	169	3R	22458430	22458448	CAATTGGGAGGATCCTCTC		59	22458581	22458599	GAAAGCTATGGCACTTCCT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Hex-t1	FBgn0042711	FBtr0085010	1	1	1	60	3R	22274934	22274953	TGTTCAATCCGAGCATAGAC		59	22274975	22274994	GTAATCTCACGATCCATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14540	FBgn0039398	FBtr0084948	3	1	1	148	3R	21786302	21786388	GAACAAGTCATTAGCAAGGT		58	21786499	21786517	GAAAGACTCAGCATTTCCT		57	NA	
Drosophila melanogaster	50	MED28	FBgn0039337	FBtr0084836	2	1	1	70	3R	21303056	21303074	TCAAGGACGAGAATCAGGA		59	21303108	21303126	ATTGTAGTGCTTCTGCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11889	FBgn0039308	FBtr0100614	3	1	1	60	3R	21098618	21098636	TCTTCCATCAGCAGTTCAG		59	21098717	21098735	TCAAAGATCAGTGATGCGA		58	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	ssh	FBgn0029157	FBtr0084800,FBtr0084799	2	2	2	163	3R	20769134	20769152	CTCTTAAGGATATCCCGCC		58	20768924	20769007	CTTGACAGCCATCTTTAGC		58	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625	1	8	17	81	3R	20521108	20521126	GACGCTGATCAAGAAATGC		59	20521842	20528756	ACGAGTGATATCACCTAAGTC		58	NA	
Drosophila melanogaster	50	Syx18	FBgn0039212	FBtr0084670	3	1	1	61	3R	20450762	20450781	GTGGAACAGATCTATCTGGA		58	20450720	20450739	CTATAGGTTTCCAGTTCGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsc1	FBgn0026317	FBtr0084546	2	1	1	86	3R	19956786	19956865	TAAGCTTATGACGCACGAG		59	19956915	19956933	GAATTCGGTATGATCGGCA		59	NA	
Drosophila melanogaster	50	CG5902	FBgn0039136	FBtr0084501,FBtr0084502	1	2	2	191	3R	19812925	19813001	AGTAGCAGAAGACGATTAGAG		58	19813154	19813172	TTGTTGTAGTGGGAGTTGG		59	NA	InUTR
Drosophila melanogaster	50	Gdh	FBgn0001098	FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498	3	4	4	98	3R	19763339	19763461	AAGCTAAGATCATTGCCGA		59	19763259	19763277	TGTACAGATCGGGAATGAC		58	NA	
Drosophila melanogaster	50	unk	FBgn0004395	FBtr0084403,FBtr0084402	1	2	2	143	3R	18981726	18981806	TACAAGTACAGGTCCACTC		57	18981601	18981619	GGTCGACTTGTAGATCTCC		58	NA	
Drosophila melanogaster	50	CG13841	FBgn0040588	FBtr0084316	1	1	1	81	3R	18593148	18593234	GAATTTCACATCAGGGAAGC		59	18593086	18593104	GTTCCTCGTCAGATTCCTC		59	NA	
Drosophila melanogaster	50	CG6455	FBgn0019960	FBtr0084188	1	1	2	140	3R	17847984	17848135	ATCACCTACGCCAAATACG		59	17847862	17847880	ATCGATCTGATCGTTGACG		59	NA	
Drosophila melanogaster	50	CG33092	FBgn0053092	FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144	3	7	7	268	3R	17705102	17705177	AGGACTTTCGGGATTTGTG		59	17705407	17705427	AGGTACCAGTGAAGTTAATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10825	FBgn0038860	FBtr0084015,FBtr0113258,FBtr0084014	2	3	3	60	3R	16957351	16957370	GACATTGAAGATGGCAACTG		59	16957393	16957411	CGCCTTTACATCTAAGGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5077	FBgn0038786	FBtr0083878,FBtr0083880,FBtr0083881,FBtr0083879	2	4	4	194	3R	16148680	16148698	TCCATCGAGACATTATCCC		58	16148855	16148946	CAAAGCAAGTTGCTTAATGG		58	NA	
Drosophila melanogaster	50	CG4854	FBgn0038766	FBtr0083830	2	1	1	85	3R	15854484	15854503	AACAATGTCTACTCAGAGCG		59	15854551	15854634	TGACAGATTTCGCATTCGT		59	NA	
Drosophila melanogaster	50	CG4572	FBgn0038738	FBtr0083861,FBtr0083860,FBtr0083862	3	3	3	60	3R	15688808	15688826	TGGGCAATAAGACATTCCA		58	15688766	15688785	TTCTTCAAGTGAAGTTCCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dys	FBgn0024242	FBtr0110918,FBtr0110917,FBtr0083764,FBtr0110919	1	4	8	80	3R	15310655	15310768	GATAGTGATACGAGTCGCA		58	15310812	15310830	AGACAATGATTCCAGGACC		58	NA	
Drosophila melanogaster	50	CG5835	FBgn0038682	FBtr0083751	2	1	1	118	3R	14977295	14977313	TTTAAACAAACCGCAGACG		59	14975339	14977213	AATCGTCGGAAGTATCCTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14286	FBgn0038673	FBtr0083710	3	1	1	78	3R	14850207	14850226	AATCAAATTCACACCTACGG		58	14850267	14850285	CTTTCCAGATGACAGAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14298	FBgn0038654	FBtr0083695	2	1	1	62	3R	14702462	14702481	AATTTCAACTGCTATGTGGG		58	14702506	14702524	CTTGGTCTGATCCTTCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7709	FBgn0038642	FBtr0083687	3	1	1	62	3R	14518022	14518040	ATCTCAAAGAAGCAGCTGG		59	14516621	14516639	TTGATGAGCTTCGAATGCA		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	fray	FBgn0023083	FBtr0083638,FBtr0083637	1	2	2	60	3R	14413756	14413775	TTGCTCAATTACCACTACCT		58	14413798	14413816	AGGACAAGATTGACTGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7685	FBgn0038619	FBtr0083630	2	1	1	130	3R	14231128	14231147	GATCCCATCAAGATTGTCAG		58	14231303	14231321	CAGTAGTTGTCGTTCAGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5823	FBgn0038515	FBtr0083505	2	1	1	67	3R	13358994	13359012	CACCATTCTCACTGGACTG		59	13358885	13358903	ATGATTCGATGGATCCGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5148	FBgn0038478	FBtr0083400	1	1	1	60	3R	12915293	12915311	CATTGCCAATAGCTCAACC		59	12915332	12915353	CTGGGTCAAATGATTACTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3983	FBgn0038473	FBtr0083426,FBtr0083425	1	2	2	80	3R	12897403	12897422	GAGCTCCATCATAAACTCGT		59	12897280	12897361	TCTTGCATTGATTTGGTCAC		59	NA	
Drosophila melanogaster	50	Fas1	FBgn0000634	FBtr0083333	3	1	4	111	3R	12458490	12461276	GTCGTTCAAGGAGAATGCT		59	12461351	12461369	AATGGTCACTTCTGTCAGG		59	NA	
Drosophila melanogaster	50	CG17562	FBgn0038449	FBtr0083329	3	1	1	90	3R	12442647	12442725	CATTAAGCGTTTAAAGCTGC		58	12442778	12442796	TAGGATCCTTACCAACGAC		58	NA	Nonspecific
Drosophila melanogaster	50	CG10340	FBgn0022344	FBtr0083358	2	1	1	60	3R	12439333	12439352	CGACACTAAGGTACTCACAG		59	12439292	12439311	GAACATCTGCAACTCATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	decay	FBgn0028381	FBtr0083304	3	1	1	183	3R	12325640	12325658	AACTCTTCTTCATCCAGGC		59	12325170	12325496	GAGAAGAATTTGTCGAATGTGG		59	NA	
Drosophila melanogaster	50	CG6654	FBgn0038301	FBtr0083139	2	1	1	102	3R	11038057	11038075	ATACGCTGTGATTCCAAGG		59	11037918	11037993	GCATGGTGAATACTTTCTGAC		59	NA	
Drosophila melanogaster	50	CG14860	FBgn0038273	FBtr0083002	2	1	1	69	3R	10721196	10721214	TTCAAGAGCGAGGATTCTG		59	10721246	10721265	CGCATGGATTATTATGAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eff	FBgn0011217	FBtr0083018	2	1	1	119	3R	10560129	10563151	GGAGATGATTTATTTCACTGGC		59	10559528	10559546	TTTGGGTGGTTTAAAGGGA		58	NA	
Drosophila melanogaster	50	primo-1	FBgn0040077	FBtr0091749,FBtr0091747	1	2	3	104	3R	9536371	9536453	TTTGTTTGGGCAACATCTG		59	9536285	9536303	CAATTGCTGCACTATCGAC		59	NA	Nonspecific
Drosophila melanogaster	50	primo-1	FBgn0040077	FBtr0091747,FBtr0091748	3	2	3	145	3R	9536154	9536172	ATTCGACTACATCTTCGGC		59	9535872	9536045	GCTCATAGTAGGGATCCTC		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Adgf-C	FBgn0038173	FBtr0082821	2	1	1	168	3R	9534286	9534359	AGAGACCAATTGGTTTGGT		59	9534491	9534509	CACCTGATTCGAAATGGGA		59	NA	
Drosophila melanogaster	50	CG9813	FBgn0038143	FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767	2	6	6	120	3R	9199920	9200008	TGGCAAAGGTAATGTTTGC		59	9199818	9199836	AAGTCGATGGGTATGACAC		59	NA	
Drosophila melanogaster	50	CG8774	FBgn0038136	FBtr0082740,FBtr0082741	3	2	2	136	3R	9125212	9125230	TAACTTTGACGGAAGAGCT		58	9125330	9125482	AGAAATGGTTCTGGTAGCT		58	NA	
Drosophila melanogaster	50	beat-Vc	FBgn0038084	FBtr0082658	1	1	1	63	3R	8578160	8578178	TCAAGCTGATCGATCAGAC		59	8573261	8573279	ATGAACGGATCGAATTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	trus	FBgn0038055	FBtr0082634	1	1	1	115	3R	8283515	8283533	ATGAGAACGAGTCCTACGA		59	8283612	8283689	CGTATCCCGCGAATATCTC		59	NA	
Drosophila melanogaster	50	CG3313	FBgn0037980	FBtr0082555	3	1	1	82	3R	7841240	7841258	AGCCGGAAAGTATTTGGAG		59	7841112	7841194	CCTCCGGATACACAATTCC		59	NA	
Drosophila melanogaster	50	CG12213	FBgn0037968	FBtr0082510	2	1	3	180	3R	7792356	7792376	ACTATGTACCTAAAGTCCAGC		58	7791995	7792214	GATTTGGGCACAATTTGCA		59	NA	
Drosophila melanogaster	50	CG6962	FBgn0037958	FBtr0082516	3	1	1	121	3R	7706267	7706286	ATAAGAAGATCTTTGGCGAG		57	7706106	7706184	CGCTTGATCAACATTAAACG		58	NA	Nonspecific
Drosophila melanogaster	50	HisCl1	FBgn0037950	FBtr0082470	3	1	3	157	3R	7614595	7614614	CTATAGACGTCTGGATGTCG		59	7614734	7614804	TAGTGCAGACTTTAGGTCG		58	NA	
Drosophila melanogaster	50	Fer3	FBgn0037937	FBtr0082435	1	1	1	60	3R	7519514	7519532	CTACGAGAAACGACTGTCC		59	7519472	7519491	GAATCCGATGTAGGTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6325	FBgn0037814	FBtr0082260	2	1	1	82	3R	6230155	6230175	CACAAAGAAGCTAAGAAGACG		59	6230029	6230111	GTGATATGCAGTCGTCCTC		59	NA	
Drosophila melanogaster	50	jumu	FBgn0015396	FBtr0082237	3	1	1	81	3R	6185608	6185686	CTTCGATATAGAGGTCGGG		58	6185731	6185749	ATTCGAGATAATTCGACGC		57	NA	
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082186,FBtr0082187	2	2	8	87	3R	5955361	5960551	GAAGCCAGCAAGTAATGGA		59	5955292	5955310	TATGATGTCTGCATCCGTG		59	NA	
Drosophila melanogaster	50	CG9746	FBgn0037663	FBtr0081986	3	1	1	82	3R	5068878	5068896	ATCACGTGTTCGTAGTCAG		59	5068759	5068834	GTCTAAAGAGATTACGCAAGG		58	NA	
Drosophila melanogaster	50	CG11963	FBgn0037643	FBtr0113206,FBtr0081957	3	2	2	122	3R	4767443	4767462	CATTCTGGTCAACATCTTCG		58	4767547	4767633	ACTTTGGTTCCCTGAAGAC		59	NA	
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0089783,FBtr0089784,FBtr0112822	1	3	8	81	3R	4660661	4664121	AGTCTAAGGTACCCTACGA		58	4660598	4660616	TAGATGCTGTACTTGCTGG		59	NA	
Drosophila melanogaster	50	CG8112	FBgn0037612	FBtr0081904	3	1	1	249	3R	4539287	4539306	TATTCTGGTCATGTTCCTGC		59	4539893	4539911	GTACAGGATGAGACAGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2678	FBgn0014931	FBtr0081757	1	1	1	132	3R	3740984	3741640	CTATGCTAAAGCCGAAACC		58	3741736	3741754	AACTCCTCGGAACAATAGG		58	NA	
Drosophila melanogaster	50	pyd3	FBgn0037513	FBtr0081780	1	1	1	96	3R	3573996	3574014	TCTTCTTATGTCGCAGCTC		59	3573858	3573876	GACACAGGTTCAGATCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Antp	FBgn0000095	FBtr0081648,FBtr0081652,FBtr0081651,FBtr0081649,FBtr0081650,FBtr0081647,FBtr0081656,FBtr0081654,FBtr0081653,FBtr0081655	2	10	11	256	3R	2734436	2734454	CAGAACCATCACAACATGG		58	2724212	2724230	AGCTCTAGAGTCTGGTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14676	FBgn0037388	FBtr0078645	3	1	1	60	3R	1673330	1673348	TCTACAAGCTCTTCTTCGT		57	1673371	1673390	TGCAGATATTCCCTGATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1213	FBgn0037387	FBtr0078643,FBtr0078642,FBtr0078644	1	3	3	64	3R	1671125	1671143	GATGCAGCTCTTCATTGTG		59	1671243	1671261	GGTATGAAACATACGGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31551	FBgn0051551	FBtr0078706	2	1	1	60	3R	1456841	1456859	CATGAAGAATCAGAGCAGG		57	1456883	1456901	TAGAGTGTGAACTTGGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0110933,FBtr0078809,FBtr0078810,FBtr0100199	3	5	15	83	3R	1139715	1139734	TCCAGCAAATCCGATAAGAG		59	1139211	1139672	GGTGGAGTTCTTACTACTATCC		59	NA	
Drosophila melanogaster	50	Cdep	FBgn0051536	FBtr0110958	2	1	2	80	3R	749540	751276	AACTTCCAAAGGTCTCAGTC		59	751318	751337	GGAATTCACATACGTATGCG		59	NA	
Drosophila melanogaster	50	laf	FBgn0020280	FBtr0078852	2	1	1	67	3R	702550	702568	AGGTCTCCAGTAAGGAAGG		59	702424	702442	GACAAGCTCTTGCTTATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31523	FBgn0051523	FBtr0078938,FBtr0078935,FBtr0078936,FBtr0078937	1	4	4	91	3R	293417	293436	ATTTCTACTACATGATCGCC		57	293286	293364	GAATTGAACCATTTGGAAGG		57	NA	
Drosophila melanogaster	50	CG9855	FBgn0037242	FBtr0078950	2	1	1	150	3R	222520	222596	TATTTATCCGAACCTCAGCC		59	222389	222407	AAAGAGAATACGTCCCACG		59	NA	
Drosophila melanogaster	50	CG9776	FBgn0027866	FBtr0078955	1	1	2	141	3R	153970	153990	AGAAGCAAGCTGATATCTCAG		59	153730	153867	TACAGAGCATATTGTGCCG		59	NA	
Drosophila melanogaster	50	snRNA:U12:73B	FBgn0041721	FBtr0075315	2	1	1	65	3L	16646871	16646891	GCCTCAAACTAATGAGTAAGG		58	16646918	16646936	CTAGAAGCCAATACTGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40470	FBgn0058470	FBtr0111152	2	1	1	80	3L	23927591	23927671	ATGAACCAGGAATAAAGGTCC		59	23927531	23927551	GCAGAGGCGTATTAAATAGTG		58	NA	
Drosophila melanogaster	50	CG17698	FBgn0040056	FBtr0111168,FBtr0111167	1	2	3	162	3L	23734173	23739296	CAAATTGGACAGGGATCCT		59	23739420	23739440	TGTAAACTCGATCTAGAGGTG		58	NA	
Drosophila melanogaster	50	nrm	FBgn0005629	FBtr0111148	1	1	2	110	3L	23017169	23017187	TATCATACTGGTTGCTGCT		58	23017259	23018195	TCCGTGAGATATTTATCCTGG		58	NA	
Drosophila melanogaster	50	CG33771	FBgn0053771	FBtr0091772	3	1	1	60	3L	22642929	22642947	CTACTACATGCACGACTGG		59	22642969	22642989	GCCAGGAATAAGAAACTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-ile	FBgn0027086	FBtr0078500,FBtr0078499,FBtr0078498	3	3	3	107	3L	22283343	22283418	CAGAGATTGGGCTATCTCC		58	22283489	22283507	GCTAACTGCTTGATACTGC		58	NA	
Drosophila melanogaster	50	RpLP0	FBgn0000100	FBtr0078481	3	1	1	66	3L	22069391	22069409	GTTAGGGAGAACAAGGCAG		59	22069439	22069531	ACTCATCGAACAGTTCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Syn1	FBgn0037130	FBtr0078450	3	1	2	170	3L	21753270	21753288	CATCTCGAAGATCTTCCGG		59	21741289	21753137	CGCAGGAATTTAACTTCCAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG32447	FBgn0052447	FBtr0078460,FBtr0078461	2	2	2	184	3L	21687566	21687584	TTCTGCTATTATCCTCCCG		58	21686806	21687418	GGTCGTATAAACATGCCTG		58	NA	
Drosophila melanogaster	50	CG32447	FBgn0052447	FBtr0078460,FBtr0078461	2	2	2	184	3L	21687566	21687584	TTCTGCTATTATCCTCCCG		58	21686806	21687418	GGTCGTATAAACATGCCTG		58	NA	
Drosophila melanogaster	50	CG3947	FBgn0037019	FBtr0078278	2	1	1	60	3L	20770574	20770595	CGACTTCAAGCTTCATATAGAC		58	20770535	20770553	GAGTTTCCTCGGAATTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6996	FBgn0036950	FBtr0074822	1	1	1	60	3L	20201146	20201164	GACTGGACTCTTCTACGAC		58	20201185	20201206	ACACTTGATACTACTGGAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ac76E	FBgn0004852	FBtr0074897	1	1	1	82	3L	19966657	19966744	GTAATCGAATTGAACCTGGC		59	19966789	19966807	ATGTTGCTCAGGTAGAGGA		59	NA	
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075008	3	1	11	85	3L	19297288	19297306	ATAACCCTGACTGTTCTCG		58	19297155	19297173	GTGATCTTGCTATTGTGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9666	FBgn0036856	FBtr0074991	3	1	1	155	3L	19258403	19258421	GTGGGAGAAGTCCTTTGAC		59	19258540	19259708	TTCTGAATGTACGACCGTG		59	NA	
Drosophila melanogaster	50	CG18135	FBgn0036837	FBtr0075044,FBtr0075043,FBtr0075042,FBtr0075045	3	4	4	60	3L	18984759	18984777	CAGACATGATCGAGTTGGA		59	18984717	18984735	TCGTGATAAATCACAGGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32192	FBgn0052192	FBtr0075146,FBtr0075147	3	2	2	239	3L	18033710	18033728	TGATATTGTACGCTTCGGA		58	18034086	18034105	GAGAATATCCAACTCTGCTC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Jon74E	FBgn0023197	FBtr0075207	1	1	1	80	3L	17541554	17541659	ATGAATGACGAATCCACTG		57	17541492	17541511	GTATTCACAGTCCTCATTGG		57	NA	
Drosophila melanogaster	50	CG13059	FBgn0036607	FBtr0075371	3	1	1	103	3L	16317193	16317211	CTTAAGACTGTGGTCTCCT		57	16317278	16317296	ATCACGGTCTTGATAACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5284	FBgn0036566	FBtr0075444,FBtr0075445	2	2	2	82	3L	16087580	16087598	TTATCCGTTCCTAGACAGC		58	16087644	16087720	AAGTTTCATTCCGCTTTGG		58	NA	
Drosophila melanogaster	50	CG7304	FBgn0036527	FBtr0075576	2	1	2	87	3L	15673901	15673978	AATCAAGGAACCTGAAACG		57	15674029	15674047	ATATTCAGGAGATGTGGCT		57	NA	
Drosophila melanogaster	50	AGO2	FBgn0046812	FBtr0075560,FBtr0075559	2	2	2	84	3L	15551210	15551360	AAGTGACTGTGACAGATCG		59	15551407	15551426	TTAAGGTCAATGGTCGAGTC		59	NA	
Drosophila melanogaster	50	CG18581	FBgn0036466	FBtr0075666	2	1	1	70	3L	15043002	15043020	GAAACTCACAGTCCTACGG		59	15042950	15042968	TCATCTTCGAAGAACTCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9384	FBgn0036446	FBtr0075690	1	1	1	285	3L	14756185	14756203	AAGAACATAGCTTTCCGGG		59	14757032	14757050	ATCTTGAACATCGTTCGCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100042,FBtr0100039,FBtr0100040	3	3	6	60	3L	14206288	14223280	TGACTACGATTATAGGCTGGA		59	14223301	14223320	CTGTGTATCTGACAGATCGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	stv	FBgn0086708	FBtr0075806,FBtr0075809,FBtr0075807	3	3	5	83	3L	13474163	13474181	GACATGGACAACATGTTCC		58	13474228	13474324	GAAACCAAAGTGTGAGTCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32117	FBgn0052117	FBtr0075905	1	1	1	60	3L	12896340	12896358	TACATAGCCATGAAACGCA		59	12896298	12896316	AGATCTTCGGTTTGGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32108	FBgn0052108	FBtr0075933	2	1	1	96	3L	12816013	12816092	GAAGGTATGTGAATATGTAGGC		58	12816148	12816167	ACATAGCAGGTATTGACTCG		59	NA	
Drosophila melanogaster	50	ara	FBgn0015904	FBtr0075908	2	1	1	239	3L	12587398	12587416	AAGGGTGAGAAGATCATGC		59	12587618	12587699	CTCTTTGGTCTCATCTTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32092	FBgn0052092	FBtr0076082	2	1	1	80	3L	11796385	11796513	GCGGTTAAATGAGACTATAACG		59	11796326	11796346	CAGAGACACTGAATACTTCCC		59	NA	
Drosophila melanogaster	50	Pi3K68D	FBgn0015278	FBtr0076088,FBtr0076087	3	2	3	80	3L	11769204	11769284	ACTGTGATGATACACCACG		59	11769142	11769163	TAGGTAGCACTTCACATATGTG		59	NA	
Drosophila melanogaster	50	Mob1	FBgn0036172	FBtr0089331,FBtr0089330,FBtr0089333,FBtr0089332	2	4	4	160	3L	11520315	11520333	CTAGTGGATCTTCCAGCTG		59	11518602	11518687	CATAAGTACGTTCTGTTGCC		58	NA	
Drosophila melanogaster	50	CG14160	FBgn0036066	FBtr0076316,FBtr0113160	3	2	2	234	3L	10082166	10082184	CTAATGTGGAAATACCGCC		58	10081408	10081906	CACTGGAGGTATATGCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385	1	8	8	111	3L	9825956	9826035	GAGTTAACCGGGACTACAC		59	9826110	9826128	CTTTCCCAAACTTAGCCGA		59	NA	InUTR
Drosophila melanogaster	50	Hsp23	FBgn0001224	FBtr0076453	1	1	1	60	3L	9375423	9375442	TCATCACTCGTCACTTTGTC		59	9375464	9375483	ACCTTATCAGCCTCATAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5026	FBgn0035945	FBtr0076516,FBtr0076515	3	2	2	122	3L	8963883	8963901	GTCTTATTTGAACCGGCCT		59	8963985	8964058	AAATAGAGATCACTCCACAGC		59	NA	
Drosophila melanogaster	50	Tsp66E	FBgn0035936	FBtr0076507,FBtr0076508,FBtr0076506	1	3	3	84	3L	8919887	8921127	GCATTGAGCAATTTACACAG		58	8921174	8921192	CTCATGAAGAACATGACGG		58	NA	
Drosophila melanogaster	50	Prm	FBgn0003149	FBtr0076593,FBtr0076594	1	2	4	143	3L	8732792	8732810	CATCATCCTGTACGAGACC		59	8732582	8732686	TCATGAAGATCATCTCCCAG		58	NA	
Drosophila melanogaster	50	CG17352	FBgn0035880	FBtr0076675	3	1	5	141	3L	8346692	8346710	AAAGGGATCAAGAACAGCC		59	8346517	8346588	AAGTGGGACTCACAAATAGC		59	NA	
Drosophila melanogaster	50	CG8541	FBgn0035788	FBtr0076862	2	1	1	61	3L	7464934	7464955	ATACACTCCTGCTATTAAGACG		59	7464977	7464995	GAGTAGCCTGAGTGTACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14821	FBgn0035719	FBtr0076895,FBtr0113150	1	2	2	220	3L	6939646	6940353	GAAGATTGATGAGGGTCCC		59	6940537	6940555	TAGAAGGCTGAATCAGCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	tan	FBgn0028980	FBtr0077043	2	1	1	63	3L	6048716	6048734	CATAGTCTACGACTTTGCC		57	6048761	6048832	GTTAGTAGTGGGTGACCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10477	FBgn0035661	FBtr0077068	2	1	1	60	3L	6027462	6027480	ACATGGGTACTAACTGCTG		58	6027368	6027386	CATAGTAGATGGTCACGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32407	FBgn0052407	FBtr0077032	1	1	1	96	3L	5916305	5916323	ATCAAGAGCATCATCGGAG		59	5916383	5916464	TAAAGGCAGCATCTAGCAG		59	NA	
Drosophila melanogaster	50	PGRP-LD	FBgn0035635	FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577	1	4	4	107	3L	5775936	5776021	TGCATAAGCTGGAAAGGTC		59	5776092	5776110	GATACTGGCTCCGATAGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG10576	FBgn0035630	FBtr0077121,FBtr0077122	3	2	2	211	3L	5757777	5757795	CTGACTACACGTTAAAGGC		58	5756865	5757540	GAGGGAGTAGTTATTGGCG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Ubp64E	FBgn0016756	FBtr0077096,FBtr0077095,FBtr0077097	3	3	3	99	3L	5751686	5751765	GTGACTAGTATCACCCAAGAG		59	5751826	5751844	ACATGTATGCATTGGTGCT		59	NA	
Drosophila melanogaster	50	mthl2	FBgn0035623	FBtr0077088,FBtr0077087	1	2	2	80	3L	5599497	5599577	TCGGACAAACAGAATTACAC		58	5599617	5599638	GTAGGAGAATATCTCAAAGCTC		57	NA	
Drosophila melanogaster	50	CG10591	FBgn0035621	FBtr0077128	1	1	1	70	3L	5592287	5592307	GGGCAACATTATAGTGATTCC		58	5592237	5592255	AAATGTGGAAGAACTGAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Msr-110	FBgn0015766	FBtr0077131	2	1	3	188	3L	5566920	5568048	AATCATCAGGCCTACAAGC		59	5566750	5566768	AGTCTCAAGCATTAGCTCC		59	NA	
Drosophila melanogaster	50	shep	FBgn0052423	FBtr0077173,FBtr0077174	1	2	4	143	3L	5160146	5161354	CAAATGTTACGGCTTCGTC		59	5157062	5160039	TCCTGTTCCTGTTGAATGG		59	NA	
Drosophila melanogaster	50	CG13722	FBgn0035553	FBtr0073329	2	1	1	74	3L	4487529	4487548	AAGCCAGAGCTACTTTACTG		59	4487417	4487435	GAATACCCATCGGTGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1295	FBgn0035509	FBtr0073222	3	1	1	85	3L	4204733	4204753	CACATTGAACTTGAACCTGAC		59	4205226	4205244	GATCGTACAGAGGCTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18869	FBgn0042179	FBtr0073204	3	1	1	144	3L	4060912	4060933	GCTATGTATACGATGATTCACG		58	4061038	4061122	ACTGCATAGCCAAGATGTC		59	NA	
Drosophila melanogaster	50	mge	FBgn0035473	FBtr0073176,FBtr0073175	2	2	2	64	3L	3908527	3909017	AGAACTACGATGATGAGCC		58	3908481	3908499	GAACATCTCGGTTAGTCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Awh	FBgn0013751	FBtr0073156,FBtr0073155	2	2	2	132	3L	3860362	3860380	AGTATGGTTCCAGAACTCG		58	3860752	3860900	ATAGAGGATTCATGAGTCGG		58	NA	InUTR
Drosophila melanogaster	50	CG14967	FBgn0035420	FBtr0073099	2	1	1	85	3L	3214811	3214829	GAAATGGAGTTGACCTGGA		59	3214682	3214764	CGTACAGTCACATTAAGTTCC		58	NA	
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	2	9	15	80	3L	3083796	3084813	TCGCCACTTATATGAATCGA		58	3084853	3084874	CCAAATTAAGTAGTGAGAACCC		58	NA	
Drosophila melanogaster	50	dlt	FBgn0024510	FBtr0072790	2	1	1	60	3L	1791675	1791693	TCATCGGTAGCATTTCTGG		59	1791633	1791651	TGTTACGCATTAGTTGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12035	FBgn0035263	FBtr0072766	1	1	1	60	3L	1724860	1724878	TTACTATGGGCACTACGAG		58	1724902	1724920	AGTGTCCTTTAGCTTTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2199	FBgn0035213	FBtr0072721	3	1	2	62	3L	1341944	1341962	TAACAGACGTACTGGAGAC		58	1341834	1341852	ATATCTTGATGGGCAAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33966	FBgn0053966	FBtr0100007	2	1	1	61	3L	1234875	1234893	TGATCAAGCCCATGATGTC		59	1234981	1234999	CCATTTGCTTCCATGAACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Glut1	FBgn0025593	FBtr0112910	1	1	6	80	3L	982229	982247	CTGCATCTCTATGGTCTGG		59	982289	983845	ACCAAAGAACTCCTTGATCAG		59	NA	
Drosophila melanogaster	50	CG13897	FBgn0035160	FBtr0072601	2	1	1	60	3L	738522	738540	GTGCACTCAAGATTGAAGC		59	738480	738498	ACTTGCTCGCTCTTAAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3344	FBgn0035154	FBtr0072609	1	1	1	71	3L	686599	686617	TACAGGTTGATGTCCAGAG		58	686493	686511	CACATCGAATTTCACGAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	pyx	FBgn0035113	FBtr0072524	3	1	2	84	3L	222326	222344	AGGTTAAGGAAACCCTGAC		58	222207	222280	GTCATTAGTTCCAGGAAACAG		58	NA	
Drosophila melanogaster	50	Kaz1-ORFB	FBgn0063923	FBtr0072488,FBtr0100851,FBtr0072493,FBtr0072490	1	4	6	110	3L	217695	217713	AGTACAATCCAATCTGCGG		59	217866	217884	GACAAATTCCCTTGTGCAC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	5SrRNA-Psi:CR33356	FBgn0053356	FBtr0086348	1	1	1	74	2R	15652639	15652657	TACCACGCTGAATACATCG		59	15652583	15652601	GTATTAAACGCGTACGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33433	FBgn0053433	FBtr0086425	1	1	1	62	2R	15624217	15624235	AATACATCGGTTCTCGTCC		59	15624173	15624191	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3570	FBgn0035035	FBtr0072317	3	1	1	91	2R	20491685	20491703	AATACGAGAACCTGAGCTG		59	20491757	20491776	TGTATTCCAGTAGCAAACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3253	FBgn0041706	FBtr0072251	3	1	1	85	2R	20003513	20003531	TACATAGCAGTGGACAACG		59	20003580	20003654	TGCATCTCATAAACCTGGG		59	NA	
Drosophila melanogaster	50	Adk2	FBgn0022708	FBtr0072163	3	1	1	184	2R	19912486	19912504	GAGATTTCATCCGGTTCGA		59	19912652	19912733	AATGTGTCGAGCTTCTCAG		59	NA	
Drosophila melanogaster	50	CG4585	FBgn0025335	FBtr0072227	3	1	1	69	2R	19750975	19750993	CTACCAGAACATGCTGGAG		59	19750924	19750942	CTTGAACACGTAATCCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11300	FBgn0034901	FBtr0072090	1	1	1	77	2R	19639867	19639887	CAACCAGAGTAATCAGAATGG		58	19639926	19639944	TACAATAGACGACGGTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11299	FBgn0034897	FBtr0113114,FBtr0113113,FBtr0072087	3	3	3	112	2R	19619396	19619414	CATTTACCAGGACTTTGCC		58	19619490	19619573	CATCGTTGTACAATCCGTC		58	NA	
Drosophila melanogaster	50	CG9899	FBgn0034829	FBtr0071969	3	1	1	93	2R	19048080	19048101	CGATCCAGAAGAATAATCACAC		58	19048155	19048260	CCCATATAGGTTCTGGCTG		59	NA	
Drosophila melanogaster	50	Art7	FBgn0034817	FBtr0114564	3	1	1	191	2R	18964705	18964723	CTGTGGGAATATCCCTGTC		59	18964477	18964496	ACTGCTTACAATGGATCTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Obp59a	FBgn0034766	FBtr0071869,FBtr0071870	3	2	2	76	2R	18590239	18590257	CCTGCTGATTTGTTTGAGC		59	18590297	18590315	CTTCACTTAGTCCCTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13511	FBgn0034759	FBtr0071863	1	1	1	60	2R	18547460	18547479	GCTCTGACCTTGTATATCTG		57	18547559	18547578	AGTTGATGAAGTAGGGAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3045	FBgn0034703	FBtr0071787	2	1	1	80	2R	18061065	18061143	CATACAAATTCAGGCTACGAC		59	18061005	18061024	CATTATGCAACGGATTTGGT		59	NA	
Drosophila melanogaster	50	CG30392	FBgn0050392	FBtr0071618	2	1	1	109	2R	17179225	17179243	AGAACCATGCTGGATTACG		59	17179074	17179153	TCGTAGACAAAGTCAAGACC		59	NA	
Drosophila melanogaster	50	CG16742	FBgn0034529	FBtr0086227	3	1	2	98	2R	16511585	16511604	AAACAACCTTCGTATGTTCC		58	16511665	16511733	AATACGGTTGTTGAGTGGA		58	NA	
Drosophila melanogaster	50	Mgat1	FBgn0034521	FBtr0086259	3	1	1	80	2R	16448045	16448063	AAGCACATTAAACTGAGCG		58	16447926	16448004	GTTATCGTAATTGTCCTTCAGC		59	NA	
Drosophila melanogaster	50	CG13424	FBgn0034520	FBtr0086218	3	1	1	197	2R	16445732	16445907	GAAACGCAGATCAAGATCTG		59	16446067	16446085	CATAATGGACTGAATGGGC		58	NA	
Drosophila melanogaster	50	isopeptidase-T-3	FBgn0028372	FBtr0086473,FBtr0086474	1	2	2	118	2R	15559346	15559420	GCAGTCGAATATCCAATACG		58	15559501	15559519	AACGTTGCTTTAGCATAGC		58	NA	
Drosophila melanogaster	50	CalpA	FBgn0012051	FBtr0086529,FBtr0112869	3	2	3	123	2R	15316872	15316890	CATCGATCCTCAGAAGGAG		58	15316977	15317053	TTTGGGTAAATCGTCCCTC		59	NA	
Drosophila melanogaster	50	CG18605	FBgn0034411	FBtr0086571	2	1	1	63	2R	14866001	14866019	GATGAAGATGGACGGACAG		59	14866046	14866064	AGGTGCATTAGCTTGTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18604	FBgn0034378	FBtr0086606	3	1	1	61	2R	14591366	14591384	TCCAGTAATGTCACTGCAG		59	14591521	14591539	TGATTGAAGGCATATCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6459	FBgn0034259	FBtr0086892	2	1	1	189	2R	13559530	13559548	CAATGTGAACCATACGGTG		58	13559301	13559377	GAAGACATCGTTGTACTCG		57	NA	
Drosophila melanogaster	50	GstS1	FBgn0010226	FBtr0087005,FBtr0100258,FBtr0087006	2	3	3	121	2R	12981867	12981885	CATTCTACCTGGAGAAGCT		58	12981677	12981697	GACCATGTAGTTCATGTAGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	1	5	7	80	2R	11836644	11836723	CATTTGCTACGTGCTACTC		58	11836582	11836603	GCTCTAGTTATATTCGAGAAGG		57	NA	
Drosophila melanogaster	50	l(2)k05713	FBgn0022160	FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309	2	4	4	84	2R	11747749	11747767	GAACTTCCTCGAGATCCAC		59	11747608	11747702	TACTGCTCTAGATCTAGGCC		59	NA	
Drosophila melanogaster	50	Mtk	FBgn0014865	FBtr0087386	2	1	1	132	2R	11296383	11296401	GCAACTTAATCTTGGAGCG		59	11296497	11296515	TTGGTTAGGATTGAAGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	chn	FBgn0015371	FBtr0111007,FBtr0111006,FBtr0087415,FBtr0087416	3	4	4	113	2R	11025934	11026024	CAAATCTGCAACAACTCGA		58	11026101	11026119	GTTGCTGGATTACATTGGC		59	NA	Nonspecific
Drosophila melanogaster	50	Su(var)2-HP2	FBgn0026427	FBtr0087502,FBtr0087501	3	2	2	82	2R	10498986	10499139	AACAAGTTAAACCAGCTCG		58	10498922	10498940	TTCTGACTCCGTCTTTGAG		58	NA	
Drosophila melanogaster	50	Tfb1	FBgn0033929	FBtr0087548,FBtr0087549,FBtr0087550	2	3	3	106	2R	10251345	10251363	TAACCAGCGATGAGTTCTG		59	10251490	10251509	CTTTATGTCAGCCAGAAAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8547	FBgn0033919	FBtr0087566,FBtr0087567	1	2	2	244	2R	10149672	10149993	AGTCATTCGGAACTACCAC		58	10149387	10149405	CTCGTACTCGTACATTCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13339	FBgn0033871	FBtr0087632	3	1	1	112	2R	9712740	9712758	GTGAAGTGGATCCAATGGA		59	9712833	9712852	AACTATGTTGAGGATGTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6016	FBgn0033844	FBtr0087699,FBtr0087700	2	2	2	98	2R	9379089	9379168	TTCTTCCAGTGCTTCTGTG		59	9379009	9379028	CTCTGTCACATCAATTCTGC		58	NA	
Drosophila melanogaster	50	CG4679	FBgn0033816	FBtr0087759	1	1	1	60	2R	9125033	9125051	AGAACCAGCACAGAATTCC		59	9124991	9125010	GCGTCCACAAATTCTATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4627	FBgn0033808	FBtr0087738	3	1	1	61	2R	9103016	9103035	CGCTACAAACTCCTTAATCG		58	9103058	9103077	AAGAGACCCTCAAACAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13324	FBgn0033789	FBtr0087796	2	1	1	134	2R	8937018	8937036	AACGATTTCCTCCTCTCAC		58	8936902	8936921	GTTGTTCTTGAAGTTGTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sans	FBgn0033785	FBtr0087790,FBtr0087791	1	2	2	108	2R	8827580	8827667	CTGCCAGTATTTCAGAAGC		58	8827739	8827757	AGGTGAGTTTACGGAATGG		59	NA	
Drosophila melanogaster	50	CG17019	FBgn0033783	FBtr0087806	1	1	1	82	2R	8821000	8821019	TCTATTAAAGCTCAAGCCCA		58	8820859	8820955	CCTCTTTCTCTAGACAGCC		58	NA	
Drosophila melanogaster	50	CG8771	FBgn0033766	FBtr0087874	1	1	1	88	2R	8572120	8572262	CAGTCGGGAAGAATTAACAC		58	8571992	8572010	CCTCTAGTTGGCTCTTGAC		59	NA	
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835	1	6	8	107	2R	8504611	8504629	GCATATTTACCCACTGAGC		58	8504697	8505312	GACGTCTACCATTCTAAATCTG		58	NA	
Drosophila melanogaster	50	CG13154	FBgn0033736	FBtr0087953	2	1	1	60	2R	8314661	8314680	CGAATAAACTTCGACGACTC		58	8314620	8314641	GATTATCCGGAATCTTTACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33013	FBgn0053013	FBtr0087908	3	1	1	82	2R	8251798	8251889	TGATGAAGTACTACAGACAGC		59	8251933	8251951	TGGTATAATTCCAGCCTGC		59	NA	
Drosophila melanogaster	50	Cam	FBgn0000253	FBtr0088002,FBtr0088001	3	2	2	105	2R	8156852	8156870	AAATCTGGGCGAGAAACTC		59	8156936	8161287	CATCATAGTCACGAATTCTTCG		59	NA	
Drosophila melanogaster	50	CG13185	FBgn0033661	FBtr0113072	2	1	2	92	2R	7765781	7765854	CCAAAGTAACTACAGAGGCA		59	7765708	7765728	CCTCGATGATCTTACCTAGAG		58	NA	
Drosophila melanogaster	50	Egm	FBgn0086712	FBtr0088090	1	1	1	234	2R	7505191	7505209	AAGTACTTTACCCTGCGAC		59	7504914	7504932	TGAAGAGTGGATTTCTGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	tou	FBgn0033636	FBtr0113066	1	1	5	162	2R	7469645	7470533	GCATTATGAAAGCGTATGCA		59	7469502	7469520	TTATTGATTGCGCTCTTGC		59	NA	
Drosophila melanogaster	50	tou	FBgn0033636	FBtr0088094,FBtr0088092,FBtr0113066,FBtr0088091,FBtr0088093	2	5	5	103	2R	7469205	7469223	AGGACAAGTTGCTACTGTG		59	7468891	7469138	CTCGTAGCAGTACCAATCG		59	NA	
Drosophila melanogaster	50	CG34054	FBgn0054054	FBtr0100109	1	1	1	60	2R	7297431	7297452	TATCACCGAATGTAGTAAGCTC		59	7297392	7297411	CAGTTGGCCATAATCATACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or47a	FBgn0026386	FBtr0088111	1	1	1	60	2R	7139096	7139185	CTTCTCATCGATTGTTCGC		58	7139208	7139227	TTAGGAGAATGATCTCAGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	shn	FBgn0003396	FBtr0088099,FBtr0088100,FBtr0088101,FBtr0088098	1	4	4	101	2R	7098299	7098384	GGCAAGCAAGTAAATGTGG		59	7098446	7098467	CTTCTTCTGCAACAATATCTCC		59	NA	
Drosophila melanogaster	50	luna	FBgn0040765	FBtr0088210	1	1	1	256	2R	6877498	6877516	CAAATGCAGAATAACGGCA		59	6877198	6877216	AATTGGCACTTGTGTATCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Rpb5	FBgn0033571	FBtr0088237	2	1	1	60	2R	6785887	6785906	CCAGGTGGTTAAGATCATCC		59	6785846	6785867	CAATCGATAGGATATGTACCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	1	12	12	88	2R	6499952	6500255	GCATATGGACATGTATAACTCG		58	6500304	6500322	TATAGTGCGGTTCCTTCTG		58	NA	
Drosophila melanogaster	50	CG12895	FBgn0033523	FBtr0088314	2	1	1	184	2R	6324622	6324640	AGTTCCGGAATATCCTGTC		58	6324394	6324412	TGACACCATTGATCAACTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG12901	FBgn0033513	FBtr0088354,FBtr0088353,FBtr0088355	3	3	3	127	2R	6244081	6244100	ACAAAGATAAGGCCAAGGAC		59	6243973	6243993	TTCTTATCCCTATTCCTTGCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Obp46a	FBgn0033508	FBtr0088359	1	1	1	62	2R	6199173	6199191	ATACGAGACGGATGAAGAG		58	6199078	6199096	CTGTTGAAACTGCACTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1688	FBgn0027589	FBtr0088495	3	1	1	219	2R	5663322	5663340	CAGAAGAAAGTCCACACCA		59	5659923	5660050	CAATTGACAGGCATCTCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Uba1	FBgn0023143	FBtr0088499	3	1	1	96	2R	5577416	5577498	GATTCCATCAAGAAAGCTCTG		59	5577340	5577361	GGTTAACATATTGATCCTCCCA		59	NA	
Drosophila melanogaster	50	CG1814	FBgn0033426	FBtr0088523,FBtr0088521,FBtr0088522	2	3	3	81	2R	5468496	5468576	AAATCTACTACGAGGGTTCG		58	5468619	5468638	TGATCTCCGAAATAGAGCAC		59	NA	
Drosophila melanogaster	50	CG12932	FBgn0033419	FBtr0088514	2	1	1	62	2R	5411740	5411759	TGCCATACTCGAAACTAGAC		59	5411784	5411802	TTACTTGTCGCTTATGCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Phax	FBgn0033380	FBtr0088569,FBtr0088568	1	2	2	102	2R	5003141	5003159	AGTGAAGATAAGCAACCGG		59	5003283	5003301	TATTGATCTCGTGGGTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8642	FBgn0033312	FBtr0088729	1	1	1	61	2R	4501395	4501413	GGAAAGATAGCCGAGAGTG		59	4501352	4501370	TGCAGCTTGTTTATCTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6a14	FBgn0033302	FBtr0088734	1	1	2	71	2R	4453321	4453339	CACCTCTGCCTATAGTTGG		59	4453268	4453286	TTCTTTGGTTGATATCGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30360	FBgn0050360	FBtr0088751,FBtr0088750	2	2	2	60	2R	4353596	4353614	GATACGCGAGTTATCATGG		57	4353635	4353656	CATAGAACTGCATCACATAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lig	FBgn0020279	FBtr0100575,FBtr0088775,FBtr0088776,FBtr0088774	3	4	4	81	2R	3961935	3961953	TGCCATACTATCAGCAACC		59	3961997	3962988	TAATATCCCTGCACATGTGG		59	NA	
Drosophila melanogaster	50	CG2065	FBgn0033204	FBtr0088922	2	1	1	60	2R	3551754	3551772	AGAACTGGACTTGAGTTCG		59	3551795	3551870	CTCTTTCTTGAATCCAGCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1621	FBgn0033182	FBtr0088984	1	1	1	60	2R	3379317	3379335	TGTACATCCGCAATAACCT		58	3379275	3379293	ATATCGTTGTAGAAGCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012	1	6	7	106	2R	3293620	3293714	AAATATGACTTCAAGCCAGC		58	3287508	3293552	CCGGAACTTTCAGAATTTGG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111066	1	1	60	109	2R	3225834	3225852	GATAGATTCCGTTCATGCG		58	3219874	3225761	ATCTGGGAGGTACATTGAC		58	NA	
Drosophila melanogaster	50	CG12842	FBgn0033131	FBtr0089029	3	1	1	63	2R	2927053	2927072	CCTATCCTTGTTATCTGTGC		57	2927098	2927116	CCAATGTGCACATTCAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)01289	FBgn0010482	FBtr0110900,FBtr0086137	2	2	4	83	2R	2622092	2622242	TATACGAAGGTGAACTTCAGC		59	2622029	2622047	TCACATCATCTTCATCGCC		59	NA	
Drosophila melanogaster	50	CG9422	FBgn0033092	FBtr0086120,FBtr0086121	3	2	2	104	2R	2579666	2579684	AGATTATAGTCACACGCCA		58	2579808	2579826	AATCAGTGGACGTATTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9422	FBgn0033092	FBtr0086120,FBtr0086121	1	2	2	99	2R	2579672	2579690	TAGTCACACGCCAAATACC		59	2579808	2579827	AAATCAGTGGACGTATTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9410	FBgn0033086	FBtr0086116	3	1	3	61	2R	2556768	2556786	CTCCAAACCGTAACATTGC		59	2556809	2556829	ACAGGATAAGAGCAATCTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	EcR	FBgn0000546	FBtr0086012,FBtr0086011,FBtr0086008,FBtr0086010,FBtr0086009	2	5	5	80	2R	1981446	1981524	GCGTATAATGAGTCAACCC		57	1981384	1981403	GTGAGTATGGTTATCTCGGT		58	NA	
Drosophila melanogaster	50	Or42b	FBgn0033043	FBtr0086051	2	1	1	61	2R	1684849	1684870	TCTTTCAGATATCCATGAGCAG		59	1684745	1684763	GGTTATCACGGAGAAAGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	snoRNA:Psi18S-525j	FBgn0083029	FBtr0113555	1	1	1	60	2L	20421993	20422012	AAATAAGTAGACGAACGGCA		59	20422035	20422053	AAACACAAGTCATCTGCGA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1428	FBgn0032967	FBtr0085929	3	1	1	60	2L	21907655	21907673	CATAGTCTGATCACTCCGT		58	21907696	21907715	GACCGAGAGCTATAACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9253	FBgn0032919	FBtr0081468	3	1	1	287	2L	21143660	21143679	AAGGATGTAATTGGCCTAGC		59	21144118	21144136	TAGATGATCAACCAAGCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14402	FBgn0032894	FBtr0081425	3	1	1	60	2L	20849956	20849974	CAAACGGGAATTCTTCAGC		59	20849998	20850016	CGAACTCTGGGATAAACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	szar	FBgn0032885	FBtr0089945	2	1	3	191	2L	20790710	20791237	GCTATACTTGCTACATGCG		58	20790468	20790486	CTTGGGATGGTATGAGTCC		59	NA	
Drosophila melanogaster	50	CG15477	FBgn0032865	FBtr0081380	2	1	1	228	2L	20544651	20544670	GTTCTAATTTGGTGGGACTG		58	20544861	20544879	ATCCGTATACGGACATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sick	FBgn0085372	FBtr0112547	1	1	3	104	2L	19929347	19950418	CAACCAATGTAAGTTCACAC		57	19950484	19950503	GCTACCCAGATAAATATGCC		57	NA	
Drosophila melanogaster	50	CG10466	FBgn0032822	FBtr0081291	3	1	1	72	2L	19792588	19792606	GATAGGACACTAAGGGTCG		58	19792642	19792660	TTTCCTCGTCCATCTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	swm	FBgn0002044	FBtr0081244,FBtr0081245	2	2	2	184	2L	19496695	19496714	TGCGAATAACAAGTCTACCC		59	19496861	19496970	CGCCGAAGTTCTTAAAGTG		59	NA	
Drosophila melanogaster	50	CG13083	FBgn0032789	FBtr0081241	3	1	2	141	2L	19488277	19488295	AAGAACATTGAAAGGACGC		58	19488456	19488475	CATAGACGTTCTCGTATCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10495	FBgn0032750	FBtr0081150	3	1	1	60	2L	19064547	19064566	TTCTTTACGGTATTCAGAGC		57	19064589	19064607	CCAGTTCCAAATCTTCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10431	FBgn0032730	FBtr0081134	2	1	1	145	2L	18977189	18977276	TCTTGGAGATGATCTGAATCTC		59	18977382	18977400	AAGTAACCTTGACTAGCGC		59	NA	InUTR
Drosophila melanogaster	50	CG10428	FBgn0032724	FBtr0081132	1	1	1	165	2L	18949223	18949241	TTTACGGAGTTCCCAACTC		59	18949370	18949444	TCTTGCAATAAGCTCTCGG		59	NA	
Drosophila melanogaster	50	CG31751	FBgn0086909	FBtr0081092	3	1	2	63	2L	18679132	18679150	CGATCGCAACTTCTTTGTC		59	18682280	18682298	ACAGTGGGTTACAATGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10413	FBgn0032689	FBtr0081080	2	1	1	103	2L	18602866	18603715	AATAACACGATACCCGTTCC		59	18602782	18602801	GATCCTAGATTATCCCGCAG		59	NA	
Drosophila melanogaster	50	RpS26	FBgn0004413	FBtr0081091	1	1	3	176	2L	18443098	18443116	CTAAATGCTAATGGCCGTG		58	18442940	18442960	GATGACGAACTTCTTGATTGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Socs36E	FBgn0041184	FBtr0081041,FBtr0081040	3	2	2	281	2L	18141991	18142009	AAGTACGTTACAACTGCAC		57	18141235	18141747	TTATTGCTTCTGGAAACTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17928	FBgn0032603	FBtr0080908	1	1	1	122	2L	16792164	16792184	CAAGGAACTACAAGTTCACTC		58	16792268	16792382	CAAGATGGAGAAACTCGGT		59	NA	
Drosophila melanogaster	50	mRpL4	FBgn0001995	FBtr0080843	3	1	1	60	2L	16328291	16328309	GATCTGGGCTATGTCAACC		59	16328249	16328269	GCTTCAGCATAGAATAGACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17328	FBgn0028895	FBtr0080829	1	1	1	60	2L	16300603	16300621	ACAATATCTGGGCATTCTG		57	16300645	16300663	CACAAAGTCCGTATTGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ca-alpha1D	FBgn0001991	FBtr0090006,FBtr0090004,FBtr0090005	2	3	4	83	2L	16186142	16189035	TATAACAATGTCTACGCACCC		59	16189080	16189098	CTGATCGTAGGGACTAGCT		59	NA	
Drosophila melanogaster	50	sna	FBgn0003448	FBtr0080739	2	1	1	72	2L	15477964	15477982	GGATCTATCCCTGAAACGG		59	15477910	15477928	ATAGTCACGTTTCGGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mol	FBgn0086711	FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015	1	5	5	81	2L	14984076	14984208	CTAGTCATATTAATCACTCGCC		58	14984016	14984034	GTGAGAAGGCTTTGTATGG		58	NA	
Drosophila melanogaster	50	ics	FBgn0028546	FBtr0080511	1	1	1	107	2L	13639939	13639957	AAGATGGAGGAGAATCCCT		59	13639787	13639874	GTTGTAGATGATCTTATAGGTCTCC		59	NA	
Drosophila melanogaster	50	Nnp-1	FBgn0022069	FBtr0080473	3	1	1	60	2L	13364778	13364799	CAACTACGATGAGGTTATTAGC		58	13364739	13364758	GTAATTCACCTTCTTCTGCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ACXC	FBgn0040508	FBtr0080413,FBtr0100494	3	2	2	91	2L	12912877	12912954	CTTTACGTACAGCACTATAACG		58	12913006	12913024	AAATTGATGCTCAACACGG		59	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090025,FBtr0090020	2	2	17	141	2L	12726989	12727008	ATTCCAAGCTTTCCAAATCG		59	12727112	12737411	GAATGACGTGAAACCTTGG		59	NA	
Drosophila melanogaster	50	CG17024	FBgn0032437	FBtr0080371	3	1	1	60	2L	12454255	12454273	ATGAAGGTTGAATTCGGTG		58	12454297	12454315	AGTCAATTATGTCCGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4983	FBgn0032371	FBtr0080253	1	1	1	60	2L	11653514	11653535	CCAACAAGTCAAATGTACTACC		59	11653554	11653574	GCTTCCGAATGAATATAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6509	FBgn0032363	FBtr0080246,FBtr0080247	1	2	2	80	2L	11511227	11511245	TCAACGGTGTATGATGAGG		59	11510837	11511185	CACATACCTTAGAGTCTCTGC		59	NA	
Drosophila melanogaster	50	salm	FBgn0004579	FBtr0089913	2	1	1	81	2L	11436265	11436284	GAAGCAACACATGCTAACTC		59	11435916	11436224	CTCACTCATATACTTTACGGCA		59	NA	
Drosophila melanogaster	50	Porin2	FBgn0069354	FBtr0080184	1	1	1	163	2L	10846348	10846366	AATTTGACGTTGGCAACAC		59	10846140	10846158	CTTGGTTACCTCGATACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Lip2	FBgn0024740	FBtr0080123	2	1	1	170	2L	10702988	10705038	AGTTTATCAAGAAACGCCAG		58	10702775	10702796	GTAGATACTCGTAGTTAAAGGC		57	NA	
Drosophila melanogaster	50	Myo31DF	FBgn0086347	FBtr0080035,FBtr0080036	3	2	2	102	2L	10494502	10494521	CTGGATATTTACGGCTTCGA		59	10494359	10494440	GCACCAGTTCTATGAATAACTG		59	NA	
Drosophila melanogaster	50	CG5343	FBgn0032248	FBtr0080044	1	1	1	64	2L	10430580	10430598	CAACGACATACAAAGCCTC		58	10430534	10430552	ATGTTATGAACGTGGTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LSm-4	FBgn0067622	FBtr0091657	1	1	1	63	2L	10404635	10404653	TGTCAAAGTTGCAATGGAG		58	10404530	10404549	GGTTTATCAATTTGCACGGT		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG5731	FBgn0032192	FBtr0079959	3	1	1	82	2L	10207544	10207563	AACTCCATCGGATATTTCGG		59	10207418	10207499	TTTCGTAAAGGTCCTCCAC		59	NA	
Drosophila melanogaster	50	Ripalpha	FBgn0032189	FBtr0079962	3	1	1	200	2L	10200226	10200298	TCCAATTGTCCGAACTCAG		59	10200044	10200062	TAATCTGACAAACTGGGCA		58	NA	
Drosophila melanogaster	50	CG31711	FBgn0051711	FBtr0079880	2	1	1	107	2L	9926998	9927075	CTCTTCCAGGTCCTAACTG		58	9927146	9927164	TATCTTGATGAGATCCGGC		58	NA	
Drosophila melanogaster	50	CG9573	FBgn0032089	FBtr0079779	1	1	1	60	2L	9013257	9013275	GTTGAAGTTTCCATGCCTC		59	9013215	9013235	CGTAAGTAGTAGATAGCAGCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp29Fb	FBgn0032075	FBtr0079755,FBtr0079756	1	2	2	80	2L	8939019	8939127	CAATCTATGCTAGAGTGTTGC		58	8939168	8939187	CAGAGTGAAGTTCACATTGG		58	NA	
Drosophila melanogaster	50	CG8486	FBgn0031993	FBtr0079583,FBtr0079582	1	2	3	133	2L	8183521	8183539	CTTTGTGAATCGCATCCTG		59	8183702	8184140	GTTCACTTTCATCGCTCTC		58	NA	
Drosophila melanogaster	50	Cka	FBgn0044323	FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538	3	4	4	100	2L	8036254	8036272	ACATCAATGGAAACGAGAG		57	8036394	8036413	GTCCACGATTATTTCATCGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	Cka	FBgn0044323	FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538	1	4	4	98	2L	8036254	8036272	ACATCAATGGAAACGAGAG		57	8036391	8036411	CCACGATTATTTCATCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Snoo	FBgn0085450	FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718	1	4	5	60	2L	7894794	7894812	GAATAAAGCTGCAGGTTGG		59	7894752	7894772	GGACTTTCCTCATTCTCTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Slob	FBgn0024290	FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518	2	4	4	80	2L	7649009	7649027	TGAGGACTTAGTCCTTTGC		58	7648879	7648968	GGCTTAATTGTACTGAAACAGG		59	NA	
Drosophila melanogaster	50	CG15819	FBgn0031919	FBtr0079457	2	1	1	82	2L	7474306	7474324	AACAATGGAAACGCAAGAC		59	7474124	7474142	CTCTGAAACCTTGGATTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	SP1070	FBgn0031879	FBtr0079354	1	1	1	80	2L	6973679	6973757	TACATGAAGGATGGTCTGC		59	6973617	6973638	GTCTTCTTTAGTTCCATAGAGC		58	NA	
Drosophila melanogaster	50	CG11188	FBgn0031851	FBtr0079299	2	1	1	68	2L	6718520	6718538	TTCATCCAAGCTACTGCAG		59	6718570	6718588	TTCATCTCGGAGTATTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13982	FBgn0031811	FBtr0079256	2	1	1	172	2L	6413222	6413240	ATCTCTTATCGAGGACCAC		57	6413432	6413450	GTTCTGCATTTGAATGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13994	FBgn0031772	FBtr0079188	1	1	1	145	2L	6063078	6063096	TAATTGACGAAACCGATGC		58	6063205	6063223	CTTCTTGCGATTCAAATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ade2	FBgn0000052	FBtr0079220,FBtr0079219	2	2	3	117	2L	6044341	6044436	ACATTCCAGGTTACAAACAG		58	6044243	6044261	TTATTTCCGTAGTCGGAGG		58	NA	
Drosophila melanogaster	50	CG31647	FBgn0051647	FBtr0079131	1	1	2	91	2L	5439277	5445113	GAAGGAGACTACACGACAG		59	5437080	5437099	CTAAACTTTGAAGGAGCTGC		59	NA	
Drosophila melanogaster	50	tkv	FBgn0003716	FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086	1	4	4	224	2L	5221390	5221470	TTCTCATGTGCAAGGTAGC		59	5221184	5221202	ATAAGCTAGCCACGATCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7742	FBgn0031690	FBtr0079092	1	1	1	84	2L	5213324	5213400	GCTACATGACTACGATATTGAG		58	5213261	5213279	GAAGACCAGTTTGTCAACG		58	NA	
Drosophila melanogaster	50	CG31918	FBgn0031678	FBtr0079028	2	1	1	60	2L	5057723	5057742	AGAAGTTTCAGTGGATGGAG		59	5057682	5057700	ATGATGTCATTGAAGCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15629	FBgn0031630	FBtr0077383	1	1	1	80	2L	4814827	4814845	ATTGCCCTAAACTTTGCTC		58	4815023	4815042	ATCCACAGTTGTCTTTATGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Psf2	FBgn0031599	FBtr0077461	2	1	1	62	2L	4386507	4386525	TGCAAAGCTAGACAACCTC		59	4386463	4386481	GAATAGGGCAGAATGGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NTPase	FBgn0024947	FBtr0077680,FBtr0077682,FBtr0077683,FBtr0077681	3	4	4	142	2L	2881427	2881445	CCTTACCTTCATCTCGACG		59	2881242	2881260	ATTTCTCGTCGCTAGTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	oho23B	FBgn0015521	FBtr0077621,FBtr0077624,FBtr0077622,FBtr0077623	1	4	4	68	2L	2856560	2856643	CATTACCAAGAACTTCTAAGCG		59	2856671	2856690	GGGAAATCGCTTTATTACCA		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG3104	FBgn0031473	FBtr0077687,FBtr0077686	3	2	2	285	2L	2852250	2853261	TGTCGCTTAAGAAGGAGAC		59	2850468	2850486	ATCAGAATCTTCACCACGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17237	FBgn0031410	FBtr0077801	1	1	1	60	2L	2288674	2288692	TAGGATCAACAAAGACGGC		59	2288632	2288653	CCCATAGATAATGTCTTGAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GlyP	FBgn0004507	FBtr0100485,FBtr0077828	2	2	2	77	2L	2134899	2134917	ACAACAACCACGTAAACAC		58	2134957	2135046	CATCGTTGAAGAACTTGAGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5118	FBgn0031317	FBtr0077979	2	1	1	97	2L	1171783	1171801	TTATAAGCGGAAACACCGA		58	1171634	1171722	GTGAATGGGTAGCAATCCT		59	NA	
Drosophila melanogaster	50	PNUTS	FBgn0053526	FBtr0091486,FBtr0091489,FBtr0091487,FBtr0091488	1	4	4	81	2L	872013	872033	CAATCGCCTCAAGATAAACTC		59	872076	872221	TAGAATGCGTACACCTTCG		59	NA	
Drosophila melanogaster	50	dock	FBgn0010583	FBtr0078013,FBtr0078015,FBtr0078014	1	3	3	101	2L	831534	831552	TATTATGGAGCCATCACCC		58	831616	831722	GTCTCCCATGTTAGTCTCAC		59	NA	
Drosophila melanogaster	50	CG13690	FBgn0031252	FBtr0078090	2	1	1	60	2L	419207	419225	AACACCAAGGAATATGCGA		59	419165	419183	TGTTCGGCGATATGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)gl	FBgn0002121	FBtr0078171,FBtr0078170	2	2	6	138	2L	15703	17062	TTATCGTAAGACGGCACAG		59	15583	15601	ACCGTACAATTCAACTCCG		59	NA	
Drosophila melanogaster	50	Mgstl	FBgn0025814	FBtr0077242	2	1	2	67	X	20913603	20913623	TGGTCGGCTATATTGATACTC		58	20913652	20913670	GTAAAGAAGCGCATGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14221	FBgn0031042	FBtr0074764	2	1	1	88	X	19513568	19513587	TTCTTTAACGGTGACAATCC		58	19513416	19513517	TTGTCGGTAGGAACATACG		59	NA	
Drosophila melanogaster	50	vav	FBgn0040068	FBtr0074677,FBtr0113316,FBtr0074678	1	3	3	202	X	19164841	19164859	ACAGAATCCGGTAAGTGTG		59	19165025	19165116	TATCATCGGTCTTTAGGCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	bnb	FBgn0001090	FBtr0074659,FBtr0074656,FBtr0074658,FBtr0074657	3	4	4	63	X	18689036	18689054	GATGAGTCCTCAGAGTCCA		59	18688991	18689012	ACTATTCCTAGTTCTCCTTCGA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG32560	FBgn0052560	FBtr0113438,FBtr0074457	3	2	2	164	X	17640916	17641005	GTCATGTCCACCATAGATCTC		59	17641131	17641149	CGAGTAGATCCAAAGGTCG		59	NA	
Drosophila melanogaster	50	CG8289	FBgn0030854	FBtr0074484	3	1	1	99	X	17528632	17528650	AATCGTATTGAACGCTCCT		59	17528331	17528351	TTCCTACATGGATTTCCTTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG8568	FBgn0030841	FBtr0074436	2	1	1	82	X	17345164	17346090	GATTCGATCAGAAAGTGTGC		59	17345101	17345119	CCTGCCATTAAGAAAGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5070	FBgn0030824	FBtr0074389	2	1	1	75	X	17097390	17097408	GGATCTGGCTATGGATCAG		58	17097446	17097465	ATACCTTGATCACCTTCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9784	FBgn0030761	FBtr0074289	2	1	1	60	X	16492126	16492147	ATTTCCGGATAACATATCCCTC		59	16492087	16492105	CTTATCCACCGTCACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12481	FBgn0030542	FBtr0100281	1	1	1	60	X	14081464	14081482	TTATCACTTCGTCACCGAG		59	14081503	14081524	CGGTTTGATGTAATAGTTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NFAT	FBgn0030505	FBtr0073808,FBtr0112980	2	2	2	139	X	13549482	13549568	AATCATCTGCACTCAACCA		59	13549671	13549689	ATGTCTCCTGAAACACCAC		59	NA	
Drosophila melanogaster	50	CG32647	FBgn0052647	FBtr0073703,FBtr0073702	1	2	2	114	X	12670827	12670915	ACAAACTGTACCAGGAACG		59	12670731	12670749	AGGAATCCCAGCATTATGG		59	NA	
Drosophila melanogaster	50	CG15307	FBgn0030192	FBtr0071442	3	1	1	84	X	10238018	10238036	ATAGGAGGCGTAACTACGA		59	10238083	10240894	GACGATCGGTAATTAAGCCT		59	NA	
Drosophila melanogaster	50	CG17440	FBgn0030120	FBtr0071328	1	1	1	87	X	9162927	9163011	TATTTCAGATTCTGCCGCA		59	9162858	9162876	TTGAGCTCTAGATGCTTGC		59	NA	
Drosophila melanogaster	50	CG32727	FBgn0052727	FBtr0071056	2	1	1	104	X	7301527	7301604	GCTTTCAGAAACGGATGTC		59	7301672	7301690	TTCGATCCGGATGTTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33691	FBgn0064122	FBtr0091671,FBtr0091673	2	2	3	60	X	6771757	6771777	CGCTAGCTAGCAATAATTCAG		58	6771798	6771817	TTGTTATTCCGTCGTACTCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32750	FBgn0052750	FBtr0070881	2	1	1	167	X	6089883	6089901	ATAGCCACCTTTACAACGG		59	6089676	6089752	AAATTGAGAGGCTGTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5928	FBgn0029836	FBtr0100295,FBtr0070871	2	2	2	80	X	5962699	5963093	CTCAACACCTTTATTCAGAAGC		59	5963131	5963152	TCCTATGATATCCAATTGAGCC		59	NA	
Drosophila melanogaster	50	CG15766	FBgn0029813	FBtr0070832	1	1	1	150	X	5709770	5709788	GATTGCCGATGACATTGTG		59	5709638	5709656	TAGCAGAAACTCCTTGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pon	FBgn0025739	FBtr0070681	2	1	1	198	X	4530753	4530771	AAGTCCATAGCTGATCTGG		58	4530931	4531145	CCTCATATGGATTGAACTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32793	FBgn0052793	FBtr0070550	3	1	1	63	X	2824349	2824367	TGACTTTATCATCCACCCG		59	2824394	2824412	CTGGATCTCCTCTAGGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	boi	FBgn0040388	FBtr0114528	1	1	3	148	X	2340562	2340580	AAGCGGACTTTGTTACCTC		59	2340218	2340452	GAACATTGGACTCTTATCGGA		59	NA	
Drosophila melanogaster	50	CG2924	FBgn0023528	FBtr0070412	3	1	2	96	X	2163040	2163058	TCAGATCCTCAATTCCAGC		59	2161318	2162981	ATACGTTTCCGTTATGTTGG		58	NA	
Drosophila melanogaster	50	CG18031	FBgn0023550	FBtr0070423	1	1	1	100	X	2097004	2097023	CAACACGTATACGTTTACCA		57	2096868	2096943	CAAAGAGAACTATGGAAGGAC		58	NA	
Drosophila melanogaster	50	b6	FBgn0024897	FBtr0070272	2	1	1	159	X	1581301	1581319	GATGCGATTCACTAACCAC		58	1582605	1582697	CAACGGGTAGTTCAATCTG		58	NA	
Drosophila melanogaster	50	CG13358	FBgn0026874	FBtr0070144	2	1	1	60	X	699380	699399	ACTATATGGACTACCTGTGG		57	698941	699357	GTATTGTGGAGCCTATTCG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG40626	FBgn0085504	FBtr0113916	1	1	1	61	U	9898120	9898138	GCTATAAACTCGGCAAGGT		59	9898163	9898181	CTATGGCAGATCGTACACC		59	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG40530	FBgn0085494	FBtr0113904	1	1	1	143	U	8030062	8030080	CAGAGGACGAATACGTCTC		59	8029937	8029956	GGCATTGATGACAGAATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40820	FBgn0085523	FBtr0113936	1	1	1	222	U	7044978	7045145	GTAAGACACGTTCAACCAG		58	7043624	7043642	TAATCGATAGTGGGCTTGC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CR14638	FBgn0037223	FBtr0113190	2	1	1	121	3R	70296	70371	CGCATCTTTCTAATTCTAAGCC		59	70452	70471	TATAGCCTTAGAAAGCTGGG		58	NA	
Drosophila melanogaster	50	CG31038	FBgn0051038	FBtr0085498,FBtr0085499,FBtr0085497,FBtr0085494	2	4	6	81	3R	25723358	25727914	GAAGGAAATGAACGGACTG		58	25727959	25727977	GAACTCTTGGATCGATTCG		57	NA	
Drosophila melanogaster	50	CG7789	FBgn0039698	FBtr0085483	3	1	1	271	3R	25629389	25629471	GGAGTATACACAGGGACAC		58	25629706	25629724	TCAGAACTTCTGTGGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sirt7	FBgn0039631	FBtr0085364	1	1	1	122	3R	24882027	24882265	AAGGGTCTCGATGATACTG		58	24882351	24882369	TATATCTCTACCCGCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1894	FBgn0039585	FBtr0085290	1	1	1	78	3R	24310405	24310423	TAAAGTATCAGCCGTTGGG		59	24310465	24310564	TTAGTCAATTGCAGGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4884	FBgn0039565	FBtr0085264	2	1	1	139	3R	23783454	23783535	CGAGAAACAAAGTGGAACTG		59	23783282	23783301	ATGGGAAGGATTCGATTGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12259	FBgn0039557	FBtr0085270	1	1	1	60	3R	23746110	23746128	CGTCAAGAATGGGTAATGC		58	23746068	23746086	TGAACGTGATGGAGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12877	FBgn0039544	FBtr0100446,FBtr0085223,FBtr0085222	3	3	3	80	3R	23536242	23536338	GATTATACAGGAGAGCGAGG		59	23536379	23536399	CGCAGATAATACTTGATGAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6059	FBgn0039491	FBtr0085130	1	1	1	223	3R	22948908	22948926	GATCTCCCGTTTGAATGAC		58	22948645	22948721	ACTTCAAGGCAAGTGTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085140	3	1	12	91	3R	22893080	22893101	GTCAGCATCTAATCACTTACAG		58	22892191	22892336	GGAAGACAAAGGTATCCGA		58	NA	
Drosophila melanogaster	50	NepYr	FBgn0004842	FBtr0085100	3	1	1	98	3R	22855542	22855560	GTTTATTGCACTTGCCACC		59	22855622	22856386	CGGCAAATGTATTTCTCGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG14248	FBgn0039445	FBtr0085052	1	1	1	140	3R	22475236	22476722	AGTGAAAGTTGAGGTGGAG		59	22475114	22475132	GTCACTACCGTACCATGTG		59	NA	
Drosophila melanogaster	50	CG31081	FBgn0051081	FBtr0085033	3	1	1	78	3R	22460648	22460722	AGTGTTTCTTACGTTGTTGG		58	22460763	22460781	CACAGGTCCTCCATAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HLHmgamma	FBgn0002735	FBtr0084955	1	1	1	68	3R	21825782	21825800	GATCTTATGGTTGCCACCT		59	21825832	21825850	CAGGATATCGGCTTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5959	FBgn0039387	FBtr0084940	3	1	1	82	3R	21724934	21724955	CACATACACGGATTTACATTCC		59	21724998	21725083	TCCAGCTCCTGAATATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10553	FBgn0039324	FBtr0084853	3	1	1	166	3R	21142945	21143024	AAATGATCTGCGCATTGTC		59	21142797	21142817	GATCGACAAAGTAGGTATCCT		58	NA	
Drosophila melanogaster	50	CG5728	FBgn0039182	FBtr0084632	3	1	1	83	3R	20156574	20156594	CTCTAACAGTTTCAGCAAAGC		59	20156449	20156532	CATTTAAATAGCCTTCGACCAG		59	NA	
Drosophila melanogaster	50	CG5515	FBgn0039163	FBtr0084574,FBtr0084575	1	2	2	60	3R	20014285	20014305	CAACTACAAGGAAGATCAGAC		58	20014245	20014263	ATCGCCACAGTATATGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mpk2	FBgn0015765	FBtr0084580	1	1	2	169	3R	19977709	19977824	AATGATATGCGCATTCGTG		59	19977458	19977576	TTAATGGTGCCTCTGTTCC		59	NA	InUTR
Drosophila melanogaster	50	CG13602	FBgn0039127	FBtr0110793,FBtr0084521	2	2	2	60	3R	19753915	19753933	GCATCATCCCTTTATACGG		57	19753873	19753891	AAAGGTGTTGTAGAGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16710	FBgn0039101	FBtr0084438	2	1	1	87	3R	19509028	19509046	AAGCATAGGCACTACATGG		59	19509097	19509253	ACTTATGGTTGCGTACTGG		59	NA	
Drosophila melanogaster	50	CG13836	FBgn0039060	FBtr0084370	1	1	1	61	3R	18995836	18995854	ATAAATCGGAACTGGTGGG		59	18995879	18995897	CTTATCCTTCTCATCGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6726	FBgn0039049	FBtr0084349,FBtr0084348	2	2	2	95	3R	18918259	18918330	GACTCTTTGGCATCTTCGT		59	18918388	18918407	ACCACATAGTTCAGCTTCTC		59	NA	
Drosophila melanogaster	50	CG34375	FBgn0085404	FBtr0112607	1	1	1	95	3R	18832381	18832400	GGCATTAATCAACAATCGCT		59	18828724	18832323	TGGTTTGATGACCTCAAGG		59	NA	Nonspecific
Drosophila melanogaster	50	tin	FBgn0004110	FBtr0084086	3	1	1	289	3R	17206635	17206654	CATCTACGGTTCAGATGAGG		59	17207331	17207352	GATTCTGGAACCAAATCTTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	ETHR	FBgn0038874	FBtr0084054,FBtr0084053	1	2	2	60	3R	17084707	17084725	ATAGTCATCATGCTGCTGG		59	17085196	17085214	TCTTCACAATCACGATGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3353	FBgn0038869	FBtr0084108	2	1	1	126	3R	17043428	17043505	AAAGTCGGAGAATTTGCTG		58	17043320	17043338	CAATGTCGTTGGAATAGGG		58	NA	
Drosophila melanogaster	50	CG10825	FBgn0038860	FBtr0113258	3	1	3	121	3R	16956616	16956636	CGTGTGCAGAAATACATACAC		59	16956795	16956813	CTGAGCATTGAGACTCCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	sec15	FBgn0038856	FBtr0084034	3	1	1	72	3R	16932409	16932428	TTAAGTGCTACGGTTACACC		59	16932292	16932376	ACCTCATTATAATGATCCCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10887	FBgn0038773	FBtr0083864	1	1	1	123	3R	15940786	15940860	CATTCAATAGGAGGAGCCC		59	15940945	15940965	GGAACACTATTTGCTGTTGAG		59	NA	
Drosophila melanogaster	50	trem	FBgn0038767	FBtr0083840	3	1	1	81	3R	15855663	15855681	CAGAACGTTTACCTACTCG		57	15855541	15855618	ACAAAGATCACAGACATGC		58	NA	
Drosophila melanogaster	50	CG11453	FBgn0038734	FBtr0083791	1	1	1	83	3R	15609857	15609875	CTCAAGGATCATCGACTGG		59	15609920	15610000	AGTTTCGGGTACATAGTACAG		58	NA	
Drosophila melanogaster	50	CG6300	FBgn0038730	FBtr0083798	2	1	1	70	3R	15598227	15598245	ACAACTGGTACTCCAAAGG		59	15598113	15598193	GTCAGATGATAGTTGCCTG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15025	FBgn0038709	FBtr0083768	3	1	1	62	3R	15316150	15316303	AATCTAAGCCTTCTGTATCCG		59	15316108	15316132	CTATATCCTTGATACTCCTAGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gukh	FBgn0026239	FBtr0089767	1	1	4	148	3R	14839141	14839159	ATCAGAAGGAGATCCAGGA		58	14846750	14846768	TGCAGTGTCCAATAGATGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7131	FBgn0038598	FBtr0083598	2	1	2	111	3R	14113252	14113327	AAAGCTGTCCTATCAACCG		59	14113159	14113177	ATCGTGTTTCTGAGTGGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Prx5037	FBgn0038519	FBtr0083503	2	1	1	81	3R	13371568	13371643	CCCACTAGATTTCACATTCG		58	13371506	13371526	GGTGTTAATGTCATGGAACTC		58	NA	
Drosophila melanogaster	50	CG3995	FBgn0038472	FBtr0083428	3	1	1	99	3R	12868324	12868398	GAGAAGGGCCTTAAAGGAC		59	12868243	12868261	CTCCGACGAAGTAAGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ARP-like	FBgn0027095	FBtr0083283	3	1	1	81	3R	12175449	12175468	GAAGGACTACAAACAGATCG		57	12175509	12175616	GTAGTAACAGAATCTGTGTTCC		58	NA	
Drosophila melanogaster	50	CG14876	FBgn0038368	FBtr0083192	1	1	1	152	3R	11659422	11659440	TTCAATGGACCCTACATGC		59	11658994	11659306	TTTAGCTGGAATGGGACAG		59	NA	
Drosophila melanogaster	50	Surf4	FBgn0019925	FBtr0083118,FBtr0083117	3	2	2	82	3R	11170644	11170663	GATTTAAGGTCGACATAGCG		58	11170516	11170534	GAAGTCCCACAGAATGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6912	FBgn0038290	FBtr0083038	1	1	1	122	3R	10962464	10962482	GATATCAGGATGTCAACGG		57	10962103	10962200	TAAGAAAGTATCCAGGCCC		58	NA	
Drosophila melanogaster	50	CG14839	FBgn0038219	FBtr0082920	1	1	1	60	3R	10088768	10088787	GCCTCAGATCAAGTATACAC		57	10088810	10088828	CTAATAGTGCCGTCTTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9799	FBgn0038146	FBtr0082763	2	1	1	155	3R	9212601	9212679	AAAGGAAAGGTTGACAAGC		58	9212464	9212482	GAACTTGCGAACAATGACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9813	FBgn0038143	FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767	1	6	6	80	3R	9204503	9204740	TTGCCCTACATCTACAATCC		59	9204442	9204461	GTCCAGTTCACTTACATCGT		59	NA	
Drosophila melanogaster	50	CG5999	FBgn0038083	FBtr0082659	2	1	1	69	3R	8568649	8568726	CGTAATCGAAATTGGTACAAGG		59	8568601	8568619	TGAGCATTTCCGAGTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14394	FBgn0038079	FBtr0114501	1	1	6	207	3R	8521768	8521861	ATATGAAGGCAATGGATGC		57	8522797	8522815	TGAATGACCAGCAAGAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6574	FBgn0037846	FBtr0082297	3	1	1	80	3R	6687497	6687516	ATCACTTCCCAACTTATGCT		59	6687378	6687454	TATAATCTGAGTGCCCAGC		58	NA	
Drosophila melanogaster	50	CG6208	FBgn0037789	FBtr0082195	3	1	1	62	3R	5946534	5946552	AGTCTTACGGACAAGTTGG		59	5946490	5946511	CCTCTAGTGTTAATTGTACCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32939	FBgn0052939	FBtr0082085	3	1	1	92	3R	5519222	5519297	GTTGATGAGGACCAAACCA		59	5519353	5519371	ATCTGGTAGCTAGCTTCCT		59	NA	Nonspecific
Drosophila melanogaster	50	CG11975	FBgn0037648	FBtr0081960	2	1	1	131	3R	4819331	4819425	ATACTTTCCAGAGGGTGGT		59	4819520	4819538	GACTTCTTCAGGTCATCCC		59	NA	
Drosophila melanogaster	50	CG31259	FBgn0051259	FBtr0081871	2	1	1	292	3R	4351253	4351344	TTTCAAGTCGACTACCTGC		59	4351600	4351618	GGAACTTGTAGTAGCTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ctr1B	FBgn0062412	FBtr0081835	1	1	1	96	3R	4144502	4144520	ATGCTGATCTTCATGACCT		58	4144580	4144598	GATTCTTCTTGTTCCAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14606	FBgn0037485	FBtr0081603	1	1	1	80	3R	3042364	3042385	ATAATCTTTGGACTGCTACTCG		59	3042227	3042327	CCAGTAGATCATATTGGGTATGG		59	NA	
Drosophila melanogaster	50	CG1315	FBgn0026565	FBtr0081699	1	1	1	81	3R	2468968	2469597	CCGGATCTGAAGATCATCG		59	2468905	2468923	CATAGGCAATGAGGTCCTG		59	NA	
Drosophila melanogaster	50	CG1041	FBgn0037440	FBtr0081734,FBtr0110774	2	2	2	106	3R	2198948	2199033	GTGGAATTTGACCAAGAACTC		59	2198862	2198880	CCAAGGGAATGGTCTTCTG		59	NA	
Drosophila melanogaster	50	CG11459	FBgn0037396	FBtr0078623	1	1	1	60	3R	1852683	1852704	AGATGGGACTAAACAAGTTCTC		59	1852644	1852663	GACGAGCGATAATTGAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hpr1	FBgn0037382	FBtr0078667	2	1	1	169	3R	1645559	1645577	ACAACTGGAAGAACGAAGG		59	1645354	1645427	TGTTAGGTTGTCATTTCCCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14644	FBgn0037226	FBtr0078981	2	1	1	278	3R	78270	78288	AGACAGGAAATCCTCACTC		58	77955	78028	GATCTCCTTGATCTCGACC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32230	FBgn0052230	FBtr0070041,FBtr0070040	2	2	2	100	3L	23332708	23332726	TAATCCCGATGTCACTTGG		59	23334566	23334584	TGGAATAATCCCTCACAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5274	FBgn0036987	FBtr0078231	3	1	2	140	3L	20420679	20420765	CTCTAAAGTTCCACGATAAAGG		58	20420508	20420578	AATCAATGTTTCCAGTCGC		58	NA	InUTR
Drosophila melanogaster	50	CG7017	FBgn0036951	FBtr0074856	2	1	1	74	3L	20204842	20205131	GAATAGAGCTAGCGGTGTC		59	20204786	20204806	TATTCAAAGTCCTCGATCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17732	FBgn0036923	FBtr0074898	3	1	1	60	3L	19976825	19976843	CCCATATGAACACGGAGAC		59	19976867	19976885	TAGGATGGATCGTACAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8793	FBgn0036894	FBtr0074966	3	1	1	85	3L	19609174	19609192	TTTACTGAGACCTGGAAGC		58	19609013	19609128	TAACCAGTTCATTCTGAGTCTG		59	NA	
Drosophila melanogaster	50	CG14095	FBgn0036870	FBtr0074987	1	1	1	137	3L	19457372	19457390	CCAATCCTGAACAGAGTGG		59	19457253	19457271	ATAGTTCAAAGGTGCTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13698	FBgn0036773	FBtr0075137	3	1	1	96	3L	18083173	18083191	GATGATCTCATCCAGGGAG		58	18083030	18083113	TATGATGGCCAGTACACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32174	FBgn0052174	FBtr0075227	3	1	1	84	3L	17422690	17422964	GAAAGATAATCAAGTCACGCC		59	17422626	17422645	ATATCGCGTCATCAAGTAGG		59	NA	
Drosophila melanogaster	50	nxf2	FBgn0036640	FBtr0089479,FBtr0089478	3	2	2	110	3L	16571919	16571937	ATGTGGAGATCGATTTGGA		58	16571768	16571845	GATCGGGTATCATAAAGGC		57	NA	
Drosophila melanogaster	50	CG13044	FBgn0036599	FBtr0075470	1	1	1	286	3L	16296124	16296207	AAATTGTTCGTTCTCGCTG		59	16295856	16295874	AAAGTCTTCACAATGGGTG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL39	FBgn0036462	FBtr0075672	2	1	1	95	3L	14991963	14991981	TTGCAGCTTTATGTTGGGA		59	14991713	14991906	CCTGATTTGATATTGGGTCCA		59	NA	
Drosophila melanogaster	50	CG9425	FBgn0036451	FBtr0075692	1	1	2	62	3L	14788839	14788983	TACAAGGATCATCCTGCTG		58	14789009	14789027	GAAGTGAAACGGATGATGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5620	FBgn0036268	FBtr0076012,FBtr0076013	1	2	2	85	3L	12208895	12209529	AAAGCAAATAGAGGTGCCA		59	12208828	12208846	TTTGTCCTTTGACCAGGAC		59	NA	
Drosophila melanogaster	50	CG5626	FBgn0036266	FBtr0076016	3	1	1	111	3L	12198561	12198639	TCCTACTAGAAGTTGGACGT		59	12198469	12198487	TAGTTGGTGTACCTTTCGC		59	NA	
Drosophila melanogaster	50	CG34050	FBgn0054050	FBtr0100105	2	1	1	61	3L	10938128	10938147	TACAATTTGCTTGATAGGCG		58	10938171	10938189	ACAGATAGCACGAGTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gap1	FBgn0004390	FBtr0076368,FBtr0076367	3	2	2	106	3L	9834655	9835578	ACTGCTTTAAGATTGTGCAC		59	9834568	9834589	GTTCATCAGACATATCTTGTGC		59	NA	
Drosophila melanogaster	50	syd	FBgn0024187	FBtr0076769,FBtr0076768	3	2	2	82	3L	7919927	7921025	TTCGCATAAACGATAACGAC		58	7919864	7919882	GTAACTCTTATCGCCTCGA		58	NA	
Drosophila melanogaster	50	CG10147	FBgn0035702	FBtr0076987	1	1	1	94	3L	6480892	6480970	AAGAAAGCTTTGGAAGAGC		58	6480816	6480834	TTCTTGTGCAGAATCAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5568	FBgn0035641	FBtr0077025	3	1	1	105	3L	5865429	5865498	TTTCTACCCGTGGATAGCT		59	5865565	5865585	TACTAGTCAAGCTAAACACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Uev1A	FBgn0035601	FBtr0077155,FBtr0077156	3	2	2	139	3L	5357292	5358043	AACACCATTCGAGAATCGA		58	5357103	5357189	ATCTATGATCAACCACGCC		59	NA	
Drosophila melanogaster	50	Aats-leu	FBgn0027085	FBtr0073348	1	1	1	85	3L	4827824	4827844	CAACGAGACTGATCATATTGG		58	4827949	4827967	CCAATTAAGGATGCCAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ack	FBgn0028484	FBtr0073211	3	1	1	167	3L	4111632	4111716	GCTCTCAAAGAATATTTGGC		57	4111846	4111864	TATATCGAATGTTCGCTGG		57	NA	
Drosophila melanogaster	50	CG16758	FBgn0035348	FBtr0072966,FBtr0072964,FBtr0072963,FBtr0072965	3	4	4	170	3L	2499617	2499702	AACCACGATGAGGTTATGG		59	2499465	2499483	GTCTTAGATGCGAGCTCAG		59	NA	InUTR
Drosophila melanogaster	50	drpr	FBgn0027594	FBtr0072799	2	1	2	80	3L	1716843	1716861	CGAATCCCTCAAAGAGGAG		59	1716541	1716799	AGGTGATCGTATTCATCGG		58	NA	
Drosophila melanogaster	50	CG13887	FBgn0035165	FBtr0072583	2	1	2	159	3L	838473	838491	TAAACTTGATCTGCACCCA		58	838614	839257	TTGTTGAGCTCGATGAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16940	FBgn0035111	FBtr0072486,FBtr0072485	2	2	3	85	3L	213966	214040	ATTATCTCTTGCGGATGGTG		59	214088	214106	ATATCACGACCACGTTGTC		59	NA	
Drosophila melanogaster	50	Gyk	FBgn0025592	FBtr0072530	3	1	2	81	3L	205419	205438	TAGTGAATACGGTCAACGAG		59	203609	205378	GTGATTATTTCCTCAACCTTCC		59	NA	
Drosophila melanogaster	50	usnp	FBgn0034913	FBtr0072236	1	1	1	61	2R	19731730	19731748	ATCAGTTGGACGAGATCAG		58	19731687	19731705	CTTCAGACCAGTCAGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fd59A	FBgn0004896	FBtr0071898	1	1	1	79	2R	18756377	18756716	GCTTTCCATACTACAAGGAC		57	18756758	18756776	TATGAAGCAGTCGTTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wrapper	FBgn0025878	FBtr0071821	1	1	1	100	2R	18269324	18269342	CTCAAGTTCCGACAGATCC		59	18269406	18269488	TAGATGAGTCCGTTTGTGG		58	NA	
Drosophila melanogaster	50	wdp	FBgn0034718	FBtr0071849,FBtr0071852,FBtr0071851,FBtr0071850	2	4	4	60	2R	18187362	18187380	CGACATAGATAGCGATGGT		58	18187320	18187338	CTCTGGATTCTCAAGAGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr58b	FBgn0041238	FBtr0071732	3	1	1	60	2R	17866985	17867006	CTAAACTTGTACTTCATGGTGC		59	17866946	17866967	CTATGTTGTACTTCATGTAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or56a	FBgn0034473	FBtr0086344	2	1	1	85	2R	15657949	15657967	ACACCTTTATCACTTGCCT		58	15657818	15657901	TCGGGTAATATCCATCTCCT		59	NA	
Drosophila melanogaster	50	CG30122	FBgn0050122	FBtr0086660	2	1	1	107	2R	14523768	14523855	CAAAGATGACAATCGATGGC		59	14523680	14523698	TGGCAATATCTTCCAGAGC		59	NA	
Drosophila melanogaster	50	Mapmodulin	FBgn0034282	FBtr0086822,FBtr0113091,FBtr0086823	1	3	3	81	2R	13755981	13756002	TACTCAAGTGGATAATTACCGC		59	13755859	13755939	GTCGTTGCAATCAAATCCA		59	NA	
Drosophila melanogaster	50	CG6385	FBgn0034276	FBtr0089560	3	1	1	97	2R	13642027	13642110	AAACTGTCTACACCTGTGC		59	13641948	13641966	GGGATTGTAGACCTCTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4966	FBgn0034261	FBtr0086840,FBtr0086839	2	2	2	83	2R	13577313	13577390	ATCTTGAGATCCAACGACTC		59	13577436	13577454	GATCTGATGGGTAGGTTCC		58	NA	
Drosophila melanogaster	50	mbl	FBgn0053197	FBtr0086994	2	1	4	130	2R	13249486	13249504	AATTCTCTGGCATGGTACC		59	13249598	13260595	AGGGTGTCCAGTAAATGAG		58	NA	
Drosophila melanogaster	50	CG34365	FBgn0085394	FBtr0112588,FBtr0112589,FBtr0112590,FBtr0112587	1	4	4	80	2R	11344304	11350806	TGATATCGAGGAAGAAACGTC		59	11350848	11350866	CTCTTGAGGAGCATCAGTG		59	NA	
Drosophila melanogaster	50	CG34187	FBgn0085216	FBtr0112380	3	1	1	84	2R	11181049	11182512	CAGACCATCATCAACTATTCC		58	11180985	11181006	CATGGTTCGATGTGAATTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33506	FBgn0053506	FBtr0091446	3	1	1	94	2R	10745458	10745476	TATGGTTTACACCATGGGT		58	10745320	10745338	GACCCAGAATGCTGTAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rpn6	FBgn0028689	FBtr0087474,FBtr0087475	2	2	2	129	2R	10638752	10638770	CTTTGAAGGATTCGACAGC		58	10638492	10638659	GGTAATAGCCAGCTTTCCA		59	NA	
Drosophila melanogaster	50	CG6701	FBgn0033889	FBtr0087607	3	1	1	83	2R	9864799	9864888	AAGAAATATCCAACGCCCA		59	9864734	9864754	GAAGGTCTTTAAGGTGAATCC		58	NA	
Drosophila melanogaster	50	CG13162	FBgn0033718	FBtr0087904	3	1	1	96	2R	8236024	8236101	TGATGAGCTACTCTCAGCA		59	8236160	8236179	ATTATGTACAAGCAGTCCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13162	FBgn0033718	FBtr0087904	1	1	1	60	2R	8236020	8236099	CAGTTGATGAGCTACTCTCAG		59	8236119	8236139	GAGTTGAGGTACGTAAATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7741	FBgn0033615	FBtr0088118	3	1	1	108	2R	7191260	7191336	TAAGCATATCACTGTTCCCA		58	7191406	7191425	AAGATACGTAAGATTGGTGC		57	NA	
Drosophila melanogaster	50	mthl13	FBgn0050018	FBtr0088220	1	1	1	88	2R	6679692	6679713	CGTATTCTGCCTATTTCTTGAC		59	6679760	6679860	TGATATAACCTGTCAGTGAGC		59	NA	
Drosophila melanogaster	50	eve	FBgn0000606	FBtr0088390	1	1	1	132	2R	5867056	5867145	ATGAATGCCTATCCAGTCC		58	5867241	5867259	TAGAACTCCTTCTCCAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alc	FBgn0033383	FBtr0088624,FBtr0088625	1	2	2	78	2R	5023198	5023275	CTATCGTGTGAACCCACTC		59	5023138	5023156	CATCCTTGATAGACAGGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11191	FBgn0033249	FBtr0088868	3	1	1	283	2R	3889251	3889441	AGTCCTGTCTGAAGTTCCT		59	3888986	3889004	CATCATGTATTTGGTGCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sep5	FBgn0026361	FBtr0088876,FBtr0088877	1	2	2	60	2R	3848536	3848556	GGTTTAAGGAACGCATAATGG		59	3848496	3848515	GGAAACTGGTATATGCTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scra	FBgn0004243	FBtr0100216,FBtr0088911,FBtr0088912	1	3	3	151	2R	3479240	3479258	AACCAGAAGGATCCTTGTG		59	3479372	3479455	GCAGCTAAATGTTGTTTCAC		58	NA	Nonspecific
Drosophila melanogaster	50	vimar	FBgn0022960	FBtr0086183,FBtr0086182	2	2	2	158	2R	2865096	2865204	TACTGGTGATGACTCAATGC		59	2864957	2864975	TGCTCCACAAAGTAGATGC		59	NA	
Drosophila melanogaster	50	Opbp	FBgn0050443	FBtr0086109	2	1	1	82	2R	2542551	2542569	TAAACGCTGTGGTAAACGA		59	2542613	2542694	GAAGTTATCCACGTCAAACAC		59	NA	
Drosophila melanogaster	50	Cyp6w1	FBgn0033065	FBtr0085987	3	1	1	79	2R	2061673	2061812	GAAGATTGGAAAGAACTTGC		57	2061854	2061872	GGGAGCATAGATCCTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7843	FBgn0033062	FBtr0086021,FBtr0086020,FBtr0086018	1	3	3	166	2R	1969443	1969461	CTCTAAGCGTCCAGAATCG		59	1968904	1969243	GTTCCAAAGGCAATTCTCTG		59	NA	
Drosophila melanogaster	50	PNGase	FBgn0033050	FBtr0085971,FBtr0085972	1	2	2	166	2R	1905650	1905668	AAGAAGTACAGAGATGCGC		59	1905853	1905933	TTATTGGTGCGCAATACAC		58	NA	
Drosophila melanogaster	50	RpL38	FBgn0040007	FBtr0111120	2	1	1	87	2R	403694	403712	GTTCGAGGTTCCTTTACAC		58	403625	403643	TTTACTTGTAGTCCAGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17493	FBgn0040010	FBtr0111255	1	1	1	60	2L	22443162	22443182	CCTCACTCGTATAGTCTATGC		59	22443203	22443281	GGGTAATTTCAGATGTTGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10949	FBgn0032858	FBtr0081367	1	1	1	76	2L	20416089	20416164	GAGGAACTTTGCTACAACC		58	20416031	20416049	TGGTTGATCTGATGACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10186	FBgn0032797	FBtr0081280,FBtr0081281	1	2	2	80	2L	19511020	19511039	TAGTTTCTACAACGACCTGG		59	19510897	19510980	TCCATACATCTCGATATGATGG		59	NA	
Drosophila melanogaster	50	dnt	FBgn0024245	FBtr0081224	1	1	1	106	2L	19339845	19339863	AAATTGTGATGATGGCCTC		58	19339639	19339775	CTGATCGTCAATAACGCAG		58	NA	
Drosophila melanogaster	50	ham	FBgn0045852	FBtr0081123	3	1	1	87	2L	18776363	18776479	CTGGTTATCTGTGGTACGAG		59	18776295	18776313	AGTTGAACAGGACTCTTGG		59	NA	
Drosophila melanogaster	50	CG31851	FBgn0051851	FBtr0080454	1	1	1	60	2L	13257902	13257920	ATGACCTGGAATCATGGAC		59	13257942	13257962	CCAGTTTACGATAATCCTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16965	FBgn0032387	FBtr0080284	2	1	1	233	2L	11983090	11983163	TAAGGGAGCTAGATTTCCC		57	11983360	11983378	TTGGTGGAATCATCACAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33695	FBgn0052831	FBtr0091681,FBtr0091682,FBtr0091679,FBtr0091683,FBtr0091680	1	5	5	81	2L	11278902	11278920	AGTATTCAAGTCACAGCCA		58	11278965	11278983	ATTAGACTGTGGATGCAGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17768	FBgn0032240	FBtr0100253	1	1	1	77	2L	10403555	10403747	GTTATTTGCACCTCAAAGGA		58	10403497	10403515	ATATTTGATGGTGCTCCCG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Trp1	FBgn0011584	FBtr0079932,FBtr0079931	1	2	2	80	2L	10011481	10011499	TTGCACTTCTGGATCTTCC		59	10011540	10011615	ATAGTTGCTCTCATATAGTGGC		59	NA	
Drosophila melanogaster	50	CG13130	FBgn0040965	FBtr0079974	1	1	1	75	2L	9983868	9983886	TCATTAGATGAGTTGGGCA		58	9983811	9983829	GTCCTGGGATCGAAATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13390	FBgn0032031	FBtr0079723	3	1	1	60	2L	8375870	8375888	GGCATACAGTTCCTAAAGC		58	8375828	8375846	TGGCATCTAACACGAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7795	FBgn0032019	FBtr0079611,FBtr0079610	2	2	2	82	2L	8317757	8317849	CACTCGCAACTATCATTGC		59	8317693	8317714	TGTGATGGTATGAGGAATTCTC		59	NA	
Drosophila melanogaster	50	CG7806	FBgn0032018	FBtr0079600	3	1	1	182	2L	8316116	8316202	TCTCTTTGAAGGCACTGTG		59	8316347	8316366	CAAAGAAGTTGCCTTTGACC		59	NA	
Drosophila melanogaster	50	CG14537	FBgn0031954	FBtr0079526	3	1	1	60	2L	7840742	7840761	GAGGGATATAACCAGTGGAG		58	7840784	7840802	GAAATCCATATTGGCCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15818	FBgn0031910	FBtr0079442	1	1	1	60	2L	7411296	7411315	ACTAAAGGATATCGAAGGCA		58	7411336	7411356	CTTCTGTCCATCTTTCAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sip2	FBgn0031878	FBtr0079360,FBtr0079357,FBtr0079361,FBtr0079359,FBtr0079358	3	5	5	64	2L	6961828	6961910	TTCCGAAATCAAGCATGTG		58	6961782	6961800	GAATTTGAGGTACCTTCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9550	FBgn0031826	FBtr0079286	2	1	1	204	2L	6497722	6497805	GACCTAAATCTGAACATCATGC		59	6498023	6498042	GGAACAAGTCCTCATAACGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15418	FBgn0031554	FBtr0077556	2	1	1	218	2L	3621584	3621602	ATTGGAGTACGAAAGTGCA		59	3621320	3621403	GCAGGCTATTATCTGTTCGA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Thor	FBgn0022073	FBtr0077524	2	1	1	165	2L	3478760	3479203	GGCACCAAACTTATCTACGA		59	3479331	3479349	ACTTGGTCTGCTTGATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3238	FBgn0031540	FBtr0077569	2	1	1	282	2L	3469212	3469230	TATTCTTCACCGGTTCAGC		59	3468896	3468966	TTCTCAAAGAACTGTCCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15408	FBgn0031523	FBtr0077587	3	1	1	170	2L	3333260	3333279	GCTGTTAATTGCCATACCAC		59	3333471	3333654	AAGGTTCCTCTGATGTTGG		59	NA	
Drosophila melanogaster	50	CG15406	FBgn0031517	FBtr0077580	1	1	1	101	2L	3310963	3311036	AATGTCCGATTTCCTCACC		59	3311101	3311119	TAGTTGTTGAAGGCGAAGG		59	NA	
Drosophila melanogaster	50	CG17258	FBgn0031496	FBtr0077668	2	1	1	221	2L	3033081	3033101	AGAATGGAGGTCCTTAAAGAG		58	3032820	3032898	GTTCTTTGTGATCAACCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31933	FBgn0051933	FBtr0077896	3	1	1	60	2L	1821981	1821999	TATGATAGAGGACAGCCAG		57	1821939	1821959	CTTTAATCTCATCCACTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10869	FBgn0031347	FBtr0113010,FBtr0077917	2	2	2	167	2L	1586997	1587018	TAAGGAACTCATAGATGTTGCC		59	1586788	1586869	AGTAAACTGCTTTGCAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31928	FBgn0051928	FBtr0077929	1	1	1	60	2L	1492785	1492805	GAAATTCTGACAGGAATCCTC		58	1492826	1492845	TCTTAATGACCAGATCTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14341	FBgn0031315	FBtr0077963	2	1	2	66	2L	1166938	1166956	TTACAATTGCGAGACATGC		58	1166986	1167004	TAGTGGACATCGCTTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13690	FBgn0031252	FBtr0078090	3	1	1	60	2L	418603	418622	GAAATAATTCGCGAGGAGTG		59	418562	418580	ACTCCATGACACTTTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11911	FBgn0031249	FBtr0078098	2	1	1	60	2L	320443	320462	TCCATTTACACCAAGGTGTC		59	320402	320422	AGTAGGCACTCTGAATATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17075	FBgn0031239	FBtr0078142	1	1	1	60	2L	265486	265505	TCCACCTATGCTTCTTTCAC		59	265445	265466	ATGTATTCATAGGTGGTCAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41474	FBgn0084034	FBtr0111203	3	1	1	105	X	22150773	22151456	CAATACATTGGTATTGTGCCTG		59	22151522	22151540	CATTTATCGCCGGATTTCC		59	NA	
Drosophila melanogaster	50	CG5445	FBgn0030838	FBtr0074428,FBtr0074425,FBtr0074427,FBtr0074426	1	4	4	130	X	17198383	17198401	CAAATGGCTGGTACTTTGG		59	17198821	17198840	GATTTGCGGATAGATATCCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	disco-r	FBgn0042650	FBtr0074251	1	1	1	60	X	16014329	16014348	ACAACGAGGAAGATGAACAG		59	16014288	16014306	GCCCGTGATAGATCTAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gbeta13F	FBgn0001105	FBtr0074109,FBtr0074106,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107	2	6	6	60	X	15755481	15755499	GCTCATTATCCGACTAAGC		57	15755523	15755614	CTCTTGTTAGATGGTGGCT		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG32626	FBgn0052626	FBtr0073830,FBtr0073833,FBtr0073832,FBtr0073831	3	4	4	81	X	13726180	13726259	GATCATAAAGGAAGTGGCCT		59	13726118	13726136	CGACTTGCCATAGATGGAG		59	NA	
Drosophila melanogaster	50	hep	FBgn0010303	FBtr0073749,FBtr0073747	2	2	3	238	X	12975691	12975709	GTCTAGATCACCGGAACAG		59	12975077	12975095	CTGTGGAATTCAATTGGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0073589,FBtr0073588	3	2	10	127	X	11856268	11856287	GAAGATCATTGGATTCGGTG		58	11848305	11854113	TTGAGTTCGAATCATCGTG		57	NA	
Drosophila melanogaster	50	Hsp60	FBgn0015245	FBtr0073434,FBtr0073435	1	2	2	189	X	11005433	11005514	AACGAGGATCAGAAACTCG		59	11005667	11005685	GATCGATGATGCCCTTCTC		59	NA	
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475	1	6	7	168	X	10173217	10217609	AGGTCAAAGAGATGATGGA		57	10173067	10173085	AGTCCCATAATGTACAGGG		58	NA	
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475	2	6	7	169	X	10173217	10217610	AAGGTCAAAGAGATGATGGA		58	10173067	10173085	AGTCCCATAATGTACAGGG		58	NA	
Drosophila melanogaster	50	CG32704	FBgn0052704	FBtr0071333	1	1	1	80	X	9128779	9128867	GTGGATTTACGATGCAACG		59	9128717	9128735	GATAACCTGGACTCACCTG		59	NA	
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	3	8	8	60	X	6579593	6579674	GCCTTCAATGTGACTTCTC		58	6579697	6579716	GTGGATAACTGTCCACAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Rnp4F	FBgn0014024	FBtr0070752,FBtr0112876,FBtr0112875,FBtr0070753	3	4	4	80	X	5214529	5214601	CAAATAATGGGCTATCCGG		58	5214467	5214485	ACCATTGTATTCGCTTTCC		58	NA	
Drosophila melanogaster	50	norpA	FBgn0004625	FBtr0070651,FBtr0070650	2	2	4	186	X	4248573	4251080	CTGATGAAGCATTGGATGC		59	4251230	4251248	ACTTGTCGAAGGTGAACTG		59	NA	
Drosophila melanogaster	50	crm	FBgn0000376	FBtr0070495,FBtr0070496	2	2	2	80	X	2629131	2629221	AGGGATATACTGGATCCGT		58	2629069	2629087	GATTTCCTGGAACTTGTGC		59	NA	
Drosophila melanogaster	50	deltaCOP	FBgn0028969	FBtr0070371	1	1	1	162	X	1755125	1755200	TTCTCGAAAGTGATTCCCG		59	1754981	1754999	CATGTGAGTCCATCTCCAC		59	NA	
Drosophila melanogaster	50	TRAM	FBgn0040340	FBtr0070168,FBtr0070167,FBtr0070169	3	3	3	61	X	830596	830614	CATATGGCAAGCCATACAC		58	830639	830657	GTAGAAGAATATCGCGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18166	FBgn0029526	FBtr0070095	1	1	2	116	X	375353	375371	TAGGTTCTGTGATCAAGCA		58	375192	375273	CGATAGTTCAACGAGTGAC		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0089226,FBtr0089223,FBtr0089225,FBtr0089224	2	4	5	118	4	1036234	1037009	AGATTTAGAGTGGAGAACAGG		58	1036136	1036154	CCGGAACATTATAGTGCTG		57	NA	
Drosophila melanogaster	50	CG11574	FBgn0039878	FBtr0085854	1	1	1	63	3R	27625940	27625958	TGAATGGACTAATTCCGGA		57	27625895	27625913	TACATGGATGACGATGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ttk	FBgn0003870	FBtr0085828,FBtr0085826,FBtr0085827,FBtr0085825,FBtr0085830,FBtr0085829	3	6	6	128	3R	27553857	27553875	AACATGATGAACGACTCCT		58	27553964	27554122	GCGACTTTCATTTAGATCATCC		59	NA	
Drosophila melanogaster	50	ball	FBgn0027889	FBtr0085095,FBtr0085096	2	2	2	60	3R	22691160	22691178	CAAACAACGGAGATCTCGA		59	22691118	22691139	CTTAGATTATTGTTGCTGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11892	FBgn0039313	FBtr0089645	3	1	2	139	3R	21108534	21108619	GAAGAAATTCTACGCTGCC		58	21108721	21108740	GATTCCTATAGCAGGCATCC		59	NA	
Drosophila melanogaster	50	CG13623	FBgn0039205	FBtr0084679	1	1	1	60	3R	20355671	20355689	GTGATCGATACAGTCTCGC		59	20355629	20355647	GTTCGCTATGGTAGTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sav	FBgn0053193	FBtr0084356	1	1	1	125	3R	18884837	18884855	TTCAACATGTTTAGCCTGC		58	18884657	18884675	CTTCTCGAGTATCAAAGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31203	FBgn0051203	FBtr0083926,FBtr0083924,FBtr0083923,FBtr0083925,FBtr0083927	3	5	5	87	3R	16575021	16575039	GATGGAATTACGGAAAGCC		58	16575089	16575200	GGAACATAACCCTAAACACG		58	NA	
Drosophila melanogaster	50	CG15025	FBgn0038709	FBtr0083768	1	1	1	60	3R	15316617	15316635	GCACAACTCGCTAAATGAC		59	15316575	15316596	CCTCAAGAGAACAGATAGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eh	FBgn0000564	FBtr0083444	2	1	1	86	3R	13272987	13273082	AAGAGATTTGACTCCATGGG		59	13272719	13272737	GTAATCTCCCAGCATGGTC		59	NA	
Drosophila melanogaster	50	Zeelin1	FBgn0038294	FBtr0083030	1	1	5	99	3R	11002129	11004014	TACAGCCGAACAAAGAAGG		59	11001978	11001996	GCTTGTCCCTCAAGTAGAG		59	NA	
Drosophila melanogaster	50	PGRP-LB	FBgn0037906	FBtr0082398,FBtr0082396,FBtr0082397	2	3	3	190	3R	7279014	7279184	AGATTGGAGAACCGAACTG		59	7278842	7278860	TTATGTGGGTAAAGTGCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6744	FBgn0037901	FBtr0082402	1	1	1	114	3R	7259978	7259996	ACATCTCGGATCTAAGGGT		59	7259675	7259900	GATTGGACTCGTTTGAGCT		59	NA	
Drosophila melanogaster	50	CG12419	FBgn0037769	FBtr0082148	2	1	1	107	3R	5807764	5807783	ATGAATTACTACGTGGAGCG		59	5807853	5807871	CATCACTGAATCCTCGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tgo	FBgn0015014	FBtr0082005	3	1	1	60	3R	4844947	4844965	AGCAATTATCAACCCAGGA		58	4844905	4844924	GTTCCCGACTTTAGATCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31473	FBgn0051473	FBtr0081749	1	1	1	79	3R	3638304	3638322	GTGTCTTGAAATGCCAAGG		59	3638578	3638598	CATCACACGAATCATAAACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf1	FBgn0010355	FBtr0081686,FBtr0081684	2	2	3	157	3R	2480377	2480939	CAGATGGCAGATGAATCCA		59	2481058	2481078	TTGTAAGGCCCATTATCATCC		59	NA	
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078674	2	1	5	86	3R	1587421	1587439	TTCATTAGCTGGAAGAGCG		59	1586678	1587373	GATTTGCTCCATAACATGTCC		59	NA	
Drosophila melanogaster	50	Grip163	FBgn0026432	FBtr0076061	3	1	1	147	3L	11990023	11990042	GACTATCTAAGCACCACTCG		59	11989834	11989916	CAGTGTTCAGGTTTAATCTTGG		59	NA	
Drosophila melanogaster	50	Ard1	FBgn0036064	FBtr0076349,FBtr0076352,FBtr0076351,FBtr0076350,FBtr0076348	3	5	5	67	3L	9966736	9966754	CTGAACCTCTACACCAACG		59	9966785	9966803	CCATCGGCATAGTACTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713	3	5	8	188	3L	5692112	5697030	GTTCCTTCGCAAGATTTCG		59	5698070	5698091	CGTAGTAACCATTTCTTTACCG		59	NA	
Drosophila melanogaster	50	Sk2	FBgn0052484	FBtr0072984	3	1	1	62	3L	3049408	3049426	CTACCTGATCCTCATACGC		59	3049451	3049470	ATGTTGTAGAGGAAGCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9153	FBgn0035207	FBtr0072670	3	1	2	85	3L	1314021	1314039	CAAAGAGCTCTATTGCTGG		58	1314088	1314173	GACTAGGTGTGAGGATCTG		58	NA	
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	1	8	8	80	2R	19817553	19817571	GGATATCATGGAGAAGCCC		59	19817427	19817509	CCAATAGCCATGTAACGGA		59	NA	
Drosophila melanogaster	50	inaD	FBgn0001263	FBtr0071909	3	1	1	90	2R	18745186	18745204	AAGCATAGTAACTACGCCG		59	18745060	18745133	CTCGATCGATCTCATAACCC		59	NA	
Drosophila melanogaster	50	mei-S332	FBgn0002715	FBtr0071761	1	1	1	72	2R	18010945	18010963	CCACTAGGATACCAGAGGA		59	18011060	18011078	AACACTAATTCCGCTGGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13492	FBgn0034662	FBtr0071741	1	1	2	80	2R	17709905	17709989	TGCAATCGTGAGATCTTCC		59	17709843	17709861	ATCCGATTCACAACTGGAG		59	NA	
Drosophila melanogaster	50	CG30393	FBgn0050393	FBtr0071620	2	1	1	60	2R	17154143	17154161	AGATGTCTGGCATAAGCAC		59	17154101	17154119	CTCTTCAGTTCCCTTTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10822	FBgn0034478	FBtr0086339	3	1	1	82	2R	15839178	15839197	TATATGACAATTTGCGGGAG		57	15839242	15839260	ACGAACTCTCAGTAGAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14495	FBgn0034293	FBtr0086810	2	1	1	60	2R	13937034	13937052	GATGAGTTCACCATTGCCT		59	13936992	13937010	ACAGATCGTAGGAATCGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10200	FBgn0033968	FBtr0087445,FBtr0087444	1	2	2	70	2R	10696983	10697001	ATTCTGGCTCCTCTTACAC		58	10697097	10697115	GAAACGCTCATCAAAGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8878	FBgn0027504	FBtr0088018,FBtr0088017	3	2	2	92	2R	8034900	8034918	CGATGAAGAGGAGAACCAG		59	8034688	8034844	CTATCCGATTCATCCTCGC		59	NA	
Drosophila melanogaster	50	Syx6	FBgn0037084	FBtr0088104,FBtr0088103	2	2	3	129	2R	7108119	7108443	CACTATCAGCATCGTTGAG		57	7108536	7108554	GTTCAGGCTCATCTTATCC		57	NA	InUTR
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	2	9	9	91	2R	5738884	5738970	GAAGCCGTTAAGGAGATCC		59	5738811	5738829	ATATCGATGACAGTTCCGG		58	NA	
Drosophila melanogaster	50	Rya-r44F	FBgn0011286	FBtr0088637,FBtr0088639	1	2	4	110	2R	4758430	4758448	AAGAGAAAGTCTACGGTGG		58	4758521	4759736	TCAACGAGAAGCTAATTGTG		58	NA	
Drosophila melanogaster	50	Cyp6a13	FBgn0033304	FBtr0088690	3	1	1	60	2R	4459448	4459469	CAGTCGTAATTTCCTGATATCC		58	4459490	4459508	TTCAAGTCCTTCCATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0081214,FBtr0100449,FBtr0081211,FBtr0081213,FBtr0081212,FBtr0081210	3	6	6	60	2L	19404088	19404106	TACTTCGAGATGTTTGCCC		59	19404046	19404065	TGTAGTTCTCCATAATGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ntl	FBgn0031934	FBtr0079478,FBtr0079479	2	2	2	114	2L	7712415	7712488	AGGAATTAAGTCGGTTGGC		59	7712566	7712584	CTTTATGCCTTTCCAGGCT		59	NA	
Drosophila melanogaster	50	NTPase	FBgn0024947	FBtr0077680,FBtr0077683,FBtr0077681	1	3	4	143	2L	2882504	2882702	CTTTGTCTTTGGCTTCGTC		59	2882379	2882397	CGATTGAACTTGTAGGCCA		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100309	1	1	8	151	2L	119258	119276	TTACTGAATTGCGTTCCCA		59	119068	119144	TTCGTCAATCACTTCTAGCT		58	NA	InUTR
Drosophila melanogaster	50	galectin	FBgn0031213	FBtr0078101	1	1	1	107	2L	74976	74994	TAAGTTTCACGGTGACTGG		59	75124	75142	ACCGTGGATTAATGTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	shtd	FBgn0004391	FBtr0074078,FBtr0074077	3	2	2	80	X	15350326	15350404	CCTATACGATCACGTAACCA		58	15350265	15350283	CGACTCAAATAGGCATCGA		59	NA	
Drosophila melanogaster	50	CG2061	FBgn0027498	FBtr0073429,FBtr0073430,FBtr0073431	3	3	3	60	X	10987595	10987614	ATTGGCTAAACGATGTACTG		57	10987635	10987655	CATATGGATACCAGGTCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32676	FBgn0052676	FBtr0071503	1	1	1	74	X	10611415	10620959	GTTTATTGGCTCAACGTCC		59	10611359	10611377	AATCATTAACCTGTGCGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG4586	FBgn0029924	FBtr0071003	2	1	1	60	X	6865441	6865460	TCGATAGCATCTATGGTCTG		58	6865483	6865501	AGTACTGTGTACTCTCCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14531	FBgn0040619	FBtr0085312	1	1	1	83	3R	24632860	24632878	CTCTATGAGCCATGGACAG		59	24632925	24632996	ATCCAGAATGAGCTTCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5053	FBgn0039352	FBtr0084898	3	1	1	96	3R	21489960	21490039	CAGACCAATAGGCAAACTG		58	21490099	21490117	TTGAAGTGTCAGTGTTGTG		58	NA	
Drosophila melanogaster	50	CG12250	FBgn0039345	FBtr0084895	2	1	2	101	3R	21434507	21434594	GTTAAGAAAGAATCTGGTACCG		58	21419450	21419468	GAAATCGCAATAATGGGCA		58	NA	
Drosophila melanogaster	50	CG11891	FBgn0039309	FBtr0100223	1	1	3	63	3R	21097769	21097836	CTATGTGGAATTTGCCGAC		58	21097863	21097881	GTTGTACACTCCGTAGCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5768	FBgn0039198	FBtr0110867,FBtr0084620	3	2	2	114	3R	20212175	20212193	GCTATAATGGACGTGACTG		57	20212017	20212097	TTTGGCAAGCTGAATATGG		58	NA	
Drosophila melanogaster	50	Tango12	FBgn0051052	FBtr0084367	3	1	1	100	3R	18812460	18812536	CTGTTCCTCAGGGAAATGG		59	18812378	18812396	AACCGGAGTATCATGAACC		59	NA	
Drosophila melanogaster	50	CG6660	FBgn0039030	FBtr0084338	1	1	1	60	3R	18749535	18749553	TCGTATGCGTACTACATGC		59	18749577	18749657	GCAGCACTATGAATACCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5892	FBgn0038873	FBtr0084052	3	1	1	154	3R	17069448	17069525	TGTATACTTGGGCCAAGAC		58	17069696	17069717	GTACATCAGTGGAATATTCAGC		58	NA	
Drosophila melanogaster	50	CG31245	FBgn0051245	FBtr0083773	3	1	1	60	3R	15202568	15202588	CTATAACCAAAGATTGCAGGG		58	15202462	15202547	CTTCTCAACAATGGGTTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha100-2	FBgn0028670	FBtr0083656,FBtr0083657	2	2	2	94	3R	14217227	14217308	GTTCATGATGTTCTTCAAGTGG		59	14217154	14217172	TGAACATGATCAACACGGA		59	NA	
Drosophila melanogaster	50	Spt3	FBgn0037981	FBtr0082537	1	1	1	62	3R	7843126	7843144	AAAGTGGAAGCATACCGAC		59	7843168	7843188	CTACATTATGTCCAGCTAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf12	FBgn0011290	FBtr0082442,FBtr0082440,FBtr0082441	2	3	3	69	3R	7504709	7504728	ATATCTGGTGGTAGCAAGTC		58	7504588	7504677	TAAGCATGGGAGTGTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40400	FBgn0058400	FBtr0111160	1	1	1	60	3L	24524227	24524630	CGTTCACAGTATTATTCGGAC		58	24524187	24524206	GAACACATTCAGTTAGTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	D	FBgn0000411	FBtr0075746	3	1	1	60	3L	14169715	14169733	ATGGGTCAACAGAAGTTGG		59	14169673	14169691	GGAATGGATTGTAGCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10083	FBgn0036372	FBtr0075819	2	1	1	130	3L	13477335	13477417	GAATGCATTAACGGATTTGG		57	13477224	13477242	CTGGATCGAAAGTGATCTC		57	NA	
Drosophila melanogaster	50	Klp68D	FBgn0004381	FBtr0076030	3	1	1	60	3L	11789708	11789832	GAGCATAGTTCAAGATCCCA		59	11789855	11789873	TTTCCGTATCGCACATCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32046	FBgn0052046	FBtr0076409,FBtr0076408	2	2	2	258	3L	9741456	9741474	AACTCTACTTGGACTCGTC		58	9741159	9741235	GTCATTGAAGAGATTGTGCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13313	FBgn0035941	FBtr0076512	1	1	1	82	3L	8953047	8953130	TGCTGCATTTATCAAAGGAC		58	8953175	8953193	TATGGAGCGGGATAATTGC		59	NA	
Drosophila melanogaster	50	CG11345	FBgn0035546	FBtr0073334	2	1	1	217	3L	4458028	4458110	GAAAGTCCTTATGCTGGCT		59	4457829	4457847	AATAAACTGGAGGAGGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14997	FBgn0035515	FBtr0073226,FBtr0073225	2	2	2	84	3L	4241427	4241503	TTTAGGAAGATGGGTCGTC		58	4241551	4241569	CTGCGTAATGCTTAACACC		59	NA	
Drosophila melanogaster	50	YT521-B	FBgn0027616	FBtr0073079,FBtr0073078	2	2	2	142	3L	3373085	3373103	GAACAATAGCGACAACGTC		59	3372842	3372982	CAAATTTACCACTCTCGTTGAC		59	NA	
Drosophila melanogaster	50	CG3589	FBgn0035065	FBtr0072375	3	1	1	110	2R	20672168	20672186	ATTGTGGTCATAGAGTCGG		58	20672260	20672335	AGTCTCAATGTTCTGTCCC		58	NA	
Drosophila melanogaster	50	Pde8	FBgn0034886	FBtr0072074,FBtr0072077,FBtr0072078,FBtr0072075,FBtr0072076	3	5	5	65	2R	19565138	19565156	ACATATCACAACAGCACCC		59	19565246	19565264	TAGTTGGGTGATGAAAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15118	FBgn0034418	FBtr0086590,FBtr0086592,FBtr0086589,FBtr0113096,FBtr0086591	2	5	5	96	2R	15023520	15023538	TGATCAACGGCTACAACTG		59	15023284	15023461	TTCTTAATTTGCTCCTCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8214	FBgn0034037	FBtr0087320	1	1	1	259	2R	11575754	11575772	TAACACAGAGTTCGAGCAC		59	11575449	11575467	GATCCATGTCCAGGATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13165	FBgn0033707	FBtr0087892	2	1	1	93	2R	8184832	8185026	GGATGTTGTACAGGTACCTG		59	8185082	8185100	AGCAGATACATCTTGTCGC		59	NA	
Drosophila melanogaster	50	CG13170	FBgn0033703	FBtr0087996	2	1	1	69	2R	8127944	8127962	CTGTTTGTCCTGTCATTCG		58	8127994	8128013	ATAACTTGGGTGTGGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1776	FBgn0033441	FBtr0088497	3	1	1	82	2R	5608265	5608537	TAAGCGACTCAGAGTTCTC		58	5608201	5608222	CTGTTCCATACGATATACAGTC		57	NA	
Drosophila melanogaster	50	CG1294	FBgn0033030	FBtr0086035	3	1	1	66	2R	1552910	1552928	CAACGATCATATTCGTGCG		59	1552958	1552976	AGTACTTGTACATCCGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10428	FBgn0032724	FBtr0081132	2	1	1	171	2L	18949217	18949236	AATAGCTTTACGGAGTTCCC		59	18949370	18949444	TCTTGCAATAAGCTCTCGG		59	NA	
Drosophila melanogaster	50	CG4580	FBgn0032585	FBtr0080865	2	1	1	184	2L	16489425	16489444	AGTACTACCAAGACTTGCAG		59	16489591	16489662	CTGAAAGAATGGCTGAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fu12	FBgn0026718	FBtr0079703	2	1	2	100	2L	8450794	8450812	GAGACTATCGAAATGCGCT		59	8450647	8450666	CTTACGGACATTCTCCAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4495	FBgn0031893	FBtr0113028,FBtr0079405	2	2	2	98	2L	7183805	7183879	ATGATCCCAAGTCTGTTGG		59	7183939	7183959	AGTCTGAGAATGTGATCAGTC		59	NA	
Drosophila melanogaster	50	CG9175	FBgn0031779	FBtr0079212,FBtr0079211	1	2	2	95	2L	6097245	6097320	TCCCAAAGACGTACAATCC		59	6097168	6097186	TCAGATGCCAATGTAGGAG		58	NA	
Drosophila melanogaster	50	CG7382	FBgn0031708	FBtr0079130	3	1	1	76	2L	5519254	5519272	GATGCAGTTCTATGTGCAG		58	5519141	5519214	GTTTACCAGAGTCACTCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	l(2)05714	FBgn0010607	FBtr0079050	3	1	2	72	2L	4970769	4971092	CACCAGAATATGATTAAGGGTG		58	4970718	4970736	GTGAAATTATGGAGGCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tango14	FBgn0031312	FBtr0077961	3	1	1	109	2L	1159432	1159450	GGTTATGTGAACGGTTCAC		58	1159809	1159829	TTACTGTCTTCGTACAACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:U31:54Ed	FBgn0063378	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30211	FBgn0050211	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30231	FBgn0050231	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me18S-G642	FBgn0086035	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG40172	FBgn0058172	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CR41506	FBgn0085789	FBtr0114242	1	1	1	109	YHet	338145	338235	TGCTAAACTACAACTCACCC		59	338307	338325	GTAAGTCCTTCTCACGAGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG17167	FBgn0039941	FBtr0113729,FBtr0113728	3	2	2	127	XHet	57117	57598	CAAGCATCTTAACGACGAG		58	57689	57707	ATAGCGTGACCTTAATGGG		59	NA	
Drosophila melanogaster	50	CG17167	FBgn0039941	FBtr0113729,FBtr0113728	1	2	2	91	XHet	53879	56997	CATCGATAAGCCTCCAGAG		59	57049	57070	GAAGATTAAGAACAAAGAGGCC		59	NA	
Drosophila melanogaster	50	CG2893	FBgn0040030	FBtr0113766,FBtr0113767,FBtr0113768,FBtr0113769	1	4	4	102	XHet	12054	12367	GATAACGATAATCGGAGACAC		58	12431	12449	AATAACACTAGACACCGCT		58	NA	Nonspecific
Drosophila melanogaster	50	CR32661	FBgn0030356	FBtr0073593	1	1	1	70	X	11812357	11812375	TTCATTCACGAACAGAGTG		57	11812241	11812259	ATTAGTTTGGACATGTGGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG41105	FBgn0069939	FBtr0111201,FBtr0111200	3	2	2	83	X	22268296	22268315	AACAAGGACGTCAAATAGAG		57	22268361	22268379	GTTTGGTCTGGTGTTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41482	FBgn0084042	FBtr0111177	2	1	1	106	X	22083319	22092641	TTTAGGATACCCTACAGTACAC		58	22083234	22083253	CAACAATTGTACCAAAGGCA		59	NA	
Drosophila melanogaster	50	CG14584	FBgn0031181	FBtr0077213	2	1	1	60	X	21349676	21349694	TCAACTAGAGATCCTAGCC		57	21349634	21349652	GATAAGCAATCGAACCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077204,FBtr0077206	2	2	8	175	X	21247655	21247673	ATATGTTCCAGCGAGAAGC		59	21251117	21251692	CCAAAGGATCTTAGCCTCTC		59	NA	
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0112570,FBtr0112569	1	2	5	82	X	20663568	20663649	AGACTGTGTACATACAAGAGAC		59	20663507	20663525	CATCGACCACTGTATACGT		58	NA	
Drosophila melanogaster	50	Pp4-19C	FBgn0023177	FBtr0077324,FBtr0077325	3	2	2	144	X	20293018	20293100	CAATTACTGCTATCGCTGC		59	20292892	20292910	TTAGAGAAAGTAGTCCGCC		58	NA	
Drosophila melanogaster	50	Pp4-19C	FBgn0023177	FBtr0077324,FBtr0077325	3	2	2	144	X	20293018	20293100	CAATTACTGCTATCGCTGC		59	20292892	20292910	TTAGAGAAAGTAGTCCGCC		58	NA	
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089402	3	1	13	178	X	20101688	20103205	AGGATGAATTCACAGTGCT		58	20101528	20101548	TTCAGTCTCCTTCTTGATCTC		58	NA	
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089406,FBtr0089407	3	2	13	97	X	20105886	20105904	ACTGGTCTACACAAAGCAG		59	20104509	20105411	TAGCATGAGCTTTACGTGG		59	NA	
Drosophila melanogaster	50	CG34331	FBgn0085360	FBtr0112533	2	1	1	99	X	20016607	20016625	AATGTTCCCGATATTCCCG		59	20016688	20016706	TGATCGTGAATATGCCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14216	FBgn0031054	FBtr0074747	1	1	1	60	X	19559218	19559295	ATAAACATGATGGCCAAGTC		58	19559318	19559336	ACTCCTGGATCAATTCGTC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12204	FBgn0031022	FBtr0074783	2	1	1	77	X	19387626	19387644	TTTAAGGAGCACAAGGACC		59	19387567	19387585	ATGCTGGTACCAATCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8028	FBgn0031010	FBtr0113005	1	1	2	77	X	19173010	19173028	ATTTGAGCTGGGATACAGC		59	19171955	19171973	ATACGAGATGCCAAGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6361	FBgn0030925	FBtr0074630,FBtr0113000	3	2	2	256	X	18374512	18374587	ATGAATGTGACCAATCGTG		58	18374274	18374292	GAGATTACGCCTACGATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32559	FBgn0052559	FBtr0074458	2	1	1	68	X	17629586	17629605	ATCACATTACTGCCCAAGAG		59	17629636	17629654	TCTCGATGATGTCACATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	par-6	FBgn0026192	FBtr0074456,FBtr0074455	2	2	2	83	X	17598560	17598579	TAACAACGACGATAACTTCG		58	17598624	17598710	TTAAGATCATCCTTTCGCTG		57	NA	
Drosophila melanogaster	50	B-H2	FBgn0004854	FBtr0074429	1	1	1	195	X	17215117	17216701	AATCGCAGAACCAAATGGA		59	17216859	17216878	CCTGGCGGTAATAGATATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32563	FBgn0052563	FBtr0074391	2	1	1	60	X	17102868	17102888	TTACTATGTGGACACCTTGAC		59	17102909	17102928	TGGAATCGATGGAATCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9059	FBgn0030810	FBtr0074414,FBtr0074413	2	2	2	145	X	16870244	16870262	AATATGGCCGATCTTACCA		58	16869876	16870075	TATACGTGATGTCTGGAGC		58	NA	
Drosophila melanogaster	50	CG9699	FBgn0030772	FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369	1	6	7	76	X	16588098	16588116	CATTGAGGCGGTTAAATGC		59	16580767	16580785	TGTAATCGCGATCCTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	crl	FBgn0015374	FBtr0074283	3	1	1	109	X	16488187	16488205	AGGACAACTTCTTCGAGTG		59	16488361	16488379	ACTCAGAGGATAGTCGGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	caz	FBgn0011571	FBtr0074217	3	1	2	96	X	16186056	16186074	GGAGGACACCATCTTTGTC		59	16186132	16186236	CTTGTCTTTCTTGATGATGCC		59	NA	
Drosophila melanogaster	50	CG9216	FBgn0030726	FBtr0074252,FBtr0074253	2	2	3	161	X	15991598	15991746	GATGATCAATGTGCTCGAC		58	15991455	15991474	ATACTGTTCGGAGACATTGG		59	NA	
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	3	9	9	111	X	15788792	15788878	AGTTACCGAATATGGCGAG		59	15788952	15788971	TTTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	3	7	7	83	X	15717700	15717788	GATCCATTGCTTGAGACTG		58	15717832	15717853	TTCGTAGAGATCTTTAAGTCCC		59	NA	
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	3	7	7	83	X	15717700	15717788	GATCCATTGCTTGAGACTG		58	15717832	15717853	TTCGTAGAGATCTTTAAGTCCC		59	NA	
Drosophila melanogaster	50	mRpS30	FBgn0030692	FBtr0074094	3	1	1	60	X	15681959	15681978	CATGACAAGGAGTATGTTCC		57	15681998	15682019	ACCTGTTCTTATTCTTAGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15641	FBgn0030643	FBtr0074035	1	1	1	62	X	15362094	15362112	TCTGTACGTCTTCAATCGC		59	15362138	15362156	TAGCAATTACCGTTGACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9053	FBgn0030606	FBtr0073969,FBtr0073968	1	2	2	60	X	14960238	14960256	CCTACGACAAGGAGATGAC		59	14960196	14960214	GAGTGGTATAGGCACTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9009	FBgn0027601	FBtr0073972	1	1	1	75	X	14829955	14829973	GGATGACTTCATGAGGTCG		59	14829468	14829916	CATAAAGAGGGCAATTGGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13403	FBgn0030544	FBtr0073928	2	1	1	64	X	14085586	14085604	TCTGGTTATTACTCGGGTG		58	14085540	14085558	TAGTTCTTGTAGCTGGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr12A	FBgn0030494	FBtr0073784	1	1	1	60	X	13437904	13437925	TACTAGATCGATTCGATAACCG		59	13437945	13437964	TCCAACTCGAATCGATACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1640	FBgn0030478	FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769	1	6	6	82	X	13268114	13268132	ATTCAACCGTTAGACGTCC		59	13268315	13268333	ATGTTATCCAGTGTGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2111	FBgn0030223	FBtr0071492	1	1	1	61	X	10554376	10554449	CATACGCAATTATTGCAGC		57	10554474	10554492	CAATTAGCGGTGTCATCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1889	FBgn0030164	FBtr0071409	3	1	3	168	X	9859796	9859876	TCTCGATTGTAGCCTAGAC		57	9860008	9860026	GTTTCTGACCTTCTGATCG		57	NA	
Drosophila melanogaster	50	su(r)	FBgn0086450	FBtr0071338,FBtr0071337	3	2	2	236	X	9091509	9091527	TTTCTTTGGTCCCTACCAG		58	9091233	9091309	ATGCACATGTCATCATCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	rdgA	FBgn0085373	FBtr0112550,FBtr0112552	3	2	3	96	X	8917351	8918116	GTGGAAGAGCCCTATACTG		58	8918299	8918317	TCCTTGTTCATGTAGTGCA		58	NA	
Drosophila melanogaster	50	oc	FBgn0004102	FBtr0089650	1	1	2	184	X	8534548	8536499	GGCGATCTATGCTATCCAG		59	8527985	8534400	TTGAACCACACCTGTACTC		59	NA	
Drosophila melanogaster	50	CG12111	FBgn0030050	FBtr0071232	2	1	1	60	X	8464753	8464772	CCATCGGAGATTGATACCAC		59	8464712	8464733	GCTCGATGTAGTAATAGTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PIP82	FBgn0024943	FBtr0071235	3	1	1	112	X	8419964	8419982	TCCCAATCAGAATCCATCG		59	8419795	8419889	AGTAGCTATTCTCTTCGTCG		58	NA	
Drosophila melanogaster	50	org-1	FBgn0021767	FBtr0071244	1	1	1	85	X	8345442	8345460	ATTGGATGAAGCAGATCGT		59	8345278	8345396	GGAGTTCAGAATGATATGTCCA		59	NA	
Drosophila melanogaster	50	RpS6	FBgn0004922	FBtr0071137,FBtr0071135	1	2	3	268	X	7794950	7794968	TTCTACGAGAAGCGTATGG		58	7794187	7794205	TTCTTCAAGACGACCAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18624	FBgn0029971	FBtr0071140,FBtr0071141	3	2	2	126	X	7787312	7787330	GTCTTGGGACTGGATAAGC		59	7787204	7787222	CGTATAGGGCACTCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CheA7a	FBgn0029948	FBtr0071055	3	1	1	60	X	7272239	7272257	TTGGTTCATAGTTGTCGAG		57	7272280	7272299	CCATCGTAAAGGTGTTTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100214,FBtr0100208,FBtr0100200,FBtr0100215,FBtr0100217,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100201,FBtr0100206	3	11	15	113	X	6979981	6981658	CCATCCGGAATGGATACAG		59	6979886	6979904	TAAATTGTTGGCACTCCCA		59	NA	Nonspecific
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	3	12	15	240	X	6978842	6979199	CTTTGTTCGGTACAACAAGC		59	6978621	6978640	AATTGATCTACCTCTGTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	3	12	15	240	X	6978842	6979199	CTTTGTTCGGTACAACAAGC		59	6978621	6978640	AATTGATCTACCTCTGTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	pod1	FBgn0029903	FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966	3	5	6	107	X	6701674	6702856	CAATTATTCCACGTTTGGGT		58	6702926	6702944	AGATATTCTCGTGGGATCC		57	NA	
Drosophila melanogaster	50	RpL17	FBgn0029897	FBtr0070982	1	1	4	202	X	6638071	6638089	AATCAACACGTCGAATTGG		58	6636285	6637104	GTGTTCTTGAAGTGCACAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG17717	FBgn0029877	FBtr0070944,FBtr0070943	1	2	2	60	X	6484257	6484276	ACTAGCCCATATCATCTTGC		59	6484361	6484382	GCTGCCTTGATTCATATTATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33668	FBgn0053668	FBtr0091647	1	1	1	60	X	6313194	6313213	AAAGTTTGTAAGCGACACTC		58	6313153	6313173	GTTGCCATTAAGTAACTGCTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15764	FBgn0029817	FBtr0070820	3	1	1	61	X	5763282	5763300	CTATCGTCAATTTGGTGCA		58	5763325	5763343	TGTATAGCCATTCACGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3239	FBgn0029769	FBtr0070793,FBtr0070792	1	2	2	60	X	5388821	5388839	CCAACTATGGGCCATAGTC		59	5388779	5388797	ATCGCTCTTGGATATTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mcm3	FBgn0024332	FBtr0070762	2	1	1	183	X	5219595	5219613	CTATCGCAATCCCAAGGAG		59	5219834	5219852	CATGAACTCCACGGATAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ec	FBgn0000542	FBtr0112801,FBtr0070606,FBtr0112802	3	3	3	60	X	3746876	3746896	TAATCCAGGACAAGATTGGAG		59	3746918	3746936	TTATCCACACTCTGTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10793	FBgn0029656	FBtr0070536	3	1	1	60	X	3210169	3210189	AGAATGGATACTATGCGAGTG		59	3210129	3210147	TATTCGTCGGTTAGACGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2694	FBgn0024991	FBtr0070482,FBtr0070483,FBtr0070481	1	3	3	103	X	2609385	2609403	GAAACCGACATGAAGACAC		58	2609550	2609568	ATCTCGTTCAGATTCTGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	Csat	FBgn0024994	FBtr0070501	2	1	1	221	X	2597412	2597431	ATACGCTGAAGTACATCAGC		59	2596698	2596716	CAATGATGGTCTTGTGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	br	FBgn0000210	FBtr0070266	1	1	7	123	X	1531146	1531164	CCAATATCGATCCCTCAGC		59	1537128	1537146	AATGTGGAGAGGTTAAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0070176	3	1	5	152	X	935429	936303	ATTGACAGATACGATGTGC		57	936418	936437	ATTGTACAGAAACAGGTACC		57	NA	
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	2	8	8	61	X	551358	551376	GGATGATGAGAGCAAGGAG		59	551401	551419	TTAGGAAATCTGCATCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ewg	FBgn0005427	FBtr0100581,FBtr0100580	1	2	8	82	X	165638	167225	CAACAGCAATTACACCACG		59	165574	165594	GATTATTTGGGTCTACCTGGA		58	NA	
Drosophila melanogaster	50	G9a	FBgn0040372	FBtr0070063	3	1	1	81	X	146766	146785	CATCAGGACTACAGATTCCC		59	146826	147112	CGTAGTCAAAGCATATTTCCTC		59	NA	
Drosophila melanogaster	50	CR40642	FBgn0085761	FBtr0114211	1	1	1	60	U	9503526	9503545	TGAAGATTGAGATAGTCGGG		58	9503568	9503586	CAGAACGAGCACATAAACC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR41583	FBgn0085805	FBtr0114259	1	1	1	60	U	6962694	6962713	GACAAAGTGACTTAGTGCTG		58	6962653	6962673	CTAACAAGGACTTAGTAGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40196	FBgn0058196	FBtr0113830,FBtr0113829,FBtr0113831	1	3	3	119	U	1092306	1092324	AGATCTAAGTTGCGATCCT		57	1092152	1092224	TAAAGAGAATTCACTGCTCG		57	NA	
Drosophila melanogaster	50	CG40091	FBgn0058091	FBtr0113789	3	1	1	122	U	131203	131221	TTGAGACGTTCGGTAAAGG		59	125409	125427	CGCAATATTCCTTGAACGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33521	FBgn0053521	FBtr0091471,FBtr0091472	3	2	4	192	4	1207179	1207197	TTTCGGAAATGGATTACCC		57	1208238	1208378	CTTCTCAGGTATTGTAGATCG		57	NA	
Drosophila melanogaster	50	CG32016	FBgn0052016	FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232	1	6	6	82	4	974520	974659	GCACTACTCTCAAGAATTGC		58	974457	974475	GAGTTGGAGAGTTACCGTG		59	NA	
Drosophila melanogaster	50	CG1732	FBgn0039915	FBtr0089972	1	1	2	81	4	654475	654553	TGTATTACACAAGGTGGCA		58	654598	654616	ATATGAGCCACAGTAAGCA		58	NA	
Drosophila melanogaster	50	mav	FBgn0039914	FBtr0100502	2	1	2	281	4	645271	645398	GGTCAATATAAGCCAAGCTG		58	645009	645027	TTCATTGTATCCTGTTCGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	1	7	7	82	4	208987	209060	CGGATCATAGACTTACGGA		57	208923	208941	GAAGCATGGTTTAGTCAGG		58	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156	3	9	10	82	4	103361	106346	ATCCTAAGATGGGCTTAACTC		58	106387	106408	CATATCTGAACTTAGCATTGGG		58	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-1377e	FBgn0083047	FBtr0113594	2	1	1	71	3R	26032799	26032817	TCTGGACGTTGTTCAAGTC		59	26032746	26032764	AACATTGTGGAGTGATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ttk	FBgn0003870	FBtr0085828,FBtr0085826,FBtr0085827,FBtr0085825,FBtr0085830,FBtr0085829	1	6	6	126	3R	27553859	27553877	CATGATGAACGACTCCTCC		59	27553964	27554122	GCGACTTTCATTTAGATCATCC		59	NA	
Drosophila melanogaster	50	CG1607	FBgn0039844	FBtr0085786,FBtr0085785	1	2	2	82	3R	27214820	27214896	TACATATGCGAAACTGCTG		57	27214942	27214960	TAAAGTATTGCGTGTTGCC		58	NA	
Drosophila melanogaster	50	CG31005	FBgn0051005	FBtr0085769	2	1	1	90	3R	27066774	27066794	GCTGGTGATTACATCTTATCG		58	27064197	27066722	CGGTCAAGATCTGACTCAG		59	NA	
Drosophila melanogaster	50	CG15533	FBgn0039768	FBtr0085626	1	1	1	114	3R	26256515	26256608	TGATGAGAAAGTACTGGCG		59	26256686	26256704	GAATTGATGGTCACAGCAG		58	NA	
Drosophila melanogaster	50	sima	FBgn0015542	FBtr0114597	1	1	2	94	3R	25907961	25907979	TACTGCTGGATTCTTAGCC		58	25908036	25945862	GGAATCGTCATCCTTATGAC		57	NA	
Drosophila melanogaster	50	CG11504	FBgn0039733	FBtr0085548,FBtr0085547,FBtr0085549	1	3	3	60	3R	25824888	25824907	GATAGCTACTTTGAGGAGCA		58	25824930	25824948	CGTAGTACATGCGTTTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS8	FBgn0039713	FBtr0085489	3	1	1	217	3R	25688837	25688855	ATGAAGAAGTACCTGGAGC		58	25689254	25689272	CAAATCATGTCTTGCAAGC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG2006	FBgn0039664	FBtr0085425	2	1	1	145	3R	25316053	25316071	GATAACCTGGAGATCACCG		59	25316180	25316198	ATGAGATCGTACATGTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100335,FBtr0100339,FBtr0085093,FBtr0085092	3	4	9	103	3R	22699390	22699590	CTAGATTGGATGCTCTTTGG		58	22699306	22699326	TCCTGCTTAGTAACTCTAAGC		58	NA	InUTR
Drosophila melanogaster	50	MED28	FBgn0039337	FBtr0084836	1	1	1	69	3R	21303057	21303075	CAAGGACGAGAATCAGGAC		59	21303108	21303126	ATTGTAGTGCTTCTGCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6995	FBgn0039229	FBtr0084699,FBtr0084700	2	2	3	94	3R	20646482	20646831	CAGATGAAGATCATGGAGTCC		59	20646887	20646905	CGCTTACGATCAGTAACGT		59	NA	
Drosophila melanogaster	50	Syx18	FBgn0039212	FBtr0084670	2	1	1	60	3R	20450761	20450780	TGGAACAGATCTATCTGGAC		58	20450720	20450739	CTATAGGTTTCCAGTTCGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13624	FBgn0039209	FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795	1	6	6	107	3R	20386540	20386627	CATTAAGGTGTACAAGCACAG		59	20386453	20386471	CTTAGCTTGTCCAGTTCCT		58	NA	
Drosophila melanogaster	50	Acp95EF	FBgn0002863	FBtr0084561	2	1	1	61	3R	20054874	20054893	CAGATTTGAGACGAAAGACC		58	20054917	20054935	ATTAACCAGCGAGTGACTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10225	FBgn0039110	FBtr0084468	3	1	1	66	3R	19577600	19577618	GAAACGCAAATACGAGGAG		58	19577552	19577572	CACGTCGATAATGTTGATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16732	FBgn0039086	FBtr0084419	1	1	1	60	3R	19361166	19361184	TTTGGTAATATGCGTTGGG		58	19361124	19361145	GAGAGTTGATATCCATAACCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	orb	FBgn0004882	FBtr0100228,FBtr0084386,FBtr0084385,FBtr0084384,FBtr0100227	2	5	5	80	3R	19092488	19092506	TGATTCTCACTGTGGTAGG		58	19092371	19092446	CAAGGAATGACTTCAACATCC		59	NA	
Drosophila melanogaster	50	CG17119	FBgn0039045	FBtr0084357,FBtr0084358	1	2	2	102	3R	18881579	18881597	TACTCGAAATCAGTCGGTG		59	18881430	18881515	GAACACATCCTTCACAATCTC		58	NA	
Drosophila melanogaster	50	CG34149	FBgn0083985	FBtr0111020,FBtr0113489	2	2	2	64	3R	18206399	18206417	GATCAAAGCCTCTGTTCTG		58	18206442	18206463	TCTGATAAGAACTCCTGTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067	3	1	22	81	3R	17200835	17200853	AACAGTCCCAGAACTACAG		58	17181270	17200790	TCACCTAAATCTTGAGCCT		57	NA	
Drosophila melanogaster	50	CG5191	FBgn0038803	FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905	1	5	5	88	3R	16396363	16396821	TGTCGACAGGTAAATCCTC		58	16396873	16396891	ATCACGTTGTCTATCTCCC		58	NA	
Drosophila melanogaster	50	CG4342	FBgn0038791	FBtr0083898	1	1	1	60	3R	16207789	16207902	CATCGATAATCAGACGCAG		58	16207747	16207765	GATGATGTTCTCCTCGGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4686	FBgn0038739	FBtr0083816	1	1	1	238	3R	15690793	15690811	GATCACTCTATCGACTGGC		59	15691013	15692147	CAAAGTGCCAGTGAATACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4662	FBgn0038735	FBtr0083813,FBtr0083814	3	2	2	111	3R	15676840	15677559	AACCAAGCGAATTATGGAG		57	15677633	15677756	GTTTACATAGTTCTCCAGGG		57	NA	
Drosophila melanogaster	50	CG11407	FBgn0038733	FBtr0083790	1	1	1	81	3R	15607737	15607808	TCCAGTCATTCCTTAACCAC		59	15607852	15607870	TTACAGTGGTAAGCAGACC		58	NA	
Drosophila melanogaster	50	CG16718	FBgn0038721	FBtr0083805,FBtr0083806	2	2	2	80	3R	15461808	15461826	AAAGTCATTGATTCGCCCA		59	15461689	15461765	TCGAAAGTCCGTATATCTGC		59	NA	
Drosophila melanogaster	50	CG6231	FBgn0038720	FBtr0083810,FBtr0083809,FBtr0083807,FBtr0083808	1	4	4	80	3R	15444855	15444873	CGACTTTAATCGCTACCAG		57	15444732	15444811	TGCGTAAAGTAATGCATCG		58	NA	
Drosophila melanogaster	50	Dys	FBgn0024242	FBtr0110918,FBtr0110917,FBtr0083764,FBtr0110919	3	4	8	81	3R	15310654	15310767	CGATAGTGATACGAGTCGC		59	15310812	15310830	AGACAATGATTCCAGGACC		58	NA	
Drosophila melanogaster	50	Dys	FBgn0024242	FBtr0083765	1	1	8	157	3R	15308359	15310765	ATTGCAATTGTCGTGAGTC		58	15310886	15310904	CGATCATCCAGATTCTGGG		59	NA	
Drosophila melanogaster	50	CG14291	FBgn0038660	FBtr0083724	3	1	1	60	3R	14737265	14737283	CCTTGTTGCAGTACTACCA		59	14737223	14737242	AAGGGATCCGTCTTAATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7694	FBgn0038627	FBtr0083632	1	1	1	93	3R	14416140	14416251	GCTGAAGAAGACGAATTCC		58	14416308	14416326	TTCATCCTGCCTAAACCTG		59	NA	
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083651,FBtr0083649,FBtr0083643,FBtr0083652,FBtr0083648,FBtr0083642	2	6	13	84	3R	14256555	14256573	CCAGACGGACAATATCGAC		59	14252824	14252843	ATGATTTCGATCCAGTTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	PKD	FBgn0038603	FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592	1	4	4	196	3R	14131625	14132352	AGCAGCTCACTGAATATCC		59	14131447	14131465	GTATTGTACTGGCAGTCCC		59	NA	
Drosophila melanogaster	50	alt	FBgn0038535	FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416	2	6	6	164	3R	13500933	13500951	GTAGCAACCACAATAGCAC		58	13500724	13500805	ATGTGTTTGTCGTCTTGGT		59	NA	
Drosophila melanogaster	50	alt	FBgn0038535	FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416	1	6	6	163	3R	13500932	13500950	TAGCAACCACAATAGCACC		59	13500724	13500805	ATGTGTTTGTCGTCTTGGT		59	NA	
Drosophila melanogaster	50	AttD	FBgn0038530	FBtr0083470	3	1	1	60	3R	13451400	13451418	CATTTCACAGTCATAGCCG		58	13451442	13451460	CCAGTTTGCAAATTGAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hmx	FBgn0085448	FBtr0112715	1	1	1	177	3R	13391176	13391194	ATTGGGTTTCATATCGCAG		57	13392859	13392877	ATTATTGTTGTTCGGGCTC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG31419	FBgn0051419	FBtr0083433	2	1	1	95	3R	13110932	13110950	AAGAATTACATCCTGCCGG		59	13111009	13111027	CTTCTTTGGATGGCATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14897	FBgn0038434	FBtr0083310	3	1	2	158	3R	12292102	12292197	GGTTCCGAAGATGATAGCA		59	12291962	12291981	TTCCCTTAGCCCTTTAAAGC		59	NA	
Drosophila melanogaster	50	CG34404	FBgn0085433	FBtr0112669,FBtr0112668,FBtr0112667	2	3	3	60	3R	11191520	11191538	TGAATCCGGAGAAGATCCA		59	11191416	11191497	GACCAGATTAATTTGCTCGT		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG34404	FBgn0085433	FBtr0112669,FBtr0112668,FBtr0112667	1	3	3	80	3R	11190290	11190366	AATCCAACCACAATCTGGG		59	11190228	11190246	TCTTCTGCTCTAGCTTCCT		59	NA	Nonspecific
Drosophila melanogaster	50	CG14866	FBgn0038315	FBtr0083081	3	1	1	61	3R	11143392	11143410	CAAGGGTCTAAACTCCCAC		59	11143434	11143453	CCATGATCTCCTCATTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957	3	1	12	101	3R	11126775	11126793	CTCAACACCCGTCTAAAGG		59	11128937	11132073	GATTAGGTCGTCTTCGAGC		59	NA	
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089963,FBtr0089966,FBtr0089967,FBtr0089962,FBtr0089961,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	1	10	12	204	3R	11120874	11120892	TTGCTCGAAGAAGACTTGG		59	11122404	11122422	ATTTCTTGTCAGCCTCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9611	FBgn0028487	FBtr0112937,FBtr0112938	2	2	5	136	3R	9522483	9522559	TTTCCGGATAGCTTTCACC		59	9522365	9522383	TGGCGATCATATTCCTGAC		59	NA	
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	1	8	8	283	3R	9504401	9504476	ACACGACGTAAATCAGGAG		59	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	sqd	FBgn0086897	FBtr0082854,FBtr0082857,FBtr0082856,FBtr0082855	3	4	4	252	3R	9468818	9468901	AACGACTGAGAAGGAACTC		58	9468584	9468602	CTCATCGCTGATCTCTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	beat-Vb	FBgn0038092	FBtr0082684	2	1	1	95	3R	8759111	8759131	GCTTTAATGACTTCGTAGAGG		58	8759187	8759265	CCAGAGAAACCTTTATCCCA		59	NA	
Drosophila melanogaster	50	CG14394	FBgn0038079	FBtr0114499,FBtr0113228,FBtr0114500	2	3	6	66	3R	8522002	8522020	GTCTGTCCATAGTCATGCA		59	8522474	8522492	TTTATGTTGAGACTCCCGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG18547	FBgn0037973	FBtr0082506	3	1	1	62	3R	7805322	7805340	GCTTAAGGAGTTCCTGACC		59	7805221	7805239	TATCTGGCATAGGTGAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6950	FBgn0037955	FBtr0082522,FBtr0082519,FBtr0082520	3	3	4	118	3R	7647072	7647092	CGAGGTGATCATTATTGAACC		58	7646915	7646933	CAGAGCTTATTGGTCCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33698	FBgn0053698	FBtr0091686	1	1	1	60	3R	6970605	6970623	ATACTCGAGGATTTGGACG		58	6970563	6970584	CAGGATTCGTGTAAATTTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3996	FBgn0037800	FBtr0082224	1	1	1	96	3R	6067376	6067394	AAAGCTAGGACCCATTGAG		58	6067454	6067528	GTAGTAGAGCTGCAATCCT		58	NA	
Drosophila melanogaster	50	Best1	FBgn0040238	FBtr0082183,FBtr0114590	3	2	2	80	3R	5991953	5992985	CAAATTGCTGCTCAGATGG		59	5991891	5991912	GCATAGTAAATGGTCAAGAAGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG6241	FBgn0037792	FBtr0082185	1	1	1	110	3R	5969268	5969289	CCATAAGACATTCAAGAAAGGC		59	5968646	5969199	TCTAGATTGCGCTTAGTTCTG		59	NA	
Drosophila melanogaster	50	CG12807	FBgn0037772	FBtr0082171	2	1	1	192	3R	5825480	5825626	GAATATGGGAATCTGCGAC		58	5825934	5825952	AAACGGATGATTCACAGAG		57	NA	
Drosophila melanogaster	50	CG16908	FBgn0037741	FBtr0082166	2	1	1	100	3R	5577208	5577284	AGCCTTAGTGATGTGATACC		58	5577127	5577146	AGTTTGTACTCCTGAGTCTG		58	NA	
Drosophila melanogaster	50	Kap-alpha3	FBgn0027338	FBtr0082108,FBtr0082106,FBtr0082107	3	3	3	158	3R	5402864	5402942	GAAAGACCAGGATGAAATGC		59	5402725	5402743	TTCTTCAGGTCAATGGACG		59	NA	
Drosophila melanogaster	50	Rel	FBgn0014018	FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338	3	4	4	60	3R	4870881	4870899	CACTACATACGACCTTTGC		58	4870839	4870857	TTCCGGCATTATTCTTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11967	FBgn0037646	FBtr0081958	2	1	1	87	3R	4807811	4807831	CATAATAGTTTGCGGACACAG		59	4807880	4807969	TCGGTTAAGCTTAGAAGCG		59	NA	
Drosophila melanogaster	50	CG2091	FBgn0037372	FBtr0078678	3	1	1	149	3R	1580055	1580074	ATCAACAATATCTACGGCAG		57	1579864	1579882	GTAGAGATCAGGAGTCTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG2185	FBgn0037358	FBtr0078732	1	1	1	61	3R	1479037	1479055	CAAGATCTCGTTCGAGGAC		59	1478994	1479012	ACATCTTCTGATCCACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CRMP	FBgn0023023	FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686	3	4	4	114	3R	1400049	1400129	CTACATCAAGAATGGCGAG		57	1400403	1400421	GCCAGGTATCGTTATTTCC		57	NA	
Drosophila melanogaster	50	Itp-r83A	FBgn0010051	FBtr0078687	3	1	2	93	3R	1357058	1357149	TATTGATTCTGTCGAAGAGGAG		59	1357421	1357440	GGCCAAAGATGTCATTACTG		58	NA	
Drosophila melanogaster	50	kkv	FBgn0001311	FBtr0078798,FBtr0078800,FBtr0078799	2	3	3	98	3R	1204858	1204876	TAAGAATTCGGTGATGGCC		59	1204709	1204796	TTGTTGTTAATCGGTGCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11999	FBgn0037312	FBtr0078807	3	1	1	148	3R	1180313	1180332	ACTACTTCTTACAGGACTGG		58	1180057	1180075	CAGATCCGTACTTGACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31522	FBgn0051522	FBtr0078941,FBtr0078939	3	2	4	148	3R	272465	272486	CCTCACATATGTCTATCTGGTC		59	271122	272149	AACCGGAAATGCCTATCTC		59	NA	
Drosophila melanogaster	50	CG31522	FBgn0051522	FBtr0078942	1	1	4	123	3R	271958	272154	TTTATGAGTGCTTGATGGG		57	270250	270268	TTCGAGAAGTAGTACCACC		58	NA	
Drosophila melanogaster	50	CG14645	FBgn0040687	FBtr0078908	2	1	1	60	3R	160991	161011	GTGTGAGACACTTAACAAACC		59	161033	161051	CATGAATCCTGTTTCGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arf79F	FBgn0010348	FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572	1	6	7	81	3L	22862819	22862837	CTTTACAGTGTGGGATGTG		58	22862563	22862777	GATAAGACCTTGTGTATTCTGG		58	NA	
Drosophila melanogaster	50	CG11425	FBgn0037167	FBtr0078507	1	1	1	70	3L	22467998	22468016	ACTTATTGTCCTGGTGGAG		58	22468050	22468068	CATCACAGAAGAAACCACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syn1	FBgn0037130	FBtr0078450,FBtr0078451	2	2	2	246	3L	21739983	21740001	ACTACCAGAGGGAGTTCTC		59	21739703	21739774	TCCATGTCCAGTTCAATCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Aef1	FBgn0005694	FBtr0078349,FBtr0078350,FBtr0078348	3	3	3	117	3L	21429089	21429107	ACCATGTGAAGATCCACAC		59	21429250	21429269	TAGACTTTGTCCATGACGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CSN3	FBgn0027055	FBtr0078269	1	1	1	109	3L	20833655	20833673	TCTTCGAAGTCTGCATCAC		59	20833493	20833582	ATACGCTATCTTGCCTTCG		59	NA	
Drosophila melanogaster	50	CG11796	FBgn0036992	FBtr0078226,FBtr0078225	2	2	2	141	3L	20432114	20432190	CTACCATCAAGACGTACGG		59	20431991	20432010	TCAATGAAGTTCAGCTTGGT		59	NA	
Drosophila melanogaster	50	CG7757	FBgn0036915	FBtr0074891,FBtr0074892	3	2	2	60	3L	19904506	19904524	CAGTTATACTGACCCAGGA		57	19904548	19904566	CGTATGCTTATCTTACCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fibp	FBgn0036911	FBtr0089595,FBtr0089596,FBtr0089594	3	3	3	98	3L	19809913	19809981	ATACTTACCAGCACACTGG		58	19809833	19809852	TTTCCTTGTCGAGTAGACAG		59	NA	
Drosophila melanogaster	50	CG9392	FBgn0036895	FBtr0074948	2	1	1	60	3L	19614225	19614243	GACGAACACAAACTACTGG		58	19614267	19614285	TTCTCTTGATCCGCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rept	FBgn0040075	FBtr0074988	2	1	1	60	3L	19249613	19249631	CACTAACTATCGCAGTCCG		59	19249654	19249673	TATGATGATCATGCGATCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18363	FBgn0036808	FBtr0075090	1	1	1	80	3L	18690908	18690927	CAACGGATCTGATTAACGTG		59	18690783	18690867	CGAAGACATGCTTATAGTTGC		59	NA	
Drosophila melanogaster	50	GNBP2	FBgn0040322	FBtr0075097,FBtr0075094,FBtr0075095,FBtr0075096	2	4	4	86	3L	18667069	18667159	CCAAGCAATTGAGAATTGC		57	18667001	18667020	CATATAAGTGGTTTCCGGAG		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	term	FBgn0003683	FBtr0075112	2	1	1	206	3L	18586681	18586699	CCCATAATCTCCAGCTTCG		59	18586493	18586511	AATATCCATAACGGCCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	W	FBgn0003997	FBtr0075133	1	1	1	262	3L	18165271	18165289	TAATCCAGTCTGCCATACC		58	18163059	18163077	AAGGGCTAGCTGATTTCAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13698	FBgn0036773	FBtr0075137	1	1	1	60	3L	18083552	18083570	GGGTTACTACGATAGTCCA		57	18083449	18083467	AAACGGTCCGAAATAACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Eip75B	FBgn0000568	FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149	3	4	4	111	3L	17948399	17948417	GAGATGGATATCGTTGGCT		58	17948141	17948324	TGAGTATTCCGATCTGCTG		58	NA	
Drosophila melanogaster	50	Pep	FBgn0004401	FBtr0075198	1	1	3	184	3L	17636609	17636627	TTTGGTAACAACATGCGAC		58	17633134	17633152	ATGGAGACTCCTTGGTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6333	FBgn0036731	FBtr0075224	2	1	1	60	3L	17473857	17473876	AAAGACTCAGAAGATGTCCT		57	17473816	17473834	GACAGTTTGTAGAGACTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4998	FBgn0036612	FBtr0110866	3	1	2	142	3L	16336460	16336479	CCTCTACAACATTCCCACTC		59	16336584	16336909	TTCCATAATAGGCACGCTG		59	NA	
Drosophila melanogaster	50	CG10516	FBgn0036549	FBtr0075512	3	1	1	146	3L	15962650	15962733	AAAGTACCGAGAAACCGAC		59	15962843	15962861	AGGTAGTGGAAGTACTCGT		59	NA	
Drosophila melanogaster	50	pHCl	FBgn0036542	FBtr0100035	1	1	4	89	3L	15861721	15861739	AGTCCAGTTCGGATAAGGA		59	15860711	15861668	TCAGAGTGCCATTTACAGG		59	NA	
Drosophila melanogaster	50	RecQ5	FBgn0027375	FBtr0100362,FBtr0075715,FBtr0075714	3	3	3	83	3L	14621498	14621575	GATGGAAGCTTAGGAGATGG		59	14621434	14621455	CTGATCGTTGTTTATCATCTGC		59	NA	InUTR
Drosophila melanogaster	50	shd	FBgn0003388	FBtr0075675,FBtr0075676	3	2	2	96	3L	14613848	14613923	TAGAAACGTTAGCCAACAC		57	14613983	14614001	CGATACTCGCAGAATTCAC		58	NA	
Drosophila melanogaster	50	Hsc70Cb	FBgn0026418	FBtr0075771,FBtr0075772,FBtr0075773	2	3	3	200	3L	14032908	14032926	GATGATATCGACGTCTCGT		58	14033087	14033172	GTTAAAGACCTGCTCAATAAGC		59	NA	
Drosophila melanogaster	50	Hsc70Cb	FBgn0026418	FBtr0075771,FBtr0075772,FBtr0075773	2	3	3	200	3L	14032908	14032926	GATGATATCGACGTCTCGT		58	14033087	14033172	GTTAAAGACCTGCTCAATAAGC		59	NA	
Drosophila melanogaster	50	caps	FBgn0023095	FBtr0075832,FBtr0111005,FBtr0075833	3	3	3	158	3L	13222138	13222156	ATTTGTAGCTGTGCTTTCG		58	13231812	13244269	GTTCTGCCGGTATAATCCT		58	NA	InUTR
Drosophila melanogaster	50	CG11255	FBgn0036337	FBtr0075896,FBtr0075895	1	2	2	118	3L	13013917	13014182	TACATTTCGGGCTTCTTCC		59	13013817	13013836	AATTGCGATATGAATGGTGC		59	NA	
Drosophila melanogaster	50	CG11658	FBgn0036196	FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127	3	5	5	186	3L	11694739	11694757	TAATGGTCTCAGTGAGGCT		59	11694509	11694589	GCTGTCATTTACATGCGAG		59	NA	
Drosophila melanogaster	50	CG6084	FBgn0086254	FBtr0076139	3	1	2	169	3L	11614456	11614474	ATTCGATACCAGGTTCAGC		59	11613757	11614323	CCGTATTGGTTGAGTAGGG		59	NA	
Drosophila melanogaster	50	Sgs3	FBgn0003373	FBtr0076096	2	1	1	126	3L	11505497	11505515	AACTACAACTACTTGTGCG		57	11505605	11505623	CTTAGATGTCGTGCATGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mnf	FBgn0036134	FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228	1	5	5	98	3L	11109449	11109535	ACAATACACAGGATCTGTTCC		59	11109371	11109389	ATATGGCCTGAACGATGAG		59	NA	
Drosophila melanogaster	50	CG14154	FBgn0036093	FBtr0076257,FBtr0076258	1	2	2	65	3L	10635838	10635856	CCATTTCCAAGCAGATGGA		59	10635885	10635903	CACCATCGTATGAATCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CalpB	FBgn0025866	FBtr0076343	3	1	1	62	3L	9883640	9883659	GCATGGATCTTATGAAGCAC		59	9883902	9883920	CCAGTAAAGTCCTCCATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	I-2	FBgn0028429	FBtr0112935,FBtr0076370	2	2	2	71	3L	9829169	9829187	ACTAAAGACTTCGCGTAGC		59	9829048	9829066	TTCAGCTCATCGAACTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ilp4	FBgn0044049	FBtr0076372	3	1	1	64	3L	9796941	9796959	TTATCCGTAAGCTACAGCA		58	9796895	9796913	CTTTAACCTTCCCGTTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8329	FBgn0036022	FBtr0076387	1	1	1	60	3L	9631380	9631398	CTGCGAATGAACAATGGAG		59	9631422	9631440	TCAGGACCCAATTGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MTF-1	FBgn0040305	FBtr0113323,FBtr0113322,FBtr0076459	2	3	5	107	3L	9427511	9427529	CTCAGTCGCTATAGATGCA		58	9428957	9428976	GCATTTAAAGCTGTAGTCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32022	FBgn0052022	FBtr0076597	2	1	1	61	3L	8713836	8713854	AGCGTAAAGTATCAGAGGC		59	8713793	8713811	CATGAAGTTCTCCATTCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGEF4	FBgn0035761	FBtr0076886,FBtr0076885	1	2	2	146	3L	7314973	7315051	GCAAATGCGAATATGATACG		57	7314846	7314864	CCTTTCCCATTGGATTTCC		58	NA	
Drosophila melanogaster	50	CG32387	FBgn0052387	FBtr0076920,FBtr0110848	2	2	3	94	3L	7157941	7158035	CTACAGACACAAGCAAAGTC		58	7157866	7157884	GAATGGTGGCATAATACCG		58	NA	
Drosophila melanogaster	50	Cpr65Ea	FBgn0035735	FBtr0076929	1	1	1	60	3L	7079518	7079537	TACCATCACCAAGTTCTTGG		59	7079477	7079496	CTCGATATCATAGGCGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dikar	FBgn0052393	FBtr0076954,FBtr0076953	1	2	2	165	3L	6734820	6734841	GTTTAGTTCTGCCTTTGATCTG		59	6734614	6734632	TGTGATTTCCTTGGCTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32394	FBgn0052394	FBtr0076955	1	1	1	221	3L	6730704	6730722	TCTACGTGAAGAACCATCG		59	6730378	6730463	CAGTGTATTCATTGTTGTGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG13297	FBgn0035685	FBtr0077020	1	1	1	61	3L	6149978	6149996	CTACACTCTTCCTGATGGA		57	6149935	6149953	CTGAAGTTCCACTCAGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr65Aw	FBgn0052404	FBtr0077023	2	1	1	64	3L	6135437	6135455	TAATCCTGGTCAGCTTCTG		58	6135391	6135409	GTATCTCAGTATCTGGGCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	loj	FBgn0061492	FBtr0077053,FBtr0077052,FBtr0077051	1	3	3	124	3L	6088573	6088752	TACGTGTCCTTTAGTGTGG		58	6088839	6088858	GATACCTGATCCGTGTAGTC		59	NA	
Drosophila melanogaster	50	CG10472	FBgn0035670	FBtr0077066	2	1	1	194	3L	6055555	6055573	ATTTCCCTGATCAAGTTGC		57	6054776	6054794	GTTGTTCATGATGGGAACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12027	FBgn0035585	FBtr0073372	1	1	1	61	3L	5012006	5012027	CTACAAGGATCCCATTTATCAG		58	5011966	5011984	GACTCTTCAGCCGATACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Src64B	FBgn0003501	FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321	3	5	5	178	3L	4596210	4596228	TAAATCCCGCGATGAATCC		59	4595932	4596069	TCTCAAAGAACCAGTCTTCG		59	NA	
Drosophila melanogaster	50	Src64B	FBgn0003501	FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321	1	5	5	158	3L	4596191	4596209	GATCTGAGCTTCATGAAGG		57	4595933	4596069	CTCAAAGAACCAGTCTTCG		58	NA	
Drosophila melanogaster	50	dyl	FBgn0066365	FBtr0073341,FBtr0073343,FBtr0073342	3	3	3	70	3L	4295826	4295844	CAGTACGATCCCTATGTGC		59	4295774	4295792	TAGAAATCGTACCAGGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr64Ac	FBgn0035512	FBtr0073252	2	1	1	145	3L	4212506	4212524	CGGAGTAACCGATCATCAC		59	4212379	4212397	TGAATCCGTTGACCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	2	9	15	80	3L	3083796	3084813	TCGCCACTTATATGAATCGA		58	3084853	3084874	CCAAATTAAGTAGTGAGAACCC		58	NA	
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996	3	6	15	82	3L	3083796	3085208	TCGCCACTTATATGGTCAC		59	3085252	3085272	ATATGGTGCATAGAAGTTGGG		59	NA	
Drosophila melanogaster	50	CG1244	FBgn0035357	FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933	3	6	6	91	3L	2640505	2640584	GTCTGTGGAAGGATGTACC		59	2640639	2640657	CACTTGTAGGACAGGTGAG		59	NA	
Drosophila melanogaster	50	CG16758	FBgn0035348	FBtr0072966,FBtr0072964,FBtr0072963,FBtr0072965	2	4	4	168	3L	2499617	2499702	AACCACGATGAGGTTATGG		59	2499467	2499485	CTTAGATGCGAGCTCAGAG		59	NA	InUTR
Drosophila melanogaster	50	CG32306	FBgn0052306	FBtr0072892,FBtr0072895	2	2	4	229	3L	2461254	2463060	TAGATGCGGAATTCGAACC		59	2463252	2463271	AATCGGAGAGTAATCCATGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5690	FBgn0035295	FBtr0072842	2	1	1	108	3L	1949145	1949166	CTGCAAGAATATCATCAGAAGC		59	1949233	1949315	TGAGATTGGTCTCAGTTTCAG		59	NA	
Drosophila melanogaster	50	n-syb	FBgn0013342	FBtr0072819	1	1	5	167	3L	1636901	1636920	GCATAGAGTACCTTCATCCT		58	1635945	1635964	GTTCTTGTCTTTCTTTCCCA		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12003	FBgn0035234	FBtr0072744	1	1	1	60	3L	1566463	1566481	ATCATTGATCCCAGTCTGC		59	1566505	1566523	CAAAGTTGTCTCGGAAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Reg-2	FBgn0016715	FBtr0072561	1	1	1	143	3L	606251	606269	GATTATCCCAACTTTGGGC		58	605661	605679	CTCAATTAGGTGGTTGGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG12313	FBgn0035124	FBtr0072507	2	1	1	60	3L	276324	276342	GTCTGGAAACGACAATGAC		58	276363	276384	TCCTAGAACACTAAGAAACGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pk61C	FBgn0020386	FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466	1	8	8	86	3L	142804	142822	ATATCGCGACTGCTTAGTG		59	142872	142953	GTCGAAAGAGTTCTTTGCG		59	NA	
Drosophila melanogaster	50	Pk61C	FBgn0020386	FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466	1	8	8	86	3L	142804	142822	ATATCGCGACTGCTTAGTG		59	142872	142953	GTCGAAAGAGTTCTTTGCG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-176	FBgn0086659	FBtr0091917	2	1	1	62	2R	19727509	19727527	AAGGCAGAGTAAGGAATGG		58	19727465	19727483	CTCGCGGATTTATAACCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:229	FBgn0065073	FBtr0091664	3	1	1	111	2R	18961459	18961477	CAGAACATGGCATCATGTG		59	18961366	18961384	GCATTATTCTAAGCAGCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6a15Psi	FBgn0033303	FBtr0088689	1	1	1	60	2R	4457403	4457424	GGAACTTCATTACTGATACCTG		58	4457445	4457463	GATGTGGATATAAGTGCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ETH	FBgn0028738	FBtr0072426	3	1	1	60	2R	20682574	20682593	CTTGACAACAACGCTATTCC		59	20682533	20682551	GATCGAAATCCTTCCAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k09913	FBgn0021979	FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961	3	4	4	100	2R	18958339	18958357	TGAGATGGGATTCGATGTG		59	18958497	18958515	GGAATCGAATAGTCTCGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	fd59A	FBgn0004896	FBtr0071898	2	1	1	74	2R	18756703	18756724	CATACTACAAGGACAAATTCCC		58	18756759	18756777	TTATGAAGCAGTCGTTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30265	FBgn0050265	FBtr0071891	3	1	1	94	2R	18720503	18720521	TTTGTACATCGGTCGACTG		59	18720578	18720658	GAGTCCAATCGTATTCTGGA		58	NA	
Drosophila melanogaster	50	CG30275	FBgn0050275	FBtr0071874	1	1	4	118	2R	18595918	18596191	GTACATTGTGGATAGGGCC		59	18596273	18596291	TCTGTCCCATTACCTCCTC		59	NA	
Drosophila melanogaster	50	CG4329	FBgn0034745	FBtr0071940	1	1	2	60	2R	18499375	18499393	GGAAACCGATCATCATGAC		58	18499284	18499303	GTCTCATAGTTCCAAATCCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10344	FBgn0034729	FBtr0071840	1	1	2	169	2R	18313878	18313896	ATACATGTGGGTCATCCAC		59	18313669	18313687	TCTTTGCTCTCCTTAGTGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG30392	FBgn0050392	FBtr0071618	1	1	1	106	2R	17179225	17179243	AGAACCATGCTGGATTACG		59	17179077	17179155	TAGACAAAGTCAAGACCGC		59	NA	
Drosophila melanogaster	50	Xbp1	FBgn0021872	FBtr0071571	2	1	2	189	2R	17031809	17031828	ATACTACAGAACAAGTGCGA		58	17031980	17032051	CTGTTGTATACCAGCCCTC		59	NA	
Drosophila melanogaster	50	RpS18	FBgn0010411	FBtr0086273,FBtr0086274	3	2	2	240	2R	16151784	16151803	CCTGCGTATCATGAATACGA		59	16152066	16152084	ATCGATGATGTCCTTCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15128	FBgn0034467	FBtr0086481	1	1	1	108	2R	15574057	15574162	AAGAAGGTTCAGCAATTGG		58	15573967	15573985	ACACCTCGTTAAGGAACTC		58	NA	
Drosophila melanogaster	50	CG10916	FBgn0034312	FBtr0086749	1	1	1	60	2R	14061969	14061987	CTTTACCAGGGTATCCTGC		59	14062011	14062029	GGATGTACATGACCTTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pcl	FBgn0003044	FBtr0086735	1	1	1	238	2R	14024861	14024879	CTGTCAGCCATAAGATCAC		57	14025140	14025213	AACAAAGAACATATCGCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Mapmodulin	FBgn0034282	FBtr0113091	2	1	3	133	2R	13755957	13755975	GATCTTCAAGATGTTGCCA		57	13755582	13755798	CATTGCACTTATCTCCCAC		58	NA	
Drosophila melanogaster	50	Rab4	FBgn0016701	FBtr0086830,FBtr0086831,FBtr0086829	1	3	3	82	2R	13461765	13461847	AGAGAACGAGCTTATCTTCC		58	13461892	13461910	TGGTCTTTGAGCACTTGAG		59	NA	
Drosophila melanogaster	50	RpL18A	FBgn0010409	FBtr0086947	3	1	1	68	2R	13434113	13434131	ATTAAGGTGGACTCGATCC		58	13434063	13434081	CTTTGAATCGTGGAACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4847	FBgn0034229	FBtr0086937,FBtr0086934,FBtr0086933	3	3	5	199	2R	13400212	13400290	GACTTCTTGAGCCAATCTG		58	13400453	13400471	TTCAGACCGGTCAATTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	mbl	FBgn0053197	FBtr0086994	3	1	4	131	2R	13249486	13249504	AATTCTCTGGCATGGTACC		59	13249598	13260596	GAGGGTGTCCAGTAAATGAG		59	NA	
Drosophila melanogaster	50	GstS1	FBgn0010226	FBtr0087005,FBtr0100258,FBtr0087006	3	3	3	121	2R	12981866	12981885	CATTCTACCTGGAGAAGCTC		59	12981677	12981697	GACCATGTAGTTCATGTAGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	veg	FBgn0015562	FBtr0087051,FBtr0087052	2	2	2	60	2R	12843872	12843890	TGGATTAATCACCTTGGGA		57	12843914	12843932	GTTCTTGAGTAGCAGTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ef1beta	FBgn0028737	FBtr0087041	1	1	1	90	2R	12756214	12756232	ATCTATTCGGATCCGACGA		59	12756286	12756304	TTCTTAGACTTCTTGGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dek	FBgn0026533	FBtr0100437,FBtr0100438,FBtr0100436	1	3	4	119	2R	12747181	12747201	CCAATCTTGAGGAGATTACGA		59	12747282	12747364	TCGCAATTAACGCTTTCAC		59	NA	
Drosophila melanogaster	50	unc-104	FBgn0034155	FBtr0113089	2	1	4	155	2R	12648210	12648919	ATGCGAATAAGGATGAGCT		58	12647993	12648011	TAAGTTTCTCCTCCCAGGT		59	NA	
Drosophila melanogaster	50	DAT	FBgn0034136	FBtr0087125	1	1	1	80	2R	12448479	12448561	CAAATTGTAGACCGTTTGAGAG		59	12448420	12448438	TTCCCATGGCATACAAGTC		59	NA	
Drosophila melanogaster	50	Menl-2	FBgn0029153	FBtr0100603,FBtr0100601,FBtr0100602	1	3	3	247	2R	12303329	12303347	GTACTTGTTGGAGCAACTG		58	12303033	12303051	AAAGTCAGACAGTTGTTGG		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG7747	FBgn0034109	FBtr0087179	2	1	1	94	2R	12180219	12180297	GCTCTCAGTTCTTTATCACCT		59	12180145	12180165	TTGAAGAGTGTCTAATCCTCC		58	NA	
Drosophila melanogaster	50	mrj	FBgn0034091	FBtr0087193,FBtr0087196,FBtr0087194,FBtr0087195	1	4	5	149	2R	12093318	12093418	AAGTGAAGAAGGCATATCGA		58	12092510	12092528	ACTCATCGTATATGCGACG		59	NA	
Drosophila melanogaster	50	CG33462	FBgn0053462	FBtr0087284	2	1	1	94	2R	11584621	11584715	CTTGCTAATAACCGTTCGC		59	11584773	11584791	CATTGTACTCCTGGAAGGG		59	NA	
Drosophila melanogaster	50	CG30081	FBgn0050081	FBtr0087365	3	1	1	60	2R	11095728	11095748	CCAACCTGAACATATAAGACC		58	11095767	11095788	AGCTATGCCATTGTATCTAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10249	FBgn0027596	FBtr0087429,FBtr0112929	2	2	4	123	2R	10793453	10797741	TTTGATGTGGCAGATTCCT		59	10793348	10793366	TTTCATATTGGACCTCCGC		59	NA	
Drosophila melanogaster	50	CG10209	FBgn0033971	FBtr0087462	2	1	1	129	2R	10735327	10735346	AGAAGACGATTATTCAGTGG		57	10735166	10735184	TCCTGGTTTAGTTCGATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34444	FBgn0085473	FBtr0112748	1	1	1	93	2R	10257485	10257565	GTTCGAATTGCATGGATTAGG		59	10257620	10257638	CACACCATTGAGATCTCCC		59	NA	
Drosophila melanogaster	50	CG8493	FBgn0033716	FBtr0087903,FBtr0087902	1	2	2	60	2R	8226604	8226622	GTGGCATCCATGTTATCTG		58	8226646	8226664	ACCTCGTATCTGTTTAGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SIP2	FBgn0061197	FBtr0089670,FBtr0089669	1	2	4	178	2R	8191471	8191489	AAGGAAGTGTCCAAGATGC		59	8191253	8191330	CTCAGCTTGTTGTTTACCTG		59	NA	
Drosophila melanogaster	50	Oda	FBgn0014184	FBtr0088015,FBtr0088013,FBtr0088014	1	3	3	283	2R	8055513	8055531	GAACAGATCACGATAGGGC		59	8055182	8055203	CAGAATCGTATTCCAATTGGTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG34232	FBgn0085261	FBtr0112426,FBtr0112425	2	2	2	80	2R	8052971	8052989	TTTGCCACTATCTTGGTGG		59	8052909	8052927	CTTGTGGTTCAGATGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9027	FBgn0033631	FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897	3	4	4	193	2R	7269622	7269641	AATCGGATAATACCCAGGTC		58	7269385	7269466	ACCGTGATCAACCTTATCG		59	NA	
Drosophila melanogaster	50	cag	FBgn0017414	FBtr0088239	3	1	1	60	2R	6780923	6780941	ACCCATCTCGAATAAGGAC		58	6780881	6780901	GATAGGCTCTATCAGAGTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mat1	FBgn0024956	FBtr0088255	1	1	1	60	2R	6626857	6626876	AGACAAACAAGCGTATTGAG		58	6626816	6626834	TTATTCCGCTGAATGACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089365	1	1	26	186	2R	6419759	6419777	TGAGGATTTGACACTGGAC		59	6375918	6419548	ATCCACGGTAATCACTTGG		59	NA	
Drosophila melanogaster	50	micr	FBgn0033522	FBtr0088262,FBtr0088263	2	2	3	125	2R	6322086	6322165	GAGGAAATGGATGTTTCCC		58	6322252	6322272	CTCTTCAGTCATTAGGTTCTC		57	NA	
Drosophila melanogaster	50	CG12900	FBgn0033515	FBtr0088323	1	1	1	60	2R	6266266	6266286	GAGATCATACTTGGAACTCTG		57	6266226	6266244	GGATCTTCTTACGTCTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hr46	FBgn0000448	FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367	2	4	4	111	2R	6095624	6095704	CAATTTCCGCGATATTTCC		57	6095531	6095549	CGAATCTATCGAGAACAGC		57	NA	
Drosophila melanogaster	50	gem	FBgn0050011	FBtr0089758,FBtr0089759	1	2	2	95	2R	6023164	6023252	ACATGGACGATTATAGCCAG		59	6023310	6023328	TTGAAAGATAGGCCGTGAG		59	NA	
Drosophila melanogaster	50	sut4	FBgn0028560	FBtr0089675,FBtr0089674	2	2	2	60	2R	5973577	5973595	GCCACTATCATTTCGATCC		58	5973535	5973555	ACACCAATAGGAGTATCTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	3	9	9	68	2R	5738998	5739016	CTTTGAGTTGAATGGCCAG		59	5738880	5738966	ACATGGATCTCCTTAACGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	sec31	FBgn0033339	FBtr0088642	1	1	2	114	2R	4783045	4783063	AAAGACGACATCGATAGCA		58	4783141	4783468	TATCTTGCGTATGGGTCAG		58	NA	
Drosophila melanogaster	50	CG14756	FBgn0033275	FBtr0088804	1	1	1	82	2R	4092805	4092823	GGAGTCCATCGATGAACTG		59	4092741	4092759	GTGAGAGGTCGATTTCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lig	FBgn0020279	FBtr0100575,FBtr0088775,FBtr0088776,FBtr0088774	3	4	4	81	2R	3961935	3961953	TGCCATACTATCAGCAACC		59	3961997	3962988	TAATATCCCTGCACATGTGG		59	NA	
Drosophila melanogaster	50	lin19	FBgn0015509	FBtr0088845,FBtr0088847,FBtr0088848,FBtr0088846	3	4	4	94	2R	3806336	3806415	TGCGAAGAGGTTCTTATCG		59	3806473	3806491	ATCCGTTTCAGATCATCGT		58	NA	
Drosophila melanogaster	50	mus205	FBgn0002891	FBtr0088831	1	1	1	127	2R	3683669	3683746	AAAGAACGATTGTACTCCAG		57	3683836	3683854	CCTCTGTTTCGAACATGTC		58	NA	
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012	1	7	7	84	2R	3287432	3287450	GATCTACGACAAGGAGACG		59	3287308	3287384	GGTGACTTCATTCCTGGTC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111056	2	1	60	81	2R	3226196	3226215	GGCAAATATAGTTGTCGAGC		59	3219874	3226152	ATCTGGGAGGTACATTCAC		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111067	3	1	60	169	2R	3251527	3251545	CAAAGCTATGAATCGGAGG		57	3249363	3251394	TACTTTCCATCCGTCTCTG		58	NA	
Drosophila melanogaster	50	CG17266	FBgn0033089	FBtr0086144	3	1	1	92	2R	2563161	2563180	CAAATACAGTCCCAACTGAG		58	2563022	2563040	TTCGAATATCATTCGTCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bin3	FBgn0033073	FBtr0085993,FBtr0085992	2	2	2	81	2R	2126343	2126361	GGTAGGATTCAGTCACAGC		59	2126405	2126496	TGCATACAACTGTATGGGTC		59	NA	
Drosophila melanogaster	50	CG8335	FBgn0033069	FBtr0085990	3	1	1	60	2R	2088677	2088695	GCATTGATCTGGATATGGC		58	2088717	2088737	GGATAGGCGAACATATTTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ap	FBgn0000099	FBtr0086058	2	1	2	115	2R	1604289	1604800	GACGTCAGATACAGGATCG		59	1604192	1604210	TGAGTAGCATGAGGATTCC		58	NA	
Drosophila melanogaster	50	CG10396	FBgn0033020	FBtr0086089	3	1	1	60	2R	1241694	1241712	GTGGAGGAGATGGTATTCG		59	1241736	1241754	TTGATTCCATGACCAACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-525f	FBgn0083033	FBtr0113548	3	1	1	67	2L	20419803	20419821	ATAAACCTGCCTGTGTCTC		59	20419851	20419870	TTAATTACTCAGGATGCCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1832	FBgn0032979	FBtr0085964,FBtr0100407	3	2	2	130	2L	22168220	22168238	GATACAATTACGCCCTGGT		59	22168055	22168126	GGATATGGTGTTAGCTGCA		59	NA	
Drosophila melanogaster	50	CG6448	FBgn0032976	FBtr0085939,FBtr0113045,FBtr0085938	1	3	5	212	2L	22156803	22158518	GTCCAAATTCAAGGTGCTG		59	22158694	22158712	TGCCGATACGATTTATTCC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG31619	FBgn0051619	FBtr0110959,FBtr0085901,FBtr0085902	1	3	3	110	2L	21713301	21716335	GATCCCACCTACATCAAGG		59	21716408	21716427	CGTTCGAGAGTATTCAAGGA		59	NA	
Drosophila melanogaster	50	His2B:CG33872	FBgn0053872	FBtr0091876	1	1	1	61	2L	21528097	21528115	AAGAACATCACCAAGACCG		59	21528054	21528072	TAGATGGCATAGCTCTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	nrv3	FBgn0032946	FBtr0081520,FBtr0081518,FBtr0081521,FBtr0081519	1	4	4	88	2L	21385322	21385341	ACATTAGTTTGGTACGAGTC		57	21385391	21388515	AGATCTTGGTACGATTTCAG		57	NA	
Drosophila melanogaster	50	E2f2	FBgn0024371	FBtr0081501	1	1	1	80	2L	21155158	21155178	GACATCTTTGGAGATGATTCC		58	21154977	21155116	CAGCTCGTAATGATTACGC		58	NA	
Drosophila melanogaster	50	CG18810	FBgn0042133	FBtr0081386	2	1	1	60	2L	20649228	20649248	GATGTCCAACTATGTCATGTG		58	20649270	20649288	CTTCATAAGCTTGGGATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10492	FBgn0032748	FBtr0113043,FBtr0081148	1	2	2	166	2L	19055919	19055937	TATTAACGTTCCACTGCAG		57	19056067	19056264	CTTCGTTGACACTATCGTG		58	NA	
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017	1	6	12	101	2L	17651479	17652674	TCTGATACTACTCGTCTTGGT		59	17651398	17651416	TTGATGATATTCTCGCGCA		59	NA	
Drosophila melanogaster	50	CG6860	FBgn0032633	FBtr0080969	1	1	2	84	2L	17370896	17370916	CGATATTAAAGCACGATTCCC		59	17368378	17370852	CAAATTAGATTCAGCCAGAGG		58	NA	
Drosophila melanogaster	50	Tpr2	FBgn0032586	FBtr0080867,FBtr0080866	3	2	2	94	2L	16505937	16506015	CGCCTGTTTGAAATATCGTC		59	16506072	16506090	GTTTCATTACACTGACCGC		59	NA	
Drosophila melanogaster	50	CG4580	FBgn0032585	FBtr0080865	1	1	1	60	2L	16489197	16489216	ACATGCTCTATAAGGAACGA		58	16489239	16489257	ATTTCCAGGATATTGGCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL4	FBgn0001995	FBtr0080843	2	1	1	60	2L	16328245	16328263	ATTCTATGCTGAAGCACGA		59	16328203	16328221	TGCTCCAGATGTTTCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dyn-p25	FBgn0040228	FBtr0080693,FBtr0080694	2	2	2	101	2L	15006135	15006153	CAATTCAGCAAGGGAATCG		59	15006218	15006236	CACATAGGATCCAATGGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32970	FBgn0052970	FBtr0114461,FBtr0080622	2	2	2	80	2L	14309125	14309143	GCAACACTTTATACCGCTG		59	14309420	14309438	TTAGGCTGGCTTTCTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	smi35A	FBgn0016930	FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289	1	5	5	80	2L	14189225	14195743	GAGCTAATGAGCTTGAACCT		59	14189164	14189182	GAAGCGTCGTATGAGACTC		59	NA	
Drosophila melanogaster	50	smi35A	FBgn0016930	FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289	1	5	5	80	2L	14189225	14195743	GAGCTAATGAGCTTGAACCT		59	14189164	14189182	GAAGCGTCGTATGAGACTC		59	NA	
Drosophila melanogaster	50	CG16956	FBgn0032523	FBtr0080520	1	1	1	60	2L	13413910	13413928	TACCACCAAGTAAGGACCA		59	13413868	13413888	GGCTCCCTTATGAAATAAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vm34Ca	FBgn0003983	FBtr0080521	2	1	1	184	2L	13411507	13411526	TAAGGAGGATAAGATGCTCG		58	13411342	13411360	TGAACAGGTAGTTCTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sir2	FBgn0024291	FBtr0080434	1	1	1	60	2L	13168582	13168603	CAGACCCAAATAGAAAGATCTG		58	13168624	13168642	TTTACACTGCTGCTAACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SC35	FBgn0040286	FBtr0089899,FBtr0089898	1	2	2	80	2L	12432196	12432318	GGAGTGCGAGATATGACTC		59	12432134	12432152	TACAGCATGACACAGATGG		59	NA	InUTR
Drosophila melanogaster	50	Patsas	FBgn0029137	FBtr0080363,FBtr0080362	1	2	2	60	2L	12101695	12101713	TACTTTGACCACCACTGTC		59	12101653	12101671	ACCACATTCTGTTCCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6686	FBgn0032388	FBtr0089572,FBtr0089573	3	2	2	62	2L	11985837	11985856	TTACAGTGCAGAAGAGTTGG		59	11985733	11985751	TGCCGAAGTTTCTTAACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	crol	FBgn0020309	FBtr0080260,FBtr0080263,FBtr0080261	3	3	4	152	2L	11797737	11797843	TGAAACCGATCATAATTCCC		57	11797604	11797622	CCGCATTATGTGAGATGAG		58	NA	
Drosophila melanogaster	50	CG31705	FBgn0028490	FBtr0080244,FBtr0080243,FBtr0080242	2	3	3	77	2L	11524601	11524620	AGCTGTTTACTATCCACAGG		59	11524475	11524493	AATGCTCCAGCGATAAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)06225	FBgn0010612	FBtr0110872,FBtr0110873	2	2	3	274	2L	10976255	10976273	CAAGGGATCAGGACTTGTG		59	10975910	10975928	TGTAGCCTACAATGTGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31715	FBgn0051715	FBtr0079996	1	1	1	180	2L	10341918	10342156	GGAGCAGACATAAATAGAAAGG		58	10342349	10342370	CAAGGAGTTTCTTAATCTCGTC		58	NA	
Drosophila melanogaster	50	CG4995	FBgn0032219	FBtr0079989,FBtr0079991,FBtr0079990	2	3	3	60	2L	10324288	10324309	ACCATTCTAAGGGATATTCCAG		59	10324399	10324417	GCATAAGGTACTCGAAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	nAcRalpha-30D	FBgn0032151	FBtr0079913	3	1	6	98	2L	9825639	9825657	CTGGAGGTTAAGTTCGGAC		59	9819323	9825309	CTTCTCGTCCAAATTTAACCAC		59	NA	
Drosophila melanogaster	50	nAcRalpha-30D	FBgn0032151	FBtr0079912,FBtr0079915	3	2	6	95	2L	9825635	9825653	AGGTTAAGTTCGGACTGAC		58	9815903	9825307	CGTTCCACTCCAAATTTAACC		59	NA	
Drosophila melanogaster	50	Nckx30C	FBgn0028704	FBtr0079926,FBtr0079928,FBtr0079927	2	3	3	120	2L	9733529	9742390	CAACGTGGTATCAATGACAC		59	9733428	9733446	CAATGATGTGCAGGATGAC		58	NA	
Drosophila melanogaster	50	CG9298	FBgn0032060	FBtr0079730	2	1	1	60	2L	8686354	8686372	GGTGGCCTTATATTCAACC		57	8686396	8686414	TAAAGGTCTTCTCGTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17834	FBgn0028394	FBtr0079686,FBtr0079689,FBtr0079687,FBtr0079688	2	4	4	72	2L	8536208	8536227	TGCTGGGAAGATTTCTACTG		59	8536262	8536905	GATTGTAGTTGGCGATGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	D12	FBgn0027490	FBtr0079707	2	1	1	60	2L	8434924	8434943	GGAAAGGAACACTACTGGAG		59	8434883	8434901	TATAACCATGAACCCTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acp29AB	FBgn0015583	FBtr0079716	1	1	1	60	2L	8392750	8392768	CATCCAGGATGAGATGGAG		58	8392708	8392726	CCAGTAGCTATTGTTGGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS13	FBgn0010265	FBtr0100541,FBtr0079724	2	2	2	260	2L	8364231	8364249	AGATGATGTCAAGGAGCAG		59	8363927	8363945	AGAATCAGACGGAACTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Btk29A	FBgn0003502	FBtr0079616,FBtr0112836,FBtr0079617	2	3	6	142	2L	8298083	8298102	CTTTCAGCTACTTCGATGTG		58	8284050	8284128	TTGGAACGGATAACCATCC		59	NA	
Drosophila melanogaster	50	CG8455	FBgn0031997	FBtr0079588,FBtr0079587	3	2	2	89	2L	8200026	8200113	TTATGCTGGCCACTATAACC		59	8200162	8200183	CACTCAGATAGCTATTGAAGAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	poe	FBgn0011230	FBtr0079545	1	1	1	80	2L	8056362	8056380	CTTATTCGTGTCCTAGCCG		59	8056245	8056319	CAAAGTGTCCTTGAAATGCT		58	NA	
Drosophila melanogaster	50	Pvf3	FBgn0085407	FBtr0112611	2	1	3	81	2L	7155493	7155513	CCTCTCATAAGGAACATTGAG		57	7107536	7118888	AAATGTTCTCCACATCATGG		58	NA	
Drosophila melanogaster	50	Rab30	FBgn0031882	FBtr0079426,FBtr0079428,FBtr0079427	3	3	3	60	2L	7032003	7032021	CAGGGTCTATTTCCACCTG		59	7031961	7031982	CGGTCTTAATCATGAAATCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11321	FBgn0031857	FBtr0079386	3	1	2	85	2L	6767316	6767334	ACCATCGAAATCCACACTG		59	6767032	6767267	GAGCATTAGCTTTGTGCAG		59	NA	
Drosophila melanogaster	50	CG9505	FBgn0031805	FBtr0079253	2	1	1	60	2L	6369130	6369148	GGGAAGGAACTGTATTCGT		58	6369172	6369190	GTAGACGTAGTTCATCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9135	FBgn0031769	FBtr0079186,FBtr0079185	1	2	2	128	2L	6052015	6052092	AAGAGAAGTACCGATATGTGG		59	6052182	6052200	ACTTGATGTCTTGGCTGAG		59	NA	
Drosophila melanogaster	50	CG13992	FBgn0031756	FBtr0079237	2	1	1	60	2L	5967363	5967381	GATCTACTGAATCGCAGCA		59	5967321	5967339	TACTTGGCCTAATCTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tim	FBgn0014396	FBtr0114526,FBtr0077564,FBtr0077567,FBtr0114527,FBtr0077566	1	5	8	80	2L	3500053	3500071	CAGAATTCCGGACTACTGG		59	3499754	3500009	TTGAGGTTGAGTTTGTCCA		58	NA	
Drosophila melanogaster	50	pgant4	FBgn0051956	FBtr0114524,FBtr0077523	3	2	2	60	2L	3473690	3473773	GTCAACTACAATTGGCTGC		59	3473795	3473815	TGGAGATCTTGGGATTAATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2991	FBgn0031474	FBtr0077627,FBtr0077625,FBtr0077626	3	3	3	121	2L	2866633	2866651	CCTCACAATTGCATCAGTC		58	2866736	2866826	GTTAACTGGAACCTTGGTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	aph-1	FBgn0031458	FBtr0077716	1	1	1	60	2L	2766967	2766985	CAATGAGCTTTACACGACC		58	2767009	2767027	GACTCCCGTAAGTATGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31689	FBgn0031449	FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706	1	4	4	81	2L	2738712	2738730	GAGACCTTCAACAACTGGT		59	2738773	2738878	AGAAGATGATATGGACTGGTG		58	NA	
Drosophila melanogaster	50	CG17301	FBgn0031442	FBtr0077697	2	1	1	60	2L	2653315	2653333	GACTACTGCATGATGTCGA		59	2653356	2653375	TGAAATCCGAGAACTTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	insv	FBgn0031434	FBtr0077746	3	1	1	60	2L	2576010	2576028	TTAGCAACGGCATAAAGAG		57	2575968	2575987	ATGAACTGTAGTGGAGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9886	FBgn0031428	FBtr0077770	2	1	1	69	2L	2422324	2422342	TTTACAAGAATCTCGCGCA		59	2422374	2422393	AGATCCATCACATTGGTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4272	FBgn0028485	FBtr0077763,FBtr0077762	2	2	2	60	2L	2368169	2368189	TCGTACGGAGAACTATATCAG		58	2368209	2368331	CCGTATAGGAAGTGATCTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4271	FBgn0031409	FBtr0077756	3	1	1	60	2L	2285202	2285220	TCTTATTTGCACGAAGCTC		58	2285243	2285262	CAGAAGTCAAACTTTGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34049	FBgn0054049	FBtr0100104	1	1	1	60	2L	2264640	2264659	CGAGAATATTATGCGTGTCC		58	2264599	2264620	CCAGAGTTTCAGTATTTGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eno	FBgn0000579	FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905	1	4	5	83	2L	1727657	1727675	TAAATTTGTGCAGATCCGC		58	1726602	1726620	GAGTCGTAGATTTGACGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5565	FBgn0031335	FBtr0077944	1	1	1	60	2L	1355744	1355762	ACCAAGAAGTGTTACTGCC		59	1355702	1355720	CTATCAAGGTTCCATCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdlc2	FBgn0026141	FBtr0077925,FBtr0077924	3	2	2	62	2L	1344750	1344769	GTTCGACAAGAAGTACAACC		58	1344794	1344812	ACATAGGATCCGAAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpp30	FBgn0022246	FBtr0078143	1	1	1	112	2L	252058	252076	ATAAGATCGAGCATCTGCG		59	251910	251983	ATTATGGGAGACACTCATCG		58	NA	
Drosophila melanogaster	50	CG11377	FBgn0031217	FBtr0078104	3	1	1	116	2L	103426	103526	AGTGTCATGATATTTCTGCG		58	103603	103623	CAATATGAGTAGAGCTCTGGA		58	NA	
Drosophila melanogaster	50	CG7889	FBgn0031003	FBtr0074675	1	1	1	247	X	19138595	19138613	ACTATTTGTACTCCCGACG		58	19138885	19138903	AGTGGGTGTTTGTTTACGT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG9981	FBgn0030746	FBtr0074304	1	1	1	80	X	16297169	16297188	TAAAGGAGGGATTGGAAGAC		58	16297037	16297128	CGTTCCTTATGACAGTTACTC		58	NA	
Drosophila melanogaster	50	CG15029	FBgn0030619	FBtr0073998	1	1	1	77	X	15079177	15079195	TCTGATTGTTGTCACCGAG		59	15080350	15080368	CCATCCTTGTCTGTATGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12398	FBgn0030596	FBtr0073976	3	1	1	105	X	14807144	14807216	ATATAGATTTCCTTCGCCAC		57	14807058	14807076	GAATCCTGTCTGAGATCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9512	FBgn0030593	FBtr0073979	2	1	1	111	X	14798009	14798027	ATTGGTTCACCTCAGATCC		58	14796896	14796914	GATCCTTGAGGTTCTCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mud	FBgn0002873	FBtr0073907,FBtr0073905,FBtr0073906	1	3	3	81	X	14142425	14142580	CCTAGCACATAACTATCCCG		59	14142623	14142642	GTAAACGTAAAGGCAATCCA		58	NA	
Drosophila melanogaster	50	CG10990	FBgn0030520	FBtr0112981,FBtr0073840	2	2	2	166	X	13644649	13644667	CAAGCAGCTAGATCTCACC		59	13644371	13644389	TCTTGTCGGTTAGGAATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12721	FBgn0030373	FBtr0073637	3	1	1	80	X	11966601	11966619	CAATCTAGATGGATGGCGA		58	11966539	11966557	TTTCTTACGCTTCTTTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1745	FBgn0030301	FBtr0073500,FBtr0073499	3	2	2	83	X	11349152	11349171	ACTATTAATCCGGTGGACAC		59	11349217	11349325	CTCCAGGAGGTCATTTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12796	FBgn0029909	FBtr0070973	1	1	1	75	X	6726261	6726279	TGACTCTGATCTCGATTGC		59	6726134	6726226	CGGGTCATGTATCTTCTATAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6067	FBgn0029828	FBtr0070864	1	1	1	271	X	5849896	5851092	AAATGCAAACGACCTACAC		58	5851396	5851414	TGACGGATGGTAGTATGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Parg	FBgn0023216	FBtr0070585	1	1	1	60	X	3564620	3564707	CCAGACATCAACTTTAACAGG		58	3564580	3564598	TAAGCTTCTCCAGAACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2694	FBgn0024991	FBtr0070482,FBtr0070483,FBtr0070481	2	3	3	194	X	2609466	2609565	TCTTACCAGAATCTGAACGA		58	2609720	2609740	GAAATCTTCTCCCTCATACTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG2652	FBgn0025838	FBtr0070505	1	1	1	63	X	2576417	2576435	TATTTGCGAGGAGATGCTC		59	2576372	2576390	ATTCTGTCTCATCATGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED18	FBgn0026873	FBtr0114454,FBtr0070308	1	2	2	113	X	1760521	1760607	AGCAAAGGGCTATATGTTCC		59	1760683	1760701	TAGCTTTGTGAGATTGGCT		58	NA	
Drosophila melanogaster	50	CG32809	FBgn0023531	FBtr0089815,FBtr0089814	3	2	2	83	X	1579765	1584245	CCACAAATCAAAGATTGGC		57	1579700	1579718	TCTGAAGAGTACATGCCTC		58	NA	
Drosophila melanogaster	50	eIF4E-7	FBgn0040368	FBtr0070252	3	1	1	60	X	1052915	1052933	CAACATATACGTGCTGGAG		57	1052873	1052892	AGTTGATCCCAGTTTATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40313	FBgn0058313	FBtr0113862,FBtr0113861	2	2	2	71	U	1924376	1924528	ACAATGAAACCAACGAAGAG		58	1924324	1924342	CTATCCATACTTCGGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40203	FBgn0058203	FBtr0113833	1	1	1	167	U	448296	452482	CAGCAAACTTGTGATGGTG		59	452613	452631	AACTCGATCTTAGTGCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF4G	FBgn0023213	FBtr0089243,FBtr0112904	2	2	2	85	4	941816	945718	CCTATCACTGATGAAACGGA		59	941750	941768	GGATGGGTCTGATTAGGTG		59	NA	
Drosophila melanogaster	50	Or98P	FBgn0067407	FBtr0085225	3	1	1	65	3R	23670943	23671077	TATATCGTGGCTAAGCTGG		58	23671104	23671124	CAATCGCTCAGAAATGTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PH4alphaSG2	FBgn0039779	FBtr0085653	2	1	2	129	3R	26316146	26316166	TAAAGCTGGATGACTATCTCG		59	26316257	26316330	AATGCACGGAACTCTTCTC		59	NA	
Drosophila melanogaster	50	CG31030	FBgn0051030	FBtr0110834,FBtr0085579	2	2	2	60	3R	25991690	25991765	AACATTGAAGTGGTGAGTC		57	25991648	25991666	CCAACAGAATCTCAGAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15517	FBgn0039718	FBtr0085515	2	1	1	80	3R	25729268	25729347	AAATAGTACCGTCTGCCTC		58	25729206	25729225	GAATTTCCATCCATTGTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11878	FBgn0039310	FBtr0084821	2	1	1	66	3R	21100570	21100588	AATATGCTGGTCGGATACC		58	21100618	21100692	GCATAGAATCCTCTCGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31108	FBgn0051108	FBtr0084802	3	1	1	95	3R	20941041	20941060	TAATTTACTCTGGACGGGTG		59	20940903	20940983	ATTTCGTAGGACCTAGGGA		58	NA	
Drosophila melanogaster	50	CG5871	FBgn0038870	FBtr0084050	3	1	1	92	3R	17046820	17046906	GATGTGCATAGTATGCATGTG		59	17046960	17046978	AGTCCTATCAGACTGAGCT		58	NA	
Drosophila melanogaster	50	CG4465	FBgn0038750	FBtr0083851	1	1	1	60	3R	15742696	15742770	TATTTGGTGACATAACAGCG		58	15742655	15742674	AAGCAGTCGTAAAGTATGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31088	FBgn0051088	FBtr0083241	2	1	1	84	3R	11776252	11776348	TTCAACAGCTTAGCTTATGC		58	11776134	11776152	CAGTCAAGCGATTTGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31183	FBgn0051183	FBtr0083187	2	1	1	99	3R	11688528	11688713	CGATAATTCACTTCCTGGGT		59	11688448	11688466	GATGTAGTGACGATAGCCG		59	NA	
Drosophila melanogaster	50	Su(var)3-9	FBgn0003600	FBtr0083129	3	1	3	299	3R	11087619	11088286	ACATCACAATCAAGCTGGA		59	11087338	11087356	TGTCCACATCATGTTCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	aur	FBgn0000147	FBtr0082483	1	1	1	249	3R	7789482	7789562	AACCAAGACTGAAACCCAG		59	7789775	7789793	ATACAGACGCAGGATATGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9839	FBgn0037633	FBtr0081934	3	1	1	99	3R	4630978	4630996	GGAATTGGAACAGCAAGAG		58	4630832	4630916	GTAGTCATCCATATCGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1427	FBgn0037347	FBtr0078702,FBtr0078703	1	2	2	82	3R	1427574	1427643	TATAGCCTGCAAACTCGTG		59	1427687	1427707	GTTGTGCCTCTAGTAAGTCTC		59	NA	
Drosophila melanogaster	50	AcCoAS	FBgn0012034	FBtr0078413,FBtr0100592,FBtr0078414	1	3	3	83	3L	21265831	21265849	TCTAAAGCACAACCTGAGC		59	21265711	21265729	TTGTAATACCAGAGCCAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11451	FBgn0037025	FBtr0078255	3	1	1	92	3L	20799466	20799545	GCTAACAAGAGAAGCAAATCG		59	20799598	20799617	AAAGTGATCTTCTCGAGACG		59	NA	
Drosophila melanogaster	50	CG7372	FBgn0036522	FBtr0075570	1	1	1	120	3L	15614596	15614614	CAGTTGGACAAGAGTGAGG		59	15614698	15614774	TTGAATTGGTGGGTTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14110	FBgn0036352	FBtr0075844	1	1	1	105	3L	13377974	13378045	GTTGTTCTCACCATTCAAGC		59	13378113	13378131	GCTCTTCATCTTTACGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32112	FBgn0052112	FBtr0075917,FBtr0075915,FBtr0075916	1	3	3	80	3L	12737069	12737147	TTTACAACTGGTGTCATGAG		57	12737190	12737208	TTCTCTGTACTGTCCATCC		57	NA	
Drosophila melanogaster	50	CG17153	FBgn0036248	FBtr0075992	2	1	1	271	3L	12111719	12111799	AACTAGACGATTCGTTGGAG		59	12112093	12112111	GGATTTGTGTCCAGTTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	tna	FBgn0026160	FBtr0076267,FBtr0112923,FBtr0076268	2	3	3	119	3L	10865268	10865287	AAACTATCAGCACAGTCCAG		59	10865369	10865454	ATTTCTTCGCTGTTGTCCA		59	NA	
Drosophila melanogaster	50	exo70	FBgn0035892	FBtr0076612	1	1	1	85	3L	8408752	8408828	CTACGAAATTTACTCTGGAGTG		58	8408874	8408892	TCAGCATAGCGTTGATCTC		59	NA	
Drosophila melanogaster	50	CG10144	FBgn0035704	FBtr0076986	1	1	1	123	3L	6486753	6486830	AGAGAATAAGCTTCCTGGT		57	6486648	6486666	ATGATGATACGCTCCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ero1L	FBgn0028736	FBtr0073216,FBtr0073217	1	2	2	139	3L	4173146	4173167	AAGATTCTCTACTCAGAGAAGC		59	4173267	4173346	TTGGATAGTCTGCCAAACG		59	NA	
Drosophila melanogaster	50	CG2469	FBgn0035205	FBtr0072668,FBtr0072669	3	2	2	73	3L	1307848	1307866	GTTGAGCATTCTCAAGCAG		59	1307902	1307982	TTTGTTTGTAGTAGGCAAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG2469	FBgn0035205	FBtr0072668,FBtr0072669	1	2	2	72	3L	1307848	1307866	GTTGAGCATTCTCAAGCAG		59	1307902	1307981	TTGTTTGTAGTAGGCAAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13912	FBgn0035186	FBtr0072625	2	1	1	138	3L	1189810	1189895	GTCACATACTGTGAGGGTC		59	1189996	1190015	GTACCTGTGATCGTATTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33376	FBgn0053376	FBtr0086368	1	1	1	62	2R	15645224	15645242	AATACATCGGTTCTCGTCC		59	15645180	15645198	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33378	FBgn0053378	FBtr0086370	1	1	1	62	2R	15644479	15644497	AATACATCGGTTCTCGTCC		59	15644435	15644453	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2811	FBgn0035082	FBtr0072412	3	1	1	73	2R	20827639	20827658	TACTAGAAGACTACCCGGAC		59	20827527	20827606	CTGAATGGTTTCATTCTGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ETH	FBgn0028738	FBtr0072426	3	1	1	124	2R	20682883	20682904	AGGATTCTTCCTAAAGATCACC		59	20682722	20682798	GAGGAGTAACAGAGCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pof	FBgn0035047	FBtr0072327,FBtr0072328	1	2	2	157	2R	20558156	20558174	AACTGCTCAGATTCCAGTG		59	20558292	20558374	GTATCTTCTAAGCTGTTCTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	nvy	FBgn0005636	FBtr0072267	1	1	1	209	2R	20177065	20177083	TTCTTCATGGAGATGAGCC		59	20177314	20177460	AACCTGATGGTGACTATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Rrp4	FBgn0034879	FBtr0072111	2	1	1	82	2R	19443487	19443505	GAGAACATCAAGTCCTCGG		59	19443423	19443441	ACATAGCGACTCTTAAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr59c	FBgn0041235	FBtr0071977	1	1	1	60	2R	18990145	18990226	CAGCCTTTGAGAACTTCCA		59	18990103	18990123	CCCATAACGTAGAATTCATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30275	FBgn0050275	FBtr0071874,FBtr0071873,FBtr0071875,FBtr0071876	3	4	4	107	2R	18599193	18599211	GATCCAGATGTCTATGCAG		57	18599282	18599362	ATGATGTAAGATCTTGCGG		57	NA	
Drosophila melanogaster	50	EfSec	FBgn0034627	FBtr0071608	3	1	1	80	2R	17273457	17273475	TACCTCAAGGAGAACAGCT		59	17273338	17273414	CACCTCCTATAATAGTGCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rx	FBgn0020617	FBtr0071518	1	1	1	74	2R	16811023	16811041	ATCTCAACCAGACCAACAG		59	16811079	16811271	TGTCATCTTGACCTTCGTC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	cora	FBgn0010434	FBtr0086508,FBtr0086506,FBtr0086507,FBtr0086509	3	4	4	126	2R	15123911	15123994	GTCTACCGCGATAAATTGC		59	15124084	15124102	CAATGGTGGATTCGTACTG		58	NA	
Drosophila melanogaster	50	CG10912	FBgn0034296	FBtr0086807	1	1	1	99	2R	13944224	13944242	ATTCCACCTTCGAATCCTG		59	13944051	13944161	GAATATGTCGGACCCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4945	FBgn0034137	FBtr0087100,FBtr0087099,FBtr0087098	1	3	3	131	2R	12454486	12455297	GAATTGGAGAAGATCCAGCT		59	12455391	12455409	TTTGGGTACAGCTTTCAGG		59	NA	
Drosophila melanogaster	50	CG30098	FBgn0050098	FBtr0087168	1	1	1	105	2R	12242442	12242522	TACCGCTTTGTTCTAACCG		59	12242298	12242316	TTCTAGTCTGTCCATCCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30084	FBgn0083919	FBtr0113484,FBtr0111048,FBtr0100388,FBtr0100387,FBtr0087315	3	5	6	81	2R	11652679	11652697	GTATCCTGAATAAGGCAGC		57	11651323	11652635	ATAAAGGGTCCTCTGATCTG		58	NA	
Drosophila melanogaster	50	CG6357	FBgn0033875	FBtr0087638	3	1	1	139	2R	9728355	9728376	CTGATCATACTATTGAGGAACG		58	9728476	9728552	CGGCTTAAAGTCAATCAGG		58	NA	
Drosophila melanogaster	50	Cyp6g2	FBgn0033696	FBtr0088009	2	1	1	118	2R	8076681	8076699	CTTCTGGGAGGGATTACTC		58	8076530	8076599	CGGTTGAGGAAAGTACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13185	FBgn0033661	FBtr0113071,FBtr0113072	1	2	2	81	2R	7764022	7764041	ACCTCTAAACGTAACTTGCA		59	7763895	7763978	GCGTTGAATCTGTTGATCC		59	NA	
Drosophila melanogaster	50	CG34229	FBgn0085258	FBtr0112422	2	1	1	173	2R	7729258	7729360	TTTGAAGCAGTTTATGCTGC		59	7729496	7729514	TGAAGGAGCATCTTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp47F	FBgn0033629	FBtr0088152	3	1	2	237	2R	7265746	7266039	TAACGACATGCGAATCTCC		59	7265468	7265486	CTCCACAATGAAGATGACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30016	FBgn0050016	FBtr0088241	2	1	1	75	2R	6762775	6762848	TATTGGATACTTCGGTGGG		58	6762718	6762736	CATTCCTGAATCTCGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33757	FBgn0053757	FBtr0091758	3	1	1	83	2R	5342087	5342106	AGAAACAATGTGATCGTGAG		58	5341970	5342041	TTTCTTAAACGGGCAAGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11196	FBgn0033248	FBtr0088870	1	1	1	128	2R	3882127	3882145	AGTTAGTTCCAAGATGGCC		59	3881847	3882035	TAGTTACGTCGCTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12824	FBgn0033222	FBtr0113050	2	1	2	138	2R	3678003	3678082	GAATTATCCTACGCATTTGGAG		59	3678236	3678255	TTAAGTAGAGGAACATGGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17493	FBgn0040010	FBtr0111255	2	1	1	60	2L	22443163	22443183	CTCACTCGTATAGTCTATGCG		59	22443204	22443282	TGGGTAATTTCAGATGTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spn3	FBgn0028986	FBtr0081450	2	1	1	119	2L	20837006	20837082	GTTCTTATAGCGATGGGCA		59	20836905	20836923	ATTAACCTCTAGGAACGCC		58	NA	
Drosophila melanogaster	50	CG6453	FBgn0032643	FBtr0080998	3	1	1	155	2L	17483290	17483308	TAGATGCTTTCGTAACGCT		59	17483088	17483171	GTTCTTCGCTTAGCTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15293	FBgn0028526	FBtr0080603	3	1	1	199	2L	14109137	14109209	CTTCTGAAGCTGAAGGGAG		59	14108956	14108975	CTGAAATCCGGACCTAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15483	FBgn0032457	FBtr0080402	3	1	1	141	2L	12761228	12761246	TATCCCGTCAATATGGGAC		58	12760992	12761123	GAATTCCAATCACTTGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pdm2	FBgn0004394	FBtr0080392	1	1	2	138	2L	12673635	12680782	CCTGCCAACAAAGTTATGC		59	12684581	12684599	TCAGATTCTGTGGCATCTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG14072	FBgn0032318	FBtr0080145	1	1	1	69	2L	10937393	10937411	TCTACAATATGCGGTCGAG		58	10937444	10937520	TTGAGACACATTCGATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nup107	FBgn0027868	FBtr0080121	1	1	1	182	2L	10733695	10733777	CAAGCAAACCATCGAACTC		59	10733531	10733549	ACTTCGTTCAGAAACAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11289	FBgn0031887	FBtr0079404	2	1	1	64	2L	7068583	7068601	ATGTGGGAGAAGTTCATGG		59	7068629	7068698	AAGTGCAAACGGTAGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lam	FBgn0002525	FBtr0079100	3	1	1	96	2L	5544647	5544667	GTCAAGAGATAGACCTTCTCG		59	5544725	5544808	ACCTTGATGTCCATAAGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3714	FBgn0031589	FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077481,FBtr0077482,FBtr0077479	3	6	6	107	2L	4195813	4195831	GTTCTTTCGCAACAATCCA		58	4195656	4195742	TATTCGATATCGCTCTGGG		58	NA	
Drosophila melanogaster	50	CG10039	FBgn0031581	FBtr0077507	3	1	1	60	2L	4007892	4008751	ACTACATTTGTACCATGCG		57	4008775	4008793	ATGGATTCGCGTAGTAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Shaw	FBgn0003386	FBtr0089274,FBtr0089275	2	2	2	80	2L	3721575	3721651	GCTCAACTATTACAGAACTGGA		59	3721691	3721710	CAGAACTCCAATTCCTCCTC		59	NA	
Drosophila melanogaster	50	Ptpa	FBgn0016698	FBtr0077589	1	1	1	148	2L	3377673	3377691	TTCAATCGGTACCTTGAGC		59	3377803	3377877	TCAAAGGGACTCTTAACCG		58	NA	
Drosophila melanogaster	50	tRNA:N5:84F	FBgn0051583	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG18139	FBgn0038522	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG17162	FBgn0039944	FBtr0113724,FBtr0113726,FBtr0113723,FBtr0113725,FBtr0113722	1	5	5	60	XHet	67548	67566	TACTCACTTAAATCGCCCA		58	66298	66316	TTATAGACGTTTGATGCGG		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG14619	FBgn0031187	FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350	2	5	5	123	X	21868683	21868703	TTTATGAACTCGGTCATCCAG		59	21868788	21868866	GTTTGGCAAATTCGTGGAG		59	NA	
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089402	2	1	13	176	X	20101685	20103202	ATGAATTCACAGTGCTTGC		59	20101527	20101548	CTTCAGTCTCCTTCTTGATCTC		59	NA	
Drosophila melanogaster	50	CG32626	FBgn0052626	FBtr0073830,FBtr0073833,FBtr0073832,FBtr0073831	3	4	4	81	X	13726180	13726259	GATCATAAAGGAAGTGGCCT		59	13726118	13726136	CGACTTGCCATAGATGGAG		59	NA	
Drosophila melanogaster	50	CG1552	FBgn0030258	FBtr0073397,FBtr0073396	1	2	2	155	X	10947114	10947133	AGAACAATCACATAATGCCC		58	10946802	10946820	AATAAACCGGACAGCAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11265	FBgn0030049	FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964	1	4	4	141	X	8459066	8459084	ATGATATCGGTCGAAGCAG		59	8459189	8459419	ATGATTCGACCCAGTATCG		58	NA	
Drosophila melanogaster	50	CG3719	FBgn0024986	FBtr0070233	3	1	1	95	X	1274174	1274192	CCACTACGAGTTCGATCAG		59	1273332	1273350	GGCGTGAGTATCTTACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41529	FBgn0085671	FBtr0114118,FBtr0114119	1	2	2	64	U	3832285	3832303	CAATTGGTTTGACCTGCTC		59	3832331	3832349	GCTTCTGGTTGAGATTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41490	FBgn0085651	FBtr0114095	1	1	1	63	U	1766227	1766245	TAGAATTGGCCCATGAAGG		59	1766272	1766290	ACCTTGACTCTCAATCGAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211	1	4	7	180	4	1080191	1080209	CAACACAACCTCTCAACAG		58	1079962	1080047	TGAGAAGAGTCCATTGCAG		59	NA	
Drosophila melanogaster	50	CG31184	FBgn0051184	FBtr0084505	1	1	1	68	3R	19822378	19822396	AGGTGTACGTAAAGATGCG		59	19822488	19822506	TCAAATGCTGATCAAAGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5191	FBgn0038803	FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905	2	5	5	102	3R	16396363	16396821	TGTCGACAGGTAAATCCTC		58	16396887	16396905	TAATGCCCATCGCTATCAC		59	NA	InUTR
Drosophila melanogaster	50	CG7708	FBgn0038641	FBtr0083669,FBtr0083668	1	2	2	102	3R	14509015	14509033	TTCTGTCCTATGTTGCAGC		59	14509228	14509247	TTGTAATCTGTCTCGTTCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31517	FBgn0047199	FBtr0082864	2	1	1	147	3R	9774636	9774654	CAAATGCCATCAGAAATCG		57	9774849	9774867	TCTTTGGTCATCTCGACAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG10126	FBgn0038088	FBtr0082686,FBtr0082687	2	2	2	61	3R	8681482	8681557	TGGATGGAAAGATAACCCG		59	8681439	8681457	AATTGAGGCACTAATGGTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082456	3	1	6	160	3R	7418218	7418236	TTTGGTCAGAACACAGAGG		59	7417722	7418096	ATATTGCGGAAGACTGATCTC		59	NA	
Drosophila melanogaster	50	SelR	FBgn0037847	FBtr0082296,FBtr0082294,FBtr0082292	1	3	6	165	3R	6692389	6692407	AACAAACACTACGAGAAGG		57	6689539	6692261	GTATACGTTCTGGTATGCTG		57	NA	
Drosophila melanogaster	50	Fmr1	FBgn0028734	FBtr0082200,FBtr0082198,FBtr0082199	2	3	5	192	3R	5930726	5930802	TTTCGAATCAAGATCGCTG		58	5930470	5930488	GAAGCTGCTGATCAATCTC		58	NA	
Drosophila melanogaster	50	neur	FBgn0002932	FBtr0082001,FBtr0082002,FBtr0082004,FBtr0082003	1	4	4	224	3R	4847924	4847942	GATATAAACGGCCAACTCG		58	4847659	4847677	ATTCTCGTAGCAGATGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33324	FBgn0053324	FBtr0081727	3	1	1	77	3R	2272573	2272591	TCTTTCCGATCACATGAGC		59	2272632	2272650	GTCTTAAGGGAGCTACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1021	FBgn0037443	FBtr0081731,FBtr0081732	1	2	2	81	3R	2217072	2217090	CGATTGAACACGAAGATCC		58	2216930	2217030	GATACTCGTTGACATTATCGTC		58	NA	
Drosophila melanogaster	50	Snm1	FBgn0037338	FBtr0078688	2	1	1	86	3R	1382370	1382388	TGCTAACAGAAGATCGCAG		59	1382492	1382513	CAGTAAAGTAATCGACTAGGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6838	FBgn0037182	FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186	1	4	4	88	3L	22709292	22709405	TCAGTAAGGATCCAAACCC		58	22709222	22709240	ATTAAGCAGATTCACGCTG		58	NA	
Drosophila melanogaster	50	eRF1	FBgn0036974	FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177	3	6	6	81	3L	20344765	20344786	TGGAGATTATCACGGATAAGTC		59	20344828	20345922	TTGTAGCGTAAGATACCGC		59	NA	
Drosophila melanogaster	50	tra	FBgn0003741	FBtr0075364,FBtr0100244	1	2	2	136	3L	16583384	16583459	ATTTCTACGGGATGTCTGG		58	16583266	16583284	GTTTCTGTAGCCAAATCGC		59	NA	InUTR
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100044,FBtr0100043	2	2	6	100	3L	14219494	14223284	CAATGAGCAACTGGAACTG		59	14223348	14223366	CTGCATATTCGGTCTTGGT		59	NA	
Drosophila melanogaster	50	CG11006	FBgn0027534	FBtr0075927,FBtr0075929,FBtr0114506,FBtr0075928	2	4	4	85	3L	12803756	12803840	TGATGAAGATCGATGAGAAGG		59	12803887	12803905	CAATGATAGAACGCCTGTG		58	NA	
Drosophila melanogaster	50	PGRP-LD	FBgn0035635	FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577	3	4	4	107	3L	5775936	5776021	TGCATAAGCTGGAAAGGTC		59	5776092	5776110	GATACTGGCTCCGATAGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG17723	FBgn0035432	FBtr0073057,FBtr0073055,FBtr0073058,FBtr0073054,FBtr0073056	1	5	5	85	3L	3312395	3312526	CATATTAGGTGCCGTAACCT		59	3312574	3312592	GTAGAGTGGATACCCTCGT		59	NA	
Drosophila melanogaster	50	CG34206	FBgn0085235	FBtr0112399	3	1	1	60	2R	18051694	18051714	GTAATCATCCAGAACAGTGGA		59	18051654	18051672	GGTCTTGGTAAACTCTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GM130	FBgn0034697	FBtr0071789,FBtr0071790	2	2	2	131	2R	18013744	18013762	TAAAGAGGCCAGTCAAGTG		59	18013576	18013594	ATCTTCAGCTGGAATTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15093	FBgn0034390	FBtr0086638	2	1	3	260	2R	14664054	14664072	CTTTGTGATCACCATGCTG		59	14663588	14663606	GCACAGGGTTGTAGATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	3	8	8	99	2R	14032395	14032483	AGGAAAGAATTCTGAGAAGC		57	14032544	14032563	CTCAATCATCGGATACAGAC		57	NA	
Drosophila melanogaster	50	CG12699	FBgn0046294	FBtr0086995	3	1	1	103	2R	13134409	13134429	CAGAATCTGATGCAGAATCAG		58	13134326	13134344	TATATCCACACGGTTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Psi	FBgn0014870	FBtr0087073,FBtr0087072	3	2	3	178	2R	12752526	12752604	AGAATAAGCAGAACGGATCTG		59	12752368	12752386	ATACTGCGAATACTGTGCA		59	NA	
Drosophila melanogaster	50	igl	FBgn0013467	FBtr0087361,FBtr0087362	2	2	2	160	2R	11068192	11068210	CTGAATTCGATCCCAACGA		59	11076379	11076397	ATCTATGTCCAACTCCTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp6a21	FBgn0033981	FBtr0087456	2	1	1	60	2R	10773288	10773309	GAAGGATTTGGTCTATCTAGAC		57	10773196	10773214	GAGAACGGTGTACAATCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13335	FBgn0033857	FBtr0087679	3	1	2	84	2R	9459466	9459548	GTGTAACCAAGGTGATTGG		58	9459400	9459418	CATTCCGAACTCTTCAGGT		59	NA	
Drosophila melanogaster	50	TppII	FBgn0020370	FBtr0087775,FBtr0087774	3	2	2	92	2R	9040864	9040942	CCAAGATAAAGACCAACATGG		58	9040792	9040810	CTAATACAGCCAGCTTTGC		58	NA	
Drosophila melanogaster	50	Mef2	FBgn0011656	FBtr0088443,FBtr0088447	3	2	6	107	2R	5805515	5805533	AATCTTAGCGTACTGAGCC		59	5805020	5805445	TTCATACTTATCGTGCCCTG		59	NA	
Drosophila melanogaster	50	sec31	FBgn0033339	FBtr0088643	1	1	2	151	2R	4782954	4782972	AAGGAGGAAATGCTGAACC		59	4783145	4783469	TTATCTTGCGTCTGATGGG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111060	2	1	60	127	2R	3219882	3226922	ATCTCGTAGTGAACGTACC		58	3219773	3219792	TTTCTTCCATGTAACTTGGG		57	NA	
Drosophila melanogaster	50	Pld	FBgn0033075	FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997	3	6	6	81	2R	2141752	2142360	ACATTCAGGGTTACTTGGT		58	2142405	2142423	CCCTCCTTACTAGTTCCAG		58	NA	
Drosophila melanogaster	50	cul-2	FBgn0032956	FBtr0085900,FBtr0085899	1	2	2	87	2L	21662617	21662694	GCCTTAATACAAGAGGTTCTC		58	21662743	21662761	CAATTAATGACTCCACGCA		58	NA	
Drosophila melanogaster	50	CG9264	FBgn0032911	FBtr0081463	2	1	2	81	2L	21080465	21080483	ATCCTATTCAGTGGCTGTG		59	21080526	21080609	TAGGTATCAGCAGAATGAGTC		58	NA	
Drosophila melanogaster	50	CG31788	FBgn0051788	FBtr0081056	2	1	1	64	2L	18257751	18257769	TCTTTCGATTGGACCTTGG		59	18257705	18257724	CTTACTACACGCTGTTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15270	FBgn0028879	FBtr0080703,FBtr0080702	3	2	2	82	2L	15091215	15091301	GAGAAACTTAAAGAGCAACTGG		59	15091343	15091362	AAATAGGGAATCGCAGACTC		59	NA	
Drosophila melanogaster	50	nompC	FBgn0016920	FBtr0079074,FBtr0079075	1	2	3	110	2L	5358663	5358681	ATGACACCACTACACTTGG		59	5358754	5358834	ATTATAGCCGTTCTCGATGG		59	NA	
Drosophila melanogaster	50	CG3557	FBgn0031423	FBtr0077790	3	1	1	61	2L	2385091	2385110	ATAAGGGAACAGATAAGCCG		59	2385049	2385067	TCTTTCAGCTGTTGACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8326	FBgn0030851	FBtr0074486	3	1	1	60	X	17522778	17522796	CAAGAGGTTGATACCGAGG		59	17522736	17522756	CAGCATCCTGTTTGAATTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085631,FBtr0085634	2	4	5	237	3R	26211978	26212058	GATCTGATCAATGTGCCGA		59	26211759	26211777	TCTTCTTGAGAGTGGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nf1	FBgn0015269	FBtr0100113,FBtr0084953,FBtr0084952	1	3	3	81	3R	21814617	21814635	GAACATATTCTACCAGGCC		57	21814679	21814751	TTCTCCAATCTTGTATCGTC		57	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0110937,FBtr0112915	2	12	12	139	3R	17037303	17037478	TGATGTGATTAATCTCGCC		57	17037581	17037599	GTTCCATGATCGTGTAGAG		57	NA	
Drosophila melanogaster	50	CG31406	FBgn0051406	FBtr0082235	1	1	2	257	3R	6174718	6174736	AATCTTCGAGGACCAAAGG		59	6175444	6175518	CATTATCGTTTGTCGCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	cp309	FBgn0086690	FBtr0099993,FBtr0099992	2	2	2	83	3L	15062921	15063040	CAGACAATGGAAACTTCTAAGG		58	15062859	15062877	GTAAGGGACAATAAAGCCG		58	NA	
Drosophila melanogaster	50	CG14961	FBgn0035439	FBtr0073069	2	1	1	61	3L	3330611	3330629	GGTACATCCAGTCCTACCA		59	3330654	3330728	ATTCGATGACTCGTAGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13568	FBgn0034965	FBtr0113115,FBtr0113116	2	2	2	93	2R	19941629	19941647	CCTCTCAGGTATTCTTCGT		58	19941485	19941572	GACTGTTGACGTACATCTC		57	NA	
Drosophila melanogaster	50	CG30269	FBgn0050269	FBtr0071867	3	1	1	73	2R	18555802	18556154	TGATATTATGCCTGTTCCAG		57	18556190	18556208	ATTGGTGTTCATGCAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GM130	FBgn0034697	FBtr0071789,FBtr0071790	1	2	2	71	2R	18013195	18013213	AGAACGTGGAACTACAACG		59	18013083	18013160	TTGCCTCATAATGCCTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ap	FBgn0000099	FBtr0086059,FBtr0086058	2	2	2	100	2R	1595875	1596126	CGCTAACATAGATCTCAACAC		58	1595795	1595813	GATGCTTAAACGAGGTTCG		58	NA	
Drosophila melanogaster	50	CG15483	FBgn0032457	FBtr0080402	2	1	1	115	2L	12760987	12761118	AGTGATTGGAATTCCAGGA		58	12760890	12760908	ACATCTCTTGCAACTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pdm2	FBgn0004394	FBtr0080393,FBtr0080392	2	2	2	109	2L	12680828	12684543	TATCAGACTGCGGAAAGAG		58	12684616	12684634	CTCAGAGTCTAGTTCCCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	KH1	FBgn0086130	FBtr0078009	3	1	1	60	2L	812444	812464	TCCTAGATGATACGTTCACAG		58	812486	812569	AAGTGGAAGGGAAATCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33268	FBgn0036177	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:G3:56EFb	FBgn0011870	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Ppr-Y	FBgn0046697	FBtr0113889	2	1	1	129	YHet	162097	191734	TGCATGAATCTATACAGGAGTC		59	191903	191921	CGGAGTTCAATAGGAACGT		59	NA	
Drosophila melanogaster	50	CG17162	FBgn0039944	FBtr0113724,FBtr0113726,FBtr0113723,FBtr0113725,FBtr0113722	2	5	5	60	XHet	66271	66289	GTGGATGTAGAGGACAGGA		59	66229	66247	GCCGATGAAATATTCCCTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41474	FBgn0084034	FBtr0111203	1	1	1	80	X	22150773	22151456	CAATACATTGGTATTGTGCCTG		59	22151497	22151515	ATGCCGAAATGTTGAACAG		59	NA	
Drosophila melanogaster	50	CG12576	FBgn0031190	FBtr0077366,FBtr0077365	2	2	2	63	X	21879091	21879109	TATATCCGGATCAACGCTG		59	21879046	21879065	GTACTTGGTGGAGACTAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sol	FBgn0003464	FBtr0089677,FBtr0089679	3	2	4	195	X	21223906	21223925	AGCGGAAGTACAACTTTACC		59	21224083	21225131	GATCATGCATATGCTGCTG		59	NA	InUTR
Drosophila melanogaster	50	sol	FBgn0003464	FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676	2	4	4	83	X	21228148	21228166	AGAGCTACAATGTGGTGTC		59	21228210	21228300	GAACGATGATTACTTGTCTCTG		58	NA	
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089405	2	1	13	67	X	20105884	20105902	TGGTCTACACAAAGCAGAC		59	20101678	20105853	ATCAAATGCAAGCACATCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG9577	FBgn0031092	FBtr0070007	3	1	1	124	X	20061837	20061921	TTGGATCACATTCTCCTGC		59	20062008	20062027	TTACAGGTTACCGATCACAG		59	NA	InUTR
Drosophila melanogaster	50	CG32528	FBgn0052528	FBtr0074793	1	1	1	136	X	19640676	19640694	GAAGAAGGTCCAAGAGGAG		58	19640873	19640891	GATCACTGATGGACTGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Zw	FBgn0004057	FBtr0074749,FBtr0074748	2	2	2	60	X	19565027	19565045	CAACATCAAGCAGATCTGC		59	19565154	19565172	AGGCTTCTCGATAATCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7990	FBgn0030997	FBtr0074694,FBtr0074695	1	2	2	208	X	19093478	19095497	GATCAACACAACGATTAGCTC		59	19092799	19093309	GTATAATGTTGTAGACGCGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Obp18a	FBgn0030985	FBtr0074701	2	1	1	61	X	19029478	19029496	TCCATACCTGATTCTCCAG		57	19029435	19029453	ATTACGAGGCGATAGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7101	FBgn0030963	FBtr0074639	3	1	1	60	X	18725712	18725731	TCACCGATCACATAAAGACG		59	18725752	18725772	CAGAATTCACAGGTGTAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CCKLR-17D1	FBgn0030950	FBtr0113001	2	1	3	82	X	18603482	18607398	ACTACTATGATTACGGCCA		57	18603418	18603436	GTATAGATGCCTCCTTCCT		57	NA	
Drosophila melanogaster	50	CG6123	FBgn0030913	FBtr0074578	2	1	1	160	X	18249961	18249979	AATCGAGTGAATTTCCAGC		58	18224540	18248912	TAAAGTGTCCTTGTTGACAC		57	NA	InUTR
Drosophila melanogaster	50	RSG7	FBgn0024941	FBtr0074350	3	1	1	83	X	16736544	16736626	GCACCTTCTACAGATTCCA		58	16736479	16736497	AAAGGTAGACGGCATAGTC		58	NA	
Drosophila melanogaster	50	CG9132	FBgn0030791	FBtr0074354,FBtr0074353	3	2	2	283	X	16693215	16693233	GATCAACATGCGGATAACG		59	16692662	16692681	ATATCTAGAACTGCACCCAG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Rbp2	FBgn0010256	FBtr0074281,FBtr0074280,FBtr0074279	2	3	3	258	X	16344027	16344045	CTTTGAGGTGAAGTACGTG		58	16344401	16344419	CTTCTGGAAACCGTCTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(1)G0022	FBgn0027329	FBtr0074086	2	1	1	61	X	15642280	15642301	GAACAAGTACACTTTCGTTGAG		59	15642323	15642341	CCTTGATCAGGATCGTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32594	FBgn0052594	FBtr0073956,FBtr0073957	1	2	2	103	X	14925094	14925222	GAATAAATCTCCGCATCGAG		58	14925288	14925306	CATGATCATGTCGATGTGG		58	NA	
Drosophila melanogaster	50	CG14411	FBgn0030582	FBtr0073947,FBtr0073946	3	2	2	61	X	14729739	14729757	AGCTGTACGACATTCTGAG		59	14729782	14729800	GTCCAGAAAGGATGAGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14411	FBgn0030582	FBtr0073947,FBtr0073946	2	2	2	60	X	14729742	14729760	TGTACGACATTCTGAGCAG		59	14729784	14729802	TTGTCCAGAAAGGATGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5334	FBgn0030577	FBtr0073935	3	1	1	60	X	14669935	14669953	CCCTTTGGAACAAATTGCT		58	14669977	14669995	GTTGAATGCGGTTATCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9411	FBgn0030569	FBtr0073916	3	1	1	207	X	14368849	14368867	CCTTTGGAACGCAATACAG		59	14368585	14368603	GAATACGAATCATCCAGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG1434	FBgn0030554	FBtr0073903	1	1	1	100	X	14133631	14133717	TCCCAGTGATAATCATCTGC		59	14133780	14133798	ACAATTTGTCACACTGCTG		58	NA	
Drosophila melanogaster	50	CG32628	FBgn0052628	FBtr0113442	2	1	2	175	X	13609630	13609791	TATCGTCGTAAGAAGTCCAC		58	13609929	13609947	TAACCATTATGTCCGGACG		59	NA	
Drosophila melanogaster	50	IP3K2	FBgn0085388	FBtr0112575,FBtr0112573,FBtr0112574	3	3	3	80	X	13221585	13221603	TATGTGCCCGTTTACAAGG		59	13221714	13221733	ATAGTCACTGAGCAGATCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4318	FBgn0030455	FBtr0073742	2	1	1	60	X	13048638	13048659	GTCAGTGAGATGAATTATGAGG		58	13048599	13048618	GCTCAATCAGTTCAACATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4404	FBgn0030432	FBtr0073694	3	1	1	60	X	12798361	12798379	GCAGAATCGAAAGTTTCGA		58	12798319	12798340	CTTGTTATCCAGAATATCGTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32651	FBgn0052651	FBtr0073672	3	1	1	60	X	12300909	12300933	GTATGGATCTAACCTATCCTTAACC		59	12300873	12300892	CAGAATTTCACTCAGTTGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	regucalcin	FBgn0030362	FBtr0073576,FBtr0073578,FBtr0073577,FBtr0073575	3	4	4	99	X	11910742	11910817	AGGTTAATCCCAACACTGG		59	11910880	11910898	TACAGGATGTCCAAGTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0100303,FBtr0100302	3	2	10	159	X	11856301	11856320	ATTCACCGGAATGTTTAGTG		58	11848300	11856054	GTTGATTGAGTTCGAATCCC		58	NA	
Drosophila melanogaster	50	CG2444	FBgn0030326	FBtr0073531	2	1	1	60	X	11598590	11598609	ACTTTGTGAACATCAATCGC		59	11598549	11598568	TTGTCGCAATTGTATTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PhKgamma	FBgn0011754	FBtr0090001,FBtr0090000	3	2	3	82	X	11592561	11592579	TCTAGTCGTTGATCCTTCG		58	11592624	11594666	CACCCATTAACACCATTTGG		59	NA	
Drosophila melanogaster	50	CG11160	FBgn0030257	FBtr0073390	3	1	2	81	X	10942566	10942584	TCGTATCAACAACGACCTG		59	10942627	10942987	GACATCCCGATATCTAAGGAG		58	NA	
Drosophila melanogaster	50	Gr8a	FBgn0030108	FBtr0071311	3	1	1	121	X	9122271	9122290	TTCATATACGCTTCGCAGAG		59	9122374	9122451	AAGTTCTGAATCTGCAGGG		59	NA	
Drosophila melanogaster	50	CG9034	FBgn0040931	FBtr0071343	3	1	1	112	X	9053728	9053746	AACTACTATGCCAAGGACG		59	9053634	9053652	CTCCTCTAGTCATCCTCGT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12125	FBgn0030037	FBtr0071246	1	1	1	133	X	8329150	8329171	CTTCTACGATATCTGTTTGGAC		58	8328974	8329056	CTGTTGTTAATGCCGTCTC		58	NA	
Drosophila melanogaster	50	CG10958	FBgn0030004	FBtr0071153	2	1	1	60	X	8028134	8028153	GCTAAAGATTCTTGAACCGT		58	8028175	8028194	TATATTGTCGATGCGTACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15324	FBgn0029966	FBtr0071087	1	1	1	60	X	7769355	7769375	ACACTTACTATCCCTATGGAC		58	7769397	7769415	GCAGTATAGTAGACAGGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4607	FBgn0029932	FBtr0071014,FBtr0071013	2	2	2	60	X	6964929	6964949	GAAATCCCTCAGATACTTCCG		59	6965439	6965457	GAATTCCGGTACGTAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33692	FBgn0064121	FBtr0091674,FBtr0091675,FBtr0091676	1	3	3	125	X	6773677	6773695	ATTTACGGCACCATATCAG		57	6773784	6773802	TGACCATGTGTATGATGGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	iav	FBgn0086693	FBtr0070969	3	1	1	108	X	6710426	6710504	TGGGTGATTATAACTATCCCG		58	6710574	6710592	AACATGTTGAGCAACAGGA		59	NA	
Drosophila melanogaster	50	kdn	FBgn0086133	FBtr0070906,FBtr0070907	2	2	2	153	X	6253882	6253900	GTACATCTGGAAGACCCTC		58	6254129	6254147	GTAGATCTTCGACACCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	kdn	FBgn0086133	FBtr0070906,FBtr0070907	3	2	2	153	X	6253881	6253899	AGTACATCTGGAAGACCCT		59	6254128	6254146	TAGATCTTCGACACCAGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32750	FBgn0052750	FBtr0070881	1	1	1	60	X	6090376	6090397	GACTGATGATAATTCCGTTGAG		58	6090337	6090356	TGGCCTATATTCCACTACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rux	FBgn0003302	FBtr0070889	1	1	1	60	X	5930277	5930298	GTGCGTCGTACTTTATTTACAG		59	5930238	5930256	GTATGAAATCGGCATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	XRCC1	FBgn0026751	FBtr0070763	3	1	1	141	X	5225461	5225479	TCAGTTACTCAAGGGTGTG		58	5225644	5225724	GAATGCGCATATCAGATGG		58	NA	
Drosophila melanogaster	50	CG32774	FBgn0052774	FBtr0070662	2	1	1	60	X	4138356	4138374	CTTTGACGATTTCAGCGAG		59	4138314	4138332	TTCCAATACGTTGTTCGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GlcAT-I	FBgn0066114	FBtr0070644	3	1	1	123	X	4026119	4026137	GCAAAGAGGCTATCAGGAG		59	4026224	4026242	TAGCTTGGTCTTCTCAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32778	FBgn0052778	FBtr0070622	3	1	1	110	X	3978728	3978832	GATCCCAGTGGTTACTCAC		59	3978904	3978924	CGGATTACTGCATTGATAAGC		59	NA	
Drosophila melanogaster	50	Vap-33-1	FBgn0029687	FBtr0070619,FBtr0070618,FBtr0070616,FBtr0070617	3	4	4	105	X	3846162	3846180	GAAACGTCTGAGAGTCTGG		59	3846246	3846812	GTGTGATTTGATCCTTCAAGTG		59	NA	
Drosophila melanogaster	50	CG32783	FBgn0052783	FBtr0070615	1	1	1	60	X	3841558	3841576	TAATTTAGAACTGGCGGTG		57	3841689	3841707	TTGGTTCAAGATCCTCTGG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG34336	FBgn0085365	FBtr0112538	3	1	1	111	X	3763592	3763610	TAGGGATGATCGATTCCAG		57	3763035	3763053	AGTATTCCAGCTTGTAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12206	FBgn0029662	FBtr0070528,FBtr0070527	3	2	3	102	X	3365982	3366000	AATTAAATCCGCCAAGGGA		59	3360657	3365919	CATATAGTTCTTGACATTGGGC		59	NA	
Drosophila melanogaster	50	Scgdelta	FBgn0025391	FBtr0070277	2	1	1	80	X	1643777	1643796	GCGATAATTATGGACATGCT		58	1642313	1643736	GTTACGTGATGACTCTATGGA		59	NA	
Drosophila melanogaster	50	CG11403	FBgn0026876	FBtr0070245	2	1	1	60	X	1131810	1131828	AAGTTTGCTCATAGAGGCA		58	1131710	1131731	GATTCCGAAGAATCATTGAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	sdk	FBgn0021764	FBtr0070132,FBtr0070131,FBtr0070133,FBtr0070130	2	4	4	60	X	622716	622734	ATGCCGGATCCATATTCAG		59	622758	624284	TCAAAGATGCCCATGTAGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG4293	FBgn0024983	FBtr0100476	3	1	4	178	X	423559	423678	CGGTAAGCTGAAACATGAC		58	423341	423359	CGTGTAAACCAGGTAAACG		58	NA	InUTR
Drosophila melanogaster	50	CG12470	FBgn0040371	FBtr0070069	1	1	1	60	X	202610	202628	ACCTGCGATGTTAATAGGT		58	202652	202670	AAAGAAATCCAGCAGTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40574	FBgn0085749	FBtr0114199	1	1	1	68	U	9836543	9836561	ACTATAGGTAGGCAGTGGT		58	9836592	9836611	TGCCAAGATCATATGAACAC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41423	FBgn0085644	FBtr0114088	1	1	1	88	U	2928081	2928102	CATGAAGGACTTTATGTGTCTC		58	2928535	2928554	GGATACTTTGCCTTGTACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40108	FBgn0058108	FBtr0113794	1	1	1	63	U	1340751	1340770	CAAATGGTACTAGTTCCGTG		58	1340796	1340814	GACGTGGTTACATCAAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41520	FBgn0085665	FBtr0114111	1	1	2	83	U	1352550	1352569	TTACAAATTCGTGGTACGAC		58	1352615	1352685	TTGAATAACCGTCCAACCT		58	NA	
Drosophila melanogaster	50	cals	FBgn0039928	FBtr0089208,FBtr0089207	2	2	2	84	4	1140617	1140635	TCGCCTAGACTTATGTGAC		58	1139632	1140570	GATGTGCTTTGTCTTAAGGG		58	NA	
Drosophila melanogaster	50	CG1544	FBgn0039827	FBtr0085755,FBtr0113311,FBtr0085756	3	3	3	88	3R	27027463	27027481	TAACCTATTGGGACACTGG		58	27027532	27027611	ATGGATGTTAAAGTCTTCGG		57	NA	
Drosophila melanogaster	50	CG31021	FBgn0051021	FBtr0085666	3	1	1	86	3R	26428681	26428759	CTTAAACTGAATCGACAGTGC		59	26428807	26428825	AGCTTCCTTCATGAGATGC		59	NA	
Drosophila melanogaster	50	tmod	FBgn0082582	FBtr0113483	1	1	7	100	3R	26398783	26399969	ACATCGACAGAATCTTCCG		59	26400033	26400051	GTTATAGGCGACCAGATCC		59	NA	
Drosophila melanogaster	50	hdc	FBgn0010113	FBtr0085620,FBtr0085621,FBtr0085619	2	3	3	82	3R	26184088	26184106	ATTCGATCGCTATCCACTG		59	26184151	26185704	CGTATTTAACCTCGATGCAG		58	NA	
Drosophila melanogaster	50	CG15506	FBgn0039686	FBtr0085456	1	1	2	75	3R	25547135	25547153	GATTGACGCCAAATGAGAG		58	25547402	25547420	TCATATGGAGCATAGCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14518	FBgn0039621	FBtr0085341	3	1	1	99	3R	24851100	24851118	ACGATCAATCACACCTGTC		59	24851688	24851708	GATATTCTCCAGTGGGAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14529	FBgn0039609	FBtr0085328	3	1	1	60	3R	24699150	24699169	GGAAAGTTGACTCTACTGGG		59	24699189	24699210	GTTTAATCTGGGAGTTGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14529	FBgn0039609	FBtr0085328	1	1	1	60	3R	24699160	24699179	CTCTACTGGGTGTCTATGTG		58	24699201	24699220	AACTGTAGGCGTTTAATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17856	FBgn0039576	FBtr0085279	2	1	1	61	3R	24120011	24120029	CAAACTGTACGATGAACGC		59	24120054	24120072	TCTTGGTCATGGAAAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33213	FBgn0053213	FBtr0085271	1	1	1	60	3R	23744604	23744622	GTATTTACCAGAGGAACGG		57	23744562	23744581	AAATTTGTCGGAATTGGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5402	FBgn0039521	FBtr0085213	1	1	1	60	3R	23327995	23328014	TTTACAACAACGGAATCCAG		58	23327954	23327972	TGGATGAATCTGTTGTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14242	FBgn0039443	FBtr0085034	1	1	1	60	3R	22462758	22462778	CGGAGACGAATATCTTTACAC		58	22462798	22462818	ATGTCCAGTGGATTATTCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14551	FBgn0039408	FBtr0084971	1	1	1	132	3R	21887696	21887714	ATCAACAATCTCTGGCTGG		59	21887270	21887288	CATAGATAAGTGGTCCCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8968	FBgn0039400	FBtr0084951	3	1	1	94	3R	21803181	21803200	CGAGGACTTATCTTTGACAC		57	21803401	21803419	AAGGCAGTTCCAGATTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CHKov1	FBgn0045761	FBtr0113351,FBtr0113352,FBtr0113349	2	3	5	291	3R	21149362	21149380	GATAACCTAGTGGAGCACC		59	21149029	21149047	AATTAAAGTCCAGGGCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10238	FBgn0039280	FBtr0084782	1	1	1	115	3R	20952156	20952298	ATCAGGCCTAAGAAATCGA		58	20952059	20952077	AACTCAGCGTCATTAACTC		57	NA	
Drosophila melanogaster	50	CG11820	FBgn0039270	FBtr0084765	3	1	1	67	3R	20892009	20892027	ATCTCAAGCGCTACAAGAG		59	20892058	20892076	ATCGTAGACATCCTTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nmnat	FBgn0039254	FBtr0084749,FBtr0084750	1	2	2	106	3R	20771798	20771877	CAAGTATCAGAGCAACATTACG		59	20771944	20771962	GAAGGTACTTGACCGACTG		59	NA	
Drosophila melanogaster	50	niki	FBgn0045980	FBtr0084737	2	1	1	95	3R	20649804	20649879	GAACAAAGGGTACTCCTATGAG		59	20649730	20649748	ATGGACACATTGCTGTAGG		59	NA	
Drosophila melanogaster	50	CG13624	FBgn0039209	FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795	1	6	6	107	3R	20386540	20386627	CATTAAGGTGTACAAGCACAG		59	20386453	20386471	CTTAGCTTGTCCAGTTCCT		58	NA	
Drosophila melanogaster	50	CG6454	FBgn0039187	FBtr0084608	3	1	2	112	3R	20175949	20177784	GATCGAAGAATCCAGCTCC		59	20177859	20177878	TTAAATTGGGACTGCTACCC		59	NA	
Drosophila melanogaster	50	CG17083	FBgn0039070	FBtr0084383	2	1	1	60	3R	19112730	19112749	TCAATCTCTACAACTCGGTG		59	19112689	19112708	TCCATATTGCTAGATTCCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6569	FBgn0038909	FBtr0084155	3	1	3	128	3R	17693227	17693246	CTTATCAAGGAACGGAACAG		58	17692978	17693137	CTGTATGACCTGGTCATCTC		59	NA	
Drosophila melanogaster	50	CG7956	FBgn0038890	FBtr0100124,FBtr0110891,FBtr0084112	2	3	3	92	3R	17350158	17350177	TGAAATCTCCGTTTATGGTG		57	17350229	17350313	GAGTATAGTCTCCCTTTAATGC		57	NA	
Drosophila melanogaster	50	CG3308	FBgn0038877	FBtr0084102	2	1	1	100	3R	17097942	17097960	CATGTACCCAAACACAAGG		58	17097799	17097881	GTTGGAAGGTACAATATCTGTG		58	NA	
Drosophila melanogaster	50	CG17279	FBgn0038850	FBtr0084042	1	1	1	84	3R	16875906	16875924	AATTTGGCATAACCTTCGC		59	16875296	16875858	TTTCAATCCCAGTAGTCGC		59	NA	
Drosophila melanogaster	50	Calx	FBgn0013995	FBtr0083999,FBtr0084000,FBtr0083998	3	3	3	147	3R	16838010	16838030	CCTTTGTGGTATCCATATTCG		58	16838139	16838225	GCGAATGTATCTGGTATGC		58	NA	
Drosophila melanogaster	50	RpS30	FBgn0038834	FBtr0083969	2	1	2	113	3R	16676605	16676623	TGGACTAGAGACCATCGAG		59	16676787	16676805	CAATCGAGGCTGAATTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	TFAM	FBgn0038805	FBtr0083949,FBtr0083948	1	2	2	60	3R	16401261	16401280	CGGAAATCTTATCGATCCAC		58	16401220	16401238	TATATCTTTGGAGGCCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or92a	FBgn0038798	FBtr0083887	3	1	1	80	3R	16331619	16331704	TGATATCTTCAAGCTCTCGG		58	16331747	16331765	GGATGCGTTTGTATTTGGT		58	NA	Nonspecific
Drosophila melanogaster	50	CG31206	FBgn0051206	FBtr0083875	1	1	1	80	3R	15933212	15933304	GATATGCTCATAATGTGCAGG		58	15933152	15933172	GTGGTAGATTTCCATGAAACC		58	NA	
Drosophila melanogaster	50	CG31220	FBgn0051220	FBtr0083782	1	1	1	60	3R	15475528	15475547	GATTAACACTCGCTATGTCC		58	15475570	15475588	GATTTGCAAGACCGTATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tinc	FBgn0038554	FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769	2	4	4	113	3R	13691908	13692611	CTTCCTAGCAGCTCTTGTC		59	13692688	13692706	TAAGTGCTGTCCAATGGAG		59	NA	
Drosophila melanogaster	50	alt	FBgn0038535	FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416	2	6	6	164	3R	13500933	13500951	GTAGCAACCACAATAGCAC		58	13500724	13500805	ATGTGTTTGTCGTCTTGGT		59	NA	
Drosophila melanogaster	50	mRpS11	FBgn0038474	FBtr0089893,FBtr0089894	2	2	3	106	3R	12898895	12898967	GGATCACAAAGGAGTCCTC		59	12899037	12899055	TAATGGTAACCGCTGTAGC		59	NA	
Drosophila melanogaster	50	Patr-1	FBgn0028470	FBtr0083392	1	1	1	81	3R	12872449	12872469	TCCTAGTGAGCATTTCATCTG		59	12872512	12872586	GAAAGGATTCCAAAGCGAC		59	NA	
Drosophila melanogaster	50	Mhcl	FBgn0026059	FBtr0110973,FBtr0110974,FBtr0083229,FBtr0083231	1	4	6	98	3R	11916206	11916226	ACCAGAGCTTGATATTCATGG		59	11915531	11916146	TATTATAGGCACCAGCTGC		59	NA	
Drosophila melanogaster	50	pnr	FBgn0003117	FBtr0083220,FBtr0083221	3	2	2	130	3R	11865150	11865168	CATTCAGACCAGGAAACGA		59	11865262	11865348	AGGGTTTGAGATCATGCTC		59	NA	
Drosophila melanogaster	50	CG14872	FBgn0038346	FBtr0083157,FBtr0083156	2	2	2	64	3R	11334093	11334111	GAACGAAGATACGCAAACC		59	11334047	11334065	GTTTGTAGGTCACAGTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sra-1	FBgn0038320	FBtr0083085	1	1	1	86	3R	11161917	11161935	CAGAATAACACTGCACGTC		58	11161985	11162064	CGAATGAAACGATTCGTGG		59	NA	
Drosophila melanogaster	50	CG4210	FBgn0038302	FBtr0083049	1	1	2	80	3R	11039816	11039897	TCTCCATGATTCAAGAACTG		57	11039939	11040026	CGTCTCGTTTAAGATCTTCC		58	NA	
Drosophila melanogaster	50	CG3731	FBgn0038271	FBtr0083000,FBtr0083001	1	2	2	80	3R	10717532	10717550	CAACACATGCTACAAGGAC		58	10717594	10717686	TTGAAGAGCATATCCTCGC		59	NA	
Drosophila melanogaster	50	Abi	FBgn0020510	FBtr0112896,FBtr0082910	3	2	2	101	3R	9946188	9946430	CGCAATATCAACAGGAATCAC		59	9946107	9946125	GTCTTGATGCTCATCCTCC		59	NA	
Drosophila melanogaster	50	CG7518	FBgn0038108	FBtr0082697	1	1	2	114	3R	8832837	8832855	CAATTCCTATCTGGAGGGC		59	8832933	8833261	ATTGTGTATGGAGACCTCG		58	NA	
Drosophila melanogaster	50	CG7518	FBgn0038108	FBtr0082697,FBtr0082696	1	2	2	100	3R	8825930	8826123	TGCTGACATACATTCTGGAC		59	8826186	8826204	GAACTTTCGCAGGAAATCG		59	NA	
Drosophila melanogaster	50	granny-smith	FBgn0040493	FBtr0082728,FBtr0082730,FBtr0082729	2	3	3	122	3R	8785059	8785077	TAGGGATAACTTGCATGCC		59	8784891	8784910	GCATCCGTGTTATTGATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Lk6	FBgn0017581	FBtr0082535,FBtr0082534	1	2	2	80	3R	7581105	7581184	GTCCATTCAAGAAGGACAC		58	7581043	7581062	TTAGAAATTAGGTCCTTGGC		57	NA	
Drosophila melanogaster	50	CG18476	FBgn0037931	FBtr0082443	3	1	1	97	3R	7501593	7501611	GAAATGATCCAGCATCAGC		58	7501443	7501533	TCCATAATGCTCTTGGAGAC		59	NA	
Drosophila melanogaster	50	CG6813	FBgn0037923	FBtr0082450	2	1	1	61	3R	7451857	7451875	CACCGACTAGTTTGAACCA		59	7451626	7451832	AGTCAGTTCATATGGACCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	dpr5	FBgn0037908	FBtr0082395,FBtr0082394	1	2	2	222	3R	7330267	7331006	CAACTCGAATTCTGACAGC		58	7331192	7331210	CATCGAACATAAGTTGCCG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	PGRP-LB	FBgn0037906	FBtr0082398,FBtr0082396,FBtr0082397	1	3	3	190	3R	7279014	7279184	AGATTGGAGAACCGAACTG		59	7278842	7278860	TTATGTGGGTAAAGTGCGG		59	NA	
Drosophila melanogaster	50	mRpL40	FBgn0037892	FBtr0082384	1	1	1	112	3R	7234008	7234026	GATGAACTGGAGGTTCCAC		59	7234161	7234179	CACTGCTTCTTGAGGAGAG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG4570	FBgn0037844	FBtr0082287	2	1	1	61	3R	6683264	6683285	CATGGACGATCTTAAATTCGTC		59	6683307	6683325	GCGAGTCAAGGAAGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Skeletor	FBgn0020517	FBtr0091656	3	1	1	117	3R	6518760	6518778	ATTCAGTGTCACGAACCAG		59	6518916	6518935	TGATGTACCAGGAAATTCCC		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082207,FBtr0082209,FBtr0082206,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210,FBtr0082208	2	8	8	177	3R	5845147	5845239	TATCAATCGCTATCGTCCTG		59	5844989	5845007	ATAGTTGAGCCAGATTCGC		59	NA	
Drosophila melanogaster	50	CG16905	FBgn0037762	FBtr0082144	1	1	1	60	3R	5640482	5640503	TACTATCTATCCTCGATCAGCA		59	5640521	5640542	TGATGTATTTCTTCCACCAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8132	FBgn0037687	FBtr0082029	2	1	1	64	3R	5227958	5227976	CAACCAACTCTTTGTGGTC		58	5228004	5228022	CATAGGCTACATACTCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rel	FBgn0014018	FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338	2	4	4	60	3R	4870435	4870454	TGAAGAATGTGTATCCGGAG		59	4870394	4870414	TTGACCTTACATGGAATCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11035	FBgn0037544	FBtr0081816	3	1	1	61	3R	3858441	3858459	CAGGAACCAAGGAAGTGAG		59	3858398	3858419	TCTCATAAGCCTGATTGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10435	FBgn0037539	FBtr0081820	1	1	1	60	3R	3837034	3837053	AAAGGTGGTTAGTCTATGCG		59	3836933	3836951	CAGTGGAATAAGGTGTTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1227	FBgn0037491	FBtr0081598	3	1	1	105	3R	3074115	3074188	TTACACAGAGGACATGCAC		59	3074028	3074046	CTGTATCAGATCGTGGGTC		59	NA	
Drosophila melanogaster	50	CG14605	FBgn0037486	FBtr0081602	1	1	3	99	3R	3044372	3044393	CAACAGGACGATAATAAAGCTG		59	3044052	3044312	TCCCGACATAGAAATCAGC		59	NA	
Drosophila melanogaster	50	CG10981	FBgn0037384	FBtr0078638,FBtr0078639	2	2	2	146	3R	1651124	1651142	CTTACCCAGGATGTGATCC		59	1651306	1651540	TTCTACTGGACTCGTTCTG		58	NA	
Drosophila melanogaster	50	Vha26	FBgn0015324	FBtr0078701,FBtr0078700	3	2	2	106	3R	1418407	1418428	CTCAAGATCATGGAATACTACG		58	1418495	1418591	ACTTTCAGCACCTTCAGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14667	FBgn0037317	FBtr0078788,FBtr0100433	3	2	2	162	3R	1201809	1201883	ATCCGAAAGTTCAGGTGTG		59	1202006	1202027	AGAAGGTGGTAATAATTGAGGG		59	NA	InUTR
Drosophila melanogaster	50	rpk	FBgn0022981	FBtr0078859	2	1	1	136	3R	473035	473130	GATTTAAGGTACTGCTTCATGC		59	473227	473245	GTACTCTGCTATTCCCGAC		59	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113339,FBtr0078898,FBtr0078902,FBtr0113341,FBtr0078899,FBtr0078901,FBtr0113340,FBtr0078897,FBtr0078900,FBtr0113338	3	10	15	217	3R	110087	110105	TAGCTAAGCAGATGGTTGG		59	120999	121298	GATGTTGTACTTATCGCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	Gel	FBgn0010225	FBtr0078971,FBtr0078968,FBtr0078973,FBtr0078972,FBtr0078969	1	5	5	135	3R	66120	66138	TCAATACGAGCAAGAGGAC		59	66237	66319	AAAGTAAAGCTTTGCCGTG		59	NA	
Drosophila melanogaster	50	CR32489	FBgn0046767	FBtr0076761	3	1	1	60	3L	7997569	7997588	CATATCGTATGGCAGTAACC		57	7997611	7997629	ATAGCTGAAACCAACACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32350	FBgn0052350	FBtr0070046	1	1	1	60	3L	23143232	23143250	GCTCTTTGTTCCCTTACCA		59	23143190	23143211	CATTATTGATATCCGGTGTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11241	FBgn0037186	FBtr0078536,FBtr0113188	3	2	2	191	3L	22729703	22729721	CACCTACGAGCAGATTCTC		59	22729072	22729548	TGGTTAACCTTTGGGTGAC		59	NA	
Drosophila melanogaster	50	CG3680	FBgn0037027	FBtr0078256	1	1	1	80	3L	20805232	20805250	GGAACTGATACAGGGTTCC		59	20805292	20805371	GTGCGTAGATAGCATTTAAGG		58	NA	
Drosophila melanogaster	50	Psn	FBgn0019947	FBtr0078192,FBtr0078193,FBtr0114517	2	3	3	80	3L	20426898	20426919	GTGTTCATTAAATACCTGCCTG		59	20426959	20427050	AAGGACAGCAATAAGATCCC		59	NA	
Drosophila melanogaster	50	CG32226	FBgn0052226	FBtr0074846	3	1	1	98	3L	20292669	20292687	ACATCAGACAAGTGAACCC		59	20292320	20292610	CATGGCATTCCATTGTAAAGAG		59	NA	
Drosophila melanogaster	50	rdgC	FBgn0004366	FBtr0074834,FBtr0074833,FBtr0074835	1	3	4	115	3L	20253983	20254001	TCCAGAAATGGTATCGCAG		59	20254080	20254321	TTTGTATAGCTCAGCCTGG		59	NA	
Drosophila melanogaster	50	CG7335	FBgn0036941	FBtr0074865	3	1	1	60	3L	20125848	20125866	TTCGAATGTCGTAATCCCG		59	20125806	20125824	CGTTGAATTGTATGACCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gyc76C	FBgn0013974	FBtr0100157,FBtr0100156,FBtr0100155	3	3	3	89	3L	19717434	19717452	ATAACTCGAACAACATGCC		58	19717243	19717381	TGATGAGCTTGTACTCTGG		58	NA	
Drosophila melanogaster	50	CG6885	FBgn0036810	FBtr0075053	3	1	1	60	3L	18738153	18738172	TCATCAGAAGGATGAAGGTG		59	18738195	18738213	AGAGAATTGCTCTTAGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	W	FBgn0003997	FBtr0075133	2	1	1	263	3L	18165271	18165290	ATAATCCAGTCTGCCATACC		58	18163059	18163077	AAGGGCTAGCTGATTTCAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Mip	FBgn0036713	FBtr0075241	2	1	1	60	3L	17339032	17339050	CACCCTCTAATGAACCAGG		59	17338990	17339009	CTAAGTTGGTCCAGTACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14057	FBgn0036696	FBtr0075286	3	1	1	127	3L	17037746	17037820	TTACTTTGATCGGAGATGTACG		59	17037640	17037658	GGTTATCTGACCCATGGTG		59	NA	
Drosophila melanogaster	50	Lmpt	FBgn0036672	FBtr0089452,FBtr0089457,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459	2	6	8	123	3L	16905417	16906329	CATCGACTCCAAGGATCTG		59	16906415	16906434	ACAGTAGATCTTATCCGCCT		59	NA	
Drosophila melanogaster	50	Rpn12	FBgn0028693	FBtr0075308	1	1	1	60	3L	16576664	16576684	CTACAACAAGATCTTTCAGGC		58	16576703	16576724	CATAAAGTAGCTATACACCTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32158	FBgn0052158	FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404	1	5	7	106	3L	16485841	16485859	CGTACAGCAACTTCAAGAC		58	16485591	16485772	AATGATTGTCGTATCCCTCC		59	NA	
Drosophila melanogaster	50	CG34248	FBgn0085277	FBtr0112442	3	1	1	120	3L	16263666	16263684	GCTATCCTTTGTTCTACCC		57	16263564	16263582	TCCTTTGACCACCTTATGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG33796	FBgn0053796	FBtr0091800	3	1	1	183	3L	16162920	16162939	TACTGTTCACTACCAAACGT		58	16162696	16162774	TACGATCATGTCACCTTGC		59	NA	
Drosophila melanogaster	50	CG32152	FBgn0052152	FBtr0075489	1	1	1	60	3L	16136081	16136099	ATCACGGTCATGAATGGTC		59	16136039	16136057	TGATGCCATCTACTTTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	brm	FBgn0000212	FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523	1	4	4	159	3L	15964327	15964406	GATACCATTCTAGGTCGAGG		58	15964187	15964205	GATTCTTACGCTTTCGTCG		58	NA	
Drosophila melanogaster	50	GXIVsPLA2	FBgn0036545	FBtr0075509,FBtr0075508	1	2	2	160	3L	15948605	15948623	AACTGCATATACCAGTGCC		59	15948810	15948828	TCATTGCAACATGTCTCCA		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Eig71Ed	FBgn0004591	FBtr0075572	3	1	1	90	3L	15645922	15645941	AGAGTGCAGAACTAAGACTC		58	15645994	15646088	TCGATTAGAACCCAAGCAG		59	NA	
Drosophila melanogaster	50	Trl	FBgn0013263	FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704	1	8	9	198	3L	14747639	14750013	CTTGCTAAAGAATACACCATGC		59	14747462	14747480	GTAGTCGTCCTTGGTAACC		59	NA	
Drosophila melanogaster	50	CG9238	FBgn0036428	FBtr0075724,FBtr0075723	3	2	2	106	3L	14535466	14535485	CAACGAAACAGAATATTGGG		57	14535320	14535340	GATTCTGACCCTTATCATAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17364	FBgn0036391	FBtr0075789,FBtr0075788	1	2	2	91	3L	13976266	13976284	TCAGCAAGACGAAGTATCC		59	13975942	13976211	AAGCGGTATTCCTGTATCG		59	NA	
Drosophila melanogaster	50	CG17364	FBgn0036391	FBtr0075789,FBtr0075788	2	2	2	92	3L	13976266	13976285	TTCAGCAAGACGAAGTATCC		59	13975942	13976211	AAGCGGTATTCCTGTATCG		59	NA	
Drosophila melanogaster	50	CG10960	FBgn0036316	FBtr0075942,FBtr0075943,FBtr0075941	3	3	3	134	3L	12820167	12820185	TATCCTGTTCGTCTATGCC		58	12819717	12820070	TCTTTGGAAACCAAGTAGGT		58	NA	
Drosophila melanogaster	50	CG5620	FBgn0036268	FBtr0076012,FBtr0076013	3	2	2	91	3L	12206879	12206897	CTTCTCGATATGGTCGGTG		59	12206563	12206824	AGGATCCCTTGAGATCCTC		59	NA	
Drosophila melanogaster	50	CG7252	FBgn0036226	FBtr0076041	3	1	1	60	3L	11941460	11941478	CATCCAATGCAACAATGGT		58	11941502	11941520	GTTGAAGTACAGACCGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5946	FBgn0036211	FBtr0110869,FBtr0110868	3	2	4	70	3L	11811201	11811219	GATCTGGTACACAGTCGAC		59	11810714	11810733	TCATATCATCGTTCACGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11652	FBgn0036194	FBtr0076131,FBtr0076130	2	2	2	161	3L	11688043	11688062	GATGTGATAGTACCACAGGC		59	11687837	11687920	CTTGTAAGCCTTTAGCAACG		59	NA	
Drosophila melanogaster	50	CG14135	FBgn0036193	FBtr0076111	3	1	1	182	3L	11685611	11685629	GATCAGAGGAAGAACTCGC		59	11686327	11686348	CTCTCGTTCTTTGATTCTTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	GlcAT-P	FBgn0036144	FBtr0076189	1	1	3	80	3L	11176779	11176800	CATTTATATGGCGCTCTATCAG		58	11175730	11176739	GATTTCTCCTGATGCTTGAC		58	NA	
Drosophila melanogaster	50	Ufd1-like	FBgn0036136	FBtr0076223	2	1	1	60	3L	11115276	11115294	TGATTTCCAGTTTGGACTC		57	11115234	11115252	GCTTCTATCACTGATAGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32071	FBgn0052071	FBtr0076231	2	1	1	116	3L	11096916	11096935	TATTCTTGTGCTATCCCTGG		58	11096819	11096837	GAAGTGGATGAGCTACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Elo68beta	FBgn0036128	FBtr0113161	3	1	2	123	3L	11094312	11094386	CACATGAAATCCGGATAGC		58	11094207	11094226	TACACATGTAGGAAGCTCAG		58	NA	
Drosophila melanogaster	50	JIL-1	FBgn0020412	FBtr0076236,FBtr0076237	1	2	2	80	3L	11075163	11075182	CGGAGAACATAATGTTCGAG		58	11075042	11075121	AGCGATTATTGTAACATGCG		59	NA	
Drosophila melanogaster	50	CG7888	FBgn0036116	FBtr0076200,FBtr0076199,FBtr0076201	3	3	3	130	3L	11052080	11052098	TTCATCTCCCTGTTTGGAG		58	11052191	11052268	ACAAAGTTGCTTAACACCAG		58	NA	
Drosophila melanogaster	50	CG8072	FBgn0036070	FBtr0076295	3	1	1	60	3L	10145488	10145506	GAACCGCATTTCAACTACG		59	10145528	10145548	CATTCGATTGTCGAATCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pall	FBgn0036005	FBtr0076471	3	1	1	61	3L	9480554	9480572	CTTCAAGCGCATCAAATCC		59	9480442	9480529	ATAGAATGTGGTTCCTGCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3891	FBgn0035993	FBtr0076504	3	1	1	77	3L	9434812	9434831	TTTAAGTGTTAGCACTGCAG		58	9434754	9434772	GGCATTGGTATCACTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32032	FBgn0043806	FBtr0076529	3	1	1	62	3L	9087254	9087272	GCTCCATATACACAGTGGT		58	9087297	9087678	TACGCAGCTCATCTAAACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8006	FBgn0035857	FBtr0076698	2	1	1	60	3L	8205622	8205640	ATTGGAGTATGAGCTCTCG		58	8205664	8205682	ATCCCGATTGAATGTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pbl	FBgn0003041	FBtr0112817,FBtr0076772,FBtr0076771	1	3	5	199	3L	7895365	7900229	AAGGAATGCATTCTGGGAC		59	7895110	7895128	TTCAGGTCCTTCTTGATGC		59	NA	
Drosophila melanogaster	50	Hn	FBgn0001208	FBtr0100225,FBtr0076811	1	2	2	92	3L	7755875	7755895	ACCAAGTATCCCATTACTCAG		58	7755948	7756027	CGAGTTCGCAAATTTAATGG		58	NA	
Drosophila melanogaster	50	CG14835	FBgn0035782	FBtr0076866	2	1	1	60	3L	7430222	7430240	TATTTGATGGCCCAATTCG		58	7430180	7430198	GGACATTGACGGTTAACCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18417	FBgn0035780	FBtr0076855	2	1	1	93	3L	7394162	7394183	GGACAGATGTATTTGACTTTGC		59	7394304	7394322	GCAGATCCTCTTCTGTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10592	FBgn0035619	FBtr0077129	2	1	1	86	3L	5586368	5586386	TGTCTATCAACGGCTATCC		58	5586231	5586249	AGATGGTAAAGGGAAGCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13717	FBgn0035562	FBtr0073320	2	1	1	74	3L	4629874	4629893	ATTAGTTACTTGGGTGGACC		59	4629819	4629839	ATCCAGCGATAATATCGAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15024	FBgn0040699	FBtr0073331	2	1	1	78	3L	4463134	4463152	GAAGATCTGGAGGAACCAG		59	4463074	4463093	CCTGGTATTTGTATCCATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syx17	FBgn0035540	FBtr0073293	1	1	1	70	3L	4404177	4404195	CTGGCATGAAGGAATTTGC		59	4404290	4404308	GTCGTCGTACTGAGAACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1319	FBgn0035529	FBtr0073239	3	1	1	163	3L	4292834	4292852	TAACATAACCTTCGTGCGT		59	4292979	4292997	TGGTCTTGAAGATCAGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pav	FBgn0011692	FBtr0073227	2	1	1	89	3L	4243628	4243646	TGTACTCGGTGTTTGTCAC		59	4243696	4243775	TCTGCAAAGTCTTCTGTATACC		59	NA	
Drosophila melanogaster	50	CG14985	FBgn0035482	FBtr0073191	3	1	1	111	3L	4004262	4004280	CAGATCAAGGGTGACTTGG		59	4004526	4004547	GCCCAATCTTAATTATGTAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14964	FBgn0035410	FBtr0073110	2	1	1	101	3L	3175327	3175442	GGATAAGGACAAACAAGATTCC		59	3175247	3175266	GTAAACTCTAGGAAGGCCAG		59	NA	
Drosophila melanogaster	50	CG32488	FBgn0052488	FBtr0073008	2	1	1	60	3L	3015450	3015468	GAAATAACCGGGTGATGGT		59	3015408	3015426	CCGGTATAGGCTTTCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32305	FBgn0052305	FBtr0072876	1	1	1	83	3L	2250639	2250660	CATGATTAAGTACACCATGCTC		59	2250704	2250780	GGGTATGTAGCTTCTTCGA		58	NA	
Drosophila melanogaster	50	Patj	FBgn0067864	FBtr0072781,FBtr0072780,FBtr0072779	2	3	3	113	3L	1800627	1800645	AGTAAGGGACTCCCTAGAC		58	1800782	1800800	GTGTAGTACTTGTGACGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12090	FBgn0035227	FBtr0072705,FBtr0072704,FBtr0072703	3	3	3	152	3L	1524353	1524439	ATAGTGGCTGACTTGATTGG		59	1524220	1524238	CAGGAATGTAGTGCAAAGC		59	NA	
Drosophila melanogaster	50	CG17181	FBgn0035144	FBtr0072563	2	1	1	244	3L	585229	585247	AATCTCCGACTCGAATTCC		59	584943	585022	TATCCATGATTGATCTGTGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG4622	FBgn0035021	FBtr0100276,FBtr0072344	2	2	2	76	2R	20421882	20421951	TGTTTAATGCAGATGGCTC		58	20421824	20421845	GACGTCGTATTTAAAGGTTTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3394	FBgn0034999	FBtr0072268,FBtr0072269	3	2	2	248	2R	20184730	20184749	AGACGTCTTCTTTAACTCGG		59	20185258	20185276	TAATCCATGTCCACCTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4065	FBgn0034982	FBtr0100398,FBtr0072280	1	2	2	97	2R	20024113	20024134	CCAGTTATCAGTTTCTAGAGGA		58	20023979	20024055	GATAAAGAAGTTCAGCGCC		58	NA	
Drosophila melanogaster	50	CG5594	FBgn0025698	FBtr0072137,FBtr0072136	3	2	4	99	2R	19797271	19797290	CTACAACCAGGATGAGTCTG		59	19797351	19799213	GATATCACCTGAGTCATCGT		58	NA	
Drosophila melanogaster	50	wibg	FBgn0034918	FBtr0072233	1	1	1	222	2R	19744002	19744022	CATCAACTCGATATCCAAGAC		58	19743800	19743818	CTCCAAGTCCTTGATCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)not	FBgn0011297	FBtr0072095	2	1	1	72	2R	19593272	19593290	CACTCGCTACCCTATTTGG		59	19593218	19593236	CAATCAGTCCGAGGATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	IM18	FBgn0067903	FBtr0091694	2	1	1	226	2R	19488696	19488714	GATTCACTTGAGATTGCCA		57	19488488	19488506	TAGTCTTCGATGGTTTCCC		58	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG3500	FBgn0034849	FBtr0072038	1	1	1	243	2R	19244588	19244606	ATCAGCTTCACGATCTTCG		59	19244178	19244381	TAAAGTAAGCCAGCACCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG30417	FBgn0050417	FBtr0072041	3	1	1	60	2R	19214915	19214933	TTACCATGAGATTGTCCGG		59	19214873	19214891	CGTATTCAAACGATGCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k09913	FBgn0021979	FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961	1	4	4	99	2R	18958340	18958358	GAGATGGGATTCGATGTGG		59	18958497	18958515	GGAATCGAATAGTCTCGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30193	FBgn0050193	FBtr0071948,FBtr0113364,FBtr0071945,FBtr0071949,FBtr0071946,FBtr0071947,FBtr0071944	3	7	7	69	2R	18814926	18814944	TTGTATCGCAAATTCGTGC		59	18815045	18815063	CCTGATTCACGTACTCGTC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG30193	FBgn0050193	FBtr0071948,FBtr0071949,FBtr0071946,FBtr0071944	3	4	7	80	2R	18813126	18814633	GGCTTATAATATTGTTCTGCGG		59	18814673	18814692	ATTCCTTGACATCCTTGGTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG3624	FBgn0034724	FBtr0071845	1	1	1	88	2R	18282134	18282152	AGGATGTGGTTCTCAAGTG		59	18282006	18282024	GGAAATGACATTATCGCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11170	FBgn0034705	FBtr0071786	1	1	1	60	2R	18065782	18065800	AGTAGACTTGTGAAAGCCA		58	18065740	18065760	GCCTTAGAAAGTAAATCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4021	FBgn0034659	FBtr0071716	2	1	1	125	2R	17662013	17662102	GTACAGCATACAACGTCCA		59	17662191	17662209	GTGCCTATACCAGGATTGG		59	NA	
Drosophila melanogaster	50	CG15676	FBgn0034651	FBtr0071668	3	1	1	60	2R	17559696	17559716	GAGCACGATATCGACTATCTG		59	17559738	17559756	ATACGGCTAGGTTCATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30394	FBgn0050394	FBtr0071614,FBtr0071613	3	2	2	125	2R	17209252	17209326	ATACAGAAAGGGTCATACGG		58	17209146	17209164	ATTATAAGCTCCACGGAGG		58	NA	
Drosophila melanogaster	50	CG10069	FBgn0034611	FBtr0071590,FBtr0071589,FBtr0071591	3	3	3	80	2R	17172235	17172255	TATCTATCAGATGTGAGCGGA		59	17172297	17172371	ATACATCAGCAGAATGGGC		59	NA	
Drosophila melanogaster	50	CG9406	FBgn0034592	FBtr0071570	2	1	1	86	2R	17030212	17030230	GATTCCGTCGACTATCCAG		59	17030280	17030350	TGGTTCCATTTGTCGATCC		59	NA	
Drosophila melanogaster	50	shg	FBgn0003391	FBtr0071546	3	1	1	60	2R	16938710	16938731	GATCATTAATTACGAGGACGAG		58	16938671	16938691	GACATTCAGATCATAGTCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	IM14	FBgn0067905	FBtr0100038	3	1	1	110	2R	16757932	16757950	GAACTGTCTGAAGATCTGC		57	16758087	16758106	TCAGTTTGAATCAACGTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11159	FBgn0034539	FBtr0086248	1	1	1	128	2R	16543721	16543740	CATCCAAATCTATGCAGCTG		59	16543481	16543578	CGTTAAGGAACTCTTCGCA		59	NA	
Drosophila melanogaster	50	Ate1	FBgn0025720	FBtr0086318,FBtr0086317	1	2	3	80	2R	16143440	16143458	CGATACATAATGATCCGCC		57	16143302	16143397	AGGGTTTCTCATTCTGTAGG		58	NA	
Drosophila melanogaster	50	Fak56D	FBgn0020440	FBtr0114605	2	1	5	174	2R	15319735	15319816	GAATTGCTAAGATCCTGCTC		58	15319580	15319598	ATGAGTGGTTCGACTTCAG		59	NA	
Drosophila melanogaster	50	ena	FBgn0000578	FBtr0086583,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582	1	5	6	112	2R	15048910	15048988	CCATTCTCAAGGTCAATGG		58	15049063	15049082	CTTGACTTTCTGAATCTCCA		57	NA	
Drosophila melanogaster	50	CG5174	FBgn0034345	FBtr0086685,FBtr0086689,FBtr0086687	1	3	7	102	2R	14311982	14312385	AGAGCACTGTATACCAACG		59	14312451	14312469	GACAGTTTCGACGAAATGC		59	NA	
Drosophila melanogaster	50	lolal	FBgn0022238	FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778	1	4	4	80	2R	14042986	14043404	TCACAGATGTAACACTCGC		59	14042924	14042942	TAAAGTAGGGACTGCAAGC		59	NA	
Drosophila melanogaster	50	CG14481	FBgn0034260	FBtr0086841	3	1	1	80	2R	13573540	13573621	ATTCCCTGAGGATTGATCTC		58	13573662	13573682	CCTTAACTTGAAGCACATCTG		59	NA	
Drosophila melanogaster	50	CG30460	FBgn0050460	FBtr0087011,FBtr0087009,FBtr0087010,FBtr0113378	3	4	5	103	2R	12959348	12959484	AATCTGAAGACCAAGAGATCC		59	12959265	12959283	GACATCAGGTTTGGTTTGG		58	NA	
Drosophila melanogaster	50	fat-spondin	FBgn0026721	FBtr0086976,FBtr0086975	3	2	2	114	2R	12945252	12945270	TTAGTGGTCTGGATCTCTG		57	12945346	12945428	GAGTTGGGTGACATATAAGAG		57	NA	
Drosophila melanogaster	50	CG6421	FBgn0025827	FBtr0087043	1	1	1	64	2R	12760235	12760253	ACGATTATGCTCGAATCCA		58	12760281	12760299	GAAATTGTAGGGCATGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5522	FBgn0034158	FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026	2	6	6	88	2R	12676160	12676302	CTACACTATAGCAGCCTCG		59	12676354	12676372	AAATAACCGCATCCAACTG		58	NA	
Drosophila melanogaster	50	CG4927	FBgn0034139	FBtr0100547	3	1	1	116	2R	12460071	12460089	ATCACAAATCGACTGGGAC		59	12460721	12460739	TCATAGTTGGGATCCAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Menl-2	FBgn0029153	FBtr0100602	1	1	3	109	2R	12303124	12303200	ACTGAGGTTAGATTGGGTC		58	12303033	12303051	AAAGTCAGACAGTTGTTGG		57	NA	Nonspecific
Drosophila melanogaster	50	CG30324	FBgn0050324	FBtr0087181	2	1	1	93	2R	12175249	12175267	AAATTCTACGAGTTGCCAG		57	12175174	12175192	TATTGGTACAGGGACAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8405	FBgn0034071	FBtr0087210	2	1	1	80	2R	11935713	11935732	AACTCCTTCATCAAGAATCC		57	11935775	11935851	AATTTCCACTCTGATGACG		57	NA	
Drosophila melanogaster	50	CG30084	FBgn0083919	FBtr0113484,FBtr0111048,FBtr0100387,FBtr0087315	3	4	6	157	2R	11652754	11660560	ATAATGTGTACCGAGGTGC		59	11651322	11652635	GATAAAGGGTCCTCTGATCTG		59	NA	
Drosophila melanogaster	50	CG33462	FBgn0053462	FBtr0087284	3	1	1	95	2R	11584619	11584714	GACTTGCTAATAACCGTTCG		59	11584772	11584790	ATTGTACTCCTGGAAGGGT		59	NA	
Drosophila melanogaster	50	Vha14	FBgn0010426	FBtr0087341	2	1	1	102	2R	11567356	11567374	CAACTTTATGGTGGTCGAC		58	11567272	11567293	CTGGTTGATTAGAATGATGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arf51F	FBgn0013750	FBtr0087377,FBtr0087375,FBtr0087379,FBtr0087376,FBtr0087378	1	5	5	90	2R	11211571	11211592	GAGCTGCATAGGATAATTAACG		59	11211643	11211715	GTTTCATTGCATCAGGCAG		59	NA	
Drosophila melanogaster	50	CG12868	FBgn0033945	FBtr0087505	1	1	1	60	2R	10492613	10492631	TGATTAACAACCGATTCGC		58	10492571	10492589	AAATGGCTGTCGATTTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	beta4GalNAcTA	FBgn0027538	FBtr0087539	2	1	1	82	2R	10147578	10147598	GCAATCTTTACAACTGTCCAC		59	10147642	10147717	TGATCGATAAGGCAACCTG		59	NA	
Drosophila melanogaster	50	shot	FBgn0013733	FBtr0087619,FBtr0087618	2	2	6	138	2R	9805407	9809061	CAGTTTAAAGACGAACGCG		59	9804646	9804667	CCAGGAGTGAAAGTAAATTGTG		59	NA	
Drosophila melanogaster	50	IM10	FBgn0033835	FBtr0087654	2	1	2	60	2R	9295402	9295420	GAATGGTCATACCATCGTG		57	9295444	9295518	GAAACCGTTTCAGTAGTGC		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG4630	FBgn0033809	FBtr0087765	1	1	1	91	2R	9103755	9104117	TTACACTAGGTGCCAACTG		59	9103682	9103701	TGTGAACGTGTAGATGACTG		59	NA	
Drosophila melanogaster	50	nemy	FBgn0033765	FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875	1	6	6	192	2R	8558847	8559072	AAGCGGATGAGGAAATCTG		59	8558673	8558691	CTGTACGCTTATAGTCCCG		59	NA	InUTR
Drosophila melanogaster	50	spt4	FBgn0028683	FBtr0087840	3	1	1	75	2R	8521420	8521439	ATTATTGCCCTAACTACGCC		59	8521543	8521561	AGATACCACGAGTAAAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	muskelin	FBgn0033757	FBtr0087885,FBtr0087886	3	2	2	80	2R	8516767	8516840	GATCAAAGAGGAACTGGCT		59	8516705	8516723	ATGCCAGAAGAGATCATGC		59	NA	
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087832,FBtr0087836	2	2	8	102	2R	8505632	8505713	TCCTGAATACGATGGTCCA		59	8505779	8505797	CGAATAGCATTGACGTTCG		59	NA	
Drosophila melanogaster	50	CG8816	FBgn0033754	FBtr0087891	1	1	1	95	2R	8456977	8456995	TACGATTGTCCCATTCTGG		59	8456845	8456863	ATCACAGCCATGATACTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8828	FBgn0033740	FBtr0087948	1	1	1	108	2R	8355063	8355145	GACCAAGAACATTCAAACCA		58	8354974	8354994	CTGGTCGTAGTTCTTATTCAG		57	NA	
Drosophila melanogaster	50	Cpr49Ag	FBgn0033730	FBtr0087922	1	1	1	60	2R	8295498	8295516	GATAATGTGAACAACGCCG		59	8295621	8295639	GTATTCCGTTCGATGTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13160	FBgn0033720	FBtr0087911	3	1	1	80	2R	8261510	8261530	CCAATCCGGATATACTAATCG		57	8261571	8261643	CATTGATTAAAGGAGCAGCA		58	NA	
Drosophila melanogaster	50	CG33012	FBgn0053012	FBtr0087909,FBtr0087910	3	2	2	80	2R	8256395	8256468	GTATGATACAGAGGCTCACTC		59	8256510	8256528	GACTCCGTGTAGTAAACGA		58	NA	
Drosophila melanogaster	50	CG8889	FBgn0033675	FBtr0088025,FBtr0088024	3	2	3	109	2R	7914479	7914554	CAAACTAGATAATTGCACGC		57	7914389	7914408	ATCTATCCGAATCGTACCTG		58	NA	
Drosophila melanogaster	50	ths	FBgn0033652	FBtr0088030	1	1	1	174	2R	7695556	7697411	ATTAGTTGGCATGAGGGAG		59	7697548	7697567	CTTGTTGAACATGTAGCAGG		59	NA	Nonspecific
Drosophila melanogaster	50	wal	FBgn0010516	FBtr0088082,FBtr0088083	1	2	2	120	2R	7578024	7578042	TACTCAATCCGATCACCCT		59	7577365	7577383	CCATCCACCTTGGAAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30015	FBgn0050015	FBtr0088243,FBtr0113356,FBtr0113357,FBtr0088242	2	4	4	159	2R	6730710	6730728	TCGGATATACTGCGATCAC		58	6730477	6730588	GAATGGAAGTCTCCAATGTC		58	NA	
Drosophila melanogaster	50	CG12920	FBgn0033481	FBtr0088404	3	1	1	125	2R	5957463	5957481	AAGGTGAAAGTGGTGATCG		59	5957570	5957649	AGAGAAAGACGAAGGAGGA		59	NA	
Drosophila melanogaster	50	wun	FBgn0016078	FBtr0088553,FBtr0088552	1	2	2	182	2R	5291962	5296734	TTTAATCTTGCTCTGCGCT		59	5291417	5291816	TCCACGATGAATATCACGC		59	NA	
Drosophila melanogaster	50	CG13739	FBgn0033403	FBtr0088558	1	1	1	151	2R	5238261	5238279	ATATCCTGTAAGACGGCTG		58	5208667	5208685	CTTGGTTTGCTTGCTACAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Rep2	FBgn0028408	FBtr0112930,FBtr0088597	1	2	2	118	2R	5184940	5184958	AGGATGGCGAATACTTTCG		59	5185039	5185788	CGGTATAGCTGATATGGCAG		59	NA	
Drosophila melanogaster	50	CG18659	FBgn0027561	FBtr0088626	1	1	2	81	2R	5013709	5014934	TTAAGGACAAGACTAATCCGG		59	5013534	5013552	TTATAGGCGGTCTTCATGC		59	NA	
Drosophila melanogaster	50	CG8738	FBgn0033321	FBtr0088705	1	1	1	60	2R	4585962	4585980	GCCTATTTGAGGAACTGGA		58	4586003	4586022	CCTCTATTAATGGGAACCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30379	FBgn0050379	FBtr0088851	1	1	1	62	2R	3828676	3828694	TATACGCATGGGATTCGTC		59	3828771	3828789	AACGTGAACAGTAATTGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG30380	FBgn0050380	FBtr0088881	2	1	1	188	2R	3826956	3826976	CCCAATGATCCTAAGATAGCC		59	3826788	3826806	GAACCTATAGCCATAGGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lin19	FBgn0015509	FBtr0088845,FBtr0088847,FBtr0088848,FBtr0088846	1	4	4	93	2R	3806337	3806416	GCGAAGAGGTTCTTATCGA		59	3806473	3806491	ATCCGTTTCAGATCATCGT		58	NA	
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012	2	7	7	88	2R	3287506	3293551	CAAATTCTGAAAGTTCCGGAG		59	3287438	3287459	CTTGTCGTAGATCATCAAACAC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111079	2	1	60	92	2R	3245785	3245803	AGAGTTCGAACAATGGAGG		59	3236471	3245731	CTTGTACCATCTGTTAATGGG		58	NA	
Drosophila melanogaster	50	lbm	FBgn0016032	FBtr0089033	2	1	1	174	2R	2938956	2938974	CTATATCCACCTCAGCCTG		58	2939111	2939192	GAAGCAGATTAACTCGAAGG		58	NA	
Drosophila melanogaster	50	coro	FBgn0033109	FBtr0086208,FBtr0086209,FBtr0086207	3	3	3	147	2R	2752071	2752153	TCGGTATTTCGAGGTAACG		59	2751942	2751961	GTTCATGCGATAGAACTTGG		58	NA	
Drosophila melanogaster	50	CG7849	FBgn0033060	FBtr0085977,FBtr0085976	3	2	2	60	2R	1964592	1964610	CTGAGCAACATTTGCAAGG		59	1964950	1964969	GAATAGAACTAGACTGGCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or42a	FBgn0033041	FBtr0086052	2	1	1	86	2R	1679083	1679164	GGAACTAACATCAGTGTCAC		58	1679016	1679035	AGATTTGGCAAGTTTCTCAG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG17683	FBgn0040002	FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300	1	4	5	80	2R	19474	19550	AATCACTTCAGTTGAGGTGG		59	19590	19611	CAGTCTAAATCAAGGAGATCGT		59	NA	
Drosophila melanogaster	50	snRNA:U5:35D	FBgn0003936	FBtr0080770	1	1	1	60	2L	15751643	15751662	GTCGAATAAATCTTTCGCCT		58	15751602	15751621	GACTCATTAGAGTGTTCCTC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL5	FBgn0064225	FBtr0111129,FBtr0111128,FBtr0111131,FBtr0111130,FBtr0111132	1	5	5	99	2L	22428912	22428930	GTACAGATCGCCTATGCTC		59	22428771	22428849	AGTTGGTCAATCCAACCTG		59	NA	
Drosophila melanogaster	50	CG2225	FBgn0032957	FBtr0100618,FBtr0085918,FBtr0085914,FBtr0085915,FBtr0085917	1	5	5	105	2L	21669234	21669380	TTACAACGGTAACGATCAG		57	21669147	21669166	ACACCCATAGCTTAAATCTG		57	NA	
Drosophila melanogaster	50	CG2201	FBgn0032955	FBtr0100510,FBtr0085921,FBtr0085922,FBtr0100511,FBtr0085923	1	5	5	83	2L	21615151	21615169	GTCTCATCTGTTCTGGAGC		59	21615024	21615105	CGAGCAATACCATATTCCCA		59	NA	
Drosophila melanogaster	50	CG9243	FBgn0032926	FBtr0110945,FBtr0081498	3	2	2	60	2L	21168068	21168087	ATGAGCGAAATATCTGTTCC		57	21168027	21168046	ACGAAGAGTATAAGCACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31675	FBgn0051675	FBtr0081429	2	1	1	163	2L	20868505	20868524	TTTGAAACGGGTATTCAAGG		58	20869242	20869260	ATCCGTTGCAGTAGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9317	FBgn0032879	FBtr0081394,FBtr0081395	2	2	2	95	2L	20729942	20729960	CCGGATGACTATTGGTGTC		59	20729654	20729883	TTCGTCGTTATCCAGTTCC		59	NA	
Drosophila melanogaster	50	Hr38	FBgn0014859	FBtr0081397	2	1	2	61	2L	20690174	20690192	TGAGGCTTACTAACCAAGC		59	20689590	20690149	ACTAAAGGAGCTATTGGGT		57	NA	DesignRelaxed
Drosophila melanogaster	50	Taf13	FBgn0032847	FBtr0081340	3	1	1	84	2L	20093243	20093332	AGATCAAGTATGTGGGCAC		59	20093177	20093196	TAGGTTTGGCTTATACCTGG		58	NA	InUTR
Drosophila melanogaster	50	CG34051	FBgn0054051	FBtr0100106	1	1	1	114	2L	19960589	19960672	ATTTCGAACTGGAGCAGAG		59	19960493	19960514	CACCGTCAAAGAATAACTTCAG		59	NA	
Drosophila melanogaster	50	Rab9	FBgn0032782	FBtr0081206	3	1	1	159	2L	19434714	19434732	GTTCTACAGAGGATCGGAC		58	19434853	19434934	CGGAATGTCGTTCTTATTTCC		59	NA	
Drosophila melanogaster	50	CG17549	FBgn0032774	FBtr0081221	3	1	3	82	2L	19387760	19387870	CAACGATATTCGCATCCAG		58	19387696	19387714	CTCCTCTGTACCGATTCTG		58	NA	
Drosophila melanogaster	50	CG10602	FBgn0032721	FBtr0089317	1	1	4	103	2L	18859028	18859046	CATTTACGATTGCACCTGG		59	18857395	18858962	GAGTAGAGATCATTGGGTGG		59	NA	
Drosophila melanogaster	50	Pde11	FBgn0085370	FBtr0112544,FBtr0112545	2	2	2	80	2L	18535124	18535199	CTCCTTCCAGATTAAAGCCT		59	18535063	18535083	CACTGATCAAAGTGATGATGC		59	NA	
Drosophila melanogaster	50	kel	FBgn0001301	FBtr0081043,FBtr0081042	1	2	2	230	2L	18135777	18135795	CTACGTATACACTGCCACG		59	18134818	18135583	ATCACCTCGTTGAAATGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5131	FBgn0032644	FBtr0080984	3	1	1	62	2L	17485349	17485367	TATTAGCAAAGCAGATGCC		57	17485393	17485411	AAGTCTGCATAGCATTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr36c	FBgn0045485	FBtr0080964	3	1	1	112	2L	17181320	17181338	ATTTATCGGTCATGCTCCA		58	17181414	17181488	GTTCTCAAAGGCTTCTTCG		58	NA	
Drosophila melanogaster	50	CG13284	FBgn0032614	FBtr0080927,FBtr0080926	1	2	2	142	2L	16843628	16843646	AAATGAATGCCTACACCGA		59	16843386	16843522	AATGGCATACTGAATGCCA		59	NA	
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080904	2	1	13	127	2L	16770955	16770973	TGGTGCTGATATTGAGACC		59	16771130	16771950	GACAGTATTCTTTAACACCGG		58	NA	
Drosophila melanogaster	50	Idgf1	FBgn0020416	FBtr0080860	3	1	1	60	2L	16445566	16445586	TTCTACTACAAGGACATCACC		58	16445606	16445626	TGAGGAGAATCTTCAGTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	chif	FBgn0000307	FBtr0080838	1	1	3	145	2L	16343299	16344438	CCTGAAGAAGGAGACTTGC		59	16343172	16343193	GCATTCTCCTTATCCTTATCCA		59	NA	InUTR
Drosophila melanogaster	50	CG3975	FBgn0027559	FBtr0080713	2	1	1	60	2L	15256127	15256145	CCTACATCAAAGAGCAGGA		58	15256085	15256105	TTGCCATGGACTAGAAATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33678	FBgn0053678	FBtr0091658	3	1	1	60	2L	15071107	15071125	ACTACAAGAGGAGGTACCA		58	15071149	15071167	CTGTGCAACTTCTAGGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GABA-B-R1	FBgn0028924	FBtr0080697	1	1	1	83	2L	15026310	15026392	AGAGGAATTTCGACATCGAC		59	15026438	15026456	TGATATCCCTCCGGATAGC		59	NA	
Drosophila melanogaster	50	osp	FBgn0003016	FBtr0089866	1	1	3	82	2L	14600871	14601145	TTTGAGCTACCAAGGTCTG		59	14600807	14600825	ATGATGCTGGTGATGTCTG		59	NA	
Drosophila melanogaster	50	CG16876	FBgn0028876	FBtr0080592	1	1	1	60	2L	14047751	14047771	ATCATAGTAAAGCAGCCATCC		59	14047792	14047811	TCTCTGTGATCTTCTCAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31731	FBgn0028539	FBtr0080535	3	1	2	134	2L	13785507	13785800	TTTGCTTCCACTCAGATCG		59	13785897	13785916	AATAGTTGTAGAGCATGGCA		59	NA	
Drosophila melanogaster	50	CG9395	FBgn0032506	FBtr0080475	2	1	1	85	2L	13351826	13351937	CTCATTGGATCACTTAATCAGC		59	13351762	13351783	GCAAACTGAAGATAGTAGAAGG		58	NA	
Drosophila melanogaster	50	Pect	FBgn0032482	FBtr0080441	2	1	4	162	2L	13208447	13208467	GTGGACACATATCATTTGGTC		59	13208767	13209480	TCGAAGAACCTTCTTTCTCG		59	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090023,FBtr0090018	3	2	17	198	2L	12726932	12726950	TTATATCAAGAGCGTTGGC		57	12727112	12729198	GAAGTACGAGGTAACTTGG		57	NA	
Drosophila melanogaster	50	pdm2	FBgn0004394	FBtr0080392	3	1	2	138	2L	12673635	12680782	CCTGCCAACAAAGTTATGC		59	12684581	12684599	TCAGATTCTGTGGCATCTC		59	NA	Nonspecific
Drosophila melanogaster	50	bun	FBgn0010460	FBtr0080379	2	1	6	63	2L	12460637	12460658	GAATTGGCTATACGAGATTTGG		59	12460595	12460614	ATTAGGCACCATCACATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5435	FBgn0032431	FBtr0080387	1	1	1	68	2L	12430283	12430301	TATTGGGTCATCCACTTCG		59	12430149	12430167	AAATGAGCTTTACGCTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Aats-thr	FBgn0027081	FBtr0080333,FBtr0080332,FBtr0080331	1	3	3	63	2L	12104541	12104694	ATACTCGCAAGGAACTCAG		59	12104721	12104739	TTCTCCCAGAAGACATTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31867	FBgn0051867	FBtr0080224	1	1	1	60	2L	11144877	11144897	GTGGATATACCTGCTAATCCT		58	11144837	11144856	AAGATTGAGTCTCACAACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	piwi	FBgn0004872	FBtr0080166	2	1	1	83	2L	10983721	10983740	GAGAGCAATGGATGATTGTG		58	10983532	10983675	GATGAGTATCTTTCGGCGT		59	NA	
Drosophila melanogaster	50	CG7296	FBgn0032283	FBtr0080129	1	1	1	68	2L	10686460	10686478	GTGGACTGTACGGTTAGAC		59	10686410	10686429	CACAGTCATTTCTTATCGCT		57	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Pp2A-29B	FBgn0005776	FBtr0005088,FBtr0100533	3	2	2	98	2L	8367857	8367934	GATGATGTAGAGCACCTGG		59	8367995	8368014	CAGATCAACAAACTTCTCGG		58	NA	
Drosophila melanogaster	50	CG7795	FBgn0032019	FBtr0079610	3	1	2	103	2L	8317345	8317643	TTATCTGCAGATGTACACGG		59	8317261	8317279	ACTGGTTGGGATAATGTGG		59	NA	
Drosophila melanogaster	50	CG7179	FBgn0020880	FBtr0079497	2	1	1	60	2L	7776096	7776114	GGATGAGGATAAGGCTCAC		59	7776054	7776072	TATGGATTGGGACGAAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr28b	FBgn0045495	FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458	2	5	5	118	2L	7455130	7455213	ATTGTATTTCACGATCAGCG		58	7455031	7455049	TATTGAAGGTCTCACAGCA		58	NA	
Drosophila melanogaster	50	wg	FBgn0004009	FBtr0079433,FBtr0079432	3	2	2	101	2L	7313109	7313127	GAATCTGCACAACAACGAG		59	7314370	7314388	CAGGTCTTCACTGTACACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11266	FBgn0031883	FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638	2	7	7	117	2L	7036714	7036822	TTTATCACGTACCACAATGC		58	7036902	7036920	TATTCATGTCCAGTCGCTC		59	NA	
Drosophila melanogaster	50	Rab30	FBgn0031882	FBtr0079426,FBtr0079428,FBtr0079427	1	3	3	60	2L	7031918	7031936	AGCTACAAATCTGGGACAC		59	7031876	7031894	TAGTAGCTTTGCGTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nrv2	FBgn0015777	FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382	2	5	5	86	2L	6791574	6791593	ACTTTGATCTGGTACAAGGG		59	6791313	6791525	TACTTTGTACACCGCAAGG		59	NA	
Drosophila melanogaster	50	CG11050	FBgn0031836	FBtr0079292,FBtr0079293,FBtr0079291	2	3	3	105	2L	6616056	6616074	ATCCAAAGACGATAAGCGA		58	6616143	6616222	CTCGTATTCCTCAAACAGC		58	NA	
Drosophila melanogaster	50	CG9505	FBgn0031805	FBtr0079253	3	1	1	60	2L	6368501	6368519	CATTACCAGTCATGCATCG		58	6368543	6368561	CCAGTAGCTCGATGTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tkv	FBgn0003716	FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086	1	4	4	224	2L	5221390	5221470	TTCTCATGTGCAAGGTAGC		59	5221184	5221202	ATAAGCTAGCCACGATCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	jet	FBgn0031652	FBtr0110896,FBtr0079057	1	2	2	76	2L	4949020	4949038	ACTTAACAAGCTCACCGTC		59	4948962	4948980	AGTTCCCGATTTGGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ine	FBgn0011603	FBtr0077447,FBtr0077448,FBtr0077446,FBtr0077449	2	4	4	107	2L	4468743	4468761	GAAGACTGTCGAAGAACGT		59	4468589	4468672	ATACCCAGATGGCAAAGAG		59	NA	
Drosophila melanogaster	50	bowl	FBgn0004893	FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493	3	4	4	122	2L	3780466	3780484	CACCAAGTCGTACAATCTG		58	3780569	3781912	TGAATATACCTGTGATCCCT		57	NA	
Drosophila melanogaster	50	v(2)k05816	FBgn0042627	FBtr0077657	2	1	1	94	2L	3055305	3055386	CTCAAGGAGATTTGCAGTG		58	3055443	3055462	TCGATGATCTGTAGAGTGTG		58	NA	
Drosophila melanogaster	50	CG17221	FBgn0031500	FBtr0077654,FBtr0077655	2	2	2	85	2L	3041373	3041391	ACAGAAACTAGTGGAGCAG		58	3041495	3041513	TCTTCTCAAAGGCCTTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	syt	FBgn0004242	FBtr0077726	2	1	4	80	2L	2793377	2793395	ATGGAAAGGGTAAGAAGGG		58	2793258	2793334	TATCAGGCTGAACTTTCTCC		59	NA	
Drosophila melanogaster	50	oaf	FBgn0011818	FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780	3	4	4	104	2L	2495397	2495415	TATTACCTCCAACATTGGC		57	2495483	2495583	AGGATTTGAACCTCATTGC		57	NA	
Drosophila melanogaster	50	CG10874	FBgn0031395	FBtr0077848	1	1	2	120	2L	2191942	2191960	TGACCTATGTGAATGAGCG		59	2191069	2191859	TCATCACGATCTTTCAGGAG		59	NA	
Drosophila melanogaster	50	CG5440	FBgn0031331	FBtr0077923	3	1	1	80	2L	1334573	1334593	GCTTCATTTGTCTGGATATCC		58	1334635	1334653	GGGAGCAAATTGATAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dock	FBgn0010583	FBtr0078013,FBtr0078015,FBtr0078014	1	3	3	101	2L	831534	831552	TATTATGGAGCCATCACCC		58	831616	831722	GTCTCCCATGTTAGTCTCAC		59	NA	
Drosophila melanogaster	50	CG11376	FBgn0031216	FBtr0078103	2	1	1	99	2L	95215	95233	ATTGGACTTTCCTCAAGGG		59	95294	95366	GGGCAAATCAGACAAATTCTC		59	NA	
Drosophila melanogaster	50	CR41508	FBgn0085791	FBtr0114244	2	1	1	63	YHet	320309	320328	CAGAAACCATTTGACATGGT		58	320194	320284	CTTGATCATCCTTTACTGCT		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG41472	FBgn0084032	FBtr0111205	2	1	1	61	X	22035767	22035788	CTCTAACTCTTCAAACAATCGC		59	22035810	22035828	CAACAACCAGTTCAAACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12564	FBgn0031179	FBtr0077216	2	1	1	240	X	21306649	21306667	CATTGTGCCCAAATGTCAC		59	21306347	21306445	AATCTGCATCTTCATGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15460	FBgn0031104	FBtr0113006	3	1	1	108	X	20261540	20261558	GACTCGATCTTGGACATGG		59	20261394	20261468	TCTTTACGTCCAGCATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1631	FBgn0031101	FBtr0077297	1	1	1	93	X	20198737	20198814	ATAGCGAAGATGAGAGCTG		58	20198871	20198889	AAGTCGCTGTCTGATTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17068	FBgn0031098	FBtr0077341	1	1	1	60	X	20120079	20120097	GGTATCCCATGTACTCCTG		58	20120037	20120055	TTGAACATGAACTTCACGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12701	FBgn0031071	FBtr0074808,FBtr0074807	3	2	2	60	X	19675007	19675026	CAGTCACCCTATCATCAGTC		59	19674966	19674984	CGTACTCCTGCTTGATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14210	FBgn0031040	FBtr0074740	1	1	1	92	X	19510516	19510534	AAGAAGACCGTTAACCGAC		59	19510590	19510608	GTCCTTGATCTCCTTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7322	FBgn0030968	FBtr0074654	2	1	1	190	X	18750417	18750435	AATGTCACCCAATCTCTGC		59	18750245	18750263	GGATTAACGGAATTGACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dik	FBgn0030891	FBtr0074510	2	1	1	64	X	17980256	17980274	ACAGATGCTCTCCAATGTG		59	17980302	17980320	TGTCGAGGCTATCATACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8959	FBgn0030691	FBtr0074192	1	1	1	136	X	15677074	15677092	ATATCACCGATTGCGATCC		59	15676900	15676918	TAAATTACCAGATCGCGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9095	FBgn0030617	FBtr0074026,FBtr0112984	2	2	2	87	X	15039449	15039468	GGTTACGAGATGATAGGACG		59	15039308	15039399	ACTCCACAATCTCACAACG		59	NA	
Drosophila melanogaster	50	CG9941	FBgn0030514	FBtr0073843	1	1	1	88	X	13613452	13613470	AGTCCAACAACGTAAGCTC		59	13613317	13613335	GTAGCTATCACTGGAGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32652	FBgn0052652	FBtr0073671	2	1	1	89	X	12305612	12305687	AGCTAGGATAGTTGAAATGGTG		59	12305544	12305562	AAGCGCAACATTTGTATCC		59	NA	
Drosophila melanogaster	50	sbr	FBgn0003321	FBtr0073411	3	1	1	82	X	10728726	10728927	AACTGGTTAAGTTGGACGG		59	10728662	10728680	CTTCGTTTCGAGAAGACGT		59	NA	
Drosophila melanogaster	50	CG2889	FBgn0030206	FBtr0071450	3	1	1	134	X	10370033	10370051	ATTGAAGACCCACTTCCTG		59	10370149	10370224	ATGGTGCAGGTAAATAGCT		58	NA	
Drosophila melanogaster	50	Hk	FBgn0001203	FBtr0089804	3	1	2	98	X	10135765	10136883	TATGGAGGAGTTCAGTCGT		59	10135685	10135703	AGATTCTTGTACCGCAGTC		59	NA	
Drosophila melanogaster	50	CG12057	FBgn0030098	FBtr0071304	1	1	1	77	X	9086138	9086156	AACTCGTACAAGAACTCCG		59	9086197	9086215	ACTGACCAAATAGACGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ld14	FBgn0030090	FBtr0071349	1	1	1	113	X	9020331	9021112	TTGATTGCACAAACTGCTG		59	9020236	9020254	CTATCATCTCATCCCAGCC		58	NA	Nonspecific
Drosophila melanogaster	50	CG1885	FBgn0030066	FBtr0071268	1	1	1	73	X	8793915	8793933	ATCCGGATAAATATGCCGG		59	8793860	8793878	GAGATTGAGGGATTCAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12659	FBgn0040929	FBtr0071229	1	1	1	116	X	8485679	8485697	TTTAAGCGTCCGTTTACCT		59	8485522	8485599	ATTGAGCGTGAAGTAGGTG		59	NA	
Drosophila melanogaster	50	GIIIspla2	FBgn0030013	FBtr0071159	3	1	1	107	X	8052053	8052071	TGGAACGTACAACGATCTG		59	8052141	8052160	AAGAGATCATAGCGATTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1514	FBgn0029976	FBtr0071092	3	1	1	108	X	7808922	7809004	GAGTGATATTGACCTAACACTG		58	7809073	7809091	GTAGAAACCAATCAGAGCG		58	NA	
Drosophila melanogaster	50	CG14425	FBgn0029933	FBtr0100572	2	1	1	60	X	6979545	6979664	GCGAGACTATAAGACTGGC		59	6979503	6979521	CATTTCCGATGTGAAGTCC		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG3342	FBgn0029874	FBtr0070918	3	1	1	62	X	6421265	6421286	GGATGAGAAGGAATTCATAACG		58	6421224	6421242	CTGAGATAGTGCTCCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3566	FBgn0029854	FBtr0089869	1	1	2	192	X	6170573	6170591	TACGATGTGACCAAGTTCC		59	6170253	6170271	ATTCTCACCTAATTGGGCT		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Tre	FBgn0003747	FBtr0070802	2	1	1	88	X	5575442	5575527	TTTCACTGATGGAACACCT		58	5575579	5575597	CAAATAGGATTCCACGGGA		59	NA	
Drosophila melanogaster	50	CG12691	FBgn0029701	FBtr0070646	1	1	1	60	X	4160358	4160376	CAGATCACAGTAAGCCTCC		59	4160400	4160418	GATAGTTCTTCACTCGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ec	FBgn0000542	FBtr0070606	1	1	3	117	X	3730856	3735357	TTCTTTCAGACCTGCAAGG		59	3735438	3745002	AAAGTTCCTTTAGAGCGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13758	FBgn0040378	FBtr0070436	1	1	1	80	X	2470076	2470157	CACTGGAAAGCGAATATCAC		58	2470200	2470218	TCGTGAATCATCACAATGC		58	NA	
Drosophila melanogaster	50	Or2a	FBgn0023523	FBtr0070397	1	1	1	70	X	2141352	2141370	TTCTCTTATCTACGCAGGC		58	2141404	2141492	ATGTGAACCTCATGACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4325	FBgn0026878	FBtr0070342	3	1	1	74	X	1937691	1937709	TCGGACAATATACAAGCCG		59	1937443	1937653	TGATTGCTTTCTCCAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32806	FBgn0052806	FBtr0070301	2	1	2	60	X	1683900	1683919	GCACAGATAGCGTCTATCTC		59	1683940	1683960	CTTTGAATAGCTCGCATTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14628	FBgn0040365	FBtr0070180	2	1	1	60	X	1039733	1039752	GAATTGAACTCACCAGTGGA		59	1039775	1039793	GGAAGGTTTCTCACAAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40878	FBgn0085531	FBtr0113944	1	1	1	73	U	9833676	9833694	TTACAAGGTGTGGAGTGTG		59	9833731	9833749	GCTTTAAACTAATGCCGGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40376	FBgn0058376	FBtr0113876	1	1	1	60	U	1972943	1972963	GGTAATTAATGGACCTTGGAC		58	1972984	1973003	GGAATGTACCATTAGCTCAC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40108	FBgn0058108	FBtr0113794	3	1	1	65	U	1340749	1340768	ACCAAATGGTACTAGTTCCG		59	1340796	1340814	GACGTGGTTACATCAAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41327	FBgn0085617	FBtr0114061	1	1	1	96	U	1165866	1165884	TCGTCATCATTCTCAACCA		58	1165944	1165962	CCGACTAGGATGTATTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-3385a	FBgn0082962	FBtr0113577	1	1	1	61	3R	1422156	1422175	GGGTTCATGTACAGTATGCA		59	1422114	1422132	ACGGCATTGGGTTATATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bxd	FBgn0020556	FBtr0083342	1	1	4	80	3R	12579443	12579463	TATTACACAACTCCAGAGGAC		58	12570417	12579402	TGGGAAGTGATAATGTGCTC		59	NA	
Drosophila melanogaster	50	CR41470	FBgn0084050	FBtr0111305	1	1	1	60	3R	217928	217946	ACAATATCCAAGTGCCTCG		59	217886	217904	TTGTCTGATTAGCTGCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Map205	FBgn0002645	FBtr0085876	2	1	2	113	3R	27887173	27887191	AAACACGTACGAGCTAGTG		59	27884778	27884797	ATTAATACCTTCCGGTGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15555	FBgn0039839	FBtr0085764	2	1	1	94	3R	27092045	27092063	ATTTGGAAGGTGGAGTTCC		59	27092121	27092202	TTGCCACTTAGATTGTGGG		59	NA	
Drosophila melanogaster	50	CG15554	FBgn0039820	FBtr0085736	1	1	1	86	3R	26951979	26952383	GCTGTTAACCCTAATGGCA		59	26952433	26952451	CCGTAGACATAGGCTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33920	FBgn0053920	FBtr0091924	3	1	1	66	3R	26870354	26870373	GATTTCATTAGGCCCTTCAC		58	26870250	26870268	TTTCGATCACGAGATCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	spdo	FBgn0011716	FBtr0085651	2	1	1	133	3R	26303881	26303979	CTACATGATAGCACACCTCG		59	26304075	26304093	AACTATAGCTCCTGTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634	1	4	5	103	3R	26212311	26213196	AGATTTCAAGTGCTCCCTG		59	26212226	26212244	TGATCTCCTCCTGGATCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG31038	FBgn0051038	FBtr0085495,FBtr0085498,FBtr0085499,FBtr0085494	1	4	6	242	3R	25705388	25705406	TTACTCTGACTAGCTGCCA		59	25723101	25723119	CTTCCACATCACTCAGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7829	FBgn0039703	FBtr0085531	2	1	2	65	3R	25643103	25643121	CATGGACTATGACATCGGT		58	25643005	25643077	GCCTTTACCTTTCTAGATAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11951	FBgn0039656	FBtr0085403	2	1	1	80	3R	25062309	25062406	CCGAACAGGACTTAAACTG		58	25062247	25062265	AAGATTACCCACTGATCGG		58	NA	
Drosophila melanogaster	50	CG11880	FBgn0039637	FBtr0085373,FBtr0085372,FBtr0085371	1	3	3	73	3R	24951436	24951454	ATCACTGGATGTGACACTC		58	24951560	24951578	TTCATAGTGTCCCAGACGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14528	FBgn0039611	FBtr0085329	3	1	1	60	3R	24702601	24702620	ATGCATCTGAACATCAACTC		58	24702640	24702661	ACACCTCTCCATATACATTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12879	FBgn0039540	FBtr0085218	3	1	1	103	3R	23520157	23520932	AAGAAGTGTGACCATAGCG		59	23520999	23521017	GTGTTCAGGATGAGATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp97E	FBgn0039465	FBtr0085083	2	1	2	89	3R	22788880	22788900	ATCTTCTTCAGCTTCACTGAG		59	22788165	22788733	AGCCAGGACTTCTAATTTAGAG		59	NA	
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100338,FBtr0100337,FBtr0100335,FBtr0100340,FBtr0100339,FBtr0085093,FBtr0100336,FBtr0100334,FBtr0085092	1	9	9	85	3R	22700512	22700596	CAGTGGATAAGGCTATCCT		57	22700445	22700466	CTTGTCCAGGTTATAAATGGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6425	FBgn0039449	FBtr0085047	3	1	1	163	3R	22541891	22541910	TCAGAGCTAAGGGATACTCC		59	22541682	22541700	AATTGGTACTCGCTGAAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14354	FBgn0039376	FBtr0084905	1	1	1	242	3R	21641477	21641495	GAATATTGCCCAGAAGGCT		59	21641701	21641774	TTTGTCTGTGAACCAACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LpR1	FBgn0066101	FBtr0113480,FBtr0084926,FBtr0084925,FBtr0113481,FBtr0113479,FBtr0113482	2	6	6	132	3R	21567974	21567992	TCGATGAACTTCGAGAACC		59	21567719	21567878	CTATGACGGGTGAGTACTC		58	NA	
Drosophila melanogaster	50	CG5112	FBgn0039341	FBtr0084878	3	1	1	60	3R	21318433	21318453	AGCTCTTCAAGAAGATACTGG		59	21318475	21318493	ATCAGACCATAAATGGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13653	FBgn0039288	FBtr0084804	2	1	1	60	3R	21021866	21021884	GCCAGGGATACTGATTACG		59	21021908	21021926	TTAGACCCACATCTCCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mld	FBgn0083077	FBtr0111013,FBtr0111012	3	2	2	291	3R	20445546	20445564	GTATAAGCCAAGGCTACAG		57	20445819	20445902	CATTTCCACTGTTGATGGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	nAcRalpha-96Aa	FBgn0000036	FBtr0084619	3	1	1	141	3R	20231141	20233047	GTTACATGGTGGACTTGAG		57	20231018	20231036	CTGTAGAACTTCTCGTTCC		57	NA	
Drosophila melanogaster	50	CG10221	FBgn0028475	FBtr0084467	2	1	1	80	3R	19580925	19581005	AATCAAGGAGTCACCTTACAG		59	19580865	19580885	ACGGTAATCATGTACAAGTCC		59	NA	
Drosophila melanogaster	50	CG4467	FBgn0039064	FBtr0084390,FBtr0110801	1	2	2	80	3R	19057612	19057630	CTTTCCAGTCACCTATGTG		57	19057481	19057569	ACATTGAAGGTTACATCCAC		57	NA	
Drosophila melanogaster	50	CG7031	FBgn0039027	FBtr0084313	2	1	1	125	3R	18630085	18630506	ACGTTAATTTGCAGATGCC		59	18630592	18630613	CCATATTGTGATACAATGGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6937	FBgn0038989	FBtr0084266	3	1	1	195	3R	18411077	18411158	GAAGGTTGTCAATAAGGCC		58	18411317	18411335	TTCCACCAGTAAGTTGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	oa2	FBgn0038980	FBtr0100322,FBtr0084260	2	2	2	83	3R	18335918	18338472	GAAATTGCGCATCATTACC		57	18338518	18338537	TTAAATGTCATCGCACAGAG		58	NA	
Drosophila melanogaster	50	CG7059	FBgn0038957	FBtr0084221,FBtr0084219,FBtr0084220	3	3	3	140	3R	18217574	18217648	AGCACATTGAGGGAATCTC		59	18217750	18217770	GCCTAATATACTCCTGATCCC		58	NA	
Drosophila melanogaster	50	CG5802	FBgn0038863	FBtr0084017,FBtr0113259	1	2	2	80	3R	16965292	16965420	GTATTTACAGGTGAGGCCA		58	16965463	16965482	AGCTATCAGCGATAAATGGG		59	NA	Nonspecific
Drosophila melanogaster	50	Rlip	FBgn0026056	FBtr0084002	2	1	1	81	3R	16844665	16844684	GATGTCTCACCGACTAATGG		59	16844727	16845176	GGGCACATACTTTATCAGCT		59	NA	
Drosophila melanogaster	50	Hs6st	FBgn0038755	FBtr0083846	1	1	1	80	3R	15764172	15831968	TGTCAAGATCAGGTATGCG		59	15764110	15764128	TGGGAGCTCATTATAAGCG		59	NA	
Drosophila melanogaster	50	CG17836	FBgn0038661	FBtr0083701,FBtr0113246,FBtr0083702,FBtr0083703,FBtr0083700	2	5	5	92	3R	14751507	14751633	AATGATGATCGGTTCGAGG		59	14751689	14751707	CTCTACGATGTCTGCATGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14291	FBgn0038660	FBtr0083724	1	1	1	60	3R	14737817	14737836	GCTCAGTACATGACCATCTC		59	14737776	14737796	CTAGCTCCTTCAGCATTAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PKD	FBgn0038603	FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592	3	4	4	203	3R	14131625	14132352	AGCAGCTCACTGAATATCC		59	14131440	14131458	CTTGTGCGTATTGTACTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	beat-IIb	FBgn0038494	FBtr0083411	1	1	1	188	3R	13064759	13065208	AAGTTGTGGAATTTCCGGA		59	13059233	13059251	CAACCGTTCGAATGTACTG		58	NA	
Drosophila melanogaster	50	CG9624	FBgn0038213	FBtr0082897	1	1	1	60	3R	10054525	10054544	CTGAGAATGCCTTAAACCAG		58	10054484	10054502	AGAAAGTCCACCTGATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or88a	FBgn0038203	FBtr0082890	2	1	1	84	3R	9936370	9936388	CAATATTGCCAGCGAACAC		59	9936435	9936510	CCAGCTGCATTATTTCAGTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14368	FBgn0038162	FBtr0082859	1	1	1	165	3R	9451183	9451201	TCAAGTCTTGTGTCTAGGC		58	9451036	9451054	CATCCTTCTCGTCCTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8476	FBgn0038127	FBtr0082781	3	1	1	60	3R	9045604	9045624	TTCTACCTATATGTAGCCGGA		59	9045564	9045583	TGATCACGTCCAATAGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14380	FBgn0038124	FBtr0082733	1	1	1	81	3R	9014573	9014591	AATTATTCCAGGACCCGTC		59	9014700	9014718	TAGAAGCGCAGTTAAACAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7242	FBgn0040494	FBtr0082690	3	1	1	88	3R	8787956	8788448	CATGGAAAGCATTCACACG		59	8788500	8788518	GTACAGTGACACCCTTCAC		59	NA	Nonspecific
Drosophila melanogaster	50	CG34055	FBgn0054055	FBtr0100000	3	1	1	62	3R	8341044	8341062	AATCGACACCACAGTAACC		59	8341000	8341018	CCAAGATCTGGAGTTTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HisCl1	FBgn0037950	FBtr0082471,FBtr0082472,FBtr0082470	1	3	3	80	3R	7614292	7614373	GTACTCAACAGGTAACTTCAC		58	7614415	7614433	TAGGTGTGGAACAAATGGT		58	NA	
Drosophila melanogaster	50	Tsp86D	FBgn0037848	FBtr0082288	3	1	1	208	3R	6695117	6695135	CATACTGGAGATGTCGCTG		59	6695307	6695382	TGAAGTACTCGTTCTTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12592	FBgn0037811	FBtr0082233	3	1	1	249	3R	6165648	6165666	TGAAGAAGGTAATTCAGCG		57	6165943	6165961	CTCATCGGAACTCTTTAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3909	FBgn0027524	FBtr0082172	2	1	1	122	3R	5869964	5870036	TATGATGTAACCCACTCCG		58	5870122	5870140	TTTCACGCTGTTATCACTG		58	NA	
Drosophila melanogaster	50	Fps85D	FBgn0000723	FBtr0082053,FBtr0082051,FBtr0082052,FBtr0082054	2	4	4	90	3R	5194239	5194257	GATGTGGGAGATCTTCTCC		58	5194104	5194186	CATACGATATCCCGTATCGA		58	NA	
Drosophila melanogaster	50	CG9740	FBgn0037669	FBtr0081984	3	1	1	60	3R	5083910	5083996	ACAGGCTGATTATCCATAGG		58	5083869	5083888	AATTCAGCGGTTAGATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10101	FBgn0037501	FBtr0081531	3	1	1	172	3R	3233943	3233961	AGCTTAACGGATAAGTGGG		59	3234097	3234175	AGAAAGTGGATGTTCTGGG		59	NA	
Drosophila melanogaster	50	rn	FBgn0003263	FBtr0081594	1	1	2	71	3R	3102468	3102486	GGCAATGGCATATCATCCT		59	3101753	3102433	AATCTTGGTGTCCTTCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14610	FBgn0037477	FBtr0081609	2	1	1	60	3R	2969555	2969573	GAATGTCTCAGTGAGGTGG		59	2969513	2969532	GGGTCTCTGTGATAGATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1943	FBgn0037468	FBtr0081637,FBtr0081636,FBtr0081635	3	3	3	64	3R	2902726	2902744	CCAATATCTTCTCGGAGCC		59	2902771	2902790	GTTCTGTTGGTTGTACTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	djl	FBgn0037463	FBtr0081631	3	1	1	86	3R	2886703	2886776	AAAGAAATTCTCAAGCCCG		58	2886824	2886844	CTTGATCACATGAATCACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	UbcD6	FBgn0004436	FBtr0078849	3	1	1	91	3R	776250	776269	GATGGTGGAATATGCTTGGA		59	776116	776196	CTCAGCAGTGACTGTATGG		59	NA	
Drosophila melanogaster	50	CG40298	FBgn0058298	FBtr0111169	1	1	1	60	3L	23720645	23720663	TTTAAATGCGCTACTGTGG		58	23720687	23720705	GCTTCGTTACGGAATACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33771	FBgn0053771	FBtr0091772	2	1	1	75	3L	22642565	22642639	AGTCAACTCTTTGTTACCG		57	22642677	22642696	TGTTAGCTATGGTTATCGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5104	FBgn0037009	FBtr0078209	3	1	1	195	3L	20514317	20514522	TCATTACGCAGATCAACGA		59	20514681	20514774	ATGAGAAAGCAGGTACTGG		58	NA	
Drosophila melanogaster	50	CG8004	FBgn0036920	FBtr0074915	2	1	1	66	3L	19921025	19921043	TCTACAAAGAGGTCACAGC		58	19920977	19920995	TTCTGCATGTGATTGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9368	FBgn0036890	FBtr0074942,FBtr0074943,FBtr0074944	3	3	3	261	3L	19595820	19595838	GATCTTCGATGCCATATGC		58	19596063	19596081	TTAGTCCATCAGTCGAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9619	FBgn0036862	FBtr0075014	2	1	1	127	3L	19278386	19278404	ATAGGGATGTCCTCATGTC		57	19278154	19278172	TTTATGATCGGCTCATCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32204	FBgn0052204	FBtr0113429	2	1	1	81	3L	18923742	18923761	CGTACTGATATACTCGTGGC		59	18923240	18923700	TATTTGCACACCGTAGTAGAC		59	NA	
Drosophila melanogaster	50	Cat	FBgn0000261	FBtr0075058	1	1	1	104	3L	18820346	18820461	CTACTTTGCTGAGGTGGAG		59	18820529	18820547	GAGTAGGAGAACAGACGAC		58	NA	
Drosophila melanogaster	50	Eip75B	FBgn0000568	FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149	3	4	4	111	3L	17948399	17948417	GAGATGGATATCGTTGGCT		58	17948141	17948324	TGAGTATTCCGATCTGCTG		58	NA	
Drosophila melanogaster	50	NUCB1	FBgn0052190	FBtr0075171	3	1	1	67	3L	17792073	17792092	GGACAAGGTCTATCAGAGTG		59	17792025	17792043	TACGTTCCATTTCCTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Abl	FBgn0000017	FBtr0112790,FBtr0075357	3	2	2	95	3L	16621830	16621848	GAGTATCTTCTCAGCTCCG		58	16621680	16621771	ACCCTCGTATCTCAAACTG		58	NA	
Drosophila melanogaster	50	CG5389	FBgn0036568	FBtr0075446	3	1	1	203	3L	16091482	16091656	TAGTGCTGGAGGTATTCCA		59	16091823	16091841	AGAAATCCGACTTGACCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG6498	FBgn0036511	FBtr0075562	1	1	1	80	3L	15567175	15567262	GAGATGCAGCAGTACTCAG		59	15567305	15567324	ATAAGAGGAATCCAAAGGCG		59	NA	
Drosophila melanogaster	50	CG32847	FBgn0052847	FBtr0075639	1	1	1	60	3L	15114733	15114752	TACTTTCGTAATGGACACCA		58	15114772	15114793	GGTGTCTAGACATATGTTACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11552	FBgn0036465	FBtr0075669	1	1	1	60	3L	15035314	15035335	CGATAAGTACTTGGAATCATCG		58	15035275	15035293	ATAGAGCAGATTTAGGCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsc70Cb	FBgn0026418	FBtr0075771,FBtr0075772,FBtr0075773	3	3	3	200	3L	14032908	14032927	GATGATATCGACGTCTCGTC		59	14033087	14033172	GTTAAAGACCTGCTCAATAAGC		59	NA	
Drosophila melanogaster	50	CG8750	FBgn0040812	FBtr0075802	3	1	1	97	3L	13835968	13835987	CTTAAGATTCCAAATCGGCG		59	13835890	13835909	AAAGGACCTAGTATCCTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ImpL1	FBgn0001256	FBtr0075842	2	1	2	175	3L	13375920	13376013	GTAGTTTGCATCGTAGCAG		58	13376151	13376170	GAAATTGGAGTGTTTCCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7600	FBgn0064766	FBtr0076165	3	1	1	141	3L	11205852	11205928	CATATCACAGGCTATGGACC		59	11206032	11206050	AATTCTCGGAATTGAGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6511	FBgn0035923	FBtr0076570	3	1	1	118	3L	8717225	8717301	GGGCTCAAGAGGAATACAG		59	8717383	8717401	CAGTTTCACATACAACGGC		59	NA	
Drosophila melanogaster	50	eIF4E-3	FBgn0035860	FBtr0076701	1	1	1	111	3L	8223296	8223371	TAAGCTATCCCTTTGGACG		58	8223446	8223464	CACCTGGTACTGGATTTCC		59	NA	
Drosophila melanogaster	50	CG32372	FBgn0052372	FBtr0076793	2	1	1	108	3L	7518496	7518514	ATTGGAACATCTCCAGGTG		59	7518584	7518665	CAACAAAGTCATTTCCAAGGG		59	NA	
Drosophila melanogaster	50	CG13293	FBgn0035677	FBtr0077050	3	1	1	139	3L	6080581	6080599	TGTCTACACCAAGTTGTGG		59	6080699	6080781	CGCTGGTTCTTAAGTAATAGTG		58	NA	
Drosophila melanogaster	50	CG5568	FBgn0035641	FBtr0077025	1	1	1	102	3L	5865429	5865498	TTTCTACCCGTGGATAGCT		59	5865564	5865582	TAGTCAAGCTAAACACGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15020	FBgn0035543	FBtr0073298	3	1	1	92	3L	4424893	4424976	GAGTTCAACATATCGAAGCTG		59	4425028	4425048	CAGCTGAATACAGTAATCCAC		58	NA	
Drosophila melanogaster	50	tipE	FBgn0003710	FBtr0073220,FBtr0073219	2	2	2	120	3L	4191775	4191793	CCAACTCGGAGATCAACTC		59	4191877	4192200	CTCAAGTTTCCTTGCACTG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14989	FBgn0035495	FBtr0073207	1	1	1	171	3L	4090078	4090096	AAACACAATCCTGAGACCG		59	4090361	4090379	CTTCATCACCCTCATCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12605	FBgn0035481	FBtr0073166,FBtr0073167	3	2	3	286	3L	3961786	3961804	CAAGTCACCTCTCAAATCG		58	3959843	3959861	AAATCACCTTGCCATCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ubi-p63E	FBgn0003943	FBtr0073179,FBtr0073177,FBtr0073178	3	3	3	90	3L	3901649	3901668	AAGACAAGGAAGGAATTCCC		59	3901578	3901596	ATGTTGTAATCGGACAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32276	FBgn0047135	FBtr0073107,FBtr0073106	3	2	2	60	3L	3198409	3198429	AACGAAAGAGGGTCAATATCC		59	3198369	3198387	GACCACAAAGATGAACAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12011	FBgn0035257	FBtr0072764	1	1	1	104	3L	1694644	1694734	GCATTCTCTACGACTCCTG		59	1694802	1694820	ATTTCTTGAGGTGAAGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	n-syb	FBgn0013342	FBtr0072816,FBtr0072819,FBtr0072818	2	3	5	178	3L	1636902	1636921	TGCATAGAGTACCTTCATCC		58	1635683	1635953	CCTGTTCCTTGTTCTTGTC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7879	FBgn0035235	FBtr0072827,FBtr0072826	1	2	2	77	3L	1562995	1563981	CTTTCATCGCTTTCAGCAC		59	1562936	1562957	CCTGGATCTCCATTAGTTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	5SrRNA:CR33404	FBgn0053404	FBtr0086396	1	1	1	62	2R	15634918	15634936	AATACATCGGTTCTCGTCC		59	15634874	15634892	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3356	FBgn0034989	FBtr0072262	3	1	1	81	2R	20088407	20088484	ATTCTTTATGGTAACCACGG		57	20088525	20088546	GTAGTGTTTCTCATAGTCTTCG		58	NA	
Drosophila melanogaster	50	CG17662	FBgn0034884	FBtr0072106	1	1	1	145	2R	19493670	19493688	AGTTCCTCATTACCTGCTG		58	19493491	19493561	GAAGAGACCCGAAATACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5398	FBgn0034882	FBtr0072071	3	1	1	258	2R	19490578	19490597	CTTTCCTTGGTTACTTCCTG		58	19490818	19490900	GTTAGTTGAATCCCTGCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9826	FBgn0034784	FBtr0071894	2	1	2	138	2R	18729521	18729540	ATTGGTAGTTCCCTGAACTC		59	18729641	18729740	GATTGTGCTTATCAGCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CycB	FBgn0000405	FBtr0071913,FBtr0071914,FBtr0071912,FBtr0071911	2	4	4	85	2R	18693056	18693179	CACTAAAGTTACAGTCAAGTCC		58	18692992	18693010	ACTTCTTCGACAGATTGCT		58	NA	
Drosophila melanogaster	50	PpD5	FBgn0005778	FBtr0071806	3	1	1	60	2R	17929910	17929930	GGATTTGAATCGGGTATATGG		58	17929870	17929890	CAACTTGATGCTATATCGTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LBR	FBgn0034657	FBtr0071711,FBtr0071712	3	2	3	109	2R	17608823	17609371	GGTTTCCGAGGTATCATCG		59	17609444	17609462	CGGAGCTTGTGTTAAATGC		59	NA	
Drosophila melanogaster	50	Obp56b	FBgn0046880	FBtr0086480	1	1	1	96	2R	15586700	15586780	CTAAGCGAACTAGTAGCGG		59	15586622	15586640	CACTGGCAGCAATATTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7744	FBgn0034447	FBtr0086535	3	1	1	81	2R	15340706	15341059	CTAAAGGTTTACAGAGAACGAC		58	15341101	15341119	CGTGCAGGACTTTATTCAC		58	NA	
Drosophila melanogaster	50	CG11961	FBgn0034436	FBtr0086519,FBtr0086520	2	2	2	80	2R	15249503	15249524	CTTACTTCATCTACTTCTCGTG		58	15249565	15249644	AATTTCCGTTGGGTTTCTC		58	NA	
Drosophila melanogaster	50	CG15088	FBgn0034381	FBtr0086646,FBtr0086645	1	2	2	82	2R	14616063	14616081	GATTTCTACGGTGTCTCCT		58	14615934	14616018	CGATTAACTCCGTAAATCCA		57	NA	
Drosophila melanogaster	50	edl	FBgn0023214	FBtr0086652	1	1	1	60	2R	14555462	14555480	GAACTGCCACAGAAATTCC		59	14555420	14555439	ACATATCGAGACTCATCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15605	FBgn0034196	FBtr0087002	3	1	1	61	2R	13014416	13014434	GTAAAGAGGGACAAGGCAG		59	13014373	13014393	AAATCCCTAAAGTATCGAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tef	FBgn0086350	FBtr0087014	3	1	1	147	2R	12942843	12942862	ATCCGCAAGTTAAAGATGGA		59	12942657	12942675	TCGGGTTATCTGTGATTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	fidipidine	FBgn0025519	FBtr0087185	2	1	1	93	2R	12151032	12151116	AAAGATGAGCTCGATCTGG		59	12150957	12150975	TAGGATCGAGATCAATGCG		59	NA	
Drosophila melanogaster	50	krimp	FBgn0034098	FBtr0087189	1	1	1	60	2R	12127001	12127020	CATCATTACTCGGATCACCA		59	12126960	12126980	AAGATACGCATCATATCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mrj	FBgn0034091	FBtr0113084	1	1	5	142	2R	12093318	12093419	GAAGTGAAGAAGGCATATCGA		59	12093067	12093085	TAGATTCTGCGCTTACGTG		59	NA	
Drosophila melanogaster	50	CG6145	FBgn0033853	FBtr0087687,FBtr0087685,FBtr0087686	1	3	3	60	2R	9426355	9426492	AGCTAGTGACCTTTAAAGATGG		59	9426316	9426335	CAGACGATAAAGTCAATCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	drk	FBgn0004638	FBtr0087693,FBtr0087697,FBtr0087698,FBtr0087696,FBtr0087694,FBtr0087695	3	6	6	92	2R	9385227	9385305	GAATCACGACTGGTATTACG		58	9385154	9385172	CTGATGCGTATCAAGAAGG		57	NA	
Drosophila melanogaster	50	CG30038	FBgn0050038	FBtr0088057	3	1	1	122	2R	7784025	7784108	CAATCGAGATTTGTCGTACAG		59	7783923	7783942	TCATATTGTTGAACTGCACC		58	NA	
Drosophila melanogaster	50	CG9003	FBgn0033639	FBtr0113067,FBtr0113068,FBtr0088088,FBtr0113069	1	4	4	80	2R	7531791	7531810	CATTAATTTGCACTCGTGCT		59	7531671	7531750	ATCTCCATGAGATTTGGACAG		59	NA	
Drosophila melanogaster	50	Tapdelta	FBgn0021795	FBtr0088153	2	1	1	289	2R	7258214	7258291	ACAACAAGTACCAGGTGAG		59	7257943	7257962	GAAGGCATCCTCTACTTAGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13227	FBgn0033589	FBtr0088107	2	1	1	190	2R	7122902	7122920	CTCTATTCAGCTGCTGGAC		59	7123074	7123092	GAGTTCTCTGGAAACCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12942	FBgn0033569	FBtr0088236	3	1	1	80	2R	6782935	6782953	TGACTCTAAACGACGATGG		59	6782994	6783068	CTATTCCATTGGATTTCAGCTG		59	NA	
Drosophila melanogaster	50	CG30020	FBgn0050020	FBtr0088235	3	1	1	96	2R	6775818	6775836	CCATTCACAAGCACAAGTG		59	6775895	6775988	AATTTGGGAAGATTGCTGTG		59	NA	
Drosophila melanogaster	50	CG12343	FBgn0033556	FBtr0088247	2	1	1	60	2R	6710464	6710484	GAAGAAGCGTAAAGACAATCC		59	6710424	6710442	TCTAGCTGTTTGAGCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trsn	FBgn0033528	FBtr0088306	1	1	1	80	2R	6367090	6367173	GTACTACAGATACTCCGATCAC		59	6367031	6367049	GCCTCCAGGTAAATAACCA		58	NA	
Drosophila melanogaster	50	CG11777	FBgn0033527	FBtr0088273	3	1	1	81	2R	6356435	6356716	CCATTAAGCACACTGATCG		58	6356760	6356779	TAGGTAATGAAGAACTGGCT		58	NA	
Drosophila melanogaster	50	CG1776	FBgn0033441	FBtr0088497	1	1	1	81	2R	5608218	5608239	CAGAAGTTGTGAACTTTGACTG		59	5607468	5608176	CCTGAGATGAGCACATAGC		59	NA	
Drosophila melanogaster	50	CG33758	FBgn0053758	FBtr0091759	3	1	1	93	2R	5341208	5341227	TTGCTCGTAACAATAACGTG		58	5341083	5341154	TCAATTACCTTGAAGGGACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	ana	FBgn0011746	FBtr0088559	3	1	1	81	2R	4963416	4963434	TTTAAGTCTCATCTGGCGA		58	4963903	4963921	TCTTCATGGAGTTGCTACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13749	FBgn0033353	FBtr0088655	3	1	1	61	2R	4821025	4821043	TAATCGACGATTCCATTGC		57	4821068	4821086	ATCATGTCCGTCGTATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14747	FBgn0033306	FBtr0088732	1	1	1	80	2R	4468410	4468540	CAAGGGAATAACAACCGAC		58	4468348	4468366	TTCATCCATGGGATAACCA		57	NA	
Drosophila melanogaster	50	Lcp3	FBgn0002534	FBtr0088743	2	1	1	290	2R	4323102	4323120	CTAATGTGGAGGTCAAGGA		58	4323374	4323392	TCACTTAGTTCTTGCTGGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Vps28	FBgn0021814	FBtr0088825	1	1	1	73	2R	3967245	3967263	TACAAGGTGGCCTTTAAGC		59	3967190	3967208	AGCCGGAATTTCTTAACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30382	FBgn0050382	FBtr0088894	2	1	1	250	2R	3718957	3719037	CTCTACCAAGTGGAGTACG		58	3718437	3718455	TACTTGTAGCGGAAGTTGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG7881	FBgn0033048	FBtr0086033	2	1	1	108	2R	1850680	1850698	CTTATTCTTGGCCATCGTC		58	1850528	1850609	GTTGTACTCAGGAAAGTCCA		59	NA	
Drosophila melanogaster	50	snoRNA:Me28S-C2645a	FBgn0082938	FBtr0113556	1	1	1	60	2L	20647821	20647842	CCATGATGAAATCGTTAGATGG		59	20647860	20647881	CTACTATCGAGATGAATCAGTC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His2A:CG33859	FBgn0053859	FBtr0091863	1	1	1	60	2L	21528622	21528641	GAATTATTCCGCGTCATCTG		59	21528664	21528682	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34136	FBgn0083972	FBtr0110944	2	1	1	80	2L	21097208	21097226	CTGTCGTTTCCCTACTGTG		59	21097270	21098593	ATTGTTGGTGCTCATTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ppk13	FBgn0053508	FBtr0091448	1	1	1	84	2L	21087935	21087955	CCCAAGCTCAATATGTATTCG		58	21087734	21087889	GTATAAAGACCGTGGCCTC		59	NA	
Drosophila melanogaster	50	CG10664	FBgn0032833	FBtr0081300,FBtr0081301	3	2	2	130	2L	19959683	19959761	ACATCTTCGTGTACGATGAG		59	19959854	19959872	CTTGTTCTCGTAGTCCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Lar	FBgn0000464	FBtr0081260,FBtr0112800	2	2	2	80	2L	19729579	19729600	GCTATCAGTATTATGTCGTGGA		59	19729639	19729729	CATCCGTGACCTTAAATTCAC		59	NA	
Drosophila melanogaster	50	CG17549	FBgn0032774	FBtr0081221	2	1	3	80	2L	19388087	19388107	ATCGATCCGTATCTATTCCAC		58	19387924	19388046	ACCAGTTATAGCTTGTTGGT		58	NA	
Drosophila melanogaster	50	gammaTub37C	FBgn0010097	FBtr0081228	3	1	1	73	2L	19185373	19185393	CCGTTCTCATAGACTTAGAGC		59	19185212	19185338	CTGGTTGTACAACTTGGAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG10623	FBgn0032727	FBtr0081190	3	1	1	60	2L	18956717	18956735	AGGAACAGTACCTTAGCGA		59	18956675	18956693	CCCATGATCAGTGGAAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10600	FBgn0032717	FBtr0081120	2	1	1	107	2L	18838148	18838516	GGGAGAAGATTCCTTCCTC		58	18838059	18838077	GATCCTTCGACTTGAAGGA		58	NA	
Drosophila melanogaster	50	Grip71	FBgn0032705	FBtr0081099	2	1	1	91	2L	18710304	18710322	CAAAGTCTTTGTCCTCCAG		57	18710377	18710450	CTTAAGGTCTGTTGCAGTG		58	NA	
Drosophila melanogaster	50	Cyt-c-p	FBgn0000409	FBtr0080889	1	1	1	98	2L	16722073	16722091	TGAGAAGGGAAAGAAGCTG		59	16722153	16722171	ATCAGACCATGCAGATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pkaap	FBgn0040079	FBtr0080826	2	1	1	81	2L	16290138	16290157	TTCGCTGACTTTCTAAAGTC		57	16290199	16290288	GATGAGTGGTGGAATTATCTC		57	NA	
Drosophila melanogaster	50	CG12448	FBgn0028857	FBtr0080796,FBtr0080795	3	2	2	60	2L	15942014	15942032	TGCGAAAGGAACATATGCT		59	15942053	15942136	TTACTTAGCAGATCAGATTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18125	FBgn0028917	FBtr0080642	1	1	1	60	2L	14346189	14346207	CCCATCGATCTTCAAGGAG		59	14346147	14346168	CAGTTAATCCACAATAGTACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33640	FBgn0053640	FBtr0091617	1	1	1	66	2L	13528173	13528191	TAACTATGCGCAGTTCCTG		59	13528221	13528420	CTCGTCTATGTAGGTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bun	FBgn0010460	FBtr0080378	1	1	6	167	2L	12482643	12482663	CAGTCGTCAATATGGATTTCG		59	12458211	12477120	ACTTGACCAGATCCATTGC		59	NA	
Drosophila melanogaster	50	CG12307	FBgn0032370	FBtr0080266	1	1	1	67	2L	11651627	11651645	CAGAGCTCTGTGAGTTGTC		59	11651578	11651596	ATCGCGAGATTGTTAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14070	FBgn0032313	FBtr0080177	2	1	1	60	2L	10900943	10900961	GGATACCGGAAGAGAAGTG		59	10900901	10900921	TCTTAATGATCCGGTAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6700	FBgn0032305	FBtr0080187	3	1	1	105	2L	10839999	10840072	CAGGATTTGACTGTCCAGG		59	10839912	10839930	ACTGATTGAACTCCTCGTG		59	NA	
Drosophila melanogaster	50	CG18302	FBgn0032266	FBtr0080095	1	1	1	81	2L	10535693	10535777	GACCATTAGTGTTTATTGCCAG		59	10535819	10535837	TTATGTATCAGGCTTCGCC		59	NA	
Drosophila melanogaster	50	CG33301	FBgn0053301	FBtr0079935	3	1	1	60	2L	10050133	10050151	CAAACCTGCTAACCAAGTG		58	10050175	10050193	GAATACGCCTTCTTGTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	zf30C	FBgn0022720	FBtr0079865	2	1	1	259	2L	9761256	9761274	ACAAGGAACTGCTCTACTG		58	9761497	9761580	GTGCGTCTTGAGAATACCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	Nckx30C	FBgn0028704	FBtr0079926,FBtr0079928,FBtr0079927	3	3	3	140	2L	9733529	9742389	AACGTGGTATCAATGACAC		57	9733407	9733427	CCACAAACATATAGATCACCC		58	NA	
Drosophila melanogaster	50	CG9582	FBgn0032090	FBtr0079778	3	1	1	69	2L	9024655	9024673	AAGTGCAGGATTCAAGGAC		59	9024604	9024622	TAATCGTGCTTATGGTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sema-1a	FBgn0011259	FBtr0110930,FBtr0079691	3	2	3	96	2L	8660491	8660509	CCTCTGTAGTCATCGAGGA		59	8660568	8660660	TCTTTGGGTTGATCGTACTG		59	NA	
Drosophila melanogaster	50	fos28F	FBgn0013442	FBtr0079585	3	1	1	225	2L	8180885	8181062	CAAACCGTTCACATTTCGG		59	8181251	8181269	TATAGGAGCTCGTACCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12560	FBgn0031974	FBtr0079548	1	1	1	247	2L	8009190	8009268	CTTTGTTCTAACGCTACGT		57	8008863	8008881	AGTGCTGTAGACTTAAGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13791	FBgn0031923	FBtr0079521	2	1	1	68	2L	7578286	7578304	CAATTGCAATACCAGCGAC		59	7578236	7578254	CCTTAGTGGTTCTGTCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sip2	FBgn0031878	FBtr0079360,FBtr0079357,FBtr0079359,FBtr0079358	2	4	5	64	2L	6961828	6961911	CTTCCGAAATCAAGCATGTG		59	6961783	6961801	AATTTGAGGTACCTTCGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Atac1	FBgn0031876	FBtr0079362	3	1	1	62	2L	6959506	6959524	AGCGATATGCTCCTTATGC		59	6959462	6959480	ATCCATGTACTCGGATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32829	FBgn0052829	FBtr0079370	3	1	1	70	2L	6916036	6916054	AAGAAGCACAAGAAGGGTC		59	6915984	6916002	TCCTTGATGTACTCGTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nhe3	FBgn0028703	FBtr0112942,FBtr0079318,FBtr0079317	1	3	3	80	2L	6682192	6682211	GACGTAAACCTATATGCGCT		59	6682075	6682149	TTGAATGGCTCCACTAAGG		59	NA	
Drosophila melanogaster	50	Oatp26F	FBgn0051634	FBtr0079327	3	1	1	81	2L	6627591	6628523	TTACTTGGGCATCTACTACAC		59	6627530	6627549	ATAGATGAGCAGCAGTTGTC		59	NA	
Drosophila melanogaster	50	Oatp26F	FBgn0051634	FBtr0079327	1	1	1	80	2L	6627591	6628523	TTACTTGGGCATCTACTACAC		59	6627531	6627549	TAGATGAGCAGCAGTTGTC		59	NA	
Drosophila melanogaster	50	CG31643	FBgn0051643	FBtr0079182	1	1	1	103	2L	6040770	6040790	GGCTACCAAATAGACTTTGTG		58	6040855	6040932	ATTGCCACTTTGGTTATGC		58	NA	
Drosophila melanogaster	50	CG3058	FBgn0031601	FBtr0077435	2	1	1	73	2L	4403403	4403521	GACCGAGTAGTTGTAATACG		57	4403557	4403575	CTGTACATGACCTCATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aph-1	FBgn0031458	FBtr0077716	3	1	1	61	2L	2766696	2766773	CTGGCTGATATGAGTGGTC		59	2766797	2766816	ACGAAGAATAGCTCAGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33124	FBgn0053124	FBtr0113449	2	1	1	80	2L	2208538	2208618	CTGATAGCGAGTTTCATTTCG		59	2208478	2208496	CAGGGAATATTGGGTTCCA		58	NA	
Drosophila melanogaster	50	CG7337	FBgn0031374	FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012	2	5	5	130	2L	1937464	1937482	CACAATACGGAGAATGGGA		59	1937575	1938518	CTATGGCCTACATTCTCCAG		59	NA	
Drosophila melanogaster	50	a5	FBgn0011294	FBtr0077922	2	1	1	60	2L	1329313	1329391	GAGTTACTTAGGATCAAGTACG		57	1329412	1329430	GAGTATAGGTCTTGCCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13946	FBgn0040725	FBtr0078004	2	1	1	77	2L	776761	776779	GAACTCTCCAACAGTACCA		58	776820	776838	TGATGAGGAAACGTCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0196	FBgn0027279	FBtr0077355,FBtr0077356,FBtr0112508,FBtr0077357,FBtr0077354	2	5	5	81	X	21898312	21898331	TATTTCGGTGCATGTATCCA		59	21898374	21898508	GAGTGCAATCTTAGCAAACC		59	NA	
Drosophila melanogaster	50	CG7990	FBgn0030997	FBtr0074694	2	1	2	104	X	19093490	19093870	ACTATGGCCAGATCAACAC		59	19093404	19093422	ACAGTTCATGGAAGCTAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9992	FBgn0030744	FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309	1	5	5	93	X	16277004	16277022	AGTCCTACTTCCGAGACTG		59	16276867	16276947	CAAAGTTGTGCAAGTCCTG		59	NA	
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	2	7	7	80	X	16269992	16270010	ATCACCATGTATCGAAGCG		59	16270054	16270134	TCCATTTCACCTCGTTCTC		59	NA	
Drosophila melanogaster	50	CG9503	FBgn0030598	FBtr0073974	1	1	1	122	X	14815296	14815314	AGCTGTCCAAGATTGACTG		59	14815076	14815094	AGTTAAGAACAGAGCTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15721	FBgn0030438	FBtr0073715	3	1	1	160	X	12867627	12867645	ATACAACGTTTGCAACGAC		59	12867768	12868494	GCCAATCATTCTGCTTTCTG		59	NA	
Drosophila melanogaster	50	Klp10A	FBgn0030268	FBtr0073478,FBtr0073475,FBtr0073477,FBtr0073476,FBtr0073479	2	5	5	152	X	11027593	11027611	TAATGGAAAGGTGCAGGAC		59	11027383	11027477	AGAAGATCGAAGACCTTGC		59	NA	
Drosophila melanogaster	50	l(1)G0232	FBgn0028341	FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407	3	6	6	85	X	9524046	9524066	GCCGTCGGATTATATTAATGC		59	9523916	9524001	TCTTTGGTAATGGACCTTGAG		59	NA	
Drosophila melanogaster	50	CG34449	FBgn0085478	FBtr0112753	1	1	3	82	X	9227647	9230967	TTACAGTAAGCTATCGCCC		58	9227583	9227601	GTTCACAGTCCTGACTCTG		59	NA	
Drosophila melanogaster	50	Pat1	FBgn0029878	FBtr0070945	3	1	1	118	X	6489264	6489355	CATTGATATAAGCCTGCGTC		58	6489433	6489454	GCGCATACTTCAAATACTTCTC		59	NA	
Drosophila melanogaster	50	CG15473	FBgn0029719	FBtr0070689	3	1	1	125	X	4547952	4548047	TGGAAATCTAAGCCAGCTG		59	4547845	4547863	GTCATAATATCGCCGAAGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Actn	FBgn0000667	FBtr0070344	1	1	3	80	X	1922776	1924258	GGATCCAGATGATCTCCAG		58	1922714	1922732	AAGCAGTGATAGTACGAGG		58	NA	
Drosophila melanogaster	50	CG40196	FBgn0058196	FBtr0113830,FBtr0113829,FBtr0113831	2	3	3	120	U	1092307	1092325	CAGATCTAAGTTGCGATCC		57	1092152	1092224	TAAAGAGAATTCACTGCTCG		57	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156	2	9	10	80	4	103363	106347	CCTAAGATGGGCTTAACTCG		59	106387	106408	CATATCTGAACTTAGCATTGGG		58	NA	
Drosophila melanogaster	50	CG7816	FBgn0039714	FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921	1	6	6	80	3R	25690544	25690624	GGGCGATAATCAAGATCCT		58	25690482	25690501	ATCGTGAAGATCAGTATGCC		59	NA	
Drosophila melanogaster	50	Trc8	FBgn0039668	FBtr0085431,FBtr0085430,FBtr0085432,FBtr0085429	1	4	4	92	3R	25325968	25326046	GCTATCAGGAAATGTATTCCG		58	25325896	25325914	AACGATCCTGAACGTACAG		59	NA	
Drosophila melanogaster	50	CG1647	FBgn0039602	FBtr0085326	1	1	1	184	3R	24646212	24646230	GAAGATCTACGAGCTGGTG		59	24646431	24646519	GATCAATTAATCTTGCGGGC		59	NA	
Drosophila melanogaster	50	CG14259	FBgn0039483	FBtr0085104	3	1	1	80	3R	22920754	22920772	CAATCTGACTGACCTGGTG		59	22920939	22920958	CAGCTAAAGTCTTTCTTGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	5PtaseI	FBgn0051107	FBtr0084793	1	1	1	60	3R	20868261	20868281	ACTGAAATACTGTCCCTACTC		58	20868221	20868239	TAACTTTGAACTGGTCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	1	5	6	80	3R	20045369	20045388	ATGAACATCTACAACGAACC		57	20025660	20045326	TGGATTCACGGTAAATGAC		57	NA	
Drosophila melanogaster	50	Pk92B	FBgn0014006	FBtr0083818,FBtr0083819	2	2	2	81	3R	15708427	15708448	GATATGATCCTGGAGATGACTG		59	15708487	15708574	CGTACTCGTACTCGATATTAGC		59	NA	
Drosophila melanogaster	50	CG6184	FBgn0038725	FBtr0083802,FBtr0083800,FBtr0083801	2	3	3	88	3R	15479276	15479357	CCAAGGAATTTAAGGACTACG		58	15479208	15479226	GTACACCAGTTCGTACTCC		59	NA	
Drosophila melanogaster	50	Dad	FBgn0020493	FBtr0100160,FBtr0083394,FBtr0083393	1	3	3	81	3R	12894608	12894696	CTTTGAAACCAATAGGGCTG		59	12894740	12894758	AATGCTGAAGTAGTCGACG		59	NA	
Drosophila melanogaster	50	CG7518	FBgn0038108	FBtr0082697,FBtr0082696	3	2	2	114	3R	8825634	8825652	GATTACGAGCGGTTACCTC		59	8825729	8825805	GTTAGCCATTAATATGGCGC		59	NA	
Drosophila melanogaster	50	SelR	FBgn0037847	FBtr0082296,FBtr0082294,FBtr0082292	3	3	6	166	3R	6692389	6692408	CAACAAACACTACGAGAAGG		58	6689539	6692261	GTATACGTTCTGGTATGCTG		57	NA	
Drosophila melanogaster	50	CG2702	FBgn0037540	FBtr0081786	2	1	1	137	3R	3840564	3840582	CGTTGATAGGAATACGGCA		59	3840683	3840761	GTAGTGAAGGGTTCGTGAC		59	NA	
Drosophila melanogaster	50	CG33324	FBgn0053324	FBtr0081727	2	1	1	72	3R	2272958	2272976	TTGGATGCTCCCAATACTG		59	2273012	2273030	TTTCCTTGGGTGACTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11373	FBgn0040679	FBtr0078657	2	1	1	128	3R	1786221	1786523	GCACACGATAGGATTTGGA		59	1786060	1786079	TTAGACGTCAAAGAATCCGT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG2051	FBgn0037376	FBtr0078670,FBtr0078669	1	2	3	80	3R	1613835	1613948	GTGTTACTTCTTGAGCTACG		58	1613774	1613792	TATACGGTGGTGTAACCAG		58	NA	
Drosophila melanogaster	50	CG31547	FBgn0051547	FBtr0078765,FBtr0078764	3	2	2	143	3R	1317155	1317277	AATATAATACCGGTGCGGG		59	1317030	1317048	TGTCAACGCATTTATTCCG		58	NA	
Drosophila melanogaster	50	CG12000	FBgn0037314	FBtr0078805,FBtr0078806	3	2	2	77	3R	1183098	1183116	CAAGGACAGGGACTTTACC		59	1182968	1182986	GTATCGCGGTAGTAAAGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12163	FBgn0037303	FBtr0078823	3	1	2	163	3R	1065334	1069571	AACGAGAAATATGTCCATCG		57	1064896	1064915	GAGGCTGAGTATACTTTCAC		57	NA	
Drosophila melanogaster	50	CG7140	FBgn0037147	FBtr0114546	3	1	1	60	3L	22020820	22020838	GAACCGCATAATAGTGGAG		57	22020778	22020796	TTGAAAGGCCTTGTAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	chb	FBgn0021760	FBtr0089462,FBtr0089460,FBtr0089461	1	3	3	60	3L	21172075	21172093	CAATGTGAACGATGTGACC		59	21172116	21172135	GCTAGATTCGAAAGATTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234	1	10	10	72	3L	20826943	20826961	CAAATGCGTCAAACTGGAC		59	20827129	20827147	GTTGCGTTTGAGTATGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14187	FBgn0036938	FBtr0074868	3	1	1	61	3L	20105625	20105645	AAGGACTTCTTCATGTACCTG		59	20105584	20105602	AATCCTGACATCGTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075008	2	1	11	85	3L	19297287	19297305	TAACCCTGACTGTTCTCGA		59	19297154	19297172	GGTGATCTTGCTATTGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6902	FBgn0035899	FBtr0076657	1	1	1	60	3L	8484483	8484501	TCTGTGCGTGTTATTTGAC		58	8484441	8484459	TCTCGCAGACATGATATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nmo	FBgn0011817	FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758	2	6	6	142	3L	8040250	8040352	GTCTTCGATCCGGATAAGC		59	8040457	8040476	AAATCAGCCGTATACTGACG		59	NA	
Drosophila melanogaster	50	CG15011	FBgn0035518	FBtr0073244	2	1	1	105	3L	4257248	4257321	AACTCTGTCGCATAACTCC		59	4257161	4257179	CTGGTGTCATTGGGTAGAC		59	NA	
Drosophila melanogaster	50	CG10339	FBgn0034972	FBtr0072288	1	1	1	60	2R	19966351	19966370	AAAGTTCTACATCACACCCA		58	19966310	19966328	CACCTGGCTATCGTTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16739	FBgn0034505	FBtr0086286	2	1	1	62	2R	16229792	16229810	CTGTACTTCACCAATTGGC		58	16229836	16229854	ATAGAGCAATCCCAAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spin	FBgn0086676	FBtr0089592,FBtr0089591	1	2	5	80	2R	12020077	12020098	GACCTTCCTTCATCTATCTAGG		58	12020138	12020350	CAAACTTGTACGAGATGTCG		58	NA	
Drosophila melanogaster	50	CG34365	FBgn0085394	FBtr0112590,FBtr0112587	3	2	4	90	2R	11306982	11307000	AGGATTACAGTCACAGCAG		58	11307054	11308196	TCGGAGAAATCGGATACTG		58	NA	
Drosophila melanogaster	50	Mdr49	FBgn0004512	FBtr0087801	3	1	1	81	2R	8832634	8832654	TGACTTTCAGCTTAAGGAAGG		59	8832508	8832593	TCTGGTTGAGTATCTGAACAG		59	NA	
Drosophila melanogaster	50	CG13226	FBgn0033594	FBtr0088108	2	1	1	60	2R	7132093	7132115	GTTATAACTATGGATACCCGGTC		59	7132134	7132153	CTGGGTCTGTAGTAGTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	3	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421093	TAGTAAGGTAGCAAAGTAGGGA		59	NA	
Drosophila melanogaster	50	CG1667	FBgn0033453	FBtr0088479	2	1	1	85	2R	5731846	5731865	GCTACCTCAAACTTTCACTG		58	5731910	5731983	GGTAACATTATTCTTGTCCTCG		58	NA	
Drosophila melanogaster	50	gcl	FBgn0005695	FBtr0088710	1	1	1	91	2R	4615200	4615218	ATTATACCCAAGGAGTGGC		58	4615273	4615361	TGAGGACTACAATCCTCCT		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111090,FBtr0089020	1	2	60	161	2R	3249350	3249368	AAAGTACCTGGTATTGCCC		59	3238787	3249225	TTAAATCCCACAGGCTCTG		59	NA	
Drosophila melanogaster	50	vlc	FBgn0010633	FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039	1	4	4	105	2R	1591797	1591817	CCAGATATCTCCGAAGATACC		58	1591884	1591954	TATTGTGGCAAAGACCCTC		59	NA	
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445	3	8	8	80	2L	20877196	20877215	TCTGCAAGAAGATACCAGTG		59	20877070	20877156	AAATATACTGGGTACTCAGTCC		58	NA	
Drosophila melanogaster	50	drl	FBgn0015380	FBtr0081195	2	1	1	80	2L	19207435	19207454	ATGAGATGGAGCACTATCTC		58	19207497	19207639	CCATAATGGTGAAGAGCTC		57	NA	
Drosophila melanogaster	50	ppk	FBgn0020258	FBtr0080638	3	1	1	132	2L	14379783	14379858	CAGGGCTATAAGGTCTTTCTC		59	14379671	14379689	GCAAATTGTCAGTGGACAC		59	NA	
Drosophila melanogaster	50	Nup107	FBgn0027868	FBtr0080121	1	1	1	60	2L	10733517	10733535	GAAGTGATGTTCAAGTCGG		58	10733475	10733494	TGGATATTTCATCTGCCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34183	FBgn0085212	FBtr0112376	3	1	1	107	2L	9890438	9890456	TCAGACATAGTGGATGAGC		58	9890286	9890304	TTTGGAAGCGGAGATACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)05714	FBgn0010607	FBtr0079050,FBtr0079051	1	2	2	60	2L	4970752	4970772	GGTGAACTTGTCAAAGATGAG		59	4970712	4970732	CTTTGGGTGAAATTATGGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3558	FBgn0025681	FBtr0077645,FBtr0077644	1	2	2	80	2L	2996428	2996512	AAGCTTAGGTCCCTTTCTC		58	2996555	2996574	AAGTGGAGATTGACGTACAG		59	NA	
Drosophila melanogaster	50	aph-1	FBgn0031458	FBtr0077716	2	1	1	60	2L	2766906	2766924	TCCACATAGGCTATGTGGT		59	2766947	2766966	GCATTGAGCAGAGTTATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eno	FBgn0000579	FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905	1	4	5	83	2L	1727657	1727675	TAAATTTGTGCAGATCCGC		58	1726602	1726620	GAGTCGTAGATTTGACGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3164	FBgn0025683	FBtr0078153,FBtr0078155,FBtr0100379,FBtr0078154	1	4	4	80	2L	123790	123872	TATTACGATCCTATCATTCCCG		59	123731	123750	TAGGACTTTAGCGAGTACCA		59	NA	
Drosophila melanogaster	50	CG1314	FBgn0031134	FBtr0077286	3	1	1	60	X	20739335	20739356	CATATCGCCTAATCCTAATGAG		58	20739296	20739316	CGCAAGTTCTATTTCGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Frq1	FBgn0030897	FBtr0074545,FBtr0100239	2	2	2	149	X	18055313	18061670	ACGGACACATACTTCACAG		59	18062480	18062498	GAGCGATGCGAATTTACTG		59	NA	
Drosophila melanogaster	50	CG33173	FBgn0053173	FBtr0074093	1	1	1	82	X	15671322	15671400	GGATAGTGATCCGGATAGC		58	15671446	15671464	CATGGATCCAGGTGTTCTC		59	NA	
Drosophila melanogaster	50	Rbp1-like	FBgn0030479	FBtr0073790	1	1	1	161	X	13278471	13278489	GTGTCGAAATGTCATCAGG		58	13275072	13278346	GTGATCTATAGCGTCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2861	FBgn0029728	FBtr0070732	3	1	2	89	X	4695260	4695278	TACCTCTAGAAACACCCAC		57	4694585	4695207	TAAAGAGCGTACCTAGTGC		58	NA	
Drosophila melanogaster	50	usp	FBgn0003964	FBtr0070346	3	1	1	77	X	1933764	1933782	ATATTGTCGGAGCTGAGTG		59	1933705	1933723	TATGATGGCCTTCAAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14631	FBgn0029552	FBtr0070172	3	1	1	112	X	906252	906270	CTGGATACAGCTTCATTCG		57	906345	906364	ATTATTCATCCGGTCACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NfI	FBgn0042696	FBtr0089141	1	1	1	80	4	296250	296271	ACTTTAAGAGGCTGTATGATCG		59	294528	296210	AGGGTGAAATTCATCCTGTC		59	NA	
Drosophila melanogaster	50	CG3509	FBgn0038252	FBtr0082969	2	1	1	60	3R	10489500	10489518	ATAATCTCGGAGCTGATCG		58	10489542	10489560	AGTTTCGACCCATCATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6753	FBgn0038070	FBtr0082669	1	1	1	60	3R	8467005	8467280	CTATGCCTCATCGGATGTG		59	8466963	8466981	AAGGAGGTAGGCTAAGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Art1	FBgn0037834	FBtr0082304	3	1	1	103	3R	6613266	6613284	TAATCACGGTTGTCAAGGG		59	6613094	6613199	GTAGAACAGGCAGTAACCC		59	NA	
Drosophila melanogaster	50	CG11872	FBgn0037806	FBtr0082229	1	1	1	217	3R	6132865	6132883	AATGGTAGTCTGCCTACAG		58	6133219	6133237	TAGCAGAAGATGCAGAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2616	FBgn0037512	FBtr0081738	2	1	1	63	3R	3548886	3548904	CCTCCAGATTTACGAGAGC		59	3548931	3549428	ATCCCTGATTTCAAGGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Snap25	FBgn0011288	FBtr0111143,FBtr0111142	2	2	2	81	3L	24251668	24251687	AATATGGCATTGGATATGGG		57	24251731	24290793	CATTAGATTCACCCTTCCG		57	NA	
Drosophila melanogaster	50	Mkp3	FBgn0036844	FBtr0075035,FBtr0075036	1	2	2	60	3L	19062619	19062638	CACTACTCACAAGATTTGGC		58	19062374	19062596	GCGCTTCCTCTATAAACTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	stv	FBgn0086708	FBtr0075806,FBtr0113425,FBtr0075808,FBtr0075809,FBtr0075807	3	5	5	80	3L	13475399	13475417	CTGCTTAAGCTAGACACCA		58	13475460	13475544	CTGAATGCATTTGATAGCCT		58	NA	Nonspecific
Drosophila melanogaster	50	CG32112	FBgn0052112	FBtr0075917,FBtr0075915,FBtr0075916	2	3	3	90	3L	12737833	12737915	CAGAAGCTATTTAGATCCTGC		58	12737967	12737985	TATCACATTTCAGGCCCTC		59	NA	
Drosophila melanogaster	50	mfr	FBgn0035935	FBtr0076566	3	1	1	82	3L	8904067	8904134	ATCGCGTTTAATGGAACTC		58	8904003	8904022	CGACCAACATAGATCATAGG		57	NA	
Drosophila melanogaster	50	CG17352	FBgn0035880	FBtr0076675,FBtr0076676,FBtr0100664,FBtr0076674	2	4	5	78	3L	8347400	8347418	CTACTACATTCGACTGCGT		59	8347282	8347359	ATTCAAGTAGTTGAACACGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr65Ax1	FBgn0086900	FBtr0112465	1	1	1	121	3L	6141022	6141040	TATGAAATTCGCCATCGTC		57	6140851	6140938	TGGTTTCAACTGCATATGAG		58	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG1275	FBgn0035321	FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906	2	4	4	69	3L	2253685	2253787	GTATGGCAACTCCATTCTG		58	2253634	2253652	GTGGGTAAGCTTCAGAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Ipk1	FBgn0050295	FBtr0113368,FBtr0071515	1	2	2	110	2R	16764119	16764771	TTTCCCGGTGAAATTATGGT		59	16765150	16765168	CTTCTGGCTCTGATTGGAG		59	NA	
Drosophila melanogaster	50	CG9001	FBgn0034175	FBtr0087060	1	1	1	99	2R	12887566	12887586	GATGATCCACTAGCAATACTC		57	12887434	12887505	TGTAGGCCACTTGTATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30156	FBgn0050156	FBtr0086184	1	1	1	80	2R	2869299	2869319	AACTGGAAGTAGAAATCGAGG		59	2869182	2869257	GATTATCCCTCCAACTCCG		59	NA	
Drosophila melanogaster	50	vlc	FBgn0010633	FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039	2	4	4	106	2R	1591797	1591817	CCAGATATCTCCGAAGATACC		58	1591885	1591955	TTATTGTGGCAAAGACCCT		59	NA	
Drosophila melanogaster	50	CG10641	FBgn0032731	FBtr0081185	1	1	1	76	2L	18986729	18986747	AAGTGGTCAACGTCTACAC		59	18978769	18986690	TGTATTGAAGGTCTTCTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31751	FBgn0086909	FBtr0081092,FBtr0081093	3	2	2	76	2L	18682373	18682446	GATGCTGCTTTACTTGGGA		59	18682483	18682504	CAGAGTAATACTTTCCTGTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5693	FBgn0040989	FBtr0081026	2	1	1	256	2L	18006796	18006814	TTAATCCGGGCTACATTGG		59	18007034	18007052	ACATCTCCAAAGGACTCCT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	chif	FBgn0000307	FBtr0114469,FBtr0080838,FBtr0080839	2	3	3	66	2L	16352002	16352020	CATTTGCCACTAGATGCAC		59	16351954	16351974	CTGATATGTTCCTATAGCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PRL-1	FBgn0024734	FBtr0080857,FBtr0080856	3	2	2	60	2L	16248748	16248831	GGAGCTAAAGAAGAACAATGTC		59	16248709	16248729	GGTATTATAGCTAGGTTCGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6614	FBgn0032369	FBtr0080267	1	1	1	80	2L	11645651	11645670	TAATATCTGTTTGCCTGCCA		59	11645535	11645609	AGACGATTGAGATGGTACAG		58	NA	
Drosophila melanogaster	50	cdc14	FBgn0031952	FBtr0079492	2	1	1	81	2L	7806708	7806728	AAGATAGTTCACTACACCTCC		58	7806514	7806668	GGTAGATTATTGCATACGAACC		59	NA	
Drosophila melanogaster	50	mio	FBgn0031399	FBtr0077835	2	1	1	81	2L	2219093	2219168	GATATGCTACAGGAGTGAGC		59	2219212	2219230	TATAAAGCGATCCAGCTCC		58	NA	
Drosophila melanogaster	50	tRNA:CR31382	FBgn0051382	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR32123:Psi	FBgn0052123	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR32357	FBgn0052357	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG12061	FBgn0040031	FBtr0113683,FBtr0113682	2	2	3	116	XHet	22997	23088	TACTCAACCGACCAAACTG		59	23168	23186	GCCTCATACCACATAACCA		59	NA	
Drosophila melanogaster	50	CR34311	FBgn0085340	FBtr0112509	2	1	1	60	X	20254970	20254988	ATTCAATCAGTGGATGGAC		57	20254928	20254949	CACTATATTGGAAGGTAAGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	FucTC	FBgn0044872	FBtr0111136	2	1	1	76	X	22411742	22411760	GGACATTTACGGAAACTGC		59	22411147	22411165	AGTCAGTGTCCAACATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34019	FBgn0054019	FBtr0100074	2	1	1	98	X	21296900	21296918	TTTCTCCGAATTTCTCCAC		57	21296672	21296838	AATCATTTCACGTGAGGAG		57	NA	
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210	2	5	8	86	X	21247686	21250626	ACATGACGCTTATGAAATGG		58	21250675	21250693	CAAAGTGGCCATAGAAGGT		59	NA	
Drosophila melanogaster	50	sol	FBgn0003464	FBtr0089677,FBtr0089679	2	2	4	194	X	21223907	21223925	GCGGAAGTACAACTTTACC		58	21224083	21225131	GATCATGCATATGCTGCTG		59	NA	InUTR
Drosophila melanogaster	50	CG1532	FBgn0031143	FBtr0077268	1	1	1	64	X	20898775	20898793	TAACTATGGAGTGAGCAGC		58	20898013	20898031	CCTTGGAGTGTATGGTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	hydra	FBgn0031128	FBtr0077294,FBtr0077295	2	2	2	94	X	20542568	20542708	CCTTAAAGTAGAAGTCGTGGT		59	20542494	20542513	TATGGGTATGATTGGGTTGG		59	NA	
Drosophila melanogaster	50	CG11943	FBgn0031078	FBtr0074798,FBtr0074799	2	2	2	80	X	19747834	19747916	GATCTGGTCTATAGCACGC		59	19747959	19747978	CTTGGAGTTCATGAAGTCGA		59	NA	
Drosophila melanogaster	50	CG11943	FBgn0031078	FBtr0074798,FBtr0074799	3	2	2	81	X	19747833	19747915	GGATCTGGTCTATAGCACG		59	19747960	19747978	CTTGGAGTTCATGAAGTCG		58	NA	
Drosophila melanogaster	50	Cdc42	FBgn0010341	FBtr0074751,FBtr0074752	1	2	2	63	X	19592047	19592066	GCTCATCTCGTATACAACCA		59	19592092	19592110	ATAGTTGTCGAACACCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33253	FBgn0030992	FBtr0074668	3	1	1	251	X	19079999	19080017	TTACTGTGACGGTAGATGC		59	19080232	19080321	ATACGTCCTTGATCTCCAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Cyp18a1	FBgn0010383	FBtr0074609,FBtr0074610	2	2	2	83	X	18584393	18584411	CTTCGATGGCAAGAATCAC		58	18584225	18584243	GTGGTCTTGATGGTTTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Bx	FBgn0000242	FBtr0074598,FBtr0074597,FBtr0074599	3	3	3	179	X	18461161	18461553	GACTACTTGAGATTGTTTGGC		59	18464621	18464639	TATCTTGTTCTCGCACAGG		59	NA	
Drosophila melanogaster	50	CG15048	FBgn0030935	FBtr0074595	1	1	1	63	X	18415013	18415031	AACATCGAGCTTAATCCCG		59	18415058	18415076	TAACCTTGAAACCCACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-his	FBgn0027087	FBtr0074594	2	1	2	100	X	18412108	18412868	ATGAGAATTGAAGTGCTGAC		58	18412929	18412949	AAGTCATACCTCATCGATAGG		58	NA	
Drosophila melanogaster	50	CG15044	FBgn0030928	FBtr0074627	1	1	1	64	X	18385667	18385685	TGTGAACCACTACGATGAC		59	18385621	18385639	GATAGCTCATGAGCACCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wupA	FBgn0004028	FBtr0074526,FBtr0074523	3	2	7	80	X	18004585	18004603	ACGCGTATACAGTTTGGAG		59	18000951	18004543	TTGAGATCGTTGATCTCTTGG		59	NA	
Drosophila melanogaster	50	Taf8	FBgn0022724	FBtr0074514	2	1	1	62	X	17996728	17996802	GTTTCCTTTAATTGCCTGCA		59	17996827	17996845	TCTGTGGGATTTAAAGCGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG8915	FBgn0030833	FBtr0074447	3	1	1	124	X	17138054	17138072	CAGGATCGTGGTAAGTCAG		59	17137887	17137966	TGCATTGTCTATTCATGCG		58	NA	
Drosophila melanogaster	50	CG32571	FBgn0052571	FBtr0074325	3	1	1	145	X	16625902	16625921	TGTCCAAGAAGTCTAATGCC		59	16626028	16626153	ATCATAGTTGGCCTGAATGG		59	NA	
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	2	7	7	80	X	16269992	16270010	ATCACCATGTATCGAAGCG		59	16270054	16270134	TCCATTTCACCTCGTTCTC		59	NA	
Drosophila melanogaster	50	Dsp1	FBgn0011764	FBtr0089259,FBtr0089263,FBtr0089261,FBtr0089262,FBtr0089260	1	5	5	66	X	16230990	16231008	ATGAGACGGTGATATTCGC		59	16231038	16231132	TTGTCCACCATTGTCTTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33251	FBgn0053251	FBtr0074223	1	1	1	60	X	16205781	16205801	CGTCTAGAACCACTTCTAGAG		59	16205823	16205841	CGAGAAGTGGATCTAGTCG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3632	FBgn0030735	FBtr0112988,FBtr0112990,FBtr0112991,FBtr0112989	1	4	4	92	X	16195705	16195724	CTATATCCTGTCCAGATGGC		59	16195779	16195858	TTTCCTCACGTAGCTTGTG		59	NA	
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	3	9	9	111	X	15788792	15788878	AGTTACCGAATATGGCGAG		59	15788952	15788971	TTTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	Myb	FBgn0002914	FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169	1	4	5	82	X	15749875	15749893	GGTCTATAATCGCGTTGGA		59	15749747	15749829	GTCCAAGTTGACTCTTGTG		58	NA	
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	2	7	7	82	X	15717700	15717788	GATCCATTGCTTGAGACTG		58	15717832	15717852	TCGTAGAGATCTTTAAGTCCC		58	NA	
Drosophila melanogaster	50	PGRP-LE	FBgn0030695	FBtr0074183	3	1	1	132	X	15696001	15696020	CTGCCTGTTAAATATGTGGT		57	15695601	15695619	TGTACGCAATGTCATTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(1)G0168	FBgn0027287	FBtr0074042	2	1	2	249	X	15381365	15381383	GACTTGGAGTATGAGGGAC		58	15381661	15397628	GCTCTTCATTCTGCAACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	rab3-GEF	FBgn0030613	FBtr0073993	1	1	2	90	X	14989268	14991682	CTAAACTCCTTGAGACTTCCC		59	14991734	14991752	AACTAATCGTTCCTTGGGC		59	NA	
Drosophila melanogaster	50	CG14414	FBgn0030571	FBtr0073931,FBtr0073930,FBtr0073932	3	3	3	220	X	14475704	14475797	ATATGATGAAACGCAGAAGC		58	14475980	14475998	CGCGATCCTTGTTAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	dmrt11E	FBgn0030477	FBtr0073768	2	1	1	101	X	13263266	13264044	CATGGAAGAATACAAACAGCG		59	13264107	13264125	ATGACATGGTTCAGTTCCG		59	NA	
Drosophila melanogaster	50	HDAC4	FBgn0041210	FBtr0100425,FBtr0073797	3	2	3	149	X	13159366	13159384	GAAGACGATAGCCATACAG		57	13159061	13159185	GATAGAGTTTGCATCGAGAG		57	NA	
Drosophila melanogaster	50	CG15742	FBgn0030462	FBtr0073733	1	1	1	60	X	13151943	13151961	CGTTCATCATGCATGACAG		59	13151901	13151919	TTGGTGAGCTCTTCAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32644	FBgn0052644	FBtr0073714	1	1	1	80	X	12862153	12862270	TCAGTGGACAAGAGTTATTCG		59	12862312	12862330	CAACATCAACAAGCTTCGT		58	NA	
Drosophila melanogaster	50	Pkcdelta	FBgn0030387	FBtr0073645	2	1	1	113	X	12345381	12345399	GATGACGATGTTGACTCCA		59	12345476	12346267	AAAGAACAAGTGGCTCTCC		59	NA	
Drosophila melanogaster	50	CG2467	FBgn0030355	FBtr0073594,FBtr0073595	1	2	2	139	X	11806290	11806308	TACACTACCAACGGATTGC		59	11805446	11805534	TTGAGATCAACCTGCATGG		59	NA	
Drosophila melanogaster	50	FucT6	FBgn0030327	FBtr0073620	3	1	1	116	X	11601775	11601793	TTTCTTACCTCTGGCATGC		59	11601612	11601632	CATATACTCCTCCACACTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11203	FBgn0030249	FBtr0073385,FBtr0112978	3	2	2	185	X	10811065	10811139	GTAATCATTCCACAGGAGTG		57	10811285	10811305	GGATAGATCGTCCTTATTTCC		57	NA	
Drosophila melanogaster	50	CG32694	FBgn0052694	FBtr0071410	3	1	4	62	X	9893285	9893303	CAAACGAACGATTGGACTG		59	9893329	9894398	ATGGAGTCGATTTCCTTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1791	FBgn0030163	FBtr0112968,FBtr0071429	2	2	2	168	X	9857893	9857911	TACTTGGTGCCTACAAAGG		59	9857683	9857762	GTACCAAACAAGTTGCTCTC		59	NA	
Drosophila melanogaster	50	CG9689	FBgn0030159	FBtr0071390	2	1	1	60	X	9776162	9776180	TAAGTCTGCAGAGGATGGT		59	9776203	9776222	GAATTTGTTGACCTCACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12075	FBgn0030065	FBtr0071253,FBtr0071254	2	2	2	63	X	8763928	8764014	CAACAGTTCCAGTGATGAC		58	8764041	8764059	CTTCAGAGCAATAACCGAG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG2147	FBgn0030025	FBtr0071166	3	1	1	68	X	8135143	8135161	CACAAGATTCAATCTCGCC		58	8135192	8135211	GATCCGGATATGGAATCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS14b	FBgn0004404	FBtr0071096	2	1	1	102	X	7829571	7829589	CTGCATATTAAGCTGCGTG		59	7829655	7829673	CAATCTTCATGGACGAACG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CBP	FBgn0026144	FBtr0071053,FBtr0071052	3	2	2	118	X	7235527	7235615	CTTGTTTAAGGCTGTGGAC		58	7235696	7235715	CTATCACAGCGAATGAAACG		59	NA	
Drosophila melanogaster	50	CG18155	FBgn0029945	FBtr0071051	2	1	1	116	X	7223487	7223505	TTCAATTGTATATGGCCGC		58	7223668	7223686	GTATAGCTATCCACAGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	2	12	15	239	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978621	6978640	AATTGATCTACCTCTGTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32776	FBgn0052776	FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630	1	4	4	85	X	3791669	3795148	GAGTCTCGATGATGACTACG		59	3791603	3791623	CGGGATGATCAATAATCTCCA		59	NA	
Drosophila melanogaster	50	tlk	FBgn0086899	FBtr0112680,FBtr0112682,FBtr0112681	3	3	3	86	X	3677585	3677720	CATTCCAGGAGAACTGGAC		59	3677770	3677788	CTATCTCTTCACGCTCAGC		59	NA	
Drosophila melanogaster	50	Mct1	FBgn0023549	FBtr0070393	1	1	1	80	X	2092962	2093859	TGATACACATAGTTACCGATGG		59	2093900	2093918	TGCCCTCGTTGAAATAGTC		59	NA	
Drosophila melanogaster	50	CG14803	FBgn0023513	FBtr0070310	3	1	1	62	X	1763892	1763910	CAAGTCACTCCACTTCCAG		59	1764000	1764019	GAATAGAGTTCGTGGTATGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177	1	4	5	88	X	938610	938748	AATCTGGATAAGGCTCCTG		58	938800	938818	CTATCTGGCATACCTGGTC		58	NA	
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	1	8	8	60	X	551391	551410	CATTATCTCATGGGATGCAG		58	551433	551451	TATCAGCTCAAACAGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33521	FBgn0053521	FBtr0091473,FBtr0091471,FBtr0091472,FBtr0091470	2	4	4	82	4	1210308	1210519	CGAATCTGGAATAAGCAAAGC		59	1210561	1210581	GTACATGATTGCTTAAACCCG		59	NA	
Drosophila melanogaster	50	CG1732	FBgn0039915	FBtr0089972	3	1	2	82	4	654474	654552	CTGTATTACACAAGGTGGC		58	654598	654616	ATATGAGCCACAGTAAGCA		58	NA	
Drosophila melanogaster	50	CG2177	FBgn0039902	FBtr0114519,FBtr0089132,FBtr0089133	2	3	3	79	4	333993	334012	TAACTCTTGGATTGGTTGTG		57	333875	333893	AACGTCTTGATGGCTAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpL6	FBgn0039857	FBtr0085804,FBtr0085805	1	2	2	92	3R	27420766	27420784	CAAGAAGGACCAGAAGGAG		59	27420692	27420710	ATGTTCTGCAAGTACTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11337	FBgn0039846	FBtr0085812,FBtr0085811	1	2	3	80	3R	27230185	27230203	GAGGAAGGAGAGGAATCCA		59	27230067	27230141	TCATGTTACGTCCATTGCT		59	NA	
Drosophila melanogaster	50	CG2218	FBgn0039767	FBtr0085627	2	1	1	86	3R	26253065	26253083	GAGGAAAGTTCAGATGTGG		57	26252997	26253015	CTTATCTCGCTCCAGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tpi	FBgn0086355	FBtr0085582,FBtr0085583	1	2	3	138	3R	25959294	25959312	ATCAAGGACTGGAAGAACG		59	25959113	25959131	CCTCCTTGGAGATGTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpL32	FBgn0002626	FBtr0114556,FBtr0085592,FBtr0085593,FBtr0085594,FBtr0114555	1	5	5	60	3R	25871413	25871431	CGGATCGATATGCTAAGCT		59	25871309	25871327	ACTCTGTTGTCGATACCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7816	FBgn0039714	FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921	3	6	6	81	3R	25690544	25690624	GGGCGATAATCAAGATCCT		58	25690481	25690500	GATCGTGAAGATCAGTATGC		58	NA	
Drosophila melanogaster	50	CG14507	FBgn0039655	FBtr0113305	3	1	1	60	3R	25053242	25053262	CATAATACCGGAAATGTACGG		58	25053202	25053220	TTTGAAGACAAAGGAGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	2	7	8	82	3R	24639657	24639675	TACTGCTACGGATATTGGC		58	24639721	24640880	CGCTCAAACACCTTATAGC		58	NA	
Drosophila melanogaster	50	CG33346	FBgn0053346	FBtr0085306	3	1	1	60	3R	24495984	24496002	ATTGACCTCCAACAATGGG		59	24496026	24496044	AACTTTGCAGACTGATGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hrb98DE	FBgn0001215	FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301	3	4	6	95	3R	24429337	24429355	CAATCAAGGCAACTATGGC		59	24429413	24429794	TTACTTTATCACCTCGTCCG		59	NA	InUTR
Drosophila melanogaster	50	CG31053	FBgn0051053	FBtr0085268	2	1	1	70	3R	23753806	23753824	TTGATCTTCCACATGACCC		59	23753754	23753772	TTATCTGTCGAGGATTCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31055	FBgn0051055	FBtr0085244,FBtr0085242	1	2	3	124	3R	23512758	23512776	ATGACACCCAATTTGTCGA		59	23512282	23512671	TTGCCGAATCTTACAATCCT		59	NA	
Drosophila melanogaster	50	CG12885	FBgn0039523	FBtr0085185	1	1	1	300	3R	23356800	23357017	TGATGAAGCTGCAATACCA		59	23357281	23357299	TAGTAAACAGGATGGCCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	TfIIA-L	FBgn0011289	FBtr0085155,FBtr0085156,FBtr0085154	2	3	3	92	3R	23081684	23081766	TACGATAAGATCACCAGGTC		58	23081821	23081839	TTTCTGGAACACGTAGTCC		59	NA	
Drosophila melanogaster	50	CG18766	FBgn0042111	FBtr0085122,FBtr0085123	2	2	2	95	3R	23068902	23068984	GGTTCTATAAGACCGAGTACG		59	23068827	23068845	ATGAGGCCATGAAGTTGTC		59	NA	
Drosophila melanogaster	50	CG6059	FBgn0039491	FBtr0085130	2	1	1	115	3R	22949093	22949113	CTTAACGATCAAGTTCTGGTC		58	22948948	22948966	GAACGAGCTATTTCCTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6503	FBgn0040606	FBtr0085025	3	1	1	84	3R	22250615	22250633	ATAGTGCCGAGAACAATCG		59	22250549	22250567	TTGATGTTCAGGCTGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nf1	FBgn0015269	FBtr0084953	1	1	3	144	3R	21819071	21819089	TTTGTCAACTGTTTGGAGG		58	21819196	21820468	CTGGACATTCTTTATCCGTG		58	NA	
Drosophila melanogaster	50	CG4774	FBgn0039360	FBtr0084931,FBtr0084929,FBtr0084930	2	3	3	80	3R	21512087	21512106	ATATGTTATAGTCCAGGGCG		58	21511695	21512044	TGTCCATCCAACAGATCTG		58	NA	
Drosophila melanogaster	50	jigr1	FBgn0039350	FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887	3	6	6	98	3R	21474749	21474768	GTACGATAGGTCAAACAAGC		58	21474829	21474919	CTTATACTGGTGGCATCGT		59	NA	
Drosophila melanogaster	50	CG34349	FBgn0085378	FBtr0112558,FBtr0112559	3	2	2	84	3R	20889764	20889782	TATCTTTCGCAGATCTGGA		57	20889827	20889909	GATTCGGAATCTGTATACTCTG		57	NA	
Drosophila melanogaster	50	Rpb10	FBgn0039218	FBtr0084688	1	1	1	60	3R	20543534	20543553	TTGGGTCTAAAGAGGTACTG		58	20543576	20543594	TTTCGATAAGATCCACGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100631	2	1	17	173	3R	20520805	20520823	CTTCATAGCACAAAGTGCC		59	20525143	20528755	CGAGTGATATCACTTGCAC		58	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100632,FBtr0100636,FBtr0100637	3	3	17	93	3R	20521092	20521110	AGGACATTAAGGACGAGAC		58	20521838	20528849	CGATTGAGTACTAAGTCATCG		58	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100638,FBtr0100637	3	3	17	144	3R	20508113	20512918	AGGGCGAAGACATATTGTG		59	20515050	20515068	CTCAAGTTCCAAATCGGGT		59	NA	
Drosophila melanogaster	50	mld	FBgn0083077	FBtr0111012	1	1	2	198	3R	20416955	20416973	TCATTCTCATCCACCTCCT		59	20417133	20441782	CGCGATTTATATTGAGCATCC		59	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	3	5	6	83	3R	20045868	20045949	CTAGAGATTACTGGCTGCG		59	20045803	20045821	GTTGTCGTTCAGGTAGAGG		59	NA	
Drosophila melanogaster	50	CG10219	FBgn0039112	FBtr0084466	2	1	1	93	3R	19585754	19585772	CTTCATAGCTCCATCCCAG		59	19585618	19585636	GTAGTCAACTACCATGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10252	FBgn0039104	FBtr0084475	2	1	1	90	3R	19521519	19521597	CCAATGTCATCGATAAGCG		58	19521447	19521465	TACGAAGGAGCATTAACCC		59	NA	
Drosophila melanogaster	50	CG15498	FBgn0038892	FBtr0084122	3	1	1	171	3R	17393570	17393901	CCATACCAGTACACAATCC		57	17393417	17393435	TATGTGAACTTCCACAGGT		58	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0110938,FBtr0110939,FBtr0084021,FBtr0084022	2	4	12	106	3R	17027123	17027417	TATATGGTAGCATGCGTCG		59	17027487	17027505	GTAGATGTCGTCGAGATCG		59	NA	
Drosophila melanogaster	50	Cpr92A	FBgn0038714	FBtr0083811	2	1	1	76	3R	15423765	15423783	CAGTACCAGCTCATTACGG		59	15423707	15423725	AGGATACGAAAGCAGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5250	FBgn0038691	FBtr0083743	2	1	1	67	3R	15054197	15054216	CTACTTACAAGGAGGATCCC		58	15054149	15054167	GTTGATCGGAATGTTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL55	FBgn0038678	FBtr0083754	3	1	1	73	3R	14920393	14920411	GGATCCACGATAAACATCC		57	14920282	14920300	GTTAAGGTGCTCAGATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	14-3-3epsilon	FBgn0020238	FBtr0083567,FBtr0083565,FBtr0083566,FBtr0083568	3	4	4	80	3R	14073561	14073579	TATTGCCATGAACGATCTG		57	14073621	14073709	ATCTCATAGTAGAACACCGAG		58	NA	
Drosophila melanogaster	50	PP2AB	FBgn0042693	FBtr0083553,FBtr0083552	3	2	5	81	3R	13995749	13995767	GTAGAAGGAGTAGCTCCAG		58	13995812	13997260	GTTTGTTAGCCAAACTGCT		58	NA	
Drosophila melanogaster	50	CG7397	FBgn0038543	FBtr0083531	2	1	1	81	3R	13598313	13598395	GGAGATTGTCAAATCCAAGG		58	13598251	13598269	CAGCTTATTGCAGTCTTCG		58	NA	
Drosophila melanogaster	50	CREG	FBgn0025456	FBtr0089895,FBtr0089896,FBtr0089897	2	3	3	60	3R	13219734	13219752	TTATCTCCATCGACGACAG		58	13219692	13219710	AGCAGGAATCGAATACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31268	FBgn0051268	FBtr0083390	3	1	1	110	3R	12858006	12858089	ATGAACAGAAACAAGGCAG		58	12858163	12858181	TTTCATCGGAATTTGCCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Gyc-89Da	FBgn0038435	FBtr0110963,FBtr0110962	2	2	2	60	3R	12299798	12299816	ACCACGACATGAAGATCAC		59	12299839	12299858	TTGTGCATAATCCAGGTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8925	FBgn0038404	FBtr0083253	3	1	2	101	3R	12000208	12003269	TCTACGTGTTCCAGATTGC		59	12003332	12003352	TGGAGGACTGACTAATATTGC		59	NA	
Drosophila melanogaster	50	Mhcl	FBgn0026059	FBtr0083233,FBtr0083229	1	2	6	165	3R	11895717	11895735	GCTCTATCAGTGATCTGGA		57	11894322	11895588	TACTTGGCGTTATTTCTCG		57	NA	
Drosophila melanogaster	50	c(3)G	FBgn0000246	FBtr0083196,FBtr0083195,FBtr0083194	3	3	3	110	3R	11617460	11617478	AACATTACGACAAGGAGCT		58	11617297	11617386	TATTATTCAGCTCTTGCGC		57	NA	
Drosophila melanogaster	50	CG14871	FBgn0038343	FBtr0083158	2	1	1	176	3R	11311208	11311226	CTTTGAATGCCAGCATCTC		59	11310711	11310729	GTATGAAGTCGATGAGCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	3	7	12	160	3R	11122417	11125003	AGAAATACGATGAGGTTGC		57	11126526	11126544	CTTCTCCTCAGAGACTTCC		58	NA	
Drosophila melanogaster	50	Oscp	FBgn0016691	FBtr0083064,FBtr0083063	3	2	2	82	3R	11092175	11092194	GTCTCTGAAGATCACTTCCC		59	11092239	11092257	TCATGTCGACGTACTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4210	FBgn0038302	FBtr0083049,FBtr0083050	3	2	2	95	3R	11040075	11040153	ACAACGATACTGATCAGGC		59	11040212	11040230	GGACATAGATGTCCTCGAC		58	NA	
Drosophila melanogaster	50	btsz	FBgn0053555	FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530	2	5	5	100	3R	10634158	10634176	ATAAGCTGAGTGCTTTGGA		58	10634011	10634096	TAGATACACCTTAACGTAGGG		58	NA	
Drosophila melanogaster	50	cv-c	FBgn0086901	FBtr0112632,FBtr0112630	1	2	3	153	3R	10235277	10235547	AGACAATAACTCCACATCGT		58	10235143	10235161	AGACATATCCTTTGGTGGC		59	NA	
Drosophila melanogaster	50	Kif19A	FBgn0038205	FBtr0082912,FBtr0082911	3	2	2	80	3R	9939301	9939320	CGGCAGCATATGATTATCTC		58	9939178	9939258	TGATTCAATGTCGTCATCG		57	NA	
Drosophila melanogaster	50	CG8863	FBgn0038145	FBtr0082751,FBtr0082753,FBtr0082752,FBtr0082755	3	4	5	211	3R	9210112	9210130	GATGACCAAGTGTATTGCC		58	9210395	9210413	GTTGCTTGGGATCAAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	poly	FBgn0086371	FBtr0082772	1	1	1	60	3R	9188264	9188283	CAAATGGCTAACGAATACCG		59	9188223	9188243	GCGAATATCCTCTACTAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8795	FBgn0038139	FBtr0100149,FBtr0082774,FBtr0082773	2	3	3	128	3R	9157366	9157632	TTTGTTATGCTCAGGAATGC		58	9157257	9157275	GTTAGAACTGTCGCATTGG		58	NA	
Drosophila melanogaster	50	CG14384	FBgn0038097	FBtr0082731	2	1	1	60	3R	8791909	8791927	GAGGAAATGGACGATGAGG		59	8791867	8791885	GGATAGCATTGTACTCGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Men	FBgn0002719	FBtr0082660,FBtr0082661	1	2	2	178	3R	8539997	8540015	TCTTGGTATTGCCAACCTG		59	8539781	8539799	AAGTATCGATGGGTTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14394	FBgn0038079	FBtr0114501,FBtr0113226	1	2	6	60	3R	8522001	8522019	AGTCTGTCCATAGTCATGC		58	8522808	8522826	TGATGAGGGACTGAATGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10096	FBgn0038032	FBtr0082603,FBtr0082604	2	2	2	93	3R	8217631	8217649	GTATACCAAGGCTCTGACG		59	8217501	8217575	ATAGCTGGCAATTATGACAC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG17738	FBgn0038009	FBtr0082565	3	1	1	64	3R	8096862	8096880	TTGGAGGCTTTGGTTATGG		59	8096907	8096926	GAAACCTCCATAGAAGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	1	15	15	89	3R	7811197	7811279	CCCAAGAATAACATGCTTAAGC		59	7811129	7811148	CAGCTGTGTAAGATTAGCCT		59	NA	
Drosophila melanogaster	50	CG3397	FBgn0037975	FBtr0082504	2	1	1	222	3R	7809366	7809384	TCAGAAGAGGAACGTTGAG		58	7808960	7808978	AACCGTGGATAAAGTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12213	FBgn0037968	FBtr0082510	3	1	3	181	3R	7792356	7792377	AACTATGTACCTAAAGTCCAGC		59	7791995	7792214	GATTTGGGCACAATTTGCA		59	NA	
Drosophila melanogaster	50	CG31116	FBgn0051116	FBtr0082528,FBtr0082526	1	2	5	107	3R	7624475	7624582	TTATGCTGCAAGTAAACCCT		59	7624202	7624223	GTGATTGCTTTGAACTATCTCC		59	NA	
Drosophila melanogaster	50	CG31116	FBgn0051116	FBtr0082528,FBtr0113390,FBtr0113391	2	3	5	121	3R	7628396	7631758	TCTTATGTATGGTCGCTATACC		58	7628048	7628314	CCAGCAGTTCCTTATTCCT		58	NA	
Drosophila melanogaster	50	CG14714	FBgn0037929	FBtr0082422,FBtr0113222	1	2	3	78	3R	7498790	7498808	CAGCCACGAGATTAATGGA		59	7498953	7498971	AGAACAGTGAACGGTTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10535	FBgn0037926	FBtr0082420	3	1	1	103	3R	7480674	7480849	CTATGCCTTGCTAAGTCCC		59	7480916	7480934	CAAATCCAATGATCCCGTC		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG14691	FBgn0037829	FBtr0082314	2	1	2	82	3R	6579577	6579771	CTCGAATCACATACTGAAGGT		59	6579515	6579533	TTACCAGCGAAGTCTTCAC		59	NA	
Drosophila melanogaster	50	CG11870	FBgn0037804	FBtr0090031,FBtr0090030,FBtr0090033,FBtr0090032	2	4	4	95	3R	6117481	6117566	CCACATCTACGAAGTATTTGAG		58	6117620	6117640	TTCCTTTCAGACAGATAGTCG		59	NA	
Drosophila melanogaster	50	Fmr1	FBgn0028734	FBtr0082200,FBtr0082198,FBtr0082199	2	3	5	192	3R	5930726	5930802	TTTCGAATCAAGATCGCTG		58	5930470	5930488	GAAGCTGCTGATCAATCTC		58	NA	
Drosophila melanogaster	50	CG32468	FBgn0052468	FBtr0081592	3	1	1	74	3R	3139065	3139083	AATTGGCCCACAGATAGAG		59	3139009	3139029	CTTAAGAGTAGGCTTAAAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1307	FBgn0026566	FBtr0081698	3	1	1	74	3R	2482897	2482915	GGAATCTTCGGTGTCTAGC		59	2482587	2482606	TTAAAGTTGTCGTTCAAGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Osi10	FBgn0037417	FBtr0078600,FBtr0078601	3	2	2	158	3R	2092757	2092839	ATATCATTGCTGGGCAGTC		59	2092961	2092979	CTCTACCTGATCCAACTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Osi4	FBgn0037412	FBtr0078615	2	1	1	70	3R	2045358	2045377	AAGATCAAACGTGAGGACTC		59	2044286	2044304	ACGTAGTTGTAGATCAGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Spec2	FBgn0044823	FBtr0078739	1	1	1	138	3R	1444207	1444225	GACCAACTCGATACACTCG		59	1443258	1443276	AAAGGTATGTCTGCTGCTC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CRMP	FBgn0023023	FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686	2	4	4	113	3R	1400049	1400129	CTACATCAAGAATGGCGAG		57	1400402	1400420	CCAGGTATCGTTATTTCCG		57	NA	
Drosophila melanogaster	50	CG31550	FBgn0051550	FBtr0078685,FBtr0113409,FBtr0078684	3	3	3	246	3R	1314709	1314728	CTAAAGGAGGACAACATTGG		58	1314990	1315101	GACGTGGATTGTTCAAAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31522	FBgn0051522	FBtr0078941,FBtr0078939	3	2	4	148	3R	272465	272486	CCTCACATATGTCTATCTGGTC		59	271122	272149	AACCGGAAATGCCTATCTC		59	NA	
Drosophila melanogaster	50	CG9778	FBgn0037233	FBtr0078957	3	1	1	87	3R	143397	143415	AACCAGCAATAACCATCCC		59	142781	142799	GTCATCCGACTTGATCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338	1	5	15	165	3R	110121	120861	CGTTAAAGGAGGTGATGGA		58	120990	121008	CTTATCGCGAATGTCTTGC		59	NA	
Drosophila melanogaster	50	CG12581	FBgn0037213	FBtr0078961,FBtr0078962	3	2	2	107	3R	8593	8611	GACTCCGGTAATTCTGGTG		59	9470	9489	CTCTTGACGTATGGAGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mRpS5	FBgn0044510	FBtr0111146,FBtr0111144,FBtr0111147,FBtr0111145	2	4	4	61	3L	24530644	24530665	GCTTGTTATCTTCACATGAACC		59	24530685	24530705	GAAGCTGGTATTACGTAAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slif	FBgn0037203	FBtr0078555,FBtr0078556,FBtr0078557	3	3	3	86	3L	22885585	22885671	AATCTTTGCGTCCATAATGG		58	22885720	22885738	ATGGTGTATGCTAACAGGG		59	NA	
Drosophila melanogaster	50	CG11426	FBgn0037166	FBtr0078506	1	1	1	108	3L	22465972	22465990	TATGCCATGATCTACGTGG		58	22466062	22466080	TATACCAGGCTACCATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nopp140	FBgn0037137	FBtr0089580	2	1	2	111	3L	21827843	21827861	CAGAAGCGCAAGTTTAGTG		59	21828572	21828591	TGTTGTGCTTCTTAAAGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14564	FBgn0037131	FBtr0078435	3	1	1	91	3L	21750424	21750442	AGTTCAACCCAAGATCGAG		59	21750497	21750515	TAAGTGGCTCGGTATTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10512	FBgn0037057	FBtr0078297,FBtr0078300,FBtr0078298	1	3	4	296	3L	21199477	21199495	GATGCCATTAGGAGGATCC		59	21200564	21200582	TTCTTCTCCTTGTCTCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ac78C	FBgn0024150	FBtr0078322	3	1	1	91	3L	21133113	21133131	AGTACCTTAATCCCTGGAC		57	21132912	21133061	CATATTGGATCGGAACATATCC		58	NA	
Drosophila melanogaster	50	skd	FBgn0003415	FBtr0078328,FBtr0112830,FBtr0078329	1	3	3	80	3L	20989472	20989493	TTTCTAACATTCGAGGAAGAGG		59	20989354	20989431	GTCCATATGAGTGTCCCAG		59	NA	
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234	2	10	10	73	3L	20826943	20826961	CAAATGCGTCAAACTGGAC		59	20827130	20827148	TGTTGCGTTTGAGTATGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6981	FBgn0036945	FBtr0074821,FBtr0074820	3	2	2	97	3L	20182279	20182428	AACATAAGGGAGAGCTGTG		58	20182489	20182507	GTAACCCTTCCAGTAGTGG		58	NA	
Drosophila melanogaster	50	CG7433	FBgn0036927	FBtr0074908,FBtr0074909	2	2	2	97	3L	19992458	19992476	AACATAGCTCCGAAAGGAC		59	19992275	19992400	TTCTGGTACCATATGAAGATGC		59	NA	
Drosophila melanogaster	50	CG14087	FBgn0036868	FBtr0074996	3	1	1	60	3L	19382794	19382814	TCTATTGCTTAGGATTGCTGG		59	19382836	19382854	TAGAAGCTTGTTTGAGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GNBP2	FBgn0040322	FBtr0075094,FBtr0075095,FBtr0075096	1	3	4	133	3L	18667368	18667387	CTATAGCATCAAGCCTCCAG		59	18667190	18667272	GTTGGAGCATCAGATAGGG		59	NA	
Drosophila melanogaster	50	AlCR2	FBgn0036789	FBtr0100242	1	1	2	74	3L	18480285	18480523	CATTTATCTTTCTGGCCGTC		58	18480230	18480248	ACAGTATTGGGTTCATGGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6652	FBgn0036687	FBtr0075291,FBtr0075292	2	2	2	80	3L	17014034	17014052	CCCTAGAGGAATCAATGGA		57	17013905	17013991	GTACACTAATGTCCTCATCG		57	NA	
Drosophila melanogaster	50	nudC	FBgn0021768	FBtr0075328	3	1	1	109	3L	16802358	16802377	TGAATCCGATAAGAGTGAGC		59	16802449	16812016	GAATCTTGAGCTCCACCTC		59	NA	
Drosophila melanogaster	50	CG9674	FBgn0036663	FBtr0075341,FBtr0075344	2	2	4	88	3L	16785600	16785618	TAAGAATGCCGGATTACCC		59	16784780	16785548	GAACAATCACACGTGATCG		59	NA	
Drosophila melanogaster	50	CG4101	FBgn0025558	FBtr0075314	3	1	1	110	3L	16605745	16605763	AGCTTGCTAATCCGATACG		59	16605837	16605855	GGACTCCGGATTACTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32158	FBgn0052158	FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404	1	5	7	106	3L	16485841	16485859	CGTACAGCAACTTCAAGAC		58	16485591	16485772	AATGATTGTCGTATCCCTCC		59	NA	
Drosophila melanogaster	50	CG13067	FBgn0036589	FBtr0075465	3	1	1	239	3L	16264444	16264535	TCAAATACTTCGCTCTGTG		57	16264738	16264756	AGTCTTAACGGTAGTAGGC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG5284	FBgn0036566	FBtr0075445	2	1	2	118	3L	16087340	16087463	CTTTACCGTGATAATGTTCGAG		59	16087542	16087560	CATCGTAGATACCTTGCCT		58	NA	
Drosophila melanogaster	50	Sox21a	FBgn0036411	FBtr0075748	2	1	1	61	3L	14099830	14099848	GAATACTGGAAGCCATCAC		57	14099787	14099805	CCATGAAAGCGTTCATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10741	FBgn0036373	FBtr0075810,FBtr0075811	1	2	2	138	3L	13494304	13494390	CCACTCTACAGATATGGCG		59	13494492	13494510	CTTAGGTGTACCACTTGGC		59	NA	
Drosophila melanogaster	50	CG11268	FBgn0036336	FBtr0075876	1	1	1	107	3L	13012061	13012079	TACGGATACATTTGGGTGG		59	13012150	13012296	ATTCTGGACCAAGTGAGTG		59	NA	
Drosophila melanogaster	50	Est-P	FBgn0000594	FBtr0076004	3	1	1	60	3L	12184146	12184166	AACGGTAAGCATCTATAAGCC		59	12184187	12184206	GAGTACTACGACAGGAAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11658	FBgn0036196	FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127	1	5	5	86	3L	11694639	11694657	AACAAGGGTATTGCCAGTC		59	11694509	11694589	GCTGTCATTTACATGCGAG		59	NA	
Drosophila melanogaster	50	CG11652	FBgn0036194	FBtr0076131,FBtr0076130	1	2	2	160	3L	11688043	11688061	ATGTGATAGTACCACAGGC		58	11687837	11687920	CTTGTAAGCCTTTAGCAACG		59	NA	
Drosophila melanogaster	50	CG6140	FBgn0036162	FBtr0076177	3	1	1	165	3L	11457238	11457256	CAATGGACACTTTGAGCTC		58	11457036	11457054	CATTAGCGACTCATTCACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	tna	FBgn0026160	FBtr0076267,FBtr0112923,FBtr0076268	1	3	3	118	3L	10865269	10865287	AACTATCAGCACAGTCCAG		58	10865369	10865454	ATTTCTTCGCTGTTGTCCA		59	NA	
Drosophila melanogaster	50	simj	FBgn0010762	FBtr0076262,FBtr0076263	3	2	3	121	3L	10681692	10681791	TTAGAGCTTTGGGACAAGG		59	10681876	10682039	GTTATTGTTGAAGGCTGCC		59	NA	
Drosophila melanogaster	50	CG34238	FBgn0085267	FBtr0112432	3	1	1	154	3L	10619997	10620015	CCATCCTAGTTGTGTTCGT		59	10620133	10620206	ACTCCACAATCAATCCCAC		59	NA	
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385	2	8	8	112	3L	9825956	9826035	GAGTTAACCGGGACTACAC		59	9826111	9826129	TCTTTCCCAAACTTAGCCG		59	NA	InUTR
Drosophila melanogaster	50	LanB2	FBgn0002528	FBtr0076382	3	1	1	106	3L	9616210	9616290	TAGATTGGAGAATCGTTTGG		57	9616358	9616377	TCAGATTCTTCTGAATGGTG		57	NA	
Drosophila melanogaster	50	CG32036	FBgn0052036	FBtr0114525	1	1	1	81	3L	9481436	9481454	CGATTGGTGGTACAATGTC		58	9481313	9481331	AATGTAGGGATTGTGCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33926	FBgn0053926	FBtr0091930	3	1	1	79	3L	9436443	9436461	TCCTCCAATATTAGGGCCA		59	9438841	9438859	TCAGTGATCTCCATGTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rdl	FBgn0004244	FBtr0076535,FBtr0076536	2	2	3	108	3L	9152790	9152809	GATGGACTGAGTAGTGTTGG		59	9148402	9152720	AATAGTTGCCTGTGGTTAGG		59	NA	
Drosophila melanogaster	50	CG5804	FBgn0035926	FBtr0076591	3	1	1	71	3L	8781523	8781606	TTTCAACGCTATCCTCGAG		59	8781470	8781488	TAGAACTCCAGGTACACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6416	FBgn0035917	FBtr0089568,FBtr0089561,FBtr0089563	3	3	8	88	3L	8620819	8627689	ATTGTGAATCAGCCCTACC		59	8627741	8627759	CTCAAGTAGGACTCTGTCG		58	NA	
Drosophila melanogaster	50	Unr	FBgn0035895	FBtr0114592,FBtr0076661	2	2	2	84	3L	8429048	8429130	ACATAGAAGGATGTGTAACTCG		59	8428985	8429003	TCATAGGTAATCACACCGC		59	NA	
Drosophila melanogaster	50	syd	FBgn0024187	FBtr0076769,FBtr0076768	2	2	2	82	3L	7919927	7921024	TCGCATAAACGATAACGAC		58	7919863	7919881	AGTAACTCTTATCGCCTCG		58	NA	
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112702,FBtr0112698	2	6	10	80	3L	7693414	7693497	ACTGTACAAGGAAGTCATCC		59	7693353	7693373	TTAGCTTCGAATGGTTCTACC		59	NA	
Drosophila melanogaster	50	lqf	FBgn0028582	FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794	3	6	6	87	3L	7527257	7527345	GGATTTCAAGGATCCAAACG		59	7527392	7527413	AGAAATATCCAGCAGATCTAGC		59	NA	
Drosophila melanogaster	50	CG13296	FBgn0035687	FBtr0076997	1	1	1	60	3L	6156266	6156284	ACAGCTCAACTGGATAGTC		58	6156308	6156326	GCTCAATTCGGAAGATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lcp65Ae	FBgn0020640	FBtr0077056	3	1	1	88	3L	6131092	6131110	CTTGGAATCCGATGTTGGA		59	6130962	6130980	ACTTCAACTGTCCCTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13721	FBgn0035554	FBtr0073328	3	1	1	60	3L	4497248	4497268	ATACTATGGAGGTTACTACGG		57	4497208	4497229	CTAGAAGTAGTGTCCATAGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32250	FBgn0052250	FBtr0073287	3	1	1	83	3L	4319226	4319244	TATCCACTGGATACAGTGC		58	4320169	4320187	GATCTCCTTGATCACTTGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG1319	FBgn0035529	FBtr0073239	2	1	1	163	3L	4292833	4292852	TTAACATAACCTTCGTGCGT		59	4292978	4292996	GGTCTTGAAGATCAGGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	prominin-like	FBgn0026189	FBtr0073120,FBtr0073119,FBtr0073118	1	3	3	80	3L	3119960	3120042	CTTGATCAATTAACCCACGC		59	3119899	3119920	CATTTCTGCCAAGGAATTACTC		59	NA	
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	1	9	15	80	3L	3083795	3084812	CTCGCCACTTATATGAATCG		58	3084852	3084873	CAAATTAAGTAGTGAGAACCCG		59	NA	
Drosophila melanogaster	50	Sk2	FBgn0052484	FBtr0072984	2	1	1	62	3L	3049407	3049425	TCTACCTGATCCTCATACG		57	3049451	3049469	TGTTGTAGAGGAAGCTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32488	FBgn0052488	FBtr0073008	1	1	1	60	3L	3015829	3015847	ATTTCAAGGCAGGAGATGG		59	3015787	3015807	TATCCTCCTTGATCTCTATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34025	FBgn0054025	FBtr0100080	3	1	1	60	3L	2960682	2960701	AGACTTCCGAATTCTAACAC		57	2960641	2960659	TTCTCCAAGGCAATACCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL8	FBgn0024939	FBtr0072925	2	1	2	181	3L	2587718	2587736	TTCGAGTACTAATCCCGTG		58	2587880	2588092	GATGATGTCCTTGACAACTC		58	NA	InUTR
Drosophila melanogaster	50	CG33231	FBgn0053231	FBtr0072896	1	1	1	63	3L	2465278	2465296	TAGAGCAGCTAGTGATGAG		57	2465323	2465341	AACATTCCTCAGGATCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13800	FBgn0035338	FBtr0072891	1	1	1	60	3L	2406754	2406775	ACTTGATGTTACTACTAGCACC		59	2406796	2406814	ATCGTTAGAGGTTGGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ptp61F	FBgn0003138	FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718	2	4	4	144	3L	1346060	1346078	AGAAACAGATCAAGTGCCA		59	1345856	1345953	TCGGTTAATTTGAACCATCG		58	NA	
Drosophila melanogaster	50	CG9186	FBgn0035206	FBtr0072727,FBtr0072728	1	2	2	67	3L	1312565	1312583	AATTTGGACGGACAAATCC		58	1312516	1312534	ATCTTGACATCACTTGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LysB	FBgn0004425	FBtr0072628	2	1	1	62	3L	1207603	1207621	AATCTTCCAGATCAACGAC		57	1207647	1207665	TCATTGTAGGAGAAGCGAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12038	FBgn0035179	FBtr0072619,FBtr0072620	2	2	2	169	3L	994903	994981	ATAATGCAGTATCTGGCCTC		59	995113	995131	GCACTCTGGTACTTCAGTC		59	NA	
Drosophila melanogaster	50	CG7047	FBgn0035103	FBtr0072535,FBtr0072534,FBtr0072536	3	3	3	136	3L	177250	177268	ATAAAGTGCAGAGTGTCCC		59	177066	177152	AAATACTCGATGGTCTCAGTG		59	NA	
Drosophila melanogaster	50	snoRNA:Or-aca4	FBgn0082922	FBtr0113512	2	1	1	60	2R	13504275	13504293	GTGGCAAGAGTAGCTACTG		59	13504317	13504335	TTTGATCTACCTTCAGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tkr	FBgn0003715	FBtr0072458,FBtr0100126,FBtr0072457,FBtr0072456	1	4	4	178	2R	20981953	20981972	GTAAGGAGTTTGGAAAGGAG		57	20979236	20981812	GAGACCAAACATATGTGGC		58	NA	
Drosophila melanogaster	50	CG30427	FBgn0043792	FBtr0072413	3	1	4	84	2R	20817351	20817369	TGAAGTGATACCTGTGGAC		58	20817232	20817303	CTGAAGAGGTCTCTTCTCC		58	NA	
Drosophila melanogaster	50	Dll	FBgn0000157	FBtr0072378,FBtr0072379	1	2	2	166	2R	20705136	20705154	ACCTATCAGCATTTCGGAC		59	20705284	20707346	ATGGAGAAGTCATCCTTCG		58	NA	Nonspecific
Drosophila melanogaster	50	Dll	FBgn0000157	FBtr0072378,FBtr0072379	2	2	2	166	2R	20705136	20705154	ACCTATCAGCATTTCGGAC		59	20705284	20707346	ATGGAGAAGTCATCCTTCG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG13569	FBgn0034979	FBtr0072283,FBtr0072284	3	2	2	126	2R	20011038	20011115	ATCCATCAAGTTCTGCCAC		59	20010930	20010948	CTTATCGGAGCTAACGACG		59	NA	
Drosophila melanogaster	50	CG2970	FBgn0034936	FBtr0072145	1	1	1	96	2R	19837691	19837771	ATCCGTGATATTCGACTGC		59	19837831	19837849	CCTCCGATTCGAGAATAGC		59	NA	
Drosophila melanogaster	50	mRpL43	FBgn0034893	FBtr0072084	2	1	1	90	2R	19586040	19586123	GTGGGAGAGTACTTGAACG		59	19586176	19586195	TCTTTAGCAGGTCAATCCAC		59	NA	
Drosophila melanogaster	50	CG34372	FBgn0085401	FBtr0112597	2	1	1	102	2R	19354701	19354719	GAGTATCACTATCTGGGCA		57	19354782	19361612	GATGAAAGGACTTGAGATACTG		58	NA	
Drosophila melanogaster	50	yellow-d	FBgn0041712	FBtr0072011	2	1	1	167	2R	19267484	19267503	TACAATTCGCGAAACTTTGG		59	19267694	19267712	GAAGTTGACCTCCTTCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Klp59D	FBgn0034827	FBtr0071968	1	1	1	60	2R	19031671	19031689	TCTAGAGACTTACGCTCAC		57	19031710	19031731	GTACTGCTCTATTTCCTTATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3074	FBgn0034709	FBtr0071785,FBtr0071784	2	2	2	153	2R	18079062	18079174	CATCTCCAACACTCTATGC		57	18078927	18078945	CGTGGTATTGTACTTGCTG		58	NA	
Drosophila melanogaster	50	Gr58a	FBgn0041239	FBtr0071728	3	1	1	60	2R	17868469	17868487	TCCGTCAACGTATAAGGTC		58	17868511	17868529	ATAAGCCAAACTCGTTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HmgZ	FBgn0010228	FBtr0071673,FBtr0071674	3	2	2	155	2R	17585804	17585905	GAAGGATAAGACCGAGTGG		59	17585667	17585685	TTCTTCTTGGCCTTCTTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG30387	FBgn0050387	FBtr0071597,FBtr0071595,FBtr0071596	3	3	3	80	2R	17194842	17194917	GTCTTAAAGGAGGATCAGC		57	17194961	17194979	CATTGTATTGGAAACGCTG		57	NA	
Drosophila melanogaster	50	CG9394	FBgn0034588	FBtr0071567	1	1	1	60	2R	17006858	17006876	CTCATGTTCCATGTGAACC		58	17006898	17006918	CATAAACTTCCACCAGATAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Treh	FBgn0003748	FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536	3	6	6	81	2R	16972827	16972845	TTTAATGCCATGATGGAGG		57	16972889	16972968	GTGCACTGAAGTACTTATCG		58	NA	
Drosophila melanogaster	50	bl	FBgn0015907	FBtr0086219	3	1	4	91	2R	16483145	16483163	GTTCGCATACTGATTCCGA		59	16483312	16485968	TTTGGATGGTTCTGAGTCC		59	NA	InUTR
Drosophila melanogaster	50	Obp57e	FBgn0050145	FBtr0086265	3	1	1	63	2R	16435543	16435561	CTTTCTAACATGCGTCCTC		58	16435498	16435516	ATCGATCTGCACATTACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16926	FBgn0040732	FBtr0086499	1	1	1	71	2R	15388240	15388258	AGATAAGGGTTCCGTTGAC		58	15388111	15388129	TTGTCGTTGTACTTGTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	5-HT1B	FBgn0004572	FBtr0086599	1	1	1	84	2R	14914735	14914753	TATTTGGTTGCATCTCTGG		57	14914213	14914689	CATTACTTATCTCGTAGACGG		57	NA	
Drosophila melanogaster	50	Jheh2	FBgn0034405	FBtr0089969	2	1	2	80	2R	14744764	14744782	ACATATCTGCCCAAATGGA		58	14744188	14744720	TGAAGAGCCCTGAATTTCC		59	NA	
Drosophila melanogaster	50	CG15088	FBgn0034381	FBtr0086646,FBtr0086645	2	2	2	82	2R	14616064	14616082	GGATTTCTACGGTGTCTCC		59	14615935	14616021	GATTAACTCCGTAAATCCATGC		59	NA	
Drosophila melanogaster	50	GstE5	FBgn0063495	FBtr0086673	3	1	1	60	2R	14292315	14292336	GGATGATGGTAACTACATTTGG		58	14292356	14292375	ATATTTGGACACCAGATACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pen-2	FBgn0053198	FBtr0089842	1	1	1	60	2R	14165340	14165358	AGCAGAGCCAAATAAAGAG		57	14165456	14165474	ATCAGCCAGAATAGAGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Sema-1b	FBgn0016059	FBtr0086890,FBtr0086891	3	2	2	107	2R	13565405	13565423	ACAAGACAAAGTCCTAGCC		59	13564084	13565334	TTGTAGATGACGTCCTTGG		58	NA	
Drosophila melanogaster	50	Dcr-2	FBgn0034246	FBtr0086904	3	1	1	80	2R	13466225	13466309	CACAATTTACAGCGATCCC		58	13466163	13466183	CTGTAGAGTACTTTACACGCT		59	NA	
Drosophila melanogaster	50	Ngp	FBgn0034243	FBtr0086906	1	1	1	82	2R	13454602	13454621	ATTCTTAGTGCCGAATATCC		57	13454481	13454499	AATAGATTGATGAGCGCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG4847	FBgn0034229	FBtr0086937,FBtr0086934,FBtr0086933	1	3	5	191	2R	13400212	13400290	GACTTCTTGAGCCAATCTG		58	13400443	13400463	GGTCAATTGACTAAGGAACTC		58	NA	
Drosophila melanogaster	50	CG4847	FBgn0034229	FBtr0086937,FBtr0086936,FBtr0086934,FBtr0086933,FBtr0086935	3	5	5	68	2R	13400456	13400474	AATTGACCGGTCTGAAGAG		59	13400570	13400589	GGTTGACCAACTTCAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30457	FBgn0050457	FBtr0086998	2	1	1	219	2R	13048142	13048160	CTACAACTATGCTCCCGTC		59	13047941	13047959	AATGTAGGTGTTCACTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6421	FBgn0025827	FBtr0087043	3	1	1	65	2R	12760234	12760252	CACGATTATGCTCGAATCC		58	12760281	12760299	GAAATTGTAGGGCATGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Picot	FBgn0024315	FBtr0087115,FBtr0087114	2	2	2	83	2R	12544687	12544777	ATTCCTATTGATGACTCTCAGG		59	12544625	12544643	GCCATAGAAGAAGGACGAC		59	NA	
Drosophila melanogaster	50	CG8366	FBgn0034054	FBtr0087201	1	1	1	125	2R	11842950	11842969	ATGTATCGCTTAAGATCGTC		57	11843114	11843132	CTGTGCTCTTGTTTAGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8192	FBgn0034030	FBtr0087354	3	1	1	145	2R	11433076	11433094	TACCTAAAGATCCAGGGAC		57	11432885	11432969	GCATAGTATCCAGAGTTTCTG		57	NA	
Drosophila melanogaster	50	CG34365	FBgn0085394	FBtr0112588,FBtr0112589,FBtr0112590,FBtr0112587	3	4	4	99	2R	11344307	11350808	TATCGAGGAAGAAACGTCAG		59	11350870	11350888	CTCATCCGGATTGGATTCC		59	NA	
Drosophila melanogaster	50	CG8102	FBgn0034007	FBtr0087393,FBtr0087394	3	2	2	60	2R	11184882	11184901	CCAAACTTTACTGTCTCAGC		58	11184841	11184859	GACATCTCTTCCTCCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11808	FBgn0034000	FBtr0087366	1	1	1	60	2R	11104309	11104327	AACAATGAAACGGTCACAG		58	11104351	11104369	TTACATCTTCGTTTCGGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Als	FBgn0033920	FBtr0087540	1	1	1	80	2R	10159222	10159300	CTAGGATTCGGCATTCTAGG		59	10159341	10159361	AAATAGATCCTTGGGTAGCTG		59	NA	
Drosophila melanogaster	50	CG8394	FBgn0033911	FBtr0087577	1	1	1	60	2R	10087346	10087364	GATCCTGGATGCTATTCGT		58	10087304	10087324	TTCAGTGACTTAAGGAATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13349	FBgn0033886	FBtr0114494,FBtr0114493	3	2	5	70	2R	9846689	9846707	AAGAACTCAACCACATCGA		58	9846637	9846655	TAGGCTTGGAATGGATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930	3	5	6	106	2R	8335508	8335527	TATCATAACCTCAACAAGCG		57	8335595	8335676	GAGTTATCACTTGTGTACGC		58	NA	
Drosophila melanogaster	50	CG8290	FBgn0026573	FBtr0088042	1	1	2	103	2R	7860538	7862871	AGCTGCTGATAAACAAGCT		59	7862938	7862956	GCATGTCATCTTCGTTGTC		59	NA	
Drosophila melanogaster	50	CG34229	FBgn0085258	FBtr0112422	2	1	1	178	2R	7729367	7729385	AAGTACTGAAGCTCTACCG		58	7729527	7729545	CCTTAGTTCTGTGAGGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34228	FBgn0085257	FBtr0112421	2	1	1	68	2R	7539547	7539567	GGATATCTGACAAATACACCC		57	7539665	7539683	CTTCTGTCAACCGTTTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	san	FBgn0024188	FBtr0088126	1	1	1	106	2R	7248722	7248740	CACAGTTATGTTCGAGCAC		58	7249042	7249060	TATAGAACTCGATGGCTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	skf	FBgn0050021	FBtr0114569,FBtr0114570,FBtr0088196	3	3	3	64	2R	7117475	7117493	TGTGACATGCTAGAAGCAG		59	7117366	7117447	ATCAGCTTGGAAAGAGCAG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089363	3	1	26	188	2R	6419760	6419778	TTGAGGATTTGACACTGGA		58	6406866	6419548	GGTTTGTAGAGACATCTTGG		57	NA	
Drosophila melanogaster	50	CG2269	FBgn0033484	FBtr0088407,FBtr0088408,FBtr0088409	3	3	3	135	2R	5982127	5982206	ATCAACTGGCAGAAGACTC		59	5982305	5982323	TTTAGGGTCTCGTAGGGAG		59	NA	
Drosophila melanogaster	50	CG12918	FBgn0033477	FBtr0088433	1	1	1	81	2R	5939072	5939090	GTTCGCCTAGTGAAATCTG		58	5938815	5938833	TTGCCTTCAAGTAGTCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1809	FBgn0033423	FBtr0088520	1	1	1	145	2R	5450902	5450989	GGTTATCCTTATCGTGACCA		58	5451097	5451115	TTCTCCTTTAGAAGGGCAC		58	NA	
Drosophila melanogaster	50	unpg	FBgn0015561	FBtr0088586	3	1	1	135	2R	5083258	5083276	CTTGGAGAAACAGCTTCCA		59	5083374	5083393	GTAGTCCTGGTTCATAAGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rya-r44F	FBgn0011286	FBtr0088637,FBtr0088639	1	2	4	110	2R	4758430	4758448	AAGAGAAAGTCTACGGTGG		58	4758521	4759736	TCAACGAGAAGCTAATTGTG		58	NA	
Drosophila melanogaster	50	CG8746	FBgn0033330	FBtr0088714	1	1	1	60	2R	4680636	4680654	CCTCCAAAGTCGAGATCAC		59	4680678	4680696	GTGACGATTGCTTCTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	stmA	FBgn0086784	FBtr0088715,FBtr0100111,FBtr0088716	3	3	3	114	2R	4618187	4618266	TGTTTATCCTCGGAATCCAG		59	4618092	4618110	CTAACACGCGAGATTAGCA		59	NA	
Drosophila melanogaster	50	CG30379	FBgn0050379	FBtr0088851	2	1	1	63	2R	3828676	3828694	TATACGCATGGGATTCGTC		59	3828771	3828790	CAACGTGAACAGTAATTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	tor	FBgn0003733	FBtr0112838,FBtr0088938	3	2	3	89	2R	3592980	3592999	CTAACGATGTTCCAGAAAGG		58	3592852	3592930	GCTCCACTTTACTGTTTAGAC		58	NA	
Drosophila melanogaster	50	dpld	FBgn0015930	FBtr0088985,FBtr0088987,FBtr0088986	1	3	3	119	2R	3371061	3371161	TATGTGGGATATCGAGGTG		57	3370960	3370978	TCAATGAGGAACACAATGC		58	NA	
Drosophila melanogaster	50	CG11112	FBgn0033164	FBtr0113047	1	1	1	60	2R	3288448	3288466	ACACTTCGAGGATAAGGTC		58	3288490	3288508	GCTATCATCGTTGTTACCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111064,FBtr0111063,FBtr0111066,FBtr0111065,FBtr0111101,FBtr0089019	1	6	60	115	2R	3251771	3251789	GGTCAAGTGTAAGATCCCA		58	3249364	3251692	ACTTTCCATCATAGGCGTC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111064,FBtr0111057,FBtr0111100	3	3	60	85	2R	3247004	3247022	AGCACCTTAAGGGAAAGAG		58	3236471	3246958	CTTGTACCATCTAAAGAAAGGC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111087,FBtr0111059,FBtr0111074	3	3	60	94	2R	3244596	3249235	TTGGTCATCACAGAACCTG		59	3244520	3244539	CTTAAGGCTTGACCCATAGG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111090,FBtr0089020	1	2	60	161	2R	3249350	3249368	AAAGTACCTGGTATTGCCC		59	3238787	3249225	TTAAATCCCACAGGCTCTG		59	NA	
Drosophila melanogaster	50	Or43a	FBgn0026389	FBtr0089051	2	1	1	83	2R	3120818	3120931	CGATGGAGATAAGAGTCGG		59	3120753	3120772	TAAAGTAGGAGTAGGACGCA		59	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086205,FBtr0086204,FBtr0086197,FBtr0086201,FBtr0086196,FBtr0086198,FBtr0086202,FBtr0086199,FBtr0086200,FBtr0086203	1	10	11	67	2R	2764942	2764960	AAGTGGAATTGTCTGAGGT		58	2764829	2764847	AAATTCAGCCTGATCGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Eb1	FBgn0027066	FBtr0086128	3	1	5	122	2R	2640924	2640942	AACGATCTCCATCTGATGC		59	2641028	2641693	GGGTATAATCGGAGTTCGT		58	NA	
Drosophila melanogaster	50	PNGase	FBgn0033050	FBtr0085971,FBtr0085972	2	2	2	167	2R	1905650	1905668	AAGAAGTACAGAGATGCGC		59	1905853	1905934	ATTATTGGTGCGCAATACAC		59	NA	
Drosophila melanogaster	50	CG11163	FBgn0025693	FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053	3	4	4	80	2R	1662572	1662645	TGCATCTCGTTACAGACTC		59	1662510	1662530	TATATCTTGGGCTGGATACGA		59	NA	
Drosophila melanogaster	50	scarface	FBgn0033033	FBtr0086061,FBtr0086060	1	2	2	123	2R	1566825	1566843	GAAAGACGTTTGGAGTTCG		59	1565503	1566741	CCTCTTCATGTATAGATAACGC		58	NA	
Drosophila melanogaster	50	CG17715	FBgn0041004	FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246	1	6	6	93	2L	22742091	22742164	ATAATGATCATGGCGGGTG		59	22742219	22742239	TTATGGTGTTTCCTAGTCCTG		59	NA	
Drosophila melanogaster	50	CG41432	FBgn0083999	FBtr0111264	3	1	1	175	2L	22011122	22011141	ATAATGAACCTTGGCATCAC		58	22011279	22011297	GACTTTATACACTCGCCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1416	FBgn0032961	FBtr0085903,FBtr0085904,FBtr0085905	2	3	3	113	2L	21759358	21760490	GAAGAAACTTCATCCAGCAC		59	21760566	21760584	CTGTTTGATGCTATGCCAG		58	NA	
Drosophila melanogaster	50	CG17472	FBgn0032868	FBtr0081382	2	1	1	61	2L	20634581	20634601	TCTTAGTATTGGCGAATCTGG		59	20634692	20634713	CCTTTCGTGTTCATCATATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40169	FBgn0058169	FBtr0100178	1	1	2	115	2L	20238606	20238626	CGCCTTTAAGTCTTCTTTGTC		59	20243210	20243228	TAAAGCGATGCAAGAACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	mRpS18B	FBgn0032849	FBtr0081338	3	1	2	159	2L	20096893	20096911	CTTACAAGCAAACCTACGG		58	20096690	20096708	AGCACCAGGTATTCATCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	fs(2)ltoPP43	FBgn0004811	FBtr0081317,FBtr0081316	3	2	2	61	2L	19794636	19794660	CTATGTCTACGATCTATATGTTCCC		59	19794599	19794617	CCATCATGTCCACATATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13083	FBgn0032789	FBtr0081241,FBtr0081242	3	2	2	68	2L	19487824	19487842	ATTGTTAACGCAATCCAGG		58	19487873	19487892	GATTTCTAGCTCCACTTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab9	FBgn0032782	FBtr0081206	2	1	1	158	2L	19434714	19434732	GTTCTACAGAGGATCGGAC		58	19434852	19434933	GGAATGTCGTTCTTATTTCCC		59	NA	
Drosophila melanogaster	50	CG31786	FBgn0051786	FBtr0081057	1	1	1	100	2L	18210627	18210645	TGTCGGCATAACAAGTCAG		59	18210137	18210564	CAGAGGAACCTACTGAAGTG		59	NA	
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976	3	4	6	107	2L	17394484	17400407	CTTATACAGATAACAGCAGCG		58	17400476	17400494	CAATGAAGGCAATCTGTCC		58	NA	
Drosophila melanogaster	50	beat-IIIc	FBgn0032629	FBtr0080971,FBtr0080972	3	2	2	91	2L	17191093	17193537	ATGATTGTTGCGTATCTTCC		58	17191021	17191042	CAATTAACCCGAACATAGTCTC		58	NA	
Drosophila melanogaster	50	Tpr2	FBgn0032586	FBtr0080867,FBtr0080866	2	2	2	94	2L	16505937	16506014	CGCCTGTTTGAAATATCGT		58	16506072	16506090	GTTTCATTACACTGACCGC		59	NA	
Drosophila melanogaster	50	CG12455	FBgn0028859	FBtr0080823	2	1	2	80	2L	16239065	16239085	CTGGAAGTATTTAGTAGGTCG		57	16239127	16239211	TATTCCATAAATGGCGCTC		57	NA	
Drosophila melanogaster	50	CG4168	FBgn0028888	FBtr0080716	2	1	1	218	2L	15176145	15176164	ATTTGACAACTGTAACTGGG		58	15171527	15172142	CTGTGCATGAACTCAAACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4140	FBgn0028535	FBtr0080728	1	1	1	78	2L	15006800	15006818	TCCAATTGTCGGAATACGG		59	15006740	15006758	GTTCCTCGGAGTTGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9254	FBgn0028513	FBtr0080512	3	1	1	60	2L	13596096	13596114	TGCCAAAGTATATGTCGGA		58	13596054	13596072	GAGGAGTAGAGACCATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16826	FBgn0032505	FBtr0080464	2	1	1	60	2L	13348208	13348228	GTCGTAAATGATCTGGAAGTG		58	13348250	13348268	GTTTCTTCTCGTCTATCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Edem2	FBgn0032480	FBtr0080438	2	1	1	80	2L	13193604	13193679	GACATCCTTGGAAATTTCTCC		58	13193720	13193739	ATCAAACTCTGTGAAATCGC		58	NA	
Drosophila melanogaster	50	CG6153	FBgn0032445	FBtr0080394	2	1	1	61	2L	12693623	12693641	TTTGGCGAAGACATAACAC		58	12693729	12693747	TGAGCTTCTGTGAACTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4705	FBgn0032339	FBtr0080195,FBtr0080196	1	2	2	93	2L	11092644	11092662	ACCCTATTTGTTCCTTCGT		58	11092716	11092792	GTGACCAGTTCTATTTCATTGG		59	NA	
Drosophila melanogaster	50	CG5727	FBgn0032193	FBtr0079958	3	1	1	60	2L	10210340	10210360	GATCGACTATTTCTGATACCC		57	10210300	10210318	CACTTTCTACGAACTCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gcm	FBgn0014179	FBtr0079855	2	1	1	60	2L	9580392	9580410	GATACGTCCAGTTTGACCA		59	9580350	9580371	CATTGTAGTAGCCATAATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7810	FBgn0032017	FBtr0079612	3	1	1	60	2L	8310255	8310273	AGGAACGCTTTCTTAGTGG		59	8310213	8310231	GTGTTATCATCTACGGCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Snx6	FBgn0032005	FBtr0079631	2	1	1	105	2L	8219287	8219370	AGGATCAAGAATCTGGAAACC		59	8219202	8219220	TAAGTAGAGCTTTGGCAGC		59	NA	
Drosophila melanogaster	50	CG5171	FBgn0031907	FBtr0079440,FBtr0079439,FBtr0114588	2	3	3	122	2L	7404097	7404115	TAATTGGTCGCAGAAAGTG		58	7404267	7404285	GTTTGAATCTGGGCATCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	ninaC	FBgn0002938	FBtr0079437,FBtr0079436	2	2	2	80	2L	7379582	7379601	AGTTTCATTGGCGATATCCT		59	7379644	7379720	ATACTTGGCATGGAACTCC		59	NA	
Drosophila melanogaster	50	CG8902	FBgn0031886	FBtr0079424	2	1	1	108	2L	7065042	7065060	GAGGACAGTCAAGTGACAG		59	7064895	7064913	GATGTTCATTCGTCACCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	ifc	FBgn0001941	FBtr0079179	1	1	1	60	2L	5987732	5987752	TCCGTCCACTGATTATTAACC		59	5987772	5987792	ACCACGGTGTTAATAATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acp26Aa	FBgn0002855	FBtr0079155	3	1	1	60	2L	5893408	5893427	AACAGAGGTTACTAACGGAG		58	5893367	5893386	AAGTATATGGAATGGTTCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hel25E	FBgn0014189	FBtr0079123,FBtr0079125,FBtr0079124	2	3	3	83	2L	5539760	5539780	ACTTAACGAAGTACAGGATCG		59	5539635	5539717	CGTCCCTCAATGTATGTAGAG		59	NA	
Drosophila melanogaster	50	CG15439	FBgn0031606	FBtr0077455	3	1	1	60	2L	4450933	4450953	TATGTGGATCGATATTCGCTG		59	4450893	4450911	ACTCCTTGGGTACATTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34177	FBgn0085206	FBtr0112368	3	1	1	123	2L	4434166	4434184	TTAGCATCAAGGATCCCAC		59	4434330	4434348	TTGATGTAGTCACCGTAGC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	l(2)k05819	FBgn0022153	FBtr0077432	3	1	2	164	2L	4395031	4395049	AGATCCTCCAGTGAAACCT		59	4395176	4395252	ATATACTTGGTGACCAGCAG		59	NA	
Drosophila melanogaster	50	Atet	FBgn0020762	FBtr0077427,FBtr0112899,FBtr0112898,FBtr0077426	2	4	4	80	2L	4343789	4343809	CATCTCAACTACTGGTACTCC		59	4343849	4343931	GGAGAAGACAATCTGAAATGG		58	NA	
Drosophila melanogaster	50	CG10039	FBgn0031581	FBtr0077507	2	1	1	63	2L	4007885	4007905	CACCACTACTACATTTGTACC		58	4008771	4008789	ATTCGCGTAGTAGAGAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Thor	FBgn0022073	FBtr0077524	3	1	1	159	2L	3479190	3479208	AAACTTATCTACGAGCGGG		59	3479331	3479349	ACTTGGTCTGCTTGATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31776	FBgn0051776	FBtr0077522	1	1	1	61	2L	3471513	3471534	CCATGAAATCGATTAGTAGTCC		58	3471556	3471680	TACTCGCTTGTAGTTCCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG9664	FBgn0031515	FBtr0077607,FBtr0077605	2	2	3	89	2L	3292518	3292536	TGAATCGCTCATCACTCAG		59	3292289	3292465	TCTATCAAGGCTGTCTCCT		59	NA	
Drosophila melanogaster	50	Alp23B	FBgn0031461	FBtr0077720,FBtr0077721	3	2	2	94	2L	2810634	2811157	AATGTGCAAGATGAGTGGA		59	2811215	2811233	CAGGTGATTTGGATGAGGT		59	NA	
Drosophila melanogaster	50	snapin	FBgn0031455	FBtr0077737	1	1	1	60	2L	2759346	2759364	TCATAAGCAACGTGTTGGT		59	2759304	2759322	TCTATCAGCTTGTGCAGAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31663	FBgn0051663	FBtr0077893	1	1	1	198	2L	1866134	1866235	CTACTCCTTCATCGAGACTG		58	1865744	1865762	GAGTCCTCCAGTGAAACTG		59	NA	
Drosophila melanogaster	50	CG17650	FBgn0031365	FBtr0077901	3	1	1	60	2L	1759006	1759026	TAATGACTATCCCATGGAGAG		58	1758966	1758985	ATTATCAAGATCCCTCCTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4577	FBgn0031306	FBtr0077957	3	1	1	192	2L	1139037	1139055	GAGATCGATGACTACGTGC		59	1139266	1139285	CCACGTTGTAGTAGATACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	dock	FBgn0010583	FBtr0078013,FBtr0078015,FBtr0078014	2	3	3	102	2L	831533	831552	GTATTATGGAGCCATCACCC		59	831616	831722	GTCTCCCATGTTAGTCTCAC		59	NA	
Drosophila melanogaster	50	Gr21a	FBgn0041250	FBtr0078006	1	1	1	97	2L	782369	782388	CTTCTTCACAACGATCATCG		59	782501	782519	AGAACACGATGACGAACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ets21C	FBgn0005660	FBtr0078079,FBtr0112854	1	2	2	169	2L	547990	548008	TGAACTACGACAAGCTGAG		59	547762	547780	GTAGGAACCCAGCATACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4133	FBgn0031257	FBtr0078061	2	1	1	107	2L	457242	457261	TTGAGTAAGCTGAAGAACCG		59	457328	457410	GTTCATTTCATCTTCCATCTCC		59	NA	
Drosophila melanogaster	50	CG3625	FBgn0031245	FBtr0078136,FBtr0078135,FBtr0113009	3	3	3	118	2L	284780	284798	TATCGACAGGGAGCTAGTC		59	284143	284161	TGTACGAGATGAACAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3436	FBgn0031229	FBtr0078120,FBtr0078119	3	2	2	68	2L	156466	156485	TAGAAGGACATGAGGGAGAG		59	156514	156534	CAGAAGAAAGCAATAACTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437	1	6	10	94	2L	110793	110811	GAGATCACGTCTAAGGCTG		59	110869	111916	AAATCGAAACCCTTGGAGG		59	NA	
Drosophila melanogaster	50	CR32658	FBgn0040859	FBtr0073628,FBtr0073626,FBtr0073627	2	3	3	141	X	11985679	11985698	CAATTGCATTAACAAGCCAG		58	11985865	11985883	ACCATAGTAATCCCGTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15452	FBgn0031130	FBtr0077292	3	1	1	139	X	20616430	20616708	GATTCGCAACGCATTAAGG		59	20616309	20616327	CGACTTAGTGGATTGTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15743	FBgn0030465	FBtr0073755	3	1	1	76	X	13180853	13180871	TAAATGCCCAGGATGTCAC		59	13180911	13181005	GTACTCGTATAGCTCCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0237	FBgn0027259	FBtr0073541	3	1	1	97	X	11466148	11466225	TATCTGGGATCCTAGCTGTC		59	11466070	11466088	CCGCATGCATTACAAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	antdh	FBgn0026268	FBtr0073468	2	1	1	84	X	11062400	11062497	TCAAGATTACGAGCGTCAG		59	11062334	11062352	AGCATTCGATCCTTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071474,FBtr0071478,FBtr0071477,FBtr0071475	3	7	7	104	X	10172050	10172137	CCGAGGCCTTTAGATTCAG		59	10171964	10171982	ACAGCACAAAGTAGCTCTC		59	NA	
Drosophila melanogaster	50	CG32727	FBgn0052727	FBtr0071056	1	1	1	103	X	7301528	7301605	CTTTCAGAAACGGATGTCG		58	7301672	7301690	TTCGATCCGGATGTTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wuho	FBgn0029857	FBtr0070897	1	1	1	60	X	6183175	6183194	GCAACTTTACTTTAACCAGC		57	6183217	6183235	CTTAAGCGTTCGTTCTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34434	FBgn0085463	FBtr0112735	1	1	1	168	X	5509828	5509972	CAAGAACACAAACGTCGAG		59	5509678	5509696	AACTGCATTCCAATCACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or2a	FBgn0023523	FBtr0070397	2	1	1	71	X	2141352	2141370	TTCTCTTATCTACGCAGGC		58	2141405	2141493	TATGTGAACCTCATGACCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14798	FBgn0029588	FBtr0089693,FBtr0089694	3	2	2	289	X	1587078	1587096	AAATCGAGCCTCACATCAG		59	1587475	1587493	GACAAAGTCATGGGATCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13361	FBgn0029532	FBtr0070149	1	1	1	60	X	646259	646356	TAAATTCACGCTACAAGGGA		59	646218	646236	TATTTGGTCTGATTGTCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11148	FBgn0039936	FBtr0089250,FBtr0089249,FBtr0089248	3	3	3	82	4	880999	881075	AAAGTTGATGTACCCACGT		59	880935	880956	AGGTATATTCGGACATAGTCCT		59	NA	
Drosophila melanogaster	50	Sox102F	FBgn0039938	FBtr0100600,FBtr0089252	2	2	2	81	4	822726	823031	AAAGTCATGGGAGAGTGTG		59	822663	822682	TTTACTGAGTCACGACTCAC		59	NA	
Drosophila melanogaster	50	Asator	FBgn0039908	FBtr0089108,FBtr0089109,FBtr0089107	2	3	3	80	4	499215	499233	AACAAACTCCCAAGTAGCC		59	498699	499173	AGCTTCGTATACTGTACATCC		59	NA	
Drosophila melanogaster	50	Sry-beta	FBgn0003511	FBtr0085556	1	1	1	79	3R	25865600	25865671	GATAGAAGGCTGCATTGTG		58	25865713	25865732	GCTGGTTTATGATCTTCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5039	FBgn0039356	FBtr0084900	1	1	1	125	3R	21504866	21504939	CTCCACATTCAGGATGGAG		59	21505025	21505046	GTTTGCAGTAGTAACTAAACCG		59	NA	InUTR
Drosophila melanogaster	50	CG13640	FBgn0039237	FBtr0084730	3	1	1	60	3R	20687759	20687778	TTCTTCAAGTCCTGGAAGAC		59	20687718	20687742	CATAGTCTTGTACTCCACTATATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6454	FBgn0039187	FBtr0084608,FBtr0084609	1	2	2	80	3R	20179238	20179351	ACCATATCTGACGATGTCTG		58	20179391	20179412	CGATACAGATCGATTAAACACC		59	NA	
Drosophila melanogaster	50	mask	FBgn0043884	FBtr0084563,FBtr0084562	2	2	2	112	3R	20068259	20068390	CATTCAAGAGAACACCAAACTC		59	20068462	20068481	TAGTCTTGTCCAAACTCACG		59	NA	
Drosophila melanogaster	50	CG4335	FBgn0038795	FBtr0083894	3	1	1	126	3R	16233294	16233371	AATCTACAAGTGCAGTGGA		58	16233186	16233204	TACGATTCCATGGTGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4783	FBgn0038756	FBtr0083823	1	1	1	60	3R	15774212	15774232	CTGGGCTACCATAATAATTGC		58	15774254	15774327	AATAAAGCTTTGCTGGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5013	FBgn0038396	FBtr0083223	1	1	1	181	3R	11875629	11875698	AATACCTGAGCTGCTTCAG		59	11875843	11875861	CAGTAAGTACCACTTGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	beat-Vc	FBgn0038084	FBtr0082658	3	1	1	92	3R	8573284	8578156	CAATATGACAGTCGGAGTG		57	8573210	8573229	CAATTTGCCTCGAGATAGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mus308	FBgn0002905	FBtr0082662	1	1	1	80	3R	8535334	8535352	CTTTCTCTACAAAGCGCTG		58	8535213	8535290	AGAGCTATGTAGAAACGCT		58	NA	
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082457	1	1	6	66	3R	7417027	7417238	AAGCTAAAGATCCGAGAGG		58	7416979	7416997	AATACTCGTTGGCTACGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082207,FBtr0082209,FBtr0082206,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210,FBtr0082208	1	8	8	176	3R	5845147	5845238	ATCAATCGCTATCGTCCTG		59	5844989	5845007	ATAGTTGAGCCAGATTCGC		59	NA	
Drosophila melanogaster	50	Prat	FBgn0004901	FBtr0081764	1	1	1	60	3R	3736865	3736884	GAGGTACATACGACACATGG		59	3736824	3736842	CGTTGTTAACAAGCTCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1142	FBgn0037504	FBtr0081559	2	1	1	130	3R	3298562	3298993	TCATCAACAGAGCTGAACG		59	3298450	3298468	TTGCTTAGGGTTCAGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pbprp4	FBgn0011282	FBtr0112867,FBtr0081597	2	2	2	133	3R	3077122	3077140	ATGATAGTTTCGATGGCGA		58	3076952	3077025	CAAGACATTGGTCATCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1041	FBgn0037440	FBtr0081734,FBtr0110774	1	2	2	105	3R	2198948	2199033	GTGGAATTTGACCAAGAACTC		59	2198863	2198881	CAAGGGAATGGTCTTCTGG		59	NA	
Drosophila melanogaster	50	CG31556	FBgn0051556	FBtr0078612	2	1	1	148	3R	2134650	2134947	GACACAAGTTGGAATTGCT		58	2134520	2134538	CCACTACAGAGTCATCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7448	FBgn0037143	FBtr0078473,FBtr0078474	2	2	2	78	3L	21943709	21943727	CTTTGATGTTGGTCAGAGG		58	21943769	21943839	AAACTCAGCTGCTATTGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5976	FBgn0036999	FBtr0078199	2	1	2	61	3L	20467698	20467716	AATCTACAATCTAGGCGCT		58	20467738	20468680	TGGGATTGTAGGATATCTTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32428	FBgn0052428	FBtr0078222	3	1	1	61	3L	20465779	20465797	TGTACACCAAGAGATGTCG		59	20464244	20465755	GAAATCATTGCAGTACTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	schuy	FBgn0036925	FBtr0074899	2	1	1	200	3L	19979620	19979638	GAATAGACCTTCGTTCGTG		57	19979802	19979883	CCTTTCTGGTTGCTATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8004	FBgn0036920	FBtr0074915	1	1	1	60	3L	19920971	19920990	AATCACATGCAGAACTATGG		57	19920930	19920950	ACTGATAGACCTTCAACAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mtr3	FBgn0036916	FBtr0074918	2	1	1	60	3L	19906616	19906634	TGAGAGTCTAGACAAACCG		58	19906516	19906592	GATGAAGGTGTTTCTGGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4101	FBgn0025558	FBtr0075314	2	1	1	108	3L	16605747	16605765	CTTGCTAATCCGATACGGG		59	16605837	16605855	GGACTCCGGATTACTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7276	FBgn0036499	FBtr0075546,FBtr0075545	2	2	2	60	3L	15491663	15491681	CATTAAGATGAAGGGACGC		58	15491705	15491723	AAGCATTACGTTCACAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32110	FBgn0052110	FBtr0075931	1	1	1	60	3L	12802395	12802416	TGATCGAGGACATAAGAATCAG		59	12802437	12802455	CGATCATGGTGTTCTTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ATPsyn-b	FBgn0019644	FBtr0076405	2	1	2	117	3L	9723626	9723644	GATCTACGTCATGGAGCAC		59	9723724	9723835	TTTATCGATCTCGCCATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Lcp65Af	FBgn0020639	FBtr0077057	3	1	1	99	3L	6129817	6129835	GTTCCTGATTGTCTTCGTC		58	6129678	6129756	GCCATAGTTAAAGCTTACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11594	FBgn0035484	FBtr0073283,FBtr0073285,FBtr0073284	3	3	3	123	3L	4023613	4023693	AGTGATTACTGGACTGGAC		58	4023450	4023469	TCTACCGTACTGGTAAAGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	PebII	FBgn0011694	FBtr0072455	2	1	1	79	2R	21061596	21061614	CTAATGACTGGTAGCGCTC		59	21061535	21061553	CTAGAACCTCCTCCAACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yellow-d2	FBgn0034856	FBtr0072012	3	1	1	61	2R	19268918	19268937	GAGATGGACTATACGATCCG		58	19268961	19269033	ATGCTTGTAGTAGACGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30266	FBgn0050266	FBtr0071887	2	1	1	191	2R	18710684	18710705	GAGGATTATACAGTTCAGTCTC		57	18711094	18711192	TTTCTCCATATAGCTGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15657	FBgn0034595	FBtr0071635	3	1	1	116	2R	17035473	17035551	CATTTCGAGCATTGAACAGG		59	17035376	17035394	ATATAGTAGCCTCCCAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spn6	FBgn0028983	FBtr0086733	2	1	1	65	2R	14014683	14014701	AAGCTCAAGACTGTGAACC		59	14014730	14014748	CTTGACATGGACCTCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	grh	FBgn0004586	FBtr0090009,FBtr0090012,FBtr0090011,FBtr0090008,FBtr0090007,FBtr0090010	1	6	6	157	2R	13726937	13727109	ATGCAGACCGATAAGAAGG		59	13727229	13727248	GTATACACCTCCTCGTTCTC		58	NA	
Drosophila melanogaster	50	RpL18A	FBgn0010409	FBtr0086947	2	1	1	156	2R	13434484	13434924	CCAAGGGATTGTTGAAGGA		59	13434346	13434364	TTGAACTTCTTCAGTTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpLP2	FBgn0003274	FBtr0087105,FBtr0087106	1	2	2	93	2R	12473722	12473740	TTAAACATGCGTTACGTGG		58	12473797	12473815	CAGAGCTGAGGATCTTCTC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4282	FBgn0034114	FBtr0087144	3	1	1	87	2R	12211669	12211688	ATCTACCACAATCACGAGTG		59	12211738	12211818	TGTGTTCCTTGAGTTCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8323	FBgn0033903	FBtr0087521	2	1	1	257	2R	10053013	10053094	CATCATCAATTCCTTCCGG		58	10053733	10053751	TTCCTGGAGTAGATCTGAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13339	FBgn0033871	FBtr0087632	2	1	1	141	2R	9712657	9712728	AGAAAGTTGGACAATTGGG		57	9712833	9712851	ACTATGTTGAGGATGTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	IM10	FBgn0033835	FBtr0087654,FBtr0087655	3	2	2	65	2R	9294848	9294866	CAACACGTTTGTTAACCGA		58	9294954	9294972	AAATTGGGACCACTGATGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG4676	FBgn0033815	FBtr0087743	1	1	1	60	2R	9123702	9123721	CATCTTCAACATCACATCCA		57	9123744	9123814	CTTGCGGATACTAGTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30034	FBgn0050034	FBtr0088097	2	1	1	195	2R	7405813	7405831	GCTGAAAGCTCAATAAGGA		57	7404232	7404250	TAATGATCTTGGTCAGGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Caf1-105	FBgn0033526	FBtr0088310	2	1	1	89	2R	6355424	6355443	ATTCTAGATGACCACAAGGG		58	6355295	6355372	CATTTGTCTATCGGTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8248	FBgn0033347	FBtr0088678	2	1	1	84	2R	4807087	4807106	ATTATTTACCTGTTCGCCCT		59	4806965	4807040	TGTTCTGCGACTTGTAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14752	FBgn0033307	FBtr0088691	2	1	1	95	2R	4478001	4478019	TTATCAGTCACCACCTGAC		58	4478077	4478528	TGAATACTTTCAGGACGGAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	pk	FBgn0003090	FBtr0089043,FBtr0089044,FBtr0089042	2	3	3	96	2R	3108296	3108314	CTTATCTACTTCCACCGGG		58	3108374	3108516	CCAGGATAATCTCATCGCA		58	NA	
Drosophila melanogaster	50	CG9331	FBgn0032889	FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081418,FBtr0081419	2	5	5	237	2L	20826862	20826880	TTCGTAGTGATCGCTTCTC		59	20827142	20827499	CAACAACATTGTCAAGCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nedd8	FBgn0032725	FBtr0081192	1	1	1	92	2L	18951472	18951490	GGTAGATCGCATCAAGGAG		59	18951338	18951416	TCGTCATTCATTTGCTTGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG10336	FBgn0032698	FBtr0081095,FBtr0081094	2	2	2	61	2L	18689783	18689802	CCACTAGTTCTATGGCATCC		59	18689823	18689844	GTTGTCATTGAATAGGTCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15293	FBgn0028526	FBtr0080603	1	1	1	193	2L	14109137	14109209	CTTCTGAAGCTGAAGGGAG		59	14108962	14108980	TCCGGACCTAACTCATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5446	FBgn0032429	FBtr0080388	3	1	1	60	2L	12427509	12427527	AGAACTACTCCCTGAACAG		57	12427386	12427485	ACGTATATGGTCAGCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13134	FBgn0032182	FBtr0079968	3	1	1	175	2L	10097806	10097824	AATTTCCATCACTTCGACG		58	10096920	10096938	GATTTGCTGGCATTAACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5885	FBgn0025700	FBtr0079900	2	1	1	61	2L	9917571	9917589	TACAACAACGCCATCTACC		59	9917528	9917549	GAGTTCTTCAGGATAAAGAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pvf2	FBgn0031888	FBtr0079423	1	1	1	61	2L	7070929	7074254	AATAATCGTACCAGGGAGC		58	7070886	7070904	TCCTTTGCCATCATCAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)k09022	FBgn0086451	FBtr0079343	3	1	1	89	2L	6859532	6859550	AGATTACGTCTGTTCCACC		58	6859666	6859685	ATAATGTCCACCAAGTAGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11327	FBgn0031849	FBtr0079316,FBtr0079315	2	2	2	60	2L	6685161	6685179	AGCCCTTGAGTTTCTTGAG		59	6685119	6685139	ATGGGATAGCTAAGCTTAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr	FBgn0015623	FBtr0079251,FBtr0079250	3	2	2	80	2L	6344877	6344896	TCGCTGAGTATTGTACTGAC		59	6344939	6345042	ATTTCTCCTTTCCTTCGGG		59	NA	
Drosophila melanogaster	50	CG9117	FBgn0031766	FBtr0079222	1	1	1	68	2L	6037478	6037496	ATCACGACCTCTACATGGA		59	6037428	6037446	CATTCGAATCTAGGGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)05714	FBgn0010607	FBtr0079051	2	1	2	71	2L	4970769	4971059	GCCAAGAATATGATTAAGGGTG		59	4970719	4970737	TGAAATTATGGAGGCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15629	FBgn0031630	FBtr0077383	2	1	1	62	2L	4814827	4814845	ATTGCCCTAAACTTTGCTC		58	4814868	4815024	GGCTTCTTGATTTATATCCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	S	FBgn0003310	FBtr0077993,FBtr0077994	2	2	2	113	2L	1052484	1052574	CCCAAAGAGATTACCATACAC		58	1052391	1052409	CAGCATGATTGTGTAGAGC		58	NA	
Drosophila melanogaster	50	CG13689	FBgn0031270	FBtr0078071	2	1	1	98	2L	602910	602928	AACAGGAATAGGAGCAAGC		59	602990	603075	TATTTGAGCCACATTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tao-1	FBgn0031030	FBtr0074771,FBtr0074772	2	2	4	200	X	19471224	19471307	AAGAGATACGCTTCCTTCG		59	19471042	19471060	GATAGCTCAACCCACTGAG		59	NA	
Drosophila melanogaster	50	Pfrx	FBgn0027621	FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720	2	8	8	60	X	19402025	19402043	CGTTAAACGAGATCGATGC		59	19402067	19402085	TTCTCCTTGATTTGCTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6340	FBgn0030648	FBtr0074041,FBtr0074039	3	2	4	102	X	15380372	15380390	CATGTTCTCCAACATGGAG		58	15380456	15380474	CTAGAAAGTACGTGGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4004	FBgn0030418	FBtr0073686	2	1	2	60	X	12638835	12638853	AAAGGTACAGGAATCGGTC		58	12638877	12638895	ATCCATCAGATGAAACCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15729	FBgn0030399	FBtr0073664	2	1	1	78	X	12458361	12458379	CCATCTCAACTGGGATCTG		59	12457241	12457259	GATTATGTTGCCACCACTG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG9817	FBgn0030219	FBtr0071509	1	1	1	82	X	10499367	10499385	AGGAGAACAGCATAATGCC		59	10499205	10499223	GTACATCAGGTCGATCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	pod1	FBgn0029903	FBtr0070965,FBtr0070968,FBtr0070967,FBtr0112956,FBtr0070964,FBtr0070966	3	6	6	82	X	6700767	6700786	TGGTTTGATGTACTCCACAG		59	6700828	6700925	GCTCATTGTTCGAGAATATCTC		59	NA	
Drosophila melanogaster	50	CG12179	FBgn0025388	FBtr0070694	3	1	2	95	X	4529349	4529367	GTCTGTCCTTAAGTCACAC		57	4528414	4528994	GAATGATGATTAGTCCGTCTG		58	NA	
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177	3	4	5	149	X	938609	938687	CAATCTGGATAAGGCTCCT		58	938800	938818	CTATCTGGCATACCTGGTC		58	NA	InUTR
Drosophila melanogaster	50	CG2003	FBgn0039886	FBtr0085870,FBtr0085871	3	2	2	98	3R	27815033	27815051	GAGGAGATTCCTAAGACGG		58	27815170	27815188	GTTTAGCTGGAGGACTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mtl	FBgn0039532	FBtr0085191,FBtr0085192,FBtr0085193	1	3	3	140	3R	23464015	23464106	ATCATTCTAGTTGGCACCA		58	23464210	23464228	CTCCATGTATTTCACAGCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG31225	FBgn0051225	FBtr0084414	3	1	1	60	3R	19307742	19307760	CTCTGATAACTCAACGGCT		59	19307784	19307802	GCGTCTTAGATAGTGAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31156	FBgn0051156	FBtr0084277	2	1	2	80	3R	18436492	18436511	GGAGGACAACTACAGAATCC		59	18435191	18436450	TTCTCCGACAATACTTTCCA		58	NA	
Drosophila melanogaster	50	CG7708	FBgn0038641	FBtr0083669,FBtr0083668	3	2	2	103	3R	14509015	14509033	TTCTGTCCTATGTTGCAGC		59	14509229	14509248	CTTGTAATCTGTCTCGTTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083641,FBtr0083643,FBtr0083645	3	3	13	90	3R	14340833	14340851	GAACATCGAAACGGATGTG		59	14261500	14340779	GTCAGTGTTGTACCTAGGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Keap1	FBgn0038475	FBtr0083423,FBtr0083424,FBtr0083422	3	3	3	83	3R	12901902	12901980	GAAATTTCACTCAGGTGTGC		59	12901838	12901857	GTTCATCCCTTCGTATCAGG		59	NA	
Drosophila melanogaster	50	Dad	FBgn0020493	FBtr0100160,FBtr0083394,FBtr0083393	2	3	3	82	3R	12894608	12894696	CTTTGAAACCAATAGGGCTG		59	12894740	12894759	TAATGCTGAAGTAGTCGACG		59	NA	
Drosophila melanogaster	50	Gr85a	FBgn0045473	FBtr0082216	2	1	1	60	3R	5821887	5821905	ATCCTAGCTGAGATAACCC		57	5821845	5821863	GGAGTACCATCTTCAGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31453	FBgn0051453	FBtr0081898	3	1	1	68	3R	4386926	4386944	CTCATCTACGAGACAGGAC		58	4386813	4386831	TTCAGAGAACATCAGTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078818	3	1	15	120	3R	1121454	1121474	TAGACGATGAAGACAAGAAGG		59	1120593	1121372	AAACAATAGCGGTCTTTGC		59	NA	
Drosophila melanogaster	50	CG34357	FBgn0085386	FBtr0112568	1	1	2	132	3R	340837	348723	TATCTATATTGGCGCTGCA		58	340723	340741	TGTGAATTCCAGGAGAGTG		58	NA	
Drosophila melanogaster	50	CG6597	FBgn0036967	FBtr0074838,FBtr0074837	1	2	2	84	3L	20296376	20296394	ACATGGATCATGGTCAACC		59	20296442	20300945	AATCTGATATGGCGTCTGC		59	NA	
Drosophila melanogaster	50	l(3)neo26	FBgn0036815	FBtr0075057,FBtr0075056	2	2	2	66	3L	18814990	18815008	TTCAGCCGATTCCAAAGAG		59	18815035	18815056	CCCATCAAGTAAATATCCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32056	FBgn0052056	FBtr0076303,FBtr0076301,FBtr0076302	3	3	3	86	3L	10214550	10214568	TTCTTCGGCATCAATTTCC		58	10214221	10214501	GAACATGGCATCTATGAGGA		59	NA	
Drosophila melanogaster	50	CG32046	FBgn0052046	FBtr0076408	3	1	2	219	3L	9731226	9731245	TAACGGATCTACGTAGACAG		58	9729084	9730038	AATTGTAGTCTGGACAAACC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG8012	FBgn0040832	FBtr0076699	2	1	1	226	3L	8208607	8208625	AGTCATGTTGGTCAAGGTC		59	8208883	8208901	AGTAGTATGGATACGTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eps-15	FBgn0035060	FBtr0072435,FBtr0072434	1	2	3	116	2R	20657578	20659259	TTCGACAATAAGCTCCACC		59	20657480	20657498	TAGCAATGACGATCCACTG		59	NA	
Drosophila melanogaster	50	CG10339	FBgn0034972	FBtr0072288	2	1	1	62	2R	19967654	19967672	ATCATACAGTCCGACTCGA		59	19967610	19967628	ATACAAGCAGTTCTCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HmgZ	FBgn0010228	FBtr0071673,FBtr0071674	2	2	2	165	2R	17585805	17585906	TGAAGGATAAGACCGAGTG		58	17585658	17585676	GAGGACTCTTTCTTCTTGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG3420	FBgn0033100	FBtr0086135	1	1	1	60	2R	2644052	2644070	GAGTTCCTGAAGATCAAGC		57	2643949	2643967	AGTAGTCTCCCGACTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13082	FBgn0032803	FBtr0081251	1	1	1	60	2L	19538749	19538767	CAATCACGTATGATCAGCG		58	19538791	19538809	AAGTTCTCCAGATCAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ddc	FBgn0000422	FBtr0081168	1	1	3	60	2L	19119231	19119249	ACATCAAGATCGACATGGA		58	19119189	19119207	AAGTCGACCATTGTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017	1	6	12	101	2L	17651479	17652674	TCTGATACTACTCGTCTTGGT		59	17651398	17651416	TTGATGATATTCTCGCGCA		59	NA	
Drosophila melanogaster	50	CG31717	FBgn0051717	FBtr0079977	3	1	1	60	2L	10250970	10250989	TCTGTCGTTCTTCAAATCCC		59	10251012	10251030	TCCATCGCATGATATCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rost	FBgn0011705	FBtr0079782	3	1	1	83	2L	8986656	8986674	GGTGTACGGAATGAGTCTG		59	8986522	8986610	TTGCCAAATTCATCTGTTCC		59	NA	
Drosophila melanogaster	50	fy	FBgn0001084	FBtr0079712	2	1	1	84	2L	8401853	8401871	TTCTTGTTGTTTGTGGCAG		59	8401728	8401749	ACTTCTCCTGGAGTATATTAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	3	7	8	167	2L	119224	119296	ATAATGCAGACTGATGTCCTG		59	119020	119038	TTGAGCCATGGTGTTTAGG		59	NA	
Drosophila melanogaster	50	CG17450	FBgn0040028	FBtr0070057	3	1	2	227	X	21478739	21478757	ATCCAGGTGAAGCATATGC		59	21478407	21478548	GTTGCGATTCATGTTCGAC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG32533	FBgn0052533	FBtr0074786	1	1	1	61	X	19368797	19370159	TTACGACAAGCTGGATGAC		59	19368754	19368772	TATCGTCACTTGAATGGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9522	FBgn0030587	FBtr0073986	2	1	1	144	X	14742526	14742690	CATTCTTCAGCGATGTTCC		58	14742400	14742418	ACTATGTTCTCCACTCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34133	FBgn0083969	FBtr0110887,FBtr0110888	2	2	2	96	3R	25698194	25698268	GAAGCTCTACACGCTATCC		59	25698327	25698346	ATGTTCATCTGTTTGAGCAC		58	NA	
Drosophila melanogaster	50	Sas	FBgn0038045	FBtr0082588	1	1	1	74	3R	8252668	8252792	AGAGATCGTTGGAGTTCCT		59	8252830	8252848	GAAAGTTGTTTGCGTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CoVa	FBgn0019624	FBtr0082473	1	1	2	243	3R	7645124	7645288	GCGACAGTTATAAACGTGTC		59	7645560	7645578	TGAAGTACTTCTCGTAGCG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Snm1	FBgn0037338	FBtr0078688	3	1	1	83	3R	1382370	1382388	TGCTAACAGAAGATCGCAG		59	1382433	1382510	TAAAGTAATCGACTAGGCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11109	FBgn0037200	FBtr0078552	3	1	2	66	3L	22865434	22865542	CCTTAAAGTGAATTCTGCTGC		59	22865570	22865588	GGTGACTTTGGGAGTAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr76Bc	FBgn0036880	FBtr0113180	2	1	1	180	3L	19516472	19519135	CATTATGAGCATCAGGGCT		59	19519279	19519297	CATTGAATCCCTTCTTGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	gdl-ORF39	FBgn0028377	FBtr0091756	1	1	1	62	3L	15503331	15503723	GGTTAATGACCAACAATCCA		58	15503748	15503766	TTCTCGGTGACATAGAAGC		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG32141	FBgn0052141	FBtr0075735	3	1	1	60	3L	14197147	14197167	ATTTGCTCTAACAGATCAGGG		59	14197186	14197207	CGCTATATTAATGTGCTTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15829	FBgn0035743	FBtr0076913	2	1	1	72	3L	7122060	7122152	CTTTGAGGAGATCGTCGAG		59	7122188	7122206	GTAGAACTCGAGGAACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7386	FBgn0035691	FBtr0076999	2	1	1	75	3L	6184215	6184291	CGAATGCAAGGTTTGTGAC		59	6184328	6184348	GCTCTTCTCATGAATCTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lcp65Ae	FBgn0020640	FBtr0077056	2	1	1	145	3L	6131005	6131083	CTTTCAGTGGTCCTTCGAG		59	6130878	6130896	AGTTGACTTCGTAGGTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9822	FBgn0034623	FBtr0071612	3	1	1	153	2R	17234695	17234782	TAAGCTGACCAAAGACCTC		58	17234560	17234579	ATAGACACTGGCATAGTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18538	FBgn0034324	FBtr0086760	1	1	1	65	2R	14184841	14184914	GATGAAACCATGGTACGTC		58	14184943	14184961	TTGTAGTCGCTGACATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8102	FBgn0034007	FBtr0087393	1	1	2	114	2R	11185411	11185486	AGCAGTGGGAATTTCTACG		59	11185315	11185333	TCATGTCGCAGGATATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18812	FBgn0042135	FBtr0088937	1	1	3	282	2R	3609632	3609650	CAATGCTAGAAGGCATGAC		58	3607269	3607349	ATCAGATATAGCAAGGCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	Cyt-b5	FBgn0033189	FBtr0088906	3	1	2	77	2R	3422593	3422847	TTAAATCTCATCCCGGTGG		59	3422888	3422906	CAACGTCCTCAAAGTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lectin-galC1	FBgn0016675	FBtr0081201	3	1	1	66	2L	19417485	19417503	TTACATTGCTGGTCATAGC		57	19417532	19417620	CCTTCGTTTACTTGTATGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14346	FBgn0031337	FBtr0077926,FBtr0077927	2	2	2	186	2L	1368291	1368309	TGAGCACTTACACATACGA		58	1368597	1368615	GTTAGCTCGATCACAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	pncr004:X	FBgn0047095	FBtr0091949	1	1	1	60	X	19068744	19068762	TGTTGTTTGATTTCGCGAG		59	19068702	19068722	ACCAACAGTCCATAGATTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1503	FBgn0031157	FBtr0077260	2	1	1	60	X	20976805	20976823	CTACTACGCCTACCTTCAG		58	20976763	20976781	ATTCAGGAAGTGCAAATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1532	FBgn0031143	FBtr0077268	2	1	1	65	X	20898775	20898794	ATAACTATGGAGTGAGCAGC		59	20898013	20898031	CCTTGGAGTGTATGGTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15452	FBgn0031130	FBtr0077292	2	1	1	60	X	20616310	20616328	ATGCACAATCCACTAAGTC		57	20616268	20616288	CATTAATGTACTGGAGTCGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12534	FBgn0031068	FBtr0074794	1	1	1	105	X	19643188	19643206	GATGGATAAGGAGCACCAC		59	19643275	19643293	CTTGAAATCGTTGCAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0156	FBgn0027291	FBtr0074780,FBtr0074781	2	2	2	91	X	19413855	19413945	GAACATTATGCGCATGTCC		59	19413782	19413802	GATACTTCTCTTCGAACTGGA		58	NA	
Drosophila melanogaster	50	l(1)G0003	FBgn0027335	FBtr0074616	1	1	1	103	X	18531740	18531758	AATTGGTCACGAGAAGTCG		59	18531594	18531673	TTAGCATTAGTTCCTCGCG		59	NA	
Drosophila melanogaster	50	Bx	FBgn0000242	FBtr0074598,FBtr0074597,FBtr0074599	3	3	3	179	X	18461161	18461553	GACTACTTGAGATTGTTTGGC		59	18464621	18464639	TATCTTGTTCTCGCACAGG		59	NA	
Drosophila melanogaster	50	GalNAc-T2	FBgn0030930	FBtr0074624,FBtr0074625	3	2	2	175	X	18392114	18392132	GATCATCCTGGTGGATGAC		59	18391515	18391533	CCAAGAAGACGATCACCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	ari-1	FBgn0017418	FBtr0089507,FBtr0089506,FBtr0089508	2	3	3	121	X	18027372	18027391	TACAATCGCTACATGAACCA		59	18027209	18027288	AGAAACTGCACCTCAATCC		59	NA	
Drosophila melanogaster	50	CG15373	FBgn0030889	FBtr0112999	1	1	2	80	X	17938961	17939061	CGGGATATGGAAATTGATAGAC		58	17939102	17939120	AAAGGTCCAAACGAAACTC		58	NA	
Drosophila melanogaster	50	CG6788	FBgn0030880	FBtr0074495	2	1	1	141	X	17782426	17782444	ATGTCGGAAACCATCAAGG		59	17782549	17782567	GACACTCACTTCGAAGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12995	FBgn0030826	FBtr0074401	2	1	2	63	X	17104096	17104114	GTATTTGCGGTCGAATGTG		59	17104051	17104069	ATTTACTGCTACCAACTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAP15B	FBgn0030808	FBtr0074378,FBtr0110990	1	2	2	80	X	16847419	16847438	GTTTGATCTTCGTAAGCGAG		59	16847480	16847558	TCTCCTTTAGCACTATGCAG		59	NA	
Drosophila melanogaster	50	CG4875	FBgn0030801	FBtr0074340,FBtr0074341	2	2	2	82	X	16778983	16779003	TCTAAAGTCCCAAGAGATCCT		59	16779047	16779124	TATTGTCGTCGATGAGCAG		59	NA	
Drosophila melanogaster	50	r	FBgn0003189	FBtr0089734	2	1	2	163	X	16554458	16554476	TTCCAGATACCCAAGAACG		58	16554667	16559231	ACGGATTCCACATTAACTCC		59	NA	
Drosophila melanogaster	50	CG9723	FBgn0030768	FBtr0074376	3	1	1	63	X	16548650	16548668	ATTATTCCCAGTACGGTGG		58	16548605	16548624	GATTGCTTGTCCTTGTAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13014	FBgn0030759	FBtr0074282	3	1	1	103	X	16482296	16482314	CTTTGGGATCTACTTTGGC		58	16482381	16482399	AGTAACGTCTCGACTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	disco	FBgn0000459	FBtr0100384,FBtr0074250	2	2	2	67	X	16107028	16107046	AGAAACGAGTACAGTGCTC		59	16106979	16106997	AAAGTGAATCTTAAGGGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9172	FBgn0030718	FBtr0074151,FBtr0074152	1	2	2	82	X	15880262	15880280	AAGGTCTACGACCAAATGC		59	15880198	15880216	GAGTAATGGTAGTAGCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycD	FBgn0010315	FBtr0074163,FBtr0074164,FBtr0074165	1	3	3	60	X	15801699	15801718	GTCTGATGACCGATCTAACC		59	15801596	15801614	ATGTGCAGCATACAATCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6227	FBgn0030631	FBtr0074011	2	1	1	130	X	15241248	15241268	AAGAACTTCTATGTCGAGGTG		59	15241360	15241519	TGTGCCCAAGTCTTAATGG		59	NA	
Drosophila melanogaster	50	CG15745	FBgn0030469	FBtr0073758,FBtr0073759	3	2	2	61	X	13200447	13200466	TATTCGGATGACATAACCGC		59	13200490	13200508	TGCAGACGAAAGTATTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15744	FBgn0030466	FBtr0073756	2	1	1	149	X	13182934	13183008	TTAAGTTGCTCGACCTGTC		59	13183121	13183139	GTTTCTTTAGCGGCATACC		58	NA	
Drosophila melanogaster	50	lic	FBgn0015763	FBtr0073720	3	1	1	103	X	12985990	12986008	GGTCTTCCTTCACGATCTG		59	12986160	12986179	GAATGACTTTCAGTTGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18646	FBgn0030444	FBtr0073719	1	1	1	80	X	12967046	12967065	TCCATACGGAACAAGAACAC		59	12967108	12968458	GCTGTCCCTGTAATCTGTC		59	NA	
Drosophila melanogaster	50	p24-1	FBgn0030341	FBtr0073604	1	1	1	69	X	11745766	11745784	TTATGGTCTGGTCATCCCT		59	11745715	11745733	CTCAGCACCATAATCTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2145	FBgn0030251	FBtr0073387	2	1	1	94	X	10822730	10822748	CATCCAAGTGAATCTGCAG		58	10822883	10822901	ATTCAAGGGCTTTCGAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tango5	FBgn0052675	FBtr0071501,FBtr0071499,FBtr0071500	1	3	3	107	X	10655691	10655709	CACGTTTCTGCTCTATCTG		57	10655534	10655623	CAGATAATATCATCGGGATACG		57	NA	
Drosophila melanogaster	50	CG15311	FBgn0030182	FBtr0071436	3	1	1	165	X	10083514	10083533	ATTTGGAATCTGCATTGCAG		59	10085244	10085262	TGCCTCTTCAGATAGTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32685	FBgn0052685	FBtr0071489	1	1	1	83	X	9967962	9967980	ACATCAAACTGGACGTGAG		59	9967432	9967915	ATGCATTATCGTCCGTAGC		59	NA	
Drosophila melanogaster	50	CG2989	FBgn0030171	FBtr0071416,FBtr0112972	3	2	2	121	X	9924353	9924447	TTGCATAAATGAAGCCAGC		59	9924531	9924550	AATGTGTACACAGGTATGGA		58	NA	
Drosophila melanogaster	50	l(1)G0320	FBgn0028327	FBtr0071372	1	1	1	60	X	9446549	9446567	AGGAATTCGTGATCGAGAC		59	9446507	9446526	AAGTAGTTGAAGTCCATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12124	FBgn0030112	FBtr0071332	1	1	1	226	X	9131715	9131733	AATATACCCAAGAAGCGGA		58	9131433	9131525	ATCGGAGCTGAATTGATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0071296,FBtr0071294	1	2	6	83	X	9003012	9005126	AATCGCAGATTTAATCCAGC		58	9005172	9005433	CGTAGGCATTCTGACTCTC		59	NA	
Drosophila melanogaster	50	CG2004	FBgn0030060	FBtr0071281	2	1	1	204	X	8607808	8607826	GATATTCTTCCGCAACGAG		58	8607429	8607640	GTAGTCTTGACGTACAGGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11265	FBgn0030049	FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964	2	4	4	142	X	8459065	8459083	AATGATATCGGTCGAAGCA		58	8459189	8459419	ATGATTCGACCCAGTATCG		58	NA	
Drosophila melanogaster	50	Es2	FBgn0023506	FBtr0071198	3	1	1	60	X	8357165	8357183	AACGTTACCATTGATACGG		57	8357206	8357225	GTTTAGTGGGTATCTTGAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1632	FBgn0030027	FBtr0071170	2	1	1	106	X	8162737	8162822	CTGGGATATGAATCCGTGG		59	8162892	8162910	CGTATGAAGCTGATCTCCG		59	NA	
Drosophila melanogaster	50	Trxr-1	FBgn0020653	FBtr0071168,FBtr0071167,FBtr0071169	1	3	3	61	X	8140427	8140445	ACATCAAGTCCGTCAACTG		59	8140468	8140558	GATGTACTCCACTTTCTTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Ubc-E2H	FBgn0029996	FBtr0071114,FBtr0071112,FBtr0071113	3	3	3	64	X	7983664	7983684	TGTGAACAAGATCTACCATCC		59	7983620	7983638	TGATAACATCCAGGCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2256	FBgn0029995	FBtr0071115	1	1	1	86	X	7978305	7978323	CTCAAGAAGTTCGACCTGG		59	7978182	7978200	CTCGATTAGCAATGGTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	l(1)G0193	FBgn0027280	FBtr0071130	3	1	2	83	X	7837252	7837726	AGCCATGATAGTGTCTACC		58	7837187	7837207	GCTATATCCGCATATAGTGAG		57	NA	
Drosophila melanogaster	50	CG12689	FBgn0029952	FBtr0071081	1	1	1	60	X	7479870	7479891	CAACCAAACAGAGTTAATTCCC		59	7479831	7479851	CACATTCTGCATTAGCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9657	FBgn0029950	FBtr0071057	1	1	1	60	X	7315225	7315243	CATTAGATGGTGCCATCAG		57	7315329	7315347	TACGATATGCGATACAGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14427	FBgn0029931	FBtr0071010	1	1	1	60	X	6935386	6935404	AAGGTGGATTTCGAGAAGG		59	6935428	6935446	CTAGCAATTGGTAGGTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	2	8	8	173	X	6579447	6579465	ACAACGTCTTCCACTACAG		59	6579602	6579683	AATTCGCTGGAGAAGTCAC		59	NA	
Drosophila melanogaster	50	Tsp5D	FBgn0029837	FBtr0114466,FBtr0070888	2	2	2	147	X	5964737	5964899	CCTGGTATTGTACTTTATGCTG		58	5964611	5964629	ATCGCTGCTGTTATAATGC		58	NA	
Drosophila melanogaster	50	Tsp5D	FBgn0029837	FBtr0114466,FBtr0070888	3	2	2	148	X	5964737	5964899	CCTGGTATTGTACTTTATGCTG		58	5964610	5964629	GATCGCTGCTGTTATAATGC		59	NA	
Drosophila melanogaster	50	CG15930	FBgn0029754	FBtr0070754	2	1	1	176	X	5210055	5210142	TGATCTAAACTGGTTCTATCGC		59	5209900	5209921	TCCACATACTCTATGTTCACAC		59	NA	
Drosophila melanogaster	50	HLH4C	FBgn0011277	FBtr0070691	1	1	1	60	X	4540329	4540349	CTTAGTCGCTACTATCTGGTC		59	4540289	4540307	CCAGATGCGGATTATTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15579	FBgn0040906	FBtr0070657	1	1	1	233	X	4205674	4205692	CGTATTCCATCGTCCACTC		59	4205459	4205477	CTTAGCATTGCTTTCGCTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vap-33-1	FBgn0029687	FBtr0070619,FBtr0070618,FBtr0070616,FBtr0070617	1	4	4	95	X	3846066	3846153	GAGGATAAGTTTAAGCCATCCA		59	3846209	3846227	TTCAATGTTGCATTCACGC		59	NA	
Drosophila melanogaster	50	CG2947	FBgn0029676	FBtr0100247,FBtr0070598,FBtr0070597	2	3	3	60	X	3685529	3685548	GTAACATCACAAAGTACGCG		59	3685569	3685589	GGCACAATCTTCTTGATAAGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2875	FBgn0029672	FBtr0070586,FBtr0070587	2	2	2	67	X	3466639	3466657	ACTTTCTCATGGACTCCCT		59	3466528	3466546	AAAGATTCCCTGAAGAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13021	FBgn0029669	FBtr0070570	3	1	3	109	X	3408477	3409288	TACTGTGGAAACTTGGTGTC		59	3409360	3409378	AATCGTCCCAATCCTTTGG		59	NA	InUTR
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514	1	9	14	83	X	3215176	3215194	TCTATATCGCTCCGATTCG		58	3215240	3219968	TCTTTAAACCTTTCGCTAGC		58	NA	
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070522,FBtr0070511,FBtr0070514	3	14	14	87	X	3232771	3232789	CTACCAGAGCATGATACCG		59	3232840	3233011	AAGGGTTACTTGAAAGCGT		59	NA	
Drosophila melanogaster	50	crm	FBgn0000376	FBtr0070495,FBtr0070496	1	2	2	80	X	2629130	2629220	GGGATATACTGGATCCGTC		58	2629068	2629086	CGATTTCCTGGAACTTGTG		58	NA	
Drosophila melanogaster	50	CG11596	FBgn0023522	FBtr0070319,FBtr0070318,FBtr0070320	1	3	3	60	X	1823156	1823174	TAAACCGATCATCGACAGC		59	1823198	1823289	ATCCTTCAGCTCGAAATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Adar	FBgn0026086	FBtr0070299,FBtr0100557,FBtr0070300	1	3	3	71	X	1672938	1672956	AATTGGAGTCACAGACTGG		59	1672991	1673138	ATTTCTGTCCATCGACCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	pck	FBgn0013720	FBtr0070256,FBtr0070255	3	2	3	84	X	1365310	1365329	TTTAAGGACTTCGTGTACCC		59	1365376	1365453	TAACGTAATACTCGTGCGA		58	NA	
Drosophila melanogaster	50	CG14627	FBgn0040361	FBtr0070199	3	1	1	68	X	1076442	1076460	AGATGGAGACCAACTTCAC		58	1076492	1076510	GAGTAGACGGTAAACTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14629	FBgn0040398	FBtr0070179	1	1	1	60	X	945945	945963	GTCTTCGAGAAGTATTGCC		57	945986	946005	CGTTGAAGTTCTTCAGACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	svr	FBgn0004648	FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070082	3	5	7	107	X	396959	398709	GAACTTTGATGGCAACTTCC		59	398778	398797	TGGTGTTCGTATTTAGTCGG		59	NA	
Drosophila melanogaster	50	CG41558	FBgn0085689	FBtr0114138	2	1	1	106	U	4953229	4953247	TAAGAGACGTGATGAGCTC		58	4953141	4953159	CCATCTCGGAGACAAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41559	FBgn0085690	FBtr0114139	3	1	1	71	U	4512680	4512698	TGTTAAGAACCCACTCGAG		58	4512627	4512646	TAGAACTTGTCATCAACCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40196	FBgn0058196	FBtr0113830,FBtr0113829,FBtr0113831	2	3	3	120	U	1092307	1092325	CAGATCTAAGTTGCGATCC		57	1092152	1092224	TAAAGAGAATTCACTGCTCG		57	NA	
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089212,FBtr0089210,FBtr0089215,FBtr0089211,FBtr0089213	2	6	7	151	4	1080458	1081052	ATGAAATGCCTCAGGTTCC		59	1080325	1080343	TTGAGTATCAGCAACTCCG		59	NA	
Drosophila melanogaster	50	CG32016	FBgn0052016	FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232	2	6	6	143	4	974514	974653	CTCTCAAGAATTGCATTCGC		59	974390	974408	CTTGGTGATTGCGTATCCT		59	NA	
Drosophila melanogaster	50	Ephrin	FBgn0040324	FBtr0089078,FBtr0089075,FBtr0089077,FBtr0089076	2	4	4	82	4	596941	597612	TAACGGAAACGATGACCAC		59	597655	597676	CACCACTATTATAGGTCAGCTC		59	NA	
Drosophila melanogaster	50	pncr002:3R	FBgn0063127	FBtr0091948	1	1	1	60	3R	2525497	2525516	GAACTAAGAGCTAAGGCTCC		59	2525456	2525477	ATGAGTACCAATAGGTGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	1	14	14	90	3R	27691897	27691915	ATACTGCACCAGATCTTCC		58	27691743	27691843	GATATTGGATGAGGGCCTG		59	NA	
Drosophila melanogaster	50	CycG	FBgn0039858	FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799	2	5	5	91	3R	27426460	27426478	ACATCAAGGAGTCGTACAC		59	27426317	27426407	ATCAGGAATCCTCATGTACTG		58	NA	
Drosophila melanogaster	50	spn-F	FBgn0086362	FBtr0085760	3	1	1	60	3R	27081516	27081535	CAGTGAGGAACTAGGTTACC		59	27081558	27081576	TGGTTCACTAGTGGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	su(rdgB)69	FBgn0086704	FBtr0085782,FBtr0085781	3	2	2	154	3R	26987045	26989273	CATACTGCTGAGATACGGC		59	26986909	26986927	CAATCATGACCACATTGCG		59	NA	
Drosophila melanogaster	50	Aph-4	FBgn0016123	FBtr0085734,FBtr0085733	2	2	2	95	3R	26877609	26877627	CGATCCCATGTTCTACGAG		59	26877746	26877764	ATGTTGGAGCTGTTCTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31012	FBgn0027598	FBtr0085704,FBtr0085706,FBtr0085707,FBtr0085705	1	4	4	135	3R	26650595	26650683	AGTTCCTATGACTGGTAACCT		59	26650778	26650798	TTCAGGTAGTTGATTAGCACC		59	NA	
Drosophila melanogaster	50	PH4alphaNE3	FBgn0051017	FBtr0085667	3	1	1	101	3R	26430476	26430553	AATGTTCGGTTCAACTCCA		59	26430617	26430636	GGTTATCCACTGTAATGCCT		59	NA	
Drosophila melanogaster	50	Axn	FBgn0026597	FBtr0085554,FBtr0085553,FBtr0085555	3	3	3	95	3R	25858740	25858816	CACCTTTCAGGTGATACCTC		59	25858874	25858892	AACTTGGGTATCAGCAAGG		59	NA	
Drosophila melanogaster	50	CG15523	FBgn0039727	FBtr0085505	3	1	1	80	3R	25768409	25768489	TTCCTATGCCAGTAAGCAG		59	25768532	25768551	AATGCAGGAAAGTTTCATGC		59	NA	
Drosophila melanogaster	50	ppk19	FBgn0039679	FBtr0085451	3	1	1	112	3R	25499302	25499322	CACTTCGTTGACTTATAACCG		59	25499396	25499463	GAACTCCATCAATGGGAGG		59	NA	
Drosophila melanogaster	50	Brd8	FBgn0039654	FBtr0085394	3	1	1	63	3R	25050948	25050966	GAAAGTAGCTCCCAAGGAC		59	25050992	25051011	GATCTATTAGTTCCGGCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11899	FBgn0014427	FBtr0085390	1	1	1	179	3R	25026879	25026897	GTTTGGCGTTATCTATGCG		59	25027040	25027114	ACATAGATGCCAAAGGTCG		59	NA	
Drosophila melanogaster	50	CG14509	FBgn0039647	FBtr0113303,FBtr0113304	1	2	2	146	3R	25004530	25006888	AGAGTTCGATTATGCCAGTC		59	25004403	25004421	TCATAGTGATTGGTGACGG		59	NA	
Drosophila melanogaster	50	CG1957	FBgn0027873	FBtr0085358,FBtr0085357	3	2	2	60	3R	24862476	24862495	ACGATGAGATTCCTATCCAC		58	24862517	24862536	TTAAAGTCGGACAGTTTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Moca-cyp	FBgn0039581	FBtr0085286,FBtr0085287	1	2	2	110	3R	24168519	24168608	CGAGATACCAGAGGTATCGA		59	24168681	24168699	TGATCTTTGCCTCGATCAC		59	NA	
Drosophila melanogaster	50	CG33213	FBgn0053213	FBtr0085271	3	1	1	60	3R	23744605	23744623	GGTATTTACCAGAGGAACG		57	23744563	23744581	AATTTGTCGGAATTGGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12428	FBgn0039543	FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236	3	5	5	150	3R	23529755	23529773	ATCCGATGTACACCAAGAG		58	23529567	23529642	TTAATGAACACAGCTTCCGA		59	NA	
Drosophila melanogaster	50	CG6330	FBgn0039464	FBtr0085085	3	1	2	148	3R	22777615	22778738	AAAGGATAACGCGGTACTC		59	22777130	22777504	CATGCAAACGAACTTAACGT		59	NA	
Drosophila melanogaster	50	Tl	FBgn0003717	FBtr0085059	2	1	2	148	3R	22652406	22663446	AGTTCTGAGCAAGTGAACC		59	22663558	22663576	CTATGCTCATCTCACTGCA		59	NA	InUTR
Drosophila melanogaster	50	boss	FBgn0000206	FBtr0084949	2	1	1	99	3R	21790534	21790554	TTGGCAATAAGCTAGCTAGTC		59	21790615	21790754	CTGTTTGGTAAGTCTGCCA		59	NA	
Drosophila melanogaster	50	CG8934	FBgn0039391	FBtr0084945	1	1	1	68	3R	21739496	21739514	TATCCGCAACCTACTACGA		59	21739603	21739621	GAACCAATTGATCCTTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17370	FBgn0039381	FBtr0084909,FBtr0084910,FBtr0084911	3	3	3	90	3R	21711544	21711628	GGAACCAACGGATAAATTCG		59	21711680	21711699	GAAGAACATGATGAGCAGTG		58	NA	
Drosophila melanogaster	50	CG11891	FBgn0039309	FBtr0100221,FBtr0100223	3	2	3	81	3R	21098640	21098715	CAGATCCTTCTATGCTGCC		59	21098760	21098778	ATCCATTGATGCCTCTTCC		59	NA	Nonspecific
Drosophila melanogaster	50	CG11854	FBgn0039299	FBtr0084811	1	1	1	147	3R	21068233	21068251	ATTCACAAGGGATCTCAGC		59	21068362	21068442	CTTTGTTCTAGTGAGGCGT		59	NA	
Drosophila melanogaster	50	CG31108	FBgn0051108	FBtr0084802	2	1	1	95	3R	20941041	20941059	AATTTACTCTGGACGGGTG		59	20940902	20940982	CATTTCGTAGGACCTAGGG		58	NA	
Drosophila melanogaster	50	CG34349	FBgn0085378	FBtr0112558	1	1	2	94	3R	20883617	20885942	AGTGATGAATGTCACAGATCTC		59	20885997	20886015	CCAAACTGTTTGTGCACTC		59	NA	
Drosophila melanogaster	50	CG11120	FBgn0039250	FBtr0084717,FBtr0084716	3	2	2	129	3R	20749906	20749925	GAAGACATTGATAAGCGCTG		59	20750067	20750148	GTATAACACCTCTATTGGGCT		58	NA	
Drosophila melanogaster	50	CG18669	FBgn0040599	FBtr0113329	3	1	1	176	3R	20192827	20193111	CAGCTGATGAGTCAAATCAC		58	20192670	20192688	CCACAATTGACGCTTTCTG		59	NA	
Drosophila melanogaster	50	CG5706	FBgn0039175	FBtr0084637	3	1	1	75	3R	20077895	20077913	CTCTGTTTAGAGGGCTTGG		59	20077772	20077790	CCACAAACTGGAACTTAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	p38c	FBgn0046322	FBtr0084582	3	1	1	60	3R	19974969	19974987	GGATCTTATTGAGCCACAC		57	19974927	19974947	GAAGTTCTGATCATAGACTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	KrT95D	FBgn0020647	FBtr0084508,FBtr0084507,FBtr0084506	2	3	3	104	3R	19824628	19824646	GGATAAGGAGCGTGATCTC		59	19824481	19824560	TCAATGTACACTCGCAGTG		59	NA	
Drosophila melanogaster	50	CG33108	FBgn0053108	FBtr0084504	3	1	1	60	3R	19822900	19822918	TGTAGGTTATCTGGTGGAC		57	19823000	19823018	AGATTTACCATGACGAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	eIF-3p66	FBgn0040227	FBtr0089622	3	1	1	137	3R	19507104	19507122	TTAAGACTGGAGACCAGGA		59	19507223	19507317	CTACCAGGACAATATCGCT		58	NA	
Drosophila melanogaster	50	CG4467	FBgn0039064	FBtr0084390,FBtr0110801	3	2	2	90	3R	19057621	19057639	GAAGTGGATCTTTCCAGTC		57	19057480	19057568	CACATTGAAGGTTACATCCA		57	NA	
Drosophila melanogaster	50	CG7054	FBgn0038972	FBtr0084254	2	1	1	63	3R	18291005	18291023	CATAGTACCCGATGTGCTG		59	18291050	18291068	GTCATCGCCATAGATGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5778	FBgn0038930	FBtr0084182,FBtr0113265	2	2	2	60	3R	17911480	17911498	GGTGGAGGATACTACAACG		59	17911438	17911456	CCGAATATACTGGACGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067	2	1	22	80	3R	17200833	17200851	CAGTCCCAGAACTACAGTG		59	17181269	17200791	TTCACCTAAATCTTGAGCCTC		59	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084073	2	1	22	81	3R	17200833	17200851	CAGTCCCAGAACTACAGTG		59	17198791	17200788	TGATCTCCGTATCTTGAGC		58	NA	
Drosophila melanogaster	50	CG31207	FBgn0051207	FBtr0084044	2	1	1	60	3R	16872077	16872097	TGAAGATATACGAGCTAACCC		58	16871973	16871991	TTGTCTAGCCAGAATACCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17838	FBgn0038826	FBtr0113255,FBtr0083959	1	2	8	88	3R	16628266	16631681	TTTACCAGTAGTCGGTAAACG		59	16631731	16631749	TTCCTATTAAACCGCTCGG		59	NA	
Drosophila melanogaster	50	mun	FBgn0053518	FBtr0091463	2	1	1	106	3R	16215762	16215780	ATAACAGTAATCCGGCCAG		59	16213337	16215693	CAACTTTAATCTGCACTCGC		59	NA	
Drosophila melanogaster	50	CG10887	FBgn0038773	FBtr0083864	3	1	1	129	3R	15940786	15940860	CATTCAATAGGAGGAGCCC		59	15940950	15940971	GATTCAGGAACACTATTTGCTG		59	NA	
Drosophila melanogaster	50	CG4462	FBgn0038752	FBtr0083850	2	1	1	178	3R	15748417	15748435	TGGTACCGAACACTATTGC		59	15748027	15748102	ATCAGCATCCATTGAGTCC		59	NA	
Drosophila melanogaster	50	CG6231	FBgn0038720	FBtr0083810,FBtr0083809,FBtr0083807,FBtr0083808	1	4	4	80	3R	15444855	15444873	CGACTTTAATCGCTACCAG		57	15444732	15444811	TGCGTAAAGTAATGCATCG		58	NA	
Drosophila melanogaster	50	CG5316	FBgn0038704	FBtr0083760,FBtr0083758	2	2	3	80	3R	15230458	15230570	GGGATATAACTCAGCTAACCG		59	15230610	15230630	GCTTCTCGATGATTTGATTCG		59	NA	
Drosophila melanogaster	50	CG6026	FBgn0038676	FBtr0083715	2	1	1	60	3R	14867672	14867691	CCATGCACAACCATTAAGTC		59	14867714	14867732	CTTGGGAAAGACAACAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12333	FBgn0038617	FBtr0083655	1	1	1	130	3R	14227280	14227355	AAGAAGGGCCATTCTTCAG		59	14227168	14227186	ACCACGACTGAAAGATGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31235	FBgn0051235	FBtr0083588	3	1	1	97	3R	14143407	14143425	TTCATGAAGAATGCCTACG		57	14143196	14143347	TCGCAATCATTGAAGTACTC		57	NA	
Drosophila melanogaster	50	CG14322	FBgn0038532	FBtr0083476	3	1	1	151	3R	13490222	13490240	ACGTGTTTCACCTAGTCAC		59	13490355	13490435	CTCCAGATTCAAGAGCGAG		59	NA	
Drosophila melanogaster	50	CG14332	FBgn0038509	FBtr0083446	3	1	1	61	3R	13247828	13247846	GATCGTATTTGTCGTCGGT		59	13247785	13247803	AATAGCTCCAGACTGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333	1	6	8	90	3R	12118541	12119712	CTATTAGGATCACATGCCGA		59	12119765	12119783	AAACCATGGCATTGTAACG		59	NA	
Drosophila melanogaster	50	Sra-1	FBgn0038320	FBtr0083085	3	1	1	88	3R	11161917	11161935	CAGAATAACACTGCACGTC		58	11161986	11162066	TTCGAATGAAACGATTCGTG		59	NA	
Drosophila melanogaster	50	Su(var)3-9	FBgn0003600	FBtr0083131,FBtr0083130	2	2	3	91	3R	11085095	11085179	CATTGCTGGCAATGAATCC		59	11085022	11085043	GCAAGATCAGAATCTGTTTCAG		59	NA	
Drosophila melanogaster	50	CG34316	FBgn0085345	FBtr0112514,FBtr0112515	3	2	2	83	3R	11056745	11056763	CAAATCCTTATACACCGCC		58	11056810	11056894	TTTGTAATGGAGGTTTCGG		57	NA	Nonspecific
Drosophila melanogaster	50	CG6687	FBgn0038299	FBtr0083140	3	1	1	140	3R	11032952	11032970	TTAACCGTGTCATATCCCG		59	11032768	11032849	CCATTAAGCTGAGGATAGGG		59	NA	
Drosophila melanogaster	50	CG7530	FBgn0038256	FBtr0083020,FBtr0083021,FBtr0083019	1	3	3	103	3R	10551833	10551851	TTCAACCCGTACATTCGTC		59	10551639	10551767	CTCCAGATGTTGATCGTCTC		59	NA	
Drosophila melanogaster	50	CG9920	FBgn0038200	FBtr0082917	1	1	1	73	3R	9923385	9923403	ATACGGTGGAACTAAGGTC		58	9923330	9923348	TAGCAAGGATATCGCTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9286	FBgn0038183	FBtr0082830	3	1	1	188	3R	9607072	9607149	CGGATTTGATCATAGCCCA		59	9607298	9607319	CCAGTATGTAGGTCCTTAACTG		59	NA	
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082803,FBtr0082807	2	2	8	81	3R	9490587	9490607	CTAGGCAGACAATCTAAACTC		57	9490649	9491186	ATCCTTGAGATCTTAATGCG		57	NA	InUTR
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082802,FBtr0082803,FBtr0082807,FBtr0082801,FBtr0100261,FBtr0082805,FBtr0082804	3	7	8	147	3R	9487574	9487894	GCTTTGTGGAATTCGAAGAC		59	9488069	9488087	CCATATCGATCGTCGTAGC		59	NA	
Drosophila melanogaster	50	CG14370	FBgn0038158	FBtr0082788	3	1	1	61	3R	9413914	9413932	CAAGCATCTGGACAATGGA		59	9413956	9413975	CAATTCTTAGCGGAAAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14375	FBgn0038147	FBtr0082762	2	1	1	60	3R	9215472	9215779	GAAATCATGGTTTAACCGAC		57	9215431	9215449	GGGATAATCAAGTTCACCC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG14380	FBgn0038124	FBtr0082733	2	1	1	82	3R	9014572	9014590	GAATTATTCCAGGACCCGT		59	9014700	9014718	TAGAAGCGCAGTTAAACAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8508	FBgn0038123	FBtr0082783	3	1	1	61	3R	9011794	9011813	TACTGGAGAAACCTACATGC		59	9011752	9011770	TTTCGGTATCGTCAATGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pp1-87B	FBgn0004103	FBtr0082595	3	1	1	61	3R	8251194	8251212	TACTACGATCTGTTGCGTC		59	8251151	8251169	AACAGGTAATTCGATTCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10013	FBgn0038012	FBtr0082567	2	1	1	60	3R	8150289	8150310	CTGATATAGACTTACCCATGGA		58	8150331	8150349	ACATTCATGTCCACATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	svp	FBgn0003651	FBtr0082564,FBtr0082562	2	2	3	123	3R	8126351	8126617	CCTCACAAGTCATTGAGCA		59	8126704	8126722	CACATCGAAGGCAGATAGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12256	FBgn0038002	FBtr0082621	1	1	1	132	3R	8051368	8051386	ATTCCAAGTGCAAGGAGAC		59	8051192	8051212	TGTTTATAGGACTCACCACTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18347	FBgn0037969	FBtr0082484	1	1	1	110	3R	7796689	7796766	TGTATCACTAAGACACTGAAGC		59	7796837	7796855	ATAGTAGACCGTTTGAGCG		59	NA	
Drosophila melanogaster	50	CG12213	FBgn0037968	FBtr0113223,FBtr0082510	2	2	3	80	3R	7791205	7791283	GGATGAAGATCAAGATGAGGA		58	7791145	7791166	ACTTAGTGTCTAATAACCTCGC		59	NA	InUTR
Drosophila melanogaster	50	Taf12	FBgn0011290	FBtr0082440,FBtr0082441	3	2	3	280	3R	7504916	7504934	TGTCGGATCTCTTTACCAC		58	7504583	7504672	TTTGGTAAGCATGGGAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Tctp	FBgn0037874	FBtr0082344	1	1	1	60	3R	7036109	7036130	ATCTACAAGGATATCATCACCG		59	7036151	7036169	CCAGCTTCATCTTGTAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ugt86Da	FBgn0040259	FBtr0082338	3	1	1	77	3R	6984037	6984055	CTATTAGCTGGAACACCGA		58	6984165	6984183	CACTAAACTTCAGCAGTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	pont	FBgn0040078	FBtr0082226	3	1	1	124	3R	6089059	6089077	CCTACCTACACAAGTCCCT		59	6089226	6089244	CAGATCTAGCGGAATTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210	3	5	8	82	3R	5834567	5835034	TCTACGAAGGTTCAAACCG		59	5834503	5834521	GAGTCGGTGGATATCTCAG		58	NA	
Drosophila melanogaster	50	CG12807	FBgn0037772	FBtr0082171	3	1	1	192	3R	5825469	5825561	AACGACTTGCAGAATATGG		57	5825923	5825941	TCACAGAGATCTGAATGGG		58	NA	
Drosophila melanogaster	50	dmt	FBgn0016792	FBtr0082086	1	1	1	153	3R	5539290	5539593	CATTTGCCGATAAGCAACC		59	5539710	5539728	TTCTTCTCCGGAGAATCCA		59	NA	
Drosophila melanogaster	50	CG9396	FBgn0037714	FBtr0082111	3	1	1	85	3R	5397005	5397023	AATGGACTTATCAAGGCCT		58	5396880	5396956	AATATGGTCTTGGGTCCTG		58	NA	
Drosophila melanogaster	50	CG16790	FBgn0037713	FBtr0082112	1	1	1	90	3R	5395399	5395417	GATGAATTCTCCCGATCCT		58	5395266	5395284	CCTCATTCGTGTAGATCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Vps16A	FBgn0037674	FBtr0081979	2	1	1	80	3R	5094882	5094901	GATACAGAGTTGATCACCCA		58	5094943	5095030	GTCCCTAATAGTCATGTGCA		59	NA	
Drosophila melanogaster	50	CG11982	FBgn0037653	FBtr0081965	1	1	1	60	3R	4833149	4833167	CAATGTGCAGATCAATGCC		59	4833191	4833209	GTCCCAGCATATAGAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33191	FBgn0053191	FBtr0081941	2	1	1	60	3R	4604667	4604688	CACTTGATAATCTATGCTCCAG		58	4604628	4604646	CATCGGATTCATCCGACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pif1A	FBgn0027540	FBtr0091714,FBtr0091715	3	2	2	98	3R	4612636	4616239	GATGTCAAGATAACCCAACTC		58	4612558	4612576	ACTGCTCTTCATTGTTGTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG34135	FBgn0083971	FBtr0110905,FBtr0110904	2	2	2	60	3R	4576505	4576525	CAGGAGTGATGTATTTACTGG		57	4576399	4576417	AAGTGAATGATCATGAGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11035	FBgn0037544	FBtr0081816	1	1	1	60	3R	3858441	3858459	CAGGAACCAAGGAAGTGAG		59	3858399	3858419	CTCATAAGCCTGATTGATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14607	FBgn0037488	FBtr0081575	1	1	1	60	3R	3069117	3069138	GCCTATATCTATGATTACTCCG		57	3069158	3069177	TGTTGGTATTCGATGTTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MAGE	FBgn0037481	FBtr0081606	2	1	1	60	3R	2980371	2980390	TCGAAACTGTACGTTATGCT		59	2980330	2980348	AGTAGCCATGTTCTTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31248	FBgn0051248	FBtr0081564	1	1	1	109	3R	2956077	2956149	AAATTCAGTATGCACCACC		57	2956221	2956240	CACTTCGATCATAAAGTCCA		57	NA	
Drosophila melanogaster	50	Taf1	FBgn0010355	FBtr0081685	2	1	3	132	3R	2480358	2480376	GATTGACCTAGAGGCTCAC		59	2480796	2480941	CATGGATTCATCTTGCTGC		59	NA	
Drosophila melanogaster	50	Osi20	FBgn0037430	FBtr0081708	1	1	1	60	3R	2166503	2166521	GATTCTGTCCAAGATTGCC		58	2166543	2166563	CTGGATAAGGTTGTAGATCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or83a	FBgn0037322	FBtr0078797	2	1	1	124	3R	1224187	1224205	CTGCATATGGTGCTTTGTG		59	1224028	1224099	TGCAATTGATTCAGTTCCG		58	NA	
Drosophila melanogaster	50	CG1172	FBgn0037321	FBtr0078792	2	1	1	157	3R	1220304	1220322	GACGAGTTCTGGGATACTG		59	1220443	1221256	TCTGTAAGGTAGCCATTGG		58	NA	
Drosophila melanogaster	50	CG12000	FBgn0037314	FBtr0078805,FBtr0078806	1	2	2	68	3R	1183098	1183116	CAAGGACAGGGACTTTACC		59	1182977	1182995	TAGTAAAGCACCTCCATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2604	FBgn0037298	FBtr0078829,FBtr0078828,FBtr0078830	3	3	3	60	3R	1047615	1047634	CTAAGACCGGACTAATTAGC		57	1047574	1047593	AGAATCTCAAACTTGATGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1116	FBgn0037297	FBtr0078775,FBtr0078774,FBtr0078776	3	3	3	211	3R	1045991	1046009	CAAGATCACCATTGCTACG		58	1046184	1046267	CGGTTACGTTCTTAAGGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	cno	FBgn0000340	FBtr0078832	1	1	2	110	3R	1009579	1009597	TCACCAGGAACTCTTTCTG		58	1008596	1009505	GACGCTCGATATCTAGCAC		59	NA	
Drosophila melanogaster	50	atms	FBgn0010750	FBtr0078868	1	1	1	213	3R	602416	602434	TACTTCTTCGTGATGCGTC		59	602670	602688	CTTCTTCCACGATCTCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9769	FBgn0037270	FBtr0078892	3	1	1	60	3R	539109	539127	GCTGCTAGACCTTATCCAC		59	539067	539085	GAACATCTGAGTGAACTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33927	FBgn0053927	FBtr0091931	1	1	1	268	3R	516124	516142	TCAGTGTCGTTTAAAGGCA		59	515816	515834	CCATTATATGCACTGGACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG41465	FBgn0084026	FBtr0111215	2	1	1	60	3R	287850	287871	TTCTTATGCATTATCTCGAGGG		59	287891	287910	GTTGACTCCCAATATACCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1090	FBgn0037238	FBtr0078912	3	1	2	111	3R	189420	189439	GCCTTATCCTCCACATACTG		59	189513	189951	GATAGCTTTAGCTCCTCGC		59	NA	
Drosophila melanogaster	50	CG41462	FBgn0084023	FBtr0111218	1	1	1	129	3R	179817	179835	GAGGCAAAGTGAACAATGC		59	179925	179946	CTTTCTATTCAGAAATCCAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113337	2	1	15	249	3R	117722	117740	AAACGAAGATAGAAGGCCC		59	121000	121299	TGATGTTGTACTTATCGCG		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Arf79F	FBgn0010348	FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572	3	6	7	86	3L	22862823	22862842	ATTAGCTTTACAGTGTGGGA		58	22862563	22862777	GATAAGACCTTGTGTATTCTGG		58	NA	
Drosophila melanogaster	50	CG11449	FBgn0037162	FBtr0078503	1	1	1	74	3L	22448587	22448607	ACGAGCTGAAGTATCTAAAGG		59	22448643	22448661	CTATGGCTGCTTCCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	olf413	FBgn0037153	FBtr0089664	2	1	1	86	3L	22222253	22222365	TCAAATTACGCCAGATACGA		59	22222414	22222432	GTCGAAAGTCCTGATAGGC		59	NA	
Drosophila melanogaster	50	CG33292	FBgn0053292	FBtr0078428	1	1	1	60	3L	21652116	21652134	GAAATCCGAGTGTGATTGC		59	21652158	21652176	ATCATCCGCATTACCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7634	FBgn0037101	FBtr0078371	3	1	1	123	3L	21560464	21560547	CGAAAGTCTATTGAAGAGGC		58	21560633	21560651	GATCTAGAGCTTCACTGGT		58	NA	
Drosophila melanogaster	50	Aef1	FBgn0005694	FBtr0078349	2	1	3	107	3L	21428135	21428153	CAACAACATCAGAGAAGCG		59	21428224	21428304	GGATTAGGTAGTCTCGGTG		58	NA	InUTR
Drosophila melanogaster	50	CG33054	FBgn0053054	FBtr0078317,FBtr0078316	2	2	2	60	3L	21190926	21190944	CTACCTAGTAACCAAGCCT		57	21190884	21190903	AGATGCTTGTACAGATTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32432	FBgn0052432	FBtr0078268	1	1	1	80	3L	20840211	20840289	GTCAGAATTGAGATCTTTGAGC		59	20840152	20840170	TTGGTTAGAGGAGTTGCAC		59	NA	
Drosophila melanogaster	50	CG13255	FBgn0040636	FBtr0078263	3	1	1	101	3L	20831558	20831576	TCATACTGGTCAATGTGGT		58	20831641	20831659	CCATGATGGAGGTCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS26	FBgn0036774	FBtr0075121	1	1	1	86	3L	18100363	18100384	CCAAGAACTATATCACTAGGGA		58	18100431	18100449	TATCGATGGCGAAATTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Prestin	FBgn0036770	FBtr0075153	1	1	1	80	3L	17893991	17894068	GAATTGTAAACCTCCTAATGGC		59	17893932	17893950	TGAATCCATTCACCAGAGG		58	NA	
Drosophila melanogaster	50	CG5535	FBgn0036764	FBtr0075158,FBtr0075159	2	2	2	255	3L	17847364	17847452	GAATACGCAATTGGCTCTG		59	17847127	17847145	TAATGACGAACAACACGAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	cln3	FBgn0036756	FBtr0075167	1	1	1	89	3L	17803370	17803448	CGCGATACAATAAGAATGTG		57	17803300	17803318	ATCTCAAGCTAGCATAGCT		57	NA	
Drosophila melanogaster	50	CG7542	FBgn0036738	FBtr0075181	3	1	1	62	3L	17543191	17543209	AAACATCGGTGATGAGTCC		59	17543234	17543253	ATAATACCCGACTTCTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	frc	FBgn0042641	FBtr0075228	1	1	1	60	3L	17425341	17425360	GCCTAATGTACTACAACTCG		57	17425300	17425318	GTAACATAGTTGAGGGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cad74A	FBgn0036715	FBtr0075240,FBtr0075239	2	2	2	95	3L	17363253	17363333	CGAATGTCACAGAGAATGC		58	17363176	17363194	AAGTAATGGTTCCGGATGG		59	NA	
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	3	8	8	172	3L	16956749	16956767	ACGTCAAGTACAAGGACTG		59	16956901	16956979	CAATAGACCCTTGTGAATCAC		58	NA	
Drosophila melanogaster	50	CG13030	FBgn0036669	FBtr0075334	2	1	1	60	3L	16853229	16853247	CCTTGGAGGCCTATAATCG		59	16853270	16853289	TTCTCACGGATTGATCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4877	FBgn0036624	FBtr0075386,FBtr0075387	3	2	2	84	3L	16382650	16382670	CATCTGCTAGATAGCAATCCA		59	16382716	16382792	CCATGTCCTGGTTACTGTC		59	NA	
Drosophila melanogaster	50	CG4962	FBgn0036597	FBtr0075471	3	1	1	85	3L	16288426	16288444	GATATGGACTGGGATACGG		58	16288359	16288377	GTAGCTCTTGATGATCGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4950	FBgn0036587	FBtr0075479	1	1	1	60	3L	16259967	16259986	CACAACTTCAGAAATTGGGA		58	16259926	16259946	AGATGATGTAGATAGGAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED10	FBgn0036581	FBtr0075458	1	1	1	60	3L	16225538	16225558	GTCTATGTGCCATTTGAAGTG		59	16225580	16225598	ACAGCTGAGGATTCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5151	FBgn0036576	FBtr0075488,FBtr0075487	2	2	2	125	3L	16134523	16134541	ACATTACCAGTACCAGCTG		58	16134354	16134434	ATCTCCGATTGCTGATAGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Notum	FBgn0044028	FBtr0075436,FBtr0075435	3	2	2	84	3L	16023316	16023335	GGATACCGACTATATCCCAC		58	16023445	16023464	CATTATCCACTCGCATTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7739	FBgn0036509	FBtr0075596	3	1	1	60	3L	15555023	15555042	TTTACTTGCGAACCATTACG		58	15554982	15555000	AGATCAGGATACCCATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13472	FBgn0036450	FBtr0075691	1	1	1	84	3L	14782306	14782431	ATGGAAGGTATTATGAGGCTG		59	14782477	14782495	TCCTCATGGTTTCCATAGC		59	NA	
Drosophila melanogaster	50	Syx13	FBgn0036341	FBtr0075886	3	1	1	68	3L	13038636	13038655	ATGTCAACCAGATCATGACC		59	13038686	13039325	CGATGAAATCCATCTGCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17667	FBgn0036312	FBtr0075926,FBtr0075925	3	2	2	114	3L	12787408	12787491	ACAAGGATGTCTTTCAGGG		59	12787569	12787587	TCGAGTAGCGTTAGTTCCT		59	NA	
Drosophila melanogaster	50	eap	FBgn0052099	FBtr0076000	1	1	1	60	3L	12143241	12143260	CAAGTTGAGGAACTTCTCGT		59	12143283	12143301	AGTAGCTGATCACTTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32095	FBgn0052095	FBtr0076077	2	1	1	60	3L	11817606	11817624	GACATTAGCTTCCATACGG		57	11817564	11817583	GTAGATTGTGCAATACTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tim13	FBgn0036204	FBtr0076089	2	1	1	149	3L	11767390	11767408	CTTCAAGAAGTGCATCCAG		58	11767259	11767277	ATGGTCCTGTACTGTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6216	FBgn0036139	FBtr0076220	1	1	2	175	3L	11138485	11138503	AGTCCTAAGACCACGAGAG		59	11137496	11138347	AAAGTATCAACTGGGTCTGG		59	NA	
Drosophila melanogaster	50	CG6310	FBgn0036121	FBtr0076239	2	1	1	80	3L	11062394	11062475	CTATTGCCTACAATCACTGAG		58	11062334	11062353	TGATACTGGATGTTCTCCTG		58	NA	
Drosophila melanogaster	50	Fad2	FBgn0029172	FBtr0076196	1	1	1	60	3L	11017528	11017547	AATTCATGGCCTATTTGGGT		59	11017569	11017588	TTGACCAAATCCAGTGAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr67Fa1	FBgn0036108	FBtr0076191	3	1	1	114	3L	10883620	10883638	CATCCTTAGGAGCTTGGAG		59	10883716	10883734	ATCACATAAGACTTCCGCT		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG32062	FBgn0052062	FBtr0076290,FBtr0076289	1	2	5	163	3L	10564192	10564210	ACGAGTACAATGGAACCAG		59	10564337	10566558	TACTGTGGATATGCTGAGC		58	NA	
Drosophila melanogaster	50	Dhh1	FBgn0011802	FBtr0076292	1	1	1	60	3L	10455329	10455348	CAGTTTGTCTACGAATTGCC		59	10455288	10455306	GCAGTTTAAGACGCATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32060	FBgn0052060	FBtr0076283	1	1	1	106	3L	10417909	10418210	GTTAATGAACGAGGATCAGG		58	10418279	10418297	GCATTTAGCAATTGCAGAC		57	NA	
Drosophila melanogaster	50	CG32053	FBgn0052053	FBtr0076315	3	1	1	172	3L	10084474	10084627	CATTAATGGAGTTCTGTTCGC		59	10084322	10084340	CCTCTTGTAGAACACCGAC		59	NA	
Drosophila melanogaster	50	dpr6	FBgn0040823	FBtr0076353	3	1	1	200	3L	10029897	10029915	ATGAGTGCCAGATATCGAC		58	10030563	10033968	CATAATTAATGACCTCCTCGTG		58	NA	
Drosophila melanogaster	50	CG6674	FBgn0036063	FBtr0076354	2	1	1	95	3L	9964532	9964550	GATCGAGTTCAAGAGGACC		59	9964455	9964473	CTTAACTGCGGCTTATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14164	FBgn0036057	FBtr0113157,FBtr0076359	1	2	2	82	3L	9887379	9887459	GATTGATTTGCCCATGATCC		59	9887316	9887334	CATTGGGATGATAGCTCCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG34382	FBgn0085411	FBtr0112620	1	1	1	188	3L	9873510	9873528	GTCAGGAAACCATCTACGG		59	9875408	9875426	CTTGCAGATACACGTAGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323	1	4	11	113	3L	9774996	9775719	ACCTGGGTAATTTGTCTGG		59	9775795	9775814	ACATATCGTCCTTCATGTCG		59	NA	
Drosophila melanogaster	50	vsg	FBgn0045823	FBtr0076398,FBtr0076400,FBtr0076399,FBtr0076401	3	4	4	78	3L	9709210	9709228	ATGGATCCTCGTTCATTGG		59	9709270	9709288	TTGTAGAACTTGTAGGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsp27	FBgn0001226	FBtr0076454	3	1	1	63	3L	9377244	9377262	TTGTCTAGACAGGGTTGTG		58	9377288	9377307	GCAGCAGTGGTATAATTGAC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG5026	FBgn0035945	FBtr0076516,FBtr0076515	1	2	2	80	3L	8963987	8964060	TGTGGAGTGATCTCTATTTGC		59	8964101	8964120	TGACAAGTTCCTGAATTTGC		58	NA	
Drosophila melanogaster	50	mRpL12	FBgn0011787	FBtr0076511	3	1	1	82	3L	8950441	8950459	AGGTGAAGAACCTACTCGA		59	8950505	8950523	GTCCTCCTTAACGATGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	h	FBgn0001168	FBtr0076569,FBtr0100153	1	2	2	91	3L	8670523	8670543	CTCAATGAACTCAAGACTCTG		58	8670733	8670751	GTCTTCTCCAGAATGTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17352	FBgn0035880	FBtr0076675,FBtr0076676,FBtr0100664,FBtr0076674	1	4	5	102	3L	8348275	8348293	CTTCGTATCCTCCAAGCAG		59	8347658	8347677	CATGTTCATCATGGTGATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	pbl	FBgn0003041	FBtr0112817,FBtr0076772,FBtr0076773,FBtr0076774,FBtr0076771	3	5	5	80	3L	7891868	7891886	AGACTGGTTCTGGTATACC		57	7891737	7891826	GTGATGCTATCCAAATAGTCG		58	NA	
Drosophila melanogaster	50	Srp19	FBgn0015298	FBtr0076879	2	1	1	69	3L	7340782	7340802	GACAATCCCAGCTATATTGAG		57	7340733	7340751	TGTTCTCCATGAGGAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lark	FBgn0011640	FBtr0076842,FBtr0076843,FBtr0076845,FBtr0076841,FBtr0076844	1	5	5	99	3L	7334147	7334165	TACGACACTATGTTCAGCC		59	7334466	7334484	TAAAGTCCTCGTAACCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8616	FBgn0035752	FBtr0076834	3	1	1	166	3L	7233026	7233044	AAACTTCACAGAACTCGTG		57	7233229	7233250	TGCTCCAGTAGTTAATAATCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32387	FBgn0052387	FBtr0076919	3	1	3	167	3L	7157973	7158039	TTTGCTACAGACACATGCT		59	7157608	7157843	AGGTTTCCGGAATCTTATCG		59	NA	
Drosophila melanogaster	50	CG10107	FBgn0035713	FBtr0076952,FBtr0076950	1	2	3	85	3L	6741017	6741035	AAATCTCCACGAACTTTCC		57	6740081	6740970	GGGAGAAATCTTTGTACAAGG		58	NA	
Drosophila melanogaster	50	CG33523	FBgn0053523	FBtr0091478,FBtr0091476,FBtr0091477,FBtr0091475	1	4	4	284	3L	5921919	5921937	ACAGCAAGGATAAGTTCCT		58	5922249	5922267	TCACGTATTGCAGGTTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10486	FBgn0035647	FBtr0114644	3	1	1	88	3L	5898840	5898859	GATACCTGCTTTACGATGGT		59	5898690	5898708	AAGGCCAGTGATAGATTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	DopEcR	FBgn0035538	FBtr0100185,FBtr0100186,FBtr0073337	2	3	3	60	3L	4379449	4379467	AAACTGAGCAATGTCAAGG		58	4371891	4379425	CTAATTGTGCGCATCTGAG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	wit	FBgn0024179	FBtr0073279	2	1	1	81	3L	4067285	4067305	AGTACTATGTGAACGAGAGGA		59	4067161	4067242	TCATCGTAGCCGAAATAGC		59	NA	
Drosophila melanogaster	50	CG32264	FBgn0052264	FBtr0113431	3	1	5	142	3L	3754053	3767147	CAACAATAACGGAAACTGGTC		59	3723843	3723861	GTTGTGCATCAGTCTTGTC		59	NA	
Drosophila melanogaster	50	CG32270	FBgn0052270	FBtr0100421	1	1	1	60	3L	3208707	3208725	GCCTTAATGATGGCAATCC		58	3208665	3208683	TCACTCAGATAGGTCACCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pxn	FBgn0011828	FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951	3	4	5	114	3L	2607772	2607790	TTCGTCAAGAATGTGACCA		59	2604263	2607695	CCAAATCCACGTTGTTTCTG		59	NA	
Drosophila melanogaster	50	Pxn	FBgn0011828	FBtr0072950,FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951	2	5	5	148	3L	2611835	2611855	CTGAACAATAATCGGCTAAGC		59	2611549	2611649	TACATGATCAGGCGATTCAG		59	NA	
Drosophila melanogaster	50	msn	FBgn0010909	FBtr0072957,FBtr0072956	1	2	5	182	3L	2558381	2560125	CAGTGAGGAGTATCAAGCG		59	2558217	2558235	GAATTCGAGGACGAAGAGG		59	NA	
Drosophila melanogaster	50	CG33232	FBgn0035347	FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920	2	4	4	87	3L	2495884	2495902	ACATTAGCTCCGAGTACAC		58	2495951	2496030	GCATTATGACCATATGACTCC		58	NA	
Drosophila melanogaster	50	CG32298	FBgn0052298	FBtr0072897	1	1	1	60	3L	2390645	2390663	CGAGCTAGAGTTTGTTGAC		58	2390603	2390623	TATCTTCTTCGATAGACCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32308	FBgn0052308	FBtr0072851	1	1	2	81	3L	2023324	2025976	GGCAAATTTCTTCAGACTGG		59	2023262	2023280	CAAATTGCCTCAGTTGCTC		59	NA	
Drosophila melanogaster	50	HBS1	FBgn0042712	FBtr0072866	3	1	1	60	3L	1864618	1864636	AGATCCTCAACGAAGAGAC		58	1864576	1864595	GGCGCTTTCATCTTATTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bgb	FBgn0013753	FBtr0072758	1	1	1	60	3L	1640393	1640411	GTTCCGTGGATGGATAGAC		59	1640435	1640453	CTCGTCATACTCCAGACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12090	FBgn0035227	FBtr0072703	1	1	3	124	3L	1528072	1529120	GAAAGATCATCATAGGCGTC		58	1527967	1527987	CAGAGTGTAATCCGATATCAC		57	NA	
Drosophila melanogaster	50	stet	FBgn0020248	FBtr0072713,FBtr0072712	2	2	2	202	3L	1476518	1476595	CATTCTGGTCTTCGTTTCC		58	1476334	1476352	TCTGCTCAAAGCTCTTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9153	FBgn0035207	FBtr0072671,FBtr0072670	1	2	2	83	3L	1317542	1317560	AATGAGGATTACGACTGGC		59	1317604	1317680	CCATTTGATTGTATCATCGACC		59	NA	
Drosophila melanogaster	50	CG9153	FBgn0035207	FBtr0072671,FBtr0072670	2	2	2	88	3L	1317537	1317556	TGGGAAATGAGGATTACGAC		59	1317604	1317680	CCATTTGATTGTATCATCGACC		59	NA	
Drosophila melanogaster	50	scf	FBgn0025682	FBtr0089942,FBtr0089940,FBtr0089941	1	3	3	60	3L	1299627	1299647	TATTTGAACGAGGAGGAAGTG		59	1299669	1299687	CCTCCGAATGATCGAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32333	FBgn0052333	FBtr0100256,FBtr0072662	3	2	2	254	3L	1285102	1287941	ATCTGCTAGTTGACAGTCG		59	1288159	1288177	GATGGAAGTAGTCGAACAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	bab1	FBgn0004870	FBtr0072642	2	1	2	138	3L	1099101	1099119	GATCCGAGAGGAAGAAAGG		59	1040162	1040180	ATTCTGGTTGGTGTTCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13887	FBgn0035165	FBtr0072583,FBtr0072584	3	2	2	61	3L	838421	838440	TTCTACATCTCTGGATTCGC		59	838464	838482	ATCAAGTTTACCAGTCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	emc	FBgn0000575	FBtr0072578	2	1	1	101	3L	749780	749801	GAAGATGTATCTGTCCAAACTG		58	749863	749881	CAGATGTAGTCGATGACGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3279	FBgn0035156	FBtr0072607	3	1	1	60	3L	692360	692380	AGGATGTGTCCATAAGTACAG		58	692320	692339	TCAATCCTTTCCGAGTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rev1	FBgn0035150	FBtr0072557	1	1	1	98	3L	657500	657520	GTGGATCTTATTCTCAAGCAG		58	657580	657662	CATATTGATGATCCGGCAC		58	NA	
Drosophila melanogaster	50	trh	FBgn0003749	FBtr0112839,FBtr0072567,FBtr0110875	3	3	3	80	3L	368937	369016	AACTATGTGATCAGCAACC		57	368875	368893	CTTAATGCTATCCGGACTG		57	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-1347b	FBgn0083053	FBtr0113514	3	1	1	75	2R	14030550	14030570	CGACTAAGATTCATAGTTGCC		58	14030607	14030625	GTTATGCAGATGGTATGCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3760	FBgn0022343	FBtr0072391,FBtr0072392	1	2	2	123	2R	20826705	20826723	TCCAAGACCTACGTTTCAC		59	20826863	20826881	ACTCGGTATTGGTGATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13592	FBgn0035019	FBtr0072345	2	1	1	60	2R	20418321	20418339	CTCTACAGCTACCTACCGT		59	20418279	20418298	ACTCGGACACATTTGATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11406	FBgn0034990	FBtr0100169,FBtr0072276	1	2	2	153	2R	20090339	20093348	TATCCATTGGATCGTAGCA		57	20090044	20090062	CATATCGCAGCGTATTCAG		58	NA	
Drosophila melanogaster	50	Sox14	FBgn0005612	FBtr0072158,FBtr0072157	1	2	2	60	2R	19872011	19872029	AGACAACATTGTGAACGAC		58	19872050	19872071	CACATATGGAGGTATTTGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Alas	FBgn0020764	FBtr0072151	1	1	1	60	2R	19853862	19853880	TCAAATCTCAAACGTGCTG		58	19853904	19853922	TGGGTAGTTAATCGACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30416	FBgn0050416	FBtr0072042	2	1	1	60	2R	19209563	19209584	GACAGATCTCGATGTATATGAC		57	19209524	19209542	ATGCCCTTCATTCATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30412	FBgn0050412	FBtr0072044,FBtr0072043	1	2	2	72	2R	19206418	19206436	TTTACGGACTTCGTAAGGC		59	19206364	19206382	TCTGCTTGAAACCCATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yip3	FBgn0040063	FBtr0072050,FBtr0072051	2	2	2	117	2R	19132235	19132253	GTCTTAAGAGTACCAACGC		57	19132086	19132104	ACTATGTTCCGATCGATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3162	FBgn0034834	FBtr0072052	1	1	1	60	2R	19098280	19098301	CCCAATAAGATCTACGTAGGTG		59	19098241	19098259	GTTCCTTGACCTGATCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED23	FBgn0034795	FBtr0071903	1	1	1	80	2R	18779968	18779988	CAAATGTCCACCAGATATTGG		59	18780027	18780106	GATATGTTATAGGTCGATCGTG		58	NA	
Drosophila melanogaster	50	stl	FBgn0086408	FBtr0113110,FBtr0071885	2	2	2	81	2R	18703125	18703200	ACCATCACATTCAGATATCTCC		59	18703241	18703260	TTTGCTACTCAGTTCGTCTG		59	NA	
Drosophila melanogaster	50	jbug	FBgn0028371	FBtr0071917	3	1	3	92	2R	18605691	18605709	CTGACCATCAAGTACGGAG		59	18605546	18605635	ATAAACGCGGACCTTACTG		59	NA	
Drosophila melanogaster	50	CG11291	FBgn0034713	FBtr0071773	3	1	1	60	2R	18099068	18099086	CATTGAGGGCTCTGTAGAG		59	18099110	18099128	TATGAGACATCGCTTTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9865	FBgn0034649	FBtr0071680	1	1	2	167	2R	17557180	17557260	AAGAATCACTACCAGGAGGA		59	17556976	17557050	TTATTTGTTCGACTTGCCG		58	NA	InUTR
Drosophila melanogaster	50	Egfr	FBgn0003731	FBtr0071653,FBtr0071654	2	2	2	178	2R	17443838	17443856	GTCAACGAGAATCTCAGGG		59	17444064	17444153	TCAAACTTGTAGGCATTGGA		59	NA	
Drosophila melanogaster	50	Sdc	FBgn0010415	FBtr0071707,FBtr0071706,FBtr0071705	2	3	3	143	2R	17299915	17367606	CTCAAGATCAGAAATCGGTG		58	17286794	17286815	GATCTTTCTCTAGATCTTCGTG		57	NA	
Drosophila melanogaster	50	CG30389	FBgn0050389	FBtr0071633,FBtr0071632	3	2	3	100	2R	17043171	17043192	GGTCTGTTTATTCTTCATACCC		58	17043018	17043112	GCAAACAGATACCCTTATCTG		58	NA	
Drosophila melanogaster	50	CG9945	FBgn0034527	FBtr0086225,FBtr0086226	3	2	2	238	2R	16506496	16506514	TGGATTAGTGAGCAATCCG		59	16506716	16506794	CAAAGCCATCTTGACAAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13426	FBgn0034510	FBtr0086295	3	1	1	65	2R	16400572	16400590	AGATACAGGGCCAAATGTG		59	16400470	16400488	AGACTTGCACTTCAAATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS18	FBgn0010411	FBtr0086273,FBtr0086274	2	2	2	205	2R	16151894	16151912	ATGTCGATCTTACCAAGCG		59	16152141	16152159	GATCTTCTTCAGACGCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15124	FBgn0034461	FBtr0086470	2	1	1	60	2R	15530554	15530575	CAATATGCTCGACTTTACAGAC		59	15530596	15530614	GTGCAGAGTTATGTTCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0100393	1	1	15	197	2R	15353087	15353105	TTGTGGTGACAATGATCGA		59	15353727	15353745	TTTATGTAGCACTTGTGCG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15088	FBgn0034381	FBtr0086646,FBtr0086645	3	2	2	83	2R	14616063	14616081	GATTTCTACGGTGTCTCCT		58	14615933	14616017	GCGATTAACTCCGTAAATCC		58	NA	
Drosophila melanogaster	50	GstE3	FBgn0063497	FBtr0086671	2	1	1	60	2R	14288429	14288447	CGCTCTGGATGATAATGGT		59	14288469	14288489	CACCAGGTAGGAGTTAATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18107	FBgn0034330	FBtr0086663	3	1	1	77	2R	14272156	14272174	AATCGTCACTGTCTTTGTG		57	14272278	14272297	ATAACATTTCCTGGATCGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lolal	FBgn0022238	FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778	3	4	4	123	2R	14042986	14043404	TCACAGATGTAACACTCGC		59	14042819	14042838	ATAATGATCGGATGCTTCGA		59	NA	
Drosophila melanogaster	50	CG34386	FBgn0085415	FBtr0112627	3	1	1	84	2R	13978157	13980061	AACATCAACCAAAGGTCAG		57	13980108	13980127	ATGGTAACTCATTGTTGGTG		58	NA	
Drosophila melanogaster	50	swi2	FBgn0034262	FBtr0086889	2	1	1	173	2R	13580226	13580244	ATCACTACCATAACCACCG		58	13579919	13580089	CTTTCCAGATTGGTTCAGC		58	NA	
Drosophila melanogaster	50	CG6520	FBgn0034224	FBtr0086953	1	1	1	80	2R	13363194	13363212	TTGAGCAGGATCTAAACGA		58	13363132	13363150	CATCCTCGTCACTTTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30457	FBgn0050457	FBtr0086998	3	1	1	219	2R	13048142	13048160	CTACAACTATGCTCCCGTC		59	13047941	13047960	AATGTAGGTGTTCACTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdk4	FBgn0016131	FBtr0087104,FBtr0087103,FBtr0087102	1	3	3	110	2R	12470447	12470465	ATATCGCTGAACGAGAACG		59	12470537	12471672	GCATACTTCGTACAGTTTGAC		59	NA	
Drosophila melanogaster	50	Ric	FBgn0017549	FBtr0087254	1	1	1	116	2R	11997163	11997181	GCGGGTCTATAAGATTGTC		57	11996770	11996885	TAGGAGTCCTCAATTGTGG		58	NA	
Drosophila melanogaster	50	GalNAc-T1	FBgn0034025	FBtr0087332,FBtr0087331	2	2	2	61	2R	11401756	11401906	GACTTCCATCCTTACAAATTCC		59	11401927	11401946	ATGCGGGCAGTATTAATACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	scb	FBgn0003328	FBtr0087370,FBtr0087369	1	2	2	80	2R	11144983	11145002	TGGATCATTATTGTGTCCGT		59	11145042	11145127	GAAGAAGCCAAACTTGTATAGC		59	NA	
Drosophila melanogaster	50	cpsf	FBgn0024698	FBtr0089257,FBtr0089258	1	2	2	81	2R	10389447	10389468	GTAGATCAATTGGAAATGGCAC		59	10389329	10389405	CTCCAGAACCATACACCTC		59	NA	
Drosophila melanogaster	50	cg	FBgn0000289	FBtr0112795	3	1	7	86	2R	10067360	10067378	CCTTCTTCCAGAAGAACCA		58	10067428	10067936	GTACAACAAGCTGTTGCTG		59	NA	
Drosophila melanogaster	50	CG6016	FBgn0033844	FBtr0087699,FBtr0087700	3	2	2	100	2R	9379091	9379170	TGTTCTTCCAGTGCTTCTG		59	9379009	9379028	CTCTGTCACATCAATTCTGC		58	NA	
Drosophila melanogaster	50	CG32843	FBgn0052843	FBtr0087755	3	1	1	101	2R	9160232	9160250	CTCCAGTACATCCTTACGC		59	9157017	9160167	GCACAGACCTTGAAATGAG		58	NA	
Drosophila melanogaster	50	Nmda1	FBgn0013305	FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876	2	6	6	91	2R	8765640	8765660	CGAACTTCATATTCTTGGGTC		58	8765511	8765587	CATGAGAACCTCTTTCGGA		58	NA	
Drosophila melanogaster	50	fdl	FBgn0045063	FBtr0087946,FBtr0087947	3	2	2	133	2R	8376192	8376277	GAAAGAAGCAGGTACTGGG		59	8376077	8376096	GTGATCATCGCTAGGATCAG		59	NA	
Drosophila melanogaster	50	Cyp6g1	FBgn0025454	FBtr0087992	3	1	1	82	2R	8075204	8075222	CTACGACTACACTCTCGAG		58	8075268	8075346	GATTGGTCCAGTACTTTGG		57	NA	
Drosophila melanogaster	50	CG30016	FBgn0050016	FBtr0088241	3	1	1	60	2R	6762573	6762591	GAGGACACTTTATCCAGCA		58	6762531	6762552	GTGATAGTTCTGATTCTCACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Caf1-105	FBgn0033526	FBtr0088310	3	1	1	60	2R	6354742	6354761	CTACTGCTCACTGATTACCT		58	6354701	6354722	TTCCATATCTTCATAGCAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12928	FBgn0033432	FBtr0088540	2	1	1	105	2R	5475831	5475910	GATTCGGATTTACAGCTTCG		59	5475745	5475763	GTGCATAAAGCGCATTACC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Myd88	FBgn0033402	FBtr0088598	2	1	1	80	2R	5192789	5192807	TCACAGAGGAGTTTCTTCG		58	5192654	5192747	GAGTGTGATTCTCAATCTGGA		59	NA	
Drosophila melanogaster	50	CG34141	FBgn0083977	FBtr0110980	2	1	1	128	2R	5150166	5150184	AAACAGAACAGGATGTCGA		58	5149998	5150016	GTTTGTTAAGAGCCCTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	hig	FBgn0010114	FBtr0088608,FBtr0100119,FBtr0088606,FBtr0088607	2	4	4	86	2R	5117876	5117894	TCATGGACTGCATGTATCC		59	5117583	5117829	GAGACCATCCTGTAGAATACTG		59	NA	
Drosophila melanogaster	50	alc	FBgn0033383	FBtr0088624,FBtr0088625	1	2	2	68	2R	5023270	5023288	CAAGGATACACCGCTATCG		59	5023161	5023179	AAGTGGTTAAGCATCACGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8258	FBgn0033342	FBtr0088683	1	1	1	122	2R	4793178	4793196	ACAAAGTTTGCATCGAGGA		59	4793010	4793031	CAATGTCATCCATGAAGTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	1	9	9	90	2R	4568146	4568164	AGATCAAGACCTGCTTGTG		59	4568217	4568299	ATATCACGGTAGTCCATGAC		58	NA	
Drosophila melanogaster	50	CG8693	FBgn0033294	FBtr0088748	2	1	1	93	2R	4347436	4347454	TCCGATGCCTATCATTACG		59	4347511	4347615	TGTCATGGTTACCGATCAC		59	NA	
Drosophila melanogaster	50	sut2	FBgn0028562	FBtr0088778	3	1	1	97	2R	3975942	3975960	AAGGAATAGTGAGCTGTGG		58	3976018	3976098	AGAGCGAGTAGAAGAATATAGC		58	NA	
Drosophila melanogaster	50	Optix	FBgn0025360	FBtr0088865,FBtr0088866	1	2	2	78	2R	3929501	3929519	CATGATATCAGCGGGTCTG		59	3929561	3929579	ATTTGGGATTTCGGTTTGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11107	FBgn0033160	FBtr0088966	3	1	1	80	2R	3275871	3275889	GAGATTACCTAGAGGCTGC		58	3275931	3276230	GGAACATTAGGATATCACCCT		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111093,FBtr0111073	1	2	60	109	2R	3236477	3245110	AATGCCGTTCTTTAGATGG		57	3236386	3236407	CGTCCTTAATAATGAGAGTACC		57	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111066	3	1	60	110	2R	3225835	3225853	CGATAGATTCCGTTCATGC		58	3219874	3225761	ATCTGGGAGGTACATTGAC		58	NA	
Drosophila melanogaster	50	Tsp42Ej	FBgn0033132	FBtr0089030	3	1	1	82	2R	2929211	2929230	GGTGTCGTACAAGTATTCCA		59	2929329	2929347	TGAAGGTGAAGAGGTAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34215	FBgn0085244	FBtr0112408	3	1	1	124	2R	2719085	2719103	GTGTGAGCGAATCATATGC		59	2718925	2718943	AGCAATCAGGGTAATCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3271	FBgn0033088	FBtr0086118,FBtr0086119	3	2	2	108	2R	2561684	2561772	ATATTCGCAGTGACGAGTC		59	2561842	2561862	AGATGATGGAATAGGCAAAGG		59	NA	
Drosophila melanogaster	50	CG30432	FBgn0050432	FBtr0086002	3	1	1	60	2R	2085637	2085658	GGGATTATATGTTTGGTGATCG		58	2085598	2085618	CAAAGTCATTGAGACGATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PNGase	FBgn0033050	FBtr0085971,FBtr0085972	3	2	2	168	2R	1905648	1905667	TGAAGAAGTACAGAGATGCG		59	1905853	1905933	TTATTGGTGCGCAATACAC		58	NA	
Drosophila melanogaster	50	CG14464	FBgn0033000	FBtr0111283	2	1	2	68	2R	716970	716989	AAATATTCGCTCAAACGGTC		58	717073	717091	TTATACCAGCAACCATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41485	FBgn0084045	FBtr0111242	2	1	1	61	2L	22834393	22834411	TCTTTGGTTCTGGGAAGAG		58	22834436	22834454	CAAGGATGTTATTGTGGCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40006	FBgn0058006	FBtr0111230	3	1	1	88	2L	22580846	22580921	ATAAACTTGTACCGGGTGG		59	22580776	22580796	CCATTATCAAAGGCGTTATCC		59	NA	
Drosophila melanogaster	50	CG17494	FBgn0040011	FBtr0111253,FBtr0111252	3	2	3	110	2L	22473764	22473782	AGCATGATCACTGAAGACC		59	22473855	22476862	CTTTACAATCTCGTTTCGCA		58	NA	
Drosophila melanogaster	50	clumsy	FBgn0026255	FBtr0081476,FBtr0110895	3	2	2	81	2L	21207154	21207231	CAGTTCAGACATAATTGCCT		57	21207272	21207293	GATAGATTCATTGGGTATCCAG		57	NA	
Drosophila melanogaster	50	szar	FBgn0032885	FBtr0089947,FBtr0089945,FBtr0089946	3	3	3	131	2L	20790495	20790513	AACATTACTGCCGAATCTG		57	20790327	20790400	CTTCGAGATTCTTGTTCCG		58	NA	
Drosophila melanogaster	50	CG40176	FBgn0058176	FBtr0100292	3	1	1	129	2L	20268869	20269594	TATCAGACTGCAATGCTCC		59	20268232	20268252	AATTAAACTCCACTCCGACTC		59	NA	
Drosophila melanogaster	50	CG10664	FBgn0032833	FBtr0081300,FBtr0081301	2	2	2	129	2L	19959684	19959761	CATCTTCGTGTACGATGAG		57	19959854	19959872	CTTGTTCTCGTAGTCCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13964	FBgn0032831	FBtr0081298	3	1	1	72	2L	19946092	19946110	AAAGTCTCTATGCCAAGCC		59	19946146	19946164	TACAGATTAAGGCGTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18094	FBgn0032791	FBtr0081243	2	1	1	60	2L	19490895	19490913	GGCATCTTGATTTGCACAG		59	19490936	19490955	GATGACCCGATTTAGAATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0081213	1	1	6	80	2L	19411587	19411605	TATCATCGTCGTTCCACAG		59	19410632	19411544	CTAATAGAGCATCCAGACGT		58	NA	
Drosophila melanogaster	50	brat	FBgn0010300	FBtr0081159,FBtr0081160,FBtr0081158	3	3	3	60	2L	19168285	19168303	TCTGCAGTGATGAGTACAC		59	19168327	19168345	ATTACAGTCACCTCAGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	BicD	FBgn0000183	FBtr0081002	2	1	1	88	2L	17463879	17464002	CTAGAGACCTTACAGGGTG		58	17463809	17463828	ATGTGGTACATAGACTCACG		58	NA	
Drosophila melanogaster	50	dl	FBgn0000462	FBtr0081005,FBtr0081006	3	2	3	108	2L	17438009	17438159	GAACCAAGAGATACCTCGC		59	17437919	17437937	TGTTGTGGTTGTAGTTGCT		59	NA	
Drosophila melanogaster	50	Gr36a	FBgn0045487	FBtr0080962	1	1	1	90	2L	17177703	17177778	GAGCAATCCTTTGAAAGCA		58	17177832	17177850	ATGAACTGCGAGTAATGGT		58	NA	
Drosophila melanogaster	50	trpgamma	FBgn0032593	FBtr0080946,FBtr0080945,FBtr0114470	1	3	3	80	2L	16665213	16665232	CGAGCAAGAATATTTGTCCG		59	16665101	16665173	GCTTAAGGGTCTTATCATTCAG		58	NA	
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080878,FBtr0080876	1	3	7	188	2L	16483962	16483981	TCTGCATACGGTTTATACCA		58	16481537	16483811	TTGATCGATAGGCATCTGG		58	NA	
Drosophila melanogaster	50	CG31823	FBgn0051823	FBtr0080810	2	1	1	60	2L	15899211	15899308	CCAGCGAATCAAATAGTTACC		59	15899171	15899192	AATAAATACCCACCTGTATCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18480	FBgn0028518	FBtr0080755	3	1	1	61	2L	15630510	15630529	TGATATAACCACCATTGACG		57	15630670	15630688	ACGTAAGATTAAGCAGGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	vig	FBgn0024183	FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720	3	4	4	85	2L	15065447	15066946	GATAGAACTGGTGTGAAGTC		57	15065381	15065399	ACATCATCAATAGCCTCCT		57	NA	
Drosophila melanogaster	50	vig	FBgn0024183	FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720	2	4	4	84	2L	15065452	15066950	TTCCGATAGAACTGGTGTG		58	15065386	15065404	ATCAATAGCCTCCTTGACC		58	NA	
Drosophila melanogaster	50	mol	FBgn0086711	FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015	1	5	5	162	2L	14977342	14977360	TATGAAGGCTTTGACAGGT		58	14977067	14977217	AATAAAGCAGAGAATGCCTG		58	NA	
Drosophila melanogaster	50	osp	FBgn0003016	FBtr0089865,FBtr0089866,FBtr0114465	2	3	3	107	2L	14605240	14610697	GATCACAAATCGGGTTTCC		58	14605151	14605170	TGACTCAGATTCGTTATGGT		58	NA	
Drosophila melanogaster	50	Rab14	FBgn0015791	FBtr0080627,FBtr0080628,FBtr0080626	3	3	3	82	2L	14357909	14357928	CTAATGTTTCTCGAAGCGAG		58	14358041	14358059	TTCTGGTAAATCTTGCGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32971	FBgn0052971	FBtr0080621,FBtr0114463,FBtr0114462	3	3	3	68	2L	14277702	14277722	CATGATGTCAAGGAGTATCAG		57	14277751	14277770	CGATTGTCTATCCATTTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33641	FBgn0053641	FBtr0091618	2	1	1	69	2L	13529140	13529158	CAAGTATAAGGTGCCAGAC		57	13529191	13529209	GTAGCTTCGATTATTCGCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9293	FBgn0032516	FBtr0080526,FBtr0080525	1	2	2	92	2L	13386150	13386168	CAATGAGCCCACATATTGC		59	13386014	13386032	AAGTGAAACCACTCGATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	beta Cop	FBgn0025724	FBtr0080469	2	1	1	70	2L	13380055	13380073	ATGTCTATGGACGTTGTGG		59	13380107	13380187	TTTAGATTGACCTGCTGCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9302	FBgn0032514	FBtr0080470	3	1	1	89	2L	13377041	13377059	TGGTCATGTTCTATGCACC		59	13376907	13376925	GAGGATCATCCTGTAAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6565	FBgn0032513	FBtr0080468	3	1	1	60	2L	13375355	13375374	ATATACTGGGAGATGCAGTG		58	13375397	13375415	GGCGACAATAGACGTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9928	FBgn0032472	FBtr0080496	1	1	1	60	2L	13142694	13142714	GTTCTGATGACGATAGGACTC		59	13142654	13142674	CTATCATTGCCACTGTTATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5776	FBgn0032450	FBtr0080407	1	1	1	158	2L	12703466	12703484	AGTATGGAGTACGCTTTGG		59	12703273	12703291	TATAAGCTGGACATGTCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5446	FBgn0032429	FBtr0080388	2	1	1	92	2L	12427509	12427527	AGAACTACTCCCTGAACAG		57	12427354	12427372	ACTTGTCCTGAACGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6734	FBgn0032395	FBtr0080312	3	1	1	118	2L	12015032	12015050	CTTAGATCATAGCCTGGCC		59	12014869	12014887	TTGCATAGACCAGAGATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33695	FBgn0052831	FBtr0091683	2	1	5	220	2L	11278274	11278293	AAATTTGTTGTTCCACCGTG		59	11278636	11278654	TTAGGCTGATCTTGGTCAG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG4713	FBgn0032342	FBtr0080197	1	1	1	80	2L	11109227	11109245	GAATCAGCTACAATGTGGC		58	11109288	11109365	AAGATTCATCATTGAGCAGG		57	NA	
Drosophila melanogaster	50	CG14072	FBgn0032318	FBtr0080145	2	1	1	60	2L	10937631	10937649	GGCAACCAAATTTGATTCG		58	10937670	10937691	GACCTTGAAGATTAATTCCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6443	FBgn0032290	FBtr0080110	1	1	1	68	2L	10729250	10729268	ATGGAGGAACTATTCCCAG		58	10729300	10729381	CTTTGTCTTTCTGCTCTGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG17097	FBgn0032275	FBtr0110819	1	1	1	80	2L	10649590	10649667	TTCAATACGACCCTCACTC		58	10649709	10649729	CTGTGCATAGTGATAGATCTG		57	NA	
Drosophila melanogaster	50	CG5022	FBgn0032225	FBtr0079999	1	1	1	80	2L	10345912	10345995	AATAGTTCAAGAGGAGCTGG		59	10346038	10346056	CGCAGTGCTAATTCTATGG		58	NA	
Drosophila melanogaster	50	Pten	FBgn0026379	FBtr0089900,FBtr0089904	1	2	6	82	2L	10257442	10257462	CACATGTAAACAATCCTCTCC		58	10256492	10257398	GGTATGTTGATTCACCGGA		59	NA	
Drosophila melanogaster	50	CG17855	FBgn0032124	FBtr0079830	1	1	1	84	2L	9541501	9541519	TCTAGCAGTGAATCTGACC		58	9541567	9541643	TTTGTATGAGGCTATGGGT		57	NA	
Drosophila melanogaster	50	Toll-4	FBgn0032095	FBtr0079768	1	1	1	136	2L	9084212	9084230	AATAACAAGGACGATCCAC		57	9085519	9086251	CAGTTAATGTCTCCCATCC		57	NA	
Drosophila melanogaster	50	Btk29A	FBgn0003502	FBtr0079616,FBtr0112836,FBtr0079617	2	3	6	142	2L	8298083	8298102	CTTTCAGCTACTTCGATGTG		58	8284050	8284128	TTGGAACGGATAACCATCC		59	NA	
Drosophila melanogaster	50	Slob	FBgn0024290	FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518	3	4	4	81	2L	7649009	7649028	TTGAGGACTTAGTCCTTTGC		59	7648879	7648968	GGCTTAATTGTACTGAAACAGG		59	NA	
Drosophila melanogaster	50	ninaC	FBgn0002938	FBtr0079436	3	1	2	80	2L	7383685	7383703	AGCAAAGATCCTCGTATCC		58	7383747	7383816	CCTCAGAGTTATCACCCTC		58	NA	
Drosophila melanogaster	50	wg	FBgn0004009	FBtr0079433,FBtr0079432	2	2	2	97	2L	7313109	7313127	GAATCTGCACAACAACGAG		59	7314366	7314384	TCTTCACTGTACACGATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hrb27C	FBgn0004838	FBtr0079347,FBtr0079348,FBtr0079346	2	3	3	170	2L	6924245	6924263	ACCTTCTTTAACCGCTACG		59	6924397	6924699	CTTCTTGATTTCGACCTGC		58	NA	
Drosophila melanogaster	50	Oatp26F	FBgn0051634	FBtr0079327	2	1	1	81	2L	6627591	6628524	TTTACTTGGGCATCTACTACAC		59	6627531	6627549	TAGATGAGCAGCAGTTGTC		59	NA	
Drosophila melanogaster	50	Sec61alpha	FBgn0086357	FBtr0079266	3	1	1	70	2L	6480070	6480090	GAAGTTATCAAACCGTTCTGC		59	6479049	6480038	TCCCTGAATTGGATCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9500	FBgn0031804	FBtr0079280	1	1	1	83	2L	6358073	6358150	GCTATCAGAAACAAACCCG		58	6358008	6358027	AGTACTAGCATTGGATTGGT		58	NA	
Drosophila melanogaster	50	stai	FBgn0051641	FBtr0079196,FBtr0079197	1	2	3	178	2L	6122168	6122186	GTGACATGAAGGAGAAGCT		59	6122398	6122706	GATTGTGTTATGCTCCTTTAGG		59	NA	
Drosophila melanogaster	50	CG9140	FBgn0031771	FBtr0079216	2	1	1	80	2L	6061112	6061195	CATGACTCGATTTGTTAAGGG		59	6061052	6061071	TGTCCCTCAATTTGTTTGGA		59	NA	
Drosophila melanogaster	50	qtc	FBgn0028572	FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260	3	5	7	122	2L	5068375	5068393	ACGAGTTGGAGAACATACG		59	5069211	5070106	GATAAATGGTCTTACGCGC		59	NA	
Drosophila melanogaster	50	CG8892	FBgn0031664	FBtr0079045,FBtr0079046	3	2	2	61	2L	4980357	4980375	GTACTGGTGAGGAAGTGTG		59	4980314	4980335	CAAATCGGGAAGAATATTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17612	FBgn0031597	FBtr0077464,FBtr0077463	1	2	2	60	2L	4381618	4381636	GTCTTGAAGCCCATATGTG		58	4381576	4381594	GGCTCCAACTCTGATTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31959	FBgn0051959	FBtr0077488	3	1	1	187	2L	3758661	3758742	AGATATTCGGGAACAGTACTG		59	3758891	3758909	TTTCAAATGGAGCATAGGC		58	NA	
Drosophila melanogaster	50	CG16704	FBgn0031558	FBtr0077550	2	1	1	171	2L	3692499	3692517	ACTCATCTGCTGTCTTGTG		59	3692231	3692249	ATTATTGTTTCCGTGGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15418	FBgn0031554	FBtr0077556	1	1	1	196	2L	3621633	3621651	TCTGTCACTGACGTTAGTG		58	3621455	3621473	CAACCAATAGCAACACCAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Dot	FBgn0015663	FBtr0077532	2	1	1	61	2L	3620689	3620708	ACCTAAAGAAAGCTCTTGCA		59	3620788	3620806	GACCTCAAGAGATCGTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31698	FBgn0051698	FBtr0077612	1	1	1	60	2L	3173805	3173823	GAGAGCAATACGAGTTCTG		57	3173763	3173782	CGATATTACGGCCATTAGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17257	FBgn0031495	FBtr0077651,FBtr0077652	1	2	2	152	2L	3031809	3031827	TTTGCCATCCGTTTATGGT		59	3032000	3032021	CGAGTATAAAGGCTATGTAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Prx6005	FBgn0031479	FBtr0077684	3	1	1	162	2L	2877381	2877621	CGCAACTTTGATGAAATCCT		59	2877238	2877256	TGGTTTCGATACCATCAGG		59	NA	
Drosophila melanogaster	50	Hrs	FBgn0031450	FBtr0089751,FBtr0089750	1	2	3	168	2L	2740460	2740524	CAGAAAGATGTCACTCCCA		58	2740656	2740674	TGAACATCTCGCAGTTCTC		59	NA	
Drosophila melanogaster	50	CG3862	FBgn0031286	FBtr0078038	2	1	1	61	2L	825369	825389	GTGATCATTTATCCTACAGCC		58	825328	825346	ATGTCCTCGTCTGTTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ipk2	FBgn0031267	FBtr0078074	2	1	1	74	2L	573290	573308	CTTTGCTCATGTTTACCCG		59	573234	573252	TCTATCAGGCTCTGGAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	r-cup	FBgn0031142	FBtr0077269,FBtr0077270	2	2	2	60	X	20896647	20896667	CAGAAGTACTTCGACAAATGC		59	20896607	20896626	GATAAAGAGCCTTGTGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	D2R	FBgn0053517	FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461,FBtr0070034	1	5	5	80	X	19905403	19905495	ATAGACAGATACATCGCTGTG		59	19905343	19905361	CAGTATCGTAAGGCAAACG		58	NA	
Drosophila melanogaster	50	CG14223	FBgn0031053	FBtr0074758	3	1	1	66	X	19554627	19554710	TCTGCTCTGCCTTATTTCC		59	19554579	19554598	CGGTGATATCCTTAGGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14213	FBgn0031047	FBtr0074744,FBtr0074743	3	2	2	116	X	19533765	19533783	TGTACCCTTTCTTGTCGAC		59	19533938	19533956	GAAAGGTGATCACCTCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	kek5	FBgn0031016	FBtr0074707,FBtr0074708	3	2	2	200	X	19360066	19360084	CTTCCAAGATGGACAAGAC		57	19360248	19362351	AGTGATTGGCCACATAGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CCKLR-17D3	FBgn0030954	FBtr0113003	1	1	1	236	X	18660137	18660155	TTCTACAACATCCTGCTGG		59	18659525	18659938	TTCATTATAGACTGCGGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp308a1	FBgn0030949	FBtr0074604	3	1	1	64	X	18605173	18605192	GAACTTAAGGTGCATTTGGG		59	18605219	18605298	GCGGGATCTAAATGAATGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Ing3	FBgn0030945	FBtr0074614	3	1	1	100	X	18545398	18545416	AGAAGAAGCTAACCACAGC		59	18545316	18545334	TTCCAGACTAATCGACGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Frq1	FBgn0030897	FBtr0074545,FBtr0100239	3	2	2	153	X	18062517	18063531	GAGAACAATGATGGCTCCA		59	18063774	18063794	CTATGTTGTACATCTCCTCCC		59	NA	
Drosophila melanogaster	50	CG9777	FBgn0030764	FBtr0074287	1	1	1	60	X	16525180	16525198	AAGCTTAAGGCCAAGATGG		59	16525138	16525157	GTTCGTTAGTTGAATTGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9509	FBgn0030594	FBtr0073978	1	1	1	60	X	14801228	14801249	TTTGTTCTACTCTCACATCCTG		59	14801189	14801209	TGGGATCTGTACTCTTTAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12723	FBgn0030459	FBtr0073738	2	1	1	152	X	13084523	13084541	AATACCACAATTTCCCGGA		58	13084389	13084407	AATTGGCTAGTTGGTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9360	FBgn0030332	FBtr0073613	3	1	1	133	X	11657855	11657955	CCCAGACCAAGATTACGAG		59	11657740	11657758	GATGCAGTAGCTAATGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11122	FBgn0030266	FBtr0073481	3	1	1	61	X	11014957	11014978	GTTCATCCAAGTTGAAGAACTC		59	11014856	11014935	TTTCCGAATGGATTCAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12637	FBgn0030224	FBtr0071504	2	1	1	60	X	10567051	10567069	AGACGACATTCGTTTCCAG		59	10567009	10567028	GAATTCGCATACAATGACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PPP4R2r	FBgn0030208	FBtr0071452,FBtr0071453,FBtr0071451	1	3	3	87	X	10373988	10374006	CTAATCGATCCTCGGAAGC		59	10374057	10374134	GATCGATTGTGCTAACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	rdgA	FBgn0085373	FBtr0112550,FBtr0112552,FBtr0112551	3	3	3	116	X	8918161	8918303	TCTCAATATGTTACGTGCAC		57	8918381	8918400	TATTTGACAATGTCCCTGTG		57	NA	
Drosophila melanogaster	50	Tbh	FBgn0010329	FBtr0089999	3	1	1	109	X	7918327	7919582	TATTTACATGAAGCGCACG		58	7919655	7919673	TGTACAGCTGATCGATACG		58	NA	Nonspecific
Drosophila melanogaster	50	CG1531	FBgn0029985	FBtr0071098	2	1	1	87	X	7844742	7844760	ATTCCCAGCATATTAGCGG		59	7844808	7844907	ACGTAAAGTAATCCTGATCGAG		59	NA	
Drosophila melanogaster	50	l(1)G0155	FBgn0026664	FBtr0071093	2	1	1	121	X	7814713	7814731	TCAAACTATTCGCGTTGAG		58	7814816	7814923	AGTCATGAACTCGTTGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33666	FBgn0053666	FBtr0091645	1	1	1	78	X	6370846	6370923	TTCTTGACTACTCCGAAGC		59	6370786	6370804	TTCTTAGAACGGGAAAGCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3774	FBgn0029849	FBtr0070874,FBtr0070875	2	2	2	60	X	6116022	6116040	TCTTTACGCACATGTTACC		57	6116064	6116082	TGTTGGACTATATTGCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6986	FBgn0029723	FBtr0100551,FBtr0100552,FBtr0070714,FBtr0070713	2	4	4	92	X	4619145	4619163	CCAGCACTATGACTATCCC		58	4619218	4620278	GAGATGTAACCGAAACTGTC		58	NA	
Drosophila melanogaster	50	CG12179	FBgn0025388	FBtr0070695,FBtr0070694	3	2	2	165	X	4525985	4526061	CAGCCAATACTCGAGTTAGG		59	4525839	4525858	TGTCTGACCTTGTTGAAGAC		59	NA	
Drosophila melanogaster	50	CG14423	FBgn0029646	FBtr0070556	1	1	1	60	X	2839753	2839772	GTTCCTAACCTTCAAGAACC		58	2839794	2839813	GATAATGATCGGAATCACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14047	FBgn0040390	FBtr0070465,FBtr0070464	1	2	2	204	X	2262912	2262930	TTATAAAGCGTCGCAACTC		58	2262667	2262744	GATGGCTTGTCGTTATCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3655	FBgn0040397	FBtr0070181,FBtr0113327	3	2	2	132	X	970326	970476	ACAATCTTCAGGTCCATCC		58	970212	970230	GTTAGGTAAAGGTGCTGGA		58	NA	
Drosophila melanogaster	50	CG3703	FBgn0040348	FBtr0070187	2	1	1	231	X	837532	837556	GGAACTAGTACTAGCCTATTATAGG		59	836820	837343	CAAATGGGAATTGAGTCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14632	FBgn0029538	FBtr0070193	1	1	2	88	X	787264	787282	TCGTATACGCGATATGCTG		59	785610	785629	TTAACGTCTCTTCTGATTGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5273	FBgn0040382	FBtr0070136,FBtr0070137,FBtr0070135	2	3	3	64	X	655011	655029	GAGACCTCTAACATGACCG		59	655057	655075	ACACAAATAATGCCTCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40728	FBgn0085769	FBtr0114219	3	1	1	68	U	9902227	9902245	TATTTACGTGAGGTCTCCG		58	9902177	9902196	GACTTCTGTGAATCATCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR41613	FBgn0085822	FBtr0114280	1	1	1	60	U	9112802	9112821	TGAAGATTGAGATAGTCGGG		58	9112761	9112779	CAGAACGAGCACATAAACC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41010	FBgn0085552	FBtr0113965	1	1	1	82	U	6449562	6449580	TTCGATATGCTCGAACTGG		59	6449498	6449516	CATCTGTTTCATCGTTGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hcf	FBgn0039904	FBtr0089124,FBtr0089126,FBtr0089127,FBtr0089125	1	4	4	84	4	383495	383577	GTTGCTAGAAACAGACTCCA		59	383624	383642	TGTAGAACTGTGCAACGAG		59	NA	
Drosophila melanogaster	50	Cyp9f3Psi	FBgn0038034	FBtr0082602	3	1	1	61	3R	8222141	8222159	TTACGCTACTTTCGTACCT		58	8222098	8222116	TTTACATAGGGCTCTACGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pri	FBgn0053327	FBtr0082835	2	1	1	60	3R	9639342	9639361	TAAATCACAGATCTTCGCCA		59	9639384	9639402	CCAACTTCAGTACTGACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1499	FBgn0039852	FBtr0085791,FBtr0085792	1	2	2	84	3R	27386436	27386454	AGTGGATTCGGTTTACCAG		59	27386501	27386586	GTAAGAGTGGCATCTGTAGG		59	NA	
Drosophila melanogaster	50	CG1544	FBgn0039827	FBtr0085755,FBtr0113311,FBtr0085756	1	3	3	86	3R	27027533	27027613	CGAAGACTTTAACATCCATCC		58	27027661	27027679	CAATCGATCTTGACTCCGT		59	NA	
Drosophila melanogaster	50	Nlp	FBgn0016685	FBtr0085552	3	1	1	237	3R	25830772	25831022	TCTACGGAGTCACTTTGAC		58	25835479	25835497	TTCGACTCGTAGAACTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31202	FBgn0051202	FBtr0085510	2	1	1	60	3R	25755623	25755642	CCGTTTATGAACTGACATCC		58	25755582	25755600	CCGGTGAGGGAATATAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14507	FBgn0039655	FBtr0113305	1	1	1	71	3R	25052648	25052955	GATCATAGGGACACTCGAC		58	25052595	25052613	GAACTCCAGACGAATCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ligatin	FBgn0041588	FBtr0085410	3	1	1	60	3R	24976481	24976500	CGAGCAATTTCTACAGACTC		58	24976440	24976458	TTCTTCAGGTCGATTTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr98c	FBgn0046886	FBtr0085187	1	1	1	90	3R	23371394	23371463	TTATTTGGAGGGATGCTGG		59	23371517	23371535	GTCTGTAGCCGATTAGAGC		59	NA	
Drosophila melanogaster	50	CG5938	FBgn0046247	FBtr0113355,FBtr0085159,FBtr0085160	3	3	5	129	3R	23101495	23102020	GCAACATGACGGTATTTGG		59	23102113	23102131	AGGGATTTCTTCAGCACTC		59	NA	
Drosophila melanogaster	50	CG4956	FBgn0039370	FBtr0084920	3	1	1	61	3R	21603667	21603685	TATATTGGGCAACTGGTGG		59	21603624	21603644	CCAGAACTAAGCTATCGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31370	FBgn0051370	FBtr0084829	3	1	1	101	3R	21129281	21129300	CTCAGTTCTAAGGGAAACAC		57	21129363	21129473	AGACCATAATCTTTAAGGCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31104	FBgn0051104	FBtr0084825	3	1	1	81	3R	21112345	21112363	CAAAGAGAATTGTGGGAGC		58	21112471	21112491	CCACCATTATAGGAAGAAAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13646	FBgn0039255	FBtr0084751	3	1	1	161	3R	20774499	20774518	ATAGCTGATAACTTGCTGCA		59	20774642	20774796	TTTGAAGGAGAGGGATTCC		58	NA	
Drosophila melanogaster	50	CG13618	FBgn0039203	FBtr0084643	1	1	1	205	3R	20352623	20352757	GAACCGATCTGGATAAGCA		59	20352926	20352944	TAGTCGCATGTACTTGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13597	FBgn0039124	FBtr0084525	3	1	1	60	3R	19718472	19718490	AGGCTACTGAATCATTGGA		57	19718430	19718448	TTGTTAGATGCTCGAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31365	FBgn0051365	FBtr0084406	2	1	1	235	3R	18950904	18950991	CTATAACATCAAAGAAGACGGC		59	18950630	18950648	GTTGAGGACAACTGGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5791	FBgn0040582	FBtr0084180	2	1	1	110	3R	17913073	17913160	GTCTGACTTGTCCCAATCC		59	17913234	17913252	CATTTCCACGGGAAATGAC		59	NA	
Drosophila melanogaster	50	Cchl	FBgn0038925	FBtr0084185	3	1	1	146	3R	17852269	17852287	AGGAGGTACTTAAGTGGGA		58	17852084	17852102	AGTCATGCCTATCGAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31431	FBgn0051431	FBtr0084137	2	1	1	84	3R	17697790	17697810	CGCATTTGGCTATTGATACTC		59	17697853	17698143	ACTCTGTGTTCTCTGTATAGTC		58	NA	
Drosophila melanogaster	50	lbl	FBgn0008651	FBtr0084092	3	1	1	212	3R	17258988	17259006	AAACTTTGACGAAGAGCAG		58	17236494	17236800	AACCAAGTGATGACCTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15690	FBgn0038825	FBtr0083957	1	1	1	60	3R	16581101	16581119	CTCCTACTTCGGAAACGAG		59	16581142	16581161	ATTAAAGAACGAAGTCTCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4288	FBgn0038799	FBtr0083888,FBtr0083889	1	2	2	155	3R	16333613	16333704	GGATTTGCCGTTAATCACC		59	16333476	16333494	GAAGATAATGCGCCATTCG		59	NA	
Drosophila melanogaster	50	CG4288	FBgn0038799	FBtr0083888,FBtr0083889	2	2	2	157	3R	16333614	16333706	CTGGATTTGCCGTTAATCAC		59	16333476	16333494	GAAGATAATGCGCCATTCG		59	NA	
Drosophila melanogaster	50	CG5835	FBgn0038682	FBtr0083751	1	1	1	118	3R	14977295	14977313	TTTAAACAAACCGCAGACG		59	14975339	14977213	AATCGTCGGAAGTATCCTC		58	NA	Nonspecific
Drosophila melanogaster	50	CG7718	FBgn0038649	FBtr0083682	2	1	1	123	3R	14570555	14570573	AACTGCTTGTCTGGATCAC		59	14570392	14570468	CATTTGGATGAGCCATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pxt	FBgn0038538	FBtr0083507,FBtr0083508	3	2	2	110	3R	13546531	13546681	ACAAGTCTTGGCTCATGAC		59	13546755	13546773	CTTTGCTGAGGACTGAGAG		59	NA	
Drosophila melanogaster	50	CG12265	FBgn0038489	FBtr0083408	2	1	1	100	3R	12975816	12975834	GAAGATGATCCGTGGAAGG		59	12975897	12975977	TCCAGAAATTGTGATACGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4287	FBgn0038388	FBtr0083240	2	1	1	60	3R	11788823	11788841	CTGAAGATGATAAGGCCCG		59	11788781	11788799	GAATCAGTGATCTCCTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14868	FBgn0038330	FBtr0083109	2	1	1	76	3R	11194556	11194632	ACAAGACAATGTTGGATGC		58	11194498	11194516	AATGGTGTCCTCATTTGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	MRG15	FBgn0027378	FBtr0083125	3	1	1	87	3R	11103271	11103347	ATAATAAGAAAGGCAGCGC		58	11103202	11103220	GTGTTGCTATCCTTAGACG		57	NA	
Drosophila melanogaster	50	CG4210	FBgn0038302	FBtr0083049	1	1	2	80	3R	11039935	11040023	CAGAGGAAGATCTTAAACGAG		57	11040065	11040083	TATCGTTGTCTACAAGCAC		57	NA	
Drosophila melanogaster	50	CG9649	FBgn0038211	FBtr0082902	1	1	1	83	3R	10041784	10041802	TCCACGAACAGTACAATCC		59	10041652	10041737	AATCGCCAATATCAACGTG		58	NA	
Drosophila melanogaster	50	Dip-B	FBgn0000454	FBtr0082832,FBtr0082833,FBtr0082831	1	3	3	192	3R	9609801	9609886	GAGAAGGTTCTCAAGGCTG		59	9610099	9610117	CCCTTGGATCATCGATCTG		59	NA	
Drosophila melanogaster	50	Cpn	FBgn0010218	FBtr0082547	1	1	2	165	3R	7989482	7989500	TCCAATTACAGCTCCAGAG		58	7989269	7989354	ATCTGGTTCCGTAGTTTCTG		59	NA	
Drosophila melanogaster	50	CG14731	FBgn0037964	FBtr0082478	1	1	1	60	3R	7757623	7757643	GGGTATAGACTCTATTTCCCA		57	7757665	7758000	CAAGTCCCTTACTCGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6950	FBgn0037955	FBtr0082521,FBtr0082522,FBtr0082519,FBtr0082520	2	4	4	60	3R	7646624	7646642	TTCTCAGTAACTGGTTGGA		57	7646582	7646600	GGTTTCGAATCAGTTCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34114	FBgn0083950	FBtr0110808	1	1	1	85	3R	6871199	6871217	ATTGCCATTGAGTCACTCC		59	6871263	6872117	GTTTATATTCGCCATCAACCTC		59	NA	
Drosophila melanogaster	50	Bruce	FBgn0037808	FBtr0082239	2	1	1	80	3R	6145490	6145508	GATTTGCTTATGATGCCCA		58	6145369	6145447	GTACACCAGGAAAGAAACAC		58	NA	
Drosophila melanogaster	50	Crc	FBgn0005585	FBtr0082103	3	1	1	106	3R	5456247	5456265	GGATACGTGGATCTACAGC		59	5455891	5456177	AGGTCTGAATGCCTTTGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9427	FBgn0037721	FBtr0082104	1	1	1	109	3R	5451275	5451397	TGATCAGTGTGCCAATGAG		59	5451184	5451202	TGTACTGTTTGGTCACCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8436	FBgn0037670	FBtr0081977	3	1	1	83	3R	5085049	5085358	GCTCCTAGGATAAAGATCCA		57	5085404	5085422	AACAATGATCTCCTTGCCT		58	NA	
Drosophila melanogaster	50	CG18193	FBgn0037579	FBtr0081839	2	1	1	68	3R	4169721	4169739	TTGAGGAAGCAATTTCAGG		57	4169770	4169789	TATGTTATCCATACTGCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10435	FBgn0037539	FBtr0081820	2	1	1	79	3R	3837074	3837094	CAACGTATCAGTACTATGGGT		59	3836955	3837035	ATCTTCTTATCGTCGATACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31559	FBgn0051559	FBtr0078616	2	1	1	81	3R	1976751	1981888	GAACTTCAAGGAGAAAGACCT		59	1976690	1976708	ACACTTCGTGTAGGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41461	FBgn0084022	FBtr0111219	2	1	1	60	3R	175903	175921	GCACTCGACTAATTCTTGC		58	175943	176173	TACAATTGATACCGATCCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11370	FBgn0037181	FBtr0078522	2	1	1	112	3L	22705670	22705689	TATATGCAGTATGTCCAGCC		59	22705764	22705847	TGATTGCAATCCTTCAGGT		59	NA	
Drosophila melanogaster	50	CG9063	FBgn0028500	FBtr0078512	2	1	1	210	3L	22253773	22253791	AGGCAGAGACTATCATCGT		59	22253331	22253349	AGTATTGGAAGCCATACGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33288	FBgn0053288	FBtr0078347	2	1	1	66	3L	21422450	21422468	TAAAGATTTGTGACGTCGC		58	21422498	21422988	AAGATTTCGTTGGAGTGTG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG7335	FBgn0036941	FBtr0074865	2	1	1	60	3L	20125849	20125867	CTTCGAATGTCGTAATCCC		57	20125807	20125825	GTTGAATTGTATGACCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Met75Cb	FBgn0028415	FBtr0075116	1	1	1	63	3L	18462674	18462693	CGTATTCAATGGTTTCTTGC		57	18462630	18462648	TATCTGTGCATCCACAGAG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	W	FBgn0003997	FBtr0075133	3	1	1	107	3L	18163175	18165161	AGAAACCACAGAGCTTCAC		59	18163086	18163105	ATTCGATTACACGTCTCCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13040	FBgn0036608	FBtr0075431	1	1	1	225	3L	16318777	16318860	CTTCATTGCTATCTGTGCC		58	16318570	16318588	AGCCACAGTCTTAATCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAP71E	FBgn0036518	FBtr0075567,FBtr0075569,FBtr0075568	3	3	3	89	3L	15593707	15593796	TCAAGTTCAAGGTCTCTACG		59	15593848	15593866	AGTACTCATAGTTGTCGCG		59	NA	
Drosophila melanogaster	50	CG32147	FBgn0047178	FBtr0075647	3	1	1	63	3L	15136796	15136903	GCCATATCTTGTTATCCATGTC		58	15136754	15136773	CAGCTTCTCGATGTATACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Leucokinin	FBgn0028418	FBtr0075722	1	1	1	60	3L	14553811	14553829	TGGCAAAGATAGTCCTGTG		59	14553769	14553787	CTGGCTCCATAGACTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8833	FBgn0036386	FBtr0075792	2	1	1	90	3L	13920553	13920572	CAAACTGAACTAGCCAAGGA		59	13920424	13920500	TCATAGCAGAAGGCAAGTC		59	NA	
Drosophila melanogaster	50	CG17672	FBgn0083978	FBtr0110982	2	1	1	247	3L	13022402	13022422	GGTGCTTAAGTAGAAGTTCTG		58	13028410	13028428	GTTCCAGTTGGAGAATGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10754	FBgn0036314	FBtr0075944	1	1	1	74	3L	12806373	12806391	AGTTCTTCCTTCAGTTCGC		59	12806317	12806335	GTGCCCTATGTAGATTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nrx-IV	FBgn0013997	FBtr0075999,FBtr0075998	1	2	2	81	3L	12146776	12146794	CGTGTGAACTTGAATCTCG		58	12146839	12147059	GTCCATCCGAGTAGAACTC		58	NA	
Drosophila melanogaster	50	CG7557	FBgn0036159	FBtr0076174,FBtr0076175	3	2	2	223	3L	11438776	11438857	AGATACTTTCTGCAGTCCC		58	11439044	11439062	AGGAGTGAGCATTTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8065	FBgn0036075	FBtr0076296	3	1	1	238	3L	10209382	10209460	TTCTGTTTCGCATCAAAGG		58	10210144	10210162	ATTTCATCAGATCGGAACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6707	FBgn0036058	FBtr0076356,FBtr0076358,FBtr0076357	2	3	3	108	3L	9888976	9889075	ACATACTCGATTGCTTCGG		59	9888886	9888906	CTTTAAGGCGGAAATAGTAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6709	FBgn0036056	FBtr0076360,FBtr0113156	2	2	2	60	3L	9886557	9886628	ATGCGATACAAGAAATGGC		58	9886515	9886534	CCAAGTTATTTAGGACCTCG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG4080	FBgn0035983	FBtr0076494	3	1	1	135	3L	9383210	9383386	TAATAGACTGGCCCTTCTG		58	9382210	9383111	AGTAGAATTCTGTTGCGTG		57	NA	
Drosophila melanogaster	50	Dhpr	FBgn0035964	FBtr0100531,FBtr0100532,FBtr0076531	2	3	3	89	3L	9128542	9128561	CATGAACCGTAAATGGATGC		59	9128613	9128631	TCTTGGGTCCACTTAAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Argk	FBgn0000116	FBtr0076546,FBtr0112792,FBtr0076544,FBtr0076545,FBtr0112791,FBtr0076543	1	6	6	65	3L	9042989	9043007	AGATGGAAAGCAAGGTCAG		59	9042942	9042960	GGTAGAACTTGCCCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Prm	FBgn0003149	FBtr0076596,FBtr0076593,FBtr0076594,FBtr0076595	2	4	4	222	3L	8727222	8727349	CGAAGTCAAGAACTTGTCC		58	8727018	8727036	GATGAGGTTCTTCTGGTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13672	FBgn0035862	FBtr0110798	1	1	1	102	3L	8242040	8247971	ATGTCATAAGAGCCGAGAC		58	8248036	8248055	GAATTGTTGGAGAACTCGAC		58	NA	
Drosophila melanogaster	50	Atg18	FBgn0035850	FBtr0076693,FBtr0076692,FBtr0076691	2	3	3	124	3L	8181566	8181584	AATATCTGGTGTCCAGCTC		58	8181672	8182396	AAACGAGTAACCCATCCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG8368	FBgn0035707	FBtr0076976,FBtr0076977	3	2	2	61	3L	6600122	6600140	GAGATGATACTTCCACCGC		59	6600165	6600239	GGAATCTTGGCTATCTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myt1	FBgn0040298	FBtr0077118	2	1	1	76	3L	5771081	5771099	CACAAACCAAGGCAAATCC		59	5770965	5770983	CGTGTACATGAACGTACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10673	FBgn0035590	FBtr0077180	2	1	1	61	3L	5132166	5132184	CAGTTCATCCAGGAAACAG		58	5132123	5132141	TCCAGCAGACATTTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Teh3	FBgn0040697	FBtr0073257	1	1	1	60	3L	4184373	4184392	CCTGCATCCAGATCTATGTG		59	4184332	4184353	CAGTTCTGGAATATGAGATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12605	FBgn0035481	FBtr0073166,FBtr0073167	1	2	3	256	3L	3961756	3961774	GAACTCGCGTTCAATTCTC		59	3959843	3959861	AAATCACCTTGCCATCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10858	FBgn0035458	FBtr0073190	2	1	1	193	3L	3751227	3753056	TTCAATAGCGATTTCCTCTG		57	3748686	3748704	GAAAGCTAATCAAGGCCAG		58	NA	
Drosophila melanogaster	50	CG1291	FBgn0035401	FBtr0073023	2	1	1	64	3L	3145173	3145192	GTTCTCTTTCCAAGCATTCG		59	3145217	3145237	TGGAGATAGGAACAAGATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Spec	FBgn0003470	FBtr0072789	2	1	1	134	3L	1781201	1781220	AAAGATCATAGAGGAACGCG		59	1779977	1781104	ATGGACGTTCTTGTCTCTG		59	NA	
Drosophila melanogaster	50	CG32320	FBgn0052320	FBtr0113433	3	1	1	86	3L	1400092	1400112	ACCAGTACTATCAGATCATGG		58	1400157	1400230	GTCTCATTGAGCTTATCTTCAC		58	NA	
Drosophila melanogaster	50	CG2277	FBgn0035204	FBtr0072729	3	1	1	60	3L	1306444	1306463	CTGATGAACATCTACAGTCG		57	1306403	1306424	TGCTCTTGAAATAGAGACTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3402	FBgn0035148	FBtr0072559	1	1	1	168	3L	652265	652451	CGGATTATGGCATCTATGTG		58	652116	652134	ACCAGCATGTTGAGTATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12851	FBgn0035086	FBtr0072394	1	1	1	89	2R	20840516	20840586	CGAATTGGATTCAAACGGA		58	20840639	20840657	TCTTGCATAGAGCTCTTGG		59	NA	
Drosophila melanogaster	50	CG3907	FBgn0034958	FBtr0072195,FBtr0072196	3	2	2	98	2R	19908024	19908099	TTGAGAAAGAGATAACGCTG		57	19907945	19907963	TAATATTGCCCATGCTCTG		57	NA	
Drosophila melanogaster	50	l(2)efl	FBgn0011296	FBtr0072100	1	1	2	259	2R	19572570	19572588	AAAGCATGAGGAGAAGCAG		59	19572267	19572285	AAAGGATTGAGTCCTAGGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13511	FBgn0034759	FBtr0071863	2	1	1	222	2R	18547262	18547280	GAAATGGTGACCGTAACCA		59	18547466	18547542	AGCAGCAGATATACAAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6613	FBgn0034694	FBtr0071758	3	1	1	97	2R	17993065	17993154	AGCACCACATTCAGATGTC		59	17993215	17993233	CGCTTACGTATTCGTTCAC		58	NA	
Drosophila melanogaster	50	CG13492	FBgn0034662	FBtr0071741,FBtr0071742	3	2	2	94	2R	17715211	17715301	AGACACGCATCATAAGTGG		59	17715135	17715153	ACAGTTTCCTGTTCCATCG		59	NA	
Drosophila melanogaster	50	CG10433	FBgn0034638	FBtr0071690	1	1	2	255	2R	17494114	17494195	AGTTACTACATGCTGCAGG		59	17493603	17493621	CATTCTTGCAATCCGAACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18375	FBgn0034606	FBtr0071622,FBtr0071623	1	2	2	105	2R	17109399	17109417	AATATCCTGACAGCAGCTG		59	17109240	17109330	ACTGATTGCGGTACATCAG		59	NA	
Drosophila melanogaster	50	king-tubby	FBgn0015721	FBtr0089600,FBtr0089599	1	2	2	84	2R	17010146	17010164	ATCCTTCACGGTCTTTGAC		59	17010209	17010287	GTTGGTGTCATAAATGATGACG		59	NA	
Drosophila melanogaster	50	CG34202	FBgn0085231	FBtr0112395	1	1	1	76	2R	16640463	16640481	CTCCACCAATGATCTGGAC		59	16640521	16640539	CGCTATTGGCCTCATACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp56c	FBgn0046879	FBtr0086478	2	1	2	106	2R	15587995	15588094	GATTGCTTTGTGAGCTGTC		59	15587907	15587926	TTCTCATGCTGTATGATCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	mip40	FBgn0034430	FBtr0086560	1	1	1	67	2R	15178917	15178935	GTACCTCCGATCTTCTGTC		58	15178868	15178886	ATGCTTTATCCAGTGTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rhi	FBgn0004400	FBtr0086897	1	1	1	60	2R	13519493	13519511	GTACTTCGAGAGCTTGAGG		59	13516245	13519469	GTACAAACCCGGTACTAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG30093	FBgn0050093	FBtr0087199	3	1	1	131	2R	11831773	11831791	CCAAGTACGAGTACCTGAG		58	11831886	11831904	TTTAATCCTCCTCAGCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha36	FBgn0022097	FBtr0087335	3	1	1	68	2R	11429524	11429542	GATCAAGATCACCAACCGT		59	11429574	11429592	AAAGTCCTATCGATTCGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hr51	FBgn0034012	FBtr0114456	1	1	1	113	2R	11226338	11226419	ATAACAAAGGAGGAGCTGG		58	11226496	11226514	GAGAACTATCGCCTTGAGG		59	NA	
Drosophila melanogaster	50	Arf51F	FBgn0013750	FBtr0087377,FBtr0087375,FBtr0087379,FBtr0087376,FBtr0087378	2	5	5	166	2R	11211495	11211514	CTATTACACGGGTACACAGG		59	11211643	11211715	GTTTCATTGCATCAGGCAG		59	NA	
Drosophila melanogaster	50	CG8152	FBgn0034008	FBtr0087392	1	1	1	60	2R	11198381	11198399	CGTGAGTTCTACAAGGAGG		59	11198339	11198358	TACTTGGAAGGTTAGGTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8090	FBgn0033995	FBtr0087404	1	1	1	82	2R	11087677	11087695	TGAATCCTTCCAAACCCAG		59	11087554	11087631	TTGATTGATGTCTTCGCCA		59	NA	
Drosophila melanogaster	50	AttA	FBgn0012042	FBtr0087437	1	1	1	262	2R	10634905	10634923	ACAAGCATCCTAATCGTGG		59	10635149	10635231	TGACCAGCATTGTTGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(var)2-HP2	FBgn0026427	FBtr0087502,FBtr0087501	2	2	2	81	2R	10498985	10499138	ACAAGTTAAACCAGCTCGA		59	10498922	10498940	TTCTGACTCCGTCTTTGAG		58	NA	
Drosophila melanogaster	50	CG17386	FBgn0033936	FBtr0087488	1	1	1	60	2R	10310291	10310310	TTTCGCCTATATCTTCTGCT		58	10310333	10310351	CTGCTTATACCAGACACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vg	FBgn0003975	FBtr0087785	3	1	1	82	2R	8774680	8774700	GGTGCCTACTATCCATATCTG		59	8774743	8778988	TACAAATCCTGGTTGAACCT		58	NA	
Drosophila melanogaster	50	Cpr49Ae	FBgn0033728	FBtr0087920	3	1	1	95	2R	8291003	8291680	TACAACTATGCCTATGAGACG		59	8291737	8291755	GATGATCACGTCACTGGAG		59	NA	
Drosophila melanogaster	50	Cpr49Aa	FBgn0050045	FBtr0113359	3	1	1	136	2R	8264211	8264291	CACACTGCTCTTCATAGCA		59	8264391	8264409	GATACTTGTAGGAGCCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13160	FBgn0033720	FBtr0087911	2	1	1	80	2R	8262316	8262386	TGGAACTTTCTAAGGACGA		57	8262430	8262448	CATGTGGACTGACATAGTG		57	NA	
Drosophila melanogaster	50	CG8378	FBgn0027495	FBtr0087983	2	1	1	119	2R	8029885	8030015	CTACGACAATTACGGTGCT		59	8030096	8030116	AACATAGGATAGTTCAGCTCG		59	NA	
Drosophila melanogaster	50	CG8271	FBgn0033657	FBtr0088032	3	1	1	103	2R	7737359	7737479	GTACTCACAGGTATTGGAGG		59	7737545	7737563	GAAACGCAGATTCCATTGG		59	NA	
Drosophila melanogaster	50	CG8800	FBgn0033408	FBtr0088555	2	1	1	71	2R	5283261	5283279	CATTAAGCAGATATCCGGG		57	5283154	5283172	ATTAGGTTGTAGCTGAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8232	FBgn0033352	FBtr0088654	3	1	1	82	2R	4818147	4818225	CCATAAGTGATGAGAACTCC		57	4818268	4818288	CCCAAAGATCTTACTGATGTC		58	NA	
Drosophila melanogaster	50	CG8248	FBgn0033347	FBtr0088678	1	1	1	83	2R	4807087	4807105	TTATTTACCTGTTCGCCCT		58	4806965	4807040	TGTTCTGCGACTTGTAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8734	FBgn0033315	FBtr0088728	3	1	1	60	2R	4514522	4514541	CATGCAGTCCCTGTATATCC		59	4514481	4514501	GTCCACTTTCAGCATATACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp4e2	FBgn0014469	FBtr0088745	3	1	1	120	2R	4333713	4333731	AACTGTACGAAGAGGTCTC		58	4333814	4333893	TCCTTAAATAGTTTGCGCTG		58	NA	
Drosophila melanogaster	50	CG34216	FBgn0085245	FBtr0112409	1	1	1	179	2R	3591903	3591923	GACTTTGGAGATGTATTGCTC		58	3591416	3591763	GCTTTGCATAAAGGGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2144	FBgn0033187	FBtr0088904	3	1	1	81	2R	3408120	3408198	CCATCGGAGTGATTACTACAC		59	3408241	3408259	ATCGCCTTCTCTTAAAGGG		59	NA	
Drosophila melanogaster	50	CG12828	FBgn0033145	FBtr0112770	1	1	1	155	2R	3037040	3037058	ATACTGTCCCATTGTGTCG		59	3036847	3036923	GTTTACCACTAGGAACAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1294	FBgn0033030	FBtr0086035	1	1	1	60	2R	1552908	1552927	TTCAACGATCATATTCGTGC		58	1552949	1552968	TACATCCGGAGATTTGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30441	FBgn0050441	FBtr0086093	3	1	1	143	2R	1239551	1239569	GAGTTGAGCATCCAAACCT		59	1239426	1239444	CCTTATCGACATCTTTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Atf6	FBgn0033010	FBtr0086081,FBtr0086079	3	2	3	154	2R	1036542	1036563	CAACGTATGATTAAGAACCGAG		59	1040309	1040328	AGCAGAAATATCTGATCCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41442	FBgn0084007	FBtr0111281	2	1	1	60	2R	972181	972201	ACTATTTGCTCTACCCTATCC		58	972222	972241	AAATCGTACAGCTAGATCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33828	FBgn0053828	FBtr0091832	1	1	1	60	2L	21476754	21476773	GGTCAATGGAAAGCTTATCC		58	21476796	21476814	CGACAGTTTGAAAGATCCA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33813	FBgn0053813	FBtr0091817	1	1	1	60	2L	21451504	21451523	GGTCAATGGAAAGCTTATCC		58	21451546	21451564	CGACAGTTTGAAAGATCCA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Catsup	FBgn0002022	FBtr0081143	3	1	1	60	2L	19042312	19042386	AAGCCGGATTTGGATATGAG		59	19042408	19042427	TGATAAGAAGAGTTGAGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17323	FBgn0032713	FBtr0081104	3	1	1	254	2L	18825167	18825251	AATTACTATCGGTTCCCGC		59	18825467	18825487	CCCAACTAATCAGGATCACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15144	FBgn0032648	FBtr0080992	3	1	1	92	2L	17528322	17528340	GAGTTGAAGAACAAGTGCG		59	17528190	17528268	AGAAGATTCCCTATAGAGGGT		58	NA	
Drosophila melanogaster	50	CG15141	FBgn0032635	FBtr0080979	2	1	1	60	2L	17412856	17412874	GCTTTACAAGGAACTTGCC		59	17412898	17412916	GTACGTCTTAGCCGAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13277	FBgn0032599	FBtr0080934	2	1	1	60	2L	16742960	16742978	CAACAATGACGGTAAGGAG		58	16742918	16742936	CAAGTACTTGGAGAGGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4793	FBgn0028514	FBtr0080794	2	1	2	112	2L	15926181	15927003	AATTGGCCCTCCATAATCC		59	15927078	15927097	GATTCTGATTCGGTGTTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34165	FBgn0085194	FBtr0112356	3	1	1	103	2L	14714009	14714027	ACGATTTGAAGGTGGTCTG		59	14714094	14714112	GACCTCTGAAGATGACACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33090	FBgn0028916	FBtr0080624	2	1	1	184	2L	14343685	14343760	AATGATGAAACCCTTCCCG		59	14343908	14343926	TTGTACATGCGGTATTCGT		59	NA	
Drosophila melanogaster	50	CG32970	FBgn0052970	FBtr0114461,FBtr0080622	3	2	2	79	2L	14309126	14309144	CAACACTTTATACCGCTGC		59	14309420	14309438	TTAGGCTGGCTTTCTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ance-3	FBgn0032536	FBtr0100327	3	1	1	98	2L	13916557	13916632	TGGATAGGTATAATCGCCTG		58	13916693	13916711	TGTAGTGAAGATCGCACTG		59	NA	
Drosophila melanogaster	50	CG9305	FBgn0032512	FBtr0080471	3	1	1	104	2L	13372248	13372320	AAACCCTAAGAAGCGTTCC		59	13372162	13372180	AGCTTTGTACTCGTTACGT		58	NA	
Drosophila melanogaster	50	CG9306	FBgn0032511	FBtr0080472	3	1	1	75	2L	13370420	13370438	AGAAGGAGTTTGTGACCTG		59	13370363	13370382	TAAGATTAGTGGTGTCCCAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG16820	FBgn0032495	FBtr0080452	2	1	1	146	2L	13249403	13249421	AATTTCACCGATAACGGCT		59	13249531	13249614	CTTGATGTTGTCGATGGTG		58	NA	
Drosophila melanogaster	50	Cry	FBgn0005664	FBtr0080281	1	1	1	76	2L	11944243	11945003	GACATACTTGTTGCTCTGC		58	11945043	11945061	TAAGATCGATTGGACGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6488	FBgn0032361	FBtr0080248	1	1	1	81	2L	11497784	11497802	GAGTTCTTTAAGACCGCTG		58	11497663	11497739	GTCGCTGATCTTATTGTGC		58	NA	
Drosophila melanogaster	50	CG6495	FBgn0027550	FBtr0080114	1	1	1	60	2L	10764352	10764370	ACGATGAGGAAACGTACAC		59	10764449	10764468	TTGACCTTCTTGTGTTTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5640	FBgn0032207	FBtr0080077,FBtr0080075,FBtr0080076	3	3	3	80	2L	10275747	10275765	TGCTTTCCTAGCATATCGC		59	10275618	10275705	TGATATAAGACGCCGATTGAG		59	NA	
Drosophila melanogaster	50	hoip	FBgn0015393	FBtr0079846	3	1	1	70	2L	9699937	9700018	GACTGAGGAAGTTAATCCCA		58	9700051	9700069	GCAAGTTCATGATCTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cks30A	FBgn0010314	FBtr0079799	2	1	1	60	2L	9331061	9331081	AAGGACATTTACTACTCCGAC		59	9331102	9331193	AAACCACATGTCTGTACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13398	FBgn0032042	FBtr0079710	2	1	1	60	2L	8414642	8414660	CTCTTCTCCTTCGAAGCAG		59	8414600	8414618	CTCGAAACGTGTAGATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13384	FBgn0032036	FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079658	2	4	6	231	2L	8385087	8386224	ATACAGTCAGTATTCCCGA		57	8386516	8386535	TTATAGGACTTATCCGTCGA		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079622	1	1	4	84	2L	8244491	8244977	CGGAGAAGGTAAACCTCTC		59	8244425	8244443	TTCTTCTCGTTTAGGCGAC		59	NA	
Drosophila melanogaster	50	CG31906	FBgn0051906	FBtr0079412	1	1	1	207	2L	7225793	7225811	TACAATGCCGATAAGTCGG		59	7225060	7225622	CATGGTTGCCATTGATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ppk14	FBgn0031803	FBtr0079252	2	1	1	208	2L	6355790	6355906	GTTTCTGGCTAACAGTGGT		59	6356078	6356096	CATATACTTCTGGCCCTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG31644	FBgn0051644	FBtr0079159	2	1	1	60	2L	5818141	5818159	TTACTCCACTTACGATCCC		58	5818099	5818117	CGATAGGTATCCTCCACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12512	FBgn0031703	FBtr0079077	2	1	1	144	2L	5339563	5339581	CTTTCTAAACGCCCATCCA		59	5339375	5339393	ATAGGCCTTTAAGGTCTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15436	FBgn0031610	FBtr0077442	2	1	1	60	2L	4464826	4464846	TGCCAGTTTCTATAAGCAGAG		59	4464868	4464886	TCACTTGTGTATCTCGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpb	FBgn0011570	FBtr0077881	1	1	1	60	2L	1705700	1705719	TATGCCTTCGATCAGTACAG		58	1705742	1705760	ATAGGTAGACGGAGGAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11601	FBgn0031244	FBtr0078137	1	1	1	60	2L	282366	282384	CTTTACATCATCTGGCTGC		58	282324	282342	GAATGGGATACACCCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mir-11	FBgn0046832	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG8945	FBgn0030815	FBtr0074411	3	1	1	123	X	16978206	16978224	CAGATTTGGCGTCTAAAGC		59	16978000	16978119	CATCCGTAAGACCTCTGAG		58	NA	
Drosophila melanogaster	50	Traf3	FBgn0030748	FBtr0074275,FBtr0074274,FBtr0074273	1	3	3	89	X	16310687	16310705	AAACTGGAAGAGTCCAAGC		59	16310758	16310836	TATATCCAGCCGTAGAGCA		59	NA	
Drosophila melanogaster	50	CG4239	FBgn0030745	FBtr0074270,FBtr0074269,FBtr0074268	2	3	3	243	X	16281095	16281113	AATGTTTCCGTTCTTCGAC		58	16281320	16281395	GTAGAAGACGACGTACCAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15604	FBgn0030713	FBtr0074157	1	1	1	60	X	15845182	15845201	GTAGTGAGTCATCTCAAGGG		59	15845141	15845162	GGTTTACGGTGATTAAGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Stim	FBgn0045073	FBtr0074161,FBtr0074160,FBtr0074159	1	3	3	80	X	15829503	15829521	AGAATGTTCTGTACGGTCG		59	15829367	15829460	TAATACGTGCTCTAGAACCC		58	NA	
Drosophila melanogaster	50	CG2061	FBgn0027498	FBtr0073429	3	1	3	218	X	10986709	10986727	ACAAACATTCTCGTCCCTG		59	10987088	10987106	AAGGGATTCTTCAGGTAGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	ras	FBgn0003204	FBtr0071496,FBtr0071494,FBtr0071495	1	3	3	90	X	10641989	10642007	CTACCCTATTTGGAGTGCG		59	10642057	10642150	GGCCATTATAGATCATATCCCTC		59	NA	
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274	2	10	10	164	X	8768354	8768372	GGATGAGAACGAGAACGAG		59	8768131	8768227	TCTTGTTTCAGAGCCTTGAG		59	NA	
Drosophila melanogaster	50	Marf	FBgn0029870	FBtr0070909,FBtr0070910	1	2	3	124	X	6263370	6263389	TGGAGTTTAAGTTCAGCTGG		59	6263476	6263563	TACGCTGTGTCCAATACTG		59	NA	
Drosophila melanogaster	50	fs(1)M3	FBgn0005390	FBtr0070892	1	1	1	83	X	5856877	5856895	TGATCTGATCCGAACTGTG		59	5856761	5856833	ACACTTAGATCTTCATCTGGAG		59	NA	
Drosophila melanogaster	50	CG4857	FBgn0026083	FBtr0070643	3	1	1	109	X	4015176	4015194	CAATCAGTTCGACTTGGAC		58	4015267	4015502	TCTGAGGATCCAATTGCTC		59	NA	
Drosophila melanogaster	50	CG12498	FBgn0040356	FBtr0070489	2	1	1	60	X	2704472	2704490	TTAACCAGGCCATAAGTCC		58	2704514	2704532	TACAGTTCGACCTTCTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4293	FBgn0024983	FBtr0100475,FBtr0070090,FBtr0070089,FBtr0100476	3	4	4	159	X	422615	422634	CTTTCACCACCATATACGCT		59	422414	422432	AAGGTTACTAGGTGATCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG41497	FBgn0085658	FBtr0114103	1	1	1	60	U	1683934	1683952	TCATCAATTTGGTTGGCAG		58	1683892	1683910	GTTGCATGATAGCTGTGAG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2126	FBgn0039876	FBtr0085857	1	1	1	86	3R	27601402	27601477	GTTGATCTATTACTCCTTTCCG		58	27601337	27601355	GTTTGATCCAGTTTGAGGG		58	NA	
Drosophila melanogaster	50	PH4alphaEFB	FBgn0039776	FBtr0085650	1	1	1	122	3R	26310458	26310953	CCACCGTTCTATTCTATATGAG		57	26311034	26311054	CATCTCTATGGAGATTCATCC		57	NA	
Drosophila melanogaster	50	CG7593	FBgn0039687	FBtr0085461	1	1	1	60	3R	25550536	25550556	CAAACAGAGATTTGTGGAGAC		59	25550496	25550514	GTAGCTCAGAGATTCGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6195	FBgn0038723	FBtr0083803	1	1	1	122	3R	15473741	15473759	ATTTGATGTGCTCAAGAGC		58	15473584	15473655	GTGAACTCATAGTTTGCCG		58	NA	
Drosophila melanogaster	50	vib	FBgn0026158	FBtr0083745	1	1	1	89	3R	15044180	15044198	AGAGATAGTGCACATCGAC		58	15044046	15044127	TTCTTTGACTGGTAGGTGG		58	NA	
Drosophila melanogaster	50	CG17836	FBgn0038661	FBtr0083701,FBtr0113246,FBtr0083702,FBtr0083703,FBtr0083700	3	5	5	92	3R	14751507	14751633	AATGATGATCGGTTCGAGG		59	14751689	14751707	CTCTACGATGTCTGCATGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG14883	FBgn0038432	FBtr0083291	1	1	1	80	3R	12282428	12282522	CAGCCATTAAGAAGTGCCT		59	12282566	12282584	CGACTATTTCACCACAGGA		58	NA	
Drosophila melanogaster	50	CG34404	FBgn0085433	FBtr0112669,FBtr0112668,FBtr0112667	2	3	3	60	3R	11191520	11191538	TGAATCCGGAGAAGATCCA		59	11191416	11191497	GACCAGATTAATTTGCTCGT		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG6499	FBgn0038309	FBtr0113238	3	1	1	92	3R	11073839	11073912	CACCAGCTCCATCTATTCC		59	11073765	11073783	GTAATGGACACTAGGGAGC		59	NA	
Drosophila melanogaster	50	CG9588	FBgn0038166	FBtr0082849	2	1	1	76	3R	9501449	9501531	GAAAGAGCTGGTCTCTGTG		59	9501391	9501409	AGATCTCCCTTGAAGTTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Fmr1	FBgn0028734	FBtr0082200,FBtr0082198,FBtr0082199	1	3	5	192	3R	5930726	5930803	GTTTCGAATCAAGATCGCTG		59	5930471	5930489	AAGCTGCTGATCAATCTCC		59	NA	
Drosophila melanogaster	50	CG8436	FBgn0037670	FBtr0081977	2	1	1	83	3R	5085049	5085359	GCTCCTAGGATAAAGATCCAG		59	5085404	5085422	AACAATGATCTCCTTGCCT		58	NA	
Drosophila melanogaster	50	CG40057	FBgn0058057	FBtr0111158	1	1	2	108	3L	24518814	24518832	AATGATTATGTCGCCACAC		58	24518724	24518742	ATAACAGTTCGCGGTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075003	1	1	11	85	3L	19292231	19292507	ATATTTATGCAACCAGCGC		58	19292164	19292182	TATGTCCTTCACATGCTCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG7441	FBgn0036763	FBtr0075141	2	1	1	88	3L	17843610	17843628	AGTCCCGTCTTCTAAAGGA		59	17843679	17843886	ATGAGTGGACTTGTAAAGCA		59	NA	
Drosophila melanogaster	50	Eig71Ea	FBgn0004588	FBtr0075587	2	1	1	84	3L	15642348	15642429	CTAAATTGCTTGGGTTGGC		59	15642282	15642300	ACTATTAAGTACGCCTGCG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Prosbeta2	FBgn0023174	FBtr0075629	2	1	1	135	3L	14993472	14993756	AACATATACTGCTGTGGAGC		59	14993854	14993872	GCTTCAACATCGTATTGGC		59	NA	
Drosophila melanogaster	50	CG6038	FBgn0036198	FBtr0076123	2	1	1	174	3L	11704185	11704203	GTGCGGAGAAGTTTAACTG		58	11703973	11703991	CATCCTTCGTATTTGTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32373	FBgn0052373	FBtr0076806,FBtr0076805	1	2	2	80	3L	7750857	7750940	CTGTAATGATATCGACGAGTG		58	7750980	7751000	CATATGAATTCACCAGGAAGG		58	NA	
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133	1	5	11	192	3L	3578467	3593333	TTGCAGATATGGAGACTGG		58	3593488	3593507	CTGTTTGTTCAGAAAGACCT		57	NA	
Drosophila melanogaster	50	sls	FBgn0086906	FBtr0072849	3	1	2	81	3L	2046157	2046292	CGTATTTGAACGTCCTGGA		59	2046094	2046112	GTCAGGAGTATGAATCGGC		59	NA	
Drosophila melanogaster	50	CG13924	FBgn0035286	FBtr0072835	3	1	1	60	3L	1870668	1870687	AAGAGTCTAACCAATCTGCT		58	1870710	1870728	CATTTAAGGTGCGTTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13923	FBgn0035277	FBtr0072783	1	1	1	129	3L	1803449	1803468	GATCTACAACTTCGAGTTCC		57	1803560	1805020	GACATCGTAGACTTGACTG		57	NA	
Drosophila melanogaster	50	CG1233	FBgn0035137	FBtr0072549,FBtr0072548	3	2	2	135	3L	364779	364797	ACACCTGTGATCATGAGAC		58	364896	364975	TGAAGGTGTATCCGAAAGG		58	NA	
Drosophila melanogaster	50	CR33471	FBgn0053471	FBtr0088081	2	1	1	60	2R	7586961	7586979	GTGAGAACAGTGTCTTCAG		57	7586919	7586938	ATAGACGAACATATCCATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mlp60A	FBgn0011643	FBtr0072180	1	1	1	143	2R	19962571	19962589	TACTTCACAGAGTACCTCC		57	19962825	19962843	TTGTGGAATTTGTAGCCTC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG17390	FBgn0033939	FBtr0113081	3	1	1	176	2R	10347958	10347976	CTTGAAGCATCACGTACAG		58	10349608	10349702	ATCTTCAAGTGGTCACTCC		58	NA	
Drosophila melanogaster	50	Dp	FBgn0011763	FBtr0087740,FBtr0087741	3	2	2	84	2R	9114280	9114362	CCTATTGGGACTGGATAAGG		58	9114408	9114427	GTATTTGGCAAGGTTTGGAG		59	NA	
Drosophila melanogaster	50	vis	FBgn0033748	FBtr0087945	3	1	2	87	2R	8396972	8397090	CAGTGTCATCTACAGCTGG		59	8396903	8396921	GATCATGGTTGCTTGAAGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG12902	FBgn0033512	FBtr0088356,FBtr0088357	2	2	2	61	2R	6242540	6242558	CAAGGCCAAGAAGTAGGAC		59	6242497	6242518	GCTTGGATGATTGATATTACCG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	cdc2rk	FBgn0013435	FBtr0088429	1	1	2	98	2R	5955815	5955890	CTATGGAATTGTCTATCGCG		58	5955736	5955754	CTAATTGGCAGACCATCCT		59	NA	
Drosophila melanogaster	50	bft	FBgn0041606	FBtr0080320	1	1	2	112	2L	11960349	11960410	TTGAGTGTGATTACGCCTC		59	11960255	11960273	TTATCTTCGACTTCTGGCC		59	NA	
Drosophila melanogaster	50	CG17715	FBgn0041004	FBtr0111245	3	1	6	176	2L	22737570	22741711	TTATACGAGAGTCAACTGGC		59	22741970	22742039	AATGCTGTACAATTGACCTG		58	NA	
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445	3	8	8	80	2L	20877196	20877215	TCTGCAAGAAGATACCAGTG		59	20877070	20877156	AAATATACTGGGTACTCAGTCC		58	NA	
Drosophila melanogaster	50	VhaSFD	FBgn0027779	FBtr0080941	2	1	3	121	2L	16724986	16725902	GTGTGATACCGAACAACGA		59	16724883	16724901	GATACGGATCAGAGTGCTG		59	NA	
Drosophila melanogaster	50	CG31824	FBgn0051824	FBtr0080789	2	1	1	109	2L	15886794	15887912	ACTTGGGAAAGATACAAGC		57	15887984	15888003	AATCTGTGAACGATATCGAG		57	NA	
Drosophila melanogaster	50	CG3994	FBgn0028516	FBtr0080715,FBtr0080714	3	2	2	60	2L	15229860	15229878	TCACGATCATGAAGGATGC		59	15229657	15229677	TAGTGCATATAGTTGGGAGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9008	FBgn0028540	FBtr0080577,FBtr0080576	2	2	2	157	2L	13775381	13775399	GAATCCTTGGATCGATCGA		58	13775035	13775262	CCTCGATGATAATCTGAAGGA		58	NA	
Drosophila melanogaster	50	CG3841	FBgn0032131	FBtr0079836	2	1	1	60	2L	9591154	9591173	GTTTAACCAGCTGGTTTACC		59	9591321	9591339	ATATCCGTGCTGTTTAGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34310	FBgn0085339	FBtr0112506,FBtr0112507	1	2	2	96	2L	6674206	6674224	ACTGAAACTAGTGGAACCA		58	6674356	6674374	GTCGATCCAATACCGATGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	syt	FBgn0004242	FBtr0077727,FBtr0077728	1	2	4	80	2L	2793375	2793393	GGAAAGGGTAAGAAGGGTG		59	2793250	2793333	TTCCTCCATATCAGGTTTCTC		58	NA	
Drosophila melanogaster	50	Ent1	FBgn0031250	FBtr0078095	2	1	2	80	2L	357474	357492	CTACCTCGTGTTCTACCTG		58	357181	357431	TACTTCCAGTAATCTTCCGC		59	NA	
Drosophila melanogaster	50	CG31973	FBgn0051973	FBtr0113416,FBtr0078163,FBtr0078164	2	3	4	92	2L	38598	38618	CGATGGTATTATTCACCAAGC		59	35204	38544	GACTCAACTCTATAGGCGG		58	NA	
Drosophila melanogaster	50	skpD	FBgn0026174	FBtr0074796	2	1	1	60	X	19707138	19707156	TGTTCGAAATTACAGTGGC		58	19707180	19707198	CAACAGAGATCCTCTAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS10b	FBgn0031035	FBtr0074732	2	1	2	105	X	19492110	19492199	ACGGGAGTATTACGATACG		58	19492495	19492513	AAGAGGTACTCGTAGATCG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Andorra	FBgn0030898	FBtr0074591	2	1	1	60	X	18072904	18072922	GCTAATCGGCTATTTCCCA		59	18072862	18072883	CCTATATTCCACATAGAGCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18210	FBgn0030636	FBtr0074081	3	1	1	152	X	15314087	15314105	ACAAGAAGATCCTCTCCAG		57	15305094	15305112	CATCCTTGACAAACTTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3191	FBgn0023525	FBtr0070417	3	1	1	148	X	2145346	2145364	TACCAGTGCATGTTTGGAG		59	2145116	2145235	GGTAGAATGTCTGCGTAGTC		59	NA	
Drosophila melanogaster	50	CG14780	FBgn0025383	FBtr0070257	3	1	1	228	X	1366670	1366688	CCTTCAGGAGAATCAGCAG		59	1366939	1366957	CAGAACCACTACGAATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34433	FBgn0085462	FBtr0112734	2	1	1	60	3R	26475791	26475811	GCTCTTTCTGTTCTATACCCT		58	26475833	26475851	GATGTGATATCCCATGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14512	FBgn0039639	FBtr0085413	3	1	1	60	3R	24964036	24964054	AGAGCAGTACAATTTCCGG		59	24963994	24964013	TCCAATAATTAGGTCTGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33204	FBgn0053204	FBtr0089470	1	1	1	108	3R	24741129	24742159	TAGACGATCGAAGAGATCTG		58	24742230	24742248	GAGTATTTGTTCTCCAGCC		57	NA	Nonspecific
Drosophila melanogaster	50	CcapR	FBgn0039396	FBtr0084983	3	1	1	61	3R	21750438	21750458	CGAATCCACTAATCTATTGCC		58	21750306	21750415	CGGAAAGCGACTTAATGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31224	FBgn0051224	FBtr0083691	1	1	1	92	3R	14478940	14479022	GAGTGAGTCGGTTTATGGG		59	14478866	14478884	GGATAATAGTCCTGTCGCC		59	NA	
Drosophila melanogaster	50	sxe2	FBgn0038398	FBtr0083225	1	1	1	116	3R	11911739	11911757	GTACGATCTTTATACGCCC		57	11911837	11911921	TGAATGGAGACCCTAACTG		58	NA	
Drosophila melanogaster	50	pum	FBgn0003165	FBtr0081994	3	1	5	106	3R	4982876	4982894	TGGATTACATCACTGGCTG		59	4906735	4924427	GAAACAGTTGTTGATTGTGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG6897	FBgn0036800	FBtr0075108	2	1	1	66	3L	18616835	18616853	TAGAAACCTATGCGGACTG		58	18616883	18616901	AAGTTTCCTCTTTCCCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	exex	FBgn0041156	FBtr0076751	3	1	1	296	3L	7942377	7943260	CATGTCGAGATCAGAGTCG		59	7943520	7943673	TTATGACCCATGGGTATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4835	FBgn0035607	FBtr0077148	3	1	1	60	3L	5476259	5476277	AAAGACCACTACTACCGAG		57	5476301	5476319	AGCTGTAGTTGATTCTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nAcRbeta-64B	FBgn0000038	FBtr0073299	2	1	2	121	3L	4433347	4433365	TTGGTTTGGTACGACTACC		59	4433449	4433623	CCATCGGCATTATTGAAGAG		58	NA	
Drosophila melanogaster	50	CG12605	FBgn0035481	FBtr0073168	2	1	3	74	3L	3959966	3959985	ATAGTATTCAGCCCATGGAC		58	3959843	3959861	AAATCACCTTGCCATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DptB	FBgn0034407	FBtr0086621	2	1	1	70	2R	14754987	14755006	GCTTATCCCTATCCTGATCC		58	14755039	14755113	AAATTGGGAGCATATGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8303	FBgn0034143	FBtr0087119	3	1	1	130	2R	12484043	12484061	AAGTGCAAGGGCTATATCC		59	12483878	12483951	GTTCCATAAACAATCGATGGC		59	NA	
Drosophila melanogaster	50	CG8192	FBgn0034030	FBtr0087354	1	1	1	143	2R	11433074	11433092	CCTAAAGATCCAGGGACAG		58	11432885	11432969	GCATAGTATCCAGAGTTTCTG		57	NA	
Drosophila melanogaster	50	CG8738	FBgn0033321	FBtr0088705	2	1	1	105	2R	4584622	4585167	GATCAGATAGAGGAGGGTC		57	4585236	4585254	CATCCAGCTGGTAGTAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3107	FBgn0033005	FBtr0086078,FBtr0086077	3	2	3	125	2R	979866	979885	GTAGCGACATTTATGAATGC		57	979973	980041	CAGGTTTGGTCTGAATACG		58	NA	
Drosophila melanogaster	50	CG33552	FBgn0053552	FBtr0091522	3	1	1	61	2L	16682858	16682876	AAAGAAGATCGCCGAAGAG		59	16682899	16682919	CTCCGGTAACCTCATAATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sfmbt	FBgn0032475	FBtr0080492,FBtr0080491	1	2	2	109	2L	13172240	13172323	TCGGATTGGTTCTGTTACC		59	13172149	13172167	AATGTACGAGAGTCGTAGC		58	NA	
Drosophila melanogaster	50	Hand	FBgn0032209	FBtr0080073	1	1	1	92	2L	10294480	10294499	AGCACTGTTTGAAATCAGAG		58	10292795	10292813	GAATAAGTTCCGATGCCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ts	FBgn0024920	FBtr0077679	3	1	1	60	2L	2968691	2968709	ATCATTAAACGTCAGGTGC		58	2968649	2968668	CGACTATCTGAAAGTCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33923	FBgn0053923	FBtr0091927	1	1	1	81	2L	1341635	1341653	TTGCCCGTTACCTTTACAG		59	1341504	1341591	TCCACAATGATATCGTGGTC		59	NA	
Drosophila melanogaster	50	tRNA:K2:42Ad	FBgn0011890	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	su(f)	FBgn0003559	FBtr0113735,FBtr0113732,FBtr0113733	1	3	5	80	XHet	77307	77325	ACTATATCGCATTCGAGCA		58	77366	77445	CGTTCATGTAATCCTTAGATCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG17159	FBgn0039945	FBtr0113720,FBtr0113717,FBtr0113718,FBtr0113721,FBtr0113719	2	5	5	60	XHet	68536	68557	CAACTTCAGAATTGGATGAACC		59	68497	68516	AGTGTGGGTTCTATAGTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-1192a	FBgn0083001	FBtr0113566	3	1	1	61	X	17038542	17038560	GCTTGTAGACCAGATCGAG		59	17038499	17038517	TCGAAGCTCAATTCTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14617	FBgn0031191	FBtr0100652,FBtr0100651,FBtr0077352	2	3	5	128	X	21887458	21887783	GATTGCTTCAACAGCTCTG		59	21887874	21887893	GTTTGAGGAGTAGTTTGGTC		58	NA	
Drosophila melanogaster	50	CG14476	FBgn0027588	FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058	2	5	5	95	X	21472298	21472388	CCAGTAGATGATTTCAAGATCC		58	21472224	21472242	GTGCAACATCAAGGTTGAG		59	NA	
Drosophila melanogaster	50	CG14476	FBgn0027588	FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058	1	5	5	94	X	21472297	21472387	CAGTAGATGATTTCAAGATCCC		58	21472224	21472242	GTGCAACATCAAGGTTGAG		59	NA	
Drosophila melanogaster	50	CG1718	FBgn0031170	FBtr0077233	3	1	1	80	X	21167096	21167114	AATACGAGGATTTGGCTCG		59	21166970	21167053	GGATATAGTCCTCAAAGCCC		59	NA	
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0112569	3	1	5	126	X	20663759	20676866	GAGTAGATCATCGGTGTCTC		59	20663652	20663670	GGGATTTCCTACGTACTGC		59	NA	
Drosophila melanogaster	50	RhoGAP19D	FBgn0031118	FBtr0077320	3	1	1	106	X	20358539	20359364	TGCAGATGCACTATACGAG		59	20358451	20358469	AAATGTGGTCTTGTGGGAG		59	NA	
Drosophila melanogaster	50	inx6	FBgn0027107	FBtr0077339	1	1	1	60	X	20139923	20139941	ATGCTCACCAGGTATTTCC		59	20139881	20139899	ACTTGATCGAATAGCACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	D2R	FBgn0053517	FBtr0070034	3	1	5	82	X	19905588	19907143	GCACCTAAGGTAAATGGAG		57	19905524	19905544	GAAGTAGAGCATATCACATCC		57	NA	
Drosophila melanogaster	50	CrebB-17A	FBgn0014467	FBtr0074555,FBtr0074556,FBtr0074554,FBtr0112878	2	4	7	202	X	18269409	18269883	CTACAACACCAACAACAGC		59	18270049	18270067	GACAGTAGAGCTCCTTGAG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	wupA	FBgn0004028	FBtr0074520	1	1	7	83	X	18000953	18006603	GATGTTGAGATCAACGATCTC		58	18000825	18000843	TTTGGAGACCTTCTTCAGG		58	NA	
Drosophila melanogaster	50	Fim	FBgn0024238	FBtr0074443,FBtr0074441,FBtr0074442	3	3	3	118	X	17182048	17182066	ACTCAATCTAGCCTTCGTG		59	17181556	17181966	AATTGCGGTAGGTCTTCTC		59	NA	
Drosophila melanogaster	50	baz	FBgn0000163	FBtr0074388,FBtr0111000	1	2	2	80	X	17085682	17085701	GCAGATGCACTTAATGACTG		59	17085744	17085829	GGTAGTGTTGGAGACATCG		59	NA	
Drosophila melanogaster	50	Rrp45	FBgn0030789	FBtr0074355	2	1	1	267	X	16684012	16684032	GCAGTTGGATAATAACGAGAG		58	16683710	16683728	CTAGATGTATCGCTTGGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	if	FBgn0001250	FBtr0074357,FBtr0074358	1	2	2	82	X	16649915	16649936	CCATCAACATTCAGAAGAACTG		59	16649783	16649872	ATACTTGTCCACAGTGCTG		59	NA	
Drosophila melanogaster	50	CG34325	FBgn0085354	FBtr0112527	2	1	1	95	X	16608994	16609101	CTTCAAGTGCAAGAAATGC		57	16608917	16608935	ATTCTTTAATCGGAGCAGG		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	r	FBgn0003189	FBtr0089734,FBtr0089733	1	2	2	94	X	16554421	16554440	CTATGAGGCGTATCTCAAGG		59	16554496	16554580	CCATCTTGTGCTTGAAACTG		59	NA	
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	2	7	7	80	X	16269992	16270010	ATCACCATGTATCGAAGCG		59	16270054	16270134	TCCATTTCACCTCGTTCTC		59	NA	
Drosophila melanogaster	50	CG9917	FBgn0030740	FBtr0074237	1	1	1	60	X	16216932	16216952	CCATTTGGCTGGTTATATTCG		59	16216892	16216910	ATCTGATCCAGGTCTAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	disco	FBgn0000459	FBtr0100384,FBtr0074250	2	2	2	67	X	16107028	16107046	AGAAACGAGTACAGTGCTC		59	16106979	16106997	AAAGTGAATCTTAAGGGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nipsnap	FBgn0030724	FBtr0074258,FBtr0074257,FBtr0074259	1	3	3	277	X	15965372	15965390	TCTTAGCTTGATGCAGGAG		59	15964887	15965071	GCAGAGATTTGTAACACCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	mmd	FBgn0041109	FBtr0074156,FBtr0074155	3	2	2	95	X	15856479	15856581	AATTTGAATGCAAGGCGAC		59	15856402	15856420	TTAGATTATCACCGCACGG		59	NA	
Drosophila melanogaster	50	CycD	FBgn0010315	FBtr0074163,FBtr0074164,FBtr0074165	2	3	3	60	X	15801699	15801717	TCTGATGACCGATCTAACC		58	15801595	15801614	CATGTGCAGCATACAATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	2	9	9	111	X	15788791	15788877	GAGTTACCGAATATGGCGA		59	15788952	15788970	TTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	CG16952	FBgn0030701	FBtr0074115,FBtr0074114,FBtr0074116	3	3	3	80	X	15765546	15765902	CAATAGCACAGAAAGATCTGTC		59	15765943	15765961	TTTGGGAACTCCTTGAACC		59	NA	InUTR
Drosophila melanogaster	50	CG8974	FBgn0030693	FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186	1	5	5	210	X	15688455	15688537	GATCCACGTAACAAAGTTCC		58	15688199	15688217	GTTCATCCTCGTATTGCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Actr13E	FBgn0011741	FBtr0074203	1	1	1	60	X	15630814	15630834	GGGATTACATATTCAGCAAGG		58	15630774	15630793	ATGACAATATTGCGGTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9503	FBgn0030598	FBtr0073974	3	1	1	124	X	14815296	14815314	AGCTGTCCAAGATTGACTG		59	14815074	14815094	ATAGTTAAGAACAGAGCTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12539	FBgn0030586	FBtr0073987	1	1	1	60	X	14737114	14737132	ATTGCTAAAGCGAACTGTC		58	14737072	14737090	CCAATAATCATCCGAGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9413	FBgn0030574	FBtr0073943,FBtr0073944	1	2	2	90	X	14482757	14484290	GAACTATGATAGGGTCTGGA		57	14482686	14482705	GCAAGCCAGATTATAAAGCT		58	NA	
Drosophila melanogaster	50	CG11095	FBgn0030528	FBtr0073827	3	1	1	60	X	13706153	13706172	TATCCCTACTATACACCCGA		58	13706194	13706213	AAGGAGATCTGAAAGCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32652	FBgn0052652	FBtr0073671	3	1	1	89	X	12305612	12305686	GCTAGGATAGTTGAAATGGTG		58	12305543	12305562	TAAGCGCAACATTTGTATCC		58	NA	
Drosophila melanogaster	50	CG2061	FBgn0027498	FBtr0073429,FBtr0073430,FBtr0073431	2	3	3	60	X	10987593	10987614	CTATTGGCTAAACGATGTACTG		58	10987635	10987653	TATGGATACCAGGTCATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PPP4R2r	FBgn0030208	FBtr0071452,FBtr0071453,FBtr0071451	2	3	3	82	X	10374023	10374042	TAAGTTTATGCGTGCTTTGG		59	10374146	10374164	CATTCTCACTTTCGGTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG2972	FBgn0030177	FBtr0071430	1	1	1	60	X	9978470	9978491	TAAGTACAAGAATCAGAGCCTG		59	9978512	9978530	GATCGGATTTCTCGAATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	amx	FBgn0000077	FBtr0071331	3	1	1	61	X	9140509	9140527	CTATTCCGTACCAACTGCA		59	9140466	9140484	GTAAAGGATCGATTGCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297	2	4	6	118	X	9005030	9005125	CGAGCATGGATTTAATCCAG		58	9005449	9005467	GAATCTGTCGGATGAGGTC		59	NA	
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274	3	10	10	166	X	8768356	8768374	GAGGATGAGAACGAGAACG		59	8768131	8768227	TCTTGTTTCAGAGCCTTGAG		59	NA	
Drosophila melanogaster	50	CG11265	FBgn0030049	FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964	3	4	4	142	X	8459066	8459084	ATGATATCGGTCGAAGCAG		59	8459189	8459420	AATGATTCGACCCAGTATCG		59	NA	
Drosophila melanogaster	50	CG32711	FBgn0052711	FBtr0071248	1	1	1	142	X	8302474	8302564	AAGCAATGGCACAATACAC		59	8302287	8302305	TTAGAAGTCATCTGCACGT		58	NA	InUTR
Drosophila melanogaster	50	CG1575	FBgn0029999	FBtr0071151	3	1	1	63	X	8012147	8012165	CTAATGAGTCTGCTCTGGA		58	8012192	8012210	TTAGCTCCGTGGTATTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tom40	FBgn0016041	FBtr0071074,FBtr0071073	2	2	2	70	X	7632792	7632810	GTATCAGATCGATCTGCCC		59	7632945	7632963	CAAAGATTTGCCAGTTGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	RpL7A	FBgn0014026	FBtr0070915,FBtr0070916,FBtr0070917	1	3	3	84	X	6425868	6425886	CGATGTTGATCCTCTGGAG		59	6425399	6425417	CTTACCCTTCACAATGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3774	FBgn0029849	FBtr0070875	1	1	2	103	X	6114598	6115423	CCCTTCCAATATGGCTCTG		59	6115489	6115508	CGATTTGAATGATCAGCTCC		59	NA	InUTR
Drosophila melanogaster	50	rux	FBgn0003302	FBtr0070889	2	1	1	60	X	5930603	5930621	ACTCCCTGAAGTATGTGGA		59	5930561	5930581	CCGTAGATATGTTCATTACGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAP5A	FBgn0029778	FBtr0070785,FBtr0070784	1	2	2	228	X	5511348	5511366	TATCCCAGCTTTATGGCAG		59	5510964	5510984	GAGGAGAGCATAAAGATCTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG4165	FBgn0029763	FBtr0070774,FBtr0070772,FBtr0070773,FBtr0070775	3	4	4	81	X	5317036	5317156	TTAGAACACTACCAGACACC		58	5317200	5317218	ACTCATAGCACCAGATGTC		58	NA	
Drosophila melanogaster	50	ctp	FBgn0011760	FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704	1	4	4	184	X	4585720	4585738	AGTGAAGTTGTAAGCACAC		57	4592338	4592356	CTCCTTCTTGATGTAGGCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	rap	FBgn0003200	FBtr0070687,FBtr0070686	1	2	2	136	X	4568509	4568527	TACTGAAGAACGAGCTCCT		59	4563162	4568409	ATTGTAGTCCTGCTTGGTG		59	NA	
Drosophila melanogaster	50	CG12184	FBgn0025387	FBtr0070696	2	1	1	117	X	4522152	4522170	CAGATGATTCGCAATGCTC		59	4521996	4522071	TAACTCGAGTATTGGCTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG2875	FBgn0029672	FBtr0070586,FBtr0070587	3	2	2	67	X	3466638	3466656	CTTTCTCATGGACTCCCTC		59	3466527	3466546	TAAAGATTCCCTGAAGAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070511,FBtr0070514	2	13	14	81	X	3228354	3228595	CGTCGCTTAAGTTCAAACG		59	3228640	3228658	TCGGAAATCTGATTTCCCG		59	NA	
Drosophila melanogaster	50	CG3588	FBgn0025643	FBtr0070548,FBtr0100550,FBtr0070549,FBtr0070547	2	4	4	169	X	2816306	2816324	TTGAGTCCCTTGGAAAGAC		59	2816542	2816560	TTCTTCTTGTGTTGCTGAC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG13762	FBgn0040333	FBtr0070444	1	1	1	60	X	2516370	2516388	TTCTCAACATCCAGCTCAC		59	2516328	2516346	GGCCATTCAACATATTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Unc-76	FBgn0040395	FBtr0070376,FBtr0070377	2	2	2	83	X	1985850	1985868	ACTTGACCACAGTCATTCC		59	1985913	1986003	CCTTGAGAATCTTGATCAGGA		59	NA	
Drosophila melanogaster	50	arm	FBgn0000117	FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988	2	4	5	93	X	1787501	1787519	CAGAAGAAGCATATGAGGG		57	1786143	1787446	GTATCATATCCTTGCTGATGG		58	NA	
Drosophila melanogaster	50	CG32810	FBgn0025394	FBtr0070260	3	1	1	121	X	1408818	1408901	TAACCCAGATGATCTCAACG		59	1408985	1409003	ACACTCTTTGGATACCACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11412	FBgn0024362	FBtr0070208,FBtr0070209	3	2	3	228	X	1237464	1237482	GATATGCACATGAACGTGC		59	1237916	1237935	TAAGATAGTAGCGGAACAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11412	FBgn0024362	FBtr0070208,FBtr0070209	2	2	3	228	X	1237463	1237481	GGATATGCACATGAACGTG		58	1237916	1237934	AAGATAGTAGCGGAACAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3638	FBgn0026875	FBtr0070248,FBtr0070246,FBtr0070249,FBtr0070247	3	4	4	88	X	1117713	1117731	TTATTTGGCCTCCAGTGTG		59	1117575	1117661	CATAGGGACTTCTCATGCC		59	NA	
Drosophila melanogaster	50	fz3	FBgn0027343	FBtr0112928,FBtr0070138	3	2	2	60	X	676921	676939	GCATTTGTATACGAGTGGG		58	676961	676981	AGCATATAGAGGAGTGATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17896	FBgn0023537	FBtr0070093,FBtr0070092	3	2	2	60	X	385921	385939	AGGCAAGTACATTTACGAG		57	385879	385897	GCCCATATTAGATTGCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3777	FBgn0024989	FBtr0070066,FBtr0070068,FBtr0070067	2	3	3	128	X	241726	242117	ACAAGACTGGTAGAAATCGT		58	242208	242226	CAACCACTATACCCTCCTC		58	NA	
Drosophila melanogaster	50	ewg	FBgn0005427	FBtr0100577,FBtr0100579,FBtr0089441,FBtr0089442	1	4	8	172	X	165636	166462	ATGTTGATTACACCACGCA		59	165420	165438	AACGGTTTGAATGGTAGCA		59	NA	
Drosophila melanogaster	50	CR41585	FBgn0085806	FBtr0114260	1	1	1	60	U	7429711	7429730	CGTTCTTTATTCACGCACTG		59	7429751	7429771	GCGGTATTTCTACTGTTAGTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40561	FBgn0085744	FBtr0114194	3	1	1	258	U	7865244	7865262	TAGTAGTGCAAGCTAGCTG		58	7865004	7865027	CAGCTAGCTTACACTACTATATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41010	FBgn0085552	FBtr0113965	2	1	1	110	U	6449562	6449580	TTCGATATGCTCGAACTGG		59	6449470	6449488	AAATACTCGTCAATGACGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40609	FBgn0085501	FBtr0113913	3	1	2	284	U	5681829	5681847	CAAGAGATATCGTCGGTGG		59	5681471	5681489	TGCAACATTCAATTGCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40162	FBgn0058162	FBtr0113815	3	1	1	74	U	592685	592705	ATCCTAATCTCATTCGAGACG		59	588193	588211	CCAAATCGTTGTTAACGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40268	FBgn0058268	FBtr0113853	1	1	1	60	U	374512	374530	CAACGCTTCCAAGAAACTC		59	374470	374488	CTGTGTCTCCAAAGTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0100344,FBtr0100346,FBtr0100343,FBtr0089327	1	4	7	95	4	1129117	1129138	CCGTTAGTTCCTATTAGTATGC		58	1129194	1129748	GTCAAATGCTAGAGCTGTG		58	NA	
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	2	8	8	80	4	671647	672939	ACAGCACAGATTGATGGTC		59	671585	671604	GTTCAAATACGGGTGAAAGC		59	NA	
Drosophila melanogaster	50	Eph	FBgn0025936	FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086	3	4	5	110	4	640795	640889	GCTCAACAGATATCCAGGT		58	640961	640981	TATTATAGTGTCGAGTTGCCG		59	NA	
Drosophila melanogaster	50	Or98P	FBgn0067407	FBtr0085225	2	1	1	60	3R	23670833	23670852	AACCTATTGCTCAGGATCTC		58	23670875	23670893	ATGCCATACTCAAAGTAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Map205	FBgn0002645	FBtr0085876,FBtr0085875	2	2	2	60	3R	27893116	27893134	GCCTTTAGATCAGGAGGAG		58	27893074	27893092	CACTAACTGCTCTTGACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	krz	FBgn0040206	FBtr0085877	2	1	1	60	3R	27875115	27875134	GTCTAGCACTCTCATTACCA		58	27875074	27875093	ATAGTGGACCATAATACCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1544	FBgn0039827	FBtr0085755,FBtr0113311,FBtr0085756	3	3	3	88	3R	27027463	27027481	TAACCTATTGGGACACTGG		58	27027532	27027611	ATGGATGTTAAAGTCTTCGG		57	NA	
Drosophila melanogaster	50	Moca-cyp	FBgn0039581	FBtr0085286,FBtr0085287	3	2	2	119	3R	24168519	24168608	CGAGATACCAGAGGTATCGA		59	24168690	24168708	TCTCGATCCTGATCTTTGC		59	NA	InUTR
Drosophila melanogaster	50	Cpr97Eb	FBgn0039481	FBtr0085135	2	1	1	60	3R	22916122	22916143	CTATGGAAAGTACGGTTATGTG		58	22916083	22916102	GGCTCCATACTCTATTTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14250	FBgn0039448	FBtr0085049	1	1	1	87	3R	22518460	22518478	TTGGACTTTAGCTCAGCAC		59	22518391	22518409	TTGTGAGAGGAGTTACTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5024	FBgn0039373	FBtr0084902	3	1	1	60	3R	21637263	21637281	GGATCTGGCTTTATACACG		57	21637304	21637323	TTTCATCGCCATATTCAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CHKov1	FBgn0045761	FBtr0113353	3	1	5	159	3R	21149169	21153867	AAACTACATCCAACGGAGAG		59	21149029	21149047	AATTAAAGTCCAGGGCACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11844	FBgn0046214	FBtr0084775,FBtr0084777,FBtr0113354	2	3	4	85	3R	20949829	20950321	ATAGAACTGGCGTCAAGTC		59	20950370	20950388	TAAGTCCTCAATGTCCTGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CycB3	FBgn0015625	FBtr0084728	3	1	1	61	3R	20695891	20695910	TGGATGCTAAGAAACAGGAG		59	20695849	20695867	CGTAGTCATCTTACTGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7006	FBgn0039233	FBtr0084704	3	1	1	79	3R	20676464	20676482	AAGATCTTGTTCGAGCACC		59	20676576	20676594	CAATATGTTCCATCTGGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100632,FBtr0100636,FBtr0100637	3	3	17	93	3R	20521092	20521110	AGGACATTAAGGACGAGAC		58	20521838	20528849	CGATTGAGTACTAAGTCATCG		58	NA	
Drosophila melanogaster	50	CG31126	FBgn0051126	FBtr0084663	2	1	1	60	3R	20485387	20485405	TAAATTTCACTCTTCGCCG		58	20485429	20485447	GGTGTCAGTTGATTCAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31184	FBgn0051184	FBtr0084505	2	1	1	69	3R	19822377	19822395	AAGGTGTACGTAAAGATGC		57	19822488	19822506	TCAAATGCTGATCAAAGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Gdh	FBgn0001098	FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498	1	4	4	96	3R	19763339	19763461	AAGCTAAGATCATTGCCGA		59	19763261	19763279	TACAGATCGGGAATGACCA		59	NA	
Drosophila melanogaster	50	CG31145	FBgn0051145	FBtr0084480,FBtr0084479	2	2	2	85	3R	19440925	19441934	CAATACAGCATGTTGTGCA		59	19440858	19440879	CTTCATTAAGGCCTTGATATCG		58	NA	
Drosophila melanogaster	50	Gr94a	FBgn0041225	FBtr0084346	3	1	1	60	3R	18878199	18878217	GATTCTGTCGCTCATATGC		58	18878238	18878259	ATAGTACAGACTGTAGAAACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	p53	FBgn0039044	FBtr0084359,FBtr0084360	3	2	2	96	3R	18878870	18878891	CGATATCAAGGAGGATATTCCG		59	18878662	18878743	ATTCCCGGAGTTTAATCCC		59	NA	
Drosophila melanogaster	50	sar1	FBgn0038947	FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208	2	5	5	60	3R	18184317	18184335	TTCACTACATTCGACTTGG		57	18185255	18185273	GGAAGTAGTCCTTCCAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6028	FBgn0038924	FBtr0084186	3	1	2	117	3R	17850658	17850676	ATAATGTCATCGCTCATGC		58	17850488	17850506	CCGAAGACATAGTCCATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Eip93F	FBgn0013948	FBtr0112874,FBtr0084169	1	2	2	96	3R	17821415	17821433	CCCAACCACTGTAAGACAG		59	17821491	17821577	GTGATGTTTGGTTGTTCTCAG		59	NA	
Drosophila melanogaster	50	Cby	FBgn0067317	FBtr0084136	3	1	1	60	3R	17694053	17694072	TCTTCAACAAGAAGTTCGAG		57	17694095	17694113	CCTATATTGCAACGTCCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5180	FBgn0043457	FBtr0083903	2	1	1	153	3R	16384875	16384893	AGATCACCTCCCTAGACTC		59	16385074	16385092	AATGGCTGATAGTGATCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4936	FBgn0038768	FBtr0083831	2	1	1	128	3R	15859118	15859137	GTACAAATGCAGCTATTGCC		59	15859283	15859303	GTGTTGGTGTAAGTGAATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hs6st	FBgn0038755	FBtr0083846	3	1	1	114	3R	15763057	15763075	CTGTCCAGAATCTTCGACC		59	15756240	15762979	TTCAGATGTTCGAAACGCT		59	NA	
Drosophila melanogaster	50	CG6231	FBgn0038720	FBtr0083810,FBtr0083809,FBtr0083807,FBtr0083808	1	4	4	80	3R	15444855	15444873	CGACTTTAATCGCTACCAG		57	15444732	15444811	TGCGTAAAGTAATGCATCG		58	NA	
Drosophila melanogaster	50	Dys	FBgn0024242	FBtr0110919	1	1	8	153	3R	15419676	15419694	CAAAGGAGCATGATGACAG		58	15419810	15420230	TTGAGTTCTCATTCAAGTGC		58	NA	
Drosophila melanogaster	50	PKD	FBgn0038603	FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592	2	4	4	196	3R	14131625	14132352	AGCAGCTCACTGAATATCC		59	14131447	14131465	GTATTGTACTGGCAGTCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7993	FBgn0038585	FBtr0083562	3	1	1	297	3R	14049825	14049911	ATCTCTGGAGTTCTTGACC		58	14050172	14050190	GATCGAATCCACCTTCTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33333	FBgn0053333	FBtr0083441	3	1	1	266	3R	13243369	13243387	CTTACGGTCAAGACCAAGG		59	13243615	13243635	CATGGTACACATTTCCTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34279	FBgn0085308	FBtr0112474,FBtr0112475	1	2	2	156	3R	13228764	13228843	TTTACCCTGAGTATTCCCA		57	13228448	13228645	TTATGCGATAATCCTTCTGG		57	NA	
Drosophila melanogaster	50	CG14879	FBgn0038419	FBtr0083326	3	1	2	177	3R	12172999	12173110	TGAACATCTTCGACGAGTC		59	12172840	12172858	TTGACCTTCTGTACATCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6171	FBgn0026737	FBtr0112926,FBtr0083113	1	2	2	60	3R	11189173	11189192	CCACTAATAGCAATGCACAG		58	11189132	11189153	CTAATACTGCTTGAAGATACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	1	8	8	283	3R	9504401	9504476	ACACGACGTAAATCAGGAG		59	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	beat-Va	FBgn0038087	FBtr0082688	1	1	1	70	3R	8669191	8669209	CTAAACTCGGTCAAATGGT		57	8669081	8669099	TAAATCGGACTCGTCAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6950	FBgn0037955	FBtr0082522,FBtr0082519,FBtr0082520	2	3	4	116	3R	7647072	7647092	CGAGGTGATCATTATTGAACC		58	7646917	7646935	GAGCTTATTGGTCCCTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6950	FBgn0037955	FBtr0082522,FBtr0082519,FBtr0082520	1	3	4	114	3R	7647072	7647092	CGAGGTGATCATTATTGAACC		58	7646919	7646937	GCTTATTGGTCCCTCTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6950	FBgn0037955	FBtr0082521,FBtr0082522,FBtr0082519,FBtr0082520	1	4	4	60	3R	7646915	7646933	GAGGGACCAATAAGCTCTG		59	7646873	7646891	TGAACAGACTCTCGAACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14718	FBgn0037939	FBtr0082426	3	1	1	60	3R	7526914	7526934	AGAGCTGAATGGAGATATAGG		58	7526956	7526974	ATTAACCTCCTCTGCAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4089	FBgn0037838	FBtr0082281	1	1	1	60	3R	6642365	6642384	CACTTACATCAACAAGTGGC		59	6642461	6642481	TTATCGGTTGTGATCATCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Syn	FBgn0004575	FBtr0089476,FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471	1	5	5	80	3R	6041341	6042793	GGTGGATGAGATATCCGAG		58	6042837	6042855	TACTCTCGTCCATCTTTGG		58	NA	
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190	1	8	8	80	3R	5954403	5954421	CTCCAGGGATTACTTGAGC		59	5954227	5954361	TATTCATGAACCGGATAGGTC		59	NA	
Drosophila melanogaster	50	CG3940	FBgn0037788	FBtr0082179	2	1	1	91	3R	5938525	5943340	CTCCTTAATAGTCTGCTGCTC		59	5943393	5944014	TTGGAAATGGCTCATCCTG		59	NA	
Drosophila melanogaster	50	CG16904	FBgn0037763	FBtr0082154	1	1	1	60	3R	5641958	5641976	GCATGTACACCTATTTCCA		57	5641916	5641936	CTTATGACATAGATGACACCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nmdyn-D7	FBgn0028997	FBtr0082083	2	1	1	95	3R	5506303	5506321	ATAAACCAGGGCATGATGG		59	5506378	5506448	CATAAGGACTGAAGAGGAGAC		59	NA	
Drosophila melanogaster	50	CG8176	FBgn0037702	FBtr0082064,FBtr0082065	1	2	4	104	3R	5348603	5349931	TAGCAATCAAGTCTCTGGC		59	5349999	5350017	TCTTCCTGTATGTTCTCGG		58	NA	
Drosophila melanogaster	50	hyx	FBgn0037657	FBtr0081968	1	1	1	133	3R	4866926	4866944	CTCATTACCATGCTCAACG		58	4867200	4867218	GACACAGTCTGATTGTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8136	FBgn0037616	FBtr0081909,FBtr0081910,FBtr0081908	1	3	3	60	3R	4547570	4547588	GTGCATTGGGCATAATGTC		59	4547611	4547630	GACGATTGATGGGAATTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mkk4	FBgn0024326	FBtr0081892	3	1	1	68	3R	4474698	4474716	TTCCAAAGAGTTTGTGGAC		57	4474583	4474601	CTATACTTGGGTCGATCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7549	FBgn0037559	FBtr0110951	3	1	3	110	3R	4083121	4083139	TTTATCGTCCGATTTCGGT		59	4083213	4084122	AGACTGAAACCTAAACCGA		58	NA	
Drosophila melanogaster	50	DNApol-iota	FBgn0037554	FBtr0081798,FBtr0081797	1	2	2	198	3R	4060898	4060916	ATGTGGAGGAAAGGTTTCG		59	4061142	4061160	CTCACACCAGTTTCTCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	alpha-Est8	FBgn0015576	FBtr0081553	3	1	1	103	3R	3335992	3336256	GTACAGCGATCTCTTCTCG		59	3335907	3335925	ATCGGTACAGGAATGTTGG		59	NA	
Drosophila melanogaster	50	nxf4	FBgn0051501	FBtr0081583	3	1	1	60	3R	3172627	3172645	GACTTCAAATTCGAGTCCA		57	3172666	3172687	GATACCATCCATAGATACTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rn	FBgn0003263	FBtr0081593	2	1	2	150	3R	3121509	3121527	CATGCCAAAGACATAAGCG		59	3118152	3120143	GAAAGTGACCTTTCTGCAG		58	NA	
Drosophila melanogaster	50	Edg84A	FBgn0000552	FBtr0081688	2	1	1	60	3R	2510383	2510401	ATTCTCATCCGCAGTACTC		58	2510424	2510443	TTAACATCTCCTGTCTCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31286	FBgn0051286	FBtr0081682,FBtr0081683	3	2	2	96	3R	2467279	2467353	TATGCTTGGAAACTGTCCA		58	2467411	2467431	CCCTCTTTACTTCAAATCTGC		58	NA	
Drosophila melanogaster	50	CG1249	FBgn0037434	FBtr0081737	2	1	1	94	3R	2171142	2171160	AAACGTGAAGGAGATGTGG		59	2171066	2171085	ACATCTTCGATATGAACCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cas	FBgn0004878	FBtr0078725	3	1	1	222	3R	1540443	1540461	CTGTCCCAAGGTGTATGTG		59	1540169	1540257	TTTGTGCTTGTCCATATCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14673	FBgn0037352	FBtr0078738	2	1	1	60	3R	1452327	1452346	CTAACATGGAGTTCTGTCCA		59	1452286	1452304	AATTTCCTCTCGAAGCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	exba	FBgn0037346	FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745	3	7	7	85	3R	1423978	1423999	GGTTCTATTATTCGTAAAGGGC		58	1423648	1423932	CAGAACCGTTGACTAACCA		59	NA	
Drosophila melanogaster	50	Rheb	FBgn0041191	FBtr0078693,FBtr0078694	3	2	2	93	3R	1395422	1395440	GTGTACTCGATAACCAGCC		59	1395495	1395574	CCACAGGTACATATTTCTTGC		59	NA	
Drosophila melanogaster	50	CG31523	FBgn0051523	FBtr0078938,FBtr0078935,FBtr0078936,FBtr0078937	2	4	4	92	3R	293416	293434	TTCTACTACATGATCGCCG		58	293283	293361	CACGAATTGAACCATTTGGA		59	NA	
Drosophila melanogaster	50	CG14642	FBgn0037222	FBtr0089687,FBtr0089688	1	2	2	160	3R	67638	67714	TACATCCATATACGAGGCG		58	67496	67514	TAAGTAGGGCTATGTCGTC		57	NA	
Drosophila melanogaster	50	aux	FBgn0037218	FBtr0078965,FBtr0078966	3	2	2	143	3R	52283	52301	TTCTCTGCTCTATGCACAC		59	52405	52485	CTGTTCCATTATGCTTATCAGG		58	NA	
Drosophila melanogaster	50	CG40053	FBgn0058053	FBtr0111154	2	1	1	106	3L	24003641	24003662	CACCATAAAGCTGTTATTGAGG		59	24003556	24003574	ATTTCCTATCGATCGACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mub	FBgn0014362	FBtr0078469,FBtr0078468,FBtr0078470	3	3	4	155	3L	21914290	21914308	CGAGATTCGCCAAATATCC		58	21914425	21918297	GCAGTCTCCATTGATATTCTC		58	NA	
Drosophila melanogaster	50	CG6049	FBgn0037081	FBtr0078400,FBtr0078399,FBtr0078398	3	3	3	80	3L	21414145	21414214	ATCTATGATCGCCATCCTG		58	21414083	21414103	CATCATTTGAATGACGAGGTC		59	NA	
Drosophila melanogaster	50	CG4289	FBgn0037020	FBtr0078251	3	1	1	95	3L	20772496	20772788	CTTCTGGAAGCAATACATTGC		59	20772841	20772863	GTCTCTACCTTCTTGTCTATGTC		59	NA	
Drosophila melanogaster	50	gogo	FBgn0052227	FBtr0074848	1	1	1	80	3L	20264893	20266095	CTAATACAGGTGGATGGTGAG		59	20264833	20264851	CTTTATGTACTGGGTGGCA		59	NA	
Drosophila melanogaster	50	grim	FBgn0015946	FBtr0075130	1	1	1	70	3L	18296909	18296927	GATCTTCTGCTACGCTCTG		59	18296857	18296875	ATATCTGAATGACCGTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32185	FBgn0052185	FBtr0075174	1	1	1	60	3L	17488008	17488027	GAATACTGATCCTCGTGTCC		59	17488050	17488068	TATGGTTGACGATAGGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	1	8	8	118	3L	16956803	16956821	AAGACCCATTGAAGGTAGC		59	16956901	16956979	CAATAGACCCTTGTGAATCAC		58	NA	
Drosophila melanogaster	50	CG11905	FBgn0036678	FBtr0075304,FBtr0075301,FBtr0113173	2	3	10	209	3L	16926458	16928309	AATGCGCTTTCTTGTTCTC		59	16923956	16923974	GGTTGATAGGCTCCATAGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG32154	FBgn0052154	FBtr0075460	3	1	1	60	3L	16232078	16232097	TTGGAATCCTATGGTCTAGC		58	16232119	16232138	CTGAAGTGTCCTTCTGAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5235	FBgn0036565	FBtr0075497	2	1	1	60	3L	16082500	16082518	GAGGAATGTTGTTCACCAC		58	16082458	16082479	GGATCCAGAGTATATCTTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dcp2	FBgn0036534	FBtr0075540	2	1	4	86	3L	15815230	15815248	GGTACTGTATCCTCGAAGC		59	15815106	15815181	GACAATCTGCTTCTCATTGC		59	NA	
Drosophila melanogaster	50	CG7255	FBgn0036493	FBtr0110880	1	1	3	96	3L	15301926	15304066	ATGATTGTGGGACTTTCCA		58	15304126	15304144	TGTATTTGAGCTTCTGCCA		59	NA	
Drosophila melanogaster	50	CG6859	FBgn0036484	FBtr0075640	3	1	1	60	3L	15138845	15138863	AACTTGCTGAACATCAACC		58	15138886	15138905	CACTGATGATAGGAATGAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13467	FBgn0036455	FBtr0075696	3	1	1	60	3L	14897941	14897959	TTCTCGATAAGATCTCGCC		58	14897982	14898001	ATGGAGAACACATATCGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trl	FBgn0013263	FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704	3	8	9	237	3L	14747639	14750011	TGCTAAAGAATACACCATGC		58	14747421	14747439	TGTTGTGGAATCATGTGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	bbg	FBgn0036425	FBtr0075726	2	1	1	60	3L	14504428	14504447	GGACGAAGATAAACTACCCA		58	14504387	14504408	ATCCTTATCATTCTCCTGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fz	FBgn0001085	FBtr0075743	1	1	2	93	3L	14310429	14359857	AAGTTGAAGGTGACATCCT		58	14359914	14359932	TAAATGCAGAGTGGAAGGA		58	NA	Nonspecific
Drosophila melanogaster	50	CG13738	FBgn0036390	FBtr0075790	1	1	1	67	3L	13966341	13966359	TTTACCAGGTGGTCTACTG		58	13966292	13966310	ATTTCTCACGGTGTTCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11006	FBgn0027534	FBtr0075927,FBtr0075929,FBtr0114506,FBtr0075928	2	4	4	85	3L	12803756	12803840	TGATGAAGATCGATGAGAAGG		59	12803887	12803905	CAATGATAGAACGCCTGTG		58	NA	
Drosophila melanogaster	50	CG10654	FBgn0036294	FBtr0075971	3	1	1	60	3L	12499562	12499582	AGTCTACGTAATAGAGGACGA		59	12499522	12499540	AATGGATAGCTTCTCCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5946	FBgn0036211	FBtr0076079,FBtr0076078	1	2	4	106	3L	11811263	11811281	AAGGACATTCTACTGCGTG		59	11810404	11811193	CTATACTGCCAACCTTCGT		59	NA	
Drosophila melanogaster	50	CG7573	FBgn0036153	FBtr0076170,FBtr0076171	2	2	2	102	3L	11305503	11305522	CTTGTTGGGTTTGATTTGTG		58	11305639	11305660	CTCGCTTAACATATGAATAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6199	FBgn0036147	FBtr0076187,FBtr0076188	3	2	2	82	3L	11195966	11196054	TTAGACTTGGAAGAGACAAACC		59	11195905	11195923	AGAAACTGGTCGAAGAAGG		59	NA	
Drosophila melanogaster	50	JIL-1	FBgn0020412	FBtr0076236,FBtr0076237	3	2	2	81	3L	11075164	11075183	CCGGAGAACATAATGTTCGA		59	11075042	11075121	AGCGATTATTGTAACATGCG		59	NA	
Drosophila melanogaster	50	nudE	FBgn0036059	FBtr0113158,FBtr0113159	1	2	4	95	3L	9894108	9894450	TTCGCTTAAGAATCCCGAG		59	9894509	9894527	TTTCTTAACATGTCGGCCA		59	NA	
Drosophila melanogaster	50	vsg	FBgn0045823	FBtr0076398,FBtr0076400,FBtr0076399,FBtr0076401	3	4	4	78	3L	9709210	9709228	ATGGATCCTCGTTCATTGG		59	9709270	9709288	TTGTAGAACTTGTAGGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5021	FBgn0035944	FBtr0076514,FBtr0076513	3	2	2	142	3L	8960603	8960685	TTGAGTCAAAGAACAGTCG		57	8960791	8960809	GATCATTACCAGCAGTAGC		57	NA	
Drosophila melanogaster	50	CG7546	FBgn0035793	FBtr0076791	2	1	2	138	3L	7506481	7506629	GTCTCGAAATGGATCACGA		59	7506927	7506945	ATAATTCGGGCCATTTCCA		59	NA	
Drosophila melanogaster	50	CG8539	FBgn0035791	FBtr0076831	2	1	1	60	3L	7490752	7490771	TCCTTTGTGTTCGAGATGTC		59	7490711	7490731	GAGGAAAGAACTTGTACTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lark	FBgn0011640	FBtr0076842,FBtr0076843,FBtr0076845,FBtr0076841,FBtr0076844	2	5	5	100	3L	7334146	7334165	ATACGACACTATGTTCAGCC		59	7334466	7334484	TAAAGTCCTCGTAACCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr65Ec	FBgn0035737	FBtr0076909	1	1	1	62	3L	7086536	7086554	GACTCGCGAGTATAAGAGC		59	7086580	7086598	GACGTCTGGTACTGATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13711	FBgn0035572	FBtr0073347	2	1	1	60	3L	4758214	4758232	GGCCAAGTACTTTATCACC		57	4758253	4758274	GTATCCTTTCAAATTCCGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DopEcR	FBgn0035538	FBtr0100186	1	1	3	179	3L	4379568	4380292	GAAACGCCAAAGAGTTAGC		59	4371891	4379425	CTAATTGTGCGCATCTGAG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG10863	FBgn0027552	FBtr0073171	2	1	1	83	3L	3941428	3941446	ATCTATGATGCCAAGGTGC		59	3941296	3941384	AATCTCAATCAGATATCGGAGC		59	NA	
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	3	9	15	80	3L	3083795	3084813	CTCGCCACTTATATGAATCGA		59	3084852	3084873	CAAATTAAGTAGTGAGAACCCG		59	NA	
Drosophila melanogaster	50	Jafrac2	FBgn0040308	FBtr0072982,FBtr0072983	3	2	2	93	3L	3043306	3043327	CGTGGTTAATAAGGAGATTGTG		59	3043380	3043450	TACAAAGGTGAAGTCCAGTG		59	NA	
Drosophila melanogaster	50	CG1240	FBgn0035370	FBtr0072969	1	1	1	101	3L	2767839	2767857	AAGTCGTGAAGAAGGTGTG		59	2767922	2767940	TCATCACCTTCATCAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1244	FBgn0035357	FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933	1	6	6	88	3L	2640260	2640344	CACAAAGTGAAGATTCACCC		59	2640395	2640413	CCCTGATCCGTAAAGAACC		59	NA	
Drosophila melanogaster	50	CG33232	FBgn0035347	FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920	2	4	4	87	3L	2495884	2495902	ACATTAGCTCCGAGTACAC		58	2495951	2496030	GCATTATGACCATATGACTCC		58	NA	
Drosophila melanogaster	50	CG7974	FBgn0035254	FBtr0072763	2	1	1	139	3L	1665905	1665923	AAGATCCGCAACATAGAGG		59	1666025	1666099	TCGATGTTGAATCGATTGTG		58	NA	
Drosophila melanogaster	50	CG2199	FBgn0035213	FBtr0072721	2	1	2	173	3L	1342375	1342393	GAATGCGCAATATACTGCT		58	1341852	1341936	ATGATGGGATGCTTCTGTG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	Glut1	FBgn0025593	FBtr0112911,FBtr0072617,FBtr0072616,FBtr0112909	1	4	6	80	3L	982229	982247	CTGCATCTCTATGGTCTGG		59	982289	983866	GTCGATCATTTCCTTGATCAG		58	NA	
Drosophila melanogaster	50	CkIIalpha-i3	FBgn0025676	FBtr0072604,FBtr0072603	1	2	2	80	3L	709131	709151	GGTGAATTTACCGATGAAGAG		58	709015	709091	TTCAACAGTCTCCTTGATCTC		59	NA	
Drosophila melanogaster	50	DIP2	FBgn0024806	FBtr0072520	2	1	1	82	3L	254628	254706	AGTGTTATGGGTGTCACTG		59	254564	254582	CCTTCGGTATAATGGCAGG		59	NA	
Drosophila melanogaster	50	E(bx)	FBgn0000541	FBtr0072522,FBtr0072523,FBtr0072521	3	3	3	88	3L	245466	245936	GAAGGAAAGGGTACGAGTC		59	245396	245417	CAGCATATCATCCTCATTATCG		58	NA	
Drosophila melanogaster	50	Zfrp8	FBgn0021875	FBtr0072253	3	1	1	107	2R	20021866	20021884	AATTTCACAGTCCTCAGGT		58	20022009	20022027	TTTCTTTAGGCAGGGAACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13569	FBgn0034979	FBtr0072284	2	1	2	126	2R	20013242	20013261	TCCTATGTCTACAAGACTGG		57	20013078	20013153	AACTACGCTCTTACTCCAG		58	NA	InUTR
Drosophila melanogaster	50	CG3907	FBgn0034958	FBtr0072195,FBtr0072196	2	2	2	97	2R	19908023	19908097	GAGAAAGAGATAACGCTGG		57	19907944	19907963	TTAATATTGCCCATGCTCTG		58	NA	
Drosophila melanogaster	50	CG4797	FBgn0034909	FBtr0072240,FBtr0072239	3	2	2	65	2R	19702155	19702173	ATGGATAACAACTCCACGG		59	19702046	19702126	ATGGACACTTGCTATCCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11299	FBgn0034897	FBtr0113114,FBtr0113113,FBtr0072087	2	3	3	112	2R	19619397	19619415	ATTTACCAGGACTTTGCCC		59	19619491	19619574	ACATCGTTGTACAATCCGT		59	NA	
Drosophila melanogaster	50	CG4091	FBgn0034894	FBtr0072096,FBtr0072097	3	2	3	114	2R	19587892	19587911	GATTGTGATCAAGATCGGTG		58	19587740	19587758	TGATATGATGGACAGCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pde8	FBgn0034886	FBtr0072074,FBtr0072077,FBtr0072075,FBtr0072076	3	4	5	103	2R	19562499	19562638	CGTTAATAGATGCGTAGCG		58	19562705	19562723	GAGTGGACATGACATTGTG		58	NA	
Drosophila melanogaster	50	CG4019	FBgn0034885	FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103	3	4	4	214	2R	19495764	19495783	ATCGAGTTCGTAATCACCTC		59	19495489	19495507	TAGATCCAGTTGCTCTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3906	FBgn0034871	FBtr0072121	3	1	1	68	2R	19399612	19399630	GAATCAGAGGAATGGTGTC		57	19399562	19399580	GTGATCGGTTCTATTCGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF2B-delta	FBgn0034858	FBtr0072014,FBtr0072015,FBtr0072013	3	3	3	88	2R	19276380	19276398	TGAGCTACGACATTACTCC		58	19276450	19276468	GAGTATGACGGGAACACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9849	FBgn0034803	FBtr0071951	2	1	1	160	2R	18825595	18825614	CGCTAGTGATTACAGATCCC		59	18826066	18826085	GTACTCAGTGATGATTGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Oatp58Da	FBgn0050277	FBtr0071779	3	1	1	86	2R	18107960	18107978	ATCAGTACCATGCTAACGG		59	18107839	18107910	GGTAAGCAACCCTATACCC		59	NA	
Drosophila melanogaster	50	CG6393	FBgn0034685	FBtr0071752,FBtr0071751,FBtr0071753,FBtr0071750	3	4	4	117	2R	17956299	17956317	GTACATCCTTCCCTTCGAG		59	17956398	17956416	GTTAAACATCACGATCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9284	FBgn0046297	FBtr0071717,FBtr0071718	2	2	2	84	2R	17691237	17691255	TAAGTCCTTGTCATCTGGC		58	17691303	17691321	ATAGCCTTATGTCCTCTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18735	FBgn0042098	FBtr0071744	2	1	1	60	2R	17686279	17686298	TAAATGGCTTCTACCATCGT		58	17686238	17686258	CTATCCTGACGATTATGCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34204	FBgn0085233	FBtr0112397	2	1	1	61	2R	17684054	17684072	GCTGTACGTCTAGTAGAGG		58	17684095	17684115	CCAATGCATGTAATTAGACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089710,FBtr0089703	3	2	9	181	2R	17399388	17399406	ATATCACAGGTTCGCTCTC		58	17399675	17399908	GAAGTACTTGACGTAGCCC		59	NA	
Drosophila melanogaster	50	Fkbp13	FBgn0010470	FBtr0071702,FBtr0071703	2	2	2	70	2R	17375559	17375578	CAATGTGTTCAAGGAGATCG		58	17375335	17375526	TTAGATACTCGCTGACCTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	dpr	FBgn0040726	FBtr0086238	2	1	1	81	2R	16621942	16633294	CTTCAACGTAGTGGAACTC		57	16633338	16633357	TGTTAGGTTTATGTCACTGC		57	NA	
Drosophila melanogaster	50	exu	FBgn0000615	FBtr0086243,FBtr0086242,FBtr0086244	1	3	3	133	2R	16557493	16557511	TATGCTGAAGTCGATGCAG		59	16557295	16557313	AGATAAGCACAATCCCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8929	FBgn0034504	FBtr0086284	2	1	3	95	2R	16215632	16215844	CATAACAGATCCCTCATTACC		57	16215901	16215919	TTGTCCCAATAATCGTTGG		57	NA	
Drosophila melanogaster	50	hpo	FBgn0034453	FBtr0086500	3	1	1	60	2R	15383189	15383207	GTTTATGGAGGATCCAGGT		58	15383147	15383166	TGAGCTCTGTTGGTATTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0086456,FBtr0086451,FBtr0100392,FBtr0086457,FBtr0086454	1	14	15	80	2R	15359174	15359192	GTTTGAGGAGGACGAACTC		59	15359236	15360336	GCGACTAGAGCTTCTATCC		59	NA	
Drosophila melanogaster	50	Topors	FBgn0034410	FBtr0086570	1	1	1	104	2R	14861660	14861681	CGTTATGTGTACGATAGAAAGC		59	14861746	14861831	CTGAGCAGGATTGTTTCTG		58	NA	
Drosophila melanogaster	50	CG5323	FBgn0034362	FBtr0086706	2	1	1	108	2R	14502923	14502942	CTACGTTCAACACGAATTGG		59	14503110	14503128	CTGATCCTCATTGGGACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5726	FBgn0034313	FBtr0086772	3	1	1	142	2R	14065181	14065199	ATAACTCTGCTTCACTCGG		59	14064542	14064560	CATGGATGGATACTGGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dgp-1	FBgn0027836	FBtr0086774,FBtr0086773	1	2	2	187	2R	14058156	14058237	CTTTATGGAAATAAGGGTTGCC		59	14057990	14058008	CATCAAAGCCGAGAATGTC		58	NA	
Drosophila melanogaster	50	rdgBbeta	FBgn0027872	FBtr0086888	1	1	1	80	2R	13585371	13585392	CCGAGTCTTCTATGTGATAGAG		59	13584361	13584436	TTGGGTATAAAGGAACACGT		58	NA	
Drosophila melanogaster	50	CG4847	FBgn0034229	FBtr0086937,FBtr0086934,FBtr0086933	2	3	5	198	2R	13400213	13400291	ACTTCTTGAGCCAATCTGG		59	13400453	13400471	TTCAGACCGGTCAATTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4827	FBgn0034225	FBtr0086926	2	1	1	98	2R	13367686	13367704	GACACCTATACCGGAACTG		59	13367766	13367848	GTTGCCCAGAGAAATAGCA		59	NA	
Drosophila melanogaster	50	CG18467	FBgn0034218	FBtr0086918	1	1	1	102	2R	13329030	13329048	ATAGACCATCCACTTCGTG		58	13329113	13329187	TGATATCCCTCTGTAACCAG		57	NA	
Drosophila melanogaster	50	Ark	FBgn0024252	FBtr0086968,FBtr0086967	1	2	2	91	2R	12909216	12909234	GGATGTACATCGAGCAGAG		59	12909289	12909428	TAGCTTCAGATACGGTTGC		59	NA	
Drosophila melanogaster	50	CG9001	FBgn0034175	FBtr0087060	2	1	1	60	2R	12887577	12887596	ACATTTCTGGGATGATCCAC		59	12887536	12887554	GTCCAGAACCAAGAAAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mlf	FBgn0034051	FBtr0087292	3	1	4	93	2R	11826016	11826034	GACTGTGTAATCCAGGAGC		59	11824075	11825959	GTGGATGTATGCTGTTCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Hr51	FBgn0034012	FBtr0114456	2	1	1	141	2R	11225706	11225912	GACAATGATGACGACTCCA		59	11226016	11226035	TTGTCTCGTAAACTGTTTCG		58	NA	
Drosophila melanogaster	50	igl	FBgn0013467	FBtr0087361,FBtr0087362	1	2	2	83	2R	11068182	11068200	GAGCTAGAGGCTGAATTCG		59	11076292	11076310	CAAATGACCACGGAAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	tra2	FBgn0003742	FBtr0089617,FBtr0089620,FBtr0089615,FBtr0089619,FBtr0089616,FBtr0089621	3	6	7	143	2R	10490376	10490678	GATTGACGCACAAACACAG		59	10490251	10490272	CGTTGGGTTATAGAGAAATCGA		59	NA	
Drosophila melanogaster	50	Asx	FBgn0000142	FBtr0100154,FBtr0087493	1	2	2	80	2R	10395746	10395764	CATATCCAGGATGTCGTCC		59	10395808	10395899	CTGGCCGATATCATTTCCA		59	NA	
Drosophila melanogaster	50	cg	FBgn0000289	FBtr0087527	1	1	7	131	2R	10064860	10064878	ATCTTACGCAAGAGGAGTG		59	10064973	10065374	GTATGTCACTTGGTGTCCC		59	NA	
Drosophila melanogaster	50	shot	FBgn0013733	FBtr0087619,FBtr0087617,FBtr0087616,FBtr0087621	3	4	6	81	2R	9787943	9788949	AACTAGATAAACTGCTCGGA		58	9787881	9787899	CGTATAAGTCGTCCTCCAG		58	NA	
Drosophila melanogaster	50	CG13335	FBgn0033857	FBtr0087680,FBtr0087679	1	2	2	60	2R	9459378	9459396	GGCTGATAATCGCATTAGG		58	9459336	9459355	GGTAATAGAGTACACCTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8830	FBgn0033738	FBtr0087950	1	1	2	126	2R	8322072	8322090	AACATCGAGAAGCTGTTCC		59	8321899	8321982	TCCTTGGCAAGATCTTGTG		59	NA	
Drosophila melanogaster	50	CG30049	FBgn0050049	FBtr0087906	1	1	1	80	2R	8246241	8246315	CATCGAGTTCGTGAAATCC		58	8246358	8246377	TCCTGGTTTACGTAATGTCC		59	NA	
Drosophila melanogaster	50	sha	FBgn0003382	FBtr0088120	3	1	1	136	2R	7219336	7219419	AAATATGCCCACAATGTCC		58	7219518	7219537	ACATAGATGAGACCCAAGAG		58	NA	
Drosophila melanogaster	50	Cpr47Eg	FBgn0086519	FBtr0088183	2	1	1	89	2R	7165684	7165702	CAGAAGGGTGACCTTAACG		59	7165613	7165631	ATATTGGATGGACACTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13231	FBgn0033580	FBtr0088203	3	1	1	267	2R	7033873	7034025	ATGAAATTCACTCTGCTGCT		59	7034255	7034273	GATAGGACACCGAAGACAC		59	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7722	FBgn0033574	FBtr0088211	2	1	1	86	2R	6828030	6828048	GTTACTGAATTTGGGTGCG		59	6827894	6827912	CTTGAAGAACTTGCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18004	FBgn0033566	FBtr0089727	2	1	3	81	2R	6773587	6773605	CTATTGAGTCCGGAATGCA		59	6773647	6773668	CAACTTATTACCACTTAGAGGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	3	9	9	68	2R	5738998	5739016	CTTTGAGTTGAATGGCCAG		59	5738880	5738966	ACATGGATCTCCTTAACGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	3	9	9	68	2R	5738998	5739016	CTTTGAGTTGAATGGCCAG		59	5738880	5738966	ACATGGATCTCCTTAACGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1623	FBgn0033448	FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487	2	4	4	70	2R	5716116	5716134	TGAACTACGAACCCAAGAC		59	5716064	5716082	ATCCGGATACTTGTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1623	FBgn0033448	FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487	1	4	4	69	2R	5716115	5716133	GAACTACGAACCCAAGACC		59	5716064	5716082	ATCCGGATACTTGTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Not1	FBgn0085436	FBtr0112673	1	1	3	109	2R	5457800	5457818	AAACTTTAACTCGAGCAGC		58	5457646	5457727	CATCTGTATCGCATGAGTG		58	NA	
Drosophila melanogaster	50	Ggamma1	FBgn0004921	FBtr0088645,FBtr0088647,FBtr0088648,FBtr0088649,FBtr0088646	3	5	5	101	2R	4789860	4789879	TAATGTCATCATCCCTGCAG		59	4789943	4789961	TCATCTTAGCGCATGACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12780	FBgn0033301	FBtr0088736	1	1	1	60	2R	4439515	4439535	GAGACGTACTTTACTACTGGA		58	4439475	4439493	TTCATCCGGTGATAGTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30364	FBgn0050364	FBtr0088772	2	1	1	60	2R	4249320	4249338	TGATCCAAGCAAGAAGACC		59	4249278	4249299	ACTACCATCATCCTTGTATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30376	FBgn0050376	FBtr0088800	1	1	1	71	2R	4151188	4151206	TCATCTCGCCATACAACTC		59	4151135	4151153	CAAAGATCATGTTGTGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30378	FBgn0050378	FBtr0088854	3	1	1	87	2R	3838352	3838370	GAAGATGTCCGAAGAGGAC		59	3838418	3838439	GGTAACAAATTCGTTGAAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111063,FBtr0111086	1	2	60	80	2R	3247508	3249236	ATTGGTCATCACAGAACCG		59	3247446	3247464	CGAGTGAGAGTTATGTGCT		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111099	1	1	60	80	2R	3237335	3237355	AGAGATATCCACTAGTTTCGC		59	3236463	3237295	TCGATGAACTTGTACCATCTG		59	NA	
Drosophila melanogaster	50	Tsp42Ec	FBgn0033124	FBtr0086179	2	1	1	220	2R	2895240	2895258	ATCCTACTGATCGTGTTGG		58	2895505	2895523	AGTTGCAGGATAAAGAGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	jing	FBgn0086655	FBtr0114364,FBtr0114363,FBtr0086104,FBtr0114365	1	4	5	184	2R	2506076	2506094	GTTTGACTTCTTCGACACG		59	2506242	2506321	ACTCGTCGGAAATGATCTC		59	NA	
Drosophila melanogaster	50	scarface	FBgn0033033	FBtr0086061,FBtr0086060	2	2	2	134	2R	1566836	1566854	TTATCCGACTCGAAAGACG		59	1565503	1566741	CCTCTTCATGTATAGATAACGC		58	NA	
Drosophila melanogaster	50	Stlk	FBgn0046692	FBtr0111111,FBtr0111112	3	2	2	75	2R	434374	434392	CTATGGATCAGCCAATGGA		58	434431	434449	TTTCTATGTTGAAGCCGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5929	FBgn0032982	FBtr0085963	2	1	1	80	2L	22189794	22189812	CAGTCCGCTTAATCTACGA		58	22189547	22189750	TTATTTAAAGCGGCTGCAG		58	NA	
Drosophila melanogaster	50	CG31601	FBgn0051601	FBtr0085947	3	1	1	60	2L	22042567	22042587	GAATTATCCGAAGATGACACC		58	22042527	22042547	CTGATGTCTTGTAATCACACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2528	FBgn0032969	FBtr0085948	2	1	1	60	2L	21992253	21992272	GCAAGGGATTCTTCTATGGT		59	21992212	21992233	GTTTCTGATCCGTCAAATATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	szar	FBgn0032885	FBtr0089947,FBtr0089945,FBtr0089946	3	3	3	131	2L	20790495	20790513	AACATTACTGCCGAATCTG		57	20790327	20790400	CTTCGAGATTCTTGTTCCG		58	NA	
Drosophila melanogaster	50	spir	FBgn0003475	FBtr0081353,FBtr0081352	1	2	4	147	2L	20334710	20334730	GAACTAGAGCACATAATCGAG		58	20336395	20336472	CACCTGCTTCATTGTTCAG		59	NA	
Drosophila melanogaster	50	Lim3	FBgn0002023	FBtr0081169,FBtr0081170	1	2	2	95	2L	19081685	19081829	ACTTCTTCAAACGTTACGGT		59	19081609	19081627	GATGGTAGACGTTGTCCTG		59	NA	
Drosophila melanogaster	50	tos	FBgn0015553	FBtr0081131	1	1	1	60	2L	18679789	18679807	GGGCACTCCTAAATCTAGG		58	18679747	18679765	CTTGGTTTGATTCTGGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10283	FBgn0032681	FBtr0081085,FBtr0081086	2	2	2	95	2L	18483895	18483915	CGATCAGGACATGTTAATGAG		58	18476903	18476986	GAAGTCATTAATCTCTTGGGAC		58	NA	
Drosophila melanogaster	50	Socs36E	FBgn0041184	FBtr0081041,FBtr0081040	3	2	2	281	2L	18141991	18142009	AAGTACGTTACAACTGCAC		57	18141235	18141747	TTATTGCTTCTGGAAACTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0100316,FBtr0100313,FBtr0081020,FBtr0081016,FBtr0081013,FBtr0081015	1	6	12	101	2L	17651479	17655676	CATACTGATACTCGTCTTGGT		59	17651398	17651416	TTGATGATATTCTCGCGCA		59	NA	
Drosophila melanogaster	50	fws	FBgn0024689	FBtr0080999	3	1	2	83	2L	17480302	17480320	AAACCAAGTGGTTAATGCC		58	17480184	17480202	ATAAAGGTGGCCAATAGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33928	FBgn0053928	FBtr0091932	1	1	1	69	2L	17436341	17436362	GTTCGGCTTTATAAGATACCAG		58	17436237	17436255	GACCATTTGATCGCTTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0080978,FBtr0080977	3	2	6	144	2L	17394476	17398601	CAATTCGGCTTATACAGATCTC		58	17398705	17398861	ATAATCATAAGATGCGCGAC		58	NA	
Drosophila melanogaster	50	CG31806	FBgn0051806	FBtr0080952	1	1	1	81	2L	16985306	16985324	TTAAACGAAGTCATGCCAG		58	16985369	16985387	CTTCCTCAACCAGGATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cni	FBgn0000339	FBtr0080849,FBtr0080848	3	2	2	101	2L	16309925	16310012	ACTACATATACGGCATGGT		57	16309842	16309860	CAACTAATACACGACGCTG		58	NA	InUTR
Drosophila melanogaster	50	beat-Ib	FBgn0028645	FBtr0080808	1	1	1	124	2L	15906996	15908081	GAAATCGATGTCGAGACTG		58	15906890	15906908	ATGGAAGTATCGAAGGTGG		58	NA	
Drosophila melanogaster	50	CG18478	FBgn0028517	FBtr0080757	1	1	1	60	2L	15670546	15670564	GGTGGCTCTTTAATTACCC		57	15670585	15670606	CTTTATTGAATATCCGATGGGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	gft	FBgn0001980	FBtr0080749,FBtr0080748,FBtr0080747	1	3	3	112	2L	15266877	15266895	CTCAGCGTTTGTTAGTACG		58	15266722	15266801	TTGTATCTTCACCCTGTGG		58	NA	
Drosophila melanogaster	50	CG32972	FBgn0028905	FBtr0080600	2	1	2	86	2L	14164081	14164100	CGTTTCTACCAGGTTAAGGA		59	14163422	14164034	GCTATCGTTCTTAATCTTGCC		59	NA	
Drosophila melanogaster	50	beta Cop	FBgn0025724	FBtr0080469	1	1	1	80	2L	13380050	13380068	CAGCAATGTCTATGGACGT		59	13380109	13380192	TAGTCTTTAGATTGACCTGCTG		59	NA	
Drosophila melanogaster	50	abo	FBgn0000018	FBtr0080168	3	1	1	60	2L	10974628	10974647	CGTATGTGTTCTTTCTGGTG		58	10974587	10974607	GGCAGGATAAGTCTATCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17139	FBgn0032307	FBtr0100836	3	1	1	106	2L	10844747	10844822	GAAGTCGGACTGAAATTTGAG		59	10844661	10844679	ACGTTTCCATACAGGTTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG17140	FBgn0032306	FBtr0100837	3	1	2	113	2L	10843819	10843838	TCACCAACAATGATCTTCTC		57	10843657	10843743	TTTGAAAGCTCACTTCGTC		58	NA	Nonspecific
Drosophila melanogaster	50	CG6144	FBgn0032259	FBtr0100565,FBtr0080034	2	2	2	72	2L	10489298	10489316	TTGGTCAACGAGTATCTGC		59	10489352	10489370	AGATGATGGGATGGAACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SamDC	FBgn0019932	FBtr0079994,FBtr0079995	2	2	2	75	2L	10340229	10340319	TTGTGTTAAGTGAGAGCAG		57	10340358	10340376	AATGGAGTAGTCGTTCCAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Trp1	FBgn0011584	FBtr0079932,FBtr0079931	1	2	2	80	2L	10011481	10011499	TTGCACTTCTGGATCTTCC		59	10011540	10011615	ATAGTTGCTCTCATATAGTGGC		59	NA	
Drosophila melanogaster	50	CG5850	FBgn0032172	FBtr0110943,FBtr0079890	2	2	2	100	2L	9962390	9962408	AGTGCTACTCAACGTACTG		59	9962050	9962327	TGAGGAAATTCTGAAGCAGG		59	NA	
Drosophila melanogaster	50	und	FBgn0025117	FBtr0079866	2	1	1	150	2L	9764622	9764641	TAAATGGACACTCCATCAGC		59	9764875	9764893	ATATCGTCATGGACCAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Trx-2	FBgn0040070	FBtr0079839,FBtr0079840	1	2	2	98	2L	9615398	9615416	AAACTGGTTGAGCTTTCCA		59	9615559	9615579	GGAGATGTTGTATTCCATTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fbp2	FBgn0000640	FBtr0079808	3	1	1	61	2L	9427136	9427154	AAGATGTCGATCGAACAGG		59	9427179	9427197	ATCACATCAATGTGTCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13101	FBgn0032084	FBtr0079783,FBtr0079784	3	2	2	85	2L	8978779	8978870	CCAGAATATGCGGATAAACTG		58	8978714	8978732	ACCAGAGATATGATGTGCA		58	NA	
Drosophila melanogaster	50	Cka	FBgn0044323	FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538	1	4	4	98	2L	8036254	8036272	ACATCAATGGAAACGAGAG		57	8036391	8036411	CCACGATTATTTCATCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Snoo	FBgn0085450	FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718,FBtr0112720	1	5	5	60	2L	7975303	7975321	GCACGACTATCTTCATGTG		58	7975261	7975281	GAGGATGATCTGGTATTTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7203	FBgn0031942	FBtr0079498	1	1	1	64	2L	7752411	7752430	TCACCTGAAATGACTTCTGG		59	7752366	7752384	GTAAAGATGCGAGCAAGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG3430	FBgn0031875	FBtr0079350	1	1	1	91	2L	6958533	6958554	GACTACCAAGCAAATATTCCAG		59	6958671	6958690	TTAGAATCGGCATTAATGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Hrb27C	FBgn0004838	FBtr0079347,FBtr0079348,FBtr0079346	1	3	3	169	2L	6924245	6924263	ACCTTCTTTAACCGCTACG		59	6924396	6924698	TTCTTGATTTCGACCTGCT		59	NA	
Drosophila melanogaster	50	CG11322	FBgn0031856	FBtr0079387	1	1	1	60	2L	6758889	6758910	CATTGCATTCTCCTTTGATCAG		59	6758850	6758869	GATAAGATCAATGGGCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr	FBgn0015623	FBtr0079250	3	1	2	99	2L	6342340	6342735	ATTCCATACAACCCACCAC		59	6342798	6342816	CCATAGAAGACGACCAGAC		59	NA	
Drosophila melanogaster	50	CG31639	FBgn0051639	FBtr0079208,FBtr0079207	2	2	2	112	2L	6154021	6154656	AATTTAATACCAGCTCGGAC		57	6153928	6153946	GATTTCCATCTGCCTTTCC		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	stai	FBgn0051641	FBtr0079196,FBtr0079197	2	2	3	179	2L	6122167	6122185	AGTGACATGAAGGAGAAGC		59	6122398	6122706	GATTGTGTTATGCTCCTTTAGG		59	NA	
Drosophila melanogaster	50	chic	FBgn0000308	FBtr0079233,FBtr0079235,FBtr0079236,FBtr0079234	3	4	4	117	2L	5976614	5976632	CACTGCATGAAGACAACAC		59	5973579	5973597	AGTACCCGCAAGTAATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gpdh	FBgn0001128	FBtr0079147,FBtr0079148,FBtr0079146	2	3	3	106	2L	5947158	5947244	GGTCTGGAGGACAAATTCC		59	5947314	5947332	ATATGCTCAGGGTGATTGC		59	NA	
Drosophila melanogaster	50	CG11034	FBgn0031741	FBtr0079140	1	1	1	103	2L	5805647	5805665	AATGGCACCTGGATAACAG		59	5806411	5806714	CCCACATAGTTGTTAAGTTCG		58	NA	
Drosophila melanogaster	50	CG14005	FBgn0031739	FBtr0079160	1	1	1	60	2L	5800929	5800950	CATAACTTTCTGGCGTATATGG		59	5800890	5800909	TCGTTTGCTTTATTAACGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TpnC25D	FBgn0031692	FBtr0079063	1	1	1	119	2L	5218754	5218773	CAACGCTGAAGGAAATTCTC		59	5218852	5218935	CCATGAATTCATCAAAGTCCAC		59	NA	
Drosophila melanogaster	50	qtc	FBgn0028572	FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260	2	5	7	99	2L	5069212	5070107	CGCGTAAGACCATTTATCG		58	5070169	5070188	TAGAAGATAGCGCTCTTGAG		58	NA	
Drosophila melanogaster	50	CG14036	FBgn0031677	FBtr0079029	3	1	1	62	2L	5054763	5054783	AGGAGTGTGACTACTATCTCC		59	5054721	5054739	GACTACGAAGCGCTATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31660	FBgn0051660	FBtr0077388,FBtr0100301	2	2	2	117	2L	4871881	4871960	ACTTTATGCATCTGTTGCC		58	4872041	4872059	CAACTTCAGTATGATGGCG		58	NA	
Drosophila melanogaster	50	Psf2	FBgn0031599	FBtr0077461	1	1	1	60	2L	4386505	4386523	CAAAGCTAGACAACCTCAC		58	4386463	4386481	GAATAGGGCAGAATGGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tutl	FBgn0010473	FBtr0089269,FBtr0089270,FBtr0089268,FBtr0089271	2	4	4	174	2L	4295611	4299075	CAATATTCCAGAAGACGCC		58	4303359	4303377	CGGATAGCTCTCATACCAG		58	NA	
Drosophila melanogaster	50	CG2955	FBgn0031585	FBtr0077468	1	1	1	60	2L	4149599	4149617	GCGTTGAGAAGCAAATACC		59	4149640	4149659	TCCAAACTCTCGCTATTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cog3	FBgn0031536	FBtr0077573	1	1	1	112	2L	3455694	3455765	ACACCTGACGGTTTATCTG		59	3455600	3455619	GTAGAATGGAGCAGATCTCC		59	NA	
Drosophila melanogaster	50	CG17224	FBgn0031489	FBtr0077672,FBtr0077671	2	2	2	112	2L	3017310	3017391	ATGAGATCGCTATTCTCGG		58	3017216	3017234	TATGGTCTGAAATCCGTCG		59	NA	
Drosophila melanogaster	50	oaf	FBgn0011818	FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780	2	4	4	104	2L	2495396	2495415	GTATTACCTCCAACATTGGC		58	2495482	2495582	GGATTTGAACCTCATTGCG		59	NA	
Drosophila melanogaster	50	CG31924	FBgn0051924	FBtr0077945,FBtr0077946	1	2	2	60	2L	1354545	1354563	TCAAAGCGTTCAACATTCC		58	1354503	1354521	ATCCTAAACGAATCCCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	S	FBgn0003310	FBtr0077993,FBtr0077994	3	2	2	114	2L	1052484	1052574	CCCAAAGAGATTACCATACAC		58	1052390	1052408	CCAGCATGATTGTGTAGAG		57	NA	
Drosophila melanogaster	50	ATbp	FBgn0039946	FBtr0113737	1	1	1	61	XHet	85057	85075	AAGCACATACAGGATGAGC		59	85100	85178	GATGTACGACTGTGTTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32661	FBgn0030356	FBtr0073593	3	1	1	295	X	11812517	11812634	GCGACGGAAATCTATTTGTG		59	11812177	11812195	GTGTCAGTTGACCCTTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	tgy	FBgn0030984	FBtr0100167,FBtr0074702	1	2	2	66	X	19019676	19020055	ACTACAATCCGAGATCGTG		58	19019628	19019646	CTGTGCACATAGTGAAAGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	scu	FBgn0021765	FBtr0074511	3	1	1	71	X	17986194	17986212	GGATAAGTTCGGTCGTCTG		59	17986247	17986265	AAGTTGAACGTCTTTACCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9512	FBgn0030593	FBtr0073979	3	1	1	140	X	14798009	14798027	ATTGGTTCACCTCAGATCC		58	14796867	14796885	GATCTGGAAGATCATCGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12717	FBgn0030420	FBtr0073704	2	1	1	60	X	12657049	12657068	CATCAGTGATAACATTGCCG		59	12657008	12657028	ATGCACCTTCCTATAGAACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0110967,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	1	9	9	103	X	10691465	10691553	CTACAGTGTACAGTCTGCC		59	10691380	10691398	GTTGCAATTGTTCTTTGGC		58	NA	
Drosophila melanogaster	50	CG12643	FBgn0040942	FBtr0071481	3	1	1	127	X	10159126	10159144	ATAAACCACAACCAGTGCA		59	10159017	10159035	ATGGATTCGGCTTACTGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG32720	FBgn0052720	FBtr0071082	2	1	1	110	X	7428105	7429632	CAAATCGCTGGTTTGTCTG		59	7427254	7427272	AACAGAAGGAACCAGAAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	sqh	FBgn0003514	FBtr0070877	2	1	1	100	X	6117686	6117704	TTCGACGAGGAGAATATGG		58	6117531	6117622	TACATCTCGTCCACATCCT		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12680	FBgn0029740	FBtr0070726	1	1	1	60	X	4891582	4891640	CAGGGATTAGCTGTATCCTG		59	4891663	4891681	TACTGTTCGCATTCTTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32801	FBgn0052801	FBtr0070355	1	1	1	69	X	1796692	1796710	CCATAGATCTAACCGGCAC		59	1796482	1796659	TGTTAGCGGATGAACTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14816	FBgn0023517	FBtr0070366	1	1	1	167	X	1767145	1767163	TAGTAGCCTCCACAATGGT		59	1766930	1767014	GAAGGAACTGAGATGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14786	FBgn0027794	FBtr0070230	1	1	1	81	X	1352353	1352371	TTCGACCTACACATCAAGC		59	1352229	1352308	GAAAGGCTGGATACATGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14632	FBgn0029538	FBtr0070192	3	1	2	143	X	787516	787534	TCAGGTGAACAACTATGGC		59	786652	787256	CACGAGAATAGCGTTTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Roc1a	FBgn0025638	FBtr0070122	1	1	1	94	X	541544	541646	TTTGAGGTGAAGAAGTGGA		58	541769	541787	CACAAGTCCATGATGTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41041	FBgn0069966	FBtr0114295	1	1	1	104	U	403738	403756	AGAAGGCGATTAGAGACAG		58	403147	403670	TAGATCTCCAAAGGGAACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2241	FBgn0039788	FBtr0085680	1	1	1	76	3R	26409039	26409112	AACTCAACCTCAAGGTTCG		59	26408981	26408999	AACCTCCGCAATATAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mlc2	FBgn0002773	FBtr0089747	3	1	2	254	3R	25999491	25999510	GAAGAAGACCAAGGAAGAGG		59	25999097	25999115	ATAATACCGTCCTTGTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	DopR2	FBgn0015129	FBtr0085467,FBtr0085468	3	2	2	60	3R	25466925	25466943	ATGGTCTTCACCTACTGTC		58	25466883	25466902	TCTTAAGAGATCTCGTCTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13614	FBgn0039194	FBtr0084614,FBtr0084615	2	2	2	107	3R	20196249	20196328	GTGTTTACACTACCAACCG		58	20196399	20196417	GTTTAGCTTACACGAGTCG		58	NA	
Drosophila melanogaster	50	CG6697	FBgn0027526	FBtr0084347	1	1	1	61	3R	18887481	18887499	ATATTCCGCAAGACACAGG		59	18887523	18887599	CCTTTGTACTTCAGGTTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or94b	FBgn0039034	FBtr0084342	3	1	1	89	3R	18816026	18816044	TGCTTAACTGCTACATGGA		58	18816095	18816237	TCTTCACAAAGATGGGTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7031	FBgn0039027	FBtr0084313	1	1	1	60	3R	18630084	18630506	AACGTTAATTTGCAGATGCC		59	18630527	18630547	CACTGACAATTGTCAGTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6028	FBgn0038924	FBtr0084186	1	1	2	228	3R	17850771	17850875	GATCATCTGCATTGGTCTG		58	17850490	17850508	GAAGACATAGTCCATGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	glec	FBgn0015229	FBtr0084157	3	1	1	164	3R	17677583	17681125	AAAGGCATGTACAATGTTCG		59	17677438	17677456	CTTCTGATCTGCCAATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-2sigma	FBgn0043012	FBtr0084103	3	1	1	157	3R	17095550	17095570	CCAAGTGGTATATGAACTTCG		58	17095353	17095371	GATGCAGAAGTACAGACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7079	FBgn0038849	FBtr0084043	3	1	1	65	3R	16873763	16873851	TAATATAAGGCTGGACCGC		58	16873716	16873734	GTTAGGTCTTCATTGTCGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	GluClalpha	FBgn0024963	FBtr0100128,FBtr0083788,FBtr0083787,FBtr0100127	1	4	4	108	3R	15578394	15579482	GCTTCACTAGCAAATAATGCC		59	15579552	15579570	TTCCAGATGGTCGTATTCG		59	NA	
Drosophila melanogaster	50	l(3)05822	FBgn0010877	FBtr0083596,FBtr0083595	3	2	2	181	3R	14115634	14115652	AACTACGTGGACATCAAGG		59	14115413	14115490	GTAACCAATTCGTTCTCCTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG14317	FBgn0038566	FBtr0083541	3	1	1	60	3R	13907414	13907433	TCAACTCCTTGTACCATTCG		59	13907453	13907474	GTCAGACAGATATCCTGAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14318	FBgn0038544	FBtr0083530	3	1	1	122	3R	13608131	13608152	GACTGCGAATGTTATAAACCAG		59	13606480	13606499	AGGGTATTACGTCGTTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8925	FBgn0038404	FBtr0083253,FBtr0113241	3	2	2	114	3R	12005513	12005531	TCCGACGTAGTCTTATTGG		58	12005609	12005687	ATGAGACACTTGGCTATGG		59	NA	
Drosophila melanogaster	50	Trax	FBgn0038327	FBtr0083093	3	1	2	60	3R	11188258	11188329	GGTTACATCAGTCTAAACTGTC		58	11188349	11188368	TCATGGTAGTGATCTTACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6276	FBgn0038316	FBtr0083123	2	1	1	72	3R	11145472	11145554	GAGGAGGTCTTTAAACTAATCG		58	11145421	11145439	AGTAGTATTTGTGCCTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4860	FBgn0037999	FBtr0082623	1	1	1	118	3R	8046705	8046853	GTTCGAGAGGAGTATGGTG		59	8046605	8046623	AGGTACAGGTTATTCACGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ugt86Dd	FBgn0040256	FBtr0113321	1	1	1	76	3R	6954012	6954033	GAGATTATTAACTGTGATCGCG		59	6953957	6953975	AAATCTTCGCACTTTCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12420	FBgn0037797	FBtr0082222	2	1	1	173	3R	6049093	6049111	TATGAGTACGCGAAAGCAG		59	6049377	6049395	TTAAAGCAATCCGTCACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG16904	FBgn0037763	FBtr0082154	2	1	1	63	3R	5642491	5642509	CTACAACATCGGACAAGTC		57	5642374	5642464	GAATAACAGATGGATGCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8507	FBgn0037756	FBtr0082140	1	1	1	80	3R	5617769	5617852	CTTAAGCCCTACAAGAAATTCC		59	5617893	5617911	TCGGTTGAGTTTCTTGTCC		59	NA	
Drosophila melanogaster	50	CG8129	FBgn0037684	FBtr0082026,FBtr0082027	2	2	2	120	3R	5192794	5192813	AGTGGCTATCCTAAGATTGG		58	5192896	5192978	CACCACAACTTTCTTTCCC		58	NA	
Drosophila melanogaster	50	CG11997	FBgn0037662	FBtr0081972	2	1	1	60	3R	5004098	5004119	CCGAGAACTTTGAAGATTATCC		58	5004139	5004158	ATCACTTCCTCGTAATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cks85A	FBgn0037613	FBtr0081949	1	1	1	160	3R	4541377	4541466	ATACAGGCATGTTATCTTGC		58	4541236	4541254	TGCGTCGGAATAGAATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31496	FBgn0051496	FBtr0081582	1	1	1	60	3R	3171454	3171472	CTACACGCAAACTATTCGG		58	3171496	3171514	CTGTGTCTCCGTATAGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Edg84A	FBgn0000552	FBtr0081688	2	1	1	72	3R	2510236	2510315	TAAGACTGCGCTATTTGTG		57	2510351	2510369	ACTTCCAGATGATTTCGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3634	FBgn0037026	FBtr0078272	3	1	1	60	3L	20801974	20801993	CTGATCCTGATCTTTGAGTG		57	20801868	20801953	CTTGCTCTATAAACGAAGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7757	FBgn0036915	FBtr0074891,FBtr0074892	3	2	2	124	3L	19904510	19904529	TATACTGACCCAGGATCTGG		59	19904616	19904688	GTTTCAAGGGCTCATTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10424	FBgn0036848	FBtr0075033	2	1	1	75	3L	19090456	19090474	CATCCAGTGCTAGACTGTG		59	19090321	19090419	CAATAACAACGACGTGAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ftz-f1	FBgn0001078	FBtr0075086,FBtr0075087	2	2	2	88	3L	18745982	18746125	CAGTGAATGACAAATTCAGAGG		59	18745915	18745933	CTTGGTGTACAGGTGATCC		59	NA	
Drosophila melanogaster	50	MYPT-75D	FBgn0036801	FBtr0075049	3	1	1	255	3L	18656384	18656402	AGGAGGAGATTTGGAGGAG		59	18656846	18657250	TTCACAGATGTCTGAAGGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	W	FBgn0003997	FBtr0075133	2	1	1	107	3L	18163175	18165161	AGAAACCACAGAGCTTCAC		59	18163086	18163104	ATTCGATTACACGTCTCCT		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13050	FBgn0036591	FBtr0075478	3	1	1	233	3L	16272162	16272302	GACTGCTACTCATTACAATCG		58	16271949	16271967	GACCAAGACCTCCATAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5830	FBgn0036556	FBtr0075521	2	1	1	81	3L	15988283	15988301	GGACCTTCAGAAGATTGTC		57	15988152	15988238	GGATTTAACAGGAACTGCA		57	NA	
Drosophila melanogaster	50	CG3919	FBgn0036423	FBtr0075716	3	1	1	78	3L	14404297	14404315	CACGATGACAACTACTTGC		58	14404357	14404602	TAACCGAATTTCGCATCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG32103	FBgn0052103	FBtr0075983,FBtr0075982,FBtr0075984	2	3	3	147	3L	12398217	12398235	ACGTACCTGATGACTTCAC		59	12398023	12398106	CTTTGTGTTTGTACCTGCA		58	NA	
Drosophila melanogaster	50	CG10907	FBgn0036207	FBtr0076029	3	1	1	100	3L	11787836	11787913	AAATCCAAGATCCGTGAGG		59	11787977	11787995	TTTGCTGCTTTCTCTTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ufd1-like	FBgn0036136	FBtr0076223	3	1	1	67	3L	11115947	11116022	ATTATTATGCCTCCCTCGG		58	11115898	11115917	TTGAACAGCATTGGATACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fad2	FBgn0029172	FBtr0076196	2	1	1	60	3L	11017529	11017547	ATTCATGGCCTATTTGGGT		58	11017571	11017589	CTTGACCAAATCCAGTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lark	FBgn0011640	FBtr0076842,FBtr0076843,FBtr0076841,FBtr0076844	3	4	5	100	3L	7333781	7333799	TACAGAGATCGCATGTACG		58	7333861	7333986	TAGTCATAGTCCCTAAAGCCA		59	NA	
Drosophila melanogaster	50	Lcp65Ac	FBgn0020642	FBtr0076991	2	1	1	208	3L	6137933	6137951	CAAGTAACGTTGACTAGCC		58	6138123	6138211	AAAGCAAAGTTGTAGCCCT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13704	FBgn0035583	FBtr0073353	2	1	1	111	3L	4899023	4899041	CTACTTGGTGATATGCCTG		57	4900350	4900422	AAGGCCAGTGAAGTATCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Shab	FBgn0003383	FBtr0072974,FBtr0110776,FBtr0072975	3	3	4	300	3L	2925192	2925211	ATCCTGAACTTCTATCGCAC		59	2925474	2940796	ATATCACTGCGATAACCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13800	FBgn0035338	FBtr0072891	1	1	1	70	3L	2388781	2402572	GACTGTTCAAACCACTTGG		58	2402606	2402624	TATTCCGGTCATTGGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Start1	FBgn0035028	FBtr0089867,FBtr0089868	3	2	2	80	2R	20462814	20462894	TGCATTGTGATCAATGGAG		58	20462937	20462956	AAAGAGCGATTTGTAGATGG		57	NA	
Drosophila melanogaster	50	CG30419	FBgn0050419	FBtr0072275	2	1	1	71	2R	20103103	20116616	GGCAATTCCAACAAGATACTG		59	20103052	20103070	GGTCCAGTAACTGGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30411	FBgn0050411	FBtr0072016	1	1	1	72	2R	19303766	19303784	AAGATGTTTACCTGACGCC		59	19303819	19303901	TAGTTATCGCTGGCTTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3124	FBgn0034840	FBtr0072046	3	1	1	204	2R	19170849	19170867	GAACAGCTCCAATATGTGG		58	19170587	19170682	TATCGATGGTGCGTTTAGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG30284	FBgn0050284	FBtr0071684,FBtr0071685	1	2	2	191	2R	17538929	17539031	ATATACCGCAAACATCCGG		59	17538756	17538774	CCATATTCAGATCGGTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha100-3	FBgn0028669	FBtr0086602	3	1	1	60	2R	14797998	14798016	GAGGATATGAGTGCTGGAG		58	14797956	14797974	GTGGCATATGATTGACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18432	FBgn0034238	FBtr0086943	1	1	1	60	2R	13428267	13428285	ATCAACGAATGCATTGGAG		58	13428309	13428385	GCCATATGTTGAGGTTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30459	FBgn0050459	FBtr0087015	3	1	1	88	2R	12920823	12920908	CGAAACATCATAAGGAGTTCG		59	12920755	12920773	TACCACAGCATAGACAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087272,FBtr0087270,FBtr0087273,FBtr0087271	2	4	7	89	2R	11848682	11848827	CCAATTCGAGACACATATTCTC		58	11848614	11848632	GATCCATTGGATTTCGGGA		59	NA	
Drosophila melanogaster	50	CG12863	FBgn0033948	FBtr0087500	3	1	1	212	2R	10508294	10508363	GCAAGGTTATATGCATGGG		58	10508045	10508064	TTACAATCACCAGTCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30485	FBgn0050485	FBtr0087640	3	1	1	60	2R	9738594	9738614	CACCCTATTCTTATGATCCGA		58	9738636	9738654	AGGCTATTTCTCTGATGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ox	FBgn0011227	FBtr0087861	2	1	1	227	2R	8644994	8645013	CAAATCAGCTGTGAGTTTGG		59	8644720	8644804	ATGTCCTTCCAGAGTTTGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG8083	FBgn0025709	FBtr0088560,FBtr0088562,FBtr0088561	1	3	3	89	2R	4967849	4967870	GAGGATCTCGATTTATGTACTG		57	4967919	4967991	TCATAGTTGGTTATGTCGTG		57	NA	
Drosophila melanogaster	50	CG8709	FBgn0033269	FBtr0113055,FBtr0088815	2	2	2	138	2R	4027872	4028032	TCAACTATCCAGACGTGTG		59	4027752	4027770	GTTAGTGGCTTCTGGAAGG		59	NA	
Drosophila melanogaster	50	CG9272	FBgn0032907	FBtr0089944	1	1	1	95	2L	20926989	20927007	AAAGACCGAGGTCTAACTC		58	20926856	20926931	AGCTTTGTTCTTGTAGAAGG		57	NA	
Drosophila melanogaster	50	hk	FBgn0001202	FBtr0081180	1	1	1	74	2L	19031683	19031701	ATGAACGCATTCTTTCCCT		59	19031563	19031645	GTTTACCAAACTCGCTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	pburs	FBgn0032546	FBtr0080634	2	1	1	126	2L	14416992	14417068	TGAAAGAGTGCTACTGCTG		59	14416884	14416902	CGAAGACGTATATCCATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33642	FBgn0053642	FBtr0091619	3	1	1	107	2L	13530289	13530307	AACATCTCACCGAAATGGT		59	13530375	13530456	GTCAACGTATAGTTGAAGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5885	FBgn0025700	FBtr0079900	1	1	1	91	2L	9917858	9917942	TTCCAATCTGGCTCTTCTG		59	9917785	9917803	CAGATAAGTACTAGCGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7219	FBgn0031973	FBtr0079549	3	1	1	99	2L	8005559	8006448	CTCAATCCCGACTACAGAC		59	8005478	8005497	TGATATTGTATCGTGCTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bsg25D	FBgn0000228	FBtr0079085,FBtr0079084	3	2	3	274	2L	5274257	5274275	TCAGAGATCGAGGATTTGC		59	5273573	5274019	GAAGTGGTGAGGTTATTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9641	FBgn0031483	FBtr0077677	2	1	2	83	2L	2975213	2975231	GAGGAAGAGAATTGCAACG		58	2975077	2975166	TTCCATGAATCCCGTTACC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14346	FBgn0031337	FBtr0077926,FBtr0077927	3	2	2	187	2L	1368290	1368309	CTGAGCACTTACACATACGA		59	1368597	1368615	GTTAGCTCGATCACAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	stnB	FBgn0016975	FBtr0111138,FBtr0111137	3	2	2	81	X	22386913	22387148	ACCATCAAATTTCAACCACC		58	22386851	22386869	GAAGTTCACGATTCTTGGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG14617	FBgn0031191	FBtr0100652,FBtr0100651,FBtr0077352	2	3	5	129	X	21887458	21887783	GATTGCTTCAACAGCTCTG		59	21887875	21887894	TGTTTGAGGAGTAGTTTGGT		58	NA	InUTR
Drosophila melanogaster	50	CG14193	FBgn0030994	FBtr0074670	2	1	1	60	X	19084732	19084750	TTCATTGTCACCTGGAAGG		59	19084774	19084792	GTTTGATCTCCTGAACAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	disco-r	FBgn0042650	FBtr0074251	2	1	1	60	X	16016055	16016073	AGGATCCGTTGATGATTCC		59	16016013	16016031	GGAAGCGGATACCTTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Graf	FBgn0030685	FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197	3	6	6	81	X	15646356	15646433	AACCAATGTTCGTTACTCC		57	15646293	15646312	ATAGTTCTCCGGAATGAGTC		58	NA	
Drosophila melanogaster	50	CG2467	FBgn0030355	FBtr0073594,FBtr0073595	3	2	2	145	X	11806295	11806314	GGTAACTACACTACCAACGG		59	11805446	11805534	TTGAGATCAACCTGCATGG		59	NA	
Drosophila melanogaster	50	Hsc70-3	FBgn0001218	FBtr0073608,FBtr0073610,FBtr0073609,FBtr0073611	3	4	4	60	X	11697601	11697619	ATCTATTCCGTTCCACCCT		59	11697559	11697577	TTGTTCATGTCAGCATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gs2	FBgn0001145	FBtr0073494,FBtr0073496,FBtr0073495	3	3	3	175	X	11318343	11318361	ATCAACAAGACGATCCTCG		59	11322574	11322592	GAGCTTCCATCGTAGTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41555	FBgn0085686	FBtr0114135	3	1	1	97	U	4873346	4877303	GAAAGAAACCGCTGATACG		58	4877362	4877382	TTCTCGTCTCCATAATAACGG		59	NA	
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211	3	4	7	199	4	1080210	1080228	TTGGGAGTACAAGCTAAGC		59	1079962	1080047	TGAGAAGAGTCCATTGCAG		59	NA	
Drosophila melanogaster	50	CG11340	FBgn0039840	FBtr0085766	3	1	1	60	3R	27129455	27129473	GTTGGATGTACAACACCAC		58	27129413	27129431	AAACTCACTGGGTTATCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31126	FBgn0051126	FBtr0084663	1	1	1	60	3R	20485415	20485433	AGTTTCCATACGAAACCTG		57	20485457	20485475	GAGGATCTGTCCTAAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myo95E	FBgn0039157	FBtr0100517,FBtr0084579,FBtr0084578,FBtr0100518,FBtr0100519,FBtr0100516,FBtr0100520	1	7	7	97	3R	19985254	19985381	TCTAGTCGATATGGAAAGCT		57	19985027	19985045	TGATAGGGTCCGTTATACG		57	NA	
Drosophila melanogaster	50	CG31145	FBgn0051145	FBtr0084480,FBtr0084479	1	2	2	83	3R	19434146	19434165	GTACGACCTTATGGACATGG		59	19433379	19434101	CCGTAGACCTTGAATGTCTC		59	NA	
Drosophila melanogaster	50	CG6560	FBgn0038916	FBtr0084151	1	1	1	71	3R	17712036	17712054	AAGACCACGATACTGAAGC		59	17711920	17711938	GATGTTAAATCCTGCCGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp12e1	FBgn0037817	FBtr0082250	1	1	2	176	3R	6261575	6261593	TATTTCCACATTGGGAACG		57	6261733	6261851	CTTGTCAGGACTAGGATCC		58	NA	
Drosophila melanogaster	50	Fps85D	FBgn0000723	FBtr0082053,FBtr0082051,FBtr0082052,FBtr0082054	2	4	4	90	3R	5194239	5194257	GATGTGGGAGATCTTCTCC		58	5194104	5194186	CATACGATATCCCGTATCGA		58	NA	
Drosophila melanogaster	50	CG11977	FBgn0037650	FBtr0081961	1	1	1	60	3R	4823639	4823657	CCAACAAGAAGCACATCAC		59	4823744	4823762	TGATTTCTACCGCATTTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7918	FBgn0037546	FBtr0081789	2	1	1	83	3R	3908802	3908820	TCGTGGACAGGAATATTCG		59	3908866	3908953	TCGAAACGGTTCCTATTAGC		59	NA	
Drosophila melanogaster	50	CG31496	FBgn0051496	FBtr0081582	3	1	1	76	3R	3171866	3171885	CCACAGGTTATCCTACTCTC		58	3171924	3171942	GGAGTATTCAGTGTGGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10277	FBgn0037442	FBtr0113198,FBtr0081722,FBtr0081720,FBtr0081721	1	4	4	88	3R	2211842	2211860	AACAAGTACGACACCTGTG		59	2211912	2212067	GTGTGATAGGGATGTGAGC		59	NA	
Drosophila melanogaster	50	CG10632	FBgn0036302	FBtr0114612,FBtr0114609	1	2	4	162	3L	12533237	12533498	ATGTCTACAAGGCCAATCG		59	12531552	12531570	AGAGAACCAATCCGTAGGA		59	NA	
Drosophila melanogaster	50	CG6279	FBgn0036125	FBtr0076235	2	1	1	82	3L	11087696	11087717	CCAATCAGATGCTTAAGAATCC		59	11087443	11087653	CACATCCATGGTGATCCTC		59	NA	
Drosophila melanogaster	50	JIL-1	FBgn0020412	FBtr0076236,FBtr0076237	2	2	2	80	3L	11075165	11075183	CCGGAGAACATAATGTTCG		58	11075043	11075121	GCGATTATTGTAACATGCG		57	NA	
Drosophila melanogaster	50	Jon65Ai	FBgn0035667	FBtr0077067	1	1	1	72	3L	6047296	6047314	GTTCCATTATCGGCAACAC		59	6047242	6047260	TAGATGGTCACCGATTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Faa	FBgn0016013	FBtr0073278	3	1	1	72	3L	4073176	4073194	CGAAGGGTTCAGAATTGGA		59	4073062	4073080	AGCTTGATCTCAGACTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	YT521-B	FBgn0027616	FBtr0073079,FBtr0073078	2	2	2	142	3L	3373085	3373103	GAACAATAGCGACAACGTC		59	3372842	3372982	CAAATTTACCACTCTCGTTGAC		59	NA	
Drosophila melanogaster	50	drpr	FBgn0027594	FBtr0072798	3	1	2	117	3L	1716852	1716870	TGTGTACAACGAATCCCTC		59	1716546	1716682	ATCGTATTCATCCTCGGGA		59	NA	
Drosophila melanogaster	50	CG30269	FBgn0050269	FBtr0071867	2	1	1	61	2R	18556199	18556218	GAACACCAATCACTACTGTG		58	18556242	18556260	CTCATTTGCGATCGTAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sara	FBgn0026369	FBtr0071641,FBtr0071642	3	2	2	117	2R	17373767	17373847	ATTATTAAGTGCGAGGACTGG		59	17373926	17373944	AAAGATCGAGAAGTGGCAG		59	NA	
Drosophila melanogaster	50	hts	FBgn0004873	FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086547,FBtr0086548	2	6	6	81	2R	15298014	15298106	GCAACAAGAGTCACTTTGTC		59	15297952	15297970	CTGCAGCCGATATAGATGG		59	NA	
Drosophila melanogaster	50	cora	FBgn0010434	FBtr0086508,FBtr0086506,FBtr0086507,FBtr0086509	3	4	4	115	2R	15123911	15123994	GTCTACCGCGATAAATTGC		59	15124073	15124091	TCGTACTGCTCGAATTCAC		59	NA	
Drosophila melanogaster	50	AGO1	FBgn0026611	FBtr0087613,FBtr0087612,FBtr0087614	2	3	3	103	2R	9835755	9835774	GTATCAGCTATGCCATACGT		59	9835605	9835689	CCAGATGATATCTGGCACG		59	NA	
Drosophila melanogaster	50	CG12129	FBgn0033475	FBtr0088395	2	1	1	83	2R	5921489	5921507	ACTCTGGAGAAGTCAAGGA		59	5921605	5921623	AAAGCTCCTTATCGATGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	hig	FBgn0010114	FBtr0088608,FBtr0100119,FBtr0088606,FBtr0088607	2	4	4	86	2R	5117876	5117894	TCATGGACTGCATGTATCC		59	5117583	5117829	GAGACCATCCTGTAGAATACTG		59	NA	
Drosophila melanogaster	50	LvpH	FBgn0002570	FBtr0088759	2	1	1	63	2R	4337512	4337533	GACGATGTGATCATCTATTCAC		58	4337408	4337429	GGTTGAGAACGATTACATAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30378	FBgn0050378	FBtr0088854	2	1	1	61	2R	3838349	3838367	CGAGAAGATGTCCGAAGAG		59	3838389	3838410	CATCTTTGTCCTGATCAATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111082	3	1	60	89	2R	3247291	3249236	ATTGGTCATCACAGAACCC		59	3247220	3247239	CTATCCTCCTGCCTAATCCT		59	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086197,FBtr0086196	3	2	11	108	2R	2764774	2764792	TCAGCCATCATACACAAGG		59	2764586	2764604	CCTCAGGCGACATAATAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	gus	FBgn0026238	FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753	2	6	6	62	2R	1005304	1008282	TTGGTGGATTAGATCCCGA		59	1005260	1005279	TTTGACGAATTGTTCTTCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG41121	FBgn0069930	FBtr0111251	2	1	2	120	2L	22708254	22708272	AGTAGTGATGTATCTCCGC		58	22708356	22709162	GAACGTGGTCTAAAGAACG		58	NA	
Drosophila melanogaster	50	Df31	FBgn0022893	FBtr0085920	3	1	3	152	2L	21629740	21629758	AAACCCTCAGTTACAACGT		59	21628149	21628167	TGCATCTTTCTTCACAGCA		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	tup	FBgn0003896	FBtr0081111,FBtr0081112	3	2	2	105	2L	18862253	18862271	AGTATTAGGGACAAGCGAC		58	18862105	18862184	CATTGTAGCAGGTTCTGAG		57	NA	
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976	1	4	6	107	2L	17394484	17400407	CTTATACAGATAACAGCAGCG		58	17400476	17400494	CAATGAAGGCAATCTGTCC		58	NA	
Drosophila melanogaster	50	rk	FBgn0003255	FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610	3	4	5	90	2L	13991706	13992947	GTGGTCGTCCTAGATTTGG		59	13991051	13991652	ACAAAGTTAGCTCCTCCAG		58	NA	
Drosophila melanogaster	50	CG31635	FBgn0051635	FBtr0113410,FBtr0079326	2	2	2	124	2L	6640195	6640366	GTCAATTTATGCCGTGGTC		59	6640089	6640107	TCCAAGCTATGGTTGTAGC		59	NA	
Drosophila melanogaster	50	Acp26Ab	FBgn0002856	FBtr0079156,FBtr0079157	2	2	2	60	2L	5892670	5892688	GTTCACAATCAAGATCCCA		57	5892628	5892648	CTGTAGTCGTATAGGGTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15439	FBgn0031606	FBtr0077455	2	1	1	60	2L	4450934	4450953	TATGTGGATCGATATTCGCT		58	4450893	4450911	ACTCCTTGGGTACATTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aru	FBgn0029095	FBtr0078033,FBtr0078031,FBtr0078032	2	3	3	92	2L	864328	864406	GAAACAGGGAACATAATCGA		57	864255	864274	GTTGTTGTATAGCTCCATGG		58	NA	
Drosophila melanogaster	50	Gs1	FBgn0001142	FBtr0078115,FBtr0078114	3	2	2	65	2L	133222	133240	GGATTAAGGCATGTGACGA		59	133269	133287	CATACTCCTCAGCTATGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9911	FBgn0030734	FBtr0074243,FBtr0074241,FBtr0074242,FBtr0074244	2	4	4	81	X	16188807	16188826	CAAATCTGAAGGAAGACTGC		58	16188675	16188763	ATGATAGGTGTACCTGGTG		58	NA	
Drosophila melanogaster	50	CG32806	FBgn0052806	FBtr0070302	1	1	2	76	X	1683699	1683767	ATGTGGATGCAATTAGGCT		59	1684194	1684215	TCTCTAGAGATCATCTCATCAC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177	1	4	5	148	X	938610	938688	AATCTGGATAAGGCTCCTG		58	938800	938818	CTATCTGGCATACCTGGTC		58	NA	
Drosophila melanogaster	50	Mgat2	FBgn0039738	FBtr0085602,FBtr0100418	2	2	2	187	3R	25845046	25845124	CAACTTCAATTATCTGGACTCG		59	25844816	25844834	GACTACTGGCATTCAGGAG		59	NA	
Drosophila melanogaster	50	CG6455	FBgn0019960	FBtr0084188	3	1	2	152	3R	17847984	17848135	ATCACCTACGCCAAATACG		59	17847850	17847870	AGACTTGACCTTATCGATCTG		59	NA	
Drosophila melanogaster	50	Mekk1	FBgn0024329	FBtr0083683	3	1	2	115	3R	14565052	14565428	AGTCCAGTCATCTGATTGC		59	14564257	14564275	ACCAATCCGATTTCGAGTC		59	NA	
Drosophila melanogaster	50	DNaseII	FBgn0000477	FBtr0083538	2	1	1	93	3R	13845224	13845801	AAACGATGTAGATTGGTGG		57	13845858	13845876	GTACAGGTACTTCAAGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33324	FBgn0053324	FBtr0081727	1	1	1	166	3R	2272025	2272184	TTATCGCCAGTGTATCACG		59	2272314	2272332	GTGTTGCAACTAATCGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bbg	FBgn0036425	FBtr0075726	3	1	1	61	3L	14504030	14504048	TGAAGAGGAGTTCTCCTCC		59	14503003	14504005	CCGATTTGACAAGGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3335	FBgn0036018	FBtr0076383	2	1	1	156	3L	9619782	9619859	AAACCCAAGATAATGATGGC		58	9620027	9620045	GGAATACGTAAGGATCGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4942	FBgn0035960	FBtr0076524	1	1	1	66	3L	9066768	9066843	TTCGATCAAGAAGCAGTGG		59	9066873	9066891	AATCATGGTCTTCATGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13912	FBgn0035186	FBtr0072625	1	1	1	137	3L	1189810	1189895	GTCACATACTGTGAGGGTC		59	1189996	1190014	TACCTGTGATCGTATTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	IM23	FBgn0034328	FBtr0086729	3	1	1	73	2R	14270689	14270707	TGAAGTGCCTGATTCTGTC		59	14270570	14270652	GATAATCACATTTCCGGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34194	FBgn0085223	FBtr0112387	1	1	1	86	2R	13432118	13432337	CTTCCTCAATGTCCTCCTC		59	13432387	13432405	AAGACGGTGACACAATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR31808	FBgn0062978	FBtr0080943	2	1	1	114	2L	16715863	16715884	CCACTACTGAAATTTCTAGAGC		58	16705789	16715788	GCGTAATATGCAAGTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9886	FBgn0031428	FBtr0077770	2	1	1	134	2L	2421896	2421914	TACTGGATCCTCAACTCAG		57	2422011	2422086	CTTTAATGACTGGCTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mir-310	FBgn0067694	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:P:35Bd	FBgn0028882	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snmRNA:430:CR33734	FBgn0053734	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Pp1-Y2	FBgn0046698	FBtr0113894	2	1	1	115	YHet	280285	280303	ATCTATCGAGACCATGTGC		58	291297	291315	AACAGTCGACAAATGTACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0269	FBgn0029067	FBtr0077226	2	1	1	77	X	21192937	21192955	CATGTGGACTACTTCCTGG		59	21192793	21192811	TCCGTAAATCTCCATGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32511	FBgn0052511	FBtr0077258	1	1	1	60	X	21027595	21027613	CAATGGAGCCTACTACGTG		59	21027553	21027571	GTTGTTGTACGAGAAGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	unc	FBgn0003950	FBtr0077259	3	1	1	276	X	20983986	20984067	ATAGAAACCAAGCTCCTGC		59	20983728	20983746	GGACCTTCTGAAACTTTGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	r-cup	FBgn0031142	FBtr0077269	3	1	2	133	X	20895466	20895484	GATCCACCTACTCCTATGC		58	20895082	20895100	CTCATGGAGCAAGTAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089406,FBtr0089407,FBtr0089401,FBtr0089404	1	4	13	137	X	20101657	20103198	ATTCACAGACGACGAAGAG		59	20101538	20101556	TTCTTGATCTCGAGTGGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG17003	FBgn0031082	FBtr0070035	1	1	1	61	X	19895258	19895276	CAGAACGATGCAAATTCCG		59	19895215	19895233	ATCGATGTACCTACCACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nep3	FBgn0031081	FBtr0070000	1	1	1	119	X	19859149	19859239	GGATATTCCTGCAATCAATGG		59	19859320	19859338	CTTCTCCAGTACGTTACGT		58	NA	
Drosophila melanogaster	50	CG32529	FBgn0052529	FBtr0100839,FBtr0074800,FBtr0074801	1	3	3	80	X	19795511	19795910	ACCGTATATGGAATATCCACC		58	19795952	19795970	ATATGAGGCCCAGTATGGA		59	NA	
Drosophila melanogaster	50	CG14204	FBgn0031032	FBtr0074729	3	1	1	105	X	19479667	19479744	CTGTGATGTTCAAGAATGGA		57	19479812	19479830	TAACCGAACATAGTACCGA		57	NA	
Drosophila melanogaster	50	CG8034	FBgn0031011	FBtr0074684	1	1	1	179	X	19177216	19177397	CCGTTCAATTATGGCTGAG		58	19177055	19177073	ATCACAAATAGGGCTTTGC		58	NA	
Drosophila melanogaster	50	tgy	FBgn0030984	FBtr0074702	2	1	2	145	X	19020802	19020820	ATTGGTTCATAAAGGCGGA		59	19020312	19020399	CATGTATGACTCGTTCTTCTG		58	NA	
Drosophila melanogaster	50	fu	FBgn0001079	FBtr0074602	2	1	1	140	X	18554036	18554054	TGTTCCTCAACTTCCTCAC		59	18554226	18554244	CAATCCGTTCTACAAGCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Fim	FBgn0024238	FBtr0074443,FBtr0074441,FBtr0074442	1	3	3	87	X	17182017	17182035	AACAACCATCCAGGATTGG		59	17181556	17181966	AATTGCGGTAGGTCTTCTC		59	NA	
Drosophila melanogaster	50	rok	FBgn0026181	FBtr0074286	3	1	1	88	X	16520824	16520908	TTACGAATGCAAGAGATGC		58	16520754	16520773	GATCGTGATTGAGCTTACAG		58	NA	
Drosophila melanogaster	50	eIF-2alpha	FBgn0004925	FBtr0074300	1	1	1	66	X	16339861	16339879	TTTAAAGGCTCTGGAGGTG		59	16339813	16339831	GAACTCTCCATCGTACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9281	FBgn0030672	FBtr0074057,FBtr0074056	2	2	2	81	X	15601693	15601779	TGATTATGGTTCAGAACGTG		57	15601631	15601649	AGATCAATTCCGAACTCCA		58	NA	
Drosophila melanogaster	50	CG9213	FBgn0030655	FBtr0074071	2	1	1	108	X	15466547	15466565	GATTTCCGGCTAACTTTGC		59	15466393	15466411	GATTTCACCTTTCCGATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Flo-2	FBgn0024753	FBtr0073951,FBtr0073949	3	2	6	124	X	14818434	14819687	CAAGATCATGAAGTCATCTTCG		59	14820853	14820871	GGATCGTCTGCTTGATCTC		59	NA	
Drosophila melanogaster	50	CG9400	FBgn0030562	FBtr0073920,FBtr0112982	2	2	2	60	X	14182364	14182383	CAATGATTTAGACAGCGAGG		58	14182323	14182344	GGGTATATTGTTGTCCAAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1640	FBgn0030478	FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769	2	6	6	83	X	13268114	13268132	ATTCAACCGTTAGACGTCC		59	13268315	13268334	TATGTTATCCAGTGTGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4645	FBgn0030435	FBtr0073692	3	1	1	143	X	12805133	12805450	TTCTCTGGGTGATCAATATCTC		59	12805554	12805572	TCAGGATTCCAACGATGAG		59	NA	
Drosophila melanogaster	50	Cpr11A	FBgn0030394	FBtr0073650	2	1	1	158	X	12381932	12381950	TTCAAGTACAATCCCAGCG		59	12382072	12382365	GTTCTGGGTCTTCAGTTCC		59	NA	
Drosophila melanogaster	50	CG1924	FBgn0030377	FBtr0073634	3	1	1	60	X	12072506	12072524	CGAGGACGTTGATGTAGAG		59	12072464	12072485	CTTATAGGTAGGCTTCTCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Upf1	FBgn0030354	FBtr0073596	3	1	1	88	X	11795423	11795441	GACTTTGGGCAAATATCGC		59	11795284	11795302	GAGAACTGATTCAAGCTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	SelG	FBgn0030350	FBtr0073570	1	1	1	169	X	11781587	11781668	GCCATTAAGCAGCTATTCC		58	11781801	11781819	CTTAGTCCACCTGATCCTG		58	NA	
Drosophila melanogaster	50	CG2446	FBgn0030328	FBtr0073615,FBtr0073618,FBtr0073619,FBtr0073617,FBtr0073616	2	5	5	195	X	11606950	11606968	CAATGATCTCAGTCCCGAG		59	11606371	11606389	CTCCGATTCTGTAGCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sk1	FBgn0030300	FBtr0073497,FBtr0073498	3	2	2	60	X	11339337	11339355	ATCTACCTGGTGATCATCC		57	11339379	11339397	TCAGCATGAAATTGAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kap3	FBgn0028421	FBtr0112931,FBtr0112934,FBtr0112933,FBtr0112932,FBtr0073459	3	5	5	175	X	11231085	11231169	GCAATATAAGATTGGATCGCTG		59	11230931	11230949	TGATGTCCAGGAAATCGTC		59	NA	
Drosophila melanogaster	50	CG2061	FBgn0027498	FBtr0073429,FBtr0073430,FBtr0073431	2	3	3	60	X	10987593	10987614	CTATTGGCTAAACGATGTACTG		58	10987635	10987653	TATGGATACCAGGTCATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11203	FBgn0030249	FBtr0073385,FBtr0112978	1	2	2	185	X	10811066	10811140	TAATCATTCCACAGGAGTGC		59	10811285	10811306	AGGATAGATCGTCCTTATTTCC		58	NA	
Drosophila melanogaster	50	ras	FBgn0003204	FBtr0071496,FBtr0071494,FBtr0071495	3	3	3	90	X	10641989	10642007	CTACCCTATTTGGAGTGCG		59	10642057	10642150	GGCCATTATAGATCATATCCCTC		59	NA	
Drosophila melanogaster	50	l(1)G0232	FBgn0028341	FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407	1	6	6	83	X	9524045	9524065	CCGTCGGATTATATTAATGCG		59	9523917	9524001	CTTTGGTAATGGACCTTGAG		58	NA	
Drosophila melanogaster	50	CG32699	FBgn0052699	FBtr0110850,FBtr0071369	2	2	2	130	X	9468297	9468392	ATGGACCTGGAGTATTACG		58	9468185	9468204	ATTGTTGGCATACAGATTGG		58	NA	
Drosophila melanogaster	50	CG15369	FBgn0030105	FBtr0071309	1	1	1	61	X	9111319	9111337	GTATCCAGGTGACCTTCAG		59	9111362	9111380	TTAAGCATCGTGTTTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0071296,FBtr0112965,FBtr0071294,FBtr0071298,FBtr0071295,FBtr0071297	3	6	6	107	X	9009733	9009804	AATGTAGTAGTGCCTCCAC		58	9009875	9009893	CATATAGATGCGCATGCAG		58	NA	
Drosophila melanogaster	50	sni	FBgn0030026	FBtr0071183	1	1	1	60	X	8136242	8136263	CTCGAACATACACATACTTGAG		58	8136142	8136160	GACTAGCTTGTCATAGGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32720	FBgn0052720	FBtr0071082	1	1	1	110	X	7428105	7429632	CAAATCGCTGGTTTGTCTG		59	7427254	7427272	AACAGAAGGAACCAGAAGC		59	NA	
Drosophila melanogaster	50	CG1999	FBgn0029947	FBtr0071054	3	1	1	60	X	7253548	7253566	TGAAATATCCCGTGAGGTG		59	7253590	7253608	GCGTTTATATGTCCTGACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17717	FBgn0029877	FBtr0070944,FBtr0070943	3	2	2	87	X	6484217	6484235	TGATTGTGAAGCATCTGCT		59	6484350	6484369	ATATTATCCATGCACTGCAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG34417	FBgn0085446	FBtr0112705,FBtr0112704	3	2	5	86	X	6481126	6482107	CAGGAATATGAGAACGTCCA		59	6482155	6482174	CAAGAAATGGTGTATCAGCG		59	NA	
Drosophila melanogaster	50	CG4766	FBgn0027546	FBtr0070891	3	1	1	186	X	5893075	5893094	GATCTTCTGTCCAAGGAGAG		59	5892784	5892802	GATTGCCTGGTAAATCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15765	FBgn0029814	FBtr0070817	1	1	1	186	X	5728500	5730078	CAATCTAGTGACGGTCGAC		59	5730802	5730820	CATCAGTGGTAGGGATTCG		59	NA	
Drosophila melanogaster	50	CG12693	FBgn0029705	FBtr0070654	1	1	1	81	X	4221588	4221671	CTGATTCACCTGGAGATAAGG		59	4221527	4221545	GACTCGAAACCTCCTTCTG		59	NA	
Drosophila melanogaster	50	CG15572	FBgn0029702	FBtr0070647	2	1	1	60	X	4163387	4163408	TGTGAATCTGGGAGTTAATCTG		59	4163426	4163447	GCTGGTACTATTGGTAATACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mnt	FBgn0023215	FBtr0070580,FBtr0070579,FBtr0070578	1	3	3	121	X	3593201	3593219	GAAGGAGTGCTATGACCTG		59	3593301	3593387	CTTCATGACTCAAGGAATTGAC		59	NA	
Drosophila melanogaster	50	ng3	FBgn0010295	FBtr0070539	2	1	1	60	X	3135856	3135876	AGAGGACGTATCACTATACAC		58	3135816	3135837	CTATAGATATGTCGTATCCGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kirre	FBgn0028369	FBtr0070560,FBtr0070559	3	2	2	67	X	3024318	3024336	AATGACCGGAGACTTTACC		58	3024435	3024454	CTATGGCATCGTGATATTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3526	FBgn0040355	FBtr0070546,FBtr0113325	1	2	2	60	X	2787336	2787357	ACAATAGGATGACCTTCTATCG		59	2787377	2787396	GAGCAAAGATCATAGTCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	w	FBgn0003996	FBtr0070490	3	1	1	156	X	2685364	2685454	CGATAAATGTGTTCACCTCAG		59	2685228	2685246	ATCATCGGATAGGCAATCG		59	NA	
Drosophila melanogaster	50	CG11596	FBgn0023522	FBtr0070319,FBtr0070318,FBtr0070320	3	3	3	63	X	1823153	1823173	GTATAAACCGATCATCGACAG		58	1823198	1823289	ATCCTTCAGCTCGAAATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	br	FBgn0000210	FBtr0070265	1	1	7	132	X	1531146	1531164	CCAATATCGATCCCTCAGC		59	1552857	1552875	GATGAGGTAGAACTGGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40867	FBgn0085529	FBtr0113942	3	1	1	201	U	9327270	9327288	CAATCCCATTGGATACTGG		57	9327087	9327105	TTTGCCTTGTATCACAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40992	FBgn0085550	FBtr0113963	3	1	1	60	U	5052775	5052793	TCTGTATGTTTGAGGTCGG		58	5052733	5052752	GTCGATATACAACAGTCCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40801	FBgn0085520	FBtr0113933	2	1	1	60	U	2929875	2929893	CTGCTGTAAACAAGAAGGC		59	2929759	2929777	ACCTTGCCGAGTTTATAGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41524	FBgn0085668	FBtr0114115	2	1	1	112	U	2873653	2873672	TTACACTTTCCACATTTCGC		59	2873170	2873578	AGAGAAACGGTTTACAGGA		58	NA	
Drosophila melanogaster	50	CG40275	FBgn0058275	FBtr0113858	3	1	2	83	U	1839079	1839097	TAGTGTTGTTGGTGCTACG		59	1839144	1840678	TCATTATGTGATCGCTCGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG40269	FBgn0058269	FBtr0114296	3	1	1	73	U	395321	395339	TCAAAGATGGTCCTATGCC		59	395266	395286	CCGAGATTAGGATGTTATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32016	FBgn0052016	FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232	1	6	6	82	4	974520	974659	GCACTACTCTCAAGAATTGC		58	974457	974475	GAGTTGGAGAGTTACCGTG		59	NA	
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	3	8	8	80	4	671648	672941	TAACAGCACAGATTGATGGT		59	671587	671605	TCAAATACGGGTGAAAGCT		59	NA	
Drosophila melanogaster	50	Asator	FBgn0039908	FBtr0089107	1	1	3	80	4	502324	508432	TACGAGTAGAGGAAACGAC		58	502262	502281	TGATCTTGTTTGGAAGAAGG		57	NA	
Drosophila melanogaster	50	CR33328	FBgn0053328	FBtr0082858	3	1	1	65	3R	9464149	9464167	TATATTCGCGACAGACCAC		59	9464102	9464120	ATTACAAGGCTGGTCAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1815	FBgn0039863	FBtr0085823	2	1	3	254	3R	27501092	27501186	ACGATCCAAAGGGTATACC		58	27501404	27501422	CTACCATGTTGGATCGGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31002	FBgn0051002	FBtr0085813	2	1	1	60	3R	27219703	27219721	TGGTCCTCAACATAAAGCA		58	27219661	27219681	AGCAGCCGTATAATTGTAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gycbeta100B	FBgn0013973	FBtr0085753	1	1	1	84	3R	26984104	26996735	GAAGAAACCTATCGGCTCC		59	26996783	26996801	CCTTCATGATAACGGGTCC		59	NA	
Drosophila melanogaster	50	CG12069	FBgn0039796	FBtr0085728	2	1	1	82	3R	26520393	26520479	GATTTGCCAAGAAAGTGGA		58	26520329	26520349	CTTCGATTGGATAATCTCTGG		57	NA	
Drosophila melanogaster	50	CG7802	FBgn0039704	FBtr0085486,FBtr0085485	3	2	2	80	3R	25648409	25648428	AGCATCTACTACGACAATGC		59	25648471	25648554	CGAGAAGACGTATCCTGTC		59	NA	
Drosophila melanogaster	50	Ef1gamma	FBgn0029176	FBtr0085392,FBtr0085393	2	2	2	191	3R	25046027	25046167	AGGAACTCTGTACACTTACC		58	25046384	25046402	CTCAAGTACTGTCCTTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	2	8	8	121	3R	24962130	24962213	ACCAATGATAAGCCCTACTC		58	24962294	24962315	CCCATGAACATATAGGTTTCAC		58	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085377	1	1	8	100	3R	24959596	24959614	TAAACCAAACGACCGAGTC		59	24959678	24960291	TTTCTCCATGTAACCGAGC		59	NA	
Drosophila melanogaster	50	CG11880	FBgn0039637	FBtr0085373,FBtr0085372,FBtr0085371	2	3	3	74	3R	24951436	24951454	ATCACTGGATGTGACACTC		58	24951561	24951579	CTTCATAGTGTCCCAGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11873	FBgn0039633	FBtr0085365	2	1	1	94	3R	24929963	24930045	CTAATCAGGTATCATTGCATGC		59	24930100	24930118	TTGTCCTGGAATTCCAGAG		58	NA	
Drosophila melanogaster	50	CG9988	FBgn0039591	FBtr0085305	2	1	1	80	3R	24462887	24462905	GTAGAACTATGCCGAAGGT		58	24462946	24463022	TGTCGCCTATCTTATTGTATCC		59	NA	
Drosophila melanogaster	50	Mes-4	FBgn0039559	FBtr0085267	2	1	1	122	3R	23761874	23761892	GGACAAAGGTTGTCATCTG		58	23761702	23761789	GCCTATTAAGAGTGACAACG		58	NA	
Drosophila melanogaster	50	btz	FBgn0045862	FBtr0085220,FBtr0085221	2	2	2	60	3R	23528130	23528148	GTACTATGTGACCGGAACG		59	23528172	23528190	ATTAACATACGGTGCCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31055	FBgn0051055	FBtr0085244,FBtr0085242	1	2	3	124	3R	23512758	23512776	ATGACACCCAATTTGTCGA		59	23512282	23512671	TTGCCGAATCTTACAATCCT		59	NA	
Drosophila melanogaster	50	CG5938	FBgn0046247	FBtr0085161,FBtr0113355,FBtr0085162,FBtr0085159,FBtr0085160	3	5	5	263	3R	23101495	23102020	GCAACATGACGGTATTTGG		59	23102313	23102331	TGTTCTCCCATTCGAACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5938	FBgn0046247	FBtr0085161,FBtr0113355,FBtr0085162,FBtr0085159,FBtr0085160	1	5	5	252	3R	23101506	23102031	GTATTTGGGCTAAGCAACC		58	23102313	23102331	TGTTCTCCCATTCGAACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nep5	FBgn0039478	FBtr0085148,FBtr0113296,FBtr0085147	1	3	3	104	3R	22886399	22886420	CCTTATCATAGGATTCGATGTC		57	22886254	22886334	TCGTTGTTGAAAGGAAACG		58	NA	
Drosophila melanogaster	50	BM-40-SPARC	FBgn0026562	FBtr0085094	1	1	1	80	3R	22695845	22695927	GGAGAAGAACAAGATCAAGGA		59	22695785	22695803	TTGAGTAGATTGTGCTGCA		59	NA	Nonspecific
Drosophila melanogaster	50	Lerp	FBgn0051072	FBtr0085097,FBtr0085099,FBtr0114572	1	3	3	85	3R	22674504	22674587	GATGGCAAGATTGAGATTGAC		59	22674439	22674457	GAATAGTCCGTCATTGCCT		59	NA	
Drosophila melanogaster	50	CG14551	FBgn0039408	FBtr0084971	3	1	1	153	3R	21887749	21887767	GGGAGAACCTAAGACTCCT		59	21887302	21887320	TAAATGGTGACCACTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5028	FBgn0039358	FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290	3	5	5	126	3R	21507753	21507830	AACTACGGTGACCATTACG		59	21507919	21507938	CCAGATGGTTCAACATATCG		58	NA	
Drosophila melanogaster	50	jigr1	FBgn0039350	FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887	2	6	6	95	3R	21474753	21474771	GATAGGTCAAACAAGCGGT		59	21474830	21474920	CCTTATACTGGTGGCATCG		59	NA	
Drosophila melanogaster	50	jigr1	FBgn0039350	FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887	2	6	6	95	3R	21474753	21474771	GATAGGTCAAACAAGCGGT		59	21474830	21474920	CCTTATACTGGTGGCATCG		59	NA	
Drosophila melanogaster	50	CG31439	FBgn0051439	FBtr0084845	2	1	1	60	3R	21223728	21223746	TACTACATCTGTCGTCACC		58	21223686	21223704	CGTTGAAGTACCTATCACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31097	FBgn0051097	FBtr0084861	3	1	1	93	3R	21122616	21122637	CAGGACTTTAATGTCCTAACAC		58	21122248	21122562	TTACGGCAAAGAATGTTGG		58	NA	
Drosophila melanogaster	50	CG13658	FBgn0039315	FBtr0084826	1	1	1	180	3R	21114185	21114206	CATCTTCATGGTAATGGATACG		58	21114346	21114430	GGTCATCATGAAGAATTCGT		57	NA	
Drosophila melanogaster	50	CG33096	FBgn0053096	FBtr0114464	1	1	1	113	3R	20924089	20924107	TCTTTGGGTACGACTACTC		58	20924183	20924266	TGATGTTGAATCTGGTTCTC		57	NA	
Drosophila melanogaster	50	CG11820	FBgn0039270	FBtr0084765	1	1	1	62	3R	20891643	20891661	GACTTGTGACCAAACAGTC		58	20891744	20891765	CGGCTATAATCTCTTCTATAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18410	FBgn0039226	FBtr0084741	1	1	1	96	3R	20624871	20624889	TTGGGATTCAAGGACAAGG		59	20624248	20624266	CAATCAATCCCTTGATGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5768	FBgn0039198	FBtr0110867	3	1	2	117	3R	20212411	20212429	GGGTATTACAGCATCTGCA		59	20212190	20212333	TAGCCCATGTTATCTACAACTG		59	NA	
Drosophila melanogaster	50	CG34290	FBgn0085319	FBtr0112486	1	1	1	160	3R	20115194	20115212	ATCGTTGGATTCTATCCGC		59	20114891	20115017	ATTCCGAAAGTTGGATGGT		59	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	2	5	6	82	3R	20045369	20045389	CATGAACATCTACAACGAACC		59	20025659	20045326	GTGGATTCACGGTAAATGAC		58	NA	
Drosophila melanogaster	50	CG18754	FBgn0042106	FBtr0084439	3	1	1	117	3R	19511053	19511071	AACAACAGTACATCAGGGT		58	19511216	19511235	CAATAGACAAATGGGTTGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	orb	FBgn0004882	FBtr0084385,FBtr0084384,FBtr0100227	1	3	5	125	3R	19094013	19094120	TTCACCTTTAGTCAGCGAC		59	19093906	19093924	AAACTGGTGTAACCTTGCT		59	NA	
Drosophila melanogaster	50	orb	FBgn0004882	FBtr0100228,FBtr0084386,FBtr0084385,FBtr0084384,FBtr0100227	1	5	5	80	3R	19092492	19092510	TGGATGATTCTCACTGTGG		58	19092375	19092450	GAATGACTTCAACATCCTTGG		59	NA	
Drosophila melanogaster	50	HP1c	FBgn0039019	FBtr0084309	1	1	1	79	3R	18571593	18571611	TCCAGAAATTCGAGGAGTC		58	18571654	18571672	CAGCTTCTGGATCTCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dph5	FBgn0024558	FBtr0084280	3	1	1	61	3R	18408774	18408792	CAAGGGTCTGGAGATAGTG		58	18408731	18408750	GAATCGAGGTGTACATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5278	FBgn0038986	FBtr0084281	3	1	1	109	3R	18385411	18385431	CGTGCACATTATCATGTACTC		59	18384981	18385340	AGAACTGGATCATCTGCAG		59	NA	
Drosophila melanogaster	50	oa2	FBgn0038980	FBtr0100322,FBtr0084260	3	2	2	93	3R	18340440	18340751	TCTTCCTCTGGTACATCGT		59	18340808	18340826	GAGTTGAAGTAGCCGATCC		59	NA	
Drosophila melanogaster	50	CG5376	FBgn0038977	FBtr0084292	1	1	1	75	3R	18313859	18313940	TATTCAAGGATCTTAAGTCCGC		59	18313805	18313823	TATTTCTTGGCTTCTGCCA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG5874	FBgn0038872	FBtr0084051	3	1	1	82	3R	17054078	17054159	CTCTATCGAACGAACACGT		59	17054205	17054223	GATAAGGGCTTTGTCAGGT		59	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0110938,FBtr0110939,FBtr0084021,FBtr0084022	3	4	12	131	3R	17027123	17027417	TATATGGTAGCATGCGTCG		59	17027512	17027530	AATACTGATGGTCCGTCTG		58	NA	
Drosophila melanogaster	50	RpS30	FBgn0038834	FBtr0083969,FBtr0083970	3	2	2	89	3R	16676605	16676623	TGGACTAGAGACCATCGAG		59	16676763	16676781	TTGAATCCATGGATCTGGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5466	FBgn0038815	FBtr0083913	1	1	1	65	3R	16445309	16445327	GTTGGACCAGATTACCCAC		59	16445586	16445607	GATTCTATTGAGTCCAGATTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10889	FBgn0038769	FBtr0083839	2	1	1	60	3R	15861225	15861243	GACACATCGTAATCGATGG		58	15861183	15861203	GAGAATACTAGATTGTTGCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11391	FBgn0038732	FBtr0083789	3	1	1	60	3R	15605390	15605408	GACTCATTACCCTGGTCAC		59	15605432	15605450	ATTTCACTGGAAATCAGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sqz	FBgn0010768	FBtr0083733	1	1	1	167	3R	14993956	14993974	AACAGCAAATGGTCATGGA		59	14994105	14994303	GATTCGGGTCGTACTTCTG		59	NA	
Drosophila melanogaster	50	CG7998	FBgn0038587	FBtr0083563	3	1	1	152	3R	14053482	14053500	CGATGATCTGTTCAACGTG		58	14053615	14053692	TAAACACCAGCCTTCTTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	beat-IIa	FBgn0038498	FBtr0083453	3	1	1	193	3R	13153084	13156753	CATGCAAGTTGTTGAACTG		57	13147181	13147199	TCAGATTATCAATGGTGCG		57	NA	
Drosophila melanogaster	50	CG5265	FBgn0038486	FBtr0083407	1	1	1	60	3R	12965371	12965390	CAACAGTCAGTTTGGAAAGG		59	12965413	12965431	ATCGTCGGTAAACCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3983	FBgn0038473	FBtr0083426,FBtr0083425	3	2	2	80	3R	12897405	12897425	CAAGAGCTCCATCATAAACTC		58	12897283	12897363	TGCATTGATTTGGTCACTC		58	NA	
Drosophila melanogaster	50	Actn3	FBgn0015008	FBtr0083380	3	1	1	60	3R	12803013	12803032	GGCCTTGAAATCTCTTTCAG		58	12802972	12802992	TGTAGTGGTACAAGATGACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	srp	FBgn0003507	FBtr0083216,FBtr0083215,FBtr0100595	3	3	3	90	3R	11827967	11827986	ATGGAAAGTGGTTCATTGGT		59	11828036	11828140	GTGGTTTCATATCGTCATTGAC		59	NA	
Drosophila melanogaster	50	CG5516	FBgn0038389	FBtr0083212	2	1	1	256	3R	11789949	11789967	GACACTGGAGCTATGAGTG		59	11790187	11790205	GTCTGATTCGGATGAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14872	FBgn0038346	FBtr0083156	1	1	2	60	3R	11335250	11335271	CCATACTCAATAACAGTTGGTC		58	11335211	11335229	GAGTTGTTCCAAGGAAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6276	FBgn0038316	FBtr0083123	3	1	1	67	3R	11144889	11144907	ATGACTACGAACAAGAGGC		59	11144840	11144858	CATCTTGTGTAGGTCCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Set	FBgn0014879	FBtr0083062	3	1	1	82	3R	11090604	11090622	AGATAATGATGAGGAGGCA		57	11090668	11090749	ACTTGTCATCCTCATCCTC		58	NA	Nonspecific
Drosophila melanogaster	50	CG3631	FBgn0038268	FBtr0082997,FBtr0114533	2	2	2	153	3R	10707240	10707321	CGATATGACCTATTGCAAATCG		59	10707433	10707453	TCCATTGTCTATAAGCACCAC		59	NA	
Drosophila melanogaster	50	CG14855	FBgn0038260	FBtr0082991	2	1	1	120	3R	10622830	10622851	GATTTCTCAACCATATTCGCTG		59	10622929	10623010	GTGAAACGTATTCGAGAATCAG		59	NA	
Drosophila melanogaster	50	CG10097	FBgn0038033	FBtr0100525,FBtr0100524	3	2	2	110	3R	8220864	8220882	TATACCTACACCAAGGCAC		58	8220676	8220694	CACTGGTTCTTTGAACGTG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG4860	FBgn0037999	FBtr0082623	3	1	1	145	3R	8046859	8046877	GAACTCGGTCTCATGTCAG		59	8046602	8046621	CCCAGGTACAGGTTATTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ugt35a	FBgn0026315	FBtr0082374	1	1	1	60	3R	6997411	6997429	CCTTAGCAAAGGAACTGTC		58	6997369	6997392	GAGAAATAGATTACTCCCTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Adk3	FBgn0042094	FBtr0082331,FBtr0082330	3	2	2	70	3R	6713947	6713966	GAATTGATCTGCAAGAACCA		58	6713896	6713914	TTTATGATGTTCTGGCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rbp1	FBgn0010252	FBtr0082278,FBtr0082277,FBtr0082276,FBtr0082275	3	4	4	76	3R	6610338	6610356	TATAGGGAGTGGGACTTGG		59	6610396	6610414	CCTTCTATCTCGTGCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12950	FBgn0037736	FBtr0082170	2	1	1	80	3R	5564291	5564309	TTATAGATGTCGCGTGGAC		59	5564099	5564248	TGTTTGGGTGGAGATATGAC		59	NA	
Drosophila melanogaster	50	AP-47	FBgn0024833	FBtr0082114	3	1	1	60	3R	5384455	5384473	AAGTATCGCAAGAACGAGG		59	5384413	5384431	CGTTTGCGAGAAGATTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8176	FBgn0037702	FBtr0113208,FBtr0113207	2	2	4	102	3R	5348606	5349271	CAATCAAGATCAGACACAACAG		59	5349333	5349352	GTTCAATTGCTTCTTCCCAG		59	NA	
Drosophila melanogaster	50	RhoL	FBgn0014380	FBtr0082124	3	1	1	61	3R	5323516	5323611	CTATCCCAGTACCAACTGC		59	5323473	5323492	TTTCGAATGAGGTCCTACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	ps	FBgn0026188	FBtr0082038,FBtr0111031,FBtr0111029,FBtr0111030,FBtr0082037,FBtr0111028,FBtr0111027	3	7	9	272	3R	5269787	5270772	ATATTCATCATGGCGAGAC		57	5271075	5271093	TATCGACGATCTTGTTGGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11984	FBgn0037655	FBtr0082008,FBtr0082009,FBtr0082007	2	3	3	163	3R	4837857	4837875	CATTGCGGAACTGTTATCG		59	4837617	4837636	ATGTTGAGACTATGGGATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dhod	FBgn0000447	FBtr0081890,FBtr0081891,FBtr0081889	2	3	3	60	3R	4478123	4478141	ATTCGATAAGAACGCGGAG		59	4478081	4478105	CTCTATAAATCCGAATCCTAGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11718	FBgn0037585	FBtr0081852	1	1	1	95	3R	4192157	4193214	ATCAGAAATCGAGTTCCCAG		59	4192081	4192099	GATAGTGCTCGTGGAACTC		59	NA	
Drosophila melanogaster	50	CG11672	FBgn0037563	FBtr0081865	3	1	1	60	3R	4116102	4116124	GAGACAGAGACTACAAACTATGG		59	4116064	4116082	CAATCTCTGCCAGATTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Est10	FBgn0015569	FBtr0081557	2	1	1	87	3R	3313167	3313247	ATTCTATCCAGAGGTTTCAAGG		59	3313101	3313119	GTTAAGACCGAGATCGCTC		59	NA	
Drosophila melanogaster	50	sas	FBgn0002306	FBtr0081571,FBtr0081570	3	2	2	113	3R	3008658	3008676	AGACGAGTTCATCAAACGG		59	3008750	3008839	CGCCATTTACAGATTCATAGTC		59	NA	InUTR
Drosophila melanogaster	50	Sas-4	FBgn0011020	FBtr0081569	3	1	1	60	3R	2977966	2977984	TGTAAGCATATTCGAGCTG		57	2978005	2978026	GGAGTTCATATCAATGTTTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1104	FBgn0037467	FBtr0081643,FBtr0081644	2	2	2	138	3R	2897573	2897645	GTATCACGATTTGGTCCTG		57	2897453	2897471	CTTAGAAATCGATGCACGT		57	NA	
Drosophila melanogaster	50	Pak	FBgn0014001	FBtr0081714,FBtr0114607,FBtr0081715,FBtr0081716	2	4	4	85	3R	2184960	2184978	ATTTCAGGACTTCCTCGAC		58	2185026	2185116	TTAGGAAGGGATGCTTTAGC		59	NA	
Drosophila melanogaster	50	Gasp	FBgn0026077	FBtr0078619	2	1	2	144	3R	1920000	1920018	GCACAGTGTTCAAGATTGG		59	1919322	1919340	CCTTCACTGTTCAGTCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1213	FBgn0037387	FBtr0078643,FBtr0078642,FBtr0078644	2	3	3	64	3R	1671125	1671143	GATGCAGCTCTTCATTGTG		59	1671242	1671261	GGTATGAAACATACGGTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1208	FBgn0037386	FBtr0113197,FBtr0113196	1	2	2	117	3R	1662757	1662830	TTTAATTGGTATCGCAACGG		58	1662910	1662928	AATCGTAAGGAGCAACTGG		59	NA	
Drosophila melanogaster	50	sec8	FBgn0086685	FBtr0078677	3	1	1	167	3R	1581264	1581282	CCTCCAATTATCTGGAGCA		58	1581047	1581133	TGAGTATTTCGTCTGGCTC		59	NA	
Drosophila melanogaster	50	CG31547	FBgn0051547	FBtr0078765,FBtr0078764	2	2	2	136	3R	1317155	1317277	AATATAATACCGGTGCGGG		59	1317037	1317055	GCATTTATTCCGTCCTCCA		59	NA	
Drosophila melanogaster	50	CG2663	FBgn0037323	FBtr0078795,FBtr0078796	3	2	2	193	3R	1227160	1227241	TACTGGACTATGTGCACTG		58	1226985	1227003	GTCCAGGATGAAGATGTCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG9809	FBgn0037248	FBtr0078946	1	1	3	90	3R	249511	249531	CATAGAGACTCGCAAATAAGC		58	249378	249459	CAGCATTATCCAAGTCAGC		58	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113343	2	1	15	193	3R	111913	120842	TTAAAGTTCACCGCTTCTG		57	120999	121298	GATGTTGTACTTATCGCGA		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	nAcRalpha-80B	FBgn0037212	FBtr0113189,FBtr0089255	1	2	2	80	3L	23262560	23262578	ATATCGATCGACTCGTGTC		58	23262622	23271328	ATTCGCCGTAATGTTTCCT		59	NA	
Drosophila melanogaster	50	CG33771	FBgn0053771	FBtr0091772	1	1	1	60	3L	22642928	22642946	ACTACTACATGCACGACTG		59	22642968	22642988	CCAGGAATAAGAAACTTGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32446	FBgn0052446	FBtr0078426	1	1	1	83	3L	21634395	21634413	ATTCAAGGTGGAGATGACC		58	21634460	21635089	ACTTTCTCGACCTTATCGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG32441	FBgn0052441	FBtr0078375,FBtr0078376	2	2	2	224	3L	21568000	21568333	GACTTGCTGAAGAAACTGG		58	21568521	21568539	CTGGGTGCACTCTATAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	capaR	FBgn0037100	FBtr0078379	3	1	1	80	3L	21552986	21553083	TTCATTCTGTTCACGTCAG		57	21552924	21552942	TTATCAGCACCCTATTTGC		57	NA	
Drosophila melanogaster	50	Hr78	FBgn0015239	FBtr0078392,FBtr0078390,FBtr0078389	1	3	4	91	3L	21488964	21489534	CATGCGAAGTGATTCTGTG		59	21488891	21488909	CAGAAGTGGATGAGCTACC		59	NA	
Drosophila melanogaster	50	CG33288	FBgn0053288	FBtr0078347	3	1	1	110	3L	21423143	21423161	TTTATGACAGTCCAAGCGG		59	21423296	21423314	GTCTGCCTCTAGTTCTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr78Cb	FBgn0037068	FBtr0078337	2	1	1	68	3L	21288921	21288939	CCTTCAAGACCAGTAATGG		57	21288970	21288989	TATAGATGCCAATGGTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	park	FBgn0041100	FBtr0078318,FBtr0078319	2	2	2	129	3L	21189207	21189300	CGATGAAGAAAGAGTCCGT		59	21189096	21189115	ATCACGATGGACAGTAAAGG		59	NA	
Drosophila melanogaster	50	CG10587	FBgn0037039	FBtr0078333	2	1	1	60	3L	20955221	20955242	CCATATTACGGCTAAAGAAACC		59	20955182	20955200	TTGCACAATATCAGCTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HLH106	FBgn0015234	FBtr0074873,FBtr0074875,FBtr0074874	1	3	3	102	3L	19790266	19790285	GTCTTCACGTACGATCTGAG		59	19790347	19790437	CTCGATATTGCTTAATGACGTG		59	NA	
Drosophila melanogaster	50	CG8765	FBgn0036900	FBtr0089598,FBtr0089597	2	2	2	123	3L	19678984	19679068	AAAGAAGTCGGTGAAACAG		57	19678879	19678897	ATTATAGTGCTTCCAACGC		57	NA	
Drosophila melanogaster	50	Chd3	FBgn0023395	FBtr0074998	1	1	1	60	3L	19441039	19441058	CTACGGTCCAGTAATAAGGG		58	19441080	19441099	TATTCAGGTCTATTGTGGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cat	FBgn0000261	FBtr0075058	2	1	1	106	3L	18820344	18820459	AACTACTTTGCTGAGGTGG		59	18820529	18820547	GAGTAGGAGAACAGACGAC		58	NA	
Drosophila melanogaster	50	Nufip	FBgn0036812	FBtr0075088	1	1	1	99	3L	18740913	18740931	AAGAAAGTTTGGTCCGAGG		59	18740775	18740793	CCTTGGCTAATCTAGCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18233	FBgn0036795	FBtr0075103	2	1	1	101	3L	18599110	18599128	GGACTTCTTCAAAGGACAG		57	18599277	18599295	AAGTGATCGCTTAAACTCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9674	FBgn0036663	FBtr0075341,FBtr0075344	2	2	4	88	3L	16785600	16785618	TAAGAATGCCGGATTACCC		59	16784780	16785548	GAACAATCACACGTGATCG		59	NA	
Drosophila melanogaster	50	CG32164	FBgn0042177	FBtr0075313	1	1	1	75	3L	16597755	16597773	CAGAAACTACTACAGCCCA		58	16597811	16597889	AATCATCGTCTTCCTTGAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13055	FBgn0036583	FBtr0075482	1	1	1	158	3L	16245038	16245056	AACAACAAACTGGATGTGG		58	16244898	16244916	GTGAACTAGGTCATCCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf4	FBgn0010280	FBtr0114589	1	1	5	188	3L	16107926	16108769	ACCAAGACCATCAATCAGG		59	16108918	16109140	TAAAGTTATCGATGGACTCTGC		59	NA	
Drosophila melanogaster	50	CG5222	FBgn0036570	FBtr0075495	3	1	1	103	3L	16097460	16097479	ATAACCATGTGTTCTCCGAG		59	16097319	16097337	GATAAAGTGAACAGCGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	mRpS31	FBgn0036557	FBtr0075519	3	1	1	141	3L	15998823	15998841	ACAGAGTCTGAGCTATTGG		58	15998945	15999030	TGCCCACGATAATATCACTC		59	NA	
Drosophila melanogaster	50	CG7304	FBgn0036527	FBtr0075577,FBtr0075576	3	2	2	60	3L	15673576	15673595	GAAAGACGAGGAATGTACGA		59	15673618	15673636	TCGCTCTAGATAAAGGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13455	FBgn0036498	FBtr0075544	1	1	1	96	3L	15490337	15490355	CTGTACGACTCCATCAGTC		59	15490483	15490501	TTTCCCTCTTGGCTAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17177	FBgn0036440	FBtr0075710	1	1	1	60	3L	14694698	14694716	GGAAATAGATCTGTGCGAG		57	14694656	14694677	CTTTAACTGCTTATCACTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bbg	FBgn0036425	FBtr0075726	1	1	1	60	3L	14501183	14501202	GTATAATTGTCGGTGTGGAG		58	14501142	14501160	AAGTTGATAATTGGCTGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34244	FBgn0085273	FBtr0112438	3	1	1	61	3L	14228587	14228605	CAATAGCCTGAGCATTGAC		58	14228544	14228563	AATTATCCTCGGTCACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6833	FBgn0036405	FBtr0075774	3	1	1	62	3L	14045081	14045100	CATGACATTCGTGATACGTC		58	14045123	14045143	CGTGTGGGTATTAGAGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	blue	FBgn0041161	FBtr0075781	2	1	1	82	3L	14040887	14040963	GATGACTAATGTGCGTTCC		58	14040823	14040842	CATACTGTTCGATAACGGTG		58	NA	
Drosophila melanogaster	50	CG10743	FBgn0036376	FBtr0075814,FBtr0075813	3	2	2	103	3L	13507881	13507899	CTGCTATGAGGACAATTGC		58	13508025	13508045	GCATCTTTAGGTTTAGCTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10960	FBgn0036316	FBtr0075942,FBtr0075943,FBtr0075941	1	3	3	133	3L	12820168	12820186	GTATCCTGTTCGTCTATGC		57	12819719	12820071	TTTGGAAACCAAGTAGGTG		57	NA	
Drosophila melanogaster	50	CG14131	FBgn0036205	FBtr0076028	3	1	1	98	3L	11771330	11771348	GATACTGCTGTCCATGGAG		59	11771409	11771541	ACTGATGAAGTTGTTCCCTG		59	NA	
Drosophila melanogaster	50	CG12289	FBgn0036160	FBtr0076178,FBtr0076179	1	2	2	60	3L	11451067	11451085	CCACAATTGTCCAAGATCG		58	11451025	11451044	AATGACTTGTCGCAATACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18490	FBgn0036149	FBtr0076167,FBtr0076166	3	2	2	171	3L	11219659	11219744	GATGCGTCAGTAAACAAGC		59	11219876	11219897	CGAAAGGTATTTCATCAACGTC		59	NA	
Drosophila melanogaster	50	CG6216	FBgn0036139	FBtr0076220,FBtr0076221	3	2	2	103	3L	11143173	11143247	AAATGTGTTGTGGCAAGAC		59	11143088	11143106	CTTGTTGGAGGACAAAGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32073	FBgn0052073	FBtr0076230	2	1	1	95	3L	11100392	11100410	GTATTCCGTTGATTGCACC		59	11100315	11100333	GATCCACTGCTACTTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NijA	FBgn0036101	FBtr0089569,FBtr0089570,FBtr0089571	1	3	3	148	3L	10687816	10688131	TATTCCAGATTGCTGTGGG		59	10687686	10687707	GGCTGATATTAGAACATTGACC		58	NA	
Drosophila melanogaster	50	CG14153	FBgn0036094	FBtr0076259	1	1	1	60	3L	10636860	10636879	AATCCAACTATGCCAATCCA		59	10636902	10636920	TTCACTATGATAGGCGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	E(z)	FBgn0000629	FBtr0076279	2	1	1	83	3L	10630672	10630752	GGATAAGAAACTGGGACGA		58	10630607	10630625	GATCGTAGGGTTTAGCCTG		59	NA	
Drosophila melanogaster	50	SH3PX1	FBgn0040475	FBtr0076413	2	1	1	86	3L	9704600	9704620	GGATCGACTTCACATCTACAG		59	9704054	9704072	TCCTTTCGCTTCTGTATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6767	FBgn0036030	FBtr0076416,FBtr0076415	3	2	2	147	3L	9677737	9677755	TGTATGCTATTCTGACGCA		58	9677545	9677626	GAGACATCAATGCACTGGA		59	NA	
Drosophila melanogaster	50	CG8336	FBgn0036020	FBtr0076384,FBtr0076386,FBtr0076385	3	3	3	127	3L	9624224	9624296	CTCGACAAGTTCACAGGAG		59	9624387	9624405	TAGTATCGATTCGCCTTGC		59	NA	
Drosophila melanogaster	50	PGRP-LA	FBgn0035975	FBtr0076432,FBtr0076435	2	2	4	181	3L	9329862	9329880	GATAAGTCGCCATCTAGGC		59	9330025	9330095	AGATTCGGAAACGTTTGGT		59	NA	
Drosophila melanogaster	50	Mcm7	FBgn0020633	FBtr0076585	1	1	1	107	3L	8885793	8885811	CATTGTGGTCTCTGGAGTG		59	8885882	8885967	ATACAGATGATGCGGTGAG		59	NA	
Drosophila melanogaster	50	CG32022	FBgn0052022	FBtr0076597	3	1	1	62	3L	8713836	8713854	AGCGTAAAGTATCAGAGGC		59	8713792	8713810	GCATGAAGTTCTCCATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32351	FBgn0052351	FBtr0076639	3	1	1	105	3L	8614807	8614881	GATGCATATTGATGCCACC		59	8614949	8614968	AATAAACTCGATGAGTGTCC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG15829	FBgn0035743	FBtr0076913	1	1	1	68	3L	7122203	7122221	CTACGGCTACTACAAGCAG		59	7122253	7122271	TTCTTCTCCTCATCTTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10103	FBgn0035715	FBtr0076949	1	1	1	108	3L	6748214	6748528	TTTATCGATCGTGAAGCGA		59	6747859	6747878	GATTAATGGAGGTGTAACGC		58	NA	
Drosophila melanogaster	50	CG32245	FBgn0052245	FBtr0073312	3	1	3	91	3L	4563894	4578763	AAATACGTAGACTTGCGGA		58	4578818	4578836	CATTATCACAAGAGCCACG		58	NA	
Drosophila melanogaster	50	CG11357	FBgn0035558	FBtr0073310,FBtr0113143,FBtr0113142	3	3	3	196	3L	4551753	4551771	AGTGGTTCAACGAGAAGTG		59	4551929	4552113	CCATTTGGAACGATATGAACG		59	NA	
Drosophila melanogaster	50	CG1268	FBgn0035521	FBtr0113137,FBtr0073230,FBtr0113136	1	3	3	97	3L	4262902	4262920	CTCACCAGAATCTGATCCG		59	4262980	4262999	GATCAAGGGATTCATTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0110922,FBtr0073132,FBtr0073135,FBtr0110924,FBtr0073131,FBtr0073134,FBtr0110923,FBtr0110920,FBtr0110925,FBtr0073133,FBtr0110921	2	11	11	118	3L	3552857	3578300	CAGATTAACAATTTCCCGCG		59	3578378	3578399	CGTTGTATGGAACTTTGTTACC		59	NA	
Drosophila melanogaster	50	CG12082	FBgn0035402	FBtr0073114	1	1	1	159	3L	3147627	3147645	ATAAGAAGCTGCCCTATCC		58	3147425	3147443	TTATCTGCGTACTTCGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	msn	FBgn0010909	FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956	3	5	5	104	3L	2556720	2556801	AGCAATAGAGATACGTTCCG		59	2556635	2556654	AATACTTTGTCGTTTCGCTC		58	NA	
Drosophila melanogaster	50	CG13802	FBgn0035330	FBtr0113127,FBtr0072886	3	2	2	60	3L	2299244	2299264	CCTTCTTTCTGCAATGTTACC		59	2299774	2299793	TTAATAAGCGCCAAGATGTC		58	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG8960	FBgn0035315	FBtr0072872,FBtr0072871	2	2	2	245	3L	2197630	2197648	TTCTGCATCATCGAGAACC		59	2197857	2197875	ATTCAGCTTGACTTCAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	zormin	FBgn0052311	FBtr0110858,FBtr0110856	1	2	4	134	3L	2125346	2125364	ATGTTAGCAGGGAGATCAG		58	2124605	2125249	ATTTGGTTCCGTATTGAGAG		57	NA	
Drosophila melanogaster	50	sls	FBgn0086906	FBtr0072849	1	1	2	80	3L	2046155	2046290	TATTTGAACGTCCTGGACC		59	2046093	2046111	CGTCAGGAGTATGAATCGG		59	NA	
Drosophila melanogaster	50	dre4	FBgn0002183	FBtr0072864,FBtr0072865	3	2	2	83	3L	1875341	1875359	ATCGCTAGTGTCAATGGAC		59	1875208	1875295	TGTTTGACTTTCCTATCCGA		58	NA	
Drosophila melanogaster	50	CG33791	FBgn0035240	FBtr0091792,FBtr0091794,FBtr0091795,FBtr0091793	1	4	4	125	3L	1606787	1606805	AAGTTGATCAAGGAGGGAG		58	1606891	1606971	CCAAGAGGAATACTTTATGGTC		58	NA	Nonspecific
Drosophila melanogaster	50	CG7852	FBgn0035229	FBtr0072735,FBtr0072737,FBtr0072736	1	3	3	81	3L	1539065	1539083	AGCATCACGCTGATATGTC		59	1539125	1539209	GTCGAGGAAGACATCTATACAG		59	NA	
Drosophila melanogaster	50	scf	FBgn0025682	FBtr0089942,FBtr0089940,FBtr0089941	2	3	3	60	3L	1299622	1299641	ATGGTTATTTGAACGAGGAG		57	1299664	1299682	GAATGATCGAAGTCATGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13908	FBgn0035178	FBtr0072618,FBtr0113121	2	2	2	60	3L	990114	990132	ACATCCACCAGTATCTGTC		58	990155	990174	TTGGAGTTGTTCAGAATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mth	FBgn0023000	FBtr0072571,FBtr0072570	2	2	2	80	3L	344411	344429	GGACATTCAGAACTTTGCG		59	344284	344369	CGTAGGAAGAAGGTGTAAGTC		59	NA	
Drosophila melanogaster	50	Ptpmeg	FBgn0035133	FBtr0072545,FBtr0072542,FBtr0072544,FBtr0072543	2	4	4	80	3L	354437	354510	ATATCACCATATGACTGCACC		59	354552	354570	CATGTTTACGTAGTTGGCG		59	NA	
Drosophila melanogaster	50	CG7047	FBgn0035103	FBtr0072535,FBtr0072534,FBtr0072536	1	3	3	135	3L	177250	177268	ATAAAGTGCAGAGTGTCCC		59	177067	177152	AATACTCGATGGTCTCAGTG		58	NA	
Drosophila melanogaster	50	p130CAS	FBgn0035101	FBtr0113120,FBtr0072474	2	2	3	102	3L	168759	168777	CAAACTCAAATTCGGGAGG		58	168843	172071	GGTGTGATTACCTTTGTCG		58	NA	
Drosophila melanogaster	50	CR30082	FBgn0050082	FBtr0087321	3	1	1	85	2R	11573082	11573101	TACATTCTTCGGTGGAAGAC		59	11572862	11573035	GTACTTGGCATTTGTAAACG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG30430	FBgn0050430	FBtr0072448	3	1	1	66	2R	21017163	21017181	CTACTACCCTTGCTGTAGC		59	21017211	21017229	ACTATAGAATCCGCATCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3894	FBgn0035059	FBtr0072373,FBtr0072372	2	2	2	135	2R	20650966	20650984	TCGCTTTCATCCATACCAC		59	20651083	20651101	CTCCACCAAGAAGATGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13581	FBgn0035014	FBtr0072300	1	1	1	64	2R	20394819	20394837	TGTTATACTGTGACCAGCC		58	20394865	20394883	GACAGATGGTACAGGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SerT	FBgn0010414	FBtr0072362	1	1	1	122	2R	20294900	20294974	AGTTCTTTGAGCGAAAGGT		59	20294796	20294814	ACAGGGAGAAGTAGACCAG		59	NA	
Drosophila melanogaster	50	CG11406	FBgn0034990	FBtr0100169,FBtr0072276	1	2	2	153	2R	20090339	20093348	TATCCATTGGATCGTAGCA		57	20090044	20090062	CATATCGCAGCGTATTCAG		58	NA	
Drosophila melanogaster	50	yki	FBgn0034970	FBtr0072183,FBtr0072184	2	2	3	156	2R	19953829	19954697	TAAAGCAGAATGAATCTGGG		57	19953609	19953627	TACCATTCCAAATCGTCAG		57	NA	
Drosophila melanogaster	50	TM4SF	FBgn0020372	FBtr0100255,FBtr0072130	1	2	2	139	2R	19767864	19767958	TAGCCATATTCCAGAGCCT		59	19768061	19768079	CTTGTCCTGTATGGTCAGG		59	NA	InUTR
Drosophila melanogaster	50	retn	FBgn0004795	FBtr0072072,FBtr0072073	3	2	2	98	2R	19538521	19538539	TATCAACAAGAAGCTGTGG		57	19538601	19538969	TACTTCATGTATTGGGTGC		57	NA	
Drosophila melanogaster	50	CG13559	FBgn0034870	FBtr0072057	1	1	1	60	2R	19391078	19391096	ATTGGATGCTGGCTAATCC		59	19391120	19391138	GACACGAGTGATGGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13557	FBgn0034867	FBtr0072019	2	1	1	90	2R	19363433	19363451	CCAGATTGGTGTATCCCTG		59	19363361	19363379	TTGGTCTCAATCATTCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30411	FBgn0050411	FBtr0072016	3	1	1	80	2R	19303765	19303783	GAAGATGTTTACCTGACGC		58	19303890	19303908	AATCCGGTAGTTATCGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF2B-delta	FBgn0034858	FBtr0072014,FBtr0072015,FBtr0072013	1	3	3	76	2R	19275710	19275728	CAAGAACCAACTGACACAG		58	19275824	19275842	TATCGATGAAGTGGACGAG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG3732	FBgn0034750	FBtr0071936	2	1	1	76	2R	18527053	18527071	CTAAGTTCTCGGATGTGGA		58	18526939	18526957	ATCCTTGTACTCTACCACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11206	FBgn0034720	FBtr0071846,FBtr0113106,FBtr0071847	2	3	4	145	2R	18222380	18222458	GAAAGGATCTCAGAGCTCC		59	18222253	18222271	TGGTTGCGTATATTCCTCC		59	NA	
Drosophila melanogaster	50	CG3074	FBgn0034709	FBtr0071785,FBtr0071784	1	2	2	153	2R	18079061	18079174	CATCTCCAACACTCTATGCT		59	18078927	18078945	CGTGGTATTGTACTTGCTG		58	NA	
Drosophila melanogaster	50	Tango11	FBgn0050404	FBtr0071746	2	1	2	207	2R	17606590	17606608	ATTCCGTTGAATCGGACTC		59	17605017	17605035	TTGATCTCGATGTTCAGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30403	FBgn0050403	FBtr0114523	2	1	1	60	2R	17598117	17598138	CTACAGATTCGACTTACCAGAC		59	17598078	17598096	GATCTGGCTTAATCTCCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10505	FBgn0034612	FBtr0071619	3	1	1	80	2R	17177151	17177171	ATCTTTAAGGTCTACGGATGG		58	17177020	17177110	CTGGAAGGAATGAATAGCCA		59	NA	
Drosophila melanogaster	50	shg	FBgn0003391	FBtr0071546	1	1	1	60	2R	16938716	16938737	CGAGACGATCATTAATTACGAG		58	16938677	16938695	CAGATCATAGTCCGTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13443	FBgn0034548	FBtr0086239	3	1	1	60	2R	16661665	16661684	ATGCAATTAATGCCTCTGGA		59	16661705	16661725	TCGAGTATAAATTCTCCCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bl	FBgn0015907	FBtr0086221,FBtr0086220	2	2	4	90	2R	16483146	16483164	TTCGCATACTGATTCCGAG		59	16483310	16485063	GTGGCTTTATACTGAGTCCTC		59	NA	
Drosophila melanogaster	50	CG13870	FBgn0034506	FBtr0086287,FBtr0086288	1	2	2	278	2R	16232030	16232160	ATCTTCCTTTCAAATGCCC		57	16232402	16232420	ATTCGGATAACTGGTGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15128	FBgn0034467	FBtr0086481	2	1	1	109	2R	15574057	15574163	CAAGAAGGTTCAGCAATTGG		59	15573967	15573985	ACACCTCGTTAAGGAACTC		58	NA	
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086492,FBtr0100233,FBtr0100232	1	3	7	106	2R	15488466	15488484	AGTCAAATGACGACCTACG		59	15461823	15488397	CAAGACATCAACTGTGATGG		58	NA	
Drosophila melanogaster	50	Elongin-C	FBgn0023211	FBtr0086540	3	1	2	228	2R	15333532	15333550	ACGAATTTGTCGTCAAACG		59	15332774	15332792	AGTTCTAATGCGATCTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Elongin-C	FBgn0023211	FBtr0086540	1	1	2	153	2R	15333532	15333550	ACGAATTTGTCGTCAAACG		59	15332849	15332867	GTGAAGTACATGCAGACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fak56D	FBgn0020440	FBtr0114606	2	1	5	105	2R	15323046	15323108	TTATTTCCCAGGAATCTCGT		58	15322960	15322978	TTCCTTTGGTAAAGTGCAC		58	NA	
Drosophila melanogaster	50	endoB	FBgn0034433	FBtr0086558,FBtr0086559	2	2	4	81	2R	15196010	15196085	CCAATGAGGTGATCTTCGT		59	15195947	15195965	AGACCCTTCAATAGACCCT		59	NA	
Drosophila melanogaster	50	CG14500	FBgn0034318	FBtr0086752	3	1	1	60	2R	14076666	14076684	CATTGTCGATCCCTTAACG		58	14076707	14076726	TGACATTGAATTCCGTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nopo	FBgn0034314	FBtr0086750	1	1	1	86	2R	14069011	14069029	AGGAGATCGAACTAAAGCG		59	14069139	14069212	AAGCTTGTAGCTTCTCCTG		59	NA	
Drosophila melanogaster	50	Sema-1b	FBgn0016059	FBtr0086890,FBtr0086891	3	2	2	107	2R	13565405	13565423	ACAAGACAAAGTCCTAGCC		59	13564084	13565334	TTGTAGATGACGTCCTTGG		58	NA	
Drosophila melanogaster	50	CG4847	FBgn0034229	FBtr0086937,FBtr0086936,FBtr0086934,FBtr0086933,FBtr0086935	3	5	5	68	2R	13400456	13400474	AATTGACCGGTCTGAAGAG		59	13400570	13400589	GGTTGACCAACTTCAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	EDTP	FBgn0027506	FBtr0086958,FBtr0086959	1	2	2	80	2R	13320625	13320704	TCCGAAGAGATCTAGAACCA		59	13320564	13320583	CCATTGGACGATGTAGACTC		59	NA	
Drosophila melanogaster	50	Ark	FBgn0024252	FBtr0086968,FBtr0086967	2	2	2	93	2R	12909214	12909232	CAGGATGTACATCGAGCAG		59	12909289	12909428	TAGCTTCAGATACGGTTGC		59	NA	
Drosophila melanogaster	50	Dek	FBgn0026533	FBtr0100437,FBtr0100438,FBtr0100436	3	3	4	148	2R	12747152	12747173	CGGATATGTCAAAGAGATTCTG		58	12747282	12747364	TCGCAATTAACGCTTTCAC		59	NA	
Drosophila melanogaster	50	CG15615	FBgn0034159	FBtr0087077	3	1	1	91	2R	12681314	12681332	TGCCAGAGAAGAAATTGGA		58	12681182	12681262	CTTCCATTCCAATTTATCGGTC		59	NA	
Drosophila melanogaster	50	CG5522	FBgn0034158	FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026	2	6	6	88	2R	12676160	12676302	CTACACTATAGCAGCCTCG		59	12676354	12676372	AAATAACCGCATCCAACTG		58	NA	
Drosophila melanogaster	50	CG8306	FBgn0034142	FBtr0087120	1	1	1	137	2R	12478090	12478172	TTCGTCCGAGTATGATCAC		58	12477971	12477989	TAATGATGCTGGGATCCAG		58	NA	
Drosophila melanogaster	50	CG4409	FBgn0034128	FBtr0113085	3	1	1	113	2R	12331523	12331541	CTGTACGCCCTATTCTTCG		59	12331618	12332182	CATTGAGTTCTGCAAACCG		59	NA	
Drosophila melanogaster	50	CG15709	FBgn0034100	FBtr0087186	1	1	1	61	2R	12141949	12141967	GCGATTCCAGTTATGTGGA		59	12141744	12141762	AATTGATTTGCAGTAGCGC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG8445	FBgn0034088	FBtr0087246,FBtr0087245	2	2	2	211	2R	12083400	12083418	AAATATGAACGCTGCTGGA		59	12083148	12083225	CCTGTACATCGTGACATCC		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG8389	FBgn0034063	FBtr0087204,FBtr0087205	1	2	2	60	2R	11900093	11900111	TCCATGTCTTCCCTATCAC		58	11900191	11900211	GGTTTAGTGGTTTCAAGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pcf11	FBgn0022063	FBtr0087458	3	1	1	116	2R	10756534	10757568	TATTACATCAGCCAGGTGG		58	10756436	10756454	GTTGACTATGCACTGTCCA		59	NA	
Drosophila melanogaster	50	CG10131	FBgn0033949	FBtr0087499	1	1	1	61	2R	10517518	10517536	GTATGACATCCTGGAGAGC		59	10517561	10517579	GATGCAAATCCTTGTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30077	FBgn0050077	FBtr0087497	2	1	1	83	2R	10489160	10489178	CACTGCCCTAAAGGATCTC		59	10489224	10489243	TCTAGGGTCTGGTTAATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8617	FBgn0033925	FBtr0087561	1	1	1	66	2R	10243737	10243755	GATTTGAGCATCATGAGCG		59	10243689	10243707	TCATTGAAGCTCATTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13349	FBgn0033886	FBtr0087611,FBtr0114495,FBtr0114494,FBtr0087610,FBtr0114493	3	5	5	92	2R	9847383	9847401	GACGATCTCATCGTCTTCC		59	9847309	9847329	CGATGACTTGAACTTAAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shot	FBgn0013733	FBtr0087620,FBtr0087618	2	2	6	145	2R	9770040	9788950	GAACTAGATCAAGCAGTATTCG		58	9769916	9769935	TTAATCTGGTTGCGTAACTC		57	NA	
Drosophila melanogaster	50	CG6197	FBgn0033859	FBtr0087623	3	1	1	179	2R	9483353	9483434	CATTGCTCACAGGTTTGTG		59	9483577	9483595	GTTTGTGCTCAGGAATTGG		59	NA	
Drosophila melanogaster	50	cid	FBgn0040477	FBtr0087667	2	1	1	72	2R	9373778	9373796	TCCTACATGCTAACCAAGC		59	9373832	9373850	AGATGTAGGCCATCAATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30062	FBgn0050062	FBtr0087706	3	1	1	64	2R	9333551	9333569	ACGGACTGTTCCAAATCAG		59	9333505	9333523	TGCATAGTATTCCGTTCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dp	FBgn0011763	FBtr0087740,FBtr0087741	1	2	2	81	2R	9113248	9113323	AAACAGAAGCAGGTACCAC		59	9113368	9113386	AAGGGCAAGTCGTAATGAC		59	NA	
Drosophila melanogaster	50	CG4630	FBgn0033809	FBtr0087765	3	1	1	96	2R	9103760	9104122	ATTCGTTACACTAGGTGCC		59	9103682	9103701	TGTGAACGTGTAGATGACTG		59	NA	
Drosophila melanogaster	50	CG3884	FBgn0033786	FBtr0087799	3	1	2	61	2R	8838237	8838255	GGATACGAATTCCAGAAGC		57	8838194	8838215	TTCATCCATACATATCCGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nmda1	FBgn0013305	FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876	3	6	6	93	2R	8765642	8765662	GACGAACTTCATATTCTTGGG		58	8765511	8765587	CATGAGAACCTCTTTCGGA		58	NA	
Drosophila melanogaster	50	SIP2	FBgn0061197	FBtr0089670,FBtr0089669,FBtr0089671,FBtr0089668	3	4	4	97	2R	8191550	8191640	CAGATAAGCGATCTAAGGGAG		59	8191473	8191491	ATCTTGGACACTTCCTTGC		59	NA	
Drosophila melanogaster	50	CG8964	FBgn0033674	FBtr0088027	3	1	1	133	2R	7911661	7911767	AAATGGATGAGGGAAACCC		59	7911546	7911564	ATTTGACCCTGGCTATTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13190	FBgn0033662	FBtr0088034	2	1	1	130	2R	7774236	7774255	CCAGCACAATCAATCTTCTG		59	7774347	7774435	CAGACCCATTCAATGTTGTG		59	NA	
Drosophila melanogaster	50	Damm	FBgn0033659	FBtr0088061	2	1	1	281	2R	7753255	7753273	AATCCAACCTTATCTGGCA		58	7752914	7753010	AACTTGTTTCGAACCTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG9003	FBgn0033639	FBtr0113069	1	1	4	98	2R	7532456	7538327	GATTCGATCAAACATTCCTAGG		58	7532379	7532397	CATCCAGGTAGGAGAAGAC		58	NA	
Drosophila melanogaster	50	CG13215	FBgn0033592	FBtr0088192	3	1	1	70	2R	7127394	7127412	GATATTACCGGAGAGCCAG		59	7127342	7127360	CAGATGAAATAGTCGCCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf5	FBgn0010356	FBtr0088240	3	1	1	60	2R	6765181	6765202	GGCTTGGATAACAATCTAACTC		58	6765142	6765160	TGCTGATATAGTCTTCGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	3	12	12	93	2R	6499952	6500255	GCATATGGACATGTATAACTCG		58	6500309	6500327	ATTCGTATAGTGCGGTTCC		59	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	1	9	9	149	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349137	6349157	GACAGCATCGAATACAAACTG		59	NA	
Drosophila melanogaster	50	CG11825	FBgn0033519	FBtr0088316	2	1	1	92	2R	6308449	6308467	TCAGGCAAACAAGTTATCC		57	6308375	6308393	TAGGCTCCAATCAAACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1814	FBgn0033426	FBtr0088523,FBtr0088521,FBtr0088522	3	3	3	81	2R	5468497	5468576	AATCTACTACGAGGGTTCG		58	5468620	5468639	ATGATCTCCGAAATAGAGCA		58	NA	
Drosophila melanogaster	50	CG8734	FBgn0033315	FBtr0088728	2	1	1	60	2R	4515044	4515063	TTTCTTCACAGCCATAACTG		58	4515003	4515021	GGAGCTGAGTATCTTTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2127	FBgn0033286	FBtr0088765	3	1	2	85	2R	4257390	4257408	TCAGAAATGTCGTTCCCTC		59	4257323	4257343	ACCAATCGACCTTGAATAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18449	FBgn0033285	FBtr0089732	2	1	1	76	2R	4254893	4254911	TTTATCTCCACCCAAAGCA		58	4254835	4254853	TAGTATCCATCAAACGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8708	FBgn0033271	FBtr0088809	3	1	2	65	2R	4047560	4047580	CTTTACTACAAGACGGATGAC		58	4047462	4047481	TACGTAGTGAAAGGAGATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nup44A	FBgn0033247	FBtr0088862,FBtr0088860,FBtr0088861	1	3	3	75	2R	3878040	3878058	CACTTACATGGTCACCCAG		59	3878192	3878211	GAATAAGAAGACCTTGCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11198	FBgn0033246	FBtr0088871,FBtr0113053,FBtr0088872	3	3	4	199	2R	3872618	3872636	AGCGAAACAAATGAGTCCA		59	3870501	3872392	GACATACTCGGCCTTAACC		59	NA	
Drosophila melanogaster	50	p47	FBgn0033179	FBtr0088997	1	1	1	100	2R	3352768	3352847	TTTCATACAAACTGCACGC		59	3352686	3352704	TCTCGATGGTGGAATTGTC		59	NA	Nonspecific
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111084	2	1	60	158	2R	3249225	3249243	AAGGACGATTGGTCATCAC		59	3236470	3241079	ACTTGTACCATCTAAAGGCG		59	NA	
Drosophila melanogaster	50	Rab2	FBgn0014009	FBtr0086124	1	1	1	60	2R	2585036	2585055	GATCAAGCTTCAAATCTGGG		58	2585078	2585569	AGAGCGTGTGATAGATCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	jing	FBgn0086655	FBtr0114364,FBtr0114363,FBtr0086104,FBtr0114365	2	4	5	186	2R	2506074	2506093	ATGTTTGACTTCTTCGACAC		58	2506242	2506321	ACTCGTCGGAAATGATCTC		59	NA	
Drosophila melanogaster	50	Nipped-A	FBgn0053554	FBtr0113467	3	1	2	81	2R	1082459	1082480	GGGATCGATTTAGTAGAAACTC		58	1081195	1082417	TGGTATGTGATCCCATTCC		58	NA	
Drosophila melanogaster	50	Spf45	FBgn0086683	FBtr0111239,FBtr0111240	3	2	3	160	2L	22960010	22960028	TGACGAAGAATTGGAACCC		59	22959807	22959888	CCACTACAGCTTTAATTGCAC		59	NA	
Drosophila melanogaster	50	CG34173	FBgn0085202	FBtr0112364	3	1	1	82	2L	22054066	22054085	ATTAGAATTGAGGAGCGCTC		59	22054003	22054021	ATAAAGCGGATAAGGGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41433	FBgn0084000	FBtr0111263	2	1	1	134	2L	22028939	22028957	GTCTCATTAGTCTTTGCCG		58	22029055	22035396	TATGAGTGGTATACGCCAC		58	NA	
Drosophila melanogaster	50	CG9246	FBgn0032925	FBtr0081472	1	1	1	60	2L	21164018	21164039	AAGGAAGATACGGTAACTAAGG		59	21164060	21164078	TGTGGTACTTCTCTTCGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	del	FBgn0086251	FBtr0081502	3	1	1	81	2L	21146958	21146977	TGTCGCCAAACAATATAAGG		58	21146842	21146860	TAGTCTTGTGATCTCTGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14401	FBgn0032900	FBtr0081430	1	1	1	134	2L	20870741	20870759	TACCAAGTACCATGAGGGA		59	20870928	20870946	CCGAGGAAGTTCATAAAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG40463	FBgn0058463	FBtr0100162	1	1	1	60	2L	20226427	20226446	TTTCGGTTTCATTGTTTCGG		59	20226469	20226487	TTCGTGATCACAGTACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10462	FBgn0032815	FBtr0100351,FBtr0100352,FBtr0081325	3	3	3	92	2L	19733222	19733240	GACAAACGTTTCCGAACTC		59	19733055	19733167	GTCTAACGAGCATATCTTGC		58	NA	
Drosophila melanogaster	50	CG10348	FBgn0032707	FBtr0081124	1	1	1	60	2L	18715400	18715420	GAACGTTCCTTTAGCATATCC		58	18715360	18715378	CCTTGTTGTGGATATTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4841	FBgn0032622	FBtr0080950	1	1	1	172	2L	16915348	16915431	GATTGATGCTGTGGATCGA		59	16915567	16915585	CAGTCTTGAAATGCAGCTG		59	NA	
Drosophila melanogaster	50	CG13272	FBgn0086673	FBtr0080914	3	1	1	209	2L	16811804	16811822	AGACTTTGGAGACGATTGG		59	16813594	16813613	GATTACTTTGACCAGTGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080898,FBtr0080903,FBtr0080900	3	3	13	98	2L	16779121	16779139	AAGGGTATTGAGGATCCCA		59	16779199	16780558	GAAGAACACCTTTGTGTTACC		59	NA	
Drosophila melanogaster	50	CG17912	FBgn0032600	FBtr0080893,FBtr0113041	2	2	2	175	2L	16744377	16744699	AGCGTACAGTAATGCTACC		59	16744836	16744856	GTGGATGCATAATCTTTGTGG		59	NA	
Drosophila melanogaster	50	CG31738	FBgn0051738	FBtr0080882,FBtr0080881	3	2	2	60	2L	16659041	16659059	CTCAAGATGGTGACTTCCT		58	16659083	16659101	TTGAGGAAACCATGACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycE	FBgn0010382	FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775	3	5	5	98	2L	15729492	15729578	ATACATTTAGTCGGGAGATGG		59	15729414	15729432	AGATCACTCGGAAGAATGG		58	NA	
Drosophila melanogaster	50	CG15256	FBgn0028880	FBtr0080751	1	1	1	134	2L	15555022	15559594	TTGCACAAGTTGATCAACG		59	15559691	15559710	GTTAGTCATGAGGACATCCT		58	NA	
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0100611,FBtr0080709,FBtr0100610	2	3	7	107	2L	15261796	15261814	AATCTACGACGAATCCTCG		58	15258928	15261726	AGTTGTCCGTTAATTTCCAC		58	NA	
Drosophila melanogaster	50	CG16863	FBgn0028931	FBtr0110942,FBtr0080536	2	2	2	60	2L	13792783	13792801	ATCACTACGATATCTGGGC		58	13792824	13792843	TTTACAATCCTTTGCTTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9008	FBgn0028540	FBtr0080577,FBtr0080576	3	2	2	157	2L	13775381	13775399	GAATCCTTGGATCGATCGA		58	13775035	13775262	CCTCGATGATAATCTGAAGGA		58	NA	
Drosophila melanogaster	50	kuz	FBgn0015954	FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660	2	5	5	86	2L	13634171	13634249	CACCTACAGAGATTTCACTG		57	13634298	13634316	TACTTCTCGCAAATTCCAC		57	NA	
Drosophila melanogaster	50	CG31855	FBgn0051855	FBtr0080467	3	1	1	78	2L	13369397	13369415	CAGAATGTCAGTACGAGAC		57	13369457	13369475	ATGTTCGTTGCTCAAATGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG15479	FBgn0032493	FBtr0080481	3	1	1	60	2L	13234573	13234592	GAGCACCATCAGATCTATCG		59	13234532	13234551	CGCATTTCTCAATCTTTCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ACXE	FBgn0040506	FBtr0080416	2	1	1	91	2L	12928710	12928791	TCATATCGTGGATGTGTATCTC		59	12928843	12928861	TTAGCATGGCAAACATGAC		58	NA	
Drosophila melanogaster	50	vir-1	FBgn0043841	FBtr0080391,FBtr0080390,FBtr0080389	3	3	4	106	2L	12407726	12409466	CTCCTTCGATGATCTCTTCC		59	12407639	12407657	TAGAATCATCAGAGTCGCC		58	NA	
Drosophila melanogaster	50	CG34163	FBgn0085192	FBtr0112354	3	1	1	62	2L	11988515	11988533	ACTGAAATCGGGTGTATCC		59	11988559	11988577	TTGAGTCGTTCGATTTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	esc	FBgn0000588	FBtr0080325	3	1	1	227	2L	11828900	11828980	TACAAATACGACACCCACG		59	11828327	11828345	CTTAAGGTCGTACGACCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	sala	FBgn0003313	FBtr0080237	2	1	1	60	2L	11486576	11486596	TGGAACTAATCCAGTTGAGTC		59	11486616	11486636	ATGTTCCGGATATTCATGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33129	FBgn0053129	FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172	2	4	4	117	2L	10966083	10966101	GATCAAGACCACCTGTGAC		59	10965902	10966002	TTGGTCAATGAACTTTGCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17086	FBgn0032310	FBtr0080142	3	1	1	187	2L	10853608	10853627	TACACCTACACATTGGATGG		59	10853777	10853849	CAACTAGTGTCCGGTTCTG		59	NA	
Drosophila melanogaster	50	CG17098	FBgn0032276	FBtr0080103	1	1	1	60	2L	10652593	10652611	TGACTAGTGAATCACCGGA		59	10652635	10652653	TGCTGCTGATATAGACTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6138	FBgn0032268	FBtr0080098	1	1	1	61	2L	10567849	10567868	TGGTATGGAACAACAAAGAG		57	10567889	10567910	CGCTATAAGTGTAGTTTCACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7384	FBgn0032262	FBtr0080135	2	1	1	62	2L	10509504	10509522	TGCATACTCCTAGTTTCGG		58	10509245	10509263	AATCGTGCTATTCTCCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	SamDC	FBgn0019932	FBtr0079994,FBtr0079995	3	2	2	76	2L	10340228	10340319	TTTGTGTTAAGTGAGAGCAG		58	10340358	10340376	AATGGAGTAGTCGTTCCAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CYLD	FBgn0032210	FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069	2	5	5	80	2L	10296849	10296945	TTCTAAAGCTAAGCTCGGG		59	10296787	10296808	CACTCGGTAATGTTAACTTCTC		58	NA	
Drosophila melanogaster	50	bsk	FBgn0000229	FBtr0080087	1	1	1	105	2L	10248598	10248616	AAATGGACTTGGATCACGA		58	10248448	10248530	GATGGCTTTAAGTCTCTGTG		58	NA	
Drosophila melanogaster	50	CG5708	FBgn0032196	FBtr0079956,FBtr0079955	2	2	2	81	2L	10225002	10225021	GCGTATTTCATCTAAGGTGC		59	10224875	10224964	GCTCCTAACATAGTATACCTATCAC		59	NA	
Drosophila melanogaster	50	CG13134	FBgn0032182	FBtr0079968	2	1	1	175	2L	10097806	10097825	GAATTTCCATCACTTCGACG		59	10096921	10096939	ATTTGCTGGCATTAACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5846	FBgn0032171	FBtr0079891	2	1	1	113	2L	9956413	9956431	AAGACCTGGATCTAAGTGC		58	9956318	9956336	TTATGGCCGTCATGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	und	FBgn0025117	FBtr0079866	3	1	1	150	2L	9764623	9764641	AAATGGACACTCCATCAGC		59	9764875	9764894	CATATCGTCATGGACCAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4389	FBgn0028479	FBtr0079859,FBtr0079857,FBtr0079858	1	3	3	81	2L	9575428	9575513	GGTAAACTTCGCGTAAATCG		59	9575366	9575384	TCTTCACAAAGTCGGTGTC		59	NA	
Drosophila melanogaster	50	tai	FBgn0041092	FBtr0079794	3	1	1	80	2L	9235196	9235214	ACAAGCGTGGAGATATGAC		59	9235257	9238970	AAATCTCACGATACGTTCGA		59	NA	
Drosophila melanogaster	50	CG17906	FBgn0032086	FBtr0079762	1	1	1	81	2L	8994955	8994973	GGATCTCACACTACACCAC		59	8995015	8995098	TCTGGCATGGTTAATGATAGAG		59	NA	
Drosophila melanogaster	50	CG31886	FBgn0032079	FBtr0113029,FBtr0079787	2	2	2	60	2L	8955036	8955054	CCAGGATGTGCTAATGGAG		59	8954994	8955015	TGGAATATCCTCAGTCAAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8451	FBgn0031998	FBtr0079637	1	1	1	82	2L	8202398	8202477	TCTGGATGAGATTCTGTTTCTG		59	8202279	8202297	CATGGAGATTAATGCCCGA		59	NA	
Drosophila melanogaster	50	Slob	FBgn0024290	FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518	1	4	4	80	2L	7649009	7649028	TTGAGGACTTAGTCCTTTGC		59	7648880	7648969	GCTTAATTGTACTGAAACAGGG		59	NA	
Drosophila melanogaster	50	CG5261	FBgn0031912	FBtr0079445,FBtr0079444	1	2	2	103	2L	7428203	7428285	TAAGCTCAACGAAGGTGAC		59	7428351	7428370	CCTGGATGAGAATCTTAGCC		59	NA	
Drosophila melanogaster	50	CG17376	FBgn0042189	FBtr0079380	1	1	2	93	2L	6800106	6800501	CCAACTTATCCATGTGGCT		59	6800031	6800049	TGTTACACAACATGGTCCA		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG31633	FBgn0051633	FBtr0079325	1	1	1	83	2L	6655003	6655077	ATGACTTGGTTTCGAAGCA		59	6654938	6654958	CAGGTAATTGTGAATAGCTGC		59	NA	
Drosophila melanogaster	50	Gal	FBgn0001089	FBtr0079230	1	1	1	82	2L	6004845	6005017	CAATGCACTAAGGACAATTCTG		59	6004784	6004803	CAGTGAACCCAAAGTTTGTG		59	NA	
Drosophila melanogaster	50	CG7236	FBgn0031730	FBtr0079133	2	1	1	92	2L	5712410	5712487	ATTAGGCTACTGAAGAACCTG		59	5712541	5712559	GAACTCGAAGACCAGATGG		59	NA	
Drosophila melanogaster	50	CG14013	FBgn0031720	FBtr0079121	2	1	1	60	2L	5553644	5553664	TACAATGACTACATCTCCTCG		58	5553604	5553623	TTTGATTGCCCAGATATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His3.3A	FBgn0014857	FBtr0079011	3	1	2	292	2L	5055489	5055507	GGACTTCAAGACCGATCTG		59	5055899	5055920	GATAGACCTAAGTACTAAGCGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG3244	FBgn0031629	FBtr0077417	2	1	1	155	2L	4799863	4801820	AAAGATGAAAGTCACCCTGG		59	4797620	4797638	TAGGAGAACTCCTTGGGAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15431	FBgn0031602	FBtr0077459	3	1	1	196	2L	4408317	4408335	ACGACTATTTCGTGGAGAC		59	4408064	4408082	GTAGGAGCTATCGGTACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Art2	FBgn0031592	FBtr0077476	2	1	1	60	2L	4278801	4278821	GATATTATAGTGTGCGACTGG		58	4278635	4278653	ACGACTCGAGCATATTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305	2	10	10	83	2L	3624270	3624291	CAGCTAATTTCCAATCTAGACG		58	3623866	3624229	GAATTCCTCGTTGATCTTTCTG		59	NA	
Drosophila melanogaster	50	CG33123	FBgn0053123	FBtr0077562	2	1	1	80	2L	3511135	3511153	ACTTTGGAGTTCGATGAGC		59	3511012	3511093	TTCCAAGACATCAAGATCCAG		59	NA	
Drosophila melanogaster	50	CG3238	FBgn0031540	FBtr0077569	1	1	1	60	2L	3468652	3468672	CCGGAGTTTGTAAAGATTCTG		58	3468612	3468630	TGGTTATGGAATCGTTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15408	FBgn0031523	FBtr0077587	2	1	1	165	2L	3333265	3333284	TAATTGCCATACCACATTCG		58	3333471	3333654	AAGGTTCCTCTGATGTTGG		59	NA	
Drosophila melanogaster	50	CG3488	FBgn0014906	FBtr0077576	1	1	1	128	2L	3167131	3167213	AACAGGAGGATGACATCAC		58	3167305	3167323	CAATGTGATTTAGCACCGC		59	NA	
Drosophila melanogaster	50	alpha4GT1	FBgn0031491	FBtr0077670	2	1	1	60	2L	3022432	3022450	TCAAAGATGGTCGTTTGTC		57	3022336	3022355	CGGAGAAAGTCTGATATGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)s5379	FBgn0010704	FBtr0100674,FBtr0077840,FBtr0100673	2	3	3	140	2L	2229568	2229648	TCTTAGTGGTGAAACCTGG		58	2229751	2229770	TGTGTCGTCATATCGAAGAG		59	NA	
Drosophila melanogaster	50	CG34172	FBgn0085201	FBtr0112363	2	1	1	121	2L	2192827	2192847	AGTTACATAAGAGACCTAGGC		58	2192664	2192682	AAATCTTATCCGCAGGTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG31935	FBgn0051935	FBtr0077916	1	1	1	112	2L	1595532	1595607	CAAACTAGCTGACATTCTAAGC		59	1595441	1595459	GAAGTTCATCCGAATGGGA		59	NA	
Drosophila melanogaster	50	GluRIIC	FBgn0046113	FBtr0078026,FBtr0078027	1	2	2	80	2L	917374	917471	CTTTGGAAGAAAGGCTCAC		58	917513	917533	GTTTCCTATTGTTCCATACGC		59	NA	
Drosophila melanogaster	50	dbe	FBgn0020305	FBtr0078030	2	1	1	66	2L	869441	869459	CAGAAGTGTTCCCTTCGAG		59	869393	869411	TTTGATGATGTCACACCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED15	FBgn0027592	FBtr0078062	3	1	1	83	2L	475105	475125	TGGAGACTCTACTTAAGTGTG		58	475169	475242	TTGAGGATTTACCAAACTGC		58	NA	
Drosophila melanogaster	50	Ent1	FBgn0031250	FBtr0078095,FBtr0078094	3	2	2	127	2L	356466	356485	CATGTCGAAGATCTATCTGC		57	356304	356377	AATAAACATCTGTCCACACG		58	NA	
Drosophila melanogaster	50	CG11617	FBgn0031232	FBtr0078146	3	1	1	62	2L	205204	205281	ATATGACCAGGCAGAAAGC		59	205160	205178	CATCTGTGGTAAAGATCGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	stnB	FBgn0016975	FBtr0111138,FBtr0111137	1	2	2	81	X	22386913	22387148	ACCATCAAATTTCAACCACC		58	22386851	22386869	GAAGTTCACGATTCTTGGG		58	NA	Nonspecific
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077207,FBtr0077204,FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077206,FBtr0077210	1	8	8	102	X	21253981	21254060	AACACGATTGTAAAGGCTG		58	21254126	21254144	TCATTTCCAGGGTGATACG		59	NA	
Drosophila melanogaster	50	CG15445	FBgn0031161	FBtr0077252,FBtr0077251,FBtr0077253,FBtr0077250	2	4	4	80	X	20989730	20989748	TACGAAAGGATCAATCGCA		59	20989789	20989900	CTGATCCTCCATCTCTATTAGG		58	NA	
Drosophila melanogaster	50	Mgstl	FBgn0025814	FBtr0077243	1	1	2	201	X	20914131	20914149	GTTGAATCCCAGACCAGAC		59	20914314	20914710	AGGTCTTCGTCTTGAAACG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11229	FBgn0031138	FBtr0077282	3	1	1	60	X	20782713	20782733	CTGGGAGACAATATACCTTGG		59	20782755	20782773	GTCTTTGTCGTCATCAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12701	FBgn0031071	FBtr0074808,FBtr0074807	1	2	2	60	X	19671582	19671601	CCACATGATAATCAAGAGCG		58	19671541	19671561	TATGCTCTTCTCGATCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14218	FBgn0031031	FBtr0074770	1	1	1	77	X	19474950	19475029	GATACCTTCTTTAGGTCGC		57	19474891	19474909	GGAGTCAACTAAGTCTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rictor	FBgn0031006	FBtr0074689	3	1	1	84	X	19148554	19148643	GTTTATAGACGCCTCTCCG		59	19148488	19148507	TCAAATCATTAGGAGGCAGG		59	NA	
Drosophila melanogaster	50	par-6	FBgn0026192	FBtr0074456,FBtr0074455	3	2	2	94	X	17598551	17598569	GTTGCCGATTAACAACGAC		59	17598624	17598712	CATTAAGATCATCCTTTCGCTG		59	NA	
Drosophila melanogaster	50	xmas-1	FBgn0016080	FBtr0074405	3	1	1	273	X	17047247	17047265	GAGATCGTCCAATCACCAG		59	17046813	17046831	CTTGGTGATCAGCCTATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9676	FBgn0030773	FBtr0074364	1	1	1	163	X	16593873	16593946	GTAGCTCCAGCTAATGAGC		59	16593728	16593746	TTGGAGTTAAAGGTCAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9981	FBgn0030746	FBtr0074304	2	1	1	80	X	16297173	16297191	CTCTAAAGGAGGGATTGGA		57	16297040	16297131	TCCTTATGACAGTTACTCTGG		58	NA	
Drosophila melanogaster	50	U2af50	FBgn0005411	FBtr0074234	3	1	1	86	X	16251575	16251593	TTATTTCGACAGTGGTTCC		57	16251441	16251525	GTTCCTTAACCTGATCGTC		57	NA	
Drosophila melanogaster	50	l(1)G0136	FBgn0026666	FBtr0074084	3	1	1	129	X	15629207	15629297	GACAAGTTGGATGAGGAGG		59	15629457	15629475	TGTTAAACACGAACTCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15747	FBgn0030474	FBtr0073766	3	1	1	62	X	13232590	13232608	AGCTGCTCCTCAATTTCAG		59	13232633	13232652	CGTTCCATTAGACTAGGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32643	FBgn0052643	FBtr0073716	1	1	1	81	X	12878837	12878855	AGCACATACGTTACTACGG		59	12878899	12878918	GTATTCTGTTGGTCAAGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tomosyn	FBgn0030412	FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678	1	4	4	80	X	12546142	12546277	ACTATCACGATGAAAGATGG		57	12546317	12546338	TAGACTAGGAAGACTATGTACC		57	NA	
Drosophila melanogaster	50	Cyp311a1	FBgn0030367	FBtr0073640,FBtr0073639	3	2	2	109	X	11924493	11924511	CAAATTCGAGGGTCAATCG		58	11924349	11924369	CATATAGCACAAACGACATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1756	FBgn0030303	FBtr0073502	1	1	1	91	X	11368366	11368384	ACAAAGACTTTCCAGAGCC		59	11368439	11368922	ATTGCCATAGCCTATGGTG		59	NA	
Drosophila melanogaster	50	CG15202	FBgn0030271	FBtr0073438	2	1	1	127	X	11037218	11037300	AAATTAGCTATTGCGGTCG		58	11037391	11037409	GATGTAGTTGCTCTCGGAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG9817	FBgn0030219	FBtr0071509	1	1	1	82	X	10499259	10499375	CATAATGCCACAGAACAGC		59	10499195	10499214	CGTACTTGGAGTACATCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32700	FBgn0052700	FBtr0071374,FBtr0071373	1	2	2	204	X	9401288	9404203	GTATCCTTCAGTGGCAGTC		59	9401102	9401120	CTTCAGCTGCTTATGTCTG		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG15326	FBgn0029965	FBtr0071149	2	1	1	259	X	7759225	7759243	CATCTTATAGCACCCTCGA		58	7758713	7758731	CAGAGTGGATGTGGTAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	inx7	FBgn0027106	FBtr0071035,FBtr0071034	2	2	2	92	X	6886132	6886221	TGTGCTTCTACAGAAATGTC		57	6886059	6886078	CAATTACCGCCAATAATTCG		57	NA	
Drosophila melanogaster	50	CG2709	FBgn0024977	FBtr0070486	2	1	1	98	X	2620747	2620765	AATCACAAGCAGGTCAGAC		59	2620826	2620845	AGAAGGTGTGCTTCTTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HLH3B	FBgn0011276	FBtr0070506	3	1	1	89	X	2575464	2575482	GTCCATATCCGATGGAGAC		59	2575393	2575411	ATGTAATCGCGAAGATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF2B-epsilon	FBgn0023512	FBtr0070350,FBtr0070351	1	2	2	72	X	1814897	1814916	ATCCAACTACATTAAGAGCG		57	1814783	1814862	ATTCTCCTCGTACACATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	A3-3	FBgn0028550	FBtr0070244	3	1	1	238	X	1146120	1154001	GCATTTATTGATTCGATGCC		57	1145901	1145921	GCTTATCACATGTCAAACTCG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177	3	4	5	149	X	938609	938687	CAATCTGGATAAGGCTCCT		58	938800	938818	CTATCTGGCATACCTGGTC		58	NA	
Drosophila melanogaster	50	CG14632	FBgn0029538	FBtr0070193	3	1	2	89	X	787264	787282	TCGTATACGCGATATGCTG		59	785609	785629	CTTAACGTCTCTTCTGATTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13359	FBgn0025616	FBtr0070145	3	1	1	60	X	697379	697398	AGCGGTTAATTCCCTATGTC		59	697338	697357	CACCACACTACCATATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40766	FBgn0085773	FBtr0114223	2	1	1	147	U	8596147	8596165	TTGATCACGAGTTAGTCGG		59	8596276	8596294	AGGTTACGAAAGTGGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40973	FBgn0085549	FBtr0113962	3	1	1	77	U	6667865	6667884	AGTTTATCGTTGTCATCACC		57	6667807	6667825	ATTCCGAAGTACCGTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40068	FBgn0058068	FBtr0113783	1	1	1	60	U	1206511	1206529	GGAGATTGCCAAGAAACTG		58	1206552	1206571	GTTTGTTTCTTCAGGTGTGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40096	FBgn0058096	FBtr0113791	2	1	1	144	U	181436	181454	AACTCGAGTCAAGTTCCAG		59	181624	181642	CAAACCTCGTGTAAGGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0100344,FBtr0100346,FBtr0100342,FBtr0089328,FBtr0100343,FBtr0089327,FBtr0100345	3	7	7	81	4	1127214	1128333	GAAGCACATGATGAGAACC		58	1128378	1128396	CACTGTACGTTGACATACG		58	NA	
Drosophila melanogaster	50	CG1732	FBgn0039915	FBtr0089972,FBtr0089971	3	2	2	88	4	653332	653964	TAATTCTGAGGTGTGGATCG		59	654015	654033	TGTAACTTCCTAACGCCAC		59	NA	
Drosophila melanogaster	50	Hcf	FBgn0039904	FBtr0089124,FBtr0089126,FBtr0089127,FBtr0089125	3	4	4	99	4	381551	381570	GCGATAAACATCAAAGAGCT		58	381630	382947	CGTACCACTGATTAGTAACAG		57	NA	
Drosophila melanogaster	50	Or85e	FBgn0026399	FBtr0081896	2	1	1	82	3R	4460875	4460893	ATTCGATGTGCTCTACTGC		59	4460656	4460830	AACTCAGGCCATTTACAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11318	FBgn0039818	FBtr0085739	2	1	1	85	3R	26933506	26933592	GGACTGAGAAGCAATTATCTC		58	26933441	26933459	CTAAAGGCCTTTGAATCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sima	FBgn0015542	FBtr0114597,FBtr0085565	2	2	2	88	3R	25893707	25893725	AACATTGAGATTCCGTTGG		58	25893777	25894044	TCATGCATCTTGTCATCCA		58	NA	
Drosophila melanogaster	50	Dup99B	FBgn0024381	FBtr0089608	1	1	1	60	3R	25541040	25541058	TATTTCTCCTCTTGGTCGT		57	25540998	25541016	TTTCGATCCTGGGATAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1420	FBgn0039626	FBtr0085418	1	1	1	94	3R	24863886	24863904	GGAACTTGGATCCCAACTC		59	24863754	24863828	AAACTCAGCTTCCTCTTCG		59	NA	
Drosophila melanogaster	50	Ssl2	FBgn0041780	FBtr0085343	3	1	1	90	3R	24857938	24857956	TTACACAGGAATTCACAGC		57	24857811	24857884	ATAATCACAAGGTTGCCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	woc	FBgn0010328	FBtr0112857,FBtr0085178	2	2	2	82	3R	23083857	23083875	GTACTACGAGCGGTTTACC		59	23083729	23083812	TGACAATGTATTGCGAATCG		59	NA	
Drosophila melanogaster	50	CG6074	FBgn0039486	FBtr0085133	2	1	1	155	3R	22929095	22929312	CTACACGTACAAGGGTTCC		59	22928958	22928976	GTCCTGAAATTGTCCACCA		59	NA	
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085146,FBtr0085143,FBtr0112834,FBtr0085139	2	4	12	112	3R	22892376	22892851	TCTTTAATAGGACGGACACG		59	22892129	22892147	GTCATTCCTCAAAGGACGA		59	NA	
Drosophila melanogaster	50	Tsp97E	FBgn0039465	FBtr0085082	2	1	2	104	3R	22788171	22788895	CTTCAGCTTCACTGAGGTC		59	22788085	22788104	AAATAATCGTGCGGAAAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Lgr3	FBgn0039354	FBtr0084899	2	1	1	92	3R	21501836	21501902	TATTACAAGGTTGTGCTGG		57	21501958	21501976	GATAAGCATCGAAACCTCC		57	NA	
Drosophila melanogaster	50	CG5071	FBgn0039347	FBtr0084884,FBtr0084885	3	2	2	61	3R	21445600	21445618	CAATTTACCAGCCAGATGC		59	21445643	21445661	TTGTTGACCAATTAGCTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11910	FBgn0039332	FBtr0084846	1	1	1	60	3R	21207416	21207434	TTGCGGTTGAATCTTTCTG		58	21207374	21207394	GTTTCTTGAACAATCCCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11913	FBgn0039331	FBtr0084833	1	1	1	72	3R	21184208	21184339	CATCAAACAAAGAAGGCCC		59	21184375	21184393	TTCATGAACTCGGGATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CHKov2	FBgn0039328	FBtr0084849	2	1	1	109	3R	21156227	21156245	AGCACCAGAAATTACTCGA		58	21156086	21156156	ATAGTCGCTTATGAGAACGAG		59	NA	
Drosophila melanogaster	50	CG18528	FBgn0039189	FBtr0084628	3	1	1	112	3R	20185023	20185041	GATTTGACAGAGGTGGAGG		59	20184873	20184891	CAGTTGTCGTAGAGTCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	crb	FBgn0086905	FBtr0111008,FBtr0084603	3	2	2	80	3R	20134439	20134754	TGCCACAACAAGATAAATGC		59	20134795	20134815	CTCATCGATATCTACTTCGCA		59	NA	
Drosophila melanogaster	50	Lsd-1	FBgn0039114	FBtr0084456,FBtr0084455	2	2	3	89	3R	19590398	19590480	CCCGAAATGATGTACTGGA		59	19590532	19590551	GATTTGCTTGACAGAATCGG		59	NA	
Drosophila melanogaster	50	CG31457	FBgn0051457	FBtr0084405	2	1	1	79	3R	18952757	18952834	GTTACTGGACGATGAACCA		59	18952696	18952714	TGTTGATCTCAACCATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6455	FBgn0019960	FBtr0084188	2	1	2	140	3R	17847984	17848135	ATCACCTACGCCAAATACG		59	17847862	17847880	ATCGATCTGATCGTTGACG		59	NA	
Drosophila melanogaster	50	CG31176	FBgn0051176	FBtr0084114	2	1	1	108	3R	17499107	17499125	AGAAGGTCACCTTTAGTGC		59	17498768	17499036	GCAAGATGATACTTGCTCTG		58	NA	InUTR
Drosophila melanogaster	50	CG16727	FBgn0038719	FBtr0083780	3	1	1	80	3R	15440007	15440083	TGTACATCTTGGTCTTCGA		57	15440127	15440145	AGCAGTAGAATACAGCCAG		58	NA	
Drosophila melanogaster	50	CG7685	FBgn0038619	FBtr0083630	2	1	1	128	3R	14231129	14231211	ATCCCATCAAGATTGTCAGG		59	14231302	14231320	AGTAGTTGTCGTTCAGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31360	FBgn0051360	FBtr0083480	3	1	1	65	3R	13510991	13511009	ATTGGTGCCTTCCTATTGG		59	13511035	13511056	CATAGTGAAATTCTCCAGAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7587	FBgn0038523	FBtr0083460	3	1	1	240	3R	13420311	13420329	GTCTTCTGAACGAGGAGAG		59	13420598	13420673	TAGGGTTTGTTGCATTCAG		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG3678	FBgn0038461	FBtr0083376	3	1	1	80	3R	12816556	12816636	TACGATACACAATGGGTGG		59	12816494	12816513	TATGCGGATTAAGCTTCAGG		59	NA	Nonspecific
Drosophila melanogaster	50	Glut3	FBgn0015230	FBtr0083340	1	1	1	60	3R	12614802	12614820	TCTCTGAGATTTCTGCGTG		59	12614843	12614862	GTGTTAGAAAGTCGATCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14903	FBgn0038446	FBtr0083303	2	1	1	60	3R	12399042	12399060	CAAGTTGTGGATCGAACAG		58	12399000	12399019	AACATAAGGTTTCAAGGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14894	FBgn0038428	FBtr0083314	2	1	1	60	3R	12268268	12268286	AGAAGCCTTAGACATTTGC		57	12268226	12268244	GTTTCCGTAGAGAACTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33331	FBgn0067628	FBtr0082998	2	1	1	62	3R	10712692	10712711	ATCTTTACTTGGCAGGAAGG		59	10712733	10712754	GATTATCAGAAGGATTGACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9288	FBgn0038182	FBtr0082829	3	1	1	60	3R	9605777	9605795	CATTCTACTTCGAGCACGA		59	9605819	9605837	TCTGTAATGGGAGCTACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9796	FBgn0038149	FBtr0082760	3	1	1	132	3R	9224682	9224805	TGTTCAATGAGCAATTCGAC		59	9224569	9224587	AAAGATGGAGTCGATGCTC		59	NA	
Drosophila melanogaster	50	GstD2	FBgn0010038	FBtr0082569	2	1	1	60	3R	8197799	8197818	ACAAGAAGCTACTGAACACC		59	8197841	8197859	TTGAGCTTAACAAACTCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14731	FBgn0037964	FBtr0082478	3	1	1	60	3R	7757627	7757648	ATAGACTCTATTTCCCACATGC		59	7757667	7758004	CTATCAAGTCCCTTACTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	glo	FBgn0037954	FBtr0089918,FBtr0089917,FBtr0089919	1	3	3	193	3R	7644467	7644485	AACGCACAAGGAGATACTC		59	7643857	7644310	AAACTTCAATGTAGCGGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14722	FBgn0037943	FBtr0082431	2	1	1	60	3R	7568077	7568095	AACGACGAATATGACCTGG		59	7568118	7568137	TAATGTCGCCATCGTTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14713	FBgn0037928	FBtr0110809	3	1	1	60	3R	7494633	7494653	GTGATATTACAGTGGGATTGG		58	7494675	7494693	GTTGAAGGCATTGTTCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sle	FBgn0037810	FBtr0082231,FBtr0082232	1	2	2	155	3R	6162872	6162952	AAAGAAAGAGCATCTTGCC		58	6163071	6163089	TTTACATCCTTCTTCAGCG		57	NA	
Drosophila melanogaster	50	CG6293	FBgn0037807	FBtr0082240	1	1	1	68	3R	6134931	6134950	GAACCAATACCTTTGGAGAG		57	6134818	6134836	GTATTACACGTCGGGATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mtTFB2	FBgn0037778	FBtr0082173	3	1	1	143	3R	5872049	5872131	CATATACATACATCTCACCTGC		58	5872235	5872253	CTATAGGCCATCTGCTGAG		58	NA	
Drosophila melanogaster	50	CG11775	FBgn0037630	FBtr0081917	3	1	1	60	3R	4621856	4621876	CAGATGTACGAAATGATGAGG		58	4621948	4621969	TGTGATACTTCTCCAAATAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8202	FBgn0037622	FBtr0081914	3	1	1	89	3R	4559640	4559661	CAAGTTGACTGATCCAAATGAG		59	4559710	4559786	CTGTTTACCTCGTGTATCGT		59	NA	
Drosophila melanogaster	50	CG11671	FBgn0037562	FBtr0081829	2	1	1	188	3R	4113781	4113799	GATAATCAATGCCCTGGCT		59	4113950	4114026	AAATTTCCCTCCGTAAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2641	FBgn0037518	FBtr0081745	2	1	1	177	3R	3621856	3621973	GTTATGACAAGTGCAAGCC		59	3622114	3622132	TTGGTAGCGAACTCTTCAG		59	NA	
Drosophila melanogaster	50	sas	FBgn0002306	FBtr0081571,FBtr0081570	2	2	2	156	3R	3001105	3003936	ACAAGAGCTATAAGCACGG		59	3004056	3004074	ATCTTCTCCAGACAGTTGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31554	FBgn0051554	FBtr0078637	3	1	1	151	3R	1642729	1642747	CTTAATGACTCCACTCGGG		59	1642862	1642880	GATTCGAAGTCGTACTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpII18	FBgn0003275	FBtr0078787	2	1	1	72	3R	1197774	1197792	ACATCGAGATCATAGCTCC		58	1197828	1197846	TACTTTGTGGTAATGCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32461	FBgn0052461	FBtr0078567	1	1	1	60	3L	22947881	22947900	AGGTGCTTCCAATAAGACTC		59	22947840	22947858	TCGGCTTATACCACAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11241	FBgn0037186	FBtr0078536,FBtr0113188	1	2	2	93	3L	22729073	22729549	TGTCACCCAAAGGTTAACC		59	22728998	22729016	CATACTCGTGGATCTTGGG		59	NA	
Drosophila melanogaster	50	CG32450	FBgn0052450	FBtr0078501	3	1	1	72	3L	22323241	22323318	AATATGTGCGGAGTATGCA		59	22323354	22323372	TTCATACGCTGTTCAAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12972	FBgn0037076	FBtr0078403	1	1	1	74	3L	21339163	21339794	AAAGGGATCAAATCCCGTC		59	21339107	21339125	ATAGTAACGGATTACGGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6289	FBgn0036970	FBtr0078172	1	1	1	95	3L	20336866	20336884	GCCTCCAAGAATGAATCTG		58	20336943	20337018	TAGTCCAGCCTCATATACG		57	NA	
Drosophila melanogaster	50	CG6951	FBgn0036959	FBtr0074828,FBtr0074829	3	2	2	80	3L	20237666	20238044	CTCATTATACAGGTGGGCA		58	20238088	20238106	CTTGGATGCACGATATGTG		58	NA	
Drosophila melanogaster	50	CG14187	FBgn0036938	FBtr0074868	2	1	1	114	3L	20105762	20105871	TTCTTGTTGGTTTCACAGC		58	20105666	20105684	GATAATCCACAGGTCGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7385	FBgn0036937	FBtr0074869	3	1	1	147	3L	20102493	20102564	ATTATTTGACCCGGAGCTG		59	20102364	20102383	GTAGGTCATCATTAGGTCGC		59	NA	
Drosophila melanogaster	50	CG7433	FBgn0036927	FBtr0074908,FBtr0074909	3	2	2	98	3L	19992459	19992477	GAACATAGCTCCGAAAGGA		59	19992275	19992400	TTCTGGTACCATATGAAGATGC		59	NA	
Drosophila melanogaster	50	Cpr76Bd	FBgn0036881	FBtr0113181	3	1	1	115	3L	19530132	19530150	CCTACTTGAAGTCAGCACC		59	19530291	19530309	ATCATTCACGGCATACTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	fz2	FBgn0016797	FBtr0075028	2	1	3	143	3L	19153782	19163567	CAGTGACAATCAATCCTGG		58	19139512	19139530	TGTTTCCTTCCAGACACAG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	not	FBgn0013717	FBtr0075109	1	1	1	99	3L	18613427	18613448	CTCAGCGATTACTTTATGTCAG		58	18613282	18613369	AATAGAACTCCTGGAAGAGAC		58	NA	
Drosophila melanogaster	50	rpr	FBgn0011706	FBtr0075120	2	1	1	63	3L	18391232	18391250	AGTCACAGTGGAGATTCCT		59	18391187	18391205	TGACATGAAGTGTACTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32189	FBgn0052189	FBtr0075163	1	1	1	69	3L	17828096	17828114	CAACAACTGATTCGTCCAC		59	17828045	17828063	TTCTTCTTTGTGGAGGCAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pep	FBgn0004401	FBtr0075198	3	1	3	185	3L	17636609	17636627	TTTGGTAACAACATGCGAC		58	17633133	17633152	TATGGAGACTCCTTGGTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Exn	FBgn0027593	FBtr0075271,FBtr0075273,FBtr0075272	2	3	3	190	3L	16983972	16984125	ATTCGTAGATGACTCAGACC		58	16984278	16984296	AATCATCCGAAATGACCAC		57	NA	
Drosophila melanogaster	50	CG4729	FBgn0036623	FBtr0075417,FBtr0075419,FBtr0075418	1	3	4	81	3L	16377075	16377093	ATCAAGCCCATAGACAAGC		59	16376952	16377031	ACACGAAGATAAGTTGGGAG		59	NA	
Drosophila melanogaster	50	comm3	FBgn0053209	FBtr0075589	3	1	1	96	3L	15625073	15625092	GATTGGAGTCATCCTTACAC		57	15607121	15625014	GTATGAGTTCTTCCACTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16959	FBgn0036481	FBtr0075655,FBtr0075656	1	2	2	237	3L	15114503	15115737	GATCAGGTCAAGAGAACCG		59	15114284	15114302	CATAGCAAGACTCCTCTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10725	FBgn0036362	FBtr0089323	2	1	1	104	3L	13431284	13431361	GTGCATGAATGAGATAGCTG		58	13431428	13431446	GATCCAATACACTCGACCT		58	NA	
Drosophila melanogaster	50	CG14111	FBgn0036350	FBtr0075841	1	1	1	60	3L	13373296	13373314	CTACCAAATCACCGAACTC		57	13373337	13373356	CTCTTGGGAGACTCAATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ptp69D	FBgn0014007	FBtr0075913,FBtr0075914	1	2	2	80	3L	12733375	12733459	TCATGATATCCGAAATCGGAG		59	12733498	12733519	GTATGTGATCGTATTGAACCTC		58	NA	
Drosophila melanogaster	50	CG6910	FBgn0036262	FBtr0076002	3	1	1	154	3L	12180066	12180084	CTGAAGCATAACAAGACCA		57	12180201	12180281	TCATAGCGATTGAAGATCAG		57	NA	Nonspecific
Drosophila melanogaster	50	CG11560	FBgn0036249	FBtr0075993	3	1	1	99	3L	12113597	12113615	GTGAGCAGTTCTATGAGGT		58	12113677	12113762	GATTTCAGAGTCTGCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5964	FBgn0036206	FBtr0076085	2	1	1	60	3L	11784574	11784595	CAGGATCATGGAAATTATCTGG		58	11784535	11784555	GAAGTTCTTGAAGATTGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18331	FBgn0036181	FBtr0076140	3	1	1	60	3L	11605043	11605062	ACTTGAGTCTGCCTAAACTG		59	11605002	11605020	TTTGAGCTTGACTTTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7573	FBgn0036153	FBtr0076170	3	1	2	263	3L	11301765	11304930	ATCAGGTTTGATCCTTTGC		57	11305229	11305248	AAGCTGTTTATCCTTGGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32048	FBgn0052048	FBtr0076376	2	1	2	159	3L	9568818	9574505	TAAGGTACGAGTGCAAAGTG		59	9574683	9574704	CTATAGATGGGATGATTGAGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	path	FBgn0036007	FBtr0076428,FBtr0076427	1	2	2	107	3L	9490135	9490223	CCAACAACCGATAATGAAACTC		59	9490049	9490067	GATTCCCATGATGAGACCG		59	NA	
Drosophila melanogaster	50	Use1	FBgn0035965	FBtr0076537	3	1	1	137	3L	9129412	9129430	TGATTGCCTTCGTAATTGC		58	9128894	9128912	CTTAACGAGCGTTTAAAGC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Arp66B	FBgn0011744	FBtr0076737	1	1	1	83	3L	8108436	8108517	CTCCATCAAGTATCCGGTG		59	8108371	8108389	TACTTAAAGACGCACTGCT		58	NA	
Drosophila melanogaster	50	Prat2	FBgn0041194	FBtr0076945	3	1	2	147	3L	6906617	6907521	CAACACAACTGGACATAGC		58	6906488	6906506	AGATTGTTGATCATGCCCA		59	NA	
Drosophila melanogaster	50	Bre1	FBgn0086694	FBtr0077116	3	1	1	207	3L	5785974	5785993	CTAATAGTGCCAAGACACCA		59	5785672	5785804	GGCAACTGTCGTATATCCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112712,FBtr0112708,FBtr0114646	3	3	8	117	3L	5661233	5661801	TCTATTGAGTTCGTTCAGGT		58	5661880	5661899	AATGCAGGTGATGTTAACAG		58	NA	
Drosophila melanogaster	50	ago	FBgn0041171	FBtr0073246,FBtr0073247,FBtr0073245	2	3	3	100	3L	4247723	4247742	AAATTGTGGGACGTTAAGAC		58	4247576	4247660	GTGTCGTTTGCTCTAATCC		58	NA	
Drosophila melanogaster	50	CG11505	FBgn0035424	FBtr0073046,FBtr0073047,FBtr0073045	2	3	3	95	3L	3231785	3231918	CCAAAGAGAAAGATAATCGTCC		58	3231974	3231992	TAGTGTTGTGCTCTGTAGC		59	NA	
Drosophila melanogaster	50	BtbVII	FBgn0012049	FBtr0073025,FBtr0073024	1	2	2	80	3L	3150144	3150225	GTACTTTCAGGCTTTGTTCAC		59	3150266	3150285	TTTAGGTCATCGTACTGCAC		59	NA	
Drosophila melanogaster	50	mRpS35	FBgn0035374	FBtr0072971	2	1	1	245	3L	2781128	2781209	AAGAATTCCGAGTGCTCAG		59	2781417	2781436	GTATCTTCATCAGCTCTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1317	FBgn0035333	FBtr0072901	3	1	1	298	3L	2370382	2370403	GGTATACGTTTACTACTTCGCT		59	2370048	2370124	TTTGTAAGAGCAGCAATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13919	FBgn0035248	FBtr0072759	1	1	1	60	3L	1645792	1645810	CCTCCCAAGTGATGATCTG		59	1645833	1645852	GTCACGTATATGGGAATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL17	FBgn0035122	FBtr0072503	1	1	1	60	3L	265001	265019	TGAACTGTTCTACAACCGT		58	265043	265123	ATTGGAAATGAGCAGTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13879	FBgn0035120	FBtr0072502	2	1	1	60	3L	258926	258944	ACCCTTAAGATCCCAAAGG		58	258968	258986	CCAGCGAATCTACCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33388	FBgn0053388	FBtr0086380	1	1	1	62	2R	15640789	15640807	AATACATCGGTTCTCGTCC		59	15640745	15640763	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33445	FBgn0053445	FBtr0086437	1	1	1	62	2R	15619770	15619788	AATACATCGGTTCTCGTCC		59	15619726	15619744	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12848	FBgn0040666	FBtr0072437	1	1	1	74	2R	20650292	20650310	ATTCGTGGAGAAGTACTGC		59	20650236	20650254	AACTTACGGTCCATGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	IFa	FBgn0053527	FBtr0091490	1	1	1	121	2R	20465423	20465441	GTATCCCGTTAAAGCCTCC		59	20465320	20465338	TATTTGCTGTCGTTCTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3492	FBgn0035007	FBtr0072294	1	1	1	64	2R	20361101	20361119	GATCTACCTGGACATCGAG		58	20361147	20361165	TGAAGAGCTGGATGATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mov34	FBgn0002787	FBtr0072290	2	1	1	60	2R	20291457	20291475	CCACCAGATTGTCTACCAG		59	20291499	20291517	GTCATTGGTTATATCGGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30179	FBgn0050179	FBtr0072182	1	1	1	62	2R	19965169	19965187	AAGTTCTATGGGCCAAAGG		59	19965213	19965231	TTAAGCCATTGTCAGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13545	FBgn0034828	FBtr0071972	1	1	1	255	2R	19045543	19045617	GCTTTGGCCCTATTAATCC		58	19045306	19045324	TAGGATGAGGAGTAGACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30190	FBgn0050190	FBtr0113362,FBtr0113363,FBtr0071950	1	3	3	120	2R	18817485	18817503	TGAGGCCAAGAAATCAGAC		59	18817586	18817724	ATGTTGTAGTTGAAATCGCC		58	NA	Nonspecific
Drosophila melanogaster	50	T3dh	FBgn0017482	FBtr0071848	1	1	1	86	2R	18218505	18218580	CAAACCTACTTTGGCTGTG		58	18218437	18218455	CAGAACACATCAAAGCCAG		59	NA	
Drosophila melanogaster	50	Oatp58Dc	FBgn0034716	FBtr0113105,FBtr0071777	1	2	2	80	2R	18113468	18113488	CTATACTACACGTTGGGAGTG		59	18112902	18113429	GTATGAAAGACTCAACAAAGCC		59	NA	
Drosophila melanogaster	50	CG9865	FBgn0034649	FBtr0071680,FBtr0071681	1	2	2	60	2R	17556398	17556417	ATCTACTAATATCCGCCCTG		58	17556357	17556375	CTGTCGTGTAATTGTCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11136	FBgn0034540	FBtr0086233	2	1	1	92	2R	16547206	16547290	ATAGATAACTCACCGATCCA		57	16547345	16547363	TATTTCCAGGGAGGAACTG		58	NA	
Drosophila melanogaster	50	CG16739	FBgn0034505	FBtr0086286	2	1	1	175	2R	16229782	16229802	GCTTAAGGATCTGTACTTCAC		58	16229939	16230019	CCACTTTGACAATTCGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ena	FBgn0000578	FBtr0086583,FBtr0086584,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582	3	6	6	94	2R	15048398	15048489	AAAGAATAAGGTCACCACCTC		59	15048545	15048563	TAGAGCTTCGTCCTATGGT		59	NA	
Drosophila melanogaster	50	unc-104	FBgn0034155	FBtr0113088,FBtr0113087,FBtr0087079,FBtr0113089	2	4	4	80	2R	12650303	12650322	CCATGATATGCAAGGATCTG		58	12650186	12650261	TATAGGAAACCTCAACCGAG		58	NA	
Drosophila melanogaster	50	CG6262	FBgn0034121	FBtr0087151,FBtr0087152,FBtr0087153	1	3	5	60	2R	12249831	12249849	GATCCAGATTGTCCATGTG		57	12249872	12249891	CTTGAACGACAATTAGTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cato	FBgn0024249	FBtr0087183	1	1	1	75	2R	12165673	12165691	AACTAGGACCCATCATGGA		59	12165616	12165634	CCTGTGAAGCTGTTACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12964	FBgn0034022	FBtr0087358	2	1	1	62	2R	11376845	11377060	GTGCAGTTGCTCAATATCC		58	11376801	11376822	CCAAATACTGAGGATATTGAGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG8179	FBgn0034020	FBtr0087325	3	1	1	211	2R	11354265	11354358	AGATTGTCATACAGACCGG		58	11354533	11354551	TCTAATCCTACGCTTGGTC		58	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG30475	FBgn0050475	FBtr0087427	3	1	1	298	2R	10839406	10839425	TACCATCATAGTCACCACAG		58	10838913	10839145	GAAACAGCCATAACTGTCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Ercc1	FBgn0028434	FBtr0087448	3	1	1	65	2R	10741044	10741120	CTAATCCACACCAGAAGCT		58	10741149	10741167	CAGCATCAGTCTTGTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6347	FBgn0033874	FBtr0087637	3	1	1	178	2R	9725552	9726011	AGAGATATACGAATGGCCA		57	9726153	9726171	GAATAGATGTCCTTCGAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG30056	FBgn0050056	FBtr0087823	2	1	1	107	2R	8449866	8449884	ACGAGATCCTGATTAACCA		57	8449955	8449973	GATCGGAGATGGACATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr49Ac	FBgn0033725	FBtr0087917,FBtr0087916	1	2	2	88	2R	8276584	8276771	GATCACTCTTACCTGACTGAG		59	8276821	8276839	TAGAATCCCTTGGCATGTG		59	NA	
Drosophila melanogaster	50	CG13204	FBgn0033627	FBtr0088129,FBtr0088128	3	2	2	204	2R	7256173	7256192	ATTTCCTAAAGCCCTTCCAG		59	7256417	7256435	TAGGTATTAACCGTGTGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	epsilonTry	FBgn0010425	FBtr0088160	3	1	1	77	2R	7233445	7233464	GTATCGTCGGTGGTTATGAG		59	7233387	7233405	AGAAGTGTGATCCATAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alphaTry	FBgn0003863	FBtr0088161	2	1	1	78	2R	7232251	7232269	CTAACACCATGGTCAACGA		59	7232191	7232211	CTAATAGCCTTGATGCTTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or47b	FBgn0026385	FBtr0088166	3	1	1	84	2R	7207473	7207621	TTATACTCAGTCAGTGGAGG		57	7207408	7207426	TATATCCCTCTGGATGCCT		58	NA	
Drosophila melanogaster	50	BBS4	FBgn0033578	FBtr0088202	2	1	1	92	2R	7023913	7024338	CCGAACACTATACATAATGGG		57	7024392	7024410	TAAATCTCGTGGTCCTGTC		58	NA	
Drosophila melanogaster	50	Pfk	FBgn0003071	FBtr0088420	3	1	3	167	2R	5997998	5998017	GTGTTTAAGAACCATGCAGG		59	5999073	6000132	ATGAAGTAGACCTTGCAGC		59	NA	
Drosophila melanogaster	50	CG1407	FBgn0033474	FBtr0088436,FBtr0088435	3	2	2	100	2R	5919791	5919809	CATGCTTCTGTTCTACCAC		58	5919621	5919728	GTATCCTCCATTGATCTGGT		58	NA	
Drosophila melanogaster	50	Mef2	FBgn0011656	FBtr0088444,FBtr0088443,FBtr0088447,FBtr0088445,FBtr0088446	3	5	6	90	2R	5806136	5806226	ATATGCAGATCAACGACAGAG		59	5806066	5806084	AAAGGAATAGCTCGTGAGG		59	NA	
Drosophila melanogaster	50	CG1690	FBgn0033442	FBtr0088496	1	1	1	72	2R	5645394	5645412	TATTTGTACGCTCCAACGA		59	5645340	5645358	TTGATCACCAAGCTTTGAC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	rad201	FBgn0003194	FBtr0088619	1	1	1	67	2R	5054460	5054478	AATTTCAACAGGCGTAAGC		59	5054411	5054429	GACTTCATAACCCGTTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8690	FBgn0033297	FBtr0088752	1	1	1	124	2R	4360989	4361010	CACACTTGAAGATATACAAGGC		59	4361095	4361173	TTTGGTCAGAGATCGTTGG		59	NA	
Drosophila melanogaster	50	CG30375	FBgn0050375	FBtr0088799	2	1	1	101	2R	4153885	4153903	AAATGACATAGCCTTGCTC		57	4153745	4153820	TAGTTGAAGCTGTTCTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12159	FBgn0033232	FBtr0088889	1	1	2	146	2R	3803014	3803411	TTATAGGCTCCGACTTTCC		58	3802674	3802904	TAAACCTGAACCAACTCGA		58	NA	
Drosophila melanogaster	50	CG12822	FBgn0033229	FBtr0088842,FBtr0088841	3	2	2	158	2R	3719998	3720016	GACATTGAGACGATAACCC		57	3720138	3720215	ATAATTGCTCTGACCTTGG		57	NA	Nonspecific
Drosophila melanogaster	50	CG30492	FBgn0050492	FBtr0088917,FBtr0088913,FBtr0113382,FBtr0088916,FBtr0088914,FBtr0088915	3	6	6	95	2R	3526397	3527215	CGGTGCTAAATAAGATTGTGG		59	3527271	3527290	TGAAATTCTCGTCAATGTGG		58	NA	
Drosophila melanogaster	50	Corin	FBgn0033192	FBtr0088909,FBtr0088908	1	2	2	80	2R	3446452	3446472	ACAGATTCCCTACAACTACAC		59	3446514	3446589	GAATCCAAGTCCGTTTGAG		58	NA	
Drosophila melanogaster	50	CG1598	FBgn0033191	FBtr0088955	2	1	1	92	2R	3426864	3426883	ATCCGTGCTAATCATATCCA		58	3426707	3426809	AAGCCATTTACCTTTGTCG		58	NA	
Drosophila melanogaster	50	CG30438	FBgn0050438	FBtr0086068,FBtr0086067,FBtr0086069,FBtr0086070	2	4	4	83	2R	1436271	1436341	GAAATATGACATGGTGGCA		57	1436388	1436406	TCAGTGCTAAGATCAGGAC		58	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-640b	FBgn0083025	FBtr0113543	3	1	1	108	2L	20419014	20419033	ATGTTGAAGATGATGTGGCT		59	20419104	20419122	AGTTGGCAACCATCTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9318	FBgn0032880	FBtr0081393	2	1	1	63	2L	20731804	20731825	GCTGAAATGGAAGAGTAATGTC		59	20731708	20731780	CAATGAGAAGACCACACCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13077	FBgn0032810	FBtr0081257	3	1	1	290	2L	19566372	19566391	TATTTCCTATCTCACGCTGC		59	19566995	19567013	AGAATGCACAGTACGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31800	FBgn0051800	FBtr0081179	2	1	1	153	2L	19033923	19033999	TATCACCGGAAGAATGGAG		58	19033788	19033806	CCATCTAGTGCCTTTAGCA		59	NA	
Drosophila melanogaster	50	hk	FBgn0001202	FBtr0081180	2	1	1	75	2L	19031684	19031702	AATGAACGCATTCTTTCCC		58	19031563	19031645	GTTTACCAAACTCGCTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nak	FBgn0015772	FBtr0081189,FBtr0081187	3	2	3	122	2L	18965177	18965270	GATGAATGCGAGATTGCAC		59	18965073	18965094	TTAAGATCCCGATGGATAATCG		59	NA	
Drosophila melanogaster	50	bsf	FBgn0032679	FBtr0081087	2	1	1	107	2L	18452097	18452115	AGATTTCCGAACTTCTGGG		59	18451952	18452026	GCTCGAGTTCATTGATGGA		59	NA	
Drosophila melanogaster	50	Fas3	FBgn0000636	FBtr0081052	3	1	4	88	2L	18384849	18384867	TACTGATTGTGTTTGCACG		58	18387311	18392257	GTTGTTTGTCTTGGTTTCGT		59	NA	Nonspecific
Drosophila melanogaster	50	CG31746	FBgn0051746	FBtr0081060	3	1	1	88	2L	18193058	18200634	ATATCAGCACAGTTCTGGG		59	18192988	18193007	ATTACATCGATCTGCTCCAG		59	NA	
Drosophila melanogaster	50	CG31741	FBgn0051741	FBtr0081032	1	1	1	84	2L	18085926	18086008	AACTATTGAAGCTTGCCCT		59	18086056	18086074	ACGACTATTGACATTCCCA		58	NA	
Drosophila melanogaster	50	CG31804	FBgn0051804	FBtr0080967	2	1	1	60	2L	17364007	17364028	ATTACTGGATATCCTTGAAGGG		59	17364048	17364067	AGAATCCAACGAACATTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4278	FBgn0014092	FBtr0080834	1	1	1	60	2L	16327366	16327386	GCTCATAATCAGCTATCATCC		58	16327408	16327426	ATGTGACTGCGTAATCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31826	FBgn0051826	FBtr0080762	2	1	1	249	2L	15772679	15772697	TACTTTAGTCAGTGAGCGT		57	15772389	15772466	TTAGGTCCTCGCATTTCTC		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG15293	FBgn0028526	FBtr0080603	2	1	1	198	2L	14109137	14109209	CTTCTGAAGCTGAAGGGAG		59	14108957	14108975	TGAAATCCGGACCTAACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5446	FBgn0032429	FBtr0080388	2	1	1	60	2L	12427508	12427526	GAACTACTCCCTGAACAGC		59	12427385	12427484	TACGTATATGGTCAGCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6712	FBgn0032408	FBtr0080364	3	1	1	65	2L	12095332	12095350	CCTGAAACTACGTTCCCTG		59	12095285	12095304	ATTATCCAGGCATAGTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	prd	FBgn0003145	FBtr0080299,FBtr0080298	2	2	2	60	2L	12084916	12084934	CTGCGTATCGAAGATCCTG		59	12084874	12084893	AATTACGCCTGGTCTAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kek2	FBgn0015400	FBtr0080252	2	1	1	60	2L	11622177	11622195	AAACGTTTCAGGACTACAG		57	11622219	11622237	TCCCTGATAGGATTTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12299	FBgn0032295	FBtr0080113	3	1	1	104	2L	10739983	10740004	TAGACTCTGACATGTACTACGA		59	10740069	10740087	CATCGGTGTAAACCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Apf	FBgn0051713	FBtr0079895	1	1	1	61	2L	9938492	9938510	GTACGACGAGAAGGATCTG		59	9938449	9938467	GCACCTGATAATTCAGGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pelo	FBgn0011207	FBtr0079847	3	1	1	81	2L	9706675	9706693	ATCTGGTCGAATCCATTCG		59	9706738	9708154	TGAGCAAGTTGTTCTCCTG		59	NA	
Drosophila melanogaster	50	alien	FBgn0013746	FBtr0079781,FBtr0079780	3	2	2	117	2L	8995734	8995811	CTAGATGACACAATCAAGGGA		59	8995637	8995655	ATTGGATTTGGTTGGACCA		59	NA	
Drosophila melanogaster	50	CG9510	FBgn0032076	FBtr0100480,FBtr0100481	2	2	2	64	2L	8940290	8940308	AAGCAGGAATCAATGGAGG		59	8940187	8940262	AGATAGTAGGCCCAGTCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG34398	FBgn0085427	FBtr0112648,FBtr0112649	2	2	2	86	2L	8927410	8927428	CATAGATAGTGCCGACGTC		59	8927478	8927561	CTGGTGATTCCACTATCCC		59	NA	
Drosophila melanogaster	50	Snx6	FBgn0032005	FBtr0079631	3	1	1	112	2L	8219987	8220058	ATGCTGGCTACATTATTCC		57	8219893	8219911	TTTGAACTCCTCTTTGGTC		57	NA	
Drosophila melanogaster	50	CG14534	FBgn0031957	FBtr0079563	3	1	1	192	2L	7860586	7860685	GTGTTAGTGGTCCTCATGG		59	7860412	7860430	GTACATGGACGTAGACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k09022	FBgn0086451	FBtr0079343	2	1	1	88	2L	6859532	6859550	AGATTACGTCTGTTCCACC		58	6859666	6859684	TAATGTCCACCAAGTAGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13981	FBgn0031807	FBtr0079279	2	1	1	168	2L	6379272	6379290	CTACGTGTAGTGTCGAGTC		59	6379122	6379140	CAATCACCGAATTTGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gef26	FBgn0021873	FBtr0079249	3	1	1	87	2L	6325595	6325723	GCATGGATAGTCTTACCGT		58	6325773	6325792	AGTACTTCCACATCTTCCTC		58	NA	
Drosophila melanogaster	50	stai	FBgn0051641	FBtr0079198,FBtr0079196,FBtr0079197	1	3	3	96	2L	6121936	6122015	GTCGCATTTCTCTAGAAGC		58	6122075	6122093	TCATTGGTGATCTCATCCT		57	NA	
Drosophila melanogaster	50	obst-E	FBgn0031737	FBtr0079163	2	1	2	126	2L	5765983	5766001	AATCAGTGCTCTATTGTGC		57	5764186	5764205	GTTCTTGCACTCAATGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3652	FBgn0031600	FBtr0077460	2	1	1	137	2L	4393371	4393389	ATACTACAAGGCTCCTCCA		59	4393190	4393271	GAAGAATGAGATATTGCCGC		59	NA	
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305	3	10	10	112	2L	3623190	3623275	CGAGTTACTTACTGGTACCC		59	3623097	3623115	CATTGCGGGTGATATTCCT		59	NA	
Drosophila melanogaster	50	CG12795	FBgn0031535	FBtr0113019	3	1	1	63	2L	3453264	3453432	ATACAGGGCAATATGAGCG		59	3453459	3453477	GCTCCATAATGGATAAGGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG3347	FBgn0031513	FBtr0077579	1	1	1	60	2L	3270777	3270934	GGACACGTTGGTTTATTGG		59	3270955	3270976	TACGATATCTCGATTTCCTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17260	FBgn0031498	FBtr0077653	3	1	1	65	2L	3038338	3038356	CCAGAGGACATAGAAACGG		59	3038385	3038403	GAGATGACCACAGTAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hrs	FBgn0031450	FBtr0089751,FBtr0089749,FBtr0089750	2	3	3	60	2L	2741915	2741933	TGAAGTGCAGATCGATGAG		59	2741955	2741975	GTTAACAAAGATCTCCACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17302	FBgn0031443	FBtr0077699	3	1	1	284	2L	2656123	2656143	TAAACAAGGAGTCGATAAGCC		59	2660458	2660479	CCCACAACTTAAATTGAATCCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15394	FBgn0031439	FBtr0113016	1	1	1	211	2L	2588892	2592138	CTCATTTGGAATCTCGGCT		59	2592371	2592390	GCGATGAGTGTTCATTTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9870	FBgn0031422	FBtr0077768	3	1	1	70	2L	2383990	2384008	GCTGCTATAGTCTGTTGGT		59	2384042	2384113	GTGAAGGAATAGCAAACCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15390	FBgn0031419	FBtr0077764	3	1	1	102	2L	2374808	2374883	ACTTACATCACATAAGGCAC		57	2374948	2374966	GAGAATACAGCTAACGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16995	FBgn0031412	FBtr0077758	1	1	1	90	2L	2308170	2308188	ATTTATATCGGGCCAAGCA		59	2308242	2308315	GACAGCAAATAATTGGCCC		59	NA	
Drosophila melanogaster	50	CG31670	FBgn0031375	FBtr0077870	3	1	1	189	2L	1952869	1954321	TTTACTTTAGTCCGCGTGG		59	1952698	1952716	TCCATGATCTTGGCTATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18131	FBgn0031343	FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934	3	4	6	63	2L	1500146	1500167	GCCAGCTTATATCTAATGACCT		59	1500036	1500123	GATATGTTGACTTGAGTGGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11555	FBgn0086856	FBtr0078128	1	1	1	60	2L	274575	274596	GAGATAATGCACATCCTTATCG		58	274615	274635	CCTTTCTGAAACGGATTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR32200	FBgn0052200	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG17162	FBgn0039944	FBtr0113724,FBtr0113726,FBtr0113723,FBtr0113725,FBtr0113722	1	5	5	60	XHet	67548	67566	TACTCACTTAAATCGCCCA		58	66298	66316	TTATAGACGTTTGATGCGG		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG1801	FBgn0031171	FBtr0077231	1	1	1	80	X	21179300	21179320	AGCCATGGATTCTATCTAGAG		58	21179167	21179258	ATCCTTACGCAAATTCTCC		57	NA	
Drosophila melanogaster	50	CG14234	FBgn0031065	FBtr0074790	1	1	1	103	X	19631527	19631545	AGTACGTGACCATTCTCAC		59	19631611	19631743	GCCGATTATCCAATTGATGG		59	NA	
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074573,FBtr0074575,FBtr0074574,FBtr0074571,FBtr0074570	3	5	6	171	X	18286786	18286878	CCTTGGCAGAGTACAAGTC		59	18286633	18286651	TCCACTTTCAGCAGATTCC		59	NA	
Drosophila melanogaster	50	X11Lbeta	FBgn0052677	FBtr0071493	2	1	1	116	X	10597389	10597407	ATCTCTACGAGTTCTCGGA		59	10597487	10597606	ACTGGATGTCAATGCTGTC		59	NA	
Drosophila melanogaster	50	CG15249	FBgn0030161	FBtr0112966	1	1	2	101	X	9782869	9782887	AATTTAGCGATCCAGGTCC		59	9782720	9782738	GTTCCTCGCTGTTACTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	trol	FBgn0001402	FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964	3	4	7	81	X	2386428	2386446	TAGTAATGATCGCAGACCG		58	2384862	2386383	TCCAACGTCGTTATTCTCC		59	NA	
Drosophila melanogaster	50	CG41527	FBgn0085670	FBtr0114117	3	1	1	61	U	3401255	3401273	ATTCGATACAAAGAGCGAC		57	3401298	3401316	AGGTACCATGAGAATAGCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11626	FBgn0038705	FBtr0113247	1	1	1	106	3R	15235692	15235769	AGTTATAGTGCTTCTATACCGC		59	15235835	15235854	CTTCCTTCCGAATAAAGCAG		58	NA	
Drosophila melanogaster	50	P5cr	FBgn0015781	FBtr0083713	3	1	1	62	3R	14855097	14855115	TTTCATCTGCGTAAAGCCA		59	14855140	14855159	ACGTGCTTGTATTTAAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpo	FBgn0000363	FBtr0083534,FBtr0083536,FBtr0100377,FBtr0083535,FBtr0083537	2	5	6	175	3R	13793462	13793481	ACGCCATAATGGAGAATCAG		59	13832725	13832808	TTCATAGCCCTCATAGGCT		59	NA	
Drosophila melanogaster	50	CG14864	FBgn0038311	FBtr0110811,FBtr0083128	2	2	2	60	3R	11093539	11093560	GTAAATAAACCGACCTTTGGAG		59	11093500	11093518	AGAAACTACAGGTGCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mura	FBgn0037705	FBtr0082118	1	1	3	145	3R	5372637	5372656	TGCAACGTCAATTTAAACGG		59	5368638	5372529	TGTACATCGCAATTTGGGT		59	NA	
Drosophila melanogaster	50	Dfd	FBgn0000439	FBtr0081621	1	1	1	120	3R	2627071	2627355	GATGAATGAGTGCATTCGT		58	2627439	2627457	CTGAGATCCCGGATAAGAG		58	NA	
Drosophila melanogaster	50	CG1208	FBgn0037386	FBtr0113197,FBtr0113196	1	2	2	117	3R	1662757	1662830	TTTAATTGGTATCGCAACGG		58	1662910	1662928	AATCGTAAGGAGCAACTGG		59	NA	
Drosophila melanogaster	50	CG33170	FBgn0053170	FBtr0089836	3	1	1	98	3L	22858910	22858981	TCACAGAACTATGAGGTCC		57	22859042	22859061	CTTGTTCTTGGTTTGATCCA		58	NA	
Drosophila melanogaster	50	Smc5	FBgn0052438	FBtr0078374,FBtr0078373	3	2	3	197	3L	21565422	21565496	TAAAGCAGCAACCAGAGAC		59	21565656	21565675	AAGTCATGTATTGCCTCTCG		59	NA	
Drosophila melanogaster	50	eRF1	FBgn0036974	FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177	1	6	6	80	3L	20344766	20344787	GGAGATTATCACGGATAAGTCC		59	20344828	20345922	TTGTAGCGTAAGATACCGC		59	NA	
Drosophila melanogaster	50	CG5103	FBgn0036784	FBtr0075132	3	1	1	64	3L	18286740	18286758	ATAGGCACTGAAATGGAGG		59	18286694	18286712	AAGACTAGGGCATTGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7510	FBgn0036741	FBtr0075182	1	1	1	80	3L	17619486	17619601	GCTATCCCATAGTTATGGCTC		59	17619643	17619661	GTGAGATAGGAGCCATCAG		58	NA	
Drosophila melanogaster	50	TpnC73F	FBgn0010424	FBtr0089585	1	1	2	161	3L	17040551	17040569	CGTTTGTACGATAAGCAGG		58	17040691	17041075	CTCCATGAATTCATCGAAATCC		59	NA	
Drosophila melanogaster	50	CG5018	FBgn0036578	FBtr0075484	1	1	1	157	3L	16219781	16219799	ATCCCAAAGAGCTTGTGAG		59	16219414	16219432	GTTGACAAGTTCGTTAGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10948	FBgn0036317	FBtr0075939	3	1	3	112	3L	12841550	12841568	ATGTACGAAGACTCCATGC		59	12840243	12841475	TTCAATCTGAGTGAATTGCG		58	NA	
Drosophila melanogaster	50	CG4328	FBgn0036274	FBtr0076008	3	1	1	86	3L	12285040	12285058	CAGTATGTGGTCAAACAGG		58	12284916	12284990	GCCATAGAAATCGTATCCC		57	NA	
Drosophila melanogaster	50	Fuca	FBgn0036169	FBtr0100588,FBtr0100587	2	2	2	60	3L	11513424	11513442	TATTCAATGCCACCAAGTG		57	11513301	11513400	AGCACAACATATCTGGCTC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG8600	FBgn0035765	FBtr0076883	1	1	1	240	3L	7327666	7327684	TTTCACTGAGCTGAAGGAC		59	7327372	7327390	TACTTAGATGTCGCTCTCG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7995	FBgn0035266	FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767	2	5	5	157	3L	1743701	1743719	CATCTCCACGTACTTCTCG		59	1743909	1743927	TTACATCCGTGATGTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34413	FBgn0085442	FBtr0112685,FBtr0112684,FBtr0112683,FBtr0112686	3	4	4	81	2R	20770530	20770605	CTTCCTGCAAGTGATAACG		58	20770649	20770668	AAAGTTCACTAGGATAGGCG		59	NA	
Drosophila melanogaster	50	wrapper	FBgn0025878	FBtr0071821	2	1	1	101	2R	18269324	18269342	CTCAAGTTCCGACAGATCC		59	18269406	18269489	ATAGATGAGTCCGTTTGTGG		59	NA	
Drosophila melanogaster	50	CG15122	FBgn0034457	FBtr0086466	2	1	1	60	2R	15397597	15397616	GACATGCATCCAATCTACGA		59	15397638	15397657	TAGAGTTGAAGAACTGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cora	FBgn0010434	FBtr0086507,FBtr0086509	3	2	4	184	2R	15124300	15124318	TTCAATAGGACTCTGTCCG		58	15124563	15125670	TCCTTATCAGCATCCTTCTC		58	NA	
Drosophila melanogaster	50	Lis-1	FBgn0015754	FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240	2	6	6	64	2R	12070571	12070592	GCTCAAATGATCAGACAATACG		59	12070617	12070702	GCGTAATTCAACCTTGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18568	FBgn0033888	FBtr0087608	3	1	1	62	2R	9859557	9859575	ATAAGCTAATCCTTGGCGA		58	9859513	9859531	CTATTTGATCGACCAGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4676	FBgn0033815	FBtr0087743	3	1	1	60	2R	9123630	9123648	CATTGTTATGCCGGAACTG		59	9123672	9123690	GGCCAACCATAATAACGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tou	FBgn0033636	FBtr0113066,FBtr0088091	3	2	5	80	2R	7477440	7477521	GATTACATGATGGGTACTGG		57	7477379	7477399	GTACTTGATTATCTCCGTGTC		57	NA	
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414	3	10	10	73	2R	5991854	5991872	TGTCGACAGTCGATAAGGA		59	5991906	5992234	CATATCATCGTAACGTTCTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	brp	FBgn0086376	FBtr0111001,FBtr0113488	1	2	2	182	2R	5424065	5424083	AAGAAGCTCATGGATACGC		59	5424438	5424530	GATCTTTAAGGCTTGTTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	Socs44A	FBgn0033266	FBtr0088784	1	1	1	60	2R	4015967	4015985	AACCCTGCATTATCGACTG		59	4016007	4016027	GTACTTAAGTTCCTCGAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	EcR	FBgn0000546	FBtr0086012,FBtr0086011,FBtr0086008,FBtr0086010,FBtr0086009	3	5	5	80	2R	1981445	1981523	CGTATAATGAGTCAACCCG		57	1981383	1981401	CGTGAGTATGGTTATCTCG		57	NA	
Drosophila melanogaster	50	bur	FBgn0000239	FBtr0081497	3	1	1	83	2L	21176599	21176682	AATAAGGTGTTGCTCCTGG		59	21176534	21176552	CTGATGAGGGTACAAAGCA		59	NA	
Drosophila melanogaster	50	Top3alpha	FBgn0040268	FBtr0081246	2	1	1	72	2L	19499084	19499155	AAGATTAAGGTTCTGCACAC		58	19499190	19499208	TATCGAAGAGTCGGTTTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4103	FBgn0028925	FBtr0080727	2	1	1	60	2L	15009374	15009394	CTCTCAATGTGATGAATGCTG		59	15009334	15009353	AGGACAATATCCCGAAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	osp	FBgn0003016	FBtr0089866	3	1	3	92	2L	14600871	14601145	TTTGAGCTACCAAGGTCTG		59	14600797	14600818	GTTATTTCTGATGATGCTGGTG		59	NA	
Drosophila melanogaster	50	Gdi	FBgn0004868	FBtr0079862	3	1	1	293	2L	9492856	9492876	ATTAAGCTCTACTCCGATTCG		59	9492501	9492519	GTCCAGAATGCAAATGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4495	FBgn0031893	FBtr0079405	2	1	2	106	2L	7182804	7182822	GAATCGGAAGATAGCGAGG		59	7182890	7183173	TACTCAATGATCTTCCTCTCG		58	NA	
Drosophila melanogaster	50	Rtnl1	FBgn0053113	FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039	1	7	7	111	2L	4994867	4994885	CTACTTGTCGCTCCTAACC		59	4994704	4994794	CTCCAGGTAATCCTTAAAGGG		59	NA	
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305	2	10	10	81	2L	3624268	3624289	GCTAATTTCCAATCTAGACGAG		58	3623866	3624229	GAATTCCTCGTTGATCTTTCTG		59	NA	
Drosophila melanogaster	50	Tak1	FBgn0026323	FBtr0077319	3	1	1	118	X	20393466	20393543	AGATCTACAAGGGTGAACG		58	20393366	20393384	CACTATGTACTGCATCGAC		57	NA	
Drosophila melanogaster	50	Tao-1	FBgn0031030	FBtr0074773,FBtr0074771,FBtr0074774,FBtr0074772	3	4	4	90	X	19465922	19466012	TGCTCGAGAATAAGATGGA		57	19465850	19465869	TCTTTAGTATGCTTCTCGTG		57	NA	
Drosophila melanogaster	50	CG11802	FBgn0030346	FBtr0073600	1	1	1	64	X	11765984	11766002	ATATACCGCAGTTTCTGCC		59	11765938	11765956	TGCATCTCGTGTATTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dsh	FBgn0000499	FBtr0073454,FBtr0073455	1	2	2	60	X	11251506	11251524	CACGACAGTATTATTGCCG		58	11251548	11251566	GGTTATTCTGGTCCAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Atg5	FBgn0029943	FBtr0071065	3	1	1	105	X	7216497	7216600	ATACAGACGATGACTTCACG		59	7216411	7216429	ACAGGTGTCGATAATTCGG		59	NA	
Drosophila melanogaster	50	torp4a	FBgn0025615	FBtr0070690	2	1	1	63	X	4543647	4543665	ATACATATTGCCGGTTTGC		58	4543544	4543620	AATTCATCTATTCTCGCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14418	FBgn0040354	FBtr0070565	3	1	1	72	X	2777245	2777263	ATCAGGAGCAGATTGTCTG		59	2777191	2777209	TTCTTCACCTGATCACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34110	FBgn0083946	FBtr0110797	3	1	1	83	3R	20995701	20995719	ATAACGCCTGTCTAAACGA		58	20995578	20995657	CGGAGGTTAAATCTTCATAGTG		58	NA	
Drosophila melanogaster	50	CG31111	FBgn0051111	FBtr0084790	3	1	1	60	3R	20881795	20881813	TTAAAGTATAAGCGGCGCT		59	20881603	20881774	TCTCCAGTAGATAACTCTTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp93a	FBgn0038859	FBtr0084030	2	1	2	144	3R	16955075	16955160	CTTTGCATGCATGTATTGC		58	16954949	16954967	CTCTTCAACATCAGTTGCG		59	NA	
Drosophila melanogaster	50	Ssdp	FBgn0011481	FBtr0083612,FBtr0083611,FBtr0083613	1	3	3	65	3R	14020957	14020975	AAGATCAAGGAGAGCATGC		59	14020910	14020928	GTAGTCCGGATGATCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31287	FBgn0051287	FBtr0083256	1	1	1	117	3R	12029565	12029583	AGTATGCTGATGTCTTCGA		58	12029663	12029739	GCTTGGTTACCAAATTTACG		57	NA	
Drosophila melanogaster	50	lds	FBgn0002542	FBtr0081758	1	1	1	91	3R	3747546	3747865	GAATCGCTAAAGGACCTCC		59	3747920	3747938	ATAAGCGATACCTTCAGGC		59	NA	
Drosophila melanogaster	50	CG9809	FBgn0037248	FBtr0078946,FBtr0078945,FBtr0078947	1	3	3	99	3R	249717	249737	GAAACCACCAAGGAAATTCTG		59	249579	249657	CGAACCCATACTTCATTCCA		59	NA	
Drosophila melanogaster	50	CG14455	FBgn0037175	FBtr0078543	2	1	1	60	3L	22680018	22680036	CTTTCAAGGTCATCCTCAC		57	22679976	22679995	TTAAGGTCCAGGAACTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32448	FBgn0052448	FBtr0078449	2	1	1	129	3L	21821272	21821290	TTAGTGGAGAAGACGACGA		59	21821095	21821179	TAATCTTGTTCGGCTTGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32444	FBgn0043783	FBtr0078424	2	1	1	94	3L	21630406	21631259	TATCCAGGACAAATTCCAGC		59	21631316	21631334	GAAATATCACTCCCTCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fng	FBgn0011591	FBtr0078267	3	1	1	83	3L	20936717	20936735	ACGACGAAGAACTATCACG		59	20929803	20936670	GAAGAACCAGGTCTGATCG		59	NA	
Drosophila melanogaster	50	CG18223	FBgn0036832	FBtr0075070,FBtr0075071	1	2	2	60	3L	18913132	18913152	CATATCGAGAACCTACATCCT		58	18913033	18913110	TACGATCTTGCGCTTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7589	FBgn0036727	FBtr0075221	1	1	1	80	3L	17465633	17465714	CTGGAAAGACCATTTGAATACG		59	17465752	17465773	CAGGAAGTACACATAAATACGC		59	NA	
Drosophila melanogaster	50	TpnC73F	FBgn0010424	FBtr0089585	2	1	2	162	3L	17040550	17040568	CCGTTTGTACGATAAGCAG		58	17040691	17041075	CTCCATGAATTCATCGAAATCC		59	NA	
Drosophila melanogaster	50	rhea	FBgn0020254	FBtr0076627	3	1	1	88	3L	8562029	8562047	TAACTGCACTAAGTTGGCC		59	8562099	8564083	CATTCAGCACCATAACCCT		59	NA	
Drosophila melanogaster	50	CG34264	FBgn0085293	FBtr0112459	3	1	1	66	3L	317251	317269	TGGACGACCCTAATATGGT		59	317299	317317	AAGTTTCGCTTCAGAAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MAN1	FBgn0034962	FBtr0072166,FBtr0072167	2	2	2	60	2R	19922796	19922815	GAAGTTCAACTATCCCACTG		57	19922836	19922856	AGTTAGCCTTTCTTTCCTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3803	FBgn0034938	FBtr0072208	3	1	1	227	2R	19841234	19841252	ATAAAGCCCATCAGCACTC		59	19840910	19840987	CTTTAGCTTGTACTCTGGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9850	FBgn0034903	FBtr0100330,FBtr0100329	3	2	2	92	2R	19655723	19655744	CCTATATCATCTATCCGGAGGT		59	19654947	19655670	TGAAGTAGCGTTTGACCTG		59	NA	
Drosophila melanogaster	50	CG30389	FBgn0050389	FBtr0071633,FBtr0071632,FBtr0071634	1	3	3	80	2R	17037702	17037783	AAGTGGAACAAGAGTACCG		59	17037640	17037661	TTAATAGAATCTCGGGATCAGG		58	NA	
Drosophila melanogaster	50	CG10934	FBgn0034263	FBtr0086859	1	1	1	60	2R	13610345	13610363	GATAATGGTCACTCATGCC		57	13610387	13610405	ATAGTATCTGTACGTCCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAP54D	FBgn0034249	FBtr0086900,FBtr0086901	3	2	2	100	2R	13477349	13477420	GGAGAAGAATCTCACCCAG		59	13477267	13477285	AATTCAGTGGTTTGTCGTG		58	NA	
Drosophila melanogaster	50	Cyp6a8	FBgn0013772	FBtr0087455	3	1	1	117	2R	10775311	10775389	TAGATGAAACTCTGCGACTG		59	10775213	10775231	ATGATGACCGATTGACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6a9	FBgn0013771	FBtr0087457	3	1	1	77	2R	10767788	10767806	TGGAAAGTACAACGGAGAG		58	10767676	10767748	AGGGTTTCCGATATAACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8531	FBgn0033918	FBtr0087538	3	1	1	80	2R	10145863	10145943	GATTCATCAAAGAGCGACC		58	10145986	10146005	ATAGGTGTACTCTATCCGCA		59	NA	
Drosophila melanogaster	50	Dmn	FBgn0021825	FBtr0088641	1	1	1	110	2R	4780392	4780413	CAGAAGATTACGGAACTATACG		58	4780484	4780568	TGCATATTTATGGAGGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	brat	FBgn0010300	FBtr0081159,FBtr0081160,FBtr0081158	2	3	3	60	2L	19170833	19170851	CATCTTTGATCAGAACGGC		58	19170875	19170893	GAACTCGAGGTGCTTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bun	FBgn0010460	FBtr0080378	3	1	6	171	2L	12482649	12482667	ACCACAGTCGTCAATATGG		59	12458211	12477120	ACTTGACCAGATCCATTGC		59	NA	
Drosophila melanogaster	50	Mt2	FBgn0028707	FBtr0110911	2	1	2	142	2L	12096646	12096713	TATGCCCAATTGGATGGAC		59	12096819	12096837	TGAAGCTTTGTGACTTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9541	FBgn0032083	FBtr0079785	2	1	1	81	2L	8971317	8971335	CTTGGAACTCTTTCGTGAG		58	8971185	8971272	GTCTCCATCAACAATCTGC		58	NA	
Drosophila melanogaster	50	Acp24A4	FBgn0051779	FBtr0110767	2	1	1	74	2L	3693707	3693795	TGAAATCTGTGGATTACCCG		59	3693652	3693670	TGAGCATCATAAGACCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11023	FBgn0031208	FBtr0089256	1	1	1	60	2L	8571	8668	ACAGGATGATAAATCGACGG		59	8688	8709	GTCTTCGGTAGTTATGTGTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	tRNA:V4:89BC	FBgn0012011	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR32330	FBgn0052330	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-305	FBgn0067700	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	su(f)	FBgn0003559	FBtr0113732,FBtr0113736,FBtr0113733,FBtr0113734	1	4	5	139	XHet	78220	78304	CCACATTGGTCTATGTTCAG		58	78406	78424	ATACTCCATTAAAGCAGCG		57	NA	Nonspecific
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210	1	5	8	85	X	21247686	21250626	ACATGACGCTTATGAAATGG		58	21250674	21250692	AAAGTGGCCATAGAAGGTC		59	NA	
Drosophila melanogaster	50	Sdic3	FBgn0052823	FBtr0089465	3	1	1	115	X	20087949	20087967	TAAGCGTCTACAATGTGCA		59	20085962	20087870	ATCAAATGCAAGCACATCG		59	NA	Nonspecific
Drosophila melanogaster	50	wupA	FBgn0004028	FBtr0074521	1	1	7	81	X	18006019	18006040	CAGTAAGATACTGAAACTGGAG		57	18000953	18005980	GAGATCGTTGATCTCATAATCC		58	NA	
Drosophila melanogaster	50	CG32556	FBgn0052556	FBtr0074477	3	1	2	187	X	17578306	17578324	ATTCAAGAGGTCTTCGGAC		58	17571526	17578155	TTCACGTAGGTCTGATCTG		58	NA	
Drosophila melanogaster	50	caz	FBgn0011571	FBtr0074217	1	1	2	93	X	16186059	16186077	GGACACCATCTTTGTCTCC		59	16186132	16186236	CTTGTCTTTCTTGATGATGCC		59	NA	
Drosophila melanogaster	50	CG9170	FBgn0030716	FBtr0074154,FBtr0074153	2	2	2	90	X	15875695	15875780	GAAGATATGCTACTCGGAGG		59	15875624	15875642	TATGGCATCTAGTGGATGG		58	NA	
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	2	9	9	111	X	15788791	15788877	GAGTTACCGAATATGGCGA		59	15788952	15788970	TTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	Chc	FBgn0000319	FBtr0112798,FBtr0074180,FBtr0112797,FBtr0074182,FBtr0074181,FBtr0074179	3	6	6	95	X	15722670	15722757	CTTTATCAGTGTTACGACTTGC		59	15722596	15722615	CTGAATCAAATAGGGCATGG		58	NA	
Drosophila melanogaster	50	mRpS25	FBgn0030572	FBtr0073945	3	1	1	74	X	14476545	14476563	GATCACCTGGTTAAGGTGG		59	14476346	14476364	GTCCTTGCTCTCCTTTAGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG13404	FBgn0030559	FBtr0073921	3	1	1	67	X	14159851	14159869	GTTACTATACGGACTGGGC		59	14159715	14159733	CATAATCATGTTCGCCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11674	FBgn0030551	FBtr0073926	3	1	1	61	X	14119284	14119303	AATCAAGCTGTCTAGAGGAC		58	14119242	14119260	CTTTGTCAGGCAAATCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ste:CG33239	FBgn0053239	FBtr0073876	1	1	1	60	X	13951420	13951439	GTATTTCAGCGAGATACTGG		57	13951379	13951397	CAAGCCAGAGGAACTATCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32628	FBgn0052628	FBtr0113442	1	1	2	174	X	13609631	13609791	ATCGTCGTAAGAAGTCCAC		59	13609929	13609947	TAACCATTATGTCCGGACG		59	NA	
Drosophila melanogaster	50	CG1764	FBgn0030467	FBtr0073796	3	1	1	98	X	13189613	13189631	AGTTTCACCAATGAGGAGG		59	13189389	13189407	GTACTTCAGCCTCTTGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	HDAC4	FBgn0041210	FBtr0100425,FBtr0073797	3	2	3	103	X	13165612	13170475	TCATGGAGCTCAAGAAGAG		58	13165527	13165548	CTCCAATTGAAGTTTATGCTCC		59	NA	
Drosophila melanogaster	50	CG32642	FBgn0052642	FBtr0073713	1	1	1	60	X	12853404	12853424	GTATAGTGATTATTCGGGCTC		57	12853446	12853464	TGCATCGTAGTTGACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Smr	FBgn0024308	FBtr0073707,FBtr0073706,FBtr0073708	1	3	3	84	X	12604887	12604906	ATTATCTTGGACAGAAGCTG		57	12604744	12604840	TTGGATTCACTAACATCCG		57	NA	
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0100303,FBtr0100302	1	2	10	157	X	11856301	11856319	TTCACCGGAATGTTTAGTG		57	11848301	11856054	TTGATTGAGTTCGAATCCC		57	NA	
Drosophila melanogaster	50	SelG	FBgn0030350	FBtr0073570	2	1	1	170	X	11781587	11781668	GCCATTAAGCAGCTATTCC		58	11781802	11781820	TCTTAGTCCACCTGATCCT		58	NA	
Drosophila melanogaster	50	CG10347	FBgn0030342	FBtr0073602,FBtr0073603	1	2	2	60	X	11747672	11747693	TCTGGATGAGGTTATATTCGAC		59	11747633	11747652	TGCACTTAAATCATCTCCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tim8	FBgn0027359	FBtr0073482	3	1	1	94	X	11262534	11262555	GGTCAATTTGTAGATTGCTCAC		59	11262610	11262628	AATCAAGAGGAACTCCTGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Kap3	FBgn0028421	FBtr0112931,FBtr0112934,FBtr0112933,FBtr0112932,FBtr0073459	1	5	5	80	X	11231087	11231171	GTGCAATATAAGATTGGATCGC		59	11231028	11231048	CAGCTCATTTCTCATTGTCTC		59	NA	
Drosophila melanogaster	50	CG15200	FBgn0030278	FBtr0073445	1	1	1	67	X	11077355	11077373	TAATGGAGAAGCCTTCTGC		59	11077404	11077422	AATCGCCCTTAATTCTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ran	FBgn0020255	FBtr0073471	2	1	2	83	X	11040023	11040041	GTCGATATCAAGGATCGCA		59	11039880	11039979	GGCAGAAATATCGTAATACTGC		59	NA	
Drosophila melanogaster	50	Ork1	FBgn0017561	FBtr0073405,FBtr0073404	3	2	2	97	X	10776329	10776347	GATCATGATCGCGTATTCG		58	10776184	10776268	TGTAGATCGCTTCAAACGT		59	NA	
Drosophila melanogaster	50	CG32669	FBgn0052669	FBtr0073412	1	1	1	60	X	10738687	10738707	CAATCTGTCGTATGTGTTGTC		59	10738647	10738667	ATAGAAGACCGGAATGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	1	8	9	94	X	10692567	10692660	GAATAAGGGTGAAATTTGCC		57	10692492	10692510	GCATGATCCGTTTAATGGT		58	NA	
Drosophila melanogaster	50	CG2124	FBgn0030217	FBtr0071491	3	1	1	60	X	10491683	10491702	CAATTACACGCAGTACATCC		58	10491725	10491743	ACGATCGGTATTATTCAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32685	FBgn0052685	FBtr0071489	2	1	1	84	X	9967962	9967981	TACATCAAACTGGACGTGAG		59	9967432	9967915	ATGCATTATCGTCCGTAGC		59	NA	
Drosophila melanogaster	50	l(1)G0232	FBgn0028341	FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407	3	6	6	85	X	9524046	9524066	GCCGTCGGATTATATTAATGC		59	9523916	9524001	TCTTTGGTAATGGACCTTGAG		59	NA	
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274	3	10	10	166	X	8768356	8768374	GAGGATGAGAACGAGAACG		59	8768131	8768227	TCTTGTTTCAGAGCCTTGAG		59	NA	
Drosophila melanogaster	50	Ogg1	FBgn0027864	FBtr0071223	3	1	1	154	X	8585439	8585460	CCGTCGACATTCATATTTACAG		59	8585574	8585652	AAAGAGAATAGCTTGAGCCC		59	NA	
Drosophila melanogaster	50	CG11190	FBgn0030035	FBtr0071175	2	1	1	60	X	8299848	8299868	CTATTCCGTCTACGATATGCA		59	8299808	8299826	GACATTAAACAGCCGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubc-E2H	FBgn0029996	FBtr0071114,FBtr0071112,FBtr0071113	1	3	3	62	X	7983587	7983605	GCGTTGTACGATCTATCGA		59	7983543	7983561	ATTGGGATATGTGAGCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0155	FBgn0026664	FBtr0071093	3	1	1	85	X	7815075	7815095	CGCTTATCACAAAGATTCTGG		59	7815142	7815160	AAATGAGATAGTGGCCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18624	FBgn0029971	FBtr0071140,FBtr0071141	1	2	2	104	X	7787312	7787330	GTCTTGGGACTGGATAAGC		59	7787226	7787244	GAACATGGTCATACGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34417	FBgn0085446	FBtr0112705,FBtr0112704	2	2	5	85	X	6481126	6482106	CAGGAATATGAGAACGTCC		57	6482155	6482173	AAGAAATGGTGTATCAGCG		57	NA	
Drosophila melanogaster	50	CG34417	FBgn0085446	FBtr0112706,FBtr0112707,FBtr0112704	3	3	5	89	X	6448796	6448951	CACCACCAGATAACAAGCT		59	6449002	6449022	TAGTAGGAGGAGTAGTTGGTG		59	NA	
Drosophila melanogaster	50	CG4119	FBgn0028474	FBtr0070799	3	1	1	99	X	5563172	5563190	AAGAAGATAGAGGCCACAG		58	5563253	5563346	TATCATCGTAGTCTAGCGG		57	NA	
Drosophila melanogaster	50	Rnp4F	FBgn0014024	FBtr0070752,FBtr0112876,FBtr0112875,FBtr0070753	2	4	4	80	X	5214528	5214600	AAATAATGGGCTATCCGGG		59	5214466	5214485	CACCATTGTATTCGCTTTCC		59	NA	
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070738,FBtr0070739,FBtr0070740,FBtr0100408	2	4	4	238	X	4962659	4962677	GATTCAACGACACCTTCGA		59	4962975	4962993	CTTCAGGTGCAGATAGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12688	FBgn0029707	FBtr0070653	1	1	1	70	X	4275985	4276003	GACCAAGAAGATCCAAGCA		59	4277107	4277125	TCGGAGTGTCCTCTAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514	3	9	14	87	X	3215172	3215190	CGTTTCTATATCGCTCCGA		59	3215240	3219968	TCTTTAAACCTTTCGCTAGC		58	NA	
Drosophila melanogaster	50	boi	FBgn0040388	FBtr0070458,FBtr0070457	1	2	3	147	X	2340562	2340580	AAGCGGACTTTGTTACCTC		59	2339616	2340452	CCAGAGTTGTTCTTATCGGA		59	NA	
Drosophila melanogaster	50	CG4199	FBgn0025628	FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070337,FBtr0070333,FBtr0070335	2	6	6	60	X	1961216	1961235	TAAATCGTAACGGATCCGTG		59	1961175	1961193	TACACATCGGGTACATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nmdar2	FBgn0053513	FBtr0070288,FBtr0091454,FBtr0091453	1	3	3	130	X	1385972	1386200	GGGAAGAGATTGGAGTGTG		59	1385860	1385881	GAGGAATGTGATCTTCAAATGG		59	NA	
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	3	8	8	61	X	551391	551410	CATTATCTCATGGGATGCAG		58	551433	551452	ATATCAGCTCAAACAGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SP71	FBgn0029128	FBtr0100136,FBtr0100135	2	2	2	81	X	94411	94493	GCTATGATGTTTCTGTTCACTG		59	94535	94553	TAAATGCGTCCATTGAACG		58	NA	
Drosophila melanogaster	50	CG40769	FBgn0085516	FBtr0113929	2	1	1	135	U	8483497	8483516	ATCCGTACCAGAAGTTTCTG		59	8483381	8483399	AAATGTGGTGACAGGAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40820	FBgn0085523	FBtr0113936	1	1	1	112	U	7044868	7044886	GTTGTACGGCATGATTCAC		59	7043624	7043642	TAATCGATAGTGGGCTTGC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG32016	FBgn0052016	FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232	1	6	6	82	4	974520	974659	GCACTACTCTCAAGAATTGC		58	974457	974475	GAGTTGGAGAGTTACCGTG		59	NA	
Drosophila melanogaster	50	CaMKI	FBgn0016126	FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065	3	6	7	103	4	467819	467838	GAAAGGAAGAATCTCTGGAG		57	470592	470883	ATTTGGATGAGTTAACCGC		58	NA	
Drosophila melanogaster	50	CaMKI	FBgn0016126	FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065	2	6	7	96	4	467853	470559	TTTGAGAAGGTTCAGTGCA		59	470889	470910	CTCATACGTTTCTAAGAGTTGC		59	NA	
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450	2	8	8	166	4	157780	157853	TCGAGCAACCTTAAGACAC		59	158041	158059	TAAACCAATTGCTTGCAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	snoRNA:Psi18S-1295	FBgn0083055	FBtr0113584	1	1	1	60	3R	16648403	16648422	CAGAATCGGACATTATTCCC		58	16648444	16648463	CCTGAACCATGTGATATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bxd	FBgn0020556	FBtr0083344	1	1	4	60	3R	12571323	12571343	CGATCTTATTAGCATTCGCAG		59	12571283	12571302	AAATTGGGCGTTCTAATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	2	14	14	109	3R	27690344	27690863	AAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	1	14	14	90	3R	27691897	27691915	ATACTGCACCAGATCTTCC		58	27691743	27691843	GATATTGGATGAGGGCCTG		59	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	3	14	14	90	3R	27691897	27691915	ATACTGCACCAGATCTTCC		58	27691743	27691843	GATATTGGATGAGGGCCTG		59	NA	
Drosophila melanogaster	50	rod	FBgn0003268	FBtr0085795	2	1	1	80	3R	27411998	27412017	TTATGCCGAAGATATCTCGA		58	27412059	27412148	GTTCGCTGTCAAGAATATCC		58	NA	
Drosophila melanogaster	50	zwilch	FBgn0061476	FBtr0085777	2	1	1	95	3R	27037281	27037361	CTGGCAAATGTTTACAACGA		59	27037205	27037225	GTCCATAACATCACTTAGCTG		58	NA	
Drosophila melanogaster	50	Ctr1C	FBgn0062411	FBtr0085750,FBtr0085749	3	2	2	60	3R	26789705	26789723	CACTGACTCTTTCTTGCCT		59	26789663	26789682	AATTTCAGGGCCTCATAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31036	FBgn0051036	FBtr0114571,FBtr0085501	2	2	2	80	3R	25736317	25736401	AAATCTGAACCCTACATCAGG		59	25736442	25736461	GTTAAAGAATCCAGCCTGTC		58	NA	
Drosophila melanogaster	50	CG7598	FBgn0039689	FBtr0085473	2	1	1	60	3R	25563431	25563452	TCTACCACTATGTTCTGTACAC		58	25563472	25563491	AAGGGAATCTTCGCTATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2010	FBgn0039667	FBtr0085427	3	1	2	129	3R	25321408	25321426	TCCAAATCGCGAACTAGAG		59	25321519	25322735	AGCTTCTCAATGGTCAGTC		59	NA	InUTR
Drosophila melanogaster	50	CG5611	FBgn0039531	FBtr0085199	2	1	1	63	3R	23460978	23460996	AATGCCTACAACAAACCAG		58	23460933	23460954	CTGAGGTAACATTCATGATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TfIIA-L	FBgn0011289	FBtr0085155,FBtr0085156,FBtr0085154	3	3	3	93	3R	23081685	23081766	ACGATAAGATCACCAGGTC		58	23081822	23081841	GATTTCTGGAACACGTAGTC		58	NA	
Drosophila melanogaster	50	CG14550	FBgn0039405	FBtr0084974	3	1	1	151	3R	21883447	21883465	CCTCGTATACGTGACTTGG		59	21883314	21883333	TCGATAGATTTATGGCAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14545	FBgn0040602	FBtr0084913	2	1	1	61	3R	21676487	21676505	GAGAGCATTGAGACTACGA		58	21676444	21676462	GACATCGGTGTACATAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5028	FBgn0039358	FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290	2	5	5	107	3R	21507673	21507691	ACATGACCAATCTGTACGG		59	21507762	21507839	CAAAGATGGCGTAATGGTC		58	NA	
Drosophila melanogaster	50	Fur1	FBgn0004509	FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986	1	5	6	103	3R	21180026	21181954	GCTATATGGCACAAATCACAC		59	21179943	21179961	ATTGAACTGGTTCGACTGG		59	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0084683,FBtr0100635,FBtr0084685	1	3	17	91	3R	20521093	20521111	GGACATTAAGGACGAGACG		59	20521837	20527818	GGTGTTCATCTAAGTCATCGA		59	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	3	5	6	83	3R	20045868	20045949	CTAGAGATTACTGGCTGCG		59	20045803	20045821	GTTGTCGTTCAGGTAGAGG		59	NA	
Drosophila melanogaster	50	AP-1sigma	FBgn0039132	FBtr0084496	3	1	1	99	3R	19785068	19785086	CATTCATCGCTATGTGGAG		58	19785214	19785234	CTCATCCAGGATAAAGTATGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG33111	FBgn0053111	FBtr0084529,FBtr0084530,FBtr0100312	3	3	3	121	3R	19633221	19633304	AATTCACAATCTCACCAGC		58	19633118	19633136	GGATCTTGAAGAGCTTTCG		58	NA	
Drosophila melanogaster	50	CG10175	FBgn0039084	FBtr0084423,FBtr0084421,FBtr0084422	2	3	3	98	3R	19350515	19350588	ACAGGAGCAAGAAGATTCC		59	19350435	19350453	CATGTTCTTATGCGGACAG		58	NA	
Drosophila melanogaster	50	wge	FBgn0051151	FBtr0110835,FBtr0084329,FBtr0084328	3	3	3	86	3R	18539557	18539638	CAAGGATACGATCCTCGAG		59	18539489	18539507	TACTGCTGACTCCAGTAGG		59	NA	
Drosophila melanogaster	50	CG7084	FBgn0038938	FBtr0084202,FBtr0084201	3	2	2	90	3R	18128384	18128492	CTATATGGGCGATACGTACG		59	18128545	18128563	CGAATACACAATGATGGGC		58	NA	
Drosophila melanogaster	50	CG6439	FBgn0038922	FBtr0084190	1	1	1	156	3R	17843782	17843800	GACTTCGAGTGCTACTTCC		59	17843587	17843605	TCATGTTAAGGGTCTGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	1	22	22	84	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202454	17202549	TTCAGGAATACGATAGCGT		58	NA	
Drosophila melanogaster	50	Calx	FBgn0013995	FBtr0083999,FBtr0084000,FBtr0083998	2	3	3	146	3R	16838011	16838032	CTTTGTGGTATCCATATTCGTG		59	16838139	16838225	GCGAATGTATCTGGTATGC		58	NA	
Drosophila melanogaster	50	CG17199	FBgn0038775	FBtr0083874	1	1	1	60	3R	16034201	16034219	CAACACATGAAGATGGTCG		58	16034159	16034177	CTGACAGAGTACAGGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14299	FBgn0038651	FBtr0083681	2	1	2	80	3R	14578389	14578469	GCTATTGGCTGATCAAATCAG		59	14578329	14578348	TCGGTATATGGGATTAGCCA		59	NA	
Drosophila melanogaster	50	CstF-64	FBgn0027841	FBtr0083660	3	1	1	60	3R	14485969	14485987	GCTAATGCTCAATCCTCAG		57	14486010	14486029	GATCCTCATAACCACCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	koko	FBgn0051232	FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629	3	5	5	84	3R	14229544	14229623	TACGATGAGTTCCTCATTGC		59	14229670	14229688	TGACATCGCGTATCTTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	repo	FBgn0011701	FBtr0083564	3	1	1	71	3R	14063741	14063759	TACATCAAGACGAGCACTC		59	14063794	14063812	GTAGCTAGTGAATGGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8907	FBgn0038466	FBtr0083372	1	1	1	107	3R	12835620	12835699	TAAAGACGCTAAGCAAGGG		59	12835770	12835788	CATACTGATCCTTGGCCTG		59	NA	
Drosophila melanogaster	50	CG31274	FBgn0051274	FBtr0083369	1	1	2	84	3R	12819313	12819331	ACACTTTAATCCTGGACCG		59	12819378	12819461	TTGTTGATCCACAAGATCCT		58	NA	Nonspecific
Drosophila melanogaster	50	Ahcy89E	FBgn0015011	FBtr0083378,FBtr0083379	1	2	2	123	3R	12804736	12804817	ATTGATGTGAATGGCTTGC		59	12804631	12804649	AATTCACCAGTCTTCCCTC		58	NA	
Drosophila melanogaster	50	Rbf2	FBgn0038390	FBtr0083213	2	1	1	60	3R	11792939	11792959	GAGCTAAATCAAAGACTTCCC		58	11792979	11792999	TCTCCTTGTCTTCTGTTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204	2	6	8	195	3R	11782022	11785052	GACTGATGAGGAACAATGG		57	11785211	11785229	CCAATCGTTGTTAGTCGAG		58	NA	
Drosophila melanogaster	50	CG5302	FBgn0038351	FBtr0083149	3	1	1	82	3R	11463090	11463273	TCTGATCACGAATCAGTAGC		59	11463312	11463336	CTATAGGTACAGTAACTATCGTGAC		59	NA	
Drosophila melanogaster	50	CG18519	FBgn0038348	FBtr0083153	3	1	2	92	3R	11366295	11366382	GATCTTATAAGATCTTGCCCAG		58	11366224	11366242	CAATCCTGTGCTGAATGTC		58	NA	
Drosophila melanogaster	50	CG14870	FBgn0038342	FBtr0083145	2	1	1	72	3R	11307885	11307903	TTTAGTTTGAGCATCGTGG		58	11307939	11307957	GGAAGACGAACTCCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31303	FBgn0051303	FBtr0083047	3	1	1	141	3R	11026449	11026469	CAAGCGAAAGAATAGCAACTC		59	11026571	11026590	GTTATTGAGATGATTGCGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gyc88E	FBgn0038295	FBtr0083028,FBtr0083027,FBtr0110961	3	3	3	116	3R	11013199	11013217	TTCAGCAGAGATCTCATGC		59	11013295	11013377	CTCATCCAACAATCTCATGGA		59	NA	
Drosophila melanogaster	50	CG6904	FBgn0038293	FBtr0083037,FBtr0083035,FBtr0083036	2	3	3	95	3R	10968577	10968689	CTGGGCATTTACTACAGAC		57	10968500	10968520	GTTGTTCTTCGATCCATAGAG		58	NA	
Drosophila melanogaster	50	dpr9	FBgn0038282	FBtr0089376	1	1	1	80	3R	10888195	10888854	CTGAATGTCGTTGAACCCT		59	10888133	10888154	GGTAAGGTTTATAGTGGAACCA		59	NA	
Drosophila melanogaster	50	Nsf2	FBgn0013998	FBtr0082883	1	1	1	155	3R	9663228	9663246	ATCATCACACTGGTCTCCT		59	9662456	9663111	GTCTTTGAACTGAAAGACGAG		59	NA	
Drosophila melanogaster	50	CG9611	FBgn0028487	FBtr0082846,FBtr0112939,FBtr0082847	1	3	5	157	3R	9522676	9522694	AAGACTCTGCACGATAGAG		58	9522057	9522557	CGTAGTTTGTATCTATCCGGA		58	NA	
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	3	8	8	284	3R	9504401	9504476	ACACGACGTAAATCAGGAG		59	9504723	9504742	TTTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG7966	FBgn0038115	FBtr0082715	2	1	1	81	3R	8875356	8875444	TGGGATAAGCAGTTCTATCC		58	8875294	8875312	TTCCTCCATTCACAGTGTC		59	NA	
Drosophila melanogaster	50	granny-smith	FBgn0040493	FBtr0082728,FBtr0082730,FBtr0082729	2	3	3	122	3R	8785059	8785077	TAGGGATAACTTGCATGCC		59	8784891	8784910	GCATCCGTGTTATTGATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4830	FBgn0037996	FBtr0082625	3	1	1	91	3R	8035668	8035686	ACCTACATTATGCCCACAG		59	8035483	8035615	TGCTTAAGAGTAGATTCCTCG		59	NA	
Drosophila melanogaster	50	ninaG	FBgn0037896	FBtr0082404	3	1	1	93	3R	7245310	7245473	GTAGATGCTAGTGTACTACCC		58	7245237	7245255	TCTTCAGAATCCAAGAGGC		58	NA	
Drosophila melanogaster	50	CG17721	FBgn0037885	FBtr0082354	1	1	1	60	3R	7061432	7061451	TATTCCCATAGAAAGTGCCT		58	7061474	7061492	AGTCACCGGCTATATTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp12e1	FBgn0037817	FBtr0082249	2	1	2	106	3R	6261642	6261660	TTGGTTTGGAAACTAGCCT		59	6261730	6261806	TACAAGAGTAGGATCCGCT		59	NA	
Drosophila melanogaster	50	topi	FBgn0037751	FBtr0082135	1	1	1	91	3R	5602336	5602354	GCTTAGTCGCTACTTTGTG		58	5602468	5602487	AGTAGTGAAAGGAGGTACAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	MED6	FBgn0024330	FBtr0082162,FBtr0082161	3	2	2	99	3R	5592834	5592906	CATCTGCACAACATGATCG		59	5592753	5592771	CTTCCGAGGGATTATGACG		59	NA	
Drosophila melanogaster	50	CG8043	FBgn0037610	FBtr0081902	2	1	1	63	3R	4503760	4503778	ATCGAGAAGGTTCTCAACG		59	4503805	4503823	GTTCAACATAACAGCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DppIII	FBgn0037580	FBtr0081840,FBtr0081841	2	2	2	179	3R	4171063	4171081	AGATTCCTGTTCTTAGGGC		58	4171282	4171301	CGGATGCCTTTACTATAGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9603	FBgn0040529	FBtr0081855	1	1	1	141	3R	4166245	4166263	GAGTGTTCCCAAGAAGGAG		59	4165784	4165802	ATGTTGTCCAGGTATCCAG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7878	FBgn0037549	FBtr0113205	2	1	1	90	3R	3949751	3949771	AATGGAGGTCAAGAAGTACTC		59	3949885	3949903	CTCCAAGTCGGATATCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Antp	FBgn0000095	FBtr0081652,FBtr0081650,FBtr0081647,FBtr0081654,FBtr0081653,FBtr0081655	3	6	11	159	3R	2724257	2734249	TTGGTAAGTGTCAAGAACG		57	2724116	2724134	CAAATCTTTATCTGGCGCT		58	NA	
Drosophila melanogaster	50	Pi4KIIalpha	FBgn0037339	FBtr0078756,FBtr0078755,FBtr0078757	2	3	3	162	3R	1385036	1385113	CCTTCCTCTAAAGACTGGC		59	1384892	1384913	GTTGCGTATGATATAATCGAGC		59	NA	
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078812	1	1	15	117	3R	1118452	1118470	GATTCAAGAGGACACCGAG		59	1117793	1118373	CTTTATAAGCTCCCAGGACTC		59	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-2566	FBgn0086661	FBtr0091666	1	1	1	66	3L	18889359	18889377	GTTGAATTACCTGAGTGGG		57	18889311	18889329	AATTAGATGGTTTGCAGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nrm	FBgn0005629	FBtr0111148	3	1	2	111	3L	23017168	23017187	TTATCATACTGGTTGCTGCT		59	23017259	23018195	TCCGTGAGATATTTATCCTGG		58	NA	
Drosophila melanogaster	50	Arf79F	FBgn0010348	FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572	2	6	7	85	3L	22862823	22862841	TTAGCTTTACAGTGTGGGA		58	22862563	22862777	GATAAGACCTTGTGTATTCTGG		58	NA	
Drosophila melanogaster	50	mael	FBgn0016034	FBtr0089631,FBtr0089633,FBtr0089632	1	3	3	117	3L	22718019	22718093	GATGTCCCATGATCTGGAG		59	22718174	22718192	CAACGAATATTCGCATGCC		59	NA	
Drosophila melanogaster	50	CG14456	FBgn0037176	FBtr0078518	3	1	1	84	3L	22680635	22680653	AGGACATCAAGTTCTGGAG		58	22680701	22680719	ATGGAGAAGTTCAGATGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hr78	FBgn0015239	FBtr0078392,FBtr0078390,FBtr0078389,FBtr0078391	3	4	4	80	3L	21488570	21488706	GACATTGATGTTCGCTACC		58	21488508	21488527	GGAATATCTGGCGAATAGCT		59	NA	
Drosophila melanogaster	50	Hr78	FBgn0015239	FBtr0078392,FBtr0078390,FBtr0078389,FBtr0078391	2	4	4	80	3L	21488570	21488706	GACATTGATGTTCGCTACC		58	21488508	21488527	GGAATATCTGGCGAATAGCT		59	NA	
Drosophila melanogaster	50	CG5274	FBgn0036987	FBtr0078232,FBtr0078231	3	2	2	67	3L	20420641	20420660	CGATAGACAGCAATAAGCTC		58	20420593	20420614	CGCACAAGTTGGATAATTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5282	FBgn0036986	FBtr0078233	2	1	1	178	3L	20418118	20418136	TGGAGATTTCGATGCTCAG		59	20417905	20417923	CAGGTTGAGCAAGATTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Csas	FBgn0052220	FBtr0074911	1	1	1	80	3L	19981544	19981564	CCAAGTATATTCAAGAGGCTG		58	19981429	19981503	ATCGCAGATAATGTGATCTC		57	NA	
Drosophila melanogaster	50	CG34258	FBgn0085287	FBtr0112452	1	1	1	113	3L	19944749	19944767	ATAGTTATCCGGACTGCCT		59	19944600	19944618	AGAACTTCCTTCCGATCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14104	FBgn0040786	FBtr0074926	1	1	1	63	3L	19800183	19800201	AATGAAACGTCAGAGGGTC		59	19800138	19800156	TTAGGTCGTTGTACTCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075007	2	1	11	127	3L	19300104	19300122	ACACAAATGTGACATTGGC		59	19299933	19299951	ATCCAGATGAGTGTCATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4174	FBgn0036793	FBtr0100567,FBtr0075111	3	2	3	256	3L	18594641	18594659	GACTCCTATGCCATGACTG		59	18594292	18594372	AAATAGTGACCAAGTCCCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG7271	FBgn0036791	FBtr0075101	3	1	1	95	3L	18581872	18581892	CAACTGAACCTTGTCATAGAC		58	18581946	18581967	GTCGAACATGATTGAGATATGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	star1	FBgn0036790	FBtr0089578	1	1	1	80	3L	18567824	18567907	GGTACTGACGGTGATAAGTG		59	18568006	18568024	GGATTCGAGTGAATCAGGG		59	NA	
Drosophila melanogaster	50	CG32182	FBgn0052182	FBtr0075188	3	1	1	60	3L	17751815	17751833	AGAGGTACCAGTATCCCAG		59	17751857	17751875	GCGGTAATCATACAAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sec3	FBgn0086475	FBtr0075231	1	1	1	82	3L	17415683	17415701	AGTGTTATAACGATGCGCT		59	17415541	17415639	GCCTTCGAAGAATTGATTCAG		59	NA	
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	1	8	8	118	3L	16956803	16956821	AAGACCCATTGAAGGTAGC		59	16956901	16956979	CAATAGACCCTTGTGAATCAC		58	NA	
Drosophila melanogaster	50	CG4729	FBgn0036623	FBtr0075417,FBtr0075419,FBtr0075418	3	3	4	82	3L	16377075	16377093	ATCAAGCCCATAGACAAGC		59	16376951	16377030	GACACGAAGATAAGTTGGGA		59	NA	
Drosophila melanogaster	50	CG33257	FBgn0053257	FBtr0075378	2	1	1	60	3L	16339813	16339831	GGAATGGCTATCACTACCG		59	16339855	16339873	TCAAAGTAACCACCTTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32147	FBgn0047178	FBtr0075647	2	1	1	60	3L	15136475	15136494	TGAAATCGCTCGATATGGAC		59	15136434	15136454	CTATCTACAGGAGGTACATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5114	FBgn0036460	FBtr0075624	3	1	1	90	3L	14977140	14977158	CAGGATATCCATCTGGGAC		58	14977210	14977320	CCATTTGATCCTTATGACAGC		59	NA	
Drosophila melanogaster	50	shd	FBgn0003388	FBtr0075675,FBtr0075676	1	2	2	90	3L	14613774	14613794	GAATATTCTGGAGCTCAAGGA		59	14613845	14613921	GTTGGCTAACGTTTCTATGC		59	NA	
Drosophila melanogaster	50	CG9592	FBgn0036426	FBtr0075717	1	1	1	60	3L	14511291	14511309	TCAAGATGATCCGACTTCC		58	14511332	14511351	ATATTCCTTACGGGTAGGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	toe	FBgn0036285	FBtr0075980	3	1	1	196	3L	12416969	12416987	AACATGAGCTCAAATCCCA		59	12416725	12416811	CCTTCGATATCTATCATCCGA		58	NA	
Drosophila melanogaster	50	CG32104	FBgn0052104	FBtr0075986	1	1	1	80	3L	12391118	12391136	TATTTACATGGCGAGGAGG		58	12390990	12391074	CTGTAAGACGGTGGATCTG		59	NA	
Drosophila melanogaster	50	RhoGAP68F	FBgn0036257	FBtr0075997	1	1	1	89	3L	12134437	12134455	GTTTGATGATACCGAGCTG		58	12134571	12134646	TCAAGTTCTGGATCTTCGG		58	NA	
Drosophila melanogaster	50	rols	FBgn0041096	FBtr0076054,FBtr0076055,FBtr0076057,FBtr0076056	3	4	5	195	3L	12021963	12048296	TAGATCTCCAGTCCATCCG		59	12020252	12021804	CCATCAACATCTTTCAGCG		59	NA	
Drosophila melanogaster	50	CG7351	FBgn0036184	FBtr0076102	2	1	1	60	3L	11620408	11620426	TTTCTCGATCTGGCTATGG		58	11620449	11620468	TGACAATCTCATCAAAGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32082	FBgn0052082	FBtr0076216,FBtr0113423,FBtr0113422	3	3	3	109	3L	11152568	11152586	AGTGGATACAGTACCAGCA		59	11152659	11152872	TCCTTAATTCGTTCCAGGC		59	NA	
Drosophila melanogaster	50	Mnf	FBgn0036134	FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228	2	5	5	143	3L	11109449	11109535	ACAATACACAGGATCTGTTCC		59	11109326	11109344	ACGAATAAATGCCCGAGAG		59	NA	
Drosophila melanogaster	50	CG8065	FBgn0036075	FBtr0076296	2	1	1	69	3L	10209611	10209631	AACTTCCATCTATATCGGAGC		59	10210143	10210162	ATTTCATCAGATCGGAACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpS9	FBgn0010408	FBtr0076423,FBtr0076424	1	2	3	162	3L	9504210	9504228	CTGGCTAAGATCCGTAAGG		59	9503662	9503680	CCTCAATCTTCAGACCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	orb2	FBgn0035938	FBtr0076563,FBtr0076561,FBtr0076564,FBtr0076562	3	4	4	60	3L	8936313	8936334	CGGAATTAAAGTATCCAAAGGG		59	8936274	8936292	ATGTAGCTCTGCTGATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	foi	FBgn0024236	FBtr0076624	1	1	1	98	3L	8525887	8525905	CATTGCCTTTGGACAATCG		59	8525966	8526051	ATCTCTGGCATCATATCGAC		59	NA	Nonspecific
Drosophila melanogaster	50	se	FBgn0086348	FBtr0076623	2	1	1	96	3L	8514299	8514319	GTGGAGAGGATTATAACTACG		57	8514434	8514452	ATGTAGAAGGCCATCACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	DNApol-alpha50	FBgn0011762	FBtr0076603	3	1	1	81	3L	8336219	8336295	CTATCGTATGGATCATCCGAG		59	8336335	8336356	AACGTATGTAGATATCGTCCTG		59	NA	
Drosophila melanogaster	50	nmo	FBgn0011817	FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758	1	6	6	141	3L	8040250	8040352	GTCTTCGATCCGGATAAGC		59	8040457	8040475	AATCAGCCGTATACTGACG		59	NA	
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076777,FBtr0076779,FBtr0076780	1	3	8	163	3L	7811314	7813096	AATCAAACGGCAAATCCAC		59	7811169	7811187	TTGTGTTACCTTGAGGTCG		59	NA	
Drosophila melanogaster	50	CG32369	FBgn0052369	FBtr0076783	2	1	2	97	3L	7774094	7774115	GAAGTTCTTCTTAAACTGAGCC		59	7773960	7774036	CTTAAGTAGTGGGCCTTGG		59	NA	
Drosophila melanogaster	50	CG8543	FBgn0035787	FBtr0076863	2	1	1	60	3L	7463067	7463085	CCAACAATGTCTACACTCC		57	7463025	7463043	GACTTGGTGATCACTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	unc-13-4A	FBgn0035756	FBtr0076887	2	1	1	80	3L	7262828	7262846	GTGGTCATTGAACTACTGC		58	7262643	7262786	GTTAAGAGTACGCTTATGCAC		59	NA	
Drosophila melanogaster	50	RpL18	FBgn0035753	FBtr0076892	3	1	1	117	3L	7234013	7234031	TCAACCACAAGTACGATCG		59	7233837	7233855	TTGAACTTCTTGTTGGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32392	FBgn0052392	FBtr0076948,FBtr0076947	1	2	2	263	3L	6750546	6750628	AACAGGAAGAATTCCTGGC		59	6750301	6750319	AGACGCTCTTCATAAGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	SP1173	FBgn0035710	FBtr0076960,FBtr0076959,FBtr0076958	2	3	4	88	3L	6685394	6685480	TAATAACCGGTCTTACAGCT		58	6685325	6685343	AGTAATGGTCCGGTATTCC		58	NA	
Drosophila melanogaster	50	CG8398	FBgn0035708	FBtr0076980,FBtr0076979,FBtr0076981,FBtr0076978	2	4	4	93	3L	6609616	6609634	AAGCACTTCATTCCCTACC		59	6609688	6609779	TGCAGTAGATTATCAGATCTGG		59	NA	
Drosophila melanogaster	50	CG18769	FBgn0042185	FBtr0076973,FBtr0076970,FBtr0076972,FBtr0076971	3	4	6	164	3L	6544995	6545013	CACCACCCATAGAAGTCTC		59	6555513	6583716	ACATAGATGTCTTCTCCCG		58	NA	
Drosophila melanogaster	50	CG32406	FBgn0052406	FBtr0077037	2	1	1	100	3L	6012866	6012884	ATAAGCCGCAAGACTAGTC		59	6012947	6013168	TCATTGCAATTGAGATTCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18418	FBgn0035568	FBtr0073366	3	1	1	60	3L	4689695	4689714	TGTTTACCAGATGGAGTTGG		59	4689654	4689675	CACCATAGATGGATAATTTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dyl	FBgn0066365	FBtr0073343	3	1	3	241	3L	4299005	4299026	GCTTAATGACGACCATAAAGTC		59	4298551	4298569	CAGGACTATGGCCATTAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Gad1	FBgn0004516	FBtr0073276,FBtr0073277,FBtr0073275	2	3	3	80	3L	4082635	4084743	ACTGACGGCATATGATCTC		58	4082573	4082592	ACATCGATTACCTTCAGCAG		59	NA	
Drosophila melanogaster	50	Faa	FBgn0016013	FBtr0073278	1	1	1	70	3L	4073174	4073192	AAGGGTTCAGAATTGGACC		59	4073062	4073080	AGCTTGATCTCAGACTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11526	FBgn0035437	FBtr0073083,FBtr0073084	3	2	2	105	3L	3322982	3323003	GATTACTTCAAGGCCAATTACG		59	3322831	3322916	ATATTAGAGCAGCGATGGC		59	NA	InUTR
Drosophila melanogaster	50	BtbVII	FBgn0012049	FBtr0073025,FBtr0073024	1	2	2	80	3L	3150144	3150225	GTACTTTCAGGCTTTGTTCAC		59	3150266	3150285	TTTAGGTCATCGTACTGCAC		59	NA	
Drosophila melanogaster	50	CG14955	FBgn0035399	FBtr0073123,FBtr0073122	1	2	2	80	3L	3111110	3111337	GACTACTATGTGGATCAATTGC		58	3111051	3111069	CCAGGACAAAGAATTAGGC		58	NA	
Drosophila melanogaster	50	Jafrac2	FBgn0040308	FBtr0072982,FBtr0072983	2	2	2	92	3L	3043306	3043327	CGTGGTTAATAAGGAGATTGTG		59	3043380	3043449	ACAAAGGTGAAGTCCAGTG		59	NA	
Drosophila melanogaster	50	Pxn	FBgn0011828	FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951	2	4	5	110	3L	2607769	2607787	GTCAAGAATGTGACCATCC		58	2604264	2607695	CAAATCCACGTTGTTTCTG		57	NA	
Drosophila melanogaster	50	ecd	FBgn0000543	FBtr0072903	3	1	1	60	3L	2263756	2263776	ATGATGGATAGCTACCAATCG		59	2263716	2263736	CGCTAAACAGATTGGATACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1275	FBgn0035321	FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906	1	4	4	62	3L	2253685	2253787	GTATGGCAACTCCATTCTG		58	2253641	2253659	AGCTTCAGAGTCTTCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13921	FBgn0035267	FBtr0072772	1	1	2	164	3L	1748010	1748030	GATTCTGGACGATAATCATCG		58	1748360	1748435	GTGACACGAAATAGCACTG		58	NA	
Drosophila melanogaster	50	Psa	FBgn0035226	FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697	2	6	6	114	3L	1520666	1520684	TGAGACCTTTGTGCTAGTG		59	1520761	1521150	CATAGTTACCAGATTGCCGA		59	NA	
Drosophila melanogaster	50	CG13912	FBgn0035186	FBtr0072625	2	1	1	70	3L	1190004	1190023	GATCACAGGTACTTGACCTC		59	1190056	1190074	GAATTCTGTCGAGAGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trio	FBgn0024277	FBtr0072648,FBtr0072646,FBtr0072645,FBtr0072649,FBtr0072644,FBtr0072647	3	6	6	80	3L	998876	998894	CCGAATACATAGTCAGTGC		57	998722	998832	AGTTACTCAGATCCAGACG		58	NA	
Drosophila melanogaster	50	E(bx)	FBgn0000541	FBtr0072522,FBtr0072521	3	2	3	136	3L	235006	235024	AAATGACGTTGAAGAGCTG		58	234496	234577	GTTTGAGATCCATTGGCTC		58	NA	
Drosophila melanogaster	50	thoc7	FBgn0035110	FBtr0072527	2	1	2	126	3L	212541	212620	ACGAAATCATAAAGCAGCG		58	212368	212452	TACATGATGGGATTGCTGTC		59	NA	
Drosophila melanogaster	50	snoRNA:U3:54Ab	FBgn0065047	FBtr0091605	1	1	1	64	2R	13033162	13033181	ACATACTTTCACACTAGCTG		57	13033206	13033226	CCGAATAGAACGATTCAACTC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33426	FBgn0053426	FBtr0086418	1	1	1	62	2R	15626794	15626812	AATACATCGGTTCTCGTCC		59	15626750	15626768	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2857	FBgn0035078	FBtr0072419	3	1	1	60	2R	20787609	20787627	TGGTAAGAACACAGATGGT		58	20787567	20787585	AAAGTGTTCATCTGACTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yki	FBgn0034970	FBtr0072183,FBtr0072184	2	2	3	156	2R	19953829	19954697	TAAAGCAGAATGAATCTGGG		57	19953609	19953627	TACCATTCCAAATCGTCAG		57	NA	
Drosophila melanogaster	50	Obp59a	FBgn0034766	FBtr0071869,FBtr0071870	1	2	2	74	2R	18590241	18590259	TGCTGATTTGTTTGAGCTG		58	18590297	18590315	CTTCACTTAGTCCCTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wdp	FBgn0034718	FBtr0071851	2	1	4	175	2R	18198686	18198705	GAATAATACGTACTCACGCA		57	18188505	18195724	GGCGTCTTATCTTCTATAAGAC		57	NA	InUTR
Drosophila melanogaster	50	dve	FBgn0020307	FBtr0071776,FBtr0071775	1	2	2	126	2R	18168265	18168283	CCAATATCGAGACCGACAG		59	18168373	18168504	ATTAATGAGCCTCTGGCTG		59	NA	
Drosophila melanogaster	50	synj	FBgn0034691	FBtr0071757,FBtr0071756	3	2	2	183	2R	17969982	17970000	GGTTTGAGGAGATCTTCCG		59	17970214	17970232	ACTAGCAGGACATCAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6393	FBgn0034685	FBtr0071752,FBtr0071751,FBtr0071750	2	3	4	81	2R	17956169	17956254	GATAATTGAATTCCCAGCAGTG		59	17956296	17956314	GAAGGGAAGGATGTACTGG		59	NA	
Drosophila melanogaster	50	rig	FBgn0050149	FBtr0086252	3	1	1	107	2R	16522537	16522555	CTTACAGAAGACTCTGCCA		58	16522389	16522466	CTTCAGATTGGTCAACTCG		58	NA	
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457	1	11	15	108	2R	15365201	15366256	TTCACTCTGGTCAAACCAG		59	15366328	15366346	TTGGAGAAGAAGCTCATGC		59	NA	
Drosophila melanogaster	50	CG7137	FBgn0034422	FBtr0086505	3	1	1	60	2R	15115660	15115678	CATCACGGATACTCCACTC		59	15115702	15115720	TAGTGAGAGGCAGTATACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5-HT1A	FBgn0004168	FBtr0086578,FBtr0086577	3	2	2	145	2R	14978951	14981552	GTCACCATAATTGGCAATGTC		59	14981659	14981677	TCGTATACAGCTCCTAGGG		59	NA	
Drosophila melanogaster	50	CG18536	FBgn0034322	FBtr0086758	1	1	1	101	2R	14182690	14182764	TGAGGAAACGATGGTTGAG		59	14182829	14182847	TCATAGAAGGGCTGTTTGG		59	NA	
Drosophila melanogaster	50	sbb	FBgn0010575	FBtr0086765	3	1	3	91	2R	14170893	14170911	CAACAGCAACTAATGGGTG		59	14170734	14170838	AGTACACCCGCTTTAAGTG		59	NA	
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	1	8	8	97	2R	14032395	14032483	AGGAAAGAATTCTGAGAAGC		57	14032543	14032561	CAATCATCGGATACAGACG		57	NA	
Drosophila melanogaster	50	Hsf	FBgn0001222	FBtr0110964,FBtr0086782,FBtr0110966,FBtr0110965	1	4	4	60	2R	14018484	14018503	CAATGACAGCATAAGCAGTG		59	14018380	14018401	CTGATAGGAAATCAGTTCAGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	HLH54F	FBgn0022740	FBtr0089547	1	1	1	67	2R	13645900	13645921	GGTGGAGGCAATTATAATTTCC		59	13647548	13647566	CTCTGGTGGAACTCAAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sema-1b	FBgn0016059	FBtr0086890,FBtr0086891	1	2	2	85	2R	13565383	13565401	TTTATAGGCAACTCGACGG		59	13564084	13565334	TTGTAGATGACGTCCTTGG		58	NA	
Drosophila melanogaster	50	RpL18A	FBgn0010409	FBtr0086947	1	1	1	67	2R	13434113	13434131	ATTAAGGTGGACTCGATCC		58	13434064	13434082	TTTGAATCGTGGAACTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k01209	FBgn0022029	FBtr0086914,FBtr0086912,FBtr0086913,FBtr0086915	1	4	4	92	2R	13312000	13312086	CGGTTAAGAAGGGACATCTC		59	13312140	13312159	GTAATTGCAATAGGAGGGCT		59	NA	
Drosophila melanogaster	50	Amy-p	FBgn0000079	FBtr0087004	1	1	1	99	2R	13007784	13007804	GTGAAACTGAACTTCCATCTG		59	13007705	13007723	TAGTTGGTGTCGAATTGGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	GstS1	FBgn0010226	FBtr0087005,FBtr0100258,FBtr0087006	2	3	3	121	2R	12981867	12981885	CATTCTACCTGGAGAAGCT		58	12981677	12981697	GACCATGTAGTTCATGTAGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15609	FBgn0034180	FBtr0114627,FBtr0114625	1	2	6	103	2R	12896440	12897016	CAATCATTGTGAGACCGAG		58	12896355	12896373	TATTTAGCTGCATCTGTCG		57	NA	
Drosophila melanogaster	50	CG5522	FBgn0034158	FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026	1	6	6	81	2R	12676157	12676301	CTACTACACTATAGCAGCCTC		58	12676344	12676362	ATCCAACTGCTTGATGGAG		59	NA	
Drosophila melanogaster	50	CG8445	FBgn0034088	FBtr0087246,FBtr0087245	1	2	2	210	2R	12083400	12083418	AAATATGAACGCTGCTGGA		59	12083149	12083226	CTGTACATCGTGACATCCA		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	scb	FBgn0003328	FBtr0087370,FBtr0087369	2	2	2	111	2R	11144952	11144970	ATCCAAACATCAGGAGACG		59	11145042	11145127	GAAGAAGCCAAACTTGTATAGC		59	NA	
Drosophila melanogaster	50	scb	FBgn0003328	FBtr0087370,FBtr0087369	1	2	2	80	2R	11144983	11145002	TGGATCATTATTGTGTCCGT		59	11145042	11145127	GAAGAAGCCAAACTTGTATAGC		59	NA	
Drosophila melanogaster	50	CG12854	FBgn0033965	FBtr0087467	3	1	1	62	2R	10657520	10657539	AGTGCTACAGAACCTATGTC		58	10657477	10657495	GATTCCAGTGGGAATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12869	FBgn0033943	FBtr0087496	3	1	1	165	2R	10480311	10480329	GATCCTGATTCACCTGTCG		59	10480526	10480545	AAATCGTAGTTCGTTGATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cp1	FBgn0013770	FBtr0087592,FBtr0087591,FBtr0087593	3	3	3	299	2R	9854396	9854414	ATAAGTACGCCGATTTGCT		59	9854737	9854755	AATCGACCAGATTCTGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6209	FBgn0033862	FBtr0087651	2	1	1	60	2R	9550078	9550098	CAAGGAAATAAAGGGCAAGTG		59	9550038	9550057	CTCTTTCTTCTTGCGTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tafazzin	FBgn0026619	FBtr0087864,FBtr0087862,FBtr0087863	3	3	3	183	2R	8641315	8641407	TCTTCATGTTTGGCAAGTG		58	8641150	8641168	GACTCGTAGATGATCCTGC		59	NA	
Drosophila melanogaster	50	nemy	FBgn0033765	FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875	2	6	6	194	2R	8558847	8559072	AAGCGGATGAGGAAATCTG		59	8558671	8558690	CTCTGTACGCTTATAGTCCC		59	NA	InUTR
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835	2	6	8	109	2R	8504609	8504628	CTGCATATTTACCCACTGAG		58	8504697	8505312	GACGTCTACCATTCTAAATCTG		58	NA	
Drosophila melanogaster	50	CG12943	FBgn0033572	FBtr0113065	3	1	2	114	2R	6792368	6792558	CCACAGGATGAAATTTATCCTC		58	6792631	6792651	GAACTACGTACTCAATTAGCG		58	NA	
Drosophila melanogaster	50	CG12936	FBgn0033549	FBtr0088222	1	1	1	60	2R	6699392	6699410	ATCGATCATTTCTCCAGCG		59	6699434	6699452	GCTTGATCTTCAAATCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7220	FBgn0033544	FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217	3	5	5	110	2R	6624695	6624713	CCATGTTGAGTAGTTGTCG		58	6624787	6624870	CAGAATCATCGTGGTACCA		59	NA	
Drosophila melanogaster	50	Hr46	FBgn0000448	FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367	3	4	4	111	2R	6095624	6095704	CAATTTCCGCGATATTTCC		57	6095531	6095549	CGAATCTATCGAGAACAGC		57	NA	
Drosophila melanogaster	50	CG1371	FBgn0033482	FBtr0088428	1	1	1	110	2R	5960613	5960693	GGGCACTGATGAAATACAC		58	5960521	5960539	TACCATACTTCTTCACGCA		58	NA	
Drosophila melanogaster	50	Pka-R2	FBgn0022382	FBtr0112901	2	1	5	92	2R	5884716	5885217	AGCTAGCATTCCTAGACAC		58	5884642	5884661	ACATTTGCTCATAGATCACG		58	NA	
Drosophila melanogaster	50	CG12134	FBgn0033471	FBtr0088388,FBtr0088389	1	2	2	60	2R	5859732	5859750	GAAACGTCTACGACAAGGA		59	5859774	5859792	TAGCTCTTGAAATCGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Not1	FBgn0085436	FBtr0112674,FBtr0112672	3	2	3	111	2R	5457800	5457819	GAAACTTTAACTCGAGCAGC		59	5457651	5457726	GTATCGCATGACCTTACGT		59	NA	
Drosophila melanogaster	50	CG8029	FBgn0033393	FBtr0088587,FBtr0088588	1	2	2	133	2R	5095480	5095498	TTGCTGGAAGATCACATGG		59	5095661	5095679	CTGGTGTAGTAGGTCTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	babo	FBgn0011300	FBtr0088659	2	1	2	82	2R	4842342	4843221	CATCTTCAGCTACAGTTGC		58	4843267	4843285	ACCTTTCGTTACTGGTGAG		59	NA	
Drosophila melanogaster	50	Tom7	FBgn0033357	FBtr0088657	2	1	1	90	2R	4839305	4839323	TATCCGAGGGAGTTAAGGA		58	4839377	4839395	AAATACAGCACAAGAGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8272	FBgn0033337	FBtr0088686	3	1	1	72	2R	4777366	4777384	TCTTTAGAGCACTGCAGTG		59	4777249	4777267	GACTCATTTCCAGCTTGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	rgr	FBgn0033310	FBtr0088692	1	1	1	80	2R	4496832	4496851	GGTACTTTGAGAGGATGGAC		59	4496893	4496972	TCTCATTGGAAATCTTGGCT		59	NA	
Drosophila melanogaster	50	Cyp6a14	FBgn0033302	FBtr0088734,FBtr0088735	3	2	2	60	2R	4452185	4452206	CAACTCAGATATTGTGCTAGAC		58	4452146	4452164	GTGGATATTATGCACCGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11191	FBgn0033249	FBtr0088868	2	1	1	230	2R	3889123	3889141	GATGTGAACAGCAACTGTC		59	3888911	3888929	ATTCGCCTTGTATTTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rnh1	FBgn0023171	FBtr0088883,FBtr0088884	2	2	2	110	2R	3819056	3819130	CAAGAATCACCAGCTAAACG		59	3818965	3818983	ATTCCCAAGTCAAGAGCTG		59	NA	
Drosophila melanogaster	50	CG12822	FBgn0033229	FBtr0088842	1	1	2	104	2R	3720673	3720745	TTGACTCAGGAAGAACCTC		58	3720813	3720831	CTCCATACAGTTCCAGGTC		59	NA	Nonspecific
Drosophila melanogaster	50	Gapdh1	FBgn0001091	FBtr0100479,FBtr0088903	2	2	2	61	2R	3679690	3679708	GCTAATCTCGTGGTACGAC		59	3679647	3679665	ACTTGATCAGGTCGATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088988,FBtr0088989,FBtr0088990	2	3	9	91	2R	3362872	3362953	CAATAAATGCAGGAGATCGG		58	3361302	3361320	TTGTGATGTGAAGATCCCA		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111087,FBtr0111059,FBtr0111074	2	3	60	94	2R	3244597	3249236	ATTGGTCATCACAGAACCT		58	3244521	3244539	TTAAGGCTTGACCCATAGG		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111055	1	1	60	96	2R	3236476	3239434	GTGCCCATCATTAGATGGT		59	3236398	3236416	TGAGAGTACCAGAGACCTG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111094	3	1	60	97	2R	3243476	3243494	AACGATGAGTTCAGTCACG		59	3236472	3243417	TTGTACCATCTATAAACGGGC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111066	2	1	60	109	2R	3225833	3225851	ATAGATTCCGTTCATGCGG		59	3219873	3225761	CATCTGGGAGGTACATTGAC		59	NA	
Drosophila melanogaster	50	CG7849	FBgn0033060	FBtr0085977,FBtr0085976	2	2	2	60	2R	1965401	1965419	GATGTGACAGATAGTCTGC		57	1965441	1965461	GGAGGTTCTTGATAATTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17490	FBgn0040009	FBtr0111256,FBtr0111258	1	2	4	177	2L	22433048	22440282	ACAATAATGAGAAGGTGGGA		58	22440422	22440440	CTCATATAGTCAGCGGGTG		59	NA	InUTR
Drosophila melanogaster	50	nrv3	FBgn0032946	FBtr0081520,FBtr0081518,FBtr0081521,FBtr0081519	3	4	4	91	2L	21385319	21385337	AGCACATTAGTTTGGTACG		57	21385391	21388515	AGATCTTGGTACGATTTCAG		57	NA	
Drosophila melanogaster	50	Hr39	FBgn0010229	FBtr0081481,FBtr0081480,FBtr0081479,FBtr0081478	1	4	4	104	2L	21255223	21255241	TAGTTTGGCAGGAACTTCG		59	21255309	21255551	ACATCCATGATTTCCTGCA		59	NA	
Drosophila melanogaster	50	phr6-4	FBgn0016054	FBtr0081404	1	1	2	146	2L	20645747	20645765	ACAGCTGTTTACACTCGAC		59	20645347	20645420	GATTTCAAACGGTACCTGC		59	NA	InUTR
Drosophila melanogaster	50	tj	FBgn0000964	FBtr0081239	1	1	1	129	2L	19465154	19465172	TCTGGTGAACACATCTTCG		59	19465265	19465283	ATAGTGGTGTGCGTAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Side	FBgn0032741	FBtr0081141	3	1	1	219	2L	19028914	19028932	AAACCACTCATGGAGAAGC		59	19029301	19029321	CAGCTCTGTATTTGTTAACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17322	FBgn0027070	FBtr0081107,FBtr0081105,FBtr0081108,FBtr0081106	1	4	4	100	2L	18827245	18827516	ACTATTAGCTTAGAGGACTTCG		58	18827577	18827595	GTGGTATTGCAGTCCTCTC		59	NA	
Drosophila melanogaster	50	Mst36Fa	FBgn0086681	FBtr0081074	1	1	1	61	2L	18676025	18676043	CTCATCGGCAATGATAGTG		58	18675931	18675949	GATATCGCGTTTCAATCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	fws	FBgn0024689	FBtr0080999	1	1	2	82	2L	17480301	17480319	AACCAAGTGGTTAATGCCT		59	17480184	17480202	ATAAAGGTGGCCAATAGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0080978,FBtr0080975,FBtr0080977,FBtr0080976	1	4	6	84	2L	17408757	17408775	GAGGTTCTGAGCCTAAAGG		59	17408823	17408908	TTTCGATGTCCAGTGACTC		59	NA	
Drosophila melanogaster	50	CG31738	FBgn0051738	FBtr0080882,FBtr0080881	1	2	2	123	2L	16657881	16657899	ATTATCGGGATGAACGCAG		59	16658057	16658075	TTGTGACCATTCAGTTCGT		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	c(2)M	FBgn0028525	FBtr0080830	1	1	1	80	2L	16303992	16304011	AGAAGATGCTATCCGAATGC		59	16304052	16304131	GTTCAATAGACTCGTTCAGGT		59	NA	
Drosophila melanogaster	50	CG13244	FBgn0032577	FBtr0080792	1	1	1	60	2L	15917295	15917313	TTCTACAACTTTGTCTGCC		57	15917337	15917355	CTACTTGTTCAGCATCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycE	FBgn0010382	FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775	1	5	5	96	2L	15729492	15729576	ACATTTAGTCGGGAGATGG		58	15729414	15729432	AGATCACTCGGAAGAATGG		58	NA	
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0100611,FBtr0080709,FBtr0100610	1	3	7	80	2L	15258932	15261730	TCAAGTGGAAATTAACGGAC		58	15258871	15258892	CTAATCTGGTTATCTCGATCCT		58	NA	
Drosophila melanogaster	50	Adh	FBgn0000055	FBtr0100594,FBtr0100591,FBtr0100589	2	3	5	100	2L	14616350	14616368	TTTGACCAACAAGAACGTG		58	14616432	14616515	GGATCACCAGGTTCTTCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG33648	FBgn0053648	FBtr0091625	2	1	1	60	2L	14525152	14525171	CCAGACTGTTAATATTGCCC		58	14525253	14525274	CCATTATATCGCTTGTATAGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7968	FBgn0028532	FBtr0080551	2	1	1	60	2L	13849582	13849602	CTACAAGGAAATTGGCATCAG		59	13849687	13849705	CAGATCGGTGAAGTTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7099	FBgn0032517	FBtr0080499	1	1	1	139	2L	13389114	13389206	ATGAGCCGAATATTACCGA		58	13389309	13389327	TTTCTGGCGGTTAATTTGG		58	NA	
Drosophila melanogaster	50	CG6108	FBgn0032498	FBtr0080459	1	1	1	60	2L	13279487	13279508	ATACAACTCAGAACCTTCTCAG		59	13279528	13279547	GTTATCCTCATCCTGTTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6043	FBgn0032497	FBtr0113039	2	1	5	80	2L	13274311	13274331	AGCGTATCATACCGATAACTC		59	13274372	13274705	GGTAATTCTGGTAACCACCA		59	NA	
Drosophila melanogaster	50	CG16972	FBgn0032481	FBtr0080488	1	1	1	157	2L	13198536	13198613	CCTGACTAGCGAGAAAGAG		59	13198397	13198418	CGCAGAAGTAATACACATTCAC		59	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090013,FBtr0090027	1	3	17	90	2L	12731059	12737970	TCTTTATGGTTCTGGCTACC		59	12738023	12738041	AAGTAGTACAGGAAGGCGA		59	NA	
Drosophila melanogaster	50	CG5446	FBgn0032429	FBtr0080388	3	1	1	93	2L	12427509	12427528	CAGAACTACTCCCTGAACAG		59	12427354	12427372	ACTTGTCCTGAACGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31759	FBgn0051759	FBtr0080349,FBtr0080348	2	2	2	60	2L	12208525	12208545	CTGCAGGTATTAGATACGGTC		59	12208567	12208585	TTAGGGATGAAATCCACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6509	FBgn0032363	FBtr0080246,FBtr0080247	3	2	2	80	2L	11511223	11511241	CGGTGTATGATGAGGAACC		59	11510833	11511182	GAGTCACATACCTTAGAGTCTC		59	NA	
Drosophila melanogaster	50	CG33129	FBgn0053129	FBtr0080169	2	1	4	108	2L	10968579	10968708	GCTTCTGAAAGCTATAAACGAC		59	10968492	10968511	CAGTTCTTCGTTCAGATTCG		58	NA	
Drosophila melanogaster	50	CG14071	FBgn0032312	FBtr0080178	1	1	1	60	2L	10888607	10888627	ACGATACCGAGGATAATTTGG		59	10888567	10888586	CTCAAATTGCACTGGAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6508	FBgn0032303	FBtr0080139	3	1	1	60	2L	10820325	10820344	GAAAGAACCATCTAGCTACG		57	10820366	10820385	GAATCTGGAGTATTCATCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5168	FBgn0032246	FBtr0080020	2	1	1	277	2L	10424070	10424088	AACTTTGAGACACCATGCA		59	10424661	10424742	ACTTTGTTGCTATGTCCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CYLD	FBgn0032210	FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069	1	5	5	80	2L	10296852	10296949	CCGTTTCTAAAGCTAAGCTC		58	10296791	10296812	CGGTAATGTTAACTTCTCATCC		58	NA	
Drosophila melanogaster	50	CG34159	FBgn0085188	FBtr0112350	1	1	1	80	2L	10203021	10203391	GGATCAAGGTCTACGAACAG		59	10202960	10202981	CGAATGGCTTAAAGTTCTTCAG		59	NA	
Drosophila melanogaster	50	CG17005	FBgn0032109	FBtr0079798	2	1	1	103	2L	9328260	9328280	GAGATCCTGTCTATCAATCCT		58	9328345	9328421	TCTTCAGTGTGAACTTCGT		58	NA	
Drosophila melanogaster	50	CG13090	FBgn0032054	FBtr0079683	2	1	1	66	2L	8518714	8518732	TACCAACAGAAGATCCAGG		58	8518762	8518780	TCTCGAATTCTGCAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fy	FBgn0001084	FBtr0079712	1	1	1	83	2L	8401853	8401871	TTCTTGTTGTTTGTGGCAG		59	8401729	8401750	CTTCTCCTGGAGTATATTAGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31898	FBgn0051898	FBtr0079662	1	1	1	60	2L	8400996	8401017	GGAAATCGTTAAGTCAAAGCTC		59	8401038	8401056	CTATCCTCGGTCAATCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13394	FBgn0032037	FBtr0079717	2	1	2	183	2L	8389265	8390108	TACTTAGCTCCCAATATGCG		59	8389101	8389119	GAACTCCTTCCTCGAATGG		59	NA	
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567	3	8	9	166	2L	8089724	8105699	GCTCAATCACTTGATAAGCTG		59	8106857	8106875	GAAGGTACATCCGTCACAG		59	NA	
Drosophila melanogaster	50	MED20	FBgn0013531	FBtr0079544	3	1	1	60	2L	8072130	8072148	ACACCGTGAAACAATACCT		59	8072088	8072106	CCCATAAGAGTCACATGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Proct	FBgn0045038	FBtr0079562	1	1	1	185	2L	7870281	7870299	GATTTGGACAAGTTGCGTG		59	7865997	7866015	ATTAGAGTTGCCGTTGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7164	FBgn0031946	FBtr0079487	1	1	1	60	2L	7781759	7781777	TAAGATCGAGTCAGTTGCC		59	7781801	7781819	TTGTCGTAGGTCTTTCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7179	FBgn0020880	FBtr0079497	1	1	1	60	2L	7777027	7777045	CCGATCAATATCAGACCAC		57	7776985	7777003	GCATCGTAATCCTTGAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myo28B1	FBgn0040299	FBtr0079475,FBtr0079473	1	2	4	80	2L	7687916	7687984	CCATTGGACTCCGATAAGG		59	7688027	7688046	CTTAACAACAGCTTTGAGCA		58	NA	
Drosophila melanogaster	50	CG5171	FBgn0031907	FBtr0079440,FBtr0079439,FBtr0114588	3	3	3	123	2L	7404096	7404115	ATAATTGGTCGCAGAAAGTG		58	7404267	7404285	GTTTGAATCTGGGCATCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9044	FBgn0031752	FBtr0079149	3	1	1	110	2L	5951984	5952060	ACGTTAACTGAAAGGACGA		58	5952134	5952152	TTTATCCTTGCGCATTGTG		59	NA	
Drosophila melanogaster	50	CG9021	FBgn0031747	FBtr0079154	2	1	1	63	2L	5903958	5903978	GACTTAAATTGGATCCCACCT		59	5903915	5903933	GAAATGTGTAGGTCGAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3756	FBgn0031657	FBtr0078994	3	1	1	67	2L	4969834	4969852	CATGATTAAGCTGAACCGC		59	4969883	4969901	CTGGTGAGAAACAGTTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cf2	FBgn0000286	FBtr0089647,FBtr0089648	2	2	3	72	2L	4879192	4880391	TCGCATACATACAGGAGAG		58	4879138	4879156	CAGATAGTCCTTCACGCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Cf2	FBgn0000286	FBtr0089647,FBtr0089648	1	2	3	81	2L	4879192	4880392	CTCGCATACATACAGGAGAG		59	4879130	4879148	TGCTTGGTCAGATAGTCCT		59	NA	Nonspecific
Drosophila melanogaster	50	CG3355	FBgn0031619	FBtr0077376,FBtr0100560	2	2	2	60	2L	4651845	4651864	GTAAAGGGTCGTCATTATCC		57	4651885	4651905	CATAGCGATCATTGATTAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31961	FBgn0051961	FBtr0077484,FBtr0077485	1	2	2	60	2L	4187335	4187355	CGTTGACTACTTCTACCAGAC		59	4187295	4187316	CTTTAATCGCTGCTCTATATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3980	FBgn0031575	FBtr0077504,FBtr0077503	1	2	2	101	2L	3869048	3869122	ATCAACAGTTTGGATGGCT		59	3869185	3869205	AAGACTCTCAATAGGATCGAC		58	NA	
Drosophila melanogaster	50	CG15406	FBgn0031517	FBtr0077580	3	1	1	110	2L	3310196	3310633	CGACAATAGCATTCGAGGT		59	3310707	3310725	CAGGGTATCACGTGATAGG		58	NA	
Drosophila melanogaster	50	CG17259	FBgn0031497	FBtr0077667	1	1	1	62	2L	3036055	3036073	TATCGCGTTGTTAACATCG		58	3036011	3036029	GAGATCCAGCTTCTTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34447	FBgn0085476	FBtr0112751	2	1	1	103	2L	2419491	2419561	CTGTACTCGAATTCCACCC		59	2419406	2419427	CCATGGATGAGTATCTTTAGGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	VGlut	FBgn0031424	FBtr0077769	1	1	1	178	2L	2407361	2407474	AAGGAAACCTCATTCGGTG		59	2407616	2407634	CCAGGATTGGTAACATCCC		59	NA	
Drosophila melanogaster	50	Rab5	FBgn0014010	FBtr0077793,FBtr0077798,FBtr0077796,FBtr0077794,FBtr0077797,FBtr0077795	3	6	6	203	2L	2360797	2360985	AACTGCATAAACAAGCCTC		58	2360549	2360569	CGTTCTTAGGTAGTTTCTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10880	FBgn0031398	FBtr0077843	3	1	1	73	2L	2215945	2215963	TGGACAAACTTATTGCCGA		59	2215890	2215909	GAAGAGTTCCAAATCTTCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(dx)	FBgn0003557	FBtr0077824,FBtr0077823,FBtr0077822	3	3	3	83	2L	2040140	2040221	AATTAAGCGTGACAATCGAG		58	2040267	2040285	TGTCAATCAAGAGCTCCAC		59	NA	
Drosophila melanogaster	50	CG4896	FBgn0031319	FBtr0077968,FBtr0114467,FBtr0077970	1	3	3	80	2L	1181782	1181861	TGAGGGTCTATCCTATCGT		58	1181905	1181923	CTCCTATTTGGTGGAGGAG		58	NA	
Drosophila melanogaster	50	PNUTS	FBgn0053526	FBtr0091486,FBtr0091489,FBtr0091487,FBtr0091488	1	4	4	81	2L	872013	872033	CAATCGCCTCAAGATAAACTC		59	872076	872221	TAGAATGCGTACACCTTCG		59	NA	
Drosophila melanogaster	50	lectin-21Ca	FBgn0040107	FBtr0077998	1	1	1	60	2L	624973	624991	TCACTTAGCAAGTCTGGAG		58	625015	625033	CACGGATAGATTTAGGGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11835	FBgn0031264	FBtr0078076	2	1	1	60	2L	562207	562225	AACCAAAGAGTCCAAGGTG		59	562165	562183	AGTGTTCTGATCCAATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3345	FBgn0031240	FBtr0078127	3	1	1	109	2L	270510	270528	TTTAAACGACGATCTCAGC		57	270600	270673	TCTGATAAGCTTTGTAGTGC		57	NA	
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100309	3	1	8	152	2L	119259	119277	ATTACTGAATTGCGTTCCC		58	119068	119144	TTCGTCAATCACTTCTAGCT		58	NA	InUTR
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089431,FBtr0089436,FBtr0089435	2	3	10	116	2L	111013	111031	TGGAAGACACTTAACCTGC		59	111110	112701	AAACATGATACCCTGGTCAC		59	NA	
Drosophila melanogaster	50	CG17168	FBgn0039943	FBtr0113730	1	1	1	60	XHet	61760	61778	GAAGATTAAGCAAAGGGCG		59	61801	61820	GCTTTCATTGGAGGAATCTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR34311	FBgn0085340	FBtr0112509	2	1	1	67	X	20254718	20254795	GGAATACTGAACTCAAAGAAGC		59	20254672	20254690	GGTATCGCAGTTAGATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14618	FBgn0031189	FBtr0077351	3	1	1	130	X	21876259	21876277	ACCACAATCACTTCAAGGG		59	21876371	21876480	CTCAAACACATGGTAGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14613	FBgn0031188	FBtr0077367	2	1	1	180	X	21873120	21873199	CTACCTGTCAAAGAGTGGC		59	21872795	21872814	AATGGATACGGTTGTACACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33502	FBgn0053502	FBtr0070055	2	1	1	102	X	21482189	21482207	GGAGAGCTTGAAGTTCCTG		59	21481054	21482123	CAATTTGGCCAAAGGACTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32551	FBgn0052551	FBtr0074564	3	1	1	106	X	18333120	18333138	AAATATAACCCAAGCCTGG		57	18333208	18333849	TTTCATTGGGTGAATCGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089658,FBtr0089660,FBtr0089657,FBtr0089661,FBtr0089659,FBtr0089662,FBtr0089663	1	7	7	82	X	17844790	17845235	CTAACTGTCAGGTTCCTCG		59	17844726	17844744	ATGATGGCGATTATGTCGA		58	NA	
Drosophila melanogaster	50	Arpc3B	FBgn0065032	FBtr0113478,FBtr0074410	2	2	2	60	X	16999552	16999571	ATGAGTCACTCTACTTCTGG		58	16999015	16999531	TCCGACTTAACTTCGTAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9519	FBgn0030589	FBtr0073984	3	1	1	60	X	14750257	14750276	TCAATGGTGATTAGCCAGAC		59	14750216	14750236	GATAGATCTCGAGCATATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33174	FBgn0053174	FBtr0073826,FBtr0073825	3	2	2	81	X	13696194	13696278	TCTCAAGAGCTTGGTTATCC		59	13696322	13696340	TGCAGTGGTGTAGTAATGC		59	NA	
Drosophila melanogaster	50	lic	FBgn0015763	FBtr0073720	1	1	1	101	X	12985990	12986008	GGTCTTCCTTCACGATCTG		59	12986159	12986177	ATGACTTTCAGTTGAGCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1537	FBgn0030260	FBtr0073394	1	1	1	157	X	10956478	10956710	CGTAACATTAACCATTGCTG		57	10956278	10956296	TAGATGAACTCGCAAGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	spirit	FBgn0030051	FBtr0071231,FBtr0071230	2	2	2	86	X	8466541	8466559	GAGGTTCGACCACTATGTG		59	8466322	8466340	TTGTTCAGTTCATTGCAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12796	FBgn0029909	FBtr0070973	3	1	1	80	X	6726265	6726284	CATGTTGACTCTGATCTCGA		59	6726134	6726226	CGGGTCATGTATCTTCTATAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lin-52	FBgn0029800	FBtr0070840	1	1	1	106	X	5648377	5648477	GATTAATGAACTAGCCCAGCT		59	5648291	5648309	GAGTCATCTCCATTGCCTC		59	NA	
Drosophila melanogaster	50	CG2930	FBgn0028491	FBtr0070608,FBtr0070609,FBtr0070610	2	3	3	299	X	3769989	3770007	AAATAGCTCCTGCAAGTCC		59	3770270	3770360	GGTAGGGCAGTTTCTTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3021	FBgn0040337	FBtr0070173	3	1	1	164	X	921579	921686	GTACATCACTTCCAAACGTG		59	921813	921831	TAGATGGTATTGCTTGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41041	FBgn0069966	FBtr0114295	3	1	1	105	U	403738	403756	AGAAGGCGATTAGAGACAG		58	403146	403670	CTAGATCTCCAAAGGGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131	3	5	5	84	4	372565	372585	CGATATACCACAACATGTTGG		59	372445	372522	GTGTCCAGCCATTATATTTGAG		59	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	2	14	14	109	3R	27690344	27690863	AAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	CG31002	FBgn0051002	FBtr0085813	3	1	1	60	3R	27220669	27220749	TAATGAGGTCCTTAGGATTGC		59	27220629	27220650	GATGAAATCACTACTTTGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15554	FBgn0039820	FBtr0085736	2	1	1	88	3R	26951977	26952381	TGGCTGTTAACCCTAATGG		59	26952433	26952451	CCGTAGACATAGGCTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15550	FBgn0039811	FBtr0085751	2	1	1	60	3R	26762705	26762723	CACTGGAATCCATACCCAC		59	26762663	26762683	ATACAAGTGATCAGGACTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pka-C2	FBgn0000274	FBtr0085727	2	1	1	80	3R	26521699	26521717	GCCCTCATACTTTACGTCC		59	26521575	26521657	GAGTTTCCTAAACGCTTTGAG		59	NA	
Drosophila melanogaster	50	sima	FBgn0015542	FBtr0114597,FBtr0085565	1	2	2	86	3R	25893709	25893727	CATTGAGATTCCGTTGGGA		59	25893777	25894044	TCATGCATCTTGTCATCCA		58	NA	
Drosophila melanogaster	50	CG4582	FBgn0039344	FBtr0084896	1	1	1	64	3R	21407984	21408201	CAATCCCACCAGAATCCTC		59	21407938	21407956	GCTCGTTGTACATGTTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13643	FBgn0040601	FBtr0084722	2	1	1	104	3R	20725656	20725674	CACATCCACTACATCGACC		59	20725509	20725589	TCGTCTAAATCTTGCTTCGA		59	NA	
Drosophila melanogaster	50	CG13826	FBgn0040590	FBtr0084391	1	1	1	60	3R	19048541	19048560	AAGACCAACATTTGGAAAGG		58	19048500	19048521	GAAGCCTTTCAATACTTACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13837	FBgn0039042	FBtr0084345	2	1	1	60	3R	18870115	18870133	CTCCTGCTCATCTAGTGTC		58	18870156	18870175	TGGCAGTTGATGATATTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-50	FBgn0024832	FBtr0084252	3	1	2	84	3R	18288485	18288571	GCTTCTTCCACATCAAGAG		58	18288619	18288637	AGGAACTCAAACACCATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31207	FBgn0051207	FBtr0084044	3	1	1	62	3R	16872082	16872103	GCTACTTGAAGATATACGAGCT		59	16871977	16872059	CTAGCCAGAATACCCATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sep2	FBgn0014029	FBtr0083945	3	1	1	135	3R	16413958	16413976	TTTCGTCGACAAGAAGGAG		59	16413175	16413859	TTCGCCTATACACATGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TFAM	FBgn0038805	FBtr0083949,FBtr0083948	3	2	2	80	3R	16401331	16401873	CTACAGGAAAGCGATTTCC		58	16401269	16401287	ATAAGATTTCCGTGACGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5180	FBgn0043457	FBtr0083903	3	1	1	61	3R	16384864	16384883	GAAGGTCTTAGAGATCACCT		57	16384907	16384989	TGACCGCTTGTTGTATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr92A	FBgn0038714	FBtr0083811	2	1	1	241	3R	15424200	15424552	TGAAGATTTCCCTGCTGAG		59	15423977	15423995	CAGGTCACCAGTATAACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ahcy89E	FBgn0015011	FBtr0083378,FBtr0083379	2	2	2	124	3R	12804736	12804817	ATTGATGTGAATGGCTTGC		59	12804630	12804648	AAATTCACCAGTCTTCCCT		58	NA	
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083352	2	1	6	88	3R	12484779	12558421	AAGTACAAATGGTCTGCGA		59	12484709	12484727	AATGATTCGTGTGGAACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6901	FBgn0038414	FBtr0083269	2	1	1	81	3R	12149496	12149514	CTGTTGGTTTGTAGGTGTC		58	12149558	12149650	AACATAGTAGACCAGCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	pxb	FBgn0053207	FBtr0083162	1	1	2	60	3R	11510996	11511014	CCATCATCACTATCAGCAG		57	11512326	11512347	GGGATAGTGAATACTCTTTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	Trax	FBgn0038327	FBtr0083093	1	1	2	60	3R	11188249	11188318	TTCTACAGCGGTTACATCAG		59	11188339	11188359	TGATCTTACGCCATAGTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	foxo	FBgn0038197	FBtr0082887,FBtr0082886	1	2	3	83	3R	9892800	9892818	ATTTACGAGTGGATGGTCC		59	9892865	9905076	TATGGAGTTCTTCCATCCG		58	NA	
Drosophila melanogaster	50	rdx	FBgn0086364	FBtr0082872,FBtr0082871,FBtr0082874,FBtr0100852,FBtr0100361	1	5	5	90	3R	9796061	9796079	AAATCAGAAGTCAGAGCCA		58	9795916	9796007	AACGATAAGCTCTTTGGGA		58	NA	
Drosophila melanogaster	50	CG34307	FBgn0085336	FBtr0112503	3	1	1	72	3R	7723562	7723580	GCTCTCATAGTGATTCGCT		59	7723616	7723693	GAATTGGGTATATGGCCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pros	FBgn0004595	FBtr0089720,FBtr0089719,FBtr0089718	1	3	3	83	3R	7203837	7203855	CAAGATGTACTTCCCGGAC		59	7203900	7217259	TAGAATTCTCGGAAGTTCGAG		59	NA	
Drosophila melanogaster	50	HP1e	FBgn0037675	FBtr0082016	1	1	1	60	3R	5147703	5147723	CGATGAAGATAATACCTGGGA		58	5147744	5147763	CGAATCAATAAGTGAATGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Alh	FBgn0037471	FBtr0113199,FBtr0081615	1	2	6	130	3R	2921228	2921310	GAAGATGATCTCAGCAGCA		59	2921116	2921134	TTGTCGTTCTTATGCAACG		58	NA	Nonspecific
Drosophila melanogaster	50	CG12147	FBgn0037325	FBtr0078793	3	1	1	60	3R	1252765	1252786	AAATCATCCTCATGAGAAGGAC		59	1252726	1252744	GGATTGCTTCTCCTCTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mms19	FBgn0037301	FBtr0078778	1	1	1	126	3R	1060945	1061030	CGATGTTGTTGGTGATCTC		58	1061118	1061138	GTAGAGGAATTTAACGACAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14646	FBgn0037241	FBtr0078919	3	1	1	70	3R	216766	216836	CTTAGCGTAGCTAAGGCAG		59	216869	216888	CTTATCATCTGCAAGGTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9795	FBgn0037234	FBtr0078907,FBtr0100617,FBtr0078906,FBtr0078905	3	4	4	86	3R	150514	150598	GAGATATAGACGATCTAAAGACCC		59	150643	150661	CGGATTCCAGATGTGAGAG		59	NA	
Drosophila melanogaster	50	CG40397	FBgn0058397	FBtr0111151	2	1	1	84	3L	23855352	23855370	TGAAGAAATGGAACGAGCT		59	23855286	23855304	TTTGTATGCCTGACTACCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17698	FBgn0040056	FBtr0111168,FBtr0111167,FBtr0111166	1	3	3	80	3L	23741093	23741114	CAATAAGTAATGGATCAACGGC		59	23741153	23741252	CACAATATTCGTTCTGTCCAG		59	NA	
Drosophila melanogaster	50	CG33766	FBgn0053766	FBtr0091767	3	1	1	69	3L	22638774	22638865	AATCGTGCCAATACCTACG		59	22638897	22638916	ATAGCTGCGATTAAAGTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32440	FBgn0052440	FBtr0078345	2	1	1	70	3L	21353622	21354058	GGACACCAACGTCTATCAG		59	21354092	21354110	CAAAGTACAGGACTGACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr77a	FBgn0045474	FBtr0078281	2	1	1	79	3L	20730863	20731347	ACACTATGCACTTCTACGG		59	20730802	20730820	CAGCTTAAACAGTCCACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7757	FBgn0036915	FBtr0074891,FBtr0074892	1	2	2	60	3L	19904574	19904594	GCCATAACCAACCTTATAGAG		57	19904616	19904688	GTTTCAAGGGCTCATTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14353	FBgn0036771	FBtr0075144	1	1	1	111	3L	17901523	17901541	AGTCCGTAGAGAAGAAGGT		59	17901616	17901690	ATATCCAGAACTTGCAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0112850,FBtr0075441	1	2	6	229	3L	16069528	16069546	AGACCAAATCACTGTCAGC		59	16069739	16070090	ACTGCCACTTTCATATCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	Toll-6	FBgn0036494	FBtr0075614	2	1	1	60	3L	15331908	15331929	GAACATGATTACCGTTATGGAG		58	15331949	15331968	GAGACCATAGAGATTTCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10140	FBgn0036363	FBtr0075853	3	1	1	89	3L	13433178	13433265	TACTACCTTTGTCGCTCTG		58	13433107	13433125	AGGATGTACACAGCTTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33703	FBgn0053703	FBtr0091691	1	1	1	251	3L	9505479	9505550	ATCGTTCTTAACCTTGGTG		57	9505192	9505210	CATGTAAACACCGTTTGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tequila	FBgn0023479	FBtr0076526,FBtr0076525,FBtr0076528	3	3	4	102	3L	9082959	9082977	GCAAAGATGAGGCTAACTG		58	9083042	9083131	CATTGACCATTAGCCTTGAC		58	NA	
Drosophila melanogaster	50	CG7185	FBgn0035872	FBtr0076710	3	1	1	77	3L	8305157	8305385	AGAGCTGTTTCTGATGCAG		59	8305098	8305117	TTTGATCAGTGAAATGGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32387	FBgn0052387	FBtr0076920,FBtr0076919,FBtr0110848	3	3	3	88	3L	7158306	7158395	ATGGGTTCTAGTATCCAATGC		59	7158238	7158256	CCATGCGGAGTTGATAGAG		59	NA	
Drosophila melanogaster	50	Cpr65Eb	FBgn0035736	FBtr0076928	3	1	1	107	3L	7081709	7081798	CAACGTCGTTGTACTTGTG		59	7081620	7081638	TTCAGTTCGTTGACAAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7386	FBgn0035691	FBtr0076999	1	1	1	60	3L	6184215	6184291	CGAATGCAAGGTTTGTGAC		59	6184312	6184333	CTTCAGATGATTGTTGAGACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10478	FBgn0035657	FBtr0077069	2	1	1	144	3L	6003671	6003757	AATTTAATTGCGAAGGCTGG		59	6003546	6003567	CGTGTCTTATGATATAGTCACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32846	FBgn0052846	FBtr0073009	3	1	1	129	3L	2951189	2951270	GATGATCCCAATGCTTCTG		58	2951078	2951098	ATTGGTAGTAGTCCGAAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15822	FBgn0035308	FBtr0072917,FBtr0114630	2	2	2	76	3L	2157416	2157434	CAACATCCACGAGATTCAG		58	2157127	2157376	CATAGTGGTAGATGCTCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9184	FBgn0035208	FBtr0072725	3	1	2	245	3L	1322692	1322759	TGGTTTGGTTATCCTGCAG		59	1322465	1322484	TAATGGTGTTGTACTGACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34413	FBgn0085442	FBtr0112685,FBtr0112684,FBtr0112683,FBtr0112686	3	4	4	81	2R	20770530	20770605	CTTCCTGCAAGTGATAACG		58	20770649	20770668	AAAGTTCACTAGGATAGGCG		59	NA	
Drosophila melanogaster	50	CG16912	FBgn0035064	FBtr0072429	1	1	1	111	2R	20670493	20670512	TAAAGGCTATCGAGCAACAG		59	20670349	20670422	GCATTGTTGACGATTATTAGGG		59	NA	
Drosophila melanogaster	50	CG30272	FBgn0050272	FBtr0071890	3	1	1	83	2R	18717779	18717855	CCAAACTTTCCAGAGTACGA		59	18717901	18717919	CTGTGTCAGTATGTAGCCC		59	NA	
Drosophila melanogaster	50	CG30196	FBgn0050196	FBtr0071927	1	1	1	60	2R	18542579	18542689	CTTCTCTGCTGTAATCCCA		58	18542537	18542555	AGCTGCAGTAGTGATTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16739	FBgn0034505	FBtr0086286	1	1	1	174	2R	16229782	16229802	GCTTAAGGATCTGTACTTCAC		58	16229938	16230018	CACTTTGACAATTCGAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15082	FBgn0034397	FBtr0086617	3	1	1	279	2R	14718797	14719686	TATTTGCAGGTCCACTACG		59	14719929	14719947	GGGTCGAGATAGCTATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15096	FBgn0034394	FBtr0086633,FBtr0086632	1	2	2	97	2R	14696278	14696409	ATTGTCACAAATGAGCACG		59	14696199	14696217	CCGAAGATCACGTACAGAG		59	NA	
Drosophila melanogaster	50	Hsf	FBgn0001222	FBtr0110964,FBtr0086782,FBtr0110966,FBtr0110965	2	4	4	235	2R	14020428	14020510	GTATGGATTCCACAAGATCAC		58	14020213	14020231	AATCCAGATTGTCCTGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10257	FBgn0033985	FBtr0087408	3	1	1	145	2R	10830749	10830767	ATGATTTGGGTCAATGGAC		57	10831382	10831400	ATGTAGAGGGAGTACTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tfb1	FBgn0033929	FBtr0087548,FBtr0087549	2	2	3	158	2R	10251001	10251083	GTTATGCGGATATCAAGACTC		58	10251203	10251221	ATAGCTCCTTGACCTTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	RN-tre	FBgn0020620	FBtr0087603,FBtr0087605	2	2	3	123	2R	9877122	9877201	CAGGACAGACAAATATGGCT		59	9877018	9877039	CTGATTTAGCATCTTCATCCAC		59	NA	
Drosophila melanogaster	50	cnn	FBgn0013765	FBtr0100656,FBtr0087705,FBtr0087704,FBtr0100654,FBtr0087703	2	5	5	84	2R	9327822	9327906	AAGTCAGAGGAATCTACATCAC		59	9327759	9327777	GATCTACCTTGGCACAGTC		59	NA	
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835	3	6	8	184	2R	8505421	8505504	GATAATGAGAATCGAATGGAGG		58	8505951	8505969	GTTATTGCATCTCGCTGAG		58	NA	
Drosophila melanogaster	50	CG13177	FBgn0040759	FBtr0112772	2	1	1	82	2R	8051418	8051500	CCTATAGAGGACAAGAAACCC		59	8051544	8051562	GATGGAGCTGCATAGTAGC		59	NA	
Drosophila melanogaster	50	inv	FBgn0001269	FBtr0088068,FBtr0088070,FBtr0088069,FBtr0088067	1	4	4	60	2R	7364318	7364339	AGCATAGACAATATCCTGAAGG		59	7364360	7364378	TTAAAGCACCAATCTTGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18336	FBgn0040763	FBtr0088175	3	1	1	269	2R	7181676	7181755	CGATTTGGTTTCGACTTCC		59	7181425	7181443	TCAATCATGATTGAGGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18336	FBgn0040763	FBtr0088175	1	1	1	64	2R	7181676	7181755	CGATTTGGTTTCGACTTCC		59	7181630	7181648	AAATGCATGTCGTTCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp47a	FBgn0033573	FBtr0088200	2	1	2	60	2R	6797429	6797447	TGAATCGAGTTCTAGTGCT		57	6797470	6797569	ATGTTTATCTCGCTCAAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30016	FBgn0050016	FBtr0088241	1	1	1	74	2R	6762775	6762848	TATTGGATACTTCGGTGGG		58	6762719	6762737	ATTCCTGAATCTCGTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1663	FBgn0033449	FBtr0088477	3	1	1	75	2R	5724934	5725011	CATGACTACATCTCGAACCA		59	5725049	5725067	AGTACTGAATAACTCCGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rya-r44F	FBgn0011286	FBtr0088640,FBtr0088638,FBtr0088637,FBtr0088639	2	4	4	82	2R	4772299	4772385	TTGTTAACGGCACTATTGG		58	4772428	4772449	GAAGTACTTAAGAATCAGCTCC		58	NA	
Drosophila melanogaster	50	CG12822	FBgn0033229	FBtr0088842,FBtr0088841	2	2	2	158	2R	3719998	3720016	GACATTGAGACGATAACCC		57	3720138	3720215	ATAATTGCTCTGACCTTGG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG34215	FBgn0085244	FBtr0112408	2	1	1	60	2R	2719085	2719103	GTGTGAGCGAATCATATGC		59	2718989	2719061	ATAGGCACCACATGATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7845	FBgn0033059	FBtr0086023	3	1	1	63	2R	1962597	1962615	GTGGACAATGAATACGAGG		57	1962489	1962570	ACTCATTATCGCTGTCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34136	FBgn0083972	FBtr0110944	3	1	1	81	2L	21097208	21097226	CTGTCGTTTCCCTACTGTG		59	21097270	21098594	AATTGTTGGTGCTCATTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40169	FBgn0058169	FBtr0100179	2	1	2	99	2L	20238606	20238626	CGCCTTTAAGTCTTCTTTGTC		59	20238687	20245322	AAACTGCTCTTCATCAGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	TotF	FBgn0044811	FBtr0081310	2	1	1	71	2L	19912252	19912330	GAAGACAGTCATTCTATTTGGC		59	19912202	19912220	TCACTCTGTGCATGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sick	FBgn0085372	FBtr0112547,FBtr0112549,FBtr0112548	3	3	3	86	2L	19926498	19928628	CAGCAATAGCATAAGATCGAC		58	19928676	19928694	TAGTAGGGCTCGATTTCCA		59	NA	
Drosophila melanogaster	50	l(2)37Bb	FBgn0002021	FBtr0081177	3	1	1	66	2L	19051030	19051110	AGAAGGATGACACGTATGC		59	19050982	19051001	GAGAATTGCTGACAAAGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6115	FBgn0040985	FBtr0080959	1	1	1	94	2L	16887665	16887798	AAGCACTTGCAGTATTTGG		58	16887589	16887607	TCCTTGTGGTTCATGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33641	FBgn0053641	FBtr0091618	1	1	1	63	2L	13529420	13529499	CCCTTTAAAGCGAACTTTACC		59	13529524	13529542	GTGGTAGCTCTTCTTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nub	FBgn0085424	FBtr0112642	3	1	2	119	2L	12614102	12614120	ATAAGGTCCTGGAACTGAC		58	12614201	12622983	GACTGATATCATTTGGGTCCT		59	NA	
Drosophila melanogaster	50	CG14930	FBgn0032366	FBtr0080245	1	1	1	141	2L	11520511	11520532	CATCAATAGATCCTATAGCTCG		57	11520391	11520410	CGATAAATTGACAGTTGCCA		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4709	FBgn0032169	FBtr0079884	1	1	1	70	2L	9955463	9955481	TTTACCTTTAAGCCGACGG		59	9955575	9955593	ATAAGCTTAGAGCCGATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pka-C1	FBgn0000273	FBtr0079851,FBtr0079850,FBtr0079852	3	3	3	70	2L	9696917	9696935	AGATCATTCTGTCCAAGGG		58	9696865	9696883	CATTTCGTAGACGAGTACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	numb	FBgn0002973	FBtr0079821,FBtr0079822	1	2	2	85	2L	9460672	9460690	TTCCGTCAAGTATCTGGGA		59	9460739	9460941	ATTGCCTCAAGACCTTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9468	FBgn0032069	FBtr0079741	3	1	1	91	2L	8779040	8779058	GCGTTTCAAGAAGGTTCAC		59	8778903	8778985	GTTTGACTTGCGAAGTCTG		59	NA	
Drosophila melanogaster	50	CG13784	FBgn0031897	FBtr0079414	1	1	2	192	2L	7219081	7219099	ATCAATGATGAGATGGGCC		59	7218853	7218926	TCCAGAAGAGTATTCTCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13773	FBgn0042092	FBtr0079372	1	1	1	184	2L	6907124	6907240	GCTCCAAAGAACAAATCCA		58	6906958	6906976	GTCTTTGTAGTGTCACCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Thor	FBgn0022073	FBtr0077524	1	1	1	165	2L	3478760	3479202	GGCACCAAACTTATCTACG		58	3479331	3479349	ACTTGGTCTGCTTGATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10874	FBgn0031395	FBtr0077849	1	1	2	121	2L	2191942	2191960	TGACCTATGTGAATGAGCG		59	2190774	2191857	AACATCGGGAACTTTCAGG		59	NA	
Drosophila melanogaster	50	Or22b	FBgn0026397	FBtr0077874	2	1	1	80	2L	1523516	1523676	CGCTTGATATTGGACTATGTC		58	1523716	1523736	AATACCGATCAAGAGGAACTG		59	NA	
Drosophila melanogaster	50	CG3662	FBgn0031285	FBtr0078012	3	1	2	231	2L	823534	823552	TGAAGGTCTACATGATGGA		57	823813	823832	GGTTGTGTTATCATATGGGT		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG1702	FBgn0031117	FBtr0077310	1	1	1	83	X	20339661	20339679	TCATTATCTTCCGGCTGAG		58	20340068	20340086	TGAAGTCTTCGGTCAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12701	FBgn0031071	FBtr0074808,FBtr0074807	3	2	2	60	X	19675007	19675026	CAGTCACCCTATCATCAGTC		59	19674966	19674984	CGTACTCCTGCTTGATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ste:CG33244	FBgn0053244	FBtr0073881	1	1	1	60	X	13945074	13945093	GTATTTCAGCGAGATACTGG		57	13945033	13945051	CAAGCCAGAGGAACTATCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ptp10D	FBgn0004370	FBtr0073525,FBtr0073524,FBtr0073522	3	3	3	91	X	11518239	11558771	TTACACTAAAGGACGTTCGA		58	11558824	11558843	ATAGTCCAGTCGATAGGAGG		59	NA	
Drosophila melanogaster	50	Klp10A	FBgn0030268	FBtr0073478,FBtr0073475,FBtr0073477,FBtr0073476,FBtr0073479	1	5	5	93	X	11027534	11027552	TTGTGACCCTGAATATGCC		59	11027383	11027477	AGAAGATCGAAGACCTTGC		59	NA	
Drosophila melanogaster	50	CG3323	FBgn0029750	FBtr0070758	3	1	1	60	X	5198944	5198962	GGTGAATACACCACATGAC		58	5198902	5198920	TAGCTTATCATCACTGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tip60	FBgn0026080	FBtr0070668	2	1	1	133	X	4009236	4009360	ACTATAAACGACATCTGCGA		58	4009122	4009140	TGTTGCTCGATGATAACCC		59	NA	
Drosophila melanogaster	50	RpL36	FBgn0002579	FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156	2	4	4	115	X	522710	522793	CTTGAAGAACATCCAAACCC		59	522614	522632	TATCCTTGGACACCTTCAG		58	NA	
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0113466	1	1	9	81	3R	24728521	24745224	ACTATCTAACAGCAAAGCC		57	24745269	24745287	CTGTGATGGAGAATGTCTC		57	NA	
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113301,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	3	8	8	82	3R	24639525	24639610	GTTGACAATGAGTCTGATGC		59	24639653	24639673	CAATATCCGTAGCAGTAAGGA		59	NA	
Drosophila melanogaster	50	Cyp6a18	FBgn0039519	FBtr0085183	3	1	1	60	3R	23305686	23305705	GACAGTCGGTCATTATTCCA		59	23305727	23305746	GGTTCGGGATAAATACTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	e	FBgn0000527	FBtr0084106	1	1	1	84	3R	17056439	17056457	CTTCTATAACAAGGCCGAC		57	17056312	17056394	CCAGATATCGTTCAGTATATCG		57	NA	
Drosophila melanogaster	50	cic	FBgn0028386	FBtr0112787	3	1	2	192	3R	16122039	16122058	CATACAAGCTGAACAATGGT		58	16122210	16122828	GCTTCTTCATCTCTAAGATCTG		58	NA	
Drosophila melanogaster	50	CG17836	FBgn0038661	FBtr0083701,FBtr0113246,FBtr0083702,FBtr0083703,FBtr0083700	2	5	5	92	3R	14751507	14751633	AATGATGATCGGTTCGAGG		59	14751689	14751707	CTCTACGATGTCTGCATGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	htl	FBgn0010389	FBtr0083548,FBtr0083550,FBtr0083549	1	3	3	60	3R	13872690	13872708	ATATCTTCGTCTTTGGCGG		59	13872648	13872666	GCATAGAACACAAACAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31190	FBgn0051190	FBtr0113397,FBtr0113398	3	2	4	175	3R	13308946	13309029	ATAAATGTGAATGAACCCGC		58	13308790	13308808	ATCTCCGCTATGCTAAACC		59	NA	
Drosophila melanogaster	50	His4r	FBgn0013981	FBtr0082962,FBtr0082963	1	2	3	114	3R	10451846	10451864	TAACATCCAGGGTATCACC		58	10451941	10452024	AAGGAATACCTTTAGCACAC		57	NA	Nonspecific
Drosophila melanogaster	50	desat1	FBgn0086687	FBtr0082630,FBtr0082628,FBtr0082627,FBtr0082626,FBtr0082629	1	5	5	88	3R	8271987	8272005	GTCGATCTATCCGATCTGC		59	8272118	8272136	ATGATGAAGCAAGCAATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33779	FBgn0053779	FBtr0091780	3	1	1	60	3R	4030132	4030150	GAGTTAAGACGGACTTTCC		57	4030090	4030111	TAGTATATTCCCTTTGGTAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gfzf	FBgn0053546	FBtr0091512	2	1	2	162	3R	2972811	2973414	CTACGGCTCTATTGTACCC		58	2972667	2972685	CTTCGAGTACTCCTCAGAG		58	NA	
Drosophila melanogaster	50	CG3618	FBgn0037028	FBtr0078271	1	1	1	60	3L	20808837	20808857	ATCTATGCTCCACTAAGTCAG		58	20808797	20808815	GGATCTCAATTTCCTCGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Deaf1	FBgn0013799	FBtr0100666,FBtr0074882	1	2	2	210	3L	19812918	19812936	AAGTACAAGGACAAGTGGC		59	19821425	19821443	GTGTAAAGAGACGGACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6664	FBgn0036685	FBtr0100439,FBtr0075294,FBtr0075295,FBtr0075293	2	4	4	72	3L	17008132	17008150	CAAGACCAAGTGCAAAGTG		59	17007996	17008097	TTTGGCTTGAATGATGACTG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	2	8	8	121	3L	16956903	16956980	GATTCACAAGGGTCTATTGC		58	16957064	16957082	CATGGATTCCCTCCTTCAG		59	NA	
Drosophila melanogaster	50	CG13713	FBgn0042199	FBtr0073346	2	1	1	113	3L	4697704	4697723	CCACTGTCACCTATCATCTG		59	4697798	4697817	TATTGGATATGAGCTCGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32244	FBgn0052244	FBtr0073325,FBtr0073324	2	2	2	96	3L	4505303	4505413	TAAAGTTTGAACAGGTTCGC		58	4505226	4505245	CGGGTAGAGCTCTTTATGAG		59	NA	
Drosophila melanogaster	50	CG14968	FBgn0035431	FBtr0073087,FBtr0073090,FBtr0073089,FBtr0073088,FBtr0073086	1	5	5	79	3L	3300765	3300783	CAGTAGTACCACCGATCTG		58	3300029	3300047	CGGAACCAATGTACTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32306	FBgn0052306	FBtr0072894,FBtr0072892,FBtr0072893,FBtr0072895	3	4	4	84	3L	2464050	2464068	TGAAACTACCGCAGATCAC		59	2464115	2464134	GAGTAGTGATCCATGGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1275	FBgn0035321	FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906	1	4	4	62	3L	2253685	2253787	GTATGGCAACTCCATTCTG		58	2253641	2253659	AGCTTCAGAGTCTTCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	5SrRNA:CR33367	FBgn0053367	FBtr0086359	1	1	1	60	2R	15648567	15648585	AATACATCGGTTCTCGTCC		59	15648525	15648543	CTAAGTACTAACCGCGTCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34214	FBgn0085243	FBtr0112407	2	1	1	61	2R	20553148	20553166	CTTCGACAAGATCATGCTG		58	20553105	20553123	TGTTCTGATAGAAGACCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Xbp1	FBgn0021872	FBtr0071571,FBtr0071572	2	2	2	77	2R	17031706	17031724	GAAGCTAAAGAACCGTGTG		58	17031765	17031783	ATCTCGTAGTCCATCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086450,FBtr0100390,FBtr0100392	1	3	15	89	2R	15361465	15365132	GAGACAAATCTGTTCGATCG		58	15365184	15365202	AAAGGTTGAACGTGATGGA		59	NA	
Drosophila melanogaster	50	Vha44	FBgn0020611	FBtr0087175,FBtr0087173,FBtr0087176,FBtr0087174	3	4	4	85	2R	12214368	12214386	GATTTGGTCAAGAAGGAGC		58	12214239	12214319	TCATTAGCCATGACCTTGG		59	NA	
Drosophila melanogaster	50	cg	FBgn0000289	FBtr0087526,FBtr0087528,FBtr0087529	2	3	7	108	2R	10064189	10065378	CAAGAACTGTGACATACTTCC		58	10065448	10065466	CTCCAACTTTAGGTTGGGT		59	NA	
Drosophila melanogaster	50	CG8233	FBgn0033897	FBtr0087582,FBtr0087584,FBtr0087583	2	3	3	83	2R	10037317	10037743	TTTGTTCCTCACAATGATGC		59	10037253	10037271	AGTTATCACCTTTGGCAGG		59	NA	
Drosophila melanogaster	50	cag	FBgn0017414	FBtr0088239	2	1	1	60	2R	6781279	6781297	ATTGGAAAGACACAAGCAG		58	6781237	6781256	ACAGACCCTCTTTAATCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089345,FBtr0089343	2	2	26	189	2R	6419762	6419780	TGTTGAGGATTTGACACTG		57	6393565	6419549	CGTAATACTCAGATCTTGGG		57	NA	
Drosophila melanogaster	50	osp	FBgn0003016	FBtr0089865,FBtr0089866,FBtr0114465	1	3	3	106	2L	14605240	14610697	GATCACAAATCGGGTTTCC		58	14605152	14605171	GACTCAGATTCGTTATGGTG		58	NA	
Drosophila melanogaster	50	CG17646	FBgn0031362	FBtr0077886,FBtr0077885	2	2	2	93	2L	1747846	1748777	CTGTGGTCTTGACATTTCC		58	1748834	1748852	ATCAACGAGAGGAAGTAGG		58	NA	
Drosophila melanogaster	50	ia2	FBgn0031294	FBtr0089789,FBtr0089790	2	2	2	80	2L	1014710	1014791	TATCACATCTATGAGGTTCACC		59	1014651	1014671	GTTCTTCAGGTAGAAAGAACG		58	NA	
Drosophila melanogaster	50	jar	FBgn0011225	FBtr0100171,FBtr0100172,FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173	2	6	6	82	3R	20082819	20082909	ACGGTTATCATGGTTCCTC		59	20082755	20082774	AATAGTCGACTGTAGATGGC		58	NA	
Drosophila melanogaster	50	CG11391	FBgn0038732	FBtr0083789	1	1	1	63	3R	15605145	15605341	GAAATGCACAGCTATCTGG		58	15605368	15605386	TTAGCCAATCCAATGTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34303	FBgn0085332	FBtr0112499	2	1	1	222	3R	5977270	5977346	CCATATCAGAGGTTGAGATCC		59	5976999	5977017	GGAGACCAATTCCACAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6767	FBgn0036030	FBtr0076416,FBtr0076415	3	2	2	147	3L	9677737	9677755	TGTATGCTATTCTGACGCA		58	9677545	9677626	GAGACATCAATGCACTGGA		59	NA	
Drosophila melanogaster	50	pita	FBgn0034878	FBtr0072113,FBtr0072112	1	2	2	132	2R	19437404	19437478	GTCATGAGACAGTCCACTC		59	19437290	19437308	CAGTACTTGCAGGGATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15097	FBgn0034396	FBtr0086631	3	1	2	206	2R	14712073	14712225	CTATGCGATGTTCAACGAC		58	14711885	14711903	AGCAAGAACTTACAGCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp6a23	FBgn0033978	FBtr0087452	1	1	1	74	2R	10764395	10764413	AACGAGTTTACCTACGAGG		58	10764451	10764534	ATACTTGCGAAGGGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11196	FBgn0033248	FBtr0088870	3	1	1	129	2R	3882127	3882145	AGTTAGTTCCAAGATGGCC		59	3881846	3882034	GTAGTTACGTCGCTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14591	FBgn0033054	FBtr0086026,FBtr0086025	1	2	2	60	2R	1925264	1925338	TACATTATCCGAAGCGGAG		58	1925222	1925240	TATGTGACCAGTGGAACTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5945	FBgn0032494	FBtr0080450	3	1	1	170	2L	13240690	13240708	GTGAATTCAACGTAACGCT		58	13240894	13241506	TATCCAGTTCAGGATCTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17261	FBgn0031501	FBtr0077656	3	1	1	70	2L	3043044	3043063	AACATAAACCTACGTTGCTG		58	3043096	3043191	CACAGAAGAGCACATTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me28S-C2645c	FBgn0082936	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG17159	FBgn0039945	FBtr0113720,FBtr0113717,FBtr0113718,FBtr0113721,FBtr0113719	1	5	5	60	XHet	67548	67566	TACTCACTTAAATCGCCCA		58	66298	66316	TTATAGACGTTTGATGCGG		57	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	snoRNA:Psi28S-3436b	FBgn0086602	FBtr0091803	1	1	1	118	X	6636490	6636508	ACTAGGTGGTTATCCTCCA		58	6636390	6636408	CAAGGTTCAGGTAGAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32660	FBgn0052660	FBtr0073592	2	1	1	63	X	11814477	11814495	ACAACTCGTTTCGTAACGA		59	11814360	11814451	CGCATGAAACTCAATTACAC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG41482	FBgn0084042	FBtr0111177	1	1	1	90	X	22092691	22092709	ATGCAGCAAAGAAGTATGG		58	22083318	22092638	AGTGTACTGTAGGGTATCCT		58	NA	
Drosophila melanogaster	50	CG12564	FBgn0031179	FBtr0077216	1	1	1	70	X	21306509	21306527	ACGACTACAACACATGGAC		59	21306457	21306475	CTGACACATGTATTTGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077204,FBtr0077206	2	2	8	175	X	21247655	21247673	ATATGTTCCAGCGAGAAGC		59	21251117	21251692	CCAAAGGATCTTAGCCTCTC		59	NA	
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077207,FBtr0077204,FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077206,FBtr0077210	2	8	8	103	X	21253980	21254060	CAACACGATTGTAAAGGCTG		59	21254126	21254144	TCATTTCCAGGGTGATACG		59	NA	
Drosophila melanogaster	50	CG17068	FBgn0031098	FBtr0077341	2	1	1	60	X	20120077	20120095	TATCCCATGTACTCCTGTG		57	20120035	20120053	CGTTGAACATGAACTTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089398	1	1	13	84	X	20105884	20105902	TGGTCTACACAAAGCAGAC		59	20101661	20104507	TCGTCGTCTCCATAATAATCC		59	NA	
Drosophila melanogaster	50	CG14235	FBgn0031066	FBtr0074817,FBtr0074815,FBtr0074816	3	3	3	195	X	19638353	19638371	CATCGCTATAGCTATCGCC		59	19635080	19635098	GGAAGTCGATGTACGACTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14235	FBgn0031066	FBtr0074817,FBtr0074815,FBtr0074816	1	3	3	188	X	19638353	19638371	CATCGCTATAGCTATCGCC		59	19635087	19635105	GATGTACGACTGGTAGCAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Mec2	FBgn0030993	FBtr0074669	2	1	1	265	X	19083572	19083682	CGTTGAGATCAAGGATGTC		57	19083990	19084008	GATACGGAGTAAGCAGCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34329	FBgn0085358	FBtr0112531	1	1	1	69	X	18944763	18944781	TCTCACTGGAAACTATGGC		58	18944812	18944832	GGTGCTTATCAAGTTGATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6696	FBgn0030947	FBtr0074611	2	1	1	84	X	18554696	18555284	CATAGAGCCATTGGATCCG		59	18554630	18554649	GTACATCTCGTTTAGCTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG15042	FBgn0030937	FBtr0074619	2	1	1	60	X	18421127	18421147	TACATAAACATCCTAGAGGGC		58	18421087	18421107	TGATATCGCTTCGTAGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CrebB-17A	FBgn0014467	FBtr0074555,FBtr0074556,FBtr0112879,FBtr0074554,FBtr0074557,FBtr0112877,FBtr0112878	1	7	7	160	X	18267097	18267115	GGAGTCATACAGACAGCAG		59	18267324	18267342	TTACACGGAAAGGTTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Taf8	FBgn0022724	FBtr0074514	1	1	1	80	X	17996670	17996688	CAAAGTTCCTCTGCAAGAC		58	17996732	17996805	GTTTGCAGGCAATTAAAGG		57	NA	Nonspecific
Drosophila melanogaster	50	ppk23	FBgn0030844	FBtr0112998,FBtr0100574,FBtr0074491	3	3	3	125	X	17462376	17462395	TTCAACAGTCGTTTCAAGTC		58	17462088	17462223	GATAAAGATACGTGAAGTGCTG		59	NA	
Drosophila melanogaster	50	Fim	FBgn0024238	FBtr0074443,FBtr0074441,FBtr0074442	2	3	3	117	X	17182047	17182065	CTCAATCTAGCCTTCGTGG		59	17181556	17181966	AATTGCGGTAGGTCTTCTC		59	NA	
Drosophila melanogaster	50	CG5070	FBgn0030824	FBtr0074389	3	1	1	76	X	17097390	17097408	GGATCTGGCTATGGATCAG		58	17097447	17097466	GATACCTTGATCACCTTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mei-218	FBgn0002709	FBtr0100640,FBtr0100639	1	2	2	89	X	17033337	17033420	TCTAGATTGAGCCAAAGACG		59	17033267	17033285	AGGATTTGGTAGTTGCTCG		59	NA	Nonspecific
Drosophila melanogaster	50	Cap	FBgn0015615	FBtr0074291,FBtr0074290	2	2	2	95	X	16483582	16483674	GATGAGATAGATCAGGCGC		59	16483505	16483523	CGTTGTCGTAATGAACTGG		58	NA	
Drosophila melanogaster	50	eIF-2alpha	FBgn0004925	FBtr0074300	3	1	1	76	X	16340721	16340739	CAACAAGCTGATTCGTGTC		59	16340663	16340681	GATCGATGTAGCCCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nonA	FBgn0004227	FBtr0100586	2	1	3	143	X	16259517	16259535	ATAGCAATTCGCCATTCGA		59	16259713	16259733	CCACAGATCTATTGGTTACTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Chc	FBgn0000319	FBtr0112798,FBtr0074180,FBtr0112797,FBtr0074182,FBtr0074181,FBtr0074179	2	6	6	93	X	15722670	15722757	CTTTATCAGTGTTACGACTTGC		59	15722598	15722616	GAATCAAATAGGGCATGGC		58	NA	
Drosophila melanogaster	50	mRpL3	FBgn0030686	FBtr0074090	3	1	1	193	X	15655384	15655404	TAATCAATTACTGGGTCTCCG		59	15655679	15655697	CAAAGTTATTGGTGCCCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Graf	FBgn0030685	FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197	2	6	6	81	X	15646356	15646434	TAACCAATGTTCGTTACTCC		57	15646294	15646312	TAGTTCTCCGGAATGAGTC		58	NA	
Drosophila melanogaster	50	CG15601	FBgn0030673	FBtr0074055	1	1	1	60	X	15605878	15605898	CTTATTATATTCGGCCAGAGC		58	15605918	15605938	GAGAATATGAATCCGGAATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8119	FBgn0030664	FBtr0074051	1	1	1	60	X	15556959	15556978	CAAGCTAATTCTACATCCGC		58	15557001	15557019	TTTGAATGCCGAATAGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15028	FBgn0030618	FBtr0112985	1	1	2	60	X	15075468	15075487	CTATGGGCCTCATTATTGTC		57	15075508	15075528	ATAGCGCAGTACATAGATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fbxl4	FBgn0030555	FBtr0073923	2	1	1	102	X	14129631	14129703	AATCTGATAGAGTTGAGCCTG		59	14129549	14129567	GAAAGAGATCGAGACGCTC		59	NA	
Drosophila melanogaster	50	mew	FBgn0004456	FBtr0073731,FBtr0073732	2	2	2	83	X	13109887	13109963	AATAACATAGAGGTGGAGACG		59	13109824	13109842	GATGATAATCAGCCACGGT		59	NA	
Drosophila melanogaster	50	CG15730	FBgn0030395	FBtr0073667	1	1	1	60	X	12390170	12390190	CAGTGATAATAGTCGTCCTCC		59	12390130	12390148	GCAGAGTTCCTTATTCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11245	FBgn0030388	FBtr0073646	3	1	1	60	X	12337554	12337573	TCTGACCAGGATTAACTCAC		58	12337596	12337614	TGAACCATAACTCGGTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34323	FBgn0085352	FBtr0112525	1	1	1	60	X	11964609	11964627	CCTGGGTATTGAAGTACGA		58	11964648	11964669	CCCTGATTAACGTGAATAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2446	FBgn0030328	FBtr0073615,FBtr0073618,FBtr0073619	2	3	5	95	X	11607717	11607801	CAGGAGACTAAACACCAGC		59	11607640	11607658	GGTGGTATCGCTGTATCTC		59	NA	InUTR
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0112813	1	1	12	81	X	11296749	11296767	TCTACAGGGTGGAGTTACC		59	11296812	11299316	TCCTCGGAAGGATAGTCAG		59	NA	
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	3	8	9	95	X	10692567	10692660	GAATAAGGGTGAAATTTGCC		57	10692491	10692509	TGCATGATCCGTTTAATGG		58	NA	
Drosophila melanogaster	50	Gip	FBgn0011770	FBtr0071472	3	1	1	60	X	10223470	10223488	GCAAGATTCATCTAACCGC		58	10223428	10223447	GTCTTCGTGTAGTCACTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34319	FBgn0085348	FBtr0112521	3	1	1	190	X	10150175	10150193	CTGAGTCGCTATTTGATGG		57	10149162	10149180	ATCTCAAAGTCCAGCAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2974	FBgn0030178	FBtr0071488	2	1	1	91	X	9979879	9979897	AAGTTCAGTGTGGATCAGC		59	9979806	9979824	ATTCGTGGATGCTTCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1354	FBgn0030151	FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386	3	4	4	161	X	9674775	9674793	TCTGCTCAAGAACTTGGAC		59	9674918	9675202	AAGGCCTCAATATCATGGG		59	NA	
Drosophila melanogaster	50	CG34028	FBgn0054028	FBtr0100083	3	1	1	60	X	9405864	9405885	GCGAGGTTAATATCTATCGGAG		59	9405903	9405924	GAATATGGCTCGAGTTTATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12111	FBgn0030050	FBtr0071232	3	1	1	60	X	8464755	8464775	ATTCCATCGGAGATTGATACC		59	8464715	8464735	CGATGTAGTAATAGTTGTCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15336	FBgn0030009	FBtr0071156	2	1	1	60	X	8042079	8042097	ATAATCGGCGACTTATGTG		57	8042121	8042139	TGCAGATTCCAATAGATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gclc	FBgn0040319	FBtr0071108,FBtr0071107	2	2	2	111	X	7997904	7997923	CCATTGAACAGTATCTTCGC		58	7997746	7997830	GAATCCTGCTTGTAATCCG		58	NA	
Drosophila melanogaster	50	CG1530	FBgn0029983	FBtr0071097	1	1	1	82	X	7834384	7834405	GGACATTTAAGTTCGAGTTTCC		59	7834447	7834536	GAGGTGTTCCTTGTAATCCT		59	NA	
Drosophila melanogaster	50	CG8300	FBgn0029937	FBtr0071015	2	1	1	141	X	6999960	6999979	AATTGGAGAACTACCACAGG		59	7000083	7000101	CATAGGACGATGGTTTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Smg1	FBgn0052743	FBtr0070972	3	1	1	133	X	6728096	6728116	GTCGGAGATCTTAAGTACCAC		59	6728211	6728294	ATCAGCTCAGTCTTGTTGG		59	NA	
Drosophila melanogaster	50	COQ7	FBgn0029502	FBtr0070963	1	1	1	147	X	6666725	6666743	GTCAGATAATGGAGGCACC		59	6666917	6666935	TTGATTACCTCGGTCATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3367	FBgn0029871	FBtr0070920	1	1	1	117	X	6361762	6361846	CAGGATCACAGACCTAGTG		58	6361663	6361681	CAAAGAACATGGTCTGGTG		58	NA	
Drosophila melanogaster	50	Marf	FBgn0029870	FBtr0070909,FBtr0070910,FBtr0070908	1	3	3	102	X	6262083	6262570	AGGAATCGGTTAAGTCTCAG		58	6262635	6262653	ACGAAGAATACCCTTTCGG		59	NA	
Drosophila melanogaster	50	CG5941	FBgn0029833	FBtr0070867	3	1	1	115	X	5932573	5932591	CTCCTCACGTTATCCACAC		59	5932980	5932998	TATTTCGCCTACTTCACGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15766	FBgn0029813	FBtr0070832	2	1	1	151	X	5709770	5709788	GATTGCCGATGACATTGTG		59	5709637	5709656	ATAGCAGAAACTCCTTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070740,FBtr0100408	3	2	4	220	X	4961634	4961652	CTCCACAATGATTACGCTG		58	4962190	4962208	CGTTCACAAACTCAAGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(1)G0334	FBgn0028325	FBtr0070708,FBtr0070710,FBtr0070709,FBtr0070711	3	4	4	165	X	4598543	4598632	AAGTTAAGGCCATCGATCTG		59	4598757	4598778	TGGATGTGATCAATATCGTAGG		59	NA	
Drosophila melanogaster	50	Cyp4d1	FBgn0005670	FBtr0070428,FBtr0070427	1	2	2	103	X	2053587	2053665	CGAGATCAATGGAAAGCTC		58	2053502	2053520	GCTTGAAGATATTGGGCTC		58	NA	
Drosophila melanogaster	50	ph-p	FBgn0004861	FBtr0070432	2	1	1	60	X	2021131	2021150	CTGTCTGTAGTCACTTCTGG		59	2021090	2021108	GACGATCTGTTCCATTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	a6	FBgn0023130	FBtr0070279	1	1	1	137	X	1589105	1589123	ACAGCATCCTGATAACCAG		59	1588986	1589004	TTACCTCTTCGATGGTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14777	FBgn0026872	FBtr0070253	2	1	1	94	X	1362358	1362376	GAAGACCTTTAGTCAGGCC		59	1362498	1362516	TAATGGTCTGCAGGATAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	3	8	8	61	X	551391	551410	CATTATCTCATGGGATGCAG		58	551433	551452	ATATCAGCTCAAACAGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18273	FBgn0029525	FBtr0070094	3	1	1	125	X	378441	378459	AATAGGGATCCAGAGACAG		57	378271	378352	ATAGTTCAACGAGTGACCA		58	NA	
Drosophila melanogaster	50	CG13375	FBgn0040370	FBtr0070103	2	1	1	107	X	180915	180990	ATTACCCAGGTGTTCAAGG		59	180826	180844	ATTGTTACCAATCTGCTGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG17691	FBgn0039993	FBtr0113759,FBtr0113758,FBtr0113761	3	3	4	60	U	1179267	1179286	AATCTACGGGATAAGTACGG		58	1179309	1179327	TTCCTTGCTCACATAAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	myoglianin	FBgn0026199	FBtr0089093,FBtr0089092,FBtr0089095,FBtr0089094	2	4	4	86	4	714058	714079	CCTATTAATACCAACGATGAGG		58	713456	714011	ATGAGGTTGAATTTCCTCG		57	NA	
Drosophila melanogaster	50	CaMKI	FBgn0016126	FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065	2	6	7	96	4	467853	470559	TTTGAGAAGGTTCAGTGCA		59	470889	470910	CTCATACGTTTCTAAGAGTTGC		59	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-2442b	FBgn0082988	FBtr0113581	2	1	1	95	3R	1424239	1424257	CAACAACTCAATCGGTGTC		59	1424162	1424181	AAATCTTTAGATTGCTGGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ef1alpha100E	FBgn0000557	FBtr0085834,FBtr0085835,FBtr0085833,FBtr0085832	1	4	4	116	3R	27567452	27567470	CTTCAACGTGAAGAACGTG		59	27567550	27567645	TTGAGCACAATCACCTGAG		59	NA	
Drosophila melanogaster	50	CG15548	FBgn0039812	FBtr0085731	3	1	1	60	3R	26785969	26785987	TTCATCGCAATCGGATAGG		59	26786008	26786029	CTTCAATCTCTGATTTCTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34041	FBgn0054041	FBtr0100096	2	1	1	84	3R	26334331	26334401	GAATTTAGTCCTTTGGAGTCTC		58	26334446	26334464	TATTTAGCCAGTTCTCCGC		59	NA	
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634	2	4	5	103	3R	26212311	26213196	AGATTTCAAGTGCTCCCTG		59	26212226	26212244	TGATCTCCTCCTGGATCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	spn-A	FBgn0003479	FBtr0085589,FBtr0085590	1	2	2	60	3R	25881272	25881290	CAAGGAGCTGGATAAACTG		57	25881230	25881250	AAAGATCTCGGTAATGGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sry-alpha	FBgn0003510	FBtr0085557	2	1	1	60	3R	25868295	25868315	CGCCTTAAGATACTGTACTCC		59	25868334	25868355	GATTATCCCTGCATATCAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF2B-alpha	FBgn0039726	FBtr0085508	3	1	1	136	3R	25760961	25760979	ATGGCTGCCGTATATTGAC		59	25760788	25760861	CTTAACCATCTCTTCGCCA		59	NA	
Drosophila melanogaster	50	CG1907	FBgn0039674	FBtr0085447	1	1	1	60	3R	25446156	25446174	GATTCACGCCCTACTACTG		59	25446196	25446216	TCCAGAATAATGAAGGTCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11897	FBgn0039644	FBtr0085387,FBtr0085386	2	2	2	80	3R	24986115	24986197	CGAAACGATTTGCAAATCTC		58	24986238	24986258	CTGATATCCGTCTGATTTGTG		58	NA	
Drosophila melanogaster	50	CG11877	FBgn0039636	FBtr0085370	2	1	1	212	3R	24943568	24943586	TGGACTCCCTACTAATCGG		59	24943824	24943842	TCTGCGATCATTTGATCCA		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	beta4GalNAcTB	FBgn0039625	FBtr0085419	3	1	1	60	3R	24859502	24859522	CATCGAGGAATCAAAGATCGA		59	24859462	24859480	CTGGGAGACATTTCTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1894	FBgn0039585	FBtr0085290	1	1	1	60	3R	24310597	24310615	GCCAAAGTGCTTCTAAGTC		58	24310638	24310657	TGAAGAGATGAATCGTTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12885	FBgn0039523	FBtr0085185	2	1	1	300	3R	23356800	23357017	TGATGAAGCTGCAATACCA		59	23357281	23357299	TAGTAAACAGGATGGCCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	mrt	FBgn0039507	FBtr0085174	1	1	1	135	3R	23104813	23104907	TGATATAGGCTATGAGACGAC		58	23104698	23104716	CACTATAAACGGCAAGTGG		58	NA	
Drosophila melanogaster	50	CG14253	FBgn0039467	FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074	1	5	5	81	3R	22809875	22809893	GTATGCCTATGGAAGGCAG		59	22809935	22810014	CGGTAACTTAAAGATTTGGCTC		59	NA	
Drosophila melanogaster	50	CG5521	FBgn0039466	FBtr0085069	3	1	1	95	3R	22796538	22796617	GGTGTCAGATACTTCTTACTG		57	22796673	22796692	AATAAGACCAGGGATAAGGT		57	NA	
Drosophila melanogaster	50	ball	FBgn0027889	FBtr0085095	2	1	2	115	3R	22692030	22692048	GTGGGTGAGAAGAACTACG		59	22691877	22691895	AACTGTTTGATGTCCTCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ald	FBgn0000064	FBtr0085001	3	1	6	201	3R	22082687	22082705	AAGAAGGAGAACATTGCTG		57	22081879	22081897	TTGGGATATAGCTTCGCTC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	m1	FBgn0002578	FBtr0084957	2	1	1	60	3R	21840894	21840912	GTCAAGGAATGCTTCAAGC		59	21840936	21840954	TTCCATTGGTAATGCACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst57Db	FBgn0011669	FBtr0084915	3	1	1	68	3R	21656518	21656536	ATCCACATCAATAGTCCCA		57	21656468	21656486	TATTGAATTCTGTGCCTGC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG10553	FBgn0039324	FBtr0084853	2	1	1	166	3R	21142945	21143025	TAAATGATCTGCGCATTGTC		58	21142798	21142818	ATCGACAAAGTAGGTATCCTG		59	NA	
Drosophila melanogaster	50	danr	FBgn0039283	FBtr0084780	2	1	1	76	3R	20964604	20964622	TGAGTGTTAAGAACTGGGC		59	20964662	20964680	CTTATCGTTCACTTGCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11844	FBgn0046214	FBtr0084775,FBtr0084777,FBtr0113354	3	3	4	85	3R	20949829	20950321	ATAGAACTGGCGTCAAGTC		59	20950370	20950388	TAAGTCCTCAATGTCCTGC		58	NA	Nonspecific
Drosophila melanogaster	50	Ets96B	FBgn0039225	FBtr0084697	2	1	2	136	3R	20619263	20620058	GGTACAATGTGAATGTCAAAGG		59	20620154	20620324	TGGAAATCTGTAGCAGTACG		59	NA	
Drosophila melanogaster	50	CG31128	FBgn0051128	FBtr0084638	1	1	1	62	3R	20295265	20295283	CCTCTATGCTCAAACTGCA		59	20295309	20295327	AAATAGGCCAGAATGGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rox8	FBgn0005649	FBtr0084592,FBtr0084591,FBtr0084593,FBtr0084594	1	4	4	83	3R	19871216	19871234	TATTCCAACTACCAGGCAG		58	19870980	19871169	CCAGTTGACCTTGATTTCC		58	NA	
Drosophila melanogaster	50	CG10157	FBgn0039099	FBtr0084435	3	1	1	84	3R	19505325	19505344	GACATTCTGAGGAAGTACGG		59	19505388	19505467	CGTTATAAACGTTATCCAGAGC		59	NA	
Drosophila melanogaster	50	CG10175	FBgn0039084	FBtr0084423,FBtr0084421	1	2	3	103	3R	19350706	19351230	AAGATCTCTGCGGAAAGAG		59	19350621	19350639	TATAGTAGCCTCCTCGCTC		59	NA	
Drosophila melanogaster	50	CG13850	FBgn0038961	FBtr0084231	2	1	1	98	3R	18234854	18234872	AATGGAATGCTAGATGCCC		59	18234721	18234793	GCACAGTGCATCTATAAGGA		59	NA	
Drosophila melanogaster	50	CG7059	FBgn0038957	FBtr0084221,FBtr0084219,FBtr0084220	3	3	3	140	3R	18217574	18217648	AGCACATTGAGGGAATCTC		59	18217750	18217770	GCCTAATATACTCCTGATCCC		58	NA	
Drosophila melanogaster	50	CG7071	FBgn0038949	FBtr0084211,FBtr0084212	3	2	2	184	3R	18189675	18189693	ATTGAGTCCTGTGATCTGC		59	18189839	18189928	AGGCTCTTAATCTGATAGCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG34034	FBgn0054034	FBtr0100089	3	1	1	119	3R	17564482	17564500	TTGGTCTACCTAGTGAGTC		57	17563392	17563410	GCAGTGGTTTAAACTCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7922	FBgn0038889	FBtr0084109	2	1	1	64	3R	17309566	17309680	CAACACTTTCAGGCAAACC		59	17309707	17309726	ATTACGGATTCACGGTACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0114359	3	1	22	82	3R	17200833	17200851	CAGTCCCAGAACTACAGTG		59	17196937	17200787	TCGTAGGTGAGAACTTGAG		58	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0110937,FBtr0112915	3	12	12	137	3R	17037304	17037479	GATGTGATTAATCTCGCCG		58	17037580	17037598	TTCCATGATCGTGTAGAGC		59	NA	
Drosophila melanogaster	50	Atpalpha	FBgn0002921	FBtr0089510	3	1	8	108	3R	16774534	16787937	TTAAGGTCGGATTACGAGC		59	16788009	16789456	TGCGTCTTGACTTGTACTG		59	NA	
Drosophila melanogaster	50	CG3822	FBgn0038837	FBtr0083987	1	1	1	86	3R	16687386	16687460	TCTTTAGGGACTCAAAGATCTC		58	16687321	16687339	CATTGCTGGCTGTAAAGAC		59	NA	
Drosophila melanogaster	50	CG17270	FBgn0038828	FBtr0083994	1	1	1	60	3R	16643045	16643066	TTAACTTCTACGTGATCTTCCC		59	16642912	16642930	TAGATGAGGCCCAGTAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Elongin-B	FBgn0023212	FBtr0083947	3	1	1	84	3R	16404507	16404646	TTGACATTCAGGAACGAGG		59	16404441	16404459	TCATGACTTCGGGTAAGTC		58	NA	
Drosophila melanogaster	50	CG4360	FBgn0038787	FBtr0113252	1	1	2	127	3R	16152109	16152127	TTACCAACCACCTCAAGAC		59	16151913	16151931	TTGTTGAAGTTAGCATGCG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Rh3	FBgn0003249	FBtr0083876	2	1	1	60	3R	15907847	15907867	TATACTGGTCATCAATCTGGC		59	15907807	15907826	GAATATCGGAGTCTTGACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4572	FBgn0038738	FBtr0083861,FBtr0083860,FBtr0083862	1	3	3	60	3R	15688809	15688827	GTGGGCAATAAGACATTCC		58	15688767	15688786	TCTTCAAGTGAAGTTCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31226	FBgn0051226	FBtr0083675,FBtr0083676	2	2	2	222	3R	14677345	14677363	TATCCTTGCTATCCTTGCG		59	14677088	14677159	TTGCAAGAGATGTTCAGCA		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	PKD	FBgn0038603	FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592	3	4	4	203	3R	14131625	14132352	AGCAGCTCACTGAATATCC		59	14131440	14131458	CTTGTGCGTATTGTACTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7217	FBgn0038570	FBtr0100620,FBtr0100619	2	2	2	61	3R	13992156	13992174	TGTCGTGCAAATTTCTTGG		59	13992113	13992132	CAGTGAAATGATTTGTTGGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17803	FBgn0038547	FBtr0083528	3	1	1	80	3R	13626492	13626512	TCAGGATCTATATGACAGGGT		59	13626232	13626451	ACTCCTTGTTGTATCCACAC		59	NA	
Drosophila melanogaster	50	CG31190	FBgn0051190	FBtr0089444,FBtr0113397,FBtr0089443	3	3	4	90	3R	13307713	13307894	ATTGTTACCTGGCAGATCC		59	13307641	13307659	TGATGTTCTGCTTCTCCTC		58	NA	
Drosophila melanogaster	50	CG34279	FBgn0085308	FBtr0112474,FBtr0112475	1	2	2	66	3R	13228451	13228647	TACCAGAAGGATTATCGCA		57	13228403	13228422	CTAGAAGTTCGTCGTTACTG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG5246	FBgn0038484	FBtr0083405	2	1	1	60	3R	12961959	12961977	GATCCTGTCTCAATGTTCG		57	12962000	12962019	ATGATTTAACTGGTGACGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fas1	FBgn0000634	FBtr0083333	1	1	4	110	3R	12460096	12461277	TCGTTCAAGGAGAATGCTG		59	12461351	12461369	AATGGTCACTTCTGTCAGG		59	NA	
Drosophila melanogaster	50	CG6006	FBgn0063649	FBtr0113476	1	1	2	120	3R	11995751	11995823	TACCTCTTAACAAGATCGAGG		58	11995905	11995923	TGGTTGTCTGTCTTCTGAC		59	NA	
Drosophila melanogaster	50	CG18519	FBgn0038348	FBtr0083153	2	1	2	90	3R	11366293	11366380	TCTTATAAGATCTTGCCCAGAG		59	11366224	11366242	CAATCCTGTGCTGAATGTC		58	NA	
Drosophila melanogaster	50	Rh6	FBgn0019940	FBtr0083146	2	1	1	60	3R	11309219	11309240	GTGATGTACATCTTTACCTCGT		59	11309261	11309279	TGACCACAAACATGTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS10	FBgn0038307	FBtr0113237	1	1	3	83	3R	11056745	11056763	CAAATCCTTATACACCGCC		58	11056810	11056894	TTTGTAATGGAGGTTTCGG		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG7530	FBgn0038256	FBtr0083020,FBtr0083021,FBtr0083019	2	3	3	105	3R	10551835	10551853	AGTTCAACCCGTACATTCG		59	10551639	10551767	CTCCAGATGTTGATCGTCTC		59	NA	
Drosophila melanogaster	50	CG31313	FBgn0051313	FBtr0082982	3	1	1	82	3R	10392940	10392960	GACTTATCCAAGGCTAAGGAG		59	10392720	10392899	TTCACTACCTGATAATTGGGAC		59	NA	
Drosophila melanogaster	50	CG9649	FBgn0038211	FBtr0082902	3	1	1	84	3R	10041784	10041802	TCCACGAACAGTACAATCC		59	10041651	10041737	TAATCGCCAATATCAACGTG		58	NA	
Drosophila melanogaster	50	primo-1	FBgn0040077	FBtr0091749,FBtr0091747	2	2	3	104	3R	9536371	9536453	TTTGTTTGGGCAACATCTG		59	9536285	9536303	CAATTGCTGCACTATCGAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG9611	FBgn0028487	FBtr0082846,FBtr0112939,FBtr0082847	2	3	5	158	3R	9522676	9522694	AAGACTCTGCACGATAGAG		58	9522056	9522556	TCGTAGTTTGTATCTATCCGG		58	NA	
Drosophila melanogaster	50	sqd	FBgn0086897	FBtr0082857	3	1	4	80	3R	9470130	9470148	GAGGATATGCAACCCTCTC		59	9468919	9470087	GACAAACAGTTTCCATCAGC		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG9759	FBgn0038160	FBtr0082861,FBtr0082862	3	2	2	73	3R	9434792	9434810	TCTGGCGGATGTAAATCAG		59	9434737	9434755	CGAATCCAAATTGTCTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsc70-2	FBgn0001217	FBtr0082707	2	1	1	60	3R	8871642	8871660	GAGGATCATCAATGAGCCC		59	8871681	8871702	CTTAAGATTCTTATCCAGCCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12267	FBgn0038057	FBtr0082635	3	1	1	80	3R	8287891	8287967	TCGCAGAGATTGTTGAGAC		59	8288010	8288029	TTGACAAGGTCTTTATGCGA		59	NA	
Drosophila melanogaster	50	dpr17	FBgn0051361	FBtr0082543,FBtr0082542	1	2	2	99	3R	7936143	7936161	GATTAGCGATAGTGACGAG		57	7936224	7936318	AATTAATGAGCCGATCGTG		57	NA	
Drosophila melanogaster	50	CG31368	FBgn0051368	FBtr0082477	2	1	2	81	3R	7717449	7717470	TATATGTATTTGGCAGGGTCTC		59	7717510	7717598	CTCAACTTCAAAGGTCTAAGC		58	NA	
Drosophila melanogaster	50	CG6834	FBgn0037935	FBtr0082438	3	1	1	84	3R	7511673	7511743	AACTGAAAGATCACACTTCC		57	7511608	7511627	TTAACGTCCGTAAAGTTGTC		58	NA	
Drosophila melanogaster	50	Ranbp9	FBgn0037894	FBtr0082386	1	1	1	86	3R	7239747	7239823	TTCTCCTGGCTATTAACGA		57	7239873	7239891	CATCAGCCACACTAAAGTG		58	NA	
Drosophila melanogaster	50	CG6689	FBgn0037877	FBtr0082368	1	1	1	154	3R	7045009	7045087	TAAGTGGTGTCTGGATCAG		58	7044873	7044891	CTGCACTTCATCAGTTGAG		58	NA	
Drosophila melanogaster	50	CG18577	FBgn0037870	FBtr0082341	3	1	1	73	3R	7022480	7022498	CAGAGCGTTTAAACGAACC		59	7022533	7022553	GAAATTCGATGGCCTATAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14694	FBgn0037845	FBtr0082298	2	1	1	111	3R	6684643	6684661	GATACAATGGAGCTTGTGG		58	6684496	6684568	ATTCCAGGCTATTGTTGGT		58	NA	
Drosophila melanogaster	50	fau	FBgn0020439	FBtr0082308	1	1	4	63	3R	6599527	6599545	TACAACTACAGCACAGAGC		59	6599482	6599500	AAGAATAGCTGTAGCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp12e1	FBgn0037817	FBtr0082249	1	1	2	105	3R	6261643	6261661	TGGTTTGGAAACTAGCCTG		59	6261730	6261806	TACAAGAGTAGGATCCGCT		59	NA	
Drosophila melanogaster	50	CG18545	FBgn0037812	FBtr0082234	2	1	1	71	3R	6167232	6167251	CTACGTAGCTAGTGTTTGGA		58	6167285	6167303	GTTGTTTCAACTGCAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Best1	FBgn0040238	FBtr0082183,FBtr0114590	3	2	2	80	3R	5991953	5992985	CAAATTGCTGCTCAGATGG		59	5991891	5991912	GCATAGTAAATGGTCAAGAAGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG9471	FBgn0037749	FBtr0113211	3	1	2	171	3R	5597068	5597087	CAACGCATTGCTATTATTGG		57	5596861	5596879	CATCCTCGTAGTTGGTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9471	FBgn0037749	FBtr0082160,FBtr0113211	1	2	2	79	3R	5597058	5597076	TATTATTGGAGGAACCGGC		59	5596942	5596960	ATAGCAATTTCACCGACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-47	FBgn0024833	FBtr0082114	1	1	1	60	3R	5384672	5384693	CTTTGTGGAATACTTCAAGGAG		58	5384633	5384652	GATGATCACGAAATTGTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16736	FBgn0037668	FBtr0081985	2	1	1	60	3R	5082688	5082708	TAGCGATCTCATAACTATGGC		59	5082648	5082667	CACTGGTGTCATAATGACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Prosbeta3	FBgn0026380	FBtr0082010	1	1	1	108	3R	4831658	4831676	AAGAAGGTGTTCCACATCG		59	4831568	4831586	TCTCGTACAGATTCTTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31100	FBgn0051100	FBtr0082011	3	1	1	139	3R	4825366	4825775	TTGCTATTCGGATATGGCA		58	4825245	4825264	AGGTTAATGGAACTGAACCA		58	NA	
Drosophila melanogaster	50	CG11967	FBgn0037646	FBtr0081958	1	1	1	86	3R	4807813	4807831	TAATAGTTTGCGGACACAG		57	4807881	4807970	GTCGGTTAAGCTTAGAAGC		58	NA	
Drosophila melanogaster	50	CG34135	FBgn0083971	FBtr0110905,FBtr0110904	1	2	2	60	3R	4576502	4576520	GTGATGTATTTACTGGCGG		58	4576394	4576415	GCTTGAAGTGAATGATCATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11760	FBgn0037615	FBtr0081907	1	1	2	62	3R	4545212	4545230	GACATACTCTAGCCCTGGA		59	4545256	4545274	ATCGGATCGTCTCAAAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9773	FBgn0037609	FBtr0081953	1	1	1	141	3R	4501233	4501307	CTGGGATACAATTGCATTCC		58	4501111	4501132	CGCGATACTTGTAGAAATTGAC		59	NA	
Drosophila melanogaster	50	Obp85a	FBgn0037589	FBtr0081849	1	1	1	232	3R	4246001	4246019	GGAAATTCAACTTTGCCGA		58	4245730	4245748	GAGAGTGAATCGTCTTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	grn	FBgn0001138	FBtr0081808	3	1	1	222	3R	3993196	3993214	CTCTACCTCACTAACGGAC		58	3986730	3986748	TTTGTAGTACAGGCCACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14463	FBgn0037535	FBtr0081783	2	1	1	119	3R	3826194	3826212	AGGACATAGTGCTAAACGA		57	3826375	3826455	GGGATTGACTATTGAATAGGG		57	NA	
Drosophila melanogaster	50	CG1939	FBgn0037469	FBtr0081638	3	1	1	61	3R	2908467	2908486	CAAGATCGTCTGTGTAACCT		59	2908581	2908599	CATTGCGGGCTATTAATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31367	FBgn0051367	FBtr0081736	2	1	1	83	3R	2187747	2187767	CATCTCAAAGAGATTCAGGAC		58	2187591	2187609	AATAGTGTTCCTCTCCTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Rm62	FBgn0003261	FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653	1	6	6	154	3R	1829622	1829746	GAGGAGAAATTGAAGACCCT		59	1829487	1829505	TTGTCACCGTGAATAGCTC		59	NA	
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078675,FBtr0078672	1	2	5	165	3R	1586675	1587377	ATTCGGACATCAAATCGTG		58	1586472	1586490	GATGACATCTACCTTGCAG		57	NA	
Drosophila melanogaster	50	CG12746	FBgn0037341	FBtr0078690,FBtr0078692,FBtr0078689,FBtr0078691	3	4	4	80	3R	1392052	1392070	AAACTCTAATGCGAAGCTC		57	1392114	1392200	GTCTCCAACTTGAAGAAGG		57	NA	
Drosophila melanogaster	50	CG12746	FBgn0037341	FBtr0078690,FBtr0078692,FBtr0078689,FBtr0078691	2	4	4	80	3R	1392051	1392070	GAAACTCTAATGCGAAGCTC		59	1392113	1392199	TCTCCAACTTGAAGAAGGT		58	NA	
Drosophila melanogaster	50	Pi4KIIalpha	FBgn0037339	FBtr0078756,FBtr0078757	2	2	3	187	3R	1388607	1388695	AAAGTTGAGATCAACACCG		57	1388438	1388456	TTCTGAATAACAGCATCGC		58	NA	
Drosophila melanogaster	50	CG2519	FBgn0037336	FBtr0078761,FBtr0078762	1	2	2	80	3R	1369138	1369157	TCACGTCTAATCGAGTTGTG		59	1369007	1369096	TCCAATAAAGCCCGTATCTG		59	NA	
Drosophila melanogaster	50	CG14668	FBgn0037320	FBtr0078801	3	1	1	64	3R	1212581	1212599	AAACCGATTAGTGTCGGTC		59	1212535	1212553	AAACGTCAGAAGAACTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hph	FBgn0086689	FBtr0078782,FBtr0078781,FBtr0078780	2	3	3	112	3R	1092742	1092850	TCTGACCAATCAGATTGACTC		59	1092985	1093003	GATAACAAGCGACCATTGC		59	NA	
Drosophila melanogaster	50	CG9780	FBgn0037230	FBtr0078959,FBtr0078960	1	2	2	60	3R	118913	118932	GATCGATGAGATCTCTAGGC		58	118872	118892	CGTAGTGTGCATTATGTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897	2	5	15	193	3R	110111	120843	AATTAAGTGCCGTTAAAGGC		59	120999	121298	GATGTTGTACTTATCGCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG12582	FBgn0037215	FBtr0111225,FBtr0078964	1	2	2	100	3R	24403	24421	GTCAATGGTTCGTACTGGA		59	24483	24560	AATAGCTCGACAGCATATAGG		59	NA	
Drosophila melanogaster	50	CG40294	FBgn0058294	FBtr0111150	3	1	1	73	3L	23573503	23573521	TTTCACAGTAAGGAGAGCA		58	23573448	23573467	AAATCTTCTGACGGTTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SPoCk	FBgn0052451	FBtr0078532	2	1	4	166	3L	22768457	22770214	TTCATTGAGGAACAGACGG		59	22770344	22770362	TTATGCCCGATGATCTTGG		59	NA	
Drosophila melanogaster	50	CG11437	FBgn0037165	FBtr0078505	3	1	1	63	3L	22462717	22462735	CACTTAACAGATGTGGCAG		58	22462762	22462780	ATACTGTTGCAAAGAAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eg	FBgn0000560	FBtr0078437,FBtr0078438	2	2	2	98	3L	21807935	21807953	ATTTACATGTGAAGGCTGC		58	21809436	21809454	TTGTTGATCACGCAATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10586	FBgn0037036	FBtr0078335	1	1	1	60	3L	20948990	20949008	ATTGTGTCCTTTGGGATCG		59	20948948	20948967	GAACATCCGTATAGACACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Six4	FBgn0027364	FBtr0078274,FBtr0078275	2	2	2	127	3L	20783262	20783280	GTTCAAGAATCGTCGACAG		58	20782189	20782207	CGGGATAATAGCTTGGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17147	FBgn0036954	FBtr0074824	2	1	1	61	3L	20217879	20217898	ACTATGAGTGTGACAAGACC		59	20217922	20217940	CTTCTTGGAGGTGACAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fat2	FBgn0036930	FBtr0074906,FBtr0100509	1	2	2	80	3L	20008038	20008056	CGCTATTGAACTGTTACGA		57	20008099	20008174	TTTCCCATATCACTAACCGT		58	NA	
Drosophila melanogaster	50	Paps	FBgn0020389	FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885	1	6	6	93	3L	19853427	19853509	TAGACAGCATGGAGATCCT		59	19853566	19853584	AACTCATCCTTCCTCTTGG		58	NA	
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075007	1	1	11	126	3L	19300103	19300121	CACAAATGTGACATTGGCC		59	19299933	19299951	ATCCAGATGAGTGTCATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9629	FBgn0036857	FBtr0075017	3	1	1	61	3L	19260249	19260267	TGTGTACATCCTCAAAGCC		59	19260206	19260224	GTTCCACCTCATTGTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nes	FBgn0026630	FBtr0075021,FBtr0075020,FBtr0075019	3	3	3	87	3L	19251647	19251665	ATACATGGTTGTGAGCACC		59	19251405	19251423	CGAGTTGTTCAGAATGTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18135	FBgn0036837	FBtr0075044,FBtr0075043,FBtr0075042,FBtr0075045	3	4	4	61	3L	18984759	18984777	CAGACATGATCGAGTTGGA		59	18984716	18984734	ATCGTGATAAATCACAGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6843	FBgn0036827	FBtr0075067	1	1	1	64	3L	18895059	18895077	AATTTGCACGAGAACAAGG		58	18895105	18895123	ATGAAATTGACGCTCAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7320	FBgn0036782	FBtr0075128	1	1	1	60	3L	18196236	18196256	CGTTCCTGACTGTGATATACC		59	18196277	18196296	TTAAACTCCTTCGATTCCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14353	FBgn0036771	FBtr0075144	3	1	1	60	3L	17902345	17902364	GAGGGTCATTGATGACTCTG		59	17902387	17902405	AAGCATATTAAGGGCTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6333	FBgn0036731	FBtr0075224	1	1	1	60	3L	17473855	17473873	GACTCAGAAGATGTCCTCC		58	17473813	17473831	ACCGACAGTTTGTAGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3764	FBgn0036684	FBtr0075297	2	1	1	80	3L	16988830	16988848	ATGTCTCAGCTAGTGTCCA		59	16988707	16988786	CGACAAACACTCATAGGCT		59	NA	
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	1	8	8	118	3L	16956803	16956821	AAGACCCATTGAAGGTAGC		59	16956901	16956979	CAATAGACCCTTGTGAATCAC		58	NA	
Drosophila melanogaster	50	Lmpt	FBgn0036672	FBtr0089452,FBtr0089457,FBtr0089456,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459,FBtr0089455	1	8	8	80	3L	16914082	16914100	GGAGCAGGAGATCTATTGC		59	16914143	16914290	GAGGTGATGACCTTATTGCA		59	NA	
Drosophila melanogaster	50	CG13032	FBgn0036652	FBtr0075316	3	1	1	102	3L	16669016	16669034	CACAAATACGCTGAATTCG		57	16669158	16669176	CTTCTCTGTCAGCATTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4098	FBgn0036648	FBtr0075361	1	1	1	87	3L	16602284	16602302	GAGTTTCGAGTTTGCACTG		59	16602215	16602233	CAGCGATGACATCATTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tra	FBgn0003741	FBtr0075364,FBtr0100244	2	2	2	137	3L	16583384	16583459	ATTTCTACGGGATGTCTGG		58	16583265	16583283	CGTTTCTGTAGCCAAATCG		59	NA	
Drosophila melanogaster	50	pHCl	FBgn0036542	FBtr0100037,FBtr0100036	1	2	4	84	3L	15853122	15857082	CTAGATCGATGATAGGCGTG		59	15853057	15853075	TTAGAAACAACCGGCAGAG		59	NA	
Drosophila melanogaster	50	CG7372	FBgn0036522	FBtr0075570	2	1	1	60	3L	15614490	15614509	TAATACAGAATCCGTGGCTC		59	15614531	15614550	TTCATCGATTGTCAACTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12304	FBgn0036515	FBtr0075565,FBtr0075566	1	2	2	127	3L	15577530	15577748	ATTAAAGGAGGTGCCACTG		59	15577839	15577857	AGTGCGTAAAGGTCTTGAC		59	NA	
Drosophila melanogaster	50	gnu	FBgn0001120	FBtr0075697	1	1	1	60	3L	14795841	14795860	AAGATTAAAGTGGAGGACCC		59	14795800	14795819	GCTTATAGCGTGAATGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7768	FBgn0036415	FBtr0075736,FBtr0075737	3	2	2	60	3L	14211495	14211514	CGCGTTTACTTCGATATAGC		58	14211534	14211555	GTAGTTCCATCACAATTCTACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34017	FBgn0054017	FBtr0100072	3	1	1	60	3L	12815436	12815456	TCATCCGACTATGATTTGACC		59	12815476	12815496	CTCCTTCCGAATCATATTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32103	FBgn0052103	FBtr0075983,FBtr0075982,FBtr0075984	2	3	3	147	3L	12398217	12398235	ACGTACCTGATGACTTCAC		59	12398023	12398106	CTTTGTGTTTGTACCTGCA		58	NA	
Drosophila melanogaster	50	CG32100	FBgn0052100	FBtr0076006	2	1	1	60	3L	12261192	12261210	CACTAGATGACCACGAGAC		59	12261234	12261252	TCGAGATACGATACTTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6910	FBgn0036262	FBtr0076002	2	1	1	227	3L	12179993	12180011	CATCTATCAGCCCAATTGC		58	12180201	12180281	TCATAGCGATTGAAGATCAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG11658	FBgn0036196	FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127	1	5	5	86	3L	11694639	11694657	AACAAGGGTATTGCCAGTC		59	11694509	11694589	GCTGTCATTTACATGCGAG		59	NA	
Drosophila melanogaster	50	CG11658	FBgn0036196	FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127	3	5	5	186	3L	11694739	11694757	TAATGGTCTCAGTGAGGCT		59	11694509	11694589	GCTGTCATTTACATGCGAG		59	NA	
Drosophila melanogaster	50	Sgs3	FBgn0003373	FBtr0076096	1	1	1	125	3L	11505497	11505515	AACTACAACTACTTGTGCG		57	11505604	11505622	TTAGATGTCGTGCATGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sgs8	FBgn0003378	FBtr0076160	2	1	1	77	3L	11502214	11502235	ATCTGATCAACATTATGGAGGG		59	11502158	11502176	TCTAGAACAGCCAAACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12289	FBgn0036160	FBtr0076178,FBtr0076179	1	2	2	60	3L	11451067	11451085	CCACAATTGTCCAAGATCG		58	11451025	11451044	AATGACTTGTCGCAATACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NijA	FBgn0036101	FBtr0089569,FBtr0089570,FBtr0089571	2	3	3	149	3L	10687816	10688132	ATATTCCAGATTGCTGTGGG		59	10687686	10687707	GGCTGATATTAGAACATTGACC		58	NA	
Drosophila melanogaster	50	Ilp3	FBgn0044050	FBtr0076373	3	1	1	60	3L	9794874	9794892	CTTCAATCAGATCGATGGC		58	9794832	9794853	ACTATCACTCAACAGTCTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323	3	4	11	114	3L	9774996	9775719	ACCTGGGTAATTTGTCTGG		59	9775795	9775815	TACATATCGTCCTTCATGTCG		59	NA	
Drosophila melanogaster	50	Hsp22	FBgn0001223	FBtr0100558	2	1	2	62	3L	9366372	9366390	AATCGAGTCTTGGAAGCAG		59	9366416	9366502	GTAGATCACCACATTGCTG		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG4476	FBgn0035969	FBtr0076429	1	1	1	60	3L	9207843	9207861	GGTCAGGAATTTCCATTGG		58	9207948	9207968	CAATAATACAGCCCGATACAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tequila	FBgn0023479	FBtr0076526,FBtr0076525,FBtr0076528	1	3	4	100	3L	9082961	9082979	AAAGATGAGGCTAACTGCC		59	9083042	9083131	CATTGACCATTAGCCTTGAC		58	NA	
Drosophila melanogaster	50	Argk	FBgn0000116	FBtr0112791	1	1	6	107	3L	9043448	9057571	GAAATACGCAAACAAGACAC		57	9043360	9043378	GTACTTCTTCAACAGCGAC		58	NA	Nonspecific
Drosophila melanogaster	50	Doc2	FBgn0035956	FBtr0076547,FBtr0100367	1	2	2	63	3L	9007823	9007841	GTTGACCAATAACACGCTG		59	9007700	9007718	CTGATACTTGTGCATGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13310	FBgn0035928	FBtr0076590	3	1	1	123	3L	8792967	8792985	ATGTTCTCGATAGCTCCTC		58	8792659	8792881	CAATGTACATGTGATCTCCC		58	NA	
Drosophila melanogaster	50	CG32022	FBgn0052022	FBtr0076597	1	1	1	60	3L	8713834	8713852	CGTAAAGTATCAGAGGCGG		59	8713792	8713810	GCATGAAGTTCTCCATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13670	FBgn0035873	FBtr0076708	1	1	1	61	3L	8314921	8314939	GTGTGGTTAAATACACGGC		59	8314964	8314982	ACCATTGGTAATGACCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mthl7	FBgn0035847	FBtr0076726,FBtr0076727	3	2	2	109	3L	8172115	8172135	CTGACAGCCATTTACATTAGG		58	8171963	8172044	AACTGTAGGTAAGTCTGGC		58	NA	
Drosophila melanogaster	50	CG7409	FBgn0035817	FBtr0076810	3	1	1	60	3L	7747733	7747751	GGAAGCGATCACTATCTCG		59	7747775	7747793	TTTCCGACAATTACCCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bj1	FBgn0002638	FBtr0077076,FBtr0077075,FBtr0077074	1	3	3	196	3L	5924798	5924816	ATTTGGTCATCCTGACCAC		59	5924561	5924579	GAATGTGCAGTAGTTGGTG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Tektin-C	FBgn0035638	FBtr0077115,FBtr0113147	3	2	2	106	3L	5788690	5788708	GAAGCTCAAGGAGTTCCAG		59	5788197	5788215	CCAGATTCTCGTACGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Msr-110	FBgn0015766	FBtr0077133,FBtr0077132,FBtr0077131	3	3	3	231	3L	5561016	5561034	CATTCAGCGTTTGATCCTG		59	5560675	5560694	TGTTACTTAAACGGAACGAG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Dhc64C	FBgn0010349	FBtr0073360	1	1	2	98	3L	4813392	4813410	AACCGTCAAGATCGAAGAG		59	4813074	4813330	TTAATCGAGCTAACGGCTG		59	NA	
Drosophila melanogaster	50	CG32245	FBgn0052245	FBtr0073311	2	1	3	80	3L	4564538	4577926	TACGTAGACTTGATACACAAGC		59	4578774	4578792	ATGTTGATGCCTTATCGCT		59	NA	
Drosophila melanogaster	50	CG32242	FBgn0052242	FBtr0073326	2	1	1	75	3L	4503563	4503581	ATAGTGAACACTGGTCAGC		59	4503439	4503457	AGTAGGAACAACTCTCGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11345	FBgn0035546	FBtr0073334	3	1	1	64	3L	4457732	4457750	TGATTAAGGTCAACCCACC		59	4457686	4457704	ATTGACCTTGACAACTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14997	FBgn0035515	FBtr0073226,FBtr0073225	1	2	2	84	3L	4241426	4241503	CTTTAGGAAGATGGGTCGTC		59	4241550	4241568	TGCGTAATGCTTAACACCA		59	NA	
Drosophila melanogaster	50	Chd64	FBgn0035499	FBtr0073270	3	1	1	203	3L	4115429	4115447	AGTGCATGGAGAACATCTC		59	4115082	4115101	AGTTCCTCACATTCTTGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12006	FBgn0035464	FBtr0073150,FBtr0073149	3	2	2	84	3L	3812980	3812998	GAATACAGAGATGAACGCG		58	3813043	3813127	GGTGAATGTGACTATAGTATGG		57	NA	
Drosophila melanogaster	50	CG32284	FBgn0052284	FBtr0073037	3	1	1	84	3L	3186885	3186967	TCCAACTTGTAGAACCTACG		59	3187014	3187032	GTACTGGTTCACTTTGCAG		58	NA	
Drosophila melanogaster	50	CG12734	FBgn0035411	FBtr0073036	1	1	2	157	3L	3183716	3183734	TAATAGCAATGAGGAGCCA		58	3183988	3184260	GCTTCAAGAGTTTCTGAGC		58	NA	
Drosophila melanogaster	50	CG14955	FBgn0035399	FBtr0073123,FBtr0073122	2	2	2	83	3L	3113326	3113344	GAGTGCCAAGATTTCTACC		57	3113163	3113282	GCTGTCTATTACTTCACTATCG		58	NA	
Drosophila melanogaster	50	CG33234	FBgn0053234	FBtr0113457	3	1	2	133	3L	2662835	2662999	ATATGGATGCTGAGATGCC		59	2663094	2663114	CCTATAATTACCCAACGACGA		59	NA	
Drosophila melanogaster	50	CG7995	FBgn0035266	FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767	3	5	5	158	3L	1743700	1743718	CCATCTCCACGTACTTCTC		59	1743909	1743927	TTACATCCGTGATGTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7971	FBgn0035253	FBtr0113123,FBtr0072807,FBtr0072806,FBtr0100219	2	4	5	179	3L	1661261	1661279	GATCATGTCTCCAAGACGG		59	1659864	1659882	CTTTCGGACATTCTTCGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Psa	FBgn0035226	FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697	3	6	6	120	3L	1520660	1520678	CTACCGTGAGACCTTTGTG		59	1520761	1521150	CATAGTTACCAGATTGCCGA		59	NA	
Drosophila melanogaster	50	Ptp61F	FBgn0003138	FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718	1	4	4	143	3L	1346059	1346077	GAAACAGATCAAGTGCCAC		59	1345856	1345953	TCGGTTAATTTGAACCATCG		58	NA	
Drosophila melanogaster	50	CG9184	FBgn0035208	FBtr0072726	3	1	2	184	3L	1322443	1322551	GAAGACCATTGAGGATCAG		57	1322277	1322295	TGTAGCCATTGTAGTAGGG		58	NA	
Drosophila melanogaster	50	CG12038	FBgn0035179	FBtr0072619,FBtr0072620	3	2	2	170	3L	994902	994980	CATAATGCAGTATCTGGCCT		59	995113	995131	GCACTCTGGTACTTCAGTC		59	NA	
Drosophila melanogaster	50	Kaz1-ORFB	FBgn0063923	FBtr0100851	3	1	6	186	3L	216933	216952	ACTACATCCACTTGTATCGT		58	217100	217229	TACACGCATTATGTTCAGGA		59	NA	InUTR
Drosophila melanogaster	50	CR41440	FBgn0084049	FBtr0111304	2	1	1	85	2R	619123	619141	AGAAGTGCTTCTTTCTGAC		57	619190	619208	GATGAACTCCTTCTCTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR30449	FBgn0050449	FBtr0086333	3	1	1	61	2R	15616792	15616811	TATTGTCTAGTGGTTAGGCT		57	15616835	15616853	ATACAGGGAACTGAACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13588	FBgn0035038	FBtr0072319	1	1	1	125	2R	20496803	20496882	ACAACCCGAATAAGAATGAC		57	20496968	20496988	CGTCATCTAGAATGCTAATGG		58	NA	
Drosophila melanogaster	50	CG4681	FBgn0069913	FBtr0072341	2	1	1	74	2R	20466831	20466849	CGATATGAGTCTGCTGACC		59	20466775	20466793	AATTTGGAAAGATTGCGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ori	FBgn0035025	FBtr0072308	1	1	1	80	2R	20454948	20455019	GATCCCAGAAGTCAGTTCTC		59	20455061	20455080	ATTACTGGTCGGAGTTATGG		58	NA	
Drosophila melanogaster	50	CG3394	FBgn0034999	FBtr0072268,FBtr0072269	1	2	2	246	2R	20184732	20184750	ACGTCTTCTTTAACTCGGG		59	20185258	20185276	TAATCCATGTCCACCTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3363	FBgn0034987	FBtr0072260	1	1	1	132	2R	20078139	20078157	AAGGACACGGATAAGTCAG		58	20078253	20078331	AAGGTTTGTTAGCATCTGC		58	NA	
Drosophila melanogaster	50	Unc-89	FBgn0053519	FBtr0091464,FBtr0113464	1	2	2	80	2R	19885415	19885497	GAGAGTCATTACCAATACGGA		59	19885355	19885373	ATACTCTCGCAATCTCACC		58	NA	
Drosophila melanogaster	50	wibg	FBgn0034918	FBtr0072233	3	1	1	223	2R	19744002	19744023	ACATCAACTCGATATCCAAGAC		59	19743800	19743818	CTCCAAGTCCTTGATCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13545	FBgn0034828	FBtr0071972	2	1	1	256	2R	19045543	19045618	AGCTTTGGCCCTATTAATCC		59	19045306	19045324	TAGGATGAGGAGTAGACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11206	FBgn0034720	FBtr0071846,FBtr0113106,FBtr0071847	3	3	4	146	2R	18222380	18222458	GAAAGGATCTCAGAGCTCC		59	18222252	18222271	ATGGTTGCGTATATTCCTCC		59	NA	
Drosophila melanogaster	50	Vrp1	FBgn0034695	FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104	3	7	7	89	2R	17998431	17998841	CAACCTAAATATCTCGTTAGGC		58	17998363	17998383	GTTAGACTGCTGTTTAAGGAC		58	NA	
Drosophila melanogaster	50	CG9304	FBgn0034674	FBtr0071726	1	1	1	105	2R	17862241	17862312	TACATCTGGGATAGGACGG		59	17862444	17862463	ACCACATCATAAAGGAGGTG		59	NA	
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708	1	9	9	89	2R	17398741	17398920	CCAGAGGATTACGTCTATCC		58	17398972	17398990	ACCAATCACCGACTTTAGG		59	NA	
Drosophila melanogaster	50	CG4050	FBgn0020312	FBtr0071637,FBtr0071638	1	2	2	60	2R	17012577	17012595	TATCAGCATGAGGAGTGAC		58	17012475	17012493	CTTCATAAGAATGTCGCCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9346	FBgn0034572	FBtr0071526	1	1	1	80	2R	16900820	16900841	AGAGGACAAAGAGAATATGGAG		59	16900942	16901029	TTAAGAACAGCCTTCTCTGTG		59	NA	
Drosophila melanogaster	50	insc	FBgn0011674	FBtr0071562	3	1	1	96	2R	16710766	16710784	CCACTACTCCATCATGTCC		59	16710259	16710708	GATTTGCTCGTAGAGAAAGAC		58	NA	
Drosophila melanogaster	50	insc	FBgn0011674	FBtr0071562	1	1	1	92	2R	16710762	16710780	TACTCCATCATGTCCAACG		59	16710259	16710708	GATTTGCTCGTAGAGAAAGAC		58	NA	
Drosophila melanogaster	50	CG10444	FBgn0034494	FBtr0086305	2	1	1	60	2R	16160167	16160187	CGACTACTTCTGGTTATATCG		57	16160127	16160145	AATAAGAAAGCCGATGACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	plu	FBgn0003114	FBtr0086306	3	1	1	151	2R	16150788	16150806	AATCTGTCCTCGATGATCC		58	16150601	16150619	TTAATCATTCCTCGCAGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15120	FBgn0034454	FBtr0086463	1	1	1	65	2R	15387273	15387291	GCAATTAATATTGCCGCTG		57	15387430	15387448	AATGTCGTGCACATTACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15093	FBgn0034390	FBtr0086640,FBtr0086639	3	2	3	72	2R	14664066	14664084	CAAGAACTCGGACTTTGTG		58	14664012	14664030	AGTCATCTCATCGTAGGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5174	FBgn0034345	FBtr0086684,FBtr0086689	2	2	7	99	2R	14312452	14312470	CATTTCGTCGAAACTGTCG		59	14312533	14313480	GGAACTCAACGCTTTAACG		59	NA	
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	1	8	8	97	2R	14032395	14032483	AGGAAAGAATTCTGAGAAGC		57	14032543	14032561	CAATCATCGGATACAGACG		57	NA	
Drosophila melanogaster	50	Hsf	FBgn0001222	FBtr0110964,FBtr0086782	2	2	4	81	2R	14018836	14018854	AGTTGGAAACACTGAAGGA		58	14018537	14018791	GAGTCGTTAAACAGACCCA		59	NA	
Drosophila melanogaster	50	CG14487	FBgn0034272	FBtr0086865	1	1	1	60	2R	13632113	13632132	TCAACCATATTCGACAAGGA		58	13632155	13632173	CGGGCATAACAGTAAGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9001	FBgn0034175	FBtr0087060	3	1	1	60	2R	12887578	12887596	ACATTTCTGGGATGATCCA		58	12887536	12887554	GTCCAGAACCAAGAAAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hmgs	FBgn0010611	FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146	1	5	5	60	2R	12227687	12227705	CAGCAGAAGGATACTTCCA		58	12227727	12227747	GGAATAGGATAGCATCGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33017	FBgn0053017	FBtr0087135	3	1	1	60	2R	12163545	12163565	CAGGAACGCTAATCATAACAG		58	12163586	12163605	GTCGCAAATACAATCATCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rho1	FBgn0014020	FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216	3	7	7	83	2R	11993292	11993372	ACACAATTCGGGATCTAGC		59	11993419	11993437	AGGCATTAATCTTCTCGGC		59	NA	
Drosophila melanogaster	50	ATPCL	FBgn0020236	FBtr0087266,FBtr0087265	3	2	2	85	2R	11881893	11881976	CATTTACCAGTGAGGAAGC		58	11881826	11881844	AATAAATCCTATGCTGCGG		57	NA	
Drosophila melanogaster	50	l(2)k05713	FBgn0022160	FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309	1	4	4	83	2R	11747749	11747767	GAACTTCCTCGAGATCCAC		59	11747609	11747702	ACTGCTCTAGATCTAGGCC		59	NA	
Drosophila melanogaster	50	CG30088	FBgn0050088	FBtr0087280	3	1	1	60	2R	11579170	11579188	CTGGCCAATGATATTGCTC		58	11579211	11579291	GTATGTGCACATTAAAGCGA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG33467	FBgn0053467	FBtr0089861	1	1	1	145	2R	10943596	10943614	ATTTACCAAGGTCGAGTGC		59	10943413	10943487	CTTGCACTCGAATTGTTGG		59	NA	
Drosophila melanogaster	50	shot	FBgn0013733	FBtr0087619,FBtr0087617,FBtr0087616,FBtr0087618	1	4	6	80	2R	9804409	9804427	GAGGATATTGTGGATGGCA		59	9792995	9804367	AATATCGGAGATCTGGAAGTG		59	NA	
Drosophila melanogaster	50	CG4716	FBgn0033820	FBtr0087747,FBtr0087746	3	2	2	61	2R	9144352	9144373	CCATATTATCAAACGATCTGCC		59	9144393	9144413	CTTTGTCATTATGCTCCTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AQP	FBgn0033807	FBtr0087766	3	1	1	295	2R	9100790	9100808	CTTCAAGGAGATGGCTCTG		59	9100453	9100531	AGTTAAAGGCGTAAACTGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG30486	FBgn0050486	FBtr0087817	1	1	1	163	2R	8735945	8735963	TGGATGATGTTAAGGGCTG		59	8735749	8735767	GTACTGATAGAGTCCGCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087832,FBtr0087836	1	2	8	102	2R	8505631	8505712	TTCCTGAATACGATGGTCC		58	8505778	8505796	GAATAGCATTGACGTTCGG		58	NA	
Drosophila melanogaster	50	Sin3A	FBgn0022764	FBtr0087887,FBtr0087889,FBtr0087890,FBtr0087888	2	4	4	91	2R	8467292	8467310	CAACATGGACTCGAATACG		58	8467117	8467237	TGGAGACAACCTTATCCAG		58	NA	
Drosophila melanogaster	50	vis	FBgn0033748	FBtr0087944	1	1	2	137	2R	8396496	8397090	CAGTGTCATCTACAGGTCC		59	8396318	8396336	TCCTCAGTCCCAAATACAG		58	NA	Nonspecific
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930	3	5	6	106	2R	8335508	8335527	TATCATAACCTCAACAAGCG		57	8335595	8335676	GAGTTATCACTTGTGTACGC		58	NA	
Drosophila melanogaster	50	Cyp6g2	FBgn0033696	FBtr0088009	3	1	1	60	2R	8077496	8077517	ATCCCAGAACATATTCTTCCTG		59	8077457	8077475	CGATAGCTTCAAACGTACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ix	FBgn0001276	FBtr0088154	2	1	1	60	2R	7247102	7247120	CACTTACTTGAACACGGTC		58	7247060	7247079	CAGAGTGTCGTGTATATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7220	FBgn0033544	FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217	3	5	5	110	2R	6624695	6624713	CCATGTTGAGTAGTTGTCG		58	6624787	6624870	CAGAATCATCGTGGTACCA		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089342,FBtr0089349	2	2	26	187	2R	6419759	6419778	TTGAGGATTTGACACTGGAC		59	6408769	6419548	GTCGTACTTCAGGTCTTGG		59	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	2	9	9	198	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349188	6349206	CTTAGTACAGTCCACAGCC		59	NA	
Drosophila melanogaster	50	Pka-R2	FBgn0022382	FBtr0088438,FBtr0088437,FBtr0088439	3	3	5	219	2R	5885777	5885795	CGAACGCATCATCAAACAG		59	5884113	5885213	CTTGACATCGAGGAATGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Prosalpha7	FBgn0023175	FBtr0089997,FBtr0089998	2	2	2	80	2R	5734626	5734644	AGACTGAGATGGAGAAGCT		59	5734397	5734585	GGACTTTGTAGATGATTTCACC		59	NA	
Drosophila melanogaster	50	CG1623	FBgn0033448	FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487	2	4	4	70	2R	5716116	5716134	TGAACTACGAACCCAAGAC		59	5716064	5716082	ATCCGGATACTTGTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Wnt2	FBgn0004360	FBtr0088512	2	1	1	281	2R	5389081	5389483	GTCATACCCACAGCTTCTC		59	5389726	5389746	GTTATTGTGCAGGTTCATCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Pkn	FBgn0020621	FBtr0112897,FBtr0088602,FBtr0088604	1	3	6	98	2R	5144983	5145002	GTATCTGTATCGTGGTAGCA		58	5143204	5144922	TGTGGTATAACCTCCACAC		58	NA	
Drosophila melanogaster	50	gcl	FBgn0005695	FBtr0088710	2	1	1	92	2R	4615200	4615218	ATTATACCCAAGGAGTGGC		58	4615274	4615362	CTGAGGACTACAATCCTCC		58	NA	
Drosophila melanogaster	50	CG34218	FBgn0085247	FBtr0112411	2	1	1	73	2R	4250072	4250090	TAGTCTGCCTAAGAAGTCG		58	4250017	4250038	GTTAATAGCAGTCTCGATACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pnut	FBgn0013726	FBtr0088793,FBtr0088792	1	2	2	60	2R	4126449	4126470	GGTGCATCTATTTAAGAAGCAG		59	4126489	4126509	GTAGATCTTGATCTTGTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8709	FBgn0033269	FBtr0088815	2	1	2	200	2R	4026691	4026709	TTAAGATCGCCTGTCTGTC		59	4026084	4026447	GATTGATGTAGCCAGAGGA		58	NA	
Drosophila melanogaster	50	CG12821	FBgn0040780	FBtr0113332,FBtr0113331	1	2	2	83	2R	3721687	3721705	TAGTGTGGAGTACCATGTG		58	3721751	3721827	AGACTTCCATCTGATCTGTG		58	NA	
Drosophila melanogaster	50	CG1399	FBgn0033212	FBtr0088940,FBtr0088939	3	2	2	123	2R	3565905	3566090	GGTCTAAACAGAATGGAACTC		58	3565802	3565822	AGCTGACTGATACACTATTGG		59	NA	
Drosophila melanogaster	50	dpld	FBgn0015930	FBtr0088985,FBtr0088987,FBtr0088986	2	3	3	142	2R	3371482	3371500	TAGTGTTCGACAACCATGG		59	3371296	3371378	GGAAAGAATGTCGTTGATGTC		59	NA	
Drosophila melanogaster	50	CG1707	FBgn0033162	FBtr0089013	1	1	1	142	2R	3283096	3283114	TTCTCGCTGTACTTTCTGG		59	3281431	3281449	TAATTCTGATCCGGATCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	cos	FBgn0000352	FBtr0089015	1	1	1	85	2R	3273115	3273133	AACTTTGGCCTACAATTCG		58	3272992	3273066	TTGGAGTCTATCAGCTTGG		58	NA	
Drosophila melanogaster	50	Tsp42El	FBgn0033134	FBtr0089032	2	1	1	111	2R	2935583	2935601	CTGAATCTATATGTGCGCG		58	2935676	2935758	GAATGACAGCGTTGAATCC		59	NA	
Drosophila melanogaster	50	CG7849	FBgn0033060	FBtr0085977,FBtr0085976	1	2	2	60	2R	1965401	1965421	GATGTGACAGATAGTCTGCTC		59	1965441	1965461	GGAGGTTCTTGATAATTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)09851	FBgn0022288	FBtr0086043	2	1	1	60	2R	1642399	1642418	GATGACGGCTTATATTGTGG		58	1642440	1642459	AATAAGGTTGTTGACATGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17510	FBgn0039969	FBtr0086073,FBtr0086074	1	2	2	99	2R	1491755	1491773	AAATGATCAAGTTCGCTCC		58	1491443	1491461	AAGTACTAAAGCTGCTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10395	FBgn0033019	FBtr0086087,FBtr0086088	1	2	2	60	2R	1238958	1238976	AGTCTTTACAACAGCCCTC		59	1239000	1239018	TAGTTGCCAGTTACAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Atf6	FBgn0033010	FBtr0086081,FBtr0086080,FBtr0086079	2	3	3	60	2R	1040784	1040805	ACTCATATAATGAACCTCCACC		59	1040823	1040844	CACCTGTTTATACAGTTTCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-2263	FBgn0082990	FBtr0113537	3	1	1	61	2L	5187846	5187864	AACGATTATTGGATGCTGG		57	5187888	5187907	TATGGAGTGATGCGATTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17494	FBgn0040011	FBtr0111253,FBtr0111252	2	2	3	109	2L	22473765	22473783	GCATGATCACTGAAGACCA		59	22473854	22476862	CTTTACAATCTCGTTTCGCAG		59	NA	
Drosophila melanogaster	50	Tsp39D	FBgn0032943	FBtr0081515	2	1	1	88	2L	21356673	21356795	GGGTATACAGGAGCTACGA		59	21356847	21356865	CTTGTGAAGCATGGTATGC		59	NA	
Drosophila melanogaster	50	crc	FBgn0000370	FBtr0081512,FBtr0081513	1	2	3	83	2L	21318350	21318369	ATTCGATGCTTACAAACAGG		58	21318415	21318498	GGAGTATAGCATTGCACCT		59	NA	
Drosophila melanogaster	50	CG9249	FBgn0032922	FBtr0081500	2	1	1	153	2L	21158425	21158443	AATTCGACTAGAAGCAGCA		58	21158230	21158311	TGATAAAGGGAACCCTAATCTC		59	NA	
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445	3	8	8	80	2L	20877196	20877215	TCTGCAAGAAGATACCAGTG		59	20877070	20877156	AAATATACTGGGTACTCAGTCC		58	NA	
Drosophila melanogaster	50	CG14402	FBgn0032894	FBtr0081425	1	1	1	60	2L	20849883	20849903	CTGTACCGGTAAATTGTACAG		58	20849925	20849943	GAAGAACTTACTCAGTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10195	FBgn0032787	FBtr0081286	1	1	1	122	2L	19483516	19483534	CGTATCAATCCCTGTTGGA		59	19483348	19483430	CATAGAAGTCATCGCCAGG		59	NA	
Drosophila melanogaster	50	dnt	FBgn0024245	FBtr0081224	2	1	1	107	2L	19339846	19339864	CAAATTGTGATGATGGCCT		58	19339639	19339775	CTGATCGTCAATAACGCAG		58	NA	
Drosophila melanogaster	50	CG10176	FBgn0032682	FBtr0081067	3	1	1	60	2L	18486908	18486928	CACAATCACAGATCTACAGTG		58	18487031	18487050	GTTGTCATAGTCACAACGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017	1	6	12	101	2L	17651479	17652674	TCTGATACTACTCGTCTTGGT		59	17651398	17651416	TTGATGATATTCTCGCGCA		59	NA	
Drosophila melanogaster	50	CG34170	FBgn0085199	FBtr0112361	1	1	1	61	2L	17311721	17311742	CGTTAAGGATAAGCTGAATCTG		58	17311681	17311699	ATCCATCCCGGTATACCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31818	FBgn0051818	FBtr0080841	2	1	1	60	2L	16338322	16338340	CCCAAAGTCTACTACGACC		59	16338280	16338301	ATCTTGGCTTAGGATTTAGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gli	FBgn0001987	FBtr0080769,FBtr0080765,FBtr0080768,FBtr0080767	2	4	5	83	2L	15760332	15760410	GGATTACAGAACCTACACGT		59	15760268	15760286	TTTCTGCCTGGATAGTTGG		59	NA	
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0080711,FBtr0100613,FBtr0080712	3	3	7	107	2L	15261795	15261813	ATCTACGACGAATCCTCGA		59	15261626	15261725	CGTATCGCATTCAATTTCCA		58	NA	Nonspecific
Drosophila melanogaster	50	elB	FBgn0004858	FBtr0080637	3	1	3	221	2L	14391934	14392242	TATTATCCACCCGGTTACG		58	14391731	14391749	GTTTATGTAGTGCGGACTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG16863	FBgn0028931	FBtr0110942	1	1	2	124	2L	13791568	13791586	TTCATGCTGTACCATTTGC		58	13791743	13791761	CACAATCTGCAATGACTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15638	FBgn0028943	FBtr0080516	2	1	1	139	2L	13535729	13535747	GATTATAATCCACCGCCCA		59	13535608	13535626	CAATTGGAGGTTCCTTTGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090029	3	2	17	196	2L	12726933	12726951	TATATCAAGAGCGTTGGCA		58	12727110	12736605	ATATAGCTGAAGACTTGGCC		59	NA	
Drosophila melanogaster	50	PICK1	FBgn0032447	FBtr0080396,FBtr0080395	1	2	2	97	2L	12696297	12696316	CATTACAAAGGATCAGAGCA		57	12696376	12697481	GTGTTCCATCGAAGATCTG		57	NA	
Drosophila melanogaster	50	bun	FBgn0010460	FBtr0111003	2	1	6	189	2L	12477159	12498535	GATTTCATCGGTGCATCTG		58	12458097	12458115	TGTTCGACTTGAGAATGCT		59	NA	
Drosophila melanogaster	50	CG31860	FBgn0051860	FBtr0080340	2	1	1	60	2L	12166227	12166245	CTCATGGTTCTGATGGAGG		59	12166269	12166287	ATGTCTGTTTCACCTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31760	FBgn0051760	FBtr0080338	3	1	1	96	2L	12167033	12167124	AGCAGAAGTGATCTTAGATCAG		59	12167181	12167199	CAGGAAGAACACTTCTCCG		59	NA	
Drosophila melanogaster	50	CG14914	FBgn0032334	FBtr0113036,FBtr0080192	1	2	2	109	2L	11068922	11068940	CAAGTGCAATCTATGGCAG		58	11069013	11069031	TTGATTGCTGTTTGACCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dnz1	FBgn0027453	FBtr0080181	3	1	1	110	2L	10855451	10855666	CCAGTTGCGAATGATTCAC		59	10855359	10855377	GTCTCGTCGTACAGAATCG		59	NA	
Drosophila melanogaster	50	Cdk5alpha	FBgn0027491	FBtr0080063	2	1	1	61	2L	10308564	10308582	TTGGTTGAAGACTCGAAGG		59	10308449	10308469	CTTAGCTTGTTCACAATGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nckx30C	FBgn0028704	FBtr0079926,FBtr0079928,FBtr0079927	1	3	3	118	2L	9733529	9742390	CAACGTGGTATCAATGACAC		59	9733430	9733448	ATGATGTGCAGGATGACAG		59	NA	
Drosophila melanogaster	50	Trx-2	FBgn0040070	FBtr0079839	1	1	2	100	2L	9613532	9615311	AAAGATAAGGCCGATCTCG		59	9615375	9615393	GAGATCATCTTGCAGGGTC		59	NA	
Drosophila melanogaster	50	Sema-1a	FBgn0011259	FBtr0110930,FBtr0079691	3	2	3	96	2L	8660491	8660509	CCTCTGTAGTCATCGAGGA		59	8660568	8660660	TCTTTGGGTTGATCGTACTG		59	NA	
Drosophila melanogaster	50	lectin-29Ca	FBgn0040098	FBtr0079715	3	1	1	60	2L	8394093	8394112	CTGGTTTACCTACAATTCGC		58	8394052	8394073	CTCCATATTACCAATTCTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Uro	FBgn0003961	FBtr0079486	1	1	1	60	2L	7780868	7780888	CAGTATGATCGCATCTTTAGC		58	7780910	7780928	TCTCGGTATCGGAGTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31904	FBgn0051904	FBtr0079502,FBtr0079501	3	2	2	284	2L	7735484	7735566	ATTTAAAGGCATTGGCTACG		58	7735106	7735124	GTGTAGGACAGTCCATGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5973	FBgn0031914	FBtr0079446,FBtr0079448,FBtr0079447	1	3	3	102	2L	7444552	7444571	TGAAAGCAGTTCACATAGTG		58	7444636	7444719	TGGAAGAAGATCCTCTTGC		58	NA	
Drosophila melanogaster	50	CG31909	FBgn0051909	FBtr0079406	1	1	1	91	2L	7257998	7258016	AGAAATCGTAGAGAACCCA		57	7258071	7258089	AAGCGTCTACTTCATCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nrv2	FBgn0015777	FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382	1	5	5	84	2L	6791573	6791591	TTTGATCTGGTACAAGGGC		59	6791313	6791525	TACTTTGTACACCGCAAGG		59	NA	
Drosophila melanogaster	50	CG34179	FBgn0085208	FBtr0112372	3	1	1	87	2L	6048627	6048647	CGAAATGTCGTACTTACTCAC		58	6048560	6048578	ATTGGTCAGGTGGAATGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12511	FBgn0031729	FBtr0079113	1	1	1	60	2L	5678959	5678977	CTCAAGACATTCTCACAGC		58	5679001	5679019	TTTCTCTGACCTCTAGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vri	FBgn0016076	FBtr0079070,FBtr0079071	1	2	2	91	2L	5307901	5308027	AGGCTTCTAACTTGCATCC		59	5308082	5308100	ATATTTGCCCAGACTGTCG		59	NA	
Drosophila melanogaster	50	pgant5	FBgn0031681	FBtr0079026,FBtr0111024	3	2	2	114	2L	5077708	5077787	CTCAACTTCCGATGGTACC		59	5077612	5077632	CCTTATCGATGGAGAACAGAC		59	NA	
Drosophila melanogaster	50	betaggt-I	FBgn0015000	FBtr0078991	2	1	1	102	2L	4945960	4945979	GCTCCGATTCCTTAATCTCC		59	4946101	4946119	TGAGTTTAGCACATCCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3008	FBgn0031643	FBtr0077389	3	1	1	128	2L	4884221	4884239	TGATAACAAAGCACGATCC		57	4884328	4884400	GGTTAAACACCTTATTGGAGAG		58	NA	
Drosophila melanogaster	50	bowl	FBgn0004893	FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493	2	4	4	81	2L	3780517	3780537	GCCCTATTCCTGTGATATCTG		59	3780577	3781922	CTCCTTGGAGTGAATATACCTG		59	NA	
Drosophila melanogaster	50	dpp	FBgn0000490	FBtr0077774,FBtr0077772,FBtr0077775,FBtr0077771,FBtr0077773	1	5	5	60	2L	2458369	2458387	GACCACTTTAACTCGACCA		59	2458410	2458429	CGGGATTCATATTGTTGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34447	FBgn0085476	FBtr0112751	1	1	1	103	2L	2419491	2419561	CTGTACTCGAATTCCACCC		59	2419406	2419427	CCATGGATGAGTATCTTTAGGG		59	NA	
Drosophila melanogaster	50	CG31670	FBgn0031375	FBtr0077870	3	1	1	113	2L	1951165	1951183	CACCTCACGATTATCCCAG		59	1951070	1951088	CTATGAAGGTCTCCGAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4749	FBgn0031308	FBtr0077959	1	1	1	60	2L	1147944	1147963	ACAAGAAGAACAACTGTGAC		58	1147985	1148004	TAGACACTTCCGTAGAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	drongo	FBgn0020304	FBtr0078035,FBtr0078036,FBtr0078037	3	3	3	121	2L	836547	836565	TCCCATCTACAATGCAGTG		59	835446	835464	CGTCGAGATCCTTAAGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pkg21D	FBgn0000442	FBtr0078042	1	1	1	107	2L	788167	788249	GATTTCAGTGATAAGCAGCA		58	788079	788100	CTTGGAGTACATTGAATCTACC		58	NA	
Drosophila melanogaster	50	RpLP1	FBgn0002593	FBtr0078056	3	1	1	260	2L	420301	420319	ATCAACACCATCCTGAAGG		59	420542	420561	GATTTAGTCGAACAGACCGA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG33992	FBgn0045202	FBtr0100045	1	1	1	60	2L	327806	327824	AATACATGGAGTGCAAGGA		58	327764	327784	TGGATTGGATCACACTTATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3345	FBgn0031240	FBtr0078127	1	1	1	107	2L	270510	270528	TTTAAACGACGATCTCAGC		57	270598	270671	TGATAAGCTTTGTAGTGCAC		58	NA	
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	2	7	8	166	2L	119224	119295	TAATGCAGACTGATGTCCTG		59	119020	119038	TTGAGCCATGGTGTTTAGG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-1854b	FBgn0083041	FBtr0113569	2	1	1	62	X	17039685	17039703	GATCCTTACAGGGTTGTGG		59	17039641	17039661	AGAGGAATAGCTAATCATGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0269	FBgn0029067	FBtr0077226	3	1	1	81	X	21192724	21192742	ATACTACAGACAGCACTGC		59	21192538	21192682	TATCCTATTTAGGTCACTGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32521	FBgn0052521	FBtr0077234,FBtr0077235	1	2	3	79	X	21077234	21077252	TACGATAACAACGGTGGTG		59	21077173	21077193	GGATTCGAGAAGAAATTGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1702	FBgn0031117	FBtr0077310	2	1	1	130	X	20340468	20340547	GTGAAATCGAACAGACACG		59	20340641	20340659	TTTGTAGACGAACTCGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Obp19c	FBgn0031111	FBtr0077327	2	1	2	68	X	20289469	20289487	GATCAAGTTGGTGAGTAGC		57	20289419	20289440	CGAATGAGAAGTATTAGTGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fu	FBgn0001079	FBtr0074602	1	1	1	139	X	18554036	18554054	TGTTCCTCAACTTCCTCAC		59	18554225	18554243	AATCCGTTCTACAAGCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074573,FBtr0074575,FBtr0074574,FBtr0074571,FBtr0074570	3	5	6	81	X	18286507	18286593	GTTCATCAAACATCACCAGG		59	18286445	18286463	ATTCAGGACATAGACACGC		59	NA	
Drosophila melanogaster	50	nonA	FBgn0004227	FBtr0100586	3	1	3	144	X	16259516	16259534	AATAGCAATTCGCCATTCG		58	16259713	16259733	CCACAGATCTATTGGTTACTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Gbeta13F	FBgn0001105	FBtr0074109,FBtr0074106,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107	2	6	6	60	X	15755481	15755499	GCTCATTATCCGACTAAGC		57	15755523	15755614	CTCTTGTTAGATGGTGGCT		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG8959	FBgn0030691	FBtr0074192	3	1	1	146	X	15677083	15677102	CGTCAGTATCATATCACCGA		58	15676900	15676918	TAAATTACCAGATCGCGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17209	FBgn0030687	FBtr0112987	1	1	1	90	X	15659001	15659019	AAGTGCGTCTCAATATGGT		58	15659070	15659165	GAGTTTCGTATATGAATCCAGG		58	NA	
Drosophila melanogaster	50	CG15031	FBgn0030623	FBtr0074023	2	1	1	60	X	15138406	15138424	AAAGGTATCGAGTTTCGTC		57	15138364	15138384	GAGTGTATATTGTTCGGTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14414	FBgn0030571	FBtr0073931,FBtr0073930,FBtr0073932	3	3	3	295	X	14475629	14475647	CAATGCGCTACTGAAACTG		59	14475980	14475998	CGCGATCCTTGTTAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11158	FBgn0030511	FBtr0073812	2	1	1	63	X	13577219	13577294	GATGTTCCGGTCTTTAGGG		59	13577320	13577339	AGTTGGTATACTCCCAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	comt	FBgn0000346	FBtr0073754	2	1	1	111	X	13153746	13153837	GAAGAAGACTGTCTCCCAG		58	13153909	13153930	GAAATTGAAGACCAGTGATTGG		59	NA	
Drosophila melanogaster	50	CG15734	FBgn0030374	FBtr0110815,FBtr0073636	1	2	2	72	X	11980917	11980935	CACACCTATCAAGTTTGGC		58	11980783	11980884	ACTTATCGGGCGAATAATAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp311a1	FBgn0030367	FBtr0073640,FBtr0073639	1	2	2	107	X	11924493	11924511	CAAATTCGAGGGTCAATCG		58	11924351	11924369	TATAGCACAAACGACATGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Usp7	FBgn0030366	FBtr0073641	2	1	1	93	X	11919084	11919159	CTACACATTTAAGGGCACCA		59	11919010	11919028	GATGCTAAGCGATAGTCGT		59	NA	
Drosophila melanogaster	50	CkIIbeta	FBgn0000259	FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559	1	5	6	162	X	11689033	11689147	TGTTCCAAGGCTATATGGA		57	11689687	11689705	TTGTATTCGTGCGTATGTG		58	NA	InUTR
Drosophila melanogaster	50	CG32700	FBgn0052700	FBtr0071374,FBtr0071373	3	2	2	171	X	9404563	9404581	GATGGTGATGACTTGGAGG		59	9404410	9404428	TAATTTGAAGCGATGGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mxc	FBgn0005639	FBtr0071312	3	1	1	81	X	9138109	9138127	GGAATTCTACTTCGGTGAC		57	9138170	9138250	CAATGGTACATATGGATCCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fh	FBgn0030092	FBtr0071348	2	1	1	107	X	9042493	9042511	ATCTACAAGCACAGTGGTC		59	9042404	9042422	TTAACTACAGTAGGGCAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	e(r)	FBgn0011586	FBtr0071266,FBtr0071267	1	2	2	60	X	8799183	8799201	GTTTACCAGAAGAGCACCA		59	8799141	8799160	TCTTCTCCTTGATCCAATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spirit	FBgn0030051	FBtr0071231,FBtr0071230	3	2	2	87	X	8466541	8466559	GAGGTTCGACCACTATGTG		59	8466321	8466340	CTTGTTCAGTTCATTGCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Upf2	FBgn0029992	FBtr0071117	2	1	1	60	X	7966165	7966186	TGAAATAAGCGAGATAGACGAG		59	7966062	7966080	CTGATCATTCGATGACCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14436	FBgn0029902	FBtr0070977	2	1	1	127	X	6694188	6694206	GATGATGCGATGGATTTGG		59	6693857	6694097	AGTTTCATACTGGTGGCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdk7	FBgn0015617	FBtr0070756	3	1	1	130	X	5202772	5202862	GTTTGCCACAGTTTACAAGG		59	5202661	5202680	ATATCTTGATCTCACGCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4313	FBgn0025632	FBtr0070327,FBtr0100659	3	2	2	62	X	1947160	1947178	TGCTTTAATCTGCCATTGG		58	1947204	1947222	CAGATCACTATGGGTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11398	FBgn0040366	FBtr0070250	3	1	1	60	X	1108285	1108307	CATCTCTTCGTCCATAGTATCTG		59	1108247	1108265	TATAATCTGCTCCGCAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3713	FBgn0040343	FBtr0070195	2	1	1	64	X	740980	740999	ACTGACCTTTGAACTCATCC		59	740935	740953	CTTCGAAGCTATCATCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Suv4-20	FBgn0025639	FBtr0070151	2	1	1	106	X	547480	547499	CTACGATATAGCCATCCAGC		59	547262	547411	ATCGGACGATATGATCGTG		59	NA	
Drosophila melanogaster	50	CR41604	FBgn0085814	FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269	3	4	4	104	U	3449415	3449487	TTTCTGAAGCAAAGTCCCA		59	3449555	3449573	CTTGATACTGATCTCCCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG40188	FBgn0058188	FBtr0113821	1	1	2	60	U	2233302	2233323	GTGTACCTCTTAAACTTTCCTC		58	2235793	2235812	TAATCGAACGAATCAAGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41327	FBgn0085617	FBtr0114061	3	1	1	129	U	1165947	1165966	AATACATCCTAGTCGGACAC		58	1166058	1166076	TTAATTCTTGAGGTCCCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40189	FBgn0058189	FBtr0113823	3	1	1	121	U	40282	40300	TACAAAGGAAGGTTGATCG		57	40994	41728	ATGATATCTTTCGAGTGCG		57	NA	
Drosophila melanogaster	50	CG2003	FBgn0039886	FBtr0085870,FBtr0085871	2	2	2	64	3R	27815036	27815111	GAGATTCCTAAGACGGTGC		59	27815139	27815157	CCATAGAAGAGCAGACCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1910	FBgn0022349	FBtr0085839,FBtr0085840,FBtr0085838,FBtr0085841	2	4	4	87	3R	27576299	27576375	AATGTAAATGGTGAGCCCA		59	27576425	27576444	TGGGATTGGTTTAGTTACAC		57	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	Med	FBgn0011655	FBtr0085815,FBtr0085816	3	2	2	85	3R	27440094	27440113	CTATTATCTGGATCGCGAGG		59	27440160	27440235	GGTCAAACACCTTTATGCAC		59	NA	
Drosophila melanogaster	50	CG15537	FBgn0039770	FBtr0113310	1	1	1	114	3R	26268921	26268939	TTCTCCATGATTGTGCTGG		59	26262230	26264029	CATGCATGCAATCTGAGAC		59	NA	Nonspecific
Drosophila melanogaster	50	Ptp99A	FBgn0004369	FBtr0100523,FBtr0085423,FBtr0085424,FBtr0085422,FBtr0110981	1	5	5	80	3R	25300558	25301994	GGAGTCAAGGATTATACAACTG		58	25302034	25302053	AGGTTGTAGTCATTATGCGA		58	NA	
Drosophila melanogaster	50	Gr98b	FBgn0046887	FBtr0085186	3	1	1	136	3R	23369226	23369302	CATAAATGCGTACAACTGCT		58	23369401	23369419	ATGTGAAACGCAACTTCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5468	FBgn0039434	FBtr0085029	1	1	1	288	3R	22445557	22445575	GATATTGGAGATCTGGCCA		58	22445827	22445845	TGAAACGAGCGACTTAGAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG5455	FBgn0039430	FBtr0085016,FBtr0085017,FBtr0085015	1	3	3	82	3R	22293798	22293874	CGATGATAGCGACTATGCT		59	22293920	22293938	AAGTGGGAAAGCTGTACTC		59	NA	
Drosophila melanogaster	50	CG33970	FBgn0053970	FBtr0100013,FBtr0100012	2	2	2	103	3R	22182066	22182084	AACAATTCTGTCCAGTGCA		59	22182151	22186297	GGTCACATATTGCACAACC		59	NA	
Drosophila melanogaster	50	CG5127	FBgn0039335	FBtr0084835	2	1	1	106	3R	21299358	21299379	CATACTATGTAGCATACCTGGA		58	21299446	21299521	GTATGCCCTTCAACTTCAG		58	NA	
Drosophila melanogaster	50	CG13659	FBgn0039319	FBtr0084828	1	1	1	111	3R	21127672	21127691	CCATCCTCCTAGAGACTCTC		59	21127765	21127843	CTCAGCAGTAGAAACTCGT		59	NA	
Drosophila melanogaster	50	CG33096	FBgn0053096	FBtr0114464	2	1	1	113	3R	20924090	20924108	CTTTGGGTACGACTACTCC		59	20924183	20924267	CTGATGTTGAATCTGGTTCTC		58	NA	
Drosophila melanogaster	50	veli	FBgn0039269	FBtr0084787	1	1	2	91	3R	20890640	20890658	AATAATACCTGGAGGCGTG		59	20890503	20890585	TTTCTCCTTCGACAGACAC		59	NA	
Drosophila melanogaster	50	CG31381	FBgn0043799	FBtr0084711	3	1	1	60	3R	20703256	20703274	ACATCATCTACTGGACGTG		58	20703297	20703316	GTTACGAAAGTGAGTGACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31142	FBgn0047114	FBtr0084492	1	1	1	119	3R	19755134	19755254	GATAAGCTATGCAGATGGC		58	19755337	19755355	TAGAAGGCACTCAGTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7077	FBgn0038946	FBtr0084205	1	1	1	188	3R	18181542	18181681	AATTAACGAGCATTTGCCC		59	18181833	18181851	AAATTCAATCGACCTTCCG		58	NA	InUTR
Drosophila melanogaster	50	CG6637	FBgn0038908	FBtr0084135	1	1	1	79	3R	17691668	17691749	TGATCAAGGATTTGGGCTG		59	17691792	17691810	AATCCAACAGAGACCTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16791	FBgn0038881	FBtr0084095	2	1	1	131	3R	17147621	17147639	GAATAGACGTGATGTTCCC		57	17147132	17147526	CAGGAGTACTCCTCTTCAC		58	NA	
Drosophila melanogaster	50	CG31195	FBgn0051195	FBtr0083997	2	1	1	87	3R	16585155	16585174	ATATGTGAAGAAGTGGCTGG		59	16584812	16585105	TACCACACCCTTGAATTCC		59	NA	
Drosophila melanogaster	50	Dys	FBgn0024242	FBtr0110918,FBtr0110917,FBtr0083766,FBtr0083764,FBtr0110916,FBtr0110919,FBtr0083765,FBtr0110915	3	8	8	162	3R	15416358	15416489	ACTATATCGACCACGAACG		58	15416680	15416698	ATGCTAATCCTGTCGAGAG		58	NA	
Drosophila melanogaster	50	CG14294	FBgn0038656	FBtr0083726	3	1	1	60	3R	14727710	14727728	GATTTCTACGTCAAGCTGG		58	14727668	14727687	CACTATCCAATACTTCACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpb4	FBgn0053520	FBtr0100273,FBtr0083604,FBtr0100275,FBtr0083603	1	4	5	65	3R	14080037	14080113	TACAACAATCGCCTCAGAG		59	14079990	14080008	CATTATGAGACCGTGTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	14-3-3epsilon	FBgn0020238	FBtr0083567,FBtr0083565,FBtr0083566,FBtr0083568	2	4	4	80	3R	14073560	14073579	ATATTGCCATGAACGATCTG		58	14073621	14073708	TCTCATAGTAGAACACCGAG		57	NA	
Drosophila melanogaster	50	CG5840	FBgn0038516	FBtr0083454,FBtr0083455	2	2	2	281	3R	13362216	13362235	GTATTCGTGATGATTGAGGC		58	13362551	13362569	CTACTTCGTCTTTCCCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14890	FBgn0038444	FBtr0083300	1	1	1	127	3R	12395401	12395980	AAAGGAGCCAATCATCTCG		59	12396071	12396089	TTTCATTATCCTCCGCCTG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Pak3	FBgn0044826	FBtr0083312	3	1	2	60	3R	12278002	12278020	CAAATCAAGCCCAAACCTC		59	12277960	12277979	CTCGACGTATATCCGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HtrA2	FBgn0038233	FBtr0082987	2	1	1	65	3R	10335968	10335986	AAGGTTATCGTTGGGTCAC		59	10335837	10335856	TATGTGGGTCACTATGTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Art6	FBgn0038189	FBtr0082878	2	1	1	107	3R	9771029	9771107	GAAATGCTCTGTATATGGAGG		57	9770942	9770961	TTAACCAGAGGTTTCCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14721	FBgn0037942	FBtr0082430	1	1	1	127	3R	7562049	7562067	GAAAGCACACGATACAGGT		59	7562156	7562235	CTGTGCATGATATAGGTTCCA		59	NA	
Drosophila melanogaster	50	CG31406	FBgn0051406	FBtr0082235	3	1	2	260	3R	6174718	6174736	AATCTTCGAGGACCAAAGG		59	6175447	6175521	TTGCATTATCGTTTGTCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dh	FBgn0012344	FBtr0082080,FBtr0112870	1	2	2	121	3R	5469413	5472752	ACTCACAGGATGACTTTCTG		59	5472836	5472854	GTTCTCCTTCATTTGCCTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG9396	FBgn0037714	FBtr0082111	1	1	1	84	3R	5397004	5397022	ATGGACTTATCAAGGCCTG		59	5396880	5396956	AATATGGTCTTGGGTCCTG		58	NA	
Drosophila melanogaster	50	alpha-Man-II	FBgn0011740	FBtr0082031	2	1	1	82	3R	5239049	5239068	AAATCTCCTACTTTGCTCGG		59	5239110	5239463	CTGTCCATTCTTTACAATGGAC		59	NA	
Drosophila melanogaster	50	CG9356	FBgn0037688	FBtr0082048,FBtr0082047	1	2	2	157	3R	5228688	5228706	TGTAATCAGCCTAAGTGCC		59	5228480	5228567	TAATGAATTCCAAGGCCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8043	FBgn0037610	FBtr0081902	1	1	1	63	3R	4503735	4503753	CAAGCATGGTATTGCACTG		59	4503780	4503798	GATCATCAACTCAGGACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11694	FBgn0037571	FBtr0081859	2	1	1	71	3R	4137734	4137752	GTTCTCAGATCATTCTGCG		58	4137681	4137699	TGATCCGACATTAGAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bcd	FBgn0000166	FBtr0081664	1	1	5	79	3R	2582671	2584835	CGATTTGATCTTGGAGCCT		59	2582610	2582628	TTATTCCGGTGCTCATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ccp84Ac	FBgn0004781	FBtr0081693	2	1	1	138	3R	2521638	2521656	ATCCCAAGTACAACTTCGC		59	2521518	2521536	TTTACAGTACGACGGAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15597	FBgn0037420	FBtr0078613	1	1	1	197	3R	2110901	2110919	AGTTCTACTTGTGCCTCTC		58	2110634	2110652	TTTAATGACCTTCACGGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	disp	FBgn0029088	FBtr0078665	3	1	1	137	3R	1677590	1677792	CTATATGAAGCGCAGATGC		58	1677471	1677492	GTGTCATACATGTTGGATATGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG41453	FBgn0084016	FBtr0111174	2	1	1	131	3L	23081059	23081080	GGTTGGAGAACAAGAATATGAG		58	23082203	23082222	AGAATAAGATTTCGATCGGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11523	FBgn0037156	FBtr0078511	1	1	1	60	3L	22259529	22259548	TTTGCATCTCATCCAAACTG		58	22259488	22259506	ATAGTCCGGATGTTCAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5976	FBgn0036999	FBtr0078200,FBtr0078199	2	2	2	68	3L	20468597	20468683	GATATCCTACAATCCCAGCG		59	20468713	20468732	AGCTTATCGGATAGATTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5976	FBgn0036999	FBtr0078199	1	1	2	60	3L	20467698	20467716	AATCTACAATCTAGGCGCT		58	20467737	20468679	GGGATTGTAGGATATCTTAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7290	FBgn0036949	FBtr0074858	1	1	1	71	3L	20198599	20198617	GAACAACTATCCATGCAGC		58	20198546	20198564	AGATTGCATAGGTTGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32192	FBgn0052192	FBtr0075146,FBtr0075147	3	2	2	230	3L	18033710	18033728	TGATATTGTACGCTTCGGA		58	18034086	18034105	GAGAATATCCAACTCTGCTC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG16775	FBgn0036767	FBtr0075156	1	1	1	60	3L	17879308	17879329	GTGATGAATCCATCTTTATCGG		58	17879269	17879287	TACTTGACGATGCACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Oatp74D	FBgn0036732	FBtr0075173	3	1	1	81	3L	17494564	17500728	ACGCCTAACAGAAATACAC		57	17500773	17500791	GGTAGATTGGTTGATCTGG		57	NA	InUTR
Drosophila melanogaster	50	CG33052	FBgn0053052	FBtr0075229	3	1	1	178	3L	17421027	17421045	CAAGCTGGAAAGTGATCTG		58	17420810	17420828	ATAGATGCTCTGTGAGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14059	FBgn0036690	FBtr0075289	1	1	1	191	3L	17023383	17023825	TCTGAATCGACTTGGATCC		58	17023210	17023228	GAGTGATCCCTCTTGAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5235	FBgn0036565	FBtr0075497	1	1	1	71	3L	16082903	16082922	CAATCCTGAAGTTTAAACGC		57	16082796	16082869	TAAACGTATCAGCGGAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13471	FBgn0036443	FBtr0075709	2	1	1	60	3L	14726057	14726075	ATCACGGAATTCATGGAGG		59	14726015	14726033	GTCTTTGAACTTCTTCGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10710	FBgn0036377	FBtr0075817	3	1	1	60	3L	13510213	13510233	GCAATTACCGGTATTACAACG		59	13510173	13510191	GAGATGAACTCGTAGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11253	FBgn0036338	FBtr0075894	1	1	1	101	3L	13018103	13018121	AGATACGGACCATACTTGC		58	13017963	13018038	TCCTTGAGCTGACAATCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11261	FBgn0036332	FBtr0075899	3	1	1	73	3L	13003079	13003097	CATGAACGATTTACGGAGC		58	13002952	13003042	TTTAATGCCTCTTGGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17826	FBgn0036227	FBtr0076042	3	1	1	60	3L	11942983	11943061	CCAGAACTAAACACTATGGAG		57	11943083	11943101	GACGATCCCATAAAGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	E(z)	FBgn0000629	FBtr0076279	1	1	1	81	3L	10630670	10630750	ATAAGAAACTGGGACGAGC		59	10630607	10630625	GATCGTAGGGTTTAGCCTG		59	NA	
Drosophila melanogaster	50	nbs	FBgn0086349	FBtr0076411	1	1	1	78	3L	9715362	9715380	TACAGTATGTGCCATCGTC		59	9715230	9715249	ATAATACGTCGACCATTCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	vsg	FBgn0045823	FBtr0076398,FBtr0076399	1	2	4	186	3L	9707709	9708850	ATTTGTGCGAAGAAGTGAC		58	9709000	9709018	GAAGTTGTGGTCTTCTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6761	FBgn0036031	FBtr0076414	3	1	1	173	3L	9694600	9694618	TGAGGATTCAGGAATTGGC		59	9694392	9694410	TTTGATAGCGAGATCCTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6694	FBgn0035900	FBtr0076656	2	1	1	99	3L	8501329	8501444	CATCTGTGTCAGCTTTCTG		58	8501248	8501266	CAAATAGTACCGACAGACG		57	NA	
Drosophila melanogaster	50	CG8012	FBgn0040832	FBtr0076699	3	1	1	208	3L	8208624	8208710	TCTTGATGTTCGCATTGTG		58	8208882	8208900	GTAGTATGGATACGTGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sec63	FBgn0035771	FBtr0076847	1	1	1	98	3L	7356782	7356800	CAATCTGGTCGAGAAGGAG		59	7356861	7356962	AAATACGAGTCCGATCTCAG		58	NA	
Drosophila melanogaster	50	Dbi	FBgn0010387	FBtr0076916,FBtr0076915	3	2	2	74	3L	7126426	7126444	TACATCACCTTTGTGGAGG		58	7126481	7126500	GGTTTAAGATCGCTAATTGC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Usp36	FBgn0035633	FBtr0077103,FBtr0077101,FBtr0077100	3	3	6	189	3L	5767102	5767120	CTGAAGCAATCGTATCGTG		58	5768385	5768403	CATTGTTTCCCTTAGCCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Txl	FBgn0035631	FBtr0077098	2	1	1	180	3L	5759699	5759717	CTTTGAAGTTCAAGGCACC		59	5759920	5759938	TTCTGGAACTTGACGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tie	FBgn0014073	FBtr0073323	2	1	1	131	3L	4512758	4512776	CAAACATATTGCCAGCCTC		59	4512583	4512663	CTCGATGAACAATCCTCCT		58	NA	
Drosophila melanogaster	50	Gr64f	FBgn0052255	FBtr0073201	1	1	1	111	3L	4037071	4037144	AAGCTTGAACACTATGCCA		59	4037219	4037237	ATCATGAACACTCGAGGAG		58	NA	
Drosophila melanogaster	50	CG1120	FBgn0035462	FBtr0073148	3	1	1	270	3L	3807923	3807944	GGATTTCAGTCAACTTATGCTG		59	3808231	3808249	CTTCAGCGACATATTCTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG16984	FBgn0062517	FBtr0072928	2	1	1	76	3L	2595971	2596045	AAATCCTGTTGTGGAGAGG		59	2596085	2596103	ATAGCTTCTTGTCCTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	E(bx)	FBgn0000541	FBtr0072522,FBtr0072523,FBtr0072521	1	3	3	86	3L	245466	245936	GAAGGAAAGGGTACGAGTC		59	245398	245419	GCATATCATCCTCATTATCGGA		59	NA	
Drosophila melanogaster	50	gol	FBgn0004919	FBtr0072460,FBtr0072459	2	2	2	137	2R	20963227	20964697	GAACATCAGTGCTGTTTGTG		59	20963053	20963071	TAACAGAGCAGAGATTGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Lcp9	FBgn0025578	FBtr0072430	3	1	1	64	2R	20667812	20667886	TTTGTGATCGTTCTTGCCT		59	20667766	20667784	TTTACAACATCAGCCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or59a	FBgn0026384	FBtr0072023	1	1	1	60	2R	19327792	19327868	CTAGAACTATTCCGACGCA		58	19327750	19327770	CTGTGAACTGAATTAGCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dnr1	FBgn0034738	FBtr0071837	2	1	1	60	2R	18452436	18452454	GGTGACCAATCAGTTTACC		58	18452394	18452413	ATTCTCCATGAACATGGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NtR	FBgn0029147	FBtr0071762	2	1	1	102	2R	18017105	18017124	GAGTTCCCTCATTCTCATCG		59	18017189	18017279	ATATGCAGTCATCATGGGC		59	NA	
Drosophila melanogaster	50	CG4363	FBgn0034663	FBtr0071740	2	1	1	95	2R	17722058	17722138	GATTCCAGCAAGGATTCCA		59	17721981	17722001	CACATAGCAATACGAGTTTGG		59	NA	
Drosophila melanogaster	50	CG4266	FBgn0034598	FBtr0071629,FBtr0113100	2	2	2	80	2R	17054330	17054404	CGTAATGAAGGGAAATGCTG		59	17054269	17054287	TCCTTGTTAAGGTCCATGC		59	NA	
Drosophila melanogaster	50	CG34201	FBgn0085230	FBtr0112394	2	1	1	60	2R	16638683	16638701	TGTCATATCAGAAGGTCGG		58	16638724	16638743	ACTCAAGGTATCACTTACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9945	FBgn0034527	FBtr0086225,FBtr0086226	2	2	2	237	2R	16506497	16506515	GGATTAGTGAGCAATCCGA		59	16506716	16506794	CAAAGCCATCTTGACAAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	prod	FBgn0014269	FBtr0086601	1	1	1	262	2R	14857641	14857660	AGGGAGCAAATTATCTACGA		58	14857332	14857350	TTGGGACACTATAAGGACG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	sano	FBgn0034408	FBtr0086567,FBtr0086569,FBtr0086566,FBtr0086568	2	4	4	271	2R	14844989	14845235	TCACATCAGGTACAAGAGTC		58	14845469	14845487	TATTGCTACTGGAACTCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG18604	FBgn0034378	FBtr0086606	1	1	1	60	2R	14591366	14591384	TCCAGTAATGTCACTGCAG		59	14591520	14591538	GATTGAAGGCATATCGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	sec6	FBgn0034367	FBtr0086709	2	1	1	93	2R	14513727	14513745	GTTGTGAAGTCCCTTTGTG		58	14513801	14513885	GATAGCTAGAAAGTCCTTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30116	FBgn0028496	FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718	3	4	4	80	2R	14363164	14363625	GGATTATCGCCTTATGAACG		58	14363103	14363121	GATTGAAAGGCTTGTTCCA		58	NA	
Drosophila melanogaster	50	CG30114	FBgn0050114	FBtr0086753	3	1	1	72	2R	14095517	14095536	AATAATATTCGCAACCGCTG		59	14095571	14095589	TAATCAGCAGACTGTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sub	FBgn0003545	FBtr0086881	3	1	1	66	2R	13633611	13633688	TTTATGCTTTCCTCTCAACG		58	13633564	13633584	CCTCTATCTCATCTTTGAGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30106	FBgn0050106	FBtr0086893	2	1	1	119	2R	13538599	13538673	AGTAACCTGAAGCATCTCG		59	13538498	13538516	GTAGTAGACCAGGAAGTGC		59	NA	
Drosophila melanogaster	50	CG18631	FBgn0034239	FBtr0086944	1	1	1	60	2R	13431029	13431047	AACTGGAACGAGAGTTTCC		59	13431436	13431454	GTGTACGCAAAGTTTAGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15701	FBgn0034095	FBtr0087131	2	1	1	156	2R	12120367	12120475	GTACAAGGAAGTTCAGTACG		57	12120594	12120612	ATAGCTCCTCAGATCACAG		57	NA	
Drosophila melanogaster	50	CG30090	FBgn0050090	FBtr0087279	1	1	1	80	2R	11577929	11577995	CTTTCAAAGCTCACATCTCG		59	11578035	11578056	CAAACCATTCTATGCTATCGAC		59	NA	
Drosophila melanogaster	50	CG12963	FBgn0034031	FBtr0113082,FBtr0087337,FBtr0113083,FBtr0087338	3	4	4	130	2R	11449472	11449490	ATGTGTAACCTGACCACTC		58	11449584	11449602	GAATGTGGATCTGTCTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17389	FBgn0033938	FBtr0087490	3	1	1	72	2R	10337029	10337294	TTACTCAGCAATCAACACC		57	10337330	10337348	TAGGAGGATACTCTGGTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17386	FBgn0033936	FBtr0087488	3	1	1	60	2R	10310292	10310310	TTCGCCTATATCTTCTGCT		57	10310334	10310352	ACTGCTTATACCAGACACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8617	FBgn0033925	FBtr0087561	2	1	1	67	2R	10243737	10243755	GATTTGAGCATCATGAGCG		59	10243688	10243707	ATCATTGAAGCTCATTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8589	FBgn0033921	FBtr0087562	1	1	1	80	2R	10189226	10189244	ATCGACTGTTATATCCCGT		57	10189095	10189182	GGGTTCTAAGGGTACTCTG		58	NA	
Drosophila melanogaster	50	CG13331	FBgn0033850	FBtr0087672,FBtr0087673	1	2	2	275	2R	9409608	9409821	AGAAGACCAGACTGAGAGG		59	9410060	9410078	GTTCCATGTTATAGGTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34312	FBgn0085341	FBtr0112510	2	1	1	69	2R	9097696	9097772	TCTGTTTGGGTGAAATCCA		59	9097645	9097664	CATAAACAATGCGAATTGCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG13321	FBgn0033787	FBtr0087792	3	1	1	154	2R	8841820	8841838	ACCAGTGTTTGTACATCCC		59	8842107	8842125	ATAGATCTGATCGCCATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3884	FBgn0033786	FBtr0087800	3	1	2	60	2R	8837217	8837235	CATCGAGCTTTGTTCATCG		59	8837175	8837196	AAATCTCATAGGAATCCAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17760	FBgn0033756	FBtr0110824	2	1	1	82	2R	8514600	8514619	TATTCATGGCCATACAGTCG		59	8514663	8514750	GGCAAGTTTACTATGCTCCT		59	NA	
Drosophila melanogaster	50	CG8979	FBgn0033669	FBtr0088053,FBtr0088051,FBtr0088052	1	3	3	123	2R	7855431	7855449	TGTATTCACGGGAAACTCG		59	7855269	7855344	ACTTGGAATGAAGGATCCG		59	NA	
Drosophila melanogaster	50	CG30026	FBgn0050026	FBtr0088143	2	1	1	62	2R	7296500	7296519	ATATCCGACTTACAGACCTC		58	7296457	7296475	GAAGAAACGGGAGGTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr47Ef	FBgn0033603	FBtr0088186,FBtr0088187	3	2	2	60	2R	7157762	7158245	AGTAAAGCTCTGGTGATCAC		59	7157721	7157739	ATTTGTTATCCAGCTTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34223	FBgn0085252	FBtr0112416	1	1	1	83	2R	7123448	7123526	ACCTCAAAGTTCAGTTCCA		58	7123572	7123591	GGTTGAAGACGACTAAAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	StIP	FBgn0033540	FBtr0088212	1	1	1	81	2R	6534913	6534991	TTCTGCTGGATTCTCTTCC		58	6535033	6535054	TCAGAATCTACCTTGTAGACAG		58	NA	
Drosophila melanogaster	50	Or46a	FBgn0026388	FBtr0088330	3	1	2	190	2R	6027757	6027867	GTGTTATCTGACGAGAGGC		59	6028077	6028095	ATAAAGAGGAGCGCAATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8080	FBgn0033373	FBtr0088633	1	1	1	171	2R	4978187	4978205	GTAGCAACGGCAATATTCC		58	4977977	4978052	TCGCCAATAAATACCTCGT		58	NA	
Drosophila melanogaster	50	CG12126	FBgn0033280	FBtr0088801	3	1	1	92	2R	4150528	4150548	CCTAAACCGAATCAAGAAGTC		58	4150456	4150474	AAACTGATCAAAGGCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11198	FBgn0033246	FBtr0113054,FBtr0088871,FBtr0113053,FBtr0088872	3	4	4	80	2R	3864340	3864358	TTGGAATTAAGGAGGACGT		58	3864216	3864296	CGGAGATGTATATCCTCGG		58	NA	
Drosophila melanogaster	50	CG12824	FBgn0033222	FBtr0113050	1	1	2	137	2R	3678003	3678082	GAATTATCCTACGCATTTGGAG		59	3678236	3678254	TAAGTAGAGGAACATGGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	boca	FBgn0004132	FBtr0088953	2	1	1	60	2R	3454055	3454074	AAGGATATACGCGACTACAG		58	3453852	3454033	CTTCCTCCCATTGATCTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fmo-2	FBgn0033079	FBtr0086148	3	1	1	102	2R	2531041	2531731	CAGATAAGTTTAAAGACGCGC		59	2530959	2530977	CTTAGGAAGACCTGCTTGG		59	NA	
Drosophila melanogaster	50	Src42A	FBgn0004603	FBtr0085968,FBtr0085967	3	2	2	82	2R	1896787	1896807	GATACGGTTAAGCATTATCGC		59	1896851	1896936	TGAAGGGTTCTGAATGTCG		59	NA	
Drosophila melanogaster	50	CG17337	FBgn0033035	FBtr0086038	3	1	1	95	2R	1586849	1586931	CTGAGTACAAGAAAGACATTGG		58	1586987	1587005	CAGAAAGACTGGGATAGCG		59	NA	
Drosophila melanogaster	50	CG8245	FBgn0033031	FBtr0086036	3	1	1	61	2R	1556880	1556901	GCACTGGTTATAACCATTACAC		59	1556922	1557002	AAGGCAGAAATTGATTCCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10395	FBgn0033019	FBtr0086087	3	1	2	110	2R	1238315	1238393	TGGTGAAAGAAGGTTCTAAGG		59	1238465	1238483	TTGAATTAGATGCAAGCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Uhg2	FBgn0063449	FBtr0079906	1	1	1	101	2L	9894336	9894354	GAGCACATGGATTTACCGA		59	9893864	9894075	AACGTCACTCTTATACAGTCG		59	NA	
Drosophila melanogaster	50	fs(2)ltoPP43	FBgn0004811	FBtr0081316	3	1	2	99	2L	19793389	19794590	TACTTAAGTGTGATTCCTGTGG		59	19793311	19793329	AGTAGTTCTCCTGGTTCGA		59	NA	
Drosophila melanogaster	50	CG10702	FBgn0032752	FBtr0081175,FBtr0081176,FBtr0081174	1	3	3	80	2L	19067507	19067579	AAGGACAAGTACGTCATGG		59	19067445	19067463	GGAAATAACATAGCCGTGC		58	NA	
Drosophila melanogaster	50	Fas3	FBgn0000636	FBtr0112804	2	1	4	204	2L	18384849	18384867	TACTGATTGTGTTTGCACG		58	18386298	18386316	TCCAATTTATCGGTTACGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31803	FBgn0051803	FBtr0081010	1	1	1	61	2L	17412280	17412298	CTATATTGGCAAGGGAGCC		59	17412181	17412255	GTCCAGCTTAACGTAGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ChLD3	FBgn0032598	FBtr0080892	3	1	1	221	2L	16741881	16741959	CATTTCTGAAATTCCTCGACG		59	16742142	16742160	AGAATCGATCCTCTTGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	fzy	FBgn0001086	FBtr0080833	1	1	1	91	2L	16311781	16311799	CACATCCGAGAGGATTCTG		59	16311907	16311925	CCACAGCCACTATATTGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG18478	FBgn0028517	FBtr0080757	1	1	1	74	2L	15670249	15670269	CTTGGACACTAATAGTAGCAC		57	15670304	15670423	GCTCTTCAATTTGTTGAAGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15269	FBgn0028878	FBtr0080704	2	1	1	60	2L	15109783	15109801	AACAGTATTAGGAGCCCAC		58	15109825	15109843	AGGCATAAGGAGTTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	elB	FBgn0004858	FBtr0080636	3	1	3	100	2L	14391196	14391323	TTATCATCCGTACGGATGG		58	14391114	14391134	GAGAAATGATGGGTTTGACTG		59	NA	
Drosophila melanogaster	50	CG33681	FBgn0053681	FBtr0091661	3	1	1	118	2L	14005803	14013475	GGTTCTGTTAACGATTACGAG		58	14013553	14013573	GTGAATAGAACAGCACATCTC		58	NA	
Drosophila melanogaster	50	RpL24	FBgn0032518	FBtr0080524	2	1	1	71	2L	13394263	13394281	TATCAAGCTTGGCTTACAG		57	13394210	13394229	TGATGATTCATGACGTACAC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG17036	FBgn0032449	FBtr0080408	3	1	1	60	2L	12699689	12699772	AAGTGATCTCCTACATCCAG		58	12699648	12699667	TAAACACTGAGCTTATTCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	giac	FBgn0032368	FBtr0080268	3	1	1	113	2L	11610828	11610846	CGTACTCAGAGCTACAGTG		59	11610674	11610751	TCCATATACTTCAACGCGA		58	NA	
Drosophila melanogaster	50	CG34162	FBgn0085191	FBtr0112353	1	1	1	135	2L	11532725	11532743	TAGCGGTGATGAGATTCTG		58	11532841	11532924	TGATGGTATCATTGCAATCC		58	NA	
Drosophila melanogaster	50	CG4705	FBgn0032339	FBtr0080195,FBtr0080196	1	2	2	93	2L	11092644	11092662	ACCCTATTTGTTCCTTCGT		58	11092716	11092792	GTGACCAGTTCTATTTCATTGG		59	NA	
Drosophila melanogaster	50	CG33300	FBgn0053300	FBtr0079904	1	1	1	60	2L	9902620	9902640	CCACGATTAAATCCACATCTG		59	9902580	9902600	GTCGATTTAATGGTCGTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9463	FBgn0032066	FBtr0079744	1	1	1	112	2L	8767704	8767725	TGGCTATTATCGCTCTAATCAC		59	8767556	8767634	GCTCATTGACATACTTGATCAG		59	NA	
Drosophila melanogaster	50	CG10806	FBgn0031865	FBtr0079374,FBtr0079373	3	2	2	83	2L	6862440	6862458	CGGTGGCTACCTAATATCG		59	6862304	6862394	CAGCCTACATTCTGGAAGAG		59	NA	
Drosophila melanogaster	50	CG31643	FBgn0051643	FBtr0079182	3	1	1	108	2L	6040765	6040784	CCTACGGCTACCAAATAGAC		59	6040855	6040932	ATTGCCACTTTGGTTATGC		58	NA	
Drosophila melanogaster	50	Traf1	FBgn0026319	FBtr0077429,FBtr0077430,FBtr0112925	2	3	3	70	2L	4379579	4379597	AGATCCAGATGCTCAAGTC		58	4379631	4379649	GATCTTCCACAACAGAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17224	FBgn0031489	FBtr0077672,FBtr0077671	2	2	2	112	2L	3017310	3017391	ATGAGATCGCTATTCTCGG		58	3017216	3017234	TATGGTCTGAAATCCGTCG		59	NA	
Drosophila melanogaster	50	CG9961	FBgn0031451	FBtr0077740	1	1	1	173	2L	2744537	2744624	GACAAGAAATGTAAGTCCTTGG		59	2744385	2744403	ATCCTTCAAAGCTCTCAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	VGlut	FBgn0031424	FBtr0077769	3	1	1	62	2L	2405010	2405028	ATGAGGTGCAATATGTCGG		59	2405054	2405516	GTTCATGAACACAGTCCCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	robl22E	FBgn0028570	FBtr0077800	3	1	1	85	2L	2290569	2290587	TCAGTCCATGAAGAACGTC		59	2290502	2290520	GTGTCAGAGTGTAGTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15387	FBgn0031403	FBtr0077841	1	1	2	69	2L	2226059	2226077	GATTCTCATGATGCAGCAC		58	2225951	2225969	CCCATGACCCTTAATGACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gr22f	FBgn0041249	FBtr0077902	2	1	1	63	2L	1755575	1755593	AATTTCTGGGACTTCTGGC		59	1755530	1755548	TTTGGTCTCCACACTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31937	FBgn0031360	FBtr0077884	2	1	1	70	2L	1730318	1730336	ATCTCGACGAGCATAAGAC		58	1730369	1730388	ATTGACAAGGACATCCAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14343	FBgn0031325	FBtr0077975	2	1	1	63	2L	1219860	1219878	TTGAGTATTGGAACCTGCA		58	1219905	1219923	CAGACATCCATCGACTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ds	FBgn0000497	FBtr0078045	2	1	1	90	2L	648358	648494	ATTTACAGTATTACGGGCGG		59	648287	648305	GTTCTCTATCCAAGGGTCG		59	NA	
Drosophila melanogaster	50	Pph13	FBgn0023489	FBtr0078070	3	1	1	146	2L	578333	578351	CTTGGCGGAGATTATAAGG		57	578524	578542	GTTATCAAGGGAGTTCGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	alpha-Adaptin	FBgn0015567	FBtr0089488,FBtr0089489	3	2	2	81	2L	411176	411195	CTATTCGTGAGGAAATGGTG		58	411046	411132	ATAACGTCCACATACCAGG		58	NA	
Drosophila melanogaster	50	mir-2b-1	FBgn0046824	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	l(1)G0196	FBgn0027279	FBtr0112508	3	1	5	104	X	21900448	21902842	AGAACCGGTAGTTTCTTCTC		59	21902909	21902927	TCTGAGTTACTAGCAGTGC		58	NA	
Drosophila melanogaster	50	CG9992	FBgn0030744	FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309	1	5	5	93	X	16277004	16277022	AGTCCTACTTCCGAGACTG		59	16276867	16276947	CAAAGTTGTGCAAGTCCTG		59	NA	
Drosophila melanogaster	50	CG1640	FBgn0030478	FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769	2	6	6	83	X	13268114	13268132	ATTCAACCGTTAGACGTCC		59	13268315	13268334	TATGTTATCCAGTGTGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4332	FBgn0030456	FBtr0073726	3	1	1	60	X	13049794	13049812	GCTAAAGGATCTAGTGCCC		59	13049836	13049854	GTAGTGGAAGCTGAATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ant2	FBgn0025111	FBtr0073426,FBtr0073425	2	2	2	100	X	10674035	10674053	TTTATCCACTGGACTTTGC		57	10673656	10673677	GATCACCTTCATTAGACAATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nrg	FBgn0002968	FBtr0071209,FBtr0071208,FBtr0071207	1	3	3	80	X	8426429	8426450	GCAACAGAATAAGGAAAGTGAC		59	8426489	8438894	ATCCAACTATATTCTGGCTCG		59	NA	
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070765,FBtr0070767,FBtr0070769,FBtr0070766	1	7	7	80	X	5270149	5270167	ACAGATCTCATCTGGATGC		58	5270207	5272346	TCTTCCATATACCTAGGGTAGTC		59	NA	
Drosophila melanogaster	50	CG15578	FBgn0040905	FBtr0070659	2	1	1	60	X	4171818	4171838	TCCATTATAATGGTCCTGGAG		58	4171778	4171796	AGATGTTCAGCTCTGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14818	FBgn0026088	FBtr0070364	2	1	1	148	X	1773493	1773511	AACAATCATGATCCCTCGT		58	1773302	1773320	GACATAATGTCGTCTGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TRAM	FBgn0040340	FBtr0070168,FBtr0070167,FBtr0070169	1	3	3	60	X	830597	830615	ATATGGCAAGCCATACACC		59	830639	830657	GTAGAAGAATATCGCGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41576	FBgn0085702	FBtr0114151	3	1	1	61	U	6401115	6401135	CGTAGTGATTCCATGATAAGC		58	6401157	6401176	GAAGCAGTTCAAGACAAGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG40600	FBgn0085499	FBtr0113910	3	1	2	60	U	5775745	5775763	AGTTACCATTGCCTTAGGT		58	5773900	5773918	ATCATTAGGGCAAGTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wdb	FBgn0027492	FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206	1	7	7	125	3R	23392424	23392442	AAATTCTTAGGACTGCGGG		59	23392253	23392336	GTTGATGATACTGCCAAGGA		59	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100638,FBtr0100637	1	3	17	115	3R	20508113	20512918	AGGGCGAAGACATATTGTG		59	20512997	20513015	GGAGAAAGACCACTTCGAC		59	NA	
Drosophila melanogaster	50	crb	FBgn0086905	FBtr0084603	2	1	2	117	3R	20132499	20132517	GGAGTACACTGGTGAACTG		59	20132598	20133928	ACAGTTGTAACCCGATGAG		59	NA	
Drosophila melanogaster	50	beat-IV	FBgn0039089	FBtr0084433	2	1	1	82	3R	19399755	19399773	GGAGTTCTACCGATACGTG		59	19399819	19400034	AAAGCTCCTCAATGACTCG		59	NA	
Drosophila melanogaster	50	p53	FBgn0039044	FBtr0084359,FBtr0084360	2	2	2	93	3R	18878869	18878887	ATCAAGGAGGATATTCCGA		57	18878661	18878742	GATTCCCGGAGTTTAATCC		57	NA	
Drosophila melanogaster	50	CG31176	FBgn0051176	FBtr0084114	3	1	1	108	3R	17499108	17499127	CAAGAAGGTCACCTTTAGTG		58	17498770	17499038	AAGATGATACTTGCTCTGTG		57	NA	InUTR
Drosophila melanogaster	50	alt	FBgn0038535	FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416	3	6	6	165	3R	13500933	13500951	GTAGCAACCACAATAGCAC		58	13500723	13500804	AATGTGTTTGTCGTCTTGG		58	NA	
Drosophila melanogaster	50	Art3	FBgn0038306	FBtr0083135,FBtr0083134	1	2	2	60	3R	11054140	11054158	ATCCTATCCATCTTCGCCT		59	11054098	11054116	CCGAGTTATCTATGCCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5961	FBgn0038056	FBtr0082681	3	1	1	156	3R	8284853	8284932	GCTTGTGTCAAAGTATGGG		58	8284715	8284734	CCATTCTCAGGTACGTAGTC		59	NA	
Drosophila melanogaster	50	Fer3	FBgn0037937	FBtr0082435	3	1	1	61	3R	7519350	7519368	ATCCACATCATCTGCATCC		59	7519307	7519325	ATGATTATAGGGCGAAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Est9	FBgn0015577	FBtr0081556,FBtr0081555	3	2	2	107	3R	3321249	3321666	GAATACCTTCAGATGGTTTCC		58	3321162	3321180	GAAGCGGTACAAATACGTC		58	NA	
Drosophila melanogaster	50	CG2017	FBgn0037391	FBtr0078664,FBtr0114518,FBtr0078663,FBtr0078662,FBtr0078661	2	5	5	93	3R	1685454	1685472	ATGCACGAGATTCAGTCTG		59	1685168	1685189	CATTGTACTTGTAGTTGACCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2663	FBgn0037323	FBtr0078795,FBtr0078796	3	2	2	193	3R	1227160	1227241	TACTGGACTATGTGCACTG		58	1226985	1227003	GTCCAGGATGAAGATGTCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG33927	FBgn0053927	FBtr0091931	3	1	1	269	3R	516125	516143	ATCAGTGTCGTTTAAAGGC		58	515816	515834	CCATTATATGCACTGGACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CS-2	FBgn0029091	FBtr0078476,FBtr0114557	3	2	2	121	3L	21959313	21959331	TCCTCAAGTCAATTGTCCG		59	21959413	21960242	GTCGAAGAAGATGTTAGTTTCC		59	NA	
Drosophila melanogaster	50	CG11307	FBgn0037106	FBtr0078420,FBtr0078421	1	2	2	167	3L	21612250	21612329	AATTTCAGAAACAGCCGAC		58	21612460	21612478	CTTAAGGACGACTTGACGT		59	NA	
Drosophila melanogaster	50	CG6479	FBgn0036710	FBtr0075246,FBtr0075245	2	2	2	93	3L	17330908	17330926	TCTTGCATAGCTGACTACC		58	17330774	17330853	GGAATATTATAGCTGCATCGG		58	NA	
Drosophila melanogaster	50	endos	FBgn0061515	FBtr0075783,FBtr0075782	2	2	2	229	3L	14023965	14023984	CTCAAGTCCAAGTATCCCAG		59	14023369	14023387	TTACAGGGTTGGATGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11255	FBgn0036337	FBtr0075896,FBtr0075895	3	2	2	166	3L	13013917	13014182	TACATTTCGGGCTTCTTCC		59	13013769	13013788	AAGATGATGTCCACGTAAGG		59	NA	
Drosophila melanogaster	50	mirr	FBgn0014343	FBtr0075912,FBtr0075911	2	2	2	113	3L	12698329	12698347	GATCTGAAGGAGAACCTGG		59	12698424	12700490	CAAATCCATGCCATAGCTG		58	NA	
Drosophila melanogaster	50	rols	FBgn0041096	FBtr0076055,FBtr0076057,FBtr0076053	3	3	5	169	3L	12006171	12006189	TTAACCACAAGAATCTGCG		58	12005820	12006038	ATGAGTATGATCTCCCGAC		57	NA	
Drosophila melanogaster	50	CG14130	FBgn0036210	FBtr0076031	1	1	1	189	3L	11809146	11809228	GGATAGCACGAGATACTGC		59	11809381	11809399	GTTCTTTAGAGACGCCTCC		59	NA	
Drosophila melanogaster	50	scyl	FBgn0041094	FBtr0076169,FBtr0076168	3	2	2	60	3L	11247415	11247433	AGTTCATGAAGAGTTTGGC		57	11247455	11247475	TTCTTGGTGATCGTATACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8012	FBgn0040832	FBtr0076699	1	1	1	225	3L	8208607	8208625	AGTCATGTTGGTCAAGGTC		59	8208882	8208900	GTAGTATGGATACGTGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nmo	FBgn0011817	FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758	3	6	6	141	3L	8040250	8040352	GTCTTCGATCCGGATAAGC		59	8040457	8040475	AATCAGCCGTATACTGACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Src64B	FBgn0003501	FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321	3	5	5	178	3L	4596210	4596228	TAAATCCCGCGATGAATCC		59	4595932	4596069	TCTCAAAGAACCAGTCTTCG		59	NA	
Drosophila melanogaster	50	Cip4	FBgn0035533	FBtr0073339,FBtr0113138	2	2	2	82	3L	4327039	4327057	CCATTAGAGGCACGATGAG		59	4325402	4326994	CAGGGAATTCTTATTGCTGC		59	NA	
Drosophila melanogaster	50	CG12734	FBgn0035411	FBtr0073036,FBtr0073035	3	2	2	141	3L	3183013	3183031	TACAAGATGGTACGCATGG		59	3183135	3183209	GTATCAACATCTCACAACGC		59	NA	
Drosophila melanogaster	50	yellow-g2	FBgn0035328	FBtr0072883	1	1	1	60	3L	2277321	2277339	CTCTACATAGCCCTCATCC		58	2277363	2277381	TCAGGTAGGTGAAGTACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15800	FBgn0034904	FBtr0072245	1	1	1	74	2R	19678513	19678531	ATGAGAAACACGAAGAGCC		59	19678457	19678475	AGATCTGCAGCTCAATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rrp4	FBgn0034879	FBtr0072111	2	1	1	83	2R	19443487	19443505	GAGAACATCAAGTCCTCGG		59	19443422	19443440	CACATAGCGACTCTTAAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10505	FBgn0034612	FBtr0071619	2	1	1	80	2R	17177151	17177170	TCTTTAAGGTCTACGGATGG		58	17177019	17177108	GCTGGAAGGAATGAATAGC		58	NA	
Drosophila melanogaster	50	Khc	FBgn0001308	FBtr0087184	3	1	1	88	2R	12157150	12157307	CTGTGACAAACATGAACGAG		59	12157081	12157099	TTTCTTCTGGTTCTCCAGG		58	NA	
Drosophila melanogaster	50	CG13167	FBgn0033706	FBtr0088000	2	1	1	61	2R	8145267	8145285	CTCCTATACGAAGGCACTC		58	8145310	8145328	TTCGCACTTGGTATTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11866	FBgn0033486	FBtr0088423	3	1	1	96	2R	6007151	6007169	ATGCTACATGCGTCTATCC		59	6007229	6007311	GACTTCGTCTAGTATGGCG		59	NA	
Drosophila melanogaster	50	kermit	FBgn0010504	FBtr0088813,FBtr0088814,FBtr0088812,FBtr0088811	1	4	4	60	2R	4035544	4035562	AGCTGTACCAGAAGATTGC		59	4035502	4035520	GTGCAGAAGAGAATGTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30492	FBgn0050492	FBtr0088917,FBtr0088913,FBtr0113382,FBtr0088916,FBtr0088914,FBtr0088915	2	6	6	94	2R	3526397	3527215	CGGTGCTAAATAAGATTGTGG		59	3527270	3527289	GAAATTCTCGTCAATGTGGC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111064,FBtr0111057,FBtr0111100	1	3	60	82	2R	3247001	3247019	ACCTTAAGGGAAAGAGCAG		58	3236471	3246958	CTTGTACCATCTAAAGAAAGGC		59	NA	
Drosophila melanogaster	50	CG9410	FBgn0033086	FBtr0086117	1	1	3	177	2R	2556719	2556737	ATTGAAACAAGGTCAGCAG		58	2557032	2557050	TTGTGGTAATTGCTGACGT		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG17994	FBgn0033072	FBtr0086001	3	1	1	80	2R	2096656	2096674	ACTGTTACAGTTCCCACAG		59	2096594	2096612	GTTGCAACAACTCCTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ret	FBgn0011829	FBtr0081496,FBtr0081494,FBtr0081493,FBtr0081492,FBtr0081495	2	5	5	90	2L	21184334	21184355	GAGCCTGTTAATGTTAAGATGG		59	21184210	21184286	CACGATGAACCAACTTTAACTC		59	NA	
Drosophila melanogaster	50	CG10722	FBgn0032848	FBtr0081335,FBtr0081334	1	2	2	194	2L	20095930	20096011	AACTTCAGCGTTACAACGA		59	20096166	20096187	ACTATGTGTACACAATGTACCC		59	NA	InUTR
Drosophila melanogaster	50	Ca-alpha1D	FBgn0001991	FBtr0090003,FBtr0090006,FBtr0090005	3	3	4	86	2L	16180232	16182782	GTCCAATTGTTTAAGGGCA		58	16182893	16182911	ATAGACCAGATAGGTTCCG		57	NA	
Drosophila melanogaster	50	BicC	FBgn0000182	FBtr0080805,FBtr0080804,FBtr0080803	2	3	3	163	2L	16045385	16045854	ATGTTCAGGTCATATTCTCCAC		59	16046038	16046056	CTCCATCTGGACATTCACC		59	NA	
Drosophila melanogaster	50	pburs	FBgn0032546	FBtr0080634	3	1	1	63	2L	14417236	14417254	GATATAGCCAAGGCACTGG		59	14417191	14417209	TTGATCAAGTGGATCTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31704	FBgn0051704	FBtr0080273	3	1	1	72	2L	11840774	11840792	GGTATTCCAGTACTCCTGC		59	11840828	11840846	ACTATAGGTCACGGAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cdc2	FBgn0004106	FBtr0080051	1	1	1	97	2L	10385157	10385175	TGACTCGGAAATTGACCAG		59	10385021	10385039	TCTTATAGTCGGGTAGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	D12	FBgn0027490	FBtr0079707	3	1	1	63	2L	8434907	8434925	AGTTTACGGGAGATAGTGG		58	8434862	8434880	AAACATCTTTGAGAGCTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079623	1	1	4	81	2L	8244689	8244707	CCATATCCTTTGGCATCCT		59	8244491	8244644	GAGAGGTTTACACAACGCT		59	NA	
Drosophila melanogaster	50	slmo	FBgn0029161	FBtr0079218,FBtr0079217,FBtr0112945	1	3	3	71	2L	6047423	6047441	AACAGATGGTGCTGAAGAC		59	6047370	6047388	CATAGTAGAGCACCTCGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15362	FBgn0031378	FBtr0077814	2	1	1	271	2L	1981473	1981491	AGTACGTGATCTTCAAGGA		57	1981784	1981802	GATCTTGTTGCCGAAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12698	FBgn0030721	FBtr0074139	3	1	1	93	X	15901456	15901544	CACATGAAGGTCAATATGGTG		59	15901599	15901617	CTGTGTCATCATCCAGGAG		59	NA	
Drosophila melanogaster	50	CG1537	FBgn0030260	FBtr0073394	2	1	1	157	X	10956477	10956710	CGTAACATTAACCATTGCTGG		59	10956278	10956296	TAGATGAACTCGCAAGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3097	FBgn0029804	FBtr0070836	1	1	1	108	X	5660892	5661115	AGTGCTTAGAATCTCGGAG		58	5660802	5660820	GTACAGGATGAAGGTCACC		59	NA	
Drosophila melanogaster	50	CG3249	FBgn0029764	FBtr0070795,FBtr0070796,FBtr0070794	1	3	3	102	X	5309430	5309448	ACTTACCAAAGGCATTGTC		57	5309066	5309367	GATTACATTATTGGGACCTAGG		57	NA	
Drosophila melanogaster	50	CG15375	FBgn0029694	FBtr0070637	3	1	1	286	X	3995737	3995831	TCTTCATTTCGTCAAGGTC		57	3996282	3996300	ATATAAGGCGGTACCTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	VhaAC39	FBgn0028665	FBtr0070611	2	1	1	114	X	3775908	3775926	CCTTTACAAGGCCTACCTG		59	3776094	3776112	GATAATTGCACGACGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	sphinx	FBgn0083990	FBtr0111046,FBtr0111045	3	2	3	60	4	996137	996158	CACTTTAAGATTCCTGTAGTGG		58	996177	996197	CTTACTTACAGATGGAGAAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156	2	8	10	77	4	115560	115581	GAGATAACTATGGTTACGTGTC		58	115618	120040	TATTATTGCCTCCCGAATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	dmrt99B	FBgn0039683	FBtr0085454	2	1	1	122	3R	25518815	25518833	CCAAATGCACTCTAATCGC		59	25519205	25519223	CAGGAACCGAAGTGTAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31159	FBgn0051159	FBtr0084270	1	1	1	80	3R	18440610	18440685	CTGCTTTGGAACAGAAGTG		58	18440726	18440747	ATCCTAACTAGGGTTAATGGAC		58	NA	
Drosophila melanogaster	50	CG17565	FBgn0038424	FBtr0083286	3	1	1	170	3R	12259203	12259283	CAGTTTCTAAGCAACTGCC		59	12259417	12259435	TACACTGAACAGGAACTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32473	FBgn0052473	FBtr0082743,FBtr0082744,FBtr0082742	3	3	3	158	3R	9136816	9136899	GGAATTTGACGTGAAGCAG		59	9137021	9137039	TTGAAGGACGATGCTTCAG		59	NA	
Drosophila melanogaster	50	CG12163	FBgn0037303	FBtr0078823,FBtr0078822	1	2	2	60	3R	1064106	1064183	GCTTACAAGGCCATTAAGG		58	1064064	1064082	CCTTGTATGGGTACTCAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14646	FBgn0037241	FBtr0078919	1	1	1	60	3R	216780	216853	GGCAGAAACTTACAACATATCG		59	216873	216892	AATGCTTATCATCTGCAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14639	FBgn0037224	FBtr0078975	2	1	1	60	3R	72794	72871	CGTTGTTCTAATGTGCCTG		59	72894	72913	TTGGTACTTGTATCCCTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32182	FBgn0052182	FBtr0075188	1	1	1	60	3L	17751381	17751399	CCAACTGAGACTGATGGAG		59	17751422	17751441	CCACAATTGCAGTATCAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32141	FBgn0052141	FBtr0075735	2	1	1	60	3L	14196660	14196680	GAAAGATCACCAACTTACCTG		58	14196698	14196720	CAAGTAAGAGGAGTACGATAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mtTFB1	FBgn0036197	FBtr0076112,FBtr0114551,FBtr0114552	2	3	3	60	3L	11702737	11702756	ACGGACAAGATAGTCAAGTC		59	11702778	11702797	CCACCTCAAGAACTAAATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	orb2	FBgn0035938	FBtr0076561	1	1	4	110	3L	8942849	8947041	TTTGTTATTGGCATCTAGGG		57	8942758	8942776	CTTTGGTAACTTGAGCGAG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	zip	FBgn0005634	FBtr0072398,FBtr0072399,FBtr0100467,FBtr0100466	1	4	4	80	2R	20879487	20879567	CAAATGGATAAGCTGAATAGCC		59	20879428	20879447	CTTCTCCTTCTGCAATTCCT		59	NA	
Drosophila melanogaster	50	CG30194	FBgn0050194	FBtr0071954,FBtr0071955	3	2	3	96	2R	18946731	18946749	TATGCCGCATTGATATCCA		58	18946808	18946885	CAAAGAGGGCTACAGTATCC		59	NA	
Drosophila melanogaster	50	CG5742	FBgn0034304	FBtr0086780	3	1	1	62	2R	14037960	14037978	CTGCGATACGAGGAATCAG		59	14037916	14037936	CAGTATATCGGTCGACATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34363	FBgn0085392	FBtr0112584,FBtr0112585	2	2	2	80	2R	6226463	6226545	CTGGAGAACATGTTTAATGACC		59	6226404	6226423	TGATAGAATGGTCAACTGCT		58	NA	
Drosophila melanogaster	50	Pka-R2	FBgn0022382	FBtr0088438,FBtr0112902,FBtr0112901,FBtr0088437,FBtr0088439	3	5	5	72	2R	5886301	5886942	ATGTTATTGAATCTGGCGTC		58	5886248	5886266	AGTCCAGTGTGATTGTAGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG33199	FBgn0053199	FBtr0088688	2	1	1	73	2R	4836300	4836318	GTTCAGCCTTAAGCAACTG		59	4836245	4836265	CTATAGCTCCATTCTAGAGCT		57	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13078	FBgn0032809	FBtr0081256	1	1	1	60	2L	19564929	19564948	ACTATGGTCCTAATGGTCCT		59	19564971	19564989	CAATCTTCTGGTAGAGCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	btv	FBgn0023096	FBtr0110948	1	1	1	80	2L	17969773	17969850	TACTATGGCAAGGAGAAGG		58	17969711	17969729	TTCGTCATGGGTTAGACAG		58	NA	
Drosophila melanogaster	50	CG9463	FBgn0032066	FBtr0079744	3	1	1	121	2L	8767714	8767734	CAATTTGGCTGGCTATTATCG		59	8767556	8767634	GCTCATTGACATACTTGATCAG		59	NA	
Drosophila melanogaster	50	Cyp4ac3	FBgn0031695	FBtr0079068	2	1	1	238	2L	5268725	5268745	GGATCTACTCAATTTAACGCC		58	5268997	5269065	GCCATTTCTGGTCTATGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	slp2	FBgn0004567	FBtr0077500	3	1	1	60	2L	3838115	3838136	ACAATTTCTTACCTATCCTCCG		59	3838157	3838175	ATAACGCTGATACATGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31690	FBgn0051690	FBtr0077704,FBtr0077703	2	2	2	285	2L	2712125	2718300	TCACTTTAATCTGGGCGTG		59	2718549	2718567	CTGAAGTCTTCCATCGGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Tfb4	FBgn0031309	FBtr0077985	3	1	1	106	2L	1150062	1150141	ACATATCAAGGCTCCAGAG		58	1149974	1149992	CATGAACGTCATGTACTGC		58	NA	
Drosophila melanogaster	50	tRNA:CR31578	FBgn0051578	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30155	FBgn0050155	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:K2:42Eb	FBgn0011893	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG13235	FBgn0040766	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CR32658	FBgn0040859	FBtr0073628,FBtr0073626,FBtr0073627	3	3	3	142	X	11985664	11985685	GCTTAGTCTAGGAATCAATTGC		59	11985851	11985869	GTTGGCCAAACATCAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210	1	5	8	85	X	21247686	21250626	ACATGACGCTTATGAAATGG		58	21250674	21250692	AAAGTGGCCATAGAAGGTC		59	NA	
Drosophila melanogaster	50	l(1)G0269	FBgn0029067	FBtr0077226	1	1	1	76	X	21192936	21192954	ATGTGGACTACTTCCTGGA		59	21192793	21192811	TCCGTAAATCTCCATGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572	2	5	5	81	X	20644231	20644249	ACGCTAATATACAGGGTGG		58	20643790	20644186	GACGCACTAACCTAAATCG		58	NA	
Drosophila melanogaster	50	CG33496	FBgn0053496	FBtr0089609	2	1	1	63	X	20081124	20081142	TTCGAGCAGATCTACAACC		59	20080687	20080705	TGTAGTCACCAGAGGTCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14207	FBgn0031037	FBtr0074733,FBtr0074734	2	2	2	95	X	19504475	19504493	ATTAGCTCACCCTTGATCC		58	19504616	19504635	TTTCACAACAATTTCCTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tao-1	FBgn0031030	FBtr0074773,FBtr0074771,FBtr0074774,FBtr0074772	2	4	4	89	X	19465921	19466011	GCTCGAGAATAAGATGGAC		57	19465850	19465869	TCTTTAGTATGCTTCTCGTG		57	NA	
Drosophila melanogaster	50	Grip84	FBgn0026430	FBtr0074777	1	1	3	194	X	19455819	19456733	TTCATCCAGATTGAGACCC		58	19455643	19455662	CATTTGATCGGTGTAGAAGG		58	NA	
Drosophila melanogaster	50	CG15042	FBgn0030937	FBtr0074619	3	1	1	60	X	18421127	18421146	ACATAAACATCCTAGAGGGC		58	18421086	18421107	TTGATATCGCTTCGTAGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Wnt5	FBgn0010194	FBtr0074623	2	1	1	60	X	18396573	18396593	CTTACATCCAAGATAGACGAG		57	18396533	18396552	TCTCCTGTTTGATCTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GalNAc-T2	FBgn0030930	FBtr0074624,FBtr0074625	1	2	2	173	X	18392114	18392132	GATCATCCTGGTGGATGAC		59	18391517	18391535	AAGAAGACGATCACCTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8611	FBgn0027602	FBtr0074440,FBtr0074439	1	2	2	130	X	17313897	17313976	TTCTTCAAACTACATGGCTC		57	17313786	17313804	TTTATGTCGGGAACATCGA		58	NA	
Drosophila melanogaster	50	wus	FBgn0030805	FBtr0074418	2	1	1	60	X	16833834	16833853	GTCATTGCCTATCTATGCTG		58	16833793	16833811	GCAAGTACAGATGATGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32570	FBgn0052570	FBtr0074326	2	1	1	79	X	16629697	16629716	TATCAGGAGGACAACAATGC		59	16629758	16629776	TAGTTGTAGCTACCATCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9634	FBgn0027528	FBtr0074359	1	1	1	84	X	16638924	16638944	GCCAATCATGAGTACTTTGTG		59	16638788	16638881	GATTCAGTTCATTGAGTTCCTG		59	NA	
Drosophila melanogaster	50	CG9723	FBgn0030768	FBtr0074376	2	1	1	63	X	16548651	16548669	GATTATTCCCAGTACGGTG		57	16548606	16548624	ATTGCTTGTCCTTGTAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5877	FBgn0030625	FBtr0074002,FBtr0074001	2	2	2	60	X	15189567	15189588	GCAGAATTGCATATACATAGGG		59	15189609	15189627	ACAGTGAAACGAGTATGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9517	FBgn0030591	FBtr0073982	1	1	2	133	X	14771781	14771799	GAAAGAGAACAACAGTCGG		58	14771334	14771581	ATACTGACGACGTATGACG		58	NA	
Drosophila melanogaster	50	CG9400	FBgn0030562	FBtr0112982	2	1	2	62	X	14182787	14182808	GCTTCATCGATAGATATCATCC		58	14182592	14182611	CAAGTAATGTGAAGTGACCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG2750	FBgn0030376	FBtr0073629	3	1	1	83	X	12001673	12001817	GTTTAGGGATATGACCTATGAGAC		59	12001859	12001877	GTTTCATACGCTTGACGAC		59	NA	
Drosophila melanogaster	50	CG11356	FBgn0030375	FBtr0073635	3	1	1	96	X	11997541	11997561	CTGTGGAAGCATTATTATGCC		59	11997465	11997483	TTAGCAGTGAGAATGTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15738	FBgn0030352	FBtr0073572	1	1	1	97	X	11786400	11786418	ATTCAATGTGGAGGTCTCC		58	11786805	11786823	ACTTGTCTATGGAGTCGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	rho-4	FBgn0030318	FBtr0073518	1	1	3	80	X	11494346	11498350	AGATATTTGACAAGCACGAC		58	11498393	11498411	AATAGCCATCCGAGATCAG		58	NA	
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489	3	8	12	99	X	11291936	11292011	ATATAACCAGAGAACCGCG		59	11292074	11292092	GACACATAGATACCCTGGC		59	NA	
Drosophila melanogaster	50	Ant2	FBgn0025111	FBtr0073426,FBtr0073425	1	2	2	99	X	10674034	10674052	TTATCCACTGGACTTTGCC		59	10673656	10673677	GATCACCTTCATTAGACAATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274	3	10	10	166	X	8768356	8768374	GAGGATGAGAACGAGAACG		59	8768131	8768227	TCTTGTTTCAGAGCCTTGAG		59	NA	
Drosophila melanogaster	50	Trxr-1	FBgn0020653	FBtr0071168,FBtr0071167,FBtr0071169	3	3	3	61	X	8140427	8140445	ACATCAAGTCCGTCAACTG		59	8140468	8140558	GATGTACTCCACTTTCTTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	sdt	FBgn0003349	FBtr0111034,FBtr0100375,FBtr0089974,FBtr0089978,FBtr0100376,FBtr0089975	3	6	7	181	X	8131033	8131051	ATTCCTAGTCAGTCGTTCC		58	8131195	8131276	TATAAAGGATATCCCGCCTC		58	NA	
Drosophila melanogaster	50	CG2258	FBgn0029997	FBtr0071109,FBtr0071111,FBtr0071110	2	3	3	80	X	7991568	7991656	CATTGGAGATTGTCGAGGA		59	7991506	7991527	TAATAGTGAGCATCTTGACCAG		59	NA	
Drosophila melanogaster	50	RpS14a	FBgn0004403	FBtr0071094	3	1	2	138	X	7828191	7828209	TCCATGTCACTGATCTGTC		58	7828370	7828388	AGTGTCTTGCACTTCTCAG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG10932	FBgn0029969	FBtr0071143	1	1	1	62	X	7781997	7782015	AGATCGTCATCTCAGAGGA		59	7781953	7781971	CCAACTGTCCAAACTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1402	FBgn0029962	FBtr0071085	3	1	1	80	X	7732874	7733758	CCAAACAGGAGTTGTACCA		59	7733801	7733820	GCGCATTATTACCTAGTGGA		59	NA	
Drosophila melanogaster	50	Hira	FBgn0022786	FBtr0071070	3	1	1	119	X	7619070	7619156	GAATATCACAGTTCGTGCC		58	7619239	7619257	ATTTGCACTCCTTTAGCAG		58	NA	
Drosophila melanogaster	50	CBP	FBgn0026144	FBtr0071053,FBtr0071052	1	2	2	117	X	7235527	7235615	CTTGTTTAAGGCTGTGGAC		58	7235696	7235714	TATCACAGCGAATGAAACG		58	NA	
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	2	12	15	239	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978621	6978640	AATTGATCTACCTCTGTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	1	12	15	238	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978622	6978640	ATTGATCTACCTCTGTGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	2	12	15	238	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978622	6978640	ATTGATCTACCTCTGTGCA		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG4078	FBgn0029798	FBtr0070807	2	1	1	81	X	5644425	5644506	GAAGCGAATATGAAACTACCG		59	5644548	5644567	CTAGTGGTTCATCCTCTGTC		59	NA	
Drosophila melanogaster	50	CG34435	FBgn0085464	FBtr0112736	2	1	1	79	X	5508351	5508369	GGAGCTAATGAGAATGCTG		57	5508290	5508308	CCTGGTCACATTCATTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070769,FBtr0070766	2	5	7	95	X	5292153	5292440	ACTGACATGGCTAAGACAC		59	5292498	5292517	CTCTAGGTTGGTTAAACGCT		59	NA	
Drosophila melanogaster	50	CG3323	FBgn0029750	FBtr0070758	1	1	1	60	X	5198942	5198960	TGAATACACCACATGACAG		57	5198900	5198919	ATTAGCTTATCATCACTGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2662	FBgn0024993	FBtr0070478	3	1	1	63	X	2594618	2594636	GATGTGATGAACGGATTCG		58	2594663	2594681	ACATCACGAGTTCGAAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trol	FBgn0001402	FBtr0070451	1	1	7	104	X	2417515	2417533	TTGGAAGTAAGTTGCAGCA		59	2416446	2417451	CCTCGATATCACTAGATTCAGTG		59	NA	
Drosophila melanogaster	50	ptr	FBgn0003159	FBtr0070404,FBtr0070403,FBtr0070402	2	3	3	99	X	2243040	2243058	GAGTTCCACTGAGTAAGCT		58	2242892	2242910	TACACCTGACTAGCATCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4045	FBgn0025629	FBtr0070331	1	1	1	68	X	1969241	1969259	CCTATATCCTCAGGAAGGG		57	1969124	1969142	CTATCCACTTGTGCAAGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Adar	FBgn0026086	FBtr0070299,FBtr0100557,FBtr0070300	3	3	3	60	X	1677571	1677591	AAAGTAACCACTGACTATGGG		59	1677613	1677698	GCTTTGCGATCTGATAGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	DAAM	FBgn0025641	FBtr0070241,FBtr0070240,FBtr0070239	3	3	3	82	X	1187405	1187424	TTCTCATGCTCGGTATACAG		58	1187282	1187360	AAAGAAGTCCAAATGCCTG		58	NA	
Drosophila melanogaster	50	TRAM	FBgn0040340	FBtr0070168,FBtr0070167,FBtr0070169	2	3	3	60	X	830604	830622	AAGCCATACACCTACATCG		59	830644	830664	TCAGCGTGTAGAAGAATATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14635	FBgn0029535	FBtr0070142	1	1	1	86	X	738956	738974	GAATATCGCTGACCTGGAC		59	739024	739042	TGTGGCATAGAAAGATCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fz3	FBgn0027343	FBtr0112928,FBtr0070138	1	2	2	60	X	676920	676939	AGCATTTGTATACGAGTGGG		59	676960	676980	GCATATAGAGGAGTGATTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	svr	FBgn0004648	FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070086,FBtr0070082,FBtr0070085	2	7	7	108	X	396239	396323	CTATGACAACTCCTTGGCT		58	396394	396413	CATAATCGGATGGTTGTCAG		58	NA	
Drosophila melanogaster	50	ewg	FBgn0005427	FBtr0100581,FBtr0100579	1	2	8	124	X	165180	165198	ATGTACCAGTCGGTAATGG		58	163391	163473	ATTCTCCACAGATCAAGGG		58	NA	
Drosophila melanogaster	50	ewg	FBgn0005427	FBtr0100581,FBtr0100580	3	2	8	84	X	165638	167225	CAACAGCAATTACACCACG		59	165572	165592	TGGATTATTTGGGTCTACCTG		59	NA	
Drosophila melanogaster	50	CG41561	FBgn0085692	FBtr0114141	1	1	1	60	U	4051903	4051921	CGATTCGTAAGACCCTCTG		59	4051861	4051879	ATTTGCATAGATCCCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41529	FBgn0085671	FBtr0114118,FBtr0114119	3	2	2	65	U	3832285	3832303	CAATTGGTTTGACCTGCTC		59	3832331	3832350	AGCTTCTGGTTGAGATTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11155	FBgn0039927	FBtr0089195	3	1	3	200	4	1152574	1154508	TTAATCCGAAGGCAACCTC		59	1154672	1154690	ATGTCATTGTCGATCCACC		59	NA	
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211	2	4	7	182	4	1080191	1080209	CAACACAACCTCTCAACAG		58	1079960	1080047	TATGAGAAGAGTCCATTGCAG		59	NA	
Drosophila melanogaster	50	ATPsyn-beta	FBgn0010217	FBtr0089186	1	1	2	95	4	1053793	1053811	ATCCGAATTCCAGTTGGTG		59	1053921	1053941	GGTCTTGTCTGTATCAATTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450	3	8	8	168	4	157780	157853	TCGAGCAACCTTAAGACAC		59	158042	158061	CATAAACCAATTGCTTGCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Hsromega	FBgn0001234	FBtr0084059,FBtr0084057,FBtr0084058	3	3	3	60	3R	17123733	17123754	GATTCTGTCAGATTGATTGTGC		59	17123775	17123793	CAGAGAAGTCGATACACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsromega	FBgn0001234	FBtr0084059,FBtr0084057,FBtr0084058	3	3	3	60	3R	17123733	17123754	GATTCTGTCAGATTGATTGTGC		59	17123775	17123793	CAGAGAAGTCGATACACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2135	FBgn0039874	FBtr0085858	2	1	1	153	3R	27595742	27595761	CTCTTGGTATCAGAACTCGG		59	27595554	27595626	AATAAAGGCGGGAAGTGAG		59	NA	
Drosophila melanogaster	50	5-HT7	FBgn0004573	FBtr0085746	3	1	1	60	3R	26795822	26795840	GCTCTCGTCTCTATTCCTC		58	26795780	26795801	GTAGATAATAGGGTTCAGCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34155	FBgn0083991	FBtr0111047	2	1	1	90	3R	26382397	26382415	TAATCGTCAACGTTTACGC		58	26382325	26382344	AGCTTGTCTCCTTTCTAGAC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG15534	FBgn0039769	FBtr0085644	2	1	1	76	3R	26258989	26259007	ATGTCTTGGAAACCACGAG		59	26259680	26259698	AGTCAACTCTAAGGGAGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	janA	FBgn0001280	FBtr0085595,FBtr0085597,FBtr0085596	2	3	3	86	3R	25864788	25864807	TTGAAGGTCTACGGATACTC		58	25864615	25864633	GTAGTCCGGGTATTTGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	kay	FBgn0001297	FBtr0099988,FBtr0099991,FBtr0099989,FBtr0099990	1	4	4	173	3R	25617430	25617514	ACGACCGATACTTCAAGTG		59	25617651	25617669	CGTATTTGAGGTATTCGCG		58	NA	
Drosophila melanogaster	50	kay	FBgn0001297	FBtr0099988,FBtr0099991,FBtr0099989,FBtr0099990	2	4	4	174	3R	25617430	25617514	ACGACCGATACTTCAAGTG		59	25617652	25617670	GCGTATTTGAGGTATTCGC		59	NA	
Drosophila melanogaster	50	Kul	FBgn0039688	FBtr0085460	3	1	1	88	3R	25556242	25556260	TACACAGTAGCCTTAGCTG		58	25556641	25556659	TTAAGCTTCAGATTCGACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG2010	FBgn0039667	FBtr0085428,FBtr0085427	2	2	2	119	3R	25323843	25323861	TAAGTTTATACAGCGCCAG		57	25323944	25324030	ACAATGATCTTGCAGTTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	3	8	8	148	3R	24962000	24962021	GCACAATCATACGTATTTCAGG		59	24962129	24962212	AGTAGGGCTTATCATTGGTG		59	NA	
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	1	7	8	81	3R	24639657	24639675	TACTGCTACGGATATTGGC		58	24639719	24640879	GCTCAAACACCTTATAGCAG		58	NA	
Drosophila melanogaster	50	CG9989	FBgn0039593	FBtr0085307	3	1	1	101	3R	24496949	24497017	TACGTAAACACCGTTCCAC		59	24497082	24497100	CAAACAAGCTTGTGTTGCT		59	NA	
Drosophila melanogaster	50	larp	FBgn0040108	FBtr0089682,FBtr0089680,FBtr0089681	3	3	3	123	3R	24146994	24147108	CGATTATGAAACAGGTCAACTG		59	24146892	24146911	GTTCTTGAAGCTCTTCAGGT		59	NA	
Drosophila melanogaster	50	CG34437	FBgn0085466	FBtr0112738	1	1	1	69	3R	24109732	24109750	TAACAACTGCTAGTTGCGT		59	24109842	24109862	GGTATATTGTCAAACCTTCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4815	FBgn0039568	FBtr0085260	3	1	1	62	3R	23815808	23815826	GATAAACTCATTGCAGCCG		59	23815764	23815782	TTTCTTCCTGGACTCATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mtl	FBgn0039532	FBtr0085191,FBtr0085192,FBtr0085193	2	3	3	60	3R	23463678	23463696	AATCTCCTACACGACAGAC		58	23463720	23463807	GTAGTTGTCGAAGACTGTG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	raps	FBgn0040080	FBtr0085189	1	1	1	61	3R	23409075	23409093	ACGCCTACTTCTACCTAGG		59	23409118	23409136	CGTAAGATCGTGTTTGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31064	FBgn0051064	FBtr0085125,FBtr0085126,FBtr0085124	1	3	3	101	3R	23059041	23059059	CTATCGGATTACCTGCAGG		59	23058896	23058977	TATCACAACGATCTCATCGC		59	NA	
Drosophila melanogaster	50	gro	FBgn0001139	FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963	3	5	5	104	3R	21870081	21870172	CGCCATTATGTTATGTACTACG		59	21870236	21870255	AAGTAGCTGGTTGATCAGTG		59	NA	
Drosophila melanogaster	50	Mst57Db	FBgn0011669	FBtr0084915	2	1	1	67	3R	21656517	21656535	TCCACATCAATAGTCCCAG		58	21656468	21656487	TATTGAATTCTGTGCCTGCA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11790	FBgn0039265	FBtr0084760,FBtr0084761	3	2	2	90	3R	20874455	20874473	CTGAGAAGGGATATACCCA		57	20875008	20875026	AAATAACTTTGCAGTGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11089	FBgn0039241	FBtr0084710	1	1	1	151	3R	20704834	20704910	CAAGATTGCTCTTCTCAGTG		58	20705024	20705042	TAATCTCCGAGACATCCCT		59	NA	
Drosophila melanogaster	50	CG6980	FBgn0039228	FBtr0084698	3	1	1	82	3R	20633975	20634065	GTGCTACATCAAGCTACAG		57	20634111	20634129	GGAGATTACTCTCCTGCAG		58	NA	
Drosophila melanogaster	50	tld	FBgn0003719	FBtr0084691	1	1	1	80	3R	20577194	20577264	GAGATTCGAGGTGGTATGTG		59	20577304	20577325	TAGTCCATAGGATAGTTGGGAG		59	NA	
Drosophila melanogaster	50	CG33340	FBgn0053340	FBtr0084611	2	1	1	78	3R	20189259	20189278	TATCTACTACGTCGAGTCGG		59	20189319	20189337	CTTAATCTGGATGGGAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6454	FBgn0039187	FBtr0084608,FBtr0084609	2	2	2	81	3R	20175505	20175618	TCAACAAGTTCCCTCAGTG		59	20175663	20175681	TCATTCACCACCAATTCCT		58	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	1	5	6	80	3R	20045369	20045388	ATGAACATCTACAACGAACC		57	20025660	20045326	TGGATTCACGGTAAATGAC		57	NA	
Drosophila melanogaster	50	spas	FBgn0039141	FBtr0084533,FBtr0084534	3	2	2	69	3R	19866502	19866520	AATGGTCATTCTACCCTCC		58	19866611	19866629	CAATAAACCCTTAGCCGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4434	FBgn0039071	FBtr0084382	1	1	1	80	3R	19114369	19114388	CCGAGCTTATTATCGAACTG		58	19114247	19114328	GACATATGTTCGGTAGTTGAC		58	NA	
Drosophila melanogaster	50	EloA	FBgn0039066	FBtr0084375,FBtr0084374	1	2	2	64	3R	19079219	19079237	ATGAGTCAGAAGCTCTAGC		58	19079323	19079341	ACCCGAATAGATCTTGGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4704	FBgn0039029	FBtr0084314	3	1	1	60	3R	18670596	18670616	AAGTCTCCATGATGAATTCCC		59	18670556	18670576	GTCTTATTGAGTCGATGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4813	FBgn0039013	FBtr0084326	3	1	1	72	3R	18551262	18551280	CACATCTATGGTCCTACGC		59	18551208	18551226	CATTTCCCTCTGTGTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wge	FBgn0051151	FBtr0110835,FBtr0084329,FBtr0084328	3	3	3	86	3R	18539557	18539638	CAAGGATACGATCCTCGAG		59	18539489	18539507	TACTGCTGACTCCAGTAGG		59	NA	
Drosophila melanogaster	50	CG31156	FBgn0051156	FBtr0084277	3	1	2	102	3R	18435193	18436452	TGTGGAAAGTATTGTCGGAG		59	18435110	18435128	GAGATTAGGCTGGGATGAG		58	NA	
Drosophila melanogaster	50	CG7907	FBgn0038887	FBtr0113262,FBtr0113261	2	2	2	106	3R	17231514	17231532	CAAGATCAACGTGTTCACC		59	17231600	17231709	CAACCAAATCCTTGAAGACAG		59	NA	
Drosophila melanogaster	50	CG3301	FBgn0038878	FBtr0084101	2	1	2	92	3R	17100159	17100238	GCCTGTTGGAAGTAATACG		58	17100085	17100103	AATATGATATTGCACCGGC		58	NA	InUTR
Drosophila melanogaster	50	Rab1	FBgn0016700	FBtr0084104,FBtr0084105	2	2	2	111	3R	17093374	17093393	TGCCGATGACACATATACAG		59	17093164	17093238	AGCAGTATCCCAGATTTGC		59	NA	
Drosophila melanogaster	50	Mvl	FBgn0011672	FBtr0089521,FBtr0089522	1	2	3	184	3R	16881620	16881699	TTTGTTAATGGACTGGGCA		59	16881391	16881409	GCCATGTGTATCACAAGGT		59	NA	
Drosophila melanogaster	50	CG4465	FBgn0038750	FBtr0083851	2	1	1	66	3R	15743360	15743379	TATCTCCTCAAACTCCACAC		58	15743313	15743331	GTGATGACATCGTCATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5629	FBgn0027595	FBtr0083752,FBtr0083753	2	2	2	184	3R	14967736	14967823	AATACAAGCACAAGCTGGT		59	14967333	14967351	AGCGTTACTGATGAACTCG		59	NA	
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642	2	13	13	132	3R	14261181	14261201	ATGTCAGATACTCAGAGATGC		59	14260762	14260781	TTGTTATCTGTGAGACCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ssdp	FBgn0011481	FBtr0083612,FBtr0083611,FBtr0083613	1	3	3	65	3R	14020957	14020975	AAGATCAAGGAGAGCATGC		59	14020910	14020928	GTAGTCCGGATGATCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cdm	FBgn0038574	FBtr0083619	1	1	1	173	3R	14006605	14006624	AGGAGATCGATGTCCTAGAG		59	14006332	14006409	AGAACATAACAATGGCCGT		59	NA	
Drosophila melanogaster	50	CG7785	FBgn0038564	FBtr0083539	2	1	1	85	3R	13848386	13848461	TCATTTATGTGGGCAATGG		58	13848510	13848528	TAGAATGCGTTCGAATCCT		58	NA	
Drosophila melanogaster	50	CG14324	FBgn0038527	FBtr0083500	1	1	1	60	3R	13444216	13444234	CCCAACCAGTAGTTATTCC		57	13444174	13444192	AATCCACCTAGACCTAGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Surf4	FBgn0019925	FBtr0083118,FBtr0083117	2	2	2	81	3R	11170643	11170662	ATTTAAGGTCGACATAGCGG		59	11170516	11170534	GAAGTCCCACAGAATGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ear	FBgn0026441	FBtr0083082	1	1	1	101	3R	11147302	11147320	GAATCCTTTCCGAAACCCA		59	11147454	11147474	GCGAAAGTAAATCTCAACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rrp6	FBgn0038269	FBtr0113235	2	1	1	108	3R	10711364	10711382	TTATGGAAGACCTGACCCA		59	10711162	10711180	ATCTCAAACTGCTCTTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	pr-set7	FBgn0011474	FBtr0082929,FBtr0082928,FBtr0082930	3	3	3	97	3R	10142502	10142520	CGTTTGATGAAGGTCACTC		58	10142581	10142670	AAGGGAACTCCTATTGTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9616	FBgn0038214	FBtr0082896	2	1	1	66	3R	10070972	10070991	ATTCGAAATGCAAGGAAAGC		59	10070870	10070891	CTCATTCTTATTGGGATACGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14372	FBgn0038156	FBtr0100458	3	1	1	198	3R	9283199	9283217	AATGTCACCTGGTACTTGG		59	9283379	9283465	TCGGTTTCAGATTCACGTC		59	NA	
Drosophila melanogaster	50	CG33098	FBgn0053098	FBtr0082579,FBtr0082578	1	2	3	152	3R	8213837	8213855	ACTATGAAGCCTTCGTTCG		59	8214033	8214051	TGTCACCATAGTTGGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	GstD1	FBgn0001149	FBtr0100410,FBtr0082607	2	2	2	85	3R	8193741	8193759	AATGTGAACAGGTGGTACG		59	8193674	8193692	TACTTCTTGAACTCCAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	3	15	15	123	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811939	7812029	GGTTCTTCAGGATGTTGGA		59	NA	
Drosophila melanogaster	50	CG12213	FBgn0037968	FBtr0113223,FBtr0082509,FBtr0082510	1	3	3	129	3R	7792547	7792565	TTCATAAGGACAAGGCCAG		59	7792379	7792397	CAGTTGGTCTTGAATTCCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	l(3)neo38	FBgn0086910	FBtr0082533,FBtr0110877,FBtr0110876	1	3	3	120	3R	7596967	7596985	CTCCATACCGTACTCACAG		58	7595815	7596883	CTGGTTGAGGACTTCTTCC		59	NA	
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082457	2	1	6	71	3R	7417224	7417243	CCAAGAAGCTAAAGATCCGA		59	7416979	7416997	AATACTCGTTGGCTACGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17734	FBgn0037890	FBtr0082360	3	1	2	116	3R	7068559	7068577	GAGTACCTGTTCGACAAGG		59	7068201	7068219	AAGTGATCTAGCCGATGTC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG6608	FBgn0037852	FBtr0082333,FBtr0082334	3	2	2	60	3R	6705785	6705803	CACACTCCTTAAGTCAAGC		58	6705743	6705764	CTTGAGCTTATCGTAAATGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14683	FBgn0037822	FBtr0100412,FBtr0082267	1	2	2	60	3R	6524092	6524111	TGTTGGCTAATGTTGAAGAG		58	6524133	6524152	TTCTCTTCACCATACATCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6465	FBgn0037818	FBtr0082323	3	1	1	83	3R	6501868	6501886	CTCCCTTGCTAATGGTCTG		59	6501746	6501821	ACCATTTGTGGAGGTTAGC		59	NA	
Drosophila melanogaster	50	CG9471	FBgn0037749	FBtr0082160,FBtr0113211	3	2	2	91	3R	5596934	5596952	GAAATTGCTATACCGCAGC		59	5596861	5596879	CATCCTCGTAGTTGGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8176	FBgn0037702	FBtr0113208,FBtr0113207	2	2	4	102	3R	5348606	5349271	CAATCAAGATCAGACACAACAG		59	5349333	5349352	GTTCAATTGCTTCTTCCCAG		59	NA	
Drosophila melanogaster	50	CG8176	FBgn0037702	FBtr0113208,FBtr0113207	1	2	4	100	3R	5348606	5349271	CAATCAAGATCAGACACAACAG		59	5349332	5349350	TCAATTGCTTCTTCCCAGG		59	NA	
Drosophila melanogaster	50	CG12951	FBgn0037677	FBtr0082058	1	1	1	114	3R	5155293	5155375	GGGTCTCAATGATACTTATGG		57	5155199	5155217	ATATTTGGGATCCGTTTGG		57	NA	
Drosophila melanogaster	50	Rel	FBgn0014018	FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338	2	4	4	60	3R	4870435	4870454	TGAAGAATGTGTATCCGGAG		59	4870394	4870414	TTGACCTTACATGGAATCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8136	FBgn0037616	FBtr0081909,FBtr0081910,FBtr0081908	3	3	3	65	3R	4547413	4547431	GAGACATTCGACTCCTTGG		59	4547460	4547478	CACCTGACTTCGGTTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18193	FBgn0037579	FBtr0081839	1	1	1	67	3R	4169721	4169739	TTGAGGAAGCAATTTCAGG		57	4169770	4169788	ATGTTATCCATACTGCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11671	FBgn0037562	FBtr0081829	1	1	1	60	3R	4114152	4114171	TACTAAATAACCGGCATGTG		57	4114191	4114212	TCAGTGATATAGGACTTGACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Antp	FBgn0000095	FBtr0081648,FBtr0081652,FBtr0081651,FBtr0081649,FBtr0081650,FBtr0081647,FBtr0081656,FBtr0081654,FBtr0081653,FBtr0081655	2	10	11	256	3R	2734436	2734454	CAGAACCATCACAACATGG		58	2724212	2724230	AGCTCTAGAGTCTGGTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2185	FBgn0037358	FBtr0078732	3	1	1	63	3R	1479381	1479399	GAGGATCTGATGCGTATCC		59	1479336	1479354	AGGAATGAACTATCCGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2519	FBgn0037336	FBtr0078761,FBtr0078762	3	2	2	84	3R	1369007	1369095	AGATACGGGCTTTATTGGA		58	1368941	1368959	GATCGTACCTAGGAATCCT		57	NA	
Drosophila melanogaster	50	CG12000	FBgn0037314	FBtr0078805,FBtr0078806	2	2	2	76	3R	1183098	1183116	CAAGGACAGGGACTTTACC		59	1182969	1182987	TATCGCGGTAGTAAAGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199	3	14	15	133	3R	1100031	1100465	GAGCACAACGTATTTGGTG		59	1099916	1099934	TACATATTCTCGCCAGTCC		58	NA	
Drosophila melanogaster	50	laf	FBgn0020280	FBtr0078852	1	1	1	66	3R	702550	702568	AGGTCTCCAGTAAGGAAGG		59	702425	702443	ACAAGCTCTTGCTTATCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31526	FBgn0051526	FBtr0078929,FBtr0111213	3	2	2	189	3R	359275	359293	AATGCATCTTCCCTTAGCC		59	359446	359464	AATAACTACGATCGTGGCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14651	FBgn0037254	FBtr0078927	2	1	1	60	3R	307542	307562	GCAGTTTATCCTTAAGATGCC		59	307583	307602	TTCCTTGAGGTTGATGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32944	FBgn0052944	FBtr0110851,FBtr0078948	3	2	2	95	3R	239079	239165	AGAACCGAGTGGAATTCTC		58	239002	239020	TGTGAACTACTCGATTCGC		59	NA	
Drosophila melanogaster	50	growl	FBgn0037245	FBtr0078922,FBtr0078921	3	2	2	105	3R	231260	231331	GTACAACTAAGTCTGAGGGC		59	231399	231417	TTCTTCTTTGAACGACGCT		59	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338	1	5	15	165	3R	110121	120861	CGTTAAAGGAGGTGATGGA		58	120990	121008	CTTATCGCGAATGTCTTGC		59	NA	
Drosophila melanogaster	50	slif	FBgn0037203	FBtr0078555,FBtr0078556,FBtr0078557	3	3	3	86	3L	22885585	22885671	AATCTTTGCGTCCATAATGG		58	22885720	22885738	ATGGTGTATGCTAACAGGG		59	NA	
Drosophila melanogaster	50	mael	FBgn0016034	FBtr0089631,FBtr0089633,FBtr0089632	3	3	3	118	3L	22718019	22718093	GATGTCCCATGATCTGGAG		59	22718175	22718193	TCAACGAATATTCGCATGC		58	NA	
Drosophila melanogaster	50	CG6838	FBgn0037182	FBtr0078540,FBtr0078539,FBtr0113186	3	3	4	64	3L	22709981	22710078	CTAACAAATCCTGCTTCGAC		58	22709936	22709954	GATGCCATAGGTAACGGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7139	FBgn0027532	FBtr0078486	3	1	2	138	3L	22063978	22063996	GAGCCCAATACTAGTTGGT		58	22063253	22063879	CCTTCATTAACTGAATGAGCTC		59	NA	
Drosophila melanogaster	50	CG14573	FBgn0037125	FBtr0078433	3	1	1	166	3L	21727439	21727457	AGGATGTGGATACAGATGC		58	21727587	21727605	CAACTTGCCCAATCTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11247	FBgn0037120	FBtr0113184,FBtr0078459,FBtr0078458	1	3	3	149	3L	21718589	21718666	TATCAGTGTAGGATCTGCC		57	21718458	21718476	CATGTGGTTCTTTAGGTGC		58	NA	
Drosophila melanogaster	50	CG33054	FBgn0053054	FBtr0078317,FBtr0078316	3	2	2	60	3L	21190925	21190944	CTACCTAGTAACCAAGCCTC		58	21190884	21190903	AGATGCTTGTACAGATTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33285	FBgn0053285	FBtr0078325	1	1	1	60	3L	21081675	21081694	AGCTCCAAATAGATCAACTG		57	21081634	21081652	ATTAGAGACATGGGTGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12983	FBgn0037040	FBtr0114618	3	1	4	94	3L	20959003	20959088	GCCTTAATGATGAACAAGGA		57	20958928	20958946	ATGGGTACATCCTGTAGTC		57	NA	
Drosophila melanogaster	50	CG12983	FBgn0037040	FBtr0114616,FBtr0114618,FBtr0078332,FBtr0114617	2	4	4	60	3L	20959685	20959706	GATCTTAAGACAAGTGTAGCCT		59	20959588	20959607	TCTGAAGTTCCTTGTACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0100238,FBtr0100237,FBtr0078257	3	3	10	189	3L	20809757	20809775	CACATGTCCTACATGATGG		57	20809928	20825958	GTTTGACTTGTTCCCTCTC		57	NA	InUTR
Drosophila melanogaster	50	CG14086	FBgn0036860	FBtr0074994	3	1	1	104	3L	19272207	19272495	TGCGCAGAGGATAATTACC		59	19272563	19272581	GATGACCGCATAAACAGGA		59	NA	
Drosophila melanogaster	50	fz2	FBgn0016797	FBtr0112890,FBtr0075028	3	2	3	219	3L	19153743	19153761	AAATCAACCAGATAGCAGC		57	19139397	19139415	TTAGCTTAGTTCGGTTGTG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG3797	FBgn0036842	FBtr0075037	3	1	1	68	3L	19054864	19054883	TTCTAAACTCGCTTATGAGC		57	19054675	19054693	ATTGCTGGGAGATCAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14073	FBgn0036814	FBtr0075084,FBtr0075085	1	2	2	80	3L	18796091	18796174	TTGCTTAACAAGCTCTGTC		57	18796029	18796047	ATCTATCTTGAACTCCCGT		57	NA	
Drosophila melanogaster	50	CG13379	FBgn0036804	FBtr0113179	3	1	1	60	3L	18674642	18674660	GGCCAACTATCTGTACCAG		59	18674600	18674619	TGTCTCGTTAAAGATTCCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32196	FBgn0052196	FBtr0075118	1	1	1	80	3L	18452968	18453046	GATTTGGATGATCAGGAGAG		57	18452907	18452925	TGAATCAGTGTTCAACAGG		57	NA	
Drosophila melanogaster	50	CG6259	FBgn0036740	FBtr0075201	3	1	1	142	3L	17613943	17613961	GTCGTTCAACATGGAACAG		59	17613740	17613837	CTTGGATGTCCTCGATCTG		59	NA	
Drosophila melanogaster	50	Papst2	FBgn0036695	FBtr0075279	3	1	1	158	3L	17037248	17037330	ACCTTACAATATCTGTGGTCG		59	17037450	17037468	TTCGATGAGGAATTTGCGA		59	NA	
Drosophila melanogaster	50	CG32158	FBgn0052158	FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404	2	5	7	125	3L	16485860	16485878	TTTGACTGGGATGTGAGTG		59	16485591	16485772	AATGATTGTCGTATCCCTCC		59	NA	
Drosophila melanogaster	50	fax	FBgn0014163	FBtr0100477,FBtr0100478,FBtr0075413,FBtr0075412	3	4	4	190	3L	16398660	16398678	ATGAAGGACAAGTGCTTCC		59	16398260	16398433	TTCTCGTTTGACTTGTCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13035	FBgn0036628	FBtr0075414,FBtr0075415	1	2	2	96	3L	16391793	16391813	TTGGTCATATCCTGTATTCCC		58	16391125	16391735	AGGTGAAGTTCTTGTCCTG		59	NA	
Drosophila melanogaster	50	Zn72D	FBgn0017453	FBtr0075493,FBtr0075494	1	2	2	286	3L	16104977	16105111	ATAGGACAGCTAATCGCAC		59	16104709	16104727	ATAGAATGTCTTGGTGGCG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	brm	FBgn0000212	FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523	1	4	4	159	3L	15964327	15964406	GATACCATTCTAGGTCGAGG		58	15964187	15964205	GATTCTTACGCTTTCGTCG		58	NA	
Drosophila melanogaster	50	pHCl	FBgn0036542	FBtr0100034,FBtr0100037,FBtr0100035,FBtr0100036	2	4	4	105	3L	15857831	15858867	ATGGAGAGCATTTCCTACG		59	15857744	15857763	TTAAGTACGCGTTCAATGTG		58	NA	
Drosophila melanogaster	50	Eig71Ee	FBgn0004592	FBtr0075585	1	1	1	60	3L	15648354	15648374	CACTACTAAGAAGACAAACCC		57	15648314	15648332	TTCCGTCAATGGAGTAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdi	FBgn0014002	FBtr0075650,FBtr0075648	2	2	2	62	3L	15131457	15131475	TTAAGATCTCGTCCTTCCC		58	15131413	15131431	AGTCGATGACCTTGTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100039,FBtr0100040	1	2	6	93	3L	14193463	14193483	CGAACGATGGAAATAACAACC		59	14193538	14193847	TCGTCATCATCTTGAGGTG		59	NA	
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100041	2	1	6	99	3L	14223198	14223286	AAAGATTGTCTGGAACTGCT		59	14223348	14223366	CTGCATATTCGGTCTTGGT		59	NA	
Drosophila melanogaster	50	Rgl	FBgn0026376	FBtr0075793	2	1	4	82	3L	13903682	13907076	TATACCTACACGAAGCCCA		59	13903618	13903637	ACTTTCTTCAGGTAAACGGT		59	NA	
Drosophila melanogaster	50	CG14105	FBgn0036359	FBtr0075857	2	1	1	101	3L	13419261	13419281	GGTGTCCTTTATCGTAAACTG		58	13419125	13419198	TTCCACCAACTGTTCTCTG		59	NA	
Drosophila melanogaster	50	CG11279	FBgn0036342	FBtr0075887	1	1	1	80	3L	13040390	13040408	CGTTATTTCGAAGTCGGTC		58	13040452	13040470	TTGCTCAACTGGATGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14119	FBgn0036322	FBtr0075869	2	1	1	62	3L	12884895	12884916	GTCCTGTTTCAATGAATGTACC		59	12884939	12884957	GTTGTCCCATATACGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CAH2	FBgn0027843	FBtr0076001	1	1	1	127	3L	12175451	12175469	TACACTGGTTCTCTGACCA		59	12175621	12175639	AGATGATCATCGTTGGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32091	FBgn0052091	FBtr0076106	3	1	1	80	3L	11635177	11635257	CTTCAGCATTACGAATGGC		59	11635301	11635319	AAGTCAAATCCGTAGACGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG33490	FBgn0053490	FBtr0089526	3	1	1	91	3L	11566886	11566964	AAGTATTCGTGGTATCCCT		57	11566813	11566832	TATTCTAGCAGAGATCGGAC		58	NA	
Drosophila melanogaster	50	CG7573	FBgn0036153	FBtr0076170,FBtr0076171	1	2	2	100	3L	11305505	11305523	TGTTGGGTTTGATTTGTGC		59	11305639	11305660	CTCGCTTAACATATGAATAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr67Fa2	FBgn0036109	FBtr0076192	1	1	1	87	3L	10885432	10885450	CTTGGAGTACATCCGTACC		59	10885498	10885519	CGATTTCGATTAACCAAAGACC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG34001	FBgn0054001	FBtr0100056	3	1	1	61	3L	10627414	10627432	GGATAAACCATTTGCGGTG		59	10627457	10627475	TTTCTAGGAGTCGTTCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpr10	FBgn0052057	FBtr0076310,FBtr0076308,FBtr0076309	3	3	3	84	3L	10143596	10144088	TCATCAGGATAAGGTGCTC		58	10143530	10143548	AATGGATTTGGTCTCCTCC		58	NA	
Drosophila melanogaster	50	CG32052	FBgn0044328	FBtr0076330	3	1	1	83	3L	9798477	9799013	CAGGAAACGGTATACATCGT		59	9799059	9799077	GAAAGTCAACTGGTTGTGC		59	NA	
Drosophila melanogaster	50	CG8336	FBgn0036020	FBtr0076384,FBtr0076386,FBtr0076385	1	3	3	122	3L	9624229	9624301	CAAGTTCACAGGAGATGGG		59	9624387	9624405	TAGTATCGATTCGCCTTGC		59	NA	
Drosophila melanogaster	50	CG32048	FBgn0052048	FBtr0076377,FBtr0076376	1	2	2	107	3L	9584403	9584421	ATAATGCCATCGCATTCGA		59	9585230	9585248	CAGCTGAGTGATCTCAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	path	FBgn0036007	FBtr0076428,FBtr0076427	2	2	2	109	3L	9490135	9490223	CCAACAACCGATAATGAAACTC		59	9490047	9490066	AAGATTCCCATGATGAGACC		59	NA	
Drosophila melanogaster	50	CG3967	FBgn0035989	FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480	1	5	5	116	3L	9411532	9411550	AACAATTTCGTGCTCTACG		58	9410905	9411452	TGTGTTAGGACTGTTTGTG		57	NA	
Drosophila melanogaster	50	eIF-4E	FBgn0015218	FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487	2	7	7	94	3L	9393610	9393692	AGAACATTCGTCCCATGTG		59	9393534	9393553	GTTATCCAGATCGGTCTTGG		59	NA	
Drosophila melanogaster	50	CG4452	FBgn0035981	FBtr0089493,FBtr0089494,FBtr0089495	3	3	3	192	3L	9362319	9362340	CATGTGGTTGCTATAACATACC		59	9362724	9362742	AGTTGTCCACCTTCATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5144	FBgn0035957	FBtr0076523	3	1	1	60	3L	9041122	9041142	AGCTGGAGAGTAAGATTTGTG		59	9041162	9041182	TATTTACCCTTGTACTCTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cp18	FBgn0000357	FBtr0076571	3	1	1	87	3L	8720281	8720299	GAAACCATGGAGGATATGG		57	8720350	8720368	TACTGAGATCCCACATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SrpRbeta	FBgn0011509	FBtr0076598	3	1	1	90	3L	8712804	8712822	TATAAACACCGTGCCAAGG		59	8712675	8712750	TGGTGTACAGAAAGTCTGC		59	NA	
Drosophila melanogaster	50	Idh	FBgn0001248	FBtr0076671,FBtr0114548,FBtr0114547,FBtr0076668,FBtr0076673,FBtr0076669,FBtr0114549,FBtr0076667,FBtr0076670	2	9	9	60	3L	8350910	8350931	CATTAAGAGCCAACTGATTCTG		59	8350871	8350889	ACCAAGATCGTAGGTATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7112	FBgn0035879	FBtr0113153	2	1	2	110	3L	8344379	8344397	ATCGGGATAATGGTAGTGG		58	8344471	8344876	TCTTGTACTCCTGATTGCC		58	NA	
Drosophila melanogaster	50	CG16998	FBgn0035795	FBtr0076829	1	1	1	60	3L	7532761	7532781	GGCATTGATTACATCACTCTG		59	7532721	7532740	GCTATCTGGATACTGAACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lqf	FBgn0028582	FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794	3	6	6	87	3L	7527257	7527345	GGATTTCAAGGATCCAAACG		59	7527392	7527413	AGAAATATCCAGCAGATCTAGC		59	NA	
Drosophila melanogaster	50	smid	FBgn0016983	FBtr0076851	3	1	2	101	3L	7375349	7375367	GAAACAGATGACCAGGGAG		59	7375430	7375502	GAAATGATCGAGAATGCTTGG		59	NA	
Drosophila melanogaster	50	CG8607	FBgn0035760	FBtr0076837	2	1	1	61	3L	7313437	7313458	GGCGAATCTGTATAAGAAACAC		59	7313543	7313561	GAATGTCGTGCATGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mei-P22	FBgn0016036	FBtr0076836	3	1	1	64	3L	7237763	7237781	ATCCCGGGATAAAGTTGTC		59	7237809	7237827	TATATGGAGGCTTCAGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33523	FBgn0053523	FBtr0091475	1	1	4	102	3L	5918409	5918505	CTGGGTACTAAATGCTGCT		59	5918570	5918589	AATGTACTGGTTGATGTCCT		58	NA	
Drosophila melanogaster	50	CG10576	FBgn0035630	FBtr0077121,FBtr0077122	1	2	2	210	3L	5757776	5757794	TGACTACACGTTAAAGGCC		59	5756865	5757540	GAGGGAGTAGTTATTGGCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33514	FBgn0053514	FBtr0091456	1	1	1	60	3L	4365596	4365615	TTAAGACATGGATCGAGCAG		59	4365638	4365656	ACCAGAAACTGATCATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11583	FBgn0035524	FBtr0073242	1	1	1	60	3L	4282229	4282247	TGAAGATGACGGGAAACTG		59	4282187	4282206	AATTTGGAGTCAAACGAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr64Aa	FBgn0035510	FBtr0073254	3	1	1	107	3L	4208899	4208918	CAATACACCTTCAGCTACGA		59	4208484	4208502	CTCAATCAGTGAATAGGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11594	FBgn0035484	FBtr0073283,FBtr0073285,FBtr0073284	2	3	3	97	3L	4023565	4023583	CAAATACTTGGCGTTCGTC		59	4023428	4023446	AAAGTAGCGTTTGAAAGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	mge	FBgn0035473	FBtr0073176,FBtr0073175	1	2	2	63	3L	3908526	3909016	GAACTACGATGATGAGCCC		59	3908481	3908499	GAACATCTCGGTTAGTCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11505	FBgn0035424	FBtr0073046,FBtr0073047,FBtr0073045	3	3	3	96	3L	3231784	3231917	GCCAAAGAGAAAGATAATCGTC		59	3231974	3231992	TAGTGTTGTGCTCTGTAGC		59	NA	
Drosophila melanogaster	50	CG32278	FBgn0052278	FBtr0073033	1	1	1	81	3L	3171095	3171170	AAGCTCAAGCAGATCAAGG		59	3171214	3171233	CCAGATCCTTGTGTAGAGTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	1	9	15	80	3L	3083795	3084812	CTCGCCACTTATATGAATCG		58	3084852	3084873	CAAATTAAGTAGTGAGAACCCG		59	NA	
Drosophila melanogaster	50	CG33234	FBgn0053234	FBtr0113457	1	1	2	112	3L	2662835	2662999	ATATGGATGCTGAGATGCC		59	2663072	2663093	CTTAGCCAAGTCAAGATAACAC		59	NA	
Drosophila melanogaster	50	CG12020	FBgn0035273	FBtr0072778	1	1	1	60	3L	1798157	1798176	TTCACGTTCTTCATTTGCAC		59	1798199	1798217	CTACGTCCGTAATGACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7955	FBgn0035244	FBtr0072754,FBtr0072756,FBtr0072755	3	3	3	154	3L	1622520	1622538	AGTACTCCACTCAGGTAGG		59	1622656	1622740	CAGAATGTTATGCTCGGTG		58	NA	
Drosophila melanogaster	50	pUf68	FBgn0028577	FBtr0072710,FBtr0072707,FBtr0072709,FBtr0072708	2	4	4	157	3L	1498789	1499053	CTCATGTGCAGAGTCTACG		59	1498650	1498668	ATCTCATACTCCACGAACG		58	NA	
Drosophila melanogaster	50	CG13914	FBgn0035209	FBtr0072678	3	1	1	85	3L	1331979	1331997	GTCAGAATGTGGCTTTGTC		59	1332046	1332064	GTTCTCCAGGATCTTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3344	FBgn0035154	FBtr0072609	2	1	1	72	3L	686599	686617	TACAGGTTGATGTCCAGAG		58	686492	686510	CCACATCGAATTTCACGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	RhoGEF3	FBgn0035128	FBtr0089651,FBtr0089654,FBtr0089653,FBtr0089652	1	4	4	81	3L	302290	302367	CATTTGTGATGGTTACCTGC		59	302411	302429	GTTGGAGAAGATAAGCCGA		59	NA	
Drosophila melanogaster	50	gol	FBgn0004919	FBtr0072460,FBtr0072459	3	2	2	74	2R	20962926	20962944	ACACCATACGGATATTGCC		59	20962812	20962830	TTCGATGCTCTATAAGCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Atf-2	FBgn0050420	FBtr0072381,FBtr0072382	2	2	3	80	2R	20766554	20766574	GTACATAGTGGCCCTAATAGC		59	20766614	20766695	TTATGGAACCAAGTTACTCCG		59	NA	
Drosophila melanogaster	50	yki	FBgn0034970	FBtr0110864	1	1	3	148	2R	19953830	19954095	ATCCCAGAATGCAATCTGG		59	19953617	19953635	CAAATCGTCAGGTTTGTGG		59	NA	
Drosophila melanogaster	50	CG34213	FBgn0085242	FBtr0112406	2	1	1	80	2R	19854979	19855050	AATTCAGATGAGGGAACCC		58	19854917	19854937	GAACTGGAAACTAAATCCAGC		59	NA	
Drosophila melanogaster	50	CG4585	FBgn0025335	FBtr0072227	2	1	1	68	2R	19751615	19751633	CCAGTACGAAACTACCCAC		59	19751565	19751583	CACAGGATATCCAGGTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tango11	FBgn0050404	FBtr0071747,FBtr0071746	1	2	2	60	2R	17604978	17604996	GGGAGAAGATCGTCTACTG		58	17604936	17604955	AGCCAGAATATTGTCTTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10069	FBgn0034611	FBtr0071590,FBtr0071589,FBtr0071591	1	3	3	80	2R	17172236	17172254	ATCTATCAGATGTGAGCGG		58	17172298	17172372	GATACATCAGCAGAATGGG		57	NA	
Drosophila melanogaster	50	CG13438	FBgn0034545	FBtr0086237	2	1	1	60	2R	16580845	16580864	AATGGCTTCAATGACATGGA		59	16580887	16580905	TGGTAGTCTGTCTCCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	exu	FBgn0000615	FBtr0086243,FBtr0086242,FBtr0086244	3	3	3	134	2R	16557493	16557511	TATGCTGAAGTCGATGCAG		59	16557294	16557313	TAGATAAGCACAATCCCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11159	FBgn0034539	FBtr0086248	3	1	1	129	2R	16543721	16543740	CATCCAAATCTATGCAGCTG		59	16543480	16543577	TCGTTAAGGAACTCTTCGC		59	NA	
Drosophila melanogaster	50	CG11110	FBgn0034535	FBtr0086231	1	1	1	145	2R	16529637	16529655	GAAGATTATCAAGCGCGTG		59	16529764	16529782	GTCCAAAGGTATTGCTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13428	FBgn0034515	FBtr0086267	3	1	1	198	2R	16427862	16427880	TATTTACGTTGTGGCTCTG		57	16427295	16427313	GTCCTCCAATGTATCACGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	mus209	FBgn0005655	FBtr0086308,FBtr0086307	2	2	2	62	2R	16149429	16149447	GATCAAGGATCTGGGTCAC		59	16149385	16149403	TATGTCTCGTTGTCCTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp56i	FBgn0043532	FBtr0086337	3	1	1	60	2R	15755650	15755670	GTTAGTCGTCGTTACATTACC		58	15755749	15755768	GCATTGATCCTTAATGGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457	3	11	15	114	2R	15365199	15366254	CTTTCACTCTGGTCAAACC		58	15366332	15366350	GAGTTTGGAGAAGAAGCTC		57	NA	
Drosophila melanogaster	50	cora	FBgn0010434	FBtr0086506	2	1	4	101	2R	15124559	15124841	GAAGGAGAAGTTGATGCGA		59	15124906	15124924	ATGGCCTCAATCTCTAGGT		59	NA	
Drosophila melanogaster	50	l(2)03709	FBgn0010551	FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616	1	6	6	191	2R	14707870	14707888	GATGATCAACATCTCGCTG		58	14708043	14708123	ATGAGTAGGGATACCTGCT		59	NA	
Drosophila melanogaster	50	CG34020	FBgn0054020	FBtr0100075	2	1	1	116	2R	14645021	14645139	ATAGCCCTATTGGTTCACC		58	14644776	14644794	TTATGGACTTCCTTGGGAG		58	NA	
Drosophila melanogaster	50	mRpS28	FBgn0034361	FBtr0086714	1	1	1	99	2R	14502017	14502035	TTGGTTGGAAGTTTCACTG		58	14501879	14501897	AACTCCAAGTCCTTGATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	GstE7	FBgn0063493	FBtr0086675	1	1	1	60	2R	14294602	14294620	AGAAGAATCCACAGCACAC		59	14294642	14294662	GAGTCCCAGATATAATGTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dgp-1	FBgn0027836	FBtr0086774,FBtr0086773	2	2	2	137	2R	14058156	14058234	TATGGAAATAAGGGTTGCC		57	14058037	14058055	TCAATTTCGTGCTTGTGAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Dgp-1	FBgn0027836	FBtr0086774,FBtr0086773	3	2	2	208	2R	14058156	14058235	TTATGGAAATAAGGGTTGCC		57	14057967	14057985	CTTGTTAACCACATTGCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10910	FBgn0034289	FBtr0089630	3	1	1	121	2R	13908154	13908172	GATATTTGGAACGCCAGGA		59	13908257	13908343	ATTCAGAACGGTATCCACG		59	NA	
Drosophila melanogaster	50	Sema-1b	FBgn0016059	FBtr0086890,FBtr0086891	2	2	2	106	2R	13565404	13565422	CAAGACAAAGTCCTAGCCC		59	13564084	13565334	TTGTAGATGACGTCCTTGG		58	NA	
Drosophila melanogaster	50	rhi	FBgn0004400	FBtr0086897	2	1	1	103	2R	13519484	13519502	GAGCTTGAGGATCATTGTG		58	13516193	13516212	TTGGAGTCGATTATGTTGTG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	l(2)k07433	FBgn0022085	FBtr0086948	2	1	3	83	2R	13408423	13411598	AATCTAACCGGTCCTAAACTC		59	13408360	13408378	AACACAGTATTCAACGGCA		59	NA	
Drosophila melanogaster	50	CG4853	FBgn0034230	FBtr0086938	2	1	2	121	2R	13403022	13403097	GGTTTCTATCCTAAACACCCA		59	13403180	13403198	TGATAAGCAGGTTGACCAC		59	NA	
Drosophila melanogaster	50	CG4847	FBgn0034229	FBtr0086937,FBtr0086936,FBtr0086934,FBtr0086933,FBtr0086935	1	5	5	66	2R	13400456	13400474	AATTGACCGGTCTGAAGAG		59	13400569	13400587	TTGACCAACTTCAAACTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34193	FBgn0085222	FBtr0112386	1	1	1	83	2R	13397520	13397538	CACTTTGGCTCTTTCAGTG		58	13397652	13397670	TTCTTCGTCATAGGGAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6796	FBgn0034177	FBtr0087057	3	1	1	170	2R	12889886	12889967	GAAATGTTGGCTGAAGGAC		59	12890099	12890119	ATCCATGTAGTCGTGTATAGC		59	NA	
Drosophila melanogaster	50	CG34191	FBgn0085220	FBtr0112384	1	1	1	60	2R	12839926	12839944	ACTGCTGGTAATGTGTTCC		59	12839968	12839986	CTCGATCTCTGGGTATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	inaC	FBgn0004784	FBtr0087047	2	1	1	82	2R	12788521	12788596	AATAACGAGCTTCCTGACC		59	12788642	12788660	AAGGATGCGTGGTAATCTC		59	NA	
Drosophila melanogaster	50	Hmgs	FBgn0010611	FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146	1	5	5	60	2R	12227687	12227705	CAGCAGAAGGATACTTCCA		58	12227727	12227747	GGAATAGGATAGCATCGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lis-1	FBgn0015754	FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240	3	6	6	211	2R	12070355	12070374	GCCGGAGATTATGTACTCTC		59	12070615	12070701	CGTAATTCAACCTTGCAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8405	FBgn0034071	FBtr0087210	3	1	1	80	2R	11936759	11936841	GTTTATAGTCGACCTGCTG		57	11936885	11936903	AATATGACAGTGAGCAACG		57	NA	
Drosophila melanogaster	50	CG8152	FBgn0034008	FBtr0087392	2	1	1	60	2R	11198382	11198400	TCGTGAGTTCTACAAGGAG		58	11198340	11198358	ACTTGGAAGGTTAGGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	chn	FBgn0015371	FBtr0111007,FBtr0111006,FBtr0087415,FBtr0087416	3	4	4	113	2R	11025934	11026024	CAAATCTGCAACAACTCGA		58	11026101	11026119	GTTGCTGGATTACATTGGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG10131	FBgn0033949	FBtr0087499	2	1	1	62	2R	10517517	10517535	TGTATGACATCCTGGAGAG		57	10517561	10517579	GATGCAAATCCTTGTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp50a	FBgn0050067	FBtr0087557	2	1	2	93	2R	10258354	10258372	GTACACGTTTGTTGCTCAG		59	10258222	10258297	AATCTAAACGGCAACTTGC		59	NA	
Drosophila melanogaster	50	Ih	FBgn0028428	FBtr0100372	2	1	4	87	2R	10179875	10181605	GAGGAGGTCTATATTCTGCA		57	10181655	10181673	TTGTCAAGCCATCTTTGTC		58	NA	
Drosophila melanogaster	50	CG13018	FBgn0040751	FBtr0087581	2	1	1	118	2R	10044829	10044847	GGATCTCAAGATGTGCCTC		59	10044729	10044747	CGTAGAAGGTATTGCGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33155	FBgn0053155	FBtr0100451,FBtr0100452,FBtr0100453	3	3	3	273	2R	9842525	9842543	TTTGCCCTGATTGATTCAG		57	9842950	9842968	TAGATCTTCTCGATCACCG		57	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	drk	FBgn0004638	FBtr0087693,FBtr0087697,FBtr0087698,FBtr0087696,FBtr0087694,FBtr0087695	1	6	6	80	2R	9385034	9385133	TCTCCTTATCAGTCAAATGCC		59	9384974	9384992	CCCAGAGGAAGAATTTGCT		59	NA	
Drosophila melanogaster	50	CG17050	FBgn0033831	FBtr0087719	3	1	1	90	2R	9277947	9278040	TGATGTTTCAGGCTTTGGA		59	9277875	9277896	GCAGAGGTATACAATTCTTCGA		59	NA	
Drosophila melanogaster	50	CG4716	FBgn0033820	FBtr0087747,FBtr0087746	2	2	2	60	2R	9144345	9144366	CCGGAATCCATATTATCAAACG		59	9144387	9144405	TTATGCTCCTCAGATGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nacalpha	FBgn0086904	FBtr0087860,FBtr0087858,FBtr0087859	2	3	3	69	2R	8647677	8647695	CAGATGTGTACAAGAACCC		57	8647626	8647644	GACAGATCCTCGATCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vis	FBgn0033748	FBtr0087944	2	1	2	137	2R	8396496	8397090	CAGTGTCATCTACAGGTCC		59	8396318	8396336	TCCTCAGTCCCAAATACAG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Lac	FBgn0010238	FBtr0087932,FBtr0087933	3	2	2	81	2R	8341113	8341131	TATCCTACATCACGCAGGA		59	8341175	8341194	TACTCTTTGGCATACTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SIP2	FBgn0061197	FBtr0089670,FBtr0089669,FBtr0089671,FBtr0089668	2	4	4	97	2R	8191550	8191640	CAGATAAGCGATCTAAGGGAG		59	8191473	8191491	ATCTTGGACACTTCCTTGC		59	NA	
Drosophila melanogaster	50	RpS11	FBgn0033699	FBtr0088005,FBtr0088007,FBtr0088006	2	3	3	126	2R	8087085	8087348	CTGTGTTCAGAGATGTTGAG		58	8086978	8086996	TTCTTGAAGCTCTTCTTGG		57	NA	
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	2	12	12	120	2R	6499213	6499231	GATTCCTGGACTTCACACC		59	6499313	6499429	TCGGTGGTATTTGATAGATCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Syb	FBgn0003660	FBtr0088362	3	1	2	126	2R	6138638	6139440	AACAACGAGAACAACAATGC		59	6138531	6138549	GTTCCGATAGCTTCTGGTC		59	NA	Nonspecific
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414	2	10	10	71	2R	5991854	5991872	TGTCGACAGTCGATAAGGA		59	5991904	5992232	TATCATCGTAACGTTCTGACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	3	9	9	68	2R	5738998	5739016	CTTTGAGTTGAATGGCCAG		59	5738880	5738966	ACATGGATCTCCTTAACGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG8170	FBgn0033365	FBtr0088665	2	1	2	87	2R	4909291	4909309	CTACAGTCTGCAGGATCTG		59	4908981	4909240	TGTGATGTCGACTTTCTCC		59	NA	
Drosophila melanogaster	50	CG8229	FBgn0033356	FBtr0088673,FBtr0088672	2	2	2	60	2R	4837923	4837944	CCTCTGATGAAGATCTGAACTC		59	4837884	4837902	AGTTCAGATTGTGGAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30497	FBgn0050497	FBtr0088932	1	1	3	83	2R	3629422	3665994	TATCCCATAATGCAGTGCG		59	3629357	3629375	CTGGTAGACGTCCATTCTG		59	NA	
Drosophila melanogaster	50	CG1942	FBgn0033215	FBtr0088928	1	1	1	119	2R	3601396	3601473	ATTGTCCAAGTTGTTGGTG		58	3601553	3601574	GTACTGATCGAATAACTTCTCC		58	NA	
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088988,FBtr0088989,FBtr0088990	2	3	9	91	2R	3362872	3362953	CAATAAATGCAGGAGATCGG		58	3361302	3361320	TTGTGATGTGAAGATCCCA		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111093,FBtr0111073	2	2	60	111	2R	3236476	3245109	ATGCCGTTCTTTAGATGGT		58	3236383	3236403	CTGCGTCCTTAATAATGAGAG		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111081,FBtr0111069	1	2	60	80	2R	3229659	3229677	GATTCTATTCGTGTCACGC		58	3219874	3229615	ATCTGGGAGGTACATTCAC		58	NA	
Drosophila melanogaster	50	CG12164	FBgn0033158	FBtr0088963	1	1	1	111	2R	3199604	3199686	GAAGGAAGTCAAGGTTCCC		59	3199761	3199779	CACCTTAACCTCCTTCCAG		59	NA	Nonspecific
Drosophila melanogaster	50	ppk25	FBgn0053349	FBtr0086169	3	1	1	81	2R	2838479	2838498	AATCATTACTGAGGTGGGTC		59	2838542	2838726	CTGTGTTTCTAGTTTGCCG		59	NA	
Drosophila melanogaster	50	CG34212	FBgn0085241	FBtr0112405	3	1	1	71	2R	1937592	1937610	GTGTTTCTACTTGGTGGTC		57	1937539	1937557	AGGATGAAGCAACCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40130	FBgn0058130	FBtr0111295	3	1	1	144	2R	284512	294007	ACCACTAGGAATCCTTTACG		58	294325	294343	CGAAGAATACCAGTGGTCC		59	NA	
Drosophila melanogaster	50	CG41439	FBgn0084005	FBtr0111228	1	1	1	60	2L	22243507	22243526	TCTTAGTGGAGAATGAGCCT		59	22243466	22243485	ATGACATATCGATCGTTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	crc	FBgn0000370	FBtr0100139,FBtr0081512	2	2	3	89	2L	21312033	21312106	CTTTGCAAATGGCATTACTC		57	21312158	21312176	ATCTCCTCATCACTAAGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	Ret	FBgn0011829	FBtr0081496,FBtr0081494,FBtr0081493,FBtr0081492,FBtr0081495	1	5	5	88	2L	21184334	21184355	GAGCCTGTTAATGTTAAGATGG		59	21184212	21184288	CGATGAACCAACTTTAACTCAG		59	NA	
Drosophila melanogaster	50	CG31675	FBgn0051675	FBtr0081429	3	1	1	164	2L	20868504	20868524	GTTTGAAACGGGTATTCAAGG		59	20869242	20869260	ATCCGTTGCAGTAGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	lok	FBgn0019686	FBtr0081328	1	1	3	121	2L	20061955	20061973	ATGGAGAAGATAGTCTGGG		57	20062058	20062160	TCGTTGTTGAGATCAACAG		57	NA	
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0100316,FBtr0100313,FBtr0081020,FBtr0081016,FBtr0081013,FBtr0081015	2	6	12	102	2L	17651480	17655677	TCATACTGATACTCGTCTTGG		58	17651398	17651416	TTGATGATATTCTCGCGCA		59	NA	
Drosophila melanogaster	50	CG15144	FBgn0032648	FBtr0080992	2	1	1	91	2L	17528321	17528339	AGTTGAAGAACAAGTGCGA		59	17528190	17528268	AGAAGATTCCCTATAGAGGGT		58	NA	
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976	2	4	6	108	2L	17394484	17400407	CTTATACAGATAACAGCAGCG		58	17400477	17400495	CCAATGAAGGCAATCTGTC		58	NA	
Drosophila melanogaster	50	Cas	FBgn0022213	FBtr0080930	1	1	1	93	2L	16823561	16823650	AGTACGATTCGTTGGTCTC		59	16823486	16823504	AGAATCTCTGGGTTCTCGA		59	NA	
Drosophila melanogaster	50	mdy	FBgn0004797	FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917	2	4	4	87	2L	16820785	16820804	CATAACGCCCTAATCCTGAG		59	16820919	16825419	CAATTATTTCCATGGCTAGACC		59	NA	
Drosophila melanogaster	50	trpgamma	FBgn0032593	FBtr0080946,FBtr0080945,FBtr0114470	1	3	3	80	2L	16665213	16665232	CGAGCAAGAATATTTGTCCG		59	16665101	16665173	GCTTAAGGGTCTTATCATTCAG		58	NA	
Drosophila melanogaster	50	mol	FBgn0086711	FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015	1	5	5	162	2L	14977342	14977360	TATGAAGGCTTTGACAGGT		58	14977067	14977217	AATAAAGCAGAGAATGCCTG		58	NA	
Drosophila melanogaster	50	CG3491	FBgn0028887	FBtr0080675	2	1	1	132	2L	14929652	14929727	CTAGCCAAATACCGAAAGGA		59	14929822	14929840	TTCCGTTTGATACATCCGA		58	NA	
Drosophila melanogaster	50	CG4480	FBgn0032553	FBtr0080684	2	1	1	60	2L	14871561	14871579	TCTATCACTACAAGCCGGA		59	14871453	14871473	GCCCAATAAACCTTTATCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	smi35A	FBgn0016930	FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289	3	5	5	91	2L	14195795	14195814	CGGATGGATCTCATAATGTC		57	14189224	14195741	CAGGTTCAAGCTCATTAGC		58	NA	
Drosophila melanogaster	50	RpL24	FBgn0032518	FBtr0080524	3	1	1	72	2L	13394263	13394282	CTATCAAGCTTGGCTTACAG		58	13394210	13394229	TGATGATTCATGACGTACAC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG5458	FBgn0032478	FBtr0080437	3	1	1	60	2L	13183857	13183875	ACAGAGACAAGGTAGAGGT		59	13183895	13183917	GTAGTTCCCATCATACTGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pk34A	FBgn0028410	FBtr0080432	3	1	1	60	2L	13159376	13159394	TCAATGTCCGCATACTCTC		59	13159415	13159436	CCCAATAGATGAAGATATCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17036	FBgn0032449	FBtr0080408	3	1	1	60	2L	12700288	12700306	GGTACAAACCGGTTATCGT		59	12700246	12700264	ATAAGCATGGAGAACAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bru-2	FBgn0043904	FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351	3	4	4	139	2L	12385726	12389193	ATTGGAGCTATAAAGGCCC		59	12389295	12389314	GTATTGATGCCACAGAATGC		59	NA	
Drosophila melanogaster	50	CG31862	FBgn0051862	FBtr0080350	1	1	1	60	2L	12339354	12339372	ATAAGGACACTGACAAGGA		57	12339395	12339414	AACAAATCGATGATATGGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16997	FBgn0032413	FBtr0080335	3	1	1	60	2L	12111331	12111350	ATTAATTCCAACTGGCTGGT		59	12111370	12111391	CAAGTACTTGATTCCTATTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-thr	FBgn0027081	FBtr0080333,FBtr0080332,FBtr0080331	2	3	3	63	2L	12104541	12104694	ATACTCGCAAGGAACTCAG		59	12104721	12104739	TTCTCCCAGAAGACATTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG6555	FBgn0032367	FBtr0080270	1	1	1	60	2L	11591617	11591636	CACCATTATCCTGTTTCTGG		58	11591576	11591595	GTCTGGAAGTACACTTTCAG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	salm	FBgn0004579	FBtr0089913	1	1	1	80	2L	11436265	11436283	AAGCAACACATGCTAACTC		58	11435916	11436223	CTCACTCATATACTTTACGGC		58	NA	
Drosophila melanogaster	50	w-cup	FBgn0032269	FBtr0080132	2	1	1	60	2L	10577061	10577079	TACCATCATACCGCAATCC		59	10577019	10577037	ACTTGCCTCCATTTGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5390	FBgn0032213	FBtr0080064	1	1	1	80	2L	10304764	10304840	CAGTAGCATTGTTGTGAGAG		58	10304703	10304721	TTGACATATCGGTCTTCGT		58	NA	
Drosophila melanogaster	50	RpL13	FBgn0011272	FBtr0079888,FBtr0100164	1	2	2	170	2L	9968212	9968230	GAGAAGAAGTTCAAGGCCT		59	9968433	9968451	GTAGACAGAACGATCAGGT		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Oatp30B	FBgn0032123	FBtr0079827,FBtr0079828,FBtr0079826,FBtr0079825	2	4	4	83	2L	9537728	9537811	GCATATGGATTATTGCTACGAC		59	9537854	9537873	TTCTTAGACTTGGTCTGTGG		58	NA	
Drosophila melanogaster	50	CG32982	FBgn0052982	FBtr0079771,FBtr0110960,FBtr0079772	3	3	3	170	2L	9156575	9161131	TGGGACAGTTTATCTTCAAGG		59	9161263	9161397	TCATTGTGCATTCCTCCAG		59	NA	
Drosophila melanogaster	50	CG9555	FBgn0032085	FBtr0079761	3	1	1	91	2L	8992784	8992859	TTTATCCTTCCATGCCAGG		59	8992912	8992932	CATAAAGCAATCGAAGACCAG		59	NA	
Drosophila melanogaster	50	mus201	FBgn0002887	FBtr0005674,FBtr0005673,FBtr0100473	1	3	3	111	2L	8440832	8440850	CAGTGATGAGGAAGTTTCG		58	8440925	8441035	TTTGATAATCTCCTCCGGA		57	NA	Nonspecific
Drosophila melanogaster	50	CG14534	FBgn0031957	FBtr0079563	2	1	1	89	2L	7860409	7860427	GTCTACGTCCATGTACCTC		58	7858882	7858900	GATCTTGTAGTGCTTCTGC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG4502	FBgn0031896	FBtr0079417,FBtr0079416	3	2	2	68	2L	7196232	7196327	ACGACAAGATCACAAGGTG		59	7196182	7196200	CGAATCGTATGATCCGGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3476	FBgn0031881	FBtr0079389	2	1	1	108	2L	7028578	7028596	ATCAACTATTCTGTCCGGC		59	7028728	7028746	CTTGTATGTTCCCTCAGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	homer	FBgn0025777	FBtr0079307,FBtr0079306,FBtr0110778	3	3	3	137	2L	6722249	6722267	ATAAACTCGACGATCACAC		57	6722075	6722148	CTTCTCTACGAACTTGGTC		57	NA	
Drosophila melanogaster	50	homer	FBgn0025777	FBtr0079307,FBtr0079306,FBtr0110778	2	3	3	137	2L	6722248	6722266	TAAACTCGACGATCACACC		59	6722074	6722148	ACTTCTCTACGAACTTGGTC		59	NA	
Drosophila melanogaster	50	GRHR	FBgn0025595	FBtr0079308,FBtr0079310,FBtr0079309	3	3	3	99	2L	6713835	6714562	GTGTACAGCATACTGTTTGTG		59	6713756	6713775	TGATATCAATACGCAAGGGA		58	NA	
Drosophila melanogaster	50	CG9531	FBgn0031817	FBtr0079270	3	1	1	102	2L	6466888	6466907	CTGAAGGACAAGAAGTACGA		59	6466751	6466824	TAAGGTTCTCATACACCACG		59	NA	
Drosophila melanogaster	50	CG9486	FBgn0031791	FBtr0079243	3	1	1	61	2L	6256175	6256196	GGACAAGATACACAAGTTTCTG		59	6256216	6256236	CGTAGTGCTTGAAGATATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15393	FBgn0031429	FBtr0077784	1	1	1	203	2L	2490014	2490032	TCTAGGCACCCATTAACAC		58	2489829	2489847	TAGTGCTAATTGCTGGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpp	FBgn0000490	FBtr0077774,FBtr0077772,FBtr0077775,FBtr0077771,FBtr0077773	1	5	5	60	2L	2458369	2458387	GACCACTTTAACTCGACCA		59	2458410	2458429	CGGGATTCATATTGTTGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15387	FBgn0031403	FBtr0077841	2	1	2	70	2L	2226059	2226077	GATTCTCATGATGCAGCAC		58	2225950	2225968	ACCCATGACCCTTAATGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Got2	FBgn0001125	FBtr0077868,FBtr0100359,FBtr0077867	2	3	3	82	2L	1985509	1985527	TACTACGACAAGGACACCT		59	1985376	1985394	AGAACAATGCTCTTCTCGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG17646	FBgn0031362	FBtr0077886,FBtr0077885	3	2	2	94	2L	1747846	1748777	CTGTGGTCTTGACATTTCC		58	1748834	1748853	GATCAACGAGAGGAAGTAGG		59	NA	
Drosophila melanogaster	50	smi21F	FBgn0016926	FBtr0077988	2	1	2	167	2L	1118689	1118707	TTGTCTAGCTTACGCAAGG		59	1117491	1117509	GATCGACATATTGGCTGCT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4341	FBgn0028481	FBtr0077949,FBtr0112936	2	2	2	96	2L	956936	957062	ATCATTATGCCGAATTCCTC		57	957121	957139	AAAGTATAATCGTTGGGCG		57	NA	
Drosophila melanogaster	50	dock	FBgn0010583	FBtr0078013,FBtr0078015,FBtr0078014	1	3	3	101	2L	831534	831552	TATTATGGAGCCATCACCC		58	831616	831722	GTCTCCCATGTTAGTCTCAC		59	NA	
Drosophila melanogaster	50	alpha-Adaptin	FBgn0015567	FBtr0089488,FBtr0089489	2	2	2	81	2L	411176	411194	TATTCGTGAGGAAATGGTG		57	411045	411131	GATAACGTCCACATACCAG		57	NA	
Drosophila melanogaster	50	alpha-Adaptin	FBgn0015567	FBtr0089488,FBtr0089489	1	2	2	80	2L	411178	411199	TACTCTATTCGTGAGGAAATGG		59	411051	411140	GTCCACATACCAGGTATAATCC		59	NA	
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	2	7	8	166	2L	119224	119295	TAATGCAGACTGATGTCCTG		59	119020	119038	TTGAGCCATGGTGTTTAGG		59	NA	
Drosophila melanogaster	50	RpS10b	FBgn0031035	FBtr0074731,FBtr0074732	1	2	2	62	X	19492231	19492477	CAATCCAGAATGTTTATGCC		57	19492502	19492520	CTCCTTGAAGAGGTACTCG		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG8661	FBgn0030837	FBtr0074444	3	1	1	132	X	17178388	17178468	TTGCGTAAATGCATTGGTG		59	17178274	17178295	GATCTTTAGGGATTTGTAGGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5070	FBgn0030824	FBtr0074389	1	1	1	74	X	17097390	17097408	GGATCTGGCTATGGATCAG		58	17097446	17097464	TACCTTGATCACCTTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4949	FBgn0030813	FBtr0074381	3	1	2	63	X	16973030	16973107	AATTTGGCAAAGCTATGCG		59	16973133	16973152	GACTGGTGATCAGTAAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAP15B	FBgn0030808	FBtr0074378,FBtr0110990	3	2	2	80	X	16847421	16847439	TTGATCTTCGTAAGCGAGG		59	16847482	16847560	ACTCTCCTTTAGCACTATGC		59	NA	
Drosophila melanogaster	50	CG4678	FBgn0030778	FBtr0074320,FBtr0074319,FBtr0100450	1	3	3	82	X	16603629	16603647	TTACGCTGGAGATATCCTG		58	16603691	16603777	GATAAGTGACAGCTGATTGTC		58	NA	
Drosophila melanogaster	50	CG1764	FBgn0030467	FBtr0073796	2	1	1	89	X	13189128	13189207	TTCCAGAAGCCTACAAGAC		58	13189057	13189075	GACCACTGGAATATTGGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10353	FBgn0030349	FBtr0114451,FBtr0114452	1	2	2	80	X	11773136	11773154	CATCCCTATAAACGTCCCA		58	11773013	11773095	GATAATGTTCTGGTAGATGACG		58	NA	
Drosophila melanogaster	50	Gga	FBgn0030141	FBtr0071363	1	1	1	127	X	9496702	9496789	CTTGTAGCTGACACTCTGG		59	9496880	9496898	CTAGCTACTGTTGGAGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	sws	FBgn0003656	FBtr0071126,FBtr0071125	3	2	2	111	X	7852386	7852406	GCTCTACAAGAAATGGAATCC		58	7852235	7852313	TTTGACCTCCTCTAGTTGG		58	NA	
Drosophila melanogaster	50	Act5C	FBgn0000042	FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822	2	4	4	112	X	5797605	5797623	AGGATCTGTATGCCAACAC		59	5797699	5797717	CTTGATCTTCATGGTCGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL35	FBgn0029785	FBtr0070800,FBtr0070801	2	2	2	184	X	5566554	5567047	TGGTGAAGGTTAAGTGCTC		59	5567277	5567295	GTGCATCACAATGTAGACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17758	FBgn0029780	FBtr0070855	2	1	1	130	X	5547888	5547988	TATCGTTTCCATTCGACCAG		59	5547777	5547795	CTATCAACCTCCTCAACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ctp	FBgn0011760	FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704	2	4	4	184	X	4585720	4585738	AGTGAAGTTGTAAGCACAC		57	4592338	4592356	CTCCTTCTTGATGTAGGCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG2662	FBgn0024993	FBtr0070478	2	1	1	82	X	2592941	2592959	CAACTTGTTCCGTATCGGT		59	2593005	2593088	CTGTTTGGGTTTCTTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14805	FBgn0023514	FBtr0070312	2	1	1	80	X	1772160	1772178	CTAGGGTGTATGTTGGCTC		59	1772222	1772297	GGTGATATTCCTTCATGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4293	FBgn0024983	FBtr0100475,FBtr0070090,FBtr0070089,FBtr0100476	1	4	4	109	X	422505	422584	AAACTAGATTCAGAGCGCA		58	422414	422432	AAGGTTACTAGGTGATCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG40813	FBgn0085521	FBtr0113934	1	1	1	106	U	3136482	3136500	TATCCAACATACCCAAGCA		58	3136570	3136661	ATGATGCTTACTTGACTGC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11155	FBgn0039927	FBtr0089193,FBtr0089195,FBtr0089194	3	3	3	115	4	1147554	1147632	AGTAATACGAGTAGGTGCC		58	1147710	1147729	GTGTATTGGGAAGAAGAGTC		57	NA	
Drosophila melanogaster	50	pncr002:3R	FBgn0063127	FBtr0091948	1	1	1	60	3R	2525772	2525793	CAATTATTCTGGATACAGCCTG		58	2525633	2525754	GTTAAATCTCTACGTATCTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3669	FBgn0039838	FBtr0113313	3	1	1	87	3R	27085019	27085039	AGTATGGAGATATCGATGAGG		58	27085088	27085396	CGATTGGGATTCTTTACGA		57	NA	
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0113385,FBtr0084927	2	7	7	110	3R	21527327	21527345	AACCAGGTCCACAAATCTG		59	21527166	21527253	GACATAGATGACGCTTGCT		59	NA	
Drosophila melanogaster	50	CG5079	FBgn0039346	FBtr0084883	2	1	1	75	3R	21439880	21439898	CATCTCATCAGGAAGTGCA		59	21439937	21439955	TTTGCTGTCTGAAGTTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nAcRbeta-96A	FBgn0004118	FBtr0084682,FBtr0084681	2	2	2	80	3R	20337253	20337274	TCTCTTTACCATGATACTCGTC		59	20336936	20337215	GTAGATGGAGATCTGAAATGGA		59	NA	
Drosophila melanogaster	50	Mpk2	FBgn0015765	FBtr0084581	2	1	2	169	3R	19977710	19977825	CAATGATATGCGCATTCGT		59	19977483	19977579	GTATTGATTCTCTGTTCCACG		58	NA	InUTR
Drosophila melanogaster	50	wfs1	FBgn0039003	FBtr0084334	1	1	2	124	3R	18515891	18515968	TTGGAATCTGGAAGATCGT		58	18515728	18515803	GATTGGGCTCTACTATGGA		57	NA	
Drosophila melanogaster	50	CG15499	FBgn0038891	FBtr0084124	2	1	1	178	3R	17357664	17357761	GATGAAGGTGTGGAAACGA		59	17357357	17357378	CCAGACAATTATGGATTAGAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	cdc2c	FBgn0004107	FBtr0083921,FBtr0083922	2	2	2	87	3R	16562576	16562594	GACCAAGTTCCCTAGATGG		59	16562643	16562718	GCACAGCATTGACATTATGAG		59	NA	
Drosophila melanogaster	50	CG14357	FBgn0038204	FBtr0082913	2	1	1	89	3R	9937625	9937643	GATCAATTACGGAACCCTG		57	9937469	9937572	TTTCTAGTGATTCCCACGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10148	FBgn0038120	FBtr0082713	1	1	1	112	3R	8957168	8957186	TAAAGGAGTTGGATGCCAG		59	8956964	8957095	CTGTATAACCTTTACCTTGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31358	FBgn0051358	FBtr0082554	2	1	1	84	3R	7856788	7856806	AACTTTCCCTGGAAATCCA		58	7856667	7856740	ATCTCCATCAAGTCCACTC		58	NA	
Drosophila melanogaster	50	CG33654	FBgn0053654	FBtr0091633	2	1	1	79	3R	5408730	5408748	TAAGGTCTGCAAATCGGAG		59	5408577	5408687	TCTGTAGCCGTTAAATCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7352	FBgn0037581	FBtr0081842	1	1	1	128	3R	4174219	4174237	GTGACTTAGTCCAGAAGCA		58	4174328	4174401	TTTCGATTTCTAGGACTTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Snm1	FBgn0037338	FBtr0078688	1	1	1	81	3R	1382370	1382388	TGCTAACAGAAGATCGCAG		59	1382433	1382508	AAGTAATCGACTAGGCTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5262	FBgn0036988	FBtr0078230	3	1	1	134	3L	20422717	20422738	GGCGACACTATTCTTTAATGAG		59	20422478	20422623	TTTGTTTGGTCACATACGAC		58	NA	
Drosophila melanogaster	50	CG17147	FBgn0036954	FBtr0074824	3	1	1	156	3L	20216996	20217403	CTAACCTCAAACTTGGAGTG		58	20217521	20217540	TAGCACTGAATGTACTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mus304	FBgn0002901	FBtr0075122	2	1	1	76	3L	18105427	18105445	TCATATGCAACTGGTGGAG		59	18105550	18105569	CAGTTGGTTTAACAAACGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4877	FBgn0036624	FBtr0075386,FBtr0075387	1	2	2	80	3L	16382654	16382673	TGCTAGATAGCAATCCAGAC		58	16382716	16382792	CCATGTCCTGGTTACTGTC		59	NA	
Drosophila melanogaster	50	retinin	FBgn0040074	FBtr0075375	2	1	1	111	3L	16325081	16325158	TGTCTAGATTGTTCCTGCC		58	16325233	16325251	GACTTGACCGAACTGAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33795	FBgn0053795	FBtr0091799	2	1	1	117	3L	16164133	16164151	AAAGAATATCGACGGATGC		57	16163979	16164055	GTTTACATAGAAAGGGCAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	cp309	FBgn0086690	FBtr0099993,FBtr0099992	3	2	2	90	3L	15060072	15060613	TACTCAGCAGAGAAGTCCT		59	15060000	15060021	GTTATTGGTGGGTAGATTTGAG		58	NA	
Drosophila melanogaster	50	CG10732	FBgn0036365	FBtr0075851,FBtr0075852	1	2	2	143	3L	13437172	13437316	AGGAAAGTTGTAGAGACGA		57	13437485	13437503	TAGGGACTGAATGGATTGG		58	NA	
Drosophila melanogaster	50	CG11279	FBgn0036342	FBtr0075887	2	1	1	80	3L	13040390	13040408	CGTTATTTCGAAGTCGGTC		58	13040452	13040470	TTGCTCAACTGGATGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13675	FBgn0035845	FBtr0113152	1	1	1	80	3L	8154323	8154341	ATCAGAGCAACTCTACCAG		58	8154174	8154280	TGTTGCTGTTGATCATTCAG		58	NA	
Drosophila melanogaster	50	CG8647	FBgn0035729	FBtr0076902	1	1	1	297	3L	7005380	7005847	TCCATTAAAGATGCCCTGG		59	7006108	7006126	TGTAGCTGTTCTTCACGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr65Av	FBgn0052405	FBtr0077024	2	1	1	73	3L	6132845	6132866	CATACTAAGATACGACAACGAC		58	6132683	6132701	TAACTCCATCACTGGTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14995	FBgn0035497	FBtr0073272,FBtr0073274,FBtr0073271,FBtr0073273	1	4	4	80	3L	4098073	4098091	AAATCTTCCGAGTCTCAGG		58	4097790	4098029	ACGATCGAACGATAGTTGG		59	NA	
Drosophila melanogaster	50	CG14977	FBgn0035469	FBtr0073158	3	1	1	66	3L	3897079	3897153	ATCTCACAGAGACCATCGA		59	3897182	3897201	TAATCGATGGTGATCCTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13925	FBgn0035291	FBtr0072838	2	1	1	75	3L	1921868	1921887	ATTCTCAAGTTCAGTGTCAG		57	1921922	1922087	CTATCTCATCGACATTTCTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2790	FBgn0027599	FBtr0072409	3	1	1	87	2R	20835324	20835342	TTTATCCTACGCAAGGTGG		59	20835194	20835273	TGACTAAGTTGCGAACCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10904	FBgn0034945	FBtr0072205	3	1	1	60	2R	19857147	19857165	CTGTTATAGAACCACGACC		57	19857042	19857124	TTCGATACCAATTTCTTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30411	FBgn0050411	FBtr0072016	2	1	1	73	2R	19303765	19303783	GAAGATGTTTACCTGACGC		58	19303819	19303901	TAGTTATCGCTGGCTTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18067	FBgn0034512	FBtr0086216	3	1	1	63	2R	16422045	16422063	TGGAGCTTGGATTCTACTG		58	16422090	16422169	TATATTCGCAGCGCTAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp57c	FBgn0034509	FBtr0113099,FBtr0086292	1	2	2	78	2R	16391213	16391293	GGTCTCCATACAGAGTCTC		58	16391335	16391353	CTGGCTGATGTTATTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	UbcD10	FBgn0026316	FBtr0089553	1	1	1	60	2R	13676435	13676453	GCATCGAGATCAACTTTCC		58	13676393	13676414	GTCTTAAAGTTAATCTTGGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syn2	FBgn0034135	FBtr0087093,FBtr0087095,FBtr0087096,FBtr0087094,FBtr0087097	2	5	5	86	2R	12443282	12443356	GACGCATTTACAGATGAAGC		59	12443405	12443423	ATGACACCTTCATTCACCC		59	NA	
Drosophila melanogaster	50	mRpS16	FBgn0033907	FBtr0087578	3	1	1	139	2R	10060919	10060937	AATCATACGTTTCGTACGC		58	10060733	10060751	GTTCGTTGTAATCGTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13353	FBgn0033896	FBtr0087600	2	1	1	160	2R	9978283	9978594	AGGTGTTCATCATAGTGCG		59	9978715	9978736	GATGGTGATGTAAATGAACCAG		59	NA	
Drosophila melanogaster	50	Cp1	FBgn0013770	FBtr0087592,FBtr0087591,FBtr0087593	3	3	3	168	2R	9849824	9854260	GAATGGCATACGTTCAAGC		59	9854392	9854410	AATCGGCGTACTTATTGAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG33775	FBgn0053775	FBtr0091776	2	1	1	83	2R	8451991	8452011	GCTATATCGTTTCAAGGACTC		58	8451870	8451947	AATGTCGTGGTTATATGGAC		57	NA	
Drosophila melanogaster	50	CheB42a	FBgn0053348	FBtr0086168	1	1	1	214	2R	2837258	2837328	GGTATTTGGTCAAGTCTATCG		58	2837564	2837582	TCAAGTCCAGTTCGTAGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7845	FBgn0033059	FBtr0086023	1	1	1	62	2R	1962596	1962614	TGGACAATGAATACGAGGA		57	1962489	1962570	ACTCATTATCGCTGTCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	vlc	FBgn0010633	FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039	1	4	4	105	2R	1591797	1591817	CCAGATATCTCCGAAGATACC		58	1591884	1591954	TATTGTGGCAAAGACCCTC		59	NA	
Drosophila melanogaster	50	CG9253	FBgn0032919	FBtr0081468	3	1	1	258	2L	21143567	21143585	CTCAATGAGGCTTTGTGTC		58	21143807	21144014	TACCAAGGGCTTCAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hr38	FBgn0014859	FBtr0081397	3	1	2	150	2L	20688576	20688594	CTTCAATGCCATCAATGCC		59	20688325	20688464	CGAGTTGTAGTTATGTTGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2493	FBgn0032864	FBtr0081363	2	1	1	60	2L	20462665	20462683	AAACTCTTCGAGACTCTGG		58	20462623	20462641	GGAATGCATCCGATATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10194	FBgn0032790	FBtr0081285	1	1	1	60	2L	19489642	19489723	ATAAGAAATCGCTGGATCCA		58	19489601	19489619	TCGAAGGTTTCTCGTATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)37Cb	FBgn0086444	FBtr0081163	1	1	1	115	2L	19126464	19126482	GTACAAGAAGCAACTGCTG		59	19126307	19126385	CGTATTCAGATCGCTCTCC		59	NA	
Drosophila melanogaster	50	CG10561	FBgn0002036	FBtr0081155	1	1	1	279	2L	19114566	19114642	GCCAAGTTTGGAATTAGACAC		59	19114945	19114963	GTTATCCGCCTGTAGAACC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	BicC	FBgn0000182	FBtr0080805,FBtr0080804,FBtr0080803	2	3	3	163	2L	16045385	16045854	ATGTTCAGGTCATATTCTCCAC		59	16046038	16046056	CTCCATCTGGACATTCACC		59	NA	
Drosophila melanogaster	50	Tap42	FBgn0051852	FBtr0080466	1	1	1	60	2L	13367803	13367822	AGCTAGAAGTTACCGAACTG		59	13367844	13367933	GCAGTCTTCACTTTGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gyc32E	FBgn0010197	FBtr0080223,FBtr0112856	3	2	2	81	2L	11141213	11141232	AAGATTCACAAGAAGAGCGT		59	11141089	11141169	TATTCTCATGTCGCACCTC		59	NA	
Drosophila melanogaster	50	CG5045	FBgn0032229	FBtr0080000	1	1	1	60	2L	10357401	10357422	GAATAATGATACATCAGCCCTC		58	10357498	10357517	TGTATTAGGATGTCTGTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Akap200	FBgn0027932	FBtr0079664,FBtr0079667	2	2	4	70	2L	8429454	8430290	AACAACAAGGTGGATCTCG		59	8430324	8430342	TCCTGTGTTGTAACGTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8460	FBgn0031996	FBtr0079586	2	1	1	60	2L	8197810	8197886	GAACGGTTAAAGTGTTTCCC		59	8197909	8197927	AGCTTAATGTCCCGATCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Gs1l	FBgn0019982	FBtr0110812	1	1	2	161	2L	4456511	4456734	GCAGATTACGTTTAGGAAACG		59	4456060	4456388	TATATCCTCTCCGTGTCCA		58	NA	InUTR
Drosophila melanogaster	50	Acp24A4	FBgn0051779	FBtr0110767	1	1	1	73	2L	3693707	3693794	GAAATCTGTGGATTACCCG		57	3693652	3693670	TGAGCATCATAAGACCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8851	FBgn0031546	FBtr0077526,FBtr0077527	2	2	2	69	2L	3521306	3521383	CAGGATCAGAAGTACAAGC		57	3521416	3521434	TATCTCCAGAGTCCCTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3238	FBgn0031540	FBtr0077569	1	1	1	281	2L	3469212	3469230	TATTCTTCACCGGTTCAGC		59	3468897	3468967	TCTCAAAGAACTGTCCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15387	FBgn0031403	FBtr0113015,FBtr0077841	2	2	2	60	2L	2226103	2226122	CTCGAAGAAACTCTCAGAGG		59	2226062	2226082	CTGCATCATGAGAATCATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:HPsi	FBgn0011877	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tty	FBgn0015558	FBtr0077225,FBtr0077224	3	2	2	100	X	21207803	21207822	AACGATGAGATCTACCTGGA		59	21207428	21207447	CGGGTCATGAGATAGAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089658,FBtr0089660,FBtr0089662	3	3	7	103	X	17824694	17824712	AATTACTTCTATCACCGCG		57	17824461	17824627	AAATGTTGACCTAGTGCAC		57	NA	
Drosophila melanogaster	50	CG8211	FBgn0030858	FBtr0074480	3	1	1	106	X	17547784	17547868	ATGGAGGTGCTAAGTTGTC		59	17547696	17547714	TTGAGATAGGTCTTCGAGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Traf3	FBgn0030748	FBtr0074275,FBtr0074274,FBtr0074273	3	3	3	145	X	16310576	16310596	CCAGTGTCCAGAATATAAGGG		59	16310758	16310836	TATATCCAGCCGTAGAGCA		59	NA	
Drosophila melanogaster	50	CG32642	FBgn0052642	FBtr0073713	3	1	1	60	X	12853352	12853370	TACTCCTGACATTCGTCCT		59	12853392	12853412	TCACTATACCAATCGTAGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Klp10A	FBgn0030268	FBtr0073478,FBtr0073475,FBtr0073477,FBtr0073476,FBtr0073479	2	5	5	152	X	11027593	11027611	TAATGGAAAGGTGCAGGAC		59	11027383	11027477	AGAAGATCGAAGACCTTGC		59	NA	
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475	3	6	7	170	X	10173218	10217611	GAAGGTCAAAGAGATGATGG		57	10173067	10173085	AGTCCCATAATGTACAGGG		58	NA	
Drosophila melanogaster	50	CG1354	FBgn0030151	FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386	1	4	4	96	X	9674840	9674858	CCGAATACGATTCGATGCT		59	9674918	9675202	AAGGCCTCAATATCATGGG		59	NA	
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	2	8	8	173	X	6579447	6579465	ACAACGTCTTCCACTACAG		59	6579602	6579683	AATTCGCTGGAGAAGTCAC		59	NA	
Drosophila melanogaster	50	CG18166	FBgn0029526	FBtr0070096	1	1	2	244	X	374490	374958	CCTCACAAGTGGACTATCG		59	374264	374282	CAATGGCGTTTCCTTAACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131	2	5	5	80	4	370302	370370	GATTCACCGCTTAAAGCAG		59	370240	370259	CTCAGTTGCTAATGCAAGTG		59	NA	
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100337,FBtr0100340,FBtr0100339,FBtr0085093	2	4	9	71	3R	22699812	22699830	CATGAATCCTTACTCGGCA		59	22699705	22699723	TTGTAGCCCGTATATGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31099	FBgn0051099	FBtr0084856	2	1	1	121	3R	21135543	21135563	CCTCAAAGCTCTTAATTTCGG		59	21135389	21135407	TCATCATCGTTATGGGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13624	FBgn0039209	FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795	2	6	6	125	3R	20386538	20386624	TAAGGTGTACAAGCACAGTG		59	20386432	20386450	GTCATGTCATTGATGGTGC		59	NA	
Drosophila melanogaster	50	Plip	FBgn0039111	FBtr0084454,FBtr0084453	2	2	2	111	3R	19584916	19584934	CTAAGTTCCTCCTACCAGC		58	19585008	19585089	ATCCGTTCTTCATCATGAGG		59	NA	
Drosophila melanogaster	50	CG5802	FBgn0038863	FBtr0084017,FBtr0113259	1	2	2	80	3R	16965292	16965420	GTATTTACAGGTGAGGCCA		58	16965463	16965482	AGCTATCAGCGATAAATGGG		59	NA	Nonspecific
Drosophila melanogaster	50	PKD	FBgn0038603	FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592	1	4	4	196	3R	14131625	14132352	AGCAGCTCACTGAATATCC		59	14131447	14131465	GTATTGTACTGGCAGTCCC		59	NA	
Drosophila melanogaster	50	Taf12	FBgn0011290	FBtr0082442,FBtr0082440,FBtr0082441	3	3	3	71	3R	7504487	7504505	GATCATCGACGACTTTGTC		58	7504434	7504452	TTGTTAGACTTTCGGTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp85a	FBgn0037589	FBtr0081849	2	1	1	233	3R	4246001	4246019	GGAAATTCAACTTTGCCGA		58	4245729	4245747	GGAGAGTGAATCGTCTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Osi5	FBgn0037413	FBtr0078595	3	1	1	60	3R	2054319	2054337	GGATGCTGGGTCTTAAGAC		59	2054359	2054379	TACGATATGCTGTGACTAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sec23	FBgn0037357	FBtr0078710,FBtr0078711	3	2	2	106	3R	1476885	1476903	TCGATCGTCAGTTGATTCG		59	1477041	1477059	CATGAATTGCGGGAATAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10512	FBgn0037057	FBtr0078297,FBtr0078300,FBtr0078298	3	3	4	297	3L	21199477	21199495	GATGCCATTAGGAGGATCC		59	21200564	21200583	CTTCTTCTCCTTGTCTCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fibp	FBgn0036911	FBtr0089595,FBtr0089596,FBtr0089594	1	3	3	97	3L	19809913	19809981	ATACTTACCAGCACACTGG		58	19809834	19809852	TTCCTTGTCGAGTAGACAG		58	NA	
Drosophila melanogaster	50	Eip75B	FBgn0000568	FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149	2	4	4	111	3L	17948398	17948416	AGATGGATATCGTTGGCTC		58	17948140	17948324	TTGAGTATTCCGATCTGCTG		59	NA	
Drosophila melanogaster	50	CG10741	FBgn0036373	FBtr0075810,FBtr0075811	3	2	2	180	3L	13494144	13494162	ACAGTCCCATTGACATGTC		59	13494305	13494392	ATCGCCATATCTGTAGAGTG		58	NA	
Drosophila melanogaster	50	stv	FBgn0086708	FBtr0075806,FBtr0075809,FBtr0075807	1	3	5	83	3L	13474163	13474181	GACATGGACAACATGTTCC		58	13474228	13474324	GAAACCAAAGTGTGAGTCG		58	NA	
Drosophila melanogaster	50	Tim13	FBgn0036204	FBtr0076089	3	1	1	164	3L	11767390	11767408	CTTCAAGAAGTGCATCCAG		58	11767244	11767262	ATCTCCAACGATTCCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385	3	8	8	114	3L	9825956	9826035	GAGTTAACCGGGACTACAC		59	9826112	9826131	AGTCTTTCCCAAACTTAGCC		59	NA	InUTR
Drosophila melanogaster	50	CG33700	FBgn0053700	FBtr0091688	3	1	1	125	3L	9507484	9507567	CCTGTCCATATGATCACGA		58	9507377	9507398	GATATTCCTTGTCAAATGCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Idh	FBgn0001248	FBtr0076673	1	1	9	265	3L	8353429	8353447	CATCCACCTGATTCTCCAG		59	8350919	8350937	TTGGCTCTTAATGGAGTCC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	bin	FBgn0045759	FBtr0076900	1	1	1	87	3L	6986012	6986030	CCAATGGATACTACGCCAG		59	6986151	6986170	TAATCGTAGCTAGCAAAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10144	FBgn0035704	FBtr0076986	2	1	1	81	3L	6485923	6485943	GGATTATCAATCTGCTACTGG		57	6485805	6485823	GCAATGAAGTTTAGCAAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG32398	FBgn0052398	FBtr0076988	1	1	1	64	3L	6362060	6362078	TTTGTATATCTGGGCAGCC		59	6362014	6362032	CATTTCTATGGCTTTCGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33353	FBgn0053353	FBtr0086345	1	1	1	62	2R	15653744	15653762	AATACATCGGTTCTCGTCC		59	15653700	15653718	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	aPKC	FBgn0022131	FBtr0110997,FBtr0110995	2	2	6	80	2R	10834737	10834755	AGATCCCTATGTGACAAGC		58	10834100	10834694	ATGACATGAGGATCATCTGG		58	NA	
Drosophila melanogaster	50	Nmda1	FBgn0013305	FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876	2	6	6	91	2R	8765640	8765660	CGAACTTCATATTCTTGGGTC		58	8765511	8765587	CATGAGAACCTCTTTCGGA		58	NA	
Drosophila melanogaster	50	CG13185	FBgn0033661	FBtr0113072	3	1	2	93	2R	7765780	7765853	CAAAGTAACTACAGAGGCAC		58	7765706	7765724	AACCTCGATGATCTTACCT		57	NA	
Drosophila melanogaster	50	ix	FBgn0001276	FBtr0088154	3	1	1	60	2R	7247105	7247125	TATCCCACTTACTTGAACACG		59	7247065	7247083	TGTCGTGTATATCCTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mef2	FBgn0011656	FBtr0088444,FBtr0088446	1	2	6	169	2R	5806556	5806959	GGATTCAGTTTATCCATCGG		58	5806291	5806309	TTAGATTGGAAGCTCGTCC		59	NA	
Drosophila melanogaster	50	hig	FBgn0010114	FBtr0100119,FBtr0088607	2	2	4	176	2R	5119323	5119341	GGAATGTGAAGTTTCAGCC		59	5118141	5118618	CCCATCCCACATTAATTTCTG		59	NA	
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	2	9	9	94	2R	4568146	4568164	AGATCAAGACCTGCTTGTG		59	4568222	4568303	GGTCATATCACGGTAGTCC		58	NA	
Drosophila melanogaster	50	Vha16	FBgn0004145	FBtr0086150,FBtr0086153,FBtr0086151	2	3	4	81	2R	2519557	2519575	CTTCTTCGGAGTTATGGGA		58	2515389	2515407	GGTACCAGACTTAGCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17528	FBgn0032999	FBtr0111275,FBtr0111277,FBtr0111274,FBtr0111276	2	4	4	83	2R	705644	705728	TGGAATATGTAAGTGGTGGT		58	705580	705598	TAATCATAATGCGCGACTG		58	NA	
Drosophila melanogaster	50	Ddc	FBgn0000422	FBtr0081167,FBtr0081166	2	2	3	71	2L	19119161	19119182	CGAATATCTGGAGAATATACGC		58	19118084	19118102	ATCAATGGCTTCAGGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CycE	FBgn0010382	FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775	1	5	5	96	2L	15729492	15729576	ACATTTAGTCGGGAGATGG		58	15729414	15729432	AGATCACTCGGAAGAATGG		58	NA	
Drosophila melanogaster	50	RfC38	FBgn0028700	FBtr0080225	3	1	1	72	2L	11129720	11129738	GATCGATCTCATCAAGCAG		57	11129666	11129684	AATCACCTTGAATTCCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Btk29A	FBgn0003502	FBtr0079616,FBtr0112836,FBtr0079617	3	3	6	168	2L	8298110	8298128	TCGATGGTTTGAGTTGACC		59	8284050	8284128	TTGGAACGGATAACCATCC		59	NA	
Drosophila melanogaster	50	Gr28b	FBgn0045495	FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458	2	5	5	118	2L	7455130	7455213	ATTGTATTTCACGATCAGCG		58	7455031	7455049	TATTGAAGGTCTCACAGCA		58	NA	
Drosophila melanogaster	50	CG10399	FBgn0031877	FBtr0079351	2	1	1	62	2L	6961369	6961387	GACAAACTGATCCAAGTGG		58	6961413	6961431	CTTGGACTCTGAGGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	halo	FBgn0001174	FBtr0077918,FBtr0114554	2	2	2	61	2L	1517929	1517947	AAGATGTCCACCATCAAGC		59	1517886	1517904	ATGTTCTTGATCGTCTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3164	FBgn0025683	FBtr0078153,FBtr0078155,FBtr0100379,FBtr0078154	1	4	4	80	2L	123790	123872	TATTACGATCCTATCATTCCCG		59	123731	123750	TAGGACTTTAGCGAGTACCA		59	NA	
Drosophila melanogaster	50	CG32857	FBgn0052857	FBtr0070052	1	1	1	102	X	21488281	21488299	GGAGAGCTTGAAGTTCCTG		59	21487146	21488215	CAATTTGGCCAAAGGACTG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG9034	FBgn0040931	FBtr0071343	1	1	1	147	X	9053866	9053942	TTGTGTACCAAGATGTCCG		59	9053737	9053755	CATAGTAGTTGGCCACTCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9657	FBgn0029950	FBtr0071057	3	1	1	66	X	7314073	7314153	ATGTTTATTGTGGCTTCGC		59	7314182	7314201	GATTGAATGCTATAGCCGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41314	FBgn0085609	FBtr0114053	3	1	1	140	U	1495088	1495106	ATTGAAATACTCGCCACAG		57	1492546	1494984	TATATTGGTCGTTGCTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9682	FBgn0039760	FBtr0085617	2	1	1	118	3R	26077222	26077240	ACAGGAGGTTTCCAATAGC		59	26077382	26077479	TCTTACTGGATTGATTGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6006	FBgn0063649	FBtr0113476,FBtr0113477	3	2	2	87	3R	11992910	11992930	TTATCTCCGGCTATTTATCGG		59	11992979	11993672	AGCCAAAGACCGAATATGG		59	NA	
Drosophila melanogaster	50	E(bx)	FBgn0000541	FBtr0072522,FBtr0072523,FBtr0072521	2	3	3	87	3L	245466	245936	GAAGGAAAGGGTACGAGTC		59	245397	245418	AGCATATCATCCTCATTATCGG		59	NA	
Drosophila melanogaster	50	Peb	FBgn0004181	FBtr0072454	3	1	1	62	2R	21064122	21064203	TTGATACTCGTCCTTTCTCTG		59	21064080	21064098	CAATTCACTGACAACAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12484	FBgn0086604	FBtr0112774,FBtr0112775,FBtr0112776	3	3	3	91	2R	16355847	16355865	GAAACAGTTGACATACCGG		58	16355920	16356314	GTACCGTAGTCATTCTCCG		59	NA	
Drosophila melanogaster	50	Psi	FBgn0014870	FBtr0087073,FBtr0087072	3	2	3	170	2R	12752526	12752604	AGAATAAGCAGAACGGATCTG		59	12752376	12752396	AATACTGTGCATACTGAGTGG		59	NA	
Drosophila melanogaster	50	CG1663	FBgn0033449	FBtr0088477	2	1	1	75	2R	5724934	5725010	CATGACTACATCTCGAACC		57	5725049	5725067	AGTACTGAATAACTCCGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cathD	FBgn0029093	FBtr0088898	2	1	1	61	2R	3710087	3710105	GGCCACCTCTATTAACCAG		59	3709981	3710062	AAACCACATACTGACCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)01289	FBgn0010482	FBtr0110900,FBtr0086137,FBtr0086136	1	3	4	88	2R	2620509	2620527	CTATTCCGAAATTCCCGAG		57	2620379	2620459	CCTTGTCGTAGAATATAACCG		58	NA	
Drosophila melanogaster	50	heix	FBgn0028375	FBtr0080852	2	1	1	90	2L	16298934	16298954	CCTATTTCGACTTCATCAAGG		58	16298186	16298882	GATACCACCTCATCCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7164	FBgn0031946	FBtr0079487	3	1	1	81	2L	7781832	7781912	TATTCACTCGACCATGAAGTC		59	7781955	7781973	ATTCGGAGTTCCAGATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR31577	FBgn0051577	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-308	FBgn0067696	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG41425	FBgn0085645	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-263a	FBgn0067722	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CR32657	FBgn0052657	FBtr0073625	1	1	1	99	X	11981403	11981422	CTTAAATACTCGCCATTGCT		58	11981542	11981560	AGTGTAGTCCAGTCATGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	FucTC	FBgn0044872	FBtr0111136	1	1	1	75	X	22411741	22411759	GACATTTACGGAAACTGCG		59	22411147	22411165	AGTCAGTGTCCAACATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	fliI	FBgn0000709	FBtr0077192	1	1	1	103	X	21214198	21214216	GTTGAGTTCTTTCACCTGC		58	21214281	21214536	AGTATGTAGCAGAAGGTTGAG		59	NA	
Drosophila melanogaster	50	CG17003	FBgn0031082	FBtr0070035	3	1	1	71	X	19895476	19895494	TTATGGCCAAACACTATGG		57	19895423	19895441	AGAAACCTTCGTAGAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14216	FBgn0031054	FBtr0074747	2	1	1	115	X	19559217	19559295	GATAAACATGATGGCCAAGTC		59	19559372	19559390	GTCGTCAGTAGAAGAGCAC		59	NA	InUTR
Drosophila melanogaster	50	Arp11	FBgn0031050	FBtr0074760	3	1	1	271	X	19539604	19539673	TTCTTCAAGCATCTACTGGT		58	19539352	19539370	TAGCTCTGATCCTTGAAGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12237	FBgn0031048	FBtr0074761	2	1	1	64	X	19536354	19536373	ATCATCAGTGACTCGAACAG		59	19536309	19536327	CAATCGGCCAAGTTATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Shawn	FBgn0031039	FBtr0074738,FBtr0074737,FBtr0074739	1	3	3	116	X	19508311	19508329	TGTTTCCTCTACTGCAACG		59	19508409	19508486	GATGAATGCGTCAATGGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG32543	FBgn0052543	FBtr0074638	3	1	1	155	X	18718960	18719045	TTAAATAGCACTTCCTCGGAC		59	18719162	18719180	AGTAAATGAGACTGACGCC		59	NA	
Drosophila melanogaster	50	Cyp18a1	FBgn0010383	FBtr0074609,FBtr0074610	1	2	2	80	X	18584393	18584411	CTTCGATGGCAAGAATCAC		58	18584228	18584246	GTCTTGATGGTTTCCATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Frq1	FBgn0030897	FBtr0074545,FBtr0100239	2	2	2	149	X	18055313	18061670	ACGGACACATACTTCACAG		59	18062480	18062498	GAGCGATGCGAATTTACTG		59	NA	
Drosophila melanogaster	50	CG32495	FBgn0052495	FBtr0089800	2	1	3	140	X	17797984	17798002	TATAGCATCGGTCTGTTGC		59	17798106	17798652	GAGTACGAATTTCTGCTGC		58	NA	
Drosophila melanogaster	50	CG32560	FBgn0052560	FBtr0113438	2	1	2	85	X	17615633	17630235	CTCTACAGTGAACTAGGTGAG		58	17630282	17630300	TCATTCAGCGATGTATCGT		58	NA	
Drosophila melanogaster	50	RhoGAPp190	FBgn0026375	FBtr0074483,FBtr0074482,FBtr0074481	3	3	3	81	X	17536385	17536403	CGAGGGCATTTATAGGGTG		59	17536257	17536343	CTCAGTATTGGTATCCTCTTCG		59	NA	
Drosophila melanogaster	50	para	FBgn0003036	FBtr0111022	1	1	3	174	X	16375502	16375520	GTACATCTGCCACAAAGAC		58	16374823	16375364	TAATTAGCGACAGCATGAC		57	NA	
Drosophila melanogaster	50	Cyp1	FBgn0004432	FBtr0074238	3	1	1	60	X	16214214	16214233	AGTTGCAGTTTGGAATTCAG		58	16214173	16214192	AAAGTACTCATCTTTGACGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3632	FBgn0030735	FBtr0112988,FBtr0112990,FBtr0112991,FBtr0112989	2	4	4	94	X	16195703	16195723	CACTATATCCTGTCCAGATGG		59	16195779	16195858	TTTCCTCACGTAGCTTGTG		59	NA	
Drosophila melanogaster	50	exd	FBgn0000611	FBtr0074136,FBtr0074135,FBtr0074137	1	3	3	92	X	15888239	15888257	ATTGGAGAAGTACGAGCAG		59	15888313	15888394	TTTGGTGTAATGGGTCTCG		59	NA	
Drosophila melanogaster	50	CycD	FBgn0010315	FBtr0074163,FBtr0074164,FBtr0074165	3	3	3	61	X	15801699	15801718	GTCTGATGACCGATCTAACC		59	15801595	15801614	CATGTGCAGCATACAATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6308	FBgn0030645	FBtr0074036	2	1	1	71	X	15366368	15366386	ACAGACAGACATCGAACAG		59	15366421	15366439	GAGGTAGAGTCACTGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HDAC6	FBgn0026428	FBtr0074009,FBtr0074010,FBtr0074008	2	3	3	161	X	15230448	15230466	CGAGTACAACGGTTATTGC		58	15230591	15230662	GAGAAGTAAACCACCCTGG		59	NA	
Drosophila melanogaster	50	CG9009	FBgn0027601	FBtr0073972	2	1	1	76	X	14829956	14829974	CGGATGACTTCATGAGGTC		59	14829468	14829916	CATAAAGAGGGCAATTGGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14407	FBgn0030584	FBtr0073989	3	1	1	127	X	14732199	14732217	TAGCTGACACTTGAACAGC		59	14732090	14732109	GAATCTGGTATCTCGGATGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	rdgB	FBgn0003218	FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194	3	4	4	84	X	13663020	13663039	CTATTATCCGGACAATGGCT		59	13663083	13663187	GTCAATTACGTCTACGATACGA		59	NA	
Drosophila melanogaster	50	CG11151	FBgn0030519	FBtr0073819	1	1	1	201	X	13633779	13633797	CTTGCTATACGACCATCCC		59	13634050	13634068	TTCTCCTTCAGTCCATCGA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	sno	FBgn0005410	FBtr0112849	1	1	4	84	X	13094927	13095640	AGGATGCATGAGTTATGCA		59	13094861	13094879	CTGATTATTCCCGACTCCG		59	NA	
Drosophila melanogaster	50	CG34411	FBgn0085440	FBtr0112679	1	1	1	80	X	13060223	13061220	CAGCAATCTACAAGGATTACAC		59	13060164	13060182	AGGTTCTTCAAACAAGCGA		59	NA	
Drosophila melanogaster	50	Tis11	FBgn0011837	FBtr0073683	2	1	2	93	X	12554818	12554837	TGTCTGCTGATATTCTGCAG		59	12554893	12571780	TGATCGTTCATCGTTACGT		59	NA	
Drosophila melanogaster	50	CG11697	FBgn0030313	FBtr0073511	3	1	1	60	X	11466929	11466947	GTAGCGTCAATGATCTTCG		58	11466971	11466989	GCCACATAAACTCCATAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PGRP-SA	FBgn0030310	FBtr0073509	2	1	1	113	X	11456392	11456410	GTATCGTATACGAAGGCAC		57	11456487	11456566	CCGATGGAAGTTTATCCAC		57	NA	
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489	3	8	12	101	X	11291934	11292010	GGATATAACCAGAGAACCGC		59	11292074	11292092	GACACATAGATACCCTGGC		59	NA	
Drosophila melanogaster	50	CG11750	FBgn0030294	FBtr0073456	1	1	1	60	X	11253424	11253442	GCTAGAGGGCTACTATCTG		57	11253466	11253484	AAATTGCCATTGCAGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpt3	FBgn0028686	FBtr0073436	3	1	1	118	X	11019356	11019374	ACATGGACGTACTGATACC		58	11019530	11019606	TTGCAGTTTCTTGTAACGC		59	NA	
Drosophila melanogaster	50	C901	FBgn0021742	FBtr0073400	3	1	1	214	X	10860494	10860512	CCTATAGACGCAACTTCGA		58	10860172	10860251	CTGGCAATAACCATTCATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34408	FBgn0085437	FBtr0114584	1	1	4	80	X	10120618	10120636	GGATCTGAATGTTTCGCTG		58	10120680	10121391	ACTAAGGTGTCTGTTTCCC		58	NA	
Drosophila melanogaster	50	CG34339	FBgn0085368	FBtr0112541,FBtr0112542	3	2	2	132	X	9319487	9366041	GGATCACCAGGTAAATACAC		57	9319374	9319392	TCCCTACATTCCCTTACTC		57	NA	InUTR
Drosophila melanogaster	50	CG12111	FBgn0030050	FBtr0071232	1	1	1	60	X	8464754	8464772	CCATCGGAGATTGATACCA		58	8464712	8464733	GCTCGATGTAGTAATAGTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11265	FBgn0030049	FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964	3	4	4	142	X	8459066	8459084	ATGATATCGGTCGAAGCAG		59	8459189	8459420	AATGATTCGACCCAGTATCG		59	NA	
Drosophila melanogaster	50	PIP82	FBgn0024943	FBtr0071235	2	1	1	111	X	8419964	8419983	ATCCCAATCAGAATCCATCG		59	8419797	8419890	TAGCTATTCTCTTCGTCGC		58	NA	
Drosophila melanogaster	50	otu	FBgn0003023	FBtr0071238,FBtr0071237	3	2	3	144	X	8381409	8381623	ACTATAACTTTAAGGTGGGCG		59	8381022	8381303	GGGACCACTATCTCTTTGC		59	NA	
Drosophila melanogaster	50	otu	FBgn0003023	FBtr0071236	1	1	3	141	X	8381020	8381624	GACTATAACTTTAAGGTCCCGT		59	8380900	8380918	AAGACTTGTTGGCCTTACC		59	NA	
Drosophila melanogaster	50	CG18262	FBgn0030012	FBtr0071158	3	1	1	88	X	8048110	8048128	TTCATGACCTCAATGTCCA		58	8048180	8048198	CTTCTTCCGTTGAAACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2120	FBgn0030005	FBtr0071154	1	1	1	153	X	8030081	8030099	ATTGGAACTTGTGAATGGG		57	8030284	8030302	TTCCGAGAATCTTCTGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CHES-1-like	FBgn0029504	FBtr0071079,FBtr0112946	3	2	2	87	X	7580675	7580693	TCAGAATAACCAGGGAGGA		59	7580530	7580625	GATGTTGTGATTCTCCTCAC		58	NA	
Drosophila melanogaster	50	CG9650	FBgn0029939	FBtr0112959,FBtr0112957	3	2	6	123	X	7126488	7126507	TAAGTTCATCCAGCACAAGG		59	7126591	7126956	TATTGTCGTTCTAAGGCTGAG		59	NA	
Drosophila melanogaster	50	CG4607	FBgn0029932	FBtr0071014,FBtr0071013	3	2	2	61	X	6964929	6964949	GAAATCCCTCAGATACTTCCG		59	6965440	6965458	CGAATTCCGGTACGTAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32736	FBgn0052736	FBtr0071008	2	1	2	97	X	6905778	6905857	AGACCAATTTCTACCGCAC		59	6905918	6905936	TTAGTTGGTGTTATTCGCG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG3842	FBgn0029866	FBtr0070903,FBtr0070904	2	2	2	60	X	6236588	6236606	GTGAGAAATTTCGTGGAGC		59	6236627	6236648	TATTGATCAGTATATCCAGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5937	FBgn0029834	FBtr0112952,FBtr0070868	2	2	2	107	X	5938567	5938585	CGAACACTTAGGGTGAAGG		59	5938726	5938744	ATTCAAACTGTTGCTGAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4096	FBgn0029791	FBtr0070805	2	1	1	197	X	5598567	5598650	CAACAACTGCATGACTCTC		58	5600595	5600613	GTCATGATGTGCACAATGG		59	NA	
Drosophila melanogaster	50	snf	FBgn0003449	FBtr0070748	1	1	1	94	X	5203548	5203566	GATCTTCAAGGAGATCGGC		59	5203624	5203642	ATTTGGAGTAGGCGATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Xpac	FBgn0004832	FBtr0070670	3	1	1	65	X	3997307	3997325	ATCTACACCAAGAAGACGC		59	3997260	3997278	CTCTTCATCGTAGGTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15239	FBgn0029681	FBtr0070612	2	1	1	169	X	3783554	3783573	GATGACCTCTTTGGATTTGC		59	3783853	3783871	CTAAAGCCACCGTAATCAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Parg	FBgn0023216	FBtr0070585	2	1	1	60	X	3564068	3564088	CAGTCACATCATCAATATCGC		59	3564028	3564046	CAATGTACGCCTTGTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13021	FBgn0029669	FBtr0070570,FBtr0070571,FBtr0070572	1	3	3	60	X	3409536	3409555	AATGTACGAATCGGTAATCC		57	3409578	3409596	ATCCTTCGTCCTTATCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14421	FBgn0029644	FBtr0070554	3	1	1	82	X	2835652	2835670	GAACTTCCAGATCTTCGGT		58	2835716	2835734	TTAACAGATCGGTCAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syx4	FBgn0024980	FBtr0070494	2	1	1	128	X	2636017	2636604	TACTCAATCCGTACACGGA		59	2635841	2635859	TGTGAAGCTCATCCATCTC		59	NA	
Drosophila melanogaster	50	moody	FBgn0025631	FBtr0070341	3	1	1	108	X	1941164	1941183	TTCTCATAATGATCGTGGGC		59	1941008	1941096	ATACAGAGGCTGATGATAAAGG		59	NA	
Drosophila melanogaster	50	Gr2a	FBgn0027796	FBtr0114515	2	1	1	97	X	1347845	1347917	CAATGCTCTGATAACCCAG		57	1347978	1347996	TATAGAGAAGGGTGCAGTC		57	NA	
Drosophila melanogaster	50	SNF1A	FBgn0023169	FBtr0070216,FBtr0070218	1	2	3	80	X	1270211	1270737	GTTGTACCAGGTCATATCG		57	1270781	1270799	ATATAGTCGAACAGCTCCC		58	NA	
Drosophila melanogaster	50	CG3655	FBgn0040397	FBtr0070181,FBtr0113327	2	2	2	132	X	970325	970475	CAATCTTCAGGTCCATCCC		59	970211	970229	AGTTAGGTAAAGGTGCTGG		58	NA	
Drosophila melanogaster	50	CG18166	FBgn0029526	FBtr0070096	3	1	2	244	X	374490	374958	CCTCACAAGTGGACTATCG		59	374264	374282	CAATGGCGTTTCCTTAACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG41526	FBgn0085669	FBtr0114116	1	1	1	94	U	3173717	3173735	AAACATTCACCACTCTCCT		58	3173792	3173811	CATGTATGTGGACTACTGAG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41500	FBgn0085660	FBtr0114105	3	1	1	141	U	1956963	1958156	GACTCATTAAGCATCTATACCG		58	1958257	1958276	AGTCCTTTCACAATCAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17471	FBgn0039924	FBtr0100543,FBtr0100544	1	2	2	80	4	1216413	1216482	AAGCAATACCATCCGTACG		59	1216351	1216372	TACAGTGATACGATACATTCCC		59	NA	
Drosophila melanogaster	50	pho	FBgn0002521	FBtr0089204,FBtr0089205	1	2	2	99	4	1194714	1194793	ACAATACAGACTCGACTGG		58	1194633	1194651	TTACAACCCTTATGTGGGC		59	NA	
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0100344,FBtr0100342,FBtr0100343,FBtr0089327,FBtr0100345	2	5	7	90	4	1128889	1128908	ACGTCTATGCTTTACGACAG		59	1128961	1129108	AACCTGTTCCAATGGAAGG		59	NA	
Drosophila melanogaster	50	mGluRA	FBgn0019985	FBtr0089184	2	1	1	80	4	964872	964942	TCTGATCGCAATACAGGTG		59	964985	965004	CGGTCTGGGTAATAGAATCG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-3305c	FBgn0082974	FBtr0113593	1	1	1	60	3R	24429115	24429133	TGTTAGAGCGTCGATAGAG		58	24429157	24429175	TCGTCAGTTGATCTCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or98P	FBgn0067407	FBtr0085225	3	1	1	60	3R	23670834	23670852	ACCTATTGCTCAGGATCTC		58	23670875	23670894	CATGCCATACTCAAAGTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycG	FBgn0039858	FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799	3	5	5	97	3R	27426466	27426484	ACTTCCACATCAAGGAGTC		58	27426317	27426407	ATCAGGAATCCTCATGTACTG		58	NA	
Drosophila melanogaster	50	CG11334	FBgn0039849	FBtr0085808,FBtr0085809	3	2	2	272	3R	27286574	27286650	AAGCATAGATTTCTGGACG		57	27286254	27286272	GTAAGGACGAGTCTCTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	zfh1	FBgn0004606	FBtr0100269,FBtr0085701,FBtr0085702	3	3	3	284	3R	26611407	26611426	TATTAAGCTGCCCGATTACC		59	26611741	26611759	CACTCTATGCACTGGTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11313	FBgn0039798	FBtr0085724	1	1	1	91	3R	26556351	26556371	GGGATCACTGATCAATAATCG		58	26556227	26556299	CTCTGAAAGAGACATCTCCT		58	NA	
Drosophila melanogaster	50	Ptp99A	FBgn0004369	FBtr0100523,FBtr0085423,FBtr0085422,FBtr0110981	2	4	5	107	3R	25297479	25297497	TGTGTTCCACATACACGAC		59	25297567	25298891	GTGTAGGGTCGTAAGTTCTG		59	NA	
Drosophila melanogaster	50	CG14509	FBgn0039647	FBtr0113303,FBtr0113304	3	2	2	148	3R	25004532	25006889	CAGAGTTCGATTATGCCAG		57	25004402	25004420	GTCATAGTGATTGGTGACG		57	NA	
Drosophila melanogaster	50	CG14516	FBgn0039640	FBtr0085382,FBtr0085383	3	2	2	95	3R	24969481	24969502	CAAGGGTTCAACTATTATTCGC		59	24969558	24969639	TTGTAAGCCATTTCCTGCA		59	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	1	8	8	120	3R	24962131	24962214	CCAATGATAAGCCCTACTCC		59	24962294	24962315	CCCATGAACATATAGGTTTCAC		58	NA	
Drosophila melanogaster	50	CG6599	FBgn0039513	FBtr0085166	2	1	1	80	3R	23187088	23187169	GAGTCTTCAGATAAAGATGGC		58	23187211	23187229	TATCAAGGTGTCAATGCAC		57	NA	
Drosophila melanogaster	50	CG5484	FBgn0039450	FBtr0085037,FBtr0085039,FBtr0085038	2	3	3	106	3R	22544580	22544653	ATGCATAAGGATTGGTCCC		59	22544723	22544741	TATGTGATGTAGCCCATGG		58	NA	
Drosophila melanogaster	50	CG6452	FBgn0039438	FBtr0085054	3	1	1	77	3R	22451953	22451971	ACTTCGTCAAGTACAGGAC		58	22451894	22451912	CTCCCAGGTTATCGTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ald	FBgn0000064	FBtr0114544,FBtr0085000	1	2	6	91	3R	22082687	22082705	AAGAAGGAGAACATTGCTG		57	22082305	22082325	GATCCAGCTGTATAGTTACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6142	FBgn0039415	FBtr0084987	2	1	1	87	3R	21962197	21962215	GGAACCCAATTTCATGCAG		59	21962320	21962338	AGGCTTCGATCTAGAAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14546	FBgn0039395	FBtr0084984	2	1	1	60	3R	21747123	21747142	ATCCTACGCGGTTTAATCAG		59	21747082	21747102	CTAGATGAGCTGCTTCTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0113385,FBtr0084927	2	7	7	110	3R	21527327	21527345	AACCAGGTCCACAAATCTG		59	21527166	21527253	GACATAGATGACGCTTGCT		59	NA	
Drosophila melanogaster	50	CG13656	FBgn0039307	FBtr0084817	2	1	1	89	3R	21094998	21095018	ACCTACTACAGGCTCTATCTC		59	21095069	21095171	CATTTGTTGTTAGCCGGTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG13654	FBgn0039290	FBtr0084805	2	1	1	80	3R	21038189	21038264	GAGTGGTCGATGGTATGTG		59	21038308	21038326	TTAACGCTCTCCATGATGG		59	NA	
Drosophila melanogaster	50	CG13652	FBgn0039284	FBtr0084781	1	1	1	94	3R	20986659	20986677	GTCATCTCCTAGTCGTTGG		59	20986735	20986753	ACTGGACATTAGAGAACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34027	FBgn0054027	FBtr0100082	1	1	1	80	3R	20929919	20929991	CTGACCAAGATGATGAGTC		57	20929857	20929876	CATATCATCGACACTTGGAC		58	NA	
Drosophila melanogaster	50	CG33095	FBgn0053095	FBtr0100204	2	1	2	232	3R	20925151	20925169	GGACACAAATGTCAAACGG		59	20925846	20925864	CGTTCGACTTCATATCGGT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG11791	FBgn0039266	FBtr0113283,FBtr0084762	2	2	3	142	3R	20877259	20877277	TCTACAATTGCCTGAGTCC		58	20878307	20878327	CTTCAATTCTGGAGGTATCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hr96	FBgn0015240	FBtr0084756	2	1	1	87	3R	20851913	20851932	GCATTTGATCGACTATCCAG		58	20852050	20852133	TTTGGTGAATACTGTCAGC		57	NA	
Drosophila melanogaster	50	CG13646	FBgn0039255	FBtr0084751	2	1	1	160	3R	20774500	20774518	TAGCTGATAACTTGCTGCA		58	20774642	20774796	TTTGAAGGAGAGGGATTCC		58	NA	
Drosophila melanogaster	50	CG11069	FBgn0039244	FBtr0084712	2	1	1	80	3R	20721540	20721613	GTCAGAGATCCTGTCATGC		59	20721655	20721675	AATGGATATCAGCAGATAGGC		59	NA	
Drosophila melanogaster	50	CG6995	FBgn0039229	FBtr0084699,FBtr0084700	3	2	3	95	3R	20646481	20646830	ACAGATGAAGATCATGGAGTC		59	20646887	20646905	CGCTTACGATCAGTAACGT		59	NA	
Drosophila melanogaster	50	CG5463	FBgn0039153	FBtr0084584	2	1	1	81	3R	19954274	19954292	CTGATAAATCTCCAGGCAG		57	19954152	19954229	GTTCGATTAGCTCACTGAC		57	NA	
Drosophila melanogaster	50	CG13604	FBgn0039137	FBtr0113277	3	1	4	144	3R	19816969	19817778	TCCAACTCAACCATCTCAC		59	19816843	19816861	GACGAAGTTCCCAATTGGA		59	NA	
Drosophila melanogaster	50	Gdh	FBgn0001098	FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498	1	4	4	96	3R	19763339	19763461	AAGCTAAGATCATTGCCGA		59	19763261	19763279	TACAGATCGGGAATGACCA		59	NA	
Drosophila melanogaster	50	CG10184	FBgn0039094	FBtr0084481	3	1	1	170	3R	19429481	19429564	TTCTGTACGAACAAGGTGG		59	19429329	19429347	AGATATTGTGGGTCTGCTC		58	NA	
Drosophila melanogaster	50	Irk2	FBgn0039081	FBtr0084425	2	1	2	114	3R	19344262	19344281	CAATCCTCAATCCTATCCCA		58	19341197	19344185	GAAATTGCGAGATCTGCAG		59	NA	
Drosophila melanogaster	50	orb	FBgn0004882	FBtr0084385,FBtr0084384,FBtr0100227	3	3	5	167	3R	19094013	19094120	TTCACCTTTAGTCAGCGAC		59	19093864	19093882	TTTGCCAAACTAAGTCCCA		59	NA	
Drosophila melanogaster	50	CG31365	FBgn0051365	FBtr0084406	2	1	1	105	3R	18950843	18950861	GTGGTCGTGTTTAATCTGG		58	18950696	18950714	GCTCATCTCTATCGTTCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31158	FBgn0051158	FBtr0113395,FBtr0113396	2	2	2	80	3R	18430801	18430882	CAAGCTGATGCTGAAAGAG		58	18430926	18430944	TTCTTGTGCTCGTTAAGCT		59	NA	
Drosophila melanogaster	50	CG7084	FBgn0038938	FBtr0084202,FBtr0084201	1	2	2	87	3R	18128384	18128492	CTATATGGGCGATACGTACG		59	18128542	18128560	ATACACAATGATGGGCAGG		59	NA	
Drosophila melanogaster	50	r-l	FBgn0003257	FBtr0084038	2	1	1	176	3R	16898333	16898351	TCTCCTTTCTGCTGAACAC		59	16897511	16897530	TCTCGTAGGTCAGTTTAGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12278	FBgn0038847	FBtr0084003	1	1	1	60	3R	16869959	16869977	TCCCAAGAAATCAGCACTC		59	16869998	16870019	ACTGTAGTACGTAGTACAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15690	FBgn0038825	FBtr0083957	2	1	1	60	3R	16581099	16581117	TTCTCCTACTTCGGAAACG		59	16581141	16581159	TAAAGAACGAAGTCTCCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11407	FBgn0038733	FBtr0083790	2	1	1	82	3R	15607737	15607807	TCCAGTCATTCCTTAACCA		57	15607853	15607871	GTTACAGTGGTAAGCAGAC		57	NA	
Drosophila melanogaster	50	CG6184	FBgn0038725	FBtr0083802,FBtr0083800,FBtr0083801	2	3	3	87	3R	15479275	15479357	CCAAGGAATTTAAGGACTACGA		59	15479209	15479227	TACACCAGTTCGTACTCCT		59	NA	
Drosophila melanogaster	50	Dys	FBgn0024242	FBtr0083765	3	1	8	158	3R	15308359	15310765	ATTGCAATTGTCGTGAGTC		58	15310887	15310905	ACGATCATCCAGATTCTGG		58	NA	
Drosophila melanogaster	50	CG34284	FBgn0085313	FBtr0112480	2	1	1	61	3R	14728338	14728357	AATTGGCTTTATCCCATTGC		59	14728296	14728314	CTTGTGAAGATCGACACCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7720	FBgn0038652	FBtr0083678,FBtr0083679	2	2	2	111	3R	14594466	14594484	TCATCTACGGCATGATGAG		58	14587720	14594391	CTCTTGAACCTGAGATCGA		58	NA	
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083641,FBtr0083643,FBtr0083645	1	3	13	90	3R	14340833	14340851	GAACATCGAAACGGATGTG		59	14261500	14340779	GTCAGTGTTGTACCTAGGG		58	NA	
Drosophila melanogaster	50	CG7669	FBgn0038607	FBtr0083576	1	1	1	115	3R	14188639	14188658	TGCCAGTGATAACAGTAGTG		59	14188736	14188809	TAGCAGTAAGTGGTTGCTG		59	NA	
Drosophila melanogaster	50	14-3-3epsilon	FBgn0020238	FBtr0083567,FBtr0083565,FBtr0083566,FBtr0083568	1	4	4	80	3R	14073561	14073579	TATTGCCATGAACGATCTG		57	14073622	14073709	ATCTCATAGTAGAACACCGA		57	NA	
Drosophila melanogaster	50	CG14313	FBgn0038579	FBtr0083615	2	1	1	83	3R	14017127	14017145	CACCTTTAGCATCATGCAG		58	14017062	14017080	TAGCTGACGTTGTTCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12321	FBgn0038577	FBtr0083616	1	1	1	60	3R	14014304	14014322	GTTTCTAAAGGACAAGCGT		57	14014262	14014280	GCTCGGTATGATTACTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7713	FBgn0038545	FBtr0083513	2	1	1	80	3R	13621623	13621725	GGTAGCCTACAATATCTATTGC		58	13621766	13621784	TCAATGTTCGGATTCTGGA		58	NA	
Drosophila melanogaster	50	Keap1	FBgn0038475	FBtr0083423,FBtr0083424,FBtr0083422	2	3	3	83	3R	12901902	12901979	AAATTTCACTCAGGTGTGC		58	12901837	12901856	AGTTCATCCCTTCGTATCAG		58	NA	
Drosophila melanogaster	50	CG10405	FBgn0038431	FBtr0110773	2	1	1	159	3R	12280831	12280849	CACTACGGTACTGACAGTC		59	12281349	12281367	GATTCCGATAAGGGTTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5903	FBgn0038400	FBtr0083281	1	1	1	80	3R	11971672	11971690	TACAACTTCATCAAGGGCG		59	11971610	11971628	GTACTTAAGGTCCTCCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5404	FBgn0038354	FBtr0083165	3	1	1	81	3R	11531789	11531809	GCATTGAAGAGTCGAATATGG		59	11531848	11531924	CGGTCCAATAACTCTAGTAAGAG		59	NA	
Drosophila melanogaster	50	CG6125	FBgn0038337	FBtr0083105,FBtr0083106	1	2	2	86	3R	11229093	11229169	CTTAAACAGCATGAATCCACG		59	11229027	11229045	CTCAGATCGTAGTGCATCG		59	NA	
Drosophila melanogaster	50	CG5044	FBgn0038326	FBtr0083090,FBtr0083091	1	2	2	94	3R	11183940	11183959	GGGATTCTAGAGAATCTGCA		58	11184280	11184298	GTAACCTTCATCGAGGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089959	1	1	12	99	3R	11126777	11126795	CAACACCCGTCTAAAGGAG		59	11128937	11130910	GATCATCTCGTCTTCGAGC		59	NA	
Drosophila melanogaster	50	CG3610	FBgn0038266	FBtr0082994	3	1	1	60	3R	10671505	10671523	CGTAGAGATCTAATGGCCC		59	10671546	10671565	TTCGATGATCTTGTATCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)L1231	FBgn0086686	FBtr0082975	1	1	1	103	3R	10471316	10471334	GTATTTGCGAGAACAGCTC		58	10471109	10471250	TGCTATATCATCAGCATCGT		58	NA	Nonspecific
Drosophila melanogaster	50	primo-2	FBgn0040076	FBtr0091746,FBtr0091745	3	2	2	150	3R	9537064	9537082	ATTCGACTACATCTTCGCC		59	9536741	9536953	ACCAATGTCATAATAGGGATCC		59	NA	Nonspecific
Drosophila melanogaster	50	flfl	FBgn0024555	FBtr0114604,FBtr0082817	2	2	2	161	3R	9513944	9514076	AAGATATGTCAGGTGCAAGG		59	9514200	9514218	TATCGTTTCCGAGATGTCC		58	NA	
Drosophila melanogaster	50	flfl	FBgn0024555	FBtr0114604,FBtr0082817	2	2	2	161	3R	9513944	9514076	AAGATATGTCAGGTGCAAGG		59	9514200	9514218	TATCGTTTCCGAGATGTCC		58	NA	
Drosophila melanogaster	50	CG14377	FBgn0038148	FBtr0082756	2	1	1	148	3R	9223599	9223617	TCATCTGTTTGACCCTGTG		59	9223729	9223747	GTAGGTGGAGTATGATGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GstD3	FBgn0010039	FBtr0082570	2	1	1	61	3R	8199308	8199326	GTGGGATTCGACATTAGCA		59	8199351	8199369	ATCTTCTTGACATGGTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	3	15	15	123	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811939	7812029	GGTTCTTCAGGATGTTGGA		59	NA	
Drosophila melanogaster	50	CG6923	FBgn0037944	FBtr0082432,FBtr0082433	3	2	2	109	3R	7571158	7571176	CTACTCACCACTGCATCTG		59	7571003	7571088	GCTCAATAGTTTCCAAAGTAGC		59	NA	
Drosophila melanogaster	50	Csk	FBgn0086903	FBtr0082447,FBtr0082446,FBtr0082444,FBtr0082448,FBtr0082445	3	5	5	85	3R	7460836	7460854	AAATCAGACATGTGGAGCT		58	7460708	7460787	TCGGCTAATGGAATTCTGG		59	NA	
Drosophila melanogaster	50	dpr5	FBgn0037908	FBtr0082395,FBtr0082394	1	2	2	222	3R	7330267	7331006	CAACTCGAATTCTGACAGC		58	7331192	7331210	CATCGAACATAAGTTGCCG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG17734	FBgn0037890	FBtr0082360	1	1	2	108	3R	7068559	7068577	GAGTACCTGTTCGACAAGG		59	7068209	7068227	TAGCCGATGTCATCTTGTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG6666	FBgn0037873	FBtr0082372	2	1	1	60	3R	7035051	7035071	AATGGTATTAGGCATCTCCTC		59	7035011	7035032	AGTAAACCTCCTTGATCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9458	FBgn0037765	FBtr0082152	1	1	1	60	3R	5644911	5644931	TACATCACTATCGTTCAGCTC		59	5644871	5644889	GGGTGTAGATACTATGCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SpdS	FBgn0037723	FBtr0082079	3	1	2	83	3R	5457948	5457966	CAGCCTTATCGATGGAGTC		59	5458013	5458107	TAGGTTTCGCTGAAAGACG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	SpdS	FBgn0037723	FBtr0082079	1	1	2	80	3R	5457953	5457973	TTATCGATGGAGTCATCTAGG		58	5458014	5458109	CATAGGTTTCGCTGAAAGAC		58	NA	InUTR
Drosophila melanogaster	50	DppIII	FBgn0037580	FBtr0081841	2	1	2	160	3R	4170700	4170718	CAATCTCCAGAAGTTTGGG		58	4170911	4170929	GAGATTCTCGAAGGCACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10903	FBgn0037543	FBtr0081787	2	1	1	145	3R	3856791	3856873	GAAATATTCCACAAACACCCG		59	3856980	3856998	CAAGAACGCTACCTGAGAG		59	NA	
Drosophila melanogaster	50	Prat	FBgn0004901	FBtr0081764	3	1	1	60	3R	3736863	3736882	GGTACATACGACACATGGAG		59	3736822	3736841	TTCGTTGTTAACAAGCTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199	3	14	15	133	3R	1100031	1100465	GAGCACAACGTATTTGGTG		59	1099916	1099934	TACATATTCTCGCCAGTCC		58	NA	
Drosophila melanogaster	50	uta	FBgn0037302	FBtr0078826	3	1	2	155	3R	1062632	1062650	TTCCAGGAGGGTCTTAGTC		59	1062495	1062514	TAGCATTTCCTCTTACTCCC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897	1	5	15	192	3R	110112	120843	ATTAAGTGCCGTTAAAGGC		58	120999	121298	GATGTTGTACTTATCGCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	Gel	FBgn0010225	FBtr0078971,FBtr0078968,FBtr0078973,FBtr0078972,FBtr0078969	1	5	5	135	3R	66120	66138	TCAATACGAGCAAGAGGAC		59	66237	66319	AAAGTAAAGCTTTGCCGTG		59	NA	
Drosophila melanogaster	50	CG14448	FBgn0037191	FBtr0078534	1	1	1	60	3L	22782076	22782094	ACACAATTACCTCTTTCGG		57	22782118	22782136	CTGCATGTTACTGATCTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12546	FBgn0037178	FBtr0078541	1	1	1	60	3L	22686851	22686869	TGTTCTTTCCGTCCTAGGA		59	22686809	22686827	TGTAGATGTGCTGCTACTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14457	FBgn0037174	FBtr0100669	1	1	2	91	3L	22671741	22671759	TTTGGAACTGATTGTGCTG		58	22671814	22672166	CTTTGATGTAATCTGGCGG		58	NA	
Drosophila melanogaster	50	CG33772	FBgn0053772	FBtr0091773	2	1	1	89	3L	22645004	22645022	ATGTTAGGGACTGGAACAG		58	22644900	22644918	ATGTGGCCACTTGATATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpLP0	FBgn0000100	FBtr0078481	1	1	1	66	3L	22069391	22069409	GTTAGGGAGAACAAGGCAG		59	22069439	22069531	ACTCATCGAACAGTTCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	sa	FBgn0002842	FBtr0078401	2	1	1	88	3L	21399044	21399062	CATCGAGGTGATAACCCAC		59	21398679	21398697	CGAAATTTCCTGAGGATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10585	FBgn0037044	FBtr0078287	2	1	1	158	3L	21021858	21021876	ATTGATAGTGCTCCTGGTG		59	21021998	21022195	TTAACCACGCTATTGTGCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	schuy	FBgn0036925	FBtr0074899	1	1	1	60	3L	19981045	19981063	AATCAGTCGCTACACTTCC		59	19981086	19981105	TTGTAGTTTAGGCTTCACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Paps	FBgn0020389	FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885	2	6	6	94	3L	19853427	19853509	TAGACAGCATGGAGATCCT		59	19853566	19853585	AAACTCATCCTTCCTCTTGG		59	NA	
Drosophila melanogaster	50	HLH106	FBgn0015234	FBtr0074873,FBtr0074875,FBtr0074874	1	3	3	102	3L	19790266	19790285	GTCTTCACGTACGATCTGAG		59	19790347	19790437	CTCGATATTGCTTAATGACGTG		59	NA	
Drosophila melanogaster	50	CG8786	FBgn0036897	FBtr0074962	1	1	1	88	3L	19635049	19635067	CCATCTGTTTGCAAACCTG		59	19634304	19634999	CTTATAAGCAACACCCTTCAC		58	NA	
Drosophila melanogaster	50	CG14087	FBgn0036868	FBtr0074996	2	1	1	60	3L	19382794	19382813	TCTATTGCTTAGGATTGCTG		57	19382836	19382854	TAGAAGCTTGTTTGAGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rept	FBgn0040075	FBtr0074988	3	1	1	60	3L	19249656	19249675	GATCGCATGATCATCATACG		58	19249697	19249716	TTAGGATCTCCTTAACCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Indy	FBgn0036816	FBtr0075083,FBtr0075082,FBtr0075081	1	3	3	86	3L	18824243	18824263	GTGGAGTACTGTAATCTACAC		57	18824113	18824195	GAGGCCAAAGTGTAATCTG		58	NA	
Drosophila melanogaster	50	Cyp12c1	FBgn0036806	FBtr0075091	2	1	1	60	3L	18678557	18678575	CAGGGAATTGGGACTACTC		59	18678515	18678535	CTTGAACAGTTTACTAGCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6322	FBgn0036733	FBtr0075209	3	1	1	60	3L	17506562	17506583	ACTACTTCGATCTAGAGATGGA		59	17506523	17506541	TCAAATTCCTCAAGGAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32185	FBgn0052185	FBtr0075174	2	1	1	60	3L	17488009	17488027	AATACTGATCCTCGTGTCC		58	17488050	17488069	ATATGGTTGACGATAGGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scaf6	FBgn0053522	FBtr0100596,FBtr0091474	3	2	2	172	3L	17035131	17035211	AACAAGCTCTGCTAAAGCA		59	17034977	17034995	TTGCATATTGTCTTGTGCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12436	FBgn0036637	FBtr0075401	2	1	1	116	3L	16522762	16522780	TTCAATACGAGTGCCAAGG		59	16522613	16522631	ATTTAAGTCCCACAACGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13071	FBgn0036585	FBtr0075461	1	1	1	204	3L	16255941	16256033	TCAAGCTGTTCGTATTCCT		58	16256201	16256219	TAGATCCAGCCATATCCAC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	GXIVsPLA2	FBgn0036545	FBtr0075509,FBtr0075508	3	2	2	172	3L	15948605	15948623	AACTGCATATACCAGTGCC		59	15948822	15948840	CAGATATCGTGGTCATTGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG6878	FBgn0036488	FBtr0075643	2	1	1	100	3L	15155061	15155079	CATATAGAGCCGGTGAACC		59	15155142	15155161	TTCATCTTATCGAAGCACGT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7003	FBgn0036486	FBtr0075646	1	1	1	80	3L	15148021	15148039	AATCGTATGGCTTTAACGC		58	15147899	15147979	CTTTCTTGGAAAGCTCATAGG		58	NA	
Drosophila melanogaster	50	CG3020	FBgn0036464	FBtr0075670	1	1	1	80	3L	15009976	15009994	CAATCCCATTTGGAACGAG		58	15009707	15009932	ACCACATAGATCTCGATGG		58	NA	
Drosophila melanogaster	50	CG7768	FBgn0036415	FBtr0075736,FBtr0075737	1	2	2	60	3L	14211795	14211813	GCCAATACCAATGGATCTC		57	14211837	14211855	TATTATCCAGCCATGTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9028	FBgn0036389	FBtr0075759	1	1	1	181	3L	13961789	13961865	GGAATCTGGATTTCAGCCA		59	13962010	13962028	TTCAGTGTTCATGGAGGAG		58	NA	
Drosophila melanogaster	50	Atg1	FBgn0010715	FBtr0075945	1	1	1	80	3L	12781718	12790790	TCATGGAGTATTGCAATGG		57	12781656	12781674	AGAGTCTAACGGTATCCTC		57	NA	
Drosophila melanogaster	50	Atg1	FBgn0010715	FBtr0075945	2	1	1	80	3L	12781718	12790791	GTCATGGAGTATTGCAATGG		58	12781657	12781675	GAGTCTAACGGTATCCTCG		58	NA	
Drosophila melanogaster	50	CG10632	FBgn0036302	FBtr0114611	1	1	4	112	3L	12533237	12533498	ATGTCTACAAGGCCAATCG		59	12533143	12533161	CTTTGCATACTCACTGCTG		58	NA	
Drosophila melanogaster	50	Pi3K68D	FBgn0015278	FBtr0076088,FBtr0076087	1	2	3	80	3L	11769208	11769291	CGTACTTACTGTGATGATACAC		58	11769149	11769168	CACTTCACATATGTGTTGGG		58	NA	
Drosophila melanogaster	50	CG6024	FBgn0036202	FBtr0113164,FBtr0113165,FBtr0113166	3	3	3	91	3L	11752784	11752802	GCTAATCCTCATCGGACTC		59	11737115	11752729	GCGACTGCATGTAATAGTG		58	NA	
Drosophila melanogaster	50	CG11658	FBgn0036196	FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127	3	5	5	186	3L	11694739	11694757	TAATGGTCTCAGTGAGGCT		59	11694509	11694589	GCTGTCATTTACATGCGAG		59	NA	
Drosophila melanogaster	50	CG7368	FBgn0036179	FBtr0110884	2	1	1	182	3L	11596183	11596201	CAATATGCAACTGTTGCGT		59	11596347	11596449	ATTCTGGAGTACTTGCTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Mob1	FBgn0036172	FBtr0089331,FBtr0089330,FBtr0089333,FBtr0089332	1	4	4	158	3L	11520315	11520333	CTAGTGGATCTTCCAGCTG		59	11518604	11518688	TAAGTACGTTCTGTTGCCG		59	NA	
Drosophila melanogaster	50	scyl	FBgn0041094	FBtr0076169,FBtr0076168	3	2	2	60	3L	11247415	11247433	AGTTCATGAAGAGTTTGGC		57	11247455	11247475	TTCTTGGTGATCGTATACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14149	FBgn0036105	FBtr0076269	1	1	1	60	3L	10872477	10872495	GAATCCAATGGCATGATGG		58	10872519	10872537	CGAAACTGTCTGTGAAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32066	FBgn0052066	FBtr0076278,FBtr0076277	3	2	2	241	3L	10640104	10640122	CTACGAGCATTCCATGGAG		59	10634813	10634831	TATTCTCCGTGGAATCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32062	FBgn0052062	FBtr0113420	3	1	5	128	3L	10575214	10580742	CGGAGTGTATACTATGATCCC		58	10580986	10582464	AGCAGTGGCATTTAATATGG		58	NA	
Drosophila melanogaster	50	CG3529	FBgn0035995	FBtr0076461	1	1	1	106	3L	9442915	9443129	GGTAAGTAAATCGACGAAAGAG		58	9443359	9443377	ATTTGTCAAACTCCGAGCT		59	NA	
Drosophila melanogaster	50	CG4461	FBgn0035982	FBtr0076452	2	1	1	63	3L	9368679	9368697	GTATCTGTGGGACGATTCG		59	9368724	9368742	GAGTAGGTCACTTCTGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5021	FBgn0035944	FBtr0076514,FBtr0076513	2	2	2	142	3L	8960602	8960685	TTTGAGTCAAAGAACAGTCG		58	8960790	8960808	ATCATTACCAGCAGTAGCC		59	NA	
Drosophila melanogaster	50	CG6683	FBgn0035902	FBtr0076655	1	1	1	60	3L	8507618	8507637	CATTTGAAATTCCTGCAGCA		59	8507577	8507595	TCAGATCACCCGAATTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13671	FBgn0035867	FBtr0076706	1	1	1	60	3L	8295215	8295234	TCTGGGATATCTATGAACGG		58	8295256	8295275	TTGTTGAACTCCCTTAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13685	FBgn0035816	FBtr0076809	1	1	1	64	3L	7741167	7741185	AATCTCAAAGCTGACGAGG		59	7741213	7741231	AAATTATACATGCGCACCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	smid	FBgn0016983	FBtr0076851	2	1	2	99	3L	7375349	7375367	GAAACAGATGACCAGGGAG		59	7375429	7375500	AATGATCGAGAATGCTTGGT		59	NA	
Drosophila melanogaster	50	dikar	FBgn0052393	FBtr0076954,FBtr0076953	3	2	2	173	3L	6734106	6734124	CTCGATGACAACTTTCTGC		58	6733868	6733887	ATCCTGGTAGAGATTCTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32397	FBgn0052397	FBtr0076985	1	1	1	70	3L	6558069	6558504	ATTACGTCAGCAATGACGT		59	6558017	6558035	TCTTCCTCCGTAGTAGGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6600	FBgn0035672	FBtr0077046	1	1	1	60	3L	6063672	6063693	TACTGGATCTCTTTAAGTCACC		58	6063711	6063732	CAGATAACAATAAGCAGCAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pole2	FBgn0035644	FBtr0077081	3	1	1	60	3L	5889892	5889911	AAGAGGGCAAGTTCTATGTC		59	5889851	5889870	GCTCCAGTGAGATCTAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5568	FBgn0035641	FBtr0077025	3	1	1	60	3L	5865395	5865414	CACCATTAGCAATAGTCACC		58	5865487	5865506	AATAATCGAGCTATCCACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112712,FBtr0112708,FBtr0114646	2	3	8	117	3L	5661232	5661800	ATCTATTGAGTTCGTTCAGG		57	5661880	5661898	ATGCAGGTGATGTTAACAG		57	NA	
Drosophila melanogaster	50	CG11347	FBgn0035542	FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141	2	6	6	226	3L	4419447	4419465	TATTAGGTCCACCCAGGAG		59	4419654	4419749	TGTTCTTGCTCTTCTGACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Fit1	FBgn0035498	FBtr0073209,FBtr0073210	3	2	2	60	3L	4105483	4105501	ATTCCTCAAGCCTCAAAGG		59	4105524	4105543	CCTGTAGGTGAAGAAGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133	3	5	11	193	3L	3578466	3593333	ATTGCAGATATGGAGACTGG		59	3593487	3593507	CTGTTTGTTCAGAAAGACCTC		59	NA	
Drosophila melanogaster	50	CG11526	FBgn0035437	FBtr0073083,FBtr0073084	1	2	2	103	3L	3322982	3323000	TACTTCAAGGCCAATTACG		57	3322830	3322915	GATATTAGAGCAGCGATGG		57	NA	InUTR
Drosophila melanogaster	50	CG32281	FBgn0052281	FBtr0073034	1	1	1	60	3L	3169513	3169534	GTCCAGATTGAAGGATTTAACG		59	3169553	3169573	CATGTTTCGAAAGTAGTGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32306	FBgn0052306	FBtr0072894,FBtr0072892,FBtr0072893,FBtr0072895	2	4	4	83	3L	2464050	2464068	TGAAACTACCGCAGATCAC		59	2464115	2464133	AGTAGTGATCCATGGACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1275	FBgn0035321	FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906	1	4	4	62	3L	2253685	2253787	GTATGGCAACTCCATTCTG		58	2253641	2253659	AGCTTCAGAGTCTTCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15822	FBgn0035308	FBtr0072917	1	1	2	74	3L	2154776	2156645	AACAGGAAAGAGTGTCGTG		59	2154720	2154738	CTTCCACTGTCATGGAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Aprt	FBgn0000109	FBtr0089421,FBtr0089420	1	2	2	80	3L	1884237	1884331	TACGGTATTGACACCTTTGAG		59	1884177	1884195	GGCTAGTAGATCGTCAACG		59	NA	InUTR
Drosophila melanogaster	50	alphaCop	FBgn0025725	FBtr0072812,FBtr0072811	2	2	2	60	3L	1643933	1643954	TATGGTGGTCTTTAAACTGGAG		59	1643894	1643913	GAGAATATTCCCGTGGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12104	FBgn0035238	FBtr0072825	2	1	1	63	3L	1601689	1601708	CAAATGCAAGTGATAGTGCA		59	1601645	1601663	CATAGACGTTCTTCTGCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cct1	FBgn0041342	FBtr0072741,FBtr0072739,FBtr0072738,FBtr0072740	1	4	4	113	3L	1551789	1551870	CTATGTGGACGAGATCGTC		59	1551947	1551965	ATGCCATCGGTTACATACG		59	NA	
Drosophila melanogaster	50	CG9149	FBgn0035203	FBtr0072667	2	1	1	61	3L	1303940	1303958	TCGAGGGTATACAGAAGCT		59	1304043	1304061	ATTGCCAGCGGTTATAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13912	FBgn0035186	FBtr0072625	3	1	1	70	3L	1190005	1190023	ATCACAGGTACTTGACCTC		58	1190057	1190075	GGAATTCTGTCGAGAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13902	FBgn0035166	FBtr0072595	3	1	1	60	3L	840786	840804	TTAACCCGAGTAACCTCCA		59	840744	840762	ACTCTTCTAGACTGGGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	klar	FBgn0001316	FBtr0072565,FBtr0112808	2	2	4	183	3L	452993	453011	CATCACCACAATGACACCT		59	451762	452846	ATTTCAGTATGTCGCCTCC		59	NA	
Drosophila melanogaster	50	CG13884	FBgn0035138	FBtr0072568	1	1	1	91	3L	366256	366274	ACTACAATCATGGTGGCTC		59	366183	366202	ATAACTTCCAAATAGCGGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34454	FBgn0085483	FBtr0112760	2	1	1	60	3L	232210	232228	TTTCGAAACATCTCGTAGC		57	232168	232187	CGAAATTGGTATTGACGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gyk	FBgn0025592	FBtr0072530,FBtr0072529	3	2	2	156	3L	202532	202550	TTCAATCCGACCTAGTAGG		57	202335	202353	GATGGCTTTATGGCTTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CR30082	FBgn0050082	FBtr0087321	1	1	1	151	2R	11573147	11573167	CGATTGTACATCTGAGTTCTG		58	11572862	11573035	GTACTTGGCATTTGTAAACG		57	NA	
Drosophila melanogaster	50	CG30429	FBgn0050429	FBtr0072450	2	1	1	60	2R	21134353	21134371	ACGATGACATGAAATGTGG		58	21134395	21134413	CCAAAGTAGACACAACCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL39	FBgn0023170	FBtr0072185	2	1	1	106	2R	19949797	19949816	CAAGTCGTTCAGAATAAAGC		57	19949505	19949729	TAGCGTTGTAACGAATAGTG		57	NA	
Drosophila melanogaster	50	CG5602	FBgn0034922	FBtr0072132	3	1	1	96	2R	19778247	19778321	AGTTCCTAAGATTGATGCGA		58	19778380	19778398	CATAGGTTCTACCTTGGGC		59	NA	
Drosophila melanogaster	50	CG9850	FBgn0034903	FBtr0100329	2	1	2	123	2R	19647293	19648385	CCATAACCAAACTCGATATGTG		59	19646068	19646086	CTGTTCACCTTCTCCAGTC		59	NA	
Drosophila melanogaster	50	CG9876	FBgn0034821	FBtr0071979	1	1	1	254	2R	18981234	18981252	GAACTCAGTAGCAACTTCG		58	18978215	18978413	AAACCAGACCTGAACTCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	inaD	FBgn0001263	FBtr0071909	1	1	1	87	2R	18745183	18745201	CATAGTAACTACGCCGACG		59	18745060	18745133	CTCGATCGATCTCATAACCC		59	NA	
Drosophila melanogaster	50	CG30274	FBgn0050274	FBtr0071888	3	1	1	60	2R	18713363	18713381	GTTCCAAGAGTTCTTGGTG		58	18713405	18713423	ATCAGCATCGATACTCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30266	FBgn0050266	FBtr0071887	3	1	1	128	2R	18711273	18711291	TGCAAAGAACGACATATCG		58	18711436	18711456	CCGTCATTATCCGTAATTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30268	FBgn0050268	FBtr0071877	2	1	1	80	2R	18601080	18601152	CATAATTGCTGAGTTCGAGG		58	18601193	18601213	ATATCAAGGGACTGAGATAGC		58	NA	
Drosophila melanogaster	50	Obp59a	FBgn0034766	FBtr0071869	3	1	2	61	2R	18590571	18590591	AGGAGATGAATATGGTAGGTG		58	18590613	18590632	CTTCTCTGAAGGATTTCGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4554	FBgn0034734	FBtr0071833	1	1	1	80	2R	18378870	18378888	CTGATTCGCAATATACGCT		57	18378931	18379011	AAACATAGCCGTTCTTATGC		58	NA	
Drosophila melanogaster	50	CG10344	FBgn0034729	FBtr0071840	3	1	2	170	2R	18313878	18313896	ATACATGTGGGTCATCCAC		59	18313668	18313687	TTCTTTGCTCTCCTTAGTGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG10494	FBgn0034634	FBtr0071699,FBtr0071700	3	2	2	98	2R	17405516	17405534	TTCAATGACAGTGACGAGG		59	17405377	17405397	CCGAATGATGAGTAGAAACGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13423	FBgn0034513	FBtr0086217	3	1	1	60	2R	16424977	16424995	CCTGAATGATATGACAGCG		58	16425019	16425037	TAGATTCACCGTACAGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10822	FBgn0034478	FBtr0086339	1	1	1	60	2R	15839049	15839070	GTTACGTGGAAGAAGTATTTCG		59	15839091	15839109	ATCAATATGTCCTCCACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp56g	FBgn0034474	FBtr0086343,FBtr0086342	2	2	2	84	2R	15671154	15671174	CGAACTTTAAGGATGTCATCG		59	15671090	15671108	ATCTTGAAGGCAGTGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp56e	FBgn0034471	FBtr0086327	2	1	1	78	2R	15600067	15600085	TCAAACAGGAGGGAATCAC		59	15600126	15600145	TTTACCTTTGGATCGGAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Topors	FBgn0034410	FBtr0086570	3	1	1	173	2R	14861591	14861611	GAGCTGATGAATTACTACCAG		57	14861746	14861831	CTGAGCAGGATTGTTTCTG		58	NA	
Drosophila melanogaster	50	CG15096	FBgn0034394	FBtr0086633,FBtr0086632	2	2	2	112	2R	14697626	14697644	TATTCTTTGCCCTTACGGT		58	14697466	14697550	CGACCAATTATACTCGGGA		58	NA	
Drosophila melanogaster	50	CG33958	FBgn0053958	FBtr0114576,FBtr0099994	2	2	2	80	2R	14074503	14074521	TCCATTAATCGTGGATTGC		57	14074345	14074459	AACTAGGTATCGCCATACG		58	NA	
Drosophila melanogaster	50	CG17680	FBgn0062440	FBtr0086781	1	1	1	173	2R	14035292	14035310	TAACCTAAGGATCCTGCAG		58	14035137	14035155	TTCTCCTCCAGAAAGTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	stau	FBgn0003520	FBtr0086783,FBtr0086784	2	2	2	111	2R	14007613	14007631	AAACAACACGGAGAGTAGC		59	14007460	14007539	GAAGTTGACCTCAAAGTCCA		59	NA	
Drosophila melanogaster	50	CG30456	FBgn0050456	FBtr0086980	2	1	1	113	2R	12993700	12993782	TACTTTACTAGTATCCGCCTG		58	12993857	12993875	ATTAATGAACTGCGTGAGC		58	NA	
Drosophila melanogaster	50	CG30098	FBgn0050098	FBtr0087168	1	1	1	114	2R	12242539	12242557	ATAACAGATTCGCATGTGG		57	12242324	12242342	GACGAATCGTATTCACCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nox	FBgn0085428	FBtr0112650	2	1	1	80	2R	12199780	12199798	CTATGTGATCTGCGGTGAG		59	12199842	12199925	TTATCGAGGATCCCTCTGG		59	NA	
Drosophila melanogaster	50	CG7786	FBgn0034096	FBtr0087190	3	1	1	100	2R	12122337	12122355	GAACAATCCGTCCTACTCC		59	12122255	12122274	GTAGAGTTTCCGACGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mlf	FBgn0034051	FBtr0087292	1	1	4	94	2R	11826017	11826035	TGACTGTGTAATCCAGGAG		58	11824075	11825959	GTGGATGTATGCTGTTCTG		58	NA	
Drosophila melanogaster	50	Ranbp11	FBgn0053139	FBtr0087278	3	1	1	60	2R	11574675	11574694	CGATATGAGCAGGTAATGTG		58	11574715	11574735	TGTACATGGTAATCCTTTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30471	FBgn0050471	FBtr0087333	3	1	1	137	2R	11423920	11424004	TTCTTTACCATCAGTGGCT		58	11424105	11424123	CAATCTCAGGTAGCGATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8090	FBgn0033995	FBtr0087404	2	1	1	83	2R	11087678	11087696	CTGAATCCTTCCAAACCCA		59	11087554	11087631	TTGATTGATGTCTTCGCCA		59	NA	
Drosophila melanogaster	50	CG33506	FBgn0053506	FBtr0091446	2	1	1	94	2R	10745457	10745476	TATGGTTTACACCATGGGTC		59	10745320	10745338	GACCCAGAATGCTGTAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34442	FBgn0085471	FBtr0112746	3	1	1	106	2R	10255105	10255189	ACATTATATTCAGTCCCAGCAG		59	10255256	10255274	TTTGGTATACGTGGAGCAC		59	NA	
Drosophila melanogaster	50	CG13018	FBgn0040751	FBtr0087581	3	1	1	119	2R	10044828	10044846	GATCTCAAGATGTGCCTCC		59	10044727	10044745	CTCGTAGAAGGTATTGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6329	FBgn0033872	FBtr0087634,FBtr0087633,FBtr0087635,FBtr0087636	1	4	4	140	2R	9717361	9718064	TGCATACAAGTGACCACTG		59	9718168	9718186	TTTGTCCTTCAGATGCTCC		59	NA	
Drosophila melanogaster	50	Mp20	FBgn0002789	FBtr0005009,FBtr0087745	1	2	2	81	2R	9134626	9134644	ATCAACAACTTCCAGAAGG		57	9134689	9134707	TCTTCTCGTACAGATCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13326	FBgn0033794	FBtr0087779	2	1	1	132	2R	9017613	9017686	AATCAGACACTAGCGATGC		59	9017499	9017518	TAAGATTCTCGCTCATCACG		59	NA	
Drosophila melanogaster	50	CG3955	FBgn0033793	FBtr0087780	1	1	1	264	2R	9016193	9016211	AAAGGGTGAACAAACTGTG		58	9015878	9015896	CAGGAATAGAGCTTGGTCC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835	3	6	8	110	2R	8504608	8504626	CCTGCATATTTACCCACTG		57	8504697	8505312	GACGTCTACCATTCTAAATCTG		58	NA	
Drosophila melanogaster	50	CG30056	FBgn0050056	FBtr0087823	1	1	1	105	2R	8449868	8449888	GAGATCCTGATTAACCATCAG		57	8449955	8449973	GATCGGAGATGGACATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33626	FBgn0053626	FBtr0091603	1	1	1	92	2R	8297919	8297937	GATATGGTTCAGGGAACCA		58	8297993	8298072	ATAGTAAATGGTACCCGGG		58	NA	
Drosophila melanogaster	50	Cpr49Ad	FBgn0033726	FBtr0087955	1	1	1	89	2R	8278730	8278748	TTCGTTCATTACACCCGAG		59	8278599	8278678	ACACCATCATAGGTGATCAC		59	NA	
Drosophila melanogaster	50	CG30047	FBgn0050047	FBtr0087905	2	1	1	96	2R	8241483	8241501	TAAGGACTCCGTATCTGTG		57	8241560	8241636	CAATAGTATCCTCGATCGTG		57	NA	
Drosophila melanogaster	50	RpS11	FBgn0033699	FBtr0088005,FBtr0088007,FBtr0088006	3	3	3	127	2R	8087085	8087348	CTGTGTTCAGAGATGTTGAG		58	8086977	8086996	CTTCTTGAAGCTCTTCTTGG		58	NA	
Drosophila melanogaster	50	CG33964	FBgn0053964	FBtr0100005	2	1	1	100	2R	8070834	8070852	GAACTACTTGACGGACCAG		59	8070916	8070934	ATAGGTCTTCTATGGCCAG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	MCPH1	FBgn0033664	FBtr0088055,FBtr0088056	2	2	2	82	2R	7785976	7786066	CAAACTACTCAACAGGATAAGC		59	7785915	7785933	TACCATTGGTTCCCATCAG		58	NA	
Drosophila melanogaster	50	Mtor	FBgn0013756	FBtr0088033	1	1	1	149	2R	7746852	7746870	GAGAACAACCAGAGTCAGG		59	7746983	7747057	AATCTCCACAGAGCTTTCG		59	NA	
Drosophila melanogaster	50	iotaTry	FBgn0015001	FBtr0088125	2	1	1	60	2R	7244374	7244393	GTGTCTATTCAGATCAGTGC		58	7244413	7244434	TGATCTCCTTGCTATAGATGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13217	FBgn0033590	FBtr0088194	3	1	1	247	2R	7124007	7124025	TGACACTCTTGGAATTGGA		58	7123778	7123796	GAACTTCTTGCCGAATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11883	FBgn0033538	FBtr0088284,FBtr0113063,FBtr0088283	1	3	3	90	2R	6527408	6527427	AATCATACAAGTTGTGCGTC		58	6527480	6527561	TCATCATCCATCAGCACAG		59	NA	
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	3	12	12	93	2R	6499952	6500255	GCATATGGACATGTATAACTCG		58	6500309	6500327	ATTCGTATAGTGCGGTTCC		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089353	1	1	26	163	2R	6419735	6419753	GGACATGACAATGGAGGAG		59	6405693	6419549	AGGTTAGTACGAAATCTTGGG		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	2	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421092	TAGTAAGGTAGCAAAGTAGGG		58	NA	
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414	3	10	10	73	2R	5991854	5991872	TGTCGACAGTCGATAAGGA		59	5991906	5992234	CATATCATCGTAACGTTCTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0088416,FBtr0088419	3	2	10	72	2R	5994288	5994975	CACTTAGCTAAACAGGCGT		59	5995011	5995029	AGTCCTTGTAGGAGTCCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	lectin-46Cb	FBgn0040092	FBtr0088475	3	1	1	213	2R	5703154	5703224	AAAGATGAACTGGTTTGGC		58	5703401	5703419	ATAGTTGCTGTAGTAGCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	trpl	FBgn0005614	FBtr0088471,FBtr0088472,FBtr0088473	1	3	3	81	2R	5649774	5650241	CTTCCTGTTCATCTTGATTCTG		59	5650283	5650301	CTTCTTCATCCTGGTCGTC		59	NA	
Drosophila melanogaster	50	CG1868	FBgn0033427	FBtr0088543,FBtr0088542	1	2	2	106	2R	5469713	5469731	GGCATTCGATGATCTAGAC		57	5469570	5469643	AAGTGCCTCCATCTATCTC		58	NA	
Drosophila melanogaster	50	shrb	FBgn0086656	FBtr0088623	2	1	1	88	2R	5030496	5030572	TCAGAATATGGACGTGGAC		58	5030426	5030444	AAATGGCATCGGAAATCTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG8788	FBgn0028955	FBtr0088581	3	1	1	87	2R	5027790	5028948	TACTTCTACATCATGTGGCG		59	5028997	5029016	CTTTAGACACGGATCAGGAC		59	NA	InUTR
Drosophila melanogaster	50	CG18659	FBgn0027561	FBtr0088627	2	1	2	86	2R	5013708	5014540	ATTTGCAATACTAATCCGGC		58	5013527	5013545	GAATCCCTTATAGGCGGTC		59	NA	
Drosophila melanogaster	50	CG8746	FBgn0033330	FBtr0088714	2	1	1	66	2R	4680367	4680386	GACATACGACTTACTCTCCC		58	4680415	4680433	GAGTTCATTCTGGGTTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30375	FBgn0050375	FBtr0088799	1	1	1	100	2R	4153820	4153838	GTCTTCCCATTAGACAGGC		59	4153681	4153699	CAGAGTGTTCGACTTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12822	FBgn0033229	FBtr0088842,FBtr0088841	3	2	2	158	2R	3719998	3720016	GACATTGAGACGATAACCC		57	3720138	3720215	ATAATTGCTCTGACCTTGG		57	NA	Nonspecific
Drosophila melanogaster	50	phr	FBgn0003082	FBtr0088839,FBtr0088838	3	2	2	60	2R	3713282	3713300	CAGTTTCTTACCCACTTGG		57	3713324	3713342	AGAACTCCTGTATGTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	esn	FBgn0028642	FBtr0089039,FBtr0089038	3	2	2	161	2R	3012688	3012927	TGCGATGAGATCATCTTCTC		59	3013051	3013069	GAACATTGTGTCGAAGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15237	FBgn0033104	FBtr0086212	2	1	1	144	2R	2696943	2696961	CCATACCCGGAATTGAGAC		59	2696750	2696768	TTCATCTGAATGTCGTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15909	FBgn0033090	FBtr0086122	1	1	1	60	2R	2570913	2570932	CCTATAATGAGGTCGTGCAG		59	2570955	2570973	TTCAGATAGACAACTGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12551	FBgn0033045	FBtr0086048	3	1	1	87	2R	1808648	1808666	GAAGGTTCCAAGCATTCAC		59	1808717	1808735	CTTTCTTTGACGACTCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10417	FBgn0033021	FBtr0086092,FBtr0086091	2	2	2	80	2R	1249152	1249172	AAGAGTCCTGATACTTCATCC		58	1249043	1249112	ATCCTCATTACCATCTTCGTC		59	NA	
Drosophila melanogaster	50	CG33347	FBgn0053347	FBtr0086090	3	1	1	125	2R	1243034	1243052	TTTAATCTGGAGGGACCAG		58	1243141	1243159	ATAATAGGATACTGCGCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17715	FBgn0041004	FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246	1	6	6	93	2L	22742091	22742164	ATAATGATCATGGCGGGTG		59	22742219	22742239	TTATGGTGTTTCCTAGTCCTG		59	NA	InUTR
Drosophila melanogaster	50	CG3262	FBgn0032986	FBtr0085953,FBtr0085954	1	2	2	60	2L	22240691	22240711	TTTCTCTTCCGTTAGACTCAC		59	22240733	22240751	ATTACAACAGGCACTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycK	FBgn0025674	FBtr0085942,FBtr0085941	3	2	2	60	2L	22129323	22129341	TGCAGACCATCAAATTCGA		59	22129281	22129300	GCGTACTTTAGGAGAAAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1416	FBgn0032961	FBtr0085903,FBtr0085904,FBtr0085905	3	3	3	114	2L	21759359	21760490	AAGAAACTTCATCCAGCAC		57	21760568	21760586	GTCTGTTTGATGCTATGCC		58	NA	
Drosophila melanogaster	50	crc	FBgn0000370	FBtr0100139,FBtr0081512	1	2	3	89	2L	21312033	21312106	CTTTGCAAATGGCATTACTC		57	21312158	21312176	ATCTCCTCATCACTAAGCA		57	NA	
Drosophila melanogaster	50	rtGEF	FBgn0015803	FBtr0081357,FBtr0112885,FBtr0081356,FBtr0112884	2	4	4	80	2L	20355989	20356088	CATACTGGATAAGTACAAGGAC		57	20356129	20356147	GTGAGCACAAGTAATCCAG		58	NA	
Drosophila melanogaster	50	CG10237	FBgn0032783	FBtr0081207,FBtr0081209,FBtr0081208	2	3	3	92	2L	19437120	19437677	GTCTTCTAGAAGCGGAGAC		59	19437046	19437064	TTTCCGGGTAATACTTGCA		58	NA	
Drosophila melanogaster	50	hkl	FBgn0086441	FBtr0081145,FBtr0081144	1	2	2	106	2L	19047789	19047807	ACCTTGCATATACTGGCTG		59	19047965	19047983	CCTCCCGTTCCTTAATACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31739	FBgn0051739	FBtr0080919	1	1	1	162	2L	16827878	16828058	ATCCTTTCAACATGGGTGG		59	16828182	16828202	GACAGCTCAACAAATAATCCG		59	NA	
Drosophila melanogaster	50	CG31816	FBgn0051816	FBtr0080868	2	1	1	60	2L	16542677	16542696	ATAAGCAGACCAAAGAATGG		57	16542716	16542737	GTGGTAAGATTATCCTTAGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876	3	7	7	169	2L	16472183	16472201	GAATATTCAGAGCCTGCTC		57	16469244	16471862	TCTGGTAAAGCACTCTCAG		58	NA	
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0080711,FBtr0100613,FBtr0080712	2	3	7	174	2L	15261626	15261725	TGGAAATTGAATGCGATACG		58	15261471	15261491	GTCCTAAACGTTGTAGTTGTG		59	NA	
Drosophila melanogaster	50	CG3994	FBgn0028516	FBtr0080715,FBtr0080714	2	2	2	221	2L	15230349	15236617	TGGTGAATGTCATCATGGG		59	15230146	15230164	TTTGGTAGGAGAACGTTGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	vig	FBgn0024183	FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720	3	4	4	85	2L	15065447	15066946	GATAGAACTGGTGTGAAGTC		57	15065381	15065399	ACATCATCAATAGCCTCCT		57	NA	
Drosophila melanogaster	50	CG7532	FBgn0028915	FBtr0080640	1	1	1	219	2L	14349764	14351458	GATATGTTCCGTTTGTTGGT		58	14349495	14349513	TCATGAAGCCAAGGAACTC		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	bgm	FBgn0027348	FBtr0080590	1	1	1	80	2L	14015965	14015984	ACAATTATGGCGACTATCCT		58	14016024	14016142	GCTCATATTGTTTGTAGGTGAC		59	NA	
Drosophila melanogaster	50	DnaJ-H	FBgn0032474	FBtr0080494,FBtr0080493	2	2	2	82	2L	13164329	13164348	TTTACCTTCATGGGTCTCAG		59	13164154	13164172	TTCTTGTCGTCCCTTATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020	3	17	17	87	2L	12723993	12724013	AAGACCTATCAGATCAGACAG		58	12724062	12724215	ATTTGAGCACCTTAATGCC		58	NA	
Drosophila melanogaster	50	rho-6	FBgn0032415	FBtr0080359,FBtr0080360	1	2	2	195	2L	12130996	12131014	GTGGTCTATATGGTGGGTG		59	12130751	12130772	CATCGCTGAGTAACAATATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6766	FBgn0032398	FBtr0080308	3	1	1	87	2L	12040191	12040273	CAGAGTTGTCTCCAATTACTC		58	12040124	12040142	ATTTCGTACGACCAGTAGG		58	NA	
Drosophila melanogaster	50	CG12264	FBgn0032393	FBtr0080290	2	1	1	60	2L	12000812	12000830	CATGTCATCAGGAATGGTG		58	12000854	12000872	CAAACGACAAATTCAGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31705	FBgn0028490	FBtr0080244,FBtr0080243,FBtr0080242	1	3	3	74	2L	11524599	11524617	TGTTTACTATCCACAGGCG		59	11524475	11524493	AATGCTCCAGCGATAAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	lectin-33A	FBgn0040096	FBtr0113317	2	1	1	60	2L	11002518	11002536	CGAAGAGGATTGTGTTGGA		59	11002556	11002578	CTCTATATCGTGATACCCAAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7300	FBgn0032286	FBtr0080125,FBtr0080126	3	2	2	60	2L	10695948	10695969	GAAGCTGGTCATCTAAATATCC		58	10695909	10695927	TAGATGCAGCTTGAGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17107	FBgn0032281	FBtr0080107	2	1	1	288	2L	10681992	10682010	TGAAGTTCCTGGCTATCTG		58	10682262	10682280	TATCCATGTCTGCCATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5091	FBgn0032234	FBtr0080005	2	1	1	146	2L	10381312	10381385	TTTCATTTCAAGTGCACGAG		59	10381493	10381512	CCAACAATTCATCTCTTGCT		58	NA	
Drosophila melanogaster	50	CG13139	FBgn0032230	FBtr0080002	1	1	1	158	2L	10365531	10365549	GATCGCCCTAATGAATTCC		58	10365671	10365779	AGCATGAATCTGAATGCTC		57	NA	
Drosophila melanogaster	50	CG4953	FBgn0032204	FBtr0079984	2	1	1	87	2L	10267722	10267802	CTCTATTGCATCAAGCCCA		59	10267853	10267871	AGACGATGTCCAGTTTACC		58	NA	DesignRelaxed
Drosophila melanogaster	50	gcm2	FBgn0019809	FBtr0079838,FBtr0079837	1	2	2	82	2L	9611429	9611447	TAGCAAGGTTCTTAAGCGT		58	9611493	9611570	TGCCACAGGCATTATACTG		59	NA	
Drosophila melanogaster	50	CG32982	FBgn0052982	FBtr0079771	2	1	3	167	2L	9127415	9127433	CACAACCATGAATCGTGAG		58	9154756	9156506	ACAAAGTATCGCTCCTTCC		59	NA	
Drosophila melanogaster	50	fu12	FBgn0026718	FBtr0079704,FBtr0079703	2	2	2	61	2L	8450610	8450631	GTGATAATGAACCACCAAAGTG		59	8450570	8450588	ATCACAGGCCACAAATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Peritrophin-15a	FBgn0040959	FBtr0079713	3	1	1	293	2L	8396054	8396072	CAATTGCACCATGAAGTCC		59	8395708	8395726	TGCAATCAACAGTAAGCAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG8419	FBgn0031999	FBtr0079589	3	1	1	81	2L	8208386	8208457	ACTTGATTTGGAGAAACGC		58	8208502	8208520	TACATCAGCACCAATCTCG		59	NA	
Drosophila melanogaster	50	cup	FBgn0000392	FBtr0079298	1	1	1	92	2L	6665778	6668346	AAACGGAGTTCCAAGATCC		59	6668402	6668420	AGTCTTCGTCGTTGTAACC		59	NA	
Drosophila melanogaster	50	CG31635	FBgn0051635	FBtr0113410,FBtr0079326	3	2	2	127	2L	6640198	6640369	CTCGTCAATTTATGCCGTG		59	6640089	6640107	TCCAAGCTATGGTTGTAGC		59	NA	
Drosophila melanogaster	50	CG11320	FBgn0031837	FBtr0113026	3	1	1	139	2L	6617359	6617437	ATAACCGTGCACCATAAGG		59	6617177	6617195	ATTATCCAAAGCGGTTGGA		59	NA	
Drosophila melanogaster	50	Gef26	FBgn0021873	FBtr0079249	2	1	1	86	2L	6325594	6325722	AGCATGGATAGTCTTACCG		58	6325772	6325790	TACTTCCACATCTTCCTCG		58	NA	
Drosophila melanogaster	50	cl	FBgn0000318	FBtr0079095	3	1	1	137	2L	5520502	5520520	CAAGGACGAGAAAGGAGAG		59	5520694	5521147	AAATCCTTCCAGTATGCCC		59	NA	Nonspecific
Drosophila melanogaster	50	Bsg25D	FBgn0000228	FBtr0079085,FBtr0079084	2	2	3	99	2L	5274074	5274092	GATTCCAAGGATGAAGCCA		59	5273565	5273583	ATGTTTCCGAAGTGGTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Bsg25D	FBgn0000228	FBtr0079083	1	1	3	144	2L	5275753	5276943	GAGTTCAGCAATTGGAGAC		58	5275627	5275645	AATGCCTTAGTTAGCTGCT		58	NA	
Drosophila melanogaster	50	Marcal1	FBgn0031655	FBtr0078992	3	1	1	93	2L	4957676	4957755	GACTGGAATCCTAGCACTC		59	4957812	4957830	TGTGAGCAATCAGATAGCG		59	NA	
Drosophila melanogaster	50	CG2837	FBgn0031646	FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403	2	4	4	164	2L	4904903	4904923	GTTTACTCCAATATACCACCG		58	4904700	4904721	CTTGTTGAACGATTGATCATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mRpS2	FBgn0031639	FBtr0077408	2	1	1	66	2L	4849666	4849684	CCAACCTGATCACCTATCC		59	4849618	4849636	TTGCAATAGAGCTCCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3714	FBgn0031589	FBtr0077481	2	1	6	91	2L	4190819	4193322	ACGATGTTAAGAGGAGTGG		58	4190746	4190764	GTCGATTCGAATTCCAAGC		59	NA	
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305	1	4	10	179	2L	3626210	3634250	ATGTCATGGAAGATGGACG		59	3626049	3626067	TGATGGTCTGAAAGCACTG		59	NA	
Drosophila melanogaster	50	CG8853	FBgn0031550	FBtr0077529	2	1	1	242	2L	3531823	3531842	TTTGAACAATGAGCTCAAGC		59	3532399	3532417	GTGTCATCCTTCAGTTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3332	FBgn0031514	FBtr0077608,FBtr0077609	1	2	2	82	2L	3276462	3276540	GATAACGGGCATGATCCTC		59	3276398	3276417	GATTGTCCAGATCCATCGAG		59	NA	
Drosophila melanogaster	50	colt	FBgn0019830	FBtr0077734,FBtr0077732,FBtr0077733,FBtr0077731	3	4	4	69	2L	2769058	2769077	CAAGCTATACAAGGAGGGTG		59	2769008	2769026	CAAATCCCTGAGCATTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15387	FBgn0031403	FBtr0077841	3	1	2	70	2L	2226060	2226078	TGATTCTCATGATGCAGCA		59	2225951	2225969	CCCATGACCCTTAATGACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14352	FBgn0031351	FBtr0077876	3	1	1	61	2L	1612340	1612358	TCTCGAAGCGGAAATACTC		59	1612383	1612401	CTTAGGATGAAGCCTTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lectin-21Cb	FBgn0040106	FBtr0078046	1	1	1	60	2L	620647	620665	TGTACTTAATCCGCAAGCA		59	620605	620623	ACCAGATTGCTAATGTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31974	FBgn0051974	FBtr0078150	1	1	1	80	2L	141443	141462	ATTACAACGCCTTCATTCAG		58	141327	141401	CCTCTTCGAGAAACAATTCG		58	NA	
Drosophila melanogaster	50	CG1724	FBgn0031164	FBtr0077257	1	1	1	64	X	21073783	21073801	CAGAACGATCTAGGCAGAG		59	21073737	21073755	TTAATATCGCCTGATCCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1835	FBgn0031127	FBtr0077277,FBtr0077278	2	2	2	111	X	20539514	20540148	GCAATTGTGTTTCTATGGCA		59	20540222	20540240	GACTGTTGTCTCTACTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9572	FBgn0031089	FBtr0070006	3	1	1	230	X	20044240	20044259	TTGTCTATAGAGATCCGGTC		57	20044813	20044831	GATTAACGCAGCGATTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cdc42	FBgn0010341	FBtr0074751,FBtr0074752	2	2	2	232	X	19592047	19592066	GCTCATCTCGTATACAACCA		59	19592261	19592340	ACTTCTCCTTGACGTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	B-H1	FBgn0011758	FBtr0074430	2	1	1	254	X	17295640	17295658	GTACCTTAGCGTTCAGGAG		59	17296010	17296028	ATGTCTATGTTCGTGTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	PGRP-LE	FBgn0030695	FBtr0074183	3	1	1	161	X	15695627	15695717	AGTGCTTCCACATTGAGTC		59	15695484	15695503	TGAAGCATCCAATGAAACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8128	FBgn0030668	FBtr0074053	2	1	1	72	X	15592705	15592795	CAAGAGCATACTCGTCCTC		59	15592831	15592849	GCAAATCGATCCGTAATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6340	FBgn0030648	FBtr0074038	2	1	4	139	X	15377319	15377337	AACAATAACTATGGCAGCG		58	15377440	15378567	TTTGACTCATCAATGCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Grip128	FBgn0026433	FBtr0074075,FBtr0100271	1	2	2	138	X	15362477	15362559	GATCACGGATTCCTGTCTG		59	15362357	15362376	GTTTGGTCGGGATTATAGGT		59	NA	InUTR
Drosophila melanogaster	50	CG11092	FBgn0027537	FBtr0073828	2	1	1	91	X	13718172	13718190	GGTAAAGCTTGAGGGTCAG		59	13718245	13718336	ACAATACGACGTATACCGC		59	NA	
Drosophila melanogaster	50	CG9938	FBgn0030500	FBtr0073850	3	1	1	187	X	13505495	13505515	TATTGCGGATCTATTCAGTCG		59	13505260	13505346	GCCATGATTTGTTCACCTG		59	NA	
Drosophila melanogaster	50	Tango10	FBgn0030330	FBtr0073553,FBtr0073552	3	2	2	167	X	11616428	11616571	AGGAGCGATTTAAGATCGC		59	11616701	11616720	GACTCAAGTACAGTGATGTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	mxc	FBgn0005639	FBtr0071312	1	1	1	70	X	9138110	9138128	GAATTCTACTTCGGTGACG		57	9138162	9138240	TATGGATCCTGCTCTACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12056	FBgn0030099	FBtr0071305	3	1	1	72	X	9087183	9087201	GGACTACGTCTACAAGGGA		59	9087237	9087255	ATGATGATAGGTGGTCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2263	FBgn0030007	FBtr0071190	1	1	1	60	X	8038815	8038833	GTTCCGGCAGATATTCCTC		59	8038773	8038793	TTCCACATAGTTGTTCGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tom40	FBgn0016041	FBtr0071074	1	1	2	122	X	7631708	7631915	AGTGCAAAGATATCCAGGC		59	7632001	7632019	GATATCCACTGGGTACCAC		58	NA	
Drosophila melanogaster	50	CG15035	FBgn0029949	FBtr0071063	3	1	1	60	X	7297094	7297112	GGATATCGAAGAAATGCGC		59	7297052	7297070	CAGTTGTTCACAGCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100214,FBtr0100200,FBtr0100205,FBtr0100201,FBtr0100206	2	5	15	191	X	6982728	6982746	GAAAGACACTCACTGACTC		57	6979978	6981655	ATTCTGTATCCATTCCGGA		57	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG4575	FBgn0029920	FBtr0071000	2	1	1	64	X	6844582	6844820	TATGGAGGCCTTTCAAACTC		59	6844847	6844865	TCGTAGTATGCGGTATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3184	FBgn0029892	FBtr0070989	3	1	1	62	X	6582486	6582504	GAGCAGTGAGTGTAATCCC		59	6582442	6582460	TCGTACAATTCCATCTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3224	FBgn0029885	FBtr0070992	2	1	1	80	X	6555058	6555079	GAACTGATCAATCAGAATGTGG		59	6554999	6555017	GATGAAGTACTTGGCACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL7A	FBgn0014026	FBtr0070915,FBtr0070916,FBtr0070917	3	3	3	158	X	6425464	6425885	GATGTTGATCCTCTGGAGC		59	6425324	6425342	CTTGTCGTTGTTATCGACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Marf	FBgn0029870	FBtr0070909,FBtr0070910,FBtr0070908	2	3	3	104	X	6262081	6262568	CCAGGAATCGGTTAAGTCTC		59	6262635	6262653	ACGAAGAATACCCTTTCGG		59	NA	
Drosophila melanogaster	50	Nmd3	FBgn0023542	FBtr0070425	2	1	1	111	X	2077579	2077657	GCAGGTCTATTTCAGAGCT		59	2077486	2077504	AGGATAGGTCTTTCGATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp4d14	FBgn0023541	FBtr0070426	2	1	1	89	X	2068504	2068523	ATTTACCTACGTTCAGTCGG		59	2068371	2068389	TTCATGGTGAAATCCAAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14781	FBgn0026871	FBtr0070258	3	1	1	68	X	1371536	1371554	GGATCTCAAGAAGGAGTCC		58	1371586	1371604	TTGGGCTTGATAGTGAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fz3	FBgn0027343	FBtr0112928	2	1	2	60	X	671933	671951	TGTCTTTCCTCTGCTATCC		58	671975	671993	CCGTGGTTATCAATCACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41545	FBgn0085680	FBtr0114129	1	1	1	60	U	9635860	9635878	AAACTGAAGTTGAGTGGTG		57	9635902	9635920	AATCCAGTGGTTTATTGCC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17471	FBgn0039924	FBtr0100543,FBtr0100544	2	2	2	82	4	1216408	1216477	ATACCATCCGTACGTTGTG		59	1216344	1216363	CGCTTTCTACAGTGATACGA		59	NA	
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089210,FBtr0089215,FBtr0089211,FBtr0089213	1	7	7	82	4	1079778	1079796	TAACCAGACAACGAATCCT		58	1079118	1079732	ATGTAGAAGAGCTCTTGCC		59	NA	
Drosophila melanogaster	50	myoglianin	FBgn0026199	FBtr0089093,FBtr0089092,FBtr0089095,FBtr0089094	1	4	4	85	4	713460	714015	TTCCCGAGGAAATTCAACC		59	713393	713413	CAAGTCTGAGTAGCTACTGTC		59	NA	
Drosophila melanogaster	50	CG11539	FBgn0039859	FBtr0085868	2	1	1	67	3R	27441573	27441591	GACCTTAGAAGAGGAGCAC		59	27441524	27441542	CAATGAAGGTCAGCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34041	FBgn0054041	FBtr0100096	1	1	1	80	3R	26334889	26334953	ATTGACGAAGCCCTTATCG		59	26334996	26335015	CACTGGACTAGATGCTATGG		59	NA	
Drosophila melanogaster	50	mRpS18C	FBgn0039765	FBtr0085625	3	1	1	80	3R	26249985	26250003	ACTACAAGAACGTGAAGCT		58	26250047	26250065	ATAATCCGGTGATGTGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15531	FBgn0039755	FBtr0113309,FBtr0085572	1	2	2	110	3R	26021244	26021262	GTCTTCTGAAGTACTCGCC		59	26021090	26021171	ACAGCAGGACATAGAATCTC		58	NA	
Drosophila melanogaster	50	CG7920	FBgn0039737	FBtr0085604	3	1	2	213	3R	25840612	25840630	AACTACTTCACCTACGTGC		59	25840417	25840436	AACCGAAAGATTGCAAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1972	FBgn0039691	FBtr0085476	1	1	1	123	3R	25572450	25572523	GATGCCAAAGGCATTATGC		59	25572610	25572628	TTTCCAGGTTGAATTCGTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	Dup99B	FBgn0024381	FBtr0089608	3	1	1	61	3R	25540973	25540991	GGAGTGGATCCAAAGTCAG		59	25540877	25540896	GGTAGGGTCCTAAGTTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1907	FBgn0039674	FBtr0085447	2	1	1	193	3R	25445364	25445453	CTAGACTTGGTCAAGACCC		58	25445609	25445628	TTCAGATACGTGTACATGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1957	FBgn0027873	FBtr0085358,FBtr0085357	1	2	2	60	3R	24862476	24862494	ACGATGAGATTCCTATCCA		57	24862517	24862536	TTAAAGTCGGACAGTTTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12558	FBgn0039599	FBtr0085311	2	1	1	60	3R	24616246	24616264	GCAGCTTAGTCAGCTAGTC		59	24616286	24616306	AGAAGATCCGTAAACTGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9997	FBgn0039597	FBtr0085314	1	1	1	60	3R	24582414	24582435	TCCGAATAATGACACAGTACAG		59	24582375	24582395	ATTGGTCAAGGTAACTACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12426	FBgn0039552	FBtr0085227	2	1	1	66	3R	23697806	23697824	TGGTTCTCGTCATATTCCG		59	23697645	23697777	TTAAACGTCATCGCAATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5934	FBgn0039505	FBtr0085158	2	1	1	156	3R	23099966	23099985	TACATCGAGAACCTGATGTC		58	23100104	23100122	TACATGTAGCTCTAGCGTG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG34129	FBgn0083965	FBtr0110870	2	1	1	60	3R	22016589	22016608	CGATAGGGAGAACTATGCTG		59	22016548	22016569	CTGGTAGATAAATTTCTCGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5039	FBgn0039356	FBtr0084900	2	1	1	146	3R	21504866	21504939	CTCCACATTCAGGATGGAG		59	21505048	21505067	TACTTGTAGTAGAGGCACGT		59	NA	InUTR
Drosophila melanogaster	50	msi	FBgn0011666	FBtr0084881,FBtr0084882	1	2	2	133	3R	21425813	21425831	CCTCATATCACAGAACCCA		58	21425928	21426005	AGTAGGGTGCATATCTGAC		58	NA	
Drosophila melanogaster	50	CG13658	FBgn0039315	FBtr0084826	3	1	1	183	3R	21114182	21114201	CTCCATCTTCATGGTAATGG		57	21114346	21114430	GGTCATCATGAAGAATTCGT		57	NA	
Drosophila melanogaster	50	ssh	FBgn0029157	FBtr0084800,FBtr0084799	1	2	2	99	3R	20769070	20769088	CAGTAACAGTACGCAAAGC		59	20768924	20769007	CTTGACAGCCATCTTTAGC		58	NA	
Drosophila melanogaster	50	CG11168	FBgn0039249	FBtr0084715	2	1	1	111	3R	20745204	20745222	GTATCTACGTACACGCCAC		59	20745297	20745655	TGGGTGAACTCGTTTATGG		59	NA	
Drosophila melanogaster	50	CG7006	FBgn0039233	FBtr0084704	3	1	1	207	3R	20676482	20676551	CTGTCCAAATACATTGGCA		57	20676722	20676740	CCGTGATATGGAACTTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	atl	FBgn0039213	FBtr0084656,FBtr0084657	1	2	2	91	3R	20459010	20459028	GTGGGTCTCTATACGTTCG		59	20459081	20459163	CCGCTATATCTAATGTAGGCC		59	NA	
Drosophila melanogaster	50	CG13617	FBgn0039201	FBtr0084641	1	1	1	83	3R	20343181	20343202	CCAAAGGTATTTCGCATAACTC		59	20343246	20343322	GTGGATGTTGCAGTTTCAG		59	NA	
Drosophila melanogaster	50	CG13826	FBgn0040590	FBtr0084391	2	1	1	60	3R	19048541	19048559	AGACCAACATTTGGAAAGG		57	19048499	19048519	CGAAGCCTTTCAATACTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17110	FBgn0039050	FBtr0084350	1	1	1	105	3R	18920033	18920109	TACATTGTGGCAACTTCGA		59	18920176	18920196	CAGCTTATCCATCACAAAGTG		59	NA	
Drosophila melanogaster	50	CG17244	FBgn0039031	FBtr0084340	1	1	1	130	3R	18803189	18803207	AATATTCCCGAAATCCCGA		58	18803301	18803319	CTGGTCTGGTTATTGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Takl2	FBgn0039015	FBtr0084325	1	1	1	132	3R	18559169	18559187	AAGCAAGCCAAGTTATTCG		58	18558681	18558699	TAGCAGTGTATTGAGTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18596	FBgn0038953	FBtr0084216	2	1	1	97	3R	18205006	18205024	GTACCTGTGAAGTTCTGGG		59	18205085	18205171	TTTCTCAGCAGTCATGCTC		59	NA	
Drosophila melanogaster	50	CG31465	FBgn0051465	FBtr0084147	2	1	1	92	3R	17708830	17708848	AATCAATCGTCGGAAGAGG		59	17708961	17708979	CCAGGATCCGTTTAGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	lbl	FBgn0008651	FBtr0084092	2	1	1	152	3R	17236916	17236934	CAAGAAGAAACGCAAGTCC		59	17236494	17236800	AACCAAGTGATGACCTGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG17278	FBgn0046763	FBtr0084047	2	1	1	60	3R	16847164	16847182	CAAGACCTATCGCAATCTG		57	16847022	16847141	AAAGTTTGCATTCTGGAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4686	FBgn0038739	FBtr0083816	3	1	1	240	3R	15690791	15690809	CGGATCACTCTATCGACTG		59	15691013	15692147	CAAAGTGCCAGTGAATACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34286	FBgn0085315	FBtr0112482	1	1	1	76	3R	15541501	15541520	TGTTGTAATCGTACTCATCC		57	15541388	15541462	AGCTTTCCAGATGAATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nup58	FBgn0038722	FBtr0083781	3	1	1	102	3R	15471796	15471878	CAAGATGGCATCAAGATTAAGG		59	15471941	15471959	CAGAGGAGATGGTCTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31246	FBgn0051246	FBtr0083514	3	1	1	120	3R	13637506	13637524	GCTTAAACGGGAGAATTGC		59	13639333	13661885	GTTGTATTCGATGCTGTCAC		59	NA	InUTR
Drosophila melanogaster	50	CG34035	FBgn0054035	FBtr0100090	3	1	1	192	3R	13238974	13239051	TCCAGATTATGAGTTGACCA		58	13239734	13239752	AACAACTTCCTCCGTATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cad89D	FBgn0038439	FBtr0083306	3	1	1	81	3R	12316385	12316403	CTCATCACCAATCTCACCA		58	12316238	12316343	TGTTGATCTCTTCTATGACAGG		59	NA	
Drosophila melanogaster	50	CG17931	FBgn0038421	FBtr0083322	3	1	2	60	3R	12185362	12185437	CTAACAATGACAAACGAGACTC		59	12185323	12185342	TACAGTAGTAATCCAGGCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG12784	FBgn0038356	FBtr0083169	3	1	1	60	3R	11589108	11589126	TGAAAGATGGTCTCATGGC		59	11589147	11589168	CCAGATATAAAGTTCGTACACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5073	FBgn0038331	FBtr0083094	2	1	1	81	3R	11198475	11198578	GAGACCATCAAGGAAATCG		57	11198623	11198641	TTACGCCAGGTATAAACGA		58	NA	
Drosophila melanogaster	50	Surf4	FBgn0019925	FBtr0083118,FBtr0083117	1	2	2	80	3R	11170643	11170661	TTTAAGGTCGACATAGCGG		59	11170516	11170534	GAAGTCCCACAGAATGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7987	FBgn0038244	FBtr0082978,FBtr0082979	2	2	2	76	3R	10400293	10400311	GGTAATCACAGACGACTGG		59	10400170	10400188	TAATCCCAGCTATCTGCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	pr-set7	FBgn0011474	FBtr0082929,FBtr0082928,FBtr0082930	2	3	3	146	3R	10142453	10142471	AAATCTGCTGGAGGATCAG		59	10142581	10142670	AAGGGAACTCCTATTGTGC		59	NA	
Drosophila melanogaster	50	Ravus	FBgn0038128	FBtr0082779	1	1	1	61	3R	9088905	9088923	CACCATAACGCCTATACAC		57	9088862	9088880	GTTGATAAGATTGCAGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	beat-Vb	FBgn0038092	FBtr0082684	1	1	1	94	3R	8759112	8759133	CTTTAATGACTTCGTAGAGGTC		58	8759187	8759265	CCAGAGAAACCTTTATCCCA		59	NA	
Drosophila melanogaster	50	CG17404	FBgn0038001	FBtr0082622	3	1	1	62	3R	8050128	8050149	CTTTCCCTTCTTGGATAATGTG		59	8050087	8050105	ATGGTGTGGTAACTCATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CoVa	FBgn0019624	FBtr0082473	3	1	2	244	3R	7645124	7645288	GCGACAGTTATAAACGTGTC		59	7645560	7645579	CTGAAGTACTTCTCGTAGCG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG31374	FBgn0051374	FBtr0082400,FBtr0082401,FBtr0082399	3	3	3	85	3R	7264081	7264157	GAGTATCCTCAAGGAGGAG		57	7264014	7264032	CTTCGTCTAGCTTCATGGA		58	NA	
Drosophila melanogaster	50	CG4655	FBgn0037839	FBtr0082282	1	1	1	80	3R	6665262	6665348	CGATACTAGCCAATGATGC		58	6665392	6665410	GCACGATAACCACTATCTC		57	NA	
Drosophila melanogaster	50	Rbp1	FBgn0010252	FBtr0082277	1	1	4	91	3R	6610563	6610581	GTAGAGATGTCTTCGGGTC		58	6610636	6611133	GGAGTTATCCTGTAGCGTC		59	NA	
Drosophila melanogaster	50	MtnA	FBgn0002868	FBtr0082158	2	1	1	77	3R	5610016	5610036	CCTAAATAGCCCATACCTACC		59	5609959	5609977	GCAAGGCATCTTGATTGAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12950	FBgn0037736	FBtr0082170	3	1	1	81	3R	5563185	5563269	TATACAATATGTCCCGGAAGC		59	5563124	5563144	GTAGACATCTGTTCCTTCTCG		59	NA	
Drosophila melanogaster	50	pum	FBgn0003165	FBtr0081993,FBtr0081991,FBtr0081992,FBtr0081990	2	4	5	91	3R	5043824	5043935	GACGACAACGATAAGTCAC		58	5043751	5043769	GAGTTTGTGACCTGATCGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG17944	FBgn0037500	FBtr0081589	3	1	2	90	3R	3187468	3187486	GATTTCGGAATGAGACGAG		57	3187294	3187416	GGTGCTCATTATTATAGGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lap	FBgn0086372	FBtr0081572	3	1	1	82	3R	3015981	3016453	GCAATGAGCGATTTATGCA		59	3016498	3016517	TTGTACAGTTCCTTTGTCCA		59	NA	
Drosophila melanogaster	50	Fer1	FBgn0037475	FBtr0081567	1	1	1	60	3R	2963287	2963305	CTACGAGAAGCGACTAAGC		59	2963590	2963610	GAAGGTTATGTAGCTTATGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31560	FBgn0051560	FBtr0078609	2	1	1	60	3R	2135938	2135958	GAGTCAATCAAATCGGAACAG		59	2135980	2135998	TAGTGGTAGCAGAATCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1103	FBgn0037235	FBtr0078909,FBtr0111220	1	2	2	60	3R	164025	164784	GTGTATACCTTTGTTCGGAC		58	164807	164825	TAGTAAGTAGCCAGAGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14565	FBgn0037129	FBtr0078452	3	1	1	87	3L	21737099	21737117	CTTTACATGAGGATAGCGC		58	21737030	21737048	TCAATTTCATGGAGTCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14572	FBgn0037128	FBtr0078434	3	1	1	76	3L	21734688	21734706	TCTACCCGTTATCCTTTGC		59	21734746	21734764	CATACCGGTTGATCCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED1	FBgn0037109	FBtr0078464	1	1	1	81	3L	21626068	21626086	CCTCAAGAAACAAGCTCTC		58	21625929	21626026	GCTGTCCATATCATTATACTGC		58	NA	
Drosophila melanogaster	50	croc	FBgn0014143	FBtr0078395	2	1	1	62	3L	21468445	21468463	TATCCCTACCACTTGAACG		58	21468401	21468419	GACATGATGCATCTGACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10586	FBgn0037036	FBtr0078335	2	1	1	66	3L	20949266	20949284	CACGGTATCAGTACCTGTG		59	20949105	20949236	TATGGAGACTGATTCCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7757	FBgn0036915	FBtr0074892	3	1	2	129	3L	19904505	19904524	TCAGTTATACTGACCCAGGA		59	19904616	19904688	GTTTCAAGGGCTCATTTGG		59	NA	
Drosophila melanogaster	50	Cat	FBgn0000261	FBtr0075058	3	1	1	177	3L	18820346	18820461	CTACTTTGCTGAGGTGGAG		59	18820602	18820620	AATCTTCACCTTGTACGGG		59	NA	
Drosophila melanogaster	50	CG5103	FBgn0036784	FBtr0075132	2	1	1	271	3L	18286762	18286780	GAACAAGATCTTCTGCTCG		58	18286445	18286527	TCTGCAAATGCTTGATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	blot	FBgn0027660	FBtr0075235,FBtr0075233,FBtr0075234,FBtr0075232	1	4	4	128	3L	17391426	17391508	GTTGTAATGCTGTGCACAC		59	17391316	17391334	GTAGTGACGACTGAAGGAG		59	NA	
Drosophila melanogaster	50	Papst2	FBgn0036695	FBtr0075279	2	1	1	156	3L	17037247	17037330	TACCTTACAATATCTGTGGTCG		59	17037447	17037465	GATGAGGAATTTGCGACTC		58	NA	
Drosophila melanogaster	50	CG13033	FBgn0036638	FBtr0075400	3	1	1	62	3L	16537920	16537939	GATACCACTATCGTACTCCA		57	16537877	16537895	GAGGCAGATACTCCTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dcp2	FBgn0036534	FBtr0075540,FBtr0100528,FBtr0075539,FBtr0075538	2	4	4	152	3L	15816272	15816355	TTGTTCCAACACATTCCCT		59	15816138	15816156	GAAGTAGGACTGCACTAGC		59	NA	
Drosophila melanogaster	50	Eig71Ee	FBgn0004592	FBtr0075585	1	1	1	147	3L	15648988	15649059	GTAAGCTTCTTTCTGCTGC		59	15648859	15648877	TAGATCTCACAGGTCCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9040	FBgn0036394	FBtr0075765	2	1	1	60	3L	13981211	13981230	AAGATGATGCTAGTACCTCC		58	13981252	13981271	GAACTACCTGTATCGGAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14147	FBgn0036112	FBtr0076194	3	1	1	60	3L	10966109	10966128	GGATCATCATTTGGATCACC		58	10966151	10966169	CTCATGGTGGTACACTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34237	FBgn0085266	FBtr0112431	3	1	1	300	3L	10618496	10618514	CCATAGAGATTCATTGCCC		57	10618029	10618108	AAACTCAATTGCCATGGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG6718	FBgn0036053	FBtr0076362,FBtr0076363,FBtr0076365,FBtr0076364	1	4	4	102	3L	9854030	9854111	TCTCTACCATTGGCAATCTG		59	9853947	9853965	AAGTAGGGTATGCCAATCG		59	NA	
Drosophila melanogaster	50	CG6902	FBgn0035899	FBtr0076657	2	1	1	61	3L	8484483	8484501	TCTGTGCGTGTTATTTGAC		58	8484440	8484459	ATCTCGCAGACATGATATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7366	FBgn0035855	FBtr0076721	1	1	1	60	3L	8194729	8194747	TGCGGAACGATATGATCAC		59	8194687	8194707	GTATTCTCGAAACTGAGATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13676	FBgn0035844	FBtr0076732	3	1	1	84	3L	8138574	8138592	ACGAGATCCACTTCAAGTG		59	8138223	8138527	ACGCAATGGTGATAGATCTG		59	NA	
Drosophila melanogaster	50	Neos	FBgn0024542	FBtr0076835	3	1	1	60	3L	7235974	7235993	CTTAGCATCATGAACAAGCC		59	7236016	7236034	AAGTGGGATACATGAGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr65Eb	FBgn0035736	FBtr0076928	1	1	1	105	3L	7081709	7081798	CAACGTCGTTGTACTTGTG		59	7081622	7081640	CAGTTCGTTGACAAAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mdr65	FBgn0004513	FBtr0077011	1	1	1	81	3L	6237404	6237424	TGGAAACTTACCTTAGCTGTG		59	6237283	6237361	GCTTGCCTTGAAACTTAGC		59	NA	
Drosophila melanogaster	50	CG13296	FBgn0035687	FBtr0076997	1	1	1	62	3L	6156741	6156759	TTCTCCTTATGGGCATTCC		59	6156784	6156931	ACATGTAGCGACTATTTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lcp65Ag1	FBgn0020638	FBtr0077058	1	1	1	150	3L	6127982	6128000	TACATCGCCGATAAGAACG		59	6127850	6127869	TTCTCCTTGATAAGAACGGT		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG32232	FBgn0052232	FBtr0073373	1	1	1	60	3L	4996215	4996233	TGTACGATCACAGATACCA		57	4996173	4996191	GTAGTTGTAGTCCGAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13704	FBgn0035583	FBtr0073353	1	1	1	110	3L	4899024	4899042	TACTTGGTGATATGCCTGG		58	4900350	4900422	AAGGCCAGTGAAGTATCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ras64B	FBgn0003206	FBtr0073212	2	1	1	199	3L	4139253	4139918	CATCCAGAGCTACTTCGTC		59	4140137	4140155	AGCTGGAATGATCGTTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11526	FBgn0035437	FBtr0073083,FBtr0073084	2	2	2	104	3L	3322982	3323001	TTACTTCAAGGCCAATTACG		58	3322830	3322915	GATATTAGAGCAGCGATGG		57	NA	InUTR
Drosophila melanogaster	50	dro5	FBgn0035434	FBtr0073062	2	1	1	91	3L	3316845	3316863	AGTTCCTGTACCTCTTCCT		59	3316918	3316936	TCCTCCGTATCTTCCAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33159	FBgn0053159	FBtr0073104	1	1	1	60	3L	3204331	3204350	TATTTCGGAAGTTCCGTACC		59	3204290	3204310	TCCTCCACAGATAAAGTAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32276	FBgn0047135	FBtr0073107,FBtr0073106	1	2	2	60	3L	3198771	3198789	AATATGTGACAATGCGTGG		58	3198409	3198427	GGATATTGACCCTCTTTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7995	FBgn0035266	FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767	3	5	5	158	3L	1743700	1743718	CCATCTCCACGTACTTCTC		59	1743909	1743927	TTACATCCGTGATGTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33791	FBgn0035240	FBtr0091794,FBtr0091793	3	2	4	101	3L	1604964	1604982	CATGATCTGGACTCCTTCG		59	1605047	1605167	GTTCCAGGACTCATCTACG		59	NA	Nonspecific
Drosophila melanogaster	50	CG13917	FBgn0035237	FBtr0072747	3	1	1	116	3L	1598383	1598401	CATGAGTCTCGAGAAGGAG		58	1598540	1598559	GCGTCGATGAAGATTTAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	robl62A	FBgn0028567	FBtr0072695	3	1	1	64	3L	1477945	1477963	TGATAAGCTGTGCTTTCTG		57	1477991	1478009	CTTCCTCTGGACTAACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17129	FBgn0035151	FBtr0072612,FBtr0072614,FBtr0072613	2	3	3	60	3L	679095	679114	AGGTATCAAATTCCGACGAC		59	679054	679072	CTTGCTAAGGGATCACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4049	FBgn0034976	FBtr0072285	3	1	1	111	2R	19998282	19998366	TTGAACAAGAGTCCAAGCT		59	19998189	19998207	GCTTGGGTAGAATACTGGA		58	NA	
Drosophila melanogaster	50	CG5594	FBgn0025698	FBtr0072137,FBtr0072136,FBtr0072139,FBtr0072138	3	4	4	80	2R	19812003	19812024	CCGAAACTACTTCTAACAAGGA		59	19812065	19812149	TGAACTCATCCGGTTTCAC		59	NA	
Drosophila melanogaster	50	Nap1	FBgn0015268	FBtr0072219	2	1	1	60	2R	19793601	19793621	CGCAAGCTAATCGATATTTCC		59	19793498	19793516	GAAACTCCAAGGTGTACGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10320	FBgn0034645	FBtr0113102,FBtr0113101	1	2	3	213	2R	17545965	17545983	ATTGAAGGATCCATGGCTG		59	17546219	17546237	CTTATCTCCGTGTTCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33704	FBgn0053704	FBtr0091692	3	1	1	62	2R	16837736	16837757	GAGGAATATAACCATCCATTGG		58	16837780	16838068	ATGAGTTCGTTCCAGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13442	FBgn0034546	FBtr0086240	2	1	1	86	2R	16616808	16617429	TAATCCCGAACAACTCGTG		59	16616740	16616758	GTGCTAATCCAACACTCCA		59	NA	
Drosophila melanogaster	50	CG16742	FBgn0034529	FBtr0086228,FBtr0086227	3	2	2	60	2R	16515304	16515322	ACTGTTTGATGATAGCGAC		57	16515346	16515364	TTGGATACTAGGAGCTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34199	FBgn0085228	FBtr0112392	3	1	1	143	2R	16175139	16175215	CAAAGTTGCTTCTACTGCTG		59	16175321	16175339	GGATAGCAGGCACATACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7735	FBgn0034446	FBtr0086534	2	1	1	82	2R	15332073	15332146	CATGAGATTTGTGGTGGTC		58	15332192	15332210	AGAGAATTGGCACAATTCG		58	NA	
Drosophila melanogaster	50	Jheh3	FBgn0034406	FBtr0086622	3	1	1	97	2R	14748811	14748829	AAACATCACGGATTACGCT		59	14748664	14748682	TTTCAGCGGCATTAAATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15084	FBgn0034402	FBtr0086619	2	1	1	67	2R	14739214	14739232	AACAGTCACCACATTTGGT		59	14739263	14739281	GATCCTGTACTTGGAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SP2637	FBgn0034371	FBtr0086657,FBtr0086658	1	2	2	100	2R	14529434	14529452	AGACTGGTGAGATCTTTCC		58	14529290	14529370	TATATCCAGAACCGACTGC		58	NA	
Drosophila melanogaster	50	CG5859	FBgn0025830	FBtr0087036	3	1	1	85	2R	12740645	12740666	CACAACATACTTAAGGATGACC		58	12740712	12740791	CTGACAGGGTTGTTAATGC		58	NA	
Drosophila melanogaster	50	unc-5	FBgn0034013	FBtr0087382	1	1	1	81	2R	11253282	11253359	TGATACATCGAACTCAACCT		58	11253403	11253421	CAGCATCTCATATGTGCTG		58	NA	
Drosophila melanogaster	50	CG8092	FBgn0033998	FBtr0087403,FBtr0087402	2	2	2	82	2R	11099263	11099281	GAGCAGACAAGAGTAACCA		58	11099141	11099159	ATACTCCAGTCCTTGAACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp6a23	FBgn0033978	FBtr0087452	3	1	1	102	2R	10764367	10764386	GATCAACAATGTTCTGAGCA		58	10764451	10764534	ATACTTGCGAAGGGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8547	FBgn0033919	FBtr0087566,FBtr0087567	2	2	2	245	2R	10149672	10149993	AGTCATTCGGAACTACCAC		58	10149386	10149404	ACTCGTACTCGTACATTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	RN-tre	FBgn0020620	FBtr0087603,FBtr0087605	3	2	3	124	2R	9877122	9877200	AGGACAGACAAATATGGCT		58	9877016	9877037	CACTGATTTAGCATCTTCATCC		59	NA	
Drosophila melanogaster	50	CG8889	FBgn0033675	FBtr0088025,FBtr0088024	1	2	3	108	2R	7914479	7914554	CAAACTAGATAATTGCACGC		57	7914390	7914408	TCTATCCGAATCGTACCTG		57	NA	
Drosophila melanogaster	50	CG34229	FBgn0085258	FBtr0112422	1	1	1	172	2R	7729259	7729360	TTGAAGCAGTTTATGCTGC		59	7729496	7729514	TGAAGGAGCATCTTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	betaTry	FBgn0010357	FBtr0088122	2	1	1	62	2R	7234351	7234369	TATGTCAACGTGAACATCG		57	7234395	7234413	GTTTCCGTAGCCATAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp47a	FBgn0033573	FBtr0088200	1	1	2	60	2R	6797436	6797455	AGTTCTAGTGCTATTGCTGG		59	6797475	6797576	CAGATTGATGTTTATCTCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pfk	FBgn0003071	FBtr0088421	2	1	3	105	2R	6000579	6000597	CACTACATCGCATCATCGA		59	6000666	6001639	GCTAAGTAACCGCAATGAC		58	NA	
Drosophila melanogaster	50	CG8027	FBgn0033392	FBtr0088609	1	1	1	87	2R	5092884	5092959	TTGCCTACAATAACCAGGG		59	5092815	5092833	TATATTTGGGTCGGACTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8172	FBgn0033362	FBtr0113058	2	1	3	272	2R	4898800	4898818	CATGATCTGGTCTTGTTGC		58	4895737	4895824	ATATTGGAGTTTGGAGTGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14743	FBgn0033326	FBtr0088722	3	1	1	80	2R	4598790	4598966	CTAGTTGAGACTATGCTGGT		58	4598729	4598747	CAGTAGTGACCATATTGCC		57	NA	
Drosophila melanogaster	50	Cyp4e1	FBgn0015034	FBtr0088746	3	1	1	85	2R	4336627	4336701	AGGACTACGTAATTGATGGTG		59	4336748	4336766	AACACGGTCATTGTATCCC		59	NA	
Drosophila melanogaster	50	CG2915	FBgn0033241	FBtr0088879	3	1	2	107	2R	3846921	3846939	GTTGGCCAGAAGTTATCCA		59	3846773	3846852	CTGAAAGTTGTAGGTCAACAC		59	NA	
Drosophila melanogaster	50	CG11125	FBgn0033174	FBtr0088974	2	1	1	133	2R	3336439	3336509	TAAGAAACGCTACGAACAG		57	3336606	3336624	AGTATATGCGGATGTCCTC		58	NA	
Drosophila melanogaster	50	Fmo-2	FBgn0033079	FBtr0086148	1	1	1	87	2R	2532057	2532076	GAACACTTCAAGCTAAAGGC		59	2531879	2532007	ATACGTAGACCTCCCAGTC		59	NA	
Drosophila melanogaster	50	CG17683	FBgn0040002	FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300	3	4	5	80	2R	19474	19549	AATCACTTCAGTTGAGGTG		57	19591	19611	CAGTCTAAATCAAGGAGATCG		57	NA	
Drosophila melanogaster	50	CG31703	FBgn0051703	FBtr0085946,FBtr0111227	3	2	2	102	2L	22103104	22103122	TCTTCAGCTATGGTCAACG		59	22103020	22103040	AATGGAGATCTTTCTCTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9264	FBgn0032911	FBtr0081463,FBtr0081462	3	2	2	80	2L	21079113	21079301	GCATTATAGATCTCAGGAGGA		58	21079343	21079361	GGAACCAACTTATGGAAGC		58	NA	
Drosophila melanogaster	50	CG10651	FBgn0032853	FBtr0081378	1	1	1	217	2L	20134272	20134340	AAATCAGCAGGAACTGTCC		59	20134073	20134091	TATTGCTTCCCTTCATGCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	Side	FBgn0032741	FBtr0081141	3	1	1	249	2L	19029112	19029319	ACGGTTAACAAATACAGAGC		58	19029531	19029549	ACTTCTTCCCGTGATTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Irk3	FBgn0032706	FBtr0114486,FBtr0081125	3	2	2	65	2L	18712026	18712045	CATCGAGTCCAAGATACGAG		59	18711710	18711728	TTTATAGTCTCACCCTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6380	FBgn0032632	FBtr0080970	1	1	1	60	2L	17291319	17291340	CTACATGAACACAAGAGTTCAC		59	17291280	17291298	ATATACGAGCAGGAGTAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15254	FBgn0028949	FBtr0080783	2	1	1	68	2L	15614614	15614632	AATGAAACCTTCAGATGGC		57	15614508	15614582	ATGCTCGGTGTCAATATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CSN1a	FBgn0028838	FBtr0080671	2	1	1	61	2L	14763399	14763417	TCCGGAATCTGATTAGGGT		59	14763442	14763460	AATGTAGGTGAGGACATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34166	FBgn0085195	FBtr0112357	1	1	1	288	2L	14743257	14743275	TAGAACGCTTTCGACAGTG		59	14743601	14743619	TTTAGTAACGTCCACCGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Adh	FBgn0000055	FBtr0100594,FBtr0100591,FBtr0100589	1	3	5	100	2L	14616350	14616368	TTTGACCAACAAGAACGTG		58	14616432	14616515	GGATCACCAGGTTCTTCAG		59	NA	Nonspecific
Drosophila melanogaster	50	nAcRalpha-34E	FBgn0028875	FBtr0080593	1	1	3	88	2L	14083488	14083506	TAGCTTCATCCGTTGTGTC		59	14083558	14089116	TTTACGTAGCCATTCGGAC		59	NA	
Drosophila melanogaster	50	kek1	FBgn0015399	FBtr0080401	3	1	1	60	2L	12820646	12820664	CCCATATCGCATTATGTGG		58	12820604	12820622	GAGCTCGACATGTAATCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ref2	FBgn0032439	FBtr0080376	3	1	1	60	2L	12611275	12611294	GTTCAAGGAGGATCGATCAG		59	12611234	12611255	ACCTTTGAATTCCTCTAAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6579	FBgn0032422	FBtr0080357	1	1	1	63	2L	12176938	12176956	ATCAGTGCAAATCCCTCAC		59	12176893	12176911	ATGTTAGAGGCAGAATCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34160	FBgn0085189	FBtr0112351	1	1	1	72	2L	10580081	10580099	TAGACGATTATTGTGCCGT		58	10580135	10580153	TAGATTTCTAGCCCTTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5385	FBgn0032215	FBtr0080062	1	1	1	60	2L	10311923	10311942	ATTGAATAGCAGATCGACGT		59	10311768	10311900	ATTTGAGGGTTCACCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13394	FBgn0032037	FBtr0079717,FBtr0079718	3	2	2	64	2L	8391199	8391291	CAAAGCGACTTACAAGGGA		59	8391153	8391172	TAGAAGGTACTCATCCACGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	cup	FBgn0000392	FBtr0079298	2	1	1	93	2L	6665778	6668346	AAACGGAGTTCCAAGATCC		59	6668402	6668421	TAGTCTTCGTCGTTGTAACC		59	NA	
Drosophila melanogaster	50	CG9547	FBgn0031824	FBtr0079263	1	1	1	60	2L	6493746	6493764	TCCTGAACGGATCTAAGAC		58	6493704	6493722	CATACGACTATGACGTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11029	FBgn0031735	FBtr0079136	1	1	1	82	2L	5746670	5746688	ATTGACATCATAGCTGCCT		58	5746734	5746752	TCGTTGATCATGTCGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsp60C	FBgn0031728	FBtr0079111	3	1	3	84	2L	5662970	5668824	GACCAACTAAAGCTCTCCA		58	5668871	5668951	CATGTTGACTGATATTTGCC		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG34124	FBgn0083960	FBtr0110838	1	1	1	80	2L	4963959	4964035	GAGAAACAGAAAGAACTCGC		59	4964075	4964096	CATTATGTTAACCTTCTCGGTG		59	NA	
Drosophila melanogaster	50	CG14044	FBgn0031650	FBtr0078990	1	1	1	80	2L	4943740	4943813	ACGGATAATAGATCCCAAGC		59	4943856	4943874	TCTAGGGATATCGTGGAGG		59	NA	
Drosophila melanogaster	50	Cf2	FBgn0000286	FBtr0089649	2	1	3	77	2L	4879196	4880311	ATTTAACGACTCACACGGG		59	4879137	4879155	TCAGATAGTCCTTCACGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3355	FBgn0031619	FBtr0077376	1	1	2	184	2L	4652029	4652047	CTAACTACGATCCCAACCG		59	4652461	4652479	CAGATAGTTGGAGGTGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31778	FBgn0051778	FBtr0077543	2	1	1	60	2L	3704938	3704957	AGCTAAGAATCACCATTGGA		58	3704897	3704915	GTGAATGGTTGTTCCAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sr-CIV	FBgn0031547	FBtr0077560	2	1	1	179	2L	3523289	3523307	TTTGGAACCTACCACTTCC		59	3523062	3523146	GTCGAACTTGTAGGGATGG		59	NA	
Drosophila melanogaster	50	CG2772	FBgn0031533	FBtr0077516	2	1	1	176	2L	3447080	3447152	CCTTAACCAGACTCTGCTC		59	3447292	3447310	GTGAGATCATATGCCGGAG		59	NA	
Drosophila melanogaster	50	CG2843	FBgn0031452	FBtr0077712	1	1	1	294	2L	2745204	2745277	TGGCGGAGATCTAAATCTG		58	2745597	2745615	GGACTTGTCGATCTTACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hrs	FBgn0031450	FBtr0089751,FBtr0089750	2	2	3	169	2L	2740459	2740523	CCAGAAAGATGTCACTCCC		59	2740656	2740674	TGAACATCTCGCAGTTCTC		59	NA	
Drosophila melanogaster	50	Or23a	FBgn0026395	FBtr0077698	3	1	1	62	2L	2654850	2654922	GCTGTATAGATTACTCGATGTG		58	2654945	2654963	ATAAACTGCACCATCATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3639	FBgn0031282	FBtr0078010	2	1	1	60	2L	816192	816213	TATTCGACTACTTTGGACTACG		59	816234	816252	TCCTGAATCCTCAAACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	al	FBgn0000061	FBtr0078053	1	1	1	76	2L	384874	384892	TTATCCCGACGTGTTTACG		59	385738	386317	GAAACCAAACCTGAATGCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	tRNA:CR32362	FBgn0052362	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-307	FBgn0067697	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Aats-lys	FBgn0027084	FBtr0071367,FBtr0071366	3	2	2	73	X	9501701	9501721	CGCTATCTTGATCTCATTCTC		58	9501587	9501666	ACGTACGAGATGATCTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32699	FBgn0052699	FBtr0110850	1	1	2	92	X	9467349	9467444	TCATCCATCTCTACAGCGA		59	9467275	9467293	TTTGTTCATTCAGCTTGCC		59	NA	
Drosophila melanogaster	50	CG3342	FBgn0029874	FBtr0070918	1	1	1	60	X	6420890	6420911	GACACTGGACAAATATCTAGAC		58	6420851	6420870	CATCTTGTGCTCCATTAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32813	FBgn0052813	FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219	3	4	6	225	X	1283913	1283931	CAACCATTCGTTCATGGAC		59	1284338	1284356	CTTGATAAGGATCACGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG41087	FBgn0069947	FBtr0113986	2	1	1	60	U	2089870	2089888	GCTGATGCTTGTCAAAGTC		59	2089828	2089849	GATCTTCTGGTAAACAAACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CaMKI	FBgn0016126	FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089063,FBtr0089065	1	7	7	106	4	473274	473293	ATGAAATTAGTGAGTCCGCA		59	473362	473438	TCCAGAAATCCAAGCATGG		59	NA	
Drosophila melanogaster	50	plexB	FBgn0025740	FBtr0089179	1	1	1	84	4	53992	56512	GCTGTTTGCTAAGGATATTCC		59	53928	53946	GTCGCTTATTTGTGGAAGC		59	NA	Nonspecific
Drosophila melanogaster	50	RpL32	FBgn0002626	FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555	2	4	5	61	3R	25871413	25871431	CGGATCGATATGCTAAGCT		59	25871308	25871326	CACTCTGTTGTCGATACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Acph-1	FBgn0000032	FBtr0085610,FBtr0085609	1	2	2	104	3R	25818488	25818562	GATTTGACCAATTTGGGCA		58	25818402	25818420	GTAGATGTTCTCGTTGGAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	alph	FBgn0086361	FBtr0085446,FBtr0085442,FBtr0085445	2	3	5	166	3R	25422971	25422990	GAGTCTAGCAAGATAACCGA		58	25423191	25423899	TAATGCGTTGGACTTTCAC		58	NA	
Drosophila melanogaster	50	Cyp6a18	FBgn0039519	FBtr0085183	2	1	1	60	3R	23305497	23305517	AAGGATCTAAAGTACCTCGAC		58	23305597	23305616	GTACAATGGTATAATGGCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0084927	3	6	7	167	3R	21532677	21532695	GACATCAGGTGCTCTACTC		59	21532198	21532547	GATGTTCCAACATATGCGTC		59	NA	
Drosophila melanogaster	50	CG11913	FBgn0039331	FBtr0084833	2	1	1	60	3R	21184836	21184855	GACTGTGGAGCTATAACTCC		59	21184877	21184896	ACTCATACAACTTCTCACGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6028	FBgn0038924	FBtr0084187,FBtr0084186	2	2	2	62	3R	17850248	17850266	ATGTGATCAATCGTCTGTC		57	17850204	17850222	TTCCGGTGACTATGATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31431	FBgn0051431	FBtr0084137	3	1	1	92	3R	17697852	17698142	TGACTATACAGAGAACACAGAG		58	17698195	17698213	ATACTCTCATCGACCAGAC		57	NA	
Drosophila melanogaster	50	CG14861	FBgn0038280	FBtr0083023	3	1	1	60	3R	10840740	10840761	GTTCAATGAATCTGATGAGGAG		58	10840780	10840800	AAAGGATGTACCAGAACTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His4r	FBgn0013981	FBtr0082962,FBtr0082963,FBtr0082964	1	3	3	69	3R	10451846	10451865	TAACATCCAGGGTATCACCA		59	10451897	10451915	AGAGATACGCTTAACACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NK7.1	FBgn0024321	FBtr0082941,FBtr0082942	3	2	2	85	3R	10167296	10169956	ACCAAGAAGGAAAGTTCTGG		59	10167230	10167248	GTTGGACTGATATCCGGTG		59	NA	
Drosophila melanogaster	50	CG31337	FBgn0051337	FBtr0082790	1	1	1	91	3R	9370330	9370348	TATGCGATGTACAAGGAGC		59	9370089	9370275	CACAAATGATAGCCTTCGC		59	NA	
Drosophila melanogaster	50	l(3)neo38	FBgn0086910	FBtr0082533,FBtr0110877,FBtr0110876	3	3	3	126	3R	7596969	7596991	GAATATCTCCATACCGTACTCAC		59	7595815	7596883	CTGGTTGAGGACTTCTTCC		59	NA	
Drosophila melanogaster	50	Syn	FBgn0004575	FBtr0089476,FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471	1	5	5	80	3R	6041341	6042793	GGTGGATGAGATATCCGAG		58	6042837	6042855	TACTCTCGTCCATCTTTGG		58	NA	
Drosophila melanogaster	50	CG10086	FBgn0037517	FBtr0081744	1	1	1	110	3R	3618430	3618607	GTACCAGATTTACCTCCTCC		58	3618680	3618698	ATAGCGTGGAGTAAATCGG		59	NA	
Drosophila melanogaster	50	CG31248	FBgn0051248	FBtr0081564	3	1	1	110	3R	2956077	2956149	AAATTCAGTATGCACCACC		57	2956222	2956241	CCACTTCGATCATAAAGTCC		58	NA	
Drosophila melanogaster	50	pb	FBgn0051481	FBtr0089277,FBtr0089276	1	2	4	135	3R	2552943	2565279	CAATCAGGGTGATAACTCCA		59	2537545	2537563	TATCTCGATCCTCCTTGGG		59	NA	
Drosophila melanogaster	50	CG1076	FBgn0037402	FBtr0078585	1	1	1	129	3R	1948786	1948805	ATATGATTCGACCCACTGTC		59	1948897	1948973	GGAGTGATGACTCGTTGAG		59	NA	
Drosophila melanogaster	50	Lcp65APsi	FBgn0020646	FBtr0076993	2	1	1	104	3L	6141448	6141466	AACCATTTCAATTGCCCTG		58	6141531	6141552	GTCTCAAACTTGTAGCTATAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arf79F	FBgn0010348	FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572	3	6	7	86	3L	22862823	22862842	ATTAGCTTTACAGTGTGGGA		58	22862563	22862777	GATAAGACCTTGTGTATTCTGG		58	NA	
Drosophila melanogaster	50	Csp	FBgn0004179	FBtr0078494	2	1	3	106	3L	22263005	22264017	GTATTCACATCTGAATCGCC		58	22264667	22264685	AGTTAACGTCGTCTAGGTC		58	NA	
Drosophila melanogaster	50	CG14183	FBgn0036931	FBtr0074907	2	1	1	80	3L	20019233	20019251	GAATGGGTTACTGAGGAGC		59	20019123	20019192	ATACTCAACCCTCATGTATTCG		59	NA	
Drosophila melanogaster	50	CG32204	FBgn0052204	FBtr0113429	3	1	1	82	3L	18923743	18923764	AATCGTACTGATATACTCGTGG		59	18923242	18923700	TTTGCACACCGTAGTAGAC		59	NA	
Drosophila melanogaster	50	CG4306	FBgn0036787	FBtr0075117	3	1	1	60	3L	18455406	18455424	GGAGGATTATGTTCAGCGA		59	18455364	18455385	CAGATAGGAGTTAACTTGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NUCB1	FBgn0052190	FBtr0075171	1	1	1	65	3L	17792152	17792170	ATTCTTCTCCATCCACGAC		59	17792105	17792123	AACAGAGCTTTGACCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5284	FBgn0036566	FBtr0075445	3	1	2	118	3L	16087340	16087463	CTTTACCGTGATAATGTTCGAG		59	16087541	16087560	CATCGTAGATACCTTGCCTG		59	NA	
Drosophila melanogaster	50	CG10738	FBgn0036368	FBtr0075804	3	1	2	158	3L	13454313	13454332	ACATTGAACAGTATGATCCG		57	13454453	13454602	ATTTGTTGACCTCATTGGC		58	NA	
Drosophila melanogaster	50	CG18331	FBgn0036181	FBtr0076140	1	1	1	60	3L	11604384	11604402	CAACCACTACATCGAAGAC		57	11604342	11604361	CTAGACCAGGAGTATTTGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6709	FBgn0036056	FBtr0076360,FBtr0113156	1	2	2	80	3L	9886558	9886630	ACATGCGATACAAGAAATGG		58	9886497	9886515	CCAGATTGTTATCGGATGC		58	NA	Nonspecific
Drosophila melanogaster	50	CG10063	FBgn0035727	FBtr0076935	2	1	1	60	3L	6964866	6964885	ATGACTTGACCTACCTAACC		58	6964825	6964843	TGAACGATATTGTGCTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9948	FBgn0035721	FBtr0076896	2	1	1	60	3L	6949964	6949982	GCAGAACGAAGGATTACAG		58	6950006	6950024	ACTGATTACTCAAGGCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1275	FBgn0035321	FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906	3	4	4	139	3L	2253685	2253787	GTATGGCAACTCCATTCTG		58	2253564	2253582	AGTTGTGGGAATCGAAGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG30275	FBgn0050275	FBtr0071874	2	1	4	124	2R	18595820	18595838	ATCCACTTTGTGGAAACCT		59	18595926	18596199	TTATCTTCGGCCCTATCCA		59	NA	
Drosophila melanogaster	50	NC2alpha	FBgn0034650	FBtr0071666,FBtr0071667	1	2	2	63	2R	17558012	17558030	GAAGATCATGCAAAGCGAC		59	17558057	17558075	TGAGATGATAACAGGCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30075	FBgn0050075	FBtr0087555	3	1	1	60	2R	10263837	10263856	TCTGCTTCAACAAGATGAGG		59	10263878	10263897	AGACGAAGTTCCTTCATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835	3	6	8	110	2R	8504608	8504626	CCTGCATATTTACCCACTG		57	8504697	8505312	GACGTCTACCATTCTAAATCTG		58	NA	
Drosophila melanogaster	50	CG30490	FBgn0050490	FBtr0088209	3	1	1	60	2R	7007166	7007185	CACAAATACTTCTAACGGCA		58	7007125	7007143	GCTACTCTCCTGATGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11778	FBgn0033371	FBtr0088563	1	1	1	280	2R	4971217	4971235	TTCTAAGCATGACCGAGAG		58	4971479	4971553	AATAGACGTATCCGTCGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG12107	FBgn0033209	FBtr0088924	1	1	1	110	2R	3562263	3562281	TATTCGGCATCTTTCTGGG		59	3562425	3562443	TTATGGCGTACAGGTAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	RpL21	FBgn0032987	FBtr0085961	3	1	1	67	2L	22247681	22247699	AACTCAAAGGGCTATCGTC		59	22247632	22247650	ATAACTCCATGCTTTCGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lok	FBgn0019686	FBtr0081329	1	1	3	244	2L	20061999	20062152	GATCAAATCGCTGGATCTC		58	20062597	20062617	CATTCTTTAGGATTCGCATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Pde11	FBgn0085370	FBtr0112544,FBtr0112545	2	2	2	80	2L	18535124	18535199	CTCCTTCCAGATTAAAGCCT		59	18535063	18535083	CACTGATCAAAGTGATGATGC		59	NA	
Drosophila melanogaster	50	RluA-1	FBgn0051719	FBtr0080040,FBtr0080039,FBtr0080041	3	3	3	80	2L	10464363	10464384	TATATCCATGTTCAAGAGCACC		59	10464242	10464324	CTATGATGAACAACGGAAGTG		59	NA	
Drosophila melanogaster	50	rost	FBgn0011705	FBtr0079782	2	1	1	82	2L	8986655	8986673	GTGTACGGAATGAGTCTGG		59	8986522	8986610	TTGCCAAATTCATCTGTTCC		59	NA	
Drosophila melanogaster	50	Spn2	FBgn0028987	FBtr0079624	2	1	1	64	2L	8240694	8240712	TCATAAGGCGTTCATCGAG		59	8240593	8240666	AAAGTAAAGCTGTTGCAGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Mnn1	FBgn0031885	FBtr0110978,FBtr0079401	3	2	3	84	2L	7059186	7060972	CACAAAGGAGGAGAAATCCA		59	7061019	7061037	ATTGAGAATCTTCTCGCCA		58	NA	
Drosophila melanogaster	50	toc	FBgn0015600	FBtr0110903,FBtr0077665,FBtr0077663,FBtr0077662,FBtr0077664	3	5	6	100	2L	3071761	3080665	TTCATGTCCAAAGAGCTGG		59	3071679	3071699	TGCTGTAGCAGCAATATAGTC		59	NA	
Drosophila melanogaster	50	CG33673	FBgn0053673	FBtr0091652	1	1	1	93	2L	1946255	1946273	TCGATATCAACCGAAACTG		57	1946122	1946140	ATCACAAGGAGCAAATCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG18131	FBgn0031343	FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934	3	4	6	63	2L	1500146	1500167	GCCAGCTTATATCTAATGACCT		59	1500036	1500123	GATATGTTGACTTGAGTGGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	GluRIIC	FBgn0046113	FBtr0078026,FBtr0078027	3	2	2	140	2L	917374	917471	CTTTGGAAGAAAGGCTCAC		58	917575	917593	TATCCAATGATCTTCGCGG		59	NA	
Drosophila melanogaster	50	Nle	FBgn0021874	FBtr0078075	3	1	1	61	2L	567612	567632	TTGTGGGATCTTAACACAGAG		59	567571	567589	AGAACCCACTGCTTATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8010	FBgn0031008	FBtr0074688	2	1	1	144	X	19161474	19161492	GATACAACGACTTCGAGGA		58	19161282	19161366	TGCCTGTAATACTTCTCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9172	FBgn0030718	FBtr0074151,FBtr0074152	1	2	2	82	X	15880262	15880280	AAGGTCTACGACCAAATGC		59	15880198	15880216	GAGTAATGGTAGTAGCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	REG	FBgn0029133	FBtr0073730	2	1	1	135	X	13106868	13106886	GTGGATGTCATCGTCTCTG		59	13106982	13107200	TAAGTAGATTGGAATCCTCCAC		59	NA	
Drosophila melanogaster	50	CG32682	FBgn0052682	FBtr0071480	1	1	1	60	X	10201913	10201931	AAACAGGTATACACTGGGC		59	10201871	10201889	TTTCTAATTCAAGTGCCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12661	FBgn0030071	FBtr0071265	2	1	1	60	X	8817389	8817407	AGAATCGCCTAGAGAAGTG		58	8817347	8817366	TCCAAGCTATAATCGGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14441	FBgn0029895	FBtr0070959	2	1	1	103	X	6607701	6607783	AATAATCGCAAACTTGGGC		59	6607849	6607868	GCCTCTCGCAATATTAACTG		58	NA	
Drosophila melanogaster	50	CG14265	FBgn0040393	FBtr0070541	2	1	1	226	X	3130645	3130663	TAGCAGTCGTACTGATCTG		58	3130437	3130455	CTTCTTGGATGAACTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sta	FBgn0003517	FBtr0070289,FBtr0070291,FBtr0070290	2	3	3	225	X	1376899	1376919	GGGAGGCTTAGATATTCTGTC		59	1376502	1376712	GATGACGAAGATGTCCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ase	FBgn0000137	FBtr0070075	1	1	1	60	X	355896	355917	GGTTGCAATACATCAGAATACC		59	355938	355956	AATAAGTCAGTCGTCAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15510	FBgn0039707	FBtr0085487	1	1	1	152	3R	25662547	25662621	AGAGCAAGAAACCATCGAC		59	25662737	25662755	ATCTGGACGATCTCCTCTC		59	NA	
Drosophila melanogaster	50	CG33977	FBgn0053977	FBtr0100020	2	1	1	63	3R	9228654	9228673	TCTTTGCGATTCCCTATCTC		59	9228610	9228628	TACTTGGTAGTTAGTGGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8021	FBgn0037602	FBtr0081878	3	1	1	90	3R	4476920	4476939	ACCTACTTCTCAAAGTACGG		58	4476992	4477010	AAACCACAAAGCCATAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17233	FBgn0036958	FBtr0074852,FBtr0074851,FBtr0074850	1	3	3	60	3L	20227274	20227366	AAGGATATTGTTCTATGCCG		57	20227233	20227251	GTGCAATCTTGTGGAAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Elo68beta	FBgn0036128	FBtr0113161	1	1	2	121	3L	11094311	11094385	ACATGAAATCCGGATAGCG		59	11094208	11094226	ACACATGTAGGAAGCTCAG		58	NA	
Drosophila melanogaster	50	dally	FBgn0011577	FBtr0076583	3	1	1	125	3L	8879486	8879603	CCGAAATCATGAACCATCTG		58	8879691	8879709	ACTGAACAAAGAAGTGCCT		59	NA	
Drosophila melanogaster	50	CG15829	FBgn0035743	FBtr0076913	1	1	1	71	3L	7122060	7122152	CTTTGAGGAGATCGTCGAG		59	7122187	7122205	TAGAACTCGAGGAACTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11586	FBgn0035520	FBtr0073243	2	1	1	62	3L	4262084	4262102	AATCCGGTGGCTATTACTG		59	4262040	4262059	CCAGAAAGTTGATGGAATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14989	FBgn0035495	FBtr0073207	3	1	1	234	3L	4089191	4089209	TTTGCTGTGTAAAGAGCTC		57	4090361	4090379	CTTCATCACCCTCATCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30429	FBgn0050429	FBtr0072450	2	1	1	147	2R	21134524	21134600	TTTACGCTAATGGAAACCG		58	21134711	21134729	GGTTCATCCTGTACCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9294	FBgn0034666	FBtr0071720	2	1	1	68	2R	17749019	17749037	GAACTGGGTATAGTTGCTG		57	17749069	17749142	TTCCCTTAAGGTATCGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7997	FBgn0034117	FBtr0087172,FBtr0087171	1	2	2	80	2R	12229398	12229418	CAGCTCCTCTAATTATGTCCA		58	12229277	12229356	CAATAACCGCACGATTCTG		59	NA	
Drosophila melanogaster	50	CG8768	FBgn0033769	FBtr0087871	2	1	1	152	2R	8579233	8579307	AGTTTAGCAAAGCCTTTGC		59	8579099	8579118	TAAATCCGGATGATAGAGCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG30502	FBgn0050502	FBtr0089001	2	1	1	127	2R	3334678	3336934	GATAGTATGGAGCACCTAGTG		59	3334571	3334589	TACCAAGGGTCAAAGAGAC		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111092,FBtr0111064,FBtr0111093,FBtr0111070,FBtr0111098,FBtr0111087,FBtr0111063,FBtr0089016,FBtr0111072,FBtr0111084,FBtr0111066,FBtr0111053,FBtr0111090,FBtr0111086,FBtr0111058,FBtr0111050,FBtr0111061,FBtr0089020,FBtr0111082,FBtr0111079,FBtr0089017,FBt	2	60	60	83	2R	3208258	3209096	GATAGAAAGAAACGAAACCGG		59	3208195	3208213	GCCATAGTATCGTAGGCTG		59	NA	
Drosophila melanogaster	50	CG2225	FBgn0032957	FBtr0100618,FBtr0085918,FBtr0085914,FBtr0085915,FBtr0085917	3	5	5	122	2L	21669233	21669379	TACAACGGTAACGATCAGC		59	21669129	21669147	TATTTGCATCAGTGGAGCA		59	NA	
Drosophila melanogaster	50	CG31680	FBgn0051680	FBtr0081383	1	1	1	61	2L	20640192	20640284	GTTCTAAGTGAATCCTTAGCAG		58	20640303	20640324	GAAATATTATGAAGCCTCCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15145	FBgn0032649	FBtr0080991	2	1	1	104	2L	17531715	17531734	AAGGATGAAACCACTCAGAC		59	17531558	17531576	GAACAGTTCTAGGGTACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ACXE	FBgn0040506	FBtr0080416	3	1	1	92	2L	12928710	12928791	TCATATCGTGGATGTGTATCTC		59	12928843	12928862	ATTAGCATGGCAAACATGAC		59	NA	
Drosophila melanogaster	50	CG12307	FBgn0032370	FBtr0080266	3	1	1	69	2L	11651627	11651645	CAGAGCTCTGTGAGTTGTC		59	11651576	11651595	TCATCGCGAGATTGTTAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34366	FBgn0085395	FBtr0112591	1	1	1	119	2L	9380713	9380828	TCATCAGGCTGATTGTCTC		59	9380612	9380630	TATATTCACCCATGCGCTG		59	NA	
Drosophila melanogaster	50	tRNA:G3:57BCb	FBgn0011872	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	su(f)	FBgn0003559	FBtr0113736	3	1	5	80	XHet	77304	77323	AGGACTATATCGCATTCGAG		58	77366	77612	TAGGGCCGTATTTAGATCG		58	NA	InUTR
Drosophila melanogaster	50	CG14619	FBgn0031187	FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350	1	5	5	122	X	21868684	21868703	TTATGAACTCGGTCATCCAG		59	21868788	21868866	GTTTGGCAAATTCGTGGAG		59	NA	
Drosophila melanogaster	50	tty	FBgn0015558	FBtr0077225,FBtr0077224	1	2	2	98	X	21207802	21207820	CGATGAGATCTACCTGGAG		58	21207428	21207447	CGGGTCATGAGATAGAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089403,FBtr0089404	2	2	13	73	X	20105893	20105912	AAAGAGACACTGGTCTACAC		58	20103229	20105857	TTGTATTCATCATCGCCGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	RhoGAP18B	FBgn0030986	FBtr0074699	3	1	1	86	X	19038525	19038610	AATGTGTTTCGCATCAACC		59	19038457	19038475	CTCGTCCAGGTACAAACTG		59	NA	
Drosophila melanogaster	50	Pk17E	FBgn0004462	FBtr0074634	2	1	1	81	X	18685101	18685185	CAACCTCCATATTCTATCGGA		58	18685228	18685246	ACGAACCAGATCAATGGAG		59	NA	
Drosophila melanogaster	50	CG15046	FBgn0030927	FBtr0074628	1	1	1	203	X	18382307	18382326	ACTATCTGGCGGATATAGTG		58	18382010	18382085	GACAGTCAGTGTCTTCACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	wupA	FBgn0004028	FBtr0074520	3	1	7	89	X	18006657	18006675	AAGCAACACTATGACAGGA		58	18000956	18006605	ATCGTTGATCTCAACATCCT		58	NA	
Drosophila melanogaster	50	CG5445	FBgn0030838	FBtr0074425,FBtr0074427,FBtr0074426	1	3	4	85	X	17197412	17198114	GATGAGTAACTGGAGCCTG		59	17198163	17198181	GGACGATCTTCATCGAAGG		59	NA	Nonspecific
Drosophila melanogaster	50	f	FBgn0000630	FBtr0074424,FBtr0074421,FBtr0074423,FBtr0074420,FBtr0074422	2	5	6	106	X	17173603	17173621	AGAAGATGAAAGTGGAGCA		58	17173691	17173774	CAAGTAGATCTGGTCCACG		59	NA	
Drosophila melanogaster	50	mei-218	FBgn0002709	FBtr0100640,FBtr0100639	3	2	2	89	X	17033337	17033420	TCTAGATTGAGCCAAAGACG		59	17033267	17033285	AGGATTTGGTAGTTGCTCG		59	NA	Nonspecific
Drosophila melanogaster	50	mei-218	FBgn0002709	FBtr0100640,FBtr0100639	2	2	2	88	X	17033337	17033419	CTAGATTGAGCCAAAGACG		57	17033267	17033285	AGGATTTGGTAGTTGCTCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	spheroide	FBgn0030774	FBtr0074363	1	1	1	69	X	16595393	16595411	AGTACCAACCAGTATGCTG		58	16595342	16595360	TATAGTAGTCCGGATGCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	r	FBgn0003189	FBtr0089734,FBtr0089733	3	2	2	93	X	16554422	16554440	TATGAGGCGTATCTCAAGG		58	16554496	16554580	CCATCTTGTGCTTGAAACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9992	FBgn0030744	FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309	1	5	5	93	X	16277004	16277022	AGTCCTACTTCCGAGACTG		59	16276867	16276947	CAAAGTTGTGCAAGTCCTG		59	NA	
Drosophila melanogaster	50	vap	FBgn0003969	FBtr0074141,FBtr0074143,FBtr0074142,FBtr0074140	3	4	4	110	X	15897469	15897569	CTATTTAGTTCGCGAAAGTGAC		59	15897299	15897318	ATATAGAAGTCTCCGCACAC		58	NA	
Drosophila melanogaster	50	CG16952	FBgn0030701	FBtr0074115,FBtr0074114,FBtr0074116	1	3	3	110	X	15769231	15769312	ATATACAGCATCAACTGCCA		59	15769385	15769403	GTTGTGGATGTGATGTTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG6299	FBgn0030641	FBtr0074033,FBtr0074032	2	2	2	139	X	15360379	15360398	TCATATGCACCTTCTTCGAG		59	15360497	15360584	GTAGATGATCTTGATTGTGCTC		58	NA	
Drosophila melanogaster	50	rdgB	FBgn0003218	FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194	3	4	4	84	X	13663020	13663039	CTATTATCCGGACAATGGCT		59	13663083	13663187	GTCAATTACGTCTACGATACGA		59	NA	
Drosophila melanogaster	50	CG32631	FBgn0052631	FBtr0073799	2	1	1	88	X	13451538	13451556	TCAACGAGAAGGAGTACAC		58	13451608	13451626	TTAGAACTGACCACTCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4645	FBgn0030435	FBtr0073692	2	1	1	142	X	12805134	12805450	TCTCTGGGTGATCAATATCTC		58	12805554	12805572	TCAGGATTCCAACGATGAG		59	NA	
Drosophila melanogaster	50	CG34323	FBgn0085352	FBtr0112525	2	1	1	60	X	11964609	11964628	CCTGGGTATTGAAGTACGAC		59	11964648	11964669	CCCTGATTAACGTGAATAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hmr	FBgn0001206	FBtr0071511	2	1	1	125	X	10486441	10486459	CTCTACTGCGATTTACGCA		59	10486275	10486353	CCGATGATTGAGATTTGGGA		59	NA	
Drosophila melanogaster	50	CG2990	FBgn0030170	FBtr0112971,FBtr0071415	2	2	2	103	X	9906163	9906182	GATATTAGAAGAGGGACGCT		58	9906307	9906325	CAACATATTCGCCCAAGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	btd	FBgn0000233	FBtr0071379	1	1	1	73	X	9590947	9590965	ACATGAAGTCCGAGTATGC		59	9591002	9591020	ATGCGGATAACCGTAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3099	FBgn0030145	FBtr0071365	2	1	1	61	X	9514512	9514532	TTCTATCGCAAACTAGAGTCC		59	9514554	9514634	ATGTGCAGTTTAAGCTTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	ric8a	FBgn0028292	FBtr0071317	1	1	1	61	X	9150342	9150360	CACCTGAAACGACTAGAGG		59	9150385	9150403	TTGAATTCGTCCAGGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17754	FBgn0030114	FBtr0071314,FBtr0071316,FBtr0071315	1	3	3	215	X	9148059	9148150	ATACCTGGACTCTGATCTG		57	9148329	9148347	GTATGACATTCGGAATCGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG12118	FBgn0030101	FBtr0071340,FBtr0071339	1	2	2	124	X	9089594	9089612	AAGGAGACATCGAAATGGG		59	9089159	9089177	TAGAAAGAATGGACGTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274	1	10	10	163	X	8768353	8768371	GATGAGAACGAGAACGAGG		59	8768131	8768227	TCTTGTTTCAGAGCCTTGAG		59	NA	
Drosophila melanogaster	50	CG12075	FBgn0030065	FBtr0071253,FBtr0071254	2	2	2	63	X	8763928	8764014	CAACAGTTCCAGTGATGAC		58	8764041	8764059	CTTCAGAGCAATAACCGAG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG2004	FBgn0030060	FBtr0071281	1	1	1	203	X	8607808	8607826	GATATTCTTCCGCAACGAG		58	8607430	8607641	TAGTCTTGACGTACAGGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1440	FBgn0030038	FBtr0071197,FBtr0112961,FBtr0112962	1	3	3	91	X	8334503	8334584	GTATCCGTGGATAAGAGCG		59	8334639	8334657	TTCATCACCAGATAGCCCT		59	NA	
Drosophila melanogaster	50	CG1636	FBgn0030030	FBtr0071171	3	1	1	133	X	8168645	8168746	CATCGATGTTTACAGGTACG		58	8168842	8168860	AAACCTGGTAGATGATCCG		58	NA	
Drosophila melanogaster	50	CG10761	FBgn0030015	FBtr0071187	2	1	1	63	X	8055821	8055839	TTATTGAGCATCCTCCTGG		58	8055776	8055794	GGAAGATACTGGCCAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Upf2	FBgn0029992	FBtr0071117	1	1	1	60	X	7966164	7966183	AATAAGCGAGATAGACGAGG		58	7966059	7966077	TCGCTGATCATTCGATGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11386	FBgn0029973	FBtr0071139	1	1	1	60	X	7791673	7791691	GTAAATACACCGTGGAAGC		58	7791631	7791650	GGATTCTTCTTGAGAACGAC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab39	FBgn0029959	FBtr0071072	1	1	1	65	X	7630237	7630255	ATATAAGGCGGAGGATGGA		59	7630284	7630302	AAGTCCAGACTATTGGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14436	FBgn0029902	FBtr0070977	2	1	1	152	X	6694188	6694206	GATGATGCGATGGATTTGG		59	6693832	6693850	GTAAAGCCAGATAACGTGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14439	FBgn0029898	FBtr0070960	1	1	1	119	X	6649035	6649053	TGTGATGAACAACATTGGC		58	6649136	6649214	AGAATAGAACTGATGCCGT		58	NA	
Drosophila melanogaster	50	CG17717	FBgn0029877	FBtr0070944,FBtr0070943	2	2	2	87	X	6484216	6484234	CTGATTGTGAAGCATCTGC		59	6484350	6484368	TATTATCCATGCACTGCAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Rpt4	FBgn0028685	FBtr0070929	3	1	1	93	X	6184932	6184951	GTCGGAGAACGATCTAAAGG		59	6184795	6184879	GGCCTTCACAATGAATTTATCC		59	NA	
Drosophila melanogaster	50	Tsp5D	FBgn0029837	FBtr0114466,FBtr0070888	3	2	2	148	X	5964737	5964899	CCTGGTATTGTACTTTATGCTG		58	5964610	5964629	GATCGCTGCTGTTATAATGC		59	NA	
Drosophila melanogaster	50	Act5C	FBgn0000042	FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822	2	4	4	112	X	5797605	5797623	AGGATCTGTATGCCAACAC		59	5797699	5797717	CTTGATCTTCATGGTCGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ctp	FBgn0011760	FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704	3	4	4	185	X	4585719	4585738	CAGTGAAGTTGTAAGCACAC		59	4592338	4592356	CTCCTTCTTGATGTAGGCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12688	FBgn0029707	FBtr0070653	3	1	1	74	X	4275981	4275999	AGGAGACCAAGAAGATCCA		59	4277107	4277125	TCGGAGTGTCCTCTAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3626	FBgn0029706	FBtr0070652	2	1	1	83	X	4263412	4263498	ACCTATAAGGAATTGGATGTGG		59	4263541	4263560	TAGGACATAGCCCAATTCAC		59	NA	
Drosophila melanogaster	50	CG9904	FBgn0040336	FBtr0070442	1	1	1	60	X	2515304	2515323	GGTACATCATGTTCAACTGG		58	2515412	2515430	AACAGATTGGTGCTAATGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	egh	FBgn0001404	FBtr0070440,FBtr0070439	2	2	2	128	X	2491030	2491048	CAGTTATGTGGTCACCCAG		59	2491451	2491469	ATGAAGTTGAACGTGTAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14045	FBgn0040387	FBtr0070463	3	1	1	99	X	2278343	2278361	TCAGCGATTCAACTTCCAG		59	2277627	2278281	GGGAACTGAGTTTAAATGGC		59	NA	
Drosophila melanogaster	50	csw	FBgn0000382	FBtr0070378,FBtr0070379,FBtr0070380	2	3	3	112	X	2005069	2005087	AAGTTCGTCTACTATGCGG		59	2005161	2005246	CCCGTGTACTTTATATTGGTG		58	NA	
Drosophila melanogaster	50	CG14814	FBgn0023515	FBtr0070369,FBtr0070370	2	2	2	95	X	1756984	1757068	CAAGCGCAAACTTAACCAG		59	1756907	1756925	AGTTCGTGTATCAAGGTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	pck	FBgn0013720	FBtr0070256,FBtr0070255,FBtr0100198	1	3	3	103	X	1365543	1365561	CTCTCGCTTACCATCATCC		59	1365628	1365700	ATGAACAGAGACGAGATGG		58	NA	InUTR
Drosophila melanogaster	50	CG14627	FBgn0040361	FBtr0070199	2	1	1	67	X	1076442	1076460	AGATGGAGACCAACTTCAC		58	1076491	1076509	AGTAGACGGTAAACTGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sdk	FBgn0021764	FBtr0070132,FBtr0070131,FBtr0070133,FBtr0070130	3	4	4	90	X	631306	631548	ACCTGGATATACAATGAGACAC		59	631599	631617	ATCGGATGTTCGAGATGAG		58	NA	InUTR
Drosophila melanogaster	50	RpL36	FBgn0002579	FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156	1	4	4	114	X	522710	522792	TTGAAGAACATCCAAACCC		57	522614	522632	TATCCTTGGACACCTTCAG		58	NA	
Drosophila melanogaster	50	CG13366	FBgn0025633	FBtr0070161,FBtr0110791	1	2	2	98	X	508046	508613	AGATGCAGAGTCTACAGGA		59	507966	507984	GTGAGTTTACTACGTCCCG		59	NA	
Drosophila melanogaster	50	ac	FBgn0000022	FBtr0070072	1	1	1	60	X	264647	264666	AAGACTACCGTAACAATTCC		57	264688	264707	ATATAGTCGAGGATGTCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR41571	FBgn0085804	FBtr0114258	2	1	1	60	U	5607594	5607615	GATCGATTCATTGGAGTTAGAG		58	5607555	5607573	AACTCACCTGAAAGACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR41548	FBgn0085802	FBtr0114256	1	1	1	60	U	9796437	9796458	GATCGCAAGATCGTTATATTGG		59	9796478	9796497	GTACAAGACCATACGATCTG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41423	FBgn0085644	FBtr0114088	2	1	1	89	U	2928080	2928100	CCATGAAGGACTTTATGTGTC		58	2928535	2928554	GGATACTTTGCCTTGTACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41521	FBgn0085666	FBtr0114113	3	1	1	64	U	2919167	2919185	ACAACCAAGGTTCATTTGG		58	2919212	2919231	AGAATTGGACATTATAGCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mitf	FBgn0067895	FBtr0100347,FBtr0100348	1	2	2	80	4	1224345	1224363	AAGCTCGTTACAGTCTACC		58	1224406	1224998	AATGATGGTAGCTCAGAGAC		58	NA	
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0089226,FBtr0089223	2	2	5	81	4	1040636	1042882	CCATGTGTTCTAACGAAACTG		59	1040575	1040593	GGGTTTCTCCTCCTAAAGG		58	NA	
Drosophila melanogaster	50	eIF4G	FBgn0023213	FBtr0089243,FBtr0112904	1	2	2	84	4	941816	945718	CCTATCACTGATGAAACGGA		59	941751	941769	GATGGGTCTGATTAGGTGG		59	NA	
Drosophila melanogaster	50	CG9935	FBgn0039916	FBtr0089102,FBtr0110907,FBtr0110906	2	3	3	81	4	663046	663127	CATTCTTGAGTCAGAGCCA		59	662983	663001	GTGTGATTGTTCCAGTGTC		58	NA	
Drosophila melanogaster	50	CG1815	FBgn0039863	FBtr0085822,FBtr0085823,FBtr0085824	1	3	3	80	3R	27501824	27501843	GGTTCACAAATCTATCCCTC		57	27501884	27502037	GAAGTAGTCGGTTATCTTGTG		58	NA	
Drosophila melanogaster	50	CycG	FBgn0039858	FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799	2	5	5	91	3R	27426460	27426478	ACATCAAGGAGTCGTACAC		59	27426317	27426407	ATCAGGAATCCTCATGTACTG		58	NA	
Drosophila melanogaster	50	CG11333	FBgn0039850	FBtr0085789	3	1	1	132	3R	27289386	27289404	GTTCTCTATGCTGGTGGAG		59	27289561	27289580	ATCATTTACCAGGTCGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1750	FBgn0039836	FBtr0085767,FBtr0085768	3	2	2	127	3R	27079897	27079915	GATCTGCATGCATCTTTGG		59	27079733	27079807	GTAATCTTGGGAGCATAGCT		59	NA	
Drosophila melanogaster	50	chp	FBgn0000313	FBtr0085778	3	1	1	81	3R	27032427	27032500	AATTCGCTGATGAACACGA		59	27032364	27032382	GGATCCAGTTGTAGCTGAG		59	NA	
Drosophila melanogaster	50	Tpi	FBgn0086355	FBtr0085582,FBtr0085584,FBtr0085583	3	3	3	108	3R	25959111	25959129	CAACATCTCCAAGGAGGTG		59	25959021	25959039	CAGGAAGCCATCTATGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7816	FBgn0039714	FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921	3	6	6	81	3R	25690544	25690624	GGGCGATAATCAAGATCCT		58	25690481	25690500	GATCGTGAAGATCAGTATGC		58	NA	
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	1	7	8	81	3R	24639657	24639675	TACTGCTACGGATATTGGC		58	24639719	24640879	GCTCAAACACCTTATAGCAG		58	NA	
Drosophila melanogaster	50	Hrb98DE	FBgn0001215	FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301	2	4	6	95	3R	24429336	24429354	GCAATCAAGGCAACTATGG		59	24429413	24429793	TACTTTATCACCTCGTCCG		58	NA	InUTR
Drosophila melanogaster	50	Moca-cyp	FBgn0039581	FBtr0085286,FBtr0085287	1	2	2	110	3R	24168519	24168608	CGAGATACCAGAGGTATCGA		59	24168681	24168699	TGATCTTTGCCTCGATCAC		59	NA	InUTR
Drosophila melanogaster	50	CG34437	FBgn0085466	FBtr0112738	3	1	1	70	3R	24109731	24109749	ATAACAACTGCTAGTTGCG		58	24109842	24109862	GGTATATTGTCAAACCTTCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6330	FBgn0039464	FBtr0085085	2	1	2	147	3R	22777615	22778738	AAAGGATAACGCGGTACTC		59	22777131	22777505	ATGCAAACGAACTTAACGTC		59	NA	
Drosophila melanogaster	50	CG6460	FBgn0039439	FBtr0085053	1	1	1	141	3R	22453954	22453972	CTGATATCGGTGATCTGGC		59	22453831	22453849	AACTGATCGTACTGACCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8932	FBgn0039390	FBtr0084944	1	1	1	108	3R	21736612	21736630	ATCGTCATCTATGTGCCAG		59	21737020	21737038	AATTCCGCTGAATAACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31380	FBgn0051380	FBtr0084918	1	1	1	60	3R	21615039	21615060	AACTATGGTGCTATCCTAACAC		59	21615000	21615018	GATGTTCCTCGACTATGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	niki	FBgn0045980	FBtr0084737	1	1	1	94	3R	20649804	20649878	AACAAAGGGTACTCCTATGAG		58	20649730	20649748	ATGGACACATTGCTGTAGG		59	NA	
Drosophila melanogaster	50	nAcRalpha-96Ab	FBgn0000039	FBtr0084640,FBtr0084639	1	2	2	86	3R	20313318	20314186	GTGATCAGATCGATTTGAAGC		59	20314234	20314252	GATAGTACTCACGCAGGTC		59	NA	
Drosophila melanogaster	50	HDC15381	FBgn0086610	FBtr0113461	2	1	1	156	3R	20203015	20203033	TGTACGATGTTGTGGAGAC		59	20203209	20203300	TTATCCAGGGATGGAACCA		59	NA	
Drosophila melanogaster	50	jar	FBgn0011225	FBtr0100171,FBtr0100172,FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173	3	6	6	83	3R	20083624	20083702	ATATTGGATGCCAATCCCG		59	20083559	20083577	GAACTTTCCAAATCGCGAG		59	NA	
Drosophila melanogaster	50	Mpk2	FBgn0015765	FBtr0084580	2	1	2	90	3R	19977630	19977648	GGAATGGAGTAATAGCGCA		59	19977458	19977576	TTAATGGTGCCTCTGTTCC		59	NA	InUTR
Drosophila melanogaster	50	CG10365	FBgn0039109	FBtr0084447,FBtr0084448,FBtr0084446,FBtr0084449	1	4	4	107	3R	19554819	19554837	ATTCGAGGATATGTTCGCC		59	19555685	19556379	AGTGATTCCCTCTTTGTCC		58	NA	
Drosophila melanogaster	50	orb	FBgn0004882	FBtr0100228,FBtr0084386,FBtr0084385,FBtr0084384,FBtr0100227	3	5	5	80	3R	19092487	19092506	TGATTCTCACTGTGGTAGGA		59	19092371	19092446	CAAGGAATGACTTCAACATCC		59	NA	
Drosophila melanogaster	50	CG5391	FBgn0038943	FBtr0084242	3	1	1	72	3R	18159011	18159029	TCAAGCTAAAGAAGGGCAG		59	18158957	18158975	AAATCGTAGTCGAACTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ND42	FBgn0019957	FBtr0084172	1	1	2	136	3R	17854857	17854942	ATGTCTGGTTCAATGCTCC		59	17855042	17855060	TCAACTCGAAAGCATAGCA		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG31465	FBgn0051465	FBtr0084147	1	1	1	92	3R	17708830	17708848	AATCAATCGTCGGAAGAGG		59	17708961	17708979	CCAGGATCCGTTTAGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fancd2	FBgn0038827	FBtr0083995	1	1	1	81	3R	16640970	16640988	GGACATCATAGCCAATGCT		59	16640802	16640928	GGAATAGTTGATGTTAAGCAGC		59	NA	
Drosophila melanogaster	50	CG15923	FBgn0038814	FBtr0113254	1	1	1	80	3R	16438766	16439051	TATCGACCATGCTATCAAGG		59	16438705	16438723	TCTATTTCGCAGTTCAGCA		59	NA	
Drosophila melanogaster	50	CG4335	FBgn0038795	FBtr0083894	3	1	1	60	3R	16233397	16233418	ATCTACCAGCTGATATAATGCC		59	16233358	16233377	TGCACTTGTAGATTCATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr92a	FBgn0045471	FBtr0083865	3	1	1	60	3R	15947020	15947039	TCCTACAAGTTCTTCATGGT		58	15947062	15947080	AAGATAACTGCAACGTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GluClalpha	FBgn0024963	FBtr0083787	1	1	4	161	3R	15591450	15591468	GATAGCAATGCAACGTTCG		59	15592362	15593260	TCTAGAACATTGTCTTGTGGG		59	NA	
Drosophila melanogaster	50	CG31219	FBgn0051219	FBtr0113400	2	1	2	104	3R	15477463	15477481	AAGATCATAGTGCATGGGC		59	15477549	15477679	GATTCCTGTCCTATAGCGC		59	NA	
Drosophila melanogaster	50	CG3734	FBgn0038700	FBtr0083755	3	1	1	81	3R	15215343	15215425	ACTATTATTCCAGAGCATGCC		59	15215466	15215486	CTTTGGAAGCTCTCATTTCAG		59	NA	
Drosophila melanogaster	50	CG7714	FBgn0038645	FBtr0083686	1	1	1	60	3R	14551903	14551921	CCGTTCCTCAATATACGGA		58	14551861	14551879	AACTTGAATCCTGACTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7675	FBgn0038610	FBtr0083582,FBtr0083583,FBtr0083581	3	3	3	130	3R	14205050	14205068	ACAGTCATTATCACAGGCG		59	14204680	14204956	ACGATCTCATCCTTCACTG		58	NA	
Drosophila melanogaster	50	CG14316	FBgn0038567	FBtr0083546	3	1	1	60	3R	13978775	13978794	TTGAGGATCATATCAAGTGC		57	13978816	13978835	TCCGTCAGATTTATACAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7794	FBgn0038565	FBtr0083540	1	1	1	95	3R	13850106	13850189	ATCCTTCGCCTTCAATCTC		59	13850247	13850266	CAATAAACGATACATCGGCG		59	NA	
Drosophila melanogaster	50	osa	FBgn0003013	FBtr0089581,FBtr0089582,FBtr0089583	3	3	3	111	3R	13533853	13533871	ACATCTCAATATTCGCCGT		59	13533696	13533778	GATTCGGTTCGGGATACTG		59	NA	
Drosophila melanogaster	50	CG14893	FBgn0038451	FBtr0083331	3	1	1	113	3R	12447303	12447321	ACTTTCCCAACACCTACAC		59	12447398	12447475	CATGGGTCGCAATTATGAC		58	NA	
Drosophila melanogaster	50	glob1	FBgn0027657	FBtr0083247,FBtr0083246,FBtr0083248,FBtr0083245	1	4	4	109	3R	11723133	11723277	CTTACAACCAACTGAAAGGAG		58	11723044	11723062	GATTCCGTAGACATGGTCC		59	NA	
Drosophila melanogaster	50	rec	FBgn0003227	FBtr0083193	2	1	1	60	3R	11657250	11657270	GACATGATCTAGTTGATGCTG		58	11657210	11657228	TTAAGGATGCCAGTTACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18519	FBgn0038348	FBtr0083153	1	1	2	89	3R	11366293	11366380	TCTTATAAGATCTTGCCCAGAG		59	11366225	11366243	AATCCTGTGCTGAATGTCC		59	NA	
Drosophila melanogaster	50	CG18522	FBgn0038347	FBtr0083154	2	1	1	81	3R	11361060	11361079	GGAGGGAAAGATTATCCGTG		59	11360776	11361018	GGGCATAATCTTGTAGGAGTC		59	NA	
Drosophila melanogaster	50	CG6130	FBgn0038334	FBtr0083107	1	1	1	60	3R	11208307	11208325	CATTGAGCTGATCATGGAG		57	11208265	11208284	GGTATCGATTAACATGTCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34316	FBgn0085345	FBtr0112514,FBtr0112515	3	2	2	83	3R	11056745	11056763	CAAATCCTTATACACCGCC		58	11056810	11056894	TTTGTAATGGAGGTTTCGG		57	NA	Nonspecific
Drosophila melanogaster	50	CG6974	FBgn0038285	FBtr0083042	3	1	1	60	3R	10904602	10904620	CACGAAGTTGTCCTTAACG		58	10904560	10904580	GGGTTTCGTGTTGAATTACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14852	FBgn0038242	FBtr0082957	2	1	1	176	3R	10391987	10392006	CTAGTCCTTCAACAGGATCG		59	10392145	10392163	TATTCCTGTTATTGCGACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082802,FBtr0082801,FBtr0082806	1	3	8	95	3R	9488692	9488710	ATCATCCTCTCGTTATGGC		58	9488769	9491188	TAATCCTTGAGATCCTGCC		58	NA	
Drosophila melanogaster	50	CG33929	FBgn0053929	FBtr0091933	3	1	1	136	3R	8720054	8720072	TTCCTCATTCGAATACTGC		57	8719864	8719955	CAACTGGATATCCTTTCCAG		57	NA	
Drosophila melanogaster	50	Octbeta3R	FBgn0053959	FBtr0099996	2	1	5	137	3R	8344783	8344895	ATCTTTAAGGAGGCGATTCG		59	8344665	8344684	ATTCAGATCACAGTCACTGG		59	NA	
Drosophila melanogaster	50	GstD6	FBgn0010042	FBtr0082573	1	1	1	60	3R	8203071	8203090	TTCGTTATTTGGGAAACTCG		58	8203113	8203131	CATCCTTACCGTACTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3809	FBgn0037995	FBtr0082545	2	1	1	60	3R	8023906	8023926	CTTTCGAACTTCCTTTAGGAG		58	8023948	8023966	TGGTAGATCCATTCTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082455,FBtr0082454	1	2	6	133	3R	7419485	7429878	CAAAGCAAAGAAGAGGGTG		58	7419370	7419388	CATTATCTTTCTCGGCAGC		58	NA	Nonspecific
Drosophila melanogaster	50	RpS25	FBgn0086472	FBtr0082369,FBtr0082370	2	2	2	126	3R	7041512	7041530	GAAGCTGTACAAGGAAGTG		58	7041336	7041422	CTTGATCAGACCCTTCTCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG4509	FBgn0037840	FBtr0089880	3	1	1	116	3R	6671487	6671574	GTTCGCATCAAGCATAACC		59	6671654	6671672	GCGGTTCTCAATTACATCC		58	NA	
Drosophila melanogaster	50	Rbp1	FBgn0010252	FBtr0082278,FBtr0082277,FBtr0082276,FBtr0082275	2	4	4	75	3R	6610338	6610356	TATAGGGAGTGGGACTTGG		59	6610395	6610413	CTTCTATCTCGTGCTTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Takr86C	FBgn0004841	FBtr0082315,FBtr0112789	1	2	2	80	3R	6565219	6566919	GACCAAGCACTATTACAATGG		59	6565159	6565178	GCCATAGAAGTGGGATATCG		59	NA	
Drosophila melanogaster	50	CG31477	FBgn0051477	FBtr0082180,FBtr0113408	1	2	2	60	3R	5947869	5947887	ATGTGAAGTTCACTCCGTG		59	5947911	5947929	TCACGTTCTACCTTCTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8147	FBgn0043791	FBtr0082060,FBtr0100522	2	2	2	60	3R	5321990	5322009	TGATCTTCCATATGCCACTC		59	5322029	5322050	GAGGTAGTTACTATCATAGCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34135	FBgn0083971	FBtr0110905,FBtr0110904	1	2	2	60	3R	4576502	4576520	GTGATGTATTTACTGGCGG		58	4576394	4576415	GCTTGAAGTGAATGATCATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3014	FBgn0037519	FBtr0081773	3	1	1	129	3R	3627339	3627357	TACACTATCTCGCTGACCA		59	3627038	3627056	GATTCTCGTCCTTGACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	gfzf	FBgn0053546	FBtr0114531,FBtr0091512	1	2	2	122	3R	2972596	2972675	TACTCGAAGATGAATCCGC		59	2972492	2972510	ATATAGCGTTGAATCCGGC		59	NA	
Drosophila melanogaster	50	CG2911	FBgn0037350	FBtr0113194,FBtr0078740	2	2	2	67	3R	1448390	1448408	GCCCGACTTCTATGAACTC		59	1448341	1448359	TGTAGCTGCACTTGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pi4KIIalpha	FBgn0037339	FBtr0078756,FBtr0078757	1	2	3	186	3R	1388606	1388694	AAGTTGAGATCAACACCGT		59	1388438	1388456	TTCTGAATAACAGCATCGC		58	NA	
Drosophila melanogaster	50	CG12162	FBgn0037329	FBtr0078681,FBtr0078680	2	2	2	269	3R	1294733	1294751	CTGCTAGTTCGGTCTACTG		59	1295039	1295057	AATCGAAGGAGTATCCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hus1-like	FBgn0026417	FBtr0078876	3	1	1	60	3R	634734	634755	ATCAGGAGTACATAGTTCTAGG		57	634695	634714	AGCACAGATAAAGCTCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9809	FBgn0037248	FBtr0078946,FBtr0078945	3	2	3	191	3R	252655	252673	AAGGAGATACCTTTGAGGC		58	252359	252447	AGTCGTTGTAAATCAGCAG		57	NA	
Drosophila melanogaster	50	CG9809	FBgn0037248	FBtr0078946,FBtr0078945	1	2	3	155	3R	252619	252637	AGTCTGAGCCGATATTCTG		58	252359	252447	AGTCGTTGTAAATCAGCAG		57	NA	
Drosophila melanogaster	50	CG9766	FBgn0037229	FBtr0078980,FBtr0113191,FBtr0078979	3	3	3	185	3R	95720	95739	CATTCTGCTGAACAAGAAGG		59	95495	95572	CTAGCGTTCATAACCACTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	snoRNA:Psi28S-2566	FBgn0086661	FBtr0091666	3	1	1	67	3L	18889359	18889377	GTTGAATTACCTGAGTGGG		57	18889310	18889329	GAATTAGATGGTTTGCAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR15821	FBgn0035311	FBtr0072914	2	1	1	64	3L	2172118	2172189	AAATTGGGAATGGCTTCAG		58	2172072	2172090	TTGATCCGCCTATCTATGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	pncr014:3L	FBgn0046272	FBtr0091955	1	1	1	75	3L	14027883	14027901	CGATGTAAGACAGTTGTGG		58	14027826	14027844	CTATTGCAATCTGCTTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32489	FBgn0046767	FBtr0076761	2	1	1	60	3L	7996349	7996367	ATCGTTTGATACAAGCCAG		57	7996391	7996409	CTACCCTATTTCTGCACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Cat	FBgn0010215	FBtr0070038	1	1	1	80	3L	23324108	23327476	GGATAATATGAGGCAATTCGG		58	23324048	23324067	GGATCCTTAAGTTCTTGCTG		58	NA	
Drosophila melanogaster	50	S1P	FBgn0037105	FBtr0078466	2	1	1	134	3L	21609638	21609656	AAGTCACTTGACGACAGAG		59	21609464	21609541	GTAAGAAACTTGGGAGTTCG		58	NA	
Drosophila melanogaster	50	CG10565	FBgn0037051	FBtr0078323	1	1	1	94	3L	21128002	21128478	CTTACGAGATACTGGGCAC		59	21127926	21127944	ATCGATGTCGTTCTGTGAG		59	NA	
Drosophila melanogaster	50	Las	FBgn0029158	FBtr0078229,FBtr0078228	3	2	2	149	3L	20424698	20424929	GCCACGATTATGCTTATGG		58	20424567	20424588	CAGAACAATGTAATCCAATCCC		59	NA	
Drosophila melanogaster	50	eRF1	FBgn0036974	FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177	3	6	6	81	3L	20344765	20344786	TGGAGATTATCACGGATAAGTC		59	20344828	20345922	TTGTAGCGTAAGATACCGC		59	NA	
Drosophila melanogaster	50	Ac76E	FBgn0004852	FBtr0074897	3	1	1	98	3L	19967921	19967999	GCATTAACAAGATTCTGCTGG		59	19968059	19968077	AGTAGCTCTCGTGGTAGAG		59	NA	
Drosophila melanogaster	50	mRpL21	FBgn0036853	FBtr0075022	1	1	1	62	3L	19247703	19247721	GATATCATCCTGGTGGAGG		58	19247659	19247677	CTTATCCAGGCTGATCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3819	FBgn0036833	FBtr0075048	3	1	1	68	3L	18914285	18914304	ATGTGGACAAGCTATACACG		59	18914236	18914254	ATGAATCCATGTCCAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7320	FBgn0036782	FBtr0075128	2	1	1	60	3L	18196194	18196214	GAGGAGGAAACATTCAAAGAG		58	18196235	18196254	TATATCACAGTCAGGAACGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gk	FBgn0020300	FBtr0075126	3	1	1	137	3L	18136678	18136696	GAAGACCAAGTCCCAACTC		59	18136794	18138033	ATTGTTGGAGATCTGATCAGTC		59	NA	
Drosophila melanogaster	50	Tsp74F	FBgn0036769	FBtr0075154,FBtr0075155	2	2	2	93	3L	17886316	17886411	TTTGTGATATTCGTGGGTG		57	17886241	17886259	GATTTGTACCGAGCAACTC		58	NA	
Drosophila melanogaster	50	sec3	FBgn0086475	FBtr0075231	3	1	1	84	3L	17417198	17417277	GAGCTCAACAAAGTCATAAGTC		59	17417135	17417154	CATTGGCGGTCTTTAAATCG		59	NA	
Drosophila melanogaster	50	CG7692	FBgn0036714	FBtr0075215	3	1	1	80	3L	17346768	17346788	CTATTCCTTAACCTGAAGCTG		58	17346829	17346903	GAAAGCAACTTCTTCTCCTG		58	NA	
Drosophila melanogaster	50	CG33256	FBgn0053256	FBtr0075260	3	1	1	60	3L	16898138	16898159	GGAAATTGATGACGAAGATGAG		59	16898179	16898198	GTTGTTATCCGAGATTCCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32170	FBgn0052170	FBtr0075258	1	1	1	60	3L	16871927	16871945	AAACCACAGAGTAGACCAC		58	16871969	16871987	TAACAGGTGCATTGTAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9674	FBgn0036663	FBtr0075342,FBtr0075341,FBtr0075343,FBtr0075344	3	4	4	95	3L	16784163	16784181	GCAGACGATAATGTAACCG		58	16784031	16784104	CTCTCCATATTTGCATGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG32158	FBgn0052158	FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404	3	5	7	126	3L	16485860	16485879	ATTTGACTGGGATGTGAGTG		59	16485591	16485772	AATGATTGTCGTATCCCTCC		59	NA	
Drosophila melanogaster	50	CG13046	FBgn0036595	FBtr0075473	1	1	1	60	3L	16281275	16281293	TCTCACACCTGGATTACTC		57	16281233	16281252	GCGGGATAGTGATAGTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33689	FBgn0053689	FBtr0091669	3	1	1	72	3L	16193778	16193797	CAACATCAATCACACGTGTC		59	16193883	16193903	CGATTCTATATTTCCCGTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	brm	FBgn0000212	FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523	3	4	4	160	3L	15964328	15964407	GGATACCATTCTAGGTCGAG		58	15964187	15964205	GATTCTTACGCTTTCGTCG		58	NA	
Drosophila melanogaster	50	Eig71Ek	FBgn0014851	FBtr0075575	3	1	1	141	3L	15654551	15654572	GAATAGGACGATTTGATGAGAC		58	15654730	15654748	GACATATCATCACAGCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7276	FBgn0036499	FBtr0075546,FBtr0075545	1	2	2	60	3L	15491556	15491575	TACATTCGCTTGATGATAGC		57	15491595	15491616	GATTATAGGTCTTGTTTGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16959	FBgn0036481	FBtr0075655,FBtr0075656	2	2	2	238	3L	15114503	15115737	GATCAGGTCAAGAGAACCG		59	15114283	15114301	TCATAGCAAGACTCCTCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17081	FBgn0036480	FBtr0075638	3	1	1	121	3L	15120743	15120855	CAAACATTGGATCAGTTGCA		59	15120939	15120957	TGATTGTAGCGATCATCGG		59	NA	
Drosophila melanogaster	50	mnd	FBgn0002778	FBtr0075627,FBtr0114529,FBtr0075626	3	3	3	86	3L	14983803	14983821	GTTAATTGCCTGACACCTG		58	14983959	14983977	TAGTACGTAGACGTCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17839	FBgn0036454	FBtr0075695	3	1	2	145	3L	14872646	14873309	GCGAAGTTAATGTCAGATGG		58	14873417	14873435	CATCGAGGAACCTGAATCC		59	NA	
Drosophila melanogaster	50	bmm	FBgn0036449	FBtr0075699	3	1	1	89	3L	14770856	14771041	AAATTCACGCTCTATGACCA		59	14770786	14770804	CACAAGGATTGAAACACGG		59	NA	
Drosophila melanogaster	50	Ptp69D	FBgn0014007	FBtr0075913	2	1	2	82	3L	12731790	12731876	AGAGATTCTTTGAGCAGGG		58	12731922	12731940	AATCCTTTGTGATTTCCGG		57	NA	
Drosophila melanogaster	50	mirr	FBgn0014343	FBtr0075912,FBtr0075911	1	2	2	112	3L	12698330	12698348	ATCTGAAGGAGAACCTGGT		59	12698424	12700490	CAAATCCATGCCATAGCTG		58	NA	
Drosophila melanogaster	50	CG32103	FBgn0052103	FBtr0075983,FBtr0075982,FBtr0075984	1	3	3	146	3L	12398215	12398233	GTACCTGATGACTTCACAC		57	12398022	12398105	TCTTTGTGTTTGTACCTGC		58	NA	
Drosophila melanogaster	50	rols	FBgn0041096	FBtr0076055,FBtr0076057,FBtr0076053	2	3	5	168	3L	12006171	12006190	TTTAACCACAAGAATCTGCG		58	12005822	12006040	GAGTATGATCTCCCGACAG		58	NA	
Drosophila melanogaster	50	CG6931	FBgn0036236	FBtr0076048	3	1	1	90	3L	11984177	11984255	ATATGCTCCCAACGATATTAGG		59	11984305	11984324	TGTGGTTTCTATGTTCTCCC		59	NA	
Drosophila melanogaster	50	mRpL2	FBgn0036135	FBtr0076211	1	1	1	60	3L	11114424	11114442	TGAGCTGAAGTACATCCTG		58	11114466	11114484	CGAGGTCTTGAGGATATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpr10	FBgn0052057	FBtr0076310,FBtr0076308,FBtr0076309	2	3	3	83	3L	10143594	10144087	CATCAGGATAAGGTGCTCAG		59	10143530	10143548	AATGGATTTGGTCTCCTCC		58	NA	
Drosophila melanogaster	50	CG6674	FBgn0036063	FBtr0076354	3	1	1	95	3L	9964533	9964551	AGATCGAGTTCAAGAGGAC		58	9964456	9964474	TTAACTGCGGCTTATCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18180	FBgn0036024	FBtr0076389	2	1	1	62	3L	9634498	9634516	CGAGACATTGGTCTGATCC		59	9634541	9634560	AGGGATCTTGTTGATCAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Shc	FBgn0015296	FBtr0076458	2	1	1	61	3L	9420849	9420867	GTAGGCTCAATGATCCCTC		59	9420892	9420910	CTTCACATTCTCCTTGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF-4E	FBgn0015218	FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487	3	7	7	96	3L	9393614	9393696	AAGAAGAACATTCGTCCCA		58	9393536	9393554	TATCCAGATCGGTCTTGGA		59	NA	
Drosophila melanogaster	50	CG5288	FBgn0035950	FBtr0076553,FBtr0076555,FBtr0076554	2	3	3	81	3L	8977959	8977978	GCTTCAACTCAGAAATCTCG		58	8977752	8977915	CTTTGGAAGCTCGATTCTG		58	NA	
Drosophila melanogaster	50	Cpr66D	FBgn0052029	FBtr0076567	1	1	1	212	3L	8633926	8633944	ATCGGTCAGGGATTATCAG		58	8636162	8636180	AATCCAAACTGGTACGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17352	FBgn0035880	FBtr0076675,FBtr0076676,FBtr0100664,FBtr0076674	2	4	5	124	3L	8347400	8347418	CTACTACATTCGACTGCGT		59	8347236	8347254	ATATGCAGTGATTGTTCCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8042	FBgn0027554	FBtr0076766	3	1	2	157	3L	7967277	7967416	CAAGTAGTTCAAACAGCATCAG		59	7967141	7967159	CTGGAGGTTGATACAGCAG		59	NA	
Drosophila melanogaster	50	CG14838	FBgn0035799	FBtr0076801	2	1	1	146	3L	7579461	7579479	ATTATAGAGGCAAAGCGGG		59	7579586	7579661	CTTCTTACCTTTGATCTCTTCG		58	NA	
Drosophila melanogaster	50	Rac2	FBgn0014011	FBtr0076867	2	1	1	61	3L	7427532	7427550	ATCAGCTATACGACCAACG		59	7427489	7427507	GAATAGTTGTCGAACACCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mus312	FBgn0002909	FBtr0076839	3	1	3	87	3L	7324322	7324400	AGCGACGAAGTAAAGACTG		59	7324516	7324537	TATCGAACTCTTGTGTTAGGTC		59	NA	
Drosophila melanogaster	50	mus312	FBgn0002909	FBtr0110926,FBtr0076840,FBtr0076839	2	3	3	82	3L	7323267	7323287	GATGAAGAGAAGTCCACTGAG		59	7323328	7323408	GATTTATAATCTTCCTTGGCGG		59	NA	InUTR
Drosophila melanogaster	50	CG32388	FBgn0045806	FBtr0076933	2	1	1	110	3L	6976930	6977010	GAAATTCAAATGTCTGCAGC		58	6976839	6976857	AATGGACCCGATTCATCTG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Lcp65Ab2	FBgn0020643	FBtr0076992	1	1	1	243	3L	6139827	6139845	ATTCCTCATCGTCTTCGTC		59	6140052	6140070	TGTGATGGTGAACTTCTCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10486	FBgn0035647	FBtr0114644	2	1	1	88	3L	5898841	5898859	GATACCTGCTTTACGATGG		57	5898690	5898708	AAGGCCAGTGATAGATTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	S6k	FBgn0015806	FBtr0077114	3	1	1	84	3L	5798978	5798997	CACAAGACAAATTCCAGTGG		59	5793803	5798931	AACGTAGGTGAAACCTTGG		59	NA	
Drosophila melanogaster	50	Pmi	FBgn0044419	FBtr0091713,FBtr0091712	2	2	2	67	3L	5773860	5773941	TGTTGTCAATATCAGGTGGA		58	5773971	5773989	GAGGAGACATCTGTCAGTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713	1	5	8	94	3L	5692112	5697030	GTTCCTTCGCAAGATTTCG		59	5697088	5697106	TATATGGTGACGCCATGAC		59	NA	
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713	2	5	8	95	3L	5692112	5697030	GTTCCTTCGCAAGATTTCG		59	5697088	5697107	TTATATGGTGACGCCATGAC		59	NA	
Drosophila melanogaster	50	CG10625	FBgn0035612	FBtr0077140,FBtr0077139	3	2	7	80	3L	5534467	5535606	ATTCCATACACTCCAGATAACG		59	5534342	5534361	GTGATAATACCGACCATCGT		59	NA	
Drosophila melanogaster	50	lama	FBgn0016031	FBtr0077161,FBtr0077160,FBtr0077159	3	3	3	97	3L	5338824	5338842	AACTTATCCGGATTGGGTG		59	5338685	5338764	AGGAAATGGTATTGGACCAC		59	NA	
Drosophila melanogaster	50	CG18808	FBgn0042131	FBtr0073361	3	1	1	60	3L	4806474	4806494	ACTCATATAACCATGGACCAG		58	4806434	4806455	CGAGAGCAATAAATACTTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	axo	FBgn0026729	FBtr0073368	2	1	1	91	3L	4673380	4674963	CAATTAAGACTTTGCCGTGAG		59	4673309	4673327	CGATCCGGATTCTTAACGT		59	NA	
Drosophila melanogaster	50	CG33514	FBgn0053514	FBtr0091456	3	1	1	60	3L	4365597	4365615	TAAGACATGGATCGAGCAG		58	4365638	4365657	CACCAGAAACTGATCATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ida	FBgn0041147	FBtr0073160,FBtr0073161	3	2	2	60	3L	3905670	3905690	GGTATTCAAGCTCATTCAGGA		59	3905710	3905730	GGTCAACAAACTATGTAGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32264	FBgn0052264	FBtr0073186,FBtr0073187	3	2	5	92	3L	3718985	3721549	GGATTAGACTATGCAGGCA		58	3718911	3718929	TTTCGCGTATCACAAATGG		58	NA	
Drosophila melanogaster	50	CG11526	FBgn0035437	FBtr0073083,FBtr0073084	3	2	2	105	3L	3322982	3323003	GATTACTTCAAGGCCAATTACG		59	3322831	3322916	ATATTAGAGCAGCGATGGC		59	NA	InUTR
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996	2	6	15	81	3L	3083796	3085208	TCGCCACTTATATGGTCAC		59	3085252	3085271	TATGGTGCATAGAAGTTGGG		59	NA	
Drosophila melanogaster	50	CG13802	FBgn0035330	FBtr0113127,FBtr0072886	3	2	2	60	3L	2299244	2299264	CCTTCTTTCTGCAATGTTACC		59	2299774	2299793	TTAATAAGCGCCAAGATGTC		58	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13937	FBgn0035287	FBtr0072863,FBtr0072861,FBtr0072862	2	3	3	60	3L	1877653	1877771	CACATTATCTGGTGCAATGTC		59	1877613	1877631	CGTTGAAGTTGAACATCCA		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Patj	FBgn0067864	FBtr0072781,FBtr0072780,FBtr0072779	1	3	3	111	3L	1800627	1800645	AGTAAGGGACTCCCTAGAC		58	1800780	1800798	GTAGTACTTGTGACGGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	alpha-Spec	FBgn0003470	FBtr0072789	1	1	1	133	3L	1781201	1781219	AAGATCATAGAGGAACGCG		59	1779977	1781104	ATGGACGTTCTTGTCTCTG		59	NA	
Drosophila melanogaster	50	Dhc62B	FBgn0013811	FBtr0072793,FBtr0072794	1	2	2	82	3L	1769261	1769341	CAAATTCAAGGGTCAAACTG		57	1769198	1769216	TTGACTGTATCATCGAGGT		57	NA	
Drosophila melanogaster	50	CG9119	FBgn0035189	FBtr0072635	1	1	1	73	3L	1204613	1204631	GAACCAACTGAGTACGGAG		59	1204558	1204576	TCTGCAACTCTGACAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13900	FBgn0035162	FBtr0072597,FBtr0072598	1	2	2	167	3L	827894	827912	AACTGGAGGATATTCGCAC		59	827204	827222	TGGTCTAATGGTCATTGGA		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG1233	FBgn0035137	FBtr0072549,FBtr0072548	1	2	2	132	3L	364782	364800	CCTGTGATCATGAGACCAG		59	364896	364975	TGAAGGTGTATCCGAAAGG		58	NA	
Drosophila melanogaster	50	fwd	FBgn0004373	FBtr0072516,FBtr0072515,FBtr0072517	2	3	3	81	3L	307029	307047	GAAGAACTTCGTCCAAAGC		59	306902	306984	AATGTTGCCATTATGCCTG		58	NA	
Drosophila melanogaster	50	miple	FBgn0027111	FBtr0072505,FBtr0072504	2	2	2	158	3L	268949	269103	ACAAAGATAAAGCTGCTCG		58	269225	269243	ACATAGCAGACAGTTAACG		57	NA	InUTR
Drosophila melanogaster	50	pyx	FBgn0035113	FBtr0072524	2	1	2	84	3L	222205	222277	TTTCCTGGAACTAATGACCG		59	222140	222159	GAGAGTATTCTCTACGCTCC		58	NA	
Drosophila melanogaster	50	5SrRNA:CR33438	FBgn0053438	FBtr0086430	1	1	1	62	2R	15622372	15622390	AATACATCGGTTCTCGTCC		59	15622328	15622346	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3760	FBgn0022343	FBtr0072391,FBtr0072392	2	2	2	124	2R	20826705	20826723	TCCAAGACCTACGTTTCAC		59	20826863	20826882	AACTCGGTATTGGTGATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	bs	FBgn0004101	FBtr0072271	3	1	1	203	2R	20235971	20262943	CGAGGACTCGAAAGATGAC		59	20263110	20263128	TGATAGTTCAATGCTGGCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	PebIII	FBgn0011695	FBtr0072164	2	1	1	62	2R	19914543	19914561	GATGATACTTGCGCTTGTC		58	19914587	19914605	GTGGTGTACTTATCCTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16787	FBgn0034940	FBtr0072207	1	1	1	60	2R	19844214	19844232	CTACACAGTGCGGATAAGG		59	19844172	19844190	CTGGAACATGACCTTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TM4SF	FBgn0020372	FBtr0100255,FBtr0072130	2	2	2	140	2R	19767863	19767957	ATAGCCATATTCCAGAGCC		58	19768061	19768079	CTTGTCCTGTATGGTCAGG		59	NA	
Drosophila melanogaster	50	Ssrp	FBgn0010278	FBtr0072242	3	1	1	134	2R	19694612	19694691	AGAGAACAAAGAAACCCTCC		59	19694497	19694515	TCTCGGTAACCTTTATGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG17662	FBgn0034884	FBtr0072106	2	1	1	60	2R	19493323	19493341	GATCGATCTGAGGACTTCC		58	19493281	19493301	CTATTGCACTATAACCTCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5398	FBgn0034882	FBtr0072071	1	1	1	256	2R	19490580	19490598	TTCCTTGGTTACTTCCTGC		59	19490818	19490900	GTTAGTTGAATCCCTGCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	eIF2B-delta	FBgn0034858	FBtr0072014,FBtr0072015,FBtr0072013	3	3	3	88	2R	19276380	19276398	TGAGCTACGACATTACTCC		58	19276450	19276468	GAGTATGACGGGAACACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34371	FBgn0085400	FBtr0112596	1	1	1	81	2R	19058172	19060020	ATCTCCTCACGATGTACAC		58	19058109	19058127	TTCATGTCGAGGATAACCT		57	NA	
Drosophila melanogaster	50	l(2)k09913	FBgn0021979	FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961	1	4	4	99	2R	18958340	18958358	GAGATGGGATTCGATGTGG		59	18958497	18958515	GGAATCGAATAGTCTCGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30193	FBgn0050193	FBtr0071948,FBtr0071949,FBtr0071946,FBtr0071944	3	4	7	80	2R	18813126	18814633	GGCTTATAATATTGTTCTGCGG		59	18814673	18814692	ATTCCTTGACATCCTTGGTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG9826	FBgn0034784	FBtr0071894	3	1	2	126	2R	18729603	18729621	TTATTCCCATCCTCACACC		58	18729792	18729810	ATGATGAATACCACGTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30259	FBgn0050259	FBtr0071921	2	1	2	81	2R	18591494	18591512	CACATAGAATCCACCGAGG		59	18591139	18591452	TATGGGTATCAACTATCCTGGT		59	NA	
Drosophila melanogaster	50	robo	FBgn0005631	FBtr0071923,FBtr0071922	1	2	2	80	2R	18584836	18584921	GACACTCAAGTCACTATCTCG		59	18584776	18584796	AATACCCTGAGTATTCTCAGC		58	NA	
Drosophila melanogaster	50	CG3290	FBgn0034711	FBtr0071782	2	1	1	121	2R	18094151	18094238	TTGTGTTCATAGAGGGTGG		58	18094048	18094066	GATGTTGGTCATTTCACGA		58	NA	
Drosophila melanogaster	50	Gr58a	FBgn0041239	FBtr0071728	1	1	1	60	2R	17868203	17868224	CCATAGAAACCTCAAGTTACAC		58	17868243	17868263	CAGTAATGAGAAATCACCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15675	FBgn0034648	FBtr0071664	1	1	2	80	2R	17553014	17553716	AGAACACTGGAATCTGTGC		59	17553759	17553778	TCATTTGTGACGAACATGTG		59	NA	
Drosophila melanogaster	50	CG10433	FBgn0034638	FBtr0071690	1	1	2	153	2R	17494012	17494030	TCGAACAAGGGATTGTGTC		59	17493603	17493621	CATTCTTGCAATCCGAACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708	2	9	9	93	2R	17398737	17398915	TTTGCCAGAGGATTACGTC		59	17398972	17398990	ACCAATCACCGACTTTAGG		59	NA	
Drosophila melanogaster	50	Sdc	FBgn0010415	FBtr0071706	3	1	3	130	2R	17286782	17286801	GAAAGATCCGGACTATTCTG		57	17286080	17286689	TATGAGCTGTGTTTATGCC		57	NA	
Drosophila melanogaster	50	Pu	FBgn0003162	FBtr0071578,FBtr0071580,FBtr0071579	3	3	3	116	2R	17068988	17069006	AAATGTTCTCCATGTGCGA		59	17069086	17069163	ATATTTCGACAATGCGTGC		59	NA	
Drosophila melanogaster	50	Treh	FBgn0003748	FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536	3	6	6	81	2R	16972827	16972845	TTTAATGCCATGATGGAGG		57	16972889	16972968	GTGCACTGAAGTACTTATCG		58	NA	
Drosophila melanogaster	50	Treh	FBgn0003748	FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536	1	6	6	80	2R	16972826	16972845	CTTTAATGCCATGATGGAGG		58	16972887	16972966	GCACTGAAGTACTTATCGAC		58	NA	
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494	3	7	7	152	2R	15418202	15419689	CTATTGAGGGTAAAGGCAC		57	15418068	15418087	CTCAATTGTAGATGTCCACC		57	NA	
Drosophila melanogaster	50	CG15086	FBgn0034374	FBtr0086651,FBtr0086649,FBtr0086650,FBtr0086648	2	4	4	61	2R	14567639	14567657	GGATCCTTACTACCAACGA		58	14567540	14567558	TGCATGATCCGTAGTTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10924	FBgn0034356	FBtr0086699,FBtr0113093	1	2	2	60	2R	14421137	14421157	GATGAAGTTCGATAACAAGGG		58	14421179	14421197	GCCAAAGAATCCATTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dp1	FBgn0027835	FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682	2	6	6	84	2R	14306395	14306413	GATCGATAAACGCATCCAC		58	14306458	14306564	GATGTTCACCTTATTATCCTCG		58	NA	
Drosophila melanogaster	50	thr	FBgn0003701	FBtr0086825	3	1	1	82	2R	13752032	13752050	TATTAATTGGAAACCGGCG		58	13751910	13751931	CCATTGAGTATTTGACTACTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5002	FBgn0034275	FBtr0089546	2	1	1	81	2R	13638979	13638997	CACTTGACGTCAATTAGGC		58	13639042	13639285	CTTTAACACGCGTCATGAG		59	NA	
Drosophila melanogaster	50	Amy-p	FBgn0000079	FBtr0087004	3	1	1	270	2R	13007775	13007794	ACTTCCATCTGGAATTACCA		58	13007524	13007542	CTTGTAGGAGATGGGTTGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	fat-spondin	FBgn0026721	FBtr0086976,FBtr0086975	2	2	2	99	2R	12944820	12944898	AAGCCAAATACAGCTTCGT		59	12944961	12944979	ATCACGTCAGAGAAGTGTG		59	NA	
Drosophila melanogaster	50	CG9000	FBgn0034176	FBtr0087059	1	1	1	60	2R	12889048	12889067	CGAGGATACGTTCCATAAGG		59	12889007	12889025	GAAGATGCCGAATTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30461	FBgn0050461	FBtr0100249,FBtr0100251,FBtr0100250,FBtr0100252	3	4	4	60	2R	12883879	12883899	GCAGCTTATTCTCAGTAATCG		58	12883785	12883803	TTTCTTGATTCGCGAACAG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	unc-104	FBgn0034155	FBtr0087079	3	1	4	94	2R	12645901	12646139	GATACCTTCTAGGCAACGT		58	12645825	12645844	GGCTCTCCACATTATAGTCC		59	NA	
Drosophila melanogaster	50	Nach	FBgn0024319	FBtr0089587,FBtr0089588,FBtr0087116	2	3	3	84	2R	12541208	12541228	GTGAACACATTGATTACGACG		59	12541078	12541164	AAGCCCGAATAGAACTTATCG		59	NA	
Drosophila melanogaster	50	RpLP2	FBgn0003274	FBtr0087105,FBtr0087106	3	2	2	94	2R	12473721	12473740	CTTAAACATGCGTTACGTGG		59	12473797	12473815	CAGAGCTGAGGATCTTCTC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Cdk4	FBgn0016131	FBtr0087104,FBtr0087103,FBtr0087102	2	3	3	114	2R	12470443	12470461	TAGGATATCGCTGAACGAG		58	12470537	12471672	GCATACTTCGTACAGTTTGAC		59	NA	
Drosophila melanogaster	50	CG8179	FBgn0034020	FBtr0087325	2	1	1	211	2R	11354265	11354358	AGATTGTCATACAGACCGG		58	11354533	11354551	TCTAATCCTACGCTTGGTC		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG34365	FBgn0085394	FBtr0112588,FBtr0112589,FBtr0112590,FBtr0112587	1	4	4	80	2R	11344304	11350806	TGATATCGAGGAAGAAACGTC		59	11350848	11350866	CTCTTGAGGAGCATCAGTG		59	NA	
Drosophila melanogaster	50	aPKC	FBgn0022131	FBtr0110996,FBtr0110998,FBtr0110999,FBtr0110997,FBtr0110995,FBtr0087426	2	6	6	83	2R	10835446	10835464	CTCTATGAGATGTTGGCCG		59	10835324	10835401	CAGATAGTCCTCAGTGTTCTG		59	NA	
Drosophila melanogaster	50	CG12862	FBgn0033950	FBtr0087483,FBtr0087484	3	2	2	62	2R	10527938	10527957	TAGACCAGATAGCGGTAGAC		59	10527895	10527914	AGATCTCATAAATCTCCCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tra2	FBgn0003742	FBtr0089617,FBtr0089620,FBtr0089615,FBtr0089619,FBtr0089616,FBtr0089621	2	6	7	141	2R	10490376	10490678	GATTGACGCACAAACACAG		59	10490253	10490274	TTGGGTTATAGAGAAATCGACG		59	NA	
Drosophila melanogaster	50	Tfb1	FBgn0033929	FBtr0087548,FBtr0087549,FBtr0087550	3	3	3	126	2R	10251324	10251343	ACCTTGTCATAACCAAAGTC		57	10251490	10251508	TTTATGTCAGCCAGAAAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	SelD	FBgn0020615	FBtr0087564,FBtr0087565	2	2	2	60	2R	10157196	10157215	TACCAAGATGACAGAGAAGG		58	10157155	10157175	CTTAAAGCCTCGCATTATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33156	FBgn0053156	FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681	1	5	5	82	2R	9436514	9436532	TTATGGTGACTCCCATCTG		58	9436391	9436470	TACTGATATCTTCAGCTCCAC		58	NA	
Drosophila melanogaster	50	CG17034	FBgn0033837	FBtr0087707,FBtr0087710,FBtr0087709	2	3	4	147	2R	9303455	9305089	ACTCTGCACATATTCACGG		59	9303067	9303085	TAATGATAGACTGCGGCAC		59	NA	
Drosophila melanogaster	50	CG8776	FBgn0033764	FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869	1	5	5	104	2R	8548250	8548271	CATAAGGTCAACTTCTATAGCC		58	8548111	8548185	CAGCATTACCAGAAAGCTG		58	NA	
Drosophila melanogaster	50	CG8646	FBgn0033763	FBtr0087846	3	1	1	89	2R	8544888	8544973	GATGATTTGGGCTTCAACG		59	8545025	8545044	AATAATGCCAGAATAGGCCA		59	NA	
Drosophila melanogaster	50	CG30055	FBgn0050055	FBtr0087827	3	1	1	94	2R	8477655	8477673	TCTCTTTGTGAGACACCTG		58	8477729	8477749	GTAGCTAGTTAGTTGCATGTG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG8525	FBgn0033735	FBtr0087927	1	1	1	231	2R	8313751	8313769	CACAGAGATCGACATTGTG		58	8314026	8314044	GTTGACTGTCTCCTTTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr49Ac	FBgn0033725	FBtr0087917,FBtr0087916	2	2	2	89	2R	8276583	8276769	CGATCACTCTTACCTGACTG		59	8276821	8276839	TAGAATCCCTTGGCATGTG		59	NA	
Drosophila melanogaster	50	CG30015	FBgn0050015	FBtr0088243,FBtr0113356,FBtr0113357,FBtr0088242	2	4	4	159	2R	6730710	6730728	TCGGATATACTGCGATCAC		58	6730477	6730588	GAATGGAAGTCTCCAATGTC		58	NA	
Drosophila melanogaster	50	CG34363	FBgn0085392	FBtr0112584,FBtr0112585	2	2	2	80	2R	6226463	6226545	CTGGAGAACATGTTTAATGACC		59	6226404	6226423	TGATAGAATGGTCAACTGCT		58	NA	
Drosophila melanogaster	50	CAP	FBgn0033504	FBtr0088342,FBtr0088343	1	2	10	128	2R	6180357	6180375	GTGTCTCCGACAAGATCAG		59	6180932	6181135	CTTTGTAGATGACTTCATTGGG		59	NA	
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414	2	10	10	71	2R	5991854	5991872	TGTCGACAGTCGATAAGGA		59	5991904	5992232	TATCATCGTAACGTTCTGACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12128	FBgn0033473	FBtr0088393,FBtr0088394	1	2	2	60	2R	5914624	5914642	AGGATAAGCCTAATCCGTC		58	5914665	5914684	GCATTCTCGAGAATTGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pka-R2	FBgn0022382	FBtr0112902	3	1	5	179	2R	5885357	5885376	TGTACTTCATTGAGGAGGGA		59	5885045	5885216	TAACATCCAGGAATGCTAGC		59	NA	
Drosophila melanogaster	50	CG1648	FBgn0033446	FBtr0088493	3	1	2	137	2R	5707414	5707433	CAAACAAACTTACAAACCCG		58	5700121	5700139	TTCTTGCTGAAGAGGTTGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG34350	FBgn0085379	FBtr0112560	3	1	1	125	2R	4888981	4888999	CTAGAATGCCACTCACCAG		59	4885419	4888892	TACGACCAGATTGGAACTG		58	NA	
Drosophila melanogaster	50	Pgi	FBgn0003074	FBtr0088679,FBtr0088681,FBtr0088680	3	3	3	105	2R	4799600	4799618	AATCTGTCTGTCCATTGGC		59	4799451	4799531	AACAGGAGCATTCTTCTCG		59	NA	
Drosophila melanogaster	50	stmA	FBgn0086784	FBtr0088715,FBtr0100111,FBtr0088716	2	3	3	113	2R	4618186	4618264	TTTATCCTCGGAATCCAGC		59	4618091	4618109	ACTAACACGCGAGATTAGC		59	NA	
Drosophila melanogaster	50	CG30355	FBgn0050355	FBtr0088726	2	1	1	60	2R	4567145	4567166	TTCCTCTAAGCAAGAAAGAGAC		59	4567106	4567125	CTTAGCCTCAAGGGTAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vps25	FBgn0022027	FBtr0088694	1	1	1	151	2R	4513455	4513473	CTGTACGAAATAGCCTCCG		59	4513588	4513606	TAGAAGAACTTAACGCCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Odc1	FBgn0013307	FBtr0088863	2	1	1	89	2R	3893657	3893675	TACTATCTGAATGACGGCG		58	3893728	3893876	TGCATTGTCCAGATAATGC		58	NA	
Drosophila melanogaster	50	phr	FBgn0003082	FBtr0088839,FBtr0088838	2	2	2	60	2R	3713283	3713301	AGTTTCTTACCCACTTGGA		58	3713325	3713343	GAGAACTCCTGTATGTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tor	FBgn0003733	FBtr0112837	2	1	3	83	2R	3592967	3592985	GAAAGGCTGAAACAACTGC		59	3590738	3592923	TGATATTCGTAGCCCAATACTG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0089016,FBtr0111061,FBtr0089017,FBtr0089019,FBtr0111074,FBtr0089018	3	6	60	124	2R	3219876	3231794	ACAAGTTAATGTACCTCCCAG		59	3219772	3219792	CTTTCTTCCATGTAACTTGGG		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111103	2	1	60	98	2R	3236476	3242205	GGTACCATTCTTCAGATGGT		59	3236397	3236415	ATGAGAGTACCAGAGACCT		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111079	1	1	60	92	2R	3245777	3245795	AACAATGGAGGTGTCTGTG		59	3236463	3245723	TCGATGAACTTGTACCATCTG		59	NA	
Drosophila melanogaster	50	Ady43A	FBgn0026602	FBtr0089050	1	1	1	254	2R	3132515	3132533	ATGGAGAAACTCAACCAGC		59	3131807	3131825	GTCCTGATACATGAGGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tsp42Ea	FBgn0029508	FBtr0086172,FBtr0086171,FBtr0086173	2	3	3	109	2R	2884499	2884517	CAGAAGGACAAGTACCTGG		59	2884589	2884674	CAGCATTTCATGCTGATCTG		59	NA	
Drosophila melanogaster	50	Adf1	FBgn0000054	FBtr0086111,FBtr0086113,FBtr0086112	2	3	3	144	2R	2554510	2554588	ATCCGCATGAAATTACTGTC		58	2554695	2554713	ATCTTGATGGTGTTGAGCA		59	NA	
Drosophila melanogaster	50	Pld	FBgn0033075	FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997	3	6	6	81	2R	2141752	2142360	ACATTCAGGGTTACTTGGT		58	2142405	2142423	CCCTCCTTACTAGTTCCAG		58	NA	
Drosophila melanogaster	50	CG14591	FBgn0033054	FBtr0086026,FBtr0086025	2	2	2	66	2R	1925324	1925344	CCGATTTACATTATCCGAAGC		59	1925222	1925240	TATGTGACCAGTGGAACTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	gp210	FBgn0033039	FBtr0086044	1	1	1	80	2R	1659487	1659583	CATTTGGTGACTCCTTTAACG		59	1659625	1659643	TATACGACTCCGACAAAGC		59	NA	
Drosophila melanogaster	50	CG30440	FBgn0050440	FBtr0086076	1	1	1	90	2R	1372145	1373383	TCTTAAAGGGCTACTATGATCG		59	1372076	1372094	TTAAGGTTTCCGAACAGCA		59	NA	
Drosophila melanogaster	50	CG3107	FBgn0033005	FBtr0086078,FBtr0086077	1	2	3	113	2R	979878	979896	ATGAATGCAATGACTGGTC		58	979973	980041	CAGGTTTGGTCTGAATACG		58	NA	
Drosophila melanogaster	50	snRNA:U4:38AB	FBgn0003931	FBtr0081292	1	1	1	82	2L	19810764	19810782	TGAAGTTCTACTGAGGTGC		58	19810828	19810846	TAGTGGACGGTATTTCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33804	FBgn0053804	FBtr0091808	1	1	1	69	2L	21427249	21427267	AATTTAAAGGAACGTGGCG		59	21427299	21427318	CGCATTTATAAGTGGCAGTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acon	FBgn0010100	FBtr0081473,FBtr0112855	3	2	2	118	2L	21172389	21172468	TTACGATAAGATCCAGCCC		58	21172550	21172568	TAAGCTTGATCCTCTCGAC		58	NA	
Drosophila melanogaster	50	CG10947	FBgn0032857	FBtr0081368,FBtr0081369,FBtr0081370	1	3	3	60	2L	20387006	20387025	GGAGAACTGGTACAAATACC		57	20386965	20386983	GATGTTCACCGAGTACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CdGAPr	FBgn0032821	FBtr0081318	2	1	1	80	2L	19778937	19779026	GGACAGAACATCAACAACC		58	19778875	19778894	GTTAAGGTCCAAGGATAGCT		58	NA	
Drosophila melanogaster	50	fbp	FBgn0032820	FBtr0081321,FBtr0081322	1	2	2	80	2L	19762535	19762556	TCCTATACCACATGTCTAATGG		58	19762294	19762496	GATGTATTTGCCCTGTTTCTC		59	NA	
Drosophila melanogaster	50	spi	FBgn0005672	FBtr0081271,FBtr0081269,FBtr0081268,FBtr0100597	2	4	7	209	2L	19571730	19571749	ATACAGAAACGAGAAGAGCC		59	19569195	19569213	CGTAAACGTTGAGTTAGGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG10188	FBgn0032796	FBtr0081283,FBtr0081282	1	2	2	60	2L	19505689	19505708	ATTATGACCGAGAAACACCA		59	19505648	19505666	TCTCAACGAACACCTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	swm	FBgn0002044	FBtr0081244,FBtr0081245	1	2	2	183	2L	19496695	19496714	TGCGAATAACAAGTCTACCC		59	19496860	19496969	GCCGAAGTTCTTAAAGTGC		59	NA	
Drosophila melanogaster	50	Hs2st	FBgn0024230	FBtr0081288	3	1	1	109	2L	19443926	19443945	GAATTTAGTCCGCAAGAAGG		58	19443776	19443794	AGAAGAAGGGTATCTGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10492	FBgn0032748	FBtr0113043,FBtr0081148	1	2	2	166	2L	19055919	19055937	TATTAACGTTCCACTGCAG		57	19056067	19056264	CTTCGTTGACACTATCGTG		58	NA	
Drosophila melanogaster	50	CG10283	FBgn0032681	FBtr0081085,FBtr0081086	3	2	2	96	2L	18476906	18476989	TCAGTCCCAAGAGATTAATGAC		59	18476831	18476849	CTTGATTTGTTCGTGCAGG		59	NA	
Drosophila melanogaster	50	CG15152	FBgn0032665	FBtr0081034	2	1	1	63	2L	18114686	18114704	GACACGGATGAGACTAAGG		59	18114730	18114749	TAAAGTCAACCTCATCGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0081014,FBtr0100313,FBtr0081020,FBtr0100314,FBtr0081019,FBtr0081013	2	6	12	93	2L	17664218	17665391	TACCATTATGCAGGTTACGG		59	17664144	17664162	ATTATCCGGATCAATGCCC		59	NA	
Drosophila melanogaster	50	beat-IIIc	FBgn0032629	FBtr0080971,FBtr0080972	1	2	2	89	2L	17191092	17193535	GATTGTTGCGTATCTTCCG		58	17191021	17191042	CAATTAACCCGAACATAGTCTC		58	NA	
Drosophila melanogaster	50	CG31784	FBgn0051784	FBtr0080974,FBtr0080973	3	2	2	82	2L	17102630	17105794	TCTATGACAATTCGTGTTCC		57	17102567	17102585	CAATTCGGGACGTATTCTC		57	NA	
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080898,FBtr0080895,FBtr0080903,FBtr0080902,FBtr0080901,FBtr0080896,FBtr0080899,FBtr0080900	3	8	13	166	2L	16770916	16770935	ATTCATCCGTATCCACTTCG		59	16771130	16771351	GACAAATGTCTTTAACACCGG		59	NA	
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080898,FBtr0080895,FBtr0080903,FBtr0080902,FBtr0080896,FBtr0080904,FBtr0080899,FBtr0080900	1	8	13	87	2L	16779200	16780559	GTAACACAAAGGTGTTCTTCC		59	16780608	16780626	ATCCAGGACATGATCTTGC		59	NA	
Drosophila melanogaster	50	jhamt	FBgn0028841	FBtr0080859	1	1	1	60	2L	16366145	16366163	ATGCCAGTAAGCATTACCA		58	16366187	16366205	CATCCAATGTCCAGAACCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vig	FBgn0024183	FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720	1	4	4	81	2L	15065447	15066946	GATAGAACTGGTGTGAAGTC		57	15065385	15065403	CATCAATAGCCTCCTTGAC		57	NA	
Drosophila melanogaster	50	mol	FBgn0086711	FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015	3	5	5	163	2L	14977342	14977361	ATATGAAGGCTTTGACAGGT		59	14977067	14977217	AATAAAGCAGAGAATGCCTG		58	NA	
Drosophila melanogaster	50	Ance	FBgn0012037	FBtr0080553,FBtr0080552	2	2	2	86	2L	13908582	13908660	GTATCTGAGATACTTGGTCTCC		59	13908707	13908725	TTGTCGGGATCATATTGGC		59	NA	
Drosophila melanogaster	50	Sop2	FBgn0001961	FBtr0080569	3	1	2	62	2L	13829347	13829365	ATGGAACAAGGATCGAACC		59	13829234	13829255	CTGTATATGTGGATCTCATGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	sec71	FBgn0028538	FBtr0080537	1	1	2	129	2L	13798835	13798853	CACTGGGCTACTATTTGAG		57	13799015	13799033	TAGTAGTTGGAAACGTGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17217	FBgn0032419	FBtr0080341	1	1	1	60	2L	12170813	12170832	GAGAATGTGCATAAGTTCCT		57	12170854	12170873	GATTCTTGTACGACCATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi21	FBgn0032359	FBtr0080214	3	1	1	63	2L	11285325	11285343	AATCAAGATAGTGGACGGT		57	11285280	11285298	CAATATGCTCTCCGTTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ca-beta	FBgn0015608	FBtr0080217	2	1	4	92	2L	11165650	11165668	GACCCTCAAGACTGTATGG		59	11163929	11165594	CCATGGAATCTCGAGATGG		59	NA	
Drosophila melanogaster	50	CG33129	FBgn0053129	FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172	3	4	4	118	2L	10966083	10966101	GATCAAGACCACCTGTGAC		59	10965901	10966002	ATTGGTCAATGAACTTTGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	UbcD2	FBgn0015320	FBtr0080115	3	1	2	95	2L	10766423	10766442	ATATCAAAGGTCTTGCTGTC		57	10766232	10766251	ATTCTGCAAATATTGCGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31716	FBgn0051716	FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080009,FBtr0080012	2	5	6	90	2L	10398212	10398292	GATATCAGATTTGCCGATTCTG		59	10398343	10398361	GGATTCTCGGGATACTCCT		59	NA	
Drosophila melanogaster	50	CG4968	FBgn0032214	FBtr0079987	3	1	1	99	2L	10307482	10307564	TTTCACGAAACGTTCATGG		58	10307626	10307645	GCTCATTGAAGATCTTGTGC		59	NA	
Drosophila melanogaster	50	NPC1	FBgn0024320	FBtr0079957	2	1	1	99	2L	10216933	10216951	GGTTAAACTTTGGGCTTCG		59	10216792	10216872	GATGATTATCTGTTCCAGCCT		59	NA	
Drosophila melanogaster	50	Dref	FBgn0015664	FBtr0079889	2	1	1	89	2L	9965436	9965454	GTCCATATCTTGGTCCGAG		59	9965305	9965383	TCCAAAGCAATCACCAGAG		59	NA	
Drosophila melanogaster	50	Trx-2	FBgn0040070	FBtr0079839,FBtr0079840	3	2	2	101	2L	9615375	9615393	GACCCTGCAAGATGATCTC		59	9615541	9615559	CAATGTCTTCGCATTCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	gcm2	FBgn0019809	FBtr0079838,FBtr0079837	2	2	2	83	2L	9611428	9611447	TTAGCAAGGTTCTTAAGCGT		59	9611493	9611570	TGCCACAGGCATTATACTG		59	NA	
Drosophila melanogaster	50	jp	FBgn0032129	FBtr0113030,FBtr0079861,FBtr0079860	3	3	3	95	2L	9549654	9550211	AGGTTAAGGACTGGTTTGTG		59	9549578	9549596	GCTAGGTGAGCATGTAGAC		59	NA	
Drosophila melanogaster	50	Eaat1	FBgn0026439	FBtr0079802,FBtr0079801,FBtr0079800	3	3	3	147	2L	9338300	9338321	AGATCATGTACATATCCTTCCC		58	9338514	9338599	TAAGTAATGGCTCTGGTAGC		58	NA	
Drosophila melanogaster	50	CG9314	FBgn0032061	FBtr0079731	3	1	1	66	2L	8706513	8706534	CAGTTGGTCAATGTACATTCAG		59	8706624	8706642	GAACGGATTGAAACGACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hnf4	FBgn0004914	FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846	3	4	4	101	2L	8688854	8688935	TCTTCTTCGATCCCAATGC		59	8688771	8688790	GCCGATCTGATATGTAGTCC		59	NA	
Drosophila melanogaster	50	Glt	FBgn0001114	FBtr0079727,FBtr0079726,FBtr0079725	3	3	3	281	2L	8674101	8674119	ACCATCCATTAACCCATCC		59	8674363	8674775	TGATCATAGATTCGCGACAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Sema-1a	FBgn0011259	FBtr0079691	3	1	3	181	2L	8665511	8666046	TGGCATTGTAACTCAACAC		58	8666191	8666209	AATCACGGTAGATGTAGCT		57	NA	
Drosophila melanogaster	50	Sema-1a	FBgn0011259	FBtr0110930,FBtr0079691,FBtr0110931	3	3	3	60	2L	8564280	8631030	ACTCTACGTTGAATTAGGTCC		59	8631052	8631070	CACAACACTTTCGTTTCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Trf	FBgn0010287	FBtr0079542	2	1	1	61	2L	8073609	8073627	ATCTTCGTCAACGGAAAGG		59	8073652	8073670	CAGTCCATAATGTCCTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Slob	FBgn0024290	FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518	1	4	4	80	2L	7649009	7649028	TTGAGGACTTAGTCCTTTGC		59	7648880	7648969	GCTTAATTGTACTGAAACAGGG		59	NA	
Drosophila melanogaster	50	Pvf3	FBgn0085407	FBtr0112611	3	1	3	125	2L	7155537	7155555	CAGAAAGAACTACTGGCGA		59	7107534	7118888	GTAAATGTTCTCCACATCATGG		59	NA	
Drosophila melanogaster	50	CG11266	FBgn0031883	FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638	2	7	7	117	2L	7036714	7036822	TTTATCACGTACCACAATGC		58	7036902	7036920	TATTCATGTCCAGTCGCTC		59	NA	
Drosophila melanogaster	50	slam	FBgn0043854	FBtr0079254	3	1	1	140	2L	6375225	6375245	TAAGTCAAGTTACCTCCAGTG		59	6375413	6375431	ATTCACCTGTCTGCAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fcp26Aa	FBgn0086265	FBtr0079238	3	1	1	61	2L	5963887	5963905	GAACTATTTCCCACAGCCA		59	5963844	5963863	TAGTTGTTCTGACCACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14014	FBgn0031718	FBtr0114511	2	1	1	60	2L	5550525	5550544	CCAGTTGTATCTGATGAACG		58	5550484	5550502	CATTGCACTTGTAGTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nompC	FBgn0016920	FBtr0079074,FBtr0079075	3	2	3	112	2L	5358663	5358681	ATGACACCACTACACTTGG		59	5358757	5358836	GGATTATAGCCGTTCTCGA		58	NA	
Drosophila melanogaster	50	Rtnl1	FBgn0053113	FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039	3	7	7	144	2L	4994705	4994794	CCCTTTAAGGATTACCTGGA		58	4994580	4994601	TGATCGAATCGATGATATCCTC		59	NA	
Drosophila melanogaster	50	Sgs1	FBgn0003372	FBtr0077393	2	1	1	60	2L	4937566	4937584	AAAGCTAATTACGACTGGG		57	4937608	4937626	ATCCGGGTATTATCTCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3714	FBgn0031589	FBtr0077481	1	1	6	89	2L	4190817	4193320	GATGTTAAGAGGAGTGGCT		58	4190746	4190764	GTCGATTCGAATTCCAAGC		59	NA	
Drosophila melanogaster	50	CG31961	FBgn0051961	FBtr0077484,FBtr0077485	2	2	2	60	2L	4187329	4187351	GACTACTTCTACCAGACTTTCAG		59	4187291	4187309	CATCCTTTAATCGCTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slp1	FBgn0003430	FBtr0077499	2	1	1	80	2L	3825840	3825858	CAAGAAACCCATCAACACC		58	3825901	3825920	GAGTACGGATGAACGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3407	FBgn0031573	FBtr0077515	2	1	1	93	2L	3811501	3811584	TCACGAAAGGACACATTCC		59	3811426	3811445	GATGATGTGGTACTTCAGGT		59	NA	
Drosophila melanogaster	50	CG3921	FBgn0031571	FBtr0077496	2	1	1	80	2L	3800323	3800342	TCGTCACAATTATTGGAGCT		59	3800383	3800466	AGTAGCATAGGATCATCTGAC		58	NA	
Drosophila melanogaster	50	CG31958	FBgn0051958	FBtr0077495	2	1	1	67	2L	3786137	3786155	GAGATGATACGCGAGTACG		59	3786186	3786204	ATCATGTTGTTGGACTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bowl	FBgn0004893	FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493	2	4	4	81	2L	3780517	3780537	GCCCTATTCCTGTGATATCTG		59	3780577	3781922	CTCCTTGGAGTGAATATACCTG		59	NA	
Drosophila melanogaster	50	CG10031	FBgn0031563	FBtr0077544	2	1	1	73	2L	3698651	3698669	TTCAAGTACGGAGGATGTC		58	3698596	3698614	GGAATACAAGCCTCCTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305	3	10	10	112	2L	3623190	3623275	CGAGTTACTTACTGGTACCC		59	3623097	3623115	CATTGCGGGTGATATTCCT		59	NA	
Drosophila melanogaster	50	msl-2	FBgn0005616	FBtr0077571,FBtr0077570	1	2	2	60	2L	3465411	3465430	TAAGAAGCATCTGTTTCCCA		58	3465370	3465388	GTAGGTCTTGAAGTCGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34394	FBgn0085423	FBtr0112641	3	1	4	129	2L	3363097	3363117	CTTCATTGAGAAGAACACGTG		59	3362708	3363006	CTGATTCATGCCTCTCCTC		59	NA	
Drosophila melanogaster	50	CG31689	FBgn0031449	FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706	1	4	4	81	2L	2738712	2738730	GAGACCTTCAACAACTGGT		59	2738773	2738878	AGAAGATGATATGGACTGGTG		58	NA	
Drosophila melanogaster	50	CG31679	FBgn0051679	FBtr0077809	3	1	1	60	2L	2237682	2237702	GGATTATCAAAGGGTATCGTC		57	2237642	2237661	ATTGTAGCGAAGATTCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11723	FBgn0031391	FBtr0077852	3	1	1	60	2L	2145953	2145972	AACTTCGTTTGACTATGTCG		58	2145912	2145933	CTCATTCTCTATCTTGACATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Iris	FBgn0031305	FBtr0077986	2	1	1	60	2L	1133498	1133516	GAATGCCATAACTGAAGCC		58	1133456	1133474	AAGGACAAGAGGACTAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ia2	FBgn0031294	FBtr0089789,FBtr0089790	2	2	2	80	2L	1014710	1014791	TATCACATCTATGAGGTTCACC		59	1014651	1014671	GTTCTTCAGGTAGAAAGAACG		58	NA	
Drosophila melanogaster	50	dock	FBgn0010583	FBtr0078013,FBtr0078015,FBtr0078014	3	3	3	102	2L	831534	831552	TATTATGGAGCCATCACCC		58	831618	831723	AGTCTCCCATGTTAGTCTC		57	NA	
Drosophila melanogaster	50	CG3164	FBgn0025683	FBtr0078153,FBtr0078155,FBtr0100379,FBtr0078154	1	4	4	80	2L	123790	123872	TATTACGATCCTATCATTCCCG		59	123731	123750	TAGGACTTTAGCGAGTACCA		59	NA	
Drosophila melanogaster	50	galectin	FBgn0031213	FBtr0078101	3	1	1	108	2L	74976	74994	TAAGTTTCACGGTGACTGG		59	75125	75143	AACCGTGGATTAATGTGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CR32661	FBgn0030356	FBtr0073593	1	1	1	289	X	11812517	11812634	GCGACGGAAATCTATTTGTG		59	11812183	11812201	GTTGACCCTTACCAAGGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32820	FBgn0052820	FBtr0070053	1	1	2	252	X	21484496	21484637	GAACATGAATCGCAACCTC		59	21484262	21484280	GATGTGCAGTGGTATCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12231	FBgn0031026	FBtr0074779	1	1	1	61	X	19425589	19425607	GGAGATCAGTACCGAAGAC		58	19425546	19425564	ACAGGTCGTAGATGTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9903	FBgn0030756	FBtr0074297	1	1	1	60	X	16433702	16433792	CTGGCAGATTCTTGTAGCT		59	16433660	16433681	CAGATAAGTGGATAGATAGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4239	FBgn0030745	FBtr0074270,FBtr0074269,FBtr0074268	3	3	3	93	X	16281322	16281397	GGTACGTCGTCTTCTACAC		59	16281454	16281472	TAGATCTCCTTCATGGCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8928	FBgn0030711	FBtr0074132	3	1	1	82	X	15839282	15839301	AATTGGATAGCTACCTTGTG		57	15839345	15839432	ATGATTTGAGGCATCTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9065	FBgn0030610	FBtr0073966	3	1	1	71	X	14978594	14978675	GAAATATCCGTCTCGAACC		57	14978541	14978559	AACTCCTTGAGATGCACTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG34408	FBgn0085437	FBtr0114584,FBtr0114585,FBtr0071439,FBtr0112675	2	4	4	81	X	10121919	10121937	AGAACTCCACCATATTGGC		59	10121982	10122065	CGTATGAGCAGAGTCACTG		59	NA	
Drosophila melanogaster	50	CG1468	FBgn0030157	FBtr0071388	2	1	1	73	X	9772671	9772692	CGATGATGACGAATTAAACTGG		59	9772726	9772867	TCACTACATCTCCACACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9034	FBgn0040931	FBtr0071343	2	1	1	154	X	9053866	9053942	TTGTGTACCAAGATGTCCG		59	9053730	9053748	TCCTTGGCATAGTAGTTGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11284	FBgn0030056	FBtr0071222	1	1	1	181	X	8581603	8581624	CTACAATTCGAAGTACAAGGAC		58	8581766	8581859	ATAGGCAATCGGAATCCAG		59	NA	
Drosophila melanogaster	50	sws	FBgn0003656	FBtr0071126,FBtr0071125	1	2	2	104	X	7852380	7852399	AAGAAATGGAATCCCTTCAC		57	7852235	7852313	TTTGACCTCCTCTAGTTGG		58	NA	
Drosophila melanogaster	50	Cec-Psi1	FBgn0000280	FBtr0085613	3	1	1	62	3R	26037273	26037291	CATCCTGACCACTTATTGG		57	26037317	26037396	AGACCAACGTCTAATGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1746	FBgn0039830	FBtr0085773,FBtr0085774,FBtr0085772	3	3	3	209	3R	27043629	27043647	AGTACTTGCGACCATTGAG		59	27042876	27042895	CGAATACTGTTCCGATACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5706	FBgn0039175	FBtr0084637	2	1	1	137	3R	20078129	20078221	TACACCGATGATGAGTTCC		58	20077947	20077966	GTATATGATCTCCTCGCTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13604	FBgn0039137	FBtr0084509	2	1	4	103	3R	19817569	19817588	ATACCTATGAGCAGTTGGAC		58	19816967	19817503	GAGTGAGATGGATCGACTG		59	NA	
Drosophila melanogaster	50	CG10375	FBgn0039116	FBtr0084458	1	1	1	114	3R	19594040	19594185	ACGGATCAAATGATTGCAG		58	19594263	19594281	TGACCATAACGTAGATGGC		59	NA	
Drosophila melanogaster	50	CG13838	FBgn0039041	FBtr0084344	3	1	1	86	3R	18868181	18868199	AATTCCAGCTTGGATGACC		59	18868249	18868267	GATTAGCCTCCGAATCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rtet	FBgn0028468	FBtr0084009	2	1	1	80	3R	16935847	16935867	GTCACATTTCTGATGTACCAC		58	16935909	16935984	CATGATTACACCCGTTGTC		58	NA	
Drosophila melanogaster	50	sec15	FBgn0038856	FBtr0084034	1	1	1	60	3R	16932398	16932416	GTTACACCGTGAACATCCT		59	16932292	16932376	ACCTCATTATAATGATCCCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	TotC	FBgn0044812	FBtr0083972	3	1	1	65	3R	16698768	16698849	TTCTCTACTATGCCTTGCC		58	16698878	16698896	CTTTCCTCGTCAGAATAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34008	FBgn0054008	FBtr0100063	2	1	1	85	3R	16406880	16406899	AATCACATTGATACCAGCAG		57	16406746	16406764	TTAAATATCGTGCATGGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mRpL55	FBgn0038678	FBtr0083754	3	1	1	77	3R	14920421	14920440	TATATCCCACAGTTGTGGTG		59	14920307	14920381	GCTTGATAATCTTCCTGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gyc88E	FBgn0038295	FBtr0083028,FBtr0083027,FBtr0110961	3	3	3	116	3R	11013199	11013217	TTCAGCAGAGATCTCATGC		59	11013295	11013377	CTCATCCAACAATCTCATGGA		59	NA	
Drosophila melanogaster	50	Aats-met	FBgn0027083	FBtr0082895	1	1	1	237	3R	10078533	10084353	AACTACAGCCACGTAAAGG		59	10077695	10077713	AGTGGAAGTGATTGCACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	svp	FBgn0003651	FBtr0082564,FBtr0082563	2	2	3	295	3R	8107954	8115931	GACAATTTACCTGCGAAGG		58	8119839	8119857	GTAGGAACTGAGGTACGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34360	FBgn0085389	FBtr0114581,FBtr0112576,FBtr0114582	2	3	5	235	3R	5701940	5756098	AATGAGGAACCCATTGAGC		59	5769232	5769250	AGATAGTTGCCGTAGTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	alpha-Est5	FBgn0015573	FBtr0081547	1	1	1	106	3R	3361247	3361464	GATTGTTTGGGATTCCTATCG		58	3361161	3361179	GAGATGTACTGCTTGACCC		59	NA	
Drosophila melanogaster	50	Alh	FBgn0037471	FBtr0081613,FBtr0113199,FBtr0081612,FBtr0081614,FBtr0081615	3	5	6	164	3R	2926915	2926936	GAAGATCAGCTATGAGAAACAG		58	2925158	2925176	TTACTCAGTACGACCAAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14673	FBgn0037352	FBtr0078738	2	1	1	81	3R	1452574	1453045	AATTGAGCTACACCTGTGG		59	1452511	1452530	GACTCATCGGAATCATCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14659	FBgn0037284	FBtr0078873	2	1	1	60	3R	656747	656766	ATTCCACCCAACTATACCAG		58	656706	656726	GCTGTTGCTTAGTCTTTATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113339,FBtr0078898,FBtr0078902,FBtr0113341,FBtr0078899,FBtr0078901,FBtr0113340,FBtr0078897,FBtr0078900,FBtr0113338	3	10	15	218	3R	110087	110105	TAGCTAAGCAGATGGTTGG		59	120999	121299	TGATGTTGTACTTATCGCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13040	FBgn0036608	FBtr0075431	3	1	1	226	3L	16318778	16318861	GCTTCATTGCTATCTGTGC		59	16318570	16318588	AGCCACAGTCTTAATCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34452	FBgn0085481	FBtr0112758	3	1	1	80	3L	15680220	15680239	TGCTAAAGACGTATAGTCCC		58	15680042	15680178	CTAGCATAAAGACCAGACCA		58	NA	
Drosophila melanogaster	50	CG32135	FBgn0052135	FBtr0075760	1	1	1	60	3L	13961103	13961124	GGAGATATCATCGGATACTCTG		59	13961145	13961163	AGTCTGCAATACGAATGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snRNP69D	FBgn0016940	FBtr0075952	2	1	1	99	3L	12727057	12727075	TGAAGCTAAGTCACGAGAC		59	12726976	12726994	TTCAGGTGAGTGTTCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pbgs	FBgn0036271	FBtr0076011	3	1	1	60	3L	12263572	12263590	TTCCTATCCGTATCACACG		58	12263530	12263548	ATACAGCATAGCGAACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7512	FBgn0036168	FBtr0113163	1	1	1	83	3L	11511464	11511553	CTAAGCAGGATAGATCCCAC		59	11511599	11511617	CACATAATCACACTTGCGG		59	NA	
Drosophila melanogaster	50	fry	FBgn0016081	FBtr0076417,FBtr0110843	2	2	2	80	3L	9625379	9625399	CAGAAGTGGGATGAAATTTCC		59	9625257	9625339	TACTATAAAGGCTTCTGTGCG		59	NA	
Drosophila melanogaster	50	CG4484	FBgn0035968	FBtr0076503	3	1	1	232	3L	9196872	9197216	AGTTAATGAAGTGGTTCGGA		58	9196599	9196619	CTGTTTCAGTGGTACTATCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Tequila	FBgn0023479	FBtr0076526,FBtr0076525,FBtr0076528	1	3	4	100	3L	9082961	9082979	AAAGATGAGGCTAACTGCC		59	9083042	9083131	CATTGACCATTAGCCTTGAC		58	NA	
Drosophila melanogaster	50	CG32372	FBgn0052372	FBtr0076793	1	1	1	80	3L	7518524	7518542	GATGGCATGATTCGATTGG		59	7518584	7518665	CAACAAAGTCATTTCCAAGGG		59	NA	
Drosophila melanogaster	50	CG10486	FBgn0035647	FBtr0114644	2	1	1	71	3L	5898734	5898833	TTTGGTGCTCGAGTATGTG		59	5898681	5898699	GAGTAGAACAAGGCCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12493	FBgn0035571	FBtr0073363	3	1	1	61	3L	4753579	4753597	TGAAGGACCTATTGATCGT		57	4753363	4753555	CAAGTCATCTGACATACCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycJ	FBgn0010317	FBtr0073128,FBtr0073127	3	2	2	84	3L	3466872	3466968	GCCGTCTACTATATGGATCG		59	3467014	3467033	TATGAAGACAAGTGATGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	5SrRNA:CR33380	FBgn0053380	FBtr0086372	1	1	1	62	2R	15643741	15643759	AATACATCGGTTCTCGTCC		59	15643697	15643715	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5339	FBgn0034925	FBtr0072220	2	1	1	93	2R	19785296	19785314	TGTTCATACTGTCCGAGGA		59	19785164	19785239	ATATCCAGCAACGTGACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12782	FBgn0034838	FBtr0072048	1	1	1	108	2R	19152611	19152629	TAGAATCGAACCAGCTGAG		58	19152465	19152539	AACCTAATGGACTTGTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp58d	FBgn0034770	FBtr0071872	2	1	1	143	2R	18594758	18594830	TTTCTATCGTGCTTTGTGG		58	18594936	18594955	CATGGCAATGTGATAATCCT		58	NA	
Drosophila melanogaster	50	mei-S332	FBgn0002715	FBtr0071761	2	1	1	152	2R	18010962	18011041	GATAGAAGAGCCAACAAGC		58	18011155	18011175	GCTAAACAGACGATTGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ipk1	FBgn0050295	FBtr0113368,FBtr0071515	3	2	2	114	2R	16764803	16765127	CTAAGGGAATACGAGCACC		59	16765205	16765223	CAATAGAAACGCGACTCTG		58	NA	
Drosophila melanogaster	50	CG5323	FBgn0034362	FBtr0086706	2	1	1	221	2R	14502750	14502829	CAGAATGAGATGCACTTGTG		59	14503110	14503128	CTGATCCTCATTGGGACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	qkr54B	FBgn0022987	FBtr0086925,FBtr0086923,FBtr0086924	2	3	3	92	2R	13358308	13358326	CCAATGAGTACATACGCGA		59	13358382	13358455	TTTCTATCTCGCCTTCCAG		58	NA	
Drosophila melanogaster	50	Ercc1	FBgn0028434	FBtr0087448	2	1	1	65	2R	10741043	10741119	TCTAATCCACACCAGAAGC		58	10741148	10741166	AGCATCAGTCTTGTTCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8067	FBgn0033891	FBtr0087595	2	1	1	60	2R	9871620	9871638	TAGTTAAGGACGAAGAGCA		57	9871718	9871737	CTAGAGATGACCAGATCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG16935	FBgn0033883	FBtr0087622	3	1	1	99	2R	9748784	9749140	ATTCAGGGTAAATACCCGG		58	9748703	9748721	CAAAGCCTTTGACTTTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sug	FBgn0033782	FBtr0087789	2	1	1	170	2R	8816677	8816695	GGATACGGATATCGTCAGC		59	8816829	8817289	TCTATCGCAATCTGTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7222	FBgn0033551	FBtr0088223	3	1	1	80	2R	6701649	6701668	TCGGTAATGAAGAGCTACTG		58	6701708	6701797	TGATCCAGTACATATCGTAGAC		58	NA	
Drosophila melanogaster	50	CG12309	FBgn0033542	FBtr0088215	2	1	1	60	2R	6613425	6613443	GGTCAGACACTTATCCTCC		58	6613467	6613485	CAGCTCCACTGATAGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or46a	FBgn0026388	FBtr0088331	3	1	2	94	2R	6029333	6029351	TTGTCCTTCTCATGATGCA		58	6029409	6029488	GATAGAACCAAAGGCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jra	FBgn0001291	FBtr0088411,FBtr0088410	2	2	2	62	2R	5984793	5984813	GCTGCGAACTTAAGTATTCAG		59	5984837	5984855	AGGTATGATCTGAATGGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1902	FBgn0033434	FBtr0088531	3	1	2	173	2R	5491676	5491758	CTCGTTCAGGAATATTCGC		58	5491895	5491913	CTATGTTCCAGTTGTCGTC		57	NA	
Drosophila melanogaster	50	CG12769	FBgn0033252	FBtr0088828,FBtr0088827	2	2	2	120	2R	3942343	3942423	CCTCACTGATCAAGGTCTC		59	3942241	3942259	TTGTTGTTACTCTCCAGCG		59	NA	
Drosophila melanogaster	50	CG17510	FBgn0039969	FBtr0086073,FBtr0086074	2	2	2	84	2R	1491809	1491827	CAAGGAGTATACGTCTGGC		59	1491512	1491761	ATATTCCTCTAGGGAGCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31619	FBgn0051619	FBtr0110959,FBtr0085901,FBtr0085902	1	3	3	110	2L	21713301	21716335	GATCCCACCTACATCAAGG		59	21716408	21716427	CGTTCGAGAGTATTCAAGGA		59	NA	
Drosophila melanogaster	50	Mio	FBgn0032940	FBtr0081524,FBtr0081527,FBtr0081528,FBtr0081526,FBtr0081525	3	5	5	84	2L	21286543	21286561	AGTCTTGATGAGCTACGTC		58	21286414	21286496	TATTTGTAACAGCTGGACGA		59	NA	
Drosophila melanogaster	50	CG31626	FBgn0051626	FBtr0081485	3	1	2	125	2L	21233892	21236653	TATTAATTATCCGCCTCTGGG		59	21233787	21233806	ATTATTGCTGGATATCCGTC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9264	FBgn0032911	FBtr0081463,FBtr0081462	2	2	2	80	2L	21079050	21079070	TCTAATTACGGGATTGGTCAG		59	21079110	21079298	TCCTGAGATCTATAATGCACC		58	NA	
Drosophila melanogaster	50	phr6-4	FBgn0016054	FBtr0081404,FBtr0081405	1	2	2	60	2L	20644599	20644680	TAATAAGTTTCCGGGAGGC		59	20644557	20644575	ATCCTTTAGGGATTCCTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG10188	FBgn0032796	FBtr0081283,FBtr0081282	1	2	2	131	2L	19506345	19507491	AGGTATTTCGACCCATTCG		59	19506232	19506250	ATTGAGCTCGTCGATATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6453	FBgn0032643	FBtr0080998	1	1	1	154	2L	17483290	17483308	TAGATGCTTTCGTAACGCT		59	17483089	17483172	TTCTTCGCTTAGCTTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyt-c-d	FBgn0086907	FBtr0080888	3	1	1	61	2L	16719329	16719347	GAATTTGGACGAGTACCTC		57	16719372	16719390	CGAACACCATCTTTGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	beat-Ib	FBgn0028645	FBtr0080808	3	1	1	126	2L	15906996	15908081	GAAATCGATGTCGAGACTG		58	15906888	15906906	CGATGGAAGTATCGAAGGT		58	NA	
Drosophila melanogaster	50	CG12636	FBgn0028854	FBtr0089265	1	1	1	80	2L	14726510	14726728	GCGTACCAGATTAATGTGAC		58	14726449	14726468	AATAACGTGTATGTGGTCGA		59	NA	
Drosophila melanogaster	50	Sop2	FBgn0001961	FBtr0080570,FBtr0080569	2	2	2	175	2L	13829263	13829350	AACCCAGATTGCCTTATCG		59	13829106	13829124	ACACATAGGCATTACGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	JhI-21	FBgn0028425	FBtr0089655,FBtr0089656	3	2	2	112	2L	12054492	12055097	TTATTTACACCGAATCCGTG		57	12054399	12054417	AGATCTTGTGATGCATGTG		57	NA	
Drosophila melanogaster	50	CG14932	FBgn0032375	FBtr0080257	1	1	1	60	2L	11790397	11790416	CCCATATGTCACTTATGAGG		57	11790495	11790513	GGTAATCTCCAAAGCACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CHIP	FBgn0027052	FBtr0080027	1	1	1	100	2L	10438801	10438888	GAACGTCGAAAGAAACGTG		59	10438949	10438970	TCATACGTAATTCCAGATGGAG		59	NA	
Drosophila melanogaster	50	CG9287	FBgn0032057	FBtr0079753	1	1	1	169	2L	8677654	8677673	CCCACGATTTCTTTAATCGT		58	8677358	8677377	ATAATCGAACGAGTAGAGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	Ugt37b1	FBgn0026755	FBtr0079242	2	1	1	94	2L	6225744	6225817	GAATGCCAGGATCTACAGG		59	6225875	6225893	AGGCAAAGAAGATTAGCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15625	FBgn0031644	FBtr0077390	1	1	1	97	2L	4890351	4890433	GATATCCACAGTACATGAACAC		58	4890491	4890509	CTTGATGTTCATCGCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3251	FBgn0031622	FBtr0077422	2	1	1	63	2L	4690496	4690569	CTGAAGTTAGAAAGGCAAGAG		58	4690453	4690471	TTCCGAAAGAGTTGACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Psf2	FBgn0031599	FBtr0077461	1	1	1	85	2L	4386822	4386840	AAGTGCCGAATTGTACCTC		59	4386697	4386773	GTAAAGAACTTTGAGCGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17265	FBgn0031488	FBtr0077646	1	1	1	60	2L	3014569	3014653	CCAGAACAAACTACGTCAG		58	3014674	3014695	CTCTAGATTATCGGTGATTAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3119	FBgn0031466	FBtr0077691	1	1	2	121	2L	2837280	2837357	AGATGACGATACGTACGTG		58	2835536	2837195	CGCCAGACATATAACTCAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	BBS8	FBgn0031255	FBtr0078058	1	1	1	116	2L	424911	424929	CAAATCGACTTGGTTCTGC		59	425009	425087	GAAGTCACCAGAAGTCACC		59	NA	
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089657,FBtr0089661	2	2	7	102	X	17836890	17836908	AACTACTTCTATCACCGCG		59	17835182	17836826	TGTGTTGACCTAATGTACCTG		59	NA	
Drosophila melanogaster	50	CG32694	FBgn0052694	FBtr0071412,FBtr0071411	1	2	4	108	X	9898694	9898712	CAATGATCTCCAGCTCTCC		59	9898782	9899196	GAACAGATTACTCTTGTTGCG		59	NA	
Drosophila melanogaster	50	l(1)G0255	FBgn0028336	FBtr0070954,FBtr0070953	2	2	2	85	X	6575394	6575476	TTCGGCTATTGTCTGATGG		59	6575524	6575543	GATCTTGGCAATATTCTCGC		59	NA	
Drosophila melanogaster	50	yin	FBgn0015565	FBtr0070632,FBtr0070633,FBtr0070631	1	3	3	174	X	3759040	3759114	GATGCCAACTAAAGCTGTG		59	3758884	3758903	CAAAGATCCTGCGTTAATGG		59	NA	
Drosophila melanogaster	50	CR41604	FBgn0085814	FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269	1	4	4	104	U	3449415	3449487	TTTCTGAAGCAAAGTCCCA		59	3449555	3449573	CTTGATACTGATCTCCCGC		59	NA	
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451	1	4	8	94	4	162671	162692	GCCGCTTAGTTCATTAATATCC		59	162747	162837	GATGAACCCAACAAGTCAC		58	NA	
Drosophila melanogaster	50	ocn	FBgn0041102	FBtr0085599	3	1	1	200	3R	25863172	25863190	ACCATTGTAAGAGGATCCG		58	25862881	25862899	CAGTATGTCCTTCGTCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085146,FBtr0085143,FBtr0112834,FBtr0085139	3	4	12	139	3R	22892376	22892851	TCTTTAATAGGACGGACACG		59	22892129	22892147	GTCATTCCTCAAAGGACGA		59	NA	
Drosophila melanogaster	50	mRpL45	FBgn0038996	FBtr0084272	1	1	1	60	3R	18444543	18444561	TTCGTAAGCTCAAGTTCGT		59	18444585	18444603	ATATCCTCCTGTTTCTCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6455	FBgn0019960	FBtr0084188	2	1	2	152	3R	17847984	17848135	ATCACCTACGCCAAATACG		59	17847850	17847870	AGACTTGACCTTATCGATCTG		59	NA	
Drosophila melanogaster	50	ire-1	FBgn0038736	FBtr0113248	1	1	2	127	3R	15683399	15686380	CAATAGCAGATGATCCTCCT		58	15683291	15683310	CGGTAACTTCTTAAGACTGC		58	NA	
Drosophila melanogaster	50	CG17836	FBgn0038661	FBtr0083701,FBtr0113246,FBtr0083702,FBtr0083703,FBtr0083700	3	5	5	92	3R	14751507	14751633	AATGATGATCGGTTCGAGG		59	14751689	14751707	CTCTACGATGTCTGCATGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG7208	FBgn0038575	FBtr0083618,FBtr0083617	1	2	2	281	3R	14010549	14010567	AAGAGCTCTATGCTTCTGC		59	14010222	14010240	AAATATGGAAGCCATGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	alt	FBgn0038535	FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416	3	6	6	165	3R	13500933	13500951	GTAGCAACCACAATAGCAC		58	13500723	13500804	AATGTGTTTGTCGTCTTGG		58	NA	
Drosophila melanogaster	50	srp	FBgn0003507	FBtr0083216,FBtr0083215,FBtr0100595	1	3	3	88	3R	11827969	11827987	GGAAAGTGGTTCATTGGTG		58	11828036	11828140	GTGGTTTCATATCGTCATTGAC		59	NA	
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957	2	1	12	100	3R	11126777	11126795	CAACACCCGTCTAAAGGAG		59	11128938	11132074	CGATTAGGTCGTCTTCGAG		59	NA	
Drosophila melanogaster	50	CG5196	FBgn0038039	FBtr0082585,FBtr0082584	2	2	2	114	3R	8236622	8236640	GTATTCAATGACGAGTGCC		58	8236772	8236790	CTCGTTTCTCCTCCTTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sp7	FBgn0037515	FBtr0081740,FBtr0081742,FBtr0081743	2	3	4	92	3R	3586989	3587741	ACAAGGAAGTTGTAGGAATCC		59	3587795	3587813	TAAGACTGCTGAATCACGG		59	NA	
Drosophila melanogaster	50	djl	FBgn0037463	FBtr0081631	2	1	1	72	3R	2886919	2886938	GAAGGAATCAAACCTTTCGT		58	2886973	2886991	CTTCTGGCATTCCTTTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34113	FBgn0083949	FBtr0110806,FBtr0110807	2	2	2	81	3R	1699263	1701808	GATCTATCAGATCTGATGCCT		58	1699202	1699220	TCTGATTGACGCTGTAGAC		59	NA	
Drosophila melanogaster	50	CG6933	FBgn0036952	FBtr0074855,FBtr0074854,FBtr0074853	2	3	3	61	3L	20211888	20211906	TGTACCCATAACCGATGTG		59	20211845	20211863	TTCTTGCAACCCTCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34258	FBgn0085287	FBtr0112452	3	1	1	178	3L	19944749	19944767	ATAGTTATCCGGACTGCCT		59	19944535	19944553	ATAGGTTTGCTTAGTTGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Eip75B	FBgn0000568	FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149	3	4	4	111	3L	17948399	17948417	GAGATGGATATCGTTGGCT		58	17948141	17948324	TGAGTATTCCGATCTGCTG		58	NA	
Drosophila melanogaster	50	CG34247	FBgn0085276	FBtr0112441	2	1	1	88	3L	16254433	16254452	GAATCGCATCTTTACCACAG		58	16254364	16254382	ATGTACTCATAGGTCAGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ATPsyn-b	FBgn0019644	FBtr0076406,FBtr0076405	1	2	2	66	3L	9724145	9724163	GAGACTCTCAACAAGTGCA		59	9724193	9724211	TCGTTTAGGCAGACTTGAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4483	FBgn0035970	FBtr0076502	1	1	1	60	3L	9229684	9229702	GCATCAAACTAAAGGACGA		57	9229642	9229662	GTTAATAGAGTGATTGGACCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7387	FBgn0035852	FBtr0076723	2	1	1	60	3L	8184995	8185013	TCTAGCGACTATTTCCGAC		58	8184953	8184971	AGATGTTTAGGTGCTTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nmo	FBgn0011817	FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758	1	6	6	141	3L	8040250	8040352	GTCTTCGATCCGGATAAGC		59	8040457	8040475	AATCAGCCGTATACTGACG		59	NA	
Drosophila melanogaster	50	CG32396	FBgn0052396	FBtr0076969	3	1	1	60	3L	6524162	6524180	GTGTTCTTTAACGCAACGG		59	6524203	6524222	CCGTGTCTATCAGTATGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Scsalpha	FBgn0004888	FBtr0073151	3	1	1	75	3L	3817925	3817943	GTCATTGTGACCAGGAGTC		59	3817981	3818000	TTTACACTAACTCCAGACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gsb	FBgn0001148	FBtr0072444	1	1	1	60	2R	20951918	20951939	ATCATCAGGTTGATCAGAAGAG		59	20951958	20951978	CCAAAGTATGGATAGGTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4806	FBgn0035048	FBtr0072332	1	1	1	60	2R	20554397	20554415	CCCAATATCTTCGGAACAC		57	20554298	20554317	CAGCACGATCCTCTATACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)tid	FBgn0002174	FBtr0089505,FBtr0089503,FBtr0089504	2	3	3	75	2R	19596287	19596305	AAACCAAAGCGAAAGAAGG		58	19596344	19596362	ATCTTGCTTATGAAGCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	apt	FBgn0015903	FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067	3	5	5	85	2R	19484451	19484469	TTTATGAAGATTGCCGCCA		59	19484517	19484598	ATGTACTGTGTCATTTCCGT		59	NA	
Drosophila melanogaster	50	PIP5K59B	FBgn0034789	FBtr0071901,FBtr0110862,FBtr0071900	2	3	3	100	2R	18763724	18763743	TATATTCTACCTGACGACCG		58	18763803	18763886	GATTCATATAGTAACCAGGCAG		58	NA	
Drosophila melanogaster	50	CG30461	FBgn0050461	FBtr0100249,FBtr0100251,FBtr0100250,FBtr0100252	1	4	4	60	2R	12883879	12883899	GCAGCTTATTCTCAGTAATCG		58	12883785	12883803	TTTCTTGATTCGCGAACAG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Ext2	FBgn0029175	FBtr0100512,FBtr0100513	2	2	2	60	2R	12034900	12034918	GAGTAGGATCTTTCCGCTG		59	12034858	12034879	GTTGGTATCAATGGTATTCCAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k05713	FBgn0022160	FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309	3	4	4	112	2R	11745506	11745703	TACCTTCAGATGATGTCGG		58	11745412	11745430	CTGATCTGCTTCAGATTGG		57	NA	
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930	1	5	6	105	2R	8335509	8335527	ATCATAACCTCAACAAGCG		57	8335595	8335676	GAGTTATCACTTGTGTACGC		58	NA	
Drosophila melanogaster	50	Tom7	FBgn0033357	FBtr0088657	3	1	1	150	2R	4839313	4839331	GGAGTTAAGGATCGTTTGG		57	4839553	4839572	TTTACTGCCATAACAGACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyt-b5	FBgn0033189	FBtr0088906	3	1	2	135	2R	3422534	3422552	CTTCGCTCGAGTTCTTAGG		59	3422887	3422905	AACGTCCTCAAAGTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pld	FBgn0033075	FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997	1	6	6	80	2R	2141751	2142360	GACATTCAGGGTTACTTGGT		59	2142403	2142421	CTCCTTACTAGTTCCAGGC		58	NA	
Drosophila melanogaster	50	CG7843	FBgn0033062	FBtr0086021,FBtr0086020,FBtr0086018	2	3	3	166	2R	1969443	1969461	CTCTAAGCGTCCAGAATCG		59	1968904	1969243	GTTCCAAAGGCAATTCTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34211	FBgn0085240	FBtr0112404	3	1	1	91	2R	1934770	1934788	CTGTTCATCTTCTTGGTGC		58	1934843	1934861	GTGGTGGTCTTAAAGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2611	FBgn0032871	FBtr0081387	2	1	1	70	2L	20650645	20650663	AGCTACTATGTGTACGTGC		59	20650697	20650715	CTTCGTATCTCGTCCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst36Fb	FBgn0086682	FBtr0081075	1	1	1	80	2L	18672388	18672406	GAATCCAGCGTATCCAGTC		59	18672273	18672347	TATCGGATCAGTCAAACTACTG		59	NA	
Drosophila melanogaster	50	CG31805	FBgn0051805	FBtr0080958	3	1	1	73	2L	16898441	16898459	TACTGATGACTCTCCCGAG		59	16898279	16898297	GTAAATGGGCGAGATTGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nckx30C	FBgn0028704	FBtr0079926,FBtr0079928,FBtr0079927	1	3	3	118	2L	9733529	9742390	CAACGTGGTATCAATGACAC		59	9733430	9733448	ATGATGTGCAGGATGACAG		59	NA	
Drosophila melanogaster	50	CG33298	FBgn0032120	FBtr0089853,FBtr0089854	1	2	2	80	2L	9517894	9518001	AGCTCATAAGGTTAACAGCA		59	9518041	9518062	TGTCATTCTCCATATCAGTCAG		59	NA	
Drosophila melanogaster	50	Ndae1	FBgn0031899	FBtr0079410,FBtr0079411	1	2	2	90	2L	7229715	7229734	ATACGACTGTGTCTGTACAC		59	7229590	7229665	ATTGTAGGACTCACAAGAATCC		59	NA	
Drosophila melanogaster	50	ifc	FBgn0001941	FBtr0079179	2	1	1	60	2L	5987898	5987916	ACACTTTATCTCGGAGCAC		59	5987940	5987958	ACCGTAGTAGGAGTACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	antdh	FBgn0026268	FBtr0073468	1	1	1	82	X	11062398	11062495	AAGATTACGAGCGTCAGTC		59	11062334	11062352	AGCATTCGATCCTTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089210,FBtr0089215,FBtr0089211,FBtr0089213	2	7	7	83	4	1079778	1079797	ATAACCAGACAACGAATCCT		58	1079118	1079732	ATGTAGAAGAGCTCTTGCC		59	NA	
Drosophila melanogaster	50	CG18428	FBgn0039149	FBtr0084543	3	1	1	61	3R	19935254	19935272	CAATACAGCCTGAAAGGGT		59	19935297	19935382	CAGTGCTATTGGTATGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TotA	FBgn0028396	FBtr0083971	3	1	1	61	3R	16696805	16696910	TCTTCAACTGCTCTTATGTG		57	16696934	16696952	GAATAGCCCATGCATAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17275	FBgn0038836	FBtr0083988	2	1	1	69	3R	16685382	16685400	AGAATCTAAGGAACGGTGG		58	16685273	16685350	AAATCCTTCTTCAATCGCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	2	7	12	159	3R	11122418	11125004	GAAATACGATGAGGTTGCC		58	11126526	11126544	CTTCTCCTCAGAGACTTCC		58	NA	
Drosophila melanogaster	50	CG14355	FBgn0038208	FBtr0082907	3	1	1	206	3R	9976870	9976889	TGCACAGGATATTATGTTCG		57	9976623	9976702	TTCTTAAGTTCACAACACGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13056	FBgn0040794	FBtr0075376	3	1	1	77	3L	16326437	16326526	GTCACAGAGAATGTACTTATCC		58	16326564	16326582	TGATACAATTGCAGATCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34039	FBgn0054039	FBtr0100094	3	1	1	80	3L	14555382	14555494	AATTAACGAACTGACAAGCG		59	14555537	14555555	ATCTTCAGTTCCAAGGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18537	FBgn0034323	FBtr0086759	2	1	1	62	2R	14183671	14183691	GGAAAGTTTGGAATATCAGCG		59	14183715	14183796	CACCATTGTCTCCTCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	LvpD	FBgn0002569	FBtr0088747	3	1	1	158	2R	4342651	4342731	ATTCGCACAAACAAGATCAG		59	4342911	4342929	TCTCTGTGACAGATCTGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)37Bb	FBgn0002021	FBtr0081177	2	1	1	65	2L	19051030	19051110	AGAAGGATGACACGTATGC		59	19050983	19051001	AGAATTGCTGACAAAGACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ca-alpha1D	FBgn0001991	FBtr0090003,FBtr0090006,FBtr0090004,FBtr0090005	2	4	4	80	2L	16174941	16174961	TATGCGATAATTGGCCTAGAG		59	16175003	16175448	TTCCTCGTATTCACCTGTG		58	NA	
Drosophila melanogaster	50	He	FBgn0028430	FBtr0080616	3	1	1	106	2L	13972602	13972799	CCAATACATAGCAACCGTC		58	13972514	13972532	GAAGTGGATTCCGTTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:M2:83F	FBgn0011919	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:N5:42Ae	FBgn0011935	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:Y1:22Fb	FBgn0012017	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	kl-5	FBgn0001315	FBtr0113891	3	1	1	88	YHet	30391	30409	CAAGTGATAGGATGTCAGC		57	30461	30531	TATTCCCTGAAGTTGAGGG		58	NA	
Drosophila melanogaster	50	roX2	FBgn0019660	FBtr0073515	2	1	2	60	X	11473568	11473586	ACGTTACTTCCGAGATCCT		59	11473610	11473628	CTACACTGGTTGGATTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bbx	FBgn0024251	FBtr0100599,FBtr0100598	1	2	2	80	X	21241685	21241706	TTCCTCATATTCTGCAAGAGAC		59	21241746	21241835	TATCTTTGTAATGGCACGGT		59	NA	Nonspecific
Drosophila melanogaster	50	Cyp6v1	FBgn0031126	FBtr0077276	3	1	1	177	X	20531658	20532010	TCACGATCCTAAGTACTGG		57	20532151	20532169	GTGCAAGAAGTAAACGAGG		58	NA	
Drosophila melanogaster	50	CG1812	FBgn0031119	FBtr0077313,FBtr0077312	1	2	2	80	X	20385200	20385384	ATAAGCTTTACATCTCTGGTGG		59	20385425	20385443	AGACTTCCGTCTTTGTGTC		59	NA	
Drosophila melanogaster	50	CG14213	FBgn0031047	FBtr0074744,FBtr0074743	2	2	2	116	X	19533766	19533784	GTACCCTTTCTTGTCGACC		59	19533939	19533957	AGAAAGGTGATCACCTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12203	FBgn0031021	FBtr0074712	3	1	1	131	X	19387098	19387116	CATTGTCCAACATGAACGT		58	19387211	19387229	TGATGCCGTAGTTCTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7423	FBgn0030982	FBtr0074704	1	1	1	126	X	18977109	18977127	GATCGCTTAATGTGAACGA		57	18977001	18977019	TACTTGTCCTTCCTGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34422	FBgn0085451	FBtr0112722	2	1	2	104	X	18749365	18749383	GTACAACTTCCTCGTCGAG		59	18749515	18749533	TTGATGGTATTGTAGGCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7053	FBgn0030960	FBtr0074635	3	1	1	61	X	18686500	18686520	TAAGTTTGACTACTCCACCTC		58	18686543	18686561	TCTTCTTCATGGCGTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6900	FBgn0030958	FBtr0074633	1	1	1	81	X	18679758	18679776	ACTTCAGGTCGTTGTTCTG		59	18679821	18679839	ATCTGGTTGCGTATGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074573,FBtr0074575,FBtr0074574	3	3	6	167	X	18301908	18302558	CCTACCAATGCGAGATGAG		59	18286873	18286892	CCAAGGTGTAGTCCATATCG		59	NA	
Drosophila melanogaster	50	Frq2	FBgn0083228	FBtr0074547,FBtr0074546,FBtr0074548	2	3	3	120	X	18094919	18094937	AAATCTGGACGAGAAGCTG		59	18095255	18095333	CTGTTGTCCTACCATCTGG		59	NA	
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089657,FBtr0089661	1	2	7	102	X	17836890	17836908	AACTACTTCTATCACCGCG		59	17835182	17836825	TGTGTTGACCTAATGTACCT		58	NA	
Drosophila melanogaster	50	CG6847	FBgn0030884	FBtr0074505	3	1	1	114	X	17816189	17816267	ATATCCGAGAAAGACGATGC		59	17816344	17816362	TGTACGACTTGTAGTGCAG		59	NA	
Drosophila melanogaster	50	ppk23	FBgn0030844	FBtr0074491	1	1	3	101	X	17461885	17461903	CCTACACATTCTCCTCCTG		58	17461727	17461820	TAGGCACATTAGGTATGGG		58	NA	
Drosophila melanogaster	50	f	FBgn0000630	FBtr0110991,FBtr0074423,FBtr0074420,FBtr0074422	1	4	6	115	X	17166632	17166651	AATACAACGTAGGACGATCC		59	17166729	17166933	GTTCAAATGGTGGTTGCTG		59	NA	
Drosophila melanogaster	50	CG34326	FBgn0085355	FBtr0112528	1	1	1	63	X	16926402	16926420	ACCCATGTACCATCTACCA		59	16926357	16926375	TCTGTTTGTTCGGATGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	1	7	7	80	X	16273085	16273103	TTTGGTTATGCATGAGCAC		58	16273145	16273233	CAGAAGGCACATTTGTTATCC		59	NA	
Drosophila melanogaster	50	nonA	FBgn0004227	FBtr0074233	3	1	3	65	X	16259644	16259662	TGATTGGAAACAATGCTGC		59	16265362	16265380	TCTCGTTTATAGGACCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3415	FBgn0030731	FBtr0074209	1	1	1	88	X	16166182	16166200	CATTCTCTTCAACGAGCTG		58	16166250	16166566	TATAGCTACCATTATCCTCGC		58	NA	
Drosophila melanogaster	50	vap	FBgn0003969	FBtr0074141,FBtr0074143,FBtr0074142,FBtr0074140	3	4	4	110	X	15897469	15897569	CTATTTAGTTCGCGAAAGTGAC		59	15897299	15897318	ATATAGAAGTCTCCGCACAC		58	NA	
Drosophila melanogaster	50	Aats-arg	FBgn0027093	FBtr0074178	3	1	1	116	X	15737019	15737100	AATCCAAGAAGCGATTCGA		59	15736921	15736940	CATTGCAAATTAGCTCCCAC		59	NA	
Drosophila melanogaster	50	CG32598	FBgn0052598	FBtr0073918	2	1	1	71	X	14210364	14210382	GATTCGCTGAGAAGTTTCG		58	14210311	14210332	TAGGTAAATCGACTCCTTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRNA-capping-enzyme	FBgn0030556	FBtr0073922	1	1	1	101	X	14135154	14135226	GACGGAAGTTATAGGTCCC		58	14135071	14135089	CAAATGTCCCAGAAGTCCT		59	NA	
Drosophila melanogaster	50	CG15756	FBgn0030493	FBtr0073783	3	1	1	184	X	13428829	13428908	CGAGTTCAGATATCAGCTG		57	13429056	13429139	ATAATGTCTGCATGTCCAC		57	NA	
Drosophila melanogaster	50	Jafrac1	FBgn0040309	FBtr0073763,FBtr0073764	2	2	2	99	X	13225457	13225475	TGACAAGTCGATGAAGGTG		59	13225538	13225556	CAAGTTCTGCTTGTCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bap60	FBgn0025463	FBtr0073741	3	1	1	86	X	13052006	13052024	GAGTTCTTCCTAAGCTTCG		57	13051878	13051956	GGTCATCAGCTTCAAATCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1840	FBgn0030351	FBtr0073571	3	1	1	64	X	11782657	11782676	ATTCGTGGGTATATGGTTCG		59	11782762	11782780	TTCCAGTGAATGGAGACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15740	FBgn0030340	FBtr0073605	2	1	1	60	X	11738273	11738291	GCAGACATCGTCTATGGTC		59	11738231	11738249	TACTTTGAGGAGCCAAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dy	FBgn0004511	FBtr0073612	1	1	1	66	X	11666763	11666781	CTACCAGCACAATATGCCA		59	11666604	11666733	GTTCTGGTGATTGTTTCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	rho-4	FBgn0030318	FBtr0073518	2	1	3	81	X	11494345	11498350	GAGATATTTGACAAGCACGAC		59	11498393	11498411	AATAGCCATCCGAGATCAG		58	NA	
Drosophila melanogaster	50	CG1572	FBgn0030309	FBtr0073543,FBtr0073544	3	2	2	81	X	11450009	11450027	ACGTTCTGTTTACTCCTCG		59	11449816	11449967	GGTAAATCAGCTCATAGATCGT		59	NA	
Drosophila melanogaster	50	CG32666	FBgn0052666	FBtr0073507,FBtr0073508	2	2	2	126	X	11445268	11445287	GAGACCTTCCTCAACATCTC		59	11445376	11445818	CATTCATGCGATCGTTTGG		59	NA	
Drosophila melanogaster	50	CG15208	FBgn0030247	FBtr0073383	3	1	1	60	X	10795165	10795186	ATTAGAAGTAGATCGGTGTTGG		59	10795207	10795225	AATCGGACGGAAAGAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9689	FBgn0030159	FBtr0071390	3	1	1	60	X	9776161	9776179	CTAAGTCTGCAGAGGATGG		59	9776202	9776221	AATTTGTTGACCTCACTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7267	FBgn0030079	FBtr0071354	3	1	1	208	X	8965964	8965982	GTAACTTGTCCCTCCATCC		59	8965704	8965723	CCTATCGGTATTCAGGAGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	oc	FBgn0004102	FBtr0089650,FBtr0100341	2	2	2	82	X	8527989	8534405	ATCTAGAGTACAGGTGTGGT		59	8527926	8527944	TCAAGCTATTCGACTGCTG		59	NA	
Drosophila melanogaster	50	slpr	FBgn0030018	FBtr0071184	3	1	1	111	X	8069981	8070059	ATTGGAGATAAGGTCGGTG		58	8069888	8069906	TGTATTCGATCTCATGCGG		59	NA	
Drosophila melanogaster	50	CG2258	FBgn0029997	FBtr0071109,FBtr0071111,FBtr0071110	3	3	3	80	X	7991100	7991207	CTCAATCGAGAGGATGATCC		59	7991039	7991057	GTCGATAAACATTCGCAGC		59	NA	
Drosophila melanogaster	50	RpS14a	FBgn0004403	FBtr0071094	2	1	2	253	X	7828192	7828210	CCATGTCACTGATCTGTCC		59	7828486	7828504	CAATCTTCATGGACGAACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4615	FBgn0029935	FBtr0071020	1	1	1	183	X	6994193	6994211	ATTACTCACGGCATTTGGA		59	6993966	6994046	CATTCTTCGGTGGTTTGTG		59	NA	
Drosophila melanogaster	50	CG4542	FBgn0029906	FBtr0070970	2	1	1	102	X	6716153	6716234	AGTGCCAAGAAACAAAGTC		58	6716300	6716318	TTAAGATGGCCTTCTCGTG		59	NA	
Drosophila melanogaster	50	CG3973	FBgn0029881	FBtr0070948	3	1	1	129	X	6542403	6542541	GATATTCGAGAGGTCACCG		59	6542634	6542652	GTTCTGTAAAGTTGGAGGC		58	NA	
Drosophila melanogaster	50	CG3566	FBgn0029854	FBtr0089870	2	1	2	259	X	6170583	6170602	ACAACAAGGTCTACGATGTG		59	6169140	6169158	GATCACATAGACCAGCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3160	FBgn0029789	FBtr0070847	2	1	1	80	X	5581342	5581361	TATAACACCACGCTCAATCC		59	5581213	5581301	GGAGTACTCATAGCTGATTCG		59	NA	
Drosophila melanogaster	50	Rab-RP4	FBgn0015794	FBtr0070849	2	1	1	114	X	5565046	5565128	GATGTGGTGGAGAAGATCG		59	5564950	5564968	AACAGTAACACGTAGACGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG3249	FBgn0029764	FBtr0070795,FBtr0070796,FBtr0070794	2	3	3	103	X	5309430	5309449	AACTTACCAAAGGCATTGTC		58	5309066	5309367	GATTACATTATTGGGACCTAGG		57	NA	
Drosophila melanogaster	50	CG12688	FBgn0029707	FBtr0070653	2	1	1	71	X	4275984	4276002	AGACCAAGAAGATCCAAGC		59	4277107	4277125	TCGGAGTGTCCTCTAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	cib	FBgn0026084	FBtr0070640	2	1	3	64	X	4003988	4004006	GAACAACTTGAAGCACACG		59	4004033	4004204	CTCCTTCTCCTTCCTTATCG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12535	FBgn0029657	FBtr0070534,FBtr0070535	3	2	2	62	X	3287188	3287206	AAGTTTGGTCATGTCCCTG		59	3287144	3287162	TTAGGACATAGAAGTGCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Klp3A	FBgn0011606	FBtr0070448	2	1	1	80	X	2494440	2494458	CGAGACAGTGGTACTAAGC		59	2494295	2494396	TCGGATTGAATCCTCTTGG		59	NA	
Drosophila melanogaster	50	CG12496	FBgn0040385	FBtr0070462	1	1	1	65	X	2304589	2304607	GATATCCGGAATGTCACCC		59	2304542	2304560	CACACTCTGTACCCTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ph-d	FBgn0004860	FBtr0112843,FBtr0070433	1	2	2	70	X	2011730	2011748	ATATGCAGACAAAGACGTC		57	2011615	2011633	TTAGCTTGATGTCCTCCTG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG32810	FBgn0025394	FBtr0070260	2	1	1	145	X	1408638	1408656	TGAGTTCTACAACGTGACG		59	1408823	1408905	ACAGCGTTGAGATCATCTG		59	NA	
Drosophila melanogaster	50	CG3056	FBgn0024987	FBtr0070215,FBtr0070214	2	2	2	106	X	1265710	1265728	TCAATTACTTGCCACAGGA		58	1265798	1265956	ATATCCGGTCTTGAAGTCG		58	NA	
Drosophila melanogaster	50	CG41586	FBgn0085710	FBtr0114159	1	1	1	60	U	7473446	7473464	TGTCAAGCGACCATATGAG		59	7473488	7473506	GGCTCATCTATATCCAGGT		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41010	FBgn0085552	FBtr0113965	3	1	1	133	U	6449634	6449654	GGAAACTATCAAGGAGTACTG		57	6449521	6449539	TTGTGGTCATAATGCTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41518	FBgn0085663	FBtr0114108	2	1	1	122	U	2350212	2350230	CTTGATCCGCACAAATAGC		59	2334333	2349621	TGTATTGACCTAAAGGCCAG		59	NA	
Drosophila melanogaster	50	CG40339	FBgn0058339	FBtr0113867	1	1	2	136	U	1062290	1062308	TACCCAATGGTGATTGAGG		58	1062853	1062871	TGCCTTTCGTTATCTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33521	FBgn0053521	FBtr0091471,FBtr0091472	1	2	4	191	4	1207180	1207198	TTCGGAAATGGATTACCCT		58	1208238	1208378	CTTCTCAGGTATTGTAGATCG		57	NA	
Drosophila melanogaster	50	CaMKII	FBgn0004624	FBtr0089217,FBtr0089218,FBtr0100148,FBtr0089219,FBtr0100146,FBtr0100147	1	6	6	80	4	1068496	1068515	GGATATCTGTCTCCTGAGGT		59	1068342	1068456	GTAAAGAATAACTCCACATGCC		59	NA	
Drosophila melanogaster	50	CG11148	FBgn0039936	FBtr0089250,FBtr0089249,FBtr0089248	1	3	3	81	4	880999	881075	AAAGTTGATGTACCCACGT		59	880936	880956	GGTATATTCGGACATAGTCCT		58	NA	
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	2	8	8	80	4	671647	672939	ACAGCACAGATTGATGGTC		59	671585	671604	GTTCAAATACGGGTGAAAGC		59	NA	
Drosophila melanogaster	50	CG34013	FBgn0054013	FBtr0100068	3	1	1	81	4	279988	280082	ATGATCAGAATCCTCGCTC		58	280127	280145	ATAGTAACGTTCCGTTTGC		58	NA	
Drosophila melanogaster	50	Ank	FBgn0011747	FBtr0089172,FBtr0089171,FBtr0089174	1	3	4	80	4	149994	150012	CAAGAAGTGAAACCTGTGC		59	144503	149950	AAATGGTTGCGTCATTCTG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-301	FBgn0083039	FBtr0113583	3	1	1	70	3R	16400694	16400712	AAACTGTGTCGATTACCGT		59	16400746	16400764	CATGTCTGAGTCTTACGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	2	14	14	109	3R	27690344	27690863	AAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	Ef1alpha100E	FBgn0000557	FBtr0085834,FBtr0085835,FBtr0085833,FBtr0085832	3	4	4	189	3R	27567379	27567397	TGGTCACCGAAGTAAAGTC		59	27567550	27567645	TTGAGCACAATCACCTGAG		59	NA	
Drosophila melanogaster	50	Med	FBgn0011655	FBtr0085815	2	1	2	147	3R	27438273	27438291	TGAAGGACGAATACTCAGC		59	27438402	27438618	GCATCGCCAACATATTCAG		59	NA	
Drosophila melanogaster	50	CG15553	FBgn0039817	FBtr0089392	1	1	1	80	3R	26925153	26925171	TCTTTCGTTCCATTCAGGG		59	26925032	26925109	CAAACAGCTTACCAGTGTC		58	NA	
Drosophila melanogaster	50	CG9733	FBgn0039759	FBtr0085638	2	1	1	188	3R	26071289	26071307	CGATATGTCCTCACAGCTG		59	26070296	26070314	GCTGTATCTTTCGTGAACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1983	FBgn0039751	FBtr0085574	3	1	1	144	3R	26002802	26002906	TCAACAAGATCCTTTCTGTG		57	26002677	26002696	CTAGTGTTGATCTGGATGAG		57	NA	
Drosophila melanogaster	50	trp	FBgn0003861	FBtr0085513	1	1	1	102	3R	25743588	25743608	GGATCTTTGGAACATAGTGGA		59	25743449	25743524	GAACCAGAGATCACGATGG		59	NA	
Drosophila melanogaster	50	CG7609	FBgn0027518	FBtr0085543,FBtr0085542	1	2	2	105	3R	25569982	25570000	ATCAAGGTGTGGAACATGG		59	25569833	25569916	CGATGTGATAAGTTCTTTCTGG		59	NA	
Drosophila melanogaster	50	CG2010	FBgn0039667	FBtr0085428,FBtr0085427	2	2	2	119	3R	25323843	25323861	TAAGTTTATACAGCGCCAG		57	25323944	25324030	ACAATGATCTTGCAGTTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	1	8	8	120	3R	24962131	24962214	CCAATGATAAGCCCTACTCC		59	24962294	24962315	CCCATGAACATATAGGTTTCAC		58	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	2	8	8	121	3R	24962130	24962213	ACCAATGATAAGCCCTACTC		58	24962294	24962315	CCCATGAACATATAGGTTTCAC		58	NA	
Drosophila melanogaster	50	Ppn	FBgn0003137	FBtr0085295,FBtr0085294	1	2	2	93	3R	24351202	24351220	TTCTACTACAGCGGTTGTG		59	24351018	24351146	AGATGTCCTTAGCAACTTGG		59	NA	
Drosophila melanogaster	50	CG34362	FBgn0085391	FBtr0112582,FBtr0112583	2	2	2	157	3R	23903909	23903927	AAACCTTGAAGTCGAAGGG		59	23904345	23908633	CTTGATGTTCTCTTTACTCGC		59	NA	
Drosophila melanogaster	50	Gr98c	FBgn0046886	FBtr0085187	3	1	1	92	3R	23371394	23371463	TTATTTGGAGGGATGCTGG		59	23371518	23371537	TTGTCTGTAGCCGATTAGAG		58	NA	
Drosophila melanogaster	50	CG5938	FBgn0046247	FBtr0113355,FBtr0085159,FBtr0085160	1	3	5	126	3R	23101495	23102020	GCAACATGACGGTATTTGG		59	23102110	23102128	GATTTCTTCAGCACTCCGT		59	NA	
Drosophila melanogaster	50	gb	FBgn0039487	FBtr0085132	1	1	1	118	3R	22935942	22935960	TACATCTCCCTACCTCTGG		59	22935591	22935860	TTATCGCCAAAGGTCACAG		59	NA	
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0114372	1	1	12	105	3R	22892470	22892488	AGTATCACAGCCTGATCCA		59	22892166	22892339	CGATACTTGGTATCCGATGG		59	NA	
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100338,FBtr0100334,FBtr0085092	1	3	9	134	3R	22699712	22699802	AACAGCTACCCATATACGG		58	22699596	22699614	ATATTTGCTGTTGGCACTG		58	NA	Nonspecific
Drosophila melanogaster	50	Hex-t2	FBgn0042710	FBtr0085011	1	1	1	60	3R	22277324	22277342	ATAATCAACTGCGAGTGGG		59	22277366	22277384	AAGTTCGAACGAACTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fur1	FBgn0004509	FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986	3	5	6	197	3R	21182169	21182187	GAGACGAGGAGACATTCAG		59	21180028	21181955	GTGATTTGTGCCATATAGCG		59	NA	
Drosophila melanogaster	50	CG31087	FBgn0051087	FBtr0084855	3	1	1	80	3R	21137039	21137117	GGTTTGGCTGCTTATATGG		58	21136977	21136995	GCTTTCCAGATTAGCATCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG10550	FBgn0039321	FBtr0084857,FBtr0084858	2	2	3	227	3R	21133346	21133425	ATATACTGCTGAAGGATGGC		59	21133138	21133156	TAATCAATTCGTCAGTGGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG10420	FBgn0039296	FBtr0084870	3	1	1	60	3R	21060516	21060535	CCATCAGATAGACAATGCCT		59	21060475	21060495	CAGTAGTACATCATCCAATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13663	FBgn0039291	FBtr0084873	1	1	1	60	3R	21040537	21040555	ACAGATCATCACCACAAGG		59	21040495	21040513	GCAGATAGACAGTCCAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11920	FBgn0039274	FBtr0084769	3	1	1	60	3R	20901486	20901505	ATGAACAGAGGAAACTACCA		58	20901527	20901546	TTACATTATTGGCACGACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9996	FBgn0039273	FBtr0113285	3	1	1	92	3R	20899625	20899897	TAACGAATTGCAGACTGGG		59	20899551	20899572	GCTGACTTAATCATAACCAGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11791	FBgn0039266	FBtr0113283,FBtr0084762	1	2	3	60	3R	20877255	20877274	CACATCTACAATTGCCTGAG		58	20878221	20878241	CCTTAAAGCTGCTCTTATCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31110	FBgn0051110	FBtr0084792	2	1	1	80	3R	20869767	20869841	CTTTCCGGAGTGTAAATGG		58	20869705	20869723	TTGACTAGATCGATGACGG		58	NA	
Drosophila melanogaster	50	nAcRalpha-96Aa	FBgn0000036	FBtr0084619	1	1	1	98	3R	20247488	20247506	AACTACAATCGCCTCATCC		59	20240605	20247429	CTTTAGATTCACATCGATCAGC		59	NA	
Drosophila melanogaster	50	CG5746	FBgn0039186	FBtr0084631,FBtr0084630	1	2	2	115	3R	20172702	20172814	TCAGAACTACAACTCGACG		59	20172605	20172623	GTCCGGTAGCATTGTAGTC		59	NA	
Drosophila melanogaster	50	BRWD3	FBgn0011785	FBtr0084604	1	1	1	85	3R	20146560	20146578	CTTAAGGGACTACTGCACC		59	20146627	20146706	GAACGCGATCTAAGTTGTG		58	NA	
Drosophila melanogaster	50	Hmgcr	FBgn0001205	FBtr0084451,FBtr0084450	2	2	2	70	3R	19574394	19574476	TATCATCAAATGGCTGACC		57	19574510	19574528	TAACTACCAAGGCGATGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10300	FBgn0039107	FBtr0084445	2	1	1	76	3R	19538174	19538261	AAACTGCCTTTCAAGTTCG		58	19538301	19538319	ATGGTCATCACATCTCTGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG10254	FBgn0027512	FBtr0084476,FBtr0084477	2	2	2	117	3R	19516918	19516936	GGTAATAGAAGATCCGCCG		59	19516756	19516840	GCCAGAATCATTCTTAGTACGA		59	NA	
Drosophila melanogaster	50	Ir	FBgn0039061	FBtr0113273,FBtr0084371	3	2	2	168	3R	19009810	19009828	TGATAGGAACAGTCCACTG		58	19010018	19010036	CACATTCACGAAACGATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7059	FBgn0038957	FBtr0084221,FBtr0084219,FBtr0084220	2	3	3	139	3R	18217576	18217650	CACATTGAGGGAATCTCCA		58	18217751	18217771	CGCCTAATATACTCCTGATCC		59	NA	
Drosophila melanogaster	50	GABA-B-R2	FBgn0027575	FBtr0084168	2	1	2	174	3R	17597551	17597631	CACCACAGAAGTTACCGAG		59	17597338	17597356	CATCATAGTTGGAGCAGGG		59	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0110937	1	1	12	157	3R	17036279	17036297	CTTCTACTCGAATCATGCG		58	17036418	17036519	CGTCCTCTTCTTTCTTGAG		57	NA	
Drosophila melanogaster	50	CG4462	FBgn0038752	FBtr0083850	3	1	1	178	3R	15748415	15748433	GTACCGAACACTATTGCCA		59	15748025	15748101	AGATCAGCATCCATTGAGTC		59	NA	
Drosophila melanogaster	50	CG4465	FBgn0038750	FBtr0083851	1	1	1	65	3R	15743360	15743378	ATCTCCTCAAACTCCACAC		58	15743313	15743331	GTGATGACATCGTCATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3517	FBgn0038706	FBtr0083770	3	1	1	60	3R	15250575	15250593	ATGATCATCTGTGGACTGC		59	15250533	15250553	CATATGTGATAATGTCCACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5316	FBgn0038704	FBtr0083759	3	1	3	61	3R	15229790	15229808	CCAAGAAGCATTGGAACTC		58	15229831	15229851	AATAGCCTTACTTGTGTAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31404	FBgn0051404	FBtr0083774	2	1	1	60	3R	15201058	15201076	CTTCGCAAAGATAACGCTC		59	15201016	15201035	AGTAGGTGAATATACCCGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5451	FBgn0038666	FBtr0083721	3	1	1	152	3R	14806342	14806416	AACGTTACAGGAGGAAACG		59	14806208	14806227	TGCTCGTATAGATTGAGCAG		59	NA	
Drosophila melanogaster	50	Rh2	FBgn0003248	FBtr0083697	3	1	1	128	3R	14726195	14726213	TGTCATTTGCTACTTCGGA		58	14726305	14726405	TACTTGGGATGGCTAATGC		59	NA	
Drosophila melanogaster	50	14-3-3epsilon	FBgn0020238	FBtr0083567,FBtr0083565,FBtr0083566,FBtr0083568	2	4	4	80	3R	14073560	14073579	ATATTGCCATGAACGATCTG		58	14073621	14073708	TCTCATAGTAGAACACCGAG		57	NA	
Drosophila melanogaster	50	CG7156	FBgn0038588	FBtr0083607	3	1	2	135	3R	14067506	14067524	CAAGAGTCTCCAACTACCC		58	14067312	14067331	TATAGCTTCTTAAGTGGCGA		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7785	FBgn0038564	FBtr0083539	3	1	1	95	3R	13848386	13848461	TCATTTATGTGGGCAATGG		58	13848520	13848538	ACTGTTCCAATAGAATGCG		57	NA	
Drosophila melanogaster	50	CG17283	FBgn0038505	FBtr0083437	3	1	1	60	3R	13234381	13234399	GGATATCGATCCATAGCGG		59	13234423	13234441	CCTCCGAGCACATATTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cctgamma	FBgn0015019	FBtr0083338,FBtr0083337	2	2	2	85	3R	12474348	12474433	CATTAAACGCTATGCCAAGG		59	12474481	12474499	CTTTGTTGATCATCACGCC		59	NA	
Drosophila melanogaster	50	Mst89B	FBgn0020399	FBtr0083260	3	1	1	135	3R	12093123	12093141	TTTGGATGATCTTCTCCGC		59	12093315	12093333	GTAGCAAAGTGGTAAACGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Acyp2	FBgn0038363	FBtr0083174	1	1	1	164	3R	11618599	11618617	TTCGAGATCTTTGGACGAG		59	11618867	11618944	CAGCCAATGTTTCATTTCCA		59	NA	Nonspecific
Drosophila melanogaster	50	CG31302	FBgn0051302	FBtr0083097,FBtr0083096	3	2	3	132	3R	11209087	11209153	GCTACTCAAGCCTCTTGAG		59	11209249	11209267	GATATGGATGATAGGCCGC		59	NA	
Drosophila melanogaster	50	CG6934	FBgn0038289	FBtr0083039	3	1	1	66	3R	10937536	10937554	ATCTGGATGTACGGAAGTG		58	10937488	10937507	AGTTTCATTTGCTAACCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL10Aa	FBgn0038281	FBtr0083024	1	1	1	60	3R	10863378	10863396	AGCCATAGGAGTTGATTGC		59	10863420	10863438	CTTGGGATCTTTGTTCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3731	FBgn0038271	FBtr0083000,FBtr0083001	1	2	2	80	3R	10717532	10717550	CAACACATGCTACAAGGAC		58	10717594	10717686	TTGAAGAGCATATCCTCGC		59	NA	
Drosophila melanogaster	50	CG33330	FBgn0053330	FBtr0082990	2	1	1	61	3R	10620682	10620700	CATGCAGTCCTTGATTTCC		58	10620725	10620743	GATCTGGTTCCGATAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kif19A	FBgn0038205	FBtr0082912,FBtr0082911	1	2	2	80	3R	9939295	9939315	GCATATGATTATCTCCCACTG		58	9939173	9939253	CCTTCTGATTCAATGTCGT		57	NA	
Drosophila melanogaster	50	Art9	FBgn0038188	FBtr0082879	1	1	1	84	3R	9768735	9768756	GAAGGTCGATATAATAGTGTCC		57	9768613	9768631	TTCTCTGGCAAAGATCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	yellow-e	FBgn0041711	FBtr0082757	1	1	1	82	3R	9236552	9236570	GTTTGACTTTCGATGAGCG		59	9236111	9236129	GACATTCTTATGCACGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8795	FBgn0038139	FBtr0100149,FBtr0082774,FBtr0082773	2	3	3	128	3R	9157366	9157632	TTTGTTATGCTCAGGAATGC		58	9157257	9157275	GTTAGAACTGTCGCATTGG		58	NA	
Drosophila melanogaster	50	Osi22	FBgn0038133	FBtr0082738	1	1	1	60	3R	9117014	9117034	GACATGAGCAACGATATAGTG		58	9117053	9117074	CAATGATCTCCTTGAGATTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	beat-Vb	FBgn0038092	FBtr0082684	3	1	1	95	3R	8759112	8759133	CTTTAATGACTTCGTAGAGGTC		58	8759188	8759266	ACCAGAGAAACCTTTATCCC		59	NA	
Drosophila melanogaster	50	beat-Vc	FBgn0038084	FBtr0082658	3	1	1	64	3R	8578160	8578178	TCAAGCTGATCGATCAGAC		59	8573260	8573279	AATGAACGGATCGAATTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Men	FBgn0002719	FBtr0082660,FBtr0082661	3	2	2	179	3R	8539997	8540015	TCTTGGTATTGCCAACCTG		59	8539780	8539798	AAAGTATCGATGGGTTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	Men	FBgn0002719	FBtr0082660,FBtr0082661	2	2	2	179	3R	8539998	8540016	CTCTTGGTATTGCCAACCT		59	8539781	8539799	AAGTATCGATGGGTTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14394	FBgn0038079	FBtr0114499,FBtr0113228,FBtr0114500	1	3	6	65	3R	8522003	8522021	TCTGTCCATAGTCATGCAG		58	8522474	8522492	TTTATGTTGAGACTCCCGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14714	FBgn0037929	FBtr0082422,FBtr0110810,FBtr0113222	3	3	3	63	3R	7498478	7498496	CAATCATAGCAGCTATGGC		58	7498523	7498541	ATAGCGATCCTTGACTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14708	FBgn0037910	FBtr0082409	2	1	1	61	3R	7380010	7380030	TCGAGTCTCTACAATATCGAC		58	7380053	7380071	CTATCCAGATTCACGGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pug	FBgn0020385	FBtr0100144,FBtr0082266,FBtr0082264,FBtr0082265	1	4	4	122	3R	6525707	6525725	GACTCCAACGTTTACATCC		58	6525808	6525952	CAGATCGTTTATCTTATCGAGC		58	NA	
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0082255,FBtr0082256	3	2	6	110	3R	6359728	6387646	GATACATCAGACCCTGATGG		59	6359637	6359655	ACTACCGAGGAAGACTGAG		59	NA	
Drosophila melanogaster	50	Bruce	FBgn0037808	FBtr0082239	1	1	1	80	3R	6144747	6144766	GATTACTCTCAACGACAAGG		57	6144629	6144706	GGAATAGTGGTTTCTTCAAGG		58	NA	
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210	2	5	8	81	3R	5834566	5835033	CTACGAAGGTTCAAACCGA		59	5834503	5834521	GAGTCGGTGGATATCTCAG		58	NA	
Drosophila melanogaster	50	bocksbeutel	FBgn0037719	FBtr0082105,FBtr0100537	3	2	2	61	3R	5415792	5415810	TTAGTGGATCCAATCTGGC		59	5415749	5415767	TAGAGTGTTTACTGCGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kap-alpha3	FBgn0027338	FBtr0082108,FBtr0082106,FBtr0082107	1	3	3	116	3R	5402864	5402942	GAAAGACCAGGATGAAATGC		59	5402767	5402785	GTGTTCGAGTCCAAATTGG		59	NA	
Drosophila melanogaster	50	CG11980	FBgn0037652	FBtr0081962,FBtr0081963	1	2	3	101	3R	4830105	4830125	CCAAATAACCTTCAAGGAGAC		58	4830244	4830263	TAGTGACAGTAGACCAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11755	FBgn0037611	FBtr0081903	2	1	1	60	3R	4504194	4504214	TTGCTCTAGGAGTCATATACC		58	4504236	4504254	GGTGGTTGGAAAGGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17944	FBgn0037500	FBtr0081590,FBtr0081589	2	2	2	63	3R	3187264	3187282	GATCCGAGATCATTCTCCC		58	3187219	3187240	CGTCGTAAATGGACTTTATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ftz	FBgn0001077	FBtr0081625	3	1	1	60	3R	2690209	2690227	TACGATAATTCAGGCAGCA		58	2690248	2690269	GATAGTAGCCCTGATAATTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1021	FBgn0037443	FBtr0081731,FBtr0081732	2	2	2	173	3R	2216935	2217034	CAGAGACGATAATGTCAACGA		59	2216715	2216733	TGATTCTGCAAGTCCTTGG		59	NA	
Drosophila melanogaster	50	exba	FBgn0037346	FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745	3	7	7	85	3R	1423978	1423999	GGTTCTATTATTCGTAAAGGGC		58	1423648	1423932	CAGAACCGTTGACTAACCA		59	NA	
Drosophila melanogaster	50	CG14669	FBgn0037326	FBtr0078679	1	1	1	170	3R	1280551	1280571	TCAGATCTTGGACAGTTTCAG		59	1281082	1281181	TAGTTATATTGCGCCGAGC		59	NA	InUTR
Drosophila melanogaster	50	7B2	FBgn0041707	FBtr0078789,FBtr0100112	1	2	2	69	3R	1203302	1203320	CAGGATAGTGCTGATGTGG		59	1203353	1203371	TCTGCATGATGTACTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED31	FBgn0037262	FBtr0078856,FBtr0078857	1	2	2	80	3R	468366	468479	CCAACTATCTAAACTTCCTTGC		59	468519	468538	AGTACTGCAGATACTTCAGG		58	NA	
Drosophila melanogaster	50	CG1090	FBgn0037238	FBtr0078912	1	1	2	109	3R	189422	189442	CTTATCCTCCACATACTGGTG		59	189513	189951	GATAGCTTTAGCTCCTCGC		59	NA	
Drosophila melanogaster	50	snoRNA:Or-CD11	FBgn0086082	FBtr0114358	1	1	1	61	3L	20446836	20446854	AATGTGAAGAGCATTCCAC		58	20446879	20446897	ACGGAATAGTCAAGCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-3327a	FBgn0082967	FBtr0113611	3	1	1	92	3L	13035887	13035905	TTTGCGTGTAGAATAGTGC		58	13035960	13035979	AATCAACTGGGATTTGTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40057	FBgn0058057	FBtr0111159	1	1	2	125	3L	24518909	24518930	CGAATGCAATGGATATGATGTC		59	24518394	24518823	GATCTATGAGTGTGGCGAC		59	NA	
Drosophila melanogaster	50	CG11523	FBgn0037156	FBtr0078511	2	1	1	60	3L	22259529	22259547	TTGCATCTCATCCAAACTG		58	22259487	22259505	GATAGTCCGGATGTTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mub	FBgn0014362	FBtr0078469,FBtr0111017,FBtr0078468,FBtr0078470	1	4	4	80	3L	21907919	21907998	GATTTCGTGAAGAGTCTGGT		59	21908041	21908059	TTGTACCAGACACAGTCAC		59	NA	
Drosophila melanogaster	50	CG14572	FBgn0037128	FBtr0078434	2	1	1	70	3L	21734694	21734712	CGTTATCCTTTGCCTTTGG		59	21734746	21734764	CATACCGGTTGATCCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6014	FBgn0027542	FBtr0078346	3	1	1	81	3L	21404666	21412712	TCTTAACCAATAGCCCGTC		59	21412756	21412775	GCTGGTTGTATTATGCTCTG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Eip78C	FBgn0004865	FBtr0078307,FBtr0078306	2	2	3	92	3L	21224332	21224350	CTGGTCATCAGACTGAACC		59	21224406	21256109	ACCATAACGTACGGAATCG		59	NA	
Drosophila melanogaster	50	eRF1	FBgn0036974	FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177	1	6	6	80	3L	20344766	20344787	GGAGATTATCACGGATAAGTCC		59	20344828	20345922	TTGTAGCGTAAGATACCGC		59	NA	
Drosophila melanogaster	50	CG6680	FBgn0036968	FBtr0074842,FBtr0074841	1	2	2	80	3L	20312175	20312194	GCCACAGGATGTATATGGAG		59	20312236	20312311	TTGTTGAAGGGAAACTTCCA		59	NA	
Drosophila melanogaster	50	CG8004	FBgn0036920	FBtr0074915	3	1	1	67	3L	19921025	19921043	TCTACAAAGAGGTCACAGC		58	19920976	19920994	GTTCTGCATGTGATTGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9372	FBgn0036891	FBtr0074945	1	1	1	90	3L	19600844	19600863	AGATTGGTCGGATAGAAACG		59	19600916	19601111	CAGGTTAACCTCCATGAGG		59	NA	
Drosophila melanogaster	50	rept	FBgn0040075	FBtr0074988	1	1	1	60	3L	19249613	19249631	CACTAACTATCGCAGTCCG		59	19249653	19249673	TATGATGATCATGCGATCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6865	FBgn0036817	FBtr0075060	2	1	1	189	3L	18858236	18858255	AGAGCAATACCATTGGAGAG		59	18858469	18858487	GACACGTATTTACTGACGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32188	FBgn0052188	FBtr0075164	1	1	1	69	3L	17826549	17826567	CAACAACTGATTCGTCCAC		59	17826498	17826516	TTCTTCTTTGTGGAGGCAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6479	FBgn0036710	FBtr0075246,FBtr0075245	3	2	2	93	3L	17330908	17330927	CTCTTGCATAGCTGACTACC		59	17330775	17330855	GAATATTATAGCTGCATCGGTG		59	NA	
Drosophila melanogaster	50	l(3)73Ah	FBgn0002283	FBtr0075311	1	1	1	81	3L	16582261	16582354	AACTGCAAGAAGATGAATCG		58	16582398	16582416	TTCTGCGTGATATCCTTGG		59	NA	
Drosophila melanogaster	50	CG4729	FBgn0036623	FBtr0075417,FBtr0075419,FBtr0075418	1	3	4	81	3L	16377075	16377093	ATCAAGCCCATAGACAAGC		59	16376952	16377031	ACACGAAGATAAGTTGGGAG		59	NA	
Drosophila melanogaster	50	CG13060	FBgn0036606	FBtr0075370	1	1	1	66	3L	16313032	16313110	AAATTTATCGGCGTCATCG		58	16313140	16313158	CATGGTGAGTCTCGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33687	FBgn0053687	FBtr0091667	2	1	1	99	3L	16191403	16191421	TCAACCTTCATCAATGCCT		59	16191554	16191572	GATATCGCAAGAATGCCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13445	FBgn0036532	FBtr0075503	3	1	1	91	3L	15802892	15802910	TCATCGAGTATCCTGAAGG		57	15802965	15802983	TTAAGATTCATTGGAGGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	comm	FBgn0010105	FBtr0075579	3	1	1	60	3L	15715951	15715969	CATCCTCTTCGGAATCCAG		59	15715909	15715927	GGCATGTTAATGCAAATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12355	FBgn0040805	FBtr0075606,FBtr0113333	3	2	2	176	3L	15486579	15486598	CGCCTTATCTATTGACTGTG		58	15486284	15486303	TATAGATGACACGGAATCGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG32147	FBgn0047178	FBtr0075647	3	1	1	60	3L	15136486	15136507	GGCTATATCTATCTGAAATCGC		58	15136447	15136465	GTACATGGACAAACAGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10006	FBgn0036461	FBtr0075628,FBtr0113171	2	2	2	88	3L	14989466	14989485	GATCGATAATGGAGTTTGCA		58	14989536	14989611	CATAGATCCAAGCGTACCA		58	NA	
Drosophila melanogaster	50	CG9425	FBgn0036451	FBtr0075692	2	1	2	278	3L	14788839	14788983	TACAAGGATCATCCTGCTG		58	14789223	14789243	CTGGTATCATTCAGTTTACCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13479	FBgn0040811	FBtr0075721	2	1	1	285	3L	14561147	14561167	CCATATTTCATCAGCACTTGG		59	14560882	14560900	TACAGAACCTTCTGCACTC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11251	FBgn0036346	FBtr0075891	3	1	1	60	3L	13082076	13082094	CTTATTCACCGCCTATCCC		59	13082034	13082054	TTCCCGTTAGTATAATGTCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS12	FBgn0014027	FBtr0075878,FBtr0075880	2	2	2	60	3L	13016618	13016842	GTTGATGTTGATGTTCCCT		57	13016866	13016884	CAGTGTTAATGTCCATGGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG11008	FBgn0036315	FBtr0075932	1	1	1	60	3L	12814311	12814330	AATACTCCAACCACAATGCT		59	12814353	12814371	AATCTCCTTCAACTGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ptp69D	FBgn0014007	FBtr0075913	3	1	2	138	3L	12731790	12731876	AGAGATTCTTTGAGCAGGG		58	12731978	12731996	TATGTCGGTTCTTGTAGGC		59	NA	
Drosophila melanogaster	50	Ncc69	FBgn0036279	FBtr0075987,FBtr0075988	3	2	2	93	3L	12362374	12363044	AAATTGAGAGTTTACGCGC		59	12362299	12362317	AATCGATCCGGAATTTCGA		59	NA	
Drosophila melanogaster	50	CG9760	FBgn0036259	FBtr0076021	1	1	1	136	3L	12151110	12151128	ACTCCATCGGGATATTGTG		58	12150942	12150960	ATTGTGCACATTTCCACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6793	FBgn0036242	FBtr0076051	2	1	1	60	3L	12035673	12035691	AGAAACTTCGAATCGGAGG		59	12035715	12035733	ATGCAGAGATTTCGACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32094	FBgn0052094	FBtr0076081	2	1	1	83	3L	11806613	11806632	TAACACTCCAGGAAGTTACC		58	11806486	11806504	AACAGACAAGTGTTGTGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Or67c	FBgn0036078	FBtr0076300	1	1	1	90	3L	10236594	10236613	GTTGCTAATCATGAGGAGTC		58	10236471	10236542	GCTGATGACCTTCATATAGG		57	NA	
Drosophila melanogaster	50	CG33926	FBgn0053926	FBtr0091930	2	1	1	78	3L	9436443	9436461	TCCTCCAATATTAGGGCCA		59	9438840	9438858	CAGTGATCTCCATGTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rdl	FBgn0004244	FBtr0076536	1	1	3	91	3L	9156062	9161908	GTTCTAATGGACTTCACATTGG		59	9155992	9156010	AGTGTTTCTACACCAGGTC		58	NA	
Drosophila melanogaster	50	CG5026	FBgn0035945	FBtr0076516,FBtr0076515	3	2	2	122	3L	8963883	8963901	GTCTTATTTGAACCGGCCT		59	8963985	8964058	AAATAGAGATCACTCCACAGC		59	NA	
Drosophila melanogaster	50	Tsp66E	FBgn0035936	FBtr0076507,FBtr0076508,FBtr0076506	2	3	3	85	3L	8919886	8921125	CGCATTGAGCAATTTACAC		57	8921174	8921192	CTCATGAAGAACATGACGG		58	NA	
Drosophila melanogaster	50	CG13306	FBgn0040828	FBtr0076592	2	1	1	66	3L	8742520	8742538	ATGGTTACATGGGTTTCGG		59	8742472	8742490	CATTGGAAGTGATACGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Prm	FBgn0003149	FBtr0076593,FBtr0076594	2	2	4	143	3L	8732791	8732809	ATCATCCTGTACGAGACCA		59	8732581	8732686	CTCATGAAGATCATCTCCCAG		59	NA	
Drosophila melanogaster	50	Cp15	FBgn0000355	FBtr0076572	1	1	1	154	3L	8721893	8721911	GAGGGTAATGGAGGAAGTG		59	8722029	8722047	AATTAGTAAGCACGTTGGC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	se	FBgn0086348	FBtr0076623	1	1	1	96	3L	8514299	8514320	GTGGAGAGGATTATAACTACGA		58	8514434	8514452	ATGTAGAAGGCCATCACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ImpE1	FBgn0001253	FBtr0076606	2	1	2	166	3L	8373010	8373028	AATAGCAGTTGTCTGGAGG		58	8378901	8378919	AAGAGATTCGGGATGAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Idh	FBgn0001248	FBtr0076671,FBtr0114548,FBtr0114547,FBtr0076668,FBtr0076673,FBtr0076669,FBtr0114549,FBtr0076667,FBtr0076670	1	9	9	60	3L	8350349	8350367	TCTGAAGAAGTACGATGGA		57	8350307	8350325	GTACTGCTTGTTGTACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8605	FBgn0035762	FBtr0076838	1	1	1	80	3L	7317837	7317913	GACTACAATCTCAGGCTGG		59	7317956	7317975	AATCTGTTCTATGTCCACCG		59	NA	
Drosophila melanogaster	50	unc-13-4A	FBgn0035756	FBtr0076887	1	1	1	80	3L	7262829	7262847	CGTGGTCATTGAACTACTG		58	7262644	7262786	TTAAGAGTACGCTTATGCAC		57	NA	
Drosophila melanogaster	50	msl-3	FBgn0002775	FBtr0076926,FBtr0076927	2	2	2	87	3L	7117435	7117511	GTTATGTCCACTGTCTGCA		59	7117366	7117385	TATACAGCAAGTGGTCATCC		59	NA	
Drosophila melanogaster	50	CG33171	FBgn0053171	FBtr0089837	3	1	2	163	3L	7042667	7043281	ATACGAAACGTGGTATCCG		59	7043785	7044349	TCTGTACCCTGGATGAGAG		59	NA	
Drosophila melanogaster	50	Jon65Aiii	FBgn0035665	FBtr0077041	2	1	1	60	3L	6044354	6044372	CCGCCCTTATTAACAAGGT		59	6044396	6044414	CCAGTGTAAGTGGAGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PGRP-LD	FBgn0035635	FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577	3	4	4	107	3L	5775936	5776021	TGCATAAGCTGGAAAGGTC		59	5776092	5776110	GATACTGGCTCCGATAGTG		59	NA	Nonspecific
Drosophila melanogaster	50	mthl2	FBgn0035623	FBtr0077088,FBtr0077087	1	2	2	80	3L	5599497	5599577	TCGGACAAACAGAATTACAC		58	5599617	5599638	GTAGGAGAATATCTCAAAGCTC		57	NA	
Drosophila melanogaster	50	CG34266	FBgn0085295	FBtr0112461	1	1	1	64	3L	4677910	4677928	AATGCTCTACGTCAAGGTG		59	4677956	4677974	TTTGCTCGGCTATAAGCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	pfk	FBgn0035405	FBtr0073028,FBtr0073027	3	2	2	60	3L	3160956	3160974	ACAAATGATCGACGAGGAG		59	3160998	3161016	AGTACCAGCTTCTAGTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or63a	FBgn0035382	FBtr0072977	2	1	1	81	3L	2962474	2962568	ATAATGTTACCTCTGCCATCTC		59	2962604	2962628	GGTACATCTGTATATGATAGTAGGG		59	NA	
Drosophila melanogaster	50	CG12093	FBgn0035372	FBtr0073015	1	1	1	68	3L	2773115	2773133	ATTAGCTACTCCCATCTGC		58	2773007	2773025	ATAGGTGCCATATTCAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1017	FBgn0035294	FBtr0072841	3	1	1	183	3L	1942197	1942215	GAACTCAAGCGAATGAAGC		59	1942422	1942442	GATGATAGTACTTCTGCAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12022	FBgn0035276	FBtr0072782	2	1	1	102	3L	1804302	1804320	CAAATACCTCCCAACAGTC		57	1804447	1804465	AACTTAACGTACAGCTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13919	FBgn0035248	FBtr0072759	3	1	1	63	3L	1645836	1645854	ATTCCCATATACGTGACCG		58	1645881	1645899	CAACATAGAAGATGGCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12105	FBgn0035241	FBtr0072824	3	1	1	60	3L	1614779	1614798	GAAATAGATGTAGGCGGAGG		59	1614738	1614756	CATTATCAAACATCGGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13896	FBgn0035159	FBtr0072602	3	1	1	62	3L	711474	711497	GAAGACCTACTATAGCATAAGGAG		59	711435	711453	CAGTTTGGATGGAAATGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13884	FBgn0035138	FBtr0072568	3	1	1	92	3L	366257	366275	GACTACAATCATGGTGGCT		59	366183	366202	ATAACTTCCAAATAGCGGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1233	FBgn0035137	FBtr0072549,FBtr0072548	2	2	2	134	3L	364780	364798	CACCTGTGATCATGAGACC		59	364896	364975	TGAAGGTGTATCCGAAAGG		58	NA	
Drosophila melanogaster	50	CG7049	FBgn0035102	FBtr0072537	3	1	1	60	3L	175275	175293	ACAAGTCCTACTGCTACAG		58	175233	175252	GAACTGTCTTCTGTGTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me18S-G393	FBgn0086030	FBtr0114306	1	1	1	79	2R	20516233	20516251	TTAATGTGGCTCCCTTTCC		59	20516172	20516190	ACACTTATGATGTCCTGCA		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2765	FBgn0035087	FBtr0113119,FBtr0113118,FBtr0072408	3	3	3	212	2R	20849156	20849174	TATGGACGACACCATACTG		58	20848860	20848879	GAGTTCAGCATGTTGTACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3760	FBgn0022343	FBtr0072391,FBtr0072392	2	2	2	124	2R	20826705	20826723	TCCAAGACCTACGTTTCAC		59	20826863	20826882	AACTCGGTATTGGTGATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3579	FBgn0035037	FBtr0072318	2	1	1	124	2R	20495515	20495533	TTCCAGTACTACCACTTCG		58	20495679	20495697	AGCAAATTACATACCAGGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG4692	FBgn0035032	FBtr0072340,FBtr0072339	1	2	2	60	2R	20486728	20486748	GCAACAGATTCTACACTTTCC		59	20486688	20486709	TATAGTTTAGTGGTGATTGCCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13587	FBgn0035031	FBtr0072314	2	1	1	137	2R	20486315	20486333	CTTTCTTTACAGAGCCTGG		57	20486499	20486517	ATTTCGCAGATAAAGGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30166	FBgn0050166	FBtr0072358	1	1	1	223	2R	20313467	20313485	CAATCTAACACTGCCAACG		59	20313262	20313280	ATATAAATGGTCCTGGCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Chi	FBgn0013764	FBtr0072192,FBtr0072191	2	2	2	80	2R	19920383	19920401	CTTTGAGCTAAACAAGCGG		59	19920321	19920339	AAGAACTCCGTGGTAAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ken	FBgn0011236	FBtr0072129	2	1	1	86	2R	19762610	19762684	TTGATAAGGAACCTGCTGG		59	19762732	19762752	CTTAAAGTAGGTGGCATTCAC		58	NA	
Drosophila melanogaster	50	pita	FBgn0034878	FBtr0072113,FBtr0072112	2	2	2	60	2R	19436869	19436888	TTGAAGACATGGACAATGTG		58	19436828	19436848	GCATCGTCTTCTAAGTATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30193	FBgn0050193	FBtr0113364	1	1	7	120	2R	18817485	18817503	TGAGGCCAAGAAATCAGAC		59	18817586	18817724	ATGTTGTAGTTGAAATCGCC		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG13530	FBgn0034777	FBtr0071915	2	1	1	113	2R	18664520	18664538	CTACTCAACAGGTGAGTGC		59	18664084	18664443	TTTCGCAGATCATTTGGTG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG13512	FBgn0034760	FBtr0071864	1	1	2	86	2R	18548329	18548347	TCAACTTACTGTATGGCGG		59	18548604	18548622	CTTGTAGCAACAGTTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pgc	FBgn0016053	FBtr0112520,FBtr0112519	2	2	2	79	2R	18219710	18219729	CTACCAGATGGAGTACTCCT		59	18219771	18219789	ATCCATTGTCGTAGGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	comr	FBgn0034667	FBtr0071735	1	1	1	60	2R	17752645	17752663	GATTCGCAATACGATGACC		58	17752603	17752622	CGTCGAAGTAATCCTCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LBR	FBgn0034657	FBtr0071713,FBtr0071711,FBtr0071712	2	3	3	60	2R	17609736	17609757	GTGAAGAGGATATTGATGAGGA		59	17609777	17609796	ACATTGAAACTACGGAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10306	FBgn0034654	FBtr0071670	2	1	1	77	2R	17573048	17573066	GTCCTATGTGCAGGATCAG		59	17573107	17573125	AACTGGTACAGTTTCAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10080	FBgn0034641	FBtr0071658	1	1	1	80	2R	17514582	17514666	CTGTACAATGTCATTTCCGT		58	17514707	17514727	GTCTTCGTTGAAATCAGAGTC		58	NA	
Drosophila melanogaster	50	RpL29	FBgn0016726	FBtr0071593,FBtr0071594,FBtr0071592	2	3	3	137	2R	17181657	17181744	CACTCTGGGTATGGATGTG		59	17181844	17181863	TACAGAGTAACAGGCTTTGG		59	NA	
Drosophila melanogaster	50	CG4030	FBgn0034585	FBtr0071640	2	1	1	173	2R	16976492	16976573	CTCAAACGCTTCAGATGTC		58	16976337	16976355	TCGTTAGACACTTATCGCA		58	NA	
Drosophila melanogaster	50	Pros29	FBgn0003150	FBtr0071522	2	1	1	64	2R	16882760	16882778	AAACAAATTGCTGGACAGC		59	16882806	16882961	AGACCATGTTGTCGTTCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG11159	FBgn0034539	FBtr0086248	2	1	1	129	2R	16543722	16543741	ACATCCAAATCTATGCAGCT		59	16543481	16543578	CGTTAAGGAACTCTTCGCA		59	NA	
Drosophila melanogaster	50	CG18367	FBgn0034460	FBtr0086469	1	1	1	60	2R	15524252	15524270	TTCAAGAAGCAGTTCAGCA		59	15524294	15524312	TCAGCCATGACTTGATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16716	FBgn0034459	FBtr0086467	2	1	1	73	2R	15484048	15484067	TAAATGAAACAAGGCTCAGG		58	15484160	15484178	TCGTTCTTCGTTAGGTGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15121	FBgn0034456	FBtr0086465	1	1	1	60	2R	15396673	15396694	CTCACTGAACAAGTTCATTCTG		59	15396715	15396733	CTCTTCCCAGTAGTTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ena	FBgn0000578	FBtr0086583,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582	3	5	6	115	2R	15048910	15048988	CCATTCTCAAGGTCAATGG		58	15049064	15049085	GTTCTTGACTTTCTGAATCTCC		58	NA	
Drosophila melanogaster	50	Jheh3	FBgn0034406	FBtr0086622	1	1	1	97	2R	14748811	14748829	AAACATCACGGATTACGCT		59	14748664	14748682	TTTCAGCGGCATTAAATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15084	FBgn0034402	FBtr0086619	3	1	1	68	2R	14739213	14739231	CAACAGTCACCACATTTGG		59	14739263	14739281	GATCCTGTACTTGGAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15097	FBgn0034396	FBtr0086631	1	1	2	103	2R	14713006	14713024	ACCAGATGAGGAACAATGC		59	14712225	14712243	GAAATAGGGCGATACGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)03709	FBgn0010551	FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616	1	6	6	191	2R	14707870	14707888	GATGATCAACATCTCGCTG		58	14708043	14708123	ATGAGTAGGGATACCTGCT		59	NA	
Drosophila melanogaster	50	CG33998	FBgn0053998	FBtr0100053	2	1	1	60	2R	14626320	14626339	CTATGCGTATCTAACTGCTG		57	14626361	14626380	ACTCTTCAAGTGGATCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15073	FBgn0034379	FBtr0086607	2	1	1	80	2R	14594783	14594863	TCTATGTGAGAGGAGATTTCC		58	14594905	14594923	CACATGGTACCATAGTTGC		58	NA	
Drosophila melanogaster	50	CG15067	FBgn0034331	FBtr0086728	2	1	1	109	2R	14272831	14272849	CAAGCTCGAGATCATCTCC		59	14272740	14272758	GTATTGAGTTCCTCCAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	inaC	FBgn0004784	FBtr0087047	1	1	1	80	2R	12788515	12788593	GGATATAATAACGAGCTTCCTG		58	12788634	12788652	GTGGTAATCTCCTGTCTGG		59	NA	
Drosophila melanogaster	50	RpS15	FBgn0034138	FBtr0087124,FBtr0087123	3	2	2	101	2R	12458181	12458199	AACATGATCATCGTACCCG		59	12457857	12457875	GTAGTGACCGATCATCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Syn2	FBgn0034135	FBtr0087095,FBtr0087096	2	2	5	119	2R	12442744	12443115	TCCTTCAGAAACAACTACCTC		59	12443196	12443214	TGACACCTGTGGAAATTCC		59	NA	
Drosophila melanogaster	50	mRpL34	FBgn0083983	FBtr0111011	1	1	1	70	2R	11986724	11986742	GGAATGCTAGGATGTCGAC		59	11986776	11986794	ATTGTGACGTCCTTTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11808	FBgn0034000	FBtr0087366	2	1	1	69	2R	11104311	11104329	CAATGAAACGGTCACAGTC		59	11104359	11104380	CGGATGGAATATTACATCTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS23	FBgn0033912	FBtr0087575	2	1	1	136	2R	10103500	10103518	CAGATGGAAGGCTAATCCC		59	10103134	10103152	TCTTGCCGTTCTTGATGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13337	FBgn0033863	FBtr0087626	3	1	1	60	2R	9553890	9553909	CACTATTCAAGATCTCACGG		57	9553932	9553950	CACTTCTTTAGAGGCTTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cnn	FBgn0013765	FBtr0100656,FBtr0087704	3	2	5	139	2R	9334702	9334722	CGATCTACCTCACTAAATCAC		57	9332634	9333061	AAACTGGCATATGAGTTCTC		57	NA	
Drosophila melanogaster	50	CG13323	FBgn0033788	FBtr0087797	2	1	1	60	2R	8934623	8934642	GCAATAACAACGACTACCTG		58	8934582	8934600	TTGTTCTTGATCGGATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30053	FBgn0050053	FBtr0087873	1	1	1	60	2R	8577005	8577023	ATTGCGATCTCTGTGAAGG		59	8576907	8576926	GAGGAGTAGCTTACATTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sin3A	FBgn0022764	FBtr0087887,FBtr0087889,FBtr0087890,FBtr0087888	1	4	4	81	2R	8467283	8467301	CTCGAATACGTTCGAGGAC		59	8467118	8467238	GGAGACAACCTTATCCAGC		59	NA	
Drosophila melanogaster	50	Cpr49Ac	FBgn0033725	FBtr0087917,FBtr0087916	1	2	2	88	2R	8276584	8276771	GATCACTCTTACCTGACTGAG		59	8276821	8276839	TAGAATCCCTTGGCATGTG		59	NA	
Drosophila melanogaster	50	CG13168	FBgn0033705	FBtr0087998,FBtr0087999	1	2	2	97	2R	8142680	8142698	ATGACCAAGAAGCATCTGG		59	8142809	8142829	CTGGTATCGTACTTCTTAAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8858	FBgn0033698	FBtr0088008	1	1	1	112	2R	8083928	8084002	CAAGAGAAGTGAATCCAATCTC		58	8083837	8083855	CTTTCAAAGTGTTGCCCAG		59	NA	
Drosophila melanogaster	50	128up	FBgn0010339	FBtr0087976	3	1	1	107	2R	7926105	7926189	GGAATTTAAATATGCGCTGG		57	7926259	7926277	TTCTTCACAATCTGGACCA		58	NA	Nonspecific
Drosophila melanogaster	50	CG30025	FBgn0050025	FBtr0088158	1	1	1	62	2R	7241547	7241565	CTCCTTCAAGAACCACGAG		59	7241503	7241521	TTGATGATGGCAATGTCGT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9067	FBgn0033605	FBtr0088182	1	1	1	80	2R	7166602	7166620	ATCTCCACTTGCTCTACAC		58	7166476	7166561	GATCGAACTTCTTTGAAGTCAG		59	NA	
Drosophila melanogaster	50	Cpr47Ea	FBgn0033597	FBtr0088190	1	1	1	98	2R	7139895	7139913	TGGCTATTTGAAGAACCCG		59	7139729	7139747	TAGGTGATGGTGTAGACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12343	FBgn0033556	FBtr0088247	1	1	1	60	2R	6710208	6710226	CAGGAGGATCTACAACGAC		59	6710166	6710185	GAACTTGGAATTCCTCTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089355	3	1	26	157	2R	6419569	6419587	ACTTGGACTAATGGCACAG		59	6389556	6389872	TTAGTTTGTCTGAGGGCTC		58	NA	
Drosophila melanogaster	50	Caf1-105	FBgn0033526	FBtr0088310	1	1	1	60	2R	6355923	6355941	AAGATACCCGAGATTTCGT		58	6355881	6355900	TTTGCTGTATATCCACACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12907	FBgn0033511	FBtr0088351	1	1	1	62	2R	6241426	6241444	AAACGGACATGTCAAGGAG		59	6241467	6241488	GAAACGATATGGATTCGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CAP	FBgn0033504	FBtr0088342,FBtr0088347,FBtr0088341,FBtr0088344,FBtr0088338,FBtr0088345,FBtr0088340,FBtr0088343,FBtr0088339,FBtr0088346	1	10	10	83	2R	6192541	6192559	TGATGCCAACTGGTATGAG		59	6192605	6192993	CCATCTCGACTGACAATCTC		59	NA	
Drosophila melanogaster	50	Jra	FBgn0001291	FBtr0088410	3	1	2	183	2R	5984066	5984084	ATAATGGATCCGTCTGGAC		58	5984639	5984761	GCAATGACGTCAATCAGTG		59	NA	InUTR
Drosophila melanogaster	50	egr	FBgn0033483	FBtr0088405,FBtr0088406	1	2	2	103	2R	5970991	5971089	AAGTATGGGCTACCATGGA		59	5971156	5971174	TATTGGTCACCGTCAAGAC		59	NA	
Drosophila melanogaster	50	CG12744	FBgn0033459	FBtr0088378	3	1	2	104	2R	5763457	5763531	TTCAATCCGAATCTCTGGC		59	5763596	5763617	CGCATAAGACTCAATAAATCGG		59	NA	InUTR
Drosophila melanogaster	50	Pdk	FBgn0017558	FBtr0112892	1	1	2	82	2R	5320667	5320687	GATCTTCAACAAGACAAGCTC		59	5320731	5321874	CGTTCATATCGGAGCTCTG		59	NA	
Drosophila melanogaster	50	CG30344	FBgn0050344	FBtr0088583	1	1	1	83	2R	5034538	5034624	AAGAAGGCTCTGAGAATGG		58	5034671	5034689	ATAGATATAACCGCTGGCC		58	NA	
Drosophila melanogaster	50	sns	FBgn0024189	FBtr0111043,FBtr0088635	3	2	2	83	2R	4718009	4718027	TATCATCTGTGACTCGAGC		58	4718073	4718387	TTATTAATGCCTTCGATGGG		57	NA	
Drosophila melanogaster	50	Jon44E	FBgn0001285	FBtr0088704	3	1	1	108	2R	4579239	4579257	ATGTGCTCATCTACTTCGG		59	4579329	4579347	TTGTTCAGGAAGTCGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	3	9	9	95	2R	4568140	4568158	ATGAGCAGATCAAGACCTG		59	4568217	4568298	TATCACGGTAGTCCATGAC		58	NA	
Drosophila melanogaster	50	Pabp2	FBgn0005648	FBtr0088786,FBtr0088785	3	2	2	185	2R	4020283	4020454	GGCGTCAAATAAAGGTAATGTC		59	4020663	4020683	AGTAAGGAGCGTAGTAATTGG		59	NA	
Drosophila melanogaster	50	nito	FBgn0027548	FBtr0088857,FBtr0088858	2	2	2	123	2R	3850891	3850967	GAATATAGACCACGCGGTC		59	3851054	3851072	GATCGTAGGGATCAATCGG		59	NA	
Drosophila melanogaster	50	Dgk	FBgn0085390	FBtr0112581,FBtr0112580	2	2	4	80	2R	3738268	3738288	CCATTGTTAACCAGATGATGG		59	3736488	3738226	TCATCTCTTGCAGTATCGG		58	NA	
Drosophila melanogaster	50	phr	FBgn0003082	FBtr0088839,FBtr0088838	2	2	2	60	2R	3713282	3713301	CAGTTTCTTACCCACTTGGA		59	3713324	3713342	AGAACTCCTGTATGTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpld	FBgn0015930	FBtr0088985,FBtr0088987,FBtr0088986	1	3	3	119	2R	3371061	3371161	TATGTGGGATATCGAGGTG		57	3370960	3370978	TCAATGAGGAACACAATGC		58	NA	
Drosophila melanogaster	50	so	FBgn0003460	FBtr0088970	1	1	1	92	2R	3312437	3312455	AATACAAGGAGCTGTACCG		59	3312511	3312666	CATAATGCGCTTTCAACCA		59	NA	
Drosophila melanogaster	50	CG3287	FBgn0028954	FBtr0086157	1	1	2	148	2R	2699449	2699467	TACCAGATAGAAACGCGTC		59	2699578	2700294	ATTATCGTTTGCACATTGGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG9436	FBgn0033101	FBtr0086134	2	1	1	62	2R	2645948	2645967	GGTTTGGAATACGTAGACCT		59	2645905	2645923	GTCATTGTGGAACTTCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)01289	FBgn0010482	FBtr0110900	2	1	4	115	2R	2611427	2611445	ATTCGTTAAGACCAGGGAC		58	2611124	2611348	CAATCGAACCAGAGTCCTC		59	NA	
Drosophila melanogaster	50	Nipped-B	FBgn0026401	FBtr0111119,FBtr0111118	2	2	2	80	2R	580450	580531	TAATTAGAGGTTATGCGAGTCG		59	580391	580412	TAGTGCGAAGAAGTGTATACAG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-525i	FBgn0083030	FBtr0113553	1	1	1	60	2L	20421686	20421705	AAATAGACAATCGGCATCCT		59	20421727	20421746	ACACAAACACAAGTCATCTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	snRNA:U4:39B	FBgn0003930	FBtr0081489	3	1	1	86	2L	21215134	21215152	CCAATGAAGTCCTCCTGAG		59	21215066	21215084	TAGTGGACGGTATTTCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycK	FBgn0025674	FBtr0085942,FBtr0085941	1	2	2	60	2L	22129184	22129204	AGCACAGTAGTTTGTCTACAG		59	22129144	22129162	CCAAATGGATAAGAGCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10722	FBgn0032848	FBtr0081335,FBtr0081334	2	2	2	195	2L	20095929	20096010	GAACTTCAGCGTTACAACG		59	20096166	20096187	ACTATGTGTACACAATGTACCC		59	NA	InUTR
Drosophila melanogaster	50	CG10680	FBgn0032836	FBtr0081303	1	1	1	162	2L	19964562	19964581	ACGATGTCGAGTTTCTAGAG		58	19964768	19964850	TAGTTGGGTTGACGAATGG		59	NA	
Drosophila melanogaster	50	Hs2st	FBgn0024230	FBtr0081288	2	1	1	109	2L	19443926	19443944	AATTTAGTCCGCAAGAAGG		57	19443775	19443793	CAGAAGAAGGGTATCTGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0100316,FBtr0100313,FBtr0081020,FBtr0081016,FBtr0081013,FBtr0081015	3	6	12	102	2L	17651479	17655676	CATACTGATACTCGTCTTGGT		59	17651397	17651415	GTTGATGATATTCTCGCGC		59	NA	
Drosophila melanogaster	50	CG6012	FBgn0032615	FBtr0080923	1	1	1	214	2L	16861180	16861198	CAATGTGGTCCTAATCGCT		59	16860564	16860582	ATTTCAGCAAGGATTTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	mdy	FBgn0004797	FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917	2	4	4	87	2L	16820785	16820804	CATAACGCCCTAATCCTGAG		59	16820919	16825419	CAATTATTTCCATGGCTAGACC		59	NA	
Drosophila melanogaster	50	Idgf3	FBgn0020414	FBtr0080864,FBtr0080862,FBtr0080863	2	3	3	91	2L	16451847	16451865	TGATCAAGGATTTGAGTGC		57	16451920	16452204	ATCATAGTACCAGCTGGAG		57	NA	
Drosophila melanogaster	50	CG5869	FBgn0028894	FBtr0080851	3	1	1	97	2L	16302195	16302268	ATAGCCAGATCGAATTGCA		59	16302116	16302134	GTCTAGTTCGCGTATCTCG		59	NA	
Drosophila melanogaster	50	pkaap	FBgn0040079	FBtr0080826	1	1	1	80	2L	16290139	16290157	TCGCTGACTTTCTAAAGTC		57	16290199	16290288	GATGAGTGGTGGAATTATCTC		57	NA	
Drosophila melanogaster	50	CG18507	FBgn0028527	FBtr0080528,FBtr0080527	3	2	2	137	2L	13668242	13668260	CATCAGCATAATGGAGGTG		57	13668697	13668715	AAGTGTGACAATCACATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33645	FBgn0053645	FBtr0091622	3	1	1	60	2L	13532977	13532995	GACAATCGCACCTATATGG		57	13533018	13533037	CGGTAATATCGTCAACTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nnp-1	FBgn0022069	FBtr0080473	1	1	1	60	2L	13365041	13365059	TTTAACAGCAAGAGACGCA		59	13364999	13365020	TCTGGTAAGTCTCAAAGATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5792	FBgn0032455	FBtr0089908,FBtr0089907	1	2	2	140	2L	12713556	12713574	GAGTTCAGTCTCCTTGTCG		59	12713367	12713452	ATGAAGCATCTTGGTGGTC		59	NA	
Drosophila melanogaster	50	RpL9	FBgn0015756	FBtr0080163,FBtr0080164	1	2	2	101	2L	11003232	11003522	ACATGATCAAGGGAGTCAC		58	11003149	11003167	CAATGACCGTGTTGTTCTC		59	NA	
Drosophila melanogaster	50	SCAR	FBgn0041781	FBtr0080148	2	1	1	89	2L	10981421	10981500	TCGAGATGGTATTACTCTACGT		59	10981550	10981568	AAGATTGAAGCCACATCCA		59	NA	
Drosophila melanogaster	50	Myo31DF	FBgn0086347	FBtr0080035,FBtr0080036	3	2	2	102	2L	10494502	10494521	CTGGATATTTACGGCTTCGA		59	10494359	10494440	GCACCAGTTCTATGAATAACTG		59	NA	
Drosophila melanogaster	50	CG33303	FBgn0053303	FBtr0080052	1	1	1	60	2L	10374454	10374472	CAATTTGGTCGAAAGCCAC		59	10374412	10374430	AGAAGTCTTCGAGAAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31720	FBgn0051720	FBtr0113413,FBtr0089788	3	2	2	73	2L	10236397	10236415	ATACTCAGTACTGCGTGGA		59	10236224	10236242	CATCTTGAAGCGAATCCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5708	FBgn0032196	FBtr0079956,FBtr0079955	1	2	2	80	2L	10225002	10225021	GCGTATTTCATCTAAGGTGC		59	10224876	10224965	CTCCTAACATAGTATACCTATCACC		59	NA	
Drosophila melanogaster	50	CG34159	FBgn0085188	FBtr0112350	3	1	1	179	2L	10203534	10203553	GATACAATAACCACAGTGCC		58	10203023	10203392	GTTCGTAGACCTTGATCCA		58	NA	
Drosophila melanogaster	50	CG13392	FBgn0032033	FBtr0079720	1	1	1	60	2L	8382147	8382165	GAAGTGTTTCTGTTGTGGC		59	8382105	8382123	TTAAGGTTCCTAAGGCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pvf3	FBgn0085407	FBtr0112611	1	1	3	80	2L	7155493	7155513	CCTCTCATAAGGAACATTGAG		57	7107537	7118888	AATGTTCTCCACATCATGG		57	NA	
Drosophila melanogaster	50	Pvf3	FBgn0085407	FBtr0112612,FBtr0112613	2	2	3	101	2L	7133057	7133075	ATCTCACACCAAGGAACTG		59	7132974	7132992	TCGTTGTAGTGTAGTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11289	FBgn0031887	FBtr0079404	1	1	1	60	2L	7069185	7069206	CGATCAACGAGATAATCTTCAG		58	7069227	7069245	GGTGGATAAGGTCAAACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18304	FBgn0031869	FBtr0079367	3	1	1	84	2L	6934897	6934997	AAGGAACAATTACAGAGCAC		58	6934832	6934850	GATTCTTCACCTGTTGCTC		58	NA	
Drosophila melanogaster	50	CG9511	FBgn0031810	FBtr0113025	1	1	2	94	2L	6408281	6408299	GATACTGGAAGTGAAGGCA		58	6407521	6407541	GGGTATTTAAAGTGGGAAAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13983	FBgn0031792	FBtr0079285	3	1	1	60	2L	6264175	6264194	ATCAGGAATCGGATAGACAC		58	6264134	6264152	GGGTAGTACGGGTAGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lid	FBgn0031759	FBtr0079231,FBtr0079232	2	2	2	82	2L	5993336	5993482	GTATCAATAAGGTGCGAACTC		58	5993274	5993292	GAACAACTCTAGCTCCTCC		59	NA	
Drosophila melanogaster	50	CG11029	FBgn0031735	FBtr0079136	2	1	1	93	2L	5746739	5746757	GACATGATCAACGAGTTCC		58	5746814	5746832	AGATCTTCAGGATGTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8892	FBgn0031664	FBtr0079045,FBtr0079046	1	2	2	60	2L	4980310	4980329	TATTCTTCCCGATTTGAGGC		59	4980269	4980289	TGCATCCTCCTGAATAAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL27A	FBgn0010410	FBtr0077452	2	1	1	85	2L	4457497	4457748	GTTAAATTCGGCTACTACAAGC		59	4457433	4457453	TTCTTAGAGAAGTACTTGGCC		59	NA	
Drosophila melanogaster	50	CG10039	FBgn0031581	FBtr0077507	3	1	1	63	2L	4007885	4007906	CACCACTACTACATTTGTACCA		59	4008771	4008789	ATTCGCGTAGTAGAGAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pgant4	FBgn0051956	FBtr0114524,FBtr0077523	3	2	2	60	2L	3473690	3473773	GTCAACTACAATTGGCTGC		59	3473795	3473815	TGGAGATCTTGGGATTAATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3523	FBgn0027571	FBtr0077659	2	1	1	81	2L	3067046	3067064	CACATGGGAGGAGAAACTC		59	3067107	3067195	GGATTTCTTGATCGTTTCCAC		59	NA	
Drosophila melanogaster	50	Hrs	FBgn0031450	FBtr0089751,FBtr0089750	3	2	3	168	2L	2740460	2740524	CAGAAAGATGTCACTCCCA		58	2740656	2740674	TGAACATCTCGCAGTTCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Gr23a	FBgn0041248	FBtr0077702	3	1	2	184	2L	2671790	2671866	CAAAGCTATAATCTAGGCCG		57	2672012	2672086	GCTGCAAACATACTACTCAG		58	NA	
Drosophila melanogaster	50	Gr23a	FBgn0041248	FBtr0077701	3	1	2	300	2L	2670562	2670580	CCTACTGGATGATCATGGG		58	2672012	2672086	GCTGCAAACATACTACTCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	p16-ARC	FBgn0031437	FBtr0077694	3	1	1	101	2L	2580477	2580495	GATGAGAGCGAGATTACGA		58	2580560	2580578	CACATTCTGGTTCTTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	oaf	FBgn0011818	FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780	1	4	4	103	2L	2495396	2495415	GTATTACCTCCAACATTGGC		58	2495481	2495581	GATTTGAACCTCATTGCGA		58	NA	
Drosophila melanogaster	50	CG15358	FBgn0031373	FBtr0077892	1	1	1	60	2L	1882852	1882870	CTGGATAGACTGGAAAGCC		59	1882810	1882828	TCCTATCGAACTTGGAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31937	FBgn0031360	FBtr0077884	1	1	1	69	2L	1730318	1730336	ATCTCGACGAGCATAAGAC		58	1730369	1730387	TTGACAAGGACATCCAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18131	FBgn0031343	FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934	2	4	6	63	2L	1500147	1500167	GCCAGCTTATATCTAATGACC		58	1500036	1500123	GATATGTTGACTTGAGTGGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG4297	FBgn0031258	FBtr0078085	2	1	2	125	2L	462391	462409	AAATCGATGGTTCCGAGAG		59	462029	462047	TCTTCATCAGGATGGATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11592	FBgn0025686	FBtr0078134	3	1	1	60	2L	287984	288005	CCATAAATATAGTGAACGGAGC		58	287945	287964	CTTGTTCCAATTGTGTTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	net	FBgn0002931	FBtr0078162	3	1	1	60	2L	84053	84072	GACTCCCAACTCTAAATCCA		58	84012	84030	ACCAGTTGCATTCATACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-3436b	FBgn0086602	FBtr0091803	2	1	1	119	X	6636491	6636509	AACTAGGTGGTTATCCTCC		57	6636390	6636408	CAAGGTTCAGGTAGAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	roX1	FBgn0019661	FBtr0070635	1	1	2	60	X	3755981	3756070	CTAAGTGGAAACTTCTCGTG		58	3755940	3755959	TAGGTCACCCTATCAGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mst	FBgn0020272	FBtr0077211	2	1	1	147	X	21260878	21260897	CCAGGATCACTAGTTATCCC		58	21261065	21261084	TTATTGTTTCGCCAGATGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Obp19b	FBgn0031110	FBtr0077302	1	1	1	171	X	20288157	20288175	GATCAACATGATGTTCCCG		58	20288680	20288698	TCATTCCTTGATCTCGGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17068	FBgn0031098	FBtr0077341	3	1	1	60	X	20120119	20120139	ACCAGATCTACAAGATCTACG		58	20120079	20120097	CAGGAGTACATGGGATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14227	FBgn0031058	FBtr0074755	1	1	1	104	X	19582287	19582373	AGTATTCAGACTTCGTGCG		59	19582201	19582219	GAAAGTCTTCTGCAGTGGT		59	NA	
Drosophila melanogaster	50	CG7326	FBgn0030970	FBtr0074653	1	1	1	60	X	18756516	18756534	TGAGAACGAGGATCAACAC		59	18756474	18756495	CATTTGATCCGTAAACACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13008	FBgn0030780	FBtr0074323	3	1	2	92	X	16606046	16607821	GTAAATTCAAGGCGTCAGC		59	16607877	16607895	AGGATTCCCTAGAGTGGTG		59	NA	
Drosophila melanogaster	50	vap	FBgn0003969	FBtr0074141,FBtr0074143,FBtr0074142,FBtr0074140	2	4	4	81	X	15894965	15894983	ACGATCTTTGGTCATGGTC		59	15894837	15894921	CTCCATGTATTGTTCCTTGC		58	NA	
Drosophila melanogaster	50	CG8952	FBgn0030688	FBtr0074193	1	1	1	66	X	15660250	15660343	AGATAATCGCATAGTGTCCG		59	15660203	15660221	CTTCAGTATGACCTGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9240	FBgn0030669	FBtr0074060	3	1	1	68	X	15594658	15594676	TGATCAGGTGCTAATCCAG		58	15594608	15594627	TTCTTGTCATCCGAATTACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	acj6	FBgn0000028	FBtr0074015,FBtr0100328	2	2	4	101	X	15271607	15272223	CTATTCACATCTCATCATCCTG		58	15265712	15266194	AGATATCACCATTCTGACGT		58	NA	
Drosophila melanogaster	50	CG9072	FBgn0030614	FBtr0074029	3	1	1	61	X	14989856	14989875	GAGCAACTGATTGTCTATCG		58	14989814	14989834	TCATAGTGATCCTTCTGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1368	FBgn0030539	FBtr0073891	2	1	1	62	X	14069543	14069562	CTACGTCTACAGGAAGTAGG		58	14069587	14069605	GACACTGTTTCGTGTTCAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG15753	FBgn0030491	FBtr0073781	1	1	1	159	X	13415076	13415094	TATGACGCAAACAAGTCTC		57	13416787	13416805	GTTGACAAACAGCGATTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34411	FBgn0085440	FBtr0112679	2	1	1	80	X	13061675	13064064	ATTGAGTATTCTGGACCTTCG		59	13061615	13061633	ACCTCCAAATTCGGTAGTC		58	NA	
Drosophila melanogaster	50	CG1837	FBgn0030329	FBtr0073551	2	1	1	96	X	11612713	11612731	GGTTGACCTTACCGAAGAC		59	11612791	11612870	CAAACGCTGACAATGACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	bif	FBgn0014133	FBtr0073527,FBtr0073526	3	2	2	140	X	11575137	11575759	TGCAATTGCAGATTTCACAG		59	11575862	11575880	ACAACAGAGTGATGACCTC		58	NA	
Drosophila melanogaster	50	Tim8	FBgn0027359	FBtr0073482	2	1	1	140	X	11262534	11262555	GGTCAATTTGTAGATTGCTCAC		59	11262656	11262752	CGTTGAACTCGTGTATCTG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG2972	FBgn0030177	FBtr0071430	2	1	1	73	X	9977537	9977555	CATTAAACACTGCGTGGAG		59	9977592	9977610	TCACTTTCAGATCGATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14431	FBgn0029922	FBtr0071002	3	1	1	82	X	6858226	6858245	CTCCATCATCGATATCGAGC		59	6858776	6858794	ATGAGGAAGATGTCTGTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4542	FBgn0029906	FBtr0070970	1	1	1	101	X	6716154	6716235	GTGCCAAGAAACAAAGTCC		59	6716300	6716318	TTAAGATGGCCTTCTCGTG		59	NA	
Drosophila melanogaster	50	Spx	FBgn0015818	FBtr0070894	2	1	1	99	X	6149975	6150067	AAGATGCCACCATCTATGC		59	6150130	6150206	ATGTGTACGTTCACCACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	vanin-like	FBgn0040069	FBtr0070879	1	1	1	80	X	6094738	6094756	CTGCAAGATAGTTTGCTGC		59	6094613	6094695	TTGGACATAGCTATCTTCCG		58	NA	
Drosophila melanogaster	50	CG15770	FBgn0029803	FBtr0070811	2	1	1	60	X	5659602	5659621	GATAATACCGATGACGACGA		59	5659643	5659662	AATATAAACCTGCAAGGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4119	FBgn0028474	FBtr0070799	1	1	1	90	X	5560824	5561254	GAATTTGACGGACCTATTGC		59	5561307	5561325	CATCTACCTTGGCTACCAG		59	NA	
Drosophila melanogaster	50	CG12688	FBgn0029707	FBtr0070653	1	1	1	63	X	4275989	4277077	AAGAAGATCCAAGCATCCC		59	4277104	4277122	GAGTGTCCTCTAAGTCCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	fd3F	FBgn0061173	FBtr0070602	2	1	1	114	X	3704156	3704257	GATGTCCTGTTGGATAATGAC		58	3704333	3704351	TTTGGTTGTTATTGCCTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3630	FBgn0023540	FBtr0070385	1	1	1	180	X	2065005	2065023	AACATCCACGTGATGAAGG		59	2065236	2065254	CTACCAACTTGTGTTTGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3600	FBgn0026087	FBtr0070322	3	1	1	215	X	1887551	1887569	TGACCATTATCAAGACGCC		59	1887748	1887766	GTTCATTGCTATTTCCGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14804	FBgn0014411	FBtr0070311	3	1	1	65	X	1768501	1768520	ATTCAAGTGTCTAGCGAAGG		59	1768547	1768566	AATGGATAGCTGTTGTTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14814	FBgn0023515	FBtr0070370	1	1	2	96	X	1758265	1758283	ATATTCAAGCAACAGCGGT		59	1758125	1758208	CGCAGAGGTTTAGTAAATATGC		59	NA	
Drosophila melanogaster	50	CG11418	FBgn0024360	FBtr0070236	1	1	2	92	X	1240148	1242267	CCATGAGTAACCTCACTGG		59	1240074	1240092	GAATGGTAAAGGTCAACGG		58	NA	
Drosophila melanogaster	50	CG40947	FBgn0085540	FBtr0113953	1	1	1	122	U	8131646	8131664	TTCAGGACTCATTCAACCG		59	8131542	8131560	GAATCATGCCGTACTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33978	FBgn0053978	FBtr0100021	2	1	1	82	4	185016	185101	TCACTTTCTCAAAGACTCCA		58	184953	184971	CTGTCCTCGATCAATTGTG		58	NA	
Drosophila melanogaster	50	tRNA:CR31485:Psi	FBgn0051485	FBtr0081662	2	1	1	61	3R	2645041	2645060	GCTTGAATAGCTTAGTTGGT		57	2644999	2645017	GAACTTGAACCGTGTACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snRNA:U1:95Cc	FBgn0004187	FBtr0084487	1	1	1	77	3R	19652076	19652094	TTAACCGTGATCACGAAGG		59	19652135	19652153	TAATCGCAGAGGTCAACTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	sip3	FBgn0039875	FBtr0085842	3	1	1	99	3R	27598368	27598386	GGTCTACATCACCAAATCG		57	27598511	27598584	CAGGAAGATCTTGCTTAGC		57	NA	
Drosophila melanogaster	50	CG2135	FBgn0039874	FBtr0085858	1	1	1	151	3R	27595741	27595759	CTTGGTATCAGAACTCGGG		59	27595554	27595626	AATAAAGGCGGGAAGTGAG		59	NA	
Drosophila melanogaster	50	CG11317	FBgn0039816	FBtr0085741	3	1	1	160	3R	26917485	26917784	TGACTACGACGAATCACTC		58	26917220	26917238	CAAATTCCTCCTTGTGGTG		58	NA	
Drosophila melanogaster	50	CG2218	FBgn0039767	FBtr0085627	3	1	1	151	3R	26252986	26253004	GAGATAAGCGATCCCTACG		59	26252532	26252871	AAGATCATTAGCTCCCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tace	FBgn0039734	FBtr0085551,FBtr0085550	2	2	2	125	3R	25826681	25826758	GCATATGGATCACGATAGCT		59	25826846	25826864	ATGTGATAGGTTTCCTCCG		58	NA	
Drosophila melanogaster	50	CG31036	FBgn0051036	FBtr0114571,FBtr0085501	1	2	2	80	3R	25736582	25736670	GCAGTCAACAGAAACTCCT		59	25736714	25736732	TTCGGTCCTCTCACTAGTC		59	NA	
Drosophila melanogaster	50	CG7593	FBgn0039687	FBtr0085461	3	1	1	171	3R	25550369	25550387	GTGGGACCCTATTACAAGC		59	25550160	25550235	AACAATACAGGACACAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11874	FBgn0039634	FBtr0085416	2	1	1	81	3R	24936985	24937088	GGATGATGAATTCAAGGAAGG		58	24936924	24936943	CTCGAATAGGTTTACATCGC		58	NA	
Drosophila melanogaster	50	CG33204	FBgn0053204	FBtr0089470	2	1	1	60	3R	24741086	24741105	CCATTAATTAGAGGAGTGGG		57	24741127	24742157	GATCTCTTCGATCGTCTAGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14526	FBgn0027578	FBtr0085331	1	1	1	60	3R	24710899	24710919	CAACATCCTGATAGAGAACAC		58	24710939	24710959	AATGTAGAAGGGTTGTAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085143,FBtr0085139	1	2	12	93	3R	22892851	22892869	ATGATGAGGGAGTTGTCCT		59	22892193	22892339	AAGACAAAGGTATCCGATGG		59	NA	
Drosophila melanogaster	50	CG14242	FBgn0039443	FBtr0085034	3	1	1	112	3R	22462480	22462560	CTCCTTGTTGTTACTATGGAC		58	22462634	22462652	TAAAGTATTCCGTGGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	m1	FBgn0002578	FBtr0084957	1	1	1	60	3R	21840539	21840557	TGATGAGCCAAACTTTGAC		58	21840579	21840599	GTATTTCCGTATACACATGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14540	FBgn0039398	FBtr0084948	1	1	1	145	3R	21786302	21786388	GAACAAGTCATTAGCAAGGT		58	21786496	21786514	AGACTCAGCATTTCCTGAG		58	NA	
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0113385,FBtr0084927	3	7	7	111	3R	21527327	21527346	TAACCAGGTCCACAAATCTG		59	21527166	21527253	GACATAGATGACGCTTGCT		59	NA	
Drosophila melanogaster	50	CG11902	FBgn0028647	FBtr0084831	2	1	1	80	3R	21161709	21161728	AAGTCGTATCATCTACGTCG		59	21161770	21161840	TTCAGATGGCTTACATTCCT		58	NA	
Drosophila melanogaster	50	CG10425	FBgn0039304	FBtr0084867	3	1	1	150	3R	21087199	21087281	CTTAAGGATGCCCTGAAGG		59	21087067	21087085	AGCTAACTATTCGCAGTGG		59	NA	
Drosophila melanogaster	50	CG6422	FBgn0039261	FBtr0113281,FBtr0084795,FBtr0084794	1	3	3	90	3R	20864033	20864153	TGAAGTCTCTGGCAATGAC		59	20863961	20863982	GTTCATATTGTTCCATGGAGTG		59	NA	
Drosophila melanogaster	50	CG3744	FBgn0039240	FBtr0084726,FBtr0084725,FBtr0084727	2	3	3	85	3R	20700371	20700443	GATACAATTCTGGGCTGCT		59	20700304	20700322	GTTCTGTGGACAAATCTGC		59	NA	
Drosophila melanogaster	50	crb	FBgn0086905	FBtr0111008,FBtr0084603	1	2	2	80	3R	20135391	20135412	CTGCGAGATCAACATTAATGAG		59	20135452	20135536	GTATAGGTTCCAATCCCGTC		59	NA	
Drosophila melanogaster	50	Orct	FBgn0019952	FBtr0084599	2	1	1	65	3R	20102833	20102854	GCAGTATCTATGAACTATCACC		57	20102880	20102898	AGGAGCACCTTTCATTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10365	FBgn0039109	FBtr0084447,FBtr0084448,FBtr0084446,FBtr0084449	1	4	4	107	3R	19554819	19554837	ATTCGAGGATATGTTCGCC		59	19555685	19556379	AGTGATTCCCTCTTTGTCC		58	NA	
Drosophila melanogaster	50	CG6688	FBgn0039038	FBtr0084343	3	1	1	110	3R	18839661	18839680	CTTGAGAGTGTCTGAAATCG		58	18839750	18839883	CAGCAGATGCTATTAGTATCAC		58	NA	
Drosophila melanogaster	50	CG31281	FBgn0051281	FBtr0084339	3	1	1	105	3R	18792273	18792359	TGCTAACATGAAGGACTCC		58	18792428	18792446	AGAAATTCTCTTCGACCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rumi	FBgn0086253	FBtr0084320	3	1	1	107	3R	18576191	18576209	GTTTGGTAGGAACAGGAGG		59	18576052	18576121	TGAAGCTAAATTCATCCTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wfs1	FBgn0039003	FBtr0084334	2	1	2	124	3R	18515890	18515967	TGGAATCTGGAAGATCGTG		59	18515727	18515803	AGATTGGGCTCTACTATGGA		59	NA	
Drosophila melanogaster	50	Cby	FBgn0067317	FBtr0084136	3	1	1	86	3R	17693874	17694045	CTTCAAGCAGTTGTTTGCA		59	17694095	17694113	CCTATATTGCAACGTCCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31177	FBgn0051177	FBtr0084129	2	1	1	132	3R	17586054	17586195	CAGCAATACCACTTGACCA		59	17586291	17586309	TCATGGGATAACCAACCTG		58	NA	
Drosophila melanogaster	50	CG17271	FBgn0038829	FBtr0110823	3	1	2	93	3R	16646431	16646449	ACTTCAAGATGCACGACTC		59	16645201	16646374	TCTCCACTATCCTTGACGT		59	NA	
Drosophila melanogaster	50	CG11447	FBgn0038737	FBtr0083815	2	1	1	62	3R	15687529	15687547	CATGATGAACTATCGCTGC		58	15687573	15687591	ATTCCGTATTTGTCGTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11779	FBgn0038683	FBtr0100548	1	1	4	118	3R	14977295	14977313	TTTAAACAAACCGCAGACG		59	14975339	14977213	AATCGTCGGAAGTATCCTC		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG5265	FBgn0038486	FBtr0083407	2	1	1	60	3R	12965372	12965390	AACAGTCAGTTTGGAAAGG		57	12965413	12965432	TATCGTCGGTAAACCTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14879	FBgn0038419	FBtr0083326	1	1	2	177	3R	12172999	12173110	TGAACATCTTCGACGAGTC		59	12172840	12172858	TTGACCTTCTGTACATCGC		59	NA	
Drosophila melanogaster	50	Sb	FBgn0003319	FBtr0083250	1	1	1	170	3R	11965602	11966315	AGACACAGAAGAAGCACAC		59	11966447	11966467	GCAATTGACTACGATTAAGGC		59	NA	
Drosophila melanogaster	50	CG3303	FBgn0038381	FBtr0083200	2	1	1	80	3R	11734653	11734820	CCTAGAAACCTCTTTGAATTGC		59	11734860	11734879	AAAGAGCCTCATTAGCAGAG		59	NA	
Drosophila melanogaster	50	spn-E	FBgn0003483	FBtr0083183	3	1	1	83	3R	11667898	11667916	ACAAAGCCTTTAAACGTCG		58	11667962	11668048	GTTGACGATGCAAGTAATCG		59	NA	
Drosophila melanogaster	50	CG6499	FBgn0038309	FBtr0113238	2	1	1	92	3R	11073838	11073911	ACCAGCTCCATCTATTCCT		59	11073764	11073782	CGTAATGGACACTAGGGAG		58	NA	
Drosophila melanogaster	50	Cyp313a1	FBgn0038236	FBtr0082954	2	1	1	96	3R	10347636	10347728	CTTCGAATCGCTCATATCTC		58	10347786	10347805	TCGTAACTTATCATAACCGC		57	NA	
Drosophila melanogaster	50	Aats-met	FBgn0027083	FBtr0082895	3	1	1	116	3R	10084727	10084745	CTACGTCTGGTTAGATGCT		58	10084562	10084580	AACTTGAGGATGTCCTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9588	FBgn0038166	FBtr0082849	1	1	1	131	3R	9501449	9501531	GAAAGAGCTGGTCTCTGTG		59	9501336	9501354	TTTCAGCTGGACATTCTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CheA87a	FBgn0038142	FBtr0082749	1	1	1	60	3R	9195581	9195602	GATATCTCGATCTGAATCAACG		58	9195621	9195697	CTTGAAACCTTAAGCACAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HisCl1	FBgn0037950	FBtr0082471,FBtr0082472,FBtr0082470	3	3	3	81	3R	7614291	7614373	AGTACTCAACAGGTAACTTCAC		59	7614415	7614433	TAGGTGTGGAACAAATGGT		58	NA	
Drosophila melanogaster	50	CG17187	FBgn0037882	FBtr0082365	2	1	1	78	3R	7057294	7057312	ACAAGAATCCGGACAATCC		59	7057234	7057253	GATTCATCCGTGAGGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14694	FBgn0037845	FBtr0082298	1	1	1	110	3R	6684642	6684660	ATACAATGGAGCTTGTGGT		58	6684496	6684568	ATTCCAGGCTATTGTTGGT		58	NA	
Drosophila melanogaster	50	CG31278	FBgn0051278	FBtr0082319	2	1	1	98	3R	6533656	6533674	TCAGGATCATAGCAATGGA		57	6533505	6533594	AAATAGTCAGTGGCAACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31407	FBgn0051407	FBtr0082214	3	1	1	74	3R	5848950	5848968	TCTTTAGCAGCCTCAATGG		59	5848894	5848912	ACTGGTCTATATCCCGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8301	FBgn0037717	FBtr0082073	1	1	1	97	3R	5410209	5410227	TCATCCATCTGAAGACCCT		59	5410288	5410951	ATAGGATGCAAAGACCTCC		58	NA	
Drosophila melanogaster	50	MBD-like	FBgn0027950	FBtr0082069	1	1	2	112	3R	5386317	5386335	AGCAACAGATCGAACTCAG		59	5386720	5386738	TTTATGGTTGCGAATCACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp313b1	FBgn0037601	FBtr0081893	2	1	1	130	3R	4470310	4470380	GCTTATAATGGCTTGACCG		58	4470198	4470217	ATAAACCCAAACAGTATGCC		58	NA	
Drosophila melanogaster	50	CG1091	FBgn0037470	FBtr0081640,FBtr0081641	3	2	2	86	3R	2909299	2909420	GCATGCTAGGTATTCAGCA		59	2909231	2909249	TGTATGGGATCCTGTACCA		59	NA	
Drosophila melanogaster	50	Obp83ef	FBgn0046876	FBtr0078618	2	1	1	60	3R	1935754	1935773	TCAAAGGAACCTATTCCCTG		59	1935713	1935731	GATCGTAGAATCCCATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MTA1-like	FBgn0027951	FBtr0078734,FBtr0078733	2	2	2	91	3R	1466845	1466863	GCTCACAATAATTCCCACG		58	1466659	1466793	GAACTATAGTAACTTCAGTGCC		58	NA	
Drosophila melanogaster	50	7B2	FBgn0041707	FBtr0078789,FBtr0100112	3	2	2	70	3R	1203302	1203320	CAGGATAGTGCTGATGTGG		59	1203353	1203372	ATCTGCATGATGTACTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1129	FBgn0037279	FBtr0078871,FBtr0078870	1	2	2	74	3R	639630	639648	GTGGAGTTTGCCAATAAGC		59	639686	639966	AATAACCTGACGACATCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31528	FBgn0051528	FBtr0078923	1	1	1	72	3R	243028	243046	TTCTGTTAAGCAGAGCGAC		59	243082	243100	TGCAGTAGAAGTCATCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1103	FBgn0037235	FBtr0078909	2	1	2	85	3R	163949	163967	TGAATTCAACTTCGGACTC		57	164016	164774	AGGTATACACATCAACCGA		57	NA	
Drosophila melanogaster	50	CG9778	FBgn0037233	FBtr0078957	2	1	1	75	3R	143409	143427	CAACTCGATAACAACCAGC		58	142805	142823	ATCGCTGGTGTCAAATAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41457	FBgn0084019	FBtr0111149	1	1	1	75	3L	23453246	23453264	AGATGCGGAAGACTTTGTC		59	23453189	23453207	AGAGCTTTCAGAATTCCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32461	FBgn0052461	FBtr0078567	3	1	1	60	3L	22948300	22948320	GGAATTAATTGAAGAGGAGCG		59	22948260	22948278	GCTTATCATCCGACCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6049	FBgn0037081	FBtr0078400,FBtr0078399,FBtr0078398	3	3	3	80	3L	21414145	21414214	ATCTATGATCGCCATCCTG		58	21414083	21414103	CATCATTTGAATGACGAGGTC		59	NA	
Drosophila melanogaster	50	CG10585	FBgn0037044	FBtr0078287	1	1	1	158	3L	21021858	21021876	ATTGATAGTGCTCCTGGTG		59	21021998	21022195	TTAACCACGCTATTGTGCA		59	NA	
Drosophila melanogaster	50	CG33286	FBgn0053286	FBtr0113459	2	1	1	80	3L	20966343	20966361	GAGGAAAGCCAGTACTCTG		59	20966085	20966301	GAGATTTATTTCGAACGGCTG		59	NA	
Drosophila melanogaster	50	CG10587	FBgn0037039	FBtr0078333	3	1	1	83	3L	20955089	20955107	AGAAACTATTGCGTACGGT		59	20954871	20955042	CTGTTAAATGAACCGTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7757	FBgn0036915	FBtr0074891,FBtr0074892	2	2	2	61	3L	19904573	19904594	AGCCATAACCAACCTTATAGAG		59	19904616	19904688	GTTTCAAGGGCTCATTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15881	FBgn0036909	FBtr0074879,FBtr0074880	2	2	2	73	3L	19799699	19799718	TACGGATAACCAGTTTAGGG		58	19799807	19799825	TGATGTCCTCGACATTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	LCBP1	FBgn0036901	FBtr0074955	1	1	4	60	3L	19685850	19685868	AACTTTGCGATTGGAAGTC		58	19685469	19685828	TTGGTACATTTACTCTCGAGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075009	3	1	11	104	3L	19296135	19296224	CGATCAGGACTGTTTACCT		58	19296049	19296069	ATATTGGTCTCTTCCCAAGTC		59	NA	
Drosophila melanogaster	50	CG6812	FBgn0036843	FBtr0075025	2	1	1	239	3L	19058257	19058278	GAGATAATCAATGGCATAGAGG		58	19058478	19058562	CATGAAGCAAAGGAAGCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Acp76A	FBgn0015586	FBtr0075038	2	1	1	164	3L	19044274	19044295	CCCATATTCAAGGAGAAATTCG		59	19044062	19044149	TTCTAAACGGAGAATGGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3819	FBgn0036833	FBtr0075048	3	1	1	65	3L	18914779	18915057	GCTGGTTGTTCAATTAAGATCC		59	18914735	18914753	CGATTTAATCAGCAGAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	skl	FBgn0036786	FBtr0075119	1	1	1	207	3L	18432804	18432822	GTGGACTTTGAAGGACCTC		59	18432615	18432633	GTTGTATTTGAACGGTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Grd	FBgn0001134	FBtr0075139	3	1	1	133	3L	17822746	17822764	GTTACTGGACAATCTGCTG		58	17824281	17824668	TCGAGTAGGTCATATCGAC		57	NA	
Drosophila melanogaster	50	CG32186	FBgn0052186	FBtr0075172	3	1	1	81	3L	17788550	17788720	GAGTCAAGGTTCTCATCTG		57	17788487	17788506	TCCAGTATTAGTCTCCACAG		57	NA	
Drosophila melanogaster	50	CG13031	FBgn0036655	FBtr0075319	3	1	1	96	3L	16718002	16718075	GTTGATTCTCGTATCCCTG		57	16718134	16718153	ATAGAGTCCGAAAGTAGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5222	FBgn0036570	FBtr0075495	2	1	1	103	3L	16097460	16097478	TAACCATGTGTTCTCCGAG		58	16097318	16097336	CGATAAAGTGAACAGCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	AGO2	FBgn0046812	FBtr0075560,FBtr0075559	3	2	2	87	3L	15551210	15551360	AAGTGACTGTGACAGATCG		59	15551409	15551429	GATTTAAGGTCAATGGTCGAG		58	NA	
Drosophila melanogaster	50	RecQ5	FBgn0027375	FBtr0100362,FBtr0075715,FBtr0075714	1	3	3	81	3L	14621498	14621575	GATGGAAGCTTAGGAGATGG		59	14621436	14621457	GATCGTTGTTTATCATCTGCAG		59	NA	
Drosophila melanogaster	50	CG10749	FBgn0036328	FBtr0075871	2	1	1	60	3L	12965870	12965888	CATTCGAGGGTAAGAATGG		57	12965910	12965930	GGTATCACCACTATATCAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10654	FBgn0036294	FBtr0075971	3	1	1	68	3L	12499567	12500328	TGAGGAAGTCTACGTAATAGAG		58	12499520	12499539	GAAATGGATAGCTTCTCCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gap69C	FBgn0020655	FBtr0075981	3	1	1	102	3L	12409095	12409385	CCTCGACAAAGATTAAAGAGG		58	12408938	12408956	TTATTCCAACCTCGTTTGC		58	NA	
Drosophila melanogaster	50	CG5718	FBgn0036222	FBtr0076069	1	1	1	61	3L	11916171	11916189	AAGGACATCAAGACAACCG		59	11916128	11916146	TCTAGCGTCTCAACTAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6718	FBgn0036053	FBtr0076362,FBtr0076363,FBtr0076365,FBtr0076364	3	4	4	106	3L	9854428	9854506	TGACTCCAATTAACAACCGA		59	9854341	9854359	AAATGCGCGGAAATATGAG		58	NA	
Drosophila melanogaster	50	CG3891	FBgn0035993	FBtr0076504	2	1	1	61	3L	9434203	9434224	GCTGCAGTCAATAATATAAGCG		59	9434163	9434181	CTGTTCGTATTCGTTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17352	FBgn0035880	FBtr0076675,FBtr0076676,FBtr0100664,FBtr0113154,FBtr0076674	1	5	5	199	3L	8349037	8349118	CTACTGCCTATAGAAGCTCG		59	8348857	8348875	CGAGAACTGGATATGCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32369	FBgn0052369	FBtr0076784,FBtr0076783	1	2	2	256	3L	7772127	7772145	CCAAGGTGGAGTACATCTG		59	7771828	7771907	AATGTCCACCTTTAGTTGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG8600	FBgn0035765	FBtr0076883	2	1	1	241	3L	7327666	7327685	ATTTCACTGAGCTGAAGGAC		59	7327372	7327390	TACTTAGATGTCGCTCTCG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG34030	FBgn0054030	FBtr0100085	3	1	1	96	3L	7067833	7067942	CATTGTAGCTTACTGTCATGC		59	7067757	7067777	GGGAATAAACGATCCAATCAG		58	NA	
Drosophila melanogaster	50	CG14823	FBgn0035734	FBtr0076906	2	1	4	204	3L	7059753	7059771	CATCAATCTCAAGGATCGG		57	7060660	7060678	TTGTTATCGTCGAGGTCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13293	FBgn0035677	FBtr0077050	1	1	1	130	3L	6080590	6080608	CAAGTTGTGGAAGTTCCAG		58	6080699	6080781	CGCTGGTTCTTAAGTAATAGTG		58	NA	
Drosophila melanogaster	50	nAcRbeta-64B	FBgn0000038	FBtr0073300	2	1	2	68	3L	4429770	4429790	GCCGTTATGTAATCGTAAAGG		59	4429820	4429838	CGGTTAGCAGAGTTAACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11582	FBgn0035525	FBtr0073241	2	1	1	60	3L	4283213	4283232	TGGAATAAGTGTCGACAGAC		59	4283172	4283190	CATGAAACCACCTGTAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13802	FBgn0035330	FBtr0113127,FBtr0072886	3	2	2	60	3L	2299266	2299774	AAAGCTGAGTGACCTTATGG		59	2299797	2299815	CAGGATGAAGTTGATGCTC		58	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13931	FBgn0035258	FBtr0072802	3	1	1	78	3L	1701475	1701493	TTCAATCACTACTCGCGTC		59	1701415	1701433	GGTCTACAAAGTCGTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7970	FBgn0035252	FBtr0072762	3	1	1	235	3L	1653240	1653320	CAAATCCATTACGGCATGC		59	1653519	1653537	AAATCGGAGCATAGACCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18170	FBgn0035239	FBtr0100190,FBtr0100191	1	2	2	94	3L	1603319	1603339	TTCTTCAAGGGAATGGTAGAG		59	1603395	1603471	GTTGTGGTTCCTATCGAGG		59	NA	Nonspecific
Drosophila melanogaster	50	mthl10	FBgn0035132	FBtr0072573	2	1	2	117	3L	335072	335090	GACAAGGGATGGTCTAAGC		59	333639	334992	ATCTGTTTGTGATCAAGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	RhoGEF3	FBgn0035128	FBtr0089651,FBtr0089654,FBtr0089653,FBtr0089652	1	4	4	81	3L	302290	302367	CATTTGTGATGGTTACCTGC		59	302411	302429	GTTGGAGAAGATAAGCCGA		59	NA	
Drosophila melanogaster	50	CR30066	FBgn0050066	FBtr0087563	3	1	1	60	2R	10177809	10177828	AAACACTGAACGACAAATCG		59	10177768	10177788	CCGTGAACGTGAATAATATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL19	FBgn0002607	FBtr0072406,FBtr0072405	1	2	2	131	2R	20856733	20856995	TGAGTTCTCTAAAGCTCCA		57	20856554	20856572	TAAGCTTGCGAATGTTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	egg	FBgn0086908	FBtr0112777	2	1	1	80	2R	20665802	20665874	ACTATGTGCATGAAGTTCCA		59	20665741	20665762	TCTTAACAGCGTAGTATGTCTC		59	NA	
Drosophila melanogaster	50	CG4563	FBgn0035006	FBtr0072355	2	1	1	195	2R	20339840	20339925	GATCTATGTACCTGCTTCCC		59	20339606	20339624	GGTAATCGAGAATCCGGTC		59	NA	
Drosophila melanogaster	50	Sox14	FBgn0005612	FBtr0072158,FBtr0072157	1	2	2	178	2R	19868267	19871083	GAACCAAGAAACATTCGCC		59	19871225	19871243	TATGTACGGCTGCTTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18128	FBgn0034898	FBtr0072094	1	1	1	92	2R	19607155	19607173	AAGTACGGACTAATCTGCG		59	19607081	19607099	GAAGTTGGGTATGTCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13542	FBgn0034809	FBtr0071987	3	1	1	184	2R	18897198	18897216	GATGAGGATGAAGTGGAGG		59	18896681	18896699	AAATTGCACATGACCTGAC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30190	FBgn0050190	FBtr0113362,FBtr0113363,FBtr0071950	3	3	3	120	2R	18817485	18817503	TGAGGCCAAGAAATCAGAC		59	18817586	18817724	ATGTTGTAGTTGAAATCGCC		58	NA	Nonspecific
Drosophila melanogaster	50	stl	FBgn0086408	FBtr0113110,FBtr0071885	1	2	2	80	2R	18703125	18703200	ACCATCACATTCAGATATCTCC		59	18703241	18703259	TTGCTACTCAGTTCGTCTG		59	NA	
Drosophila melanogaster	50	CG13516	FBgn0040658	FBtr0100554	2	1	1	78	2R	18557546	18557655	TCTGTTTGGTCGGATTCTG		59	18557697	18557715	CAATAGTGGTTTCCAGTGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13502	FBgn0034692	FBtr0113103	1	1	2	62	2R	17974261	17974279	GATCAAGAATGCCAATCCC		58	17974055	17974235	CTATTCAGCTCAAGAGCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	comr	FBgn0034667	FBtr0071735	2	1	1	60	2R	17752646	17752664	GGATTCGCAATACGATGAC		58	17752604	17752623	GTCGAAGTAATCCTCTTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18735	FBgn0042098	FBtr0071744	1	1	1	60	2R	17686279	17686298	TAAATGGCTTCTACCATCGT		58	17686238	17686257	CTATCCTGACGATTATGCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	swi2	FBgn0034262	FBtr0086889	1	1	1	82	2R	13579494	13579514	CGAACTAATATGCACAGATCG		58	13579373	13579450	ATTGTCTCTTCAGCTCCAG		58	NA	
Drosophila melanogaster	50	CG4866	FBgn0034232	FBtr0086940	3	1	1	103	2R	13406107	13406125	GGAGTTTCCAATGATCAGC		58	13406192	13406267	GACATTCGAAGTTTCACCA		57	NA	
Drosophila melanogaster	50	CG34189	FBgn0085218	FBtr0112382	2	1	1	60	2R	12642090	12642109	GAGGATCATATCCTGAACCA		58	12642131	12642150	TCCATATGTACTTCATGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34457	FBgn0085486	FBtr0112763	2	1	1	84	2R	12558812	12558888	GAAGATATACCTAGCAATTCCC		57	12558932	12558951	TTTGGATCAGAACATTCTCG		57	NA	
Drosophila melanogaster	50	CG33459	FBgn0053459	FBtr0089859	2	1	1	82	2R	12376128	12376219	GACAGTTGAATATACAGTTGCC		59	12376262	12376280	AATCCACAAGCCAATACCA		59	NA	
Drosophila melanogaster	50	Cyp6a9	FBgn0013771	FBtr0087457	1	1	1	76	2R	10767788	10767806	TGGAAAGTACAACGGAGAG		58	10767677	10767748	GGGTTTCCGATATAACCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsc70-5	FBgn0001220	FBtr0087568	2	1	1	75	2R	10141098	10141117	ATAGTCCACGATACTGAGAC		58	10140982	10141060	TCTTTAGCTTCTCGCACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13337	FBgn0033863	FBtr0087626	1	1	1	60	2R	9553683	9553701	TATATGCAAAGCACAGGAG		57	9553724	9553743	ACTAAGGCAGTCTTCTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4643	FBgn0043010	FBtr0087762,FBtr0087763	3	2	2	77	2R	9108960	9108978	AAGAACTACGAGTTCCTCG		58	9108838	9108856	GTAGACAGCGGATACTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	sca	FBgn0003326	FBtr0087855,FBtr0087856	1	2	2	158	2R	8687287	8687506	AAGAATAAGCTCACCCACC		59	8687628	8687646	GATAATGGCCTCGTACTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG8594	FBgn0033755	FBtr0087826	3	1	1	95	2R	8460031	8460050	CGAATAGGAACATCAACAGC		58	8460108	8460210	CTTCGTAGTCCAAGCTCTC		59	NA	
Drosophila melanogaster	50	CG8818	FBgn0033751	FBtr0087941	2	1	1	206	2R	8405342	8405360	AAGAGCTAGTGGAGAGGAG		59	8405040	8405058	ATTCACTGCAGGATTTGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12370	FBgn0033744	FBtr0087936,FBtr0113075	2	2	2	121	2R	8372560	8372633	TGCAAGTGATAACCACAGAG		59	8372775	8372793	CAGCGTGTACAGATAGAGG		59	NA	
Drosophila melanogaster	50	CG30037	FBgn0050037	FBtr0088049	1	1	1	60	2R	7867328	7867346	ACACCTACAACAACTTGAC		57	7867286	7867304	CAACTCTGGGTGATATGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12914	FBgn0033499	FBtr0088334	2	1	1	114	2R	6136262	6136280	ATATTTGTCCTCACCTGCT		58	6136358	6136459	AGACTATGACAAACACGCT		58	NA	
Drosophila melanogaster	50	lectin-46Cb	FBgn0040092	FBtr0088475	2	1	1	182	2R	5703154	5703224	AAAGATGAACTGGTTTGGC		58	5703370	5703388	TTGCTGATGTACTGGAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rep2	FBgn0028408	FBtr0112930,FBtr0088597	1	2	2	118	2R	5184940	5184958	AGGATGGCGAATACTTTCG		59	5185039	5185788	CGGTATAGCTGATATGGCAG		59	NA	
Drosophila melanogaster	50	CG8170	FBgn0033365	FBtr0110892,FBtr0088665	3	2	2	124	2R	4907046	4907121	GTACCTGATTGGTGTGGTC		59	4906940	4906958	AGATGTTCATCGTGAGTCC		59	NA	
Drosophila melanogaster	50	rgr	FBgn0033310	FBtr0088692	3	1	1	80	2R	4496832	4496850	GGTACTTTGAGAGGATGGA		57	4496894	4496972	TCTCATTGGAAATCTTGGC		57	NA	
Drosophila melanogaster	50	CG8712	FBgn0033258	FBtr0088823,FBtr0088822	3	2	2	62	2R	3985319	3985340	CTCCAAGTCTATAAGTTCAGCT		59	3985278	3985297	GGCTGTGATACCTCATTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CSN4	FBgn0027054	FBtr0088859	1	1	1	111	2R	3860591	3860609	GATCGCTCGACTCTATCTG		59	3860682	3860761	ATATAGAACCTGCAACTCCTC		58	NA	
Drosophila melanogaster	50	ubl	FBgn0022224	FBtr0086211	1	1	1	82	2R	2697754	2697772	AAGCACGAGAAGATTGTCC		59	2697625	2697711	CCATCGTGAATTTCATAGTCAG		59	NA	
Drosophila melanogaster	50	SCAP	FBgn0033052	FBtr0086027	1	1	1	98	2R	1914898	1914916	TAAGACTAGCCCATCAGCA		59	1914762	1914836	TGAGGCAATACACCTTGAG		59	NA	
Drosophila melanogaster	50	CG41443	FBgn0084008	FBtr0111279	1	1	1	89	2R	1142636	1142654	ACGTGGACGTAGATTTGTG		59	1142705	1142725	GACGAACAGATAAGTCATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-640g	FBgn0083020	FBtr0113554	1	1	1	65	2L	20421818	20421836	TTCGTGTCTACAATGCTCC		59	20421863	20421883	GGAAATATAAGACTGCTTCGG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41485	FBgn0084045	FBtr0111242	1	1	1	61	2L	22834394	22834412	CTTTGGTTCTGGGAAGAGG		59	22834437	22834455	CCAAGGATGTTATTGTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dap160	FBgn0023388	FBtr0081503,FBtr0081504	2	2	2	80	2L	21137683	21137769	GAACAGATCTTGGACAAGG		57	21137621	21137639	ATCGTCCTTATCAAACGAC		57	NA	
Drosophila melanogaster	50	CG31798	FBgn0051798	FBtr0081200	2	1	1	272	2L	19395004	19395082	TAATAGCCGAAATTGGCAG		57	19395376	19395394	TATAGAGTCGGGATAAGCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG10341	FBgn0032701	FBtr0081097,FBtr0113042	2	2	2	83	2L	18698971	18699048	CAACAGAAGCTACGAATGC		59	18699092	18699113	CTTGTGTTGACTCATTTACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	qua	FBgn0003187	FBtr0080997,FBtr0080996	3	2	2	100	2L	17487330	17487412	ATTACGGCAAGAACTTCCA		59	17487248	17487266	GATTAGAGCCGATCCTTCG		59	NA	
Drosophila melanogaster	50	CG4103	FBgn0028925	FBtr0080727	1	1	1	61	2L	15009376	15009450	GCTCTCAATGTGATGAATGC		59	15009334	15009353	AGGACAATATCCCGAAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15286	FBgn0028531	FBtr0080625	2	1	1	60	2L	14339124	14339144	CGTAATGTCATTGTGGAAGAG		59	14339165	14339184	CATTGATGGTGAATGGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33640	FBgn0053640	FBtr0091617	3	1	1	67	2L	13528172	13528190	ATAACTATGCGCAGTTCCT		58	13528221	13528420	CTCGTCTATGTAGGTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pk34A	FBgn0028410	FBtr0080432	2	1	1	60	2L	13159815	13159836	GAATTATCTCCTGAATACGGCT		59	13159856	13159875	GAAACACGAGTTCAACAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	A16	FBgn0028965	FBtr0080427	1	1	1	105	2L	13019809	13019827	ATGAATCGAGAACGACGTC		59	13019654	13019674	CCTAATACCTAAGTAACCGCT		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Ced-12	FBgn0032409	FBtr0080330	3	1	1	100	2L	12099281	12099299	CAATGTCAACTTCTCGCAG		59	12099363	12099441	CCAACGCTAATATACCCGG		59	NA	
Drosophila melanogaster	50	bib	FBgn0000180	FBtr0079929	3	1	1	105	2L	9987720	9992265	CTTTATGGCGTAACTGTGC		59	9992334	9992352	TGAGGATGAATTCCACACC		59	NA	
Drosophila melanogaster	50	CG31712	FBgn0051712	FBtr0079896	2	1	1	60	2L	9935311	9935331	AGAGCAGAAGGTCATATTAGG		58	9935271	9935289	TTTCAGGGAGAACGATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yip2	FBgn0040064	FBtr0079876	1	1	1	108	2L	9916890	9916908	AACTGAATGTGAACGGAGG		59	9916980	9917057	TACTTTAGCTTCTTGCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13117	FBgn0032140	FBtr0079864	1	1	1	78	2L	9736915	9736933	AGAGCAATATCTACACGCC		59	9736975	9736993	AAATTGCTCAACGTTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3759	FBgn0032116	FBtr0079807	2	1	1	80	2L	9420816	9420834	TACTCTTAACAGCACTGCT		58	9420876	9423310	GGCAGATGGTATTATCATCTG		58	NA	
Drosophila melanogaster	50	CG9515	FBgn0032077	FBtr0079791	1	1	1	80	2L	8942553	8942572	ACGTATACTTTGGCGATCTG		59	8942436	8942511	AAGCACCAGCTTTATCTAGG		59	NA	Nonspecific
Drosophila melanogaster	50	Glt	FBgn0001114	FBtr0079727,FBtr0079726,FBtr0079725	3	3	3	281	2L	8674101	8674119	ACCATCCATTAACCCATCC		59	8674363	8674775	TGATCATAGATTCGCGACAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13394	FBgn0032037	FBtr0079717	1	1	2	182	2L	8389265	8390107	ACTTAGCTCCCAATATGCG		59	8389101	8389119	GAACTCCTTCCTCGAATGG		59	NA	
Drosophila melanogaster	50	Spn2	FBgn0028987	FBtr0079624	1	1	1	114	2L	8240743	8240762	GACTTCAAAGATCTGGTCGA		59	8240593	8240666	AAAGTAAAGCTGTTGCAGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG7102	FBgn0031961	FBtr0079559	3	1	1	80	2L	7884707	7884726	GAGTGCGTTAAGACTAATGC		59	7884573	7884666	CAAGCAGAAATAGTCTGAGGA		59	NA	
Drosophila melanogaster	50	Rack1	FBgn0020618	FBtr0079565	2	1	1	101	2L	7825962	7825980	GAACCTGTACACTCTGGAG		59	7825879	7825897	CAGATCTTGATCGAGGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31642	FBgn0051642	FBtr0079199	1	1	1	60	2L	6119521	6119540	CATCATCCTCACTACATCGG		59	6119561	6119581	GCTGTATTAGTACCAGGAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14024	FBgn0031697	FBtr0079082	1	1	1	138	2L	5313078	5313276	TATATTAGCTGGCTACGATGTG		59	5312961	5312979	CACAAAGAGAAAGGACAGC		58	NA	
Drosophila melanogaster	50	CG3887	FBgn0031670	FBtr0079000	3	1	1	122	2L	5011327	5011421	CCTTTACTGCTACTCCTGC		59	5011507	5011525	TAATAGTTTAGACCCGGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k05819	FBgn0022153	FBtr0077433,FBtr0077432	3	2	2	87	2L	4396832	4396851	AAACAGATTGGATTCACCGA		59	4396901	4396981	CAACATCAGGTTGCAAGTG		59	NA	
Drosophila melanogaster	50	Traf1	FBgn0026319	FBtr0077429,FBtr0112925	3	2	3	127	2L	4372534	4378919	CAGATTATCTATCCCGGTCC		58	4379009	4379027	TTACAGGCGTTGAGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305	1	10	10	81	2L	3624268	3624289	GCTAATTTCCAATCTAGACGAG		58	3623866	3624229	GAATTCCTCGTTGATCTTTCTG		59	NA	
Drosophila melanogaster	50	CG3488	FBgn0014906	FBtr0077576	3	1	1	128	2L	3167131	3167213	AACAGGAGGATGACATCAC		58	3167305	3167323	CAATGTGATTTAGCACCGC		59	NA	
Drosophila melanogaster	50	CG3523	FBgn0027571	FBtr0077659	3	1	1	85	2L	3067107	3067195	GTGGAAACGATCAAGAAATCC		59	3067242	3067260	GTCTTGAGCTTCAGAGTGG		59	NA	
Drosophila melanogaster	50	Lsp1beta	FBgn0002563	FBtr0078025	1	1	1	96	2L	898846	898864	CTCTTCGAGATCGTCTACC		58	898924	899010	GAGTGTAGTAGGACTCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2807	FBgn0031266	FBtr0078068	3	1	1	60	2L	570338	570357	ATTCTTCCGTTGCTTATGTC		58	570377	570398	CCTTCACTAATAAATGACGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mt:tRNA:D	FBgn0013691	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Nipsnap	FBgn0030724	FBtr0074258,FBtr0074257,FBtr0074259	2	3	3	278	X	15965372	15965391	ATCTTAGCTTGATGCAGGAG		59	15964887	15965071	GCAGAGATTTGTAACACCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG6299	FBgn0030641	FBtr0074033,FBtr0074032	2	2	2	139	X	15360379	15360398	TCATATGCACCTTCTTCGAG		59	15360497	15360584	GTAGATGATCTTGATTGTGCTC		58	NA	
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0100303,FBtr0100302	2	2	10	158	X	11856301	11856320	ATTCACCGGAATGTTTAGTG		58	11848301	11856054	TTGATTGAGTTCGAATCCC		57	NA	
Drosophila melanogaster	50	CG34348	FBgn0085377	FBtr0112557	3	1	1	137	X	11234653	11234671	TCTGGACTATTCGCTATGG		58	11234772	11237290	ATTATTACCTGCCTGTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	Dlic2	FBgn0030276	FBtr0073441,FBtr0073443,FBtr0073442	1	3	4	94	X	11049247	11055097	AAAGGAGAACCTATGGTCG		58	11055153	11055173	TGTCGCCTAATACTAGTACAG		58	NA	
Drosophila melanogaster	50	CG1628	FBgn0030218	FBtr0071510	3	1	1	122	X	10493310	10493328	CATCAGAGGCTTCTATCGC		59	10492950	10493226	TCTTTGGATTGATCATCCCTG		59	NA	
Drosophila melanogaster	50	CG12081	FBgn0030053	FBtr0071218	3	1	1	73	X	8483604	8483622	TACATCTTCGGTGGATTCG		59	8483659	8483677	ATGGTGTCCAGATTAAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pod1	FBgn0029903	FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966	1	5	6	106	X	6701674	6702856	CAATTATTCCACGTTTGGGT		58	6702925	6702943	GATATTCTCGTGGGATCCC		58	NA	
Drosophila melanogaster	50	CG12236	FBgn0029822	FBtr0070825,FBtr0070826	3	2	2	79	X	5803548	5803566	GGATGAGCAGACCATAGTG		59	5803683	5803702	CAATGTAATCGGGTATGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15778	FBgn0029788	FBtr0070803	2	1	1	76	X	5578109	5578128	TTATTATCGCGATACGGAGC		59	5578238	5578256	TATTGGCCATTTGGTAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fcp3C	FBgn0000644	FBtr0070542	1	1	1	80	X	3067747	3067766	TTGGATCATATGTTTCCCTG		57	3067614	3067704	CAGATGTTGTACGATCGTC		58	NA	
Drosophila melanogaster	50	CG40245	FBgn0058245	FBtr0113844	1	1	1	70	U	688210	688228	TTCAATGTATACACGGCTC		57	688158	688176	CAAACTCGTTCCAATCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0089226,FBtr0089223	3	2	5	194	4	1043035	1043053	GATGATGTCCTCTTTGCTG		58	1040633	1042878	TTGCAGTTTCGTTAGAACAC		58	NA	
Drosophila melanogaster	50	Slip1	FBgn0024728	FBtr0089090	2	1	1	80	4	685866	685886	TTAGAAACTCAGATAGCCAGG		58	685928	686591	GTCATCATCGTCTTCAGGG		59	NA	
Drosophila melanogaster	50	CaMKI	FBgn0016126	FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065	1	6	7	94	4	467853	470559	TTTGAGAAGGTTCAGTGCA		59	470887	470908	CATACGTTTCTAAGAGTTGCAC		59	NA	
Drosophila melanogaster	50	CG12063	FBgn0039851	FBtr0085790	3	1	1	137	3R	27331592	27331611	GATAAGTTCGCCTTCAATGG		58	27331710	27331956	AATTATGAAGCCATAGCCGT		59	NA	
Drosophila melanogaster	50	scrib	FBgn0026178	FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0100181,FBtr0085019	3	6	7	200	3R	22404542	22404830	TTCATATCGCACATTGTGC		58	22404993	22405374	TAGCACTTCCTGAAATCCTG		59	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625	2	8	17	92	3R	20521093	20521111	GGACATTAAGGACGAGACG		59	20521837	20528752	GTGATATCACCTAAGTCATCGA		59	NA	
Drosophila melanogaster	50	CG10881	FBgn0038796	FBtr0083885	1	1	1	65	3R	16234657	16234675	CATGACCGAGACTGATCTC		59	16234703	16234722	GCCAAATACATCTTGGTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	htl	FBgn0010389	FBtr0083548,FBtr0083550,FBtr0083549	1	3	3	60	3R	13872690	13872708	ATATCTTCGTCTTTGGCGG		59	13872648	13872666	GCATAGAACACAAACAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	1	15	15	89	3R	7811197	7811279	CCCAAGAATAACATGCTTAAGC		59	7811129	7811148	CAGCTGTGTAAGATTAGCCT		59	NA	
Drosophila melanogaster	50	CG4820	FBgn0037876	FBtr0113221	3	1	2	152	3R	7043274	7043350	GTGAGACATGAAAGGGAGG		59	7043522	7043540	ACTGGAAGAGTTGATGTGC		59	NA	
Drosophila melanogaster	50	CG4509	FBgn0037840	FBtr0089880	1	1	1	80	3R	6671487	6671574	GTTCGCATCAAGCATAACC		59	6671616	6671636	GTCGTTGATCAGATTAGTCCT		59	NA	
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190	3	8	8	80	3R	5954404	5954422	TCTCCAGGGATTACTTGAG		57	5954228	5954360	ATTCATGAACCGGATAGGT		58	NA	
Drosophila melanogaster	50	mura	FBgn0037705	FBtr0082116,FBtr0082117,FBtr0082118	3	3	3	84	3R	5367294	5367414	GGAACTTGAATAACCACTTTGG		59	5367231	5367250	AAGTTGTACGAAGAACCCTC		59	NA	
Drosophila melanogaster	50	CG11718	FBgn0037585	FBtr0081852	3	1	1	97	3R	4192159	4193216	TGATCAGAAATCGAGTTCCC		59	4192081	4192099	GATAGTGCTCGTGGAACTC		59	NA	
Drosophila melanogaster	50	CG1104	FBgn0037467	FBtr0081643,FBtr0081644	1	2	2	137	3R	2897573	2897645	GTATCACGATTTGGTCCTG		57	2897454	2897472	TTAGAAATCGATGCACGTG		58	NA	
Drosophila melanogaster	50	CG1193	FBgn0037375	FBtr0078628,FBtr0078627	1	2	2	189	3R	1611780	1611995	AATACTCCAGGAAGCAGTG		58	1612148	1612166	GTATTTCGAGGTCAGGGTC		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-110	FBgn0083057	FBtr0113600	2	1	1	60	3L	831923	831942	AAATCGTGATCACTGAACCA		59	831882	831900	CAAATCAGTGAAGTGTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3529	FBgn0035995	FBtr0076461	3	1	1	108	3L	9442915	9443129	GGTAAGTAAATCGACGAAAGAG		58	9443360	9443379	GAATTTGTCAAACTCCGAGC		59	NA	
Drosophila melanogaster	50	CG8209	FBgn0035830	FBtr0076753	3	1	1	279	3L	7970256	7970276	AGTTGGAGATGAAGAAGATCG		59	7970573	7970591	TTGACGTTGAAGGTTTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Scsalpha	FBgn0004888	FBtr0073151	2	1	1	74	3L	3817925	3817943	GTCATTGTGACCAGGAGTC		59	3817981	3817999	TTACACTAACTCCAGACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12034	FBgn0035421	FBtr0073043	1	1	1	60	3L	3220113	3220133	GAGATAGCCGAATACAAACTG		58	3220155	3220173	AGAAGCTAAATTTCTCGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3880	FBgn0035057	FBtr0072371	3	1	1	176	2R	20649505	20649523	GCATCGATTACAACATGCT		58	20649663	20649737	CAGACCACTGATCAAATCG		58	NA	
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	3	8	8	81	2R	19817553	19817571	GGATATCATGGAGAAGCCC		59	19817426	19817508	TCCAATAGCCATGTAACGG		59	NA	
Drosophila melanogaster	50	egl	FBgn0000562	FBtr0114586	1	1	1	80	2R	19623883	19623901	CTCAAGGGCTACTACAAGG		59	19623759	19623840	GGAGTCACTTTGATCTTTGC		59	NA	
Drosophila melanogaster	50	CG3500	FBgn0034849	FBtr0072038	3	1	1	243	2R	19244588	19244606	ATCAGCTTCACGATCTTCG		59	19244178	19244381	TAAAGTAAGCCAGCACCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Obp58c	FBgn0034769	FBtr0071920	1	1	1	95	2R	18593777	18593795	GTTCACTGAAAGGTTTCCC		58	18593640	18593658	ATGGAGGTATTCTCTTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG16926	FBgn0040732	FBtr0086499	2	1	1	72	2R	15388240	15388258	AGATAAGGGTTCCGTTGAC		58	15388110	15388129	CTTGTCGTTGTACTTGTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	hts	FBgn0004873	FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086548	1	5	6	87	2R	15295689	15295707	TTCGATAACGTCACAGACG		59	15295552	15295639	TGTCGGTATATTCACCATGC		59	NA	
Drosophila melanogaster	50	CG14502	FBgn0034321	FBtr0086756	2	1	2	60	2R	14181433	14181451	AGTTGATCAATGCAATGGC		59	14181537	14181555	ATAGGTTTCAATGGACAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	mbl	FBgn0053197	FBtr0086994	1	1	4	126	2R	13249486	13249504	AATTCTCTGGCATGGTACC		59	13249593	13260591	TGTCCAGTAAATGAGACTGG		59	NA	
Drosophila melanogaster	50	CG15863	FBgn0033467	FBtr0088441	3	1	1	63	2R	5846827	5846846	GTTCTGGTGAACAAACATCG		59	5846783	5846801	GCTTAAGATGTGTACCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pgi	FBgn0003074	FBtr0088679,FBtr0088681,FBtr0088680	1	3	3	93	2R	4799447	4799529	AGAAGAATGCTCCTGTTATCC		59	4799374	4799392	TACTGATCGTAGGGAAGGA		58	NA	
Drosophila melanogaster	50	CG41121	FBgn0069930	FBtr0111251	1	1	2	119	2L	22708255	22708273	GTAGTGATGTATCTCCGCT		58	22708356	22709162	GAACGTGGTCTAAAGAACG		58	NA	
Drosophila melanogaster	50	Hr39	FBgn0010229	FBtr0081481,FBtr0081480,FBtr0081479	3	3	4	154	2L	21256008	21256026	AAGATAACCCTATCGCAGG		58	21257042	21257115	AACTCTGTCGTATCTGACTG		58	NA	
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445	1	8	8	80	2L	20877196	20877214	CTGCAAGAAGATACCAGTG		57	20877069	20877155	GAAATATACTGGGTACTCAGTC		57	NA	
Drosophila melanogaster	50	CG9318	FBgn0032880	FBtr0081393	3	1	1	202	2L	20731947	20731965	ATCACCTTAGCATTTGCCT		59	20731709	20731781	AATGAGAAGACCACACCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	fbp	FBgn0032820	FBtr0081321,FBtr0081322	2	2	2	82	2L	19762541	19762561	AGTCATCCTATACCACATGTC		58	19762297	19762497	GTATTTGCCCTGTTTCTCC		58	NA	
Drosophila melanogaster	50	CG31857	FBgn0051857	FBtr0080380	2	1	1	61	2L	12516907	12516925	TCTCGCCAACGATATACAC		59	12516864	12516882	GGCACTATTTGGTATGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14921	FBgn0032345	FBtr0080227	3	1	1	84	2L	11121520	11121538	ACTCAATCGTCTGGTAACC		58	11121454	11121472	CTCAAAGAAGATGGGTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13102	FBgn0032088	FBtr0079766	1	1	1	80	2L	9012551	9012636	GTACAACTGGAATAACGATGTG		59	9012677	9012695	TTAAGTGCTAAGCTGCAGG		59	NA	
Drosophila melanogaster	50	CG17906	FBgn0032086	FBtr0079762	3	1	1	82	2L	8994953	8994971	CTGGATCTCACACTACACC		59	8995015	8995097	CTGGCATGGTTAATGATAGAG		58	NA	
Drosophila melanogaster	50	CG9967	FBgn0031413	FBtr0077799,FBtr0100648	3	2	2	123	2L	2309692	2310134	TTTCCTCAACGATTACAGCA		59	2309588	2309606	CTCCGGAGGATTATCATCC		58	NA	
Drosophila melanogaster	50	Ory	FBgn0046323	FBtr0113893	2	1	1	60	YHet	233544	233567	CTATCTCATATGCCTACTGTAGAG		59	233586	271130	GGTTTATACGCTGTTGCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14213	FBgn0031047	FBtr0074743	3	1	2	80	X	19533364	19533383	CATATGAATCCTCAGCAGCA		59	19533426	19533496	ATTGATCCACTGGTACACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	l(1)G0222	FBgn0028343	FBtr0074490,FBtr0074489,FBtr0074488	3	3	3	114	X	17468998	17469093	AGCCCAAGGAAATCATCTG		59	17468902	17468922	TTTGACTGGGATCTTAGTACG		59	NA	
Drosophila melanogaster	50	CG2061	FBgn0027498	FBtr0073429	2	1	3	189	X	10986739	10986819	AACTCGTATTTCGCTTCGT		59	10987088	10987107	AAAGGGATTCTTCAGGTAGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	sev	FBgn0003366	FBtr0073393	3	1	1	86	X	10972705	10972723	ACTTAGCCGATTACGACTG		59	10972571	10972657	CAAATCGGAACCTGTATTGTG		59	NA	
Drosophila melanogaster	50	fz4	FBgn0027342	FBtr0071018,FBtr0071017	1	2	2	77	X	7002382	7002400	CTTTCAAACGTCAGCAGTG		59	7002261	7002279	TGATTGCCTACGAAACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Parg	FBgn0023216	FBtr0070585	2	1	1	60	X	3564619	3564706	CAGACATCAACTTTAACAGGC		59	3564579	3564598	TTAAGCTTCTCCAGAACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-1377b	FBgn0083050	FBtr0113597	3	1	1	74	3R	26033319	26033338	TTTGCTGGAAGTTACATCCA		59	26033264	26033282	ACATTGTGGAGTGATAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18672	FBgn0040628	FBtr0085762	1	1	1	98	3R	27086878	27086896	ATCGGAACGAGAAGTACAG		58	27086955	27087033	CATTGTCCTTCCTAACAATAGC		59	NA	
Drosophila melanogaster	50	dco	FBgn0002413	FBtr0085744,FBtr0085743	1	2	3	221	3R	26884331	26886097	GAACCCTTCGAATACAAAGC		59	26883518	26883536	GATCCCGATCCTATCTTGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG33920	FBgn0053920	FBtr0091924	2	1	1	64	3R	26870353	26870371	TTTCATTAGGCCCTTCACC		59	26870250	26870268	TTTCGATCACGAGATCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10514	FBgn0039312	FBtr0084864	3	1	1	119	3R	21104577	21104597	CACAAGATATTCACTGAGACG		58	21104416	21104496	TACCGTAGAATGCAAAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dad	FBgn0020493	FBtr0100160,FBtr0083394,FBtr0083393	3	3	3	82	3R	12894609	12894696	TTTGAAACCAATAGGGCTG		57	12894741	12894760	TTAATGCTGAAGTAGTCGAC		57	NA	
Drosophila melanogaster	50	CG4520	FBgn0038355	FBtr0083167	2	1	1	113	3R	11571115	11571133	CGTGATGAGATCGGTATCC		59	11571210	11571285	TAATGGGAGTAACGTGCTG		59	NA	
Drosophila melanogaster	50	Act88F	FBgn0000047	FBtr0083143	2	1	1	62	3R	11267216	11267234	TCTGTATGCCAACTCTGTG		59	11267260	11267339	ATACGATCGGCAATACCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	PGRP-LB	FBgn0037906	FBtr0082398,FBtr0082396,FBtr0082397	3	3	3	202	3R	7279014	7279184	AGATTGGAGAACCGAACTG		59	7278830	7278848	CTTCGGTGTCGTTTATGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG4757	FBgn0027584	FBtr0082339	2	1	1	96	3R	6988486	6988504	TCCTTTGTTGAAGCGAGAG		59	6988564	6988638	TTTGTTGTGAGGATCACCC		59	NA	
Drosophila melanogaster	50	CG16817	FBgn0037728	FBtr0082082	1	1	1	63	3R	5504316	5504335	GCAATGACTTGATCTACGTC		58	5504361	5504450	TCCGTAACTTTGTGTTCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	Paps	FBgn0020389	FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885	1	6	6	93	3L	19853427	19853509	TAGACAGCATGGAGATCCT		59	19853566	19853584	AACTCATCCTTCCTCTTGG		58	NA	
Drosophila melanogaster	50	CG18223	FBgn0036832	FBtr0075070,FBtr0075071	3	2	2	61	3L	18913133	18913153	TCATATCGAGAACCTACATCC		58	18913033	18913110	TACGATCTTGCGCTTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7739	FBgn0036509	FBtr0075596	2	1	1	60	3L	15555597	15555616	AATACCACCGAACTGAAGTG		59	15555556	15555576	CCATTACCTCTCCTTTACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	BobA	FBgn0040487	FBtr0075673	1	1	1	60	3L	14939103	14939122	AGAAGAAATCTCTTACCGGC		59	14939062	14939081	TTCTTGATGGTCTTCAGCAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10638	FBgn0036290	FBtr0089321	1	1	2	96	3L	12492359	12492433	TTTGGTCACTAAGCTTTGG		57	12492281	12492299	ATCGATATAGTCCAAGCCA		57	NA	
Drosophila melanogaster	50	CG14154	FBgn0036093	FBtr0076258	3	1	2	86	3L	10635692	10635813	GGAGATGATGTTCTTAACGC		58	10635862	10635880	AATTGGGTTAGATTGGCGT		59	NA	
Drosophila melanogaster	50	CG6640	FBgn0036068	FBtr0076313,FBtr0076312	1	2	2	216	3L	10090284	10090852	GCTGGTCTCATCTTTATCTC		57	10090026	10090044	CAATAACCAATCCACCGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6694	FBgn0035900	FBtr0076656	1	1	1	98	3L	8501329	8501444	CATCTGTGTCAGCTTTCTG		58	8501249	8501267	AAATAGTACCGACAGACGG		58	NA	
Drosophila melanogaster	50	Cpr60D	FBgn0050163	FBtr0072334	2	1	1	126	2R	20550739	20550816	TATAGCCTTATCTTTGCCCT		57	20550632	20550650	TGATCTCATGCTGGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11414	FBgn0035024	FBtr0072307	3	1	1	82	2R	20451703	20451721	TCGTATGACATTGTACCCA		57	20451766	20451852	ACCTCATCAACCAATTTCTG		58	NA	
Drosophila melanogaster	50	CG34445	FBgn0085474	FBtr0112749	3	1	1	73	2R	18535595	18535613	AATTACTATGTGCCGTGCA		59	18535540	18535558	GAACGTCCAAAGTAACAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	qkr58E-2	FBgn0022985	FBtr0071828	1	1	1	91	2R	18305129	18305203	CACAGCTCCAAAGATTTCG		59	18305257	18305276	AGCATTTGTCTACTTAGGCT		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG34005	FBgn0054005	FBtr0100060	3	1	1	69	2R	13936048	13936123	AATGGCTAAGTTACAGTTGG		57	13936155	13936173	TAGGATTAAAGCCTGCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Acp53Ea	FBgn0015584	FBtr0087080	3	1	1	61	2R	12637670	12637754	TACTGGCTCTCGTATTTGTG		59	12637628	12637648	CAACCAATTCTCCCATATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aPKC	FBgn0022131	FBtr0110996,FBtr0110998,FBtr0110999,FBtr0110997,FBtr0110995,FBtr0087426	3	6	6	85	2R	10835448	10835466	TGCTCTATGAGATGTTGGC		59	10835324	10835401	CAGATAGTCCTCAGTGTTCTG		59	NA	
Drosophila melanogaster	50	CG12860	FBgn0033954	FBtr0087480	2	1	1	68	2R	10553764	10553782	GACATACCCTACAAGCCAG		59	10553714	10553732	CTTGTCATCCAAACGTACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8830	FBgn0033738	FBtr0087950,FBtr0087951	1	2	2	61	2R	8321598	8321616	TGAATAGCGTACTTCAGGC		59	8321297	8321315	GATAAGCAGGATTTGCCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	skpB	FBgn0026176	FBtr0088020	2	1	1	64	2R	8026992	8027010	GAATGACTTTCTGCCACAG		58	8026946	8026965	ATTTATCCTCACACCACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	thetaTry	FBgn0011555	FBtr0088162	2	1	1	60	2R	7229892	7229911	TATAACTCGAAGACCATGGA		57	7229851	7229869	CCTTTACCTTCTCGTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9080	FBgn0033593	FBtr0088191	1	1	1	189	2R	7129653	7129671	ATGAAACAGTACCTGGTGC		59	7129482	7129500	CTCCACAGCAATATCCTCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG34220	FBgn0085249	FBtr0112413	1	1	1	60	2R	5929611	5929629	GTGAGCCTAATGATACGAC		57	5929569	5929588	GTTATAGTGGTGGTTGTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Epac	FBgn0085421	FBtr0112636,FBtr0112635	3	2	2	95	2R	2653106	2653124	AATGGATCCGTTCTTGGAC		59	2652230	2653047	TCGCAGTGGAAGTAATTGG		59	NA	
Drosophila melanogaster	50	CG15909	FBgn0033090	FBtr0086122	1	1	1	73	2R	2570758	2570836	ATGGTATGTCTTCGTGCTC		59	2570872	2570891	AATTAGCTGTGAGTCTTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arr1	FBgn0000120	FBtr0081030	1	1	1	129	2L	18079716	18079967	ACCACACTTATTGCCAGTC		59	18080057	18080078	GCATCAGAATAAATGGTAGCTC		59	NA	
Drosophila melanogaster	50	CG34043	FBgn0054043	FBtr0100098	2	1	1	89	2L	10280114	10280132	GAATACAGAGATTGCGGAC		57	10279677	10280062	AATTCCTCCACTATTTCTGC		57	NA	
Drosophila melanogaster	50	gcm2	FBgn0019809	FBtr0079838,FBtr0079837	1	2	2	82	2L	9611429	9611447	TAGCAAGGTTCTTAAGCGT		58	9611493	9611570	TGCCACAGGCATTATACTG		59	NA	
Drosophila melanogaster	50	CG7144	FBgn0025687	FBtr0079495	2	1	1	112	2L	7793321	7793518	CATTCAGTCGGCTATTATCG		58	7793228	7793246	AACTTCCCTCCATCTTGTG		59	NA	
Drosophila melanogaster	50	CG7211	FBgn0031941	FBtr0079481	2	1	1	60	2L	7747625	7747643	AAAGAAGTCCGGACTTTCC		59	7747667	7747685	GGTGACCAGAACATTTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6630	FBgn0031921	FBtr0079456	2	1	1	122	2L	7482821	7482900	CTTCCTAGCATATCGCCTG		59	7482717	7482736	ATATCCCTGCTTGGTAATGG		59	NA	
Drosophila melanogaster	50	CG4648	FBgn0031225	FBtr0078149	1	1	1	80	2L	147396	147414	ATCCGGTATTTCCACAGAC		59	145896	147352	TCTGTTTCGGTATCCACTG		58	NA	
Drosophila melanogaster	50	mt:tRNA:N	FBgn0013701	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-137	FBgn0082181	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30209	FBgn0050209	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30212	FBgn0050212	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:P:35Bb	FBgn0028911	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snmRNA:430:CR33729	FBgn0053729	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi18S-531	FBgn0083027	FBtr0113559	1	1	1	78	X	657227	657245	AGAGTGAGCTTTATGCGTC		59	657167	657187	CCCAAATAAAGAAGAGTGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pncr004:X	FBgn0047095	FBtr0091949	2	1	1	61	X	19068744	19068763	TTGTTGTTTGATTTCGCGAG		59	19068702	19068722	ACCAACAGTCCATAGATTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40500	FBgn0069968	FBtr0111197,FBtr0111196,FBtr0111198,FBtr0111199	3	4	4	209	X	22282268	22282286	CAGTCTCAGGGACATTCAC		59	22282912	22282931	ATGACACAGATGTGATAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14615	FBgn0031184	FBtr0077369	2	1	1	61	X	21849845	21849863	ATTGTCGCTACTAACTGGC		59	21849802	21849820	AGATCTTTCTGGTACCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sep1	FBgn0011710	FBtr0077198,FBtr0077199	1	2	2	117	X	21230623	21230641	GAGTTCACCCTAATGGTGG		59	21230722	21230806	TTTGTTTCTCTATGGCGTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572	1	5	5	80	X	20644230	20644248	CGCTAATATACAGGGTGGT		58	20643790	20644186	GACGCACTAACCTAAATCG		58	NA	
Drosophila melanogaster	50	Fim	FBgn0024238	FBtr0074443,FBtr0074441,FBtr0074442	1	3	3	87	X	17182017	17182035	AACAACCATCCAGGATTGG		59	17181556	17181966	AATTGCGGTAGGTCTTCTC		59	NA	
Drosophila melanogaster	50	CG10598	FBgn0003057	FBtr0074400	2	1	1	138	X	17120018	17120036	TTAACGAAGGCTACTCTGG		58	17119898	17119916	ATTTACCAGCCCTTGTTCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9699	FBgn0030772	FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369	3	6	7	84	X	16588098	16588116	CATTGAGGCGGTTAAATGC		59	16580759	16580777	AAAGCCTATGTAATCGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074215	1	1	5	101	X	16175214	16175232	ATATTTGTTGAGGAGGCCG		59	16175295	16175480	TACCCTGATCTTAAACTCGAC		58	NA	
Drosophila melanogaster	50	Gbeta13F	FBgn0001105	FBtr0074106	1	1	6	144	X	15754271	15755416	GTTAACACTGCGTAACACAG		59	15755523	15755614	CTCTTGTTAGATGGTGGCT		58	NA	InUTR
Drosophila melanogaster	50	Myb	FBgn0002914	FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169,FBtr0074173	2	5	5	60	X	15749530	15749548	CCGAATACAATGCTCAGTC		58	15749488	15749507	GTTGAGAGCAATGACTTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14414	FBgn0030571	FBtr0073931,FBtr0073930,FBtr0073932	1	3	3	295	X	14475629	14475647	CAATGCGCTACTGAAACTG		59	14475980	14475998	CGCGATCCTTGTTAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32598	FBgn0052598	FBtr0073918	1	1	1	70	X	14210364	14210382	GATTCGCTGAGAAGTTTCG		58	14210312	14210332	AGGTAAATCGACTCCTTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Yippee	FBgn0026749	FBtr0073789,FBtr0100168	3	2	2	60	X	13280865	13280884	AGTCAATTGATCAGTACCCG		59	13280758	13280776	CACGCTTAAACAGATAGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Smr	FBgn0024308	FBtr0073707,FBtr0073706,FBtr0073708	2	3	3	86	X	12604887	12604908	CAATTATCTTGGACAGAAGCTG		59	12604744	12604841	TTGGATTCACTAACATCCGA		58	NA	
Drosophila melanogaster	50	Tango4	FBgn0030365	FBtr0073622	3	1	1	63	X	11916286	11916304	CATAGTCCTCCATCCATCG		58	11916331	11916349	CCACTGCTTGATGTTATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0073589,FBtr0073588	3	2	10	127	X	11856268	11856287	GAAGATCATTGGATTCGGTG		58	11848305	11854113	TTGAGTTCGAATCATCGTG		57	NA	
Drosophila melanogaster	50	PhKgamma	FBgn0011754	FBtr0090001,FBtr0090000	2	2	3	81	X	11592561	11592579	TCTAGTCGTTGATCCTTCG		58	11592624	11594665	ACCCATTAACACCATTTGG		57	NA	
Drosophila melanogaster	50	CG1637	FBgn0030245	FBtr0073406	2	1	3	75	X	10769194	10769282	GGAGAAGTTCAACTTCTCG		57	10769137	10769157	GAAGCTGTAGAACATGTTCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Rph	FBgn0030230	FBtr0071502	1	1	1	134	X	10644296	10644314	CAATGGCAAGATGCTTCTC		59	10644119	10644198	TTGAGTTGGATCTTGACGA		58	NA	
Drosophila melanogaster	50	CG17754	FBgn0030114	FBtr0071314,FBtr0071316,FBtr0071315	1	3	3	215	X	9148059	9148150	ATACCTGGACTCTGATCTG		57	9148329	9148347	GTATGACATTCGGAATCGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG12056	FBgn0030099	FBtr0071305	1	1	1	60	X	9087118	9087137	GATGTGTTAACCCTAAAGCC		58	9087160	9087178	GATAGAAATCCCGCCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bx42	FBgn0004856	FBtr0071350	2	1	1	267	X	8999666	8999684	CCCAGTACATTCGGTACAC		59	8999352	8999435	GGAATGGTGTAACCTTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7766	FBgn0030087	FBtr0114595,FBtr0071351,FBtr0114594	3	3	5	111	X	8994627	8994645	ATGATCGACATCCTCAAGG		58	8992435	8994554	TCTTGTCCTGATCTAGATGGA		59	NA	
Drosophila melanogaster	50	CG4040	FBgn0030076	FBtr0071283	3	1	1	111	X	8946320	8946338	ATGCTGACCTATTTGGAGG		59	8946413	8946492	CACGGGTGATATGAATGTG		58	NA	
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071271,FBtr0071270	3	2	10	102	X	8770413	8770432	GCGTGTAAAGAAGTATGTGG		58	8770084	8770349	TGATCCAGTCATATCATCGG		58	NA	
Drosophila melanogaster	50	Crag	FBgn0025864	FBtr0071219,FBtr0071220	3	2	2	102	X	8488660	8488736	ACGAGGATTACGATGAGTC		58	8488802	8488820	ATAGCCTTGATCATGTGCA		59	NA	
Drosophila melanogaster	50	dec-1	FBgn0000427	FBtr0071147	1	1	3	60	X	7764241	7764259	AGGTAGATGAGATGTTGCG		59	7764015	7764033	TATTGTCTGAAATGCGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	dec-1	FBgn0000427	FBtr0071146,FBtr0071145	1	2	3	106	X	7764290	7764311	CCAGTCAATTCGTATCAAAGTC		59	7764007	7764223	TTCGGGTTTATTGTCCTGG		59	NA	
Drosophila melanogaster	50	CG32736	FBgn0052736	FBtr0071007,FBtr0071008	2	2	2	60	X	6905877	6905895	AAGAACTACGTGGAAGAGC		59	6905918	6905937	CTTAGTTGGTGTTATTCGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4542	FBgn0029906	FBtr0070970	3	1	1	102	X	6716154	6716235	GTGCCAAGAAACAAAGTCC		59	6716300	6716319	ATTAAGATGGCCTTCTCGTG		59	NA	
Drosophila melanogaster	50	pod1	FBgn0029903	FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966	1	5	6	106	X	6701674	6702856	CAATTATTCCACGTTTGGGT		58	6702925	6702943	GATATTCTCGTGGGATCCC		58	NA	
Drosophila melanogaster	50	pod1	FBgn0029903	FBtr0070965,FBtr0070968,FBtr0070967,FBtr0112956,FBtr0070964,FBtr0070966	2	6	6	80	X	6700769	6700787	GTTTGATGTACTCCACAGC		58	6700828	6700925	GCTCATTGTTCGAGAATATCTC		59	NA	
Drosophila melanogaster	50	Marf	FBgn0029870	FBtr0070909,FBtr0070910	3	2	3	125	X	6263369	6263388	CTGGAGTTTAAGTTCAGCTG		58	6263476	6263563	TACGCTGTGTCCAATACTG		59	NA	
Drosophila melanogaster	50	CG15771	FBgn0029801	FBtr0070809,FBtr0070810	3	2	2	148	X	5652315	5652334	AACTTTCTCAATGTCAAGCC		58	5652502	5652520	ACATCCTCTAGCGATTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11473	FBgn0029779	FBtr0070857	2	1	1	73	X	5524057	5524078	CCATTATTGTGGGATTCATCAG		59	5523727	5523745	GATGTCGTTCAGATTGGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6133	FBgn0026079	FBtr0070669	1	1	1	153	X	4005692	4005710	GAAGAAGGAAACCCAGGAG		59	4005499	4005517	GAGAATGTGGATGGTCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12206	FBgn0029662	FBtr0070528,FBtr0070529,FBtr0070527	2	3	3	153	X	3360229	3360310	CGTATAAATCGATTGCCACG		59	3360095	3360113	ACTTCATCGCAATTCATGC		59	NA	
Drosophila melanogaster	50	Vinc	FBgn0004397	FBtr0070420	3	1	1	165	X	2114541	2116266	AACTCACTACAGATCTGGC		58	2112117	2114412	CAGACGAGATACCTGTTGG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Adar	FBgn0026086	FBtr0070299,FBtr0100557,FBtr0070300	1	3	3	60	X	1677570	1677590	CAAAGTAACCACTGACTATGG		58	1677612	1677697	CTTTGCGATCTGATAGTCC		57	NA	DesignRelaxed
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0110927	1	1	5	60	X	938203	938222	AGGAGGAAGATCAAGTTCAG		58	938245	938263	TATATTGTGAGAGTGCCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mod(r)	FBgn0016038	FBtr0089724,FBtr0089723	1	2	4	98	X	516384	516490	ATATCAGGATTGCAGCTTCC		59	516551	516569	ACGTGTTGAGGAAAGTCTG		59	NA	
Drosophila melanogaster	50	CG40748	FBgn0085513	FBtr0113926	1	1	1	60	U	8192488	8192507	CACAGTAACTAAGAAGCGTG		58	8192447	8192468	GCTTTCATTCATTAGCTTCTGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41576	FBgn0085702	FBtr0114151	2	1	1	60	U	6401116	6401136	GTAGTGATTCCATGATAAGCG		58	6401157	6401176	GAAGCAGTTCAAGACAAGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG41529	FBgn0085671	FBtr0114118,FBtr0114119	2	2	2	65	U	3832285	3832303	CAATTGGTTTGACCTGCTC		59	3832331	3832350	AGCTTCTGGTTGAGATTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40629	FBgn0085505	FBtr0113918	3	1	2	168	U	2572813	2572831	AACTACACTTACCGTCTGC		59	2573004	2573022	CATTAAGGCCTTCTGATGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG41310	FBgn0085606	FBtr0114050	1	1	1	60	U	1971709	1971727	GCATTGTCACTCCTAATGG		58	1971748	1971769	CAGCGCAGATATGATTTATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Caps	FBgn0053653	FBtr0091630,FBtr0091632	1	2	3	125	4	1254595	1257735	GAACATTACGGAGAACTGC		58	1257824	1257842	AATGAGTCCAGTACTGTCG		58	NA	
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211	1	4	7	180	4	1080191	1080209	CAACACAACCTCTCAACAG		58	1079962	1080047	TGAGAAGAGTCCATTGCAG		59	NA	
Drosophila melanogaster	50	CaMKI	FBgn0016126	FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065	2	6	7	96	4	467853	470559	TTTGAGAAGGTTCAGTGCA		59	470889	470910	CTCATACGTTTCTAAGAGTTGC		59	NA	
Drosophila melanogaster	50	CG2177	FBgn0039902	FBtr0114519,FBtr0089132,FBtr0089133	1	3	3	78	4	333993	334011	AACTCTTGGATTGGTTGTG		57	333875	333893	AACGTCTTGATGGCTAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156	3	9	10	81	4	103362	106346	TCCTAAGATGGGCTTAACTC		58	106387	106408	CATATCTGAACTTAGCATTGGG		58	NA	
Drosophila melanogaster	50	Hsromega	FBgn0001234	FBtr0084059,FBtr0084057,FBtr0084058	1	3	3	60	3R	17123843	17123862	CTATCATCGAACAAGTTCCG		58	17123885	17123903	GAACGTAATATGCTGCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2053	FBgn0039887	FBtr0085873	1	1	1	60	3R	27864626	27864647	GTCTACTGAAATCAGATCATCC		58	27864668	27864686	GGAATTAATTCAGTGCCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1746	FBgn0039830	FBtr0085773,FBtr0085774,FBtr0085772	3	3	3	209	3R	27043629	27043647	AGTACTTGCGACCATTGAG		59	27042876	27042895	CGAATACTGTTCCGATACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15556	FBgn0039821	FBtr0085737	3	1	1	60	3R	26955067	26955086	CCAACTGAAGAGAAAGGGAG		59	26955026	26955047	GAGTGAATCTCGAGTATAGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15549	FBgn0039810	FBtr0085752	2	1	1	68	3R	26762120	26762139	AATTATCCCTCGGATTTGGG		59	26762071	26762089	GATGTCAGTTCGATCCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sap-r	FBgn0000416	FBtr0085714,FBtr0085713	3	2	2	80	3R	26710365	26710453	ATCTGGATGATCTCGAAGTG		58	26710304	26710322	TGCTAGACAGCTTGTTGTC		59	NA	
Drosophila melanogaster	50	CG15533	FBgn0039768	FBtr0085626	3	1	1	118	3R	26256511	26256607	GAATTGATGAGAAAGTACTGGC		59	26256686	26256704	GAATTGATGGTCACAGCAG		58	NA	
Drosophila melanogaster	50	RpS7	FBgn0039757	FBtr0089423,FBtr0089425,FBtr0089422	1	3	4	69	3R	26032436	26033825	TTGAACACAAAGTCGACAC		58	26032385	26032403	AATTCGAAGGTAACATCGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Ice	FBgn0019972	FBtr0085482	2	1	1	63	3R	25626176	25626194	ACATCTGGAGCTTCTTCAC		59	25626221	25626239	AAGAACAACTTGGGTTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alph	FBgn0086361	FBtr0085446,FBtr0085442,FBtr0085445	3	3	5	167	3R	25422971	25422990	GAGTCTAGCAAGATAACCGA		58	25423191	25423900	CTAATGCGTTGGACTTTCAC		59	NA	
Drosophila melanogaster	50	Ptp99A	FBgn0004369	FBtr0100523,FBtr0085423,FBtr0085422,FBtr0110981	1	4	5	107	3R	25297478	25297496	ATGTGTTCCACATACACGA		58	25297567	25298890	TGTAGGGTCGTAAGTTCTG		58	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	1	8	8	120	3R	24962131	24962214	CCAATGATAAGCCCTACTCC		59	24962294	24962315	CCCATGAACATATAGGTTTCAC		58	NA	
Drosophila melanogaster	50	Gr98b	FBgn0046887	FBtr0085186	2	1	1	138	3R	23369224	23369300	TGCATAAATGCGTACAACTG		59	23369401	23369419	ATGTGAAACGCAACTTCAG		58	NA	
Drosophila melanogaster	50	CG34293	FBgn0085322	FBtr0112489	1	1	1	60	3R	22991070	22991089	GATTCTTTCTGGTGATGCTG		58	22991029	22991050	TAGTTGGGAAGATACATGAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0112834	2	1	12	81	3R	22892915	22893094	TCTAATCACTTACAGTACGAGG		58	22892855	22892873	CAACTCCCTCATCATTGGT		59	NA	
Drosophila melanogaster	50	CG34129	FBgn0083965	FBtr0110870	1	1	1	60	3R	22016589	22016608	CGATAGGGAGAACTATGCTG		59	22016548	22016568	CTGGTAGATAAATTTCTCGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5948	FBgn0039386	FBtr0084939	1	1	1	80	3R	21722408	21722493	CAGTTTCCCAATAACTTTCTCG		59	21722532	21722552	CAGGTAAATGCTCTGAAAGAC		58	NA	
Drosophila melanogaster	50	CG17370	FBgn0039381	FBtr0084909,FBtr0084910,FBtr0084911	3	3	3	90	3R	21711544	21711628	GGAACCAACGGATAAATTCG		59	21711680	21711699	GAAGAACATGATGAGCAGTG		58	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100632,FBtr0100636,FBtr0100637	2	3	17	92	3R	20521093	20521111	GGACATTAAGGACGAGACG		59	20521837	20528849	CGATTGAGTACTAAGTCATCGA		59	NA	
Drosophila melanogaster	50	mld	FBgn0083077	FBtr0111013,FBtr0111012	2	2	2	148	3R	20445690	20445708	ACAAGAAGTGCTACAGCAG		59	20445820	20445903	GCATTTCCACTGTTGATGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG13622	FBgn0039202	FBtr0084680	3	1	1	62	3R	20348697	20348715	GTCAGGGTCAGGTTTACAG		59	20348653	20348671	GTTTGGGATACTGAACTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	jar	FBgn0011225	FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173	1	4	6	85	3R	20079843	20080373	CCCAAACAAATTGATCAGATCC		59	20079779	20079797	ACTTCCACTTGGACAAGTC		59	NA	
Drosophila melanogaster	50	CG5669	FBgn0039169	FBtr0084565	1	1	1	60	3R	20050915	20050933	CCAATCTTCAGGCTTTACC		58	20050873	20050892	TGAATGATTTGCACTTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13606	FBgn0039161	FBtr0084553	2	1	2	143	3R	20006410	20006428	AATGCGAACCTCTTTAAGC		58	20006535	20006553	ACACGACTACATATTGCAC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG18428	FBgn0039149	FBtr0084543	2	1	1	68	3R	19935512	19935530	GAGATTGTGACCAAAGAGC		58	19935562	19935580	GTAGAACTCTCCATCACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33108	FBgn0053108	FBtr0084504	2	1	1	60	3R	19822899	19822918	TTGTAGGTTATCTGGTGGAC		58	19822999	19823017	GATTTACCATGACGAGCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5854	FBgn0039130	FBtr0084495,FBtr0084494	3	2	2	67	3R	19760640	19760754	ATAAGCGCTATTTGATGCC		58	19760784	19760803	CTTCATTGTCTCGTTCAGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31142	FBgn0047114	FBtr0084492	1	1	1	69	3R	19755345	19755363	AGTGCCTTCTATGAAACCA		58	19755396	19755414	CTTCTCGTTCTGCATTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31414	FBgn0051414	FBtr0113405	1	1	1	89	3R	19531434	19531507	CAGGATCATGTCTATAGATCCT		58	19531557	19531575	CATATCAAAGTCGGAACCG		58	NA	
Drosophila melanogaster	50	CG4434	FBgn0039071	FBtr0084382	3	1	1	83	3R	19114374	19114395	TCTACATCCGAGCTTATTATCG		59	19114251	19114333	TATGTTCGGTAGTTGACTATCG		59	NA	
Drosophila melanogaster	50	CG13837	FBgn0039042	FBtr0084345	1	1	1	60	3R	18869925	18869943	TGTTTGGATCGAAAGTTGG		58	18869966	18869985	GGGATTTAGTGGTTATGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13838	FBgn0039041	FBtr0084344	2	1	1	77	3R	18868126	18868144	TTTCGATGACCTCATCGAG		59	18868185	18868203	TTTAGGTCATCCAAGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	loco	FBgn0020278	FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273	1	4	4	85	3R	18446567	18446653	AGCACCAAGATGAACTACTC		59	18446501	18446519	GTCGAAGTTGATTTCGGTG		59	NA	
Drosophila melanogaster	50	CG33107	FBgn0053107	FBtr0084279	1	1	1	107	3R	18410052	18410070	ATGATGACGTACCAAAGGG		59	18409905	18409981	GTAGAACATCTCCTCCGAG		58	NA	
Drosophila melanogaster	50	PyK	FBgn0003178	FBtr0084213,FBtr0084214	1	2	2	191	3R	18197875	18197951	CACTCATCTACAAGGAGCC		59	18198191	18198210	GCAGAATTTATTCGACGGTG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG6455	FBgn0019960	FBtr0084189,FBtr0084188	3	2	2	129	3R	17847610	17847628	CAAGCCTAAGGATAATCCG		57	17847439	17847517	GACATCGTCATTAAAGCCT		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG5849	FBgn0038897	FBtr0084125	1	1	1	80	3R	17568321	17568339	AAGATGTTTCATCACGCCT		59	17568380	17568476	CACGCTATAACGATATTTCTCC		58	NA	
Drosophila melanogaster	50	Rab11	FBgn0015790	FBtr0084010,FBtr0084011	2	2	2	77	3R	16940758	16940776	GTTTCATAGAAACCTCGGC		58	16940817	16940984	TGCGATAGATCTCTGTGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Cortactin	FBgn0025865	FBtr0084039	1	1	1	98	3R	16889218	16889236	CAAATTTGGAGTGCAGTCC		59	16889047	16889158	TTGGAGTAATCCTTCTGAGAC		58	NA	
Drosophila melanogaster	50	Atpalpha	FBgn0002921	FBtr0089510,FBtr0089513,FBtr0089515,FBtr0089514,FBtr0089509,FBtr0089512,FBtr0089516,FBtr0089511	3	8	8	107	3R	16799059	16799235	GTCAAGAATGGACCTACCG		59	16799305	16799324	TCTTGCAGATGATCAGATCG		59	NA	
Drosophila melanogaster	50	CG17838	FBgn0038826	FBtr0083962,FBtr0113256,FBtr0083959,FBtr0083963,FBtr0083958,FBtr0083961	1	6	8	80	3R	16618211	16618229	CACAAATCGTGGTTATGCA		58	16618273	16619451	TCGTGATTATCGAGCTGTC		59	NA	
Drosophila melanogaster	50	CG31199	FBgn0051199	FBtr0083930	1	1	1	60	3R	16568866	16568884	ACGTTTGTAGTAGCTGGTC		59	16568824	16568844	TGTTTACCCAGGTCTTTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4390	FBgn0038771	FBtr0083836,FBtr0083837	3	2	2	60	3R	15882338	15882356	CAATGATCACATCCAGACC		57	15882296	15882314	GTAGAAGTAGCTGTGATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31220	FBgn0051220	FBtr0083782	3	1	1	60	3R	15475843	15475864	ATATACGATGGCTTACTATCCG		59	15475883	15475903	GAATTTCATCAGTGACCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31245	FBgn0051245	FBtr0083773	3	1	1	61	3R	15202703	15202721	GAAACTCGAGACCCAAGTC		59	15202660	15202678	CCATCTAGTAGGTTCCGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3773	FBgn0038692	FBtr0083737	2	1	1	193	3R	15055968	15055986	TTTATGCCATTCCGAACCA		59	15056143	15056217	ATGCGAACCTCCTTTACTC		59	NA	
Drosophila melanogaster	50	CG7670	FBgn0038608	FBtr0083586	2	1	1	84	3R	14191451	14191469	TAATACGCCAAAGCAAACG		59	14191324	14191404	CTTCTCAGTCACATCTGGAG		59	NA	
Drosophila melanogaster	50	CG14322	FBgn0038532	FBtr0083476	2	1	1	128	3R	13494448	13494530	CAATTGGAGTTTGTTTCTGG		57	13494619	13494639	GTTCAGGACGTAAATATAGCC		58	NA	
Drosophila melanogaster	50	CG31190	FBgn0051190	FBtr0089444,FBtr0113397,FBtr0089443	3	3	4	90	3R	13307713	13307894	ATTGTTACCTGGCAGATCC		59	13307641	13307659	TGATGTTCTGCTTCTCCTC		58	NA	
Drosophila melanogaster	50	ss	FBgn0003513	FBtr0083318	2	1	1	193	3R	12216469	12216487	AGCATTCTAAGGCTGTCTG		59	12205504	12209707	AGAAATCCATTTAGGGCCTG		59	NA	
Drosophila melanogaster	50	CG5013	FBgn0038396	FBtr0083223	2	1	1	79	3R	11875934	11875952	TTGATATCGATGTGGTGGG		59	11875995	11876013	AATGATAAGGTCCAGAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083209,FBtr0083210,FBtr0083205,FBtr0083204	1	8	8	80	3R	11780339	11780357	TGGATCCTTCTTGTCATCG		59	11780398	11780482	GAGTCGAGAATGGTATTATCCT		58	NA	
Drosophila melanogaster	50	Rh6	FBgn0019940	FBtr0083146	3	1	1	60	3R	11309218	11309239	TGTGATGTACATCTTTACCTCG		59	11309260	11309278	GACCACAAACATGTTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34316	FBgn0085345	FBtr0112514,FBtr0112515	2	2	2	60	3R	11056768	11056786	GATCCTTGGCCTATATCCT		57	11056810	11056894	TTTGTAATGGAGGTTTCGG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG3563	FBgn0038259	FBtr0082989,FBtr0113234,FBtr0082988	3	3	3	125	3R	10616865	10616883	GTTACAGTAGTGCCTCGAC		59	10616970	10619180	GATAAGTGGCTTGTATCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9611	FBgn0028487	FBtr0112937,FBtr0112938	1	2	5	135	3R	9522484	9522560	CTTTCCGGATAGCTTTCAC		58	9522367	9522385	GCGATCATATTCCTGACAG		57	NA	
Drosophila melanogaster	50	CG18616	FBgn0028495	FBtr0082643	1	1	1	157	3R	8458166	8458184	TCAGCCTAGAGTCTTTGGA		59	8458303	8458388	CATGTGACCTAGCAATTTGTG		59	NA	
Drosophila melanogaster	50	CG5844	FBgn0038049	FBtr0082591	1	1	1	166	3R	8259974	8259992	AAATTTGGAGGTCTGTTGG		57	8260193	8260211	AGCGTGATGTTCTTATCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33098	FBgn0053098	FBtr0082579,FBtr0082578	3	2	3	156	3R	8213833	8213851	CTCGACTATGAAGCCTTCG		59	8214033	8214051	TGTCACCATAGTTGGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17360	FBgn0037949	FBtr0082531	2	1	1	80	3R	7608083	7608163	CAGTAGCTTAATGGGTTCCA		59	7608022	7608040	GTAGGCGTAGAGCTTAACG		59	NA	
Drosophila melanogaster	50	CG6923	FBgn0037944	FBtr0082432,FBtr0082433	3	2	2	109	3R	7571158	7571176	CTACTCACCACTGCATCTG		59	7571003	7571088	GCTCAATAGTTTCCAAAGTAGC		59	NA	
Drosophila melanogaster	50	CG12594	FBgn0037941	FBtr0082429	1	1	1	80	3R	7556032	7556111	CATTAAGGGCTAAGAACGAC		58	7556152	7556172	CCTCCAGATAAAGATTGTGAG		57	NA	
Drosophila melanogaster	50	KP78b	FBgn0026063	FBtr0082408	2	1	1	60	3R	7173530	7173551	GTCTGCTATTGAATACTGTCAC		58	7173491	7173510	GTTCTCTGCCTTTAGATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17184	FBgn0037884	FBtr0082364,FBtr0082363	1	2	2	92	3R	7059704	7059722	TTATTTCGTCGGTGAACAC		58	7059279	7059648	CATCGAATTCGATTCTGGC		59	NA	
Drosophila melanogaster	50	CG14687	FBgn0037835	FBtr0082280	3	1	1	67	3R	6618942	6618961	AGAACAATACGGGAAATCCC		59	6618991	6619009	TTTACCACCATTCTCGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Crc	FBgn0005585	FBtr0082103	1	1	1	106	3R	5456247	5456265	GGATACGTGGATCTACAGC		59	5455891	5456177	AGGTCTGAATGCCTTTGTC		59	NA	
Drosophila melanogaster	50	neur	FBgn0002932	FBtr0082001,FBtr0082002,FBtr0082004,FBtr0082003	2	4	4	222	3R	4847925	4847943	CGATATAAACGGCCAACTC		58	4847659	4847677	ATTCTCGTAGCAGATGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11984	FBgn0037655	FBtr0082008,FBtr0082009,FBtr0082007	3	3	3	165	3R	4837857	4837875	CATTGCGGAACTGTTATCG		59	4837615	4837633	CGATGTTGAGACTATGGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0089782,FBtr0089781,FBtr0114459	1	3	8	81	3R	4660660	4661006	CATATACGGTACCCTACGAC		58	4660598	4660616	TAGATGCTGTACTTGCTGG		59	NA	
Drosophila melanogaster	50	CG8359	FBgn0037634	FBtr0081919	1	1	1	60	3R	4632612	4632633	CAAGAATCGAATATTGAGCCTG		59	4632653	4632672	CCGTATTTATGTTGCTTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8007	FBgn0037600	FBtr0081877	2	1	2	66	3R	4448078	4448096	CAACGGATACGGATCTCAG		59	4448126	4448213	TCCTTTATGCTGGAATCGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31463	FBgn0051463	FBtr0081831	1	1	1	60	3R	4118759	4118777	CTTGGTAATGCGCATTCAG		59	4118801	4118819	GACATTGCGTTTAACCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7891	FBgn0037551	FBtr0081794	3	1	1	80	3R	3954138	3954224	GAACGAATGAATCTATCGAGC		58	3954265	3954284	GTCAATGTTGTCCTTCTCCT		59	NA	
Drosophila melanogaster	50	CG7891	FBgn0037551	FBtr0081794	1	1	1	80	3R	3954137	3954223	CGAACGAATGAATCTATCGAG		58	3954265	3954283	TCAATGTTGTCCTTCTCCT		58	NA	
Drosophila melanogaster	50	CG3014	FBgn0037519	FBtr0081773	1	1	1	78	3R	3626412	3626430	ACCATCTTACGACAGTTGC		59	3625649	3625669	GTTACTCCCTAATGTTTGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1234	FBgn0037489	FBtr0081599	1	1	1	146	3R	3070186	3070260	ATTGGCAAACTTACCTCCC		59	3070058	3070076	CTCCTGTTTGAAGTCCGAG		59	NA	
Drosophila melanogaster	50	Alh	FBgn0037471	FBtr0081613,FBtr0113199,FBtr0081612,FBtr0081614,FBtr0081615	3	5	6	153	3R	2926915	2926936	GAAGATCAGCTATGAGAAACAG		58	2925169	2925187	GACCAAGGGAGATGTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	lab	FBgn0002522	FBtr0081696	1	1	1	71	3R	2488344	2488362	CTTCAATCGCTACTTGACG		58	2488046	2488309	ACCTGCGTTTCATTAAGCT		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG1213	FBgn0037387	FBtr0078643,FBtr0078642,FBtr0078644	1	3	3	64	3R	1671125	1671143	GATGCAGCTCTTCATTGTG		59	1671243	1671261	GGTATGAAACATACGGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	MTA1-like	FBgn0027951	FBtr0078734,FBtr0078733	2	2	2	91	3R	1466845	1466863	GCTCACAATAATTCCCACG		58	1466659	1466793	GAACTATAGTAACTTCAGTGCC		58	NA	
Drosophila melanogaster	50	CG2911	FBgn0037350	FBtr0113194,FBtr0078740	3	2	2	77	3R	1448312	1448330	ACTACAATGTCATCCCGAC		59	1448253	1448271	TTGAAGTCACTGTTCTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34277	FBgn0085306	FBtr0112472	2	1	1	60	3R	1196912	1196930	TATCTAGCTCCAAGCAGTC		58	1196954	1196972	GAGAATATCCGGATGGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	uta	FBgn0037302	FBtr0078825	2	1	2	86	3R	1062622	1062640	GTCTTAGTCAAGGAGTGGG		58	1062348	1062366	CATTACCATGAAACCAGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11739	FBgn0037239	FBtr0078915,FBtr0078913,FBtr0078916,FBtr0078914	2	4	4	80	3R	205702	205720	CAATCAGACATTCAACGCC		59	205764	205845	GAGGTAACTAGTTGCTGCT		58	NA	
Drosophila melanogaster	50	snoRNA:Me18S-A1806	FBgn0086074	FBtr0114350	2	1	1	60	3L	7632831	7632849	AACTTTACTACCCGAACCA		58	7632870	7632891	ATCAGAATTACGTCCCTTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12460	FBgn0040045	FBtr0111161	2	1	1	213	3L	24527969	24527987	TGATCCAGGATTCAGAGGT		59	24528267	24528317	AGATTTCTCACCATTCGCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	Arf79F	FBgn0010348	FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572	1	6	7	81	3L	22862819	22862837	CTTTACAGTGTGGGATGTG		58	22862563	22862777	GATAAGACCTTGTGTATTCTGG		58	NA	
Drosophila melanogaster	50	CG7611	FBgn0037094	FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362	1	8	8	84	3L	21519967	21519985	TAAACAGCATAGCCTTTCG		57	21520031	21520298	CTATCAAAGTTGTACCCTCTG		57	NA	
Drosophila melanogaster	50	Neu2	FBgn0037085	FBtr0078394	2	1	1	60	3L	21482780	21482801	GGCAATGAACCTGATATTAACG		59	21482741	21482759	AGCTAAAGCCTGGTTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10512	FBgn0037057	FBtr0078297,FBtr0078300,FBtr0078298	1	3	4	296	3L	21199477	21199495	GATGCCATTAGGAGGATCC		59	21200564	21200582	TTCTTCTCCTTGTCTCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33056	FBgn0053056	FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311	3	5	5	132	3L	21191820	21191990	GGAACATATGAGGGAGCAC		59	21191706	21191726	AATTATGTCCACGCTATCCTC		59	NA	
Drosophila melanogaster	50	CG33056	FBgn0053056	FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311	1	5	5	111	3L	21192061	21192083	GGATGGTAGACATATCTACAACC		59	21191820	21191990	GTGCTCCCTCATATGTTCC		59	NA	
Drosophila melanogaster	50	CG34000	FBgn0054000	FBtr0100055	3	1	1	60	3L	20981573	20981593	TCCTAATGCACTACACTAACC		59	20981533	20981552	TCGGGAGTCGATAAATTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3947	FBgn0037019	FBtr0078278	1	1	1	60	3L	20770716	20770734	AACAGAGGAAGAATTCGGG		59	20770674	20770692	TGGGACTGCAATAAATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	knrl	FBgn0001323	FBtr0078212	2	1	1	139	3L	20595360	20610496	CCATATGCGATGAATCAGAC		58	20593028	20593046	TTCTTGCAGTCGGATATCG		59	NA	
Drosophila melanogaster	50	fbl	FBgn0011205	FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188	3	4	5	150	3L	20381809	20381827	CAAGCTGGTCTACTTCGAG		59	20381940	20383027	GACATTGTCCATCTGTAGGT		59	NA	
Drosophila melanogaster	50	CG5618	FBgn0036975	FBtr0078179	2	1	2	131	3L	20347970	20347989	AGGTGATCCATTACTCTGTG		58	20348083	20348418	CTTCGTAGGTGTATGTGCT		59	NA	
Drosophila melanogaster	50	rdgC	FBgn0004366	FBtr0074834,FBtr0074832,FBtr0074833,FBtr0074835	1	4	4	80	3L	20256764	20256782	ATGGATGCTTTGTATGCCA		59	20256823	20256905	GGTAATTTCGCCTGAATTATCG		59	NA	
Drosophila melanogaster	50	CG17233	FBgn0036958	FBtr0074852,FBtr0074851,FBtr0074850	3	3	3	66	3L	20228040	20228058	GGAAAGACCTTCTATCGCA		59	20227932	20227953	GGTAGAGTTTCTTAGTTTCGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6981	FBgn0036945	FBtr0074821,FBtr0074820	1	2	2	96	3L	20182279	20182428	AACATAAGGGAGAGCTGTG		58	20182488	20182506	TAACCCTTCCAGTAGTGGA		59	NA	
Drosophila melanogaster	50	obst-J	FBgn0036940	FBtr0074866	1	1	1	60	3L	20123740	20123758	GGCTAATGACAAACTTCCA		57	20123698	20123716	CGAGAACTTATCGTAGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32213	FBgn0052213	FBtr0074931	1	1	1	208	3L	19469226	19469244	TACAATGGAATCGCCTCTG		59	19469416	19469434	ATGAGAAATGGTGCAGGAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10419	FBgn0036850	FBtr0075032	2	1	1	60	3L	19093033	19093054	GATGAGCAAGTTAAATCCTTCC		59	19092994	19093013	ACTCCTTACGAAGAACTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rad9	FBgn0025807	FBtr0075080,FBtr0112917	1	2	2	88	3L	18864945	18865071	TGCCGAATATAATCCGTGG		59	18864875	18864893	TGCCTCCAAAGTAAGTTCC		59	NA	
Drosophila melanogaster	50	CG18811	FBgn0042134	FBtr0075098	3	1	1	176	3L	18664681	18664699	CCAAATACGATGCTGTCCT		59	18664468	18664486	GCACGTTCTGAATGATCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Msi	FBgn0043025	FBtr0075192,FBtr0110847,FBtr0110846	3	3	3	100	3L	17748770	17748791	CTAGGAACTTAAATGACAGTCG		58	17748632	17748652	GGTGTTAAGATCAAATCCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9706	FBgn0036662	FBtr0075326	1	1	2	167	3L	16777687	16777705	AACACATTGTGCAATCTGG		58	16778001	16778019	ATCGAAGGTTATCTCGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4998	FBgn0036612	FBtr0075377	1	1	2	147	3L	16335188	16335206	AATGCTACCACTACTGCTG		59	16336894	16336912	GGTTTCCATAATAGGCACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Eig71Ef	FBgn0004593	FBtr0075584	2	1	1	63	3L	15650361	15650379	AAGTTAAGGGACACTTGCA		59	15650316	15650335	ACTCCACATTATTGATGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7945	FBgn0036505	FBtr0075600	3	1	3	128	3L	15516169	15516187	TCATTTGCAAGACCTGAGG		59	15515672	15516078	TTAAATGGTCTGTCCAGAGC		59	NA	
Drosophila melanogaster	50	Tollo	FBgn0029114	FBtr0075607	1	1	1	60	3L	15230429	15230449	GAAGAATCTACTTGTGCTCTC		58	15230471	15230489	GGATCTCTGATCCATTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17364	FBgn0036391	FBtr0075789,FBtr0075788	1	2	2	91	3L	13976266	13976284	TCAGCAAGACGAAGTATCC		59	13975942	13976211	AAGCGGTATTCCTGTATCG		59	NA	
Drosophila melanogaster	50	CG32135	FBgn0052135	FBtr0075760	2	1	1	60	3L	13961104	13961125	GAGATATCATCGGATACTCTGG		59	13961145	13961164	AAGTCTGCAATACGAATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9028	FBgn0036389	FBtr0075759	2	1	1	182	3L	13961789	13961865	GGAATCTGGATTTCAGCCA		59	13962011	13962029	GTTCAGTGTTCATGGAGGA		59	NA	
Drosophila melanogaster	50	CG14131	FBgn0036205	FBtr0076028	2	1	1	96	3L	11771330	11771348	GATACTGCTGTCCATGGAG		59	11771407	11771539	TGATGAAGTTGTTCCCTGTC		59	NA	
Drosophila melanogaster	50	CG33270	FBgn0053270	FBtr0076149	1	1	1	79	3L	11571587	11571605	GCTTCATCTGCTAGTACCA		58	11571526	11571544	GTTGTTGTCGTTGATGCTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33267	FBgn0053267	FBtr0089845	3	1	1	156	3L	11557914	11557932	ACCACAACCACAACTACAG		59	11565621	11565639	TGCGCTTATAGTGGATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12289	FBgn0036160	FBtr0076178,FBtr0076179	3	2	2	60	3L	11450911	11450929	TGATACGCCTAATCCTCGA		59	11450869	11450887	GATACCACTATCCGATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6175	FBgn0036152	FBtr0076183	1	1	1	137	3L	11284161	11284179	AATTACTGCAACATCAGCG		58	11282659	11282677	GTGGTTGTACGTTAGGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6327	FBgn0036115	FBtr0076244,FBtr0076243,FBtr0076246	3	3	4	175	3L	11032852	11033105	CAATCCAAGTTCATACGTTCG		59	11031514	11031534	TGTACAAATGTCTCGAGATCC		59	NA	
Drosophila melanogaster	50	CG12362	FBgn0036082	FBtr0076282,FBtr0076281	1	2	2	60	3L	10407208	10407227	AAATATCGCTCTTCAATGGC		58	10407250	10407268	GCATGTGGTTGCTATAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gap1	FBgn0004390	FBtr0076368,FBtr0076367	2	2	2	89	3L	9835629	9835647	TCTGTGATATACCGCTCCA		59	9834654	9835577	TGTGCACAATCTTAAAGCAG		59	NA	
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323	2	4	11	114	3L	9774994	9775718	CTACCTGGGTAATTTGTCTG		57	9775795	9775813	CATATCGTCCTTCATGTCG		57	NA	
Drosophila melanogaster	50	CG5194	FBgn0035955	FBtr0076548	1	1	1	115	3L	9002144	9002162	TTCTGACAAGAAGGATCCG		58	9001997	9002015	ATGGTGGTATGGGAATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cp16	FBgn0000356	FBtr0076574	2	1	1	183	3L	8725292	8725310	GACTGGAATTCCCTCAACC		59	8725591	8725609	TCTTCAGGTACGCATTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7112	FBgn0035879	FBtr0113153,FBtr0076605	3	2	2	81	3L	8343179	8343256	GCTCCTTCATATGCCTGAG		59	8343301	8343319	TTTGTAGAGATCACGGAGC		59	NA	
Drosophila melanogaster	50	CG33275	FBgn0035802	FBtr0089849,FBtr0089850	1	2	3	91	3L	7612960	7613371	TCTATTTACCAGGCACACG		59	7613426	7613444	TTCATAGCAATTGATGCCG		58	NA	
Drosophila melanogaster	50	CG7526	FBgn0035798	FBtr0076799,FBtr0076800	3	2	2	98	3L	7562064	7562181	ATATACGTCAGATCTGCCA		57	7562242	7562261	ATAGGTTTGTGAAACATCGG		58	NA	
Drosophila melanogaster	50	lqf	FBgn0028582	FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794	3	6	6	87	3L	7527257	7527345	GGATTTCAAGGATCCAAACG		59	7527392	7527413	AGAAATATCCAGCAGATCTAGC		59	NA	
Drosophila melanogaster	50	lqf	FBgn0028582	FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794	2	6	6	86	3L	7527258	7527346	GATTTCAAGGATCCAAACGG		59	7527392	7527413	AGAAATATCCAGCAGATCTAGC		59	NA	
Drosophila melanogaster	50	CG8641	FBgn0035733	FBtr0076931	2	1	1	120	3L	7053961	7053981	CGGGAAATAAATGTGATCGAG		59	7053748	7053766	ATGCGGTAATTCTGACGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13298	FBgn0035692	FBtr0077015	2	1	1	93	3L	6185897	6185916	GACATATTCGGCAAATTTGG		57	6185757	6185775	AAATGTCCTCGTAGACGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	D19B	FBgn0022699	FBtr0077017	2	1	1	89	3L	6177480	6177498	TCTTCAAGATGCTCGAGTC		59	6177409	6177427	AGTCATCCTGAGATACTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jon65Aiii	FBgn0035665	FBtr0077041	1	1	1	60	3L	6044471	6044489	CTAACACTCTGCAGTACGA		58	6044513	6044531	TAAGTGTTCTGGCATTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5537	FBgn0035639	FBtr0077112	1	1	1	197	3L	5804898	5804916	TCCAATCTCTTCTGCACAC		59	5805074	5805180	GTGTCTCAAATGCAATCTATCC		59	NA	InUTR
Drosophila melanogaster	50	Sucb	FBgn0029118	FBtr0077135	1	1	2	175	3L	5556421	5556439	GTATGGAGTGGCCATACAG		59	5556183	5556201	ACTTGGTGGTGATATGGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10673	FBgn0035590	FBtr0077180	3	1	1	63	3L	5132213	5132231	CCCACAAGCTGTATATGGA		58	5132168	5132186	GTTTCCTGGATGAACTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acp63F	FBgn0015585	FBtr0073182	3	1	1	93	3L	3816160	3816179	CCCGATTGTAACTTAGATGG		57	3816032	3816105	TTAGTTCGATGAATCCTGGT		58	NA	
Drosophila melanogaster	50	kst	FBgn0004167	FBtr0112840	1	1	4	127	3L	3358074	3358092	AGATAATGCAGACAAGCTG		57	3358240	3358276	GGAAATCCTTTGAAGGCTC		58	NA	
Drosophila melanogaster	50	dro3	FBgn0052283	FBtr0073060	2	1	1	64	3L	3315067	3315085	GCTGTAATGACCATTGTCC		58	3315113	3315131	GTTCCAGATAGGCAATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32280	FBgn0052280	FBtr0073030,FBtr0073031,FBtr0073032	3	3	3	168	3L	3168252	3168339	ATTGCCCTATTTGGTTGCT		59	3168469	3168489	GTAATCAATCTACACCACGGA		59	NA	InUTR
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	2	9	15	80	3L	3083796	3084813	TCGCCACTTATATGAATCGA		58	3084853	3084874	CCAAATTAAGTAGTGAGAACCC		58	NA	
Drosophila melanogaster	50	Shab	FBgn0003383	FBtr0072975,FBtr0112829	2	2	4	85	3L	2941551	2941572	CTCCTTCCATCATATCAATCTG		58	2941618	2942577	TTGTTTGCTTTCCTGTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1143	FBgn0035359	FBtr0072937	2	1	1	94	3L	2646176	2646194	ACCAAGATTAGCATCACCA		58	2646252	2646270	GTGTTTGTCACAGATCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13802	FBgn0035330	FBtr0113127,FBtr0072886	2	2	2	60	3L	2299266	2299774	AAAGCTGAGTGACCTTATGG		59	2299797	2299815	CAGGATGAAGTTGATGCTC		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	R	FBgn0004636	FBtr0072867	1	1	1	106	3L	1861082	1861100	GACAGTTACAGGAAGCAGG		59	1860994	1861012	TTCATGTACAAATCCCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	n-syb	FBgn0013342	FBtr0072815,FBtr0072817,FBtr0072816,FBtr0072819	2	4	5	299	3L	1635310	1635328	GAGGAAATTCTGGCTTCAG		58	1632235	1632253	TCGAGAAACTTTCGTCCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12030	FBgn0035147	FBtr0072556	3	1	1	137	3L	649359	649380	GGTCAACTTCTATAGAGTGGAC		59	650290	650309	TAGTACTGCAAAGGTATGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	MED14	FBgn0035145	FBtr0072554	2	1	2	158	3L	593651	593734	TGGCTGAACTATTACCACG		59	593856	593874	GGAAGCTCATTATCTGCGA		59	NA	
Drosophila melanogaster	50	CG17181	FBgn0035144	FBtr0072563	1	1	1	243	3L	585229	585247	AATCTCCGACTCGAATTCC		59	584944	585022	ATCCATGATTGATCTGTGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	p130CAS	FBgn0035101	FBtr0113120,FBtr0072474	2	2	3	102	3L	168759	168777	CAAACTCAAATTCGGGAGG		58	168843	172071	GGTGTGATTACCTTTGTCG		58	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-3316c	FBgn0082970	FBtr0113519	2	1	1	66	2R	17217698	17217719	GCAATATCTACAATAGCTTGGG		58	17217744	17217764	GGATGTTTACAATCTGAACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tkr	FBgn0003715	FBtr0072458,FBtr0100126,FBtr0072457,FBtr0072456	1	4	4	178	2R	20981953	20981972	GTAAGGAGTTTGGAAAGGAG		57	20979236	20981812	GAGACCAAACATATGTGGC		58	NA	
Drosophila melanogaster	50	CG4065	FBgn0034982	FBtr0100398,FBtr0072280	2	2	2	98	2R	20024114	20024135	TCCAGTTATCAGTTTCTAGAGG		58	20023979	20024055	GATAAAGAAGTTCAGCGCC		58	NA	
Drosophila melanogaster	50	CG4049	FBgn0034976	FBtr0072285	2	1	1	104	2R	19997350	19997434	GGATTTATAGATACGGTCAGAC		57	19997267	19997286	TTCCTTGTTTCTTGATCTGC		58	NA	
Drosophila melanogaster	50	enok	FBgn0034975	FBtr0072250	3	1	1	67	2R	19993167	19993186	TAAGTAATCCACAGCACCAG		59	19993280	19993298	TGAGCTAACTGCAATGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30178	FBgn0050178	FBtr0072159	2	1	1	79	2R	19874559	19874577	TCAACGGATACCTGTTCTG		58	19874620	19874638	ATCGATTGGCTTCTCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3825	FBgn0034948	FBtr0072204	3	1	1	61	2R	19864357	19864375	CCCTTCCTCTTTGTTCTCC		59	19864314	19864334	CGATATTGCTCGTAGATAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5339	FBgn0034925	FBtr0072220	1	1	1	232	2R	19785292	19785310	CATACTGTCCGAGGAACAG		59	19785021	19785040	TGATTACGTTGAAGTTCAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	TBPH	FBgn0025790	FBtr0089627,FBtr0089626,FBtr0089625,FBtr0089624	3	4	4	95	2R	19748031	19748104	CATTATCAAGGGCGTTTCG		59	19747954	19747972	GCAGAGTTGTAGTTGTAGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	TBPH	FBgn0025790	FBtr0089627,FBtr0089626,FBtr0089625,FBtr0089624	1	4	4	143	2R	19748031	19748104	CATTATCAAGGGCGTTTCG		59	19747906	19747924	TTCATGTGGTTACCCTGTG		59	NA	
Drosophila melanogaster	50	CG11299	FBgn0034897	FBtr0113114,FBtr0113113,FBtr0072087	1	3	3	110	2R	19619397	19619415	ATTTACCAGGACTTTGCCC		59	19619489	19619572	ATCGTTGTACAATCCGTCC		59	NA	
Drosophila melanogaster	50	Pde8	FBgn0034886	FBtr0072074,FBtr0072077,FBtr0072075,FBtr0072076	3	4	5	103	2R	19562499	19562638	CGTTAATAGATGCGTAGCG		58	19562705	19562723	GAGTGGACATGACATTGTG		58	NA	
Drosophila melanogaster	50	yip3	FBgn0040063	FBtr0072050,FBtr0072051	1	2	2	116	2R	19132234	19132252	TCTTAAGAGTACCAACGCC		59	19132086	19132104	ACTATGTTCCGATCGATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30270	FBgn0061435	FBtr0089763,FBtr0089762	2	2	2	60	2R	18672277	18672295	TCTTTGGCCAGTATTACGA		58	18672318	18672337	TAATCGTAGGAATGTGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30268	FBgn0050268	FBtr0071877	3	1	1	80	2R	18601081	18601154	ATAATTGCTGAGTTCGAGGAG		59	18601193	18601214	AATATCAAGGGACTGAGATAGC		59	NA	
Drosophila melanogaster	50	RpS24	FBgn0034751	FBtr0071935	3	1	1	66	2R	18528246	18528264	AACAGGATGAAGAAGGTGC		59	18528198	18528216	ATCAGGCTTACTTCTTGCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG30288	FBgn0050288	FBtr0113367	2	1	1	108	2R	17407685	17407705	TGGTCAGAGTAATGATTTCGG		59	17407478	17407555	CGCACATTCATATACATTGGG		59	NA	
Drosophila melanogaster	50	CG10069	FBgn0034611	FBtr0071590,FBtr0071589,FBtr0071591	3	3	3	80	2R	17172235	17172255	TATCTATCAGATGTGAGCGGA		59	17172297	17172371	ATACATCAGCAGAATGGGC		59	NA	
Drosophila melanogaster	50	CG18375	FBgn0034606	FBtr0071622,FBtr0071623	2	2	2	106	2R	17109400	17109418	GAATATCCTGACAGCAGCT		59	17109240	17109330	ACTGATTGCGGTACATCAG		59	NA	
Drosophila melanogaster	50	CG15658	FBgn0034602	FBtr0071583	1	1	1	90	2R	17085588	17085609	GGACATTAAGTTTCTGATGCTC		59	17085660	17085743	ATCAATTTCCTGGAGCGAG		59	NA	
Drosophila melanogaster	50	CG34201	FBgn0085230	FBtr0112394	1	1	1	60	2R	16638683	16638701	TGTCATATCAGAAGGTCGG		58	16638724	16638743	ACTCAAGGTATCACTTACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13430	FBgn0034518	FBtr0100495	1	1	2	84	2R	16439217	16439294	GCAATGAGATTATGCACCA		58	16439151	16439169	ATCTTCTGCAGATTCTGGT		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	mei-W68	FBgn0002716	FBtr0086461	1	1	1	144	2R	15345800	15345818	GACAATCCTCTGCTAGTCC		59	15345984	15346002	TCATCAGCAGCCTTAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fak56D	FBgn0020440	FBtr0086542,FBtr0086543,FBtr0114605,FBtr0086544	2	4	5	83	2R	15322745	15322827	GGTATTAATACCGCTGAGAG		57	15322681	15322699	CCAAATCGTGAACTCTAGG		57	NA	
Drosophila melanogaster	50	Dpt	FBgn0004240	FBtr0086620	2	1	1	61	2R	14753561	14753579	GAGGACCATATGGCAACTC		59	14753603	14753622	AAATCTGTAGGTGTAGGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)03709	FBgn0010551	FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616	2	6	6	192	2R	14707870	14707888	GATGATCAACATCTCGCTG		58	14708044	14708124	GATGAGTAGGGATACCTGC		58	NA	
Drosophila melanogaster	50	Cyp12b2	FBgn0034387	FBtr0086609	3	1	1	86	2R	14643155	14643175	GGAGAGCTTGAACTACTATCG		59	14643223	14643299	CATTCCTGACCCTGATCAG		59	NA	
Drosophila melanogaster	50	CG5098	FBgn0034300	FBtr0113092,FBtr0086732	1	2	2	196	2R	13986927	13986945	GTACCTAGTGACTAGCGAC		58	13987105	13987192	GCTTACGTTTATGCATGCT		58	NA	
Drosophila melanogaster	50	Mapmodulin	FBgn0034282	FBtr0086822,FBtr0086823	1	2	3	133	2R	13755953	13755971	TTCAAGATGTTGCCATCGT		59	13755049	13755794	TCATCTTCGTCGGAAACTC		59	NA	
Drosophila melanogaster	50	CG8950	FBgn0034186	FBtr0087013	2	1	1	60	2R	12949610	12949628	ATCATCCGACAGAATCCAC		59	12949568	12949586	TCTCATAAATCTCGGCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30100	FBgn0050100	FBtr0087140	3	1	1	71	2R	12179409	12179427	TCAGGAGTCGGATATCGAG		59	12179462	12179480	GATGTCTTGTTGACAGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mrj	FBgn0034091	FBtr0087193,FBtr0087196,FBtr0087194,FBtr0087195	3	4	5	150	2R	12093318	12093419	GAAGTGAAGAAGGCATATCGA		59	12092510	12092528	ACTCATCGTATATGCGACG		59	NA	
Drosophila melanogaster	50	Rho1	FBgn0014020	FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216	3	7	7	83	2R	11993292	11993372	ACACAATTCGGGATCTAGC		59	11993419	11993437	AGGCATTAATCTTCTCGGC		59	NA	
Drosophila melanogaster	50	Mlf	FBgn0034051	FBtr0087294,FBtr0087295	3	2	4	95	2R	11826017	11826036	ATGACTGTGTAATCCAGGAG		58	11825374	11825959	CAATGTTGCCACTGTTCTG		59	NA	
Drosophila melanogaster	50	CG8291	FBgn0034049	FBtr0087298,FBtr0087299,FBtr0087300	1	3	3	80	2R	11812361	11812437	AGGATCGTTTGAGAATCCC		59	11812299	11812319	GGATAGGAAAGCAGATAAGGA		58	NA	
Drosophila melanogaster	50	CG33464	FBgn0053464	FBtr0087305	1	1	1	65	2R	11759748	11759766	AAACCGAAGATTCCTCCTC		58	11759701	11759719	TACTGTCCTCGGTATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k05713	FBgn0022160	FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309	2	4	4	84	2R	11747749	11747767	GAACTTCCTCGAGATCCAC		59	11747608	11747702	TACTGCTCTAGATCTAGGCC		59	NA	
Drosophila melanogaster	50	fus	FBgn0023441	FBtr0087347,FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087348,FBtr0087343	1	6	6	60	2R	11550739	11550760	GTCCATATGGTTATCAATGCAC		59	11550639	11550657	AGTCCATCTGGATAAAGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34365	FBgn0085394	FBtr0112590	2	1	4	155	2R	11304328	11306865	CTTCCAAAGGTTCTTCGGT		59	11306983	11307002	AACTGCTGTGACTGTAATCC		59	NA	
Drosophila melanogaster	50	Cyp6a22	FBgn0013773	FBtr0087450	1	1	1	60	2R	10759325	10759343	TCTACTGCTTATTGCCCTG		59	10759366	10759385	CCAGTAGCTATATCTCGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34379	FBgn0085408	FBtr0112616,FBtr0112614,FBtr0112615	1	3	3	140	2R	10238326	10238345	CCGACGAATTTAATCAAGCA		58	10238511	10238529	CTTGGCGAATAGATCCTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930	2	5	6	106	2R	8335509	8335527	ATCATAACCTCAACAAGCG		57	8335596	8335677	CGAGTTATCACTTGTGTACG		58	NA	
Drosophila melanogaster	50	Buffy	FBgn0040491	FBtr0088077	2	1	1	65	2R	7575229	7575323	TATCATTTCTCAGGGTCGT		57	7575352	7575370	AAACCAGATCTTCTGAGGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	nompA	FBgn0016047	FBtr0089382,FBtr0089381,FBtr0089379,FBtr0089380	3	4	4	81	2R	7202468	7202541	GGGCAATGAATATGATCGT		57	7202405	7202423	ATATCGGGATCCATAACGA		57	NA	
Drosophila melanogaster	50	Cpr47Ec	FBgn0033600	FBtr0088189	3	1	1	66	2R	7146941	7146959	GTGGAGGTGTTCTATACGG		59	7146893	7146912	TTTCCGGATTGATAATGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089356	3	1	26	164	2R	6419738	6419756	GGAGGACATGACAATGGAG		59	6414712	6419549	ACAACCATTGAGTCTTGGG		59	NA	
Drosophila melanogaster	50	CG12901	FBgn0033513	FBtr0088354,FBtr0088353,FBtr0088355	2	3	3	126	2R	6244081	6244099	CAAAGATAAGGCCAAGGAC		58	6243973	6243993	TTCTTATCCCTATTCCTTGCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12209	FBgn0033498	FBtr0088364	2	1	1	80	2R	6134641	6134660	CACGGTGTTCATATTCTTCG		59	6134524	6134601	ATAAACTCCACTATAAGCACGG		59	NA	
Drosophila melanogaster	50	Pka-R2	FBgn0022382	FBtr0088438,FBtr0088437,FBtr0088439	3	3	5	219	2R	5885777	5885795	CGAACGCATCATCAAACAG		59	5884113	5885213	CTTGACATCGAGGAATGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	3	9	9	68	2R	5738998	5739016	CTTTGAGTTGAATGGCCAG		59	5738880	5738966	ACATGGATCTCCTTAACGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	trpl	FBgn0005614	FBtr0088471,FBtr0088472,FBtr0088473	1	3	3	81	2R	5649774	5650241	CTTCCTGTTCATCTTGATTCTG		59	5650283	5650301	CTTCTTCATCCTGGTCGTC		59	NA	
Drosophila melanogaster	50	CG30339	FBgn0050339	FBtr0088534	2	1	1	61	2R	5489660	5489679	TTACTGAATTTGGCCAAGAG		58	5489232	5489636	TTATACACGTGAAACCGCT		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Su(var)2-10	FBgn0003612	FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578	2	9	9	80	2R	5005652	5005727	GCGAGGCTTAATCAAAGAG		58	5005770	5005789	CAGTTAAGGGAAACCTTCAG		58	NA	
Drosophila melanogaster	50	Ggamma1	FBgn0004921	FBtr0088645,FBtr0088647,FBtr0088648,FBtr0088649,FBtr0088646	2	5	5	101	2R	4789860	4789878	TAATGTCATCATCCCTGCA		58	4789943	4789961	TCATCTTAGCGCATGACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6a14	FBgn0033302	FBtr0088734	2	1	2	81	2R	4453354	4453374	CTCATATTGGAAGAGGAAAGG		57	4453293	4453311	GTACTTCTTCACGATTCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30365	FBgn0050365	FBtr0088773	3	1	1	60	2R	4247332	4247350	ACCAATGAGAATACTCCCA		57	4247290	4247308	GTATGGTTTCCTTAGGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kermit	FBgn0010504	FBtr0088813,FBtr0088814,FBtr0088812,FBtr0088811	1	4	4	60	2R	4035544	4035562	AGCTGTACCAGAAGATTGC		59	4035502	4035520	GTGCAGAAGAGAATGTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18853	FBgn0042173	FBtr0089426	1	1	1	298	2R	3717029	3717108	CAAGGTCAGAGCAATTATACC		58	3717368	3717386	TAGTGCTCGTTGTAGAAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	cn	FBgn0000337	FBtr0088931	1	1	1	99	2R	3670887	3670973	TTATGTGGAGATGCGAGAC		59	3670806	3670824	ATGTCTTTCTACCTTCGGC		59	NA	
Drosophila melanogaster	50	CG30497	FBgn0050497	FBtr0088933,FBtr0088934,FBtr0088932	2	3	3	60	2R	3628353	3628371	ACTTGCGTAACCATTTCTG		58	3628311	3628330	TGCATCAGGTACTGATACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL52	FBgn0033208	FBtr0088942	1	1	1	66	2R	3561560	3561578	TACTTAGATGGTAGGCCCA		58	3561452	3561470	TCTCCTGCTGCTTAATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30494	FBgn0027604	FBtr0088918	3	1	1	60	2R	3529409	3529428	TGATGCCCTAACTCAATCTG		59	3529448	3529469	AATCTCTACATTATCCAGCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11127	FBgn0033178	FBtr0088975	3	1	1	61	2R	3351150	3351168	TCCTGCTGATGTACAAGAC		58	3351193	3351211	GAAGTTGACGTACTTGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111102,FBtr0111095	2	2	60	97	2R	3236477	3243205	CGTGCCCTTCTATAGATGG		59	3236398	3236416	TGAGAGTACCAGAGACCTG		59	NA	
Drosophila melanogaster	50	CG3287	FBgn0028954	FBtr0086157,FBtr0086158	2	2	2	60	2R	2701211	2701229	GCTTCCTCATATTTCTGCT		57	2701252	2701554	TAATAGAACAGACCCGACAG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	jing	FBgn0086655	FBtr0114364,FBtr0114363,FBtr0086104,FBtr0114365	2	4	5	186	2R	2506074	2506093	ATGTTTGACTTCTTCGACAC		58	2506242	2506321	ACTCGTCGGAAATGATCTC		59	NA	
Drosophila melanogaster	50	CG34212	FBgn0085241	FBtr0112405	1	1	1	67	2R	1937588	1937606	TTCTACTTGGTGGTCTTGG		58	1937539	1937557	AGGATGAAGCAACCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12547	FBgn0040521	FBtr0111273	3	1	1	76	2R	674665	674683	GAAAGGTTATGCCTGTCGT		59	674545	674563	TAGTCTACCGTCAATGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CR15280	FBgn0028867	FBtr0100604	2	1	1	188	2L	14782721	14782792	CAGACATTATTTGCTCGTCTG		59	14782477	14782571	TTCTCTGTAAACCACTGGC		59	NA	
Drosophila melanogaster	50	snRNA:U2:34ABb	FBgn0004192	FBtr0080443	1	1	1	61	2L	13215851	13215872	CCTTATGGCTAAGATCAAAGTG		58	13215891	13215912	GAGGAACTATCAGATGTTAAGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	nompB	FBgn0016919	FBtr0085924,FBtr0085925	2	2	2	83	2L	21578668	21578757	CGGCAAAGTTTACTATCAGAC		59	21578605	21578623	TCTGAGTATGGACTACGCT		59	NA	
Drosophila melanogaster	50	His1:CG33825	FBgn0053825	FBtr0091829	1	1	1	60	2L	21471711	21471730	GGTCAATGGAAAGCTTATCC		58	21471753	21471771	CGACAGTTTGAAAGATCCA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	nrv3	FBgn0032946	FBtr0081520,FBtr0081518,FBtr0081521,FBtr0081519	2	4	4	90	2L	21385320	21385338	GCACATTAGTTTGGTACGA		57	21385391	21388515	AGATCTTGGTACGATTTCAG		57	NA	
Drosophila melanogaster	50	CG31673	FBgn0051673	FBtr0081422	3	1	1	187	2L	20830560	20830581	GGCATTTAATCTGATGAAGAGG		59	20830786	20830869	GAAGGATAACACAATTGGGC		59	NA	
Drosophila melanogaster	50	Fs(2)Ket	FBgn0000986	FBtr0081392	2	1	1	80	2L	20737379	20737397	GACTGATGTACGACTCCAG		59	20737441	20737527	CCTCGGGAATTATATCGCA		58	NA	
Drosophila melanogaster	50	rtGEF	FBgn0015803	FBtr0081357,FBtr0112885,FBtr0081356,FBtr0112884	2	4	4	80	2L	20355989	20356088	CATACTGGATAAGTACAAGGAC		57	20356129	20356147	GTGAGCACAAGTAATCCAG		58	NA	
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0081213,FBtr0081212,FBtr0081210	1	3	6	177	2L	19410626	19416414	GATGCTCTATTAGCCGACC		59	19410401	19410485	AGTGCTCTTGATACACCTG		58	NA	
Drosophila melanogaster	50	MESR3	FBgn0032694	FBtr0081073	2	1	1	114	2L	18617654	18617672	TTTCTCATTAAACCGACGC		58	18631768	18649609	TTTCGGGTTTAAGTTTCCG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	RpS26	FBgn0004413	FBtr0081091	2	1	3	179	2L	18443101	18443119	GTGCTAAATGCTAATGGCC		59	18442940	18442960	GATGACGAACTTCTTGATTGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	qua	FBgn0003187	FBtr0080997,FBtr0080996	3	2	2	100	2L	17487330	17487412	ATTACGGCAAGAACTTCCA		59	17487248	17487266	GATTAGAGCCGATCCTTCG		59	NA	
Drosophila melanogaster	50	beat-IIIa	FBgn0032627	FBtr0080961	2	1	1	190	2L	17170065	17170143	ATGAAGTTAAAGTGCGTGG		58	17170297	17170315	ATATTAGCTAGGCGTTCCT		57	NA	
Drosophila melanogaster	50	CG6012	FBgn0032615	FBtr0080923	2	1	1	215	2L	16861180	16861198	CAATGTGGTCCTAATCGCT		59	16860563	16860582	TATTTCAGCAAGGATTTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080903,FBtr0080902,FBtr0080899	3	3	13	99	2L	16774774	16774792	AAGTGTAACGAGACTCTGG		58	16774855	16776278	GTTCGAAACCGTTGTACTC		58	NA	
Drosophila melanogaster	50	trpgamma	FBgn0032593	FBtr0080946,FBtr0080945,FBtr0114470	3	3	3	81	2L	16665214	16665233	TCGAGCAAGAATATTTGTCC		57	16665101	16665173	GCTTAAGGGTCTTATCATTCAG		58	NA	
Drosophila melanogaster	50	CG12448	FBgn0028857	FBtr0080796,FBtr0080795	1	2	2	60	2L	15942351	15942372	ACGATTCTGGTATATGACAAGG		59	15942392	15942411	AGTTCATGTACACCTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32971	FBgn0052971	FBtr0114463	3	1	3	134	2L	14277356	14277374	AATTCAAAGGAGTCGAGGA		58	14277533	14277551	CATGCTTAGGACGTTATCC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG32971	FBgn0052971	FBtr0080621,FBtr0114463,FBtr0114462	3	3	3	68	2L	14277702	14277722	CATGATGTCAAGGAGTATCAG		57	14277751	14277770	CGATTGTCTATCCATTTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acyp	FBgn0025115	FBtr0080555	2	1	1	81	2L	13912480	13912499	TTTCATATCAAGCCCGATCC		59	13912543	13912561	AATTGCTATCATGGTGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9254	FBgn0028513	FBtr0080512	1	1	1	60	2L	13596673	13596691	GTAACTCATTTGCCTGGTG		58	13596631	13596649	GACTCAGTGTCCACTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5945	FBgn0032494	FBtr0080450	3	1	1	64	2L	13240890	13240908	ATTTGCAGATCCTGAACTG		57	13241530	13241548	AAATATCGCGCCAATACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Vha68-1	FBgn0020368	FBtr0080429	3	1	1	107	2L	13001499	13001572	AATGAAGTTCAAGGACCCG		59	13001410	13001430	GCTTAGTCCTCTAGATTTCGG		59	NA	InUTR
Drosophila melanogaster	50	CG5075	FBgn0032464	FBtr0080421	2	1	1	60	2L	12981131	12981150	CAAGCTGCATGACAATATCC		59	12981171	12981191	ATAGTCCTCGACATTATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090023,FBtr0090026,FBtr0090022,FBtr0090029,FBtr0090025,FBtr0090014,FBtr0090024	1	8	17	120	2L	12724232	12724250	GAGTTTCGAGAAGCAAGTG		58	12724334	12724773	TAATGAAACCAGGAACGGT		58	NA	
Drosophila melanogaster	50	aret	FBgn0000114	FBtr0080345,FBtr0080344,FBtr0080346	2	3	4	122	2L	12278912	12282525	TAAATGGGATGTACCATCCC		58	12298615	12298633	CAAATAGCTTGCGAACGTC		59	NA	
Drosophila melanogaster	50	rho-6	FBgn0032415	FBtr0080359,FBtr0080360	2	2	2	232	2L	12131043	12131062	TTTATAGGTATCTGCCTGGA		57	12130762	12130780	AACAATATCAGCAGGGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6750	FBgn0032292	FBtr0080122	2	1	1	72	2L	10732190	10732208	GAGATCACCCAAATCCAGG		59	10732076	10732094	TGAGATACTTGCCGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sps2	FBgn0032224	FBtr0079998,FBtr0079997	3	2	2	140	2L	10343347	10343422	ATAATACTACCGTCAAACGC		57	10343524	10343543	ATCACTACATTCAGACAGCA		58	NA	InUTR
Drosophila melanogaster	50	Oatp30B	FBgn0032123	FBtr0079827,FBtr0079828,FBtr0079826,FBtr0079825	3	4	4	84	2L	9537728	9537811	GCATATGGATTATTGCTACGAC		59	9537854	9537874	TTTCTTAGACTTGGTCTGTGG		59	NA	
Drosophila melanogaster	50	CG18661	FBgn0040964	FBtr0079763	3	1	1	62	2L	8998077	8998095	CGACTACATGTTCAACTCG		58	8998121	8998139	AATAGTCCAATGGAGCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13384	FBgn0032036	FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079658	1	4	6	230	2L	8385088	8386225	TACAGTCAGTATTCCCGAG		57	8386516	8386535	TTATAGGACTTATCCGTCGA		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG13793	FBgn0031935	FBtr0079508	2	1	1	86	2L	7718115	7718134	GGATTATTTCCTTCGGACAG		58	7717962	7718069	GGTTAATCACCAGAAAGTAGTG		58	NA	
Drosophila melanogaster	50	CG4495	FBgn0031893	FBtr0079405	1	1	2	105	2L	7182804	7182822	GAATCGGAAGATAGCGAGG		59	7182890	7183172	ACTCAATGATCTTCCTCTCG		58	NA	
Drosophila melanogaster	50	CG17375	FBgn0031861	FBtr0079375	3	1	1	104	2L	6805349	6805441	CTTATTCTTGGTATGTGCGAC		59	6805265	6805283	TCATCCATTCCAGCAATCC		59	NA	
Drosophila melanogaster	50	CG13771	FBgn0031844	FBtr0079323	1	1	1	118	2L	6663058	6663140	TTCTTGCAGTGTGGATCTG		59	6662958	6662976	CTTGTCTTGCAAGAAGTGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG11050	FBgn0031836	FBtr0079292,FBtr0079293,FBtr0079291	1	3	3	104	2L	6616057	6616075	TCCAAAGACGATAAGCGAG		59	6616142	6616222	CTCGTATTCCTCAAACAGCT		59	NA	
Drosophila melanogaster	50	CG13989	FBgn0031786	FBtr0079204	1	1	1	60	2L	6160720	6160738	CAAGCTCTATCTACGCTCC		59	6160762	6160780	TGGCATATAGATCTCGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slmo	FBgn0029161	FBtr0079218,FBtr0079217,FBtr0112945	2	3	3	72	2L	6047423	6047441	AACAGATGGTGCTGAAGAC		59	6047369	6047387	TCATAGTAGAGCACCTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lid	FBgn0031759	FBtr0079231,FBtr0079232	2	2	2	82	2L	5993336	5993482	GTATCAATAAGGTGCGAACTC		58	5993274	5993292	GAACAACTCTAGCTCCTCC		59	NA	
Drosophila melanogaster	50	CG34381	FBgn0085410	FBtr0112618,FBtr0112619	2	2	2	92	2L	5850180	5850198	TTGTCATCTGTATGGAGCG		59	5850254	5850843	TGACAATGACCATCCTCAG		58	NA	
Drosophila melanogaster	50	CG14005	FBgn0031739	FBtr0079160	3	1	1	62	2L	5801328	5801346	GTAGTGAAGACAGAGCCTC		59	5801284	5801305	GGGCTTGTATTCAATATTCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp28d1	FBgn0031689	FBtr0079062	1	1	1	83	2L	5211812	5211890	TGCATCCATGAAACTTTGAG		58	5211936	5211954	TTTGTTCGTCAGTTCACAG		58	NA	
Drosophila melanogaster	50	Atet	FBgn0020762	FBtr0077427,FBtr0112899,FBtr0112898,FBtr0077426	2	4	4	80	2L	4343789	4343809	CATCTCAACTACTGGTACTCC		59	4343849	4343931	GGAGAAGACAATCTGAAATGG		58	NA	
Drosophila melanogaster	50	drm	FBgn0024244	FBtr0077531,FBtr0077530	2	2	2	78	2L	3545739	3545757	TGAGATCACCTATTCGTGC		59	3545799	3546740	CTGACTACATCTGTGCTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12795	FBgn0031535	FBtr0113019	1	1	1	60	2L	3453264	3453432	ATACAGGGCAATATGAGCG		59	3453454	3453474	CCATAATGGATAAGGCTAGTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG34394	FBgn0085423	FBtr0112638,FBtr0112641,FBtr0112639	2	3	4	104	2L	3363376	3363396	CGAACTGTATTCCATAGACGT		59	3363181	3363310	TGATCATCGACAGTTCTGG		59	NA	
Drosophila melanogaster	50	CG8838	FBgn0031526	FBtr0077588	1	1	1	60	2L	3358227	3358245	AGTTCCACTCAGTTGAAGC		59	3358268	3358287	CCTTAGCTGTAGATTCTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15408	FBgn0031523	FBtr0077587	1	1	1	164	2L	3333266	3333284	AATTGCCATACCACATTCG		58	3333471	3333654	AAGGTTCCTCTGATGTTGG		59	NA	
Drosophila melanogaster	50	v(2)k05816	FBgn0042627	FBtr0077657	1	1	1	91	2L	3055305	3055386	CTCAAGGAGATTTGCAGTG		58	3055441	3055459	ATGATCTGTAGAGTGTGCG		59	NA	
Drosophila melanogaster	50	oho23B	FBgn0015521	FBtr0077621,FBtr0077622,FBtr0077623	3	3	4	164	2L	2856560	2856643	CATTACCAAGAACTTCTAAGCG		59	2856766	2856786	AGCTAATCCTGGTTCTAACTG		59	NA	InUTR
Drosophila melanogaster	50	aop	FBgn0000097	FBtr0077851,FBtr0077850	1	2	2	124	2L	2159242	2159326	CTGAGCCCAATACAAATGG		58	2159136	2159154	GACGATCTTGAAGACTCCC		59	NA	
Drosophila melanogaster	50	CG7263	FBgn0031392	FBtr0077830,FBtr0077831	2	2	2	175	2L	2153370	2153389	CAAGTCTAACGATGCAACAG		59	2153526	2153609	GCTCAAAGAACAAGCTTCTC		59	NA	
Drosophila melanogaster	50	Gr22c	FBgn0045499	FBtr0077899	2	1	1	60	2L	1791097	1791115	GAGCTCAAGGGATACATGG		59	1791055	1791074	CAGTTGTAAGAACAAGGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eno	FBgn0000579	FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905	1	4	5	83	2L	1727657	1727675	TAAATTTGTGCAGATCCGC		58	1726602	1726620	GAGTCGTAGATTTGACGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10869	FBgn0031347	FBtr0077917	2	1	2	60	2L	1585896	1585915	TGCTTACTGAGCTTCTAGAC		58	1585855	1585874	TCATTTACCTTGTTGGTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5011	FBgn0040723	FBtr0077973	3	1	1	84	2L	1200986	1201004	ATTTACCACGAACCTCCTC		58	1201052	1201070	CGTATCCTGGACCATATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lwr	FBgn0010602	FBtr0078081,FBtr0078082	1	2	2	158	2L	541831	541849	CTACACCATCTACTGCCAG		59	541691	541709	TTCCAAACAAACGCTTACC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14195	FBgn0030998	FBtr0074692	3	1	1	196	X	19104367	19104883	GATTCTTTGCAGGTATCGG		58	19104189	19104207	CATCAGTACGATGGACTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15056	FBgn0030918	FBtr0074560	3	1	1	102	X	18309563	18309654	CTCGTTCAGCGTAATTAGC		58	18309720	18309738	AAACATATCGCAACTGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32560	FBgn0052560	FBtr0113438,FBtr0074457	2	2	2	163	X	17640916	17641005	GTCATGTCCACCATAGATCTC		59	17641130	17641148	GAGTAGATCCAAAGGTCGC		59	NA	
Drosophila melanogaster	50	Ipod	FBgn0030187	FBtr0071484	1	1	1	85	X	10126135	10126153	TTACAATGTGATAGCCACG		57	10126068	10126086	ATGAATATCCGTGACCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3108	FBgn0029807	FBtr0070833	1	1	1	259	X	5673289	5673381	GCAGTCCAAATATGATGGC		58	5672409	5672427	CAATGAAGCCGTGAATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14050	FBgn0040392	FBtr0070407	1	1	1	76	X	2219481	2219499	CAATCCGACGAAGAAAGTC		58	2219338	2219441	CCTCGGTAATGAAAGACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SNF1A	FBgn0023169	FBtr0070216,FBtr0070217,FBtr0070218	2	3	3	78	X	1270213	1270739	TGTACCAGGTCATATCGAC		58	1270781	1270799	ATATAGTCGAACAGCTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41549	FBgn0085681	FBtr0114130	3	1	1	159	U	9114728	9114746	GTATCTATGTGGCAGATGC		57	9114587	9114607	CAGTACTCCTTGATAGTTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40820	FBgn0085523	FBtr0113936	2	1	1	103	U	7044978	7045145	GTAAGACACGTTCAACCAG		58	7044893	7044911	TCATCGTCGTAGAACAAGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1674	FBgn0039897	FBtr0089116,FBtr0089119,FBtr0089117	3	3	4	151	4	258044	258063	CCTAGCTAAGCAGCTTAGTG		59	258177	260949	TAGCGGATTCTTTACTGGC		59	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	3	7	7	85	4	208987	209060	CGGATCATAGACTTACGGA		57	208920	208938	ATCGAAGCATGGTTTAGTC		57	NA	
Drosophila melanogaster	50	Hsromega	FBgn0001234	FBtr0084057	2	1	3	141	3R	17122806	17123536	AAATAGGAAGCCAGTTGGG		59	17123641	17123659	ACAGCTTTCGAATAACGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2003	FBgn0039886	FBtr0085870,FBtr0085871	3	2	2	95	3R	27815036	27815111	GAGATTCCTAAGACGGTGC		59	27815170	27815188	GTTTAGCTGGAGGACTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Med	FBgn0011655	FBtr0085815,FBtr0085816	2	2	2	85	3R	27440095	27440113	TATTATCTGGATCGCGAGG		58	27440162	27440236	AGGTCAAACACCTTTATGC		57	NA	
Drosophila melanogaster	50	tll	FBgn0003720	FBtr0085709	3	1	1	60	3R	26678303	26678322	ATCAGAAATACAACAGCGTG		58	26678343	26678484	ACATGGTATAGAATGCGACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2267	FBgn0039792	FBtr0085672	2	1	1	85	3R	26454494	26454512	GAACAATATTGGAGGTGGC		58	26454373	26454445	TCTTCCAGTCAGTCATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CDase	FBgn0039774	FBtr0085649,FBtr0085647,FBtr0085646,FBtr0085648,FBtr0085645	1	5	5	80	3R	26289006	26289024	CTGCTCTATGACATCTCCA		58	26289067	26289145	TTTGATGCACAGATACAGTC		57	NA	
Drosophila melanogaster	50	ATPsyn-gamma	FBgn0020235	FBtr0085541,FBtr0085540,FBtr0085539	3	3	3	97	3R	25573740	25573758	TTCTACACCATGAAGGAGG		58	25573661	25573679	AGCTTGTCGATCATCTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0110914	3	1	9	92	3R	24732970	24732988	ACTATCACCAAGATCGAGG		58	24733044	24733434	CATCTGCAGATACTGCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6690	FBgn0038918	FBtr0084149	2	1	1	60	3R	17738147	17738166	GAAACGATTCTCAACATGCT		58	17738189	17738207	CTGCATCCTTGATAATCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	H	FBgn0001169	FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917	2	4	4	171	3R	16452162	16452180	AGTACCGACCAAATGTCTG		59	16452313	16452499	ACAGATTCAGTGGTAAGTCTG		59	NA	
Drosophila melanogaster	50	CG4459	FBgn0038753	FBtr0083849	3	1	1	111	3R	15752846	15752864	CTACCTCATCCTGTACACG		58	15752698	15752771	TGAATTCCGTTCAGTTTCG		58	NA	
Drosophila melanogaster	50	CG14306	FBgn0038628	FBtr0113245	3	1	1	104	3R	14418072	14418090	TGCCCAAAGACAAGTACTG		59	14418155	14418466	GATTAATCTCGATTAGCTTCCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	kuk	FBgn0038476	FBtr0083398,FBtr0083397	1	2	2	60	3R	12909232	12909250	GTTTCTTCATCGACATCGG		58	12909274	12909292	GTAGCGGTTCCATATCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14877	FBgn0038380	FBtr0083249	1	1	1	99	3R	11715125	11715200	ATAAACGTGATGAAGCGAC		58	11715044	11715062	TCATGAGAAAGCAGGTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31321	FBgn0051321	FBtr0082926	2	1	1	82	3R	10138093	10138172	CTTTCACCTGTCAGATTATCTC		58	10138215	10138233	TGGAACTATAGCCTCACAG		58	NA	
Drosophila melanogaster	50	l(3)87Df	FBgn0002354	FBtr0082703	3	1	1	149	3R	8856858	8856876	TTTCTCTACGGAATCAGCG		59	8856989	8857072	GACGGACCATTGATACCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG11600	FBgn0038068	FBtr0082646	2	1	1	123	3R	8463049	8463068	ATAAGATTCCTGCTATCCGT		57	8463153	8463279	GTTGAAGAAAGTGCTTTGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Rrp46	FBgn0037815	FBtr0082248	3	1	1	162	3R	6239342	6239361	CTTGGAGTGTAACTACCGAC		59	6239486	6239562	AATACTGCCACGATCTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8351	FBgn0037632	FBtr0081918	3	1	1	116	3R	4628710	4628801	GTTTCAACCTCTTCCAAGG		58	4628881	4628899	CGATCATAATTGCGTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10267	FBgn0037446	FBtr0081728	2	1	1	117	3R	2283820	2283895	ATATGCATGCGAACTATGC		58	2283976	2283994	GAAGAATTGACGACTGCAG		58	NA	
Drosophila melanogaster	50	CG12162	FBgn0037329	FBtr0078681,FBtr0078680	3	2	2	267	3R	1294736	1294809	CTAGTTCGGTCTACTGGTG		58	1295040	1295058	CAATCGAAGGAGTATCCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	Arf79F	FBgn0010348	FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0112859,FBtr0078571,FBtr0078572	1	7	7	109	3L	22863021	22863042	GGAAATGAGGATATTGATGGTC		58	22862866	22862952	CATTGAAACCAATGGTAGGT		58	NA	
Drosophila melanogaster	50	CG14187	FBgn0036938	FBtr0074868	1	1	1	113	3L	20105761	20105870	TCTTGTTGGTTTCACAGCT		59	20105666	20105684	GATAATCCACAGGTCGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MESR6	FBgn0036846	FBtr0075026	2	1	1	219	3L	19086205	19086224	TCTTTATCGTCGACTACCAC		58	19086406	19086766	TGTCCTGCATAAAGTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GNBP2	FBgn0040322	FBtr0075097,FBtr0075094,FBtr0075095,FBtr0075096	1	4	4	177	3L	18667068	18667159	CCAAGCAATTGAGAATTGCA		59	18666910	18666928	TAGTTGTGAAAGTCGTCCC		59	NA	
Drosophila melanogaster	50	CG5103	FBgn0036784	FBtr0075132	3	1	1	277	3L	18286765	18286786	CGATATGAACAAGATCTTCTGC		59	18286445	18286527	TCTGCAAATGCTTGATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5284	FBgn0036566	FBtr0075444,FBtr0075445	3	2	2	106	3L	16085786	16085862	GGATCTGATAAAGGGTTCCA		58	16085931	16085949	AACTAGCTCCAATGTCCAC		59	NA	
Drosophila melanogaster	50	CG6498	FBgn0036511	FBtr0075562	2	1	1	81	3L	15567173	15567260	CAGAGATGCAGCAGTACTC		59	15567305	15567323	TAAGAGGAATCCAAAGGCG		59	NA	
Drosophila melanogaster	50	Sox21b	FBgn0042630	FBtr0075747	3	1	1	126	3L	14118331	14118490	GCGATGTCTTCTTTAGTCTG		58	14118224	14118243	TTATCCTGAGCTATCTTGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10743	FBgn0036376	FBtr0075814,FBtr0075813	1	2	2	99	3L	13507884	13507963	CTATGAGGACAATTGCCGA		59	13508023	13508044	CATCTTTAGGTTTAGCTCTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nelf-E	FBgn0017430	FBtr0076650	3	1	1	77	3L	8592865	8592947	AGTCTGGTCATCTATTGCC		58	8592806	8592825	TCATCGTATTGAACCATCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6673	FBgn0035906	FBtr0076653	3	1	2	60	3L	8515815	8515833	GCTGACTACATGATTTGGC		58	8515773	8515792	CATCCAGAGTGTACTTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13679	FBgn0035856	FBtr0076697,FBtr0076696	2	2	2	85	3L	8196329	8196347	CTACAGCTCTCCCTATGTG		58	8196395	8196414	TATTGAGGCGTAGGATTCAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	sphinx2	FBgn0052382	FBtr0076864	3	1	1	104	3L	7433754	7433826	TTGTTGTGGCATTGATCAC		58	7433668	7433689	CGAATTTGAGTGAGGATAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lark	FBgn0011640	FBtr0076842,FBtr0076843,FBtr0076841,FBtr0076844	1	4	5	98	3L	7333781	7333799	TACAGAGATCGCATGTACG		58	7333861	7333984	GTCATAGTCCCTAAAGCCA		58	NA	
Drosophila melanogaster	50	Cpr65Aw	FBgn0052404	FBtr0077023	3	1	1	64	3L	6135395	6135413	ATACTGCCCAGATACTGAG		57	6135284	6135367	GAATGAGAAGGCATAGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr65Aw	FBgn0052404	FBtr0077023	1	1	1	60	3L	6135388	6135407	CCCAGATACTGAGATACGAC		58	6135282	6135365	TCGAATGAGAAGGCATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12027	FBgn0035585	FBtr0073372	1	1	1	122	3L	5011903	5011921	CTGAAGGAAGTCACTGAGC		59	5011744	5011819	TAGATCATCAACCGAAATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13708	FBgn0035577	FBtr0073358	1	1	1	103	3L	4832330	4832348	TTTCACATACCCAAGGAGG		58	4832168	4832263	TTGCTATATTCACCCAGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GV1	FBgn0027790	FBtr0072784	3	1	2	81	3L	1822029	1822048	CAAATACAATGCGAAGACCA		58	1822091	1822405	CAACTGCTGCAAATAGTTCC		59	NA	
Drosophila melanogaster	50	CG12090	FBgn0035227	FBtr0072705,FBtr0072704,FBtr0072703	2	3	3	151	3L	1524353	1524438	TAGTGGCTGACTTGATTGG		59	1524220	1524238	CAGGAATGTAGTGCAAAGC		59	NA	
Drosophila melanogaster	50	RabX6	FBgn0035155	FBtr0072577	1	1	1	67	3L	690792	690959	AGATCAAGCTCCAACTCTG		58	690990	691008	GTAGTACGAGGATGTGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16971	FBgn0035114	FBtr0072498,FBtr0072497,FBtr0072496	1	3	3	228	3L	224178	224985	GTGAAGTCGCAAACATGTG		59	225762	225780	TTGTTTGTGTTCCGTTCCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Cpr60D	FBgn0050163	FBtr0072334	1	1	1	125	2R	20550739	20550815	ATAGCCTTATCTTTGCCCT		58	20550632	20550650	TGATCTCATGCTGGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3065	FBgn0034946	FBtr0072153,FBtr0072155,FBtr0072154	2	3	3	60	2R	19859018	19859039	GATAAAGATTAAGCTGGAACGG		59	19859060	19859078	TTCAGGAGATACGATCTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34371	FBgn0085400	FBtr0112596	3	1	1	83	2R	19058172	19060020	ATCTCCTCACGATGTACAC		58	19058107	19058126	GATTCATGTCGAGGATAACC		57	NA	
Drosophila melanogaster	50	twi	FBgn0003900	FBtr0100130,FBtr0071953	1	2	2	60	2R	18934046	18934064	ACATAAGCTACAAGCCCAC		59	18934087	18934106	AGCTTGATCACATTGTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30193	FBgn0050193	FBtr0071947	2	1	7	101	2R	18814594	18814612	CCCAGAGTTTACTGTTTCC		57	18814675	18814773	CATATTCCTTGACATCCTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30274	FBgn0050274	FBtr0071888	2	1	1	104	2R	18712765	18713014	AAATATTCGTTCCCGACGA		59	18713082	18713100	TACCCGATTCCGTAATGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30291	FBgn0050291	FBtr0071549	2	1	1	85	2R	16896815	16896833	CACAGGAAGATTAGCAACG		58	16896697	16896769	TAGTAGTTGATATTTGTCCGGG		59	NA	
Drosophila melanogaster	50	Obp56c	FBgn0046879	FBtr0086478	3	1	2	107	2R	15587995	15588094	GATTGCTTTGTGAGCTGTC		59	15587906	15587925	CTTCTCATGCTGTATGATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Rep	FBgn0026378	FBtr0086462	3	1	1	78	2R	15380846	15380864	ACTTGACAATGAAGGTGGA		58	15380906	15380981	ATATAAACCCTCGGGACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5036	FBgn0028743	FBtr0089552	1	1	1	92	2R	13685114	13685203	TATCCGAGATTCCTAAACTCTC		58	13685256	13685274	CTAAGTTGGACTATCCGCT		58	NA	
Drosophila melanogaster	50	CG8950	FBgn0034186	FBtr0087013	3	1	1	67	2R	12948300	12948374	CAGGATCTTCAGGATCCTG		58	12948251	12948270	AATTCATCTTTGACGGTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Menl-2	FBgn0029153	FBtr0100603,FBtr0100601,FBtr0100602	2	3	3	76	2R	12304508	12304527	CGTTTATGATGACGAAATGG		57	12304388	12304469	GGCCCTTATTGTACTTTCC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8441	FBgn0034086	FBtr0087247	1	1	1	179	2R	12073248	12073326	GAAGAATCCGGATAAGCCC		59	12073087	12073105	TTCTGGATGTTCTTCTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8102	FBgn0034007	FBtr0087393	2	1	2	115	2R	11185411	11185486	AGCAGTGGGAATTTCTACG		59	11185314	11185333	TTCATGTCGCAGGATATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34187	FBgn0085216	FBtr0112380	2	1	1	83	2R	11181048	11182511	AGACCATCATCAACTATTCCG		59	11180985	11181006	CATGGTTCGATGTGAATTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12442	FBgn0033770	FBtr0113076,FBtr0087849	2	2	2	69	2R	8588067	8588141	GAACTAAGTCTACTCCCGC		59	8588174	8588192	GCTCGTAGATCTCCTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13148	FBgn0033767	FBtr0087847	3	1	2	62	2R	8574565	8575103	TAATGTCGAGGATAATGAACCC		59	8575126	8575144	TCATCATCCAGGTCATCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hey	FBgn0027788	FBtr0088869	3	1	1	280	2R	3884918	3885349	CTCCAAGGAACAAATCTCG		58	3883915	3883933	TGATATGGTAGTCCATGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Dgk	FBgn0085390	FBtr0112581,FBtr0112579,FBtr0112580	3	3	4	164	2R	3732585	3732603	GAAGTTCCAGTACATGCTC		57	3732249	3732396	AACTCTATGGAGTCCATGG		58	NA	
Drosophila melanogaster	50	tor	FBgn0003733	FBtr0112838,FBtr0112837,FBtr0088938	1	3	3	80	2R	3596046	3596064	ATGCCACCTACATAATCCG		59	3595832	3596003	GAAAGTTGTCATCAGACAGG		58	NA	
Drosophila melanogaster	50	CG34200	FBgn0085229	FBtr0112393	3	1	1	112	2R	1645327	1645430	AATGGATGCTGGTCAAGAG		59	1645505	1645524	TTGGTAGTACTCTTAGGCTG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG31601	FBgn0051601	FBtr0085947	3	1	1	75	2L	22041649	22042109	CAGCTAAGGATACCTACCC		58	22041592	22041610	CCGAACGATATTTCTAGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33846	FBgn0053846	FBtr0091850	1	1	1	69	2L	21507017	21507035	AATTTAAAGGAACGTGGCG		59	21507067	21507086	CGCATTTATAAGTGGCAGTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10186	FBgn0032797	FBtr0081280,FBtr0081281	2	2	2	81	2L	19511020	19511040	TTAGTTTCTACAACGACCTGG		59	19510897	19510980	TCCATACATCTCGATATGATGG		59	NA	
Drosophila melanogaster	50	CG5325	FBgn0032407	FBtr0080327,FBtr0080326	3	2	2	106	2L	12094355	12094376	TGTCTCCAAGTATTCTGATAGC		59	12094443	12094461	CAAACATGCTGGCTATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5317	FBgn0032404	FBtr0080296,FBtr0113037	2	2	2	78	2L	12056424	12056508	GTCAGACAAATATGCGGTG		58	12056550	12056568	CAGAATTCTCCTCTTGCGA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31757	FBgn0051757	FBtr0080321	1	1	1	140	2L	11835097	11835115	GATGCTCTTAACAAAGCGG		59	11830831	11833279	CCTTGATTCGTCTATGAAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mre11	FBgn0020270	FBtr0080213	1	1	1	60	2L	11284101	11284186	GTGACAGTCAGTAGTACGC		59	11284209	11284228	CCATAAGGCTACTAAGGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31870	FBgn0051870	FBtr0080137	1	1	2	135	2L	10790357	10790434	TAGGAACTATGGACCTGGA		58	10790533	10790551	CTTATAAGCAGCAGGACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6415	FBgn0032287	FBtr0080108	3	1	1	138	2L	10704076	10704150	TAATGAAGACAGCTGTGGA		58	10704252	10704270	TTCCCGGTAAGTAGTTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7384	FBgn0032262	FBtr0080135	3	1	1	238	2L	10509631	10509711	CACAGAACACATCAATGCC		59	10509196	10509216	CTATTATGGGACCCATCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	bib	FBgn0000180	FBtr0079929	2	1	1	96	2L	9987719	9992264	GCTTTATGGCGTAACTGTG		59	9992324	9992342	TTCCACACCGAATCTTTCC		59	NA	
Drosophila melanogaster	50	hoip	FBgn0015393	FBtr0079846	2	1	1	70	2L	9699936	9700017	TGACTGAGGAAGTTAATCCC		58	9700050	9700068	CAAGTTCATGATCTTGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gcm2	FBgn0019809	FBtr0079838,FBtr0079837	3	2	2	85	2L	9611426	9611446	GATTAGCAAGGTTCTTAAGCG		59	9611493	9611570	TGCCACAGGCATTATACTG		59	NA	
Drosophila melanogaster	50	CG17292	FBgn0032029	FBtr0079648	2	1	2	115	2L	8372615	8372694	AAACAAATCCAGGCTCCTC		59	8372898	8372918	CGGTTAGGTCATAGATATCGC		59	NA	
Drosophila melanogaster	50	Hrb27C	FBgn0004838	FBtr0079347,FBtr0079348,FBtr0079346	2	3	3	170	2L	6924245	6924263	ACCTTCTTTAACCGCTACG		59	6924397	6924699	CTTCTTGATTTCGACCTGC		58	NA	
Drosophila melanogaster	50	ade2	FBgn0000052	FBtr0079220,FBtr0079221,FBtr0079219	3	3	3	231	2L	6042011	6042092	TGTCGGATCTTCTTCAAGG		58	6041798	6041819	CTGCCAACAAATCCTATAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14013	FBgn0031720	FBtr0079121	3	1	1	70	2L	5553326	5553398	CAAGATACTATCGACCATCG		57	5553275	5553293	CTATGTAGCCGGAGATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14021	FBgn0031702	FBtr0079078,FBtr0079079	2	2	2	102	2L	5331328	5331349	GCGACATCTACTATCTAATGAC		57	5331184	5331265	CTCAGCAGCTTGTTATCTG		58	NA	
Drosophila melanogaster	50	CG14040	FBgn0031676	FBtr0079009	3	1	1	83	2L	5053278	5053296	ATGGCTACAATACCGTCAC		59	5053343	5053419	TGTTGTCTCGGCAATACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	morgue	FBgn0027609	FBtr0077457	1	1	1	117	2L	4444547	4444565	CAGTTGCTAAAGGAACTGG		58	4444386	4444466	AGCAGGTGTTACTATTCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17257	FBgn0031495	FBtr0077651,FBtr0077652	1	2	2	101	2L	3031809	3031827	TTTGCCATCCGTTTATGGT		59	3031892	3031970	CAAAGGAGATTCCGAGGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18557	FBgn0031470	FBtr0077689	3	1	1	76	2L	2845450	2845529	AAAGTTAGTGATCGGTGCT		58	2845392	2845410	CAACCTCTTCTACTGTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31679	FBgn0051679	FBtr0077809	1	1	1	99	2L	2237966	2238049	GTTATATCCGATGTTATCCACC		58	2237888	2237906	TGATAATACCAGCTCCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5565	FBgn0031335	FBtr0077944	2	1	1	62	2L	1355745	1355763	CACCAAGAAGTGTTACTGC		58	1355629	1355719	TCTATCAAGGTTCCATCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR31480	FBgn0051480	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	l(1)G0196	FBgn0027279	FBtr0112508,FBtr0077354	2	2	5	168	X	21905422	21905440	GATATCAACGACCGTAACG		58	21905572	21906078	CTCTGTTGGATATTGCTCC		57	NA	
Drosophila melanogaster	50	Lsd-2	FBgn0030608	FBtr0073967	2	1	3	94	X	14968002	14968022	CCTCCTTGAATACTACTTCCC		59	14967383	14967401	CAGAACTCTTGCCATTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	ogre	FBgn0004646	FBtr0071037,FBtr0071036	2	2	2	79	X	6870079	6870097	TACACCTACTACCAGTGGG		59	6869302	6869321	TTATTCCACAGGAATTTGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	3	13	13	81	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567131	2567221	CTGTATTGAGAGCTCATGCT		59	NA	
Drosophila melanogaster	50	Sox102F	FBgn0039938	FBtr0100600	1	1	2	93	4	844189	844210	GAAGATCAAACGAATGAGAAGG		59	823944	844135	CGTAATGAGCCTGACTGAG		59	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	3	14	14	110	3R	27690344	27690864	TAAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	CG5484	FBgn0039450	FBtr0085037,FBtr0085039,FBtr0085038	1	3	3	88	3R	22544580	22544653	ATGCATAAGGATTGGTCCC		59	22544705	22544723	GTGGGCAGATAGAGATCTG		58	NA	
Drosophila melanogaster	50	Myo95E	FBgn0039157	FBtr0084579,FBtr0100518,FBtr0100519,FBtr0100516	1	4	7	110	3R	19982894	19982994	AGTTTATATCGTGTCGCCC		59	19982802	19982820	CTGTCTGATCTTCCACTGG		59	NA	
Drosophila melanogaster	50	cnc	FBgn0000338	FBtr0084397,FBtr0084394,FBtr0084392,FBtr0084395,FBtr0084396,FBtr0084393	1	6	7	67	3R	19013518	19013609	ATGTCTTCCAGTACCTACG		58	19013469	19013487	CTGTTGCAAACTGTAGTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17618	FBgn0040587	FBtr0113328	3	1	1	60	3R	18555460	18555480	GTATTGGTGATGCTTGTATCC		58	18555556	18555577	ATACTGGATATACGATCAAGGC		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	lbe	FBgn0011278	FBtr0084091	1	1	1	67	3R	17267866	17267884	GAAGGACTTCGATAGCGTC		59	17267817	17267835	TTAGGTCGTTCACGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14306	FBgn0038628	FBtr0113245	2	1	1	61	3R	14418150	14418168	GCATACGGAAGCTAATCGA		59	14418481	14418501	GTTTAAAGTCGTGGGAATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9813	FBgn0038143	FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767	2	6	6	120	3R	9199920	9200008	TGGCAAAGGTAATGTTTGC		59	9199818	9199836	AAGTCGATGGGTATGACAC		59	NA	
Drosophila melanogaster	50	l(3)neo38	FBgn0086910	FBtr0082533,FBtr0110877,FBtr0110876	1	3	3	120	3R	7596967	7596985	CTCCATACCGTACTCACAG		58	7595815	7596883	CTGGTTGAGGACTTCTTCC		59	NA	
Drosophila melanogaster	50	CG33056	FBgn0053056	FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311	2	5	5	131	3L	21191820	21191990	GGAACATATGAGGGAGCAC		59	21191707	21191726	ATTATGTCCACGCTATCCTC		59	NA	
Drosophila melanogaster	50	Mkp3	FBgn0036844	FBtr0075035,FBtr0075036	3	2	2	156	3L	19062985	19063095	TTAATGGGTCTTAGGTCCC		57	19062847	19062865	GTCCAGGGATTATCTCCAC		58	NA	
Drosophila melanogaster	50	CG8065	FBgn0036075	FBtr0076296	1	1	1	68	3L	10209611	10209631	AACTTCCATCTATATCGGAGC		59	10210143	10210161	TTTCATCAGATCGGAACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	orb2	FBgn0035938	FBtr0076563,FBtr0076561,FBtr0076562	1	3	4	120	3L	8942757	8942775	TCGCTCAAGTTACCAAAGG		59	8942279	8942297	CAGTTCCTGACGATGTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ImpL3	FBgn0001258	FBtr0077008	2	1	1	186	3L	6253759	6253778	TCCAACTTTCTGAAGAACCC		59	6253524	6253611	TATCGGGACTGTACTCTACC		59	NA	
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	2	9	15	80	3L	3083796	3084813	TCGCCACTTATATGAATCGA		58	3084853	3084874	CCAAATTAAGTAGTGAGAACCC		58	NA	
Drosophila melanogaster	50	Unc-89	FBgn0053519	FBtr0113464	1	1	2	80	2R	19900368	19900444	AAGTCAAGATGCTTTGTGC		58	19900306	19900327	GAACTCTAGTATATCGATGGGC		59	NA	
Drosophila melanogaster	50	Mes4	FBgn0034726	FBtr0071827	1	1	1	64	2R	18299680	18299698	GATCCGGATCTGCATATGG		59	18299726	18299744	AATAGTTCCACTGCCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15661	FBgn0034605	FBtr0110814,FBtr0071624	2	2	2	91	2R	17103410	17103490	TTCTACTGTGATCAGCACC		58	17103337	17103355	AGGATTTCCTCGGTAATCG		58	NA	
Drosophila melanogaster	50	CG30296	FBgn0050296	FBtr0113369,FBtr0113370	2	2	5	115	2R	16910985	16911003	ACCTATCCAATGGACATGC		59	16911082	16911489	CAATTTGGACGTCAGTTCC		59	NA	
Drosophila melanogaster	50	CG16739	FBgn0034505	FBtr0086286	3	1	1	63	2R	16229792	16229810	CTGTACTTCACCAATTGGC		58	16229837	16229855	CATAGAGCAATCCCAAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dg	FBgn0034072	FBtr0087258,FBtr0087257,FBtr0087256	3	3	3	132	2R	11972593	11972678	TTTATGGCCTACCTCTGGA		59	11972479	11972497	TTAATGGTCCTAACCGCTC		59	NA	
Drosophila melanogaster	50	CG34187	FBgn0085216	FBtr0112380	2	1	1	68	2R	11180982	11181000	TTCACATCGAACCATGTCC		59	11180932	11180950	CTTGACAGGCTTCTTTACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpn6	FBgn0028689	FBtr0087474,FBtr0087475	2	2	2	130	2R	10638752	10638770	CTTTGAAGGATTCGACAGC		58	10638491	10638658	AGGTAATAGCCAGCTTTCC		59	NA	
Drosophila melanogaster	50	CG11784	FBgn0033381	FBtr0088579	3	1	1	132	2R	5010058	5010133	GAGGAATTTGTCAAGCTAAACC		59	5010225	5010244	GATAGAGTTGGTCATTCCCG		59	NA	
Drosophila melanogaster	50	Df31	FBgn0022893	FBtr0085919,FBtr0085920,FBtr0100293	1	3	3	254	2L	21627955	21627973	ATGAGAAGAAGGACGAGGA		59	21627635	21627653	GAACCTCATCCTTTGTGCT		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Hr38	FBgn0014859	FBtr0081397	3	1	2	62	2L	20690174	20690192	TGAGGCTTACTAACCAAGC		59	20689589	20690149	AACTAAAGGAGCTATTGGGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG31809	FBgn0051809	FBtr0113414	2	1	1	81	2L	16853857	16853965	TCATGGATTACAGTACGCC		59	16853794	16853813	CATTCGCTTAAAGAGTTGGT		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG4908	FBgn0032195	FBtr0079950,FBtr0079949	1	2	2	60	2L	10223857	10223875	TCTAGCTTTATAACCGCCC		58	10223899	10223917	ATAGGTTTAGCAGGCAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pes	FBgn0031969	FBtr0079553,FBtr0114550,FBtr0079552	3	3	3	119	2L	7988318	7988403	CCGGGTATTACCTTGTATGAG		59	7988219	7988237	GACAATTAGCGGAACAAGC		59	NA	
Drosophila melanogaster	50	CG5181	FBgn0031909	FBtr0079467	1	1	1	60	2L	7409419	7409440	GATATTGTCAGACTGACAAAGG		58	7409380	7409399	AATAAAGGGTCAGACAATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF-4a	FBgn0001942	FBtr0079178,FBtr0079175,FBtr0079177,FBtr0079176	1	4	4	89	2L	5984935	5985036	ATTCATAGAATTGGTCGCG		57	5985089	5985107	ATCCTTAAGGATTCGTCGA		57	NA	
Drosophila melanogaster	50	morgue	FBgn0027609	FBtr0077457	2	1	1	60	2L	4443838	4443857	TTGTCAACATAATACCCGTC		57	4443797	4443815	GACATGTCGTCCAAATAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34394	FBgn0085423	FBtr0112638,FBtr0112641,FBtr0112639	1	3	4	80	2L	3363352	3363370	GTGTTAATGCAGGCATTCC		59	3363179	3363309	TGTGATCATCGACAGTTCTG		59	NA	
Drosophila melanogaster	50	CG13692	FBgn0031254	FBtr0078057	2	1	1	60	2L	422032	422052	TACAGATCCTGGAAATTGGAG		59	422074	422092	ACATCCTCGAAATACTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bap	FBgn0010380	FBtr0074789	3	1	1	84	X	19626776	19626794	AATGGTTTGGATCATTGGC		58	19626842	19626925	ATCCTGGAATCCTTCAAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6340	FBgn0030648	FBtr0074039	1	1	4	282	X	15377319	15377337	AACAATAACTATGGCAGCG		58	15379284	15379365	CCTTGCTGTGATTCTTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG2574	FBgn0030386	FBtr0073644	1	1	1	64	X	12303468	12303555	GCCAAGGTTCTACTTTCCA		59	12303583	12303601	ATGACTAGCGGATCATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr98a	FBgn0039520	FBtr0085184	3	1	1	97	3R	23314953	23314973	CAGCTCTAAGAAGTCTAAACC		57	23315031	23315106	GAACTTTCCCAGCATTTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	scrib	FBgn0026178	FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085020,FBtr0100181,FBtr0085019	2	7	7	123	3R	22392940	22393020	GATGAGTTTGAATCCGATCG		58	22393215	22393233	GGACACGCTTATTCTTCAG		58	NA	
Drosophila melanogaster	50	zen2	FBgn0004054	FBtr0081671	1	1	1	72	3R	2569654	2569739	ATGATGTATCCTTGCGTCG		59	2569600	2569618	TTGATTTCTCCGAAGACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pb	FBgn0051481	FBtr0089279,FBtr0089278,FBtr0089277,FBtr0089276	2	4	4	80	3R	2536680	2537244	GATGATCAGTCCGATAGTAACTC		59	2536622	2536641	GGAATCGGGTATATCATCGG		59	NA	
Drosophila melanogaster	50	CG7372	FBgn0036522	FBtr0075570	3	1	1	199	3L	15614517	15614535	AACCATCCACGATAAGCAG		59	15614698	15614774	TTGAATTGGTGGGTTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18769	FBgn0042185	FBtr0076973,FBtr0076975,FBtr0076970,FBtr0076974,FBtr0076972,FBtr0076971	2	6	6	104	3L	6584089	6584166	TTATTGCTCAGCTCTACGA		58	6584234	6584252	GTGGTTCTAGTTCATAGCG		57	NA	
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567,FBtr0079574	2	9	9	94	2L	8107088	8107106	TTCAAATACAGCCGTTGTG		58	8107164	8107246	TTACATTGGCAAAGGTCCA		59	NA	
Drosophila melanogaster	50	Tsp	FBgn0031850	FBtr0079313,FBtr0079311,FBtr0114488,FBtr0079312,FBtr0079314	2	5	6	96	2L	6701752	6701770	CATCACTCTCACTCGATCC		59	6700488	6700562	CGACGAGGTCTAATGTGTC		59	NA	
Drosophila melanogaster	50	CG5397	FBgn0031327	FBtr0077920	3	1	1	187	2L	1240784	1240803	CATGTATCTATCGATGTCGC		58	1240952	1241051	TACTCCTTAAGCAATTGACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me28S-A774b	FBgn0086078	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:K2:42Ed	FBgn0011895	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:K2:42Ae	FBgn0011891	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG40486	FBgn0069972	FBtr0111188,FBtr0111187	2	2	2	72	X	22361363	22361381	CTCATTAACAGCCTAACGG		57	22361309	22361327	GATACATGTTGAGCACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14476	FBgn0027588	FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058	2	5	5	95	X	21472298	21472388	CCAGTAGATGATTTCAAGATCC		58	21472224	21472242	GTGCAACATCAAGGTTGAG		59	NA	
Drosophila melanogaster	50	CG1518	FBgn0031149	FBtr0077264	3	1	1	113	X	20923020	20923040	TACTAGATCCATCCTATGCCA		59	20922617	20922945	AGAGGAAGACCAGGATCTG		59	NA	
Drosophila melanogaster	50	Mgstl	FBgn0025814	FBtr0077242	3	1	2	68	X	20913602	20913623	ATGGTCGGCTATATTGATACTC		59	20913652	20913670	GTAAAGAAGCGCATGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0112569	1	1	5	125	X	20663759	20676866	GAGTAGATCATCGGTGTCTC		59	20663653	20663671	GGATTTCCTACGTACTGCC		59	NA	
Drosophila melanogaster	50	CG1835	FBgn0031127	FBtr0077277	3	1	2	137	X	20540413	20540431	TAAGGAGCTTGCCTTTGAG		59	20540596	20540614	TCTCTTCTGCTTATGCCAG		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	Pbprp2	FBgn0011280	FBtr0077303,FBtr0077304	3	2	2	185	X	20291523	20291615	CTGCAGATAATGGATGAATCC		58	20291826	20291844	CTCGTAAATGCATTCCTCG		58	NA	
Drosophila melanogaster	50	Peritrophin-A	FBgn0022770	FBtr0077335,FBtr0077336	3	2	2	61	X	20119014	20119032	CTAGGTTTACACTGGTTCG		57	20119056	20119075	AAGTAGTTGGTTAGTCGGAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14205	FBgn0031034	FBtr0074730	3	1	1	81	X	19487506	19487525	TATCGATACTGTGCGTTCTC		59	19487568	19487651	CACTTATTTAGCGGTTGGTC		58	NA	
Drosophila melanogaster	50	mRpS14	FBgn0044030	FBtr0074785	1	1	1	60	X	19373535	19373553	AGTTGTCCACAAGTACAGG		59	19373493	19373511	CTTATTGTAGTCGGCGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tgy	FBgn0030984	FBtr0100167,FBtr0074702	2	2	2	73	X	19020044	19020062	TACGCCTACTACAATCCGA		59	19019628	19019646	CTGTGCACATAGTGAAAGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	tgy	FBgn0030984	FBtr0100167,FBtr0074702	3	2	2	74	X	19020045	19020063	GTACGCCTACTACAATCCG		59	19019628	19019646	CTGTGCACATAGTGAAAGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG32544	FBgn0052544	FBtr0074644	1	1	1	60	X	18754563	18754581	CAACAAGACGAGAGTCTGG		59	18754605	18754623	ACAGGATGCTATTGAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7101	FBgn0030963	FBtr0074639	1	1	1	60	X	18725005	18725024	TTTCTTTACCGTCATGTTGC		59	18725047	18725065	ACATGTCGCAGTAGAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6961	FBgn0030959	FBtr0074660	3	1	1	238	X	18681362	18681439	TCGAGGATGAGGAAATATCTC		58	18681144	18681162	CTCCTTGGTGCTATTTGAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG6617	FBgn0030944	FBtr0074615	3	1	1	83	X	18544260	18544278	CCATCATCAAGGAGGAGTG		59	18544195	18544213	AGTAGTTCATGATCAGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-his	FBgn0027087	FBtr0074594	1	1	2	99	X	18412109	18412868	TGAGAATTGAAGTGCTGAC		57	18412929	18412949	AAGTCATACCTCATCGATAGG		58	NA	
Drosophila melanogaster	50	CG6867	FBgn0030887	FBtr0089574	2	1	1	85	X	17922031	17922119	TGACTGTGGAACTCTACTC		57	17922168	17922186	ATTGTCGGAGATTAAACGC		58	NA	
Drosophila melanogaster	50	CG12986	FBgn0030868	FBtr0074474	1	1	1	295	X	17713593	17713611	TGAGCATCTTTATCGCTGG		59	17713316	17713334	GAATATCCTCAGGCGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5172	FBgn0030830	FBtr0114540	2	1	2	298	X	17115619	17115637	CTGATCGCCTTAACCTCAG		59	17116321	17116339	CCATAACCTCCTTGTCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4829	FBgn0030796	FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337	2	5	5	92	X	16718723	16718742	GAGAAGGGATACCATGTGTC		59	16718794	16718964	CAAATAGATTTGGTACTGCTCG		59	NA	
Drosophila melanogaster	50	CG9672	FBgn0030777	FBtr0074361	1	1	1	60	X	16600451	16600469	CTACAGCACTCTGAAGACC		59	16600409	16600429	ACTGAAAGTAATCTCCTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Axs	FBgn0000152	FBtr0074372,FBtr0100417	1	2	2	80	X	16576145	16576242	CACGATATCCTGTATCTCGA		58	16576084	16576102	AAAGTAGTTCCGGATGTCC		58	NA	
Drosophila melanogaster	50	CG8959	FBgn0030691	FBtr0074192	2	1	1	146	X	15677084	15677102	CGTCAGTATCATATCACCG		57	15676900	15676918	TAAATTACCAGATCGCGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	Grip128	FBgn0026433	FBtr0074075	3	1	2	205	X	15365293	15365420	GACAGCTTAAGTGACTGGT		59	15365106	15365124	ATCCGAAAGTCGTAACTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15027	FBgn0030611	FBtr0073965	3	1	1	74	X	14979477	14979496	GATTAACCTAAAGCAGTCGA		57	14979422	14979440	GTCATGGTGATCACATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15890	FBgn0030576	FBtr0073939	1	1	1	82	X	14653323	14653343	CATTCTCAATGTCTGCTTCTC		59	14653154	14653282	CGTAGAATCCAATTTGCTTGAG		59	NA	
Drosophila melanogaster	50	NetA	FBgn0015773	FBtr0073942	1	1	1	80	X	14498822	14498840	ATGACCTGGATCATACCGA		59	14498642	14498781	ACCCAAGATCAAATAGGATCTG		59	NA	
Drosophila melanogaster	50	CG13402	FBgn0030538	FBtr0089267	2	1	1	60	X	14066339	14066357	TATCGACGAAATCGAGGAG		58	14066297	14066317	GGTTAACACAACCTTACTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12479	FBgn0040871	FBtr0073869	1	1	1	171	X	14045895	14045913	ACATCAATCGATGCCTCTC		59	14045742	14045760	TTTACATCGTTGAGCTCCT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	mus101	FBgn0002878	FBtr0073817	3	1	1	60	X	13617195	13617213	AGTATAAGGCAGCCATACG		58	13617237	13617255	CTATCGAAGATCCATTCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2691	FBgn0030504	FBtr0073848	2	1	1	87	X	13515708	13515729	CATTCTGAGGAACGATAAATCG		59	13515577	13515660	GCGAAGTAGTTCGTAGGTC		59	NA	
Drosophila melanogaster	50	CG1681	FBgn0030484	FBtr0073778	3	1	1	161	X	13302599	13302698	GATAATGCGGTGAATCTCG		58	13302822	13302912	ATTGTAGCCAATGGATTTCG		58	NA	
Drosophila melanogaster	50	CG15727	FBgn0030410	FBtr0073709	3	1	1	60	X	12522734	12522752	GAACCTGATGAACTTGACG		58	12522692	12522711	CAGAGCCTATATCCAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32653	FBgn0052653	FBtr0073665	3	1	1	60	X	12425049	12425067	AAGTGTACTTCGAGGTAGC		58	12425007	12425026	AGGACTAAGTGATCTGTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0073589,FBtr0073588	2	2	10	127	X	11856269	11856287	GAAGATCATTGGATTCGGT		57	11848305	11854113	TTGAGTTCGAATCATCGTG		57	NA	
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489	2	8	12	100	X	11291936	11292011	ATATAACCAGAGAACCGCG		59	11292075	11292093	GGACACATAGATACCCTGG		58	NA	
Drosophila melanogaster	50	dsh	FBgn0000499	FBtr0073454,FBtr0073455	3	2	2	60	X	11251507	11251525	ACGACAGTATTATTGCCGA		58	11251549	11251567	AGGTTATTCTGGTCCAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15211	FBgn0030234	FBtr0112977,FBtr0073376,FBtr0112975,FBtr0112976	1	4	4	179	X	10672153	10672254	ATATTCTCGGAGCTGATCAC		59	10672396	10672414	CAGGAACAGGAAGTACGTG		59	NA	
Drosophila melanogaster	50	CG2124	FBgn0030217	FBtr0071491	2	1	1	60	X	10491016	10491035	TGGGCTTCTTTAAGACACAG		59	10491057	10491076	TGATAGAGTTGCGTTAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12644	FBgn0040940	FBtr0071434	2	1	1	206	X	10052889	10052907	CCAAGACAATGTCATTGGC		59	10053077	10053095	ACTCACCATTCACATAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	APC4	FBgn0052707	FBtr0071285	2	1	1	82	X	8977506	8977584	GGAGAACCTAGGAACTTACAC		59	8977627	8977646	CAATATTGGTCATTGGCTGC		59	NA	
Drosophila melanogaster	50	rdgA	FBgn0085373	FBtr0112550,FBtr0112552	2	2	3	95	X	8917351	8918116	GTGGAAGAGCCCTATACTG		58	8918298	8918316	CCTTGTTCATGTAGTGCAC		58	NA	
Drosophila melanogaster	50	CG33181	FBgn0053181	FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451	2	5	5	82	X	8409361	8409381	ATTATCGGGATTATACCACCG		59	8409425	8409512	GTCTTCGCATAGGGAACTC		59	NA	
Drosophila melanogaster	50	CG11190	FBgn0030035	FBtr0071175	3	1	1	61	X	8299849	8299869	TCTATTCCGTCTACGATATGC		58	8299808	8299826	GACATTAAACAGCCGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trxr-1	FBgn0020653	FBtr0071168,FBtr0071167,FBtr0071169	2	3	3	104	X	8140380	8140398	AAAGATCAAGCCAGACTGG		59	8140466	8140554	TACTCCACTTTCTTGTCGC		59	NA	Nonspecific
Drosophila melanogaster	50	mys	FBgn0004657	FBtr0071105	3	1	1	118	X	7958771	7958789	CTATGTCTCGACCATTCCC		59	7959557	7961104	TCACCTCGTTAGAGAAGCT		59	NA	
Drosophila melanogaster	50	CG12155	FBgn0029957	FBtr0071071	3	1	1	60	X	7624716	7624734	AACCAATCGTCATGATTCC		57	7624758	7624776	CTCTGTTACATCCACCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12689	FBgn0029952	FBtr0071081	3	1	1	62	X	7479777	7479798	GATACGAATAGTTGAACACCAG		58	7479736	7479754	GAGTTCACAGGTCTTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	2	12	15	239	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978621	6978640	AATTGATCTACCTCTGTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14439	FBgn0029898	FBtr0070960	2	1	1	120	X	6649035	6649053	TGTGATGAACAACATTGGC		58	6649136	6649215	GAGAATAGAACTGATGCCGT		59	NA	
Drosophila melanogaster	50	CG5937	FBgn0029834	FBtr0112952,FBtr0070868	1	2	2	60	X	5938617	5938637	GTATGCTATGTGTTTGGATGG		59	5938727	5938747	CAGATTCAAACTGTTGCTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6978	FBgn0029727	FBtr0070715	3	1	1	60	X	4679151	4679170	GCCCACCTATATGTACAGAG		59	4679190	4679211	CGAGGATATTATGCCATTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cib	FBgn0026084	FBtr0070641,FBtr0070639	3	2	3	200	X	4004033	4004192	CGATAAGGAAGCCATCGAG		59	4004356	4004374	TCTCAGATCTCGGATCTCG		59	NA	InUTR
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514	1	9	14	83	X	3215176	3215194	TCTATATCGCTCCGATTCG		58	3215240	3219968	TCTTTAAACCTTTCGCTAGC		58	NA	
Drosophila melanogaster	50	CG17959	FBgn0029647	FBtr0070557	3	1	1	109	X	2841460	2841481	CCAAGAGATATCTCAAGAAGCT		59	2841551	2841569	TAGGTAGTACTCCTCCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34052	FBgn0054052	FBtr0100107	3	1	1	98	X	2216181	2216200	CAGTACGGTACAGTAAGGAC		59	2216038	2216056	TTTGGGCTGAAGTACAGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG2924	FBgn0023528	FBtr0070412,FBtr0070413	2	2	2	81	X	2160700	2160866	GCAGTACAAGCAAGAAGGA		59	2160637	2160658	TAGTCTTGTCTCTGACTTTGAC		59	NA	
Drosophila melanogaster	50	CG14801	FBgn0024988	FBtr0070305,FBtr0070304,FBtr0070306,FBtr0070307	2	4	4	140	X	1737990	1738010	GTTTGATCATATCCACAAGCG		59	1738112	1744662	AGGAGTTTGTCTTCGATGC		59	NA	
Drosophila melanogaster	50	CG14811	FBgn0029590	FBtr0070373	1	1	1	60	X	1715817	1715835	TTCTCCCAAGCTTGTAACC		59	1715775	1715794	TGATAGAAATACGACGAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32809	FBgn0023531	FBtr0089815,FBtr0089814	3	2	2	83	X	1579765	1584245	CCACAAATCAAAGATTGGC		57	1579700	1579718	TCTGAAGAGTACATGCCTC		58	NA	
Drosophila melanogaster	50	l(1)G0431	FBgn0028274	FBtr0070297	1	1	1	89	X	1356601	1356686	TTATGGATACAATCGCGGT		58	1356530	1356550	CCATTGACGTAGTCTTTAAGC		59	NA	
Drosophila melanogaster	50	CG14785	FBgn0027795	FBtr0070231	1	1	1	257	X	1350071	1350089	AAACTGTTACCTCAGCGTC		59	1349705	1349723	TTAGACTTGAGGGTGATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13362	FBgn0029531	FBtr0070150	3	1	1	80	X	644741	644817	AAAGACAACAACGGAAACC		58	644679	644697	GTGTATGTGCGGAAATAGG		58	NA	Nonspecific
Drosophila melanogaster	50	Suv4-20	FBgn0025639	FBtr0070151	1	1	1	105	X	547480	547498	TACGATATAGCCATCCAGC		58	547262	547411	ATCGGACGATATGATCGTG		59	NA	
Drosophila melanogaster	50	svr	FBgn0004648	FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070082	2	5	7	105	X	396960	398709	AACTTTGATGGCAACTTCC		58	398778	398796	GGTGTTCGTATTTAGTCGG		57	NA	
Drosophila melanogaster	50	CG41020	FBgn0085556	FBtr0113969	2	1	1	60	U	7799383	7799401	AAAGACAGTTGAAGATCGG		57	7799422	7799443	TCTTAACTCAGTTACATCCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40339	FBgn0058339	FBtr0113866	2	1	2	71	U	1062794	1062814	TTGTATACTCCTGTTCTCTGG		58	1062845	1062865	TCGTTATCTCCACATAACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40207	FBgn0058207	FBtr0113835	3	1	1	86	U	882428	884776	TCACAGCTAACTTGGTTCG		59	884824	884844	TCCGAATTCCAAAGTCTAGAC		59	NA	
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131	2	5	5	80	4	370302	370370	GATTCACCGCTTAAAGCAG		59	370240	370259	CTCAGTTGCTAATGCAAGTG		59	NA	
Drosophila melanogaster	50	Ptx1	FBgn0020912	FBtr0089390,FBtr0089389,FBtr0089391	1	3	3	251	3R	26750052	26750070	GAAACCACGATCAAGACAG		58	26750285	26754871	ATTCTTGAACCACACCCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2246	FBgn0039790	FBtr0085674,FBtr0085678,FBtr0085673	2	3	6	102	3R	26419561	26419843	GACGCCTAGAAACTCTACTC		59	26419478	26419496	CTTGACCTTGACAATGTGC		59	NA	
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634	3	4	5	103	3R	26212311	26213196	AGATTTCAAGTGCTCCCTG		59	26212226	26212244	TGATCTCCTCCTGGATCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG31033	FBgn0039705	FBtr0085529,FBtr0085528	3	2	3	84	3R	25658970	25658988	CTACTGGAGCGACTTATGC		59	25658060	25658924	CCGAACGTTTCCTAATTATGC		59	NA	
Drosophila melanogaster	50	CG14515	FBgn0039648	FBtr0085389	2	1	1	163	3R	25023678	25023696	CCAAGACCATTCCAGAGTG		59	25024840	25024858	TTTGTTCACAATGTCGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14528	FBgn0039611	FBtr0085329	2	1	1	60	3R	24702238	24702256	GAGAACATACCGAAGTCGT		59	24702280	24702298	TCAGAAGTGCTTTGTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Noa36	FBgn0026400	FBtr0085320	1	1	1	86	3R	24424304	24424322	ACAAGCTGGGTCAATACTC		59	24424236	24424254	TCTTGTCGTACTTGAAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wdb	FBgn0027492	FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206	3	7	7	131	3R	23392424	23392442	AAATTCTTAGGACTGCGGG		59	23392247	23392330	GAATCCGTTGATGATACTGC		58	NA	
Drosophila melanogaster	50	CG5402	FBgn0039521	FBtr0085213	3	1	1	63	3R	23328018	23328036	CACAACGACTAGAACAACG		58	23327973	23327991	TGTTTCCAAGACCGATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5471	FBgn0039440	FBtr0114538	1	1	1	211	3R	22455687	22455705	TTCTCCGTAGTTCTTTGCC		59	22455880	22455898	GATTGAGATCCTTCCAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scrib	FBgn0026178	FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085019	2	5	7	88	3R	22406736	22415639	CAACTACAGTCAACACCTG		57	22415691	22415709	TTAGGCACTTTAGTCGGAG		58	NA	
Drosophila melanogaster	50	CG11892	FBgn0039313	FBtr0089645,FBtr0089644	2	2	2	60	3R	21108218	21108236	TCTTCGACATTAGTCCTGG		58	21108258	21108278	TTATTGGTCCAAAGATCTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31510	FBgn0051510	FBtr0084783	2	1	1	60	3R	20944223	20944244	GAAAGTGTCTGTTGATGTAGAG		58	20944184	20944203	AAGGACATGAATCACATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tnc	FBgn0039257	FBtr0084754	2	1	1	247	3R	20841625	20841736	TTTATCTGCCTCCTGTGTC		58	20841947	20841965	GATACATTTGCAGGACACG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Rpb10	FBgn0039218	FBtr0084688	2	1	1	60	3R	20543533	20543553	TTTGGGTCTAAAGAGGTACTG		59	20543575	20543593	TTCGATAAGATCCACGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625	1	8	17	81	3R	20521108	20521126	GACGCTGATCAAGAAATGC		59	20521842	20528756	ACGAGTGATATCACCTAAGTC		58	NA	
Drosophila melanogaster	50	Dms	FBgn0011581	FBtr0084607	1	1	1	84	3R	20168705	20168723	AGAACTCCGATCAACTGAC		59	20168834	20168852	AACAGGTCATCAGAGTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	3	5	6	83	3R	20045868	20045949	CTAGAGATTACTGGCTGCG		59	20045803	20045821	GTTGTCGTTCAGGTAGAGG		59	NA	
Drosophila melanogaster	50	CG13604	FBgn0039137	FBtr0084509	3	1	4	113	3R	19817577	19817769	ATCATTAGCGATACCTATGAGC		59	19816967	19817503	GAGTGAGATGGATCGACTG		59	NA	
Drosophila melanogaster	50	cenB1A	FBgn0039056	FBtr0084368,FBtr0084369	1	2	2	83	3R	18949098	18949171	CATTGTAACGCTACTCCGA		59	18949218	18949236	TTGTACGTCTCATCTTCGC		59	NA	
Drosophila melanogaster	50	CG34375	FBgn0085404	FBtr0112607	2	1	1	60	3R	18832347	18832365	ATGCCTGCAACATATTTCC		58	18828724	18832323	TGGTTTGATGACCTCAAGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG17244	FBgn0039031	FBtr0084340	2	1	1	131	3R	18803188	18803206	CAATATTCCCGAAATCCCG		58	18803301	18803319	CTGGTCTGGTTATTGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17843	FBgn0038919	FBtr0084150	1	1	1	60	3R	17740577	17740596	GAAAGCTATTGCTGACTGAC		58	17740619	17740637	GCTCCCTTTATACTCTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Caki	FBgn0013759	FBtr0112872,FBtr0112873,FBtr0084162	1	3	5	80	3R	17617275	17617294	AAGATAGTTCCTTCGTACCG		58	17615474	17616440	CACGAATATAAGCACCGGA		59	NA	
Drosophila melanogaster	50	CG31198	FBgn0051198	FBtr0084128	1	1	1	81	3R	17581769	17581787	CATCCGTATGATCAAGCAC		58	17581829	17581909	CTGATACTCGTATTTCTTCAGG		58	NA	
Drosophila melanogaster	50	E2f	FBgn0011766	FBtr0084118,FBtr0084119,FBtr0084117	1	3	3	201	3R	17449734	17449752	AGATCAACGTCTTCCTCTG		58	17449364	17449569	GGCGTTTGAAATAATCCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	dmrt93B	FBgn0038851	FBtr0084007	3	1	1	81	3R	16901986	16902004	ATGTTGACCACTATGCCAC		59	16902047	16902332	ATTTGCTCTGGTACTGATCTG		59	NA	
Drosophila melanogaster	50	TotX	FBgn0044810	FBtr0083985	3	1	1	62	3R	16731158	16731177	GTGTTCTTAGGCATAGTTCC		57	16731115	16731136	GTGTTCCTCATAACTTGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TotB	FBgn0038838	FBtr0083973	1	1	1	60	3R	16699994	16700014	GATATACGGGAGAAATCATGG		57	16700036	16700054	AAGATCCTTCTAGCACCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5077	FBgn0038786	FBtr0083878,FBtr0083880,FBtr0083881,FBtr0083879	1	4	4	192	3R	16148681	16148699	CCATCGAGACATTATCCCG		59	16148854	16148945	AAAGCAAGTTGCTTAATGGC		59	NA	
Drosophila melanogaster	50	ire-1	FBgn0038736	FBtr0113248	3	1	2	129	3R	15683401	15686382	GACAATAGCAGATGATCCTC		57	15683291	15683310	CGGTAACTTCTTAAGACTGC		58	NA	
Drosophila melanogaster	50	Vha13	FBgn0026753	FBtr0083804	2	1	1	193	3R	15469501	15469519	GAGGAGATCGAGAAGTTCC		58	15469267	15469285	ATGTTGTACACGTACTGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15025	FBgn0038709	FBtr0083768	2	1	1	60	3R	15316484	15316504	CCTCTAATAAGTCGTCGACTC		59	15316444	15316463	AGTAAACTGGCATCAACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11779	FBgn0038683	FBtr0083750,FBtr0100549,FBtr0083749,FBtr0100548	3	4	4	81	3R	14981620	14981638	CTCGTCATGAGCGATAGTG		59	14981490	14981508	AGAACTTGGAGTCCTTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14285	FBgn0038674	FBtr0083711	2	1	1	69	3R	14851516	14851534	GGTCAACAATCTTTCGCAG		59	14851624	14851644	TATGATCAACTCATGGCAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33541	FBgn0053541	FBtr0091507	1	1	1	62	3R	14322818	14322837	GCTGCGTTATGAATTATTGG		57	14322775	14322793	ACACAAATTTGGTAGCACG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5265	FBgn0038486	FBtr0083407	3	1	1	60	3R	12966697	12966717	GGATGTACTTGAAACATGTCC		58	12966738	12966757	ATACTTGCACTTAAGCTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31265	FBgn0051265	FBtr0083402	2	1	1	61	3R	12954018	12954037	AAATCCCTGTGAATCAAAGC		58	12954061	12954079	TTATCCTGCCAGATTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14909	FBgn0038458	FBtr0083366	2	1	1	65	3R	12801101	12801119	GATGCAGTTGAATCCACTG		58	12801148	12801166	TAGGTTATCATGCCGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083351,FBtr0083350,FBtr0083347,FBtr0083349	3	4	6	97	3R	12484785	12536291	CTGGCTAGGTACAAATGGT		58	12484706	12484727	GATAATGATTCGTGTGGAACTC		59	NA	
Drosophila melanogaster	50	mRpS33	FBgn0038426	FBtr0083316	2	1	1	60	3R	12262128	12262147	TGAACTACCTCTCAAATCGC		59	12262087	12262105	ATGGACTTCTCGTTTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mtSSB	FBgn0010438	FBtr0083277,FBtr0100152	3	2	2	103	3R	12030247	12030625	CCAACTACAAATATGAGAACGG		59	12030165	12030183	CTTCAAGTATTCCAGCACG		58	NA	
Drosophila melanogaster	50	CG6499	FBgn0038309	FBtr0113238	1	1	1	91	3R	11073838	11073911	ACCAGCTCCATCTATTCCT		59	11073765	11073783	GTAATGGACACTAGGGAGC		59	NA	
Drosophila melanogaster	50	Caf1	FBgn0015610	FBtr0083052	2	1	1	87	3R	11052240	11052368	ACCTCAATGGCTATTTGCT		59	11052419	11052437	ATAACCCTATGCTCCTTGG		58	NA	
Drosophila melanogaster	50	CG6687	FBgn0038299	FBtr0083140	1	1	1	131	3R	11032943	11032961	TCATATCCCGGCTAAATGC		59	11032768	11032849	CCATTAAGCTGAGGATAGGG		59	NA	
Drosophila melanogaster	50	CG3731	FBgn0038271	FBtr0083000,FBtr0083001	2	2	2	78	3R	10717534	10717552	ACACATGCTACAAGGACAC		59	10717594	10717686	TTGAAGAGCATATCCTCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3563	FBgn0038259	FBtr0082989,FBtr0113234,FBtr0082988	1	3	3	125	3R	10616865	10616883	GTTACAGTAGTGCCTCGAC		59	10616970	10619180	GATAAGTGGCTTGTATCTTGC		59	NA	
Drosophila melanogaster	50	CG34388	FBgn0085417	FBtr0112629	1	1	1	117	3R	10246524	10246542	AACTAAATCTTTCGGGCCA		59	10246623	10246710	TTCTCCTTGCTCATGTCTC		58	NA	
Drosophila melanogaster	50	twf	FBgn0038206	FBtr0082891	1	1	1	117	3R	9948582	9948701	TTCGATCGAGAATGAGCAG		59	9948782	9948800	AATATAGCAGGGCACATCC		59	NA	
Drosophila melanogaster	50	Dip-B	FBgn0000454	FBtr0082832,FBtr0082833,FBtr0082831	2	3	3	192	3R	9609801	9609886	GAGAAGGTTCTCAAGGCTG		59	9610099	9610117	CCCTTGGATCATCGATCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Dip-B	FBgn0000454	FBtr0082832,FBtr0082833,FBtr0082831	1	3	3	192	3R	9609801	9609886	GAGAAGGTTCTCAAGGCTG		59	9610099	9610117	CCCTTGGATCATCGATCTG		59	NA	
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	2	8	8	284	3R	9504400	9504475	AACACGACGTAAATCAGGA		58	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG10841	FBgn0038163	FBtr0082795	2	1	1	80	3R	9458460	9458539	GGACTACGAACTAATTGCAC		58	9458580	9458600	GGTATCTTCATAAAGTGCAGC		59	NA	
Drosophila melanogaster	50	CG12538	FBgn0038157	FBtr0082791	2	1	1	66	3R	9349193	9349211	AATTGAACAAGTGTCAGCG		58	9349145	9349163	TTTATTGGAGCACCATGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8863	FBgn0038145	FBtr0082751,FBtr0082753,FBtr0082752,FBtr0082755	1	4	5	60	3R	9210263	9210281	GAGGTTGACATTCCAATCG		58	9210395	9210413	GTTGCTTGGGATCAAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15888	FBgn0038131	FBtr0100257	1	1	1	60	3R	9112010	9112031	AATGAGAATCTACGAGTGTCTG		59	9111971	9111989	AACGTACAATTTCGTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp304a1	FBgn0038095	FBtr0082691	1	1	1	149	3R	8789869	8789889	CGAGATCCTCAATAATCAGGT		59	8790290	8790308	TCTCTTAAGTAGCGCAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14739	FBgn0037987	FBtr0082553	3	1	1	60	3R	7874272	7874290	CATCATGAAACACTCGGAG		58	7874230	7874248	GTACGTCTTCATGCAAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31116	FBgn0051116	FBtr0082528,FBtr0113390,FBtr0113391	1	3	5	120	3R	7628395	7631757	CTTATGTATGGTCGCTATACCA		59	7628048	7628314	CCAGCAGTTCCTTATTCCT		58	NA	
Drosophila melanogaster	50	CG31374	FBgn0051374	FBtr0082400,FBtr0082401,FBtr0082399	2	3	3	85	3R	7264081	7264158	AGAGTATCCTCAAGGAGGAG		59	7264015	7264033	TTCGTCTAGCTTCATGGAG		58	NA	
Drosophila melanogaster	50	CG6764	FBgn0037899	FBtr0082403	3	1	1	79	3R	7256636	7256654	AGAAGATCACCTACGTGGA		59	7256575	7256593	TAACATCTCGAGATCCTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190	1	8	8	80	3R	5954403	5954421	CTCCAGGGATTACTTGAGC		59	5954227	5954361	TATTCATGAACCGGATAGGTC		59	NA	
Drosophila melanogaster	50	CG16789	FBgn0037712	FBtr0082071	3	1	1	81	3R	5393270	5393345	GATCGATCTGTTTAACGATACC		58	5393385	5393405	GTAGATCATGTCCTCATAGGC		59	NA	
Drosophila melanogaster	50	CG31259	FBgn0051259	FBtr0081871	3	1	1	208	3R	4351094	4351112	AGGACTAAAGCCATTCCTG		58	4351357	4351375	CATTGTCGAAACCAAACGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	DppIII	FBgn0037580	FBtr0081840,FBtr0081841	3	2	2	179	3R	4171063	4171081	AGATTCCTGTTCTTAGGGC		58	4171280	4171301	CGGATGCCTTTACTATAGTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33722	FBgn0064126	FBtr0091719	2	1	2	130	3R	4069896	4069919	CATACAGATACGTATCCTTGTAGG		59	4070007	4070026	GTCTCCAGAATCTCCAACAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7910	FBgn0037547	FBtr0081790	1	1	1	85	3R	3914237	3914255	CTGTTGGAAATAATGGCGG		59	3914301	3914376	GCATAGTATACCTTCATGTCCT		59	NA	
Drosophila melanogaster	50	alphaTub84D	FBgn0003885	FBtr0081539,FBtr0081538	2	2	2	60	3R	3357678	3357697	AAATAGTGTCCTCGATCACC		59	3357720	3357738	GTGAGGTCCACATTTAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gfzf	FBgn0053546	FBtr0114531,FBtr0091512	2	2	2	124	3R	2972597	2972676	GTACTCGAAGATGAATCCG		57	2972491	2972509	GATATAGCGTTGAATCCGG		57	NA	
Drosophila melanogaster	50	dpr11	FBgn0053202	FBtr0081704	3	1	1	121	3R	2358447	2358465	TTCATCATGTGGTACCACG		59	2357760	2358362	ATTAATGAGCCAATCGTGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Osi4	FBgn0037412	FBtr0078615	1	1	1	69	3R	2045358	2045376	AGATCAAACGTGAGGACTC		59	2044286	2044304	ACGTAGTTGTAGATCAGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1208	FBgn0037386	FBtr0113197,FBtr0113196	3	2	2	122	3R	1662757	1662830	TTTAATTGGTATCGCAACGG		58	1662915	1662933	ATACCAATCGTAAGGAGCA		58	NA	
Drosophila melanogaster	50	CG1236	FBgn0037370	FBtr0078721	2	1	1	60	3R	1563271	1563291	GACTTAATCGTAGTCTGTTGC		58	1563312	1563331	CAGTGGCATTGAAGATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	plx	FBgn0004879	FBtr0078718	3	1	2	93	3R	1533896	1534232	GATGGATAACATACCCAAGCA		59	1534287	1534305	CACTAGGAACACCATCGTC		59	NA	
Drosophila melanogaster	50	exba	FBgn0037346	FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745	3	7	7	85	3R	1423978	1423999	GGTTCTATTATTCGTAAAGGGC		58	1423648	1423932	CAGAACCGTTGACTAACCA		59	NA	
Drosophila melanogaster	50	CRMP	FBgn0023023	FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686	1	4	4	85	3R	1400179	1400396	GAATTATCAAGTTTGTGGGTCC		59	1400442	1400460	AATGATCATCAGTCCGCTG		59	NA	
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199	1	14	15	114	3R	1100031	1100465	GAGCACAACGTATTTGGTG		59	1099935	1099953	AATGGAACACCTTGAAGCT		59	NA	
Drosophila melanogaster	50	CG2604	FBgn0037298	FBtr0078829,FBtr0078828,FBtr0078830	2	3	3	60	3R	1047615	1047635	TCTAAGACCGGACTAATTAGC		58	1047575	1047594	GAATCTCAAACTTGATGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tacc	FBgn0026620	FBtr0089955,FBtr0089953,FBtr0089952,FBtr0089954	2	4	7	83	3R	570241	570259	AAAGTTTGGAGGTCTTCCC		59	569895	570197	TTCAGTTGAGTATCCATATCGG		59	NA	
Drosophila melanogaster	50	pncr011:3L	FBgn0083068	FBtr0091958	3	1	1	63	3L	11089808	11089826	TGCTAATTAGCGGAAGACG		59	11089853	11089871	AATGGAAGTTGGATTGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pncr008:3L	FBgn0047000	FBtr0091957	1	1	1	60	3L	6213682	6213700	TTGGTTCTAAGTCTCGTCG		59	6213724	6213742	GCGATAAAGTCGAGAACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slif	FBgn0037203	FBtr0078555,FBtr0078556,FBtr0078557	1	3	3	82	3L	22885585	22885671	AATCTTTGCGTCCATAATGG		58	22885716	22885734	TGTATGCTAACAGGGTTCC		58	NA	
Drosophila melanogaster	50	CG32454	FBgn0052454	FBtr0078529	3	1	1	60	3L	22724211	22724229	CTCCTTGACTATCCCTTCG		58	22724253	22724271	GAATAGAGATTGACAGCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33770	FBgn0053770	FBtr0091771	1	1	1	60	3L	22642228	22642246	CTACTACTTGAGGGACTGG		58	22642270	22642288	TCCACTGGTTATGAAAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11248	FBgn0037117	FBtr0078430,FBtr0078431	3	2	2	146	3L	21675715	21675789	TACAAGAAGCTCGTTCAGC		59	21675898	21675917	CTTCATATCAGACTGGCAGG		59	NA	
Drosophila melanogaster	50	CG7166	FBgn0037107	FBtr0078465	3	1	1	84	3L	21615745	21615842	GGAGATGTAAACTCAGAAATGC		59	21615682	21615704	CATCTCGTGGATACATAGATCTC		59	NA	
Drosophila melanogaster	50	CG33289	FBgn0053289	FBtr0078367	3	1	1	85	3L	21528239	21528447	GATGTTTCCGAGAAATCGC		59	21528495	21528514	GATATTGGATCCCAGTCCAC		59	NA	
Drosophila melanogaster	50	Pros54	FBgn0015283	FBtr0078368	1	1	1	110	3L	21530466	21530544	GATGACTCTGTCCAACACC		59	21530618	21530636	GTCAGGAGGTTTATCTCGC		59	NA	
Drosophila melanogaster	50	CG7611	FBgn0037094	FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362	3	8	8	110	3L	21518808	21519093	GACCTTAAGGACCTAGAGC		58	21519167	21519185	ATTGCCATCATCCAAATGC		59	NA	
Drosophila melanogaster	50	CG7632	FBgn0037071	FBtr0078339	2	1	1	60	3L	21298921	21298940	AGGAGTACTTCGATGAAGTG		58	21298963	21298981	TCGTGGTATTCGAACAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11399	FBgn0037021	FBtr0078277	1	1	1	95	3L	20775753	20775771	AGTAAACCCTCCTCATTGC		59	20775611	20775695	ACAATAAAGCTCAGAGGCTC		59	NA	
Drosophila melanogaster	50	CG6480	FBgn0036964	FBtr0074847	1	1	1	107	3L	20289634	20289716	TGGACAATGGTCTCTTCAC		59	20289545	20289563	TAAACGCTACCTTTCGGTC		59	NA	
Drosophila melanogaster	50	trc	FBgn0003744	FBtr0074922	2	1	1	151	3L	19825365	19825383	CTCAATCGACGATACGTCC		59	19825175	19825193	TTCACTCCAAATTTCGCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	cyc	FBgn0023094	FBtr0074924	3	1	1	110	3L	19808536	19808554	AGAAGTCAGCTAGAACCTC		57	19808285	19808303	GAATCATGGAGGAGAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	LCBP1	FBgn0036901	FBtr0074955	2	1	4	60	3L	19685850	19685868	AACTTTGCGATTGGAAGTC		58	19685469	19685828	TTGGTACATTTACTCTCGAGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14098	FBgn0036884	FBtr0074936	2	1	2	76	3L	19539057	19539245	TTGTACAGGTTCATCTGTGTC		59	19539282	19539301	ATGATTATTTGTCCCGTGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Rad9	FBgn0025807	FBtr0075080,FBtr0112917	2	2	2	90	3L	18864946	18865073	GATGCCGAATATAATCCGTG		58	18864875	18864893	TGCCTCCAAAGTAAGTTCC		59	NA	
Drosophila melanogaster	50	CG14073	FBgn0036814	FBtr0075084,FBtr0075085	1	2	2	80	3L	18796091	18796174	TTGCTTAACAAGCTCTGTC		57	18796029	18796047	ATCTATCTTGAACTCCCGT		57	NA	
Drosophila melanogaster	50	CG7330	FBgn0036780	FBtr0075127	3	1	1	153	3L	18143848	18143866	CAGATACTGGGTGAGTTCG		59	18143983	18146297	CTTTGTAGTTCCGCAACAC		59	NA	
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	2	8	8	121	3L	16956903	16956980	GATTCACAAGGGTCTATTGC		58	16957064	16957082	CATGGATTCCCTCCTTCAG		59	NA	
Drosophila melanogaster	50	CG4753	FBgn0036622	FBtr0075422,FBtr0075421	2	2	2	88	3L	16372429	16372447	TTCTGCACTACTTGGTCAC		59	16372299	16372378	GAGGCTATAGAATCCTCCCA		59	NA	
Drosophila melanogaster	50	th	FBgn0003691	FBtr0075499,FBtr0075501,FBtr0075500	1	3	3	60	3L	16033061	16033079	GTTGTAGCTGATCTTCCGT		59	16033019	16033037	TCGTGTTGTTATCCACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6151	FBgn0036533	FBtr0075543,FBtr0075541,FBtr0075542	2	3	3	63	3L	15809068	15809087	CCGTGGTATCTCAAATATGG		57	15806715	15809042	AAAGAATGGCAAAGAAGGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13457	FBgn0036482	FBtr0075654,FBtr0075653	3	2	2	78	3L	15121464	15121483	GATTATACGGGACCTAGCTC		58	15121300	15121318	CATCATCGTAGGTGGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13737	FBgn0036382	FBtr0075754,FBtr0075755	2	2	2	63	3L	13875756	13875774	TGGAGACCTATTTGACGGA		59	13875801	13875819	CTGTTGGGCTCAAATTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10713	FBgn0036360	FBtr0075855	3	1	1	181	3L	13422918	13422936	GTTCTACTTCGACCACCAG		59	13422755	13422773	CTAACGAGGAGTTGACACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10749	FBgn0036328	FBtr0075871	1	1	1	60	3L	12966061	12966080	CCCATCAACGTGATAGTACC		59	12966102	12966121	GATCGTATGTACCCTTTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nrx-IV	FBgn0013997	FBtr0075999,FBtr0075998	2	2	2	82	3L	12146775	12146793	GCGTGTGAACTTGAATCTC		59	12146839	12147059	GTCCATCCGAGTAGAACTC		58	NA	
Drosophila melanogaster	50	RpL10Ab	FBgn0036213	FBtr0076034	1	1	3	93	3L	11816587	11816605	ATTTGAGTAGGTCTCCAGC		58	11816662	11816772	GGAATGTGCTTCAACAAGG		59	NA	InUTR
Drosophila melanogaster	50	CG6024	FBgn0036202	FBtr0113164,FBtr0113165,FBtr0113166	1	3	3	89	3L	11752782	11752800	TAATCCTCATCGGACTCCT		59	11737115	11752729	GCGACTGCATGTAATAGTG		58	NA	
Drosophila melanogaster	50	scyl	FBgn0041094	FBtr0076169,FBtr0076168	1	2	2	60	3L	11247413	11247432	GCAGTTCATGAAGAGTTTGG		59	11247454	11247473	CTTGGTGATCGTATACTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	As	FBgn0061469	FBtr0076186	1	1	1	93	3L	11200361	11200379	CTTCGAAATGGTTACGGAC		58	11200224	11200304	AAAGTCGAATTCACGACTG		58	NA	
Drosophila melanogaster	50	CG32082	FBgn0052082	FBtr0076216,FBtr0113423,FBtr0113422	3	3	3	109	3L	11152568	11152586	AGTGGATACAGTACCAGCA		59	11152659	11152872	TCCTTAATTCGTTCCAGGC		59	NA	
Drosophila melanogaster	50	Elo68alpha	FBgn0052072	FBtr0076232	3	1	1	124	3L	11095818	11095836	CCATGGTGTTCCTAAATGG		58	11095629	11095730	CTTTGTAAGACGCATTTCG		57	NA	
Drosophila melanogaster	50	CG12362	FBgn0036082	FBtr0076282,FBtr0076281	1	2	2	60	3L	10407208	10407227	AAATATCGCTCTTCAATGGC		58	10407250	10407268	GCATGTGGTTGCTATAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf2	FBgn0011836	FBtr0076361	3	1	1	85	3L	9878987	9879005	CTTAACACCTGTGGTCTCC		59	9878860	9878938	CATCTAGCACAAGTTTCGC		59	NA	
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326	3	11	11	89	3L	9773789	9773875	CCTCATGAGATCTTTGTGC		58	9773928	9773946	CTCATACTTGATCCAACGG		57	NA	
Drosophila melanogaster	50	vsg	FBgn0045823	FBtr0076398,FBtr0076400,FBtr0076399,FBtr0076401	1	4	4	72	3L	9709210	9709228	ATGGATCCTCGTTCATTGG		59	9709264	9709282	AACTTGTAGGCCACTAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8336	FBgn0036020	FBtr0076384,FBtr0076386,FBtr0076385	2	3	3	123	3L	9624228	9624300	ACAAGTTCACAGGAGATGG		59	9624387	9624405	TAGTATCGATTCGCCTTGC		59	NA	
Drosophila melanogaster	50	Klp67A	FBgn0004379	FBtr0076499	3	1	1	219	3L	9356319	9356484	AGATCAAGAAGGCTCTACTC		58	9356059	9356077	TTGAATTTGACCAAAGGCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Doc3	FBgn0035954	FBtr0076521	1	1	1	80	3L	8999125	8999262	CTGGATAACAATGGTCATATCG		58	8999301	8999321	GAGATCAGAGGTTCGTATGAC		59	NA	
Drosophila melanogaster	50	Idh	FBgn0001248	FBtr0076671,FBtr0114548,FBtr0114547,FBtr0076668,FBtr0076673,FBtr0076669,FBtr0114549,FBtr0076667,FBtr0076670	1	9	9	60	3L	8350349	8350367	TCTGAAGAAGTACGATGGA		57	8350307	8350325	GTACTGCTTGTTGTACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7197	FBgn0035866	FBtr0076715	2	1	1	61	3L	8292008	8292027	GTCTATGCCAATAAGCAGGA		59	8291966	8291984	AGTTGTCGTGAGATTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mus301	FBgn0002899	FBtr0076689	3	1	1	102	3L	8134576	8134666	TTAAGATCAATCGTGCCAG		57	8134732	8134750	ATGTGCTCTAAGGATTGGA		57	NA	
Drosophila melanogaster	50	CG8111	FBgn0035825	FBtr0076770	1	1	1	294	3L	7907430	7907448	TGATGTGTTCAATCCGGAG		59	7907093	7907172	TACAAACAGCAGACGAAGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	SMSr	FBgn0052380	FBtr0076870,FBtr0076871	1	2	2	108	3L	7368206	7368288	AATAACAGGGCTCTCATGC		59	7368116	7368135	TATCGTATTCATTGGGCACC		59	NA	
Drosophila melanogaster	50	CG10107	FBgn0035713	FBtr0076952,FBtr0076950	3	2	3	117	3L	6740078	6740966	GTACAAAGATTTCTCCCGTG		58	6739980	6739998	AATCTCGAATCTGTAGGGC		58	NA	
Drosophila melanogaster	50	CG8368	FBgn0035707	FBtr0076976,FBtr0076977	2	2	2	60	3L	6600058	6600078	CTACCACTATCTGTCTAACGA		58	6600100	6600118	CTTCGTGCTGAATATCCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)mbn	FBgn0002440	FBtr0100355	1	1	2	114	3L	6118570	6118588	GGACGTTATGAGACAAGCT		59	6118410	6118492	TCGGATGTTGTGTTGACTC		59	NA	
Drosophila melanogaster	50	Bj1	FBgn0002638	FBtr0077075	1	1	3	112	3L	5925537	5925555	CTAGACAACGTGGAACTCC		59	5925355	5925373	ATTAGTCAGGGCCTTTCTG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Pmi	FBgn0044419	FBtr0091713,FBtr0091712	1	2	2	120	3L	5773860	5773941	TGTTGTCAATATCAGGTGGA		58	5774024	5774042	TACGGTGCAAGTATTTGGT		59	NA	Nonspecific
Drosophila melanogaster	50	shep	FBgn0052423	FBtr0077172,FBtr0077175,FBtr0077173,FBtr0077174	3	4	4	80	3L	5156244	5156459	CAGGTAGATGATCAGACTTCG		59	5156184	5156204	TTTGTATGAGGTTACTCCCAG		59	NA	
Drosophila melanogaster	50	CG11357	FBgn0035558	FBtr0073310,FBtr0113143,FBtr0113142	3	3	3	196	3L	4551753	4551771	AGTGGTTCAACGAGAAGTG		59	4551929	4552113	CCATTTGGAACGATATGAACG		59	NA	
Drosophila melanogaster	50	CG18675	FBgn0040696	FBtr0073218	1	1	1	263	3L	4174526	4174544	AATACCGAGGATCTGACTG		58	4174832	4192200	CTCAAGTTTCTTGAGTTCCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	Gr64d	FBgn0035486	FBtr0073198	3	1	2	96	3L	4032380	4032469	ATACCATGGGCTCTTTGAG		59	4032529	4032547	GTTTCCCGGATGATATGGG		59	NA	Nonspecific
Drosophila melanogaster	50	Acp63F	FBgn0015585	FBtr0073182	2	1	1	92	3L	3816160	3816179	CCCGATTGTAACTTAGATGG		57	3816033	3816105	TAGTTCGATGAATCCTGGT		57	NA	
Drosophila melanogaster	50	CG14973	FBgn0035451	FBtr0073130	1	1	1	220	3L	3506997	3507015	TAAGCTGGAAGATGTCTGC		59	3507199	3507307	GATTCTCCGCCTTAATCGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	rasp	FBgn0024194	FBtr0073029	3	1	1	60	3L	3162534	3162554	TCTTAGTGTAAACCTGGACTG		59	3162576	3162594	GTAGCTGGCTATCAATGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1271	FBgn0035392	FBtr0072989,FBtr0072986,FBtr0072988,FBtr0072987	2	4	4	63	3L	3054212	3054230	AACGATGTGTTCTTCATGC		58	3054323	3054341	CTGACCGATAATCGTTCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG2113	FBgn0035384	FBtr0072979	3	1	1	60	3L	2995684	2995703	ATGGGTTCGTAGACTTTAGC		59	2995726	2995744	ACGGGTTCTGTATCATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1139	FBgn0035300	FBtr0072845	2	1	1	157	3L	1972191	1972274	TCCCACTACAAACTTTCAGAC		59	1972393	1972411	AAATGTGCAGGCAGTAGAG		59	NA	
Drosophila melanogaster	50	CG12004	FBgn0035236	FBtr0072746,FBtr0113122,FBtr0072745	3	3	3	143	3L	1573249	1573267	TTCATCTGCATCGAAATGC		58	1573608	1573688	CATTGTTTCCTTAAGACTGCTG		59	NA	
Drosophila melanogaster	50	CG9133	FBgn0035198	FBtr0100645,FBtr0100646	2	2	3	179	3L	1254314	1254405	CATGAACGAGAATGTGGAC		58	1254548	1254566	TTCTTGAGTACGCGTATGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG9130	FBgn0035197	FBtr0072655,FBtr0072657	3	2	2	117	3L	1253652	1253670	AAATTCGGTACAAGGAGCC		59	1254103	1254121	TACTTCACCAGTAAGTGGC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	LysS	FBgn0004430	FBtr0072631	1	1	1	101	3L	1227995	1228013	TCAACGATCTGTACTGGTG		59	1228078	1228096	GGACAGAGTTGGTGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17129	FBgn0035151	FBtr0072612,FBtr0072614	3	2	3	142	3L	679821	679908	CAAGAATTTAGCGACCTGG		58	679697	679715	TCTCTTCACCTTTCACCTC		58	NA	InUTR
Drosophila melanogaster	50	Reg-2	FBgn0016715	FBtr0072561	2	1	1	144	3L	606251	606269	GATTATCCCAACTTTGGGC		58	605660	605678	GCTCAATTAGGTGGTTGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	E(bx)	FBgn0000541	FBtr0072522,FBtr0072521	1	2	3	87	3L	234500	234582	TTAAAGAGCCAATGGATCTC		57	234432	234453	GTCATATCGCCTATAAACTCAG		58	NA	
Drosophila melanogaster	50	Lsp1gamma	FBgn0002564	FBtr0072463	1	1	1	60	3L	67406	67425	ACGATGAAACTAAGATGACC		57	67447	67466	TAGTACCAGTAAGCATTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6a15Psi	FBgn0033303	FBtr0088689	2	1	1	60	2R	4457396	4457417	TGAGAAGGGAACTTCATTACTG		59	4457436	4457456	ATATAAGTGCGGATCGTAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	emp	FBgn0010435	FBtr0072400,FBtr0072402,FBtr0072401	1	3	3	88	2R	20865282	20865300	GACAACATGTGCTTCTGTC		59	20865154	20865230	ATGGGAGAGTCGTATTGAC		58	NA	
Drosophila melanogaster	50	Mmp1	FBgn0035049	FBtr0072330,FBtr0072329	3	2	2	213	2R	20563637	20563726	GAGATCAAGTTCGTGGAGAG		59	20563443	20563461	TCTGATCTGAGTGGGAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13569	FBgn0034979	FBtr0072283,FBtr0072284	2	2	2	99	2R	20012300	20012318	ACTTCACCATCATCGTCAG		59	20012161	20012237	AAGTGGCAGAAGTTAGAGC		59	NA	
Drosophila melanogaster	50	eIF-5A	FBgn0034967	FBtr0072172,FBtr0072173	1	2	2	64	2R	19946638	19946656	TAGTGGCAAGGACTTACTG		58	19946746	19946764	TAATTGCGATAACGCACTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	3	8	8	81	2R	19817553	19817571	GGATATCATGGAGAAGCCC		59	19817426	19817508	TCCAATAGCCATGTAACGG		59	NA	
Drosophila melanogaster	50	CG13562	FBgn0034928	FBtr0072135	2	1	1	139	2R	19791999	19792017	ATCCTAACACTGTTCAGGC		59	19792120	19792195	ATATCGCACGTGTCTATGC		59	NA	
Drosophila melanogaster	50	CG5554	FBgn0034914	FBtr0072126	1	1	1	126	2R	19733346	19733364	CTACTTCGTGAAGAAGCAG		57	19733454	19733659	GTTGAAGTCCTTCAGAGTG		57	NA	
Drosophila melanogaster	50	l(2)dtl	FBgn0013548	FBtr0072085	1	1	1	60	2R	19591330	19591348	ATTGCTACAATCTGGCCTC		59	19591372	19591390	TTAAGGAGTCCCTTGTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alphaPS5	FBgn0034880	FBtr0072063	2	1	1	82	2R	19447452	19447473	CATTTGGTACATCATTCTGTCC		59	19447516	19447586	AGAACCGAAGCTTGTAGAG		59	NA	
Drosophila melanogaster	50	CG3906	FBgn0034871	FBtr0072121	2	1	1	68	2R	19399432	19399450	ATGCGGTACTACAACACAG		59	19399382	19399400	CTTGTAGGCATCCGTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13544	FBgn0034826	FBtr0071973	1	1	1	126	2R	19027279	19027351	GAACTCAAACTGCATGTCG		59	19027171	19027191	GAAAGTTTCCGTATCCTTTCC		58	NA	
Drosophila melanogaster	50	RpL23	FBgn0010078	FBtr0071897	2	1	1	149	2R	18742009	18742028	ATCTTGGAATAACCAGTCCG		59	18742257	18742275	ATCACGTACAGGTTCTTGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	blw	FBgn0011211	FBtr0071883	3	1	1	105	2R	18687968	18688079	GATCGTCAGACTGGTAAGAC		59	18688147	18688165	CGACGTAGATGCAGTACAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11362	FBgn0034737	FBtr0071836	1	1	1	60	2R	18450150	18450169	CATTACAAATGTGGACAGGG		58	18450190	18450210	GAAGTACTGAGTAATCTTCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GlcT-1	FBgn0067102	FBtr0071755	2	1	1	60	2R	17964228	17964249	AGATCAATAACATCCATCCAGG		59	17964268	17964288	TCTGAGATCATCACAAAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30284	FBgn0050284	FBtr0071684,FBtr0071685	2	2	2	60	2R	17538445	17538463	GGTCAAGACCTTTATCGAG		57	17538403	17538422	TAGAGATTGACAGAACTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9437	FBgn0034599	FBtr0071575	3	1	1	60	2R	17057113	17057132	CACAATTCATCCGGAAATCG		59	17057155	17057173	AGACTCAATAGGCTCAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34396	FBgn0085425	FBtr0112644	3	1	2	126	2R	16981403	16987725	TTTACACGACCATAGGTTACG		59	16987813	16987831	AATAACTTGCCCAGATCGG		59	NA	
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0086456,FBtr0086451,FBtr0100392,FBtr0086457,FBtr0086454	3	14	15	97	2R	15359155	15359173	ACAAGTGGATGAACATGGG		59	15359234	15360334	GACTAGAGCTTCTATCCGC		59	NA	
Drosophila melanogaster	50	RpL11	FBgn0013325	FBtr0086533	3	1	1	80	2R	15330539	15330557	CATCAAGTACGATCCCTCC		59	15330601	15330833	TGGTTCACATTGTAGCCAG		59	NA	Nonspecific
Drosophila melanogaster	50	endoB	FBgn0034433	FBtr0113097,FBtr0113098	3	2	4	83	2R	15196011	15196540	GTCTCCACAGTGATCTTCG		59	15195946	15195964	CAGACCCTTCAATAGACCC		59	NA	
Drosophila melanogaster	50	CG15087	FBgn0034380	FBtr0086647	2	1	1	81	2R	14596613	14596683	CACATACTGATTGCTCTGG		57	14596550	14596568	ATATCTCAGTTTCGTGGGT		57	NA	
Drosophila melanogaster	50	sec6	FBgn0034367	FBtr0086709	2	1	1	60	2R	14514314	14514332	AACGTAATCGAGCTGAAGG		59	14514353	14514374	GAGTGAAGTATTTGATCTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dgp-1	FBgn0027836	FBtr0086774,FBtr0086773	1	2	2	187	2R	14058156	14058237	CTTTATGGAAATAAGGGTTGCC		59	14057990	14058008	CATCAAAGCCGAGAATGTC		58	NA	
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	2	8	8	98	2R	14032393	14032483	CAAGGAAAGAATTCTGAGAAGC		59	14032542	14032560	AATCATCGGATACAGACGC		59	NA	
Drosophila melanogaster	50	rdgBbeta	FBgn0027872	FBtr0086888	2	1	1	81	2R	13584372	13585343	CTAACAGAATACACGTGTTCC		58	13584311	13584329	CTGTGCTGCCATTATTGTC		59	NA	
Drosophila melanogaster	50	CG14478	FBgn0028953	FBtr0086921,FBtr0086922	1	2	2	60	2R	13351432	13351452	GCAGGATCATAATTGGATGTC		58	13351474	13351492	TTCGGCATTGAGAAGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12699	FBgn0046294	FBtr0086995	2	1	1	91	2R	13134399	13134417	CAGAATCAGATGCAGAGGA		58	13134326	13134344	TATATCCACACGGTTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS15	FBgn0034138	FBtr0087124,FBtr0087123	2	2	2	100	2R	12458179	12458197	CATGATCATCGTACCCGAG		59	12457856	12457874	GGTAGTGACCGATCATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Rho1	FBgn0014020	FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216	1	7	7	81	2R	11992618	11992639	CATACTGATGTGTTTCTCAGTG		59	11992681	11993233	AAAGTGTTTGACCTCTGGG		59	NA	
Drosophila melanogaster	50	CG8192	FBgn0034030	FBtr0087354	2	1	1	145	2R	11433072	11433090	TAAAGATCCAGGGACAGCT		59	11432881	11432963	GTCGGCATAGTATCCAGAG		59	NA	
Drosophila melanogaster	50	mus210	FBgn0004698	FBtr0087373,FBtr0087374	2	2	3	111	2R	11200223	11200241	AAGTCAACGCGAATAAAGC		59	11200316	11202134	ATAGATCTGCATCTGCCAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12424	FBgn0033987	FBtr0087409,FBtr0087410,FBtr0087411	3	3	3	101	2R	10865415	10865739	TGGTGCTCATTAAGGTTCG		59	10865804	10865822	TGTAATGGCTGAAGGTCAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12424	FBgn0033987	FBtr0087409,FBtr0087410,FBtr0087411	2	3	3	101	2R	10865415	10865739	TGGTGCTCATTAAGGTTCG		59	10865804	10865822	TGTAATGGCTGAAGGTCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Dro	FBgn0010388	FBtr0087436	1	1	1	232	2R	10633493	10633511	CAATGAAGTTCACCATCGT		58	10633707	10633725	TTGATCGGATGACTTCTCC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12860	FBgn0033954	FBtr0087480	1	1	1	66	2R	10553762	10553780	CATACCCTACAAGCCAGAG		59	10553714	10553732	CTTGTCATCCAAACGTACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arc2	FBgn0033928	FBtr0087547	3	1	1	64	2R	10249877	10249898	TTCCTACCAGATATACATGGAG		58	10249923	10249941	ATGAGTCGATCACTTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33156	FBgn0053156	FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681	2	5	5	83	2R	9436514	9436533	ATTATGGTGACTCCCATCTG		58	9436391	9436470	TACTGATATCTTCAGCTCCAC		58	NA	
Drosophila melanogaster	50	EfTuM	FBgn0024556	FBtr0087670	2	1	1	63	2R	9396194	9396212	TTCGTGGGCTATAACAAGG		59	9396239	9396257	GAATCTGGTGGAACATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mars	FBgn0033845	FBtr0087668	2	1	1	60	2R	9391977	9391995	CTTTACGCGTTACTCAGTG		58	9392019	9392037	CTGAGGATCCAAGATGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(z)2	FBgn0008654	FBtr0087793	2	1	1	82	2R	8887544	8887657	CGGAACTTATAAGCTTATCCCT		59	8887700	8887718	GTAAATAGTGGGAGGCACC		59	NA	
Drosophila melanogaster	50	CG30487	FBgn0050487	FBtr0087802	1	1	1	60	2R	8825248	8825268	GTTAATTTCGAAGAGCTGTCC		59	8825208	8825229	GAAGATTCTTGGGTATGTTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30486	FBgn0050486	FBtr0087817	3	1	1	164	2R	8735945	8735964	ATGGATGATGTTAAGGGCTG		59	8735749	8735767	GTACTGATAGAGTCCGCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33627	FBgn0053627	FBtr0091604	2	1	1	179	2R	8298799	8298817	TAAGTTGTTCATGCCTCGT		59	8298960	8299026	TAAACGTAAAGGCCCTTGG		59	NA	
Drosophila melanogaster	50	RpS11	FBgn0033699	FBtr0088005,FBtr0088007,FBtr0088006	3	3	3	127	2R	8087085	8087348	CTGTGTTCAGAGATGTTGAG		58	8086977	8086996	CTTCTTGAAGCTCTTCTTGG		58	NA	
Drosophila melanogaster	50	CG13176	FBgn0033692	FBtr0087989	2	1	1	60	2R	8069064	8069082	CAGTTCGGTGATTTACCAG		58	8069104	8069124	GCACTATTATATCCTGCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8290	FBgn0026573	FBtr0088042	2	1	2	103	2R	7860537	7862870	TAGCTGCTGATAAACAAGC		57	7862937	7862955	CATGTCATCTTCGTTGTCC		58	NA	
Drosophila melanogaster	50	CG8979	FBgn0033669	FBtr0088053,FBtr0088051,FBtr0088052	2	3	3	131	2R	7855439	7855457	CTAGACCCTGTATTCACGG		58	7855269	7855344	ACTTGGAATGAAGGATCCG		59	NA	
Drosophila melanogaster	50	CG8986	FBgn0033658	FBtr0088062	2	1	1	90	2R	7750308	7750326	ATGTTCTGGTCAAGAAGCC		59	7750236	7750254	ATGAAGTAGACCTCTGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13193	FBgn0033650	FBtr0088029	2	1	1	135	2R	7656803	7656821	GTTCAAGTACGGGAATCTG		57	7656979	7656997	GTAATTTGTGTCGTGGAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13220	FBgn0033608	FBtr0088116	1	1	1	60	2R	7172086	7172104	CTACTACATACCGCTGCAC		59	7172128	7172146	GTTCATAACATTCACCGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr47Eb	FBgn0033598	FBtr0088112	2	1	1	101	2R	7142989	7143008	TATGTACAGCTACATCGACG		59	7143072	7143090	ATCTCCTTGGGAATGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30015	FBgn0050015	FBtr0088243,FBtr0113356,FBtr0113357,FBtr0088242	1	4	4	156	2R	6730705	6730725	GATATACTGCGATCACATCAC		58	6730477	6730588	GAATGGAAGTCTCCAATGTC		58	NA	
Drosophila melanogaster	50	CG12325	FBgn0033557	FBtr0088227	2	1	1	80	2R	6713098	6713181	TGGTGAAGAGATTGCTGTG		59	6713224	6713243	ATAGTAGTAACTTGGCCAGC		59	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	3	9	9	198	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349188	6349206	CTTAGTACAGTCCACAGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Hdc	FBgn0005619	FBtr0088333	2	1	1	106	2R	6131259	6131280	GATATTGTCAAGGATTGGATGG		58	6131346	6131680	TTCTCCTTGGTTTCCTTGAG		59	NA	
Drosophila melanogaster	50	dap	FBgn0010316	FBtr0088470,FBtr0088469	3	2	2	155	2R	5600928	5600946	TCAATTCCTCGCTAGAGTC		58	5601064	5602430	GCTCCTTCATGAATTCTGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Mmp2	FBgn0033438	FBtr0088500	1	1	2	139	2R	5545211	5545229	TGACATGAAAGAGTCACGA		58	5530973	5545110	GATACATACCCATCAAGAAGG		57	NA	
Drosophila melanogaster	50	CG1809	FBgn0033423	FBtr0088520	2	1	1	60	2R	5450898	5450987	CAATGGTTATCCTTATCGTGAC		58	5451007	5451026	ATTATCATCCGCCAGTTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	wun	FBgn0016078	FBtr0088553,FBtr0088552	3	2	2	182	2R	5291962	5296734	TTTAATCTTGCTCTGCGCT		59	5291417	5291816	TCCACGATGAATATCACGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2063	FBgn0033400	FBtr0088600	1	1	1	175	2R	5173218	5173236	CTATTACGAGTCCTTGGCG		59	5172997	5173015	TCTTAACAACGGTTGACGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	ltd	FBgn0002567	FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934	3	5	5	112	2R	5066195	5066214	AGATGGATGAGTATGTGAGG		58	5066041	5066123	GATGAGTATCTTATTCACGAGG		57	NA	
Drosophila melanogaster	50	ltd	FBgn0002567	FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934	1	5	5	108	2R	5066192	5066210	GGATGAGTATGTGAGGGAG		58	5066041	5066123	GATGAGTATCTTATTCACGAGG		57	NA	
Drosophila melanogaster	50	Su(var)2-10	FBgn0003612	FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578	1	9	9	80	2R	5005945	5006020	TCATAGATGGCTACTTCCAG		58	5006060	5006081	CATCCTGATGAAGTTGAATCTC		58	NA	
Drosophila melanogaster	50	CG30382	FBgn0050382	FBtr0088894	1	1	1	250	2R	3718957	3719037	CTCTACCAAGTGGAGTACG		58	3718437	3718455	TACTTGTAGCGGAAGTTGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Rpt1	FBgn0028687	FBtr0088947	2	1	1	60	2R	3541239	3541259	CGACATTGAGCTTCTAAAGAC		59	3541199	3541219	GATGCTCTTGATGGATTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111097	1	1	60	87	2R	3233833	3233851	GACATGCTGGGAACTACTC		59	3219876	3233782	CTGGGAGGTACATTGACAG		59	NA	
Drosophila melanogaster	50	CG12831	FBgn0033141	FBtr0089057	1	1	1	73	2R	2961010	2961028	CAATTACGCATCCATCAGG		58	2960955	2960974	AATTGGTGGATAACCTTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12836	FBgn0033140	FBtr0089037	1	1	1	177	2R	2956248	2956762	AAGATGTTCGCAGATAACC		57	2956903	2956921	GGTGTGAAAGAACTTCCAG		58	NA	
Drosophila melanogaster	50	CheB42b	FBgn0066293	FBtr0086192	3	1	1	101	2R	2831081	2831099	CGACAAGAACCAGTATTGG		58	2830838	2831016	TGTACCAGAACGGTATCAG		58	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086201,FBtr0086198	2	2	11	82	2R	2764774	2764792	TCAGCCATCATACACAAGG		59	2764016	2764728	AGGCTCATAAACATACCCG		59	NA	
Drosophila melanogaster	50	ZIP1	FBgn0033096	FBtr0086139	2	1	1	70	2R	2604233	2604251	GAGATCCTCATTGAGAGCC		59	2604181	2604199	AACATTAGAGCGAATCCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha16	FBgn0004145	FBtr0086150,FBtr0086153,FBtr0086151	3	3	4	81	2R	2519556	2519575	CTTCTTCGGAGTTATGGGAG		59	2515389	2515407	GGTACCAGACTTAGCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	bin3	FBgn0033073	FBtr0085993,FBtr0085992	2	2	2	81	2R	2126343	2126361	GGTAGGATTCAGTCACAGC		59	2126405	2126496	TGCATACAACTGTATGGGTC		59	NA	
Drosophila melanogaster	50	SCAP	FBgn0033052	FBtr0086027	3	1	1	99	2R	1914899	1914917	GTAAGACTAGCCCATCAGC		59	1914762	1914836	TGAGGCAATACACCTTGAG		59	NA	
Drosophila melanogaster	50	gus	FBgn0026238	FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753	2	6	6	62	2R	1005304	1008282	TTGGTGGATTAGATCCCGA		59	1005260	1005279	TTTGACGAATTGTTCTTCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	gus	FBgn0026238	FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753	3	6	6	101	2R	1005301	1008279	GTGGATTAGATCCCGAACC		59	1005218	1005236	GAAGCTGTTGAATGTGCTC		59	NA	Nonspecific
Drosophila melanogaster	50	snoRNA:Psi18S-525b	FBgn0083037	FBtr0113541	1	1	1	63	2L	20418734	20418752	AACTAGAAAGACGAACGGC		59	20418779	20418797	CACGAACACAAGTCATCTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41120	FBgn0069931	FBtr0111231	2	1	1	72	2L	22667742	22667760	TGTTAGGAATTGCTGGTGG		59	22667688	22667706	CGTAAGGCATTAATACCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His4:CG33889	FBgn0053889	FBtr0091893	1	1	1	60	2L	21484232	21484250	GAACGTAATTCGTGATGCC		59	21484190	21484208	GGCTGTAACTGTCTTCCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp39D	FBgn0032943	FBtr0081515	3	1	1	92	2L	21356673	21356795	GGGTATACAGGAGCTACGA		59	21356851	21356869	AGTTCTTGTGAAGCATGGT		59	NA	
Drosophila melanogaster	50	CG31988	FBgn0051988	FBtr0081490	1	1	1	131	2L	21201885	21201903	ATTACGAGGACCTCTTTGC		59	21201772	21201791	AGGTTATAGGATTCTCGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9320	FBgn0032882	FBtr0081409	3	1	1	85	2L	20753100	20753185	CTACTTTAAGGAATACGTGGAC		58	20753231	20753249	CCAGATTCAGCTCAAACAG		58	NA	
Drosophila melanogaster	50	CG17470	FBgn0032869	FBtr0081406	2	1	1	60	2L	20642844	20642862	GGTGACCAACATAGTGGAC		59	20642802	20642820	AGAAATCGGATTCTCTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33120	FBgn0053120	FBtr0081118	1	1	1	60	2L	18844261	18844282	CCTTTGCTGATGTTATCATTCC		59	18843472	18843491	GCACATAGTTGGATAGTTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10336	FBgn0032698	FBtr0081095,FBtr0081094	2	2	2	62	2L	18689946	18689965	GATAGTGGAGCCTAAGAAGC		59	18689990	18690008	AGTGTTTCCACAGTGAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31787	FBgn0051787	FBtr0081055	3	1	1	60	2L	18285300	18285320	CTTCGATAATACCATCAGCAC		58	18285260	18285279	AGCTACTTCAAGAGTAAACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31787	FBgn0051787	FBtr0081055	1	1	1	60	2L	18285141	18285159	GCAAGATCCATGTGAACCT		59	18285099	18285118	TCTATCGCTCGAATGAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4278	FBgn0014092	FBtr0080834	2	1	1	60	2L	16327492	16327510	GTGGGATAAGAAGAGTGGT		58	16327534	16327552	GCTGATGATATTCACTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34167	FBgn0085196	FBtr0112358	3	1	1	67	2L	16003433	16003452	TTTCTAGGATGAGTTGTGCT		58	16003385	16003403	CTTACAACCAGACCCACAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4793	FBgn0028514	FBtr0080794	1	1	2	84	2L	15926120	15926141	GATCATGTTATCAGGCTTAGTG		58	15926990	15927008	TTATGGGATTATGGAGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31821	FBgn0051821	FBtr0080809	1	1	1	60	2L	15901177	15901195	TCAAAGGCATACTTCAGGG		59	15901135	15901153	TTTATCCAGTACATCCCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)35Di	FBgn0001989	FBtr0080772	1	1	2	60	2L	15750553	15750574	CTACTACTTCAAGTACAACCAG		57	15750514	15750535	GTAATAGCCAACTTGAATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15266	FBgn0028860	FBtr0080708	3	1	1	63	2L	15256672	15256690	AACACAGAAGCTCACAGAC		59	15256768	15256786	CCTCAATTTGGGTGATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dyn-p25	FBgn0040228	FBtr0080693,FBtr0080694	3	2	2	102	2L	15006135	15006153	CAATTCAGCAAGGGAATCG		59	15006219	15006237	ACACATAGGATCCAATGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ance-2	FBgn0032535	FBtr0080554	1	1	1	89	2L	13910656	13910726	TTGGAGAACTCACTTTGGA		58	13910779	13910797	TAGAGCATAGTATCGCCAG		58	NA	
Drosophila melanogaster	50	CG31845	FBgn0051845	FBtr0080533	2	1	1	140	2L	13777621	13777639	TGCAAACTTTGCGAATCAC		59	13777743	13777761	CTGAACTCTGTCAGGTAGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9263	FBgn0032530	FBtr0080515	1	1	1	60	2L	13542197	13542215	ATTGGTACGGATGGATGTC		59	13541967	13541985	ATCTCAACATCGTCTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5204	FBgn0032473	FBtr0080433	3	1	1	83	2L	13162314	13162333	CACTGATCTCAGTTATTGCG		58	13162436	13162454	AAATCTTCGGGTTCCTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020	3	17	17	87	2L	12723993	12724013	AAGACCTATCAGATCAGACAG		58	12724062	12724215	ATTTGAGCACCTTAATGCC		58	NA	
Drosophila melanogaster	50	CG31759	FBgn0051759	FBtr0080349,FBtr0080348	2	2	2	60	2L	12208525	12208545	CTGCAGGTATTAGATACGGTC		59	12208567	12208585	TTAGGGATGAAATCCACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-thr	FBgn0027081	FBtr0080333,FBtr0080332,FBtr0080331	1	3	3	63	2L	12104541	12104694	ATACTCGCAAGGAACTCAG		59	12104721	12104739	TTCTCCCAGAAGACATTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG6712	FBgn0032408	FBtr0080364	2	1	1	64	2L	12095332	12095350	CCTGAAACTACGTTCCCTG		59	12095286	12095304	TTATCCAGGCATAGTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tom70	FBgn0032397	FBtr0080311,FBtr0080309,FBtr0080310	2	3	3	60	2L	12037588	12037606	CACCAAGGATATGAACGAG		57	12037546	12037565	GAACATCTCCAGGATACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16965	FBgn0032387	FBtr0080284	1	1	1	232	2L	11983091	11983164	AAGGGAGCTAGATTTCCCT		59	11983360	11983378	TTGGTGGAATCATCACAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6509	FBgn0032363	FBtr0080246,FBtr0080247	3	2	2	80	2L	11511223	11511241	CGGTGTATGATGAGGAACC		59	11510833	11511182	GAGTCACATACCTTAGAGTCTC		59	NA	
Drosophila melanogaster	50	CG4713	FBgn0032342	FBtr0080197	2	1	1	81	2L	11109226	11109244	GGAATCAGCTACAATGTGG		58	11109288	11109365	AAGATTCATCATTGAGCAGG		57	NA	
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486	1	9	10	160	2L	10831340	10831358	GTCACAGGATTATCGGTCG		59	10826070	10830602	TCGAGCAGGAAAGAATCTC		59	NA	
Drosophila melanogaster	50	CG6431	FBgn0032289	FBtr0080109	1	1	1	80	2L	10727686	10727706	GACTGTCTTCATAATACACGG		58	10727748	10727846	CGGGATAGGTAAGCATCTC		59	NA	
Drosophila melanogaster	50	CG17108	FBgn0032285	FBtr0080127	1	1	1	168	2L	10694030	10694048	ATAGTGCTGAGTGTTTGTG		57	10693880	10693898	CACCAGATCCATAACCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6113	FBgn0032264	FBtr0080093	3	1	1	129	2L	10530139	10530157	GATACATCCTCACCTTGCA		59	10530250	10530326	TAGAGCAGGTAACCAAGTC		58	NA	
Drosophila melanogaster	50	RluA-1	FBgn0051719	FBtr0080040,FBtr0080039,FBtr0080041	3	3	3	80	2L	10464363	10464384	TATATCCATGTTCAAGAGCACC		59	10464242	10464324	CTATGATGAACAACGGAAGTG		59	NA	
Drosophila melanogaster	50	CG31716	FBgn0051716	FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012	2	6	6	95	2L	10400665	10400738	GAAGCAGAGTAACAGATGC		58	10400797	10400815	TTAATATGGGTGCTTGCTG		57	NA	
Drosophila melanogaster	50	CYLD	FBgn0032210	FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069	3	5	5	81	2L	10296849	10296946	TTTCTAAAGCTAAGCTCGGG		59	10296787	10296808	CACTCGGTAATGTTAACTTCTC		58	NA	
Drosophila melanogaster	50	CG34048	FBgn0054048	FBtr0100103	3	1	1	155	2L	10126129	10126147	CAGAGTTATTCCGCATCCA		59	10125876	10126011	ACGTACTTTCTGTCTTTCCA		58	NA	
Drosophila melanogaster	50	CG34048	FBgn0054048	FBtr0100103	1	1	1	151	2L	10126125	10126143	GTTATTCCGCATCCAAAGG		58	10125876	10126011	ACGTACTTTCTGTCTTTCCA		58	NA	
Drosophila melanogaster	50	nAcRalpha-30D	FBgn0032151	FBtr0079913,FBtr0079914,FBtr0079915	1	3	6	80	2L	9807360	9807378	TGCTAATCTCATCGATGGC		59	9802426	9807316	GAATTGTAACTCCCAGCGT		59	NA	
Drosophila melanogaster	50	nAcRalpha-30D	FBgn0032151	FBtr0079916	3	1	6	84	2L	9798301	9806458	CTGTTCCTCTTATAGGCACC		59	9798236	9798254	TAGTTGAGCACCACTACTG		58	NA	
Drosophila melanogaster	50	Pka-C1	FBgn0000273	FBtr0079851,FBtr0079852	1	2	3	112	2L	9685193	9696199	TACATCAGCCATTTCCCTC		59	9685099	9685118	TTCAAATCGTCTTCCAAGTC		58	NA	InUTR
Drosophila melanogaster	50	CG33299	FBgn0053299	FBtr0079845	3	1	1	60	2L	9657070	9657088	GAAGATACCCTACACCGTC		58	9657112	9657130	GACGGGATAAGGTTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gcm2	FBgn0019809	FBtr0079838,FBtr0079837	3	2	2	85	2L	9611426	9611446	GATTAGCAAGGTTCTTAAGCG		59	9611493	9611570	TGCCACAGGCATTATACTG		59	NA	
Drosophila melanogaster	50	Ggamma30A	FBgn0028433	FBtr0079796,FBtr0079797,FBtr0079795	3	3	3	163	2L	9272595	9291061	AATCCATAGCAGAAATGCG		58	9291185	9291206	CTGGTTATCATAATTATGGCGG		59	NA	InUTR
Drosophila melanogaster	50	CG7781	FBgn0032021	FBtr0079609	1	1	1	60	2L	8322790	8322808	GATTACGCAGATCATCGAG		57	8322677	8322695	CCTAATCACACGGCTATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7787	FBgn0032020	FBtr0079601	1	1	1	148	2L	8320480	8320498	TTGCAACTGTTTGATGCTG		59	8320680	8320698	TCATCATGTCCTTGACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7870	FBgn0032012	FBtr0079614	1	1	1	109	2L	8302545	8302563	CTCAGTGTCATCGTACCAG		59	8302263	8302281	TATGTGAAATTGGGAGTGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Btk29A	FBgn0003502	FBtr0079616,FBtr0112836,FBtr0079617	2	3	6	142	2L	8298083	8298102	CTTTCAGCTACTTCGATGTG		58	8284050	8284128	TTGGAACGGATAACCATCC		59	NA	
Drosophila melanogaster	50	CG8349	FBgn0032003	FBtr0079594	1	1	1	60	2L	8216175	8216194	AATCTTCGAAAGGTACTGGG		59	8216217	8216235	CTAGCTCGCATAGAAATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5973	FBgn0031914	FBtr0079446,FBtr0079448,FBtr0079447	2	3	3	127	2L	7444741	7444759	GATCTCCCATATTGAGGCG		59	7444849	7444935	TGTCAGCCAGTTCATAATCC		59	NA	
Drosophila melanogaster	50	CG5181	FBgn0031909	FBtr0079467	3	1	1	61	2L	7409419	7409440	GATATTGTCAGACTGACAAAGG		58	7409379	7409399	GAATAAAGGGTCAGACAATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sip2	FBgn0031878	FBtr0079360,FBtr0079357,FBtr0079361,FBtr0079359,FBtr0079358	1	5	5	60	2L	6962872	6962890	AGTTCTTACGAAACAGCCA		59	6962830	6962848	ATTCGTCGACGTTTAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9507	FBgn0031808	FBtr0079255	3	1	1	63	2L	6382413	6382431	ATCCTACGTAAGCTCACTG		58	6382458	6382476	GTTCTCAGCCAAGATTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hoe2	FBgn0031649	FBtr0077394,FBtr0114514	2	2	2	80	2L	4935314	4935333	GCTTTGGATTTCTGACTGTG		59	4935176	4935274	GAAGTATATCCTGGAACACCTG		59	NA	
Drosophila melanogaster	50	CG2950	FBgn0031637	FBtr0077411,FBtr0077409,FBtr0077410	2	3	3	87	2L	4845309	4845327	CAAACCGACCAAGATTCCT		59	4845145	4845259	CTTGATGCCCATTACTTTGC		59	NA	
Drosophila melanogaster	50	CG15435	FBgn0031608	FBtr0077441	3	1	1	60	2L	4460023	4460041	GACTACGAGATATTCGCCA		58	4460065	4460083	TGAGAAACTCGTTTGTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tutl	FBgn0010473	FBtr0089269,FBtr0089270,FBtr0089268,FBtr0089271	1	4	4	164	2L	4295612	4299076	AATATTCCAGAAGACGCCG		59	4303347	4303368	CTCATACCAGATATAGATGGGC		59	NA	
Drosophila melanogaster	50	CG15425	FBgn0031591	FBtr0077471	1	1	1	61	2L	4257886	4257904	GAATACAGGACTTCCGGTG		59	4257929	4257947	GATTCACGTACTGCATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2955	FBgn0031585	FBtr0077468	2	1	1	60	2L	4150407	4150428	CATTCATAGAACTGAAACGGAC		59	4150446	4150467	TGCTATAAGAGAAACTCGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bowl	FBgn0004893	FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493	3	4	4	122	2L	3780466	3780484	CACCAAGTCGTACAATCTG		58	3780569	3781912	TGAATATACCTGTGATCCCT		57	NA	
Drosophila melanogaster	50	lilli	FBgn0041111	FBtr0077634,FBtr0077633,FBtr0077632	3	3	3	292	2L	2947157	2947175	GACATTCCGTCGAGTAGTG		59	2947431	2947622	TTGTTGACATCCTTCTCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	NTPase	FBgn0024947	FBtr0077680,FBtr0077683,FBtr0077681	1	3	4	143	2L	2882504	2882702	CTTTGTCTTTGGCTTCGTC		59	2882379	2882397	CGATTGAACTTGTAGGCCA		59	NA	Nonspecific
Drosophila melanogaster	50	oho23B	FBgn0015521	FBtr0077621,FBtr0077622,FBtr0077623	3	3	4	164	2L	2856560	2856643	CATTACCAAGAACTTCTAAGCG		59	2856766	2856786	AGCTAATCCTGGTTCTAACTG		59	NA	InUTR
Drosophila melanogaster	50	CG16995	FBgn0031412	FBtr0077758	3	1	1	97	2L	2308450	2308468	CGTCGTTTCAAGGTAACAC		59	2308529	2308596	ATAGATGGTACTGCCACTC		58	NA	
Drosophila melanogaster	50	cpb	FBgn0011570	FBtr0077881	2	1	1	60	2L	1705705	1705723	CTTCGATCAGTACAGGGAG		58	1705747	1705765	ATCCCATAGGTAGACGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18131	FBgn0031343	FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934	1	4	6	62	2L	1500147	1500167	GCCAGCTTATATCTAATGACC		58	1500037	1500123	ATATGTTGACTTGAGTGGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG31659	FBgn0051659	FBtr0077943	2	1	1	80	2L	1359514	1359533	AGTCGACGGATTTCATAGAG		58	1359404	1359471	TTACAGTACCAGTTTGGGT		58	NA	
Drosophila melanogaster	50	CG33922	FBgn0053922	FBtr0091926	3	1	1	130	2L	1343758	1343777	ATAACGTAACCGTAGATGGC		59	1343587	1343666	AATGATATCGTGGTCGTAGG		59	NA	
Drosophila melanogaster	50	Oseg3	FBgn0031262	FBtr0078078,FBtr0078077	1	2	2	86	2L	554391	554409	AATTCTGGAGATCCAGCAG		59	554262	554341	AGTTCGGGTTTAATCAGCA		59	NA	
Drosophila melanogaster	50	CG11604	FBgn0031242	FBtr0078139	1	1	1	60	2L	272446	272464	TCCGGTAGTTATCATGGTC		58	272404	272425	GGATGGCAATATTTAGATTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpp30	FBgn0022246	FBtr0078143	2	1	1	112	2L	252059	252077	CATAAGATCGAGCATCTGC		58	251911	251983	TTATGGGAGACACTCATCG		58	NA	
Drosophila melanogaster	50	r-cup	FBgn0031142	FBtr0077269	2	1	2	127	X	20895470	20895488	GATCGATCCACCTACTCCT		59	20895092	20895110	AAGTAGCTCCTTTCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1304	FBgn0031141	FBtr0077271	2	1	1	60	X	20836232	20836250	ATTCTGTCCAGGAACTACG		58	20836190	20836208	CATTTGAGTCCTGATTGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bap	FBgn0010380	FBtr0074789	2	1	1	83	X	19626776	19626794	AATGGTTTGGATCATTGGC		58	19626841	19626924	TCCTGGAATCCTTCAAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32551	FBgn0052551	FBtr0074564	2	1	1	106	X	18333120	18333139	AAATATAACCCAAGCCTGGA		58	18333208	18333849	TTTCATTGGGTGAATCGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7772	FBgn0030883	FBtr0074540	3	1	1	108	X	17800362	17800695	TCATCAATCGGATCACCTG		59	17800272	17800290	ATGATAAGCGGTATGCTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG32495	FBgn0052495	FBtr0089800,FBtr0089799,FBtr0089801	3	3	3	82	X	17798672	17798835	ATAAGCTGCACAATATGCC		58	17798881	17798899	CTTTGCATAGATGTCCCAC		58	NA	Nonspecific
Drosophila melanogaster	50	CG6506	FBgn0030874	FBtr0074465	3	1	1	62	X	17744852	17744870	CCCTCATTGAAACGTACTC		57	17744956	17744974	TTAGGCACGGATTCAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15816	FBgn0030866	FBtr0074459	2	1	1	61	X	17633498	17633516	AAAGTCCTCGAGCAATACG		59	17633540	17633559	TTGTTTCGGAATTCGTTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34327	FBgn0085356	FBtr0112529	1	1	1	209	X	17117599	17117617	GATCTGGAGGATGGAAGAG		58	17117408	17117426	ACAGTGCACTGGATAATCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4949	FBgn0030813	FBtr0074381	2	1	2	63	X	16973029	16973107	TAATTTGGCAAAGCTATGCG		59	16973133	16973151	ACTGGTGATCAGTAAGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15865	FBgn0015336	FBtr0074375	2	1	1	60	X	16557726	16557873	CCATCTTCGAAGAGTCCAC		59	16557684	16557703	TCTCAAAGACCACATAGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8924	FBgn0030710	FBtr0074131,FBtr0074130	3	2	2	68	X	15837294	15837312	GAATGTCCACCTATCCCTG		59	15837402	15837421	GAATCCAAGTATTGCTGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8952	FBgn0030688	FBtr0074193	3	1	1	68	X	15660250	15660343	AGATAATCGCATAGTGTCCG		59	15660201	15660219	CTCTTCAGTATGACCTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6340	FBgn0030648	FBtr0074040	1	1	4	68	X	15377389	15377407	AGAAGACAAAGCCGATGTC		59	15377439	15377457	TTACCTCATCAATGCGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9164	FBgn0030634	FBtr0074013,FBtr0074012,FBtr0074014	3	3	3	165	X	15276203	15276279	ACAAGTCCGACTTCTACAC		58	15276056	15276074	TAGTCCTTGTAGATGCTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Lsd-2	FBgn0030608	FBtr0110969	2	1	3	261	X	14968211	14968229	CCAGGAGATCTACAACCAG		58	14966999	14967989	AACATTATCTTCCTCGACATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12177	FBgn0030510	FBtr0073846	3	1	1	140	X	13572778	13572898	ATATACACATTAACTGGCGC		58	13572657	13572675	GATTCCACGTATCGATCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11164	FBgn0030507	FBtr0073809	3	1	1	89	X	13562478	13562568	AAAGAGCAATATCGCTGGA		59	13562621	13562639	ATTTAAGGTTCCCTGGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4400	FBgn0030434	FBtr0073693	3	1	1	125	X	12803066	12803084	TGGACAAGAAGTATCGCAC		59	12802712	12802977	GTTTCTCGCTCTCAAAGTG		58	NA	
Drosophila melanogaster	50	CG34321	FBgn0085350	FBtr0112523	2	1	1	200	X	11625579	11625597	TCGAATCGAACGTGAAGAG		59	11625397	11625415	CAAATCGCTCGGTATACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11699	FBgn0030311	FBtr0073510	2	1	1	179	X	11464973	11464991	GAAGACGGATAGCAAGGTC		59	11465134	11465212	AACTCCTGGAAATCCTTGG		59	NA	
Drosophila melanogaster	50	Or10a	FBgn0030298	FBtr0073548	3	1	1	92	X	11310698	11310716	TTATTTCGAGTTCTGTGCC		57	11310565	11310642	TCCAAGTGATCAGTGTAGG		58	NA	
Drosophila melanogaster	50	ras	FBgn0003204	FBtr0071496,FBtr0071494,FBtr0071495	3	3	3	92	X	10641987	10642006	ATCTACCCTATTTGGAGTGC		58	10642057	10642150	GGCCATTATAGATCATATCCCTC		59	NA	
Drosophila melanogaster	50	CG12075	FBgn0030065	FBtr0071253,FBtr0071254	3	2	2	105	X	8761810	8761828	CTATTTGGTGGACAGGTCC		59	8762036	8762054	TGGAATCAGATGCTTCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10959	FBgn0030010	FBtr0071157	1	1	1	60	X	8043587	8043606	CAACCAAAGGACTACAACTG		58	8043629	8043647	TTAGGTATTTCTGCGTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14435	FBgn0029911	FBtr0071042	3	1	1	83	X	6735741	6735759	TAAGTTTGTGTTGCCAGAC		58	6735598	6735696	AGTACGTCCTCGTTATATGAG		58	NA	
Drosophila melanogaster	50	CG15894	FBgn0029864	FBtr0112955,FBtr0070901	1	2	2	214	X	6215017	6215856	AATGTATTCGAGCAGGTCG		59	6217753	6217771	TAACTCTGGTGGTCATCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mlc-c	FBgn0004687	FBtr0070783	3	1	1	132	X	5514314	5516297	GATCAGTTGGCTGAATTCC		58	5514200	5514218	ACTTCTTGACATCCGACTC		59	NA	
Drosophila melanogaster	50	CG3239	FBgn0029769	FBtr0070793,FBtr0070792	2	2	2	60	X	5389628	5389647	CCTTTCGTCTTCAAGTACTC		57	5389587	5389605	TGCTTCCAAATGTCATACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3309	FBgn0029756	FBtr0070798	2	1	1	159	X	5222335	5222354	TACTTCACCATTCACGACAG		59	5222136	5222213	TGTTCTTCTGGTTGTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdk7	FBgn0015617	FBtr0070756	1	1	1	109	X	5202772	5202862	GTTTGCCACAGTTTACAAGG		59	5202682	5202700	CTGTCCTGTTGATACCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15472	FBgn0029724	FBtr0070736	1	1	1	60	X	4663828	4663846	CAGACCATATGTCTGGGAG		58	4663786	4663806	GTAATTGGCTATGCTTACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3556	FBgn0029708	FBtr0070674	2	1	1	131	X	4427044	4427062	TTCTTTAAGGCCATGACCC		59	4427225	4427306	CCAGTAGTGATACCCTCGA		59	NA	
Drosophila melanogaster	50	CG32779	FBgn0052779	FBtr0070601	3	1	1	157	X	3697166	3697184	CAGAATGTCAGTCCTGGTC		59	3697305	3697323	CACGAGAGGTTCTTATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3939	FBgn0040396	FBtr0070508	2	1	1	65	X	3069646	3069664	GAGAAAGACAAGGACGGAC		59	3069967	3069986	ACTCATGATAGTTTCCTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17776	FBgn0040899	FBtr0070390	2	1	1	122	X	2079003	2079021	GAAGAAGCCGATTAACACC		58	2079107	2079125	GTGCAGTAGTGGTAGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32803	FBgn0052803	FBtr0100306,FBtr0070356	1	2	2	60	X	1794976	1794998	GACTAGTCATAATGGTACCTCTC		59	1794938	1794956	GCAAATCCGAAATAGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3056	FBgn0024987	FBtr0070215,FBtr0070214	3	2	2	106	X	1265711	1265729	CAATTACTTGCCACAGGAC		58	1265798	1265957	TATATCCGGTCTTGAAGTCG		58	NA	
Drosophila melanogaster	50	CG11378	FBgn0040364	FBtr0070197	1	1	1	88	X	1065650	1065668	TCTAAGGTGGATCCTAGCC		59	1065720	1065855	ATATCCTCGATGCTAACGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40685	FBgn0085767	FBtr0114217	1	1	1	61	U	9461350	9461368	GTTGGCTAATGCAACAACC		59	9461307	9461326	AACATTAACCTGATGGATGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR41535	FBgn0085795	FBtr0114249	1	1	1	60	U	8853700	8853718	CAGAACGAGCACATAAACC		58	8853741	8853760	TGAAGATTGAGATAGTCGGG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40375	FBgn0085733	FBtr0114182	1	1	1	80	U	1361949	1361970	GAAAGTTAAGGAAACAGAGTGG		59	1356337	1361911	TACCTATAAGAAACGTATGCCG		59	NA	
Drosophila melanogaster	50	CG11340	FBgn0039840	FBtr0085766	2	1	1	281	3R	27130061	27130731	ATCTTCAACAGAATCTGGC		57	27129798	27129816	AGTCCAGGTTCTTCATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15531	FBgn0039755	FBtr0113309,FBtr0085572	3	2	2	112	3R	26021246	26021264	CGGTCTTCTGAAGTACTCG		59	26021090	26021171	ACAGCAGGACATAGAATCTC		58	NA	
Drosophila melanogaster	50	CG34296	FBgn0085325	FBtr0112492	2	1	1	79	3R	25548494	25548512	GTGGATCAACCGTTAACAC		58	25548554	25548573	ATAGTCGTAATCCGAACTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ppk19	FBgn0039679	FBtr0085451	1	1	1	110	3R	25499304	25499323	CTTCGTTGACTTATAACCGC		59	25499396	25499463	GAACTCCATCAATGGGAGG		59	NA	
Drosophila melanogaster	50	CG14519	FBgn0039619	FBtr0085340	1	1	1	125	3R	24817029	24817047	TTTAATTGGTACAGTGCGC		58	24817136	24817154	TGTTGCAGATATAGCTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14523	FBgn0039612	FBtr0085349	2	1	1	60	3R	24704850	24704868	AATAGATGAGCTGGTGACG		59	24704808	24704829	CTCATTGAAGACATAGTTAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12426	FBgn0039552	FBtr0085227	1	1	1	65	3R	23697806	23697824	TGGTTCTCGTCATATTCCG		59	23697646	23697777	TAAACGTCATCGCAATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085144,FBtr0085137,FBtr0085138,FBtr0085145,FBtr0085140,FBtr0085143,FBtr0085139	3	7	12	135	3R	22892191	22892337	ATCGGATACCTTTGTCTTCC		59	22892075	22892094	GAAGTTTCTAAGGTGTTGGC		59	NA	
Drosophila melanogaster	50	NepYr	FBgn0004842	FBtr0085100	1	1	1	98	3R	22855542	22855560	GTTTATTGCACTTGCCACC		59	22855622	22856386	CGGCAAATGTATTTCTCGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG5500	FBgn0039461	FBtr0085064	1	1	1	137	3R	22705551	22705818	ACATAGAGATACCTCCCGAG		59	22705918	22705936	TCTTGCTCAGCACAATCTC		59	NA	
Drosophila melanogaster	50	CG12290	FBgn0039419	FBtr0084990	3	1	1	60	3R	22058037	22058056	TCTGAGTTACATGAGCTCCT		59	22058077	22058097	GTATTTGAATAGCGAACTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8957	FBgn0039393	FBtr0084946	3	1	1	279	3R	21743338	21743414	AGACATGACCTTTGATCCA		58	21743716	21743735	TATGACTTGATCCTTGGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11913	FBgn0039331	FBtr0084833	3	1	1	170	3R	21184208	21184339	CATCAAACAAAGAAGGCCC		59	21184473	21184491	GAAATGTACGATCAACGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5807	FBgn0027539	FBtr0084739	1	1	1	114	3R	20633194	20634328	CTTATGCTGATTTGCACCC		59	20633098	20633116	TGTAGAAGGCGCTAAACTC		59	NA	
Drosophila melanogaster	50	CG6454	FBgn0039187	FBtr0084608,FBtr0084609	3	2	2	81	3R	20175505	20175618	TCAACAAGTTCCCTCAGTG		59	20175662	20175681	TCATTCACCACCAATTCCTC		59	NA	
Drosophila melanogaster	50	CG13597	FBgn0039124	FBtr0084525	2	1	1	60	3R	19718390	19718408	GAGTAGTTCCTCATGGCTC		59	19718348	19718367	AGGATTAAATGACGACACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pli	FBgn0025574	FBtr0112908,FBtr0084527,FBtr0112907	3	3	3	94	3R	19691346	19691364	GAATCTCCCATACTGGCTG		59	19688922	19691288	AAGTAACCATTGTAGCCGA		58	NA	
Drosophila melanogaster	50	CG17381	FBgn0039079	FBtr0084415	3	1	1	60	3R	19311003	19311021	TGGTCTGCATGATTTCTGG		59	19311045	19311063	GATCTTACCCGCCTTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4704	FBgn0039029	FBtr0084314	1	1	1	74	3R	18670520	18670538	TCCTGAAGTTTCTACACGC		59	18670408	18670482	AACTGGACTCCTTCAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dcr-1	FBgn0039016	FBtr0084324	2	1	1	80	3R	18560351	18560369	TTAACGATGTGATTGACCG		57	18560226	18560309	CGGACAATAAGTAGTACTCCT		58	NA	
Drosophila melanogaster	50	CG7044	FBgn0038854	FBtr0084035	2	1	1	109	3R	16925092	16925112	ACTCGGAAGTCTATGTAAGAG		58	16924936	16925023	AAGATGGTCTACAAGATCGAG		59	NA	
Drosophila melanogaster	50	CG31199	FBgn0051199	FBtr0083930	1	1	1	67	3R	16569355	16569373	AATATGCAAAGCACCTTCG		58	16569249	16569324	CCCTTGCCATACACTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14280	FBgn0038695	FBtr0083738	3	1	1	120	3R	15085286	15085362	AAAGATGAAGCTGAGAACG		57	15085446	15085464	CATCGTTAAACCGTTCTCC		58	NA	
Drosophila melanogaster	50	CG5558	FBgn0038684	FBtr0083748	3	1	2	190	3R	14986898	14987091	CCAAAGAAAGAACACTTGGC		59	14986727	14986745	CAGTAGTTGGACCACTTGG		59	NA	Nonspecific
Drosophila melanogaster	50	Prp18	FBgn0027784	FBtr0083717	2	1	1	60	3R	14856413	14856431	AGAGCATACAGACAATGGC		59	14856371	14856390	ATCACATCCATGTCGTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fsh	FBgn0016650	FBtr0083510,FBtr0083509	3	2	2	86	3R	13556338	13556426	AGACATAACTGAACTCGATCTC		59	13556473	13556491	TGAATGTACAACGCTTCGA		59	NA	
Drosophila melanogaster	50	l(3)07882	FBgn0010926	FBtr0083504	3	1	1	62	3R	13363085	13363103	CTTAGGCTCAAACAGACCC		59	13362980	13363000	GTAAATGCGCTTAACCTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31279	FBgn0051279	FBtr0083284	1	1	1	139	3R	12257306	12257325	GTACTACGACATCTTCAGCA		59	12257427	12257930	CATCTGACTTCTCATGCGA		59	NA	
Drosophila melanogaster	50	mtSSB	FBgn0010438	FBtr0083277,FBtr0100152	1	2	2	101	3R	12030246	12030624	CAACTACAAATATGAGAACGGC		59	12030166	12030184	TTCAAGTATTCCAGCACGG		59	NA	
Drosophila melanogaster	50	CG6966	FBgn0038286	FBtr0113236	3	1	1	97	3R	10908099	10908118	TTTGGATCCTGATGAGATGC		59	10907953	10908041	CCCTAAATCGAATGTAGTAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14857	FBgn0038262	FBtr0082993	3	1	1	117	3R	10628075	10628093	ACTTTCTTACCACCTACGC		59	10628174	10628491	GCCAAGTATTCCAGAACCA		59	NA	
Drosophila melanogaster	50	su(Hw)	FBgn0003567	FBtr0082945,FBtr0082946	2	2	2	119	3R	10131798	10131884	CAGAGAAACAACTTGAGCG		59	10131697	10131715	CGTCCATATGCTCCTTGAG		59	NA	
Drosophila melanogaster	50	Sp212	FBgn0053329	FBtr0082899	2	1	1	106	3R	10049440	10049458	TTTCGAATAGCCGTCAGAC		59	10048879	10049370	GGAACGGTTACAAATTCGC		59	NA	
Drosophila melanogaster	50	GstD10	FBgn0042206	FBtr0082609	2	1	1	60	3R	8190922	8190940	TCCGAGTACTATTATCCGC		58	8190880	8190900	TCTTGTAGTTCTCCTCATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12213	FBgn0037968	FBtr0113223,FBtr0082510	3	2	3	146	3R	7791201	7791277	AGATCAAGATGAGGACGAC		58	7791073	7791093	GCACGGCTTTAATATAAAGGG		59	NA	InUTR
Drosophila melanogaster	50	mus309	FBgn0002906	FBtr0082434	3	1	1	103	3R	7564857	7564939	GGCTTCCCTAGATATCTGTG		59	7564773	7564791	ATTTGACCATAGGTGGCTG		59	NA	
Drosophila melanogaster	50	CG8478	FBgn0037746	FBtr0082133,FBtr0082132	3	2	2	97	3R	5590340	5590415	TAACTGAAGTATCCAACGAAGG		59	5590472	5590491	AGAGACTTCGTTCACTACCT		59	NA	
Drosophila melanogaster	50	CG8478	FBgn0037746	FBtr0082133,FBtr0082132	1	2	2	94	3R	5590340	5590415	TAACTGAAGTATCCAACGAAGG		59	5590470	5590488	GACTTCGTTCACTACCTCG		59	NA	
Drosophila melanogaster	50	Prosbeta3	FBgn0026380	FBtr0082010	2	1	1	109	3R	4831658	4831676	AAGAAGGTGTTCCACATCG		59	4831567	4831585	GTCTCGTACAGATTCTTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11760	FBgn0037615	FBtr0081906,FBtr0081907	1	2	2	158	3R	4545581	4545599	CTATCTACTGCTGCTCCAG		58	4545719	4545739	GGATGTTTCTGTCTATATGGC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7352	FBgn0037581	FBtr0081842	2	1	1	129	3R	4174218	4174236	AGTGACTTAGTCCAGAAGC		58	4174328	4174401	TTTCGATTTCTAGGACTTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31146	FBgn0051146	FBtr0081541	1	1	1	81	3R	3501116	3501134	ATTGCGCTTCTATATGCAG		58	3501177	3512168	CATGTCCTGGTATTTCTTCAG		58	NA	
Drosophila melanogaster	50	dj	FBgn0019828	FBtr0089741	2	1	2	60	3R	2885193	2885292	TCCTTGAGAACTTTAAGGAAGG		59	2885313	2885331	GCGGATCGTGAATAGAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31562	FBgn0051562	FBtr0078589	1	1	1	101	3R	2010549	2010567	CATGATCCTCGAGGATCTG		59	2010766	2010784	TAGCGACTCTTCAGATTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG2919	FBgn0037348	FBtr0078743	2	1	1	78	3R	1430093	1430176	CAGAAATTACCAAGGCGGA		59	1430033	1430052	AATTCTTTCAGTTCCTTGGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31525	FBgn0051525	FBtr0078924	3	1	1	60	3R	253773	253791	CATAACAAGCATGCAACAC		57	253815	253833	TACCCTGATGATGTGTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9791	FBgn0037232	FBtr0078904	3	1	2	114	3R	138248	138329	TACTCCATATGAGGTGGCT		59	138407	138425	ACAAACATGCACTTCATCC		58	NA	
Drosophila melanogaster	50	CG10508	FBgn0037060	FBtr0078302,FBtr0078303,FBtr0078301	2	3	4	86	3L	21208530	21208549	TATTATCGAACGAATGGCCA		59	21208598	21208690	GTGACATAATCGGCTAGCA		59	NA	
Drosophila melanogaster	50	CG4825	FBgn0037010	FBtr0078214	3	1	1	102	3L	20516651	20516737	TCGGTTAGGCAATATTACGT		58	20516568	20516586	ACAGAATAGCTTCGGAGAC		58	NA	
Drosophila melanogaster	50	cyc	FBgn0023094	FBtr0074924	1	1	1	193	3L	19807834	19807922	CTTATCGATGCGAAGACCA		59	19807659	19807677	GTAGTCAGTCTGGACTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18136	FBgn0036839	FBtr0075040	3	1	1	105	3L	18994623	18994641	GTGCTGATCTCCATGAGAC		59	18994480	18994554	TCTCCAGAAAGTTCCTCCA		59	NA	
Drosophila melanogaster	50	Rad9	FBgn0025807	FBtr0075080,FBtr0112917	1	2	2	88	3L	18864945	18865071	TGCCGAATATAATCCGTGG		59	18864875	18864893	TGCCTCCAAAGTAAGTTCC		59	NA	
Drosophila melanogaster	50	l(3)neo26	FBgn0036815	FBtr0075057,FBtr0075056	2	2	2	66	3L	18814990	18815008	TTCAGCCGATTCCAAAGAG		59	18815035	18815056	CCCATCAAGTAAATATCCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6311	FBgn0036735	FBtr0075208	1	1	1	60	3L	17520616	17520637	CCAGAGATTTCATTGTTCAAGG		59	17520515	17520595	GTAAGGCGTCTACTGAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6322	FBgn0036733	FBtr0075209	2	1	1	60	3L	17506434	17506452	CTAAACGAACCCATTTGCT		58	17506392	17506410	CCTTAAGACGTCTTCTTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eig71Ec	FBgn0004590	FBtr0075586	2	1	1	102	3L	15644934	15645030	CTTGTCGATTGACACTCGA		59	15644850	15644868	GTCCTCCTTGAAGTTGGAG		59	NA	
Drosophila melanogaster	50	obst-H	FBgn0053983	FBtr0100028	1	1	1	206	3L	15521705	15521788	AGATAAAGTTCAGTGTGCCT		58	15521518	15521536	TTTCCATAGCATTTCGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gnu	FBgn0001120	FBtr0075697	1	1	1	124	3L	14796262	14796338	TATAGAGATCCCGCATCCC		59	14796156	14796174	CCAAAGAGTCCGTATCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11255	FBgn0036337	FBtr0075896,FBtr0075895	2	2	2	165	3L	13013917	13014182	TACATTTCGGGCTTCTTCC		59	13013770	13013788	AGATGATGTCCACGTAAGG		58	NA	
Drosophila melanogaster	50	Klp68D	FBgn0004381	FBtr0076030	1	1	1	175	3L	11789711	11789834	CATAGTTCAAGATCCCACG		57	11789973	11789991	AGTGCCAGATTAATCTTGC		57	NA	
Drosophila melanogaster	50	CG6767	FBgn0036030	FBtr0076416,FBtr0076415	2	2	2	145	3L	9677734	9677753	TATGCTATTCTGACGCATGG		59	9677545	9677626	GAGACATCAATGCACTGGA		59	NA	
Drosophila melanogaster	50	CG12525	FBgn0036010	FBtr0076422	3	1	1	97	3L	9536289	9536436	CCCATTGTACAAGAGTGGT		59	9536210	9536229	ACGATTAGGAAATTTCCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aay	FBgn0023129	FBtr0076457	1	1	1	60	3L	9417180	9417198	CTATGCCAACAAGATGCTG		58	9417219	9417240	CTGGTTGATATCAAAGCTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7185	FBgn0035872	FBtr0076710	1	1	1	74	3L	8305157	8305385	AGAGCTGTTTCTGATGCAG		59	8305101	8305119	GATCAGTGAAATGGCTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13678	FBgn0035859	FBtr0076700	2	1	1	97	3L	8215942	8215961	ATCCATGGATTGTAAACCCT		58	8216020	8216039	TTAATGCATCACAAGTAGGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Nmt	FBgn0020392	FBtr0076728	3	1	1	60	3L	8169858	8169876	ATTATCGATTGCTTCGTGG		57	8169816	8169835	AGTAGCTAGTCAGATCAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7548	FBgn0035792	FBtr0076830	2	1	1	108	3L	7499254	7499272	CTCCAGCTTGCTTCTACTC		59	7499164	7499182	TACATTCTGTTGGGTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32407	FBgn0052407	FBtr0077032	2	1	1	97	3L	5916305	5916323	ATCAAGAGCATCATCGGAG		59	5916384	5916465	TTAAAGGCAGCATCTAGCA		58	NA	
Drosophila melanogaster	50	CG17150	FBgn0035581	FBtr0073351,FBtr0073349	1	2	3	80	3L	4888911	4889142	TATTTCACGACGGAGTACC		58	4889186	4889204	TTCACTACTCGGAATGTGC		59	NA	
Drosophila melanogaster	50	axo	FBgn0026729	FBtr0073368	3	1	1	125	3L	4673380	4674963	CAATTAAGACTTTGCCGTGAG		59	4673275	4673294	AATCACGTAGAGTGCATAGG		59	NA	
Drosophila melanogaster	50	CG32240	FBgn0052240	FBtr0073336	2	1	1	237	3L	4381319	4381395	CATTTGTGACGGTTCTCAG		58	4381037	4381055	TTCTTCATGTACTTGGCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Gr64b	FBgn0045478	FBtr0073195	1	1	1	82	3L	4029936	4030007	CTTGGTCCATAGAGGTTCAG		59	4030052	4030070	GAGGTAGAAGAATCCGCTG		59	NA	
Drosophila melanogaster	50	CG12766	FBgn0035476	FBtr0073172	2	1	1	80	3L	3938886	3938967	CGATATGTGATTGAGCTGG		58	3938824	3938843	GAAGACATTGAAGTTCTCCT		57	NA	
Drosophila melanogaster	50	CG14973	FBgn0035451	FBtr0073130	2	1	1	223	3L	3506994	3507012	TGCTAAGCTGGAAGATGTC		59	3507199	3507307	GATTCTCCGCCTTAATCGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	mu2	FBgn0002872	FBtr0072857,FBtr0072856	1	2	2	80	3L	1945489	1945507	TAAGTCCCAATGAGGAGTC		57	1945372	1945448	TCTGACAGATCTTCTGATAGTG		58	NA	
Drosophila melanogaster	50	CG13930	FBgn0035256	FBtr0072803	2	1	1	181	3L	1671167	1671186	CCAGTCGGACATATACTACG		59	1670945	1671023	AGATACGAATGCACCAGTC		59	NA	
Drosophila melanogaster	50	RpL23A	FBgn0026372	FBtr0072805	3	1	1	137	3L	1667572	1667590	TCATCAAGTACCCACTGAC		58	1667453	1667471	CCACCTTGATGTCGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	klar	FBgn0001316	FBtr0072565,FBtr0112807,FBtr0110818	2	3	4	71	3L	436258	436277	CATCTGAAGAACGAAGTGAG		58	436144	436224	CAGTTGCGTGTTGATTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG16971	FBgn0035114	FBtr0072498,FBtr0072497,FBtr0072496	2	3	3	229	3L	224178	224985	GTGAAGTCGCAAACATGTG		59	225763	225781	CTTGTTTGTGTTCCGTTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	NitFhit	FBgn0024945	FBtr0072483	2	1	1	60	3L	204658	204677	GAGCAGGAGCTTGATATAGG		59	204699	204718	GATACAGAGATTGAAGCACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33408	FBgn0053408	FBtr0086400	1	1	1	62	2R	15633428	15633446	AATACATCGGTTCTCGTCC		59	15633384	15633402	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3770	FBgn0035085	FBtr0072393	3	1	1	103	2R	20833761	20833780	TCTATTTCTGCATCCGATGG		59	20833843	20833914	ATGAAACTCCTATGCTACAGTC		59	NA	
Drosophila melanogaster	50	CG34214	FBgn0085243	FBtr0112407	2	1	1	138	2R	20553345	20553422	ATAAATCCTCTGTACCCGC		58	20553225	20553243	AGCGTATGTTAGCATCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4622	FBgn0035021	FBtr0100276	3	1	2	179	2R	20422605	20422679	AATACATCGATTCAGGACAC		57	20422445	20422465	GGCTGATATCATTAGTTCCTG		57	NA	
Drosophila melanogaster	50	CG4286	FBgn0034601	FBtr0071627	1	1	1	78	2R	17065632	17065712	GTTCTCGAAGAGCTAACCA		59	17065572	17065590	TCTCTTCATCGAAGTACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mago	FBgn0002736	FBtr0071569	3	1	1	261	2R	17016216	17016234	TTACCTACGCTACTACGTC		57	17016459	17016535	GATGACGATCTCCAGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18065	FBgn0034519	FBtr0100677	2	1	1	73	2R	16439217	16439294	GCAATGAGATTATGCACCA		58	16439162	16439180	ATTCTGGTGGCTGTAATCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CkIIbeta2	FBgn0026136	FBtr0086278	1	1	1	60	2R	16177428	16177447	ATGCTCGCTTTATCCTAACC		59	16177470	16177488	CCCTTGTTGTACTTGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Scs-fp	FBgn0017539	FBtr0086552,FBtr0086553,FBtr0086554	3	3	3	136	2R	15280457	15280475	CTGAAGATGCAGAAGACCA		59	15280283	15280358	CAGATAAGCGACCTATCGAC		59	NA	
Drosophila melanogaster	50	FK506-bp2	FBgn0013954	FBtr0086515	2	1	1	105	2R	15178224	15178242	CTGCTCAAGGTCGAATAGG		59	15178311	15178329	TATGATGTTCTTCGGCTCG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7137	FBgn0034422	FBtr0086505	1	1	1	60	2R	15115145	15115163	GACTACGAAGATGTGGAGG		59	15115187	15115205	CTATTCTTCCGGACTTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k07433	FBgn0022085	FBtr0086949,FBtr0086948,FBtr0086950	2	3	3	82	2R	13419274	13419292	GTGATAGAATCGCTGATGG		57	13419150	13419229	CCAGATATTCTTCGTATGGC		57	NA	
Drosophila melanogaster	50	Cbp53E	FBgn0004580	FBtr0087056	3	1	1	85	2R	12872275	12872350	GACATTAGTCCAGAGGCAG		59	12872399	12872417	CCATCCTGATTGTCATCGT		59	NA	
Drosophila melanogaster	50	Vkor	FBgn0053544	FBtr0091510	3	1	1	63	2R	12666129	12666147	CAAGTAAATGCTCCCAACG		59	12666173	12666247	AAGAGCTCAAGAAGTACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8317	FBgn0034140	FBtr0087122	1	1	1	64	2R	12462676	12462694	GTTCAACTACAGTCCCTCG		59	12462630	12462648	AATCAAAGTACGGCTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15711	FBgn0034122	FBtr0087167	2	1	1	60	2R	12251214	12251232	AGCTCTCATTCAAAGGTCG		59	12251172	12251193	GTTCCGGATATAGCAAATACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8435	FBgn0034084	FBtr0087249	2	1	1	168	2R	12057719	12057737	AGTGGACTACAACACTCTG		58	12057509	12057530	CTTGATCTCCTCAATGATTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30084	FBgn0083919	FBtr0087313	1	1	6	146	2R	11651546	11651564	GTTTCCGTTAAAGCCTTGG		59	11651322	11651436	GATAAAGGGTCCTGAGGTG		59	NA	
Drosophila melanogaster	50	Obp51a	FBgn0043530	FBtr0087420	3	1	1	237	2R	10912208	10912294	ATCCGCTTTATTCGAATCTG		58	10911990	10912008	CGATAGTTTGAGGCATGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LamC	FBgn0010397	FBtr0087512	1	1	1	201	2R	10459774	10459793	CTACAGAATCTGGAGGACAC		59	10459522	10459540	TTTCGAGATCCAACGACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8550	FBgn0033742	FBtr0087935	3	1	1	60	2R	8359772	8359791	AAGAACTGGTCAATCAGTGG		59	8359814	8359832	CCATTCAAGCCGTATACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8831	FBgn0033737	FBtr0087952	2	1	1	94	2R	8316489	8316507	CTGACAGAACTCAAGAAGC		58	8316346	8316433	ATCCTTAGTATGCGATGACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8490	FBgn0033715	FBtr0087899	1	1	1	66	2R	8223112	8223130	TAGCATATCCATGCACCTC		58	8223160	8223178	TTACTGGATCCATCAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17739	FBgn0033710	FBtr0087893	1	1	1	80	2R	8194902	8194921	TGGATGATAACTATGTGCTG		57	8194962	8195075	CACTGAGGCTAACATTATACC		57	NA	
Drosophila melanogaster	50	CG8407	FBgn0033687	FBtr0087985	2	1	1	60	2R	8041215	8041411	ATACTCATCGAACTACGAGC		59	8041432	8041452	GAACTTCTTGTCCATGTTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8979	FBgn0033669	FBtr0088053,FBtr0088051,FBtr0088052	3	3	3	133	2R	7855440	7855459	TTCTAGACCCTGTATTCACG		58	7855269	7855344	ACTTGGAATGAAGGATCCG		59	NA	
Drosophila melanogaster	50	CG13203	FBgn0033628	FBtr0088130	1	1	2	163	2R	7263313	7263331	AGGATAACAGTTCAGTGGC		59	7263780	7263798	TATCATGTGCGAGTACTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	2	12	12	89	2R	6499951	6500254	GGCATATGGACATGTATAACTC		58	6500304	6500322	TATAGTGCGGTTCCTTCTG		58	NA	
Drosophila melanogaster	50	CG2269	FBgn0033484	FBtr0088407,FBtr0088408,FBtr0088409	1	3	3	114	2R	5982474	5982563	CTATCTATGTGGTGCCTCAC		59	5982640	5982658	GATCATCAGGATGGAACGG		59	NA	
Drosophila melanogaster	50	CG1407	FBgn0033474	FBtr0088436,FBtr0088435	1	2	2	91	2R	5919620	5919727	CCAGATCAATGGAGGATACC		59	5919548	5919567	GCAAAGTTGTTAAGAATGCG		58	NA	
Drosophila melanogaster	50	CG30356	FBgn0050356	FBtr0088717	2	1	1	60	2R	4616876	4616894	GACATTCGATGCTAAAGCA		58	4616834	4616852	AGAAACTGAAAGAACGGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PGRP-SC2	FBgn0043575	FBtr0088709	2	1	1	101	2R	4604832	4604850	CTGGGCAACTACAATACCA		59	4604915	4604933	GTATCCGGAAACGATCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14755	FBgn0033282	FBtr0088738	2	1	1	80	2R	4235818	4235836	CTGAATCTGTGCATTACCC		58	4235880	4235898	TTAGCCATGAGCTGATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8708	FBgn0033271	FBtr0088809,FBtr0088808	1	2	2	60	2R	4048238	4048256	GTTGAAGCATGATCATCGC		59	4048196	4048214	TACCTCCTTCTTCAACTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30381	FBgn0050381	FBtr0113374	3	1	2	107	2R	3818098	3818176	CGTTTGAAGAGGTTAAATGC		57	3818010	3818028	CGTAATCTTTGGTGTACCG		58	NA	
Drosophila melanogaster	50	CG10465	FBgn0033017	FBtr0086094	2	1	1	65	2R	1228111	1228129	ACAATGACACAATGCTGAG		58	1228015	1228082	ATCCTTCCGAATCAGTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17665	FBgn0039997	FBtr0111269,FBtr0111268	1	2	2	83	2R	124473	124492	AGTTTGAGACATACGAACAG		57	124352	124429	GCAATATGTCCTGTATACACC		58	NA	
Drosophila melanogaster	50	CG40131	FBgn0058131	FBtr0111296	3	1	1	74	2R	80209	80228	CACATGATTCAAGATCAGGA		57	80265	80283	CTTCATATCCACAGTGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snRNA:U5:38ABb	FBgn0043021	FBtr0081294	1	1	1	60	2L	19816434	19816453	GTCGAATAAATCTTTCGCCT		58	19816475	19816494	GACTCATTAGAGTGTTCCTC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33819	FBgn0053819	FBtr0091823	1	1	1	60	2L	21461625	21461644	GGTCAATGGAAAGCTTATCC		58	21461667	21461685	CGACAGTTTGAAAGATCCA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9265	FBgn0032910	FBtr0081507	1	1	1	81	2L	21060031	21062274	ACGAAGTTGGTGATATCACTC		59	21059970	21059988	AGATGGTCAGGTGTATCCA		59	NA	
Drosophila melanogaster	50	TotF	FBgn0044811	FBtr0081310	3	1	1	79	2L	19912252	19912330	GAAGACAGTCATTCTATTTGGC		59	19912194	19912212	ATTCAGGATCACTCTGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15173	FBgn0032744	FBtr0081178	2	1	1	81	2L	19044078	19044167	TTGACAAAGAATTGGTTCGG		58	19044016	19044034	CGAAGGCCTCCTTAAAGAG		59	NA	
Drosophila melanogaster	50	CG17321	FBgn0032719	FBtr0081110	3	1	1	142	2L	18853449	18853547	TATTGGTGTTATCCTCGGC		59	18853653	18853671	GAGACACGTGATGAGTAGC		59	NA	
Drosophila melanogaster	50	CG5050	FBgn0032637	FBtr0080981	3	1	1	99	2L	17453347	17453365	GTTATTCACCATGGTGGTG		58	17453428	17453523	CTTCATGGAGCTATCCTGG		59	NA	
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0110935,FBtr0080978,FBtr0080975,FBtr0110934,FBtr0080977,FBtr0080976	3	6	6	142	2L	17400817	17400900	CATTGGAGGCAAGAATGGA		59	17401006	17401024	TAGGCTCATCCAATTCCAC		59	NA	
Drosophila melanogaster	50	CG34106	FBgn0083942	FBtr0110785	1	1	1	60	2L	17171656	17171676	CGATTACTACGAGTTCTATGC		58	17171695	17171716	GGTATTAACTCTGTGTTCTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cact	FBgn0000250	FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847	2	4	4	64	2L	16314857	16322976	GATTCGCAACTACGATGGA		59	16314811	16314829	AGATATCAATGTGACCCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4935	FBgn0028897	FBtr0080825	1	1	1	109	2L	16263173	16263272	TCGCATAAGTGATAATGGC		57	16263345	16263363	GCAAATCTGTCGAGAAGAC		58	NA	
Drosophila melanogaster	50	CG15253	FBgn0028948	FBtr0080782	1	1	1	61	2L	15616050	15616123	GATGAAGAACATCGTAACCAC		59	15616009	15616027	AGGCATGAAATGGATTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wor	FBgn0001983	FBtr0080740	1	1	1	62	2L	15425379	15425397	AAGAAGCGTCCGATAATGG		59	15425273	15425355	TCCTTCATCATGACTTAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst35Bb	FBgn0013301	FBtr0080681	1	1	1	77	2L	14882311	14882329	GAAAGGATAGATACCGCCG		59	14882203	14882221	ATTACTTGCAAATCCGTCG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG15283	FBgn0028844	FBtr0080632	3	1	1	135	2L	14447986	14448600	AAAGAAACTACAGAGGGCG		59	14447400	14447419	GAAAGTGATAAACGATGGCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG16888	FBgn0032533	FBtr0080572	2	1	1	60	2L	13813211	13813230	CCGCTTATAGATTGAGTTGC		58	13813170	13813188	GAACGATTGGAGGTATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cmet	FBgn0040232	FBtr0080215	1	1	1	80	2L	11262290	11262308	AGCTTGAGACGGAAATAGC		59	11262165	11262248	CAAAGGTAATCGATTTCCTCG		59	NA	
Drosophila melanogaster	50	l(2)06225	FBgn0010612	FBtr0110872,FBtr0110873,FBtr0080167	3	3	3	270	2L	10976161	10976268	GATCAGGACTTGTGAACAG		57	10975909	10975927	TTGTAGCCTACAATGTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4908	FBgn0032195	FBtr0079950,FBtr0079949	3	2	2	60	2L	10223340	10223359	ATGGATTACGATCAGAGGAG		58	10223382	10223400	CACAAAGTTTGTCTCCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5734	FBgn0032191	FBtr0079960	1	1	1	60	2L	10206166	10206184	AGAGATGCCAAGCTAACTG		59	10206124	10206142	CAACGGTCTGGTTGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ggamma30A	FBgn0028433	FBtr0079796,FBtr0079797,FBtr0079795	2	3	3	82	2L	9272595	9291061	AATCCATAGCAGAAATGCG		58	9291107	9291125	ATTGTTCTTCTTATCCGGC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG7231	FBgn0031968	FBtr0079529,FBtr0079530	2	2	3	129	2L	7986072	7986144	GAACGTAAGTTTGCCTACC		58	7986237	7986255	CTGTTTGTAGCGCATACAG		58	NA	
Drosophila melanogaster	50	CG7115	FBgn0027515	FBtr0079523,FBtr0079524	3	2	2	127	2L	7823092	7823465	GGAGGATAGGTTTATTATCGAGG		59	7823552	7823570	AGATGTTCTTCACCAGCAC		59	NA	
Drosophila melanogaster	50	CG3430	FBgn0031875	FBtr0079350	2	1	1	285	2L	6958282	6958360	CCCAAAGAAGGATTATGAGAC		58	6958671	6958691	CTTAGAATCGGCATTAATGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	sens-2	FBgn0051632	FBtr0079341	3	1	1	284	2L	6832394	6832412	AATTCAGCGACCTGTACTC		59	6833112	6833130	AGTAGTTGCAGGGATAAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Spn27A	FBgn0028990	FBtr0079321	1	1	1	60	2L	6671917	6671935	AGGAATTCAACGTAAACCG		58	6671875	6671893	ATGTTACCAGTGGACTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34180	FBgn0085209	FBtr0112373	1	1	1	82	2L	6060609	6060682	CAAGGAATATCAGTTCATCCC		58	6060726	6060744	TGCATATGCTTAAGGGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9098	FBgn0031762	FBtr0079229,FBtr0079228	3	2	2	99	2L	6009175	6009248	AACAGCAAGCAAGTTTGAC		59	6009094	6009112	CATCTTGAACGTGTTGAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ucp4B	FBgn0031758	FBtr0079174,FBtr0079173	2	2	2	60	2L	5969915	5969935	TTAACACAGTCTTTAGGCCAG		59	5969956	5969975	AACTTGGGTCTTTCCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8892	FBgn0031664	FBtr0079045,FBtr0079046	2	2	2	60	2L	4980268	4980287	CTTTATTCAGGAGGATGCAC		58	4980227	4980245	GTCATCATCGATGTACGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15425	FBgn0031591	FBtr0077471	1	1	1	69	2L	4258161	4258238	TTCATAGTGCTTGCAAACG		59	4258271	4258289	TTACTCATGTACGTGGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15387	FBgn0031403	FBtr0113015,FBtr0077841	1	2	2	60	2L	2226104	2226123	ACTCGAAGAAACTCTCAGAG		58	2226063	2226082	TGCATCATGAGAATCATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Got2	FBgn0001125	FBtr0077868,FBtr0100359,FBtr0077867	3	3	3	255	2L	1986023	1986041	TTCAAGAAGGACACCAACC		59	1985662	1985680	CAGTTCCACTGATGGACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ptth	FBgn0013323	FBtr0078073	1	1	1	81	2L	576133	576153	CGATTTCTATGAGGATCTGGT		59	576014	576091	GAGCTCATTCGTAACTTTGC		59	NA	
Drosophila melanogaster	50	Cap	FBgn0015615	FBtr0074291,FBtr0074290	2	2	2	95	X	16483582	16483674	GATGAGATAGATCAGGCGC		59	16483505	16483523	CGTTGTCGTAATGAACTGG		58	NA	
Drosophila melanogaster	50	Aats-arg	FBgn0027093	FBtr0074178	2	1	1	116	X	15737019	15737100	AATCCAAGAAGCGATTCGA		59	15736921	15736939	CATTGCAAATTAGCTCCCA		58	NA	
Drosophila melanogaster	50	cngl	FBgn0029090	FBtr0089294,FBtr0089293	3	2	2	83	X	15293119	15293253	GCCTAATGGTATACGACGA		58	15293054	15293073	GTATCAGCGCTATCATATCG		57	NA	
Drosophila melanogaster	50	Yippee	FBgn0026749	FBtr0073789,FBtr0100168	1	2	2	60	X	13280864	13280882	TCAATTGATCAGTACCCGA		57	13280756	13280775	CACACGCTTAAACAGATAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15209	FBgn0030237	FBtr0073378	2	1	1	68	X	10736602	10736620	CAAGCTAACCTACACGGAG		59	10736652	10736670	TAAACATTGCGATTCTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071474,FBtr0071478,FBtr0071477,FBtr0071475	3	7	7	104	X	10172050	10172137	CCGAGGCCTTTAGATTCAG		59	10171964	10171982	ACAGCACAAAGTAGCTCTC		59	NA	
Drosophila melanogaster	50	CG34408	FBgn0085437	FBtr0071439,FBtr0112675	3	2	4	89	X	10120396	10120557	CCACCTATGATAATGCCCA		58	10120610	10120628	CATTCAGATCCGTCTTCCA		59	NA	
Drosophila melanogaster	50	CG15375	FBgn0029694	FBtr0070637	1	1	1	60	X	3996039	3996058	ATCCATAAGTTCCATACGCC		59	3996282	3996300	ATATAAGGCGGTACCTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	fz3	FBgn0027343	FBtr0112928,FBtr0070138	3	2	2	60	X	676920	676939	AGCATTTGTATACGAGTGGG		59	676960	676980	GCATATAGAGGAGTGATTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1674	FBgn0039897	FBtr0089118,FBtr0089119,FBtr0089117	2	3	4	81	4	254958	257026	CGCTAAATGAACCGAATGTC		59	257068	257088	GAATCATGGTCTGCTTTAGTG		59	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	3	14	14	110	3R	27690344	27690864	TAAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	CG2187	FBgn0017448	FBtr0085861	2	1	1	80	3R	27582880	27582898	TCGTGACAAATTCGTTCCT		59	27582762	27582836	TGTTCATGCCAGTAACCTG		59	NA	
Drosophila melanogaster	50	CG31202	FBgn0051202	FBtr0085510	1	1	1	60	3R	25754754	25754772	AGGCGATAGAGAAGTACTG		57	25754712	25754730	TTGTTAACGTCCATCACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0110913,FBtr0110912,FBtr0091524,FBtr0091527,FBtr0091526,FBtr0113466,FBtr0091525,FBtr0091523	1	8	9	80	3R	24745224	24745242	CCGTCATTCAAGATGATGC		58	24745283	24745961	TGGCCATGATCTTATATCTGTG		59	NA	
Drosophila melanogaster	50	gro	FBgn0001139	FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963	2	5	5	103	3R	21870081	21870172	CGCCATTATGTTATGTACTACG		59	21870236	21870254	AGTAGCTGGTTGATCAGTG		58	NA	
Drosophila melanogaster	50	gro	FBgn0001139	FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963	2	5	5	103	3R	21870081	21870172	CGCCATTATGTTATGTACTACG		59	21870236	21870254	AGTAGCTGGTTGATCAGTG		58	NA	
Drosophila melanogaster	50	Eip93F	FBgn0013948	FBtr0112874,FBtr0084169	2	2	2	131	3R	17821484	17821569	GAAGATTCTGAGAACAACCA		57	17821663	17821681	GTTAACACAGAAGTTGCAC		57	NA	
Drosophila melanogaster	50	Gr93b	FBgn0045470	FBtr0084160	2	1	1	60	3R	17668306	17668324	ACTGACCCTGTTCTTTCTC		58	17668264	17668284	GCCGTACTGTACTAGAAAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sur-8	FBgn0038504	FBtr0083447,FBtr0083448	3	2	2	149	3R	13224765	13224783	GACCAGGATGTCATCAAGG		59	13224396	13224416	ACCGATCTTATTGCTGTACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14333	FBgn0038500	FBtr0083434	1	1	1	121	3R	13210387	13210405	TTGCGAATCATTTCAGCAG		59	13210490	13210508	GAACTTGTTGATCAGCTCG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31116	FBgn0051116	FBtr0082528,FBtr0082526	1	2	5	107	3R	7624475	7624582	TTATGCTGCAAGTAAACCCT		59	7624202	7624223	GTGATTGCTTTGAACTATCTCC		59	NA	
Drosophila melanogaster	50	Ugt35b	FBgn0026314	FBtr0082375	3	1	1	60	3R	6995383	6995402	CATATCCACCTTTGGAACTG		58	6995342	6995360	TAGAGGAGATTCATTGCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9636	FBgn0037556	FBtr0081805,FBtr0081804	1	2	3	103	3R	4068191	4068210	GACAATAAGATCGTATCGCT		57	4068005	4068126	CTACTGCTAGGTTGAATCTG		57	NA	
Drosophila melanogaster	50	CG15594	FBgn0037421	FBtr0078604,FBtr0078603	1	2	2	60	3R	2113814	2113834	TACAACCATCGCTATAACGAG		59	2113853	2113874	GAGGATTCGGTTTGTAATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199	1	14	15	114	3R	1100031	1100465	GAGCACAACGTATTTGGTG		59	1099935	1099953	AATGGAACACCTTGAAGCT		59	NA	
Drosophila melanogaster	50	Nep2	FBgn0027570	FBtr0078891	2	1	1	80	3R	549287	549306	TAGCATGGACTACATCATCG		59	549092	549246	GACTGGTCCAGATCTATAAGC		59	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113339,FBtr0078898,FBtr0078902,FBtr0113341,FBtr0078899,FBtr0078901,FBtr0113340,FBtr0078897,FBtr0078900,FBtr0113338	3	10	15	217	3R	110087	110105	TAGCTAAGCAGATGGTTGG		59	120999	121298	GATGTTGTACTTATCGCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG9449	FBgn0036875	FBtr0074980,FBtr0110902	3	2	2	76	3L	19487943	19487964	GTAAATGAGACCTACTATCCCT		58	19487490	19487509	GTACCAATGTTGAACAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	GNBP1	FBgn0040323	FBtr0075050	1	1	1	80	3L	18670117	18670136	AACCTTTGCCTTTCAATACG		59	18670176	18670261	AGTAGTAGGAGTGGTACTATCC		59	NA	
Drosophila melanogaster	50	CG13063	FBgn0036601	FBtr0075366	2	1	1	154	3L	16299876	16299894	AGTCTCCTCTGGTTTATGC		58	16300012	16300030	GATGTCCTCCACTACATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5946	FBgn0036211	FBtr0110869,FBtr0110868	3	2	4	70	3L	11811201	11811219	GATCTGGTACACAGTCGAC		59	11810714	11810733	TCATATCATCGTTCACGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11658	FBgn0036196	FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127	2	5	5	89	3L	11694639	11694657	AACAAGGGTATTGCCAGTC		59	11694506	11694586	CTGGCTGTCATTTACATGC		59	NA	
Drosophila melanogaster	50	CG6175	FBgn0036152	FBtr0076183	2	1	1	138	3L	11284161	11284180	GAATTACTGCAACATCAGCG		59	11282659	11282677	GTGGTTGTACGTTAGGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34356	FBgn0085385	FBtr0112566	1	1	1	80	3L	9939057	9939075	CAAGGAGACCATAACGGAG		59	9939118	9939249	TAGATTTGTAGTATCCGCGG		59	NA	
Drosophila melanogaster	50	CG7387	FBgn0035852	FBtr0076723	1	1	1	60	3L	8185999	8186017	ATTGTTTGGAGTTGGATCG		58	8185957	8185975	ATCATCCGCATACAGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32271	FBgn0052271	FBtr0073105	3	1	1	64	3L	3202674	3202692	CAAAGTGTCCACCATTGAG		58	3202628	3202647	CAGAGACCTTGATCAGATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13561	FBgn0034906	FBtr0072243	2	1	1	83	2R	19692102	19692123	CATCCCTTCATTAACATCATCC		58	19691979	19692058	CAACACTATTTCCGGTGGA		59	NA	
Drosophila melanogaster	50	CG5174	FBgn0034345	FBtr0086688,FBtr0086685,FBtr0086684,FBtr0086689,FBtr0086687,FBtr0086690,FBtr0086686	2	7	7	274	2R	14311632	14311651	ATAATACAGCCAACCTGTCG		59	14311962	14311980	CTTGAGGTTCTTAAGGCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34196	FBgn0085225	FBtr0112389	1	1	1	60	2R	13997581	13997600	CCATTCCCATGGACTATGAC		59	13997621	13997641	CGAAATAAGGCTGGATAATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hbs	FBgn0029082	FBtr0087414,FBtr0087413	2	2	2	129	2R	10924646	10924866	TTTGACTGTCCTGTATGCT		58	10924959	10924977	TATGGACCAGCTAATTCGG		58	NA	
Drosophila melanogaster	50	CG34233	FBgn0085262	FBtr0112427	2	1	1	153	2R	8170328	8170346	CTGATAAGTAGCTGGCGAC		59	8171425	8171443	CATAAATTCCACGTGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13185	FBgn0033661	FBtr0113072	1	1	2	91	2R	7765780	7765853	CAAAGTAACTACAGAGGCAC		58	7765708	7765728	CCTCGATGATCTTACCTAGAG		58	NA	
Drosophila melanogaster	50	CG30035	FBgn0050035	FBtr0088073	3	1	2	109	2R	7558674	7560228	ATTTGGACACAGGTCTTGG		59	7560301	7560319	ATATTCCGATCGGTCATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	TpnC47D	FBgn0010423	FBtr0088184	3	1	1	132	2R	7162451	7162469	ATATCCTCCGTCTTATGGG		57	7162279	7162297	TCTACGATGAACTTGGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414	1	10	10	69	2R	5991854	5991872	TGTCGACAGTCGATAAGGA		59	5991904	5992230	TCATCGTAACGTTCTGACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1371	FBgn0033482	FBtr0088428	2	1	1	111	2R	5962379	5962397	CTCTTTGGTAGTCTCAGGA		57	5962136	5962304	TGGCACTAAAGATTGTCCT		58	NA	
Drosophila melanogaster	50	CG2264	FBgn0033478	FBtr0088400,FBtr0088399,FBtr0088401,FBtr0088402	2	4	5	153	2R	5948857	5949128	GAGTTTCACAACCGTAGTG		58	5949244	5949263	AGTGTGGATTAACTCCAGTG		59	NA	
Drosophila melanogaster	50	Rad51C	FBgn0033389	FBtr0088585	2	1	1	87	2R	5053968	5053986	TCAGTGCTGACAGAATTGG		59	5054034	5054142	TCATCACCACAACTATATTCCC		59	NA	
Drosophila melanogaster	50	Phax	FBgn0033380	FBtr0088568	2	1	2	106	2R	5002591	5002610	ACACATTCTGGACTTAAACG		58	5002678	5002752	CGACTCGAACAAGTAATTCG		59	NA	
Drosophila melanogaster	50	Src42A	FBgn0004603	FBtr0085968,FBtr0085967	2	2	2	81	2R	1896789	1896807	TACGGTTAAGCATTATCGC		57	1896852	1896937	CTGAAGGGTTCTGAATGTC		57	NA	
Drosophila melanogaster	50	Fas3	FBgn0000636	FBtr0112805	2	1	4	86	2L	18387308	18388391	CAAACGAAACTCAAATCGAC		57	18388440	18388458	CATTGGGTGTTTCCAAGAG		58	NA	Nonspecific
Drosophila melanogaster	50	Ugt36Ba	FBgn0040262	FBtr0080909	2	1	1	60	2L	16795129	16795148	CTCCAATGTCAAGAGTTCCA		59	16795169	16795189	CAGGACCTTAAAGATGATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	crol	FBgn0020309	FBtr0080260,FBtr0080263,FBtr0080261	1	3	4	149	2L	11797737	11797843	TGAAACCGATCATAATTCCC		57	11797607	11797625	CATTATGTGAGATGAGCGT		57	NA	
Drosophila melanogaster	50	CG33129	FBgn0053129	FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172	3	4	4	118	2L	10966083	10966101	GATCAAGACCACCTGTGAC		59	10965901	10966002	ATTGGTCAATGAACTTTGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	nrv2	FBgn0015777	FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382	1	5	5	84	2L	6791573	6791591	TTTGATCTGGTACAAGGGC		59	6791313	6791525	TACTTTGTACACCGCAAGG		59	NA	
Drosophila melanogaster	50	CG11015	FBgn0031830	FBtr0079288	3	1	1	286	2L	6558501	6558519	GACATGAAGGTCTTCAAGC		58	6559115	6559134	TATTTGGACAGCTAAGTGGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Cyp28d2	FBgn0031688	FBtr0079061	2	1	1	84	2L	5207745	5207764	GATCTATGCAACCGATTTCC		58	5207872	5207890	GTTGCCCAATATCATGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7337	FBgn0031374	FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012	2	5	5	130	2L	1937464	1937482	CACAATACGGAGAATGGGA		59	1937575	1938518	CTATGGCCTACATTCTCCAG		59	NA	
Drosophila melanogaster	50	CG6540	FBgn0030943	FBtr0074601	3	1	1	110	X	18542383	18542401	CAACCAGACCCAGTATCTG		59	18542472	18542552	GTGGCGAAACTTATATTAGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp5D	FBgn0029837	FBtr0114466,FBtr0070888	1	2	2	137	X	5964737	5964899	CCTGGTATTGTACTTTATGCTG		58	5964621	5964639	TTATAATGCCGCTCGATCC		59	NA	
Drosophila melanogaster	50	CG10802	FBgn0029664	FBtr0070568	2	1	1	123	X	3377106	3377186	TCCTGAAGGAGTTCAAGAC		58	3377273	3377291	AATAGTATCGTGTCCTCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2712	FBgn0024975	FBtr0070488	3	1	1	137	X	2627431	2627449	GAAATCAGCACAGACTTCG		58	2627618	2627638	TGCATATGGTACTTGAAGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14805	FBgn0023514	FBtr0070312	3	1	1	81	X	1772160	1772178	CTAGGGTGTATGTTGGCTC		59	1772222	1772298	AGGTGATATTCCTTCATGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13360	FBgn0025620	FBtr0070147	1	1	1	100	X	682698	682716	TCACTGTGCTTAATCATGG		57	682552	682634	GAAATCCACGAATATGGCA		57	NA	
Drosophila melanogaster	50	Gcn2	FBgn0019990	FBtr0085787	3	1	1	135	3R	27223214	27223233	CTTCTAGAACTTCTGAGCGG		59	27223331	27223402	GGTCCGAGTTACACTTGTC		59	NA	
Drosophila melanogaster	50	CG5902	FBgn0039136	FBtr0084501,FBtr0084502	1	2	2	191	3R	19812925	19813001	AGTAGCAGAAGACGATTAGAG		58	19813154	19813172	TTGTTGTAGTGGGAGTTGG		59	NA	InUTR
Drosophila melanogaster	50	RpS3	FBgn0002622	FBtr0084410	2	1	1	67	3R	19185337	19185355	CAACGACTATGTCGAGACC		59	19185386	19185404	TGACCTTGATACCAAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cby	FBgn0067317	FBtr0084136	2	1	1	85	3R	17693874	17694045	CTTCAAGCAGTTGTTTGCA		59	17694094	17694112	CTATATTGCAACGTCCCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14709	FBgn0025701	FBtr0082411	3	1	1	80	3R	7399573	7399658	CTTATCGTACTGGGTGGAC		59	7399700	7399720	GCGGCAAAGTAATACATATCC		59	NA	
Drosophila melanogaster	50	Prat	FBgn0004901	FBtr0081764	2	1	1	60	3R	3736865	3736883	AGGTACATACGACACATGG		58	3736823	3736841	TCGTTGTTAACAAGCTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Alh	FBgn0037471	FBtr0081613,FBtr0113199,FBtr0081612,FBtr0081614,FBtr0081615	2	5	6	159	3R	2926921	2926942	CAACTTGAAGATCAGCTATGAG		58	2925169	2925187	GACCAAGGGAGATGTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Psn	FBgn0019947	FBtr0078192,FBtr0078193,FBtr0114517	2	3	3	80	3L	20426898	20426919	GTGTTCATTAAATACCTGCCTG		59	20426959	20427050	AAGGACAGCAATAAGATCCC		59	NA	
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075011	1	1	11	101	3L	19294145	19294163	TGAGTGTCTCTTTGTGCAG		59	19294010	19294081	TTAAAGGGTAGACAATCGGC		59	NA	
Drosophila melanogaster	50	ftz-f1	FBgn0001078	FBtr0075086,FBtr0075087	3	2	2	88	3L	18747722	18748241	AAATTGTGCTTCGATTCTGG		59	18747589	18747607	AATTCACGAATCATCGGTG		58	NA	
Drosophila melanogaster	50	Su(P)	FBgn0004465	FBtr0075359	3	1	1	131	3L	16604094	16604112	AGGAACACGAAATTCATGG		58	16603919	16603999	AAACCATTTACCGATGCTG		58	NA	
Drosophila melanogaster	50	CG15005	FBgn0035508	FBtr0073255	3	1	1	60	3L	4202045	4202064	CCTCCAGTTATGATCAACCT		58	4202004	4202022	GATGTTGGAGGATGTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Teh3	FBgn0040697	FBtr0073257	3	1	1	79	3L	4183947	4183965	CATCAATGCCGAAACTCTG		59	4183886	4183904	GCCTGATGAAGTAACACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13902	FBgn0035166	FBtr0072595	2	1	1	115	3L	840958	841048	CTTCAAGAGCACTAGTCCC		59	840861	840879	GATAATCCATTAGGGCGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30178	FBgn0050178	FBtr0072159	1	1	1	70	2R	19874352	19874371	TGGTGGTTGATCCTAAACTG		59	19874404	19874422	CTTGTCCAGATAGCACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp12d1-d	FBgn0053503	FBtr0089418	2	1	1	87	2R	7012516	7012534	ATCTTTATGCAACCCAGGG		59	7012383	7012465	GGATTTCCTTAATGCGCTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG8027	FBgn0033392	FBtr0088609	3	1	1	92	2R	5093028	5093047	AAACTGCACAAGAAATCTGG		58	5092898	5092973	GGCAAATTAGAGTCCTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gli	FBgn0001987	FBtr0080769,FBtr0080766,FBtr0080765,FBtr0080768,FBtr0080767	2	5	5	92	2L	15758071	15758151	GCTAGATATGGCAATCCGA		58	15757997	15758017	GGTATTGATGTTCAAGTACCG		58	NA	
Drosophila melanogaster	50	CG34164	FBgn0085193	FBtr0112355	1	1	1	75	2L	12057122	12057140	TAAATGAGTTTCTGTGCGC		58	12057246	12057264	TTGTACGAGACGGATACCT		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	hgo	FBgn0040211	FBtr0080201	1	1	1	101	2L	11137692	11137776	GATGTAAAGGACTTCCAGGT		59	11137840	11137858	ATAGTTACCATGCCAAGCC		59	NA	
Drosophila melanogaster	50	CG31718	FBgn0051718	FBtr0080015	3	1	1	118	2L	10407547	10407565	AACGAGATCTGTGATCTGC		59	10407647	10407860	TGGGCATTACACATAGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31694	FBgn0051694	FBtr0077685	3	1	1	98	2L	2871046	2871065	CTAACACTTATACCTTCGGG		57	2870896	2870914	TGTAGATTGCAAGAGACCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	net	FBgn0002931	FBtr0078162	2	1	1	60	2L	84053	84071	ACTCCCAACTCTAAATCCA		57	84011	84030	GACCAGTTGCATTCATACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11374	FBgn0031214	FBtr0114507	2	1	1	60	2L	77477	77498	TAAGTATCAAATGAGGCCAGAG		59	77519	77537	AAGCTTGATATCTCCACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mt:tRNA:K	FBgn0013697	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-U3344b	FBgn0086048	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me18S-G1358b	FBgn0086054	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-A2634a	FBgn0082946	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me5.8S-G74	FBgn0086066	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30506	FBgn0050506	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snmRNA:430:CR33739	FBgn0053739	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	stnB	FBgn0016975	FBtr0111138,FBtr0111137	1	2	2	81	X	22386913	22387148	ACCATCAAATTTCAACCACC		58	22386851	22386869	GAAGTTCACGATTCTTGGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG41473	FBgn0084033	FBtr0111204	3	1	1	119	X	22120157	22120175	TCACGTTGTTTATGCTGAG		58	22120258	22120276	TTATATCCTCGCTCTGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17450	FBgn0040028	FBtr0070057	1	1	2	252	X	21478404	21478545	GAACATGAATCGCAACCTC		59	21478170	21478188	GATGTGCAGTGGTATCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	sol	FBgn0003464	FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676	1	4	4	80	X	21228148	21228166	AGAGCTACAATGTGGTGTC		59	21228209	21228297	CGATGATTACTTGTCTCTGC		58	NA	
Drosophila melanogaster	50	CG1801	FBgn0031171	FBtr0077231	3	1	1	80	X	21179300	21179321	CAGCCATGGATTCTATCTAGAG		59	21179168	21179259	TCCTTACGCAAATTCTCCT		58	NA	
Drosophila melanogaster	50	CG34120	FBgn0083956	FBtr0110827,FBtr0110826	2	2	2	75	X	21003954	21003972	ATCGGTTCGACATCATACG		59	21004250	21004268	TAGTTCATTCGTCGTTCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Syx16	FBgn0031106	FBtr0077330	3	1	1	161	X	20264589	20264607	GAATCACTACGACGATCGG		59	20264310	20264391	GGCTTGATCTTAGACATGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	para	FBgn0003036	FBtr0111022	2	1	3	175	X	16375502	16375520	GTACATCTGCCACAAAGAC		58	16374822	16375364	TTAATTAGCGACAGCATGAC		58	NA	
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	2	7	7	82	X	15717700	15717788	GATCCATTGCTTGAGACTG		58	15717832	15717852	TCGTAGAGATCTTTAAGTCCC		58	NA	
Drosophila melanogaster	50	Paf-AHalpha	FBgn0025809	FBtr0074191,FBtr0074190	1	2	2	60	X	15678437	15678456	AAATCTAACCAATGCTGGAG		57	15678396	15678416	TTGAGAAAGCAGATCGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0168	FBgn0027287	FBtr0074042,FBtr0074043	2	2	2	204	X	15403948	15403966	AAGGTGGGACTCAATAAGC		59	15404195	15404213	ATGTCACTCCATCCATCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9164	FBgn0030634	FBtr0074012,FBtr0074014	1	2	3	74	X	15276618	15276636	CATGAACAACATACCCGGA		59	15276372	15276581	CTATGAAAGCTGGGAAACTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	gce	FBgn0030627	FBtr0074004	1	1	1	80	X	15210002	15210162	GCAATGATATCATTCTGACTGG		59	15210203	15210221	GTGTATTGGCATCGATCAG		58	NA	
Drosophila melanogaster	50	Flo-2	FBgn0024753	FBtr0073954,FBtr0073952,FBtr0073950,FBtr0073953,FBtr0073951,FBtr0073949	1	6	6	77	X	14825993	14826012	ATATTGTACTCGAATCGCTG		57	14826114	14826132	TTAGGACAATCTCATCGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG32614	FBgn0052614	FBtr0073867	1	1	1	60	X	14026099	14026120	CTTTAACATCAAGATGCTAGCG		59	14026139	14026159	CATGTCAACCTCATTTGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11068	FBgn0030536	FBtr0073854	1	1	1	60	X	13849934	13849953	AAGTTGTCCCGTCTAAAGAC		59	13849974	13849994	CCAATAGATTGTCGTACTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15754	FBgn0030492	FBtr0073782	2	1	1	112	X	13422921	13422939	GGTTGAGGGCTTCTATGTC		59	13423015	13423103	TCAGAAACTCAACTGGACG		59	NA	
Drosophila melanogaster	50	CG34324	FBgn0085353	FBtr0112526	2	1	1	205	X	13350951	13350969	ACAATCCAGTTGCTATTGC		58	13350764	13350782	ACAGTTGTTGACGGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sno	FBgn0005410	FBtr0112848	3	1	4	93	X	13094934	13096787	CTTTATTGGCGCAGATGAG		58	13094859	13094878	TTCTGATTATTCCCGACTCC		58	NA	
Drosophila melanogaster	50	l(1)G0237	FBgn0027259	FBtr0073541	3	1	1	67	X	11465883	11465903	CAATATGGACGATCACTACCT		59	11465836	11465856	CCATATTCTGGTGTATAGCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32666	FBgn0052666	FBtr0073507,FBtr0073508	1	2	2	124	X	11445270	11445288	GACCTTCCTCAACATCTCG		59	11445376	11445818	CATTCATGCGATCGTTTGG		59	NA	
Drosophila melanogaster	50	Atg8a	FBgn0052672	FBtr0071498	2	1	1	61	X	10659672	10659690	TTGTGAACAACGTCATTCC		58	10659560	10659647	GTGATGTTCCTGGTACAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1468	FBgn0030157	FBtr0071388	2	1	1	60	X	9773041	9773059	ACAGAAGCACCAGATACAG		58	9773083	9773101	CAGAGTCCTCTTCATTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34449	FBgn0085478	FBtr0112753	3	1	3	85	X	9227649	9230970	GCTTTACAGTAAGCTATCGC		58	9227583	9227601	GTTCACAGTCCTGACTCTG		59	NA	
Drosophila melanogaster	50	CG12065	FBgn0030052	FBtr0071215,FBtr0071214	3	2	4	95	X	8480265	8480589	ATACACCACAGTCGATTCC		59	8481296	8481315	CCCAGAGTATACACATTCGA		58	NA	
Drosophila melanogaster	50	Trxr-1	FBgn0020653	FBtr0071168,FBtr0071167,FBtr0071169	1	3	3	61	X	8140427	8140445	ACATCAAGTCCGTCAACTG		59	8140468	8140558	GATGTACTCCACTTTCTTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG12689	FBgn0029952	FBtr0071081	2	1	1	61	X	7479777	7479798	GATACGAATAGTTGAACACCAG		58	7479737	7479755	AGTTCACAGGTCTTTGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11368	FBgn0040923	FBtr0071058	1	1	1	203	X	7346266	7346284	CAAGATGCATCTGAACCTG		58	7346525	7346543	ATTTAACCGGTAGATGCAG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	iav	FBgn0086693	FBtr0070969	2	1	1	107	X	6710342	6710360	TCCTCTACAAGGGACATCC		59	6710427	6710507	GATCGGGATAGTTATAATCACCC		59	NA	
Drosophila melanogaster	50	RpL7A	FBgn0014026	FBtr0070915,FBtr0070916,FBtr0070917	1	3	3	84	X	6425868	6425886	CGATGTTGATCCTCTGGAG		59	6425399	6425417	CTTACCCTTCACAATGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6067	FBgn0029828	FBtr0070864	1	1	1	120	X	5851296	5851314	TCACTAGCTGCATCTTCAG		59	5851467	5851485	GTCACTCCGAATACGAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12236	FBgn0029822	FBtr0070826	1	1	2	237	X	5803807	5803825	GAAATACTCACCGAGTCCG		59	5804088	5804477	TATTGGGCGAATCATTCGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	norpA	FBgn0004625	FBtr0100671,FBtr0100670	1	2	4	89	X	4247570	4247588	TGACGATCTGTTCGAACAC		59	4247641	4247989	CATCTAGCCAGATCTTGGC		59	NA	
Drosophila melanogaster	50	CG32776	FBgn0052776	FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630	3	4	4	89	X	3791673	3795151	CCTGAGTCTCGATGATGAC		59	3791602	3791621	GCGGGATGATCAATAATCTC		58	NA	
Drosophila melanogaster	50	CG2947	FBgn0029676	FBtr0100247,FBtr0070598,FBtr0070597	1	3	3	80	X	3685382	3685400	ATGTCTGATATACTGGGCG		58	3685518	3685536	GATGTTACCCGGATTTGAC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG2875	FBgn0029672	FBtr0070586,FBtr0070587	2	2	2	67	X	3466639	3466657	ACTTTCTCATGGACTCCCT		59	3466528	3466546	AAAGATTCCCTGAAGAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514	3	9	14	87	X	3215172	3215190	CGTTTCTATATCGCTCCGA		59	3215240	3219968	TCTTTAAACCTTTCGCTAGC		58	NA	
Drosophila melanogaster	50	CG32795	FBgn0040384	FBtr0070492,FBtr0070491,FBtr0070493	1	3	3	89	X	2679095	2679113	CACAAGATGACCTTGAAGC		58	2678712	2679044	CAGGATTATCTGCAAATAGCG		59	NA	
Drosophila melanogaster	50	ptr	FBgn0003159	FBtr0070404,FBtr0070403,FBtr0070402	1	3	3	89	X	2243030	2243048	GAGTAAGCTCTTGTCCCTC		59	2242892	2242910	TACACCTGACTAGCATCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	sta	FBgn0003517	FBtr0070291	1	1	3	60	X	1376969	1376988	GAGGTTATGTCCACTAACCA		58	1376928	1376946	AACGTGGAAAGAGTTACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3655	FBgn0040397	FBtr0070181,FBtr0113327	1	2	2	131	X	970325	970475	CAATCTTCAGGTCCATCCC		59	970212	970230	GTTAGGTAAAGGTGCTGGA		58	NA	
Drosophila melanogaster	50	CDC45L	FBgn0026143	FBtr0070182	3	1	1	60	X	923239	923257	AGGAGTTCTTCTCGATGGT		59	923197	923217	TAAACTATGTCCGCTATGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TRAM	FBgn0040340	FBtr0070168,FBtr0070167,FBtr0070169	1	3	3	60	X	830597	830615	ATATGGCAAGCCATACACC		59	830639	830657	GTAGAAGAATATCGCGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12467	FBgn0025623	FBtr0112912,FBtr0112913	2	2	2	101	X	712956	712974	CACCTAACTGTCGTTTCTG		58	712815	712891	CAGAACACAGTTAGGATCG		57	NA	
Drosophila melanogaster	50	CG4293	FBgn0024983	FBtr0100476	1	1	4	176	X	423557	423676	GTAAGCTGAAACATGACGG		58	423341	423359	CGTGTAAACCAGGTAAACG		58	NA	InUTR
Drosophila melanogaster	50	CR41607	FBgn0085817	FBtr0114275	1	1	1	60	U	4305913	4305931	TCTCGAATCTATGGGTGGT		59	4305955	4305973	AACCAGACAAATCACTCCA		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41556	FBgn0085687	FBtr0114136	1	1	1	60	U	4985661	4985680	GTTATGGTTTGTGCAGATCG		59	4985701	4985721	CGTGTTATCTGAAGAAATGCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41246	FBgn0085572	FBtr0114015	2	1	1	100	U	1570112	1571136	TATTCGCAAATTGGGTTCC		58	1570030	1570048	CTGGCCTATAGGTAATGGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG41041	FBgn0069966	FBtr0114295	1	1	1	71	U	403048	403066	GTATGGGACAACTCTTCCA		58	402995	403013	TTCTGTTAACTCAGGGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pncr013:4	FBgn0041005	FBtr0091952	2	1	1	60	4	488578	488596	GAAGACGTCTACCATTCAC		57	488619	488638	CAGATTATCCACCCTTACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0100344,FBtr0100346,FBtr0100343,FBtr0089327	1	4	7	95	4	1129117	1129138	CCGTTAGTTCCTATTAGTATGC		58	1129194	1129748	GTCAAATGCTAGAGCTGTG		58	NA	
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0089226,FBtr0089223	3	2	5	194	4	1043035	1043053	GATGATGTCCTCTTTGCTG		58	1040633	1042878	TTGCAGTTTCGTTAGAACAC		58	NA	
Drosophila melanogaster	50	CaMKI	FBgn0016126	FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089063,FBtr0089065	2	7	7	120	4	473264	473285	CCCTATTGGGATGAAATTAGTG		58	473365	473442	CATTTCCAGAAATCCAAGCA		58	NA	
Drosophila melanogaster	50	pncr002:3R	FBgn0063127	FBtr0091948	2	1	1	60	3R	2525501	2525521	TCCAAGAACTAAGAGCTAAGG		58	2525461	2525479	TACCAATAGGTGTTCTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gammaCop	FBgn0028968	FBtr0085794,FBtr0085793	2	2	2	106	3R	27400822	27400840	TGCCGTCAACACTATAGTC		59	27400910	27400986	TGAAGGTTCCTGAACAGAG		58	NA	
Drosophila melanogaster	50	Prosalpha3T	FBgn0039819	FBtr0085738	1	1	1	60	3R	26948798	26948816	TCAGTTCAACTTCGGTGAG		59	26948756	26948774	GATATCGCAAAGGTTCGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12071	FBgn0039808	FBtr0085717	2	1	2	132	3R	26704772	26704870	GCCCTATATTTGTGAAGTGTG		59	26704660	26704678	CTTCACCATGTTGTTCAGC		59	NA	
Drosophila melanogaster	50	PH4alphaSG1	FBgn0051014	FBtr0085686	3	1	1	94	3R	26329653	26329671	TACAATCTGCACAGTTCCA		58	26329523	26329595	AACCACTCATTGCAAATCC		58	NA	
Drosophila melanogaster	50	CG15530	FBgn0039752	FBtr0085568	3	1	2	89	3R	26005341	26005359	AATCGCAAGGTTAATCCGA		59	26005410	26005495	GAATCTACGCTTTCTTCACAG		59	NA	InUTR
Drosophila melanogaster	50	CG31033	FBgn0039705	FBtr0085530,FBtr0085529,FBtr0085528	1	3	3	80	3R	25653846	25653866	CATATGCTCTGTAAGAGACGA		59	25653707	25653804	TGTTCGTTTGTAAACGTGG		58	NA	
Drosophila melanogaster	50	Ef1gamma	FBgn0029176	FBtr0085392	2	1	2	147	3R	25046022	25046162	GTGAAAGGAACTCTGTACAC		58	25046272	25046290	GGAACTTCTTGAGGAACTC		57	NA	
Drosophila melanogaster	50	CG33346	FBgn0053346	FBtr0085306	1	1	1	60	3R	24495783	24495804	CAGCAATTGGAAGATAGTTGAG		59	24495825	24495843	GCAGACATTTAGCACATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wdb	FBgn0027492	FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206	3	7	7	131	3R	23392424	23392442	AAATTCTTAGGACTGCGGG		59	23392247	23392330	GAATCCGTTGATGATACTGC		58	NA	
Drosophila melanogaster	50	CG6066	FBgn0039488	FBtr0085131	2	1	1	60	3R	22941723	22941743	TGAAGGGTTCTTACATAGGAC		58	22941683	22941701	TTCTTGTGCTTTCTCTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31080	FBgn0051080	FBtr0085032	1	1	1	73	3R	22459633	22459651	TATAACTACCAGCCTGCAG		58	22459688	22459706	GAAGGAGAGTAACTGGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31093	FBgn0051093	FBtr0084917	2	1	1	68	3R	21615954	21615972	ATCTCTGGCTAGAAATGGA		57	21615904	21615922	GTAGCTACTGGAATGTCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	jigr1	FBgn0039350	FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887	3	6	6	98	3R	21474749	21474768	GTACGATAGGTCAAACAAGC		58	21474829	21474919	CTTATACTGGTGGCATCGT		59	NA	
Drosophila melanogaster	50	CG4673	FBgn0039348	FBtr0084893,FBtr0084892	1	2	2	80	3R	21448136	21448154	CGATCAATATTCAGCCGGA		59	21448014	21448094	TCCAACCAATCTTCTTCAGTC		59	NA	
Drosophila melanogaster	50	CG31105	FBgn0051105	FBtr0084731	2	1	1	80	3R	20683515	20683594	TGGTTCGAAGTATTCAGTACC		59	20683455	20683474	GAGTATCTCGAATATGGCCA		58	NA	
Drosophila melanogaster	50	CG7006	FBgn0039233	FBtr0084704	2	1	1	79	3R	20676463	20676481	CAAGATCTTGTTCGAGCAC		58	20676575	20676593	AATATGTTCCATCTGGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10170	FBgn0039085	FBtr0084420	2	1	1	60	3R	19359330	19359349	ATATGTGATCGAACAACCTC		57	19359289	19359307	GAATAGCCGAGTATTGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4624	FBgn0039058	FBtr0084401	3	1	1	60	3R	18983989	18984007	CAAGAAGAATGTGCAGACC		58	18983947	18983967	AATGAACGAGTAGAAGATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34376	FBgn0085405	FBtr0112609	1	1	2	269	3R	18283136	18283154	AACGAACTGTATATGCCCA		58	18285751	18285769	GTTGGTCACGATTATGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	3	22	22	87	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202451	17202547	TTGTTCAGGAATACGATAGC		57	NA	
Drosophila melanogaster	50	CG17298	FBgn0038879	FBtr0084056	2	1	1	154	3R	17109002	17109317	CAAAGTACTGTTCGTGCTC		58	17109435	17109515	GATGAACAACATGGGAGTG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31207	FBgn0051207	FBtr0084044	1	1	1	60	3R	16872077	16872098	TTGAAGATATACGAGCTAACCC		59	16871974	16871992	TGTCTAGCCAGAATACCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17270	FBgn0038828	FBtr0083994	2	1	1	60	3R	16643045	16643065	TAACTTCTACGTGATCTTCCC		58	16642911	16642930	ATAGATGAGGCCCAGTAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5191	FBgn0038803	FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905	1	5	5	101	3R	16396364	16396823	GTCGACAGGTAAATCCTCTG		59	16396887	16396905	TAATGCCCATCGCTATCAC		59	NA	InUTR
Drosophila melanogaster	50	att-ORFB	FBgn0067782	FBtr0090034	3	1	1	135	3R	16379404	16379422	CTTCACCAAGATCTGGGTG		59	16379031	16379306	CACTTCATAGTATTCCCGCT		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	mira	FBgn0021776	FBtr0083847,FBtr0083848	3	2	2	62	3R	15758837	15758855	ACTACCAGCTGACTTTGAC		59	15758793	15758811	TCTTTAGACGCTCCATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4572	FBgn0038738	FBtr0083861,FBtr0083860,FBtr0083862	2	3	3	60	3R	15688809	15688827	GTGGGCAATAAGACATTCC		58	15688767	15688785	TCTTCAAGTGAAGTTCCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7718	FBgn0038649	FBtr0083682	1	1	1	60	3R	14570960	14570978	ATGAAGGTCTACCTGTTCG		58	14570918	14570936	AGTCATTGGACAGATTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14302	FBgn0038647	FBtr0083673	1	1	1	181	3R	14558519	14558537	CTGTTTAGCCTCTGTCTGG		59	14558682	14558700	TAGATGGTCGACGTTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083641,FBtr0083643,FBtr0083645	1	3	13	90	3R	14340833	14340851	GAACATCGAAACGGATGTG		59	14261500	14340779	GTCAGTGTTGTACCTAGGG		58	NA	
Drosophila melanogaster	50	koko	FBgn0051232	FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629	2	5	5	155	3R	14229544	14229623	TACGATGAGTTCCTCATTGC		59	14229741	14229759	CATCGACCAGTACTCATCG		59	NA	
Drosophila melanogaster	50	Rim	FBgn0053547	FBtr0091514	2	1	1	82	3R	13715372	13715390	ACATCGATGGAATGACTCC		59	13713257	13715326	TAGATCGAGCTCTAGCAGG		59	NA	
Drosophila melanogaster	50	CG5255	FBgn0038485	FBtr0083406	1	1	1	60	3R	12964441	12964460	CACTCACCTAAGTCTATCCA		57	12964483	12964501	AGCAATCATTTCCTCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Abd-B	FBgn0000015	FBtr0083382,FBtr0083385,FBtr0083384,FBtr0083381,FBtr0083383	2	5	5	121	3R	12755453	12755471	GTACTCGAAGTTCCAGACC		59	12755293	12755368	ATATCTTGACCTGTCGCTC		58	NA	
Drosophila melanogaster	50	CG14906	FBgn0015351	FBtr0112880,FBtr0083355	1	2	2	60	3R	12475850	12475868	CCCACTTCACTTCAATTGG		58	12475808	12475827	ACTTCATATAGCCTTTCGTC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100331	3	1	8	143	3R	12122933	12122951	TATTTGCGTTATGTACGGC		58	12123057	12123187	CTATGTCTCCATTGTCTTCC		57	NA	
Drosophila melanogaster	50	pnr	FBgn0003117	FBtr0083220,FBtr0083221	2	2	2	128	3R	11865150	11865168	CATTCAGACCAGGAAACGA		59	11865260	11865346	GGTTTGAGATCATGCTCCT		59	NA	
Drosophila melanogaster	50	CG9632	FBgn0038377	FBtr0083185,FBtr0083186	1	2	2	67	3R	11686256	11686274	AAGAAGCTCAAGAGAAGGC		59	11686305	11686323	TCAATATCGGTCGGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sra-1	FBgn0038320	FBtr0083085	2	1	1	87	3R	11161917	11161935	CAGAATAACACTGCACGTC		58	11161986	11162065	TCGAATGAAACGATTCGTG		58	NA	
Drosophila melanogaster	50	Hsc70-4	FBgn0001219	FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056	2	6	6	71	3R	11071531	11071549	GGTATCCTCAACGTGACTG		59	11071584	11071602	CTTGTCGTTGGTAATGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082802,FBtr0082801,FBtr0082806	1	3	8	95	3R	9488692	9488710	ATCATCCTCTCGTTATGGC		58	9488769	9491188	TAATCCTTGAGATCCTGCC		58	NA	
Drosophila melanogaster	50	CG12360	FBgn0038111	FBtr0082718,FBtr0082717	3	2	3	80	3R	8855690	8855708	CGACAACACTTTCTACGAC		58	8854594	8855646	CTGATAAGGCTCTCATTGC		57	NA	
Drosophila melanogaster	50	Csk	FBgn0086903	FBtr0082447,FBtr0082446,FBtr0082444,FBtr0082448,FBtr0082445	3	5	5	85	3R	7460836	7460854	AAATCAGACATGTGGAGCT		58	7460708	7460787	TCGGCTAATGGAATTCTGG		59	NA	
Drosophila melanogaster	50	CG17187	FBgn0037882	FBtr0082365	3	1	1	109	3R	7057384	7057404	GAATCTTTACGATCTTCTGGG		58	7057295	7057313	GATTGTCCGGATTCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nocturnin	FBgn0037872	FBtr0113220,FBtr0113218,FBtr0113219	3	3	3	96	3R	7032963	7033087	ACATCCTATCACAAACTCTCG		59	7033145	7033163	TGGACAATCAGGTACTTGC		59	NA	
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0100455,FBtr0082254,FBtr0082255,FBtr0100454,FBtr0082253,FBtr0082256	3	6	6	93	3R	6417178	6419287	GAAGTCGACTCACTGATGG		59	6411623	6411644	GACAGAAGTTATCGCATAACTC		58	NA	
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190	2	8	8	80	3R	5954404	5954423	ATCTCCAGGGATTACTTGAG		58	5954229	5954361	TTCATGAACCGGATAGGTC		58	NA	
Drosophila melanogaster	50	CG12947	FBgn0037753	FBtr0113213	3	1	2	102	3R	5608195	5608275	CGACTATCTTACAGAGTACCTG		59	5608338	5608356	CACATTCGGAAAGCAATCC		59	NA	
Drosophila melanogaster	50	unc-115	FBgn0037733	FBtr0082095,FBtr0082094	2	2	4	61	3R	5515793	5516164	TTAGCGAGATGTACATCCG		58	5515750	5515771	GCTAGAGGAATAAAGTGAACCA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Kap-alpha3	FBgn0027338	FBtr0082108,FBtr0082106,FBtr0082107	3	3	3	158	3R	5402864	5402942	GAAAGACCAGGATGAAATGC		59	5402725	5402743	TTCTTCAGGTCAATGGACG		59	NA	
Drosophila melanogaster	50	Aats-trp	FBgn0010803	FBtr0081981,FBtr0081980	1	2	2	70	3R	5091868	5091886	TTCGATGTCAACAAGACGT		59	5091758	5091776	TTCTGATACATGGCAGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11986	FBgn0037656	FBtr0081967	3	1	1	194	3R	4841805	4841823	GACAAGAATACATGGTCGC		58	4841981	4842065	CAGCCAATCATTCATCTGC		59	NA	
Drosophila melanogaster	50	mRpS18A	FBgn0051450	FBtr0081897	3	1	1	63	3R	4388185	4388203	AGGACAGTACGAAGTACCA		59	4388140	4388159	TTATTTGCCTTGGCATTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp85a	FBgn0037589	FBtr0081849	3	1	1	234	3R	4246003	4246021	CCGGAAATTCAACTTTGCC		59	4245730	4245748	GAGAGTGAATCGTCTTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	stck	FBgn0020249	FBtr0081845,FBtr0081846,FBtr0081844	2	3	3	221	3R	4184861	4184937	GCTAACGATATGAACGAACTG		59	4185120	4185138	CTGATGATAGTGCGTCTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	eIF4AIII	FBgn0037573	FBtr0081834	1	1	1	91	3R	4139539	4139557	ATTGGACTACGGTCAACAC		59	4139612	4139685	TCTTGATGGCTCTTGTTCG		59	NA	
Drosophila melanogaster	50	Tom34	FBgn0010812	FBtr0081788	3	1	1	133	3R	3860479	3860500	GACGAATACATTAAGGACAAGC		59	3860594	3860671	TGCAGTATTCCTTCTCTGG		58	NA	
Drosophila melanogaster	50	CG34023	FBgn0054023	FBtr0100078	3	1	1	63	3R	3246248	3246266	CTATTCCCGAGTGGTATGC		59	3246292	3246311	TTAATGCCATTTGAGGTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31493	FBgn0051493	FBtr0081566	2	1	1	78	3R	2957689	2957707	GAAAGTGGCAGAATTGTGG		59	2957809	2957828	CGCAAATGTCGTAGTATGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Alh	FBgn0037471	FBtr0113199	2	1	6	87	3R	2922537	2922621	ATTTGGGAATGAGACACGT		59	2922468	2922486	CTACTGGCAGTTAAGCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Rheb	FBgn0041191	FBtr0078693,FBtr0078694	1	2	2	80	3R	1395126	1395144	ATCGTCGCTATGCATACAG		59	1395187	1395309	ATCTTGGTGAAGGTGTTCTC		59	NA	
Drosophila melanogaster	50	Itp-r83A	FBgn0010051	FBtr0078686	1	1	2	92	3R	1356982	1357000	TAAGACTTACGAAGACGCT		58	1357055	1357390	CACCTTCGGAATCAATATCC		58	NA	
Drosophila melanogaster	50	tacc	FBgn0026620	FBtr0089955,FBtr0089953,FBtr0089952,FBtr0089954	1	4	7	82	3R	570241	570259	AAAGTTTGGAGGTCTTCCC		59	569896	570197	TCAGTTGAGTATCCATATCGG		58	NA	
Drosophila melanogaster	50	CR34262	FBgn0085291	FBtr0112457	3	1	1	103	3L	21953026	21953044	GATCTTTCCCACAAACGTG		59	21953111	21953190	AATACTTGGCCAGTAGAGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG32453	FBgn0052453	FBtr0078521	1	1	1	69	3L	22690358	22690376	ATTCGCTCTACTTCTCAGC		59	22690409	22690427	TGTAGATGTGCTGCTACTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7172	FBgn0037102	FBtr0078377	1	1	1	60	3L	21561688	21561706	CGAGAAGTACCAGAGACAG		58	21561646	21561664	CTTGGGATTCACATTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mkrn1	FBgn0029152	FBtr0078383,FBtr0078384	2	2	2	69	3L	21524869	21524890	CAGAGCCAGAATGAAATAATCG		59	21524637	21524656	GATAATCTCGCCGATCTACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	skd	FBgn0003415	FBtr0078328,FBtr0112830,FBtr0078329	3	3	3	80	3L	20989472	20989491	TCTAACATTCGAGGAAGAGG		58	20989352	20989429	CTGTCCATATGAGTGTCCC		59	NA	
Drosophila melanogaster	50	CG12984	FBgn0037042	FBtr0078286	2	1	1	61	3L	20985086	20985104	GGTATCAGGGACAACACTG		59	20985126	20985147	GTTTCATCGTCCAAGAATATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13253	FBgn0037015	FBtr0113182,FBtr0113183	3	2	2	65	3L	20706706	20706793	CAAGAACCTAGAGGACTGC		59	20706659	20706678	TCATCGAATTCCTGTTCGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Deaf1	FBgn0013799	FBtr0100666,FBtr0074882	2	2	2	220	3L	19812918	19812936	AAGTACAAGGACAAGTGGC		59	19821426	19821444	GGTGTAAAGAGACGGACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8765	FBgn0036900	FBtr0089598,FBtr0089597	3	2	2	123	3L	19678982	19679066	AGAAGTCGGTGAAACAGTG		59	19678877	19678897	GAATTATAGTGCTTCCAACGC		59	NA	
Drosophila melanogaster	50	CG32206	FBgn0052206	FBtr0089795,FBtr0089796	2	2	2	83	3L	19374588	19378509	GACATTGTGCAGATTATCTTCG		59	19374526	19374544	TTCGTAACCATCCACATCC		59	NA	
Drosophila melanogaster	50	fz2	FBgn0016797	FBtr0112890,FBtr0075028	1	2	3	218	3L	19153742	19153760	AATCAACCAGATAGCAGCA		58	19139397	19139415	TTAGCTTAGTTCGGTTGTG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14082	FBgn0036851	FBtr0075031,FBtr0114620	3	2	2	178	3L	19101292	19101310	CTGTACTGTGATACCCTGC		59	19101132	19101150	GACAAATTGGGTGATCCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7842	FBgn0036691	FBtr0075278	3	1	1	85	3L	17029623	17029641	CACTCCTCTAATGCAAAGC		58	17029690	17029708	AGTACACTCTAATGACGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lasp	FBgn0063485	FBtr0100145	1	1	2	119	3L	16674000	16674018	CAAACAGAACACGAAGCAC		59	16673020	16673918	TATTCCGATTCATTGCTGCT		59	NA	
Drosophila melanogaster	50	CG18814	FBgn0042137	FBtr0075385	2	1	1	114	3L	16363479	16363498	TAGTGAACATTTCCTCGGTG		59	16363575	16363648	TAATGGATGGGACTAGCCA		59	NA	
Drosophila melanogaster	50	CG4998	FBgn0036612	FBtr0075377	3	1	2	148	3L	16335187	16335205	CAATGCTACCACTACTGCT		59	16336894	16336912	GGTTTCCATAATAGGCACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4962	FBgn0036597	FBtr0075471	2	1	1	70	3L	16288358	16288376	CCGATCATCAAGAGCTACG		59	16288306	16288324	TTGTAGGTGTTGGCATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5027	FBgn0036579	FBtr0075457	2	1	1	166	3L	16222732	16222807	AAGGAGTTCAAGGTTCGTG		59	16222936	16222955	TTTAGCATGTCCACACTCTC		59	NA	
Drosophila melanogaster	50	CG32150	FBgn0052150	FBtr0075535	3	1	2	104	3L	15832750	15832951	GCAATAATCCGAAAGATGGC		59	15832665	15832683	CATAGCACCGCTCTATTCC		59	NA	
Drosophila melanogaster	50	Dcp2	FBgn0036534	FBtr0100528,FBtr0075539,FBtr0075538	2	3	4	86	3L	15815230	15815248	GGTACTGTATCCTCGAAGC		59	15815103	15815181	GCTGACAATCTTCTCATTGC		59	NA	
Drosophila melanogaster	50	Tfb2	FBgn0036513	FBtr0075595	1	1	1	60	3L	15572245	15572263	GGGAATTAGAGCGAAATCG		58	15572203	15572222	GAGAGGAACTGATTGTACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16979	FBgn0036512	FBtr0075563	2	1	1	60	3L	15571018	15571036	TGCTAAATACCCACATCGG		59	15571059	15571078	ACTAAGTACTCTTTGCCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7427	FBgn0036510	FBtr0075561	3	1	1	62	3L	15557501	15557519	ATCCGGAGTACTATTACCG		57	15557545	15557563	GATAGCGCATGAATAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33985	FBgn0053985	FBtr0100030	1	1	1	60	3L	15519473	15519494	GCCTGCTATAGAGATTATTGTG		58	15519434	15519454	GATACGACTCTGATTATCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12355	FBgn0040805	FBtr0075606,FBtr0113333	2	2	2	176	3L	15486579	15486599	ACGCCTTATCTATTGACTGTG		59	15486285	15486303	ATAGATGACACGGAATCGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13457	FBgn0036482	FBtr0075654,FBtr0075653	1	2	2	76	3L	15121463	15121481	TTATACGGGACCTAGCTCC		59	15121300	15121318	CATCATCGTAGGTGGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17177	FBgn0036440	FBtr0075710	2	1	1	60	3L	14692257	14692278	TCACTGCTACTTGTGATATCTG		59	14692218	14692236	TATTTCCGTAGTCATGCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hml	FBgn0029167	FBtr0075753	3	1	1	80	3L	13839971	13839989	GTCGTCGATAAGGAGAACG		59	13840033	13840131	GTATCGTGCACTAACTGCT		59	NA	
Drosophila melanogaster	50	CG10154	FBgn0036361	FBtr0075854	3	1	1	100	3L	13429170	13429330	TAACTGCACGATTGATGCT		59	13429088	13429107	AGAAGTGAGTTCCCATAAGG		58	NA	
Drosophila melanogaster	50	Ptp69D	FBgn0014007	FBtr0075914	2	1	2	149	3L	12731787	12731878	CTAAGAGATTCTTTGAGGGCA		59	12731989	12732007	GTCAGTGTCCTTATGTCGG		59	NA	
Drosophila melanogaster	50	CG5620	FBgn0036268	FBtr0076012,FBtr0076013	2	2	2	86	3L	12208895	12209529	AAAGCAAATAGAGGTGCCA		59	12208827	12208845	GTTTGTCCTTTGACCAGGA		59	NA	
Drosophila melanogaster	50	thoc6	FBgn0036263	FBtr0076019	2	1	1	153	3L	12185711	12185730	AAGTTGCATATCCTCAAGGA		58	12185508	12185595	GAATATGCTCGGTTTCCCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	nol	FBgn0014368	FBtr0076214	3	1	1	181	3L	11124057	11124075	ACTGATCCGACTACTCCTC		59	11124220	11124238	CTTCCTTTCTTGGAGGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mnf	FBgn0036134	FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228	3	5	5	145	3L	11108508	11108591	CAGTACAGTAGTGGCAGTC		59	11108381	11108399	ACATGGTTCCTCTTTAGCG		59	NA	
Drosophila melanogaster	50	CG32062	FBgn0052062	FBtr0113420	2	1	5	127	3L	10575215	10580743	GGAGTGTATACTATGATCCCT		57	10580986	10582464	AGCAGTGGCATTTAATATGG		58	NA	
Drosophila melanogaster	50	CG32043	FBgn0052043	FBtr0114368	1	1	4	94	3L	9463530	9463670	ACGGAAATCTACACGAAGG		59	9463728	9463746	AGATTCCACTTACCAGCTG		58	NA	
Drosophila melanogaster	50	TrpA1	FBgn0035934	FBtr0113155	1	1	2	147	3L	8890172	8890190	AATTGCAAGAAGGACTCGA		59	8889438	8889633	TTACCATGGTGTTCACCAC		59	NA	
Drosophila melanogaster	50	CG13311	FBgn0035929	FBtr0076589	1	1	1	60	3L	8795040	8795059	TGAATGAAACGCACTATAGC		58	8794999	8795017	CACTGAAGGACCTGATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13667	FBgn0035890	FBtr0076610,FBtr0076611	2	2	2	60	3L	8399338	8399356	CGATGTACTCGATGTTCAG		57	8399380	8399398	AAGGTCGAAGAATGTTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7942	FBgn0035838	FBtr0076686	2	1	2	108	3L	8115189	8115207	GTACCTGGATATGTGCTCC		59	8115334	8115352	CTCCTGCAGGTAATTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33275	FBgn0035802	FBtr0089850	3	1	3	182	3L	7596896	7596915	ACATTTATCCCGTCTACTGG		58	7597060	7609223	GATGCCATAACCAGGACTC		59	NA	
Drosophila melanogaster	50	msl-3	FBgn0002775	FBtr0076926	2	1	2	192	3L	7118286	7118421	GGTGCTAAACGTCTTTGAG		58	7118046	7118130	GTAGTCACCACGAATTTGC		59	NA	
Drosophila melanogaster	50	CG8647	FBgn0035729	FBtr0076902	3	1	1	70	3L	7006275	7006293	CAATACCACTCTGGTCACC		59	7006326	7006345	GGCCAATATACAGAGTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	G-ialpha65A	FBgn0001104	FBtr0076934	3	1	1	86	3L	6966749	6966767	TGTTCCTCAACAAGAAGGA		58	6966625	6966699	TGTTGGTTCCTGTGTACTC		59	NA	
Drosophila melanogaster	50	Pole2	FBgn0035644	FBtr0077081	2	1	1	60	3L	5890460	5890478	TGGATGTGGATTTACTGCC		59	5890418	5890437	AATCCACATAGCTTGAAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sucb	FBgn0029118	FBtr0077135	3	1	2	177	3L	5556421	5556439	GTATGGAGTGGCCATACAG		59	5556181	5556200	ATACTTGGTGGTGATATGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG34391	FBgn0085420	FBtr0112634	3	1	1	80	3L	5430868	5432302	CAGGGAGAACAATATCATACC		57	5432344	5432362	TTCTTCATGGCATATCCCA		58	NA	
Drosophila melanogaster	50	CG7509	FBgn0035575	FBtr0073362	2	1	1	99	3L	4803911	4803985	CGGATAAGTCATATAGATGGC		57	4803832	4803850	ATAGATCAGCTGGAATGCT		58	NA	
Drosophila melanogaster	50	CG32244	FBgn0052244	FBtr0073325,FBtr0073324	3	2	2	104	3L	4505470	4505488	TGCTATCTTCTCAACAGCG		59	4505293	4505402	CAAACATCATGCGAACCTG		59	NA	
Drosophila melanogaster	50	DopEcR	FBgn0035538	FBtr0100185	2	1	3	192	3L	4379581	4379933	CAATTCTTGCCTGTTGCAG		59	4371891	4379425	CTAATTGTGCGCATCTGAG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	ago	FBgn0041171	FBtr0073246,FBtr0073247,FBtr0073245	1	3	3	99	3L	4247723	4247741	AATTGTGGGACGTTAAGAC		57	4247576	4247660	GTGTCGTTTGCTCTAATCC		58	NA	
Drosophila melanogaster	50	CG11593	FBgn0035488	FBtr0114509	2	1	1	83	3L	4038740	4038821	CTTAAACGGTGTTATCAGCTG		59	4038677	4038695	TATCCAGAATGTCGGATGC		59	NA	
Drosophila melanogaster	50	enc	FBgn0004875	FBtr0073153	1	1	4	228	3L	3832330	3832348	TATCACTATGAGCCCAGAG		57	3832540	3832616	CTGATTGATGAAAGACGCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	PHGPx	FBgn0035438	FBtr0073068,FBtr0073066,FBtr0073067	3	3	4	214	3L	3328064	3328082	CTGGTGATCCTCAACTTCC		59	3328326	3328345	GTGAAGTTCCACTTGATTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12016	FBgn0035436	FBtr0073063,FBtr0073064	2	2	2	60	3L	3321318	3321337	GGATTCATGATCTTCAACCA		57	3321358	3321378	GGAAGTGGTACTTAATGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1291	FBgn0035401	FBtr0073023	3	1	1	64	3L	3145174	3145192	TTCTCTTTCCAAGCATTCG		58	3145217	3145238	CTGGAGATAGGAACAAGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-pro	FBgn0027082	FBtr0072948	1	1	1	69	3L	2650953	2651029	TTTCGTTAAGGTGAATGCC		58	2650902	2650923	CGATACATAATGGTATTCGTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Pxn	FBgn0011828	FBtr0072950,FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951	1	5	5	146	3L	2611834	2611853	GAACAATAATCGGCTAAGCC		59	2611549	2611649	TACATGATCAGGCGATTCAG		59	NA	
Drosophila melanogaster	50	dos	FBgn0016794	FBtr0072926,FBtr0072927	3	2	2	94	3L	2594380	2594399	TAACCAATAAACTGGGTGCA		59	2594456	2594530	ATTGCCCAACTTATAGGCA		58	NA	
Drosophila melanogaster	50	DmsR-2	FBgn0035329	FBtr0113126,FBtr0072885	2	2	2	60	3L	2299266	2299774	AAAGCTGAGTGACCTTATGG		59	2299797	2299815	CAGGATGAAGTTGATGCTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG9018	FBgn0035318	FBtr0072909	1	1	2	194	3L	2236070	2236088	CTGGAGGATAAGGACAAGG		58	2235817	2235835	TGAAGAACGTACATCGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	zormin	FBgn0052311	FBtr0110858,FBtr0110856	2	2	4	135	3L	2125346	2125364	ATGTTAGCAGGGAGATCAG		58	2124604	2125249	CATTTGGTTCCGTATTGAGAG		59	NA	
Drosophila melanogaster	50	CG12025	FBgn0035285	FBtr0072834	1	1	1	60	3L	1867415	1867434	TATCACGTCGTGTACATCTG		59	1867457	1867475	GGTGATAGAAGTCGAACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2211	FBgn0035211	FBtr0072723	3	1	1	192	3L	1333847	1333866	GGAGCGTTCAAATCTTACTC		58	1333618	1333693	GGGAATGTAATCAAGATGCA		57	NA	
Drosophila melanogaster	50	CG9153	FBgn0035207	FBtr0072671,FBtr0072670	3	2	2	89	3L	1317536	1317555	GTGGGAAATGAGGATTACGA		59	1317604	1317680	CCATTTGATTGTATCATCGACC		59	NA	
Drosophila melanogaster	50	CG33965	FBgn0053965	FBtr0100006	1	1	1	81	3L	1233637	1233710	AATCAAGGAGAGGGTTTCC		58	1233753	1233773	GTACTCCTCAGGAAGATAGTG		58	NA	
Drosophila melanogaster	50	bab1	FBgn0004870	FBtr0072643	3	1	2	64	3L	1099101	1099119	GATCCGAGAGGAAGAAAGG		59	1079627	1079646	GTTATGTACTTACGTTGGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Glut1	FBgn0025593	FBtr0112911,FBtr0072617,FBtr0072616,FBtr0112909	3	4	6	81	3L	982228	982246	CCTGCATCTCTATGGTCTG		59	982289	983866	GTCGATCATTTCCTTGATCAG		58	NA	
Drosophila melanogaster	50	CkIIalpha-i3	FBgn0025676	FBtr0072604,FBtr0072603	2	2	2	80	3L	709486	709566	TGTAAGCTTGCAACAAAGC		59	709424	709442	GGACGATTCTTAGTCAGCT		58	NA	
Drosophila melanogaster	50	5SrRNA:CR33385	FBgn0053385	FBtr0086377	1	1	1	62	2R	15641896	15641914	AATACATCGGTTCTCGTCC		59	15641852	15641870	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30424	FBgn0050424	FBtr0113375,FBtr0113377,FBtr0113376	1	3	3	97	2R	20853307	20853382	ACTTCGGGAATTCAGTCAC		59	20853228	20853246	TTGAAGTGGTCTTCAGTCC		59	NA	
Drosophila melanogaster	50	CG13588	FBgn0035038	FBtr0072319	2	1	1	127	2R	20496801	20496882	CTACAACCCGAATAAGAATGAC		58	20496968	20496988	CGTCATCTAGAATGCTAATGG		58	NA	
Drosophila melanogaster	50	CG13581	FBgn0035014	FBtr0072300	3	1	1	66	2R	20394520	20394538	TAAGGCCATCTATTTCCGC		59	20394568	20394586	GAAGCTGGAGAAGTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nop60B	FBgn0023184	FBtr0072258,FBtr0100213	2	2	2	235	2R	20064130	20064148	ATCAAGCGAGTGATCATGG		59	20064347	20064426	CTTAACTTGCGTTTGCTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13565	FBgn0034935	FBtr0072209	2	1	1	122	2R	19835170	19835888	ATATCTTTGTGAAGCTGGCT		59	19834792	19834810	TACTTCGTCTTGAACTCCG		59	NA	
Drosophila melanogaster	50	CG11299	FBgn0034897	FBtr0113114,FBtr0113113,FBtr0072087	3	3	3	112	2R	19619396	19619414	CATTTACCAGGACTTTGCC		58	19619490	19619573	CATCGTTGTACAATCCGTC		58	NA	
Drosophila melanogaster	50	Pde8	FBgn0034886	FBtr0072075	1	1	5	180	2R	19563345	19563363	AGATGGACTTCATAGCCAC		58	19563505	19564584	GCCGAACAATTCTCTTTAGTG		59	NA	
Drosophila melanogaster	50	retn	FBgn0004795	FBtr0072072,FBtr0072073	3	2	2	98	2R	19538521	19538539	TATCAACAAGAAGCTGTGG		57	19538601	19538969	TACTTCATGTATTGGGTGC		57	NA	
Drosophila melanogaster	50	eIF2B-delta	FBgn0034858	FBtr0072014,FBtr0072015,FBtr0072013	1	3	3	76	2R	19275710	19275728	CAAGAACCAACTGACACAG		58	19275824	19275842	TATCGATGAAGTGGACGAG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG3800	FBgn0034802	FBtr0071994	3	1	1	138	2R	18823623	18823641	GACACATCTCCAAGAACTG		57	18823503	18823521	TACATTTATGAGGTGCCAC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Oatp58Dc	FBgn0034716	FBtr0113105,FBtr0071777	2	2	2	81	2R	18113473	18113491	TCGCTATACTACACGTTGG		58	18112904	18113429	ATGAAAGACTCAACAAAGCC		58	NA	
Drosophila melanogaster	50	lox2	FBgn0034660	FBtr0071745	3	1	1	88	2R	17677625	17677643	GCATCTTTCTGTTTGGAGG		58	17677500	17677573	ATGGAAATGCCCTGATCTC		59	NA	
Drosophila melanogaster	50	CG9143	FBgn0034496	FBtr0086304	2	1	1	155	2R	16163906	16163986	CTACAATGACGAATCTGGC		58	16163769	16163787	CTGTTGGGATACTTGAAGC		58	NA	
Drosophila melanogaster	50	Obp56d	FBgn0034470	FBtr0086477	1	1	1	60	2R	15591018	15591036	AAACGGCAATTTCGATGAC		59	15590976	15590994	CTCCAAGAAACAATTGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp56c	FBgn0046879	FBtr0086478	2	1	2	80	2R	15588127	15588147	GCGACTACAATAATGACAACG		59	15587986	15588004	TCTCATACAGACAGCTCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15124	FBgn0034461	FBtr0086470	1	1	1	60	2R	15530548	15530566	TAACGACAATATGCTCGAC		57	15530589	15530608	AGTTATGTTCGGTAAGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494	3	7	7	68	2R	15418201	15419688	TATTGAGGGTAAAGGCACC		58	15418151	15418169	TTCATGCTCTTGGATGAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494	2	7	7	152	2R	15418202	15419689	CTATTGAGGGTAAAGGCAC		57	15418068	15418087	CTCAATTGTAGATGTCCACC		57	NA	
Drosophila melanogaster	50	CG30127	FBgn0050127	FBtr0086556	3	1	1	102	2R	15216060	15216078	GACCGATGCACAATATGAC		58	15215762	15215780	TCAGTGGACGTGTTAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Jheh2	FBgn0034405	FBtr0089970	1	1	2	127	2R	14744417	14744435	TCTTCGAGGTTATTGCACC		59	14744116	14744134	CTTATCGAATCCCACTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)03709	FBgn0010551	FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616	1	6	6	191	2R	14707870	14707888	GATGATCAACATCTCGCTG		58	14708043	14708123	ATGAGTAGGGATACCTGCT		59	NA	
Drosophila melanogaster	50	CG15068	FBgn0040733	FBtr0086727	1	1	1	60	2R	14277927	14277946	ATGTGATTATAAACGGCGAC		58	14277886	14277905	ATTTCCACATTCTAATCGCC		58	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	sbb	FBgn0010575	FBtr0086765	1	1	3	84	2R	14170886	14170904	AACTAATGGGTGGATTGCC		59	14170734	14170838	AGTACACCCGCTTTAAGTG		59	NA	
Drosophila melanogaster	50	CG6435	FBgn0034165	FBtr0087045	1	1	1	211	2R	12761771	12761789	TTGCCTAGACTGTCTATGC		58	12762020	12762039	ACATATAATTCTGCACCGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nox	FBgn0085428	FBtr0112650	1	1	1	80	2R	12202783	12202801	GATCAACTGGTAGCTCCAC		59	12202843	12202953	GGCCATCGATAAATATCTCCA		59	NA	
Drosophila melanogaster	50	CG15701	FBgn0034095	FBtr0087131	3	1	1	156	2R	12120368	12120476	TACAAGGAAGTTCAGTACGC		59	12120594	12120613	GATAGCTCCTCAGATCACAG		59	NA	
Drosophila melanogaster	50	CG8435	FBgn0034084	FBtr0087249	3	1	1	169	2R	12057719	12057738	CAGTGGACTACAACACTCTG		59	12057509	12057530	CTTGATCTCCTCAATGATTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Asph	FBgn0034075	FBtr0087218,FBtr0087221	2	2	4	89	2R	12000754	12001291	CCAAATACAACTGAGGATGAG		58	12001342	12001360	ATCATCCGGTATGTGATCC		58	NA	
Drosophila melanogaster	50	Asph	FBgn0034075	FBtr0087220,FBtr0087219	3	2	4	273	2R	12000137	12000155	AAGAATCAGTAGAGCCGGA		59	12000466	12002286	GGCTTTATTTGTGATGCCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	1	5	7	80	2R	11836644	11836723	CATTTGCTACGTGCTACTC		58	11836582	11836603	GCTCTAGTTATATTCGAGAAGG		57	NA	
Drosophila melanogaster	50	CG34123	FBgn0083959	FBtr0114580,FBtr0110832,FBtr0114579,FBtr0110831,FBtr0110833,FBtr0113485	3	6	6	80	2R	11165813	11166764	GAACAAGAATCTGATTACCGTC		59	11165754	11165773	GTTAGGATGGTCTGATCCAG		59	NA	
Drosophila melanogaster	50	CG8093	FBgn0033999	FBtr0087401	2	1	1	60	2R	11102560	11102580	GTCCTTTACTGGACAAATGTG		59	11102520	11102538	ATGTGGTTCCTTGAGAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13340	FBgn0033868	FBtr0087649	2	1	1	61	2R	9666285	9666303	GACAGAAGACGTATCTGCC		59	9666242	9666260	CTTCACTCCCGTGTTAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6016	FBgn0033844	FBtr0087700	1	1	2	80	2R	9378988	9379008	GCTCAGTTCTCAATTATAGCC		58	9377367	9378946	CACGATTGGTATCTTGGTG		58	NA	
Drosophila melanogaster	50	CG34439	FBgn0085468	FBtr0112740	1	1	2	85	2R	9046597	9047045	TACAAGATGAACGGTCTGG		58	9047094	9047112	GCACTTAAGCTTAAACGGA		58	NA	InUTR
Drosophila melanogaster	50	CG8632	FBgn0033762	FBtr0087844	2	1	2	98	2R	8541556	8541626	CCAGCAGATCTATGACTCC		58	8541688	8541706	TTGTCGAGCATTACTTTGG		58	NA	
Drosophila melanogaster	50	Cpr49Ab	FBgn0050042	FBtr0087914	2	1	1	98	2R	8266534	8266606	CACTATCTTTGGGAAACTGAG		58	8266666	8266684	GTAGAATCCCTTGGAACGA		58	NA	
Drosophila melanogaster	50	garz	FBgn0033714	FBtr0087898,FBtr0087897	1	2	2	80	2R	8216834	8216852	AATTTGCGTGGTCTAAACG		59	8216896	8216978	CTCTTCGTTCTTGATTGCA		58	NA	
Drosophila melanogaster	50	CG8858	FBgn0033698	FBtr0088008	2	1	1	123	2R	8083928	8084002	CAAGAGAAGTGAATCCAATCTC		58	8083826	8083847	CTCCGATACATCTTTCAAAGTG		59	NA	
Drosophila melanogaster	50	E(Pc)	FBgn0000581	FBtr0088139,FBtr0088140	2	2	2	93	2R	7344228	7344316	GTTTACCTACCGACTCGAC		59	7344373	7344391	ATTTAGCATCCGAACAAGC		58	NA	
Drosophila melanogaster	50	trsn	FBgn0033528	FBtr0088306	2	1	1	80	2R	6367095	6367176	GCAGTACTACAGATACTCCG		59	6367034	6367053	TCCAGGTAAATAACCAAGGC		59	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	1	9	9	149	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349137	6349157	GACAGCATCGAATACAAACTG		59	NA	
Drosophila melanogaster	50	CG34222	FBgn0085251	FBtr0112415	2	1	1	142	2R	6207801	6207819	TAGACAGAAATGCCGATCC		59	6207677	6207695	TGAAATAGCCGTTATTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CAP	FBgn0033504	FBtr0088342,FBtr0088347,FBtr0088341,FBtr0088338,FBtr0088340,FBtr0088343,FBtr0088339	2	7	10	83	2R	6182437	6182455	GTCATTCGTCTGTTTCCGA		59	6182825	6183262	TCGATTGTTCTAGATTCCCG		59	NA	
Drosophila melanogaster	50	CG2264	FBgn0033478	FBtr0088400,FBtr0088399,FBtr0088401,FBtr0088402	1	4	5	152	2R	5948857	5949128	GAGTTTCACAACCGTAGTG		58	5949244	5949262	GTGTGGATTAACTCCAGTG		57	NA	
Drosophila melanogaster	50	CG12128	FBgn0033473	FBtr0088393,FBtr0088394	3	2	2	60	2R	5914623	5914641	AAGGATAAGCCTAATCCGT		57	5914664	5914683	CATTCTCGAGAATTGAACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8029	FBgn0033393	FBtr0088587,FBtr0088588	3	2	2	242	2R	5095662	5095680	CAAGACCTACTACACCAGC		59	5095958	5095976	TACAGATAAGCCACCTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	ltd	FBgn0002567	FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934	1	5	5	108	2R	5066192	5066210	GGATGAGTATGTGAGGGAG		58	5066041	5066123	GATGAGTATCTTATTCACGAGG		57	NA	
Drosophila melanogaster	50	ltd	FBgn0002567	FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934	2	5	5	110	2R	5066194	5066212	ATGGATGAGTATGTGAGGG		58	5066041	5066123	GATGAGTATCTTATTCACGAGG		57	NA	
Drosophila melanogaster	50	CG8788	FBgn0028955	FBtr0088581	2	1	1	86	2R	5027791	5028948	ACTTCTACATCATGTGGCG		59	5028997	5029016	CTTTAGACACGGATCAGGAC		59	NA	InUTR
Drosophila melanogaster	50	sns	FBgn0024189	FBtr0111043,FBtr0088635	2	2	2	83	2R	4718008	4718027	CTATCATCTGTGACTCGAGC		59	4718072	4718386	TATTAATGCCTTCGATGGGT		58	NA	
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	1	9	9	90	2R	4568146	4568164	AGATCAAGACCTGCTTGTG		59	4568217	4568299	ATATCACGGTAGTCCATGAC		58	NA	
Drosophila melanogaster	50	CG14763	FBgn0033243	FBtr0088875	1	1	1	80	2R	3854502	3854575	CAACTACGACAGATATCGCT		59	3854441	3854460	AAGTTGACCATGGAGTAGAG		58	NA	
Drosophila melanogaster	50	CG30497	FBgn0050497	FBtr0088933,FBtr0088934,FBtr0088932	3	3	3	60	2R	3628352	3628370	CTTGCGTAACCATTTCTGG		59	3628310	3628330	ATGCATCAGGTACTGATACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr43a	FBgn0041243	FBtr0110820	3	1	2	182	2R	3279335	3279408	TCTTGCAGAGAACAATGCA		59	3279171	3279189	TTGAGGATTAGACTGCGTG		59	NA	
Drosophila melanogaster	50	Gr43a	FBgn0041243	FBtr0089014,FBtr0110820	1	2	2	123	2R	3279490	3279508	TTTACTTCATCCTCACGGG		58	3279330	3279403	CTGGTTGCATTGTTCTCTG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111064,FBtr0111057,FBtr0111100	2	3	60	83	2R	3247002	3247020	CACCTTAAGGGAAAGAGCA		59	3236471	3246958	CTTGTACCATCTAAAGAAAGGC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111080	3	1	60	80	2R	3243664	3243682	GACCGTATAAAGAGCTCGA		58	3236471	3243622	CTTGTACCATCTATAAACCGG		57	NA	
Drosophila melanogaster	50	coro	FBgn0033109	FBtr0086208,FBtr0086209,FBtr0086207	2	3	3	140	2R	2752071	2752154	TTCGGTATTTCGAGGTAACG		59	2751950	2751968	GATAGAACTTGGCGACCTC		59	NA	
Drosophila melanogaster	50	phtf	FBgn0028579	FBtr0086125	2	1	1	80	2R	2630263	2630352	AATAGTTGCATGGTACCAG		57	2630396	2630414	TCCAATATCCTCTGTTCGA		57	NA	
Drosophila melanogaster	50	Pld	FBgn0033075	FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997	2	6	6	80	2R	2141752	2142360	ACATTCAGGGTTACTTGGT		58	2142404	2142422	CCTCCTTACTAGTTCCAGG		58	NA	
Drosophila melanogaster	50	vlc	FBgn0010633	FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039	3	4	4	107	2R	1591797	1591817	CCAGATATCTCCGAAGATACC		58	1591885	1591956	ATTATTGTGGCAAAGACCCT		59	NA	
Drosophila melanogaster	50	CG30438	FBgn0050438	FBtr0086068,FBtr0086069,FBtr0086070	2	3	4	97	2R	1414858	1414876	GGACATCCTAATGGCTACG		59	1416315	1426767	AGGTAATATTGTGACCTCTGG		58	NA	
Drosophila melanogaster	50	CG30437	FBgn0050437	FBtr0086065	2	1	3	117	2R	1328563	1341069	TTAGTCGATGAAGTTGTGC		57	1341150	1341168	AGTATTCGGGAGGAATGTC		58	NA	
Drosophila melanogaster	50	d4	FBgn0033015	FBtr0111115	3	1	3	159	2R	1151493	1182137	AAAGTTTACACTCCCACCA		58	1182338	1182362	GAGTCCTTACTATCATTATCTCCTG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG41448	FBgn0084012	FBtr0111271	2	1	1	93	2R	562785	562803	AGCATACGAGTGAACAAGG		59	562710	562728	GAACTTCTCGACGTATCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snmRNA:158	FBgn0065104	FBtr0091750	1	1	1	60	2L	5206237	5206255	AGGATCACTCTACCCAAGG		59	5206279	5206297	GCTGCTATCCCATCTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33855	FBgn0053855	FBtr0091859	1	1	1	60	2L	21522068	21522087	GGTCAATGGAAAGCTTATCC		58	21522110	21522128	CGACAGTTTGAAAGATCCA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His2A:CG33832	FBgn0053832	FBtr0091836	1	1	1	60	2L	21483508	21483527	GAATTATTCCGCGTCATCTG		59	21483550	21483568	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31626	FBgn0051626	FBtr0081485	2	1	2	83	2L	21236687	21236706	CCCACATTCTTCAAGAAGTG		58	21233882	21233900	TGATCATTAACCCAGAGGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9246	FBgn0032925	FBtr0081472	2	1	1	60	2L	21164019	21164039	AGGAAGATACGGTAACTAAGG		58	21164061	21164079	TTGTGGTACTTCTCTTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10722	FBgn0032848	FBtr0081335,FBtr0081334	1	2	2	194	2L	20095930	20096011	AACTTCAGCGTTACAACGA		59	20096166	20096187	ACTATGTGTACACAATGTACCC		59	NA	InUTR
Drosophila melanogaster	50	CG10664	FBgn0032833	FBtr0081300,FBtr0081301	1	2	2	130	2L	19959683	19959761	ACATCTTCGTGTACGATGAG		59	19959854	19959872	CTTGTTCTCGTAGTCCCAC		59	NA	
Drosophila melanogaster	50	CdGAPr	FBgn0032821	FBtr0081318	3	1	1	100	2L	19779090	19779109	TTTCATCCAATGTACAGCAG		58	19778938	19779027	GTTGTTGATGTTCTGTCCC		58	NA	
Drosophila melanogaster	50	fon	FBgn0032773	FBtr0081222	2	1	2	128	2L	19385700	19386087	GATTTCCAACAAAGTTTGGG		57	19385285	19385303	AAAGCTACCGCTATAACCT		58	NA	
Drosophila melanogaster	50	CG17350	FBgn0032772	FBtr0081199	3	1	1	92	2L	19382122	19382206	CAAACGAAAGAGTCCAAGG		58	19382262	19382280	GATTTCGAACGTGATGTCC		58	NA	
Drosophila melanogaster	50	CG10602	FBgn0032721	FBtr0089314,FBtr0089315,FBtr0089317,FBtr0089316	3	4	4	106	2L	18856840	18856925	CTAAGGGAAGCCTTAACGT		58	18856752	18856771	CATATAAGGATGCTCCTTGC		58	NA	
Drosophila melanogaster	50	CG15147	FBgn0032654	FBtr0080988	2	1	1	86	2L	17626142	17626162	CCGTTATCGTCAAACTTATCG		59	17626076	17626094	TTAACCCTTGGCTGAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ApepP	FBgn0026150	FBtr0080956	1	1	1	60	2L	16909250	16909268	AGTCACGTAGAATTCAGGA		57	16909208	16909226	ACATCGTTCTTAATGGCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31805	FBgn0051805	FBtr0080958	1	1	1	72	2L	16898441	16898459	TACTGATGACTCTCCCGAG		59	16898280	16898298	TAAATGGGCGAGATTGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mdy	FBgn0004797	FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917	1	4	4	86	2L	16820786	16820804	ATAACGCCCTAATCCTGAG		58	16820919	16825419	CAATTATTTCCATGGCTAGACC		59	NA	
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080878,FBtr0080876	2	3	7	189	2L	16483963	16483982	GTCTGCATACGGTTTATACC		58	16481537	16483811	TTGATCGATAGGCATCTGG		58	NA	
Drosophila melanogaster	50	CG4455	FBgn0028506	FBtr0080836	1	1	1	60	2L	16353320	16353338	TATCTGGATAGTCGACCCG		59	16353362	16353380	TTACGGTGAAGATGATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13244	FBgn0032577	FBtr0080792	3	1	1	60	2L	15917294	15917313	ATTCTACAACTTTGTCTGCC		58	15917336	15917354	TACTTGTTCAGCATCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18420	FBgn0028866	FBtr0080687	3	1	1	80	2L	14796076	14796162	AATACCACAATCGTTGTTCG		58	14796015	14796034	GGTCCTATTCACTTGATGCT		59	NA	
Drosophila melanogaster	50	CG18095	FBgn0028872	FBtr0080606	1	1	1	113	2L	14029995	14030015	AATGTAGAGGGAATAGACTGC		58	14029844	14029920	ATAGGCAACAACACAATCG		58	NA	
Drosophila melanogaster	50	CG16885	FBgn0032538	FBtr0080559	3	1	2	185	2L	13933468	13933486	TCACCTATCCCGTTAAGGT		59	13932840	13932858	TTTGTAAGTCGTACGTTGG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG31845	FBgn0051845	FBtr0080533	1	1	1	138	2L	13777621	13777639	TGCAAACTTTGCGAATCAC		59	13777741	13777759	GAACTCTGTCAGGTAGCAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4970	FBgn0032364	FBtr0080239,FBtr0080240	1	2	2	60	2L	11519078	11519096	GATCATAAGGCAGCATGAC		58	11519177	11519195	AATCGCCTCAATCTCATCG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	mre11	FBgn0020270	FBtr0080213	3	1	1	60	2L	11284098	11284118	GATGTGACAGTCAGTAGTACG		59	11284207	11284225	TAAGGCTACTAAGGAGCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	RfC3	FBgn0032244	FBtr0080019	3	1	1	130	2L	10420337	10420410	TTATGAGACTTGAGCTGCC		59	10420504	10420522	AATAAAGAAGGCGGCTACC		59	NA	
Drosophila melanogaster	50	Cdk5alpha	FBgn0027491	FBtr0080063	3	1	1	89	2L	10308594	10308615	GGCAATGAAATCAGTTATCCAC		59	10308454	10308472	CTTGTTCACAATGACGAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Pka-C1	FBgn0000273	FBtr0079851,FBtr0079852	1	2	3	112	2L	9685193	9696199	TACATCAGCCATTTCCCTC		59	9685099	9685118	TTCAAATCGTCTTCCAAGTC		58	NA	InUTR
Drosophila melanogaster	50	CG12438	FBgn0032065	FBtr0079732	3	1	1	60	2L	8752954	8752972	CATCAGCTTCGAGTACCTG		59	8752995	8753014	GATATAGAGCACTATGGCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9314	FBgn0032061	FBtr0079731	1	1	1	60	2L	8706229	8706248	ATGTTCTGGGACTTCATGAC		59	8706271	8706289	TAAAGTACATGAGCAGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hnf4	FBgn0004914	FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846	1	4	4	99	2L	8688854	8688935	TCTTCTTCGATCCCAATGC		59	8688773	8688793	CGATCTGATATGTAGTCCTCG		59	NA	
Drosophila melanogaster	50	Glt	FBgn0001114	FBtr0079727,FBtr0079726,FBtr0079725	2	3	3	280	2L	8674101	8674119	ACCATCCATTAACCCATCC		59	8674363	8674774	GATCATAGATTCGCGACAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Aats-ala	FBgn0027094	FBtr0079721	3	1	2	257	2L	8380660	8380682	GATCTAACTACGATACCGATCTG		59	8380302	8380320	CATTCAACTTCTCAGTGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Snoo	FBgn0085450	FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718,FBtr0112720	3	5	5	61	2L	7975349	7975367	AGTTCGAGAATCACACCTG		59	7975306	7975324	ATGAAGATAGTCGTGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myo28B1	FBgn0040299	FBtr0079474,FBtr0079476,FBtr0079475,FBtr0079473	1	4	4	80	2L	7682041	7682116	TGGGACATATCTTCAAGATGG		59	7682155	7682176	GATTATCCTGGAACTCAATGTG		58	NA	
Drosophila melanogaster	50	Gr28a	FBgn0041247	FBtr0079463	1	1	1	139	2L	7452809	7452827	CCAGAACTCAGAGATCGAC		59	7452629	7452647	ATAATGAGGTAGCACGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13779	FBgn0040954	FBtr0079403	1	1	1	139	2L	7064272	7064290	CGAGGAAGAGCTAAATGTG		57	7064393	7064411	GTTAGGACTGAACAAAGGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	homer	FBgn0025777	FBtr0079307,FBtr0079306,FBtr0110778	1	3	3	101	2L	6721445	6721527	TGCTCTTCAGGAATCAACTG		59	6721363	6721381	CACAGCTGCTCCATATCTC		59	NA	
Drosophila melanogaster	50	Kr-h1	FBgn0028420	FBtr0079194,FBtr0079195	3	2	2	119	2L	6095045	6095063	CTAACTACGATGACACCCA		58	6095144	6095248	GTAGAGCGGATTCATATTTGG		58	NA	
Drosophila melanogaster	50	Gpdh	FBgn0001128	FBtr0079147,FBtr0079148,FBtr0079146	1	3	3	105	2L	5947159	5947245	GTCTGGAGGACAAATTCCC		59	5947314	5947332	ATATGCTCAGGGTGATTGC		59	NA	
Drosophila melanogaster	50	CG31915	FBgn0051915	FBtr0079099	1	1	1	60	2L	5529231	5529251	CATTATGGTCAATGAACTCGG		59	5529271	5529291	CTCCAAATGCTTGTAGTAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14023	FBgn0031698	FBtr0113022,FBtr0079081	1	2	2	154	2L	5323469	5323487	AGCAACATCAGCAAATGTC		59	5323216	5323351	GTTGTTGAAGCAATCAGGC		59	NA	Nonspecific
Drosophila melanogaster	50	Bsg25D	FBgn0000228	FBtr0079085,FBtr0079084	2	2	3	99	2L	5274074	5274092	GATTCCAAGGATGAAGCCA		59	5273565	5273583	ATGTTTCCGAAGTGGTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Bsg25D	FBgn0000228	FBtr0079083	2	1	3	145	2L	5275753	5276943	GAGTTCAGCAATTGGAGAC		58	5275626	5275644	CAATGCCTTAGTTAGCTGC		58	NA	
Drosophila melanogaster	50	qtc	FBgn0028572	FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260	3	5	7	122	2L	5068375	5068393	ACGAGTTGGAGAACATACG		59	5069211	5070106	GATAAATGGTCTTACGCGC		59	NA	
Drosophila melanogaster	50	CG17612	FBgn0031597	FBtr0077464,FBtr0077463	1	2	2	60	2L	4381618	4381636	GTCTTGAAGCCCATATGTG		58	4381576	4381594	GGCTCCAACTCTGATTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34176	FBgn0085205	FBtr0112367	2	1	1	196	2L	4004180	4004199	GACCCGTGATTAAGGTACAG		59	4004358	4004376	CTGTGGATTGTGGTAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31686	FBgn0051686	FBtr0077752	2	1	1	60	2L	2244994	2245012	ACAGTACCTTCATCTTCGT		57	2245034	2245054	TGAATGCCTTAGAAGTCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aop	FBgn0000097	FBtr0077851,FBtr0077850	1	2	2	124	2L	2159242	2159326	CTGAGCCCAATACAAATGG		58	2159136	2159154	GACGATCTTGAAGACTCCC		59	NA	
Drosophila melanogaster	50	CG18132	FBgn0031345	FBtr0077919	3	1	1	60	2L	1517316	1517335	CAAATTTGAGTGTGAAGGCA		59	1517275	1517293	AGCTTAAGTATCGTGCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	S	FBgn0003310	FBtr0077993,FBtr0077994	1	2	2	111	2L	1052484	1052575	TCCCAAAGAGATTACCATACAC		59	1052394	1052412	CATGATTGTGTAGAGCGGA		59	NA	
Drosophila melanogaster	50	CG15824	FBgn0031292	FBtr0078029	3	1	1	92	2L	884175	884265	GATACAGAAACACCAATCGTG		59	884103	884121	GCTGTATAACCAGCAGGAG		59	NA	
Drosophila melanogaster	50	PNUTS	FBgn0053526	FBtr0091486,FBtr0091489,FBtr0091487,FBtr0091488	3	4	4	65	2L	872029	872047	AACTCAGCACCTATTCTGG		58	872076	872221	TAGAATGCGTACACCTTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	dbe	FBgn0020305	FBtr0078030	3	1	1	67	2L	869541	869559	AGCTAGATTTGATGGAGGG		58	869492	869510	GATGATGTAGGGATCCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13694	FBgn0031219	FBtr0078160	1	1	1	60	2L	116000	116020	GCTATAACTACTACACAGCTC		57	115960	115979	TTTGAATTCTCATCACCGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-1854b	FBgn0083041	FBtr0113569	3	1	1	63	X	17039686	17039704	TGATCCTTACAGGGTTGTG		58	17039641	17039661	AGAGGAATAGCTAATCATGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12446	FBgn0031201	FBtr0077343	1	1	1	60	X	22212379	22212397	ACTTTCCGTTGAGCTACTG		59	22212337	22212355	TATGTTAAGGAGGGTGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077207,FBtr0077204,FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077206,FBtr0077210	2	8	8	103	X	21253980	21254060	CAACACGATTGTAAAGGCTG		59	21254126	21254144	TCATTTCCAGGGTGATACG		59	NA	
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572	3	5	5	82	X	20644231	20644250	AACGCTAATATACAGGGTGG		59	20643790	20644186	GACGCACTAACCTAAATCG		58	NA	
Drosophila melanogaster	50	CG17065	FBgn0031099	FBtr0077340	3	1	1	92	X	20125925	20125944	TCATAGGACTGTCAAGTAGC		58	20125852	20125872	GAATCTTCGGTGTAGAATCCT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9581	FBgn0031093	FBtr0070026	3	1	1	95	X	20063447	20063522	GAGTTCTTGTCACATGCTC		58	20063370	20063389	TAGTAGAAGTCCGAGTTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7453	FBgn0030991	FBtr0074667,FBtr0074666	3	2	2	65	X	19074920	19074939	CACTGATATACACCAGGAGG		58	19074967	19074985	GTACCTGGCTTATCCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp18a1	FBgn0010383	FBtr0074609,FBtr0074610	3	2	2	273	X	18584262	18584280	CTGGTACAGGTGATCATCG		59	18583571	18584025	CATTGAGTTCCACATCCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6762	FBgn0030876	FBtr0074492	2	1	1	214	X	17751366	17751384	AATCGTAGCGAAATCATCC		57	17751675	17752095	CTGGTTTCGTTCTTAATGGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG4653	FBgn0030776	FBtr0074321	2	1	1	87	X	16598342	16598663	GAGCTACCCAGCTAAATCC		59	16598714	16598732	TATGATCTTGGACAGAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13403	FBgn0030544	FBtr0073928	3	1	1	144	X	14085740	14085912	GAACTCCGTAACCGTACTC		59	14085614	14085632	GTACGATGGATACGAGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PhKgamma	FBgn0011754	FBtr0090002,FBtr0090001,FBtr0090000	1	3	3	80	X	11592460	11592544	ATATTTCAGAGGATCCCAAGG		58	11592583	11592604	ATACTTCCTTGACGGTTATACG		59	NA	
Drosophila melanogaster	50	rho-4	FBgn0030318	FBtr0073518,FBtr0073517,FBtr0073519	3	3	3	82	X	11498697	11498777	TACATTTCCAGGACGATCC		58	11498822	11498841	ATTGTAGATGAACAGGGTGG		59	NA	
Drosophila melanogaster	50	ran	FBgn0020255	FBtr0073471,FBtr0073472	1	2	2	74	X	11040029	11040049	GCAACAAAGTCGATATCAAGG		59	11039897	11039993	ACTGCAAGTTCTTCTTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11190	FBgn0030035	FBtr0071175	1	1	1	95	X	8300893	8300911	TAGTGGTTCGTCCATTGTC		59	8300608	8300836	GGGTGTGGTAAAGATTATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10777	FBgn0029979	FBtr0071132	2	1	1	105	X	7822581	7822836	CAAGATCAAGGTGGAGGAC		59	7822494	7822512	CTTTAGCACTGAATCACGC		59	NA	
Drosophila melanogaster	50	Pdp	FBgn0029958	FBtr0071076	3	1	1	188	X	7627164	7627182	TGTACGAGGCTAGTTTCCT		59	7626888	7626906	CAATGTGAACCAAACAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14443	FBgn0029880	FBtr0070949	1	1	1	60	X	6529653	6529671	GGTAGTCAATGGGCTATCG		59	6529693	6529713	ATCGTAAATAGCAGTCAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32751	FBgn0052751	FBtr0070880	3	1	1	110	X	6091974	6091992	ATCCTGTTCTATACTCCCG		57	6091650	6091900	AATTTGAACAGCTGTGAGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG32750	FBgn0052750	FBtr0070881	1	1	1	134	X	6089850	6089868	TTCGGTCATTTCATCTGCT		59	6089676	6089752	AAATTGAGAGGCTGTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4064	FBgn0029808	FBtr0070812	2	1	1	60	X	5679371	5679390	AATATGAGACTCACATCGCG		59	5679412	5679507	GTGTTTATCTCCTGAAGGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16732	FBgn0039086	FBtr0084419	3	1	1	102	3R	19362087	19362159	AGAAATGCTTGAGTCTGACC		59	19362004	19362022	TAGAATGTCATTGGAGGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CSN6	FBgn0028837	FBtr0084265	1	1	1	60	3R	18406944	18406963	GAAACAGTGATCAACAAGGA		58	18406986	18407062	TGAACACCTGCTTGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34376	FBgn0085405	FBtr0112609	2	1	2	223	3R	18283184	18285566	ATGGACATTCCCTCAATCG		59	18285752	18285771	TTGTTGGTCACGATTATGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Bin1	FBgn0024491	FBtr0083279	2	1	1	66	3R	12012468	12012488	GGAATCTATGATTGTGGAGGA		58	12012349	12012440	CATAGGACAGGTCTTCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5013	FBgn0038396	FBtr0083223	3	1	1	183	3R	11875629	11875698	AATACCTGAGCTGCTTCAG		59	11875844	11875863	GTCAGTAAGTACCACTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9799	FBgn0038146	FBtr0082763	3	1	1	156	3R	9212601	9212680	CAAAGGAAAGGTTGACAAGC		59	9212464	9212482	GAACTTGCGAACAATGACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	yellow-f2	FBgn0038105	FBtr0082722	2	1	1	100	3R	8820032	8820158	AGTATCCAAATAACCGCCA		58	8819950	8819969	TATACTCTCCGGAACATCGA		59	NA	
Drosophila melanogaster	50	dpr5	FBgn0037908	FBtr0082394	2	1	2	163	3R	7326150	7326859	GTTATAAGTAATTCGAGAGCCC		58	7329149	7329167	AAGTTGGACAATTCCTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15864	FBgn0040528	FBtr0081803	3	1	1	60	3R	4075502	4075681	GAATATACGAATACGCTGGG		57	4075702	4075722	TAATCATCGGGAAGATTGTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Sp7	FBgn0037515	FBtr0081740,FBtr0081742,FBtr0081741,FBtr0081743	2	4	4	88	3R	3588209	3588228	GCAGTTTGATCAACAATCGT		59	3588279	3588366	AACGGTAGTTAGGTGACCT		59	NA	
Drosophila melanogaster	50	CG34287	FBgn0085316	FBtr0112483	1	1	1	60	3R	1679449	1679467	TGAAGGACTTTGTGAAGGA		58	1679491	1679509	TCATTCCGAGAGTAATCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078808,FBtr0110933,FBtr0078809,FBtr0078810,FBtr0100199	2	11	15	91	3R	1121930	1121951	ACCAGTATTAGTCGAAGAAGAC		59	1121677	1121879	CTATTTCTGCATCTAAGCGC		59	NA	
Drosophila melanogaster	50	Csp	FBgn0004179	FBtr0078495,FBtr0078493,FBtr0078494	2	3	3	83	3L	22262520	22262538	AAGACTTACCGGAAACTCG		59	22262583	22262685	GACTTCCTTGAACTTATCAGC		58	NA	
Drosophila melanogaster	50	CG7202	FBgn0037086	FBtr0078393	3	1	1	117	3L	21485774	21485793	TAAGTTTCTTGTTCCTGGCT		59	21485287	21485696	TCTGTGTATAATTCGACTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eip78C	FBgn0004865	FBtr0078308,FBtr0078307,FBtr0078306	1	3	3	92	3L	21257078	21257157	ACTCTACGATTCTGACTTTGTC		59	21257210	21257228	GAGAAGAGTCCGATTTCGG		59	NA	
Drosophila melanogaster	50	CG18135	FBgn0036837	FBtr0075044,FBtr0075043,FBtr0075042,FBtr0075045	2	4	4	60	3L	18984754	18984772	ATGATCGAGTTGGATGTCC		59	18984712	18984733	CGAAATCGTGATAAATCACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7304	FBgn0036527	FBtr0075577,FBtr0075576	3	2	2	87	3L	15673900	15673978	AAATCAAGGAACCTGAAACG		58	15674028	15674046	TATTCAGGAGATGTGGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7275	FBgn0036500	FBtr0075547	1	1	1	94	3L	15492986	15493062	GAGGATTGCAACCTTTATACC		58	15493118	15493136	TAGTCAACATCGGTGACAG		59	NA	
Drosophila melanogaster	50	CG34039	FBgn0054039	FBtr0100094	1	1	1	79	3L	14555383	14555494	ATTAACGAACTGACAAGCG		58	14555537	14555555	ATCTTCAGTTCCAAGGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14110	FBgn0036352	FBtr0075844	3	1	1	149	3L	13377974	13378045	GTTGTTCTCACCATTCAAGC		59	13378155	13378175	GTTGATATAGGCATTACGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32085	FBgn0052085	FBtr0076133	3	1	1	170	3L	11647203	11661303	TTAATATCGTGCACTCCCTG		59	11647052	11647070	CACAGGCGATATACTCGAG		59	NA	
Drosophila melanogaster	50	simj	FBgn0010762	FBtr0076262,FBtr0076264,FBtr0076263	3	3	3	110	3L	10680696	10680777	GAAACAGACCAACAAAGATCC		59	10680848	10680867	TTAACGAATGCCTGTTTCAG		58	NA	
Drosophila melanogaster	50	CG32066	FBgn0052066	FBtr0076277	2	1	2	278	3L	10640226	10652483	CGAGATACAGATCTATCGGG		58	10639967	10639985	TACTCATCGAACTTCAGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	SH3PX1	FBgn0040475	FBtr0076413	2	1	1	83	3L	9704119	9704617	TCGACTTCACATCTACAGG		58	9704054	9704072	TCCTTTCGCTTCTGTATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7979	FBgn0035848	FBtr0076690	1	1	1	61	3L	8174976	8174994	TGTTATGACGAGGGAAAGC		59	8175019	8175324	TTCTCCTGTTTGGCATACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Clk	FBgn0023076	FBtr0100132,FBtr0100134,FBtr0076785	2	3	3	89	3L	7760034	7760052	CTACACTCATTTGAGACGC		58	7759910	7759982	GTATCGTTACGAAAGTAGCC		58	NA	
Drosophila melanogaster	50	Gr63a	FBgn0035468	FBtr0114512,FBtr0073181	2	2	2	60	3L	3896208	3896226	CGCCTCCTTTATTTACTCG		57	3896091	3896184	CACATAGCCTACATAGCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Pxn	FBgn0011828	FBtr0072950,FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951	3	5	5	150	3L	2611834	2611853	GAACAATAATCGGCTAAGCC		59	2611545	2611644	GTTGTACATGATCAGGCGA		59	NA	
Drosophila melanogaster	50	RabX5	FBgn0035255	FBtr0072804	2	1	1	72	3L	1669611	1669688	TACAGTCTGGAAATGTGGG		58	1669557	1669575	CATTGCGATAATAGGCTCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	alphaCop	FBgn0025725	FBtr0072812,FBtr0072811	1	2	2	61	3L	1643936	1644012	GGTATGGTGGTCTTTAAACTG		58	1643895	1643913	AGAATATTCCCGTGGACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13887	FBgn0035165	FBtr0072583,FBtr0072584	2	2	2	159	3L	838473	838491	TAAACTTGATCTGCACCCA		58	838614	839257	TTGTTGAGCTCGATGAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-1389a	FBgn0083046	FBtr0113525	2	1	1	64	2R	17221476	17221495	TAAAGAGATTCCGGCTAAGC		59	17221519	17221540	CTGAAAGTCTACTTTCCAAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wdp	FBgn0034718	FBtr0071849,FBtr0071852,FBtr0071851,FBtr0071850	3	4	4	60	2R	18187368	18187386	CGAGGACGACATAGATAGC		59	18187326	18187347	ATTCTCAAGAGGTCTAACATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4386	FBgn0034661	FBtr0071743	1	1	1	149	2R	17687666	17687684	TCATCAAGTTGGATGAGCC		59	17687470	17687554	CCTGAAGAGTATCGGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11110	FBgn0034535	FBtr0086231	3	1	1	157	2R	16529765	16529783	ACAGCAATACCTTTGGACC		59	16529902	16529922	CTAGTTGTAGTAGTTGCTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8929	FBgn0034504	FBtr0086283,FBtr0086285,FBtr0086284	1	3	3	80	2R	16217662	16217743	ACCTGAAGGACTATATCAAGTG		59	16217783	16217802	AGTACTCATAGTAGCGTTCC		58	NA	
Drosophila melanogaster	50	Jheh3	FBgn0034406	FBtr0086622	2	1	1	300	2R	14748958	14749037	TTCAGGGCTTGAATATTCAC		57	14748609	14748627	ATGAAGAACTTCTTGTGGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11395	FBgn0034200	FBtr0086987	2	1	1	97	2R	13024825	13024843	TGGCTATGTCACTGATCCT		59	13024904	13024999	GTTCGGATATCCATGTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8388	FBgn0034062	FBtr0087263	2	1	1	77	2R	11897640	11897714	CTTATCCCAGTCAGTATACGA		58	11897583	11897601	AGACATCACAGATCTTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Obp51a	FBgn0043530	FBtr0087420	2	1	1	159	2R	10912208	10912294	ATCCGCTTTATTCGAATCTG		58	10912068	10912086	GAATGGTGTTACCACACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6a9	FBgn0013771	FBtr0087457	2	1	1	77	2R	10767788	10767806	TGGAAAGTACAACGGAGAG		58	10767676	10767747	AGGGTTTCCGATATAACCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-phe	FBgn0020766	FBtr0087594	2	1	1	83	2R	9857093	9857181	GATATGGTGGAGCAGATCAG		59	9857227	9857245	ATAAACAATGCGGAAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4712	FBgn0033818	FBtr0087758	1	1	2	114	2R	9137561	9137579	AATCAAATTAGCGATGCCC		58	9136954	9136972	AGTCATTCAAGCTCACACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33007	FBgn0053007	FBtr0087778	3	1	1	60	2R	9035419	9035439	ACACTAACATCTCGTTGTCTC		59	9035379	9035399	CTTTCCTGAGGACTATAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ap	FBgn0000099	FBtr0086059,FBtr0086058	3	2	2	102	2R	1595762	1595780	ATGAAGTCCTACTTTGCCA		58	1595602	1595696	GAAACCAGACCTGTAGGAC		59	NA	
Drosophila melanogaster	50	CG33510	FBgn0053510	FBtr0091450	1	1	1	60	2L	21083637	21083655	AGAAGTGTCTGTTGATCCG		59	21083531	21083613	TGCTAAGACAGCTCTTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2611	FBgn0032871	FBtr0081387	1	1	1	100	2L	20650361	20650382	CGATGGATTCGTTAATGAACAG		59	20650443	20650537	CAATGCCACCGATAAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10188	FBgn0032796	FBtr0081283,FBtr0081282	3	2	2	137	2L	19506345	19507491	AGGTATTTCGACCCATTCG		59	19506226	19506245	GCTATAATTGAGCTCGTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17568	FBgn0032763	FBtr0081233	3	1	1	110	2L	19179979	19180055	GAACTTCGCGTTATGACTC		58	19179887	19179906	ACATTCCTATCTGATGCCAG		59	NA	InUTR
Drosophila melanogaster	50	CG15134	FBgn0032621	FBtr0080949,FBtr0114502	1	2	2	80	2L	16904393	16904471	CTAAGACAGGGAATCATTGTG		58	16904511	16904531	CTTGTACTGATGCTCAAACAG		59	NA	
Drosophila melanogaster	50	CG12455	FBgn0028859	FBtr0080823,FBtr0080822	3	2	2	104	2L	16238092	16238165	AGATGATCTGAACTGTGGT		57	16238233	16238251	CTGGAATTCGTTACCTTGG		58	NA	
Drosophila melanogaster	50	CG4218	FBgn0028881	FBtr0080662	2	1	1	172	2L	14547793	14547883	CAATTTCCAGGACTATGGTC		57	14547640	14547658	CCTAGTAGATGGGCTTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8292	FBgn0032004	FBtr0079632	1	1	1	98	2L	8217756	8217775	CCAAGTTTACGGATAAGGGT		59	8217615	8217695	GATCGTTATACTGCCACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wg	FBgn0004009	FBtr0079433,FBtr0079432	2	2	2	106	2L	7314644	7314662	GATCAGCAAGATCCATCAC		57	7314732	7314881	ATCTATTATGCTTGCGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	tRNA:CR31896	FBgn0051896	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089658,FBtr0089660,FBtr0089662	2	3	7	103	X	17824693	17824711	ATTACTTCTATCACCGCGA		58	17824460	17824626	CAAATGTTGACCTAGTGCA		57	NA	
Drosophila melanogaster	50	Ucp4A	FBgn0030872	FBtr0074464	3	1	1	131	X	17739670	17739688	CTTACATCGTTTCCGTGGT		59	17739780	17740725	GGTATTGCATATTGGACTTTCC		59	NA	
Drosophila melanogaster	50	kat80	FBgn0040207	FBtr0074247,FBtr0074246	1	2	2	80	X	16168526	16168607	AGTGCTTTATGTCTCTGACG		59	16168465	16168485	CGGAGTAGACAAAGTTATCCT		58	NA	
Drosophila melanogaster	50	CG16952	FBgn0030701	FBtr0074115,FBtr0074114,FBtr0074116	3	3	3	80	X	15765546	15765902	CAATAGCACAGAAAGATCTGTC		59	15765943	15765961	TTTGGGAACTCCTTGAACC		59	NA	InUTR
Drosophila melanogaster	50	CG33174	FBgn0053174	FBtr0073825	2	1	2	162	X	13699489	13699507	AAATACGACAGTGGTTGGA		58	13700689	13702412	AAGACACGACCTTCTTGAG		59	NA	
Drosophila melanogaster	50	CG32627	FBgn0052627	FBtr0073814,FBtr0073815,FBtr0113441,FBtr0073813	3	4	4	131	X	13606925	13607018	CAAAGCCATGATTAGAAGACTG		59	13607110	13607128	GTTAACTTCTTCTCCGGGT		58	NA	
Drosophila melanogaster	50	CG11146	FBgn0030397	FBtr0073666	2	1	1	78	X	12413264	12413282	AGGACTATTCGCTATCCCT		59	12413142	12413160	ATGTACTGTCCAGTCTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Klp10A	FBgn0030268	FBtr0073478,FBtr0073475,FBtr0073477,FBtr0073476,FBtr0073479	1	5	5	93	X	11027534	11027552	TTGTGACCCTGAATATGCC		59	11027383	11027477	AGAAGATCGAAGACCTTGC		59	NA	
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	3	8	9	95	X	10692567	10692660	GAATAAGGGTGAAATTTGCC		57	10692491	10692509	TGCATGATCCGTTTAATGG		58	NA	
Drosophila melanogaster	50	CG32776	FBgn0052776	FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630	2	4	4	88	X	3791673	3795151	CCTGAGTCTCGATGATGAC		59	3791603	3791623	CGGGATGATCAATAATCTCCA		59	NA	
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514	1	9	14	83	X	3215176	3215194	TCTATATCGCTCCGATTCG		58	3215240	3219968	TCTTTAAACCTTTCGCTAGC		58	NA	
Drosophila melanogaster	50	CG2865	FBgn0023526	FBtr0070408	2	1	1	62	X	2186463	2186481	TGGAGAGGATCAAGGACTC		59	2186419	2186437	AGTAGGTGTTGTTGATGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14798	FBgn0029588	FBtr0089693,FBtr0089694	1	2	2	290	X	1587078	1587096	AAATCGAGCCTCACATCAG		59	1587472	1587490	AAAGTCATGGGATCCTTGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	RpL36	FBgn0002579	FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156	3	4	4	114	X	522710	522792	TTGAAGAACATCCAAACCC		57	522614	522632	TATCCTTGGACACCTTCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CR41604	FBgn0085814	FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269	3	4	4	104	U	3449415	3449487	TTTCTGAAGCAAAGTCCCA		59	3449555	3449573	CTTGATACTGATCTCCCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Dhap-at	FBgn0040212	FBtr0084897	1	1	1	90	3R	21312780	21312798	CAATGAATGCTCGCATGTC		59	21312650	21312729	CAAAGGGATCTTTCTTAACGTG		59	NA	
Drosophila melanogaster	50	CG6454	FBgn0039187	FBtr0084608,FBtr0084609	1	2	2	80	3R	20179238	20179351	ACCATATCTGACGATGTCTG		58	20179391	20179412	CGATACAGATCGATTAAACACC		59	NA	
Drosophila melanogaster	50	CG6982	FBgn0039014	FBtr0113267,FBtr0113268	3	2	2	134	3R	18555138	18555156	GATTGGTTAATGGCCTCAG		58	18555254	18555342	CTTAATGTAGCCGACATCG		58	NA	Nonspecific
Drosophila melanogaster	50	cpo	FBgn0000363	FBtr0083534,FBtr0083536,FBtr0100377,FBtr0083535,FBtr0083537	3	5	6	176	3R	13793463	13793481	CGCCATAATGGAGAATCAG		58	13832727	13832810	CCTTCATAGCCCTCATAGG		58	NA	
Drosophila melanogaster	50	CG5013	FBgn0038396	FBtr0083223	1	1	1	60	3R	11875847	11875868	AAGTGGTACTTACTGACAACTG		59	11875889	11875907	CAGGACTTTCGGATATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His4r	FBgn0013981	FBtr0082962,FBtr0082963,FBtr0082964	2	3	3	69	3R	10451846	10451864	TAACATCCAGGGTATCACC		58	10451897	10451915	AGAGATACGCTTAACACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pum	FBgn0003165	FBtr0081991,FBtr0081992,FBtr0081990	3	3	5	281	3R	5059500	5059518	CATTGTAGGATCTCGAGGT		58	5058565	5059255	CATTTGTCCGGGTTATCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2051	FBgn0037376	FBtr0078670,FBtr0078669	2	2	3	80	3R	1613834	1613947	TGTTACTTCTTGAGCTACGA		58	1613773	1613791	GTATACGGTGGTGTAACCA		58	NA	
Drosophila melanogaster	50	CG12746	FBgn0037341	FBtr0078690,FBtr0078692,FBtr0078689,FBtr0078691	3	4	4	80	3R	1392052	1392070	AAACTCTAATGCGAAGCTC		57	1392114	1392200	GTCTCCAACTTGAAGAAGG		57	NA	
Drosophila melanogaster	50	CG32452	FBgn0052452	FBtr0078524,FBtr0078523	3	2	2	60	3L	22712450	22712469	CTCCGATAGTTACACTTCAC		57	22712492	22712510	AGGTACTGGATCATCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4365	FBgn0037024	FBtr0078254,FBtr0078253,FBtr0078252	2	3	3	66	3L	20792309	20792327	GCATGGAGATCAAGATCCT		58	20792356	20792375	GTCTTCGTGTCTACAATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fbl	FBgn0011205	FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188	3	4	5	150	3L	20381809	20381827	CAAGCTGGTCTACTTCGAG		59	20381940	20383027	GACATTGTCCATCTGTAGGT		59	NA	
Drosophila melanogaster	50	Rad9	FBgn0025807	FBtr0075080,FBtr0112917	3	2	2	91	3L	18864947	18865074	AGATGCCGAATATAATCCGT		58	18864875	18864893	TGCCTCCAAAGTAAGTTCC		59	NA	
Drosophila melanogaster	50	CG33924	FBgn0053924	FBtr0091928	2	1	1	60	3L	17712636	17712656	AACCGACGGTACTAAATATGG		59	17712596	17712614	TGATTCGGATCCAGAAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nedd4	FBgn0036736	FBtr0075176,FBtr0075177,FBtr0075179,FBtr0075178	3	4	4	82	3L	17537426	17537445	TTAGTTCGGTAACGAAGACC		59	17537489	17537571	GCCTCCATAATCTAAGCCAG		59	NA	
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	3	8	8	172	3L	16956749	16956767	ACGTCAAGTACAAGGACTG		59	16956901	16956979	CAATAGACCCTTGTGAATCAC		58	NA	
Drosophila melanogaster	50	bru-3	FBgn0036379	FBtr0075815	3	1	2	118	3L	13644686	13657527	CAAGTTACTGTAAGTTGCCA		58	13595558	13595576	AGCTTGCGATCTAAATGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7638	FBgn0036133	FBtr0076210	1	1	1	80	3L	11104452	11104532	TCAAGCAGAAGATCTCGTC		59	11104576	11104594	AAAGGCATAGGATCAGTGG		59	NA	
Drosophila melanogaster	50	path	FBgn0036007	FBtr0076427	1	1	2	135	3L	9492179	9492274	TTAACATAGTGGACAGCGG		59	9490252	9490270	TCAAAGTCATTTCCAGCCA		59	NA	
Drosophila melanogaster	50	SP1173	FBgn0035710	FBtr0076960,FBtr0076959,FBtr0076958	1	3	4	87	3L	6685394	6685479	AATAACCGGTCTTACAGCT		58	6685325	6685343	AGTAATGGTCCGGTATTCC		58	NA	
Drosophila melanogaster	50	CG1268	FBgn0035521	FBtr0113137,FBtr0073230,FBtr0113136	2	3	3	97	3L	4262901	4262919	CCTCACCAGAATCTGATCC		59	4262980	4262998	ATCAAGGGATTCATTTGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	n-syb	FBgn0013342	FBtr0072815,FBtr0072817,FBtr0072816,FBtr0072819	3	4	5	300	3L	1635310	1635329	AGAGGAAATTCTGGCTTCAG		59	1632235	1632253	TCGAGAAACTTTCGTCCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG9130	FBgn0035197	FBtr0072657	1	1	2	179	3L	1254314	1254405	CATGAACGAGAATGTGGAC		58	1254548	1254566	TTCTTGAGTACGCGTATGG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Glut1	FBgn0025593	FBtr0112911,FBtr0072617,FBtr0072616,FBtr0112909	3	4	6	81	3L	982228	982246	CCTGCATCTCTATGGTCTG		59	982289	983866	GTCGATCATTTCCTTGATCAG		58	NA	
Drosophila melanogaster	50	5SrRNA:CR33355	FBgn0053355	FBtr0086347	1	1	1	62	2R	15653009	15653027	AATACATCGGTTCTCGTCC		59	15652965	15652983	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lcp9	FBgn0025578	FBtr0072430	3	1	1	60	2R	20667762	20667780	GGCTGATGTTGTAAAGAGC		58	20667720	20667741	CTCATAAGCGTAGTTAAAGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)tid	FBgn0002174	FBtr0089505,FBtr0089503,FBtr0089504	3	3	3	122	2R	19594943	19594961	CAAGAAGTACCATCCGGAC		59	19595047	19595065	CCATAGGTGTCGTACTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vrp1	FBgn0034695	FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104	1	7	7	86	2R	17998431	17998841	CAACCTAAATATCTCGTTAGGC		58	17998366	17998384	AGACTGCTGTTTAAGGACG		59	NA	
Drosophila melanogaster	50	otp	FBgn0015524	FBtr0110772,FBtr0071557	2	2	3	182	2R	16774171	16774189	AGACAACCAATGTCTTCCG		59	16772853	16772871	GCTGGTACATCATGGAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Obp57e	FBgn0050145	FBtr0086265	2	1	1	62	2R	16435435	16435454	TAGAGTTGGTAACATGTCGC		59	16435392	16435410	CATATGATAGCTCGCACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30154	FBgn0050154	FBtr0086215	1	1	1	146	2R	16420908	16420926	TCAACAACTCTGGGTTCTC		59	16421104	16421123	ACTATATTGTCGGTGGACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syn2	FBgn0034135	FBtr0087095,FBtr0087096	3	2	5	119	2R	12442743	12443115	TTCCTTCAGAAACAACTACCTC		59	12443195	12443213	GACACCTGTGGAAATTCCA		59	NA	
Drosophila melanogaster	50	CG12970	FBgn0034047	FBtr0087289,FBtr0087288	3	2	2	60	2R	11743958	11743978	GATATGGAGATAAGCTCAAGG		57	11743999	11744018	ACCAAATGGATCAACAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cg	FBgn0000289	FBtr0087526,FBtr0087528,FBtr0087529	3	3	7	127	2R	10064189	10065378	CAAGAACTGTGACATACTTCC		58	10065467	10065485	ACAACTCTAATGTGCCTGG		59	NA	
Drosophila melanogaster	50	CG6280	FBgn0033866	FBtr0087628	1	1	1	181	2R	9643168	9643186	ATCGAAGGTCCAAACTTGG		59	9643452	9643470	TAACCATGTCCATTGGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6220	FBgn0033865	FBtr0087650	1	1	1	60	2R	9580389	9580407	CCAAGTACAATCGCTATGG		57	9580347	9580365	TTTATGCCGAACTCTTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0087931,FBtr0113074,FBtr0087929,FBtr0087930	3	6	6	206	2R	8335670	8335688	ATAACTCGGGCAAGATACG		59	8335921	8335939	CCTTGTAGTGGAATGTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr49Ag	FBgn0033730	FBtr0087922	2	1	1	61	2R	8295497	8295515	GGATAATGTGAACAACGCC		59	8295621	8295639	GTATTCCGTTCGATGTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7759	FBgn0033633	FBtr0088133,FBtr0088134	2	2	2	113	2R	7294149	7294167	CTCAGCAGATGTAAAGCCA		59	7294244	7294317	ACCACAGTTCTCATGAAGC		59	NA	
Drosophila melanogaster	50	Pka-R2	FBgn0022382	FBtr0088438,FBtr0088437,FBtr0088439	2	3	5	218	2R	5885776	5885794	GAACGCATCATCAAACAGG		59	5884113	5885213	CTTGACATCGAGGAATGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG30492	FBgn0050492	FBtr0088913,FBtr0113382,FBtr0088914,FBtr0088915	1	4	6	87	2R	3538430	3538448	CCATCTGTTAAGGCTCTGG		59	3538499	3538583	CTATTCTAACCTTGGCCCG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111054	1	1	60	94	2R	3249290	3249308	ATACAAGAGCTACCAGTGC		59	3240862	3249233	AAATAGGCTCTGTGATGACC		59	NA	
Drosophila melanogaster	50	CheB42c	FBgn0066292	FBtr0086191	1	1	1	80	2R	2832494	2832515	GTTTAAGTACTGGACCAAACAC		59	2832365	2832453	ATTATAACGGTACCACGCG		59	NA	
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0081213,FBtr0081212,FBtr0081210	3	3	6	178	2L	19410626	19426206	GATGCTCTATTAGCCGACC		59	19410400	19410485	TAGTGCTCTTGATACACCTG		58	NA	
Drosophila melanogaster	50	CG17323	FBgn0032713	FBtr0081104	3	1	1	93	2L	18825812	18825830	ATTTCGAGGATATAGGCGA		57	18825944	18825962	GAGTGGGAGACTACTTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ca-alpha1D	FBgn0001991	FBtr0090004	3	1	4	89	2L	16181896	16182782	AGTACAACTCTTTAAGGGCA		58	16182894	16182913	TCATAGACCAGATAGGTTCC		57	NA	
Drosophila melanogaster	50	CG14930	FBgn0032366	FBtr0080245	1	1	1	94	2L	11521185	11521203	TCTGGAGTTCGTAGATGGT		59	11521047	11521127	TTGCCAAAGTATAAGCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5385	FBgn0032215	FBtr0080062	2	1	1	60	2L	10311765	10311783	TGGTGAACCCTCAAATACG		59	10311723	10311741	CCTTATTGGAATATCCGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Traf1	FBgn0026319	FBtr0077429,FBtr0077430,FBtr0112925	2	3	3	70	2L	4379579	4379597	AGATCCAGATGCTCAAGTC		58	4379631	4379649	GATCTTCCACAACAGAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	drongo	FBgn0020304	FBtr0078035,FBtr0078036,FBtr0078037	2	3	3	120	2L	836547	836565	TCCCATCTACAATGCAGTG		59	835447	835465	GTCGAGATCCTTAAGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089431,FBtr0089436,FBtr0089435	2	3	10	116	2L	111013	111031	TGGAAGACACTTAACCTGC		59	111110	112701	AAACATGATACCCTGGTCAC		59	NA	
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089431,FBtr0089436,FBtr0089435	3	3	10	118	2L	111010	111030	GATTGGAAGACACTTAACCTG		58	111110	112700	AACATGATACCCTGGTCAC		58	NA	
Drosophila melanogaster	50	CG15604	FBgn0030713	FBtr0074157	1	1	1	132	X	15846073	15847920	ATCAGTCACATGCAGTCAC		59	15845959	15845977	TATACCCTTCTCTGTGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11095	FBgn0030528	FBtr0073827	2	1	1	72	X	13706074	13706158	GGCACGAATGAAATATCCC		58	13706194	13706212	AGGAGATCTGAAAGCTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	c12.1	FBgn0040235	FBtr0071324	1	1	1	72	X	9213078	9213096	AAAGGATCTGAGTGCACTG		59	9212961	9213044	CCTGTATTTCAGTTTCGTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5778	FBgn0038930	FBtr0084182,FBtr0113265	2	2	2	115	3R	17911577	17911962	CTACGACTGTAATCCACCC		59	17911480	17911498	CGTTGTAGTATCCTCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr92a	FBgn0045471	FBtr0083865	3	1	1	110	3R	15947779	15947857	CTACGCTGGATACTTTATTCCT		59	15947928	15947946	GGAGTGCTGATAAGAACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083265,FBtr0083261,FBtr0100333,FBtr0083263	2	7	8	116	3R	12125398	12126972	ATGGTTCAGTACAGGTTGTG		59	12127051	12127069	TTTCATCGACCACTTCGAC		59	NA	
Drosophila melanogaster	50	kin17	FBgn0024887	FBtr0078181	1	1	1	72	3L	20350906	20350924	ATTGACAGATATCAGGGCA		58	20350960	20351050	CCAAATGAGCTTGATCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scyl	FBgn0041094	FBtr0076168	3	1	2	63	3L	11246056	11246817	TAAAGATTGGACCAGCAGAC		59	11246843	11246861	CTTCTTGGACATCAGGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kaz1-ORFB	FBgn0063923	FBtr0072488,FBtr0100851,FBtr0072493,FBtr0100224	2	4	6	108	3L	217438	217504	ATTTGTTTCAGGTCTTGCC		58	217576	217594	TATCGTAGGTTCAGTGGGT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	ari-2	FBgn0025186	FBtr0071774	2	1	1	99	2R	18103673	18103751	CTCTTTGAGTACCAGCAGG		59	18103814	18103832	GATTCTCGAGATCACCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15651	FBgn0034567	FBtr0071553	2	1	1	192	2R	16872902	16872979	ATGTGATTTGTTCCTGCAG		58	16872671	16872689	CTGTTTGGTGTGAAAGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11048	FBgn0034487	FBtr0086316	3	1	1	244	2R	16128045	16128063	CGAAAGTGGAGAACTCAGG		59	16128270	16128410	AATTTCTGTTGTGGGATCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Obp56a	FBgn0034468	FBtr0086476	2	1	1	65	2R	15585277	15585296	GAACTCCTACTTCGTGATCG		59	15585324	15585581	TTAAGGGACGATCCAACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hts	FBgn0004873	FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086547,FBtr0086548	3	6	6	87	2R	15297367	15297385	AGAACGATGTCGAACTACC		59	15297237	15297316	TTCTTCCAGATCCCTTGAC		58	NA	
Drosophila melanogaster	50	CG6805	FBgn0034179	FBtr0086966	1	1	1	130	2R	12894007	12894306	TTTAAGTTCGTGGAAGGCA		59	12894400	12894418	TGATAAGACAGCTGGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr22e	FBgn0045497	FBtr0077888	2	1	1	88	2L	1785075	1785148	AAGTATCACGGACTTTGCA		59	1785200	1785218	AACCCATCTCGTAGTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR32546	FBgn0052546	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG41355	FBgn0083997	FBtr0111185	3	1	1	66	X	22324591	22324609	GCATATTAACGGTTTGCCG		59	22324543	22324561	TACTCGTAGACGTTGACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1678	FBgn0031176	FBtr0077219	2	1	1	283	X	21273723	21273741	CGTGTAATCTTCCTCATCG		57	21273458	21273476	TTTACATGAAGGACTCGGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11227	FBgn0031139	FBtr0077274,FBtr0077273	2	2	3	60	X	20802902	20802920	ATAGAGTTGCGAATGAGCC		59	20802860	20802878	GGCGATATTCATGATCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12701	FBgn0031071	FBtr0074808,FBtr0074807	2	2	2	60	X	19671574	19671592	AATCAAGAGCGAGTACGTG		59	19671532	19671552	GTAGAGCTCTATGCTCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tao-1	FBgn0031030	FBtr0074771,FBtr0074772	2	2	4	200	X	19471224	19471307	AAGAGATACGCTTCCTTCG		59	19471042	19471060	GATAGCTCAACCCACTGAG		59	NA	
Drosophila melanogaster	50	car	FBgn0000257	FBtr0074727	1	1	2	187	X	19461774	19461792	TCCATCTGCAAACAGAGTC		59	19462065	19462083	GATTTGGCTCTTAAGCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Grip84	FBgn0026430	FBtr0074775,FBtr0074777,FBtr0074776	2	3	3	80	X	19457158	19457176	ATCTCCAAGTACCAAATGC		57	19457034	19457114	TTCCTTCCAAATCTTGCAC		58	NA	
Drosophila melanogaster	50	CoRest	FBgn0053525	FBtr0091483,FBtr0091480,FBtr0091482,FBtr0091484,FBtr0091481	3	5	5	160	X	19417451	19417529	GCAGTCTGAGTACGAAGAG		59	19417651	19417756	ACTCCTCCAATTTCAGATCAG		59	NA	
Drosophila melanogaster	50	CoRest	FBgn0053525	FBtr0091480,FBtr0091482,FBtr0091481	1	3	5	171	X	19418034	19418052	ATCCATAGCCAGTTTGGTC		59	19418187	19419220	GGCGATTATCTTGTCATCG		58	NA	
Drosophila melanogaster	50	Pfrx	FBgn0027621	FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720	3	8	8	60	X	19402026	19402044	GTTAAACGAGATCGATGCC		58	19402068	19402086	CTTCTCCTTGATTTGCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pfrx	FBgn0027621	FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720	1	8	8	60	X	19401733	19401752	GTCGTCTACAATAACGAGGG		59	19401772	19401793	GGATGTTCATCAGGTAGTAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8051	FBgn0031012	FBtr0074683	1	1	1	83	X	19197563	19197679	CGTTAACATTCTAGTGACGT		57	19197499	19197517	CTGGAGATTCCTAGACCAG		58	NA	
Drosophila melanogaster	50	CG15882	FBgn0030983	FBtr0074703	3	1	1	61	X	19018199	19018217	GAATGATGTCGACATTGCC		59	19018156	19018176	CTTCCTTCGAAACAGATTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pk17E	FBgn0004462	FBtr0074634	3	1	1	81	X	18685101	18685186	CAACCTCCATATTCTATCGGAG		59	18685228	18685246	ACGAACCAGATCAATGGAG		59	NA	
Drosophila melanogaster	50	CCKLR-17D1	FBgn0030950	FBtr0113002,FBtr0113001,FBtr0074608	2	3	3	207	X	18607851	18607869	AGATCATCGCCATCATCTG		59	18607608	18607626	AGATAGGTGAAGCTCAGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	betaCop	FBgn0008635	FBtr0074576	3	1	1	60	X	18276341	18276428	CTTCGGCAATATTGTTTACG		57	18276300	18276318	AATGGTATTGAGGACCACC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG8661	FBgn0030837	FBtr0074444	1	1	1	60	X	17178270	17178291	TACAAATCCCTAAAGATCGCTC		59	17178231	17178252	CCCACTTGATTATGCAATTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rrp45	FBgn0030789	FBtr0074355	1	1	1	266	X	16684011	16684031	CAGTTGGATAATAACGAGAGC		58	16683710	16683728	CTAGATGTATCGCTTGGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15642	FBgn0030642	FBtr0074076	3	1	1	78	X	15361277	15361296	ATCATTTGTGGAACCTGGAG		59	15361218	15361236	TATAGGCGTACGGATTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15032	FBgn0030626	FBtr0112986	3	1	2	107	X	15200610	15204426	CATCTGGAGAACATGGAGG		59	15204496	15204515	AAAGTAGGGAATGTCTTGCT		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG9413	FBgn0030574	FBtr0073943,FBtr0073944	2	2	2	91	X	14482758	14484291	GGAACTATGATAGGGTCTGG		58	14482686	14482705	GCAAGCCAGATTATAAAGCT		58	NA	
Drosophila melanogaster	50	CG11674	FBgn0030551	FBtr0073926	2	1	1	61	X	14119285	14119303	AATCAAGCTGTCTAGAGGA		57	14119242	14119260	CTTTGTCAGGCAAATCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ste:CG33240	FBgn0053240	FBtr0073877	1	1	1	60	X	13950151	13950170	GTATTTCAGCGAGATACTGG		57	13950110	13950128	CAAGCCAGAGGAACTATCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10992	FBgn0030521	FBtr0073838	1	1	1	140	X	13674680	13675206	TACGGATCTAATCAGGGCT		59	13674558	13674576	ATAATCGACGGTGTAACCG		59	NA	
Drosophila melanogaster	50	rdgB	FBgn0003218	FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194	1	4	4	81	X	13663029	13663047	GGACAATGGCTATCAGGAC		59	13663089	13663193	GACAATGTCAATTACGTCTACG		59	NA	
Drosophila melanogaster	50	sno	FBgn0005410	FBtr0073736,FBtr0112848,FBtr0073735,FBtr0112849	1	4	4	113	X	13100745	13100763	GATCAAATAGAAGTGCCCG		58	13098089	13098107	TATGGGTATGGGTATACCG		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	tomosyn	FBgn0030412	FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678	2	4	4	84	X	12531143	12531162	GAAACATACACGTTGTTCAC		57	12531208	12531302	GTTCTAACCACTTCAATTGC		57	NA	
Drosophila melanogaster	50	CG12720	FBgn0030379	FBtr0073631	2	1	1	111	X	12090626	12090644	GAGTTCATTCCCACCAGTC		59	12091280	12091496	TCTTGACGTACCCATTTGAG		59	NA	
Drosophila melanogaster	50	CG15221	FBgn0030331	FBtr0112979	3	1	1	181	X	11628579	11628597	AACATCTGGATGCTGATCG		59	11628742	11628832	ATACCAATCGCCATAGCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG2446	FBgn0030328	FBtr0073615,FBtr0073618,FBtr0073619	1	3	5	80	X	11607718	11607802	GCAGGAGACTAAACACCAG		59	11607656	11607677	CTCCTTATCGTGGTATCTATCG		59	NA	InUTR
Drosophila melanogaster	50	rho-4	FBgn0030318	FBtr0073518,FBtr0073517,FBtr0073519	3	3	3	82	X	11498697	11498777	TACATTTCCAGGACGATCC		58	11498822	11498841	ATTGTAGATGAACAGGGTGG		59	NA	
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073490	2	1	12	200	X	11276004	11281814	AATAGCTGATAATCAGCGCA		59	11289281	11289301	TCGTATAACCAGCTATCATCG		59	NA	
Drosophila melanogaster	50	antdh	FBgn0026268	FBtr0073468	2	1	1	115	X	11062726	11062744	GTAATGCAGCAGGTATTGC		59	11062629	11062647	ATGCTATTGATGAGCACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sesB	FBgn0003360	FBtr0073423,FBtr0073422,FBtr0073421,FBtr0073424	1	4	4	116	X	10676325	10676422	GTACAAGCAGGTCTTCCTG		59	10676227	10676245	GGGTAGACAAAGCACAGAG		59	NA	
Drosophila melanogaster	50	Gbeta5	FBgn0030011	FBtr0071189	1	1	1	71	X	8045298	8045316	CATCTTTGGCGTCAATTCG		59	8045245	8045263	GTGTAATCGTTGTAGCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10920	FBgn0029963	FBtr0071150	3	1	1	60	X	7747490	7747508	AGTTCTGGTGGAATCTGAC		58	7747448	7747467	TGTGTTATAACCACTACGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34338	FBgn0085367	FBtr0112540	2	1	1	81	X	7663070	7663090	CGAGGACAAACAACATAATCG		59	7663130	7664835	GGGATAAATTCGACATCTTCTG		58	NA	
Drosophila melanogaster	50	CG15035	FBgn0029949	FBtr0071063	1	1	1	60	X	7296322	7296340	GGTTATGACTTCGATGCAG		58	7296280	7296299	TCGGGAATTGAATGGTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100214,FBtr0100200,FBtr0100205,FBtr0100201,FBtr0100206	1	5	15	191	X	6982728	6982746	GAAAGACACTCACTGACTC		57	6979978	6981655	ATTCTGTATCCATTCCGGA		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG32736	FBgn0052736	FBtr0071007,FBtr0071008	1	2	2	60	X	6905876	6905894	GAAGAACTACGTGGAAGAG		57	6905918	6905936	TTAGTTGGTGTTATTCGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pod1	FBgn0029903	FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966	2	5	6	106	X	6701674	6702857	CAATTATTCCACGTTTGGGTC		59	6702925	6702943	GATATTCTCGTGGGATCCC		58	NA	
Drosophila melanogaster	50	CG14445	FBgn0029851	FBtr0112954,FBtr0070893	3	2	2	119	X	6132220	6132983	GATTCTACCGCAAGATTGC		58	6133066	6133084	AATCGAACTTGTACATGGC		58	NA	
Drosophila melanogaster	50	CG12729	FBgn0029816	FBtr0070819	2	1	1	60	X	5739858	5739877	ATTCCACCTGTAAGTCATCG		59	5739898	5739918	CTCTTTATGAACTTGTCCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4064	FBgn0029808	FBtr0070812	1	1	1	63	X	5679370	5679389	AAATATGAGACTCACATCGC		57	5679490	5679509	TTGTGTTTATCTCCTGAAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15768	FBgn0029806	FBtr0070834	3	1	1	68	X	5670684	5670702	TTAAATTCGCACCAACTGC		59	5670634	5670652	AGTATCGTTCGGTTTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17761	FBgn0040914	FBtr0070856	1	1	1	202	X	5537046	5537064	AAAGATTACTGGACCAGCC		59	5535973	5535991	ATCCAAATTGAAGTCCTCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15471	FBgn0029726	FBtr0070733	3	1	1	60	X	4676888	4676906	TCGTTGACACAGATGATCG		59	4676846	4676864	ATAATCGCATACTCGGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15471	FBgn0029726	FBtr0070733	1	1	1	60	X	4676651	4676669	GGACAAGACATTCGATCAC		58	4676609	4676627	GTGTCGTACTTTAAAGCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0334	FBgn0028325	FBtr0070708,FBtr0070710,FBtr0070709,FBtr0070711	1	4	4	145	X	4598141	4598234	ACAACAACTACGGAATGGG		59	4598343	4598361	ATAGTTGATGGCGAACTCG		59	NA	
Drosophila melanogaster	50	Usf	FBgn0029711	FBtr0070701,FBtr0070700	2	2	2	60	X	4440714	4440733	TCGACGTTTAATGTTACCCT		59	4440673	4440692	CCTCGAATAGATCACTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sgs4	FBgn0003374	FBtr0070524	2	1	1	61	X	3144871	3144889	CACCCAAGTGTAAATCCGA		59	3144914	3144932	CTTTGGCTTAGATGTGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trol	FBgn0001402	FBtr0070451	2	1	7	106	X	2417516	2417534	TTTGGAAGTAAGTTGCAGC		58	2416445	2417449	TCCTCGATATCACTAGATTCAG		58	NA	
Drosophila melanogaster	50	boi	FBgn0040388	FBtr0070458,FBtr0070457	1	2	3	147	X	2340562	2340580	AAGCGGACTTTGTTACCTC		59	2339616	2340452	CCAGAGTTGTTCTTATCGGA		59	NA	
Drosophila melanogaster	50	ptr	FBgn0003159	FBtr0070404,FBtr0070403,FBtr0070402	3	3	3	100	X	2243041	2243059	AGAGTTCCACTGAGTAAGC		58	2242892	2242910	TACACCTGACTAGCATCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4325	FBgn0026878	FBtr0070342	1	1	1	60	X	1937204	1937224	CGAGAATCTACTTTACGAGAC		57	1937164	1937182	CCGCTGGTTAAGATATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF2B-epsilon	FBgn0023512	FBtr0070350,FBtr0070351	2	2	2	60	X	1814876	1814895	GGATTCCATGATGGATTGTC		58	1814774	1814793	CACTAGATGATTCTCCTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	arm	FBgn0000117	FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988	2	4	5	93	X	1787501	1787519	CAGAAGAAGCATATGAGGG		57	1786143	1787446	GTATCATATCCTTGCTGATGG		58	NA	
Drosophila melanogaster	50	MED18	FBgn0026873	FBtr0114454,FBtr0070308	3	2	2	115	X	1760520	1760607	TAGCAAAGGGCTATATGTTCC		59	1760684	1760702	GTAGCTTTGTGAGATTGGC		58	NA	
Drosophila melanogaster	50	a6	FBgn0023130	FBtr0070279	3	1	1	138	X	1589105	1589123	ACAGCATCCTGATAACCAG		59	1588985	1589004	GTTACCTCTTCGATGGTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33082	FBgn0053082	FBtr0070174	1	1	1	60	X	925359	925377	TCTTAGAGTGCTCACTCTG		58	925401	925419	CAGTCTCTTTGACTGTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13361	FBgn0029532	FBtr0070149	2	1	1	60	X	646583	646603	CAGATCGTCTACATCGATGAG		59	646543	646562	TAGTGGGACTCAGAGTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40948	FBgn0085541	FBtr0113954	1	1	1	60	U	8664463	8664484	ATACTAGACACATGGAACAAGG		59	8664424	8664445	TCTCCGATGTCTTGAATAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40992	FBgn0085550	FBtr0113963	1	1	1	60	U	5052778	5052796	CGCTCTGTATGTTTGAGGT		59	5052736	5052757	GATATACAACAGTCCACTTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40849	FBgn0085525	FBtr0113938	3	1	1	123	U	2835802	2835823	GCTATACAAATAAGGAGGAAGC		58	2835700	2835718	TCCTCAGCTATGGATTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0100346,FBtr0100342,FBtr0089328,FBtr0100343,FBtr0089327	1	5	7	102	4	1131421	1131439	GTACCCGGTTCAGATTACG		59	1131504	1131922	AGGACGAATTTATCAAGCCA		59	NA	
Drosophila melanogaster	50	Eph	FBgn0025936	FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086	1	4	5	108	4	640795	640889	GCTCAACAGATATCCAGGT		58	640961	640979	TTATAGTGTCGAGTTGCCG		59	NA	
Drosophila melanogaster	50	Map205	FBgn0002645	FBtr0085876,FBtr0085875	3	2	2	60	3R	27884514	27884535	GAACTTCGTTGTTGAAGAAGAG		59	27884475	27884494	AGAAAGCGGTATCTCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gammaCop	FBgn0028968	FBtr0085794,FBtr0085793	1	2	2	102	3R	27400438	27400532	ATTCCATAGCCACCTTTGG		59	27400598	27400616	ATGTACTCGTCGTCATAGC		58	NA	
Drosophila melanogaster	50	CG9737	FBgn0039758	FBtr0085639	3	1	1	81	3R	26068275	26068296	ATGATCGTCATATCCTAACAGC		59	26068151	26068234	AAACGCACATGCTTTAATCC		59	NA	
Drosophila melanogaster	50	CG31029	FBgn0051029	FBtr0085585	1	1	1	272	3R	25956420	25956438	GTCGTACCCAACTGATCTC		59	25956113	25956184	TCAAGAAGGTGTAGCATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Jon99Ci	FBgn0003358	FBtr0085511	3	1	1	62	3R	25751839	25751857	GTCTGTAGTGCCCTAACTG		59	25751795	25751813	ATGACGAATCTCCAGATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31036	FBgn0051036	FBtr0114571,FBtr0085501	3	2	2	80	3R	25736319	25736401	ATCTGAACCCTACATCAGG		58	25736444	25736463	GAGTTAAAGAATCCAGCCTG		58	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	2	8	8	121	3R	24962130	24962213	ACCAATGATAAGCCCTACTC		58	24962294	24962315	CCCATGAACATATAGGTTTCAC		58	NA	
Drosophila melanogaster	50	CG14061	FBgn0039598	FBtr0085313	1	1	1	60	3R	24582932	24582952	GGAATTAGCATTCGATGATCC		58	24582892	24582911	AATGGAATTCTTGACTTCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4884	FBgn0039565	FBtr0085264	1	1	1	84	3R	23783411	23783429	GTCAATGGAAAGAAGCTGC		59	23783293	23783311	TCGATTGACTAAAGCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31055	FBgn0051055	FBtr0085244,FBtr0085242	2	2	3	125	3R	23512759	23512777	AATGACACCCAATTTGTCG		58	23512282	23512670	TTGCCGAATCTTACAATCC		57	NA	
Drosophila melanogaster	50	CG5590	FBgn0039537	FBtr0085215	3	1	1	120	3R	23504525	23504543	TTCTCGGGTAAACTGAAGG		58	23504627	23504645	CCTACAGCTTGGACTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	raps	FBgn0040080	FBtr0085189	2	1	1	62	3R	23409075	23409093	ACGCCTACTTCTACCTAGG		59	23409119	23409137	GCGTAAGATCGTGTTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wdb	FBgn0027492	FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206	2	7	7	129	3R	23392424	23392442	AAATTCTTAGGACTGCGGG		59	23392249	23392331	ATCCGTTGATGATACTGCC		59	NA	
Drosophila melanogaster	50	CG5938	FBgn0046247	FBtr0113355,FBtr0085159,FBtr0085160	3	3	5	129	3R	23101495	23102020	GCAACATGACGGTATTTGG		59	23102113	23102131	AGGGATTTCTTCAGCACTC		59	NA	
Drosophila melanogaster	50	CG31064	FBgn0051064	FBtr0085125,FBtr0085126,FBtr0085124	3	3	3	104	3R	23059044	23059062	AAGCTATCGGATTACCTGC		59	23058896	23058977	TATCACAACGATCTCATCGC		59	NA	
Drosophila melanogaster	50	CG5882	FBgn0039490	FBtr0085109	2	1	1	81	3R	22945078	22945155	TACTGGATGAAACTTCCAGC		59	22945196	22945217	GTCTTCATCGTAGAAAGTTCCT		59	NA	
Drosophila melanogaster	50	XNP	FBgn0039338	FBtr0084837	2	1	2	65	3R	21306131	21306150	ATTGTCCTTACTGGTACACC		59	21305987	21306005	CACAAACTGGATCATGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fur1	FBgn0004509	FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986	2	5	6	196	3R	21182169	21182187	GAGACGAGGAGACATTCAG		59	21180029	21181956	TGATTTGTGCCATATAGCGA		59	NA	
Drosophila melanogaster	50	CG10550	FBgn0039321	FBtr0084859,FBtr0084857,FBtr0084858	2	3	3	87	3R	21132485	21132505	ATGCTGAAGTATGGATTCTGG		59	21132358	21132376	TCATATTGGCGTCCTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nup358	FBgn0039302	FBtr0084813	1	1	1	86	3R	21078946	21079021	CGAATATGTTTGGTCCTCGA		59	21079070	21079088	CAATGTAAGGTGCTACCGA		59	NA	
Drosophila melanogaster	50	CG11847	FBgn0039281	FBtr0084778	3	1	1	141	3R	20954376	20954466	CAGTAAAGGATGCTCAAGAG		57	20954570	20954588	AGGTAGGGATGAAATTCGA		57	NA	
Drosophila melanogaster	50	RabX4	FBgn0051118	FBtr0084736	1	1	1	94	3R	20652933	20652953	GCAAGTCCAACATCAATATCG		59	20652801	20652820	ATCGTTATCAAAGTTGTCCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17782	FBgn0039195	FBtr0084624	3	1	1	158	3R	20197236	20197386	GGGCTTTAAACTCAAGACTC		58	20197097	20197115	ATATGCGATGATGTCGAGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG6454	FBgn0039187	FBtr0084608,FBtr0084609	3	2	2	81	3R	20175505	20175618	TCAACAAGTTCCCTCAGTG		59	20175662	20175681	TCATTCACCACCAATTCCTC		59	NA	
Drosophila melanogaster	50	CG5515	FBgn0039163	FBtr0084574,FBtr0084575	1	2	2	60	3R	20014283	20014302	CTACAAGGAAGATCAGACCA		58	20014242	20014262	CATATCGCCACAGTATATGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rox8	FBgn0005649	FBtr0084592,FBtr0084591,FBtr0084593,FBtr0084594	3	4	4	84	3R	19871216	19871235	ATATTCCAACTACCAGGCAG		59	19870980	19871169	CCAGTTGACCTTGATTTCC		58	NA	
Drosophila melanogaster	50	KrT95D	FBgn0020647	FBtr0084508,FBtr0084507,FBtr0084506	3	3	3	106	3R	19824628	19824646	GGATAAGGAGCGTGATCTC		59	19824479	19824558	CATCAATGTACACTCGCAG		58	NA	
Drosophila melanogaster	50	CG31140	FBgn0051140	FBtr0084499	1	1	5	123	3R	19799164	19799182	TATCTACTTACCTCCGCAC		57	19799269	19802236	CTTGATCATCTGACACGAG		57	NA	
Drosophila melanogaster	50	Lsd-1	FBgn0039114	FBtr0084456,FBtr0084455,FBtr0084457	1	3	3	166	3R	19591778	19591859	AACATACCCAGAAACCTGG		59	19591989	19592007	TGAAGGCTACCATAGAACG		58	NA	
Drosophila melanogaster	50	Ir	FBgn0039061	FBtr0113273,FBtr0084371	1	2	2	157	3R	19009821	19009839	GTCCACTGTACATGCTCTC		59	19010018	19010036	CACATTCACGAAACGATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp6d4	FBgn0039006	FBtr0084304	1	1	1	81	3R	18524994	18525012	ATTCAGCTGAGGAATACCG		59	18525056	18525135	TAATATGACCATCGGGTGTC		58	NA	
Drosophila melanogaster	50	CG13847	FBgn0038967	FBtr0084296	3	1	1	106	3R	18252446	18252573	CAATTATGTGAAGCAGGAGC		59	18252359	18252377	TCAACTGGTAGATCTGCTG		58	NA	
Drosophila melanogaster	50	CG5380	FBgn0038951	FBtr0084236	2	1	1	60	3R	18192583	18192601	CAAAGGCATCTGGATTAGG		57	18192541	18192561	GTTGAGCTGTATCATGTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	how	FBgn0017397	FBtr0084177	1	1	3	118	3R	17897749	17900174	ATGCTGATCATAGCGTAGG		58	17900256	17900274	TATCTCAATGAAACCCGCC		59	NA	
Drosophila melanogaster	50	slou	FBgn0002941	FBtr0084123	2	1	1	154	3R	17380374	17380394	TAGAGAACATACTGGATCCGA		59	17375448	17380258	ATTCAAATCCTGGGCAGAC		59	NA	
Drosophila melanogaster	50	RpS20	FBgn0019936	FBtr0083964	1	1	1	124	3R	16648270	16648288	CAAAGAACCAGAACTTGCG		59	16648604	16648862	GATTCTCATCTGGAAGCGA		59	NA	
Drosophila melanogaster	50	CG17267	FBgn0038821	FBtr0114503,FBtr0083931	1	2	2	60	3R	16564028	16564047	CTATCCCATCGAGTATGTCC		58	16563987	16564007	AATATAGCGCCTTCTGTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4159	FBgn0038811	FBtr0083944	3	1	1	116	3R	16417448	16417468	CTGCAGAAGGTTAAAGAAACC		59	16417288	16417307	CGTAAAGGACATGATGAAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4662	FBgn0038735	FBtr0083813,FBtr0083814	1	2	2	99	3R	15676654	15676674	GACAAGGACGAATTTCTAGTG		58	15676847	15677566	AAATGCGCTCCATAATTCG		58	NA	
Drosophila melanogaster	50	CG5237	FBgn0038693	FBtr0083742	3	1	1	80	3R	15071131	15071288	CTCAAACTCTACTAACTGTCCT		58	15071072	15071090	GAGTGGGATCTTCAAGAGG		59	NA	
Drosophila melanogaster	50	CG5555	FBgn0038686	FBtr0083746	2	1	1	107	3R	15004415	15004433	CAAGACAGAGGTTTCCGAG		59	15004260	15004347	TGTACATCCTTTAGCTTAGCTG		59	NA	
Drosophila melanogaster	50	ATPsyn-d	FBgn0016120	FBtr0083728,FBtr0083727	3	2	2	92	3R	14921152	14921170	CAATCCTCGATCAACTGGT		59	14921226	14921244	ATAGATGTCCGACTTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14290	FBgn0038662	FBtr0083723	2	1	1	99	3R	14753844	14753931	GGATTACTTTATGAGTACCCAC		57	14753766	14753784	GGAGATGAATTTGGGACTC		57	NA	
Drosophila melanogaster	50	gwl	FBgn0004461	FBtr0083674	2	1	1	91	3R	14575311	14575330	TTTCTACGAGTTCATGACCG		59	14575381	14575472	GCCATTCGATGTTCTTATTCAG		59	NA	
Drosophila melanogaster	50	koko	FBgn0051232	FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629	2	5	5	155	3R	14229544	14229623	TACGATGAGTTCCTCATTGC		59	14229741	14229759	CATCGACCAGTACTCATCG		59	NA	
Drosophila melanogaster	50	SF1	FBgn0025571	FBtr0083456	1	1	1	87	3R	13368197	13369225	AGAATCCGGAAGAAAGATCG		59	13369275	13369293	TTCCTGTAGCGGAATTCAC		59	NA	
Drosophila melanogaster	50	CG5319	FBgn0038501	FBtr0083435	3	1	1	85	3R	13213351	13213437	CTAACGTTGCTAAGGTACCT		59	13213484	13213503	TACTTCTTGGCTGCATAGAG		59	NA	
Drosophila melanogaster	50	Akt1	FBgn0010379	FBtr0083226,FBtr0083228,FBtr0083227	3	3	3	111	3R	11928586	11928604	TTCGACAAGGAGTTTACGG		59	11928679	11928768	CTCCTTGGTAGCTGAACTG		59	NA	
Drosophila melanogaster	50	srp	FBgn0003507	FBtr0083216	1	1	3	130	3R	11826497	11827481	CTAGAAGATTGAGCGCCTC		59	11827575	11827593	GAGCTTATAGTACAGGCCG		59	NA	
Drosophila melanogaster	50	CG14872	FBgn0038346	FBtr0083156	3	1	2	60	3R	11335076	11335097	CTATCTTCAAGTTCTTCACTCG		58	11335037	11335056	TTGATCAGCTCGAAGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5044	FBgn0038326	FBtr0083090,FBtr0083091	3	2	2	97	3R	11183940	11183959	GGGATTCTAGAGAATCTGCA		58	11184283	11184301	AACGTAACCTTCATCGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34316	FBgn0085345	FBtr0112514,FBtr0112515	1	2	2	83	3R	11056745	11056763	CAAATCCTTATACACCGCC		58	11056810	11056894	TTTGTAATGGAGGTTTCGG		57	NA	Nonspecific
Drosophila melanogaster	50	Gyc88E	FBgn0038295	FBtr0110961	1	1	3	80	3R	11015636	11015727	TGCAGTCATGGTCATAGTC		59	11015771	11015789	AGAATGCTGGAAACTCTGG		59	NA	
Drosophila melanogaster	50	Gyc88E	FBgn0038295	FBtr0083028,FBtr0083027,FBtr0110961	3	3	3	116	3R	11013199	11013217	TTCAGCAGAGATCTCATGC		59	11013295	11013377	CTCATCCAACAATCTCATGGA		59	NA	
Drosophila melanogaster	50	Aats-met	FBgn0027083	FBtr0082895	3	1	1	116	3R	10084721	10084741	GTCTGGTTAGATGCTTTAGTC		58	10084558	10084576	ATGGAACTTGAGGATGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9616	FBgn0038214	FBtr0082896	1	1	1	65	3R	10070972	10070990	TTCGAAATGCAAGGAAAGC		59	10070870	10070891	CTCATTCTTATTGGGATACGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sp212	FBgn0053329	FBtr0082899	1	1	1	104	3R	10049440	10049458	TTTCGAATAGCCGTCAGAC		59	10048881	10049372	AACGGTTACAAATTCGCTG		59	NA	
Drosophila melanogaster	50	Art9	FBgn0038188	FBtr0082879	3	1	1	167	3R	9768727	9768745	TAATAGTGTCCGAGTGGGT		59	9768519	9768537	TCACTTCGACAGTCTTACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	2	8	8	284	3R	9504400	9504475	AACACGACGTAAATCAGGA		58	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG32473	FBgn0052473	FBtr0082743	2	1	3	122	3R	9134615	9135198	GCGTACTTTCAGATAATCGC		59	9135283	9135301	GGAATCCCAGATTCTGGAG		59	NA	
Drosophila melanogaster	50	CG7966	FBgn0038115	FBtr0082715	3	1	1	82	3R	8875356	8875445	ATGGGATAAGCAGTTCTATCC		59	8875294	8875312	TTCCTCCATTCACAGTGTC		59	NA	
Drosophila melanogaster	50	CG11670	FBgn0038114	FBtr0113230,FBtr0113231	1	2	2	82	3R	8869501	8869519	AGTCGTAAACACTATCGCT		58	8869562	8869652	GTATAAACACCTGGAAGTTCAC		58	NA	
Drosophila melanogaster	50	CG4115	FBgn0038017	FBtr0082568	3	1	1	93	3R	8186205	8188298	GCGAGAATGTGAAATACATCTG		59	8188352	8188370	CAACCGTTGATGTTTGTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6923	FBgn0037944	FBtr0082432,FBtr0082433	2	2	2	109	3R	7571002	7571087	CTACTTTGGAAACTATTGAGCG		59	7570914	7570932	GAGGTTTAAGCAAATGGCG		59	NA	
Drosophila melanogaster	50	CG5270	FBgn0037897	FBtr0082387	3	1	2	90	3R	7251369	7251444	AGTGGACAAACAGATTCCC		59	7251496	7251516	GATGTATATTACGCGGATCCT		59	NA	
Drosophila melanogaster	50	fau	FBgn0020439	FBtr0082308	3	1	4	64	3R	6599527	6599545	TACAACTACAGCACAGAGC		59	6599481	6599499	GAAGAATAGCTGTAGCCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12817	FBgn0037798	FBtr0082243,FBtr0110952,FBtr0110953	1	3	3	120	3R	6050095	6050113	ATGATTTGAGTGAGGAGGA		57	6049685	6049703	AATTGCCTTCACGAATTCC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG8500	FBgn0037754	FBtr0082139	1	1	1	129	3R	5611792	5611867	ACAGACAGGTCATAAGCTG		58	5611960	5611978	GAGTAGACCAGGATGAAGG		58	NA	
Drosophila melanogaster	50	Rpt3R	FBgn0037742	FBtr0082165	2	1	2	106	3R	5581288	5581354	TACAAGCAAATTGGCATCG		59	5581200	5581218	GATGCAGTTGTATGATGGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Fps85D	FBgn0000723	FBtr0082053,FBtr0082051	3	2	4	109	3R	5195422	5198485	AACAGCAGATATCGCTCTC		59	5195331	5195351	GAAGTCACCATCGTTATTCAG		58	NA	
Drosophila melanogaster	50	CG11776	FBgn0037631	FBtr0081935	3	1	1	82	3R	4622475	4622494	TCCAAAGACTGACTAACGAG		59	4619075	4622433	CTTTATTTCCTCTAACTGGGTC		58	NA	
Drosophila melanogaster	50	Pif1B	FBgn0046874	FBtr0091717,FBtr0091716	2	2	2	61	3R	4600939	4600957	TTGATATGCATGCCATGGA		59	4600828	4600915	CTTAAGGTGCTTTGGTTTCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Cenp-C	FBgn0086697	FBtr0089973	3	1	1	82	3R	4393444	4393534	TAAATACTACCGGTATTCGGAG		58	4393577	4393595	CTTGCTAGGATCCATGGTG		59	NA	
Drosophila melanogaster	50	Coq2	FBgn0037574	FBtr0081858	1	1	1	225	3R	4141339	4141357	CTACGACACGATATACGCC		59	4141074	4141150	GAGGGAATAGATCTGCTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11672	FBgn0037563	FBtr0081865	1	1	1	60	3R	4115981	4115999	TATTGCCGGTAACATTGAG		57	4115939	4115958	GATCACATCACTTAGTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18749	FBgn0042182	FBtr0100545	3	1	1	80	3R	4072981	4073000	TTCGCTGATTAATTACGGCT		59	4073043	4073118	TTAAGCCTGGTCGTATTCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG7878	FBgn0037549	FBtr0113205	1	1	1	79	3R	3949762	3949780	AGAAGTACTCCTTTCGTGG		58	3949885	3949903	CTCCAAGTCGGATATCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10445	FBgn0037531	FBtr0081762	3	1	1	179	3R	3743510	3743589	CTAATGATTGGGATGCTGC		58	3743349	3743369	GCCATCTCTTCTAGTACTGTC		59	NA	
Drosophila melanogaster	50	Rtnl2	FBgn0015831	FBtr0081548	3	1	1	60	3R	3355237	3355257	TCTTACGTTTCTATCCTCACC		58	3355197	3355215	GCCAGATAAAGAGTCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi10	FBgn0037417	FBtr0078600,FBtr0078601	2	2	2	158	3R	2092757	2092839	ATATCATTGCTGGGCAGTC		59	2092961	2092979	CTCTACCTGATCCAACTGC		59	NA	
Drosophila melanogaster	50	CG2100	FBgn0037369	FBtr0078724	1	1	1	60	3R	1560529	1560547	ATGGATTCCCAACGTACTG		59	1560487	1560507	CTTCATTCGCTTCACTTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16708	FBgn0037315	FBtr0078804,FBtr0078803	3	2	2	123	3R	1185797	1185815	CTCCCGTTACAGTCATCTG		59	1185264	1185711	CAAATTGCGAATATCACCAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG1115	FBgn0037299	FBtr0078777	3	1	1	90	3R	1052508	1052526	CCAAATACTTCTCTGCCAG		57	1052580	1052598	GACCCATGATTGGGTAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31530	FBgn0051530	FBtr0078882	1	1	1	85	3R	578308	578532	ATCTATCTGTGGCAGTGGA		59	578241	578259	TCCAGCAAGATCTTCTTGG		59	NA	
Drosophila melanogaster	50	CG31534	FBgn0051534	FBtr0078866	3	1	2	152	3R	535932	535950	TGGCAACAACATCTACCAG		59	536066	536347	CAGCCCAGATCTAATTCGT		59	NA	
Drosophila melanogaster	50	CG14650	FBgn0037252	FBtr0078926	3	1	1	171	3R	265863	265950	AATACCATAAGGTGCAGCA		58	266154	266172	TTAGCGCCAAGTATTTCCA		59	NA	
Drosophila melanogaster	50	eIF3-S10	FBgn0037249	FBtr0111110	1	1	2	98	3R	258422	258440	GAAGAACCTGACGAAGGAC		59	257836	258362	AAATAGATATCTGGATGGGCC		59	NA	
Drosophila melanogaster	50	CG14646	FBgn0037241	FBtr0078919	1	1	1	60	3R	216954	216974	TTAGGAATCTAGAGAACCGAG		58	216995	217014	TGTAACTGAATGTTGGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9779	FBgn0037231	FBtr0078958	1	1	1	133	3R	136072	136145	AATCAGCTATCCACCTTGC		59	135957	135977	GCCTTCATCATTTCCTTTGAC		59	NA	
Drosophila melanogaster	50	CG14639	FBgn0037224	FBtr0078975	2	1	1	65	3R	72901	72920	ATACAAGTACCAACCTCAGC		59	72948	72966	GAAATGGGTGTCAGAGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14641	FBgn0037220	FBtr0078985	3	1	1	60	3R	56786	56804	GGGTGTCAATTTGGATTCC		58	56744	56763	ACTTGGATACGGTACTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40053	FBgn0058053	FBtr0111154	3	1	1	107	3L	24003641	24003662	CACCATAAAGCTGTTATTGAGG		59	24003555	24003573	CATTTCCTATCGATCGACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32461	FBgn0052461	FBtr0078567	2	1	1	60	3L	22948281	22948300	GACTTTACACCGAACTTGAC		58	22948240	22948258	TCATATGGCGTCATAGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arf79F	FBgn0010348	FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572	3	6	7	86	3L	22862823	22862842	ATTAGCTTTACAGTGTGGGA		58	22862563	22862777	GATAAGACCTTGTGTATTCTGG		58	NA	
Drosophila melanogaster	50	SPoCk	FBgn0052451	FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532	2	4	4	60	3L	22771883	22771901	AAATGGTGACTGGAGATGC		59	22776520	22776538	TCGATACCGATGAGATTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11247	FBgn0037120	FBtr0113184,FBtr0078459,FBtr0078458	2	3	3	150	3L	21718589	21718667	CTATCAGTGTAGGATCTGCC		59	21718458	21718476	CATGTGGTTCTTTAGGTGC		58	NA	
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234	2	10	10	73	3L	20826943	20826961	CAAATGCGTCAAACTGGAC		59	20827130	20827148	TGTTGCGTTTGAGTATGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234	3	10	10	74	3L	20826941	20826959	CTCAAATGCGTCAAACTGG		59	20827129	20827147	GTTGCGTTTGAGTATGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7323	FBgn0036943	FBtr0074863	2	1	1	84	3L	20146428	20146579	CATAATGACAGGCAACCAC		58	20146362	20146380	GATAATGCCCATCTTGGTC		57	NA	
Drosophila melanogaster	50	CG9231	FBgn0036887	FBtr0074972	3	1	1	61	3L	19578681	19578699	ATTATGGTGTACAGTGGCA		58	19578638	19578656	AGATTCATCTTTGTGACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32204	FBgn0052204	FBtr0113429	1	1	1	80	3L	18923741	18923760	GTACTGATATACTCGTGGCG		59	18923240	18923700	TATTTGCACACCGTAGTAGAC		59	NA	
Drosophila melanogaster	50	Tsp74F	FBgn0036769	FBtr0075154,FBtr0075155	3	2	2	94	3L	17886316	17886412	CTTTGTGATATTCGTGGGTG		58	17886241	17886259	GATTTGTACCGAGCAACTC		58	NA	
Drosophila melanogaster	50	Eip74EF	FBgn0000567	FBtr0075202,FBtr0075203	3	2	4	63	3L	17591956	17591974	CCAGATAACGATGGTCGTC		59	17591559	17591929	TAGAATCATCGGCTATGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7630	FBgn0040793	FBtr0075217	1	1	1	220	3L	17418703	17418721	TAAGCACATTGTCAAGCAG		58	17419173	17419251	CAGAAGATTTCACGAATCCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	Or74a	FBgn0036709	FBtr0075247	1	1	1	61	3L	17320947	17320965	AGTTAGTCTCACTGCTGTG		58	17320847	17320865	TTAGGAACGTGAAGTAGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13035	FBgn0036628	FBtr0075414,FBtr0075415	2	2	2	97	3L	16391793	16391814	TTTGGTCATATCCTGTATTCCC		59	16391125	16391735	AGGTGAAGTTCTTGTCCTG		59	NA	
Drosophila melanogaster	50	CG4729	FBgn0036623	FBtr0075417,FBtr0075419,FBtr0075418	2	3	4	82	3L	16377075	16377094	TATCAAGCCCATAGACAAGC		59	16376952	16377031	ACACGAAGATAAGTTGGGAG		59	NA	
Drosophila melanogaster	50	CG4982	FBgn0036598	FBtr0075469	3	1	1	61	3L	16294677	16294695	GTATTCGCTGTCCTGATCC		59	16294720	16294738	TATTCCACGTGCTCATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PDCD-5	FBgn0036580	FBtr0075483	1	1	1	176	3L	16224506	16224581	GGCACGACTTAATACCCTC		59	16224348	16224366	TATTTCACGGAGGACTTGC		59	NA	
Drosophila melanogaster	50	CG6244	FBgn0036531	FBtr0075502	2	1	1	84	3L	15801587	15801605	TTCGATTGTCCATTCTGCA		59	15801705	15801724	CGGTACAGGTAATTCTTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7255	FBgn0036493	FBtr0110881,FBtr0100360	1	2	3	131	3L	15301821	15301841	TTTAGAGTTCCCTTTGTACCG		59	15301932	15302037	AAGAAATACGGGTATACCCAC		59	NA	
Drosophila melanogaster	50	CG12316	FBgn0036483	FBtr0075651,FBtr0075652	1	2	2	101	3L	15128060	15128080	GACCATATTGAATCATCTGCG		59	15127562	15127997	GAACTGAGAACCACTTCGT		59	NA	
Drosophila melanogaster	50	CG13460	FBgn0036471	FBtr0114510	2	1	1	60	3L	15054441	15054460	GATCCTATGGATCCTATGGC		58	15054400	15054421	TTATTATTCCAGTAGCTGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL39	FBgn0036462	FBtr0075672	3	1	1	96	3L	14991963	14991981	TTGCAGCTTTATGTTGGGA		59	14991712	14991905	ACCTGATTTGATATTGGGTCC		59	NA	
Drosophila melanogaster	50	CG4613	FBgn0036427	FBtr0075725	1	1	1	143	3L	14513252	14513270	GTACAGGTCCATGATCGTG		59	14513056	14513074	TAGCCAAAGGACACAACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10743	FBgn0036376	FBtr0075814,FBtr0075813	1	2	2	102	3L	13507881	13507899	CTGCTATGAGGACAATTGC		58	13508024	13508044	CATCTTTAGGTTTAGCTCTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34429	FBgn0085458	FBtr0112730	2	1	1	145	3L	13056703	13056721	GAGTCTGTGTCCTGAAGAG		59	13056882	13056900	CAGGTAGTCATTGTCCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	eIF-2beta	FBgn0004926	FBtr0075968	3	1	1	194	3L	12518773	12519100	AAGACAAAGAGAACGACGAG		59	12518598	12518616	CAAAGGAGGTCTTCTTGGT		59	NA	
Drosophila melanogaster	50	Pop2	FBgn0036239	FBtr0076058,FBtr0076059,FBtr0076060	2	3	3	80	3L	11993787	11993865	TCAAGTTTAACCTGAGCGAG		59	11993726	11993745	GCTTCTTGAACTGAATTCCG		59	NA	
Drosophila melanogaster	50	viaf	FBgn0036237	FBtr0076062	1	1	1	60	3L	11985631	11985651	GATTATGTCAACGAGGTAACC		58	11985591	11985609	CATACAGGTGGAGTACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	obst-G	FBgn0036228	FBtr0076066	2	1	1	60	3L	11946338	11946359	TACTTCAAGAAAGTACTCTGGC		59	11946244	11946262	CATAAGGACGTCTTGAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7257	FBgn0036224	FBtr0076040	1	1	1	60	3L	11935259	11935277	CCAATTACCGTACCAAGCT		59	11935301	11935319	CGCAAAGCTTTCAATTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	chrb	FBgn0036165	FBtr0076093	3	1	1	65	3L	11487795	11487814	CTCTTCATTGAGTTCGAGAG		57	11487953	11487973	CGGATCCACTTTAAAGTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6199	FBgn0036147	FBtr0076187,FBtr0076188	3	2	2	82	3L	11195966	11196054	TTAGACTTGGAAGAGACAAACC		59	11195905	11195923	AGAAACTGGTCGAAGAAGG		59	NA	
Drosophila melanogaster	50	Alg10	FBgn0052076	FBtr0076217	3	1	1	201	3L	11158742	11158761	GAATATCGTGTGGGTATGCA		59	11158989	11159007	GATCGAAGCGTAGAAACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14149	FBgn0036105	FBtr0076269	3	1	1	60	3L	10872509	10872532	CTCTATACTAGGTTTCACAGACAG		59	10872551	10872569	CTCCAGACCATCGATTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpr10	FBgn0052057	FBtr0076310,FBtr0076308,FBtr0076309	1	3	3	82	3L	10143594	10144086	ATCAGGATAAGGTGCTCAG		58	10143530	10143548	AATGGATTTGGTCTCCTCC		58	NA	
Drosophila melanogaster	50	dpr10	FBgn0052057	FBtr0076310,FBtr0076308,FBtr0076309	2	3	3	83	3L	10143594	10144087	CATCAGGATAAGGTGCTCAG		59	10143530	10143548	AATGGATTTGGTCTCCTCC		58	NA	
Drosophila melanogaster	50	nudE	FBgn0036059	FBtr0114600,FBtr0113158,FBtr0076344,FBtr0113159	1	4	4	98	3L	9893399	9893533	CTCTCAAGCTCAAGTTGGA		59	9893595	9893613	GGTACACCTTCATGGTGTC		59	NA	
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385	3	8	8	114	3L	9825956	9826035	GAGTTAACCGGGACTACAC		59	9826112	9826131	AGTCTTTCCCAAACTTAGCC		59	NA	InUTR
Drosophila melanogaster	50	CG3306	FBgn0036016	FBtr0076380	2	1	1	60	3L	9594753	9594771	GGATCCAGATACGTTGGTC		59	9594794	9594813	AAATGTAGACACCCATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34272	FBgn0085301	FBtr0112467	1	1	1	60	3L	9588220	9588241	GATGATTTATGCGATGAGTTCC		59	9588262	9588280	TCAGCTTTGTCCAAATGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF-4E	FBgn0015218	FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487	3	7	7	96	3L	9393614	9393696	AAGAAGAACATTCGTCCCA		58	9393536	9393554	TATCCAGATCGGTCTTGGA		59	NA	
Drosophila melanogaster	50	CG5653	FBgn0035943	FBtr0076559	3	1	1	60	3L	8958225	8958243	GTTATCGTGGAGTTATGGC		57	8958183	8958201	ACAGGAGACTCTAGATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Prm	FBgn0003149	FBtr0076593,FBtr0076594	3	2	4	144	3L	8732791	8732809	ATCATCCTGTACGAGACCA		59	8732580	8732684	CCTCATGAAGATCATCTCCC		59	NA	
Drosophila melanogaster	50	ergic53	FBgn0035909	FBtr0076626,FBtr0076625	3	2	2	124	3L	8529702	8529720	CATGAATCAGGTCAAGCAG		58	8530054	8530073	TTACGCTTAGGAACAATGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7066	FBgn0035869	FBtr0076707	1	1	1	65	3L	8298022	8298040	GAAATTGTTGTTCCTGGCC		59	8298122	8298140	ATAGTCGCATCTAGACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tsp66A	FBgn0035786	FBtr0076860	2	1	2	82	3L	7459767	7460632	AATTCTGTTCGAACACATGC		59	7460677	7460695	CCATTAGGGCATTTACGGT		59	NA	
Drosophila melanogaster	50	sphinx1	FBgn0052383	FBtr0076865	1	1	1	60	3L	7431774	7431794	GTCAGCGATCATATAAAGTGG		58	7431734	7431753	TGGAATACTCACAGAATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lcp65Ae	FBgn0020640	FBtr0077056	2	1	1	88	3L	6131091	6131109	TTGGAATCCGATGTTGGAC		59	6130961	6130980	TACTTCAACTGTCCCTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lcp65Af	FBgn0020639	FBtr0077057	1	1	1	83	3L	6129608	6129626	GTTGGAACTGATGAGGAGG		59	6129543	6129561	GTAGGCGATGGAGTAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32412	FBgn0052412	FBtr0077080	2	1	1	92	3L	5894960	5894978	GTGCCATTCTGTTGAACAC		59	5894651	5894907	AGAATATGAGCATAAGTCCCAC		59	NA	
Drosophila melanogaster	50	Blimp-1	FBgn0035625	FBtr0077089	2	1	1	90	3L	5637721	5637844	CCAAATGTTAAGACTGAAGGAG		58	5637894	5637913	AATTAGAGGTTGGAATGCCT		59	NA	
Drosophila melanogaster	50	CG10672	FBgn0035588	FBtr0077179	3	1	1	145	3L	5133872	5133952	TGATGCCTTTGAGCTACTG		59	5133745	5133764	CTTTCGAGAACTTTGTCCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG15023	FBgn0035548	FBtr0073332	3	1	1	72	3L	4461104	4461122	TTGTGATTACCTCGACGAC		59	4461050	4461068	TAAGTGGGTACTGGTTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS6	FBgn0035534	FBtr0073288	1	1	1	70	3L	4364986	4365004	AAGATCGCAGACTTGAAGG		59	4365038	4365056	TCCACCTTGAAGATGTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17746	FBgn0035425	FBtr0073094,FBtr0073093	2	2	2	93	3L	3238653	3238671	CACAAGTACGTTCTCAAGC		58	3238039	3238057	TGCGTAGCATAACGTAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	msn	FBgn0010909	FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956	2	5	5	103	3L	2556719	2556800	GCAATAGAGATACGTTCCGT		59	2556635	2556654	AATACTTTGTCGTTTCGCTC		58	NA	
Drosophila melanogaster	50	CG5690	FBgn0035295	FBtr0072842	3	1	1	109	3L	1949143	1949162	TGCTGCAAGAATATCATCAG		58	1949233	1949314	GAGATTGGTCTCAGTTTCAG		57	NA	
Drosophila melanogaster	50	Aprt	FBgn0000109	FBtr0089421,FBtr0089420	3	2	2	82	3L	1884242	1884334	GAGTACGGTATTGACACCT		58	1884178	1884196	GCTAGTAGATCGTCAACGA		58	NA	InUTR
Drosophila melanogaster	50	CG7971	FBgn0035253	FBtr0072808	3	1	5	144	3L	1661261	1661279	GATCATGTCTCCAAGACGG		59	1661074	1661093	GGTTTCAAGTTTCGGATTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG9192	FBgn0035193	FBtr0072734	2	1	1	60	3L	1237926	1237945	GTTTAATCCATACGGTGGTC		58	1237885	1237904	GTTATAGCCTCCAAGTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12030	FBgn0035147	FBtr0072556	2	1	1	137	3L	649360	649380	GTCAACTTCTATAGAGTGGAC		57	650291	650310	GTAGTACTGCAAAGGTATGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7047	FBgn0035103	FBtr0072535,FBtr0072534,FBtr0072536	2	3	3	135	3L	177251	177269	GATAAAGTGCAGAGTGTCC		57	177068	177152	ATACTCGATGGTCTCAGTG		58	NA	
Drosophila melanogaster	50	Atf-2	FBgn0050420	FBtr0072381,FBtr0072382	2	2	3	80	2R	20766554	20766574	GTACATAGTGGCCCTAATAGC		59	20766614	20766695	TTATGGAACCAAGTTACTCCG		59	NA	
Drosophila melanogaster	50	CG33988	FBgn0053988	FBtr0100033	3	1	1	214	2R	20588051	20588137	TACAGAAGAGATCAACGCG		59	20587794	20587812	GTAGCTAGACTTCTCCAGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG4589	FBgn0019886	FBtr0072347,FBtr0072348,FBtr0072349	3	3	3	82	2R	20398309	20398389	CGATATTCGTAAGGTGTTGGA		59	20398247	20398265	GCAGACTGATGAGTTCCTC		59	NA	
Drosophila melanogaster	50	CG13569	FBgn0034979	FBtr0072284	1	1	2	125	2R	20013241	20013260	CCTATGTCTACAAGACTGGA		57	20013078	20013153	AACTACGCTCTTACTCCAG		58	NA	InUTR
Drosophila melanogaster	50	Unc-89	FBgn0053519	FBtr0113464	3	1	2	81	2R	19900368	19900445	AAAGTCAAGATGCTTTGTGC		59	19900306	19900327	GAACTCTAGTATATCGATGGGC		59	NA	
Drosophila melanogaster	50	CG3105	FBgn0034950	FBtr0072160	2	1	1	81	2R	19879127	19879205	CGTTAATGAAGCCAAGCAC		59	19879250	19879268	CTCGTGGTTACTCACTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	egl	FBgn0000562	FBtr0114586	2	1	1	107	2R	19623914	19623932	TATGGATCTGACAGAGGAC		57	19623763	19623843	TCACTTTGATCTTTGCTGG		57	NA	
Drosophila melanogaster	50	CG4019	FBgn0034885	FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103	1	4	4	213	2R	19495764	19495782	TCGAGTTCGTAATCACCTC		58	19495489	19495507	TAGATCCAGTTGCTCTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30414	FBgn0050414	FBtr0072032	2	1	1	184	2R	19272381	19272400	TAAACTCAGGAGAATACGCT		58	19272161	19272234	GGACGTAGTCTGAGTACTG		58	NA	
Drosophila melanogaster	50	CG30193	FBgn0050193	FBtr0071948,FBtr0071949,FBtr0071946,FBtr0071944	1	4	7	80	2R	18813126	18814633	GGCTTATAATATTGTTCTGCGG		59	18814673	18814692	ATTCCTTGACATCCTTGGTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG30187	FBgn0050187	FBtr0071997	1	1	1	80	2R	18804775	18805208	GCACTTATTCTAGACCAACAG		58	18804715	18804735	TATAGTTCCATTATCGGGAGC		58	NA	
Drosophila melanogaster	50	CG9825	FBgn0034783	FBtr0071893	3	1	1	90	2R	18725371	18725446	CGAACTTTCCGGAATACGA		59	18725500	18725518	CCAAGGAATTGCGTTAGGA		59	NA	
Drosophila melanogaster	50	Obp58c	FBgn0034769	FBtr0071920	2	1	1	96	2R	18593778	18593796	TGTTCACTGAAAGGTTTCC		57	18593640	18593658	ATGGAGGTATTCTCTTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30401	FBgn0050401	FBtr0071731	1	1	1	60	2R	17873721	17873739	ACATTAATGGTCATCCGGT		58	17873679	17873697	GATGTAGCTGCTGAATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089710,FBtr0089703	1	2	9	129	2R	17399440	17399460	CCGTCTAGATCCTACAAACTC		59	17399675	17399908	GAAGTACTTGACGTAGCCC		59	NA	
Drosophila melanogaster	50	Fkbp13	FBgn0010470	FBtr0071702,FBtr0071703	3	2	2	70	2R	17375559	17375577	AATGTGTTCAAGGAGATCG		57	17375334	17375526	TTTAGATACTCGCTGACCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Sara	FBgn0026369	FBtr0071641,FBtr0071642	2	2	2	116	2R	17373768	17373847	TTATTAAGTGCGAGGACTGG		59	17373926	17373944	AAAGATCGAGAAGTGGCAG		59	NA	
Drosophila melanogaster	50	CG30394	FBgn0050394	FBtr0071614,FBtr0071613	2	2	2	124	2R	17209252	17209325	TACAGAAAGGGTCATACGG		58	17209146	17209164	ATTATAAGCTCCACGGAGG		58	NA	
Drosophila melanogaster	50	CG34396	FBgn0085425	FBtr0112645	1	1	2	119	2R	16987563	16987730	AACTATAGGTTACGGCCAC		58	16987813	16987831	AATAACTTGCCCAGATCGG		59	NA	
Drosophila melanogaster	50	Obp57a	FBgn0043535	FBtr0086294	2	1	1	60	2R	16393084	16393103	TGCCTACGTCTATAAATTGG		57	16393124	16393144	GAACTTGATGACTGAATGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10737	FBgn0034420	FBtr0086587,FBtr0100282	1	2	5	81	2R	15064177	15064195	GATTAGTCACAAGCAGTGC		58	15064237	15065333	GAGTTTAGTTAGTTCCATGGAG		58	NA	
Drosophila melanogaster	50	CG15109	FBgn0034416	FBtr0086576,FBtr0100137,FBtr0086575	2	3	4	145	2R	14947119	14947138	ACAAGATGAACTACTTGCTG		57	14947337	14947355	CAGTGAAGCAGTATTGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15080	FBgn0034391	FBtr0086613	1	1	1	128	2R	14680407	14680482	AAAGAATCCACCGTGTCTC		59	14680574	14680592	GAAGCTGTTCGTGTTTGAG		59	NA	
Drosophila melanogaster	50	CG15086	FBgn0034374	FBtr0086651,FBtr0086649,FBtr0086650,FBtr0086648	1	4	4	60	2R	14567640	14567659	CAGGATCCTTACTACCAACG		59	14567543	14567563	ATGATCCGTAGTTCTGATACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10924	FBgn0034356	FBtr0086699,FBtr0113093	3	2	2	60	2R	14421136	14421156	GGATGAAGTTCGATAACAAGG		58	14421178	14421196	CCAAAGAATCCATTCTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED9	FBgn0034311	FBtr0086748,FBtr0086747	3	2	2	119	2R	14055534	14055552	GAGAGCTATCCCATGAGAC		58	14055635	14055722	AACGAAGGATTTGAAACGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5756	FBgn0034301	FBtr0086786	3	1	2	106	2R	13991256	13991513	GATTTACGCACACGTTTCC		59	13991168	13991186	CAAAGTTGGTGCTATCAGC		59	NA	
Drosophila melanogaster	50	CG4847	FBgn0034229	FBtr0086937,FBtr0086934,FBtr0086933	3	3	5	199	2R	13400212	13400290	GACTTCTTGAGCCAATCTG		58	13400453	13400471	TTCAGACCGGTCAATTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6429	FBgn0046999	FBtr0087044	1	1	1	60	2R	12760946	12760967	TTATATGGTGAAGTACGGACAG		59	12760987	12761006	ATAATCGTAACAGTCCTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34459	FBgn0085488	FBtr0112765	2	1	1	71	2R	12713706	12713724	GAAGTCCAGGAAGCTAGTG		59	12713759	12713777	ATTCATATTGGCCTCCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hmgs	FBgn0010611	FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146	1	5	5	60	2R	12227687	12227705	CAGCAGAAGGATACTTCCA		58	12227727	12227747	GGAATAGGATAGCATCGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rho1	FBgn0014020	FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216	3	7	7	83	2R	11993292	11993372	ACACAATTCGGGATCTAGC		59	11993419	11993437	AGGCATTAATCTTCTCGGC		59	NA	
Drosophila melanogaster	50	Dg	FBgn0034072	FBtr0087258,FBtr0087257,FBtr0087256	1	3	3	100	2R	11972593	11972678	TTTATGGCCTACCTCTGGA		59	11972511	11972529	ACTTATCTCCACGGTTTCC		58	NA	
Drosophila melanogaster	50	CG8299	FBgn0034052	FBtr0087291	3	1	1	80	2R	11828680	11828698	TGTTAAGGTCAGCAAACTG		57	11828618	11828636	CGAGTGATGATCAAACCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sli	FBgn0003425	FBtr0087304,FBtr0087302,FBtr0112831	3	3	5	138	2R	11773781	11773799	GACCGTGATATACGAGACG		59	11772978	11773607	ATTGTTGGAGATGTCCAGTC		59	NA	
Drosophila melanogaster	50	kn	FBgn0001319	FBtr0112810	2	1	3	100	2R	10681341	10685773	GTTGACCAGAGCAATTTGG		59	10681259	10681278	TATAAGGCGATCACGAAGTG		59	NA	
Drosophila melanogaster	50	Sec61beta	FBgn0010638	FBtr0087498	2	1	1	74	2R	10506666	10506747	GTATCAAAGTTGGTCCCGT		59	10506785	10506803	AAATGTGCAGCATGAAGAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG8613	FBgn0033924	FBtr0087546	2	1	1	81	2R	10241976	10242051	AAGAATGCATCGCAAATCG		59	10242094	10242114	GTGTAGCTTTGTAGTAGTCCA		59	NA	
Drosophila melanogaster	50	Ih	FBgn0028428	FBtr0100370,FBtr0100369,FBtr0100371	3	3	4	107	2R	10179873	10184210	GGGAGGAGGTCTATTTCCT		59	10184281	10184299	CTAAGAACTGCAAGCAACC		59	NA	
Drosophila melanogaster	50	CG6145	FBgn0033853	FBtr0087687,FBtr0087685,FBtr0087686	3	3	3	60	2R	9426355	9426491	GCTAGTGACCTTTAAAGATGG		58	9426315	9426334	GCAGACGATAAAGTCAATCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG6145	FBgn0033853	FBtr0087687,FBtr0087685,FBtr0087686	1	3	3	60	2R	9426355	9426492	AGCTAGTGACCTTTAAAGATGG		59	9426316	9426335	CAGACGATAAAGTCAATCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32843	FBgn0052843	FBtr0087755	1	1	1	88	2R	9162690	9162708	TGAATCTGATCTCCGAGGT		59	9161475	9162641	CTTCAGGGATTTGAAATAACCC		59	NA	
Drosophila melanogaster	50	CG17041	FBgn0033822	FBtr0087749,FBtr0087751,FBtr0113080,FBtr0087750	3	4	4	222	2R	9151042	9151060	ATAATGTGGCAAGACCCTC		59	9151380	9151398	TGTTCTCAATGGTGTTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Or49b	FBgn0028963	FBtr0087781	3	1	1	97	2R	8731548	8731631	CTTTATGCTGATTATCGTCAGC		59	8731689	8731707	CATACCAATAGAGGGCCAG		59	NA	
Drosophila melanogaster	50	sca	FBgn0003326	FBtr0087855,FBtr0087856	3	2	2	158	2R	8687287	8687506	AAGAATAAGCTCACCCACC		59	8687628	8687646	GATAATGGCCTCGTACTGG		59	NA	Nonspecific
Drosophila melanogaster	50	Sin3A	FBgn0022764	FBtr0087887,FBtr0087889,FBtr0087890,FBtr0087888	1	4	4	81	2R	8467283	8467301	CTCGAATACGTTCGAGGAC		59	8467118	8467238	GGAGACAACCTTATCCAGC		59	NA	
Drosophila melanogaster	50	CG30049	FBgn0050049	FBtr0087906	2	1	1	80	2R	8243985	8244003	GAGGAGAATCCTCTACAGG		57	8244046	8244114	CAAATTGATAACTGCCTTGC		57	NA	
Drosophila melanogaster	50	CG8841	FBgn0033713	FBtr0087964,FBtr0087965	2	2	3	85	2R	8212163	8212182	CATACTGTTGCTCCTATCGG		59	8212027	8212045	CAGGTATATCCATGGGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13195	FBgn0033648	FBtr0088080	2	1	1	60	2R	7589872	7589890	GGACTCAAGGTCTTAACGA		58	7589830	7589849	TTATTGGAGATAAGAAGGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34228	FBgn0085257	FBtr0112421	1	1	1	60	2R	7539685	7539704	AAGTTTGAATACAGATGCCG		58	7539727	7539745	TTCCAGTACGGGACTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	etaTry	FBgn0011554	FBtr0088163	1	1	1	60	2R	7228564	7228583	ACTATGGATAACGACATTGC		57	7228523	7228541	TAAAGCTATCCAAGGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr47Ef	FBgn0033603	FBtr0088186	1	1	2	204	2R	7157112	7157130	ATAGCCAAATCTCTGGCTG		59	7156783	7156880	CTCCTGATCCATATCCACC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG34225	FBgn0085254	FBtr0112418	3	1	1	60	2R	7133203	7133222	CAGTGGATGGAGTAATTCCT		58	7133241	7133263	CTACCACCAGTAACTACTATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13226	FBgn0033594	FBtr0088108	3	1	1	60	2R	7132088	7132111	CTACGGTTATAACTATGGATACCC		59	7132130	7132148	TCTGTAGTAGTTCTGCCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34223	FBgn0085252	FBtr0112416	3	1	1	72	2R	7123572	7123592	GTCTTTAGTCGTCTTCAACCT		59	7123626	7123644	TGGTGGTAGTTATACCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30490	FBgn0050490	FBtr0088209	1	1	1	60	2R	7003948	7003966	GCATCAACAAGCTTACTGG		59	7003906	7003926	CGATGGGAATAATGATCTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pfk	FBgn0003071	FBtr0088421	3	1	3	109	2R	6000666	6001639	GTCATTGCGGTTACTTAGC		58	6001712	6001730	CTTGACACAGATCTCGTCC		59	NA	
Drosophila melanogaster	50	egr	FBgn0033483	FBtr0088405	2	1	2	99	2R	5970831	5970927	GGTGAATCTCTTCTTTCAGC		58	5970989	5971087	CATGGTAGCCCATACTTCC		59	NA	
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	1	9	9	87	2R	5738879	5738966	CCGTTAAGGAGATCCATGTC		59	5738811	5738829	ATATCGATGACAGTTCCGG		58	NA	
Drosophila melanogaster	50	CG1814	FBgn0033426	FBtr0088523,FBtr0088521,FBtr0088522	1	3	3	80	2R	5468497	5468576	AATCTACTACGAGGGTTCG		58	5468620	5468638	TGATCTCCGAAATAGAGCA		57	NA	
Drosophila melanogaster	50	Cyp4p1	FBgn0015037	FBtr0088592	3	1	1	96	2R	5128337	5128421	CAGTATTTGTGAAACCGCC		59	5128478	5128499	GAAGCATTCTTCAATCTGACTG		59	NA	
Drosophila melanogaster	50	CG8247	FBgn0033348	FBtr0088677	1	1	1	80	2R	4808338	4808356	AAGCTACCCACAAATACCT		58	4808213	4808296	CCGTAAACTTTCTCTTCTCAG		58	NA	
Drosophila melanogaster	50	PGRP-SC1a	FBgn0043576	FBtr0088707	1	1	1	165	2R	4597331	4597349	GTCTATGTCGTCTCCAAGG		59	4597478	4597496	CCATGTGGTAGTTCTGGAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30355	FBgn0050355	FBtr0088726	1	1	1	60	2R	4566860	4566880	AGATCAACCGAAAGAGATGAC		59	4566820	4566839	TATCATCCACAACATTGCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30364	FBgn0050364	FBtr0088772	3	1	1	60	2R	4249567	4249587	CAAGAGAATTGTGCTTATGCC		59	4249527	4249548	GTGAATAGTTCGACAAGTATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mlh1	FBgn0011659	FBtr0088790	2	1	1	60	2R	4058505	4058524	CGATGAGGTTTACAAGTTCG		58	4058547	4058565	TTTGGCCGAATAGTTAACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Odc1	FBgn0013307	FBtr0088863	3	1	1	90	2R	3893656	3893674	GTACTATCTGAATGACGGC		57	3893728	3893876	TGCATTGTCCAGATAATGC		58	NA	
Drosophila melanogaster	50	CG1600	FBgn0033188	FBtr0088958,FBtr0088957,FBtr0088956	1	3	3	192	2R	3414718	3414736	TATCACTTTGCCACAACTG		57	3414477	3414495	CAAAGTCAATGACCACGTC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995	1	9	9	157	2R	3355133	3355208	AGAAGTTGTCATCAGCTCG		59	3354994	3355012	GTAGTAGTTGGTCAGCACC		59	NA	Nonspecific
Drosophila melanogaster	50	CG33914	FBgn0053914	FBtr0091918	2	1	1	79	2R	2924676	2924694	ACACAAACATGAACCACAC		58	2924554	2924572	GGAGACTTCGGTATTTGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9455	FBgn0033113	FBtr0086162	2	1	1	105	2R	2770259	2770277	CTCTTTACCTCGCAAAGTG		58	2770345	2770433	TCTTCATGAAACTGACTGCT		59	NA	
Drosophila melanogaster	50	koi	FBgn0033107	FBtr0086159	2	1	1	82	2R	2704200	2704218	GAATAGAATCAGCTCCTCG		57	2704327	2704345	GTAATCGCCGAACAATACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15234	FBgn0040673	FBtr0089698	3	1	1	150	2R	2495743	2495761	AATTAACGCATTGGACGTC		58	2495552	2495570	CTTCAAGTTTCTGCAACGA		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG3107	FBgn0033005	FBtr0086078,FBtr0086077,FBtr0111280	1	3	3	60	2R	980669	980688	TCATCGGATACTAAGGACAC		58	980711	980729	AGTCTTCAACTCGAAGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17715	FBgn0041004	FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246	1	6	6	93	2L	22742091	22742164	ATAATGATCATGGCGGGTG		59	22742219	22742239	TTATGGTGTTTCCTAGTCCTG		59	NA	
Drosophila melanogaster	50	CG41434	FBgn0084001	FBtr0111262	3	1	1	60	2L	22038813	22038833	ATACCCTTACGTACTACTGGA		59	22038854	22038873	ATTCTTCTCTTGCGATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3305	FBgn0032949	FBtr0085896	3	1	1	228	2L	21574898	21574916	CGACAACAACTGAGAAACC		58	21575107	21575977	GTAAAGTTTCCCTCCCTAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Mio	FBgn0032940	FBtr0081524,FBtr0081527,FBtr0081528,FBtr0081526,FBtr0081525	3	5	5	84	2L	21286543	21286561	AGTCTTGATGAGCTACGTC		58	21286414	21286496	TATTTGTAACAGCTGGACGA		59	NA	
Drosophila melanogaster	50	Hr39	FBgn0010229	FBtr0081481,FBtr0081480,FBtr0081479	2	3	4	153	2L	21256008	21256026	AAGATAACCCTATCGCAGG		58	21257042	21257114	ACTCTGTCGTATCTGACTG		58	NA	
Drosophila melanogaster	50	CG31674	FBgn0051674	FBtr0081423	1	1	1	173	2L	20832250	20832268	GAAAGAAACGGCAGTACTG		58	20832456	20832674	GGAGTAACCACAACATTGTC		58	NA	
Drosophila melanogaster	50	CG34051	FBgn0054051	FBtr0100106	3	1	1	116	2L	19960589	19960674	ATATTTCGAACTGGAGCAGAG		59	19960493	19960514	CACCGTCAAAGAATAACTTCAG		59	NA	
Drosophila melanogaster	50	TepIV	FBgn0041180	FBtr0081254	3	1	1	108	2L	19553195	19553213	TTATCCCTACAGGGAACCA		59	19553285	19553371	GATCTTGAGGTTCCAGACG		59	NA	
Drosophila melanogaster	50	CG17350	FBgn0032772	FBtr0081199	2	1	1	91	2L	19382123	19382207	AAACGAAAGAGTCCAAGGA		58	19382262	19382280	GATTTCGAACGTGATGTCC		58	NA	
Drosophila melanogaster	50	Arr1	FBgn0000120	FBtr0081030	2	1	1	131	2L	18079716	18079967	ACCACACTTATTGCCAGTC		59	18080059	18080080	GTGCATCAGAATAAATGGTAGC		59	NA	
Drosophila melanogaster	50	CG13258	FBgn0032582	FBtr0080853	2	1	1	74	2L	16292363	16292381	ATATGCCAACTGATGTCCG		59	16292307	16292326	CGATGACTCCAGATAATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tim17b2	FBgn0020371	FBtr0089699,FBtr0089700	1	2	2	65	2L	15485207	15485225	CAATGATCGAGGGCTTAGG		59	15485254	15485272	GTTCACGATTTCGGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31855	FBgn0051855	FBtr0080467	1	1	1	67	2L	13369471	13369489	AACATGGAATTCGAACGTC		58	13369520	13369538	CTCTGAATGCTCATCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15639	FBgn0032502	FBtr0080477	3	1	1	128	2L	13305735	13305753	ATCCGATAAAGATGAGCCA		58	13305560	13305580	CCATCATGGGATAGATAGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6043	FBgn0032497	FBtr0089911,FBtr0089910,FBtr0114471,FBtr0113039,FBtr0113040	2	5	5	141	2L	13276279	13276383	CAACAACGATATGATGCCC		58	13276488	13276506	TTTCAGGTGTTGTCATTGC		58	NA	
Drosophila melanogaster	50	CG5867	FBgn0027586	FBtr0080449	2	1	1	90	2L	13238890	13238908	GACCAAACTGGAGACTGAG		59	13238962	13239042	CAAGATGACATCGTTCAGC		58	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090029	1	2	17	195	2L	12726933	12726951	TATATCAAGAGCGTTGGCA		58	12727110	12736604	TATAGCTGAAGACTTGGCC		58	NA	
Drosophila melanogaster	50	rho-6	FBgn0032415	FBtr0080360	3	1	2	110	2L	12131373	12131391	GATCTTCAAACCGGAATGG		58	12131055	12131300	CCTATAAAGCACTGAAAGCA		57	NA	
Drosophila melanogaster	50	CG5317	FBgn0032404	FBtr0080296,FBtr0113037	2	2	2	60	2L	12056760	12056778	CGATTCCAATCCCAAACTG		58	12056801	12056820	CTTGTCGAAGATCTTCTTGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	JhI-21	FBgn0028425	FBtr0089655,FBtr0089656	2	2	2	111	2L	12054492	12055096	TATTTACACCGAATCCGTG		57	12054399	12054417	AGATCTTGTGATGCATGTG		57	NA	
Drosophila melanogaster	50	CG14934	FBgn0032381	FBtr0080275	1	1	1	105	2L	11848792	11848810	AGAAGTGGTTAATCGCAGG		59	11848950	11848968	GATGTCAACCAGTTCAGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	salr	FBgn0000287	FBtr0080235,FBtr0080236	1	2	2	119	2L	11372325	11372343	AACTTCAGTTCGAGTTCCG		59	11372424	11372533	CATATGGACCTTGAGATTCCC		59	NA	
Drosophila melanogaster	50	CG16833	FBgn0026147	FBtr0080151,FBtr0080152,FBtr0080150	2	3	3	80	2L	10993660	10993748	AAGACCGGAATGAGTATGTG		59	10993790	10993809	CATCCTCGGCTATGATAAGG		59	NA	
Drosophila melanogaster	50	ial	FBgn0024227	FBtr0080180	1	1	1	112	2L	10857110	10857128	CATGGAGATCTCCTACCCA		59	10856956	10856974	AATGGGTCATCACATCCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17085	FBgn0032309	FBtr0080141	2	1	1	176	2L	10851680	10851699	ATATTGAGGTTAGTTCGCGG		59	10851838	10851856	GAATCTGTATATGCCGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17127	FBgn0032299	FBtr0080136	1	1	1	60	2L	10771192	10771211	ATCAATCTCTTCGAGATCCT		57	10771234	10771252	ACTGCAGGTTGTTTATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CHIP	FBgn0027052	FBtr0080027	3	1	1	122	2L	10438642	10438660	AAATGTACACGATGAGCAG		57	10438805	10438892	ACTTCACGTTTCTTTCGAC		58	NA	
Drosophila melanogaster	50	CG13139	FBgn0032230	FBtr0080002	3	1	1	159	2L	10365532	10365550	ATCGCCCTAATGAATTCCG		59	10365673	10365781	CCAGCATGAATCTGAATGC		59	NA	
Drosophila melanogaster	50	CG4995	FBgn0032219	FBtr0079989,FBtr0079990	3	2	3	241	2L	10322826	10323681	AATGATAAGGATCCCTACCG		58	10323953	10323971	TCTCTTTGCACTATCGTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5640	FBgn0032207	FBtr0080075	1	1	3	97	2L	10277916	10278258	ACTCCGAAGCTTTATCAGC		59	10277837	10277855	ATAAGCAACGCCTATTCCA		59	NA	
Drosophila melanogaster	50	Srp54	FBgn0024285	FBtr0079875	3	1	1	61	2L	9913817	9913836	CCATGACCATTGTGAAAGAG		58	9913859	9913878	TCCAATTACCGGATCAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4036	FBgn0032149	FBtr0079870	1	1	1	60	2L	9791082	9791101	CATGGTCCTACTGTATCCAG		58	9791124	9791142	TGGACATGATTGGTATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ggamma30A	FBgn0028433	FBtr0079796,FBtr0079797,FBtr0079795	2	3	3	82	2L	9272595	9291061	AATCCATAGCAGAAATGCG		58	9291107	9291125	ATTGTTCTTCTTATCCGGC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	alien	FBgn0013746	FBtr0079781,FBtr0079780	3	2	2	117	2L	8995734	8995811	CTAGATGACACAATCAAGGGA		59	8995637	8995655	ATTGGATTTGGTTGGACCA		59	NA	
Drosophila melanogaster	50	Cyp4d21	FBgn0031925	FBtr0079471	3	1	1	90	2L	7606643	7606663	CTTTACTGACAAGGTCATTCG		58	7606715	7606793	ATCGTCTCCCATTATCAGC		58	NA	
Drosophila melanogaster	50	CG5261	FBgn0031912	FBtr0079445,FBtr0079444	3	2	2	103	2L	7428203	7428285	TAAGCTCAACGAAGGTGAC		59	7428351	7428370	CCTGGATGAGAATCTTAGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13993	FBgn0031776	FBtr0079191	3	1	1	111	2L	6069481	6069568	CGACACAAGAGTTTACCAG		58	6069643	6069661	CAGTTCTATCGCTTTGTCG		58	NA	
Drosophila melanogaster	50	bchs	FBgn0043362	FBtr0079144	2	1	1	80	2L	5912388	5912470	CTAAGCGTCAGTTTCTCTG		57	5912513	5912532	GGCAATACTGTATAGTAGCC		57	NA	
Drosophila melanogaster	50	CG14005	FBgn0031739	FBtr0079160	2	1	1	60	2L	5801332	5801350	CGCAGTAGTGAAGACAGAG		59	5801290	5801311	GTATTCAATATTCACCAGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9171	FBgn0031738	FBtr0079162,FBtr0079161	1	2	2	114	2L	5770099	5770117	ATTCTGGCTTCAGACATCG		59	5769934	5770021	ATGGAAATACTCTGGGTGC		59	NA	
Drosophila melanogaster	50	CG11147	FBgn0031734	FBtr0079165,FBtr0079166	1	2	2	80	2L	5735111	5735129	TCCAGGAACCAATCTTTGG		59	5734813	5735068	AGAAGACCATGGTCATTACC		59	NA	
Drosophila melanogaster	50	CG14017	FBgn0031721	FBtr0079105,FBtr0079104	2	2	2	60	2L	5554211	5554229	GTGCTTCTATTTCAGCGAG		58	5554251	5554271	CTCTAGAAGTGCCATAGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14014	FBgn0031718	FBtr0114511	3	1	1	60	2L	5550713	5550733	GATCTTCATCTTTAACTCGCC		58	5550673	5550691	TTTCTGGTACACGATCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Oscillin	FBgn0031717	FBtr0079102,FBtr0079101	2	2	2	153	2L	5548088	5548173	GATGAGTATGTGGGACTGG		59	5548290	5548308	CCTCGAACTTATTGCACTC		58	NA	
Drosophila melanogaster	50	hoe2	FBgn0031649	FBtr0077394,FBtr0114514	1	2	2	80	2L	4935313	4935331	TTTGGATTTCTGACTGTGC		58	4935174	4935271	TGGAAGTATATCCTGGAACAC		58	NA	
Drosophila melanogaster	50	Bsg25A	FBgn0000227	FBtr0077423	3	1	1	61	2L	4683630	4683648	GTATCAAGAAACCGGTGAC		58	4683587	4683605	GAATTCGAAACCAGGACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ine	FBgn0011603	FBtr0077448,FBtr0077446,FBtr0077449	2	3	4	142	2L	4473965	4474340	TAGTCTCAGGTTATCTTCCAG		58	4473843	4473861	GAAATGATAGGAACTGCCG		58	NA	
Drosophila melanogaster	50	CG31958	FBgn0051958	FBtr0077495	1	1	1	66	2L	3786137	3786155	GAGATGATACGCGAGTACG		59	3786185	3786203	TCATGTTGTTGGACTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bowl	FBgn0004893	FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493	2	4	4	81	2L	3780517	3780537	GCCCTATTCCTGTGATATCTG		59	3780577	3781922	CTCCTTGGAGTGAATATACCTG		59	NA	
Drosophila melanogaster	50	CG17262	FBgn0031499	FBtr0077666	3	1	1	85	2L	3039325	3039343	TGCTAAAGGTCCATCTGAG		58	3039194	3039277	CGAAATAAGGCAGTACAACC		58	NA	
Drosophila melanogaster	50	CG3119	FBgn0031466	FBtr0077692	3	1	2	105	2L	2837273	2837350	GATACGTACGTGGTCATGG		59	2836172	2837204	GCAGAAGCACATTGTATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Iris	FBgn0031305	FBtr0077986	1	1	1	60	2L	1133240	1133258	CAATGGCGTAATCCAACTG		59	1133198	1133216	CATATGATCGTTGATGCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15824	FBgn0031292	FBtr0078029	2	1	1	92	2L	884177	884266	CGATACAGAAACACCAATCG		59	884104	884122	CTGTATAACCAGCAGGAGC		59	NA	
Drosophila melanogaster	50	Plc21C	FBgn0004611	FBtr0078047,FBtr0078048,FBtr0078051,FBtr0078050	3	4	5	138	2L	344368	344386	CGAAAGAAGCATGACAAGG		59	344486	344571	GCGGAGAAAGACAATTAAGAC		59	NA	
Drosophila melanogaster	50	smo	FBgn0003444	FBtr0078129	3	1	1	64	2L	280010	280028	CAATTGAGACTTGGAAGCG		59	280125	280143	TTTCACTTCTTCGACCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437	1	6	10	94	2L	110793	110811	GAGATCACGTCTAAGGCTG		59	110869	111916	AAATCGAAACCCTTGGAGG		59	NA	
Drosophila melanogaster	50	CG31973	FBgn0051973	FBtr0113415	1	1	4	93	2L	38598	38618	CGATGGTATTATTCACCAAGC		59	38079	38544	TTCTTGAGAACTATAGGCGG		58	NA	
Drosophila melanogaster	50	pncr004:X	FBgn0047095	FBtr0091949	2	1	1	94	X	19068655	19068673	CCTTTCTGAAGAGTCCCAC		59	19065308	19068598	TTATCGAGGGTATCTTGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tty	FBgn0015558	FBtr0077224	1	1	2	163	X	21203386	21204059	AAACTACTCCAAGACCCTG		58	21203241	21203259	CTCCTCCATTCTGTAGACC		58	NA	Nonspecific
Drosophila melanogaster	50	CG1314	FBgn0031134	FBtr0077286	1	1	1	60	X	20739704	20739725	TCTACCCAATATCTACAAGGAC		58	20739665	20739683	CTTCCACAGCATTATCAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14213	FBgn0031047	FBtr0074743	1	1	2	79	X	19533365	19533383	ATATGAATCCTCAGCAGCA		58	19533426	19533496	ATTGATCCACTGGTACACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34401	FBgn0085430	FBtr0112653	1	1	1	81	X	18772012	18772092	CAGTCTATCAAGCGATCGA		58	18772137	18772155	GTCATTTGGAGTTGCTCTG		58	NA	
Drosophila melanogaster	50	CG7053	FBgn0030960	FBtr0074635	1	1	1	60	X	18686501	18686519	AAGTTTGACTACTCCACCT		57	18686543	18686561	TCTTCTTCATGGCGTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6867	FBgn0030887	FBtr0089574	3	1	1	86	X	17922030	17922119	CTGACTGTGGAACTCTACTC		59	17922167	17922186	ATTGTCGGAGATTAAACGCT		59	NA	
Drosophila melanogaster	50	CG12991	FBgn0030847	FBtr0074448,FBtr0074449	1	2	2	114	X	17492121	17492140	CATTGGGATCGTACTGTACC		59	17492217	17492312	ATCCGAATTGTCACTCACC		59	NA	
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	2	7	7	80	X	16269992	16270010	ATCACCATGTATCGAAGCG		59	16270054	16270134	TCCATTTCACCTCGTTCTC		59	NA	
Drosophila melanogaster	50	Cyp1	FBgn0004432	FBtr0074238	2	1	1	60	X	16214257	16214276	TCTATAACCCTAGCTTCGTC		58	16214216	16214234	GAATTCCAAACTGCAACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9914	FBgn0030737	FBtr0074240	3	1	1	109	X	16201327	16201345	ACATCGATAGCGTGATGAG		59	16201236	16201255	GTAGCGTTCGAAATAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8184	FBgn0030674	FBtr0074082	2	1	1	80	X	15620696	15620774	CAATGCCTTATCAAGGTTCC		58	15620817	15620835	CTCGCATCATACCAAATGG		58	NA	
Drosophila melanogaster	50	RpS15Aa	FBgn0010198	FBtr0073792,FBtr0073795,FBtr0073793,FBtr0073794	2	4	4	119	X	13230101	13230119	CAGTTTGGTTACGTTGTGC		59	13230000	13230018	GATGCGAACTTGGTTTCTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	gd	FBgn0000808	FBtr0073583	2	1	1	81	X	11880505	11880524	ATCCCGACTTTAACAGTCAG		59	11880321	11880463	GTGTTAAATCGAACTTCGTCC		59	NA	
Drosophila melanogaster	50	CG1552	FBgn0030258	FBtr0073397,FBtr0073396	2	2	2	117	X	10947114	10947134	GAGAACAATCACATAATGCCC		59	10946802	10946820	AATAAACCGGACAGCAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	BCL7-like	FBgn0026149	FBtr0071358	1	1	1	69	X	9251291	9251606	TAACACCTGTTTCTCCGTC		59	9251639	9251657	CTCAGAGAAGGGCATACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2120	FBgn0030005	FBtr0071154	3	1	1	153	X	8030081	8030099	ATTGGAACTTGTGAATGGG		57	8030284	8030302	TTCCGAGAATCTTCTGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CheA7a	FBgn0029948	FBtr0071055	2	1	1	97	X	7272421	7272533	GCAGAAGATTGTTCTCATGG		58	7272593	7272611	TAATGAACTGACAGAACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14427	FBgn0029931	FBtr0071010	2	1	1	72	X	6934976	6934994	AATCCTGCGGTTACTACAC		59	6935030	6935048	ATCTCCTCGTCATTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12543	FBgn0029872	FBtr0070919	1	1	1	93	X	6378100	6378118	TTTGTGGTCGATAACGGAG		59	6377948	6378045	CAAAGTGTCCTGAAATAGCTG		59	NA	
Drosophila melanogaster	50	CG12729	FBgn0029816	FBtr0070819	1	1	1	60	X	5739854	5739873	GTGAATTCCACCTGTAAGTC		58	5739896	5739914	TTATGAACTTGTCCAGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3323	FBgn0029750	FBtr0070758	3	1	1	207	X	5199537	5199555	AGATACGCCAGTTAGATCG		58	5199272	5199366	CGATTGCTGTTGTTAACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3546	FBgn0029716	FBtr0070679	1	1	1	60	X	4453281	4453300	CAGAGGAGAATCCAAATCAG		57	4453323	4453341	TTCTTGATCACTTCCACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fas2	FBgn0000635	FBtr0070666,FBtr0070667,FBtr0070665	3	3	3	60	X	4048783	4097238	GCTGCTCTTTAATAGAACTGAC		59	4048744	4048763	TGTTTGGGATAAATCTCCAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	fs(1)Ya	FBgn0000927	FBtr0070485	1	1	1	81	X	2620218	2620236	GATGAGTTCCATGATGCGA		59	2620281	2620299	CTTATCCGAATCCCTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	east	FBgn0010110	FBtr0070326	3	1	1	100	X	1912033	1912744	ACGAGAACGAAGATTCGTC		59	1912808	1912826	CGGAATGAGGATCTTCTCC		59	NA	
Drosophila melanogaster	50	CG3587	FBgn0023521	FBtr0070321	1	1	1	80	X	1835080	1835165	TACTTATAATGCACCGCTG		57	1835209	1835227	AGGATCTCCTTGATGATCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG11409	FBgn0024366	FBtr0070238	3	1	1	60	X	1226350	1226369	GGGAACCTCTACTCATTGAG		59	1226309	1226327	ATGTCTATGTTCGGATCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11663	FBgn0029539	FBtr0070164	2	1	1	201	X	788774	788792	ATGCAAACCCAGATAACAC		57	788957	788975	TGTTACTGGTCGTTGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40847	FBgn0085775	FBtr0114226	1	1	2	93	U	2293119	2293202	GGAATCCGTACCAGAACAG		59	2293044	2293062	ATAACTTCCTCGGAGAGCA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450	1	8	8	166	4	157780	157853	TCGAGCAACCTTAAGACAC		59	158041	158059	TAAACCAATTGCTTGCAGC		59	NA	
Drosophila melanogaster	50	PH4alphaEFB	FBgn0039776	FBtr0085650	3	1	1	89	3R	26310458	26310953	CCACCGTTCTATTCTATATGAG		57	26311003	26311021	TTCCCTTCTTGGGAAACAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31048	FBgn0051048	FBtr0085327	3	1	1	89	3R	24692467	24692544	CGTCTATACCACGAGATCC		58	24692596	24692615	GTATAAATGAGCCAGCTCCT		59	NA	
Drosophila melanogaster	50	CG6059	FBgn0039491	FBtr0085130	3	1	1	114	3R	22949093	22949112	TTAACGATCAAGTTCTGGTC		57	22948948	22948966	GAACGAGCTATTTCCTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17191	FBgn0039473	FBtr0085152	2	1	1	68	3R	22845343	22845415	CAACAGTAAGTGCTCTTCC		58	22845293	22845311	CTATCTGAGGCACATACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14254	FBgn0039469	FBtr0085075	2	1	1	60	3R	22821429	22821449	GAGAAGACTCTGATCTATGTG		57	22821471	22821489	GGATCACGATATCTTGCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr97a	FBgn0041224	FBtr0085081	2	1	1	65	3R	22791203	22791221	TCGTATTTCTGGCTGTTCC		59	22791099	22791176	TGAGGGTTTGGTTACTTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	beat-VII	FBgn0039447	FBtr0085050,FBtr0085051	2	2	2	60	3R	22489063	22489326	AATCGACTGGGACAATTCC		59	22489021	22489040	TAGATCGAACTGGACATCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14551	FBgn0039408	FBtr0084971	2	1	1	152	3R	21887748	21887766	GGAGAACCTAAGACTCCTC		58	21887302	21887320	TAAATGGTGACCACTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL27	FBgn0039359	FBtr0084932	3	1	1	77	3R	21510053	21510071	AAGGTGACCAAGAAGATGG		59	21509994	21510012	GTAGTTCAGGCTCTTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	XNP	FBgn0039338	FBtr0084838,FBtr0084837	3	2	2	65	3R	21305069	21305143	AACTACGAGTTCGAAGGTG		59	21305022	21305040	GAAGTAATCCTTTCCGCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Ela	FBgn0013949	FBtr0084709	1	1	2	198	3R	20691529	20691547	AGGAGGATCCTCATCATCC		59	20691876	20691894	CTGTGGCAAGTATACTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13602	FBgn0039127	FBtr0110793	2	1	2	79	3R	19754113	19754132	AAACCTATACGGCATATTGC		58	19753966	19753984	CTTGCTAATCCGTTTCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17382	FBgn0039080	FBtr0084416	3	1	1	60	3R	19314044	19314064	TTACCCTATGTACGACATCAG		58	19314086	19314104	CACACTTAAAGGCTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rumi	FBgn0086253	FBtr0084320	1	1	1	87	3R	18576169	18576187	AGAAGATGACGGACTTTGC		59	18576050	18576121	CTTGAAGCTAAATTCATCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33099	FBgn0053099	FBtr0084288	3	1	1	82	3R	18355700	18355769	GAGGACAAGATCAAAGCTG		58	18355636	18355654	TTTCGTCTGTAACGATCCT		58	NA	
Drosophila melanogaster	50	CG34149	FBgn0083985	FBtr0111020,FBtr0113489	3	2	2	174	3R	18205913	18205987	GATTCTGAATGGAAGACAGAC		58	18206123	18206141	ATGGCTTGTTAGGATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7069	FBgn0038952	FBtr0084215	2	1	1	60	3R	18199275	18199293	GGGTATTTGTAGACGACGG		59	18199315	18199335	ACTTCATCTCCCTTTGATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31424	FBgn0051424	FBtr0084249	2	1	1	60	3R	17941741	17941759	ACTGTTGTCATGGATCACG		59	17941699	17941718	AGAAATCCACACCAATTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	E2f	FBgn0011766	FBtr0084118,FBtr0084119,FBtr0084117	2	3	3	202	3R	17449734	17449753	GAGATCAACGTCTTCCTCTG		59	17449364	17449569	GGCGTTTGAAATAATCCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	lbe	FBgn0011278	FBtr0084091	2	1	1	114	3R	17268106	17270809	AAGATAAATCCCACTTGGAC		57	17268011	17268029	TAGAGAAATCGCTTCTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CheB93a	FBgn0038888	FBtr0084089	3	1	1	147	3R	17233645	17233663	AATGCATTACCACTCCAGG		59	17233844	17233862	CTATCACGCTTAACTCCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7009	FBgn0038861	FBtr0084029	2	1	1	269	3R	16958961	16958979	TTGTACACTCAGCTCAAGC		59	16958655	16958728	ATAGTTCTCGCCCAAATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Elongin-B	FBgn0023212	FBtr0083947	2	1	1	83	3R	16404508	16404647	CTTGACATTCAGGAACGAG		58	16404443	16404461	ATGACTTCGGGTAAGTCTG		58	NA	
Drosophila melanogaster	50	CG4433	FBgn0038763	FBtr0083843,FBtr0083842	3	2	2	90	3R	15845006	15845024	CTTGGACTCGATCAATGTG		58	15844873	15844952	ATTCAGTATGCACCAATGC		58	NA	
Drosophila melanogaster	50	CG4733	FBgn0038744	FBtr0083820	3	1	1	81	3R	15723302	15723320	TTCTATTCGGTAAACCGCA		58	15723365	15723476	GACTGATCATCTCCAGCAG		59	NA	
Drosophila melanogaster	50	CG5237	FBgn0038693	FBtr0083742	2	1	1	80	3R	15060249	15060270	TGATGATACCATACACTTCGAG		59	15060130	15060210	GACTTTGTGGATTTCTCTTCG		59	NA	
Drosophila melanogaster	50	CG7713	FBgn0038545	FBtr0083513	1	1	1	80	3R	13621346	13621427	ACGGTATTAAGATCAGCACTC		59	13621467	13621487	AGCTAAACTGGAAGAGAATGG		59	NA	
Drosophila melanogaster	50	ird5	FBgn0024222	FBtr0083236	2	1	1	88	3R	11872785	11872872	GAAAGACCTATTCGATTGCG		59	11872716	11872736	CGGCGTCATTATTTAACTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10264	FBgn0038394	FBtr0083222	3	1	1	86	3R	11869873	11869891	TTTCAAGACCTGGTCATCC		59	11870016	11870034	CTCGAAATTTAGCAATCGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7026	FBgn0038276	FBtr0083007	2	1	1	78	3R	10725439	10725458	TCAAGATCCTCATTGTGGAG		59	10725380	10725398	TTGGAGGTCATGTAGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	foxo	FBgn0038197	FBtr0082887,FBtr0082886	2	2	3	158	3R	9892725	9892744	GGAAATCTATCCTATGCGGA		58	9892865	9905076	TATGGAGTTCTTCCATCCG		58	NA	
Drosophila melanogaster	50	Hsc70-2	FBgn0001217	FBtr0082707	3	1	1	60	3R	8872895	8872913	AGAAGGAGGAGTTCGAGAG		59	8872934	8872955	GACATTATTGGAGTACAGATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)87Df	FBgn0002354	FBtr0082703	2	1	1	149	3R	8856858	8856876	TTTCTCTACGGAATCAGCG		59	8856989	8857072	GACGGACCATTGATACCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14708	FBgn0037910	FBtr0082409	1	1	1	60	3R	7380422	7380440	AGGACATGTTCATCAACGG		59	7380464	7380482	ATAATTGCGGTGAAGACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6621	FBgn0037855	FBtr0082329	2	1	1	136	3R	6716556	6716729	GACAACAAGCTCATGAACAG		59	6716439	6716459	GACTTTCTAGATGAGACTGCT		58	NA	
Drosophila melanogaster	50	CG6254	FBgn0037794	FBtr0082184	3	1	1	95	3R	5985598	5985616	AGGATCACAAACTTGTGCA		59	5985458	5985542	CTAAATGGATCTTTAACCTCGC		59	NA	
Drosophila melanogaster	50	CG3934	FBgn0037783	FBtr0082176	2	1	1	95	3R	5886263	5886395	ACATCCAATTTGTTGCCAC		59	5886452	5886472	CTTCTAGGTCATAGGGTATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	tgo	FBgn0015014	FBtr0082005	2	1	1	60	3R	4844947	4844966	GAGCAATTATCAACCCAGGA		59	4844906	4844924	TTCCCGACTTTAGATCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0089783,FBtr0089784,FBtr0089782,FBtr0089781,FBtr0114459,FBtr0112822	2	6	8	110	3R	4659790	4659872	CCCGTAATATCGATCCACG		59	4659698	4659716	TGTATTTGCCGTAATCCGT		59	NA	
Drosophila melanogaster	50	CG31462	FBgn0051462	FBtr0081851	1	1	1	60	3R	4212739	4212759	TCTACAAGAGCTACAAATCCG		59	4212699	4212718	TAGGCATCCAAATAGTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Scr	FBgn0003339	FBtr0081659,FBtr0081657,FBtr0081658	3	3	3	73	3R	2667000	2667018	CAATGGAAAGAAGAACCCG		58	2651400	2666963	CATTCACAGTACTCGTCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	lab	FBgn0002522	FBtr0081696	2	1	1	60	3R	2488344	2488362	CTTCAATCGCTACTTGACG		58	2488302	2488321	ATTAAGCTGCAACGTATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1137	FBgn0037454	FBtr0081705	3	1	1	152	3R	2385095	2385113	CTGATAAGGAGGCCTACCT		59	2384902	2384920	CTTCCAAATCAGCTTGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18048	FBgn0037435	FBtr0081712	3	1	1	60	3R	2173090	2173108	GGTTCTGGATTATGGACGA		58	2173129	2173150	CTTAAGTTCTGCTTGATATCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31562	FBgn0051562	FBtr0078589	3	1	1	107	3R	2010543	2010561	CACCATCATGATCCTCGAG		59	2010766	2010784	TAGCGACTCTTCAGATTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199	3	14	15	133	3R	1100031	1100465	GAGCACAACGTATTTGGTG		59	1099916	1099934	TACATATTCTCGCCAGTCC		58	NA	
Drosophila melanogaster	50	CG14645	FBgn0040687	FBtr0078908	3	1	1	60	3R	160994	161013	TGAGACACTTAACAAACCAG		57	161036	161054	ATCCATGAATCCTGTTTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11523	FBgn0037156	FBtr0078511	3	1	1	60	3L	22259528	22259546	TGCATCTCATCCAAACTGG		59	22259486	22259504	CGATAGTCCGGATGTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	olf413	FBgn0037153	FBtr0089664	3	1	1	86	3L	22222254	22222366	CAAATTACGCCAGATACGAC		59	22222415	22222433	CGTCGAAAGTCCTGATAGG		59	NA	
Drosophila melanogaster	50	CG32442	FBgn0052442	FBtr0089797	2	1	2	142	3L	21522166	21522184	ACAACTGTCACCAAATCAC		58	21521993	21522060	AAACCTTCCAGTAGAGCTC		58	NA	
Drosophila melanogaster	50	CG12983	FBgn0037040	FBtr0114616,FBtr0114618,FBtr0078332,FBtr0114617	3	4	4	114	3L	20959768	20959786	TTTCCATTAAACCAGCCGT		59	20959614	20959693	GCATCATCAATAAAGGCTACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13248	FBgn0036984	FBtr0078234	1	1	1	60	3L	20402270	20402289	TCAATATAGCCGTGATGGTG		59	20402229	20402247	TTCTTACCATCCGCATACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	in	FBgn0001259	FBtr0078183	2	1	1	60	3L	20361524	20361545	TAATCGGATACATACGCTTCTC		59	20361564	20361584	CTCTCCTGATTAAAGCTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32225	FBgn0052225	FBtr0074845	3	1	1	243	3L	20298017	20298035	AGACTGTGATCATGTACGC		59	20297735	20297810	TTGAAGTATCTCCAACCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Hdm	FBgn0036955	FBtr0074826,FBtr0074825	1	2	2	96	3L	20221968	20221986	AATAAGGTTGTGCTCTGCT		59	20222046	20222181	ACATTTCTCCTCTACTCGC		58	NA	
Drosophila melanogaster	50	CG32223	FBgn0036946	FBtr0074861	2	1	1	191	3L	20183914	20183933	ACTCCTTCATCCATGATCAG		58	20162148	20183760	GGATTCGAGTCGTTACCTG		59	NA	
Drosophila melanogaster	50	CG14185	FBgn0036936	FBtr0074818	3	1	1	85	3L	20100156	20100174	CAAGTGATCTGGAGTCTGG		59	20100223	20100241	ATTCAAGGCGATAGGAACG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(z)12	FBgn0020887	FBtr0074917,FBtr0074916	2	2	2	118	3L	19914078	19914161	GTCACAACAGACTCTACCA		58	19913978	19913996	CATCTGGATGGTCTTCTGG		59	NA	
Drosophila melanogaster	50	star1	FBgn0036790	FBtr0089578	2	1	1	81	3L	18567824	18567907	GGTACTGACGGTGATAAGTG		59	18568007	18568025	GGGATTCGAGTGAATCAGG		59	NA	
Drosophila melanogaster	50	Cpr72Ea	FBgn0036617	FBtr0075382	1	1	1	60	3L	16355757	16355775	ATCCACTTCTGCTGTTAGG		58	16355799	16355817	TAGGGATAGTACAAGGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf4	FBgn0010280	FBtr0075450,FBtr0075449,FBtr0075451,FBtr0075448,FBtr0114589	3	5	5	192	3L	16112318	16112339	GATGAGGTATTTCTCAATCTCC		58	16112492	16112567	GTGGATCCAACTTGATGAC		58	NA	
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0075438,FBtr0112850,FBtr0075439	3	3	6	81	3L	16070897	16073864	AGAAGAGCTCAAGCAACTC		59	16073908	16073927	AATTACTCTAATCAACGCGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13445	FBgn0036532	FBtr0075503	2	1	1	227	3L	15802624	15802704	GTTCTTTGGTATCATCGCC		58	15802895	15802913	TAGCCTTCAGGATACTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	comm3	FBgn0053209	FBtr0075589	1	1	1	95	3L	15625073	15625092	GATTGGAGTCATCCTTACAC		57	15607122	15625016	TATGAGTTCTTCCACTGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10116	FBgn0036367	FBtr0075824	1	1	1	99	3L	13450044	13450117	CCAACAGTCGTAACTATTCC		57	13449964	13449982	TTATATTGCTGTCCTGCTG		57	NA	
Drosophila melanogaster	50	CG11268	FBgn0036336	FBtr0075876	3	1	1	120	3L	13012048	13012066	GCAGTTCAAGAGATACGGA		59	13012150	13012296	ATTCTGGACCAAGTGAGTG		59	NA	
Drosophila melanogaster	50	CG17153	FBgn0036248	FBtr0075992	1	1	1	270	3L	12111720	12111799	ACTAGACGATTCGTTGGAG		58	12112093	12112111	GGATTTGTGTCCAGTTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Pi3K68D	FBgn0015278	FBtr0076086	3	1	3	130	3L	11779735	11780171	AAACGACAATACTGTGTCG		58	11779623	11779641	CGAAACCCTTTAGATGGTG		58	NA	InUTR
Drosophila melanogaster	50	CG14142	FBgn0036143	FBtr0076162	3	1	1	150	3L	11168111	11168191	GATGAGAGTAGCTATGCGG		59	11168441	11168459	TCCAAATGGGATAGTTGGG		58	NA	
Drosophila melanogaster	50	CG34456	FBgn0085485	FBtr0112762	2	1	1	75	3L	9355469	9355487	GTACGGATACGATGGAGTG		59	9355525	9355544	ATTCAGGATGGACAGTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sphinx1	FBgn0052383	FBtr0076865	2	1	1	60	3L	7431775	7431795	CGTCAGCGATCATATAAAGTG		58	7431735	7431754	GGAATACTCACAGAATCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bhr	FBgn0082598	FBtr0076849,FBtr0076848	1	2	2	71	3L	7365560	7365578	ATGCCTTTGTCAAGTTCAC		58	7365613	7365692	TTTACGACAGGTAGCTAGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	lark	FBgn0011640	FBtr0076842,FBtr0076843,FBtr0076845,FBtr0076841,FBtr0076844	1	5	5	271	3L	7333870	7333995	GGACTATGACTACTATGACCG		58	7334466	7334484	TAAAGTCCTCGTAACCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12607	FBgn0035545	FBtr0073302	3	1	1	84	3L	4447578	4447907	TCCAGTCTATAACGAAACCA		58	4447954	4447972	TGTCTCTTTGTACTTCGCT		58	NA	InUTR
Drosophila melanogaster	50	CG32262	FBgn0052262	FBtr0073184	2	1	1	60	3L	3809384	3809403	TCATGTCCTACATGAAGCAC		59	3809343	3809361	GCAACTAACTTCTCCTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14964	FBgn0035410	FBtr0073110	3	1	1	102	3L	3175327	3175442	GGATAAGGACAAACAAGATTCC		59	3175246	3175264	TGTAAACTCTAGGAAGGCC		58	NA	
Drosophila melanogaster	50	Cht2	FBgn0022702	FBtr0072795	1	1	1	98	3L	1753509	1753527	ATCATGTGCTACGACTACC		58	1753302	1753447	GGAGAATTTCACACTCAGC		58	NA	
Drosophila melanogaster	50	CG9168	FBgn0035216	FBtr0072692	2	1	1	60	3L	1412194	1412212	CAACGCTTTGAGAATTCAG		57	1412236	1412254	CATGGGTGAAACTATTGCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED30	FBgn0035149	FBtr0072558	2	1	1	61	3L	653147	653165	TGAACTCATAGAGACCGTC		58	653104	653122	GTGTCCGATCGATGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13885	FBgn0040689	FBtr0100297	2	1	1	152	3L	391608	391626	TATACACTCGCATCACCAC		59	390987	391495	TGCACTTCATAACTGTAGTAGG		59	NA	
Drosophila melanogaster	50	CG13884	FBgn0035138	FBtr0072568	2	1	1	92	3L	366256	366274	ACTACAATCATGGTGGCTC		59	366182	366202	CATAACTTCCAAATAGCGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rno	FBgn0035106	FBtr0072531,FBtr0072532	3	2	2	138	3L	197456	197474	GATGAGAATGTCATCTGCG		58	197278	197354	ATAGCCATTGTCCTGATGG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-841d	FBgn0083016	FBtr0113524	2	1	1	61	2R	17218438	17218456	ACTAGCTTCGTGTGATGAC		59	17218481	17218499	CATGGATAAGACGCATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33422	FBgn0053422	FBtr0086414	1	1	1	62	2R	15628264	15628282	AATACATCGGTTCTCGTCC		59	15628220	15628238	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	fzr2	FBgn0034937	FBtr0072146	2	1	1	60	2R	19838607	19838625	GTACAAGATACTCGATGCG		57	19838649	19838667	CCAGTCAATAAGGTTCAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)06496	FBgn0010622	FBtr0071985	2	1	1	133	2R	18949725	18949743	GGAGAGGATTAAGCAGCTG		59	18949610	18949628	CCTCGATAAGTTCGCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shg	FBgn0003391	FBtr0071546	2	1	1	60	2R	16938715	16938736	GAGACGATCATTAATTACGAGG		58	16938676	16938694	TCAGATCATAGTCCGTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hrg	FBgn0015949	FBtr0111010,FBtr0086484,FBtr0086483	2	3	3	88	2R	15554704	15554781	AGATTTCAAGTCTGGGATCC		59	15554635	15554654	GAATTCTGTTGTGGGTATGC		59	NA	
Drosophila melanogaster	50	CG16716	FBgn0034459	FBtr0086467	1	1	1	68	2R	15483191	15483209	AATAAGCAACCCATGTTCG		58	15483241	15483314	TATTGCCTGGAGATTCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9416	FBgn0034438	FBtr0086555	3	1	1	81	2R	15256386	15256469	CACTAAAGAGCATGGTTTACC		58	15256325	15256345	GGTGATAATGGTCAAGATCAG		58	NA	
Drosophila melanogaster	50	CG10474	FBgn0034427	FBtr0086561	2	1	1	69	2R	15173164	15173183	CTATATGGTCAGTAGTCCGG		58	15173114	15173132	TTTCTCAGGATTCGCTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15093	FBgn0034390	FBtr0086640,FBtr0086639	1	2	3	60	2R	14664055	14664073	ACTTTGTGATCACCATGCT		59	14664013	14664031	GTCATCTCATCGTAGGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18467	FBgn0034218	FBtr0086918	3	1	1	103	2R	13329029	13329048	TATAGACCATCCACTTCGTG		58	13329113	13329187	TGATATCCCTCTGTAACCAG		57	NA	
Drosophila melanogaster	50	Chit	FBgn0013763	FBtr0087111	3	1	1	139	2R	12580300	12580318	CGATCGTCGATGAGAAGTC		59	12580421	12580501	GTCGTAGAACAGGGATGAG		59	NA	
Drosophila melanogaster	50	Iap2	FBgn0015247	FBtr0087297	1	1	2	66	2R	11821705	11821723	TAACTTTCAAGGACTGGCC		59	11821278	11821297	TAGTAGAAACCTGCCTTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34188	FBgn0085217	FBtr0112381	1	1	1	251	2R	11315048	11315119	GTAGGTGCAGAATGGAGTC		59	11314741	11314759	AACTTCCTCCATTCGTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	dup	FBgn0000996	FBtr0087387	2	1	1	147	2R	11265914	11267069	CTTATAAGCCCTTTGAAGACC		58	11265787	11265805	CCAATTTGACAGGAGATCC		57	NA	
Drosophila melanogaster	50	Cyp6a19	FBgn0033979	FBtr0087453	2	1	1	60	2R	10766342	10766362	GGAATACGATTCTATGCAGGA		59	10766381	10766456	CCTTAGCGATTCATTGATAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33156	FBgn0053156	FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681	2	5	5	83	2R	9436514	9436533	ATTATGGTGACTCCCATCTG		58	9436391	9436470	TACTGATATCTTCAGCTCCAC		58	NA	
Drosophila melanogaster	50	cbs	FBgn0086757	FBtr0087666	3	1	1	172	2R	9339513	9339827	CTTTGAGCGCAATAAATCTC		57	9339962	9339980	GCATTATGGTTTCGTCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13326	FBgn0033794	FBtr0087779	3	1	1	135	2R	9017613	9017686	AATCAGACACTAGCGATGC		59	9017496	9017517	TCTTAAGATTCTCGCTCATCAC		59	NA	
Drosophila melanogaster	50	CG3790	FBgn0033778	FBtr0087815	1	1	1	80	2R	8760662	8760740	CCATGATCAATCATATGGGTC		58	8760602	8760621	CAAATCCTCCCAAGATTAGC		58	NA	
Drosophila melanogaster	50	Tsp47F	FBgn0033629	FBtr0088152	2	1	2	237	2R	7265747	7266040	GTAACGACATGCGAATCTC		58	7265469	7265487	TCCACAATGAAGATGACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13202	FBgn0033623	FBtr0088157	1	1	1	60	2R	7243888	7243909	TGATGGAGAACTCTATGAACTG		59	7243849	7243867	CTGAGTGCTATAAACAGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr47Ed	FBgn0033601	FBtr0088188	1	1	1	60	2R	7149171	7149284	GCTATTGATCTTGACTGGCT		59	7149130	7149148	AATGGAAGTACACTCAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17765	FBgn0033529	FBtr0088274	3	1	1	113	2R	6368037	6368603	GCTGATGATAAGCATGTTCG		59	6368735	6368754	TGATCGTAGGTCTTGAAGAC		58	NA	
Drosophila melanogaster	50	CG30008	FBgn0050008	FBtr0088380	3	1	1	87	2R	5777590	5777610	CGATTTATAAGGATCCCTGGT		59	5777659	5777803	CATTCCATGAAATGCGGAC		59	NA	
Drosophila melanogaster	50	CG1513	FBgn0033463	FBtr0088450	2	1	1	92	2R	5772529	5772548	TCATAACATTGGTGAGGGTG		59	5772395	5772474	GTAAGAATAGACCTGCCGT		58	NA	
Drosophila melanogaster	50	dpr12	FBgn0085414	FBtr0112626	3	1	1	97	2R	1744802	1744883	ATTGAGAAGAGTCCTACACC		58	1744943	1744961	GTCTCAATGGTTATGTCGC		58	NA	
Drosophila melanogaster	50	His-Psi:CR33805	FBgn0053805	FBtr0091809	1	1	1	60	2L	21429078	21429097	GAATTATTCCGCGTCATCTG		59	21429120	21429138	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17018	FBgn0039972	FBtr0085958,FBtr0085957,FBtr0085956	1	3	3	80	2L	22365253	22365274	GTCAGTTATACTCGAGATTCCT		58	22365314	22365385	TGGGACATCCTTTAGAAGTC		58	NA	
Drosophila melanogaster	50	CG1832	FBgn0032979	FBtr0085964,FBtr0100407	1	2	2	129	2L	22168219	22168237	ATACAATTACGCCCTGGTC		59	22168055	22168126	GGATATGGTGTTAGCTGCA		59	NA	
Drosophila melanogaster	50	His2B:CG33880	FBgn0053880	FBtr0091884	1	1	1	61	2L	21508322	21508340	AAGAACATCACCAAGACCG		59	21508279	21508297	TAGATGGCATAGCTCTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10188	FBgn0032796	FBtr0081283,FBtr0081282	2	2	2	137	2L	19506345	19507491	AGGTATTTCGACCCATTCG		59	19506226	19506244	GCTATAATTGAGCTCGTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0100449,FBtr0081211,FBtr0081213,FBtr0081212,FBtr0081210	1	5	6	97	2L	19410546	19410564	CAAACATCAAGCTCTGCAG		59	19410401	19410485	AGTGCTCTTGATACACCTG		58	NA	
Drosophila melanogaster	50	Ddc	FBgn0000422	FBtr0081168	1	1	3	92	2L	19119229	19119247	ATCAAGATCGACATGGAGG		58	19118128	19119173	CCTTTCGCGTATATTCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5674	FBgn0032656	FBtr0081023,FBtr0081021	1	2	3	104	2L	17971990	17972267	GATTCCGCAAGAAGTTGAC		59	17972335	17972353	TGTACTCCGGATTCATTCG		59	NA	
Drosophila melanogaster	50	CG15147	FBgn0032654	FBtr0080988	1	1	1	61	2L	17626056	17626074	CTCCAGCTAAGGATCAACG		59	17626013	17626031	GCAATAGCAACCTCAAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15136	FBgn0032625	FBtr0080954	3	1	1	61	2L	17047596	17047778	TGATGAGTTATCTACGTACACC		59	17047556	17047574	GCTCGTAGCATATGTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyt-c-d	FBgn0086907	FBtr0080888	2	1	1	61	2L	16719328	16719346	GGAATTTGGACGAGTACCT		58	16719371	16719389	GAACACCATCTTTGTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fzy	FBgn0001086	FBtr0080833	3	1	1	93	2L	16311771	16311789	ATATACCCACCACATCCGA		59	16311899	16311917	ACTATATTGTCGGCACTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	wor	FBgn0001983	FBtr0080740	3	1	1	64	2L	15425379	15425397	AAGAAGCGTCCGATAATGG		59	15425271	15425353	GGTCCTTCATCATGACTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)34Fa	FBgn0001967	FBtr0080608	2	1	1	74	2L	14019954	14019972	CAGCTATGTGGTGTACGAG		59	14019898	14019916	AGAATGGTTCGATATCCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16996	FBgn0032412	FBtr0080334	3	1	1	60	2L	12110363	12110381	AAGTTACCTTGTGGTCAGG		59	12110404	12110423	ATATAAACGACGAGACCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	w-cup	FBgn0032269	FBtr0080132	2	1	1	135	2L	10576864	10576882	TCAAGAAGACAATTCGCGA		59	10576687	10576771	CTGTGACTAGTAGATGTAGATAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myo31DF	FBgn0086347	FBtr0080035,FBtr0080036	1	2	2	101	2L	10494502	10494520	TGGATATTTACGGCTTCGA		58	10494359	10494440	GCACCAGTTCTATGAATAACTG		59	NA	
Drosophila melanogaster	50	Grip75	FBgn0026431	FBtr0080033	3	1	1	105	2L	10483619	10483696	GAACTTCCAGATAGTTTGCA		57	10483764	10483782	AATACTTCTCCAGACGTCC		58	NA	
Drosophila melanogaster	50	CG6232	FBgn0032252	FBtr0080029	1	1	1	80	2L	10446357	10446531	TATGTCAAGGATGACGCTG		59	10446574	10446593	TACGGATTCGTTTAGTGTGG		59	NA	
Drosophila melanogaster	50	CG31720	FBgn0051720	FBtr0113413,FBtr0089788	3	2	2	218	2L	10236542	10236939	TCAAAGCCCTCAGATTTCG		59	10236224	10236242	CATCTTGAAGCGAATCCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Aldh	FBgn0012036	FBtr0079806	3	1	1	136	2L	9390125	9390252	GTCTATCTTGCCAGTCTGG		59	9390352	9390370	GGAATAGTCTTGCCATGGT		59	NA	
Drosophila melanogaster	50	CG13108	FBgn0032100	FBtr0079773	1	1	1	60	2L	9164833	9165025	TACCTCCAGTTCTGTATATTCC		58	9165046	9165064	GACCTCTATGAAGTCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cka	FBgn0044323	FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538	2	4	4	99	2L	8036253	8036272	AACATCAATGGAAACGAGAG		58	8036391	8036411	CCACGATTATTTCATCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34132	FBgn0083968	FBtr0110879	2	1	1	89	2L	7885725	7885743	AATTGCTCACGCAAATGAC		59	7885795	7885886	AAATGCATTTCTGTTCGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7149	FBgn0031948	FBtr0079496	3	1	1	80	2L	7788085	7788163	TACTACAACTTGGATGGCA		58	7788023	7788041	ATGATCGAATAGCTCTCCC		58	NA	
Drosophila melanogaster	50	chm	FBgn0028387	FBtr0079443	3	1	1	83	2L	7413998	7414082	AGACTCGAAGGTAAAGCTG		59	7414129	7414147	AAATCATAGTCAGGCACCA		58	NA	
Drosophila melanogaster	50	Pvf3	FBgn0085407	FBtr0112612,FBtr0112611	2	2	3	137	2L	7107248	7107268	ATCCTTCCAAGATCTATACGC		59	7100546	7107149	TGCTCTTCACGAAGAAGTG		59	NA	
Drosophila melanogaster	50	Pcp	FBgn0003046	FBtr0079388	2	1	1	67	2L	7021722	7021811	TGCTTGTGAACTTCATCGT		59	7021842	7021860	GTCCGGAATGTAGGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13771	FBgn0031844	FBtr0079323	3	1	1	118	2L	6663058	6663140	TTCTTGCAGTGTGGATCTG		59	6662958	6662976	CTTGTCTTGCAAGAAGTGG		58	NA	Nonspecific
Drosophila melanogaster	50	eIF-4a	FBgn0001942	FBtr0079178,FBtr0079175,FBtr0079177,FBtr0079176	2	4	4	90	2L	5984935	5985036	ATTCATAGAATTGGTCGCG		57	5985089	5985108	TATCCTTAAGGATTCGTCGA		57	NA	
Drosophila melanogaster	50	CG34351	FBgn0085380	FBtr0112561	3	1	1	101	2L	4717851	4719812	CGGCTATTATGAGAACCGA		58	4719876	4719895	AATTCCTCCTCGTTGAAGTC		59	NA	
Drosophila melanogaster	50	CG34177	FBgn0085206	FBtr0112368	2	1	1	197	2L	4434383	4434401	ACCCTACTTTGCAACTAGG		58	4434562	4434631	ATTGGGATAGGCTGAATCC		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG3702	FBgn0031590	FBtr0077477	1	1	1	60	2L	4225327	4225345	GCCTACTTTGTCTACTCGT		58	4225285	4225303	TGAGCACAAATGAGTACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16704	FBgn0031558	FBtr0077550	3	1	1	172	2L	3692499	3692517	ACTCATCTGCTGTCTTGTG		59	3692230	3692249	GATTATTGTTTCCGTGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9662	FBgn0031529	FBtr0077594	2	1	1	84	2L	3376537	3376555	GATTCAGCATTCCAATGCC		59	3376411	3376490	TATATGATACCGCCTGTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or23a	FBgn0026395	FBtr0077698	1	1	1	60	2L	2654853	2654925	GTATAGATTACTCGATGTGACC		57	2654945	2654964	CATAAACTGCACCATCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17242	FBgn0042188	FBtr0077803	2	1	1	60	2L	2268479	2268498	CCAATAATCGGCTGTATGGA		59	2268438	2268456	GATTTATTGAGGACGTCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	frtz	FBgn0086698	FBtr0077911	3	1	1	135	2L	1712034	1712054	AAGAGAAATGGTTACTCCAGG		59	1711859	1711939	TAGTCACATTGGTCGTAATGG		59	NA	
Drosophila melanogaster	50	CG12237	FBgn0031048	FBtr0074761	1	1	1	63	X	19536354	19536372	TCATCAGTGACTCGAACAG		59	19536309	19536327	CAATCGGCCAAGTTATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5445	FBgn0030838	FBtr0074425,FBtr0074427,FBtr0074426	2	3	4	61	X	17197412	17198114	GATGAGTAACTGGAGCCTG		59	17198139	17198157	ACTGTAAGCTGCAGAAGTC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG13404	FBgn0030559	FBtr0073921	1	1	1	66	X	14159851	14159869	GTTACTATACGGACTGGGC		59	14159716	14159734	ATAATCATGTTCGCCTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hep	FBgn0010303	FBtr0073747	3	1	3	122	X	12976564	12976652	TTAGTAGCATCGGTCAATCG		59	12976461	12976480	CATCCGTGATCAATGTTTGG		59	NA	
Drosophila melanogaster	50	fne	FBgn0086675	FBtr0073712,FBtr0113493	1	2	2	89	X	12837475	12837558	ATATTTCTGGTCTATCGAAGGG		59	12837608	12837626	TCTTGCCATTCAACTCCTG		59	NA	
Drosophila melanogaster	50	CG1791	FBgn0030163	FBtr0112968,FBtr0071429	2	2	2	101	X	9858700	9858718	GATAATGAGAAACTCGGCG		58	9858501	9858577	ATGAATTGTACACGTGCTG		58	NA	
Drosophila melanogaster	50	c12.1	FBgn0040235	FBtr0071324	3	1	1	105	X	9212502	9212520	ACTGATGAACTATGAGCCC		58	9212415	9212433	AAAGACCACATCATCGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7246	FBgn0030081	FBtr0071353	3	1	1	75	X	8974529	8974547	TATACGAGAAGATGCTGCT		57	8974408	8974426	AACTCGTACAGCCATAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12075	FBgn0030065	FBtr0071253,FBtr0071254	1	2	2	63	X	8763928	8764014	CAACAGTTCCAGTGATGAC		58	8764041	8764059	CTTCAGAGCAATAACCGAG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG3588	FBgn0025643	FBtr0070549	3	1	4	64	X	2817770	2817788	AGAACGGAACATCATCCAG		59	2817814	2817834	GCGATTGAAGTACACATACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40629	FBgn0085505	FBtr0113918	1	1	2	160	U	2572876	2572894	CAACTTCTTCATGCAGCTG		59	2573059	2573077	ACTTGTTGACGGTGTATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fur1	FBgn0004509	FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986	1	5	6	103	3R	21180026	21181954	GCTATATGGCACAAATCACAC		59	21179943	21179961	ATTGAACTGGTTCGACTGG		59	NA	
Drosophila melanogaster	50	CG17751	FBgn0038717	FBtr0083778	2	1	1	61	3R	15433733	15433753	TTTATGGACACCCAGTATGTC		59	15433832	15433851	TGTTGTGGACTCAAGTACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rpb4	FBgn0053520	FBtr0100273,FBtr0083604,FBtr0100275,FBtr0083603	2	4	5	99	3R	14080129	14080147	GACAGAGGAATTGCAACTC		58	14079990	14080008	CATTATGAGACCGTGTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	3	7	12	160	3R	11122417	11125003	AGAAATACGATGAGGTTGC		57	11126526	11126544	CTTCTCCTCAGAGACTTCC		58	NA	
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089963,FBtr0089966,FBtr0089967,FBtr0089962,FBtr0089961,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	2	10	12	205	3R	11120874	11120892	TTGCTCGAAGAAGACTTGG		59	11122404	11122423	TATTTCTTGTCAGCCTCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8773	FBgn0038135	FBtr0082739	3	1	1	106	3R	9122693	9122791	GAGCGAAATCACTGTAACTG		58	9122860	9122878	GATCATTCCACAGATCGGT		59	NA	
Drosophila melanogaster	50	CG14736	FBgn0037986	FBtr0089692,FBtr0089691	2	2	3	80	3R	7866654	7866732	TAGGTCGTCTTAGGAAAGGT		59	7866773	7866793	TATCTACTCTGTGAGTCTCGT		59	NA	
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082208	3	1	8	83	3R	5841637	5844227	GCCAATATTAGTTCCAAGGTG		59	5841574	5841592	GTAGACGGTTTGCTTACAG		58	NA	
Drosophila melanogaster	50	exba	FBgn0037346	FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745	1	7	7	82	3R	1423978	1423999	GGTTCTATTATTCGTAAAGGGC		58	1423651	1423935	AACCGTTGACTAACCAGAG		59	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897	1	5	15	192	3R	110112	120843	ATTAAGTGCCGTTAAAGGC		58	120999	121298	GATGTTGTACTTATCGCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	alpha-Cat	FBgn0010215	FBtr0070038	2	1	1	80	3L	23324106	23327475	GATAATATGAGGCAATTCGGAC		59	23324047	23324066	GGGATCCTTAAGTTCTTGCT		59	NA	
Drosophila melanogaster	50	CG32169	FBgn0052169	FBtr0113428,FBtr0075285	1	2	3	80	3L	17061140	17061158	TTGATCTAACCAATGGGCA		58	17060464	17061099	GATAGTTGTTCATCACTGACAG		58	NA	
Drosophila melanogaster	50	CG17033	FBgn0036546	FBtr0075510	3	1	1	89	3L	15950151	15950242	CAACCTACTGTCCAGACTG		59	15950295	15950313	AAATGGGAATTGTAGGCGT		59	NA	
Drosophila melanogaster	50	CG7857	FBgn0026738	FBtr0075605	1	1	1	60	3L	15497177	15497198	TCGCTTATCTCATACATGATCC		59	15497138	15497156	CGAATTGTTGGTCGTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10418	FBgn0036277	FBtr0075954	3	1	1	92	3L	12329936	12330017	AACGACCTCAGCATATGTG		59	12330073	12330091	GTACTTGTCCGGATCTGTG		59	NA	
Drosophila melanogaster	50	CG16711	FBgn0036032	FBtr0076397,FBtr0076396	1	2	2	60	3L	9701212	9701233	CATTAAATCCCTCTCGAATCTG		58	9701254	9701272	CACATTGAGAAGTGGAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5280	FBgn0035952	FBtr0076552	2	1	1	63	3L	8982550	8982569	AGGAGGATCTCATAAACGAG		58	8982440	8982458	ATTTCCGTCAACCACTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7207	FBgn0027569	FBtr0076717	1	1	1	101	3L	8276303	8276384	GCTCTGTTGTTAATCCTGGA		59	8276221	8276239	TTACGTATCCCGTAAAGCG		59	NA	
Drosophila melanogaster	50	scf	FBgn0025682	FBtr0089942,FBtr0089940,FBtr0089941	3	3	3	60	3L	1299623	1299641	TGGTTATTTGAACGAGGAG		57	1299665	1299683	CGAATGATCGAAGTCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13877	FBgn0035112	FBtr0072495	2	1	1	79	3L	218187	218292	ACATATGCACTCTTGTGGT		58	218335	218353	CTGAGACTTAGGATGCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mthl8	FBgn0052475	FBtr0072462	1	1	1	81	3L	25273	25352	TATTCTACCAAGTTTGGCGT		59	25394	25414	GCTCAAGTACAGCTTAAATGC		59	NA	
Drosophila melanogaster	50	l(2)tid	FBgn0002174	FBtr0089505,FBtr0089503,FBtr0089504	1	3	3	74	2R	19596287	19596305	AAACCAAAGCGAAAGAAGG		58	19596343	19596361	TCTTGCTTATGAAGCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	asrij	FBgn0034793	FBtr0071902	2	1	1	292	2R	18774490	18774508	TCAGTTACCAGCAGAAGTG		59	18774764	18774843	CATTGAACCAGAGTCCAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	aPKC	FBgn0022131	FBtr0110996,FBtr0110998,FBtr0110999,FBtr0110997,FBtr0110995,FBtr0087426	1	6	6	82	2R	10835449	10835469	TCTTGCTCTATGAGATGTTGG		59	10835330	10835405	GTCCTCAGTGTTCTGATCG		59	NA	
Drosophila melanogaster	50	mars	FBgn0033845	FBtr0087668	1	1	1	60	2R	9391978	9391996	TTTACGCGTTACTCAGTGG		59	9392020	9392038	GCTGAGGATCCAAGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17580	FBgn0040755	FBtr0087857	2	1	1	79	2R	8694698	8694717	TATACTCCACAGAGTTGGTG		58	8694816	8694834	TTCAAACAGGAGAACAGAC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG30054	FBgn0050054	FBtr0114522	2	1	1	191	2R	8511580	8511660	GGAGAGCATAGTGAACTGG		59	8511875	8511893	AATTCGACCTATGTCACCC		59	NA	
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0100449,FBtr0081211	2	2	6	80	2L	19419921	19419939	GTACGGAAAGATCGATCCG		59	19410634	19419878	AATAGAGCATATCCTGGCAG		59	NA	
Drosophila melanogaster	50	cana	FBgn0040233	FBtr0091678	3	1	1	85	2L	11276002	11276020	AAGTAGAAATCGATCGCCG		59	11276069	11276148	AGTTTGAGCTTCCAGATCG		59	NA	Nonspecific
Drosophila melanogaster	50	IP3K1	FBgn0032147	FBtr0079869	2	1	1	102	2L	9786714	9786732	TGAGTCTACAGAGATCGGG		59	9786798	9787163	AGCTCTAGGGCATTAATGG		58	NA	
Drosophila melanogaster	50	CG32984	FBgn0052984	FBtr0079758	1	1	1	108	2L	8965699	8965781	ATGGGCTATAATAAGGTAGCTG		59	8965850	8965868	CTGGTTGAGTTGTATCGCA		59	NA	
Drosophila melanogaster	50	Herp	FBgn0031950	FBtr0079493,FBtr0079494	2	2	2	87	2L	7797320	7797411	GGGTGCGATTTATCTATATCAC		58	7797254	7797272	GCCAGCATTATTGTTACGA		58	NA	DesignRelaxed
Drosophila melanogaster	50	Tsp	FBgn0031850	FBtr0079313,FBtr0079311,FBtr0114488,FBtr0079312,FBtr0079314	3	5	6	105	2L	6701761	6701779	TGGATGTTGCATCACTCTC		59	6700488	6700562	CGACGAGGTCTAATGTGTC		59	NA	
Drosophila melanogaster	50	CG3714	FBgn0031589	FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077482,FBtr0077479	1	5	6	114	2L	4190819	4192645	AGAAGTCATTCAGGAGTGG		58	4190723	4190741	GAAAGATAGGCCAGATCCC		59	NA	
Drosophila melanogaster	50	CG9662	FBgn0031529	FBtr0077594	1	1	1	65	2L	3376587	3376605	GTATAACCTGCCCTTCCAC		59	3376540	3376558	ATTGGAATGCTGAATCTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4270	FBgn0031407	FBtr0077755,FBtr0077754	1	2	2	158	2L	2263727	2263745	TAAATAAGCTGGCTCAGGA		57	2263925	2263945	AGCTATTGATTTCCCGATACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089431,FBtr0089436,FBtr0089435	3	3	10	118	2L	111010	111030	GATTGGAAGACACTTAACCTG		58	111110	112700	AACATGATACCCTGGTCAC		58	NA	
Drosophila melanogaster	50	Hs3st-B	FBgn0031005	FBtr0074676	3	1	1	201	X	19144210	19144228	GTCTACCACATGAATCCGG		59	19144944	19144962	CCAGATAGCGTGCATAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15221	FBgn0030331	FBtr0112979	2	1	1	181	X	11628579	11628597	AACATCTGGATGCTGATCG		59	11628742	11628832	ATACCAATCGCCATAGCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG17626	FBgn0040032	FBtr0113755	2	1	2	71	U	251491	251511	ACAACTATCGTCTCAATAGGC		59	251544	251607	CTTTGTGAAGGTGGTTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083265,FBtr0083261,FBtr0100333,FBtr0083263	1	7	8	115	3R	12125399	12126972	TGGTTCAGTACAGGTTGTG		59	12127051	12127069	TTTCATCGACCACTTCGAC		59	NA	
Drosophila melanogaster	50	yellow-e2	FBgn0038151	FBtr0082758	3	1	1	131	3R	9232074	9232350	TTATTATCCACCTAATGGCGG		59	9231963	9231981	GGATAGGCCTGGATTTCAC		59	NA	
Drosophila melanogaster	50	CG11656	FBgn0038109	FBtr0082698	1	1	1	129	3R	8835796	8835893	TTATCTCAAGAGGCTGCTG		59	8835986	8836004	TCTTCTTGGAACTCCTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4820	FBgn0037876	FBtr0113221,FBtr0082345	1	2	2	148	3R	7043274	7043350	GTGAGACATGAAAGGGAGG		59	7043518	7043536	GAAGAGTTGATGTGCTGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1142	FBgn0037504	FBtr0081559	3	1	1	131	3R	3298562	3298993	TCATCAACAGAGCTGAACG		59	3298449	3298468	ATTGCTTAGGGTTCAGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17027	FBgn0036553	FBtr0075516	1	1	1	69	3L	15974053	15974302	GACTTGTTGCCTACTCCTG		59	15974335	15974353	TAGAAGGCATCCAGATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32068	FBgn0052068	FBtr0113421	2	1	1	96	3L	10656819	10656900	GATGATGAGATCACATGCTC		58	10656959	10656977	GAATTTCCTCATCCGTGTG		58	NA	
Drosophila melanogaster	50	CG6527	FBgn0036085	FBtr0076291	3	1	1	89	3L	10551831	10551911	TACAAGGTGCAATGTACAG		57	10551760	10551778	TATGAGGACATGTGAGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10289	FBgn0035688	FBtr0077019	2	1	1	96	3L	6165386	6165466	TTACCTTCACAGATGAGCC		58	6165308	6165326	ACAGTGATCACAGTCTCCT		59	NA	
Drosophila melanogaster	50	Lcp65Ag3	FBgn0086611	FBtr0077061	1	1	1	74	3L	6123688	6123706	ATAAGAACGGATTCCAGCC		59	6123632	6123650	ACAGTGAAAGCAACTTCAC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG18418	FBgn0035568	FBtr0073366	1	1	1	60	3L	4689758	4689778	CCTTGTACAATGGATTGAGTG		58	4689718	4689736	ATCTTGGCTGATGTGTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr64a	FBgn0045479	FBtr0073194	3	1	1	92	3L	4028241	4028260	GCCTGATATTCCAGATGACC		59	4028315	4028403	TTCCAGCCATTCCAAAGAG		59	NA	
Drosophila melanogaster	50	CG3548	FBgn0035033	FBtr0072315	2	1	1	60	2R	20489012	20489030	CGGAAGCATACAGGATCAG		59	20489054	20489072	GACATTGTTGTAGTCCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tud	FBgn0003891	FBtr0071582	2	1	1	89	2R	17072518	17072592	GTCAATGTGACAAATGTACAGG		59	17072639	17072660	GGCACGATTATAAGGATTTGTC		59	NA	
Drosophila melanogaster	50	l(2)05510	FBgn0028622	FBtr0086258	3	1	1	74	2R	16451345	16451363	CAAGGTCTACGAGATCTCG		58	16451216	16451308	AGGACCTCATTCTTGTTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	mip40	FBgn0034430	FBtr0086560	3	1	1	69	2R	15178917	15178935	GTACCTCCGATCTTCTGTC		58	15178866	15178885	ATATGCTTTATCCAGTGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	3	8	8	99	2R	14032395	14032483	AGGAAAGAATTCTGAGAAGC		57	14032544	14032563	CTCAATCATCGGATACAGAC		57	NA	
Drosophila melanogaster	50	CG10151	FBgn0033960	FBtr0087471,FBtr0087472	2	2	3	81	2R	10641389	10641503	ATCACGAGAAAGCAATGAG		57	10641326	10641345	AAACGATTGTGTTGGATCTC		58	NA	
Drosophila melanogaster	50	CG12129	FBgn0033475	FBtr0088395	2	1	1	149	2R	5921048	5921118	AAGAGCCGGATCTTTATGG		59	5921284	5921302	TCGTAGATCCTTTCATGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	d4	FBgn0033015	FBtr0086083,FBtr0111115,FBtr0086082	1	3	3	79	2R	1182527	1182545	CAAACGTAGAGGGTACTCC		59	1182640	1182658	ATCAGATTCTCCCTCAACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17665	FBgn0039997	FBtr0111269,FBtr0111268	3	2	2	86	2R	123439	123513	ACAATTCTAGCGAGGAGGA		59	123371	123392	GTCAGTCAGAATCATTGTTAGC		59	NA	
Drosophila melanogaster	50	Rpb11	FBgn0032634	FBtr0081011	2	1	1	82	2L	17409917	17409935	ATTATTCTCCGCAGGAAGC		59	17409791	17409871	GTCTTTGAAACGCTCTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33309	FBgn0053309	FBtr0080674,FBtr0100163	3	2	2	60	2L	14811306	14811327	TGAATCCCGAGATAGTTAAACC		59	14811347	14811366	GGCGATATCCTTAACTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33309	FBgn0053309	FBtr0080674,FBtr0100163	1	2	2	100	2L	14810811	14810889	CGATAATAGCCAACGAGAC		57	14810953	14810971	CTTTCGACCTAGACCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rho-6	FBgn0032415	FBtr0080360	3	1	2	74	2L	12131336	12131355	CCTACTGACCTATATGCTGC		59	12131055	12131300	CCTATAAAGCACTGAAAGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	tRNA:CR31242	FBgn0051242	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-6-1	FBgn0046819	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi28S-3316a	FBgn0082972	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	su(f)	FBgn0003559	FBtr0113735,FBtr0113732,FBtr0113733	3	3	5	80	XHet	77307	77325	ACTATATCGCATTCGAGCA		58	77366	77445	CGTTCATGTAATCCTTAGATCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG12061	FBgn0040031	FBtr0113683,FBtr0113682	2	2	3	116	XHet	22997	23088	TACTCAACCGACCAAACTG		59	23168	23186	GCCTCATACCACATAACCA		59	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-2876	FBgn0086671	FBtr0091623	2	1	1	65	X	17038913	17038933	CTATCTAATATCCGTAGCGTC		57	17038868	17038886	GTCTCTTCGTTTCATACGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0196	FBgn0027279	FBtr0077355,FBtr0077356,FBtr0112508,FBtr0077357,FBtr0077354	3	5	5	83	X	21898310	21898330	CATATTTCGGTGCATGTATCC		59	21898374	21898508	GAGTGCAATCTTAGCAAACC		59	NA	
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572	2	5	5	81	X	20644231	20644249	ACGCTAATATACAGGGTGG		58	20643790	20644186	GACGCACTAACCTAAATCG		58	NA	
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572	3	5	5	82	X	20644231	20644250	AACGCTAATATACAGGGTGG		59	20643790	20644186	GACGCACTAACCTAAATCG		58	NA	
Drosophila melanogaster	50	CG14231	FBgn0031060	FBtr0074814	2	1	1	96	X	19594805	19594823	CAATTGAGTACTGCCTCCT		58	19594727	19594745	TATATGGCATCGTTGTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdc42	FBgn0010341	FBtr0074751,FBtr0074752	3	2	2	64	X	19592046	19592065	TGCTCATCTCGTATACAACC		59	19592092	19592110	ATAGTTGTCGAACACCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CoRest	FBgn0053525	FBtr0091483	3	1	5	148	X	19418058	19418078	CTACTACTCGTGGAAGAAGAC		59	19418187	19422683	GCCTATTCTTCTTGTCATCG		58	NA	
Drosophila melanogaster	50	CG7453	FBgn0030991	FBtr0074667,FBtr0074666	2	2	2	64	X	19074921	19074939	ACTGATATACACCAGGAGG		57	19074967	19074985	GTACCTGGCTTATCCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7288	FBgn0030969	FBtr0074643	2	1	1	90	X	18753660	18753735	GAACTTTCCCATCAAGCAC		59	18753786	18753807	CACCAGATTGTATTTCGTATCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG6023	FBgn0030912	FBtr0074580	1	1	2	119	X	18209706	18209724	ATTCTTGGAGCGACTACAG		59	18209360	18209623	TTGGAGGTAGAAATGCGAC		59	NA	
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089658,FBtr0089660,FBtr0089662	3	3	7	103	X	17824694	17824712	AATTACTTCTATCACCGCG		57	17824461	17824627	AAATGTTGACCTAGTGCAC		57	NA	
Drosophila melanogaster	50	CG4678	FBgn0030778	FBtr0074320,FBtr0074319	1	2	3	108	X	16602677	16602698	GGATTGGATATCCAAGATTCAG		58	16602767	16603420	GTAGGTCTGGAACATGGAG		59	NA	
Drosophila melanogaster	50	CG13011	FBgn0030771	FBtr0074318	3	1	1	182	X	16573632	16573650	CTACAGTCTCATTCGGCAG		59	16573938	16574031	GCATAGCCCATGTAATAGCA		59	NA	
Drosophila melanogaster	50	CG4239	FBgn0030745	FBtr0074270,FBtr0074269,FBtr0074268	3	3	3	212	X	16281482	16281500	AAAGGTGTACGATGGTGTG		59	16281737	16281755	AGCACAAAGATGATCGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dsp1	FBgn0011764	FBtr0089259,FBtr0089263,FBtr0089261,FBtr0089262,FBtr0089260	3	5	5	79	X	16230977	16230996	AAGAAACATCCCGATGAGAC		59	16231038	16231132	TTGTCCACCATTGTCTTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9170	FBgn0030716	FBtr0074154,FBtr0074153	1	2	2	89	X	15875695	15875779	AAGATATGCTACTCGGAGG		57	15875624	15875642	TATGGCATCTAGTGGATGG		58	NA	
Drosophila melanogaster	50	CG9056	FBgn0030702	FBtr0074167	2	1	1	81	X	15778401	15778487	GAGGATCTTGAGTTTGCCA		59	15778338	15778356	AGGTACAAGTTAGCTCGTC		58	NA	
Drosophila melanogaster	50	CG8206	FBgn0030679	FBtr0074085	1	1	1	62	X	15633866	15633884	ACAATCTGGGACTGTTCAC		59	15633910	15633928	TGGTACTGATTCCAGAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lsd-2	FBgn0030608	FBtr0073967	3	1	3	95	X	14968003	14968023	GCCTCCTTGAATACTACTTCC		59	14967383	14967401	CAGAACTCTTGCCATTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32595	FBgn0052595	FBtr0073941	3	1	1	60	X	14612827	14612847	CACTGGTATTCATTTACTGGG		58	14612787	14612807	ATTGTCGTAGGTTAGTACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0469	FBgn0040153	FBtr0113318	3	1	2	178	X	14100668	14100687	CAATAACTTTGCCGACAAGG		59	14099474	14100397	CTCTGGTAACGATGAGCTG		59	NA	
Drosophila melanogaster	50	ben	FBgn0000173	FBtr0073855	2	1	1	60	X	13892369	13892387	CGGAGGACTATCCAATGTC		59	13892411	13892429	TTCGGATGGTAGATCTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33174	FBgn0053174	FBtr0073826,FBtr0073825	3	2	2	81	X	13696194	13696278	TCTCAAGAGCTTGGTTATCC		59	13696322	13696340	TGCAGTGGTGTAGTAATGC		59	NA	
Drosophila melanogaster	50	Rtc1	FBgn0020909	FBtr0073820	3	1	1	97	X	13652266	13652284	AGACTCCAGCTATCAATGG		58	13652398	13652416	GAACGGTGTAATTGGACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15747	FBgn0030474	FBtr0073766	1	1	1	60	X	13232590	13232608	AGCTGCTCCTCAATTTCAG		59	13232631	13232650	TTCCATTAGACTAGGACCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12716	FBgn0030439	FBtr0073752	2	1	1	118	X	12869516	12869597	GAAACAAGTCCTGAGAATCC		58	12869417	12869435	TTGAAATTGAGGCGTTGAG		58	NA	
Drosophila melanogaster	50	CG32649	FBgn0052649	FBtr0073697	2	1	1	60	X	12794118	12794136	CTATGCAAGGTGAGAGGAG		59	12794076	12794095	TGGAATCTTGTATGCTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489	2	8	12	100	X	11291936	11292011	ATATAACCAGAGAACCGCG		59	11292075	11292093	GGACACATAGATACCCTGG		58	NA	
Drosophila melanogaster	50	CG1737	FBgn0030293	FBtr0073453	3	1	1	60	X	11248059	11248079	AAGAAGATCACCTGCTATGAG		59	11248101	11248119	TCGACAACATATCCTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11106	FBgn0030280	FBtr0073446	3	1	1	73	X	11096549	11096568	CAATTACTTTCAACGGATGG		57	11096604	11096622	ATTGAGGACAGTAGTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15203	FBgn0030261	FBtr0073392	3	1	1	114	X	10960950	10961813	ATACTTATCGAGGGTTGCG		59	10961890	10961909	TTTGCTTGCACTTGTATCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	1	8	9	94	X	10692567	10692660	GAATAAGGGTGAAATTTGCC		57	10692492	10692510	GCATGATCCGTTTAATGGT		58	NA	
Drosophila melanogaster	50	CG2898	FBgn0030195	FBtr0071445	2	1	1	62	X	10269618	10269636	CATCCGTCAACAGTCTACC		59	10269662	10269680	TTCGTTATTACAGCACAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-lys	FBgn0027084	FBtr0071367,FBtr0071366	2	2	2	71	X	9501701	9501721	CGCTATCTTGATCTCATTCTC		58	9501589	9501668	GTACGAGATGATCTTGGCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	su(r)	FBgn0086450	FBtr0071338,FBtr0071337	2	2	2	230	X	9091234	9091310	ATCGATGATGACATGTGCA		59	9090948	9090968	GGTGTAGAAGATCTTCTCCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	His3.3B	FBgn0004828	FBtr0071345,FBtr0071347,FBtr0071346	1	3	3	217	X	9048445	9048463	GATTTCAAGACCGATCTGC		58	9048107	9048125	ACGACAGTGATCGAATCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0071296,FBtr0112965,FBtr0071294,FBtr0071298,FBtr0071295,FBtr0071297	2	6	6	87	X	9008595	9008676	ACGAGGATGAGTTTGAACG		59	9008727	9008745	CTTGTGGTCGAGACTTGAG		59	NA	
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071271,FBtr0071270	2	2	10	101	X	8770411	8770431	CGTGTAAAGAAGTATGTGGAC		58	8770084	8770349	TGATCCAGTCATATCATCGG		58	NA	
Drosophila melanogaster	50	CG12065	FBgn0030052	FBtr0071217,FBtr0071215,FBtr0071214,FBtr0071216	2	4	4	96	X	8481474	8481494	ACTACACGGACTATAAGAAGC		59	8481552	8481632	GGTTTCTCCTTGCTATTGC		58	NA	
Drosophila melanogaster	50	CG1440	FBgn0030038	FBtr0071197,FBtr0112961,FBtr0112962	2	3	3	92	X	8334502	8334583	CGTATCCGTGGATAAGAGC		59	8334639	8334657	TTCATCACCAGATAGCCCT		59	NA	
Drosophila melanogaster	50	CG32712	FBgn0052712	FBtr0071247	3	1	1	61	X	8327293	8327311	CATCAGCATGAACCATTCC		58	8327250	8327270	TAGTACAAGTGGTAGACAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15345	FBgn0040928	FBtr0071176	1	1	1	60	X	8291639	8291661	CTCTCAGAGGAAGAAGATTACAG		59	8291601	8291619	TCTCTTCAATGTCCTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sws	FBgn0003656	FBtr0071125	3	1	2	83	X	7854138	7855220	TCACACCAATGGATCTCTG		58	7854073	7854092	TCTTTAGGATCGCATAACGG		59	NA	
Drosophila melanogaster	50	CG15324	FBgn0029966	FBtr0071087	3	1	1	60	X	7769159	7769177	CGATCATACTTTCGCTTGG		58	7769200	7769219	CATTTCTCTTGTACGGACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33691	FBgn0064122	FBtr0091671,FBtr0091673	1	2	3	60	X	6771757	6771777	CGCTAGCTAGCAATAATTCAG		58	6771798	6771817	TTGTTATTCCGTCGTACTCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	C3G	FBgn0026145	FBtr0070975,FBtr0070976	1	2	2	91	X	6677060	6677078	ATCATGAAGCATCTACGCA		59	6676920	6677007	CACTCCAATCTTCTTATGGGA		59	NA	
Drosophila melanogaster	50	CG5928	FBgn0029836	FBtr0100295,FBtr0070871	1	2	2	80	X	5962705	5963096	ACCTTTATTCAGAAGCCCA		58	5963139	5963158	TTTGCCTCCTATGATATCCA		57	NA	InUTR
Drosophila melanogaster	50	CG3726	FBgn0029824	FBtr0070858	1	1	1	141	X	5835115	5835201	TAAGCATCCTTACAGTGGC		59	5835359	5835378	CAAGTAGGGATTGGTTTGGA		59	NA	
Drosophila melanogaster	50	mof	FBgn0014340	FBtr0070829	2	1	1	60	X	5768536	5768555	AGCAGATCACAATCAAGGAG		59	5768495	5768513	TAGATAATGTCGTCGTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3033	FBgn0029818	FBtr0070830	2	1	1	109	X	5765455	5765473	TGACATTCTACCAGTTCCC		58	5765295	5765382	GCCATAAATCACGGAATCG		59	NA	
Drosophila melanogaster	50	CG12239	FBgn0029810	FBtr0070814	3	1	1	65	X	5686776	5686794	GAAGATCGAGAAGACCGAC		59	5686822	5686841	ATCTTCACGAGATTCACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070738,FBtr0070739,FBtr0070740,FBtr0100408	1	4	4	214	X	4962802	4962820	CAGTATGCCTACAAGGAGC		59	4963094	4963112	TAATTGTGGACTGGCATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	cib	FBgn0026084	FBtr0070641,FBtr0070639	2	2	3	67	X	4004033	4004192	CGATAAGGAAGCCATCGAG		59	4004223	4004241	CATCAAAGTTCTCGATGCC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG10803	FBgn0029666	FBtr0070569	2	1	1	99	X	3381473	3381494	CATAGCGTCTACGAAATATCCT		59	3381552	3381638	AAAGGTATTTGCCCAGATAGG		59	NA	
Drosophila melanogaster	50	Sgs4	FBgn0003374	FBtr0070524	1	1	1	60	X	3144872	3144890	ACCCAAGTGTAAATCCGAC		59	3144914	3144932	CTTTGGCTTAGATGTGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2694	FBgn0024991	FBtr0070482,FBtr0070483,FBtr0070481	3	3	3	104	X	2609385	2609403	GAAACCGACATGAAGACAC		58	2609550	2609569	CATCTCGTTCAGATTCTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ilp6	FBgn0044047	FBtr0070406	1	1	1	107	X	2226037	2226055	GAATACGAACAGAGACGCA		59	2225870	2225969	GAAACTGTTGGGAAATACATCG		59	NA	
Drosophila melanogaster	50	CG34052	FBgn0054052	FBtr0100107	2	1	1	96	X	2216179	2216198	GTACGGTACAGTAAGGACTG		59	2216038	2216056	TTTGGGCTGAAGTACAGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Nmd3	FBgn0023542	FBtr0070425	2	1	1	63	X	2077150	2077168	CTACCACGAGTTTCTTGAC		57	2077105	2077123	ATAGATGTTGACCTGACCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Actn	FBgn0000667	FBtr0070343,FBtr0070345	1	2	3	80	X	1924296	1924317	GAGAATCTTAATACTGCCTTCG		58	1923949	1924258	GTTGATCAAATCATCTGGATCC		59	NA	
Drosophila melanogaster	50	CG3740	FBgn0023530	FBtr0070283	1	1	1	163	X	1562735	1562753	TCATCCTAAACGACCTGAC		58	1562590	1562608	CACGAATGACATGACAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	br	FBgn0000210	FBtr0070267	2	1	7	138	X	1531145	1531163	CCCAATATCGATCCCTCAG		58	1554704	1554722	TTAGAGAACGCACGTTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	pck	FBgn0013720	FBtr0070256,FBtr0070255	1	2	3	83	X	1365311	1365329	TTAAGGACTTCGTGTACCC		58	1365376	1365453	TAACGTAATACTCGTGCGA		58	NA	
Drosophila melanogaster	50	CG32813	FBgn0052813	FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219	1	4	6	222	X	1283913	1283931	CAACCATTCGTTCATGGAC		59	1284335	1284353	GATAAGGATCACGTCCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3638	FBgn0026875	FBtr0070248,FBtr0070246,FBtr0070247	1	3	4	168	X	1120310	1120891	CATCGAGTTGCAAAGTCTG		59	1120160	1120178	CATCAGCGTAATGATGACC		58	NA	
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	2	8	8	61	X	551358	551376	GGATGATGAGAGCAAGGAG		59	551401	551419	TTAGGAAATCTGCATCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ewg	FBgn0005427	FBtr0100582	2	1	8	186	X	167373	167393	GATCAACTGCTACAAGTACCA		59	165900	167226	AACAATCAGATTGCTGTTGC		59	NA	
Drosophila melanogaster	50	CG40955	FBgn0085544	FBtr0113957	2	1	1	85	U	9989962	9989980	GAGTCATCGATCCATCAGC		59	9989895	9989913	ATTCCTAGCCAAAGCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40894	FBgn0085532	FBtr0113945	1	1	1	60	U	8953577	8953596	ATGAGTTGATGACGAAACTG		58	8953536	8953557	TCCATTATATCGTAGTCGTCTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41534	FBgn0085674	FBtr0114122	3	1	1	60	U	8549940	8549958	TTACGATGAGTGCAAACGA		59	8549980	8550000	GTAGCAATCTACAAACATCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0100344,FBtr0100346,FBtr0100343,FBtr0089327	1	4	7	95	4	1129117	1129138	CCGTTAGTTCCTATTAGTATGC		58	1129194	1129748	GTCAAATGCTAGAGCTGTG		58	NA	
Drosophila melanogaster	50	CaMKII	FBgn0004624	FBtr0089217,FBtr0089218,FBtr0100148,FBtr0089219,FBtr0100146,FBtr0100147	1	6	6	80	4	1068496	1068515	GGATATCTGTCTCCTGAGGT		59	1068342	1068456	GTAAAGAATAACTCCACATGCC		59	NA	
Drosophila melanogaster	50	toy	FBgn0019650	FBtr0089185	3	1	1	84	4	1026627	1026703	CAAACACAGGTGTCATTTCTG		59	1026748	1026767	TAATTGCTTCCCGTTAGGTC		59	NA	
Drosophila melanogaster	50	CG1909	FBgn0039911	FBtr0089080,FBtr0089079	3	2	2	80	4	606384	606471	CAAGATTATTGTAAGGAGGCC		58	606513	606531	CATGACGCGAATACTTCTC		58	NA	
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131	2	5	5	80	4	370302	370370	GATTCACCGCTTAAAGCAG		59	370240	370259	CTCAGTTGCTAATGCAAGTG		59	NA	
Drosophila melanogaster	50	Syt7	FBgn0039900	FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475	2	5	6	155	4	323148	325656	TAGTTATAGTCTTCGGGCTG		58	323012	323033	CCAATCAAAGGAGTTCTAAGAC		58	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	1	7	7	82	4	208987	209060	CGGATCATAGACTTACGGA		57	208923	208941	GAAGCATGGTTTAGTCAGG		58	NA	
Drosophila melanogaster	50	plexB	FBgn0025740	FBtr0089179	3	1	1	84	4	53992	56512	GCTGTTTGCTAAGGATATTCC		59	53928	53946	GTCGCTTATTTGTGGAAGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG1910	FBgn0022349	FBtr0085839,FBtr0085840,FBtr0085838,FBtr0085841	3	4	4	64	3R	27575212	27575230	AGGAGAAGGTACAGACCTC		59	27575317	27575335	CTTGACCTCTTTCTTGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG1750	FBgn0039836	FBtr0085767,FBtr0085768	1	2	2	125	3R	27079897	27079915	GATCTGCATGCATCTTTGG		59	27079735	27079808	AATCTTGGGAGCATAGCTG		59	NA	
Drosophila melanogaster	50	chp	FBgn0000313	FBtr0085778	2	1	1	81	3R	27032428	27032501	CAATTCGCTGATGAACACG		59	27032365	27032383	GATCCAGTTGTAGCTGAGG		59	NA	
Drosophila melanogaster	50	su(rdgB)69	FBgn0086704	FBtr0085782,FBtr0085781	1	2	2	87	3R	26987045	26989273	CATACTGCTGAGATACGGC		59	26986976	26986994	ATCCTCGATGAGTTTGTCG		59	NA	
Drosophila melanogaster	50	tmod	FBgn0082582	FBtr0085659,FBtr0085661,FBtr0085663,FBtr0085658,FBtr0085662,FBtr0085660	3	6	7	190	3R	26398542	26398560	CACCATCGAGGAGTTTAGG		59	26398787	26402912	GTTTCACACGTATTCTGTCG		59	NA	
Drosophila melanogaster	50	hdc	FBgn0010113	FBtr0085621,FBtr0085619	1	2	3	138	3R	26105941	26105959	GAGGTCGAACTCTATTCCG		59	26134965	26183984	CCTCGTCCTCAATCTTGAC		59	NA	
Drosophila melanogaster	50	RpS7	FBgn0039757	FBtr0089425,FBtr0089422,FBtr0089424	3	3	4	205	3R	26034349	26034367	TCCAAGATTATCAAGCCCG		59	26034098	26034117	ATCTTCTGGAACACCTTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9747	FBgn0039754	FBtr0085573	2	1	1	85	3R	26011994	26012159	TACGATAAGCGGATCATGC		59	26011927	26011946	AATACGTGGTGGTAGTTGTG		59	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	3	8	8	148	3R	24962000	24962021	GCACAATCATACGTATTTCAGG		59	24962129	24962212	AGTAGGGCTTATCATTGGTG		59	NA	
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0091524,FBtr0091526	1	2	9	124	3R	24746881	24746902	CATCTTGTTCGAACTGTATCTG		59	24746987	24747076	AAAGAGTATGATTGCGTGC		58	NA	
Drosophila melanogaster	50	CG33203	FBgn0053203	FBtr0114574,FBtr0085348	2	2	2	88	3R	24700983	24711990	ATACTGACACATGCCATACC		59	24700914	24700932	AAGGACAGGAACTTGTAGC		59	NA	
Drosophila melanogaster	50	CG5514	FBgn0039560	FBtr0085252,FBtr0085253	3	2	2	110	3R	23765359	23765436	TACCTTCGAAGGTACTGAG		57	23765510	23765528	TCTATGTTTGCCTTCACCT		58	NA	
Drosophila melanogaster	50	CG18437	FBgn0039536	FBtr0085214	2	1	1	81	3R	23497485	23497503	AAAGGACATGGACGTAACC		59	23497548	23497623	GACCAAGGATCGATAACCC		59	NA	
Drosophila melanogaster	50	Lerp	FBgn0051072	FBtr0085097,FBtr0085099,FBtr0114572	3	3	3	103	3R	22686815	22686833	CGATTCCTGCACCTATCAG		59	22686665	22686748	AACTCAGATCCAACAGCTC		59	NA	
Drosophila melanogaster	50	CG6447	FBgn0039437	FBtr0085055,FBtr0085056	3	2	2	220	3R	22450655	22450673	AGATCTTGCCCAGAAACTG		59	22450453	22450471	TCTGAGCATTAGCCTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gro	FBgn0001139	FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963	2	5	5	103	3R	21870081	21870172	CGCCATTATGTTATGTACTACG		59	21870236	21870254	AGTAGCTGGTTGATCAGTG		58	NA	
Drosophila melanogaster	50	CG31091	FBgn0051091	FBtr0084941	2	1	1	191	3R	21727246	21727331	AGGAAGAACTAATTCGACCG		59	21727485	21727503	GTGATTAGCTCAGTTGGGT		59	NA	
Drosophila melanogaster	50	Fur1	FBgn0004509	FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986	3	5	6	197	3R	21182169	21182187	GAGACGAGGAGACATTCAG		59	21180028	21181955	GTGATTTGTGCCATATAGCG		59	NA	
Drosophila melanogaster	50	CG10425	FBgn0039304	FBtr0084867	1	1	1	147	3R	21087199	21087281	CTTAAGGATGCCCTGAAGG		59	21087070	21087088	TAACTATTCGCAGTGGTCC		59	NA	
Drosophila melanogaster	50	fd96Ca	FBgn0004897	FBtr0084770	1	1	1	60	3R	20910307	20910325	ATAATGTTACCCTCGTCGC		59	20910349	20910367	ATTCTATTCTGCACCTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6422	FBgn0039261	FBtr0113281,FBtr0084795,FBtr0084794	2	3	3	94	3R	20864033	20864153	TGAAGTCTCTGGCAATGAC		59	20863957	20863978	CCTTGTTCATATTGTTCCATGG		59	NA	
Drosophila melanogaster	50	CG11781	FBgn0039259	FBtr0084797	2	1	1	61	3R	20850318	20850336	TGACCAATCAGTTCATGGG		59	20850275	20850293	GCCATAGAGGAATGTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6643	FBgn0039208	FBtr0084647,FBtr0084648	1	2	2	90	3R	20378367	20378626	TATTGGTGTGAGGCTACTG		58	20378680	20378698	GGTTCTCGTCTTTCTTGGA		59	NA	
Drosophila melanogaster	50	orb	FBgn0004882	FBtr0100228,FBtr0084386,FBtr0084385,FBtr0084384,FBtr0100227	1	5	5	80	3R	19092492	19092510	TGGATGATTCTCACTGTGG		58	19092375	19092450	GAATGACTTCAACATCCTTGG		59	NA	
Drosophila melanogaster	50	CG7029	FBgn0039026	FBtr0084312,FBtr0113270,FBtr0113271,FBtr0113269	1	4	4	92	3R	18614228	18614308	ATAGTTTCTATGCGGATCCC		59	18614363	18614381	TGCGTTTCACTATGTCCTC		59	NA	
Drosophila melanogaster	50	loco	FBgn0020278	FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273	3	4	4	86	3R	18446567	18446652	GCACCAAGATGAACTACTC		57	18446499	18446517	AAGTCGAAGTTGATTTCGG		58	NA	
Drosophila melanogaster	50	pinta	FBgn0038966	FBtr0084297	2	1	1	121	3R	18249662	18249680	CTCATCAAGAGATCCGTGG		59	18249502	18249580	GGCGTCATGAATATTCTAAAGG		59	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067	1	1	22	80	3R	17200833	17200851	CAGTCCCAGAACTACAGTG		59	17181269	17200790	TTCACCTAAATCTTGAGCCT		58	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	2	22	22	85	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202453	17202548	GTTCAGGAATACGATAGCG		57	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	2	22	22	85	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202453	17202548	GTTCAGGAATACGATAGCG		57	NA	
Drosophila melanogaster	50	CG3308	FBgn0038877	FBtr0084102	3	1	1	101	3R	17097942	17097960	CATGTACCCAAACACAAGG		58	17097798	17097879	CGTTGGAAGGTACAATATCTG		58	NA	
Drosophila melanogaster	50	CG5802	FBgn0038863	FBtr0084017,FBtr0113259	2	2	2	76	3R	16965292	16965420	GTATTTACAGGTGAGGCCA		58	16965460	16965478	ATCAGCGATAAATGGGTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	TotB	FBgn0038838	FBtr0083973	2	1	1	60	3R	16700052	16700073	CTTTAAGAAGATTCTGTCTCCG		58	16700093	16700112	GAGTTCGGTAAAGAATCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Stat92E	FBgn0016917	FBtr0089486,FBtr0089485,FBtr0089487	3	3	5	81	3R	16367270	16367415	GAAGACAGGATAATGTCCGA		58	16367208	16367228	GATCTTCGTTGAACTTTAGGG		58	NA	
Drosophila melanogaster	50	CG10889	FBgn0038769	FBtr0083839	1	1	1	60	3R	15860551	15860570	GATCAACTCACTGATTAGCC		58	15860510	15860528	CTGCTCGATGGTATTTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trem	FBgn0038767	FBtr0083840	2	1	1	80	3R	15855662	15855680	AGAACGTTTACCTACTCGG		58	15855541	15855618	ACAAAGATCACAGACATGC		58	NA	
Drosophila melanogaster	50	CG14305	FBgn0038630	FBtr0083634,FBtr0083636,FBtr0083635	1	3	3	60	3R	14424799	14424819	CTTATGCCACTGTTATAACCG		58	14424841	14424859	GCCAAATGTACTCCATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpb4	FBgn0053520	FBtr0100273,FBtr0083604,FBtr0100275,FBtr0083603	2	4	5	99	3R	14080129	14080147	GACAGAGGAATTGCAACTC		58	14079990	14080008	CATTATGAGACCGTGTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7208	FBgn0038575	FBtr0083618,FBtr0083617	2	2	2	282	3R	14010550	14010568	GAAGAGCTCTATGCTTCTG		57	14010222	14010240	AAATATGGAAGCCATGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	PP2AB	FBgn0042693	FBtr0083556,FBtr0083555,FBtr0083553,FBtr0083552,FBtr0083554	2	5	5	132	3R	14001239	14001330	GGCGATCAATATGTTTGCT		58	14001426	14001444	GTAAACGAGTTGCAGATGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG7217	FBgn0038570	FBtr0100619	3	1	2	105	3R	13991872	13992085	ATGGTGAAAGTAGGAGACTC		58	13991786	13991804	AGATGATCACCTTCTTGCC		59	NA	Nonspecific
Drosophila melanogaster	50	Brf	FBgn0038499	FBtr0083452	1	1	1	80	3R	13216263	13216281	TATGAGCTTGGTCGTACCT		59	13202972	13216220	GATGTATAAACACGGGTCCA		59	NA	
Drosophila melanogaster	50	Abd-B	FBgn0000015	FBtr0083382,FBtr0083385,FBtr0083384,FBtr0083381,FBtr0083383	3	5	5	122	3R	12755454	12755472	CGTACTCGAAGTTCCAGAC		59	12755293	12755368	ATATCTTGACCTGTCGCTC		58	NA	
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083348,FBtr0083352,FBtr0083351,FBtr0083350,FBtr0083347,FBtr0083349	3	6	6	66	3R	12558920	12558938	GAGCCTACAAACAGGACTG		59	12558872	12558891	TTCCAAATGTCTTTGTAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cad89D	FBgn0038439	FBtr0083306	1	1	1	80	3R	12316385	12316403	CTCATCACCAATCTCACCA		58	12316239	12316344	GTTGATCTCTTCTATGACAGGT		59	NA	
Drosophila melanogaster	50	CG14876	FBgn0038368	FBtr0083192	3	1	1	264	3R	11659534	11659552	TAGGACTCCAAAGTTTCGG		58	11658994	11659306	TTTAGCTGGAATGGGACAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34274	FBgn0085303	FBtr0112469	2	1	1	84	3R	11558092	11558162	TGCTTTATCAAGTTACGCG		58	11558210	11558228	CACGCAGATAATGTTCGTC		58	NA	
Drosophila melanogaster	50	CG5038	FBgn0038324	FBtr0083089	3	1	1	60	3R	11179037	11179055	AGTTCTCTATCATCGCTGG		58	11179079	11179097	TATTGCAGTCCGATAAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pr-set7	FBgn0011474	FBtr0082929,FBtr0082928,FBtr0082930	1	3	3	97	3R	10142502	10142520	CGTTTGATGAAGGTCACTC		58	10142581	10142670	AAGGGAACTCCTATTGTGC		59	NA	
Drosophila melanogaster	50	CG34383	FBgn0085412	FBtr0112624,FBtr0112623	1	2	4	84	3R	9582377	9582623	AGATCAGGAACTTGGATGTC		59	9582670	9582688	CTCCTCAACTGAATCAGCA		59	NA	
Drosophila melanogaster	50	CG7381	FBgn0038098	FBtr0082727,FBtr0082726,FBtr0082725	2	3	3	81	3R	8795404	8795425	GATGACGAGGATATAAAGACCT		58	8795254	8795362	TGCTGCCATACTTCTTCTC		59	NA	
Drosophila melanogaster	50	CG14394	FBgn0038079	FBtr0113227,FBtr0114499	3	2	6	203	3R	8522009	8522181	CATAGTCATGCAGGTCCTG		59	8522348	8522366	TTTAGAAAGTCGCCCTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6225	FBgn0038072	FBtr0082649,FBtr0113225	3	2	2	82	3R	8484654	8484732	ACTCCTGTGATTAAGTCATACG		59	8484773	8484793	ATGCCCAGACTAATCTTTGAG		59	NA	
Drosophila melanogaster	50	Pp1-87B	FBgn0004103	FBtr0082595	2	1	1	60	3R	8251249	8251267	CATTCTGCTCGAGCTAGAG		59	8251207	8251227	GTAGTACTGTCCATGGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	svp	FBgn0003651	FBtr0082564,FBtr0082563,FBtr0082562	3	3	3	180	3R	8116037	8116055	TTGTCGATTGAAGAAGTGC		58	8119848	8119866	GAGCGAGATGTAGGAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ect3	FBgn0037977	FBtr0082487	2	1	1	87	3R	7827144	7827218	GGTGACAACCTATGTGGAG		59	7827267	7827287	TATAAAGTGTTCCAGATCGGC		59	NA	
Drosophila melanogaster	50	SelR	FBgn0037847	FBtr0082296,FBtr0082294,FBtr0082292,FBtr0082293,FBtr0082295,FBtr0082291	1	6	6	103	3R	6692606	6692624	AAGGTTACGGTGAACAAGG		59	6692406	6692539	TTGTAGCAACCTGTGAAGG		59	NA	
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0100455,FBtr0082254,FBtr0082255,FBtr0100454,FBtr0082253,FBtr0082256	2	6	6	91	3R	6417178	6419287	GAAGTCGACTCACTGATGG		59	6411625	6411645	CAGAAGTTATCGCATAACTCG		58	NA	
Drosophila melanogaster	50	Cyp12e1	FBgn0037817	FBtr0082250	2	1	2	177	3R	6261574	6261593	CTATTTCCACATTGGGAACG		58	6261733	6261851	CTTGTCAGGACTAGGATCC		58	NA	
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082186,FBtr0082187	3	2	8	87	3R	5955360	5960550	AAGCCAGCAAGTAATGGAG		59	5955291	5955310	ATATGATGTCTGCATCCGTG		59	NA	
Drosophila melanogaster	50	CG3934	FBgn0037783	FBtr0082176	1	1	1	96	3R	5886262	5886280	GACATCCAATTTGTTGCCA		58	5886452	5886472	CTTCTAGGTCATAGGGTATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	RpS29	FBgn0037752	FBtr0082137	3	1	2	100	3R	5604291	5604310	AGATTCTTTGATGGAACCGA		59	5604373	5604391	ATGTTAAGGCCATACTTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dh	FBgn0012344	FBtr0112870	1	1	2	234	3R	5466244	5469213	CCGTAATCGCTATACTCCA		58	5469410	5472749	AAAGTCATCCTGTGAGTTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Fps85D	FBgn0000723	FBtr0082051,FBtr0082052	3	2	4	103	3R	5199589	5216617	CCTGAATCATCTCACCGAC		59	5199504	5199524	TTATGTAGTTCTCCTCGAAGC		59	NA	
Drosophila melanogaster	50	Nmdmc	FBgn0010222	FBtr0081996,FBtr0081997	2	2	2	289	3R	4868835	4868854	GAATGTCAGTCTACCGATGG		59	4868498	4868583	GGCGAACTTCTTCAAAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11963	FBgn0037643	FBtr0113206,FBtr0081957	3	2	2	122	3R	4767443	4767462	CATTCTGGTCAACATCTTCG		58	4767547	4767633	ACTTTGGTTCCCTGAAGAC		59	NA	
Drosophila melanogaster	50	CG8379	FBgn0037638	FBtr0081922,FBtr0081921	2	2	2	80	3R	4652246	4652266	CTATGATGAGCTCTACTACGA		57	4652308	4652380	GTTGTATAGCGAAGAACCA		57	NA	
Drosophila melanogaster	50	hb	FBgn0001180	FBtr0081950,FBtr0081951	1	2	2	60	3R	4519197	4519215	ACGATGATACCAACATCCG		59	4519155	4519174	TTGTAGTTCTTCATCTTGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11693	FBgn0037570	FBtr0081860	3	1	1	68	3R	4135442	4135461	ATTAACCACGACGAATTCGA		59	4135393	4135411	TATGTAATCGGAGGAGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7800	FBgn0037552	FBtr0081795	1	1	1	60	3R	4044626	4044647	GATATTCCCAAACTTCTAACGG		58	4044666	4044686	TATTCTCGGATAGATCCAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11035	FBgn0037544	FBtr0081816	2	1	1	60	3R	3858393	3858414	CAATCAGGCTTATGAGATTCTG		58	3858354	3858373	GATTCCCTTGTCGTAAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst84Dc	FBgn0004174	FBtr0081587	2	1	2	82	3R	3190327	3190345	TTTGGCTTCTAAAGACCGT		59	3190206	3190224	CACAGCAGTAATATCCGCA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Antp	FBgn0000095	FBtr0081648,FBtr0081652,FBtr0081651,FBtr0081649,FBtr0081650,FBtr0081647,FBtr0081656,FBtr0081654,FBtr0081653,FBtr0081655	1	10	11	255	3R	2734435	2734453	AGAACCATCACAACATGGG		59	2724212	2724230	AGCTCTAGAGTCTGGTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2051	FBgn0037376	FBtr0078670,FBtr0078669	3	2	3	81	3R	1613834	1613948	GTGTTACTTCTTGAGCTACGA		59	1613773	1613792	GTATACGGTGGTGTAACCAG		59	NA	
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078673,FBtr0078676	1	2	5	85	3R	1587421	1587439	TTCATTAGCTGGAAGAGCG		59	1586951	1587374	GTACATACCCAGTTATGTCCG		59	NA	
Drosophila melanogaster	50	CG31542	FBgn0051542	FBtr0078786	1	1	1	100	3R	1195951	1195969	GAAGAAGTGCGTCATTCAG		58	1196032	1196051	TGTGAGCGTTATAATCTGTG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9776	FBgn0027866	FBtr0078956,FBtr0078955	3	2	2	112	3R	155853	155871	AAGTCCAAGAAAGACGAGG		59	155694	155715	GCATCTATTGTACTACGTTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9779	FBgn0037231	FBtr0078958	2	1	1	151	3R	136072	136145	AATCAGCTATCCACCTTGC		59	135939	135957	ATCTCCTCAATAATGCCGG		59	NA	
Drosophila melanogaster	50	nAcRalpha-80B	FBgn0037212	FBtr0113189	2	1	2	80	3L	23232107	23255816	ATGGGTTTAAGGTTGATCTG		57	23255859	23255877	ATTCAGATAGGTCCACACC		58	NA	
Drosophila melanogaster	50	CG7632	FBgn0037071	FBtr0078339	1	1	1	60	3L	21298964	21298982	TCTGTTCGAATACCACGAG		59	21299006	21299024	CTTCTCTGGCTCGTTAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ppl	FBgn0027945	FBtr0078412	1	1	1	83	3L	21273951	21273969	AGCAGTTGCTATGAGAAGG		59	21273825	21273843	CTGATCCTCGGTCATAAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	siz	FBgn0026179	FBtr0111038,FBtr0078289,FBtr0078290	3	3	3	119	3L	21066241	21066320	TCATCCGATACGATCTTCG		58	21066401	21066421	GCGCAGATTCTTGATAAAGTC		59	NA	
Drosophila melanogaster	50	CG5059	FBgn0037007	FBtr0078218,FBtr0078216,FBtr0078217,FBtr0078219	2	4	4	117	3L	20508983	20509001	ATGATGAGCTCAGAAACGT		58	20508709	20508828	TCAATGTTCCAGCTACTGG		59	NA	
Drosophila melanogaster	50	CG14088	FBgn0036858	FBtr0075016	1	1	1	60	3L	19263420	19263438	CTGCATTCTTCAGTAACGC		59	19263378	19263396	ATTAGGCCCATGTTATTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11619	FBgn0036836	FBtr0075046	1	1	1	60	3L	18979532	18979553	GGGATGAGTATATGGATCTGAG		59	18979493	18979511	GACTGAACGAAGTTGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7341	FBgn0036777	FBtr0075124,FBtr0075123	2	2	2	60	3L	18113820	18113839	TTCCTAAAGATCTTCAAGGC		57	18113862	18113880	TAATCCTTGAGACCACTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13728	FBgn0036716	FBtr0075238	2	1	1	60	3L	17373521	17373539	GGAAATCGATCCAGTACCA		58	17373479	17373499	GATGCTCAAAGTCAATAAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9674	FBgn0036663	FBtr0075341,FBtr0075344	1	2	4	87	3L	16785600	16785618	TAAGAATGCCGGATTACCC		59	16784781	16785549	AACAATCACACGTGATCGT		59	NA	
Drosophila melanogaster	50	CG4753	FBgn0036622	FBtr0075422,FBtr0075421	3	2	2	89	3L	16372431	16372449	CATTCTGCACTACTTGGTC		58	16372300	16372378	AGGCTATAGAATCCTCCCA		58	NA	
Drosophila melanogaster	50	CG5018	FBgn0036578	FBtr0075484	3	1	1	187	3L	16219811	16219829	TGTATGTGTTGGAGAGGGA		59	16219414	16219432	GTTGACAAGTTCGTTAGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	brm	FBgn0000212	FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523	2	4	4	160	3L	15964327	15964406	GATACCATTCTAGGTCGAGG		58	15964186	15964204	CGATTCTTACGCTTTCGTC		58	NA	
Drosophila melanogaster	50	comm	FBgn0010105	FBtr0075579	2	1	1	60	3L	15715867	15715887	GGTGGATAATTCAGATTCCGA		59	15715827	15715846	TAAACTTTGTGCTACTGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6854	FBgn0036478	FBtr0075635	3	1	3	123	3L	15101947	15101967	TTTATTCACGACATCGAGGAG		59	15102052	15102449	TGAGAACGATCTTTGGCAG		59	NA	
Drosophila melanogaster	50	CG13476	FBgn0036441	FBtr0075687,FBtr0075686	1	2	2	70	3L	14698767	14698788	CAGAAAGCTCTAGTTGATATCG		58	14698819	14698837	GCATTATGGATTGTGTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8100	FBgn0036410	FBtr0075779	3	1	1	60	3L	14077499	14077517	CCTATTCCAACCGATCCTC		59	14077541	14077559	CTAGGCTCAGATAAGCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32138	FBgn0052138	FBtr0075776,FBtr0075775,FBtr0114573	1	3	3	80	3L	14054599	14058180	GATATGCGATCAAGAAATGGTG		59	14058221	14058239	TTTGGGTCCAGATATGTGC		59	NA	
Drosophila melanogaster	50	CG14120	FBgn0036321	FBtr0075868	3	1	1	60	3L	12879263	12879281	AGGACTACATACTGTGCCA		59	12879304	12879323	TCTTTGTACCAAGTTAGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11009	FBgn0036318	FBtr0075934	3	1	1	215	3L	12843890	12844026	GCAATTGAATATGGTCAAGC		57	12844204	12844222	CATATAGACCGTATTCGGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG17667	FBgn0036312	FBtr0075926,FBtr0075925	2	2	2	113	3L	12787406	12787490	AGACAAGGATGTCTTTCAGG		59	12787566	12787584	AGTAGCGTTAGTTCCTTGG		58	NA	
Drosophila melanogaster	50	CG32112	FBgn0052112	FBtr0075917,FBtr0075915,FBtr0075916	1	3	3	80	3L	12737069	12737147	TTTACAACTGGTGTCATGAG		57	12737190	12737208	TTCTCTGTACTGTCCATCC		57	NA	
Drosophila melanogaster	50	CG6404	FBgn0027615	FBtr0076271,FBtr0076272	3	2	2	138	3L	10877848	10877866	CTAAGAAGGGATTCGTCGG		59	10877654	10877673	AACTTGTACGTCTTGACCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32046	FBgn0052046	FBtr0076409	2	1	2	182	3L	9728380	9730036	TTTGTCCAGAAGTAAGCCC		59	9728216	9728234	GTGGAAATAATGGTGTGCC		59	NA	
Drosophila melanogaster	50	CG16717	FBgn0036028	FBtr0076392	1	1	1	60	3L	9673760	9673778	TGTCTTCGGACATGTACAC		59	9673802	9673820	CACAAAGATGATCCTGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4452	FBgn0035981	FBtr0089493,FBtr0089494	1	2	3	71	3L	9361078	9361096	ATGTACTTACTGCCGTTCG		59	9361218	9361236	TAATGTTCGCACTTCTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32040	FBgn0052040	FBtr0076440	1	1	1	60	3L	9348254	9348273	AATCGTTAAAGAAACGCCTG		59	9348293	9348314	AAGTAGCTATCGTTATCATCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6673	FBgn0035906	FBtr0076653	2	1	2	60	3L	8515816	8515834	TGCTGACTACATGATTTGG		57	8515774	8515792	ATCCAGAGTGTACTTGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12027	FBgn0035585	FBtr0073372	3	1	1	69	3L	5011904	5011922	GCTGAAGGAAGTCACTGAG		59	5011853	5011871	AAACTCGAGCATATCCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32235	FBgn0047330	FBtr0073355	1	1	1	216	3L	4860053	4860071	AAAGCAGGATTCAGGTTCC		59	4859855	4859875	CTAATGCCAAGATCAATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11349	FBgn0035550	FBtr0073305	3	1	1	60	3L	4474283	4474302	AGCATTTGATCCTTCTACAG		57	4474325	4474343	TCTTTGGTTAGAAACACCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nAcRbeta-64B	FBgn0000038	FBtr0073300	3	1	2	69	3L	4429770	4429790	GCCGTTATGTAATCGTAAAGG		59	4429820	4429839	ACGGTTAGCAGAGTTAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cip4	FBgn0035533	FBtr0073339,FBtr0113138	1	2	2	80	3L	4327037	4327055	ATTAGAGGCACGATGAGTG		59	4325402	4326994	CAGGGAATTCTTATTGCTGC		59	NA	
Drosophila melanogaster	50	CG1309	FBgn0035519	FBtr0073229	1	1	1	80	3L	4260253	4260378	ACTTATGAGACCCATGCTG		59	4260421	4260440	ATGGTCTTAACCTTGTAGCG		59	NA	
Drosophila melanogaster	50	ago	FBgn0041171	FBtr0073246,FBtr0073247,FBtr0073245	2	3	3	100	3L	4247723	4247742	AAATTGTGGGACGTTAAGAC		58	4247576	4247660	GTGTCGTTTGCTCTAATCC		58	NA	
Drosophila melanogaster	50	CG32252	FBgn0052252	FBtr0073251	2	1	1	73	3L	4222186	4222204	GAATGCAATGTGACCTGTG		59	4222131	4222150	GCTTCACATGATTGAACCAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Gad1	FBgn0004516	FBtr0073276,FBtr0073277,FBtr0073275	1	3	3	80	3L	4082635	4084743	ACTGACGGCATATGATCTC		58	4082573	4082591	ACATCGATTACCTTCAGCA		58	NA	
Drosophila melanogaster	50	CG10853	FBgn0035478	FBtr0073164	3	1	1	64	3L	3947970	3947988	CTAATATCCCTGGCCTTGG		59	3948073	3948091	ACCTTCTTTATCGGAGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14974	FBgn0040694	FBtr0073140	3	1	1	101	3L	3620873	3620892	GTTACAGAAGTCCAAAGGAG		57	3620682	3620751	CTATGGAGCAATTATCTGCC		58	NA	
Drosophila melanogaster	50	CG14961	FBgn0035439	FBtr0073069	2	1	1	61	3L	3330612	3330630	GTACATCCAGTCCTACCAC		58	3330711	3330729	GATTCGATGACTCGTAGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14968	FBgn0035431	FBtr0073088	3	1	5	188	3L	3300880	3301006	GATTACGGTAGAGATATGTTGG		57	3300038	3300731	TGTACTTCACCTTGAACGT		58	NA	InUTR
Drosophila melanogaster	50	CG14965	FBgn0035414	FBtr0073109	3	1	1	60	3L	3192015	3192034	GGTGAGACACAGAATTTGGA		59	3191974	3191994	CCTCTTCTGTCAACTCTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996	2	6	15	81	3L	3083796	3085208	TCGCCACTTATATGGTCAC		59	3085252	3085271	TATGGTGCATAGAAGTTGGG		59	NA	
Drosophila melanogaster	50	CG33232	FBgn0035347	FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920	1	4	4	80	3L	2495895	2495913	GAGTACACCGAAATGAGGT		58	2495954	2496034	GTTGGCATTATGACCATATGAC		59	NA	
Drosophila melanogaster	50	sls	FBgn0086906	FBtr0072849	2	1	2	81	3L	2046155	2046290	TATTTGAACGTCCTGGACC		59	2046092	2046110	CCGTCAGGAGTATGAATCG		59	NA	
Drosophila melanogaster	50	CG13931	FBgn0035258	FBtr0072802	1	1	1	78	3L	1701475	1701493	TTCAATCACTACTCGCGTC		59	1701415	1701433	GGTCTACAAAGTCGTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aplip1	FBgn0040281	FBtr0072627	3	1	2	252	3L	1197306	1197520	CAAGAAATCTTCCATTCTGC		57	1197735	1197753	CGACATGCTCTTAAAGTCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	trio	FBgn0024277	FBtr0072648,FBtr0072646,FBtr0072645,FBtr0072649,FBtr0072644,FBtr0072647	1	6	6	80	3L	998874	998892	GAATACATAGTCAGTGCCC		57	998720	998831	CAAGTTACTCAGATCCAGAC		57	NA	
Drosophila melanogaster	50	Glut1	FBgn0025593	FBtr0072615	2	1	6	134	3L	972277	972295	ACCTTTCGATGATCTCACC		59	972393	973831	AATTGGACACTGGAAACAC		58	NA	
Drosophila melanogaster	50	CG34267	FBgn0085296	FBtr0112462	2	1	1	120	3L	500404	500425	CAAGTGACAATATCTCCAAGTC		58	500242	500260	CTCAATGTAACCAGGAGCA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CR33471	FBgn0053471	FBtr0088081	1	1	1	60	2R	7587372	7587393	CTAAGCTATAGATACTTGGCAG		57	7587333	7587351	AAGTGCCTAATGCAATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33383	FBgn0053383	FBtr0086375	1	1	1	62	2R	15642634	15642652	AATACATCGGTTCTCGTCC		59	15642590	15642608	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Uhg1	FBgn0045800	FBtr0086842	2	1	1	116	2R	13586940	13587368	GTGTCTCAAAGTAAGATGGTC		58	13587628	13587647	GACATTACAGATCCCTAGGA		57	NA	
Drosophila melanogaster	50	CG30423	FBgn0050423	FBtr0089764	1	1	1	105	2R	20762917	20762935	TTTGCTCACTTCCTTACCG		59	20762765	20762783	TTATCGTCAGGATACTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3640	FBgn0035042	FBtr0072322	1	1	1	60	2R	20527248	20527266	CCTGGTGATAGTTACCCTC		58	20527290	20527308	GTGCTCTTGGCAATAATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mAcR-60C	FBgn0000037	FBtr0072367	1	1	2	206	2R	20271001	20271019	CTACATGACCAACATGGTC		57	20269371	20270773	GAGGTGCATCCTAAATCAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	enok	FBgn0034975	FBtr0072250	1	1	1	66	2R	19993168	19993186	AAGTAATCCACAGCACCAG		59	19993280	19993298	TGAGCTAACTGCAATGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10339	FBgn0034972	FBtr0072288	3	1	1	63	2R	19967146	19967164	TTGGTCTTCAAGCAGAAGG		59	19967101	19967119	AGAACCCGAAGATGTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dcp1	FBgn0034921	FBtr0072223	2	1	1	65	2R	19776668	19776686	AACGATAAGGAGTTTGCCA		59	19776621	19776639	CAGCAGTAGATTGGAACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9850	FBgn0034903	FBtr0100329	3	1	2	134	2R	19648482	19648500	TATCTGGAACGCAATCGAG		59	19647295	19648386	CATATCGAGTTTGGTTATGGC		59	NA	
Drosophila melanogaster	50	CG5431	FBgn0034888	FBtr0072080,FBtr0114542	1	2	2	97	2R	19571830	19571901	AAAGAAATGCACCCATTCG		59	19571962	19571980	TCTTGTATCCGGACATTGG		59	NA	
Drosophila melanogaster	50	CG5428	FBgn0034887	FBtr0114541	2	1	1	279	2R	19569944	19569962	CTTCTTCACCAGCTACGAG		59	19570265	19570283	GAATTCCCGTATGATGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3530	FBgn0028497	FBtr0072028,FBtr0112940,FBtr0072029	1	3	3	84	2R	19279314	19279332	CTTTCGTCATTCCCAAGGA		59	19279181	19279266	AATTTGTTGATGGACACCG		58	NA	
Drosophila melanogaster	50	yellow-d2	FBgn0034856	FBtr0072012	3	1	1	61	2R	19269579	19269597	GGTGTCTACCACTCTAACG		59	19269620	19269640	GAGAGTGGAAATACATCATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ugt58Fa	FBgn0040091	FBtr0071934	2	1	1	89	2R	18530878	18530896	GATAACGTTACCGAAACGG		58	18530751	18530769	AAGATCAGCAAGGTTTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	GM130	FBgn0034697	FBtr0071789,FBtr0071790	3	2	2	131	2R	18013744	18013763	TTAAAGAGGCCAGTCAAGTG		59	18013577	18013595	TCTTCAGCTGGAATTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Grx-1	FBgn0034658	FBtr0071714	2	1	1	68	2R	17645091	17645110	CAAGGTGGTGATCTTTAGCA		59	17645141	17645159	ATCTTTCGGAACTGTTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17922	FBgn0034656	FBtr0071675	1	1	1	97	2R	17581991	17582009	AACATCGGGTTATGTACCT		57	17581856	17581930	CAGATCCAGCTTAAACTGC		58	NA	
Drosophila melanogaster	50	CG18870	FBgn0042180	FBtr0071688	2	1	1	124	2R	17503365	17503384	TATTGGAACTGCATAACGGT		59	17503193	17503211	CTATCATCGTAGTGCACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30222	FBgn0050222	FBtr0071655,FBtr0071656	1	2	2	104	2R	17470719	17470737	CTTAGACGCTTTGATGAGC		58	17471237	17471312	ATCGAAGTCAGTGATTCGG		59	NA	
Drosophila melanogaster	50	Sara	FBgn0026369	FBtr0071641,FBtr0071642	1	2	2	80	2R	17372489	17372573	GGTCAAGATTGTTAACATGAGC		59	17372613	17372632	CTGCCCATATGATGTAGTCC		59	NA	
Drosophila melanogaster	50	CG15661	FBgn0034605	FBtr0110814,FBtr0071624	3	2	2	98	2R	17103547	17103565	GTATTCATTACCCACGGTG		57	17103405	17103485	ATTAAGGTGCTGATCACAG		57	NA	
Drosophila melanogaster	50	Glycogenin	FBgn0034603	FBtr0089601	2	1	2	141	2R	17092794	17092873	GCCTTCAAACAGTTCAGAG		58	17092978	17092996	ACAGCTGAATCAAATCCTG		57	NA	
Drosophila melanogaster	50	king-tubby	FBgn0015721	FBtr0089600,FBtr0089599	2	2	2	122	2R	17009300	17009318	GACCAGATACTCACCAACG		59	17009403	17009519	CTCTATGAGATCAGCCTCCT		59	NA	
Drosophila melanogaster	50	Treh	FBgn0003748	FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536	3	6	6	81	2R	16972827	16972845	TTTAATGCCATGATGGAGG		57	16972889	16972968	GTGCACTGAAGTACTTATCG		58	NA	
Drosophila melanogaster	50	Treh	FBgn0003748	FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536	2	6	6	81	2R	16972825	16972844	ACTTTAATGCCATGATGGAG		57	16972887	16972966	GCACTGAAGTACTTATCGAC		58	NA	
Drosophila melanogaster	50	CG3216	FBgn0034568	FBtr0071552	1	1	2	80	2R	16876691	16876710	TTACTCCATTCTCGATCTGG		58	16876252	16876648	TTCATCTGCTTGTGAACAC		58	NA	
Drosophila melanogaster	50	CG34115	FBgn0083951	FBtr0110813	1	1	1	97	2R	16864109	16864127	TTTATTGTGGCCTTTGTGG		58	16864246	16864264	TAGGGATAACGGTACTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Gr57a	FBgn0041240	FBtr0086241	3	1	1	60	2R	16574051	16574070	ATCTATCAAAGATTGGCTGC		58	16574010	16574028	TCAGATTAGCTCCGAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16799	FBgn0034538	FBtr0086249	1	1	1	98	2R	16541191	16541263	CTTCATTTCCAACTGGATCTG		58	16541113	16541131	AAGAGGCCATAGTTCTTGC		59	NA	
Drosophila melanogaster	50	CG8929	FBgn0034504	FBtr0086283,FBtr0086285,FBtr0086284	3	3	3	81	2R	16217662	16217743	ACCTGAAGGACTATATCAAGTG		59	16217783	16217803	CAGTACTCATAGTAGCGTTCC		59	NA	
Drosophila melanogaster	50	CG11055	FBgn0034491	FBtr0086271,FBtr0086270,FBtr0086272	2	3	3	142	2R	16148061	16148141	ACTTACACTTAACATGGACC		57	16148245	16148324	CTTCGTTGGATAACATTGTG		57	NA	
Drosophila melanogaster	50	Obp56g	FBgn0034474	FBtr0086343,FBtr0086342	2	2	2	84	2R	15671154	15671174	CGAACTTTAAGGATGTCATCG		59	15671090	15671108	ATCTTGAAGGCAGTGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494	2	7	7	151	2R	15418201	15419688	TATTGAGGGTAAAGGCACC		58	15418068	15418088	CTCAATTGTAGATGTCCACCT		59	NA	
Drosophila melanogaster	50	CG15086	FBgn0034374	FBtr0086651,FBtr0086649,FBtr0086650,FBtr0086648	3	4	4	60	2R	14567640	14567659	CAGGATCCTTACTACCAACG		59	14567543	14567563	ATGATCCGTAGTTCTGATACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	IM23	FBgn0034328	FBtr0086729	2	1	1	60	2R	14270365	14270383	TATCCGGATGGTTACAGTG		58	14270323	14270342	CGCAATCCTTATTGTGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5726	FBgn0034313	FBtr0086772	1	1	1	83	2R	14065119	14065140	CCTTTGAAGTCACATCAATCAC		59	14064542	14064560	CATGGATGGATACTGGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	lolal	FBgn0022238	FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778	3	4	4	123	2R	14042986	14043404	TCACAGATGTAACACTCGC		59	14042819	14042838	ATAATGATCGGATGCTTCGA		59	NA	
Drosophila melanogaster	50	CG4996	FBgn0034271	FBtr0086864	3	1	1	90	2R	13627850	13627928	GTACGAACTCAAGAAAGTTCTC		59	13627979	13627997	AAGAACCTTCTGCTGAGTG		59	NA	
Drosophila melanogaster	50	CG14479	FBgn0034228	FBtr0086952	3	1	1	68	2R	13390037	13390055	GTTCCAGTTTCCTCTTCCA		59	13389987	13390005	ATCAGTGTCTGTTTAGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4750	FBgn0034134	FBtr0087092,FBtr0113086	1	2	2	60	2R	12424201	12424219	CTACCTACTCAAGGACTCG		58	12424240	12424261	GTACATGAACTGGATAACAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ave	FBgn0050476	FBtr0087439	2	1	1	68	2R	10640163	10640181	GTACCTGTGGACAGTTAGC		59	10640212	10640231	TCATACTGGGTGTATTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SelD	FBgn0020615	FBtr0087564,FBtr0087565	3	2	2	60	2R	10157196	10157216	GTACCAAGATGACAGAGAAGG		59	10157156	10157175	TTAAAGCCTCGCATTATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cp1	FBgn0013770	FBtr0087592,FBtr0087591,FBtr0087593	3	3	3	299	2R	9854396	9854414	ATAAGTACGCCGATTTGCT		59	9854737	9854755	AATCGACCAGATTCTGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	cnn	FBgn0013765	FBtr0100656,FBtr0087704	1	2	5	82	2R	9334646	9334665	TCTCTGAATTCCAACAACTC		57	9332634	9333061	AAACTGGCATATGAGTTCTC		57	NA	
Drosophila melanogaster	50	CG17041	FBgn0033822	FBtr0087749,FBtr0113080,FBtr0087750	1	3	4	157	2R	9150200	9150218	TACTCGAGATCAACGAGGA		59	9150450	9150468	CACAATCGACTTCTCCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Aats-val	FBgn0027079	FBtr0087734,FBtr0087735	2	2	2	81	2R	9089460	9089478	ATCACGGAGGAACTTTACC		58	9089523	9089605	ATGTATTGCTGGGATAGCT		58	NA	
Drosophila melanogaster	50	CG3884	FBgn0033786	FBtr0087800	2	1	2	60	2R	8837253	8837273	ATGAGGGTCATCTGATTATCG		59	8837213	8837231	AAAGCGATGAACAAAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nemy	FBgn0033765	FBtr0087878,FBtr0087875	3	2	6	89	2R	8561427	8563641	TAATGCCAAGCTCAGTCAG		59	8560797	8560816	ATGTCGAATAGCACATCCTC		59	NA	
Drosophila melanogaster	50	Iswi	FBgn0011604	FBtr0087842,FBtr0087841,FBtr0087843	2	3	3	93	2R	8527411	8527429	TAGAGGATCGCTTTCTGGT		59	8527486	8527565	GGAGAAGCTCTTATAGCCG		59	NA	
Drosophila melanogaster	50	CG30054	FBgn0050054	FBtr0114522	1	1	1	162	2R	8511986	8512076	CTATGTACTTAGCATGGTGGA		59	8512261	8512279	CTTTGATTCCTCCAGTCGA		58	NA	
Drosophila melanogaster	50	Sin3A	FBgn0022764	FBtr0087887,FBtr0087889,FBtr0087890,FBtr0087888	3	4	4	92	2R	8467292	8467310	CAACATGGACTCGAATACG		58	8467116	8467237	TTGGAGACAACCTTATCCAG		59	NA	
Drosophila melanogaster	50	achi	FBgn0033749	FBtr0087943	2	1	2	140	2R	8400285	8400879	CAGTGTCATCTACAGGTCC		59	8400104	8400125	ACTTCCTCAGTACCAAATACAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG13154	FBgn0033736	FBtr0087953	1	1	1	60	2R	8314906	8314924	ACCTCTATACGACTTCGTG		58	8314864	8314882	AATCTTCTCCAGCATTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8841	FBgn0033713	FBtr0087964,FBtr0087965	1	2	3	84	2R	8212163	8212181	ATACTGTTGCTCCTATCGG		58	8212027	8212045	CAGGTATATCCATGGGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30034	FBgn0050034	FBtr0088097	1	1	1	195	2R	7405813	7405831	GCTGAAAGCTCAATAAGGA		57	7404232	7404250	TAATGATCTTGGTCAGGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30031	FBgn0050031	FBtr0088123	1	1	1	62	2R	7238631	7238649	CTCCTTCAAGAACCACGAG		59	7238675	7238693	TTGATGATGGCAATGTCGT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp46a	FBgn0033508	FBtr0088359	2	1	1	63	2R	6199173	6199192	CATACGAGACGGATGAAGAG		59	6199078	6199096	CTGTTGAAACTGCACTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12923	FBgn0033461	FBtr0088379	2	1	1	60	2R	5775760	5775778	CTGATAATCAGGTGTTGGG		57	5775801	5775820	CGCTGGGATATCAATAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34033	FBgn0054033	FBtr0100088	3	1	1	61	2R	5708244	5708262	CTTCTTGGTTTAGTGCCCT		59	5708287	5708305	GTTTAGATCAGCCAAGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8262	FBgn0027513	FBtr0088685	3	1	1	61	2R	4786772	4786791	GATTACATAGCAGAGGAGGA		57	4786730	4786748	AACTGAGGAATCACTCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8586	FBgn0033320	FBtr0088725	1	1	1	128	2R	4582345	4582363	AATCAGCCTGATCAATCCG		59	4582169	4582187	TACTTAAAGTTCGCCTGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	2	9	9	94	2R	4568146	4568164	AGATCAAGACCTGCTTGTG		59	4568222	4568303	GGTCATATCACGGTAGTCC		58	NA	
Drosophila melanogaster	50	CG14755	FBgn0033282	FBtr0088738	3	1	1	81	2R	4235817	4235835	GCTGAATCTGTGCATTACC		58	4235880	4235898	TTAGCCATGAGCTGATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1399	FBgn0033212	FBtr0088940,FBtr0088939	1	2	2	121	2R	3565903	3566088	TCTAAACAGAATGGAACTCCC		59	3565802	3565822	AGCTGACTGATACACTATTGG		59	NA	
Drosophila melanogaster	50	CG30492	FBgn0050492	FBtr0088917,FBtr0088913,FBtr0113382,FBtr0088916,FBtr0088914,FBtr0088915	3	6	6	95	2R	3526397	3527215	CGGTGCTAAATAAGATTGTGG		59	3527271	3527290	TGAAATTCTCGTCAATGTGG		58	NA	
Drosophila melanogaster	50	so	FBgn0003460	FBtr0088970	3	1	1	94	2R	3312435	3312454	ACAATACAAGGAGCTGTACC		59	3312511	3312666	CATAATGCGCTTTCAACCA		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111102,FBtr0111095	1	2	60	97	2R	3236476	3243204	GTGCCCTTCTATAGATGGT		58	3236397	3236415	ATGAGAGTACCAGAGACCT		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111067	1	1	60	153	2R	3249225	3249243	AAGGACGATTGGTCATCAC		59	3236472	3240414	TTGTACCATCTGCTAATGGG		59	NA	
Drosophila melanogaster	50	Spn43Ab	FBgn0024293	FBtr0100356,FBtr0089054	3	2	2	88	2R	3039482	3039502	CATTTCATTAACGCAGTGGAG		59	3039348	3039434	CCTTTAAGCAATCCAGTTTCC		59	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086204,FBtr0086203	2	2	11	99	2R	2764760	2764778	CAAGGCCTTCATTGAAGTC		58	2763577	2763595	AATGAAGTGTTTGCGACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ogt	FBgn0040295	FBtr0086085,FBtr0086084,FBtr0086086	3	3	3	80	2R	1208104	1213313	GCACGAATATTTGATAGAGCTG		59	1213354	1213372	ATTGCCATGAACTACAGCA		59	NA	
Drosophila melanogaster	50	CG17478	FBgn0032998	FBtr0111270	2	1	1	114	2R	509136	509154	AATTTCAACGGAGAAGGTG		57	509040	509061	CGTTGATATCGCATTACAACTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	RpL5	FBgn0064225	FBtr0111129,FBtr0111128,FBtr0111131,FBtr0111130,FBtr0111132	2	5	5	100	2L	22428912	22428930	GTACAGATCGCCTATGCTC		59	22428770	22428849	TAGTTGGTCAATCCAACCTG		59	NA	
Drosophila melanogaster	50	CG31601	FBgn0051601	FBtr0085947	1	1	1	60	2L	22041404	22041422	AATTTGCGATCTACTCAGG		57	22041362	22041381	GATCTCGTTTCTCTAAGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9266	FBgn0032909	FBtr0081434	1	1	1	76	2L	20966705	20966723	TAGCAAATACCCAAGTGGC		59	20966647	20966665	TAGGATTAGGTGGGTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081442,FBtr0081441,FBtr0081444,FBtr0081447	1	4	8	100	2L	20876928	20876946	TCCAAATGATGTCCCACAC		59	20874424	20875092	CGTGAACAGAAATTGTCTATCC		59	NA	
Drosophila melanogaster	50	spi	FBgn0005672	FBtr0081271,FBtr0081269,FBtr0081268,FBtr0081270,FBtr0100597,FBtr0081272,FBtr0081267	2	7	7	63	2L	19568717	19568735	CCTGGTACTGTTTGAACGA		59	19568672	19568690	CTGTAAACCGGTAGATCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS26	FBgn0004413	FBtr0081090,FBtr0081089,FBtr0081091	1	3	3	294	2L	18442938	18442956	TCAAGAAGTTCGTCATCCG		59	18442662	18442680	TATGGAGATGTCAGGTGGT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG3975	FBgn0027559	FBtr0080713	1	1	1	60	2L	15255578	15255596	CAAAGGATGTCAAAGCCAC		59	15255536	15255554	TTAAAGAAGTTGTCCACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	osp	FBgn0003016	FBtr0089865,FBtr0089866,FBtr0114465	2	3	3	107	2L	14605240	14610697	GATCACAAATCGGGTTTCC		58	14605151	14605170	TGACTCAGATTCGTTATGGT		58	NA	
Drosophila melanogaster	50	DnaJ-H	FBgn0032474	FBtr0080494,FBtr0080493	2	2	2	82	2L	13164329	13164348	TTTACCTTCATGGGTCTCAG		59	13164154	13164172	TTCTTGTCGTCCCTTATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15483	FBgn0032457	FBtr0080402	1	1	1	60	2L	12761583	12761601	CGATATTCCGTGCTATTCG		58	12761541	12761560	ATCCAGATACGTATAGTCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17211	FBgn0032414	FBtr0080336	3	1	1	109	2L	12125890	12125969	ACTGCTATTGCATAGGTGG		59	12126041	12126060	GTATCTTACGGGACAACAGG		59	NA	
Drosophila melanogaster	50	crol	FBgn0020309	FBtr0080260,FBtr0080263,FBtr0080261	3	3	4	152	2L	11797737	11797843	TGAAACCGATCATAATTCCC		57	11797604	11797622	CCGCATTATGTGAGATGAG		58	NA	
Drosophila melanogaster	50	CG12602	FBgn0032373	FBtr0080255	3	1	1	141	2L	11743878	11743898	AAGTACGACAGCTATATTGGC		59	11744001	11744081	TCATGAACTCAACCCAGTG		59	NA	
Drosophila melanogaster	50	Samuel	FBgn0032330	FBtr0080161	1	1	1	80	2L	11014645	11029006	GAATACGTTCAGTCGTTTCG		59	11014584	11014602	CGAGTTAACCAGGTGATCC		59	NA	
Drosophila melanogaster	50	Porin2	FBgn0069354	FBtr0080184	3	1	1	221	2L	10846406	10846424	ATACTCAACTGTTCGCTGG		59	10846140	10846158	CTTGGTTACCTCGATACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Lip1	FBgn0023496	FBtr0080124	1	1	1	141	2L	10700216	10700303	ACTTTAATAGCCTGGTAGGC		59	10700094	10700112	TTAAACTCGTTCCAGTTGC		58	NA	
Drosophila melanogaster	50	CG5694	FBgn0032197	FBtr0079954,FBtr0079953	1	2	2	80	2L	10229119	10229196	GAAGCTATACTCGAACACGA		59	10229058	10229076	TTTGTTATCTGGCTCAGGG		59	NA	
Drosophila melanogaster	50	CG31874	FBgn0051874	FBtr0079964	2	1	1	60	2L	10190451	10190469	GTGAACTCAACACGATTGC		59	10190409	10190430	CCAAGGAATCGTATATCATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13124	FBgn0032156	FBtr0079902,FBtr0079903	2	2	2	89	2L	9903932	9904013	ACTTTCAGAGATTGAGTGCT		58	9903862	9903881	ATGAGTAACTCCAGTTGCTG		59	NA	
Drosophila melanogaster	50	Taf11	FBgn0011291	FBtr0079924	3	1	1	69	2L	9763152	9763170	ACGAAATCCTCTTTCCCAC		59	9763101	9763119	AATTTCAGGTCGACATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trx-2	FBgn0040070	FBtr0079839	2	1	2	102	2L	9613530	9615310	TGAAAGATAAGGCCGATCTC		59	9615375	9615393	GAGATCATCTTGCAGGGTC		59	NA	
Drosophila melanogaster	50	jp	FBgn0032129	FBtr0113030,FBtr0079861,FBtr0079860	1	3	3	85	2L	9549654	9550211	AGGTTAAGGACTGGTTTGTG		59	9549588	9549608	CATGTAGACAAATAGAAGCGC		59	NA	
Drosophila melanogaster	50	CG31886	FBgn0032079	FBtr0113029,FBtr0079787	1	2	2	60	2L	8954834	8954854	CGGAACACATATTGAATCACC		59	8954794	8954813	CTATTGTGATGATGTGCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	raw	FBgn0003209	FBtr0079746,FBtr0079745	2	2	2	82	2L	8712592	8712682	TACAATCCTCAAGTATCCGA		57	8712529	8712547	AAGAATAATACACGGGCCT		58	NA	
Drosophila melanogaster	50	CG9296	FBgn0032059	FBtr0079750	3	1	1	60	2L	8685727	8685746	TATATGATTCTGCGGGATGC		59	8685686	8685704	AGAAGTCCTTGTTCTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14275	FBgn0032022	FBtr0079602,FBtr0079603	1	2	2	78	2L	8329717	8329735	CCTACGTCTATGCCATGTG		59	8332320	8332338	GAATTACACTGATGGCACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Btk29A	FBgn0003502	FBtr0079616,FBtr0079618,FBtr0112836,FBtr0079615,FBtr0079617,FBtr0112835	3	6	6	117	2L	8262033	8262051	ATGACTCACAAGAGCACTG		59	8261860	8261953	ACATACCATTCATAGCGCTC		59	NA	
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567	1	8	9	163	2L	8089727	8105702	CAATCACTTGATAAGCTGGTG		59	8106857	8106875	GAAGGTACATCCGTCACAG		59	NA	
Drosophila melanogaster	50	CG7231	FBgn0031968	FBtr0079529,FBtr0079530	2	2	3	129	2L	7986072	7986144	GAACGTAAGTTTGCCTACC		58	7986237	7986255	CTGTTTGTAGCGCATACAG		58	NA	
Drosophila melanogaster	50	Wnt6	FBgn0031902	FBtr0079434	3	1	1	252	2L	7343047	7351187	AATCTTAATGCGCGATTCC		58	7351403	7351421	CTGACTGGGATGTTGATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	wg	FBgn0004009	FBtr0079433,FBtr0079432	1	2	2	97	2L	7313109	7313127	GAATCTGCACAACAACGAG		59	7314366	7314384	TCTTCACTGTACACGATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31906	FBgn0051906	FBtr0079412	2	1	1	63	2L	7225670	7225688	CAGATCAACAAGGATGGCA		59	7225625	7225643	GGACTTTAAGGGTGACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11266	FBgn0031883	FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638	2	7	7	117	2L	7036714	7036822	TTTATCACGTACCACAATGC		58	7036902	7036920	TATTCATGTCCAGTCGCTC		59	NA	
Drosophila melanogaster	50	CG9542	FBgn0031821	FBtr0079265	2	1	1	62	2L	6488483	6488502	ATCATACGACCAGGTTTCAG		59	6488440	6488458	GAACAAAGTGCTCTAGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vm26Ab	FBgn0003980	FBtr0079171	1	1	1	138	2L	5957439	5957457	AGAACTACCTGTTCAGCTG		58	5957559	5957577	GATCCTTAAAGTTCGCGGA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG31915	FBgn0051915	FBtr0079099	3	1	1	60	2L	5529228	5529249	GAGCATTATGGTCAATGAACTC		59	5529269	5529288	CAAATGCTTGTAGTAGTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8892	FBgn0031664	FBtr0079045,FBtr0079046	1	2	2	60	2L	4980310	4980329	TATTCTTCCCGATTTGAGGC		59	4980269	4980289	TGCATCCTCCTGAATAAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cf2	FBgn0000286	FBtr0089649	1	1	3	77	2L	4880294	4880312	CATTTAACGACTCACACGG		58	4879138	4879156	CAGATAGTCCTTCACGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15628	FBgn0031632	FBtr0077384	3	1	1	72	2L	4825676	4825696	GTAACTTTAGAGCGCTATCTG		58	4826465	4826483	TACGATCATTCAGGTACGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15440	FBgn0031607	FBtr0077454	2	1	1	60	2L	4454129	4454148	TTCGTCAACTTCATATCCGA		58	4454088	4454106	GCTTACCGTTTAGCTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bowl	FBgn0004893	FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493	3	4	4	122	2L	3780466	3780484	CACCAAGTCGTACAATCTG		58	3780569	3781912	TGAATATACCTGTGATCCCT		57	NA	
Drosophila melanogaster	50	Rrp1	FBgn0004584	FBtr0077678	2	1	1	140	2L	2971050	2971130	GGAAAGTAAACCAGCTCGA		59	2970847	2970868	GCGTCTTTATCCAATGTTACAG		59	NA	
Drosophila melanogaster	50	Rbp9	FBgn0010263	FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635	3	7	7	84	2L	2963121	2963234	CAATCTGTTAAGGTGATTCGTG		59	2963279	2963297	CAGCCTCTTCGTAATTCGT		59	NA	
Drosophila melanogaster	50	CG8813	FBgn0031476	FBtr0077628	2	1	1	60	2L	2870159	2870179	CACCTATCAGATCGATTACTG		57	2870199	2870219	TAGGCTCTCATAAATACCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14346	FBgn0031337	FBtr0077926,FBtr0077927	3	2	2	192	2L	1368285	1368303	AAACCCTGAGCACTTACAC		59	1368597	1368615	GTTAGCTCGATCACAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	lectin-21Cb	FBgn0040106	FBtr0078046	2	1	1	60	2L	620647	620665	TGTACTTAATCCGCAAGCA		59	620605	620624	ACCAGATTGCTAATGTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11912	FBgn0031248	FBtr0078099	3	1	1	62	2L	318906	318924	GTGATCCACGAGAACTACG		59	318862	318880	CTTGAGGAGAATTAGGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hop	FBgn0024352	FBtr0078131	1	1	1	80	2L	296742	296760	AGATCTTAAAGGATCCGGC		58	296804	296987	TCTGCAAGTGTTCTTTGAC		58	NA	
Drosophila melanogaster	50	spen	FBgn0016977	FBtr0078123,FBtr0078121	1	2	3	80	2L	199736	200132	CCAGTCTGAATGATTCTACGT		59	200173	200192	CACCTCGCATTAAATGATGC		59	NA	
Drosophila melanogaster	50	CG3164	FBgn0025683	FBtr0078153,FBtr0078155,FBtr0100379,FBtr0078154	2	4	4	80	2L	123790	123871	ATTACGATCCTATCATTCCCG		59	123730	123749	GTAGGACTTTAGCGAGTACC		59	NA	
Drosophila melanogaster	50	CG15322	FBgn0031088	FBtr0070005	3	1	1	109	X	20031044	20031505	TCCACTTTATGCGTATCCG		59	20031578	20031596	TGTATTTGTGTTGCTGCTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG10597	FBgn0030832	FBtr0074398	1	1	1	83	X	17125080	17125234	ATGCATCACAAACCATTGG		58	17125015	17125036	CGATTTCTTACCTTCATTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13004	FBgn0030797	FBtr0112996,FBtr0074351	1	2	2	105	X	16721788	16721806	TCATCTGCGGTTATGTCAC		59	16721631	16721719	GAGTTGATATGTGGCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15865	FBgn0015336	FBtr0074375	1	1	1	60	X	16557725	16557872	CATCTTCGAAGAGTCCACC		59	16557683	16557702	TTCTCAAAGACCACATAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12507	FBgn0030729	FBtr0074248	1	1	1	60	X	16159850	16160069	CTACGACAGATATGATGAGC		57	16159809	16159829	GTACATGTCCTCAAAGTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rab3-GEF	FBgn0030613	FBtr0112983,FBtr0073993	3	2	2	82	X	14996233	14996251	AAATGCAATTCTGGGAGGA		59	14996296	14996373	TTCAATAGGACCCTGATCCA		59	NA	
Drosophila melanogaster	50	Lsd-2	FBgn0030608	FBtr0110969	3	1	3	300	X	14968250	14968268	TAAGCTTGAGGTAAAGGCG		59	14966999	14967989	AACATTATCTTCCTCGACATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10993	FBgn0030524	FBtr0073837	2	1	1	108	X	13684884	13684902	ATATCCAACCTACCCAAGC		58	13684735	13684812	GCTTTCTTGACAGCTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL49	FBgn0030433	FBtr0073691	3	1	1	112	X	12801658	12801676	TCCAAGGAGACATTTGGAC		59	12801752	12801770	GAAGTGTATCTGACCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2658	FBgn0024992	FBtr0070503,FBtr0070502	2	2	2	133	X	2590887	2590966	CTCAGCATGGATTCATTTAACC		59	2590775	2590794	ACAAATTCCTTCACCTCCTG		59	NA	
Drosophila melanogaster	50	CG17776	FBgn0040899	FBtr0070390	3	1	1	124	X	2079001	2079020	CAGAAGAAGCCGATTAACAC		58	2079107	2079125	GTGCAGTAGTGGTAGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32816	FBgn0052816	FBtr0070101,FBtr0070102	3	2	2	72	X	211945	227599	TGACGAATTTCCGGAAGAG		59	211891	211910	CTTTAGTACAGTGATTGGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	pncr017:3R	FBgn0046756	FBtr0091956	1	1	1	61	3R	27594813	27594831	AGTCGAGAGGTCTTAACCA		59	27594853	27594874	CTTCTCTGATATCTTCATTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gcn2	FBgn0019990	FBtr0085787	2	1	1	133	3R	27223216	27223234	TCTAGAACTTCTGAGCGGA		59	27223331	27223402	GGTCCGAGTTACACTTGTC		59	NA	
Drosophila melanogaster	50	CG15534	FBgn0039769	FBtr0085644	3	1	1	76	3R	26258989	26259007	ATGTCTTGGAAACCACGAG		59	26259680	26259698	AGTCAACTCTAAGGGAGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr97Eb	FBgn0039481	FBtr0085135	1	1	1	139	3R	22916316	22916707	AAATTGACCTTGAGCTTGG		58	22916195	22916214	TCGTATCCATATGTGTAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14354	FBgn0039376	FBtr0084905	3	1	1	244	3R	21641475	21641493	TCGAATATTGCCCAGAAGG		59	21641701	21641774	TTTGTCTGTGAACCAACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kal-1	FBgn0039155	FBtr0084549	2	1	1	103	3R	19972454	19972535	AAGGAGAAGGTCTATGAACTG		58	19972928	19972946	TTCAGTTTGCTGAACTCCA		59	NA	
Drosophila melanogaster	50	CG31245	FBgn0051245	FBtr0083773	2	1	1	60	3R	15202569	15202589	CCTATAACCAAAGATTGCAGG		58	15202463	15202547	TTCTCAACAATGGGTTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7685	FBgn0038619	FBtr0083630	1	1	1	127	3R	14231130	14231211	TCCCATCAAGATTGTCAGG		58	14231302	14231320	AGTAGTTGTCGTTCAGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18622	FBgn0038460	FBtr0083377	3	1	1	202	3R	12810319	12813251	GGGTTTCGAATTGAACTAACTC		59	12809663	12809681	ATCCTCTTTGTCATCCAGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Gyc88E	FBgn0038295	FBtr0083028,FBtr0083027,FBtr0110961	1	3	3	80	3R	11013404	11013425	GTATCAGATGATACCCAAACAG		58	11013465	11013554	CTATCGAACATCTCACAGGT		58	NA	
Drosophila melanogaster	50	CG31495	FBgn0051495	FBtr0082882	2	1	1	60	3R	9664553	9664571	ATTGCTGAAGAAATTGGGC		58	9664511	9664530	TACAAGTGGACTAGAATGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082802,FBtr0082803,FBtr0082807,FBtr0082801,FBtr0100261,FBtr0082805,FBtr0082804	2	7	8	140	3R	9487451	9487469	TTATCATGGTGGGATCTCG		58	9487573	9487892	CTTCGAATTCCACAAAGCC		59	NA	InUTR
Drosophila melanogaster	50	CG7488	FBgn0038106	FBtr0082695	3	1	1	153	3R	8822346	8822421	AATGTTGTCTACACATCCG		57	8822537	8822556	ATATAGTAAGGGACACTGCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6790	FBgn0037915	FBtr0082460	2	1	1	187	3R	7403616	7403697	CTTACTTATTTCGGCTCCCA		59	7403448	7403466	ATGAGGGCTGACATAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL3	FBgn0020910	FBtr0082347,FBtr0082346	3	2	5	127	3R	7047973	7047991	GTAAGGTTAAGGCCTTCCC		59	7048082	7048293	CTTGTTGATCTTGGAGCCA		59	NA	
Drosophila melanogaster	50	TfIIFbeta	FBgn0010421	FBtr0082310	1	1	1	131	3R	6592802	6592885	CATTGAATATCGGGAGCGA		59	6592689	6592707	GTGATCTTGACCAGATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10435	FBgn0037539	FBtr0081820	3	1	1	80	3R	3837075	3837095	CCAACGTATCAGTACTATGGG		59	3836955	3837035	ATCTTCTTATCGTCGATACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3014	FBgn0037519	FBtr0081773	2	1	1	77	3R	3625707	3626428	CATCTTACGACAGTTGCCT		59	3625648	3625667	CGTTACTCCCTAATGTTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9727	FBgn0037445	FBtr0081730	1	1	1	102	3R	2280093	2280111	TAAGCTCCCGTATCAAGAG		58	2279954	2280027	TTCAAAGGTCCAATGTCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Mms19	FBgn0037301	FBtr0078778	3	1	1	130	3R	1060945	1061030	CGATGTTGTTGGTGATCTC		58	1061121	1061142	GCTTGTAGAGGAATTTAACGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9809	FBgn0037248	FBtr0078946,FBtr0078945,FBtr0078947	3	3	3	102	3R	251619	251639	GATGAATTACGCTATGTGGAC		58	251471	251555	GTTGTTCCGGCTTATTCTC		58	NA	
Drosophila melanogaster	50	CG7634	FBgn0037101	FBtr0078371	1	1	1	122	3L	21560465	21560548	GAAAGTCTATTGAAGAGGCA		57	21560633	21560651	GATCTAGAGCTTCACTGGT		58	NA	
Drosophila melanogaster	50	CG5078	FBgn0037005	FBtr0078208	2	1	1	60	3L	20499623	20499644	GGGTAATCTCATAATGGATCGT		59	20499663	20499683	GACCAAAGTTGCTACTAACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	star1	FBgn0036790	FBtr0089578	3	1	1	102	3L	18567741	18567759	ATAAGGAAACTGCGATCGG		59	18567824	18567907	CACTTATCACCGTCAGTACC		59	NA	
Drosophila melanogaster	50	CG33985	FBgn0053985	FBtr0100030	1	1	1	62	3L	15519213	15519293	GGCCATGACTTATAATCCC		57	15519169	15519187	GAATGCGGATAAACATCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34400	FBgn0085429	FBtr0112652,FBtr0112651	1	2	2	104	3L	13884423	13884441	AGTAGCTACCACTACAGCA		59	13884042	13884355	ATCCCGATAAATCTGGTGG		58	NA	
Drosophila melanogaster	50	CG6527	FBgn0036085	FBtr0076291	2	1	1	88	3L	10551829	10551909	CAAGGTGCAATGTACAGTG		59	10551759	10551778	TTATGAGGACATGTGAGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32048	FBgn0052048	FBtr0076376	3	1	2	160	3L	9568818	9574505	TAAGGTACGAGTGCAAAGTG		59	9574684	9574705	TCTATAGATGGGATGATTGAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32022	FBgn0052022	FBtr0076597	3	1	1	173	3L	8713993	8714066	AACTACCTCAAAGTGTCGC		59	8713838	8713857	CTCTGATACTTTACGCTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112712,FBtr0112708,FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713	2	7	8	90	3L	5697096	5697116	GTCACCATATAAAGCAAAGGC		59	5697168	5698077	CTTTACCGATAGGAAGCCG		59	NA	
Drosophila melanogaster	50	dyl	FBgn0066365	FBtr0073343	3	1	3	298	3L	4299067	4299086	TACTCGTATCAACTGACACC		58	4298554	4298572	GACTATGGCCATTAGGCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13931	FBgn0035258	FBtr0072802	2	1	1	229	3L	1701889	1702296	AAACTGTCATCTGGTGGTC		59	1701678	1701696	CCAAGCACTTTGTATACCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5594	FBgn0025698	FBtr0072137,FBtr0072136,FBtr0072139,FBtr0072138	2	4	4	80	2R	19801156	19801174	CACAGTCTACTTGTCCAGC		59	19801216	19801295	ATAGACTGACCGAATTTGTCC		59	NA	
Drosophila melanogaster	50	CG9897	FBgn0034807	FBtr0071989	1	1	1	80	2R	18873359	18873432	CAATAGGATTAGCAGCGGA		59	18873297	18873315	CTAAGGATCCGCACTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9313	FBgn0034566	FBtr0071521	1	1	1	84	2R	16869956	16869974	AAGAAGATGAACGTCACCG		59	16870022	16870102	TCATGAAGTCATGCGATCC		59	NA	
Drosophila melanogaster	50	CG34005	FBgn0054005	FBtr0100060	2	1	1	68	2R	13936050	13936124	TGGCTAAGTTACAGTTGGC		59	13936155	13936174	TTAGGATTAAAGCCTGCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Acp53Ea	FBgn0015584	FBtr0087080	2	1	1	60	2R	12637670	12637753	ACTGGCTCTCGTATTTGTG		59	12637628	12637648	CAACCAATTCTCCCATATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10265	FBgn0033990	FBtr0087421,FBtr0087422	1	2	2	85	2R	10881076	10881094	TACATAGTAACGCCGATCG		59	10880926	10881027	ATGTGAATCTCCTGTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10102	FBgn0033927	FBtr0087559	3	1	1	299	2R	10249281	10249448	TAGACGAGCACAGTTTGTG		59	10249000	10249018	TGAAGGTATGGACACTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsc70-5	FBgn0001220	FBtr0087568	1	1	1	74	2R	10141098	10141116	TAGTCCACGATACTGAGAC		57	10140982	10141060	TCTTTAGCTTCTCGCACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8525	FBgn0033735	FBtr0087927	2	1	1	259	2R	8313650	8313668	GATAAGGTGGCTATTGCAG		57	8313890	8313971	TAAACATTATCCATGGTGCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG34223	FBgn0085252	FBtr0112416	2	1	1	84	2R	7123447	7123525	CACCTCAAAGTTCAGTTCC		58	7123572	7123591	GGTTGAAGACGACTAAAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30005	FBgn0050005	FBtr0088464	3	1	1	84	2R	5495070	5495089	ATCAATCGATTCCAGAAGGT		58	5495133	5495216	CTGCGAGATATCTTATAATCGC		58	NA	
Drosophila melanogaster	50	CG12929	FBgn0033429	FBtr0088541	1	1	2	147	2R	5473877	5473895	GAGGGCCAGTATTACAGTG		59	5473690	5473708	CATCAGGATACTGCCACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18659	FBgn0027561	FBtr0088626	1	1	2	196	2R	5015060	5015078	ATCTACAGATCTTTGCGCA		59	5013563	5013695	CTCCTTAACCGATTTGACG		58	NA	
Drosophila melanogaster	50	CG13747	FBgn0033364	FBtr0088660	2	1	1	121	2R	4905717	4905802	GCTACTGATCAATTTGTTGACC		59	4906003	4906024	GATAAATTAGGCAGCTTGAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tsp42Ej	FBgn0033132	FBtr0089030	1	1	1	230	2R	2928037	2929080	ATTCTCATTGTGACGTGCA		59	2929328	2929346	GAAGGTGAAGAGGTAGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Stlk	FBgn0046692	FBtr0111112	2	1	2	92	2R	434474	447872	TTTGTACAAGCAGGTTTCC		58	447928	447946	GAACATAATGCTCGGAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9320	FBgn0032882	FBtr0081409	1	1	1	83	2L	20753101	20753186	TACTTTAAGGAATACGTGGACG		59	20753230	20753248	CAGATTCAGCTCAAACAGC		59	NA	
Drosophila melanogaster	50	CG13970	FBgn0032851	FBtr0089388	1	1	1	60	2L	20103854	20103873	ACCTAGATGATCTGGATGAG		57	20103813	20103832	AATAGACCCACCAATCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10263	FBgn0032812	FBtr0081265,FBtr0081263	1	2	3	224	2L	19581874	19582022	GTGATGAGCCAAACAATCG		59	19581668	19581686	AAATACATGCTTGCAGGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5783	FBgn0032670	FBtr0081049	1	1	1	87	2L	18156497	18156515	GAATCTGGTGTACAGGGAC		59	18156566	18156640	AAATCCAGATGGAGGTTCG		59	NA	
Drosophila melanogaster	50	CG17904	FBgn0032597	FBtr0080891	1	1	1	60	2L	16733497	16733518	CTGAGTTTAAGAATGTCACCAC		59	16733539	16733557	CTGGCCATAATCTTTGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3994	FBgn0028516	FBtr0080715,FBtr0080714	3	2	2	132	2L	15236713	15236731	TCATGATCTGGGTCATCAC		58	15230349	15236617	CCCATGATGACATTCACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	B4	FBgn0023407	FBtr0080514,FBtr0080513	3	2	2	121	2L	13535017	13546919	CTCTTAAAGGCTGCATGGA		59	13534914	13534932	TCTTTGTTGACTTCGTGGA		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG31851	FBgn0051851	FBtr0080454	2	1	1	60	2L	13258089	13258108	TGAAATATCGCTGGATACCT		58	13258130	13258149	GGTAGTCTCATTTCGTATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	w-cup	FBgn0032269	FBtr0080132	1	1	1	134	2L	10576863	10576881	CAAGAAGACAATTCGCGAC		59	10576687	10576771	CTGTGACTAGTAGATGTAGATAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8486	FBgn0031993	FBtr0079583,FBtr0110893,FBtr0079582	3	3	3	81	2L	8188866	8188939	GACATTTATCTGGTACGGGA		58	8188983	8189001	GCGATCGGTATAGGAAGAG		59	NA	
Drosophila melanogaster	50	CG3165	FBgn0031484	FBtr0077642	1	1	1	66	2L	2977472	2977490	ATTGAATGTGCTCTTCCAG		57	2977520	2977594	GCTCAGACCTGTTATTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10880	FBgn0031398	FBtr0077843	2	1	1	107	2L	2215602	2215620	GAATCAGATCACCGAAGAG		57	2215458	2215531	TTCTTCTTGTGACTCTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mir-303	FBgn0067702	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:D:96A	FBgn0011845	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:G3:22BCa	FBgn0011859	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG17167	FBgn0039941	FBtr0113729,FBtr0113728	2	2	2	92	XHet	53879	56997	CATCGATAAGCCTCCAGAG		59	57050	57071	GGAAGATTAAGAACAAAGAGGC		59	NA	
Drosophila melanogaster	50	if	FBgn0001250	FBtr0074357,FBtr0074358	1	2	2	82	X	16649915	16649936	CCATCAACATTCAGAAGAACTG		59	16649783	16649872	ATACTTGTCCACAGTGCTG		59	NA	
Drosophila melanogaster	50	CG9992	FBgn0030744	FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309	2	5	5	170	X	16276792	16276810	GTGGTGCTAAATAGCTCTG		57	16276573	16276660	GATCGAATTGATATCCTCCTG		57	NA	
Drosophila melanogaster	50	CG9522	FBgn0030587	FBtr0073986	1	1	1	60	X	14741877	14741895	TAGGCGTCATAATCTGCAC		59	14741835	14741853	TGCATCTATCAGAACTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32666	FBgn0052666	FBtr0073507,FBtr0073508	3	2	2	124	X	11445270	11445288	GACCTTCCTCAACATCTCG		59	11445376	11445818	CATTCATGCGATCGTTTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073484,FBtr0073488	1	2	12	200	X	11277136	11281813	AGAGATCTTGAATCAGCGC		59	11289281	11289301	TCGTATAACCAGCTATCATCG		59	NA	
Drosophila melanogaster	50	sws	FBgn0003656	FBtr0071125	2	1	2	82	X	7854138	7855220	TCACACCAATGGATCTCTG		58	7854074	7854092	CTTTAGGATCGCATAACGG		58	NA	
Drosophila melanogaster	50	peb	FBgn0003053	FBtr0100265,FBtr0070680	2	2	2	179	X	4514858	4514876	GATACGGAGAACTTCACCT		58	4515310	4515328	AACTTGATGCTGTTTGTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211	1	4	7	180	4	1080191	1080209	CAACACAACCTCTCAACAG		58	1079962	1080047	TGAGAAGAGTCCATTGCAG		59	NA	
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211	2	4	7	182	4	1080191	1080209	CAACACAACCTCTCAACAG		58	1079960	1080047	TATGAGAAGAGTCCATTGCAG		59	NA	
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	1	8	8	80	4	671649	672942	CTAACAGCACAGATTGATGG		58	671588	671606	CAAATACGGGTGAAAGCTG		59	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	1	14	14	90	3R	27691897	27691915	ATACTGCACCAGATCTTCC		58	27691743	27691843	GATATTGGATGAGGGCCTG		59	NA	
Drosophila melanogaster	50	Pli	FBgn0025574	FBtr0112908,FBtr0084527,FBtr0112907	3	3	3	94	3R	19691346	19691364	GAATCTCCCATACTGGCTG		59	19688922	19691288	AAGTAACCATTGTAGCCGA		58	NA	
Drosophila melanogaster	50	cnc	FBgn0000338	FBtr0084392,FBtr0084393	3	2	7	92	3R	19014845	19017430	GACATGAATGAGAGCTTCTG		58	19014772	19014790	GTTGCTAACATGTCCACTG		58	NA	
Drosophila melanogaster	50	Atpalpha	FBgn0002921	FBtr0089510,FBtr0089513,FBtr0089509,FBtr0089511	3	4	8	136	3R	16792304	16792323	CGATTCTTTGCATCGATCTG		59	16792914	16798904	CGAAATCAACCTTGAGTTCAC		59	NA	
Drosophila melanogaster	50	CG14301	FBgn0038632	FBtr0083692	2	1	1	89	3R	14456485	14456503	ACCGGACAACTTTCTTAGC		59	14455784	14455802	AGTATGGGATAGTCAACGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	htl	FBgn0010389	FBtr0083548,FBtr0083550,FBtr0083549	3	3	3	60	3R	13873052	13873072	GTAAGCGATCGAGTTAATCAC		58	13873012	13873030	CCAGTGTGAGATTCAATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9813	FBgn0038143	FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767	2	6	6	120	3R	9199920	9200008	TGGCAAAGGTAATGTTTGC		59	9199818	9199836	AAGTCGATGGGTATGACAC		59	NA	
Drosophila melanogaster	50	SelR	FBgn0037847	FBtr0082296,FBtr0082294,FBtr0082292	3	3	6	166	3R	6692389	6692408	CAACAAACACTACGAGAAGG		58	6689539	6692261	GTATACGTTCTGGTATGCTG		57	NA	
Drosophila melanogaster	50	Fmr1	FBgn0028734	FBtr0082200,FBtr0082198,FBtr0082199	1	3	5	192	3R	5930726	5930803	GTTTCGAATCAAGATCGCTG		59	5930471	5930489	AAGCTGCTGATCAATCTCC		59	NA	
Drosophila melanogaster	50	CG8147	FBgn0043791	FBtr0082060,FBtr0100522	3	2	2	60	3R	5321943	5321962	AGAAAGAACGATATCTTCGG		57	5321985	5322003	CATATGGAAGATCATCCGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10277	FBgn0037442	FBtr0113198,FBtr0081722,FBtr0081720,FBtr0081721	2	4	4	89	3R	2211842	2211860	AACAAGTACGACACCTGTG		59	2211913	2212068	CGTGTGATAGGGATGTGAG		59	NA	
Drosophila melanogaster	50	CG6838	FBgn0037182	FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186	2	4	4	89	3L	22709293	22709406	GTCAGTAAGGATCCAAACC		57	22709222	22709240	ATTAAGCAGATTCACGCTG		58	NA	
Drosophila melanogaster	50	CG33054	FBgn0053054	FBtr0078317	3	1	2	174	3L	21190888	21190906	CCTACGAATCTGTACAAGC		57	21190610	21190628	TAGACAACAATCTCCAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10724	FBgn0036357	FBtr0075845,FBtr0075846	2	2	2	61	3L	13409017	13409104	TATCATCAAGAATGCCCATCC		59	13409127	13409145	TGTTATTGTCCAGCCAGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	ect	FBgn0000451	FBtr0076306	2	1	3	300	3L	10188715	10188733	CCAAACTCTGGATGAGGTC		59	10187360	10188005	CTTTGTGATCTGTGCTTCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326	2	11	11	88	3L	9773790	9773876	CTCATGAGATCTTTGTGCA		57	9773928	9773946	CTCATACTTGATCCAACGG		57	NA	
Drosophila melanogaster	50	CG1146	FBgn0035346	FBtr0072921,FBtr0072922,FBtr0072923	2	3	3	69	3L	2491992	2492010	CTACTCCATCACCGATCTC		58	2492043	2492061	TTCGTTGATGTACGTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sox14	FBgn0005612	FBtr0072158,FBtr0072157	1	2	2	60	2R	19872011	19872029	AGACAACATTGTGAACGAC		58	19872050	19872071	CACATATGGAGGTATTTGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TBPH	FBgn0025790	FBtr0089627,FBtr0089626,FBtr0089625,FBtr0089624	2	4	4	144	2R	19748031	19748104	CATTATCAAGGGCGTTTCG		59	19747905	19747924	ATTCATGTGGTTACCCTGTG		59	NA	
Drosophila melanogaster	50	asrij	FBgn0034793	FBtr0071902	3	1	1	293	2R	18774489	18774508	TTCAGTTACCAGCAGAAGTG		59	18774764	18774843	CATTGAACCAGAGTCCAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0086456,FBtr0086451,FBtr0100392,FBtr0086457,FBtr0086454	2	14	15	96	2R	15359155	15359173	ACAAGTGGATGAACATGGG		59	15359233	15360333	ACTAGAGCTTCTATCCGCT		59	NA	
Drosophila melanogaster	50	CG12442	FBgn0033770	FBtr0113076,FBtr0087849	2	2	2	65	2R	8587976	8587994	CATCGACGATATGGTCGAG		59	8588023	8588041	CTTTCCACATCCTGTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13213	FBgn0033609	FBtr0088180,FBtr0088178,FBtr0088179	2	3	3	81	2R	7174275	7174293	CCAGAAGCTAAAGGTCCTG		59	7174159	7174232	AGGTGAGTCCATAATTTCCTG		59	NA	
Drosophila melanogaster	50	Tsp42Ej	FBgn0033132	FBtr0089030	1	1	1	81	2R	2929211	2929229	GGTGTCGTACAAGTATTCC		57	2929328	2929346	GAAGGTGAAGAGGTAGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9447	FBgn0033110	FBtr0086206	3	1	1	87	2R	2762345	2762423	ACTAATGGATCGACGACAG		58	2762276	2762296	GAAATCTGAGTTATACGGCTC		58	NA	
Drosophila melanogaster	50	CG14464	FBgn0033000	FBtr0111283	3	1	2	68	2R	716971	716989	AATATTCGCTCAAACGGTC		58	717073	717092	ATTATACCAGCAACCATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	p120ctn	FBgn0015587	FBtr0111113,FBtr0111114	1	2	2	60	2R	487558	487579	CGACTGCTATCTTATGATTCTC		58	494275	494294	AATTACGTAAAGCACCACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	rtGEF	FBgn0015803	FBtr0112884	2	1	4	102	2L	20356711	20356729	CAATGCCAATAATCCCAGC		59	20356795	20356887	ATGTTGACTCAGATGAGCG		59	NA	
Drosophila melanogaster	50	CG32970	FBgn0052970	FBtr0114461,FBtr0080622	1	2	2	79	2L	14309126	14309144	CAACACTTTATACCGCTGC		59	14309420	14309438	TTAGGCTGGCTTTCTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	kuz	FBgn0015954	FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660	1	5	5	86	2L	13634172	13634250	ACCTACAGAGATTTCACTGG		58	13634298	13634317	GTACTTCTCGCAAATTCCAC		59	NA	
Drosophila melanogaster	50	CG13138	FBgn0032211	FBtr0080066,FBtr0080067	3	2	2	60	2L	10300363	10300381	CAACGTAGACCTAAGTCCA		58	10300321	10300339	TATGGAGAATGGCATACCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nhe3	FBgn0028703	FBtr0112942,FBtr0079318	3	2	3	98	2L	6680539	6680961	TATCAAGTGCACAGTTCTG		57	6680459	6680477	CAAGTTCGTATCTGTTCCA		57	NA	
Drosophila melanogaster	50	pgant5	FBgn0031681	FBtr0079026,FBtr0111024	1	2	2	112	2L	5077708	5077787	CTCAACTTCCGATGGTACC		59	5077614	5077633	TTATCGATGGAGAACAGACC		58	NA	
Drosophila melanogaster	50	CG7337	FBgn0031374	FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012	3	5	5	130	2L	1937464	1937482	CACAATACGGAGAATGGGA		59	1937576	1938518	CTATGGCCTACATTCTCCA		58	NA	
Drosophila melanogaster	50	CG2807	FBgn0031266	FBtr0078068	1	1	1	60	2L	570338	570357	ATTCTTCCGTTGCTTATGTC		58	570377	570398	CCTTCACTAATAAATGACGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11245	FBgn0030388	FBtr0073646	1	1	1	178	X	12341653	12341671	GATTCATCCAATTCCAGCG		58	12341811	12341964	TCTAACATCTTCTTGGGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gga	FBgn0030141	FBtr0071363	3	1	1	131	X	9496702	9496789	CTTGTAGCTGACACTCTGG		59	9496883	9496902	TGAACTAGCTACTGTTGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ssl2	FBgn0041780	FBtr0085343	1	1	1	60	3R	24857551	24857569	CAGAGGACTTTGTCTTTGC		58	24857442	24857527	TTCTTTACGCGATCGTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31550	FBgn0051550	FBtr0078685,FBtr0113409,FBtr0078684	3	3	3	246	3R	1314709	1314728	CTAAAGGAGGACAACATTGG		58	1314990	1315101	GACGTGGATTGTTCAAAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34258	FBgn0085287	FBtr0112452	1	1	1	180	3L	19944669	19944741	CACTTTATTGCAACTCGGA		58	19944507	19944525	CCTTATCACTTCCATCCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Atg12	FBgn0036255	FBtr0089325	2	1	1	83	3L	12130392	12130485	AATTACATTTGCACCTGCC		58	12130532	12130550	TAGTAGAGCACCAGTTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Alg10	FBgn0052076	FBtr0076217	2	1	1	196	3L	11158853	11158935	AGAGTTGTGGCTTCAACTC		59	11159095	11159113	TGGCGAAGTAGAATAGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3434	FBgn0036000	FBtr0076473	3	1	1	63	3L	9452787	9452805	TTCACCACCTGTACAAGAC		59	9452683	9452761	TAAAGGTTGTGAACCATCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5428	FBgn0034887	FBtr0114541	3	1	1	225	2R	19569939	19569957	AACATCTTCTTCACCAGCT		58	19570146	19570224	GAACGAACCTGAACTCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	sPLA2	FBgn0033170	FBtr0088972,FBtr0100138	2	2	3	69	2R	3330818	3330836	CGAGATTATCGAGTCCCAC		59	3330869	3330954	CTTGAGGATGGGAAACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17510	FBgn0039969	FBtr0086073,FBtr0086074	3	2	2	84	2R	1491808	1491826	AAGGAGTATACGTCTGGCT		59	1491511	1491761	TATATTCCTCTAGGGAGCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32972	FBgn0028905	FBtr0080599,FBtr0080600	1	2	2	130	2L	14164509	14164587	ATGATGTGACTCTCACCAC		58	14164397	14164415	CTGCAGGATATCTCCAACG		59	NA	
Drosophila melanogaster	50	Gyc32E	FBgn0010197	FBtr0080223,FBtr0112856	2	2	2	81	2L	11143213	11143231	ATACCAACCACAAAGACCC		59	11143084	11143170	CAATGAAGACATAGATGCGAG		58	NA	
Drosophila melanogaster	50	aru	FBgn0029095	FBtr0078033,FBtr0078031,FBtr0078032	3	3	3	93	2L	864329	864407	TGAAACAGGGAACATAATCG		57	864255	864274	GTTGTTGTATAGCTCCATGG		58	NA	
Drosophila melanogaster	50	snoRNA:MeU2-C28	FBgn0065057	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-G2703b	FBgn0082930	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30229	FBgn0050229	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi28S-3436b	FBgn0086602	FBtr0091803	3	1	1	119	X	6636490	6636509	AACTAGGTGGTTATCCTCCA		59	6636390	6636408	CAAGGTTCAGGTAGAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-2179	FBgn0086666	FBtr0091922	1	1	1	79	X	658040	658059	GGTTATAGTGAGTTCACTCC		57	657980	657998	TTCCAGAAGTTGTTAACCG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	hydra	FBgn0031128	FBtr0077294,FBtr0077295	3	2	2	192	X	20542569	20542708	CCTTAAAGTAGAAGTCGTGG		57	20542396	20542414	GTATCCTCCCAGAGATAGG		57	NA	
Drosophila melanogaster	50	CG15455	FBgn0031121	FBtr0077314	1	1	1	73	X	20413032	20413050	AAGTTCAATGATCTGCGGT		59	20424611	20424630	GTTGAGATGACAATCGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11943	FBgn0031078	FBtr0074798,FBtr0074799	1	2	2	80	X	19747833	19747915	GGATCTGGTCTATAGCACG		59	19747959	19747977	TTGGAGTTCATGAAGTCGA		58	NA	
Drosophila melanogaster	50	RpS10b	FBgn0031035	FBtr0074731,FBtr0074732	3	2	2	98	X	19492188	19492206	TATTACGATACGTTCGCGT		58	19492495	19492513	AAGAGGTACTCGTAGATCG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Grip84	FBgn0026430	FBtr0074775,FBtr0074777,FBtr0074776	2	3	3	80	X	19457156	19457175	TCTCCAAGTACCAAATGCTC		59	19457033	19457114	TTTCCTTCCAAATCTTGCAC		58	NA	
Drosophila melanogaster	50	CoRest	FBgn0053525	FBtr0091483	2	1	5	147	X	19418059	19418078	TACTACTCGTGGAAGAAGAC		58	19418187	19422683	GCCTATTCTTCTTGTCATCG		58	NA	
Drosophila melanogaster	50	Pfrx	FBgn0027621	FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720	3	8	8	60	X	19402026	19402044	GTTAAACGAGATCGATGCC		58	19402068	19402086	CTTCTCCTTGATTTGCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vav	FBgn0040068	FBtr0113316	1	1	3	94	X	19159261	19159279	CTACATCTACAGCGAGGAC		58	19159337	19163303	TATTGTCGGTGGTAACCTC		58	NA	
Drosophila melanogaster	50	CG6540	FBgn0030943	FBtr0074601	1	1	1	75	X	18543309	18543327	TAACATCATATCGCCGCAG		59	18543366	18543384	GAATATCAGGTCCATGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32547	FBgn0052547	FBtr0114369	1	1	1	113	X	18341147	18341227	TCTTCCTGCTGATGTACTG		58	18341052	18341070	GATGCTCGTACATCATGAC		58	NA	
Drosophila melanogaster	50	CG15055	FBgn0030919	FBtr0074561	3	1	1	84	X	18318472	18318490	CTATGGCTCCTATAGTGCC		58	18318538	18318556	GTATTTCACAACTGGAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	upd3	FBgn0053542	FBtr0113465	1	1	1	98	X	18174129	18174147	GACTCTGGACATTGTCGAG		59	18174209	18177440	CGAAGGTTCAACTGTTTGC		59	NA	
Drosophila melanogaster	50	CG7192	FBgn0030894	FBtr0074527,FBtr0074528	3	2	2	84	X	17992532	17992620	GTGAATGATATACCTACACTGC		58	17992469	17992487	ACAAGATCTGACGTTCCAG		59	NA	
Drosophila melanogaster	50	CG8142	FBgn0030871	FBtr0074472	1	1	1	266	X	17737802	17737820	GATCTGTTCGAGATGTCGG		59	17737492	17737510	GATCTGCAGATACTCGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	par-6	FBgn0026192	FBtr0074456,FBtr0074455	2	2	2	83	X	17598560	17598579	TAACAACGACGATAACTTCG		58	17598624	17598710	TTAAGATCATCCTTTCGCTG		57	NA	
Drosophila melanogaster	50	f	FBgn0000630	FBtr0074424,FBtr0074421,FBtr0074423,FBtr0074420,FBtr0074422	1	5	6	106	X	17173603	17173622	AGAAGATGAAAGTGGAGCAG		59	17173691	17173774	CAAGTAGATCTGGTCCACG		59	NA	
Drosophila melanogaster	50	CG13011	FBgn0030771	FBtr0074318	2	1	1	182	X	16573629	16573647	ATCCTACAGTCTCATTCGG		58	16573936	16574028	TAGCCCATGTAATAGCAGG		58	NA	
Drosophila melanogaster	50	Graf	FBgn0030685	FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197	1	6	6	80	X	15646356	15646433	AACCAATGTTCGTTACTCC		57	15646294	15646312	TAGTTCTCCGGAATGAGTC		58	NA	
Drosophila melanogaster	50	cngl	FBgn0029090	FBtr0089294,FBtr0089293	1	2	2	81	X	15293119	15293253	GCCTAATGGTATACGACGA		58	15293056	15293074	ATCAGCGCTATCATATCGA		58	NA	
Drosophila melanogaster	50	CG9123	FBgn0030629	FBtr0074019	3	1	1	90	X	15235941	15235959	TTCAAGCTCATCAAATCGC		58	15235869	15235887	ATCTTGCATAGGAGCTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lsd-2	FBgn0030608	FBtr0110969	2	1	3	102	X	14966835	14966854	GTAGGCATTATCGATAGGGA		58	14966646	14966664	TGTGTAGGACTGGATCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	rut	FBgn0003301	FBtr0073992	3	1	1	110	X	14689077	14689095	GAGATGGATGTGCTACAGG		59	14688852	14689004	GTAGAGTTCCATGTTGTTGC		59	NA	
Drosophila melanogaster	50	Jafrac1	FBgn0040309	FBtr0073763,FBtr0073764	3	2	2	99	X	13225456	13225474	CTGACAAGTCGATGAAGGT		59	13225537	13225555	AAGTTCTGCTTGTCATCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pde9	FBgn0052648	FBtr0073701	2	1	1	80	X	12688608	12700941	GACACCTTCAATAACATTCGC		59	12688548	12688567	CGTGAGGATTTCATTGTGAC		59	NA	
Drosophila melanogaster	50	Gtp-bp	FBgn0010391	FBtr0073480	2	1	1	251	X	11022187	11022205	GTACCAGAACATCAACAGC		58	11021867	11021885	TTCGATATCAGATGGTCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	2	8	9	95	X	10692568	10692661	CGAATAAGGGTGAAATTTGC		57	10692492	10692510	GCATGATCCGTTTAATGGT		58	NA	
Drosophila melanogaster	50	CG1791	FBgn0030163	FBtr0112968,FBtr0071429	3	2	2	170	X	9857893	9857911	TACTTGGTGCCTACAAAGG		59	9857681	9857760	ATGTACCAAACAAGTTGCTC		58	NA	
Drosophila melanogaster	50	ld14	FBgn0030090	FBtr0071349	2	1	1	113	X	9020331	9021112	TTGATTGCACAAACTGCTG		59	9020236	9020254	CTATCATCTCATCCCAGCC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15036	FBgn0040922	FBtr0071060	3	1	1	70	X	7318784	7318802	TGGAGTGTTTAAGCCTTGG		59	7318732	7318750	TATCCGTATACATCCGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34337	FBgn0085366	FBtr0112539	2	1	1	63	X	7311349	7311367	ATTTATGGGTCAGAGCTGC		59	7311393	7311412	CATTTCACCAAATTTGGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100214,FBtr0100208,FBtr0100200,FBtr0100215,FBtr0100217,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100201,FBtr0100206	1	11	15	113	X	6979981	6981658	CCATCCGGAATGGATACAG		59	6979886	6979904	TAAATTGTTGGCACTCCCA		59	NA	Nonspecific
Drosophila melanogaster	50	l(1)G0255	FBgn0028336	FBtr0070954,FBtr0070953	3	2	2	86	X	6575393	6575476	ATTCGGCTATTGTCTGATGG		59	6575524	6575543	GATCTTGGCAATATTCTCGC		59	NA	
Drosophila melanogaster	50	CG14443	FBgn0029880	FBtr0070949	3	1	1	60	X	6529736	6529754	TGGTGATCTATGTGAAGCG		59	6529778	6529796	CAATTCCGGATCAAATCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tre1	FBgn0046687	FBtr0070848	3	1	1	89	X	5568182	5568269	CAATCGCAACTACAGAGTG		58	5568111	5568129	TAGTTTCTACTCGGCATCG		58	NA	
Drosophila melanogaster	50	CG3239	FBgn0029769	FBtr0070793,FBtr0070792	3	2	2	60	X	5389203	5389223	GGAATCCTGGCATATAGATCG		59	5389163	5389181	ATGACTGAGGATCTGTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3568	FBgn0029710	FBtr0070676	3	1	1	217	X	4438006	4438024	GTGGTACACTTCTCATGGT		58	4438204	4438280	CTGATTAGCATATTCGCCCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32776	FBgn0052776	FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630	1	4	4	85	X	3791669	3795148	GAGTCTCGATGATGACTACG		59	3791603	3791623	CGGGATGATCAATAATCTCCA		59	NA	
Drosophila melanogaster	50	Rala	FBgn0015286	FBtr0070584,FBtr0070583,FBtr0070582	1	3	3	95	X	3603936	3603954	GATAACTACTTTCGCAGCG		58	3602942	3603880	GATTTGTTCTCTGAATTCCTGG		59	NA	
Drosophila melanogaster	50	CG8310	FBgn0040377	FBtr0070450	3	1	1	219	X	2473970	2474043	GGCAAGATCATTGAGACCA		59	2473769	2473787	CCAACTCATAGGTGTCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3091	FBgn0029608	FBtr0070416,FBtr0100226	1	2	2	108	X	2147526	2147544	CACATCTGTTCATGGATCG		58	2147384	2147402	ATGAGCTTATTTCCCTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	msta	FBgn0053548	FBtr0070421	3	1	2	60	X	2106976	2106994	ACGCCAAGTTACTATGGTC		59	2106934	2106953	AAGTGCTTAGTCATTCCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3835	FBgn0023507	FBtr0070383,FBtr0070382,FBtr0070381	2	3	3	95	X	2038240	2038324	TTCAAGTTCCTGAACTCCC		59	2038383	2038401	GTTGATCTTCTCCTCGTCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG17766	FBgn0023510	FBtr0070316	3	1	1	60	X	1806805	1806826	CTTCGACTTTCTGATGAAACAC		59	1806846	1806865	ATTAGTACGAAGACCCTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Edem1	FBgn0023511	FBtr0070352,FBtr0070353	2	2	3	88	X	1801464	1801542	AAAGTTGGAACTGAGGGAG		59	1801394	1801412	GCAGTTCATCGTAGTTGGA		59	NA	
Drosophila melanogaster	50	CG14782	FBgn0025381	FBtr0070259	3	1	1	101	X	1373462	1373480	ACGGAAACATAGTGATTGG		57	1373545	1373563	TTCTGTACGTCTGGTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab27	FBgn0025382	FBtr0070294	3	1	2	80	X	1368834	1368852	CATCGACTACGATTACCTG		57	1368772	1368790	GTGTACTGGTAGAGGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	png	FBgn0000826	FBtr0070234	1	1	1	60	X	1250748	1250766	CCTACCAGACATCTTCCAC		59	1250706	1250725	GAAGTAATGCTTGTAGAGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12773	FBgn0024365	FBtr0070235	3	1	1	176	X	1246461	1246479	AACCTATGGCCAAAGTACG		59	1246246	1246321	CAAGTACAGGAACGTGGAG		59	NA	Nonspecific
Drosophila melanogaster	50	CR41612	FBgn0085821	FBtr0114279	1	1	1	155	U	7404861	7404879	AATGTTGCTGATTCTGCTG		58	7404998	7405016	ACCAGTTGAGTGTGAACAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40639	FBgn0085758	FBtr0114208	1	1	1	60	U	9455996	9456015	TGAAGATTGAGATAGTCGGG		58	9456038	9456056	CAGAACGAGCACATAAACC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41588	FBgn0085712	FBtr0114161	1	1	1	60	U	7505851	7505869	GTCAACAGAGTACAACAGG		57	7505893	7505911	ATGGCGTCGTATTAATGCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40624	FBgn0085502	FBtr0113914	2	1	1	99	U	6539844	6539862	CTTAGCCGTCTGATTTGGA		59	6539925	6539943	CTTCCTTCAAATGGTCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41555	FBgn0085686	FBtr0114135	2	1	1	96	U	4873346	4877303	GAAAGAAACCGCTGATACG		58	4877362	4877381	TCTCGTCTCCATAATAACGG		58	NA	
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0100296	2	1	5	162	4	1043003	1043021	AGAAGGGAATACACCAACG		59	1036238	1042878	TTCTCCACTCGTTAGAACAC		59	NA	
Drosophila melanogaster	50	CG11148	FBgn0039936	FBtr0089250,FBtr0089249	2	2	3	185	4	886491	886567	TTGGCAATAACTCTCGTCC		59	886265	886342	CGGCCTTTGATATAACCGA		59	NA	
Drosophila melanogaster	50	CG11337	FBgn0039846	FBtr0085812,FBtr0085811	3	2	3	81	3R	27230181	27230199	AAGGAGAGGAATCCAAAGC		59	27230062	27230136	GAAGGTCATGTTACGTCCA		59	NA	
Drosophila melanogaster	50	Gcn2	FBgn0019990	FBtr0085787	1	1	1	132	3R	27223217	27223235	CTAGAACTTCTGAGCGGAG		59	27223331	27223402	GGTCCGAGTTACACTTGTC		59	NA	
Drosophila melanogaster	50	CG1544	FBgn0039827	FBtr0085755,FBtr0113311,FBtr0085756	2	3	3	87	3R	27027534	27027614	GAAGACTTTAACATCCATCCC		58	27027663	27027681	ACCAATCGATCTTGACTCC		59	NA	
Drosophila melanogaster	50	dco	FBgn0002413	FBtr0085743	1	1	3	144	3R	26886813	26886831	AATTGAAACGAAAGCGCAG		59	26884335	26886100	TGTATTCGAAGGGTTCGTG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG15528	FBgn0039742	FBtr0085591	3	1	1	137	3R	25875128	25875233	CCAGAACTTTGTAGCTATTCAG		58	25875012	25875030	CCCAGTTTGTCCATGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nlp	FBgn0016685	FBtr0085552	3	1	1	137	3R	25831117	25831135	AAGGAGAACGAGTTCAACG		59	25835492	25835510	CTTGAATGTCACCTTCGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15817	FBgn0028476	FBtr0085395,FBtr0085396	1	2	2	80	3R	25057749	25057767	TAATTGCATCAGGGAAACG		58	25057811	25057895	GCTATGTATCCATTTGCGA		57	NA	
Drosophila melanogaster	50	CG5646	FBgn0039525	FBtr0085210	1	1	1	109	3R	23386077	23386095	TACCACAACATGTTCCTGG		59	23385927	23386006	TCACTGTAATAAGTGGCTGTC		59	NA	
Drosophila melanogaster	50	CG14253	FBgn0039467	FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074	3	5	5	84	3R	22809872	22809890	CCAGTATGCCTATGGAAGG		59	22809935	22810014	CGGTAACTTAAAGATTTGGCTC		59	NA	
Drosophila melanogaster	50	CG14545	FBgn0040602	FBtr0084913	1	1	1	60	3R	21676484	21676502	AGCATTGAGACTACGATGG		59	21676442	21676461	ATGACATCGGTGTACATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tok	FBgn0004885	FBtr0084689,FBtr0084690	1	2	2	86	3R	20568665	20568888	CAGTCACAGAGTCAGAGTG		59	20568938	20568956	ATTCTTGTAGCTGGATGCT		58	NA	
Drosophila melanogaster	50	CG5768	FBgn0039198	FBtr0084620	3	1	2	173	3R	20215502	20215521	TTAGTTTGGGCATCAATTGG		58	20212185	20215366	CATTATAGCCCATGCTGTC		58	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	2	5	6	82	3R	20045369	20045389	CATGAACATCTACAACGAACC		59	20025659	20045326	GTGGATTCACGGTAAATGAC		58	NA	
Drosophila melanogaster	50	Aats-glupro	FBgn0005674	FBtr0084511	2	1	2	100	3R	19782483	19782560	GAACCAAATACAAGGTGTACC		58	19782403	19782421	GTCATGGTACTCAGTGGTG		59	NA	
Drosophila melanogaster	50	Gdh	FBgn0001098	FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498	2	4	4	97	3R	19763339	19763461	AAGCTAAGATCATTGCCGA		59	19763260	19763278	GTACAGATCGGGAATGACC		59	NA	
Drosophila melanogaster	50	Hmgcr	FBgn0001205	FBtr0084451,FBtr0084450	3	2	2	70	3R	19574394	19574477	TATCATCAAATGGCTGACCA		59	19574510	19574528	TAACTACCAAGGCGATGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Irk2	FBgn0039081	FBtr0084426,FBtr0084425	1	2	2	87	3R	19340991	19341009	TCTTTGCTCTCATCTGGTG		59	19340869	19340940	CAACCAGATTCCTCTTGGT		59	NA	
Drosophila melanogaster	50	CG6763	FBgn0039069	FBtr0084378	3	1	1	60	3R	19111410	19111428	CCAGAGGAATGGTTTCTCC		59	19111452	19111470	GCCACAATCGTACATACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6921	FBgn0038985	FBtr0084262,FBtr0084261	2	2	3	86	3R	18380434	18380453	ATAAAGATTGTCGAGGAGCG		59	18380566	18380585	CATAGGTGAGCTCATTAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7046	FBgn0038979	FBtr0084259	2	1	1	86	3R	18319252	18319271	ATCTATGAAGCTCCGTTGTC		59	18319320	18319338	CATTGCTTCATCCTTGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sar1	FBgn0038947	FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208	3	5	5	60	3R	18184317	18184336	TTCACTACATTCGACTTGGG		59	18185255	18185273	GGAAGTAGTCCTTCCAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31423	FBgn0051423	FBtr0084248	3	1	1	60	3R	17944320	17944338	TGATTGTCATAGTGCCCTG		59	17944278	17944298	CCCAATTTGTGAAGTACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	how	FBgn0017397	FBtr0084177	3	1	3	119	3R	17897749	17900174	ATGCTGATCATAGCGTAGG		58	17900257	17900275	GTATCTCAATGAAACCCGC		58	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	2	22	22	85	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202453	17202548	GTTCAGGAATACGATAGCG		57	NA	
Drosophila melanogaster	50	CG17298	FBgn0038879	FBtr0084056	1	1	1	154	3R	17109002	17109317	CAAAGTACTGTTCGTGCTC		58	17109435	17109515	GATGAACAACATGGGAGTG		58	NA	Nonspecific
Drosophila melanogaster	50	RhoGAP92B	FBgn0038747	FBtr0083821	3	1	1	106	3R	15737488	15737506	GAGTTCTACTTGACCCTGC		59	15737575	15738046	CTCTCCATGACTTCACTGTC		59	NA	
Drosophila melanogaster	50	CG4572	FBgn0038738	FBtr0083861,FBtr0083860,FBtr0083862	2	3	3	60	3R	15688809	15688827	GTGGGCAATAAGACATTCC		58	15688767	15688785	TCTTCAAGTGAAGTTCCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11659	FBgn0038731	FBtr0083797	3	1	1	80	3R	15602169	15602249	GGCAACTATCATCTGACCA		59	15602107	15602125	AATGGTGGTAAGCAAACCA		59	NA	Nonspecific
Drosophila melanogaster	50	Vha13	FBgn0026753	FBtr0083804	3	1	1	194	3R	15469501	15469519	GAGGAGATCGAGAAGTTCC		58	15469266	15469284	GATGTTGTACACGTACTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31221	FBgn0051221	FBtr0083762,FBtr0083763	1	2	2	121	3R	15279980	15282852	CTAATGAGATCGGACCTGG		58	15282937	15282955	AAGAAGAACTTCACATCGC		58	NA	
Drosophila melanogaster	50	CG31221	FBgn0051221	FBtr0083762,FBtr0083763	1	2	2	121	3R	15279980	15282852	CTAATGAGATCGGACCTGG		58	15282937	15282955	AAGAAGAACTTCACATCGC		58	NA	
Drosophila melanogaster	50	CG5629	FBgn0027595	FBtr0083752,FBtr0083753	1	2	2	88	3R	14967736	14967823	AATACAAGCACAAGCTGGT		59	14967666	14967684	CAGCTCGTAGGAATCTGTG		59	NA	
Drosophila melanogaster	50	CG7669	FBgn0038607	FBtr0083576	3	1	1	139	3R	14188615	14188633	GAAGGACATTGTTTCGCTG		59	14188736	14188809	TAGCAGTAAGTGGTTGCTG		59	NA	
Drosophila melanogaster	50	PKD	FBgn0038603	FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592	1	4	4	196	3R	14131625	14132352	AGCAGCTCACTGAATATCC		59	14131447	14131465	GTATTGTACTGGCAGTCCC		59	NA	
Drosophila melanogaster	50	PP2AB	FBgn0042693	FBtr0083556,FBtr0083555	1	2	5	262	3R	14000710	14000728	ATCTATTCTACACGCCACC		58	14001241	14001333	GACAGCAAACATATTGATCG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG7785	FBgn0038564	FBtr0083539	1	1	1	80	3R	13848324	13848345	CTTCAATGGAAAGAATCTGGAG		59	13848385	13848461	CCATTGCCCACATAAATGAC		59	NA	
Drosophila melanogaster	50	CG7379	FBgn0038546	FBtr0083529	1	1	1	147	3R	13622584	13622663	GCAATCAGATCTCCTTTGG		58	13622455	13622473	ATTACATTTGGCCGTTCTC		58	NA	
Drosophila melanogaster	50	CG7523	FBgn0038533	FBtr0083490	2	1	1	97	3R	13496053	13496136	CATCACATATCTCTTCGATCAC		58	13495977	13495995	CCTTCTGCATGTTAGTCTC		57	NA	
Drosophila melanogaster	50	CG31190	FBgn0051190	FBtr0089444,FBtr0113397,FBtr0089443	1	3	4	82	3R	13308082	13308442	TAAGTCGCAGCTATGACAG		59	13308018	13308036	CATGCGAATCAGAAAGGTG		59	NA	
Drosophila melanogaster	50	CG31190	FBgn0051190	FBtr0089444,FBtr0113397,FBtr0089443	2	3	4	83	3R	13308082	13308443	ATAAGTCGCAGCTATGACAG		59	13308018	13308036	CATGCGAATCAGAAAGGTG		59	NA	
Drosophila melanogaster	50	CG31266	FBgn0051266	FBtr0083403	2	1	1	60	3R	12958870	12958890	CAAAGAATATAACCTTGGCGG		59	12958912	12958930	GCAAAGGTCAACTTATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ahcy89E	FBgn0015011	FBtr0083378,FBtr0083379	2	2	2	124	3R	12804736	12804817	ATTGATGTGAATGGCTTGC		59	12804630	12804648	AAATTCACCAGTCTTCCCT		58	NA	
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0083265,FBtr0083263	2	2	8	82	3R	12118543	12121396	ATTAGGATCACATGCAGAGG		59	12121441	12121459	GCAACTCCATAACAAGAGC		58	NA	
Drosophila melanogaster	50	CG12785	FBgn0038410	FBtr0083275	2	1	1	82	3R	12094588	12094673	GTGGGACTACTAAGATCTGC		59	12094525	12094543	CATACAATGCCCAGTTCCT		59	NA	
Drosophila melanogaster	50	mtSSB	FBgn0010438	FBtr0083277,FBtr0100152	1	2	2	101	3R	12030246	12030624	CAACTACAAATATGAGAACGGC		59	12030166	12030184	TTCAAGTATTCCAGCACGG		59	NA	
Drosophila melanogaster	50	Mhcl	FBgn0026059	FBtr0083233,FBtr0083229	1	2	6	165	3R	11895717	11895735	GCTCTATCAGTGATCTGGA		57	11894322	11895588	TACTTGGCGTTATTTCTCG		57	NA	
Drosophila melanogaster	50	CG31292	FBgn0051292	FBtr0083199	1	1	1	60	3R	11732355	11732373	GACCCTCTCGAAGAATCTG		59	11732397	11732415	CACCTTGTAGAGGTATGGA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34274	FBgn0085303	FBtr0112469	3	1	1	85	3R	11558091	11558162	TTGCTTTATCAAGTTACGCG		59	11558210	11558228	CACGCAGATAATGTTCGTC		58	NA	
Drosophila melanogaster	50	CG6196	FBgn0038323	FBtr0083116	1	1	1	78	3R	11176180	11176198	ATCTAGGCATTAACAGCAC		57	11176120	11176139	TTCCTGTTCACTTCTATGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4338	FBgn0038313	FBtr0083066	3	1	1	60	3R	11102007	11102026	TAAGGTGCAGAATGAGTACC		59	11102049	11102067	AAGATCCCTAGGCTTATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpr9	FBgn0038282	FBtr0089376	3	1	1	81	3R	10888195	10888854	CTGAATGTCGTTGAACCCT		59	10888132	10888153	AGGTAAGGTTTATAGTGGAACC		59	NA	
Drosophila melanogaster	50	CG7886	FBgn0038248	FBtr0082976	1	1	1	111	3R	10453562	10453582	GCAGTGAGATTAAGTATGTGG		58	10453393	10453492	GAGGGATTAAGCTTGAAATCTC		58	NA	
Drosophila melanogaster	50	CG9722	FBgn0038209	FBtr0082906	2	1	1	60	3R	9979239	9979258	CACTTACTGCTGATAAACGG		58	9979198	9979216	ACCACAAATATCCAGGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34383	FBgn0085412	FBtr0112624,FBtr0112623	2	2	4	85	3R	9582377	9582623	AGATCAGGAACTTGGATGTC		59	9582671	9582689	TCTCCTCAACTGAATCAGC		58	NA	
Drosophila melanogaster	50	Task6	FBgn0038165	FBtr0082850	1	1	1	93	3R	9496548	9496643	CTTTAACCACTATAGGCTTTGG		58	9496476	9496495	AATATCAGTGCGAACATCAC		58	NA	
Drosophila melanogaster	50	CG8863	FBgn0038145	FBtr0082751,FBtr0082753,FBtr0082752,FBtr0082755	3	4	5	211	3R	9210112	9210130	GATGACCAAGTGTATTGCC		58	9210395	9210413	GTTGCTTGGGATCAAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	yellow-f	FBgn0041710	FBtr0082723	2	1	1	96	3R	8818257	8818275	GAGCAGAACCTAGTGTCTG		59	8818113	8818197	GGCGATTATTGGGAAACTC		58	NA	
Drosophila melanogaster	50	CG14387	FBgn0038089	FBtr0082683	2	1	1	75	3R	8718229	8718247	TTTCATCTTCGGTCGAGAG		59	8718286	8718357	AAATCGACCATGTCCAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5844	FBgn0038049	FBtr0082591	2	1	1	167	3R	8259974	8259992	AAATTTGGAGGTCTGTTGG		57	8260194	8260212	CAGCGTGATGTTCTTATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Dip-C	FBgn0000455	FBtr0082597	1	1	1	60	3R	8238219	8238237	ACATAACCTGCACATTCCC		59	8238177	8238197	TTGTAGATGAACTTCTGGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5167	FBgn0038038	FBtr0082583	3	1	1	61	3R	8233260	8233278	CCTACATGACGTATCCCTC		58	8233303	8233321	AATGATAGAGGCGAAGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4066	FBgn0038011	FBtr0082566	3	1	1	60	3R	8138697	8138718	TAATACTGAAACCTATCCGACC		59	8138736	8138757	TTGGTTGATATCTTCTATGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpr17	FBgn0051361	FBtr0082542	3	1	2	138	3R	7922730	7932871	TTGGGATACAAGTAGTCACC		58	7932972	7932990	ATTGGACTATCTGGCAGAG		58	NA	
Drosophila melanogaster	50	Ect3	FBgn0037977	FBtr0082487	3	1	1	92	3R	7827144	7827218	GGTGACAACCTATGTGGAG		59	7827273	7827292	AGGCGTATAAAGTGTTCCAG		59	NA	
Drosophila melanogaster	50	glo	FBgn0037954	FBtr0089917,FBtr0089919	3	2	3	82	3R	7642968	7642986	TTTGTTCAGTTCGAAAGCC		58	7642468	7642923	ATCTCAATATACCTGTGCCC		58	NA	
Drosophila melanogaster	50	CG32852	FBgn0052852	FBtr0082449	3	1	1	63	3R	7468092	7468110	GCTACAGCAAACCAAAGAC		59	7468047	7468065	CTGCCCGTTCTTACTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18764	FBgn0042205	FBtr0082417	2	1	1	105	3R	7453761	7453852	CTCATCCACGAAAGGACTC		59	7453921	7453939	TATGGATTAGTTCGTGCCG		59	NA	
Drosophila melanogaster	50	CG6744	FBgn0037901	FBtr0082402	2	1	1	116	3R	7259979	7259998	CAACATCTCGGATCTAAGGG		59	7259675	7259900	GATTGGACTCGTTTGAGCT		59	NA	
Drosophila melanogaster	50	CG14681	FBgn0037820	FBtr0100117	2	1	2	299	3R	6515461	6515479	CTTTAGCTACGACGGAGAG		59	6516220	6516238	GCGTTCTTCTTTACCTGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12592	FBgn0037811	FBtr0082233	2	1	1	248	3R	6165649	6165667	GAAGAAGGTAATTCAGCGC		58	6165943	6165961	CTCATCGGAACTCTTTAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG12814	FBgn0037796	FBtr0082182,FBtr0110786	3	2	2	97	3R	5999289	5999307	CTCAAGTTCCTGGAGAACG		59	5999145	5999228	CCATAGGTATCGTTTGGCT		59	NA	
Drosophila melanogaster	50	CG12814	FBgn0037796	FBtr0082182,FBtr0110786	1	2	2	80	3R	5998355	5998373	CTTCCTGATCATGTTGCTG		58	5998140	5998314	TTCTCGATGATCTCTGTATTGG		59	NA	
Drosophila melanogaster	50	CG16790	FBgn0037713	FBtr0082112	3	1	1	91	3R	5395400	5395418	CGATGAATTCTCCCGATCC		59	5395266	5395284	CCTCATTCGTGTAGATCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8199	FBgn0037709	FBtr0082067	1	1	1	97	3R	5382485	5382619	CTCTTCTGTCGAAACAACG		58	5382680	5382698	ATTCCATAGCCCATAGGTC		58	NA	
Drosophila melanogaster	50	CG16779	FBgn0037698	FBtr0082125	1	1	1	80	3R	5298175	5298195	AGTTCCTACAAGATCAACACC		59	5298050	5298134	GGCACTATTTAGCAATTGCA		59	NA	
Drosophila melanogaster	50	Ada	FBgn0037661	FBtr0081971	1	1	1	60	3R	4891302	4891321	CGTGATCGATGCAATTAAGG		59	4891342	4891362	CAGTAGCTTGACTGTTATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11984	FBgn0037655	FBtr0082008,FBtr0082009,FBtr0082007	1	3	3	162	3R	4837857	4837875	CATTGCGGAACTGTTATCG		59	4837618	4837636	TGTTGAGACTATGGGATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9801	FBgn0037623	FBtr0081945,FBtr0081944,FBtr0081946	2	3	3	110	3R	4564427	4564514	TAAATATCTGGAGGGCCGA		59	4564335	4564353	CCAGCTTCGTATGTATCCA		58	NA	
Drosophila melanogaster	50	CG11737	FBgn0037592	FBtr0081869	2	1	1	81	3R	4346201	4346220	AGAAGATGATCTTCAACCGT		58	4346263	4346336	CAGGACACCGACTTATAGAG		58	NA	
Drosophila melanogaster	50	Poxm	FBgn0003129	FBtr0111026	2	1	1	116	3R	4146356	4146374	TACATCAGGGAACTGAAGC		58	4146258	4146276	CGATATGGAGCTCACACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tom34	FBgn0010812	FBtr0081788	2	1	1	100	3R	3860512	3860530	GATATGGAATCCAAGGTGC		57	3860594	3860671	TGCAGTATTCCTTCTCTGG		58	NA	
Drosophila melanogaster	50	Taf1	FBgn0010355	FBtr0081686,FBtr0081684	2	2	3	157	3R	2480377	2480939	CAGATGGCAGATGAATCCA		59	2481058	2481078	TTGTAAGGCCCATTATCATCC		59	NA	
Drosophila melanogaster	50	CG15186	FBgn0037448	FBtr0081674,FBtr0081673,FBtr0081672	2	3	3	97	3R	2319011	2319029	AGTTAACCAGATCCCTGGA		59	2319089	2319280	CAACTCGTCCATATTTGCAG		59	NA	
Drosophila melanogaster	50	CG17917	FBgn0037431	FBtr0081709	3	1	1	68	3R	2167822	2167841	GATGTAATACACATCGGACC		57	2168072	2168090	ACAATGTGCTGCTAAATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NPFR1	FBgn0037408	FBtr0078590	1	1	1	92	3R	2018052	2018070	ACACCCTGGTTGTTATAGC		59	2018126	2018206	AAAGTAGGTCCGATATGGC		58	NA	
Drosophila melanogaster	50	Obp83cd	FBgn0046878	FBtr0078584	1	1	1	149	3R	1934343	1934999	CATCACCAACATGGAAAGC		59	1935112	1935130	TTGACAGGATAGTAGGCGA		59	NA	
Drosophila melanogaster	50	CG14676	FBgn0037388	FBtr0078645	1	1	1	60	3R	1673551	1673569	TTCAAGTCGATCCTCATCC		58	1673593	1673611	ACTCTCCTATCTCCATGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha26	FBgn0015324	FBtr0078701,FBtr0078700	1	2	2	106	3R	1418407	1418428	CTCAAGATCATGGAATACTACG		58	1418495	1418591	ACTTTCAGCACCTTCAGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CRMP	FBgn0023023	FBtr0089685,FBtr0089686	3	2	4	87	3R	1402974	1403325	CTGGCTTATGACGATTTGC		59	1403376	1403394	TGGTAAAGTCACCCTTTCC		59	NA	
Drosophila melanogaster	50	CG34112	FBgn0086608	FBtr0110805	3	1	1	65	3R	219617	219635	GTTCGAAGAACAAGAAGCG		59	219570	219588	ATCCTGATCCAGATCCTCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40057	FBgn0058057	FBtr0111159	2	1	2	125	3L	24518909	24518930	CGAATGCAATGGATATGATGTC		59	24518394	24518823	GATCTATGAGTGTGGCGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32230	FBgn0052230	FBtr0070041,FBtr0070040	1	2	2	99	3L	23332708	23332726	TAATCCCGATGTCACTTGG		59	23334565	23334583	GGAATAATCCCTCACAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mes2	FBgn0037207	FBtr0078563,FBtr0078561	2	2	3	90	3L	22939627	22939645	TATGAGGCCATGGATTTCC		59	22943660	22943678	TATGGCCATAGGTTGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12377	FBgn0037168	FBtr0078545	2	1	1	187	3L	22497198	22497216	TAGGCATACACATTCGACC		59	22496814	22496832	CTTGTTATTCAGGCTTCGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11449	FBgn0037162	FBtr0078503	3	1	1	79	3L	22447943	22447962	AAAGGAGTCCGTGTTAAGTC		59	22448004	22448022	GAATCATGCGGTTGATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SAK	FBgn0026371	FBtr0078387	2	1	1	91	3L	21507766	21507849	ATTTGCTAGCAGTGACTCC		59	21507693	21507711	ATTCCTCCCGTATTTGAGG		58	NA	
Drosophila melanogaster	50	CG12983	FBgn0037040	FBtr0078332	2	1	4	95	3L	20959003	20959238	GCTGGATAAGGAACAAGGA		58	20958926	20958946	GAATGGGTACATCCTGTAGTC		59	NA	
Drosophila melanogaster	50	obst-F	FBgn0036947	FBtr0074860	1	1	1	60	3L	20193912	20193931	GAAACCACAATGAAAGTTCC		57	20193871	20193891	CGATATAGCAAACGGTTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075013	1	1	11	180	3L	19311973	19311991	CCAACAAACTGAACAGTCG		59	19303883	19306260	TTATATCCGACCTTCTGGC		58	NA	
Drosophila melanogaster	50	nes	FBgn0026630	FBtr0075021,FBtr0075020,FBtr0075019	2	3	3	86	3L	19251647	19251665	ATACATGGTTGTGAGCACC		59	19251406	19251424	GAGTTGTTCAGAATGTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18135	FBgn0036837	FBtr0075044,FBtr0075043,FBtr0075042,FBtr0075045	1	4	4	60	3L	18984759	18984777	CAGACATGATCGAGTTGGA		59	18984717	18984735	TCGTGATAAATCACAGGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4174	FBgn0036793	FBtr0100567,FBtr0075111	2	2	3	255	3L	18594637	18594655	CCTATGCCATGACTGAAGG		59	18594289	18594370	TCGAAATAGTGACCAAGTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	term	FBgn0003683	FBtr0075112	3	1	1	206	3L	18586680	18586698	CCATAATCTCCAGCTTCGT		59	18586492	18586511	TAATATCCATAACGGCCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14586	FBgn0036758	FBtr0075165	2	1	1	80	3L	17811380	17811466	CGAACTCATCAAACTAAGTGAG		59	17811321	17811339	TTTGTCTCCATCCAAGACC		59	NA	
Drosophila melanogaster	50	CG33052	FBgn0053052	FBtr0075229	2	1	1	177	3L	17421026	17421044	AAGCTGGAAAGTGATCTGG		59	17420810	17420828	ATAGATGCTCTGTGAGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6512	FBgn0036702	FBtr0075251,FBtr0075252	3	2	2	82	3L	17233768	17233786	CAATGAGATTGGTGTGGGT		59	17233650	17233669	TCAGGAAGTTAACGAACTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6652	FBgn0036687	FBtr0075291,FBtr0075292	1	2	2	80	3L	17014033	17014052	CCCTAGAGGAATCAATGGAG		58	17013905	17013992	GTACACTAATGTCCTCATCGT		59	NA	
Drosophila melanogaster	50	zetaCOP	FBgn0040512	FBtr0075352,FBtr0075353,FBtr0075351	1	3	3	111	3L	16666237	16666255	TTCCATTAGCCTGATCCTC		58	16665632	16666162	ATCCAGAATAATGCCTCCG		59	NA	
Drosophila melanogaster	50	Syx8	FBgn0036643	FBtr0075365	2	1	1	64	3L	16579404	16579422	AGCATTGGACAGGTTAACC		59	16579358	16579376	AACAAGGCTATGATGACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7945	FBgn0036505	FBtr0075600	2	1	3	127	3L	15515670	15516075	CTGGACAGACCATTTAACG		58	15515504	15515523	ATGGACATCAGAAGGTAGTC		58	NA	
Drosophila melanogaster	50	CG9628	FBgn0036433	FBtr0075678,FBtr0075677	1	2	2	80	3L	14620524	14620542	TTGCTATGTGACCTTTGGA		58	14620586	14620664	CATGGAGTCAAATCACCGA		59	NA	
Drosophila melanogaster	50	Sox21a	FBgn0036411	FBtr0075748	1	1	1	60	3L	14099830	14099848	GAATACTGGAAGCCATCAC		57	14099788	14099806	CATGAAAGCGTTCATTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9007	FBgn0036398	FBtr0075768	2	1	1	61	3L	14003675	14003802	TTTGGTCAGCAAATTGCTC		59	14003825	14003845	CTACTGCTTATAGCAGAGTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	caps	FBgn0023095	FBtr0075832,FBtr0111005,FBtr0075833	1	3	3	87	3L	13222209	13222227	CAAACTAGCCACGAATTGC		59	13231812	13244269	GTTCTGCCGGTATAATCCT		58	NA	InUTR
Drosophila melanogaster	50	CG32103	FBgn0052103	FBtr0075982,FBtr0075984	1	2	3	80	3L	12406593	12406611	GATCGATATCCACGACCTG		59	12405540	12406550	GACTGCTGAAGGAATTTCTC		58	NA	
Drosophila melanogaster	50	CG5897	FBgn0036220	FBtr0076070	2	1	1	60	3L	11881331	11881351	TTATCAACGGGATAGAGATGG		58	11881291	11881311	ATATCCGTAACAGGTCATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11597	FBgn0036212	FBtr0110780	2	1	2	207	3L	11814813	11814946	CGTTGAAAGCAATTTGTCAG		58	11814625	11814643	AAATGATCAGGTGGCTAGG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG5946	FBgn0036211	FBtr0076079,FBtr0076078	3	2	4	106	3L	11811263	11811281	AAGGACATTCTACTGCGTG		59	11810404	11811193	CTATACTGCCAACCTTCGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	mtTFB1	FBgn0036197	FBtr0076112,FBtr0114551,FBtr0114552	2	3	3	60	3L	11702737	11702756	ACGGACAAGATAGTCAAGTC		59	11702778	11702797	CCACCTCAAGAACTAAATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha16-3	FBgn0028667	FBtr0076090	1	1	1	65	3L	11466706	11466724	ATCATTGCGATCTATGGCC		59	11466752	11466771	GGTATACGAATCCGACAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Elo68beta	FBgn0036128	FBtr0113161,FBtr0113162	3	2	2	78	3L	11094156	11094174	CTTATGTCAAATGGCTGCC		59	11094035	11094053	CTGTACATAATCACGTGCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	l(3)01239	FBgn0010741	FBtr0076238	2	1	1	60	3L	11067089	11067109	CTGTGATAGAAACTCTGGAGG		59	11067049	11067067	CCACCAATTTGACGAAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6404	FBgn0027615	FBtr0076271,FBtr0076272	1	2	2	137	3L	10877848	10877866	CTAAGAAGGGATTCGTCGG		59	10877655	10877673	ACTTGTACGTCTTGACCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Or67d	FBgn0036080	FBtr0076297	2	1	1	111	3L	10267181	10267274	CATCAGCTGTATACTAGAATGC		58	10267343	10267364	AGATGCAAGATATGGTACAGAG		59	NA	
Drosophila melanogaster	50	CG14177	FBgn0036013	FBtr0076378	2	1	1	85	3L	9591186	9591205	TAAGTGAGCATGATTTACGG		57	9591253	9591271	TATAGCCATTCCGTAGACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	phol	FBgn0035997	FBtr0076475	1	1	1	60	3L	9447556	9447574	GAACAGTTGATCTATGCGG		58	9447514	9447532	CGATAAGCTCGATGTTACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bol	FBgn0011206	FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538	3	4	4	131	3L	9101077	9101097	ATATACCCATGGATCAGTTCG		59	9100463	9100724	TGGTGGGTACATTCATTGG		59	NA	
Drosophila melanogaster	50	smg	FBgn0016070	FBtr0076549,FBtr0076550,FBtr0076551	2	3	3	133	3L	8986300	8986318	CAGTCAACTCAAGGACCTG		59	8986128	8986204	TCTTACCATTCCATCTTGGC		59	NA	
Drosophila melanogaster	50	Cpr66Cb	FBgn0035875	FBtr0076601	3	1	1	196	3L	8330741	8330759	ACCAGTACTACGAGGAGAG		59	8330919	8331020	GGGAGGAGCATAGTAATCC		58	NA	
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780	1	8	8	125	3L	7811265	7811285	GATGACAAATACAAGGAGGAG		58	7810754	7811178	GTCGGCATATTGTGTTACC		58	NA	
Drosophila melanogaster	50	CG14838	FBgn0035799	FBtr0076801	3	1	1	147	3L	7579460	7579478	CATTATAGAGGCAAAGCGG		58	7579586	7579661	CTTCTTACCTTTGATCTCTTCG		58	NA	
Drosophila melanogaster	50	CG7548	FBgn0035792	FBtr0076830	3	1	1	109	3L	7499254	7499272	CTCCAGCTTGCTTCTACTC		59	7499163	7499181	CTACATTCTGTTGGGTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8560	FBgn0035781	FBtr0076868	1	1	1	116	3L	7395839	7395857	CTACCTGCTGTATCCTTGG		59	7395674	7395692	GTATACTTCGTTCCGGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8519	FBgn0035711	FBtr0076942	2	1	1	107	3L	6701486	6701505	GGAGTACGATCATCAGACTG		59	6701575	6701653	TATTCGTCTTCAGCCTTGG		59	NA	
Drosophila melanogaster	50	CG18769	FBgn0042185	FBtr0076973,FBtr0076970,FBtr0076972,FBtr0076971	2	4	6	163	3L	6544995	6545013	CACCACCCATAGAAGTCTC		59	6555511	6583715	CATAGATGTCTTCTCCCGTC		59	NA	
Drosophila melanogaster	50	D19A	FBgn0022935	FBtr0077016	3	1	1	60	3L	6180791	6180810	GTATCCTTGCAATATCTGCG		58	6180750	6180768	AAGGTGATCCCTTAAAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myt1	FBgn0040298	FBtr0077118	3	1	1	77	3L	5771081	5771099	CACAAACCAAGGCAAATCC		59	5770964	5770982	TCGTGTACATGAACGTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11357	FBgn0035558	FBtr0073310,FBtr0113143,FBtr0113142	2	3	3	147	3L	4551802	4551822	CGACGATGTGTTTATGAACAC		59	4551929	4552113	CCATTTGGAACGATATGAACG		59	NA	
Drosophila melanogaster	50	CG15014	FBgn0035532	FBtr0073340	3	1	1	60	3L	4321266	4321287	AATCTTCAGAAGAGTCCAAGTC		59	4321227	4321247	TTGTCATTCTCAGTAGAGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fit1	FBgn0035498	FBtr0073209,FBtr0073210	1	2	2	60	3L	4105445	4105463	AACATCACCAGGATACCAG		58	4105487	4105505	TGAACCTTTGAGGCTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14995	FBgn0035497	FBtr0073272,FBtr0073271	1	2	4	158	3L	4096937	4096957	CCCATGTATAACACCATAACC		58	4095866	4095983	GTAGTATTCCTTCATCGAGTG		57	NA	
Drosophila melanogaster	50	CG1135	FBgn0035489	FBtr0073202	3	1	1	294	3L	4041686	4041763	TTAAGAGCTCGGAACAACC		59	4042020	4042039	CGAATATTACGTTTGTTGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG2162	FBgn0035388	FBtr0072981	1	1	1	80	3L	3039187	3039206	CCAAGTTACTCCAAGAACTG		58	3039248	3039335	TGTGAAAGACCGTATAGTCC		58	NA	
Drosophila melanogaster	50	CG1317	FBgn0035333	FBtr0072901	2	1	1	60	3L	2371547	2371568	CGATCAAGTACATTCATCAGGA		59	2371508	2371526	TATTCCTTGTGCGAGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ACXD	FBgn0040507	FBtr0072874	2	1	1	81	3L	2242202	2242220	GATGATCATAACGTTCGGC		58	2242265	2242344	CCGTTTCCAGTTGTAATCC		58	NA	
Drosophila melanogaster	50	CG1887	FBgn0035290	FBtr0113125,FBtr0072859,FBtr0113124	2	3	3	61	3L	1894438	1894614	AATACAACCGAAACTTGGAG		58	1894396	1894417	CTTTAAGATTCAGCTGTATCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Ptp61F	FBgn0003138	FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718	3	4	4	145	3L	1346061	1346079	AAGAAACAGATCAAGTGCC		57	1345856	1345953	TCGGTTAATTTGAACCATCG		58	NA	
Drosophila melanogaster	50	CG2211	FBgn0035211	FBtr0072723	1	1	1	176	3L	1333837	1333856	AATCTTACTCAAGGAGTGCC		59	1333624	1333700	GTAATCAAGATGCATCACAGC		59	NA	
Drosophila melanogaster	50	CG13908	FBgn0035178	FBtr0113121	1	1	2	201	3L	990851	990869	TATCATCACGCCAACTCAC		59	991034	991103	GTAGGGTGAATTTCTTGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Glut1	FBgn0025593	FBtr0112910	3	1	6	167	3L	982069	982087	CCAAGTTCGCTACGATAGG		59	982287	983843	CAAAGAACTCCTTGATCAGGA		59	NA	
Drosophila melanogaster	50	RabX6	FBgn0035155	FBtr0072577	3	1	1	60	3L	691085	691103	TGGACATTGTGACCTATGC		59	691127	691145	AGATCGCTCTTATTGCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kaz1-ORFB	FBgn0063923	FBtr0072488,FBtr0100851,FBtr0072493,FBtr0072490	1	4	6	110	3L	217695	217713	AGTACAATCCAATCTGCGG		59	217866	217884	GACAAATTCCCTTGTGCAC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	snoRNA:Psi18S-841d	FBgn0083016	FBtr0113524	3	1	1	62	2R	17218438	17218456	ACTAGCTTCGTGTGATGAC		59	17218481	17218500	ACATGGATAAGACGCATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-841b	FBgn0083018	FBtr0113520	3	1	1	96	2R	17217783	17217801	CAAATGCACTCTGTGTCAC		59	17217858	17217879	GCACTAATTGCATGGATAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL19	FBgn0002607	FBtr0072406,FBtr0072405	1	2	2	62	2R	20856642	20856660	GATCGCTAACACAAACTCG		58	20856532	20856550	TTGATGATCAGACCATCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5594	FBgn0025698	FBtr0072137,FBtr0072139	2	2	4	97	2R	19810464	19810482	CTTATACCTACGAGCGGAC		59	19810543	19811533	TGTTTGAACCACTTTGGAG		58	NA	
Drosophila melanogaster	50	CG5597	FBgn0034920	FBtr0072131	1	1	1	80	2R	19775913	19776011	CCATCACGATAATATCCAACG		58	19776053	19776071	CATCGAAGTATCCCTCCTC		58	NA	
Drosophila melanogaster	50	CG4091	FBgn0034894	FBtr0072097	1	1	3	259	2R	19588108	19588336	TGGAACTTGGAAGTCATGG		59	19587867	19587885	CTGAACTGATTGTTCCGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG17664	FBgn0034883	FBtr0072107,FBtr0072108	1	2	2	64	2R	19491491	19491509	ATGACCACTGGATCTACTG		58	19491445	19491463	CTTGTAGATCACCGAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	apt	FBgn0015903	FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067	1	4	5	115	2R	19468991	19484433	GGTCAACAAACAGTATTCGG		59	19484508	19484591	GTGTCATTTCCGTCTTTATGTC		59	NA	
Drosophila melanogaster	50	CG3085	FBgn0034816	FBtr0071963	2	1	1	60	2R	18963471	18963546	GAGAAATCCCAAGAACTCC		57	18963567	18963588	CTTTATGTTCTTCACGTTCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG34369	FBgn0085398	FBtr0112594	2	1	1	100	2R	17855780	17855861	AATTCCTTCGACTACTGGC		59	17855924	17855943	ATAATCTGCGCGTAGATCTC		59	NA	
Drosophila melanogaster	50	CG4372	FBgn0034665	FBtr0071738	2	1	1	60	2R	17726169	17726187	AAGGATCAAATTGTTCGGC		58	17726127	17726146	CCACGTACTTATCAAGAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30391	FBgn0050391	FBtr0071621	1	1	1	60	2R	17153487	17153505	CTACAAGATCACCATGCAG		57	17153445	17153465	TTCGATATCATAGATCTGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4266	FBgn0034598	FBtr0113100	1	1	2	151	2R	17054801	17054819	AATATGTCAAGAGCTCGCA		59	17054539	17054687	CTTCTTCTCGTCTAACAGGT		58	NA	
Drosophila melanogaster	50	CG3295	FBgn0034573	FBtr0071547	2	1	1	61	2R	16903819	16903837	CTTACAAGCACTTCTTGGG		58	16903776	16903797	GTCTTTGAGGAATATGAACGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15651	FBgn0034567	FBtr0071553	3	1	1	104	2R	16872814	16872832	GAAATGCTCTACATGCAGG		58	16872671	16872689	CTGTTTGGTGTGAAAGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11200	FBgn0034500	FBtr0086300,FBtr0086299	3	2	2	72	2R	16193965	16193983	TATCAGTACCTGGGAATCG		57	16193848	16193930	TATAAAGTGCCACTCGATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11041	FBgn0034481	FBtr0086310	1	1	1	80	2R	16034203	16034580	TGAATCAGCTCATGGTAGC		59	16034624	16034642	CATTCCCATCCATATCCGA		58	NA	
Drosophila melanogaster	50	CG15099	FBgn0034400	FBtr0086628	3	1	1	81	2R	14731163	14731241	GGATAAAGATATCAGTGCCTC		57	14731102	14731120	CTTGAGCTTCTTGATGCTC		58	NA	
Drosophila melanogaster	50	Mctp	FBgn0034389	FBtr0110970,FBtr0110971	2	2	2	107	2R	14660396	14660473	TATGTCCAGAGCTGTTTCG		59	14660543	14660562	AACTAGAGGTACTGTCTCCA		58	NA	
Drosophila melanogaster	50	CG5482	FBgn0034368	FBtr0086661	3	1	1	105	2R	14518209	14518227	CAAGATTGCCGCTTATGAC		59	14518062	14518140	GCCCTCCAATATTCTTCCT		58	NA	
Drosophila melanogaster	50	CG30116	FBgn0028496	FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718	2	4	4	80	2R	14363162	14363624	GATTATCGCCTTATGAACGTG		59	14363102	14363120	CGATTGAAAGGCTTGTTCC		59	NA	
Drosophila melanogaster	50	CG5174	FBgn0034345	FBtr0086685,FBtr0086689,FBtr0086687	3	3	7	135	2R	14311982	14312385	AGAGCACTGTATACCAACG		59	14312484	14312502	ATAGAACGCATCGATTCGG		59	NA	
Drosophila melanogaster	50	GstE6	FBgn0063494	FBtr0086674	1	1	1	60	2R	14293755	14293776	CCATTATTGCCTATTTGGTCTC		59	14293797	14293815	GGATCTTTCGGGTATAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Idgf5	FBgn0064237	FBtr0086668	1	1	1	149	2R	14281820	14281838	GTTTAGTTCCTCATCGGTG		57	14281951	14282035	TCAATAAAGAGTTCCGCTG		57	NA	Nonspecific
Drosophila melanogaster	50	sbb	FBgn0010575	FBtr0086765	2	1	3	85	2R	14170887	14170905	CAACTAATGGGTGGATTGC		58	14170734	14170838	AGTACACCCGCTTTAAGTG		59	NA	
Drosophila melanogaster	50	pen-2	FBgn0053198	FBtr0089842	2	1	1	61	2R	14165339	14165358	GAGCAGAGCCAAATAAAGAG		58	14165456	14165474	ATCAGCCAGAATAGAGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14483	FBgn0034248	FBtr0086902	3	1	1	139	2R	13473413	13473431	AGAAGCGGGAACTTTATCC		59	13473292	13473312	TATCTACTTCTTCTGCTTGCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14482	FBgn0034245	FBtr0086905	3	1	1	67	2R	13460016	13460162	TTCCTTCATCCGATCTGGA		59	13459967	13459985	AGTCGGTGTAGTAAAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4853	FBgn0034230	FBtr0086938,FBtr0086939	2	2	2	81	2R	13403814	13403895	CGGAAATATTAAAGTTGGGC		57	13403939	13403957	TTAAAGCATTCCAGAGCTG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	qkr54B	FBgn0022987	FBtr0086925,FBtr0086923	3	2	3	81	2R	13359115	13359204	CATCACAGCTATAGGAGCTC		59	13359245	13359266	CCAATATGGACATCACTTTCTG		59	NA	
Drosophila melanogaster	50	CG34460	FBgn0085489	FBtr0112766	1	1	1	80	2R	12714656	12714790	CATCCACTACTGTCAGATACC		59	12714831	12714850	CATTGTGGAAAGTCAACGTC		59	NA	
Drosophila melanogaster	50	fidipidine	FBgn0025519	FBtr0087185	3	1	1	95	2R	12151032	12151116	AAAGATGAGCTCGATCTGG		59	12150955	12150974	TGTAGGATCGAGATCAATGC		59	NA	
Drosophila melanogaster	50	Cdk5	FBgn0013762	FBtr0087350	2	1	1	132	2R	11457930	11457948	GATGAAGATCTTCCGTGTG		57	11457754	11457772	GTTTAGCCTAGGTACCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	GalNAc-T1	FBgn0034025	FBtr0087332,FBtr0087331	1	2	2	60	2R	11401756	11401906	GACTTCCATCCTTACAAATTCC		59	11401927	11401945	TGCGGGCAGTATTAATACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Hr51	FBgn0034012	FBtr0114456	3	1	1	142	2R	11225704	11225910	ATGACAATGATGACGACTC		57	11226016	11226034	TGTCTCGTAAACTGTTTCG		57	NA	
Drosophila melanogaster	50	AGO1	FBgn0026611	FBtr0087613,FBtr0087612,FBtr0087614	2	3	3	103	2R	9835755	9835774	GTATCAGCTATGCCATACGT		59	9835605	9835689	CCAGATGATATCTGGCACG		59	NA	
Drosophila melanogaster	50	CG33156	FBgn0053156	FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681	3	5	5	83	2R	9436514	9436532	TTATGGTGACTCCCATCTG		58	9436390	9436470	ATACTGATATCTTCAGCTCCAC		59	NA	
Drosophila melanogaster	50	CG33470	FBgn0053470	FBtr0087657,FBtr0087656	3	2	2	65	2R	9299575	9299593	CAACACGTTTGTTAACCGA		58	9299681	9299699	AAATTGGGACCACTGATGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG4616	FBgn0033806	FBtr0087737,FBtr0087736	3	2	2	81	2R	9095634	9095654	CATCACAGGAATCAAGAAAGC		59	9095696	9095774	TTGGCAATTGTATCTTGCTG		59	NA	
Drosophila melanogaster	50	CG33007	FBgn0053007	FBtr0087778	2	1	1	60	2R	9035421	9035440	GACACTAACATCTCGTTGTC		58	9035380	9035399	TTTCCTGAGGACTATAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sca	FBgn0003326	FBtr0087855,FBtr0087856	1	2	2	158	2R	8687287	8687506	AAGAATAAGCTCACCCACC		59	8687628	8687646	GATAATGGCCTCGTACTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG30203	FBgn0050203	FBtr0087894	3	1	1	81	2R	8201008	8201028	CATATAAGCAAACAGGAGGTG		58	8201071	8201179	TAGGATCTACCTCCTGCTG		59	NA	
Drosophila melanogaster	50	CG9027	FBgn0033631	FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897	1	4	4	188	2R	7269617	7269636	GATAATACCCAGGTCAAGGG		59	7269385	7269466	ACCGTGATCAACCTTATCG		59	NA	
Drosophila melanogaster	50	Gr47b	FBgn0041241	FBtr0088127	3	1	1	114	2R	7250563	7250644	ATTTACCTGGTGTACAACGG		59	7250721	7250739	CAATGTCCACATCTTTGCC		59	NA	
Drosophila melanogaster	50	kappaTry	FBgn0043471	FBtr0088165	2	1	1	60	2R	7225815	7225835	GATATAGGTGTCCTCCTTCTG		58	7225775	7225793	TTGAGCTTATTCCGAGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shn	FBgn0003396	FBtr0088099,FBtr0088100,FBtr0088101,FBtr0088098	3	4	4	116	2R	7101598	7101616	TATGGACTTTGACCAGCAG		59	7101693	7101777	TCATCCGTATCACTACTTTCAG		59	NA	
Drosophila melanogaster	50	CG33476	FBgn0053476	FBtr0088319	1	1	1	60	2R	6297728	6297746	GCCAATTCCTGATGAATCC		58	6297686	6297704	ACCAGCCGTTTGTATACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414	1	10	10	69	2R	5991854	5991872	TGTCGACAGTCGATAAGGA		59	5991904	5992230	TCATCGTAACGTTCTGACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	mRpL42	FBgn0033480	FBtr0088403	1	1	1	151	2R	5954331	5954350	CGTTTATACGGAGGATTTCG		58	5954464	5954482	GTGTTCTCGTAGGGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12128	FBgn0033473	FBtr0088394	3	1	2	81	2R	5915137	5915219	AACCTCAAAGTGAGAGCTG		59	5915263	5915282	CAATAAACACCTGTTTCCCG		59	NA	
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	1	9	9	87	2R	5738879	5738966	CCGTTAAGGAGATCCATGTC		59	5738811	5738829	ATATCGATGACAGTTCCGG		58	NA	
Drosophila melanogaster	50	CG8635	FBgn0033317	FBtr0088727	2	1	1	130	2R	4518513	4518590	CCACCACGGATATTATTTGC		59	4518402	4518420	CTTCAGCACATATCCAGCT		59	NA	
Drosophila melanogaster	50	Rs1	FBgn0021995	FBtr0088788	1	1	1	104	2R	4053428	4053632	TCCATTGAGGTTCTCATTCTG		59	4053698	4053716	GGTCTGACGTGTCTTACAG		59	NA	
Drosophila melanogaster	50	CG11508	FBgn0033267	FBtr0088817,FBtr0114490,FBtr0088818	2	3	3	60	2R	4017214	4017232	GTACGTTTAATCGCAGGAC		58	4017172	4017192	TTCACGATGAAGCTATAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tor	FBgn0003733	FBtr0112837	3	1	3	85	2R	3592968	3592987	CAGAAAGGCTGAAACAACTG		59	3590738	3592923	TGATATTCGTAGCCCAATACTG		59	NA	
Drosophila melanogaster	50	CG11113	FBgn0033165	FBtr0113048	1	1	1	60	2R	3289659	3289678	AAACTACATAATCCTGCCGA		58	3289700	3289719	TTCATCTGCAAAGATGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111082	2	1	60	88	2R	3247291	3249236	ATTGGTCATCACAGAACCC		59	3247221	3247240	TATCCTCCTGCCTAATCCTC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111101	3	1	60	125	2R	3219876	3229224	TGAAAGTTAATGTACCTCCCAG		59	3219772	3219792	CTTTCTTCCATGTAACTTGGG		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111064,FBtr0111057,FBtr0111100	3	3	60	85	2R	3247004	3247022	AGCACCTTAAGGGAAAGAG		58	3236471	3246958	CTTGTACCATCTAAAGAAAGGC		59	NA	
Drosophila melanogaster	50	CG17082	FBgn0039994	FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289	3	6	6	91	2R	644085	644172	TTCTATTGGTCGATCAAAGGAG		59	644224	644242	CATTCTCTGAGGCTGACAG		59	NA	
Drosophila melanogaster	50	Stlk	FBgn0046692	FBtr0111111	2	1	2	176	2R	448287	450361	AAATCAAGGTTCCCTATCCC		59	450499	450518	CGACATTGCTTAAGAAACGA		58	NA	
Drosophila melanogaster	50	Cyp6t2Psi	FBgn0041336	FBtr0081529	2	1	1	60	2L	21283849	21283867	ATAAGACTTGGTGGGAGAC		58	21283807	21283828	GTCAAATTCTTTCCAGAAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snRNA:U5:38ABa	FBgn0043022	FBtr0081315	3	1	1	63	2L	19811993	19812014	GAGAGGAACACTCTAATGAGTC		59	19811951	19811972	CCCAACTAAATATTTAGCCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11629	FBgn0032965	FBtr0085950	1	1	1	60	2L	21897010	21897028	ACACAGGGAAATATCCGTC		59	21896968	21896986	TAGCTTTCTGCATCATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2225	FBgn0032957	FBtr0085918,FBtr0085915	2	2	5	117	2L	21670616	21670636	GAACTTACACCCGTTAAACAG		59	21670466	21670537	CTATTAACGATCGCACCGT		59	NA	
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081442,FBtr0081441,FBtr0081444,FBtr0081447	1	4	8	100	2L	20876928	20876946	TCCAAATGATGTCCCACAC		59	20874424	20875092	CGTGAACAGAAATTGTCTATCC		59	NA	
Drosophila melanogaster	50	CG15475	FBgn0032867	FBtr0081381	2	1	1	63	2L	20615083	20615101	AAGGATCTTAAAGAGGCGC		59	20615128	20615146	TGGTCTCTTTAACATGCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12617	FBgn0040996	FBtr0081351	3	1	1	61	2L	20294907	20294925	AAACATCTGAACGAGATGG		57	20294950	20294968	GGAATATAGTTCCGACCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10462	FBgn0032815	FBtr0100351,FBtr0100352,FBtr0081325	2	3	3	91	2L	19733222	19733240	GACAAACGTTTCCGAACTC		59	19733056	19733168	TCTAACGAGCATATCTTGCA		58	NA	
Drosophila melanogaster	50	CG10186	FBgn0032797	FBtr0081280,FBtr0081281	2	2	2	81	2L	19511020	19511040	TTAGTTTCTACAACGACCTGG		59	19510897	19510980	TCCATACATCTCGATATGATGG		59	NA	
Drosophila melanogaster	50	CG17349	FBgn0032771	FBtr0081198	3	1	1	105	2L	19370705	19370723	AGTTGTTGTACCTCAGGTC		58	19370857	19370934	ATGTCGATCTTTGGAGGAG		58	NA	Nonspecific
Drosophila melanogaster	50	l(2)37Cb	FBgn0086444	FBtr0081163	3	1	1	116	2L	19126465	19126483	AGTACAAGAAGCAACTGCT		59	19126307	19126385	CGTATTCAGATCGCTCTCC		59	NA	
Drosophila melanogaster	50	CG10383	FBgn0032699	FBtr0089628	3	1	1	117	2L	18692897	18692976	ATCCCATTGAGGACATTCAC		59	18692799	18692819	GGATCCTTTGTAATATGGTGC		58	NA	
Drosophila melanogaster	50	qua	FBgn0003187	FBtr0080997,FBtr0080996	2	2	2	97	2L	17489499	17489519	TCGTATCTGGGAAACATATCC		59	17489361	17489440	GATCGAACATCGTAACCCT		59	NA	
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0080978,FBtr0080977	1	2	6	143	2L	17394476	17398601	CAATTCGGCTTATACAGATCTC		58	17398705	17398860	TAATCATAAGATGCGCGAC		57	NA	
Drosophila melanogaster	50	CG15133	FBgn0032619	FBtr0080948	3	1	1	81	2L	16895765	16895783	TCACCACCTAAGACTAGCA		59	16895826	16895906	ACATTTCATCCGGTATCTCTG		59	NA	
Drosophila melanogaster	50	CG33552	FBgn0053552	FBtr0091522	2	1	1	60	2L	16682968	16682988	GCATACTACATTACTTGCAGC		59	16683010	16683028	CGGATCATCTGTGATTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	chif	FBgn0000307	FBtr0080838,FBtr0080839	2	2	3	60	2L	16345234	16345254	CACTACCACAACTACTACGAC		59	16345194	16345212	TTCATCGTCTTTGCTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syx5	FBgn0011708	FBtr0080831	2	1	2	115	2L	16308277	16308295	TATTGGCAAGAACATAGCC		57	16308442	16308460	TGATATAGGTCAGCTCCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Gli	FBgn0001987	FBtr0080769,FBtr0080766,FBtr0080765,FBtr0080768,FBtr0080767	1	5	5	90	2L	15758069	15758149	TAGATATGGCAATCCGACG		59	15757997	15758017	GGTATTGATGTTCAAGTACCG		58	NA	
Drosophila melanogaster	50	lace	FBgn0002524	FBtr0080738	1	1	1	106	2L	15503218	15503302	GGATCCAAGAAACTGATTGAC		58	15503370	15503388	GTCTTCATGGAGGTAAGGA		57	NA	
Drosophila melanogaster	50	CG4168	FBgn0028888	FBtr0080716	3	1	1	219	2L	15176145	15176165	GATTTGACAACTGTAACTGGG		59	15171527	15172142	CTGTGCATGAACTCAAACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	cenG1A	FBgn0028509	FBtr0080548,FBtr0080546,FBtr0080547	3	3	3	150	2L	13896605	13896623	CAGGAGATCTTCAAGAGCC		59	13896737	13896819	TAGCCCATTCAGGATTTGG		59	NA	
Drosophila melanogaster	50	CG6043	FBgn0032497	FBtr0114471	2	1	5	150	2L	13274368	13276257	ACTTTGGTGGTAATGGAGTC		59	13276455	13276474	AATGATCGACTGGGTATAGC		59	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020	2	17	17	87	2L	12723992	12724013	CAAGACCTATCAGATCAGACAG		59	12724061	12724214	TTTGAGCACCTTAATGCCA		59	NA	
Drosophila melanogaster	50	Oatp33Eb	FBgn0032435	FBtr0080370	1	1	1	96	2L	12448982	12449601	TCCACTGATTGTGGATTGG		59	12449661	12449679	GATGGGATGATAGACGTCC		59	NA	
Drosophila melanogaster	50	Patsas	FBgn0029137	FBtr0080363,FBtr0080362	1	2	2	60	2L	12101337	12101356	ATATCAGAATCCCTTCTCGC		59	12101296	12101314	CAGGCAGACAAAGAATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	crol	FBgn0020309	FBtr0080262	3	1	4	149	2L	11797737	11798678	CTTCATCTGCAAAGTTCCC		58	11797606	11797624	GCATTATGTGAGATGAGCG		58	NA	
Drosophila melanogaster	50	Mst33A	FBgn0028412	FBtr0080271,FBtr0080272	1	2	2	60	2L	11585776	11585795	GGGATCTCTATCGGAATGTG		59	11585735	11585755	TCAACTCTGGATACTTTGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17139	FBgn0032307	FBtr0100836	1	1	1	106	2L	10844747	10844822	GAAGTCGGACTGAAATTTGAG		59	10844661	10844679	ACGTTTCCATACAGGTTGG		59	NA	Nonspecific
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0100487,FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100489,FBtr0100486	1	8	10	80	2L	10806031	10806051	GCTACAGAAGGATCAAATCCT		59	10805730	10805989	TCCTGCACATATGTCTTCG		59	NA	
Drosophila melanogaster	50	CG6444	FBgn0032293	FBtr0080112	2	1	1	68	2L	10733154	10733173	CTACTAAAGCATAGCAACGG		58	10733204	10733222	TTAGGAGTTGTTGTCCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS7	FBgn0032236	FBtr0080007	2	1	1	71	2L	10386949	10386967	GTCCAAGCTTTACCATGTG		58	10387002	10387020	GTATCGTCGTGAAAGATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4995	FBgn0032219	FBtr0079989,FBtr0079990	1	2	3	60	2L	10322825	10323681	CAATGATAAGGATCCCTACCG		59	10323703	10323721	GGCCTTTAGTTGAATGTCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5640	FBgn0032207	FBtr0080077,FBtr0080075,FBtr0080076	2	3	3	80	2L	10275748	10275766	ATGCTTTCCTAGCATATCG		57	10275619	10275705	GATATAAGACGCCGATTGAG		58	NA	
Drosophila melanogaster	50	CG4946	FBgn0032203	FBtr0079983	1	1	1	137	2L	10265650	10265669	CGGAACCATTAGGTATTCCT		58	10265769	10265842	TTGAAGAAGTCCACAACGT		59	NA	
Drosophila melanogaster	50	Dref	FBgn0015664	FBtr0079889	3	1	1	91	2L	9964857	9964936	AGAAGTTGGGTCTGAAACTG		59	9964785	9964803	CTTAAGATCGGACTCCACG		59	NA	
Drosophila melanogaster	50	nAcRalpha-30D	FBgn0032151	FBtr0079913,FBtr0079914,FBtr0079915	3	3	6	135	2L	9807416	9807434	TATACAAATTCGTCGCCGT		59	9802427	9807317	AATTGTAACTCCCAGCGTC		59	NA	
Drosophila melanogaster	50	CG17633	FBgn0032144	FBtr0079868	1	1	1	60	2L	9769242	9769261	CGACTCAATCATGTTCTTGG		58	9769282	9769302	CACGATTATCTGAATATCGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp4e3	FBgn0015035	FBtr0079925	1	1	1	80	2L	9749082	9749163	CAGGCATTCAGAGATATGTG		58	9749021	9749040	TAAACTAAACACGCGATTGG		58	NA	
Drosophila melanogaster	50	gcm	FBgn0014179	FBtr0079855	1	1	1	60	2L	9580641	9580660	AGAGATTCACTACGAAACGG		59	9580600	9580621	CATATCGTAGGAGTACATTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34181	FBgn0085210	FBtr0112374	3	1	1	60	2L	9368048	9368068	TGGCTTTCAGGACTAATTACC		59	9368090	9368108	CTTCAAGGACGTACCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eaat1	FBgn0026439	FBtr0079802,FBtr0079801,FBtr0079800	3	3	3	147	2L	9338300	9338321	AGATCATGTACATATCCTTCCC		58	9338514	9338599	TAAGTAATGGCTCTGGTAGC		58	NA	
Drosophila melanogaster	50	CG9586	FBgn0032101	FBtr0079774	3	1	1	188	2L	9165838	9165956	CTCAATACTCCCAGACTGC		59	9165668	9165686	TTTCCCGATCCTCTTTGTC		59	NA	
Drosophila melanogaster	50	Dh31	FBgn0032048	FBtr0079700,FBtr0079699	2	2	2	72	2L	8493010	8493028	CTCATGGAACTGATGACTC		57	8492792	8492974	TTCGTTTGGAATTCTCCAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Rbsn	FBgn0031991	FBtr0079581	1	1	1	80	2L	8161359	8161378	AATAACATGGCAGCTAACCA		59	8161421	8161504	TTGAAGATCAGACCCTTGG		58	NA	
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567	2	8	9	165	2L	8089727	8105702	CAATCACTTGATAAGCTGGTG		59	8106859	8106877	GAGAAGGTACATCCGTCAC		59	NA	
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567	1	8	9	163	2L	8089727	8105702	CAATCACTTGATAAGCTGGTG		59	8106857	8106875	GAAGGTACATCCGTCACAG		59	NA	
Drosophila melanogaster	50	CG34010	FBgn0054010	FBtr0100065	1	1	1	80	2L	8009951	8009970	TATGGAGAACAATCTCGCTG		59	8009836	8009911	CTACCATGAGGAGATCTTAGAC		58	NA	
Drosophila melanogaster	50	sip2	FBgn0031878	FBtr0079360,FBtr0079357,FBtr0079359,FBtr0079358	1	4	5	85	2L	6961943	6961961	CAATGGAATCGATTCAGCC		58	6961812	6961830	GAGTTCGTTCATCAACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13766	FBgn0031834	FBtr0079330	1	1	1	73	2L	6565805	6565823	GAATTGGCCTTCTATCTGC		58	6565750	6565768	TTGTTCATGTTCTCATCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9536	FBgn0031818	FBtr0079267	2	1	1	166	2L	6475577	6475595	CAGCGTATTGGTTAATCCC		58	6475254	6475447	CCTTCAAGGCAATTTGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ppk7	FBgn0031802	FBtr0079281	2	1	1	88	2L	6353159	6353178	AATGGACCTACTGTTTCCAC		59	6352972	6353051	AGATGAGCAGGTCATTGTG		59	NA	
Drosophila melanogaster	50	Cpr	FBgn0015623	FBtr0079250	2	1	2	98	2L	6342340	6342735	ATTCCATACAACCCACCAC		59	6342796	6342815	CATAGAAGACGACCAGACTG		59	NA	
Drosophila melanogaster	50	CG9135	FBgn0031769	FBtr0079186,FBtr0079185	2	2	2	130	2L	6052013	6052091	AGAAGAGAAGTACCGATATGTG		59	6052182	6052200	ACTTGATGTCTTGGCTGAG		59	NA	
Drosophila melanogaster	50	nompC	FBgn0016920	FBtr0112891	2	1	3	113	2L	5358662	5358681	AATGACACCACTACACTTGG		59	5358754	5358806	GTTAATGGTTTGTTCTCGATGG		59	NA	
Drosophila melanogaster	50	Msp-300	FBgn0053715	FBtr0091707,FBtr0091706,FBtr0091705	2	3	3	89	2L	5155461	5155479	GTTTCTGTGAGAAGACCCT		58	5155532	5155604	CATTGCGGAAATGAACCTC		59	NA	
Drosophila melanogaster	50	CG5828	FBgn0031682	FBtr0079018	2	1	1	67	2L	5094357	5094375	GATTCTAGGCACCAGTGAG		59	5094406	5094424	GATCTGTAAATCCGTAGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3058	FBgn0031601	FBtr0077435	2	1	1	60	2L	4403650	4403668	TGTACGAGTTGTACGATCC		58	4403692	4403710	ATCATGATGTGCTTGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL40	FBgn0003941	FBtr0077470	1	1	1	62	2L	4228204	4228222	CATTCAGAAGGAGTCCACC		59	4228248	4228266	GAGGGCTCAATGATACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lectin-24Db	FBgn0040102	FBtr0077469	1	1	1	60	2L	4188416	4188434	TATCCTTGGAGGAATCAGC		58	4188458	4188476	ATTCGGTCCAGTCTATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Shaw	FBgn0003386	FBtr0089274,FBtr0089275	2	2	2	80	2L	3721575	3721651	GCTCAACTATTACAGAACTGGA		59	3721691	3721710	CAGAACTCCAATTCCTCCTC		59	NA	
Drosophila melanogaster	50	lectin-24A	FBgn0040104	FBtr0077539	1	1	1	60	2L	3717571	3717589	AGTATGTTGCTATCCACCA		57	3717529	3717549	GCTTCGTTCGCTAATATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305	3	10	10	83	2L	3624270	3624291	CAGCTAATTTCCAATCTAGACG		58	3623866	3624229	GAATTCCTCGTTGATCTTTCTG		59	NA	
Drosophila melanogaster	50	CG17593	FBgn0031544	FBtr0077525	1	1	1	130	2L	3516254	3516333	GAGTATACGGATCTGAGCA		57	3516427	3516445	ATAATACGTGACTCGAGGA		57	NA	
Drosophila melanogaster	50	CG31954	FBgn0051954	FBtr0077563	3	1	1	61	2L	3509607	3509625	CAACTACACCAATGTGGAC		58	3509564	3509582	CAAACTTGATGGGATGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9664	FBgn0031515	FBtr0077607,FBtr0077605	3	2	3	90	2L	3292520	3292538	TGTGAATCGCTCATCACTC		59	3292290	3292466	CTATCAAGGCTGTCTCCTC		58	NA	
Drosophila melanogaster	50	gammaTub23C	FBgn0004176	FBtr0077641	3	1	1	125	2L	2973361	2973439	ACTCCAAGCTCTACAATCC		58	2973527	2973546	GGTCAATGATGTCGAATACC		58	NA	
Drosophila melanogaster	50	CG9867	FBgn0031421	FBtr0077767	1	1	1	158	2L	2382548	2382622	TTTCCTATGAAAGGCTCCC		58	2382744	2382762	TGTAGCAATTCGGATCCTC		59	NA	
Drosophila melanogaster	50	CG17646	FBgn0031362	FBtr0077886,FBtr0077885	3	2	2	94	2L	1747846	1748777	CTGTGGTCTTGACATTTCC		58	1748834	1748853	GATCAACGAGAGGAAGTAGG		59	NA	
Drosophila melanogaster	50	CG17646	FBgn0031362	FBtr0077886,FBtr0077885	1	2	2	92	2L	1748860	1749521	GAAATACCCTTCCAGAGCC		59	1749577	1749595	GTAGATCCGGAATGAGTCC		58	NA	
Drosophila melanogaster	50	CG17660	FBgn0031356	FBtr0077912	3	1	1	82	2L	1708393	1708471	GACTGAGGAGGAATATGGTC		58	1708330	1708349	TATGACGGAAGCGATAACAG		59	NA	
Drosophila melanogaster	50	chinmo	FBgn0086758	FBtr0077879,FBtr0077877,FBtr0077880,FBtr0077878	1	4	4	94	2L	1690675	1690693	GTTTCTCGTCTAACTTGGC		58	1690751	1694237	TTTGAATACTACGCCATCG		57	NA	
Drosophila melanogaster	50	CG5397	FBgn0031327	FBtr0077920	1	1	1	60	2L	1241601	1241619	ACAGCTTCGAGTACAATGG		59	1241643	1241661	ATTGGTAGACCCTTCAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31976	FBgn0051976	FBtr0078152	3	1	1	60	2L	139079	139097	AACCACCATTAACGAGGAG		59	139037	139055	GGAGTGCTGAAGTATGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41352	FBgn0083994	FBtr0111195	3	1	1	60	X	22319058	22319081	CGATACTAGTAATGTAACCAGAGG		59	22319099	22319118	ACGGGCATTATTTAGACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32500	FBgn0052500	FBtr0077374	2	1	2	102	X	21494389	21494407	GGAGAGCTTGAAGTTCCTG		59	21493238	21494323	CAATTTGGCCAAAGGACTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34120	FBgn0083956	FBtr0110827	1	1	2	80	X	21004971	21005058	GGTGAAGTTTAGTAATGCCTC		58	21005100	21005118	TTGGTGAGAATAGTGGCTG		59	NA	
Drosophila melanogaster	50	Pp4-19C	FBgn0023177	FBtr0077324,FBtr0077325	2	2	2	143	X	20293018	20293100	CAATTACTGCTATCGCTGC		59	20292893	20292911	TAGAGAAAGTAGTCCGCCT		59	NA	
Drosophila melanogaster	50	CG7378	FBgn0030976	FBtr0113004	3	1	2	150	X	18800155	18801537	CCACTATTATCAGTCGCCC		59	18801651	18801669	ATCACAGTCAACGTCATGG		59	NA	
Drosophila melanogaster	50	Cyp18a1	FBgn0010383	FBtr0074609,FBtr0074610	2	2	2	272	X	18584261	18584279	TGGTACAGGTGATCATCGA		59	18583571	18584025	CATTGAGTTCCACATCCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	RhoGAP16F	FBgn0030893	FBtr0074513	2	1	2	80	X	17990420	17990438	GAAATCAAGAGTCCGTTGG		58	17990482	17990562	CAGATCGGTTAACAACCAC		58	NA	
Drosophila melanogaster	50	Socs16D	FBgn0030869	FBtr0074473	1	1	1	81	X	17716884	17716902	GTATGCCAAGTTCAAGTCG		58	17716756	17716839	GAAGAGATATCTGCCGCTC		59	NA	
Drosophila melanogaster	50	CG32564	FBgn0052564	FBtr0074390	1	1	1	76	X	17101612	17101630	TACAACGGTGGATACAACG		59	17101670	17101688	TTGAATCCACCTGAGAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eo	FBgn0030597	FBtr0073975	3	1	1	60	X	14812146	14812164	AGGTCCATAAGACCTACTC		57	14812104	14812122	TTCGGTTGAAGATAGGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10993	FBgn0030524	FBtr0073837	1	1	1	107	X	13684884	13684902	ATATCCAACCTACCCAAGC		58	13684736	13684813	CTTTCTTGACAGCTTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11816	FBgn0030495	FBtr0073785	2	1	1	156	X	13447291	13447455	CGAGGAGTACAAATTGGTG		58	13447153	13447173	GGCAATATAGTACTGTGTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1463	FBgn0030406	FBtr0073657	2	1	1	152	X	12504839	12504857	TCTACGAGGTGTTATCTCC		57	12504651	12504723	TTCCTCGAATTCCTCACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11727	FBgn0030299	FBtr0073546,FBtr0073547	2	2	2	88	X	11331116	11331135	GATCATACTTGGAGGTCTCG		59	11330817	11331066	GGATACGTTATTCTCCTGCA		59	NA	
Drosophila melanogaster	50	hop	FBgn0004864	FBtr0073457	2	1	1	152	X	11256257	11256348	ATTAGATGGTACTCTCCGGA		59	11256124	11256142	ATTGAGGAAATCCTCCTGC		59	NA	
Drosophila melanogaster	50	Sp1	FBgn0020378	FBtr0112894	3	1	3	98	X	9647339	9647592	TAACATCACAGCTAGTCGC		59	9647654	9647672	GAGGATGACTGTGATCCAG		59	NA	
Drosophila melanogaster	50	BCL7-like	FBgn0026149	FBtr0071358	3	1	1	71	X	9251289	9251604	TCTAACACCTGTTTCTCCG		58	9251639	9251657	CTCAGAGAAGGGCATACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7267	FBgn0030079	FBtr0071354	1	1	1	206	X	8965964	8965982	GTAACTTGTCCCTCCATCC		59	8965706	8965724	TATCGGTATTCAGGAGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Corp	FBgn0030028	FBtr0071179	3	1	1	61	X	8165258	8165276	GCTTGAAGGTTCTCTTCCA		59	8165215	8165233	GTAAGTGTTCGAGGATCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdp	FBgn0029958	FBtr0071076	2	1	1	181	X	7627154	7627174	GCTAGTTTCCTCAAGTATGTC		58	7626887	7626905	TCAATGTGAACCAAACAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32741	FBgn0052741	FBtr0070958	1	1	1	158	X	6591539	6591557	TACTTCCGTTTCGTTCTGG		59	6591676	6592136	GTACAACAAGAATCGATTGAGG		59	NA	InUTR
Drosophila melanogaster	50	CG14443	FBgn0029880	FBtr0070949	2	1	1	60	X	6529428	6529448	GGTTCTGGACAATATTGATCG		58	6529470	6529488	TAGTCGGCAAATGTTACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33668	FBgn0053668	FBtr0091647	1	1	1	78	X	6313337	6313414	TTCTTGACTACTCCGAAGC		59	6313277	6313295	TTCTTAGAACGGGAAAGCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sirt4	FBgn0029783	FBtr0070852,FBtr0070850,FBtr0070851	2	3	3	60	X	5558825	5558845	CTGGCGGATATCAAGATATCC		59	5558785	5558803	GAAAGTCGAACAGTTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15577	FBgn0040904	FBtr0070660	2	1	1	60	X	4170863	4170882	CTACTGAGGTCCATACTACG		58	4170822	4170840	ACTCTTTGTCACTCATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ilp7	FBgn0044046	FBtr0070577	1	1	1	104	X	3562424	3562442	ATCAAGAAGACAACCACGG		59	3562632	3562650	TATCGATGGAGTGTTTCCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG16781	FBgn0029661	FBtr0070530	3	1	1	106	X	3357842	3357923	TATCATATGGAGATGCGTGG		59	3357755	3357773	CTAGTTGCGAAGCATATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14418	FBgn0040354	FBtr0070565	1	1	1	71	X	2777186	2777204	GATCAGGTGAAGAATGTGC		58	2777133	2777151	CTCAGTAGTAACCTCGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2658	FBgn0024992	FBtr0070503,FBtr0070502	3	2	2	133	X	2590887	2590964	CAGCATGGATTCATTTAACC		57	2590773	2590792	CTACAAATTCCTTCACCTCC		57	NA	
Drosophila melanogaster	50	gt	FBgn0001150	FBtr0070460	3	1	1	268	X	2322755	2322849	TTCGATCTCAAGACTGATCG		59	2322506	2322524	GAAAGATCCAGGACCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11664	FBgn0040341	FBtr0070163	1	1	1	60	X	770170	770188	CCTCTTAACATGTTCGCAC		58	770210	770230	GAGCGATATGCATCAAATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12467	FBgn0025623	FBtr0112912,FBtr0112913	1	2	2	99	X	712955	712973	ACCTAACTGTCGTTTCTGG		59	712816	712892	AGAACACAGTTAGGATCGC		59	NA	
Drosophila melanogaster	50	CG41578	FBgn0085704	FBtr0114153	1	1	1	60	U	6695536	6695554	AACGTAGTACCTGTACCAC		58	6695578	6695596	GTGTAATCGTGCTAGTGTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41367	FBgn0085633	FBtr0114077	3	1	1	60	U	2759884	2759903	AAACTTCAAAGGTAGTGGTC		57	2759843	2759862	AAGTTGTCCATAGGACAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-3091a	FBgn0082979	FBtr0113579	3	1	1	69	3R	1422493	1422511	TGGTACGTAATTGCAAGAG		57	1422442	1422461	TACGTTGTTCAGTGAATGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15561	FBgn0039829	FBtr0085776	3	1	1	71	3R	27040842	27040860	GAAGAAAGACAAGGCTGAG		58	27040789	27040807	ATCTTGACGGGATCTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PH4alphaSG1	FBgn0051014	FBtr0085686	2	1	1	93	3R	26329654	26329672	GTACAATCTGCACAGTTCC		58	26329525	26329597	CCACTCATTGCAAATCCAC		59	NA	
Drosophila melanogaster	50	CG31371	FBgn0051371	FBtr0085687	3	1	1	158	3R	26327966	26328122	AAATATCCAAGTCCACGGA		58	26327826	26327844	GATCTGAACTGACAGGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpL32	FBgn0002626	FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555	1	4	5	81	3R	25871345	25871425	GATATGCTAAGCTGTCGCA		59	25871282	25871300	AGATACTGTCCCTTGAAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Gycalpha99B	FBgn0013972	FBtr0085453	3	1	1	168	3R	25509348	25509426	TATCCACAAGCTCAAACTG		57	25509558	25509576	TTCAATGATACCTGTGCAG		57	NA	Nonspecific
Drosophila melanogaster	50	CG1957	FBgn0027873	FBtr0085358,FBtr0085357	3	2	2	60	3R	24861862	24861882	GGAGATCATCAATCTAGACGA		58	24861904	24861922	AGGTACAAACTCATAGCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9986	FBgn0039589	FBtr0085304	3	1	1	80	3R	24433363	24433381	CAGAGCTGGTGTTTAAGTG		58	24433425	24433502	GTTGCAAGGTGCTTAACTC		59	NA	
Drosophila melanogaster	50	CG14262	FBgn0039503	FBtr0085177	1	1	1	60	3R	23090697	23090715	CGTACTCCAGATCAATGGG		59	23090655	23090678	GTATATGAACTCCAGGAAGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5880	FBgn0039489	FBtr0085108	3	1	1	175	3R	22943085	22943104	TACGTTATGGCTGTGATCAC		59	22943242	22943320	CAATTGTTGAGCCAAGGAC		59	NA	
Drosophila melanogaster	50	Lerp	FBgn0051072	FBtr0085097,FBtr0085099,FBtr0114572	3	3	3	103	3R	22686815	22686833	CGATTCCTGCACCTATCAG		59	22686665	22686748	AACTCAGATCCAACAGCTC		59	NA	
Drosophila melanogaster	50	CG6036	FBgn0039421	FBtr0085027	2	1	1	60	3R	22170421	22170441	GTGAATTTATTAGGTCACGGC		59	22170381	22170399	ACGCTGTTAACAATCATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HLHm7	FBgn0002633	FBtr0084960	3	1	1	101	3R	21863207	21863225	TTGGAACCACACTGATGAC		59	21863290	21863308	CACAGACGATACTGAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5890	FBgn0039380	FBtr0084908	3	1	1	124	3R	21693136	21693155	GTTCACCAAACAGGAAATCC		59	21693926	21694183	AACTTGAATTGCCATGTGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG31110	FBgn0051110	FBtr0084792	3	1	1	80	3R	20869765	20869839	TTCCGGAGTGTAAATGGTC		59	20869703	20869722	TGTTGACTAGATCGATGACG		59	NA	
Drosophila melanogaster	50	CG31121	FBgn0051121	FBtr0084724,FBtr0084723	3	2	2	106	3R	20708635	20708712	CTATTACTTGGATTTGGTCACC		58	20708550	20708568	CCGAGTTAATCTGATCCCA		58	NA	
Drosophila melanogaster	50	HdacX	FBgn0051119	FBtr0084734	3	1	1	123	3R	20681665	20681739	CAAGCACATTCACAAGCTC		59	20681560	20681580	CAGTGACTTTAGGTATTCCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mask	FBgn0043884	FBtr0084563,FBtr0084562	3	2	2	128	3R	20061670	20061760	GGAGATAGATGTGCTACAGG		59	20061851	20061869	GAGATATTGCTGGAACGCT		59	NA	
Drosophila melanogaster	50	kal-1	FBgn0039155	FBtr0084549	3	1	1	104	3R	19972454	19972535	AAGGAGAAGGTCTATGAACTG		58	19972929	19972947	CTTCAGTTTGCTGAACTCC		58	NA	
Drosophila melanogaster	50	Atg6	FBgn0010709	FBtr0084590	2	1	1	61	3R	19875163	19875181	AAGATCATCGATCCCTCCA		59	19875066	19875084	TCCTCCGAGTTAAACTGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10182	FBgn0039091	FBtr0084486	3	1	1	89	3R	19414622	19414701	GAAAGAATCAGGACCAGCT		59	19414551	19414569	AGTTGACCTCTACAATGCG		59	NA	
Drosophila melanogaster	50	Dph5	FBgn0024558	FBtr0084280	2	1	1	60	3R	18408736	18408754	ATCTGGAGATGTACACCTC		57	18408624	18408714	CCATAGAACTCTTGCATATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AnnIX	FBgn0000083	FBtr0089520,FBtr0089518	3	2	4	69	3R	16894704	16894722	AGAACAAGTACGGCAAGAG		59	16896459	16896477	AAGACGTAGCTGTAGTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5630	FBgn0038842	FBtr0113257,FBtr0083979	1	2	2	97	3R	16751961	16752071	CAGCGAGGATTATGATCCA		58	16752132	16752150	TTCCAGTTACTTGCTTTGC		58	NA	
Drosophila melanogaster	50	CG7671	FBgn0038609	FBtr0083577	2	1	1	123	3R	14192619	14192637	GAAGTGGACCAGATACCTC		58	14192724	14192807	TAAACACGCTGAGATGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7670	FBgn0038608	FBtr0083586	1	1	1	84	3R	14191451	14191469	TAATACGCCAAAGCAAACG		59	14191324	14191403	CTTCTCAGTCACATCTGGA		58	NA	
Drosophila melanogaster	50	cdm	FBgn0038574	FBtr0083619	3	1	1	173	3R	14006605	14006624	AGGAGATCGATGTCCTAGAG		59	14006332	14006409	AGAACATAACAATGGCCGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	ald	FBgn0000063	FBtr0083478	2	1	1	85	3R	13498506	13498526	CAGGGATATCTAAACGAAACC		58	13498573	13498654	CGCACAAGTTGATAATCGT		58	NA	
Drosophila melanogaster	50	CG18213	FBgn0038470	FBtr0083429	2	1	1	88	3R	12865224	12865309	ATAACCAGAATACGACCGC		59	12865154	12865172	CGAGATTATCGTTCCCTCC		59	NA	
Drosophila melanogaster	50	sra	FBgn0086370	FBtr0083255	2	1	1	76	3R	12022174	12022192	AGTTATTCCGCACATTCAG		57	12022232	12022250	GTCATAGTTAACACGCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5903	FBgn0038400	FBtr0083281	3	1	1	82	3R	11971672	11971690	TACAACTTCATCAAGGGCG		59	11971608	11971627	ATGTACTTAAGGTCCTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31313	FBgn0051313	FBtr0082982	2	1	1	81	3R	10392939	10392957	TTATCCAAGGCTAAGGAGC		58	10392718	10392897	CATTCACTACCTGATAATTGGG		58	NA	
Drosophila melanogaster	50	CG9307	FBgn0038180	FBtr0082826	2	1	1	119	3R	9594695	9594802	AAACTGAATGTGAACGACG		58	9594885	9594903	GTTCTTGTTCGAGTTGCTC		59	NA	
Drosophila melanogaster	50	CG34044	FBgn0054044	FBtr0100099	3	1	1	80	3R	9538984	9539049	GGACATTTGCATACCTCAC		58	9538922	9538940	ATCTGGATGTTGCTCTTCC		59	NA	Nonspecific
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	2	8	8	284	3R	9504400	9504475	AACACGACGTAAATCAGGA		58	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG9588	FBgn0038166	FBtr0082849	3	1	1	131	3R	9501449	9501531	GAAAGAGCTGGTCTCTGTG		59	9501336	9501354	TTTCAGCTGGACATTCTGG		59	NA	Nonspecific
Drosophila melanogaster	50	lig3	FBgn0038035	FBtr0082600	2	1	1	80	3R	8224927	8225010	GACCTAGAGAAGCTTAGAACG		59	8224867	8224885	AGTATCGAGACAGCTTTGG		59	NA	
Drosophila melanogaster	50	Cyp313a5	FBgn0038005	FBtr0082619	2	1	1	92	3R	8059775	8059793	CTTACTCGCGGAATTTGTC		58	8059651	8059719	CCCATAGTAATTTGAGCGG		57	NA	
Drosophila melanogaster	50	CG31358	FBgn0051358	FBtr0082554	3	1	1	84	3R	7856787	7856805	ACTTTCCCTGGAAATCCAG		59	7856666	7856740	TATCTCCATCAAGTCCACTC		58	NA	
Drosophila melanogaster	50	CG5270	FBgn0037897	FBtr0082387,FBtr0082388	3	2	2	81	3R	7254514	7254532	AAGTTCTTGGACAAGTGTG		57	7254577	7254656	CTAGTCGAATCTGCTTCAG		57	NA	
Drosophila melanogaster	50	CG4596	FBgn0037849	FBtr0082289	1	1	1	79	3R	6700299	6700317	ATCCTGACCGACATTTGTG		59	6700360	6700378	TACATGGATAGTTCCTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rlb1	FBgn0014022	FBtr0082062	2	1	1	170	3R	5339111	5339187	GGTGATATCCAACAAGAAGG		57	5339320	5339338	TTTAGAGCCTTCAACTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9740	FBgn0037669	FBtr0081984	1	1	1	60	3R	5083898	5083984	TCCATAGGAAGTCATGTCTC		58	5083857	5083876	ACCTTAATACCGAATTCAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pyd3	FBgn0037513	FBtr0081780	2	1	1	97	3R	3573996	3574015	ATCTTCTTATGTCGCAGCTC		59	3573858	3573876	GACACAGGTTCAGATCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33097	FBgn0053097	FBtr0081735,FBtr0110852	1	2	2	80	3R	2192121	2192140	CGAGGTTATCAAGATACGCA		59	2192000	2192081	GACTTGGAAATCATTCGAACTC		59	NA	
Drosophila melanogaster	50	Osi12	FBgn0037419	FBtr0078602	2	1	1	60	3R	2104825	2104844	TACTTCTTCAACGGTCACTC		59	2104867	2104885	CAATCTCATCGGATGTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1213	FBgn0037387	FBtr0078643,FBtr0078642,FBtr0078644	1	3	3	64	3R	1671125	1671143	GATGCAGCTCTTCATTGTG		59	1671243	1671261	GGTATGAAACATACGGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	laza	FBgn0037163	FBtr0078508	2	1	1	64	3L	22453606	22453625	GATCTGAGCATACGGTATCC		59	22453561	22453579	ATCATGAGCAGTAGCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Csp	FBgn0004179	FBtr0078495,FBtr0078493,FBtr0078494	3	3	3	89	3L	22262748	22262766	TTTGGGCTTGTACATAGCC		59	22262819	22262899	ATAACCACCGCCTTTACAG		59	NA	
Drosophila melanogaster	50	CG7370	FBgn0037133	FBtr0078436	3	1	1	164	3L	21763095	21763113	CACACCTACACTCACTGAC		59	21763337	21763356	ACCAGTATTGTAGTAAGGCA		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Eip78C	FBgn0004865	FBtr0078308,FBtr0078307,FBtr0078306	2	3	3	141	3L	21256958	21256979	GCTTATACTAATAAAGCTGGGC		58	21257079	21257157	GACAAAGTCAGAATCGTAGAG		58	NA	
Drosophila melanogaster	50	gig	FBgn0005198	FBtr0074819	3	1	1	98	3L	20131160	20131239	ATACTGCAGGTTACGTTCC		59	20131301	20131319	AAAGTCATTGCCAATGTGG		58	NA	
Drosophila melanogaster	50	CG6843	FBgn0036827	FBtr0075067	2	1	1	65	3L	18895726	18895744	AGAAGGACAAATCGAGCAG		59	18895773	18895791	ATGAAGAGGAGTCTGAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33051	FBgn0053051	FBtr0075230	1	1	1	102	3L	17419835	17419853	ACCTTGATCACAAGGACTG		59	17419694	17419712	GAGATGTTTAGCTCTTGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Taf4	FBgn0010280	FBtr0075450,FBtr0075449,FBtr0075451,FBtr0075448,FBtr0114589	1	5	5	175	3L	16111339	16111357	GTATGATAACGCCGAATGC		59	16111496	16111621	TATTTGCACAATGTTCGCC		59	NA	
Drosophila melanogaster	50	CG5235	FBgn0036565	FBtr0075497	3	1	1	72	3L	16082903	16082922	CAATCCTGAAGTTTAAACGC		57	16082795	16082869	TTAAACGTATCAGCGGAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7857	FBgn0026738	FBtr0075605	3	1	1	91	3L	15497253	15497332	AAATGCTCTTCCAGGTCAC		59	15497180	15497201	TCATGTATGAGATAAGCGAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13477	FBgn0036438	FBtr0075685	1	1	1	63	3L	14684761	14684779	CTCGAATTCCATCCGTACC		59	14684806	14684824	ATTGGATTATCGCCTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5048	FBgn0036437	FBtr0075684	2	1	1	195	3L	14678409	14678486	ATGTCTTCTTGCAGATGGG		59	14678645	14678663	CAACGATCAACATTGACGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Tsp68C	FBgn0043550	FBtr0075751	2	1	2	64	3L	13837014	13837129	TTTGATATGTGGCTTGCTG		58	13837156	13837175	GAATGCGTTTGTTATCGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10627	FBgn0036298	FBtr0075967	2	1	1	268	3L	12521140	12521159	ATCCTAAATCACAAGGGCTG		59	12520822	12520909	TTATCGGTGTCCTCTTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10418	FBgn0036277	FBtr0075954	2	1	1	82	3L	12329936	12330017	AACGACCTCAGCATATGTG		59	12330061	12330081	GGATCTGTGACACTGATATCC		59	NA	
Drosophila melanogaster	50	CG32105	FBgn0052105	FBtr0075953	2	1	1	155	3L	12328104	12328122	GATAGCTCCGGTTATTTGG		57	12328315	12328333	CAACTGGTCAAAGTTGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4300	FBgn0036272	FBtr0076009	3	1	2	147	3L	12266715	12268188	ATGACTAGCTCAGATGAGC		58	12266130	12266604	ATTCAGCAATGTTCTGCAG		58	NA	
Drosophila melanogaster	50	Pi3K68D	FBgn0015278	FBtr0076086	1	1	3	129	3L	11779734	11780170	AACGACAATACTGTGTCGA		58	11779623	11779641	CGAAACCCTTTAGATGGTG		58	NA	InUTR
Drosophila melanogaster	50	CG14132	FBgn0040817	FBtr0113334	1	1	1	75	3L	11705708	11705726	AAGGACTTTATCGTCTCGC		59	11705651	11705669	AAATCACGTTTCAGTTGCG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Ilp3	FBgn0044050	FBtr0076373	1	1	1	78	3L	9794900	9794990	ACCAAGAGAACTTTGGACC		59	9794840	9794858	TCAACAGTCTTTCCAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	defl	FBgn0036038	FBtr0076403	2	1	1	60	3L	9718106	9718182	CCCAAGATAAATCCCATGCT		59	9718205	9718223	TAATGGTGTTCAGCTTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RecQ4	FBgn0040290	FBtr0076729	1	1	1	84	3L	8164758	8164838	AAGTACTTGAAGCATGCTG		58	8164692	8164712	CCTCCTTGAATGTCTTATCTC		57	NA	
Drosophila melanogaster	50	CG8563	FBgn0035777	FBtr0076852	3	1	1	109	3L	7387918	7387936	TCACTGGAACTATCAGGGA		59	7388096	7388114	TGAATTCCAGATACCGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Glu-RI	FBgn0004619	FBtr0076982	3	1	1	144	3L	6626307	6626327	GAAAGAGAACGGGTTATAGAC		57	6626433	6626515	TGAGAATCACGCTTATCCA		58	NA	
Drosophila melanogaster	50	CG6602	FBgn0035673	FBtr0077047	3	1	1	60	3L	6065538	6065556	AAGCAGGCTATTTACACAG		57	6065579	6065598	GATCGTAAATCTGCTTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bj1	FBgn0002638	FBtr0077075	2	1	3	113	3L	5925538	5925556	TCTAGACAACGTGGAACTC		58	5925355	5925373	ATTAGTCAGGGCCTTTCTG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG10592	FBgn0035619	FBtr0077129	3	1	1	86	3L	5586367	5586385	GTCTATCAACGGCTATCCG		59	5586230	5586248	AAGATGGTAAAGGGAAGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14985	FBgn0035482	FBtr0073191	1	1	1	109	3L	4004264	4004282	GATCAAGGGTGACTTGGAG		59	4004526	4004547	GCCCAATCTTAATTATGTAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32487	FBgn0052487	FBtr0073007	1	1	1	60	3L	3016472	3016490	AAAGGGAGTTATTCAGCCG		59	3016363	3016448	GATATCTGTGCACATGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32298	FBgn0052298	FBtr0072897	2	1	1	65	3L	2390410	2390487	AAAGGACCTATCAACAGGC		59	2390363	2390382	ATATCGTGAACAGACCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34259	FBgn0085288	FBtr0112453	1	1	1	60	3L	2027088	2027107	ACAACCTGCTATACAATGAG		57	2027130	2027148	TATACGAACACCTGATGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17129	FBgn0035151	FBtr0072612,FBtr0072614	1	2	3	117	3L	679822	679909	GCAAGAATTTAGCGACCTG		59	679723	679743	CGTTTCAACCATTTAGCTACC		59	NA	InUTR
Drosophila melanogaster	50	CG7047	FBgn0035103	FBtr0072535,FBtr0072534,FBtr0072536	2	3	3	135	3L	177251	177269	GATAAAGTGCAGAGTGTCC		57	177068	177152	ATACTCGATGGTCTCAGTG		58	NA	
Drosophila melanogaster	50	CG13581	FBgn0035014	FBtr0072300	2	1	1	65	2R	20394818	20394836	CTGTTATACTGTGACCAGC		57	20394865	20394883	GACAGATGGTACAGGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DnaJ-60	FBgn0020129	FBtr0072278,FBtr0072279	2	2	2	141	2R	20046224	20046242	AACTACGATCCCAATCCAG		58	20046040	20046119	GTTTAAAGGACGACCTGAC		58	NA	
Drosophila melanogaster	50	l(2)not	FBgn0011297	FBtr0072095	1	1	1	71	2R	19593999	19594017	TTTGTTCCTGGACAGAAGG		59	19593946	19593964	ATGTTCATCTTAACGCCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30413	FBgn0050413	FBtr0072040	1	1	1	60	2R	19217355	19217375	GAAGACGTATACTCTAACCCA		58	19217315	19217333	CGTGATCTTGATGTAGGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	robo	FBgn0005631	FBtr0071923,FBtr0071922	1	2	2	80	2R	18584836	18584921	GACACTCAAGTCACTATCTCG		59	18584776	18584796	AATACCCTGAGTATTCTCAGC		58	NA	
Drosophila melanogaster	50	CG10307	FBgn0034655	FBtr0071671	3	1	1	148	2R	17577356	17577432	CTACAGCTAATGGCTTTGC		58	17577544	17577562	TCTAGATCCTGTCCTGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13430	FBgn0034518	FBtr0100496	3	1	2	71	2R	16439277	16439295	AGCAATGAGGTATGCTGAG		59	16439224	16439242	TAATCTGTGGGCGAAACTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11044	FBgn0034484	FBtr0086313	1	1	1	151	2R	16121738	16121758	AATGGTGGACCACTATAAGAG		58	16121871	16122074	CGCGTATGATCAAAGTGTC		58	NA	
Drosophila melanogaster	50	CG6484	FBgn0034247	FBtr0086903	1	1	1	76	2R	13470792	13470810	CGATATCGATGACGAGCTC		59	13470318	13470752	ACAGAATGTTGACCTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6421	FBgn0025827	FBtr0087043	2	1	1	65	2R	12760235	12760253	ACGATTATGCTCGAATCCA		58	12760282	12760300	GGAAATTGTAGGGCATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34459	FBgn0085488	FBtr0112765	1	1	1	68	2R	12713684	12713702	GATGGTCGATCAACTGGAG		59	12713734	12713752	ATCGAATTGGACTCCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30100	FBgn0050100	FBtr0087140	2	1	1	70	2R	12179414	12179432	AGTCGGATATCGAGGAGAC		59	12179465	12179484	GTTGGATGTCTTGTTGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Khc	FBgn0001308	FBtr0087184	2	1	1	88	2R	12157151	12157307	CTGTGACAAACATGAACGA		58	12157081	12157099	TTTCTTCTGGTTCTCCAGG		58	NA	
Drosophila melanogaster	50	krimp	FBgn0034098	FBtr0087189	3	1	1	60	2R	12127277	12127295	AACCGATTCCTATTGCCTC		59	12127235	12127255	GATTGTAGATATCACGTCTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30094	FBgn0050094	FBtr0087233	2	1	1	78	2R	12030038	12030057	GATAACCTCTGCGACTATCC		59	12030098	12030116	ATCTCTTCTTGCAATGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp50b	FBgn0050073	FBtr0087552	2	1	1	90	2R	10258866	10258884	AGTTGGTCTACTGTTGTGG		59	10258938	10259010	CAAGGACCATAGTCATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34379	FBgn0085408	FBtr0112616,FBtr0112614,FBtr0112615	2	3	3	194	2R	10238350	10238431	ATGGATGAGCTCATCAAGC		59	10238588	10238607	TAAACTGGTTATGTTGCCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	SelD	FBgn0020615	FBtr0087564,FBtr0087565	3	2	2	60	2R	10157196	10157216	GTACCAAGATGACAGAGAAGG		59	10157156	10157175	TTAAAGCCTCGCATTATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8485	FBgn0033915	FBtr0087572,FBtr0087570,FBtr0087571,FBtr0087569	1	4	4	90	2R	10126046	10126142	GTTCACAGGGATCTAAAGC		57	10125974	10125992	AGAACTTGTTGCTAAACCC		57	NA	
Drosophila melanogaster	50	CG13332	FBgn0033851	FBtr0087674	2	1	1	61	2R	9413142	9413160	CATCCAGAAGCAAATCTGG		58	9413185	9413203	CATTTAGCTGACGTTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4646	FBgn0033810	FBtr0087764	2	1	1	93	2R	9107489	9107507	CATGAAGTGCAAGATGTGC		59	9107355	9107373	CTTAAATGCGCCAGAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Psc	FBgn0005624	FBtr0087798	3	1	1	174	2R	8858020	8862016	AACATCAAATCGGACACCA		59	8857864	8857882	CCGAGGGACTAAAGATCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	spt4	FBgn0028683	FBtr0087840	2	1	1	75	2R	8521468	8521552	AGATTGTCCCGCTTTACTC		59	8521591	8521609	TGTCACGTAAGGTAGACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0087931,FBtr0087929,FBtr0087930	1	3	6	61	2R	8337239	8337257	CAGATTAGCAGCGATATGC		58	8337282	8339492	TATTCGCATTTGCTTGCAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	128up	FBgn0010339	FBtr0087976	2	1	1	106	2R	7926105	7926189	GGAATTTAAATATGCGCTGG		57	7926258	7926276	TCTTCACAATCTGGACCAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Drip	FBgn0015872	FBtr0088141,FBtr0088142	2	2	2	75	2R	7300182	7300200	GGATATCAAGGGATCAGCG		59	7300068	7300143	GCTCAGTTTGATTGCACAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	cdc2rk	FBgn0013435	FBtr0088430,FBtr0088429	3	2	2	218	2R	5955042	5955060	CACATGATTGGCCAATCAG		59	5954777	5954797	TAAATCCGAGATGGGAATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	cdc2rk	FBgn0013435	FBtr0088430,FBtr0088429	1	2	2	216	2R	5955042	5955060	CACATGATTGGCCAATCAG		59	5954779	5954797	AATCCGAGATGGGAATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30002	FBgn0050002	FBtr0088466	1	1	1	154	2R	5592562	5592655	CTTTAAAGATCACATACGACCC		58	5592768	5592788	CAGTTCTTATATCCACCTCCA		58	NA	
Drosophila melanogaster	50	Mmp2	FBgn0033438	FBtr0088500	2	1	2	139	2R	5545211	5545229	TGACATGAAAGAGTCACGA		58	5530973	5545110	GATACATACCCATCAAGAAGG		57	NA	
Drosophila melanogaster	50	Cyp4p3	FBgn0033397	FBtr0088593	3	1	1	135	2R	5130632	5130709	AATAGCATTTGTGAGACGG		57	5130808	5130826	TATCGCTCCATAGAAGTGG		58	NA	
Drosophila melanogaster	50	CG8642	FBgn0033312	FBtr0088729	2	1	1	62	2R	4501123	4501141	TCTACTGATCGAGCATCTC		57	4501079	4501097	TTCTTCTCCCGAAACTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30362	FBgn0050362	FBtr0088769	1	1	1	60	2R	4253173	4253191	CATTGCTTCTGCATCAACC		59	4253131	4253151	TCTTCATGCGGTAATAGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Optix	FBgn0025360	FBtr0088865	3	1	2	253	2R	3919743	3920822	ACTTCAGGGAACTTTATGCA		59	3921905	3921923	ATCCTGTAGGTACCATTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tsp42Ee	FBgn0029506	FBtr0086180	2	1	1	81	2R	2905066	2905085	GTCGAATTAATGACCACTGG		58	2905129	2905210	AGATAAAGCCGATCAGCTC		59	NA	
Drosophila melanogaster	50	CG17002	FBgn0033122	FBtr0086170	3	1	1	183	2R	2875602	2875620	GACTATGGAGAAGCTACCG		58	2875767	2876090	ATTCTGTGGAGGAAACTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG3420	FBgn0033100	FBtr0086135	3	1	1	188	2R	2644445	2644464	GATACTAAGACGGAACCTGG		59	2644138	2644232	TTATCTTTGTCCAGGTGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	Adf1	FBgn0000054	FBtr0086111,FBtr0086113,FBtr0086112	1	3	3	144	2R	2554511	2554588	TCCGCATGAAATTACTGTC		57	2554696	2554714	AATCTTGATGGTGTTGAGC		58	NA	
Drosophila melanogaster	50	CG7843	FBgn0033062	FBtr0086021,FBtr0086020,FBtr0086018	3	3	3	212	2R	1969490	1969508	TATCTACGCGATCCTAAGC		58	1968905	1969243	TTCCAAAGGCAATTCTCTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG11665	FBgn0033028	FBtr0086072	3	1	1	102	2R	1531219	1531335	TTATAGTTCATTGGGCCCG		59	1531135	1531154	GAGTATCATACCCAGTGACG		59	NA	
Drosophila melanogaster	50	TpnC41C	FBgn0013348	FBtr0086102	3	1	1	86	2R	954422	954494	GAGCAAACTGCATTACTACG		59	954355	954373	TATCGTACCCACCATAGCT		59	NA	
Drosophila melanogaster	50	snmRNA:158	FBgn0065104	FBtr0091750	2	1	1	60	2L	5206232	5206251	CAAGAAGGATCACTCTACCC		59	5206274	5206292	TATCCCATCTAACCCTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6448	FBgn0032976	FBtr0113044,FBtr0085939,FBtr0113046,FBtr0085938	3	4	5	86	2L	22140896	22140914	GAGCATTTAGATCTTGCCG		58	22140962	22141605	GTAAACAGCATCTTGATCCTG		59	NA	
Drosophila melanogaster	50	CG31693	FBgn0051693	FBtr0100262,FBtr0085931	3	2	2	60	2L	22015690	22015709	TGTCGAGAAACTTCATGGTC		59	22015732	22015750	AGCGAGATAACTGCTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33864	FBgn0053864	FBtr0091868	1	1	1	69	2L	21536679	21536697	AATTTAAAGGAACGTGGCG		59	21536729	21536748	CGCATTTATAAGTGGCAGTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17567	FBgn0040994	FBtr0081231,FBtr0081229	1	2	4	190	2L	19183448	19183516	CAAATTCCACTTAGCTGCC		59	19183223	19183241	AATGAGCACTGGATGTAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15253	FBgn0028948	FBtr0080782	3	1	1	94	2L	15616050	15616123	GATGAAGAACATCGTAACCAC		59	15615976	15615994	TACTTCTGATCAGTGGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31832	FBgn0051832	FBtr0080726	3	1	1	60	2L	15031307	15031326	TATACAAACTGGAACGGGTG		59	15031266	15031284	TGGTATCTTAGGGAGTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab14	FBgn0015791	FBtr0080627,FBtr0080628,FBtr0080626	1	3	3	267	2L	14357453	14357536	ATTCATGGCCAATTGTCCT		59	14357819	14357839	GTTGCCAATGAGAAAGATCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rab14	FBgn0015791	FBtr0080627,FBtr0080626	2	2	3	147	2L	14357443	14357526	CCGAGAAGAAATTCATGGC		58	14357637	14357655	TAATAGGAGCGTGTCACTG		58	NA	
Drosophila melanogaster	50	Nnp-1	FBgn0022069	FBtr0080473	2	1	1	60	2L	13364620	13364638	AGCAGAACAAAGATGACCA		59	13364578	13364596	TCATTCTTCGGCTTAAGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5075	FBgn0032464	FBtr0080421	1	1	1	60	2L	12979419	12979437	GGTGAGATCATTCGACTGG		59	12979460	12979479	CCGAAGTATCCTCGTAAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vir-1	FBgn0043841	FBtr0080391,FBtr0080390,FBtr0080389	2	3	4	105	2L	12407725	12409464	CCTTCGATGATCTCTTCCG		59	12407638	12407657	CTAGAATCATCAGAGTCGCC		59	NA	
Drosophila melanogaster	50	Mt2	FBgn0028707	FBtr0080329,FBtr0110911	2	2	2	60	2L	12097161	12097181	GAAAGATCTGGGAAGAAATGC		59	12097202	12097221	GCAATTTGTGAAAGACCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Csl4	FBgn0032346	FBtr0080226	1	1	1	153	2L	11123436	11123454	ATGAGACTGTAGTCTGCCT		59	11123247	11123319	ACCACCTGGCATTTATCAC		59	NA	
Drosophila melanogaster	50	porin	FBgn0004363	FBtr0080183,FBtr0080182	1	2	3	82	2L	10848458	10848551	CAGTCTGGAAACAAGAACG		58	10848394	10848413	AGATCAATGTTCACATCCGA		59	NA	
Drosophila melanogaster	50	ppk10	FBgn0065110	FBtr0100097	3	1	1	82	2L	10451065	10451084	CTGATTATGCCTACGATGGT		59	10450940	10451020	CGTGGTATCTTGCTCTAGG		59	NA	
Drosophila melanogaster	50	CG5188	FBgn0032247	FBtr0080024	2	1	1	61	2L	10429600	10429620	CTTTCATTGGACATGGAATCG		59	10429640	10429716	ATAATAGTGTAGTATCTCCGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13088	FBgn0032047	FBtr0079681	2	1	1	80	2L	8490118	8490136	AAGTTCTGCTAAGTCGCAG		59	8490177	8490253	AATCCCGTAGAACTTTACTAGG		59	NA	
Drosophila melanogaster	50	CG15818	FBgn0031910	FBtr0079442	3	1	1	60	2L	7411340	7411359	TGAAAGATGGACAGAAGAGG		59	7411382	7411400	TCGGATAGAGTCTTCTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13773	FBgn0042092	FBtr0079372	2	1	1	185	2L	6907125	6907241	AGCTCCAAAGAACAAATCC		57	6906958	6906976	GTCTTTGTAGTGTCACCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34126	FBgn0083962	FBtr0110840	1	1	1	80	2L	4991012	4991030	CAGATGAAGCTAGACAACG		57	4991071	4991154	GGTCTTGTGCCTATAATTATCC		58	NA	
Drosophila melanogaster	50	fred	FBgn0051774	FBtr0077508	1	1	1	80	2L	3929494	3929784	CAATGATAACCTGGTACCGA		59	3929433	3929452	TATAGTGGTTCTTCGATCCG		58	NA	
Drosophila melanogaster	50	Or22c	FBgn0026396	FBtr0077826	2	1	1	88	2L	2055777	2057042	CATCATGTTGAACACGTCG		59	2057093	2057112	CGAAGCAGTAGAGGAATAGC		59	NA	
Drosophila melanogaster	50	CG14341	FBgn0031315	FBtr0077964	2	1	2	68	2L	1166860	1166878	GTCTGGAGTGAACCAAGAC		59	1166909	1166988	GAGTATCTGTTCCGTTCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12788	FBgn0031041	FBtr0100291	2	1	1	60	X	19511430	19511449	TTCGGACAGATATACATGGC		59	19511389	19511407	TCCTAAGTGAGTTTGCCTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9699	FBgn0030772	FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369	2	6	7	80	X	16588098	16588116	CATTGAGGCGGTTAAATGC		59	16580763	16580781	CCTATGTAATCGCGATCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9938	FBgn0030500	FBtr0073850	2	1	1	186	X	13505495	13505514	ATTGCGGATCTATTCAGTCG		59	13505260	13505346	GCCATGATTTGTTCACCTG		59	NA	
Drosophila melanogaster	50	CG32686	FBgn0052686	FBtr0071468,FBtr0071467,FBtr0113446	1	3	3	60	X	10267481	10267499	CAACCAAACTCATCTACGA		57	10267439	10267460	CGTCTAAATAAGGATTCGTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sp1	FBgn0020378	FBtr0071381,FBtr0112894,FBtr0071380	2	3	3	61	X	9648300	9648318	GAACATCCATTCGTGTCAC		58	9648343	9648361	TCAGATGTGACGTCTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16782	FBgn0029659	FBtr0070531	1	1	1	60	X	3353767	3353786	TTTCTGTCATGGACTCTTCG		59	3353726	3353745	TTTCTTGGCATTATCATCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070509,FBtr0070510	3	2	14	163	X	3140216	3140333	GAGTATATTGCCGGTACCT		58	3140460	3140478	AAAGTCTCGTTCGAATTGC		58	NA	
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	1	8	8	80	4	671649	672942	CTAACAGCACAGATTGATGG		58	671588	671606	CAAATACGGGTGAAAGCTG		59	NA	
Drosophila melanogaster	50	CycG	FBgn0039858	FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799	3	5	5	97	3R	27426466	27426484	ACTTCCACATCAAGGAGTC		58	27426317	27426407	ATCAGGAATCCTCATGTACTG		58	NA	
Drosophila melanogaster	50	CG2267	FBgn0039792	FBtr0085672	1	1	1	60	3R	26453869	26453889	CCAAGTCACAGTTTACTTTGC		59	26453829	26453847	TGCTCGATACCTTGTACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12428	FBgn0039543	FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236	1	5	5	80	3R	23531106	23531201	GGAGTACATGCTGAAGAGTC		59	23531045	23531065	TTGATGCTGGACTTTCTAGTC		59	NA	
Drosophila melanogaster	50	CG3330	FBgn0039511	FBtr0085170	1	1	1	60	3R	23156320	23156339	TAAATCTGCAGAATAAGCCC		57	23156279	23156297	GTGGTCTTCTCCATTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scrib	FBgn0026178	FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085019	2	5	7	88	3R	22406736	22415639	CAACTACAGTCAACACCTG		57	22415691	22415709	TTAGGCACTTTAGTCGGAG		58	NA	
Drosophila melanogaster	50	jigr1	FBgn0039350	FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887	2	6	6	95	3R	21474753	21474771	GATAGGTCAAACAAGCGGT		59	21474830	21474920	CCTTATACTGGTGGCATCG		59	NA	
Drosophila melanogaster	50	CG7048	FBgn0038976	FBtr0084257	1	1	1	148	3R	18313401	18313419	GGTTCGTCATAGACATCGG		59	18313592	18313610	TGAGTTATAGAAGCGCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32855	FBgn0052855	FBtr0083234	3	1	1	63	3R	11905851	11905869	ATCTGTGTTGCTACTACGC		59	11905806	11905824	GCTAAGATCACTCAGGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14683	FBgn0037822	FBtr0100412,FBtr0082267	2	2	2	60	3R	6523603	6523623	GACTCCTAAACCCTACTAGAC		58	6523644	6523663	GTCACATCTATAGAGCTTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0082254,FBtr0082255,FBtr0082253,FBtr0082256	3	4	6	132	3R	6340056	6346801	ATTTAACGCATCCCTACCC		59	6337492	6337511	GATTGATCGATCATTGGCTG		59	NA	
Drosophila melanogaster	50	CG8379	FBgn0037638	FBtr0081922,FBtr0081921	3	2	2	102	3R	4651044	4651062	TATCCTGGTCAACTATCGC		58	4651128	4651370	TATCATTTGGCCATAGCCA		58	NA	
Drosophila melanogaster	50	CG9601	FBgn0037578	FBtr0081854	2	1	1	60	3R	4167774	4167794	GAAGCACAATATAGCTTTCCG		59	4167734	4167752	CATGTCCTTGATCTTGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL1	FBgn0037566	FBtr0081832	2	1	1	82	3R	4127781	4127858	AGGGAAATAATGAAGTCCTGG		59	4127899	4127920	GCTGGTAATATCCTTAATGAGC		58	NA	
Drosophila melanogaster	50	CG1124	FBgn0037290	FBtr0078841	3	1	1	149	3R	792947	793347	TTCCTGATATTCAGCTGCC		59	793460	793478	TCAGTTTCAGGGATGTCAC		59	NA	
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	3	8	8	172	3L	16956749	16956767	ACGTCAAGTACAAGGACTG		59	16956901	16956979	CAATAGACCCTTGTGAATCAC		58	NA	
Drosophila melanogaster	50	CG9701	FBgn0036659	FBtr0075321	2	1	1	87	3L	16731143	16731161	CTTTAATCACGACATGGGC		58	16731212	16731822	CTTGGGATAGACCTTGAGC		59	NA	
Drosophila melanogaster	50	Tollo	FBgn0029114	FBtr0075607	2	1	1	60	3L	15230951	15230970	CAATAGGATCACTCAGTTGG		57	15230993	15231011	GGTACTCAGACTCAGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34032	FBgn0054032	FBtr0100087	3	1	1	62	3L	12883540	12883558	ACAATGTGGAACCTATCCG		59	12883652	12883670	GTGTCGATGATGAAATCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3552	FBgn0035999	FBtr0076464,FBtr0076463,FBtr0114371	1	3	3	86	3L	9452140	9452160	CGAGTACTGTGTAAACAAGGA		59	9452208	9452292	TTATCAGCATCTGGCAAGG		59	NA	
Drosophila melanogaster	50	Tequila	FBgn0023479	FBtr0076526	3	1	4	94	3L	9078323	9078341	GTATTTGCCAGCCTAAGAC		58	9078396	9078481	GGCAGATAGTATCATAGTTTGG		58	NA	
Drosophila melanogaster	50	CG6416	FBgn0035917	FBtr0089568,FBtr0089561,FBtr0089563	1	3	8	86	3L	8620819	8627689	ATTGTGAATCAGCCCTACC		59	8627739	8627757	CAAGTAGGACTCTGTCGTG		59	NA	
Drosophila melanogaster	50	CG2812	FBgn0034931	FBtr0072140	3	1	1	126	2R	19813621	19813639	ATCTACATCACAGACTGCG		59	19813729	19813812	GTATCGTTTGATCCTGCGA		59	NA	
Drosophila melanogaster	50	CG34197	FBgn0085226	FBtr0112390	1	1	1	60	2R	15289466	15289486	ACTTCAGAGGAACTATCAGAG		58	15289426	15289445	CACCTTCATCAATTAACCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33958	FBgn0053958	FBtr0114576,FBtr0099994	3	2	2	80	2R	14074502	14074521	TCCATTAATCGTGGATTGCT		59	14074345	14074459	AACTAGGTATCGCCATACG		58	NA	
Drosophila melanogaster	50	Rho1	FBgn0014020	FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216	2	7	7	82	2R	11993293	11993373	CACAATTCGGGATCTAGCA		59	11993419	11993437	AGGCATTAATCTTCTCGGC		59	NA	
Drosophila melanogaster	50	CG7220	FBgn0033544	FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217	3	5	5	110	2R	6624695	6624713	CCATGTTGAGTAGTTGTCG		58	6624787	6624870	CAGAATCATCGTGGTACCA		59	NA	
Drosophila melanogaster	50	gem	FBgn0050011	FBtr0089758,FBtr0089759	3	2	2	97	2R	6023162	6023250	TGACATGGACGATTATAGCC		59	6023310	6023328	TTGAAAGATAGGCCGTGAG		59	NA	
Drosophila melanogaster	50	CG34141	FBgn0083977	FBtr0110980	1	1	1	127	2R	5150165	5150183	AACAGAACAGGATGTCGAC		59	5149998	5150016	GTTTGTTAAGAGCCCTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995	1	9	9	157	2R	3355133	3355208	AGAAGTTGTCATCAGCTCG		59	3354994	3355012	GTAGTAGTTGGTCAGCACC		59	NA	Nonspecific
Drosophila melanogaster	50	CG3358	FBgn0033117	FBtr0086166,FBtr0114532	2	2	2	63	2R	2811957	2811975	CTAATAGACGGACGCTGTG		59	2812068	2812086	TGATTCCGGCAATAGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pld	FBgn0033075	FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997	2	6	6	80	2R	2141752	2142360	ACATTCAGGGTTACTTGGT		58	2142404	2142422	CCTCCTTACTAGTTCCAGG		58	NA	
Drosophila melanogaster	50	TpnC4	FBgn0033027	FBtr0086075	2	1	1	83	2R	1394209	1394279	GGAACAATTGAGAATCCTTAGG		58	1394147	1394167	CTAGATACATCAGCATGTTCG		58	NA	
Drosophila melanogaster	50	CG17082	FBgn0039994	FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289	1	6	6	87	2R	637011	642015	TTGAACAAGGGTTAGAGGT		58	642066	642084	AGTTGTACAATCGCTTCAG		57	NA	
Drosophila melanogaster	50	wor	FBgn0001983	FBtr0080740	3	1	1	60	2L	15424609	15424627	GAGGATCAGGAGAATCAGG		58	15424567	15424585	AGTACAGATCATTGCTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5945	FBgn0032494	FBtr0080450	1	1	1	60	2L	13240879	13240897	GCAAACGGAATATTTGCAG		57	13241513	13241533	ACTGATTAGCCACATTCAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ca-beta	FBgn0015608	FBtr0080218,FBtr0080217,FBtr0080220,FBtr0080219	1	4	4	60	2L	11165752	11165771	GCTAAGCTAGACAACATTCG		58	11165645	11165664	TTGTGCCATACAGTCTTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17292	FBgn0032029	FBtr0079648	1	1	2	102	2L	8372615	8372694	AAACAAATCCAGGCTCCTC		59	8372887	8372905	GATATCGCTATCTGCCACC		59	NA	
Drosophila melanogaster	50	Gr28b	FBgn0045495	FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458	3	5	5	118	2L	7455130	7455212	TTGTATTTCACGATCAGCG		58	7455030	7455049	TTATTGAAGGTCTCACAGCA		58	NA	
Drosophila melanogaster	50	CG15423	FBgn0031580	FBtr0077506	1	1	1	60	2L	4006165	4006183	GAAGGCCAATTGTAGAGGT		59	4006207	4006225	ATCTCAATCACTGGTCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eno	FBgn0000579	FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905	2	4	5	84	2L	1727657	1727676	TTAAATTTGTGCAGATCCGC		59	1726602	1726620	GAGTCGTAGATTTGACGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Myb	FBgn0002914	FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169,FBtr0074173	3	5	5	88	X	15749880	15749899	AACCAAGGTCTATAATCGCG		59	15749747	15749829	GTCCAAGTTGACTCTTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7065	FBgn0030091	FBtr0071299	2	1	1	115	X	9038971	9040049	ACCTTCAAAGGTACCAACG		59	9040128	9040146	AAAGCATTGGCCAATTTGG		59	NA	
Drosophila melanogaster	50	Hexo2	FBgn0041629	FBtr0071249	2	1	1	192	X	8605964	8605982	CTACCGACTGATTGTGTCC		59	8606138	8606226	GATTCGGGATTCCAGTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CBP	FBgn0026144	FBtr0071053,FBtr0071052	1	2	2	117	X	7235527	7235615	CTTGTTTAAGGCTGTGGAC		58	7235696	7235714	TATCACAGCGAATGAAACG		58	NA	
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070765,FBtr0070767,FBtr0070769,FBtr0070766	1	7	7	80	X	5270149	5270167	ACAGATCTCATCTGGATGC		58	5270207	5272346	TCTTCCATATACCTAGGGTAGTC		59	NA	
Drosophila melanogaster	50	CG15912	FBgn0029712	FBtr0070677	3	1	1	60	X	4443599	4443618	TTCATTCTGACTTCCTACGA		58	4443641	4443659	GAATTTCGAAGATACCGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14810	FBgn0029589	FBtr0070374	3	1	1	79	X	1714144	1714224	TCCATTTCGAAGAACAAGAG		57	1714084	1714102	TTCATCCCATTGGACTTGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG32813	FBgn0052813	FBtr0070224	2	1	6	181	X	1285417	1285435	AAATCGAATACTGGCAGAC		57	1285658	1285676	TATCGAGATGATGTCGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14632	FBgn0029538	FBtr0070192	1	1	2	67	X	787287	787305	CACAGGTCCAAGAATCAGG		59	786652	787256	CACGAGAATAGCGTTTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41587	FBgn0085711	FBtr0114160	1	1	1	60	U	7489897	7489915	ACAGTTGAGTGAAGTGACC		59	7489939	7489957	TCTGTTAGCGGTTAACTGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fer2LCH	FBgn0015221	FBtr0085622,FBtr0085623	2	2	3	93	3R	26214617	26214931	CACTGGAATAAACCGTCGA		59	26214986	26215006	CAATATTCATCATCCTTGGCC		59	NA	InUTR
Drosophila melanogaster	50	CG5246	FBgn0038484	FBtr0083405	1	1	1	60	3R	12962263	12962281	TCGAAGATCCATTGCAGTC		59	12962305	12962323	TGTGGATCAACGCTATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ea	FBgn0000533	FBtr0083083	3	1	1	113	3R	11155236	11155254	GAAGACCAAGATCGACGAG		59	11155393	11155413	GTGATCACATATCTTGTGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9492	FBgn0037726	FBtr0082100	2	1	1	80	3R	5496612	5496630	CTACTCCAATCGCATTCTC		57	5496462	5496568	CAGATTTCATCGTCTGCTG		58	NA	
Drosophila melanogaster	50	CG18268	FBgn0037520	FBtr0081772	2	1	1	106	3R	3628930	3629011	TTAATATGGCTCTTAGCCAGAG		59	3628845	3628863	TTCACAATGTTTGCTCAGC		59	NA	
Drosophila melanogaster	50	rn	FBgn0003263	FBtr0081593	1	1	2	150	3R	3121508	3121526	ATGCCAAAGACATAAGCGA		59	3118151	3120142	AGAAAGTGACCTTTCTGCA		59	NA	
Drosophila melanogaster	50	CG13247	FBgn0036979	FBtr0078184	1	1	1	164	3L	20364376	20364463	CTTTAAAGGCAAGTCCCTG		58	20364591	20364609	GTCCACTTAGTGTTCTGGA		58	NA	
Drosophila melanogaster	50	CG6597	FBgn0036967	FBtr0074838,FBtr0074837	3	2	2	99	3L	20296362	20296381	TACTATTAGCGACAACATGG		57	20296443	20300946	CAATCTGATATGGCGTCTG		58	NA	
Drosophila melanogaster	50	CG17286	FBgn0027500	FBtr0075363	3	1	1	149	3L	16587092	16587171	GTGTCCAATTCTGTCTTGG		58	16586961	16586979	CACGTTACTTTCTGGTTCC		58	NA	
Drosophila melanogaster	50	CG30125	FBgn0050125	FBtr0086595	3	1	1	84	2R	14982919	14983033	TTTGGTACAACTCATCGGA		58	14982853	14982872	TTTATGATAATCAGCCCGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30088	FBgn0050088	FBtr0087280	2	1	1	139	2R	11579092	11579110	CAGGGTGGATCTTGTTCTC		59	11579212	11579292	TGTATGTGCACATTAAAGCG		59	NA	
Drosophila melanogaster	50	CG4670	FBgn0033814	FBtr0087760	2	1	1	60	2R	9121659	9121680	CAAATTCAAGATTGATCCGACC		59	9121620	9121638	AATTTCACCTTTGCGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30378	FBgn0050378	FBtr0088854	1	1	1	60	2R	3838350	3838368	GAGAAGATGTCCGAAGAGG		59	3838389	3838410	CATCTTTGTCCTGATCAATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp9b2	FBgn0015039	FBtr0089055	2	1	1	116	2R	3018193	3018211	GGAACCCAGAAAGTTTGAC		58	3018035	3018114	GCATATCGATTTCCTATGCA		57	NA	
Drosophila melanogaster	50	debcl	FBgn0029131	FBtr0086108	2	1	1	283	2R	2537066	2539495	ATGGATATCATCAACCAGGG		58	2539796	2539814	ACTAGGTTGAGCAACATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CR31808	FBgn0062978	FBtr0080943	1	1	1	102	2L	16715854	16715872	TTTCTAGAGCGTTTCGGTC		59	16705789	16715788	GCGTAATATGCAAGTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34163	FBgn0085192	FBtr0112354	2	1	1	62	2L	11988516	11988534	CTGAAATCGGGTGTATCCT		58	11988559	11988578	GTTGAGTCGTTCGATTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	abo	FBgn0000018	FBtr0080168	1	1	1	60	2L	10974630	10974648	TCGTATGTGTTCTTTCTGG		57	10974588	10974607	GCAGGATAAGTCTATCTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7329	FBgn0032271	FBtr0080131	2	1	1	121	2L	10630060	10630137	ATATGACCATGTTCCCTGTG		59	10629958	10629978	CTTGGATTCGTAATCGTACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13134	FBgn0032182	FBtr0079968	1	1	1	174	2L	10097806	10097824	AATTTCCATCACTTCGACG		58	10096921	10096939	ATTTGCTGGCATTAACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mir-iab-4-5p	FBgn0082170	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:V3b:92Bb	FBgn0012004	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:MeU2-A31	FBgn0086076	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Akh	FBgn0004552	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-3	FBgn0046822	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30198	FBgn0050198	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CR33963	FBgn0053963	FBtr0100004	1	1	1	60	X	12553619	12553640	CTTGTTTCTCGTGTATCTTGTG		59	12553660	12553679	GAATGTAAGTTGACCACTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41478	FBgn0084038	FBtr0111180	1	1	1	194	X	22077362	22077380	ATAGTATGCATAGCGACGC		59	22075317	22076939	TAAATGCAAATCTGGGCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14617	FBgn0031191	FBtr0100652,FBtr0100651,FBtr0077352	3	3	5	129	X	21887458	21887783	GATTGCTTCAACAGCTCTG		59	21887874	21887894	TGTTTGAGGAGTAGTTTGGTC		59	NA	InUTR
Drosophila melanogaster	50	DIP1	FBgn0024807	FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370	3	4	4	170	X	21497272	21497350	TTCTTTGCATTATGCGTCC		58	21497120	21497138	GAGAGTTGCACACTTTCAC		58	NA	Nonspecific
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210	3	5	8	87	X	21247686	21250626	ACATGACGCTTATGAAATGG		58	21250676	21250694	ACAAAGTGGCCATAGAAGG		59	NA	
Drosophila melanogaster	50	unc	FBgn0003950	FBtr0077259	2	1	1	148	X	20983986	20984067	ATAGAAACCAAGCTCCTGC		59	20983856	20983874	TTGAGGTACCGTTTCATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	D2R	FBgn0053517	FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461	1	4	5	80	X	19905587	19920746	TACTTTCTGGTAAATGGAGC		57	19905526	19905545	AGTAGAGCATATCACATCCA		57	NA	
Drosophila melanogaster	50	Mer	FBgn0086384	FBtr0074754	1	1	1	109	X	19586340	19586359	ACGGAGTAAACTACTTTCCT		57	19586191	19586209	CTTTGGCGTTAGCTTATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14215	FBgn0031052	FBtr0074746	1	1	1	81	X	19548336	19548490	CCACATTCTCTAAGATTGCC		58	19548534	19548552	CAGTCGTTAAGCAAAGCTC		59	NA	
Drosophila melanogaster	50	CG14211	FBgn0031044	FBtr0074741	2	1	1	82	X	19518476	19518495	AAACTTTAGCTGGATCAACG		58	19518605	19518623	CCACCTTGGAAGGTATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14200	FBgn0031023	FBtr0074721	3	1	1	94	X	19404261	19404279	TTTATCCCTTCGAATGCGA		59	19405171	19405189	GTCCTCTGAGAACTTGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7326	FBgn0030970	FBtr0074653	2	1	1	60	X	18756516	18756536	TATGAGAACGAGGATCAACAC		59	18756476	18756495	TTTGATCCGTAAACACATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074571	3	1	6	100	X	18286942	18298034	CGAGAACTTGGTCACAGAG		59	18286786	18286878	GACTTGTACTCTGCCAAGG		59	NA	
Drosophila melanogaster	50	CrebB-17A	FBgn0014467	FBtr0074555,FBtr0074556,FBtr0074554,FBtr0112878	2	4	7	202	X	18269409	18269883	CTACAACACCAACAACAGC		59	18270049	18270067	GACAGTAGAGCTCCTTGAG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG8661	FBgn0030837	FBtr0074444	2	1	1	60	X	17178268	17178288	AAATCCCTAAAGATCGCTCTG		59	17178228	17178246	CCACCCACTTGATTATGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ppk28	FBgn0030795	FBtr0100474,FBtr0074335	3	2	2	83	X	16701917	16701936	GCACTTCTACTACATGACCA		59	16701980	16702063	CCCGTATTAGACAAGAATTCG		58	NA	
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211	3	5	5	113	X	16178691	16178711	CTCTATGTCCAGGTCAATCAG		59	16178784	16179064	AAATGCATAGCCTACGTAGTC		59	NA	
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211	3	5	5	113	X	16178691	16178711	CTCTATGTCCAGGTCAATCAG		59	16178784	16179064	AAATGCATAGCCTACGTAGTC		59	NA	
Drosophila melanogaster	50	Nipsnap	FBgn0030724	FBtr0074258,FBtr0074257,FBtr0074259	1	3	3	277	X	15965372	15965390	TCTTAGCTTGATGCAGGAG		59	15964887	15965071	GCAGAGATTTGTAACACCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	eIF5	FBgn0030719	FBtr0074149,FBtr0074144,FBtr0074148,FBtr0074147,FBtr0074146,FBtr0074150,FBtr0074145	2	7	7	129	X	15882572	15882664	CTGTTCGATCACAAGAATGAG		59	15882463	15882481	AATTGGTCTCCGGATTGTC		59	NA	
Drosophila melanogaster	50	eIF5	FBgn0030719	FBtr0074149,FBtr0074144,FBtr0074148,FBtr0074147,FBtr0074146,FBtr0074150,FBtr0074145	3	7	7	131	X	15882571	15882661	TTCGATCACAAGAATGAGC		57	15882458	15882476	AGTTAAATTGGTCTCCGGA		58	NA	
Drosophila melanogaster	50	CG8974	FBgn0030693	FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186	2	5	5	211	X	15688455	15688537	GATCCACGTAACAAAGTTCC		58	15688198	15688216	TGTTCATCCTCGTATTGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15645	FBgn0030657	FBtr0089701,FBtr0089702	2	2	2	60	X	15471753	15471772	GAGATCCAGAAGTTGTTGGA		59	15471712	15471733	TCTTCATTCGGATGAGATTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9514	FBgn0030592	FBtr0073980	1	1	1	153	X	14789821	14789840	GCTGTTGTCGTTATATTTGC		57	14782403	14782423	GTAGAGCATCGTATTTAGCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9522	FBgn0030587	FBtr0073986	2	1	1	60	X	14741671	14741689	TCAAGGCCATTGGAATACC		59	14741629	14741649	TGATCGAACATTCTCTTACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32613	FBgn0052613	FBtr0073887	2	1	1	60	X	13845392	13845410	TCTTCGCTATGGCTTAGAC		58	13845350	13845369	ACTGAATGACTGACAAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15211	FBgn0030234	FBtr0112977,FBtr0073376,FBtr0112975,FBtr0112976	3	4	4	188	X	10667186	10671999	AAATTGTGGAGTTTGTGCTG		59	10672150	10672250	TCAGCTCCGAGAATATCCA		59	NA	
Drosophila melanogaster	50	CG15249	FBgn0030161	FBtr0112966	3	1	2	103	X	9782871	9782889	ACAATTTAGCGATCCAGGT		58	9782720	9782738	GTTCCTCGCTGTTACTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1354	FBgn0030151	FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386	2	4	4	98	X	9674840	9674858	CCGAATACGATTCGATGCT		59	9674919	9675204	TCAAGGCCTCAATATCATGG		59	NA	
Drosophila melanogaster	50	otu	FBgn0003023	FBtr0071236	2	1	3	142	X	8381021	8381625	TGACTATAACTTTAAGGTCCCG		59	8380900	8380918	AAGACTTGTTGGCCTTACC		59	NA	
Drosophila melanogaster	50	Trxr-1	FBgn0020653	FBtr0071168,FBtr0071167,FBtr0071169	2	3	3	104	X	8140380	8140398	AAAGATCAAGCCAGACTGG		59	8140466	8140554	TACTCCACTTTCTTGTCGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG15336	FBgn0030009	FBtr0071156	1	1	1	60	X	8042078	8042097	GATAATCGGCGACTTATGTG		58	8042120	8042138	GCAGATTCCAATAGATGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubc-E2H	FBgn0029996	FBtr0071114,FBtr0071112,FBtr0071113	3	3	3	64	X	7983664	7983684	TGTGAACAAGATCTACCATCC		59	7983620	7983638	TGATAACATCCAGGCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Act5C	FBgn0000042	FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822	3	4	4	153	X	5797300	5797318	GATGAAGATCCTGACCGAG		59	5797435	5797453	GTAGGACTTCTCCAACGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17764	FBgn0029751	FBtr0070757	1	1	1	119	X	5200833	5200851	TCTTCAGTCAGACAATGCC		59	5200732	5200752	CAGATTCCAGATTGAACTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070740	1	1	4	65	X	4959928	4959946	CCAAACAATAGTCTCGACG		58	4960134	4960152	CTCGTCGTACTCAATGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	SIP3	FBgn0061196	FBtr0070727	2	1	1	60	X	4854543	4854561	AATATGTTGCGCAGTTTGG		59	4854501	4854519	GAATATCGGCAATTCGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15240	FBgn0029684	FBtr0070628	2	1	1	79	X	3804821	3804839	CATCAAGTACTGTTCCCTG		57	3804760	3804778	GTTGCTGATTCTTGAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yin	FBgn0015565	FBtr0070632,FBtr0070633,FBtr0070631	1	3	3	174	X	3759040	3759114	GATGCCAACTAAAGCTGTG		59	3758884	3758903	CAAAGATCCTGCGTTAATGG		59	NA	
Drosophila melanogaster	50	Rala	FBgn0015286	FBtr0070584,FBtr0070583,FBtr0070582	2	3	3	97	X	3603937	3603956	GAGATAACTACTTTCGCAGC		58	3602942	3603880	GATTTGTTCTCTGAATTCCTGG		59	NA	
Drosophila melanogaster	50	gt	FBgn0001150	FBtr0070460	3	1	1	111	X	2322216	2322234	CTTCTGCAAACCTTTGCTG		59	2322123	2322141	GAACGTCTATCTGCATGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4199	FBgn0025628	FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333	2	4	6	110	X	1965424	1965442	CAAGGAGTACAAGACCACG		59	1962396	1962414	GACATGGTTGTACTGGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14801	FBgn0024988	FBtr0070305,FBtr0070304,FBtr0070306,FBtr0070307	2	4	4	140	X	1737990	1738010	GTTTGATCATATCCACAAGCG		59	1738112	1744662	AGGAGTTTGTCTTCGATGC		59	NA	
Drosophila melanogaster	50	CG14786	FBgn0027794	FBtr0070230	2	1	1	60	X	1352397	1352416	CAAGTTCTGAAGGTTCAGGA		59	1352356	1352376	TGATGTGTAGGTCGAATATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3056	FBgn0024987	FBtr0070215,FBtr0070214	3	2	2	106	X	1265711	1265729	CAATTACTTGCCACAGGAC		58	1265798	1265957	TATATCCGGTCTTGAAGTCG		58	NA	
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0070176	1	1	5	151	X	935428	936303	GATTGACAGATACGATGTGC		58	936417	936435	TGTACAGAAACAGGTACCG		58	NA	
Drosophila melanogaster	50	CG5273	FBgn0040382	FBtr0070136,FBtr0070135	3	2	3	289	X	654397	654415	CTACATACTATCCGTCCGC		59	654821	654839	GATTATGCGATCCTGACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	svr	FBgn0004648	FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070082	1	5	7	104	X	396960	398709	AACTTTGATGGCAACTTCC		58	398777	398795	GTGTTCGTATTTAGTCGGG		57	NA	
Drosophila melanogaster	50	CG40971	FBgn0085547	FBtr0113960	1	1	1	60	U	8267568	8267586	TGGAAGACTTCAGAAGACG		58	8267526	8267544	CTTCGAGCACTAGATACGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41272	FBgn0085590	FBtr0114034	3	1	1	75	U	477450	489216	TGTACTCGTTCCTTCTTATTGG		59	489252	489270	TGTTGCAATTACCTGTCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	sphinx	FBgn0083990	FBtr0111044,FBtr0111045	1	2	3	60	4	997418	997439	TACATACTGTCAGTATCGAAGG		58	997458	997478	GTTGTACTCACCTGGATAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156	1	8	10	80	4	115558	115579	ACGAGATAACTATGGTTACGTG		59	115618	120041	ATATTATTGCCTCCCGAATCC		59	NA	
Drosophila melanogaster	50	Or85e	FBgn0026399	FBtr0081896	3	1	1	60	3R	4460301	4460320	TTCGAGCTCCTAATGTTCAC		59	4460260	4460279	CAGATCGAATACTATGCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	1	14	14	90	3R	27691897	27691915	ATACTGCACCAGATCTTCC		58	27691743	27691843	GATATTGGATGAGGGCCTG		59	NA	
Drosophila melanogaster	50	CG1638	FBgn0039855	FBtr0113315	1	1	1	84	3R	27416804	27416822	TCAACTTTAGAGGCTTCGC		59	27416930	27416948	TTCAGGTGCCTATTACAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mRpL32	FBgn0039835	FBtr0085759	2	1	1	84	3R	27079010	27079084	AGTTCTTTGTCCCTTCTGC		59	27079132	27079150	ATCTAGACCGAGTGTCTCC		59	NA	
Drosophila melanogaster	50	CG33920	FBgn0053920	FBtr0091924	1	1	1	64	3R	26870353	26870371	TTTCATTAGGCCCTTCACC		59	26870250	26870268	TTTCGATCACGAGATCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	zfh1	FBgn0004606	FBtr0100269,FBtr0085701,FBtr0085702	1	3	3	195	3R	26611645	26611663	CACAAATACGAGCATTCCG		59	26611890	26611908	TGCAATAGGAATACCGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	aralar1	FBgn0028646	FBtr0085695,FBtr0085692,FBtr0085694,FBtr0085693	2	4	4	80	3R	26274281	26274365	CTAGTTTCGGTAACTGAGGG		59	26274220	26274238	CAGTTCCATGTTGTTCAGC		59	NA	
Drosophila melanogaster	50	CG9737	FBgn0039758	FBtr0085639	2	1	1	80	3R	26068275	26068296	ATGATCGTCATATCCTAACAGC		59	26068152	26068234	AACGCACATGCTTTAATCC		59	NA	
Drosophila melanogaster	50	RpS7	FBgn0039757	FBtr0089423,FBtr0089425,FBtr0089422	1	3	4	69	3R	26032436	26033825	TTGAACACAAAGTCGACAC		58	26032385	26032403	AATTCGAAGGTAACATCGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG31025	FBgn0051025	FBtr0085587	3	1	2	119	3R	25953816	25953900	AGACCCTCAAAGAAGATGC		59	25953715	25953733	GATCAATGGAAGAGGTGGA		58	NA	
Drosophila melanogaster	50	alph	FBgn0086361	FBtr0085446,FBtr0085442,FBtr0085445	1	3	5	165	3R	25422972	25422990	AGTCTAGCAAGATAACCGA		57	25423191	25423899	TAATGCGTTGGACTTTCAC		58	NA	
Drosophila melanogaster	50	Cnx99A	FBgn0015622	FBtr0110909,FBtr0085438,FBtr0085437	3	3	4	116	3R	25142527	25142547	CGATATTCTCTTCGACAACCT		59	25142077	25142449	ACGAATGAGTCCGATTCAC		59	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	3	8	8	148	3R	24962000	24962021	GCACAATCATACGTATTTCAGG		59	24962129	24962212	AGTAGGGCTTATCATTGGTG		59	NA	
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	2	7	8	81	3R	24639657	24639675	TACTGCTACGGATATTGGC		58	24639719	24640879	GCTCAAACACCTTATAGCAG		58	NA	
Drosophila melanogaster	50	CG34354	FBgn0085383	FBtr0112564	1	1	1	118	3R	24027966	24052463	TGGAGAAATATCAGACTGCAG		59	24060809	24060827	CATTCATTGCAGTGATGGC		59	NA	
Drosophila melanogaster	50	CG4849	FBgn0039566	FBtr0085257	2	1	1	128	3R	23790245	23790322	TAAACAAGATTGATCGCCTC		57	23790472	23790490	AGAGATTGTCATCTGGAGC		58	NA	
Drosophila melanogaster	50	CG4884	FBgn0039565	FBtr0085264	2	1	1	85	3R	23783412	23783430	CGTCAATGGAAAGAAGCTG		59	23783293	23783311	TCGATTGACTAAAGCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5508	FBgn0027579	FBtr0085251,FBtr0085249,FBtr0085250	1	3	3	62	3R	23755849	23755867	GAAGTTCGAGTACCGACAG		59	23755951	23755969	ATTGCATGCTTCAGTACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12879	FBgn0039540	FBtr0085218	1	1	1	60	3R	23521507	23521525	GACCAGTGTCTACTGTCTG		59	23521549	23521567	ATAGCTCGAAATCTTTGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His2Av	FBgn0001197	FBtr0085062	2	1	1	63	3R	22693481	22693500	ATATTGGAATACCTGACCGC		59	22694099	22694117	CTTTCAAGTCCTTCGATGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	HLHm5	FBgn0002631	FBtr0084979	3	1	1	65	3R	21854947	21854966	ACTTCTGTTACAACCTCCAC		59	21854901	21854919	GTTATCGCTGTGGTATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4774	FBgn0039360	FBtr0084931,FBtr0084929,FBtr0084930	2	3	3	80	3R	21512087	21512106	ATATGTTATAGTCCAGGGCG		58	21511695	21512044	TGTCCATCCAACAGATCTG		58	NA	
Drosophila melanogaster	50	CG4673	FBgn0039348	FBtr0084893,FBtr0084892	2	2	2	81	3R	21448138	21448156	TTCGATCAATATTCAGCCG		57	21448015	21448094	CCAACCAATCTTCTTCAGTC		58	NA	
Drosophila melanogaster	50	CG10550	FBgn0039321	FBtr0084859,FBtr0084857,FBtr0084858	1	3	3	86	3R	21132485	21132504	TGCTGAAGTATGGATTCTGG		59	21132358	21132376	TCATATTGGCGTCCTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100638,FBtr0100637	1	3	17	115	3R	20508113	20512918	AGGGCGAAGACATATTGTG		59	20512997	20513015	GGAGAAAGACCACTTCGAC		59	NA	
Drosophila melanogaster	50	CG13613	FBgn0039193	FBtr0113278	1	1	1	79	3R	20191749	20191768	GGTCACCCAAGTTATAACCT		59	20191946	20191964	TATCACGATAATGCTGCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13606	FBgn0039161	FBtr0110794	3	1	2	90	3R	20009628	20009646	TACTTTAGCACCACCTTCC		58	20009700	20009718	AGAAGTATCTAAACCGCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5991	FBgn0026576	FBtr0084537,FBtr0084536,FBtr0084538	2	3	3	60	3R	19878787	19878805	GATTCTTCTCCTACACCGC		59	19878829	19878847	TCCATGTAGATTTCGACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gdh	FBgn0001098	FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498	3	4	4	98	3R	19763339	19763461	AAGCTAAGATCATTGCCGA		59	19763259	19763277	TGTACAGATCGGGAATGAC		58	NA	
Drosophila melanogaster	50	CG13837	FBgn0039042	FBtr0084345	3	1	1	60	3R	18870069	18870088	CCTTATATGGTCTGCTACGA		58	18870110	18870129	CTAGATGAGCAGGAGTACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7023	FBgn0039025	FBtr0084310	2	1	2	160	3R	18601042	18601060	AATGAGATCATACTGGCCG		59	18601364	18601382	GTCTCGGACGTAAGTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5315	FBgn0038984	FBtr0084283,FBtr0084284,FBtr0084282	2	3	3	83	3R	18370411	18370492	CTAATTCTGATGGGCCTCC		59	18370346	18370364	AAACTTTCCAGGGAACCAG		59	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0110938,FBtr0110939,FBtr0084021,FBtr0084022	1	4	12	105	3R	17027123	17027417	TATATGGTAGCATGCGTCG		59	17027486	17027504	TAGATGTCGTCGAGATCGT		59	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0112915	1	11	12	80	3R	17033375	17036516	ATCTATCAGATCTGGAAGAGG		57	17036558	17036576	TGGGTATCAGATCATAGCA		57	NA	
Drosophila melanogaster	50	AnnIX	FBgn0000083	FBtr0089519	2	1	4	279	3R	16894413	16894431	AATACGAGAATCTGTCGGG		58	16894734	16895045	GATGTATCGCCCTTGATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4335	FBgn0038795	FBtr0083894	1	1	1	60	3R	16232663	16232684	CTCAGGAATTTGTTCAACTCAG		59	16232624	16232642	GGGATGGTATTAAACACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5077	FBgn0038786	FBtr0083878,FBtr0083880,FBtr0083881,FBtr0083879	2	4	4	194	3R	16148680	16148698	TCCATCGAGACATTATCCC		58	16148855	16148946	CAAAGCAAGTTGCTTAATGG		58	NA	
Drosophila melanogaster	50	CG6184	FBgn0038725	FBtr0083802,FBtr0083800,FBtr0083801	1	3	3	87	3R	15479275	15479357	CCAAGGAATTTAAGGACTACGA		59	15479209	15479227	TACACCAGTTCGTACTCCT		59	NA	
Drosophila melanogaster	50	CG14302	FBgn0038647	FBtr0083673	3	1	1	191	3R	14558509	14558527	CTTCAACCTGCTGTTTAGC		59	14558682	14558700	TAGATGGTCGACGTTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14300	FBgn0038643	FBtr0100288	3	1	1	130	3R	14519218	14519236	GATGAGTCCGAGATTGGAC		59	14519106	14519124	TTGAGCAGATGCATGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15803	FBgn0038606	FBtr0083587	3	1	1	60	3R	14180906	14180926	TATACCAACTAAGCTCCTCTC		58	14180866	14180885	CGGATTCTGGAAGAGATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tinc	FBgn0038554	FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769	1	4	4	82	3R	13678779	13678797	TCAATCTGCAGATTGTCCT		58	13678843	13683517	GTTGCCGACCTTAAATACG		58	NA	
Drosophila melanogaster	50	CG5873	FBgn0038511	FBtr0083442	1	1	1	131	3R	13261667	13261685	GTACCATCAGTTTGGTGAG		57	13261780	13266664	TTGTACGGGTTTAAAGTGC		58	NA	
Drosophila melanogaster	50	MESK4	FBgn0043069	FBtr0083367	3	1	1	84	3R	12815101	12815119	ACACTTTAATCCTGGACCG		59	12815166	12815249	TTGTTGATCCACAAGATCCT		58	NA	Nonspecific
Drosophila melanogaster	50	CG31275	FBgn0063261	FBtr0083346,FBtr0083345	2	2	2	60	3R	12576907	12576926	ACTATTGGGTATGTGGTGTC		59	12576866	12576884	TATCGAAGGATGTTTCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14888	FBgn0038442	FBtr0083298	3	1	1	86	3R	12378114	12378132	TAACCACAACCATCAAGGG		59	12378181	12378278	AAATCTGTGTATCAGGTGGT		58	NA	
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204	1	6	8	163	3R	11782022	11785052	GACTGATGAGGAACAATGG		57	11785179	11785197	TTGATATTGTCGGTTCGTC		57	NA	
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083209	2	1	8	124	3R	11779943	11780309	TCAAATCGGACAGGTTACC		59	11780394	11780478	CGAGAATGGTATTATCCTTGAC		58	NA	
Drosophila melanogaster	50	alpha-Man-IIb	FBgn0026616	FBtr0083179	3	1	1	173	3R	11647813	11647891	GTTTCCAGTATCATGAACGT		57	11648027	11648045	GATCCAGCATAACCTCCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5038	FBgn0038324	FBtr0083089	1	1	1	60	3R	11177376	11177395	ATGAAGTTCCTAAACCTCCT		57	11177418	11177436	GAATCAATCGCCACATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	btsz	FBgn0053555	FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530	3	5	5	111	3R	10634167	10634187	GCAGTACAACTATAAGCTGAG		58	10634011	10634096	TAGATACACCTTAACGTAGGG		58	NA	
Drosophila melanogaster	50	CG9925	FBgn0038191	FBtr0082876	2	1	1	81	3R	9787987	9788005	CTAGTGATGTTTCCGTTGG		58	9787859	9787943	TCCTTACTCAATATCTCGCC		58	NA	
Drosophila melanogaster	50	Rbp4	FBgn0010258	FBtr0082853	1	1	1	81	3R	9480565	9480583	TTCAAGCCAGCTAAATCTC		57	9480415	9480520	CTTAGATACCGTAGGGTGG		58	NA	
Drosophila melanogaster	50	CG14369	FBgn0038159	FBtr0082789	1	1	1	138	3R	9418227	9418245	CATTGGAGCAGGAAATTGG		59	9418107	9418125	TATGCCCAAGAATAGCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14394	FBgn0038079	FBtr0113227,FBtr0114499	1	2	6	156	3R	8522009	8522181	CATAGTCATGCAGGTCCTG		59	8522298	8522319	GATGAACAGATTGATCATGGTC		59	NA	
Drosophila melanogaster	50	CG5509	FBgn0038054	FBtr0082633	3	1	1	60	3R	8278546	8278564	GGTCAGAAACTGAGTGACC		59	8278586	8278606	CGTACGGACTAAAGTTAATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34402	FBgn0085431	FBtr0112656,FBtr0112654	2	2	3	83	3R	8228195	8228269	CATTGGAAGTTGTGACCAC		58	8228314	8228334	TATCTGCTGAACTTTCGATCC		59	NA	
Drosophila melanogaster	50	CG10038	FBgn0038013	FBtr0082614,FBtr0082615	2	2	2	223	3R	8175080	8175156	TACTCTTGATTTGGTGGAGC		59	8174876	8174894	TCCATTCGTGCTTAGTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CoVa	FBgn0019624	FBtr0082473	1	1	2	186	3R	7645326	7645344	GATCTGTCATACCCGTGTG		59	7645560	7645578	TGAAGTACTTCTCGTAGCG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG5270	FBgn0037897	FBtr0082387,FBtr0082388	3	2	2	81	3R	7254514	7254532	AAGTTCTTGGACAAGTGTG		57	7254577	7254656	CTAGTCGAATCTGCTTCAG		57	NA	
Drosophila melanogaster	50	nocturnin	FBgn0037872	FBtr0113220,FBtr0113218,FBtr0113219	1	3	3	92	3R	7032967	7033089	CCTATCACAAACTCTCGGG		59	7033145	7033163	TGGACAATCAGGTACTTGC		59	NA	
Drosophila melanogaster	50	Ugt86Dg	FBgn0040253	FBtr0082377	3	1	1	60	3R	6990896	6990914	CTAAAGCTTTAGCCCAGGA		58	6990854	6990872	ATTACACCATGCTCACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0100455,FBtr0082254,FBtr0082255,FBtr0100454,FBtr0082253,FBtr0082256	1	6	6	89	3R	6417178	6419287	GAAGTCGACTCACTGATGG		59	6411627	6411647	GAAGTTATCGCATAACTCGTG		59	NA	
Drosophila melanogaster	50	CG34302	FBgn0085331	FBtr0112498	1	1	1	60	3R	5648961	5648980	AGTCAATGAGGACTATTGGA		57	5648920	5648939	CTGAAACATCAGCATGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ps	FBgn0026188	FBtr0111029,FBtr0111028,FBtr0111027	2	3	9	198	3R	5258550	5269739	ATTTCAGTTCCGGTGAGTC		59	5270868	5270886	GACATCTTGACCCTAGCAC		59	NA	
Drosophila melanogaster	50	CG33937	FBgn0053937	FBtr0091947,FBtr0091946	1	2	2	60	3R	5183234	5183252	AATAGATTCTCACTCGGCC		58	5183276	5183294	ACCGTCAACTGTACAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9740	FBgn0037669	FBtr0081984	2	1	1	61	3R	5083891	5083910	GAAGTCATGTCTCAAGTTCC		58	5083849	5083867	TAGCCTCCACCTTAATACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or85a	FBgn0037576	FBtr0081836	2	1	1	85	3R	4148571	4148590	TCATTCACAATGTTCAGCAG		58	4148635	4148710	CTTGGCCATCTTTATATTGGTG		59	NA	
Drosophila melanogaster	50	CG9636	FBgn0037556	FBtr0081805,FBtr0081804	3	2	3	105	3R	4068193	4068212	GGGACAATAAGATCGTATCG		57	4068005	4068126	CTACTGCTAGGTTGAATCTG		57	NA	
Drosophila melanogaster	50	lds	FBgn0002542	FBtr0081758	3	1	1	93	3R	3747546	3747865	GAATCGCTAAAGGACCTCC		59	3747921	3747940	TCATAAGCGATACCTTCAGG		58	NA	
Drosophila melanogaster	50	Mst84Da	FBgn0004172	FBtr0081584	2	1	1	299	3R	3191578	3191598	CCACCTTCAATAGTTAACACC		58	3191914	3191932	AGTATTCCGACAGGTTTCC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14605	FBgn0037486	FBtr0081600,FBtr0081601	1	2	3	82	3R	3044111	3044315	CCTGCTGATTTCTTTAACAAGG		59	3044050	3044068	GATCCCGACATCTGATTGG		59	NA	
Drosophila melanogaster	50	Ccp84Ab	FBgn0004782	FBtr0081692	3	1	1	75	3R	2528178	2528196	AGAGTACTCCCTGATCGAC		59	2528121	2528139	GTTGAATCCGTTGATGGGA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31286	FBgn0051286	FBtr0081682,FBtr0081683	2	2	2	96	3R	2467278	2467353	TTATGCTTGGAAACTGTCCA		59	2467409	2467430	CCTCTTTACTTCAAATCTGCAG		59	NA	
Drosophila melanogaster	50	CG17917	FBgn0037431	FBtr0081709	1	1	1	66	3R	2167824	2167842	TGTAATACACATCGGACCG		59	2168072	2168090	ACAATGTGCTGCTAAATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rm62	FBgn0003261	FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653	3	6	6	156	3R	1829624	1829748	AGGAGGAGAAATTGAAGACC		59	1829487	1829505	TTGTCACCGTGAATAGCTC		59	NA	
Drosophila melanogaster	50	CG1193	FBgn0037375	FBtr0078628,FBtr0078627	1	2	2	189	3R	1611780	1611995	AATACTCCAGGAAGCAGTG		58	1612148	1612166	GTATTTCGAGGTCAGGGTC		59	NA	
Drosophila melanogaster	50	CG31542	FBgn0051542	FBtr0078786	3	1	1	123	3R	1195951	1195969	GAAGAAGTGCGTCATTCAG		58	1196056	1196074	TTGGGAGTACTGTCATGTC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11739	FBgn0037239	FBtr0078915,FBtr0078913,FBtr0078916,FBtr0078914	2	4	4	80	3R	205702	205720	CAATCAGACATTCAACGCC		59	205764	205845	GAGGTAACTAGTTGCTGCT		58	NA	
Drosophila melanogaster	50	CG9791	FBgn0037232	FBtr0078904	3	1	2	82	3R	139481	139569	GACGTGATGGATCTCTATCG		59	139613	139632	ATTTCGTCCAGTTCCTTCTG		59	NA	
Drosophila melanogaster	50	CG1092	FBgn0037228	FBtr0111222,FBtr0078978	1	2	2	60	3R	93458	93476	GGATTGGAGCATGTACCTC		59	93500	93518	CGTGGAGTAGAAGTAGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32028	FBgn0062463	FBtr0076660	3	1	1	112	3L	8434322	8434340	CGCTGTGAAATTAACTCGT		58	8434228	8434247	TAAACTCCGCTTTACTTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Csp	FBgn0004179	FBtr0078495,FBtr0078493	3	2	3	187	3L	22263010	22264665	CACATCTGAATGAGGACGT		59	22264816	22264834	GTTTAGCGACGTATTCTCG		58	NA	
Drosophila melanogaster	50	CG32447	FBgn0052447	FBtr0078460,FBtr0078461	1	2	2	183	3L	21687566	21687584	TTCTGCTATTATCCTCCCG		58	21686807	21687419	GTCGTATAAACATGCCTGG		58	NA	
Drosophila melanogaster	50	CG7597	FBgn0037093	FBtr0078357,FBtr0078358	2	2	2	115	3L	21513430	21513511	TACGGACAGGTTTACAAGG		58	21513590	21513608	TTGATTTCACGAACAGCTG		58	NA	
Drosophila melanogaster	50	CG7202	FBgn0037086	FBtr0078393	1	1	1	60	3L	21484877	21484896	CTATGGAAGTGTCAGATCCG		59	21484836	21484854	CATTGATTCTTCGGAGGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10508	FBgn0037060	FBtr0078302,FBtr0078303,FBtr0078301	3	3	4	87	3L	21208529	21208548	CTATTATCGAACGAATGGCC		58	21208598	21208690	GTGACATAATCGGCTAGCA		59	NA	
Drosophila melanogaster	50	CG32425	FBgn0052425	FBtr0078205,FBtr0078202,FBtr0078203	3	3	5	165	3L	20505333	20505351	ATCATCAATGATGAGCGCT		59	20505480	20505633	AGATCACTGGTAGCTTTCC		58	NA	
Drosophila melanogaster	50	CG6259	FBgn0036740	FBtr0075201	1	1	1	103	3L	17613904	17613922	CTTGAAGGATACTCAGGCC		59	17613740	17613837	CTTGGATGTCCTCGATCTG		59	NA	
Drosophila melanogaster	50	TpnC73F	FBgn0010424	FBtr0089585,FBtr0089586	3	2	2	91	3L	17039495	17039513	TTCGATCACCAGAAGACTG		59	17039632	17039650	TCCAGGATCTTCTTGTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13022	FBgn0036679	FBtr0075299	1	1	1	60	3L	16931832	16931850	AGGACAAGACAGAATCCAC		58	16931790	16931808	CCACTGCTAGGTTATCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11905	FBgn0036678	FBtr0075305,FBtr0113174,FBtr0075300	2	3	10	196	3L	16922148	16922167	ATGGCTCCTAAGAAAGATGC		59	16921906	16921924	AATGAAATGCTGAAGGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32161	FBgn0052161	FBtr0075331	2	1	1	63	3L	16839993	16840011	GACACTTCAAGGCTACAGG		59	16840038	16840056	ACTAAGACGGGAATTGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9669	FBgn0036667	FBtr0075339	3	1	1	63	3L	16837870	16837888	TCATCGGAACCTTCTTCAC		59	16837825	16837843	TCCTTAGAGCTCTTTCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12486	FBgn0036541	FBtr0075533	1	1	1	60	3L	15849168	15849186	CCCACTGAGCATATCTACG		59	15849126	15849144	CTTTCGTACTTGTGACACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dcp2	FBgn0036534	FBtr0100528,FBtr0075539,FBtr0075538	1	3	4	85	3L	15815229	15815247	GTACTGTATCCTCGAAGCG		59	15815103	15815181	GCTGACAATCTTCTCATTGC		59	NA	
Drosophila melanogaster	50	CG33985	FBgn0053985	FBtr0100030	3	1	1	60	3L	15519572	15519590	TTCCACAGTTGTAATCACC		57	15519530	15519548	GACTGATGGTCGTAATGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eip71CD	FBgn0000565	FBtr0075553,FBtr0075552,FBtr0075555,FBtr0075554	2	4	4	69	3L	15505788	15505806	TCATAACCACTGAGATTGC		57	15505898	15505916	AACCTATACTTCTGGTGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13472	FBgn0036450	FBtr0075691	2	1	1	85	3L	14782305	14782430	GATGGAAGGTATTATGAGGCT		59	14782477	14782495	TCCTCATGGTTTCCATAGC		59	NA	
Drosophila melanogaster	50	CG32143	FBgn0052143	FBtr0075683	1	1	2	60	3L	14674941	14674959	TCTAGTTTCAGTCTTGCCG		59	14674983	14675001	AATCATAGAAGGACGCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13737	FBgn0036382	FBtr0075754,FBtr0075755	3	2	2	64	3L	13875755	13875773	ATGGAGACCTATTTGACGG		58	13875801	13875819	CTGTTGGGCTCAAATTTCG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13737	FBgn0036382	FBtr0075754,FBtr0075755	1	2	2	62	3L	13875757	13875775	GGAGACCTATTTGACGGAG		59	13875801	13875819	CTGTTGGGCTCAAATTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10743	FBgn0036376	FBtr0075814,FBtr0075813	2	2	2	102	3L	13507881	13507899	CTGCTATGAGGACAATTGC		58	13508023	13508044	CATCTTTAGGTTTAGCTCTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10089	FBgn0036369	FBtr0075822,FBtr0075823,FBtr0075820,FBtr0075821	1	4	4	135	3L	13462085	13462103	AAGATCTCGCACATCATCG		59	13461910	13461928	GTATGAAGTCGTTGCAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32118	FBgn0052118	FBtr0075889	1	1	1	60	3L	13091354	13091374	GCCATTGATGTGATACAACTC		59	13091395	13091414	GAAGACTACTAGGGTTTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11006	FBgn0027534	FBtr0075927,FBtr0075929,FBtr0114506,FBtr0075928	3	4	4	85	3L	12803755	12803840	TTGATGAAGATCGATGAGAAGG		59	12803886	12803904	AATGATAGAACGCCTGTGG		59	NA	
Drosophila melanogaster	50	CG10973	FBgn0036306	FBtr0100354,FBtr0075950	3	2	2	199	3L	12746676	12746694	AGTGTTTCCTGTGCTAGTG		59	12746435	12746513	TAACCATGTCTTCACACGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10632	FBgn0036302	FBtr0114612,FBtr0114609	3	2	4	177	3L	12533237	12533498	ATGTCTACAAGGCCAATCG		59	12531537	12531555	TTTACCCGGACATTCAGAG		58	NA	
Drosophila melanogaster	50	CG10646	FBgn0036292	FBtr0075972	2	1	1	82	3L	12496861	12496879	TTAACACCTCAGTACGGAG		58	12496797	12496815	AAGTGAACCTGATTGGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAP68F	FBgn0036257	FBtr0075997	3	1	1	90	3L	12134437	12134455	GTTTGATGATACCGAGCTG		58	12134572	12134647	CTCAAGTTCTGGATCTTCG		57	NA	
Drosophila melanogaster	50	Atg12	FBgn0036255	FBtr0089325	2	1	1	60	3L	12130500	12130518	CAAGAACTTGTACGAGTGC		58	12130540	12130560	ATTCTTGCAGTAGTAGAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10361	FBgn0036208	FBtr0076084	3	1	1	121	3L	11793263	11793281	ACAACTACTTAGGACTGGC		58	11793099	11793117	CTTGTGTATATCCTGCGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6024	FBgn0036202	FBtr0113164,FBtr0113165,FBtr0113166	3	3	3	91	3L	11752784	11752802	GCTAATCCTCATCGGACTC		59	11737115	11752729	GCGACTGCATGTAATAGTG		58	NA	
Drosophila melanogaster	50	CG32068	FBgn0052068	FBtr0113421	1	1	1	81	3L	10656762	10656782	GAGTACCAGAGCGATAATACC		59	10656825	10656905	TTTCCGAGCATGTGATCTC		59	NA	
Drosophila melanogaster	50	hay	FBgn0001179	FBtr0076253,FBtr0114599	2	2	2	116	3L	10626350	10626368	TTCATCTATGGTCCCACCT		59	10626504	10626523	CAAATCGAAACTGGTGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32063	FBgn0045770	FBtr0076286,FBtr0076287	2	2	2	60	3L	10459993	10460011	GAGGGTATGGAGAATGTGC		59	10460032	10460053	CAATACTTTGTAATGATCGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4452	FBgn0035981	FBtr0089493,FBtr0089494,FBtr0089495	3	3	3	184	3L	9361224	9361242	AGTGCGAACATTATCTGGG		59	9362076	9362094	TCTTGGACATCGGTATACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	bol	FBgn0011206	FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538	1	4	4	129	3L	9101077	9101095	ATACCCATGGATCAGTTCG		58	9100463	9100724	TGGTGGGTACATTCATTGG		59	NA	
Drosophila melanogaster	50	CG5144	FBgn0035957	FBtr0076523	1	1	1	60	3L	9041123	9041142	GCTGGAGAGTAAGATTTGTG		58	9041163	9041183	GTATTTACCCTTGTACTCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5288	FBgn0035950	FBtr0076553,FBtr0076555,FBtr0076554	1	3	3	80	3L	8977957	8977977	CTTCAACTCAGAAATCTCGAG		58	8977752	8977915	CTTTGGAAGCTCGATTCTG		58	NA	
Drosophila melanogaster	50	Prm	FBgn0003149	FBtr0076596,FBtr0076593,FBtr0076594,FBtr0076595	1	4	4	221	3L	8727222	8727349	CGAAGTCAAGAACTTGTCC		58	8727019	8727037	ATGAGGTTCTTCTGGTCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6416	FBgn0035917	FBtr0089564,FBtr0089566,FBtr0089565,FBtr0089562	2	4	8	86	3L	8623724	8627690	ATTCAATACCAACCCTACCG		59	8627739	8627757	CAAGTAGGACTCTGTCGTG		59	NA	
Drosophila melanogaster	50	Unr	FBgn0035895	FBtr0114592,FBtr0076661	3	2	2	85	3L	8429048	8429129	CATAGAAGGATGTGTAACTCG		57	8428983	8429002	GTTCATAGGTAATCACACCG		58	NA	
Drosophila melanogaster	50	CG34461	FBgn0085490	FBtr0112767	1	1	1	151	3L	8319406	8319424	CTACGGCATTAAGGATCCC		59	8319996	8320014	CATTGAAGCCATTGTGGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8044	FBgn0035829	FBtr0076765,FBtr0076764	2	2	2	139	3L	7968997	7969015	ATCAAGTCGTCGACTTCTC		59	7968876	7968895	GAATTCATGATGGAACTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8562	FBgn0035779	FBtr0076854	2	1	1	70	3L	7392425	7392443	CTCCTACGGCAACTATCTG		59	7392537	7392555	CCAGATCCTCCCAATTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10064	FBgn0035724	FBtr0076937	1	1	1	80	3L	6959185	6959206	GGATATCAACTATCTCGACACC		59	6959063	6959144	GTCATGCGTTTAATGTCCC		59	NA	
Drosophila melanogaster	50	l(3)mbn	FBgn0002440	FBtr0100355,FBtr0077062	3	2	2	90	3L	6117829	6117916	AATGTACCCTCAAATGGTGG		59	6117758	6117776	CTCCTGCACCGATAATACC		59	NA	
Drosophila melanogaster	50	DnaJ-1	FBgn0015657	FBtr0077124,FBtr0077123	3	2	2	60	3L	5744201	5744219	ATCGAGCATGATCTGTTCG		59	5744159	5744178	TCATCTTCTTGATGCATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17030	FBgn0035584	FBtr0073374	3	1	1	63	3L	4980548	4980569	GGAGGATAAACAGAATTTGCAG		59	4980506	4980525	CCACTTGTAGATGTTGTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1268	FBgn0035521	FBtr0113137,FBtr0073230,FBtr0113136	3	3	3	98	3L	4262902	4262920	CTCACCAGAATCTGATCCG		59	4262981	4263000	CGATCAAGGGATTCATTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1265	FBgn0035517	FBtr0073228	2	1	1	82	3L	4255722	4255812	CAAACATGACTCGAATCTACAC		59	4255855	4255873	AAGGAACGTCGAAATCAGG		59	NA	
Drosophila melanogaster	50	pav	FBgn0011692	FBtr0073227	3	1	1	90	3L	4243626	4243644	CATGTACTCGGTGTTTGTC		58	4243696	4243774	CTGCAAAGTCTTCTGTATACC		58	NA	
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0110922,FBtr0073132,FBtr0073135,FBtr0110924,FBtr0073131,FBtr0073134,FBtr0110923,FBtr0110920,FBtr0110925,FBtr0073133,FBtr0110921	1	11	11	117	3L	3552857	3578300	CAGATTAACAATTTCCCGCG		59	3578377	3578398	GTTGTATGGAACTTTGTTACCG		59	NA	
Drosophila melanogaster	50	PHGPx	FBgn0035438	FBtr0073068,FBtr0073066,FBtr0073067	1	3	4	138	3L	3328064	3328082	CTGGTGATCCTCAACTTCC		59	3328251	3328269	TGTCTCCATTCACATCGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32280	FBgn0052280	FBtr0073030,FBtr0073031,FBtr0073032	2	3	3	125	3L	3168251	3168338	GATTGCCCTATTTGGTTGC		59	3168426	3168445	CAATCCTATCGACGGTATCG		59	NA	InUTR
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	3	9	15	80	3L	3083795	3084813	CTCGCCACTTATATGAATCGA		59	3084852	3084873	CAAATTAAGTAGTGAGAACCCG		59	NA	
Drosophila melanogaster	50	CG32295	FBgn0052295	FBtr0072962	3	1	1	61	3L	2526056	2526075	CGTATGATCGATTTGATGGA		57	2526014	2526032	TTATCCGGAATCGGTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GV1	FBgn0027790	FBtr0072785,FBtr0072784	2	2	2	224	3L	1821407	1821812	CCAATCCCTATGTCTACGT		58	1822000	1822018	TATCAGACACAATTGCCGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	drpr	FBgn0027594	FBtr0072798	1	1	2	97	3L	1716832	1716850	AAGAGGAGCATGTCTACGA		59	1716546	1716682	ATCGTATTCATCCTCGGGA		59	NA	
Drosophila melanogaster	50	CG9130	FBgn0035197	FBtr0072655,FBtr0072657	3	2	2	60	3L	1252201	1252221	AATCCGATAAGTCTGAGAAGC		59	1252242	1252261	ATGTAGAGGAAGTTTCCTGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34263	FBgn0085292	FBtr0112458	3	1	1	62	3L	265790	265811	GTGCTATTACCAATTGTGATCC		59	265749	265767	ATTGGTGCTCATTTGTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me28S-A2589a	FBgn0086023	FBtr0114299	3	1	1	84	2R	17212744	17212762	TACTGAGTGCCTAAATCGA		57	17212809	17212828	GTTATCAGACAAATGCCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR14499	FBgn0034317	FBtr0086751	1	1	1	60	2R	14075374	14075392	AAGAACTTCTTCGGATCGT		58	14075415	14075434	ATTGCTAAAGCTCAGAAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4692	FBgn0035032	FBtr0072340,FBtr0072339	2	2	2	60	2R	20486728	20486748	GCAACAGATTCTACACTTTCC		59	20486688	20486709	TATAGTTTAGTGGTGATTGCCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	pio	FBgn0020521	FBtr0072312,FBtr0072313	2	2	2	186	2R	20476321	20476910	ACTTAATCACAATCGCAGC		58	20479586	20479604	TTAATGGTGATCAGCATCG		57	NA	
Drosophila melanogaster	50	CG5539	FBgn0034907	FBtr0072123	1	1	1	60	2R	19692533	19692553	CTATAAGACTCTGAACAGCGG		59	19692574	19692593	AACTATCCAGTATTTGGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9850	FBgn0034903	FBtr0100330	1	1	2	80	2R	19644063	19644947	TAGTCTACAATGTAACCAGCAG		59	19644004	19644022	GATTCTCGTCCTTGTTGCT		59	NA	
Drosophila melanogaster	50	apt	FBgn0015903	FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067	3	5	5	109	2R	19484510	19484593	CATAAAGACGGAAATGACACAG		59	19484659	19484681	GATCGAGTAGGTATTTCTTCTCC		59	NA	
Drosophila melanogaster	50	PIP5K59B	FBgn0034789	FBtr0071901,FBtr0110862,FBtr0071900	3	3	3	102	2R	18763722	18763742	TCTATATTCTACCTGACGACC		57	18763803	18763886	GATTCATATAGTAACCAGGCAG		58	NA	
Drosophila melanogaster	50	CG34446	FBgn0085475	FBtr0112750	1	1	1	64	2R	18535235	18535253	AAACCACTTTACTTTGCCG		58	18535189	18535207	TTGGTCCTGCAATAAGGAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	px	FBgn0003175	FBtr0112821,FBtr0112820	1	2	3	103	2R	18430901	18430919	TTTCAAGCCAAAGGATACG		58	18428464	18428482	ACTCCGGTTTATGAGATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	LBR	FBgn0034657	FBtr0071711,FBtr0071712	3	2	3	109	2R	17608823	17609371	GGTTTCCGAGGTATCATCG		59	17609444	17609462	CGGAGCTTGTGTTAAATGC		59	NA	
Drosophila melanogaster	50	RpL29	FBgn0016726	FBtr0071593,FBtr0071594,FBtr0071592	2	3	3	137	2R	17181657	17181744	CACTCTGGGTATGGATGTG		59	17181844	17181863	TACAGAGTAACAGGCTTTGG		59	NA	
Drosophila melanogaster	50	CG4286	FBgn0034601	FBtr0071627	1	1	1	60	2R	17065905	17065923	CATCGAGGAAGAGTTCCTG		59	17065863	17065881	CTTCGGATTCATGGGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mago	FBgn0002736	FBtr0071569	2	1	1	62	2R	17016322	17016340	AAGAACGACACCATGATCC		59	17016366	17016384	CTTCAGTTCTTCCATCACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11055	FBgn0034491	FBtr0086271,FBtr0086270,FBtr0086272	1	3	3	141	2R	16148062	16148142	CTTACACTTAACATGGACCC		57	16148245	16148324	CTTCGTTGGATAACATTGTG		57	NA	
Drosophila melanogaster	50	CG16898	FBgn0034480	FBtr0086325	1	1	1	60	2R	15892255	15892276	AATCCCTATCAGAAGATTGTCC		59	15892216	15892237	CGGTTATACACATCATACTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CalpA	FBgn0012051	FBtr0086529,FBtr0112869	3	2	3	123	2R	15316872	15316890	CATCGATCCTCAGAAGGAG		58	15316977	15317053	TTTGGGTAAATCGTCCCTC		59	NA	
Drosophila melanogaster	50	CG7461	FBgn0034432	FBtr0086517	3	1	1	60	2R	15193938	15193958	GACGAGGCTATACAAATTCTG		58	15193979	15193998	CTCGTTCCAATCCATTATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	IM2	FBgn0025583	FBtr0086664	2	1	1	115	2R	14274182	14274200	AGTTCTTCTCAGTCGTCAC		58	14274341	14274359	ATTGCAGTATTTGCAGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5098	FBgn0034300	FBtr0113092,FBtr0086732	3	2	2	196	2R	13986927	13986945	GTACCTAGTGACTAGCGAC		58	13987105	13987192	GCTTACGTTTATGCATGCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	spin	FBgn0086676	FBtr0089593,FBtr0089589,FBtr0089592,FBtr0089590,FBtr0089591	2	5	5	96	2R	12019319	12019339	ATTATCTCGGATCTGTTCGTG		59	12019397	12019824	CCACAATGTATCCCAGACC		59	NA	
Drosophila melanogaster	50	Jhe	FBgn0010052	FBtr0087223	1	1	1	80	2R	12008553	12008572	GACCCGAATACTTTATGGAC		57	12008615	12008699	TCGATAGGAATCCAAAGGG		58	NA	
Drosophila melanogaster	50	Asph	FBgn0034075	FBtr0087218,FBtr0087221	2	2	4	89	2R	12000754	12001291	CCAAATACAACTGAGGATGAG		58	12001342	12001360	ATCATCCGGTATGTGATCC		58	NA	
Drosophila melanogaster	50	CG10257	FBgn0033985	FBtr0087408	3	1	1	146	2R	10830748	10830767	CATGATTTGGGTCAATGGAC		59	10831382	10831400	ATGTAGAGGGAGTACTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10151	FBgn0033960	FBtr0087471,FBtr0087472	1	2	3	80	2R	10641389	10641503	ATCACGAGAAAGCAATGAG		57	10641327	10641345	AACGATTGTGTTGGATCTC		57	NA	
Drosophila melanogaster	50	tra2	FBgn0003742	FBtr0089617,FBtr0089620,FBtr0089615,FBtr0089619,FBtr0089616,FBtr0089621	3	6	7	143	2R	10490376	10490678	GATTGACGCACAAACACAG		59	10490251	10490272	CGTTGGGTTATAGAGAAATCGA		59	NA	
Drosophila melanogaster	50	CG8485	FBgn0033915	FBtr0087572,FBtr0087570,FBtr0087571,FBtr0087569	1	4	4	90	2R	10126046	10126142	GTTCACAGGGATCTAAAGC		57	10125974	10125992	AGAACTTGTTGCTAAACCC		57	NA	
Drosophila melanogaster	50	cg	FBgn0000289	FBtr0112795,FBtr0112794,FBtr0112796,FBtr0087527	1	4	7	97	2R	10064188	10064691	ACAAGAACTATCTGCTAGTGG		59	10064750	10064768	ATTGGTCAACGTATGGTGG		59	NA	
Drosophila melanogaster	50	CG8233	FBgn0033897	FBtr0087582,FBtr0087584,FBtr0087583	3	3	3	84	2R	10037317	10037743	TTTGTTCCTCACAATGATGC		59	10037252	10037270	GAGTTATCACCTTTGGCAG		58	NA	
Drosophila melanogaster	50	CG3955	FBgn0033793	FBtr0087780	3	1	1	68	2R	9015922	9015940	ATGTACTGCCAACTGTGAG		59	9015872	9015890	GAAGTGCAGGAATAGAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spt4	FBgn0028683	FBtr0087840	2	1	1	75	2R	8521420	8521438	ATTATTGCCCTAACTACGC		57	8521543	8521561	AGATACCACGAGTAAAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp6g2	FBgn0033696	FBtr0088009	2	1	1	60	2R	8077497	8077518	GATCCCAGAACATATTCTTCCT		59	8077458	8077477	GATAGCTTCAAACGTACCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30036	FBgn0050036	FBtr0088050	1	1	1	60	2R	7865989	7866007	CGTATTCATCTTGGGACGA		59	7865947	7865968	CCTGAATAGCTTATCAAGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ef1alpha48D	FBgn0000556	FBtr0088036,FBtr0088035	1	2	2	60	2R	7781322	7781340	AACTGCCAAGTACTACGTG		59	7781362	7781382	GTTCTTGATGAAATCCCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7777	FBgn0033635	FBtr0088136,FBtr0088137	2	2	2	245	2R	7327364	7327484	TCTCAATGAGCTCAAATCCA		59	7327753	7327771	ATCAAGCTAATTCGTCCTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG13223	FBgn0033599	FBtr0088113	3	1	1	81	2R	7145171	7145246	GCCTACATAATAGTTCGAGGA		58	7145288	7145307	TAGCCACAGGAATCATTAGG		58	NA	
Drosophila melanogaster	50	CG12943	FBgn0033572	FBtr0088198	3	1	2	85	2R	6792307	6792325	TGGAATCATCGGCTATTGG		59	6792373	6792513	ACTGGGAAAGGATTTCATCC		59	NA	
Drosophila melanogaster	50	CG33144	FBgn0053144	FBtr0088254	2	1	1	69	2R	6629450	6629471	GAACCTAACTACAACGAATCTG		58	6629341	6629420	GTCCAATTCGATTTCTCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CAP	FBgn0033504	FBtr0088344	3	1	10	82	2R	6187766	6192142	CTTTAAAGACGTGAACATCCAC		59	6192184	6192203	GAATGGCTAGTTCCTCTTCC		59	NA	
Drosophila melanogaster	50	CG30342	FBgn0050342	FBtr0088582	1	1	1	60	2R	5032001	5032022	GTACATAGACAATCGAAAGCTG		59	5032043	5032061	GTAGACAATCTCGAACTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vang	FBgn0015838	FBtr0088566	2	1	1	60	2R	4992059	4992080	CTACTACATCAAGATCATTCGC		58	4992101	4992119	CTGACCCAACATGTAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13748	FBgn0033355	FBtr0088656	3	1	1	115	2R	4827985	4828003	ACTGAAAGAGTACGTTGGA		58	4828082	4828100	AGATGGCGTCAAAGAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14767	FBgn0040777	FBtr0088720,FBtr0088719	2	2	3	151	2R	4607469	4607487	GGAGATGATGGACGAACTG		59	4607278	4607355	TATCGAAGTTCTGGTAACGC		59	NA	
Drosophila melanogaster	50	CG30359	FBgn0050359	FBtr0088749	2	1	1	86	2R	4351070	4351146	ACCATGAGTAACGTCTTGAG		59	4351195	4351213	CGCTATTTCGAACACATGG		59	NA	
Drosophila melanogaster	50	lig	FBgn0020279	FBtr0100575,FBtr0088775,FBtr0088776,FBtr0088774	3	4	4	81	2R	3961935	3961953	TGCCATACTATCAGCAACC		59	3961997	3962988	TAATATCCCTGCACATGTGG		59	NA	
Drosophila melanogaster	50	Nup44A	FBgn0033247	FBtr0088860,FBtr0088861	3	2	3	142	2R	3877556	3877635	TCAGACCGTCAAGATTTGG		59	3877741	3877759	GATCAAATGAGCATGTGGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18812	FBgn0042135	FBtr0088935	1	1	3	82	2R	3616657	3616946	CTTCGTAATCTGGGATGGG		59	3616593	3616611	TGCTTTCAGTCAGAGTCTC		58	NA	
Drosophila melanogaster	50	didum	FBgn0015933	FBtr0089745,FBtr0089743	3	2	3	118	2R	3394087	3394172	TGTATTCGATACACCGATCTG		59	3394251	3394270	ATAACACGATTCTCGATCGG		59	NA	
Drosophila melanogaster	50	CG12831	FBgn0033141	FBtr0089057	2	1	1	74	2R	2961011	2961029	CCAATTACGCATCCATCAG		58	2960955	2960974	AATTGGTGGATAACCTTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spn1	FBgn0028988	FBtr0086163	2	1	1	278	2R	2771949	2772025	GAGACCTTAGAGAAGCTGG		58	2772336	2772355	TATTCAAGGGCTTACAACAC		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG3420	FBgn0033100	FBtr0086135	2	1	1	60	2R	2644051	2644070	GAGTTCCTGAAGATCAAGCA		59	2643949	2643967	AGTAGTCTCCCGACTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tdc1	FBgn0050445	FBtr0086143	3	1	1	199	2R	2565501	2565519	ATGAACGATTTGAGGTTCG		58	2565198	2565216	CAGGATGTCCTTCTCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17683	FBgn0040002	FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300	3	4	5	80	2R	19474	19549	AATCACTTCAGTTGAGGTG		57	19591	19611	CAGTCTAAATCAAGGAGATCG		57	NA	
Drosophila melanogaster	50	step	FBgn0086779	FBtr0110946,FBtr0085910	3	2	2	91	2L	21742582	21742600	TATTCACCAACACGGACAC		59	21742266	21742529	GGGTTTGTCTTTAACAGATGG		59	NA	
Drosophila melanogaster	50	CG2225	FBgn0032957	FBtr0085918,FBtr0085915	1	2	5	82	2L	21670580	21670601	GGAGATTCACTTTAGAAACAGC		59	21670466	21670537	CTATTAACGATCGCACCGT		59	NA	
Drosophila melanogaster	50	CG8678	FBgn0032935	FBtr0081487	1	1	1	166	2L	21213357	21213375	AGACTAAGCCTTCGAATCC		58	21213153	21213227	AAACTTGGCAGAATCAGAC		57	NA	
Drosophila melanogaster	50	Dap160	FBgn0023388	FBtr0081503,FBtr0081504	2	2	2	80	2L	21137683	21137769	GAACAGATCTTGGACAAGG		57	21137621	21137639	ATCGTCCTTATCAAACGAC		57	NA	
Drosophila melanogaster	50	CG9270	FBgn0032908	FBtr0081436,FBtr0081435	1	2	2	90	2L	20930076	20930152	CTTAGAAGAGGTGCACCTC		59	20930004	20930022	TACACTGTAGTTGGATCCG		58	NA	
Drosophila melanogaster	50	CheB38b	FBgn0067311	FBtr0081454	2	1	1	81	2L	20816837	20816856	TGGTTCAAGTATTGGTTCAG		57	20816716	20816793	CTAGCACGGTATCTTTCAC		57	NA	
Drosophila melanogaster	50	CG13958	FBgn0032825	FBtr0081295	3	1	1	60	2L	19828688	19828706	ACTATGTGCTCTTCAACCC		59	19828729	19828748	TTGCGTATCTTGTACTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spi	FBgn0005672	FBtr0081271,FBtr0081269,FBtr0081268,FBtr0081270,FBtr0100597,FBtr0081272,FBtr0081267	3	7	7	65	2L	19568669	19568687	ATCTACCGGTTTACAGCTG		59	19568622	19568640	TCTCCTTGTATTCGCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)37Cd	FBgn0086445	FBtr0081156	3	1	1	109	2L	19127556	19127574	GCTATCCATAACCGTGAGG		59	19127647	19127722	CACAAAGCGTTTCAAAGGT		59	NA	
Drosophila melanogaster	50	ncm	FBgn0086707	FBtr0081088	1	1	1	118	2L	18446810	18446828	CACATCTGATGATGCTGGA		59	18446646	18446664	CAGGATCTCACGACTTAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0100316,FBtr0100313,FBtr0081020,FBtr0081016,FBtr0081013,FBtr0081015	3	6	12	102	2L	17651479	17655676	CATACTGATACTCGTCTTGGT		59	17651397	17651415	GTTGATGATATTCTCGCGC		59	NA	
Drosophila melanogaster	50	Idgf3	FBgn0020414	FBtr0080864,FBtr0080862,FBtr0080863	2	3	3	91	2L	16451847	16451865	TGATCAAGGATTTGAGTGC		57	16451920	16452204	ATCATAGTACCAGCTGGAG		57	NA	
Drosophila melanogaster	50	CG4930	FBgn0028515	FBtr0080824	3	1	1	62	2L	16258273	16258292	GATCCCGTTAAGGATTACCA		58	16258317	16258335	ATCCACGATTTCGTCTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18063	FBgn0028856	FBtr0080798,FBtr0080797	3	2	2	83	2L	15958577	15958709	GACTCGAGCATATGTCTGG		59	15958756	15958774	TTTGTAGCAAGCATTAGCG		58	NA	
Drosophila melanogaster	50	CG15255	FBgn0028950	FBtr0080785	3	1	1	60	2L	15611057	15611076	GAAGTTGGTTACGACTACGA		59	15611016	15611034	CGTTGATAGAGAAGGCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lace	FBgn0002524	FBtr0080738	3	1	1	123	2L	15503218	15503302	GGATCCAAGAAACTGATTGAC		58	15503386	15503405	CATCTTCACCCATAATGGTC		58	NA	
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0080711,FBtr0100613,FBtr0080712	3	3	7	107	2L	15261795	15261813	ATCTACGACGAATCCTCGA		59	15261626	15261725	CGTATCGCATTCAATTTCCA		58	NA	Nonspecific
Drosophila melanogaster	50	CG4103	FBgn0028925	FBtr0080727	1	1	1	60	2L	15009375	15009394	CTCTCAATGTGATGAATGCT		57	15009334	15009353	AGGACAATATCCCGAAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mol	FBgn0086711	FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015	2	5	5	162	2L	14977343	14977361	ATATGAAGGCTTTGACAGG		57	14977068	14977217	ATAAAGCAGAGAATGCCTG		57	NA	
Drosophila melanogaster	50	Mst35Bb	FBgn0013301	FBtr0080681	2	1	1	266	2L	14882569	14882587	ATCATCCAAAGAGGAGAGC		58	14882321	14882339	TATCCTTTCTATGCTCCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33309	FBgn0053309	FBtr0100163	3	1	2	80	2L	14812301	14812319	GAAGTGAACCACTATAGGC		57	14812363	14813398	ACCTATGTATATTCGCCGA		57	NA	
Drosophila melanogaster	50	Adhr	FBgn0000056	FBtr0100187,FBtr0006151	3	2	2	80	2L	14617635	14618079	AATATAGCGAAACTGGCCA		59	14618123	14618141	GGTACTCGGCTTTATCGAC		59	NA	Nonspecific
Drosophila melanogaster	50	spel1	FBgn0015546	FBtr0080630	1	1	2	99	2L	14364515	14364533	CATTCTTGGAAGAGTGGGA		58	14364595	14364690	AGTGGCAGTCCTTATTATGC		59	NA	
Drosophila melanogaster	50	He	FBgn0028430	FBtr0080616	3	1	1	60	2L	13972472	13972493	GTACACAGATTTCTGACTTCAC		59	13972433	13972452	AATATCTTTGCTGTCGTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ance	FBgn0012037	FBtr0080553,FBtr0080552	3	2	2	87	2L	13908583	13908661	TATCTGAGATACTTGGTCTCCT		59	13908708	13908727	CATTGTCGGGATCATATTGG		58	NA	
Drosophila melanogaster	50	CG33640	FBgn0053640	FBtr0091617	2	1	1	63	2L	13528007	13528028	CTGGCCATATGATGATTAATCG		59	13528050	13528070	GTTATGTCCATCGATGAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tap42	FBgn0051852	FBtr0080466	3	1	1	60	2L	13368687	13368706	TGTTGATGAATTCTACCAGC		57	13368729	13368747	AACCTTCTCCTCATCAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31728	FBgn0051728	FBtr0080453	1	1	1	80	2L	13256708	13256726	CAGGATCAAACGACTTGTG		58	13256848	13256866	TCACTCAACGTCAGTATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ACXC	FBgn0040508	FBtr0080413,FBtr0100494	3	2	2	81	2L	12914446	12914466	CAAGTCAATCATCAATGACCG		59	12914506	12914637	CAGGGTGAGTTTAAGTTAATGC		59	NA	
Drosophila melanogaster	50	ACXC	FBgn0040508	FBtr0080413,FBtr0100494	1	2	2	80	2L	12914445	12914465	CCAAGTCAATCATCAATGACC		59	12914505	12914635	GGGTGAGTTTAAGTTAATGCC		59	NA	
Drosophila melanogaster	50	escl	FBgn0032391	FBtr0100626,FBtr0080286	1	2	2	60	2L	11991111	11991131	GATGAGCACGAAGTTAATTCC		59	11991152	11991171	TAGTAGTGCTGAACAAACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6686	FBgn0032388	FBtr0089572,FBtr0089573	1	2	2	61	2L	11985837	11985855	TACAGTGCAGAAGAGTTGG		59	11985733	11985751	TGCCGAAGTTTCTTAACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Or33c	FBgn0026390	FBtr0080280	3	1	1	60	2L	11938854	11938873	CATCATTGTCTCCTACATGC		58	11938896	11938914	CAAGTAGTAGACCAGCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	giac	FBgn0032368	FBtr0080268	1	1	1	97	2L	11610907	11610986	AAACTTCGATGGATTGCGA		59	11610828	11610846	CACTGTAGCTCTGAGTACG		59	NA	
Drosophila melanogaster	50	CG14930	FBgn0032366	FBtr0080245	2	1	1	95	2L	11521185	11521203	TCTGGAGTTCGTAGATGGT		59	11521046	11521126	CTTGCCAAAGTATAAGCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33695	FBgn0052831	FBtr0091683	1	1	5	219	2L	11278275	11278293	AATTTGTTGTTCCACCGTG		59	11278636	11278654	TTAGGCTGATCTTGGTCAG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Gyc32E	FBgn0010197	FBtr0112856	2	1	2	82	2L	11142406	11142784	CCATATTCGCGACATTTGC		59	11142342	11142363	CAAAGACACGTTGATGATATGG		59	NA	
Drosophila melanogaster	50	aub	FBgn0000146	FBtr0112793,FBtr0080165	2	2	2	83	2L	10999440	10999525	GACTTTAGGACGTTGAGGG		59	10999375	10999393	CTTGTTGAACATGCGAAGG		59	NA	
Drosophila melanogaster	50	CG6729	FBgn0032296	FBtr0080119	3	1	1	82	2L	10742716	10742735	GAACACTAAGGATCCAAACC		58	10742595	10742613	CATAGTTCAAGCTCTCGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7384	FBgn0032262	FBtr0080135	1	1	1	60	2L	10509502	10509520	CATACTCCTAGTTTCGGCG		59	10509245	10509263	AATCGTGCTATTCTCCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34367	FBgn0085396	FBtr0112592	2	1	1	137	2L	10348762	10348781	CACCACATAATCACAATCCG		58	10348181	10348662	TTATAGCAGCTGCGTACTG		59	NA	
Drosophila melanogaster	50	CG4839	FBgn0032187	FBtr0079944,FBtr0079943	1	2	2	155	2L	10151645	10152707	CGAATAGTCAAGATCAAATGGC		59	10152822	10152841	CGTCCTTTGCAATAGATTCG		59	NA	
Drosophila melanogaster	50	CG4619	FBgn0032166	FBtr0079883	3	1	1	60	2L	9939759	9939779	CAAGTCAAAGATGAACGAGTG		59	9939800	9939819	TCTTTACAGGATCCAGACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nAcRalpha-30D	FBgn0032151	FBtr0079913,FBtr0100236,FBtr0079916,FBtr0079914	1	4	6	60	2L	9825635	9825653	AGGTTAAGTTCGGACTGAC		58	9819312	9819330	AGAAGCTGATTCTTCTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4382	FBgn0032132	FBtr0114535	1	1	1	80	2L	9599743	9599763	CGATGATTTCATGAAGGTACC		58	9599625	9599704	CTTTGGAGAATGGATAAAGCTG		59	NA	
Drosophila melanogaster	50	CG9483	FBgn0032072	FBtr0079738	1	1	1	60	2L	8866962	8866980	CGGACTTAGTGTGATCCTG		59	8867001	8867022	GGTGTAACCTATAATGATCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17834	FBgn0028394	FBtr0079686,FBtr0079689,FBtr0079687,FBtr0079688	3	4	4	70	2L	8536210	8536229	CTGGGAAGATTTCTACTGGA		58	8536262	8536905	GATTGTAGTTGGCGATGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	Btk29A	FBgn0003502	FBtr0079616,FBtr0112836,FBtr0079617	3	3	6	168	2L	8298110	8298128	TCGATGGTTTGAGTTGACC		59	8284050	8284128	TTGGAACGGATAACCATCC		59	NA	
Drosophila melanogaster	50	Acp1	FBgn0014454	FBtr0079500	2	1	1	115	2L	7741354	7741490	AACAGCACCATGAAATTCG		59	7741257	7741275	GTGTAGGACAGTCCATGTC		59	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13796	FBgn0031939	FBtr0114496,FBtr0079504,FBtr0079503,FBtr0079505	3	4	4	82	2L	7728553	7728574	CCTTACTCATATTACCATTGGG		58	7728428	7728510	TCATACCAACGTGATCCTC		58	NA	
Drosophila melanogaster	50	CG33296	FBgn0053296	FBtr0079509	2	1	1	104	2L	7714975	7714994	GTTCTTGTCTAGTGCAAGTG		58	7714821	7714908	AGTTGAGTTGCAGTCAGAG		59	NA	
Drosophila melanogaster	50	CG5973	FBgn0031914	FBtr0079446,FBtr0079448,FBtr0079447	3	3	3	129	2L	7444739	7444758	CTGATCTCCCATATTGAGGC		59	7444849	7444935	TGTCAGCCAGTTCATAATCC		59	NA	
Drosophila melanogaster	50	CG9550	FBgn0031826	FBtr0079286	2	1	1	72	2L	6497916	6497934	TATCAAATGGTCGAGACCC		58	6498024	6498042	GGAACAAGTCCTCATAACG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG34180	FBgn0085209	FBtr0112373	1	1	1	64	2L	6060734	6060752	AAGCATATGCAGCTTTCCA		59	6060780	6060798	TAATCACGGCCTGTATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7371	FBgn0031710	FBtr0079129	1	1	1	80	2L	5522670	5522743	AAGAATCGATACACAGCGG		59	5522608	5522627	AAATAGGTATTCCCGACAGG		58	NA	
Drosophila melanogaster	50	qtc	FBgn0028572	FBtr0100263,FBtr0100259	2	2	7	99	2L	5068385	5070107	GAACATACGCACCATTTATCG		59	5070168	5070186	GAAGATAGCGCTCTTGAGG		59	NA	
Drosophila melanogaster	50	CG9121	FBgn0031675	FBtr0079032	3	1	1	246	2L	5048821	5048839	CTCAGATCGAATTGCACAC		58	5048522	5048540	GAAGATACCTTTCCTGCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Trip1	FBgn0015834	FBtr0079053	2	1	1	213	2L	4967052	4967071	AAATTACGTCGATGTTGTGG		58	4966803	4966821	TCCGAATCGAACAATTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	betaggt-I	FBgn0015000	FBtr0078991	3	1	1	103	2L	4945960	4945978	GCTCCGATTCCTTAATCTC		57	4946102	4946120	ATGAGTTTAGCACATCCAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG2950	FBgn0031637	FBtr0077411,FBtr0077409,FBtr0077410	2	3	3	87	2L	4845309	4845327	CAAACCGACCAAGATTCCT		59	4845145	4845259	CTTGATGCCCATTACTTTGC		59	NA	
Drosophila melanogaster	50	CG3964	FBgn0031574	FBtr0077501,FBtr0077502	2	2	2	111	2L	3865422	3865505	CATCATCAAGAACACCACC		58	3865580	3865598	GAACGATCCGGGTATATGG		59	NA	
Drosophila melanogaster	50	CG2816	FBgn0031564	FBtr0077536	3	1	1	123	2L	3703589	3703607	AACGAGTATGAGGTCTGAG		58	3703808	3703879	CAGGCATAGTTTCACTCTC		57	NA	InUTR
Drosophila melanogaster	50	E23	FBgn0020445	FBtr0089981,FBtr0089980,FBtr0089979	3	3	3	266	2L	3337718	3337736	AGGAGGAGATCTTCTTCCC		59	3337406	3337488	CAGAAGTGGGTTCATCCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33281	FBgn0053281	FBtr0077584	2	1	1	177	2L	3324849	3324867	TTGTGTCTCATGTGGATGG		59	3325063	3325134	AAATGCCGCGAATATTGTC		59	NA	
Drosophila melanogaster	50	CG3347	FBgn0031513	FBtr0077579	2	1	1	102	2L	3270743	3270761	TTTACCCAATATGCCAGCA		59	3270966	3270984	GCTCGGACTACGATATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3123	FBgn0031465	FBtr0077723	3	1	1	60	2L	2824615	2824636	GGCTGTTTATCTACAGAAAGAG		58	2824576	2824594	GGTCGCATGTAAATATCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	colt	FBgn0019830	FBtr0077734,FBtr0077732,FBtr0077733,FBtr0077731	1	4	4	65	2L	2769055	2769073	CTATACAAGGAGGGTGGAC		58	2769008	2769026	CAAATCCCTGAGCATTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9967	FBgn0031413	FBtr0077799,FBtr0100648	2	2	2	123	2L	2309693	2310134	TTTCCTCAACGATTACAGC		57	2309588	2309606	CTCCGGAGGATTATCATCC		58	NA	
Drosophila melanogaster	50	chinmo	FBgn0086758	FBtr0077879,FBtr0077877,FBtr0077880,FBtr0077878	2	4	4	103	2L	1690666	1690684	AATGGAACAGTTTCTCGTC		57	1690751	1694237	TTTGAATACTACGCCATCG		57	NA	
Drosophila melanogaster	50	CG18131	FBgn0031343	FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934	2	4	6	63	2L	1500147	1500167	GCCAGCTTATATCTAATGACC		58	1500036	1500123	GATATGTTGACTTGAGTGGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5556	FBgn0031332	FBtr0077948	3	1	1	60	2L	1352713	1352732	CTATTGCATCTTCGATCTGG		58	1352616	1352635	GGCCCTCTTATAGACATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3876	FBgn0031284	FBtr0078039	2	1	1	60	2L	819064	819082	CATTTACCACTCCGTTTGG		58	819022	819040	GGATGTGTTCCCGATAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089431,FBtr0089436,FBtr0089435	2	3	10	116	2L	111013	111031	TGGAAGACACTTAACCTGC		59	111110	112701	AAACATGATACCCTGGTCAC		59	NA	
Drosophila melanogaster	50	Tak1	FBgn0026323	FBtr0077319	2	1	1	117	X	20393466	20393543	AGATCTACAAGGGTGAACG		58	20393367	20393385	ACTATGTACTGCATCGACG		59	NA	
Drosophila melanogaster	50	CG33498	FBgn0053498	FBtr0089611	1	1	1	212	X	20096835	20096935	TGATGGCCATAGTTGAGTG		59	20096246	20096264	TGTAGTCACCAGAGGTCTC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG32556	FBgn0052556	FBtr0074477,FBtr0074478	2	2	2	94	X	17568970	17569361	GATTACCTGATGACCAGGG		59	17568894	17568912	GGATAACTGGATGTGGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9723	FBgn0030768	FBtr0074376	2	1	1	90	X	16548229	16548248	ACAATCTGCGTTTGATTCTG		59	16548091	16548176	CGATAGCAGATCAGGAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF-2alpha	FBgn0004925	FBtr0074300	3	1	1	107	X	16339898	16340218	TCTATGTAATGACCACATCCAC		59	16339812	16339830	TGAACTCTCCATCGTACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pis	FBgn0030670	FBtr0074059	1	1	2	60	X	15597113	15597227	CTTTAACCAAACGCATTGC		58	15597071	15597090	CACAATATCGGCAGATAACC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG32625	FBgn0052625	FBtr0073839	3	1	1	154	X	13650530	13650617	TGAACATATCATCAAGTGCC		57	13650395	13650413	TCTCACAGTGGATATTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12177	FBgn0030510	FBtr0073846	2	1	1	80	X	13572778	13572898	ATATACACATTAACTGGCGC		58	13572717	13572735	GGTTGAGCATGGTAATTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18292	FBgn0030269	FBtr0073437	1	1	1	71	X	11032639	11032657	TCATCGCAGCTAAAGTACC		59	11032692	11032710	GATATTGGCCGAAGTTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0071296,FBtr0112965,FBtr0071294,FBtr0071298,FBtr0071295,FBtr0071297	1	6	6	87	X	9008595	9008676	ACGAGGATGAGTTTGAACG		59	9008727	9008745	CTTGTGGTCGAGACTTGAG		59	NA	
Drosophila melanogaster	50	l(1)G0193	FBgn0027280	FBtr0071130	1	1	2	81	X	7837250	7837724	CCATGATAGTGTCTACCGA		57	7837187	7837207	GCTATATCCGCATATAGTGAG		57	NA	
Drosophila melanogaster	50	RpS6	FBgn0004922	FBtr0071136,FBtr0071137,FBtr0071135	3	3	3	112	X	7794185	7794203	CTGGTCGTCTTGAAGAAGG		59	7794091	7794109	CTCAAGTTGTAGAGCTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab39	FBgn0029959	FBtr0071072	3	1	1	133	X	7629366	7629812	GAGTTATCCGATCCCACAG		59	7629909	7629927	TAGTAGGACTTGGTGATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ct	FBgn0004198	FBtr0114613	2	1	3	91	X	7522897	7526805	TCGACAAAGTAATACTCCCAC		59	7539842	7539860	TAGCTGCTCTTTGAGTGTG		59	NA	
Drosophila melanogaster	50	CG14434	FBgn0029915	FBtr0071040	2	1	1	60	X	6746414	6746433	CTCCCAATTGGTCTACTACG		59	6746373	6746392	GTTGAACTTGGAAAGCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lag1	FBgn0040918	FBtr0070937	3	1	2	81	X	6160490	6160510	AACTACAAGGACCTCATATGG		58	6153747	6160447	ATATCCAGAAACGCTCCAG		59	NA	
Drosophila melanogaster	50	kirre	FBgn0028369	FBtr0070560,FBtr0070559	2	2	2	87	X	3025864	3025960	ATCAAACGGATTTCTCGGA		58	3026008	3026029	CGTCCTTAAATAGGGATTACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	msta	FBgn0053548	FBtr0070422	2	1	2	71	X	2101619	2101637	TCACCCGGAATATCTTCCT		59	2100496	2101584	CAGTATTGTCGTGACACCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3638	FBgn0026875	FBtr0070248,FBtr0070246,FBtr0070249,FBtr0070247	1	4	4	88	X	1117713	1117731	TTATTTGGCCTCCAGTGTG		59	1117575	1117661	CATAGGGACTTCTCATGCC		59	NA	
Drosophila melanogaster	50	mod(r)	FBgn0016038	FBtr0089725,FBtr0089726	3	2	4	187	X	516160	516242	CCAGGTGGAGATTATATCAAGAG		59	516389	516482	CAATCTGAAGAAGCTCCCT		58	NA	
Drosophila melanogaster	50	CG3038	FBgn0040373	FBtr0070107,FBtr0070108	3	2	2	228	X	139376	139459	AAAGAGAACTCTTAGCCGT		58	139166	139185	TAGTCCTCGATGAAATTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41489	FBgn0085650	FBtr0114094	1	1	1	70	U	1939559	1940136	CAAGATCGAGAGCGAAGAG		59	1940170	1940188	AAGAAGCACATAGGCTAGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40203	FBgn0058203	FBtr0113833	3	1	1	168	U	448295	452481	TCAGCAAACTTGTGATGGT		59	452613	452631	AACTCGATCTTAGTGCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF4G	FBgn0023213	FBtr0089243,FBtr0112904	1	2	2	84	4	941816	945718	CCTATCACTGATGAAACGGA		59	941751	941769	GATGGGTCTGATTAGGTGG		59	NA	
Drosophila melanogaster	50	bxd	FBgn0020556	FBtr0083343,FBtr0083344	2	2	4	93	3R	12571211	12571230	CAATATGCTTCGGTAATCGT		58	12570416	12571155	ATGGGAAGTGATAATGTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1907	FBgn0039674	FBtr0085447	3	1	1	193	3R	25445364	25445453	CTAGACTTGGTCAAGACCC		58	25445610	25445628	TTCAGATACGTGTACATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp97E	FBgn0039465	FBtr0085082	3	1	2	105	3R	22788173	22788897	TTCTTCAGCTTCACTGAGG		59	22788086	22788104	AATAATCGTGCGGAAAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	cav	FBgn0026257	FBtr0084557,FBtr0084559,FBtr0084558,FBtr0084556	1	4	4	60	3R	20048196	20048275	GAGAATAACCGAGGAGGAC		58	20048299	20048317	ACAAAGCTCCTTTACCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10208	FBgn0039118	FBtr0084461	1	1	1	93	3R	19599523	19599608	TAATAAACGTTATCGTGCCC		58	19599449	19599467	ATCACCCTCTTGCATTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hmx	FBgn0085448	FBtr0112715	1	1	1	178	3R	13385915	13391194	GATTGGGTTTCATATCGCAG		59	13392859	13392877	ATTATTGTTGTTCGGGCTC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG34035	FBgn0054035	FBtr0100090	2	1	1	191	3R	13238976	13239055	CAGATTATGAGTTGACCATCAC		58	13239734	13239753	AAACAACTTCCTCCGTATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mRpS10	FBgn0038307	FBtr0083053,FBtr0113237	3	2	3	288	3R	11055460	11055538	CAGGCTATAAAGACGCTCC		59	11055859	11055877	AGATATGCACCGACTTCAG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG4203	FBgn0038300	FBtr0083048	1	1	1	60	3R	11036606	11036625	AAAGGAAAGCATGAACATGG		59	11036647	11036666	GATGTCGGGTATCTTACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yellow-e3	FBgn0038150	FBtr0082759	1	1	1	160	3R	9229847	9229865	AATCGTGTTTGACTCCCTG		59	9229640	9229723	GAAAGTACAGAAAGCGGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8863	FBgn0038145	FBtr0082751,FBtr0082754,FBtr0082753,FBtr0082752,FBtr0082755	2	5	5	219	3R	9210100	9210118	TATCAGGCATGAGATGACC		58	9210301	9210409	CTTGGGATCAAAGTCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14394	FBgn0038079	FBtr0113228	1	1	6	298	3R	8521124	8521858	ATGAGATGAAGGCAATGGA		58	8522541	8522562	GGATATTATGAACACGACTACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Sbf	FBgn0025802	FBtr0082530,FBtr0082529	3	2	2	84	3R	7619363	7619450	TCCAATAGTATTATGGGCTCAC		59	7619300	7619319	TGACACCTATTTCCAAAGCA		59	NA	
Drosophila melanogaster	50	CG4089	FBgn0037838	FBtr0082281	3	1	1	299	3R	6642322	6642340	GAGCAAGTTCTATACAGCG		57	6642659	6642735	GAATCTCATTGGATCGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8358	FBgn0037727	FBtr0082081	3	1	1	60	3R	5502341	5502359	GCTTTATCAATCCATGCGG		59	5502382	5502460	CTCACTGAAGTTGTTAGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9492	FBgn0037726	FBtr0082100	1	1	1	80	3R	5496612	5496631	TCTACTCCAATCGCATTCTC		59	5496463	5496569	AGATTTCATCGTCTGCTGG		59	NA	
Drosophila melanogaster	50	CG11984	FBgn0037655	FBtr0082008,FBtr0082009,FBtr0082007	3	3	3	101	3R	4838553	4838574	GCTGATTTCCTTTCTGATATCC		58	4838074	4838492	TAACTAGCAAGAACAAGCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	Xe7	FBgn0010772	FBtr0078729,FBtr0078728	1	2	2	95	3R	1493795	1493813	GTGATCCGTACCGAAAGAG		59	1493659	1493738	CGAACTGAACATATCCTTCGA		59	NA	
Drosophila melanogaster	50	Dip2	FBgn0040466	FBtr0078893	3	1	1	61	3R	470787	470910	TACTACAATTGACGCAGTCC		59	470745	470763	CAATGGAAGATTCCTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33771	FBgn0053771	FBtr0091772	3	1	1	76	3L	22642564	22642639	AAGTCAACTCTTTGTTACCG		58	22642677	22642696	TGTTAGCTATGGTTATCGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11489	FBgn0025702	FBtr0112914,FBtr0078496	3	2	2	88	3L	22272065	22272084	ATATTTGACAACCGGTTTCG		58	22272134	22272216	TTCTCATCTTTGAGATCCCG		59	NA	
Drosophila melanogaster	50	eRF1	FBgn0036974	FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177	3	6	6	81	3L	20344765	20344786	TGGAGATTATCACGGATAAGTC		59	20344828	20345922	TTGTAGCGTAAGATACCGC		59	NA	
Drosophila melanogaster	50	CG34254	FBgn0085283	FBtr0112448	2	1	1	62	3L	18673582	18673600	GAGCAGTAAACAATCCGAC		58	18673626	18673697	CAAGGACTAGATGGCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32187	FBgn0052187	FBtr0075169	1	1	1	117	3L	17799161	17799179	AACAGGACCTAAAGATGCC		59	17798938	17799080	TTCAGGAATGTTAGCTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	roq	FBgn0036621	FBtr0075423	1	1	1	93	3L	16367764	16367974	TTCAATGCCAATAAGCAGC		59	16367689	16367707	TCATTCCACTATCGATGCC		59	NA	
Drosophila melanogaster	50	CG12355	FBgn0040805	FBtr0113333	1	1	2	75	3L	15487705	15487724	CAATAGGAAGATATGCCGTG		58	15486664	15487668	CGATCTAACCATTTGTACCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	Acp70A	FBgn0003034	FBtr0075836	1	1	1	106	3L	13294755	13294773	ATTCTTGGTTCTCGTTTGC		58	13294843	13294926	ACTTATCACGAGGATTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32086	FBgn0052086	FBtr0076147	2	1	1	88	3L	11576401	11576420	CAAGTGGACTTTATGGATCG		58	11576281	11576299	ACACCGAAAGTTATGTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6216	FBgn0036139	FBtr0076220	3	1	2	192	3L	11143173	11143247	AAATGTGTTGTGGCAAGAC		59	11138519	11138538	TTATTTCGTTGATGGCTGAG		58	NA	
Drosophila melanogaster	50	CG33703	FBgn0053703	FBtr0091691	3	1	1	102	3L	9505330	9505348	CTTGAATGCTACATGTCCG		58	9505192	9505210	CATGTAAACACCGTTTGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG16986	FBgn0035356	FBtr0072930	2	1	1	68	3L	2600896	2600914	ATTCGCTAAACACATCACC		58	2600946	2601025	TTGACCTTCTGTAGGTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cht2	FBgn0022702	FBtr0072795	2	1	1	102	3L	1753509	1753527	ATCATGTGCTACGACTACC		58	1753298	1753446	CAATGGAGAATTTCACACTCAG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-1175a	FBgn0083005	FBtr0113527	2	1	1	74	2R	18494649	18494668	GGCAGATTAAATGATGAGCA		58	18494705	18494723	GTGTTTCTGAAGCATCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11073	FBgn0034693	FBtr0071797	3	1	1	60	2R	17981217	17981235	TGTGATTGCTTGGGATCTG		59	17981175	17981196	CTCAGCCTGATCCTTATTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6393	FBgn0034685	FBtr0071752,FBtr0071751,FBtr0071753,FBtr0071750	1	4	4	68	2R	17956172	17956254	AATTGAATTCCCAGCAGTG		58	17956286	17956304	ATGTACTGGTGGAATTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30289	FBgn0050289	FBtr0071697	1	1	1	100	2R	17408612	17408690	GTACTCAGATTATGTTAGGCC		57	17408532	17408551	GACCATATTCTGTTTCACCC		58	NA	
Drosophila melanogaster	50	CG15653	FBgn0034578	FBtr0071545	2	1	1	217	2R	16947878	16947898	GCTGTGATGTACATGAAATGG		59	16947624	16947699	GTTCCTTTATCCTTGCTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9236	FBgn0034558	FBtr0071516	2	1	1	114	2R	16768652	16769708	TATGATTTCGATCAGGACGG		59	16769785	16769803	TTACCTTGTCGGCAATCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gr57a	FBgn0041240	FBtr0086241	3	1	1	90	2R	16573353	16573371	GTCGAATCCCTAATGTCGT		59	16573226	16573299	ACAAACCGATAACTTTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10073	FBgn0034440	FBtr0086523	1	1	1	82	2R	15270490	15270559	TAACACAGAGGCTTATGCC		59	15270605	15270623	CATTGCTCTCCGTATAGCT		58	NA	
Drosophila melanogaster	50	resilin	FBgn0034157	FBtr0087025	3	1	2	217	2R	12669072	12669692	TATTGTGGAGTATGAAGCCG		59	12669872	12669890	CACTAGGTCCCAAATCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10265	FBgn0033990	FBtr0087421,FBtr0087422	3	2	2	86	2R	10881076	10881094	TACATAGTAACGCCGATCG		59	10880925	10881026	GATGTGAATCTCCTGTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7639	FBgn0033989	FBtr0087423,FBtr0087424	2	2	2	82	2R	10876490	10876508	GGCCAATGATCTACAACTG		58	10876365	10876444	TGCTGAAAGACATTTCAGG		57	NA	
Drosophila melanogaster	50	CG12853	FBgn0040747	FBtr0087406	2	1	1	74	2R	10821196	10821214	CAAGGGTGCTAAGAAAGGA		59	10821252	10821270	TTCGATTCGGAAGTCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	BEAF-32	FBgn0015602	FBtr0087442,FBtr0087441	3	2	2	60	2R	10659450	10659469	GATTAGCGAGGACATTAAGG		57	10659490	10659510	TATAGGACTATAGCACAGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tra2	FBgn0003742	FBtr0089617,FBtr0089620,FBtr0089618,FBtr0089621	2	4	7	82	2R	10491538	10491556	TATAAACACAAGCGATCGG		57	10490992	10491492	TAATCGTAGTCAGACCTGC		58	NA	Nonspecific
Drosophila melanogaster	50	CG17574	FBgn0033777	FBtr0113077,FBtr0113078	2	2	4	226	2R	8739084	8742604	GGATGTGATTGAAGCAATCAG		59	8738373	8738393	AGGCTATAGATAATCCAACCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13157	FBgn0033732	FBtr0087925	3	1	1	111	2R	8304374	8304676	GATGCTATTGATGCCAAGC		59	8304751	8304769	CTGAACTTTCACGACTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8407	FBgn0033687	FBtr0087985	3	1	1	61	2R	8041214	8041411	AATACTCATCGAACTACGAGC		59	8041432	8041452	GAACTTCTTGTCCATGTTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34228	FBgn0085257	FBtr0112421	1	1	1	106	2R	7539478	7539496	GTAACGCCGTTTACATCAC		59	7539566	7539652	TATGGATGGACTGTATGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	luna	FBgn0040765	FBtr0088210	3	1	1	213	2R	6870976	6877148	CAAAGAACGCATACAGGTG		59	6870781	6870799	ATGGCCCTGCTTAAATCTC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	cag	FBgn0017414	FBtr0088239	3	1	1	75	2R	6781293	6781369	GCCAAGAGGTTTAACATTGG		59	6781237	6781255	ACAGACCCTCTTTAATCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or46a	FBgn0026388	FBtr0088330	2	1	2	189	2R	6027758	6027868	TGTTATCTGACGAGAGGCT		59	6028077	6028095	ATAAAGAGGAGCGCAATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12128	FBgn0033473	FBtr0088393,FBtr0088394	1	2	2	69	2R	5915095	5915113	ACAAGGCAATAGAACCAGG		59	5915146	5915228	TGCTTTCTACAGCTCTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alc	FBgn0033383	FBtr0088624,FBtr0088625	3	2	2	80	2R	5023198	5023275	CTATCGTGTGAACCCACTC		59	5023136	5023154	GCCATCCTTGATAGACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30355	FBgn0050355	FBtr0088726	3	1	1	63	2R	4567041	4567059	ATGTAGAACAAACGAAGCC		58	4566939	4567015	CATCTCATGTCAGTACTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30379	FBgn0050379	FBtr0088851	2	1	1	205	2R	3827495	3828552	ATAAGGCTTCACTGTACGC		59	3828771	3828790	CAACGTGAACAGTAATTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18812	FBgn0042135	FBtr0088937	2	1	3	283	2R	3609632	3609650	CAATGCTAGAAGGCATGAC		58	3607268	3607349	AATCAGATATAGCAAGGCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1360	FBgn0033195	FBtr0088951	1	1	1	86	2R	3477155	3477173	AATTTGCTGTGGAACTGTG		58	3477027	3477109	CCTACAGGTGGTTATGTAATAGG		59	NA	
Drosophila melanogaster	50	CG11060	FBgn0033149	FBtr0089045	3	1	1	60	2R	3064598	3064711	GGACATTCAGAATCTAAGTCC		57	3064733	3064751	CAAGCGGTTCTTACTAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp42Ed	FBgn0029507	FBtr0086181	1	1	1	83	2R	2898218	2898236	GTAGTCTTCCTGGTAGCCT		59	2898084	2898171	CATGACCACAGAGTACGAG		59	NA	
Drosophila melanogaster	50	CG17683	FBgn0040002	FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300	2	4	5	80	2R	19470	19547	GTGTAATCACTTCAGTTGAGG		58	19586	19607	CTAAATCAAGGAGATCGTACTG		58	NA	
Drosophila melanogaster	50	Hr39	FBgn0010229	FBtr0081481,FBtr0081480,FBtr0081479,FBtr0081478	3	4	4	107	2L	21255223	21255241	TAGTTTGGCAGGAACTTCG		59	21255310	21255554	TCTACATCCATGATTTCCTGC		59	NA	
Drosophila melanogaster	50	CG10561	FBgn0002036	FBtr0081155	3	1	1	281	2L	19114564	19114640	GAGCCAAGTTTGGAATTAGAC		59	19114945	19114963	GTTATCCGCCTGTAGAACC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Catsup	FBgn0002022	FBtr0081143	2	1	1	60	2L	19042313	19042386	AGCCGGATTTGGATATGAG		59	19042409	19042428	CTGATAAGAAGAGTTGAGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31821	FBgn0051821	FBtr0080809	2	1	1	132	2L	15901512	15901531	TTTATCCGCTTCATAGAGCG		59	15901346	15901419	GCGGGATTGTATTAATTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ms(2)35Ci	FBgn0011239	FBtr0080731	1	1	2	83	2L	15293140	15293219	GATTGCCTTTGTATCTGCG		59	15293266	15293284	TAATGGGTAATCGGAGTGG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG33309	FBgn0053309	FBtr0080674,FBtr0100163	2	2	2	295	2L	14810811	14810889	CGATAATAGCCAACGAGAC		57	14811148	14811166	GGTTAAAGGTTTCGAACGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	He	FBgn0028430	FBtr0080616	1	1	1	104	2L	13972600	13972797	AATACATAGCAACCGTCCA		58	13972514	13972532	GAAGTGGATTCCGTTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16974	FBgn0032479	FBtr0080489	2	1	1	83	2L	13187087	13187105	TTTCGAGAATCGACAGTGG		59	13186954	13187041	CGATGTACAGTCGTAATCCT		58	NA	
Drosophila melanogaster	50	Sfmbt	FBgn0032475	FBtr0080492,FBtr0080491	3	2	2	111	2L	13172400	13172418	ACCTTTCATCCATATGCCC		59	13172242	13172325	TAACAGAACCAATCCGACC		59	NA	
Drosophila melanogaster	50	pdm2	FBgn0004394	FBtr0080393,FBtr0080392	1	2	2	108	2L	12680828	12684543	TATCAGACTGCGGAAAGAG		58	12684615	12684633	TCAGAGTCTAGTTCCCTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr30B	FBgn0032125	FBtr0079831	3	1	1	61	2L	9543255	9543273	ATGATCACAACGGTTTCGA		59	9543298	9543316	CAACGGTATCTTGATGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sema-1a	FBgn0011259	FBtr0110930,FBtr0079691	2	2	3	94	2L	8660492	8660510	CTCTGTAGTCATCGAGGAG		58	8660568	8660659	CTTTGGGTTGATCGTACTG		58	NA	
Drosophila melanogaster	50	xl6	FBgn0028554	FBtr0079368	1	1	1	93	2L	6919584	6919602	ACGATAAGTGCTACGAGTG		59	6915386	6919527	CTGAATGAGTTGCTTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13983	FBgn0031792	FBtr0079285	3	1	1	127	2L	6264288	6264363	AATGCCTTCTCCAAGATCG		59	6264179	6264199	CTATCCGATTCCTGATTCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	obst-E	FBgn0031737	FBtr0079164	1	1	2	117	2L	5765983	5766001	AATCAGTGCTCTATTGTGC		57	5763292	5763310	ACACTCTGTGTAAGAGTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3887	FBgn0031670	FBtr0079000	2	1	1	79	2L	5011326	5011420	TCCTTTACTGCTACTCCTG		57	5011463	5011481	AATTTGCGGATACTTCTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Marcal1	FBgn0031655	FBtr0078992	1	1	1	91	2L	4957676	4957755	GACTGGAATCCTAGCACTC		59	4957810	4957828	TGAGCAATCAGATAGCGAC		59	NA	
Drosophila melanogaster	50	Or23a	FBgn0026395	FBtr0077698	2	1	1	61	2L	2654850	2654922	GCTGTATAGATTACTCGATGTG		58	2654944	2654962	TAAACTGCACCATCATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pi3K21B	FBgn0020622	FBtr0078132	1	1	1	152	2L	299903	302028	AGGACAAGTACATTGAGCG		59	302144	302162	CATCCTTTAGCAACCAGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	mRpL10	FBgn0031231	FBtr0078124	2	1	1	81	2L	203883	204003	TACAAAGAAGCCTTTCCCTG		59	204045	204065	CGCTGTATATTGATCTTACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14617	FBgn0031191	FBtr0100652,FBtr0100651,FBtr0077352	3	3	5	129	X	21887458	21887783	GATTGCTTCAACAGCTCTG		59	21887875	21887894	TGTTTGAGGAGTAGTTTGGT		58	NA	
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077204,FBtr0077206	1	2	8	85	X	21251051	21251069	ATGAAGTCCAGCTTCTACG		59	21251117	21251692	CCAAAGGATCTTAGCCTCTC		59	NA	
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074573,FBtr0074575,FBtr0074574	3	3	6	167	X	18301908	18302558	CCTACCAATGCGAGATGAG		59	18286873	18286892	CCAAGGTGTAGTCCATATCG		59	NA	
Drosophila melanogaster	50	CrebB-17A	FBgn0014467	FBtr0074555,FBtr0074556,FBtr0074554,FBtr0112878	3	4	7	142	X	18267444	18267464	CGTACAATAAGATCTTCACCG		58	18269361	18269379	ATCCAATTGCATCAGGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Yp2	FBgn0005391	FBtr0071424	2	1	1	70	X	9946193	9946211	TCAACCTGAACACTTTGGT		59	9946141	9946159	GAAGATGGTGACCTCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297	2	4	6	118	X	9005030	9005125	CGAGCATGGATTTAATCCAG		58	9005449	9005467	GAATCTGTCGGATGAGGTC		59	NA	
Drosophila melanogaster	50	norpA	FBgn0004625	FBtr0070651,FBtr0070650	3	2	4	189	X	4248570	4251077	AACCTGATGAAGCATTGGA		59	4251230	4251248	ACTTGTCGAAGGTGAACTG		59	NA	
Drosophila melanogaster	50	CG3588	FBgn0025643	FBtr0070548,FBtr0100550,FBtr0070549,FBtr0070547	1	4	4	293	X	2816306	2816324	TTGAGTCCCTTGGAAAGAC		59	2816666	2816684	ATTGGAGCTGATGGAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2658	FBgn0024992	FBtr0070503,FBtr0070502	3	2	2	133	X	2590887	2590966	CTCAGCATGGATTCATTTAACC		59	2590775	2590794	ACAAATTCCTTCACCTCCTG		59	NA	
Drosophila melanogaster	50	RpL36	FBgn0002579	FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156	1	4	4	114	X	522710	522792	TTGAAGAACATCCAAACCC		57	522614	522632	TATCCTTGGACACCTTCAG		58	NA	
Drosophila melanogaster	50	CG41012	FBgn0085553	FBtr0113966	3	1	1	126	U	6176480	6176498	GTAATCGGTCCCGTAATCG		59	6176268	6176390	CAATACCGTACCAGGAACC		59	NA	Nonspecific
Drosophila melanogaster	50	krz	FBgn0040206	FBtr0085877	1	1	1	60	3R	27875116	27875135	CGTCTAGCACTCTCATTACC		59	27875075	27875094	TAGTGGACCATAATACCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34362	FBgn0085391	FBtr0112583	1	1	2	84	3R	23876021	23901409	CAAGCAGGAACAATTCCAC		59	23901457	23901475	GAATGGTGTGAATGCTTCG		59	NA	
Drosophila melanogaster	50	scrib	FBgn0026178	FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085019	2	5	7	88	3R	22406736	22415639	CAACTACAGTCAACACCTG		57	22415691	22415709	TTAGGCACTTTAGTCGGAG		58	NA	
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0084927	3	6	7	166	3R	21532677	21532695	GACATCAGGTGCTCTACTC		59	21532199	21532547	ATGTTCCAACATATGCGTC		58	NA	
Drosophila melanogaster	50	CG7059	FBgn0038957	FBtr0084221,FBtr0084219,FBtr0084220	2	3	3	139	3R	18217576	18217650	CACATTGAGGGAATCTCCA		58	18217751	18217771	CGCCTAATATACTCCTGATCC		59	NA	
Drosophila melanogaster	50	CG13409	FBgn0038926	FBtr0113264	2	1	2	124	3R	17856452	17856547	CATTGTCATATGCTGGTATGC		59	17856348	17856366	GGGTGAAACACCTACTGTC		59	NA	
Drosophila melanogaster	50	CG7907	FBgn0038887	FBtr0113262,FBtr0113261	2	2	2	106	3R	17231514	17231532	CAAGATCAACGTGTTCACC		59	17231600	17231709	CAACCAAATCCTTGAAGACAG		59	NA	
Drosophila melanogaster	50	cpo	FBgn0000363	FBtr0083534,FBtr0083536,FBtr0100377,FBtr0083535,FBtr0083537	3	5	6	176	3R	13793462	13793481	ACGCCATAATGGAGAATCAG		59	13832726	13832809	CTTCATAGCCCTCATAGGC		59	NA	
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082802,FBtr0082801,FBtr0082806	2	3	8	96	3R	9488692	9488710	ATCATCCTCTCGTTATGGC		58	9488769	9491189	GTAATCCTTGAGATCCTGCC		59	NA	
Drosophila melanogaster	50	SelR	FBgn0037847	FBtr0082293	3	1	6	134	3R	6689538	6691232	TTCGTGAAGAAACGTATACG		58	6689423	6689441	GTTCACGAACTCAATGGAG		58	NA	
Drosophila melanogaster	50	Nmdmc	FBgn0010222	FBtr0081996,FBtr0081997	2	2	2	289	3R	4868835	4868854	GAATGTCAGTCTACCGATGG		59	4868498	4868583	GGCGAACTTCTTCAAAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15594	FBgn0037421	FBtr0078604,FBtr0078603	3	2	2	61	3R	2113813	2113832	CTACAACCATCGCTATAACG		58	2113853	2113874	GAGGATTCGGTTTGTAATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Cat	FBgn0010215	FBtr0070038	3	1	1	80	3L	23318919	23319003	ATATGTACAGCTCGAGAAGC		59	23318858	23318876	ACGGAATAACTCCACTTGC		59	NA	
Drosophila melanogaster	50	CG14084	FBgn0036855	FBtr0074990,FBtr0074989	3	2	2	61	3L	19255133	19255152	AAATGTGCTACATGTTCCTC		58	19255175	19255194	CTTTAGGGTTATCCAGAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trl	FBgn0013263	FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704	2	8	9	236	3L	14747639	14750011	TGCTAAAGAATACACCATGC		58	14747422	14747440	GTTGTGGAATCATGTGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	ImpL1	FBgn0001256	FBtr0075843,FBtr0075842	2	2	2	86	3L	13376186	13376204	CTACTATGTAAAGCGCACC		57	13376254	13376272	ATGGGAATGGCCAAATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34241	FBgn0085270	FBtr0112435	1	1	1	71	3L	12121210	12121228	TACGTCTTCAAATCAGCCC		59	12121319	12121337	CTGTAGAACTCCGTGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Atg18	FBgn0035850	FBtr0076693,FBtr0076691	2	2	3	88	3L	8180667	8180921	AGAACATAACTTCCCTGGC		59	8180973	8180991	GTAGATCTTGTCCAGGGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Patj	FBgn0067864	FBtr0072781,FBtr0072780,FBtr0072779	2	3	3	113	3L	1800627	1800645	AGTAAGGGACTCCCTAGAC		58	1800782	1800800	GTGTAGTACTTGTGACGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	gek	FBgn0023081	FBtr0072287	3	1	1	105	2R	19979778	19979875	TCTAGAACAAGTGGATGCA		58	19979691	19979709	ATTATTGCTTAAGCCGTCC		57	NA	
Drosophila melanogaster	50	CG9875	FBgn0034850	FBtr0072006	1	1	1	95	2R	19245690	19245769	TTCCTGAACAAGACTGCAG		59	19245828	19245846	TTCGAGTTCCAGTTCTGTG		59	NA	
Drosophila melanogaster	50	CG30389	FBgn0050389	FBtr0071633,FBtr0071632	2	2	3	99	2R	17043171	17043192	GGTCTGTTTATTCTTCATACCC		58	17043019	17043114	CAAACAGATACCCTTATCTGTG		58	NA	
Drosophila melanogaster	50	betaTub56D	FBgn0003887	FBtr0086536,FBtr0086538,FBtr0086539,FBtr0086537	2	4	4	67	2R	15335671	15335690	CTCTACGATATCTGCTTCCG		59	15335623	15335641	ACAAGATGGTTCAGGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsf	FBgn0001222	FBtr0110964,FBtr0086782,FBtr0110966,FBtr0110965	2	4	4	60	2R	14018486	14018504	CCAATGACAGCATAAGCAG		58	14018381	14018402	TGATAGGAAATCAGTTCAGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	spin	FBgn0086676	FBtr0089593,FBtr0089589,FBtr0089592,FBtr0089590,FBtr0089591	1	5	5	95	2R	12019320	12019339	TTATCTCGGATCTGTTCGTG		59	12019397	12019824	CCACAATGTATCCCAGACC		59	NA	
Drosophila melanogaster	50	BEAF-32	FBgn0015602	FBtr0087442,FBtr0087441	2	2	2	60	2R	10659449	10659469	AGATTAGCGAGGACATTAAGG		59	10659489	10659509	ATAGGACTATAGCACAGTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cg	FBgn0000289	FBtr0112795,FBtr0112794,FBtr0112796,FBtr0087527	2	4	7	97	2R	10064189	10064692	CAAGAACTATCTGCTAGTGGA		58	10064751	10064769	CATTGGTCAACGTATGGTG		58	NA	
Drosophila melanogaster	50	CG8776	FBgn0033764	FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869	2	5	5	105	2R	8548251	8548272	GCATAAGGTCAACTTCTATAGC		58	8548111	8548185	CAGCATTACCAGAAAGCTG		58	NA	
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	1	9	9	87	2R	5738879	5738966	CCGTTAAGGAGATCCATGTC		59	5738811	5738829	ATATCGATGACAGTTCCGG		58	NA	
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	1	9	9	90	2R	4568146	4568164	AGATCAAGACCTGCTTGTG		59	4568217	4568299	ATATCACGGTAGTCCATGAC		58	NA	
Drosophila melanogaster	50	kermit	FBgn0010504	FBtr0088813,FBtr0088814,FBtr0088812,FBtr0088811	2	4	4	63	2R	4035571	4035589	TAATCCACGACTTCTCCAG		58	4035526	4035544	GATATGTCAAAGCACTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0089016,FBtr0111061,FBtr0089017,FBtr0089019,FBtr0111074,FBtr0089018	2	6	60	123	2R	3219877	3231794	ACAAGTTAATGTACCTCCCA		58	3219773	3219792	TTTCTTCCATGTAACTTGGG		57	NA	
Drosophila melanogaster	50	Pect	FBgn0032482	FBtr0080440,FBtr0080441,FBtr0080439	1	3	4	103	2L	13208267	13208285	ATCAAATGGGTGGATGAGG		59	13208351	13208430	GTAATGTCATCTCCATGCAC		58	NA	
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0100488	3	1	10	92	2L	10817138	10822979	GAGTTTACAGAGACGGTGG		59	10817064	10817083	AATGTTCATCTCCACCACAG		59	NA	
Drosophila melanogaster	50	slmo	FBgn0029161	FBtr0079218,FBtr0079217,FBtr0112945	2	3	3	72	2L	6047423	6047441	AACAGATGGTGCTGAAGAC		59	6047369	6047387	TCATAGTAGAGCACCTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31658	FBgn0051658	FBtr0078008	3	1	1	95	2L	811195	811268	GAACTCGAGATTGCTATGG		57	811327	811345	CTGCTTCATCATACATCCC		57	NA	
Drosophila melanogaster	50	CG11454	FBgn0031224	FBtr0078116	1	1	1	60	2L	143790	143808	AGAAAGTCACCATCAAGCA		59	143832	143850	AGACGACTTTGGTTGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7766	FBgn0030087	FBtr0114595,FBtr0071352,FBtr0071351,FBtr0114596,FBtr0114594	3	5	5	200	X	8996260	8996539	AAACCAATCATGGTGAACC		58	8996078	8996097	CCAATTCCTTGCTATTCGAC		58	NA	
Drosophila melanogaster	50	Gfat2	FBgn0039580	FBtr0085297	3	1	1	238	3R	24163798	24163816	ATTTCGCTGGTTATGTTCG		58	24163376	24163596	AGCTCCTTGACTTTCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085146,FBtr0085143,FBtr0112834,FBtr0085139	3	4	12	113	3R	22892377	22892853	CCTCTTTAATAGGACGGACAC		59	22892130	22892148	TCATTCCTCAAAGGACGAG		58	NA	
Drosophila melanogaster	50	beat-Va	FBgn0038087	FBtr0082688	3	1	1	186	3R	8669306	8672706	TAATTGACTACCCAATCGCA		59	8669081	8669099	TAAATCGGACTCGTCAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14605	FBgn0037486	FBtr0081602,FBtr0081600,FBtr0081601	1	3	3	80	3R	3044630	3044726	GTATCTGATAATAGCGTTCGTG		58	3044571	3044590	CACAAATCCCACTGTTATGC		59	NA	
Drosophila melanogaster	50	CG31550	FBgn0051550	FBtr0078685,FBtr0113409,FBtr0078684	1	3	3	245	3R	1314709	1314728	CTAAAGGAGGACAACATTGG		58	1314989	1315100	ACGTGGATTGTTCAAAGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	tacc	FBgn0026620	FBtr0089955,FBtr0089951,FBtr0089953,FBtr0089949,FBtr0089952,FBtr0089954,FBtr0089950	3	7	7	126	3R	563224	563242	GATACAGCCAAGAAATGGG		58	562961	563040	CCTCCGTATTAGTGTTGGA		58	NA	
Drosophila melanogaster	50	CG33769	FBgn0053769	FBtr0091770	2	1	1	209	3L	22641078	22641149	GTTGTCATAAAGCAGAGCG		59	22641322	22641340	GTAGACACTTTGGTAGGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11249	FBgn0037115	FBtr0078429	2	1	1	90	3L	21665740	21666030	GATCAAACACCATCTATTGGG		58	21666082	21666100	CTTTACGATCAGGCTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020	2	17	17	87	2L	12723992	12724013	CAAGACCTATCAGATCAGACAG		59	12724061	12724214	TTTGAGCACCTTAATGCCA		59	NA	
Drosophila melanogaster	50	mt:tRNA:G	FBgn0013694	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me18S-U1356b	FBgn0082948	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-C3420a	FBgn0083988	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG40500	FBgn0069968	FBtr0111197,FBtr0111196,FBtr0111198,FBtr0111199	2	4	4	208	X	22282268	22282286	CAGTCTCAGGGACATTCAC		59	22282912	22282930	TGACACAGATGTGATAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210	1	5	8	85	X	21247686	21250626	ACATGACGCTTATGAAATGG		58	21250674	21250692	AAAGTGGCCATAGAAGGTC		59	NA	
Drosophila melanogaster	50	Mgstl	FBgn0025814	FBtr0077243	2	1	2	104	X	20914129	20914147	TTGTTGAATCCCAGACCAG		59	20914215	20914233	GATTGGAGAGGCTTAGCAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG1304	FBgn0031141	FBtr0077271	1	1	1	60	X	20836221	20836239	GAACTACGTCTTAACCGCT		59	20836179	20836197	AACGGAATTGCCATTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572	1	5	5	80	X	20644230	20644248	CGCTAATATACAGGGTGGT		58	20643790	20644186	GACGCACTAACCTAAATCG		58	NA	
Drosophila melanogaster	50	CG33498	FBgn0053498	FBtr0089611	2	1	1	72	X	20096695	20096713	ATTAAGCAGGAGTTCGAGC		59	20096246	20096264	TGTAGTCACCAGAGGTCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14222	FBgn0031043	FBtr0074763	3	1	1	130	X	19516693	19516775	AATAATGGGCTACATCATGGG		59	19516583	19516601	CCTCCAGGAAACTCATGAG		59	NA	
Drosophila melanogaster	50	CG7889	FBgn0031003	FBtr0074675	3	1	1	262	X	19138595	19138613	ACTATTTGTACTCCCGACG		58	19138900	19138918	AAGTGGGTTCCAGATAGTG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG33253	FBgn0030992	FBtr0074668	2	1	1	187	X	19080234	19080323	GGAGATCAAGGACGTATCC		58	19080474	19080582	TTTGCAAGTATCGCAACTG		59	NA	
Drosophila melanogaster	50	CG15059	FBgn0030905	FBtr0074585,FBtr0074584	3	2	2	72	X	18153276	18153294	CAGATGCTAGGATCAGTCC		58	18153222	18153240	TTTATCTTGGACCTACCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32557	FBgn0052557	FBtr0074466	2	1	1	297	X	17748761	17749267	TACCTCCAGTCCAAATTCC		58	17748482	17748500	CGATTGGATACTGGGTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	l(1)G0222	FBgn0028343	FBtr0074490,FBtr0074489,FBtr0074488	3	3	3	114	X	17468998	17469093	AGCCCAAGGAAATCATCTG		59	17468902	17468922	TTTGACTGGGATCTTAGTACG		59	NA	
Drosophila melanogaster	50	CG12996	FBgn0030835	FBtr0074419	1	1	1	139	X	17144638	17144656	GATTAGCAGGAACCTGGAC		59	17144759	17145085	AAATTCGAACTCTGATGGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	baz	FBgn0000163	FBtr0074388,FBtr0111000	2	2	2	81	X	17085681	17085699	CGCAGATGCACTTAATGAC		59	17085744	17085829	GGTAGTGTTGGAGACATCG		59	NA	
Drosophila melanogaster	50	CG9104	FBgn0030800	FBtr0074348	3	1	1	131	X	16777629	16777647	TACCTGAAGATCGTCATGC		59	16777428	16777535	ATAAGGCAGGATCTGTTGTG		59	NA	
Drosophila melanogaster	50	ppk28	FBgn0030795	FBtr0100474,FBtr0074335	2	2	2	83	X	16701916	16701935	TGCACTTCTACTACATGACC		59	16701979	16702062	CCGTATTAGACAAGAATTCGG		58	NA	
Drosophila melanogaster	50	CG4756	FBgn0030788	FBtr0074331	2	1	1	61	X	16682608	16682629	GAAACACTTCAAGACAATACCC		59	16682650	16682669	CCATGTACACGAAGAATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8239	FBgn0030683	FBtr0074087	3	1	1	163	X	15643975	15644055	GAATGAAGTTCATCGATTGGC		59	15644180	15644198	TATCGTAGAGTCGGGACAG		59	NA	
Drosophila melanogaster	50	CG5541	FBgn0030603	FBtr0073958,FBtr0073959	2	2	2	88	X	14944381	14944454	TCTCCTTCAAGCTTGTCTC		58	14944506	14944524	ATCTCTGATTTGGGCTTCC		59	NA	
Drosophila melanogaster	50	Flo-2	FBgn0024753	FBtr0073954,FBtr0073952,FBtr0073950,FBtr0073953,FBtr0073951,FBtr0073949	2	6	6	78	X	14825993	14826012	ATATTGTACTCGAATCGCTG		57	14826114	14826133	ATTAGGACAATCTCATCGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1461	FBgn0030558	FBtr0073908	2	1	1	143	X	14157989	14158073	GCCGATGAGATCTATGAGC		59	14158180	14158198	TATGATCCAACCCATTCGC		59	NA	
Drosophila melanogaster	50	CG33249	FBgn0053249	FBtr0073925	3	1	1	180	X	14124658	14124739	TGGTGGTCTCATCAAACTG		59	14124496	14124514	CATCATGTCCATGGAACTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1840	FBgn0030351	FBtr0073571	1	1	1	63	X	11782658	11782676	TTCGTGGGTATATGGTTCG		59	11782762	11782780	TTCCAGTGAATGGAGACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33235	FBgn0030307	FBtr0073545	1	1	1	60	X	11381541	11381561	AATAATTCTAGGCTCGGACAG		59	11381501	11381520	CTCATCTTTGCAGAGATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1545	FBgn0030259	FBtr0073395	3	1	1	229	X	10953389	10953408	CAACCATAACTGCAATACAC		57	10951821	10952403	ACAGTACGGATAAATTGGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG12626	FBgn0040851	FBtr0073398	2	1	1	88	X	10931584	10931602	CATCATCGAGGATCTCAGC		59	10931514	10931532	AGTGATCCTTGAAGTCGTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	c12.2	FBgn0040234	FBtr0071321	3	1	1	114	X	9217642	9217660	AGAACATCTATAGGCGACG		58	9217738	9217809	CCATTGAACCTGTACATCG		58	NA	
Drosophila melanogaster	50	CG17440	FBgn0030120	FBtr0071328	3	1	1	91	X	9162927	9163011	TATTTCAGATTCTGCCGCA		59	9162854	9162873	CATGTTGAGCTCTAGATGCT		59	NA	
Drosophila melanogaster	50	CG4040	FBgn0030076	FBtr0071283	2	1	1	81	X	8946413	8946492	CACATTCATATCACCCGTG		58	8946537	8946555	ACTTGTCGTTGTTCTTCAG		57	NA	
Drosophila melanogaster	50	CG33181	FBgn0053181	FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451	3	5	5	83	X	8409419	8409506	TCAAAGGAGTTCCCTATGC		58	8409553	8409571	CAGCAGCAAAGATGAACAG		59	NA	
Drosophila melanogaster	50	Nek2	FBgn0029970	FBtr0071142	1	1	1	60	X	7785278	7785298	GTGCAATACTACCATCATCTG		58	7785238	7785257	ACTCCATAACAATGTACACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15326	FBgn0029965	FBtr0071149	3	1	1	260	X	7759226	7759244	ACATCTTATAGCACCCTCG		58	7758713	7758731	CAGAGTGGATGTGGTAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1409	FBgn0029964	FBtr0071086	1	1	1	67	X	7752491	7752509	ATAGATACGCACTACCAGC		58	7752540	7752558	TGAATGTAGAAGCTACCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CBP	FBgn0026144	FBtr0071053,FBtr0071052	2	2	2	118	X	7235526	7235614	ACTTGTTTAAGGCTGTGGA		59	7235696	7235714	TATCACAGCGAATGAAACG		58	NA	
Drosophila melanogaster	50	CG18155	FBgn0029945	FBtr0071051	3	1	1	117	X	7223487	7223505	TTCAATTGTATATGGCCGC		58	7223669	7223687	TGTATAGCTATCCACAGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG4575	FBgn0029920	FBtr0071000	3	1	1	75	X	6844572	6844590	TACGGAAGAATATGGAGGC		58	6844848	6844866	CTCGTAGTATGCGGTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL17	FBgn0029897	FBtr0070982,FBtr0070981,FBtr0070980,FBtr0070983	3	4	4	148	X	6635947	6635965	ATCAATCCCTACATGTCGT		58	6635817	6635835	GAACGCAACATCTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL17	FBgn0029897	FBtr0070982	2	1	4	203	X	6638071	6638090	AAATCAACACGTCGAATTGG		59	6636285	6637104	GTGTTCTTGAAGTGCACAC		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	vanin-like	FBgn0040069	FBtr0070879	2	1	1	80	X	6094739	6094757	CCTGCAAGATAGTTTGCTG		58	6094614	6094695	TGGACATAGCTATCTTCCG		58	NA	
Drosophila melanogaster	50	CG33080	FBgn0053080	FBtr0070845,FBtr0070844	1	2	2	141	X	5604996	5605517	TATTTCTGATCGGCTATGC		57	5604873	5604891	AATTGACCCGATATCACCT		58	NA	
Drosophila melanogaster	50	CG11473	FBgn0029779	FBtr0070857	3	1	1	74	X	5524057	5524078	CCATTATTGTGGGATTCATCAG		59	5523726	5523744	AGATGTCGTTCAGATTGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	RhoGAP5A	FBgn0029778	FBtr0070785,FBtr0070784	3	2	2	229	X	5511349	5511367	GTATCCCAGCTTTATGGCA		59	5510964	5510984	GAGGAGAGCATAAAGATCTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12730	FBgn0029771	FBtr0070780	2	1	1	89	X	5411841	5411859	ACTCTCCCTGGATATTGGA		58	5412111	5412129	TAGTTTCCATAGGCCTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	TrxT	FBgn0029752	FBtr0070755	3	1	1	115	X	5205305	5205323	ACAACGTTAATGAGGTGTC		57	5205141	5205159	ACGTCTGTTGAATGATGAG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12682	FBgn0029729	FBtr0070716	2	1	1	61	X	4720565	4720583	GTCTATAGGCGGAATCGTC		59	4720608	4720626	AACTGTCTAATGGGCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12179	FBgn0025388	FBtr0070695,FBtr0070694	3	2	2	165	X	4525985	4526061	CAGCCAATACTCGAGTTAGG		59	4525839	4525858	TGTCTGACCTTGTTGAAGAC		59	NA	
Drosophila melanogaster	50	CG2901	FBgn0029679	FBtr0070605	2	1	1	81	X	3724416	3724437	CACCATCCTTTATCACAATCTG		59	3724477	3724721	TATGAAGCGTCTAGTGATCTC		58	NA	
Drosophila melanogaster	50	CG13021	FBgn0029669	FBtr0070570,FBtr0070571,FBtr0070572	3	3	3	60	X	3409538	3409556	TGTACGAATCGGTAATCCG		59	3409579	3409598	GGATCCTTCGTCCTTATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32791	FBgn0052791	FBtr0070588	2	1	1	103	X	3413934	3413952	AAAGATCTCGAGGAACGAG		58	3409012	3413867	CCGGATGAAAGTGTATGCT		59	NA	
Drosophila melanogaster	50	CG10802	FBgn0029664	FBtr0070568	2	1	1	61	X	3377503	3377521	GACAGGGAGTTCAAGTACG		59	3377545	3377564	TGAATGTAAGAGACAGTGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2694	FBgn0024991	FBtr0070482,FBtr0070483,FBtr0070481	1	3	3	103	X	2609385	2609403	GAAACCGACATGAAGACAC		58	2609550	2609568	ATCTCGTTCAGATTCTGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	ptr	FBgn0003159	FBtr0070404,FBtr0070403,FBtr0070402	1	3	3	89	X	2243030	2243048	GAGTAAGCTCTTGTCCCTC		59	2242892	2242910	TACACCTGACTAGCATCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3835	FBgn0023507	FBtr0070383,FBtr0070382,FBtr0070381	3	3	3	272	X	2038240	2038324	TTCAAGTTCCTGAACTCCC		59	2038560	2038578	AATGTTGTAGAAGTCCCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11417	FBgn0024364	FBtr0070212	2	1	1	61	X	1249978	1249996	GAAGGAGCTTGAGCTACTG		59	1250021	1250039	GACTGAAGTGTTGCTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CDC45L	FBgn0026143	FBtr0070182	2	1	1	60	X	923240	923258	AAGGAGTTCTTCTCGATGG		58	923198	923217	AAACTATGTCCGCTATGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3703	FBgn0040348	FBtr0070187	3	1	1	232	X	837540	837558	TGGGAACTAGTACTAGCCT		58	836821	837344	AAATGGGAATTGAGTCCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3706	FBgn0040342	FBtr0070189	3	1	1	64	X	826120	826138	GAAGAGCTATGACGTGGTC		59	826074	826093	AGGTGACCATTAGTTTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13360	FBgn0025620	FBtr0070147	3	1	1	101	X	682698	682717	ATCACTGTGCTTAATCATGG		57	682552	682634	GAAATCCACGAATATGGCA		57	NA	
Drosophila melanogaster	50	sc	FBgn0004170	FBtr0070073	3	1	1	60	X	290483	290504	CCATATAATGTAGACCAATCCC		57	290525	290543	CACGATTTCGTTCTCTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3038	FBgn0040373	FBtr0070107,FBtr0070108	1	2	2	60	X	138968	138986	TATCTGGCTACGTACTGGA		59	138926	138944	ACGTACCACTTATTGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR41379	FBgn0085784	FBtr0114236	2	1	1	83	U	1397486	1397504	CTAGCGGAGTACATCTTCC		58	1397421	1397439	TCAATTATGACTCCCAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40948	FBgn0085541	FBtr0113954	3	1	1	60	U	8664880	8664898	CATATTCGCCTGAAATGGG		58	8664838	8664856	ATATGGTCAAGTGTCACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41564	FBgn0085695	FBtr0114144	3	1	1	78	U	5735662	5735680	TGAACTACTTCGTCAGCTC		59	5735722	5735740	TCTTGTCGAGCTAACTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40207	FBgn0058207	FBtr0113835	1	1	1	80	U	882428	884776	TCACAGCTAACTTGGTTCG		59	884818	884838	TTCCAAAGTCTAGACTCTGTG		59	NA	
Drosophila melanogaster	50	Asator	FBgn0039908	FBtr0089108,FBtr0089109,FBtr0089107	3	3	3	80	4	499216	499235	TTAACAAACTCCCAAGTAGC		57	498701	499175	CTTCGTATACTGTACATCCTC		57	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156	1	8	10	80	4	115558	115579	ACGAGATAACTATGGTTACGTG		59	115618	120041	ATATTATTGCCTCCCGAATCC		59	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-3405b	FBgn0082959	FBtr0113589	3	1	1	69	3R	24427618	24427636	ATAGCAATGTTCGATGTGC		58	24427668	24427687	CGATATAATATGGGCTGGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kek6	FBgn0039862	FBtr0085821	3	1	1	60	3R	27485652	27485673	GAGATCTTCAACAATGAAGAGG		58	27485691	27485712	AGCTAAAGGTGGTATTACTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PH4alphaNE2	FBgn0039783	FBtr0085685	1	1	1	80	3R	26336164	26336183	AAGGGTAACGATCATATGGG		58	26336044	26336122	TATCCACTTGCTCATAACCC		59	NA	
Drosophila melanogaster	50	Cnx99A	FBgn0015622	FBtr0110909,FBtr0085438,FBtr0085437	1	3	4	114	3R	25142527	25142547	CGATATTCTCTTCGACAACCT		59	25142079	25142451	GAATGAGTCCGATTCACGA		59	NA	
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0113466	3	1	9	81	3R	24728521	24745225	ACTATCTAACAGCAAAGCCC		59	24745268	24745287	CTGTGATGGAGAATGTCTCC		59	NA	
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0091524,FBtr0091526	1	2	9	124	3R	24746881	24746902	CATCTTGTTCGAACTGTATCTG		59	24746987	24747076	AAAGAGTATGATTGCGTGC		58	NA	
Drosophila melanogaster	50	CG12516	FBgn0039577	FBtr0085285	1	1	1	60	3R	24129599	24129617	AGTATATGGAATGAGCGGG		58	24129557	24129575	CGAGTAGATTCATCATGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4963	FBgn0039561	FBtr0085266	3	1	1	117	3R	23770106	23770284	CAGTCGAAAGATCTACCAC		57	23770007	23770025	CTTGAAGAACTCGTACGTC		57	NA	
Drosophila melanogaster	50	CG12879	FBgn0039540	FBtr0085218	2	1	1	60	3R	23520941	23520962	TTCTATTTCATACTGGACCAGG		59	23520983	23521001	CCCTAAGTTTGGAGCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	woc	FBgn0010328	FBtr0112857,FBtr0085178	1	2	2	81	3R	23083857	23083875	GTACTACGAGCGGTTTACC		59	23083730	23083813	GACAATGTATTGCGAATCGT		58	NA	
Drosophila melanogaster	50	TfIIA-L	FBgn0011289	FBtr0085155,FBtr0085156,FBtr0085154	2	3	3	92	3R	23081684	23081766	TACGATAAGATCACCAGGTC		58	23081821	23081839	TTTCTGGAACACGTAGTCC		59	NA	
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085140	2	1	12	142	3R	22892381	22893091	AATCACTTACAGAGGACGG		58	22892130	22892148	TCATTCCTCAAAGGACGAG		58	NA	
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100337	2	1	9	160	3R	22699713	22699731	TCAACCACCAGCATATACG		59	22699267	22699591	AGTTAGTTGTCCCAATCTAGC		59	NA	InUTR
Drosophila melanogaster	50	CG14243	FBgn0039444	FBtr0085035	3	1	1	72	3R	22466075	22466093	ATTGCACCTTTGGTAGAGG		59	22466129	22466147	CCTCATCGTACTGTTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ald	FBgn0000064	FBtr0084995,FBtr0084994,FBtr0084999	1	3	6	151	3R	22082687	22082705	AAGAAGGAGAACATTGCTG		57	22081053	22081071	AACCAAACGCCTTAGTAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14354	FBgn0039376	FBtr0084905	2	1	1	83	3R	21641985	21642004	CTATACCAACACGAGGAAGG		59	21642050	21642068	GATCTTCGGTCCCTTACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4774	FBgn0039360	FBtr0084931,FBtr0084929,FBtr0084930	3	3	3	81	3R	21512089	21512109	CGGATATGTTATAGTCCAGGG		59	21511697	21512046	TCCATCCAACAGATCTGTG		58	NA	
Drosophila melanogaster	50	jigr1	FBgn0039350	FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887	3	6	6	98	3R	21474749	21474768	GTACGATAGGTCAAACAAGC		58	21474829	21474919	CTTATACTGGTGGCATCGT		59	NA	
Drosophila melanogaster	50	CG6879	FBgn0039222	FBtr0084695	2	1	1	139	3R	20606644	20606665	CGAACGTTATAGTTCAAAGGTC		59	20606762	20606848	GGCTGACATTGTTATTGATCAC		59	NA	
Drosophila melanogaster	50	CG5728	FBgn0039182	FBtr0084632	1	1	1	81	3R	20156573	20156592	CTAACAGTTTCAGCAAAGCT		58	20156449	20156532	CATTTAAATAGCCTTCGACCAG		59	NA	
Drosophila melanogaster	50	CG13604	FBgn0039137	FBtr0113275,FBtr0113276,FBtr0113277,FBtr0084509	1	4	4	125	3R	19815591	19815609	ATTTGGATTATGAGCCGGT		59	19815424	19815503	TATTTCCAGTTGTCTGCTCC		59	NA	Nonspecific
Drosophila melanogaster	50	CG33111	FBgn0053111	FBtr0084529,FBtr0084530,FBtr0100312	1	3	3	120	3R	19633221	19633304	AATTCACAATCTCACCAGC		58	19633119	19633137	GATCTTGAAGAGCTTTCGC		58	NA	
Drosophila melanogaster	50	CG17379	FBgn0039076	FBtr0113274	3	1	1	92	3R	19231697	19231773	ACTTTGAGACTACCTCGAC		58	19231826	19231847	GTAGAGTTTGCAAACTAGTCTC		58	NA	
Drosophila melanogaster	50	CG4393	FBgn0039075	FBtr0084430	1	1	1	80	3R	19204906	19204925	GCAGGATTACTTCATCTGGA		59	19204779	19204865	CTCCTCAAAGACATTGTTCAC		59	NA	
Drosophila melanogaster	50	Irp-1A	FBgn0024958	FBtr0084327	2	1	1	80	3R	18548930	18548948	AGTATTTGAAGGCCACTCG		59	18548805	18548886	CCAAAGTTACAGACTCCGT		59	NA	
Drosophila melanogaster	50	wge	FBgn0051151	FBtr0110835,FBtr0084329,FBtr0084328	2	3	3	83	3R	18539680	18539700	TCAATCACATTGGATGGAGAG		59	18539554	18539635	TACCTCGAGGATCGTATCC		59	NA	
Drosophila melanogaster	50	CG33334	FBgn0053334	FBtr0084194	2	1	1	60	3R	17949905	17949925	ATGAGGAAGATGGAGATAGAC		58	17949946	17949965	TGAGCATTAGATATCTGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	E2f	FBgn0011766	FBtr0084118,FBtr0084119,FBtr0084117	2	3	3	202	3R	17449734	17449753	GAGATCAACGTCTTCCTCTG		59	17449364	17449569	GGCGTTTGAAATAATCCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	C15	FBgn0004863	FBtr0084111	1	1	1	180	3R	17328256	17328274	TATCCGCATCTCTATCCCT		58	17332879	17332897	GATTCTGGTAGGGATGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17838	FBgn0038826	FBtr0113255	2	1	8	151	3R	16623363	16623381	CTTAATGGCAAGGAGATCG		57	16623566	16624021	GTTTCAAATCCCACGATCC		58	NA	
Drosophila melanogaster	50	CG31200	FBgn0051200	FBtr0083929	2	1	1	80	3R	16570861	16570879	ATTGTACACCACCAACGAG		59	16570677	16570817	TACCGATTTCCCTGATCCT		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG4323	FBgn0038797	FBtr0083891,FBtr0083892	1	2	2	80	3R	16327409	16327428	AACGCTTGATGGATTATTGC		59	16327293	16327370	CCTTCGATAGATCTCCTAATCTG		59	NA	InUTR
Drosophila melanogaster	50	CG15685	FBgn0038789	FBtr0113253	1	1	1	84	3R	16165155	16165175	GATAAGCGGTATTTGTTCCTG		59	16165221	16165873	GATGGTGAGGGTAGAACTG		59	NA	
Drosophila melanogaster	50	CG34286	FBgn0085315	FBtr0112482	1	1	1	60	3R	15541501	15541522	CTTGTTGTAATCGTACTCATCC		58	15541462	15541481	GTTTCGGGTGAATAATTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17752	FBgn0038718	FBtr0083779	2	1	1	82	3R	15437837	15437855	ACTGTTGATCAGCTTCCTC		59	15437901	15437977	TTTGTGGTAGTTGCTTGTG		58	NA	
Drosophila melanogaster	50	CG7702	FBgn0038638	FBtr0083665,FBtr0083664	2	2	2	158	3R	14496999	14497017	GAAATTCAGTACGCCTGAG		58	14498586	14498604	GAATGTCCTCATGTTGGCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14304	FBgn0038629	FBtr0083639,FBtr0114497	1	2	2	80	3R	14419607	14419628	ATTACTGTGATCTCAATGGAGG		59	14419481	14419566	CGCAAGTTAAGGCAATCTG		59	NA	
Drosophila melanogaster	50	CG7675	FBgn0038610	FBtr0083582,FBtr0083583,FBtr0083581	3	3	3	130	3R	14205050	14205068	ACAGTCATTATCACAGGCG		59	14204680	14204956	ACGATCTCATCCTTCACTG		58	NA	
Drosophila melanogaster	50	Rpb4	FBgn0053520	FBtr0100273,FBtr0083604,FBtr0100275,FBtr0100274,FBtr0083603	2	5	5	84	3R	14079003	14079022	AAGGAGACCATAATGTCTGC		59	14078876	14078894	GACACAAATTACCCAGTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7175	FBgn0038584	FBtr0083609	3	1	1	76	3R	14047591	14047668	TGCTTTATCCCATCAAACG		58	14047533	14047551	CAACTGCAGATCTTCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7218	FBgn0038569	FBtr0083623	1	1	1	117	3R	13988748	13988840	CTGATCATGTTTCAGGCCA		59	13988649	13988667	ACTTCTTGAACACGGATCC		59	NA	
Drosophila melanogaster	50	CG7655	FBgn0038536	FBtr0083479	3	1	1	74	3R	13508806	13508825	TTTATAGCCTGACGTCATCG		59	13508921	13508939	ACAGAACAATCGACTGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5866	FBgn0038508	FBtr0083440	2	1	1	60	3R	13241764	13241782	GTCTGAATCGCATGATCCT		59	13241804	13241824	AGGATGTGAACCATGATAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pxd	FBgn0004577	FBtr0089287	2	1	1	82	3R	12852791	12852809	TTTGATTCCCTGACCAGAG		58	12852855	12852934	AGGAAGTGCTTGATCTGTC		59	NA	
Drosophila melanogaster	50	CG10349	FBgn0015350	FBtr0083364	2	1	1	184	3R	12705842	12705860	AGGAAGTCCCTACAGTCTG		59	12707239	12708167	GAGCCCGTATTTCTTTATATGC		59	NA	
Drosophila melanogaster	50	CSN5	FBgn0027053	FBtr0083292	3	1	1	142	3R	12296733	12296751	CGGTCAGATCATGGATCTC		59	12296915	12296934	GTATCAGTTCAATGGTGGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	ss	FBgn0003513	FBtr0083318	1	1	1	191	3R	12216469	12216487	AGCATTCTAAGGCTGTCTG		59	12205506	12209708	AAATCCATTTAGGGCCTGG		59	NA	
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204	1	6	8	163	3R	11782022	11785052	GACTGATGAGGAACAATGG		57	11785179	11785197	TTGATATTGTCGGTTCGTC		57	NA	
Drosophila melanogaster	50	CG3303	FBgn0038381	FBtr0083200	3	1	1	81	3R	11734592	11734613	ATACCTCTACAAGGTGAATCTC		58	11734652	11734819	CAATTCAAAGAGGTTTCTAGGG		58	NA	
Drosophila melanogaster	50	CG9590	FBgn0038360	FBtr0083172	3	1	1	61	3R	11612811	11612831	GGCTTAATCAAATCATCGGAG		59	11612854	11612872	TTCAGCCACATTAATGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	stumps	FBgn0020299	FBtr0112893,FBtr0082958	1	2	3	113	3R	10418460	10418478	GAATTCTTGCAACGAGACC		59	10418555	10418734	GATTTGCTACTTGTTGGCG		59	NA	
Drosophila melanogaster	50	CG31533	FBgn0051533	FBtr0082905	3	1	1	60	3R	9981277	9981296	GTAGAGATCCGAATATGTGC		57	9981236	9981254	CCAAATCGTTTCTGTTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rin	FBgn0015778	FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082796	3	4	5	61	3R	9476209	9476538	CAACAAGGGTGACTTTGAG		58	9476563	9476581	GCTGATTATCACCGAACTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	yellow-e3	FBgn0038150	FBtr0082759	2	1	1	60	3R	9229740	9229761	GAATATTTACAGTGAGCCTCAG		58	9229636	9229655	GTGTGAAAGTACAGAAAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	snk	FBgn0003450	FBtr0112833,FBtr0082716	2	2	2	83	3R	8866930	8866948	ACAATGTCCCTGTCATCTG		59	8866809	8866884	TGTACTCCTGACATTTGGTG		59	NA	
Drosophila melanogaster	50	CG6225	FBgn0038072	FBtr0082649,FBtr0113225	2	2	2	81	3R	8484654	8484732	ACTCCTGTGATTAAGTCATACG		59	8484773	8484792	TGCCCAGACTAATCTTTGAG		59	NA	
Drosophila melanogaster	50	CG18530	FBgn0042207	FBtr0082644	1	1	1	118	3R	8459886	8459968	ATCACTTGAACACAAGTGC		58	8460050	8460068	ATCGAATGGTCTGAACCTG		59	NA	Nonspecific
Drosophila melanogaster	50	Vha55	FBgn0005671	FBtr0082670	3	1	2	164	3R	8453369	8453387	CAGTACTGTTTCGTAGCTG		57	8451938	8453177	CAGTCTTGTAAGTCAAGCG		58	NA	InUTR
Drosophila melanogaster	50	CG34402	FBgn0085431	FBtr0112655,FBtr0112654	3	2	3	138	3R	8211982	8212000	CTTCACAGTCTCACATTGG		58	8212102	8212228	ATCTAGCCAGAAATGCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GstD6	FBgn0010042	FBtr0082573	2	1	1	60	3R	8203434	8203452	AGATGGTATAAGAACGCCC		58	8203475	8203494	GAATTCTTGCCAAGTTCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4066	FBgn0038011	FBtr0082566	1	1	1	60	3R	8137162	8137181	GACTTTGAGGATATTGACGA		57	8137203	8137222	TTGGAACATCAGTAACTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spt3	FBgn0037981	FBtr0082537	2	1	1	63	3R	7843125	7843143	CAAAGTGGAAGCATACCGA		59	7843168	7843188	CTACATTATGTCCAGCTAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12201	FBgn0037970	FBtr0082486	1	1	2	106	3R	7797743	7797816	ACCAGCATAACTCTATTGC		57	7797886	7797904	TAATCAGCACGATGTTCAC		57	NA	InUTR
Drosophila melanogaster	50	KP78a	FBgn0026064	FBtr0082407	2	1	1	60	3R	7175074	7175095	CCAACAGTGGATTTAACTACTC		58	7175035	7175054	TGGGTGTGGTGATATTAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14693	FBgn0037837	FBtr0082300	3	1	2	83	3R	6638919	6639201	CTCGATGACGATCAGATCG		59	6638854	6638875	ATCCTCACAGAATATGGTATCC		58	NA	
Drosophila melanogaster	50	CG12817	FBgn0037798	FBtr0082243,FBtr0110952,FBtr0110953	3	3	3	121	3R	6050095	6050114	GATGATTTGAGTGAGGAGGA		58	6049685	6049703	AATTGCCTTCACGAATTCC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	knk	FBgn0001321	FBtr0082194	2	1	1	83	3R	5948869	5948941	AGGATAACAGATGCAACGG		59	5948804	5948823	ATTCGTCAATCCCTGATAGC		59	NA	
Drosophila melanogaster	50	CG33784	FBgn0053784	FBtr0091785	3	1	1	101	3R	5894010	5894028	TTGCCGACTTAGTTTACGA		58	5894150	5894169	CATCATTCAGAACCATTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Fancl	FBgn0037781	FBtr0082203	2	1	1	60	3R	5878104	5878122	CCTTGTACAAGTCAAACGA		57	5878062	5878080	AAACGAATCATGGAACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3909	FBgn0027524	FBtr0082172	1	1	1	112	3R	5869713	5869788	TTAGCATTGCCTACAGTCC		59	5869864	5869882	GTGTCCTTCCAATGTTTGC		59	NA	
Drosophila melanogaster	50	eca	FBgn0069242	FBtr0082098	1	1	1	135	3R	5510535	5510553	CAGAACTACCAGCGATACC		59	5510418	5510436	TCTTGAGATGACGCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8301	FBgn0037717	FBtr0082073	2	1	1	98	3R	5410208	5410226	TTCATCCATCTGAAGACCC		58	5410288	5410951	ATAGGATGCAAAGACCTCC		58	NA	
Drosophila melanogaster	50	CG33936	FBgn0053936	FBtr0091943,FBtr0091942	3	2	4	146	3R	5180565	5180653	GTATGCTATAAGGACTCGC		57	5180763	5180781	TTGTAAACTGGTGACTGTG		57	NA	
Drosophila melanogaster	50	CG31454	FBgn0051454	FBtr0081870	1	1	1	129	3R	4348686	4348704	AGATCTTCAACAAGGGCTC		59	4348850	4348869	CCAGATTGAATGGCAAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11671	FBgn0037562	FBtr0081829	2	1	1	60	3R	4114154	4114172	CTAAATAACCGGCATGTGC		59	4114193	4114214	GATCAGTGATATAGGACTTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Os-C	FBgn0010401	FBtr0081781	1	1	1	130	3R	3804972	3804990	AGGTGAATACGGACAACAC		59	3805138	3805156	AAATTGCACAGATCTTGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Taf7	FBgn0024909	FBtr0114520,FBtr0081756	2	2	2	60	3R	3734791	3734810	ACACAGGTTATTGAAAGGGA		58	3734830	3734851	CTTAAGACTCCAGCATATTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31472	FBgn0051472	FBtr0081747,FBtr0081748	1	2	2	60	3R	3636796	3636814	CTTCTTCACGAACTACGGT		59	3636838	3636856	GGCTACATAGGGATTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14605	FBgn0037486	FBtr0081600,FBtr0081601	2	2	3	99	3R	3044372	3044393	CAACAGGACGATAATAAAGCTG		59	3044111	3044315	CCTTGTTAAAGAAATCAGCAGG		59	NA	
Drosophila melanogaster	50	CG15180	FBgn0037458	FBtr0081702	2	1	1	216	3R	2433920	2434066	ATTATATGAGGATGCTGGCC		59	2433723	2433741	AAAGCAACCTTGACAATGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Osi14	FBgn0040279	FBtr0078606	1	1	1	140	3R	2125767	2125785	GTACTGGTCGTCTAGTGGA		59	2125943	2125961	TCTTCTTGATCTTGCCACG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Osi1	FBgn0037406	FBtr0078588	2	1	1	108	3R	2000062	2000080	GAGAGTCATGGAGGAATCG		59	2000213	2000231	CAAAGTCATCTTCAGGTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	RpL13A	FBgn0037351	FBtr0078705	2	1	1	132	3R	1450614	1450632	CGTTGTTATTGATGGTCGC		59	1450728	1450746	GTTCCTGTAGAAGTGTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1427	FBgn0037347	FBtr0078702,FBtr0078703	2	2	2	83	3R	1427573	1427642	GTATAGCCTGCAAACTCGT		59	1427687	1427707	GTTGTGCCTCTAGTAAGTCTC		59	NA	
Drosophila melanogaster	50	Tim17a2	FBgn0037307	FBtr0078820	1	1	1	60	3R	1084453	1084471	GCTACGATTTATGCATCGG		58	1084411	1084429	GGTCAACAGTGATTAGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	UbcD6	FBgn0004436	FBtr0078849	2	1	1	89	3R	776249	776267	TGGTGGAATATGCTTGGAC		59	776116	776196	CTCAGCAGTGACTGTATGG		59	NA	
Drosophila melanogaster	50	CG34306	FBgn0085335	FBtr0112502	3	1	1	60	3R	753592	753611	TCACCCATCATTCAGTAGGA		59	753632	753652	AGTTTCTCTGACGAAGAAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nep2	FBgn0027570	FBtr0078891	3	1	1	81	3R	549287	549307	TTAGCATGGACTACATCATCG		59	549092	549246	GACTGGTCCAGATCTATAAGC		59	NA	
Drosophila melanogaster	50	CG14647	FBgn0037244	FBtr0078920	3	1	1	110	3R	227108	227128	CACCAATCTTAACTACTGCTG		58	227200	227333	TTTGCACCTTCCATATTGG		57	NA	
Drosophila melanogaster	50	CG9795	FBgn0037234	FBtr0078907,FBtr0078906,FBtr0078905	3	3	4	100	3R	151096	151114	ATCAATCCGGGAATTCCAC		59	151177	151431	CAATTTCTCAAGGGTACGGA		59	NA	
Drosophila melanogaster	50	CG9766	FBgn0037229	FBtr0078980,FBtr0113191,FBtr0078979	1	3	3	184	3R	95720	95738	ATTCTGCTGAACAAGAAGG		57	95495	95572	CTAGCGTTCATAACCACTG		57	NA	
Drosophila melanogaster	50	Eip63F-2	FBgn0004911	FBtr0073162	2	1	1	60	3L	3935239	3935260	GCAACTTAAGTTAGTTATCGGC		59	3935281	3935299	TTAAGACCCGGTTAAGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11133	FBgn0037205	FBtr0078559	3	1	1	60	3L	22896931	22896951	GATTTGACAGTGAAACTCCAG		59	22896971	22896991	CACAGTTCGTAGAGAAGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11248	FBgn0037117	FBtr0078430,FBtr0078431	2	2	2	146	3L	21675714	21675788	CTACAAGAAGCTCGTTCAG		57	21675898	21675916	TTCATATCAGACTGGCAGG		58	NA	
Drosophila melanogaster	50	CG7611	FBgn0037094	FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362	1	8	8	84	3L	21519967	21519985	TAAACAGCATAGCCTTTCG		57	21520031	21520298	CTATCAAAGTTGTACCCTCTG		57	NA	
Drosophila melanogaster	50	CG7611	FBgn0037094	FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362	1	8	8	84	3L	21519967	21519985	TAAACAGCATAGCCTTTCG		57	21520031	21520298	CTATCAAAGTTGTACCCTCTG		57	NA	
Drosophila melanogaster	50	Eip78C	FBgn0004865	FBtr0078308,FBtr0078307,FBtr0078306	1	3	3	92	3L	21257078	21257157	ACTCTACGATTCTGACTTTGTC		59	21257210	21257228	GAGAAGAGTCCGATTTCGG		59	NA	
Drosophila melanogaster	50	CG5618	FBgn0036975	FBtr0078179	1	1	2	130	3L	20347970	20347989	AGGTGATCCATTACTCTGTG		58	20348082	20348417	TTCGTAGGTGTATGTGCTG		59	NA	
Drosophila melanogaster	50	CG8533	FBgn0036907	FBtr0074877,FBtr0114601,FBtr0074878,FBtr0074876	1	4	4	169	3L	19794992	19795010	CATCTTCGACTACAAGCCT		59	19795205	19795274	ATGGTTCAGATGTGTCCAC		59	NA	
Drosophila melanogaster	50	CG6852	FBgn0036820	FBtr0075063	1	1	2	96	3L	18862842	18862860	AGAACTCGATGGAAATCCC		59	18862985	18863003	TTTGCCATCGATAAAGACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14353	FBgn0036771	FBtr0075144	1	1	1	60	3L	17901434	17901452	GGCCAAGTTTGTGATTCTG		59	17901474	17901494	TTCGTAGATGTCCATGATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5535	FBgn0036764	FBtr0075158,FBtr0075159	3	2	2	256	3L	17847364	17847452	GAATACGCAATTGGCTCTG		59	17847126	17847145	ATAATGACGAACAACACGAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Msi	FBgn0043025	FBtr0110847,FBtr0110846	1	2	3	93	3L	17749107	17749128	CTGGAGTGAATTTATCTTCACC		58	17748907	17749053	ATCGTACATATTTGGCAGC		57	NA	
Drosophila melanogaster	50	CG7460	FBgn0036749	FBtr0075187	2	1	1	60	3L	17734164	17734182	ATACGACAAGGTCAAGGAC		58	17734206	17734224	AAAGGTTTCATAGTGCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr73D	FBgn0036680	FBtr0113176	1	1	1	141	3L	16933672	16933744	GGATAAGAGGTCTGTACTCCT		59	16933551	16933569	TACAGAGGACTGGAGTACG		59	NA	
Drosophila melanogaster	50	CG13032	FBgn0036652	FBtr0075316	1	1	1	100	3L	16669018	16669036	CAAATACGCTGAATTCGGC		59	16669158	16669176	CTTCTCTGTCAGCATTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33688	FBgn0053688	FBtr0091668	2	1	1	96	3L	16192716	16192734	CTTAAAGGATCCACGACAG		57	16192794	16192873	GACAACGTCCTTATATGGG		57	NA	
Drosophila melanogaster	50	Pgm	FBgn0003076	FBtr0075492	3	1	1	127	3L	16119538	16119556	CAGATCCTGTCGACAAGTC		59	16119363	16119447	ATCAATGTACAAGCGAACG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG6876	FBgn0036487	FBtr0075642	1	1	1	238	3L	15153332	15153350	CTGTCATGAGAGTGTCCAC		59	15153552	15153629	CATCCTCTTCGATGTCTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Pdi	FBgn0014002	FBtr0075650,FBtr0075648	3	2	2	72	3L	15131510	15131531	CAATGAGGATATTGTCATTGCC		59	15131459	15131478	GAAGGACGAGATCTTAATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9238	FBgn0036428	FBtr0075724,FBtr0075723	1	2	2	66	3L	14540227	14540245	AAGGATAGTGACAGCAACG		59	14536002	14536020	CATCATCAGCGAAGATCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17361	FBgn0036395	FBtr0075767	2	1	1	60	3L	13990384	13990402	GAATTGGTGAAGATGTGCC		59	13990426	13990444	CGTAGATGTCTAGCAGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10732	FBgn0036365	FBtr0075851	3	1	2	99	3L	13441475	13441551	GAACGAAGAGCAAATCCTC		58	13441614	13441632	GATTAGTTCGTGATCCGGT		59	NA	
Drosophila melanogaster	50	CG10191	FBgn0036354	FBtr0075863	2	1	1	79	3L	13381865	13381884	TTAGTATCCGCATTGATCCG		59	13381805	13381823	ATGTTTACTGTCGAGCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11529	FBgn0036264	FBtr0076005	3	1	1	60	3L	12191796	12191815	CAAGTACATCAGCAGTACCT		59	12191837	12191856	TATCACTGTACTGATGGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5642	FBgn0036258	FBtr0076022	2	1	1	162	3L	12136976	12136995	CAAACTGGCATCTTTCATCG		59	12136774	12136851	GTAGAAGTCCAACTCGGAG		59	NA	
Drosophila melanogaster	50	CG17152	FBgn0036250	FBtr0076026	3	1	1	60	3L	12119339	12119357	ATGAGAACGTTCCTCATGG		59	12119297	12119315	CAAAGTAGATGGTGGACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14128	FBgn0036218	FBtr0076036	2	1	1	60	3L	11873495	11873514	CATACAAAGAACCACTACCC		57	11873536	11873555	TTACAAGTTAGTCCTTCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7368	FBgn0036179	FBtr0110884	1	1	1	182	3L	11596183	11596201	CAATATGCAACTGTTGCGT		59	11596347	11596449	ATTCTGGAGTACTTGCTGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG14141	FBgn0036146	FBtr0076164	2	1	1	60	3L	11194892	11194911	CATATCACCTGGTACAAGGA		58	11194934	11194952	CGTGTACGTGCATATAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mocs1	FBgn0036122	FBtr0076206,FBtr0076205,FBtr0076204	3	3	3	110	3L	11064200	11064218	TTTCTCTAACCGAACGCTG		59	11064720	11064739	CTAGACGAAGGATTTCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8065	FBgn0036075	FBtr0076296	3	1	1	69	3L	10209611	10209631	AACTTCCATCTATATCGGAGC		59	10210144	10210162	ATTTCATCAGATCGGAACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Or67a	FBgn0036009	FBtr0076375	2	1	1	80	3L	9524084	9524163	GAGGTTAATAGATGCTAGCG		57	9524206	9524224	TTCTTGAATCGTTTGTCGG		58	NA	
Drosophila melanogaster	50	CG4022	FBgn0035986	FBtr0076486	2	1	1	155	3L	9402484	9402502	ATTGTCTTTGCCGTAATGG		58	9402276	9402365	GAGTATTACGGCGTTTCTG		58	NA	
Drosophila melanogaster	50	CG5288	FBgn0035950	FBtr0076553,FBtr0076555,FBtr0076554	2	3	3	81	3L	8977959	8977978	GCTTCAACTCAGAAATCTCG		58	8977752	8977915	CTTTGGAAGCTCGATTCTG		58	NA	
Drosophila melanogaster	50	pix	FBgn0086706	FBtr0076558,FBtr0076557	2	2	2	82	3L	8966608	8966629	CTCGTATTTGGATGTTAAGCAG		59	8966488	8966568	CCACAATAATAAACTTGGTGGG		59	NA	
Drosophila melanogaster	50	CG6745	FBgn0035901	FBtr0076620	2	1	1	88	3L	8504065	8504083	GGATTACGTGACCTTCCTG		59	8504135	8504212	ATGGTCGTAAGTTCAGTCG		59	NA	
Drosophila melanogaster	50	Gug	FBgn0010825	FBtr0076616,FBtr0076619,FBtr0076617,FBtr0076618	3	4	4	80	3L	8463572	8463862	TCAGTACTTTAGACAACGGC		59	8463903	8463923	CCGAGTATTGTCTTTGTTCAG		58	NA	InUTR
Drosophila melanogaster	50	CG13678	FBgn0035859	FBtr0076700	1	1	1	97	3L	8215942	8215960	ATCCATGGATTGTAAACCC		57	8216020	8216039	TTAATGCATCACAAGTAGGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG8038	FBgn0035831	FBtr0076763	3	1	1	63	3L	7971158	7971176	TGGAGTTCACCATATTCGG		59	7971113	7971131	ATCTTCTTAACGCTTCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780	1	8	8	125	3L	7811265	7811285	GATGACAAATACAAGGAGGAG		58	7810754	7811178	GTCGGCATATTGTGTTACC		58	NA	
Drosophila melanogaster	50	CG8607	FBgn0035760	FBtr0076837	1	1	1	60	3L	7313438	7313459	GCGAATCTGTATAAGAAACACC		59	7313543	7313561	GAATGTCGTGCATGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32389	FBgn0052389	FBtr0076921	2	1	1	60	3L	7155903	7155922	AGAAACAGTTCCATAAGCAG		57	7155862	7155883	CTACTATGCTGGGAATTATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14820	FBgn0035718	FBtr0076894	2	1	1	101	3L	6927067	6927178	CTGTGGATGTTGACTGGAG		59	6927242	6927261	TATGTAGGCGGTTAGTTGAC		59	NA	
Drosophila melanogaster	50	CG10226	FBgn0035695	FBtr0077012	3	1	1	97	3L	6231474	6231494	TCTCCTTTATCTACGGATGGA		59	6231114	6231415	TTTACCTTGGTAATGGGCC		59	NA	
Drosophila melanogaster	50	CG10625	FBgn0035612	FBtr0113145,FBtr0113144,FBtr0077140,FBtr0077139,FBtr0077137,FBtr0113146,FBtr0077138	1	7	7	60	3L	5538130	5538149	AGAACCGTCGTCTAATTCTC		59	5538089	5538107	GAATAGTACTGACGGTTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lkr	FBgn0035610	FBtr0077149	2	1	1	80	3L	5508765	5508852	ATTTCGCGAGAACAATGAG		58	5508703	5508722	GATTGCAATTGATCATCGGA		58	NA	
Drosophila melanogaster	50	CG34047	FBgn0054047	FBtr0100102	3	1	1	62	3L	5099394	5099412	CTGTATATTGTTGCACCCG		58	5099350	5099368	AACATTGGTGCAAGATGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11347	FBgn0035542	FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141	3	6	6	227	3L	4419446	4419464	GTATTAGGTCCACCCAGGA		59	4419654	4419749	TGTTCTTGCTCTTCTGACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Gr64c	FBgn0045477	FBtr0073196	1	1	1	80	3L	4031427	4031503	ATAGCTTTCAATCCAAGGG		57	4031547	4031565	TTAGTACGCGAATGATGAC		57	NA	
Drosophila melanogaster	50	CG16758	FBgn0035348	FBtr0072963	3	1	4	144	3L	2503188	2503206	ATGGAACCAATGGACACAG		59	2500454	2501079	TAGGGATACGTGTCTTCGT		59	NA	
Drosophila melanogaster	50	CG7852	FBgn0035229	FBtr0072735,FBtr0072737,FBtr0072736	1	3	3	81	3L	1539065	1539083	AGCATCACGCTGATATGTC		59	1539125	1539209	GTCGAGGAAGACATCTATACAG		59	NA	
Drosophila melanogaster	50	Glut1	FBgn0025593	FBtr0112911,FBtr0072617,FBtr0072616,FBtr0112909	3	4	6	80	3L	982228	982246	CCTGCATCTCTATGGTCTG		59	982288	983865	TCGATCATTTCCTTGATCAGG		59	NA	
Drosophila melanogaster	50	trh	FBgn0003749	FBtr0112839,FBtr0072567,FBtr0110875	2	3	3	80	3L	369358	369379	GTTAACAAGAGCTTGTACTCAC		59	369140	369317	CTTCTCGATCAGGTCTGAG		58	NA	
Drosophila melanogaster	50	E(bx)	FBgn0000541	FBtr0072522,FBtr0072521	1	2	3	87	3L	234500	234582	TTAAAGAGCCAATGGATCTC		57	234432	234453	GTCATATCGCCTATAAACTCAG		58	NA	
Drosophila melanogaster	50	Mtch	FBgn0027786	FBtr0072477,FBtr0072479	1	2	3	83	3L	185060	185138	ACATCTTTCAGTACGCTGG		59	185185	185203	AACCCACCAATTTAGGAGC		59	NA	
Drosophila melanogaster	50	CR30009	FBgn0050009	FBtr0088361	2	1	1	73	2R	6151291	6151309	ATTGAGTTACGATCTCGGT		58	6151236	6151254	TTGAACTTTAAGCAACGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13585	FBgn0035020	FBtr0072303,FBtr0072304	2	2	2	99	2R	20420152	20420423	ACGAGTGTTACGATGTCAC		59	20420486	20420504	ACGATCAGGAAGATCATGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Pde8	FBgn0034886	FBtr0072075	2	1	5	181	2R	19563344	19563362	CAGATGGACTTCATAGCCA		58	19563505	19564584	GCCGAACAATTCTCTTTAGTG		59	NA	
Drosophila melanogaster	50	Dcp-1	FBgn0010501	FBtr0072062	1	1	1	138	2R	19440362	19440380	CTCTTCTCCTACTCGACCA		59	19440542	19440560	TAACGAATGTAAGCAGGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13541	FBgn0034841	FBtr0072001	2	1	1	60	2R	19172180	19172201	CAGAAGAACCCTTATTCAAACC		59	19172220	19172240	TGTATCTTCGTCATCATCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13539	FBgn0034833	FBtr0071998	2	1	1	60	2R	19072377	19072396	GATACGAAGAAGCGTTATGG		58	19072416	19072437	GGAAATCCAAGACTATCAAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30193	FBgn0050193	FBtr0071948,FBtr0113364,FBtr0071945,FBtr0071949,FBtr0071946,FBtr0071947,FBtr0071944	2	7	7	60	2R	18816760	18816778	CACAGAGACGATCTACGAG		58	18816802	18816820	GCTAACCTCTCGAATAACC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30190	FBgn0050190	FBtr0113362,FBtr0113363	2	2	3	121	2R	18817732	18817750	CAGGATGACATCAGCTCTG		59	18817835	18819048	ATGGATTTGTCCTCATTGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	mRpS29	FBgn0034727	FBtr0071842	2	1	1	60	2R	18306707	18306725	ACACTGGATCAACAAGACG		59	18306665	18306685	CTTGTTGCTCATGAACTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dve	FBgn0020307	FBtr0071775	2	1	2	223	2R	18150945	18168186	AATCCCAAATCACTTCCAC		57	18168373	18168504	ATTAATGAGCCTCTGGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	synj	FBgn0034691	FBtr0071757,FBtr0071756	1	2	2	102	2R	17970123	17970141	TACTGGACAACTCAAAGCA		58	17970274	17970292	ATATTGGAGGGCAGTAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30289	FBgn0050289	FBtr0071697	3	1	1	101	2R	17408612	17408690	GTACTCAGATTATGTTAGGCC		57	17408531	17408550	TGACCATATTCTGTTTCACC		57	NA	
Drosophila melanogaster	50	CG9822	FBgn0034623	FBtr0071612	2	1	1	165	2R	17234803	17234821	AGAGCACAAACTCATCGAC		59	17234587	17234607	ATTGTAGATGTAGAGGAAGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Treh	FBgn0003748	FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536	3	6	6	81	2R	16972827	16972845	TTTAATGCCATGATGGAGG		57	16972889	16972968	GTGCACTGAAGTACTTATCG		58	NA	
Drosophila melanogaster	50	Obp56f	FBgn0043533	FBtr0086328	3	1	1	69	2R	15601279	15601297	ATTCCATCAAGGCTTCAGG		59	15601329	15601348	TTGGTAATGGACTGATAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fak56D	FBgn0020440	FBtr0086542,FBtr0086543,FBtr0114605,FBtr0086544	2	4	5	83	2R	15322745	15322827	GGTATTAATACCGCTGAGAG		57	15322681	15322699	CCAAATCGTGAACTCTAGG		57	NA	
Drosophila melanogaster	50	CG15072	FBgn0034376	FBtr0113095,FBtr0113094,FBtr0086604	1	3	3	80	2R	14588756	14588831	GAGCTGCAAAGCTATATGC		59	14588874	14588893	ATGTGCTACGGATAGATCCT		59	NA	
Drosophila melanogaster	50	CG30116	FBgn0028496	FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718	3	4	4	80	2R	14363164	14363625	GGATTATCGCCTTATGAACG		58	14363103	14363121	GATTGAAAGGCTTGTTCCA		58	NA	
Drosophila melanogaster	50	Gbp	FBgn0013969	FBtr0086723	2	1	1	73	2R	14336993	14337011	GGAACCTATCTGGCTATCG		59	14335078	14335096	AATACCTTCAGTTCCTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dp1	FBgn0027835	FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682	1	6	6	83	2R	14304949	14304967	CATCTCCTCGATCATGGAG		59	14305013	14305092	CGAATAGTGACCTTATCGCT		59	NA	
Drosophila melanogaster	50	MED9	FBgn0034311	FBtr0086747	1	1	2	105	2R	14054995	14055014	GATTCTGCCGATAATCTACG		58	14055216	14055286	TTCAAAGATCTTGTGGTTGC		58	NA	
Drosophila melanogaster	50	CG10936	FBgn0034253	FBtr0086894,FBtr0086895	1	2	2	81	2R	13494101	13494119	ACCAGAGCTACTTGATCAC		58	13493968	13494058	GGAATAAACTTCGTTGAGCTG		59	NA	
Drosophila melanogaster	50	Rab4	FBgn0016701	FBtr0086830,FBtr0086831,FBtr0086829	1	3	3	82	2R	13461765	13461847	AGAGAACGAGCTTATCTTCC		58	13461892	13461910	TGGTCTTTGAGCACTTGAG		59	NA	
Drosophila melanogaster	50	CG10956	FBgn0034195	FBtr0110777	1	1	1	60	2R	13010825	13010844	ATATTTAAGCCCAGCAAGTC		57	13010784	13010804	CAATCCGAAAGTTGGTATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9002	FBgn0050462	FBtr0100120	2	1	2	205	2R	12884668	12884686	AGAAACTGGATGTGAAGGC		59	12884218	12884499	GATCGTGTTGTAGCATCCA		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG5065	FBgn0034145	FBtr0087108	3	1	1	82	2R	12509108	12509190	AAGATCAGAACCTACTGTGTC		59	12509234	12509252	CAGTTTGAGCTTCTCATCG		58	NA	
Drosophila melanogaster	50	CG4945	FBgn0034137	FBtr0087100,FBtr0087099,FBtr0087098	1	3	3	131	2R	12454486	12455297	GAATTGGAGAAGATCCAGCT		59	12455391	12455409	TTTGGGTACAGCTTTCAGG		59	NA	
Drosophila melanogaster	50	CG33550	FBgn0053550	FBtr0091520	2	1	1	86	2R	12354631	12354649	TTTGGTACACAGATTGGTC		57	12354699	12354773	TAAGGAATAGTGTACCGGG		57	NA	
Drosophila melanogaster	50	JhI-26	FBgn0028424	FBtr0087139	2	1	1	71	2R	12178209	12178228	TAATAGCTATAGGGAGCACG		58	12178438	12178456	TACTCCTTCAGAAGCTCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10731	FBgn0034081	FBtr0100497	1	1	1	101	2R	12034740	12034758	TTCCTGCTGATTCAGAAGC		59	12034593	12034675	TGGAAAGGTGGATAAGTGC		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG8397	FBgn0034066	FBtr0087261	3	1	1	154	2R	11904152	11904170	GTCGAGATCAATCCCAAGG		59	11903951	11904034	AAGAAGTCGGTGATCTTCC		58	NA	
Drosophila melanogaster	50	CG8291	FBgn0034049	FBtr0087298,FBtr0087299,FBtr0087300	2	3	3	89	2R	11812694	11812776	GGATACAGAACATCTTTGCTG		59	11812625	11812643	TAAGAAACGTTTCCTGCGT		59	NA	
Drosophila melanogaster	50	CG8102	FBgn0034007	FBtr0087393,FBtr0087394	3	2	2	60	2R	11184882	11184901	CCAAACTTTACTGTCTCAGC		58	11184841	11184859	GACATCTCTTCCTCCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12424	FBgn0033987	FBtr0087409,FBtr0087410,FBtr0087411	1	3	3	101	2R	10865415	10865739	TGGTGCTCATTAAGGTTCG		59	10865804	10865822	TGTAATGGCTGAAGGTCAG		59	NA	Nonspecific
Drosophila melanogaster	50	Ciao1	FBgn0033972	FBtr0087460	3	1	1	82	2R	10741542	10741560	ACGATCAGGACGTAAACTC		59	10741478	10741496	TTTAATGGTGCCATCATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arc1	FBgn0033926	FBtr0087560	2	1	1	74	2R	10247479	10247500	AGACATACAAGGATGTAGAAGG		59	10247426	10247444	CCATACCGTAGAACAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13349	FBgn0033886	FBtr0087611,FBtr0114495,FBtr0114494,FBtr0087610,FBtr0114493	2	5	5	80	2R	9847383	9847401	GACGATCTCATCGTCTTCC		59	9847321	9847339	CTTAAGCACATAGACACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13344	FBgn0033884	FBtr0087586	2	1	1	244	2R	9749705	9749723	CCTAATGGACGATGTTTGC		58	9749993	9750011	TTGACTCCTTGATCTTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6145	FBgn0033853	FBtr0087687,FBtr0087685,FBtr0087686	3	3	3	60	2R	9426355	9426491	GCTAGTGACCTTTAAAGATGG		58	9426315	9426334	GCAGACGATAAAGTCAATCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13331	FBgn0033850	FBtr0087672,FBtr0087673	1	2	2	96	2R	9409561	9409579	CTTCATCCTCGACTACGAG		58	9409834	9409852	AATCTCGTAGGATTCCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33528	FBgn0053528	FBtr0091491,FBtr0091493	2	2	3	87	2R	9406102	9406120	GGAATTGCCATACTCTGCT		59	9405635	9406054	AGATCAAAGACTTCTTCTCGTC		59	NA	
Drosophila melanogaster	50	CG17041	FBgn0033822	FBtr0087749,FBtr0087751,FBtr0113080,FBtr0087750	2	4	4	222	2R	9151041	9151059	GATAATGTGGCAAGACCCT		59	9151379	9151397	GTTCTCAATGGTGTTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4646	FBgn0033810	FBtr0087764	1	1	1	60	2R	9107604	9107623	TTCTTCTTGAAGCTGAAGTG		58	9107563	9107581	TGATATCGTGCCACTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AQP	FBgn0033807	FBtr0087766	1	1	1	293	2R	9100790	9100808	CTTCAAGGAGATGGCTCTG		59	9100455	9100533	TTAAAGGCGTAAACTGCCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	Drl-2	FBgn0033791	FBtr0087795,FBtr0087794	1	2	2	83	2R	8945719	8945833	CCCAGATGAATTCTTTACGG		58	8945655	8945673	TACGATAGCAACTGTGAGG		58	NA	
Drosophila melanogaster	50	CG33798	FBgn0053798	FBtr0091802	1	1	1	80	2R	8881824	8881844	CCGTTACTAAGTTCATCTTCG		58	8881883	8881975	TAATTATGTCATGGTCGTAGGG		59	NA	
Drosophila melanogaster	50	CG8831	FBgn0033737	FBtr0087952	2	1	1	60	2R	8317044	8317065	TCTTAACTTCTGCAGAGAACTC		59	8316949	8316968	CGTTTGAATCACTTGTTGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	garz	FBgn0033714	FBtr0087898,FBtr0087897	2	2	2	81	2R	8216834	8216852	AATTTGCGTGGTCTAAACG		59	8216896	8216979	TCTCTTCGTTCTTGATTGCA		59	NA	
Drosophila melanogaster	50	CG18343	FBgn0033683	FBtr0087982	1	1	1	71	2R	8026466	8026484	CCATGTACTCTGTTCTGGG		59	8026519	8026537	AAAGTATTGCGTAGCACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rep1	FBgn0024732	FBtr0087978	3	1	1	260	2R	7935685	7935986	CATTGGATCGATCCCACTC		59	7936210	7936228	CATAAACTCCTTTCCCGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	MCPH1	FBgn0033664	FBtr0088055,FBtr0088056	2	2	2	82	2R	7785976	7786066	CAAACTACTCAACAGGATAAGC		59	7785915	7785933	TACCATTGGTTCCCATCAG		58	NA	
Drosophila melanogaster	50	nompA	FBgn0016047	FBtr0089382,FBtr0089381,FBtr0089379,FBtr0089380	2	4	4	81	2R	7203664	7203682	GCAGAAGGATGACATTAGC		58	7203432	7203619	GTTGGCTCGTTGATTATCG		58	NA	
Drosophila melanogaster	50	CG13210	FBgn0033612	FBtr0088174	1	1	1	60	2R	7182955	7182974	CTAACGAGTCGTATAACCCT		58	7182914	7182932	TTAAGCAGAAACCCAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS15Ab	FBgn0033555	FBtr0088226	2	1	1	119	2R	6709609	6709627	CAGTTTGGTTACGTTGTGC		59	6709710	6709728	GATGTGAACTTGGTGTCTC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	stan	FBgn0024836	FBtr0088214	3	1	1	117	2R	6604799	6604817	CACCCTAAATGGAGGATCC		59	6604898	6607314	AATATTCCGCTCGGTATCC		58	NA	
Drosophila melanogaster	50	CG12920	FBgn0033481	FBtr0088404	1	1	1	120	2R	5957468	5957487	GAAAGTGGTGATCGTATCCT		59	5957570	5957649	AGAGAAAGACGAAGGAGGA		59	NA	
Drosophila melanogaster	50	TER94	FBgn0024923	FBtr0112905,FBtr0088391,FBtr0112906,FBtr0088392	1	4	4	102	2R	5880410	5880494	GACAGAACTTCAGATTCCC		57	5880560	5880578	CTGTAAAGATCATCGTCGC		58	NA	
Drosophila melanogaster	50	cbx	FBgn0011241	FBtr0088453,FBtr0088452	3	2	2	148	2R	5752729	5752809	ATGCTAACTCCTTGCAGTG		59	5752545	5752563	ATGAATCACATCCTGCTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12929	FBgn0033429	FBtr0088541	3	1	2	149	2R	5473877	5473895	GAGGGCCAGTATTACAGTG		59	5473688	5473706	ATCATCAGGATACTGCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1888	FBgn0033421	FBtr0088547	1	1	1	60	2R	5433057	5433075	AACAGCTCAGCTATTACCG		59	5433015	5433033	ATGTTGGTGAATCTCACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2127	FBgn0033286	FBtr0088765	1	1	2	84	2R	4257390	4257408	TCAGAAATGTCGTTCCCTC		59	4257324	4257343	CCAATCGACCTTGAATAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rs1	FBgn0021995	FBtr0088788	3	1	1	114	2R	4053428	4053632	TCCATTGAGGTTCTCATTCTG		59	4053708	4053726	AGAACAACATGGTCTGACG		59	NA	
Drosophila melanogaster	50	CG14762	FBgn0033250	FBtr0088867	2	1	1	113	2R	3899227	3899245	TGCCAATGTGTTTAGTCAC		58	3899071	3899151	AGATATTGCAGGTTCTCCTC		58	NA	
Drosophila melanogaster	50	CG30497	FBgn0050497	FBtr0088932	2	1	3	93	2R	3629422	3665994	TATCCCATAATGCAGTGCG		59	3629347	3629365	CATCGTCGATCTGGTAGAC		59	NA	
Drosophila melanogaster	50	didum	FBgn0015933	FBtr0089745,FBtr0089744,FBtr0089743	3	3	3	121	2R	3389124	3389142	CTACTGGAGAAGTCACGTG		59	3389226	3389310	AATTTGTCCTGGTGATCCAG		59	NA	
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012	2	6	7	107	2R	3293620	3293715	CAAATATGACTTCAAGCCAGC		59	3287508	3293552	CCGGAACTTTCAGAATTTGG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111075	1	1	60	80	2R	3250881	3250901	GGATCACATAGACATAACCGA		59	3249357	3250839	ACCAGGTACTTTCCATCAG		58	NA	
Drosophila melanogaster	50	esn	FBgn0028642	FBtr0089039,FBtr0089038	2	2	2	160	2R	3012689	3012927	GCGATGAGATCATCTTCTC		57	3013051	3013069	GAACATTGTGTCGAAGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Cyp6u1	FBgn0033121	FBtr0086185	2	1	1	122	2R	2860228	2860304	AAGTCCTCAATGAAACGCT		59	2860124	2860142	GTATCAGCACATTGTTGCC		59	NA	
Drosophila melanogaster	50	CheB42b	FBgn0066293	FBtr0086192	1	1	1	100	2R	2831080	2831099	CGACAAGAACCAGTATTGGT		59	2830839	2831017	GTACCAGAACGGTATCAGG		59	NA	
Drosophila melanogaster	50	CG33919	FBgn0053919	FBtr0091923	2	1	1	130	2R	2511757	2511831	ACCCAATTATCCGAATGCA		59	2511645	2511663	CATTATCACGCCATACGGT		59	NA	
Drosophila melanogaster	50	dream	FBgn0033051	FBtr0086028	1	1	1	60	2R	1908911	1908988	AAATGCAATCCAAAGACCG		59	1908869	1908889	ACGTACTTAGAGGTAAGAGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Ogt	FBgn0040295	FBtr0086085,FBtr0086084,FBtr0086086	3	3	3	81	2R	1208107	1213316	CGAATATTTGATAGAGCTGTGG		59	1213356	1213376	CCAAATTGCCATGAACTACAG		59	NA	
Drosophila melanogaster	50	CG33492	FBgn0040849	FBtr0089605	1	1	1	124	2R	908331	908349	AATTCCTAGCATGGACGAG		59	908435	908679	CAAAGTGACTTACCTCATCAG		58	NA	
Drosophila melanogaster	50	CR33315	FBgn0053315	FBtr0081172	1	1	1	74	2L	19075210	19075228	GAGCAGCAATCAATATCGA		57	19075154	19075172	CAGATCCAGACTGGATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6675	FBgn0032973	FBtr0085936	1	1	1	60	2L	22109789	22109807	ATAGAGACCTTTGGAGCTG		58	22109831	22109849	CTCCAAACTGACGATTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His3:CG33815	FBgn0053815	FBtr0091819	1	1	1	60	2L	21454758	21454776	TCGAAGATACCAACTTGTG		57	21454800	21454818	ATGTCTTTGGGCATTATGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acon	FBgn0010100	FBtr0081473,FBtr0112855	2	2	2	118	2L	21172390	21172469	TACGATAAGATCCAGCCCA		59	21172550	21172569	TTAAGCTTGATCCTCTCGAC		59	NA	
Drosophila melanogaster	50	Mtp	FBgn0032904	FBtr0081439	1	1	1	263	2L	20919614	20919699	GAAATCCAGCAGAACACTG		58	20919311	20919329	TTTGTGGGAGAGTGTAGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Fs(2)Ket	FBgn0000986	FBtr0081392	1	1	1	80	2L	20737376	20737394	TTCGACTGATGTACGACTC		58	20737435	20737524	CGGGAATTATATCGCAAATACG		59	NA	
Drosophila melanogaster	50	Taf13	FBgn0032847	FBtr0081340	1	1	1	82	2L	20093243	20093332	AGATCAAGTATGTGGGCAC		59	20093179	20093197	GGTTTGGCTTATACCTGGA		58	NA	InUTR
Drosophila melanogaster	50	vls	FBgn0003978	FBtr0081347	3	1	1	96	2L	20064569	20064640	AGTTATTAATCAATGGGCCC		57	20064492	20064510	GTGTAGATGAACTCATGGC		57	NA	
Drosophila melanogaster	50	CG10263	FBgn0032812	FBtr0081264,FBtr0081263	2	2	3	159	2L	19581472	19581490	ATCAATCACAGACATGTGG		57	19581331	19581349	TTTAGGAGCCATAGCTACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ref(2)P	FBgn0003231	FBtr0081253,FBtr0100289	3	2	2	115	2L	19544997	19545015	ATACGGTGAGTACATCGAC		58	19545094	19545167	GATGCTTTCATCAGTGTGG		58	NA	
Drosophila melanogaster	50	CG10623	FBgn0032727	FBtr0081190	1	1	1	60	2L	18956842	18956862	GGAGCGGATATTATTCTAACC		57	18956802	18956820	GGTACTTCACGAATCCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CadN2	FBgn0032655	FBtr0110886	3	1	2	100	2L	17810933	17815586	GATCACAATGAGTCGACGA		59	17810851	17810869	CTTGCCACGTAAATGACAC		59	NA	
Drosophila melanogaster	50	CadN2	FBgn0032655	FBtr0110886	1	1	2	95	2L	17810926	17815581	CAATGAGTCGACGAATATTCG		59	17810851	17810869	CTTGCCACGTAAATGACAC		59	NA	
Drosophila melanogaster	50	CG33928	FBgn0053928	FBtr0091932	2	1	1	84	2L	17436341	17436362	GTTCGGCTTTATAAGATACCAG		58	17436222	17436241	GGTTAAAGGGCATTAGACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6860	FBgn0032633	FBtr0080969,FBtr0080968	2	2	2	83	2L	17372762	17372782	GTTATACTGTGTCATTTGGCC		59	17372634	17372717	CAACTTATTGACACCGGGA		59	NA	
Drosophila melanogaster	50	CG31819	FBgn0028893	FBtr0080821	1	1	1	97	2L	16213018	16213134	GCCTATCAGTCCATGTACTC		59	16213191	16213212	TGAATATCTCTAATCGGTCGAC		59	NA	
Drosophila melanogaster	50	BicC	FBgn0000182	FBtr0080804,FBtr0080803	2	2	3	154	2L	16044464	16044798	TTCCATGACATCATGAACAC		58	16044978	16044996	GAGTCAAGACTGCTAAGGA		58	NA	
Drosophila melanogaster	50	CycE	FBgn0010382	FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775	2	5	5	97	2L	15729492	15729577	TACATTTAGTCGGGAGATGG		58	15729414	15729432	AGATCACTCGGAAGAATGG		58	NA	
Drosophila melanogaster	50	vas	FBgn0003970	FBtr0080701	1	1	1	102	2L	15073416	15073495	CGATCCAAGCTAATAGAAATCC		58	15073558	15073576	TTTCTGACAGGAAGGAAGC		59	NA	
Drosophila melanogaster	50	CG4480	FBgn0032553	FBtr0080684	3	1	1	60	2L	14871564	14871584	GACTATCTATCACTACAAGCC		57	14871458	14871476	ATAAACCTTTATCCAGCCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7516	FBgn0028529	FBtr0080639	3	1	1	101	2L	14353767	14353786	TGACTATCAGTTCGTCACAG		59	14353625	14353703	TCCATAAAGTATCCGTGCA		58	NA	
Drosophila melanogaster	50	smi35A	FBgn0016930	FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289	2	5	5	90	2L	14195795	14195814	CGGATGGATCTCATAATGTC		57	14189225	14195742	AGGTTCAAGCTCATTAGCT		58	NA	
Drosophila melanogaster	50	CG5439	FBgn0032476	FBtr0080435	2	1	1	60	2L	13177382	13177402	AATCTCACAGAAGTTCAGTGG		59	13177423	13177442	TTCCTGAACAGATTCATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ACXA	FBgn0040510	FBtr0080415	3	1	1	80	2L	12924118	12924194	TGAACTACAAGCTCAACCTG		59	12924234	12924255	TAAGCAGGATTATGATGGACTG		59	NA	
Drosophila melanogaster	50	CG6153	FBgn0032445	FBtr0080394	3	1	1	62	2L	12693623	12693641	TTTGGCGAAGACATAACAC		58	12693729	12693748	ATGAGCTTCTGTGAACTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	bun	FBgn0010460	FBtr0111004,FBtr0080377	1	2	6	178	2L	12477157	12536283	GACTGAAAGTGCATCTGGA		59	12458106	12458124	TGAGAATGCTGTTCTCGAG		59	NA	
Drosophila melanogaster	50	CG31862	FBgn0051862	FBtr0080350	3	1	1	60	2L	12339353	12339372	GATAAGGACACTGACAAGGA		58	12339395	12339413	ACAAATCGATGATATGGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17218	FBgn0032421	FBtr0080343,FBtr0080342	3	2	2	62	2L	12173530	12173548	ATAGGCTAGGACTGATGGG		59	12173574	12173592	GAAGATGAGCCACAATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16965	FBgn0032387	FBtr0080284	3	1	1	233	2L	11983090	11983164	TAAGGGAGCTAGATTTCCCT		59	11983360	11983378	TTGGTGGAATCATCACAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG16833	FBgn0026147	FBtr0080152,FBtr0080150	1	2	3	82	2L	10990775	10991068	TAACATACTCTCGGAACGC		59	10991114	10991132	CACGGTTGTAGAAGTACGA		59	NA	
Drosophila melanogaster	50	UbcD2	FBgn0015320	FBtr0080116,FBtr0080115	3	2	2	128	2L	10766393	10766411	TGCTCACAGACTGTAATCC		58	10766108	10766126	AACTTACGCATCATGTTGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7456	FBgn0032258	FBtr0080038	1	1	1	80	2L	10487109	10487129	ATCATGAAGAACTCCGATCTG		59	10486989	10487070	CTCCATGAAATATCTTTCCAGC		59	NA	
Drosophila melanogaster	50	rho-5	FBgn0041723	FBtr0089855	2	1	1	90	2L	10369522	10369602	TTGTGCTCTCAGATATCGTG		59	10369451	10369469	TGAGCAATCGGTATAGCTG		59	NA	
Drosophila melanogaster	50	Sps2	FBgn0032224	FBtr0079998,FBtr0079997	2	2	2	139	2L	10343347	10343422	ATAATACTACCGTCAAACGC		57	10343524	10343542	TCACTACATTCAGACAGCA		58	NA	InUTR
Drosophila melanogaster	50	Ror	FBgn0010407	FBtr0079978	2	1	1	84	2L	10254250	10254268	TGGAAAGTTTACGACCGAG		59	10254316	10254393	GTAGTATGGCTGCATTCCA		59	NA	
Drosophila melanogaster	50	CG4598	FBgn0032160	FBtr0079877	1	1	1	80	2L	9919099	9919178	TTTGACTTCGTCTAGCTCC		59	9919222	9919240	CGAATCCTGTCCTTATCCG		59	NA	
Drosophila melanogaster	50	Fbp2	FBgn0000640	FBtr0079808	2	1	1	60	2L	9427354	9427372	CTACATGGACAAGACACAG		57	9427393	9427414	ATAGACAGAGGACATGTTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12439	FBgn0032094	FBtr0079767	2	1	1	60	2L	9077469	9077488	CTTCACCGAAATAATCCTGC		58	9077509	9077529	AAATCGATAGGTCATCCTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13101	FBgn0032084	FBtr0079783,FBtr0079784	2	2	2	83	2L	8978779	8978870	CCAGAATATGCGGATAAACTG		58	8978716	8978736	CAGAGATATGATGTGCATACC		58	NA	
Drosophila melanogaster	50	CG18088	FBgn0032082	FBtr0079759	1	1	1	130	2L	8968366	8968781	GATACAATAAGGTTGCCGAC		58	8968874	8968892	TATCATTGGCATCTCGTCC		59	NA	
Drosophila melanogaster	50	raw	FBgn0003209	FBtr0079746,FBtr0079745	1	2	2	81	2L	8712592	8712681	ACAATCCTCAAGTATCCGA		57	8712529	8712547	AAGAATAATACACGGGCCT		58	NA	
Drosophila melanogaster	50	CG8455	FBgn0031997	FBtr0079588,FBtr0079587	1	2	2	89	2L	8200026	8200113	TTATGCTGGCCACTATAACC		59	8200162	8200183	CACTCAGATAGCTATTGAAGAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Trf	FBgn0010287	FBtr0079542	3	1	1	61	2L	8073573	8073591	ATCTATCGCATGGTCAAGC		59	8073615	8073634	AATACAACCTTTCCGTTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7196	FBgn0031944	FBtr0079482,FBtr0079483	1	2	2	124	2L	7765144	7765222	GAAATGCCAAGGATATTCGC		59	7765309	7765327	GATATCTTGTTCCGGCTCC		59	NA	Nonspecific
Drosophila melanogaster	50	CG13786	FBgn0031900	FBtr0079409	2	1	1	205	2L	7251668	7251686	CACTTCAGAAAGTTGCGAC		59	7251357	7251447	GTGGTATTGGACTTGATGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG13766	FBgn0031834	FBtr0079330	3	1	1	74	2L	6565805	6565823	GAATTGGCCTTCTATCTGC		58	6565749	6565768	ATTGTTCATGTTCTCATCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31638	FBgn0051638	FBtr0113411	1	1	2	253	2L	6492779	6492797	AAGCTAAAGAAGTTGCTGG		57	6495094	6496065	CTACGGAGTCTATTCTGGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13998	FBgn0040949	FBtr0079241	3	1	1	61	2L	5956684	5956702	CGATGTTCCAGTTTCTGGA		59	5956641	5956659	CAGTAGGTGAGACCAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14024	FBgn0031697	FBtr0079082	2	1	1	139	2L	5313078	5313276	TATATTAGCTGGCTACGATGTG		59	5312960	5312978	GCACAAAGAGAAAGGACAG		58	NA	
Drosophila melanogaster	50	CG31919	FBgn0031674	FBtr0079007,FBtr0079006,FBtr0100270,FBtr0079008	3	4	4	116	2L	5047102	5047120	AGATGGATCCACATAGTGC		58	5047198	5047284	CGTTATAGATAGCTGCATTCC		58	NA	Nonspecific
Drosophila melanogaster	50	Cg25C	FBgn0000299	FBtr0079002,FBtr0079001,FBtr0079003	2	3	3	106	2L	5034886	5034904	GAGACATTGGTCCAAGAGG		59	5034973	5035074	TCCAATAAGACCTTGACGTC		59	NA	
Drosophila melanogaster	50	CG15440	FBgn0031607	FBtr0077454	1	1	1	60	2L	4454130	4454148	TTCGTCAACTTCATATCCG		57	4454088	4454106	GCTTACCGTTTAGCTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdsw	FBgn0021967	FBtr0077520,FBtr0077521	3	2	2	82	2L	3467046	3467136	GAACTGGTTCATCAAGTATGG		58	3467180	3467198	AGATCAGACGATGCTTCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG34406	FBgn0085435	FBtr0112671	1	1	1	110	2L	3172132	3172150	ATTGGACAAGGATGTCCAG		59	3171988	3172058	TGTGGAAAGGACTTATGCC		59	NA	
Drosophila melanogaster	50	Rbp9	FBgn0010263	FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635	3	7	7	80	2L	2963120	2963232	GCAATCTGTTAAGGTGATTCG		59	2963273	2963292	TCTTCGTAATTCGTCATGGT		59	NA	
Drosophila melanogaster	50	CG3119	FBgn0031466	FBtr0077691	3	1	2	122	2L	2837281	2837358	CAGATGACGATACGTACGT		58	2835536	2837195	CGCCAGACATATAACTCAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG15394	FBgn0031439	FBtr0113016	2	1	1	74	2L	2592182	2592200	GATTTCTGTTCATGTGGGC		59	2592297	2592315	TTACGTACGAGGTCTTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15357	FBgn0040719	FBtr0077871	2	1	1	76	2L	1945393	1945411	ATATGATCCATGTGGCCAG		59	1945335	1945353	GTAGAACAAAGTGGATCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14351	FBgn0031349	FBtr0077875	1	1	1	142	2L	1600692	1600710	TACTCCCACTTATCCTGGG		59	1600816	1600970	AAAGTCCACCTGATCACAC		59	NA	
Drosophila melanogaster	50	Oseg3	FBgn0031262	FBtr0078078,FBtr0078077	3	2	2	87	2L	554391	554409	AATTCTGGAGATCCAGCAG		59	554261	554340	CAGTTCGGGTTTAATCAGC		58	NA	
Drosophila melanogaster	50	spen	FBgn0016977	FBtr0078122	1	1	3	80	2L	199974	200131	CATAACACCGAATGATTCTACG		59	200171	200190	CCTCGCATTAAATGATGCTG		59	NA	
Drosophila melanogaster	50	Ser6	FBgn0011834	FBtr0077272	1	1	1	60	X	20834308	20834328	ACCAGAACCTACATCTTAACC		59	20834268	20834286	TCACATGATTCACGTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NPC1b	FBgn0031140	FBtr0077239	1	1	1	151	X	20807598	20807747	GAGGATTGTCTTCGAGTCC		59	20807862	20807880	AAGAAGGTGAGCACTAGTC		58	NA	
Drosophila melanogaster	50	CG32506	FBgn0052506	FBtr0077309	2	1	1	80	X	20332614	20332686	CCAGCATGAAGTATCTGTG		57	20332730	20332748	CATTGCTCACCAGATACTC		57	NA	
Drosophila melanogaster	50	CG14234	FBgn0031065	FBtr0074790	3	1	1	106	X	19631524	19631543	TGAAGTACGTGACCATTCTC		59	19631611	19631743	GCCGATTATCCAATTGATGG		59	NA	
Drosophila melanogaster	50	CG34422	FBgn0085451	FBtr0112722	1	1	2	101	X	18749365	18749383	GTACAACTTCCTCGTCGAG		59	18749512	18749530	ATGGTATTGTAGGCCTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Aats-his	FBgn0027087	FBtr0074593,FBtr0074594	1	2	2	238	X	18413274	18413353	TAAGTTGGATAAGTCGCCC		59	18413555	18413573	TAACTCGCTTATCCAGACC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13008	FBgn0030780	FBtr0074323	1	1	2	91	X	16606047	16607822	TAAATTCAAGGCGTCAGCA		59	16607877	16607895	AGGATTCCCTAGAGTGGTG		59	NA	
Drosophila melanogaster	50	eIF-2alpha	FBgn0004925	FBtr0074300	2	1	1	106	X	16339898	16340218	TCTATGTAATGACCACATCCAC		59	16339813	16339831	GAACTCTCCATCGTACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7860	FBgn0030653	FBtr0074045	3	1	1	216	X	15463321	15463339	TATCGGACTCCAGGATAGC		59	15463518	15463537	ATTAAACTGGCCTCTAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9518	FBgn0030590	FBtr0073983	1	1	1	60	X	14759142	14759161	GTGGAATTTGTGAAACATGG		57	14759101	14759119	AGATGATAACCTCCCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10353	FBgn0030349	FBtr0114451,FBtr0114452	2	2	2	125	X	11773010	11773092	CATCTACCAGAACATTATCACC		58	11772906	11772924	TACTCGATAATGTGCTCCC		58	NA	
Drosophila melanogaster	50	CG15220	FBgn0030322	FBtr0073535	1	1	1	60	X	11509440	11509459	GAACATCGACTTCGATAAGG		58	11509399	11509420	CTTGACATTGTTAATCAGGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11696	FBgn0030314	FBtr0073512	2	1	1	89	X	11469163	11469181	ACCATGCATCTTAAAGGAC		57	11469293	11469311	ACTTAGCTCAAACTTGGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15250	FBgn0030165	FBtr0071428	1	1	1	79	X	9861075	9861095	GTCACCAATATCTCAAAGTCG		58	9860856	9860874	TTAAAGAAGAGCACGAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32733	FBgn0052733	FBtr0071001	1	1	1	198	X	6846587	6846605	CTTCTGTCCAGGAATCGTC		59	6846767	6846785	GTAACGACTGCACATTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	XRCC1	FBgn0026751	FBtr0070763	1	1	1	120	X	5225639	5225719	TGTACCCATCTGATATGCG		58	5225803	5225821	ATGGCAGGTACTTCTTCAG		58	NA	
Drosophila melanogaster	50	CG4068	FBgn0029738	FBtr0112950	1	1	5	127	X	4824087	4825626	CATTTAAGCACAAATGCAGC		58	4823979	4824000	GTTCACTGTTATTGTGCTAGTG		59	NA	InUTR
Drosophila melanogaster	50	CG12681	FBgn0029730	FBtr0070717	2	1	1	60	X	4770020	4770038	AAGCACAACAATAGTCCGA		59	4770062	4770080	TACGCAATCGTTGATTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7024	FBgn0029722	FBtr0070712	3	1	1	131	X	4599598	4599617	TGATGAAGTTCAGTTGTGTC		58	4599711	4600047	ACTTGAACGTGTTCTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL30	FBgn0029718	FBtr0070682	1	1	1	110	X	4542116	4542214	CTACTATCCCAGGACTCCC		59	4542288	4542306	ATTCGATTCTCCCAGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3546	FBgn0029716	FBtr0070679	3	1	1	61	X	4452877	4452895	CGACTATGACGAAGAGGAC		59	4452920	4452938	CTCTGTAGTAGCCATTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3626	FBgn0029706	FBtr0070652	1	1	1	82	X	4263412	4263498	ACCTATAAGGAATTGGATGTGG		59	4263541	4263559	AGGACATAGCCCAATTCAC		59	NA	
Drosophila melanogaster	50	Ilp7	FBgn0044046	FBtr0070577	3	1	1	105	X	3562424	3562442	ATCAAGAAGACAACCACGG		59	3562632	3562651	ATATCGATGGAGTGTTTCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32813	FBgn0052813	FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219	3	4	6	225	X	1283913	1283931	CAACCATTCGTTCATGGAC		59	1284338	1284356	CTTGATAAGGATCACGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG32813	FBgn0052813	FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219	1	4	6	222	X	1283913	1283931	CAACCATTCGTTCATGGAC		59	1284335	1284353	GATAAGGATCACGTCCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41328	FBgn0085618	FBtr0114062	1	1	1	81	U	1279473	1280594	TAACAAGAACACGCAATTGC		59	1279411	1279432	GAGTAAGAAACCTTACATTGCC		59	NA	
Drosophila melanogaster	50	CG40339	FBgn0058339	FBtr0113867	3	1	2	108	U	1062312	1062330	AACAGGTGATATTGCAAGC		58	1062401	1062865	TCGTTATCTCCACATAACGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS3A	FBgn0017545	FBtr0089177,FBtr0089175,FBtr0089176	2	3	3	61	4	87508	87526	TTCAAGACCGTAATGTGCT		59	87364	87483	CCTGTACTTGTCCGTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aph-4	FBgn0016123	FBtr0085734,FBtr0085733	3	2	2	215	3R	26877631	26877709	ATCTCGTATGCCAATGGTC		59	26877888	26877906	AATCAAACTGGAACCAGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	wts	FBgn0011739	FBtr0085720	1	1	1	81	3R	26617852	26617938	CATACCAGGTGGTGATCTG		59	26617789	26617807	CTCGGCGATGTAGAATCTG		59	NA	
Drosophila melanogaster	50	PH4alphaPV	FBgn0051015	FBtr0085670	2	1	1	80	3R	26473291	26473383	CCTGTTAAAGCTTAACCAGC		59	26473230	26473248	AGTTTAATATCGTGCGGGT		59	NA	
Drosophila melanogaster	50	CecB	FBgn0000278	FBtr0085640	3	1	1	230	3R	26039424	26039445	GAACTTCAACAAGATCTTCGTC		59	26039157	26039176	ATAAGAGAAATGAGCGGGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Nlp	FBgn0016685	FBtr0085552	2	1	1	237	3R	25830773	25831023	CTACGGAGTCACTTTGACC		59	25835480	25835498	CTTCGACTCGTAGAACTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2321	FBgn0039663	FBtr0085436	3	1	1	158	3R	25313035	25313055	TTAAGATACTCTTCGAAGCGG		59	25312844	25312862	ATCAAATTGCAAGCTCACC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113301,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	1	8	8	80	3R	24639526	24639610	TTGACAATGAGTCTGATGC		57	24639653	24639672	AATATCCGTAGCAGTAAGGA		57	NA	
Drosophila melanogaster	50	CG34295	FBgn0085324	FBtr0112491	1	1	1	60	3R	24616057	24616075	ACGTTTATGGATTTCGCTG		58	24616095	24616117	CCTAGACTTATGTAGAGATCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4849	FBgn0039566	FBtr0085257	1	1	1	88	3R	23790243	23790322	CATAAACAAGATTGATCGCCTC		59	23790371	23790389	TGACTTCCTCCACAATGTG		59	NA	
Drosophila melanogaster	50	l(3)mbt	FBgn0002441	FBtr0085175	1	1	2	133	3R	23098733	23098753	CGAATCATACGGTTAAAGCAG		59	23097907	23098569	GTTTGTTATTACCCGCACG		59	NA	InUTR
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085143,FBtr0085139	2	2	12	93	3R	22892852	22892870	AATGATGAGGGAGTTGTCC		58	22892194	22892339	AGACAAAGGTATCCGATGG		58	NA	
Drosophila melanogaster	50	Tl	FBgn0003717	FBtr0085060,FBtr0085059	2	2	2	103	3R	22664652	22664670	GGATAATTTGCTAACCGGC		58	22664854	22664872	CTCTGGAATCGATGGTACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	exo84	FBgn0086476	FBtr0084978,FBtr0084977	1	2	2	192	3R	21876053	21876073	CGACACATGGATTAATCTCAC		58	21875826	21875899	TACAAAGTTGGGATCCACG		59	NA	
Drosophila melanogaster	50	CG14540	FBgn0039398	FBtr0084948	2	1	1	147	3R	21786302	21786388	GAACAAGTCATTAGCAAGGT		58	21786498	21786516	AAAGACTCAGCATTTCCTG		57	NA	
Drosophila melanogaster	50	CG17370	FBgn0039381	FBtr0084909,FBtr0084910,FBtr0084911	2	3	3	88	3R	21711544	21711628	GGAACCAACGGATAAATTCG		59	21711678	21711697	AGAACATGATGAGCAGTGAG		59	NA	
Drosophila melanogaster	50	msi	FBgn0011666	FBtr0084881,FBtr0084882	2	2	2	133	3R	21425812	21425830	CCCTCATATCACAGAACCC		59	21425927	21426004	GTAGGGTGCATATCTGACG		59	NA	
Drosophila melanogaster	50	CG13625	FBgn0039210	FBtr0084671	3	1	1	65	3R	20410610	20410628	GACGAAGATCTACTGCTGG		59	20410563	20410581	ATCCTCTTCGATGTACTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13624	FBgn0039209	FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795	3	6	6	127	3R	20386540	20386625	TTAAGGTGTACAAGCACAG		57	20386431	20386449	AGTCATGTCATTGATGGTG		57	NA	
Drosophila melanogaster	50	Golgin84	FBgn0039188	FBtr0084629	3	1	1	61	3R	20182199	20182272	ACAGATGATGTCAAAGCAC		58	20182156	20182174	ACACGATTATCGAATGGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5746	FBgn0039186	FBtr0084631,FBtr0084630	2	2	2	116	3R	20172702	20172815	ATCAGAACTACAACTCGACG		59	20172605	20172623	GTCCGGTAGCATTGTAGTC		59	NA	
Drosophila melanogaster	50	spas	FBgn0039141	FBtr0084533,FBtr0084534	2	2	2	240	3R	19864977	19865327	GAACGAAGGTCACAAAGAG		58	19865676	19865694	CTCTTCTTTCTGCTTCTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG12268	FBgn0039131	FBtr0084513,FBtr0084514	2	2	2	78	3R	19769934	19769952	CTTCTTCCACTATCTGCCC		59	19769816	19769893	GACATTGAGTAAGAATGGCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG7048	FBgn0038976	FBtr0084257	2	1	1	149	3R	18313401	18313419	GGTTCGTCATAGACATCGG		59	18313593	18313611	CTGAGTTATAGAAGCGCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6028	FBgn0038924	FBtr0084187,FBtr0084186	3	2	2	63	3R	17850248	17850267	GATGTGATCAATCGTCTGTC		58	17850204	17850222	TTCCGGTGACTATGATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DNApol-alpha180	FBgn0004493	FBtr0084115	1	1	1	80	3R	17495950	17496035	CGACAATTTCTCTTAGATCCC		58	17495890	17495910	GTCGAACTCCTTGTATATGTC		57	NA	
Drosophila melanogaster	50	CG7922	FBgn0038889	FBtr0084109	3	1	1	94	3R	17309566	17309680	CAACACTTTCAGGCAAACC		59	17309738	17309756	CTGTGTTGAAGGAGTAGCC		59	NA	Nonspecific
Drosophila melanogaster	50	CG6475	FBgn0038886	FBtr0113260	1	1	1	97	3R	17225165	17225183	ATCACACCGCTATCATTGG		59	17225034	17225104	ATCATCGCAGATATGTCCG		59	NA	
Drosophila melanogaster	50	CG17273	FBgn0027493	FBtr0083991	3	1	1	278	3R	16651604	16651624	GATAAGGTTCGTCCCTATGTC		59	16651282	16651365	GCCAATATCATTTAGCTGCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	Pi3K92E	FBgn0015279	FBtr0083940,FBtr0083941	1	2	2	83	3R	16457025	16457246	GCTTACACTTTCTGAAAGACG		59	16456962	16456980	TTTCCAGGTACGATTCGTG		59	NA	
Drosophila melanogaster	50	CG34118	FBgn0083954	FBtr0110821	2	1	1	94	3R	16306477	16306495	ATAGAGTCCTTTACGAGCA		57	16290819	16306419	TGTCTACTGTTCAGTTGGA		57	NA	InUTR
Drosophila melanogaster	50	Pk92B	FBgn0014006	FBtr0083818,FBtr0083819	1	2	2	80	3R	15708427	15708448	GATATGATCCTGGAGATGACTG		59	15708486	15708573	GTACTCGTACTCGATATTAGCG		59	NA	
Drosophila melanogaster	50	CG15025	FBgn0038709	FBtr0083768	1	1	1	60	3R	15316150	15316301	TCTAAGCCTTCTGTATCCG		58	15316108	15316132	CTATATCCTTGATACTCCTAGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NP15.6	FBgn0027785	FBtr0083712	1	1	1	93	3R	14853271	14853289	GAAGGATGAGACCATCACG		59	14853346	14853364	GTAGTCGAATCCGTAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14294	FBgn0038656	FBtr0083726	1	1	1	60	3R	14727659	14727680	GTATTGGATAGTGCATACACTG		58	14727620	14727639	GCTCACCACTGTAGAATACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7708	FBgn0038641	FBtr0083669,FBtr0083668	3	2	2	99	3R	14509014	14509032	CTTCTGTCCTATGTTGCAG		57	14509095	14509243	AATCTGTCTCGTTCCAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	mRpS11	FBgn0038474	FBtr0114468	1	1	3	100	3R	12898898	12898957	TCACAAAGTATCCCTCTTTCC		59	12899019	12899037	CTTGAGCTGCTATGTTGGT		59	NA	
Drosophila melanogaster	50	CG31274	FBgn0051274	FBtr0083369	2	1	2	62	3R	12819335	12819355	CGTAAACCTGGACATAAACAC		59	12819379	12819461	TTGTTGATCCACAAGATCC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31088	FBgn0051088	FBtr0083241	3	1	1	102	3R	11776408	11776488	TTGGAGTACTACATCAGCA		57	11776247	11776265	GCATTGCATAAGCTAAGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9597	FBgn0038371	FBtr0083190	2	1	1	60	3R	11664356	11664376	TGTTCTAGGAGCTAGAAAGAG		58	11664316	11664334	GTTGCCTGTAGATGTTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pxb	FBgn0053207	FBtr0083162,FBtr0083161	1	2	2	85	3R	11497624	11497642	ATCGAGGAGGTATACCACC		59	11497691	11497709	AGTTCCATCATATCCAGCA		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG31302	FBgn0051302	FBtr0083097,FBtr0083098,FBtr0083096	1	3	3	127	3R	11211329	11211407	CTAGATTTGGACACTCGCA		59	11211498	11212200	TCCTCTGGAGGATCATAGG		59	NA	
Drosophila melanogaster	50	CG8508	FBgn0038123	FBtr0082783	2	1	1	60	3R	9012028	9012046	CAAGTTTATGTGGAGGCTG		58	9011986	9012005	ATAATAGCGGTTCTTTGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33631	FBgn0053631	FBtr0091608	2	1	1	60	3R	5889833	5889902	TCAGAAACCGATACTTCGT		58	5889926	5889944	CTTCATAAAGCGAGAGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sage	FBgn0037672	FBtr0081983,FBtr0081982	2	2	2	63	3R	5088834	5088852	AAGCTACCCATATCCAAGC		59	5088728	5088807	TGGCAATCCTCAAACTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pum	FBgn0003165	FBtr0081994	1	1	5	106	3R	4982876	4982894	TGGATTACATCACTGGCTG		59	4906735	4924427	GAAACAGTTGTTGATTGTGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG11755	FBgn0037611	FBtr0081903	3	1	1	61	3R	4504238	4504256	GATCCTTTCCAACCACCTC		59	4504279	4504299	CCCATTGCGATATAGTATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15580	FBgn0037398	FBtr0078622,FBtr0078621	1	2	2	80	3R	1881012	1881141	AAGAATACCCGAATCCTATACG		59	1880953	1880972	CACTATCATGTCCACTTCGA		59	NA	
Drosophila melanogaster	50	CG34112	FBgn0086608	FBtr0110805	3	1	1	61	3R	219579	219597	TTCTTTGACGGAGGATCTG		58	219477	219556	GTTAGATATGGGCTCTTCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aux	FBgn0037218	FBtr0078965,FBtr0078966	2	2	2	125	3R	52069	52087	AAGGATACTCCTTTGGCAG		58	52175	52264	TCTTACCATCAGTCCATTCC		58	NA	
Drosophila melanogaster	50	CG34410	FBgn0085439	FBtr0112678,FBtr0112677	3	2	2	200	3L	21326357	21326460	TTTAATAGGCAACAAGGCC		57	21327025	21327043	TTGAACTTTCCATCATCGC		58	NA	Nonspecific
Drosophila melanogaster	50	CG10508	FBgn0037060	FBtr0078304	1	1	4	120	3L	21208105	21208123	ATCAATGACGTCCTCATCG		59	21208206	21208688	GACATAATCGGCTTTCAGTG		58	NA	
Drosophila melanogaster	50	CG32428	FBgn0052428	FBtr0078222	2	1	1	61	3L	20465780	20465798	GTGTACACCAAGAGATGTC		57	20464245	20465755	AAATCATTGCAGTACTGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8533	FBgn0036907	FBtr0074877,FBtr0114601,FBtr0074878,FBtr0074876	1	4	4	169	3L	19794992	19795010	CATCTTCGACTACAAGCCT		59	19795205	19795274	ATGGTTCAGATGTGTCCAC		59	NA	
Drosophila melanogaster	50	CG14087	FBgn0036868	FBtr0074996	1	1	1	60	3L	19380827	19380845	CAAGCAGGATGAATTCCAG		58	19380869	19381039	CTTTGGGTCACGTCTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075008	2	1	11	86	3L	19297155	19297240	ATGCACAATAGCAAGATCAC		58	19297088	19297106	GTTCTTGCGAATCATTTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6839	FBgn0036831	FBtr0075069	3	1	1	61	3L	18911646	18911664	AATTACCTTCCAAACGGCT		59	18911689	18911707	CTTGGGTGTACAGTTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7441	FBgn0036763	FBtr0075141	1	1	1	87	3L	17843610	17843628	AGTCCCGTCTTCTAAAGGA		59	17843679	17843885	TGAGTGGACTTGTAAAGCA		58	NA	
Drosophila melanogaster	50	CG5589	FBgn0036754	FBtr0075170	2	1	1	111	3L	17796349	17796368	TTCGTACATTCATCGGATCG		59	17796196	17796275	TATTATAAGCGCGATGCCT		58	NA	
Drosophila melanogaster	50	Oatp74D	FBgn0036732	FBtr0075173	1	1	1	80	3L	17494564	17500728	ACGCCTAACAGAAATACAC		57	17500771	17500790	GTAGATTGGTTGATCTGGTC		57	NA	InUTR
Drosophila melanogaster	50	CG32165	FBgn0042178	FBtr0075312	3	1	1	132	3L	16590014	16590032	GTGCTTACCTTTGTAGGCA		59	16590128	16590202	AATCATCGTCACCTTCCTC		59	NA	
Drosophila melanogaster	50	CG16838	FBgn0036574	FBtr0089713,FBtr0089714	3	2	2	210	3L	16128868	16128886	TTGATAAGCCGGTTCAGAG		59	16129469	16129487	TAATCCGTCGTGAAACTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Eig71Ek	FBgn0014851	FBtr0075575	3	1	1	131	3L	15654539	15654560	GATTTACATCCAGAATAGGACG		58	15654652	15654726	AAATCAGAAGACAGGTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12316	FBgn0036483	FBtr0075651,FBtr0075652	2	2	2	102	3L	15128060	15128080	GACCATATTGAATCATCTGCG		59	15127561	15127996	AGAACTGAGAACCACTTCG		59	NA	
Drosophila melanogaster	50	CG13474	FBgn0036439	FBtr0075711	3	1	1	60	3L	14690019	14690037	TTCAACTGAGCAATAGCGA		59	14689977	14689998	GAGTCACAACTTCCTATAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13474	FBgn0036439	FBtr0075711	1	1	1	60	3L	14690020	14690038	TTTCAACTGAGCAATAGCG		58	14689978	14689998	AGTCACAACTTCCTATAGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mpcp	FBgn0026409	FBtr0075718,FBtr0075719	3	2	2	178	3L	14532000	14532018	CAGACTATTCCCGGATACG		59	14532160	14532661	ACCACATACTTGTAGAGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG10133	FBgn0036366	FBtr0075825	2	1	1	60	3L	13442727	13442746	GAGGAATTTACCCTACAGGC		59	13442686	13442705	GGTTCAATGTAGAACTGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10660	FBgn0036288	FBtr0075976	3	1	1	103	3L	12481308	12481663	GAAATATAGGTTCCGTCACCT		59	12481225	12481243	ATCTTTGATAGGCAGCCAC		59	NA	
Drosophila melanogaster	50	wls	FBgn0036141	FBtr0076218	3	1	2	201	3L	11161301	11161322	CATGATATGGAAGGTGTTTAGG		58	11160689	11160919	CTTGAAGCGATAGATAAGACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6628	FBgn0036072	FBtr0076311	3	1	1	177	3L	10159648	10159666	AACTCTGGTCAGAACTTGG		59	10159431	10159507	AATTGCGAATGGAATCTCC		58	NA	
Drosophila melanogaster	50	CG34427	FBgn0085456	FBtr0112728	3	1	1	135	3L	8798560	8798578	TTCAACTGTAACCACCGAG		59	8798675	8798761	GTAACAACTAATGTAGCGCTG		59	NA	
Drosophila melanogaster	50	Srp9	FBgn0035827	FBtr0076750	2	1	1	69	3L	7929588	7929606	AGAACTGGGATGATTTCGA		58	7929639	7929657	GTAAGTCGACAGTTCTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112696,FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112697,FBtr0112702,FBtr0112698	2	8	10	92	3L	7703513	7703532	GATACTCGTGGAAAGGTCAG		59	7703375	7703460	ATGGTCATTATCGAGAAGCAG		59	NA	
Drosophila melanogaster	50	CG6592	FBgn0035669	FBtr0077044	2	1	1	84	3L	6053712	6053730	CTACCCTACCTGGAATCCA		59	6053778	6053854	GATGCGCTCATTAAAGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32250	FBgn0052250	FBtr0073287	1	1	1	82	3L	4319226	4319244	TATCCACTGGATACAGTGC		58	4320168	4320186	ATCTCCTTGATCACTTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hexo1	FBgn0041630	FBtr0073235,FBtr0073237,FBtr0073236	3	3	4	98	3L	4289086	4289104	GTTGACGAAATGAAGTCGA		58	4289166	4289258	GTAAACCAAGTCATCCGAG		57	NA	InUTR
Drosophila melanogaster	50	CG1136	FBgn0035490	FBtr0073203	3	1	1	91	3L	4057521	4057539	CTACATTGCCGATAAGCAG		58	4057594	4057668	TGGATTTAATGGCGTCCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32266	FBgn0052266	FBtr0073147	1	1	1	123	3L	3791333	3791353	CTGTACAACGATAATTCCCGA		59	3791438	3791456	TTAATCTGCAGTTGCTCCA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14959	FBgn0035427	FBtr0073048	2	1	3	97	3L	3267227	3267245	CTCATTCGATTGCAAGAGG		58	3267443	3267680	CGTTCAGTAATCCCTCCTC		59	NA	
Drosophila melanogaster	50	pfk	FBgn0035405	FBtr0073028,FBtr0073027	2	2	2	137	3L	3160099	3160190	GAATCATCTTAAGTGGATGGG		58	3160289	3160307	CTTAGCACGAATAGATGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32305	FBgn0052305	FBtr0072876	3	1	1	85	3L	2250639	2250660	CATGATTAAGTACACCATGCTC		59	2250705	2250782	CAGGGTATGTAGCTTCTTCG		59	NA	
Drosophila melanogaster	50	CG1140	FBgn0035298	FBtr0072843,FBtr0072844	2	2	2	83	3L	1966297	1966373	GATGATTCCTGGCAAACTG		58	1966420	1966438	ATGGTGATGATCACCTTGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG9133	FBgn0035198	FBtr0100645,FBtr0100647,FBtr0100646	2	3	3	62	3L	1254991	1255009	ATCATGGACACCATGAAGG		59	1255035	1255496	GTAGCAAACCTCGATACCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG3402	FBgn0035148	FBtr0072559	3	1	1	168	3L	652265	652451	CGGATTATGGCATCTATGTG		58	652116	652134	ACCAGCATGTTGAGTATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7028	FBgn0027587	FBtr0072528	1	1	1	80	3L	209370	209465	GGACTCTAATTTCGATTCACC		58	209310	209328	TCCCAATTGTCTGTGAGAG		58	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-1347b	FBgn0083053	FBtr0113514	2	1	1	75	2R	14030551	14030572	GACTAAGATTCATAGTTGCCAG		58	14030608	14030626	TGTTATGCAGATGGTATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33398	FBgn0053398	FBtr0086390	1	1	1	62	2R	15637112	15637130	AATACATCGGTTCTCGTCC		59	15637068	15637086	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15861	FBgn0035084	FBtr0072410	3	1	1	119	2R	20831282	20831358	CAATCTGTGATCACAACTGC		59	20831182	20831200	TAGGTCAATAGTTCCCGGA		59	NA	InUTR
Drosophila melanogaster	50	tamo	FBgn0041582	FBtr0072281,FBtr0072282	2	2	2	152	2R	20017462	20017545	ACTCTCAAGACCTATTCGG		58	20017328	20017346	AACATTCGTAACCTGATCC		57	NA	
Drosophila melanogaster	50	CG3907	FBgn0034958	FBtr0072195,FBtr0072196	1	2	2	96	2R	19908023	19908097	GAGAAAGAGATAACGCTGG		57	19907945	19907963	TAATATTGCCCATGCTCTG		57	NA	
Drosophila melanogaster	50	Sox14	FBgn0005612	FBtr0072158,FBtr0072157	3	2	2	60	2R	19872011	19872029	AGACAACATTGTGAACGAC		58	19872050	19872071	CACATATGGAGGTATTTGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13566	FBgn0034942	FBtr0072206	3	1	1	82	2R	19849570	19849588	TCAAACTATGGCACCTGTG		59	19849452	19849528	GTGAAGAATATCAGTAGTCCCTC		59	NA	
Drosophila melanogaster	50	CG34423	FBgn0085452	FBtr0112724	2	1	1	211	2R	19246284	19246302	AGATTCAGTAGGTTTCGCG		59	19246477	19246555	GCTGCTTGTAGAAGAACTC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Gr59d	FBgn0041236	FBtr0071976	1	1	1	60	2R	18992559	18992578	GCTACGCTTATTTCAGTGAG		58	18992518	18992537	TTGTTTGGTAGAGGAGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dve	FBgn0020307	FBtr0071776,FBtr0071775	2	2	2	126	2R	18168265	18168283	CCAATATCGAGACCGACAG		59	18168373	18168504	ATTAATGAGCCTCTGGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG17974	FBgn0034624	FBtr0071611	2	1	1	84	2R	17236801	17236879	CCCATATTTGAGGACTACGG		59	17236736	17236757	GAGTAAATCTCATGATGGAGCA		59	NA	
Drosophila melanogaster	50	CG9236	FBgn0034558	FBtr0071516	3	1	1	115	2R	16768651	16769708	TTATGATTTCGATCAGGACGG		59	16769785	16769803	TTACCTTGTCGGCAATCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	mei-W68	FBgn0002716	FBtr0086461	3	1	1	158	2R	15345786	15345809	GTGGACTATACTATGACAATCCTC		59	15345984	15346002	TCATCAGCAGCCTTAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7097	FBgn0034421	FBtr0086504,FBtr0086503	2	2	2	80	2R	15104011	15104252	CATAACCGCAATCGAACTG		59	15104296	15104314	TTCGACATCAGGAATAGGG		58	NA	
Drosophila melanogaster	50	CG10953	FBgn0034204	FBtr0086997	2	1	1	153	2R	13053258	13053276	TTAAGTCCTATGTGCCACC		58	13053123	13053141	ATCTCCTCCAGAACCTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30463	FBgn0050463	FBtr0113380,FBtr0113379,FBtr0087112,FBtr0113381,FBtr0087113	2	5	5	184	2R	12568513	12568531	CATATTCCGGAAACGTTCG		58	12566563	12566646	ACTTGAGATCGTTACGGAG		58	NA	
Drosophila melanogaster	50	CG5089	FBgn0034144	FBtr0087107	3	1	1	60	2R	12486958	12486977	GATTATCGAACAGAATCGCC		58	12486997	12487018	ATTAGTTTCCCTCCTAGATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34186	FBgn0085215	FBtr0112379	3	1	1	127	2R	11032888	11032909	GCAATGACCTATATTTGTGGAG		59	11032583	11032689	TCAAAGACAACAAGACGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13350	FBgn0033890	FBtr0087606	2	1	1	63	2R	9869156	9869174	GTGCTAACCATACCAGGAC		59	9869111	9869129	AAACAACCATTAGGCTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6191	FBgn0027581	FBtr0087678	1	1	1	80	2R	9470345	9470366	CATCTTTGAGAACCAAATGGAG		59	9469354	9470306	TTCTCATAAGTGAAGCACCTC		59	NA	
Drosophila melanogaster	50	CG17034	FBgn0033837	FBtr0087708,FBtr0087707,FBtr0087710,FBtr0087709	1	4	4	91	2R	9306578	9306660	CTGCAAACTCGTACATAATACC		59	9306508	9306526	TCATCACTTCGGAGATGTC		58	NA	
Drosophila melanogaster	50	CG34438	FBgn0085467	FBtr0112739	3	1	1	118	2R	9021204	9021222	AATGAGAACGCAAACATGG		59	9021304	9021398	CTCGAATAGGTCGTAAGCA		58	NA	
Drosophila melanogaster	50	CG30047	FBgn0050047	FBtr0087905	1	1	1	80	2R	8241560	8241637	CACGATCGAGGATACTATTGG		59	8241674	8241697	GTAGAATAGGTAGCAGAAGTACAG		59	NA	
Drosophila melanogaster	50	Cam	FBgn0000253	FBtr0088002,FBtr0088001	1	2	2	93	2R	8156864	8156882	GAAACTCACAGACGAGGAG		59	8156936	8161287	CATCATAGTCACGAATTCTTCG		59	NA	
Drosophila melanogaster	50	Buffy	FBgn0040491	FBtr0088077	3	1	1	66	2R	7575228	7575323	ATATCATTTCTCAGGGTCGT		58	7575352	7575370	AAACCAGATCTTCTGAGGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13226	FBgn0033594	FBtr0088108	1	1	1	60	2R	7132164	7132182	TATGGTGGATACCAGAGAC		57	7132206	7132224	CACTGGAGCTATAAGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1648	FBgn0033446	FBtr0088494	3	1	2	81	2R	5700240	5700258	TCAGCATGTTTCCTAGTCG		59	5700118	5700136	TTCTTCTTGCTGAAGAGGT		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG2065	FBgn0033204	FBtr0088922	1	1	1	103	2R	3551709	3551729	CCAGGATATTATCAGGGAGAC		58	3551794	3551868	CTTTCTTGAATCCAGCAGC		59	NA	
Drosophila melanogaster	50	CG30492	FBgn0050492	FBtr0088917,FBtr0088913,FBtr0113382,FBtr0088916,FBtr0088914,FBtr0088915	1	6	6	93	2R	3526397	3527215	CGGTGCTAAATAAGATTGTGG		59	3527270	3527288	AAATTCTCGTCAATGTGGC		58	NA	
Drosophila melanogaster	50	ubl	FBgn0022224	FBtr0086211	3	1	1	84	2R	2697755	2697774	CAAAGCACGAGAAGATTGTC		59	2697625	2697711	CCATCGTGAATTTCATAGTCAG		59	NA	
Drosophila melanogaster	50	CR12628	FBgn0042701	FBtr0085952	1	1	1	60	2L	22226250	22226269	CCGTATTCAAGAGTTTCACC		58	22226289	22226310	CTCATCAACAGCATATTGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His3:CG33860	FBgn0053860	FBtr0091864	1	1	1	60	2L	21530165	21530183	TCGAAGATACCAACTTGTG		57	21530207	21530225	ATGTCTTTGGGCATTATGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr39a	FBgn0041244	FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510	1	4	4	60	2L	21297292	21297310	AAACAGCAAAGATGCTGAC		58	21297331	21297460	TCAATCATTCTATCCAACCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31680	FBgn0051680	FBtr0081383	2	1	1	62	2L	20640186	20640277	GGCTTTGTTCTAAGTGAATCC		59	20640301	20640319	ATTATGAAGCCTCCACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18806	FBgn0042129	FBtr0081307	2	1	1	60	2L	19966186	19966205	CATTCTCAGGGAGCTTAAGG		59	19966145	19966163	TGAATCATCGAAGTCCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scw	FBgn0005590	FBtr0081261	1	1	1	60	2L	19700503	19700521	CTTCAACACCAACGATGTG		59	19700461	19700479	GTATATCCTGAGCATGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31797	FBgn0051797	FBtr0081227	1	1	1	60	2L	19261315	19261333	GCAAGGGAAAGATGAACAC		59	19261273	19261292	TCTACTATACAGCTGATCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31793	FBgn0051793	FBtr0081138	2	1	1	80	2L	19006227	19006247	CTGATAATGCTGTGTATTGGC		59	19006289	19006366	AGCTGTGTTCTTAACCCAG		59	NA	
Drosophila melanogaster	50	CG10650	FBgn0046302	FBtr0081183	3	1	1	85	2L	18995650	18995671	TGTTTAACGAGTCCATCTACTC		59	18995006	18995604	CCACGAGTTAGAGTTCCTG		59	NA	
Drosophila melanogaster	50	Mst36Fa	FBgn0086681	FBtr0081074	2	1	1	190	2L	18675957	18676026	TGTTCGAAAGGAAATCAGC		58	18675785	18675803	CTCATACATGAGTCCGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Acp36DE	FBgn0011559	FBtr0081054	3	1	1	98	2L	18358879	18358897	GGACATTCTTAGTCCTCCG		59	18358740	18358817	ATCACTTGTGAAGACTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	beat-Ic	FBgn0028644	FBtr0080801	2	1	1	94	2L	16034701	16037146	TAATGGTATTGTGGTGCCA		58	16037203	16037222	AATGTATGGCACTTGTAACC		58	NA	
Drosophila melanogaster	50	Adh	FBgn0000055	FBtr0100594,FBtr0100591,FBtr0100589	3	3	5	100	2L	14616350	14616368	TTTGACCAACAAGAACGTG		58	14616432	14616515	GGATCACCAGGTTCTTCAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG16884	FBgn0028544	FBtr0080557	3	1	1	96	2L	13946039	13947098	GAAAGTATTCATCTGCTTAGCC		59	13945964	13945982	CTTGTCCAGCTTCTTCTCC		59	NA	
Drosophila melanogaster	50	CG5787	FBgn0032454	FBtr0080405	3	1	1	165	2L	12709472	12709490	TTACCAATTCCAAGTCCAC		57	12709260	12709278	ATAGAGGGAAAGACAGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31864	FBgn0051864	FBtr0080288	2	1	1	119	2L	11996125	11996144	ATCTGACCAATTTCTACGGA		58	11996226	11996244	ATCATTGCAGTCCAATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31757	FBgn0051757	FBtr0080321	2	1	1	141	2L	11835098	11835116	AGATGCTCTTAACAAAGCG		58	11830831	11833279	CCTTGATTCGTCTATGAAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	sala	FBgn0003313	FBtr0080237	2	1	1	86	2L	11486211	11486300	TGAAACTACTGATTGCTCTG		57	11486349	11486367	CTCCATATCCTCCTTGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lectin-33A	FBgn0040096	FBtr0113317	1	1	1	60	2L	11002522	11002540	GAGGATTGTGTTGGATTCG		58	11002562	11002582	TGCACTCTATATCGTGATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5343	FBgn0032248	FBtr0080044	3	1	1	69	2L	10430377	10430451	CTTCGAGGTTCAGGTTCTC		59	10430326	10430344	TGTCGACTGGTAGTTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13138	FBgn0032211	FBtr0080066,FBtr0080067	2	2	2	60	2L	10300312	10300332	CCATTCTCCATACCATTTCAG		58	10300272	10300292	GTATAGGACTTTGAAAGGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4901	FBgn0032194	FBtr0079947	2	1	1	78	2L	10212203	10212221	AAGATTACATCCACACCGT		58	10212263	10212344	AATATCAACACGTCGTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9483	FBgn0032072	FBtr0079738	3	1	1	60	2L	8866963	8866981	GGACTTAGTGTGATCCTGG		59	8867003	8867023	GGGTGTAACCTATAATGATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pes	FBgn0031969	FBtr0079553,FBtr0114550,FBtr0079552	3	3	3	119	2L	7988318	7988403	CCGGGTATTACCTTGTATGAG		59	7988219	7988237	GACAATTAGCGGAACAAGC		59	NA	
Drosophila melanogaster	50	CG6441	FBgn0031920	FBtr0079451,FBtr0079450	3	2	2	152	2L	7476342	7476360	AAATTTACCAGCCATCTGG		57	7476609	7476628	GATTAGACATGGCAATCCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31630	FBgn0051630	FBtr0079400	1	1	1	60	2L	7047204	7047225	GACGAACAAAGGTAAGAATGAG		59	7047246	7047264	GAAGACTCGGAACCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cort	FBgn0000351	FBtr0079320	3	1	1	81	2L	6675691	6675767	CTATCCAGTTCTGGACCTC		58	6675628	6675646	CATGGACTTGAAGAACAGC		58	NA	
Drosophila melanogaster	50	Tig	FBgn0011722	FBtr0079275	3	1	1	67	2L	6422300	6422318	GAAATTCAACGTCCTCTCG		58	6421943	6422269	AAATAGAAGCACTCCAGGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG9140	FBgn0031771	FBtr0079216	3	1	1	81	2L	6061112	6061195	CATGACTCGATTTGTTAAGGG		59	6061051	6061070	GTGTCCCTCAATTTGTTTGG		59	NA	
Drosophila melanogaster	50	dsf	FBgn0015381	FBtr0079145	3	1	1	73	2L	5928131	5928149	TATGGAATCTACAGCTGCG		59	5928243	5928261	CAGGTGTAAATCCGATTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14010	FBgn0031725	FBtr0079116	2	1	1	159	2L	5609887	5609905	TATACTCACATGACTGCCG		58	5606158	5608799	ATGCTCATAACCTCCTCTC		58	NA	
Drosophila melanogaster	50	Sr-CIII	FBgn0020376	FBtr0077466	2	1	1	143	2L	4121187	4121268	CAGAAATATCTGCACCAAACTC		59	4121372	4121390	CCAATGTCTCCATGGAGAG		59	NA	
Drosophila melanogaster	50	CG3921	FBgn0031571	FBtr0077496	1	1	1	80	2L	3796816	3796834	CGTCGAACAACCTATTCCA		59	3796878	3796958	GCAAAGATACCTGAAAGCC		58	NA	
Drosophila melanogaster	50	sec5	FBgn0031537	FBtr0077519	3	1	1	106	2L	3458109	3458127	GATACGCTGATGAACATCC		58	3458196	3458269	GATTCGCTAATGGAGTTCTC		58	NA	
Drosophila melanogaster	50	CG17262	FBgn0031499	FBtr0077666	2	1	1	85	2L	3039325	3039344	TTGCTAAAGGTCCATCTGAG		59	3039195	3039278	GAAATAAGGCAGTACAACCC		58	NA	
Drosophila melanogaster	50	CG3165	FBgn0031484	FBtr0077642	2	1	1	75	2L	2977472	2977490	ATTGAATGTGCTCTTCCAG		57	2977529	2977603	CAAGTAGTTGCTCAGACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NTPase	FBgn0024947	FBtr0077680,FBtr0077683,FBtr0077681	3	3	4	143	2L	2882504	2882702	CTTTGTCTTTGGCTTCGTC		59	2882379	2882397	CGATTGAACTTGTAGGCCA		59	NA	Nonspecific
Drosophila melanogaster	50	CG15400	FBgn0031463	FBtr0113017	2	1	1	173	2L	2814951	2814969	GGGAATTAGGTCTCTTTGC		57	2814746	2814814	CATTTAAATGCCTCTCGCA		58	NA	
Drosophila melanogaster	50	CG17301	FBgn0031442	FBtr0077697	3	1	1	82	2L	2653234	2653303	GACGAGGTCAGAAAGACTC		59	2653349	2653367	GAGAACTTCAGGCAGTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18317	FBgn0031359	FBtr0077910	3	1	1	73	2L	1718715	1718735	GCTAAGCACAACGATATTACG		59	1718479	1718680	AAATGGCCATGATCCTACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	cpb	FBgn0011570	FBtr0077881	3	1	1	61	2L	1705705	1705723	CTTCGATCAGTACAGGGAG		58	1705748	1705766	GATCCCATAGGTAGACGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5561	FBgn0031333	FBtr0077947	1	1	1	61	2L	1353828	1353895	TGTCTTTGATACTCGCCAC		59	1353785	1353803	TATCGTAACAACGGACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12506	FBgn0031276	FBtr0078003	2	1	1	68	2L	773847	773865	AACAGTACCACAACTTCGA		58	773897	773915	CGAAGAGGAAACCTCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2807	FBgn0031266	FBtr0078068	1	1	1	128	2L	568433	568617	GATATCGAGGCACAGATCAG		59	568708	568726	ATCATCGTCGTACAAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	U2af38	FBgn0017457	FBtr0078133	2	1	1	73	2L	294108	294126	AATCGAGGAGATGAACGTG		59	294053	294074	CGTTACGGAATTTGATGTACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32506	FBgn0052506	FBtr0077309	3	1	1	81	X	20335194	20335212	AATATGGATGCCCTACAGC		59	20335257	20335830	GGAGTTCGCTACTGTAGAC		59	NA	
Drosophila melanogaster	50	D2R	FBgn0053517	FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461	3	4	5	81	X	19905587	19920745	ACTTTCTGGTAAATGGAGC		57	19905524	19905544	GAAGTAGAGCATATCACATCC		57	NA	
Drosophila melanogaster	50	D2R	FBgn0053517	FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461	3	4	5	81	X	19905587	19920745	ACTTTCTGGTAAATGGAGC		57	19905524	19905544	GAAGTAGAGCATATCACATCC		57	NA	
Drosophila melanogaster	50	Arpc3B	FBgn0065032	FBtr0113478,FBtr0074410	3	2	2	62	X	16999561	16999579	CATCATCGATGAGTCACTC		57	16999517	16999535	TTAACTTCGTAAGTGCGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Axs	FBgn0000152	FBtr0074372,FBtr0100417	3	2	2	81	X	16576145	16576242	CACGATATCCTGTATCTCGA		58	16576083	16576101	CAAAGTAGTTCCGGATGTC		57	NA	
Drosophila melanogaster	50	CG2186	FBgn0030243	FBtr0073381	2	1	1	232	X	10752389	10752407	ATGAGTTGCTACTCTCGGA		59	10752668	10752686	AGATGAAGCTAGCTCTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	flw	FBgn0000711	FBtr0071446,FBtr0071447	3	2	2	80	X	10301263	10301281	ATTACTGTGGAGAGTTCGA		57	10301324	10301408	GTTTCAGGATCTGGAATGAG		57	NA	
Drosophila melanogaster	50	otu	FBgn0003023	FBtr0071236	3	1	3	147	X	8381021	8381624	GACTATAACTTTAAGGTCCCG		57	8380894	8380912	ATTTGGAAGACTTGTTGGC		58	NA	
Drosophila melanogaster	50	MAPk-Ak2	FBgn0013987	FBtr0070837,FBtr0070838,FBtr0070839	1	3	3	94	X	5654849	5655215	TAGACTACGATCAGATGCA		57	5654773	5654792	GTATAACTCCATCTCCTCGA		57	NA	
Drosophila melanogaster	50	mRpL30	FBgn0029718	FBtr0070682	2	1	1	64	X	4542275	4542294	CTAAAGGGCAATCCCTACTG		59	4542321	4542339	CTCTGCTTTCCGTCTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	3	13	13	81	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567131	2567221	CTGTATTGAGAGCTCATGCT		59	NA	
Drosophila melanogaster	50	CG41234	FBgn0085564	FBtr0114007	2	1	1	126	U	383171	383189	GTTCTGGTAGAGTTCGGAC		59	380484	380502	GCTATAGTCACCGATCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Syt7	FBgn0039900	FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475	2	5	6	155	4	323148	325656	TAGTTATAGTCTTCGGGCTG		58	323012	323033	CCAATCAAAGGAGTTCTAAGAC		58	NA	
Drosophila melanogaster	50	CG34433	FBgn0085462	FBtr0112734	3	1	1	60	3R	26476157	26476175	GATCTTCCACTACCTTCGT		58	26476199	26476217	CAGGTAGAGTATTCCGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14531	FBgn0040619	FBtr0085312	2	1	1	70	3R	24632875	24632893	ACAGGACATGTTATGAACG		57	24632980	24632998	GTATCCAGAATGAGCTTCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Sce	FBgn0003330	FBtr0085245	3	1	1	113	3R	23507120	23507138	GTAATGGAAATGGTGCTGC		59	23507025	23507043	TATCATTGGAGGCTGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL27	FBgn0039359	FBtr0084932	1	1	1	60	3R	21509985	21510005	AGCCTGAACTACAATCATCTG		59	21509945	21509963	TCTCAAAGCTGATGTCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17141	FBgn0039020	FBtr0084322	2	1	1	60	3R	18572546	18572564	TAAGGATGATGAAATGGGC		57	18572504	18572522	CACAATATGATCGGGAAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cad89D	FBgn0038439	FBtr0083306	2	1	1	80	3R	12316386	12316404	ACTCATCACCAATCTCACC		58	12316240	12316345	TTGATCTCTTCTATGACAGGTC		59	NA	
Drosophila melanogaster	50	RpS5b	FBgn0038277	FBtr0083006	2	1	1	124	3R	10727103	10727121	GATGTCGTTACCACAATGC		59	10726997	10727015	TTTACGGCAATGTAGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	flfl	FBgn0024555	FBtr0114604,FBtr0082817	1	2	2	160	3R	9513945	9514076	AGATATGTCAGGTGCAAGG		59	9514200	9514218	TATCGTTTCCGAGATGTCC		58	NA	
Drosophila melanogaster	50	mRpS21	FBgn0044511	FBtr0082764	2	1	1	117	3R	9207344	9207362	CTGTTAAATCGCGTCTTGG		59	9207186	9207204	AAATGGCCTTGCATTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6234	FBgn0038071	FBtr0082648	2	1	1	81	3R	8476859	8476936	CATGAAATTAAGCTTGCGGT		59	8476977	8476998	CTTCATCGATTGTCTTTGACTC		59	NA	
Drosophila melanogaster	50	dpr15	FBgn0037993	FBtr0082549	1	1	1	89	3R	7969207	7969225	TAGTCAAACTGGATTCCGG		58	7965844	7969154	AATATTCACCGTTCAGCAC		58	NA	
Drosophila melanogaster	50	pug	FBgn0020385	FBtr0100144,FBtr0082266,FBtr0082264,FBtr0082265	2	4	4	151	3R	6525678	6525696	TAAGGATTGTCCAGGTTGG		58	6525808	6525952	CAGATCGTTTATCTTATCGAGC		58	NA	
Drosophila melanogaster	50	PpD3	FBgn0005777	FBtr0082129,FBtr0082128	3	2	2	85	3R	5575740	5575758	GAGGTTAAGGATATGGGCT		58	5575804	5575881	CCCATAGTATCACAATAGTTCG		58	NA	
Drosophila melanogaster	50	CG31284	FBgn0051284	FBtr0081754,FBtr0081755,FBtr0081753	1	3	3	117	3R	3720343	3723577	CAAATAACCGCTTCAAATCG		58	3723657	3723675	CCACACTCCATGTATTCGA		59	NA	
Drosophila melanogaster	50	CG18268	FBgn0037520	FBtr0081772	3	1	1	107	3R	3628932	3629012	GTTAATATGGCTCTTAGCCAG		58	3628845	3628863	TTCACAATGTTTGCTCAGC		59	NA	
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078818	2	1	15	119	3R	1121454	1121473	AGACGATGAAGACAAGAAGG		59	1120593	1121372	AAACAATAGCGGTCTTTGC		59	NA	
Drosophila melanogaster	50	5-HT2	FBgn0013743	FBtr0078854,FBtr0078855	3	2	3	224	3R	453861	453880	TTAGTTTCCGTAATGTCGTG		57	454067	455864	AATGTATGGCCAGTCTGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Taf6	FBgn0010417	FBtr0074941	3	1	1	110	3L	19593327	19593345	TGCAAGAACTTCAATACCC		57	19593476	19593494	AATAGAGCCGTAAAGCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14098	FBgn0036884	FBtr0074936	1	1	2	80	3L	19539055	19539243	CATTGTACAGGTTCATCTGTG		58	19539284	19539303	CGATGATTATTTGTCCCGTG		59	NA	
Drosophila melanogaster	50	CG11905	FBgn0036678	FBtr0075303,FBtr0075302,FBtr0075306	1	3	10	121	3L	16928316	16928334	ACTATTCACCAGAACCTCG		58	16926099	16926398	CTGCTTCTGAATTTCGACG		59	NA	InUTR
Drosophila melanogaster	50	CG13029	FBgn0036670	FBtr0075336	2	1	2	170	3L	16854332	16854351	GTTGGCCACACTAATTACAG		58	16854539	16854560	GCTCATTGGTTTGAGAAATAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17028	FBgn0036552	FBtr0075515	3	1	1	113	3L	15972436	15972455	CCTAATCGTGGTGTCTAAGG		59	15972591	15972609	ATATAGCAGAGCGTGAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13466	FBgn0036456	FBtr0075619	1	1	1	126	3L	14934893	14934911	GAGCAACCGCTACTATAGC		59	14935001	14935140	CGAGATGCAGGGATATCTG		59	NA	
Drosophila melanogaster	50	CG7906	FBgn0036417	FBtr0075741	2	1	1	248	3L	14230849	14230867	CAACCAAGTTCATCGAAGG		58	14231078	14231159	AACATTCTTGGTGTTGAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	nmo	FBgn0011817	FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758	1	6	6	141	3L	8040250	8040352	GTCTTCGATCCGGATAAGC		59	8040457	8040475	AATCAGCCGTATACTGACG		59	NA	
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713	3	5	8	188	3L	5692112	5697030	GTTCCTTCGCAAGATTTCG		59	5698070	5698091	CGTAGTAACCATTTCTTTACCG		59	NA	
Drosophila melanogaster	50	CG17746	FBgn0035425	FBtr0073094,FBtr0073093	3	2	2	160	3L	3238653	3238671	CACAAGTACGTTCTCAAGC		58	3237972	3237990	AGCTTGTTGTCCTTTACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13891	FBgn0035139	FBtr0072566	3	1	1	73	3L	433310	433329	AATAAGCATAACGTCGTCCA		59	433256	433274	GATCGGATTCCACCTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34140	FBgn0083976	FBtr0110975	3	1	1	85	3L	183692	183766	CTTTCTGCAATCTTCTAGCT		57	183626	183644	TGAAAGTTCGAAAGTCGTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG16896	FBgn0035073	FBtr0072423	2	1	1	150	2R	20759351	20759370	AATTCGTAACCAGGAGATGG		59	20759157	20759238	TTCCATGGTCATATCACGC		59	NA	
Drosophila melanogaster	50	CG13594	FBgn0035041	FBtr0072336	3	1	1	63	2R	20503718	20508238	TCACGTAAATCCAGGTGAC		59	20503673	20503691	GACTCCTACTCCTGATTGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG13567	FBgn0034963	FBtr0072189	1	1	2	152	2R	19924623	19924641	CCCACTGAGTTTATTCACC		57	19924429	19924509	GAATAGTTCCCTAACGTTCAC		58	NA	
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	2	8	8	98	2R	14032393	14032483	CAAGGAAAGAATTCTGAGAAGC		59	14032542	14032560	AATCATCGGATACAGACGC		59	NA	
Drosophila melanogaster	50	CG34318	FBgn0085347	FBtr0112518,FBtr0112517	3	2	2	96	2R	11354265	11354358	AGATTGTCATACAGACCGG		58	11354418	11354436	TCCTGCAGATACTTGATGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG7639	FBgn0033989	FBtr0087423,FBtr0087424	1	2	2	80	2R	10876490	10876508	GGCCAATGATCTACAACTG		58	10876367	10876446	CTGAAAGACATTTCAGGCC		58	NA	
Drosophila melanogaster	50	CG34185	FBgn0085214	FBtr0112378	2	1	1	131	2R	10261454	10261531	CTGGATGAACTTGCTAGCT		59	10261341	10261360	TCAGTTAAAGAGTACGTCCC		58	NA	
Drosophila melanogaster	50	CG6357	FBgn0033875	FBtr0087638	1	1	1	92	2R	9728467	9728543	GGAGAAGTTCCTGATTGAC		57	9728599	9728617	ATCGACTTAAAGTTGTCGC		58	NA	
Drosophila melanogaster	50	CG8776	FBgn0033764	FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869	1	5	5	104	2R	8548250	8548271	CATAAGGTCAACTTCTATAGCC		58	8548111	8548185	CAGCATTACCAGAAAGCTG		58	NA	
Drosophila melanogaster	50	Fpps	FBgn0025373	FBtr0088170	1	1	1	90	2R	7193594	7193672	CTTGGCTGGCTATAAAGAC		57	7193522	7193541	GAAATCATCTTGAACCTGGA		57	NA	
Drosophila melanogaster	50	CG30033	FBgn0050033	FBtr0088117	3	1	1	102	2R	7180097	7180115	GATCATCACTCCGTCACTG		59	7180239	7180258	AAATATTGGACCCACTACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	1	26	26	80	2R	6421013	6421095	AGTCCCTACTTTGCTACCT		59	6420951	6420970	CTCTTGGTACTTGACATCCT		58	NA	
Drosophila melanogaster	50	CG12126	FBgn0033280	FBtr0088801	2	1	1	79	2R	4150517	4150535	AAGAAGTCTCATCCAACCG		59	4150456	4150474	AAACTGATCAAAGGCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12159	FBgn0033232	FBtr0088889	1	1	2	165	2R	3803412	3803430	TGCTGCTTATTATGAGGGT		58	3802674	3802904	TAAACCTGAACCAACTCGA		58	NA	
Drosophila melanogaster	50	CG3409	FBgn0033095	FBtr0086140	2	1	1	81	2R	2589421	2589903	GAGGAGGAAGATACCTGGT		59	2589358	2589378	ACTTCATGTCCAGAAAGAGTG		59	NA	
Drosophila melanogaster	50	CG14590	FBgn0033061	FBtr0086022	3	1	1	61	2R	1967076	1967094	ATCTTCGACTAACGAAGCA		58	1967033	1967052	ATATTCCGTTGGATCGAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1962	FBgn0032876	FBtr0081399,FBtr0081400,FBtr0081401	2	3	3	60	2L	20680493	20680512	TAGTGGTGCGGATTATAAGG		58	20680452	20680470	GCTAGAGTTGGGATTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41072	FBgn0069951	FBtr0100401	3	1	1	119	2L	20257854	20257872	TCATACAGACGCTAAAGCC		59	20259505	20259523	CTTCTCTGACACTCTAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5343	FBgn0032248	FBtr0080044	3	1	1	65	2L	10430580	10430598	CAACGACATACAAAGCCTC		58	10430533	10430551	CATGTTATGAACGTGGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pten	FBgn0026379	FBtr0089905,FBtr0089902,FBtr0089901,FBtr0089903,FBtr0089900,FBtr0089904	2	6	6	86	2L	10258782	10258800	TCAGCGTCGATATGTTCAG		59	10258643	10258735	CGTATTTCACATACGTTAAGGC		59	NA	
Drosophila melanogaster	50	CG13398	FBgn0032042	FBtr0079710	3	1	1	60	2L	8414663	8414683	GACGTTATGGGTTGAATAACG		59	8414623	8414641	CCAGACATACACCTACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11147	FBgn0031734	FBtr0079165,FBtr0079166	3	2	2	84	2L	5735356	5735374	GTAATGGAGGATGGCATCC		59	5735238	5735310	CTTGTTGATCCGTCATATCGA		59	NA	
Drosophila melanogaster	50	CG14030	FBgn0031696	FBtr0079069	1	1	1	110	2L	5281977	5282079	CATATGTGATCAGGTGCTG		57	5282153	5282171	AACTCGGTGGCTATTAGAC		58	NA	
Drosophila melanogaster	50	Eno	FBgn0000579	FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905	2	4	5	84	2L	1727657	1727676	TTAAATTTGTGCAGATCCGC		59	1726602	1726620	GAGTCGTAGATTTGACGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2543	FBgn0030407	FBtr0073655	3	1	1	92	X	12508805	12508823	GATTACATCTGGACGGAGC		59	12508877	12508963	TCTTTGGATTGACACTGTCTC		59	NA	
Drosophila melanogaster	50	CG10352	FBgn0030348	FBtr0073599	2	1	1	91	X	11770089	11770107	TTTCCAGCTACAGAATCCG		59	11769954	11770036	CTCCAGGTCCTATGATTTCAC		59	NA	
Drosophila melanogaster	50	CG12470	FBgn0040371	FBtr0070069	2	1	1	60	X	202671	202690	TCTTCGATAATATGCACGAC		57	202713	202731	TATAGACGCGTCTTTCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Surf6	FBgn0038746	FBtr0083854	2	1	1	60	3R	15730386	15730404	TCTATCAGCGAGTCTTGGA		59	15730290	15730363	TCTTCTTGTTTGGAGTAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083209,FBtr0083210,FBtr0083205,FBtr0083204	3	8	8	81	3R	11780334	11780353	CACTTTGGATCCTTCTTGTC		58	11780394	11780478	CGAGAATGGTATTATCCTTGAC		58	NA	
Drosophila melanogaster	50	sqd	FBgn0086897	FBtr0082854,FBtr0082857,FBtr0082856,FBtr0082855	3	4	4	252	3R	9468818	9468901	AACGACTGAGAAGGAACTC		58	9468584	9468602	CTCATCGCTGATCTCTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Timp	FBgn0025879	FBtr0082245,FBtr0082244	1	2	2	92	3R	6030548	6030566	TACAAGGAGTACACCAGGA		59	6030416	6030492	AAAGCAGGGAGTTACTGTG		59	NA	
Drosophila melanogaster	50	dpr11	FBgn0053202	FBtr0081704	2	1	1	120	3R	2358447	2358465	TTCATCATGTGGTACCACG		59	2357761	2358363	TTAATGAGCCAATCGTGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4925	FBgn0036614	FBtr0075428	3	1	1	134	3L	16343301	16343405	CGTACTCAGAACACAATAAACG		59	16343188	16343206	AATTGTGAGTAGCTCCTGC		59	NA	
Drosophila melanogaster	50	CG1308	FBgn0035507	FBtr0073221	1	1	1	81	3L	4198924	4199006	CTGCAATAAGGTTTATTAGCGG		59	4199048	4199066	TGATCGTACAATCGAAGCA		59	NA	
Drosophila melanogaster	50	CG12084	FBgn0043458	FBtr0072711	2	1	1	88	3L	1492937	1492955	CAATCTACCTGCTGAACAC		58	1492799	1492886	GAACATGGTACTAACTACGC		58	NA	
Drosophila melanogaster	50	CG13512	FBgn0034760	FBtr0071864	2	1	2	87	2R	18548328	18548347	ATCAACTTACTGTATGGCGG		59	18548604	18548622	CTTGTAGCAACAGTTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9406	FBgn0034592	FBtr0071570	3	1	1	108	2R	17030280	17030350	GGATCGACAAATGGAACCA		59	17030419	17030440	CATTAATTTGCCGAAGTACTCC		59	NA	
Drosophila melanogaster	50	Cpr49Af	FBgn0033729	FBtr0087921	2	1	1	60	2R	8293758	8293776	CGGTCAATGGAAAGTACTC		57	8293800	8293818	GTGTAGGACACAACATAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Corin	FBgn0033192	FBtr0088909,FBtr0088908	3	2	2	88	2R	3446442	3446460	GTCAAGGTCCACAGATTCC		59	3446512	3446587	ATCCAAGTCCGTTTGAGTC		59	NA	
Drosophila melanogaster	50	CG2611	FBgn0032871	FBtr0081387	2	1	1	69	2L	20650646	20650664	GCTACTATGTGTACGTGCT		59	20650697	20650715	CTTCGTATCTCGTCCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13966	FBgn0032838	FBtr0081304	2	1	1	123	2L	19970557	19970575	CATCTCCTACACCATCGAC		59	19970173	19970191	TTGTACTTGACGTCCTTGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG10338	FBgn0032700	FBtr0081096	3	1	1	85	2L	18697684	18697705	TCAGCTTAAGGAGAAATACTGG		59	18697751	18697838	GATGGATTAGCCAACCCTC		59	NA	
Drosophila melanogaster	50	CG15143	FBgn0032647	FBtr0080993	3	1	1	84	2L	17523938	17524018	GACGCTTTACAGAGAATCCT		59	17523873	17523891	CAGTTCCAAGGTTTCAACG		59	NA	
Drosophila melanogaster	50	CG4440	FBgn0040984	FBtr0080835	1	1	1	79	2L	16329964	16329982	ACTCTTACTCCAGTATCGC		58	16330084	16330102	AAACAGAGCAATCAGACAG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG17104	FBgn0040496	FBtr0080105	1	1	1	80	2L	10678789	10678908	CATTGAGGAAACTACAGAACTG		58	10678949	10678967	GTTTCAGTGGTCTCCTCAG		59	NA	
Drosophila melanogaster	50	CG31873	FBgn0032206	FBtr0079986	2	1	1	79	2L	10270370	10270388	CAACAAGAAGAGATCGGAG		57	10270485	10270503	GGATCTCCACCGAATATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13392	FBgn0032033	FBtr0079720	2	1	1	145	2L	8382517	8382601	AAATAGGCGAAGTATGGTCG		59	8382391	8382409	GACAATCGGGAGGTAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7227	FBgn0031970	FBtr0079551	2	1	1	107	2L	7995686	7995770	GCAATATGGCAAATGGTACTG		59	7995599	7995617	TTCCATACCAACAGGAGGA		59	NA	
Drosophila melanogaster	50	Uch	FBgn0010288	FBtr0077844	2	1	1	83	2L	2213548	2213624	AGCGAAACCTATGAGAAGC		59	2213483	2213501	GTAGAAGAGATCCTCGGGA		59	NA	
Drosophila melanogaster	50	CG4764	FBgn0031310	FBtr0077960	3	1	1	89	2L	1150925	1150943	ATTTAAGAAGCTGCTGGTG		58	1150996	1151014	GACTTCAGGTAGTCGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4577	FBgn0031306	FBtr0077957	3	1	1	135	2L	1139062	1139136	GAAGAGTGAGTAGCTCGAG		58	1139235	1139253	TCATCCACGTTGTAGTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	drongo	FBgn0020304	FBtr0078035,FBtr0078036,FBtr0078037	1	3	3	193	2L	835454	835472	GATATGCCGCTCTTAAGGA		58	835217	835235	GAATGGATTCACCACATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	mt:tRNA:T	FBgn0013707	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR31215	FBgn0051215	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR31631	FBgn0051631	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:M	FBgn0044508	FBtr0070292	1	1	1	70	X	1376595	1376613	TTTCAACTTCACTGCTGAC		58	1376543	1376562	TGTATCTATCAGAGACTGGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	roX2	FBgn0019660	FBtr0073514,FBtr0073515	2	2	2	73	X	11473817	11473835	TAACGATTTCCGCATAGTC		57	11473870	11473890	CCAAATAGTCGTACTCATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41353	FBgn0083995	FBtr0111193	2	1	1	85	X	22367404	22367422	TTCCGTAGCTACGATTTGG		59	22381921	22381941	ACCAATGTAATATCTCCTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40486	FBgn0069972	FBtr0111188,FBtr0111187	2	2	2	72	X	22361363	22361381	CTCATTAACAGCCTAACGG		57	22361309	22361327	GATACATGTTGAGCACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DIP1	FBgn0024807	FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370	2	4	4	170	X	21497272	21497350	TTCTTTGCATTATGCGTCC		58	21497120	21497138	GAGAGTTGCACACTTTCAC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14476	FBgn0027588	FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058	3	5	5	96	X	21473853	21474022	AATCTATGGTCATGGAGCG		59	21473775	21473793	TACAACATTGGTCTCCGAC		59	NA	
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089400,FBtr0089403,FBtr0089409,FBtr0089408	1	4	13	153	X	20101663	20103201	TGAATTCACAGGAGACGAC		59	20101528	20101548	TTCAGTCTCCTTCTTGATCTC		58	NA	
Drosophila melanogaster	50	CoRest	FBgn0053525	FBtr0091480,FBtr0091482,FBtr0091481	2	3	5	172	X	19418033	19418051	AATCCATAGCCAGTTTGGT		58	19418187	19419220	GGCGATTATCTTGTCATCG		58	NA	
Drosophila melanogaster	50	gfA	FBgn0086778	FBtr0074679,FBtr0074680	2	2	3	103	X	19235952	19235970	TTTCAATCTGATTGTGCCG		58	19234611	19235885	GAATTGTAACTCCAAGCGA		57	NA	
Drosophila melanogaster	50	CG7280	FBgn0030966	FBtr0074655	3	1	1	60	X	18740986	18741004	CAGAACGACTATAAGGGCT		58	18740944	18740962	ATTTGCTGAAGTCTACCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6769	FBgn0030878	FBtr0074493	1	1	1	81	X	17756221	17756314	TTATCCGGACAATAATGAGGG		59	17756357	17756375	CACCAGCTGATACTCATCG		59	NA	
Drosophila melanogaster	50	CG8316	FBgn0030852	FBtr0074485	3	1	1	214	X	17525159	17525230	CGAATTGAAGGAAGAGTTGC		59	17524964	17524985	CCAGCTTCTTAGTAGTGATCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	l(1)G0222	FBgn0028343	FBtr0074490,FBtr0074489,FBtr0074488	3	3	3	114	X	17468998	17469093	AGCCCAAGGAAATCATCTG		59	17468902	17468922	TTTGACTGGGATCTTAGTACG		59	NA	
Drosophila melanogaster	50	baz	FBgn0000163	FBtr0111000	3	1	2	94	X	17086985	17087004	TCAGAACGACATCTTCAACC		59	17087061	17087356	AATCGCCTCCACTAATCTG		59	NA	
Drosophila melanogaster	50	CG9906	FBgn0030755	FBtr0074299	1	1	1	60	X	16419150	16419168	GGAGGATGTGCAGATAGAG		58	16419108	16419128	ACTCTTGTAGGCAAACTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hang	FBgn0026575	FBtr0074277,FBtr0074276	1	2	2	80	X	16328105	16328126	GTTTGACTCGAACGATTATTCC		59	16328164	16328307	TTATAGCGATGAACCCATAGAC		59	NA	
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	3	7	7	85	X	16270054	16270134	GAGAACGAGGTGAAATGGA		59	16270183	16270201	CTGTAGGTGGGTAAGTCCT		59	NA	
Drosophila melanogaster	50	CG8924	FBgn0030710	FBtr0074131,FBtr0074130	2	2	2	68	X	15837293	15837311	TGAATGTCCACCTATCCCT		59	15837402	15837420	AATCCAAGTATTGCTGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	2	9	9	111	X	15788791	15788877	GAGTTACCGAATATGGCGA		59	15788952	15788970	TTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	CG9240	FBgn0030669	FBtr0074060	2	1	1	60	X	15594658	15594676	TGATCAGGTGCTAATCCAG		58	15594616	15594637	ATCCGAATTACCACTAAACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0168	FBgn0027287	FBtr0074042,FBtr0074043	3	2	2	205	X	15403947	15403966	TAAGGTGGGACTCAATAAGC		59	15404195	15404213	ATGTCACTCCATCCATCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Lsd-2	FBgn0030608	FBtr0110969	1	1	3	86	X	14966818	14966838	GGGAACTCAACAAGTTTATGG		59	14966646	14966664	TGTGTAGGACTGGATCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fbxl4	FBgn0030555	FBtr0073923	1	1	1	101	X	14129765	14129783	ATAATCTAACCCACCTGCG		59	14129630	14129700	GCAGGCTCAACTCTATCAG		59	NA	
Drosophila melanogaster	50	CG32625	FBgn0052625	FBtr0073839	2	1	1	60	X	13650673	13650691	AAGAAATTTCCATCGGACG		58	13650631	13650650	TAGGGTACATATGGGTTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mus101	FBgn0002878	FBtr0073817	2	1	1	60	X	13618514	13618535	GGAATGACTATTGTCGTATCCA		59	13618554	13618574	CTGTCGCATTAATAAAGTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1640	FBgn0030478	FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769	2	6	6	83	X	13268114	13268132	ATTCAACCGTTAGACGTCC		59	13268315	13268334	TATGTTATCCAGTGTGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4407	FBgn0030431	FBtr0073696,FBtr0073695	1	2	2	220	X	12796462	12796480	CAGTTGGTTCAGTACGAGG		59	12795796	12795814	TTCAAGTGGATGTAGTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2577	FBgn0030384	FBtr0073643	1	1	1	60	X	12268185	12268204	TGAAGTTCCACAATACTCAG		57	12268226	12268245	TGTTTAGGTGGAAATACACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34144	FBgn0083980	FBtr0110988	1	1	1	209	X	11192010	11192028	ATTCCATTGTTGGAACGAC		58	11191351	11191369	ATAGTCGTATCGATCCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	2	8	9	95	X	10692568	10692661	CGAATAAGGGTGAAATTTGC		57	10692492	10692510	GCATGATCCGTTTAATGGT		58	NA	
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0110967	1	1	9	88	X	10692588	10692659	AATAAGGGTGAACTCTCCC		58	10692518	10692536	GACTTGCCAATGATTCGTC		59	NA	
Drosophila melanogaster	50	ras	FBgn0003204	FBtr0071494,FBtr0071495	1	2	3	100	X	10639925	10639943	CAGACAAAGAGTACCACCG		59	10640006	10640117	AGAAAGTCGTTGTAGGTGAG		59	NA	
Drosophila melanogaster	50	CG9817	FBgn0030219	FBtr0071509	2	1	1	83	X	10499358	10499376	GCATAATGCCACAGAACAG		59	10499195	10499214	CGTACTTGGAGTACATCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sp1	FBgn0020378	FBtr0071381,FBtr0112894,FBtr0071380	1	3	3	60	X	9648300	9648318	GAACATCCATTCGTGTCAC		58	9648342	9648360	CAGATGTGACGTCTTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0232	FBgn0028341	FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407	1	6	6	83	X	9524045	9524065	CCGTCGGATTATATTAATGCG		59	9523917	9524001	CTTTGGTAATGGACCTTGAG		58	NA	
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274	2	10	10	164	X	8768354	8768372	GGATGAGAACGAGAACGAG		59	8768131	8768227	TCTTGTTTCAGAGCCTTGAG		59	NA	
Drosophila melanogaster	50	RpS6	FBgn0004922	FBtr0071137,FBtr0071135	2	2	3	269	X	7794950	7794969	CTTCTACGAGAAGCGTATGG		59	7794187	7794205	TTCTTCAAGACGACCAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34337	FBgn0085366	FBtr0112539	3	1	1	64	X	7311451	7311469	CATGAGTGGAGCTACTACC		58	7311567	7311585	CATGAAGATCTTCAGGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9650	FBgn0029939	FBtr0112959,FBtr0112957	2	2	6	122	X	7126488	7126507	TAAGTTCATCCAGCACAAGG		59	7126591	7126955	ATTGTCGTTCTAAGGCTGAG		59	NA	
Drosophila melanogaster	50	CG12796	FBgn0029909	FBtr0070973	3	1	1	60	X	6726261	6726280	TTGACTCTGATCTCGATTGC		59	6726220	6726239	TATAGTGCAGAGCATAGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	3	8	8	60	X	6579593	6579674	GCCTTCAATGTGACTTCTC		58	6579697	6579716	GTGGATAACTGTCCACAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG16721	FBgn0029820	FBtr0070821	1	1	1	82	X	5775889	5775972	AGTTCCATGGAAATGTTGGT		59	5776017	5776035	AATGGTCTCATCATCGCTG		59	NA	Nonspecific
Drosophila melanogaster	50	cib	FBgn0026084	FBtr0070641,FBtr0070639	3	2	3	200	X	4004033	4004192	CGATAAGGAAGCCATCGAG		59	4004356	4004374	TCTCAGATCTCGGATCTCG		59	NA	InUTR
Drosophila melanogaster	50	CG2938	FBgn0029685	FBtr0070627	1	1	1	115	X	3829209	3829307	CAAGTACTCCCTCACTGAC		59	3829112	3829130	CAAATCGTTCGTAGAGCAG		58	NA	
Drosophila melanogaster	50	ec	FBgn0000542	FBtr0112801	2	1	3	77	X	3715030	3715048	TCTCAATTGTGCCGTACAG		59	3735397	3735415	CATACGTGCTGATTTAGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32793	FBgn0052793	FBtr0070550	1	1	1	60	X	2825786	2825806	CTCACTTATGGACATCTTCCA		59	2825828	2825846	AGATGATGAACCGGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3526	FBgn0040355	FBtr0070546,FBtr0113325	2	2	2	60	X	2787337	2787357	CAATAGGATGACCTTCTATCG		57	2787379	2787397	GGAGCAAAGATCATAGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL14	FBgn0040389	FBtr0070405	2	1	1	71	X	2238353	2238371	CCATGTCTACAACAAACGC		59	2238300	2238318	TTCATCTGTCCCTTGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or2a	FBgn0023523	FBtr0070397	2	1	1	60	X	2140795	2140815	GTGCTCATCAATATCTACCAG		57	2140837	2140855	TAGCGCAGTTCTGTATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4199	FBgn0025628	FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070337,FBtr0070333,FBtr0070335	2	6	6	60	X	1961216	1961235	TAAATCGTAACGGATCCGTG		59	1961175	1961193	TACACATCGGGTACATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Roc1a	FBgn0025638	FBtr0070122	2	1	1	106	X	541532	541550	GATAAGAAGCGCTTTGAGG		58	541769	541787	CACAAGTCCATGATGTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	mod(r)	FBgn0016038	FBtr0089725,FBtr0089726	3	2	4	111	X	516383	516478	CATATCAGGGAGCTTCTTCAG		59	516551	516569	ACGTGTTGAGGAAAGTCTG		59	NA	
Drosophila melanogaster	50	CG13365	FBgn0029529	FBtr0070160	2	1	1	112	X	514982	515000	AGTACTACGGCTACAAGAC		58	514888	514906	GTGGAATCCAGAGAACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40571	FBgn0085746	FBtr0114196	1	1	1	69	U	8365652	8365670	TAGCTGTTCTACGACAGAG		58	8365703	8365721	AACAATATGAGAGGTCGGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40583	FBgn0085498	FBtr0113908	3	1	1	60	U	4408824	4408845	TGGGATGTTTATATTCCTACGG		59	4408785	4408805	CAATTCCTCCATTATGACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41527	FBgn0085670	FBtr0114117	2	1	1	61	U	3398341	3398360	AGGAAACTCTGAAAGAAGTC		57	3398383	3398402	CCCATTTAGCCATAACATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41492	FBgn0085653	FBtr0114097	2	1	1	114	U	1628652	1632491	GGATGAAGAATACGAATTCCC		58	1632567	1632585	GATAAGCTGTTGCATGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arf102F	FBgn0013749	FBtr0089192	3	1	1	134	4	1145399	1145417	GGAGGATGAACTTAGGGAC		58	1145515	1145589	GACTGAATAAACCAGTGGC		58	NA	
Drosophila melanogaster	50	CG2118	FBgn0039877	FBtr0085855,FBtr0085856	2	2	2	94	3R	27617580	27617599	GATCAGGATCCATTTGTTGC		59	27617450	27617526	ACAGAATAGACCTTCTCATTGG		59	NA	
Drosophila melanogaster	50	ttk	FBgn0003870	FBtr0085828,FBtr0085826,FBtr0085827,FBtr0085825,FBtr0085830,FBtr0085829	2	6	6	127	3R	27553858	27553876	ACATGATGAACGACTCCTC		59	27553964	27554122	GCGACTTTCATTTAGATCATCC		59	NA	
Drosophila melanogaster	50	pasha	FBgn0039861	FBtr0085820	1	1	1	115	3R	27446120	27446138	TAACGGGCAACAATAAGGA		58	27446273	27446291	CTTGTTGCAGAATTCGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15536	FBgn0039766	FBtr0085628	1	1	1	60	3R	26250425	26250444	AGGGCGATATAGAAATCTGG		58	26250384	26250403	ATAGTTAGTAGGTCACCCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arp5	FBgn0039745	FBtr0085564,FBtr0085563	1	2	2	87	3R	25883386	25883404	TTTCCTGCTTCCAGAACAG		59	25883455	25883473	TACTTCTGGAAACAGTCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL32	FBgn0002626	FBtr0114556,FBtr0085592,FBtr0085593,FBtr0085594,FBtr0114555	3	5	5	61	3R	25871414	25871432	TCGGATCGATATGCTAAGC		59	25871309	25871327	ACTCTGTTGTCGATACCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	janA	FBgn0001280	FBtr0085595,FBtr0085597,FBtr0085596	1	3	3	84	3R	25864787	25864805	GAAGGTCTACGGATACTCG		58	25864615	25864633	GTAGTCCGGGTATTTGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Trc8	FBgn0039668	FBtr0085430,FBtr0085432,FBtr0085429	2	3	4	97	3R	25327494	25327512	TGTCCAACTTTGGACTGTC		59	25327201	25327434	TTGGATTAGTCTGATGGTCC		58	NA	
Drosophila melanogaster	50	CG1458	FBgn0062442	FBtr0085405	2	1	1	124	3R	25048300	25048318	GAGGATATTGCGGAGAAGG		59	25048130	25048148	TTGATGACAATTGGTCCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	2	7	8	82	3R	24639657	24639675	TACTGCTACGGATATTGGC		58	24639721	24640880	CGCTCAAACACCTTATAGC		58	NA	
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085144,FBtr0085137,FBtr0085138,FBtr0085145,FBtr0085140,FBtr0085143,FBtr0085139	2	7	12	134	3R	22892191	22892337	ATCGGATACCTTTGTCTTCC		59	22892076	22892095	AAGTTTCTAAGGTGTTGGCT		59	NA	
Drosophila melanogaster	50	CG14253	FBgn0039467	FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074	1	5	5	81	3R	22809875	22809893	GTATGCCTATGGAAGGCAG		59	22809935	22810014	CGGTAACTTAAAGATTTGGCTC		59	NA	
Drosophila melanogaster	50	CG14253	FBgn0039467	FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074	1	5	5	81	3R	22809875	22809893	GTATGCCTATGGAAGGCAG		59	22809935	22810014	CGGTAACTTAAAGATTTGGCTC		59	NA	
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100338,FBtr0100334,FBtr0085092	3	3	9	134	3R	22699712	22699802	AACAGCTACCCATATACGG		58	22699596	22699614	ATATTTGCTGTTGGCACTG		58	NA	Nonspecific
Drosophila melanogaster	50	scrib	FBgn0026178	FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085019	1	5	7	88	3R	22406737	22415640	AACTACAGTCAACACCTGC		59	22415691	22415710	TTTAGGCACTTTAGTCGGAG		59	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625	2	8	17	92	3R	20521093	20521111	GGACATTAAGGACGAGACG		59	20521837	20528752	GTGATATCACCTAAGTCATCGA		59	NA	
Drosophila melanogaster	50	CG13614	FBgn0039194	FBtr0084614,FBtr0084615	3	2	2	109	3R	20196249	20196328	GTGTTTACACTACCAACCG		58	20196400	20196419	AAGTTTAGCTTACACGAGTC		57	NA	
Drosophila melanogaster	50	Pros26.4	FBgn0015282	FBtr0084520	1	1	1	60	3R	19756092	19756111	CGCTACGATTCAAATTCTGG		59	19756051	19756072	TCAGTAACTCCAACATAGTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4393	FBgn0039075	FBtr0084430	2	1	1	81	3R	19204907	19204926	TGCAGGATTACTTCATCTGG		59	19204779	19204865	CTCCTCAAAGACATTGTTCAC		59	NA	
Drosophila melanogaster	50	CG4467	FBgn0039064	FBtr0084390,FBtr0110801	1	2	2	80	3R	19057612	19057630	CTTTCCAGTCACCTATGTG		57	19057481	19057569	ACATTGAAGGTTACATCCAC		57	NA	
Drosophila melanogaster	50	unk	FBgn0004395	FBtr0084403,FBtr0084402	2	2	2	143	3R	18981726	18981807	ATACAAGTACAGGTCCACTC		58	18981602	18981620	GTCGACTTGTAGATCTCCG		59	NA	
Drosophila melanogaster	50	CG17141	FBgn0039020	FBtr0084322	1	1	1	60	3R	18572546	18572565	TTAAGGATGATGAAATGGGC		57	18572505	18572523	ACAATATGATCGGGAAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-50	FBgn0024832	FBtr0084252,FBtr0084253	1	2	2	60	3R	18288987	18289008	GTAATGAAGTCGTATTTGTCGG		59	18289085	18289103	CGATCTTGTCGTTAATCCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31353	FBgn0051353	FBtr0084191	3	1	1	76	3R	17804587	17804605	CACTATTTGTTGGCTAGGC		58	17804529	17804547	CAGCTAAAGTAGAGCCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	glec	FBgn0015229	FBtr0084157	2	1	1	60	3R	17681506	17681524	GACTCGAATATCGATCAGC		57	17681464	17681484	CCTTAACGTATAATCTCTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CheB93b	FBgn0051438	FBtr0084090	3	1	1	129	3R	17235337	17235415	ATTACAACTCCGGGAACAG		59	17235508	17235526	CACCAGATTTGTCGAATGC		59	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	3	22	22	87	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202451	17202547	TTGTTCAGGAATACGATAGC		57	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084077	3	1	22	83	3R	17200835	17200853	AACAGTCCCAGAACTACAG		58	17177597	17200788	AATGTGAGGTACCTTGAGC		59	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	2	22	22	85	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202453	17202548	GTTCAGGAATACGATAGCG		57	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	3	22	22	84	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202454	17202549	TTCAGGAATACGATAGCGT		58	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0110937,FBtr0112915	3	12	12	137	3R	17037304	17037479	GATGTGATTAATCTCGCCG		58	17037580	17037598	TTCCATGATCGTGTAGAGC		59	NA	
Drosophila melanogaster	50	slmb	FBgn0023423	FBtr0084032	3	1	1	84	3R	16946807	16946826	ATCAAGGTTTGGGATTTGGT		59	16946682	16946760	CAGTATGTTCCACAAGGGT		59	NA	
Drosophila melanogaster	50	Atpalpha	FBgn0002921	FBtr0089515,FBtr0089514,FBtr0089509,FBtr0089512	3	4	8	91	3R	16786471	16786489	TCTTAGAACGAGGGAAACC		58	16786544	16789461	CATCTTGCGTCTTGATGTG		59	NA	InUTR
Drosophila melanogaster	50	CG7432	FBgn0038727	FBtr0083785	2	1	1	82	3R	15496151	15496169	GATATGATTCCCACTGGGT		58	15496213	15496294	AGTATAGACACCTGGATATCC		57	NA	
Drosophila melanogaster	50	Dl	FBgn0000463	FBtr0083740,FBtr0083739	1	2	2	206	3R	15134476	15137548	CTGTCACATACCCAAATGC		58	15132171	15132189	TAGTTCAGATCCTGGTTGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG7709	FBgn0038642	FBtr0083687	2	1	1	165	3R	14518347	14518365	TGGTGGCTTTGTCTTTAGG		59	14516620	14516638	GTTGATGAGCTTCGAATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14327	FBgn0038526	FBtr0083465	2	1	1	93	3R	13440411	13440429	GATACGGTGGAGGATATGG		58	13440485	13440504	TAACTGGATCCTTCACTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cher	FBgn0014141	FBtr0089473,FBtr0089472,FBtr0089474,FBtr0089471	2	4	4	117	3R	12920031	12920106	AAGGCTGACATCAACTACC		59	12919932	12919951	ATCCCTTGATGTGCTTATCG		59	NA	
Drosophila melanogaster	50	CG31217	FBgn0051217	FBtr0083353	1	1	1	130	3R	12479547	12479632	AATGCGTGAAATACTGCAG		58	12479435	12479453	GACAAACTTCACTTCGGTG		58	NA	
Drosophila melanogaster	50	Fas1	FBgn0000634	FBtr0083333	2	1	4	111	3R	12460096	12461277	TCGTTCAAGGAGAATGCTG		59	12461351	12461370	AAATGGTCACTTCTGTCAGG		59	NA	
Drosophila melanogaster	50	CG17931	FBgn0038421	FBtr0083322	1	1	2	144	3R	12184507	12185226	AATTTGTCATGGTAAGCGG		58	12184310	12184328	TTCTCCCGCATTAACTCAG		59	NA	
Drosophila melanogaster	50	CG31287	FBgn0051287	FBtr0083256	3	1	1	137	3R	12029545	12029563	CCACATATCAGGATTTGCT		57	12029663	12029739	GCTTGGTTACCAAATTTACG		57	NA	
Drosophila melanogaster	50	pnr	FBgn0003117	FBtr0083220,FBtr0083221	3	2	2	130	3R	11865150	11865168	CATTCAGACCAGGAAACGA		59	11865262	11865348	AGGGTTTGAGATCATGCTC		59	NA	
Drosophila melanogaster	50	Atx2	FBgn0041188	FBtr0083101,FBtr0083099,FBtr0083100	3	3	3	151	3R	11239224	11239300	ATTATGCATGGGTCTTCTCAG		59	11239413	11239431	TAGTTCAGTGACGAGTTGC		59	NA	
Drosophila melanogaster	50	CG6654	FBgn0038301	FBtr0083139	1	1	1	101	3R	11038057	11038075	ATACGCTGTGATTCCAAGG		59	11037919	11037995	CATGGTGAATACTTTCTGACAG		59	NA	
Drosophila melanogaster	50	CG6904	FBgn0038293	FBtr0083037,FBtr0083035,FBtr0083036	1	3	3	95	3R	10968575	10968688	TGGGCATTTACTACAGACAG		59	10968499	10968520	AGTTGTTCTTCGATCCATAGAG		59	NA	
Drosophila melanogaster	50	CG7530	FBgn0038256	FBtr0083020,FBtr0083021,FBtr0083019	1	3	3	103	3R	10551833	10551851	TTCAACCCGTACATTCGTC		59	10551639	10551767	CTCCAGATGTTGATCGTCTC		59	NA	
Drosophila melanogaster	50	CG14851	FBgn0038240	FBtr0082956	1	1	1	96	3R	10388099	10388117	ATCATCTTCGCCATTCTCG		59	10388177	10388195	AGTTGATGCATCCAGTGAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Abi	FBgn0020510	FBtr0112896,FBtr0082910	3	2	2	101	3R	9946188	9946430	CGCAATATCAACAGGAATCAC		59	9946107	9946125	GTCTTGATGCTCATCCTCC		59	NA	
Drosophila melanogaster	50	rdx	FBgn0086364	FBtr0082872,FBtr0082871,FBtr0082874,FBtr0100852,FBtr0100361	2	5	5	91	3R	9796061	9796079	AAATCAGAAGTCAGAGCCA		58	9795915	9796006	AAACGATAAGCTCTTTGGG		57	NA	
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082803,FBtr0082807	1	2	8	149	3R	9488074	9488092	GACGATCGATATGGTGGTC		59	9488770	9489191	AAAGCACATCAAACTCTGC		58	NA	
Drosophila melanogaster	50	CG34308	FBgn0085337	FBtr0112504	3	1	1	61	3R	8915072	8915090	TAAGGACAAACGAAACCCA		59	8915115	8915133	TCCAGGAATCCTCTTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10013	FBgn0038012	FBtr0082567	3	1	1	60	3R	8150289	8150311	CTGATATAGACTTACCCATGGAG		59	8150331	8150349	ACATTCATGTCCACATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17404	FBgn0038001	FBtr0082622	2	1	1	61	3R	8050297	8050315	ATCAGGAACTGGTTACCAG		58	8050254	8050272	ATTTAACTTCAGCGGAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4830	FBgn0037996	FBtr0082625	1	1	1	90	3R	8035668	8035686	ACCTACATTATGCCCACAG		59	8035484	8035616	GCTTAAGAGTAGATTCCTCGA		58	NA	
Drosophila melanogaster	50	CG18347	FBgn0037969	FBtr0082484	3	1	1	114	3R	7796689	7796766	TGTATCACTAAGACACTGAAGC		59	7796839	7796859	CCAGATAGTAGACCGTTTGAG		59	NA	
Drosophila melanogaster	50	Fdh	FBgn0011768	FBtr0082290	1	1	1	67	3R	6697135	6697153	AAGAAGTTCGGATTCACCG		59	6697086	6697104	TAGTTCTGGATCGAACCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cap-H2	FBgn0037831	FBtr0082271	2	1	4	156	3R	6589658	6589836	ATTCAAATGCATACAGCAGG		58	6589952	6589973	TGATAAGATCAGCATCCATCTC		59	NA	
Drosophila melanogaster	50	CG14683	FBgn0037822	FBtr0100412,FBtr0082267	1	2	2	60	3R	6524092	6524111	TGTTGGCTAATGTTGAAGAG		58	6524133	6524152	TTCTCTTCACCATACATCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34304	FBgn0085333	FBtr0112500	1	1	1	170	3R	6484506	6484524	AAACATGCTGCCAAATGTC		59	6484842	6484860	TTGGGTGACATACACATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12817	FBgn0037798	FBtr0082243,FBtr0110952	1	2	3	96	3R	6049940	6049960	GCCATGCATCATAACTATGAC		59	6049756	6049885	CAATTGCCTCTATAAAGTGCTC		59	NA	
Drosophila melanogaster	50	CG12814	FBgn0037796	FBtr0082182,FBtr0110786	2	2	2	80	3R	5998356	5998374	TCTTCCTGATCATGTTGCT		58	5998141	5998314	TCTCGATGATCTCTGTATTGG		58	NA	
Drosophila melanogaster	50	Fmr1	FBgn0028734	FBtr0082200,FBtr0082198,FBtr0082197,FBtr0082199	3	4	5	95	3R	5930072	5930090	GAATGGCAGGGACTATCAG		59	5929454	5930013	GATGAGTTACTGTCCGCTC		59	NA	
Drosophila melanogaster	50	CG8534	FBgn0037761	FBtr0082143	3	1	1	60	3R	5639419	5639438	TACTGGCATGTTCATTTCCA		59	5639459	5639479	GTTGTGAATGTAGAAGTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32937	FBgn0052937	FBtr0082089	3	1	1	60	3R	5552475	5552496	TGCTGATAATCCTCTAGATTCC		58	5552436	5552454	GGGAAGACAACCAATTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33654	FBgn0053654	FBtr0091633	3	1	1	76	3R	5408714	5408734	CGGAGCTATAAGTACTTAACG		57	5408566	5408584	AACATGAAGGGTCTGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16733	FBgn0037665	FBtr0081974	1	1	1	60	3R	5077595	5077616	GCAGCTAATTTATCGTGAACTC		59	5077637	5077655	CGGAAAGACTGCATTAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ctr1B	FBgn0062412	FBtr0081835	2	1	1	97	3R	4144501	4144519	GATGCTGATCTTCATGACC		57	4144580	4144598	GATTCTTCTTGTTCCAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ccp84Ac	FBgn0004781	FBtr0081693	1	1	1	133	3R	2521633	2521651	AAGTACAACTTCGCCTACG		59	2521518	2521536	TTTACAGTACGACGGAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rm62	FBgn0003261	FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653	2	6	6	155	3R	1829622	1829746	GAGGAGAAATTGAAGACCCT		59	1829486	1829504	CTTGTCACCGTGAATAGCT		59	NA	
Drosophila melanogaster	50	exba	FBgn0037346	FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745	3	7	7	85	3R	1423978	1423999	GGTTCTATTATTCGTAAAGGGC		58	1423648	1423932	CAGAACCGTTGACTAACCA		59	NA	
Drosophila melanogaster	50	CG2663	FBgn0037323	FBtr0078795,FBtr0078796	2	2	2	257	3R	1227160	1227241	TACTGGACTATGTGCACTG		58	1226921	1226939	TCAGGAACTTCTTCACCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Cdep	FBgn0051536	FBtr0110958	3	1	2	81	3R	749541	751276	ACTTCCAAAGGTCTCAGTC		58	751319	751339	CTGGAATTCACATACGTATGC		59	NA	
Drosophila melanogaster	50	CG34425	FBgn0085454	FBtr0112726	2	1	1	60	3R	331575	331593	AATTCTGGAGAACCAACGG		59	331533	331552	CTCCAGCCAATAGTTATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32205	FBgn0052205	FBtr0075000	1	1	1	163	3L	19416416	19416489	TGTTTAAATCCGACGTCCT		58	19416271	19416289	TAACCTGATAACTGGCAGC		59	NA	
Drosophila melanogaster	50	mRpS5	FBgn0044510	FBtr0111146,FBtr0111144,FBtr0111147,FBtr0111145	3	4	4	61	3L	24530644	24530665	GCTTGTTATCTTCACATGAACC		59	24530685	24530705	GAAGCTGGTATTACGTAAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11109	FBgn0037200	FBtr0078552,FBtr0078553	2	2	2	61	3L	22866469	22866488	AACAGGTTAAGGTCTTGTCC		59	22866512	22866530	CACTGCCTGTTCAAATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33771	FBgn0053771	FBtr0091772	2	1	1	60	3L	22642788	22642808	GAACTTTCAGTCCATGTTCAG		59	22642830	22642848	TTTGACACTGGATGTTACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33290	FBgn0053290	FBtr0078370	2	1	1	60	3L	21535903	21535922	CTGGGTGAATAGATTGAAGC		58	21535944	21535963	ATAGTTCACAAGCCAGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3634	FBgn0037026	FBtr0078272	3	1	1	61	3L	20801962	20801980	TTGAGTGGTGGTATTTCCG		59	20801854	20801872	GTGGTTGATAGAGACTTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7646	FBgn0036926	FBtr0074901	3	1	2	198	3L	19986372	19986393	GCCTCAGTAGGTAAATAATGCT		59	19988600	19988747	CTAGCATGTCATAAATTGCCTG		59	NA	InUTR
Drosophila melanogaster	50	CG8533	FBgn0036907	FBtr0074877,FBtr0114601,FBtr0074878,FBtr0074876	1	4	4	169	3L	19794992	19795010	CATCTTCGACTACAAGCCT		59	19795205	19795274	ATGGTTCAGATGTGTCCAC		59	NA	
Drosophila melanogaster	50	nes	FBgn0026630	FBtr0075021,FBtr0075020,FBtr0075019	1	3	3	72	3L	19251666	19251684	ACATGACATTCCTCATGGA		58	19251439	19251457	ACCACTTTGGTGTAGAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(3)neo26	FBgn0036815	FBtr0075057,FBtr0075056	3	2	2	70	3L	18814990	18815008	TTCAGCCGATTCCAAAGAG		59	18815039	18815060	GGTTCCCATCAAGTAAATATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6893	FBgn0036807	FBtr0114373	2	1	1	63	3L	18687655	18687673	CTTCAAATCTCCAACAGGC		58	18687877	18687898	GCACTTAATCCATCGTATAGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nedd4	FBgn0036736	FBtr0075177,FBtr0075178	2	2	4	86	3L	17535992	17536011	TTGATGTGGATCATCGTCAG		59	17536060	17536620	GATCGGTGTCTTCATTCGA		59	NA	
Drosophila melanogaster	50	CG13733	FBgn0036729	FBtr0075225	3	1	1	60	3L	17471355	17471373	TATCATGGCAAGTCTCCAG		58	17471313	17471332	GTTGTGAATCTTCTGATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	blot	FBgn0027660	FBtr0075235,FBtr0075233,FBtr0075234,FBtr0075232	3	4	4	131	3L	17391426	17391508	GTTGTAATGCTGTGCACAC		59	17391313	17391332	GAAGTAGTGACGACTGAAGG		59	NA	
Drosophila melanogaster	50	CG6512	FBgn0036702	FBtr0075251,FBtr0075252	3	2	2	82	3L	17233768	17233786	CAATGAGATTGGTGTGGGT		59	17233650	17233669	TCAGGAAGTTAACGAACTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fit2	FBgn0036688	FBtr0075275	3	1	1	60	3L	17019337	17019355	AAGTGGACAGCATACTCTC		58	17019379	17019397	TTTACATGAACTCCGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9951	FBgn0036671	FBtr0075337	1	1	1	60	3L	16857592	16857612	GCAGGATACATGAATTCATCG		59	16857631	16857652	AGAACTTTGTAGATATCCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Abl	FBgn0000017	FBtr0112790	1	1	2	166	3L	16622298	16624486	ATGAACTTAGAAGCCCTGC		59	16622150	16622168	GTAGTCGAACTGTGACCAC		59	NA	
Drosophila melanogaster	50	CG4729	FBgn0036623	FBtr0075417,FBtr0075419,FBtr0075418	2	3	4	82	3L	16377075	16377094	TATCAAGCCCATAGACAAGC		59	16376952	16377031	ACACGAAGATAAGTTGGGAG		59	NA	
Drosophila melanogaster	50	CG32160	FBgn0052160	FBtr0075367	2	1	1	60	3L	16303366	16303384	AACTGTACCTTCAATGGTG		57	16303408	16303426	TGACAAATCACCATAACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf4	FBgn0010280	FBtr0075449,FBtr0075448	1	2	5	93	3L	16109259	16109277	CCAGCAATAACAGCAACAC		59	16109334	16110655	TTGGTCATAGAAGCTGCAG		59	NA	
Drosophila melanogaster	50	CG5284	FBgn0036566	FBtr0075444,FBtr0075445	1	2	2	81	3L	16087581	16087599	TATCCGTTCCTAGACAGCA		59	16087644	16087720	AAGTTTCATTCCGCTTTGG		58	NA	
Drosophila melanogaster	50	CG5626	FBgn0036266	FBtr0076016	2	1	1	111	3L	12198561	12198638	CCTACTAGAAGTTGGACGT		57	12198468	12198486	GTAGTTGGTGTACCTTTCG		57	NA	
Drosophila melanogaster	50	obst-G	FBgn0036228	FBtr0076066	1	1	1	60	3L	11946096	11946114	CGATGATCCTGACAATGTG		58	11946054	11946075	CGTGTCGTCAACAATATTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32065	FBgn0052065	FBtr0076284	3	1	1	300	3L	10438608	10438626	GAGCTGAGAAGTGAAACCA		59	10440552	10440573	AGTCTGAATCTAAATCGGAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32056	FBgn0052056	FBtr0076303,FBtr0076301,FBtr0076302	3	3	3	86	3L	10214550	10214568	TTCTTCGGCATCAATTTCC		58	10214221	10214501	GAACATGGCATCTATGAGGA		59	NA	
Drosophila melanogaster	50	alphaTub67C	FBgn0004236	FBtr0076393	2	1	1	61	3L	9675930	9675948	AACATGATGGTCAAGTGTG		57	9675973	9675991	CTGTAAAGCATGCAACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pall	FBgn0036005	FBtr0076471	2	1	1	89	3L	9480579	9480597	AGATCATTATGGCCCATGC		59	9480439	9480527	GGGATAGAATGTGGTTCCTG		59	NA	
Drosophila melanogaster	50	CG4022	FBgn0035986	FBtr0076486	3	1	1	67	3L	9402283	9402372	AATTAGTCAGAAACGCCGT		59	9402234	9402252	ATTCCAGACATCCTTCAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Hsp67Bc	FBgn0001229	FBtr0076497	1	1	1	60	3L	9364906	9364924	GCATCATACCCATTAAGCA		57	9364864	9364883	TTATGACCGTTTCCATTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp66E	FBgn0035936	FBtr0076507,FBtr0076508,FBtr0076506	3	3	3	85	3L	8919887	8921127	GCATTGAGCAATTTACACAG		58	8921175	8921193	GCTCATGAAGAACATGACG		58	NA	
Drosophila melanogaster	50	CG13310	FBgn0035928	FBtr0076590	2	1	1	122	3L	8792240	8792258	GATTGGTTGCATTCGATCG		59	8792053	8792154	CGAACACTTGATTGCACTG		59	NA	
Drosophila melanogaster	50	CG5989	FBgn0017429	FBtr0076649	2	1	1	80	3L	8596066	8596084	GCTCATCGATGTCAAAGAC		58	8595943	8596022	ACTAGGTTTCTAACGTGCT		58	NA	
Drosophila melanogaster	50	CG32373	FBgn0052373	FBtr0076806,FBtr0076805	2	2	2	87	3L	7750857	7750940	CTGTAATGATATCGACGAGTG		58	7750988	7751007	ACAGGTGCATATGAATTCAC		58	NA	
Drosophila melanogaster	50	CG32373	FBgn0052373	FBtr0076806,FBtr0076805	3	2	2	88	3L	7750856	7750938	GCTGTAATGATATCGACGAG		58	7750988	7751007	ACAGGTGCATATGAATTCAC		58	NA	
Drosophila melanogaster	50	SMSr	FBgn0052380	FBtr0076870,FBtr0076871	2	2	2	109	3L	7368206	7368288	AATAACAGGGCTCTCATGC		59	7368115	7368134	GTATCGTATTCATTGGGCAC		58	NA	
Drosophila melanogaster	50	CG8616	FBgn0035752	FBtr0076834	2	1	1	165	3L	7233026	7233044	AAACTTCACAGAACTCGTG		57	7233229	7233249	GCTCCAGTAGTTAATAATCGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14829	FBgn0035751	FBtr0076893	3	1	1	63	3L	7230906	7230924	ATATCCCTGGGACAAATGG		58	7230861	7230879	CAAGCTCCTGATCTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18769	FBgn0042185	FBtr0076973,FBtr0076975,FBtr0076970,FBtr0076974,FBtr0076972,FBtr0076971	1	6	6	103	3L	6584090	6584167	TATTGCTCAGCTCTACGAG		58	6584234	6584252	GTGGTTCTAGTTCATAGCG		57	NA	
Drosophila melanogaster	50	CG18769	FBgn0042185	FBtr0076973,FBtr0076975,FBtr0076970,FBtr0076974,FBtr0076972,FBtr0076971	1	6	6	103	3L	6584090	6584167	TATTGCTCAGCTCTACGAG		58	6584234	6584252	GTGGTTCTAGTTCATAGCG		57	NA	
Drosophila melanogaster	50	Trn	FBgn0024921	FBtr0077002,FBtr0077000,FBtr0077001	2	3	3	117	3L	6187881	6187899	GTCATCAGATGAGGACCAC		59	6187977	6188081	CAGCATGTACTCAATAATCTGC		59	NA	
Drosophila melanogaster	50	CG10274	FBgn0035690	FBtr0113149,FBtr0077018	1	2	2	60	3L	6173394	6173412	AACCACATTAAGATCGTGC		58	6173352	6173371	TCTTTCCACAGTATTGACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32415	FBgn0052415	FBtr0077111	2	1	1	60	3L	5797539	5797558	ACGGACGAAATCCTAATGAG		59	5797581	5797599	GAAGGACACAAGTTGACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13285	FBgn0035611	FBtr0077141	2	1	1	129	3L	5528360	5528545	CGGCCAAGTTGTTAAATCTC		59	5528250	5528268	GGATAGTATCCCGATGAGC		58	NA	
Drosophila melanogaster	50	CG32245	FBgn0052245	FBtr0073311	3	1	3	81	3L	4564538	4577926	TACGTAGACTTGATACACAAGC		59	4578775	4578793	CATGTTGATGCCTTATCGC		59	NA	
Drosophila melanogaster	50	CG11353	FBgn0035557	FBtr0073309,FBtr0073308	3	2	2	101	3L	4538172	4538263	CTATGTGAAATATCCCAAGGTG		58	4538324	4538343	AATTGGAACTTGATGCTCAG		58	NA	
Drosophila melanogaster	50	CG32240	FBgn0052240	FBtr0073336	2	1	1	172	3L	4381222	4381240	AAGAACTGAATCAGTGCGA		59	4381005	4381024	TGTGTTCTATAAAGGGTCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14985	FBgn0035482	FBtr0073191	2	1	1	110	3L	4004264	4004282	GATCAAGGGTGACTTGGAG		59	4004527	4004548	CGCCCAATCTTAATTATGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	enc	FBgn0004875	FBtr0073153	3	1	4	229	3L	3832329	3832348	GTATCACTATGAGCCCAGAG		59	3832540	3832616	CTGATTGATGAAAGACGCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32264	FBgn0052264	FBtr0113431,FBtr0113430,FBtr0073188	1	3	5	97	3L	3718987	3722173	CAATAACTATTCGCTCAACAGG		59	3718911	3718929	TTTCGCGTATCACAAATGG		58	NA	
Drosophila melanogaster	50	CG12010	FBgn0035443	FBtr0073074,FBtr0073075	3	2	2	60	3L	3375553	3375571	TCAGGGATATGTGATAGCG		58	3375595	3375613	TAAGAGTTGCTGTTGAACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14968	FBgn0035431	FBtr0073087,FBtr0073089,FBtr0073088,FBtr0073086	2	4	5	70	3L	3300765	3300783	CAGTAGTACCACCGATCTG		58	3300038	3300731	TGTACTTCACCTTGAACGT		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	RpL28	FBgn0035422	FBtr0073097,FBtr0073095,FBtr0073096,FBtr0073098	1	4	4	87	3L	3221935	3221954	CAATTGGTTGATCATTCGCA		59	3221695	3221885	CAAGTTGTTTGGCTCTGTG		59	NA	Nonspecific
Drosophila melanogaster	50	rasp	FBgn0024194	FBtr0073029	2	1	1	60	3L	3162532	3162551	GCTCTTAGTGTAAACCTGGA		59	3162574	3162592	AGCTGGCTATCAATGTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1244	FBgn0035357	FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933	2	6	6	90	3L	2640506	2640585	TCTGTGGAAGGATGTACCA		59	2640639	2640657	CACTTGTAGGACAGGTGAG		59	NA	
Drosophila melanogaster	50	CG1887	FBgn0035290	FBtr0113125,FBtr0072859,FBtr0113124	1	3	3	60	3L	1894438	1894613	ATACAACCGAAACTTGGAG		57	1894396	1894417	CTTTAAGATTCAGCTGTATCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	n-syb	FBgn0013342	FBtr0072815,FBtr0072817,FBtr0072816,FBtr0072819	2	4	5	299	3L	1635310	1635328	GAGGAAATTCTGGCTTCAG		58	1632235	1632253	TCGAGAAACTTTCGTCCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12004	FBgn0035236	FBtr0072746,FBtr0113122,FBtr0072745	3	3	3	142	3L	1573250	1573268	TCATCTGCATCGAAATGCT		59	1573608	1573688	CATTGTTTCCTTAAGACTGCTG		59	NA	
Drosophila melanogaster	50	5SrRNA:CR33450	FBgn0053450	FBtr0086442	1	1	1	62	2R	15617904	15617922	AATACATCGGTTCTCGTCC		59	15617860	15617878	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	zip	FBgn0005634	FBtr0072398,FBtr0072399	3	2	4	101	2R	20885211	20885809	GTGCTCATTAACTTCTCGG		58	20885128	20885149	CATCTTCAATCCATTGACTACC		58	NA	
Drosophila melanogaster	50	Ance-5	FBgn0035076	FBtr0072420	1	1	1	143	2R	20776461	20776479	ATGTCATGGAGATAGCCAC		58	20776276	20776354	TTCGACACAATTCATCTGC		58	NA	
Drosophila melanogaster	50	Cpr60D	FBgn0050163	FBtr0072334	1	1	1	60	2R	20550674	20550692	CTTCTGAAGTCGGAGAACC		59	20550632	20550650	TGATCTCATGCTGGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16786	FBgn0034974	FBtr0072248,FBtr0072247	1	2	2	92	2R	19971025	19971043	AACTGTCTATGGCTTCCTG		58	19971096	19971184	GATTTAAGTTCAAAGGCTGGAG		59	NA	
Drosophila melanogaster	50	yki	FBgn0034970	FBtr0072183,FBtr0072184	3	2	3	156	2R	19953829	19954696	AAAGCAGAATGAATCTGGG		57	19953608	19953627	ATACCATTCCAAATCGTCAG		57	NA	
Drosophila melanogaster	50	sei	FBgn0003353	FBtr0072169,FBtr0072170	1	2	2	80	2R	19938358	19938376	GGTTCCTAATCGATCTCGT		58	19938419	19938498	TTAAGGTAGTTGTCTCGTCG		59	NA	
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	1	8	8	80	2R	19817553	19817571	GGATATCATGGAGAAGCCC		59	19817427	19817509	CCAATAGCCATGTAACGGA		59	NA	
Drosophila melanogaster	50	Upf3	FBgn0034923	FBtr0072221	2	1	2	136	2R	19780930	19781005	GGAATAAAGATCGACCATCG		58	19780813	19780831	CTTCGAAGTCTTCTCCTCC		59	NA	
Drosophila melanogaster	50	CG4019	FBgn0034885	FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103	2	4	4	214	2R	19495764	19495782	TCGAGTTCGTAATCACCTC		58	19495488	19495506	GTAGATCCAGTTGCTCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9861	FBgn0034844	FBtr0072002	2	1	1	148	2R	19212392	19212412	TACTGCATTCGATACTTACCG		59	19212575	19212665	CTGTGGAATCCGTCTTCTC		59	NA	
Drosophila melanogaster	50	CG30259	FBgn0050259	FBtr0113365	3	1	2	60	2R	18591476	18591494	GATATGTACGCCAATCTGC		58	18591434	18591452	TCGTACCAACTATCCTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bonsai	FBgn0026261	FBtr0071860	2	1	1	183	2R	18525696	18525714	GATGAGATGGTCAAGGAGG		59	18525918	18525938	AGTACTTGAGGAACTTCTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30281	FBgn0050281	FBtr0071760	1	1	1	80	2R	18002742	18002838	GCAGTCATGAGACAATTAACC		59	18002879	18002898	CCGGAACTTCAATAACATGG		58	NA	
Drosophila melanogaster	50	CG11073	FBgn0034693	FBtr0071797	1	1	1	60	2R	17981151	17981171	CCAACTATCATTACTGAAGCG		58	17981111	17981129	GATCCACAATACCCTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30386	FBgn0050386	FBtr0071598	1	1	1	64	2R	17187659	17187677	CACATCGGAGTTATGGGAC		59	17187705	17187723	AATGTTGATCACGAAACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bl	FBgn0015907	FBtr0086221,FBtr0086220	3	2	4	91	2R	16483146	16483164	TTCGCATACTGATTCCGAG		59	16483312	16485064	AGTGGCTTTATACTGAGTCC		58	NA	
Drosophila melanogaster	50	hts	FBgn0004873	FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086548	1	5	6	87	2R	15295689	15295707	TTCGATAACGTCACAGACG		59	15295552	15295639	TGTCGGTATATTCACCATGC		59	NA	
Drosophila melanogaster	50	CG5327	FBgn0034363	FBtr0086707	2	1	1	185	2R	14503766	14503784	AGAACTGCATCGAGAAGTG		59	14504012	14504030	AACTCTCAAACATGTGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4966	FBgn0034261	FBtr0086840,FBtr0086839	3	2	2	84	2R	13577311	13577388	TGATCTTGAGATCCAACGAC		59	13577435	13577453	ATCTGATGGGTAGGTTCCT		59	NA	
Drosophila melanogaster	50	RhoGAP54D	FBgn0034249	FBtr0086900,FBtr0086901	3	2	2	100	2R	13477349	13477420	GGAGAAGAATCTCACCCAG		59	13477267	13477285	AATTCAGTGGTTTGTCGTG		58	NA	
Drosophila melanogaster	50	ProsMA5	FBgn0016697	FBtr0086910	3	1	2	81	2R	13300523	13300541	AGCAATTGGAATTTGCACG		59	13300644	13300662	AGTACTGGGTACCATTAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12699	FBgn0046294	FBtr0086995	1	1	1	90	2R	13134398	13134416	AGAATCAGATGCAGAGGAC		58	13134326	13134344	TATATCCACACGGTTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS15	FBgn0034138	FBtr0087124,FBtr0087123	1	2	2	99	2R	12458179	12458197	CATGATCATCGTACCCGAG		59	12457857	12457875	GTAGTGACCGATCATCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Vha44	FBgn0020611	FBtr0087175,FBtr0087173,FBtr0087176,FBtr0087174	1	4	4	80	2R	12213561	12213649	CAGTGCTGATAACGTAGAC		57	12213499	12213518	ATGTTGACCTTGTAGAACAC		57	NA	
Drosophila melanogaster	50	Lis-1	FBgn0015754	FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240	2	6	6	64	2R	12070571	12070592	GCTCAAATGATCAGACAATACG		59	12070617	12070702	GCGTAATTCAACCTTGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Aats-cys	FBgn0027091	FBtr0087234	3	1	1	81	2R	12032151	12032172	GGAAGGATACTCTTGACTACTC		59	12032212	12032291	TTCAGGAAGAACTCATTGAGG		59	NA	
Drosophila melanogaster	50	Rho1	FBgn0014020	FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216	2	7	7	82	2R	11993293	11993373	CACAATTCGGGATCTAGCA		59	11993419	11993437	AGGCATTAATCTTCTCGGC		59	NA	
Drosophila melanogaster	50	CG8160	FBgn0034011	FBtr0087389	3	1	1	63	2R	11215172	11215190	AATCGGGCCAGTTATATGC		59	11215127	11215147	AATTCTCCCTGTACAAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp317a1	FBgn0033982	FBtr0087405	1	1	1	60	2R	10787458	10787476	GTATGACTGCCTGTACGAG		59	10787499	10787518	CATTAGGGTGCTATTGACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6220	FBgn0033865	FBtr0087650	2	1	1	60	2R	9580388	9580406	CAAGTACAATCGCTATGGC		58	9580346	9580364	ATTTATGCCGAACTCTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cnn	FBgn0013765	FBtr0087703	1	1	5	155	2R	9337763	9337781	TAATTGAGACCGTGACCAG		58	9332635	9333062	AACTGGCATATGAGTTCTCC		59	NA	
Drosophila melanogaster	50	CG17048	FBgn0033828	FBtr0087721	3	1	1	62	2R	9241680	9241698	ACAGAATCCAGAGAAGCTG		58	9241636	9241654	CTGTACAGTGCTAAACAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33182	FBgn0053182	FBtr0087770	2	1	1	100	2R	9074555	9074574	GTTACAAGAATTGCAACGCA		59	9074416	9074492	CTCCTGCGTGATCTTACTG		59	NA	
Drosophila melanogaster	50	nemy	FBgn0033765	FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875	1	6	6	192	2R	8558847	8559072	AAGCGGATGAGGAAATCTG		59	8558673	8558691	CTGTACGCTTATAGTCCCG		59	NA	InUTR
Drosophila melanogaster	50	CG33752	FBgn0053752	FBtr0091753	3	1	1	61	2R	8433236	8433256	AGTTTAGAGATCAACGGAGAG		58	8433278	8433297	TCCAATACTTCACACTTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13204	FBgn0033627	FBtr0088129,FBtr0088128	1	2	2	203	2R	7256174	7256192	TTTCCTAAAGCCCTTCCAG		59	7256417	7256435	TAGGTATTAACCGTGTGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	zetaTry	FBgn0011556	FBtr0088164	3	1	1	61	2R	7227223	7227241	CACGAAGGGTATTACTCGG		59	7227180	7227199	GGATCCACAAATAGAATGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	1	26	26	80	2R	6421013	6421095	AGTCCCTACTTTGCTACCT		59	6420951	6420970	CTCTTGGTACTTGACATCCT		58	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	2	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421092	TAGTAAGGTAGCAAAGTAGGG		58	NA	
Drosophila melanogaster	50	Cyp49a1	FBgn0033524	FBtr0088311,FBtr0088313	3	2	3	82	2R	6343083	6343101	TCCTTATTCGGAAGTACCG		58	6342946	6343040	TGTATGTTCCTATTAGTGGAGC		59	NA	
Drosophila melanogaster	50	CG2269	FBgn0033484	FBtr0088407,FBtr0088408,FBtr0088409	2	3	3	115	2R	5982473	5982561	GCTATCTATGTGGTGCCTC		59	5982640	5982658	GATCATCAGGATGGAACGG		59	NA	
Drosophila melanogaster	50	sut4	FBgn0028560	FBtr0089675,FBtr0089674	1	2	2	60	2R	5973577	5973596	TGCCACTATCATTTCGATCC		59	5973536	5973556	CACCAATAGGAGTATCTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TER94	FBgn0024923	FBtr0112905,FBtr0088391,FBtr0112906,FBtr0088392	2	4	4	102	2R	5880410	5880494	GACAGAACTTCAGATTCCC		57	5880560	5880578	CTGTAAAGATCATCGTCGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG18446	FBgn0033458	FBtr0088376	3	1	1	60	2R	5759991	5760009	GTAACCAACATACTTCGCT		57	5760033	5760051	CTTGTGAGAATTCCTTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rep2	FBgn0028408	FBtr0112930,FBtr0088597	2	2	2	145	2R	5184910	5184928	TTGTTCTGGAGTGTGATGG		59	5185037	5185785	TATAGCTGATATGGCAGCC		58	NA	
Drosophila melanogaster	50	CG8026	FBgn0033391	FBtr0088611,FBtr0088610	3	2	2	110	2R	5076504	5076583	GTACTTCATGTTCTACAACACC		59	5076415	5076433	GTGAGAATTCCCGACTCAG		59	NA	
Drosophila melanogaster	50	ltd	FBgn0002567	FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934	1	5	5	108	2R	5066192	5066210	GGATGAGTATGTGAGGGAG		58	5066041	5066123	GATGAGTATCTTATTCACGAGG		57	NA	
Drosophila melanogaster	50	Vang	FBgn0015838	FBtr0088566	3	1	1	60	2R	4992180	4992198	TTTAACCCTTACCTGGAGC		58	4992222	4992240	ATATCTTGTTTCGCTGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8083	FBgn0025709	FBtr0088560,FBtr0088562	2	2	3	149	2R	4967667	4967743	TGGATCATAAGGAGTTGGA		57	4967856	4967874	GCAGCAGTACATAAATCGA		57	NA	
Drosophila melanogaster	50	CG14744	FBgn0033324	FBtr0113056	3	1	1	114	2R	4595305	4595323	ACTTCAGCATCTCCATGTG		59	4595140	4595230	GTGAGGATAATAAACAGGTGGT		59	NA	
Drosophila melanogaster	50	coilin	FBgn0033265	FBtr0100668,FBtr0100667	2	2	2	101	2R	4013112	4013130	AACTAGTATCCGATTCCGA		57	4012970	4013048	TTTCTACTACTGGAATCGGT		57	NA	
Drosophila melanogaster	50	Hey	FBgn0027788	FBtr0088869	3	1	1	78	2R	3884715	3884733	ATCTCAAGAGTCTGCAGTC		58	3883914	3883933	ATGATATGGTAGTCCATGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11198	FBgn0033246	FBtr0088871,FBtr0113053,FBtr0088872	1	3	4	190	2R	3872609	3872627	AATGAGTCCAATGACACGG		59	3870501	3872392	GACATACTCGGCCTTAACC		59	NA	
Drosophila melanogaster	50	CG30497	FBgn0050497	FBtr0088932	3	1	3	155	2R	3629422	3665994	TATCCCATAATGCAGTGCG		59	3629285	3629303	GATCGATGACCCAGAACTG		59	NA	
Drosophila melanogaster	50	Orc1	FBgn0022772	FBtr0088959	3	1	1	141	2R	3410953	3410971	CTGGATATCTTGTGCAACC		58	3410767	3410848	AGGTGACTTTACCCATCAG		58	NA	
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995	2	9	9	157	2R	3355133	3355208	AGAAGTTGTCATCAGCTCG		59	3354994	3355012	GTAGTAGTTGGTCAGCACC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111052	3	1	60	99	2R	3236476	3242402	CAGTACCCTTCTTTAGATGGT		58	3236397	3236415	ATGAGAGTACCAGAGACCT		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111049,FBtr0111068	1	2	60	151	2R	3234633	3234651	TATTGTGGTGACCAAGACC		59	3219874	3234518	ATCTGGGAGGTACATTGAC		58	NA	
Drosophila melanogaster	50	CG12828	FBgn0033145	FBtr0112770	1	1	1	73	2R	3037040	3037058	ATACTGTCCCATTGTGTCG		59	3036985	3037003	TAGCAACCGTTGATAAAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CheB42b	FBgn0066293	FBtr0086192	2	1	1	101	2R	2831081	2831100	ACGACAAGAACCAGTATTGG		59	2830839	2831017	GTACCAGAACGGTATCAGG		59	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086205,FBtr0086195,FBtr0086202,FBtr0086199,FBtr0086200	1	5	11	130	2R	2764760	2764778	CAAGGCCTTCATTGAAGTC		58	2764161	2764179	AGTTAAATGGATGCTGGAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3271	FBgn0033088	FBtr0086118,FBtr0086119	1	2	2	99	2R	2561684	2561772	ATATTCGCAGTGACGAGTC		59	2561835	2561853	AATAGGCAAAGGCGTAGTC		59	NA	
Drosophila melanogaster	50	CG9410	FBgn0033086	FBtr0086115	3	1	3	194	2R	2556694	2556712	GGACGTCAGAATCCTATGG		59	2557032	2557050	TTGTGGTAATTGCTGACGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9410	FBgn0033086	FBtr0086117,FBtr0086115,FBtr0086116	2	3	3	61	2R	2557208	2557226	CGTCTGTTCAACTACCTCC		59	2557251	2557269	TTAGGTATGTCCTTGAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bub1	FBgn0025458	FBtr0086032	1	1	1	80	2R	1857495	1857676	CTAGTGAGCAAATGATTCCA		57	1857434	1857454	ACTCTGAGATGTATACACTGG		58	NA	
Drosophila melanogaster	50	CG17508	FBgn0039970	FBtr0086071	1	1	1	147	2R	1497754	1498710	GTATCAAGTGGCATAAACTTGG		59	1498815	1498836	ACGTGATACTTATTCTAGCAGG		59	NA	
Drosophila melanogaster	50	gus	FBgn0026238	FBtr0089753	2	1	6	138	2R	1009145	1009286	CATGTCTATGTATAAGGGTGGT		59	1009028	1009046	AAGACGTTCAAACTCCCTC		59	NA	
Drosophila melanogaster	50	CG40127	FBgn0058127	FBtr0111266	1	1	1	90	2R	75327	75346	CCTCATTGAGGACTTACCTC		59	75189	75276	GTAGGCATTCTGATTGTATGC		59	NA	
Drosophila melanogaster	50	snRNA:U5:34A	FBgn0003935	FBtr0080451	1	1	1	60	2L	13244869	13244888	GTCGAATAAATCTTTCGCCT		58	13244910	13244929	GACTCATTAGAGTGTTCCTC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His4:CG33871	FBgn0053871	FBtr0091875	1	1	1	60	2L	21529344	21529362	GAACGTAATTCGTGATGCC		59	21529302	21529320	GGCTGTAACTGTCTTCCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His2A:CG33838	FBgn0053838	FBtr0091842	1	1	1	60	2L	21493704	21493723	GAATTATTCCGCGTCATCTG		59	21493746	21493764	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9264	FBgn0032911	FBtr0081463,FBtr0081462	3	2	2	80	2L	21079113	21079301	GCATTATAGATCTCAGGAGGA		58	21079343	21079361	GGAACCAACTTATGGAAGC		58	NA	
Drosophila melanogaster	50	rtGEF	FBgn0015803	FBtr0081357,FBtr0112885,FBtr0081356,FBtr0112884	3	4	4	81	2L	20355990	20356089	ATACTGGATAAGTACAAGGACG		59	20356131	20356149	TCGTGAGCACAAGTAATCC		59	NA	
Drosophila melanogaster	50	CG10722	FBgn0032848	FBtr0081335,FBtr0081334	3	2	2	196	2L	20095929	20096010	GAACTTCAGCGTTACAACG		59	20096167	20096188	CACTATGTGTACACAATGTACC		58	NA	InUTR
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0100449,FBtr0081211	1	2	6	80	2L	19419922	19419940	TGTACGGAAAGATCGATCC		58	19410635	19419878	ATAGAGCATATCCTGGCAG		58	NA	
Drosophila melanogaster	50	Aats-asn	FBgn0086443	FBtr0081162	1	1	1	60	2L	19130767	19130785	TATATCTGGAGACCTGCCT		58	19130725	19130743	CGATAGCTCTGGGAAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Faf	FBgn0025608	FBtr0081126	3	1	1	80	2L	18706847	18706865	GCAGTTGTATTCAAGCTGC		59	18706728	18706803	GTGATAAACGTCAAGCACC		59	NA	Nonspecific
Drosophila melanogaster	50	CG15161	FBgn0032692	FBtr0081078	2	1	1	60	2L	18614732	18614752	ATAGAGAAGTGGATCACTGAG		58	18614692	18614710	GGACATCGTACATTGACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017	3	6	12	102	2L	17651479	17652674	TCTGATACTACTCGTCTTGGT		59	17651397	17651415	GTTGATGATATTCTCGCGC		59	NA	
Drosophila melanogaster	50	CG6412	FBgn0032646	FBtr0080994	1	1	1	153	2L	17500037	17500055	TTCGATGGAGATCTGTGGA		59	17499797	17499815	TAGCCTTAAAGCACAATGC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	trpgamma	FBgn0032593	FBtr0080946,FBtr0080945,FBtr0114470	2	3	3	80	2L	16666840	16666932	CGTATCAACTTATTTCGGAACG		59	16666781	16666801	CCTCCTCAAAGTAGCTTATCC		59	NA	
Drosophila melanogaster	50	CG31818	FBgn0051818	FBtr0080841	1	1	1	60	2L	16338324	16338342	CACCCAAAGTCTACTACGA		58	16338282	16338301	CTTGGCTTAGGATTTAGGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17329	FBgn0028896	FBtr0080827	2	1	1	86	2L	16291594	16291612	AAGACACTCAATCAGCGTC		59	16291662	16291680	ATGTATTCCGTTGTCCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4891	FBgn0028520	FBtr0080815	3	1	1	60	2L	16095379	16095397	CATCACTAACCGAGTCCTG		59	16095419	16095439	ATGGAGTTCCGAATATTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gli	FBgn0001987	FBtr0080769,FBtr0080765,FBtr0080768,FBtr0080767	2	4	5	83	2L	15760332	15760410	GGATTACAGAACCTACACGT		59	15760268	15760286	TTTCTGCCTGGATAGTTGG		59	NA	
Drosophila melanogaster	50	Rab14	FBgn0015791	FBtr0080627,FBtr0080628,FBtr0080626	2	3	3	82	2L	14357909	14357927	CTAATGTTTCTCGAAGCGA		57	14358041	14358059	TTCTGGTAAATCTTGCGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG16879	FBgn0028904	FBtr0080596	1	1	1	80	2L	14105301	14105319	CTACAATGTGCACATGGAG		58	14105363	14105480	GTTTCAGTGATAATGCGGT		58	NA	
Drosophila melanogaster	50	DnaJ-H	FBgn0032474	FBtr0080494,FBtr0080493	1	2	2	81	2L	13164329	13164347	TTACCTTCATGGGTCTCAG		58	13164154	13164172	TTCTTGTCGTCCCTTATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	sala	FBgn0003313	FBtr0080237	3	1	1	60	2L	11486577	11486596	GGAACTAATCCAGTTGAGTC		57	11486617	11486637	GATGTTCCGGATATTCATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	salr	FBgn0000287	FBtr0080235,FBtr0080236	1	2	2	119	2L	11372325	11372343	AACTTCAGTTCGAGTTCCG		59	11372424	11372533	CATATGGACCTTGAGATTCCC		59	NA	
Drosophila melanogaster	50	CG6700	FBgn0032305	FBtr0080187	1	1	1	80	2L	10839575	10839594	CACATGATTGAATGGTTCCT		58	10839451	10839535	GCTAATGTTAGGACGATAAGAC		58	NA	
Drosophila melanogaster	50	CG17107	FBgn0032281	FBtr0080107	3	1	1	274	2L	10682015	10682033	TTTCTAATCTTCGCCCTGG		59	10682271	10682289	TTTCGAGCCTATCCATGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Sps2	FBgn0032224	FBtr0079998,FBtr0079997	3	2	2	140	2L	10343347	10343422	ATAATACTACCGTCAAACGC		57	10343524	10343543	ATCACTACATTCAGACAGCA		58	NA	InUTR
Drosophila melanogaster	50	Pen	FBgn0011823	FBtr0079937	2	1	1	70	2L	10058758	10058853	ACAGATCAACAGACTGACG		59	10058887	10058905	TTGTGCTGTAGAAGGAGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Cpr31A	FBgn0053302	FBtr0079936	3	1	1	120	2L	10055396	10055415	GACATCAACGGATTCAATGC		59	10055498	10055516	GAGCGGAGGAAATATGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17834	FBgn0028394	FBtr0079686,FBtr0079689,FBtr0079687,FBtr0079688	2	4	4	72	2L	8536208	8536227	TGCTGGGAAGATTTCTACTG		59	8536262	8536905	GATTGTAGTTGGCGATGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7795	FBgn0032019	FBtr0079611	1	1	2	93	2L	8317694	8317714	GAGAATTCCTCATACCATCAC		57	8317538	8317639	ATTATTCCTTGACCTGCAG		57	NA	
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079622	2	1	4	160	2L	8245101	8245119	ATTCCGGTGATGATCTTCC		59	8244491	8244977	GAGAGGTTTACCTTCTCCG		59	NA	
Drosophila melanogaster	50	CG8486	FBgn0031993	FBtr0079583,FBtr0079582	2	2	3	170	2L	8183484	8183502	TGACCATAAGACTGAACCG		58	8183702	8184140	GTTCACTTTCATCGCTCTC		58	NA	
Drosophila melanogaster	50	CG31607	FBgn0051607	FBtr0079579	3	1	1	130	2L	8154039	8154165	AGAAGAGGATCAGGTTATTCC		58	8154257	8154275	CACAATGTGGATGATCTCG		58	NA	
Drosophila melanogaster	50	CG31606	FBgn0051606	FBtr0079578,FBtr0079577	1	2	2	60	2L	8147879	8147898	TCGAATATGCAGAGTACAGG		58	8147921	8147939	ACTATGGTCTTTCCATGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567	3	8	9	166	2L	8089724	8105699	GCTCAATCACTTGATAAGCTG		59	8106857	8106875	GAAGGTACATCCGTCACAG		59	NA	
Drosophila melanogaster	50	CG7154	FBgn0031947	FBtr0079488	3	1	1	94	2L	7783885	7783903	TTTAATAGGCAGCAGTCCC		59	7784014	7784032	GTGTAAGGGCATTAAGGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11266	FBgn0031883	FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638	1	7	7	116	2L	7036715	7036823	TTATCACGTACCACAATGCT		59	7036902	7036920	TATTCATGTCCAGTCGCTC		59	NA	
Drosophila melanogaster	50	Cpr	FBgn0015623	FBtr0079251,FBtr0079250	2	2	2	80	2L	6344879	6344897	GCTGAGTATTGTACTGACG		57	6344940	6345044	GTATTTCTCCTTTCCTTCGG		57	NA	
Drosophila melanogaster	50	mtm	FBgn0025742	FBtr0079223	3	1	1	60	2L	6036013	6036031	ATTACAAGGTGTTCCCAGC		59	6035971	6035989	CTTCATCGTCGGAATTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tkv	FBgn0003716	FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086	2	4	4	228	2L	5221390	5221470	TTCTCATGTGCAAGGTAGC		59	5221180	5221198	AAACATAAGCTAGCCACGA		58	NA	DesignRelaxed
Drosophila melanogaster	50	RpL37A	FBgn0028696	FBtr0079016,FBtr0079017	1	2	2	238	2L	5071263	5071281	TATGGTACCCGTTATGGTG		58	5071736	5071754	TACTGTTCCTTGGTTTCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG12194	FBgn0031636	FBtr0077385	2	1	1	80	2L	4840095	4840173	TTGATTCTAGGTTGGATGGA		58	4840216	4840234	TAGTTTGGCCAATTCTCCA		58	NA	
Drosophila melanogaster	50	CG15423	FBgn0031580	FBtr0077506	3	1	1	60	2L	4006166	4006184	AAGGCCAATTGTAGAGGTG		59	4006208	4006226	GATCTCAATCACTGGTCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305	2	10	10	81	2L	3624268	3624289	GCTAATTTCCAATCTAGACGAG		58	3623866	3624229	GAATTCCTCGTTGATCTTTCTG		59	NA	
Drosophila melanogaster	50	CG3332	FBgn0031514	FBtr0077608,FBtr0077609	2	2	2	84	2L	3276462	3276540	GATAACGGGCATGATCCTC		59	3276396	3276415	GAGATTGTCCAGATCCATCG		59	NA	
Drosophila melanogaster	50	Alp23B	FBgn0031461	FBtr0077720,FBtr0077721	1	2	2	93	2L	2810634	2811157	AATGTGCAAGATGAGTGGA		59	2811214	2811232	AGGTGATTTGGATGAGGTG		59	NA	
Drosophila melanogaster	50	CG3077	FBgn0031457	FBtr0077736	2	1	1	175	2L	2764546	2764564	GTGCGATATTGATCTGCTG		58	2764326	2764346	GATCGATCTTGTGTATAGCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	GlyP	FBgn0004507	FBtr0100485,FBtr0077828	3	2	2	77	2L	2134900	2134918	CAACAACCACGTAAACACG		59	2134958	2135047	CCATCGTTGAAGAACTTGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Gr22e	FBgn0045497	FBtr0077888	3	1	1	60	2L	1784450	1784471	GTAATTATTCTCTGGAGGAGTG		57	1784492	1784510	GAGAAGCCTTTGTACAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14352	FBgn0031351	FBtr0077876	2	1	1	61	2L	1612055	1612073	CTCTACCGAAGTCAAGCTC		59	1612096	1612116	AGTAGTTTGGTCTGTCAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14340	FBgn0031302	FBtr0077955	3	1	1	152	2L	1113625	1113643	TAAATCCCGATTTCCAGCA		58	1113757	1113837	GGCTACTTTCAGATTTCTGTG		58	NA	
Drosophila melanogaster	50	PNUTS	FBgn0053526	FBtr0091486,FBtr0091489,FBtr0091487,FBtr0091488	2	4	4	63	2L	872031	872049	CTCAGCACCTATTCTGGTC		59	872076	872221	TAGAATGCGTACACCTTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33127	FBgn0053127	FBtr0078052	3	1	1	66	2L	322202	322221	CCTGACATTGAGGGATACAG		59	322247	322268	ATCGTAGCCATCTATAATCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31973	FBgn0051973	FBtr0113416,FBtr0078163,FBtr0078164	2	3	4	92	2L	38598	38618	CGATGGTATTATTCACCAAGC		59	35204	38544	GACTCAACTCTATAGGCGG		58	NA	
Drosophila melanogaster	50	CG41105	FBgn0069939	FBtr0111201	2	1	2	195	X	22268593	22268611	TTCTCTTAACCGAGATGGG		58	22268770	22269584	AGGAATAGTCCATCCTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hs3st-B	FBgn0031005	FBtr0074676	2	1	1	177	X	19144234	19144804	AAATTACTGATTGTGGTGCG		59	19144944	19144962	CCAGATAGCGTGCATAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6540	FBgn0030943	FBtr0074601	2	1	1	108	X	18542383	18542401	CAACCAGACCCAGTATCTG		59	18542471	18542550	GGCGAAACTTATATTAGAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	os	FBgn0004956	FBtr0074581,FBtr0112847	3	2	2	71	X	18201313	18201331	GTGGCAACTATCATCCCTC		59	18201185	18201278	TCAGCTGATTGAAGCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PGRP-LE	FBgn0030695	FBtr0074183	2	1	1	157	X	15695627	15695717	AGTGCTTCCACATTGAGTC		59	15695488	15695507	GCATCCAATGAAACTGATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Grip128	FBgn0026433	FBtr0074075,FBtr0100271	2	2	2	139	X	15362477	15362559	GATCACGGATTCCTGTCTG		59	15362356	15362375	TGTTTGGTCGGGATTATAGG		59	NA	InUTR
Drosophila melanogaster	50	HDAC4	FBgn0041210	FBtr0073798,FBtr0100425,FBtr0073797	2	3	3	182	X	13159291	13159378	GATAGCCATACAGCAAACG		58	13159022	13159040	GTTTCATCCTGATCCATCG		57	NA	
Drosophila melanogaster	50	CG1354	FBgn0030151	FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386	2	4	4	98	X	9674840	9674858	CCGAATACGATTCGATGCT		59	9674919	9675204	TCAAGGCCTCAATATCATGG		59	NA	
Drosophila melanogaster	50	Sp1	FBgn0020378	FBtr0112894	2	1	3	96	X	9647339	9647592	TAACATCACAGCTAGTCGC		59	9647652	9647670	GGATGACTGTGATCCAGAG		59	NA	
Drosophila melanogaster	50	Cp7Fc	FBgn0014466	FBtr0071202	2	1	1	60	X	8371182	8371203	CTATACTACTCTTGTTGGTCTC		57	8371222	8371314	GATTCACTTAGATTCTCAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18155	FBgn0029945	FBtr0071051	3	1	1	233	X	7223255	7223356	CGAATTGATACATAAGGATGGC		59	7223632	7223651	TATGTTACATTCGAAAGCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Marf	FBgn0029870	FBtr0070909,FBtr0070910,FBtr0070908	1	3	3	102	X	6262083	6262570	AGGAATCGGTTAAGTCTCAG		58	6262635	6262653	ACGAAGAATACCCTTTCGG		59	NA	
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	3	13	13	81	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567131	2567221	CTGTATTGAGAGCTCATGCT		59	NA	
Drosophila melanogaster	50	A3-3	FBgn0028550	FBtr0070244	2	1	1	237	X	1146119	1154000	CATTTATTGATTCGATGCCG		57	1145901	1145921	GCTTATCACATGTCAAACTCG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	svr	FBgn0004648	FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070086,FBtr0070082,FBtr0070085	2	7	7	108	X	396239	396323	CTATGACAACTCCTTGGCT		58	396394	396413	CATAATCGGATGGTTGTCAG		58	NA	
Drosophila melanogaster	50	CG41428	FBgn0085647	FBtr0114091	1	1	1	67	U	4185389	4186970	GACGTTCTGAACTGAAAGC		59	4185340	4185359	CGACTTGATATTTACGGCAG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41561	FBgn0085692	FBtr0114141	3	1	1	60	U	4051896	4051915	GTAAGACCCTCTGATATGCT		58	4051797	4051876	GAATACATTTGCATAGATCCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sphinx	FBgn0083990	FBtr0111044	1	1	3	60	4	996136	996157	CCACTTTAAGATTCCTGTAGTG		58	996177	997399	TTTACACAAGATGGAGAAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bnk	FBgn0004389	FBtr0085754	3	1	1	168	3R	27019407	27019426	ATGTCCAAGCGAAATAATGG		58	27019557	27019575	ACTCAAAGGTGTTGGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2246	FBgn0039790	FBtr0085677,FBtr0085676,FBtr0085674,FBtr0085678,FBtr0085675,FBtr0085673	3	6	6	82	3R	26421160	26421180	GGAGACTATTGTGGAGATCAG		59	26421037	26421117	TATTGTTGGCATCCTTTGTG		58	NA	
Drosophila melanogaster	50	alph	FBgn0086361	FBtr0085446,FBtr0085442,FBtr0085444,FBtr0085443,FBtr0085445	1	5	5	80	3R	25423005	25423023	TGAAGTGTCTGCAGAACAG		59	25423065	25423157	GCTCGATAACGTGATATTTGG		59	NA	
Drosophila melanogaster	50	CG14507	FBgn0039655	FBtr0113305	2	1	1	72	3R	25052648	25052955	GATCATAGGGACACTCGAC		58	25052594	25052612	GGAACTCCAGACGAATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3368	FBgn0039508	FBtr0085163	3	1	1	63	3R	23111733	23111809	TCTGGTTAACGTTGAAGGG		59	23111836	23111854	GTTTGCAATTGGTAACACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11771	FBgn0039252	FBtr0084748	2	1	1	97	3R	20757945	20758021	GGTTACATAGTGCTGGTACC		59	20758081	20758099	ATGGTGATGTCACTGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15025	FBgn0038709	FBtr0083768	2	1	1	61	3R	15316150	15316302	ATCTAAGCCTTCTGTATCCG		58	15316108	15316132	CTATATCCTTGATACTCCTAGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12269	FBgn0038665	FBtr0083722	1	1	1	84	3R	14804290	14804383	ATCTCATCAAGAGCATGGC		59	14804224	14804242	AAGTCCTCATCGGAAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083348	2	1	6	93	3R	12484784	12558454	TATCGCAGGTACAAATGGTC		59	12484710	12484728	ATGATTCGTGTGGAACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst89B	FBgn0020399	FBtr0083260	1	1	1	90	3R	12093123	12093141	TTTGGATGATCTTCTCCGC		59	12093268	12093288	CCAAACCAATTGAGTAGACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CycC	FBgn0004597	FBtr0083010	1	1	1	60	3R	10715231	10715249	GCGTATCGTAAACGATTCC		58	10715129	10715209	GATCTGGTAAGGAGGATAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082801,FBtr0082806	3	2	8	98	3R	9488125	9488709	AAATCATCCTCTCGTTATGG		57	9488770	9491189	GTAATCCTTGAGATCCTGC		57	NA	
Drosophila melanogaster	50	Octbeta3R	FBgn0053959	FBtr0099995,FBtr0099997,FBtr0099998,FBtr0099996,FBtr0099999	1	5	5	80	3R	8338734	8338873	CTTTCTGTGGTATGTCATCAC		58	8338674	8338692	ATCCAGAATAACACCACCA		58	NA	
Drosophila melanogaster	50	CG34304	FBgn0085333	FBtr0112500	2	1	1	294	3R	6484545	6484563	CATTTCCGTCACATTGACG		59	6485005	6487124	CACCGACAAAGAACATCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	AP-47	FBgn0024833	FBtr0082114	3	1	1	184	3R	5384309	5384327	TCTCAACGACAAGGTTCTG		59	5384084	5384161	GTTTGACATGCGTGTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pbprp4	FBgn0011282	FBtr0112867	1	1	2	112	3R	3077101	3077119	TGGATGACATATCCACCAC		58	3076952	3077025	CAAGACATTGGTCATCGAC		58	NA	
Drosophila melanogaster	50	CG1041	FBgn0037440	FBtr0110774	3	1	2	97	3R	2199092	2199189	TATCAAAGCCCAACGTCTG		59	2198948	2199033	GAGTTCTTGGTCAAATTCCAC		59	NA	
Drosophila melanogaster	50	CG2091	FBgn0037372	FBtr0078678	1	1	1	118	3R	1580116	1580134	GAAGAGTCTCCCAAGAAGC		59	1579955	1580034	TTCACACTGCACAAATCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	MTA1-like	FBgn0027951	FBtr0078734,FBtr0078733	3	2	2	91	3R	1466844	1466862	CTCACAATAATTCCCACGC		58	1466658	1466792	GGAACTATAGTAACTTCAGTGC		58	NA	
Drosophila melanogaster	50	ORMDL	FBgn0037110	FBtr0078423	2	1	1	222	3L	21628593	21628611	CTCTTCTTATCAGTGCCCT		58	21628853	21629088	AAAGAACAATGGGAACAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33283	FBgn0053283	FBtr0078285	3	1	1	119	3L	20972271	20972289	GGAGTGAGAAGAGTTCTCC		58	20972372	20972475	CTTGGACCACTTCTCTTCC		59	NA	
Drosophila melanogaster	50	CG13252	FBgn0037016	FBtr0078245	2	1	1	215	3L	20730547	20730566	TATTTGTTTCCAGTGCAACG		59	20735860	20735880	GACCTCTATTGTAGGATACCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17637	FBgn0037004	FBtr0078207	1	1	1	60	3L	20497987	20498008	CTTAAATGGAGAAGGAAAGGTG		58	20498027	20498047	GACTATATTCTGTGAGGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32223	FBgn0036946	FBtr0074861	1	1	1	190	3L	20183913	20183932	CTCCTTCATCCATGATCAGG		59	20162148	20183760	GGATTCGAGTCGTTACCTG		59	NA	
Drosophila melanogaster	50	Su(z)12	FBgn0020887	FBtr0074917,FBtr0074916	3	2	2	119	3L	19914079	19914162	GGTCACAACAGACTCTACC		59	19913978	19913996	CATCTGGATGGTCTTCTGG		59	NA	
Drosophila melanogaster	50	l(3)neo26	FBgn0036815	FBtr0075057,FBtr0075056	1	2	2	61	3L	18814990	18815008	TTCAGCCGATTCCAAAGAG		59	18815030	18815051	CAAGTAAATATCCATGGACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13380	FBgn0036799	FBtr0100555	2	1	1	60	3L	18608865	18608883	TAACTAGACTGCGCTTCTC		58	18594546	18608843	GCACTCCAATTTCTAATGCTG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG7320	FBgn0036782	FBtr0075128	3	1	1	61	3L	18194843	18194924	ACAGATAAGGAACAGTATGTGG		59	18194943	18194964	CTGAAGTCTTCATAGAAACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32158	FBgn0052158	FBtr0075402,FBtr0075406,FBtr0075407,FBtr0113426	2	4	7	106	3L	16501641	16501659	ATGTGAACGGTAGCATCAG		59	16501154	16501572	CAGCAGGAAGGTATTGTAGG		59	NA	
Drosophila melanogaster	50	CG33061	FBgn0053061	FBtr0113448	2	1	1	169	3L	16323459	16323477	GATCGAGGAGTCCATTTGG		59	16323609	16323688	GAAGTGTTGCTCAACTTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4962	FBgn0036597	FBtr0075471	2	1	1	152	3L	16288493	16288574	CTGATTGCCCTCATCTCTG		59	16288359	16288377	GTAGCTCTTGATGATCGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bbg	FBgn0036425	FBtr0075726	1	1	1	60	3L	14504030	14504048	TGAAGAGGAGTTCTCCTCC		59	14503004	14504006	CGATTTGACAAGGTTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13309	FBgn0035933	FBtr0076582	3	1	1	63	3L	8804028	8804117	GCAGGCAATATGTGAACTG		59	8804143	8804162	GGACAAGTGTACACATTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cp19	FBgn0000358	FBtr0076573	2	1	1	109	3L	8723010	8723117	GAACAAGTTCGCTACTCTG		58	8723190	8723208	TATCCTGACCGTAAGATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8005	FBgn0035854	FBtr0076695	1	1	1	78	3L	8191506	8191526	AAGCTCTTCGAATCCTATGTG		59	8191565	8191642	GCATTCTGTTAATTTCCCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13299	FBgn0035694	FBtr0077013	3	1	1	61	3L	6225403	6225421	ACCTCAGAAAGCAAGATGG		59	6225297	6225378	TTGATTGTCTGCATGACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13297	FBgn0035685	FBtr0077020	3	1	1	63	3L	6149979	6150189	AACTACACTCTTCCTGATGG		58	6149935	6149953	CTGAAGTTCCACTCAGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32249	FBgn0052249	FBtr0073303	3	1	1	268	3L	4469067	4470099	AATTTCTTTCTGGCTTGGC		58	4470331	4470349	CAGATAGGTGTTACGAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	metl	FBgn0035247	FBtr0072813	3	1	2	291	3L	1638854	1639059	CTTCAAGCACAATGCTTGG		59	1638581	1638599	TGTGTTTCCTACTCCACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7879	FBgn0035235	FBtr0072827,FBtr0072826	2	2	2	173	3L	1562995	1563981	CTTTCATCGCTTTCAGCAC		59	1562840	1562858	GAACTGGAACCGATACTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	rno	FBgn0035106	FBtr0072531,FBtr0072532	2	2	2	137	3L	197455	197473	ATGAGAATGTCATCTGCGA		58	197278	197354	ATAGCCATTGTCCTGATGG		59	NA	
Drosophila melanogaster	50	CG16837	FBgn0035009	FBtr0072297	3	1	1	65	2R	20363003	20363024	AGTTCGAGGTTATCAGTAACTG		59	20363049	20363139	AATAACCGCCTTCTTTACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shu	FBgn0003401	FBtr0072237	3	1	1	236	2R	19730066	19730084	CTCATAGGAGATGCGAAGG		59	19729773	19729866	TTGGTTCAGGGTAGTAAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	yellow-d	FBgn0041712	FBtr0072011	2	1	1	128	2R	19267484	19267503	TACAATTCGCGAAACTTTGG		59	19267594	19267673	TTTCTGGTAGCGATTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30194	FBgn0050194	FBtr0071954,FBtr0071955,FBtr0071956	2	3	3	119	2R	18947457	18947475	GGTCTACATCTACACGTCG		59	18947617	18947635	ACATCCTGATCCTTGAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gmer	FBgn0034794	FBtr0071905	1	1	1	99	2R	18775301	18775375	AATGGAAGACTGGTCTGTG		59	18775220	18775238	TAAATGCGTAGTCTGGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9308	FBgn0034681	FBtr0071749	3	1	1	60	2R	17922941	17922959	GGCGTGGTCTATATTTGGA		59	17922982	17923001	GTAGTATACCTCCAGAACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10433	FBgn0034638	FBtr0071691	1	1	2	169	2R	17494114	17494195	AGTTACTACATGCTGCAGG		59	17493856	17493981	TTTGATCGGAGTTCGTAGC		59	NA	
Drosophila melanogaster	50	CG18067	FBgn0034512	FBtr0086216	1	1	1	61	2R	16422047	16422065	GAGCTTGGATTCTACTGGG		59	16422090	16422169	TATATTCGCAGCGCTAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8920	FBgn0027529	FBtr0086280,FBtr0086279	1	2	3	95	2R	16207520	16209195	GTAATCAGGTGTTCATCACAG		58	16209252	16209270	ATAAGCTTGTGGACTTGCT		59	NA	
Drosophila melanogaster	50	Obp56d	FBgn0034470	FBtr0086477	3	1	1	62	2R	15591018	15591036	AAACGGCAATTTCGATGAC		59	15590974	15590993	TTCTCCAAGAAACAATTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	olf186-F	FBgn0041585	FBtr0086798,FBtr0086797,FBtr0086795	2	3	5	224	2R	13745256	13745274	TAAAGGCATCCAGCAAGAC		59	13746921	13746940	GGACCAGGGAAATACTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8950	FBgn0034186	FBtr0087013	1	1	1	62	2R	12948300	12948374	CAGGATCTTCAGGATCCTG		58	12948256	12948274	ATCTTTGACGGTCAGATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9001	FBgn0034175	FBtr0087060	3	1	1	107	2R	12887577	12887595	CATTTCTGGGATGATCCAC		57	12887435	12887506	GTAGGCCACTTGTATGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ef1beta	FBgn0028737	FBtr0087041	3	1	1	134	2R	12755779	12755798	TGTTAAACGCGAATTTACCC		59	12755895	12756012	CCTTGCTGGGAGTATATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33017	FBgn0053017	FBtr0087135	3	1	1	70	2R	12160144	12160225	GAGGAGGAAGCTAACTGTC		59	12160258	12160277	GATATGAATGTGTCCTCCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fs	FBgn0034004	FBtr0087398	1	1	1	131	2R	11111896	11111914	AAAGGATAACTGCCTGGTG		59	11111717	11111735	CACGAGTTGTATGTCTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8029	FBgn0033393	FBtr0088587,FBtr0088588	2	2	2	74	2R	5095833	5095923	CAGTCTGGAGTCACATGAC		59	5095961	5095979	AGGTACAGATAAGCCACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14764	FBgn0033236	FBtr0088880	1	1	1	93	2R	3841432	3841450	AGAACATCGTTGTCCAGAC		59	3835976	3835994	TTTGGGTCTATTTCGAGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	Prosalpha6	FBgn0026781	FBtr0088896	3	1	2	112	2R	3716004	3716146	TTTGCACACTATCGAAGCA		59	3715848	3715928	GTACTCCACTTGGTAGAGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111092,FBtr0111064,FBtr0111093,FBtr0111070,FBtr0111098,FBtr0111087,FBtr0111063,FBtr0089016,FBtr0111072,FBtr0111084,FBtr0111066,FBtr0111053,FBtr0111090,FBtr0111086,FBtr0111058,FBtr0111050,FBtr0111061,FBtr0089020,FBtr0111082,FBtr0111079,FBtr0089017,FBt	3	60	60	84	2R	3208259	3209098	CTGATAGAAAGAAACGAAACCG		59	3208196	3208215	CCATAGTATCGTAGGCTGTG		59	NA	
Drosophila melanogaster	50	CG15149	FBgn0032659	FBtr0081027	3	1	1	79	2L	18008267	18008286	GAAATTTCGCGAAGTATCCG		59	18008328	18008414	GAGCAGGATCTTTCTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Idgf1	FBgn0020416	FBtr0080860	1	1	1	60	2L	16445941	16445959	GCTAATCTGATGCTGTCTC		57	16445983	16446072	CATCGAAGTACCAAGTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16849	FBgn0032526	FBtr0080503	3	1	1	173	2L	13457862	13459928	AATCGATCATTCGTTTGGC		58	13460064	13460083	CCAATAGAGCTCTTAGTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6734	FBgn0032395	FBtr0080312	3	1	1	64	2L	12015032	12015050	CTTAGATCATAGCCTGGCC		59	12014923	12015004	GAGGTTTGAGCTGGTAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	RluA-2	FBgn0032256	FBtr0080032	2	1	1	80	2L	10482562	10482631	ACCAAGTAACGATGCTACTG		59	10482672	10482692	GTCTTCTTGGAATCAAAGGAC		58	NA	
Drosophila melanogaster	50	CG6206	FBgn0027611	FBtr0080031,FBtr0080030	1	2	2	80	2L	10460456	10460476	CACGGTTAATGAGTATGTGAG		58	10460518	10460596	CTTTCCAGAGTAACACCCT		58	NA	
Drosophila melanogaster	50	Ssb-c31a	FBgn0015299	FBtr0079590	3	1	1	61	2L	8211494	8211568	CCAGATGATCGTATCAAGC		57	8211593	8211611	TCTGAATTTGGAGCATCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ssb-c31a	FBgn0015299	FBtr0079590	1	1	1	60	2L	8211495	8211569	CAGATGATCGTATCAAGCC		57	8211593	8211611	TCTGAATTTGGAGCATCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pcp	FBgn0003046	FBtr0079388	1	1	1	64	2L	7021725	7021814	TTGTGAACTTCATCGTTGC		58	7021842	7021860	GTCCGGAATGTAGGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10399	FBgn0031877	FBtr0079351	2	1	1	143	2L	6960470	6960547	CTTGCACTTACAGCAAAGC		59	6960654	6960672	GGACAATTGGTTGATCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11221	FBgn0031855	FBtr0079303	2	1	1	249	2L	6743029	6753957	GAGAAACGCTCATTCTCCT		59	6754169	6754188	GAATGAGATGGATCTGTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14005	FBgn0031739	FBtr0079160	1	1	1	280	2L	5801594	5801675	ATTTGAACGATCGCAATCG		59	5801332	5801350	CTCTGTCTTCACTACTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18269	FBgn0031719	FBtr0079103	3	1	1	60	2L	5552354	5552372	GGACAAGGATGATGAGGAG		59	5552393	5552414	CAGTTCCTGAACTAATGTATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)05714	FBgn0010607	FBtr0079050	2	1	2	71	2L	4970769	4971092	CACCAGAATATGATTAAGGGTG		58	4970719	4970737	TGAAATTATGGAGGCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3528	FBgn0031430	FBtr0077781	1	1	1	62	2L	2517592	2517663	AAAGCAAATTTCGACCGTC		59	2517548	2517566	CTGGAGATCTCTAGACCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	smo	FBgn0003444	FBtr0078129	3	1	1	141	2L	279001	279021	GCATATGTCTTCTGTCTAACC		58	279124	279202	GTAAACTGAAGCAACCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	tRNA:CR32456	FBgn0052456	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-281bS	FBgn0067710	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:660	FBgn0065059	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	caz	FBgn0011571	FBtr0074217,FBtr0074218	3	2	2	118	X	16186668	16186931	ATGCAATAGATGTAAGACTCCC		59	16187010	16187028	ATCCACGATCATTTCCTCG		59	NA	
Drosophila melanogaster	50	Ste:CG33246	FBgn0053246	FBtr0073883	1	1	1	60	X	13942536	13942555	GTATTTCAGCGAGATACTGG		57	13942495	13942513	CAAGCCAGAGGAACTATCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	HDAC4	FBgn0041210	FBtr0073797	2	1	3	82	X	13170574	13176211	ATACCAATACACGATCTGCC		59	13170511	13170529	AAGTCCAATGTCAGAGTGG		59	NA	
Drosophila melanogaster	50	CkIIbeta	FBgn0000259	FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559	1	5	6	162	X	11689033	11689147	TGTTCCAAGGCTATATGGA		57	11689687	11689705	TTGTATTCGTGCGTATGTG		58	NA	InUTR
Drosophila melanogaster	50	CG32698	FBgn0052698	FBtr0071386	1	1	1	111	X	9730471	9730632	AGACAAGCACAGGATATCC		58	9730707	9730725	TATATTCACTGGCGTCTGC		59	NA	
Drosophila melanogaster	50	norpA	FBgn0004625	FBtr0070651,FBtr0070650	2	2	4	186	X	4248573	4251080	CTGATGAAGCATTGGATGC		59	4251230	4251248	ACTTGTCGAAGGTGAACTG		59	NA	
Drosophila melanogaster	50	CG3777	FBgn0024989	FBtr0070066,FBtr0070068,FBtr0070067	1	3	3	98	X	241723	242116	CAAACAAGACTGGTAGAAATCG		59	242175	242193	CTACTGATGTGGCATCTGG		59	NA	
Drosophila melanogaster	50	CR41604	FBgn0085814	FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269	3	4	4	104	U	3449415	3449487	TTTCTGAAGCAAAGTCCCA		59	3449555	3449573	CTTGATACTGATCTCCCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1635	FBgn0039854	FBtr0085796	1	1	1	85	3R	27414945	27414963	TATGTGACCTATCTGGGCA		59	27415071	27415089	AGGTGTTTATGACAGCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	jar	FBgn0011225	FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173	2	4	6	86	3R	20079843	20080373	CCCAAACAAATTGATCAGATCC		59	20079778	20079797	TACTTCCACTTGGACAAGTC		59	NA	
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083347	1	1	6	90	3R	12558428	12558446	GTGAGTGTCCTGAAGATCC		59	12536322	12550986	GAGTATCTCTTACCCATGTCTG		59	NA	
Drosophila melanogaster	50	CG14891	FBgn0038445	FBtr0083302,FBtr0083301	2	2	2	60	3R	12398670	12398689	TCTGTCCTCTTATCACACGA		59	12398711	12398730	ACTTGAAGCTTAGGATTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	1	8	8	283	3R	9504401	9504476	ACACGACGTAAATCAGGAG		59	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG31559	FBgn0051559	FBtr0078616	2	1	1	69	3R	1982424	1982442	TATGTGGTACAGTTCTCGC		59	1982373	1982391	GTTTCTCCGGAATCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075013	2	1	11	180	3L	19311972	19311990	CAACAAACTGAACAGTCGC		59	19303882	19306260	ATTATATCCGACCTTCTGGC		59	NA	
Drosophila melanogaster	50	CG12520	FBgn0036324	FBtr0113169	2	1	1	60	3L	12895441	12895460	TAGAGTGCTTGACCATTGAC		59	12895400	12895423	CCATAGGTTCTATAACATCTAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32252	FBgn0052252	FBtr0073251	1	1	1	73	3L	4222186	4222204	GAATGCAATGTGACCTGTG		59	4222131	4222149	GCTTCACATGATTGAACCA		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	zip	FBgn0005634	FBtr0072398,FBtr0072399,FBtr0100467,FBtr0100466	3	4	4	81	2R	20893443	20893461	AGCTTACGTGTCTAAACGA		58	20889957	20893401	CCGGAATATGTATAGATTAGGC		57	NA	
Drosophila melanogaster	50	betaTub60D	FBgn0003888	FBtr0072270	2	1	1	77	2R	20193608	20193626	AGAGAAATCGTGAACCTGC		59	20198250	20198268	CTCCTCGGAAATGATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr59a	FBgn0045483	FBtr0071964	3	1	1	60	2R	18969153	18969171	GTCAATAAGCGGAAATGGT		58	18969195	18969213	ACAGCATACTTGAGTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vps20	FBgn0034744	FBtr0071857,FBtr0071856	2	2	2	84	2R	18496532	18496550	CGAAATGCTTGACATCGAC		59	18496598	18496616	TATGGCGTCTATTTCCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8929	FBgn0034504	FBtr0086283,FBtr0086285,FBtr0086284	2	3	3	80	2R	16217662	16217743	ACCTGAAGGACTATATCAAGTG		59	16217782	16217802	AGTACTCATAGTAGCGTTCCT		59	NA	
Drosophila melanogaster	50	CG6385	FBgn0034276	FBtr0089560	1	1	1	62	2R	13642126	13642144	CTATTCTCCGCCAATACCA		58	13642017	13642035	ATCGTTTAGAGCACAGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	mthl4	FBgn0034219	FBtr0086956,FBtr0086957	2	2	2	108	2R	13333420	13333495	TTGTTGGATCTACACTGGC		59	13333330	13333349	TATGTAAATCGCCGAAAGGA		59	NA	
Drosophila melanogaster	50	CG8839	FBgn0033717	FBtr0087959,FBtr0087957,FBtr0087960,FBtr0087958	1	4	4	113	2R	8228117	8228135	TCTTCTACCAAGAGTCCGA		59	8227961	8227979	TCTGATTGCCGAACTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	SIP2	FBgn0061197	FBtr0089669,FBtr0089671	1	2	4	153	2R	8191187	8191205	AACAAAGGGAAGTGAGGAG		59	8190827	8191070	TTGGCATAATTACGGAGGG		59	NA	
Drosophila melanogaster	50	Obp47a	FBgn0033573	FBtr0088200,FBtr0088199	2	2	2	60	2R	6797804	6797825	TGTCAGTAATACCGATTACTGG		59	6797845	6797864	TTTGTTATTGCCACGAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089342,FBtr0089349	3	2	26	188	2R	6419760	6419779	GTTGAGGATTTGACACTGGA		59	6408769	6419548	GTCGTACTTCAGGTCTTGG		59	NA	
Drosophila melanogaster	50	CG11198	FBgn0033246	FBtr0113054,FBtr0088871	2	2	4	148	2R	3872948	3873116	AACACCAATCACAACTCCA		59	3872818	3872836	AACTGGACCTTCTTGATGC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111064,FBtr0111057,FBtr0111100	2	3	60	83	2R	3247002	3247020	CACCTTAAGGGAAAGAGCA		59	3236471	3246958	CTTGTACCATCTAAAGAAAGGC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111072,FBtr0111058	3	2	60	85	2R	3246841	3249232	GTCATCACAGAACCAATTGG		59	3246775	3246793	CTCAGCAATCTCTTGACCT		58	NA	
Drosophila melanogaster	50	Df31	FBgn0022893	FBtr0085919,FBtr0085920,FBtr0100293	3	3	3	78	2L	21627628	21627646	AGGATGAGGTTCAGAATGG		58	21627568	21627586	TTACTGAGTTTGCTGCTCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	dl	FBgn0000462	FBtr0081005,FBtr0081006	1	2	3	107	2L	17438009	17438159	GAACCAAGAGATACCTCGC		59	17437920	17437938	GTTGTGGTTGTAGTTGCTC		58	NA	
Drosophila melanogaster	50	Ugt36Ba	FBgn0040262	FBtr0080909	3	1	1	60	2L	16794475	16794495	CATCATGGAAGACCAAATGAC		59	16794517	16794535	CATAGTGCTGACCAGTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpII33	FBgn0026373	FBtr0080544,FBtr0080545	2	2	2	122	2L	13833874	13833892	ATAATTAAGCTGCGCAAGG		58	13833978	13833996	GTTGTCCGGATCATACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090029	1	2	17	195	2L	12726933	12726951	TATATCAAGAGCGTTGGCA		58	12727110	12736604	TATAGCTGAAGACTTGGCC		58	NA	
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079623	2	1	4	87	2L	8244695	8244713	CTCCTGCCATATCCTTTGG		59	8244491	8244644	GAGAGGTTTACACAACGCT		59	NA	
Drosophila melanogaster	50	CG14015	FBgn0031716	FBtr0079126	1	1	1	124	2L	5538026	5538102	CATTGGACACATAAGGCTC		58	5537920	5537938	GATACGACCAGTTCTTCCA		58	NA	
Drosophila melanogaster	50	Rbp9	FBgn0010263	FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635	1	7	7	80	2L	2963120	2963232	GCAATCTGTTAAGGTGATTCG		59	2963273	2963292	TCTTCGTAATTCGTCATGGT		59	NA	
Drosophila melanogaster	50	CG7378	FBgn0030976	FBtr0074649,FBtr0113004	3	2	2	135	X	18801684	18801764	CATCTACATTGGTGATGCT		57	18801863	18801881	CATATCCCGGTAGTAGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Or7a	FBgn0030016	FBtr0071186	3	1	1	87	X	8058644	8058662	GCTCTACTATCTTCATCGC		57	8058374	8058593	TATACTGAAGTACGTGGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33692	FBgn0064121	FBtr0091675	3	1	3	165	X	6766947	6771957	AACCACATGTCACTAGCTG		59	6772086	6772104	CATTACCCGAATTCGAGGA		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG6067	FBgn0029828	FBtr0070864	3	1	1	137	X	5851208	5851226	ATACGACTGTTGACCTTGG		59	5851396	5851414	TGACGGATGGTAGTATGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14803	FBgn0023513	FBtr0070310	1	1	1	263	X	1763666	1763684	ATGATCAAGCGTTCCTAGG		59	1763911	1763994	AAATTGCATTGCTCTCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14872	FBgn0038346	FBtr0083157	2	1	2	114	3R	11334279	11334398	TAACCTAACGCAACTCTCC		59	11334183	11334201	CGAGAGTATGTCATTCTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11670	FBgn0038114	FBtr0113230,FBtr0113231	2	2	2	83	3R	8869500	8869519	AAGTCGTAAACACTATCGCT		59	8869562	8869652	GTATAAACACCTGGAAGTTCAC		58	NA	
Drosophila melanogaster	50	Gbeta76C	FBgn0004623	FBtr0074949	2	1	1	96	3L	19681761	19681833	AATATGCCATTGGGATCTG		57	19681893	19681911	CTTCATATCTGGCGAAAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	PGRP-LC	FBgn0035976	FBtr0089491	3	1	3	198	3L	9338223	9340757	AGATCTGGACAACATTGGTG		59	9340918	9340936	TATATCGTAGGTCTGCAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10144	FBgn0035704	FBtr0076986	2	1	1	128	3L	6486753	6486830	AGAGAATAAGCTTCCTGGT		57	6486643	6486661	AAAGCATGATGATACGCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Obp57d	FBgn0043536	FBtr0086264	2	1	1	60	2R	16436447	16436532	TAGAATTGCCGATTCTAACG		57	16436406	16436427	GGCTATATCTTCGTCTATTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mmp2	FBgn0033438	FBtr0088500	3	1	2	140	2R	5545211	5545229	TGACATGAAAGAGTCACGA		58	5530972	5545110	AGATACATACCCATCAAGAAGG		59	NA	
Drosophila melanogaster	50	CG30383	FBgn0050383	FBtr0088897	1	1	1	93	2R	3711949	3712200	TAAGAAAGGCGATTCCCTG		59	3711874	3711892	GACTTTGCTTCGATACCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31735	FBgn0051735	FBtr0080791,FBtr0080790	1	2	2	60	2L	15896633	15896747	CTGCGATTTGATTTACGCA		59	15896768	15896789	GCAGTTCTTGGTAGTTTATGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mt2	FBgn0028707	FBtr0110911	3	1	2	143	2L	12096646	12096713	TATGCCCAATTGGATGGAC		59	12096820	12096838	CTGAAGCTTTGTGACTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	escl	FBgn0032391	FBtr0100626,FBtr0080286	1	2	2	60	2L	11991253	11991332	AGCCCTTGTACAAATATAGCTC		59	11991353	11991371	ACTCCGAAGATCTGATGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me28S-C788a	FBgn0086063	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG12446	FBgn0031201	FBtr0077343	3	1	1	60	X	22211991	22212009	CTGCATCGACTTAAGTCTG		57	22211949	22211970	TAAACAGCTCCATTATAGTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lcs	FBgn0028583	FBtr0077220	1	1	1	60	X	21267912	21267930	CACTACAGAGTCCTCTACG		58	21267870	21267889	TTATTCTGTGGAGGATGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hydra	FBgn0031128	FBtr0077294,FBtr0077295	2	2	2	94	X	20542568	20542708	CCTTAAAGTAGAAGTCGTGGT		59	20542494	20542513	TATGGGTATGATTGGGTTGG		59	NA	
Drosophila melanogaster	50	CG11710	FBgn0031115	FBtr0089643,FBtr0089642	1	2	2	117	X	20298917	20298935	TACCGAGAGCTATATCCCA		58	20298758	20298836	GCAGCTCGTATATCTTGTG		58	NA	
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089399	3	1	13	92	X	20105893	20105911	AAGAGACACTGGTCTACAC		58	20101659	20104508	CTTCGTCGTCATAATAATCCG		58	NA	
Drosophila melanogaster	50	CG34331	FBgn0085360	FBtr0112533	3	1	1	105	X	20016514	20016532	GAGATGAGCGCAATAAAGC		59	20016601	20016619	TATCGGGAACATTCGTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12702	FBgn0031070	FBtr0074809	3	1	1	110	X	19654455	19654531	CTGTAGCAAAGCATGTGTC		59	19654363	19654381	AGATCGAGCTTAGATTGCG		59	NA	
Drosophila melanogaster	50	CG32533	FBgn0052533	FBtr0074786	2	1	1	105	X	19372183	19372201	AAACGCTCTCAGAGAAACC		59	19372042	19372060	CGAAGATAAGGACGTCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7326	FBgn0030970	FBtr0074653	3	1	1	60	X	18757174	18757192	AACCAATTAGCTTAGTGCC		57	18757132	18757150	ATGACCACATAGTTGAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32563	FBgn0052563	FBtr0074391	3	1	1	60	X	17102927	17102946	CATCGATACCTTCGATACCT		58	17102968	17102987	TCCACATTATCATTGACCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12433	FBgn0030811	FBtr0074379	2	1	1	60	X	16917152	16917172	GGATCAAAGTCGAGATATTGG		58	16917194	16917212	ATGAAGCCTGAAACTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13002	FBgn0030804	FBtr0074343	2	1	1	78	X	16784352	16784370	GGAGGAGATGATTTGTCCG		59	16784541	16784559	GTTTCTCACAAACACGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9609	FBgn0030787	FBtr0074356	3	1	1	64	X	16680118	16680138	GACAAATGGACGTTGTATACG		59	16680074	16680092	CACTTATGGCGATTCTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32574	FBgn0052574	FBtr0074329	1	1	1	133	X	16637873	16637974	AAATTCAGGCCGAATACGA		59	16638071	16638089	GTAGTTAGAGCTGCCAGAG		59	NA	
Drosophila melanogaster	50	nonA	FBgn0004227	FBtr0074233	1	1	3	60	X	16259644	16259662	TGATTGGAAACAATGCTGC		59	16265357	16265375	TTTATAGGACCGTCAAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CalpC	FBgn0030741	FBtr0074226	1	1	1	60	X	16220051	16220070	TCTTCGGTCTTCTACTACCA		59	16220093	16220111	AATCCATGATACGCTTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lcch3	FBgn0010240	FBtr0074129,FBtr0074127,FBtr0074128	2	3	3	96	X	15821838	15821859	TGCCGTTAACTATACTTACTGG		59	15821915	15822000	GGATCTTTCACTCTTTCCGA		59	NA	
Drosophila melanogaster	50	Myb	FBgn0002914	FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169	3	4	5	86	X	15749879	15749897	CCAAGGTCTATAATCGCGT		59	15749747	15749829	GTCCAAGTTGACTCTTGTG		58	NA	
Drosophila melanogaster	50	CG32581	FBgn0052581	FBtr0113439,FBtr0074184	1	2	2	196	X	15691625	15691707	GATCCACGTAACAAAGTTCC		58	15691383	15691404	TCGTGTAGCCTTCTAATATCAG		59	NA	
Drosophila melanogaster	50	CG8974	FBgn0030693	FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186	2	5	5	211	X	15688455	15688537	GATCCACGTAACAAAGTTCC		58	15688198	15688216	TGTTCATCCTCGTATTGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Rhp	FBgn0026374	FBtr0074096,FBtr0074095	1	2	2	80	X	15685124	15685279	TCTATCAGAGCGAAAGTCAC		59	15685320	15685340	CCATGAAATTGATCTCCTTGG		59	NA	
Drosophila melanogaster	50	l(1)G0007	FBgn0026713	FBtr0073900,FBtr0073901	3	2	2	97	X	14117987	14118070	CAGAACAATTACAGTTCGACC		59	14118129	14118147	ATGATGTCCTTAAGCTGCT		58	NA	
Drosophila melanogaster	50	CG11727	FBgn0030299	FBtr0073546,FBtr0073547	2	2	2	88	X	11331116	11331135	GATCATACTTGGAGGTCTCG		59	11330817	11331066	GGATACGTTATTCTCCTGCA		59	NA	
Drosophila melanogaster	50	CG11122	FBgn0030266	FBtr0073481	3	1	1	60	X	11014721	11014741	GTCAAGTCGAAATCCAAATCC		59	11014681	11014701	GCTGATTGTAGATTCTCTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2061	FBgn0027498	FBtr0073429	1	1	3	171	X	10986856	10986874	CCATTTCCACCTGAGACAG		59	10987126	10987144	TGGCGAAAGGTGTATTCTC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG11203	FBgn0030249	FBtr0073385,FBtr0112978	2	2	2	185	X	10811067	10811140	AATCATTCCACAGGAGTGC		59	10811285	10811307	GAGGATAGATCGTCCTTATTTCC		59	NA	
Drosophila melanogaster	50	CG12637	FBgn0030224	FBtr0071504	3	1	1	60	X	10566720	10566738	CATTTCGAGGTGATTCTCC		57	10566678	10566698	GAATAATAGCCGGATACACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9806	FBgn0030222	FBtr0071506	3	1	1	112	X	10520296	10520314	AACACCGCAGATTATTGTC		58	10520146	10520220	CTAAATGCTCGTGACTCTG		57	NA	
Drosophila melanogaster	50	spri	FBgn0085443	FBtr0112688,FBtr0112689	3	2	4	87	X	10386360	10390835	CGTGAAGTCTTATGTCACC		57	10386291	10386309	CCAATTGAAGGGTGTATGC		58	NA	
Drosophila melanogaster	50	CG32682	FBgn0052682	FBtr0071480	2	1	1	61	X	10201913	10201932	TAAACAGGTATACACTGGGC		59	10201871	10201889	TTTCTAATTCAAGTGCCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2962	FBgn0030186	FBtr0071486	3	1	1	234	X	10110588	10110609	ATCAAGTGGATTAGTAGTCAGC		59	10109948	10109966	CTGATGGATCACCTTGACC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	c11.1	FBgn0040236	FBtr0071326	1	1	1	108	X	9172925	9173001	TTCATACGCATAGGTGGAC		59	9172835	9172853	ACTTCATCTTGAGCTGCTG		59	NA	
Drosophila melanogaster	50	CG12772	FBgn0030055	FBtr0071221	1	1	1	107	X	8573709	8573727	TACAAGCACAAGGAACTGG		59	8573798	8573884	GAAGAATGACTGCTCCCTC		59	NA	
Drosophila melanogaster	50	CG1575	FBgn0029999	FBtr0071151	2	1	1	62	X	8012852	8012870	GCTCCTGAGATAGTCAGTC		58	8012896	8012914	CTCTTGGCCTTCGATATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	3	8	8	60	X	6579593	6579674	GCCTTCAATGTGACTTCTC		58	6579697	6579716	GTGGATAACTGTCCACAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Rpt4	FBgn0028685	FBtr0070929	2	1	1	90	X	6184930	6184948	GGAGAACGATCTAAAGGCC		59	6184795	6184879	GGCCTTCACAATGAATTTATCC		59	NA	
Drosophila melanogaster	50	Pp2C1	FBgn0022768	FBtr0070685	2	1	1	108	X	4577452	4577534	TCCCAGTACCTTTAGATGC		58	4577362	4577380	TATCTCGCCGATTAGATGC		59	NA	
Drosophila melanogaster	50	CG10801	FBgn0029660	FBtr0070526	3	1	1	160	X	3355834	3355852	TTGAATTACTCCTGGACGG		58	3355976	3356094	ATCAAGGAGCAAATCTCCG		59	NA	
Drosophila melanogaster	50	CG14045	FBgn0040387	FBtr0070463	2	1	1	99	X	2278344	2278362	ATCAGCGATTCAACTTCCA		59	2277628	2278282	GGAACTGAGTTTAAATGGCG		59	NA	
Drosophila melanogaster	50	CG34052	FBgn0054052	FBtr0100107	1	1	1	91	X	2216175	2216193	GTACAGTAAGGACTGCCTG		59	2216038	2216056	TTTGGGCTGAAGTACAGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG3835	FBgn0023507	FBtr0070383,FBtr0070382,FBtr0070381	1	3	3	272	X	2038240	2038324	TTCAAGTTCCTGAACTCCC		59	2038560	2038578	AATGTTGTAGAAGTCCCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4199	FBgn0025628	FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333	3	4	6	178	X	1965424	1965442	CAAGGAGTACAAGACCACG		59	1962328	1962346	GATCCGTAACTCTGCAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3573	FBgn0023508	FBtr0070317	1	1	1	86	X	1818996	1819014	CTGCAGGAGCTAGATACTC		58	1819061	1819148	CATCATCTTATCGATCCATTGC		59	NA	
Drosophila melanogaster	50	br	FBgn0000210	FBtr0070267	3	1	7	140	X	1531143	1531161	TTCCCAATATCGATCCCTC		58	1554704	1554722	TTAGAGAACGCACGTTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	SNF1A	FBgn0023169	FBtr0070216,FBtr0070218	3	2	3	80	X	1270213	1270739	TGTACCAGGTCATATCGAC		58	1270782	1270801	CAATATAGTCGAACAGCTCC		57	NA	
Drosophila melanogaster	50	SNF1A	FBgn0023169	FBtr0070216,FBtr0070217,FBtr0070218	1	3	3	60	X	1271866	1271885	ATAATGCTCGAGGTATACCG		58	1271907	1271926	GATTGATGATCTTCCACTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3021	FBgn0040337	FBtr0070173	3	1	1	77	X	921170	921188	AGTTTCTGGACGATTACCA		58	921228	921247	AGAGGTCAAACTTAATGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3711	FBgn0040344	FBtr0070191	1	1	2	80	X	818946	819022	CTATGAAGGCAATATAGGAACC		58	818887	818905	ATGTCGCAGAAATCTTTGC		59	NA	
Drosophila melanogaster	50	CR41571	FBgn0085804	FBtr0114258	1	1	1	60	U	5607584	5607603	GGAGTTAGAGCTATTCTCGG		59	5607543	5607561	TGCATTCTCTGAAACTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40741	FBgn0085771	FBtr0114221	1	1	1	60	U	8864062	8864081	AGGTGTTGTAAGTGGTTGAG		59	8864103	8864122	AAGCAAAGGATAAGCTTCAG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40560	FBgn0085743	FBtr0114193	2	1	1	60	U	3558057	3558075	GATGGAATTTACCACCCAC		58	3558015	3558033	GATGTTTCCAAAGAGTCGT		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40947	FBgn0085540	FBtr0113953	2	1	1	162	U	8131646	8131664	TTCAGGACTCATTCAACCG		59	8131502	8131520	ATATAATTCACGCCACGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41429	FBgn0085648	FBtr0114092	1	1	1	60	U	2235768	2235786	TAGGTAGGTTTGAAAGCGC		59	2235726	2235744	TTCTTCACCAGCTGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41130	FBgn0069921	FBtr0100311	3	1	1	62	4	1223118	1223137	TAAAGCGTGTCCTTTACCAG		59	1223162	1223180	GTCATACAAAGTGGCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33521	FBgn0053521	FBtr0091471,FBtr0091472	2	2	4	191	4	1207180	1207198	TTCGGAAATGGATTACCCT		58	1208237	1208378	CTTCTCAGGTATTGTAGATCGA		58	NA	
Drosophila melanogaster	50	Eph	FBgn0025936	FBtr0089085,FBtr0089084	1	2	5	80	4	637967	638981	TCATTTAAACGTGACGACG		58	639022	639043	GCTTGATTAGGATCTTCATAGG		58	NA	
Drosophila melanogaster	50	Eph	FBgn0025936	FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086	3	4	5	110	4	640795	640889	GCTCAACAGATATCCAGGT		58	640961	640981	TATTATAGTGTCGAGTTGCCG		59	NA	
Drosophila melanogaster	50	Asator	FBgn0039908	FBtr0089108,FBtr0089109,FBtr0089107	2	3	3	80	4	499215	499233	AACAAACTCCCAAGTAGCC		59	498699	499173	AGCTTCGTATACTGTACATCC		59	NA	
Drosophila melanogaster	50	CG11539	FBgn0039859	FBtr0085868	3	1	1	68	3R	27441574	27441592	TGACCTTAGAAGAGGAGCA		59	27441524	27441542	CAATGAAGGTCAGCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34347	FBgn0085376	FBtr0112556	2	1	1	81	3R	27186209	27186229	TTACGAATGGTAGTGGATCTG		59	27186270	27186403	GTGCTTTGATAGTAAAGTCCC		58	NA	
Drosophila melanogaster	50	zwilch	FBgn0061476	FBtr0085777	1	1	1	93	3R	27037101	27037119	AGTTCCGCGAACTAAAGAC		59	27036965	27037045	ATCTCCTTGTCATCACACTG		59	NA	
Drosophila melanogaster	50	CG1544	FBgn0039827	FBtr0085755,FBtr0113311,FBtr0085756	1	3	3	86	3R	27027533	27027613	CGAAGACTTTAACATCCATCC		58	27027661	27027679	CAATCGATCTTGACTCCGT		59	NA	
Drosophila melanogaster	50	CG2246	FBgn0039790	FBtr0085677,FBtr0085676,FBtr0085674,FBtr0085678,FBtr0085675,FBtr0085673	2	6	6	81	3R	26421160	26421180	GGAGACTATTGTGGAGATCAG		59	26421038	26421117	ATTGTTGGCATCCTTTGTG		58	NA	
Drosophila melanogaster	50	CG2241	FBgn0039788	FBtr0085680	2	1	1	60	3R	26408510	26408528	TTCGAGAATGGTAAGGGAG		58	26408468	26408488	GAATATTATGGATGGAGCGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31524	FBgn0051524	FBtr0110860	2	1	2	93	3R	26339622	26339696	ATAAACCCGTGATTCATGAG		57	26339548	26339567	CTTATAGCTTCTGATGCGTC		58	NA	
Drosophila melanogaster	50	CG7911	FBgn0039735	FBtr0085606,FBtr0113308	3	2	2	94	3R	25829774	25829792	AGACCAAATGTCGAGTTCC		59	25829613	25829716	AAGTTCATCTCGACCTTGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG31036	FBgn0051036	FBtr0114571,FBtr0085501	2	2	2	80	3R	25736317	25736401	AAATCTGAACCCTACATCAGG		59	25736442	25736461	GTTAAAGAATCCAGCCTGTC		58	NA	
Drosophila melanogaster	50	CG31038	FBgn0051038	FBtr0085498,FBtr0085499,FBtr0085497,FBtr0085494	1	4	6	80	3R	25723358	25727914	GAAGGAAATGAACGGACTG		58	25727958	25727976	AACTCTTGGATCGATTCGT		58	NA	
Drosophila melanogaster	50	RpS8	FBgn0039713	FBtr0085489	2	1	1	204	3R	25688837	25688855	ATGAAGAAGTACCTGGAGC		58	25689241	25689259	GCAAGCTTATCTAGTGCCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Obp99c	FBgn0039682	FBtr0085463	2	1	1	93	3R	25511891	25511909	AGACTGGTGAGGAGATCAG		59	25511816	25511834	AAGATCAGGTTCTTCAGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cnx99A	FBgn0015622	FBtr0110909,FBtr0085438,FBtr0085437	2	3	4	115	3R	25142077	25142449	GTGAATCGGACTCATTCGT		59	25141980	25141999	TCTACAGTAGATGGTGAGGG		59	NA	
Drosophila melanogaster	50	CG1957	FBgn0027873	FBtr0085357	1	1	2	60	3R	24860402	24860420	GCTGCACACTATATCTGGG		59	24860439	24860462	GTCTATCTGTAGGATATAGCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34436	FBgn0085465	FBtr0112737	3	1	1	109	3R	24108560	24108578	ATAACATCAGCAAGCTGTG		58	24108706	24108725	ACATGGTAATCATCACTGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	bigmax	FBgn0039509	FBtr0085173	2	1	1	151	3R	23113435	23113519	CAAGTTTCAAGTGTTCCAGG		59	23113303	23113321	TACGACTGAGTATGTTGCG		59	NA	
Drosophila melanogaster	50	CG31076	FBgn0051076	FBtr0085079	2	1	1	68	3R	22815187	22815206	CAATTGGAAGTACTGATGCT		57	22815060	22815078	TCTGATCAGTCGCATTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14253	FBgn0039467	FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074	1	5	5	81	3R	22809875	22809893	GTATGCCTATGGAAGGCAG		59	22809935	22810014	CGGTAACTTAAAGATTTGGCTC		59	NA	
Drosophila melanogaster	50	CG5491	FBgn0039459	FBtr0085061	1	1	1	110	3R	22689532	22689550	CCGTGGGAATAGTTAACAC		57	22689624	22689642	ACTTGGAGCACTCAATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5484	FBgn0039450	FBtr0085037,FBtr0085039,FBtr0085038	3	3	3	107	3R	22544579	22544653	TATGCATAAGGATTGGTCCC		59	22544723	22544741	TATGTGATGTAGCCCATGG		58	NA	
Drosophila melanogaster	50	CG31082	FBgn0051082	FBtr0085022	3	1	1	60	3R	22412160	22412178	AGAAGGTAGTGTACCCTCC		59	22412198	22412220	CTCGATAGTGGAGTATATCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31437	FBgn0051437	FBtr0084834	1	1	1	60	3R	21209719	21209737	AATCAGGGAGGAAGATCCA		59	21209761	21209779	GTAATCTGGAACTTTGCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osbp	FBgn0020626	FBtr0084801	1	1	1	60	3R	20761661	20761679	GTACTTTAGTCGCGATGTG		58	20761619	20761640	CTCGTTGTCTTTGTTCATTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13617	FBgn0039201	FBtr0084641	2	1	1	91	3R	20343032	20343105	AGAATCATCAAGAGCCCTC		58	20343160	20343178	TTCATATCGAAGCCGTGAG		59	NA	
Drosophila melanogaster	50	CG13606	FBgn0039161	FBtr0084553	1	1	2	273	3R	19998831	20006029	ATTCTTAGTCACCATCGCC		59	20006400	20006418	GTTCGCATTACTTTGCTGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	kal-1	FBgn0039155	FBtr0084549	1	1	1	102	3R	19972454	19972535	AAGGAGAAGGTCTATGAACTG		58	19972927	19972945	TCAGTTTGCTGAACTCCAG		59	NA	
Drosophila melanogaster	50	CG33108	FBgn0053108	FBtr0084504	1	1	1	60	3R	19822898	19822918	ATTGTAGGTTATCTGGTGGAC		59	19822998	19823016	ATTTACCATGACGAGCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gdh	FBgn0001098	FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498	3	4	4	98	3R	19763339	19763461	AAGCTAAGATCATTGCCGA		59	19763259	19763277	TGTACAGATCGGGAATGAC		58	NA	
Drosophila melanogaster	50	CG13597	FBgn0039124	FBtr0084525	1	1	1	60	3R	19718675	19718695	CTGCACAACAAATACTACTGG		59	19718635	19718656	CGAATATCAGCTTGAAATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lsd-1	FBgn0039114	FBtr0084456,FBtr0084455	3	2	3	90	3R	19590398	19590480	CCCGAAATGATGTACTGGA		59	19590533	19590552	CGATTTGCTTGACAGAATCG		59	NA	
Drosophila melanogaster	50	CG31225	FBgn0051225	FBtr0084414	2	1	1	60	3R	19308085	19308105	CTTGTTTATCAGGCATACCTC		58	19308126	19308145	GATGTCCTTTCAGATTTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6921	FBgn0038985	FBtr0084262,FBtr0084261	3	2	3	86	3R	18380435	18380453	TAAAGATTGTCGAGGAGCG		59	18380567	18380586	GCATAGGTGAGCTCATTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CheB93b	FBgn0051438	FBtr0084090	2	1	1	128	3R	17235337	17235415	ATTACAACTCCGGGAACAG		59	17235507	17235525	ACCAGATTTGTCGAATGCA		59	NA	
Drosophila melanogaster	50	CG3301	FBgn0038878	FBtr0084101	1	1	2	91	3R	17100159	17100238	GCCTGTTGGAAGTAATACG		58	17100086	17100104	ATATGATATTGCACCGGCT		58	NA	InUTR
Drosophila melanogaster	50	CG17274	FBgn0038835	FBtr0083989,FBtr0083990	1	2	2	164	3R	16678290	16678432	CTTTGTTACAACAGGGAGG		57	16678144	16678162	GATTCAAATAGTCCACGCC		58	NA	
Drosophila melanogaster	50	CG17273	FBgn0027493	FBtr0083991	2	1	1	278	3R	16651604	16651624	GATAAGGTTCGTCCCTATGTC		59	16651282	16651366	GCCAATATCATTTAGCTGCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5191	FBgn0038803	FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905	2	5	5	89	3R	16396362	16396821	ATGTCGACAGGTAAATCCTC		59	16396873	16396891	ATCACGTTGTCTATCTCCC		58	NA	
Drosophila melanogaster	50	GluClalpha	FBgn0024963	FBtr0100127	3	1	4	102	3R	15579575	15583547	TGGCACAGATAATAAGGCC		59	15585992	15586010	GAAGGTTAACTGCACACTG		58	NA	
Drosophila melanogaster	50	CG5454	FBgn0038667	FBtr0083720	2	1	1	69	3R	14808953	14808971	GGAATGCCCTATATGCCTC		59	14808902	14808920	TGGGATTCATAATCGGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14304	FBgn0038629	FBtr0083639,FBtr0114497	2	2	2	80	3R	14419608	14419629	CATTACTGTGATCTCAATGGAG		58	14419482	14419568	GCAAGTTAAGGCAATCTGAC		59	NA	
Drosophila melanogaster	50	sr	FBgn0003499	FBtr0083543,FBtr0083542	2	2	2	62	3R	13953325	13953343	TATTCCCTCGTTCTTCGGA		59	13953369	13956126	TCGATGGAACCAGTAATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG17802	FBgn0038549	FBtr0083526	2	1	1	108	3R	13629371	13629588	CGTAACTTCCACTGTGAGG		59	13629281	13629299	TAGCACTCATTGCGATCAG		59	NA	
Drosophila melanogaster	50	CG31360	FBgn0051360	FBtr0083480	2	1	1	65	3R	13510991	13511009	ATTGGTGCCTTCCTATTGG		59	13511036	13511056	CATAGTGAAATTCTCCAGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17283	FBgn0038505	FBtr0083437	1	1	1	60	3R	13233695	13233716	ATAGAAGATCATTGGCAGTCAG		59	13233737	13233755	CCATGAAGAGCACTACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17477	FBgn0038479	FBtr0083418	1	1	1	60	3R	12952432	12952450	ACTGTGTCAAAGGATACCC		58	12952390	12952408	GCATAGCGAATTGTACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	abd-A	FBgn0000014	FBtr0083388,FBtr0083387	3	2	2	95	3R	12635875	12635893	GAAGAAGGAGTTACGAGCC		59	12635728	12635746	GATTTCATCGTCTCCTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083348,FBtr0083352,FBtr0083351,FBtr0083350,FBtr0083347,FBtr0083349	2	6	6	65	3R	12558920	12558938	GAGCCTACAAACAGGACTG		59	12558873	12558892	TCCAAATGTCTTTGTAGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14899	FBgn0038438	FBtr0083307	3	1	1	72	3R	12309016	12309035	CTATCCTACACTGTCCAACG		59	12308907	12308925	GTGCTCATTGAAGAGACGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14881	FBgn0038425	FBtr0083288,FBtr0083287	1	2	2	99	3R	12261004	12261022	ATTGTGTAACCTTTGCCTG		58	12261139	12261157	TATTTCCGGGTGATCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6045	FBgn0038349	FBtr0083151	1	1	1	80	3R	11371303	11371379	ATGAGTCCTATAAGATCATGCC		59	11371244	11371262	CGGCTTCCAATTCTAGGAG		59	NA	
Drosophila melanogaster	50	CG31392	FBgn0051392	FBtr0083088	1	1	1	89	3R	11175074	11175093	AATACTCTAGCGAACCTAGC		58	11175142	11175431	CCATCATATTGAATACTTGCCC		59	NA	
Drosophila melanogaster	50	CG4285	FBgn0038310	FBtr0083061	1	1	1	104	3R	11080021	11080225	AATCGAAAGGTTGATGCCT		59	11080293	11080311	TAAAGTCGGATTGCTTGGA		58	NA	
Drosophila melanogaster	50	CG7026	FBgn0038276	FBtr0083007	3	1	1	78	3R	10725440	10725458	TCAAGATCCTCATTGTGGA		57	10725380	10725398	TTGGAGGTCATGTAGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33331	FBgn0067628	FBtr0082998	1	1	1	61	3R	10712693	10712711	TCTTTACTTGGCAGGAAGG		59	10712733	10712754	GATTATCAGAAGGATTGACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	foxo	FBgn0038197	FBtr0082887,FBtr0082886	3	2	3	83	3R	9892800	9892818	ATTTACGAGTGGATGGTCC		59	9892865	9905076	TATGGAGTTCTTCCATCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	sqd	FBgn0086897	FBtr0082854,FBtr0082857,FBtr0082856,FBtr0082855	1	4	4	178	3R	9468818	9468901	AACGACTGAGAAGGAACTC		58	9468658	9468679	CCTTCTTGCTGTTGATTATGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Paip2	FBgn0038100	FBtr0082693	2	1	1	111	3R	8809504	8809522	ATTTACGTAGTGGACGACG		59	8809597	8809678	GTTGCAGTTCGTTCTTGTC		59	NA	
Drosophila melanogaster	50	Men	FBgn0002719	FBtr0082660,FBtr0082661	1	2	2	178	3R	8539997	8540015	TCTTGGTATTGCCAACCTG		59	8539781	8539799	AAGTATCGATGGGTTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14394	FBgn0038079	FBtr0113227,FBtr0114499	2	2	6	158	3R	8522009	8522181	CATAGTCATGCAGGTCCTG		59	8522300	8522321	GAGATGAACAGATTGATCATGG		58	NA	
Drosophila melanogaster	50	desat1	FBgn0086687	FBtr0082630,FBtr0082628,FBtr0082627,FBtr0082626,FBtr0082629	3	5	5	141	3R	8272219	8272237	ATTCTGAACGTAACCTGGC		59	8272402	8272421	AGACGTGATGGTAGTTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	pps	FBgn0082831	FBtr0082586	3	1	1	110	3R	8243598	8243616	GTCTTTGCTGAACAACTCC		58	8243689	8243773	AACACATTAATCCGTTCCAC		58	NA	
Drosophila melanogaster	50	Cpn	FBgn0010218	FBtr0082547	2	1	2	166	3R	7989482	7989501	CTCCAATTACAGCTCCAGAG		59	7989269	7989354	ATCTGGTTCCGTAGTTTCTG		59	NA	
Drosophila melanogaster	50	Lk6	FBgn0017581	FBtr0082535,FBtr0082534	3	2	2	80	3R	7581386	7581467	TATTGACACCAGTTGGCAG		59	7581324	7581344	TATCGTAATAGTGTGCCTCAC		59	NA	
Drosophila melanogaster	50	CG14718	FBgn0037939	FBtr0082426	2	1	1	60	3R	7527244	7527265	CGTCTACAAGAACAAGATAACG		59	7527284	7527304	ACTCACATAGGTTATAGTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Csk	FBgn0086903	FBtr0082447,FBtr0082446,FBtr0082444,FBtr0082448,FBtr0082445	1	5	5	83	3R	7460836	7460854	AAATCAGACATGTGGAGCT		58	7460710	7460789	GGCTAATGGAATTCTGGGA		59	NA	
Drosophila melanogaster	50	CG6782	FBgn0037912	FBtr0100465,FBtr0100462,FBtr0100461,FBtr0100464	2	4	4	67	3R	7386179	7386197	ATTTGTACAAGGGTGACGA		58	7386130	7386148	GATAGCTCCAAACACTCCA		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31278	FBgn0051278	FBtr0082319	1	1	1	60	3R	6533714	6533732	AAGGTGCTAAGGAAGTTCG		59	6533672	6533690	TGAGCGATACTCCAATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Best1	FBgn0040238	FBtr0082183,FBtr0114590	1	2	2	87	3R	5991953	5992985	CAAATTGCTGCTCAGATGG		59	5991884	5991905	GTTGATCGCATAGTAAATGGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Fmr1	FBgn0028734	FBtr0082200,FBtr0082198,FBtr0082199	3	3	5	193	3R	5930727	5930803	GTTTCGAATCAAGATCGCT		58	5930470	5930488	GAAGCTGCTGATCAATCTC		58	NA	
Drosophila melanogaster	50	mtTFB2	FBgn0037778	FBtr0082173	1	1	1	102	3R	5871965	5871983	CAAGCACTTGATCAACTCC		58	5872046	5872128	GGTGAGATGTATGTATATGGGT		58	NA	
Drosophila melanogaster	50	CG9471	FBgn0037749	FBtr0113211	1	1	2	79	3R	5597058	5597076	TATTATTGGAGGAACCGGC		59	5596942	5596960	ATAGCAATTTCACCGACAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8273	FBgn0037716	FBtr0082072	1	1	1	60	3R	5405104	5405122	GGTCAAGGACAAGGTTCTC		59	5405143	5405164	GGTAAGATCTTGAATAGTGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pum	FBgn0003165	FBtr0081994	2	1	5	107	3R	4982877	4982895	TTGGATTACATCACTGGCT		58	4906735	4924427	GAAACAGTTGTTGATTGTGG		57	NA	Nonspecific
Drosophila melanogaster	50	CG11980	FBgn0037652	FBtr0081962,FBtr0081963	2	2	3	101	3R	4830105	4830125	CCAAATAACCTTCAAGGAGAC		58	4830245	4830263	TAGTGACAGTAGACCAGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11980	FBgn0037652	FBtr0081962,FBtr0081963,FBtr0081964	2	3	3	60	3R	4830042	4830061	GTGCGATATAATTGTCGACG		59	4830082	4830102	GTGATCGTACAATTTCTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dsx	FBgn0000504	FBtr0081759	1	1	3	88	3R	3761545	3761563	GATGCCACTCATGTATGTG		58	3756395	3761493	TTATTTCCACTCGAGCCTC		59	NA	
Drosophila melanogaster	50	Mst84Da	FBgn0004172	FBtr0081584	3	1	1	300	3R	3191578	3191598	CCACCTTCAATAGTTAACACC		58	3191914	3191933	AAGTATTCCGACAGGTTTCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG1091	FBgn0037470	FBtr0081640,FBtr0081641	2	2	2	83	3R	2909961	2909979	GCGACATTTGTCTGAACAG		59	2909838	2909916	TATATTGAGTCAGTGGCTGTG		59	NA	
Drosophila melanogaster	50	Ccp84Af	FBgn0004778	FBtr0081695	3	1	1	61	3R	2515605	2515623	GAAGAGTCAGGTTGAGGAG		58	2515562	2515580	AATCGATCAGGGAGTACTC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1021	FBgn0037443	FBtr0081731,FBtr0081732	3	2	2	176	3R	2216940	2217037	TGCCAGAGACGATAATGTC		59	2216715	2216733	TGATTCTGCAAGTCCTTGG		59	NA	
Drosophila melanogaster	50	Pak	FBgn0014001	FBtr0081714,FBtr0114607,FBtr0081715,FBtr0081716	1	4	4	84	3R	2184960	2184978	ATTTCAGGACTTCCTCGAC		58	2185026	2185115	TAGGAAGGGATGCTTTAGC		58	NA	
Drosophila melanogaster	50	CG10999	FBgn0037381	FBtr0078634	3	1	3	102	3R	1640973	1640992	GATATGAAGACCTCAAGGCT		58	1643289	1643307	TTGACTTCGTGCTCATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Spec2	FBgn0044823	FBtr0078739	2	1	1	139	3R	1444208	1444226	AGACCAACTCGATACACTC		58	1443258	1443276	AAAGGTATGTCTGCTGCTC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	exba	FBgn0037346	FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745	3	7	7	85	3R	1423978	1423999	GGTTCTATTATTCGTAAAGGGC		58	1423648	1423932	CAGAACCGTTGACTAACCA		59	NA	
Drosophila melanogaster	50	CG2926	FBgn0037344	FBtr0078752	1	1	1	80	3R	1410390	1410904	CATCTGATAAGGATGATGACGA		59	1410331	1410351	GCAATGGTATATCCGTATCCT		59	NA	
Drosophila melanogaster	50	Hdac3	FBgn0025825	FBtr0078767	3	1	1	162	3R	1299663	1299750	CATTCAGTGCAATTCCGTG		59	1299519	1299537	TATGCATATGTCGCTGTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9853	FBgn0086605	FBtr0113192,FBtr0078949	1	2	2	96	3R	225235	225253	ATACCGACAACTTCCTGTG		59	225097	225175	ATGGTCCGTTGAATAAGGG		59	NA	
Drosophila melanogaster	50	CG32450	FBgn0052450	FBtr0078501	1	1	1	61	3L	22323189	22323207	CTGTTTGTGGTAGTTCCCT		59	22323232	22323250	CGCACATATTTGTACACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7448	FBgn0037143	FBtr0078473	3	1	2	107	3L	21943766	21943784	AAAGACAATAGCAGCTGAG		57	21943907	21943925	GGATTGGCTAGATAACCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5656	FBgn0037083	FBtr0078396	3	1	1	88	3L	21436827	21436949	CTGTCCAAGACTTATTGCG		58	21436757	21436775	AGATAGTTCGCCTTGATCC		58	NA	
Drosophila melanogaster	50	park	FBgn0041100	FBtr0078318,FBtr0078319	3	2	2	130	3L	21189209	21189302	ACCGATGAAGAAAGAGTCC		58	21189097	21189115	TCACGATGGACAGTAAAGG		58	NA	
Drosophila melanogaster	50	CG13255	FBgn0040636	FBtr0078263	1	1	1	99	3L	20831560	20831578	ATACTGGTCAATGTGGTCC		58	20831641	20831659	CCATGATGGAGGTCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13250	FBgn0037013	FBtr0078211	2	1	1	144	3L	20527502	20527523	CAGCAACTCTTTAAGATTCGAG		59	20527627	20528289	TATAGTTGACATTCGCCAGG		59	NA	
Drosophila melanogaster	50	CG6434	FBgn0036972	FBtr0074844	2	1	1	117	3L	20316062	20316080	GTACTGGATGCTGAAACCT		59	20315910	20315982	TGATTAGAAATGCGTCTCCA		59	NA	
Drosophila melanogaster	50	CG6981	FBgn0036945	FBtr0074821,FBtr0074820	2	2	2	97	3L	20182279	20182428	AACATAAGGGAGAGCTGTG		58	20182489	20182507	GTAACCCTTCCAGTAGTGG		58	NA	
Drosophila melanogaster	50	CG9451	FBgn0036876	FBtr0074979	1	1	1	88	3L	19492781	19492799	CTCCAGTGAGCACTTATCC		59	19492647	19492729	CACTTTAGCACCATTGGTG		59	NA	
Drosophila melanogaster	50	CG12519	FBgn0036872	FBtr0074930	1	1	1	165	3L	19465718	19465736	TATTCTGGCTATCGTTGCC		59	19465865	19465883	GATAACCTGGCTACTGGTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	nes	FBgn0026630	FBtr0075021,FBtr0075020,FBtr0075019	1	3	3	72	3L	19251666	19251684	ACATGACATTCCTCATGGA		58	19251439	19251457	ACCACTTTGGTGTAGAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4174	FBgn0036793	FBtr0100567,FBtr0075111	3	2	3	256	3L	18594641	18594659	GACTCCTATGCCATGACTG		59	18594292	18594372	AAATAGTGACCAAGTCCCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG32198	FBgn0052198	FBtr0075099	1	1	1	60	3L	18520143	18520161	CTTTGCTCTTGATGATCCC		58	18520185	18520203	CGAAGTTGGAGATGTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5147	FBgn0036775	FBtr0075136	2	1	1	81	3L	18101619	18101691	CAACACTTAAGGACACTTTGG		59	18101558	18101576	GGTTCCTCTAAACTGGCTG		59	NA	
Drosophila melanogaster	50	Adgf-B	FBgn0036751	FBtr0075193	2	1	1	60	3L	17742693	17742711	TCCAAGCTGATATACGCTC		58	17742651	17742669	TCACATATTGCTCGACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scaf6	FBgn0053522	FBtr0091474	2	1	2	158	3L	17030931	17030954	GGTCTCTATGAGTACTATAAGGTG		59	17030725	17030816	ACTCTTGGATCGATAAACTCG		59	NA	
Drosophila melanogaster	50	CG13029	FBgn0036670	FBtr0075335,FBtr0075336	3	2	2	63	3L	16853877	16853895	AGTGGGATTCGTTCTAGTG		58	16853919	16853940	GGGCAACATATAGAACATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sina	FBgn0003410	FBtr0075332,FBtr0075333	1	2	2	88	3L	16850362	16850380	CAATTCACAACTCGGACTG		58	16850432	16850450	TATGGTCACGTTAATGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dbp73D	FBgn0004556	FBtr0075347	3	1	1	176	3L	16722956	16722974	ATACTACTCCAAGGCAGAC		58	16722738	16722756	TCCTTTACATGACTGTCCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13036	FBgn0036626	FBtr0075416	2	1	1	73	3L	16384410	16384429	ATTATGGTGGCAATATGCCT		59	16384356	16384374	TCAGATTCGGATTCCAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdh	FBgn0011693	FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536	3	4	4	131	3L	16346821	16346839	ATCATTCCCGTTTACGGAG		59	16346644	16346662	CATGTCCGTCATTGTAGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4998	FBgn0036612	FBtr0075377	2	1	2	148	3L	16335188	16335206	AATGCTACCACTACTGCTG		59	16336895	16336913	CGGTTTCCATAATAGGCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13046	FBgn0036595	FBtr0075473	2	1	1	60	3L	16281275	16281294	GTCTCACACCTGGATTACTC		59	16281234	16281253	CGGGATAGTGATAGTAACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33985	FBgn0053985	FBtr0100030	2	1	1	60	3L	15519090	15519109	CTTTCTTCTACGGATGGGAC		59	15519049	15519067	CATTTGGCTTGACCTAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7945	FBgn0036505	FBtr0075599	3	1	3	122	3L	15516678	15516696	ATATAGAAGCCGATACGCC		58	15515586	15515662	CCAGTATGGTGACAAATCTC		57	NA	
Drosophila melanogaster	50	CG7841	FBgn0036502	FBtr0075604	3	1	1	88	3L	15499244	15499342	CGTTACATAAATGACTCCTGG		58	15499176	15499194	GCTACAGGTTTCTCAACAG		58	NA	Nonspecific
Drosophila melanogaster	50	CG13477	FBgn0036438	FBtr0075685	2	1	1	64	3L	14684761	14684779	CTCGAATTCCATCCGTACC		59	14684807	14684825	CATTGGATTATCGCCTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34039	FBgn0054039	FBtr0100094	1	1	1	173	3L	14555243	14555263	GCTATAGCTGTAGTGAAAGCA		59	14555491	14555509	TAGATATGTCTCGGACGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	stwl	FBgn0003459	FBtr0075728	3	1	1	60	3L	14398367	14398386	CTAATATACCCACAACCACC		57	14398326	14398345	TGGGTTATACTCTTTCCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100042,FBtr0100039,FBtr0100040	1	3	6	60	3L	14206287	14223279	ATGACTACGATTATAGGCTGG		58	14223301	14223319	TGTGTATCTGACAGATCGT		57	NA	DesignRelaxed
Drosophila melanogaster	50	Rgl	FBgn0026376	FBtr0075796,FBtr0075794,FBtr0075793,FBtr0075795	2	4	4	102	3L	13902205	13902224	AAACTTTAGTTCGCTCAAGG		58	13902061	13902142	GACTTCCATCCTTTCTTTAGG		58	NA	
Drosophila melanogaster	50	CG10638	FBgn0036290	FBtr0089322	2	1	2	93	3L	12494037	12494056	TGAAGGCATTATAGGCAAGG		59	12493889	12493981	TATGTCCCACAGCTTTGTG		59	NA	
Drosophila melanogaster	50	Adk1	FBgn0022709	FBtr0076018,FBtr0076017	2	2	2	122	3L	12193731	12193822	AAACCCTTACGATCAATGC		58	12193627	12193646	TAGCATTCTACTAGCACTGG		58	NA	InUTR
Drosophila melanogaster	50	l(3)j2D3	FBgn0011335	FBtr0075991	1	1	1	80	3L	12110258	12110352	CGCGAAAGTATAGAATAGAAGC		59	12110390	12110411	CTTGAAGCTTATGAAAGTGCTC		59	NA	
Drosophila melanogaster	50	TfIIEalpha	FBgn0015828	FBtr0076108	2	1	1	95	3L	11676422	11676440	TATGAAGGGTATGCGAGTG		58	11676499	11676585	TCGACATCAGGAATCTTGG		59	NA	
Drosophila melanogaster	50	CG7557	FBgn0036159	FBtr0076175	1	1	2	75	3L	11438751	11438769	CAGGAGACTTGTATGTGCA		59	11438871	11438889	TATCGAAAGATCCGTTCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8003	FBgn0036096	FBtr0076260	1	1	1	272	3L	10655695	10655713	ATGCCATCAATGGGATGAG		59	10656009	10656027	ATTACGCAGTCAGTTTGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16719	FBgn0036029	FBtr0076394	1	1	1	60	3L	9678958	9678977	TACATCAATTCCATTGCCGA		59	9678999	9679018	CATTCTTGAGGGCAATTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Klp67A	FBgn0004379	FBtr0076499	1	1	1	158	3L	9356597	9356615	TAGCAGCAGTACTTCTAGC		58	9356311	9356475	TTCGACTTGAGTAGAGCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Dhpr	FBgn0035964	FBtr0100531,FBtr0100532,FBtr0076531	1	3	3	88	3L	9128543	9128561	ATGAACCGTAAATGGATGC		58	9128613	9128631	TCTTGGGTCCACTTAAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7927	FBgn0027549	FBtr0076684	1	1	1	148	3L	8105677	8105696	ACATTAACAACCTAGCTGCA		59	8105807	8106122	CAAACCAGCTTCTTCTCCT		59	NA	
Drosophila melanogaster	50	CG8044	FBgn0035829	FBtr0076765,FBtr0076764	2	2	2	60	3L	7968872	7968891	GTTCCATCATGAATTCCGAC		58	7968757	7968777	GTCAGATTAGACTCCTGATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8562	FBgn0035779	FBtr0076854	3	1	1	119	3L	7392438	7392456	TATCTGCTGTATCCATGGG		58	7392599	7392617	ATAGGTGTACACCGTACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32387	FBgn0052387	FBtr0076920,FBtr0110848	2	2	3	94	3L	7157941	7158035	CTACAGACACAAGCAAAGTC		58	7157866	7157884	GAATGGTGGCATAATACCG		58	NA	
Drosophila melanogaster	50	Cpr65Eb	FBgn0035736	FBtr0076928	3	1	1	85	3L	7081581	7081599	ATTACCAGTTCGAGACGTC		59	7081514	7081532	GTAGTACTGTGATGAGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sse	FBgn0035627	FBtr0077125	3	1	1	120	3L	5653532	5653608	GGATTGCTTTGTATACGCAG		59	5653431	5653449	CAACATGCGTGTAGAATCG		59	NA	
Drosophila melanogaster	50	Sras	FBgn0029121	FBtr0077083	3	1	1	60	3L	5557643	5557661	CACTGCCCTATTGATTGGA		59	5557684	5557703	CGAATAGAAGCCAAATAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32244	FBgn0052244	FBtr0073325,FBtr0073324	3	2	2	104	3L	4505470	4505488	TGCTATCTTCTCAACAGCG		59	4505293	4505402	CAAACATCATGCGAACCTG		59	NA	
Drosophila melanogaster	50	CG11347	FBgn0035542	FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141	1	6	6	225	3L	4419447	4419465	TATTAGGTCCACCCAGGAG		59	4419654	4419748	GTTCTTGCTCTTCTGACTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG32240	FBgn0052240	FBtr0073336	3	1	1	173	3L	4381223	4381241	GAAGAACTGAATCAGTGCG		58	4381005	4381024	TGTGTTCTATAAAGGGTCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1268	FBgn0035521	FBtr0113137,FBtr0073230,FBtr0113136	3	3	3	98	3L	4262902	4262920	CTCACCAGAATCTGATCCG		59	4262981	4263000	CGATCAAGGGATTCATTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1265	FBgn0035517	FBtr0073228	3	1	1	83	3L	4255722	4255812	CAAACATGACTCGAATCTACAC		59	4255855	4255874	TAAGGAACGTCGAAATCAGG		59	NA	
Drosophila melanogaster	50	enc	FBgn0004875	FBtr0112845	1	1	4	81	3L	3834558	3834576	TTTCGAATGTGCCAATTGG		59	3834621	3836033	TGGTAAATGGAACCGTCTG		59	NA	Nonspecific
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133	2	5	11	192	3L	3578467	3593333	TTGCAGATATGGAGACTGG		58	3593487	3593507	CTGTTTGTTCAGAAAGACCTC		59	NA	
Drosophila melanogaster	50	CG12009	FBgn0035430	FBtr0073053	1	1	1	70	3L	3296308	3296385	TCAGTCAGGAATCGTTCAC		59	3296419	3296437	GTATCTGGAGCTATCCTCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32271	FBgn0052271	FBtr0073105	1	1	1	62	3L	3202674	3202692	CAAAGTGTCCACCATTGAG		58	3202630	3202648	GAGACCTTGATCAGATCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	prominin-like	FBgn0026189	FBtr0073120,FBtr0073119,FBtr0073118	1	3	3	80	3L	3119960	3120042	CTTGATCAATTAACCCACGC		59	3119899	3119920	CATTTCTGCCAAGGAATTACTC		59	NA	
Drosophila melanogaster	50	FR	FBgn0035385	FBtr0072980	3	1	1	60	3L	3009876	3009895	CTCCAATCTACTGATCACCA		58	3009916	3009936	GCCGAAGATGATGTAAATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9977	FBgn0035371	FBtr0073016	1	1	1	140	3L	2770144	2770162	CAAGGAATCCATCCTGGAC		59	2769958	2769976	GTGATGTACACAATGCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	msn	FBgn0010909	FBtr0072956	1	1	5	127	3L	2562835	2563827	CATGAAGCGCAAACTAGAG		58	2562726	2562744	AACGATCAAAGTCCCAGTC		59	NA	
Drosophila melanogaster	50	CG8960	FBgn0035315	FBtr0072872,FBtr0072871	3	2	2	205	3L	2197596	2197614	GATGATCTACTTGATGCGC		58	2197783	2197801	AGATCTGGTAGTGACCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dre4	FBgn0002183	FBtr0072864,FBtr0072865	2	2	2	81	3L	1873975	1874052	TGTCAAGGAAGTTACATACCG		59	1873914	1873933	AGCATTGTTTAGATTTGCGG		59	NA	
Drosophila melanogaster	50	CG12025	FBgn0035285	FBtr0072834	2	1	1	60	3L	1867416	1867434	ATCACGTCGTGTACATCTG		59	1867458	1867476	AGGTGATAGAAGTCGAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myo61F	FBgn0010246	FBtr0072675,FBtr0072673,FBtr0072672,FBtr0072674	3	4	4	85	3L	1326066	1326084	TCCTCGAGAACTACCAGAG		59	1326130	1326212	GCCAATGTAGGTATAGATCAGG		59	NA	
Drosophila melanogaster	50	CG13887	FBgn0035165	FBtr0072583,FBtr0072584	1	2	2	60	3L	838422	838440	TCTACATCTCTGGATTCGC		58	838464	838482	ATCAAGTTTACCAGTCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Reg-2	FBgn0016715	FBtr0072561	3	1	1	144	3L	606252	606270	CGATTATCCCAACTTTGGG		58	605661	605679	CTCAATTAGGTGGTTGGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	fwd	FBgn0004373	FBtr0072516,FBtr0072515,FBtr0072517	3	3	3	81	3L	307028	307046	AAGAACTTCGTCCAAAGCT		59	306901	306984	GAATGTTGCCATTATGCCTG		59	NA	
Drosophila melanogaster	50	mthl14	FBgn0052476	FBtr0072501	1	1	1	141	3L	249213	249231	CAATGCTCAAAGAGTTGGG		59	249336	249412	ATTCAGTTAGGCCTTGCAG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-841b	FBgn0083018	FBtr0113520	1	1	1	87	2R	17217783	17217801	CAAATGCACTCTGTGTCAC		59	17217851	17217870	GCATGGATAAGTCACATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gol	FBgn0004919	FBtr0072459	3	1	2	65	2R	20962765	20962786	CCTGAAGTTCTATGGATATGTG		58	20961069	20961088	GGATCAGGCTGATATTCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tina-1	FBgn0035083	FBtr0072411	1	1	2	86	2R	20828650	20828668	TATGAACATTGGCGTTGGA		59	20828515	20828533	TAGCGCAGACTAAGTAGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30165	FBgn0050165	FBtr0072361	1	1	1	90	2R	20304261	20304279	ATAACCAGTCCAGTGTCAG		58	20304090	20304207	TCACTGCTAGCTAACTTGG		58	NA	
Drosophila melanogaster	50	alpha-catenin-related	FBgn0029105	FBtr0072148	3	1	1	91	2R	19847526	19847544	AACGAGATCTCCATGATCG		58	19847599	19847675	GAGCTTTCGCATTTCTCAG		59	NA	Nonspecific
Drosophila melanogaster	50	apt	FBgn0015903	FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067	3	5	5	85	2R	19484451	19484469	TTTATGAAGATTGCCGCCA		59	19484517	19484598	ATGTACTGTGTCATTTCCGT		59	NA	
Drosophila melanogaster	50	CG17280	FBgn0034877	FBtr0072061	2	1	1	223	2R	19435823	19435841	TTCTAAACCACGCAATTCG		58	19436179	19436197	CAGGTAGTCGTACTTGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30415	FBgn0050415	FBtr0072030	3	1	2	107	2R	19273641	19273659	CTACAAGATCAGCAAGCTG		58	19273481	19273499	AAGACTAAGTTACTGGCCG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG3493	FBgn0034854	FBtr0072036	3	1	1	129	2R	19259693	19259777	GATGAAACCCTGGTATCCA		58	19259517	19259535	ATATCACCTTGACAAGCGT		58	NA	
Drosophila melanogaster	50	CG30259	FBgn0050259	FBtr0113365	1	1	2	60	2R	18591477	18591495	GGATATGTACGCCAATCTG		57	18591435	18591453	CGTACCAACTATCCTGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2852	FBgn0034753	FBtr0071933	3	1	2	161	2R	18533527	18533545	CTTTGACATCACCATTGGC		59	18532998	18533016	ATGAAGTCCTTGATGATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4294	FBgn0034742	FBtr0071941	2	1	1	80	2R	18489502	18489521	GCAGAAACGACATAAACTCC		59	18489309	18489460	TCGTCGATTAACCTGTAGTC		58	NA	
Drosophila melanogaster	50	wdp	FBgn0034718	FBtr0071849,FBtr0071852,FBtr0071851	2	3	4	132	2R	18188505	18195724	GTCTTATAGAAGATAAGACGCC		57	18188394	18188412	AACCACAATGAGGAACAGG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	GM130	FBgn0034697	FBtr0071789,FBtr0071790	3	2	2	131	2R	18013744	18013763	TTAAAGAGGCCAGTCAAGTG		59	18013577	18013595	TCTTCAGCTGGAATTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6613	FBgn0034694	FBtr0071758	2	1	1	95	2R	17993067	17993156	CACCACATTCAGATGTCTG		58	17993215	17993233	CGCTTACGTATTCGTTCAC		58	NA	
Drosophila melanogaster	50	Gr58a	FBgn0041239	FBtr0071728	2	1	1	60	2R	17867416	17867434	GCTCCTCTGAAGAAAGGAC		59	17867455	17867476	TATAGATGAGGTACCATCTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sdc	FBgn0010415	FBtr0071707,FBtr0071706,FBtr0071705	1	3	3	142	2R	17299915	17367605	TCAAGATCAGAAATCGGTG		57	17286794	17286815	GATCTTTCTCTAGATCTTCGTG		57	NA	
Drosophila melanogaster	50	CG18375	FBgn0034606	FBtr0071622,FBtr0071623	3	2	2	107	2R	17109401	17109419	TGAATATCCTGACAGCAGC		59	17109240	17109330	ACTGATTGCGGTACATCAG		59	NA	
Drosophila melanogaster	50	tud	FBgn0003891	FBtr0071582	3	1	1	89	2R	17072517	17072591	GGTCAATGTGACAAATGTACAG		59	17072638	17072659	GCACGATTATAAGGATTTGTCG		59	NA	
Drosophila melanogaster	50	bl	FBgn0015907	FBtr0086221,FBtr0086220	1	2	4	90	2R	16483146	16483164	TTCGCATACTGATTCCGAG		59	16483311	16485063	GTGGCTTTATACTGAGTCCT		58	NA	
Drosophila melanogaster	50	bl	FBgn0015907	FBtr0086219,FBtr0086221,FBtr0086220,FBtr0086222	1	4	4	66	2R	16493081	16493099	GTCATGATCCCAACAACAG		58	16493191	16493209	TTACCAATGATGGCACCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13424	FBgn0034520	FBtr0086218	1	1	1	196	2R	16445732	16445907	GAAACGCAGATCAAGATCTG		59	16446066	16446084	ATAATGGACTGAATGGGCG		59	NA	
Drosophila melanogaster	50	CG11041	FBgn0034481	FBtr0086310	3	1	1	70	2R	16034203	16034580	TGAATCAGCTCATGGTAGC		59	16034614	16034632	CATATCCGAAACCAAAGCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457	2	11	15	113	2R	15365201	15366256	TTCACTCTGGTCAAACCAG		59	15366332	15366351	AGAGTTTGGAGAAGAAGCTC		59	NA	
Drosophila melanogaster	50	Cyp12b2	FBgn0034387	FBtr0086609	1	1	1	83	2R	14643158	14643177	GAGCTTGAACTACTATCGCA		59	14643223	14643299	CATTCCTGACCCTGATCAG		59	NA	
Drosophila melanogaster	50	IM3	FBgn0040736	FBtr0086665	3	1	1	214	2R	14275692	14275710	GAAATTCCTATCACTCGCC		57	14275959	14275977	ATGGGCACTTGATTCTAGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4975	FBgn0034266	FBtr0086861	2	1	1	60	2R	13614841	13614859	TTCGAATAATGTGCTCCTC		57	13614883	13614901	GATAAGACCATGACCACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6424	FBgn0028494	FBtr0086887,FBtr0086886	3	2	2	122	2R	13592686	13593867	ATCGAGCAGAATTTGAACG		58	13592582	13592600	CTCAAAGTACAGCAGTCCA		59	NA	
Drosophila melanogaster	50	CG14479	FBgn0034228	FBtr0086952	2	1	1	68	2R	13390036	13390054	TTCCAGTTTCCTCTTCCAG		58	13389986	13390004	CATCAGTGTCTGTTTAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30460	FBgn0050460	FBtr0087011,FBtr0087012,FBtr0087009,FBtr0087010,FBtr0113378	2	5	5	109	2R	12955106	12955124	AGTTAAGCAGTCTCGATGG		59	12954944	12955033	ATAAGGTGAGTTGCTGCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	RhoGEF2	FBgn0023172	FBtr0086970,FBtr0086971,FBtr0086969	3	3	3	81	2R	12929165	12929184	GATCAAGAAGAATCCTAGCG		57	12929228	12929313	TTTATCATCCTGCTTGGTC		57	NA	
Drosophila melanogaster	50	CG30463	FBgn0050463	FBtr0113379,FBtr0113381,FBtr0087113	3	3	5	163	2R	12566519	12566537	CAACATTTATCCCGAGCTC		58	12562744	12565924	GCATCCAGTACTGATTTCC		57	NA	
Drosophila melanogaster	50	sli	FBgn0003425	FBtr0087304,FBtr0087302,FBtr0112831	1	3	5	137	2R	11773781	11773799	GACCGTGATATACGAGACG		59	11772979	11773607	TTGTTGGAGATGTCCAGTC		59	NA	
Drosophila melanogaster	50	fus	FBgn0023441	FBtr0087347,FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087348,FBtr0087343	2	6	6	60	2R	11550737	11550758	CCATATGGTTATCAATGCACAG		59	11550637	11550656	CAAGTCCATCTGGATAAAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG34442	FBgn0085471	FBtr0112746	1	1	1	84	2R	10254944	10255018	TTAAGAAGGTCAGGGTTTCC		59	10255063	10255083	CATTAACTTCACCCAGTTGTG		59	NA	
Drosophila melanogaster	50	pea	FBgn0086895	FBtr0087518	1	1	1	60	2R	10041689	10041708	AGGCTTAGTACACATCTCAC		58	10041731	10041749	TACCTCCGTTACATCTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18371	FBgn0033893	FBtr0087599	1	1	1	69	2R	9916438	9916456	TACTGAATATCGGCAGTCC		58	9916489	9916507	GAAGTGATCTCCTTGGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mip120	FBgn0033846	FBtr0087669	2	1	1	276	2R	9399927	9400012	TATGTAAATGCGTTGGGTG		58	9400252	9400270	ATCTGTGTCAGACTTTCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13326	FBgn0033794	FBtr0087779	1	1	1	131	2R	9017613	9017686	AATCAGACACTAGCGATGC		59	9017500	9017518	AAGATTCTCGCTCATCACG		59	NA	
Drosophila melanogaster	50	nemy	FBgn0033765	FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875	3	6	6	197	2R	8558847	8559072	AAGCGGATGAGGAAATCTG		59	8558668	8558689	GATCTCTGTACGCTTATAGTCC		59	NA	InUTR
Drosophila melanogaster	50	Iswi	FBgn0011604	FBtr0087842,FBtr0087841,FBtr0087843	1	3	3	92	2R	8527488	8527567	GCTATAAGAGCTTCTCCGC		59	8527623	8527641	GGTAATCAACGTGTTGCAG		59	NA	
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087832,FBtr0087836	2	2	8	102	2R	8505632	8505713	TCCTGAATACGATGGTCCA		59	8505779	8505797	CGAATAGCATTGACGTTCG		59	NA	
Drosophila melanogaster	50	CG30334	FBgn0050334	FBtr0087949	2	1	1	279	2R	8328587	8328605	TCTACATTGGACCCTATCC		57	8328326	8328344	TACGGAAATTGATAGCACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8858	FBgn0033698	FBtr0088008	3	1	1	125	2R	8083933	8084004	GCCAAGAGAAGTGAATCCA		59	8083826	8083847	CTCCGATACATCTTTCAAAGTG		59	NA	
Drosophila melanogaster	50	CG13188	FBgn0033668	FBtr0088039,FBtr0088040	2	2	2	81	2R	7837687	7843102	TATACAAGGAGCACATTCAGG		59	7843145	7843163	TCGAAGACGATCACTTTGG		59	NA	
Drosophila melanogaster	50	CG33472	FBgn0053472	FBtr0114575,FBtr0089862	1	2	2	85	2R	7332258	7333648	ATTAACAGCCGTTATCGGA		58	7334662	7334681	CATAGCAGTAAATCGATCGC		58	NA	
Drosophila melanogaster	50	deltaTry	FBgn0010358	FBtr0088124	1	1	1	62	2R	7243137	7243155	CTCCTTCAAGAACCACGAG		59	7243181	7243199	TTGATGATGGCAATGTCGT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1625	FBgn0033447	FBtr0088491	1	1	1	83	2R	5712621	5712704	GATAAGTACAAGGACATCCTGG		59	5712559	5712577	TATGGAACGACGTGTTTCC		59	NA	
Drosophila melanogaster	50	CG34033	FBgn0054033	FBtr0100088	2	1	1	61	2R	5708092	5708110	ATGCTTTACTGTCTTCCCA		58	5708135	5708153	TTACCGTTTGCCTCATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1902	FBgn0033434	FBtr0088532,FBtr0088531	1	2	2	77	2R	5492088	5492106	TTCGGAATGTCATGAAGCA		59	5492205	5492223	CCAATCCAATTGCCTTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1968	FBgn0033401	FBtr0088595,FBtr0088596	1	2	2	210	2R	5175120	5175194	CGGTGCTATTCAAATACGTC		59	5175367	5175385	AGCAAAGATAGGTTCTCCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	Pkn	FBgn0020621	FBtr0088602,FBtr0088601	2	2	6	81	2R	5155478	5171347	GATTCGTATTATCAGGGCG		57	5155415	5155433	GCAGATTCTCTGTGAAACC		58	NA	
Drosophila melanogaster	50	CG30345	FBgn0050345	FBtr0088584	1	1	1	82	2R	5037269	5037288	CATAGTAAGCCTCTTCCTGG		59	5037333	5037417	AAAGGTAGCCTGTAAACGT		58	NA	
Drosophila melanogaster	50	CG8172	FBgn0033362	FBtr0113058,FBtr0088667,FBtr0113057	1	3	3	118	2R	4895842	4895860	AATCGATGGGTGATAACGG		59	4895674	4895692	TACTCTTCGTGGTTTAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30356	FBgn0050356	FBtr0088717	3	1	1	61	2R	4616877	4616895	GGACATTCGATGCTAAAGC		58	4616834	4616852	AGAAACTGAAAGAACGGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8713	FBgn0033257	FBtr0088780	2	1	1	88	2R	3983738	3983817	GTTATGGTCGGGTATATCCT		58	3983868	3983886	ATAAGGCAGAAGTAGCTCC		58	NA	
Drosophila melanogaster	50	scra	FBgn0004243	FBtr0088911,FBtr0088912	3	2	3	191	2R	3480687	3480705	ATCCTGCCTCTATTTGCAC		59	3480860	3480935	TGGAATTGGAGCTGTTAGC		59	NA	
Drosophila melanogaster	50	CG2144	FBgn0033187	FBtr0088904	2	1	1	80	2R	3408122	3408199	ATCGGAGTGATTACTACACC		58	3408242	3408260	CATCGCCTTCTCTTAAAGG		57	NA	
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995	1	9	9	157	2R	3355133	3355208	AGAAGTTGTCATCAGCTCG		59	3354994	3355012	GTAGTAGTTGGTCAGCACC		59	NA	Nonspecific
Drosophila melanogaster	50	Tsp42Ek	FBgn0033133	FBtr0089031	3	1	1	101	2R	2931521	2931541	AATACATAGAGAAGTTCGCCG		59	2931604	2931723	AACACTCGTACACTGTCTG		59	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086202,FBtr0086199	3	2	11	88	2R	2763928	2764041	CAATTCACAGGACTCAACC		58	2763858	2763877	CGAGTAACATTGTGGATTGG		58	NA	InUTR
Drosophila melanogaster	50	Cyp6a2	FBgn0000473	FBtr0086133	1	1	1	64	2R	2667460	2667478	GTTTGGCTCAGATCATCAG		58	2667414	2667432	CTTCAGTGGGATCTCTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	phtf	FBgn0028579	FBtr0086125	1	1	1	80	2R	2630262	2630352	AAATAGTTGCATGGTACCAG		57	2630395	2630413	CCAATATCCTCTGTTCGAC		57	NA	
Drosophila melanogaster	50	Bap170	FBgn0042085	FBtr0086107	3	1	1	76	2R	2528471	2528489	ACAGAAGATAACCATGCCG		59	2528825	2528844	TTACAGTTGGTGAAACTGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Act42A	FBgn0000043	FBtr0086029	2	1	1	60	2R	1902663	1902681	TATCGTGACTAACTGGGAC		58	1902621	1902639	AAGCTCGTTGTAGAAAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3107	FBgn0033005	FBtr0086078,FBtr0086077	2	2	3	125	2R	979865	979885	GGTAGCGACATTTATGAATGC		59	979972	980040	AGGTTTGGTCTGAATACGG		59	NA	
Drosophila melanogaster	50	CG17715	FBgn0041004	FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246	2	6	6	98	2L	22742091	22742164	ATAATGATCATGGCGGGTG		59	22742226	22742244	ATCGCTTATGGTGTTTCCT		58	NA	
Drosophila melanogaster	50	CG17018	FBgn0039972	FBtr0085958	3	1	3	106	2L	22354958	22363437	GAATTATCCTGAATGCTGGC		59	22363506	22363524	GCGATAATGTCGATAGCTG		58	NA	
Drosophila melanogaster	50	CG6448	FBgn0032976	FBtr0113044,FBtr0085939,FBtr0113046,FBtr0085938	3	4	5	86	2L	22140896	22140914	GAGCATTTAGATCTTGCCG		58	22140962	22141605	GTAAACAGCATCTTGATCCTG		59	NA	
Drosophila melanogaster	50	Hr39	FBgn0010229	FBtr0081481,FBtr0081480,FBtr0081479,FBtr0081478	3	4	4	107	2L	21255223	21255241	TAGTTTGGCAGGAACTTCG		59	21255310	21255554	TCTACATCCATGATTTCCTGC		59	NA	
Drosophila melanogaster	50	CG31676	FBgn0051676	FBtr0081424	1	1	1	110	2L	20845512	20848558	GAAACTGGTGCAAGAAGTC		58	20848632	20848650	ATGTAGGACGATGTCTGGT		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	dia	FBgn0011202	FBtr0081411,FBtr0081410	2	2	2	92	2L	20765980	20765998	AAGTTTAGCGAGGTGATGG		59	20766131	20766149	GTACAGCTTCTCCATTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17472	FBgn0032868	FBtr0081382	1	1	1	60	2L	20634582	20634601	CTTAGTATTGGCGAATCTGG		58	20634692	20634713	CCTTTCGTGTTCATCATATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS18B	FBgn0032849	FBtr0081338	2	1	2	138	2L	20096894	20096912	GCTTACAAGCAAACCTACG		59	20096712	20096730	AAATGGGACAGGGATTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Catsup	FBgn0002022	FBtr0081143	2	1	1	60	2L	19043009	19043029	ACCACTATCACTATTCTGCTG		59	19043051	19043069	TAAGAATGGCAAAGTCACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL30	FBgn0086710	FBtr0081181	2	1	2	107	2L	19009006	19009024	ACAAGCAGACCTTGAAGAC		59	19008512	19008530	CCAGCATAGCGTAGTACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fas3	FBgn0000636	FBtr0081051	3	1	4	110	2L	18391267	18391286	ACAAGGATAATCAGGAGTCG		58	18391359	18392077	GCCAAACTATAGCCTTTGG		58	NA	
Drosophila melanogaster	50	CG31785	FBgn0051785	FBtr0081044	2	1	1	111	2L	18124480	18124498	GTTCATATGTCCGGTAGCC		59	18124320	18124405	CATCATTTGTGTCTGTCGC		59	NA	
Drosophila melanogaster	50	Rpb11	FBgn0032634	FBtr0081011	1	1	1	83	2L	17409898	17409916	ATTCATGAACGCCATAACC		58	17409771	17409789	TCCTTCTTCTCCTTGATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ca-alpha1D	FBgn0001991	FBtr0090004	2	1	4	89	2L	16181895	16182782	GAGTACAACTCTTTAAGGGCA		59	16182893	16182912	CATAGACCAGATAGGTTCCG		59	NA	
Drosophila melanogaster	50	mol	FBgn0086711	FBtr0080676,FBtr0111014,FBtr0111015	2	3	5	98	2L	14992318	14992336	TTAGTCATCTTTCCGGGTG		58	14984074	14984205	CAGGCGAGTGATTAATATGAC		58	NA	
Drosophila melanogaster	50	CG33515	FBgn0053515	FBtr0091457	1	1	1	80	2L	14922994	14923014	GATGTTTACTTCGAGTGTCAC		58	14922083	14922955	CTCCAGATGAATACCATTATGC		58	NA	
Drosophila melanogaster	50	CG18420	FBgn0028866	FBtr0080687	2	1	1	80	2L	14796076	14796162	AATACCACAATCGTTGTTCG		58	14796015	14796033	GGTCCTATTCACTTGATGC		57	NA	
Drosophila melanogaster	50	Adhr	FBgn0000056	FBtr0100187,FBtr0006151	1	2	2	80	2L	14617635	14618079	AATATAGCGAAACTGGCCA		59	14618123	14618141	GGTACTCGGCTTTATCGAC		59	NA	Nonspecific
Drosophila melanogaster	50	smi35A	FBgn0016930	FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289	2	5	5	90	2L	14195795	14195814	CGGATGGATCTCATAATGTC		57	14189225	14195742	AGGTTCAAGCTCATTAGCT		58	NA	
Drosophila melanogaster	50	CG6734	FBgn0032395	FBtr0080312	1	1	1	72	2L	12014923	12015004	CACTACCAGCTCAAACCTC		59	12014869	12014887	TTGCATAGACCAGAGATGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Cry	FBgn0005664	FBtr0080281	1	1	1	60	2L	11945128	11945148	GAGATGATAACAACGATGACG		58	11945170	11945188	TAATCCTCGTTGGAATTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mre11	FBgn0020270	FBtr0080213	2	1	1	60	2L	11284100	11284118	TGTGACAGTCAGTAGTACG		58	11284208	11284227	CATAAGGCTACTAAGGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16833	FBgn0026147	FBtr0080152,FBtr0080150	2	2	3	83	2L	10990774	10991068	ATAACATACTCTCGGAACGC		59	10991114	10991132	CACGGTTGTAGAAGTACGA		59	NA	
Drosophila melanogaster	50	Stam	FBgn0027363	FBtr0080143	3	1	1	251	2L	10859430	10859448	ACAAGGTAACGACCAATCC		59	10859722	10859740	TTTCAGCCCAGTTCTTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34161	FBgn0085190	FBtr0112352	3	1	1	176	2L	10581520	10581538	TTTAGTTGCCAATTCGAGG		58	10581193	10581269	CAGCCAGTATTTCATATCAGTC		58	NA	
Drosophila melanogaster	50	Trim9	FBgn0051721	FBtr0080096	1	1	1	83	2L	10620162	10620309	TCAGGATACTCAAGGACCA		59	10620356	10620374	GAGCTTCAATGCAGAACTG		59	NA	
Drosophila melanogaster	50	CG5676	FBgn0032200	FBtr0080086	1	1	1	80	2L	10255130	10255149	GATAAGAGCGTGGATAAGCT		59	10255006	10255088	TCTTTCGGTCTTATCCTTCC		58	NA	
Drosophila melanogaster	50	obst-B	FBgn0027600	FBtr0079934	3	1	1	154	2L	10037272	10038228	CAAGCTACAAACACCTCAG		58	10038346	10038364	TCTTGGGATTGAAGACCAG		58	NA	
Drosophila melanogaster	50	CG31712	FBgn0051712	FBtr0079896	1	1	1	241	2L	9937422	9937440	AGACAATCGAAGAGGAAGC		59	9935531	9935549	AATTTCTTCGAGCTCTTCG		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG3759	FBgn0032116	FBtr0079807	1	1	1	80	2L	9420815	9420833	GTACTCTTAACAGCACTGC		58	9420875	9423309	GCAGATGGTATTATCATCTGC		58	NA	
Drosophila melanogaster	50	CG34398	FBgn0085427	FBtr0112648,FBtr0112649	1	2	2	85	2L	8927410	8927428	CATAGATAGTGCCGACGTC		59	8927477	8927560	TGGTGATTCCACTATCCCT		59	NA	
Drosophila melanogaster	50	d	FBgn0086896	FBtr0079680,FBtr0079678,FBtr0079679	1	3	3	116	2L	8483309	8483327	TTTGACCTAAACGCATCCA		59	8483407	8483574	GCTGTGATTCTTCGATGTC		58	NA	
Drosophila melanogaster	50	CG17294	FBgn0032032	FBtr0079651	3	1	1	156	2L	8377782	8377853	ATGATTGGAGATGATGCCA		58	8377973	8377991	TAATCCAATCGACAGCCTC		59	NA	
Drosophila melanogaster	50	Pp2A-29B	FBgn0005776	FBtr0005088,FBtr0100533	1	2	2	92	2L	8367166	8367184	AGTTGATTCCCTTCCTCAC		58	8367238	8367320	CAACGAGACTAGTAAAGTTGC		58	NA	
Drosophila melanogaster	50	CG7840	FBgn0032014	FBtr0079598	2	1	1	60	2L	8306313	8306331	AGCAAATACTCTACCTCGG		58	8306355	8306373	ATGTTACTGGCATACTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7367	FBgn0031976	FBtr0079547	1	1	1	78	2L	8028018	8028036	ATCAAGTTCGAGCTGTACG		59	8027884	8027905	GCGGAAACTCAAAGTTATTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14535	FBgn0031955	FBtr0079564	2	1	1	115	2L	7847852	7847870	CATATCCTTTGTGTCCAGC		58	7847615	7847633	GTTGGGAGGTGAAGATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7214	FBgn0031940	FBtr0079499	1	1	1	76	2L	7744200	7744218	GAACTCTGTAAGTCGGGAG		59	7744142	7744160	GTGATACTGCCATCCATCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	TepIII	FBgn0041181	FBtr0079477	3	1	1	103	2L	7706843	7706926	AATGATAGACCCACTGTAAACC		59	7706990	7707008	AGTATAATATCGCCGCGAC		59	NA	
Drosophila melanogaster	50	SA	FBgn0020616	FBtr0079349	3	1	1	83	2L	6953652	6953670	CTACTGCAAATTGGTGGTG		59	6953717	6953797	TCGTTGTAGCACTTAACGT		59	NA	
Drosophila melanogaster	50	CG10354	FBgn0031868	FBtr0079345	1	1	1	60	2L	6909273	6909292	AAGAAGTGCGTTTACAAGAC		58	6909314	6909333	GGTCAAGATTTACATCTCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11323	FBgn0031854	FBtr0079305	1	1	1	120	2L	6737673	6737692	AGAATTTCTATCCCTGGCTC		58	6737521	6737591	CGATCGATAACAACCTTGAC		58	NA	
Drosophila melanogaster	50	retm	FBgn0031814	FBtr0079272	3	1	1	117	2L	6451704	6451723	ATCCAAGTTCCTGTTCTACG		59	6451003	6451624	GTGAATCATGGTCTTGCAC		59	NA	
Drosophila melanogaster	50	dsf	FBgn0015381	FBtr0079145	2	1	1	275	2L	5928358	5936144	CATGAACAAGGATGCTGTG		59	5936383	5936401	TGCGTATAGTTGAACGAGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15634	FBgn0031621	FBtr0077378	2	1	1	60	2L	4688104	4688122	GAAGGGTAATCCTCTGGTG		59	4688145	4688164	GTAGGCATATAGGATGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tim	FBgn0014396	FBtr0114526,FBtr0077564,FBtr0077565,FBtr0100349,FBtr0077567,FBtr0114527,FBtr0100350,FBtr0077566	2	8	8	81	2L	3503185	3503261	ATGAAGATGAGGACGAAGTG		59	3503123	3503144	GGTTGTTGTGTTAAGTTTAGGG		59	NA	
Drosophila melanogaster	50	lilli	FBgn0041111	FBtr0077634,FBtr0077633,FBtr0077632	2	3	3	129	2L	2947320	2947338	AGAAGTCCTTTCTTGGTCC		58	2947431	2947622	TTGTTGACATCCTTCTCCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG34314	FBgn0085343	FBtr0112512	2	1	1	60	2L	2574460	2574480	CTCCATCAATTTCTGAAGCAC		59	2574420	2574441	CCTCTTTCTTAAGGATCTTCTC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34174	FBgn0085203	FBtr0112365	3	1	1	103	2L	2214846	2214865	GATATGAGAAGGAGGCTCTG		59	2215057	2215078	GGGAAATTCCCATAAAGTTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Got2	FBgn0001125	FBtr0077868,FBtr0100359,FBtr0077867	1	3	3	255	2L	1986023	1986041	TTCAAGAAGGACACCAACC		59	1985662	1985680	CAGTTCCACTGATGGACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14346	FBgn0031337	FBtr0077926,FBtr0077927	1	2	2	173	2L	1368392	1368410	GGACACCGAGATTTACCTG		59	1368597	1368615	GTTAGCTCGATCACAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	smi21F	FBgn0016926	FBtr0077988	3	1	2	208	2L	1118728	1118748	GGTTAATGTTAATGTCCAGGC		59	1117491	1117509	GATCGACATATTGGCTGCT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Pi3K21B	FBgn0020622	FBtr0078132	2	1	1	89	2L	299872	299892	AAGCCGGAATTACAGATACTG		59	302050	302068	CATCTTCAGATCGTCGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	3	7	8	167	2L	119224	119296	ATAATGCAGACTGATGTCCTG		59	119020	119038	TTGAGCCATGGTGTTTAGG		59	NA	
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089428	1	1	10	153	2L	110848	110867	AGCACATTGGTTATGATGAC		58	111110	111917	GAAATCGAAACCTGGTCAC		58	NA	
Drosophila melanogaster	50	CR41506	FBgn0085789	FBtr0114242	3	1	1	109	YHet	338145	338235	TGCTAAACTACAACTCACCC		59	338307	338325	GTAAGTCCTTCTCACGAGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG12576	FBgn0031190	FBtr0077366,FBtr0077365	1	2	2	62	X	21879091	21879109	TATATCCGGATCAACGCTG		59	21879047	21879065	TACTTGGTGGAGACTAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fliI	FBgn0000709	FBtr0077192	3	1	1	110	X	21214577	21214596	ATTGTGTACGTGTGGATAGG		59	21214667	21214810	GTTGAGAATCTGTAAGCTCAC		58	NA	
Drosophila melanogaster	50	CG33487	FBgn0053487	FBtr0089464	2	1	1	70	X	20088975	20089075	TGATGGCCATAGTTGAGTG		59	20088923	20088941	ATTCATGGCCTTGTACAGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pros28.1	FBgn0004066	FBtr0074210	2	1	1	161	X	16170851	16170935	CATAACCAGATTCATTGCCC		58	16171059	16171077	GCGTTAGCCTTATACTCGT		59	NA	
Drosophila melanogaster	50	CG5347	FBgn0030578	FBtr0073936	1	1	1	60	X	14671177	14671195	TGTCCAGGATATTTGTCCA		57	14671219	14671237	TGGATACGAGCACTTACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32595	FBgn0052595	FBtr0073941	1	1	1	73	X	14612769	14612787	TATGTCCGATATCCATGCC		58	14612655	14612732	CATGGATGGATTCCAGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gd	FBgn0000808	FBtr0073583	1	1	1	80	X	11880505	11880523	TCCCGACTTTAACAGTCAG		58	11880321	11880463	GTGTTAAATCGAACTTCGTCC		59	NA	
Drosophila melanogaster	50	CG11756	FBgn0030290	FBtr0073450	3	1	1	92	X	11242515	11242533	GCTACATCGTAAATGTGCC		58	11242589	11242607	GTTTGTTTACTGCGTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	btd	FBgn0000233	FBtr0071379	1	1	1	113	X	9589440	9589898	GAAGTCAGTTTCCATATGCC		58	9589974	9589992	AACTCCATGGCTGATAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	APC7	FBgn0029879	FBtr0070947,FBtr0070946	1	2	2	61	X	6492972	6493060	TATTACAAGGCATTGCGTC		58	6493085	6493103	AATAAACGTAGTCCTCGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Rpt4	FBgn0028685	FBtr0070929	1	1	1	89	X	6184929	6184947	GAGAACGATCTAAAGGCCC		59	6184795	6184879	GGCCTTCACAATGAATTTATCC		59	NA	
Drosophila melanogaster	50	Tre1	FBgn0046687	FBtr0070848	2	1	1	89	X	5568181	5568268	AATCGCAACTACAGAGTGG		59	5568110	5568129	ATAGTTTCTACTCGGCATCG		59	NA	
Drosophila melanogaster	50	CG7024	FBgn0029722	FBtr0070712	1	1	1	69	X	4599660	4599678	AGAAATATGCTCTGCAGGA		58	4599711	4600047	ACTTGAACGTGTTCTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34335	FBgn0085364	FBtr0112537	1	1	1	120	X	3440109	3440127	ACAGTGTATCAAGGGTTGG		59	3440007	3440025	GTCTCAACACATTGGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10793	FBgn0029656	FBtr0070536	2	1	1	60	X	3210168	3210186	ATGGATACTATGCGAGTGC		59	3210126	3210144	TCGTATTCGTCGGTTAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4199	FBgn0025628	FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333	2	4	6	110	X	1965424	1965442	CAAGGAGTACAAGACCACG		59	1962396	1962414	GACATGGTTGTACTGGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3719	FBgn0024986	FBtr0070233	2	1	1	80	X	1273394	1274177	TCAGAAGGTGATCAACAGC		59	1273332	1273350	GGCGTGAGTATCTTACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SP71	FBgn0029128	FBtr0100136,FBtr0100135	1	2	2	80	X	94412	94494	CTATGATGTTTCTGTTCACTGC		59	94535	94553	TAAATGCGTCCATTGAACG		58	NA	
Drosophila melanogaster	50	CR41590	FBgn0085807	FBtr0114261	1	1	1	60	U	7400302	7400320	TCTCGAATCTATGGGTGGT		59	7400344	7400362	AACCAGACAAATCACTCCA		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-2442b	FBgn0082988	FBtr0113581	1	1	1	94	3R	1424239	1424257	CAACAACTCAATCGGTGTC		59	1424163	1424181	AATCTTTAGATTGCTGGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR33294	FBgn0053294	FBtr0113460	2	1	1	96	3R	21527	21602	AACAGTAATCAAACAGCTGG		58	21660	21679	ATATCTGACAGTAATGCGCA		59	NA	
Drosophila melanogaster	50	Map205	FBgn0002645	FBtr0085875	2	1	2	98	3R	27892129	27892147	ACATCTGGTTGAAGACACC		59	27884866	27892067	TTCTGTAGAGGAGCTTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1542	FBgn0039828	FBtr0085757	1	1	1	226	3R	27039468	27039544	GAACGATGTGACCAAACTG		59	27039734	27039752	GCATCTCCCTCTTGAAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9717	FBgn0039789	FBtr0085679	3	1	1	71	3R	26410832	26410850	GTCTTCATCCTCTACCAGG		58	26410588	26410798	TTTCAGACCAGTAGTTGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34299	FBgn0085328	FBtr0112495	2	1	1	103	3R	26075486	26075505	ATCAGTGGAAAGGAATCCAG		59	26075630	26075999	GGGTCTTCTAAATTGGATTTGC		59	NA	
Drosophila melanogaster	50	Mlc2	FBgn0002773	FBtr0089746	1	1	2	81	3R	25999049	25999130	TCCAACTCATGGATATCGC		59	25998986	25999004	AACTGGGTGAAGTTGATCG		59	NA	
Drosophila melanogaster	50	CG34298	FBgn0085327	FBtr0112494	1	1	1	60	3R	25825815	25825833	AGATAATGTTCCCAGCAGC		59	25825857	25825936	CATGTTGCTCACATTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12068	FBgn0039695	FBtr0085481	1	1	1	60	3R	25620713	25620731	CAGCTAAGGGACATACTGG		59	25620755	25620773	CATTGTTTATCAGTGCCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15506	FBgn0039686	FBtr0085456	2	1	2	76	3R	25547135	25547153	GATTGACGCCAAATGAGAG		58	25547402	25547421	TTCATATGGAGCATAGCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7582	FBgn0039681	FBtr0085464	2	1	1	112	3R	25506778	25506858	TCAAGAAGGAATACCGTCG		59	25506684	25506702	TCCAAAGGAGATCATTCCG		59	NA	
Drosophila melanogaster	50	CG18110	FBgn0039677	FBtr0085449	2	1	1	82	3R	25496357	25496375	GATGTGTACTTCCAGGAGG		59	25496419	25496497	CCATAGGAAACCATTAAGTCG		58	NA	
Drosophila melanogaster	50	ppk21	FBgn0039675	FBtr0085448	3	1	1	100	3R	25492256	25492332	AACTACTAGCTAGCTTTGGTG		59	25492394	25492412	CAAATAGAGGCCGATGGAG		59	NA	
Drosophila melanogaster	50	DopR2	FBgn0015129	FBtr0085467	1	1	2	237	3R	25484774	25484793	GAAATTCAATTTGGACCGCA		59	25467946	25467964	TTTCATGTCCTTCAGCAGG		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG11828	FBgn0039616	FBtr0085338	3	1	1	99	3R	24749510	24749529	TGAAGAGAAATTGGATCCTG		57	24749591	24749665	TGGTAAATCATGCATAGCG		57	NA	
Drosophila melanogaster	50	Apc	FBgn0015589	FBtr0085351	3	1	1	207	3R	24662201	24662279	TACTGAGTCAGGCTATTGC		58	24662012	24662030	TTAGAATCGCTAGAGTCCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG6283	FBgn0039474	FBtr0085151	2	1	1	64	3R	22846368	22846386	TCTTCAGCTACGATAAGCC		58	22846322	22846340	GATGGACTCTACGTAGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17192	FBgn0039472	FBtr0085153	2	1	1	89	3R	22843901	22843976	TATTAGTAGCGGGTAATGCC		59	22843831	22843849	ACTGAAATGTGCCATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31075	FBgn0051075	FBtr0085080	1	1	1	100	3R	22813029	22813047	ATGAGTTCGTTGATTCGGT		59	22812876	22812967	GATATCAGCCTTATCTCCCTC		58	NA	
Drosophila melanogaster	50	Lnk	FBgn0028717	FBtr0084937,FBtr0084935,FBtr0084936	2	3	3	109	3R	21717659	21717678	ATGGCTACGATAATGGTCAG		59	21717750	21718182	CACTTCGTTGCAATGTCTC		59	NA	
Drosophila melanogaster	50	CG5107	FBgn0039342	FBtr0084879	2	1	1	60	3R	21331568	21331587	TGCCACCAATAAAGTTACAG		58	21331609	21331628	GATGCAGACATCAATGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11836	FBgn0039272	FBtr0113284,FBtr0084767,FBtr0084768	1	3	3	139	3R	20897386	20897466	AACTGTGACTGTGATTGTG		57	20897569	20897587	TTCGTCAGTAAGGATCCTC		58	NA	InUTR
Drosophila melanogaster	50	niki	FBgn0045980	FBtr0084737	3	1	1	105	3R	20649804	20649878	AACAAAGGGTACTCCTATGAG		58	20649719	20649737	ATTCCAACTCCATGGACAC		59	NA	
Drosophila melanogaster	50	CG13627	FBgn0039217	FBtr0084686,FBtr0084687	2	2	2	101	3R	20541277	20541295	TTAAGTACGAGAAGCCCAC		59	20541470	20541488	TGTAAATGGGTGCAAAGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13616	FBgn0039200	FBtr0084618	1	1	1	169	3R	20219089	20219168	AACATGGGTTTCAATGGTC		58	20219301	20219319	TACTGATGATGGGCTTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6204	FBgn0039165	FBtr0084555	2	1	1	80	3R	20020755	20020834	AAAGGAGGATTGCCTAAGTG		59	20020877	20020895	TGGAACATGATCAGTGGTC		59	NA	
Drosophila melanogaster	50	Miro	FBgn0039140	FBtr0084596	2	1	2	68	3R	19861354	19861372	AACTGTATACCAAGCTGGC		59	19861017	19861035	TGTAGAACAGTATCCAGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13830	FBgn0039054	FBtr0113272	1	1	1	87	3R	18907609	18907627	CAAGAAGCGTGAAATCTGC		59	18907430	18907561	TATCTCATCACGATTCTTGTGG		59	NA	
Drosophila melanogaster	50	sav	FBgn0053193	FBtr0084356	3	1	1	127	3R	18884837	18884855	TTCAACATGTTTAGCCTGC		58	18884655	18884674	TTCTTCTCGAGTATCAAAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6985	FBgn0039017	FBtr0084308	3	1	1	98	3R	18568388	18568406	AGGAGTTGCAGTTCTATGG		58	18568467	18568545	CCGCTAGATTATTAGATGCG		58	NA	
Drosophila melanogaster	50	CG34376	FBgn0085405	FBtr0112608	1	1	2	214	3R	18283159	18283177	TTACTCCAAGAGCTTTGCC		59	18284198	18284216	ATATGATCCTGCCCAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13855	FBgn0038960	FBtr0084225	1	1	1	95	3R	18233913	18233987	TGAACTAAGATTACCGCGT		58	18234046	18234064	ATCTTGTAGTGATCTCGCG		59	NA	
Drosophila melanogaster	50	CG17267	FBgn0038821	FBtr0114503,FBtr0083931	1	2	2	63	3R	16564042	16564326	TTGGCTCCAGAAACTATCC		58	16563997	16564015	CTTCTGTATCCACCACGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TFAM	FBgn0038805	FBtr0083949,FBtr0083948	2	2	2	61	3R	16401899	16401917	GAGAAGGAGGTCTACATGC		59	16401332	16401875	GAAATCGCTTTCCTGTAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5558	FBgn0038684	FBtr0083747	2	1	2	61	3R	14987533	14987553	GACTGCTAAATTCCATCAGAG		58	14986927	14986945	CACATATCGAGGATTGGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32856	FBgn0052856	FBtr0083239	1	1	1	70	3R	11790837	11790855	ATCCAGAAGAAACTCGACC		58	11790731	11790803	AGCTCCTCTACCTTTAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rec	FBgn0003227	FBtr0083193	1	1	1	125	3R	11656165	11656183	AAATCCGGTCCTAAACGAG		59	11650575	11656076	ATTATCGCAAGAAGTTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	btsz	FBgn0053555	FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530	2	5	5	100	3R	10634158	10634176	ATAAGCTGAGTGCTTTGGA		58	10634011	10634096	TAGATACACCTTAACGTAGGG		58	NA	
Drosophila melanogaster	50	CG9918	FBgn0038201	FBtr0100131	2	1	1	92	3R	9926421	9926528	ATAATGCAGAATCCGACGA		58	9926347	9926367	GAGTGAGTTCGAGTTTATCAG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	mRpS21	FBgn0044511	FBtr0082764	3	1	1	118	3R	9207344	9207362	CTGTTAAATCGCGTCTTGG		59	9207185	9207204	TAAATGGCCTTGCATTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DDB1	FBgn0027049	FBtr0082709	1	1	1	81	3R	8881939	8881960	GATGGAGATCTAATTGAGAGCT		59	8882002	8882082	TCAGTGTCAACTCCAATCC		59	NA	
Drosophila melanogaster	50	CG11670	FBgn0038114	FBtr0113230,FBtr0113231	1	2	2	82	3R	8869501	8869519	AGTCGTAAACACTATCGCT		58	8869562	8869652	GTATAAACACCTGGAAGTTCAC		58	NA	
Drosophila melanogaster	50	Men	FBgn0002719	FBtr0082660,FBtr0082661	2	2	2	178	3R	8539997	8540015	TCTTGGTATTGCCAACCTG		59	8539781	8539799	AAGTATCGATGGGTTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	scpr-C	FBgn0037879	FBtr0082351	2	1	1	107	3R	7052001	7052019	AAGAACCGTTATGGAGCTG		59	7052090	7052108	ATTCCATGCCTACATCGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	fau	FBgn0020439	FBtr0082308	2	1	4	64	3R	6599528	6599546	GTACAACTACAGCACAGAG		57	6599482	6599500	AAGAATAGCTGTAGCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5359	FBgn0037773	FBtr0082215	1	1	1	181	3R	5826083	5826305	ACTTTAATGGGTAGGCACC		59	5825920	5825938	AAGCCCATTCAGATCTCTG		59	NA	InUTR
Drosophila melanogaster	50	CG16749	FBgn0037678	FBtr0082057	2	1	1	178	3R	5157174	5157195	CTATGCCAACGATATTTCACTG		59	5156954	5156972	GTGTGGATTGGATGTATCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Vps16A	FBgn0037674	FBtr0081979	3	1	1	81	3R	5094883	5094901	ATACAGAGTTGATCACCCA		57	5094945	5095032	TGGTCCCTAATAGTCATGTG		58	NA	
Drosophila melanogaster	50	CG34301	FBgn0085330	FBtr0112497	3	1	1	120	3R	4599195	4599213	CATACCTAAGCTCCATGGC		59	4599297	4599384	GAATTTGGTTTCTGGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Est3	FBgn0015571	FBtr0081545	3	1	1	103	3R	3365220	3365299	AAAGCGTACTGTGAGTACG		59	3365135	3365154	CGATAGAGGTATGTGGAAGC		59	NA	
Drosophila melanogaster	50	Ubc84D	FBgn0017456	FBtr0081552	2	1	1	60	3R	3344908	3344926	GCATCGAAATCAACTTCCC		59	3344866	3344887	GTCTTGAATAGGATCTTTGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gfzf	FBgn0053546	FBtr0114531,FBtr0091512	1	2	2	122	3R	2972596	2972675	TACTCGAAGATGAATCCGC		59	2972492	2972510	ATATAGCGTTGAATCCGGC		59	NA	
Drosophila melanogaster	50	Ccp84Ab	FBgn0004782	FBtr0081692	3	1	1	211	3R	2528442	2528536	CTTCAAGTTTGTCTTCGCC		59	2528249	2528267	TTAGCTTGTCATCGACTCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spase18-21	FBgn0026567	FBtr0081687	3	1	1	173	3R	2484888	2484967	TATCCCAAGGTTAAGTGGG		58	2485103	2485122	CACAATGGTCTTACTGTTGG		58	NA	InUTR
Drosophila melanogaster	50	CG2017	FBgn0037391	FBtr0078664,FBtr0114518,FBtr0078663,FBtr0078662,FBtr0078661	1	5	5	92	3R	1685467	1685485	TATGTTTAGGCACATGCAC		58	1685182	1685200	TTGACCACATTACCCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31554	FBgn0051554	FBtr0078637	1	1	1	150	3R	1642729	1642747	CTTAATGACTCCACTCGGG		59	1642861	1642879	ATTCGAAGTCGTACTGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113342	3	1	15	116	3R	110114	113797	TAAGTGCCGTTAAAGATGC		58	114829	114847	CGTAATCAAACGATTACGC		57	NA	InUTR
Drosophila melanogaster	50	CG41456	FBgn0084018	FBtr0111155	2	1	1	79	3L	24282386	24282405	GAAGAAGGAGATCATGAGTG		57	24282326	24282344	TTAGGATGTTACGAGGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ssl1	FBgn0037202	FBtr0078554	1	1	1	173	3L	22872872	22872890	GAAGGTGACCGAACTTACC		59	22873079	22873097	GAGCCCATGATAATGACGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14457	FBgn0037174	FBtr0100669,FBtr0078517	3	2	2	128	3L	22672341	22672359	TTCTATCTCAACCGCATCC		59	22672448	22672530	CTTCTTAAATACCTGACTGTCC		58	NA	
Drosophila melanogaster	50	CG32441	FBgn0052441	FBtr0078375,FBtr0078376	3	2	2	225	3L	21567999	21568332	GGACTTGCTGAAGAAACTG		58	21568521	21568539	CTGGGTGCACTCTATAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32440	FBgn0052440	FBtr0078345	1	1	1	69	3L	21353622	21354058	GGACACCAACGTCTATCAG		59	21354091	21354109	AAAGTACAGGACTGACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12974	FBgn0037065	FBtr0078410,FBtr0078411	1	2	2	126	3L	21276340	21276360	CATTTCCATGATGGTCATCTC		58	21275743	21276255	GAACAAAGTATCCACATTGTCC		59	NA	
Drosophila melanogaster	50	CG5976	FBgn0036999	FBtr0078199	3	1	2	61	3L	20467697	20467716	AAATCTACAATCTAGGCGCT		58	20467737	20468679	GGGATTGTAGGATATCTTAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11796	FBgn0036992	FBtr0078225	1	1	2	99	3L	20432557	20432642	GACAAAGGAACCAAACCTG		58	20432476	20432494	GAGTGGTATAGTAGCTGGC		58	NA	
Drosophila melanogaster	50	obst-F	FBgn0036947	FBtr0074860	1	1	1	65	3L	20194443	20194588	GTCACCTCAGCCATATCTG		59	20194396	20194414	TACAATCCAACGGATGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18811	FBgn0042134	FBtr0075098	3	1	1	61	3L	18664518	18664592	AAGGATAACCTGGCAAAGAC		59	18664476	18664494	TGAATGATCAGAACCTCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	FucTA	FBgn0036485	FBtr0075641	3	1	1	85	3L	15145210	15145228	GTACTATCTGGAGTGTCCG		58	15145277	15145480	TACTATCCCGTCTGTAGGT		58	NA	
Drosophila melanogaster	50	CG17177	FBgn0036440	FBtr0075710	2	1	1	81	3L	14692403	14692786	AATCGGGAGATAATTCACCG		59	14692341	14692359	CAGTGAACTCACCTTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fz	FBgn0001085	FBtr0075743,FBtr0075742	2	2	2	141	3L	14268824	14298012	AAGGATCTGCATGACTGTG		59	14304961	14304979	CAATCAAGAAGGTGAGCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7906	FBgn0036417	FBtr0075741	3	1	1	168	3L	14231000	14231018	CATCACTGTCCATTTGTGC		59	14231211	14231230	ACAGCTTACATCATATCCCT		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Meics	FBgn0025874	FBtr0075791	3	1	1	60	3L	13957404	13957424	CTCAAATCTGAGTAGATCCCA		58	13957364	13957383	CTCGAAGGGTATTAATGGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11267	FBgn0036334	FBtr0075875	2	1	1	274	3L	13009520	13009538	CTGACCAAGACGAAAGGAG		59	13009844	13009862	AATTGTGAGACAGTGTCCG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG34017	FBgn0054017	FBtr0100072	2	1	1	60	3L	12815436	12815455	TCATCCGACTATGATTTGAC		57	12815476	12815496	CTCCTTCCGAATCATATTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7264	FBgn0036214	FBtr0076035	3	1	1	83	3L	11822600	11822618	GGAGCAGTACGAAGATGAG		59	11822721	11822739	CGATCCAGCATTTCTAGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32062	FBgn0052062	FBtr0113419,FBtr0113420,FBtr0113418	3	3	5	122	3L	10561593	10561611	CAGAATATTCAAGTGGCGG		58	10561696	10566559	ATACTGTGGACTTCTGTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6559	FBgn0036081	FBtr0076298	1	1	1	80	3L	10304964	10304984	CCAATATGCAGTAAATCTGCC		59	10303411	10304922	AAGTTTCCTTCAGTTGCGA		59	NA	
Drosophila melanogaster	50	Ard1	FBgn0036064	FBtr0076349,FBtr0076352,FBtr0076351,FBtr0076350,FBtr0076348	2	5	5	66	3L	9966736	9966754	CTGAACCTCTACACCAACG		59	9966784	9966802	CATCGGCATAGTACTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7942	FBgn0035838	FBtr0076686	2	1	2	118	3L	8115213	8115286	CAAATACTACAGTGGCGAG		57	8115368	8115386	AAATATTTGGAGCCACCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8219	FBgn0035693	FBtr0077003	1	1	1	108	3L	6196135	6196153	AAATCTTTCGAGGAATGCG		58	6196280	6196363	CAATAACAAGCACCACTGG		59	NA	
Drosophila melanogaster	50	CG32416	FBgn0052416	FBtr0077110	3	1	1	63	3L	5796478	5796496	GCTACTGTGCAATATGCAC		59	5796523	5796541	GTTTCGGTTGATGCATACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Usp36	FBgn0035633	FBtr0077104,FBtr0077102,FBtr0077099	2	3	6	88	3L	5767630	5767648	AGATGTGGTCGTAATTGCA		59	5768334	5768352	CCATCTCGTTCTCTTCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Blimp-1	FBgn0035625	FBtr0077089	3	1	1	91	3L	5637720	5637842	GCCAAATGTTAAGACTGAAGG		59	5637894	5637913	AATTAGAGGTTGGAATGCCT		59	NA	
Drosophila melanogaster	50	dyl	FBgn0066365	FBtr0073343	2	1	3	297	3L	4299067	4299085	ACTCGTATCAACTGACACC		59	4298554	4298572	GACTATGGCCATTAGGCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG11593	FBgn0035488	FBtr0114509	3	1	1	84	3L	4038742	4038822	GCTTAAACGGTGTTATCAGC		59	4038677	4038695	TATCCAGAATGTCGGATGC		59	NA	
Drosophila melanogaster	50	CG9004	FBgn0035336	FBtr0072890	3	1	1	64	3L	2374622	2374640	GAGAGGAAGAACAAAGCGA		59	2374666	2374739	GTCCTCTTTAATCTTAGGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13801	FBgn0035332	FBtr0072888	2	1	1	60	3L	2362077	2362095	GATATCAATTCTGTCCGCC		58	2362117	2362137	CTTGATGATATCCTTCTGGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aplip1	FBgn0040281	FBtr0072627	2	1	2	251	3L	1197306	1197520	CAAGAAATCTTCCATTCTGC		57	1197734	1197752	GACATGCTCTTAAAGTCGT		57	NA	DesignRelaxed
Drosophila melanogaster	50	klar	FBgn0001316	FBtr0072565,FBtr0112808,FBtr0110818	3	3	4	80	3L	444370	444613	GAACAACAAGCAGAACTCAG		59	444309	444330	GTATTTCTCTTGGTAGTTGTCC		58	NA	
Drosophila melanogaster	50	CG30430	FBgn0050430	FBtr0072448	2	1	1	65	2R	21017163	21017181	CTACTACCCTTGCTGTAGC		59	21017210	21017228	CTATAGAATCCGCATCGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	key	FBgn0041205	FBtr0072428	3	1	1	80	2R	20673807	20673827	GTATCTGAGAAACAGTCCCTG		59	20673604	20673768	GAACTCAAACGAGTGATTTAGC		59	NA	
Drosophila melanogaster	50	CG3419	FBgn0035002	FBtr0072292	3	1	2	90	2R	20301906	20301924	GCAGCCAAGACTTAAATCC		58	20302060	20302079	TTTGTTGGGAATTAAGTGCC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Or59a	FBgn0026384	FBtr0072023	3	1	1	61	2R	19328186	19328204	CTATACGTGTTCATCGGCA		59	19328143	19328161	AACAGAAAGGATAGCTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	twi	FBgn0003900	FBtr0100130,FBtr0071953	2	2	2	60	2R	18934042	18934060	CTGGACATAAGCTACAAGC		57	18934084	18934102	TGATCACATTGTTCTGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30196	FBgn0050196	FBtr0071927	2	1	1	93	2R	18542575	18542685	TCTGCTGTAATCCCATTCG		59	18542500	18542518	CTCAGAGTGATATCGCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tim10	FBgn0027360	FBtr0071676	2	1	2	239	2R	17578227	17578245	ATGCAGGAAATGGAGATCG		59	17577843	17577861	GGTGCCAGGTTAACTAGAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13423	FBgn0034513	FBtr0086217	1	1	1	61	2R	16424676	16424694	GAAATGCTACCTCCACTCC		59	16424717	16424798	GCTTACTCTTCAGTATGAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8920	FBgn0027529	FBtr0086281	3	1	3	101	2R	16211833	16211851	GGTAAACGTATTCATCCGC		58	16211916	16212020	ATGTCGTTGTTTAGGGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10822	FBgn0034478	FBtr0086339	2	1	1	81	2R	15839179	15839197	ATATGACAATTTGCGGGAG		57	15839242	15839260	ACGAACTCTCAGTAGAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mctp	FBgn0034389	FBtr0110970,FBtr0110971	2	2	2	107	2R	14660396	14660473	TATGTCCAGAGCTGTTTCG		59	14660543	14660562	AACTAGAGGTACTGTCTCCA		58	NA	
Drosophila melanogaster	50	edl	FBgn0023214	FBtr0086652	3	1	1	62	2R	14555462	14555480	GAACTGCCACAGAAATTCC		59	14555418	14555438	GTACATATCGAGACTCATCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18538	FBgn0034324	FBtr0086760	3	1	1	67	2R	14184839	14184912	CTGATGAAACCATGGTACG		58	14184943	14184961	TTGTAGTCGCTGACATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	olf186-F	FBgn0041585	FBtr0086795	2	1	5	157	2R	13731906	13738566	CCAGCAGAAATACAGACGT		59	13738686	13738705	TGATCACTGCAGAACTTCTC		59	NA	InUTR
Drosophila melanogaster	50	CG34459	FBgn0085488	FBtr0112765	3	1	1	72	2R	12713706	12713724	GAAGTCCAGGAAGCTAGTG		59	12713760	12713778	CATTCATATTGGCCTCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30324	FBgn0050324	FBtr0087181	1	1	1	92	2R	12175248	12175266	AATTCTACGAGTTGCCAGG		59	12175174	12175192	TATTGGTACAGGGACAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30089	FBgn0050089	FBtr0087285	3	1	1	106	2R	11620382	11620400	ATGAGACTGAATCCAAGGC		59	11620470	11622610	GAATGGATCGCAATTCTGC		59	NA	
Drosophila melanogaster	50	fus	FBgn0023441	FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343	3	4	6	111	2R	11555363	11559507	CAACTGGACAGATCGTAGG		59	11555270	11555289	GTGTTATTGGTGACACTCGA		59	NA	
Drosophila melanogaster	50	CG30470	FBgn0050470	FBtr0087326	1	1	1	60	2R	11348977	11348996	AGTACTGCATTTGATTCCCA		59	11349018	11349037	TACACAGAACACGGTAACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Adgf-E	FBgn0033952	FBtr0087482	2	1	1	63	2R	10545202	10545220	GCAACCAGAATTAGTGGGA		59	10544990	10545177	GCTGGGAAACTCTTTATTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fas	FBgn0000633	FBtr0087625	2	1	1	91	2R	9633833	9633916	CCTATGCGGTAAAGGATCTG		59	9633970	9633988	GTAGAAGGTCCTTGGAACC		59	NA	
Drosophila melanogaster	50	CG4688	FBgn0033817	FBtr0087744	3	1	1	78	2R	9127902	9127921	TTATCATGGAGCGTTACCTG		59	9128054	9128072	GTCACGATGGATAAGTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3884	FBgn0033786	FBtr0087799	2	1	2	60	2R	8838236	8838254	GATACGAATTCCAGAAGCC		57	8838194	8838215	TTCATCCATACATATCCGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8569	FBgn0033752	FBtr0087940	2	1	1	147	2R	8407928	8407946	GAGTTGGTATTTGCCAAGC		59	8408115	8408135	TGGGTGTAATATCACGTTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13183	FBgn0033667	FBtr0088054	1	1	1	82	2R	7793766	7793857	AAAGCTCTTCAGGGATCAC		59	7793702	7793720	AGACAATTATCTTGGCCCA		58	NA	
Drosophila melanogaster	50	CG12384	FBgn0033624	FBtr0088155	1	1	1	194	2R	7245772	7245854	GTACTGGACTGACACAACC		59	7245596	7245614	AATAGTTATTCCGCCCGAG		59	NA	InUTR
Drosophila melanogaster	50	CG11883	FBgn0033538	FBtr0088284,FBtr0113063,FBtr0088283	3	3	3	99	2R	6526827	6526985	ATATGCCAAGTTCATCGAGAG		59	6527046	6527064	ATTTGTTTCCTGGGTTCGT		59	NA	
Drosophila melanogaster	50	CG34363	FBgn0085392	FBtr0112584,FBtr0112585	3	2	2	80	2R	6226461	6226543	GGAGAACATGTTTAATGACCTC		59	6226402	6226421	GCTGATAGAATGGTCAACTG		58	NA	
Drosophila melanogaster	50	CG12911	FBgn0033501	FBtr0088336	3	1	1	107	2R	6146863	6146882	TATGGAGGATCATACGATCG		58	6146952	6147034	ATCGTAGTAGCGATCTCTG		58	NA	
Drosophila melanogaster	50	CG12917	FBgn0033490	FBtr0088329	1	1	1	60	2R	6026363	6026385	CCTCACTTACAATAGTACCTTCC		59	6026404	6026423	TGGGTAACAAATAGCCAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11778	FBgn0033371	FBtr0088563	2	1	1	281	2R	4971216	4971235	TTTCTAAGCATGACCGAGAG		59	4971479	4971553	AATAGACGTATCCGTCGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG8083	FBgn0025709	FBtr0088560,FBtr0088562,FBtr0088561	2	3	3	90	2R	4967849	4967870	GAGGATCTCGATTTATGTACTG		57	4967920	4967992	CTCATAGTTGGTTATGTCGT		57	NA	
Drosophila melanogaster	50	CG8170	FBgn0033365	FBtr0110892,FBtr0088665	1	2	2	82	2R	4909360	4909484	GATAACATTGCTTTCAGGGAC		59	4909298	4909316	TGCAGACTGTAGTCATTGC		59	NA	
Drosophila melanogaster	50	CG8229	FBgn0033356	FBtr0088673,FBtr0088672	3	2	2	60	2R	4837448	4837469	AGCTGAAATACCATTACTACCC		59	4837409	4837427	GATGCTAGGAGACATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8635	FBgn0033317	FBtr0088727	1	1	1	129	2R	4518513	4518590	CCACCACGGATATTATTTGC		59	4518403	4518421	TTCAGCACATATCCAGCTG		59	NA	
Drosophila melanogaster	50	kermit	FBgn0010504	FBtr0088813,FBtr0088814,FBtr0088812,FBtr0088811	3	4	4	64	2R	4035572	4035590	CTAATCCACGACTTCTCCA		58	4035526	4035544	GATATGTCAAAGCACTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nito	FBgn0027548	FBtr0088857,FBtr0088858	2	2	2	123	2R	3850891	3850967	GAATATAGACCACGCGGTC		59	3851054	3851072	GATCGTAGGGATCAATCGG		59	NA	
Drosophila melanogaster	50	kappaB-Ras	FBgn0040513	FBtr0089002	1	1	1	71	2R	3332856	3332874	CATTCGTTCTGGTCTACGA		59	3332803	3332821	CAATGTCAGCCTTGATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33558	FBgn0053558	FBtr0086193,FBtr0113470	1	2	2	80	2R	2850437	2850455	TGGATCTAAGTCTGGAACG		58	2826839	2850393	GCGAAGTGTTCTTCATGTC		59	NA	
Drosophila melanogaster	50	CG3409	FBgn0033095	FBtr0086140	3	1	1	141	2R	2588492	2588512	CATTCTGGTCAGTATTGTGGA		59	2588307	2588389	GAAGGTGTCATCCCATCTG		59	NA	
Drosophila melanogaster	50	CG6448	FBgn0032976	FBtr0113044,FBtr0085939,FBtr0113046,FBtr0085938	1	4	5	84	2L	22140896	22140914	GAGCATTTAGATCTTGCCG		58	22140962	22141603	AAACAGCATCTTGATCCTG		57	NA	
Drosophila melanogaster	50	CG8677	FBgn0026577	FBtr0081477	3	1	1	177	2L	21229974	21229992	GAGGAGTCTTTAGTTCCGG		59	21230186	21230618	GAATATCCACGTGGTCCAG		59	NA	
Drosophila melanogaster	50	CG9328	FBgn0032886	FBtr0081416,FBtr0081415	1	2	2	250	2L	20813340	20813433	CAAGTTCAATGCCAGAGTG		59	20813647	20813665	ACTCGGGATTTACGTACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	bwa	FBgn0045064	FBtr0081331	1	1	1	84	2L	20069446	20069464	TGTTAACGCCTTTGTTCTC		58	20069512	20072369	CCTCTGGTCACTAACTCTC		58	NA	
Drosophila melanogaster	50	barr	FBgn0014127	FBtr0081348	1	1	2	80	2L	20060349	20060427	CATGAGCAACTTCAAGATGG		59	20060288	20060306	AAGTAGATGGAGTCCACAC		58	NA	Nonspecific
Drosophila melanogaster	50	Lim3	FBgn0002023	FBtr0081169,FBtr0081170	3	2	2	96	2L	19081685	19081829	ACTTCTTCAAACGTTACGGT		59	19081608	19081626	AGATGGTAGACGTTGTCCT		59	NA	
Drosophila melanogaster	50	Cyt-b5-r	FBgn0000406	FBtr0080932	1	1	1	60	2L	16789520	16789540	CTTCTTCATACAAATGGGCAC		59	16789408	16789426	GTAGAGGATGTTGGTGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Idgf3	FBgn0020414	FBtr0080864,FBtr0080862,FBtr0080863	3	3	3	91	2L	16451848	16451866	GATCAAGGATTTGAGTGCC		58	16451921	16452205	CATCATAGTACCAGCTGGA		58	NA	
Drosophila melanogaster	50	Syx5	FBgn0011708	FBtr0080831	3	1	2	83	2L	16308248	16308266	TACTCGGAGTTCATGATGG		58	16308313	16308399	CAACATTGTGAGCTTCTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31769	FBgn0051769	FBtr0080602	1	1	1	98	2L	14110567	14110642	TTCAATTACGGATGGGAGC		59	14110487	14110505	TTACGACTGTTTCAAGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5792	FBgn0032455	FBtr0089908,FBtr0089907	3	2	2	144	2L	12713556	12713574	GAGTTCAGTCTCCTTGTCG		59	12713363	12713449	GAACATGAAGCATCTTGGTG		59	NA	
Drosophila melanogaster	50	CG6388	FBgn0032430	FBtr0080367	3	1	1	125	2L	12429624	12429643	CTACGAGTTCGATGAACTCC		59	12429728	12429806	TCACCAATCATAATAGTGGCTC		59	NA	
Drosophila melanogaster	50	CG5325	FBgn0032407	FBtr0080326	1	1	2	148	2L	12094572	12094590	TTCCTACCATTCATGGAGG		58	12094701	12094777	TTCTGGTACCTTTCCTTGTC		59	NA	
Drosophila melanogaster	50	CG14931	FBgn0032374	FBtr0080256	3	1	1	60	2L	11788907	11788925	TGTCCAGAAGAAATCCCTC		58	11788949	11788967	AAAGTTATACGGATCGGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6488	FBgn0032361	FBtr0080248	3	1	1	82	2L	11497785	11497803	AGAGTTCTTTAAGACCGCT		58	11497663	11497739	GTCGCTGATCTTATTGTGC		58	NA	
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0100487,FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486	1	10	10	92	2L	10825824	10825957	GATAAAGCGTACATCATCTACC		58	10825753	10825774	GTTTCGGTTAGCTGATAATGTC		59	NA	
Drosophila melanogaster	50	CG4908	FBgn0032195	FBtr0079950,FBtr0079949	1	2	2	60	2L	10223857	10223875	TCTAGCTTTATAACCGCCC		58	10223899	10223917	ATAGGTTTAGCAGGCAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34109	FBgn0083945	FBtr0110790	1	1	1	80	2L	10107868	10110939	TCCGACAAAGAACTAATGAGAG		59	10110978	10110998	GAAGATGAAGCCAAATAGCAG		59	NA	
Drosophila melanogaster	50	CG4747	FBgn0043456	FBtr0079930	1	1	1	191	2L	10006346	10006364	GGATCCACCATAGTCAAGG		59	10006576	10006916	AAATACGAGATCCTTGGCG		59	NA	
Drosophila melanogaster	50	CG4364	FBgn0032138	FBtr0079848	1	1	1	122	2L	9710877	9710895	AAACATAGGCGTAGAGCTC		59	9710712	9710792	GGCAAAGATCTTGTAGTCAC		58	NA	
Drosophila melanogaster	50	tai	FBgn0041092	FBtr0079794	2	1	1	80	2L	9241541	9241615	CTGCTCAAGCTACTAAACG		58	9241658	9241677	GGAGTTGTTCATAGAACCTG		57	NA	
Drosophila melanogaster	50	Tsp29Fa	FBgn0032074	FBtr0079754	1	1	1	146	2L	8935621	8935641	CATTCACCTGCAATAATGCTC		59	8935749	8935895	TTACGCCAAAGAACTGGAG		59	NA	
Drosophila melanogaster	50	CG9296	FBgn0032059	FBtr0079750	2	1	1	60	2L	8685390	8685408	CAGTTTCTACGACAACGAG		58	8685348	8685367	CTAAATGTAGTACAGGCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab30	FBgn0031882	FBtr0079426,FBtr0079428,FBtr0079427	2	3	3	60	2L	7031658	7031677	GTACTTCTTGGAGACATCCG		59	7031617	7031635	AATCTCGTAGAACAGACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31908	FBgn0051908	FBtr0079429,FBtr0079430	3	2	2	60	2L	7026744	7026762	GATGTGTTAGACAACTGGG		57	7026614	7026633	TTGTTTGCAGAGTCATAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nrv2	FBgn0015777	FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382	3	5	5	89	2L	6791573	6791591	TTTGATCTGGTACAAGGGC		59	6791308	6791520	CCAGGTACTTTGTACACCG		59	NA	
Drosophila melanogaster	50	CG31638	FBgn0051638	FBtr0079262,FBtr0113411	1	2	2	147	2L	6491593	6491687	GAGAAGTGGAGTAAGGTCC		58	6491798	6491816	TCTTTAGCTGCGTGATCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9536	FBgn0031818	FBtr0079267	3	1	1	166	2L	6475576	6475594	AGCGTATTGGTTAATCCCA		58	6475253	6475446	GCCTTCAAGGCAATTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ddr	FBgn0053531	FBtr0091497	1	1	1	80	2L	6296733	6297035	CGACTCAAGTTATATCTCCGA		58	6297077	6297095	CCAGCACTGTGATTATGAC		58	NA	
Drosophila melanogaster	50	CG9226	FBgn0031782	FBtr0079210	2	1	1	82	2L	6126683	6126701	ATCTATGCGGGATACAAGC		59	6126560	6126578	AACTTGACAGGGTAATCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8891	FBgn0031663	FBtr0079048	1	1	1	107	2L	4978827	4978847	CGAGCCTCTAATCTTTAAGGG		59	4978672	4978690	GTCTTATCGTAGCCACTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2976	FBgn0031633	FBtr0077415	3	1	1	103	2L	4829969	4830049	GCAGCTTTAATCTCTATGACG		58	4829886	4829904	CTTGATCACAAAGAAGCGC		59	NA	
Drosophila melanogaster	50	CG34340	FBgn0085369	FBtr0112543	3	1	1	150	2L	3673292	3678219	ACCCATCCATATACCAGCT		59	3678393	3678411	ATACATCCGGATAGTGGGT		59	NA	
Drosophila melanogaster	50	CG8851	FBgn0031546	FBtr0077526,FBtr0077527	3	2	2	69	2L	3521306	3521384	CAGGATCAGAAGTACAAGCA		59	3521416	3521434	TATCTCCAGAGTCCCTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17259	FBgn0031497	FBtr0077667	3	1	1	71	2L	3036112	3036130	ATGATGGACGAGATGATCG		59	3036059	3036077	GTTAACAACGCGATATGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2991	FBgn0031474	FBtr0077627,FBtr0077625,FBtr0077626	1	3	3	121	2L	2866633	2866651	CCTCACAATTGCATCAGTC		58	2866736	2866826	GTTAACTGGAACCTTGGTC		57	NA	
Drosophila melanogaster	50	CG3528	FBgn0031430	FBtr0077781	3	1	1	65	2L	2517592	2517663	AAAGCAAATTTCGACCGTC		59	2517545	2517563	AAGCTGGAGATCTCTAGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab5	FBgn0014010	FBtr0077793,FBtr0077798,FBtr0077796,FBtr0077794,FBtr0077797,FBtr0077795	3	6	6	203	2L	2360797	2360985	AACTGCATAAACAAGCCTC		58	2360549	2360569	CGTTCTTAGGTAGTTTCTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG34174	FBgn0085203	FBtr0112365	3	1	1	63	2L	2214839	2214859	TCCGAAAGATATGAGAAGGAG		58	2214884	2215031	TCGAGTGAGCAATGTTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Uch	FBgn0010288	FBtr0077844	3	1	1	84	2L	2213548	2213624	AGCGAAACCTATGAGAAGC		59	2213482	2213500	TGTAGAAGAGATCCTCGGG		59	NA	
Drosophila melanogaster	50	Obp22a	FBgn0043539	FBtr0100503,FBtr0077866	2	2	2	64	2L	1991986	1992007	CAAGGAGAACAATGTTCATAGG		59	1991943	1991962	TCTTCTTCAAACGATAGCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41482	FBgn0084042	FBtr0111177	3	1	1	107	X	22083319	22092641	TTTAGGATACCCTACAGTACAC		58	22083233	22083252	TCAACAATTGTACCAAAGGC		58	NA	
Drosophila melanogaster	50	l(1)19Ec	FBgn0001560	FBtr0077285	2	1	1	64	X	20753527	20753545	GATGGTCAATGGTCAAACG		59	20753481	20753499	AAGTTATCTGGGTTGACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14207	FBgn0031037	FBtr0074733,FBtr0074734	3	2	2	121	X	19504572	19504590	TAACAAAGTGCTGAAGCTG		58	19504747	19504765	TCTTTGTGTCCGACTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	2	9	9	111	X	15788791	15788877	GAGTTACCGAATATGGCGA		59	15788952	15788970	TTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	CG9281	FBgn0030672	FBtr0074057,FBtr0074056	2	2	2	81	X	15601693	15601779	TGATTATGGTTCAGAACGTG		57	15601631	15601649	AGATCAATTCCGAACTCCA		58	NA	
Drosophila melanogaster	50	CG10353	FBgn0030349	FBtr0114451,FBtr0114452	2	2	2	125	X	11773010	11773092	CATCTACCAGAACATTATCACC		58	11772906	11772924	TACTCGATAATGTGCTCCC		58	NA	
Drosophila melanogaster	50	CG15204	FBgn0030256	FBtr0110985	2	1	1	107	X	10871823	10871841	CACGCACAATCATCATGTC		59	10863487	10871752	AATTCCACGCAGTATTCCT		58	NA	
Drosophila melanogaster	50	CG2258	FBgn0029997	FBtr0071109,FBtr0071111,FBtr0071110	3	3	3	80	X	7991100	7991207	CTCAATCGAGAGGATGATCC		59	7991039	7991057	GTCGATAAACATTCGCAGC		59	NA	
Drosophila melanogaster	50	CG15896	FBgn0029858	FBtr0070898	1	1	1	75	X	6185731	6185749	TATGTGGAGTTCCTGAGGA		59	6185788	6185806	CATTGTAGACCCTCAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dredd	FBgn0020381	FBtr0114561,FBtr0114560,FBtr0114559	1	3	3	80	X	528200	528221	GAAGTTGCTAATCATACAAGCC		59	528073	528161	GTCACGTCTATCCTAAAGAGC		59	NA	
Drosophila melanogaster	50	CG41246	FBgn0085572	FBtr0114015	3	1	1	100	U	1570112	1571136	TATTCGCAAATTGGGTTCC		58	1570030	1570048	CTGGCCTATAGGTAATGGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG31030	FBgn0051030	FBtr0110834	2	1	2	166	3R	25991017	25991035	ACTGCATAGGATTCGTGTC		59	25990814	25990832	GATCTGGATGAACATGGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12428	FBgn0039543	FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236	2	5	5	149	3R	23529755	23529773	ATCCGATGTACACCAAGAG		58	23529568	23529642	TAATGAACACAGCTTCCGA		58	NA	
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113384,FBtr0084928,FBtr0084927	1	3	7	185	3R	21532167	21532185	ACGTGTACCATCCTTATCG		58	21527375	21532019	TTGTTTCAAGATCTTCGACG		58	NA	
Drosophila melanogaster	50	Nup98	FBgn0039120	FBtr0084460	2	1	1	82	3R	19603920	19604018	GATGAGATTGTCCACTTTCG		58	19603857	19603876	TTTAGACCTTGACCAATGGG		59	NA	
Drosophila melanogaster	50	CG10175	FBgn0039084	FBtr0084423,FBtr0084421,FBtr0084422	3	3	3	99	3R	19350515	19350589	TACAGGAGCAAGAAGATTCC		59	19350435	19350453	CATGTTCTTATGCGGACAG		58	NA	
Drosophila melanogaster	50	CG13420	FBgn0038900	FBtr0084130	2	1	1	63	3R	17594518	17594536	ATCTCTGGTACGGAAAGTG		58	17594562	17594581	GATTCTCCTCGTACATACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	2	22	22	85	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202453	17202548	GTTCAGGAATACGATAGCG		57	NA	
Drosophila melanogaster	50	koko	FBgn0051232	FBtr0083625	1	1	5	156	3R	14225882	14229247	TATCATTCTGGAGTTCGGC		59	14229433	14229451	CAAAGATGTACATCGGCAC		58	NA	
Drosophila melanogaster	50	Atx2	FBgn0041188	FBtr0083101,FBtr0083099,FBtr0083100	1	3	3	149	3R	11239226	11239300	TATGCATGGGTCTTCTCAG		58	11239413	11239431	TAGTTCAGTGACGAGTTGC		59	NA	
Drosophila melanogaster	50	RpII140	FBgn0003276	FBtr0082892	2	1	1	173	3R	9953825	9953844	CTATGTCTCCCTACGATCTG		58	9953980	9954073	TAGCTTGCTTACCCATAGC		59	NA	
Drosophila melanogaster	50	yrt	FBgn0004049	FBtr0114374	2	1	4	80	3R	9257439	9257457	TTAGAAATGCAACGAGCTC		58	9257062	9257395	TGTTGATAGTCACCCTGAG		58	NA	
Drosophila melanogaster	50	sim	FBgn0004666	FBtr0082711,FBtr0082710	1	2	2	88	3R	8900719	8900812	GATTTAAGGTGATACACTGCTC		58	8900861	8900879	GAGATTCTGGATGAGGCTG		59	NA	
Drosophila melanogaster	50	Gasp	FBgn0026077	FBtr0112922	3	1	2	83	3R	1919999	1920017	CACAGTGTTCAAGATTGGC		59	1915401	1919952	CCATAGTAATCCTCGCACC		59	NA	
Drosophila melanogaster	50	mub	FBgn0014362	FBtr0078469,FBtr0111017,FBtr0078468,FBtr0078470	3	4	4	103	3L	21908095	21908206	AAGAAGTTCGAAGAGTGGTG		59	21908272	21908290	AACGATCCACATTGACTGG		59	NA	
Drosophila melanogaster	50	CG34258	FBgn0085287	FBtr0112452	2	1	1	114	3L	19944749	19944767	ATAGTTATCCGGACTGCCT		59	19944599	19944618	TAGAACTTCCTTCCGATCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	TSG101	FBgn0036666	FBtr0075329	2	1	1	81	3L	16836406	16836425	GTTACCTTCGGAGATCATCC		59	16836468	16836618	GCATATAAGAGTTCGTGGGA		59	NA	
Drosophila melanogaster	50	st	FBgn0003515	FBtr0075391	2	1	1	81	3L	16493263	16493341	GAATATAACCTGCTTTCAGGAG		58	16493383	16493401	GTTGAAGCTGTACTTGTCC		58	NA	
Drosophila melanogaster	50	CG13484	FBgn0036406	FBtr0075780	2	1	1	85	3L	14045807	14045825	AACAGAACTGGGATCATCC		58	14045740	14045758	GGAGGGATGAAAGTACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	caps	FBgn0023095	FBtr0075832,FBtr0111005,FBtr0075833	3	3	3	158	3L	13222138	13222156	ATTTGTAGCTGTGCTTTCG		58	13231812	13244269	GTTCTGCCGGTATAATCCT		58	NA	InUTR
Drosophila melanogaster	50	CG5718	FBgn0036222	FBtr0076069	2	1	1	62	3L	11916171	11916189	AAGGACATCAAGACAACCG		59	11916127	11916145	CTCTAGCGTCTCAACTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14141	FBgn0036146	FBtr0076164	1	1	1	60	3L	11194894	11194912	TATCACCTGGTACAAGGAC		57	11194934	11194954	TTCGTGTACGTGCATATAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7498	FBgn0040833	FBtr0076731	1	1	1	77	3L	8148549	8148567	AATGGCTGACCATTGAGAG		59	8148490	8148508	TTGATCGCGTTAATGATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5150	FBgn0035620	FBtr0077086	1	1	1	60	3L	5589658	5589676	GAGGAGATGACACAGAAGG		59	5589700	5589718	AAAGGAAGTATCCCTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32237	FBgn0052237	FBtr0073356	2	1	1	137	3L	4852138	4852156	ATGGATACCGCTACAAGAC		58	4852019	4852037	CTTCCTCAACTGGAACCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Src64B	FBgn0003501	FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321	2	5	5	158	3L	4596190	4596208	ATCTGAGCTTCATGAAGGG		59	4595932	4596069	TCTCAAAGAACCAGTCTTCG		59	NA	
Drosophila melanogaster	50	CG12017	FBgn0035429	FBtr0073052	1	1	1	86	3L	3289113	3289131	CATAGCCCTGATTGGTCTG		59	3289179	3290313	ACGTATACAACCTTAGATGGC		59	NA	
Drosophila melanogaster	50	CG1246	FBgn0035360	FBtr0072938	2	1	1	82	3L	2648947	2648968	GGAGTTCATCTTCATGATAACC		58	2649010	2649083	TGCACAAAGTGGTTATTACC		58	NA	
Drosophila melanogaster	50	miple	FBgn0027111	FBtr0072505,FBtr0072504	3	2	2	160	3L	268947	269102	GAACAAAGATAAAGCTGCTC		57	269225	269243	ACATAGCAGACAGTTAACG		57	NA	InUTR
Drosophila melanogaster	50	Pk61C	FBgn0020386	FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466	2	8	8	87	3L	142804	142822	ATATCGCGACTGCTTAGTG		59	142873	142954	GGTCGAAAGAGTTCTTTGC		59	NA	
Drosophila melanogaster	50	TM4SF	FBgn0020372	FBtr0100255,FBtr0072130	3	2	2	171	2R	19767864	19767958	TAGCCATATTCCAGAGCCT		59	19768093	19768111	GATAGATTGATGGGCGAGG		59	NA	InUTR
Drosophila melanogaster	50	CG3501	FBgn0034791	FBtr0071907	1	1	1	60	2R	18769407	18769427	AACGGGAAGGATTAGTAATCG		59	18769367	18769386	TGGTTGTCGTAGAAGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30278	FBgn0050278	FBtr0071780	1	1	1	60	2R	18105440	18105461	CAAACATTCTGTTATCCTGGAC		59	18105401	18105419	GAATTTCATCGGGAAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11099	FBgn0034485	FBtr0086315	3	1	1	68	2R	16125482	16125500	CCTCGTACTACTTCATGGT		58	16125786	16125804	AGAAGTTGCAGGTGAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Atg7	FBgn0034366	FBtr0086711,FBtr0086712	1	2	2	153	2R	14510634	14510652	GCTTTGACAGTTATCTGGT		57	14508827	14510517	TCTTTGAGCGAATTTCCAG		58	NA	
Drosophila melanogaster	50	aft	FBgn0026309	FBtr0089549	3	1	1	156	2R	13674237	13674309	AAGGATGAGATTAAATGGCG		58	13674426	13674446	CCACATCTAGTAGATTTCCAG		57	NA	
Drosophila melanogaster	50	CG15611	FBgn0034194	FBtr0086982,FBtr0086981	3	2	2	89	2R	13000829	13000848	AGCTTCTATTGCTATGTGAG		57	13000900	13000981	TTGATATGTCTGCAACCAC		57	NA	
Drosophila melanogaster	50	CG4282	FBgn0034114	FBtr0087144	2	1	1	79	2R	12211264	12211282	GTTCAAGTTCACCTGTTCC		58	12211387	12211405	CATGCATAGAGCTCATGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9068	FBgn0034106	FBtr0087138	2	1	1	81	2R	12171688	12171706	GATACTTTGACGGTTCCAC		58	12171751	12171833	CTTGAAGGACTTCATAGCG		57	NA	
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930	3	5	6	106	2R	8335508	8335527	TATCATAACCTCAACAAGCG		57	8335595	8335676	GAGTTATCACTTGTGTACGC		58	NA	
Drosophila melanogaster	50	CG8701	FBgn0033287	FBtr0088740	3	1	1	66	2R	4259246	4259264	CCTAGAATCAAGATGCCCG		59	4259294	4259312	TCTTACGTCTAACGACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)01289	FBgn0010482	FBtr0086136	2	1	4	86	2R	2620751	2625474	TTCTGTTCTACGACAAAGACC		59	2620685	2620703	TATCGTTCTGATCGCACTC		59	NA	
Drosophila melanogaster	50	CG14400	FBgn0032896	FBtr0081449	2	1	1	60	2L	20857349	20857367	GTATATCGGCAATCGAGAG		57	20857307	20857325	CTCGTAAAGCATCAACTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33307	FBgn0053307	FBtr0080565	2	1	1	80	2L	13841027	13841108	TATCTTCGAAGAGTTCAAGGAC		59	13840968	13840988	GTCTTATATTGCAAGTCGGTG		59	NA	
Drosophila melanogaster	50	nub	FBgn0085424	FBtr0112642	1	1	2	119	2L	12614102	12614120	ATAAGGTCCTGGAACTGAC		58	12614202	12622983	GACTGATATCATTTGGGTCC		57	NA	
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079620,FBtr0079621	3	2	4	91	2L	8245213	8252236	AGATACCAGCTCCTAATGTC		58	8245141	8245159	CGTAATCGTATAAGCCGGA		59	NA	
Drosophila melanogaster	50	CG13984	FBgn0031796	FBtr0079247	2	1	1	77	2L	6309005	6309023	TTCGTTGTCTACAAGGCAG		59	6309061	6309082	GAGATCATCGTACTTATCATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34125	FBgn0083961	FBtr0110839	1	1	1	61	2L	4965942	4965960	TATGGCTATCCACAAGGAG		58	4965984	4966003	CTGATCATGCCGTAATACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mad	FBgn0011648	FBtr0077616	3	1	1	101	2L	3148119	3148137	AATCCTTCCAACAACTCGG		59	3147815	3148055	AACACCCTTGCCTATATGAC		59	NA	
Drosophila melanogaster	50	CG9216	FBgn0030726	FBtr0074252,FBtr0074253	3	2	3	163	X	15991601	15991749	GTCGATGATCAATGTGCTC		58	15991456	15991474	TACTGTTCGGAGACATTGG		58	NA	
Drosophila melanogaster	50	CG11581	FBgn0030540	FBtr0073892	1	1	1	66	X	14071741	14071759	TCCAGCAGGATTCAATGTG		59	14071789	14071807	TTGTTGGTAGGGATTCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11063	FBgn0030530	FBtr0073834	3	1	1	117	X	13721461	13721481	CAATCTGTATCACACCAACTG		58	13721130	13721382	GCCCGAGTACATGTAATCC		59	NA	
Drosophila melanogaster	50	Lig4	FBgn0030506	FBtr0073847	1	1	1	80	X	13560304	13560324	AAGCAGGGATCAAGATATCAG		59	13560182	13560263	CAGCCCTTTGATGTAATCAG		58	NA	
Drosophila melanogaster	50	CG12715	FBgn0030443	FBtr0073750	2	1	1	60	X	12947935	12947956	GTTTATACCGGAATCTGTACGA		59	12947896	12947915	ATTACCTCATCCACATCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL49	FBgn0030433	FBtr0073691	1	1	1	243	X	12801265	12801347	AAAGCTAAGCCAGCTTACC		59	12801554	12801572	ATGGTAACCCAGTTCTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32702	FBgn0052702	FBtr0071370	2	1	1	80	X	9458597	9458674	CCTCCTATAACTACGAGCA		57	9458535	9458553	GGAATTTGCTTGGAAAGTG		57	NA	
Drosophila melanogaster	50	dx	FBgn0000524	FBtr0070914	2	1	1	143	X	6431034	6431120	TGTTTACGACATTGCATCG		58	6431227	6431245	AATGCAATCTTGAGGAAGC		58	NA	
Drosophila melanogaster	50	CG6067	FBgn0029828	FBtr0070864	2	1	1	120	X	5851296	5851314	TCACTAGCTGCATCTTCAG		59	5851467	5851485	GTCACTCCGAATACGAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	wds	FBgn0040066	FBtr0070438	3	1	1	143	X	2481412	2481484	GAGGAAAGTGGATCGTGAG		59	2481591	2481609	AAGCAATGATGTTCTCCGT		59	NA	
Drosophila melanogaster	50	bcn92	FBgn0013432	FBtr0070431	3	1	1	186	X	2043364	2043443	CAACTTCAGAATGTACGCTG		59	2042820	2042841	GGTCTTCTTGTTCTCTATAACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG40625	FBgn0085503	FBtr0113915	1	1	1	80	U	5511406	5511488	AAGAATGGACCTACAGGGA		59	5511531	5511550	CCTGTGTTACAACAATCGAC		59	NA	Nonspecific
Drosophila melanogaster	50	Irk2	FBgn0039081	FBtr0084426,FBtr0084425	2	2	2	88	3R	19340991	19341009	TCTTTGCTCTCATCTGGTG		59	19340868	19340939	CCAACCAGATTCCTCTTGG		59	NA	
Drosophila melanogaster	50	CG4367	FBgn0038783	FBtr0083901	2	1	1	69	3R	16130582	16130600	GATGTTAAGTCCAACCGGA		59	16130531	16130549	GTCATCGTAGTTTGTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33333	FBgn0053333	FBtr0083441	1	1	1	250	3R	13243369	13243387	CTTACGGTCAAGACCAAGG		59	13243601	13243619	TTGACTAGCTCCTACAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11598	FBgn0038067	FBtr0110781	1	1	1	103	3R	8461359	8461377	CTTGAGTAATGTATGCGGG		57	8461443	8461526	GAATAACGCTTGTGTTTAGG		57	NA	
Drosophila melanogaster	50	CG10038	FBgn0038013	FBtr0082614	3	1	2	185	3R	8176025	8176106	ATTCGATGGAGAAGGAGTG		58	8175646	8175664	ATGTAGGTGCGACTAAGAC		58	NA	
Drosophila melanogaster	50	CkIIalpha	FBgn0000258	FBtr0070042,FBtr0070043	2	2	3	269	3L	23093381	23093400	GGATATCATACGAGACGGAG		58	23095396	23095414	ATATTCATCCGGTTTGTGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG33292	FBgn0053292	FBtr0078428	2	1	1	91	3L	21651541	21651559	AAGAAGAGTGCTCCTTCAG		58	21651614	21651632	AAGTTCTTGAGGGAGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11309	FBgn0037070	FBtr0078407,FBtr0078406	3	2	2	109	3L	21297076	21297094	CTCAAGTGGCACTATTACC		57	21296625	21296643	GAACCGTAATGCTGATCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	l(3)73Ah	FBgn0002283	FBtr0075311	2	1	1	77	3L	16582569	16582587	TAACGCATCTCAAGAAGCT		58	16582628	16582764	TGCACAGTATGTCGATCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7560	FBgn0036157	FBtr0076173	3	1	1	83	3L	11418884	11418905	CAGAGGGATACACTAGTTTAGG		59	11418949	11419034	CTCCAGCATCAATCTTTGC		59	NA	
Drosophila melanogaster	50	Rab-RP3	FBgn0015793	FBtr0076705	1	1	1	137	3L	8291043	8291061	GAGGTGGACTTTGAAGAGG		59	8291162	8291228	GTGTTGGCGTTTAAGTTCG		59	NA	
Drosophila melanogaster	50	CG10077	FBgn0035720	FBtr0076941,FBtr0076940	1	2	2	65	3L	6947251	6947269	CAGGTACTCATGTGGTCAG		59	6947204	6947222	ATTAAGGAATTCCTCGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sr-CII	FBgn0020377	FBtr0088004	1	1	1	93	2R	8096891	8096981	CCAGCACATTACAGTTACCA		59	8096817	8096838	CGGAATATTTGTGTTCATGTCC		59	NA	
Drosophila melanogaster	50	CG14401	FBgn0032900	FBtr0081430	1	1	1	121	2L	20870745	20870834	AAGTACCATGAGGGAATGC		59	20870919	20870937	TTCATAAAGGGCACCACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	heix	FBgn0028375	FBtr0080852	1	1	1	89	2L	16298934	16298954	CCTATTTCGACTTCATCAAGG		58	16298187	16298883	ATACCACCTCATCCTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31839	FBgn0028543	FBtr0080618	2	1	1	175	2L	13965842	13965860	AATGGAATATGCACTGCTC		57	13965685	13965703	CAGTACTTACGAGTCTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ACXA	FBgn0040510	FBtr0080415	1	1	1	80	2L	12924120	12924195	AACTACAAGCTCAACCTGG		59	12924236	12924257	GTTAAGCAGGATTATGATGGAC		58	NA	
Drosophila melanogaster	50	CG14945	FBgn0032402	FBtr0080295,FBtr0080294	2	2	2	160	2L	12051364	12051454	CAATGACTTCGATGTGTCTC		58	12051574	12051595	CCAGTTCATTTCGATACAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cry	FBgn0005664	FBtr0080281	3	1	1	77	2L	11944243	11945003	GACATACTTGTTGCTCTGC		58	11945044	11945062	TTAAGATCGATTGGACGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7164	FBgn0031946	FBtr0079487	2	1	1	80	2L	7781833	7781912	ATTCACTCGACCATGAAGTC		59	7781955	7781973	ATTCGGAGTTCCAGATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13999	FBgn0031753	FBtr0079150	3	1	1	119	2L	5955796	5955814	GGTCTGATTGCCCTATCAG		59	5955638	5955656	GATCCAGTCAAGATGCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Art2	FBgn0031592	FBtr0077476	3	1	1	289	2L	4279022	4279098	TTCTTCAGGCACAAGACTG		59	4278625	4278645	GCAAATAATAACGACTCGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34016	FBgn0054016	FBtr0100071	3	1	1	157	2L	1099805	1099823	AACAAGTGGTCAGATTGTC		57	1099944	1102165	CCAAACAAATACACTGCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL10	FBgn0031231	FBtr0078124	3	1	1	82	2L	203882	204002	ATACAAAGAAGCCTTTCCCT		58	204045	204065	CGCTGTATATTGATCTTACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31976	FBgn0051976	FBtr0078152	3	1	1	71	2L	139181	139258	GAGAGCTGTTATTATGTGACC		58	139130	139148	CATGTTCACAACAAACCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mir-276aS	FBgn0067717	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30254	FBgn0050254	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:L2:44EF	FBgn0011906	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-G2743	FBgn0086034	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR31892	FBgn0051892	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snmRNA:765	FBgn0065083	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	l(1)G0196	FBgn0027279	FBtr0077355	2	1	5	137	X	21907084	21907102	GGTGGAGTCTTTCTGAGTG		59	21907203	21907449	ATCGAACCCTTCCATTGAC		59	NA	
Drosophila melanogaster	50	CG14617	FBgn0031191	FBtr0100651,FBtr0077352	1	2	5	152	X	21886354	21887249	CTGGGCAATAAATATGTCGAG		58	21887363	21887381	GAAGATCAGGGTGTCTCTG		59	NA	
Drosophila melanogaster	50	CG14613	FBgn0031188	FBtr0077367	3	1	1	64	X	21873004	21873022	TGTGCTATAAAGTGGCCAC		59	21872795	21872814	AATGGATACGGTTGTACACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32819	FBgn0052819	FBtr0070051,FBtr0070050	1	2	2	252	X	21490060	21490078	CATCGAGAAGTTCGATCCC		59	21489666	21489684	CTGTTGGACCTTCTGAAGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Sep1	FBgn0011710	FBtr0077198,FBtr0077199	3	2	2	121	X	21230619	21230638	ATTCGAGTTCACCCTAATGG		59	21230722	21230806	TTTGTTTCTCTATGGCGTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG33713	FBgn0064116	FBtr0077227,FBtr0091702	1	2	2	60	X	21189427	21189446	AGGAGAACAATCTAGACAGG		58	21189386	21189404	TCCAGCTTAACCAAGTCAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	r-cup	FBgn0031142	FBtr0077269,FBtr0077270	3	2	2	60	X	20896647	20896666	AGAAGTACTTCGACAAATGC		58	20896606	20896626	AGATAAAGAGCCTTGTGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089398	3	1	13	86	X	20105886	20105904	ACTGGTCTACACAAAGCAG		59	20101661	20104507	TCGTCGTCTCCATAATAATCC		59	NA	
Drosophila melanogaster	50	CG9581	FBgn0031093	FBtr0070026	1	1	1	60	X	20063412	20063431	TCCAAGAAGTATATGAGCGG		58	20063371	20063389	AGTAGAAGTCCGAGTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15814	FBgn0030873	FBtr0074471,FBtr0074469,FBtr0074470,FBtr0074468	1	4	4	97	X	17743220	17743238	TGATGTTCTGCTTCTACGG		59	17743079	17743160	TGTGTAGTAGCCAATAGCTG		59	NA	
Drosophila melanogaster	50	Ucp4A	FBgn0030872	FBtr0074464	1	1	1	130	X	17739670	17739688	CTTACATCGTTTCCGTGGT		59	17739779	17740724	GTATTGCATATTGGACTTTCCC		59	NA	
Drosophila melanogaster	50	OdsH	FBgn0026058	FBtr0074461	2	1	1	169	X	17705780	17705799	ATGATTGTACAGAGTCCTCG		58	17705931	17707351	GAACCAAACCGCTATACGA		59	NA	
Drosophila melanogaster	50	CG10597	FBgn0030832	FBtr0074398	1	1	1	60	X	17125009	17125027	AGGTAAGAAATCGAGGAGC		58	17124967	17124987	GAAGGATATCGTTAACGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4991	FBgn0030817	FBtr0074384	3	1	2	135	X	16997410	16997429	GCTAAATCTTGTAGTGGAGG		57	16997632	16997653	GTTATTAGACCTCTTTAGTGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15865	FBgn0015336	FBtr0074375	2	1	1	60	X	16555350	16555371	AGAGAACCAATAGATTCTCCTG		59	16555311	16555330	TTGATTTGATTCCCGTTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Stim	FBgn0045073	FBtr0074161,FBtr0074160,FBtr0074159	2	3	3	80	X	15829502	15829520	GAATGTTCTGTACGGTCGA		59	15829366	15829460	GTAATACGTGCTCTAGAACCC		59	NA	
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	3	9	9	111	X	15788792	15788878	AGTTACCGAATATGGCGAG		59	15788952	15788971	TTTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	Aats-arg	FBgn0027093	FBtr0074178	1	1	1	115	X	15737019	15737100	AATCCAAGAAGCGATTCGA		59	15736922	15736940	ATTGCAAATTAGCTCCCAC		58	NA	
Drosophila melanogaster	50	CG8565	FBgn0030697	FBtr0074103	2	1	1	105	X	15734052	15734322	TGCATATACGACTGGAACC		59	15734391	15734409	TATCTTCACCCGTACATCG		58	NA	
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	1	7	7	80	X	15717652	15717670	TATCACCGGCATCTATTCG		59	15717712	15717802	TTGCCGTATATCAACAGTCTC		59	NA	
Drosophila melanogaster	50	CG8974	FBgn0030693	FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186	3	5	5	212	X	15688455	15688537	GATCCACGTAACAAAGTTCC		58	15688197	15688215	CTGTTCATCCTCGTATTGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG15890	FBgn0030576	FBtr0073939	3	1	1	94	X	14652489	14652507	CGCTACATTGAGAGTCCTG		59	14652352	14652432	GGAATCGGTACATCCATAGG		59	NA	
Drosophila melanogaster	50	CG14414	FBgn0030571	FBtr0073931,FBtr0073930,FBtr0073932	3	3	3	220	X	14475704	14475797	ATATGATGAAACGCAGAAGC		58	14475980	14475998	CGCGATCCTTGTTAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1461	FBgn0030558	FBtr0073908	3	1	1	143	X	14157990	14158074	CCGATGAGATCTATGAGCA		58	14158181	14158199	CTATGATCCAACCCATTCG		57	NA	
Drosophila melanogaster	50	CG32639	FBgn0052639	FBtr0073734	2	1	1	104	X	13130221	13130239	TATGGAGGATGATCCATCC		57	13130135	13130153	AAATAATTGGCGAATGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Smr	FBgn0024308	FBtr0073707,FBtr0073706,FBtr0073708	2	3	3	86	X	12604887	12604908	CAATTATCTTGGACAGAAGCTG		59	12604744	12604841	TTGGATTCACTAACATCCGA		58	NA	
Drosophila melanogaster	50	bif	FBgn0014133	FBtr0073527,FBtr0073526	1	2	2	139	X	11575137	11575759	TGCAATTGCAGATTTCACAG		59	11575861	11575879	CAACAGAGTGATGACCTCC		59	NA	
Drosophila melanogaster	50	Or10a	FBgn0030298	FBtr0073548	2	1	1	92	X	11310698	11310717	TTTATTTCGAGTTCTGTGCC		58	11310566	11310643	CCAAGTGATCAGTGTAGGG		59	NA	
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489	1	8	12	99	X	11291936	11292011	ATATAACCAGAGAACCGCG		59	11292074	11292092	GACACATAGATACCCTGGC		59	NA	
Drosophila melanogaster	50	CG15211	FBgn0030234	FBtr0112977,FBtr0073376,FBtr0112975,FBtr0112976	2	4	4	187	X	10667187	10671999	AATTGTGGAGTTTGTGCTG		58	10672150	10672250	TCAGCTCCGAGAATATCCA		59	NA	
Drosophila melanogaster	50	Psf3	FBgn0030196	FBtr0071465	1	1	1	278	X	10278772	10278790	TATCGCAATGTGCATAAGG		57	10278451	10278531	TTCGATGTACTGACTGTTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33557	FBgn0053557	FBtr0091534	2	1	1	139	X	9903604	9903622	TGTTAATTCGGCCTACGAG		59	9903724	9903800	ATTCAGTGCCTGTTTCTAGG		59	NA	
Drosophila melanogaster	50	CG12112	FBgn0030048	FBtr0071233	2	1	1	93	X	8453600	8453693	GGATCTATACGAATTCCATGC		58	8453527	8453546	TAGTTCAGAAGGATGTCCTC		58	NA	
Drosophila melanogaster	50	CG10958	FBgn0030004	FBtr0071153	3	1	1	60	X	8028134	8028153	GCTAAAGATTCTTGAACCGT		58	8028174	8028194	TATATTGTCGATGCGTACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	3	12	15	240	X	6978842	6979199	CTTTGTTCGGTACAACAAGC		59	6978621	6978640	AATTGATCTACCTCTGTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14430	FBgn0029927	FBtr0071004	3	1	1	63	X	6880912	6880930	GACTATGTGCGAAACAAGG		58	6880955	6880975	CCGTATCACAAGTGTAAATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33664	FBgn0053664	FBtr0091643	1	1	1	60	X	6278508	6278526	AAGTTTGTAAGCGACACTC		57	6278550	6278568	TGTTGCCTTCAAGTAACTG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15892	FBgn0029859	FBtr0070926,FBtr0070927	1	2	2	63	X	6187896	6187914	TGTATACGATCCGAAGCTG		58	6187851	6187869	AATGGCTTTGTATTTGCCC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3108	FBgn0029807	FBtr0070833	3	1	1	124	X	5671799	5671818	GTACATTCTGTATCCTTGGG		57	5671623	5671641	ATCCCACCGTATACTTCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17761	FBgn0040914	FBtr0070856	2	1	1	203	X	5537047	5537065	GAAAGATTACTGGACCAGC		57	5535973	5535991	ATCCAAATTGAAGTCCTCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Xpac	FBgn0004832	FBtr0070670	2	1	1	65	X	3997716	3997734	TATACCAGTGCAGTACGAG		58	3997669	3997687	TTGAACAAATAGGAGTCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13021	FBgn0029669	FBtr0070570,FBtr0070571,FBtr0070572	3	3	3	60	X	3409538	3409556	TGTACGAATCGGTAATCCG		59	3409579	3409598	GGATCCTTCGTCCTTATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	1	13	13	80	X	2567070	2567088	ATGGAGGGTAATCACACCT		59	2567131	2567221	CTGTATTGAGAGCTCATGCT		59	NA	
Drosophila melanogaster	50	Actn	FBgn0000667	FBtr0070343,FBtr0070345	2	2	3	81	X	1924300	1924320	CTGGAGAATCTTAATACTGCC		57	1923951	1924258	TGATCAAATCATCTGGATCC		57	NA	
Drosophila melanogaster	50	sta	FBgn0003517	FBtr0070291	3	1	3	60	X	1376962	1376980	GTCCACTAACCATATGCCT		58	1376920	1376940	GACATGTTAACGTGGAAAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3777	FBgn0024989	FBtr0070066,FBtr0070068,FBtr0070067	1	3	3	98	X	241723	242116	CAAACAAGACTGGTAGAAATCG		59	242175	242193	CTACTGATGTGGCATCTGG		59	NA	
Drosophila melanogaster	50	CR40546	FBgn0085742	FBtr0114192	1	1	1	60	U	5727892	5727910	GGTGTTGTAAGTGGTTGAG		58	5727932	5727952	CAAGGAAAGGATAAGCTTCAG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40948	FBgn0085541	FBtr0113954	2	1	1	60	U	8664470	8664494	CTAGATGAAGATACTAGACACATGG		59	8664434	8664455	CTTGAATAAGTCCAATGCTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dyrk3	FBgn0027101	FBtr0100402,FBtr0100404,FBtr0100406,FBtr0100403,FBtr0100405	1	5	5	111	4	1230562	1230632	AGTTACAGGGCAGAATAGG		58	1230469	1230487	AAGACGAAGACTGGAATGG		59	NA	
Drosophila melanogaster	50	CG32016	FBgn0052016	FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232	3	6	6	146	4	974515	974656	CTACTCTCAAGAATTGCATTCG		59	974390	974408	CTTGGTGATTGCGTATCCT		59	NA	
Drosophila melanogaster	50	CG11576	FBgn0039882	FBtr0085852	3	1	1	60	3R	27633695	27633713	TTTATGCCCTACATGGGAC		59	27633653	27633671	CCTCGCCAATAAAGTAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11315	FBgn0039801	FBtr0085721,FBtr0085722	3	2	2	129	3R	26571886	26571904	CAGACTTGCGAAGATAGTG		57	26571775	26571793	TAAAGTCGAAGCTCATCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11313	FBgn0039798	FBtr0085724	3	1	1	92	3R	26556350	26556371	GGGATCACTGATCAATAATCGA		59	26556226	26556299	ACTCTGAAAGAGACATCTCCT		59	NA	
Drosophila melanogaster	50	CG2217	FBgn0027544	FBtr0085630	1	1	1	209	3R	26244956	26244977	CGCCGGATTATATTACTATCAC		58	26244698	26244717	ACGCTAAGATGCAATTACAC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Mgat2	FBgn0039738	FBtr0085602,FBtr0100418	3	2	2	182	3R	25845044	25845119	TCAATTATCTGGACTCGCG		59	25844816	25844834	GACTACTGGCATTCAGGAG		59	NA	
Drosophila melanogaster	50	Gfat2	FBgn0039580	FBtr0085297	2	1	1	63	3R	24164219	24164237	CAGGATGAGGTTCGATACG		59	24164174	24164192	GATCTCCGGTATGTACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5815	FBgn0027574	FBtr0085106,FBtr0085107	2	2	2	128	3R	22939849	22939867	GATGTTCAGAGATCACAGG		57	22940019	22940039	CTCAGAATCGTATTCATCCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14247	FBgn0039454	FBtr0085043	1	1	1	242	3R	22563729	22563747	ATATTCTACGTGTGCTCCG		59	22563953	22563971	ATTTATGCTGGGACACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LpR1	FBgn0066101	FBtr0113480,FBtr0084925	1	2	6	155	3R	21575100	21577790	TATAAATGAGGCCACTTGCT		59	21573920	21573938	TATTCATCCGGTGAACAGG		59	NA	
Drosophila melanogaster	50	Lgr3	FBgn0039354	FBtr0084899	3	1	1	92	3R	21501836	21501903	TATTACAAGGTTGTGCTGGA		58	21501958	21501976	GATAAGCATCGAAACCTCC		57	NA	
Drosophila melanogaster	50	CG31288	FBgn0051288	FBtr0084860	3	1	1	72	3R	21124465	21124483	CTACAAGAAGGCAATGCTC		58	21124348	21124429	CTTAACAGTGGGAAATGCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG31098	FBgn0051098	FBtr0084863	3	1	1	82	3R	21117524	21117542	AAGCTAAACTACCAGGGAC		58	21117402	21117478	CCAATGACACCCATAAGAC		57	NA	
Drosophila melanogaster	50	CG13654	FBgn0039290	FBtr0084805	1	1	1	80	3R	21036521	21036600	ACCAAGGATCAGAGATTTAAGG		59	21036639	21036659	AGGTCCTTCAATGGTAATACG		59	NA	
Drosophila melanogaster	50	Ets96B	FBgn0039225	FBtr0084696,FBtr0084697	3	2	2	104	3R	20620073	20620092	GAACATCGAGTTTCTTTGAC		57	20620158	20620328	ATGATGGAAATCTGTAGCAG		57	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0084683,FBtr0100635,FBtr0084685	3	3	17	92	3R	20521093	20521111	GGACATTAAGGACGAGACG		59	20521838	20527819	TGGTGTTCATCTAAGTCATCG		59	NA	
Drosophila melanogaster	50	atl	FBgn0039213	FBtr0084656,FBtr0084657	3	2	2	93	3R	20459010	20459028	GTGGGTCTCTATACGTTCG		59	20459082	20459165	CTCCGCTATATCTAATGTAGGC		59	NA	
Drosophila melanogaster	50	Lsd-1	FBgn0039114	FBtr0084456,FBtr0084455,FBtr0084457	3	3	3	167	3R	19591778	19591859	AACATACCCAGAAACCTGG		59	19591989	19592008	CTGAAGGCTACCATAGAACG		59	NA	
Drosophila melanogaster	50	CG16723	FBgn0039092	FBtr0084484	2	1	1	80	3R	19421265	19421285	TTATCCTATCCTTGATGTGCG		59	19421145	19421225	GAATACTCCTGGGATCATCAC		59	NA	
Drosophila melanogaster	50	CG10175	FBgn0039084	FBtr0084423,FBtr0084421	2	2	3	104	3R	19350706	19351231	TAAGATCTCTGCGGAAAGAG		58	19350621	19350639	TATAGTAGCCTCCTCGCTC		59	NA	
Drosophila melanogaster	50	CG4408	FBgn0039073	FBtr0084431	1	1	1	60	3R	19188044	19188062	TATATCCCTCATCAGGTGG		57	19188002	19188021	GTAATCGGTATCTTGAGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sec13	FBgn0024509	FBtr0084409	2	1	1	129	3R	19183574	19183592	GATCTATCCGAGTGGACCT		59	19183685	19183703	TCTCCTTCCACAATGTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4771	FBgn0039018	FBtr0084323	3	1	1	96	3R	18569644	18569662	TTAATAGGAGCCTCAACCG		58	18569504	18569585	ATGTATGGAAGACAGTCCTC		58	NA	
Drosophila melanogaster	50	CG31169	FBgn0051169	FBtr0084217,FBtr0084218	1	2	2	80	3R	18209069	18209140	TATGCAACACGAATTTCCG		58	18209184	18209202	GCCTCTATCATCAGTTCCG		59	NA	
Drosophila melanogaster	50	CG31465	FBgn0051465	FBtr0084147	3	1	1	99	3R	17708823	17708841	GTCAAGCAATCAATCGTCG		59	17708961	17708979	CCAGGATCCGTTTAGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	2	22	22	85	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202453	17202548	GTTCAGGAATACGATAGCG		57	NA	
Drosophila melanogaster	50	Stat92E	FBgn0016917	FBtr0089484,FBtr0089485,FBtr0089487	1	3	5	91	3R	16365052	16365134	TCAAAGCGTCAAGATCCTG		59	16364979	16365001	GTTCCACTAGTAGATCCATTCTC		59	NA	
Drosophila melanogaster	50	CG6195	FBgn0038723	FBtr0083803	3	1	1	124	3R	15473742	15473761	GGATTTGATGTGCTCAAGAG		58	15473584	15473655	GTGAACTCATAGTTTGCCG		58	NA	
Drosophila melanogaster	50	fray	FBgn0023083	FBtr0083638,FBtr0083637	2	2	2	60	3R	14413095	14413116	GATCATGGCTATGACTTTAAGG		58	14413134	14413155	CCATTTCGATAGCTGTTATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Keap1	FBgn0038475	FBtr0083423,FBtr0083424,FBtr0083422	2	3	3	83	3R	12901902	12901979	AAATTTCACTCAGGTGTGC		58	12901837	12901856	AGTTCATCCCTTCGTATCAG		58	NA	
Drosophila melanogaster	50	CG10324	FBgn0038454	FBtr0083356	1	1	1	135	3R	12471665	12471756	ATGGCAAGTGCATAAACAC		59	12471548	12471568	CGGTCTGATCTAATTTCTTCC		58	NA	
Drosophila melanogaster	50	CG10345	FBgn0027562	FBtr0083360	3	1	1	120	3R	12424212	12424287	TATGGAGAAGCTCTTCCGA		59	12424110	12424129	GCTATCCACGGTATAACCAC		59	NA	
Drosophila melanogaster	50	CG6006	FBgn0063649	FBtr0113476	2	1	2	121	3R	11995750	11995823	TTACCTCTTAACAAGATCGAGG		59	11995905	11995923	TGGTTGTCTGTCTTCTGAC		59	NA	
Drosophila melanogaster	50	Akt1	FBgn0010379	FBtr0083226,FBtr0083228,FBtr0083227	2	3	3	108	3R	11928589	11928607	GACAAGGAGTTTACGGGAG		59	11928679	11928768	CTCCTTGGTAGCTGAACTG		59	NA	
Drosophila melanogaster	50	Tm2	FBgn0004117	FBtr0083080	2	1	3	104	3R	11138919	11138938	TGTCCATCAAGTTGAAGGAG		59	11139005	11139327	CATTGAAGAGACGGTCCTC		59	NA	
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089963,FBtr0089966,FBtr0089967,FBtr0089962,FBtr0089961,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	3	10	12	206	3R	11120874	11120892	TTGCTCGAAGAAGACTTGG		59	11122405	11122424	GTATTTCTTGTCAGCCTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4210	FBgn0038302	FBtr0083049	3	1	2	80	3R	11039816	11039898	TCTCCATGATTCAAGAACTGG		59	11039938	11040026	CGTCTCGTTTAAGATCTTCCT		59	NA	
Drosophila melanogaster	50	Zeelin1	FBgn0038294	FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034	2	4	5	121	3R	11002151	11004015	CTACAGCCGAACAATTCCA		59	11001978	11001996	GCTTGTCCCTCAAGTAGAG		59	NA	
Drosophila melanogaster	50	trx	FBgn0003862	FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949	3	5	5	118	3R	10091224	10091245	ATGAAGTATCGGACTCTTAAGG		59	10091050	10091145	TCGATAACCATTTCACCCG		59	NA	
Drosophila melanogaster	50	Art9	FBgn0038188	FBtr0082879	2	1	1	85	3R	9768735	9768756	GAAGGTCGATATAATAGTGTCC		57	9768612	9768630	TTTCTCTGGCAAAGATCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14367	FBgn0038170	FBtr0082819	2	1	1	163	3R	9520223	9520241	TTCATACGGATGATGACGC		59	9520516	9520534	ATCATTTGTTCCACCTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9759	FBgn0038160	FBtr0082861,FBtr0082862	3	2	2	73	3R	9434792	9434810	TCTGGCGGATGTAAATCAG		59	9434737	9434755	CGAATCCAAATTGTCTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8138	FBgn0038122	FBtr0082732	2	1	1	60	3R	9007633	9007652	TGACAACGACAATTATACGG		57	9007673	9007693	CTTGTGAGCAAACATAAGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(fu)	FBgn0005355	FBtr0082665	1	1	1	60	3R	8516969	8516987	CAACTATCCCGGAGATGTG		59	8516927	8516946	TCCGAAACTAATGTAGTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18765	FBgn0042110	FBtr0113346	1	1	1	193	3R	7516534	7516555	CAGCTGTATACGATCTATTCAG		57	7516308	7516380	AGTTTCAAATGCCCAATGG		58	NA	
Drosophila melanogaster	50	CG6790	FBgn0037915	FBtr0082460	2	1	1	60	3R	7402819	7402840	CACCTAAGATGGATTGTAGGAC		59	7402780	7402799	GACAGTTGCAGTAAATCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL3	FBgn0020910	FBtr0082349,FBtr0082346,FBtr0082348	1	3	5	92	3R	7048444	7049127	AAGAACTGGTACAAGAGCA		58	7049183	7049201	GAAGTCATTCTCGATGCTC		57	NA	
Drosophila melanogaster	50	RpL3	FBgn0020910	FBtr0082349,FBtr0082346,FBtr0082348	2	3	5	93	3R	7048443	7049126	CAAGAACTGGTACAAGAGC		58	7049183	7049201	GAAGTCATTCTCGATGCTC		57	NA	
Drosophila melanogaster	50	Ugt86Dh	FBgn0040252	FBtr0082340	1	1	1	60	3R	7002629	7002649	TTTGGAAGACTGACTATCCAG		59	7002668	7002689	CATGTTCTAGCAAAGACATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tomboy20	FBgn0037828	FBtr0082316	2	1	1	60	3R	6561506	6561527	TATACTCTTCATGGGCTATTGC		59	6561467	6561485	GAAATCTGGATCACTCCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12946	FBgn0037750	FBtr0082159,FBtr0110789	1	2	2	97	3R	5597848	5597925	AGCTGAAGAAAGTGGATCAG		59	5597770	5597791	CTTCAGTTCACTTAGAAAGTCG		59	NA	
Drosophila melanogaster	50	CG8481	FBgn0037747	FBtr0100583	1	1	2	88	3R	5594552	5594654	TACTATGAAGGGCTTCCTC		57	5594706	5594724	GTGTCTTTCATAAGCTCCG		58	NA	Nonspecific
Drosophila melanogaster	50	PpD3	FBgn0005777	FBtr0082129,FBtr0082128	3	2	2	85	3R	5575740	5575758	GAGGTTAAGGATATGGGCT		58	5575804	5575881	CCCATAGTATCACAATAGTTCG		58	NA	
Drosophila melanogaster	50	ps	FBgn0026188	FBtr0082038,FBtr0111031,FBtr0111029,FBtr0111030,FBtr0082037,FBtr0111028,FBtr0111027	2	7	9	133	3R	5269786	5270772	CATATTCATCATGGCGAGAC		58	5270868	5270886	GACATCTTGACCCTAGCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	hyx	FBgn0037657	FBtr0081968	3	1	1	142	3R	4866917	4866935	AACACAAGCCTCATTACCA		59	4867200	4867218	GACACAGTCTGATTGTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9731	FBgn0037640	FBtr0081929	3	1	1	62	3R	4688228	4688246	GAATTCCCTCAGCAATTCG		58	4688184	4688203	TATATGAACCTTGGGTGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34301	FBgn0085330	FBtr0112497	2	1	1	74	3R	4599184	4599205	GATTTCCATTCCATACCTAAGC		58	4599240	4599258	CAGAAAGGTCTTCAGGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31453	FBgn0051453	FBtr0081898	1	1	1	66	3R	4386924	4386942	CATCTACGAGACAGGACTC		58	4386813	4386831	TTCAGAGAACATCAGTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	stck	FBgn0020249	FBtr0081845,FBtr0081846,FBtr0081844	2	3	3	221	3R	4184861	4184937	GCTAACGATATGAACGAACTG		59	4185120	4185138	CTGATGATAGTGCGTCTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	ImpE3	FBgn0001255	FBtr0081819	3	1	1	60	3R	3855105	3855125	AACCTACTGACTAGCTATCTG		58	3855065	3855084	GCAGGTCAATATAGTATGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2747	FBgn0037541	FBtr0081818,FBtr0081817	2	2	2	127	3R	3844030	3844048	AATCGAATCGTTGTATGCG		58	3842719	3843939	TCTGAATATGGTTCTGCGG		59	NA	
Drosophila melanogaster	50	CG14463	FBgn0037535	FBtr0081783	1	1	1	108	3R	3826375	3826455	CCCTATTCAATAGTCAATCCC		57	3826525	3826543	CTGTAGGACTCTTCTGACC		58	NA	
Drosophila melanogaster	50	CG31473	FBgn0051473	FBtr0081749	3	1	1	84	3R	3638237	3638255	CCAGCCTATACGAATTCGG		59	3638303	3638321	CTTGGCATTTCAAGACACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31472	FBgn0051472	FBtr0081747	1	1	2	108	3R	3636465	3636483	AACAATTCGAAGGATGAGC		58	3636620	3636640	CTTCACCTTGATGTTATCCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	gfzf	FBgn0053546	FBtr0114531,FBtr0091512	3	2	2	125	3R	2972597	2972676	GTACTCGAAGATGAATCCG		57	2972490	2972508	GGATATAGCGTTGAATCCG		57	NA	
Drosophila melanogaster	50	Antp	FBgn0000095	FBtr0081648,FBtr0081652,FBtr0081651,FBtr0081649,FBtr0081650,FBtr0081647,FBtr0081656,FBtr0081654,FBtr0081653,FBtr0081655	3	10	11	256	3R	2734435	2734453	AGAACCATCACAACATGGG		59	2724211	2724230	TAGCTCTAGAGTCTGGTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33324	FBgn0053324	FBtr0081727	1	1	1	63	3R	2273072	2273090	CACCATCACAAGTCATCCA		59	2273117	2273135	GACTGTCCATTGACCAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15594	FBgn0037421	FBtr0078604,FBtr0078603	3	2	2	61	3R	2113813	2113832	CTACAACCATCGCTATAACG		58	2113853	2113874	GAGGATTCGGTTTGTAATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1075	FBgn0037397	FBtr0078583	1	1	1	66	3R	1854303	1854426	GCGAACAACATGTTATTTCC		58	1854455	1854473	AAAGCTTCGGTAAGACAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078675,FBtr0078672	3	2	5	166	3R	1586675	1587377	ATTCGGACATCAAATCGTG		58	1586471	1586489	GGATGACATCTACCTTGCA		59	NA	
Drosophila melanogaster	50	Gel	FBgn0010225	FBtr0078971,FBtr0078968,FBtr0078973,FBtr0078972,FBtr0078969	1	5	5	135	3R	66120	66138	TCAATACGAGCAAGAGGAC		59	66237	66319	AAAGTAAAGCTTTGCCGTG		59	NA	
Drosophila melanogaster	50	CG14641	FBgn0037220	FBtr0078985	2	1	1	60	3R	57928	57946	ACTAACACCTATAACCGGC		58	57886	57904	AAGTTTGGCACAGAATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pncr014:3L	FBgn0046272	FBtr0091955	3	1	1	76	3L	14027883	14027901	CGATGTAAGACAGTTGTGG		58	14027825	14027843	ACTATTGCAATCTGCTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32385	FBgn0047205	FBtr0076899	3	1	1	172	3L	6970529	6970547	TCTACTCAATAAGCGCAGC		59	6970849	6970868	ACTTCCAGCTGAGTAATTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32462	FBgn0052462	FBtr0078579	1	1	1	67	3L	22845611	22845629	GATGCTACTCTACTGCGTG		59	22845562	22845580	TATAAAGCCGGAACTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mub	FBgn0014362	FBtr0078469,FBtr0078468,FBtr0078470	2	3	4	154	3L	21914292	21914310	AGATTCGCCAAATATCCGG		59	21914425	21918298	AGCAGTCTCCATTGATATTCTC		59	NA	
Drosophila melanogaster	50	AP-2	FBgn0023417	FBtr0078419,FBtr0078418	2	2	2	222	3L	21602979	21604253	GACATGTCACCCAATTGTC		58	21604439	21605101	TTCATGCTCTTTATGAGCG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Pros54	FBgn0015283	FBtr0078368	2	1	1	111	3L	21530466	21530544	GATGACTCTGTCCAACACC		59	21530619	21530637	GGTCAGGAGGTTTATCTCG		59	NA	
Drosophila melanogaster	50	CG7611	FBgn0037094	FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362	2	8	8	109	3L	21518809	21519094	ACCTTAAGGACCTAGAGCC		59	21519167	21519185	ATTGCCATCATCCAAATGC		59	NA	
Drosophila melanogaster	50	CG33054	FBgn0053054	FBtr0078316	1	1	2	90	3L	21190672	21190690	AATTGATGGCTTGGAATGG		58	21190542	21190561	TGCTATGAAGTAAATGGCTC		57	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	eRF1	FBgn0036974	FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177	2	6	6	81	3L	20344340	20344433	AATTTCTCAGGATACTGGCA		58	20344477	20344495	GAGAGTCTCTACAGAGCCA		59	NA	
Drosophila melanogaster	50	wnd	FBgn0036896	FBtr0074963,FBtr0074965,FBtr0074964	3	3	3	120	3L	19620630	19620649	ATATCCGAATGGTGTACGAG		59	19620470	19620547	AGTTTCCGTTCTCGTTCTG		59	NA	
Drosophila melanogaster	50	Taf6	FBgn0010417	FBtr0074941	2	1	1	109	3L	19593329	19593350	CAAGAACTTCAATACCCTAACC		58	19593477	19593495	CAATAGAGCCGTAAAGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3961	FBgn0036821	FBtr0075077,FBtr0075078	2	2	3	121	3L	18880248	18880266	ATTAACCCTAGGAAGCCTG		58	18874336	18880163	GTATTTGTTCTGGACCCTC		57	NA	
Drosophila melanogaster	50	Ugt	FBgn0014075	FBtr0075064	2	1	1	60	3L	18868923	18868943	CAGTTCTCTACAGTATAGCGA		58	18868964	18868983	GACATCTTGAGCAGATTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14074	FBgn0036818	FBtr0075061	3	1	1	60	3L	18860005	18860025	TGGTCAATTACTAAACCCGAG		59	18860047	18860065	GGAGGAGTGTTCCTTAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rpr	FBgn0011706	FBtr0075120	3	1	1	64	3L	18391231	18391249	GTCACAGTGGAGATTCCTG		59	18391185	18391204	GATGACATGAAGTGTACTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34253	FBgn0085282	FBtr0112447	3	1	1	60	3L	18079935	18079954	ATTACATTACCGTCGAAGGA		58	18079894	18079912	TCTTCCAAGTGATCGTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5290	FBgn0036772	FBtr0075152	3	1	1	92	3L	17904860	17904934	GAATCAAAGGTCCTGATTTGG		59	17904788	17904806	AAACTGCTCATACAGGGAG		58	NA	
Drosophila melanogaster	50	CG13725	FBgn0036708	FBtr0075248	3	1	1	60	3L	17318311	17318332	GGATTAAAGGTGGCTATTATCC		58	17318272	17318291	CAGCTTCTTCTCTAGTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lmpt	FBgn0036672	FBtr0089452,FBtr0089453,FBtr0089458,FBtr0089459	3	4	8	133	3L	16890156	16890174	ACAGATCTCTTACCAGCTG		58	16890271	16890492	TGATGTAGGCTATGTCCAG		58	NA	
Drosophila melanogaster	50	CG13036	FBgn0036626	FBtr0075416	3	1	1	97	3L	16384420	16384438	GAGCATTCGATTATGGTGG		58	16384341	16384359	AGTAGAGCCGGAATTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GXIVsPLA2	FBgn0036545	FBtr0075509,FBtr0075508	3	2	2	65	3L	15948604	15948622	GAACTGCATATACCAGTGC		58	15948714	15948732	TTATTCTGAACCGCTCTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34451	FBgn0085480	FBtr0112757	1	1	1	120	3L	15682351	15682452	TACCCATGAGTCCTTTGTC		58	15682249	15682267	ATATCCCTCCCAATGAGTG		58	NA	
Drosophila melanogaster	50	mnd	FBgn0002778	FBtr0075627,FBtr0114529,FBtr0075626	2	3	3	86	3L	14983805	14983823	TAATTGCCTGACACCTGTG		59	14983960	14983979	ATTAGTACGTAGACGTCCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	RpS4	FBgn0011284	FBtr0075885,FBtr0075884	2	2	2	162	3L	13035414	13035433	GTTAAGGTCGATGGAAAGGT		59	13035631	13036275	ACAACTTGTACTTGGCCTC		59	NA	
Drosophila melanogaster	50	RpS12	FBgn0014027	FBtr0075878,FBtr0075880	3	2	2	82	3L	13016618	13016843	GTTGATGTTGATGTTCCCTC		58	13016888	13016906	TTCTTCAAGACCTCCTGGA		59	NA	Nonspecific
Drosophila melanogaster	50	RpL10Ab	FBgn0036213	FBtr0076034	3	1	3	94	3L	11816586	11816605	AATTTGAGTAGGTCTCCAGC		59	11816662	11816772	GGAATGTGCTTCAACAAGG		59	NA	InUTR
Drosophila melanogaster	50	Mob1	FBgn0036172	FBtr0089331,FBtr0089330,FBtr0089333,FBtr0089332	2	4	4	160	3L	11520315	11520333	CTAGTGGATCTTCCAGCTG		59	11518602	11518687	CATAAGTACGTTCTGTTGCC		58	NA	
Drosophila melanogaster	50	CG32066	FBgn0052066	FBtr0076278,FBtr0076277	1	2	2	155	3L	10634683	10634701	ATGATGTCCAGAACACGAC		59	10634480	10634498	CATGGTCGTAGAGGATCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32056	FBgn0052056	FBtr0076303,FBtr0076301,FBtr0076302	1	3	3	85	3L	10214550	10214568	TTCTTCGGCATCAATTTCC		58	10214222	10214501	AACATGGCATCTATGAGGA		58	NA	
Drosophila melanogaster	50	CG32043	FBgn0052043	FBtr0114368,FBtr0076465,FBtr0114367,FBtr0076466	3	4	4	108	3L	9463440	9463459	AAATTCGCTCGATATCTGGG		59	9463530	9463670	CCTTCGTGTAGATTTCCGT		59	NA	
Drosophila melanogaster	50	CG3911	FBgn0035992	FBtr0089879	3	1	1	221	3L	9432383	9432401	AGTTCTCCCTGGTATTCGA		59	9432082	9432100	GTATGACCTCCTCTAGACG		57	NA	DesignNoJunction
Drosophila melanogaster	50	smg	FBgn0016070	FBtr0076549,FBtr0076550,FBtr0076551	3	3	3	135	3L	8986300	8986318	CAGTCAACTCAAGGACCTG		59	8986126	8986203	AGTCTTACCATTCCATCTTGG		59	NA	
Drosophila melanogaster	50	smg	FBgn0016070	FBtr0076549,FBtr0076550,FBtr0076551	1	3	3	132	3L	8986300	8986318	CAGTCAACTCAAGGACCTG		59	8986129	8986205	CTTACCATTCCATCTTGGCT		59	NA	
Drosophila melanogaster	50	TrpA1	FBgn0035934	FBtr0113155	3	1	2	172	3L	8890196	8890214	CAGGACAAGTGCATTACCA		59	8889437	8889632	GTTACCATGGTGTTCACCA		59	NA	
Drosophila melanogaster	50	CG32026	FBgn0052026	FBtr0076584	1	1	1	60	3L	8830875	8830895	AATAGCCAAGGTATGACATCG		59	8830916	8830935	CTTTCGTTCGGTTCATACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gug	FBgn0010825	FBtr0076619,FBtr0076618	2	2	4	81	3L	8463408	8463429	CCAAATATGCTTATACCTAGGG		57	8463468	8463540	CCTGTAAATACTGTAGTTGGTC		58	NA	
Drosophila melanogaster	50	Ect4	FBgn0085402	FBtr0112598,FBtr0112601,FBtr0112602,FBtr0112600	3	4	5	87	3L	8092628	8096003	GTCATTAAGGAAGCCCTCTC		59	8096053	8096071	TTTGCACCGTAATACTGGA		58	NA	
Drosophila melanogaster	50	MED4	FBgn0035754	FBtr0076889	1	1	1	130	3L	7243091	7243109	ATACGCACATCGGATTAGC		59	7242979	7242997	TGTTCTGCTCGGATTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	form3	FBgn0053556	FBtr0091533,FBtr0113469	2	2	2	92	3L	7112367	7112446	GTGCCCAATTACAAATTGC		58	7112500	7112520	CATAGAATTGATACAGGGCTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	sgl	FBgn0010851	FBtr0076938	2	1	1	176	3L	6954940	6954959	ATCTTCATCTCGGTGAACAC		59	6954300	6954318	TATGTGCATGATGCTCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Uev1A	FBgn0035601	FBtr0077155	3	1	2	179	3L	5359234	5359252	CGAATACATCAAGTACCGG		57	5357297	5358048	TCTCGAATGGTGTTCTAGG		58	NA	
Drosophila melanogaster	50	Srp54k	FBgn0010747	FBtr0077169	3	1	1	60	3L	5147367	5147386	TGACCAAGAATGTGAATCCA		59	5147409	5147427	ATCATCTTCGCTATCTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13704	FBgn0035583	FBtr0073353	1	1	1	143	3L	4899024	4899042	TACTTGGTGATATGCCTGG		58	4900437	4900455	TACACAAACGATGAGAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	1	9	15	80	3L	3083795	3084812	CTCGCCACTTATATGAATCG		58	3084852	3084873	CAAATTAAGTAGTGAGAACCCG		59	NA	
Drosophila melanogaster	50	msn	FBgn0010909	FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956	3	5	5	104	3L	2556720	2556801	AGCAATAGAGATACGTTCCG		59	2556635	2556654	AATACTTTGTCGTTTCGCTC		58	NA	
Drosophila melanogaster	50	CG13810	FBgn0035313	FBtr0072870	1	1	1	229	3L	2186149	2186167	TTCTCCTTGGGTTACTACG		58	2186360	2186505	TAACTAACAGCCAGCTGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	zormin	FBgn0052311	FBtr0110857,FBtr0110858,FBtr0089864,FBtr0110856	1	4	4	128	3L	2132574	2134108	GATTCCAAGTACGAATACGG		58	2132465	2132483	TACTATCACGTTGCAACTG		57	NA	
Drosophila melanogaster	50	CG1887	FBgn0035290	FBtr0113125,FBtr0072859,FBtr0113124	3	3	3	67	3L	1894438	1894614	AATACAACCGAAACTTGGAG		58	1894390	1894411	GTGTCACTTTAAGATTCAGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8001	FBgn0035268	FBtr0072774	2	1	1	91	3L	1758644	1758723	GACCTGAAAGGAAACTCCC		59	1758776	1758796	GATGTCGAGGTCAATACTCTC		59	NA	
Drosophila melanogaster	50	CG13931	FBgn0035258	FBtr0072802	3	1	1	80	3L	1701475	1701493	TTCAATCACTACTCGCGTC		59	1701413	1701431	TAGGTCTACAAAGTCGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7879	FBgn0035235	FBtr0072827,FBtr0072826	2	2	2	205	3L	1564036	1564054	ATTCGAAACTTCTTCTCGG		57	1562881	1562899	CGAGCAGTCTCAATAACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ptp61F	FBgn0003138	FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718	1	4	4	143	3L	1346059	1346077	GAAACAGATCAAGTGCCAC		59	1345856	1345953	TCGGTTAATTTGAACCATCG		58	NA	
Drosophila melanogaster	50	CG2469	FBgn0035205	FBtr0072668,FBtr0072669	2	2	2	94	3L	1308864	1308885	GGCCAGATGTATATTTATCGAG		58	1308997	1309015	TTCATGGTCTCGTAGTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32333	FBgn0052333	FBtr0100256,FBtr0072662	2	2	2	253	3L	1285102	1287941	ATCTGCTAGTTGACAGTCG		59	1288158	1288176	ATGGAAGTAGTCGAACAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Ptpmeg	FBgn0035133	FBtr0072545,FBtr0072542,FBtr0072544,FBtr0072543	3	4	4	80	3L	354436	354509	CATATCACCATATGACTGCAC		58	354551	354569	ATGTTTACGTAGTTGGCGT		59	NA	
Drosophila melanogaster	50	CG34413	FBgn0085442	FBtr0112685,FBtr0112684,FBtr0112683,FBtr0112686	2	4	4	80	2R	20770531	20770606	TTCCTGCAAGTGATAACGA		58	20770649	20770668	AAAGTTCACTAGGATAGGCG		59	NA	
Drosophila melanogaster	50	CG3209	FBgn0034971	FBtr0072178	1	1	2	111	2R	19958425	19958446	CCACAATAAGCAATATAAGCCC		59	19958517	19959522	CCACACTACCAAAGAGTAGG		59	NA	
Drosophila melanogaster	50	CG4324	FBgn0034956	FBtr0114534,FBtr0072197	1	2	2	114	2R	19903665	19903743	GTTCCACAGTCAGTTACCT		58	19903511	19903529	CTAGGACCACTTCAAAGCA		59	NA	
Drosophila melanogaster	50	CG4019	FBgn0034885	FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103	1	4	4	213	2R	19495764	19495782	TCGAGTTCGTAATCACCTC		58	19495489	19495507	TAGATCCAGTTGCTCTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9826	FBgn0034784	FBtr0071895,FBtr0071894	3	2	2	60	2R	18729076	18729095	CAAGTACATCGAATCTTCGC		59	18729118	18729136	AATTGGTATGGTACGACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4269	FBgn0034741	FBtr0071854	1	1	1	69	2R	18487631	18487649	ATTCGTCTATCCCATGTGC		59	18487682	18487700	GAAGTACACATACTCCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6018	FBgn0034736	FBtr0071835	1	1	1	60	2R	18438339	18438357	GGACTGAAGGACCAAATCC		59	18438378	18438399	CATTGAAACTGGCTATGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4386	FBgn0034661	FBtr0071743	3	1	1	60	2R	17687893	17687911	TATGTTGCTATATGGCGGA		58	17687851	17687869	CAGGAATTGATCGTTGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PTP-ER	FBgn0016641	FBtr0071686	3	1	1	60	2R	17509896	17509915	TCAAATCACAGTATCACCCT		58	17509855	17509873	AGTTTAGATCTCCACACGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rgk3	FBgn0085426	FBtr0112647,FBtr0112646	1	2	2	88	2R	17159712	17159730	CATGAACATGCATCACCTG		59	17159782	17163660	TGATGATACCTCCCTTGGA		59	NA	Nonspecific
Drosophila melanogaster	50	CG15653	FBgn0034578	FBtr0071545	3	1	1	61	2R	16947878	16947898	GCTGTGATGTACATGAAATGG		59	16947837	16947855	AGTTTGTAGTACTCTGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494	2	7	7	151	2R	15418201	15419688	TATTGAGGGTAAAGGCACC		58	15418068	15418088	CTCAATTGTAGATGTCCACCT		59	NA	
Drosophila melanogaster	50	CG15105	FBgn0034412	FBtr0086572,FBtr0114622,FBtr0086573	2	3	3	97	2R	14894067	14895103	TAGCCGATAGATACAATCATCG		59	14895161	14895179	ATTGAATTTGCCATCTGCG		59	NA	
Drosophila melanogaster	50	CG15082	FBgn0034397	FBtr0086617	2	1	1	123	2R	14720045	14720063	GAAGTCAAGGCTAAGAGGG		59	14720150	14720168	TATATCGGAGTGAGTCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6484	FBgn0034247	FBtr0086903	3	1	1	60	2R	13471101	13471119	ATTCATTCTTGGCATGTGC		59	13471059	13471077	CTCTGTACAGTACATGGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30460	FBgn0050460	FBtr0087011,FBtr0087009,FBtr0087010,FBtr0113378	3	4	5	103	2R	12959348	12959484	AATCTGAAGACCAAGAGATCC		59	12959265	12959283	GACATCAGGTTTGGTTTGG		58	NA	
Drosophila melanogaster	50	Acp53C14a	FBgn0034152	FBtr0087082	3	1	1	60	2R	12635892	12635910	CACTATCTGCGATGTTTGG		58	12635850	12635870	TAGAGTTCTCGATCATTAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	csul	FBgn0015925	FBtr0089872,FBtr0089871	2	2	2	89	2R	12153286	12153304	CAAACTCTATCAGGATGCC		57	12153356	12153435	AGTAGCATTACAACTGTCAG		57	NA	
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	3	5	7	82	2R	11836642	11836721	TTTGCTACGTGCTACTCTC		59	11836578	11836599	ATCCGCTCTAGTTATATTCGAG		59	NA	
Drosophila melanogaster	50	hbs	FBgn0029082	FBtr0087414,FBtr0087413	2	2	2	129	2R	10924646	10924866	TTTGACTGTCCTGTATGCT		58	10924959	10924977	TATGGACCAGCTAATTCGG		58	NA	
Drosophila melanogaster	50	CG7639	FBgn0033989	FBtr0087424	2	1	2	166	2R	10876202	10876280	TGGTTGGAGTGGATTTGAC		59	10876054	10876072	GAATACGTTTCCATCCCGA		59	NA	
Drosophila melanogaster	50	aPKC	FBgn0022131	FBtr0110996,FBtr0110997,FBtr0087426	3	3	6	101	2R	10849144	10849164	GCCAGATTATCATTACCACCA		59	10849002	10849081	TGGTAAATGGCTGATCCAG		59	NA	
Drosophila melanogaster	50	Cyp6a20	FBgn0033980	FBtr0087454	3	1	1	60	2R	10769904	10769922	CTAAGACCGTACTGATTCG		57	10769946	10769964	TCGTTATGAAATACTCCGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12863	FBgn0033948	FBtr0087500	3	1	1	99	2R	10508178	10508197	CTGTCTGTACAATATGTGCA		57	10508043	10508061	TGTTACAATCACCAGTCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8485	FBgn0033915	FBtr0087572,FBtr0087570,FBtr0087571,FBtr0087569	3	4	4	92	2R	10126046	10126142	GTTCACAGGGATCTAAAGC		57	10125972	10125991	CAAGAACTTGTTGCTAAACC		57	NA	
Drosophila melanogaster	50	mam	FBgn0002643	FBtr0087597,FBtr0087596	3	2	3	95	2R	9928271	9943272	CCCATGGTATTCAGGTGTC		59	9943331	9943349	TGAAGAAGACACCTTGCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG33155	FBgn0053155	FBtr0100453	3	1	3	100	2R	9842101	9842119	GCAGTGAAGTATTCACACC		58	9842183	9842201	AAAGTCTACGGTGAGTGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG6280	FBgn0033866	FBtr0087628	2	1	1	182	2R	9643168	9643186	ATCGAAGGTCCAAACTTGG		59	9643453	9643471	GTAACCATGTCCATTGGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30487	FBgn0050487	FBtr0087802	2	1	1	60	2R	8825295	8825313	TTCTCTAATGGAGGCACAG		58	8825253	8825274	GCTCTTCGAAATTAACTTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17574	FBgn0033777	FBtr0087816	2	1	4	164	2R	8756493	8756511	TTCCTCATCATGAGTTGCT		58	8737633	8737651	AGTTACGTAGGCATTGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8818	FBgn0033751	FBtr0087941	2	1	1	207	2R	8405343	8405361	CAAGAGCTAGTGGAGAGGA		59	8405040	8405058	ATTCACTGCAGGATTTGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8834	FBgn0033733	FBtr0113073,FBtr0087954	3	2	2	82	2R	8309523	8309597	GTGCTAGATGATGCAACCT		59	8309459	8309480	TTATCGTACTCTTGTCCATCAC		59	NA	
Drosophila melanogaster	50	SIP2	FBgn0061197	FBtr0089670,FBtr0089669,FBtr0089671,FBtr0089668	1	4	4	95	2R	8193372	8193449	ACAAAGCTACATGGTCTCG		59	8193295	8193313	TGAGCCTACCTTTGTTTGG		59	NA	
Drosophila melanogaster	50	Rep1	FBgn0024732	FBtr0087978	2	1	1	261	2R	7935685	7935986	CATTGGATCGATCCCACTC		59	7936211	7936229	CCATAAACTCCTTTCCCGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG30015	FBgn0050015	FBtr0088243,FBtr0113356,FBtr0113357,FBtr0088242	2	4	4	159	2R	6730710	6730728	TCGGATATACTGCGATCAC		58	6730477	6730588	GAATGGAAGTCTCCAATGTC		58	NA	
Drosophila melanogaster	50	CG12936	FBgn0033549	FBtr0088222	3	1	1	60	2R	6699390	6699409	TGATCGATCATTTCTCCAGC		59	6699432	6699450	TTGATCTTCAAATCGGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CAP	FBgn0033504	FBtr0088342,FBtr0088347,FBtr0088341,FBtr0088338,FBtr0088340,FBtr0088343,FBtr0088339	2	7	10	83	2R	6182437	6182455	GTCATTCGTCTGTTTCCGA		59	6182825	6183262	TCGATTGTTCTAGATTCCCG		59	NA	
Drosophila melanogaster	50	CG12911	FBgn0033501	FBtr0088336	1	1	1	80	2R	6146892	6146910	ATATGGATACGACAACCGG		58	6146954	6147036	CGATCGTAGTAGCGATCTC		59	NA	
Drosophila melanogaster	50	CG12744	FBgn0033459	FBtr0088378	1	1	2	80	2R	5763453	5763529	CTTCTTCAATCCGAATCTCTG		58	5763571	5763589	CTTCGCAAGACATATCCTG		57	NA	InUTR
Drosophila melanogaster	50	CG18446	FBgn0033458	FBtr0088376	1	1	1	60	2R	5759619	5759637	TAACACCCTTTGTTCAGTC		57	5759661	5759679	AATAAGTGCTGATCTGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trpl	FBgn0005614	FBtr0088471,FBtr0088472,FBtr0088473	2	3	3	87	2R	5652140	5652158	ATTCCCAAATAGGTCGCTG		59	5652208	5652286	ATTATAAGCCTCTTGGCCTC		59	NA	
Drosophila melanogaster	50	ltd	FBgn0002567	FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934	2	5	5	110	2R	5066194	5066212	ATGGATGAGTATGTGAGGG		58	5066041	5066123	GATGAGTATCTTATTCACGAGG		57	NA	
Drosophila melanogaster	50	Su(var)2-10	FBgn0003612	FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578	1	9	9	80	2R	5005945	5006020	TCATAGATGGCTACTTCCAG		58	5006060	5006081	CATCCTGATGAAGTTGAATCTC		58	NA	
Drosophila melanogaster	50	Mys45A	FBgn0033379	FBtr0088628	3	1	1	60	2R	5000759	5000777	TCCGCTGATATCATGATCG		59	5000717	5000737	TCACCGTCTTAGAATCATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8078	FBgn0033375	FBtr0088631	2	1	1	280	2R	4985933	4985951	ACATTATCTGCAAGTCGCA		59	4985563	4985581	ATATCCAGTGATGCCTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13743	FBgn0033368	FBtr0088662	3	1	1	105	2R	4936033	4937393	TTATAAGGTGACGGACACG		59	4935817	4935835	GAAGGTGTTGTGATGACAC		58	NA	
Drosophila melanogaster	50	CG30354	FBgn0050354	FBtr0088702	1	1	1	60	2R	4565030	4565048	AGGAATTGTTCGACTTCGT		59	4565072	4565090	TTCGAGAAGAGACTGTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8726	FBgn0033244	FBtr0088873,FBtr0088874	3	2	2	81	2R	3858089	3858107	ACAAGTGGCTACATATGGG		59	3857969	3858045	ATGTAGATGACCATATGCGT		58	NA	
Drosophila melanogaster	50	CG12825	FBgn0033221	FBtr0088829	2	1	1	136	2R	3677184	3677202	ATCTTCGGACCATTGATGG		59	3677362	3677380	ATGAACTCCTTCTTGTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12107	FBgn0033209	FBtr0088924	3	1	1	111	2R	3562262	3562280	GTATTCGGCATCTTTCTGG		58	3562425	3562443	TTATGGCGTACAGGTAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30492	FBgn0050492	FBtr0088917	2	1	6	132	2R	3525867	3526110	GGTGAAATTAGATCTGCCG		58	3526206	3526224	GATGGTCTCGATGAGACTG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0089016,FBtr0111061,FBtr0089017,FBtr0089019,FBtr0111074,FBtr0089018	1	6	60	122	2R	3219876	3231793	CAAGTTAATGTACCTCCCAG		57	3219773	3219792	TTTCTTCCATGTAACTTGGG		57	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111064,FBtr0111057,FBtr0111100	2	3	60	83	2R	3247002	3247020	CACCTTAAGGGAAAGAGCA		59	3236471	3246958	CTTGTACCATCTAAAGAAAGGC		59	NA	
Drosophila melanogaster	50	CG30385	FBgn0050385	FBtr0089047	1	1	1	60	2R	3069404	3069423	CCAATCTACAGTGACGATCC		59	3069446	3069464	AATTCCATTGATGCGAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33558	FBgn0053558	FBtr0086193,FBtr0113470	2	2	2	94	2R	2821425	2821581	TATCACGAAAGAGCTGTCC		59	2821349	2821367	ACATGTTCACATAGGTGGG		59	NA	
Drosophila melanogaster	50	tRNA:CR31669	FBgn0051669	FBtr0077860	1	1	1	60	2L	2013224	2013243	TGGTGTAATGGTTAGCACTC		59	2013183	2013201	TCCACCGAGATTTGAACTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spf45	FBgn0086683	FBtr0111239,FBtr0111240	3	2	3	160	2L	22960010	22960028	TGACGAAGAATTGGAACCC		59	22959807	22959888	CCACTACAGCTTTAATTGCAC		59	NA	
Drosophila melanogaster	50	Spf45	FBgn0086683	FBtr0111239,FBtr0111241,FBtr0111240	1	3	3	60	2L	22959896	22959916	ATATTCGTAGAGTTTAGGCGG		59	22959795	22959815	GTCCATTAAGGTCCACTACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL5	FBgn0064225	FBtr0111129,FBtr0111128,FBtr0111131,FBtr0111130,FBtr0111132	3	5	5	101	2L	22428914	22428932	CAGTACAGATCGCCTATGC		59	22428771	22428849	AGTTGGTCAATCCAACCTG		59	NA	
Drosophila melanogaster	50	CG31700	FBgn0051700	FBtr0085933	3	1	1	101	2L	22066968	22066986	AGGACAGTAAGGACTACCG		59	22069218	22069236	TTGTCCTTAATGGCATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ac3	FBgn0023416	FBtr0085897	2	1	2	86	2L	21644210	21646603	TTATCTGCAGGGTAAGTCC		58	21646652	21646671	TCTACAGCAGATGAATCCTG		58	NA	
Drosophila melanogaster	50	CG2201	FBgn0032955	FBtr0100510,FBtr0085921,FBtr0085922,FBtr0100511,FBtr0085923	2	5	5	85	2L	21616233	21616254	GTAATATTCTGATGCGACAACC		59	21615664	21616187	GTCGAAGTTGGATCTCAGG		59	NA	
Drosophila melanogaster	50	Hr39	FBgn0010229	FBtr0081481,FBtr0081480,FBtr0081479	3	3	4	154	2L	21256008	21256026	AAGATAACCCTATCGCAGG		58	21257042	21257115	AACTCTGTCGTATCTGACTG		58	NA	
Drosophila melanogaster	50	CG9243	FBgn0032926	FBtr0110945	1	1	2	146	2L	21166903	21166921	GAACTGGAGAGGATTTCCG		59	21166439	21166457	ATTCCCGAAATAGTCCTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9265	FBgn0032910	FBtr0081507	3	1	1	83	2L	21060033	21062276	AGACGAAGTTGGTGATATCAC		59	21059970	21059988	AGATGGTCAGGTGTATCCA		59	NA	
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445	2	8	8	80	2L	20877198	20877217	GTTCTGCAAGAAGATACCAG		58	20877072	20877156	ATATACTGGGTACTCAGTCC		57	NA	
Drosophila melanogaster	50	CG31674	FBgn0051674	FBtr0081423	3	1	1	71	2L	20832404	20832422	AGATGTTATGGATCCGGAG		58	20832456	20832674	GGAGTAACCACAACATTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13958	FBgn0032825	FBtr0081295	1	1	1	60	2L	19828687	19828705	AACTATGTGCTCTTCAACC		57	19828729	19828747	TGCGTATCTTGTACTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10462	FBgn0032815	FBtr0100351,FBtr0100352,FBtr0081325	1	3	3	90	2L	19733222	19733240	GACAAACGTTTCCGAACTC		59	19733057	19733169	CTAACGAGCATATCTTGCAC		58	NA	
Drosophila melanogaster	50	tj	FBgn0000964	FBtr0081239	3	1	1	153	2L	19464794	19464812	TCAGGAGTTTGATCTGCAC		59	19464928	19464947	GATTGTCGTCCATTTAACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17549	FBgn0032774	FBtr0081221,FBtr0081220,FBtr0081219	3	3	3	119	2L	19388088	19388108	CATCGATCCGTATCTATTCCA		58	19387719	19387737	ACTAGATTGTCGTGGTAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31751	FBgn0086909	FBtr0081092,FBtr0081093	1	2	2	70	2L	18682371	18682389	CAGATGCTGCTTTACTTGG		58	18682478	18682496	TACTTTCCTGTTGCATTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Fas3	FBgn0000636	FBtr0112805	1	1	4	236	2L	18384701	18384719	ATCTACAATCTGAGGGCCA		59	18387311	18388394	CTTGTCGATTTGAGTTTCGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG15153	FBgn0032663	FBtr0081045	1	1	1	71	2L	18091629	18091648	TATCCAGACTTTCACATCGC		59	18091577	18091595	TAGTACTGATCACAGCCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dif	FBgn0011274	FBtr0081008,FBtr0081009	2	2	2	80	2L	17417624	17417642	AGCTGAAACTAGTGAGACC		58	17415380	17417580	TTAGGAGTTCTGGATTCGG		58	NA	
Drosophila melanogaster	50	CG17912	FBgn0032600	FBtr0080893,FBtr0113041	3	2	2	176	2L	16744378	16744700	GCGTACAGTAATGCTACCA		59	16744837	16744858	CTGTGGATGCATAATCTTTGTG		59	NA	
Drosophila melanogaster	50	VhaSFD	FBgn0027779	FBtr0080941,FBtr0080940,FBtr0080942	2	3	3	122	2L	16724785	16724867	AACTTCCAGGTGCAATACC		59	16724681	16724700	ACAATCGCTGAGGATATCAG		59	NA	
Drosophila melanogaster	50	cact	FBgn0000250	FBtr0080844,FBtr0080845,FBtr0080847	2	3	4	127	2L	16314551	16314569	CGTGCATCATGAACAAGTC		59	16313442	16314462	ATCGTACATCTTCGTATCGTC		59	NA	
Drosophila melanogaster	50	Ca-alpha1D	FBgn0001991	FBtr0090004	1	1	4	88	2L	16181896	16182782	AGTACAACTCTTTAAGGGCA		58	16182893	16182912	CATAGACCAGATAGGTTCCG		59	NA	
Drosophila melanogaster	50	CG31735	FBgn0051735	FBtr0080791,FBtr0080790	2	2	2	76	2L	15896617	15896636	TTTAAGAGAAACCCATCTGC		57	15896768	15896789	GCAGTTCTTGGTAGTTTATGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CycE	FBgn0010382	FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775	2	5	5	97	2L	15729492	15729577	TACATTTAGTCGGGAGATGG		58	15729414	15729432	AGATCACTCGGAAGAATGG		58	NA	
Drosophila melanogaster	50	CG32971	FBgn0052971	FBtr0080621,FBtr0114463,FBtr0114462	1	3	3	60	2L	14277528	14277548	CTAAAGGATAACGTCCTAAGC		57	14277567	14277588	GGGAAACTAATTTAAGGAGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	smi35A	FBgn0016930	FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289	2	5	5	90	2L	14195795	14195814	CGGATGGATCTCATAATGTC		57	14189225	14195742	AGGTTCAAGCTCATTAGCT		58	NA	
Drosophila melanogaster	50	CG32972	FBgn0028905	FBtr0080599,FBtr0080600	3	2	2	132	2L	14164510	14164589	GAATGATGTGACTCTCACCA		59	14164397	14164415	CTGCAGGATATCTCCAACG		59	NA	
Drosophila melanogaster	50	rk	FBgn0003255	FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610	2	4	5	85	2L	13991706	13992947	GTGGTCGTCCTAGATTTGG		59	13991056	13991657	GTTAGCTCCTCCAGATTGG		59	NA	
Drosophila melanogaster	50	Ance	FBgn0012037	FBtr0080553,FBtr0080552	1	2	2	85	2L	13908583	13908661	TATCTGAGATACTTGGTCTCCT		59	13908707	13908725	TTGTCGGGATCATATTGGC		59	NA	
Drosophila melanogaster	50	Hsp60D	FBgn0032525	FBtr0080517,FBtr0080518	1	2	2	60	2L	13447731	13447750	CTCATCACTAAACAACCCAC		58	13447690	13447708	CAAGATCCTTGGTGACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6043	FBgn0032497	FBtr0089911	3	1	5	91	2L	13267890	13267909	TATATGGTTCGTCAGGATCG		58	13267963	13271304	TGTCCATACGACAATTCCA		58	NA	
Drosophila melanogaster	50	CG6043	FBgn0032497	FBtr0114471	1	1	5	148	2L	13274369	13276257	CTTTGGTGGTAATGGAGTC		57	13276455	13276473	ATGATCGACTGGGTATAGC		58	NA	
Drosophila melanogaster	50	CG15480	FBgn0032489	FBtr0080482	3	1	1	152	2L	13224950	13224968	CATTGTACCATCACCACTC		57	13224816	13224834	GTAGCATGTAAGCGTATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090023,FBtr0090018	2	2	17	197	2L	12726932	12726951	TTATATCAAGAGCGTTGGCA		59	12727111	12729197	AAGTACGAGGTAACTTGGC		59	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090023,FBtr0090026,FBtr0090022,FBtr0090029,FBtr0090025,FBtr0090014,FBtr0090024	2	8	17	185	2L	12724032	12724051	CGTGTTAAGTTGATGAACGA		58	12724334	12724773	TAATGAAACCAGGAACGGT		58	NA	
Drosophila melanogaster	50	CG33695	FBgn0052831	FBtr0091682,FBtr0091679,FBtr0091683	1	3	5	179	2L	11278648	11278666	AGCCTAAGCATCAAGAACC		59	11278890	11278908	GAATACTTGAGGAGGTGGC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG6287	FBgn0032350	FBtr0080222	1	1	1	137	2L	11152249	11152267	TTGGTTACGATCCCATCAC		59	11152018	11152150	ATATGAGATTTCTGGTGGCTG		59	NA	
Drosophila melanogaster	50	CG17140	FBgn0032306	FBtr0100838,FBtr0100837	2	2	2	60	2L	10843460	10843478	GGGCTACAATAATGGGAGG		59	10843360	10843380	TCGAAGATCCTCGAAATTCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0100487,FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100489,FBtr0100486	2	8	10	81	2L	10806032	10806052	AGCTACAGAAGGATCAAATCC		59	10805730	10805989	TCCTGCACATATGTCTTCG		59	NA	
Drosophila melanogaster	50	CG6737	FBgn0032294	FBtr0080120	2	1	1	65	2L	10736455	10736473	TCTTTATCGGCATGATCCT		58	10736408	10736426	CAATGATCAGGCCGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31716	FBgn0051716	FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012	1	6	6	83	2L	10400605	10400623	AAGTCGAAGGATGCTTACC		59	10400669	10400743	ATAGCGCATCTGTTACTCTG		59	NA	
Drosophila melanogaster	50	CG13138	FBgn0032211	FBtr0080066,FBtr0080067	2	2	2	60	2L	10300312	10300332	CCATTCTCCATACCATTTCAG		58	10300272	10300292	GTATAGGACTTTGAAAGGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rsf1	FBgn0011305	FBtr0080079	3	1	1	88	2L	10263366	10263384	TGTATGTCGGCAATCTGAC		59	10263296	10263314	TATCCACACCGAATTCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15828	FBgn0032136	FBtr0079843	3	1	2	157	2L	9643295	9643402	TATAAAGTGATGCAGACCCTG		59	9643519	9643539	ATAATCTGCTGAACTCGAAGG		59	NA	
Drosophila melanogaster	50	CG12439	FBgn0032094	FBtr0079767	3	1	1	60	2L	9077470	9077488	TTCACCGAAATAATCCTGC		57	9077509	9077530	TAAATCGATAGGTCATCCTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31897	FBgn0051897	FBtr0079673	1	1	1	60	2L	8445313	8445331	CAGGACAAGACTCCTACAG		58	8445353	8445373	GCTCCATTCGTTTCTTATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8451	FBgn0031998	FBtr0079637	2	1	1	83	2L	8202398	8202477	TCTGGATGAGATTCTGTTTCTG		59	8202278	8202296	ACATGGAGATTAATGCCCG		59	NA	
Drosophila melanogaster	50	CG7231	FBgn0031968	FBtr0079530	1	1	3	143	2L	7984801	7985561	CTACTATTTGTGCTCGTGG		57	7985666	7985686	TACCTTCATCATATCCGACTG		58	NA	
Drosophila melanogaster	50	CG13796	FBgn0031939	FBtr0114496,FBtr0079504,FBtr0079503,FBtr0079505	2	4	4	81	2L	7728559	7728579	GTGTGCCTTACTCATATTACC		58	7728434	7728516	CAACGTGATCCTCAAAGTG		58	NA	
Drosophila melanogaster	50	Myo28B1	FBgn0040299	FBtr0079474,FBtr0079476,FBtr0079475,FBtr0079473	2	4	4	90	2L	7682050	7682123	TCTTCAAGATGGAACAGGA		57	7682176	7682195	ATTAGATCGAGGATTTGCTG		57	NA	
Drosophila melanogaster	50	CG4496	FBgn0031894	FBtr0079419	1	1	1	88	2L	7186888	7186906	TGTACGAATGTCCTGACTG		59	7186753	7186836	GAATGGTCTTTCACCTGTG		58	NA	
Drosophila melanogaster	50	Mnn1	FBgn0031885	FBtr0079402,FBtr0110978,FBtr0079401	3	3	3	113	2L	7057576	7057594	ACATCGAGCTGTCTTTGAC		59	7057670	7057878	TGATGTCATTTCCACCTGTC		59	NA	
Drosophila melanogaster	50	CG18304	FBgn0031869	FBtr0079367	2	1	1	81	2L	6933469	6933487	TAACTCCTCCAACAATGGC		59	6933326	6933425	GCGCCAAATATTCTGATCTC		59	NA	
Drosophila melanogaster	50	CG11322	FBgn0031856	FBtr0079387	3	1	1	60	2L	6758241	6758259	CTACTACTGCCAGTTCGAG		59	6758199	6758217	CCAATCGTACATCTCTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr	FBgn0015623	FBtr0079250	1	1	2	98	2L	6342339	6342734	TATTCCATACAACCCACCA		57	6342796	6342814	ATAGAAGACGACCAGACTG		58	NA	
Drosophila melanogaster	50	Pez	FBgn0031799	FBtr0079284	3	1	1	93	2L	6333549	6333567	CTTCTTCACTGTCTGGAGG		59	6333412	6333492	TATCCAGGTCCTCATTGTG		58	NA	
Drosophila melanogaster	50	mtm	FBgn0025742	FBtr0079223	1	1	1	60	2L	6035375	6035394	AGTTCAACAACGCATTTGAG		59	6035334	6035352	TACAGATGATCCACGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11149	FBgn0031732	FBtr0079168,FBtr0079169	3	2	2	154	2L	5719427	5719525	AATGGTGGTATCACGTTGG		59	5719291	5719309	GGAAGTACACGTGAAAGGA		59	NA	
Drosophila melanogaster	50	CG17221	FBgn0031500	FBtr0077654,FBtr0077655	1	2	2	70	2L	3041355	3041376	CCAGGGAATTCAATTTCTACAG		59	3041462	3041480	CGTAGCTGCTATCGATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3605	FBgn0031493	FBtr0077669	1	1	1	80	2L	3027277	3027354	CATATTGGACCTTGATAATGGC		59	3027218	3027236	TCTTCTGACTCCGATTCCA		59	NA	
Drosophila melanogaster	50	oho23B	FBgn0015521	FBtr0077621,FBtr0077622,FBtr0077623	3	3	4	164	2L	2856560	2856643	CATTACCAAGAACTTCTAAGCG		59	2856766	2856786	AGCTAATCCTGGTTCTAACTG		59	NA	InUTR
Drosophila melanogaster	50	Drp1	FBgn0026479	FBtr0077744	3	1	1	113	2L	2583311	2583544	CAGATCTTAAGACTCGCGT		59	2583216	2583234	ACTTCGTGATGATCTGCAG		59	NA	
Drosophila melanogaster	50	CG17237	FBgn0031410	FBtr0077801	2	1	1	61	2L	2288675	2288693	GTAGGATCAACAAAGACGG		57	2288632	2288653	CCCATAGATAATGTCTTGAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7082	FBgn0031401	FBtr0077839,FBtr0077836,FBtr0077838,FBtr0077837	1	4	4	72	2L	2224635	2224653	CTATTACGTGGCCAAAGTC		58	2224747	2224765	ATCAGCTTTCTCCAATGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7289	FBgn0031379	FBtr0077815	3	1	1	171	2L	1984074	1984092	TACATAACCGAGGACAAGC		59	1984288	1984307	CTATGATTATTGCGCACACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33922	FBgn0053922	FBtr0091926	1	1	1	128	2L	1343758	1343776	TAACGTAACCGTAGATGGC		59	1343588	1343666	ATGATATCGTGGTCGTAGG		58	NA	
Drosophila melanogaster	50	Ipk2	FBgn0031267	FBtr0078074	1	1	1	69	2L	573416	573434	CTATGCCAGTTCTTTGCTC		58	573365	573383	GTTTATCAACGGCTTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0269	FBgn0029067	FBtr0077226	1	1	1	80	X	21192724	21192742	ATACTACAGACAGCACTGC		59	21192539	21192681	ATCCTATTTAGGTCACTGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32523	FBgn0052523	FBtr0077183	3	1	1	69	X	21089123	21089141	GTCATAATCTCGGCCACTC		59	21089174	21089259	CCGGAACTACATCATTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089658,FBtr0089660,FBtr0089657,FBtr0089661,FBtr0089659,FBtr0089662,FBtr0089663	3	7	7	83	X	17844790	17845235	CTAACTGTCAGGTTCCTCG		59	17844725	17844744	AATGATGGCGATTATGTCGA		59	NA	
Drosophila melanogaster	50	unc-4	FBgn0024184	FBtr0074460	3	1	1	216	X	17663629	17663647	AGGATCTAATGAGGATGGC		58	17670308	17670466	TCGATTCTGGAACCATACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32559	FBgn0052559	FBtr0074458	1	1	1	99	X	17629296	17629574	ACTGTGAATCTTCAGATTCG		57	17629636	17629654	TCTCGATGATGTCACATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8568	FBgn0030841	FBtr0074436	3	1	1	82	X	17345164	17346089	ATTCGATCAGAAAGTGTGC		58	17345100	17345118	GCCTGCCATTAAGAAAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8916	FBgn0030707	FBtr0074126	3	1	1	83	X	15818119	15818138	GGTTTCGCTACAGAATTCAC		59	15818181	15818260	TACGATGGATCGTTATATGTGG		59	NA	
Drosophila melanogaster	50	CG2061	FBgn0027498	FBtr0073429	1	1	3	188	X	10986739	10986819	AACTCGTATTTCGCTTCGT		59	10987088	10987106	AAGGGATTCTTCAGGTAGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	ras	FBgn0003204	FBtr0071496,FBtr0071494,FBtr0071495	2	3	3	90	X	10641988	10642006	TCTACCCTATTTGGAGTGC		58	10642057	10642149	GCCATTATAGATCATATCCCTC		57	NA	
Drosophila melanogaster	50	His3.3B	FBgn0004828	FBtr0071345,FBtr0071347,FBtr0071346	3	3	3	219	X	9048446	9048465	AGGATTTCAAGACCGATCTG		59	9048107	9048125	ACGACAGTGATCGAATCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12661	FBgn0030071	FBtr0071265	1	1	1	60	X	8817389	8817408	GAGAATCGCCTAGAGAAGTG		59	8817348	8817367	CCAAGCTATAATCGGATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tom40	FBgn0016041	FBtr0071074,FBtr0071073	3	2	2	126	X	7632815	7632934	CGAATCTGGTCTTCAGAGG		59	7633024	7633042	AAGTTGTTCTTCACGTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5062	FBgn0029747	FBtr0070759	2	1	1	127	X	5075716	5075735	ATTTCCACGACATTGATGAG		58	5075544	5075626	GTGTAGTACCTGCAATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3556	FBgn0029708	FBtr0070674	3	1	1	131	X	4427043	4427061	CTTCTTTAAGGCCATGACC		58	4427224	4427305	CAGTAGTGATACCCTCGAG		58	NA	
Drosophila melanogaster	50	mei-9	FBgn0002707	FBtr0070656	3	1	1	125	X	4211095	4211113	TGTGACCAAATCATTCCAC		57	4210928	4211007	ATGGTGGAGATCATTAAGCT		58	NA	
Drosophila melanogaster	50	Csat	FBgn0024994	FBtr0070501	1	1	1	242	X	2597434	2597549	ATAGCATACACATGAACGC		57	2596698	2596716	CAATGATGGTCTTGTGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14816	FBgn0023517	FBtr0070366	3	1	1	60	X	1766850	1766870	CAAGAGAAGGAGAGCTATACC		59	1766810	1766828	AGACAAAGTAGCGGATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pck	FBgn0013720	FBtr0070256,FBtr0070255,FBtr0100198	3	3	3	135	X	1365511	1365529	CCTTCATCATCGTGTTCCT		59	1365628	1365700	ATGAACAGAGACGAGATGG		58	NA	
Drosophila melanogaster	50	sphinx	FBgn0083990	FBtr0111045	3	1	3	61	4	996516	997393	GGGATGTACCAAACAAGTG		58	997415	997436	TCGATACTGACAGTATGTACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-3091a	FBgn0082979	FBtr0113579	1	1	1	69	3R	1422493	1422512	CTGGTACGTAATTGCAAGAG		58	1422443	1422461	ACGTTGTTCAGTGAATGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31002	FBgn0051002	FBtr0085813	1	1	1	60	3R	27220767	27220787	ATACACGATATTCCAGTTCCC		59	27220667	27220745	ATGCAATCCTAAGGACCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31126	FBgn0051126	FBtr0084663	2	1	1	130	3R	20485556	20485574	GAAGCCGGTATATCTGGAG		59	20485668	20485742	ATCGATGACGCTTGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	klg	FBgn0017590	FBtr0084337	1	1	1	83	3R	18784143	18784161	AGCTACAATCTGACCTGGA		59	18784208	18785280	CTCATTCATCTGCACTCGA		59	NA	
Drosophila melanogaster	50	CG17618	FBgn0040587	FBtr0113328	3	1	1	60	3R	18555467	18555542	TGATGCTTGTATCCTTGCT		58	18555564	18555584	GCAAAGCATACTGGATATACG		58	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG6439	FBgn0038922	FBtr0084190	3	1	1	157	3R	17843782	17843800	GACTTCGAGTGCTACTTCC		59	17843586	17843604	TTCATGTTAAGGGTCTGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CstF-64	FBgn0027841	FBtr0083660	2	1	1	64	3R	14485510	14485528	CGAGGAGAAGCTAAAGGAG		59	14485555	14485637	CAAAGACCAGTTTCAGTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rec	FBgn0003227	FBtr0083193	2	1	1	126	3R	11656166	11656184	TAAATCCGGTCCTAAACGA		57	11650575	11656076	ATTATCGCAAGAAGTTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	FK506-bp1	FBgn0013269	FBtr0083120	3	1	1	294	3R	11158533	11158735	GGTTTGAACATGAAGCCTG		59	11158190	11158208	CGATCGTCATTTGATCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Art6	FBgn0038189	FBtr0082878	3	1	1	107	3R	9771030	9771108	GGAAATGCTCTGTATATGGAG		57	9770943	9770961	TAACCAGAGGTTTCCAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Adgf-C	FBgn0038173	FBtr0082821	3	1	1	184	3R	9534069	9534090	TCTTAAGGATATAGTCGAGGTG		58	9534287	9534360	CACCAAACCAATTGGTCTC		58	NA	
Drosophila melanogaster	50	CG17202	FBgn0038043	FBtr0082587	3	1	1	91	3R	8248583	8248663	GTCCTTTAAGCCCATTGAC		58	8248718	8248736	GTATGAAGAGCTTGGTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6723	FBgn0037895	FBtr0082405	1	1	1	99	3R	7243950	7243968	CTAAACATCACCTCCACGT		59	7243697	7243832	GATAGGCCACATTCATAATGG		58	NA	
Drosophila melanogaster	50	CG33783	FBgn0053783	FBtr0091784	2	1	1	136	3R	5892590	5892608	TACGTGCTATGAGAAGTCC		58	5892708	5892904	ATAGCGATAGAATGCACGT		58	NA	
Drosophila melanogaster	50	RpS29	FBgn0037752	FBtr0082137	2	1	2	150	3R	5604291	5604310	AGATTCTTTGATGGAACCGA		59	5604423	5604499	GCTTCTTGAAGCCAATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8379	FBgn0037638	FBtr0081922,FBtr0081921	2	2	2	102	3R	4651044	4651062	TATCCTGGTCAACTATCGC		58	4651128	4651370	TATCATTTGGCCATAGCCA		58	NA	
Drosophila melanogaster	50	CG9821	FBgn0037636	FBtr0081931,FBtr0081932	2	2	2	179	3R	4644394	4644413	CAACATCAGAATGACAACCG		59	4644234	4644252	ATACTGTTGGAATGTGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31259	FBgn0051259	FBtr0081871	3	1	1	293	3R	4351253	4351344	TTTCAAGTCGACTACCTGC		59	4351601	4351619	AGGAACTTGTAGTAGCTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18747	FBgn0042104	FBtr0081778	2	1	1	108	3R	3609057	3609201	ACTTAAATTAGTCGCACTGG		57	3608496	3608517	CCACTTGGTTATAGAATATCCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10029	FBgn0037498	FBtr0081591	2	1	1	60	3R	3142358	3142379	TGAGTATGATAACTATCGCAGG		59	3142215	3142338	CACAAGGAACCTACAATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dj	FBgn0019828	FBtr0089741	3	1	2	99	3R	2885195	2885293	CTTGAGAACTTTAAGGAAGGG		58	2885354	2885372	CTTTCGTTGCATTGGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pif2	FBgn0046873	FBtr0081676	1	1	1	138	3R	2375283	2375301	CAAAGTGCAAGTGATCCAC		59	2375403	2375421	TATGATTGCCTTAGCTGGT		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Osi10	FBgn0037417	FBtr0078601	3	1	2	119	3R	2091004	2091024	GGCCAAGTAACAAACTATTGG		59	2091105	2092142	TCTCAGAGCCTAGACAGTC		59	NA	
Drosophila melanogaster	50	Rpn5	FBgn0028690	FBtr0078629	3	1	1	81	3R	1616690	1616709	CGAGATGTTCAAGGATAGCA		59	1616751	1616833	GCGAATGTTATGCTCTATCAG		58	NA	
Drosophila melanogaster	50	rev7	FBgn0037345	FBtr0078699	1	1	1	60	3R	1414895	1414916	AGTGTATCAGAAGGAGAATGAG		59	1414937	1414955	CCTCTGGGTTTCTAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34305	FBgn0085334	FBtr0112501	2	1	1	100	3R	68762	68844	CTTCATAATCCTGCTAGTCCT		58	68682	68700	GATCATCTTTGTAGCGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32454	FBgn0052454	FBtr0078529	1	1	1	60	3L	22723169	22723188	GGATGAAATTGATCTGCACC		59	22723208	22723229	CGCGTGCATATAAGAATTAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Exn	FBgn0027593	FBtr0075271,FBtr0075273,FBtr0075272	1	3	3	80	3L	16984290	16984310	GATGATTACGACTCCTTTGAG		58	16984351	16984432	GTCATTGTAGTTTCTTTGCC		57	NA	
Drosophila melanogaster	50	Taf4	FBgn0010280	FBtr0075450,FBtr0075449,FBtr0075451,FBtr0075448,FBtr0114589	2	5	5	190	3L	16112320	16112340	TGAGGTATTTCTCAATCTCCC		58	16112492	16112567	GTGGATCCAACTTGATGAC		58	NA	
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0112852,FBtr0112851,FBtr0075438,FBtr0075439	2	4	6	100	3L	16057085	16057333	GTCCCACTAATAATCAAGTTCC		58	16057394	16057412	ATCGTTCTCAAAGCTTTGC		59	NA	
Drosophila melanogaster	50	CG6084	FBgn0086254	FBtr0076139,FBtr0076138	3	2	2	93	3L	11614648	11614667	TACAATCACTGCCTACAGTC		59	11614514	11614592	TTCCTTGATCTTAGCCTCC		58	NA	
Drosophila melanogaster	50	CG6272	FBgn0036126	FBtr0076234	2	1	1	69	3L	11090964	11091109	AAACAATGAGGCTGTTCAG		58	11090913	11090931	GATGCGTTTCTTACGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6327	FBgn0036115	FBtr0076245,FBtr0076244,FBtr0076243,FBtr0076246	2	4	4	107	3L	11030799	11030817	GATTGCCCTCTACACTCTG		59	11030644	11030728	GATTGGGCCAACTTATCCT		59	NA	
Drosophila melanogaster	50	CG6640	FBgn0036068	FBtr0076312	1	1	2	229	3L	10091048	10091066	TTATCCACCACAAGGACAG		58	10090288	10090855	TAAAGATGAGACCAGCTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG6416	FBgn0035917	FBtr0089568,FBtr0089561,FBtr0089563	3	3	8	88	3L	8620819	8627689	ATTGTGAATCAGCCCTACC		59	8627741	8627759	CTCAAGTAGGACTCTGTCG		58	NA	
Drosophila melanogaster	50	CG6638	FBgn0035911	FBtr0076651	2	1	1	241	3L	8568815	8568890	ATAATTTCAAGGACATGCGC		59	8568491	8568509	CTTGGGAAGGTACTTCTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33276	FBgn0053276	FBtr0114530	1	1	1	123	3L	7633288	7633370	TGGACTATTGCTAATCTGCT		58	7633124	7633145	CCCAGTCTGTATCATTTATGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	msl-3	FBgn0002775	FBtr0076926,FBtr0076927	2	2	2	87	3L	7117435	7117511	GTTATGTCCACTGTCTGCA		59	7117366	7117385	TATACAGCAAGTGGTCATCC		59	NA	
Drosophila melanogaster	50	Cpr65Az	FBgn0035686	FBtr0076996	3	1	1	70	3L	6154287	6154364	CCGATGGTTCTTATATGTACGA		59	6154395	6154413	CTTCAAGTAGCCCATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Teh2	FBgn0035505	FBtr0073258	3	1	1	97	3L	4180800	4180818	TGCTCAGCTATTGGTACTG		59	4179578	4180740	CAGAAGTTTGTCTTCCTTGG		58	NA	
Drosophila melanogaster	50	CG13921	FBgn0035267	FBtr0072773,FBtr0072772	1	2	2	85	3L	1749644	1749725	AGTGGATAAGGAAGGAGTG		57	1749774	1749792	CTCTCAGGCAGGAATAGAG		58	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-1389b	FBgn0083045	FBtr0113526	1	1	1	60	2R	17221696	17221714	AATGAAGTGAGTGTTGCCA		59	17221737	17221756	CAACTATGTCTGAAAGCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pof	FBgn0035047	FBtr0072327,FBtr0072328	3	2	2	159	2R	20558154	20558174	ATAACTGCTCAGATTCCAGTG		59	20558292	20558374	GTATCTTCTAAGCTGTTCTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34214	FBgn0085243	FBtr0112407	1	1	1	68	2R	20553345	20553422	ATAAATCCTCTGTACCCGC		58	20553295	20553313	TTGGATAATCGATCCGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	G-salpha60A	FBgn0001123	FBtr0072144,FBtr0072143,FBtr0072142	2	3	3	81	2R	19833971	19833989	TGACGCAATAATGGAATCC		57	19834033	19834132	AGATATACGCAGAAACTCGT		58	NA	
Drosophila melanogaster	50	Tbp	FBgn0003687	FBtr0071679	3	1	1	184	2R	17574323	17574341	ACAATCCTAAGCGATTTGC		58	17574093	17574175	AAAGTCGAGGAACTTTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9865	FBgn0034649	FBtr0071680,FBtr0071681	2	2	2	60	2R	17556362	17556381	TTTGCTACGGACAATTACAC		58	17556321	17556342	TTGTAGTCTATATCGGTGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Xbp1	FBgn0021872	FBtr0071571,FBtr0071572	2	2	2	79	2R	17031639	17031722	AAAGAAGCTAAAGAACCGTG		58	17031764	17031782	TCTCGTAGTCCATCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL54	FBgn0034579	FBtr0071533	1	1	1	60	2R	16948710	16948788	AAATCAAACCGGATTCGGA		59	16948811	16948830	ACTATGCCTTCCGTATTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3216	FBgn0034568	FBtr0071551,FBtr0071552	2	2	2	80	2R	16878261	16878281	CCTTGGATGAGATTAACAAGG		58	16878136	16878219	AACAGGATGGATAGCTTCC		58	NA	
Drosophila melanogaster	50	Ate1	FBgn0025720	FBtr0086319,FBtr0086318,FBtr0086317	1	3	3	82	2R	16142845	16142922	CTCACCGATGTTATTCGTG		58	16142781	16142799	TCATTCACATCCCTAGCTG		58	NA	
Drosophila melanogaster	50	CG12963	FBgn0034031	FBtr0087337	3	1	4	91	2R	11444239	11444257	AGTTGAAGATCGACGAGTG		59	11444310	11449330	TACATTACGATCTTCCATGGC		59	NA	
Drosophila melanogaster	50	CG8155	FBgn0034009	FBtr0087391	2	1	1	94	2R	11207995	11208072	AGGAATTCGTACCCATTACTG		59	11207921	11207939	CAGATAGGAAGGACTGGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18324	FBgn0033905	FBtr0087523	1	1	2	80	2R	10057020	10057085	TCTACATGATAAAGGCCCA		57	10057129	10057147	TCATCGAAGTATGCTTGTG		57	NA	
Drosophila melanogaster	50	CG33752	FBgn0053752	FBtr0091753	2	1	1	83	2R	8433589	8433665	CCATGATATACTGGTAAAGGAC		57	8433708	8433727	CTAAACATGTAGTTTCCCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vis	FBgn0033748	FBtr0087944,FBtr0087945	1	2	2	81	2R	8396265	8396284	CTCTGGTTCTAAGGCATCTG		59	8396137	8396222	CAACTGTTGATTCACGTCAC		59	NA	Nonspecific
Drosophila melanogaster	50	Cpr49Ag	FBgn0033730	FBtr0087922	3	1	1	174	2R	8295376	8295394	AGTTAGTCTTCCTCGTCTG		58	8295532	8295631	TTCGATGTCTCATAGCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34228	FBgn0085257	FBtr0112421	3	1	1	108	2R	7539478	7539496	GTAACGCCGTTTACATCAC		59	7539567	7539654	TGTATGGATGGACTGTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr47Ee	FBgn0033602	FBtr0088114	1	1	1	105	2R	7153179	7153197	TCTCCTACGGATACTCGTC		59	7153266	7153629	GATCCCTGAATCACCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8728	FBgn0033235	FBtr0088882	3	1	1	120	2R	3825359	3825378	GCAAAGATACTTTGTGGAGG		58	3825205	3825279	GCATTGTTCCTTTACTAATCCG		59	NA	
Drosophila melanogaster	50	Tsp42Ei	FBgn0033130	FBtr0089028	3	1	1	114	2R	2923846	2923864	TCGTGAAGTATCTGGACGA		59	2923998	2924017	TTCTTTACGCTGCTGTAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7200	FBgn0032671	FBtr0081062	1	1	1	60	2L	18157849	18157921	CATGGACCTCCTATCATGC		59	18157807	18157825	CCCACTATATTGGTGGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31775	FBgn0028537	FBtr0080691	1	1	1	112	2L	14737636	14737721	TTGATCCTCTTCATTGCCC		59	14737542	14737560	AATCCACCTCCAAATCCTC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	loqs	FBgn0032515	FBtr0080498,FBtr0100220	3	2	3	104	2L	13384782	13384992	GCTTAAGTTACAGAAGACTTGC		59	13385057	13385075	ATGTCCACATAGGTCACCT		59	NA	
Drosophila melanogaster	50	CG17217	FBgn0032419	FBtr0080341	1	1	1	62	2L	12170846	12170864	AAAGTTCTGAGATGGTCGT		58	12170890	12170965	TTGTCCATACCATTTGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RfC38	FBgn0028700	FBtr0080225	1	1	1	60	2L	11130146	11130165	CTTTGGGTGGATAAATACCG		58	11129995	11130123	CTTGATCCTTGTGGAAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4995	FBgn0032219	FBtr0079989,FBtr0079991,FBtr0079990	1	3	3	60	2L	10324293	10324380	TCTAAGGGATATTCCAGGC		57	10324404	10324422	TTGACGCATAAGGTACTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	sop	FBgn0004867	FBtr0079905	3	1	1	60	2L	9896944	9896963	CAAGATCAAGTCTTTGGAGG		58	9896903	9896922	GATCTCGAACTCTTTGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13384	FBgn0032036	FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079658	1	4	6	230	2L	8385088	8386225	TACAGTCAGTATTCCCGAG		57	8386516	8386535	TTATAGGACTTATCCGTCGA		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Pvr	FBgn0032006	FBtr0079629,FBtr0079628,FBtr0079625,FBtr0079627,FBtr0079630,FBtr0079626	3	6	6	83	2L	8224649	8224667	ATGAAGGCGTCTACAAGTG		59	8224523	8224602	CGGGCAGATCTGATATCAC		59	NA	
Drosophila melanogaster	50	CG31630	FBgn0051630	FBtr0079400	3	1	1	63	2L	7046480	7046498	TCAAGAAGCTAGACTCCCT		59	7046525	7046543	AAGGTTTGCCCATAATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11015	FBgn0031830	FBtr0079288	1	1	1	199	2L	6558587	6558952	CATCTGCGAAGAGGATCAG		59	6559115	6559133	ATTTGGACAGCTAAGTGGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG3225	FBgn0031631	FBtr0077416	1	1	1	127	2L	4815850	4815929	CCTTAATGATAGGTGTGAAACG		59	4815744	4815762	ATGATGTTTCAGGGACGAG		59	NA	InUTR
Drosophila melanogaster	50	morgue	FBgn0027609	FBtr0077457	3	1	1	118	2L	4444547	4444565	CAGTTGCTAAAGGAACTGG		58	4444385	4444466	CAGCAGGTGTTACTATTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	syt	FBgn0004242	FBtr0077727,FBtr0077726,FBtr0077728	1	3	4	80	2L	2792532	2792550	AAGAAGTTCGAGACCAAGG		59	2792360	2792490	GTAGGGCAAACTCTTAAAGGT		59	NA	
Drosophila melanogaster	50	Gr22a	FBgn0045501	FBtr0077897	2	1	1	97	2L	1793970	1793988	TTTAGCTGAGAGTACTGGC		58	1793826	1793909	ATTCTGTTACTCTGCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14339	FBgn0031301	FBtr0077954	3	1	1	93	2L	1110412	1110487	GTAGACTTTGCGAATCTCTG		58	1110543	1110561	TATCGAAACCCTCGTTCTC		58	NA	
Drosophila melanogaster	50	tRNA:Y1:85Aa	FBgn0012024	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:I:49Fb	FBgn0011882	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG14408	FBgn0030581	FBtr0073991,FBtr0073990	1	2	4	107	X	14722054	14723176	TTCAGCAGATCTTCAGAGC		59	14721965	14721985	GAGTTCCTCCACTATAATGGC		59	NA	
Drosophila melanogaster	50	hop	FBgn0004864	FBtr0073457	3	1	1	197	X	11258687	11258705	TCATTCAAGCGGATAGTCC		59	11258448	11258529	ATATCGAATCTGGATACCACTG		59	NA	
Drosophila melanogaster	50	CG32686	FBgn0052686	FBtr0071468,FBtr0071467,FBtr0113446	2	3	3	60	X	10267352	10267370	GAATCAAAGAGCCCATCTG		58	10267310	10267328	TAACTCCAGTTGAGTCCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475	2	6	7	169	X	10173217	10217610	AAGGTCAAAGAGATGATGGA		58	10173067	10173085	AGTCCCATAATGTACAGGG		58	NA	
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297	1	4	6	117	X	9005031	9005126	GAGCATGGATTTAATCCAGC		59	9005449	9005467	GAATCTGTCGGATGAGGTC		59	NA	
Drosophila melanogaster	50	CG32727	FBgn0052727	FBtr0071056	1	1	1	60	X	7301630	7301649	AGTATTAGTCCTAACGCTCC		58	7301672	7301690	TTCGATCCGGATGTTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0045	FBgn0026702	FBtr0070782	2	1	1	60	X	5518675	5518694	GGATCATCGTTCTATGTGCT		59	5518714	5518735	GAATACTCTCGACAATCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yin	FBgn0015565	FBtr0070632,FBtr0070633,FBtr0070631	2	3	3	173	X	3759040	3759114	GATGCCAACTAAAGCTGTG		59	3758885	3758903	AAAGATCCTGCGTTAATGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	trol	FBgn0001402	FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964	1	4	7	80	X	2386428	2386446	TAGTAATGATCGCAGACCG		58	2384863	2386384	CCAACGTCGTTATTCTCCT		59	NA	
Drosophila melanogaster	50	CG41529	FBgn0085671	FBtr0114118,FBtr0114119	3	2	2	66	U	3832285	3832303	CAATTGGTTTGACCTGCTC		59	3832331	3832351	TAGCTTCTGGTTGAGATTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cals	FBgn0039928	FBtr0089208,FBtr0089207	1	2	2	83	4	1140617	1140635	TCGCCTAGACTTATGTGAC		58	1139633	1140570	ATGTGCTTTGTCTTAAGGG		57	NA	
Drosophila melanogaster	50	CG15817	FBgn0028476	FBtr0085395,FBtr0085396	2	2	2	81	3R	25057749	25057767	TAATTGCATCAGGGAAACG		58	25057812	25057896	GGCTATGTATCCATTTGCG		58	NA	
Drosophila melanogaster	50	Lnk	FBgn0028717	FBtr0084937,FBtr0084935,FBtr0084936	1	3	3	108	3R	21717660	21717678	TGGCTACGATAATGGTCAG		58	21717750	21718182	CACTTCGTTGCAATGTCTC		59	NA	
Drosophila melanogaster	50	Caki	FBgn0013759	FBtr0112872,FBtr0112873,FBtr0084162	3	3	5	83	3R	17617276	17617297	TTCAAGATAGTTCCTTCGTACC		59	17615474	17616440	CACGAATATAAGCACCGGA		59	NA	
Drosophila melanogaster	50	PP2AB	FBgn0042693	FBtr0083553,FBtr0083552	2	2	5	81	3R	13995748	13995766	TGTAGAAGGAGTAGCTCCA		58	13995811	13997259	TTTGTTAGCCAAACTGCTC		58	NA	
Drosophila melanogaster	50	Hsc70-4	FBgn0001219	FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056	2	6	6	71	3R	11071531	11071549	GGTATCCTCAACGTGACTG		59	11071584	11071602	CTTGTCGTTGGTAATGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CheA87a	FBgn0038142	FBtr0082749	2	1	1	60	3R	9195749	9195769	GCTTTGCGACTTTATGAAGAG		59	9195790	9195809	GTATTCCTTGATCCGTTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34108	FBgn0083944	FBtr0110788	1	1	1	60	3R	6051651	6051669	AGAAGAAAGGACAACTGGC		59	6051693	6051711	TCTAGGGAGGATCGATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trl	FBgn0013263	FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704	3	8	9	237	3L	14747639	14750011	TGCTAAAGAATACACCATGC		58	14747421	14747439	TGTTGTGGAATCATGTGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5288	FBgn0035950	FBtr0076553,FBtr0076555,FBtr0076554	3	3	3	81	3L	8977960	8977980	CAGCTTCAACTCAGAAATCTC		58	8977754	8977917	TTGGAAGCTCGATTCTGAG		59	NA	
Drosophila melanogaster	50	Lcp65Ac	FBgn0020642	FBtr0076991	3	1	1	120	3L	6138330	6138348	TACACGGTCAACTACATCG		59	6138430	6138450	TATACATAGAACAGCTCTCGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Srp54k	FBgn0010747	FBtr0077169	2	1	1	60	3L	5147367	5147385	TGACCAAGAATGTGAATCC		57	5147409	5147427	ATCATCTTCGCTATCTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr64d	FBgn0035486	FBtr0073197,FBtr0073198	3	2	2	120	3L	4033402	4033470	CTCATCTTTGCAATGGCTG		59	4033554	4033572	AAATGCTCATGGAGGAACC		59	NA	Nonspecific
Drosophila melanogaster	50	Awh	FBgn0013751	FBtr0073156	1	1	2	81	3L	3860693	3860712	CATTTCAGAATAACGCACAG		57	3860754	3860903	TCCATAGAGGATTCATGAGTC		58	NA	
Drosophila melanogaster	50	CG12020	FBgn0035273	FBtr0072778	3	1	1	61	3L	1798156	1798175	CTTCACGTTCTTCATTTGCA		59	1798199	1798217	CTACGTCCGTAATGACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3511	FBgn0035027	FBtr0072309	3	1	1	97	2R	20460294	20460312	TGGCATTCTCGAATACTGG		59	20460373	20460449	ACTCAAAGAGGCTTGTGTC		59	NA	
Drosophila melanogaster	50	CG15873	FBgn0035003	FBtr0072357	2	1	1	77	2R	20317560	20317580	CTATGGCGATACATGTATCAC		58	20317450	20317468	AGGTAGACCAGTTCATTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	LBR	FBgn0034657	FBtr0071713,FBtr0071711,FBtr0071712	3	3	3	60	2R	17610551	17610571	GTAAATTATGATCCTGCCACC		58	17610593	17610611	CGTCCAATACGTAGAACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11200	FBgn0034500	FBtr0086300,FBtr0086299	2	2	2	71	2R	16193964	16193982	ATCAGTACCTGGGAATCGT		59	16193848	16193930	TATAAAGTGCCACTCGATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33454	FBgn0053454	FBtr0086565	3	1	1	98	2R	15138745	15138763	AACATCAACCATTCTTGCC		58	15138604	15138625	GCGTGATAAATAATCTCCAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	RhoGAP54D	FBgn0034249	FBtr0086900	2	1	2	128	2R	13475138	13475156	TACAGAGCAGCGTATATCG		58	13474895	13475046	TGATAGATTCCTGCATCGC		59	NA	
Drosophila melanogaster	50	SRPK	FBgn0026370	FBtr0087385,FBtr0087384,FBtr0087383	1	3	3	256	2R	11271644	11271662	CTCTGTGGAGGATAACGTG		59	11272078	11272096	TAGCCTGTTGACTCTTGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	kn	FBgn0001319	FBtr0112809,FBtr0087465,FBtr0112810	2	3	3	119	2R	10662970	10663056	TTCGTCTATGTCTCAGCTC		58	10662869	10662890	CTTGAGGATTATCTCTTTCTGG		57	NA	
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930	2	5	6	106	2R	8335509	8335527	ATCATAACCTCAACAAGCG		57	8335596	8335677	CGAGTTATCACTTGTGTACG		58	NA	
Drosophila melanogaster	50	CG8831	FBgn0033737	FBtr0087952	3	1	1	60	2R	8317040	8317058	TTCTGCAGAGAACTCTCAG		58	8316942	8316960	TGTGAAGCGTTTGAATCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9027	FBgn0033631	FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897	2	4	4	189	2R	7269618	7269637	GGATAATACCCAGGTCAAGG		59	7269385	7269466	ACCGTGATCAACCTTATCG		59	NA	
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	2	12	12	89	2R	6499951	6500254	GGCATATGGACATGTATAACTC		58	6500304	6500322	TATAGTGCGGTTCCTTCTG		58	NA	
Drosophila melanogaster	50	CG12159	FBgn0033232	FBtr0088889	2	1	2	166	2R	3803412	3803430	TGCTGCTTATTATGAGGGT		58	3802673	3802903	TTAAACCTGAACCAACTCG		57	NA	
Drosophila melanogaster	50	CR31808	FBgn0062978	FBtr0080943	2	1	1	60	2L	16705548	16705566	ATGCGTCTATTCCGATTCG		59	16705506	16705527	TTATGGACTAACTCCGTTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9253	FBgn0032919	FBtr0081468	1	1	1	286	2L	21143661	21143679	AGGATGTAATTGGCCTAGC		59	21144118	21144136	TAGATGATCAACCAAGCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	fbp	FBgn0032820	FBtr0081321,FBtr0081322	3	2	2	138	2L	19762596	19762614	GGAGGTCAAGAAACTGGAC		59	19762294	19762496	GATGTATTTGCCCTGTTTCTC		59	NA	
Drosophila melanogaster	50	Ddc	FBgn0000422	FBtr0081168,FBtr0081167,FBtr0081166	3	3	3	69	2L	19117496	19117514	GTTTGATTCCCTTCTACGC		58	19117445	19117463	TCATCCAAGTAGTCGAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Socs36E	FBgn0041184	FBtr0081041,FBtr0081040	2	2	2	281	2L	18141991	18142010	TAAGTACGTTACAACTGCAC		57	18141236	18141747	TATTGCTTCTGGAAACTGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG12455	FBgn0028859	FBtr0080823	1	1	2	80	2L	16239067	16239089	GGAAGTATTTAGTAGGTCGACTC		59	16239128	16239213	TGTATTCCATAAATGGCGCT		59	NA	
Drosophila melanogaster	50	abo	FBgn0000018	FBtr0080168	2	1	1	60	2L	10974629	10974648	TCGTATGTGTTCTTTCTGGT		58	10974588	10974607	GCAGGATAAGTCTATCTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9520	FBgn0032078	FBtr0079790,FBtr0079788,FBtr0079789	1	3	3	128	2L	8945116	8945369	TACTCAATGAAGGTCGCTC		59	8945006	8945026	CATCGTATGGCATGAATTCAC		59	NA	
Drosophila melanogaster	50	CG12560	FBgn0031974	FBtr0079548	2	1	1	96	2L	8008748	8008766	ATTTGGGTGCTTATGACGA		59	8008605	8008623	TTATGTGACTCCAGAACCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	Rapgap1	FBgn0085403	FBtr0112605,FBtr0112603	1	2	4	149	2L	7501515	7536282	TTTCTCAGAACCACCATCG		59	7501384	7501402	TCGAGTGATTCATCGAGTG		59	NA	
Drosophila melanogaster	50	CG2950	FBgn0031637	FBtr0077411,FBtr0077409,FBtr0077410	1	3	3	86	2L	4845308	4845326	AAACCGACCAAGATTCCTG		59	4845145	4845259	CTTGATGCCCATTACTTTGC		59	NA	
Drosophila melanogaster	50	BG642163	FBgn0083938	FBtr0110769	1	1	1	60	2L	4642388	4642409	GAATCTTCAAATCCTCTTGTCC		59	4642430	4642448	ATGGACTCAAACTTGGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Thor	FBgn0022073	FBtr0077524	2	1	1	158	2L	3479212	3479230	TCATGAAGAATCTCCGTGG		59	3479352	3479370	CCTGGTCCTCAATCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7280	FBgn0030966	FBtr0074655	1	1	1	76	X	18741340	18741421	GTAAAGGGTCTTTCATGGG		57	18741282	18741300	CTTAGAATGTCGCACAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1468	FBgn0030157	FBtr0071388	1	1	1	72	X	9772671	9772692	CGATGATGACGAATTAAACTGG		59	9772725	9772866	CACTACATCTCCACACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sep2	FBgn0014029	FBtr0083945	2	1	1	61	3R	16413884	16413902	ACCAACTGGTCAACAAGAG		59	16413175	16413859	TTCGCCTATACACATGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6218	FBgn0038321	FBtr0083119	3	1	1	118	3R	11165164	11165182	CCTTATTTCAGGAACCGGA		58	11164872	11165082	GATACGAGATGTACCAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rrp6	FBgn0038269	FBtr0113235	1	1	1	256	3R	10711465	10711557	CAAAGGGTTCAAGAATGCA		58	10711115	10711133	GATTAGTCGTAATGCGCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32055	FBgn0052055	FBtr0076304	3	1	1	63	3L	10212577	10212651	ACTTTCAATGGTGTCACCT		59	10212532	10212550	CAATTGCTGTGAAGATGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33523	FBgn0053523	FBtr0091478,FBtr0091477,FBtr0091475	2	3	4	94	3L	5921732	5921813	ACGTACAAGATCCAAACCA		58	5921871	5921889	CATATGTTGATGGTGGCCT		59	NA	
Drosophila melanogaster	50	CG10853	FBgn0035478	FBtr0073164	3	1	1	60	3L	3947945	3947964	AGTTATATCCCTAGCTGTGC		58	3947987	3948062	CCAGGGATTATTGTGACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3825	FBgn0034948	FBtr0072204	2	1	1	161	2R	19863606	19863684	CTCCTGTCAAGAAGGTTCG		59	19863463	19863483	CATTGAGAATGGGTGAAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PIP5K59B	FBgn0034789	FBtr0071901,FBtr0110862,FBtr0071900	3	3	3	102	2R	18763722	18763742	TCTATATTCTACCTGACGACC		57	18763803	18763886	GATTCATATAGTAACCAGGCAG		58	NA	
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494	2	7	7	152	2R	15418202	15419689	CTATTGAGGGTAAAGGCAC		57	15418068	15418087	CTCAATTGTAGATGTCCACC		57	NA	
Drosophila melanogaster	50	CG6280	FBgn0033866	FBtr0087628	1	1	1	233	2R	9643071	9643144	GAGCTTAATAAGCAGCCAG		58	9643461	9643480	GAACTGGATGTAACCATGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr49Ah	FBgn0033731	FBtr0087924	1	1	1	163	2R	8301578	8301816	CATACTTCTTGTGCTGTTGG		59	8301939	8301960	CCTTGTTGTACTTGATTATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33558	FBgn0053558	FBtr0086193,FBtr0113470	2	2	2	94	2R	2821425	2821581	TATCACGAAAGAGCTGTCC		59	2821349	2821367	ACATGTTCACATAGGTGGG		59	NA	
Drosophila melanogaster	50	Pi3K21B	FBgn0020622	FBtr0078132	3	1	1	154	2L	299901	302027	CAAGGACAAGTACATTGAGC		58	302144	302162	CATCCTTTAGCAACCAGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	tRNA:CR32363	FBgn0052363	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG15126	FBgn0040729	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG17159	FBgn0039945	FBtr0113720,FBtr0113717,FBtr0113718,FBtr0113721,FBtr0113719	1	5	5	60	XHet	67548	67566	TACTCACTTAAATCGCCCA		58	66298	66316	TTATAGACGTTTGATGCGG		57	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	swaPsi	FBgn0016974	FBtr0070923	2	1	1	120	X	6256152	6256170	TCCTTAGACTTAAGCAGCG		59	6255997	6256015	CTGGAGGAGATTGAATGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41107	FBgn0069937	FBtr0111238	1	1	1	89	X	22274923	22274941	ATCTTTCTTGTGCGAATGC		59	22274852	22274870	ATGACCAAGGTATCAGGGA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	DIP1	FBgn0024807	FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370	2	4	4	170	X	21497272	21497350	TTCTTTGCATTATGCGTCC		58	21497120	21497138	GAGAGTTGCACACTTTCAC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG33713	FBgn0064116	FBtr0077227,FBtr0091702	1	2	2	60	X	21189427	21189446	AGGAGAACAATCTAGACAGG		58	21189386	21189404	TCCAGCTTAACCAAGTCAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1812	FBgn0031119	FBtr0077313,FBtr0077312	2	2	2	183	X	20385202	20385384	AAGCTTTACATCTCTGGTGG		59	20385530	20385548	ATTCCGTCAAACTCTCGTG		59	NA	
Drosophila melanogaster	50	RhoGAP19D	FBgn0031118	FBtr0077320	2	1	1	102	X	20346681	20346701	CACGGAGATCCTATTCAAGAC		59	20346537	20346618	CTGGTGCTCATTATCATCGT		59	NA	
Drosophila melanogaster	50	Sdic2	FBgn0053497	FBtr0089610	2	1	1	67	X	20080202	20080220	TGGTCTACACAAAGCAGAC		59	20078245	20080171	ATCAAATGCAAGCACATCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Tyler	FBgn0031038	FBtr0074735,FBtr0074736	3	2	2	84	X	19506171	19506189	ATATCTGTGTCCCGAAACC		59	19506325	19506343	CACACGATCTTGACAAAGG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Pfrx	FBgn0027621	FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720	2	8	8	60	X	19402025	19402043	CGTTAAACGAGATCGATGC		59	19402067	19402085	TTCTCCTTGATTTGCTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7349	FBgn0030975	FBtr0074648	2	1	1	116	X	18789854	18789872	ATCATACTGGTGGAACAGC		59	18790008	18790026	TCCTTGAGAAAGTCCAGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	GalNAc-T2	FBgn0030930	FBtr0074624,FBtr0074625	1	2	2	173	X	18392114	18392132	GATCATCCTGGTGGATGAC		59	18391517	18391535	AAGAAGACGATCACCTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7536	FBgn0030890	FBtr0074530,FBtr0074531	2	2	2	103	X	17974381	17974457	TTCACAGTCCGAACTATGC		59	17974296	17974315	TTTGATATCCCACGTGTAGG		59	NA	
Drosophila melanogaster	50	CG5703	FBgn0030853	FBtr0074452	3	1	1	92	X	17527063	17527081	GAAGTTCACCATCTCGGAG		59	17527133	17527309	GATGTCAGATCCTCATAGTAGTC		59	NA	
Drosophila melanogaster	50	CG12998	FBgn0030829	FBtr0074394	3	1	1	191	X	17113161	17113180	GTCATAAAGATCGGAGGAGG		59	17113334	17113352	CCACCATCCACTATTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	xmas-1	FBgn0016080	FBtr0074405	1	1	1	256	X	17047319	17047337	TCACAGAAGATATCGCAGC		59	17046902	17046920	TATTGCTGTTGGTCACCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34015	FBgn0054015	FBtr0100070	3	1	1	62	X	16341818	16341836	TGATCTTTAGACCCTCCGT		59	16341701	16341720	TTTGGGAAAGGTAAATACGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	3	7	7	85	X	16270054	16270134	GAGAACGAGGTGAAATGGA		59	16270183	16270201	CTGTAGGTGGGTAAGTCCT		59	NA	
Drosophila melanogaster	50	CG9911	FBgn0030734	FBtr0074243,FBtr0074241,FBtr0074242,FBtr0074244	3	4	4	81	X	16188807	16188825	AAATCTGAAGGAAGACTGC		57	16188674	16188763	TATGATAGGTGTACCTGGTG		57	NA	
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211	2	5	5	112	X	16178691	16178711	CTCTATGTCCAGGTCAATCAG		59	16178784	16179063	AATGCATAGCCTACGTAGTC		59	NA	
Drosophila melanogaster	50	mmd	FBgn0041109	FBtr0074156,FBtr0074155	3	2	2	95	X	15856479	15856581	AATTTGAATGCAAGGCGAC		59	15856402	15856420	TTAGATTATCACCGCACGG		59	NA	
Drosophila melanogaster	50	CG8924	FBgn0030710	FBtr0074131,FBtr0074130	3	2	2	68	X	15837294	15837312	GAATGTCCACCTATCCCTG		59	15837402	15837421	GAATCCAAGTATTGCTGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Myb	FBgn0002914	FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169	1	4	5	82	X	15749875	15749893	GGTCTATAATCGCGTTGGA		59	15749747	15749829	GTCCAAGTTGACTCTTGTG		58	NA	
Drosophila melanogaster	50	CG8105	FBgn0030661	FBtr0074048	1	1	1	60	X	15482555	15482573	GATCCCTGAAAGAGCTGAG		59	15482597	15482615	CTGAAGATACCCAGCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14408	FBgn0030581	FBtr0100150,FBtr0073990	2	2	4	239	X	14725646	14725664	CATCAACCGATACGAAGTG		58	14725332	14725350	AGGTAGACCATCTCCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	na	FBgn0002917	FBtr0112815	1	1	1	80	X	14168770	14168789	AGCCTGATATACTTCTGCAC		59	14168830	14169182	GTTCTCCATGATAATAGCCAC		58	NA	
Drosophila melanogaster	50	l(1)dd4	FBgn0001612	FBtr0073841	2	1	1	110	X	13636000	13636089	AACATGAAGAACGAACTGG		57	13635908	13635926	ATCAGGATCATCGTACTGG		58	NA	
Drosophila melanogaster	50	CG15754	FBgn0030492	FBtr0073782	1	1	1	111	X	13422922	13422940	GTTGAGGGCTTCTATGTCC		59	13423015	13423103	TCAGAAACTCAACTGGACG		59	NA	
Drosophila melanogaster	50	Smr	FBgn0024308	FBtr0073707,FBtr0073706,FBtr0073708	1	3	3	84	X	12604887	12604906	ATTATCTTGGACAGAAGCTG		57	12604744	12604840	TTGGATTCACTAACATCCG		57	NA	
Drosophila melanogaster	50	tomosyn	FBgn0030412	FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678	1	4	4	80	X	12546142	12546277	ACTATCACGATGAAAGATGG		57	12546317	12546338	TAGACTAGGAAGACTATGTACC		57	NA	
Drosophila melanogaster	50	CG15728	FBgn0030409	FBtr0073674	1	1	1	124	X	12521534	12521555	CGGTTTGATGGTTTATCTACTC		58	12521640	12521722	ATACCTGGTGGATATGGCT		59	NA	
Drosophila melanogaster	50	LIMK1	FBgn0041203	FBtr0073661,FBtr0073659,FBtr0073660	1	3	3	129	X	12482054	12482073	CCGAGATGATGAAAGGTCTC		59	12481875	12481893	AGACTGAAGTCCGAATTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp311a1	FBgn0030367	FBtr0073640	2	1	2	152	X	11924996	11925014	CTTTCAGCCTCAATTGCTG		59	11924785	11924880	ATTGAGGTGTCCACAATCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	RpII215	FBgn0003277	FBtr0073542	1	1	1	80	X	11461122	11461143	CTGAGTACAACAATCTAAAGGC		59	11460999	11461081	CACAAGCAATAACCTGGGA		59	NA	
Drosophila melanogaster	50	Spase25	FBgn0030306	FBtr0073506	2	1	1	105	X	11380044	11380062	ATCGATCAGAATGGCATCG		59	11380131	11380149	TAGAAGAAAGGCTGCTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1986	FBgn0030162	FBtr0071395	3	1	1	138	X	9804619	9804637	TTTCAATCTGCAGCTTGGA		59	9804441	9804518	GAATAGGGTCCAAGTTAGCA		59	NA	
Drosophila melanogaster	50	Ser7	FBgn0019929	FBtr0071387	2	1	1	76	X	9759604	9759622	CAAACAACAGTGCTTCTCC		59	9760024	9760044	CCAATGGCGGTATAATATTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Aats-lys	FBgn0027084	FBtr0071367,FBtr0071366	3	2	2	73	X	9501701	9501721	CGCTATCTTGATCTCATTCTC		58	9501587	9501666	ACGTACGAGATGATCTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG33224	FBgn0053224	FBtr0089844	1	1	1	60	X	8943674	8943692	CGAGACTCAAACAGATTGG		58	8943713	8943734	GTCAGGGTTCTTACTATACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11265	FBgn0030049	FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964	3	4	4	142	X	8459066	8459084	ATGATATCGGTCGAAGCAG		59	8459189	8459420	AATGATTCGACCCAGTATCG		59	NA	
Drosophila melanogaster	50	Cp7Fa	FBgn0014464	FBtr0100003,FBtr0114578	3	2	2	133	X	8366869	8366887	CTACAAGGATTCCAGCGAG		59	8366984	8367002	TTCAGTAGTAACCGTCGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2260	FBgn0030000	FBtr0071194	1	1	1	60	X	8013694	8013712	CTTCCAATCGCTATTGGTG		58	8013652	8013670	ATTGTCTTCCATAGCATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CHES-1-like	FBgn0029504	FBtr0071079,FBtr0112946	1	2	2	80	X	7581776	7581865	CGCCATATAGCTTTAGTTCCT		59	7581716	7581736	CATAGATCTCTTTAACGGGCA		59	NA	
Drosophila melanogaster	50	CG3168	FBgn0029896	FBtr0070986,FBtr0070985,FBtr0070984	2	3	3	90	X	6617449	6617467	CCTTCTCGCAGACATACTC		59	6616690	6616708	AAGTACGACCAGATCACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4165	FBgn0029763	FBtr0070774,FBtr0070772,FBtr0070773,FBtr0070775	2	4	4	80	X	5317037	5317157	TAGAACACTACCAGACACCT		59	5317200	5317218	ACTCATAGCACCAGATGTC		58	NA	
Drosophila melanogaster	50	XRCC1	FBgn0026751	FBtr0070763	2	1	1	121	X	5225638	5225719	ATGTACCCATCTGATATGCG		59	5225803	5225821	ATGGCAGGTACTTCTTCAG		58	NA	
Drosophila melanogaster	50	SIP3	FBgn0061196	FBtr0070727	3	1	1	60	X	4854117	4854135	GAGCTAACCGAGCTAACTG		59	4854075	4854094	TTGGATTATTGCTCCTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6986	FBgn0029723	FBtr0100551,FBtr0100552,FBtr0070714,FBtr0070713	3	4	4	92	X	4619144	4619162	TCCAGCACTATGACTATCC		57	4619218	4620277	AGATGTAACCGAAACTGTC		57	NA	
Drosophila melanogaster	50	Mnt	FBgn0023215	FBtr0070579,FBtr0070578	2	2	3	81	X	3593450	3593470	CTAAAGCAACTGAGCTTAAGG		58	3593513	3593728	CCAGACAAACTGCTTTGTC		59	NA	
Drosophila melanogaster	50	dwg	FBgn0000520	FBtr0070487	3	1	1	135	X	2622874	2622893	TCAGATGATTGTGATACCCG		59	2623053	2623071	CAGGAAGTCCTCATCTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	mit(1)15	FBgn0004643	FBtr0100272,FBtr0070441	3	2	2	61	X	2499493	2499511	CCTAGGGCAGTTTGTAGAG		59	2499536	2499554	GAACTCGACGATACATCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14052	FBgn0029606	FBtr0070394	1	1	1	60	X	2118416	2118434	GAAGAAGGTGATCCACGAG		59	2118458	2118476	AATGTGTTCCTTGGTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	arm	FBgn0000117	FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988	1	4	5	92	X	1787500	1787518	AGAAGAAGCATATGAGGGC		59	1786143	1787447	GTATCATATCCTTGCTGATGGA		59	NA	
Drosophila melanogaster	50	CG14770	FBgn0029573	FBtr0070213	1	1	1	61	X	1263399	1263655	AAGTTGGCTATTACCTGCC		59	1263680	1263698	TAGTCGTGGATCTTCAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DAAM	FBgn0025641	FBtr0070241,FBtr0070240,FBtr0070239	3	3	3	82	X	1187405	1187424	TTCTCATGCTCGGTATACAG		58	1187282	1187360	AAAGAAGTCCAAATGCCTG		58	NA	
Drosophila melanogaster	50	CG11380	FBgn0040359	FBtr0070201	2	1	1	131	X	1088507	1088525	ATTAAGGAGCTGGACAAGC		59	1088620	1088706	GTAGCCGTATCCCAAATCC		59	NA	
Drosophila melanogaster	50	CG3777	FBgn0024989	FBtr0070066,FBtr0070068,FBtr0070067	1	3	3	98	X	241723	242116	CAAACAAGACTGGTAGAAATCG		59	242175	242193	CTACTGATGTGGCATCTGG		59	NA	
Drosophila melanogaster	50	CR42195	FBgn0085828	FBtr0114286	3	1	1	145	U	4085953	4085971	GAATATTCTGTGCATGGGA		57	4085826	4085844	TTAGTCTTAAGACGGTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40189	FBgn0058189	FBtr0113823	1	1	1	120	U	40283	40301	ACAAAGGAAGGTTGATCGA		58	40993	41728	ATGATATCTTTCGAGTGCGA		58	NA	
Drosophila melanogaster	50	RfaBp	FBgn0016724	FBtr0089188	2	1	1	165	4	1093857	1093875	AATCTCGTCAAGTTACGGA		58	1094004	1094079	TTAAATAGGGTGCGTATGC		57	NA	
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	2	8	8	80	4	671647	672939	ACAGCACAGATTGATGGTC		59	671585	671604	GTTCAAATACGGGTGAAAGC		59	NA	
Drosophila melanogaster	50	Pur-alpha	FBgn0022361	FBtr0089994,FBtr0089996	2	2	4	146	4	585280	586045	TGATGGAGGGTTTAAAGGA		57	586240	586258	ATAGTTATCGAAGTCCGGA		57	NA	
Drosophila melanogaster	50	CG32850	FBgn0052850	FBtr0089123	2	1	1	89	4	337128	340085	TGTATCATCAGGGAGAGCA		59	340135	340156	GTTGACGATTGTTAGAAGATGG		59	NA	
Drosophila melanogaster	50	mod	FBgn0002780	FBtr0085874	2	1	1	82	3R	27880066	27880150	GAACTTGACTTCAGATGCT		57	27880195	27880214	CCAACATTATGATGCTTTCG		57	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	3	14	14	110	3R	27690344	27690864	TAAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	CstF-50	FBgn0039867	FBtr0085866,FBtr0085865	3	2	2	62	3R	27561809	27561827	CTTGCGTGAAATATTCGCC		59	27561765	27561784	TGATGTCACCATCATAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ctr1C	FBgn0062411	FBtr0085750,FBtr0085749	1	2	2	60	3R	26789596	26789616	GGAAGGGATCAGTATAATCGG		59	26789556	26789576	GCTGGTTGTAATTGTAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31013	FBgn0051013	FBtr0085671	3	1	1	87	3R	26470934	26471014	CAGTACAATGACAGCATGAG		58	26470866	26470885	ATTGAATAGCATCCGATGGT		59	NA	
Drosophila melanogaster	50	tmod	FBgn0082582	FBtr0085658,FBtr0113483,FBtr0085660	1	3	7	81	3R	26359219	26397538	AGATCACTGAGACTTCTGC		58	26397583	26397601	TACTCACTCAGATCCTTGC		58	NA	
Drosophila melanogaster	50	spn-A	FBgn0003479	FBtr0085589,FBtr0085590	3	2	2	63	3R	25880957	25880975	CTTTGAGTCCAGATACGCT		59	25880912	25880931	ATAATCGGATCTGTAGAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7903	FBgn0039730	FBtr0085608	2	1	1	211	3R	25820053	25820072	AATAGTGACTTTCAGGGAGG		58	25819802	25819880	GGATTTCCTCCATTAGTCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7816	FBgn0039714	FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921	3	6	6	81	3R	25690544	25690624	GGGCGATAATCAAGATCCT		58	25690481	25690500	GATCGTGAAGATCAGTATGC		58	NA	
Drosophila melanogaster	50	CG11881	FBgn0039638	FBtr0085414	3	1	1	118	3R	24954760	24954778	TTAATCTTAGCACCTCGCC		59	24954594	24954681	CAGTGAGTCATTGATTGTTCTG		59	NA	
Drosophila melanogaster	50	Dhc98D	FBgn0013813	FBtr0085291	3	1	1	81	3R	24321143	24321164	GGATCTGGTCATAAACATACAC		58	24321206	24321293	GTACTTTCGGAATTGCGAC		59	NA	
Drosophila melanogaster	50	CG12877	FBgn0039544	FBtr0100446,FBtr0085223,FBtr0085222	1	3	3	82	3R	23536240	23536258	CGGATTATACAGGAGAGCG		59	23536379	23536399	CGCAGATAATACTTGATGAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	RpS10a	FBgn0027494	FBtr0085194	3	1	1	103	3R	23478837	23478855	CAAACTACTCGATCGAACG		58	23478921	23478940	CTGTAGTTCGATCTGTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6073	FBgn0039417	FBtr0085003	2	1	1	120	3R	22013581	22013599	TGATCCTAAACGAGCAGAG		58	22013423	22013497	CTTTCAGGTAGGTACTGCA		58	NA	
Drosophila melanogaster	50	CG33494	FBgn0053494	FBtr0089607	1	1	1	117	3R	21320015	21320033	ATCCTCTTATGGTCGACAG		58	21319780	21319799	TGTCTGAGTTTCTTATCGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11836	FBgn0039272	FBtr0113284,FBtr0084767,FBtr0084768	2	3	3	139	3R	20897387	20897467	ACTGTGACTGTGATTGTGG		59	20897569	20897588	CTTCGTCAGTAAGGATCCTC		59	NA	InUTR
Drosophila melanogaster	50	CG11781	FBgn0039259	FBtr0084797	3	1	1	62	3R	20850319	20850337	CTGACCAATCAGTTCATGG		58	20850275	20850293	GCCATAGAGGAATGTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11120	FBgn0039250	FBtr0084717,FBtr0084716	1	2	2	128	3R	20749907	20749925	AAGACATTGATAAGCGCTG		58	20750067	20750148	GTATAACACCTCTATTGGGCT		58	NA	
Drosophila melanogaster	50	Mpk2	FBgn0015765	FBtr0084580	3	1	2	92	3R	19977622	19977643	GGAGTAATAGCGCAAATATAGG		58	19977451	19977570	ACCTTAGTTAATGGTGCCTC		59	NA	InUTR
Drosophila melanogaster	50	CG10217	FBgn0039113	FBtr0084464,FBtr0084465	2	2	2	157	3R	19587469	19587487	TAGTACAGTCTGCTCTTGG		57	19587272	19587349	CACCAAGAATTCTCGTTCTG		58	NA	
Drosophila melanogaster	50	Rpn9	FBgn0028691	FBtr0084469,FBtr0084470	3	2	2	120	3R	19557825	19557843	TTCTTGAGTCGCTTAAGGG		59	19557662	19557680	AAATCGGGAATCTTGGACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10251	FBgn0043005	FBtr0113347	1	1	1	80	3R	19522995	19523014	TGCCTACAAATATGGTCAGG		59	19522868	19522954	GCACTGGGTATCAGAATAGAG		59	NA	
Drosophila melanogaster	50	lmd	FBgn0039039	FBtr0084364,FBtr0084363	2	2	2	85	3R	18849540	18849558	GCCAGTATAAAGGTTGCCT		59	18848193	18849493	ATACGGTTTCGTATCGTAGTG		59	NA	
Drosophila melanogaster	50	CG6353	FBgn0038893	FBtr0084116	3	1	1	161	3R	17487932	17488449	GGATGTTCAAATCCACGGA		59	17487789	17487809	AAGTGAAAGAGTAAGCTCTCC		59	NA	
Drosophila melanogaster	50	Obp93a	FBgn0038859	FBtr0084030,FBtr0084031	1	2	2	81	3R	16954926	16954944	AATAGTTGCACGGACTACG		59	16954809	16954827	CAGGATAGAAGTCGCAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Atpalpha	FBgn0002921	FBtr0089514,FBtr0089516	2	2	8	97	3R	16794124	16794144	TTTCCTTAGCTTATGAGACGG		59	16794202	16798907	CATCGAAATCAACCTTTCGT		58	NA	
Drosophila melanogaster	50	CG5621	FBgn0038840	FBtr0110956	2	1	2	105	3R	16733261	16733281	GTCTACCTTGTCATGTTTGTG		59	16733348	16733664	TGAAGCTCACCTTGTTCTC		59	NA	
Drosophila melanogaster	50	GluClalpha	FBgn0024963	FBtr0100128,FBtr0083788,FBtr0100127	1	3	4	97	3R	15593276	15593294	GTTATATCGCGGATCACCT		59	15593354	15600648	TAGAAGGTCTCATCCTCCTC		59	NA	
Drosophila melanogaster	50	CG31219	FBgn0051219	FBtr0113400,FBtr0083783	1	2	2	60	3R	15477721	15477739	CAAACTTGAAATAGCCGGA		58	15477760	15477781	CATCAGTACTTGGCTAAATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dys	FBgn0024242	FBtr0110918,FBtr0110917,FBtr0083764,FBtr0110919	1	4	8	80	3R	15310655	15310768	GATAGTGATACGAGTCGCA		58	15310812	15310830	AGACAATGATTCCAGGACC		58	NA	
Drosophila melanogaster	50	endoA	FBgn0038659	FBtr0083699,FBtr0083698	1	2	2	60	3R	14733033	14733053	GTATATGACGGAGAAGATGGG		59	14733075	14733093	CTCCATGAAGTCCATGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tinc	FBgn0038554	FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769	3	4	4	114	3R	13691908	13692611	CTTCCTAGCAGCTCTTGTC		59	13692689	13692707	GTAAGTGCTGTCCAATGGA		59	NA	
Drosophila melanogaster	50	pxt	FBgn0038538	FBtr0083507,FBtr0083508	1	2	2	92	3R	13547547	13547626	CCATTCCAGTGTTGATGGT		59	13547679	13547700	GAAGGATTGAACATCACATCTG		59	NA	
Drosophila melanogaster	50	Fas1	FBgn0000634	FBtr0083334	2	1	4	91	3R	12460104	12461279	GTTTATGAACGAGAATGCTGAG		59	12461329	12461349	TATTGATGTCGTCCAGAACTG		59	NA	
Drosophila melanogaster	50	Gr89a	FBgn0038440	FBtr0089695	2	1	1	60	3R	12323929	12323949	ATGTCCTACTATGTATCGCTG		58	12323889	12323907	GGACTAGGCAGTTATTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gyc-89Da	FBgn0038435	FBtr0110963,FBtr0110962	1	2	2	60	3R	12299781	12299800	CTTCACATTTGTGCTGAACC		59	12299823	12299841	CTCAACGATCTTCTCACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204	2	6	8	195	3R	11782022	11785052	GACTGATGAGGAACAATGG		57	11785211	11785229	CCAATCGTTGTTAGTCGAG		58	NA	
Drosophila melanogaster	50	CG34276	FBgn0085305	FBtr0112471	1	1	1	90	3R	11752006	11752024	CTGCAGCAGAGTTATTCGA		59	11752148	11752166	AGTTGTAGAACCAATTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4221	FBgn0038385	FBtr0083201	1	1	1	92	3R	11757605	11757695	ATACAAGTCACAGATGCGG		59	11757751	11757769	ATCTGTGATGTTCAGGCAG		59	NA	
Drosophila melanogaster	50	CG31291	FBgn0051291	FBtr0083244	3	1	3	105	3R	11742057	11742135	ACCTATCGGTAATTGAGCG		59	11741970	11741988	GAGGCATAGCTCTTCTTGG		59	NA	
Drosophila melanogaster	50	CG14869	FBgn0038341	FBtr0083159,FBtr0083160	2	2	2	83	3R	11271113	11271131	CACAGTTCTGTGACAAGTC		58	11270981	11271066	TCGTCACAGTGAGATTGAG		59	NA	
Drosophila melanogaster	50	Surf4	FBgn0019925	FBtr0083118,FBtr0083117	1	2	2	80	3R	11170643	11170661	TTTAAGGTCGACATAGCGG		59	11170516	11170534	GAAGTCCCACAGAATGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	MRG15	FBgn0027378	FBtr0083125	2	1	1	87	3R	11103271	11103348	GATAATAAGAAAGGCAGCGC		59	11103203	11103221	TGTTGCTATCCTTAGACGG		58	NA	
Drosophila melanogaster	50	Zeelin1	FBgn0038294	FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034	1	4	5	120	3R	11002150	11004014	TACAGCCGAACAATTCCAG		59	11001978	11001996	GCTTGTCCCTCAAGTAGAG		59	NA	
Drosophila melanogaster	50	CG33331	FBgn0067628	FBtr0082998	3	1	1	62	3R	10712693	10712711	TCTTTACTTGGCAGGAAGG		59	10712734	10712755	GGATTATCAGAAGGATTGACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	btsz	FBgn0053555	FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530	3	5	5	111	3R	10634167	10634187	GCAGTACAACTATAAGCTGAG		58	10634011	10634096	TAGATACACCTTAACGTAGGG		58	NA	
Drosophila melanogaster	50	Neu3	FBgn0051314	FBtr0100189,FBtr0082973	3	2	2	83	3R	10496558	10497105	CTATCTGCTTAAGCAGGCA		59	10496493	10496511	TAGTCGTGACTATGGTCGT		59	NA	
Drosophila melanogaster	50	CG34383	FBgn0085412	FBtr0112622,FBtr0112621,FBtr0112624,FBtr0112623	3	4	4	134	3R	9583496	9584190	GAACTCTAAGAAACTGGAGCA		59	9584286	9584304	TTGATGTGAGAGCCATCAC		59	NA	
Drosophila melanogaster	50	rin	FBgn0015778	FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082800,FBtr0082796	1	5	5	65	3R	9476736	9476754	TACCTACGACGATCCTGAG		59	9476897	9476915	TTCTCCGGGAAGTATAGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14374	FBgn0040553	FBtr0082761	1	1	1	93	3R	9222619	9222637	CTTACACTGCTCCTGTGAC		59	9222544	9222562	AAGAAAGAGCTGACGACAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CtBP	FBgn0020496	FBtr0082701,FBtr0082702,FBtr0082699,FBtr0082700,FBtr0100161	1	5	5	80	3R	8845522	8845621	GAAATACACGAGAAGGTCC		57	8845665	8845683	CTCAAGATCCTCCTTTGTC		57	NA	
Drosophila melanogaster	50	CG7488	FBgn0038106	FBtr0082695	3	1	1	60	3R	8821953	8821972	CTGAATAAGATAGACGCCCT		58	8821994	8822013	TGAGTGTCTTGATCAGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18616	FBgn0028495	FBtr0082643	2	1	1	157	3R	8458165	8458183	GTCAGCCTAGAGTCTTTGG		59	8458303	8458387	ATGTGACCTAGCAATTTGTG		58	NA	
Drosophila melanogaster	50	Cyp9f2	FBgn0038037	FBtr0082599,FBtr0082598	1	2	2	89	3R	8229403	8229421	CAGCCATTCACATACTTCC		58	8229275	8229293	GTAGATAACAGCCTTTGCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	GstD8	FBgn0010044	FBtr0082575	3	1	1	60	3R	8205802	8205820	TATAATGACAGCCAAGGCC		59	8205843	8205862	GTCCATGACCTTCAATAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GstD10	FBgn0042206	FBtr0082609	3	1	1	71	3R	8191237	8191255	TATAGACCCGGATCTGCTC		59	8191184	8191202	CTTATCGAACTCCACACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31116	FBgn0051116	FBtr0082528,FBtr0082526	2	2	5	108	3R	7624476	7624583	ATTATGCTGCAAGTAAACCC		58	7624202	7624223	GTGATTGCTTTGAACTATCTCC		59	NA	
Drosophila melanogaster	50	CG14715	FBgn0037930	FBtr0082423	1	1	1	94	3R	7500237	7500255	GTTCGATAGCAGCTACTCC		59	7500313	7500331	ACATACCAAGGATTCCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL40	FBgn0037892	FBtr0082384	3	1	1	166	3R	7234211	7234229	GACTTTCAGATCATCGACC		57	7234358	7234377	CTGACGTAATCCTTAATGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4757	FBgn0027584	FBtr0082339	3	1	1	99	3R	6988483	6988502	GATTCCTTTGTTGAAGCGAG		59	6988564	6988638	TTTGTTGTGAGGATCACCC		59	NA	
Drosophila melanogaster	50	CG6608	FBgn0037852	FBtr0082334	1	1	2	65	3R	6707330	6707348	ACCGACCGAGATAATAGTG		58	6706827	6707302	TTAAGTATCATGCTCCACGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG4655	FBgn0037839	FBtr0082282	2	1	1	80	3R	6665262	6665349	CGATACTAGCCAATGATGCT		59	6665391	6665410	GCACGATAACCACTATCTCC		59	NA	
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0082254,FBtr0082255,FBtr0082253,FBtr0082256	1	4	6	81	3R	6340062	6346807	TTCAGCATTTAACGCATCC		58	6339999	6340017	ACTTGCAGTATCGTTAGGC		59	NA	
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0100455,FBtr0082254,FBtr0082255,FBtr0100454,FBtr0082253,FBtr0082256	1	6	6	89	3R	6417178	6419287	GAAGTCGACTCACTGATGG		59	6411627	6411647	GAAGTTATCGCATAACTCGTG		59	NA	
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190	1	8	8	80	3R	5954403	5954421	CTCCAGGGATTACTTGAGC		59	5954227	5954361	TATTCATGAACCGGATAGGTC		59	NA	
Drosophila melanogaster	50	CG12811	FBgn0037779	FBtr0082204	3	1	1	169	3R	5874166	5874185	CCTTTGTTGAGGATCAAGAC		58	5873472	5873490	CTCCGGGTAATACAGTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34360	FBgn0085389	FBtr0112576,FBtr0112577	3	2	5	60	3R	5808081	5812376	AACACATTTGGGAAAGGAC		58	5812400	5812418	GAAGTCCTCCTCATTTCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	unc-115	FBgn0037733	FBtr0082096,FBtr0082097	3	2	4	102	3R	5515591	5516165	CTTAGCGAGATGCACTACC		59	5515507	5515527	GATAGCTGTAGGTGTAGATGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG8866	FBgn0037679	FBtr0082055	2	1	2	138	3R	5158509	5158527	CTATACCTCTACGAGCGGA		59	5158332	5158407	TCATCCAGAATTCCAGCTG		59	NA	
Drosophila melanogaster	50	CG34135	FBgn0083971	FBtr0110905,FBtr0110904	3	2	2	60	3R	4576504	4576524	AGGAGTGATGTATTTACTGGC		59	4576398	4576417	GAAGTGAATGATCATGAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or85a	FBgn0037576	FBtr0081836	3	1	1	99	3R	4148557	4148578	CACGATGTTGTACTTCATTCAC		59	4148635	4148710	CTTGGCCATCTTTATATTGGTG		59	NA	
Drosophila melanogaster	50	dsx	FBgn0000504	FBtr0081760,FBtr0081761	2	2	3	60	3R	3761506	3761524	CAACATTGAAGAGGCTTCC		58	3761350	3761369	GGAGTACTCATTCACAACGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sp7	FBgn0037515	FBtr0081740,FBtr0081742,FBtr0081743	1	3	4	89	3R	3586916	3586934	CAACACGCAAAGTAGTTGG		59	3586987	3587737	TCCTACAACTTCCTTGTGC		59	NA	
Drosophila melanogaster	50	CG14598	FBgn0037503	FBtr0081534	3	1	1	60	3R	3266775	3266794	ACCAAGAAATCGTACTACCA		58	3266816	3266835	TGGTCTTCAACTTATCCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32468	FBgn0052468	FBtr0081592	2	1	1	74	3R	3139065	3139083	AATTGGCCCACAGATAGAG		59	3139009	3139030	CTTAAGAGTAGGCTTAAAGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pb	FBgn0051481	FBtr0089278	2	1	4	138	3R	2537664	2565281	AACAATCAGGCTGAATTCG		58	2537544	2537562	CTATCTCGATCCTCCTTGG		58	NA	
Drosophila melanogaster	50	CG10284	FBgn0037441	FBtr0081718	3	1	1	262	3R	2201117	2201135	TATGTCGAGCAGGAATCTC		58	2202328	2202347	GTAACCTTCTCGTAGACCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Osi19	FBgn0037429	FBtr0081707	1	1	1	118	3R	2161913	2162012	CAAGAAGGGCAAGAAACAC		59	2162094	2162112	TGAAGGCCTTGATCTTCAG		59	NA	
Drosophila melanogaster	50	noi	FBgn0014366	FBtr0078751	2	1	1	60	3R	1416497	1416518	CGAGTACCGCATATACATAGAG		59	1416458	1416476	GATTCGGAGGATGAAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or83b	FBgn0037324	FBtr0113193,FBtr0078794	2	2	2	117	3R	1233893	1233911	AACGGAGTGAATGTCTACG		59	1233433	1233812	CCATGACGGATGAACTCTC		59	NA	
Drosophila melanogaster	50	RpII18	FBgn0003275	FBtr0078787	3	1	1	72	3R	1197775	1197793	CATCGAGATCATAGCTCCC		59	1197829	1197847	GTACTTTGTGGTAATGCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199	2	14	15	115	3R	1100031	1100465	GAGCACAACGTATTTGGTG		59	1099934	1099952	CAATGGAACACCTTGAAGC		59	NA	
Drosophila melanogaster	50	CG14655	FBgn0037275	FBtr0078881	1	1	1	88	3R	604266	604284	TAACCACCAGAGGATTCAC		58	604026	604044	GGACAAGGAAAGAGACTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31526	FBgn0051526	FBtr0078929,FBtr0111213	2	2	2	185	3R	359280	359298	ATCTTCCCTTAGCCTTTGG		58	359447	359465	AAATAACTACGATCGTGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9795	FBgn0037234	FBtr0078907,FBtr0078906,FBtr0078905	1	3	4	99	3R	151095	151113	GATCAATCCGGGAATTCCA		59	151176	151429	ATTTCTCAAGGGTACGGAG		58	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338	3	5	15	173	3R	110113	120854	TTAAGTGCCGTTAAAGGAGG		59	120990	121008	CTTATCGCGAATGTCTTGC		59	NA	
Drosophila melanogaster	50	CG9766	FBgn0037229	FBtr0078980,FBtr0113191,FBtr0078979	2	3	3	184	3R	95720	95738	ATTCTGCTGAACAAGAAGG		57	95495	95572	CTAGCGTTCATAACCACTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	tRNA:CR32093	FBgn0052093	FBtr0076083	1	1	1	60	3L	11794620	11794641	GTTCTATGGTGTAATGGTTAGC		58	11794581	11794599	GAGATTTGAACTCGGATCG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11247	FBgn0037120	FBtr0113184,FBtr0078459,FBtr0078458	3	3	3	151	3L	21718590	21718668	CCTATCAGTGTAGGATCTGC		59	21718458	21718476	CATGTGGTTCTTTAGGTGC		58	NA	
Drosophila melanogaster	50	CG5976	FBgn0036999	FBtr0078200,FBtr0078199	1	2	2	60	3L	20468718	20468737	TCTATCCGATAAGCTACACC		58	20468759	20468778	CACAACTCGAGGTATAAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(z)12	FBgn0020887	FBtr0074917,FBtr0074916	1	2	2	80	3L	19914996	19915076	GAGAATGCAGAAACTCCAC		58	19914934	19914955	CTTCTCGTACAATATCAGTTCC		58	NA	
Drosophila melanogaster	50	Gyc76C	FBgn0013974	FBtr0100157,FBtr0100156,FBtr0100155	1	3	3	80	3L	19718583	19750645	AGATACACAGGTCGTTAAGTC		59	19718523	19718541	ACATCCTCGTACAGAATGG		58	NA	
Drosophila melanogaster	50	Nedd4	FBgn0036736	FBtr0075179,FBtr0075178	3	2	4	110	3L	17527654	17531772	AACAGTGATAACGACTCTGG		59	17531914	17531932	GATTCTGACATACGGGTCG		59	NA	
Drosophila melanogaster	50	CG33256	FBgn0053256	FBtr0075260	2	1	1	60	3L	16898138	16898159	GGAAATTGATGACGAAGATGAG		59	16898180	16898198	GTTGTTATCCGAGATTCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nudC	FBgn0021768	FBtr0075328	1	1	1	107	3L	16802360	16802379	AATCCGATAAGAGTGAGCTG		59	16802449	16812016	GAATCTTGAGCTCCACCTC		59	NA	
Drosophila melanogaster	50	CG32158	FBgn0052158	FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404	2	5	7	125	3L	16485860	16485878	TTTGACTGGGATGTGAGTG		59	16485591	16485772	AATGATTGTCGTATCCCTCC		59	NA	
Drosophila melanogaster	50	fax	FBgn0014163	FBtr0100477,FBtr0100478,FBtr0075413,FBtr0075412	3	4	4	190	3L	16398660	16398678	ATGAAGGACAAGTGCTTCC		59	16398260	16398433	TTCTCGTTTGACTTGTCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	fax	FBgn0014163	FBtr0100477,FBtr0100478,FBtr0075413,FBtr0075412	1	4	4	191	3L	16398660	16398678	ATGAAGGACAAGTGCTTCC		59	16398259	16398433	CTTCTCGTTTGACTTGTCCT		59	NA	
Drosophila melanogaster	50	Pdh	FBgn0011693	FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536	1	4	4	130	3L	16346821	16346839	ATCATTCCCGTTTACGGAG		59	16346645	16346663	ATGTCCGTCATTGTAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33690	FBgn0053690	FBtr0091670	1	1	1	102	3L	16194899	16194983	CCTATGATCACGATCTTATCG		57	16195045	16195065	GTGTATATGGCATAATCTCCG		58	NA	
Drosophila melanogaster	50	Notum	FBgn0044028	FBtr0075436,FBtr0075435	1	2	2	83	3L	16023316	16023335	GGATACCGACTATATCCCAC		58	16023445	16023463	ATTATCCACTCGCATTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	pgant8	FBgn0036529	FBtr0075578	1	1	1	91	3L	15678621	15678731	ATTTCAAGGAACTACCGCC		59	15678784	15678804	GGAATCACTGTTAAATGTGGC		59	NA	
Drosophila melanogaster	50	CG12316	FBgn0036483	FBtr0075651,FBtr0075652	3	2	2	102	3L	15128061	15128081	GGACCATATTGAATCATCTGC		58	15127562	15127997	GAACTGAGAACCACTTCGT		59	NA	
Drosophila melanogaster	50	CG13467	FBgn0036455	FBtr0075696	2	1	1	60	3L	14897940	14897959	CTTCTCGATAAGATCTCGCC		59	14897982	14898000	TGGAGAACACATATCGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32138	FBgn0052138	FBtr0075776,FBtr0075775,FBtr0114573	1	3	3	80	3L	14054599	14058180	GATATGCGATCAAGAAATGGTG		59	14058221	14058239	TTTGGGTCCAGATATGTGC		59	NA	
Drosophila melanogaster	50	CG32112	FBgn0052112	FBtr0075917,FBtr0075915,FBtr0075916	2	3	3	90	3L	12737833	12737915	CAGAAGCTATTTAGATCCTGC		58	12737967	12737985	TATCACATTTCAGGCCCTC		59	NA	
Drosophila melanogaster	50	CG4328	FBgn0036274	FBtr0076008	1	1	1	85	3L	12285040	12285058	CAGTATGTGGTCAAACAGG		58	12284917	12284992	CCATAGAAATCGTATCCCTG		57	NA	
Drosophila melanogaster	50	CG6928	FBgn0036240	FBtr0076049,FBtr0076050	3	2	2	95	3L	11999277	11999598	GAACTTTGAACAGATGCTCTC		59	11999655	11999673	CCAAAGGCTTTCGAAATGG		59	NA	
Drosophila melanogaster	50	CG5964	FBgn0036206	FBtr0076085	3	1	1	60	3L	11785272	11785290	CAAGAGCGGACTCTATTGG		59	11785230	11785248	CCTGAAACTTTCGATCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mtTFB1	FBgn0036197	FBtr0076112,FBtr0114551,FBtr0114552	3	3	3	61	3L	11703301	11703319	CCTAAGACTCAATTGCCGT		59	11703344	11703362	CGCATGCTAAAGATGTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rt	FBgn0003292	FBtr0076146	1	1	1	114	3L	11578106	11578183	GCTATACACAGACTGAGGA		57	11578010	11578028	GATTGTAGCTCCAGTAGCT		58	NA	
Drosophila melanogaster	50	CG7551	FBgn0036161	FBtr0076176	2	1	1	60	3L	11452190	11452210	GATGGAGTTCGATAACAACCT		59	11452231	11452250	GGCATAGTCACAGTAATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7560	FBgn0036157	FBtr0076173	2	1	1	81	3L	11418886	11418906	GAGGGATACACTAGTTTAGGC		59	11418949	11419034	CTCCAGCATCAATCTTTGC		59	NA	
Drosophila melanogaster	50	CG34012	FBgn0054012	FBtr0100067	1	1	1	97	3L	11102163	11102256	GCTAGTGCCTATGATTAACAC		58	11102086	11102104	TCTCCATGAAGAGCATCTC		58	NA	
Drosophila melanogaster	50	CG6409	FBgn0036106	FBtr0076273	3	1	1	95	3L	10874894	10874912	CAAGGAGTCTACCTCTGAG		58	10874817	10874835	TTCAGCAAGACTACCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6463	FBgn0047038	FBtr0076276	3	1	1	188	3L	10686961	10687108	ATCATTAAGGCGTCCACAG		59	10686592	10686809	AGTGATGTCCTTGTGTTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG32056	FBgn0052056	FBtr0076303,FBtr0076301,FBtr0076302	3	3	3	86	3L	10214550	10214568	TTCTTCGGCATCAATTTCC		58	10214221	10214501	GAACATGGCATCTATGAGGA		59	NA	
Drosophila melanogaster	50	nudE	FBgn0036059	FBtr0113158,FBtr0113159	2	2	4	96	3L	9894107	9894450	ATTCGCTTAAGAATCCCGAG		59	9894509	9894527	TTTCTTAACATGTCGGCCA		59	NA	
Drosophila melanogaster	50	nudE	FBgn0036059	FBtr0114600,FBtr0113158,FBtr0076344,FBtr0113159	3	4	4	135	3L	9893678	9893697	AGAGAATTTCGAGAAGATGC		57	9893794	9893877	CAGCTCTTGTTTGAGATCTC		58	NA	
Drosophila melanogaster	50	CG8108	FBgn0027567	FBtr0076339,FBtr0076340	2	2	2	103	3L	9858406	9858424	CACTACGACAACAGGAGTC		59	9858491	9859424	CGAGATGAGTCATAGCTGC		59	NA	
Drosophila melanogaster	50	CG6718	FBgn0036053	FBtr0076362,FBtr0076363,FBtr0076365,FBtr0076364	3	4	4	106	3L	9854428	9854506	TGACTCCAATTAACAACCGA		59	9854341	9854359	AAATGCGCGGAAATATGAG		58	NA	
Drosophila melanogaster	50	I-2	FBgn0028429	FBtr0112935,FBtr0076370	2	2	2	71	3L	9829169	9829187	ACTAAAGACTTCGCGTAGC		59	9829048	9829066	TTCAGCTCATCGAACTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3552	FBgn0035999	FBtr0076464,FBtr0114371	2	2	3	85	3L	9451449	9451520	TATGCGGAGCTTAATTCAG		57	9451569	9451587	ATCATGTGCTTAAAGGTGG		57	NA	
Drosophila melanogaster	50	CG32038	FBgn0052038	FBtr0076462	2	1	1	118	3L	9445112	9445130	CTGGTGGTTTCGATACCTC		59	9445429	9445448	CGGAGTAGTTGAAGTACCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	nwk	FBgn0035966	FBtr0076532	3	1	1	140	3L	9132701	9132720	GAGTACCTGATGTTAATGGG		57	9133108	9133126	CAGCACCGGATAGAATAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dhpr	FBgn0035964	FBtr0100531,FBtr0100532,FBtr0076531	1	3	3	88	3L	9128543	9128561	ATGAACCGTAAATGGATGC		58	9128613	9128631	TCTTGGGTCCACTTAAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jon66Cii	FBgn0035887	FBtr0076666	3	1	1	74	3L	8386466	8386484	TAACTGTCTACTTCGGAGC		58	8386410	8386429	TGATAAAGTTACCGTTGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Idh	FBgn0001248	FBtr0114547,FBtr0076670	3	2	9	115	3L	8351126	8351144	ATAATGAAAGGATGTCCGC		57	8350919	8350937	TTGGCTCTTAATGGAGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7565	FBgn0035833	FBtr0076738	1	1	1	80	3L	8082713	8082789	GTAATACGACTACTAGCTTGC		58	8082653	8082671	AACTCTTGATGCCAATGTC		58	NA	
Drosophila melanogaster	50	Tektin-C	FBgn0035638	FBtr0077115,FBtr0113147	1	2	2	68	3L	5788652	5788670	AGGATTTGTCCAAACAGCA		59	5788197	5788215	CCAGATTCTCGTACGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pmi	FBgn0044419	FBtr0091713,FBtr0091712	3	2	2	120	3L	5773860	5773941	TGTTGTCAATATCAGGTGGA		58	5774024	5774042	TACGGTGCAAGTATTTGGT		59	NA	Nonspecific
Drosophila melanogaster	50	CG10625	FBgn0035612	FBtr0077137,FBtr0077138	2	2	7	80	3L	5538086	5538104	ACCGTCAGTACTATTCGTC		58	5534359	5534445	CGTTAATACCGTTATAGCGTC		58	NA	
Drosophila melanogaster	50	Src64B	FBgn0003501	FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321	3	5	5	178	3L	4596210	4596228	TAAATCCCGCGATGAATCC		59	4595932	4596069	TCTCAAAGAACCAGTCTTCG		59	NA	
Drosophila melanogaster	50	CG32251	FBgn0052251	FBtr0073286	3	1	1	129	3L	4318188	4318270	GGAACATGAGAATCGAAAGAG		58	4318358	4318379	TCAAAGGAGCTGATCTATTAGG		59	NA	
Drosophila melanogaster	50	CG32262	FBgn0052262	FBtr0073184	3	1	1	60	3L	3809383	3809401	ATGTCCTACATGAAGCACG		59	3809341	3809359	ACGCAACTAACTTCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14973	FBgn0035451	FBtr0073130	3	1	1	125	3L	3507092	3507110	AGTTGAAGTCCACGAACTC		59	3507199	3507307	GATTCTCCGCCTTAATCGT		59	NA	Nonspecific
Drosophila melanogaster	50	CG14971	FBgn0035449	FBtr0073143	3	1	1	69	3L	3469319	3469397	TAATTGGAATCGAAGGTGC		57	3469268	3469286	ATCTCATTCGAAGTGTGGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14960	FBgn0035428	FBtr0073051	2	1	1	187	3L	3274418	3274436	TGAGTGAAAGCCTATTCGG		59	3275596	3275616	CAGGAACAGAGACTTCATACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32280	FBgn0052280	FBtr0073030,FBtr0073031,FBtr0073032	2	3	3	125	3L	3168251	3168338	GATTGCCCTATTTGGTTGC		59	3168426	3168445	CAATCCTATCGACGGTATCG		59	NA	InUTR
Drosophila melanogaster	50	CG12079	FBgn0035404	FBtr0073113	3	1	1	221	3L	3159215	3159291	CTAAGAAGGCGGATAAGCC		59	3159012	3159030	CAACCAGGTTGGTAAACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7955	FBgn0035244	FBtr0072754,FBtr0072756,FBtr0072755	2	3	3	107	3L	1621163	1621181	CTTGTTCAAAGGAGCTGTG		58	1621252	1621329	CTAGCAATGCCATATCCCA		59	NA	
Drosophila melanogaster	50	312	FBgn0029514	FBtr0072680	2	1	1	225	3L	1351621	1351639	AACCTGAAGTACGTTGACC		59	1351891	1351909	ACTCCAGATCGTATTCCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	scf	FBgn0025682	FBtr0089942,FBtr0089940,FBtr0089941	3	3	3	60	3L	1299623	1299641	TGGTTATTTGAACGAGGAG		57	1299665	1299683	CGAATGATCGAAGTCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9205	FBgn0035181	FBtr0072621,FBtr0072622	3	2	2	238	3L	1035939	1036032	GTTTCTCACGGAACAATGC		59	1036234	1036252	AACTGGAGACTATCCTTGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG34269	FBgn0085298	FBtr0112464	3	1	1	75	3L	528450	528469	TACTGGACTCCCTTACTGAC		59	528505	528525	CTCAAACGACTTGTGTAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGEF3	FBgn0035128	FBtr0089654	2	1	4	109	3L	298100	298118	TTGTCATGAAGGATCCACG		59	299009	300906	TATTTGCTGTGACAAACTCG		58	NA	
Drosophila melanogaster	50	CG16971	FBgn0035114	FBtr0072497	1	1	3	122	3L	225776	225794	AACAAGAAACTACGTCGCA		59	226794	226812	CATTTATACATGCCCGCAG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	snoRNA:Psi28S-2444	FBgn0082987	FBtr0113515	3	1	1	65	2R	15330668	15330686	CTGATGCTCAGTGAATGTG		58	15330715	15330733	GCATGGAATGTAGCAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13594	FBgn0035041	FBtr0072336	1	1	1	83	2R	20503718	20508238	TCACGTAAATCCAGGTGAC		59	20503653	20503671	TTAATTAGCTGCAGTGTGC		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	pio	FBgn0020521	FBtr0072312,FBtr0072313	2	2	2	185	2R	20476321	20476910	ACTTAATCACAATCGCAGC		58	20479585	20479603	TAATGGTGATCAGCATCGA		58	NA	
Drosophila melanogaster	50	CG13576	FBgn0034994	FBtr0072274	3	1	1	60	2R	20138437	20138455	TTACAACATCACGAATGGG		57	20138395	20138413	CACATAATTGTCCGCTAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bgcn	FBgn0004581	FBtr0072232	1	1	1	101	2R	19741207	19741281	TGAAATCTTAGATGCGTGTG		58	19741125	19741143	ATAATCAAGTTGCCGACAC		58	NA	
Drosophila melanogaster	50	CG9812	FBgn0034860	FBtr0072026	1	1	2	67	2R	19301196	19302034	CTGATCAACCAAGATCGAC		57	19301147	19301165	ACGTATACGACACGTTGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3530	FBgn0028497	FBtr0072028,FBtr0112940,FBtr0072029	2	3	3	153	2R	19279383	19279401	TTGAGAAGCTTCCCTTGAG		59	19279181	19279266	AATTTGTTGATGGACACCG		58	NA	
Drosophila melanogaster	50	CG3092	FBgn0034835	FBtr0071999	2	1	1	60	2R	19121299	19121317	CGTCCTCAACTATGATCCG		59	19121341	19121359	CTAAGGCTTATCGTCGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp58d	FBgn0034770	FBtr0071872	1	1	1	142	2R	18594759	18594831	TTCTATCGTGCTTTGTGGA		58	18594936	18594955	CATGGCAATGTGATAATCCT		58	NA	
Drosophila melanogaster	50	CG3292	FBgn0034710	FBtr0071783	1	1	1	87	2R	18092629	18092647	TCAGCTTAAGGGCAATACC		59	18092496	18092578	ATTGGAGCAGTATGTCCTG		59	NA	
Drosophila melanogaster	50	CG15675	FBgn0034648	FBtr0071664	2	1	2	80	2R	17553013	17553715	AAGAACACTGGAATCTGTG		57	17553759	17553777	CATTTGTGACGAACATGTG		57	NA	
Drosophila melanogaster	50	CG33226	FBgn0069056	FBtr0071694	2	1	1	139	2R	17426153	17426231	AATGGTAAACCGATCTGTG		57	17426032	17426052	CTAGTTGTCTGGAGTATTGTG		57	NA	
Drosophila melanogaster	50	CG10494	FBgn0034634	FBtr0071699,FBtr0071700	1	2	2	88	2R	17405524	17405545	GCGATAGTGATTTCAATGACAG		59	17405398	17405416	ATCAACCTCTTCGTCTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9485	FBgn0034618	FBtr0071601,FBtr0071599,FBtr0071600	3	3	3	81	2R	17205225	17205243	ACTTTGATGCCATTGTCAG		58	17205286	17205366	CCATTCTTAATGAAGTCTGGC		59	NA	
Drosophila melanogaster	50	Act57B	FBgn0000044	FBtr0100177,FBtr0071519	3	2	2	61	2R	16832529	16832547	ACGGTATCATCACCAACTG		59	16832572	16832590	CTCGTTGTAGAAGGTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	exu	FBgn0000615	FBtr0086243,FBtr0086242,FBtr0086244	1	3	3	133	2R	16557493	16557511	TATGCTGAAGTCGATGCAG		59	16557295	16557313	AGATAAGCACAATCCCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	maf-S	FBgn0034534	FBtr0086230	3	1	1	74	2R	16528827	16528845	TTAAAGAATCGCGGATACG		57	16528883	16528901	CTTCTTAGTCTCCAGCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp56b	FBgn0046880	FBtr0086480	3	1	1	60	2R	15586428	15586447	TAAAGAGTTTGCTTACCAGC		58	15586387	15586405	TAGACAAAGTCACAGGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Scs-fp	FBgn0017539	FBtr0086552,FBtr0086553,FBtr0086554	3	3	3	136	2R	15280457	15280475	CTGAAGATGCAGAAGACCA		59	15280283	15280358	CAGATAAGCGACCTATCGAC		59	NA	
Drosophila melanogaster	50	Scs-fp	FBgn0017539	FBtr0086552,FBtr0086553,FBtr0086554	1	3	3	93	2R	15280210	15280228	GATGACTATTGTGAGCGCT		59	15280075	15280155	GCTGAAATCGTATTCATCCTC		58	NA	
Drosophila melanogaster	50	CG30127	FBgn0050127	FBtr0086556	2	1	1	101	2R	15216060	15216078	GACCGATGCACAATATGAC		58	15215763	15215781	CAGTGGACGTGTTAATGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15100	FBgn0034401	FBtr0086627	1	1	1	107	2R	14735331	14735409	CTCAATGCTGAGAAACCAC		58	14735242	14735260	AAGTTCGTCGATGAAGGAC		59	NA	
Drosophila melanogaster	50	CG15080	FBgn0034391	FBtr0086613	3	1	1	141	2R	14680627	14680646	ATAACTTCGAGAGTGAACCG		59	14680750	14680820	TTCTCTGGCTTCAGATTGG		59	NA	
Drosophila melanogaster	50	CG15092	FBgn0034388	FBtr0086641	3	1	1	216	2R	14646633	14646652	TTTATACAGACTAGACGCCG		58	14646373	14646454	AATTGCTTAAACCCTGCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG30121	FBgn0050121	FBtr0086644	3	1	1	60	2R	14628011	14628030	CAGTCCTTGAGATGTTTCCA		59	14627970	14627988	TGTTCAGGTTCTGTCAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS28	FBgn0034361	FBtr0086714	2	1	1	100	2R	14502017	14502036	TTTGGTTGGAAGTTTCACTG		58	14501879	14501897	AACTCCAAGTCCTTGATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dp1	FBgn0027835	FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682	2	6	6	84	2R	14306395	14306413	GATCGATAAACGCATCCAC		58	14306458	14306564	GATGTTCACCTTATTATCCTCG		58	NA	
Drosophila melanogaster	50	GstE10	FBgn0063499	FBtr0086726	3	1	1	67	2R	14284868	14284886	CATGAATTCCATACGCTGG		58	14284819	14284839	GGATTCTTGCGTAACATATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpr13	FBgn0034286	FBtr0100051	3	1	1	83	2R	13865173	13865194	ATCTTCTGGTATCACGATAACC		59	13865038	13865129	AGATTGAAAGTCCGGTTCC		59	NA	
Drosophila melanogaster	50	RhoGAP54D	FBgn0034249	FBtr0086900,FBtr0086901	2	2	2	100	2R	13477485	13477504	TAATAGTCCCACAGAGACAC		58	13477351	13477422	GGGTGAGATTCTTCTCCAG		59	NA	
Drosophila melanogaster	50	CG4844	FBgn0061354	FBtr0100122,FBtr0100123	1	2	2	60	2R	13395104	13395122	TGATCGATGATTCCAGCTC		59	13395146	13395164	TCATGGTTCAGCTTAAAGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30104	FBgn0050104	FBtr0086928,FBtr0086927	3	2	2	85	2R	13378861	13378938	GGATGCTATATCCTTGGGC		59	13378987	13379005	GTACAGGAAAGGTGACCTC		59	NA	
Drosophila melanogaster	50	CG5522	FBgn0034158	FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026	1	6	6	81	2R	12676157	12676301	CTACTACACTATAGCAGCCTC		58	12676344	12676362	ATCCAACTGCTTGATGGAG		59	NA	
Drosophila melanogaster	50	CG8092	FBgn0033998	FBtr0087403,FBtr0087402	3	2	2	82	2R	11099262	11099280	AGCAGACAAGAGTAACCAC		59	11099140	11099159	AATACTCCAGTCCTTGAACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp6a17	FBgn0015714	FBtr0087451	1	1	1	60	2R	10762455	10762476	AGGATGTTCAGGATAAACTCAG		59	10762497	10762515	TCTTTGTTATGCTTGCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10209	FBgn0033971	FBtr0087462	3	1	1	130	2R	10735327	10735348	CAAGAAGACGATTATTCAGTGG		59	10735167	10735185	CCTGGTTTAGTTCGATCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	kn	FBgn0001319	FBtr0112809,FBtr0087465,FBtr0112810	1	3	3	117	2R	10662968	10663054	CGTCTATGTCTCAGCTCTC		58	10662869	10662890	CTTGAGGATTATCTCTTTCTGG		57	NA	
Drosophila melanogaster	50	CG30480	FBgn0050480	FBtr0087478	3	1	1	60	2R	10564875	10564895	GCCTACAGGTTATATTCCCAG		59	10564835	10564856	GACATTCTCGACAATAGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33469	FBgn0053469	FBtr0087504	2	1	1	60	2R	10493522	10493542	CGGTGGTACATTTATTATGGC		59	10493482	10493501	TTCGAATCCTTTCCAGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ih	FBgn0028428	FBtr0100370,FBtr0100369,FBtr0100371	3	3	4	107	2R	10179873	10184210	GGGAGGAGGTCTATTTCCT		59	10184281	10184299	CTAAGAACTGCAAGCAACC		59	NA	
Drosophila melanogaster	50	CG8494	FBgn0033916	FBtr0087535	3	1	1	100	2R	10128073	10128150	GATCCCAAAGAGTTTATTGCC		59	10128212	10128230	AAGAACTCCTGGGTATCGT		59	NA	
Drosophila melanogaster	50	CG18327	FBgn0033904	FBtr0087522	2	1	1	96	2R	10054979	10054997	GAGATCTCATTCGCAAAGG		58	10055057	10055184	GAAGTTGCGTCTTGATCAG		58	NA	
Drosophila melanogaster	50	tum	FBgn0086356	FBtr0087641	2	1	1	138	2R	9744167	9744185	GATGAAGGCACTTCTTGAG		58	9743992	9744065	GAAGGGAGTTGCATATAGC		57	NA	
Drosophila melanogaster	50	fl(2)d	FBgn0000662	FBtr0087647	3	1	2	137	2R	9709046	9711300	GAAGATGAGATCGAGAATCTC		57	9708866	9708947	AATTTGGCTCACATAGTCC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG18369	FBgn0033860	FBtr0087624	3	1	1	60	2R	9484407	9484426	CAATCTGTTTGGAACACCAC		59	9484449	9484467	CCAGATTTGAGAATCCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4663	FBgn0033812	FBtr0087761	1	1	1	253	2R	9116539	9116557	CTTGATCATGAAGCTGCTG		58	9116168	9116186	TAATTGGAATGATGCCGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12374	FBgn0033774	FBtr0087854	3	1	1	164	2R	8650765	8650783	CTACGGACAGTATGTCCTC		58	8650908	8650988	GAAACGACATAGTTAAGCAGAC		59	NA	
Drosophila melanogaster	50	ox	FBgn0011227	FBtr0087861	1	1	1	110	2R	8645003	8645022	TCAACCTAACAAATCAGCTG		58	8644912	8644930	AGGGTGTTGTAGATAACCT		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG8778	FBgn0033761	FBtr0087880	3	1	1	60	2R	8539188	8539209	GGTTAACCATGTAGTGAAACAG		59	8539149	8539168	TTTAAGTGCCTGCTGATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DebB	FBgn0000426	FBtr0088010	3	1	1	191	2R	8071685	8071703	ATAAACAGAATGTCGGCTG		57	8071512	8071530	AAGATTACCAGTCACGGAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	inv	FBgn0001269	FBtr0088070,FBtr0088067	2	2	4	107	2R	7394460	7394532	TATTTATGGAGTATCCGCCG		59	7394602	7394620	ACAATCATAGCTCTTCGGG		59	NA	InUTR
Drosophila melanogaster	50	alphaTry	FBgn0003863	FBtr0088161	1	1	1	77	2R	7232250	7232268	TAACACCATGGTCAACGAC		59	7232191	7232211	CTAATAGCCTTGATGCTTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr47Ed	FBgn0033601	FBtr0088188	2	1	1	60	2R	7148992	7149010	TTCGAAGACATCTGACGAC		59	7148950	7148968	CCAGTCGTTGATATAGCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13223	FBgn0033599	FBtr0088113	1	1	1	80	2R	7145171	7145246	GCCTACATAATAGTTCGAGGA		58	7145288	7145306	AGCCACAGGAATCATTAGG		59	NA	
Drosophila melanogaster	50	Or47a	FBgn0026386	FBtr0088111	2	1	1	61	2R	7139095	7139184	CCTTCTCATCGATTGTTCG		58	7139208	7139227	TTAGGAGAATGATCTCAGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	skf	FBgn0050021	FBtr0114569,FBtr0114570,FBtr0088196	2	3	3	105	2R	7117513	7117534	CTTGTAAAGGATAAGCAAGGAC		59	7117366	7117447	ATCAGCTTGGAAAGAGCAG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Syx6	FBgn0037084	FBtr0088104,FBtr0088103	3	2	3	129	2R	7108119	7108443	CACTATCAGCATCGTTGAG		57	7108535	7108554	GTTCAGGCTCATCTTATCCT		58	NA	InUTR
Drosophila melanogaster	50	Syx6	FBgn0037084	FBtr0088104,FBtr0088103,FBtr0088102	3	3	3	79	2R	7109104	7109122	AAAGTTGCCAAAGTCTTGC		59	7109317	7109337	AACAATAACAGTCCGGATAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12896	FBgn0033521	FBtr0088315	2	1	1	104	2R	6314732	6314813	CAACGTTGACGAGATTCTG		58	6314583	6314601	ATCATGACCTTAGTGCCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG33475	FBgn0053475	FBtr0088318	3	1	1	60	2R	6298482	6298501	TATCCAAGGTTTACTCGGTG		59	6298441	6298462	CATCTAAATACCGTGGAATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ndg	FBgn0026403	FBtr0088349	2	1	2	174	2R	6206484	6206502	AGAAAGGAATGCCGATCTG		59	6206703	6206781	ATCGGGTCTAATTGCACAG		59	NA	
Drosophila melanogaster	50	CG33758	FBgn0053758	FBtr0091759	1	1	1	82	2R	5341166	5341185	ACCTAAGGCCATATCTTGTC		58	5341052	5341071	CTCGAAGTCTTTACATTCCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8213	FBgn0033359	FBtr0088670	2	1	1	124	2R	4858213	4858231	GTGACCAAGAATGTCAAGC		59	4858039	4858126	CAAATGGGCACTATATGGGT		59	NA	
Drosophila melanogaster	50	Ggamma1	FBgn0004921	FBtr0088645,FBtr0088647,FBtr0088648,FBtr0088649,FBtr0088646	3	5	5	101	2R	4789860	4789879	TAATGTCATCATCCCTGCAG		59	4789943	4789961	TCATCTTAGCGCATGACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LvpD	FBgn0002569	FBtr0088747	1	1	1	72	2R	4342798	4342816	AACCTACGAGTATGTGCTG		59	4342911	4342929	TCTCTGTGACAGATCTGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14757	FBgn0033274	FBtr0088805	3	1	1	151	2R	4060758	4060776	TTTCAACGACGTGATTGTG		58	4060224	4060242	TCAGCAGAAGATCGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Or43b	FBgn0026393	FBtr0088887	3	1	1	70	2R	3808550	3808632	CACTAACATCAATGTAGCCA		57	3808499	3808517	TTTGGTCCAGGTTCATACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12159	FBgn0033232	FBtr0088888,FBtr0088889	2	2	2	60	2R	3803454	3803472	CTGTTGTCTACATCCTCGT		58	3803412	3803431	ACCCTCATAATAAGCAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30502	FBgn0050502	FBtr0089001	3	1	1	128	2R	3334678	3336933	ATAGTATGGAGCACCTAGTG		57	3334569	3334587	AGTACCAAGGGTCAAAGAG		58	NA	
Drosophila melanogaster	50	sPLA2	FBgn0033170	FBtr0088973	2	1	3	65	2R	3330818	3330836	CGAGATTATCGAGTCCCAC		59	3330865	3330883	TACATGGGAAACCAGTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012	3	7	7	84	2R	3287432	3287450	GATCTACGACAAGGAGACG		59	3287308	3287384	GGTGACTTCATTCCTGGTC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111068	3	1	60	99	2R	3245024	3249236	ATTGGTCATCACAGAACCC		59	3244943	3244962	TATAGCTAGACTGCGATCCT		59	NA	
Drosophila melanogaster	50	Spn43Aa	FBgn0024294	FBtr0089041	3	1	1	110	2R	3036098	3036116	TTCAATCTGCTCGAAGACC		59	3036187	3036388	GATTCCCATCTTATGCAATGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Tsp42Ep	FBgn0033137	FBtr0089062	1	1	1	112	2R	2944403	2944421	CCAGCAGATCTATCCAAGC		59	2944242	2944328	GTATGAAGATCTCAAGGCCA		59	NA	
Drosophila melanogaster	50	CG9460	FBgn0033115	FBtr0086164	1	1	1	105	2R	2774861	2774881	ATAAGCTCCCAATTGAGAAGG		59	2774948	2775372	TCTTAATGCCCAACTCCTC		58	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086205,FBtr0086204,FBtr0086197,FBtr0086201,FBtr0086196,FBtr0086198,FBtr0086202,FBtr0086199,FBtr0086200,FBtr0086203	1	10	11	67	2R	2764942	2764960	AAGTGGAATTGTCTGAGGT		58	2764829	2764847	AAATTCAGCCTGATCGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fmo-2	FBgn0033079	FBtr0086148	2	1	1	88	2R	2532058	2532077	GGAACACTTCAAGCTAAAGG		58	2531879	2532007	ATACGTAGACCTCCCAGTC		59	NA	
Drosophila melanogaster	50	Cyp6w1	FBgn0033065	FBtr0085987	3	1	1	60	2R	2062211	2062230	GACTTGGACTACTTAGTTGC		57	2062253	2062271	CACTAGTTTCAAATCCGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40282	FBgn0039979	FBtr0111272	1	1	1	90	2R	618558	618578	GGAAATCAAGGAGGATTAGGA		58	618488	618506	GACCACTTCCCTGAATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17683	FBgn0040002	FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300	3	4	5	80	2R	19474	19549	AATCACTTCAGTTGAGGTG		57	19591	19611	CAGTCTAAATCAAGGAGATCG		57	NA	
Drosophila melanogaster	50	Cht3	FBgn0022701	FBtr0111127	1	1	1	82	2L	22896775	22896794	TTAATCGTGTACTCAGAGGT		57	22896655	22896730	GATGTTTGGCTTCATTGTG		57	NA	
Drosophila melanogaster	50	CG40439	FBgn0058439	FBtr0111233,FBtr0111232	1	2	2	60	2L	22690659	22690677	ATTAACCCTGAAATGAGCC		57	22690617	22690635	TTAACTCAGAATAGCGTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His4:CG33887	FBgn0053887	FBtr0091891	1	1	1	60	2L	21489381	21489399	GAACGTAATTCGTGATGCC		59	21489339	21489357	GGCTGTAACTGTCTTCCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	crc	FBgn0000370	FBtr0100139,FBtr0081512	3	2	3	89	2L	21312033	21312106	CTTTGCAAATGGCATTACTC		57	21312158	21312176	ATCTCCTCATCACTAAGCA		57	NA	
Drosophila melanogaster	50	CG31626	FBgn0051626	FBtr0081485	3	1	2	84	2L	21236687	21236706	CCCACATTCTTCAAGAAGTG		58	21233881	21233899	GTGATCATTAACCCAGAGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081442,FBtr0081441,FBtr0081444,FBtr0081447	2	4	8	102	2L	20876930	20876948	CATCCAAATGATGTCCCAC		58	20874424	20875092	CGTGAACAGAAATTGTCTATCC		59	NA	
Drosophila melanogaster	50	CheB38a	FBgn0067312	FBtr0081453	3	1	1	88	2L	20818105	20818126	CTATCCTGGTACAAGTATTGGT		59	20817982	20818056	ACAAGGACAGTACCTTTGG		59	NA	
Drosophila melanogaster	50	CG40169	FBgn0058169	FBtr0100179	2	1	2	211	2L	20238606	20238626	CGCCTTTAAGTCTTCTTTGTC		59	20245416	20245434	GTACCAATTGTGCAGTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	pr	FBgn0003141	FBtr0089396,FBtr0089395	3	2	2	87	2L	20074323	20074778	CTATACAGTTGAGATAACCGTC		57	20074257	20074276	TTCTATAGCCTCTTTCAGCT		57	NA	
Drosophila melanogaster	50	CG10462	FBgn0032815	FBtr0100351,FBtr0100352,FBtr0081325	1	3	3	90	2L	19733222	19733240	GACAAACGTTTCCGAACTC		59	19733057	19733169	CTAACGAGCATATCTTGCAC		58	NA	
Drosophila melanogaster	50	CG10263	FBgn0032812	FBtr0081265	1	1	3	214	2L	19581472	19581490	ATCAATCACAGACATGTGG		57	19581170	19581191	GGTATACTACCAATACTACCGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5674	FBgn0032656	FBtr0081023,FBtr0081021,FBtr0081022	3	3	3	75	2L	17969402	17969420	AAGTTCATCATGAGGGAGC		59	17969459	17969477	GTTCCATCTGCCTGTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017	3	6	12	102	2L	17651479	17652674	TCTGATACTACTCGTCTTGGT		59	17651397	17651415	GTTGATGATATTCTCGCGC		59	NA	
Drosophila melanogaster	50	fws	FBgn0024689	FBtr0081000,FBtr0080999	1	2	2	101	2L	17479200	17479218	AGAGGATGTCTACCACAGG		59	17479059	17479077	TCTGCTTGTCATCGAACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15134	FBgn0032621	FBtr0080949,FBtr0114502	1	2	2	80	2L	16904393	16904471	CTAAGACAGGGAATCATTGTG		58	16904511	16904531	CTTGTACTGATGCTCAAACAG		59	NA	
Drosophila melanogaster	50	CG13283	FBgn0032613	FBtr0080928	2	1	1	60	2L	16835818	16835837	GTTTCGTATCGCCTTATGTG		59	16835777	16835795	TGCCTCAAGAAATATGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mdy	FBgn0004797	FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917	3	4	4	88	2L	16820784	16820802	ACATAACGCCCTAATCCTG		59	16820919	16825419	CAATTATTTCCATGGCTAGACC		59	NA	
Drosophila melanogaster	50	CG13272	FBgn0086673	FBtr0080914	1	1	1	208	2L	16811804	16811822	AGACTTTGGAGACGATTGG		59	16813594	16813612	ATTACTTTGACCAGTGCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31782	FBgn0051782	FBtr0080938	1	1	2	80	2L	16702251	16728201	CGAATATGGATCCTCGTATACC		59	16702192	16702211	CACATTGGGAACAATTGTGG		59	NA	
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876	3	7	7	169	2L	16472183	16472201	GAATATTCAGAGCCTGCTC		57	16469244	16471862	TCTGGTAAAGCACTCTCAG		58	NA	
Drosophila melanogaster	50	cni	FBgn0000339	FBtr0080849,FBtr0080848	1	2	2	98	2L	16309918	16310008	CATATACGGCATGGTTTATTCG		59	16309841	16309859	ACAACTAATACACGACGCT		59	NA	InUTR
Drosophila melanogaster	50	CG11865	FBgn0028947	FBtr0080753	1	1	1	60	2L	15617537	15617556	CAGCGGGATAAATATGTGAG		58	15617579	15617597	AGTTATGTTCATGACCGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mol	FBgn0086711	FBtr0080676,FBtr0111014,FBtr0111015	3	3	5	99	2L	14992319	14992337	TTTAGTCATCTTTCCGGGT		58	14984074	14984205	CAGGCGAGTGATTAATATGAC		58	NA	
Drosophila melanogaster	50	mol	FBgn0086711	FBtr0080676,FBtr0111014,FBtr0111015	2	3	5	98	2L	14992318	14992336	TTAGTCATCTTTCCGGGTG		58	14984074	14984205	CAGGCGAGTGATTAATATGAC		58	NA	
Drosophila melanogaster	50	CG31769	FBgn0051769	FBtr0080602	3	1	1	60	2L	14110413	14110431	TGAGGTGATTAGGGAAACC		58	14110371	14110390	CGTTCTCCTTATGAGTTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sec71	FBgn0028538	FBtr0080537,FBtr0080538	2	2	2	96	2L	13798752	13798770	TTTCTTCAAGATGTACGGC		57	13799016	13799034	GTAGTAGTTGGAAACGTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31729	FBgn0051729	FBtr0080462,FBtr0080461	2	2	2	80	2L	13298388	13298407	GTGATGAATAACTCACAGCC		58	13298450	13298570	GCAGAACAGAACCTTAGTC		57	NA	
Drosophila melanogaster	50	CG31858	FBgn0051858	FBtr0080381	1	1	1	60	2L	12497154	12497175	CTGACTGTTTCGAAATTACTGG		59	12497115	12497133	GATTCAATTTGATTGGCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-thr	FBgn0027081	FBtr0080333,FBtr0080332,FBtr0080331	2	3	3	63	2L	12104541	12104694	ATACTCGCAAGGAACTCAG		59	12104721	12104739	TTCTCCCAGAAGACATTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Mt2	FBgn0028707	FBtr0080329,FBtr0110911	3	2	2	60	2L	12097162	12097181	AAAGATCTGGGAAGAAATGC		58	12097204	12097222	GGCAATTTGTGAAAGACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14946	FBgn0032405	FBtr0100290	2	1	1	165	2L	12063862	12063938	CAGGGATCTGATTCGAACC		59	12063715	12063733	GATGGTTACCTCCATGAGG		59	NA	
Drosophila melanogaster	50	CG5381	FBgn0032218	FBtr0080060	1	1	1	80	2L	10319557	10319634	CGCGATCTAAACGATAATTCC		59	10319497	10319517	CCTATCAATATCTTGCAGGGA		59	NA	
Drosophila melanogaster	50	CG5390	FBgn0032213	FBtr0080064	2	1	1	80	2L	10304766	10304841	CCAGTAGCATTGTTGTGAG		58	10304704	10304722	TGACATATCGGTCTTCGTG		59	NA	
Drosophila melanogaster	50	CG5640	FBgn0032207	FBtr0080077,FBtr0080075,FBtr0080076	2	3	3	80	2L	10275748	10275766	ATGCTTTCCTAGCATATCG		57	10275619	10275705	GATATAAGACGCCGATTGAG		58	NA	
Drosophila melanogaster	50	CG5899	FBgn0032157	FBtr0100280,FBtr0079901,FBtr0100279	1	3	3	91	2L	9910428	9910502	CGTTGTTTGCTAAGAAGGG		59	9910355	9910373	CATGATACGCTTTGCTCTC		58	NA	
Drosophila melanogaster	50	Hnf4	FBgn0004914	FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846	3	4	4	101	2L	8688854	8688935	TCTTCTTCGATCCCAATGC		59	8688771	8688790	GCCGATCTGATATGTAGTCC		59	NA	
Drosophila melanogaster	50	CG14273	FBgn0032024	FBtr0079605	2	1	1	137	2L	8343713	8343731	AAGTTGTAAGCGAAGAGGA		58	8343832	8344080	ATTCGTTAAGTTGGAGCCT		58	NA	
Drosophila melanogaster	50	CG31606	FBgn0051606	FBtr0079578,FBtr0079577	1	2	2	60	2L	8147879	8147898	TCGAATATGCAGAGTACAGG		58	8147921	8147939	ACTATGGTCTTTCCATGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL36A	FBgn0031980	FBtr0079546	1	1	1	151	2L	8042125	8042457	CCCATCTTCAGGAAGAAGG		59	8041992	8042010	AACTGGATCATCTGTCCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13796	FBgn0031939	FBtr0114496,FBtr0079504,FBtr0079503,FBtr0079505	2	4	4	81	2L	7728559	7728579	GTGTGCCTTACTCATATTACC		58	7728434	7728516	CAACGTGATCCTCAAAGTG		58	NA	
Drosophila melanogaster	50	santa-maria	FBgn0025697	FBtr0079464,FBtr0079465	3	2	2	155	2L	7446348	7446429	ATCTGTAGATAATGGCACCC		58	7446212	7446230	TCTGGGTAGTAAGGATCGG		59	NA	
Drosophila melanogaster	50	CG5171	FBgn0031907	FBtr0079440,FBtr0079439,FBtr0114588	3	3	3	123	2L	7404096	7404115	ATAATTGGTCGCAGAAAGTG		58	7404267	7404285	GTTTGAATCTGGGCATCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Mnn1	FBgn0031885	FBtr0110978,FBtr0079401	3	2	3	84	2L	7059186	7060972	CACAAAGGAGGAGAAATCCA		59	7061019	7061037	ATTGAGAATCTTCTCGCCA		58	NA	
Drosophila melanogaster	50	CG10354	FBgn0031868	FBtr0079345	3	1	1	60	2L	6908261	6908279	TCGAAACATCTACGAGGAC		58	6908301	6908321	CAGATTGTCAAACTCTATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp	FBgn0031850	FBtr0079313,FBtr0079311,FBtr0114488,FBtr0079312,FBtr0079314	3	5	6	105	2L	6701761	6701779	TGGATGTTGCATCACTCTC		59	6700488	6700562	CGACGAGGTCTAATGTGTC		59	NA	
Drosophila melanogaster	50	CG9526	FBgn0031815	FBtr0079258,FBtr0079259	3	2	2	86	2L	6457036	6457054	ACTACGATGTGGAATTGCA		59	6457102	6457346	AATAGGGACCTGTAAGAACTC		58	NA	
Drosophila melanogaster	50	CG13983	FBgn0031792	FBtr0079285	1	1	1	60	2L	6264177	6264196	GAATCAGGAATCGGATAGAC		57	6264136	6264154	GTAGTACGGGTAGTAGGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34180	FBgn0085209	FBtr0112373	2	1	1	65	2L	6060733	6060751	TAAGCATATGCAGCTTTCC		57	6060780	6060798	TAATCACGGCCTGTATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lid	FBgn0031759	FBtr0079231,FBtr0079232	3	2	2	83	2L	5993340	5993484	GGGTATCAATAAGGTGCGA		59	5993275	5993293	AACAACTCTAGCTCCTCCA		59	NA	
Drosophila melanogaster	50	Hsp60C	FBgn0031728	FBtr0079111,FBtr0079112,FBtr0079110	2	3	3	60	2L	5668985	5669003	CGTACTGCAAAGATCAGTC		58	5669027	5669045	CGAACCTAACATCCTTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31646	FBgn0051646	FBtr0079114	3	1	1	98	2L	5641946	5645468	ATTCCCGAGAAAGATCTTCC		59	5641867	5641885	CAAATTGTCGACTACGCAC		59	NA	
Drosophila melanogaster	50	Sgs1	FBgn0003372	FBtr0077393	1	1	1	60	2L	4937563	4937583	GTGAAAGCTAATTACGACTGG		59	4937604	4937623	CGGGTATTATCTCCTCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hoe1	FBgn0041150	FBtr0077395,FBtr0077398,FBtr0077397,FBtr0077399,FBtr0077400,FBtr0077396	1	6	6	105	2L	4909614	4909686	ATTCTATGGGTTTCCGCTG		59	4909527	4909546	GATTCAAGGTGCTATTCTGC		58	NA	
Drosophila melanogaster	50	CG3355	FBgn0031619	FBtr0077376	2	1	2	185	2L	4652028	4652046	CCTAACTACGATCCCAACC		59	4652461	4652479	CAGATAGTTGGAGGTGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15429	FBgn0031596	FBtr0077428	1	1	1	76	2L	4353597	4353615	GCGAAAGTTCTCAAATGGG		59	4353718	4353736	CAGTCAGTCCATTCTCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Atet	FBgn0020762	FBtr0077427,FBtr0112899,FBtr0112898,FBtr0077426	1	4	4	80	2L	4343788	4343808	GCATCTCAACTACTGGTACTC		59	4343848	4343930	GAGAAGACAATCTGAAATGGC		59	NA	
Drosophila melanogaster	50	tutl	FBgn0010473	FBtr0089269,FBtr0089270,FBtr0089268,FBtr0089271	2	4	4	174	2L	4295611	4299075	CAATATTCCAGAAGACGCC		58	4303359	4303377	CGGATAGCTCTCATACCAG		58	NA	
Drosophila melanogaster	50	tim	FBgn0014396	FBtr0114526,FBtr0077564,FBtr0077567,FBtr0114527,FBtr0077566	1	5	8	80	2L	3500053	3500071	CAGAATTCCGGACTACTGG		59	3499754	3500009	TTGAGGTTGAGTTTGTCCA		58	NA	
Drosophila melanogaster	50	msl-2	FBgn0005616	FBtr0077570	1	1	2	80	2L	3463757	3463776	CCGCTAAATAATTTGCAGCA		59	3463644	3463716	GATATTGAAGCCCTGGTACTC		59	NA	
Drosophila melanogaster	50	CG15406	FBgn0031517	FBtr0077580	2	1	1	109	2L	3310197	3310634	GACAATAGCATTCGAGGTC		57	3310707	3310725	CAGGGTATCACGTGATAGG		58	NA	
Drosophila melanogaster	50	robl22E	FBgn0028570	FBtr0077800	2	1	1	84	2L	2290567	2290585	AGTCCATGAAGAACGTCAC		59	2290501	2290519	AGTGTCAGAGTGTAGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17012	FBgn0031406	FBtr0077804	2	1	1	60	2L	2254315	2254333	TAACTGGATCCTTAGTGCC		58	2254273	2254291	TTACACATTTGTAGCGGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aop	FBgn0000097	FBtr0077851,FBtr0077850	2	2	2	126	2L	2159242	2159326	CTGAGCCCAATACAAATGG		58	2159134	2159152	TCGACGATCTTGAAGACTC		58	NA	
Drosophila melanogaster	50	CG11911	FBgn0031249	FBtr0078098	3	1	1	60	2L	320443	320461	CCATTTACACCAAGGTGTC		58	320401	320422	TAGTAGGCACTCTGAATATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Plc21C	FBgn0004611	FBtr0078047,FBtr0078048,FBtr0078051,FBtr0078050	2	4	5	137	2L	344368	344386	CGAAAGAAGCATGACAAGG		59	344484	344570	CGGAGAAAGACAATTAAGACTC		58	NA	
Drosophila melanogaster	50	Nhe1	FBgn0026787	FBtr0078161	2	1	1	95	2L	105329	105401	ACCTATCCACTGTTACCCA		59	105252	105271	TTGCTAATCCCAGATAAGCA		58	NA	
Drosophila melanogaster	50	CG31973	FBgn0051973	FBtr0113415,FBtr0078163,FBtr0078164	1	3	4	91	2L	28236	28747	GAAGAGATATTCCTGGCGAG		59	28164	28185	CTGCTTGTTTAGGTCATTAACG		59	NA	
Drosophila melanogaster	50	l(2)gl	FBgn0002121	FBtr0078166,FBtr0078171,FBtr0078170,FBtr0078167,FBtr0078168,FBtr0078169	1	6	6	80	2L	14976	14996	ATTATGTGCCTTATGGACCTG		59	14858	14937	CAATTACATCGTTGGATCTTCG		59	NA	
Drosophila melanogaster	50	CG15459	FBgn0031108	FBtr0077329	2	1	1	190	X	20284592	20284610	GGAGCTATAGGCAGAACAC		59	20284251	20284269	GTACACGATGAACAACAGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Or19b	FBgn0062565	FBtr0070003	3	1	1	80	X	19989617	19989635	GCCAGATTCCAATGATCCT		59	19989679	19989750	ACGCTCCCTTAATCATCAC		59	NA	Nonspecific
Drosophila melanogaster	50	CG15042	FBgn0030937	FBtr0074619	1	1	1	60	X	18421127	18421148	TTACATAAACATCCTAGAGGGC		59	18421088	18421107	GATATCGCTTCGTAGTACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33252	FBgn0053252	FBtr0074346	3	1	1	140	X	16790637	16790731	CATGGTATTTATCAAGCCGC		59	16790516	16790534	TCCGAAAGGATCATCTTGC		59	NA	
Drosophila melanogaster	50	CG9125	FBgn0030793	FBtr0074352	3	1	1	289	X	16696485	16696591	GTTGACTTCAAAGATTGCAG		57	16696215	16696234	TTAAGATTGCGCAGAAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CanA-14F	FBgn0030758	FBtr0074292,FBtr0074293	3	2	2	67	X	16461493	16461511	ACCAAGTATCTGTTCCTGG		58	16461444	16461462	AAATACAGTACGCACTCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TH1	FBgn0010416	FBtr0074305	3	1	1	193	X	16283900	16283987	TTGCATCAAATATCCTGTGG		58	16283726	16283744	GCTTGGACTCAAATAAGCG		59	NA	
Drosophila melanogaster	50	nonA	FBgn0004227	FBtr0074232	3	1	3	76	X	16259644	16259662	TGATTGGAAACAATGCTGC		59	16260960	16260981	GCCTTGGTTCATATTGTTAACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13957	FBgn0030739	FBtr0074224	1	1	1	80	X	16210368	16210454	ATAATTGACCAGGGCATAGAC		59	16210495	16210514	GTTCATGTTGTAGGCATACG		58	NA	
Drosophila melanogaster	50	Ac13E	FBgn0022710	FBtr0074073,FBtr0100142	2	2	2	109	X	15411715	15413955	GATACAGGTTCACCCTCTC		58	15411624	15411642	AAAGGAGCTAGAGATTGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	l(1)G0168	FBgn0027287	FBtr0074042,FBtr0074043	1	2	2	83	X	15401624	15403766	AAGTGGAGAGCCTAAAGGA		59	15403813	15403831	TGTCAATCTTGTCCGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5662	FBgn0030620	FBtr0073999	3	1	1	63	X	15104879	15104897	GTGGAGAATGTCTTCACCC		59	15104921	15104942	GTTGATAGTTTACCTCATCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32602	FBgn0052602	FBtr0073911	3	1	1	79	X	14175320	14175339	TACAACTCTGAAGCCAACTG		59	14175381	14175619	CCGTAGTTCCACTAGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33174	FBgn0053174	FBtr0073826,FBtr0073825	2	2	2	81	X	13698016	13698034	GTCTCAATCAAATGGAGGC		58	13698079	13698169	GAAATGGTCTTCCACTTGG		58	NA	
Drosophila melanogaster	50	CG1764	FBgn0030467	FBtr0073796	3	1	1	90	X	13189128	13189207	TTCCAGAAGCCTACAAGAC		58	13189056	13189074	AGACCACTGGAATATTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	hep	FBgn0010303	FBtr0073749,FBtr0073747	3	2	3	239	X	12975691	12975709	GTCTAGATCACCGGAACAG		59	12975076	12975094	GCTGTGGAATTCAATTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	m	FBgn0002577	FBtr0073555	1	1	1	80	X	11661068	11661088	CCTGTTAGTGGAATTGTACCA		59	11661130	11661216	CATATCGAATTCGCCTCGA		59	NA	
Drosophila melanogaster	50	CG2533	FBgn0030319	FBtr0073537	1	1	1	60	X	11497543	11497561	GTCATTCAACTGGAAGAGC		58	11497501	11497519	CCTTCTGATCCGTTAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr10a	FBgn0045502	FBtr0073549	1	1	1	98	X	11307683	11308544	GACCAGGGAGATAGAACAC		58	11307603	11307621	ATCAGGTACACCAATCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15250	FBgn0030165	FBtr0071428	3	1	1	80	X	9861076	9861096	GGTCACCAATATCTCAAAGTC		58	9860856	9860874	TTAAAGAAGAGCACGAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ser7	FBgn0019929	FBtr0071387	2	1	1	196	X	9759423	9759503	ATTTGGCAAAGCTATCATGC		59	9760024	9760044	CCAATGGCGGTATAATATTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16892	FBgn0030122	FBtr0071319	3	1	1	146	X	9168710	9168964	GAGTCTGCTATCCTCTTCG		58	9169073	9169092	GTGACTACCAGATAATTGCC		58	NA	
Drosophila melanogaster	50	Tom40	FBgn0016041	FBtr0071074,FBtr0071073	2	2	2	126	X	7632816	7632935	GAATCTGGTCTTCAGAGGC		59	7633025	7633043	AAAGTTGTTCTTCACGTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9650	FBgn0029939	FBtr0071044,FBtr0112958,FBtr0071043,FBtr0071045,FBtr0112959,FBtr0112957	3	6	6	64	X	7133121	7133139	AGAACTGCAACATGTTCCA		59	7133167	7133185	ATTGAAGAGCGGTACTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0148	FBgn0028360	FBtr0070950	1	1	1	90	X	6549438	6549456	GAATTCAATGGAGCTGCAG		59	6549509	6549597	GATCATTGATGGCTTCTTCG		59	NA	Nonspecific
Drosophila melanogaster	50	Lag1	FBgn0040918	FBtr0070937	1	1	2	80	X	6160490	6160509	ACTACAAGGACCTCATATGG		58	6153747	6160447	ATATCCAGAAACGCTCCAG		59	NA	
Drosophila melanogaster	50	CG5921	FBgn0029835	FBtr0070870	1	1	2	155	X	5956030	5956048	TTATGGACGAATTCAAGCG		58	5956167	5956812	CAATTGAAGTGCTTGACCT		58	NA	Nonspecific
Drosophila melanogaster	50	CG12236	FBgn0029822	FBtr0070825,FBtr0070826	1	2	2	61	X	5803828	5803846	ATGGAGGAGAAGTACCAGG		59	5803871	5803951	AATCGGGTCATCTCAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15784	FBgn0029766	FBtr0070777	3	1	1	71	X	5326029	5326047	CTTTGGTCCACATCATGGT		59	5326082	5326100	GGAACGTCAAAGAATGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GlcAT-I	FBgn0066114	FBtr0070644	1	1	1	62	X	4025520	4025603	CTAACCAGACTATCTCACCTC		58	4025627	4025645	GTCCTCCACAATGATCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33218	FBgn0053218	FBtr0070400	1	1	1	74	X	2224502	2224520	AACCTCAAATTCCGAAGGT		59	2224558	2224576	TTGTTAGCTTCGATGGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp4ae1	FBgn0015036	FBtr0070388	3	1	1	127	X	2074381	2074461	TTTGGTTATAGATGAGGGCT		58	2074551	2074569	CTTCTCCTAGATGCCTCTC		58	NA	
Drosophila melanogaster	50	CG34320	FBgn0085349	FBtr0112522	1	1	1	247	X	1057998	1058017	TTCATCAAGTTACTCCTCCT		57	1057666	1057685	TCAATGTTCATCATATCGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40930	FBgn0085538	FBtr0113951	3	1	1	60	U	7128800	7128818	AAGACCTCAAGGTTTGGAG		59	7128840	7128860	GCTACTTAACTTCCAATGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41562	FBgn0085693	FBtr0114142	1	1	1	106	U	5467316	5467334	TATCCAACATACCCAAGCA		58	5467404	5467495	ATGATGCTTACTTGACTGC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17878	FBgn0039947	FBtr0113763	1	1	1	60	U	2295848	2295868	CCACAAAGTTGGAAATACTCG		59	2295808	2295827	TGTTATGGTAAACTCGACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sphinx	FBgn0083990	FBtr0111044	2	1	3	60	4	996136	996157	CCACTTTAAGATTCCTGTAGTG		58	996176	997399	TTTACACAAGATGGAGAAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bxd	FBgn0020556	FBtr0083341	2	1	4	271	3R	12579511	12598585	GAACAACATAGCACTCACAC		59	12568373	12568391	ATTAAGCCATCAAGTCGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	sip3	FBgn0039875	FBtr0085842	1	1	1	95	3R	27598372	27598390	TACATCACCAAATCGAACG		57	27598511	27598584	CAGGAAGATCTTGCTTAGC		57	NA	
Drosophila melanogaster	50	hdc	FBgn0010113	FBtr0085620,FBtr0085621,FBtr0085619	2	3	3	82	3R	26184088	26184106	ATTCGATCGCTATCCACTG		59	26184151	26185704	CGTATTTAACCTCGATGCAG		58	NA	
Drosophila melanogaster	50	CG7928	FBgn0039740	FBtr0085600	2	1	1	60	3R	25861845	25861864	TACCATGAGTGACTTTGACG		59	25861804	25861824	GCCATCGGATATTATGTACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15510	FBgn0039707	FBtr0085487	3	1	1	75	3R	25662918	25662936	AGACGGCAACTAGATTGTG		59	25662975	25663048	GTAACAATCCAAAGTGGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14508	FBgn0039651	FBtr0085406	2	1	1	60	3R	25028793	25028814	TGTACTTCAATCCGTACTTCTC		59	25028754	25028772	TCATTGTCAACTACCTTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11900	FBgn0039650	FBtr0085407	2	1	1	66	3R	25027716	25027734	CCTAAGGGATCTGCAAGTC		59	25027607	25027625	AACGAAGTACTGATCACGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14065	FBgn0039579	FBtr0085280	2	1	1	151	3R	24160032	24160050	TGAAGAGCTTCAAGTCGTG		59	24159899	24159917	CAATTCCGATGAGTTCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0114372	2	1	12	106	3R	22892471	22892489	CAGTATCACAGCCTGATCC		59	22892166	22892339	CGATACTTGGTATCCGATGG		59	NA	
Drosophila melanogaster	50	CG6403	FBgn0039453	FBtr0085044	1	1	1	70	3R	22561679	22561697	GTTCTACTTCTGCCTGGAC		59	22561627	22561648	CGTTGTTCACGAAATAGTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5484	FBgn0039450	FBtr0085037,FBtr0085039,FBtr0085038	3	3	3	107	3R	22544579	22544653	TATGCATAAGGATTGGTCCC		59	22544723	22544741	TATGTGATGTAGCCCATGG		58	NA	
Drosophila melanogaster	50	CG14237	FBgn0039428	FBtr0085013	2	1	1	77	3R	22282018	22282555	CAAATACGGAGTCGACCTC		59	22282596	22282614	GTTGTCCTGTCTTCATGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5768	FBgn0039198	FBtr0110867,FBtr0084620	1	2	2	112	3R	20212173	20212191	TATAATGGACGTGACTGCA		58	20212017	20212097	TTTGGCAAGCTGAATATGG		58	NA	
Drosophila melanogaster	50	CHORD	FBgn0029503	FBtr0084554	3	1	1	127	3R	20013024	20013044	AATACGATTACAGTCAGAGCG		59	20013133	20013209	GCTCACATTCACAATTCCG		59	NA	
Drosophila melanogaster	50	CHORD	FBgn0029503	FBtr0084554	1	1	1	125	3R	20012858	20012945	AAATGGGTCAAGGAGAACG		59	20013034	20013052	CTCTATCACGCTCTGACTG		59	NA	
Drosophila melanogaster	50	CG13607	FBgn0039151	FBtr0084585	3	1	1	81	3R	19940699	19940717	ATCACCACTATGTGACCTG		58	19940636	19940654	TTGGTATGATGCTCAACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13604	FBgn0039137	FBtr0084509	3	1	4	104	3R	19817570	19817589	GATACCTATGAGCAGTTGGA		58	19816967	19817503	GAGTGAGATGGATCGACTG		59	NA	
Drosophila melanogaster	50	CG12499	FBgn0038968	FBtr0084295	2	1	1	100	3R	18271800	18271871	CTTCATAACAGAACTGCGAC		58	18271719	18271737	CTAACTCCAAGGGCTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pinta	FBgn0038966	FBtr0084297	3	1	1	124	3R	18249665	18249683	AAGCTCATCAAGAGATCCG		59	18249502	18249580	GGCGTCATGAATATTCTAAAGG		59	NA	
Drosophila melanogaster	50	CG13850	FBgn0038961	FBtr0084231	3	1	1	99	3R	18234855	18234873	AAATGGAATGCTAGATGCC		57	18234721	18234792	GCACAGTGCATCTATAAGG		57	NA	
Drosophila melanogaster	50	lbe	FBgn0011278	FBtr0084091	3	1	1	114	3R	17268106	17270809	AAGATAAATCCCACTTGGAC		57	17268011	17268030	TAGAGAAATCGCTTCTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3337	FBgn0038871	FBtr0084107	3	1	1	60	3R	17048671	17048690	GCACAACACCAAGATTATCG		59	17048630	17048648	AATCTTCACGTGCTCTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17282	FBgn0038857	FBtr0084033	1	1	1	60	3R	16944384	16944402	TACGGTGGAATTCAGTGTC		59	16944342	16944361	ATATTTGCTAGGTCGTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5697	FBgn0038846	FBtr0084001	2	1	1	161	3R	16842141	16842233	AACTGCTGACTATTCCTACG		59	16842357	16842375	CAGACACTGTCGGAATAGG		59	NA	
Drosophila melanogaster	50	Nep4	FBgn0038818	FBtr0083936,FBtr0083937	2	2	2	140	3R	16479556	16479574	TACATAAGTGGTGGACGGA		59	16479272	16479452	CTGCGATATTCTCACCCTG		59	NA	
Drosophila melanogaster	50	Stat92E	FBgn0016917	FBtr0089484,FBtr0089486,FBtr0089485,FBtr0089487,FBtr0100457	1	5	5	80	3R	16366166	16366254	ATAATGTCAGAGATCCAGTCG		59	16366106	16366124	CGATGATTGACCGGATAGG		59	NA	
Drosophila melanogaster	50	CG10881	FBgn0038796	FBtr0083885	2	1	1	66	3R	16234657	16234675	CATGACCGAGACTGATCTC		59	16234705	16234723	CGCCAAATACATCTTGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5060	FBgn0038780	FBtr0113251,FBtr0083871	3	2	2	201	3R	16116118	16116136	TTCAAGAAGGGAGACATCG		58	16116301	16116697	TTGATCGACTGTCACTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11626	FBgn0038705	FBtr0113247	3	1	1	142	3R	15235692	15235769	AGTTATAGTGCTTCTATACCGC		59	15235872	15235890	GATGAGTAGCCAAAGTCCT		58	NA	
Drosophila melanogaster	50	CG5316	FBgn0038704	FBtr0083758	3	1	3	177	3R	15229535	15229623	CATCTTTCACTTGAACCGG		58	15229764	15229782	GCTTGTTGATACGAAGTCC		58	NA	
Drosophila melanogaster	50	CG12269	FBgn0038665	FBtr0083722	2	1	1	89	3R	14804290	14804383	ATCTCATCAAGAGCATGGC		59	14804219	14804237	AGTAGAAGTCCTCATCGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gwl	FBgn0004461	FBtr0083674	1	1	1	90	3R	14575312	14575330	TTCTACGAGTTCATGACCG		59	14575381	14575472	GCCATTCGATGTTCTTATTCAG		59	NA	
Drosophila melanogaster	50	CG7714	FBgn0038645	FBtr0083686	3	1	1	128	3R	14551971	14552072	GAAAGCCGTGATCTTTGTG		59	14551861	14551880	AACTTGAATCCTGACTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7709	FBgn0038642	FBtr0083687	2	1	1	164	3R	14518346	14518364	GGTGGCTTTGTCTTTAGGT		59	14516620	14516638	GTTGATGAGCTTCGAATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31231	FBgn0051231	FBtr0083662	3	1	1	133	3R	14492680	14492698	ACTTGAACCTTCACAACCT		58	14492863	14492945	TTCCTCTAGTTGCTTGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7794	FBgn0038565	FBtr0083540	2	1	1	96	3R	13850105	13850189	TATCCTTCGCCTTCAATCTC		59	13850247	13850266	CAATAAACGATACATCGGCG		59	NA	
Drosophila melanogaster	50	CG7379	FBgn0038546	FBtr0083529	3	1	1	153	3R	13622781	13622799	GTTGGTGGCAATAATTCCG		59	13622585	13622665	CAAAGGAGATCTGATTGCAG		58	NA	
Drosophila melanogaster	50	beat-IIb	FBgn0038494	FBtr0083411	3	1	1	191	3R	13064762	13065211	TGCAAGTTGTGGAATTTCC		58	13059233	13059251	CAACCGTTCGAATGTACTG		58	NA	
Drosophila melanogaster	50	CG9632	FBgn0038377	FBtr0083186	1	1	2	74	3R	11686256	11686274	AAGAAGCTCAAGAGAAGGC		59	11686312	11686498	GACCACCTCAATATCGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9269	FBgn0038161	FBtr0082794	2	1	1	62	3R	9442012	9442030	CCTACGGCAATCTGTATGG		59	9442055	9442074	AAGGACGACCATAATATCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6359	FBgn0038065	FBtr0082641	1	1	1	82	3R	8454633	8454651	TAAAGGAGTCCAGTGTCAG		58	8454697	8454952	CACCACAATCTTGCTATCC		58	NA	
Drosophila melanogaster	50	Dip-C	FBgn0000455	FBtr0082597	2	1	1	60	3R	8238220	8238238	GACATAACCTGCACATTCC		58	8238178	8238197	TGTAGATGAACTTCTGGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14714	FBgn0037929	FBtr0082422,FBtr0113222	1	2	3	78	3R	7498790	7498808	CAGCCACGAGATTAATGGA		59	7498953	7498971	AGAACAGTGAACGGTTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082457	2	1	6	67	3R	7417027	7417239	GAAGCTAAAGATCCGAGAGG		59	7416979	7416997	AATACTCGTTGGCTACGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9399	FBgn0037715	FBtr0082109	3	1	2	90	3R	5399132	5399150	TGTACAACGGGATGATTGG		59	5398996	5399078	AATATCGTCTTGGGACCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG8121	FBgn0037680	FBtr0082017,FBtr0082019,FBtr0082018	1	3	3	101	3R	5161887	5161905	TATGCTCATTGTCTTTGCC		58	5161970	5162218	TTCCTCTCGTATTCCTTGC		59	NA	
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0089785,FBtr0112823	3	2	8	143	3R	4668550	4690515	AATTCTTTGGTGATCGAACC		58	4668426	4668444	CATCGCTAACTGCTATCGA		59	NA	
Drosophila melanogaster	50	CG8145	FBgn0037617	FBtr0081911	1	1	1	81	3R	4550088	4550177	GTTGTAAGGAAGTATAGTTGCG		59	4550219	4550237	TATTGGAGATGAAGTGCGT		58	NA	
Drosophila melanogaster	50	CG31454	FBgn0051454	FBtr0081870	3	1	1	136	3R	4348748	4348820	AAGATGTCTTCATGTGGCT		58	4348917	4348938	GACTTCAACATCAGATACAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Arf84F	FBgn0004908	FBtr0081838	2	1	1	81	3R	4167320	4167340	CTAGTTCTCTGCAACAAACAG		59	4167377	4167459	TGATATCCTCTAGGTGTAGTATCTC		59	NA	
Drosophila melanogaster	50	CG31464	FBgn0051464	FBtr0081830	1	1	1	60	3R	4117647	4117665	CAAGTTGCCTCTTCTACCA		59	4117689	4117707	TCAATCTGCGTAAAGAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpA-70	FBgn0010173	FBtr0081867	2	1	1	183	3R	4088630	4088648	GATTACTTCCAGTGCAAGG		58	4088386	4088483	CGATGCTCATGTTGATCAG		58	NA	
Drosophila melanogaster	50	CG9667	FBgn0037550	FBtr0081815	3	1	1	268	3R	3951877	3951958	AAGGCAATGACAACTTTGG		58	3951566	3951585	CCACCCAATGAGGATATCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10928	FBgn0040522	FBtr0081746	1	1	1	63	3R	3635486	3635504	ATTCGATTTAACTCGCTCG		57	3635531	3635549	GTAAATCCAACACGAACGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10068	FBgn0037473	FBtr0081611	3	1	1	60	3R	2953473	2953494	CTTTATAAAGTGGTTCCTGCAC		59	2953434	2953452	ATAGCAAATCCTCTGGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1943	FBgn0037468	FBtr0081637,FBtr0081636,FBtr0081635	1	3	3	63	3R	2902727	2902745	CAATATCTTCTCGGAGCCC		59	2902771	2902790	GTTCTGTTGGTTGTACTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10277	FBgn0037442	FBtr0113198,FBtr0081722,FBtr0081720,FBtr0081721	1	4	4	88	3R	2211842	2211860	AACAAGTACGACACCTGTG		59	2211912	2212067	GTGTGATAGGGATGTGAGC		59	NA	
Drosophila melanogaster	50	Gasp	FBgn0026077	FBtr0112922	2	1	2	83	3R	1920000	1920018	GCACAGTGTTCAAGATTGG		59	1915402	1919953	CATAGTAATCCTCGCACCC		59	NA	
Drosophila melanogaster	50	CG9776	FBgn0027866	FBtr0078955	3	1	2	96	3R	153927	153945	CTTCAGACAGTGAGAAGCT		58	153730	153867	TACAGAGCATATTGTGCCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG14451	FBgn0037183	FBtr0078538	1	1	1	60	3L	22714632	22714652	CAGAAGGATATAAGGGACACG		59	22714592	22714612	GATGGGTGTCAACATATTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AP-2	FBgn0023417	FBtr0078419,FBtr0078418	1	2	2	221	3L	21602979	21604253	GACATGTCACCCAATTGTC		58	21604438	21605100	TCATGCTCTTTATGAGCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12983	FBgn0037040	FBtr0114616	2	1	4	95	3L	20959293	20959312	ACCATAGAAAGGGTACAGAG		58	20958844	20959235	ATTACGGGTAGCCTTATCC		58	NA	
Drosophila melanogaster	50	CG5078	FBgn0037005	FBtr0078208	1	1	1	60	3L	20500293	20500312	TTGATAGGCAGTGTAAGTGG		59	20500332	20500353	AGATAGCTCCAATCATAAAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5910	FBgn0036993	FBtr0078195	2	1	1	81	3L	20439488	20439852	GAAATTTAACGGCTCAAGAGG		59	20439895	20439913	GCCTAGGCAATACTTTGGT		59	NA	
Drosophila melanogaster	50	Nca	FBgn0013303	FBtr0074902	1	1	1	164	3L	19986372	19986393	GCCTCAGTAGGTAAATAATGCT		59	19989876	19989963	TTGAATCTCAGCGTCTGTG		59	NA	InUTR
Drosophila melanogaster	50	ash1	FBgn0005386	FBtr0074970	3	1	1	171	3L	19584794	19584814	GACTGAATTAGACGTAGGAGC		59	19584573	19584664	CTTAAGCATCTGTTTATTGGGC		59	NA	
Drosophila melanogaster	50	CG14085	FBgn0036859	FBtr0074992	3	1	1	81	3L	19266241	19266320	ATGAGCAGGCTAAAGATCTG		59	19266364	19266382	TTGTCATCCTCGTCAATGG		59	NA	
Drosophila melanogaster	50	Msi	FBgn0043025	FBtr0110847,FBtr0110846	3	2	3	96	3L	17749107	17749128	CTGGAGTGAATTTATCTTCACC		58	17748904	17749052	CAGATCGTACATATTTGGCAG		58	NA	
Drosophila melanogaster	50	CG32158	FBgn0052158	FBtr0075402,FBtr0075406,FBtr0075407,FBtr0113426	1	4	7	103	3L	16501641	16501659	ATGTGAACGGTAGCATCAG		59	16501157	16501574	CAGGAAGGTATTGTAGGCC		59	NA	
Drosophila melanogaster	50	CG13058	FBgn0036610	FBtr0075372	2	1	1	65	3L	16322289	16322307	GGTGGAGAGGTTCTTTCAG		59	16322336	16322354	GTCTGTCCAGAGATGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33984	FBgn0053984	FBtr0100029	2	1	1	60	3L	15520355	15520374	TTAAGACCCATAGGAACCTC		58	15520314	15520334	ATGTAGTATTGACTGGCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5392	FBgn0036463	FBtr0075671	3	1	1	70	3L	15004342	15004360	TAGTGAGGCAATCGATAGC		58	15001088	15004309	TATCATATGATTCTCCGGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG10191	FBgn0036354	FBtr0075863	3	1	1	88	3L	13381874	13381892	CAATGACCTTAGTATCCGC		57	13381804	13381822	AATGTTTACTGTCGAGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14110	FBgn0036352	FBtr0075844	2	1	1	106	3L	13377974	13378045	GTTGTTCTCACCATTCAAGC		59	13378114	13378132	AGCTCTTCATCTTTACGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33262	FBgn0053262	FBtr0075826	1	1	1	61	3L	13129446	13129464	ACACTCCAGATCTAAACGT		57	13129489	13129564	TAAACTGGTGCCTTGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17144	FBgn0036267	FBtr0076015	2	1	1	64	3L	12201017	12202407	CGTAATTCCAATAGTCTAGCTC		58	12200974	12200992	GGAATGTCCATTTGGACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11560	FBgn0036249	FBtr0075993	1	1	1	98	3L	12113597	12113615	GTGAGCAGTTCTATGAGGT		58	12113677	12113761	ATTTCAGAGTCTGCTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6024	FBgn0036202	FBtr0113164,FBtr0113165,FBtr0113166	3	3	3	91	3L	11752784	11752802	GCTAATCCTCATCGGACTC		59	11737115	11752729	GCGACTGCATGTAATAGTG		58	NA	
Drosophila melanogaster	50	CG6216	FBgn0036139	FBtr0076220,FBtr0076221	2	2	2	113	3L	11143173	11143247	AAATGTGTTGTGGCAAGAC		59	11143078	11143097	TTAATTTGGCCTTGTTGGAG		58	NA	
Drosophila melanogaster	50	CG33493	FBgn0053493	FBtr0089606	2	1	1	80	3L	10685990	10686008	AACACATGGAACACAATCG		58	10685928	10685948	GCATTGGTCTTATAGTCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13314	FBgn0035949	FBtr0076518	1	1	1	60	3L	8976054	8976072	TACAATGATCCCGTGATCG		59	8976096	8976114	TTTCCTTCTTCGTGAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6776	FBgn0035904	FBtr0076622	1	1	1	76	3L	8512064	8512612	GTAAACATTTGGCCAAAGG		57	8512652	8512670	GAACCTCATGGAGTACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32354	FBgn0052354	FBtr0076662	3	1	1	137	3L	8409963	8409982	AACATATACTCTTCGCTGTG		57	8409789	8409807	ATTGAAGTCCTTGCAAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7066	FBgn0035869	FBtr0076707	3	1	1	95	3L	8298066	8298137	AAAGTGGTCTAGATGCGAC		59	8298196	8298214	AAGAAAGCTCCCTTCTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ets65A	FBgn0005658	FBtr0077054,FBtr0077055	1	2	2	93	3L	6105510	6107400	CACAATCGCAAGGTTACAG		59	6109057	6109076	GGTCCGAACATTTGATATGG		58	NA	
Drosophila melanogaster	50	Cralbp	FBgn0035636	FBtr0077117	1	1	1	60	3L	5776874	5776894	TCAGTTCCAAGATGAAGAACC		59	5776834	5776853	CTCTTCATCAGCTCCTTCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubp64E	FBgn0016756	FBtr0077096,FBtr0077095,FBtr0077097	3	3	3	99	3L	5751686	5751765	GTGACTAGTATCACCCAAGAG		59	5751826	5751844	ACATGTATGCATTGGTGCT		59	NA	
Drosophila melanogaster	50	mthl2	FBgn0035623	FBtr0077088,FBtr0077087	2	2	2	99	3L	5598876	5598894	TCTGTTACATGATGTGCCT		58	5598957	5599035	TATCCCAAGAAACCTGCTG		59	NA	
Drosophila melanogaster	50	CG32252	FBgn0052252	FBtr0073251	2	1	1	221	3L	4222349	4222418	GAAGAAGTCTGCTCATGGT		59	4222146	4222164	ACCACAATTCTGATTGCTC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12182	FBgn0028504	FBtr0072955	1	1	1	97	3L	2597134	2597203	CTTTGTGGAGATCTCCCTC		59	2597055	2597073	ACTCGTAGAGTTCTTGCAG		59	NA	
Drosophila melanogaster	50	CG16758	FBgn0035348	FBtr0072963	1	1	4	121	3L	2500450	2501077	GAAGACACGTATCCCTATGAG		59	2500349	2500367	ATCATATCGGCCAATGAGC		59	NA	
Drosophila melanogaster	50	Aprt	FBgn0000109	FBtr0089421,FBtr0089420	1	2	2	80	3L	1884237	1884331	TACGGTATTGACACCTTTGAG		59	1884177	1884195	GGCTAGTAGATCGTCAACG		59	NA	
Drosophila melanogaster	50	CG7971	FBgn0035253	FBtr0113123,FBtr0072807,FBtr0072806,FBtr0100219	3	4	5	233	3L	1659859	1659877	AGAATGTCCGAAAGAAGGC		59	1658334	1658352	ATGATCTCGTATCCTTGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	snoRNA:Or-aca1	FBgn0082925	FBtr0113530	2	1	1	60	2R	18495066	18495084	TGTTGGAACTTATAGCCGT		58	18495108	18495126	GCGACATGCACTTAATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	itp	FBgn0035023	FBtr0110792	1	1	2	84	2R	20443078	20443529	ATACACCGATTATGCAAGG		57	20443577	20443595	TCTCTTCATCGTCGATCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13563	FBgn0034966	FBtr0113117	1	1	1	143	2R	19943279	19943297	TACTGGTACAACGCTAGGA		59	19943404	19943485	GAAGATGCTCCTCTTCGAG		59	NA	
Drosophila melanogaster	50	CG5339	FBgn0034925	FBtr0072220	1	1	1	89	2R	19785292	19785310	CATACTGTCCGAGGAACAG		59	19785164	19785239	ATATCCAGCAACGTGACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gr59a	FBgn0045483	FBtr0071964	1	1	1	65	2R	18969012	18969091	GCATGTCCAATGAGTTGAG		58	18969120	18969138	AGACCAACAGATCCAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34209	FBgn0085238	FBtr0112402	3	1	1	217	2R	18928887	18929136	TCATGAATGGACTTGGATCC		59	18924319	18924337	TGGGATTGTACGATGTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13501	FBgn0034684	FBtr0071804	1	1	1	60	2R	17947798	17947817	TCTAAATCCACTGAATGCCC		59	17947693	17947778	CTTCAACTTTCTAACAAGGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	PpN58A	FBgn0025573	FBtr0071734	3	1	1	60	2R	17769601	17769619	AGTCCATCGAAACATTGAC		57	17769559	17769578	TAGAACTTGGTCGGATACCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sdc	FBgn0010415	FBtr0071707,FBtr0071706,FBtr0071705	2	3	3	143	2R	17299915	17367606	CTCAAGATCAGAAATCGGTG		58	17286794	17286815	GATCTTTCTCTAGATCTTCGTG		57	NA	
Drosophila melanogaster	50	CG30391	FBgn0050391	FBtr0071621	2	1	1	61	2R	17153595	17153613	AATTCTGCTGGTGATCGAG		59	17153552	17153571	CTAGCTCCTTCCTATAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL54	FBgn0034579	FBtr0071533	2	1	1	61	2R	16948710	16948788	AAATCAAACCGGATTCGGA		59	16948811	16948831	AACTATGCCTTCCGTATTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3216	FBgn0034568	FBtr0071551,FBtr0071552	3	2	2	81	2R	16875160	16875242	CATAATGAAAGGCTTCTGTGAG		59	16875100	16875119	GAGACTCTCGAGATTGTTGG		59	NA	
Drosophila melanogaster	50	exu	FBgn0000615	FBtr0086243,FBtr0086242,FBtr0086244	2	3	3	93	2R	16557556	16557574	GAATCTGAATCCAGCTGCT		59	16557398	16557502	GATCTTATAAGTCTGCATCGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ate1	FBgn0025720	FBtr0086319,FBtr0086318,FBtr0086317	2	3	3	105	2R	16142991	16143009	TACATACACTCCTGTCCCA		59	16142845	16142922	CACGAATAACATCGGTGAG		58	NA	
Drosophila melanogaster	50	CG33958	FBgn0053958	FBtr0114576,FBtr0099994	2	2	2	80	2R	14074503	14074521	TCCATTAATCGTGGATTGC		57	14074345	14074459	AACTAGGTATCGCCATACG		58	NA	
Drosophila melanogaster	50	CG6262	FBgn0034121	FBtr0087154,FBtr0100615,FBtr0087152	1	3	5	80	2R	12247595	12247614	TCGATATGTTCACCAATTGC		58	12247656	12247763	GATCATTGAAGTGCTTCTCG		59	NA	
Drosophila melanogaster	50	CG15710	FBgn0034120	FBtr0087169	3	1	1	62	2R	12235319	12235338	TTAATCTGTGATCGTTGTGG		57	12235276	12235294	TTTCAGATGACGGTGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33465	FBgn0053465	FBtr0100534	2	1	1	90	2R	11707083	11707157	AAACTCAGATCTTGTCAAGC		58	11707012	11707030	ATCATTGGTGGTCTCATCC		59	NA	
Drosophila melanogaster	50	CG30464	FBgn0050464	FBtr0087330	1	1	1	60	2R	11394381	11394401	GAGGAGAACTATCAAACTCTG		57	11394421	11394441	CATTTAGAAGAATCAGACGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12858	FBgn0033958	FBtr0087476	3	1	1	116	2R	10631362	10631380	CATGAACTACGGCATTGAG		58	10631202	10631283	GCCTCTGGATATAGATTGGG		59	NA	
Drosophila melanogaster	50	Arc1	FBgn0033926	FBtr0087560	3	1	1	169	2R	10247467	10247485	TAGAAGGTATCAGCGACGA		59	10247316	10247334	CATGTAGATCTGGTAGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33798	FBgn0053798	FBtr0091802	2	1	1	123	2R	8881778	8881796	GTTACTGTAGATGGCTGCA		59	8881883	8881972	TTATGTCATGGTCGTAGGG		58	NA	
Drosophila melanogaster	50	Amph	FBgn0027356	FBtr0087828	3	1	1	98	2R	8497299	8497318	AGTAGTTAATAGGCACAGCG		59	8497379	8498099	TCAGCAGTATTGGCATCAG		59	NA	
Drosophila melanogaster	50	CG8525	FBgn0033735	FBtr0087927	3	1	1	259	2R	8313649	8313667	GGATAAGGTGGCTATTGCA		59	8313890	8313970	AAACATTATCCATGGTGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tsp47F	FBgn0033629	FBtr0088151,FBtr0088152	3	2	2	112	2R	7265620	7265638	GGGCCTGATCATATTCCTG		59	7265467	7265485	GCTCCACAATGAAGATGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Syx6	FBgn0037084	FBtr0088104,FBtr0088103	1	2	3	128	2R	7108119	7108443	CACTATCAGCATCGTTGAG		57	7108535	7108553	TTCAGGCTCATCTTATCCT		57	NA	InUTR
Drosophila melanogaster	50	CG13230	FBgn0040764	FBtr0088204	1	1	1	89	2R	7042471	7042489	CATCTGTCTGGTCCTTGTC		59	7042541	7042640	TCGATTATCTTCTGGATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12128	FBgn0033473	FBtr0088393,FBtr0088394	2	2	2	70	2R	5915094	5915112	GACAAGGCAATAGAACCAG		58	5915146	5915228	TGCTTTCTACAGCTCTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shrb	FBgn0086656	FBtr0088623	1	1	1	88	2R	5030496	5030572	TCAGAATATGGACGTGGAC		58	5030426	5030444	AAATGGCATCGGAAATCTC		58	NA	Nonspecific
Drosophila melanogaster	50	CG8058	FBgn0033382	FBtr0088580	2	1	1	68	2R	5021253	5021272	ATTACCTTATCCAGGTGGTC		58	5021374	5021392	TCAGATACTGCTTGAACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8777	FBgn0033376	FBtr0088565	1	1	1	82	2R	4988036	4988056	GGGTAGCAATGAATCAATTCG		59	4988100	4988168	ATTGTATTGCACTGTCCCA		59	NA	
Drosophila melanogaster	50	CG34219	FBgn0085248	FBtr0112412	2	1	1	68	2R	4806217	4806235	TACACGCTAAACGATGAGG		59	4806167	4806185	CACCCTGTAGTGATACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8262	FBgn0027513	FBtr0088685	1	1	1	100	2R	4786812	4786881	ACCAATCAAGCAGGTAGAC		59	4786730	4786748	AACTGAGGAATCACTCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41118	FBgn0069933	FBtr0111234	1	1	1	63	2L	22812608	22812626	GAGACCGAAGAAGAGAAGC		59	22812563	22812581	AATTTATTTGCAGCTGCGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His2A:CG33829	FBgn0053829	FBtr0091833	1	1	1	60	2L	21478465	21478484	GAATTATTCCGCGTCATCTG		59	21478507	21478525	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His4:CG33907	FBgn0053907	FBtr0091911	2	1	1	113	2L	21430016	21430037	GGGATTAAAGGATAGAACAGTG		58	21429924	21429943	TACCTTGGATGTTATCACGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	dimm	FBgn0023091	FBtr0081514	1	1	1	93	2L	21339194	21339212	TTACAACACAGACGGACAC		59	21339269	21339351	TAGCTGTGAAGTTCGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9335	FBgn0032895	FBtr0081426	2	1	1	78	2L	20856308	20856327	ATTAACTCCGATCACGAGAG		58	20856429	20856447	AGAATCGCTTGGTGATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	cdc23	FBgn0032863	FBtr0081362	1	1	1	60	2L	20461030	20461049	AAATGCCTAGACTCAGAGGA		59	20461132	20461150	AGTCAATCGTCTTCAGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	fws	FBgn0024689	FBtr0080999	2	1	2	104	2L	17480379	17480398	TTATGTGATCAGCTCTGCTC		59	17480241	17480313	ATCTTCAAGGCATTAACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10839	FBgn0028858	FBtr0080800	3	1	1	60	2L	15979946	15979964	TATGATCAAGGACTGGACG		58	15979988	15980006	GATCTCGCTGAGATTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7968	FBgn0028532	FBtr0080551	1	1	1	60	2L	13849600	13849681	CAGAACTGAGAACTTTGGT		57	13849703	13849723	ATCCAATCCCTCGATAATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9014	FBgn0028847	FBtr0080579	2	1	1	141	2L	13723181	13723200	AAGATCAAGTGCACCTTCTC		59	13723001	13723077	CCTTGGGTACCTTCATTCC		59	NA	
Drosophila melanogaster	50	CG33642	FBgn0053642	FBtr0091619	2	1	1	95	2L	13530375	13530456	CGAACTTCAACTATACGTTGAC		59	13530512	13530530	AATATTCGGTGACAGTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18302	FBgn0032266	FBtr0080095	3	1	1	83	2L	10535691	10535775	GAGACCATTAGTGTTTATTGCC		59	10535819	10535837	TTATGTATCAGGCTTCGCC		59	NA	
Drosophila melanogaster	50	CG5375	FBgn0032221	FBtr0113033,FBtr0080058	3	2	2	174	2L	10328735	10328818	CAGATGAAAGTAAAGGCAAGG		59	10328581	10328600	ATTCCTGGAGATTGTTGACC		59	NA	
Drosophila melanogaster	50	Nckx30C	FBgn0028704	FBtr0079926,FBtr0079928,FBtr0079927	1	3	3	118	2L	9733529	9742390	CAACGTGGTATCAATGACAC		59	9733430	9733448	ATGATGTGCAGGATGACAG		59	NA	
Drosophila melanogaster	50	CG9568	FBgn0032087	FBtr0079765	1	1	1	171	2L	9010955	9011044	CATGCAGCAAACTACACTC		59	9011179	9011197	TTGTATAGACACTGCTGCT		58	NA	
Drosophila melanogaster	50	CG9520	FBgn0032078	FBtr0079790,FBtr0079788,FBtr0079789	3	3	3	130	2L	8945117	8945371	CATACTCAATGAAGGTCGCT		59	8945006	8945026	CATCGTATGGCATGAATTCAC		59	NA	
Drosophila melanogaster	50	CG7787	FBgn0032020	FBtr0079601	3	1	1	150	2L	8320480	8320498	TTGCAACTGTTTGATGCTG		59	8320682	8320700	TGTCATCATGTCCTTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8673	FBgn0031986	FBtr0079575	2	1	1	60	2L	8125245	8125263	AAGTACGTTCTCAAGACGG		59	8125287	8125305	TGAGGGTCAATAACTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trf	FBgn0010287	FBtr0079542	3	1	1	75	2L	8073106	8073197	CAACATGAGATACGATTGCAG		59	8073234	8073252	AGTTGATTGCCTTGAGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Uro	FBgn0003961	FBtr0079486	1	1	1	79	2L	7780615	7780633	CAGATCACTGCACAATCAC		58	7780673	7780763	GATCTGTTCTCCTTATAACCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10399	FBgn0031877	FBtr0079351	3	1	1	144	2L	6960470	6960547	CTTGCACTTACAGCAAAGC		59	6960655	6960673	CGGACAATTGGTTGATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34310	FBgn0085339	FBtr0112506,FBtr0112507	1	2	2	91	2L	6674206	6674224	ACTGAAACTAGTGGAACCA		58	6674356	6674374	GTCGATCCAATACCGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11319	FBgn0031835	FBtr0089641	1	1	1	93	2L	6574307	6574405	GTTATATGATTCCACGTATGCG		59	6574235	6574253	GTACTTGGACAGGTCACTC		59	NA	
Drosophila melanogaster	50	mRpL28	FBgn0031660	FBtr0078996	3	1	1	66	2L	4975092	4975162	TACAAAGCTGGAATCCTCC		58	4975192	4975210	TTCTTTCTTGCCGAAAGGA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	BG642163	FBgn0083938	FBtr0110769	2	1	1	100	2L	4641386	4641462	CTCCAAGAACAACTTCCCA		59	4641526	4641544	AAGGTATCCTGAGTTTGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ft	FBgn0001075	FBtr0077478	1	1	1	80	2L	4209379	4209471	TATGCCACTATACAGGTGAG		58	4209318	4209336	TTCCGGTATGTCAAAGGAG		58	NA	
Drosophila melanogaster	50	CG3285	FBgn0031522	FBtr0077586	3	1	1	81	2L	3331872	3331892	TCGAAGAGATGAAGTATCTCC		58	3331933	3332012	GGTCTGGTTATGAAATCTCTG		58	NA	
Drosophila melanogaster	50	CG15382	FBgn0031393	FBtr0077832	2	1	1	70	2L	2156159	2156177	CTCCAATTCCCAGTAAGGA		58	2156208	2156229	CTCTCGAATCATATTTCTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4259	FBgn0031389	FBtr0077854	2	1	1	83	2L	2129181	2129200	TATACTTTGCGTTTCTCACG		58	2129055	2129135	ATGTTTCACGTCGTATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12674	FBgn0031388	FBtr0077827	2	1	1	121	2L	2080947	2080965	GGTGAGGGTTACATACTCC		58	2081049	2081133	TTCAGCAGAAACTTGTTAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31664	FBgn0051664	FBtr0077895	1	1	1	80	2L	1825124	1825194	AAATAACAGGGTCGTGGTG		59	1825062	1825081	AGAAGTTCACCTTCTTGGAC		59	NA	
Drosophila melanogaster	50	CG4375	FBgn0031295	FBtr0077997	1	1	1	60	2L	1026686	1026707	CAGATGAGTATGTCAATGAAGG		58	1026647	1026666	GCCTAGCTTTCAAATACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pi3K21B	FBgn0020622	FBtr0078132	2	1	1	153	2L	299902	302027	AAGGACAAGTACATTGAGC		57	302144	302162	CATCCTTTAGCAACCAGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17078	FBgn0086855	FBtr0078138	2	1	1	80	2L	275245	275330	TGGCTCTAGTCAATTCACC		58	275183	275201	TCTGGCCTTCAATGTAGAC		58	NA	
Drosophila melanogaster	50	tRNA:CR33538	FBgn0053538	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG7378	FBgn0030976	FBtr0074649,FBtr0113004	1	2	2	62	X	18801683	18801701	GCATCTACATTGGTGATGC		58	18801789	18801807	TGATGCCCATCAATCTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Scamp	FBgn0040285	FBtr0074080,FBtr0074079	3	2	2	189	X	15343794	15343812	AGTAGAATTCCCATGTCCG		58	15343427	15343445	TCGTTGAGTTGATCTGCAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	up	FBgn0004169	FBtr0100561	1	1	6	91	X	13490773	13494112	AAGAGTACACAGGAGAGGG		59	13490700	13490720	GGTGATGTATTCTTTCAGCTG		59	NA	
Drosophila melanogaster	50	CG15754	FBgn0030492	FBtr0073782	3	1	1	113	X	13422922	13422940	GTTGAGGGCTTCTATGTCC		59	13423017	13423105	CCTCAGAAACTCAACTGGA		58	NA	
Drosophila melanogaster	50	CG10778	FBgn0029980	FBtr0071131	3	1	1	88	X	7826646	7826664	TGGAAGAATGCCTCTACAC		58	7826576	7826594	CATCATGAAGTCGCTTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34417	FBgn0085446	FBtr0112706,FBtr0112707,FBtr0112704	2	3	5	88	X	6448796	6448951	CACCACCAGATAACAAGCT		59	6449002	6449021	AGTAGGAGGAGTAGTTGGTG		59	NA	
Drosophila melanogaster	50	mod(r)	FBgn0016038	FBtr0089724,FBtr0089723	2	2	4	99	X	516384	516490	ATATCAGGATTGCAGCTTCC		59	516551	516570	TACGTGTTGAGGAAAGTCTG		59	NA	
Drosophila melanogaster	50	CG40204	FBgn0058204	FBtr0113834	2	1	1	73	U	497479	497500	TGAACTATCACAAGATCCTGTC		59	497534	497552	TACTTACCTTCACAACGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sox100B	FBgn0024288	FBtr0085735	2	1	1	196	3R	26891338	26891356	AATCTAGTCCAGGCATCAG		58	26907622	26907640	GGCTTCTTATCACTGTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31019	FBgn0051019	FBtr0085665	3	1	1	60	3R	26424349	26424431	TACAACGAAGATGGCTATTACC		59	26424452	26424470	AGTACTGAAGCAAAGTCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	bai	FBgn0045866	FBtr0084758	2	1	1	61	3R	20865520	20865541	GCTTTATATCCAAAGTTCCTGC		59	20865627	20865645	GGTCAAGAGCGATACTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5805	FBgn0039223	FBtr0084743	1	1	1	96	3R	20611625	20611702	CTATCAGGACGAACTGTTCC		59	20611548	20611566	TATTGTCGTTGTGAAGCCA		59	NA	
Drosophila melanogaster	50	Plip	FBgn0039111	FBtr0084454,FBtr0084453	3	2	2	112	3R	19584916	19584934	CTAAGTTCCTCCTACCAGC		58	19585009	19585090	CATCCGTTCTTCATCATGAG		58	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	1	22	22	84	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202454	17202549	TTCAGGAATACGATAGCGT		58	NA	
Drosophila melanogaster	50	ppan	FBgn0010770	FBtr0084012	3	1	1	262	3R	16943013	16943031	GGGCGAAGTACTGTATCAC		59	16943257	16943326	TGAACAGTTCTTCGTCTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7988	FBgn0038582	FBtr0083561	1	1	1	60	3R	14047109	14047127	ACGAGGATGAACTGATCAC		59	14047151	14047169	TCAGATTCAAGCTTCAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spn5	FBgn0028984	FBtr0083142,FBtr0083141	1	2	2	80	3R	11029204	11029285	TGGAACTTAATCCTATCCTTGC		59	11029145	11029163	AGGTCAGATCATCGAAGGT		59	NA	
Drosophila melanogaster	50	HtrA2	FBgn0038233	FBtr0082987	3	1	1	66	3R	10335968	10335986	AAGGTTATCGTTGGGTCAC		59	10335836	10335856	TTATGTGGGTCACTATGTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	snk	FBgn0003450	FBtr0112833,FBtr0082716	2	2	2	83	3R	8866930	8866948	ACAATGTCCCTGTCATCTG		59	8866809	8866884	TGTACTCCTGACATTTGGTG		59	NA	
Drosophila melanogaster	50	CG6465	FBgn0037818	FBtr0082323	1	1	1	80	3R	6501868	6501886	CTCCCTTGCTAATGGTCTG		59	6501749	6501824	ATTTGTGGAGGTTAGCCTC		59	NA	
Drosophila melanogaster	50	Pnn	FBgn0037737	FBtr0082126,FBtr0113210	1	2	2	60	3R	5567366	5567386	TTCGAGATCCGTAGATTAGAG		58	5567408	5567426	CTTCCCAGACCTTGAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8228	FBgn0037711	FBtr0082070	3	1	1	101	3R	5390089	5390161	CGCCTACTACATTTATTTCAGC		59	5390222	5390241	TACAGTTCCTTCACTTCTCG		59	NA	
Drosophila melanogaster	50	Fps85D	FBgn0000723	FBtr0082051,FBtr0082052	3	2	4	103	3R	5199589	5216617	CCTGAATCATCTCACCGAC		59	5199504	5199524	TTATGTAGTTCTCCTCGAAGC		59	NA	
Drosophila melanogaster	50	alpha-Est1	FBgn0015568	FBtr0081544	3	1	1	113	3R	3373518	3373536	AAGACGTAGTGGTTGTCAC		59	3372809	3372827	CCATCACTTGGTCCTTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Antp	FBgn0000095	FBtr0081652,FBtr0081650,FBtr0081647,FBtr0081654,FBtr0081653,FBtr0081655	3	6	11	159	3R	2724257	2734249	TTGGTAAGTGTCAAGAACG		57	2724116	2724134	CAAATCTTTATCTGGCGCT		58	NA	
Drosophila melanogaster	50	CG2017	FBgn0037391	FBtr0078664,FBtr0114518,FBtr0078663,FBtr0078662,FBtr0078661	1	5	5	92	3R	1685467	1685485	TATGTTTAGGCACATGCAC		58	1685182	1685200	TTGACCACATTACCCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	SPoCk	FBgn0052451	FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532	2	4	4	60	3L	22771883	22771901	AAATGGTGACTGGAGATGC		59	22776520	22776538	TCGATACCGATGAGATTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7470	FBgn0037146	FBtr0078477	3	1	1	170	3L	21969813	21969893	GATAGCAAAGAGTTTGACGG		58	21970100	21970118	GAGATTGTTGCGTGTTTCC		59	NA	
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	1	8	8	118	3L	16956803	16956821	AAGACCCATTGAAGGTAGC		59	16956901	16956979	CAATAGACCCTTGTGAATCAC		58	NA	
Drosophila melanogaster	50	Lmpt	FBgn0036672	FBtr0089452,FBtr0089457,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459	2	6	8	123	3L	16905417	16906329	CATCGACTCCAAGGATCTG		59	16906415	16906434	ACAGTAGATCTTATCCGCCT		59	NA	
Drosophila melanogaster	50	Eig71Ei	FBgn0014849	FBtr0075574	3	1	1	89	3L	15653060	15653078	CTTTAACGACTACTGTCGC		58	15653131	15653210	CGCACAGTAGATAAACAGG		57	NA	
Drosophila melanogaster	50	GRHRII	FBgn0036278	FBtr0075989	3	1	1	161	3L	12340423	12340441	CTACCTGAGCACCTATGTC		58	12335698	12340299	TGGAAGATGAAGAACTGTGG		59	NA	
Drosophila melanogaster	50	CG6163	FBgn0036155	FBtr0076181	2	1	1	71	3L	11356419	11356437	GGTCAGAGTAGAACCTCAG		58	11356176	11356384	TTGCATAAGAGTCGGTGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5660	FBgn0035942	FBtr0076560	1	1	1	105	3L	8955365	8955385	GCTACAGCAACTACAATTTCC		59	8955221	8955239	TTTCCTATCGCAGGTTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ets65A	FBgn0005658	FBtr0077055	3	1	2	122	3L	6105297	6105488	AGATTCCTCGTACAAATCGT		58	6107445	6109064	TGATATGGATCAGGTTGCC		59	NA	
Drosophila melanogaster	50	CG12605	FBgn0035481	FBtr0073168	1	1	3	73	3L	3959966	3959984	TAGTATTCAGCCCATGGAC		58	3959843	3959861	AAATCACCTTGCCATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13902	FBgn0035166	FBtr0072595	2	1	1	60	3L	840342	840360	GTATCTCCCATGCACTACG		59	840300	840318	TCTTCGAACCGAATACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kaz1-ORFB	FBgn0063923	FBtr0100851	2	1	6	125	3L	217099	217227	CTCCTGAACATAATGCGTG		58	217316	217334	GTTGCCTACCAGATTAACG		58	NA	InUTR
Drosophila melanogaster	50	l(2)efl	FBgn0011296	FBtr0072101	1	1	2	175	2R	19572656	19572674	AAGTTCGAGGTCATTCTGG		59	19572499	19572517	TGATGGAATTCGGACTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	px	FBgn0003175	FBtr0071838,FBtr0112820	2	2	3	83	2R	18424404	18424422	GACTGCAAGGATTACTTGG		58	18424275	18424359	GGGAATGTTGTATCTTCTGTG		58	NA	
Drosophila melanogaster	50	hts	FBgn0004873	FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086547,FBtr0086548	3	6	6	87	2R	15297367	15297385	AGAACGATGTCGAACTACC		59	15297237	15297316	TTCTTCCAGATCCCTTGAC		58	NA	
Drosophila melanogaster	50	qkr54B	FBgn0022987	FBtr0086925,FBtr0086923,FBtr0086924	3	3	3	85	2R	13358315	13358334	GTACATACGCGATTGTATGG		58	13358382	13358455	TTTCTATCTCGCCTTCCAG		58	NA	
Drosophila melanogaster	50	CG15614	FBgn0034168	FBtr0087050	3	1	1	101	2R	12833847	12833867	ATTATAGCCTTCCGGAAATGG		59	12833930	12834036	CATTTGGTGCTGATATCGC		59	NA	
Drosophila melanogaster	50	CG5522	FBgn0034158	FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026	3	6	6	89	2R	12676159	12676301	ACTACACTATAGCAGCCTC		57	12676354	12676372	AAATAACCGCATCCAACTG		58	NA	
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	2	5	7	81	2R	11836642	11836721	TTTGCTACGTGCTACTCTC		59	11836579	11836599	TCCGCTCTAGTTATATTCGAG		58	NA	
Drosophila melanogaster	50	Obp50c	FBgn0050072	FBtr0087553	1	1	1	199	2R	10259812	10259831	CATATAGCCCTGCTGATCTG		59	10260056	10260130	CATTCATAGAGGCAGGGTG		59	NA	
Drosophila melanogaster	50	CG18324	FBgn0033905	FBtr0087523,FBtr0087524	3	2	2	62	2R	10057159	10057177	CTGCATATTTACCGGACCA		59	10057202	10057221	GTTCAAGCTTGGTAAAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr49Ac	FBgn0033725	FBtr0087917,FBtr0087916	3	2	2	89	2R	8276583	8276769	CGATCACTCTTACCTGACTG		59	8276821	8276839	TAGAATCCCTTGGCATGTG		59	NA	
Drosophila melanogaster	50	CG11919	FBgn0033564	FBtr0100498	3	1	1	101	2R	6768255	6768273	TATCAAGCAAATGCTCCAG		57	6768338	6768419	TAGAAGTTCTCCTGAACGT		57	NA	Nonspecific
Drosophila melanogaster	50	Rep2	FBgn0028408	FBtr0112930,FBtr0088597	2	2	2	145	2R	5184910	5184928	TTGTTCTGGAGTGTGATGG		59	5185037	5185785	TATAGCTGATATGGCAGCC		58	NA	
Drosophila melanogaster	50	Tsp42Ea	FBgn0029508	FBtr0086172,FBtr0086171,FBtr0086173	2	3	3	109	2R	2884499	2884517	CAGAAGGACAAGTACCTGG		59	2884589	2884674	CAGCATTTCATGCTGATCTG		59	NA	
Drosophila melanogaster	50	Df31	FBgn0022893	FBtr0085919,FBtr0085920,FBtr0100293	3	3	3	78	2L	21627628	21627646	AGGATGAGGTTCAGAATGG		58	21627568	21627586	TTACTGAGTTTGCTGCTCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876	2	7	7	116	2L	16467746	16468063	AAACTATTCCGAATCCCTGG		59	16467649	16467667	TTCTTGTAGTATGCCGTCG		59	NA	
Drosophila melanogaster	50	CG17124	FBgn0032297	FBtr0080118,FBtr0080117	3	2	2	98	2L	10745671	10745689	CATCGACGAGATACTGGAC		59	10745528	10745546	TTCGATATGTCTGATTGCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Glt	FBgn0001114	FBtr0079727,FBtr0079726,FBtr0079725	1	3	3	279	2L	8674101	8674119	ACCATCCATTAACCCATCC		59	8674362	8674773	ATCATAGATTCGCGACACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Cka	FBgn0044323	FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538	2	4	4	99	2L	8036253	8036272	AACATCAATGGAAACGAGAG		58	8036391	8036411	CCACGATTATTTCATCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7742	FBgn0031690	FBtr0079092	3	1	1	94	2L	5213324	5213400	GCTACATGACTACGATATTGAG		58	5213251	5213269	GAATGTCCTTGAAGACCAG		57	NA	
Drosophila melanogaster	50	Rtnl1	FBgn0053113	FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039	2	7	7	143	2L	4994705	4994794	CCCTTTAAGGATTACCTGGA		58	4994581	4994601	GATCGAATCGATGATATCCTC		57	NA	
Drosophila melanogaster	50	CG34448	FBgn0085477	FBtr0112752	1	1	1	86	2L	2416924	2417002	TTGTCTCAGAAGATGCGTC		59	2416856	2416874	ATTCGACTTCAACCAGAGG		59	NA	
Drosophila melanogaster	50	CG5613	FBgn0030839	FBtr0074432,FBtr0074431	3	2	2	263	X	17320696	17320714	CTTCTGTTACTTCAGCCAC		58	17320941	17321461	ACAAAGCGGTATAGTCTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9522	FBgn0030587	FBtr0073986	1	1	1	143	X	14742526	14742690	CATTCTTCAGCGATGTTCC		58	14742401	14742419	CTATGTTCTCCACTCCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14053	FBgn0029603	FBtr0070424	2	1	1	60	X	2086469	2086488	TTATGTTCTGTGGACGATCG		59	2086428	2086446	AGAAGATGACTGCCATACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sox102F	FBgn0039938	FBtr0100600,FBtr0089252	3	2	2	82	4	822726	823031	AAAGTCATGGGAGAGTGTG		59	822662	822682	ATTTACTGAGTCACGACTCAC		59	NA	
Drosophila melanogaster	50	snmRNA:342	FBgn0065098	FBtr0091662	1	1	1	60	3R	19555866	19555885	GATATGGACGAGTTGGTAGG		59	19555825	19555844	GTTTCTCAGACGAGAAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14507	FBgn0039655	FBtr0113305	3	1	1	74	3R	25052651	25052958	CAGGATCATAGGGACACTC		58	25052595	25052613	GAACTCCAGACGAATCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14304	FBgn0038629	FBtr0083639,FBtr0114497	1	2	2	80	3R	14419607	14419628	ATTACTGTGATCTCAATGGAGG		59	14419481	14419566	CGCAAGTTAAGGCAATCTG		59	NA	
Drosophila melanogaster	50	CG7998	FBgn0038587	FBtr0083563	2	1	1	148	3R	14053486	14053504	GATCTGTTCAACGTGAACG		59	14053615	14053692	TAAACACCAGCCTTCTTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	sim	FBgn0004666	FBtr0082711,FBtr0082710	2	2	2	89	3R	8900718	8900810	GGATTTAAGGTGATACACTGC		58	8900861	8900879	GAGATTCTGGATGAGGCTG		59	NA	
Drosophila melanogaster	50	scpr-A	FBgn0037889	FBtr0082357	3	1	1	62	3R	7066934	7066955	TTCTCCAATTGATTCTCCTAGC		59	7066978	7066996	GGAGAGCACAATAGTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1142	FBgn0037504	FBtr0081559	1	1	1	110	3R	3299067	3299088	CCTGGAAAGTAATATGAAGAGG		57	3298565	3298996	TCAGCTCTGTTGATGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2023	FBgn0037383	FBtr0078666	1	1	1	81	3R	1650016	1650087	TACACGACATCCTGAACAG		59	1649953	1649971	ATAGCAGACAGTTTGGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL44	FBgn0037330	FBtr0078768	1	1	1	60	3R	1295717	1295737	TGATACAGTCTACGGAATACC		58	1295677	1295695	ACTGCGTGTAAAGATTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34306	FBgn0085335	FBtr0112502	1	1	1	63	3R	758296	758454	AATATCAAGTTCAAGAGCCC		57	758480	758498	CTACGCTCTGATATCACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	serp	FBgn0052209	FBtr0074953	3	1	1	102	3L	19695591	19698919	GAACACCTGTGATATCGAC		57	19695507	19695525	AATCGATGTACCATCCTCC		58	NA	
Drosophila melanogaster	50	Cpr76Ba	FBgn0036878	FBtr0074977	1	1	1	61	3L	19511350	19511368	ACCAATTGAGCATCCTCTG		59	19511307	19511325	ATGAGGGATGTAGCTAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Chmp1	FBgn0036805	FBtr0075092	2	1	1	79	3L	18676860	18676879	AAGGAATTGGAACGAAACTC		58	18676800	18676818	TTCTGAATCGCCTTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33258	FBgn0053258	FBtr0075442	1	1	1	60	3L	16076407	16076428	TTCTTTACGATCTACAAGGAGG		59	16076449	16076467	CAGTTCTTTCGCAGTAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32102	FBgn0052102	FBtr0075978	3	1	1	73	3L	12462361	12462380	CATGCGATTTATACGTGTCC		59	12462307	12462325	CAAATGTGCAGTGAAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32088	FBgn0052088	FBtr0076116	2	1	1	81	3L	11722722	11722740	TGAAACTCTCAAGGACAGC		59	11722782	11722885	GGCTACATTTCTTTGAAGAGTC		59	NA	
Drosophila melanogaster	50	CG10575	FBgn0035632	FBtr0077120	1	1	1	65	3L	5760734	5760752	TGTTTACGAACCTGGTCAG		59	5760687	5760705	GAAACAATACCCTGTCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nab	FBgn0053545	FBtr0091511	3	1	1	172	3L	4154235	4154374	AAGTTCTCAGTCAGCAAGG		59	4153996	4154014	CTCAGATCCACTGATTCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12011	FBgn0035257	FBtr0072764	3	1	1	105	3L	1694644	1694734	GCATTCTCTACGACTCCTG		59	1694803	1694821	GATTTCTTGAGGTGAAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mtacp1	FBgn0011361	FBtr0072676	2	1	2	156	3L	1331146	1331164	CTACGACAAGATCGATCCC		59	1331393	1331411	AGGTTTAAGCAGCTTCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Vha100-3	FBgn0028669	FBtr0086602	1	1	1	60	2R	14796859	14796877	GTCGGAGATTTGGATTCAC		58	14796817	14796835	CGATACTGAGCCCAATACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slim	FBgn0026173	FBtr0086692	2	1	2	75	2R	14329809	14331168	CGTGTTGATTTCTCATGGC		59	14331207	14331225	CGTTCGGTAAACGTAACAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5009	FBgn0027572	FBtr0089548	3	1	1	91	2R	13650486	13650564	GAACTATGATGTTTGTGCGT		58	13650617	13650636	AACAGCTGAATACCTAGTGG		59	NA	
Drosophila melanogaster	50	CG8407	FBgn0033687	FBtr0087985	1	1	1	60	2R	8041214	8041411	AATACTCATCGAACTACGAGC		59	8041432	8041451	AACTTCTTGTCCATGTTCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CAP	FBgn0033504	FBtr0088342,FBtr0088347,FBtr0088341,FBtr0088344,FBtr0088338,FBtr0088345,FBtr0088340,FBtr0088343,FBtr0088339,FBtr0088346	1	10	10	83	2R	6192541	6192559	TGATGCCAACTGGTATGAG		59	6192605	6192993	CCATCTCGACTGACAATCTC		59	NA	
Drosophila melanogaster	50	Or42b	FBgn0033043	FBtr0086051	1	1	1	60	2R	1684849	1684869	CTTTCAGATATCCATGAGCAG		58	1684745	1684763	GGTTATCACGGAGAAAGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8679	FBgn0032934	FBtr0081488	3	1	1	60	2L	21217633	21217651	TTCCATCAGTACGATGAGC		59	21217591	21217609	AGTCCTCCTGACTAATAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17323	FBgn0032713	FBtr0081104	2	1	1	253	2L	18825167	18825251	AATTACTATCGGTTCCCGC		59	18825466	18825486	CCAACTAATCAGGATCACTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tap42	FBgn0051852	FBtr0080466	2	1	1	63	2L	13367800	13367818	ACGAGCTAGAAGTTACCGA		59	13367844	13367933	GCAGTCTTCACTTTGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14946	FBgn0032405	FBtr0100290	3	1	1	166	2L	12063862	12063938	CAGGGATCTGATTCGAACC		59	12063714	12063732	GGATGGTTACCTCCATGAG		59	NA	
Drosophila melanogaster	50	snRNA:U6:96Ab	FBgn0004189	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-281aS	FBgn0067711	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30235	FBgn0050235	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-1	FBgn0046834	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	let-7	FBgn0043885	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snmRNA:430:CR33742	FBgn0053742	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi28S-1135d	FBgn0083009	FBtr0113572	2	1	1	90	X	17040211	17040232	CTAGTTGAAGGAAATTCCATCC		58	17040142	17040162	GCTTAATCTTCAAGCACTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DIP1	FBgn0024807	FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370	3	4	4	170	X	21497272	21497350	TTCTTTGCATTATGCGTCC		58	21497120	21497138	GAGAGTTGCACACTTTCAC		58	NA	Nonspecific
Drosophila melanogaster	50	bbx	FBgn0024251	FBtr0100599,FBtr0100598	2	2	2	74	X	21241691	21241710	ATATTCTGCAAGAGACATCG		57	21241747	21241835	TATCTTTGTAATGGCACGG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14581	FBgn0040645	FBtr0077186	2	1	1	75	X	21126536	21126554	GATAACCAGAATGGGACCG		59	21126593	21126611	TTAACTGCTGACCTCTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1835	FBgn0031127	FBtr0077277,FBtr0077278	3	2	2	61	X	20540148	20540166	ACTAGGCGACATTTACTGG		59	20540191	20540209	ACATCAGACTTCCGATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089406,FBtr0089407	1	2	13	95	X	20105884	20105902	TGGTCTACACAAAGCAGAC		59	20104509	20105411	TAGCATGAGCTTTACGTGG		59	NA	
Drosophila melanogaster	50	CG14200	FBgn0031023	FBtr0074721	1	1	1	93	X	19404262	19404280	TTATCCCTTCGAATGCGAG		59	19405171	19405189	GTCCTCTGAGAACTTGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7095	FBgn0030962	FBtr0074637	2	1	1	95	X	18715496	18715630	TATGCGTTTATGGGATACG		57	18715689	18715707	CAGACACAGTTGATTAGCA		57	NA	
Drosophila melanogaster	50	CrebB-17A	FBgn0014467	FBtr0074555,FBtr0074556,FBtr0112879,FBtr0074554,FBtr0074557,FBtr0112877,FBtr0112878	3	7	7	174	X	18267097	18267115	GGAGTCATACAGACAGCAG		59	18267326	18267344	TCTTACACGGAAAGGTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	RhoGAP16F	FBgn0030893	FBtr0074512,FBtr0074513	3	2	2	183	X	17990640	17990730	CGGTCACTTCAATAGAATAACC		58	17990874	17990892	CTGGTACTCGATCATCAGC		59	NA	
Drosophila melanogaster	50	CG5445	FBgn0030838	FBtr0074425,FBtr0074427,FBtr0074426	2	3	4	61	X	17197412	17198114	GATGAGTAACTGGAGCCTG		59	17198139	17198157	ACTGTAAGCTGCAGAAGTC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	f	FBgn0000630	FBtr0074420	1	1	6	175	X	17156845	17156863	AGTATGATGAATCTGGGCG		59	17157001	17163972	GTATTGGCGCAAATATCCAC		59	NA	
Drosophila melanogaster	50	Gbeta13F	FBgn0001105	FBtr0074109,FBtr0074106,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107	3	6	6	60	X	15755481	15755500	GCTCATTATCCGACTAAGCT		59	15755523	15755614	CTCTTGTTAGATGGTGGCT		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG15642	FBgn0030642	FBtr0074076	2	1	1	78	X	15361278	15361296	ATCATTTGTGGAACCTGGA		58	15361218	15361236	TATAGGCGTACGGATTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	acj6	FBgn0000028	FBtr0074016,FBtr0100326	2	2	4	94	X	15272252	15272270	CTCCTATCGAAGTTCGGAG		58	15265709	15271599	CGAAGATATCACCCTCGAG		59	NA	
Drosophila melanogaster	50	CG14414	FBgn0030571	FBtr0073931,FBtr0073930,FBtr0073932	2	3	3	219	X	14475705	14475797	TATGATGAAACGCAGAAGC		58	14475980	14475998	CGCGATCCTTGTTAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Set2	FBgn0030486	FBtr0073779	1	1	1	87	X	13314261	13314279	AAACGTAAGCTACCAATGC		58	13314330	13314412	GACTCTGGGAACTCTTGAC		59	NA	
Drosophila melanogaster	50	CG15720	FBgn0030442	FBtr0110989,FBtr0073718	1	2	2	168	X	12927411	12927429	GAATTCCCAAACTTTCGGC		59	12927561	12927579	AGCTAGTGATGATCGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0073587,FBtr0073586,FBtr0073584,FBtr0073585	1	4	10	199	X	11848297	11856053	GTCGAACTCAATCAACGTC		58	11846241	11848134	TGATATTCCCGAACACCTG		59	NA	
Drosophila melanogaster	50	Cyp28c1	FBgn0030339	FBtr0073565	1	1	1	92	X	11734800	11734818	AACTCCAGTTGGTCAATCC		59	11734872	11734951	GTAGGCTTTCATTAAAGCAGG		59	NA	
Drosophila melanogaster	50	inaF	FBgn0023077	FBtr0112903,FBtr0073614	2	2	2	66	X	11621081	11621099	CATAAGTCACGCTATGGGT		59	11621033	11621051	GATTAGAGGCATGTGACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16922	FBgn0030254	FBtr0073389	1	1	1	60	X	10849905	10849923	AACAATCTGACGGATGAGG		59	10849947	10849965	CTATTTCCGCATCATCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tango5	FBgn0052675	FBtr0071501,FBtr0071499,FBtr0071500	1	3	3	107	X	10655691	10655709	CACGTTTCTGCTCTATCTG		57	10655534	10655623	CAGATAATATCATCGGGATACG		57	NA	
Drosophila melanogaster	50	CG15307	FBgn0030192	FBtr0071442	2	1	1	83	X	10238018	10238036	ATAGGAGGCGTAACTACGA		59	10238083	10240893	ACGATCGGTAATTAAGCCT		58	NA	
Drosophila melanogaster	50	CG15312	FBgn0030174	FBtr0071421,FBtr0071423,FBtr0071422	3	3	3	71	X	9955170	9955254	GATAGTTCAGACTGGTCGTG		59	9955118	9955136	AAGCATACGTAGATTCCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Obp8a	FBgn0030103	FBtr0071307	3	1	1	261	X	9109372	9109391	TATCTCCATTGCTTCTGGTC		59	9109615	9109633	TGATGACATCGGACATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ND75	FBgn0017566	FBtr0071180,FBtr0071181	2	2	2	172	X	8143115	8143194	GCACTATTAGCAAATCCATCG		59	8142963	8142981	CTAGATAGCCACACTCTGC		59	NA	
Drosophila melanogaster	50	CG2147	FBgn0030025	FBtr0071166	1	1	1	67	X	8135143	8135161	CACAAGATTCAATCTCGCC		58	8135192	8135210	ATCCGGATATGGAATCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or7a	FBgn0030016	FBtr0071186	2	1	1	60	X	8059137	8059155	TTATCATGAACTGGACGTG		57	8059095	8059114	AGATAGATAACGGCGTACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hdm	FBgn0029977	FBtr0071133	1	1	1	106	X	7813103	7813124	CATACATCAGTTTACTGCAGTG		59	7812915	7812934	GTATATGTTGTTGACAGGCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3192	FBgn0029888	FBtr0100409,FBtr0070990	2	2	2	71	X	6571713	6571732	TACTATCCCTGGGACTATCC		58	6571585	6571603	GTACAGATCATGATCCGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3842	FBgn0029866	FBtr0070903,FBtr0070904	1	2	2	60	X	6236587	6236605	GGTGAGAAATTTCGTGGAG		58	6236627	6236647	ATTGATCAGTATATCCAGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15770	FBgn0029803	FBtr0070811	1	1	1	60	X	5659601	5659619	GGATAATACCGATGACGAC		57	5659643	5659661	ATATAAACCTGCAAGGCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sirt4	FBgn0029783	FBtr0070852,FBtr0070850,FBtr0070851	3	3	3	60	X	5558825	5558844	TGGCGGATATCAAGATATCC		58	5558784	5558802	CGAAAGTCGAACAGTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Usf	FBgn0029711	FBtr0070701,FBtr0070700	2	2	2	60	X	4442355	4442374	AATATCAGCAATGCGAATCC		58	4442314	4442333	TGTGGTGATTGGTAATGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rala	FBgn0015286	FBtr0070584,FBtr0070583,FBtr0070582	3	3	3	98	X	3603937	3603957	AGAGATAACTACTTTCGCAGC		59	3602942	3603880	GATTTGTTCTCTGAATTCCTGG		59	NA	
Drosophila melanogaster	50	CG10804	FBgn0029663	FBtr0070592,FBtr0114487,FBtr0070591	2	3	3	146	X	3374463	3374481	GATTATGTTCTTGCTGGCC		58	3374263	3374281	TAGAAGATCGGTATGCCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	phl	FBgn0003079	FBtr0112818,FBtr0111025,FBtr0070401	3	3	3	147	X	2236245	2236263	CACAGATCACTCCAACTCC		59	2236374	2236460	CTCCGCCAGAATATTCCAG		59	NA	
Drosophila melanogaster	50	CG11596	FBgn0023522	FBtr0070318,FBtr0070320	1	2	3	115	X	1822606	1823045	TGGACCAGATTGATATTCCA		58	1823123	1823141	TTCTAAGGCTCCTTCAGTG		58	NA	
Drosophila melanogaster	50	CG14777	FBgn0026872	FBtr0070253	3	1	1	95	X	1362357	1362375	TGAAGACCTTTAGTCAGGC		58	1362498	1362516	TAATGGTCTGCAGGATAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12773	FBgn0024365	FBtr0070235	2	1	1	176	X	1246461	1246479	AACCTATGGCCAAAGTACG		59	1246246	1246321	CAAGTACAGGAACGTGGAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CR40648	FBgn0085762	FBtr0114212	1	1	1	60	U	9820051	9820069	ATTCTAACTGAATCGGCGG		59	9820090	9820111	TCTTAGGTCCTTGGTTTATCAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17925	FBgn0039967	FBtr0113764	1	1	1	60	U	5531905	5531923	TAGTGGAACACAATGACGG		59	5531863	5531884	GTCTCATCTACTTCATCAGGAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40583	FBgn0085498	FBtr0113908	1	1	1	60	U	4408778	4408796	ATGGAGGAATTGTTCTGGT		58	4408736	4408754	TAGTCAACGCTGTAAACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40339	FBgn0058339	FBtr0113866	1	1	2	70	U	1062795	1062815	TGTATACTCCTGTTCTCTGGA		59	1062845	1062865	TCGTTATCTCCACATAACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40195	FBgn0058195	FBtr0113828	2	1	1	60	U	1047726	1047744	CGAATTGGGAACGATAACG		58	1047684	1047704	ATCTATTTCCTCTGAAGGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089210,FBtr0089215,FBtr0089213	1	3	7	81	4	1079909	1080058	CGTTAATGAAACTGACAACG		57	1079847	1079867	CTCACTGTATGAAGAACTCAC		58	NA	
Drosophila melanogaster	50	MED26	FBgn0039923	FBtr0089253,FBtr0089254	3	2	2	94	4	802283	803807	AATAGACGATCTGGGAAACAC		59	802209	802230	ACGAGGTACATTCCTTTATCTC		59	NA	
Drosophila melanogaster	50	bt	FBgn0005666	FBtr0089792,FBtr0089791,FBtr0089794	3	3	4	99	4	750190	751409	TTAACTTTCAAGGTGCGAG		57	751472	751490	TTCATGGTGATCAATGTGC		58	NA	
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0089130,FBtr0089131	2	2	5	113	4	363634	363652	GGTATGAATCTGGGTGAGG		59	350957	363558	GCCTATTACTTGTGTTTGCA		58	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	3	7	7	85	4	208987	209060	CGGATCATAGACTTACGGA		57	208920	208938	ATCGAAGCATGGTTTAGTC		57	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156	3	9	10	81	4	103362	106346	TCCTAAGATGGGCTTAACTC		58	106387	106408	CATATCTGAACTTAGCATTGGG		58	NA	
Drosophila melanogaster	50	ci	FBgn0004859	FBtr0089178	2	1	1	82	4	72691	72709	AGAATTCCCGGATACATGG		58	72565	72646	CAATTGACATAGGGATCGTG		58	NA	
Drosophila melanogaster	50	CG1890	FBgn0039869	FBtr0085836	1	1	1	60	3R	27569622	27569640	AAGGAGTACGAGGTACTGG		59	27569664	27569682	AATCTGTCTCGATCAGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12063	FBgn0039851	FBtr0085790	2	1	1	136	3R	27331593	27331611	ATAAGTTCGCCTTCAATGG		57	27331711	27331956	AATTATGAAGCCATAGCCG		57	NA	
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634	2	4	5	103	3R	26212311	26213196	AGATTTCAAGTGCTCCCTG		59	26212226	26212244	TGATCTCCTCCTGGATCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15529	FBgn0039748	FBtr0085567	2	1	1	60	3R	25978568	25978588	TTCATAAGGCAAGTGGATAGG		59	25978610	25978628	GCTCCTGAGACTTCTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7943	FBgn0039741	FBtr0085560,FBtr0085559	3	2	2	208	3R	25873516	25873534	TTTCGTACTGCGAGAAGAG		59	25873773	25873791	CTACGTAAATTCGCTTGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tace	FBgn0039734	FBtr0085551,FBtr0085550	3	2	2	126	3R	25826681	25826758	GCATATGGATCACGATAGCT		59	25826846	25826865	AATGTGATAGGTTTCCTCCG		59	NA	
Drosophila melanogaster	50	CG7911	FBgn0039735	FBtr0085606,FBtr0113308	3	2	2	94	3R	25829774	25829792	AGACCAAATGTCGAGTTCC		59	25829613	25829716	AAGTTCATCTCGACCTTGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG12877	FBgn0039544	FBtr0100446,FBtr0085223,FBtr0085222	2	3	3	83	3R	23536240	23536258	CGGATTATACAGGAGAGCG		59	23536380	23536400	GCGCAGATAATACTTGATGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31323	FBgn0051323	FBtr0084988	2	1	1	86	3R	22009675	22009773	TCATTCGAAGTGGCTACTG		59	22009823	22009841	TGTTGTGAAAGGGATCGTC		59	NA	
Drosophila melanogaster	50	HLHmdelta	FBgn0002734	FBtr0084954	2	1	1	60	3R	21823841	21823859	CTCAAGGACATGAAACAGG		58	21823881	21823901	CTAGATTAACTGGTTCTTCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4685	FBgn0039349	FBtr0100571,FBtr0084891,FBtr0100570,FBtr0100569	1	4	4	192	3R	21452227	21452245	GATTCCAGCAATGCAAAGG		59	21451877	21452071	GTTTGTGCCACTTCTTGAG		59	NA	Nonspecific
Drosophila melanogaster	50	XNP	FBgn0039338	FBtr0084837	1	1	2	64	3R	21306131	21306149	TTGTCCTTACTGGTACACC		58	21305987	21306005	CACAAACTGGATCATGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625	3	8	17	93	3R	20521092	20521110	AGGACATTAAGGACGAGAC		58	20521838	20528752	GTGATATCACCTAAGTCATCG		57	NA	
Drosophila melanogaster	50	CG5746	FBgn0039186	FBtr0084631,FBtr0084630	2	2	2	116	3R	20172702	20172815	ATCAGAACTACAACTCGACG		59	20172605	20172623	GTCCGGTAGCATTGTAGTC		59	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	1	5	6	80	3R	20045369	20045388	ATGAACATCTACAACGAACC		57	20025660	20045326	TGGATTCACGGTAAATGAC		57	NA	
Drosophila melanogaster	50	CG5524	FBgn0039164	FBtr0084573	3	1	1	81	3R	20015194	20015212	TTGCTGAAAGGACTTTGGA		59	20015070	20015152	GGTTCACTTCATCTGTAAACAC		59	NA	
Drosophila melanogaster	50	CG31140	FBgn0051140	FBtr0084497,FBtr0113392,FBtr0084498	1	3	5	80	3R	19802103	19802122	CACAAATCGGATAAATCGGA		58	19802162	19802239	CACCTTGATCATCTCTATATCC		57	NA	
Drosophila melanogaster	50	cnc	FBgn0000338	FBtr0084397,FBtr0084394,FBtr0084392,FBtr0084395,FBtr0084396,FBtr0084393,FBtr0084398	1	7	7	60	3R	19014130	19014148	CGACTATACAGTACGACCA		57	19014088	19014107	GGTATGATTTAGTTGCACCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ir	FBgn0039061	FBtr0113273,FBtr0084371	2	2	2	161	3R	19009817	19009835	AACAGTCCACTGTACATGC		59	19010018	19010036	CACATTCACGAAACGATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	unk	FBgn0004395	FBtr0084403,FBtr0084402	1	2	2	143	3R	18981726	18981806	TACAAGTACAGGTCCACTC		57	18981601	18981619	GGTCGACTTGTAGATCTCC		58	NA	
Drosophila melanogaster	50	how	FBgn0017397	FBtr0084177	2	1	3	119	3R	17897748	17900174	TATGCTGATCATAGCGTAGG		58	17900256	17900274	TATCTCAATGAAACCCGCC		59	NA	
Drosophila melanogaster	50	TotC	FBgn0044812	FBtr0083972	3	1	1	61	3R	16698926	16698944	TTATTCGAACCTCCAACGA		58	16698969	16698987	GATATCGAGCAGCTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17838	FBgn0038826	FBtr0113256,FBtr0083960,FBtr0083963,FBtr0083958,FBtr0083961	2	5	8	83	3R	16624057	16624076	CTAGCATAATGTCCTTGACG		58	16624122	16631677	TACCGACTACGTATTCACG		58	NA	
Drosophila melanogaster	50	CG17267	FBgn0038821	FBtr0083931	3	1	2	131	3R	16563644	16563662	TACGATCCCTACTTTGTGC		59	16563427	16563445	AAGTAGGGTCACCTTTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	TFAM	FBgn0038805	FBtr0083948	3	1	2	60	3R	16401898	16401916	AGAAGGAGGTCTACATGCA		59	16401332	16401875	GAAATCGCTTTCCTGTAGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	bnl	FBgn0014135	FBtr0083795	3	1	1	89	3R	15626212	15653384	GTGAATTCACAATTCTCCAGC		59	15626143	15626161	CGTCCATGCAGAGATACAG		59	NA	
Drosophila melanogaster	50	CG14304	FBgn0038629	FBtr0083639,FBtr0114497	2	2	2	80	3R	14419608	14419629	CATTACTGTGATCTCAATGGAG		58	14419482	14419568	GCAAGTTAAGGCAATCTGAC		59	NA	
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642	3	13	13	133	3R	14261181	14261201	ATGTCAGATACTCAGAGATGC		59	14260761	14260780	GTTGTTATCTGTGAGACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083650	3	1	13	98	3R	14303854	14303875	CGAAAGATACAGATACTTTGCC		59	14261504	14303797	GTGTTGTACCTTGTCATTTCC		59	NA	InUTR
Drosophila melanogaster	50	CG14313	FBgn0038579	FBtr0083615	1	1	1	80	3R	14017124	14017142	CTTTAGCATCATGCAGCAG		59	14017062	14017080	TAGCTGACGTTGTTCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tinc	FBgn0038554	FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769	3	4	4	114	3R	13691908	13692611	CTTCCTAGCAGCTCTTGTC		59	13692689	13692707	GTAAGTGCTGTCCAATGGA		59	NA	
Drosophila melanogaster	50	CG14897	FBgn0038434	FBtr0083309,FBtr0083310	1	2	2	94	3R	12294591	12294682	CTTCATTGAAGCAATCGCA		59	12294358	12294376	AGTATTTCCTTCGTCGTCC		59	NA	
Drosophila melanogaster	50	Bin1	FBgn0024491	FBtr0083279	3	1	1	60	3R	12012290	12012309	GTGTCGGAGTATATGTTCGG		59	12012249	12012267	CTTGCCAGGTGTAAATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6006	FBgn0063649	FBtr0113477	3	1	2	155	3R	11995598	11995616	GCAAGTTCACCATTAGTGC		59	11995735	11995820	CGATCTTGTTCAGTAGCGA		59	NA	
Drosophila melanogaster	50	CG5903	FBgn0038400	FBtr0083281	2	1	1	81	3R	11971673	11971691	CTACAACTTCATCAAGGGC		58	11971610	11971628	GTACTTAAGGTCCTCCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32856	FBgn0052856	FBtr0083239	1	1	1	60	3R	11790613	11790632	CAATCACAACTGTGATGGAG		58	11790572	11790592	ACGAGATCCAGATCTATTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5404	FBgn0038354	FBtr0083165	2	1	1	81	3R	11531852	11531925	TACTAGAGTTATTGGACCGT		57	11531967	11531987	GATGTGGATAGATATCGACAG		57	NA	
Drosophila melanogaster	50	CG14868	FBgn0038330	FBtr0083109	3	1	1	90	3R	11194491	11194509	GAGGACACCATTCTAAGCC		59	11194361	11194380	TTAGATCGCTTAAGCTCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14864	FBgn0038311	FBtr0110811,FBtr0083128	3	2	2	60	3R	11093343	11093361	TCACTTGTCCAGCTTTCAG		59	11093301	11093319	CTACTGCGGAAATCATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Oscp	FBgn0016691	FBtr0083063	2	1	2	113	3R	11092082	11092162	GTGCCCTTAAGTCTTTCCT		59	11092239	11092257	TCATGTCGACGTACTTGTC		59	NA	
Drosophila melanogaster	50	CG7262	FBgn0038274	FBtr0083008	1	1	1	212	3R	10722102	10722183	TGTTAACAGTGGACTCTTCC		59	10721909	10721927	CTTAACGATCCACCTAGCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Neu3	FBgn0051314	FBtr0100189,FBtr0082973	1	2	2	82	3R	10496557	10497104	TATCTGCTTAAGCAGGCAG		59	10496493	10496511	TAGTCGTGACTATGGTCGT		59	NA	
Drosophila melanogaster	50	spn-B	FBgn0003480	FBtr0082933	1	1	1	95	3R	10154601	10154672	ATCACATTGAGGCAGAACC		59	10154728	10154749	CAGAATCAATAATGATCAGGCC		59	NA	
Drosophila melanogaster	50	CG3153	FBgn0038198	FBtr0082889	3	1	2	189	3R	9916527	9916545	CTAGCTTCCAAGAGCTACG		59	9917116	9917541	CTTCGATTTGGATTTCGGG		58	NA	InUTR
Drosophila melanogaster	50	Act87E	FBgn0000046	FBtr0082786,FBtr0082785	2	2	2	60	3R	9252474	9252492	AGAAGGACTCCTATGTTGG		57	9252515	9252534	TATTTCAGGGTGAGGATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	timeout	FBgn0038118	FBtr0082712	1	1	1	83	3R	8983780	8983798	GAAGAATACGAAGAGCAGG		57	8983972	8984699	TTTCGGATTCAGCAATCTG		58	NA	
Drosophila melanogaster	50	CtBP	FBgn0020496	FBtr0082701,FBtr0082702,FBtr0082699,FBtr0082700,FBtr0100161	3	5	5	80	3R	8845523	8845622	AAATACACGAGAAGGTCCT		57	8845665	8845684	TCTCAAGATCCTCCTTTGTC		58	NA	
Drosophila melanogaster	50	CG5724	FBgn0038082	FBtr0082657	1	1	1	60	3R	8565722	8565741	TATGTTCGATAAGATGGCGG		59	8565764	8565782	GTTGAGATACAGGTCACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GstD6	FBgn0010042	FBtr0082573	3	1	1	60	3R	8203435	8203453	GATGGTATAAGAACGCCCA		59	8203476	8203495	TGAATTCTTGCCAAGTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GstD1	FBgn0001149	FBtr0100410,FBtr0082607	3	2	2	87	3R	8193741	8193759	AATGTGAACAGGTGGTACG		59	8193672	8193691	AGTACTTCTTGAACTCCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	2	15	15	121	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811941	7812031	TTCTTCAGGATGTTGGAGG		58	NA	
Drosophila melanogaster	50	glo	FBgn0037954	FBtr0089917,FBtr0089919	3	2	3	82	3R	7642968	7642986	TTTGTTCAGTTCGAAAGCC		58	7642468	7642923	ATCTCAATATACCTGTGCCC		58	NA	
Drosophila melanogaster	50	CG6629	FBgn0037860	FBtr0082380	2	1	1	60	3R	6940719	6940739	CACGATACCAGAGATCTATGC		59	6940679	6940698	AGACAGAGCAATGGTTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11870	FBgn0037804	FBtr0090031,FBtr0090030,FBtr0090033,FBtr0090032	1	4	4	94	3R	6117481	6117566	CCACATCTACGAAGTATTTGAG		58	6117620	6117639	TCCTTTCAGACAGATAGTCG		58	NA	
Drosophila melanogaster	50	CG3934	FBgn0037783	FBtr0082176	3	1	1	146	3R	5886202	5886220	CAAATCGACGATTGTGACG		59	5886444	5886462	ATAGGGTATGGTCACTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	unc-115	FBgn0037733	FBtr0082096,FBtr0082097	1	2	4	102	3R	5515591	5516165	CTTAGCGAGATGCACTACC		59	5515507	5515527	GATAGCTGTAGGTGTAGATGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG9444	FBgn0037730	FBtr0082099	3	1	1	89	3R	5507628	5507707	GCAGGAACGAATAAAGAATTCC		59	5507560	5507579	AGTAATTCGCCCATCATGAG		59	NA	
Drosophila melanogaster	50	CG8358	FBgn0037727	FBtr0082081	1	1	1	60	3R	5502275	5502295	GCTGCTCTATAGATTCGATCC		59	5502316	5502335	CGAACAGTAGTTCCTTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11971	FBgn0022347	FBtr0082012	1	1	1	80	3R	4817339	4817415	AAAGCACTTAGAAGAGGGT		58	4817277	4817296	TGAGATTGAAGGTTAACTGG		57	NA	
Drosophila melanogaster	50	CG11768	FBgn0037625	FBtr0081943	3	1	1	83	3R	4580785	4580803	CAGTTTAAGCAGTCCATCG		58	4580720	4580738	GTTATCGACGGAACTCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33779	FBgn0053779	FBtr0091780	2	1	1	60	3R	4030151	4030171	TTGAGCCGAGTATAAAGTACG		59	4030111	4030129	GGACATGGATGGGTATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17816	FBgn0037525	FBtr0113202,FBtr0081770	2	2	3	185	3R	3697537	3697555	GAGTATACAGATGGACGCC		59	3691467	3694093	CAACTCATGTAGAGTAGCCG		59	NA	
Drosophila melanogaster	50	Taf1	FBgn0010355	FBtr0081686,FBtr0081684	1	2	3	156	3R	2480377	2480939	CAGATGGCAGATGAATCCA		59	2481058	2481077	TGTAAGGCCCATTATCATCC		59	NA	
Drosophila melanogaster	50	CG33097	FBgn0053097	FBtr0081735,FBtr0110852	2	2	2	89	3R	2191998	2192077	TCGAATGATTTCCAAGTCGA		59	2191928	2191946	TCTAGTGGTACTAAGGCCC		59	NA	
Drosophila melanogaster	50	Osi5	FBgn0037413	FBtr0078595	1	1	1	60	3R	2053545	2053564	GTCTTGCGGAATTTAAATCG		57	2053584	2053605	CTATCTCCAATCCTCTAATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10979	FBgn0037379	FBtr0078631	1	1	1	80	3R	1621009	1621112	GGATACACAGATCAGAATTCCA		59	1621151	1621171	GCGTAGCATATGTTCAATGTC		59	NA	
Drosophila melanogaster	50	plx	FBgn0004879	FBtr0078718	2	1	2	92	3R	1533897	1534232	ATGGATAACATACCCAAGCA		58	1534287	1534305	CACTAGGAACACCATCGTC		59	NA	
Drosophila melanogaster	50	kkv	FBgn0001311	FBtr0078798,FBtr0078800,FBtr0078799	3	3	3	99	3R	1204859	1204877	GTAAGAATTCGGTGATGGC		58	1204709	1204796	TTGTTGTTAATCGGTGCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	kkv	FBgn0001311	FBtr0078798,FBtr0078800,FBtr0078799	1	3	3	99	3R	1204859	1204877	GTAAGAATTCGGTGATGGC		58	1204709	1204796	TTGTTGTTAATCGGTGCTC		58	NA	
Drosophila melanogaster	50	CG1116	FBgn0037297	FBtr0078775,FBtr0078774,FBtr0078776	2	3	3	210	3R	1045991	1046009	CAAGATCACCATTGCTACG		58	1046182	1046266	GGTTACGTTCTTAAGGTGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	corto	FBgn0010313	FBtr0078844	2	1	1	81	3R	911778	911796	TGTGTTACCGAAACGAGAG		59	911715	911733	GTCGTAGTTGGCATAACAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14657	FBgn0037282	FBtr0078875	3	1	1	291	3R	645557	645575	AGACAGCGAAGATGATGAG		59	645228	645247	TGTTAATTCCGTATCCAGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31530	FBgn0051530	FBtr0078882	3	1	1	87	3R	578309	578534	TAATCTATCTGTGGCAGTGG		58	578241	578259	TCCAGCAAGATCTTCTTGG		59	NA	
Drosophila melanogaster	50	snRNA:U5:63BC	FBgn0003938	FBtr0073017	1	1	1	60	3L	3090821	3090840	GTCGAATAAATCTTTCGCCT		58	3090862	3090881	GACTCATTAGAGTGTTCCTC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41453	FBgn0084016	FBtr0111174	3	1	1	132	3L	23081059	23081080	GGTTGGAGAACAAGAATATGAG		58	23082203	23082223	GAGAATAAGATTTCGATCGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ddx1	FBgn0015075	FBtr0078492	2	1	1	69	3L	22258367	22258385	AAGTTTCTGATTTGCACGG		58	22258417	22258508	CATTTATCATAAACGGCAGC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG32447	FBgn0052447	FBtr0078460,FBtr0078461	1	2	2	183	3L	21687566	21687584	TTCTGCTATTATCCTCCCG		58	21686807	21687419	GTCGTATAAACATGCCTGG		58	NA	
Drosophila melanogaster	50	CG11307	FBgn0037106	FBtr0078420,FBtr0078421	3	2	2	168	3L	21612249	21612328	CAATTTCAGAAACAGCCGA		58	21612460	21612478	CTTAAGGACGACTTGACGT		59	NA	
Drosophila melanogaster	50	Smc5	FBgn0052438	FBtr0078374,FBtr0078373	2	2	3	196	3L	21565422	21565496	TAAAGCAGCAACCAGAGAC		59	21565656	21565674	AGTCATGTATTGCCTCTCG		59	NA	
Drosophila melanogaster	50	Pc	FBgn0003042	FBtr0078405	3	1	1	101	3L	21308450	21308468	GTTACGGCGTAAATTCCAC		59	21299260	21299278	ATGTACAATCAATACCGGC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG34261	FBgn0085290	FBtr0112456,FBtr0112455	3	2	2	100	3L	21190184	21190203	CAGTTGTTGAATTTGCAGAG		57	21190265	21190284	CTGGATTTCTTGGTGATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13253	FBgn0037015	FBtr0113182,FBtr0113183	2	2	2	64	3L	20706706	20706793	CAAGAACCTAGAGGACTGC		59	20706660	20706678	CATCGAATTCCTGTTCGAG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG14187	FBgn0036938	FBtr0074868	2	1	1	60	3L	20105625	20105644	AGGACTTCTTCATGTACCTG		58	20105584	20105602	AATCCTGACATCGTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp305a1	FBgn0036910	FBtr0074925	2	1	1	118	3L	19806259	19806278	GCGATTCTAATTGGTTTCGT		58	19805024	19805279	TCCTTACGGAACTGTAATGTG		59	NA	
Drosophila melanogaster	50	CG8533	FBgn0036907	FBtr0074877,FBtr0114601,FBtr0074878,FBtr0074876	2	4	4	170	3L	19794992	19795010	CATCTTCGACTACAAGCCT		59	19795205	19795275	TATGGTTCAGATGTGTCCAC		59	NA	
Drosophila melanogaster	50	CG32212	FBgn0052212	FBtr0074932	1	1	1	108	3L	19481130	19481148	CCTTGTCCTGATAACCGTC		59	19481219	19481238	AGCAGAGTAGTCTAGAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075004	3	1	11	81	3L	19301392	19301410	AATGTCACTTTGACAGTGC		58	19301267	19301350	CGATATTGGGTTCATAGTACAG		58	NA	
Drosophila melanogaster	50	nes	FBgn0026630	FBtr0075021,FBtr0075020,FBtr0075019	2	3	3	86	3L	19251647	19251665	ATACATGGTTGTGAGCACC		59	19251406	19251424	GAGTTGTTCAGAATGTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18363	FBgn0036808	FBtr0075090	3	1	1	82	3L	18690917	18690935	TGGTATACCAACGGATCTG		58	18690789	18690871	CATGCTTATAGTTGCGTCG		59	NA	
Drosophila melanogaster	50	CG11905	FBgn0036678	FBtr0075303,FBtr0075302,FBtr0075306	2	3	10	122	3L	16928316	16928334	ACTATTCACCAGAACCTCG		58	16926098	16926397	GCTGCTTCTGAATTTCGAC		59	NA	InUTR
Drosophila melanogaster	50	CG11905	FBgn0036678	FBtr0075303,FBtr0075302,FBtr0075306	3	3	10	122	3L	16928316	16928335	AACTATTCACCAGAACCTCG		59	16926099	16926398	CTGCTTCTGAATTTCGACG		59	NA	InUTR
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0075441	3	1	6	61	3L	16070861	16070879	AAGAAGAGCTATGGAACGC		59	16070904	16071932	GCTTCTGCAATAGCTTGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7656	FBgn0036516	FBtr0075592,FBtr0075593	1	2	3	168	3L	15579686	15580114	GGACTCACAGGACAATGAG		59	15579536	15579554	ATCGTAGAAGTTGGCATCC		59	NA	
Drosophila melanogaster	50	gdl-ORF39	FBgn0028377	FBtr0091756	1	1	1	60	3L	15503296	15503315	TCGGATACGAAGATTATCGA		57	15503711	15503729	GAAGTGTGGATTGTTGGTC		58	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	ome	FBgn0002997	FBtr0112816	1	1	2	90	3L	14733240	14737299	CGGTTCAAGAATCTAATGCA		58	14737352	14737370	ATAGAGCAACCGCTATGAC		59	NA	
Drosophila melanogaster	50	Hsc70Cb	FBgn0026418	FBtr0075771,FBtr0075772,FBtr0075773	1	3	3	199	3L	14032909	14032927	ATGATATCGACGTCTCGTC		58	14033087	14033172	GTTAAAGACCTGCTCAATAAGC		59	NA	
Drosophila melanogaster	50	CG32118	FBgn0052118	FBtr0075889	3	1	1	60	3L	13091355	13091375	CCATTGATGTGATACAACTCG		59	13091396	13091415	AGAAGACTACTAGGGTTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11279	FBgn0036342	FBtr0075887	3	1	1	83	3L	13040387	13040405	GTCCGTTATTTCGAAGTCG		58	13040452	13040470	TTGCTCAACTGGATGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10638	FBgn0036290	FBtr0089322	1	1	2	92	3L	12494036	12494055	GAAGGCATTATAGGCAAGGT		59	12493889	12493981	TATGTCCCACAGCTTTGTG		59	NA	
Drosophila melanogaster	50	CG32103	FBgn0052103	FBtr0075982,FBtr0075984	2	2	3	80	3L	12406596	12406614	CAGGATCGATATCCACGAC		59	12405543	12406552	TGCTGAAGGAATTTCTCCG		59	NA	
Drosophila melanogaster	50	CG14128	FBgn0036218	FBtr0076036	3	1	1	60	3L	11873495	11873515	CATACAAAGAACCACTACCCA		59	11873536	11873555	TTACAAGTTAGTCCTTCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scyl	FBgn0041094	FBtr0076169,FBtr0076168	2	2	2	60	3L	11247414	11247433	CAGTTCATGAAGAGTTTGGC		59	11247455	11247474	TCTTGGTGATCGTATACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18490	FBgn0036149	FBtr0076167,FBtr0076166	1	2	2	154	3L	11219659	11219744	GATGCGTCAGTAAACAAGC		59	11219862	11219880	ACGTCATCGTTGATCTGTC		59	NA	
Drosophila melanogaster	50	As	FBgn0061469	FBtr0076186	3	1	1	95	3L	11200361	11200379	CTTCGAAATGGTTACGGAC		58	11200222	11200302	ACAAAGTCGAATTCACGAC		58	NA	
Drosophila melanogaster	50	l(3)01239	FBgn0010741	FBtr0076238	3	1	1	60	3L	11067090	11067110	ACTGTGATAGAAACTCTGGAG		58	11067050	11067068	CACCAATTTGACGAAAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aps	FBgn0036111	FBtr0076250,FBtr0076251,FBtr0076252	3	3	3	82	3L	10889924	10889944	TACGACAAGGATGGATTTAGG		59	10889708	10889881	GAGGTTACCAAGAGTACCTC		58	NA	
Drosophila melanogaster	50	CG32063	FBgn0045770	FBtr0076286,FBtr0076287	3	2	2	60	3L	10460034	10460055	CCGATCATTACAAAGTATTGGC		59	10460073	10460094	TTCGGCATAGTCCATATTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ilp3	FBgn0044050	FBtr0076373	2	1	1	60	3L	9794879	9794898	CGTGAACTTCAATCAGATCG		59	9794838	9794856	ACTCAACAGTCTTTCCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or67a	FBgn0036009	FBtr0076375	3	1	1	80	3L	9524083	9524163	AGAGGTTAATAGATGCTAGCG		59	9524205	9524223	TCTTGAATCGTTTGTCGGA		59	NA	
Drosophila melanogaster	50	CG3654	FBgn0036004	FBtr0076468	2	1	1	75	3L	9478089	9478169	ATTTCAGGGACATTCACGA		58	9478207	9478226	TCATAACCCAAGGCAAAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	PGRP-LC	FBgn0035976	FBtr0089491	3	1	3	89	3L	9338168	9338187	GTAAGATCAGAGATGACGAC		57	9340754	9340772	TCAGTATTAGTCCACCACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Cp19	FBgn0000358	FBtr0076573	1	1	1	75	3L	8723493	8723511	GAGTACAGCAAGGTGATCC		59	8723550	8723568	CATACTGGTTCTCTGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6282	FBgn0035914	FBtr0076636,FBtr0076637	3	2	2	104	3L	8608156	8608332	TACAAAGATCAACTGGAGTACC		59	8608396	8608415	GATGAACTTCAAAGCACTGG		59	NA	
Drosophila melanogaster	50	CG6673	FBgn0035906	FBtr0076654	3	1	2	113	3L	8514869	8514887	TGAAGATCAATACGGAGCA		58	8514715	8514733	CATCCAAAGCTGTCTTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7422	FBgn0035815	FBtr0110885	3	1	1	102	3L	7726857	7726878	GTTCAATATGTTCCTCAAGAGC		59	7726715	7726794	ATTGAGTTGAATGCCCTCC		59	NA	
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112696,FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112697,FBtr0112702,FBtr0112698	3	8	10	92	3L	7703513	7703532	GATACTCGTGGAAAGGTCAG		59	7703375	7703459	ATGGTCATTATCGAGAAGCA		58	NA	
Drosophila melanogaster	50	CG16998	FBgn0035795	FBtr0076829	3	1	1	60	3L	7532756	7532775	GATTACATCACTCTGGTTGG		57	7532715	7532735	GGAGTAGCTATCTGGATACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33277	FBgn0053277	FBtr0089852	2	1	1	86	3L	7438804	7438822	CAGTTCACCAATCCATTCG		58	7438869	7441175	CATGTTGACATCTAATGTCTGG		59	NA	
Drosophila melanogaster	50	CG14823	FBgn0035734	FBtr0076908,FBtr0076906,FBtr0076907,FBtr0076905	3	4	4	61	3L	7059522	7059543	CAAATACAGTGAGGATGATGTG		59	7059565	7059583	CATATTCCTGATGCTCCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	loj	FBgn0061492	FBtr0077053,FBtr0077052,FBtr0077051	2	3	3	124	3L	6088573	6088752	TACGTGTCCTTTAGTGTGG		58	6088839	6088858	GATACCTGATCCGTGTAGTC		59	NA	
Drosophila melanogaster	50	shep	FBgn0052423	FBtr0077172,FBtr0077175,FBtr0077173,FBtr0077174	2	4	4	80	3L	5156244	5156458	AGGTAGATGATCAGACTTCG		58	5156183	5156202	GTTTGTATGAGGTTACTCCC		57	NA	
Drosophila melanogaster	50	CG14959	FBgn0035427	FBtr0073050	3	1	3	167	3L	3267257	3267275	CTTCTATGCCGACATGGAG		59	3267543	3267622	AGGTAGAACCATTTGGGTG		59	NA	
Drosophila melanogaster	50	CG32280	FBgn0052280	FBtr0073030,FBtr0073031,FBtr0073032	1	3	3	124	3L	3168252	3168339	ATTGCCCTATTTGGTTGCT		59	3168426	3168445	CAATCCTATCGACGGTATCG		59	NA	InUTR
Drosophila melanogaster	50	CG1244	FBgn0035357	FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933	3	6	6	91	3L	2640505	2640584	GTCTGTGGAAGGATGTACC		59	2640639	2640657	CACTTGTAGGACAGGTGAG		59	NA	
Drosophila melanogaster	50	CG32301	FBgn0052301	FBtr0072875	3	1	1	91	3L	2245328	2245347	TCCTTTCCAGATTCCAAGAG		59	2245400	2245470	CATAGCCATTTGAAACACCA		58	NA	
Drosophila melanogaster	50	CG5691	FBgn0035297	FBtr0072854	1	1	1	97	3L	1962563	1962652	GCTAAATAGCCACTTCAATCTG		59	1962487	1962505	TTTCCTGAGATCTCTTCGC		59	NA	
Drosophila melanogaster	50	CG13937	FBgn0035287	FBtr0072862	2	1	3	108	3L	1881209	1881228	CTATTTGCTCATCTTCACGG		58	1878551	1881139	ATTAAAGGCCTCGAATCCTC		59	NA	
Drosophila melanogaster	50	CG12022	FBgn0035276	FBtr0072782	1	1	1	101	3L	1804303	1804321	AAATACCTCCCAACAGTCG		59	1804447	1804465	AACTTAACGTACAGCTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7971	FBgn0035253	FBtr0072807,FBtr0072806,FBtr0100219	1	3	5	60	3L	1664543	1664562	TGGAATTGGAGGACATTCTC		59	1663992	1664010	ACCTGCGACTTAATTTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	metl	FBgn0035247	FBtr0072813,FBtr0072814	3	2	2	82	3L	1638389	1638408	ACTCACAGGACATTATTGTG		57	1638326	1638345	ATAGCAATTGTCCAATACCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scf	FBgn0025682	FBtr0089942,FBtr0089940,FBtr0089941	2	3	3	60	3L	1299622	1299641	ATGGTTATTTGAACGAGGAG		57	1299664	1299682	GAATGATCGAAGTCATGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ptpmeg	FBgn0035133	FBtr0072545,FBtr0072542,FBtr0072544,FBtr0072543	1	4	4	80	3L	354438	354510	TATCACCATATGACTGCACC		59	354553	354571	CCATGTTTACGTAGTTGGC		58	NA	
Drosophila melanogaster	50	mri	FBgn0035107	FBtr0072481,FBtr0072480	1	2	3	129	3L	201355	201445	GGAGTATTGTCAGACCGTG		59	201538	201556	GTATCCCTCTATGCCACAG		58	NA	
Drosophila melanogaster	50	CG7047	FBgn0035103	FBtr0072535,FBtr0072534,FBtr0072536	1	3	3	135	3L	177250	177268	ATAAAGTGCAGAGTGTCCC		59	177067	177152	AATACTCGATGGTCTCAGTG		58	NA	
Drosophila melanogaster	50	snoRNA:Me28S-U1130	FBgn0086022	FBtr0114298	1	1	1	66	2R	14786962	14786980	TGAGGGAAATTCATGAGGG		58	14787010	14787028	AAATGAGTTTCCTGCTGGA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33436	FBgn0053436	FBtr0086428	1	1	1	62	2R	15623110	15623128	AATACATCGGTTCTCGTCC		59	15623066	15623084	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tina-1	FBgn0035083	FBtr0100389,FBtr0072411	1	2	2	60	2R	20828519	20828538	GGAGAACCTACTTAGTCTGC		59	20828478	20828496	GTATGGATGGGTGGTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MAN1	FBgn0034962	FBtr0072166,FBtr0072167	1	2	2	60	2R	19922795	19922813	GGAAGTTCAACTATCCCAC		57	19922836	19922855	GTTAGCCTTTCTTTCCTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Chi	FBgn0013764	FBtr0072192,FBtr0072191	3	2	2	81	2R	19920384	19920402	TCTTTGAGCTAAACAAGCG		58	19920321	19920339	AAGAACTCCGTGGTAAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Unc-89	FBgn0053519	FBtr0113464	2	1	2	81	2R	19900368	19900444	AAGTCAAGATGCTTTGTGC		58	19900305	19900326	TGAACTCTAGTATATCGATGGG		58	NA	
Drosophila melanogaster	50	CG16787	FBgn0034940	FBtr0072207	3	1	1	75	2R	19844214	19844232	CTACACAGTGCGGATAAGG		59	19844157	19844176	CTTGTACTTCCAGAACTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	thoc5	FBgn0034939	FBtr0072147	1	1	1	81	2R	19843448	19843468	GAAATGCCTCTATGGATTCTG		58	19843511	19843585	ACTCCATCATCTTGATCGC		59	NA	
Drosophila melanogaster	50	CG9850	FBgn0034903	FBtr0100329	1	1	2	122	2R	19647292	19648384	CATAACCAAACTCGATATGTGC		59	19646068	19646086	CTGTTCACCTTCTCCAGTC		59	NA	
Drosophila melanogaster	50	CG11300	FBgn0034901	FBtr0072090	2	1	1	78	2R	19639867	19639887	CAACCAGAGTAATCAGAATGG		58	19639926	19639945	TTACAATAGACGACGGTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	chrw	FBgn0015372	FBtr0072120	3	1	1	117	2R	19409666	19409684	CATAAAGAACACGCTGCAC		59	19408475	19409585	AGCTGTATCCCAGATTTGC		59	NA	
Drosophila melanogaster	50	CG4294	FBgn0034742	FBtr0071941	1	1	1	80	2R	18489503	18489522	AGCAGAAACGACATAAACTC		58	18489310	18489460	CGTCGATTAACCTGTAGTC		57	NA	
Drosophila melanogaster	50	Gp150	FBgn0013272	FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815	2	4	4	82	2R	18213224	18213297	AAGTCCAAGAGCAAATCCA		59	18213341	18213361	TCGTCGTAGTCATATTGAGAG		58	NA	
Drosophila melanogaster	50	CG30281	FBgn0050281	FBtr0071760	3	1	1	81	2R	18002685	18002704	TAAAGATCAGGCTGGAAGAG		58	18002745	18002842	GATGGGTTAATTGTCTCATGAC		59	NA	
Drosophila melanogaster	50	CG34370	FBgn0085399	FBtr0112595	1	1	1	81	2R	17892259	17892277	AGACATTCATCAGCGAGAC		59	17888295	17892215	TCGAATGTGAAGTAGGTCTG		59	NA	
Drosophila melanogaster	50	CG30290	FBgn0050290	FBtr0071672	1	1	1	91	2R	17579804	17579823	CATAGATCTAGGCAAGTGGG		59	17579877	17579952	TATTATCGCAAATCCCGGT		58	NA	
Drosophila melanogaster	50	CG34203	FBgn0085232	FBtr0112396	3	1	1	73	2R	17168922	17168943	GATTCAACAACTAAGTGATGCC		59	17168870	17168889	TTCTAAGGGTTTCACTGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pu	FBgn0003162	FBtr0071578,FBtr0071580,FBtr0071579	1	3	3	81	2R	17069023	17069041	TTCTACGGCAAAGTTTCCA		59	17069086	17069163	ATATTTCGACAATGCGTGC		59	NA	
Drosophila melanogaster	50	CG4050	FBgn0020312	FBtr0071637,FBtr0071638	3	2	2	60	2R	17012577	17012595	TATCAGCATGAGGAGTGAC		58	17012475	17012494	CTTCATAAGAATGTCGCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15226	FBgn0034550	FBtr0071564	1	1	1	116	2R	16677206	16677224	ATTTGGATGATGTCGAGCA		59	16676571	16676589	TTAGAGCCGAGACTATGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	bl	FBgn0015907	FBtr0086221,FBtr0086220	1	2	4	90	2R	16483146	16483164	TTCGCATACTGATTCCGAG		59	16483311	16485063	GTGGCTTTATACTGAGTCCT		58	NA	
Drosophila melanogaster	50	Fak56D	FBgn0020440	FBtr0086542,FBtr0086543,FBtr0114605,FBtr0086544	3	4	5	84	2R	15322745	15322828	TGGTATTAATACCGCTGAGAG		59	15322681	15322700	CCAAATCGTGAACTCTAGGT		59	NA	
Drosophila melanogaster	50	CG34045	FBgn0054045	FBtr0100100	2	1	1	118	2R	15220299	15220317	TGCACCAGGAAATACTGTG		59	15222469	15222488	TCTGGCTTATTGCCATACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	endoB	FBgn0034433	FBtr0086558,FBtr0086559	1	2	4	80	2R	15196010	15196085	CCAATGAGGTGATCTTCGT		59	15195948	15195966	GACCCTTCAATAGACCCTG		59	NA	
Drosophila melanogaster	50	CG15067	FBgn0034331	FBtr0086728	3	1	1	110	2R	14273055	14273073	AAGAGCCTGACGTTATTGG		59	14272908	14272926	AGTCGTTTGATCATGGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sbb	FBgn0010575	FBtr0086767,FBtr0086766,FBtr0086765	2	3	3	179	2R	14175232	14175640	CAAATACGAAACAACTAGCTGG		59	14175074	14175092	ACTTCTCAATATCCGCGTC		59	NA	
Drosophila melanogaster	50	CG5084	FBgn0034288	FBtr0086804	1	1	1	226	2R	13906667	13906685	CATCTACCTGAACACCACC		59	13906875	13906953	TCTTGTCGAAAGTGGACAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6355	FBgn0028741	FBtr0089554,FBtr0089555	2	2	2	120	2R	13663153	13663233	ATCTGGTTCAGATGTCCTG		58	13663051	13663069	GAATAGTCCATGACGAGGT		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14478	FBgn0028953	FBtr0086921,FBtr0086922	2	2	2	60	2R	13351185	13351203	GTAGGTTCAATCTGGACGG		59	13351227	13351245	TAGTTGCGTAAATCGTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k01209	FBgn0022029	FBtr0086914,FBtr0086912,FBtr0086913,FBtr0086915	1	4	4	92	2R	13312000	13312086	CGGTTAAGAAGGGACATCTC		59	13312140	13312159	GTAATTGCAATAGGAGGGCT		59	NA	
Drosophila melanogaster	50	CG15609	FBgn0034180	FBtr0114627,FBtr0114625	1	2	6	103	2R	12896440	12897016	CAATCATTGTGAGACCGAG		58	12896355	12896373	TATTTAGCTGCATCTGTCG		57	NA	
Drosophila melanogaster	50	Menl-1	FBgn0029154	FBtr0100116,FBtr0100115,FBtr0100114	3	3	3	92	2R	12305201	12305279	ATTCTCAGATGGAAAGGCT		58	12305127	12305145	TTGTTAGCTTGACCAGGAG		59	NA	Nonspecific
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087272,FBtr0087270,FBtr0087273,FBtr0087271	2	4	7	89	2R	11848682	11848827	CCAATTCGAGACACATATTCTC		58	11848614	11848632	GATCCATTGGATTTCGGGA		59	NA	
Drosophila melanogaster	50	sli	FBgn0003425	FBtr0087304,FBtr0087302,FBtr0112831	3	3	5	138	2R	11773781	11773799	GACCGTGATATACGAGACG		59	11772978	11773607	ATTGTTGGAGATGTCCAGTC		59	NA	
Drosophila melanogaster	50	fus	FBgn0023441	FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343	2	4	6	110	2R	11555363	11559507	CAACTGGACAGATCGTAGG		59	11555271	11555290	TGTTATTGGTGACACTCGAG		59	NA	
Drosophila melanogaster	50	CG12424	FBgn0033987	FBtr0087409,FBtr0087410,FBtr0087411	2	3	3	101	2R	10865415	10865739	TGGTGCTCATTAAGGTTCG		59	10865804	10865822	TGTAATGGCTGAAGGTCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12858	FBgn0033958	FBtr0087476	1	1	1	113	2R	10631362	10631380	CATGAACTACGGCATTGAG		58	10631205	10631287	TCTGGATATAGATTGGGATCC		57	NA	
Drosophila melanogaster	50	Tfb1	FBgn0033929	FBtr0087548,FBtr0087549,FBtr0087550	1	3	3	104	2R	10251345	10251363	TAACCAGCGATGAGTTCTG		59	10251489	10251507	TTATGTCAGCCAGAAAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6337	FBgn0033873	FBtr0087646	3	1	1	60	2R	9722520	9722539	TACTAACCATCGACAGTGGA		59	9722479	9722500	GTTTGAAAGTCCACTAGATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6145	FBgn0033853	FBtr0087687,FBtr0087685,FBtr0087686	2	3	3	60	2R	9426355	9426492	AGCTAGTGACCTTTAAAGATGG		59	9426316	9426336	CAGACGATAAAGTCAATCCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4734	FBgn0033826	FBtr0087754	2	1	1	127	2R	9185121	9185140	GATAGTACCAACGATCTGGA		58	9184825	9185032	GGATTGTTGCTCGATATGAC		58	NA	
Drosophila melanogaster	50	CG4734	FBgn0033826	FBtr0087754	3	1	1	127	2R	9185122	9185141	CGATAGTACCAACGATCTGG		59	9184826	9185033	GATTGTTGCTCGATATGACC		58	NA	
Drosophila melanogaster	50	sca	FBgn0003326	FBtr0087855,FBtr0087856	2	2	2	60	2R	8687283	8687503	AATGAAGAATAAGCTCACCC		57	8687526	8687544	GACATTCTGATGATGTGGT		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG33012	FBgn0053012	FBtr0087909	2	1	2	142	2R	8255912	8256259	TAATGAAGGCAAGTCTGGA		58	8256365	8256383	ATTGGATATACTGCGGACC		58	NA	
Drosophila melanogaster	50	CG11883	FBgn0033538	FBtr0088284,FBtr0113063,FBtr0088283	2	3	3	91	2R	6527407	6527426	CAATCATACAAGTTGTGCGT		59	6527480	6527561	TCATCATCCATCAGCACAG		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	1	26	26	80	2R	6421013	6421095	AGTCCCTACTTTGCTACCT		59	6420951	6420970	CTCTTGGTACTTGACATCCT		58	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	3	9	9	198	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349188	6349206	CTTAGTACAGTCCACAGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Mef2	FBgn0011656	FBtr0088443,FBtr0088447	1	2	6	105	2R	5805515	5805533	AATCTTAGCGTACTGAGCC		59	5805022	5805446	CATACTTATCGTGCCCTGG		59	NA	
Drosophila melanogaster	50	CG30010	FBgn0050010	FBtr0088374	3	1	1	70	2R	5751948	5751966	GGAGAACGTTTAGAGTTGC		58	5751999	5752018	TTACAATCCTCGTTCATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Prosalpha7	FBgn0023175	FBtr0089997,FBtr0089998	1	2	2	143	2R	5734692	5734764	TTTCCATCATTCTCGCCTC		59	5734400	5734588	CTTTGTAGATGATTTCACCAGC		59	NA	
Drosophila melanogaster	50	CG1814	FBgn0033426	FBtr0088523,FBtr0088521,FBtr0088522	1	3	3	80	2R	5468497	5468576	AATCTACTACGAGGGTTCG		58	5468620	5468638	TGATCTCCGAAATAGAGCA		57	NA	
Drosophila melanogaster	50	CG13744	FBgn0033363	FBtr0088666	2	1	1	184	2R	4902865	4902885	GATAAATGTCGAGATCAAGGC		58	4902064	4902145	CGTTATGATAAATTCCTGGCTG		59	NA	
Drosophila melanogaster	50	Dmn	FBgn0021825	FBtr0088641	2	1	1	128	2R	4780404	4780422	GAACTATACGACATCGCGA		59	4780579	4780598	AATCTCTGCGATGATCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14752	FBgn0033307	FBtr0088691	3	1	1	95	2R	4478001	4478019	TTATCAGTCACCACCTGAC		58	4478077	4478528	TGAATACTTTCAGGACGGAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Pabp2	FBgn0005648	FBtr0088786,FBtr0088785	1	2	2	182	2R	4020283	4020454	GGCGTCAAATAAAGGTAATGTC		59	4020662	4020680	AAGGAGCGTAGTAATTGGC		59	NA	
Drosophila melanogaster	50	CG12824	FBgn0033222	FBtr0088830,FBtr0113050	1	2	2	105	2R	3678248	3678269	CTACTTAATGGGTTACTCATCC		57	3678388	3678406	ATAGAATGCCATTCCGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1602	FBgn0033186	FBtr0088960	2	1	1	86	2R	3405555	3405573	CTAGCAACGATGAAGAAGG		57	3405430	3405448	CTATCAGGTCGGTAGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088988,FBtr0088989,FBtr0088990	1	3	9	91	2R	3362872	3362952	AATAAATGCAGGAGATCGG		57	3361301	3361319	GTTGTGATGTGAAGATCCC		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111090,FBtr0089020	3	2	60	60	2R	3249249	3249267	GAGAAACCCGATTAAGTGC		58	3238787	3249225	TTAAATCCCACAGGCTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111087,FBtr0111059,FBtr0111074	1	3	60	93	2R	3244596	3249235	TTGGTCATCACAGAACCTG		59	3244521	3244539	TTAAGGCTTGACCCATAGG		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111079	3	1	60	92	2R	3245786	3245804	AAGAGTTCGAACAATGGAG		57	3236472	3245731	TTGTACCATCTGTTAATGGG		57	NA	
Drosophila melanogaster	50	CG9454	FBgn0033112	FBtr0086194	1	1	1	60	2R	2767918	2767939	CCTATATGTTATGAAGGGTCTC		57	2767879	2767898	CTTCTGCTCTAGTATGTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3271	FBgn0033088	FBtr0086118,FBtr0086119	3	2	2	108	2R	2561684	2561772	ATATTCGCAGTGACGAGTC		59	2561842	2561862	AGATGATGGAATAGGCAAAGG		59	NA	
Drosophila melanogaster	50	CG32838	FBgn0052838	FBtr0086066	2	1	1	62	2R	1342303	1342321	TTGAAGGATACTGTTGCGG		59	1342347	1342365	GTTATCTGCACGAAATCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6t2Psi	FBgn0041336	FBtr0081529	3	1	1	60	2L	21284091	21284110	AATGTGTTGAATGTGGAGAC		58	21284050	21284068	TTACGCTCGTATAGCTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17018	FBgn0039972	FBtr0085957	1	1	3	103	2L	22325838	22363439	TTTCTATAGATGCTGGCCG		59	22363506	22363524	GCGATAATGTCGATAGCTG		58	NA	
Drosophila melanogaster	50	CG11630	FBgn0032964	FBtr0085909	3	1	1	60	2L	21782661	21782679	TAACAATCGTCGTCTGGTC		59	21782619	21782640	GTTAGGTAAGTTCTGGAGAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr39a	FBgn0041244	FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510	1	4	4	89	2L	21297292	21297310	AAACAGCAAAGATGCTGAC		58	21297471	21297489	TCTGTCGAAGGTTCTTGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hr39	FBgn0010229	FBtr0081481,FBtr0081480,FBtr0081479	3	3	4	154	2L	21256008	21256026	AAGATAACCCTATCGCAGG		58	21257042	21257115	AACTCTGTCGTATCTGACTG		58	NA	
Drosophila melanogaster	50	CG34136	FBgn0083972	FBtr0110944	1	1	1	68	2L	21097208	21097226	CTGTCGTTTCCCTACTGTG		59	21097258	21097276	CATTCACAATTGGCACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9264	FBgn0032911	FBtr0081463	3	1	2	82	2L	21080465	21080483	ATCCTATTCAGTGGCTGTG		59	21080526	21080610	CTAGGTATCAGCAGAATGAGTC		59	NA	
Drosophila melanogaster	50	CG40169	FBgn0058169	FBtr0100179	3	1	2	213	2L	20238606	20238626	CGCCTTTAAGTCTTCTTTGTC		59	20245418	20245436	GTGTACCAATTGTGCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10462	FBgn0032815	FBtr0100351,FBtr0100352,FBtr0081325	3	3	3	92	2L	19733222	19733240	GACAAACGTTTCCGAACTC		59	19733055	19733167	GTCTAACGAGCATATCTTGC		58	NA	
Drosophila melanogaster	50	CG10263	FBgn0032812	FBtr0081264,FBtr0081263	2	2	3	159	2L	19581472	19581490	ATCAATCACAGACATGTGG		57	19581331	19581349	TTTAGGAGCCATAGCTACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10026	FBgn0032785	FBtr0081237,FBtr0081236,FBtr0081238	3	3	3	89	2L	19457157	19457234	GCTCTACTAGTGACCTCCA		59	19457287	19457305	AAATATCTTGAATGCCGCG		58	NA	
Drosophila melanogaster	50	l(2)37Ce	FBgn0086446	FBtr0081157	2	1	1	62	2L	19132626	19132644	ATAGAGGAATATGCCACCG		58	19132670	19132688	ATTGTTGACATCCCAAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31792	FBgn0051792	FBtr0081137	2	1	1	93	2L	18998785	18998806	GGACACCTTTATTCAGTTTACC		58	18998860	18998932	AGCGATTCCAATCTCTTGG		59	NA	
Drosophila melanogaster	50	CG15167	FBgn0032709	FBtr0081101	3	1	1	274	2L	18740440	18740460	CCAGAGATCTACCTATTAGCG		58	18740696	18740714	TTCCACTTCGAGAATCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31746	FBgn0051746	FBtr0081060	2	1	1	88	2L	18193058	18200634	ATATCAGCACAGTTCTGGG		59	18192988	18193006	ATTACATCGATCTGCTCCA		58	NA	
Drosophila melanogaster	50	CG5758	FBgn0032666	FBtr0081036,FBtr0081035,FBtr0081037	1	3	3	80	2L	18128000	18128021	CAATCAGGTGTTCATTATCTCC		58	18128062	18128144	TTATCCTTGTGCATCTGGT		58	NA	
Drosophila melanogaster	50	CG5043	FBgn0032636	FBtr0080980	1	1	1	81	2L	17435198	17435216	CTTTGTTGACCAGTTACGC		59	17435261	17435339	AAGCAATTTGCTGAACTGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG4930	FBgn0028515	FBtr0080824	1	1	1	61	2L	16258274	16258292	ATCCCGTTAAGGATTACCA		57	16258317	16258335	ATCCACGATTTCGTCTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mol	FBgn0086711	FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015	1	5	5	81	2L	14984076	14984208	CTAGTCATATTAATCACTCGCC		58	14984016	14984034	GTGAGAAGGCTTTGTATGG		58	NA	
Drosophila melanogaster	50	HDC02577	FBgn0086609	FBtr0080673	2	1	1	60	2L	14802507	14802526	ATTAGTAGCAGTTCTCTGGA		57	14802549	14802567	CAATTGTCTCCAATTCCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	smi35A	FBgn0016930	FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289	3	5	5	91	2L	14195795	14195814	CGGATGGATCTCATAATGTC		57	14189224	14195741	CAGGTTCAAGCTCATTAGC		58	NA	
Drosophila melanogaster	50	CG15638	FBgn0028943	FBtr0080516	1	1	1	138	2L	13535729	13535747	GATTATAATCCACCGCCCA		59	13535609	13535627	AATTGGAGGTTCCTTTGGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG33305	FBgn0032351	FBtr0080221	3	1	1	60	2L	11159922	11159940	ATCGCGATGAATACAGTCC		59	11159880	11159899	ATGGCATTAAGCATTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7456	FBgn0032258	FBtr0080038	2	1	1	80	2L	10487109	10487128	TCATGAAGAACTCCGATCTG		59	10486988	10487069	CCTCCATGAAATATCTTTCCAG		58	NA	
Drosophila melanogaster	50	CG4946	FBgn0032203	FBtr0079983	3	1	1	146	2L	10265920	10265940	GATATGAGTACTTATGGGCCG		59	10266104	10266209	GAAATGGAACATCCGTGGA		59	NA	
Drosophila melanogaster	50	chico	FBgn0024248	FBtr0080088	2	1	1	82	2L	10244842	10244918	ATAACTATGGTTTCGGCAGAG		59	10244780	10244798	GTACGTTTGATTGCTGGAC		59	NA	
Drosophila melanogaster	50	CG13126	FBgn0032168	FBtr0079892	2	1	1	144	2L	9952872	9952890	AATCCGATAGCTCAAGCTC		59	9952687	9952764	GAATAGGCAGACTTTCCGT		59	NA	
Drosophila melanogaster	50	CG13125	FBgn0032163	FBtr0079899,FBtr0079898	1	2	2	133	2L	9923290	9923373	CAGTTGAGGATTCTACCCT		57	9923175	9923194	AATATCCGTCATATTGTCGG		57	NA	
Drosophila melanogaster	50	CG9525	FBgn0032080	FBtr0079786	2	1	1	60	2L	8961802	8961821	GGCAGAGGATCTACAATCAG		59	8961761	8961779	TGGTGCATATGTCTTAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34398	FBgn0085427	FBtr0112648,FBtr0112649	2	2	2	86	2L	8927410	8927428	CATAGATAGTGCCGACGTC		59	8927478	8927561	CTGGTGATTCCACTATCCC		59	NA	
Drosophila melanogaster	50	grk	FBgn0001137	FBtr0079708	3	1	1	82	2L	8431930	8431949	AACACAGTCTTCCATTCCTG		59	8431732	8431885	ATGTAGTCACCATTCCAGC		59	NA	
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079620,FBtr0079621	1	2	4	89	2L	8245213	8252236	AGATACCAGCTCCTAATGTC		58	8245143	8245161	TAATCGTATAAGCCGGAGC		59	NA	
Drosophila melanogaster	50	CG8668	FBgn0031988	FBtr0079576	3	1	1	80	2L	8131848	8131866	CAATGTTATGGCGGATGAG		58	8131910	8131988	CTACTGTTGATGTTGCCTG		58	NA	Nonspecific
Drosophila melanogaster	50	Cka	FBgn0044323	FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538	3	4	4	100	2L	8036254	8036272	ACATCAATGGAAACGAGAG		57	8036394	8036413	GTCCACGATTATTTCATCGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	pes	FBgn0031969	FBtr0079553,FBtr0114550,FBtr0079552	3	3	3	119	2L	7988318	7988403	CCGGGTATTACCTTGTATGAG		59	7988219	7988237	GACAATTAGCGGAACAAGC		59	NA	
Drosophila melanogaster	50	CG7115	FBgn0027515	FBtr0079523,FBtr0079524	2	2	2	126	2L	7823093	7823467	GAGGATAGGTTTATTATCGAGGAG		59	7823552	7823570	AGATGTTCTTCACCAGCAC		59	NA	
Drosophila melanogaster	50	CG31904	FBgn0051904	FBtr0079502,FBtr0079501	3	2	2	284	2L	7735484	7735566	ATTTAAAGGCATTGGCTACG		58	7735106	7735124	GTGTAGGACAGTCCATGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9526	FBgn0031815	FBtr0079258,FBtr0079259	2	2	2	86	2L	6457037	6457055	CTACGATGTGGAATTGCAG		58	6457102	6457347	TAATAGGGACCTGTAAGAACTC		58	NA	
Drosophila melanogaster	50	CG31639	FBgn0051639	FBtr0079208,FBtr0079207	1	2	2	112	2L	6154021	6154656	AATTTAATACCAGCTCGGAC		57	6153928	6153946	GATTTCCATCTGCCTTTCC		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Vm26Aa	FBgn0003979	FBtr0079239	1	1	1	249	2L	5960241	5960259	ATGAAATCCTTCGTGTGCA		59	5960010	5960028	TGAACAGGTAGTTCTTGGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Hel25E	FBgn0014189	FBtr0079123,FBtr0079125,FBtr0079124	1	3	3	82	2L	5539759	5539779	CTTAACGAAGTACAGGATCGT		59	5539635	5539717	CGTCCCTCAATGTATGTAGAG		59	NA	
Drosophila melanogaster	50	Cg25C	FBgn0000299	FBtr0079002,FBtr0079001,FBtr0079003	2	3	3	106	2L	5034886	5034904	GAGACATTGGTCCAAGAGG		59	5034973	5035074	TCCAATAAGACCTTGACGTC		59	NA	
Drosophila melanogaster	50	mRpL24	FBgn0031651	FBtr0079058	1	1	1	82	2L	4944855	4944935	AACCAATTGAGGACTGGAG		59	4944791	4944809	GACAATTCCCTGCTTTCCT		59	NA	
Drosophila melanogaster	50	Rbp9	FBgn0010263	FBtr0077636,FBtr0077635	1	2	7	153	2L	2955495	2961223	TTATCCATCACAACAGCGT		59	2961340	2961358	CTGTTGGTCACATTGTTGG		59	NA	
Drosophila melanogaster	50	lilli	FBgn0041111	FBtr0077634,FBtr0077633,FBtr0077632	3	3	3	292	2L	2947157	2947175	GACATTCCGTCGAGTAGTG		59	2947431	2947622	TTGTTGACATCCTTCTCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2843	FBgn0031452	FBtr0077712	1	1	1	118	2L	2745435	2745453	GAGTGCTGAGCAATAATGG		58	2745597	2745615	GGACTTGTCGATCTTACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7337	FBgn0031374	FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012	1	5	5	129	2L	1937464	1937482	CACAATACGGAGAATGGGA		59	1937575	1938517	TATGGCCTACATTCTCCAG		58	NA	
Drosophila melanogaster	50	CG17660	FBgn0031356	FBtr0077912	2	1	1	82	2L	1708395	1708472	CGACTGAGGAGGAATATGG		58	1708331	1708349	ATGACGGAAGCGATAACAG		59	NA	
Drosophila melanogaster	50	chinmo	FBgn0086758	FBtr0077879,FBtr0077877,FBtr0077880,FBtr0077878	1	4	4	94	2L	1690675	1690693	GTTTCTCGTCTAACTTGGC		58	1690751	1694237	TTTGAATACTACGCCATCG		57	NA	
Drosophila melanogaster	50	GABA-B-R3	FBgn0031275	FBtr0078001	3	1	2	106	2L	756070	756676	ATAGTGGACTGAACAATCAC		57	756745	756763	GATACTGATCCTGGAACCA		58	NA	
Drosophila melanogaster	50	Ptth	FBgn0013323	FBtr0078073	2	1	1	82	2L	576134	576154	ACGATTTCTATGAGGATCTGG		59	576014	576091	GAGCTCATTCGTAACTTTGC		59	NA	
Drosophila melanogaster	50	nAcRbeta-21C	FBgn0031261	FBtr0078064,FBtr0078065	2	2	2	80	2L	545556	545825	CTGAATCTCCGATGGAGAG		58	545869	545887	GGACTTCAAAGTGATCTGC		58	NA	
Drosophila melanogaster	50	CG3625	FBgn0031245	FBtr0078136,FBtr0078135,FBtr0113009	1	3	3	88	2L	284780	284798	TATCGACAGGGAGCTAGTC		59	284173	284191	AAACCACTATGTTGGTGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17078	FBgn0086855	FBtr0078138	3	1	1	80	2L	275244	275329	GGCTCTAGTCAATTCACCC		59	275182	275201	ATCTGGCCTTCAATGTAGAC		59	NA	
Drosophila melanogaster	50	CG3436	FBgn0031229	FBtr0078120,FBtr0078119	1	2	2	67	2L	156467	156485	AGAAGGACATGAGGGAGAG		59	156514	156534	CAGAAGAAAGCAATAACTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34330	FBgn0085359	FBtr0112532	3	1	1	83	X	18962657	18962675	CTTCCAAGTGAAACAGGAG		57	18962592	18962610	AACTGCCTAATCGACACAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074573,FBtr0074575,FBtr0074574,FBtr0074571,FBtr0074570	2	5	6	80	X	18286506	18286591	TCATCAAACATCACCAGGT		58	18286444	18286463	TATTCAGGACATAGACACGC		59	NA	
Drosophila melanogaster	50	CG15059	FBgn0030905	FBtr0074584	3	1	2	73	X	18153248	18153266	AATGGGTTGTGAAATGGGT		59	18153130	18153212	GATTGTTCTTTCGGGATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arpc3B	FBgn0065032	FBtr0074410	3	1	2	176	X	16999010	16999524	GAAGTTAAGTCGGAGGTGG		59	16998852	16998870	GTATATTCCGTTCAGCGGA		59	NA	
Drosophila melanogaster	50	CG6340	FBgn0030648	FBtr0074039	2	1	4	283	X	15377318	15377337	CAACAATAACTATGGCAGCG		59	15379284	15379365	CCTTGCTGTGATTCTTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9514	FBgn0030592	FBtr0073980	1	1	1	60	X	14782507	14789809	ATGGATTGGAAGTATCGCA		58	14782465	14782483	GTTTGTCCTTCATTGCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9517	FBgn0030591	FBtr0073981	1	1	2	80	X	14771623	14771641	CGGCATGAATTTCTATCGC		59	14771332	14771580	TCATACTGACGACGTATGAC		58	NA	
Drosophila melanogaster	50	CG12539	FBgn0030586	FBtr0073987	1	1	1	121	X	14738707	14738725	ACTTGCTCATCTTCACGAC		59	14738548	14738622	ATCTCTGGGTACATTCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11071	FBgn0030532	FBtr0073829	1	1	1	63	X	13749149	13749283	TAGTACAAACAAGCGGTCG		59	13749104	13749122	ATGATGGTGTGGATAGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4332	FBgn0030456	FBtr0073726	1	1	1	60	X	13049970	13049988	CGGACACCAATGTATACCT		58	13050012	13050109	AAGAGCATATGGATGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1837	FBgn0030329	FBtr0073551	1	1	1	94	X	11612715	11612733	TTGACCTTACCGAAGACAC		59	11612791	11612870	CAAACGCTGACAATGACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Met	FBgn0002723	FBtr0073521	3	1	1	109	X	11512179	11512267	TATATGAAGGATGAGGTGCG		59	11512339	11512357	TAGTCACTGTTGCAATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11727	FBgn0030299	FBtr0073546,FBtr0073547	1	2	2	87	X	11331116	11331134	ATCATACTTGGAGGTCTCG		58	11330817	11331065	GGATACGTTATTCTCCTGC		57	NA	
Drosophila melanogaster	50	Ant2	FBgn0025111	FBtr0073426,FBtr0073425	3	2	2	209	X	10674143	10674238	TACAAATCGGTATTCCTCGG		59	10673656	10673677	GATCACCTTCATTAGACAATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12637	FBgn0030224	FBtr0071504	1	1	1	60	X	10566719	10566738	CATTTCGAGGTGATTCTCCA		59	10566678	10566698	GAATAATAGCCGGATACACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15252	FBgn0030167	FBtr0071426,FBtr0112970	1	2	2	141	X	9873643	9873809	ACTTTCTGAGGCTCATGAC		59	9873403	9873538	AACATTTGGCGACTTTACG		59	NA	
Drosophila melanogaster	50	CG18262	FBgn0030012	FBtr0071158	1	1	1	78	X	8048120	8048138	CAATGTCCATGCTGTATCG		58	8048180	8048198	CTTCTTCCGTTGAAACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33669	FBgn0053669	FBtr0091648	1	1	1	78	X	6294003	6294080	TTCTTGACTACTCCGAAGC		59	6293943	6293961	TTCTTAGAACGGGAAAGCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	rux	FBgn0003302	FBtr0070889	2	1	1	67	X	5931002	5931110	AAGAACATAAGGAGACGCC		59	5930953	5930971	TATGGTCCCATCATCTACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ec	FBgn0000542	FBtr0070606	2	1	3	155	X	3730818	3730836	AAACATCGGCAATCAATGC		59	3735438	3745002	AAAGTTCCTTTAGAGCGCA		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG14422	FBgn0029645	FBtr0070555	3	1	1	60	X	2837947	2837965	AACTTCCACAAACCCTACC		59	2837989	2838007	GTCGACCAAATTGTTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13762	FBgn0040333	FBtr0070444	1	1	1	77	X	2517530	2517628	GGTGATTGACTACCTCTCG		59	2517471	2517489	TTGTACAGCGTAAAGTCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41038	FBgn0085559	FBtr0113972	1	1	1	60	U	7691141	7691159	TCAAATGACAGAAGTGCCA		59	7691099	7691118	TGCTTGTGAACTTGATTGAG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-3186	FBgn0086662	FBtr0091697	3	1	1	62	3R	1423820	1423838	CTTGTTCAACTTGCAGCTG		59	1423776	1423796	CATCCAAGAGTCAGTATACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or98P	FBgn0067407	FBtr0085225	1	1	1	63	3R	23670943	23671077	TATATCGTGGCTAAGCTGG		58	23671104	23671122	ATCGCTCAGAAATGTTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hdc	FBgn0010113	FBtr0085620,FBtr0085621,FBtr0085619	1	3	3	81	3R	26184088	26184106	ATTCGATCGCTATCCACTG		59	26184150	26185703	GTATTTAACCTCGATGCAGC		59	NA	
Drosophila melanogaster	50	Cnx99A	FBgn0015622	FBtr0110909,FBtr0085438,FBtr0110908,FBtr0085437	2	4	4	129	3R	25143653	25143673	TATACCATCATGTTTGGACCG		59	25143220	25143562	CTTCCAAACGGTTCTTTGG		59	NA	
Drosophila melanogaster	50	CG14259	FBgn0039483	FBtr0085104	1	1	1	75	3R	22920754	22920772	CAATCTGACTGACCTGGTG		59	22920810	22920953	AAAGTCTTTCTTGCTCACAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31081	FBgn0051081	FBtr0085033	2	1	1	76	3R	22460650	22460723	TGTTTCTTACGTTGTTGGC		58	22460763	22460781	CACAGGTCCTCCATAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CHKov2	FBgn0039328	FBtr0084849	3	1	1	109	3R	21156227	21156245	AGCACCAGAAATTACTCGA		58	21156086	21156155	ATAGTCGCTTATGAGAACGA		58	NA	
Drosophila melanogaster	50	CG31457	FBgn0051457	FBtr0084405	3	1	1	79	3R	18952756	18952833	TTACTGGACGATGAACCAG		58	18952695	18952713	ATGTTGATCTCAACCATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31178	FBgn0064912	FBtr0084138	2	1	1	61	3R	17699966	17700050	GTGATGCGAATAGCAATGC		59	17700074	17700093	CGATTGATAGTGGATAACGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mvl	FBgn0011672	FBtr0089521,FBtr0089522,FBtr0089523	1	3	3	80	3R	16882559	16883305	GCTATGAGTACATTGTATCAGC		58	16882500	16882518	AATTGCAGTTAGAGCACCA		59	NA	
Drosophila melanogaster	50	CG17267	FBgn0038821	FBtr0114503,FBtr0083931	2	2	2	64	3R	16564042	16564327	ATTGGCTCCAGAAACTATCC		59	16563997	16564015	CTTCTGTATCCACCACGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7702	FBgn0038638	FBtr0083664	2	1	2	300	3R	14495417	14496875	ACTATTCTATACTGCGAGGC		58	14498585	14498603	AATGTCCTCATGTTGGCTC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	l(3)05822	FBgn0010877	FBtr0083596,FBtr0083595	1	2	2	64	3R	14115518	14115536	TTGTTTGTATCACTTCCCG		57	14115414	14115490	TAACCAATTCGTTCTCCTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG7131	FBgn0038598	FBtr0083598	1	1	2	107	3R	14113252	14113327	AAAGCTGTCCTATCAACCG		59	14113163	14113181	TGTTTCTGAGTGGTCATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7655	FBgn0038536	FBtr0083479	1	1	1	146	3R	13508837	13508915	TTATTTGATCGTCAACTGGC		58	13509024	13509042	AGATCCATCACCAAACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31190	FBgn0051190	FBtr0089444,FBtr0113397,FBtr0089443,FBtr0113398	2	4	4	80	3R	13311060	13312991	TGAATGTTTACGGACCTCC		59	13310998	13311019	GACAGTGCACAATTATATCCTC		58	NA	
Drosophila melanogaster	50	kuk	FBgn0038476	FBtr0083398,FBtr0083397	3	2	2	60	3R	12908691	12908709	TGGCAAAGATAAGTCACAG		57	12908731	12908751	AGATTTCTCTACCTTCTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4520	FBgn0038355	FBtr0083167	1	1	1	112	3R	11571116	11571134	GTGATGAGATCGGTATCCG		59	11571210	11571285	TAATGGGAGTAACGTGCTG		59	NA	
Drosophila melanogaster	50	btsz	FBgn0053555	FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530	3	5	5	111	3R	10634167	10634187	GCAGTACAACTATAAGCTGAG		58	10634011	10634096	TAGATACACCTTAACGTAGGG		58	NA	
Drosophila melanogaster	50	Ipp	FBgn0016672	FBtr0082865	1	1	1	230	3R	9784908	9784926	AATTTCACCAACCAACTGG		58	9785120	9785422	GTCAATTGGATCGATCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9611	FBgn0028487	FBtr0112937,FBtr0082846,FBtr0112939,FBtr0082847,FBtr0112938	1	5	5	83	3R	9521483	9521501	TTGAGCACATTGGATTTGC		59	9521355	9521439	CTCCAAGTGAGTTATGTTTGTC		59	NA	
Drosophila melanogaster	50	CG10126	FBgn0038088	FBtr0082686,FBtr0082687	1	2	2	60	3R	8681482	8681557	TGGATGGAAAGATAACCCG		59	8681440	8681458	ATTGAGGCACTAATGGTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14711	FBgn0037922	FBtr0082416	1	1	1	87	3R	7449944	7449962	ATATCTACTCCAAGCGAGC		58	7450013	7450093	GATTTGCTGCATATTTCGC		58	NA	Nonspecific
Drosophila melanogaster	50	CG14693	FBgn0037837	FBtr0082300,FBtr0082301	3	2	2	127	3R	6637918	6638520	GACACCCACATTTGAAAGC		59	6637809	6637828	GAAGTATCAGGCATTGAACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Osi5	FBgn0037413	FBtr0078595	3	1	1	77	3R	2053672	2053690	TATCCTTCTATCTGCGCAC		58	2053731	2054174	CTTCTGAAACTTGGGACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32448	FBgn0052448	FBtr0078449	1	1	1	129	3L	21821272	21821290	TTAGTGGAGAAGACGACGA		59	21821095	21821179	TAATCTTGTTCGGCTTGGT		59	NA	
Drosophila melanogaster	50	Aef1	FBgn0005694	FBtr0078349	2	1	3	127	3L	21426793	21428134	AATGGAAAGGCACTAGCAG		59	21428225	21428305	GGGATTAGGTAGTCTCGGT		59	NA	InUTR
Drosophila melanogaster	50	CG32425	FBgn0052425	FBtr0078205,FBtr0078202,FBtr0078203	1	3	5	164	3L	20505333	20505351	ATCATCAATGATGAGCGCT		59	20505479	20505632	GATCACTGGTAGCTTTCCC		59	NA	
Drosophila melanogaster	50	CG4306	FBgn0036787	FBtr0075117	3	1	1	81	3L	18455624	18455820	AGTCAAGAAGGCGTTAGTC		59	18455561	18455580	CAGGAGTTGATTCAGATTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TpnC73F	FBgn0010424	FBtr0089586	1	1	2	180	3L	17039367	17039458	TCGATGAAGATCTTACACCC		58	17039665	17039683	TTACTGTCCTCATCGACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Eig71Ek	FBgn0014851	FBtr0075575	2	1	1	121	3L	15654549	15654570	CAGAATAGGACGATTTGATGAG		58	15654652	15654726	AAATCAGAAGACAGGTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17177	FBgn0036440	FBtr0075710	1	1	1	80	3L	14692403	14692785	ATCGGGAGATAATTCACCG		58	14692341	14692359	CAGTGAACTCACCTTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10222	FBgn0036356	FBtr0075861	3	1	1	60	3L	13404968	13404986	CGATCTGCTAAAGAAGCAC		58	13404926	13404945	GACGTCCGTATAATAGTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14126	FBgn0036223	FBtr0076068	1	1	1	78	3L	11929751	11930073	GCAACTATATCTGCAGTGC		58	11929691	11929709	CTGGATAGAAAGTGGAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6038	FBgn0036198	FBtr0076123	3	1	1	232	3L	11704243	11704333	CTAATTCACGAGGGCTCTG		59	11703973	11703991	CATCCTTCGTATTTGTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33267	FBgn0053267	FBtr0089845	1	1	1	145	3L	11557925	11565512	AACTACAGATGATGCCACC		59	11565621	11565639	TGCGCTTATAGTGGATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34237	FBgn0085266	FBtr0112431	2	1	1	111	3L	10618183	10618201	GGTCTTCGATGTCTTCCTC		59	10618029	10618108	AAACTCAATTGCCATGGTC		58	NA	Nonspecific
Drosophila melanogaster	50	nudE	FBgn0036059	FBtr0114600,FBtr0113158,FBtr0076344,FBtr0113159	2	4	4	100	3L	9893399	9893533	CTCTCAAGCTCAAGTTGGA		59	9893597	9893615	CAGGTACACCTTCATGGTG		59	NA	
Drosophila melanogaster	50	CG5194	FBgn0035955	FBtr0076548	3	1	1	117	3L	9002145	9002164	GATTCTGACAAGAAGGATCC		57	9001997	9002015	ATGGTGGTATGGGAATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5660	FBgn0035942	FBtr0076560	2	1	1	264	3L	8955232	8955309	CTTGGAAACAACCAAACCT		58	8954986	8955004	GCTAATCTCATTGCGACTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6683	FBgn0035902	FBtr0076655	3	1	1	111	3L	8507734	8507810	AAATTCAGAAGCTAGTGCC		57	8507641	8507659	CAGAAGACTCCAATCGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nmo	FBgn0011817	FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758	2	6	6	142	3L	8040250	8040352	GTCTTCGATCCGGATAAGC		59	8040457	8040476	AAATCAGCCGTATACTGACG		59	NA	
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112696,FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112697,FBtr0112702,FBtr0112698	3	8	10	92	3L	7703513	7703532	GATACTCGTGGAAAGGTCAG		59	7703375	7703459	ATGGTCATTATCGAGAAGCA		58	NA	
Drosophila melanogaster	50	Lcp65Ag2	FBgn0020637	FBtr0077059	3	1	1	165	3L	6126391	6126409	CTGAACGACATTGGAACTG		58	6126244	6126262	GCAATTTCACTTAGGCCAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Jon65Aiv	FBgn0035664	FBtr0077040	1	1	1	101	3L	6032456	6032474	GACTTTCCCTGAAGCTGAG		59	6032539	6032634	GAACTCCATCGGTACAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr64Aa	FBgn0035510	FBtr0073254	3	1	1	197	3L	4209066	4209084	GAAACTGATCCTCGTCCTG		59	4208560	4208905	CCATCATGAACATCGTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10359	FBgn0035452	FBtr0114608,FBtr0073136	2	2	2	109	3L	3613109	3613127	ACTACAAGGAGCTGATGAC		58	3613197	3613761	CAGCTGATCCAATTTCTTATCG		59	NA	
Drosophila melanogaster	50	CG14959	FBgn0035427	FBtr0073050,FBtr0073049	1	2	3	81	3L	3267275	3267433	GTACAATTGCCAGATCTTTCAC		59	3267474	3267493	GTTAAAGCTCGTCTCATTGG		58	NA	
Drosophila melanogaster	50	CG32486	FBgn0052486	FBtr0073004	1	1	1	80	3L	3057882	3057900	ATTTCTAAGAGCACTGCGT		59	3057756	3057838	GTTGCAGAATTGACACTCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG1271	FBgn0035392	FBtr0072989,FBtr0072986,FBtr0072988,FBtr0072987	1	4	4	63	3L	3053679	3053697	GTTTGTACGATCCGTTCAC		58	3053724	3053799	GAATTGATGCCGAATAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32485	FBgn0052485	FBtr0072985	3	1	1	107	3L	3050601	3050619	GAAATTGATTGTGGAGGCG		59	3050689	3051015	TTTAGAATGGCCTGAAATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sk2	FBgn0052484	FBtr0072984	2	1	1	62	3L	3048155	3048652	CCATTGTTACAACGAACCA		58	3048678	3048696	CTGATTACGGTCAGAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32320	FBgn0052320	FBtr0113433	2	1	1	85	3L	1400093	1400113	CCAGTACTATCAGATCATGGG		59	1400157	1400230	GTCTCATTGAGCTTATCTTCAC		58	NA	
Drosophila melanogaster	50	Trh	FBgn0035187	FBtr0072638	3	1	1	181	3L	1191849	1191867	AGTACATTCGACACTCCTC		58	1191394	1191471	AAAGAAGTAGAGCGTAGCC		59	NA	
Drosophila melanogaster	50	CG2811	FBgn0035082	FBtr0072412	1	1	1	62	2R	20827628	20827647	TACCCGGACTACTATGATCG		59	20827527	20827606	CTGAATGGTTTCATTCTGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34045	FBgn0054045	FBtr0100100	3	1	1	105	2R	15222293	15222484	GATGCTGTATGGCAATAAGC		59	15222551	15222570	ATTTGTCGAGTTCCTAACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	sec6	FBgn0034367	FBtr0086709	3	1	1	94	2R	14513727	14513745	GTTGTGAAGTCCCTTTGTG		58	14513801	14513886	AGATAGCTAGAAAGTCCTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18107	FBgn0034330	FBtr0086663	2	1	1	71	2R	14272195	14272278	CAATGCTATTCCGTTGTCAC		59	14272312	14272330	CGAACATTGCAATTCACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL18A	FBgn0010409	FBtr0086947	3	1	1	156	2R	13434483	13434923	CAAGGGATTGTTGAAGGAG		58	13434345	13434364	CTTGAACTTCTTCAGTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Khc-73	FBgn0019968	FBtr0087356,FBtr0087357	2	2	2	81	2R	11413463	11413540	TGGTCTATTATCTGAAGGATCG		58	11413403	11413423	AGACCGGAAAGTTGTATATCC		59	NA	
Drosophila melanogaster	50	CG10265	FBgn0033990	FBtr0087422	2	1	2	88	2R	10881076	10881095	ATACATAGTAACGCCGATCG		59	10880924	10881026	AGATGTGAATCTCCTGTCTG		58	NA	
Drosophila melanogaster	50	CG17388	FBgn0033937	FBtr0087489	3	1	1	100	2R	10329934	10329952	AATCACAGCAACAAAGCTG		59	10330013	10330034	GTGTTGTAGTTCTTCTGATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17760	FBgn0033756	FBtr0110824	1	1	1	81	2R	8514601	8514619	ATTCATGGCCATACAGTCG		59	8514663	8514750	GGCAAGTTTACTATGCTCCT		59	NA	
Drosophila melanogaster	50	CG30369	FBgn0050369	FBtr0088795	1	1	1	129	2R	4146973	4146991	GTTTGCATCAAAGGAGGAC		59	4147084	4147102	GAATCCAGATGATGGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2070	FBgn0033203	FBtr0088921	3	1	1	88	2R	3550377	3550395	GAACTGTTCCGCAATACAC		59	3550499	3550520	CTAGCCGTCTTTATGAATATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30158	FBgn0050158	FBtr0086165	1	1	1	119	2R	2793755	2793773	AAGAGCTCTATTGTGAAGC		57	2793856	2797446	GATGTCCACCTTTAGTGTG		57	NA	
Drosophila melanogaster	50	CG15130	FBgn0032860	FBtr0081366	3	1	1	63	2L	20424459	20424477	CATAGCTGTAGCTTCGGTC		59	20424414	20424432	GCATACCATAATCACTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10949	FBgn0032858	FBtr0081367	2	1	1	77	2L	20416089	20416164	GAGGAACTTTGCTACAACC		58	20416030	20416048	CTGGTTGATCTGATGACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ddc	FBgn0000422	FBtr0081168	2	1	3	128	2L	19119265	19119283	TATGCACGTCTGATAACCA		58	19118128	19119173	CCTTTCGCGTATATTCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33928	FBgn0053928	FBtr0091932	3	1	1	86	2L	17436046	17436125	ACCATTCTTGTCCCTATACAC		59	17435980	17436001	GCGGTACGTATTTAGTAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15141	FBgn0032635	FBtr0080979	1	1	1	60	2L	17411358	17411376	AAATGATTTGCGATGGCTG		59	17411400	17411418	GCTAATCCAGTGTAGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tehao	FBgn0026760	FBtr0080502	2	1	1	73	2L	13436778	13437924	CTGACTAACTTGTCGAGCA		59	13437961	13437979	AGCGAGTTCTTGTTCAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6565	FBgn0032513	FBtr0080468	3	1	1	80	2L	13375132	13375212	CCTCCTTATACTCATACAAGGT		58	13375253	13375271	CCAAATCCGTTTGAACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aub	FBgn0000146	FBtr0112793,FBtr0080165	1	2	2	80	2L	10999568	10999587	AGGCCATAATGATCATTCCC		59	10999440	10999525	CCCTCAACGTCCTAAAGTC		59	NA	
Drosophila melanogaster	50	CG33129	FBgn0053129	FBtr0080169	3	1	4	108	2L	10968579	10968708	GCTTCTGAAAGCTATAAACGAC		59	10968492	10968511	CAGTTCTTCGTTCAGATTCG		58	NA	
Drosophila melanogaster	50	CG15828	FBgn0032136	FBtr0079844,FBtr0079843	1	2	2	80	2L	9643116	9643136	CTCGACTACAAGACACTATCC		59	9643175	9643267	CGATTCCAATAGGTGATTTCTG		59	NA	
Drosophila melanogaster	50	Trx-2	FBgn0040070	FBtr0079839,FBtr0079840	1	2	2	203	2L	9613532	9615311	AAAGATAAGGCCGATCTCG		59	9615559	9615579	GGAGATGTTGTATTCCATTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4389	FBgn0028479	FBtr0079859,FBtr0079857,FBtr0079858	1	3	3	81	2L	9575428	9575513	GGTAAACTTCGCGTAAATCG		59	9575366	9575384	TCTTCACAAAGTCGGTGTC		59	NA	
Drosophila melanogaster	50	CG15439	FBgn0031606	FBtr0077455	3	1	1	71	2L	4450817	4450835	AAGATCTGACTAAGTCGCC		58	4450355	4450782	CGGCAGGAACATTAATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10031	FBgn0031563	FBtr0077544	1	1	1	90	2L	3698758	3698841	AGAGACTGGTACCAGATCC		59	3698686	3698707	GAATCCTTGTTGTAGTAGAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16713	FBgn0031560	FBtr0077547	1	1	1	167	2L	3695219	3695292	ATGCAATCTGTGGTCTACC		59	3695070	3695088	CTTCACAGATTTCCCTCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	drm	FBgn0024244	FBtr0077531,FBtr0077530	3	2	2	79	2L	3545739	3545757	TGAGATCACCTATTCGTGC		59	3545800	3546741	ACTGACTACATCTGTGCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG2862	FBgn0031459	FBtr0077718,FBtr0077719	1	2	2	63	2L	2770395	2770472	GATAAATGCGTTGCCTTCC		59	2770499	2770517	GAGGAATCACGAGGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:S7:64D	FBgn0011986	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snmRNA:184	FBgn0065102	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG14613	FBgn0031188	FBtr0077367	2	1	1	64	X	21873005	21873023	CTGTGCTATAAAGTGGCCA		59	21872796	21872814	ATGGATACGGTTGTACACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	sol	FBgn0003464	FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676	1	4	4	80	X	21228148	21228166	AGAGCTACAATGTGGTGTC		59	21228209	21228297	CGATGATTACTTGTCTCTGC		58	NA	
Drosophila melanogaster	50	CG1486	FBgn0031174	FBtr0077191,FBtr0077190	2	2	2	91	X	21197131	21197149	CAATGCTTCCTACTTCGAC		58	21197258	21197279	GGTGTTCAATTACCTCAAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32494	FBgn0052494	FBtr0074506	2	1	1	77	X	17894605	17894623	ACAATATTTGTCGCCACAG		58	17894664	17894682	TTTACTGCCTAGTCGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	1	7	7	80	X	15717652	15717670	TATCACCGGCATCTATTCG		59	15717712	15717802	TTGCCGTATATCAACAGTCTC		59	NA	
Drosophila melanogaster	50	CkIIbeta	FBgn0000259	FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559	2	5	6	163	X	11689032	11689147	TTGTTCCAAGGCTATATGGA		58	11689687	11689705	TTGTATTCGTGCGTATGTG		58	NA	InUTR
Drosophila melanogaster	50	CG34408	FBgn0085437	FBtr0114584,FBtr0114585	1	2	4	99	X	10120044	10120555	ACTGAGTTCGGATAATGCC		59	10120618	10120636	CAGCGAAACATTCAGATCC		58	NA	
Drosophila melanogaster	50	bys	FBgn0010292	FBtr0071090	1	1	1	236	X	7796327	7796409	TCAGTTTGAATGATGGCCA		59	7796607	7796627	CGATTTCCTCGATCTTTAGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11148	FBgn0039936	FBtr0089250,FBtr0089249	2	2	3	185	4	886491	886567	TTGGCAATAACTCTCGTCC		59	886265	886342	CGGCCTTTGATATAACCGA		59	NA	
Drosophila melanogaster	50	Pur-alpha	FBgn0022361	FBtr0089995,FBtr0089994,FBtr0089993,FBtr0089996	2	4	4	116	4	581196	581348	TAAAGGTTGCTGAGATTGG		57	581427	581446	CTAGAGAAGCGTAGTAATCG		57	NA	
Drosophila melanogaster	50	RpL32	FBgn0002626	FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555	1	4	5	60	3R	25871413	25871431	CGGATCGATATGCTAAGCT		59	25871309	25871327	ACTCTGTTGTCGATACCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113387,FBtr0084928,FBtr0113388,FBtr0084927	2	4	7	80	3R	21535235	21539274	GAATTGGAATGTGGCAATAGG		59	21535175	21535194	CTTGAAGCGATTCTGAATGC		59	NA	
Drosophila melanogaster	50	Aats-met	FBgn0027083	FBtr0082895	1	1	1	112	3R	10084721	10084741	GTCTGGTTAGATGCTTTAGTC		58	10084562	10084580	AACTTGAGGATGTCCTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3153	FBgn0038198	FBtr0082889,FBtr0082888	2	2	2	77	3R	9917057	9917075	TTATTTGTGATCTTCGCCG		58	9917116	9917541	CTTCGATTTGGATTTCGGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	nocturnin	FBgn0037872	FBtr0113220,FBtr0113218,FBtr0113219	2	3	3	94	3R	7032965	7033088	ATCCTATCACAAACTCTCGG		58	7033145	7033163	TGGACAATCAGGTACTTGC		59	NA	
Drosophila melanogaster	50	CG14691	FBgn0037829	FBtr0082313	1	1	2	80	3R	6579819	6579899	GAATCTAAGCTGGAATTGGT		57	6579758	6579776	GTATGTGATTCGAGACCAC		57	NA	
Drosophila melanogaster	50	sle	FBgn0037810	FBtr0082231,FBtr0082232	1	2	2	155	3R	6162872	6162952	AAAGAAAGAGCATCTTGCC		58	6163071	6163089	TTTACATCCTTCTTCAGCG		57	NA	
Drosophila melanogaster	50	CG33654	FBgn0053654	FBtr0091633	2	1	1	75	3R	5408712	5408733	GGAGCTATAAGTACTTAACGCT		59	5408566	5408584	AACATGAAGGGTCTGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34301	FBgn0085330	FBtr0112497	1	1	1	73	3R	4599184	4599205	GATTTCCATTCCATACCTAAGC		58	4599239	4599257	AGAAAGGTCTTCAGGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33779	FBgn0053779	FBtr0091780	1	1	1	60	3R	4030176	4030194	ATTGAAGGCCTATTGGTCG		59	4030134	4030152	AAAGTCCGTCTTAACTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	zen	FBgn0004053	FBtr0081670	2	1	1	60	3R	2579834	2579853	CTACTATCCAGTTCACCAGG		58	2579793	2579812	TTTAACCTCGGAAGGATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6838	FBgn0037182	FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186	1	4	4	88	3L	22709292	22709405	TCAGTAAGGATCCAAACCC		58	22709222	22709240	ATTAAGCAGATTCACGCTG		58	NA	
Drosophila melanogaster	50	CG10566	FBgn0037050	FBtr0078292	1	1	1	81	3L	21125772	21125854	GTCGTTATTCTTTGCTAACGAG		59	21125896	21125914	ACTTGGTTTGTCCTCTTCG		59	NA	
Drosophila melanogaster	50	CG5059	FBgn0037007	FBtr0078218,FBtr0078216,FBtr0078217,FBtr0078219	3	4	4	116	3L	20508982	20509000	TGATGAGCTCAGAAACGTG		59	20508709	20508828	TCAATGTTCCAGCTACTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Lmpt	FBgn0036672	FBtr0089452,FBtr0089457,FBtr0089456,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459,FBtr0089455	3	8	8	78	3L	16914083	16914101	GAGCAGGAGATCTATTGCG		59	16914143	16914289	AGGTGATGACCTTATTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG9674	FBgn0036663	FBtr0075342,FBtr0075341,FBtr0075343,FBtr0075344	2	4	4	96	3L	16784163	16784181	GCAGACGATAATGTAACCG		58	16784030	16784103	CCTCTCCATATTTGCATGC		58	NA	
Drosophila melanogaster	50	CG13454	FBgn0036503	FBtr0075603	2	1	1	66	3L	15510070	15510090	GAGGATATGTTCAAGGAAGTG		58	15510024	15510042	AGAAATCCTCGTTTCCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6707	FBgn0036058	FBtr0076356,FBtr0076358,FBtr0076357	1	3	3	82	3L	9889096	9889114	CTGGTGTTCCTCATCACAG		59	9888951	9888969	TAGAGGAAGTACATGCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8108	FBgn0027567	FBtr0076339,FBtr0076340	1	2	2	102	3L	9858406	9858424	CACTACGACAACAGGAGTC		59	9858490	9859423	GAGATGAGTCATAGCTGCG		59	NA	
Drosophila melanogaster	50	CG4942	FBgn0035960	FBtr0076524	3	1	1	60	3L	9066371	9066392	CATACCAAGGAACAACTATTGC		59	9066413	9066431	GCTTCTGTAGACGACAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5804	FBgn0035926	FBtr0076591	2	1	1	147	3L	8781445	8781463	GTACAAGCAGTTCCAGGAG		59	8781316	8781335	GTTGTACTTCTCGTACAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7942	FBgn0035838	FBtr0076687,FBtr0076686	2	2	2	60	3L	8115440	8115458	ATAAGCGGAATCTTCAAGG		57	8115482	8115500	TATACGGAGGGAATTCGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lark	FBgn0011640	FBtr0076842,FBtr0076843,FBtr0076841,FBtr0076844	3	4	5	100	3L	7333781	7333799	TACAGAGATCGCATGTACG		58	7333861	7333986	TAGTCATAGTCCCTAAAGCCA		59	NA	
Drosophila melanogaster	50	ple	FBgn0005626	FBtr0076957,FBtr0076956	2	2	2	166	3L	6709238	6709257	TTAACTCACCATACCACACC		59	6708457	6708814	GAACCAGTATACCGTGGAC		59	NA	
Drosophila melanogaster	50	Pk61C	FBgn0020386	FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466	3	8	8	107	3L	142872	142953	CGCAAAGAACTCTTTCGAC		59	143024	143042	TTCTTGAGGATCACTTCGC		59	NA	
Drosophila melanogaster	50	apt	FBgn0015903	FBtr0072066	2	1	5	116	2R	19452572	19484432	CGGTCAACAAACAGTATTCG		59	19484508	19484591	GTGTCATTTCCGTCTTTATGTC		59	NA	
Drosophila melanogaster	50	CG30280	FBgn0050280	FBtr0071759	3	1	1	102	2R	18001831	18001849	TCTCCACATATGATCGGGA		59	18001915	18001995	TTAAGGTTGCTGTCCAGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15111	FBgn0034419	FBtr0086581,FBtr0086580	3	2	2	69	2R	15027275	15027293	TATTCCGTAACGTTCCAGC		59	15027389	15027407	TGAGATCAAGTCCTTTGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	qkr54B	FBgn0022987	FBtr0086925,FBtr0086923	1	2	3	80	2R	13359115	13359204	CATCACAGCTATAGGAGCTC		59	13359244	13359265	CAATATGGACATCACTTTCTGC		59	NA	
Drosophila melanogaster	50	l(2)k01209	FBgn0022029	FBtr0086914,FBtr0086912,FBtr0086913,FBtr0086915	3	4	4	96	2R	13311459	13311541	TTCGTCATAGGAATCTGCG		59	13311601	13311619	ACAACAGTGTTACCCATGG		59	NA	
Drosophila melanogaster	50	unc-104	FBgn0034155	FBtr0087079	2	1	4	94	2R	12645902	12646140	TGATACCTTCTAGGCAACG		58	12645826	12645845	GCTCTCCACATTATAGTCCG		59	NA	
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	2	5	7	81	2R	11836642	11836721	TTTGCTACGTGCTACTCTC		59	11836579	11836599	TCCGCTCTAGTTATATTCGAG		58	NA	
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	3	12	12	123	2R	6499316	6499432	TCTATCAAATACCACCGAACC		59	6499517	6499535	ATTCGAGTTGCTCTCATCG		59	NA	InUTR
Drosophila melanogaster	50	lt	FBgn0002566	FBtr0111123,FBtr0111125,FBtr0111124	1	3	3	80	2L	22832737	22832816	GCATAGTTGACTACTTTAGCC		58	22832857	22832876	GTGATTGTCGAAGATTTGGA		58	NA	
Drosophila melanogaster	50	CG9339	FBgn0032901	FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445	1	8	8	80	2L	20877196	20877214	CTGCAAGAAGATACCAGTG		57	20877069	20877155	GAAATATACTGGGTACTCAGTC		57	NA	
Drosophila melanogaster	50	CG32972	FBgn0028905	FBtr0080599,FBtr0080600	2	2	2	131	2L	14164509	14164588	AATGATGTGACTCTCACCAC		59	14164397	14164415	CTGCAGGATATCTCCAACG		59	NA	
Drosophila melanogaster	50	CG9302	FBgn0032514	FBtr0080470	1	1	1	87	2L	13377039	13377057	GTCATGTTCTATGCACCCT		59	13376907	13376925	GAGGATCATCCTGTAAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7224	FBgn0031971	FBtr0100151	3	1	2	157	2L	7999077	7999098	GCATAACCGATAAAGGAAATCC		59	7999215	7999234	TTGAAAGAACGTTAGCATCG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG5261	FBgn0031912	FBtr0079445,FBtr0079444	2	2	2	104	2L	7428203	7428285	TAAGCTCAACGAAGGTGAC		59	7428352	7428371	CCCTGGATGAGAATCTTAGC		59	NA	
Drosophila melanogaster	50	torp4a	FBgn0025615	FBtr0070690	3	1	1	111	X	4543530	4543609	GATGAATTAGAAAGATCCCTGG		58	4543440	4543458	GTTTCCGTGACTTATTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ocn	FBgn0041102	FBtr0085599	3	1	1	197	3R	25863082	25863157	GAGGAAATCTTTGAGGAAATCC		59	25862851	25862870	GTTGTAATGCTGGAATTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Trc8	FBgn0039668	FBtr0085431,FBtr0085430,FBtr0085432,FBtr0085429	1	4	4	92	3R	25325968	25326046	GCTATCAGGAAATGTATTCCG		58	25325896	25325914	AACGATCCTGAACGTACAG		59	NA	
Drosophila melanogaster	50	RpS29	FBgn0037752	FBtr0082137	1	1	2	149	3R	5604292	5604310	GATTCTTTGATGGAACCGA		57	5604423	5604499	GCTTCTTGAAGCCAATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4962	FBgn0036597	FBtr0075471	1	1	1	84	3L	16288493	16288574	CTGATTGCCCTCATCTCTG		59	16288427	16288445	CGTATCCCAGTCCATATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32147	FBgn0047178	FBtr0075647	1	1	1	61	3L	15136794	15136901	CATATCTTGTTATCCATGTCGG		58	15136754	15136773	CAGCTTCTCGATGTATACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5280	FBgn0035952	FBtr0076552	1	1	1	61	3L	8982482	8982567	GAGGATCTCATAAACGAGCT		58	8982440	8982458	ATTTCCGTCAACCACTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	mago	FBgn0002736	FBtr0071569	1	1	1	154	2R	17016322	17016340	AAGAACGACACCATGATCC		59	17016458	17016534	ATGACGATCTCCAGTTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6g2	FBgn0033696	FBtr0088009	1	1	1	117	2R	8076681	8076699	CTTCTGGGAGGGATTACTC		58	8076531	8076600	GGTTGAGGAAAGTACTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Stlk	FBgn0046692	FBtr0111112	1	1	2	80	2R	434474	447872	TTTGTACAAGCAGGTTTCC		58	447913	447934	CGGAGTGAATATAAGTAAGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10194	FBgn0032790	FBtr0081285	2	1	1	61	2L	19489642	19489724	GATAAGAAATCGCTGGATCCA		59	19489601	19489619	TCGAAGGTTTCTCGTATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15458	FBgn0040651	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-A2564	FBgn0065066	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-C3227a	FBgn0082940	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snRNA:U2:14B	FBgn0003920	FBtr0074208	1	1	1	61	X	16148717	16148738	CCTTATGGCTAAGATCAAAGTG		58	16148757	16148778	GAGGAACTATCAGATGTTAAGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	fog	FBgn0000719	FBtr0077342,FBtr0100538	3	2	2	224	X	22246596	22246614	TTTATGTGGCCAGACTTGG		59	22230909	22230929	TTCTCCTTGGTAAGGTTTCTC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG41480	FBgn0084040	FBtr0111184	1	1	1	80	X	22183306	22183929	GCATAGTTAAGATGACTGGC		58	22183245	22183264	GATTAGCGGTACATGAATGG		58	NA	
Drosophila melanogaster	50	CG17600	FBgn0031195	FBtr0077358	1	1	2	85	X	21930348	21930369	CAATCTTATTTCGCACCAAGAG		59	21930415	21930593	TCTTAGTGCCATTCACCTG		59	NA	
Drosophila melanogaster	50	CG14621	FBgn0031183	FBtr0077344	1	1	1	73	X	21847963	21847982	CTATGGCTTTACATGGACAG		58	21848372	21848392	GCAATAACTCGATAGTCTAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG1486	FBgn0031174	FBtr0077190	1	1	2	83	X	21195591	21195747	CTTCCAGTATTCGATCGGG		59	21195794	21195812	TCGACACCTTAACGTTCTC		59	NA	
Drosophila melanogaster	50	CG32523	FBgn0052523	FBtr0077183	3	1	1	60	X	21089523	21089542	TTATTCGTACAGGTGACGAG		59	21089564	21089583	AACGAGAGTAGAACATCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	unc	FBgn0003950	FBtr0077259	1	1	1	148	X	20983986	20984067	ATAGAAACCAAGCTCCTGC		59	20983856	20983874	TTGAGGTACCGTTTCATCG		59	NA	
Drosophila melanogaster	50	CG11229	FBgn0031138	FBtr0077282	2	1	1	60	X	20782755	20782773	CTCTGATGACGACAAAGAC		57	20782796	20782815	AAATACGTAGGAGATGGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14234	FBgn0031065	FBtr0074790	2	1	1	104	X	19631526	19631545	AAGTACGTGACCATTCTCAC		59	19631611	19631743	GCCGATTATCCAATTGATGG		59	NA	
Drosophila melanogaster	50	CG14224	FBgn0031057	FBtr0074750	1	1	1	210	X	19579805	19579823	TTCAACGACTTCATGATGC		58	19580076	19580094	TCAAGGACAACTGGTTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	dome	FBgn0043903	FBtr0074756	1	1	1	60	X	19572309	19572327	AATGTGATCCTCTTCAGCA		58	19572185	19572203	TGATCACGTACAGTTGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pfrx	FBgn0027621	FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720	3	8	8	60	X	19402026	19402044	GTTAAACGAGATCGATGCC		58	19402068	19402086	CTTCTCCTTGATTTGCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8010	FBgn0031008	FBtr0074688	3	1	1	144	X	19161473	19161491	ATACAACGACTTCGAGGAG		58	19161281	19161365	GTGCCTGTAATACTTCTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	psh	FBgn0030926	FBtr0074629	1	1	1	107	X	18379263	18379339	ATATCGTCATACGAAGCGT		58	18379174	18379192	GGATGTTATCCGTCTCGAC		59	NA	
Drosophila melanogaster	50	CG15059	FBgn0030905	FBtr0074585,FBtr0074584	2	2	2	71	X	18153276	18153294	CAGATGCTAGGATCAGTCC		58	18153223	18153241	TTATCTTGGACCTACCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089658,FBtr0089660,FBtr0089657,FBtr0089661,FBtr0089659,FBtr0089662,FBtr0089663	1	7	7	82	X	17844790	17845235	CTAACTGTCAGGTTCCTCG		59	17844726	17844744	ATGATGGCGATTATGTCGA		58	NA	
Drosophila melanogaster	50	CG13001	FBgn0030806	FBtr0074417	3	1	1	82	X	16836162	16836180	ACCAACTTCCTTAAGGTGG		59	16836098	16836116	GAGTTCTGATTAACCGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	3	7	7	85	X	16270054	16270134	GAGAACGAGGTGAAATGGA		59	16270183	16270201	CTGTAGGTGGGTAAGTCCT		59	NA	
Drosophila melanogaster	50	CG9216	FBgn0030726	FBtr0074252,FBtr0074253,FBtr0074254	2	3	3	96	X	15989526	15989544	ACTGTTGACGGATTTAAGG		57	15989384	15989402	AATATCATCTGCCTGAGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	eIF5	FBgn0030719	FBtr0074149,FBtr0074144,FBtr0074148,FBtr0074147,FBtr0074146,FBtr0074150,FBtr0074145	1	7	7	127	X	15882571	15882662	GTTCGATCACAAGAATGAGC		59	15882463	15882481	AATTGGTCTCCGGATTGTC		59	NA	
Drosophila melanogaster	50	CG8974	FBgn0030693	FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186	1	5	5	210	X	15688455	15688537	GATCCACGTAACAAAGTTCC		58	15688199	15688217	GTTCATCCTCGTATTGCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	l(1)G0168	FBgn0027287	FBtr0074042,FBtr0074043	1	2	2	130	X	15403948	15403966	AAGGTGGGACTCAATAAGC		59	15404121	15404139	TCCAGGAATTGAACGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6299	FBgn0030641	FBtr0074033,FBtr0074032	1	2	2	138	X	15360380	15360398	CATATGCACCTTCTTCGAG		57	15360497	15360584	GTAGATGATCTTGATTGTGCTC		58	NA	
Drosophila melanogaster	50	CG9164	FBgn0030634	FBtr0074012,FBtr0074014	3	2	3	74	X	15276618	15276636	CATGAACAACATACCCGGA		59	15276372	15276581	CTATGAAAGCTGGGAAACTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG9065	FBgn0030610	FBtr0073966	2	1	1	74	X	14978660	14978678	GGTGAAATATCCGTCTCGA		58	14978541	14978559	AACTCCTTGAGATGCACTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG32603	FBgn0052603	FBtr0073894	3	1	1	73	X	14079155	14079173	GTTGTGAAGACCTACTCGG		59	14079210	14079228	TAGGTCTGAGAGTATCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32614	FBgn0052614	FBtr0073867	2	1	1	84	X	14026231	14026249	ATTTGACGATCGCCTAGAC		59	14026297	14026315	CTGGCAATTTGTGATTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15760	FBgn0030508	FBtr0073810	3	1	1	142	X	13566452	13566528	ATATACGGAGGTGACCTCC		59	13567150	13567168	TGCTATTCGCCATATACCG		59	NA	
Drosophila melanogaster	50	CG15745	FBgn0030469	FBtr0073758,FBtr0073759	2	2	2	60	X	13200446	13200465	CTATTCGGATGACATAACCG		57	13200485	13200506	CAGACGAAAGTATTCCATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tomosyn	FBgn0030412	FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678	3	4	4	91	X	12531136	12531154	GAGAAGGGAAACATACACG		57	12531208	12531302	GTTCTAACCACTTCAATTGC		57	NA	
Drosophila melanogaster	50	Upf1	FBgn0030354	FBtr0073596	1	1	1	87	X	11795423	11795441	GACTTTGGGCAAATATCGC		59	11795285	11795303	AGAACTGATTCAAGCTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	p24-1	FBgn0030341	FBtr0073604	3	1	1	70	X	11745766	11745784	TTATGGTCTGGTCATCCCT		59	11745714	11745732	CCTCAGCACCATAATCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1578	FBgn0030336	FBtr0073607	3	1	1	80	X	11704489	11704576	GATCGATTCGATTATGAGGAG		57	11704429	11704448	GTTCTCGTAATTCCATCGTC		58	NA	
Drosophila melanogaster	50	Karl	FBgn0030334	FBtr0073556,FBtr0073557	3	2	2	86	X	11684951	11684969	TATTACGCATCCACAGAGG		58	11685017	11685102	CATCGTTATATGCTGATCCTC		58	NA	
Drosophila melanogaster	50	CG1837	FBgn0030329	FBtr0073551	3	1	1	109	X	11612768	11612786	GTCAAATTCTTTGCACCCT		58	11612918	11612938	TCGATCTTCGAGATAGTTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ptp10D	FBgn0004370	FBtr0073525,FBtr0073524	1	2	3	163	X	11567985	11568087	CATACAAATCCCAGCTCGA		59	11568214	11568232	TGCTGTAGCGTATTGTAGC		59	NA	
Drosophila melanogaster	50	Cyp4g15	FBgn0030304	FBtr0073504,FBtr0073503	2	2	2	271	X	11376433	11376452	GAGGATCTCAAGCTGAACTC		59	11376782	11376800	GAGTAGACACGGTAGTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489	1	8	12	99	X	11291936	11292011	ATATAACCAGAGAACCGCG		59	11292074	11292092	GACACATAGATACCCTGGC		59	NA	
Drosophila melanogaster	50	sev	FBgn0003366	FBtr0073393	1	1	1	84	X	10972703	10972721	TTAGCCGATTACGACTGTG		59	10972571	10972657	CAAATCGGAACCTGTATTGTG		59	NA	
Drosophila melanogaster	50	CG2157	FBgn0030244	FBtr0073382	2	1	1	113	X	10764123	10764220	TCTGGGTGGATTAGATGGT		59	10764297	10764315	GATCCATAGCCACCAAGAG		59	NA	
Drosophila melanogaster	50	spri	FBgn0085443	FBtr0112688,FBtr0112689	1	2	4	86	X	10386360	10390835	CGTGAAGTCTTATGTCACC		57	10386292	10386310	CAATTGAAGGGTGTATGCC		58	NA	
Drosophila melanogaster	50	CG9691	FBgn0030160	FBtr0071391	3	1	2	299	X	9778650	9778668	TCTTCAAGAACCTAGGCTG		58	9779000	9779018	AAACTTATGCAACGAGACG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12112	FBgn0030048	FBtr0071233	3	1	1	94	X	8453600	8453693	GGATCTATACGAATTCCATGC		58	8453526	8453545	GTAGTTCAGAAGGATGTCCT		58	NA	
Drosophila melanogaster	50	CG2116	FBgn0030003	FBtr0071152	3	1	1	60	X	8025459	8025478	TTGAGGACAATCAACCAGAG		59	8025501	8025519	CTCTCGTCCAAATATTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gclc	FBgn0040319	FBtr0071108,FBtr0071107	3	2	2	111	X	7997903	7997922	CATTGAACAGTATCTTCGCT		57	7997745	7997829	GGAATCCTGCTTGTAATCC		57	NA	
Drosophila melanogaster	50	CG10932	FBgn0029969	FBtr0071143	2	1	1	63	X	7781998	7782016	GAGATCGTCATCTCAGAGG		58	7781953	7781971	CCAACTGTCCAAACTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32727	FBgn0052727	FBtr0071056	3	1	1	62	X	7301628	7301649	TAAGTATTAGTCCTAACGCTCC		58	7301672	7301690	TTCGATCCGGATGTTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CheA7a	FBgn0029948	FBtr0071055	2	1	1	60	X	7272237	7272255	TCTTGGTTCATAGTTGTCG		57	7272278	7272297	ATCGTAAAGGTGTTTAGCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pod1	FBgn0029903	FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966	2	5	6	106	X	6701674	6702857	CAATTATTCCACGTTTGGGTC		59	6702925	6702943	GATATTCTCGTGGGATCCC		58	NA	
Drosophila melanogaster	50	pod1	FBgn0029903	FBtr0070965,FBtr0070968,FBtr0070967,FBtr0112956,FBtr0070964,FBtr0070966	1	6	6	80	X	6700768	6700786	GGTTTGATGTACTCCACAG		57	6700827	6700924	CTCATTGTTCGAGAATATCTCC		58	NA	
Drosophila melanogaster	50	shf	FBgn0003390	FBtr0070978	2	1	1	227	X	6667951	6667972	CCTACTTCACTAACAACTTTGC		59	6666120	6667098	GTCCTTGCAAATACCACCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4666	FBgn0029838	FBtr0070887	1	1	1	70	X	5970626	5970644	TTCAGACCAAGCTGATCTG		59	5970574	5970594	GTCCGAAAGGGTAATAAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15465	FBgn0029746	FBtr0070742	2	1	1	60	X	5069987	5070005	CAATTGCAACCCTCATCAC		59	5070026	5070047	GATTCTGACTTATAATCGCCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4068	FBgn0029738	FBtr0112949,FBtr0070728,FBtr0112950,FBtr0070729,FBtr0112948	1	5	5	111	X	4822286	4822304	GGATTCGGGATTCGATGAG		59	4822109	4822127	GACTAGGATTAGCTGCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(1)G0334	FBgn0028325	FBtr0070708,FBtr0070710,FBtr0070709,FBtr0070711	2	4	4	150	X	4598141	4598234	ACAACAACTACGGAATGGG		59	4598348	4598366	TTCACATAGTTGATGGCGA		58	NA	
Drosophila melanogaster	50	peb	FBgn0003053	FBtr0100265,FBtr0070680	1	2	2	178	X	4514859	4514877	ATACGGAGAACTTCACCTG		58	4515310	4515328	AACTTGATGCTGTTTGTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG2865	FBgn0023526	FBtr0070408	1	1	1	61	X	2186463	2186481	TGGAGAGGATCAAGGACTC		59	2186420	2186438	GTAGGTGTTGTTGATGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0144	FBgn0027296	FBtr0070414	3	1	1	199	X	2155442	2155510	ACTCATTTCAAAGTGCCGA		59	2155261	2155279	GTAGCAGCTGTAGTCACTG		59	NA	
Drosophila melanogaster	50	CG3835	FBgn0023507	FBtr0070383,FBtr0070382,FBtr0070381	3	3	3	272	X	2038240	2038324	TTCAAGTTCCTGAACTCCC		59	2038560	2038578	AATGTTGTAGAAGTCCCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Nmdar2	FBgn0053513	FBtr0070288,FBtr0091454,FBtr0091453	2	3	3	132	X	1385974	1386202	GTGGGAAGAGATTGGAGTG		59	1385860	1385881	GAGGAATGTGATCTTCAAATGG		59	NA	
Drosophila melanogaster	50	CG11418	FBgn0024360	FBtr0070237,FBtr0070236	3	2	2	60	X	1239534	1239553	CCTGTTGAACCTGTTTAAGC		59	1239493	1239511	CTTGAAGAACATGTTCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18823	FBgn0042146	FBtr0070171	3	1	1	76	X	884751	884769	ATAACGAAGGGTTCATCCA		58	884809	884827	GAAGACAATTTGGTCGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12467	FBgn0025623	FBtr0112912,FBtr0112913	3	2	2	101	X	712956	712975	TCACCTAACTGTCGTTTCTG		59	712816	712892	AGAACACAGTTAGGATCGC		59	NA	
Drosophila melanogaster	50	CR32011	FBgn0052011	FBtr0089182	1	1	1	84	4	30605	30624	GCTTATACACAAATGCAGGA		58	30381	30558	CTGTCACCCTTCTTAACGA		58	NA	
Drosophila melanogaster	50	myoglianin	FBgn0026199	FBtr0089093,FBtr0089092,FBtr0089095,FBtr0089094	3	4	4	87	4	713107	713125	ATTCTAATAAAGGGCGCAG		57	712973	713057	CTATGTGAACAGTCAATGGA		57	NA	
Drosophila melanogaster	50	CG1909	FBgn0039911	FBtr0089080,FBtr0089079	3	2	2	80	4	606384	606471	CAAGATTATTGTAAGGAGGCC		58	606513	606531	CATGACGCGAATACTTCTC		58	NA	
Drosophila melanogaster	50	CG1970	FBgn0039909	FBtr0089105	2	1	1	81	4	589923	590616	GCTAAGTACATTCGAACTCTC		58	589862	589880	CATCTAAGGCATGTGTTCC		58	NA	
Drosophila melanogaster	50	CG2177	FBgn0039902	FBtr0114519,FBtr0089132,FBtr0089133	3	3	3	80	4	333993	334013	CTAACTCTTGGATTGGTTGTG		58	333875	333893	AACGTCTTGATGGCTAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	snoRNA:Psi28S-3305c	FBgn0082974	FBtr0113593	3	1	1	60	3R	24429106	24429124	ACACCTAACTGTTAGAGCG		59	24429145	24429166	GATCTCACAGCGTTTAATAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:MeU5-C46	FBgn0043853	FBtr0081560	2	1	1	60	3R	3298754	3298774	CTGTCATTGAGTCCTAGACAG		59	3298714	3298733	ATTTCCATTTGGGTGTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0085887	2	1	14	103	3R	27784840	27798232	AGAGAATTTGTAGCGACCA		58	27707592	27784776	CGCTTAACTCCAATATTAACCG		59	NA	
Drosophila melanogaster	50	CG2150	FBgn0003065	FBtr0085859	3	1	1	75	3R	27590419	27590437	ACTCTACTCAACTCTTCCC		57	27590063	27590382	ACTAAGAACACTGAGAAGGAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	chp	FBgn0000313	FBtr0085778	1	1	1	80	3R	27032427	27032500	AATTCGCTGATGAACACGA		59	27032365	27032383	GATCCAGTTGTAGCTGAGG		59	NA	
Drosophila melanogaster	50	CDase	FBgn0039774	FBtr0085649,FBtr0085647,FBtr0085646,FBtr0085648,FBtr0085645	1	5	5	80	3R	26289006	26289024	CTGCTCTATGACATCTCCA		58	26289067	26289145	TTTGATGCACAGATACAGTC		57	NA	
Drosophila melanogaster	50	Pcd	FBgn0024841	FBtr0085458	2	1	1	153	3R	25549172	25549190	CTCAGTTCTGTATTCGCCA		59	25549307	25549583	TTCGTTTAGTCGTACCACC		59	NA	
Drosophila melanogaster	50	Ptp99A	FBgn0004369	FBtr0100523,FBtr0085423,FBtr0085422,FBtr0110981	3	4	5	108	3R	25297477	25297495	CATGTGTTCCACATACACG		58	25297567	25298890	TGTAGGGTCGTAAGTTCTG		58	NA	
Drosophila melanogaster	50	CG31044	FBgn0051044	FBtr0085391	2	1	1	81	3R	25044253	25044272	ATAGATGGCTACTGTATGGC		58	25044315	25044334	CATTTAAATGAGCGTGAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34362	FBgn0085391	FBtr0112583	3	1	2	187	3R	23909325	23909343	TATCAGCAGGGATACATGG		58	23910334	23911140	AGTAGAGGATAAACCTGGG		57	NA	
Drosophila melanogaster	50	betaTub97EF	FBgn0003890	FBtr0085261	2	1	1	101	3R	23795149	23795167	ATCTGCTATCAGAGCTTGC		59	23794902	23795085	GGACATTGTGACGTTAATGC		59	NA	
Drosophila melanogaster	50	Sce	FBgn0003330	FBtr0085245	1	1	1	99	3R	23506420	23506438	ACAGCAGTTGGTTATCCTG		59	23506282	23506303	CTTCCACGAGTAATACATTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13978	FBgn0039518	FBtr0085182	1	1	1	60	3R	23292575	23292593	GATCTTACTAACCCATGCC		57	23292615	23292635	GATCTTAGCCAAACTTATGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6271	FBgn0039476	FBtr0085149	1	1	1	60	3R	22851287	22851306	TTATGCCACCTCTGTTATGG		59	22851246	22851265	GTTAATCATCTTGGCAACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	T48	FBgn0004359	FBtr0085065	1	1	1	60	3R	22735562	22735580	GAATGCGGAGTACTTTCTG		58	22735604	22735622	ATAGAGCTTCCTGATCTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6447	FBgn0039437	FBtr0085055,FBtr0085056	3	2	2	220	3R	22450655	22450673	AGATCTTGCCCAGAAACTG		59	22450453	22450471	TCTGAGCATTAGCCTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dys	FBgn0039411	FBtr0113293,FBtr0084970,FBtr0113294	2	3	3	83	3R	21904394	21904537	GTACTCAACGATCGAGAGG		59	21904329	21904347	GAACTGGATCTTCGACTGG		59	NA	
Drosophila melanogaster	50	CG14545	FBgn0040602	FBtr0084913	3	1	1	62	3R	21676487	21676505	GAGAGCATTGAGACTACGA		58	21676443	21676461	TGACATCGGTGTACATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha4GT2	FBgn0039378	FBtr0084906	1	1	1	60	3R	21668118	21668137	CCAACAGACATAACGTAACC		58	21668160	21668178	TTCCAAACATGAATCACCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17770	FBgn0039374	FBtr0084903	1	1	1	60	3R	21637939	21637958	GGTGAGTTATATCTCAGCGA		58	21637981	21637999	TAGACATGTTTGCGTACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31370	FBgn0051370	FBtr0084829	1	1	1	122	3R	21129292	21129313	GGGAAACACTAAGAAAGATTGG		59	21129487	21129505	CAGTTTCTTCGTTAGTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31098	FBgn0051098	FBtr0084863	2	1	1	82	3R	21117525	21117543	GAAGCTAAACTACCAGGGA		58	21117403	21117480	CAATGACACCCATAAGACTG		58	NA	
Drosophila melanogaster	50	HDC15381	FBgn0086610	FBtr0113461	3	1	1	157	3R	20203015	20203033	TGTACGATGTTGTGGAGAC		59	20203210	20203301	ATTATCCAGGGATGGAACC		58	NA	
Drosophila melanogaster	50	mask	FBgn0043884	FBtr0084563,FBtr0084562	1	2	2	111	3R	20068259	20068390	CATTCAAGAGAACACCAAACTC		59	20068462	20068480	AGTCTTGTCCAAACTCACG		59	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	3	5	6	83	3R	20045868	20045949	CTAGAGATTACTGGCTGCG		59	20045803	20045821	GTTGTCGTTCAGGTAGAGG		59	NA	
Drosophila melanogaster	50	spas	FBgn0039141	FBtr0084533,FBtr0084534	2	2	2	69	3R	19866501	19866520	AAATGGTCATTCTACCCTCC		59	19866610	19866628	AATAAACCCTTAGCCGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13602	FBgn0039127	FBtr0110793,FBtr0084521	1	2	2	60	3R	19753767	19753785	GCTGATATGCTGAGTGAGG		59	19753725	19753745	GCTCATAGTATATGAGACCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tst	FBgn0039117	FBtr0084462	3	1	1	181	3R	19594956	19595041	CTAGAAATAAGCCCTTTGCTG		59	19594795	19594813	AATATCGCGCTTGATAGCA		59	NA	
Drosophila melanogaster	50	Rpn9	FBgn0028691	FBtr0084469,FBtr0084470	3	2	2	121	3R	19557825	19557843	TTCTTGAGTCGCTTAAGGG		59	19557661	19557679	CAAATCGGGAATCTTGGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4448	FBgn0039067	FBtr0084387	1	1	1	94	3R	19082119	19082215	AACTCCTACAACGAATACGG		59	19082044	19082064	CTATACATGAGTGGGTAGTGG		59	NA	
Drosophila melanogaster	50	CG4721	FBgn0039024	FBtr0084317	2	1	1	60	3R	18590492	18590511	CGGACTTATTCTGAACATGG		58	18590451	18590469	CTTCCACTGGAGAACACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7029	FBgn0039026	FBtr0084312,FBtr0113270,FBtr0113271,FBtr0113269	2	4	4	92	3R	18614229	18614308	TAGTTTCTATGCGGATCCC		58	18614364	18614382	TTGCGTTTCACTATGTCCT		59	NA	
Drosophila melanogaster	50	CG10825	FBgn0038860	FBtr0084015,FBtr0113258,FBtr0084014	1	3	3	60	3R	16956445	16956464	AGTTCACTCTACAGCTTTCC		59	16956486	16956505	GTTGCTTAAGATTCAGCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ppan	FBgn0010770	FBtr0084012	1	1	1	253	3R	16943022	16943040	ACTGTATCACGACCATGTG		59	16943257	16943326	TGAACAGTTCTTCGTCTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7056	FBgn0038852	FBtr0084037	3	1	1	60	3R	16906163	16906181	CATCTACGATCTATCCCGC		59	16906121	16906140	GGAGTCCATACTCTTCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS30	FBgn0038834	FBtr0083969,FBtr0083970	1	2	2	112	3R	16676605	16676623	TGGACTAGAGACCATCGAG		59	16676786	16676804	AATCGAGGCTGAATTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31203	FBgn0051203	FBtr0083926,FBtr0083924,FBtr0083923,FBtr0083925,FBtr0083927	1	5	5	86	3R	16575021	16575039	GATGGAATTACGGAAAGCC		58	16575088	16575199	GAACATAACCCTAAACACGG		58	NA	
Drosophila melanogaster	50	Cpr92F	FBgn0038819	FBtr0083919	3	1	1	72	3R	16497920	16497938	CATGGTAGCTACTACGGTG		59	16497972	16497992	CTTAATAGTGGTCATAGTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5060	FBgn0038780	FBtr0113251,FBtr0083871	3	2	2	201	3R	16116118	16116136	TTCAAGAAGGGAGACATCG		58	16116301	16116697	TTGATCGACTGTCACTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31219	FBgn0051219	FBtr0113400	3	1	2	106	3R	15477461	15477480	AGAAGATCATAGTGCATGGG		59	15477549	15477679	GATTCCTGTCCTATAGCGC		59	NA	
Drosophila melanogaster	50	CG17751	FBgn0038717	FBtr0083778	3	1	1	83	3R	15433735	15433753	TATGGACACCCAGTATGTC		58	15433857	15433875	ATGATGTTTAGCCCGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6255	FBgn0038708	FBtr0083769	2	1	1	60	3R	15288547	15288566	GTTCTAGTCCAGGGATTCAC		59	15288506	15288524	ACTTTATGGACTCCTCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7208	FBgn0038575	FBtr0083618,FBtr0083617	3	2	2	282	3R	14010549	14010567	AAGAGCTCTATGCTTCTGC		59	14010221	14010240	CAAATATGGAAGCCATGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3534	FBgn0038463	FBtr0083370	2	1	1	94	3R	12824613	12824631	AAATCCTTGTCACAGGAGG		59	12824688	12824766	TCCTTCATCCTGGATATGGA		59	NA	
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0083265,FBtr0083263	3	2	8	83	3R	12118541	12121395	CTATTAGGATCACATGCAGAG		57	12121440	12121458	CAACTCCATAACAAGAGCA		57	NA	
Drosophila melanogaster	50	CG18522	FBgn0038347	FBtr0083154	3	1	1	85	3R	11361063	11361083	CCATGGAGGGAAAGATTATCC		59	11360776	11361018	GGGCATAATCTTGTAGGAGTC		59	NA	
Drosophila melanogaster	50	CG4338	FBgn0038313	FBtr0083066	1	1	1	60	3R	11102006	11102026	TTAAGGTGCAGAATGAGTACC		59	11102048	11102066	AGATCCCTAGGCTTATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4210	FBgn0038302	FBtr0083049,FBtr0083050	2	2	2	94	3R	11040075	11040153	ACAACGATACTGATCAGGC		59	11040211	11040229	GACATAGATGTCCTCGACG		59	NA	
Drosophila melanogaster	50	CG6934	FBgn0038289	FBtr0083039	1	1	1	63	3R	10937536	10937554	ATCTGGATGTACGGAAGTG		58	10937491	10937509	TTCATTTGCTAACCCAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3563	FBgn0038259	FBtr0082989,FBtr0113234,FBtr0082988	2	3	3	124	3R	10616865	10616883	GTTACAGTAGTGCCTCGAC		59	10616970	10619179	ATAAGTGGCTTGTATCTTGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	Neu3	FBgn0051314	FBtr0100189,FBtr0082973	2	2	2	83	3R	10496557	10497104	TATCTGCTTAAGCAGGCAG		59	10496492	10496510	GTAGTCGTGACTATGGTCG		59	NA	
Drosophila melanogaster	50	trx	FBgn0003862	FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949	1	5	5	81	3R	10091189	10091208	ATGTTGGAGTCTTCAGATCC		59	10091050	10091145	TCGATAACCATTTCACCCG		59	NA	
Drosophila melanogaster	50	primo-2	FBgn0040076	FBtr0091746,FBtr0091745	2	2	2	67	3R	9536736	9536948	CCTATTATGACATTGGTGAAGC		59	9536690	9536708	ATTCCTACACGCTATGCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Task6	FBgn0038165	FBtr0082850	3	1	1	138	3R	9496547	9496640	TAACCACTATAGGCTTTGGC		59	9496428	9496446	ACTAACAAGTTCAGCGAGG		59	NA	
Drosophila melanogaster	50	CG5538	FBgn0038052	FBtr0082631	1	1	1	60	3R	8274089	8274109	TTGGGACTAGACAATAACGTG		59	8274130	8274149	GTTTGGTATAGGTCCATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17207	FBgn0038051	FBtr0082682	3	1	1	61	3R	8264399	8264417	ATAATGCTGAGGTCTCGAC		58	8264356	8264374	CAGTTCACGAAGGTAAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17207	FBgn0038051	FBtr0082682	1	1	1	60	3R	8264530	8264548	CCGGAAAGAGGATTTATGC		58	8264488	8264506	GCTATCCGAAGGTAACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33098	FBgn0053098	FBtr0082580,FBtr0082579	3	2	3	123	3R	8213638	8213708	AGCTGAAGGAAGTCTTCTC		58	8213794	8213813	ATCATCTGTTCCAGTAGCTG		59	NA	
Drosophila melanogaster	50	CG17639	FBgn0038029	FBtr0114565,FBtr0082576	1	2	2	99	3R	8210530	8210937	TCACGGACTACTATTTCCC		58	8211000	8211018	AAGATTGTGTTTAGCCAGC		58	NA	
Drosophila melanogaster	50	Tk	FBgn0037976	FBtr0082488	1	1	1	60	3R	7820877	7821100	CTCCGATTCCTATGACTTGAG		59	7820837	7820856	AAATTTGCTGTTGAAGTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	HisCl1	FBgn0037950	FBtr0082470	2	1	3	156	3R	7614596	7614614	TATAGACGTCTGGATGTCG		57	7614734	7614804	TAGTGCAGACTTTAGGTCG		58	NA	
Drosophila melanogaster	50	l(3)neo38	FBgn0086910	FBtr0082533,FBtr0110877,FBtr0110876	2	3	3	125	3R	7596969	7596990	AATATCTCCATACCGTACTCAC		58	7595815	7596883	CTGGTTGAGGACTTCTTCC		59	NA	
Drosophila melanogaster	50	CG12420	FBgn0037797	FBtr0082222	1	1	1	172	3R	6049093	6049111	TATGAGTACGCGAAAGCAG		59	6049376	6049394	TAAAGCAATCCGTCACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5361	FBgn0037786	FBtr0082201	2	1	1	60	3R	5900895	5900915	TTATTGGAAGGATAAGGTGGC		59	5900855	5900874	CTCATCAATGCCCTTATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210	1	5	8	80	3R	5834567	5835034	TCTACGAAGGTTCAAACCG		59	5834505	5834523	GTCGGTGGATATCTCAGTG		59	NA	
Drosophila melanogaster	50	CG8358	FBgn0037727	FBtr0082081	2	1	1	60	3R	5501442	5501460	GCGGAATTCATGAAATCCT		58	5501484	5501502	ACTCGTAGAAATTCTCGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11963	FBgn0037643	FBtr0113206,FBtr0081957	1	2	2	100	3R	4767465	4767485	GGTATTATGCGTTGTGATGTC		59	4767547	4767633	ACTTTGGTTCCCTGAAGAC		59	NA	
Drosophila melanogaster	50	Pif1A	FBgn0027540	FBtr0091714,FBtr0091715	1	2	2	98	3R	4612636	4616239	GATGTCAAGATAACCCAACTC		58	4612558	4612576	ACTGCTCTTCATTGTTGTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG11753	FBgn0037603	FBtr0081879	2	1	1	141	3R	4478997	4479086	TCGAATACCATGAGATCCAC		58	4479190	4479276	AAGGTGCAACTAAAGTCCA		59	NA	
Drosophila melanogaster	50	CG7549	FBgn0037559	FBtr0110951	2	1	3	90	3R	4083213	4084123	TCGGTTTAGGTTTCAGTCTG		59	4084176	4084194	TTGTAGCTAATAGCCCGTC		58	NA	
Drosophila melanogaster	50	CG18746	FBgn0042103	FBtr0081775	2	1	1	85	3R	3615386	3615468	TCTAGTTCCAGCATAGAGGT		59	3615320	3615338	GAAGAGGGACATGTGATGG		59	NA	
Drosophila melanogaster	50	alpha-Est7	FBgn0015575	FBtr0081550	3	1	2	180	3R	3346786	3346863	GGCTTTGGGATTTATGAGTC		58	3346625	3346644	CATCATGTAGTGAGTGGAGG		59	NA	
Drosophila melanogaster	50	RacGAP84C	FBgn0045843	FBtr0081581,FBtr0081580	2	2	2	60	3R	3112952	3112970	GTCTCAGTTCTTGGAGGTC		59	3112994	3113012	CTCAAAGTCATAGGTGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1227	FBgn0037491	FBtr0081598	1	1	1	80	3R	3074116	3074190	ATTTACACAGAGGACATGCA		59	3074055	3074073	AACACTAAACACGAATGGC		58	NA	
Drosophila melanogaster	50	bcd	FBgn0000166	FBtr0081666,FBtr0081664,FBtr0081667,FBtr0081668,FBtr0081665	2	5	5	76	3R	2582456	2582474	TGGATACGATAATGCAAGC		57	2582398	2582416	CTAATTGAAGCAGTAGGCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gasp	FBgn0026077	FBtr0112922	1	1	2	82	3R	1919999	1920017	CACAGTGTTCAAGATTGGC		59	1915402	1919953	CATAGTAATCCTCGCACCC		59	NA	
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078675,FBtr0078672	3	2	5	166	3R	1586675	1587377	ATTCGGACATCAAATCGTG		58	1586471	1586489	GGATGACATCTACCTTGCA		59	NA	
Drosophila melanogaster	50	CG2182	FBgn0037360	FBtr0078730,FBtr0078731	1	2	2	92	3R	1483649	1483875	CTGCCGTACAAAGATTGAG		58	1483575	1483593	ATATGAGCGTACAACTGGG		59	NA	
Drosophila melanogaster	50	Or83b	FBgn0037324	FBtr0113193,FBtr0078794	1	2	2	86	3R	1233862	1233880	TCGGATACCTAGGATACGC		59	1233433	1233812	CCATGACGGATGAACTCTC		59	NA	
Drosophila melanogaster	50	CG1115	FBgn0037299	FBtr0078777	1	1	1	88	3R	1052510	1052528	AAATACTTCTCTGCCAGCC		59	1052580	1052598	GACCCATGATTGGGTAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338	1	5	15	165	3R	110121	120861	CGTTAAAGGAGGTGATGGA		58	120990	121008	CTTATCGCGAATGTCTTGC		59	NA	
Drosophila melanogaster	50	snoRNA:Me18S-A1806	FBgn0086074	FBtr0114350	3	1	1	60	3L	7632834	7632852	TTTACTACCCGAACCATCG		59	7632875	7632894	TGAATCAGAATTACGTCCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CkIIalpha	FBgn0000258	FBtr0070042,FBtr0070043	3	2	3	269	3L	23093381	23093399	GGATATCATACGAGACGGA		57	23095396	23095414	ATATTCATCCGGTTTGTGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	jim	FBgn0027339	FBtr0078581	1	1	3	172	3L	22790350	22790371	GTGTAAGAGAAGTAATGAGCAG		58	22789580	22790217	CGAATTTGCGAAATTTGCC		59	NA	InUTR
Drosophila melanogaster	50	SPoCk	FBgn0052451	FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532	3	4	4	61	3L	22771883	22771901	AAATGGTGACTGGAGATGC		59	22776520	22776539	ATCGATACCGATGAGATTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32447	FBgn0052447	FBtr0078460,FBtr0078461	3	2	2	187	3L	21687570	21687588	CCCGTTCTGCTATTATCCT		58	21686807	21687419	GTCGTATAAACATGCCTGG		58	NA	
Drosophila melanogaster	50	CG12452	FBgn0037029	FBtr0078261	1	1	1	267	3L	20812278	20812296	TCAGCATCAGCAGAATCAG		59	20812527	20812545	CTCAAGTTCCTGTTCACGT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234	1	10	10	72	3L	20826943	20826961	CAAATGCGTCAAACTGGAC		59	20827129	20827147	GTTGCGTTTGAGTATGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234	3	10	10	74	3L	20826941	20826959	CTCAAATGCGTCAAACTGG		59	20827129	20827147	GTTGCGTTTGAGTATGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32225	FBgn0052225	FBtr0074845	2	1	1	155	3L	20297929	20297947	CTTCATGTTCAAGGACAGC		58	20297735	20297810	TTGAAGTATCTCCAACCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6933	FBgn0036952	FBtr0074855,FBtr0074854,FBtr0074853	1	3	3	60	3L	20211887	20211905	GTACCCATAACCGATGTGG		59	20211845	20211863	TTCTTGCAACCCTCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33255	FBgn0053255	FBtr0074997	1	1	1	142	3L	19417130	19417148	GCTTCTGAGATTGCTTCCT		59	19417821	19417839	CCTTGGAGTCCATACTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6852	FBgn0036820	FBtr0075063	3	1	2	109	3L	18862861	18862879	GATGGCAACGAAATTCAGG		59	18863017	18863035	ATTCGTTTGATGTCAGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5290	FBgn0036772	FBtr0075152	2	1	1	92	3L	17904860	17904933	AATCAAAGGTCCTGATTTGG		58	17904787	17904805	TAAACTGCTCATACAGGGA		57	NA	
Drosophila melanogaster	50	CG6497	FBgn0036704	FBtr0075250	1	1	1	60	3L	17246847	17246865	CGTACATAGCGCTCTACAG		59	17246805	17246823	CATTGGTAGTGCAAGTAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13028	FBgn0036676	FBtr0075261	1	1	1	60	3L	16916581	16916599	TTCAAACCCAATGGATCAC		57	16916623	16916641	GTAGGTTACTGCCACTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lmpt	FBgn0036672	FBtr0089452,FBtr0089457,FBtr0089456,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459,FBtr0089455	1	8	8	80	3L	16914082	16914100	GGAGCAGGAGATCTATTGC		59	16914143	16914290	GAGGTGATGACCTTATTGCA		59	NA	
Drosophila melanogaster	50	Lasp	FBgn0063485	FBtr0100145	3	1	2	121	3L	16674002	16674020	ATCAAACAGAACACGAAGC		58	16673020	16673917	TATTCCGATTCATTGCTGC		58	NA	
Drosophila melanogaster	50	CG32158	FBgn0052158	FBtr0075407,FBtr0113426	1	2	7	81	3L	16513216	16513234	CAAACATTATCGACGCCTC		58	16511681	16513171	CTCTCGCATCCTGTATCTG		59	NA	
Drosophila melanogaster	50	CG4729	FBgn0036623	FBtr0075417,FBtr0075419,FBtr0075418	3	3	4	82	3L	16377075	16377093	ATCAAGCCCATAGACAAGC		59	16376951	16377030	GACACGAAGATAAGTTGGGA		59	NA	
Drosophila melanogaster	50	PDCD-5	FBgn0036580	FBtr0075483	3	1	1	190	3L	16224983	16225001	TGTCGGATAGTGATTTGGA		57	16224503	16224579	TTTGAGGGTATTAAGTCGTG		57	NA	
Drosophila melanogaster	50	CG13073	FBgn0036577	FBtr0075486,FBtr0075485	3	2	2	68	3L	16206247	16206266	TCATACTGTACACGGAAGTC		58	16206198	16206216	ACTTCGAATGGAAATCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9425	FBgn0036451	FBtr0075693,FBtr0075692	1	2	2	73	3L	14786338	14786356	ACCAGAAGGTGATCATGAG		58	14786871	14786889	GTCCAGTGTATAACCACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13476	FBgn0036441	FBtr0075687,FBtr0075686	2	2	2	71	3L	14698767	14698788	CAGAAAGCTCTAGTTGATATCG		58	14698820	14698838	GGCATTATGGATTGTGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nan	FBgn0036414	FBtr0089524	3	1	1	175	3L	14179634	14179711	CGGTTGAATATGACTGAGGA		59	14179478	14179497	TTGTTATCGGAACATTCCGA		59	NA	
Drosophila melanogaster	50	CG17359	FBgn0036396	FBtr0075787	3	1	1	60	3L	13992022	13992041	GCCATCAGTACTTTGAACAG		58	13991981	13992001	CAATACTCTATATCGTCCAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	26-29-p	FBgn0028967	FBtr0075766	1	1	1	73	3L	13988816	13988834	GTACAAGGACGAGATTCCC		59	13988870	13988968	CAGATTGATCTTTCACCGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6947	FBgn0036233	FBtr0076045	3	1	1	87	3L	11972484	11972569	GAACCAGAGGATCCTTCTG		59	11972618	11972638	CATTGATGGAAGGATATGGTG		58	NA	
Drosophila melanogaster	50	CG11570	FBgn0036230	FBtr0076065	1	1	1	60	3L	11950333	11950353	GATTCTACGAGACACGTATCC		59	11950293	11950312	TGGTATACTGAACTCCACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11588	FBgn0036221	FBtr0076038	1	1	1	60	3L	11915368	11915388	CAACTACGGAGAATATGATGG		57	11915410	11915428	CTACTACTTTCGGTTGGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mtTFB1	FBgn0036197	FBtr0076112,FBtr0114551,FBtr0114552	2	3	3	60	3L	11702737	11702756	ACGGACAAGATAGTCAAGTC		59	11702778	11702797	CCACCTCAAGAACTAAATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7573	FBgn0036153	FBtr0076170,FBtr0076171	1	2	2	100	3L	11305505	11305523	TGTTGGGTTTGATTTGTGC		59	11305639	11305660	CTCGCTTAACATATGAATAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mocs1	FBgn0036122	FBtr0076206,FBtr0076205,FBtr0076204	1	3	3	102	3L	11065459	11065477	TTGGTGGATCTCATTGGAG		58	11065694	11065712	CGTGGTGATACGAATAAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	tna	FBgn0026160	FBtr0076267,FBtr0112923,FBtr0076268	2	3	3	119	3L	10865268	10865287	AAACTATCAGCACAGTCCAG		59	10865369	10865454	ATTTCTTCGCTGTTGTCCA		59	NA	
Drosophila melanogaster	50	CG32062	FBgn0052062	FBtr0076290,FBtr0076289	3	2	5	225	3L	10561698	10564184	AACAGAAGACACAGTACGAG		59	10566575	10566593	CTCTGTTGTGATTCTGCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	alphaTub67C	FBgn0004236	FBtr0076393	1	1	1	60	3L	9675308	9675328	GATTTCTGGAAAGGAAGATGC		59	9675350	9675368	CTTGCCAATGGAGTAACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34272	FBgn0085301	FBtr0112467	3	1	1	60	3L	9588180	9588199	TCAGGAGGATCATTTCTACG		58	9588219	9588240	GAACTCATCGCATAAATCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MTF-1	FBgn0040305	FBtr0113323,FBtr0113322,FBtr0113324,FBtr0076460,FBtr0076459	1	5	5	188	3L	9429057	9429075	ATACGAATGTGAGGTGTCC		59	9429335	9429353	TCTTCCGGACATTTGTAGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Hsp22	FBgn0001223	FBtr0100559,FBtr0100558	1	2	2	92	3L	9367566	9367584	CTACAGCGAGCTAAAGGTC		59	9367640	9367658	CTATAGCCACCTTGTTCGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Argk	FBgn0000116	FBtr0076546,FBtr0112792,FBtr0076544,FBtr0076545,FBtr0112791,FBtr0076543	1	6	6	65	3L	9042989	9043007	AGATGGAAAGCAAGGTCAG		59	9042942	9042960	GGTAGAACTTGCCCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Unr	FBgn0035895	FBtr0114592,FBtr0076661	1	2	2	80	3L	8430189	8430208	ACGATGTGGAAGGTAATGTC		59	8430062	8430149	CTAGATTACCTCTTTGGTTCGT		59	NA	
Drosophila melanogaster	50	DNApol-alpha50	FBgn0011762	FBtr0076603	2	1	1	80	3L	8336219	8336294	CTATCGTATGGATCATCCGA		58	8336335	8336355	ACGTATGTAGATATCGTCCTG		58	NA	
Drosophila melanogaster	50	CG13672	FBgn0035862	FBtr0110798	3	1	1	124	3L	8242040	8247971	ATGTCATAAGAGCCGAGAC		58	8248059	8248077	GGAGCATTCTATGAGTCCG		59	NA	
Drosophila melanogaster	50	CG7375	FBgn0035853	FBtr0076722	3	1	1	98	3L	8189973	8190251	TCTATTCTTGGAACCCAATCC		59	8189895	8189915	GCCTTCTTTACATTGTTCTCG		59	NA	
Drosophila melanogaster	50	mthl7	FBgn0035847	FBtr0076726,FBtr0076727	2	2	2	108	3L	8172115	8172135	CTGACAGCCATTTACATTAGG		58	8171964	8172045	ACTGTAGGTAAGTCTGGCT		59	NA	
Drosophila melanogaster	50	CG7565	FBgn0035833	FBtr0076738	3	1	1	81	3L	8082713	8082789	GTAATACGACTACTAGCTTGC		58	8082652	8082671	TAACTCTTGATGCCAATGTC		57	NA	
Drosophila melanogaster	50	Ect4	FBgn0085402	FBtr0112598,FBtr0112601,FBtr0112599,FBtr0112602,FBtr0112600	3	5	5	139	3L	8097909	8097988	TCTTCTCAAGGTGCATCTG		59	8098088	8098109	CATCGGGAGTTAATACTAAGAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	RNaseX25	FBgn0010406	FBtr0076752	1	1	1	60	3L	7964068	7964086	CTTCGGTGAATGAGAAGAC		57	7964110	7964128	GGGAAACCATCGAATTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33279	FBgn0053279	FBtr0076858	2	1	1	60	3L	7446599	7446767	CCTTAAGCATTGAAACAGC		57	7446791	7446809	ATCAGGCTCAAAGTATTGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG10467	FBgn0035679	FBtr0077063	3	1	1	60	3L	6087171	6087189	CAGGTGTCTAAGAACCGAG		59	6087129	6087147	TATCGAAGCCTACAAAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6462	FBgn0035663	FBtr0077039	2	1	1	60	3L	6030644	6030662	TGGAGGAGTTACAAGTCAC		58	6030685	6030704	CCAAATCCCAAGTAATCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lama	FBgn0016031	FBtr0077161,FBtr0077160,FBtr0077159	3	3	3	97	3L	5338824	5338842	AACTTATCCGGATTGGGTG		59	5338685	5338764	AGGAAATGGTATTGGACCAC		59	NA	
Drosophila melanogaster	50	Aats-ala-m	FBgn0028962	FBtr0077168	2	1	1	104	3L	5140149	5140227	TACAGTACAATCGTCATGC		57	5140295	5140313	ACTTATTCTGAAGCACAGC		57	NA	
Drosophila melanogaster	50	Con	FBgn0005775	FBtr0073375	1	1	1	80	3L	4952941	4952960	CTGACGTTCTACACATTCCA		59	4940096	4952900	GAATTTGTTGTCTGACACGAG		59	NA	
Drosophila melanogaster	50	CG13708	FBgn0035577	FBtr0073358	2	1	1	60	3L	4831252	4831270	GATCAATGGATTCCAGCAC		58	4831210	4831229	CAGATCGTTGTGACATAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13711	FBgn0035572	FBtr0073347	1	1	1	60	3L	4758143	4758163	GTGGGATATCACCTGTATCTG		58	4758182	4758203	TCATGTACTCCACATTCTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13720	FBgn0035555	FBtr0073327	1	1	1	60	3L	4499087	4499105	TGATAAACTCAGAGGGAGG		57	4499045	4499063	GACGAGGGTTTAGTTTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14998	FBgn0035500	FBtr0073269	1	1	6	83	3L	4129782	4131130	CGACAAGATGAAGATAGCGT		59	4129718	4129736	TATTGTCGGCATAAGGTCC		59	NA	
Drosophila melanogaster	50	CG14982	FBgn0035477	FBtr0073163	2	1	1	105	3L	3944609	3944808	CGATATAGATACAACTACCAGC		57	3944874	3944892	TATTGATGTTGAAGTCGCC		57	NA	
Drosophila melanogaster	50	CG14959	FBgn0035427	FBtr0073050	2	1	3	164	3L	3267257	3267275	CTTCTATGCCGACATGGAG		59	3267539	3267619	TAGAACCATTTGGGTGACTC		59	NA	
Drosophila melanogaster	50	Shab	FBgn0003383	FBtr0072975,FBtr0112829	1	2	4	85	3L	2941551	2941572	CTCCTTCCATCATATCAATCTG		58	2941618	2942577	TTGTTTGCTTTCCTGTGTC		58	NA	
Drosophila melanogaster	50	CG33234	FBgn0053234	FBtr0113457,FBtr0113456	1	2	2	67	3L	2662076	2662161	GTGGCTTCTTTATTGCTGC		59	2662189	2662210	GGAGATCTTTGTGAATTCACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	pUf68	FBgn0028577	FBtr0072710,FBtr0072707,FBtr0072709,FBtr0072708	3	4	4	158	3L	1498415	1498433	GATCCTCTACTGCAAGCTG		59	1498213	1498295	GTAATAGATCGACCCACTCTC		59	NA	
Drosophila melanogaster	50	CG9205	FBgn0035181	FBtr0072621	2	1	2	237	3L	1035448	1035564	CAATGTGATGAAGGGATGG		58	1035765	1035783	CCTCAGCTTTACCGTATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	trio	FBgn0024277	FBtr0072645,FBtr0072644	3	2	6	182	3L	1024401	1024477	GAAACCAAGCAGATTTGGG		59	1024237	1024255	AAAGCTAGCCAGTGAACAG		59	NA	
Drosophila melanogaster	50	Glut1	FBgn0025593	FBtr0112911,FBtr0072617,FBtr0072616,FBtr0112909	2	4	6	80	3L	982228	982246	CCTGCATCTCTATGGTCTG		59	982288	983865	TCGATCATTTCCTTGATCAGG		59	NA	
Drosophila melanogaster	50	CG13885	FBgn0040689	FBtr0100297	1	1	1	152	3L	391609	391627	CTATACACTCGCATCACCA		58	390988	391495	GCACTTCATAACTGTAGTAGG		57	NA	
Drosophila melanogaster	50	mthl10	FBgn0035132	FBtr0072573	1	1	2	77	3L	335275	335293	TAATTGCGAGTGAGAACAG		57	335171	335189	TATAGTTGGACCAAGCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	RhoGEF3	FBgn0035128	FBtr0089651,FBtr0089654,FBtr0089653,FBtr0089652	2	4	4	82	3L	302289	302366	CCATTTGTGATGGTTACCTG		58	302411	302429	GTTGGAGAAGATAAGCCGA		59	NA	
Drosophila melanogaster	50	Mtch	FBgn0027786	FBtr0072477,FBtr0072478,FBtr0072479	2	3	3	123	3L	185191	185209	AAATTGGTGGGTTCTCTGG		59	185296	185377	ACTGGACGTACAATTCCTC		58	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-1347b	FBgn0083053	FBtr0113514	1	1	1	74	2R	14030551	14030572	GACTAAGATTCATAGTTGCCAG		58	14030607	14030625	GTTATGCAGATGGTATGCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Peb	FBgn0004181	FBtr0072454	3	1	1	60	2R	21063728	21063748	ATCCATTAGGTCCTTATTGGC		59	21063688	21063707	ATCGGTGGAGAATTAATTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12849	FBgn0035068	FBtr0072376	3	1	1	132	2R	20685629	20685647	TACTTGAAGTCCGTGAACC		59	20685792	20685810	CAAAGTTGTACAGGACTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4763	FBgn0034910	FBtr0072238	1	1	1	97	2R	19711252	19711270	TATATTCGACGACCTCCGA		59	19711077	19711191	AGATGGTGATTCCAACTCC		58	NA	
Drosophila melanogaster	50	Gr59e	FBgn0041233	FBtr0072115	1	1	1	170	2R	19428830	19428848	TGCAGAGGACCATTAATCG		59	19428618	19428636	TTAGCGACTTATTGCCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	bw	FBgn0000241	FBtr0114457,FBtr0072117	3	2	2	187	2R	19425227	19425302	GCATCTGTACTTTATGTCCC		58	19425059	19425077	ATATGGGATCGGTGATCAG		58	NA	Nonspecific
Drosophila melanogaster	50	CG5360	FBgn0034873	FBtr0072058	1	1	1	92	2R	19412965	19412983	TTTCGACCATCTCACAGTC		59	19413036	19413119	GTTAAGATTGTAGCTCAGTCCA		59	NA	
Drosophila melanogaster	50	CG9861	FBgn0034844	FBtr0072002	1	1	1	147	2R	19212393	19212412	ACTGCATTCGATACTTACCG		59	19212575	19212665	CTGTGGAATCCGTCTTCTC		59	NA	
Drosophila melanogaster	50	CG30196	FBgn0050196	FBtr0071927	1	1	1	60	2R	18542536	18542554	TCAATCACTACTGCAGCTC		59	18542494	18542514	TACCAACTCAGAGTGATATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4329	FBgn0034745	FBtr0071939,FBtr0071940	2	2	2	60	2R	18497748	18497767	TGTCTTGCAGAAGAAATTCG		58	18497707	18497727	AACTTCCTCTAGGAGATTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vrp1	FBgn0034695	FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104	3	7	7	89	2R	17998431	17998841	CAACCTAAATATCTCGTTAGGC		58	17998363	17998383	GTTAGACTGCTGTTTAAGGAC		58	NA	
Drosophila melanogaster	50	CG34029	FBgn0054029	FBtr0100084	2	1	1	62	2R	17858384	17858402	AGGATCTTCGATCACAGAG		58	17858340	17858358	AAGTCATCCACGATTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13492	FBgn0034662	FBtr0071741,FBtr0071742	2	2	2	93	2R	17715211	17715301	AGACACGCATCATAAGTGG		59	17715136	17715154	CAGTTTCCTGTTCCATCGA		59	NA	
Drosophila melanogaster	50	CG10527	FBgn0034583	FBtr0071541	3	1	1	131	2R	16959140	16959158	GATGGGAGAACACCAAGTC		59	16959027	16959045	TGATGACATTGTCGTACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpr	FBgn0040726	FBtr0086238	3	1	1	102	2R	16613623	16613642	CTACTTCGACTTTGATGTGC		58	16613707	16621683	CCAAGAGACGTCCTTATCG		59	NA	
Drosophila melanogaster	50	Obp57b	FBgn0043534	FBtr0086293	1	1	1	60	2R	16392057	16392076	TTAAATGTCAGCTGGAAAGG		58	16392099	16392117	AAATCCATTCTGCCTTGAG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	hrg	FBgn0015949	FBtr0111010,FBtr0086484,FBtr0086483	3	3	3	89	2R	15554704	15554782	AAGATTTCAAGTCTGGGATCC		59	15554635	15554654	GAATTCTGTTGTGGGTATGC		59	NA	
Drosophila melanogaster	50	CG15120	FBgn0034454	FBtr0086463	3	1	1	66	2R	15387273	15387291	GCAATTAATATTGCCGCTG		57	15387431	15387449	CAATGTCGTGCACATTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mei-W68	FBgn0002716	FBtr0086461	2	1	1	145	2R	15345799	15345817	TGACAATCCTCTGCTAGTC		58	15345984	15346002	TCATCAGCAGCCTTAAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30121	FBgn0050121	FBtr0086644	1	1	1	60	2R	14628012	14628031	ACAGTCCTTGAGATGTTTCC		59	14627971	14627989	GTTCAGGTTCTGTCAGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10933	FBgn0034264	FBtr0086860	3	1	1	95	2R	13611393	13611471	GGTCTAAGTCCTGATTCCA		57	13611529	13611548	GATATTAACCAGCTGTCCAC		58	NA	
Drosophila melanogaster	50	CG4945	FBgn0034137	FBtr0087100,FBtr0087099,FBtr0087098	3	3	3	132	2R	12454486	12455296	GAATTGGAGAAGATCCAGC		57	12455392	12455410	GTTTGGGTACAGCTTTCAG		58	NA	
Drosophila melanogaster	50	mrj	FBgn0034091	FBtr0087193,FBtr0087196,FBtr0087194,FBtr0087195	2	4	5	150	2R	12093319	12093419	GAAGTGAAGAAGGCATATCG		58	12092510	12092528	ACTCATCGTATATGCGACG		59	NA	
Drosophila melanogaster	50	CG34365	FBgn0085394	FBtr0112590	3	1	4	169	2R	11304328	11306865	CTTCCAAAGGTTCTTCGGT		59	11306998	11307016	GAATGCCTCGTTCAAACTG		59	NA	
Drosophila melanogaster	50	RpI1	FBgn0019938	FBtr0087511	3	1	1	81	2R	10487797	10487871	TATTAAAGAACGCGTTGGC		58	10487734	10487752	CAGATAACGACGACATTCG		58	NA	
Drosophila melanogaster	50	CG17389	FBgn0033938	FBtr0087490	2	1	1	144	2R	10337028	10337294	TTTACTCAGCAATCAACACC		58	10337401	10337419	CTCTCAGTCTCTTCGACAG		58	NA	
Drosophila melanogaster	50	CG6329	FBgn0033872	FBtr0087634,FBtr0087633,FBtr0087635,FBtr0087636	2	4	4	142	2R	9717361	9718064	TGCATACAAGTGACCACTG		59	9718168	9718188	TATTTGTCCTTCAGATGCTCC		59	NA	
Drosophila melanogaster	50	CG6197	FBgn0033859	FBtr0087623	2	1	1	139	2R	9483353	9483434	CATTGCTCACAGGTTTGTG		59	9483537	9483555	GTATTGTAAGTGGCCTGCA		59	NA	
Drosophila melanogaster	50	CG33528	FBgn0053528	FBtr0091491,FBtr0091492,FBtr0091493	2	3	3	115	2R	9407613	9407631	CTTTAACGTCCAACGTTCC		59	9407452	9407536	GTAATAGGTCTCGTTCTCCTC		59	NA	
Drosophila melanogaster	50	CG30061	FBgn0050061	FBtr0087711	3	1	1	82	2R	9324201	9324219	GAACCATTTGGGATCATCG		58	9324137	9324155	AGTGTCGAAACCATGAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17041	FBgn0033822	FBtr0087749,FBtr0087751,FBtr0113080,FBtr0087750	1	4	4	221	2R	9151042	9151060	ATAATGTGGCAAGACCCTC		59	9151379	9151397	GTTCTCAATGGTGTTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4712	FBgn0033818	FBtr0087757,FBtr0087758	3	2	2	157	2R	9136975	9136993	GATGTAGAAACGGTTTGCG		59	9136767	9136787	CGATTGTGCTTAGTCATATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nmda1	FBgn0013305	FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876	2	6	6	91	2R	8765640	8765660	CGAACTTCATATTCTTGGGTC		58	8765511	8765587	CATGAGAACCTCTTTCGGA		58	NA	
Drosophila melanogaster	50	CG8776	FBgn0033764	FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869	3	5	5	98	2R	8548250	8548271	CATAAGGTCAACTTCTATAGCC		58	8548117	8548192	TACCAGAAAGCTGAAGAAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930	1	5	6	105	2R	8335509	8335527	ATCATAACCTCAACAAGCG		57	8335595	8335676	GAGTTATCACTTGTGTACGC		58	NA	
Drosophila melanogaster	50	CG8520	FBgn0033734	FBtr0087926	2	1	1	124	2R	8311501	8311519	ATCAGGATGATCCTAACGC		58	8311604	8311682	CTTTCGATGAATTTGGGTACAG		59	NA	
Drosophila melanogaster	50	SIP2	FBgn0061197	FBtr0089669,FBtr0089671	3	2	4	179	2R	8191213	8191231	TAATCTCTACGGGACCCTC		59	8190827	8191070	TTGGCATAATTACGGAGGG		59	NA	
Drosophila melanogaster	50	Tango3	FBgn0033651	FBtr0088065,FBtr0088066	1	2	2	60	2R	7676018	7676037	GGAATGTGGGTCAGTATCTC		59	7675977	7675996	AAAGATAATTCCCGGTTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7777	FBgn0033635	FBtr0088136,FBtr0088137	1	2	2	244	2R	7327365	7327484	CTCAATGAGCTCAAATCCA		57	7327753	7327771	ATCAAGCTAATTCGTCCTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	BBS4	FBgn0033578	FBtr0088202	1	1	1	91	2R	7023914	7024339	CGAACACTATACATAATGGGC		58	7024392	7024410	TAAATCTCGTGGTCCTGTC		58	NA	
Drosophila melanogaster	50	CG12943	FBgn0033572	FBtr0088198	2	1	2	84	2R	6792307	6792325	TGGAATCATCGGCTATTGG		59	6792372	6792512	CTGGGAAAGGATTTCATCCT		59	NA	
Drosophila melanogaster	50	CG7220	FBgn0033544	FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217	2	5	5	110	2R	6624696	6624714	CATGTTGAGTAGTTGTCGC		58	6624788	6624871	ACAGAATCATCGTGGTACC		59	NA	
Drosophila melanogaster	50	Ndg	FBgn0026403	FBtr0088349,FBtr0088350	3	2	2	117	2R	6208455	6208474	CAAAGGATACCATTGAGGTG		58	6208554	6208634	AACAGTTTCTCCCTGTAGG		58	NA	
Drosophila melanogaster	50	Or46a	FBgn0026388	FBtr0088330	1	1	2	81	2R	6028117	6028138	GAGGATTAGGACACTTAATCCA		59	6029494	6029512	GAAGTAGCTGTAGGAGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1407	FBgn0033474	FBtr0088436,FBtr0088435	2	2	2	99	2R	5919790	5919808	ATGCTTCTGTTCTACCACC		59	5919621	5919728	GTATCCTCCATTGATCTGGT		58	NA	
Drosophila melanogaster	50	CG18446	FBgn0033458	FBtr0088376	2	1	1	60	2R	5759618	5759637	ATAACACCCTTTGTTCAGTC		57	5759660	5759678	ATAAGTGCTGATCTGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pkn	FBgn0020621	FBtr0112897,FBtr0088602,FBtr0088604	3	3	6	100	2R	5144983	5145001	TATCTGTATCGTGGTAGCA		57	5143201	5144919	AACTGTGGTATAACCTCCA		57	NA	
Drosophila melanogaster	50	ltd	FBgn0002567	FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934	2	5	5	110	2R	5066194	5066212	ATGGATGAGTATGTGAGGG		58	5066041	5066123	GATGAGTATCTTATTCACGAGG		57	NA	
Drosophila melanogaster	50	CG8736	FBgn0033308	FBtr0088731	1	1	1	60	2R	4482463	4482483	GAACCCAATTGGAAGTTTGAG		59	4482423	4482442	CTTATGGTAATCCTTGCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sPLA2	FBgn0033170	FBtr0088972,FBtr0088973,FBtr0100138	2	3	3	151	2R	3330818	3330836	CGAGATTATCGAGTCCCAC		59	3331016	3331036	CATAGTAGATACGACCCAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111051	1	1	60	125	2R	3219880	3228062	CTGATTGTGAACGTACCTC		57	3219773	3219792	TTTCTTCCATGTAACTTGGG		57	NA	
Drosophila melanogaster	50	Spn43Ab	FBgn0024293	FBtr0100356,FBtr0089054	2	2	2	87	2R	3039482	3039501	ATTTCATTAACGCAGTGGAG		58	3039348	3039434	CCTTTAAGCAATCCAGTTTCC		59	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086205,FBtr0086204,FBtr0086197,FBtr0086201,FBtr0086196,FBtr0086198,FBtr0086202,FBtr0086199,FBtr0086200,FBtr0086203	3	10	11	117	2R	2764992	2765010	GTACGAAACAAAGGTAGCG		58	2764829	2764847	AAATTCAGCCTGATCGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9422	FBgn0033092	FBtr0086120,FBtr0086121	2	2	2	101	2R	2579670	2579690	TATAGTCACACGCCAAATACC		59	2579808	2579827	AAATCAGTGGACGTATTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30432	FBgn0050432	FBtr0086002	1	1	1	60	2R	2085641	2085662	GGTTGGGATTATATGTTTGGTG		59	2085602	2085620	GTCATTGAGACGATAGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11163	FBgn0025693	FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053	3	4	4	80	2R	1662572	1662645	TGCATCTCGTTACAGACTC		59	1662510	1662530	TATATCTTGGGCTGGATACGA		59	NA	
Drosophila melanogaster	50	CG30441	FBgn0050441	FBtr0086093	2	1	1	133	2R	1239541	1239559	TCCAAACCTTTCCAGTAGC		59	1239426	1239444	CCTTATCGACATCTTTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR33319	FBgn0053319	FBtr0089858	3	1	1	60	2L	20929336	20929357	TTATAGACTCGACTATGTGGAG		58	20929375	20929396	TACCTTATGTAATAGACGGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snRNA:U2:38ABa	FBgn0003922	FBtr0081313	1	1	1	61	2L	19815772	19815793	CCTTATGGCTAAGATCAAAGTG		58	19815732	19815753	GAGGAACTATCAGATGTTAAGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	snmRNA:158	FBgn0065104	FBtr0091750	3	1	1	60	2L	5206233	5206251	AAGAAGGATCACTCTACCC		57	5206274	5206293	CTATCCCATCTAACCCTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cht3	FBgn0022701	FBtr0111127	3	1	1	86	2L	22896777	22896798	GCTATTAATCGTGTACTCAGAG		58	22896655	22896730	GATGTTTGGCTTCATTGTG		57	NA	
Drosophila melanogaster	50	CG2201	FBgn0032955	FBtr0100510,FBtr0085921,FBtr0085922,FBtr0100511,FBtr0085923	3	5	5	85	2L	21615152	21615171	CTGTCTCATCTGTTCTGGAG		59	21615024	21615105	CGAGCAATACCATATTCCCA		59	NA	
Drosophila melanogaster	50	CG31673	FBgn0051673	FBtr0081422	1	1	1	102	2L	20830522	20830543	CCACTTACAAACGAAACTAGAG		59	20830605	20830682	GATTTACCAGACCTCCTCTG		59	NA	
Drosophila melanogaster	50	CG1962	FBgn0032876	FBtr0081399,FBtr0081400,FBtr0081401	1	3	3	60	2L	20680493	20680513	ATAGTGGTGCGGATTATAAGG		59	20680453	20680471	CTAGAGTTGGGATTGAGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arc-p34	FBgn0032859	FBtr0081358	1	1	1	80	2L	20420827	20420910	GAGACTTTATATGTGGAAGCCA		59	20420951	20420969	AATGACATCGTCTTCGTCC		59	NA	
Drosophila melanogaster	50	Ugt37a1	FBgn0026756	FBtr0081372	2	1	1	60	2L	20373712	20373730	GTCCTGAAGGACCAAAGAG		59	20373670	20373688	CCAAATCGAAGTGGTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	La	FBgn0011638	FBtr0081373	2	1	2	108	2L	20349027	20349045	TACATTGAGTTCGCCAAGG		59	20348866	20348955	CTTTGAACTTGAGCTTGCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG41073	FBgn0069950	FBtr0100266	3	1	1	113	2L	20231625	20231757	CTGGATTTAGCGTAGTCCA		58	20231452	20231471	TAGCATAATTCAGGCAACAG		57	NA	
Drosophila melanogaster	50	sNPF	FBgn0032840	FBtr0081327,FBtr0081326	1	2	2	92	2L	20055044	20055062	GAAGTCCGTAAACCAATGC		59	20055184	20055202	GATGGATGAGGTTTCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ddc	FBgn0000422	FBtr0081167	3	1	3	76	2L	19119324	19119342	GATAAGCTGGATCCCAAGG		59	19119189	19119207	AAGTCGACCATTGTCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Irk3	FBgn0032706	FBtr0114486,FBtr0081125	3	2	2	65	2L	18712026	18712045	CATCGAGTCCAAGATACGAG		59	18711710	18711728	TTTATAGTCTCACCCTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	PFE	FBgn0032661	FBtr0081029	2	1	1	80	2L	18062552	18063813	GCGGATATTAGATCTGTCCA		58	18063856	18063874	AATTCCAGTAGGTTGTCCT		57	NA	
Drosophila melanogaster	50	CG15145	FBgn0032649	FBtr0080991	3	1	1	104	2L	17531715	17531733	AGGATGAAACCACTCAGAC		58	17531557	17531575	TGAACAGTTCTAGGGTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13282	FBgn0032612	FBtr0080929	3	1	1	136	2L	16833456	16833475	CCGATATGTTTCTACATCCC		57	16833199	16833217	GTGCTTGGTGTTATGAACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CaBP1	FBgn0025678	FBtr0080837	3	1	1	66	2L	16355700	16355718	GATATTGTATCCTGGGCCA		58	16355652	16355670	TAATCTCGATGAGTTCGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tim17b2	FBgn0020371	FBtr0089700	2	1	2	83	2L	15486434	15486452	AGTTCCGACATATGTGAGC		59	15486497	15490712	TCCTCAACTATTAGCTTCGAC		59	NA	
Drosophila melanogaster	50	CG15263	FBgn0028853	FBtr0080729	1	1	1	60	2L	15285071	15285091	ATACTGCTTTACCGTAGTTCC		59	15285113	15285131	CATATTCTCCTCCGCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31829	FBgn0051829	FBtr0080750	2	1	1	60	2L	15269412	15269430	GAAATAGCACGGAAGTACC		57	15269370	15269388	TAACATTGAATGCCCTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16826	FBgn0032505	FBtr0080464	1	1	1	60	2L	13348201	13348222	CAATACCGTCGTAAATGATCTG		59	13348241	13348261	CTCGTCTATCCGATCATTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31730	FBgn0051730	FBtr0080480	3	1	1	60	2L	13259305	13259323	GGAGCTTCCTATGTTAACC		57	13259263	13259281	TGTACAATTGATAGGCAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15484	FBgn0032452	FBtr0080406	2	1	1	60	2L	12707425	12707446	CTATGAACTGAGGAAGAAAGAG		57	12707386	12707406	AAGCTCATAGGTATGAATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bun	FBgn0010460	FBtr0111003	1	1	6	87	2L	12477159	12498535	GATTTCATCGGTGCATCTG		58	12458199	12458217	TCATGAGATGCGACTTGAC		59	NA	
Drosophila melanogaster	50	CG31759	FBgn0051759	FBtr0080349,FBtr0080348	1	2	2	60	2L	12208526	12208545	TGCAGGTATTAGATACGGTC		58	12208567	12208586	TTTAGGGATGAAATCCACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14931	FBgn0032374	FBtr0080256	1	1	1	60	2L	11788906	11788924	GTGTCCAGAAGAAATCCCT		58	11788948	11788966	AAGTTATACGGATCGGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hgo	FBgn0040211	FBtr0080201	2	1	1	101	2L	11137693	11137776	ATGTAAAGGACTTCCAGGT		57	11137841	11137859	CATAGTTACCATGCCAAGC		58	NA	
Drosophila melanogaster	50	Grip75	FBgn0026431	FBtr0080033	1	1	1	80	2L	10483565	10483585	CAAGAAGTTGAGCAGTTTACC		59	10483625	10483703	GTAACCATGCAAACTATCTGG		59	NA	
Drosophila melanogaster	50	cdc2	FBgn0004106	FBtr0080051	2	1	1	98	2L	10385157	10385175	TGACTCGGAAATTGACCAG		59	10385020	10385038	TTCTTATAGTCGGGTAGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5096	FBgn0032235	FBtr0080006,FBtr0113034	2	2	2	130	2L	10383792	10383875	TTGGCGACAATGTATTTCC		58	10384031	10384050	GTCGGACAATATCAGTTCAG		58	NA	
Drosophila melanogaster	50	CG34043	FBgn0054043	FBtr0100098	1	1	1	89	2L	10280114	10280133	AGAATACAGAGATTGCGGAC		59	10279678	10280063	ATTCCTCCACTATTTCTGCG		59	NA	
Drosophila melanogaster	50	CG18619	FBgn0032202	FBtr0089735,FBtr0089736	2	2	4	90	2L	10264812	10264830	GGTATCAGTACCTGGAGGA		59	10264884	10264959	TCCATTGAATTAACGACGC		58	NA	
Drosophila melanogaster	50	eEF1delta	FBgn0032198	FBtr0079951,FBtr0079952	2	2	2	60	2L	10234095	10234114	CAAGTCGAACATCATTCTGG		58	10234135	10234155	CATAACCTTCAGATCGGTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4594	FBgn0032161	FBtr0079878	1	1	1	114	2L	9920742	9920760	TGCAGAATGTATGGATTGC		58	9920891	9920909	ATCACTCGATACTCACAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13097	FBgn0032051	FBtr0079697	1	1	1	73	2L	8512857	8512875	ACAATCACCAAGAATCGCA		59	8512696	8512714	TTTGAGGACTTCAGAGCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7429	FBgn0031979	FBtr0079540	2	1	1	180	2L	8041588	8041608	CTGTGAAGATCAACGTTACAG		58	8041810	8041828	AAGATCAGATCACGCTCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	pes	FBgn0031969	FBtr0079553,FBtr0114550,FBtr0079552	2	3	3	88	2L	7988318	7988403	CCGGGTATTACCTTGTATGAG		59	7988250	7988268	GCAATTTCCTCTGATACGC		58	NA	
Drosophila melanogaster	50	Snoo	FBgn0085450	FBtr0112719,FBtr0112721,FBtr0112718	2	3	5	109	2L	7975259	7975277	AATACCAGATCATCCTCGA		57	7896734	7896752	GTCATCCATGAGCATTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13793	FBgn0031935	FBtr0079508	3	1	1	88	2L	7718817	7718835	CTTAAACTCCTTTCGACCC		57	7718662	7718765	CTTCCTCAGTCCATTTAGC		57	NA	
Drosophila melanogaster	50	CG5177	FBgn0031908	FBtr0079441	3	1	1	153	2L	7405677	7405695	GAGGTTGAGTATCCTTCCG		59	7406039	7406057	TGTAGTGATAGGTCACGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gas41	FBgn0031873	FBtr0079364	1	1	1	60	2L	6949718	6949736	CTCTAGCACCACTATGGAC		58	6949676	6949696	CACTATTTCCTCATACGACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31635	FBgn0051635	FBtr0113410,FBtr0079326	1	2	2	115	2L	6639475	6639493	GAGTCAGAATCGGTAGCTG		59	6639317	6639399	TCTGTTGAGGGAGTAATATCAC		59	NA	
Drosophila melanogaster	50	Pez	FBgn0031799	FBtr0079284	1	1	1	80	2L	6333905	6333924	CAGCTAACCGAGGATATGAG		59	6333790	6333864	TTCCTGATACACTTGGAACTG		59	NA	
Drosophila melanogaster	50	CG9175	FBgn0031779	FBtr0079212,FBtr0079211	3	2	2	146	2L	6097430	6097448	ACTCCATGTTCGTAACTGG		59	6097245	6097320	GGATTGTACGTCTTTGGGA		59	NA	
Drosophila melanogaster	50	CG14010	FBgn0031725	FBtr0079116	1	1	1	134	2L	5604602	5604620	ATGTGGAGAACTTTGAGGC		59	5603162	5603915	GACTCAAATCGGCTTTCCT		59	NA	
Drosophila melanogaster	50	eIF-3p40	FBgn0022023	FBtr0079031,FBtr0079030	1	2	2	250	2L	5051655	5051673	TAACAAGTACCAGCAGGTG		59	5051357	5051375	TGATGAAGAGTTTGGCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31650	FBgn0031673	FBtr0079034,FBtr0079035,FBtr0079033	1	3	3	87	2L	5041718	5041736	ATTTATTGACCGGCATGAG		57	5041500	5041518	TTCTTCAAATCGATCAGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11927	FBgn0031638	FBtr0077386	3	1	1	60	2L	4848133	4848151	CCAGGACAGGAACTATCCT		59	4848175	4848193	GTTCATCAGCTGCATAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3225	FBgn0031631	FBtr0077416	3	1	1	129	2L	4815850	4815929	CCTTAATGATAGGTGTGAAACG		59	4815742	4815760	TGATGATGTTTCAGGGACG		59	NA	InUTR
Drosophila melanogaster	50	CG3921	FBgn0031571	FBtr0077496	3	1	1	80	2L	3800323	3800341	TCGTCACAATTATTGGAGC		57	3800383	3800466	AGTAGCATAGGATCATCTGAC		58	NA	
Drosophila melanogaster	50	CG34394	FBgn0085423	FBtr0112638,FBtr0112641,FBtr0112639	1	3	4	80	2L	3363352	3363370	GTGTTAATGCAGGCATTCC		59	3363179	3363309	TGTGATCATCGACAGTTCTG		59	NA	
Drosophila melanogaster	50	CG31689	FBgn0031449	FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706	3	4	4	83	2L	2738710	2738728	AGGAGACCTTCAACAACTG		59	2738773	2738878	AGAAGATGATATGGACTGGTG		58	NA	
Drosophila melanogaster	50	CG7082	FBgn0031401	FBtr0077836,FBtr0077838,FBtr0077837	1	3	4	97	2L	2223617	2223708	GCCAAGATAAGATTACGAGAC		58	2223767	2223785	TTGATAAGCAGAGCTCGAG		59	NA	
Drosophila melanogaster	50	mio	FBgn0031399	FBtr0077835	3	1	1	81	2L	2219095	2219169	TATGCTACAGGAGTGAGCA		59	2219213	2219232	TCTATAAAGCGATCCAGCTC		59	NA	
Drosophila melanogaster	50	lea	FBgn0002543	FBtr0077941	1	1	1	80	2L	1387518	1390902	CTTGAAGATGTTCCCTCTG		57	1387456	1387474	CTTCCATTTGAGGAAGACC		57	NA	
Drosophila melanogaster	50	drongo	FBgn0020304	FBtr0078035,FBtr0078036,FBtr0078037	1	3	3	111	2L	836547	836565	TCCCATCTACAATGCAGTG		59	835456	835474	CTTAAGAGCGGCATATCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	1	7	8	80	2L	119224	119297	TATAATGCAGACTGATGTCCTG		59	119165	119184	TTTCCCAACTTCAAGTTTGC		59	NA	InUTR
Drosophila melanogaster	50	l(2)gl	FBgn0002121	FBtr0078166,FBtr0078171,FBtr0078170,FBtr0078167,FBtr0078168,FBtr0078169	1	6	6	80	2L	14976	14996	ATTATGTGCCTTATGGACCTG		59	14858	14937	CAATTACATCGTTGGATCTTCG		59	NA	
Drosophila melanogaster	50	CR34311	FBgn0085340	FBtr0112509	1	1	1	66	X	20254717	20254794	GAATACTGAACTCAAAGAAGCG		59	20254672	20254690	GGTATCGCAGTTAGATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR33963	FBgn0053963	FBtr0100004	3	1	1	60	X	12553622	12553641	GTTTCTCGTGTATCTTGTGG		58	12553664	12553682	AGGGAATGTAAGTTGACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41480	FBgn0084040	FBtr0111184	3	1	1	94	X	22208785	22208803	CGGTCAATTGATGTCTGGA		59	22206727	22208728	TTAAAGGATCATCCATGGCA		59	NA	
Drosophila melanogaster	50	CG1529	FBgn0031144	FBtr0114624,FBtr0077267	2	2	2	112	X	20901394	20901412	CTAGAGCAGGAAGATGCAC		59	20901300	20901320	GGGATAGGTTTGTAGTCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1532	FBgn0031143	FBtr0077268	1	1	1	86	X	20898977	20899222	AATCTTGGGAATGACGGTG		59	20898851	20898869	CTCCACCGATTGTCATAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7332	FBgn0030973	FBtr0074647	1	1	1	98	X	18780687	18780705	TGGAGGAAATGCGTTACTG		59	18780766	18780877	TGAACAGAACGGTTAAATGC		59	NA	
Drosophila melanogaster	50	bnb	FBgn0001090	FBtr0074659,FBtr0074656,FBtr0074658,FBtr0074657	1	4	4	62	X	18689036	18689054	GATGAGTCCTCAGAGTCCA		59	18688992	18689012	CTATTCCTAGTTCTCCTTCGA		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7135	FBgn0030895	FBtr0074515	1	1	1	95	X	17998531	17998549	CATAACGTGCTCAATCACG		59	17998605	17998785	GAAGTCAATAATCTTCACCTGC		59	NA	
Drosophila melanogaster	50	dik	FBgn0030891	FBtr0074510	3	1	1	65	X	17980256	17980274	ACAGATGCTCTCCAATGTG		59	17980302	17980321	TTGTCGAGGCTATCATACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8557	FBgn0030842	FBtr0074434,FBtr0074435	2	2	2	137	X	17357736	17357754	CTGATTGTACCCATGTTGC		58	17356148	17357638	CTTGTAATCATTGACTAGTCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9125	FBgn0030793	FBtr0074352	1	1	1	60	X	16696487	16696593	CAGTTGACTTCAAAGATTGC		57	16696446	16696464	CTGGTCTTTAGCTCTACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mei-41	FBgn0004367	FBtr0074271	2	1	1	132	X	16293291	16293309	GACCCTGATGTCCATTCTG		59	16293405	16293487	CTGTCGTTTAACGTGTCCT		59	NA	
Drosophila melanogaster	50	sl	FBgn0003416	FBtr0074230	1	1	1	112	X	16246748	16246831	ATGGGAAACTTGAAGGTGG		59	16246907	16246925	ATAGTCTCCCACAAACGTG		59	NA	
Drosophila melanogaster	50	CG15916	FBgn0030704	FBtr0074117	2	1	1	60	X	15785441	15785460	TTATGGACAAGATTCTCGGC		59	15785482	15785501	TGTCTATGATTAACCCAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15914	FBgn0030700	FBtr0074105	3	1	1	84	X	15747910	15747981	GATACTCTCCTGTCTTGCC		59	15748028	15748047	AAAGGGCTGAACATTATCCA		59	NA	
Drosophila melanogaster	50	acj6	FBgn0000028	FBtr0074016,FBtr0100326	1	2	4	93	X	15272252	15272270	CTCCTATCGAAGTTCGGAG		58	15265710	15271601	GAAGATATCACCCTCGAGAG		58	NA	
Drosophila melanogaster	50	CG5548	FBgn0030605	FBtr0073960	3	1	1	108	X	14958435	14958455	AGACTTAGGCTAGATAACCCT		59	14958525	14958543	AAACTAGCTTGCAACATGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG32613	FBgn0052613	FBtr0073887	1	1	1	60	X	13845391	13845409	CTTCGCTATGGCTTAGACC		59	13845349	13845369	GACTGAATGACTGACAAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4407	FBgn0030431	FBtr0073696,FBtr0073695	1	2	2	220	X	12796462	12796480	CAGTTGGTTCAGTACGAGG		59	12795796	12795814	TTCAAGTGGATGTAGTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4661	FBgn0030429	FBtr0073699	3	1	1	60	X	12750346	12750364	AGATGAACGTGAAATCGGT		59	12750304	12750322	CACATTGGCATGAATTACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32656	FBgn0052656	FBtr0089803	1	1	1	60	X	11958110	11958128	CCCTGGATCATCTGTTCTG		59	11958151	11958170	AGGAATCGATGGTACAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10347	FBgn0030342	FBtr0073602	2	1	2	190	X	11747589	11747608	GAATTGTCACTAACCAAGGC		59	11747359	11747436	GTCAAATTGAAGCGTACCA		58	NA	
Drosophila melanogaster	50	CG2247	FBgn0030320	FBtr0073536	2	1	1	80	X	11501984	11502060	TCATGACGATGAAGGATCG		59	11501922	11501942	GCCATACACTCTTATCCTGAC		59	NA	
Drosophila melanogaster	50	CG11752	FBgn0030292	FBtr0073452	3	1	1	93	X	11244371	11244389	ATACTACAGCTTCAATCGC		57	11244446	11244464	CTACATCTACTTGAGGGCC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	sisA	FBgn0003411	FBtr0073461	1	1	1	215	X	11216298	11216316	GGAGTCATCTTTACTTGCC		57	11216101	11216119	GATTCTCCAGGAGCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34339	FBgn0085368	FBtr0112541,FBtr0112542	2	2	2	131	X	9319485	9366040	GATCACCAGGTAAATACACTC		57	9319374	9319392	TCCCTACATTCCCTTACTC		57	NA	InUTR
Drosophila melanogaster	50	CG15324	FBgn0029966	FBtr0071087	2	1	1	60	X	7769355	7769375	ACACTTACTATCCCTATGGAC		58	7769396	7769415	GCAGTATAGTAGACAGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32736	FBgn0052736	FBtr0071008	1	1	2	98	X	6905778	6905857	AGACCAATTTCTACCGCAC		59	6905918	6905937	CTTAGTTGGTGTTATTCGCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG15767	FBgn0029809	FBtr0070813	2	1	1	60	X	5684249	5684267	ATGCCCGATGAATACTTCG		59	5684291	5684309	CAAAGTGCAGAACAATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2713	FBgn0024978	FBtr0070497	1	1	1	178	X	2625007	2625025	ATCATGTGAAGAACCTGGA		58	2624729	2624807	CTGCGCAATTATCTTTAGGA		58	NA	
Drosophila melanogaster	50	CG2658	FBgn0024992	FBtr0070503,FBtr0070502	1	2	2	130	X	2590887	2590964	CAGCATGGATTCATTTAACC		57	2590776	2590794	CAAATTCCTTCACCTCCTG		58	NA	
Drosophila melanogaster	50	pcx	FBgn0003048	FBtr0070395	1	1	1	80	X	2129478	2129496	GAGTAGGTGGCGTTATCAG		59	2129540	2129621	AGTCGTAAATCCCAGTGTC		58	NA	
Drosophila melanogaster	50	Gr2a	FBgn0027796	FBtr0114515	1	1	1	97	X	1347990	1348057	CTCTATACGATCGTGGGAG		58	1348118	1348136	TACTGTCCGTTGGAATCAC		59	NA	
Drosophila melanogaster	50	fs(1)N	FBgn0004650	FBtr0070207	3	1	1	87	X	1219207	1219284	GAAGAATTGGAGCTCAATGG		58	1219334	1219352	TGATAACACGTGACTCCAG		59	NA	
Drosophila melanogaster	50	Cyp4g1	FBgn0010019	FBtr0070099	3	1	1	60	X	363171	363190	CAGTCCTATGTTAACCACCT		58	363130	363148	CCAATACTCGTACAATGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR41539	FBgn0085796	FBtr0114250	1	1	1	60	U	9757594	9757613	TGAAGATTGAGATAGTCGGG		58	9757636	9757654	CAGAACGAGCACATAAACC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40867	FBgn0085529	FBtr0113942	2	1	1	200	U	9327269	9327287	AATCCCATTGGATACTGGC		59	9327087	9327105	TTTGCCTTGTATCACAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41584	FBgn0085709	FBtr0114158	1	1	1	60	U	7412861	7412879	GTTGATGTTGACCAGTGGA		59	7412902	7412921	GGTTCCACTGAACTGTACTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17626	FBgn0040032	FBtr0113754	2	1	2	61	U	252371	252390	TAACATTATTCGCAACAGCC		58	252411	252432	GTGCATCATACTTGTATACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40092	FBgn0058092	FBtr0113790	3	1	1	76	U	235264	235282	GCAAATCTGCTCTATCTCG		58	235206	235224	AATTTGTTTCGCGGTTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-3186	FBgn0086662	FBtr0091697	2	1	1	62	3R	1423823	1423842	AACACTTGTTCAACTTGCAG		59	1423780	1423800	CAAGAGTCAGTATACCAAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pncr017:3R	FBgn0046756	FBtr0091956	2	1	1	62	3R	27594812	27594830	CAGTCGAGAGGTCTTAACC		59	27594853	27594874	CTTCTCTGATATCTTCATTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ttk	FBgn0003870	FBtr0085828,FBtr0085826,FBtr0085827,FBtr0085825,FBtr0085830,FBtr0085829	2	6	6	127	3R	27553858	27553876	ACATGATGAACGACTCCTC		59	27553964	27554122	GCGACTTTCATTTAGATCATCC		59	NA	
Drosophila melanogaster	50	CG12071	FBgn0039808	FBtr0085716,FBtr0085717	1	2	2	160	3R	26705207	26705225	AACTGACCTACAACATCCC		58	26704954	26705083	CTTGTTGGTGGACTTTGAG		58	NA	
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634	3	4	5	103	3R	26212311	26213196	AGATTTCAAGTGCTCCCTG		59	26212226	26212244	TGATCTCCTCCTGGATCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG15526	FBgn0039744	FBtr0085562	3	1	1	118	3R	25881888	25881987	CTTAAACTTCGGGATCCGA		59	25882069	25882087	AACTTCACGATCTCCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15522	FBgn0039723	FBtr0085503	3	1	1	242	3R	25753836	25753914	GATAACAGGATACTTGCTCG		57	25754118	25754137	TTGAAGATCTCCGTGTTCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14509	FBgn0039647	FBtr0113303,FBtr0113304	2	2	2	148	3R	25004533	25006890	CCAGAGTTCGATTATGCCA		59	25004403	25004421	TCATAGTGATTGGTGACGG		59	NA	
Drosophila melanogaster	50	Pkc98E	FBgn0003093	FBtr0085359	1	1	1	95	3R	24867135	24867327	GAGAGTCACTTCGATCGAG		59	24867386	24867404	GATGTTGCTCACATTGGTC		59	NA	
Drosophila melanogaster	50	CG5521	FBgn0039466	FBtr0085069	2	1	1	94	3R	22796538	22796617	GGTGTCAGATACTTCTTACTG		57	22796672	22796691	ATAAGACCAGGGATAAGGTC		57	NA	
Drosophila melanogaster	50	Nf1	FBgn0015269	FBtr0100113,FBtr0084953,FBtr0084952	3	3	3	83	3R	21814618	21814636	AACATATTCTACCAGGCCG		59	21814681	21814754	CGTTTCTCCAATCTTGTATCG		59	NA	
Drosophila melanogaster	50	CG14546	FBgn0039395	FBtr0084984	3	1	1	60	3R	21747042	21747062	GATAATATTGTCTGCCTTCCG		58	21747002	21747020	GAATTGGACAATTGCGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31436	FBgn0051436	FBtr0084830	2	1	1	93	3R	21130984	21131004	GATGTTCTAAAGAAGATCGGC		58	21131056	21131138	GAAAGAACTCGTAGTACTTGTG		58	NA	
Drosophila melanogaster	50	CG31111	FBgn0051111	FBtr0084790	1	1	1	60	3R	20881796	20881815	ATTTAAAGTATAAGCGGCGC		59	20881605	20881775	TCCAGTAGATAACTCTTGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13634	FBgn0039224	FBtr0084742	2	1	1	60	3R	20614930	20614948	GTGCAAATTCAGCACTGAG		59	20614888	20614908	AGTAAGATCCGGAAAGATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6695	FBgn0039215	FBtr0089916	3	1	2	129	3R	20483306	20483324	AATATAGTTCCGCTACCGA		57	20484127	20484233	TTATCGGCTTTATATTGCCG		58	NA	
Drosophila melanogaster	50	Apc2	FBgn0026598	FBtr0084552	3	1	1	100	3R	19992793	19993009	TAATCTTCTAAGTCAGGCCA		57	19993072	19993090	ATAGAGTGCTGGTACTAGC		57	NA	
Drosophila melanogaster	50	PSR	FBgn0038948	FBtr0084239	1	1	1	63	3R	18187712	18187730	CAAGAAGTATCGCAACCAG		58	18187667	18187685	CATCTTGACGCTATAGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slou	FBgn0002941	FBtr0084123	1	1	1	153	3R	17380374	17380393	AGAGAACATACTGGATCCGA		59	17375448	17380258	ATTCAAATCCTGGGCAGAC		59	NA	
Drosophila melanogaster	50	Mvl	FBgn0011672	FBtr0089521,FBtr0089522,FBtr0089523	2	3	3	81	3R	16882559	16883305	GCTATGAGTACATTGTATCAGC		58	16882499	16882517	GAATTGCAGTTAGAGCACC		58	NA	
Drosophila melanogaster	50	CG4390	FBgn0038771	FBtr0083836,FBtr0083837	2	2	2	60	3R	15882337	15882356	CAATGATCACATCCAGACCA		59	15882296	15882315	GTAGAAGTAGCTGTGATCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	P5cr	FBgn0015781	FBtr0083713	1	1	1	76	3R	14855602	14855620	GATGAAGTCTGTTCTCCCG		59	14855660	14855739	AAAGTAGACCTGAGGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14302	FBgn0038647	FBtr0083673	3	1	1	205	3R	14558429	14558521	TGAAATTCTTCAACCTGCTG		58	14558689	14558707	AATGGGATAGATGGTCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Atg8b	FBgn0038539	FBtr0083533	2	1	1	84	3R	13550370	13550388	TAAACAATGTGATCCCACC		57	13550304	13550324	GAAATGTAGAGGAAGTAGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31269	FBgn0051269	FBtr0113401	2	1	1	60	3R	12953382	12953401	TATACCTTCAGTACGTTCCC		58	12953423	12953442	CAATCTTCATCGTTGCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31275	FBgn0063261	FBtr0083346,FBtr0083345	2	2	2	60	3R	12576907	12576926	ACTATTGGGTATGTGGTGTC		59	12576866	12576884	TATCGAAGGATGTTTCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Scp2	FBgn0020907	FBtr0083361	1	1	1	131	3R	12403086	12404721	GTGTTCTTTGATGTGAACCA		58	12402696	12402714	CATCATCAGGTCGTAGGTC		59	NA	
Drosophila melanogaster	50	CG14888	FBgn0038442	FBtr0083298	1	1	1	85	3R	12378113	12378131	CTAACCACAACCATCAAGG		58	12378180	12378276	ATCTGTGTATCAGGTGGTC		58	NA	
Drosophila melanogaster	50	GATAe	FBgn0038391	FBtr0083218	2	1	1	103	3R	11844306	11844385	GATAGTTCAGCCAGTACCC		59	11844452	11844470	TATTCGATGATCGCTCTGG		59	NA	
Drosophila melanogaster	50	Arpc3A	FBgn0038369	FBtr0083182	2	1	2	82	3R	11660874	11660895	GCTACTTGCTACTTGAATTCAC		59	11660937	11660956	TAGAGCGTCACATAGATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12207	FBgn0038220	FBtr0082922,FBtr0082921,FBtr0082923	1	3	3	152	3R	10126681	10126702	CCTTAACAAGATAGACAACACC		58	10127024	10127042	TTGTAGGAGTTGTTCAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17327	FBgn0038107	FBtr0082721,FBtr0082720	1	2	2	62	3R	8823316	8823334	TATATCCGTGTCCCTTCGA		59	8823272	8823290	CGTTCGTTTCGAAATTACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33098	FBgn0053098	FBtr0082580,FBtr0082579	1	2	3	122	3R	8213638	8213708	AGCTGAAGGAAGTCTTCTC		58	8213794	8213812	TCATCTGTTCCAGTAGCTG		58	NA	
Drosophila melanogaster	50	CG14739	FBgn0037987	FBtr0082553	1	1	1	60	3R	7874395	7874414	GCATGAATGTCCTTAAGCAG		59	7874354	7874374	GTTTCGAATATGTTGACCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18476	FBgn0037931	FBtr0082443	2	1	1	96	3R	7501594	7501612	CGAAATGATCCAGCATCAG		58	7501445	7501535	CATAATGCTCTTGGAGACAC		58	NA	
Drosophila melanogaster	50	Ugt35b	FBgn0026314	FBtr0082375	3	1	1	62	3R	6995716	6995737	TTCAGAGATGTGTTTATCCCAG		59	6995603	6995696	GCTCAGTTCGTTTATCAATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8481	FBgn0037747	FBtr0100583,FBtr0082134	3	2	2	76	3R	5595003	5595022	TATATCTGTCCACCATCGAC		58	5595061	5595079	ATACATTGTAATGGGAGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8312	FBgn0037720	FBtr0082075	1	1	2	97	3R	5417889	5417907	CCGCAACAATTAACACCAG		59	5433694	5447257	AGCATGTTACGGAAGATCTG		59	NA	InUTR
Drosophila melanogaster	50	CG33191	FBgn0053191	FBtr0081941	3	1	1	60	3R	4604716	4604735	CAATTGAAGAACCGTTGGTG		59	4604675	4604696	TAGATTATCAAGTGCTCCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9793	FBgn0037620	FBtr0081948	2	1	1	185	3R	4554798	4554817	AGCAGGAACTCAAATCAGAC		59	4554580	4554650	GATCCTCACAGAATTCGCA		59	NA	
Drosophila melanogaster	50	CG11698	FBgn0037572	FBtr0081833	3	1	1	61	3R	4137972	4137990	GATGCAAGATTCCCAATGC		59	4138015	4138033	AGGATGTTCGAAAGAAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33722	FBgn0064126	FBtr0091719	3	1	2	185	3R	4069896	4069919	CATACAGATACGTATCCTTGTAGG		59	4070063	4070081	GTTGTGAAACTTGAGGCAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14598	FBgn0037503	FBtr0081534	2	1	1	61	3R	3265583	3266588	CTTACTCATTGCTTGTGCA		58	3266610	3266631	CCTTTATTTCTGACACATCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1965	FBgn0037466	FBtr0081634	2	1	1	119	3R	2896830	2896849	CCTACAGTCTGGTTGTTACC		59	2896929	2897004	GCTGGATTGCATAAAGATTGG		59	NA	
Drosophila melanogaster	50	CG9727	FBgn0037445	FBtr0081730	2	1	1	103	3R	2280093	2280112	CTAAGCTCCCGTATCAAGAG		59	2279954	2280027	TTCAAAGGTCCAATGTCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG2091	FBgn0037372	FBtr0078678	2	1	1	277	3R	1580334	1580354	GACTTATCCAAGTTCCAACTG		58	1579955	1580034	TTCACACTGCACAAATCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rab23	FBgn0037364	FBtr0078727	3	1	1	141	3R	1508451	1508469	GCTTAGATGCGTCTAATCC		57	1507624	1508346	CATTTCCAACAATGACCAC		57	NA	InUTR
Drosophila melanogaster	50	PEK	FBgn0037327	FBtr0078770	1	1	1	95	3R	1286479	1286582	GATACTTCCATTCCTGGACC		59	1286403	1286421	TCTGGATAGAGGTGGACAG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-1837c	FBgn0082994	FBtr0113607	3	1	1	74	3L	5757107	5757125	CAGAGATCAACAGTGTCGA		59	5757051	5757070	TGGACAACTTTAAAGACCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34410	FBgn0085439	FBtr0112678,FBtr0112677	1	2	2	200	3L	21326357	21326460	TTTAATAGGCAACAAGGCC		57	21327025	21327043	TTGAACTTTCCATCATCGC		58	NA	Nonspecific
Drosophila melanogaster	50	Gyc76C	FBgn0013974	FBtr0100157,FBtr0100156,FBtr0100155	1	3	3	80	3L	19718583	19750645	AGATACACAGGTCGTTAAGTC		59	19718523	19718541	ACATCCTCGTACAGAATGG		58	NA	
Drosophila melanogaster	50	BG642378	FBgn0052203	FBtr0110771	3	1	1	91	3L	19121729	19121814	ATGACTATAGATGTGGGCG		58	19121656	19121674	TAAATGGTGCTCTTGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7580	FBgn0036728	FBtr0075222	1	1	1	192	3L	17468527	17468545	TATCCTCGATCCTGAATGG		57	17468757	17468775	TAGATCAGGTATCCCACGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	a10	FBgn0011293	FBtr0075290	1	1	1	60	3L	17016650	17016668	GATAAGTTCGACAACGTCG		58	17016608	17016626	AGTTGATCAACAGTCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33061	FBgn0053061	FBtr0113448	3	1	1	193	3L	16323434	16323452	TACGATTAGCCAGGTTCAG		58	16323609	16323687	AAGTGTTGCTCAACTTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32150	FBgn0052150	FBtr0075534,FBtr0075535	2	2	2	60	3L	15831585	15831603	CCAGACCAACTGTATAGGG		58	15831543	15831563	CGGCCAGTTTATAAAGTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32135	FBgn0052135	FBtr0075760	3	1	1	60	3L	13961105	13961125	AGATATCATCGGATACTCTGG		58	13961145	13961165	GAAGTCTGCAATACGAATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33263	FBgn0053263	FBtr0075859	2	1	1	60	3L	13417110	13417131	CATCTATTGCAATGGAGAAGAC		59	13417071	13417089	GTCAAAGTAGGTGGACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14107	FBgn0036351	FBtr0075866	2	1	1	60	3L	13373761	13373782	GAAGAGGAAACTCCATCTACAG		59	13373722	13373742	TCTTGTTATCCTCGATTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32110	FBgn0052110	FBtr0075931	2	1	1	60	3L	12802814	12802833	TACTACAATTCAAGAGGCCG		59	12802854	12802874	GAAGGTACTTCACTAGTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33500	FBgn0053500	FBtr0076094	1	1	1	68	3L	11501796	11501814	TAGTACCACAACAACCACG		59	11501846	11501864	GTTGTTGTGGTTGATGCTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3529	FBgn0035995	FBtr0076461	2	1	1	107	3L	9442915	9443129	GGTAAGTAAATCGACGAAAGAG		58	9443360	9443378	AATTTGTCAAACTCCGAGC		58	NA	
Drosophila melanogaster	50	CG34455	FBgn0085484	FBtr0112761	3	1	1	98	3L	9354002	9354020	CAAGACCTTTAAGGGTCCC		59	9354147	9354166	AAGAGGTGTGAGTACAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6673	FBgn0035906	FBtr0076653	1	1	2	60	3L	8515813	8515831	TGACTACATGATTTGGCCC		59	8515771	8515791	TTCATCCAGAGTGTACTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7182	FBgn0035878	FBtr0076677	2	1	1	60	3L	8338726	8338744	CCATCAATATCACACGGAC		57	8338684	8338702	GTAGCTGGGTATGGATAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bin	FBgn0045759	FBtr0076900	3	1	1	194	3L	6986052	6986142	GGACAATGGCAACTATTACG		58	6986296	6986317	CAGGATATGTTCGTATACTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10625	FBgn0035612	FBtr0077140,FBtr0077139,FBtr0077137,FBtr0077138	2	4	7	110	3L	5534359	5534445	GACGCTATAACGGTATTAACG		58	5534269	5534287	CAACAACGTGGACATATGG		58	NA	
Drosophila melanogaster	50	CG4780	FBgn0035602	FBtr0077145	2	1	1	64	3L	5359927	5359945	CTGTTGTATAAGGTGCCAC		58	5359973	5359991	TATTTCAGCTGATCCACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32248	FBgn0052248	FBtr0073304	3	1	1	83	3L	4471710	4471839	GCCGGTCTAAGATATTATTCGA		59	4471883	4471901	GTAGTTGTAGCCAGATTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr64Ab	FBgn0035511	FBtr0073253	2	1	1	196	3L	4211335	4211462	TCAAGATCACCCTCATCTG		58	4211157	4211175	CTTGACCACATCTCCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18675	FBgn0040696	FBtr0073218	2	1	1	263	3L	4174526	4174544	AATACCGAGGATCTGACTG		58	4174831	4192200	CTCAAGTTTCTTGAGTTCCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14963	FBgn0035409	FBtr0073111	1	1	1	60	3L	3172134	3172154	AGTCTATTGAACCAGTTTCCC		59	3172094	3172112	TTAGAAATCCTTGCCAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr62Bc	FBgn0035281	FBtr0072869	1	1	1	120	3L	1841181	1841772	ATCGATTACCATGCCTACC		58	1841079	1841097	GAGAGTAGGATCCCTTGAC		58	NA	
Drosophila melanogaster	50	CG18173	FBgn0035265	FBtr0072796	2	1	1	60	3L	1736625	1736645	TGCCTACGAAATTGGTATCTC		59	1736585	1736604	CAGCATCCATATGACATAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13920	FBgn0025712	FBtr0072761	1	1	1	87	3L	1650774	1650792	ATACCCTCGAAATGGTACC		58	1650840	1650921	TGACCTTATGATAGGGAATCAG		58	NA	
Drosophila melanogaster	50	Bgb	FBgn0013753	FBtr0072758	2	1	1	62	3L	1640022	1640040	ATGATACCCTACGACACCA		59	1640066	1640084	CATCTTGAAGATGAAGCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34057	FBgn0054057	FBtr0100835	1	1	2	255	3L	897725	897743	CATACTCTGCCTAGTGCTC		59	897962	898035	ATAAGTGTCATCATCGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mri	FBgn0035107	FBtr0072481,FBtr0072480	2	2	3	130	3L	201354	201444	AGGAGTATTGTCAGACCGT		59	201538	201556	GTATCCCTCTATGCCACAG		58	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-2949	FBgn0082981	FBtr0113494	2	1	1	90	2R	4982895	4982913	GCAAATCGAGTTCTACTGG		58	4982967	4982985	AATTGCAATCGGTGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pncr016:2R	FBgn0062961	FBtr0091953	1	1	1	69	2R	14598932	14598952	GCTATTACTCTTTGTTTCCGC		59	14598983	14599059	CGTTAAGCAATCAGCAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16936	FBgn0027590	FBtr0072436	3	1	1	280	2R	20654930	20655005	GAACTACGGCCAATTAACC		58	20654668	20654687	CCATAATACAGGATGGGCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Start1	FBgn0035028	FBtr0089867,FBtr0089868	2	2	2	80	2R	20462815	20462896	GCATTGTGATCAATGGAGAC		59	20462937	20462957	CAAAGAGCGATTTGTAGATGG		59	NA	
Drosophila melanogaster	50	prom	FBgn0050164	FBtr0072360	2	1	1	84	2R	20308342	20308871	GCGGAACTATACATTGGAG		57	20308276	20308294	TCCATTTACCGTAGAGGTC		58	NA	
Drosophila melanogaster	50	CG3394	FBgn0034999	FBtr0072268,FBtr0072269	2	2	2	247	2R	20184731	20184749	GACGTCTTCTTTAACTCGG		57	20185258	20185276	TAATCCATGTCCACCTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpL12	FBgn0034968	FBtr0072174,FBtr0072176,FBtr0072175	3	3	3	186	2R	19948506	19948680	GCAGAAGAACATCAAGCAC		59	19948827	19948848	GTTCAGTTCGTCAATAACATCG		59	NA	
Drosophila melanogaster	50	PebIII	FBgn0011695	FBtr0072164	1	1	1	62	2R	19914606	19914624	CAAGTACGACAACATCGAC		58	19914650	19914668	AAGTAGTTTCCGAAGAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3105	FBgn0034950	FBtr0072160	1	1	1	81	2R	19879127	19879205	CGTTAATGAAGCCAAGCAC		59	19879250	19879268	CTCGTGGTTACTCACTGAG		59	NA	
Drosophila melanogaster	50	CG4091	FBgn0034894	FBtr0072097	3	1	3	299	2R	19588108	19588336	TGGAACTTGGAAGTCATGG		59	19587827	19587846	CTTTCTCTTAAAGAGCTCCG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG9890	FBgn0034814	FBtr0071984	1	1	1	60	2R	18951579	18951597	CTGGCGCATTTGTATATGG		59	18951537	18951555	GAAGCGCTATATCCTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34209	FBgn0085238	FBtr0112402	1	1	1	215	2R	18928886	18929134	ATGAATGGACTTGGATCCG		59	18924319	18924337	TGGGATTGTACGATGTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13532	FBgn0034788	FBtr0071899	3	1	1	109	2R	18760890	18760986	TGTCTGTCATGTTTGACAC		57	18761059	18761077	TTGATCTCTAGGAATGCGG		58	NA	
Drosophila melanogaster	50	CG12490	FBgn0034782	FBtr0071892	3	1	1	94	2R	18723774	18723873	CATGAAGACGATAACCGTG		58	18723929	18723949	GTTCCAAAGTATAGGTACACC		57	NA	
Drosophila melanogaster	50	CG34029	FBgn0054029	FBtr0100084	3	1	1	62	2R	17858383	17858401	GGATCTTCGATCACAGAGC		59	17858339	17858357	AAAGTCATCCACGATTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr57a	FBgn0041240	FBtr0086241	2	1	1	89	2R	16573352	16573370	TCGAATCCCTAATGTCGTG		59	16573226	16573299	ACAAACCGATAACTTTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11099	FBgn0034485	FBtr0086315	3	1	1	242	2R	16124464	16124540	CTACCAGTGGAGCTAAGTG		59	16124825	16124843	ATGGTTCATGAACTTGGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG18607	FBgn0034429	FBtr0086514	1	1	1	60	2R	15177147	15177166	TTCTGCACTAGCTTCTACTC		58	15177189	15177207	AATAGATGCACTCCATGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cora	FBgn0010434	FBtr0086508,FBtr0086506,FBtr0086507,FBtr0086509	1	4	4	88	2R	15123848	15123866	CATCCCGCTAAGGATTCTG		59	15123918	15124001	TTGATGCGCAATTTATCGC		59	NA	
Drosophila melanogaster	50	botv	FBgn0027535	FBtr0086579	2	1	1	93	2R	15017988	15018066	TTAGAATCAAGAGCACCGT		58	15018123	15018141	ATCTTCTGGTTGTACTGGC		59	NA	
Drosophila melanogaster	50	CG15105	FBgn0034412	FBtr0086572,FBtr0114622,FBtr0086573	3	3	3	114	2R	14882548	14882566	GATACCCTACAATGGCGTC		59	14882642	14884407	CATAATTTGACCTGATGTGGG		59	NA	
Drosophila melanogaster	50	CG15073	FBgn0034379	FBtr0086607	1	1	1	80	2R	14594730	14594749	TATCTGTTGGATCAGCATCG		59	14594792	14594870	TTGGTTGGGAAATCTCCTC		59	NA	
Drosophila melanogaster	50	CG5493	FBgn0034364	FBtr0086713	2	1	1	128	2R	14504805	14504823	CAATAGATCTGCCAGGGAC		59	14504618	14504716	CCCAGATTGTCATTTATGTAGG		58	NA	
Drosophila melanogaster	50	CG5033	FBgn0028744	FBtr0089551,FBtr0089550	3	2	2	82	2R	13679634	13679717	CATGGTCTATAATGACCTGCT		59	13679761	13679779	CAAACTCATCGCGTTTCTC		59	NA	
Drosophila melanogaster	50	CG4802	FBgn0034215	FBtr0086916	3	1	1	192	2R	13316435	13316513	TACTAAATGCCAAGCAATGC		59	13316665	13316686	GGATCTAATTCGTACGTAATGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Pkc53E	FBgn0003091	FBtr0087049,FBtr0112819,FBtr0087048	3	3	3	80	2R	12829598	12829617	ACATAGTGGGTGATAAGACC		58	12829657	12829746	AGGGCTGATACAGTATTATCTC		58	NA	
Drosophila melanogaster	50	CG15709	FBgn0034100	FBtr0087186	2	1	1	71	2R	12141762	12141942	CAGGAAGCTGATACAGTGG		59	12141709	12141727	CAAATTACGCATACGCCAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	ATPCL	FBgn0020236	FBtr0087266,FBtr0087265	2	2	2	84	2R	11881891	11881974	TTTACCAGTGAGGAAGCAC		59	11881825	11881844	CAATAAATCCTATGCTGCGG		59	NA	
Drosophila melanogaster	50	CG8152	FBgn0034008	FBtr0087392	3	1	1	60	2R	11198336	11198354	CCTAACCTTCCAAGTACCC		58	11198294	11198312	CTAGGATCCTTTCTGGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12859	FBgn0033961	FBtr0087440	3	1	1	128	2R	10644342	10644360	ACTACGAACACTTCAAGCC		59	10644452	10644470	CAGTCCTGTACTTCTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17724	FBgn0033802	FBtr0087771	2	1	1	169	2R	9072421	9072441	ACGGATGGAAATGTCTATCAG		59	9067606	9072290	TATATCGTAGCGGCAACAC		59	NA	InUTR
Drosophila melanogaster	50	sug	FBgn0033782	FBtr0087789	3	1	1	170	2R	8816678	8816696	GATACGGATATCGTCAGCG		59	8816830	8817290	CTCTATCGCAATCTGTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bic	FBgn0000181	FBtr0087783,FBtr0087782	1	2	2	141	2R	8757979	8757997	GAAGAAGATCGTCCACTCC		59	8758102	8758120	ATTGTTGAAGTGGATGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13151	FBgn0033750	FBtr0087939	3	1	1	60	2R	8403889	8403907	TGATCTGCGATTTCAAGAC		57	8403929	8403949	AAGTTTAGATACCGTGATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8850	FBgn0033708	FBtr0087973,FBtr0087972	2	2	2	116	2R	8186727	8186747	GTCTACTATATGGCTGGATGG		59	8186569	8186649	CAGTCCGAATTTACTGCCA		59	NA	
Drosophila melanogaster	50	CG13188	FBgn0033668	FBtr0088039,FBtr0088040	1	2	2	81	2R	7837687	7843102	TATACAAGGAGCACATTCAGG		59	7843145	7843163	TCGAAGACGATCACTTTGG		59	NA	
Drosophila melanogaster	50	CG13203	FBgn0033628	FBtr0088130	3	1	2	164	2R	7263313	7263331	AGGATAACAGTTCAGTGGC		59	7263780	7263799	GTATCATGTGCGAGTACTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gr47b	FBgn0041241	FBtr0088127	1	1	1	113	2R	7250564	7250644	TTTACCTGGTGTACAACGG		59	7250721	7250739	CAATGTCCACATCTTTGCC		59	NA	
Drosophila melanogaster	50	Cpr47Ea	FBgn0033597	FBtr0088190	3	1	1	140	2R	7139937	7140226	GTACAACTACGAGACAAGC		57	7139729	7139747	TAGGTGATGGTGTAGACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12391	FBgn0033581	FBtr0088205	1	1	1	176	2R	7037014	7037121	TATGGATTACCTCGAGGAC		57	7036856	7036874	GCAGATTCTTGCAAATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sec31	FBgn0033339	FBtr0088643,FBtr0088642	1	2	2	153	2R	4785817	4785901	GAGATGGAAAGCTCACTCC		59	4786018	4786036	TTCAGTCCCTGCATAAAGC		59	NA	
Drosophila melanogaster	50	LvpH	FBgn0002570	FBtr0088759	1	1	1	60	2R	4337447	4337530	GATGTGATCATCTATTCACGAC		58	4337408	4337429	GGTTGAGAACGATTACATAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3420	FBgn0033100	FBtr0086135	1	1	1	146	2R	2644251	2644269	GAGAACGGTACGATCTTCG		59	2643986	2644065	CCTCTGCTTGATCTTCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)09851	FBgn0022288	FBtr0086043	3	1	1	60	2R	1643297	1643317	GTAGAGAAGGACATCGATCAG		59	1643338	1643357	ACTTGTTTAGGACATCTTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31693	FBgn0051693	FBtr0100262,FBtr0085931	1	2	2	60	2L	22015606	22015627	GGAGCTCAGATTTAAATGTGAC		59	22015648	22015666	TTGCTTATGCCAATGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33858	FBgn0053858	FBtr0091862	1	1	1	60	2L	21526911	21526930	GGTCAATGGAAAGCTTATCC		58	21526953	21526971	CGACAGTTTGAAAGATCCA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	barr	FBgn0014127	FBtr0081348	3	1	2	80	2L	20060349	20060427	CATGAGCAACTTCAAGATGG		59	20060288	20060306	AAGTAGATGGAGTCCACAC		58	NA	Nonspecific
Drosophila melanogaster	50	CG10263	FBgn0032812	FBtr0081264,FBtr0081263	2	2	3	158	2L	19581472	19581490	ATCAATCACAGACATGTGG		57	19581332	19581350	TTAGGAGCCATAGCTACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18518	FBgn0028900	FBtr0080814	2	1	1	60	2L	15835479	15835499	CAACGCCAACTTATATGACAC		59	15835439	15835457	GCAGAATCCATCTGGAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0100611,FBtr0080709,FBtr0100610,FBtr0100612	1	4	7	82	2L	15258832	15258852	CAATAGCTACTCCGATTTCAG		58	15258698	15258791	GGGATAGATCACAATTCTTCTG		58	NA	
Drosophila melanogaster	50	elB	FBgn0004858	FBtr0080636	1	1	3	94	2L	14391196	14391323	TTATCATCCGTACGGATGG		58	14391120	14391138	TGATGGGTTTGACTGAAGG		59	NA	
Drosophila melanogaster	50	CG31765	FBgn0051765	FBtr0080584	1	1	1	202	2L	13961767	13961785	CACTGTATGTGTACCGGAG		59	13961951	13962136	ATATAGCTCTGGTTGTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5945	FBgn0032494	FBtr0080450	2	1	1	169	2L	13240691	13240709	TGAATTCAACGTAACGCTC		58	13240894	13241506	TATCCAGTTCAGGATCTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	spict	FBgn0032451	FBtr0080397	1	1	1	60	2L	12706154	12706173	TATGTAATGTTCACCACCCT		58	12706196	12706214	GGGTGAACTCCTTGAAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nub	FBgn0085424	FBtr0112642	2	1	2	119	2L	12614102	12614120	ATAAGGTCCTGGAACTGAC		58	12614202	12622983	GACTGATATCATTTGGGTCC		57	NA	
Drosophila melanogaster	50	CG14935	FBgn0032382	FBtr0080277,FBtr0080276	1	2	2	95	2L	11852014	11852090	CTTTAAGCGGTCCTATCCC		59	11852148	11852167	TGGCTAAGAAACTCTGAGAG		58	NA	
Drosophila melanogaster	50	CG5731	FBgn0032192	FBtr0079959	1	1	1	80	2L	10207543	10207561	CTCCATCGGATATTTCGGT		58	10207418	10207499	TTTCGTAAAGGTCCTCCAC		59	NA	
Drosophila melanogaster	50	CG4804	FBgn0032178	FBtr0079938	3	1	1	117	2L	10063645	10063722	AATGCCACAGAATATAAGCC		58	10063802	10063820	GACCCATCAGATAGGTCAC		58	NA	
Drosophila melanogaster	50	obst-B	FBgn0027600	FBtr0079934	1	1	1	90	2L	10037272	10038228	CAAGCTACAAACACCTCAG		58	10038281	10038300	GTAGAACTTATCGCAGATGC		58	NA	
Drosophila melanogaster	50	CG4658	FBgn0032170	FBtr0079886,FBtr0079885,FBtr0079887	2	3	3	146	2L	9959098	9959554	TCATGTCCATAGAGGTGTG		58	9959664	9959682	GATATCGATCCGGATGGTC		59	NA	
Drosophila melanogaster	50	Aats-ala	FBgn0027094	FBtr0079721,FBtr0079722	1	2	2	251	2L	8380660	8380682	GATCTAACTACGATACCGATCTG		59	8380308	8380449	ACTTCTCAGTGGCATAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lectin-28C	FBgn0040099	FBtr0079527	2	1	1	60	2L	7857744	7857764	TTGAAATGGAATCCTGGAGAG		59	7857786	7857804	GTATAGAAACGCAACGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Wnt10	FBgn0031903	FBtr0079435	2	1	1	147	2L	7375805	7377075	GAGCTGATATACAGGGCAC		59	7377184	7377204	CAGCACCATTGGAATTTACAG		59	NA	
Drosophila melanogaster	50	CG13776	FBgn0031880	FBtr0113027,FBtr0079353	1	2	2	60	2L	7014150	7014170	TAACAATCTAAACGGGTCTGG		59	7014192	7014210	CAGATAGGGATTCTGCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9523	FBgn0031812	FBtr0079257	2	1	1	162	2L	6425659	6425736	CATCCTGTCAACTATGCAG		57	6425862	6425880	GATAGTACTTGCTACGCTG		57	NA	
Drosophila melanogaster	50	chic	FBgn0000308	FBtr0079233,FBtr0079235,FBtr0079236,FBtr0079234	1	4	4	106	2L	5973673	5976627	CATGAAGACAACACAAGCC		59	5973585	5973606	CGCAAGTAATCAGATAATCTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14007	FBgn0031731	FBtr0113023	2	1	1	108	2L	5716148	5716228	GCCATTAAGTTACGGAAATGG		59	5716060	5716081	GCTTCTTTAGCATGATCATCAG		59	NA	
Drosophila melanogaster	50	CG8838	FBgn0031526	FBtr0077588	3	1	1	61	2L	3357986	3358004	GCATTTGACCCAGAAACAC		59	3358029	3358047	TAATTGCGTTCTTCTCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34393	FBgn0085422	FBtr0112637	3	1	1	150	2L	3190603	3190621	GTCAAACATATCGTTGCCA		58	3190107	3190417	TTTCTGGTCCAGACTTGTC		59	NA	
Drosophila melanogaster	50	CG3542	FBgn0031492	FBtr0077648,FBtr0077649	3	2	2	72	2L	3025568	3025589	GAATGAGCATATAGAAGTGGAG		58	3025622	3025706	AATTGAGGTCAGGGAATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2964	FBgn0031462	FBtr0077722	2	1	1	282	2L	2813905	2813924	GATACTGTACACCTTGGAGC		59	2814169	2814250	TTTCTTATCAGCAGGCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aph-1	FBgn0031458	FBtr0077716	1	1	1	60	2L	2766696	2766773	CTGGCTGATATGAGTGGTC		59	2766797	2766815	CGAAGAATAGCTCAGTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31690	FBgn0051690	FBtr0077704,FBtr0077703	3	2	2	286	2L	2712124	2718299	CTCACTTTAATCTGGGCGT		59	2718549	2718567	CTGAAGTCTTCCATCGGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5556	FBgn0031332	FBtr0077948	2	1	1	61	2L	1352719	1352740	GGTATTAGCTATTGCATCTTCG		59	1352623	1352698	TTATAGACATGACGCGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5139	FBgn0031323	FBtr0077977	2	1	1	60	2L	1198785	1198806	CTACGAAATACACAAGACAACC		59	1198746	1198764	GATGAGAGCTCCATATGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	smi21F	FBgn0016926	FBtr0077987	1	1	2	102	2L	1128211	1128229	CTCCTCGTCTCACATTGTC		59	1117515	1128147	CACTATGAAGTTCAGCTTGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13690	FBgn0031252	FBtr0078090	1	1	1	60	2L	419043	419064	CAATATAGCCGAGGTTTATGTG		59	419004	419024	CAACTTCTCCTGGTACTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:L:35C	FBgn0028889	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR31946	FBgn0051946	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG6461	FBgn0030932	FBtr0074622	2	1	1	126	X	18401607	18401626	AGGACTACCTCTACTATGGC		59	18400681	18401521	GAGCCGAAATAGTTATTGATGG		59	NA	
Drosophila melanogaster	50	CG15056	FBgn0030918	FBtr0074560	1	1	1	60	X	18310052	18310071	TCAATGATGAGAACCTTGTG		57	18310094	18310112	CTCAGATCCAATGTCTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074573,FBtr0074572,FBtr0074575,FBtr0074574,FBtr0074571,FBtr0074570	3	6	6	115	X	18285990	18286081	ACCACTCAGAATATGGCTC		58	18285893	18285911	TACGTATAGTCGCTGTTGG		58	NA	
Drosophila melanogaster	50	CG5445	FBgn0030838	FBtr0074428,FBtr0074425,FBtr0074427,FBtr0074426	3	4	4	133	X	17198383	17198401	CAAATGGCTGGTACTTTGG		59	17198822	17198843	GTTGATTTGCGGATAGATATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4239	FBgn0030745	FBtr0074270,FBtr0074269,FBtr0074268	3	3	3	212	X	16281482	16281500	AAAGGTGTACGATGGTGTG		59	16281737	16281755	AGCACAAAGATGATCGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	1	12	15	238	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978622	6978640	ATTGATCTACCTCTGTGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG33082	FBgn0053082	FBtr0070174	3	1	1	60	X	924950	924970	CTCGAATTTAATGGCAGTAGG		58	924991	925010	GCAGAGTTTGCCATAATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40609	FBgn0085501	FBtr0113912	1	1	2	107	U	5681766	5681786	CAGACGCCAATACTAATACCA		59	5681446	5681697	CTTTCATCGCTTGGTTGTC		59	NA	
Drosophila melanogaster	50	Rad23	FBgn0026777	FBtr0089121,FBtr0089122	1	2	2	95	4	330248	330326	GTATTGCAGCAGATTGGTC		58	330384	330403	GTCAATCGGTTGATTAAGCA		58	NA	
Drosophila melanogaster	50	CycG	FBgn0039858	FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799	2	5	5	91	3R	27426460	27426478	ACATCAAGGAGTCGTACAC		59	27426317	27426407	ATCAGGAATCCTCATGTACTG		58	NA	
Drosophila melanogaster	50	CG15534	FBgn0039769	FBtr0085644	3	1	1	77	3R	26258989	26259007	ATGTCTTGGAAACCACGAG		59	26259681	26259699	CAGTCAACTCTAAGGGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tl	FBgn0003717	FBtr0085059	1	1	2	147	3R	22652406	22663446	AGTTCTGAGCAAGTGAACC		59	22663557	22663575	TATGCTCATCTCACTGCAC		59	NA	InUTR
Drosophila melanogaster	50	CG33970	FBgn0053970	FBtr0100013,FBtr0100012	1	2	2	103	3R	22182065	22182083	GAACAATTCTGTCCAGTGC		59	22182150	22186296	GTCACATATTGCACAACCA		58	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	2	5	6	82	3R	20045369	20045389	CATGAACATCTACAACGAACC		59	20025659	20045326	GTGGATTCACGGTAAATGAC		58	NA	
Drosophila melanogaster	50	CG31457	FBgn0051457	FBtr0084405	1	1	1	60	3R	18952919	18952939	GAAGATGAACTTAAGCAGTCC		58	18952879	18952897	GTCTGTTTCGTAGAAGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13855	FBgn0038960	FBtr0084225	2	1	1	96	3R	18233912	18233986	GTGAACTAAGATTACCGCG		58	18234046	18234064	ATCTTGTAGTGATCTCGCG		59	NA	
Drosophila melanogaster	50	Fas1	FBgn0000634	FBtr0112803	2	1	4	138	3R	12455313	12457341	CAGTTAGGTTCTACAGCCT		58	12457443	12457461	ATGTGATAGAGCACATGGG		59	NA	
Drosophila melanogaster	50	ird5	FBgn0024222	FBtr0083236	3	1	1	65	3R	11872859	11872877	TGCGAGAAAGACCTATTCG		59	11872744	11872762	AATTATCGCACCATTGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Spn5	FBgn0028984	FBtr0083142,FBtr0083141	3	2	2	95	3R	11029202	11029283	GAACTTAATCCTATCCTTGCCA		59	11029128	11029146	GATGGAAATCGTCTCGGAG		59	NA	
Drosophila melanogaster	50	pr-set7	FBgn0011474	FBtr0082929,FBtr0082928,FBtr0082930	1	3	3	97	3R	10142502	10142520	CGTTTGATGAAGGTCACTC		58	10142581	10142670	AAGGGAACTCCTATTGTGC		59	NA	
Drosophila melanogaster	50	CG6908	FBgn0037936	FBtr0082437	2	1	1	90	3R	7514792	7514875	TTGACAAATGATGTGCAGG		58	7514720	7514739	TTAGAACTCGGAATTCTCCC		58	NA	
Drosophila melanogaster	50	CG6830	FBgn0037934	FBtr0082439	1	1	1	60	3R	7507414	7507432	GTGTGGATGAGTACTTGCA		59	7507317	7507336	AGTATTCTGTCGACATACGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	scpr-C	FBgn0037879	FBtr0082351	3	1	1	108	3R	7052001	7052019	AAGAACCGTTATGGAGCTG		59	7052091	7052109	CATTCCATGCCTACATCGT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0082256	2	1	6	109	3R	6359727	6387645	ATACATCAGACCCTGATGGA		59	6359637	6359655	ACTACCGAGGAAGACTGAG		59	NA	
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190	1	8	8	80	3R	5954403	5954421	CTCCAGGGATTACTTGAGC		59	5954227	5954361	TATTCATGAACCGGATAGGTC		59	NA	
Drosophila melanogaster	50	Prosbeta3	FBgn0026380	FBtr0082010	3	1	1	110	3R	4831658	4831676	AAGAAGGTGTTCCACATCG		59	4831566	4831585	TGTCTCGTACAGATTCTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Alh	FBgn0037471	FBtr0113199,FBtr0081615	1	2	6	130	3R	2921228	2921310	GAAGATGATCTCAGCAGCA		59	2921116	2921134	TTGTCGTTCTTATGCAACG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	dj	FBgn0019828	FBtr0089742,FBtr0089741	2	2	2	61	3R	2885313	2885331	GTCTCTATTCACGATCCGC		59	2885356	2885374	AACTTTCGTTGCATTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33056	FBgn0053056	FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311	1	5	5	111	3L	21192061	21192083	GGATGGTAGACATATCTACAACC		59	21191820	21191990	GTGCTCCCTCATATGTTCC		59	NA	
Drosophila melanogaster	50	CG3698	FBgn0037023	FBtr0078273	2	1	1	62	3L	20791339	20791357	TGAAGAAGATCTTCCCACG		58	20791295	20791313	TCTGACTGTGCTGATATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4074	FBgn0037017	FBtr0078280	1	1	1	60	3L	20762323	20762342	CGATGCTTTCTATAACTCGG		58	20762282	20762302	AGATAACTCCAGGCTATTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32225	FBgn0052225	FBtr0074845	1	1	1	155	3L	20297929	20297947	CTTCATGTTCAAGGACAGC		58	20297735	20297810	TTGAAGTATCTCCAACCGC		59	NA	
Drosophila melanogaster	50	CG10725	FBgn0036362	FBtr0089323	1	1	1	103	3L	13431284	13431361	GTGCATGAATGAGATAGCTG		58	13431427	13431445	ATCCAATACACTCGACCTC		58	NA	
Drosophila melanogaster	50	GlcAT-P	FBgn0036144	FBtr0076189	3	1	3	86	3L	11176788	11176806	CACCTGCATTTATATGGCG		59	11175730	11176739	GATTTCTCCTGATGCTTGAC		58	NA	
Drosophila melanogaster	50	CG3967	FBgn0035989	FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480	2	5	5	119	3L	9410906	9411455	CATCACAAACAGTCCTAACAC		59	9410807	9410825	TGTGTTATCTGCTGCAGTC		59	NA	
Drosophila melanogaster	50	Hn	FBgn0001208	FBtr0100225,FBtr0076811	3	2	2	115	3L	7755646	7755730	AATTGTCCACCATCTTCTGG		59	7755808	7755826	GAGGCAATACTCCAGTTCC		59	NA	
Drosophila melanogaster	50	enc	FBgn0004875	FBtr0073153,FBtr0112845,FBtr0073152,FBtr0112844	3	4	4	104	3L	3839509	3839636	CAATGATGATACAAGCGCG		59	3839702	3839722	GTTTGGGTATCCTATATCGGT		58	NA	InUTR
Drosophila melanogaster	50	mtacp1	FBgn0011361	FBtr0072677	2	1	2	212	3L	1330899	1330917	ATCGAGGACATCAAGTTCC		59	1331408	1331426	CTTAATAATGTCGGCAGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3065	FBgn0034946	FBtr0072153,FBtr0072155,FBtr0072154	2	3	3	60	2R	19859018	19859039	GATAAAGATTAAGCTGGAACGG		59	19859060	19859078	TTCAGGAGATACGATCTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10082	FBgn0034644	FBtr0071662,FBtr0071661	3	2	2	82	2R	17542999	17543106	CTACTCTTGCTCACTGCTC		59	17543152	17543170	ACTCATCCTGACTCATCGA		59	NA	
Drosophila melanogaster	50	Xpd	FBgn0015844	FBtr0071577,FBtr0071576	1	2	2	83	2R	17060261	17060279	ACTCGATTTCGATCCAGTG		59	17060324	17060407	CCCTTCGATACAATCATAGGA		58	NA	
Drosophila melanogaster	50	CG15111	FBgn0034419	FBtr0086581,FBtr0086580	3	2	2	69	2R	15027274	15027292	GTATTCCGTAACGTTCCAG		57	15027388	15027406	GAGATCAAGTCCTTTGGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	3	8	8	99	2R	14032395	14032483	AGGAAAGAATTCTGAGAAGC		57	14032544	14032563	CTCAATCATCGGATACAGAC		57	NA	
Drosophila melanogaster	50	CG14487	FBgn0034272	FBtr0086865	3	1	1	60	2R	13632467	13632488	GCCAGAAGAATTCCAATTAAGG		59	13632508	13632527	GGAACATATTGGAAGCACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15609	FBgn0034180	FBtr0114626,FBtr0114629,FBtr0087019,FBtr0114627,FBtr0114628	1	5	6	93	2R	12901358	12901376	ATCACACCATATCCGTCAC		59	12901222	12901301	ATTGGAGTGACATCTTCGA		58	NA	
Drosophila melanogaster	50	CG30098	FBgn0050098	FBtr0087168	3	1	1	116	2R	12242539	12242557	ATAACAGATTCGCATGTGG		57	12242322	12242340	TCGACGAATCGTATTCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17034	FBgn0033837	FBtr0087708	2	1	4	94	2R	9306556	9306574	TTTAAGACACTGACGGAGG		58	9303451	9306499	GTTTCCGTGAATGAAGATCG		59	NA	
Drosophila melanogaster	50	CG18812	FBgn0042135	FBtr0088936,FBtr0088937,FBtr0088935	1	3	3	87	2R	3607184	3607202	GAACAACTATCCATCGCTG		58	3607049	3607068	GATATAGAAGGCCTTCAGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34216	FBgn0085245	FBtr0112409	3	1	1	60	2R	3591940	3591959	CTGAATCGCAAGTACAAGTG		59	3591899	3591918	ATAGGAGCAATACATCTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012	2	6	7	107	2R	3293620	3293715	CAAATATGACTTCAAGCCAGC		59	3287508	3293552	CCGGAACTTTCAGAATTTGG		59	NA	
Drosophila melanogaster	50	CG17472	FBgn0032868	FBtr0081382	3	1	1	62	2L	20634580	20634600	CTCTTAGTATTGGCGAATCTG		58	20634692	20634713	CCTTTCGTGTTCATCATATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0081213,FBtr0081210	2	2	6	178	2L	19410627	19426207	GGATGCTCTATTAGCCGAC		59	19410401	19410485	AGTGCTCTTGATACACCTG		58	NA	
Drosophila melanogaster	50	ninaD	FBgn0002939	FBtr0081031	3	1	1	83	2L	18083178	18083260	TCAGAACTTAGGTTGGCAC		59	18083307	18083325	TATAAGAATGCAGCCCAGG		59	NA	
Drosophila melanogaster	50	CG18301	FBgn0032265	FBtr0080094	2	1	1	108	2L	10532833	10532851	AGATCGTTATGATGCAGGC		59	10532923	10532996	CTTAGGAAGGAGGCAACTG		59	NA	
Drosophila melanogaster	50	KdelR	FBgn0022268	FBtr0080023,FBtr0080021,FBtr0080022	3	3	3	60	2L	10427496	10427515	TCAATCATGAGTTTACCGTG		57	10427537	10427556	ACCGATTCCAAATAGATCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31716	FBgn0051716	FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080009,FBtr0080012	2	5	6	90	2L	10398212	10398292	GATATCAGATTTGCCGATTCTG		59	10398343	10398361	GGATTCTCGGGATACTCCT		59	NA	
Drosophila melanogaster	50	Scgalpha	FBgn0032013	FBtr0079597	2	1	1	100	2L	8304973	8305055	CATGAGATCTCAGAGTCCC		58	8305119	8305137	AAGTACCGCCCTTATATGG		58	NA	
Drosophila melanogaster	50	CG4502	FBgn0031896	FBtr0079417,FBtr0079416	1	2	2	167	2L	7196232	7196327	ACGACAAGATCACAAGGTG		59	7196024	7196044	TCGAATAGACTATCGTTGACG		59	NA	
Drosophila melanogaster	50	CG3277	FBgn0031518	FBtr0114460	3	1	1	108	2L	3315055	3315073	TGATTATCGATCCTACGGG		57	3315210	3315287	ATTATGGAGTTGCTCACAC		57	NA	
Drosophila melanogaster	50	CG31938	FBgn0051938	FBtr0077883	1	1	1	83	2L	1729106	1729125	CAGCCTCCATATCGTATCTC		59	1729171	1729189	TCGCGTAAATCAGATCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33502	FBgn0053502	FBtr0070055	1	1	1	102	X	21482189	21482207	GGAGAGCTTGAAGTTCCTG		59	21481054	21482123	CAATTTGGCCAAAGGACTG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Arpc3B	FBgn0065032	FBtr0074410	1	1	2	115	X	16999010	16999524	GAAGTTAAGTCGGAGGTGG		59	16998913	16998931	GTATAGAGCTCCTGCTGAC		58	NA	
Drosophila melanogaster	50	Rab39	FBgn0029959	FBtr0071072	1	1	1	132	X	7629366	7629812	GAGTTATCCGATCCCACAG		59	7629908	7629926	AGTAGGACTTGGTGATCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3587	FBgn0023521	FBtr0070321	3	1	1	80	X	1835080	1835165	TACTTATAATGCACCGCTG		57	1835209	1835227	AGGATCTCCTTGATGATCG		58	NA	Nonspecific
Drosophila melanogaster	50	Exp6	FBgn0001337	FBtr0070098	2	1	1	80	X	367846	367865	AAGCAATCGTTTGTATAGCG		58	367727	367804	ACTTGAGCGTATAGGTTGTC		59	NA	
Drosophila melanogaster	50	ewg	FBgn0005427	FBtr0100577,FBtr0100579,FBtr0089441,FBtr0089442	2	4	8	173	X	165636	166462	ATGTTGATTACACCACGCA		59	165419	165437	GAACGGTTTGAATGGTAGC		59	NA	
Drosophila melanogaster	50	CG40769	FBgn0085516	FBtr0113929	3	1	1	136	U	8483497	8483515	TCCGTACCAGAAGTTTCTG		58	8483379	8483397	ACAAATGTGGTGACAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41012	FBgn0085553	FBtr0113966	2	1	1	67	U	6176421	6176439	TACTGGTACCGTATTGGTC		58	6176268	6176390	CAATACCGTACCAGGAACC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0089226,FBtr0089223,FBtr0089225,FBtr0089224,FBtr0100296	1	5	5	80	4	1036098	1036119	CTTAGTACCAAAGCAAAGTTCC		59	1035967	1036058	AGAGTTTCATACTTGTGCGA		59	NA	
Drosophila melanogaster	50	CG2003	FBgn0039886	FBtr0085870,FBtr0085871	1	2	2	63	3R	27815036	27815111	GAGATTCCTAAGACGGTGC		59	27815138	27815156	CATAGAAGAGCAGACCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31131	FBgn0051131	FBtr0085262	1	1	1	60	3R	23788448	23788467	TATTCCACAACAACTTCGAG		57	23788407	23788426	TGTCTGAATTGCTTTCTGTC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31184	FBgn0051184	FBtr0084505	3	1	1	98	3R	19822421	19822499	TCTTCACGCCTTTGATCAG		59	19822560	19822579	TACACCTCCTCATAGGTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ino80	FBgn0086613	FBtr0083771	2	1	1	80	3R	15225985	15226004	CCCAGATTGATTCATGAGGA		59	15225858	15225945	GATATTGAACCGGTTATAGAGC		58	NA	
Drosophila melanogaster	50	rin	FBgn0015778	FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082800,FBtr0082796	1	5	5	281	3R	9476209	9476538	CAACAAGGGTGACTTTGAG		58	9476897	9476915	TTCTCCGGGAAGTATAGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Su(var)3-7	FBgn0003598	FBtr0082736	2	1	1	87	3R	9091969	9091987	CGATTACCAGCTTCCTACG		59	9092038	9092124	CGAATATCTGAAGAGCCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7966	FBgn0038115	FBtr0082715	1	1	1	80	3R	8875355	8875443	GGGATAAGCAGTTCTATCCA		58	8875294	8875312	TTCCTCCATTCACAGTGTC		59	NA	
Drosophila melanogaster	50	CG32937	FBgn0052937	FBtr0082089	1	1	1	60	3R	5552441	5552460	TTTAGGCAGAATTGGTTGTC		58	5552400	5552420	CTTGGACGCTTTACTTAAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	by	FBgn0000244	FBtr0082119	3	1	1	61	3R	5358371	5358390	CGAATACGAATGTGAATTCG		57	5358329	5358349	CTTTATCATATCGCCAGTACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rlb1	FBgn0014022	FBtr0082062	1	1	1	170	3R	5339111	5339188	GGTGATATCCAACAAGAAGGT		59	5339320	5339338	TTTAGAGCCTTCAACTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trbl	FBgn0028978	FBtr0078235	3	1	1	69	3L	20393562	20393580	GGATTATCCTCAGGGACCT		59	20390561	20393529	TACTGCAGTTTCGTTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32202	FBgn0052202	FBtr0075051	3	1	1	67	3L	18675422	18675440	AAACTGTATGACAGGTGCC		59	18675468	18675550	ATCCCATTTACTCTCATCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17824	FBgn0036234	FBtr0076046	1	1	1	60	3L	11975952	11975970	CAATAACCAACATGTGCCT		58	11975991	11976012	CATTAGATAACCATGTTTGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33523	FBgn0053523	FBtr0091478,FBtr0091477,FBtr0091475	1	3	4	93	3L	5921732	5921813	ACGTACAAGATCCAAACCA		58	5921870	5921888	ATATGTTGATGGTGGCCTC		59	NA	
Drosophila melanogaster	50	CG15012	FBgn0035528	FBtr0073240	3	1	1	137	3L	4291805	4291884	GGGAGAACATATTTCTGATGAG		58	4291689	4291707	TTGTTGATGAAGTCGTCGA		59	NA	
Drosophila melanogaster	50	Pde8	FBgn0034886	FBtr0072074,FBtr0072077,FBtr0072075,FBtr0072076	2	4	5	102	2R	19562500	19562639	GTTAATAGATGCGTAGCGG		58	19562705	19562723	GAGTGGACATGACATTGTG		58	NA	
Drosophila melanogaster	50	wmd	FBgn0034876	FBtr0113112	1	1	2	206	2R	19435019	19435037	TACTTTCTCATCTCGGCCT		59	19433333	19433351	CTGGAAGCTGTGTATCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	robo	FBgn0005631	FBtr0071923,FBtr0071922	3	2	2	80	2R	18584450	18584533	AGAAATATGTAGAGGGCCTG		58	18584389	18584407	CCATAACAGTGATCGAGTG		57	NA	
Drosophila melanogaster	50	CG30273	FBgn0050273	FBtr0071866	3	1	1	245	2R	18554829	18554903	AACATCAAGCTGTATTGCC		58	18555182	18555201	ACTAATCGCTGTTGTAGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15127	FBgn0040730	FBtr0086482	2	1	1	75	2R	15568733	15568751	ATCGATCCCTACTATCAGC		57	15568676	15568694	GCATTATCACCTCTACGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6459	FBgn0034259	FBtr0086892	3	1	1	189	2R	13559529	13559547	AATGTGAACCATACGGTGG		59	13559300	13559377	AGAAGACATCGTTGTACTCG		59	NA	
Drosophila melanogaster	50	CG15704	FBgn0034103	FBtr0087136	2	1	1	98	2R	12167620	12167639	GATAGATAGCTCAGCTGAGC		59	12167700	12167718	CACTCCCAAGTACAGACAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG34229	FBgn0085258	FBtr0112422	3	1	1	174	2R	7729257	7729359	GTTTGAAGCAGTTTATGCTG		57	7729496	7729514	TGAAGGAGCATCTTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1868	FBgn0033427	FBtr0088542	2	1	2	81	2R	5471135	5471153	CTGCTAAAGAACCAACCCA		59	5471017	5471092	CAGGATCTGTAAGGATTTCCC		59	NA	
Drosophila melanogaster	50	CG8058	FBgn0033382	FBtr0088580	1	1	1	67	2R	5021254	5021272	TTACCTTATCCAGGTGGTC		57	5021374	5021392	TCAGATACTGCTTGAACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9253	FBgn0032919	FBtr0081468	1	1	1	247	2L	21143578	21143596	TTTGTGTCAAGCATGTGAC		58	21143807	21144014	TACCAAGGGCTTCAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)37Cb	FBgn0086444	FBtr0081163	2	1	1	116	2L	19126464	19126482	GTACAAGAAGCAACTGCTG		59	19126306	19126384	ACGTATTCAGATCGCTCTC		58	NA	
Drosophila melanogaster	50	Lrr47	FBgn0010398	FBtr0080092	2	1	1	65	2L	10517935	10517953	CTTCGAGATATGCACCCTG		59	10517981	10518061	ATCTTGGTCAGCTTGTTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13130	FBgn0040965	FBtr0079974	3	1	1	77	2L	9983869	9983888	TTTCATTAGATGAGTTGGGC		57	9983811	9983829	GTCCTGGGATCGAAATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13397	FBgn0014417	FBtr0079711	2	1	1	81	2L	8411349	8411367	ATCAGTAGAGTAATCGGCG		58	8411207	8411305	TCTGAAAGCTTCGTAAATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8475	FBgn0031995	FBtr0079638,FBtr0079639	3	2	2	97	2L	8195698	8195716	ATGGAGCGTTGTCTATGTG		59	8195560	8195637	CATCAACTCCCTTTGAGCT		59	NA	
Drosophila melanogaster	50	Taf10	FBgn0028398	FBtr0077717	2	1	1	71	2L	2767998	2768016	GGACATCAGTGTTACACCC		59	2768051	2768069	GGCGAGTCTATATCCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RFeSP	FBgn0021906	FBtr0077914	3	1	2	69	2L	1613031	1613049	GATGATGTAGGTACCGTGG		59	1612980	1612998	CACACGTTGCTAAAGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11023	FBgn0031208	FBtr0089256	1	1	1	101	2L	8527	8545	ATTCCGTTAACAGAGGAGC		59	8687	8706	TTCGGTAGTTATGTGTAGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	tRNA:CR30326	FBgn0050326	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:S7:23Ea	FBgn0011984	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	roX2	FBgn0019660	FBtr0073515	3	1	2	60	X	11473568	11473586	ACGTTACTTCCGAGATCCT		59	11473609	11473628	CTACACTGGTTGGATTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210	2	5	8	86	X	21247686	21250626	ACATGACGCTTATGAAATGG		58	21250675	21250693	CAAAGTGGCCATAGAAGGT		59	NA	
Drosophila melanogaster	50	CG32511	FBgn0052511	FBtr0077258	3	1	1	94	X	21027630	21027648	ATTGATTTGGGTGGTTCCT		59	21027554	21027572	TTGTTGTACGAGAAGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0112569	2	1	5	126	X	20663759	20676865	AGTAGATCATCGGTGTCTC		57	20663651	20663669	TGGGATTTCCTACGTACTG		58	NA	
Drosophila melanogaster	50	CG14225	FBgn0031055	FBtr0074757	2	1	1	189	X	19567494	19568546	TAGGTACGGAACCAAAGTG		58	19567323	19567342	GTAGCTCTCCAGGTAAATCC		59	NA	
Drosophila melanogaster	50	Pfrx	FBgn0027621	FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720	1	8	8	60	X	19401733	19401752	GTCGTCTACAATAACGAGGG		59	19401772	19401793	GGATGTTCATCAGGTAGTAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pfrx	FBgn0027621	FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720	3	8	8	60	X	19402026	19402044	GTTAAACGAGATCGATGCC		58	19402068	19402086	CTTCTCCTTGATTTGCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8034	FBgn0031011	FBtr0074684	3	1	1	183	X	19177216	19177397	CCGTTCAATTATGGCTGAG		58	19177051	19177069	TGTGATCACAAATAGGGCT		58	NA	
Drosophila melanogaster	50	CG7358	FBgn0030974	FBtr0074652	1	1	1	225	X	18784509	18784786	AATACTGGCTCAGGTAAGC		59	18784302	18784320	AATATCGTCATCGCTGTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Frq2	FBgn0083228	FBtr0074547,FBtr0074546,FBtr0074548	1	3	3	87	X	18095255	18095333	CCAGATGGTAGGACAACAG		59	18095383	18095402	GTTCTTGTCCATCTGATCGA		59	NA	
Drosophila melanogaster	50	dik	FBgn0030891	FBtr0074510	1	1	1	63	X	17980256	17980274	ACAGATGCTCTCCAATGTG		59	17980301	17980319	GTCGAGGCTATCATACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dhc16F	FBgn0013809	FBtr0074509	1	1	1	80	X	17959720	17959795	AAGACGATATTTCGAGCCT		58	17959838	17959857	CGATGGATAGTAGTTGACCT		58	NA	
Drosophila melanogaster	50	CG12993	FBgn0030840	FBtr0074437	2	1	1	119	X	17341273	17341292	ATCTTATACCTACTGCGGAC		58	17341079	17341191	TAGCTTCTGGCTAATTCGG		59	NA	
Drosophila melanogaster	50	CG4829	FBgn0030796	FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337	1	5	5	90	X	16718725	16718743	GAAGGGATACCATGTGTCG		59	16718794	16718964	CAAATAGATTTGGTACTGCTCG		59	NA	
Drosophila melanogaster	50	r	FBgn0003189	FBtr0089734	3	1	2	164	X	16554458	16554476	TTCCAGATACCCAAGAACG		58	16554668	16559232	CACGGATTCCACATTAACTC		58	NA	
Drosophila melanogaster	50	Nup153	FBgn0061200	FBtr0113475,FBtr0074284	1	2	2	60	X	16494295	16494313	GGAAGAGGATGAATCCTCG		59	16494337	16494421	CATGATGGAGTTGTTGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	U2af50	FBgn0005411	FBtr0074234	2	1	1	86	X	16251574	16251592	TATTTCGACAGTGGTTCCG		59	16251440	16251525	AGTTCCTTAACCTGATCGTC		59	NA	
Drosophila melanogaster	50	CG9216	FBgn0030726	FBtr0074252,FBtr0074253,FBtr0074254	3	3	3	96	X	15989525	15989543	CTGTTGACGGATTTAAGGC		58	15989383	15989402	AAATATCATCTGCCTGAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	1	9	9	110	X	15788792	15788878	AGTTACCGAATATGGCGAG		59	15788952	15788970	TTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	Gbeta13F	FBgn0001105	FBtr0074109,FBtr0074106,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107	2	6	6	60	X	15755481	15755499	GCTCATTATCCGACTAAGC		57	15755523	15755614	CTCTTGTTAGATGGTGGCT		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	acj6	FBgn0000028	FBtr0074015,FBtr0100328	3	2	4	92	X	15271599	15271617	TCATCATCCTGCGATTCTC		59	15265710	15266194	GAAGATATCACCATTCTGACGT		59	NA	
Drosophila melanogaster	50	HDAC6	FBgn0026428	FBtr0074009,FBtr0074010,FBtr0074008	1	3	3	156	X	15229749	15230327	TTTACATTCATCCGTCCAC		57	15230447	15230465	CAATAACCGTTGTACTCGG		58	NA	
Drosophila melanogaster	50	CG15028	FBgn0030618	FBtr0112985	2	1	2	60	X	15075466	15075487	TTCTATGGGCCTCATTATTGTC		59	15075508	15075526	AGCGCAGTACATAGATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5599	FBgn0030612	FBtr0073964	1	1	1	111	X	14981973	14982054	AACATAGGAGTGATTGGCG		59	14982129	14982147	CATCCTTGTCGTTGAAACG		59	NA	
Drosophila melanogaster	50	rdgB	FBgn0003218	FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194	2	4	4	83	X	13663021	13663039	TATTATCCGGACAATGGCT		58	13663084	13663187	GTCAATTACGTCTACGATACG		58	NA	
Drosophila melanogaster	50	CG15744	FBgn0030466	FBtr0073756	3	1	1	186	X	13182929	13183003	CAAGCTTAAGTTGCTCGAC		59	13183153	13183171	CGTCTCACAATGGAAATCC		58	NA	
Drosophila melanogaster	50	CG15927	FBgn0030389	FBtr0073647	3	1	1	60	X	12349257	12349275	CGGCCAATTATCAAGAGGA		59	12349299	12349317	ATCCATGGTGAATCGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dlic2	FBgn0030276	FBtr0073441,FBtr0073443,FBtr0073442	1	3	4	94	X	11049247	11055097	AAAGGAGAACCTATGGTCG		58	11055153	11055173	TGTCGCCTAATACTAGTACAG		58	NA	
Drosophila melanogaster	50	CG11126	FBgn0030265	FBtr0073433	1	1	1	80	X	11001472	11001490	GAGTTGGAGTAACGTGACC		59	11001534	11001614	TTGTAGGTGATGTTGCCAG		59	NA	
Drosophila melanogaster	50	CG9686	FBgn0030158	FBtr0071389	3	1	1	117	X	9774278	9774296	GTAGCGATCTCAAGGATCG		59	9774375	9774395	ATGTCCGGATTGATAATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gga	FBgn0030141	FBtr0071363	2	1	1	137	X	9495408	9495426	ATCCACAAATGTGACGGAG		59	9496196	9496214	TACTTCTTCGATACCAGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	AP-1gamma	FBgn0030089	FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297	2	4	6	118	X	9005030	9005125	CGAGCATGGATTTAATCCAG		58	9005449	9005467	GAATCTGTCGGATGAGGTC		59	NA	
Drosophila melanogaster	50	CG15364	FBgn0030075	FBtr0071261	3	1	1	60	X	8934287	8934307	ATACCGATCCATTTAGAACCG		59	8934329	8934347	GTGCATTACCCATTAGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33181	FBgn0053181	FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451	1	5	5	80	X	8408690	8409225	CCTCTGCATAAGTGGTCTG		59	8409269	8409287	ATCGGTTGAAACACTACGA		58	NA	
Drosophila melanogaster	50	sn	FBgn0003447	FBtr0071101,FBtr0071100,FBtr0071102	2	3	3	84	X	7879376	7879471	AGGATCTGCATAAGATCGC		59	7879519	7879537	AATCGGTTCCATCATCCAG		59	NA	
Drosophila melanogaster	50	CG32727	FBgn0052727	FBtr0071056	2	1	1	61	X	7301629	7301649	AAGTATTAGTCCTAACGCTCC		59	7301672	7301690	TTCGATCCGGATGTTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	2	12	15	238	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978622	6978640	ATTGATCTACCTCTGTGCA		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG5928	FBgn0029836	FBtr0100295,FBtr0070871	3	2	2	81	X	5962703	5963094	ACACCTTTATTCAGAAGCC		57	5963139	5963157	TTGCCTCCTATGATATCCA		57	NA	InUTR
Drosophila melanogaster	50	CG2982	FBgn0029704	FBtr0070649,FBtr0070648	1	2	2	60	X	4214950	4214969	CTTGAGTGTTTACCAACAGC		59	4214992	4215010	AACCATGGGCATTAGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14270	FBgn0029665	FBtr0070590	3	1	1	60	X	3379092	3379110	GGAATGCTGTTCATGTACC		58	3379050	3379068	GAGTCATAAAGGCCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2650	FBgn0000092	FBtr0070504	3	1	1	61	X	2587207	2587226	AACATCACCGACTACAAGAC		59	2587107	2587126	AGATTCGACAGGTCAAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3078	FBgn0023524	FBtr0070415	3	1	1	172	X	2151521	2151923	AGATGATGGAGCACTTCAC		59	2151367	2151385	GTTCAGCGTTATCAATCGC		59	NA	
Drosophila melanogaster	50	CG4061	FBgn0025630	FBtr0070330	2	1	1	61	X	1968352	1968373	GCCGGTAAATATTGCTATTGAC		59	1968395	1968413	GCCACAAACGATGTATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF2B-epsilon	FBgn0023512	FBtr0070350,FBtr0070351	1	2	2	60	X	1814874	1814893	ATTCCATGATGGATTGTCTC		57	1814772	1814790	CGCACTAGATGATTCTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	dor	FBgn0000482	FBtr0070269	2	1	1	100	X	1561769	1561787	GATCTCTTACGCATCGAGG		59	1561850	1561931	TGATTGTAATCCCTCAGAGC		59	NA	
Drosophila melanogaster	50	O-fut2	FBgn0027791	FBtr0070296	2	1	1	60	X	1359770	1359790	CTTTACGACGTAAACATCTCC		58	1359730	1359748	CCATGCGAATATAGACGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SNF1A	FBgn0023169	FBtr0070216,FBtr0070217,FBtr0070218	2	3	3	60	X	1271866	1271885	ATAATGCTCGAGGTATACCG		58	1271906	1271926	GATTGATGATCTTCCACTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41549	FBgn0085681	FBtr0114130	1	1	1	158	U	9114727	9114745	TATCTATGTGGCAGATGCG		59	9114587	9114607	CAGTACTCCTTGATAGTTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41012	FBgn0085553	FBtr0113966	1	1	1	126	U	6176480	6176498	GTAATCGGTCCCGTAATCG		59	6176268	6176390	CAATACCGTACCAGGAACC		59	NA	Nonspecific
Drosophila melanogaster	50	CG40813	FBgn0085521	FBtr0113934	1	1	1	60	U	3136864	3136882	AGAACCATCTCGAGTTCCT		59	3136906	3136924	ATGGCTTTCTTGACTTCCT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40267	FBgn0058267	FBtr0113851	1	1	2	131	U	367388	367406	AAAGAAGGGTTACGAGTGC		59	326527	367255	ACGCCGTTTAGTCTTACAG		59	NA	
Drosophila melanogaster	50	Caps	FBgn0053653	FBtr0091630,FBtr0091631	2	2	3	104	4	1259629	1259648	CTGTTGACATGGATAGAGTC		57	1259714	1265686	GCAAATTGTCATCAGTTCTC		57	NA	
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0089328	2	1	7	197	4	1128890	1128908	CGTCTATGCTTTACGACAG		58	1131505	1131922	AGGACGAATTTATCAAGCC		57	NA	
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211	3	4	7	199	4	1080210	1080228	TTGGGAGTACAAGCTAAGC		59	1079962	1080047	TGAGAAGAGTCCATTGCAG		59	NA	
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	3	8	8	80	4	671648	672941	TAACAGCACAGATTGATGGT		59	671587	671605	TCAAATACGGGTGAAAGCT		59	NA	
Drosophila melanogaster	50	CG9935	FBgn0039916	FBtr0110907,FBtr0110906	3	2	3	105	4	660290	660308	AATCCTATCGAGAACGCAG		59	660145	660222	TTTCTATCACTGAGTCCCGA		59	NA	
Drosophila melanogaster	50	Eph	FBgn0025936	FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086	1	4	5	108	4	640795	640889	GCTCAACAGATATCCAGGT		58	640961	640979	TTATAGTGTCGAGTTGCCG		59	NA	
Drosophila melanogaster	50	Asator	FBgn0039908	FBtr0089108,FBtr0089109,FBtr0089107	2	3	3	80	4	499215	499233	AACAAACTCCCAAGTAGCC		59	498699	499173	AGCTTCGTATACTGTACATCC		59	NA	
Drosophila melanogaster	50	Ank	FBgn0011747	FBtr0089172,FBtr0089171,FBtr0089174,FBtr0089173	2	4	4	85	4	142537	142555	TACAACATGAGGCTAGTGC		59	142417	142489	AATATCCGCCTGATTAGCAC		59	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156	3	9	10	82	4	103361	106346	ATCCTAAGATGGGCTTAACTC		58	106387	106408	CATATCTGAACTTAGCATTGGG		58	NA	
Drosophila melanogaster	50	snoRNA:Me28S-U1554	FBgn0086060	FBtr0114336	3	1	1	64	3R	22630251	22630272	GCCAGCGTAGATATTATATCAC		58	22630297	22630315	CTATGGTTATGCCTCTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me18S-G1189	FBgn0086058	FBtr0114334	1	1	1	62	3R	10197446	10197464	TAATGATGCTGGACTGAGC		59	10197402	10197423	CAGATTTCAAGATCTCAAGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me18S-G1358a	FBgn0086053	FBtr0114329	1	1	1	60	3R	5179997	5180016	TGATGATATTTCCATGCACC		58	5180038	5180057	GAAATCCATAATCTGCACGA		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	ttk	FBgn0003870	FBtr0085827,FBtr0085825,FBtr0085829	1	3	6	128	3R	27554189	27558647	AACAGCACTTCCGTTACTC		59	27558739	27558757	GGAAATCGTTTCCGAAGGA		59	NA	
Drosophila melanogaster	50	CG1746	FBgn0039830	FBtr0085773,FBtr0085774,FBtr0085772	2	3	3	207	3R	27043629	27043647	AGTACTTGCGACCATTGAG		59	27042878	27042897	AATACTGTTCCGATACCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9702	FBgn0039787	FBtr0085664	1	1	1	115	3R	26407048	26407066	ATACATCGCCTTCATTCCC		59	26407145	26407221	CTAGATCGGAACGTTTGCT		59	NA	
Drosophila melanogaster	50	tmod	FBgn0082582	FBtr0113483	2	1	7	102	3R	26398781	26399968	CAACATCGACAGAATCTTCC		58	26400033	26400051	GTTATAGGCGACCAGATCC		59	NA	
Drosophila melanogaster	50	tmod	FBgn0082582	FBtr0085659,FBtr0085661,FBtr0085663,FBtr0085658,FBtr0085662,FBtr0085660	3	6	7	190	3R	26398542	26398560	CACCATCGAGGAGTTTAGG		59	26398787	26402912	GTTTCACACGTATTCTGTCG		59	NA	
Drosophila melanogaster	50	CG7911	FBgn0039735	FBtr0085606,FBtr0113308	2	2	2	65	3R	25829745	25829763	AGTGACCTTCAAACTGGTG		59	25829613	25829716	AAGTTCATCTCGACCTTGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	DopR2	FBgn0015129	FBtr0085468	2	1	2	210	3R	25466369	25466387	ATCCTGTGATTTACGCCTG		59	25464739	25464757	TATATGTAGGTCTGCTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Sirt7	FBgn0039631	FBtr0085364	2	1	1	60	3R	24883993	24884011	CAAGTACGCGTATTCTGGT		59	24884035	24884053	AATATTGAGATCCGCTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1951	FBgn0039623	FBtr0085342	1	1	1	104	3R	24855146	24855167	CGATTATAAGCCTCATCAAGGA		59	24855230	24855309	CGTCTTTGGGTTTATTGTCTC		59	NA	
Drosophila melanogaster	50	CG4951	FBgn0039563	FBtr0085265,FBtr0113298	3	2	2	137	3R	23778973	23778991	AACCAAGATCAAGAGCGAG		59	23778796	23778872	GATCTGGAATTCTGCTGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG12428	FBgn0039543	FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236	3	5	5	150	3R	23529755	23529773	ATCCGATGTACACCAAGAG		58	23529567	23529642	TTAATGAACACAGCTTCCGA		59	NA	
Drosophila melanogaster	50	Gr98c	FBgn0046886	FBtr0085187	2	1	1	92	3R	23371393	23371462	GTTATTTGGAGGGATGCTG		58	23371518	23371536	TGTCTGTAGCCGATTAGAG		58	NA	
Drosophila melanogaster	50	CG13652	FBgn0039284	FBtr0084781	2	1	1	95	3R	20986659	20986677	GTCATCTCCTAGTCGTTGG		59	20986736	20986754	CACTGGACATTAGAGAACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11820	FBgn0039270	FBtr0084765	2	1	1	64	3R	20891643	20891661	GACTTGTGACCAAACAGTC		58	20891744	20891767	CTCGGCTATAATCTCTTCTATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11790	FBgn0039265	FBtr0084760,FBtr0084761	1	2	2	89	3R	20874456	20874474	TGAGAAGGGATATACCCAG		57	20875008	20875026	AAATAACTTTGCAGTGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6422	FBgn0039261	FBtr0113281,FBtr0084795,FBtr0084794	2	3	3	94	3R	20864033	20864153	TGAAGTCTCTGGCAATGAC		59	20863957	20863978	CCTTGTTCATATTGTTCCATGG		59	NA	
Drosophila melanogaster	50	CG13624	FBgn0039209	FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795	1	6	6	107	3R	20386540	20386627	CATTAAGGTGTACAAGCACAG		59	20386453	20386471	CTTAGCTTGTCCAGTTCCT		58	NA	
Drosophila melanogaster	50	CG13618	FBgn0039203	FBtr0084643	2	1	1	78	3R	20352352	20352370	GAACTTCGACAAATGCCTG		59	20352473	20352492	GATGCCAAATTCCCTATTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Myo95E	FBgn0039157	FBtr0100517,FBtr0100518,FBtr0100519,FBtr0100520	1	4	7	115	3R	19985037	19985205	TACCCATTACCCGTATAACG		58	19984883	19984901	ATTTCGATACAGCTTGAGC		57	NA	
Drosophila melanogaster	50	CG31139	FBgn0051139	FBtr0084321	1	1	1	60	3R	18573541	18573559	AATACGCAAAGTTGCTCAC		59	18573499	18573517	TTGGATACCTCCAGAAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6969	FBgn0039005	FBtr0084303	2	1	1	106	3R	18523289	18523367	TTCACCAAAGCTCAATTGG		58	18523437	18523455	AGTCTCTGCATAACATGCT		58	NA	
Drosophila melanogaster	50	CG5315	FBgn0038984	FBtr0084283,FBtr0084284,FBtr0084282	2	3	3	83	3R	18370411	18370492	CTAATTCTGATGGGCCTCC		59	18370346	18370364	AAACTTTCCAGGGAACCAG		59	NA	
Drosophila melanogaster	50	sar1	FBgn0038947	FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208	2	5	5	60	3R	18184317	18184335	TTCACTACATTCGACTTGG		57	18185255	18185273	GGAAGTAGTCCTTCCAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	how	FBgn0017397	FBtr0084178,FBtr0084177,FBtr0100514	3	3	3	230	3R	17869092	17888455	CTGGACGAAGAAATTGCAC		59	17894901	17894919	TCGGACCATAATCTTGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	3	22	22	87	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202451	17202547	TTGTTCAGGAATACGATAGC		57	NA	
Drosophila melanogaster	50	AP-2sigma	FBgn0043012	FBtr0084103	3	1	1	158	3R	17095550	17095570	CCAAGTGGTATATGAACTTCG		58	17095352	17095370	AGATGCAGAAGTACAGACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	H	FBgn0001169	FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917	2	4	4	171	3R	16452162	16452180	AGTACCGACCAAATGTCTG		59	16452313	16452499	ACAGATTCAGTGGTAAGTCTG		59	NA	
Drosophila melanogaster	50	CG5191	FBgn0038803	FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905	2	5	5	89	3R	16396362	16396821	ATGTCGACAGGTAAATCCTC		59	16396873	16396891	ATCACGTTGTCTATCTCCC		58	NA	
Drosophila melanogaster	50	cic	FBgn0028386	FBtr0083872	1	1	2	143	3R	16122208	16124110	CACAGATCTTAGAGCTGCC		59	16124217	16124235	AACATCTTCTGACTGGCTG		59	NA	
Drosophila melanogaster	50	CG5060	FBgn0038780	FBtr0113251,FBtr0083871	1	2	2	159	3R	16116160	16116178	AAGAAGTACAACGGGAAGC		59	16116301	16116697	TTGATCGACTGTCACTGAG		59	NA	
Drosophila melanogaster	50	CG4854	FBgn0038766	FBtr0083830	3	1	1	85	3R	15854485	15854503	ACAATGTCTACTCAGAGCG		59	15854552	15854635	GTGACAGATTTCGCATTCG		59	NA	
Drosophila melanogaster	50	CG7720	FBgn0038652	FBtr0083678,FBtr0083679	1	2	2	82	3R	14594437	14594455	ATCGTTTGCTTCATGTTCG		59	14587720	14594391	CTCTTGAACCTGAGATCGA		58	NA	
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083651,FBtr0083649,FBtr0083643,FBtr0083652,FBtr0083648,FBtr0083642	2	6	13	84	3R	14256555	14256573	CCAGACGGACAATATCGAC		59	14252824	14252843	ATGATTTCGATCCAGTTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rpb4	FBgn0053520	FBtr0100273,FBtr0083604,FBtr0100275,FBtr0100274,FBtr0083603	3	5	5	84	3R	14079003	14079021	AGGAGACCATAATGTCTGC		58	14078875	14078893	GGACACAAATTACCCAGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7156	FBgn0038588	FBtr0083607	2	1	2	135	3R	14067507	14067525	ACAAGAGTCTCCAACTACC		58	14067313	14067331	ATAGCTTCTTAAGTGGCGA		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Ssdp	FBgn0011481	FBtr0083612,FBtr0083611,FBtr0083613	2	3	3	74	3R	14020966	14020984	GCCATTCTGAAGATCAAGG		58	14020910	14020928	GTAGTCCGGATGATCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5285	FBgn0038490	FBtr0083409	1	1	1	60	3R	12976512	12976530	CAAGTTAAATGAGGCGCTG		59	12976554	12976572	GTTGTAGATGAACGGTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31269	FBgn0051269	FBtr0113401	1	1	1	60	3R	12953381	12953401	CTATACCTTCAGTACGTTCCC		59	12953423	12953441	AATCTTCATCGTTGCTCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cher	FBgn0014141	FBtr0089471	3	1	4	114	3R	12932759	12932778	ACTACGATGACTTATGGTGG		58	12931524	12932682	TCATGATCACACTTGGCTC		59	NA	
Drosophila melanogaster	50	CG31275	FBgn0063261	FBtr0083346,FBtr0083345	1	2	2	60	3R	12576907	12576925	CTATTGGGTATGTGGTGTC		57	12576865	12576883	TTATCGAAGGATGTTTCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14892	FBgn0038447	FBtr0083327	3	1	1	172	3R	12421705	12421787	GTTCACAACGATCTCTTTAACC		59	12421919	12421938	TTTGAAAGCTTCATCAGCAC		59	NA	
Drosophila melanogaster	50	CG14880	FBgn0038422	FBtr0083321,FBtr0083320	2	2	2	129	3R	12187839	12187915	AATCTCCTAATTGGTCAGCG		59	12187729	12187747	ATTGGCTTCTGAAGGACTC		59	NA	
Drosophila melanogaster	50	Zip3	FBgn0038412	FBtr0083266	2	1	1	67	3R	12132588	12132606	GCAACAAGCTAATGGACAC		59	12132637	12132655	CGATTACTGGTAGATGGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL9	FBgn0038319	FBtr0083084	1	1	1	61	3R	11157206	11157224	CTTACGTACTCGAGCACTG		59	11157249	11157267	TTCGGGTGAACATACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsc70-4	FBgn0001219	FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056	1	6	6	61	3R	11071531	11071549	GGTATCCTCAACGTGACTG		59	11071571	11071592	GTAATGGTGATCTTGTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	foxo	FBgn0038197	FBtr0082885	1	1	3	160	3R	9893473	9894124	TTTACATCGCAGCATACCA		59	9894248	9895159	GGAAGAAGCTGAAATTCGC		59	NA	
Drosophila melanogaster	50	primo-1	FBgn0040077	FBtr0091749,FBtr0091747	1	2	3	104	3R	9536371	9536453	TTTGTTTGGGCAACATCTG		59	9536285	9536303	CAATTGCTGCACTATCGAC		59	NA	Nonspecific
Drosophila melanogaster	50	Adgf-C	FBgn0038173	FBtr0082821	1	1	1	167	3R	9534286	9534359	AGAGACCAATTGGTTTGGT		59	9534490	9534508	ACCTGATTCGAAATGGGAC		59	NA	
Drosophila melanogaster	50	Act87E	FBgn0000046	FBtr0082786,FBtr0082785	1	2	2	60	3R	9252473	9252492	CAGAAGGACTCCTATGTTGG		59	9252515	9252533	ATTTCAGGGTGAGGATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8795	FBgn0038139	FBtr0100149,FBtr0082774,FBtr0082773	3	3	3	132	3R	9157366	9157631	TTGTTATGCTCAGGAATGC		58	9157252	9157270	TAATGGTTAGAACTGTCGC		57	NA	
Drosophila melanogaster	50	sim	FBgn0004666	FBtr0082711,FBtr0082710	3	2	2	92	3R	8900715	8900807	TCCGGATTTAAGGTGATACAC		59	8900861	8900879	GAGATTCTGGATGAGGCTG		59	NA	
Drosophila melanogaster	50	CG5724	FBgn0038082	FBtr0082657	3	1	1	60	3R	8565633	8565653	CAAATGAGTGATACCATTGGC		59	8565674	8565693	TGGATAGGATCATGTTGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10096	FBgn0038032	FBtr0082603,FBtr0082604	1	2	2	95	3R	8217634	8217652	TACGTATACCAAGGCTCTG		58	8217502	8217575	TAGCTGGCAATTATGACAC		57	NA	Nonspecific
Drosophila melanogaster	50	Taf12	FBgn0011290	FBtr0082440,FBtr0082441	1	2	3	73	3R	7504709	7504727	TATCTGGTGGTAGCAAGTC		58	7504583	7504672	TTTGGTAAGCATGGGAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082453,FBtr0082454	1	2	6	108	3R	7418337	7419052	ATTTCATTGGTGATGCACC		58	7418247	7418265	CTCTTCATGTGGTTCTTGC		58	NA	
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082455,FBtr0082453,FBtr0082456,FBtr0082454,FBtr0082452	2	5	6	157	3R	7419367	7419385	GCCGAGAAAGATAATGGAG		57	7418220	7418238	TCTGTGTTCTGACCAAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5276	FBgn0037900	FBtr0082390	1	1	1	60	3R	7257825	7257843	TTAACTATCACTTCGCCCT		57	7257866	7257885	AAGTAGAAGAGTAGGACGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL40	FBgn0037892	FBtr0082384	2	1	1	165	3R	7234212	7234230	ACTTTCAGATCATCGACCG		59	7234358	7234377	CTGACGTAATCCTTAATGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Adk3	FBgn0042094	FBtr0082331,FBtr0082330	2	2	2	66	3R	6713944	6713962	TGATCTGCAAGAACCATGG		59	6713896	6713914	TTTATGATGTTCTGGCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cap-H2	FBgn0037831	FBtr0082273,FBtr0082270,FBtr0082272,FBtr0082271	3	4	4	118	3R	6589992	6590011	TGAGCTATCCTATTCTGCTG		58	6590092	6590179	CTTAATAGGAAGGCGTGCT		59	NA	
Drosophila melanogaster	50	mthl11	FBgn0045443	FBtr0082247	1	1	1	136	3R	6227924	6227942	ATTATCGTGTGGAGCTCTG		59	6228039	6228119	GACCATCCATTGGTAAATATCC		58	NA	
Drosophila melanogaster	50	CG11870	FBgn0037804	FBtr0090031,FBtr0090030,FBtr0090033,FBtr0090032	3	4	4	100	3R	6117481	6117566	CCACATCTACGAAGTATTTGAG		58	6117627	6117645	GAACCTTCCTTTCAGACAG		57	NA	
Drosophila melanogaster	50	CG3999	FBgn0037801	FBtr0082225	1	1	1	89	3R	6077679	6077900	CAAACCTCTGAATGAGCAC		58	6077953	6077971	TAACCCATTCCGATGTAGG		58	NA	
Drosophila melanogaster	50	Fancl	FBgn0037781	FBtr0082203	1	1	1	60	3R	5877990	5878008	TTCTCTTGCTTGATCACAG		57	5877948	5877966	CTCTTGGTCAGCATTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16790	FBgn0037713	FBtr0082112	2	1	1	91	3R	5395399	5395417	GATGAATTCTCCCGATCCT		58	5395265	5395283	TCCTCATTCGTGTAGATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	betaTub85D	FBgn0003889	FBtr0082046	1	1	1	61	3R	5234624	5234642	CAGAGGTCTCAAGATGTCG		59	5234581	5234599	TGAATAGCTCCTGAATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8129	FBgn0037684	FBtr0082026	1	1	2	143	3R	5191538	5192111	TATACAGGCAGCTTCAAGG		59	5192216	5192236	TGGTATATTGAGTTTCCAGCC		59	NA	
Drosophila melanogaster	50	CG11984	FBgn0037655	FBtr0082008,FBtr0082009,FBtr0082007	3	3	3	165	3R	4837857	4837875	CATTGCGGAACTGTTATCG		59	4837615	4837633	CGATGTTGAGACTATGGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11776	FBgn0037631	FBtr0081935	2	1	1	82	3R	4622476	4622494	TCCAAAGACTGACTAACGA		57	4619075	4622433	CTTTATTTCCTCTAACTGGGTC		58	NA	
Drosophila melanogaster	50	CG9626	FBgn0037565	FBtr0081864	2	1	1	82	3R	4123030	4123109	GCACGAGAAAGAGAAATTGTC		59	4122968	4122986	CATCCGAAGTCTTGACCTC		59	NA	
Drosophila melanogaster	50	CG2747	FBgn0037541	FBtr0081818,FBtr0081817	1	2	2	96	3R	3848206	3848353	CCATTGAGGATCAGATGGAG		59	3847622	3847640	CATGGATCGTGCTCTAAGG		59	NA	
Drosophila melanogaster	50	CG10053	FBgn0037490	FBtr0081576	3	1	1	62	3R	3073640	3073658	AGATGAATCACAGAGCGAC		59	3073683	3073702	TATGGTTCTTGCTTAGGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	zen2	FBgn0004054	FBtr0081671	2	1	1	60	3R	2569596	2569616	GTCTTCGGAGAAATCAAAGAG		58	2569556	2569577	TAGTTCGATTAGCTGAAGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf1	FBgn0010355	FBtr0081686,FBtr0081685	3	2	3	172	3R	2479836	2480202	GGATGAAGATCTCCAATGC		57	2480338	2480356	CTGTCTTGATGTTCTTGGG		58	NA	
Drosophila melanogaster	50	CG15185	FBgn0037449	FBtr0081675	2	1	1	60	3R	2353722	2353743	GATACTATTAGCCATTCACCTG		58	2353763	2353782	TGTGATAACAGATTACGCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Neurochondrin	FBgn0037447	FBtr0081729	2	1	1	60	3R	2295081	2295099	TAATTCTCTGGAGGGTCAG		57	2295123	2295141	CAGAATATCTCCACAGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9727	FBgn0037445	FBtr0081730	1	1	1	112	3R	2280733	2280751	CATTAATTGGGTGCGTTCC		59	2280427	2280445	ACAGAGGTTTGATGCTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31559	FBgn0051559	FBtr0078616	3	1	1	70	3R	1982425	1982443	GTATGTGGTACAGTTCTCG		57	1982373	1982391	GTTTCTCCGGAATCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1193	FBgn0037375	FBtr0078628,FBtr0078627	3	2	2	192	3R	1611777	1611992	GACAATACTCCAGGAAGCA		58	1612148	1612166	GTATTTCGAGGTCAGGGTC		59	NA	
Drosophila melanogaster	50	Rga	FBgn0017550	FBtr0078742	2	1	2	173	3R	1435513	1435532	GAATAACTTCCACGTGTTCG		59	1434729	1435377	TTCACCATGCCAACATAGG		59	NA	
Drosophila melanogaster	50	Nmdar1	FBgn0010399	FBtr0078763	2	1	1	91	3R	1341850	1341941	CAATAAAGCACCTCAACTTCG		59	1341779	1341798	CTTGATGGGATTCTTGTCCA		59	NA	
Drosophila melanogaster	50	CG12590	FBgn0037294	FBtr0078773	3	1	1	63	3R	985904	985922	GTTCGATCTCCAAGGACTC		59	985949	985967	GTGGGAAAGATTCATGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34357	FBgn0085386	FBtr0112567	2	1	2	80	3R	321845	322206	CTTCAACTCCGTGTATGAG		57	321783	321802	AGCATTTGGAACATAGTGTC		58	NA	
Drosophila melanogaster	50	CG40044	FBgn0058044	FBtr0111164	1	1	1	80	3L	24003293	24003312	GTCTGCTACCTTCTATTCAC		57	24003355	24003663	ACACCATAAAGGTTAACGC		58	NA	
Drosophila melanogaster	50	CG33769	FBgn0053769	FBtr0091770	3	1	1	60	3L	22641442	22641460	CTGTCCCATAAGAGAAGGA		57	22641484	22641502	CACATTGTTCGCATCTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12972	FBgn0037076	FBtr0078403	3	1	1	60	3L	21338399	21338417	TCAGATTAACGCTGGAACC		59	21338357	21338375	GATAATGGCTAGATGCGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12977	FBgn0037052	FBtr0078321	3	1	1	168	3L	21178403	21178422	CAACATCTGGAAAGAATCGC		59	21178102	21178273	GGTAAAGGTTTGATGTCCCT		59	NA	
Drosophila melanogaster	50	CG6020	FBgn0037001	FBtr0078201	2	1	1	207	3L	20489430	20489448	GATATCTACGGATCCGAGG		58	20489619	20489705	GATAGCGTTTAGGTCCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Las	FBgn0029158	FBtr0078229,FBtr0078228	1	2	2	145	3L	20424694	20424925	CGATTATGCTTATGGGCGA		59	20424567	20424588	CAGAACAATGTAATCCAATCCC		59	NA	
Drosophila melanogaster	50	CG33969	FBgn0053969	FBtr0100010,FBtr0100011	3	2	2	70	3L	20385772	20385790	CTATACACTGACAACGGTC		57	20385569	20385587	CTAAACACCAATTCCTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6933	FBgn0036952	FBtr0074855,FBtr0074854,FBtr0074853	1	3	3	60	3L	20211887	20211905	GTACCCATAACCGATGTGG		59	20211845	20211863	TTCTTGCAACCCTCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17732	FBgn0036923	FBtr0074898	1	1	1	60	3L	19976272	19976291	AATCAGCTATTCCACAAGCA		59	19976314	19976332	AATGATGTTGCAGGTATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9372	FBgn0036891	FBtr0074945	2	1	1	134	3L	19600800	19600818	TTCAACACCTACATCTGGC		59	19600916	19601111	CAGGTTAACCTCCATGAGG		59	NA	
Drosophila melanogaster	50	CG9279	FBgn0036882	FBtr0074976,FBtr0074975	2	2	2	80	3L	19535272	19535407	GCTTCCAAAGAATCCAGTG		58	19535210	19535229	GGAGACAAGGTTACTTCTCC		59	NA	
Drosophila melanogaster	50	Cpr76Bb	FBgn0036879	FBtr0074933	1	1	1	107	3L	19513048	19513066	AGTACCAATTCGACTACGG		58	19513137	19513155	ATTCCTTGAGGGAGTAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9449	FBgn0036875	FBtr0074980,FBtr0110902	1	2	2	75	3L	19487943	19487964	GTAAATGAGACCTACTATCCCT		58	19487491	19487509	TACCAATGTTGAACAGCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	fz2	FBgn0016797	FBtr0112890,FBtr0075029,FBtr0075028	1	3	3	60	3L	19138170	19138189	CTGCTTACCTACTTCTTTGG		57	19138129	19138147	AGGTGAAACTGAGGATCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4893	FBgn0036616	FBtr0075425	1	1	1	149	3L	16348814	16348832	AAATTCCTGGACGATCTGG		59	16348417	16348435	GTACTTGCTCGTATCCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17027	FBgn0036553	FBtr0075516	2	1	1	60	3L	15974455	15974473	TGAAGCCGGATCTAATCTG		58	15974497	15974515	AGAAGGTCTTCGATCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dbo	FBgn0040230	FBtr0075505	2	1	1	161	3L	15822963	15823119	GCGATATGATCCCAGACAC		59	15823244	15823262	TTGGTCAGTGGATTGTAGC		59	NA	
Drosophila melanogaster	50	CG6151	FBgn0036533	FBtr0075541	1	1	3	239	3L	15806620	15806638	AGGATTTGTGGTGATGCTC		59	15805986	15806352	TCTCGAGAAGCTTTCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	yellow-k	FBgn0036504	FBtr0075556	2	1	1	60	3L	15514410	15514430	GATCTATACAGTACGGTGGAC		59	15514452	15514470	GTTTGCTTGCTAATTCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7255	FBgn0036493	FBtr0110881,FBtr0100360	1	2	3	131	3L	15301821	15301841	TTTAGAGTTCCCTTTGTACCG		59	15301932	15302037	AAGAAATACGGGTATACCCAC		59	NA	
Drosophila melanogaster	50	CG10006	FBgn0036461	FBtr0075628,FBtr0113171	1	2	2	84	3L	14989470	14989489	GATAATGGAGTTTGCAAGCA		58	14989536	14989611	CATAGATCCAAGCGTACCA		58	NA	
Drosophila melanogaster	50	Trl	FBgn0013263	FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704	2	8	9	236	3L	14747639	14750011	TGCTAAAGAATACACCATGC		58	14747422	14747440	GTTGTGGAATCATGTGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9628	FBgn0036433	FBtr0075678,FBtr0075677	3	2	2	81	3L	14620523	14620542	TTTGCTATGTGACCTTTGGA		59	14620586	14620664	CATGGAGTCAAATCACCGA		59	NA	
Drosophila melanogaster	50	CG13479	FBgn0040811	FBtr0075721	1	1	1	149	3L	14561013	14561031	GAATATCCCACAGCAGGAG		59	14560882	14560900	TACAGAACCTTCTGCACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fbp1	FBgn0000639	FBtr0075749,FBtr0075750	1	2	2	60	3L	14088468	14088486	CTTCACCATTGACATGGAC		58	14088426	14088447	GAAGATGCGAATAATAGCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32132	FBgn0052132	FBtr0075800	2	1	1	105	3L	13865704	13865722	CAATACCGCTAACGAAAGC		59	13865617	13865635	GGTTGATGATTGCTGAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10725	FBgn0036362	FBtr0089323	3	1	1	104	3L	13431284	13431361	GTGCATGAATGAGATAGCTG		58	13431427	13431446	GATCCAATACACTCGACCTC		59	NA	
Drosophila melanogaster	50	CG10713	FBgn0036360	FBtr0075855	2	1	1	148	3L	13423597	13423615	AGGATCGCACTACAATCAC		59	13423467	13423485	GATGGTGGTAGCTGTAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12520	FBgn0036324	FBtr0113169	3	1	1	60	3L	12894791	12894809	CTGCCAAATCTCAGTTGAC		58	12894749	12894769	GTCTCCTGCATAGTAAGACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10948	FBgn0036317	FBtr0075939,FBtr0075938	2	2	3	108	3L	12842192	12842272	CAACTCTTAATGCGGATGG		58	12842102	12842120	CTTATTGTGGGAGGAGGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10632	FBgn0036302	FBtr0114611	2	1	4	113	3L	12533237	12533498	ATGTCTACAAGGCCAATCG		59	12533142	12533160	ACTTTGCATACTCACTGCT		59	NA	
Drosophila melanogaster	50	CG17824	FBgn0036234	FBtr0076046	3	1	1	60	3L	11975952	11975971	CAATAACCAACATGTGCCTC		59	11975991	11976012	CATTAGATAACCATGTTTGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11714	FBgn0036170	FBtr0076156	2	1	1	60	3L	11513424	11513442	TATTCAATGCCACCAAGTG		57	11513301	11513400	AGCACAACATATCTGGCTC		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	Mnf	FBgn0036134	FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228	3	5	5	145	3L	11108508	11108591	CAGTACAGTAGTGGCAGTC		59	11108381	11108399	ACATGGTTCCTCTTTAGCG		59	NA	
Drosophila melanogaster	50	CG32075	FBgn0052075	FBtr0076240	1	1	1	65	3L	11055918	11056017	GGAAATTAGACAAGCATACCG		59	11055873	11055891	TTTATTGAGCCCAAGGGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385	2	8	8	112	3L	9825956	9826035	GAGTTAACCGGGACTACAC		59	9826111	9826129	TCTTTCCCAAACTTAGCCG		59	NA	InUTR
Drosophila melanogaster	50	Ilp2	FBgn0036046	FBtr0076329	1	1	1	72	3L	9793167	9793185	TAACTCGATATCGGAACCG		58	9793221	9793239	CAGGGAATTGAGTACACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14168	FBgn0036044	FBtr0076374	2	1	1	151	3L	9786747	9786765	AGAATCTCTACTTGCCCGA		59	9786487	9786632	CTTTGGGAAGATCCCAAGG		59	NA	
Drosophila melanogaster	50	CG18177	FBgn0036039	FBtr0089410,FBtr0089411	2	2	3	139	3L	9721701	9721819	CCCTGGACTTTATTAGATCAC		57	9721919	9721938	ATAAAGTTGAAGCGAGTGAG		57	NA	
Drosophila melanogaster	50	Clk	FBgn0023076	FBtr0100132,FBtr0076785	3	2	3	173	3L	7761742	7761819	AATCATAATGAGGCCACCG		59	7761587	7761606	GGAGGTAATACTTTCCGAGG		59	NA	
Drosophila melanogaster	50	CG7492	FBgn0035807	FBtr0076821	2	1	1	206	3L	7646733	7646752	TACTTAGTGAACTGCAGTCG		59	7646486	7646564	AAGAATGTACTTCACCCGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG33276	FBgn0053276	FBtr0114530	2	1	1	61	3L	7633380	7633398	TGAATTGAACTTGGACGGT		59	7633274	7633292	CATGCATCCACTTAAGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7526	FBgn0035798	FBtr0076799,FBtr0076800	2	2	2	93	3L	7562064	7562181	ATATACGTCAGATCTGCCA		57	7562238	7562256	TTTGTGAAACATCGGAGAG		57	NA	
Drosophila melanogaster	50	melt	FBgn0023001	FBtr0076917	1	1	2	123	3L	7134588	7134606	CAGATTATGCGTGATCCTG		58	7134693	7134817	CATTGGAAACCTCAATGCT		58	NA	
Drosophila melanogaster	50	CG14821	FBgn0035719	FBtr0076895,FBtr0113150	2	2	2	97	3L	6939460	6939480	AGCTAAGCAATAAGGACATCC		59	6939538	6939610	TGATATTTCCTGGCTTTGCA		59	NA	
Drosophila melanogaster	50	SP1173	FBgn0035710	FBtr0076960,FBtr0076961,FBtr0076959,FBtr0076958	3	4	4	144	3L	6683603	6683621	CATCATGGAGACCATCGAG		59	6683417	6683495	AAAGCCTTTGCCTAATCCA		59	NA	
Drosophila melanogaster	50	Cpr65Ay	FBgn0085300	FBtr0112466	2	1	1	60	3L	6151439	6151513	TCATTTCGGATTTCACACC		58	6151397	6151415	TACTGTGTACGTTATGGCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Tektin-C	FBgn0035638	FBtr0077115,FBtr0113147	1	2	2	68	3L	5788652	5788670	AGGATTTGTCCAAACAGCA		59	5788197	5788215	CCAGATTCTCGTACGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	lama	FBgn0016031	FBtr0077161,FBtr0077160,FBtr0077159	2	3	3	96	3L	5338825	5338843	GAACTTATCCGGATTGGGT		59	5338687	5338766	GAAATGGTATTGGACCACTG		58	NA	
Drosophila melanogaster	50	CG32241	FBgn0052241	FBtr0073330	3	1	1	60	3L	4465713	4465734	CAACCAAGAAGGTTATCTACAC		58	4465674	4465692	GTGTAGACAACCTTCTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12607	FBgn0035545	FBtr0073302	2	1	1	83	3L	4447578	4447907	TCCAGTCTATAACGAAACCA		58	4447953	4447971	GTCTCTTTGTACTTCGCTC		57	NA	InUTR
Drosophila melanogaster	50	CG11347	FBgn0035542	FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141	3	6	6	227	3L	4419446	4419464	GTATTAGGTCCACCCAGGA		59	4419654	4419749	TGTTCTTGCTCTTCTGACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1311	FBgn0035523	FBtr0073232	1	1	1	80	3L	4279327	4279402	GGATTAGCTTTGCTCATTTCC		59	4279444	4279462	AACACAGATGATCCAGGAG		58	NA	
Drosophila melanogaster	50	CG10853	FBgn0035478	FBtr0073164	1	1	1	212	3L	3948141	3948159	TATCCCAAAGAAGGAGGTG		58	3948487	3948505	ATTTAAAGTGAGCAGGCAG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Aats-pro	FBgn0027082	FBtr0072948	3	1	1	70	3L	2650953	2651029	TTTCGTTAAGGTGAATGCC		58	2650901	2650922	GCGATACATAATGGTATTCGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	msn	FBgn0010909	FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956	1	5	5	102	3L	2556720	2556800	GCAATAGAGATACGTTCCG		57	2556636	2556654	ATACTTTGTCGTTTCGCTC		58	NA	
Drosophila melanogaster	50	CG15877	FBgn0035337	FBtr0072899	2	1	1	60	3L	2377281	2377300	GTAGATCAACAGGAGGTTCC		59	2377185	2377204	CTTCTGATTCTTTATGCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9004	FBgn0035336	FBtr0072890	3	1	1	60	3L	2375435	2375453	CCCACTGGAACTGAAAGAG		59	2375474	2375495	GACTGCATTTAGAATATCGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cue	FBgn0011204	FBtr0072706	2	1	1	194	3L	1504151	1504169	ATCGTTCAAGGAATCCGTC		59	1503917	1503993	ATCGAAACAGGGAGTTTCG		59	NA	
Drosophila melanogaster	50	CG16971	FBgn0035114	FBtr0072497	3	1	3	154	3L	225744	225763	TTAATGGCAACGATGATGAG		58	226794	226812	CATTTATACATGCCCGCAG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Mkp	FBgn0083992	FBtr0110977	3	1	2	70	3L	183758	183777	GATCGTTGTTACTTTCTGCA		58	183652	183670	ATAAACATTCGAGCTGCAG		58	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	snoRNA:Psi28S-1153	FBgn0083006	FBtr0113500	1	1	1	64	2R	9445129	9445148	CACAGTTATGCAATAAACGC		58	9445084	9445102	CAGATGTTAGTCAACACGT		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6a15Psi	FBgn0033303	FBtr0088689	3	1	1	60	2R	4457403	4457424	GGAACTTCATTACTGATACCTG		58	4457444	4457463	GATGTGGATATAAGTGCGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	emp	FBgn0010435	FBtr0072400,FBtr0072402,FBtr0072401	1	3	3	88	2R	20865282	20865300	GACAACATGTGCTTCTGTC		59	20865154	20865230	ATGGGAGAGTCGTATTGAC		58	NA	
Drosophila melanogaster	50	CG30427	FBgn0043792	FBtr0072413	1	1	4	81	2R	20817347	20817365	GTGATACCTGTGGACATCG		59	20817231	20817303	TCTGAAGAGGTCTCTTCTCC		59	NA	
Drosophila melanogaster	50	Mov34	FBgn0002787	FBtr0072290	3	1	1	60	2R	20291457	20291475	CCACCAGATTGTCTACCAG		59	20291498	20291517	GTCATTGGTTATATCGGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	or	FBgn0003008	FBtr0072152	1	1	1	88	2R	19856024	19856100	CCTCTCAGAACTGGTAATGG		59	19856151	19856169	TGACGATCTTGTTCTGCTC		59	NA	
Drosophila melanogaster	50	fzr2	FBgn0034937	FBtr0072146	1	1	1	60	2R	19838563	19838581	CTCAGCATCTTCAAGAGAC		57	19838605	19838623	CATCGAGTATCTTGTACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5549	FBgn0034911	FBtr0072125	2	1	1	91	2R	19722050	19722068	GATATTCTTCGCACTGAGC		58	19722122	19722230	AAGTTCCACAATTGTAGCAG		58	NA	
Drosophila melanogaster	50	l(2)efl	FBgn0011296	FBtr0072100	2	1	2	260	2R	19572571	19572589	GAAAGCATGAGGAGAAGCA		59	19572267	19572285	AAAGGATTGAGTCCTAGGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG17664	FBgn0034883	FBtr0072107,FBtr0072108	3	2	2	66	2R	19491541	19491559	TATGAATCCAGTCCGATCC		58	19491493	19491511	GTAGATCCAGTGGTCATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k09913	FBgn0021979	FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961	3	4	4	100	2R	18958339	18958357	TGAGATGGGATTCGATGTG		59	18958497	18958515	GGAATCGAATAGTCTCGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3536	FBgn0034775	FBtr0071916	1	1	1	200	2R	18634397	18634416	GTATACTCAATATGGGCACC		57	18632233	18632560	AGTATTTGACTTTCTCCAGC		57	NA	Nonspecific
Drosophila melanogaster	50	CG4294	FBgn0034742	FBtr0071941	3	1	1	80	2R	18489310	18489461	TGACTACAGGTTAATCGACG		59	18489249	18489267	TTGTACAGGCGTATCTCCT		59	NA	
Drosophila melanogaster	50	CG3624	FBgn0034724	FBtr0071845	2	1	1	89	2R	18282134	18282152	AGGATGTGGTTCTCAAGTG		59	18282005	18282023	TGGAAATGACATTATCGCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6393	FBgn0034685	FBtr0071752,FBtr0071751,FBtr0071750	2	3	4	81	2R	17956169	17956254	GATAATTGAATTCCCAGCAGTG		59	17956296	17956314	GAAGGGAAGGATGTACTGG		59	NA	
Drosophila melanogaster	50	Sdc	FBgn0010415	FBtr0071706	2	1	3	129	2R	17286781	17286799	AAGATCCGGACTATTCTGG		58	17286079	17286689	GTATGAGCTGTGTTTATGCC		58	NA	
Drosophila melanogaster	50	CG30394	FBgn0050394	FBtr0071614,FBtr0071613	1	2	2	81	2R	17209253	17209328	CTATACAGAAAGGGTCATACG		57	17209192	17209211	AGACAACGATGAAGATAGTG		57	NA	
Drosophila melanogaster	50	CG33704	FBgn0053704	FBtr0091692	1	1	1	118	2R	16837769	16837787	TCTATATCCGAGGAACTGG		57	16838139	16838157	CTCAGTCGACTACCTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9236	FBgn0034558	FBtr0071516	3	1	1	107	2R	16768355	16768373	AATGCATTGAGAAGATGCC		58	16768568	16768586	CCAGAAAGTCCTCAAAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	bl	FBgn0015907	FBtr0086221,FBtr0086220	3	2	4	91	2R	16483146	16483164	TTCGCATACTGATTCCGAG		59	16483312	16485064	AGTGGCTTTATACTGAGTCC		58	NA	
Drosophila melanogaster	50	Ate1	FBgn0025720	FBtr0086318,FBtr0086317	3	2	3	90	2R	16144001	16144019	AACGAAATCCCTTACCCAG		59	16143529	16143947	AATTAAGCGCAGCTTTAGC		59	NA	
Drosophila melanogaster	50	ena	FBgn0000578	FBtr0086584	3	1	6	106	2R	15048913	15048988	TTCTCAAGCAGGTCAATGG		59	15049057	15049076	TTTCTGAATCTCCAATCGCA		59	NA	
Drosophila melanogaster	50	botv	FBgn0027535	FBtr0086579	3	1	1	132	2R	15017989	15018067	TAGAATCAAGAGCACCGTG		59	15018163	15018181	TTCTGTTTGCTCCCTAAGC		59	NA	
Drosophila melanogaster	50	CG15117	FBgn0034417	FBtr0086594,FBtr0100129,FBtr0086593	3	3	3	114	2R	15010499	15010518	TAACCCAGAATGTGATCGAC		59	15010305	15010422	TAAGCAGGTTGCATATGCA		59	NA	
Drosophila melanogaster	50	sano	FBgn0034408	FBtr0086567,FBtr0086569,FBtr0086566,FBtr0086568	1	4	4	270	2R	14844990	14845235	CACATCAGGTACAAGAGTC		57	14845469	14845487	TATTGCTACTGGAACTCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Gint3	FBgn0034372	FBtr0086656,FBtr0086654,FBtr0086655	3	3	3	106	2R	14546145	14546223	TATGACTGCAAACTCATTCC		57	14546058	14546076	AGCATTAGAAGGTCTTCCT		57	NA	
Drosophila melanogaster	50	CG30116	FBgn0028496	FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718	2	4	4	80	2R	14363162	14363624	GATTATCGCCTTATGAACGTG		59	14363102	14363120	CGATTGAAAGGCTTGTTCC		59	NA	
Drosophila melanogaster	50	Dp1	FBgn0027835	FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682	2	6	6	84	2R	14306395	14306413	GATCGATAAACGCATCCAC		58	14306458	14306564	GATGTTCACCTTATTATCCTCG		58	NA	
Drosophila melanogaster	50	Dp1	FBgn0027835	FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682	1	6	6	83	2R	14304949	14304967	CATCTCCTCGATCATGGAG		59	14305013	14305092	CGAATAGTGACCTTATCGCT		59	NA	
Drosophila melanogaster	50	imd	FBgn0013983	FBtr0086725	1	1	1	173	2R	14298396	14298414	ATGATGCAGTCACAAGAGG		59	14297824	14298260	CAGCTGGTATATCACCTCTC		59	NA	
Drosophila melanogaster	50	pen-2	FBgn0053198	FBtr0089842	3	1	1	72	2R	14165340	14165358	AGCAGAGCCAAATAAAGAG		57	14165467	14165486	GCAGTTAGTACTATCAGCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5033	FBgn0028744	FBtr0089551,FBtr0089550	1	2	2	80	2R	13679636	13679718	TGGTCTATAATGACCTGCTG		58	13679761	13679779	CAAACTCATCGCGTTTCTC		59	NA	
Drosophila melanogaster	50	CG6410	FBgn0034265	FBtr0086885	1	1	1	166	2R	13613099	13613117	AATTGAGCATCTGAAGCTG		58	13612892	13612910	TTATTCCCAAACTGTCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30460	FBgn0050460	FBtr0087011,FBtr0087012,FBtr0087009,FBtr0087010,FBtr0113378	1	5	5	109	2R	12955106	12955124	AGTTAAGCAGTCTCGATGG		59	12954944	12955033	ATAAGGTGAGTTGCTGCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG15609	FBgn0034180	FBtr0114626,FBtr0087019,FBtr0114627	3	3	6	112	2R	12900873	12900892	GGCTTTAGTGAAATTACGGA		57	12900270	12900798	AACGAAGGTACACTTTGAG		57	NA	
Drosophila melanogaster	50	Psi	FBgn0014870	FBtr0087073,FBtr0087072	1	2	3	169	2R	12752526	12752604	AGAATAAGCAGAACGGATCTG		59	12752377	12752396	ATACTGTGCATACTGAGTGG		59	NA	
Drosophila melanogaster	50	Menl-2	FBgn0029153	FBtr0100602	2	1	3	108	2R	12303123	12303199	CTGAGGTTAGATTGGGTCG		59	12303033	12303051	AAAGTCAGACAGTTGTTGG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Cdk5	FBgn0013762	FBtr0087350	1	1	1	131	2R	11457930	11457948	GATGAAGATCTTCCGTGTG		57	11457755	11457773	TTTAGCCTAGGTACCAGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34123	FBgn0083959	FBtr0114580,FBtr0114579,FBtr0110833,FBtr0113485	1	4	6	80	2R	11152374	11152395	AACGACTATATGATTCTGGAGG		59	11152254	11152333	TACACCAATCTCGAATCCC		58	NA	
Drosophila melanogaster	50	CG8547	FBgn0033919	FBtr0087566,FBtr0087567	3	2	2	245	2R	10149673	10149994	CAGTCATTCGGAACTACCA		58	10149387	10149405	CTCGTACTCGTACATTCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8547	FBgn0033919	FBtr0087566,FBtr0087567	1	2	2	244	2R	10149672	10149993	AGTCATTCGGAACTACCAC		58	10149387	10149405	CTCGTACTCGTACATTCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8485	FBgn0033915	FBtr0087572,FBtr0087570,FBtr0087571,FBtr0087569	2	4	4	91	2R	10126046	10126142	GTTCACAGGGATCTAAAGC		57	10125973	10125992	AAGAACTTGTTGCTAAACCC		58	NA	
Drosophila melanogaster	50	CG18568	FBgn0033888	FBtr0087608	2	1	1	62	2R	9859556	9859574	TAAGCTAATCCTTGGCGAG		59	9859512	9859530	TCTATTTGATCGACCAGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10814	FBgn0033830	FBtr0087720	3	1	1	76	2R	9264909	9264927	TATAGAGTGGTCCGATGGA		58	9264851	9264869	GATTCGCGTATGAGAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30053	FBgn0050053	FBtr0087873	2	1	1	60	2R	8576851	8576872	GTGATTATAACAGACACTGGAC		58	8576812	8576832	TCTCTATTTGCTCTAGGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Iswi	FBgn0011604	FBtr0087842,FBtr0087841,FBtr0087843	3	3	3	93	2R	8527487	8527566	GGCTATAAGAGCTTCTCCG		59	8527623	8527641	GGTAATCAACGTGTTGCAG		59	NA	
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930	1	5	6	105	2R	8335509	8335527	ATCATAACCTCAACAAGCG		57	8335595	8335676	GAGTTATCACTTGTGTACGC		58	NA	
Drosophila melanogaster	50	CG13167	FBgn0033706	FBtr0088000	1	1	1	60	2R	8145270	8145289	CTATACGAAGGCACTCAAGG		59	8145312	8145330	CATTCGCACTTGGTATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13168	FBgn0033705	FBtr0087998,FBtr0087999	2	2	2	97	2R	8142680	8142698	ATGACCAAGAAGCATCTGG		59	8142808	8142829	CTGGTATCGTACTTCTTAAGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34227	FBgn0085256	FBtr0112420	3	1	1	119	2R	7135646	7135664	TCTGTCGAGTCTGTATCAG		57	7135747	7135765	TTTCAGAATCATCCAAGGC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	dgo	FBgn0086898	FBtr0088250,FBtr0088249	3	2	2	174	2R	6705992	6706068	GATGTCCGGAATAATTATGGAG		58	6705839	6705857	GAATCCTTGTCAGCTTCCT		59	NA	
Drosophila melanogaster	50	dgo	FBgn0086898	FBtr0088250,FBtr0088249	1	2	2	104	2R	6705992	6706068	GATGTCCGGAATAATTATGGAG		58	6705909	6705927	TTTATTCGGATCGCAAAGG		58	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	1	26	26	80	2R	6421013	6421095	AGTCCCTACTTTGCTACCT		59	6420951	6420970	CTCTTGGTACTTGACATCCT		58	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	3	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421093	TAGTAAGGTAGCAAAGTAGGGA		59	NA	
Drosophila melanogaster	50	CG12909	FBgn0033507	FBtr0088348	3	1	1	66	2R	6198385	6198404	ACTAAGATCGTTACCAAGCA		58	6198433	6198451	TCTTGAGCAGCTTCTTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Not1	FBgn0085436	FBtr0112673	3	1	3	111	2R	5457801	5457820	GGAAACTTTAACTCGAGCAG		58	5457646	5457727	CATCTGTATCGCATGAGTG		58	NA	
Drosophila melanogaster	50	CG13953	FBgn0033416	FBtr0088510	2	1	1	60	2R	5346217	5346236	CAGATCTTCAGTCATCTGCA		59	5346257	5346277	AGGCGTCATACTTACTAACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdk	FBgn0017558	FBtr0112892,FBtr0088508	1	2	2	82	2R	5320552	5320638	GCAATCATCTATCTAAAGGCTC		58	5320679	5320699	CGATAGAACTTTGAGCTTGTC		59	NA	
Drosophila melanogaster	50	ltd	FBgn0002567	FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934	2	5	5	110	2R	5066194	5066212	ATGGATGAGTATGTGAGGG		58	5066041	5066123	GATGAGTATCTTATTCACGAGG		57	NA	
Drosophila melanogaster	50	CG8046	FBgn0033388	FBtr0088621,FBtr0088620	1	2	2	80	2R	5051521	5051597	GATCTTACAGGATGATTGCC		58	5051460	5051478	CGTATGCATAACCAGAACC		58	NA	
Drosophila melanogaster	50	Su(var)2-10	FBgn0003612	FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578	1	9	9	80	2R	5005945	5006020	TCATAGATGGCTACTTCCAG		58	5006060	5006081	CATCCTGATGAAGTTGAATCTC		58	NA	
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	3	9	9	95	2R	4568140	4568158	ATGAGCAGATCAAGACCTG		59	4568217	4568298	TATCACGGTAGTCCATGAC		58	NA	
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	1	9	9	90	2R	4568146	4568164	AGATCAAGACCTGCTTGTG		59	4568217	4568299	ATATCACGGTAGTCCATGAC		58	NA	
Drosophila melanogaster	50	mXr	FBgn0050361	FBtr0088755,FBtr0088754	2	2	3	117	2R	4373797	4374330	GAATCAAGGCTTTCGAGGA		59	4373698	4373717	ATATTGTCGTAGGCGATGTC		59	NA	
Drosophila melanogaster	50	CG2291	FBgn0033279	FBtr0088802	2	1	1	60	2R	4148559	4148578	TGAAGAAGATCGACGAAGTC		59	4148518	4148536	TGATGGTACTCTGGATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30372	FBgn0050372	FBtr0100140	3	1	1	81	2R	4006468	4006486	GACATTAAGACCAAGACGG		57	4006343	4006423	CGTCCTTAAAGTAGTTGCT		57	NA	
Drosophila melanogaster	50	CG11198	FBgn0033246	FBtr0088871,FBtr0113053,FBtr0088872	3	3	4	199	2R	3872618	3872636	AGCGAAACAAATGAGTCCA		59	3870501	3872392	GACATACTCGGCCTTAACC		59	NA	
Drosophila melanogaster	50	CG8728	FBgn0033235	FBtr0088882	1	1	1	81	2R	3825204	3825278	GGATTAGTAAAGGAACAATGCG		59	3825144	3825164	CAAATCCGAGAATTACATGGG		59	NA	
Drosophila melanogaster	50	CanB2	FBgn0015614	FBtr0088930	3	1	1	290	2R	3674032	3674744	ATGTGTTCCAATTTCGACG		58	3674998	3675016	AATGTAACCATCGTTGTCC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG2064	FBgn0033205	FBtr0088923	3	1	1	105	2R	3554127	3554201	GTACTGAAGAACTCGGCTC		59	3554270	3554288	CATCATACGACTTCTCGCT		59	NA	
Drosophila melanogaster	50	so	FBgn0003460	FBtr0088970	2	1	1	93	2R	3312437	3312455	AATACAAGGAGCTGTACCG		59	3312512	3312667	ACATAATGCGCTTTCAACC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111088	3	1	60	157	2R	3249225	3249243	AAGGACGATTGGTCATCAC		59	3236468	3242803	GAACTTGTACCATCTGAATGC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111097	2	1	60	90	2R	3233833	3233851	GACATGCTGGGAACTACTC		59	3219873	3233780	CATCTGGGAGGTACATTGAC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111075	3	1	60	80	2R	3245346	3245364	CTGCAAGTGAAGTTAGCAG		58	3236471	3245305	CTTGTACCATCTAACAATTGGC		59	NA	
Drosophila melanogaster	50	Tsp42Ej	FBgn0033132	FBtr0089030	2	1	1	81	2R	2929211	2929230	GGTGTCGTACAAGTATTCCA		59	2929328	2929346	GAAGGTGAAGAGGTAGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tsp42Ee	FBgn0029506	FBtr0086180	1	1	1	80	2R	2905067	2905086	TCGAATTAATGACCACTGGA		58	2905129	2905210	AGATAAAGCCGATCAGCTC		59	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086202,FBtr0086199	1	2	11	87	2R	2763927	2764040	AATTCACAGGACTCAACCG		59	2763858	2763877	CGAGTAACATTGTGGATTGG		58	NA	InUTR
Drosophila melanogaster	50	CG14464	FBgn0033000	FBtr0111283	1	1	2	67	2R	716971	716989	AATATTCGCTCAAACGGTC		58	717073	717091	TTATACCAGCAACCATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nipped-B	FBgn0026401	FBtr0111119,FBtr0111118	1	2	2	80	2R	609820	614138	TTTGACTCAGAGGATGTAGAC		58	609760	609778	CTTGGCAACATCAGTACTC		58	NA	
Drosophila melanogaster	50	CG41120	FBgn0069931	FBtr0111231	3	1	1	73	2L	22667743	22667761	ATGTTAGGAATTGCTGGTG		57	22667688	22667706	CGTAAGGCATTAATACCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3262	FBgn0032986	FBtr0085953,FBtr0085954	3	2	2	60	2L	22240692	22240711	TTCTCTTCCGTTAGACTCAC		58	22240733	22240752	TATTACAACAGGCACTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41434	FBgn0084001	FBtr0111262	2	1	1	60	2L	22038813	22038833	ATACCCTTACGTACTACTGGA		59	22038855	22038873	ATTCTTCTCTTGCGATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His2A:CG33862	FBgn0053862	FBtr0091866	1	1	1	60	2L	21533465	21533484	GAATTATTCCGCGTCATCTG		59	21533507	21533525	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33816	FBgn0053816	FBtr0091820	1	1	1	60	2L	21456565	21456584	GGTCAATGGAAAGCTTATCC		58	21456607	21456625	CGACAGTTTGAAAGATCCA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9259	FBgn0032913	FBtr0081464	2	1	1	60	2L	21090654	21090673	TGGTTATTCTACCACCTCAC		58	21090696	21090714	TCGTTAAAGCCATCCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10947	FBgn0032857	FBtr0081368,FBtr0081369,FBtr0081370	2	3	3	60	2L	20387005	20387024	GAGAACTGGTACAAATACCG		57	20386964	20386982	GGATGTTCACCGAGTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spi	FBgn0005672	FBtr0081271,FBtr0081269,FBtr0081268,FBtr0100597	1	4	7	208	2L	19571730	19571748	TACAGAAACGAGAAGAGCC		59	19569195	19569213	CGTAAACGTTGAGTTAGGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Aats-asn	FBgn0086443	FBtr0081162	3	1	1	60	2L	19130587	19130605	TGGATCGTGTTCTGAAGTC		59	19130545	19130564	TTGAAGTCAGGGTTAAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Phlpp	FBgn0032749	FBtr0081149	2	1	1	80	2L	19061892	19061972	TGTTAGAGCTCATTCTCAGC		59	19062012	19062033	GATCAATATCCATCACTGACCA		59	NA	
Drosophila melanogaster	50	CG10602	FBgn0032721	FBtr0089314,FBtr0089315,FBtr0089317,FBtr0089316	2	4	4	105	2L	18856840	18856925	CTAAGGGAAGCCTTAACGT		58	18856753	18856772	ATATAAGGATGCTCCTTGCC		59	NA	
Drosophila melanogaster	50	CG5693	FBgn0040989	FBtr0081026	1	1	1	255	2L	18006796	18006814	TTAATCCGGGCTACATTGG		59	18007033	18007051	CATCTCCAAAGGACTCCTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CadN2	FBgn0032655	FBtr0081012,FBtr0110886	1	2	2	80	2L	17789384	17789403	CACTGCAAATACCAATCAGC		59	17789245	17789343	TCATCACGGGATAGATTATGG		58	NA	
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976	3	4	6	107	2L	17394484	17400407	CTTATACAGATAACAGCAGCG		58	17400476	17400494	CAATGAAGGCAATCTGTCC		58	NA	
Drosophila melanogaster	50	Ca-alpha1D	FBgn0001991	FBtr0090003	2	1	4	124	2L	16185511	16185529	GGAGAGCTAAGGACATTCG		59	16185614	16189033	GTGCGTAGATCATAGTTAATGG		58	NA	
Drosophila melanogaster	50	BicC	FBgn0000182	FBtr0080805,FBtr0080804,FBtr0080803	1	3	3	156	2L	16045383	16045852	CAATGTTCAGGTCATATTCTCC		58	16046029	16046047	GACATTCACCAGGATTTGG		58	NA	
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0100611,FBtr0080709,FBtr0100610	3	3	7	109	2L	15261797	15261816	GAAATCTACGACGAATCCTC		57	15258928	15261726	AGTTGTCCGTTAATTTCCAC		58	NA	
Drosophila melanogaster	50	CG15278	FBgn0032554	FBtr0080683	1	1	1	65	2L	14875760	14875778	TAATTTGGCTCTCCTGGTG		59	14875654	14875672	TTCGACAAGAGAACCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15279	FBgn0028886	FBtr0080686,FBtr0080685	3	2	3	186	2L	14847047	14848681	GATGAAAGGTGTTGGAGCT		59	14846879	14846897	AGACCAATTACTCGCATCG		59	NA	
Drosophila melanogaster	50	CG33309	FBgn0053309	FBtr0100163	1	1	2	80	2L	14812301	14812320	GAAGTGAACCACTATAGGCA		59	14812362	14813398	ACCTATGTATATTCGCCGAG		58	NA	
Drosophila melanogaster	50	kuz	FBgn0015954	FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660	1	5	5	86	2L	13634172	13634250	ACCTACAGAGATTTCACTGG		58	13634298	13634317	GTACTTCTCGCAAATTCCAC		59	NA	
Drosophila melanogaster	50	B4	FBgn0023407	FBtr0080514	3	1	2	263	2L	13547145	13547754	CAGACGAAGTGTTAATCGAC		58	13535017	13546919	TCCATGCAGCCTTTAAGAG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	loqs	FBgn0032515	FBtr0080498,FBtr0100220	2	2	3	83	2L	13384720	13384740	CAGCACAGTAACAAAGTATCC		58	13384782	13384992	GCAAGTCTTCTGTAACTTAAGC		59	NA	InUTR
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090023,FBtr0090026,FBtr0090022,FBtr0090029,FBtr0090025,FBtr0090014,FBtr0090024	2	8	17	185	2L	12724032	12724051	CGTGTTAAGTTGATGAACGA		58	12724334	12724773	TAATGAAACCAGGAACGGT		58	NA	
Drosophila melanogaster	50	CG18789	FBgn0042127	FBtr0080315	1	1	1	60	2L	11994167	11994186	CCAGTCCTCAGTTTACAGTC		59	11994126	11994145	CTTGAATGCTTCGATTTCCT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6509	FBgn0032363	FBtr0080246,FBtr0080247	1	2	2	80	2L	11511227	11511245	TCAACGGTGTATGATGAGG		59	11510837	11511185	CACATACCTTAGAGTCTCTGC		59	NA	
Drosophila melanogaster	50	CG6181	FBgn0032340	FBtr0080232,FBtr0080231	1	2	2	80	2L	11100070	11100088	GCAAGTACTACTATCCGGG		58	11099746	11100027	TGTTGTTGACATTAATGGCG		59	NA	
Drosophila melanogaster	50	Ast-C	FBgn0032336	FBtr0080234	1	1	1	66	2L	11076956	11076974	TATTCCAATGGATCGGCTG		59	11076846	11076864	CAAATAGGCGCTGTAACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17085	FBgn0032309	FBtr0080141	3	1	1	176	2L	10851681	10851699	TATTGAGGTTAGTTCGCGG		59	10851839	10851857	AGAATCTGTATATGCCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18284	FBgn0043825	FBtr0080100	3	1	1	93	2L	10645231	10645250	CATCTGCACCAAACTTATCC		58	10645303	10645378	GGATAGTGTCATATTGAAGCTG		58	NA	
Drosophila melanogaster	50	CG7329	FBgn0032271	FBtr0080131	1	1	1	103	2L	10630166	10630184	TATGCGATTCTACTGGCAG		59	10630023	10630041	GTTTGATATTGCAGCCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4995	FBgn0032219	FBtr0079989,FBtr0079990	2	2	3	240	2L	10322827	10323681	ATGATAAGGATCCCTACCG		57	10323953	10323971	TCTCTTTGCACTATCGTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18619	FBgn0032202	FBtr0089738,FBtr0089735,FBtr0089737,FBtr0089736	2	4	4	199	2L	10264620	10264768	GAAAGCCAAACTAGAACGC		59	10264990	10265010	GAAGTAACTGGTCATTGTTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Ror	FBgn0010407	FBtr0079978	3	1	1	85	2L	10254249	10254267	ATGGAAAGTTTACGACCGA		58	10254316	10254393	GTAGTATGGCTGCATTCCA		59	NA	
Drosophila melanogaster	50	CG31714	FBgn0032180	FBtr0113032	2	1	1	135	2L	10068738	10068756	TCATCCTGCTCTTCTTTGC		59	10068341	10068641	TAGAGTAATCCAAATCGCCTG		59	NA	
Drosophila melanogaster	50	CG4389	FBgn0028479	FBtr0079859,FBtr0079857,FBtr0079858	1	3	3	81	2L	9575428	9575513	GGTAAACTTCGCGTAAATCG		59	9575366	9575384	TCTTCACAAAGTCGGTGTC		59	NA	
Drosophila melanogaster	50	Eaat1	FBgn0026439	FBtr0079802,FBtr0079801,FBtr0079800	2	3	3	147	2L	9338299	9338321	GAGATCATGTACATATCCTTCCC		59	9338514	9338598	AAGTAATGGCTCTGGTAGC		59	NA	
Drosophila melanogaster	50	aust	FBgn0032104	FBtr0079819	3	1	1	63	2L	9250862	9250880	CTACAAGCAAGAGGTGGAC		59	9250817	9250836	CAGTAGCTGCTTATCAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31886	FBgn0032079	FBtr0113029,FBtr0079787	2	2	2	60	2L	8955036	8955054	CCAGGATGTGCTAATGGAG		59	8954994	8955015	TGGAATATCCTCAGTCAAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9510	FBgn0032076	FBtr0100480,FBtr0100481	3	2	2	83	2L	8940309	8940327	CCTACAGACGATTCAGGTC		59	8940187	8940262	AGATAGTAGGCCCAGTCAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG9466	FBgn0032068	FBtr0079742	1	1	1	80	2L	8775078	8775160	CTGATCAAGTACGTCAACGA		59	8775017	8775035	GTTCAAGTAGCAAGTGGGT		59	NA	
Drosophila melanogaster	50	CG13096	FBgn0032050	FBtr0079698	3	1	1	60	2L	8509919	8509937	CGATGTACCTCAAGATCGA		58	8509877	8509896	CACATGCTGACATATAGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	U26	FBgn0027780	FBtr0089673	2	1	2	99	2L	8448497	8448515	TCACTGTTCTGCAGATGAC		59	8448345	8448436	AGCAGTACTCTCAATGAACTG		59	NA	
Drosophila melanogaster	50	mus201	FBgn0002887	FBtr0005674,FBtr0005673,FBtr0100473	2	3	3	111	2L	8440832	8440850	CAGTGATGAGGAAGTTTCG		58	8440925	8441035	TTTGATAATCTCCTCCGGA		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG7224	FBgn0031971	FBtr0079532,FBtr0100151	3	2	2	74	2L	7999252	7999270	GCTATCTATCGACGAGTGG		59	7999308	7999326	TTGGTTCCTTGATCTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7203	FBgn0031942	FBtr0079498	3	1	1	70	2L	7752417	7752436	TGGTAATCACCTGAAATGAC		57	7752366	7752384	GTAAAGATGCGAGCAAGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG31904	FBgn0051904	FBtr0079502,FBtr0079501	2	2	2	107	2L	7735484	7735566	ATTTAAAGGCATTGGCTACG		58	7735396	7735414	GGGTGTATTGAATTCACGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG13792	FBgn0031927	FBtr0079520	1	1	1	60	2L	7643923	7643944	GAAGACGACCAATATTAAGACC		58	7643884	7643903	CACTAAATTCGATTGGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17378	FBgn0031858	FBtr0079336,FBtr0079337	1	2	2	60	2L	6777584	6777665	CCTATCCAAGGATAAAGCCA		58	6777688	6777706	CGTCTCATGGTACATTCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	eya	FBgn0000320	FBtr0079334,FBtr0079335	3	2	2	232	2L	6528505	6528585	TATCGTGGAAATGTTGGCA		59	6528291	6528309	TTCTCGATGTTGAAGATGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG9548	FBgn0031822	FBtr0079264	3	1	1	84	2L	6490336	6490355	ATTGTAAATCTAGGCAGCTC		57	6490206	6490292	GGAGAGCAGATTAATAGTTCTG		58	NA	InUTR
Drosophila melanogaster	50	CG9511	FBgn0031810	FBtr0113025,FBtr0079276	3	2	2	62	2L	6396117	6396135	GTTTGCTATACGACGAGAC		58	6396073	6396091	TGAAGACCTGATACAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ucp4B	FBgn0031758	FBtr0079174,FBtr0079173	3	2	2	60	2L	5969913	5969932	CGTTAACACAGTCTTTAGGC		58	5969955	5969973	CTTGGGTCTTTCCTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18266	FBgn0031724	FBtr0079109	1	1	1	60	2L	5598250	5598268	AACTGGATGAAACAGGTGG		59	5598292	5598310	TGTCAAAGCCCTGATTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18269	FBgn0031719	FBtr0079103	1	1	1	60	2L	5552372	5552391	GAATCGTGAACCAAATGGTG		59	5552412	5552432	ATAGTTTCTCAGGTTGCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hel25E	FBgn0014189	FBtr0079123,FBtr0079125,FBtr0079124	3	3	3	84	2L	5539760	5539781	TACTTAACGAAGTACAGGATCG		59	5539635	5539717	CGTCCCTCAATGTATGTAGAG		59	NA	
Drosophila melanogaster	50	CG8885	FBgn0031656	FBtr0079052	2	1	1	60	2L	4968558	4968578	GTTGGGAATTAGTTGATTCGC		59	4968518	4968536	CACTTGCCTAAGAAGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2955	FBgn0031585	FBtr0077468	3	1	1	60	2L	4149435	4149456	TTACGTACGTTTAGAGGAACTG		59	4149476	4149495	CAGCTTATGAAGCATTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3238	FBgn0031540	FBtr0077569	2	1	1	60	2L	3468231	3468250	GTGGATAATAAAGACCGCCT		59	3468190	3468208	TAACTTCAGTGGCACTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34175	FBgn0085204	FBtr0112366	1	1	1	149	2L	3398231	3398249	GATACAGGGTATCAGGAGC		58	3398362	3398380	AGCCTCTTTATTCTCGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9664	FBgn0031515	FBtr0077607,FBtr0077605	1	2	3	88	2L	3292518	3292536	TGAATCGCTCATCACTCAG		59	3292290	3292466	CTATCAAGGCTGTCTCCTC		58	NA	
Drosophila melanogaster	50	toc	FBgn0015600	FBtr0110903,FBtr0077665,FBtr0077663,FBtr0077662,FBtr0077664	2	5	6	91	2L	3071761	3080665	TTCATGTCCAAAGAGCTGG		59	3071688	3071709	AGCAATATAGTCTTCTCTAGCG		59	NA	
Drosophila melanogaster	50	colt	FBgn0019830	FBtr0077734,FBtr0077732,FBtr0077733,FBtr0077731	1	4	4	65	2L	2769055	2769073	CTATACAAGGAGGGTGGAC		58	2769008	2769026	CAAATCCCTGAGCATTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hrs	FBgn0031450	FBtr0089751,FBtr0089750	3	2	3	168	2L	2740460	2740524	CAGAAAGATGTCACTCCCA		58	2740656	2740674	TGAACATCTCGCAGTTCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Clp	FBgn0015621	FBtr0078011	3	1	1	78	2L	820810	820828	ATCCAATCACCACAGTCAG		59	820870	820888	CTTGTAGCAGGTGATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4297	FBgn0031258	FBtr0078085,FBtr0078086	2	2	2	60	2L	463730	463748	CTATATTACGGGTCCACGA		57	463688	463706	TGACATATGGCGATACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3164	FBgn0025683	FBtr0078153,FBtr0078155,FBtr0100379,FBtr0078154	3	4	4	81	2L	123791	123873	CTATTACGATCCTATCATTCCC		57	123731	123749	TAGGACTTTAGCGAGTACC		57	NA	
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	1	7	8	80	2L	119224	119297	TATAATGCAGACTGATGTCCTG		59	119165	119184	TTTCCCAACTTCAAGTTTGC		59	NA	
Drosophila melanogaster	50	Nhe1	FBgn0026787	FBtr0078161	3	1	1	96	2L	105331	105403	CAACCTATCCACTGTTACC		57	105253	105271	TGCTAATCCCAGATAAGCA		58	NA	
Drosophila melanogaster	50	CR32658	FBgn0040859	FBtr0073627	1	1	3	197	X	11985522	11985617	GTTGATACTTCTAGCGCCA		59	11985841	11985859	CATCAAGTGTGCGTTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40485	FBgn0069973	FBtr0111189	2	1	2	107	X	22363682	22363700	AGGAACTCAACATGTACCC		58	22363290	22363611	TAATGCTCGTGACCTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41354	FBgn0083996	FBtr0111186	2	1	1	169	X	22360165	22360183	ACACTTACCCGTTACAGAC		58	22359126	22359144	ACGTTTCTGGGAAATAACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab10	FBgn0015789	FBtr0077337	1	1	1	62	X	20123452	20123471	GACATAACGAACGAGAAGAG		58	20123496	20123584	GTGCTCGTCTATATTCCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32533	FBgn0052533	FBtr0074786	2	1	1	62	X	19368797	19370159	TTACGACAAGCTGGATGAC		59	19368753	19368772	CTATCGTCACTTGAATGGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6659	FBgn0030946	FBtr0074613,FBtr0074612	3	2	2	95	X	18550294	18550365	ATGTTCATGATCTTCGCCA		59	18550217	18550235	CATGATCAGGATCTGGGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG32495	FBgn0052495	FBtr0089800,FBtr0089799,FBtr0089801	2	3	3	82	X	17798672	17798835	ATAAGCTGCACAATATGCC		58	17798881	17798899	CTTTGCATAGATGTCCCAC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12992	FBgn0030846	FBtr0074450	2	1	1	109	X	17484393	17484412	TTATAGCAAGAAACAGGGCA		59	17484484	17484577	TCTGTTTCACAGTGTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15239	FBgn0029681	FBtr0070612	3	1	1	260	X	3783463	3783481	CTGTTTCAAGTTTGGACCG		59	3783853	3783871	CTAAAGCCACCGTAATCAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Mnt	FBgn0023215	FBtr0070579,FBtr0070578	1	2	3	83	X	3593048	3593152	CCAATAGTAATGGAGCGGG		59	3593199	3593217	GGTCATAGCACTCCTTCAG		59	NA	
Drosophila melanogaster	50	CG14050	FBgn0040392	FBtr0070407	3	1	1	78	X	2219481	2219499	CAATCCGACGAAGAAAGTC		58	2219336	2219439	GTCCTCGGTAATGAAAGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2246	FBgn0039790	FBtr0085677,FBtr0085676,FBtr0085674,FBtr0085678,FBtr0085675,FBtr0085673	1	6	6	80	3R	26421158	26421178	AGACTATTGTGGAGATCAGTG		58	26421037	26421117	TATTGTTGGCATCCTTTGTG		58	NA	
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0110914	1	1	9	91	3R	24732971	24732989	CTATCACCAAGATCGAGGG		58	24733044	24733434	CATCTGCAGATACTGCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14258	FBgn0039482	FBtr0085103	1	1	1	64	3R	22919429	22919447	AAGTCAAAGGACACGTCTC		59	22919475	22919549	TTCAGCTTCGAAGTATCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17192	FBgn0039472	FBtr0085153	1	1	1	88	3R	22843901	22843975	ATTAGTAGCGGGTAATGCC		59	22843831	22843849	ACTGAAATGTGCCATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sda	FBgn0015541	FBtr0112882,FBtr0085066	1	2	2	80	3R	22769908	22769995	GGAGATTGTCGAATACTATGG		57	22770036	22770055	TCCTTGTTCATGTAGATGGT		58	NA	
Drosophila melanogaster	50	CG31099	FBgn0051099	FBtr0084856	1	1	1	227	3R	21135648	21135730	CTGCCATTGATTTGTACTACAC		59	21135389	21135407	TCATCATCGTTATGGGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13840	FBgn0039028	FBtr0084315	3	1	1	60	3R	18641086	18641104	TCAAAGAACTCCAGACACC		59	18641044	18641062	CTCGATAGGGACTCTTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4562	FBgn0038740	FBtr0083859,FBtr0113250	2	2	2	90	3R	15695192	15695212	CGGACTGTTTATCGTATTTGC		59	15695061	15695140	TTTGTTCACCCAGTAGGAC		59	NA	
Drosophila melanogaster	50	Zip3	FBgn0038412	FBtr0083266	3	1	1	106	3R	12133023	12133043	GGTGTTCTTTGAGATACTCTC		57	12133111	12134061	CAATGGAAGTCAACTGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mhcl	FBgn0026059	FBtr0083232,FBtr0110973,FBtr0083233,FBtr0110974,FBtr0083229,FBtr0083231	2	6	6	94	3R	11898683	11898767	TTGGAGATGAAGCTTTCCG		59	11898607	11898625	TCGTTGGTCATCTTCTGTG		59	NA	
Drosophila melanogaster	50	pxb	FBgn0053207	FBtr0083162,FBtr0083161	2	2	2	86	3R	11497623	11497641	GATCGAGGAGGTATACCAC		58	11497691	11497709	AGTTCCATCATATCCAGCA		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7987	FBgn0038244	FBtr0082978,FBtr0082979	1	2	2	75	3R	10400292	10400310	GTAATCACAGACGACTGGG		59	10400170	10400188	TAATCCCAGCTATCTGCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Art6	FBgn0038189	FBtr0082878	1	1	1	106	3R	9771029	9771107	GAAATGCTCTGTATATGGAGG		57	9770943	9770961	TAACCAGAGGTTTCCAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14715	FBgn0037930	FBtr0082423	2	1	1	95	3R	7500236	7500254	AGTTCGATAGCAGCTACTC		58	7500313	7500331	ACATACCAAGGATTCCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6719	FBgn0037893	FBtr0082406	3	1	1	248	3R	7235145	7235163	AAATGGTCAATGTGCTTCG		59	7234854	7234936	TAGTTGTGATTTGATCCCTCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	pros	FBgn0004595	FBtr0089720,FBtr0089719,FBtr0089718	3	3	3	84	3R	7203836	7203854	TCAAGATGTACTTCCCGGA		59	7203900	7217259	TAGAATTCTCGGAAGTTCGAG		59	NA	
Drosophila melanogaster	50	topi	FBgn0037751	FBtr0082135	3	1	1	99	3R	5602326	5602344	TAAATGTCACGCTTAGTCG		57	5602407	5602485	TAGTGAAAGGAGGTACACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	SpdS	FBgn0037723	FBtr0082078	3	1	2	73	3R	5457573	5458113	AAACCGAAACCTATGGACG		59	5458150	5458168	GTACGAGAACTCATCCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mkk4	FBgn0024326	FBtr0081892	1	1	1	60	3R	4474724	4474742	TTGACATCCTATAACGGCA		58	4474617	4474701	GGCAAGTATTGACAAAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mRpS18A	FBgn0051450	FBtr0081897	3	1	1	75	3R	4388175	4388193	GAAGTACCATTGCTCAGGT		59	4388022	4388137	TCCTGCTTCTCATGAATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31473	FBgn0051473	FBtr0081749	2	1	1	61	3R	3638322	3638555	GGGTACAAGAGTTGGTCAC		59	3638578	3638598	CATCACACGAATCATAAACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sunz	FBgn0037462	FBtr0081681	1	1	1	173	3R	2456320	2456393	GGTTTATACAAGCGGTGGT		59	2456588	2456606	TCTTCAAACGCTATCACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33324	FBgn0053324	FBtr0081727	2	1	1	167	3R	2272025	2272184	TTATCGCCAGTGTATCACG		59	2272315	2272333	CGTGTTGCAACTAATCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi15	FBgn0037424	FBtr0078607	3	1	1	207	3R	2128612	2128630	AAGTTCATCTCGCTGAAGG		59	2128859	2128877	CATAGTGGTTGTAGGCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10999	FBgn0037381	FBtr0078634	1	1	3	100	3R	1640975	1640993	TATGAAGACCTCAAGGCTG		58	1643289	1643307	TTGACTTCGTGCTCATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	tacc	FBgn0026620	FBtr0089955,FBtr0089951,FBtr0089953,FBtr0089949,FBtr0089952,FBtr0089954,FBtr0089950	2	7	7	126	3R	563223	563241	ATACAGCCAAGAAATGGGA		58	562960	563039	TCCTCCGTATTAGTGTTGG		58	NA	
Drosophila melanogaster	50	CG12971	FBgn0037078	FBtr0078402	3	1	1	223	3L	21349267	21349285	TCTGTTCCAACATCAGACG		59	21348877	21348895	CATTTGGACGCATGTACTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12972	FBgn0037076	FBtr0078403	2	1	1	75	3L	21339163	21339794	AAAGGGATCAAATCCCGTC		59	21339106	21339124	CATAGTAACGGATTACGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr78Ca	FBgn0037067	FBtr0078409	2	1	1	97	3L	21285668	21285751	AGATTGTGGTATTCCTGGT		57	21285589	21285608	CGTATTCCGGTAGTAGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4858	FBgn0037011	FBtr0078210	1	1	1	101	3L	20520371	20520701	ATATGAGTGGGTTCGTGTG		59	20520766	20520784	CTAGATGTGGTACTTGGGC		59	NA	
Drosophila melanogaster	50	CG14077	FBgn0036830	FBtr0075072	1	1	1	80	3L	18906645	18906663	AAACCTCTAACAGCGATCC		59	18906532	18906602	GTGTTGTGCAACAATTTGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG18233	FBgn0036795	FBtr0075103	3	1	1	180	3L	18600086	18600165	TATGCTGGAGAAGTCTCAC		58	18600307	18600327	CATAATACTCACTCCATCGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	comm	FBgn0010105	FBtr0075579	2	1	1	119	3L	15720882	15720900	TTATCTGTGGATCGGAGTG		58	15716356	15720799	GCACGTATGTCCTTATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12355	FBgn0040805	FBtr0075606	3	1	2	286	3L	15486664	15487043	CAACGTACAAATGGTTAGATCG		59	15486261	15486282	CCAAATCAATCCACAAATACCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG5883	FBgn0036225	FBtr0076067	1	1	1	76	3L	11937810	11937896	GGACTTCCTAGTTCTTTGGT		58	11937753	11937771	AAGTAACGCGTTTGAATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha16-2	FBgn0028668	FBtr0076091	2	1	1	61	3L	11468304	11468322	CTACGGATTGGTGGTATCC		59	11468345	11468365	CTTCCATCGTATAATCATCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6185	FBgn0036150	FBtr0076185	2	1	1	86	3L	11227336	11227354	ATCTACTGCATCCTCTTGG		58	11227206	11227286	TGTGTCTATAGTGACCCTG		57	NA	
Drosophila melanogaster	50	CG8003	FBgn0036096	FBtr0076260	2	1	1	139	3L	10655708	10655786	GATGAGGTGGATTACGGAC		59	10655889	10655907	TCTTCTTGTGCATGAACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34001	FBgn0054001	FBtr0100056	3	1	1	71	3L	10627293	10627382	CAACCTATTCTCATCATTGGAC		58	10627414	10627432	CACCGCAAATGGTTTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8072	FBgn0036070	FBtr0076295	3	1	1	64	3L	10145188	10145255	TGATGTTCGATGAGAGCTG		59	10145283	10145301	ATACTCACGGAAATAGGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6707	FBgn0036058	FBtr0076356,FBtr0076358,FBtr0076357	3	3	3	108	3L	9888975	9889074	CATACTCGATTGCTTCGGA		59	9888885	9888906	ACTTTAAGGCGGAAATAGTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3434	FBgn0036000	FBtr0076473	2	1	1	63	3L	9452679	9452757	TGGTTCACAACCTTTATCAC		58	9452635	9452653	TCTTTAGCCACACTCTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PGRP-LC	FBgn0035976	FBtr0089491	1	1	3	197	3L	9338224	9340757	GATCTGGACAACATTGGTG		58	9340918	9340936	TATATCGTAGGTCTGCAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17744	FBgn0035730	FBtr0076932	3	1	1	62	3L	7019639	7019657	CTGGTGGCCAGATTATGAG		59	7019527	7019616	AGACCATTCATATCTGTGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sse	FBgn0035627	FBtr0077125	1	1	1	117	3L	5653530	5653605	TTGCTTTGTATACGCAGGT		59	5653431	5653449	CAACATGCGTGTAGAATCG		59	NA	
Drosophila melanogaster	50	CG34057	FBgn0054057	FBtr0100835	2	1	2	256	3L	897725	897743	CATACTCTGCCTAGTGCTC		59	897962	898036	TATAAGTGTCATCATCGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	5SrRNA:CR33382	FBgn0053382	FBtr0086374	1	1	1	62	2R	15643003	15643021	AATACATCGGTTCTCGTCC		59	15642959	15642977	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13590	FBgn0035012	FBtr0072353	3	1	1	133	2R	20381070	20381088	ATCTGGTACATGATCCGGA		59	20380903	20380923	TCGACCATTAGTAGATAGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG4329	FBgn0034745	FBtr0071940	2	1	2	87	2R	18499319	18499386	GATCATCATGACTGCCTCC		59	18499250	18499268	CACCTGAAATTTGCGAACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	LBR	FBgn0034657	FBtr0071713,FBtr0071711,FBtr0071712	3	3	3	98	2R	17608823	17609371	GGTTTCCGAGGTATCATCG		59	17609432	17609451	TTAAATGCTTTGTTCGGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mago	FBgn0002736	FBtr0071569	2	1	1	155	2R	17016322	17016340	AAGAACGACACCATGATCC		59	17016459	17016535	GATGACGATCTCCAGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	exu	FBgn0000615	FBtr0086243,FBtr0086242,FBtr0086244	1	3	3	92	2R	16557555	16557573	AATCTGAATCCAGCTGCTC		59	16557398	16557502	GATCTTATAAGTCTGCATCGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14502	FBgn0034321	FBtr0086756,FBtr0086757	2	2	2	62	2R	14181611	14181629	GAGAATATGCCCTTTCTGG		57	14181652	14181767	CAACCATGGTATTATCTTCTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	sub	FBgn0003545	FBtr0086881	2	1	1	66	2R	13633611	13633688	TTTATGCTTTCCTCTCAACG		58	13633564	13633585	CCTCTATCTCATCTTTGAGGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	JhI-26	FBgn0028424	FBtr0087139	3	1	1	71	2R	12178241	12178435	TTCCGGATTTCCTAAGTCG		59	12178469	12178488	ATATGGATAAGCTGTACGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11808	FBgn0034000	FBtr0087366	1	1	1	69	2R	11104371	11104452	ATTCCATCCGAACTTCCTG		59	11104485	11104503	GTAATTGTACAGCTTGCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HPS	FBgn0033973	FBtr0087449	3	1	1	60	2R	10744011	10744029	CCGATGACCTAGAGAACTG		58	10744053	10744071	ATCTTGCGAAGATTCTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8503	FBgn0033917	FBtr0087536	2	1	1	201	2R	10131885	10131903	GGTCAGAAGGTTAATGTGC		58	10132068	10132348	ACTTTGGAATAAACTGCCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Cp1	FBgn0013770	FBtr0087592,FBtr0087591,FBtr0087593	1	3	3	166	2R	9849825	9854261	AATGGCATACGTTCAAGCT		59	9854391	9854409	ATCGGCGTACTTATTGACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33012	FBgn0053012	FBtr0087909,FBtr0087910	1	2	2	80	2R	8258085	8258176	TTTCGAAATGACGAAGGAC		58	8258219	8258238	AGATGACTCATATAGTGCCC		58	NA	
Drosophila melanogaster	50	pds5	FBgn0033676	FBtr0087974	1	1	1	94	2R	7916599	7916680	GATTGTCAATGACCAGCAC		59	7916738	7916756	ATTCCACCGACAGATTGTC		59	NA	
Drosophila melanogaster	50	CG13211	FBgn0033613	FBtr0088173	1	1	2	222	2R	7182562	7182580	GTTCTCCAAGGATCTCGTC		59	7182286	7182376	GAGAGCGAATATGGAGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pkn	FBgn0020621	FBtr0112897,FBtr0088603,FBtr0088605,FBtr0088602,FBtr0088604,FBtr0088601	2	6	6	101	2R	5141852	5141871	CGGAGGATGTTAAGAAACAG		58	5141703	5141788	CCAAGTGGTTAATTGTCGG		58	NA	
Drosophila melanogaster	50	CG2915	FBgn0033241	FBtr0088879,FBtr0088878	1	2	2	81	2R	3846909	3846927	TTATCCATTCTGGTAGCGG		58	3846787	3846864	TCAACACTCTATGCTTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12164	FBgn0033158	FBtr0088963	3	1	1	111	2R	3199604	3199686	GAAGGAAGTCAAGGTTCCC		59	3199761	3199779	CACCTTAACCTCCTTCCAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG15236	FBgn0033108	FBtr0086160,FBtr0086161	2	2	2	229	2R	2722213	2722231	CCATCTAGTAACAGCTCGG		59	2722424	2723008	ATCTGTCCAAGATCTGTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7861	FBgn0033055	FBtr0085974	3	1	2	118	2R	1931430	1931448	ATGGAGAATGGTATCGAGG		58	1931530	1931605	TCAGCCTCATTCCAAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11665	FBgn0033028	FBtr0086072	2	1	1	100	2R	1531219	1531335	TTATAGTTCATTGGGCCCG		59	1531137	1531155	GTATCATACCCAGTGACGC		59	NA	
Drosophila melanogaster	50	CG41448	FBgn0084012	FBtr0111271	2	1	1	61	2R	562478	562689	ATTGAGAAAGAGGAACCGT		58	562435	562453	CTTGTAAACCTCACGTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lar	FBgn0000464	FBtr0081260,FBtr0112800	3	2	2	81	2L	19729578	19729598	CGCTATCAGTATTATGTCGTG		58	19729639	19729729	CATCCGTGACCTTAAATTCAC		59	NA	
Drosophila melanogaster	50	Ddc	FBgn0000422	FBtr0081167,FBtr0081166	3	2	3	170	2L	19118128	19119174	TGGAGAATATACGCGAAAGG		59	19117977	19117995	CATGAAACTTGGGACTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33648	FBgn0053648	FBtr0091625	1	1	1	174	2L	14524982	14525054	CGTAAGTATAGTTGAGTTCACC		58	14525251	14525269	ATATCGCTTGTATAGGGCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG16852	FBgn0028942	FBtr0080507	1	1	1	84	2L	13540994	13541013	CCCAAAGAGTGAATATGGAC		57	13541059	13541139	CACGATTTGATCTTCTTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6153	FBgn0032445	FBtr0080394	2	1	1	61	2L	12693651	12693733	ATATAGGTCTTCGAGGAGAG		57	12693756	12693775	GTAGTTGCATATGGTTACGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	sala	FBgn0003313	FBtr0080237	1	1	1	85	2L	11486211	11486300	TGAAACTACTGATTGCTCTG		57	11486348	11486366	TCCATATCCTCCTTGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5337	FBgn0032249	FBtr0080043	3	1	1	91	2L	10433910	10433929	ATAATCCCAATACCGAGGTC		58	10433764	10433856	GAGATCACTCATACCCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SmB	FBgn0010083	FBtr0080045	1	1	1	61	2L	10426017	10426035	CAAAGCCTTCGACAAACAC		59	10425974	10425992	GAATCTTCCGGAACTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13102	FBgn0032088	FBtr0079766	2	1	1	81	2L	9012551	9012636	GTACAACTGGAATAACGATGTG		59	9012678	9012696	CTTAAGTGCTAAGCTGCAG		58	NA	
Drosophila melanogaster	50	CG7277	FBgn0031713	FBtr0079128	1	1	1	60	2L	5531845	5531863	ATACCAGAATCGCGTATCC		59	5531803	5531821	ATCAATGGACTTGAACAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31955	FBgn0051955	FBtr0077540	3	1	1	63	2L	3712541	3712559	ATGAATACAGTGAGCCCAG		59	3712444	3712514	ATATTGTAGGCCTCCTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	msl-2	FBgn0005616	FBtr0077571,FBtr0077570	2	2	2	204	2L	3463883	3463901	ATTTCGAAATGCCGAAGGA		59	3463645	3463716	ATATTGAAGCCCTGGTACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5800	FBgn0030855	FBtr0074453	2	1	1	60	X	17532509	17532528	GAGGCATTAATCTAGTGCTG		58	17532550	17532569	TGCTTGTCATATTGATCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dsp1	FBgn0011764	FBtr0089259,FBtr0089261,FBtr0089260	3	3	5	242	X	16228438	16230333	CAAATACAGCAATTGGCTG		57	16230539	16230557	ATAATCATAGCCCGTGGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	rho-4	FBgn0030318	FBtr0073518,FBtr0073517,FBtr0073519	2	3	3	82	X	11498696	11498777	ATACATTTCCAGGACGATCC		59	11498822	11498840	TTGTAGATGAACAGGGTGG		58	NA	
Drosophila melanogaster	50	CG2186	FBgn0030243	FBtr0073381	3	1	1	233	X	10752388	10752406	GATGAGTTGCTACTCTCGG		59	10752668	10752686	AGATGAAGCTAGCTCTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2875	FBgn0029672	FBtr0070586,FBtr0070587	1	2	2	66	X	3466638	3466656	CTTTCTCATGGACTCCCTC		59	3466528	3466546	AAAGATTCCCTGAAGAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	trol	FBgn0001402	FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964	1	4	7	80	X	2386428	2386446	TAGTAATGATCGCAGACCG		58	2384863	2386384	CCAACGTCGTTATTCTCCT		59	NA	
Drosophila melanogaster	50	CG5254	FBgn0040383	FBtr0070134	2	1	1	60	X	652499	652517	CCAAGATTATGCGTTTGGG		59	652541	652559	TAGGAGTACTCGAAGACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vnd	FBgn0003986	FBtr0070110,FBtr0110929	2	2	2	85	X	488326	490393	GAACGAGCTATACGGTACC		59	490441	490460	AACCAATGTAGGTGTACGAC		59	NA	
Drosophila melanogaster	50	CaMKI	FBgn0016126	FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065	3	6	7	103	4	467819	467838	GAAAGGAAGAATCTCTGGAG		57	470592	470883	ATTTGGATGAGTTAACCGC		58	NA	
Drosophila melanogaster	50	CG2246	FBgn0039790	FBtr0085677,FBtr0085676,FBtr0085674,FBtr0085678,FBtr0085675,FBtr0085673	3	6	6	82	3R	26421160	26421180	GGAGACTATTGTGGAGATCAG		59	26421037	26421117	TATTGTTGGCATCCTTTGTG		58	NA	
Drosophila melanogaster	50	CG33204	FBgn0053204	FBtr0089470	3	1	1	108	3R	24741129	24742159	TAGACGATCGAAGAGATCTG		58	24742230	24742248	GAGTATTTGTTCTCCAGCC		57	NA	Nonspecific
Drosophila melanogaster	50	CG11790	FBgn0039265	FBtr0084760,FBtr0084761	3	2	2	90	3R	20874455	20874473	CTGAGAAGGGATATACCCA		57	20875008	20875026	AAATAACTTTGCAGTGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0084683,FBtr0100635,FBtr0084685	3	3	17	92	3R	20521093	20521111	GGACATTAAGGACGAGACG		59	20521838	20527819	TGGTGTTCATCTAAGTCATCG		59	NA	
Drosophila melanogaster	50	Oamb	FBgn0024944	FBtr0083932,FBtr0083933,FBtr0083934	3	3	3	91	3R	16526375	16526394	TATTGTCAACCTAGCTGTGG		59	16526041	16526324	CGAATATCCAAACCTTGAAGAC		59	NA	
Drosophila melanogaster	50	CG34308	FBgn0085337	FBtr0112504	2	1	1	61	3R	8915295	8915313	ACCCTCATCACTATCACCA		59	8915338	8915356	CTCCACAAAGGATTTGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14605	FBgn0037486	FBtr0081600,FBtr0081601	2	2	3	99	3R	3044372	3044393	CAACAGGACGATAATAAAGCTG		59	3044111	3044315	CCTTGTTAAAGAAATCAGCAGG		59	NA	
Drosophila melanogaster	50	CG1126	FBgn0037280	FBtr0078872	3	1	1	90	3R	642602	642683	CGACGTATATCACCTTTATCAG		58	642734	642752	TAGGATAACCAGTTGACCC		57	NA	
Drosophila melanogaster	50	CG5059	FBgn0037007	FBtr0078218,FBtr0078216,FBtr0078217,FBtr0078219	1	4	4	116	3L	20508982	20509000	TGATGAGCTCAGAAACGTG		59	20508709	20508828	TCAATGTTCCAGCTACTGG		59	NA	
Drosophila melanogaster	50	CG5976	FBgn0036999	FBtr0078200,FBtr0078199	2	2	2	60	3L	20468718	20468738	TCTATCCGATAAGCTACACCT		59	20468759	20468778	CACAACTCGAGGTATAAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32058	FBgn0052058	FBtr0076293	3	1	1	60	3L	10425786	10425804	GAGGTGTACGACCAAAGAC		59	10425744	10425763	ATTCCACATACGGTAATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32043	FBgn0052043	FBtr0114368,FBtr0076465,FBtr0114367,FBtr0076466	2	4	4	107	3L	9463440	9463458	AAATTCGCTCGATATCTGG		57	9463529	9463669	CTTCGTGTAGATTTCCGTG		58	NA	
Drosophila melanogaster	50	ERR	FBgn0035849	FBtr0076724,FBtr0076725	2	2	2	76	3L	8177588	8177606	GTCTACTAATGGGCATGCT		59	8177474	8177492	ATTCCTTCGGTACTTCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Myo61F	FBgn0010246	FBtr0072675,FBtr0072673,FBtr0072672,FBtr0072674	1	4	4	83	3L	1326066	1326084	TCCTCGAGAACTACCAGAG		59	1326127	1326210	CAATGTAGGTATAGATCAGGTCC		59	NA	
Drosophila melanogaster	50	Dll	FBgn0000157	FBtr0072378,FBtr0072379	3	2	2	166	2R	20705136	20705154	ACCTATCAGCATTTCGGAC		59	20705284	20707346	ATGGAGAAGTCATCCTTCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG3257	FBgn0034978	FBtr0072252	2	1	2	113	2R	20007770	20008246	GCGATTGGGATATCTTAACC		58	20008322	20008340	TCTAGAACATGCTCGTAGG		58	NA	
Drosophila melanogaster	50	CG3065	FBgn0034946	FBtr0072153,FBtr0072155,FBtr0072154	1	3	3	60	2R	19859012	19859033	CAAGCCGATAAAGATTAAGCTG		59	19859052	19859072	AGATACGATCTGGTACTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6044	FBgn0034725	FBtr0113108,FBtr0071823	3	2	2	60	2R	18295312	18295331	AAGCAGTTTGAGTTCAAGAC		58	18295354	18295372	AACGTAATCACGTAATGCC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG6393	FBgn0034685	FBtr0071752,FBtr0071751,FBtr0071750	2	3	4	81	2R	17956169	17956254	GATAATTGAATTCCCAGCAGTG		59	17956296	17956314	GAAGGGAAGGATGTACTGG		59	NA	
Drosophila melanogaster	50	CG10764	FBgn0034221	FBtr0086919	2	1	1	93	2R	13341439	13341547	TATGATCTATACGTGAGGTTGG		58	13341601	13341619	CAATGAAGTCATGGTGCAC		59	NA	
Drosophila melanogaster	50	Dek	FBgn0026533	FBtr0100437,FBtr0100438,FBtr0100436	3	3	4	148	2R	12747152	12747173	CGGATATGTCAAAGAGATTCTG		58	12747282	12747364	TCGCAATTAACGCTTTCAC		59	NA	
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	1	12	12	88	2R	6499952	6500255	GCATATGGACATGTATAACTCG		58	6500304	6500322	TATAGTGCGGTTCCTTCTG		58	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	1	9	9	149	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349137	6349157	GACAGCATCGAATACAAACTG		59	NA	
Drosophila melanogaster	50	CG1667	FBgn0033453	FBtr0088479	3	1	1	86	2R	5731845	5731863	GGCTACCTCAAACTTTCAC		58	5731910	5731983	GGTAACATTATTCTTGTCCTCG		58	NA	
Drosophila melanogaster	50	Vps25	FBgn0022027	FBtr0088694	3	1	1	153	2R	4513455	4513473	CTGTACGAAATAGCCTCCG		59	4513589	4513608	CTTAGAAGAACTTAACGCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111090	2	1	60	180	2R	3249368	3253985	CAGGCACTGAATATGATGGA		59	3238787	3249225	TTAAATCCCACAGGCTCTG		59	NA	
Drosophila melanogaster	50	Syx5	FBgn0011708	FBtr0080831	3	1	2	115	2L	16308277	16308296	TATTGGCAAGAACATAGCCA		59	16308442	16308460	TGATATAGGTCAGCTCCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0080711,FBtr0100613,FBtr0080712	3	3	7	107	2L	15261795	15261813	ATCTACGACGAATCCTCGA		59	15261626	15261725	CGTATCGCATTCAATTTCCA		58	NA	Nonspecific
Drosophila melanogaster	50	rk	FBgn0003255	FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610	3	4	5	90	2L	13991706	13992947	GTGGTCGTCCTAGATTTGG		59	13991051	13991652	ACAAAGTTAGCTCCTCCAG		58	NA	
Drosophila melanogaster	50	nrv2	FBgn0015777	FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382	1	5	5	84	2L	6791573	6791591	TTTGATCTGGTACAAGGGC		59	6791313	6791525	TACTTTGTACACCGCAAGG		59	NA	
Drosophila melanogaster	50	tutl	FBgn0010473	FBtr0089268	2	1	4	90	2L	4304833	4305358	GTAATCATGGATAAGGCGG		57	4305412	4305430	GACTTACACGTATGGTCAG		57	NA	
Drosophila melanogaster	50	drm	FBgn0024244	FBtr0077531,FBtr0077530	2	2	2	78	2L	3545739	3545757	TGAGATCACCTATTCGTGC		59	3545799	3546740	CTGACTACATCTGTGCTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3542	FBgn0031492	FBtr0077648,FBtr0077649	3	2	2	80	2L	3024052	3024070	CACGTTAGCGGCTATAGAG		59	3024169	3024188	TTATCCTTAAACACCACAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14515	FBgn0039648	FBtr0085389	2	1	1	231	3R	25023559	25023578	GATATCGGTGGTCATCTACC		59	25023772	25024807	CGTGAAGTAGACTTGTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13613	FBgn0039193	FBtr0113278	3	1	1	118	3R	20191762	20191916	ATAACCTTCCTGCTCACAC		59	20191997	20192016	GATAGATGACACTGACCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	AP-1sigma	FBgn0039132	FBtr0084496	2	1	1	98	3R	19785069	19785087	ATTCATCGCTATGTGGAGC		59	19785214	19785234	CTCATCCAGGATAAAGTATGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Aats-glupro	FBgn0005674	FBtr0084512,FBtr0084511	3	2	2	209	3R	19779100	19779186	TCAGTGGAATAACGTTGTCC		59	19778910	19778928	TTCTCCTTCTCAGTCTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Aats-glupro	FBgn0005674	FBtr0084512,FBtr0084511	1	2	2	207	3R	19779099	19779184	AGTGGAATAACGTTGTCCG		59	19778910	19778928	TTCTCCTTCTCAGTCTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6026	FBgn0038676	FBtr0083715	3	1	1	60	3R	14868838	14868860	GAATACCAGAATACTCCCTTCTC		59	14868880	14868898	TCTTGAGAATGGGTTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9611	FBgn0028487	FBtr0112937,FBtr0082846,FBtr0112939,FBtr0082847,FBtr0112938	2	5	5	84	3R	9521483	9521502	TTTGAGCACATTGGATTTGC		59	9521355	9521439	CTCCAAGTGAGTTATGTTTGTC		59	NA	
Drosophila melanogaster	50	CG4089	FBgn0037838	FBtr0082281	2	1	1	298	3R	6642323	6642341	AGCAAGTTCTATACAGCGT		58	6642659	6642735	GAATCTCATTGGATCGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34360	FBgn0085389	FBtr0114581,FBtr0112576,FBtr0114582	3	3	5	236	3R	5701938	5756097	GAAATGAGGAACCCATTGAG		58	5769231	5769249	GATAGTTGCCGTAGTCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10359	FBgn0035452	FBtr0114608,FBtr0073136	1	2	2	108	3L	3613110	3613128	CTACAAGGAGCTGATGACC		59	3613197	3613761	CAGCTGATCCAATTTCTTATCG		59	NA	
Drosophila melanogaster	50	CG30429	FBgn0050429	FBtr0072450	3	1	1	149	2R	21134524	21134600	TTTACGCTAATGGAAACCG		58	21134713	21134731	TTGGTTCATCCTGTACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3419	FBgn0035002	FBtr0072291	1	1	2	73	2R	20301533	20301551	GTCCATCAACTAGGACTGG		59	20301588	20302324	TAGGCAAGTGACACATACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8441	FBgn0034086	FBtr0087247	3	1	1	181	2R	12073249	12073328	ATGAAGAATCCGGATAAGCC		59	12073087	12073105	TTCTGGATGTTCTTCTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13392	FBgn0032033	FBtr0079720	3	1	1	189	2L	8382517	8382600	AATAGGCGAAGTATGGTCG		59	8382346	8382364	AATAAAGAACTTGTGCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31948	FBgn0051948	FBtr0077788	1	1	2	103	2L	2416370	2416444	TTGTGCAAGTCGTATCCAG		59	2416285	2416303	GAACTTCATTGGGCAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:Y1:85Ab	FBgn0012025	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Or-CD11c	FBgn0086070	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:SeC	FBgn0011987	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me18S-A934	FBgn0086036	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Ory	FBgn0046323	FBtr0113893	3	1	1	62	YHet	233542	233562	TGCTATCTCATATGCCTACTG		58	233586	271130	GGTTTATACGCTGTTGCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	snoRNA:Psi28S-2876	FBgn0086671	FBtr0091623	1	1	1	65	X	17038913	17038934	TCTATCTAATATCCGTAGCGTC		58	17038869	17038887	TCTCTTCGTTTCATACGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40500	FBgn0069968	FBtr0111198	3	1	4	68	X	22292809	22292829	CCGTATCGATATCGATATCGT		58	22292859	22306503	CTAGCTCCATTACACTGGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	fog	FBgn0000719	FBtr0077342,FBtr0100538	2	2	2	170	X	22246596	22246614	TTTATGTGGCCAGACTTGG		59	22230963	22230981	ACCATTCTCTGGACATTCC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14581	FBgn0040645	FBtr0077186	1	1	1	60	X	21126432	21126451	CTCCTGATCGATCTGAACTC		59	21126471	21126492	GAATATCGGTTTCGATTGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hydra	FBgn0031128	FBtr0077294,FBtr0077295	1	2	2	93	X	20542568	20542708	CCTTAAAGTAGAAGTCGTGGT		59	20542495	20542513	ATGGGTATGATTGGGTTGG		59	NA	
Drosophila melanogaster	50	CG15618	FBgn0031077	FBtr0074803	3	1	1	95	X	19759184	19759204	GCAAGATCATGAAGATGTAGC		59	19759034	19759127	GAGAAGAGTTTGGTCAGCT		59	NA	
Drosophila melanogaster	50	Shawn	FBgn0031039	FBtr0074738,FBtr0074737,FBtr0074739	3	3	3	116	X	19508311	19508329	TGTTTCCTCTACTGCAACG		59	19508409	19508486	GATGAATGCGTCAATGGTG		59	NA	Nonspecific
Drosophila melanogaster	50	Tyler	FBgn0031038	FBtr0074735,FBtr0074736	2	2	2	116	X	19508311	19508329	TGTTTCCTCTACTGCAACG		59	19508409	19508486	GATGAATGCGTCAATGGTG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG7876	FBgn0031000	FBtr0074673	1	1	1	60	X	19110186	19110205	TGGAACCACTGAGAAATCAG		59	19110225	19110246	AGTATCTGATTTATCCGTGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ulp1	FBgn0027603	FBtr0074693	2	1	1	101	X	19097931	19097952	CTTTCTAAGGAATGACTTTGCG		59	19097792	19097869	TCATTAGCCTGCTGTTCAG		59	NA	
Drosophila melanogaster	50	Cyp308a1	FBgn0030949	FBtr0074604	2	1	1	63	X	18605174	18605192	AACTTAAGGTGCATTTGGG		58	18605219	18605298	GCGGGATCTAAATGAATGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	wupA	FBgn0004028	FBtr0074522,FBtr0074524,FBtr0074525	2	3	7	81	X	18003548	18003569	GCGTATGTATATTTGTGAAGGC		59	18000950	18003507	ATTGAGATCGTTGATCTCCC		59	NA	
Drosophila melanogaster	50	RhoGAP16F	FBgn0030893	FBtr0074513	3	1	2	80	X	17990421	17990439	AAATCAAGAGTCCGTTGGT		59	17990483	17990563	ACAGATCGGTTAACAACCA		58	NA	
Drosophila melanogaster	50	CG32554	FBgn0052554	FBtr0074467	3	1	1	69	X	17746235	17746253	TATTTGATCGCCGATTTGG		58	17746184	17746202	TCCGTCTCCTTATGTTAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5004	FBgn0030820	FBtr0074386	2	1	1	113	X	17021830	17021848	ATTCATCTAGAGCAGCGTC		59	17021923	17022040	TAATTTCAACTCCAGTCCCTC		59	NA	
Drosophila melanogaster	50	if	FBgn0001250	FBtr0074357,FBtr0074358	3	2	2	126	X	16649962	16649980	TGAGCCGGTTATTGATCAG		59	16649783	16649872	ATACTTGTCCACAGTGCTG		59	NA	
Drosophila melanogaster	50	CG4653	FBgn0030776	FBtr0074321	2	1	1	60	X	16598763	16598781	GTTGGCTCTAATGACTTGG		58	16598805	16598823	TATTCGCATTCAGGACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lcch3	FBgn0010240	FBtr0074129,FBtr0074127,FBtr0074128	1	3	3	89	X	15821838	15821859	TGCCGTTAACTATACTTACTGG		59	15821909	15821993	TCACTCTTTCCGATCTTGC		59	NA	
Drosophila melanogaster	50	CG6340	FBgn0030648	FBtr0074038	1	1	4	69	X	15377389	15377407	AGAAGACAAAGCCGATGTC		59	15377440	15378567	TTTGACTCATCAATGCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9053	FBgn0030606	FBtr0073969,FBtr0073968	2	2	2	61	X	14960196	14960214	CAGAGTGCCTATACCACTC		58	14960153	14960173	GATTACCTGGTACTCAAAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9512	FBgn0030593	FBtr0073979	1	1	1	111	X	14798009	14798027	ATTGGTTCACCTCAGATCC		58	14796896	14796914	GATCCTTGAGGTTCTCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9400	FBgn0030562	FBtr0112982	3	1	2	63	X	14182787	14182808	GCTTCATCGATAGATATCATCC		58	14182591	14182610	ACAAGTAATGTGAAGTGACC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG34324	FBgn0085353	FBtr0112526	3	1	1	206	X	13350951	13350970	GACAATCCAGTTGCTATTGC		59	13350764	13350782	ACAGTTGTTGACGGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1640	FBgn0030478	FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769	1	6	6	82	X	13268114	13268132	ATTCAACCGTTAGACGTCC		59	13268315	13268333	ATGTTATCCAGTGTGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Smr	FBgn0024308	FBtr0073707,FBtr0073706,FBtr0073708	2	3	3	86	X	12604887	12604908	CAATTATCTTGGACAGAAGCTG		59	12604744	12604841	TTGGATTCACTAACATCCGA		58	NA	
Drosophila melanogaster	50	CG11085	FBgn0030408	FBtr0073656	2	1	1	207	X	12514225	12514243	AAACCTGGTACCAGAATCG		59	12514869	12514887	AAATTGCAAGGATTGCTGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Cyp318a1	FBgn0030369	FBtr0073623	1	1	1	87	X	11927455	11927473	ACGAATCTTCATGGACAGG		59	11927521	11927943	TAATGGTCAAACAGGATACCTC		59	NA	
Drosophila melanogaster	50	regucalcin	FBgn0030362	FBtr0073576,FBtr0073578,FBtr0073577,FBtr0073575	1	4	4	99	X	11910742	11910817	AGGTTAATCCCAACACTGG		59	11910880	11910898	TACAGGATGTCCAAGTTGG		58	NA	
Drosophila melanogaster	50	Hsc70-3	FBgn0001218	FBtr0073608,FBtr0073610,FBtr0073609,FBtr0073611	2	4	4	60	X	11697602	11697620	GATCTATTCCGTTCCACCC		59	11697560	11697578	TGTTCATGTCAGCATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PhKgamma	FBgn0011754	FBtr0090001,FBtr0090000	3	2	3	82	X	11592561	11592579	TCTAGTCGTTGATCCTTCG		58	11592624	11594666	CACCCATTAACACCATTTGG		59	NA	
Drosophila melanogaster	50	Atg8a	FBgn0052672	FBtr0071498	3	1	1	62	X	10659672	10659691	TTTGTGAACAACGTCATTCC		59	10659560	10659647	GTGATGTTCCTGGTACAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	ras	FBgn0003204	FBtr0071494,FBtr0071495	1	2	3	100	X	10639925	10639943	CAGACAAAGAGTACCACCG		59	10640006	10640117	AGAAAGTCGTTGTAGGTGAG		59	NA	
Drosophila melanogaster	50	CG1889	FBgn0030164	FBtr0071409	2	1	3	164	X	9859800	9859882	GATTGTAGCCTAGACATTGAG		57	9860008	9860026	GTTTCTGACCTTCTGATCG		57	NA	
Drosophila melanogaster	50	Hex-A	FBgn0001186	FBtr0071361,FBtr0071362	2	2	2	60	X	9481077	9481095	GCCATACTCAATGACACCA		59	9481119	9481137	TGCAGTTGTGATTCTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trxr-1	FBgn0020653	FBtr0071168,FBtr0071167,FBtr0071169	3	3	3	61	X	8140427	8140445	ACATCAAGTCCGTCAACTG		59	8140468	8140558	GATGTACTCCACTTTCTTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	GIIIspla2	FBgn0030013	FBtr0071159	2	1	1	107	X	8052053	8052071	TGGAACGTACAACGATCTG		59	8052140	8052160	AAGAGATCATAGCGATTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15327	FBgn0029967	FBtr0071144	3	1	1	92	X	7772696	7773888	TTATCTTGGAACTTGTCACC		57	7772623	7772642	TCGGTGGATATAGATTTCGA		57	NA	
Drosophila melanogaster	50	CG18155	FBgn0029945	FBtr0071051	1	1	1	66	X	7223511	7223529	GTCTGGGCATTCAGATCTC		59	7223639	7223660	GAGCACAAGTATGTTACATTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	inx7	FBgn0027106	FBtr0071035,FBtr0071034	3	2	2	100	X	6886273	6886291	ATTCTGTGGTTCTGGTACG		59	6886121	6886211	CGGGTAAATGTGACATTTCTG		59	NA	
Drosophila melanogaster	50	CG14442	FBgn0029893	FBtr0070988	1	1	1	60	X	6587150	6587169	GAAAGCTGAACGATTATGCC		59	6587109	6587127	ACAACATGCTTCAGTACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34417	FBgn0085446	FBtr0112705,FBtr0112704	3	2	5	86	X	6481126	6482107	CAGGAATATGAGAACGTCCA		59	6482155	6482174	CAAGAAATGGTGTATCAGCG		59	NA	
Drosophila melanogaster	50	CG33669	FBgn0053669	FBtr0091648	1	1	1	60	X	6293623	6293641	ATTGAAGACGATGTCGAGG		59	6293581	6293599	TAACTACTGCACCACATCC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	mof	FBgn0014340	FBtr0070829	3	1	1	60	X	5768536	5768554	GCAGATCACAATCAAGGAG		58	5768494	5768512	GTAGATAATGTCGTCGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mcm3	FBgn0024332	FBtr0070762	1	1	1	182	X	5219595	5219613	CTATCGCAATCCCAAGGAG		59	5219833	5219851	ATGAACTCCACGGATAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	snf	FBgn0003449	FBtr0070748	3	1	1	96	X	5203546	5203565	GTGATCTTCAAGGAGATCGG		59	5203624	5203642	ATTTGGAGTAGGCGATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bi	FBgn0000179	FBtr0070672	1	1	1	118	X	4345064	4372194	GTAAGTACTACGATCCTGAACTC		59	4372272	4372290	GTCTCCTTGAAGACGTACG		59	NA	
Drosophila melanogaster	50	norpA	FBgn0004625	FBtr0100671,FBtr0100670	3	2	4	108	X	4247551	4247569	GAACTGGATAAGCGATCCC		59	4247641	4247989	CATCTAGCCAGATCTTGGC		59	NA	
Drosophila melanogaster	50	CG32776	FBgn0052776	FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630	2	4	4	88	X	3791673	3795151	CCTGAGTCTCGATGATGAC		59	3791603	3791623	CGGGATGATCAATAATCTCCA		59	NA	
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070522,FBtr0070511,FBtr0070514	3	14	14	87	X	3232771	3232789	CTACCAGAGCATGATACCG		59	3232840	3233011	AAGGGTTACTTGAAAGCGT		59	NA	
Drosophila melanogaster	50	phl	FBgn0003079	FBtr0112818,FBtr0111025,FBtr0070401	1	3	3	104	X	2236288	2236306	TTGAAACACAATCGTCCCA		59	2236374	2236460	CTCCGCCAGAATATTCCAG		59	NA	
Drosophila melanogaster	50	ewg	FBgn0005427	FBtr0100577,FBtr0100579,FBtr0089441,FBtr0089442	1	4	8	172	X	165636	166462	ATGTTGATTACACCACGCA		59	165420	165438	AACGGTTTGAATGGTAGCA		59	NA	
Drosophila melanogaster	50	RhoGAP1A	FBgn0025836	FBtr0112920,FBtr0112919	2	2	2	81	X	31080	31099	CCATATTACGCACCATTTCG		59	31143	32455	GCCGAAACTAAGTTCTTGC		59	NA	
Drosophila melanogaster	50	CR42195	FBgn0085828	FBtr0114286	1	1	1	110	U	4085918	4085936	CTGTTCTGCTTTCATTGGT		58	4085826	4085844	TTAGTCTTAAGACGGTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sphinx	FBgn0083990	FBtr0111044,FBtr0111045	3	2	3	60	4	997703	997722	CCACAGGAACTACAATACCA		59	997745	997763	AATCTGTTGTAGATGCAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0100344,FBtr0100346,FBtr0100343,FBtr0089327	2	4	7	193	4	1128890	1128908	CGTCTATGCTTTACGACAG		58	1129194	1129748	GTCAAATGCTAGAGCTGTG		58	NA	
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	3	8	8	80	4	671648	672941	TAACAGCACAGATTGATGGT		59	671587	671605	TCAAATACGGGTGAAAGCT		59	NA	
Drosophila melanogaster	50	CG1674	FBgn0039897	FBtr0089118	2	1	4	80	4	259799	259817	ATACTGATCGACAAACCGA		58	259861	260954	CACATTAGCGGATTCTTGG		58	NA	
Drosophila melanogaster	50	ci	FBgn0004859	FBtr0089178	3	1	1	82	4	72690	72708	GAATTCCCGGATACATGGA		58	72564	72645	ACAATTGACATAGGGATCGT		58	NA	
Drosophila melanogaster	50	RNaseP:RNA	FBgn0046696	FBtr0085775	1	1	1	60	3R	27043362	27043381	CAGTTGCAAACTAGCATCTG		59	27043321	27043342	CAATGGTTTGTGGAGTAATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1638	FBgn0039855	FBtr0113315	2	1	1	87	3R	27416803	27416821	ATCAACTTTAGAGGCTTCG		57	27416931	27416950	CTTTCAGGTGCCTATTACAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11337	FBgn0039846	FBtr0085812,FBtr0085811	1	2	3	80	3R	27230185	27230203	GAGGAAGGAGAGGAATCCA		59	27230067	27230141	TCATGTTACGTCCATTGCT		59	NA	
Drosophila melanogaster	50	CG15543	FBgn0039799	FBtr0085700	1	1	1	64	3R	26568791	26568809	GGATGGAGTGACAGATGTG		59	26568837	26568855	ATATCTCTACGCCGATCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31016	FBgn0051016	FBtr0085668	2	1	1	85	3R	26432698	26432716	AATACCATGAGGTGATGGG		58	26432765	26432838	GATGGATACATTGCCACTG		58	NA	
Drosophila melanogaster	50	alph	FBgn0086361	FBtr0085444	3	1	5	196	3R	25420045	25420066	CAAATCGAGAAGATCACAAGAG		59	25423191	25430245	GAGATTCCATTGCCTTCAC		58	NA	
Drosophila melanogaster	50	CG11874	FBgn0039634	FBtr0085416	3	1	1	81	3R	24936989	24937092	GACTGGATGATGAATTCAAGG		58	24936928	24936946	AATAGGTTTACATCGCGCT		59	NA	
Drosophila melanogaster	50	Sirt7	FBgn0039631	FBtr0085364	1	1	1	60	3R	24883840	24883860	GTCCAGCATACAGATAAAGAG		57	24883882	24883900	TTCGTTATCGTTCTCTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ssl2	FBgn0041780	FBtr0085343	1	1	1	83	3R	24857891	24857909	AGTCGGTTCAACCTATCAC		58	24857771	24857789	CTAAACCCACTGGATAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12558	FBgn0039599	FBtr0085311	3	1	1	60	3R	24616787	24616805	ATTGATCTCTGCGAGTCAC		59	24616829	24616847	GCTGTGACATGTACATGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5484	FBgn0039450	FBtr0085037,FBtr0085039,FBtr0085038	1	3	3	88	3R	22544580	22544653	ATGCATAAGGATTGGTCCC		59	22544705	22544723	GTGGGCAGATAGAGATCTG		58	NA	
Drosophila melanogaster	50	CG31084	FBgn0051084	FBtr0085007	3	1	1	96	3R	22253826	22253844	AATACAGTTACACAGCGGG		59	22253996	22254014	TGTAATAACGGCAGCAGAG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14544	FBgn0039407	FBtr0084969	1	1	1	159	3R	21885844	21885862	CTTCGTCACCGTCTATCAC		59	21886660	21886678	AAACGAACAGAAACGACCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14543	FBgn0039404	FBtr0084968	1	1	1	60	3R	21882776	21882797	GAATTGAGTAAACTTCCTGCTG		59	21882816	21882836	TGTAGGTGATCTTAACATCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LpR1	FBgn0066101	FBtr0113480,FBtr0084926,FBtr0084925,FBtr0113481,FBtr0113479,FBtr0113482	3	6	6	136	3R	21567978	21567996	CAACTCGATGAACTTCGAG		58	21567719	21567878	CTATGACGGGTGAGTACTC		58	NA	
Drosophila melanogaster	50	CG4685	FBgn0039349	FBtr0100571,FBtr0084891,FBtr0100570,FBtr0100569	2	4	4	192	3R	21452227	21452245	GATTCCAGCAATGCAAAGG		59	21451877	21452071	GTTTGTGCCACTTCTTGAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12250	FBgn0039345	FBtr0084894	1	1	2	112	3R	21434507	21434594	GTTAAGAAAGAATCTGGTACCG		58	21418574	21418595	CTCCAACAAGTGTTATGAACAG		59	NA	
Drosophila melanogaster	50	msi	FBgn0011666	FBtr0084881,FBtr0084882	1	2	2	133	3R	21425813	21425831	CCTCATATCACAGAACCCA		58	21425928	21426005	AGTAGGGTGCATATCTGAC		58	NA	
Drosophila melanogaster	50	dan	FBgn0039286	FBtr0084803	2	1	1	60	3R	21017557	21017577	CAACTTCGTTTCCTAATAGCC		59	21017598	21017617	ATTTCTCGATCATCGGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625	1	8	17	81	3R	20521108	20521126	GACGCTGATCAAGAAATGC		59	20521842	20528756	ACGAGTGATATCACCTAAGTC		58	NA	
Drosophila melanogaster	50	cav	FBgn0026257	FBtr0084557,FBtr0084558,FBtr0084556	3	3	4	84	3R	20048170	20048188	TTGATTCTATGGATGCACG		57	20048297	20048315	AAAGCTCCTTTACCTCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5510	FBgn0039160	FBtr0084576	1	1	1	94	3R	19993858	19994206	TGAACGTAAATCACGATGAG		58	19993783	19993801	CTTGGGATCTTCTTTGTGC		58	NA	
Drosophila melanogaster	50	Pli	FBgn0025574	FBtr0112908,FBtr0084527,FBtr0112907	3	3	3	94	3R	19691346	19691364	GAATCTCCCATACTGGCTG		59	19688922	19691288	AAGTAACCATTGTAGCCGA		58	NA	
Drosophila melanogaster	50	CG10168	FBgn0039087	FBtr0084418	2	1	1	60	3R	19362917	19362935	ACTCGACAGCATACTAACC		58	19362875	19362893	AAAGATCAGCGATCCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34111	FBgn0083947	FBtr0110800	2	1	1	104	3R	19067707	19068051	GTTCATCTAGTCTCTGGCG		59	19067621	19067639	TGATCCCATTGAGCATCTG		59	NA	
Drosophila melanogaster	50	CG31156	FBgn0051156	FBtr0100546	3	1	2	98	3R	18436300	18436318	AATGTCACTTTCGTGTTGC		59	18435186	18436240	TCACATTCTCCGACAATAGAG		59	NA	
Drosophila melanogaster	50	CG34376	FBgn0085405	FBtr0112609	2	1	2	270	3R	18283136	18283154	AACGAACTGTATATGCCCA		58	18285752	18285770	TGTTGGTCACGATTATGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7059	FBgn0038957	FBtr0084221,FBtr0084219,FBtr0084220	1	3	3	138	3R	18217576	18217650	CACATTGAGGGAATCTCCA		58	18217750	18217770	GCCTAATATACTCCTGATCCC		58	NA	
Drosophila melanogaster	50	sar1	FBgn0038947	FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208	1	5	5	60	3R	18184316	18184335	CTTCACTACATTCGACTTGG		58	18185254	18185272	GAAGTAGTCCTTCCAGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	fit	FBgn0038914	FBtr0084153	1	1	1	60	3R	17710120	17710139	GGTGATTCTACTTCTTTCGG		57	17710079	17710099	CTCAGACCAACGAATATTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	C15	FBgn0004863	FBtr0084111	3	1	1	181	3R	17328255	17328273	GTATCCGCATCTCTATCCC		58	17332879	17332897	GATTCTGGTAGGGATGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	AnnIX	FBgn0000083	FBtr0089517,FBtr0089520,FBtr0089518,FBtr0089519	2	4	4	243	3R	16893207	16893794	TACTACCCATTCAAGTGCA		58	16894001	16894019	TAACATCCTCGAATTTGCC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Mvl	FBgn0011672	FBtr0089521,FBtr0089522	3	2	3	185	3R	16881620	16881699	TTTGTTAATGGACTGGGCA		59	16881390	16881408	AGCCATGTGTATCACAAGG		59	NA	
Drosophila melanogaster	50	GluRIIE	FBgn0051201	FBtr0110837	1	1	1	80	3R	16473219	16473298	TTCTCTATGAGTCAGCCGA		59	16473157	16473175	CCGTTATTACAGTTCCGCT		59	NA	
Drosophila melanogaster	50	ATPsyn-d	FBgn0016120	FBtr0083728,FBtr0083727	1	2	2	91	3R	14921153	14921171	AATCCTCGATCAACTGGTC		59	14921226	14921244	ATAGATGTCCGACTTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34283	FBgn0085312	FBtr0112479	2	1	1	60	3R	14547829	14547848	TACAACCCTAGTCTTCACTG		58	14547788	14547806	GTGTAGCTCCATGTATGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083641,FBtr0083643,FBtr0083645	2	3	13	91	3R	14340833	14340851	GAACATCGAAACGGATGTG		59	14261499	14340778	GGTCAGTGTTGTACCTAGG		58	NA	
Drosophila melanogaster	50	CG7146	FBgn0038593	FBtr0083601	2	1	1	119	3R	14099101	14099178	TAGATCTGGTCTGGGATGAG		59	14099001	14099020	ATTTCGTCTTCTGTAGCTCG		59	NA	
Drosophila melanogaster	50	CG5873	FBgn0038511	FBtr0083442	2	1	1	131	3R	13261668	13261686	TACCATCAGTTTGGTGAGC		59	13261780	13266665	GTTGTACGGGTTTAAAGTGC		59	NA	
Drosophila melanogaster	50	Keap1	FBgn0038475	FBtr0083423,FBtr0083424,FBtr0083422	1	3	3	81	3R	12901902	12901979	AAATTTCACTCAGGTGTGC		58	12901839	12901857	TTCATCCCTTCGTATCAGG		58	NA	
Drosophila melanogaster	50	mRpS11	FBgn0038474	FBtr0114468	2	1	3	101	3R	12898897	12898957	ATCACAAAGTATCCCTCTTTCC		59	12899019	12899037	CTTGAGCTGCTATGTTGGT		59	NA	
Drosophila melanogaster	50	CG4009	FBgn0038469	FBtr0083430	1	1	1	104	3R	12860117	12860135	ATTTCGCTCACGAAATTCC		58	12859973	12859991	CATGGTACTCCAAGGTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Irc	FBgn0038465	FBtr0083371	3	1	1	85	3R	12832407	12832483	GCATTATCTCTGAGCAATTCG		59	12832529	12832548	ATATTGCTCCACCAGTTCAG		59	NA	
Drosophila melanogaster	50	CG31498	FBgn0051498	FBtr0083339	3	1	1	76	3R	12490632	12490650	AAGCTGTTTCATATCTGCG		58	12490690	12490708	GTTTCCGTCTAATGAGCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333	2	6	8	138	3R	12118541	12119712	CTATTAGGATCACATGCCGA		59	12119813	12119831	GGGCGCAAATATTGAAGAG		59	NA	
Drosophila melanogaster	50	CG34276	FBgn0085305	FBtr0112471	3	1	1	91	3R	11752006	11752024	CTGCAGCAGAGTTATTCGA		59	11752148	11752167	GAGTTGTAGAACCAATTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arpc3A	FBgn0038369	FBtr0083181	3	1	2	60	3R	11660795	11660923	CGTACGAAATCAAGTCCGA		59	11660946	11660965	TCTGTTATGTAGAGCGTCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	1	7	12	158	3R	11122418	11125004	GAAATACGATGAGGTTGCC		58	11126525	11126543	TTCTCCTCAGAGACTTCCA		59	NA	
Drosophila melanogaster	50	stumps	FBgn0020299	FBtr0112893,FBtr0082958	1	2	3	113	3R	10418460	10418478	GAATTCTTGCAACGAGACC		59	10418555	10418734	GATTTGCTACTTGTTGGCG		59	NA	
Drosophila melanogaster	50	CG7987	FBgn0038244	FBtr0082978,FBtr0082979	1	2	2	75	3R	10400292	10400310	GTAATCACAGACGACTGGG		59	10400170	10400188	TAATCCCAGCTATCTGCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	su(Hw)	FBgn0003567	FBtr0082945,FBtr0082946	1	2	2	93	3R	10132881	10132899	AGAAGATCGAGAAGGATGC		58	10132740	10132824	TTAATGTGACCCAGATGGA		57	NA	
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	2	8	8	284	3R	9504400	9504475	AACACGACGTAAATCAGGA		58	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Past1	FBgn0016693	FBtr0082655,FBtr0082654	3	2	2	165	3R	8529509	8529527	AGTCGATGGCAAGATATCC		58	8529717	8529737	CAGCTTGACGTTGATTAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14394	FBgn0038079	FBtr0114501,FBtr0113226	2	2	6	60	3R	8522002	8522020	GTCTGTCCATAGTCATGCA		59	8522808	8522827	TTGATGAGGGACTGAATGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5509	FBgn0038054	FBtr0082633	2	1	1	60	3R	8278547	8278566	GTCAGAAACTGAGTGACCTC		59	8278586	8278607	TCGTACGGACTAAAGTTAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31116	FBgn0051116	FBtr0082527,FBtr0082526	1	2	5	124	3R	7628396	7629444	CTACTATATGTATGGTCGCTATACC		59	7628048	7628314	CCAGCAGTTCCTTATTCCT		58	NA	
Drosophila melanogaster	50	Sbf	FBgn0025802	FBtr0082530,FBtr0082529	2	2	2	81	3R	7617739	7617819	GCTTTATGCATTGGGAGAG		58	7617676	7617696	ATAGTCTACGGGAATGAAGTC		58	NA	
Drosophila melanogaster	50	CG14712	FBgn0037924	FBtr0082418	1	1	1	117	3R	7455337	7455355	GAATCGACCCATATTGCAC		58	7455436	7455517	CTGTTGCGTATCTTCAGTG		58	NA	
Drosophila melanogaster	50	CG14711	FBgn0037922	FBtr0082416	3	1	1	87	3R	7449944	7449962	ATATCTACTCCAAGCGAGC		58	7450013	7450093	GATTTGCTGCATATTTCGC		58	NA	Nonspecific
Drosophila melanogaster	50	CG6791	FBgn0037918	FBtr0082459	2	1	2	159	3R	7412223	7412241	GATACGCTATTGAGCACCA		59	7411170	7411188	ATTAGTCGAAGCAGTGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	wkd	FBgn0037917	FBtr0082414,FBtr0082413	3	2	2	190	3R	7409610	7409628	AAATGTTTCTCGACGAGCA		59	7409782	7409858	GTCCTGCAGGTATACATCG		59	NA	
Drosophila melanogaster	50	nocturnin	FBgn0037872	FBtr0113220,FBtr0113218,FBtr0113219	3	3	3	96	3R	7032963	7033087	ACATCCTATCACAAACTCTCG		59	7033145	7033163	TGGACAATCAGGTACTTGC		59	NA	
Drosophila melanogaster	50	CG6465	FBgn0037818	FBtr0082323	2	1	1	81	3R	6501868	6501886	CTCCCTTGCTAATGGTCTG		59	6501748	6501823	CATTTGTGGAGGTTAGCCT		59	NA	
Drosophila melanogaster	50	mthl11	FBgn0045443	FBtr0082247	2	1	1	137	3R	6227923	6227942	TATTATCGTGTGGAGCTCTG		58	6228039	6228119	GACCATCCATTGGTAAATATCC		58	NA	
Drosophila melanogaster	50	CG31406	FBgn0051406	FBtr0082235	1	1	2	249	3R	6174761	6174779	TAAGAAATTGCCGACTGCA		59	6175535	6175553	CGACTTCTTTAGGCTTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34303	FBgn0085332	FBtr0112499	2	1	1	91	3R	5977110	5977128	ATGTTAATCACACCTGCCC		59	5976968	5976986	TGGGAATTTCGCTAAGACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3940	FBgn0037788	FBtr0082179	3	1	1	105	3R	5938511	5938529	CATTTAATCGCCCTCTCCT		59	5943393	5944014	TTGGAAATGGCTCATCCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG16817	FBgn0037728	FBtr0082082	2	1	1	63	3R	5504316	5504334	GCAATGACTTGATCTACGT		57	5504361	5504450	TCCGTAACTTTGTGTTCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9393	FBgn0037710	FBtr0082113	2	1	1	88	3R	5387716	5387909	GATTTACAACCAGCTAACGAC		59	5387648	5387666	ATTAGTCTAGGCCCTCCTC		59	NA	
Drosophila melanogaster	50	Rlb1	FBgn0014022	FBtr0082062	2	1	1	60	3R	5340043	5340062	AAGAAGAACCACAACTTGAC		58	5340083	5340103	GTAATGAAGAAGGGATCAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16749	FBgn0037678	FBtr0082057	1	1	1	177	3R	5157174	5157195	CTATGCCAACGATATTTCACTG		59	5156955	5156973	TGTGGATTGGATGTATCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11977	FBgn0037650	FBtr0081961	3	1	1	61	3R	4823639	4823657	CCAACAAGAAGCACATCAC		59	4823744	4823763	GTGATTTCTACCGCATTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pif1A	FBgn0027540	FBtr0091714,FBtr0091715	2	2	2	62	3R	4611483	4611502	AATGAACTCCTTGAGTTTCG		58	4610303	4611458	GGTGCTCTCCATCTTATCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Ubc84D	FBgn0017456	FBtr0081552	3	1	1	60	3R	3344907	3344925	CATCGAAATCAACTTCCCG		58	3344865	3344885	CGTCTTGAATAGGATCTTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alphaTub84B	FBgn0003884	FBtr0081639	1	1	1	60	3R	2913692	2913710	CCCTTAACGTGGATCTGAC		59	2913734	2913752	AAGTGAATACGTGGGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1939	FBgn0037469	FBtr0081638	1	1	1	60	3R	2908468	2908486	AAGATCGTCTGTGTAACCT		57	2908581	2908599	CATTGCGGGCTATTAATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1137	FBgn0037454	FBtr0081705	2	1	1	118	3R	2385095	2385113	CTGATAAGGAGGCCTACCT		59	2384936	2384955	TTTATTGGCCTTTACCAGAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG1041	FBgn0037440	FBtr0081734,FBtr0110774	2	2	2	106	3R	2198948	2199033	GTGGAATTTGACCAAGAACTC		59	2198862	2198880	CCAAGGGAATGGTCTTCTG		59	NA	
Drosophila melanogaster	50	jagn	FBgn0037374	FBtr0078624,FBtr0078626,FBtr0078625	2	3	3	98	3R	1605869	1605888	ACGAGACAGACATCTTTGTG		59	1606011	1606029	AGTACAGCGTAAATCCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	plx	FBgn0004879	FBtr0078718	1	1	2	92	3R	1533897	1534233	ATGGATAACATACCCAAGCAG		59	1534287	1534305	CACTAGGAACACCATCGTC		59	NA	
Drosophila melanogaster	50	CRMP	FBgn0023023	FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686	2	4	4	113	3R	1400049	1400129	CTACATCAAGAATGGCGAG		57	1400402	1400420	CCAGGTATCGTTATTTCCG		57	NA	
Drosophila melanogaster	50	Itp-r83A	FBgn0010051	FBtr0078686	2	1	2	93	3R	1356981	1356999	CTAAGACTTACGAAGACGC		57	1357055	1357390	CACCTTCGGAATCAATATCC		58	NA	
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0110933	2	1	15	145	3R	1119479	1119798	GAAAGTATTCTCAAGCTCGC		59	1119353	1119371	CATAGGTCATGTGACCCTC		59	NA	
Drosophila melanogaster	50	Gnf1	FBgn0004913	FBtr0100159	1	1	2	111	3R	733740	733758	GAAGACTCTGGATGTGGTC		59	733832	733913	CAAATTGTGATTGGTCACGT		59	NA	
Drosophila melanogaster	50	CG41464	FBgn0084025	FBtr0111216	2	1	1	82	3R	283653	283786	CTAACTCTGAGAGTATCAACGG		59	283829	283847	GATGTTGGACGCTAATCCA		59	NA	
Drosophila melanogaster	50	CG9809	FBgn0037248	FBtr0078946,FBtr0078945,FBtr0078947	3	3	3	102	3R	251619	251639	GATGAATTACGCTATGTGGAC		58	251471	251555	GTTGTTCCGGCTTATTCTC		58	NA	
Drosophila melanogaster	50	CG11489	FBgn0025702	FBtr0112914,FBtr0078496	1	2	2	87	3L	22272066	22272084	TATTTGACAACCGGTTTCG		58	22272134	22272216	TTCTCATCTTTGAGATCCCG		59	NA	
Drosophila melanogaster	50	CG7133	FBgn0037150	FBtr0078485	2	1	1	60	3L	22067406	22067424	TACGAAGATCACTACCAGG		57	22067364	22067382	CCTTAATCTCACTGTCGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32448	FBgn0052448	FBtr0078449	3	1	1	129	3L	21821272	21821290	TTAGTGGAGAAGACGACGA		59	21821095	21821179	TAATCTTGTTCGGCTTGGT		59	NA	
Drosophila melanogaster	50	Syn1	FBgn0037130	FBtr0078450,FBtr0078451	3	2	2	169	3L	21739907	21739925	CTTCTTTCTGTACGACTGC		58	21739704	21739774	CCATGTCCAGTTCAATCTC		57	NA	Nonspecific
Drosophila melanogaster	50	CG7597	FBgn0037093	FBtr0078357,FBtr0078358	3	2	2	116	3L	21513429	21513511	TTACGGACAGGTTTACAAGG		59	21513590	21513608	TTGATTTCACGAACAGCTG		58	NA	
Drosophila melanogaster	50	CG33287	FBgn0053287	FBtr0078331	1	1	1	80	3L	20963060	20963079	ATTGAAAGCCTCTTTGATCG		58	20962786	20963020	GACAATCATTAGTGGTACTTCC		58	NA	
Drosophila melanogaster	50	Gr77a	FBgn0045474	FBtr0078281	1	1	1	60	3L	20731349	20731367	CACTGTTAAGCAACTCAGG		58	20730841	20730861	CTCCACATTCTTCAGATACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17233	FBgn0036958	FBtr0074852,FBtr0074851,FBtr0074850	1	3	3	60	3L	20228032	20228050	CTTCTATCGCAACATGTCG		58	20227930	20227951	GAGGTAGAGTTTCTTAGTTTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14186	FBgn0036935	FBtr0074870	3	1	1	83	3L	20094090	20094336	CCGACTTTAATCGCAATGG		59	20094025	20094044	ATATGTTCGAGATGAGCAGC		59	NA	
Drosophila melanogaster	50	CG7757	FBgn0036915	FBtr0074892	1	1	2	124	3L	19904510	19904529	TATACTGACCCAGGATCTGG		59	19904616	19904688	GTTTCAAGGGCTCATTTGG		59	NA	
Drosophila melanogaster	50	Su(Tpl)	FBgn0014037	FBtr0074920	2	1	1	295	3L	19889938	19890020	TAATCAATTTACCGCCTGC		58	19887745	19887763	TAATTGCCGGTCGATAGTG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG8743	FBgn0036904	FBtr0074952	1	1	1	277	3L	19709316	19709334	GCTGAGATGTACAACTGTC		57	19708917	19708935	GTATCACAACGTTGTAGGT		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	asf1	FBgn0029094	FBtr0074947	1	1	1	60	3L	19612400	19612419	AGATGATCTATGTAGGCTCG		58	19612442	19612460	TATATGGTGTCCAGCACCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9279	FBgn0036882	FBtr0074976,FBtr0074975	1	2	2	80	3L	19535274	19535409	CAGCTTCCAAAGAATCCAG		58	19535212	19535231	AGACAAGGTTACTTCTCCAG		58	NA	
Drosophila melanogaster	50	CG34255	FBgn0085284	FBtr0112449	1	1	1	106	3L	18863646	18863717	TTCAGCGGAAACTAATCGA		59	18863787	18863805	TTGATCAGTGGTTACGAGC		59	NA	
Drosophila melanogaster	50	CG9715	FBgn0036668	FBtr0075330	1	1	1	106	3L	16842400	16842480	AAAGAATGATGACAGGGCA		59	16842550	16842568	CATCTCAAAGCAGTTGGAG		58	NA	
Drosophila melanogaster	50	tra	FBgn0003741	FBtr0075364,FBtr0100244	3	2	2	137	3L	16583384	16583460	GATTTCTACGGGATGTCTGG		59	16583266	16583284	GTTTCTGTAGCCAAATCGC		59	NA	InUTR
Drosophila melanogaster	50	CG34247	FBgn0085276	FBtr0112441	1	1	1	87	3L	16254433	16254451	AATCGCATCTTTACCACAG		57	16254364	16254382	ATGTACTCATAGGTCAGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13055	FBgn0036583	FBtr0075482	3	1	1	160	3L	16244436	16244454	CAAATCCGCATCGAATGTC		59	16244294	16244312	GATATGTGTAGGAGACGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5027	FBgn0036579	FBtr0075457	1	1	1	165	3L	16222732	16222807	AAGGAGTTCAAGGTTCGTG		59	16222936	16222954	TTAGCATGTCCACACTCTC		58	NA	
Drosophila melanogaster	50	Pgm	FBgn0003076	FBtr0075492	1	1	1	128	3L	16119538	16119556	CAGATCCTGTCGACAAGTC		59	16119362	16119447	AATCAATGTACAAGCGAACG		59	NA	
Drosophila melanogaster	50	CG17029	FBgn0036551	FBtr0075514	2	1	1	60	3L	15971067	15971086	GTGATTGCCTACGAGATCTC		59	15971109	15971127	GCTTCACATTCTTGTCCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ind	FBgn0025776	FBtr0075668	1	1	1	60	3L	15036334	15036352	CTGAAGAACCACTCTTCGG		59	15036292	15036310	CGGCATAATCGTTGATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8783	FBgn0036397	FBtr0075785	3	1	2	193	3L	13994634	13994652	GTATCCGTACCAGACTCTC		58	13994400	13994418	GTTTAACAGCAAACAGAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17364	FBgn0036391	FBtr0075789,FBtr0075788	3	2	2	92	3L	13976266	13976284	TCAGCAAGACGAAGTATCC		59	13975941	13976211	TAAGCGGTATTCCTGTATCG		59	NA	
Drosophila melanogaster	50	CG32107	FBgn0052107	FBtr0075937	3	1	1	60	3L	12853421	12853439	CATCCATTCGCTTAGTGGT		59	12853379	12853400	TCCGAATAGATCGATTTATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18815	FBgn0042138	FBtr0076105,FBtr0076104,FBtr0076103	2	3	3	80	3L	11622536	11622554	AATGTGACGTTCAAGACGT		59	11622598	11622692	ACTGATGATGTCCTTGACG		59	NA	
Drosophila melanogaster	50	CG14137	FBgn0036178	FBtr0076144	1	1	1	73	3L	11592814	11592832	CACAGCCTACTACAGAAGG		59	11592759	11592777	ATATGTTCGGGAGTACGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mnf	FBgn0036134	FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228	2	5	5	143	3L	11109449	11109535	ACAATACACAGGATCTGTTCC		59	11109326	11109344	ACGAATAAATGCCCGAGAG		59	NA	
Drosophila melanogaster	50	Mnf	FBgn0036134	FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228	2	5	5	143	3L	11109449	11109535	ACAATACACAGGATCTGTTCC		59	11109326	11109344	ACGAATAAATGCCCGAGAG		59	NA	
Drosophila melanogaster	50	CG18628	FBgn0036091	FBtr0076256	3	1	1	204	3L	10632900	10632918	TGAAGTTCCTACTCGTGTG		58	10633149	10633167	CCAAATGGAGATGTCTAGC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG8072	FBgn0036070	FBtr0076295	1	1	1	60	3L	10145718	10145738	GCTCGTTTGCTATTATAGCTC		58	10145759	10145778	AATGCCTTCTTCGTATAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bol	FBgn0011206	FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538	2	4	4	130	3L	9101077	9101096	TATACCCATGGATCAGTTCG		58	9100463	9100724	TGGTGGGTACATTCATTGG		59	NA	
Drosophila melanogaster	50	CG5288	FBgn0035950	FBtr0076553,FBtr0076555,FBtr0076554	1	3	3	80	3L	8977957	8977977	CTTCAACTCAGAAATCTCGAG		58	8977752	8977915	CTTTGGAAGCTCGATTCTG		58	NA	
Drosophila melanogaster	50	CG13667	FBgn0035890	FBtr0076610,FBtr0076611	3	2	2	60	3L	8399338	8399356	CGATGTACTCGATGTTCAG		57	8399379	8399398	AAGGTCGAAGAATGTTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Atg18	FBgn0035850	FBtr0076693,FBtr0076691	1	2	3	88	3L	8180667	8180921	AGAACATAACTTCCCTGGC		59	8180973	8180991	GTAGATCTTGTCCAGGGTC		58	NA	
Drosophila melanogaster	50	CG7942	FBgn0035838	FBtr0076686	3	1	2	109	3L	8115188	8115206	AGTACCTGGATATGTGCTC		58	8115334	8115352	CTCCTGCAGGTAATTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13681	FBgn0035832	FBtr0076679	2	1	1	76	3L	8065334	8065352	GAACTCATCGGATATCCGG		59	8065392	8065410	ACTTACCACTCATCACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8209	FBgn0035830	FBtr0076753	1	1	1	256	3L	7970266	7970284	GAAGAAGATCGTTGAGCAG		58	7970560	7970578	TTTCCTGTAGTGTTGAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112693	3	1	10	156	3L	7657049	7657067	CGAGAGCTATACGGTTGTG		59	7656408	7656930	TCTTTCGTGAAGGGTTTCTC		59	NA	
Drosophila melanogaster	50	mus312	FBgn0002909	FBtr0110926,FBtr0076840,FBtr0076839	1	3	3	81	3L	7323268	7323287	ATGAAGAGAAGTCCACTGAG		58	7323328	7323408	GATTTATAATCTTCCTTGGCGG		59	NA	InUTR
Drosophila melanogaster	50	Or65c	FBgn0041623	FBtr0077006	2	1	1	123	3L	6321948	6321969	GGATCCAAGGATGTTTATAGAG		57	6322052	6322128	ATTGGTTAAGTATAGCGCTG		57	NA	
Drosophila melanogaster	50	CG13293	FBgn0035677	FBtr0077050	2	1	1	138	3L	6080582	6080600	GTCTACACCAAGTTGTGGA		59	6080699	6080781	CGCTGGTTCTTAAGTAATAGTG		58	NA	
Drosophila melanogaster	50	vn	FBgn0003984	FBtr0077082	3	1	2	96	3L	5809797	5810649	CGAGGTCTATTGTAGGTGC		59	5807939	5807957	TATTTGGCCGTAGATTGCA		59	NA	
Drosophila melanogaster	50	CG10671	FBgn0035586	FBtr0077178	3	1	2	98	3L	5138318	5138336	TTAACGTCGTGGAGAACTC		59	5138179	5138197	TATCAAAGCCCTTCCACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1332	FBgn0035514	FBtr0073224	1	1	1	80	3L	4217341	4217359	ACAGAGATGGATCAATCGT		58	4217403	4217485	TCATTGTAGGATCGACCTG		58	NA	
Drosophila melanogaster	50	CG14983	FBgn0035479	FBtr0073170	3	1	1	61	3L	3949209	3949229	CAAGAGATCATTCTCGAGGAG		59	3949168	3949186	GATTCCAGTTGGGCTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PHGPx	FBgn0035438	FBtr0073068,FBtr0073066,FBtr0073067	3	3	4	214	3L	3328064	3328082	CTGGTGATCCTCAACTTCC		59	3328326	3328345	GTGAAGTTCCACTTGATTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	aly	FBgn0004372	FBtr0073006	1	1	1	95	3L	3026048	3026066	TAGATGTTTCGGAGGACGA		59	3025908	3025992	GGAAATTGTACAATCTCTTGCC		59	NA	
Drosophila melanogaster	50	zormin	FBgn0052311	FBtr0110858,FBtr0110856	3	2	4	136	3L	2125346	2125365	GATGTTAGCAGGGAGATCAG		59	2124604	2125249	CATTTGGTTCCGTATTGAGAG		59	NA	
Drosophila melanogaster	50	CG9184	FBgn0035208	FBtr0072726	1	1	2	183	3L	1322443	1322551	GAAGACCATTGAGGATCAG		57	1322278	1322296	GTAGCCATTGTAGTAGGGA		57	NA	
Drosophila melanogaster	50	CG9134	FBgn0035199	FBtr0072661,FBtr0072660,FBtr0072659	1	3	3	103	3L	1269166	1272974	TTCTTCAAGGCAAACTGGT		59	1273041	1273059	TGCTTCTCCAGTCTATCGT		59	NA	
Drosophila melanogaster	50	trio	FBgn0024277	FBtr0072648,FBtr0072646,FBtr0072645,FBtr0072649,FBtr0072644,FBtr0072647	1	6	6	80	3L	998874	998892	GAATACATAGTCAGTGCCC		57	998720	998831	CAAGTTACTCAGATCCAGAC		57	NA	
Drosophila melanogaster	50	CkIIalpha-i3	FBgn0025676	FBtr0072604,FBtr0072603	1	2	2	80	3L	709131	709151	GGTGAATTTACCGATGAAGAG		58	709015	709091	TTCAACAGTCTCCTTGATCTC		59	NA	
Drosophila melanogaster	50	mth	FBgn0023000	FBtr0072571	3	1	2	102	3L	344175	344196	GGTGGCTGACTATTTAAATTGG		59	343640	344113	TTTAGGATGGTTCCTCTCCT		59	NA	
Drosophila melanogaster	50	RhoGEF3	FBgn0035128	FBtr0089651,FBtr0089653	1	2	4	153	3L	300966	300984	AACTGAAAGTACGGATGTG		57	301101	301173	TATCATAGGTGCTACTGCC		58	NA	
Drosophila melanogaster	50	mri	FBgn0035107	FBtr0072481,FBtr0072480,FBtr0072482	3	3	3	241	3L	201532	201550	GATACGCTGTGGCATAGAG		59	201755	201831	GAATCGGATTTCCACTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Peb	FBgn0004181	FBtr0072454	1	1	1	60	2R	21063167	21063188	TTCGGATTTAGTTCACCTAGTC		59	21063128	21063147	CTAAAGGACCAAATTTCCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4806	FBgn0035048	FBtr0072332	3	1	1	112	2R	20554458	20554476	TTTCCTATCCTTCGACACG		59	20554307	20554325	CCTCTATACTGAACGCGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dat	FBgn0019643	FBtr0072255,FBtr0072254	3	2	2	157	2R	20043491	20044428	TTTCTTCAAGGATGAACCG		57	20044547	20044567	GCCTCATAAGTCCATTTAGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	yki	FBgn0034970	FBtr0072183,FBtr0072184	1	2	3	155	2R	19953829	19954696	AAAGCAGAATGAATCTGGG		57	19953609	19953627	TACCATTCCAAATCGTCAG		57	NA	
Drosophila melanogaster	50	CG30177	FBgn0050177	FBtr0072122	1	1	1	60	2R	19689583	19689601	GATCAATAACCGTCTGCTG		58	19689625	19689643	ATTCTTTGCAATCTGCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3502	FBgn0046253	FBtr0072039	1	1	1	106	2R	19233393	19233411	GATGAACCATCCTGGAAGG		59	19233188	19233323	GTTGAGGTCTGATCCTGAC		59	NA	
Drosophila melanogaster	50	CG3700	FBgn0034796	FBtr0071904	3	1	1	162	2R	18782509	18782590	GAGACGGATGAATCGAAGG		59	18782713	18782734	CTTCAGTATCATATCCAGGGTG		59	NA	
Drosophila melanogaster	50	Ugt58Fa	FBgn0040091	FBtr0071934	1	1	1	88	2R	18530877	18530895	ATAACGTTACCGAAACGGT		59	18530751	18530769	AAGATCAGCAAGGTTTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	bonsai	FBgn0026261	FBtr0071860	3	1	1	184	2R	18525695	18525713	CGATGAGATGGTCAAGGAG		59	18525918	18525938	AGTACTTGAGGAACTTCTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	wdp	FBgn0034718	FBtr0071849,FBtr0071852,FBtr0071851	1	3	4	133	2R	18188505	18195724	GTCTTATAGAAGATAAGACGCC		57	18188393	18188411	CAACCACAATGAGGAACAG		58	NA	InUTR
Drosophila melanogaster	50	CG30401	FBgn0050401	FBtr0071731	3	1	1	60	2R	17873721	17873740	AACATTAATGGTCATCCGGT		59	17873680	17873698	ATGTAGCTGCTGAATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30395	FBgn0050395	FBtr0071715	2	1	1	82	2R	17653339	17653357	AGATGGTGCTACTATCGGA		59	17653403	17653515	CTCCTGCTTCCTTTACTGG		59	NA	
Drosophila melanogaster	50	CG15676	FBgn0034651	FBtr0071668	1	1	1	60	2R	17559508	17559527	ATCCTGACAAGGAAGTTCAC		59	17559549	17559568	CTCACCCATCTGAATACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10440	FBgn0034636	FBtr0071692	1	1	1	92	2R	17449354	17449372	AAGACTTCTGATTGCCGAG		59	17449078	17449096	TCCAGCTGCTTAATCATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Acox57D-d	FBgn0034629	FBtr0071607	3	1	1	116	2R	17277626	17277645	GAGGAGGTCTACAATTCCAC		59	17277724	17277803	ATTGAATAGTCCTCCAGGC		58	NA	
Drosophila melanogaster	50	CG10795	FBgn0034626	FBtr0071609	2	1	1	72	2R	17271324	17271342	GAATGGCTATCACCTGGAC		59	17271270	17271288	ATAGAATCTATCCACGCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11110	FBgn0034535	FBtr0086231	2	1	1	146	2R	16529636	16529654	AGAAGATTATCAAGCGCGT		59	16529764	16529782	GTCCAAAGGTATTGCTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hil	FBgn0050147	FBtr0086256,FBtr0086255	3	2	2	98	2R	16502074	16502092	TTGCTTCAAATGCGTACAC		59	16500960	16502013	TGTGAACTGCAATAGACCTC		59	NA	
Drosophila melanogaster	50	CG13434	FBgn0034523	FBtr0086257	1	1	1	119	2R	16473904	16474127	AACTTGAGATTGCTATGGC		57	16473803	16473821	TAACTTTCTCGTACTGCGA		58	NA	
Drosophila melanogaster	50	CG9864	FBgn0034490	FBtr0086320	3	1	1	82	2R	16136023	16136041	ATTAACTGTGTTGGCACCA		59	16135894	16135977	TGATCGATTGTGTTCTCGT		59	NA	Nonspecific
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457	2	11	15	108	2R	15365201	15366256	TTCACTCTGGTCAAACCAG		59	15366328	15366346	TTGGAGAAGAAGCTCATGC		59	NA	
Drosophila melanogaster	50	cora	FBgn0010434	FBtr0086507,FBtr0086509	1	2	4	182	2R	15124300	15124318	TTCAATAGGACTCTGTCCG		58	15124561	15125668	CTTATCAGCATCCTTCTCCT		58	NA	
Drosophila melanogaster	50	CG30125	FBgn0050125	FBtr0086595	1	1	1	60	2R	14982815	14982833	GTGACCATCGATATTGTCC		57	14982773	14982793	GCTGAAATAACTCGTACTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5335	FBgn0034365	FBtr0086708	3	1	1	100	2R	14510049	14510067	CGATGAGAAGGCAGTAGTG		59	14510186	14510205	TGAATTGCTGGTTAAAGACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30115	FBgn0050115	FBtr0086716,FBtr0086717	2	2	2	60	2R	14442939	14442957	CAACAAGCAACAGAAGAGG		58	14442897	14442915	ACGACTTATATCGGGACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GstE5	FBgn0063495	FBtr0086673	2	1	1	60	2R	14292348	14292366	CATTATCGCGTATCTGGTG		58	14292390	14292408	CAGATCTCTGGGATACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	thr	FBgn0003701	FBtr0086825	2	1	1	82	2R	13752032	13752051	ATATTAATTGGAAACCGGCG		58	13751911	13751932	CATTGAGTATTTGACTACTCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Bap55	FBgn0025716	FBtr0086960	3	1	1	113	2R	13317310	13317329	TCTTTGACAATGCAATGCTG		59	13317157	13317234	TATTGCCACCAGTAACGAC		59	NA	
Drosophila melanogaster	50	GstS1	FBgn0010226	FBtr0087005,FBtr0100258,FBtr0087006	3	3	3	121	2R	12981866	12981885	CATTCTACCTGGAGAAGCTC		59	12981677	12981697	GACCATGTAGTTCATGTAGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6796	FBgn0034177	FBtr0087057	2	1	1	169	2R	12889886	12889967	GAAATGTTGGCTGAAGGAC		59	12890099	12890118	TCCATGTAGTCGTGTATAGC		58	NA	
Drosophila melanogaster	50	CG30461	FBgn0050461	FBtr0100249,FBtr0100251,FBtr0100250,FBtr0100252	2	4	4	60	2R	12883925	12883943	GGCATTTGCTATTGTTCCT		58	12883883	12883901	TACTGAGAATAAGCTGCCA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Amyrel	FBgn0020506	FBtr0087117	3	1	1	64	2R	12539132	12539150	CATTTGGCCTATCCCTACG		59	12539086	12539104	GTATCGTGGTCATCGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rrp42	FBgn0034065	FBtr0087206	3	1	1	142	2R	11903003	11903075	ACATCCTGATTCTGGAGTG		58	11903179	11903199	ATTGTCCGATATGATGAGGTC		59	NA	
Drosophila melanogaster	50	l(2)k05713	FBgn0022160	FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309	1	4	4	83	2R	11747749	11747767	GAACTTCCTCGAGATCCAC		59	11747609	11747702	ACTGCTCTAGATCTAGGCC		59	NA	
Drosophila melanogaster	50	CG8214	FBgn0034037	FBtr0087320	2	1	1	260	2R	11575755	11575773	ATAACACAGAGTTCGAGCA		58	11575449	11575467	GATCCATGTCCAGGATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	fus	FBgn0023441	FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343	1	4	6	110	2R	11555363	11559507	CAACTGGACAGATCGTAGG		59	11555271	11555289	TGTTATTGGTGACACTCGA		58	NA	
Drosophila melanogaster	50	CG30471	FBgn0050471	FBtr0087333	1	1	1	138	2R	11423919	11424004	CTTCTTTACCATCAGTGGCT		59	11424105	11424123	CAATCTCAGGTAGCGATGG		59	NA	
Drosophila melanogaster	50	CG34123	FBgn0083959	FBtr0114580,FBtr0110832,FBtr0114579,FBtr0110831,FBtr0110833,FBtr0113485	3	6	6	80	2R	11165813	11166764	GAACAAGAATCTGATTACCGTC		59	11165754	11165773	GTTAGGATGGTCTGATCCAG		59	NA	
Drosophila melanogaster	50	Tfb1	FBgn0033929	FBtr0087548,FBtr0087549,FBtr0087550	1	3	3	104	2R	10251345	10251363	TAACCAGCGATGAGTTCTG		59	10251489	10251507	TTATGTCAGCCAGAAAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	stj	FBgn0033870	FBtr0087631	3	1	1	80	2R	9697166	9697428	CTGATTCAAGCCAATCTGG		58	9697471	9697490	ATAATTGGCGATCGATTTGG		58	NA	
Drosophila melanogaster	50	Roe1	FBgn0014877	FBtr0087675	2	1	1	188	2R	9442024	9442042	GGACAAATACAAGCGTTCG		59	9442538	9442557	TTCTTCAAATCAGCATTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8768	FBgn0033769	FBtr0087871	1	1	1	151	2R	8579233	8579307	AGTTTAGCAAAGCCTTTGC		59	8579100	8579118	AAATCCGGATGATAGAGCT		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG8839	FBgn0033717	FBtr0087959,FBtr0087957,FBtr0087960,FBtr0087958	3	4	4	114	2R	8228118	8228136	TTCTTCTACCAAGAGTCCG		58	8227961	8227979	TCTGATTGCCGAACTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34233	FBgn0085262	FBtr0112427	3	1	1	257	2R	8170328	8170346	CTGATAAGTAGCTGGCGAC		59	8171529	8171547	AAATTTCTGCCAGGAGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sr-CII	FBgn0020377	FBtr0088004	3	1	1	110	2R	8096891	8096980	CAGCACATTACAGTTACCA		57	8096799	8096817	GACTATCAAAGCTGGATGC		58	NA	
Drosophila melanogaster	50	CG8889	FBgn0033675	FBtr0088026	3	1	3	147	2R	7914576	7914594	TTTACTACATGGCCCAGTC		58	7914333	7914409	CACTATGATGTGAGGCTGG		59	NA	InUTR
Drosophila melanogaster	50	tou	FBgn0033636	FBtr0088092,FBtr0088091	1	2	5	145	2R	7469246	7470530	TTATGAAAGCGAATTGCCAG		59	7468891	7469138	CTCGTAGCAGTACCAATCG		59	NA	
Drosophila melanogaster	50	CG7741	FBgn0033615	FBtr0088118	1	1	1	97	2R	7191260	7191336	TAAGCATATCACTGTTCCCA		58	7191396	7191414	GATTGGTGCAGATTTCACC		59	NA	
Drosophila melanogaster	50	CG12938	FBgn0033554	FBtr0088248	3	1	1	60	2R	6708896	6708915	CTTTGATCACTTTATGGTGC		57	6708855	6708873	CAAGTACGAAGGTATGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0088276	2	1	12	132	2R	6500313	6500331	CCGCACTATACGAATTTGG		58	6500427	6500499	TTAATGCATCTTTCTCGCC		58	NA	
Drosophila melanogaster	50	Cyp49a1	FBgn0033524	FBtr0088311,FBtr0088313,FBtr0088312	3	3	3	81	2R	6338171	6338266	GTAAAGGAAACTCTACGAATGC		59	6338111	6338129	GGTAACCATTGATGACAGC		58	NA	
Drosophila melanogaster	50	CG12134	FBgn0033471	FBtr0088388,FBtr0088389	2	2	2	60	2R	5859637	5859655	AGTAAACGTGTTCGATGTG		58	5859678	5859697	GTTGAAGGTGTTAAGCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1776	FBgn0033441	FBtr0088497	2	1	1	82	2R	5608220	5608240	CCAGAAGTTGTGAACTTTGAC		59	5607468	5608176	CCTGAGATGAGCACATAGC		59	NA	
Drosophila melanogaster	50	Updo	FBgn0033428	FBtr0088524	2	1	2	202	2R	5473108	5473126	TACCTGAAGAGAATACGCG		58	5473351	5473369	CCTTGCAACGTAATGTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1809	FBgn0033423	FBtr0088520	3	1	1	63	2R	5450903	5450990	GTTATCCTTATCGTGACCAG		57	5451016	5451034	TAGGGCAGATTATCATCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Rme-8	FBgn0015477	FBtr0088618	1	1	1	80	2R	5057398	5057416	GTGGAAATTCAATGCATCG		57	5057280	5057354	GACAGTAGAGTTATCCGGG		58	NA	
Drosophila melanogaster	50	CG30355	FBgn0050355	FBtr0088726	3	1	1	62	2R	4567155	4567174	CGCACATATTCCTCTAAGCA		59	4567112	4567130	CTCAAGGGTAACTCCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18853	FBgn0042173	FBtr0089426	2	1	1	299	2R	3717029	3717108	CAAGGTCAGAGCAATTATACC		58	3717368	3717387	ATAGTGCTCGTTGTAGAAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1550	FBgn0033225	FBtr0088899	2	1	1	60	2R	3698941	3698959	CCAACTTTCGACTTGTTCC		58	3698899	3698917	AAGAGCACACTGTATGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp42En	FBgn0033135	FBtr0089034	2	1	1	137	2R	2940733	2940816	GTTTGGAGCTATGTGATCTG		58	2940915	2940934	CACATTGGTCCTTTGATCAG		58	NA	
Drosophila melanogaster	50	CG33558	FBgn0053558	FBtr0113470	1	1	2	85	2R	2814317	2816022	ACTTTGACGACTATGCCAC		59	2814250	2814269	GAGATTCTCGAGGAATTCGG		59	NA	
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086205,FBtr0086204,FBtr0086197,FBtr0086201,FBtr0086196,FBtr0086198,FBtr0086202,FBtr0086199,FBtr0086200,FBtr0086203	1	10	11	67	2R	2764942	2764960	AAGTGGAATTGTCTGAGGT		58	2764829	2764847	AAATTCAGCCTGATCGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9410	FBgn0033086	FBtr0086116	1	1	3	60	2R	2556768	2556786	CTCCAAACCGTAACATTGC		59	2556809	2556828	CAGGATAAGAGCAATCTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pld	FBgn0033075	FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997	2	6	6	80	2R	2141752	2142360	ACATTCAGGGTTACTTGGT		58	2142404	2142422	CCTCCTTACTAGTTCCAGG		58	NA	
Drosophila melanogaster	50	CG1294	FBgn0033030	FBtr0086035	2	1	1	62	2R	1553223	1553244	GGTCACTCAATTTATCACTTCC		59	1553267	1553285	CTTCTTGCAATCGACTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30438	FBgn0050438	FBtr0086068,FBtr0086067,FBtr0086069,FBtr0086070	2	4	4	83	2R	1436271	1436341	GAAATATGACATGGTGGCA		57	1436388	1436406	TCAGTGCTAAGATCAGGAC		58	NA	
Drosophila melanogaster	50	CG40133	FBgn0058133	FBtr0111297	1	1	1	68	2R	38746	38764	AAATCTGCTAGCAACAAGG		58	46877	46895	ATCAGTATGCTTGAGTCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His-Psi:CR33802	FBgn0053802	FBtr0091806	1	1	1	60	2L	21418956	21418975	GAATTATTCCGCGTCATCTG		59	21418998	21419016	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR33987	FBgn0053987	FBtr0100032	2	1	1	64	2L	22019477	22019495	CGGAATTAACAGACCTCGA		59	22019522	22019541	GCTTTCCACGATAATTTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17715	FBgn0041004	FBtr0111244,FBtr0111245	2	2	6	61	2L	22737569	22741711	ATTATACGAGAGTCAACTGGC		59	22741732	22741752	TATTAGAAAGTCGTCCGAAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Tif-IA	FBgn0032988	FBtr0111122	3	1	2	171	2L	22250280	22250298	AGTTCACATACTTCCTCCG		58	22250551	22250569	TTTAGAGACTCCAATCGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15219	FBgn0040519	FBtr0085944	1	1	2	138	2L	22105224	22105242	AGAGTAATTGCGGACAAGG		59	22105056	22105122	TCCATTGGAGAGTAAAGCC		58	NA	
Drosophila melanogaster	50	His2B:CG33906	FBgn0053906	FBtr0091910	1	1	1	61	2L	21433601	21433619	AAGAACATCACCAAGACCG		59	21433558	21433576	TAGATGGCATAGCTCTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His4:CG33907	FBgn0053907	FBtr0091911	1	1	1	110	2L	21430016	21430037	GGGATTAAAGGATAGAACAGTG		58	21429927	21429945	CTTGGATGTTATCACGCAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG31988	FBgn0051988	FBtr0081490	3	1	1	132	2L	21201885	21201903	ATTACGAGGACCTCTTTGC		59	21201771	21201790	GAGGTTATAGGATTCTCGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mcm10	FBgn0032929	FBtr0081475	1	1	1	60	2L	21180260	21180280	CTGCTATCATTAAGGAACCAG		58	21180302	21180320	AGGAAGTTCTTTACCTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mpp6	FBgn0032921	FBtr0081469	2	1	1	70	2L	21157284	21157302	ACCAAGACATGGTAAAGGC		59	21157336	21157354	AAACTTCTTGCTCATGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9331	FBgn0032889	FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081419	2	4	5	135	2L	20825961	20825980	TAAAGAGACGTAAGATCCCG		58	20826078	20826641	CACTTGTCATTGTCGATGG		58	NA	
Drosophila melanogaster	50	pr	FBgn0003141	FBtr0089396,FBtr0089395	1	2	2	84	2L	20074323	20074778	CTATACAGTTGAGATAACCGTC		57	20074260	20074278	TATAGCCTCTTTCAGCTCG		58	NA	
Drosophila melanogaster	50	bsh	FBgn0000529	FBtr0089320,FBtr0089319	3	2	2	74	2L	19767866	19767884	CTGAATGGAGGTAGTGGTG		59	19767810	19767828	TTGAAGAAATCCGTGATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13079	FBgn0032808	FBtr0081255	3	1	1	124	2L	19560187	19560205	GACGCAAGAATGACAAAGG		59	19560293	19560895	TACGTATTTGTTACGGGCA		58	NA	
Drosophila melanogaster	50	CG13085	FBgn0032780	FBtr0081203	3	1	1	61	2L	19429851	19429869	GGCAGATAAGCTAAAGGCA		59	19429894	19429912	GATAGGAATCACCCGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lectin-37Db	FBgn0053533	FBtr0091499	2	1	1	74	2L	19419475	19419493	TATCCATCAATGACCTCGG		58	19419531	19419549	AGTTAAGAAACGGAGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)37Cc	FBgn0002031	FBtr0081164	1	1	2	179	2L	19123220	19123238	GATCTACACCATTCTCGGC		59	19122756	19122774	AGAATAAAGCCGAACTGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17344	FBgn0032755	FBtr0081152	3	1	1	60	2L	19102534	19102552	TCTACCATCGGAATCTCCA		59	19102576	19102594	GGTGTAACCTGAGATTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Side	FBgn0032741	FBtr0081141	2	1	1	213	2L	19028914	19028932	AAACCACTCATGGAGAAGC		59	19029108	19029315	TGTATTTGTTAACCGTGGGA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG10283	FBgn0032681	FBtr0081085,FBtr0081086	1	2	2	94	2L	18483894	18483914	GATCAGGACATGTTAATGAGG		58	18476903	18476986	GAAGTCATTAATCTCTTGGGAC		58	NA	
Drosophila melanogaster	50	RpS26	FBgn0004413	FBtr0081091	3	1	3	180	2L	18443102	18443120	AGTGCTAAATGCTAATGGC		58	18442940	18442960	GATGACGAACTTCTTGATTGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG5758	FBgn0032666	FBtr0081036,FBtr0081035,FBtr0081037	2	3	3	80	2L	18127999	18128020	GCAATCAGGTGTTCATTATCTC		59	18128061	18128143	TATCCTTGTGCATCTGGTG		59	NA	
Drosophila melanogaster	50	Dif	FBgn0011274	FBtr0081008,FBtr0081009	3	2	2	80	2L	17417621	17417640	CTGAAACTAGTGAGACCCTC		59	17415378	17417579	GGTTAGGAGTTCTGGATTCG		59	NA	
Drosophila melanogaster	50	CG15140	FBgn0032631	FBtr0112773	1	1	1	60	2L	17287383	17287404	ATAATGGGAATGGTAGTAACCG		59	17287425	17287443	GTTGTTGTAGGTGTAGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ugt36Bb	FBgn0040261	FBtr0080910	2	1	1	60	2L	16796937	16796957	CAACTGGAAGGACAATATGAG		58	16796976	16796997	GATTCTCGTAGATCTCTTTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fzy	FBgn0001086	FBtr0080833	2	1	1	92	2L	16311771	16311789	ATATACCCACCACATCCGA		59	16311898	16311916	CTATATTGTCGGCACTCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	twe	FBgn0002673	FBtr0080855	1	1	1	60	2L	16260759	16260779	CTAAAGACCATCTCCAGTGAC		59	16260719	16260737	ATTGTTCATCAAACTCGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(H)	FBgn0004837	FBtr0080700	2	1	1	64	2L	15041941	15041959	GAGTACCAGTTCTACGAGG		58	15042045	15042063	TTAACGATTGGCACTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32971	FBgn0052971	FBtr0114463	2	1	3	126	2L	14277365	14277383	GAGTCGAGGACTTCAAGAG		59	14277533	14277552	ACATGCTTAGGACGTTATCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG16890	FBgn0028932	FBtr0080575	1	1	2	60	2L	13782669	13782687	CAACAACCCGATATAAGCC		58	13782627	13782646	CTAGATATCGCTCGAATTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31849	FBgn0051849	FBtr0080490	3	1	1	66	2L	13181646	13181664	CTATACGCTACTACGCTGC		59	13181598	13181616	CCTAAAGTGACTGTAGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12404	FBgn0032465	FBtr0080430	3	1	1	177	2L	12994233	12997475	TTAATCACCATTCAGGGCA		58	12994074	12994095	CCTAGTAAATGGTAATCAACGC		59	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090013,FBtr0090027	1	3	17	90	2L	12731059	12737970	TCTTTATGGTTCTGGCTACC		59	12738023	12738041	AAGTAGTACAGGAAGGCGA		59	NA	
Drosophila melanogaster	50	crol	FBgn0020309	FBtr0080260,FBtr0080263,FBtr0080261	3	3	4	152	2L	11797737	11797843	TGAAACCGATCATAATTCCC		57	11797604	11797622	CCGCATTATGTGAGATGAG		58	NA	
Drosophila melanogaster	50	CG6750	FBgn0032292	FBtr0080122	3	1	1	85	2L	10732075	10732093	AGAACGGCAAGTATCTCAG		59	10732008	10732026	CTGAGTCTTGAAGTAGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6232	FBgn0032252	FBtr0080029	3	1	1	82	2L	10446023	10446196	GCATCAATCGTAACCTATTGAC		59	10446239	10446257	ATTGCACAGTTGATAGCGT		59	NA	
Drosophila melanogaster	50	Ip259	FBgn0025366	FBtr0080017	3	1	1	60	2L	10409026	10409044	ATTATCTGCTCGACAGAGG		58	10409067	10409086	TGCTTGATCATATTGGACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ip259	FBgn0025366	FBtr0080017	1	1	1	60	2L	10409025	10409044	CATTATCTGCTCGACAGAGG		59	10409066	10409085	GCTTGATCATATTGGACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GATAd	FBgn0032223	FBtr0079993	1	1	1	163	2L	10334803	10335789	CTCTATTAAGGCACTGCCC		59	10335916	10336031	CATTTGGGTCTGGTCTCAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG4957	FBgn0032205	FBtr0079985	1	1	1	80	2L	10269484	10269504	CAATGATGCTATAGAGTTGGG		58	10269545	10269626	GGACTGCATAGGAAATTGAC		58	NA	
Drosophila melanogaster	50	CG5734	FBgn0032191	FBtr0079960	3	1	1	61	2L	10206166	10206185	TAGAGATGCCAAGCTAACTG		59	10206124	10206142	CAACGGTCTGGTTGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15828	FBgn0032136	FBtr0079843	2	1	2	156	2L	9643296	9643402	ATAAAGTGATGCAGACCCTG		59	9643519	9643539	ATAATCTGCTGAACTCGAAGG		59	NA	
Drosophila melanogaster	50	Ggamma30A	FBgn0028433	FBtr0079796,FBtr0079797,FBtr0079795	1	3	3	82	2L	9272595	9291061	AATCCATAGCAGAAATGCG		58	9291107	9291125	ATTGTTCTTCTTATCCGGC		57	NA	Nonspecific
Drosophila melanogaster	50	CG13089	FBgn0032052	FBtr0079682	3	1	1	90	2L	8516291	8516369	ATGTTGGAAATTCATGGCC		58	8516423	8516441	GATCCACAAATGCCAAAGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG7627	FBgn0032026	FBtr0079608	3	1	1	143	2L	8359565	8359650	CTAATGTACCGTGAGATTGGA		59	8359442	8359460	CATCCGTACCCTTTCATCC		59	NA	
Drosophila melanogaster	50	CG7830	FBgn0032015	FBtr0079613	3	1	1	139	2L	8307252	8307273	GGTCAAATGTGGAATCATATCC		59	8307056	8307152	ACAATCATGGCATTCAGGA		59	NA	
Drosophila melanogaster	50	Pvr	FBgn0032006	FBtr0079628,FBtr0079626	3	2	6	124	2L	8226598	8227662	TCACATTGATAAAGACGGCA		59	8226493	8226512	ATACTGATTCAACGTAGGCG		59	NA	
Drosophila melanogaster	50	CG31607	FBgn0051607	FBtr0079579	2	1	1	129	2L	8154040	8154166	GAAGAGGATCAGGTTATTCCT		58	8154257	8154275	CACAATGTGGATGATCTCG		58	NA	
Drosophila melanogaster	50	CG7227	FBgn0031970	FBtr0079551	1	1	1	92	2L	7995680	7995763	GGCAAATGGTACTGATAACC		58	7995607	7995626	CAACAGGAGGATATGTTGAG		57	NA	
Drosophila melanogaster	50	Snoo	FBgn0085450	FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718,FBtr0112720	3	5	5	60	2L	7975303	7975321	GCACGACTATCTTCATGTG		58	7975261	7975281	GAGGATGATCTGGTATTTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	milt	FBgn0022201	FBtr0079397,FBtr0079399,FBtr0079398	2	3	3	180	2L	7051637	7051769	CAGATACTGACACTCCCAC		59	7051911	7051931	TTTAGCTGAGCACTGATATCG		59	NA	
Drosophila melanogaster	50	Pcp	FBgn0003046	FBtr0079388	3	1	1	61	2L	7022218	7022237	ATTCAGGATCATACGATCCC		58	7022261	7022279	GTGAGGTAAATGGTCTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	homer	FBgn0025777	FBtr0079307,FBtr0079306,FBtr0110778	3	3	3	137	2L	6722249	6722267	ATAAACTCGACGATCACAC		57	6722075	6722148	CTTCTCTACGAACTTGGTC		57	NA	
Drosophila melanogaster	50	CG16947	FBgn0031816	FBtr0079271	2	1	1	81	2L	6460474	6460568	TGAGATTTGGTAAGTACACCTG		59	6460414	6460432	CCACATCCATGACAATGGT		59	NA	
Drosophila melanogaster	50	stai	FBgn0051641	FBtr0079196,FBtr0079197	3	2	3	184	2L	6122162	6122181	TCATCAGTGACATGAAGGAG		59	6122398	6122706	GATTGTGTTATGCTCCTTTAGG		59	NA	
Drosophila melanogaster	50	qtc	FBgn0028572	FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260	1	5	7	98	2L	5069212	5070107	CGCGTAAGACCATTTATCG		58	5070169	5070187	AGAAGATAGCGCTCTTGAG		58	NA	
Drosophila melanogaster	50	CG14042	FBgn0031671	FBtr0110983,FBtr0110984	2	2	2	66	2L	5038667	5038685	TATTGAGGACGTTCCACTG		58	5038715	5038733	CTGTTGGATATCCTCCTGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33003	FBgn0053003	FBtr0077434	3	1	1	93	2L	4401671	4401689	GAAGACACGTATTTACCCG		57	4401918	4401936	GTGATCATGATTGTGTCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Atet	FBgn0020762	FBtr0077427,FBtr0112899,FBtr0112898,FBtr0077426	2	4	4	80	2L	4343789	4343809	CATCTCAACTACTGGTACTCC		59	4343849	4343931	GGAGAAGACAATCTGAAATGG		58	NA	
Drosophila melanogaster	50	CG31961	FBgn0051961	FBtr0077484,FBtr0077485	2	2	2	60	2L	4187329	4187351	GACTACTTCTACCAGACTTTCAG		59	4187291	4187309	CATCCTTTAATCGCTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3964	FBgn0031574	FBtr0077501,FBtr0077502	3	2	2	112	2L	3865421	3865504	GCATCATCAAGAACACCAC		59	3865580	3865598	GAACGATCCGGGTATATGG		59	NA	
Drosophila melanogaster	50	CG17221	FBgn0031500	FBtr0077654	1	1	2	96	2L	3040732	3040801	TCATACTGTCTTGCTCCTG		58	3040861	3040879	TTATGTACAGTCCCGACCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG17264	FBgn0031490	FBtr0077647	2	1	1	80	2L	3019862	3019880	TATCTTCAGCATAGGTGGT		57	3019924	3019999	ACATCGTAGTACAAGTGCT		58	NA	
Drosophila melanogaster	50	CG17301	FBgn0031442	FBtr0077697	1	1	1	60	2L	2653363	2653381	TTCTCGGATTTCATCCTCC		58	2653405	2653423	TTAAGTCGTATCCGTTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9870	FBgn0031422	FBtr0077768	3	1	1	60	2L	2383463	2383481	CACGAGGAGATTTCTCCTG		59	2383503	2383523	TGTAATCAATATCACGGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9967	FBgn0031413	FBtr0077799,FBtr0100648	1	2	2	122	2L	2309692	2310133	TTCCTCAACGATTACAGCA		58	2309588	2309606	CTCCGGAGGATTATCATCC		58	NA	
Drosophila melanogaster	50	Got2	FBgn0001125	FBtr0077868,FBtr0100359,FBtr0077867	3	3	3	60	2L	1984780	1984799	CTATCTCACCAACGATGGAC		59	1984739	1984757	GTACTCGACATTCTTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31665	FBgn0051665	FBtr0089787,FBtr0089786	1	2	2	123	2L	1851262	1851698	ACCTGCTAATTGTGGTGTC		59	1851785	1851803	GAGTTGGAGTAGCACACTC		59	NA	Nonspecific
Drosophila melanogaster	50	c-cup	FBgn0031367	FBtr0077894	3	1	1	60	2L	1831877	1831897	CGTAGGATATTTAGTCGATGC		58	1831837	1831857	TGTATGTTTGACTGGACTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	c-cup	FBgn0031367	FBtr0077894	1	1	1	60	2L	1831846	1831864	TATTAGCGGTAGTCCAGTC		57	1831804	1831822	ACTCTTCTCCATTTGCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14342	FBgn0031324	FBtr0114498	1	1	1	137	2L	1204674	1204767	ATGAGGGTACACAGAACCT		59	1204927	1204945	CTTGAGAATCTCCTGCAGG		59	NA	
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	3	7	8	167	2L	119224	119296	ATAATGCAGACTGATGTCCTG		59	119020	119038	TTGAGCCATGGTGTTTAGG		59	NA	
Drosophila melanogaster	50	su(f)	FBgn0003559	FBtr0113732,FBtr0113736,FBtr0113733,FBtr0113734	2	4	5	60	XHet	78177	78197	CACACTATGTACAACAAGCTG		59	78218	78302	GAACATAGACCAATGTGGGA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG41475	FBgn0084035	FBtr0111202	1	1	1	82	X	22261274	22261292	AGCCGAAAGACAGAAACTC		59	22261336	22264652	CACAAATACAGAGTTTCGTCG		59	NA	
Drosophila melanogaster	50	CG14617	FBgn0031191	FBtr0100650,FBtr0077353,FBtr0100652,FBtr0100651,FBtr0077352	1	5	5	261	X	21884792	21884810	CTCTAGTTCCATGGACCCT		59	21885099	21885117	AAAGACCAGAGTCTGAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32523	FBgn0052523	FBtr0077183	2	1	1	69	X	21089121	21089139	GAGTCATAATCTCGGCCAC		59	21089172	21089257	GGAACTACATCATTCCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32529	FBgn0052529	FBtr0100839,FBtr0074800,FBtr0074801	2	3	3	81	X	19795510	19795910	GACCGTATATGGAATATCCACC		59	19795952	19795970	ATATGAGGCCCAGTATGGA		59	NA	
Drosophila melanogaster	50	l(1)G0084	FBgn0026680	FBtr0074762	1	1	1	94	X	19526930	19527012	AATTCCGGAGACGAAACTG		59	19526854	19526872	GAAGAAGATCCTCTACCGC		59	NA	
Drosophila melanogaster	50	CG6290	FBgn0030921	FBtr0074563	3	1	1	110	X	18331607	18331625	CACAGAATCCGCTAGAGTC		59	18331699	18331717	GATTGTCAATGTCGACGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32560	FBgn0052560	FBtr0113438,FBtr0074457	1	2	2	133	X	17640916	17641005	GTCATGTCCACCATAGATCTC		59	17641100	17641118	GATCCGCATGAGTAGTACC		59	NA	
Drosophila melanogaster	50	CG8211	FBgn0030858	FBtr0074480	2	1	1	187	X	17547784	17547868	ATGGAGGTGCTAAGTTGTC		59	17547615	17547633	CTTAGGTCCTCCCAAATCG		59	NA	
Drosophila melanogaster	50	nonA	FBgn0004227	FBtr0074232	1	1	3	75	X	16259644	16259662	TGATTGGAAACAATGCTGC		59	16260959	16260980	CCTTGGTTCATATTGTTAACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9065	FBgn0030610	FBtr0073966	2	1	1	70	X	14978593	14978674	AAATATCCGTCTCGAACCG		59	14978541	14978559	AACTCCTTGAGATGCACTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11068	FBgn0030536	FBtr0073854	2	1	1	84	X	13849692	13849779	GTGAGCTATACGATTCGCA		59	13849827	13849845	CTCTCCTTCTGGAATGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Yippee	FBgn0026749	FBtr0073789,FBtr0100168	2	2	2	60	X	13280865	13280883	GTCAATTGATCAGTACCCG		57	13280757	13280775	ACACGCTTAAACAGATAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Tim9a	FBgn0030480	FBtr0073775	3	1	1	124	X	13279589	13279607	CATACGCGACTTTACAACG		59	13279760	13279778	CAATAACCTGGAACTCCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG12096	FBgn0030457	FBtr0073727	2	1	1	60	X	13054606	13054624	GTAATGGAGCTCCTAGTGC		59	13054648	13054666	GACGTTCCATGTAGGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12717	FBgn0030420	FBtr0073704	1	1	1	60	X	12657050	12657069	CCATCAGTGATAACATTGCC		58	12657009	12657028	TGCACCTTCCTATAGAACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17788	FBgn0030392	FBtr0073648	2	1	1	227	X	12358358	12358376	ATAATGGTTCGCTTGTGGT		59	12358567	12358585	ATTTATCGCTCAGATCGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34408	FBgn0085437	FBtr0114584,FBtr0114585,FBtr0071439,FBtr0112675	3	4	4	87	X	10121982	10122065	CAGTGACTCTGCTCATACG		59	10122115	10122134	TTAATCCCAGACTTACTGCG		59	NA	
Drosophila melanogaster	50	CG32706	FBgn0052706	FBtr0071287	3	1	1	290	X	8981291	8981309	GACTAAGCTAGGCGAAGTG		59	8981563	8981654	GTCTTGAAACTTGACAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	oc	FBgn0004102	FBtr0089650,FBtr0100341	1	2	2	81	X	8527989	8534404	TCTAGAGTACAGGTGTGGT		58	8527926	8527944	TCAAGCTATTCGACTGCTG		59	NA	
Drosophila melanogaster	50	CG15345	FBgn0040928	FBtr0071176	2	1	1	60	X	8291784	8291802	GGAACAGAAAGAGATGCAG		58	8291742	8291763	CAGTCTCATGGTTTGAATTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6978	FBgn0029727	FBtr0070715	2	1	1	60	X	4678541	4678560	GCTTCTTCTATGGCTATGTG		58	4678581	4678601	CCGTAGTATTTGATCATCAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13021	FBgn0029669	FBtr0070570	2	1	3	88	X	3408477	3409288	TACTGTGGAAACTTGGTGTC		59	3409339	3409357	GCAACTTTAGGCAGAAGTG		59	NA	InUTR
Drosophila melanogaster	50	CG14624	FBgn0040357	FBtr0070204	3	1	1	74	X	1100983	1101002	CTTCACTACCTTCTCTGACG		59	1101039	1101057	GAACTGGAGGAAAGGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13373	FBgn0029522	FBtr0112947,FBtr0070076	3	2	2	194	X	371748	371766	AGCAGTACTATCTGCTTGG		58	371924	371942	AAATGAACCTGGAGCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bt	FBgn0005666	FBtr0089792,FBtr0089791,FBtr0089794,FBtr0089793	1	4	4	80	4	763161	763417	TACTCTGTTGTGGAAGACTC		58	763458	763478	CTTGTAGAACTTGAACGTAGG		58	NA	
Drosophila melanogaster	50	dpr7	FBgn0053481	FBtr0089142	2	1	3	141	4	272055	272073	GTAATACATCCACCAGGCA		59	270861	271951	CGTTGTCAGCTATTACTTGC		59	NA	
Drosophila melanogaster	50	Sry-beta	FBgn0003511	FBtr0085556	3	1	1	80	3R	25865600	25865671	GATAGAAGGCTGCATTGTG		58	25865714	25865733	CGCTGGTTTATGATCTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18110	FBgn0039677	FBtr0085449	3	1	1	82	3R	25496357	25496375	GATGTGTACTTCCAGGAGG		59	25496418	25496497	CCATAGGAAACCATTAAGTCGA		59	NA	
Drosophila melanogaster	50	CG11876	FBgn0039635	FBtr0085369,FBtr0085366	3	2	4	90	3R	24941220	24941299	CAAGAAGGGTATTGAGGCT		58	24941353	24941371	GTGGGTCTTTCGTACAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Mlc1	FBgn0002772	FBtr0085196	3	1	2	85	3R	23484199	23484220	AGGATGATGAAGGATTTATCCC		59	23483669	23483799	CGAGGAATGTGTTTAGTCGA		59	NA	InUTR
Drosophila melanogaster	50	CG11909	FBgn0039330	FBtr0084847	3	1	1	70	3R	21170885	21170903	GTGAACCTGTGAATGTTCC		58	21170776	21170852	CTCATCATAGATAGACTGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10845	FBgn0039246	FBtr0084713	2	1	1	60	3R	20728136	20728154	AAGTTCCAGGAAATGTGGG		59	20728175	20728196	GCTGTCTTTGCTCATTATACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31128	FBgn0051128	FBtr0084638	2	1	1	91	3R	20295414	20295486	CAAGTACAACGTTACGGGT		59	20295541	20295559	TTTGGTAGTAGATTCCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Golgin84	FBgn0039188	FBtr0084629	2	1	1	60	3R	20182201	20182274	GCACAGATGATGTCAAAGC		59	20182159	20182179	CGATTATCGAATGGACTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gdh	FBgn0001098	FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498	2	4	4	97	3R	19763339	19763461	AAGCTAAGATCATTGCCGA		59	19763260	19763278	GTACAGATCGGGAATGACC		59	NA	
Drosophila melanogaster	50	nau	FBgn0002922	FBtr0084472	1	1	1	86	3R	19542152	19542234	GATCTGCTACAGGAATCCAG		59	19542085	19542103	CAGATAATCGGACTGGCAG		59	NA	
Drosophila melanogaster	50	CG13827	FBgn0039068	FBtr0084376	3	1	1	225	3R	19085753	19085831	AACCTCATGAGGACAATGC		59	19086079	19086097	ATAAGGTGCCAATAGCACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31139	FBgn0051139	FBtr0084321	3	1	1	98	3R	18574670	18574688	TAGTTGGAGCCCTAATCCT		59	18574535	18574609	AGTCGTAGCTGGTATTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31465	FBgn0051465	FBtr0084147	1	1	1	280	3R	17708594	17708670	CATACCATCAGCAAGTCAG		57	17708971	17708989	CTTGAGATTCCCAGGATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5849	FBgn0038897	FBtr0084125	3	1	1	80	3R	17568381	17568477	GAGAAATATCGTTATAGCGTGG		58	17568518	17568536	AAAGTACTCGTCATCCTGG		58	NA	
Drosophila melanogaster	50	CG10830	FBgn0038839	FBtr0083986	3	1	1	287	3R	16722461	16722479	TTAAGTTCCGGAAGCTGTC		59	16722192	16722210	ACTCATTGTAGTGGTTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arc42	FBgn0038742	FBtr0083817	1	1	1	172	3R	15703862	15703880	ATCCAGAGAAACAGATCCG		58	15704084	15704102	ATACAGGGAGTTGTTCACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5217	FBgn0038694	FBtr0083741	2	1	1	60	3R	15073533	15073554	ACTATAAGTCGCTTCTTTACCC		59	15073383	15073513	TCGAAGGATCTTGAACATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gatA	FBgn0086360	FBtr0083718	3	1	1	299	3R	14852918	14853847	CTTTGTTATGCAGCAATTGG		58	14852638	14852656	TATTCCTATGCGCACAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14299	FBgn0038651	FBtr0083681,FBtr0100423	1	2	2	80	3R	14583736	14583754	GTTACACGCACTTTCAGTG		59	14583620	14583692	ATCCACCTGTATCACATCG		58	NA	
Drosophila melanogaster	50	CG4053	FBgn0038482	FBtr0083416	2	1	1	60	3R	12957564	12957582	ACAGACCTTATTTCCGGAC		58	12957522	12957541	GTAGACATAGGGTATGTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31265	FBgn0051265	FBtr0083402	3	1	1	61	3R	12954019	12954037	AATCCCTGTGAATCAAAGC		57	12954062	12954080	TTTATCCTGCCAGATTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10317	FBgn0038423	FBtr0083319	2	1	1	151	3R	12195651	12195727	AAATGAGAGTATCCTCCGA		57	12195339	12195357	CCACTATGTCTATCTCGCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6136	FBgn0038332	FBtr0083108	3	1	1	93	3R	11197501	11197519	CCAACCACGATATCAAGCT		59	11197426	11197444	GAACACAGTTCAATGCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3631	FBgn0038268	FBtr0082997,FBtr0114533	3	2	2	188	3R	10707240	10707321	CGATATGACCTATTGCAAATCG		59	10707470	10707488	TCCAAGTGATCCTTGTTCG		59	NA	
Drosophila melanogaster	50	put	FBgn0003169	FBtr0082977	1	1	1	81	3R	10447046	10447064	GAAGTTCAGGAGAGTGTGG		59	10446923	10447002	ATACATTAAGTCCCGGATGG		58	NA	
Drosophila melanogaster	50	DDB1	FBgn0027049	FBtr0082709	3	1	1	83	3R	8881937	8881958	TCGATGGAGATCTAATTGAGAG		58	8882002	8882082	TCAGTGTCAACTCCAATCC		59	NA	
Drosophila melanogaster	50	CG6225	FBgn0038072	FBtr0082649,FBtr0113225	2	2	2	81	3R	8484654	8484732	ACTCCTGTGATTAAGTCATACG		59	8484773	8484792	TGCCCAGACTAATCTTTGAG		59	NA	
Drosophila melanogaster	50	CG14712	FBgn0037924	FBtr0082418	3	1	1	119	3R	7455335	7455353	GAGAATCGACCCATATTGC		58	7455436	7455517	CTGTTGCGTATCTTCAGTG		58	NA	
Drosophila melanogaster	50	CG4706	FBgn0037862	FBtr0082336	1	1	1	60	3R	6965226	6965244	GAACCACACCCTTAATGAG		57	6965268	6965286	TAGATTCAAGGCACTTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Art1	FBgn0037834	FBtr0082304	1	1	1	80	3R	6613242	6613261	ATTGAGGAGATTGAGCTTCC		59	6613094	6613199	GTAGAACAGGCAGTAACCC		59	NA	
Drosophila melanogaster	50	CG31373	FBgn0051373	FBtr0082318	3	1	1	110	3R	6534604	6534779	CCGTCTTCATTAATCCGGA		59	6534512	6534530	CCTTATCGTACCGTTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nerfin-2	FBgn0041105	FBtr0082177	2	1	1	124	3R	5898513	5898531	GAAACGAGTTGTGGAAACG		59	5898618	5898768	TCTTTAGGTAAGCTTGACGT		58	NA	
Drosophila melanogaster	50	CG16905	FBgn0037762	FBtr0082144	2	1	1	176	3R	5639946	5639965	AATCCATGGATAACCATGGG		59	5640104	5640187	AAACAGGAAGTGAACTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pnn	FBgn0037737	FBtr0082126,FBtr0113210	2	2	2	60	3R	5567628	5567646	ACGATACTGCAATAGACGA		58	5567670	5567688	TTATCCAACTGCTCTTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1979	FBgn0026563	FBtr0081628	3	1	1	107	3R	2883432	2883450	ATGAAACGGTTGAAGAAGC		58	2883520	2884145	TATAGAGAACGAGAGCTGAC		58	NA	
Drosophila melanogaster	50	CG18048	FBgn0037435	FBtr0081712	1	1	1	60	3R	2172356	2172374	GACAAGCACATCAATTCCA		58	2172398	2172416	CCTCCTTTAGGGATTCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14669	FBgn0037326	FBtr0078679	2	1	1	172	3R	1280551	1280571	TCAGATCTTGGACAGTTTCAG		59	1281084	1281183	TGTAGTTATATTGCGCCGA		58	NA	InUTR
Drosophila melanogaster	50	UbcD6	FBgn0004436	FBtr0078849	1	1	1	85	3R	776242	776263	GGAATATGCTTGGACATATTGC		59	776116	776196	CTCAGCAGTGACTGTATGG		59	NA	
Drosophila melanogaster	50	Karybeta3	FBgn0011341	FBtr0078860	3	1	1	141	3R	476444	476527	TTTCTACAAAGGGCTTCCAG		59	476631	476649	CTCGTCGATCAGATTCCTG		59	NA	
Drosophila melanogaster	50	CG41465	FBgn0084026	FBtr0111215	3	1	1	61	3R	287887	287907	CCTATCGGTATATTGGGAGTC		58	287930	287948	TTGTATGCTGTTTGAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14568	FBgn0037124	FBtr0078455	3	1	1	65	3L	21726281	21726299	CTGATCTTACCTACGGACC		58	21726234	21726252	CGTAAGTGTTATCGGGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14574	FBgn0037104	FBtr0078467	2	1	1	98	3L	21574302	21574321	TCGTGTACCGAGAATTATGG		59	21574223	21574241	AGGAGTAACAGAAGATGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11309	FBgn0037070	FBtr0078407	2	1	2	84	3L	21296636	21296913	AAATACTTCGCCGAGATCAG		59	21296571	21296589	AAATTGGTTGGACGTTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	fbl	FBgn0011205	FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188,FBtr0078190	1	5	5	105	3L	20383913	20383991	GAAGATCGATAGGGTCGTC		59	20384060	20384078	CTTCATTGTGCCATTGGAC		59	NA	Nonspecific
Drosophila melanogaster	50	schuy	FBgn0036925	FBtr0074899	3	1	1	201	3L	19979619	19979637	CGAATAGACCTTCGTTCGT		59	19979802	19979883	CCTTTCTGGTTGCTATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9231	FBgn0036887	FBtr0074972	3	1	1	103	3L	19578769	19578852	TTAGTCAGGATGTCATGGAG		58	19578685	19578703	ACTGTACACCATAATGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14585	FBgn0036757	FBtr0075166	1	1	1	80	3L	17809300	17809432	CTACCTAAATACCCAGAATCCT		58	17809241	17809259	ACATAGCCAGGATTATCCC		58	NA	
Drosophila melanogaster	50	CG32182	FBgn0052182	FBtr0075188	2	1	1	60	3L	17751508	17751526	GAGCTGGCTCAAATATTGG		58	17751550	17751568	CTGGCAGGTTAATTAACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7460	FBgn0036749	FBtr0075187	3	1	1	60	3L	17734567	17734585	AAACTACTCATGAAAGCGC		58	17734608	17734627	CATGATCCTTGAGGATACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13025	FBgn0036660	FBtr0075346	2	1	1	65	3L	16771352	16771372	GTTTATATCTACGACTTGCGG		58	16771246	16771325	TAAGTTCACTTCGGCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34248	FBgn0085277	FBtr0112442	1	1	1	117	3L	16263663	16263681	ATCCTTTGTTCTACCCAGC		59	16263564	16263582	TCCTTTGACCACCTTATGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG34246	FBgn0085275	FBtr0112440	3	1	1	163	3L	16226578	16226596	TAAACTGCTCAGCTTTCCC		59	16226781	16226801	TATATGCCTTGTTGATGAGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11279	FBgn0036342	FBtr0075887	3	1	1	82	3L	13040388	13040406	TCCGTTATTTCGAAGTCGG		59	13040452	13040470	TTGCTCAACTGGATGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11253	FBgn0036338	FBtr0075894	3	1	1	152	3L	13018154	13018172	GGATGATCTCAAGATGGGC		59	13017963	13018038	TCCTTGAGCTGACAATCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32115	FBgn0052115	FBtr0075904	3	1	1	60	3L	12906181	12906199	GAAACGTAACAGCAAACCA		58	12906079	12906158	GTTACGTATTTCACGACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4069	FBgn0036301	FBtr0075965	1	1	1	187	3L	12529999	12530017	AGGAGCTCATCATGTTTGG		59	12529772	12529849	ACCAAACATCCAGAGTTCTC		59	NA	
Drosophila melanogaster	50	CG32094	FBgn0052094	FBtr0076081	3	1	1	83	3L	11806613	11806631	AACACTCCAGGAAGTTACC		58	11806485	11806504	GAACAGACAAGTGTTGTGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6272	FBgn0036126	FBtr0076234	3	1	1	72	3L	11090964	11091109	AAACAATGAGGCTGTTCAG		58	11090910	11090928	ATCGATGCGTTTCTTACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33926	FBgn0053926	FBtr0091930	1	1	1	60	3L	9436464	9438821	GAGGACGAATCCTATGAACTG		59	9438843	9438861	TGTCAGTGATCTCCATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsp67Ba	FBgn0001227	FBtr0076495	1	1	1	60	3L	9372502	9372520	TACTAGATTTGGCCGAGGA		59	9372460	9372480	TCATCTATATCCATTGCCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6745	FBgn0035901	FBtr0076620	1	1	1	87	3L	8504066	8504084	GATTACGTGACCTTCCTGG		59	8504135	8504212	ATGGTCGTAAGTTCAGTCG		59	NA	
Drosophila melanogaster	50	CG7201	FBgn0035865	FBtr0076716	2	1	1	151	3L	8284613	8284631	TCTGGATTACGGATGATGG		58	8284412	8284498	TTTGTCGAAGTCAATGGTG		58	NA	
Drosophila melanogaster	50	mus312	FBgn0002909	FBtr0110926,FBtr0076840,FBtr0076839	2	3	3	82	3L	7323267	7323287	GATGAAGAGAAGTCCACTGAG		59	7323328	7323408	GATTTATAATCTTCCTTGGCGG		59	NA	
Drosophila melanogaster	50	CG9948	FBgn0035721	FBtr0076896	1	1	1	60	3L	6949379	6949397	AATTGATCTGGTGGAACCC		59	6949421	6949439	ATCGTAGTTCGAGAGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SP1173	FBgn0035710	FBtr0076960,FBtr0076959,FBtr0076958	1	3	4	87	3L	6685394	6685479	AATAACCGGTCTTACAGCT		58	6685325	6685343	AGTAATGGTCCGGTATTCC		58	NA	
Drosophila melanogaster	50	CG6619	FBgn0035676	FBtr0077049	1	1	1	138	3L	6072341	6072359	GGATGAGAATGGTAGTGCT		58	6072521	6072539	TCCAATAACTCACGCTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	PGRP-LD	FBgn0035635	FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577	1	4	4	107	3L	5775936	5776021	TGCATAAGCTGGAAAGGTC		59	5776092	5776110	GATACTGGCTCCGATAGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12493	FBgn0035571	FBtr0073363	2	1	1	60	3L	4753579	4753598	ATGAAGGACCTATTGATCGT		58	4753365	4753556	AGTCATCTGACATACCTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13716	FBgn0035563	FBtr0073319	1	1	1	60	3L	4634570	4634589	GAATATACGGCAGTGTAGCT		59	4634529	4634547	CTTGAATAGCGTCTCCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32245	FBgn0052245	FBtr0073313,FBtr0073311,FBtr0073312	2	3	3	101	3L	4586691	4586709	CTACTGGCACAGACTACTC		58	4586774	4588077	GAGTTGAACCTGCATTGTG		59	NA	
Drosophila melanogaster	50	CG33514	FBgn0053514	FBtr0091456	2	1	1	61	3L	4365741	4365760	GGACTATTTCCGAGTTACCA		58	4365784	4365861	CACCCGTTTGATGAATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF5B	FBgn0026259	FBtr0073144	1	1	1	82	3L	3447717	3457228	CATCTAAGATTCCTTACTCTGC		58	3447656	3447674	GTGTTCCAACATTGTGGAG		58	NA	
Drosophila melanogaster	50	CG9977	FBgn0035371	FBtr0073016	2	1	1	141	3L	2770144	2770162	CAAGGAATCCATCCTGGAC		59	2769957	2769975	TGTGATGTACACAATGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1244	FBgn0035357	FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933	1	6	6	88	3L	2640260	2640344	CACAAAGTGAAGATTCACCC		59	2640395	2640413	CCCTGATCCGTAAAGAACC		59	NA	
Drosophila melanogaster	50	CG16985	FBgn0035355	FBtr0072929	3	1	1	141	3L	2599820	2599903	CTTATGTCGAAAGGATCCCA		59	2600007	2600025	GAATGCAGTCCAAATAGGC		58	NA	
Drosophila melanogaster	50	CG13923	FBgn0035277	FBtr0072783	2	1	1	129	3L	1803451	1803469	TCTACAACTTCGAGTTCCG		59	1803562	1805022	CCGACATCGTAGACTTGAC		59	NA	
Drosophila melanogaster	50	Bro	FBgn0013755	FBtr0072760	2	1	1	61	3L	1648373	1648391	GAGTTCGATGAACAACGAG		58	1648416	1648434	TAGCTTTGAATCTGCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Reg-2	FBgn0016715	FBtr0072561	2	1	1	90	3L	606262	606280	AGATGAACCGCGATTATCC		59	605725	606208	AAAGTTCCTGCTATCAGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13877	FBgn0035112	FBtr0072495	1	1	1	78	3L	218188	218293	CATATGCACTCTTGTGGTG		58	218335	218353	CTGAGACTTAGGATGCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slik	FBgn0035001	FBtr0072365,FBtr0072363,FBtr0100470,FBtr0072364,FBtr0072366	1	5	5	80	2R	20287854	20287939	TTAGTCAAAGATCCGCAGG		59	20287792	20287810	CTTGGCATCCAGATTTCTG		58	NA	
Drosophila melanogaster	50	nord	FBgn0050418	FBtr0072263	3	1	1	94	2R	20141443	20141461	CACGACAGTCTTCAATGTG		58	20141519	20141597	CTATGATGCAGTAGCTCAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG2970	FBgn0034936	FBtr0072145	3	1	1	151	2R	19837691	19837771	ATCCGTGATATTCGACTGC		59	19837886	19837904	AGAATCCTAGACTTCCGCT		59	NA	
Drosophila melanogaster	50	ytr	FBgn0021895	FBtr0072234	2	1	1	87	2R	19736114	19736132	AAGACAATGGGATTCTGCA		59	19736045	19736063	GCTTGAGGATTACATGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pal	FBgn0020623	FBtr0089502,FBtr0089501,FBtr0089500	3	3	3	161	2R	19576610	19576628	GGGAATTACTGGATCACGG		59	19576820	19576900	GATGAAGAACTCTCCGGTG		59	NA	
Drosophila melanogaster	50	Rrp4	FBgn0034879	FBtr0072111	1	1	1	183	2R	19443135	19443216	AGAACATCTTTGAGGAGGG		58	19442970	19442988	GGCGATATCCAGATGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bw	FBgn0000241	FBtr0072117	3	1	2	213	2R	19417051	19417128	AAGTTCTTTACAGACCTGGG		59	19416790	19416875	TCTTGAAGTTCTGGACGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	yip3	FBgn0040063	FBtr0072050,FBtr0072051	3	2	2	63	2R	19132122	19132191	ATAGATGACCGCATTTACTG		57	19132078	19132096	CTTCCAGAACTATGTTCCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13532	FBgn0034788	FBtr0071899	1	1	1	107	2R	18760892	18760988	TCTGTCATGTTTGACACCC		59	18761059	18761077	TTGATCTCTAGGAATGCGG		58	NA	
Drosophila melanogaster	50	CG30271	FBgn0050271	FBtr0113366	3	1	2	106	2R	18705171	18705190	ATTCCAGGGACTCTATTACC		57	18706463	18706936	CCGAGAAATCTTCGTTGTC		58	NA	
Drosophila melanogaster	50	wrapper	FBgn0025878	FBtr0071821	3	1	1	102	2R	18269324	18269342	CTCAAGTTCCGACAGATCC		59	18269406	18269490	TATAGATGAGTCCGTTTGTGG		59	NA	
Drosophila melanogaster	50	CG3264	FBgn0034712	FBtr0071781	1	1	1	126	2R	18096996	18097075	CATTGAAGGTGGTCTAATTGAC		59	18096891	18096909	TAAAGTGTCCTCGATGTCC		58	NA	
Drosophila melanogaster	50	MED16	FBgn0034707	FBtr0071770	2	1	1	60	2R	18071077	18071096	CAATTAACCTATGGGTGCTG		58	18071118	18071137	GCTTCTATAATGTCCTCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30393	FBgn0050393	FBtr0071620	3	1	1	60	2R	17154761	17154779	AACGTTACAGGATCAACAC		57	17154719	17154737	ATCTCATAGATCTGCGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4266	FBgn0034598	FBtr0071629,FBtr0113100	1	2	2	80	2R	17054332	17054406	AACGTAATGAAGGGAAATGC		58	17054271	17054289	CTTGTTAAGGTCCATGCTG		58	NA	
Drosophila melanogaster	50	CG10543	FBgn0034570	FBtr0071524,FBtr0071523,FBtr0071525	1	3	3	137	2R	16891581	16891599	CTGCAACTATTGCGATCAG		58	16891757	16891841	CTACCCATATCTTCTTCGCT		58	NA	
Drosophila melanogaster	50	IM4	FBgn0040653	FBtr0071559	3	1	1	127	2R	16756745	16756763	CATGAAGTTCTTCCAAGCC		58	16756577	16756596	AACCAGTACGAATGTACTGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13871	FBgn0034502	FBtr0086282	3	1	1	60	2R	16205834	16205853	TTGGAACTGCTAAGTCACTC		59	16205873	16205894	CTTTCTCTTTAACGTGGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16926	FBgn0040732	FBtr0086499	1	1	1	220	2R	15388351	15388438	AAGTGTTGTTAAGATGGCC		57	15388073	15388092	AATAGCGATTGTACAATCCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Gbp	FBgn0013969	FBtr0086723	2	1	1	152	2R	14335105	14336983	ATGTCAGGGTTTACCTGTG		59	14334971	14334989	CTTATTCGATGGCGTAGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Hsf	FBgn0001222	FBtr0110964,FBtr0086782,FBtr0110966,FBtr0110965	3	4	4	236	2R	14020428	14020510	GTATGGATTCCACAAGATCAC		58	14020212	14020230	GAATCCAGATTGTCCTGAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14488	FBgn0034278	FBtr0089558	2	1	1	60	2R	13654876	13654896	ATCCACTTTACTGCACTACTG		59	13654836	13654854	GTCTTGGTGAAATCTCCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mbl	FBgn0053197	FBtr0086992	1	1	4	80	2R	13239798	13246817	CGACAGATTAGAGACCTCAC		59	13246860	13246878	TTGATGTTGTTCAGCTGGT		59	NA	
Drosophila melanogaster	50	sli	FBgn0003425	FBtr0087303,FBtr0087304,FBtr0112832,FBtr0087302,FBtr0112831	1	5	5	80	2R	11772898	11772918	GCTGGACAATAACCAAATCAC		59	11772064	11772857	TTGTTCAGCGTGAGTATCTC		59	NA	
Drosophila melanogaster	50	l(2)k05713	FBgn0022160	FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309	3	4	4	112	2R	11745506	11745703	TACCTTCAGATGATGTCGG		58	11745412	11745430	CTGATCTGCTTCAGATTGG		57	NA	
Drosophila melanogaster	50	CG8160	FBgn0034011	FBtr0087389	2	1	1	62	2R	11215172	11215190	AATCGGGCCAGTTATATGC		59	11215128	11215147	ATTCTCCCTGTACAAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10200	FBgn0033968	FBtr0087445,FBtr0087444	2	2	2	115	2R	10696983	10697001	ATTCTGGCTCCTCTTACAC		58	10697140	10697160	GTAGGTGGGATAATAGTTGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	LamC	FBgn0010397	FBtr0087512	3	1	1	202	2R	10459776	10459794	GCTACAGAATCTGGAGGAC		59	10459522	10459540	TTTCGAGATCCAACGACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Arc1	FBgn0033926	FBtr0087560	1	1	1	73	2R	10247478	10247499	GACATACAAGGATGTAGAAGGT		59	10247426	10247444	CCATACCGTAGAACAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18324	FBgn0033905	FBtr0087523	2	1	2	80	2R	10057018	10057085	CTTCTACATGATAAAGGCCCA		59	10057127	10057145	ATCGAAGTATGCTTGTGCT		59	NA	
Drosophila melanogaster	50	mam	FBgn0002643	FBtr0087598	2	1	3	170	2R	9925841	9925862	ACTCTTAATGTCCGAACTACTC		59	9926279	9926297	TTATTAGGCAACTTGTGCG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Aats-phe	FBgn0020766	FBtr0087594	1	1	1	82	2R	9857094	9857181	ATATGGTGGAGCAGATCAG		58	9857227	9857245	ATAAACAATGCGGAAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cnn	FBgn0013765	FBtr0100656,FBtr0087705,FBtr0087704,FBtr0100654,FBtr0087703	3	5	5	84	2R	9327821	9327904	GTCAGAGGAATCTACATCACC		59	9327757	9327775	AAGATCTACCTTGGCACAG		58	NA	
Drosophila melanogaster	50	CG17048	FBgn0033828	FBtr0087721	1	1	1	116	2R	9241633	9241651	GTTTAGCACTGTACAGGGA		58	9241385	9241553	ATAGACGCCAGTTATCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4676	FBgn0033815	FBtr0087743	2	1	1	61	2R	9123702	9123721	CATCTTCAACATCACATCCA		57	9123745	9123815	CCTTGCGGATACTAGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13148	FBgn0033767	FBtr0087848,FBtr0087847	3	2	2	283	2R	8574581	8575119	GAACCCTATCAAATAAGTGACG		58	8575421	8575439	TTATGCCACTTCTTCTGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8816	FBgn0033754	FBtr0087891	2	1	1	69	2R	8456895	8456968	AAGCTGATGGATCACTTGG		59	8456844	8456863	AATCACAGCCATGATACTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8888	FBgn0033679	FBtr0088022	2	1	1	90	2R	7954204	7964576	CTTCTATCACTTCGTCAAGGT		59	7954134	7954152	TTTCTTGGCCAAGTACCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	tou	FBgn0033636	FBtr0088094,FBtr0088092,FBtr0113066,FBtr0088091,FBtr0088093	3	5	5	180	2R	7467665	7467748	GAAATGGAGCTTCATGAGGA		59	7467439	7467457	TATCGAAGATCTGACGCAC		59	NA	
Drosophila melanogaster	50	CG30022	FBgn0050022	FBtr0088147	3	1	1	142	2R	7275163	7275181	TACTCTCCTGATACGAGGC		59	7274985	7275060	CCATTTGACCTTTATAGTCGTG		59	NA	
Drosophila melanogaster	50	CG13217	FBgn0033590	FBtr0088194	2	1	1	246	2R	7124006	7124024	GACACTCTTGGAATTGGAG		57	7123778	7123796	GAACTTCTTGCCGAATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12744	FBgn0033459	FBtr0088378	2	1	2	80	2R	5763454	5763530	TTCTTCAATCCGAATCTCTGG		59	5763572	5763590	CCTTCGCAAGACATATCCT		59	NA	InUTR
Drosophila melanogaster	50	CG30357	FBgn0050357	FBtr0088721	1	1	1	60	2R	4608893	4608911	AATAAGGATGTCGAAGCGG		59	4608851	4608872	TTAGCTCATCATTCATCTCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vps25	FBgn0022027	FBtr0088694	1	1	1	61	2R	4513072	4513142	CTTCTTTACACTACAGCCC		57	4513167	4513185	GATCTGTCCAGACCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scra	FBgn0004243	FBtr0100216,FBtr0088911,FBtr0088912	3	3	3	151	2R	3479240	3479258	AACCAGAAGGATCCTTGTG		59	3479372	3479455	GCAGCTAAATGTTGTTTCAC		58	NA	Nonspecific
Drosophila melanogaster	50	didum	FBgn0015933	FBtr0089745,FBtr0089744,FBtr0089743	2	3	3	89	2R	3393451	3393469	GAAAGTCTACAGATGCGTG		58	3393522	3393597	CTCAGACTCCAATTGACGA		59	NA	
Drosophila melanogaster	50	CG9422	FBgn0033092	FBtr0086120,FBtr0086121	1	2	2	72	2R	2579672	2579690	TAGTCACACGCCAAATACC		59	2579725	2579800	AAGCCATCTATAGTATCCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17018	FBgn0039972	FBtr0085958,FBtr0085957,FBtr0085956	3	3	3	80	2L	22365254	22365275	TCAGTTATACTCGAGATTCCTC		58	22365314	22365386	ATGGGACATCCTTTAGAAGTC		59	NA	
Drosophila melanogaster	50	Nhe2	FBgn0040297	FBtr0081467,FBtr0081466	3	2	2	84	2L	21121226	21121590	AGATCTTAAGGGAGCTGAG		57	21121638	21121656	ATTTCGCCTCATAACTTCC		57	NA	
Drosophila melanogaster	50	CG2611	FBgn0032871	FBtr0081387	3	1	1	70	2L	20650645	20650663	AGCTACTATGTGTACGTGC		59	20650697	20650715	CTTCGTATCTCGTCCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40174	FBgn0058174	FBtr0100564	1	1	1	77	2L	20257978	20258100	GATTTCGCCATCGTTTGTC		59	20257919	20257937	GTGGTTACGAGTAGAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)37Cc	FBgn0002031	FBtr0081164	2	1	2	180	2L	19123220	19123238	GATCTACACCATTCTCGGC		59	19122755	19122773	CAGAATAAAGCCGAACTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13258	FBgn0032582	FBtr0080853	3	1	1	78	2L	16292714	16292962	CAGAATTGTGCTCTTAGCTG		58	16292655	16292673	GATCTTCACCCAATCCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or35a	FBgn0028946	FBtr0080781	1	1	1	80	2L	15622531	15622550	ATTTGGTTTGGTGCTAAGAC		58	15622417	15622489	GAGGGAATCCGTAGTAAAGG		59	NA	
Drosophila melanogaster	50	mRpS23	FBgn0051842	FBtr0080566	3	1	1	127	2L	13834816	13834835	CATTTGGTACGATGTGTACG		59	13834647	13834726	CTTTATGCAGCTTTGCTCG		59	NA	Nonspecific
Drosophila melanogaster	50	b	FBgn0000153	FBtr0080542	1	1	1	110	2L	13822960	13822978	GTACAACATGTGGATGCAC		59	13823116	13823134	TTCCAAGTGACCGAATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6523	FBgn0032509	FBtr0080465	3	1	1	298	2L	13366730	13366812	TGAAACATCAGATCGAGGC		59	13367136	13367155	GATGTCAAATGTCTCGTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG16800	FBgn0032462	FBtr0080417	3	1	1	257	2L	12966898	12967107	GGAGCAGGAAGAAGATCAG		59	12967328	12967346	TTCTTGTGATGAGACTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cmet	FBgn0040232	FBtr0080215	3	1	1	114	2L	11266548	11266890	AAAGGAGCGTTATGATGCT		59	11266452	11266472	AGTCTGCTTTAGAGTACTCAG		58	NA	
Drosophila melanogaster	50	pim	FBgn0003087	FBtr0080001	3	1	1	138	2L	10363435	10363453	GCCTACGTATTGAATTGCG		59	10363618	10363636	ATAGTCCTTCATAGCCCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	nmd	FBgn0005322	FBtr0080065	3	1	1	109	2L	10303738	10303759	CTCGCTGATCACATATTATTCG		59	10303594	10303668	CTAGCCTCTTAAGCTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp4e3	FBgn0015035	FBtr0079925	3	1	1	88	2L	9748778	9748797	TTATGTTTGAAGGACACGAC		58	9748652	9748727	CAATTTCCTCTGGACATCG		58	NA	
Drosophila melanogaster	50	CG15828	FBgn0032136	FBtr0079844,FBtr0079843	2	2	2	80	2L	9654120	9654202	CTCGAAACAGATCACATAAGC		59	9654243	9654262	ACGATGGATGTTCACATCTC		59	NA	
Drosophila melanogaster	50	CG13110	FBgn0032111	FBtr0079805	3	1	1	60	2L	9350625	9350643	TAAGCCTGGACTGAAAGTG		59	9350664	9350685	CAAGTAGAACCTATCAACTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3748	FBgn0032110	FBtr0079804	1	1	2	62	2L	9343824	9343842	AATCCCGACATGAACTACG		59	9343868	9343949	AGTCGTGATAAACACTCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31609	FBgn0051609	FBtr0079769	3	1	1	229	2L	9097671	9097689	AGTAGTAGCAGTTGTCCCT		59	9097940	9098269	AACAGACGTGATTTGGAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9568	FBgn0032087	FBtr0079765	3	1	1	173	2L	9010955	9011044	CATGCAGCAAACTACACTC		59	9011179	9011199	GATTGTATAGACACTGCTGCT		59	NA	
Drosophila melanogaster	50	CG18661	FBgn0040964	FBtr0079763	2	1	1	61	2L	8998077	8998096	CGACTACATGTTCAACTCGA		59	8998120	8998138	ATAGTCCAATGGAGCAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12375	FBgn0031987	FBtr0079642	1	1	1	60	2L	8126110	8126130	GAAGATACTAGACATCAAGCC		57	8126070	8126088	TTCCTCAATGACATTGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5171	FBgn0031907	FBtr0079440,FBtr0079439,FBtr0114588	3	3	3	73	2L	7404146	7404230	GATGAAGATGCCATGAGAG		57	7404267	7404285	GTTTGAATCTGGGCATCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11321	FBgn0031857	FBtr0079386,FBtr0079385	3	2	2	81	2L	6761816	6761834	GTGTCCATGCTAAAGTGTC		58	6761678	6761771	TACTGCGATCGGTTATCTG		58	NA	
Drosophila melanogaster	50	CG15634	FBgn0031621	FBtr0077378	1	1	1	60	2L	4688103	4688121	TGAAGGGTAATCCTCTGGT		59	4688145	4688163	TAGGCATATAGGATGTGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16704	FBgn0031558	FBtr0077550	1	1	1	134	2L	3692499	3692517	ACTCATCTGCTGTCTTGTG		59	3692268	3692286	AAGCACTCGTTCGTATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34394	FBgn0085423	FBtr0112638,FBtr0112640,FBtr0112641,FBtr0112639	3	4	4	81	2L	3364934	3365439	CGTCTGATTGTGGACTACTC		59	3364872	3364890	AGACGTAGTTCTGTGACAC		58	NA	
Drosophila melanogaster	50	gkt	FBgn0031506	FBtr0077574	2	1	1	80	2L	3160732	3160810	CTACTTTGCCGGGATACTG		59	3160854	3160872	AACTTCCCAATGCTAAGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9879	FBgn0031444	FBtr0077700	3	1	1	60	2L	2665770	2665788	CTGTTCAAGGTGATCAGGA		58	2665812	2665830	TGAAGTTCATGATGTCCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33125	FBgn0053125	FBtr0077742	1	1	1	60	2L	2648513	2648533	CAGAGCAAACATTAATCCGAG		59	2648473	2648491	CCAGCATATTTCAGACTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	frtz	FBgn0086698	FBtr0077911	1	1	1	132	2L	1712033	1712051	AGAAATGGTTACTCCAGGC		59	1711859	1711939	TAGTCACATTGGTCGTAATGG		59	NA	
Drosophila melanogaster	50	Ipk2	FBgn0031267	FBtr0078074	3	1	1	75	2L	573291	573309	ACTTTGCTCATGTTTACCC		57	573234	573252	TCTATCAGGCTCTGGAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3345	FBgn0031240	FBtr0078127	2	1	1	108	2L	270510	270528	TTTAAACGACGATCTCAGC		57	270599	270672	CTGATAAGCTTTGTAGTGCA		57	NA	
Drosophila melanogaster	50	CG33635	FBgn0053635	FBtr0091612	1	1	1	60	2L	158566	158585	GACCTGGATGAATACTTGCT		59	158525	158543	ACTTGACGTTGAAACTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mt:tRNA:W	FBgn0013709	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR31603	FBgn0051603	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG40500	FBgn0069968	FBtr0111197,FBtr0111196	2	2	4	60	X	22292818	22292837	TATCGATATCGTTATGGGCG		59	22292860	22294277	TTTGTCAAGGATTGACTGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG7280	FBgn0030966	FBtr0074655	1	1	1	60	X	18741599	18741618	CCAACGAGCTATTCTATGTG		58	18741558	18741579	TAATCCTCCGGATTTATCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5172	FBgn0030830	FBtr0114539	1	1	2	269	X	17115619	17115637	CTGATCGCCTTAACCTCAG		59	17116549	17116567	ACACAAGTCAGCATCAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9699	FBgn0030772	FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369	1	6	7	76	X	16588098	16588116	CATTGAGGCGGTTAAATGC		59	16580767	16580785	TGTAATCGCGATCCTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	eIF5	FBgn0030719	FBtr0074149,FBtr0074144,FBtr0074148,FBtr0074147,FBtr0074146,FBtr0074150,FBtr0074145	3	7	7	131	X	15882571	15882661	TTCGATCACAAGAATGAGC		57	15882458	15882476	AGTTAAATTGGTCTCCGGA		58	NA	
Drosophila melanogaster	50	CG15333	FBgn0029989	FBtr0071124	1	1	1	60	X	7913822	7913842	GGTGATAACGCTTTGATTCAG		59	7913782	7913801	GGGAGCGTATTTGATTACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3585	FBgn0023458	FBtr0070939	1	1	1	80	X	6135812	6135830	CATCAAGTGCATTGCTCTG		59	6135687	6135771	ATGTCCCAGATCTTAATGTCAC		59	NA	
Drosophila melanogaster	50	raptor	FBgn0029840	FBtr0070885	1	1	1	60	X	5981265	5981286	CCTTAGGCACATTTATTAGCTC		58	5981226	5981246	TCGATATTATTGGCCTGTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4660	FBgn0029839	FBtr0070886	2	1	1	195	X	5973808	5973826	TTGTACCACATGAACAACG		58	5973505	5973649	CCCAGTAAATAATCCGCGA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Cyp4d14	FBgn0023541	FBtr0070426	3	1	1	89	X	2068504	2068522	TTTACCTACGTTCAGTCGG		59	2068370	2068389	CTTCATGGTGAAATCCAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3573	FBgn0023508	FBtr0070317	3	1	1	89	X	1818996	1819014	CTGCAGGAGCTAGATACTC		58	1819065	1819151	GTCCATCATCTTATCGATCCA		59	NA	
Drosophila melanogaster	50	CG9717	FBgn0039789	FBtr0085679	3	1	1	92	3R	26410832	26410850	GTCTTCATCCTCTACCAGG		58	26410567	26410585	ATCGGGAGTTAGCATTAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cnx99A	FBgn0015622	FBtr0110908	2	1	4	115	3R	25142077	25142233	CCAAAGAGGACTCATTCGT		59	25141980	25141999	TCTACAGTAGATGGTGAGGG		59	NA	
Drosophila melanogaster	50	CG12877	FBgn0039544	FBtr0100446,FBtr0085223,FBtr0085222	2	3	3	83	3R	23536240	23536258	CGGATTATACAGGAGAGCG		59	23536380	23536400	GCGCAGATAATACTTGATGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11790	FBgn0039265	FBtr0084760,FBtr0084761	2	2	2	89	3R	20874456	20874476	TGAGAAGGGATATACCCAGAG		59	20875008	20875026	AAATAACTTTGCAGTGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5768	FBgn0039198	FBtr0110867	2	1	2	115	3R	20212409	20212427	GTATTACAGCATCTGCACG		58	20212190	20212333	TAGCCCATGTTATCTACAACTG		59	NA	
Drosophila melanogaster	50	oa2	FBgn0038980	FBtr0084260	3	1	2	186	3R	18340889	18342355	CCCTCAAGAGTCTGTTTCC		59	18342505	18342523	CTCATGTGTATCTCCGACG		59	NA	
Drosophila melanogaster	50	CG7079	FBgn0038849	FBtr0084043	1	1	1	60	3R	16873852	16873873	TAAAGATCTACGAGCTAGTTCC		58	16873743	16873762	TTGTCTAGCCACATAATCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31203	FBgn0051203	FBtr0083926,FBtr0083924,FBtr0083923,FBtr0083925,FBtr0083927	1	5	5	86	3R	16575021	16575039	GATGGAATTACGGAAAGCC		58	16575088	16575199	GAACATAACCCTAAACACGG		58	NA	
Drosophila melanogaster	50	CG6006	FBgn0063649	FBtr0113477	1	1	2	132	3R	11995620	11995638	CAATACCATAATGCCGGTG		58	11995734	11995819	GATCTTGTTCAGTAGCGAC		57	NA	
Drosophila melanogaster	50	Zeelin1	FBgn0038294	FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034	3	4	5	122	3R	11002152	11004016	ACTACAGCCGAACAATTCC		59	11001978	11001996	GCTTGTCCCTCAAGTAGAG		59	NA	
Drosophila melanogaster	50	CG8863	FBgn0038145	FBtr0082751,FBtr0082754,FBtr0082753,FBtr0082752,FBtr0082755	3	5	5	91	3R	9210099	9210118	TTATCAGGCATGAGATGACC		59	9210172	9210190	GAACTGGATGATCAACGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14681	FBgn0037820	FBtr0100118	1	1	2	130	3R	6517164	6518078	CAAATTGGAACCGAACCAC		59	6518172	6518190	AGTAGTCCGTTGCAAATCC		59	NA	Nonspecific
Drosophila melanogaster	50	pum	FBgn0003165	FBtr0081993,FBtr0081991,FBtr0081992,FBtr0081990	3	4	5	92	3R	5043824	5043935	GACGACAACGATAAGTCAC		58	5043750	5043768	TGAGTTTGTGACCTGATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2698	FBgn0037536	FBtr0081784	3	1	1	108	3R	3828159	3828284	CGTATACGTGCTCATTTCC		58	3828356	3828374	TATCCACATGGATTGTCCG		59	NA	
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199	3	14	15	133	3R	1100031	1100465	GAGCACAACGTATTTGGTG		59	1099916	1099934	TACATATTCTCGCCAGTCC		58	NA	
Drosophila melanogaster	50	chb	FBgn0021760	FBtr0089462,FBtr0089460,FBtr0089461	1	3	3	60	3L	21172075	21172093	CAATGTGAACGATGTGACC		59	21172116	21172135	GCTAGATTCGAAAGATTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Indy	FBgn0036816	FBtr0075083,FBtr0075082,FBtr0075081	1	3	3	86	3L	18824243	18824263	GTGGAGTACTGTAATCTACAC		57	18824113	18824195	GAGGCCAAAGTGTAATCTG		58	NA	
Drosophila melanogaster	50	CG5642	FBgn0036258	FBtr0076022	1	1	1	161	3L	12136976	12136994	AAACTGGCATCTTTCATCG		58	12136774	12136851	GTAGAAGTCCAACTCGGAG		59	NA	
Drosophila melanogaster	50	CG32094	FBgn0052094	FBtr0076081	1	1	1	82	3L	11806613	11806631	AACACTCCAGGAAGTTACC		58	11806486	11806504	AACAGACAAGTGTTGTGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14135	FBgn0036193	FBtr0076111	2	1	1	181	3L	11685610	11685628	AGATCAGAGGAAGAACTCG		58	11686325	11686346	CTCGTTCTTTGATTCTTCAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33490	FBgn0053490	FBtr0089526	1	1	1	90	3L	11566886	11566964	AAGTATTCGTGGTATCCCT		57	11566814	11566832	ATTCTAGCAGAGATCGGAC		58	NA	
Drosophila melanogaster	50	CG32062	FBgn0052062	FBtr0076289	3	1	5	193	3L	10580768	10580787	ATCCAAATCTACGCTTCCAG		59	10582611	10583232	TTAGGTTTCTACACCAGCC		58	NA	
Drosophila melanogaster	50	CG13312	FBgn0035931	FBtr0076587	1	1	1	79	3L	8799328	8799346	GCCAGTATATCTACTGCAC		57	8799267	8799285	ATCGAAGTACATGGATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	melt	FBgn0023001	FBtr0100141,FBtr0076917	1	2	2	81	3L	7134394	7134470	AGTCAACGGAAATAGCGAG		59	7134515	7134533	GGTCCTGCTGGTATTATCG		59	NA	
Drosophila melanogaster	50	msl-3	FBgn0002775	FBtr0076926,FBtr0076927	3	2	2	86	3L	7117435	7117511	GTTATGTCCACTGTCTGCA		59	7117367	7117385	ATACAGCAAGTGGTCATCC		59	NA	
Drosophila melanogaster	50	LanA	FBgn0002526	FBtr0077014	2	1	1	83	3L	6199126	6199144	CATGTGGTTACAGTTCAGC		58	6198992	6199079	TTGTGGAGAACCAAGTCTC		59	NA	
Drosophila melanogaster	50	mad2	FBgn0035640	FBtr0077113	1	1	1	82	3L	5805863	5805884	CTAACCATTCTAATGTCCAAGG		58	5805741	5805820	TTCGAGAGCCATTCTTCAG		59	NA	
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713	1	5	8	94	3L	5692112	5697030	GTTCCTTCGCAAGATTTCG		59	5697088	5697106	TATATGGTGACGCCATGAC		59	NA	
Drosophila melanogaster	50	CG14995	FBgn0035497	FBtr0073274,FBtr0073273	1	2	4	183	3L	4097663	4097681	CTACGAGGATGCATACCAG		59	4095866	4097518	GTAGTATTCCTCTTTCGTGGG		59	NA	
Drosophila melanogaster	50	Gr64d	FBgn0035486	FBtr0073197,FBtr0073198	2	2	2	120	3L	4033402	4033470	CTCATCTTTGCAATGGCTG		59	4033554	4033572	AAATGCTCATGGAGGAACC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14980	FBgn0035470	FBtr0073180	2	1	1	272	3L	3897932	3898013	TTTCTGAATGCTGACCAGG		59	3897678	3897696	GTCCGCAATGATACTAAGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11537	FBgn0035400	FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117	1	5	5	80	3L	3130292	3130310	GGTCTCGGTCTTTATAGCC		59	3130170	3130248	CCAAACACTTGCATGAAGG		59	NA	
Drosophila melanogaster	50	CG1275	FBgn0035321	FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906	1	4	4	62	3L	2253685	2253787	GTATGGCAACTCCATTCTG		58	2253641	2253659	AGCTTCAGAGTCTTCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	zormin	FBgn0052311	FBtr0110858,FBtr0110856	3	2	4	136	3L	2125346	2125365	GATGTTAGCAGGGAGATCAG		59	2124604	2125249	CATTTGGTTCCGTATTGAGAG		59	NA	
Drosophila melanogaster	50	rno	FBgn0035106	FBtr0072531,FBtr0072532	1	2	2	89	3L	197405	197425	CGAACGAAATGGTATTCTGTG		59	197278	197354	ATAGCCATTGTCCTGATGG		59	NA	
Drosophila melanogaster	50	Pof	FBgn0035047	FBtr0072327,FBtr0072328	2	2	2	91	2R	20558283	20558302	TGCAATTTAGACAGAACAGC		58	20558417	20558435	TAGTAAACAACCTGTGGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG30193	FBgn0050193	FBtr0071948,FBtr0071949,FBtr0071946,FBtr0071944	2	4	7	76	2R	18813126	18814633	GGCTTATAATATTGTTCTGCGG		59	18814670	18814688	CTTGACATCCTTGGTCCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG34204	FBgn0085233	FBtr0112397	3	1	1	62	2R	17684053	17684071	GGCTGTACGTCTAGTAGAG		58	17684095	17684115	CCAATGCATGTAATTAGACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pcl	FBgn0003044	FBtr0086735	2	1	1	239	2R	14024861	14024879	CTGTCAGCCATAAGATCAC		57	14025140	14025214	AAACAAAGAACATATCGCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5522	FBgn0034158	FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026	3	6	6	89	2R	12676159	12676301	ACTACACTATAGCAGCCTC		57	12676354	12676372	AAATAACCGCATCCAACTG		58	NA	
Drosophila melanogaster	50	CG10102	FBgn0033927	FBtr0087559	1	1	1	152	2R	10249467	10249485	ATAGACCAGCTCAATTCCG		59	10249184	10249202	CATGTAGATCTGGTAGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4643	FBgn0043010	FBtr0087762,FBtr0087763	3	2	2	77	2R	9108960	9108978	AAGAACTACGAGTTCCTCG		58	9108838	9108856	GTAGACAGCGGATACTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30035	FBgn0050035	FBtr0088074,FBtr0088073	3	2	2	101	2R	7561243	7561261	ATTGATGGCAATCTCTGCA		59	7561325	7561403	TAGAAGAATCTTTCTGCCCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12129	FBgn0033475	FBtr0088395	1	1	1	82	2R	5921490	5921508	CTCTGGAGAAGTCAAGGAG		58	5921605	5921623	AAAGCTCCTTATCGATGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Opbp	FBgn0050443	FBtr0086109	3	1	1	82	2R	2542550	2542568	ATAAACGCTGTGGTAAACG		58	2542613	2542693	AAGTTATCCACGTCAAACAC		58	NA	
Drosophila melanogaster	50	dream	FBgn0033051	FBtr0086028	3	1	1	60	2R	1908911	1908988	AAATGCAATCCAAAGACCG		59	1908869	1908889	ACGTACTTAGAGGTAAGAGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	smi35A	FBgn0016930	FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289	1	5	5	80	2L	14189225	14195743	GAGCTAATGAGCTTGAACCT		59	14189164	14189182	GAAGCGTCGTATGAGACTC		59	NA	
Drosophila melanogaster	50	Lip2	FBgn0024740	FBtr0080123	1	1	1	161	2L	10702988	10705038	AGTTTATCAAGAAACGCCAG		58	10702784	10702805	CGTAGTTAAAGGCTTCTAACAG		58	NA	
Drosophila melanogaster	50	CG31716	FBgn0051716	FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012	3	6	6	95	2L	10400665	10400738	GAAGCAGAGTAACAGATGC		58	10400797	10400815	TTAATATGGGTGCTTGCTG		57	NA	
Drosophila melanogaster	50	CG16947	FBgn0031816	FBtr0079271	1	1	1	80	2L	6460477	6460570	CGTGAGATTTGGTAAGTACAC		58	6460417	6460436	CATCCATGACAATGGTACTG		58	NA	
Drosophila melanogaster	50	Chd1	FBgn0016132	FBtr0077674	2	1	1	182	2L	2980569	2980648	AATCCCGCGATAGATACAG		58	2980313	2980331	ATCCATAGTAATTGGGCGG		59	NA	
Drosophila melanogaster	50	Rab5	FBgn0014010	FBtr0077793,FBtr0077798,FBtr0077796,FBtr0077794,FBtr0077797,FBtr0077795	2	6	6	202	2L	2360795	2360983	CTGCATAAACAAGCCTCAC		59	2360548	2360569	TCGTTCTTAGGTAGTTTCTTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CR32658	FBgn0040859	FBtr0073628,FBtr0073626,FBtr0073627	1	3	3	132	X	11985664	11985685	GCTTAGTCTAGGAATCAATTGC		59	11985841	11985859	CATCAAGTGTGCGTTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14191	FBgn0030981	FBtr0074665	2	1	1	118	X	18976013	18976031	GATATAGCGGCGGATACAG		59	18976112	18976131	GATGATCTTAATCGTGCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7033	FBgn0030086	FBtr0071291,FBtr0071289	1	2	2	122	X	8985099	8985117	CGAGCTCAAGTCCATACAG		59	8985203	8985453	GCATTCTCAATACGCTGTG		59	NA	
Drosophila melanogaster	50	CG32736	FBgn0052736	FBtr0071008	3	1	2	167	X	6905631	6905649	AACACATGAGTCCGTACAG		59	6905780	6905859	AAGTGCGGTAGAAATTGGT		59	NA	InUTR
Drosophila melanogaster	50	Pp2C1	FBgn0022768	FBtr0070685	1	1	1	107	X	4577451	4577533	CCCAGTACCTTTAGATGCT		58	4577362	4577380	TATCTCGCCGATTAGATGC		59	NA	
Drosophila melanogaster	50	CG14238	FBgn0039429	FBtr0085014	2	1	1	81	3R	22285334	22285416	TCACAAGGAGGAACATACAG		59	22285459	22285478	CAGGATCACATTGAGTACGA		59	NA	
Drosophila melanogaster	50	RpS27	FBgn0039300	FBtr0084868	3	1	1	192	3R	21072286	21072304	ACTTCATGGACGTGAAGTG		59	21072046	21072065	ATAATTTGTGGTTCATCGCG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG34027	FBgn0054027	FBtr0100082	2	1	1	80	3R	20929603	20929672	GAATCACAGAGGAGAACGA		58	20929541	20929562	TAGCATACACTCTAGAGAACTC		58	NA	
Drosophila melanogaster	50	Mpk2	FBgn0015765	FBtr0084581	3	1	2	174	3R	19977715	19977830	CAATGCAATGATATGCGCA		59	19977483	19977579	GTATTGATTCTCTGTTCCACG		58	NA	InUTR
Drosophila melanogaster	50	CG5346	FBgn0038981	FBtr0084289	1	1	1	80	3R	18347502	18347763	ATGAGAAGCTCAAGACTGC		59	18347440	18347458	CACGGATATAGTGCTGTCG		59	NA	
Drosophila melanogaster	50	CG31262	FBgn0051262	FBtr0083412	1	1	1	81	3R	13044929	13044950	TGGATCTGAGAAGATAGATGAG		58	13044800	13044888	TACCCGATACAAAGTGATGG		59	NA	
Drosophila melanogaster	50	CG11769	FBgn0038441	FBtr0083296	1	1	1	100	3R	12339391	12339409	CATCCCATTAACAACAGCA		57	12339473	12339491	GATATGAACCGGACTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6218	FBgn0038321	FBtr0083119	2	1	1	116	3R	11165161	11165180	TTATTTCAGGAACCGGATCC		59	11164872	11165082	GATACGAGATGTACCAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	3	7	12	160	3R	11122417	11125003	AGAAATACGATGAGGTTGC		57	11126526	11126544	CTTCTCCTCAGAGACTTCC		58	NA	
Drosophila melanogaster	50	CG18746	FBgn0042103	FBtr0081775	3	1	1	86	3R	3615232	3615253	CGATCTGAACTTTAATCGATGC		59	3615017	3615186	ACTTGACTAGGTACCCTCAG		59	NA	
Drosophila melanogaster	50	MED31	FBgn0037262	FBtr0078856,FBtr0078857	3	2	2	82	3R	468366	468479	CCAACTATCTAAACTTCCTTGC		59	468520	468540	CCAGTACTGCAGATACTTCAG		59	NA	
Drosophila melanogaster	50	CG14569	FBgn0037123	FBtr0078456	3	1	1	69	3L	21724443	21724461	TTCCCTTCGATTTACCCAG		58	21724392	21724410	CCATAGGTGTTATCAGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7707	FBgn0036703	FBtr0075212	2	1	1	81	3L	17237075	17237093	CAACGTATTCAGTGCTGAG		58	17237138	17237218	TCGAAATTGTCGCAATAGG		58	NA	
Drosophila melanogaster	50	CG3919	FBgn0036423	FBtr0075716	1	1	1	81	3L	14404841	14404859	GAGCTTTCTGAATTCGGAG		58	14404904	14405146	AAATTGTGTTGCCTCAACG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Rac2	FBgn0014011	FBtr0076867	1	1	1	60	3L	7427532	7427550	ATCAGCTATACGACCAACG		59	7427490	7427508	AATAGTTGTCGAACACCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14826	FBgn0035750	FBtr0076833,FBtr0113151	2	2	2	60	3L	7227964	7227982	GGAATTCATGGGACATCGA		59	7228004	7228024	CTTCAAAGACCCACTATTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trio	FBgn0024277	FBtr0072648,FBtr0072646,FBtr0072645,FBtr0072649,FBtr0072644,FBtr0072647	3	6	6	80	3L	998876	998894	CCGAATACATAGTCAGTGC		57	998722	998832	AGTTACTCAGATCCAGACG		58	NA	
Drosophila melanogaster	50	Kaz1-ORFB	FBgn0063923	FBtr0072492,FBtr0100224	1	2	6	90	3L	217695	217713	AGTACAATCCAATCTGCGG		59	217767	217785	ATATACTCACTTAGGCCGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Unc-89	FBgn0053519	FBtr0091464,FBtr0113464	2	2	2	80	2R	19886318	19886336	CTACATCAGGCAGACTCTG		59	19886180	19886274	AGATCCTTGATCGTCAGAC		58	NA	
Drosophila melanogaster	50	CG13539	FBgn0034833	FBtr0071998	1	1	1	60	2R	19072703	19072721	TCACTATGAAGTCCACGTC		58	19072745	19072763	ATCTACGATTGGAAACGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13501	FBgn0034684	FBtr0071804	3	1	1	60	2R	17947347	17947419	AAGTTCTGGGTATATTCCTGG		58	17947307	17947325	CTGAAGATCTCGGCTAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	LBR	FBgn0034657	FBtr0071711,FBtr0071712	2	2	3	98	2R	17608823	17609371	GGTTTCCGAGGTATCATCG		59	17609432	17609451	TTAAATGCTTTGTTCGGTGC		59	NA	
Drosophila melanogaster	50	CG15118	FBgn0034418	FBtr0086590,FBtr0086589	3	2	5	127	2R	15024323	15024464	ATCGACCAGAACGATAAGG		58	15024214	15024232	TACTCATAGGTCGCATTGC		59	NA	
Drosophila melanogaster	50	GstE8	FBgn0063492	FBtr0086676	1	1	1	60	2R	14295953	14295971	TATTACGAGGAGGCATGTG		58	14295995	14296013	TGAATTTCTTGAGGAGGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6429	FBgn0046999	FBtr0087044	1	1	1	72	2R	12760754	12760772	GATCACTTGGGATCAGTGG		59	12760808	12760895	AGAACTATCCGTCAATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5065	FBgn0034145	FBtr0087108	2	1	1	81	2R	12509108	12509190	AAGATCAGAACCTACTGTGTC		59	12509233	12509251	AGTTTGAGCTTCTCATCGA		58	NA	
Drosophila melanogaster	50	Nup62	FBgn0034118	FBtr0087150	3	1	1	61	2R	12233077	12233095	TAGACAACTTGAACGAGGC		59	12233120	12233138	TCCGATCTGTATGATGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dg	FBgn0034072	FBtr0087258,FBtr0087257,FBtr0087256	1	3	3	100	2R	11972593	11972678	TTTATGGCCTACCTCTGGA		59	11972511	11972529	ACTTATCTCCACGGTTTCC		58	NA	
Drosophila melanogaster	50	shot	FBgn0013733	FBtr0087619,FBtr0087617,FBtr0087620,FBtr0087616,FBtr0087621,FBtr0087618	2	6	6	83	2R	9762420	9762438	GCGACAGATTGAACAACTC		59	9761956	9762374	ACAGCTTGTCTGTTTAATGC		59	NA	
Drosophila melanogaster	50	CG9328	FBgn0032886	FBtr0081416,FBtr0081415	3	2	2	116	2L	20813271	20813289	GATCCTGCCTAAGAAGCTC		59	20813444	20813462	TCTGATTTCTGGTTCAGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11019	FBgn0040998	FBtr0081359	1	1	1	67	2L	20427180	20427198	CATAACCGATTCCGTCTCC		59	20427227	20427247	GAATATAGCTATTGCCAACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)37Bb	FBgn0002021	FBtr0081177	1	1	1	64	2L	19051030	19051110	AGAAGGATGACACGTATGC		59	19050984	19051002	GAATTGCTGACAAAGACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2816	FBgn0031564	FBtr0077536	1	1	1	115	2L	3703599	3703617	AGGTCTGAGCATTTGAAGG		59	3703810	3703881	TGCAGGCATAGTTTCACTC		59	NA	Nonspecific
Drosophila melanogaster	50	tRNA:CR31333	FBgn0051333	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:P:90Cb	FBgn0011945	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:Y1:85Ae	FBgn0012028	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me18S-G1952	FBgn0082950	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-2b-2	FBgn0046823	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:G3:35Ba	FBgn0011862	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Ppr-Y	FBgn0046697	FBtr0113889	3	1	1	130	YHet	162097	191734	TGCATGAATCTATACAGGAGTC		59	191904	191922	TCGGAGTTCAATAGGAACG		59	NA	
Drosophila melanogaster	50	CG32820	FBgn0052820	FBtr0070053	2	1	2	252	X	21484496	21484637	GAACATGAATCGCAACCTC		59	21484262	21484280	GATGTGCAGTGGTATCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	sol	FBgn0003464	FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676	2	4	4	83	X	21228148	21228166	AGAGCTACAATGTGGTGTC		59	21228210	21228300	GAACGATGATTACTTGTCTCTG		58	NA	
Drosophila melanogaster	50	CG33491	FBgn0053491	FBtr0089603	1	1	1	75	X	20073272	20073290	ATTAAGCAGGAGTTCGAGC		59	20072823	20072841	TGTAGTCACCAGAGGTCTC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG14223	FBgn0031053	FBtr0074758	1	1	1	60	X	19554280	19554299	TTTAGTCACTTCCACTCGAC		59	19554239	19554257	CTATGCCCACTCCAATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CoRest	FBgn0053525	FBtr0091483,FBtr0091484	3	2	5	98	X	19422847	19422935	AAACTTTCCTACGATTGCC		58	19422997	19423015	ATCTGGTCGAGATTGTAGC		58	NA	
Drosophila melanogaster	50	vav	FBgn0040068	FBtr0074677,FBtr0074678	3	2	3	253	X	19157183	19157201	CATCAAGTTGTTCCTGGAC		58	19157984	19163303	TATTGTCGGTGGTAGTGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6617	FBgn0030944	FBtr0074615	2	1	1	83	X	18544259	18544277	CATCATCAAGGAGGAGTGG		59	18544194	18544213	AAGTAGTTCATGATCAGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8142	FBgn0030871	FBtr0074472	2	1	1	267	X	17737802	17737820	GATCTGTTCGAGATGTCGG		59	17737491	17737509	TGATCTGCAGATACTCGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12995	FBgn0030826	FBtr0074401	1	1	2	62	X	17104096	17104114	GTATTTGCGGTCGAATGTG		59	17104052	17104070	TTTACTGCTACCAACTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4678	FBgn0030778	FBtr0074320,FBtr0074319	3	2	3	115	X	16602670	16602690	CGGTAAAGGATTGGATATCCA		59	16602767	16603420	GTAGGTCTGGAACATGGAG		59	NA	
Drosophila melanogaster	50	Arp14D	FBgn0011742	FBtr0112868,FBtr0074295	1	2	2	83	X	16444493	16446387	GATATCGAAGTCAAGGATCTG		57	16444430	16444448	GTTCTCCATCGGATAGGAG		58	NA	
Drosophila melanogaster	50	Chc	FBgn0000319	FBtr0112798,FBtr0074180,FBtr0112797,FBtr0074182,FBtr0074181,FBtr0074179	1	6	6	92	X	15722670	15722757	CTTTATCAGTGTTACGACTTGC		59	15722599	15722617	AATCAAATAGGGCATGGCA		59	NA	
Drosophila melanogaster	50	CG32590	FBgn0052590	FBtr0073988	2	1	1	60	X	14732897	14732915	GATGAAGTCTTTCAGCTGC		58	14732855	14732875	TGCCGTATTCCATATCATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32602	FBgn0052602	FBtr0073911	2	1	1	61	X	14181903	14181921	AAGCCTACAACTCTGAAGC		59	14181946	14181964	GTCGTCTTCTGAGAAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0469	FBgn0040153	FBtr0113318	1	1	2	176	X	14100667	14100685	ATAACTTTGCCGACAAGGA		59	14099474	14100397	CTCTGGTAACGATGAGCTG		59	NA	
Drosophila melanogaster	50	CG9940	FBgn0030512	FBtr0073844,FBtr0073845	3	2	2	81	X	13580650	13580670	GGACATTAATCCTATTGGTGG		58	13580523	13580607	GGGCAGGTTGAATTTATCC		58	NA	
Drosophila melanogaster	50	CkIalpha	FBgn0015024	FBtr0073680,FBtr0073682,FBtr0073681	2	3	3	82	X	12550118	12550137	CTGAACTATTGTCGTAGCCT		59	12550182	12550381	GTTCTGAACAGTATGCGGA		59	NA	
Drosophila melanogaster	50	tomosyn	FBgn0030412	FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678	2	4	4	84	X	12531143	12531162	GAAACATACACGTTGTTCAC		57	12531208	12531302	GTTCTAACCACTTCAATTGC		57	NA	
Drosophila melanogaster	50	CG1824	FBgn0030403	FBtr0073658	2	1	1	74	X	12489035	12489053	GTTTGTGGACCTACTTGGA		59	12488904	12488922	TATAAGCCACTATCAGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1924	FBgn0030377	FBtr0073634	2	1	1	60	X	12071514	12071532	CACCGATGATCGATAACCC		59	12071472	12071490	GGATTGGCAATCTTTCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2467	FBgn0030355	FBtr0073594,FBtr0073595	1	2	2	139	X	11806290	11806308	TACACTACCAACGGATTGC		59	11805446	11805534	TTGAGATCAACCTGCATGG		59	NA	
Drosophila melanogaster	50	Upf1	FBgn0030354	FBtr0073596	2	1	1	88	X	11795424	11795442	GGACTTTGGGCAAATATCG		58	11795285	11795303	AGAACTGATTCAAGCTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10353	FBgn0030349	FBtr0114451,FBtr0114452	1	2	2	80	X	11773136	11773154	CATCCCTATAAACGTCCCA		58	11773013	11773095	GATAATGTTCTGGTAGATGACG		58	NA	
Drosophila melanogaster	50	Dlic2	FBgn0030276	FBtr0073441,FBtr0073443,FBtr0073442	3	3	4	121	X	11049247	11055097	AAAGGAGAACCTATGGTCG		58	11055182	11055200	CAATGAGTGTCGTCTTTCC		58	NA	
Drosophila melanogaster	50	CG16922	FBgn0030254	FBtr0073389	3	1	1	60	X	10850645	10850663	GGAGTCAAAGATCTCGGTC		59	10850687	10850705	CTCATTGGAGTTCATGGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myo10A	FBgn0030252	FBtr0073388,FBtr0110979	2	2	2	70	X	10855477	10855495	GTGATATACCGCTGGATCC		59	10855529	10856137	TTTGTGACAATGCATGAGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG34408	FBgn0085437	FBtr0114584	2	1	4	81	X	10120619	10120637	GATCTGAATGTTTCGCTGG		58	10120681	10121393	TCACTAAGGTGTCTGTTTCC		59	NA	
Drosophila melanogaster	50	btd	FBgn0000233	FBtr0071379	3	1	1	81	X	9589911	9589929	GATTATTACGGCAATGCGG		59	9589974	9589992	AACTCCATGGCTGATAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	e(r)	FBgn0011586	FBtr0071266	1	1	2	162	X	8799405	8799543	AAGGATATCACCATGTCGC		59	8799261	8799279	TAATGGTCGGAGTGTTTGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG11294	FBgn0030058	FBtr0071224	2	1	1	99	X	8587431	8587450	AGTATATGTTTGGCCGTAGG		59	8587351	8587369	GGATAGTGGGTCTTCTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11265	FBgn0030049	FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964	3	4	4	142	X	8459066	8459084	ATGATATCGGTCGAAGCAG		59	8459189	8459420	AATGATTCGACCCAGTATCG		59	NA	
Drosophila melanogaster	50	Cp7Fa	FBgn0014464	FBtr0114578	3	1	2	261	X	8365617	8365635	TTCCAATACATGAACGCCT		59	8366471	8366489	TGTCCACTATCTTCTCTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	ND75	FBgn0017566	FBtr0071180,FBtr0071181	1	2	2	171	X	8143115	8143194	GCACTATTAGCAAATCCATCG		59	8142964	8142982	TAGATAGCCACACTCTGCT		59	NA	
Drosophila melanogaster	50	CG1530	FBgn0029983	FBtr0071097	2	1	1	83	X	7834384	7834405	GGACATTTAAGTTCGAGTTTCC		59	7834448	7834537	TGAGGTGTTCCTTGTAATCC		59	NA	
Drosophila melanogaster	50	CHES-1-like	FBgn0029504	FBtr0071079,FBtr0112946	2	2	2	86	X	7580674	7580692	CAGAATAACCAGGGAGGAG		58	7580530	7580625	GATGTTGTGATTCTCCTCAC		58	NA	
Drosophila melanogaster	50	CG3032	FBgn0029928	FBtr0071032	3	1	1	60	X	6907503	6907523	TCAGATGAGATTCCAATCAGC		59	6907463	6907484	CCTGCGATAGATTTATGTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3075	FBgn0029905	FBtr0070974	3	1	1	61	X	6713512	6713531	GCAGGTTCAGATTATTCAGC		58	6713470	6713489	GCAGTGCGATAAAGTATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lag1	FBgn0040918	FBtr0070937,FBtr0070938	2	2	2	179	X	6152816	6152938	CATTTATAGCTCATCCGTGGA		59	6152514	6152532	TCACTGGAACGTATGTCAC		59	NA	
Drosophila melanogaster	50	CG4020	FBgn0029821	FBtr0070824	1	1	1	80	X	5800638	5800658	GGCGTACAACTATCAAATTGG		59	5800697	5800772	GCTGAAAGTTACCATACTTGAG		59	NA	
Drosophila melanogaster	50	CG17758	FBgn0029780	FBtr0070855	1	1	1	63	X	5549307	5549325	CTACGGCAGCTTCTATCTG		59	5549189	5549207	CGAATAGATCATGCTGCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ptp4E	FBgn0004368	FBtr0070725,FBtr0070724	3	2	2	95	X	4843694	4843785	CGAATTAGCTACCATGAGCA		59	4843842	4843861	GTACTCCGTAAGATTCGTGG		59	NA	
Drosophila melanogaster	50	CG2947	FBgn0029676	FBtr0100247,FBtr0070598,FBtr0070597	1	3	3	80	X	3685382	3685400	ATGTCTGATATACTGGGCG		58	3685518	3685536	GATGTTACCCGGATTTGAC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514	3	9	14	87	X	3215172	3215190	CGTTTCTATATCGCTCCGA		59	3215240	3219968	TCTTTAAACCTTTCGCTAGC		58	NA	
Drosophila melanogaster	50	CG3526	FBgn0040355	FBtr0070546,FBtr0113325	3	2	2	60	X	2787337	2787357	CAATAGGATGACCTTCTATCG		57	2787378	2787397	GGAGCAAAGATCATAGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF2B-epsilon	FBgn0023512	FBtr0070350,FBtr0070351	3	2	2	60	X	1814874	1814894	GATTCCATGATGGATTGTCTC		58	1814773	1814792	GCACTAGATGATTCTCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	arm	FBgn0000117	FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988	2	4	5	93	X	1787501	1787519	CAGAAGAAGCATATGAGGG		57	1786143	1787446	GTATCATATCCTTGCTGATGG		58	NA	
Drosophila melanogaster	50	CG11417	FBgn0024364	FBtr0070212	1	1	1	61	X	1250161	1250182	GGTAAACCTGAATGATAATCGC		59	1250204	1250222	GATCGATGTTGTACTCGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DAAM	FBgn0025641	FBtr0070241,FBtr0070240,FBtr0070239	3	3	3	82	X	1187405	1187424	TTCTCATGCTCGGTATACAG		58	1187282	1187360	AAAGAAGTCCAAATGCCTG		58	NA	
Drosophila melanogaster	50	y	FBgn0004034	FBtr0070071	2	1	1	66	X	250778	250796	TTACAAACTTCAGGAGCGA		58	250826	250844	CTTTAGTCGGGTATTCGGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CR40560	FBgn0085743	FBtr0114193	1	1	1	107	U	3558148	3558167	TCACGTACTGGTTAACTCTC		58	3558060	3558081	GGTGGTAAATTCCATCTAAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40968	FBgn0085546	FBtr0113959	1	1	1	60	U	6307298	6307319	CTACAATCGAGATAATGCTAGG		57	6307340	6307358	CTTTGAGCTTATCCAGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Caps	FBgn0053653	FBtr0091631	3	1	3	83	4	1247981	1248072	ATAATCACAGTACACCGTCG		59	1248867	1248885	CATCCTCTGAATCACCCTC		59	NA	
Drosophila melanogaster	50	ferrochelatase	FBgn0024891	FBtr0085849,FBtr0085850	3	2	3	123	3R	27637035	27637108	ATCGGAGCAATAATCTGCC		59	27636930	27636948	GTTTCCACAAATTTGGCCA		59	NA	
Drosophila melanogaster	50	CG34046	FBgn0054046	FBtr0100101	2	1	1	69	3R	27535056	27535074	AAGCAAGGCTCATACACTG		59	27535176	27535195	GTGCTTGTGACTTGTAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11340	FBgn0039840	FBtr0085766	1	1	1	60	3R	27128932	27128950	AGTCAAGTCCACATTTGTC		57	27128890	27128909	GGTCCTTCTATATCCATGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ctr1C	FBgn0062411	FBtr0085750,FBtr0085749	1	2	2	60	3R	26789596	26789616	GGAAGGGATCAGTATAATCGG		59	26789556	26789576	GCTGGTTGTAATTGTAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tmod	FBgn0082582	FBtr0085658,FBtr0113483,FBtr0085660	2	3	7	81	3R	26359220	26397539	GATCACTGAGACTTCTGCC		59	26397583	26397602	GTACTCACTCAGATCCTTGC		59	NA	
Drosophila melanogaster	50	jdp	FBgn0027654	FBtr0085681	2	1	3	94	3R	26345397	26345415	CGATGAGCTACAAACAGTG		58	26344287	26345339	GTGCATGGACTCTTTATCC		57	NA	
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085631,FBtr0085634	3	4	5	242	3R	26212044	26212062	CAGCGATCTGATCAATGTG		58	26211758	26211777	ATCTTCTTGAGAGTGGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7943	FBgn0039741	FBtr0085560,FBtr0085559	1	2	2	207	3R	25873516	25873534	TTTCGTACTGCGAGAAGAG		59	25873772	25873790	TACGTAAATTCGCTTGCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Axn	FBgn0026597	FBtr0085554,FBtr0085553,FBtr0085555	3	3	3	95	3R	25858740	25858816	CACCTTTCAGGTGATACCTC		59	25858874	25858892	AACTTGGGTATCAGCAAGG		59	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	1	8	8	120	3R	24962131	24962214	CCAATGATAAGCCCTACTCC		59	24962294	24962315	CCCATGAACATATAGGTTTCAC		58	NA	
Drosophila melanogaster	50	fkh	FBgn0000659	FBtr0085321	1	1	1	60	3R	24409596	24409614	TGGCCATTCAGAATAACCC		59	24409554	24409575	ATGATGAACTGATAGATCTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp6a18	FBgn0039519	FBtr0085183	1	1	1	60	3R	23305687	23305705	ACAGTCGGTCATTATTCCA		58	23305729	23305747	GGGTTCGGGATAAATACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14262	FBgn0039503	FBtr0085177	2	1	1	60	3R	23090359	23090377	ATCATTGATCCACGAACCC		59	23090317	23090335	GATGGCGTAGTTTAGAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14246	FBgn0040608	FBtr0100441	1	1	1	63	3R	22555431	22555449	TATCCGTGTTTGATAGCCA		58	22555476	22555494	ACATGGCTGAAAGTGAGAG		59	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG6478	FBgn0039436	FBtr0085057	1	1	1	261	3R	22449011	22449029	TCAGTGGTGGATCTATTGG		58	22448768	22448786	AATTCCTTCTGGAGCTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nf1	FBgn0015269	FBtr0100113,FBtr0084953,FBtr0084952	3	3	3	83	3R	21814618	21814636	AACATATTCTACCAGGCCG		59	21814681	21814754	CGTTTCTCCAATCTTGTATCG		59	NA	
Drosophila melanogaster	50	CG4685	FBgn0039349	FBtr0100571,FBtr0084891,FBtr0100570,FBtr0100569	2	4	4	192	3R	21452227	21452245	GATTCCAGCAATGCAAAGG		59	21451877	21452071	GTTTGTGCCACTTCTTGAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31370	FBgn0051370	FBtr0084829	2	1	1	124	3R	21129292	21129313	GGGAAACACTAAGAAAGATTGG		59	21129488	21129507	ATCAGTTTCTTCGTTAGTCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11839	FBgn0039271	FBtr0084766	1	1	1	60	3R	20896232	20896252	GAAACTACTGTCGAGAAACTG		58	20896271	20896292	CCGATTTATTGGTCTTATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34290	FBgn0085319	FBtr0112486	2	1	1	160	3R	20115194	20115212	ATCGTTGGATTCTATCCGC		59	20114891	20115017	ATTCCGAAAGTTGGATGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5991	FBgn0026576	FBtr0084537,FBtr0084536,FBtr0084538	2	3	3	60	3R	19878787	19878805	GATTCTTCTCCTACACCGC		59	19878829	19878847	TCCATGTAGATTTCGACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31365	FBgn0051365	FBtr0084406	1	1	1	87	3R	18950824	18950842	GCGAGGAGATATCTCAGGA		59	18950695	18950714	TGCTCATCTCTATCGTTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33092	FBgn0053092	FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144	1	7	7	268	3R	17705102	17705177	AGGACTTTCGGGATTTGTG		59	17705407	17705427	AGGTACCAGTGAAGTTAATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31178	FBgn0064912	FBtr0084138	2	1	1	62	3R	17699906	17699924	CCGTTATGGGATACTACGA		57	17699947	17699968	CACATTGGATCAAAGGATACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp93a	FBgn0038859	FBtr0084030,FBtr0084031	2	2	2	89	3R	16954934	16954952	AGAGCCTCAATAGTTGCAC		59	16954809	16954827	CAGGATAGAAGTCGCAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	H	FBgn0001169	FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917	3	4	4	172	3R	16452160	16452178	GTAGTACCGACCAAATGTC		57	16452313	16452498	CAGATTCAGTGGTAAGTCTG		57	NA	
Drosophila melanogaster	50	H	FBgn0001169	FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917	1	4	4	146	3R	16450480	16450500	GCATCATTCAGAAACTCATCG		59	16450608	16450776	AGGGTGGAGAAACTTTGTG		59	NA	
Drosophila melanogaster	50	mun	FBgn0053518	FBtr0091463	3	1	1	106	3R	16215763	16215781	GATAACAGTAATCCGGCCA		59	16213338	16215693	AACTTTAATCTGCACTCGC		58	NA	
Drosophila melanogaster	50	CG31213	FBgn0051213	FBtr0083824	1	1	1	84	3R	15801130	15801151	GATGGAATCTATCTCAGTTTGG		58	15801195	15801590	TCCCAAGTACATTAACTCCT		57	NA	
Drosophila melanogaster	50	CG7720	FBgn0038652	FBtr0083678,FBtr0083679	3	2	2	111	3R	14587405	14587423	CAGACAGTGACCATTCTGG		59	14586865	14587330	AGTTGAGACGTCCATTGTC		59	NA	
Drosophila melanogaster	50	CG31122	FBgn0051122	FBtr0083653	3	1	1	84	3R	14234395	14234413	GGAGAACCTCAATCTGGAC		59	14234151	14234350	CTCGTAGATGAATTGATTGAGC		59	NA	
Drosophila melanogaster	50	htl	FBgn0010389	FBtr0083548,FBtr0083550,FBtr0083549	2	3	3	60	3R	13873007	13873025	GAATCTCACACTGGTGGTC		59	13872965	13872986	CAAGTCCGATAGATATTTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS33	FBgn0038426	FBtr0083316	1	1	1	60	3R	12262127	12262146	GAACTACCTCTCAAATCGCA		59	12262086	12262104	CATGGACTTCTCGTTTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333	1	6	8	90	3R	12118541	12119712	CTATTAGGATCACATGCCGA		59	12119765	12119783	AAACCATGGCATTGTAACG		59	NA	
Drosophila melanogaster	50	Mhcl	FBgn0026059	FBtr0083231	2	1	6	127	3R	11895061	11895595	AACAGCCCGAGAATAACAG		59	11894952	11894973	GTTAACTCCATCCTAGTAGACG		59	NA	
Drosophila melanogaster	50	mor	FBgn0002783	FBtr0083238	1	1	1	110	3R	11795960	11795978	AATCCCATTATGTCCACCG		59	11795806	11795886	CACCTCATCCTTAATGGCT		59	NA	
Drosophila melanogaster	50	CG31461	FBgn0051461	FBtr0083166	3	1	1	82	3R	11546614	11546633	AATTATTCGTGTACGAGCTC		57	11546677	11546696	AATTCGATCAGGTATTGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31461	FBgn0051461	FBtr0083166	1	1	1	66	3R	11546565	11546583	AAACAGAAGCCTGAAGTCC		59	11546611	11546631	GCTCGTACACGAATAATTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eff	FBgn0011217	FBtr0083018	3	1	1	120	3R	10560129	10563151	GGAGATGATTTATTTCACTGGC		59	10559527	10559545	CTTTGGGTGGTTTAAAGGG		58	NA	
Drosophila melanogaster	50	CG31326	FBgn0051326	FBtr0082901	1	1	1	80	3R	10045403	10045421	TATTCCAACAATACCGCCC		59	10045284	10045359	GGCTTAGGATATACACCGC		59	NA	
Drosophila melanogaster	50	CG9920	FBgn0038200	FBtr0082917	2	1	1	74	3R	9923385	9923404	AATACGGTGGAACTAAGGTC		59	9923330	9923348	TAGCAAGGATATCGCTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31517	FBgn0047199	FBtr0082864	3	1	1	147	3R	9774637	9774655	AAATGCCATCAGAAATCGC		59	9774849	9774868	ATCTTTGGTCATCTCGACAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Dip-B	FBgn0000454	FBtr0082832,FBtr0082833,FBtr0082831	3	3	3	261	3R	9609662	9609680	ATTCGACAAGTCCTTCGAC		59	9609972	9610047	TTGAATGGGCACATAAAGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	1	8	8	283	3R	9504401	9504476	ACACGACGTAAATCAGGAG		59	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082805	1	1	8	85	3R	9488692	9488710	ATCATCCTCTCGTTATGGC		58	9488759	9491190	TGTAATCCTTGAGATCGCG		59	NA	
Drosophila melanogaster	50	CG33098	FBgn0053098	FBtr0082580,FBtr0082579	2	2	3	123	3R	8213638	8213708	AGCTGAAGGAAGTCTTCTC		58	8213795	8213813	ATCATCTGTTCCAGTAGCT		57	NA	
Drosophila melanogaster	50	CG10005	FBgn0037972	FBtr0082507	3	1	1	176	3R	7801293	7801311	ATAGAACCATACACCTGGG		58	7801025	7801155	GTGCTAATTTCCTGTACTCTG		58	NA	InUTR
Drosophila melanogaster	50	CG32852	FBgn0052852	FBtr0082449	1	1	1	61	3R	7468090	7468108	TACAGCAAACCAAAGACAG		57	7468047	7468065	CTGCCCGTTCTTACTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14712	FBgn0037924	FBtr0082418	2	1	1	118	3R	7455336	7455354	AGAATCGACCCATATTGCA		58	7455436	7455517	CTGTTGCGTATCTTCAGTG		58	NA	
Drosophila melanogaster	50	CG6782	FBgn0037912	FBtr0100465,FBtr0100462,FBtr0100461,FBtr0100464	1	4	4	236	3R	7386647	7386665	GTTAAGAAGACGGTGGGAG		59	7386370	7386388	CTTCACCTTGATGGTCTCC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	pros	FBgn0004595	FBtr0089718	3	1	3	147	3R	7202932	7203770	CTCCTACTTCTTCTACATTGAC		57	7203878	7203896	CATTTCACCAATTGTGCTG		57	NA	
Drosophila melanogaster	50	CG6608	FBgn0037852	FBtr0082334	2	1	2	66	3R	6707330	6707349	AACCGACCGAGATAATAGTG		58	6706827	6707302	TTAAGTATCATGCTCCACGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG31477	FBgn0051477	FBtr0082180,FBtr0113408	3	2	2	64	3R	5947865	5947883	AGCCATGTGAAGTTCACTC		59	5947911	5947929	TCACGTTCTACCTTCTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33784	FBgn0053784	FBtr0091785	2	1	1	100	3R	5894013	5894032	CCGACTTAGTTTACGATGGA		59	5894150	5894171	GTCATCATTCAGAACCATTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210	3	5	8	82	3R	5834567	5835034	TCTACGAAGGTTCAAACCG		59	5834503	5834521	GAGTCGGTGGATATCTCAG		58	NA	
Drosophila melanogaster	50	CG8147	FBgn0043791	FBtr0082060,FBtr0100522	3	2	2	60	3R	5321943	5321962	AGAAAGAACGATATCTTCGG		57	5321985	5322003	CATATGGAAGATCATCCGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8359	FBgn0037634	FBtr0081919	3	1	1	60	3R	4632461	4632479	AAAGGAACTGAGTTTCCTG		57	4632503	4632521	CAAGGATTCTACATCGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8036	FBgn0037607	FBtr0081882,FBtr0081881,FBtr0081883	3	3	3	189	3R	4499021	4499107	GATCACTACCAGCAAGGAG		59	4499259	4499278	CCTAATCCTTGAGGATCTCG		59	NA	
Drosophila melanogaster	50	CG9667	FBgn0037550	FBtr0081815	2	1	1	145	3R	3951660	3951739	CAGATACAGAATGCTGGCT		59	3951533	3951551	AACATCTTGGGACCATAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15186	FBgn0037448	FBtr0081674,FBtr0081673,FBtr0081672	2	3	3	97	3R	2319011	2319029	AGTTAACCAGATCCCTGGA		59	2319089	2319280	CAACTCGTCCATATTTGCAG		59	NA	
Drosophila melanogaster	50	CG1236	FBgn0037370	FBtr0078721	1	1	1	60	3R	1563269	1563287	CGGACTTAATCGTAGTCTG		57	1563311	1563329	GTGGCATTGAAGATTTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31550	FBgn0051550	FBtr0113409	2	1	3	220	3R	1312396	1312417	CCTAAGCCACAAATAAATCTGG		59	1312598	1313566	ATAAAGAAACCTTGTGGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG16708	FBgn0037315	FBtr0078804,FBtr0078803	1	2	2	124	3R	1185797	1185815	CTCCCGTTACAGTCATCTG		59	1185263	1185710	GCAAATTGCGAATATCACCA		59	NA	
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0110933	1	1	15	143	3R	1119478	1119796	AAGTATTCTCAAGCTCGCC		59	1119353	1119371	CATAGGTCATGTGACCCTC		59	NA	
Drosophila melanogaster	50	CG12173	FBgn0037305	FBtr0078821	3	1	1	118	3R	1081338	1081418	CGGATATTCCAGGAGAAGC		59	1081238	1081256	CGGAATCAACTCGAATCCA		59	NA	
Drosophila melanogaster	50	CG12582	FBgn0037215	FBtr0111225,FBtr0078964	3	2	2	130	3R	24474	24492	AAGACTCGTCCTATATGCT		57	24643	24739	TTACGACTTTCCCATTTGG		57	NA	
Drosophila melanogaster	50	CG41451	FBgn0084014	FBtr0111176	3	1	1	75	3L	22958320	22958338	GTGGACACAGTGTAAATGC		59	22958377	22958395	GGTCTCGTAAGCTTATCCA		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mes2	FBgn0037207	FBtr0078563,FBtr0078561	1	2	3	67	3L	22939650	22939668	CGATGTCATCAGAGAACGA		59	22943660	22943678	TATGGCCATAGGTTGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	jim	FBgn0027339	FBtr0078582,FBtr0100184,FBtr0078581	2	3	3	122	3L	22792357	22792375	CCCTCTTACTTCAAGGACG		59	22792193	22792211	CTTAAACTCCTTGTCGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hem	FBgn0011771	FBtr0078510	3	1	1	60	3L	22279435	22279455	CTAGGGTGGTAGATAACTTGG		58	22279395	22279414	CAGAAGATACTGAGATCCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7139	FBgn0027532	FBtr0078487,FBtr0078486	2	2	2	60	3L	22061030	22061049	CATTAAGAACAGGGTGAAGG		58	22060932	22061007	ATTAACTTCTTGCCATCGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	mub	FBgn0014362	FBtr0078469,FBtr0078468,FBtr0078470	1	3	4	154	3L	21914291	21914309	GAGATTCGCCAAATATCCG		58	21914425	21918297	GCAGTCTCCATTGATATTCTC		58	NA	
Drosophila melanogaster	50	CG33291	FBgn0053291	FBtr0078427	2	1	1	111	3L	21658719	21658737	CTTCTTCCAGCTAGAGGGA		59	21658811	21658892	ATTGGCGTTATAGACCTTGG		59	NA	
Drosophila melanogaster	50	CG5976	FBgn0036999	FBtr0078200,FBtr0078199	1	2	2	60	3L	20468718	20468737	TCTATCCGATAAGCTACACC		58	20468759	20468778	CACAACTCGAGGTATAAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32221	FBgn0052221	FBtr0074883	3	1	1	60	3L	19828244	19828263	CGCAACCGTATTTATTGAGG		59	19828286	19828304	CTCTTGTAGTTACGCACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14095	FBgn0036870	FBtr0074987	2	1	1	138	3L	19457373	19457391	TCCAATCCTGAACAGAGTG		58	19457253	19457271	ATAGTTCAAAGGTGCTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MESR6	FBgn0036846	FBtr0075026	2	1	1	60	3L	19086983	19087001	GAACGAATTCCTAACGGAG		57	19087025	19087043	AAAGTCGAGGTCTATGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	1	8	8	118	3L	16956803	16956821	AAGACCCATTGAAGGTAGC		59	16956901	16956979	CAATAGACCCTTGTGAATCAC		58	NA	
Drosophila melanogaster	50	Cpr72Eb	FBgn0036618	FBtr0075383	1	1	1	60	3L	16358183	16358201	TTCGGATACGATCAGTCAG		58	16358225	16358243	GTAACCATAGGCGTACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13070	FBgn0036586	FBtr0075462	1	1	1	63	3L	16256843	16256861	AACCAGAACGGATTGAAGG		59	16256888	16256906	TCATTGGGCTTGAATAGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32152	FBgn0052152	FBtr0075489	2	1	1	60	3L	16136081	16136099	ATCACGGTCATGAATGGTC		59	16136039	16136058	TGATGCCATCTACTTTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5389	FBgn0036568	FBtr0075446	1	1	1	201	3L	16091482	16091656	TAGTGCTGGAGGTATTCCA		59	16091821	16091839	AAATCCGACTTGACCTCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6151	FBgn0036533	FBtr0075543,FBtr0075541,FBtr0075542	2	3	3	63	3L	15809067	15809087	CCGTGGTATCTCAAATATGGA		59	15806715	15809042	AAAGAATGGCAAAGAAGGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Toll-6	FBgn0036494	FBtr0075614	3	1	1	60	3L	15331428	15331446	GCTCTTCTCGAATCTGGAC		59	15331469	15331488	GGAGGTTATCTGGTTCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7255	FBgn0036493	FBtr0110881,FBtr0100360	2	2	3	132	3L	15301821	15301841	TTTAGAGTTCCCTTTGTACCG		59	15301933	15302038	CAAGAAATACGGGTATACCCA		59	NA	
Drosophila melanogaster	50	CG13460	FBgn0036471	FBtr0114510	1	1	1	60	3L	15054491	15054509	GTGTCCAACAACATCTTGC		59	15054449	15054468	ATCCATAGGATCCATAGTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100042,FBtr0100039,FBtr0100040	2	3	6	60	3L	14206288	14223279	TGACTACGATTATAGGCTGG		58	14223301	14223320	CTGTGTATCTGACAGATCGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10743	FBgn0036376	FBtr0075814,FBtr0075813	3	2	2	103	3L	13507881	13507899	CTGCTATGAGGACAATTGC		58	13508025	13508045	GCATCTTTAGGTTTAGCTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33265	FBgn0053265	FBtr0076063	2	1	1	60	3L	11961459	11961480	ATTCCTGACACATCTACTACTG		59	11961420	11961438	CAACAGTGCTACTTTCGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	byn	FBgn0011723	FBtr0076039	1	1	1	84	3L	11927630	11928077	GCAACATCTCATCTCATAACTC		58	11928122	11928140	TGATGAATGGTGTAGCTGG		59	NA	
Drosophila melanogaster	50	Bmcp	FBgn0036199	FBtr0076115,FBtr0076114	3	2	2	120	3L	11715617	11715692	TATTGATGTAATCCGGACGC		59	11715775	11715793	CTGTACAGCACAGTCTAGG		59	NA	
Drosophila melanogaster	50	path	FBgn0036007	FBtr0076427	2	1	2	136	3L	9492179	9492274	TTAACATAGTGGACAGCGG		59	9490251	9490270	ATCAAAGTCATTTCCAGCCA		59	NA	
Drosophila melanogaster	50	CG4484	FBgn0035968	FBtr0076503	3	1	1	67	3L	9196708	9196726	TGGTGGCTAGATATCATGC		58	9196599	9196619	CTGTTTCAGTGGTACTATCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG4911	FBgn0035959	FBtr0076542	2	1	1	101	3L	9063737	9063815	CCTACAATGAAGAGATAAGCAC		58	9063657	9063675	GATCGCGTAAATCGTTGTC		59	NA	
Drosophila melanogaster	50	Fhos	FBgn0052030	FBtr0076577	1	1	2	86	3L	8790315	8791227	ATCGCAAATCATTACGTCG		58	8791274	8791295	CCTAATAGGTTTGTATCAAGGC		58	NA	
Drosophila melanogaster	50	CG6638	FBgn0035911	FBtr0076651	3	1	1	160	3L	8568786	8568804	AGAAACTAGGTGCTCTTGG		58	8568542	8568560	ATTGATGCACAGATTGGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Idh	FBgn0001248	FBtr0114548	3	1	9	287	3L	8353912	8353933	GCTCTAACATTCTAAATTCGGC		59	8350919	8350937	TTGGCTCTTAATGGAGTCC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG8281	FBgn0035824	FBtr0076748	3	1	1	68	3L	7905729	7905747	ACGGATTGAAGGTGATGTC		59	7905779	7905797	TGTATGTCTGGATGAAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pbl	FBgn0003041	FBtr0076773,FBtr0076774	3	2	5	160	3L	7895366	7896304	ATGGAAACTCATTCTGGGA		58	7895150	7895242	GATTGACCAGCTTTGTCAG		58	NA	
Drosophila melanogaster	50	RhoGEF4	FBgn0035761	FBtr0076885	2	1	2	81	3L	7315586	7315662	GTTGAAAGAATCCGTCAAGG		59	7315524	7315543	ATACTGGGTAATTTCCTGCT		58	NA	
Drosophila melanogaster	50	CG14823	FBgn0035734	FBtr0076908,FBtr0076905	2	2	4	190	3L	7060746	7060764	TGCCACGGATAATATTCCG		59	7061142	7061160	CATAGCTACGCACAATACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Lcp65Ae	FBgn0020640	FBtr0077056	1	1	1	87	3L	6131091	6131109	TTGGAATCCGATGTTGGAC		59	6130962	6130980	ACTTCAACTGTCCCTTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112712,FBtr0112708,FBtr0114646	1	3	8	116	3L	5661233	5661801	TCTATTGAGTTCGTTCAGGT		58	5661880	5661898	ATGCAGGTGATGTTAACAG		57	NA	
Drosophila melanogaster	50	CG10635	FBgn0035603	FBtr0077154	2	1	1	236	3L	5360788	5360806	CATGGATGACTTCAAAGCG		59	5360570	5360588	ATTTCCGCCTTGATAACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10671	FBgn0035586	FBtr0077178,FBtr0077177	3	2	2	61	3L	5137876	5137894	TACTATCACCGCATGATCG		59	5137833	5137851	AAGTACCAGGTGAGTATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Src64B	FBgn0003501	FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321	2	5	5	158	3L	4596190	4596208	ATCTGAGCTTCATGAAGGG		59	4595932	4596069	TCTCAAAGAACCAGTCTTCG		59	NA	
Drosophila melanogaster	50	CG33764	FBgn0053764	FBtr0091765	2	1	1	100	3L	4267161	4267244	TTAGCAAAGTAAAGGTGCG		58	4267079	4267097	CGATGTTAGGAATCTGCAC		58	NA	
Drosophila melanogaster	50	CG14998	FBgn0035500	FBtr0113135	2	1	6	98	3L	4127159	4128322	TGTTAGTGAATGCAGGCTC		59	4127079	4127097	ACATGTTTGTCGATGTGGA		59	NA	
Drosophila melanogaster	50	CG14984	FBgn0035480	FBtr0073169	3	1	1	109	3L	3951476	3951759	AATCGAAGAGTCTCGTCAC		59	3951385	3951403	GGCTATATCCGATACCGTG		59	NA	
Drosophila melanogaster	50	CG32264	FBgn0052264	FBtr0113431,FBtr0113430,FBtr0073188	3	3	5	138	3L	3718987	3722173	CAATAACTATTCGCTCAACAGG		59	3718870	3718888	GTAGACGATATGGCCATCG		59	NA	
Drosophila melanogaster	50	CG12187	FBgn0035367	FBtr0072945	3	1	1	224	3L	2678605	2678623	TATTCACGACGTGGATTCG		59	2673271	2673591	TTCCACTCGAGTATCTTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11815	FBgn0035299	FBtr0072852	2	1	1	68	3L	1971110	1971129	TGTCTAAGAATCCACTTCGA		58	1971061	1971079	ACTTGGGCTTATCAGACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13925	FBgn0035291	FBtr0072838	2	1	1	68	3L	1921630	1921648	TGTAGAAAGCATCGAGGAG		58	1921680	1921698	ATATCGGCGACTATTTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12099	FBgn0035232	FBtr0072829,FBtr0072828	1	2	2	94	3L	1556339	1556357	CTTGCCTTTGACTTGTCAG		58	1556209	1556282	GAATGTCCTCCTTAAAGAGC		57	NA	
Drosophila melanogaster	50	Aplip1	FBgn0040281	FBtr0072626	2	1	2	115	3L	1197304	1197538	AACAAGAAATGTGGCTCCA		59	1197617	1197635	TTGAGGGACAGAAATGAGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	RabX6	FBgn0035155	FBtr0072577	2	1	1	60	3L	690715	690733	CTTCATCACGGATACGGAC		59	690756	690775	GTATTCCCTATCGATGTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3344	FBgn0035154	FBtr0072609	3	1	1	72	3L	686599	686618	GTACAGGTTGATGTCCAGAG		59	686493	686511	CACATCGAATTTCACGAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17090	FBgn0035142	FBtr0072552,FBtr0072551	2	2	2	105	3L	569806	569887	CGGAATATGAGGTCCTTGAG		59	569954	569973	TTCTTCAGGATCTTGATGGC		59	NA	
Drosophila melanogaster	50	Kaz1-ORFB	FBgn0063923	FBtr0072488,FBtr0100851,FBtr0072493,FBtr0072490	1	4	6	110	3L	217695	217713	AGTACAATCCAATCTGCGG		59	217866	217884	GACAAATTCCCTTGTGCAC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG30424	FBgn0050424	FBtr0113375,FBtr0113377,FBtr0113376	3	3	3	98	2R	20853307	20853383	TACTTCGGGAATTCAGTCAC		59	20853228	20853246	TTGAAGTGGTCTTCAGTCC		59	NA	
Drosophila melanogaster	50	bs	FBgn0004101	FBtr0072271	1	1	1	202	2R	20235972	20262944	GAGGACTCGAAAGATGACC		59	20263110	20263128	TGATAGTTCAATGCTGGCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	Nop60B	FBgn0023184	FBtr0072258,FBtr0100213	3	2	2	86	2R	20064279	20064298	TTATGTCGACTACAATGCCA		59	20064347	20064426	CTTAACTTGCGTTTGCTGG		59	NA	
Drosophila melanogaster	50	tamo	FBgn0041582	FBtr0072281,FBtr0072282	3	2	2	152	2R	20017461	20017544	CTCTCAAGACCTATTCGGG		58	20017327	20017346	AAACATTCGTAACCTGATCC		57	NA	
Drosophila melanogaster	50	G-salpha60A	FBgn0001123	FBtr0072144,FBtr0072142	3	2	3	86	2R	19833781	19833984	CCAAGTGACGCAATAATGG		59	19834032	19834132	AGATATACGCAGAAACTCGTC		59	NA	
Drosophila melanogaster	50	CG5597	FBgn0034920	FBtr0072131	2	1	1	83	2R	19775910	19776008	CCACCATCACGATAATATCCA		59	19776053	19776071	CATCGAAGTATCCCTCCTC		58	NA	
Drosophila melanogaster	50	CG5357	FBgn0034862	FBtr0072017	1	1	1	78	2R	19345167	19345185	GGAGTCCAACCAGTTTACC		59	19345227	19345245	ATACTGCAGGAACTTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30194	FBgn0050194	FBtr0071954,FBtr0071955	2	2	3	96	2R	18946730	18946748	ATATGCCGCATTGATATCC		57	18946808	18946884	AAAGAGGGCTACAGTATCC		58	NA	
Drosophila melanogaster	50	CG32835	FBgn0052835	FBtr0071992	3	1	1	208	2R	18841030	18841048	GAAATCTTGACGGTAGCGA		59	18839410	18839429	TTAATCAAGAGATGCAGCGA		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	jbug	FBgn0028371	FBtr0071917	2	1	3	90	2R	18607247	18607266	TTCCGGTCAGATGTTATCAG		59	18607112	18607194	TGGAGTACCTCAATGACAC		58	NA	
Drosophila melanogaster	50	CG10384	FBgn0034731	FBtr0071831	1	1	1	60	2R	18359023	18359042	GCGTACTTGTACTTGTACTC		58	18359063	18359083	ACAGTTAGTCCCTAAAGATCG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	a	FBgn0000008	FBtr0071763,FBtr0100521,FBtr0071764	3	3	3	83	2R	18025734	18025753	ATCGAGAACATCAACCACTC		59	18039198	18050428	GCATACTATGTTGGTGTTTCAC		59	NA	InUTR
Drosophila melanogaster	50	CG30280	FBgn0050280	FBtr0071759	1	1	1	102	2R	18001831	18001849	TCTCCACATATGATCGGGA		59	18001915	18001995	TTAAGGTTGCTGTCCAGAC		59	NA	
Drosophila melanogaster	50	Sara	FBgn0026369	FBtr0071641,FBtr0071642	3	2	2	117	2R	17373767	17373847	ATTATTAAGTGCGAGGACTGG		59	17373926	17373944	AAAGATCGAGAAGTGGCAG		59	NA	
Drosophila melanogaster	50	CG13436	FBgn0034532	FBtr0086229	3	1	1	80	2R	16525007	16525084	GGAGCTTATATTTCCGCAC		58	16525127	16525146	AACTCAACAATGTGGTTCAG		58	NA	Nonspecific
Drosophila melanogaster	50	bl	FBgn0015907	FBtr0086219,FBtr0086221,FBtr0086220,FBtr0086222	2	4	4	67	2R	16493081	16493099	GTCATGATCCCAACAACAG		58	16493192	16493210	CTTACCAATGATGGCACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8517	FBgn0034472	FBtr0086329	3	1	1	101	2R	15601690	15601708	TAGAAGATTATTCCGGGCA		57	15601773	15601791	TTTCTAGTCTCCACATCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp56b	FBgn0046880	FBtr0086480	2	1	1	60	2R	15586427	15586445	AAGAGTTTGCTTACCAGCT		59	15586385	15586403	TGTAGACAAAGTCACAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457	3	11	15	114	2R	15365199	15366254	CTTTCACTCTGGTCAAACC		58	15366332	15366350	GAGTTTGGAGAAGAAGCTC		57	NA	
Drosophila melanogaster	50	Scs-fp	FBgn0017539	FBtr0086552,FBtr0086553,FBtr0086554	3	3	3	136	2R	15280457	15280475	CTGAAGATGCAGAAGACCA		59	15280283	15280358	CAGATAAGCGACCTATCGAC		59	NA	
Drosophila melanogaster	50	CG18604	FBgn0034378	FBtr0086606	2	1	1	61	2R	14591365	14591383	CTCCAGTAATGTCACTGCA		59	14591520	14591538	GATTGAAGGCATATCGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Gint3	FBgn0034372	FBtr0086656,FBtr0086654,FBtr0086655	2	3	3	106	2R	14546145	14546222	ATGACTGCAAACTCATTCC		58	14546057	14546075	CAGCATTAGAAGGTCTTCC		57	NA	
Drosophila melanogaster	50	slim	FBgn0026173	FBtr0086692,FBtr0086693	3	2	2	158	2R	14331578	14331597	TTGAAACGTATCCCGATCAG		59	14331858	14331876	AATATGTGGAGAAGTCGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18536	FBgn0034322	FBtr0086758	3	1	1	109	2R	14182690	14182764	TGAGGAAACGATGGTTGAG		59	14182834	14182855	TGATGTAATCATAGAAGGGCTG		59	NA	
Drosophila melanogaster	50	sbb	FBgn0010575	FBtr0086767,FBtr0086766,FBtr0086765	1	3	3	132	2R	14175232	14175640	CAAATACGAAACAACTAGCTGG		59	14175121	14175140	CCAATATTCCACTCGTCCTC		59	NA	
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	2	8	8	98	2R	14032393	14032483	CAAGGAAAGAATTCTGAGAAGC		59	14032542	14032560	AATCATCGGATACAGACGC		59	NA	
Drosophila melanogaster	50	stau	FBgn0003520	FBtr0086783,FBtr0086784	1	2	2	110	2R	14007896	14007979	CAAGAAACCAGCAAAGAAGAG		59	14007806	14007824	TTGCTATTCTCCTCAGCTG		59	NA	
Drosophila melanogaster	50	CG6424	FBgn0028494	FBtr0086887,FBtr0086886	1	2	2	121	2R	13592685	13593866	TCGAGCAGAATTTGAACGA		59	13592582	13592600	CTCAAAGTACAGCAGTCCA		59	NA	
Drosophila melanogaster	50	CG10936	FBgn0034253	FBtr0086894,FBtr0086895	3	2	2	113	2R	13494136	13494155	TGCTACCATTAAGATCATCG		57	13493972	13494060	TAAACTTCGTTGAGCTGTG		57	NA	
Drosophila melanogaster	50	CG30463	FBgn0050463	FBtr0113379,FBtr0113381,FBtr0087113	1	3	5	162	2R	12566519	12566537	CAACATTTATCCCGAGCTC		58	12562745	12565926	CATCCAGTACTGATTTCCTC		57	NA	
Drosophila melanogaster	50	RpS15	FBgn0034138	FBtr0087124,FBtr0087123	2	2	2	100	2R	12458179	12458197	CATGATCATCGTACCCGAG		59	12457856	12457874	GGTAGTGACCGATCATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Syn2	FBgn0034135	FBtr0087093,FBtr0087094,FBtr0087097	1	3	5	86	2R	12442916	12442934	ATCAGTCGCAGTTGTAGTC		59	12442984	12443123	CATCATTAGAGGTACGGCA		58	NA	
Drosophila melanogaster	50	Syn2	FBgn0034135	FBtr0087095,FBtr0087096	1	2	5	118	2R	12442744	12443115	TCCTTCAGAAACAACTACCTC		59	12443195	12443213	GACACCTGTGGAAATTCCA		59	NA	
Drosophila melanogaster	50	Hmgs	FBgn0010611	FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146	3	5	5	60	2R	12227690	12227708	CAGAAGGATACTTCCAAGC		57	12227731	12227750	TGTGGAATAGGATAGCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8446	FBgn0034089	FBtr0114472,FBtr0114473	1	2	3	175	2R	12086286	12086305	CAATCCCACAGAGAAATGGT		59	12086443	12086521	TCATTAATCCCGCTTCCAC		59	NA	
Drosophila melanogaster	50	CG8445	FBgn0034088	FBtr0087246,FBtr0087245	3	2	2	211	2R	12083401	12083419	CAAATATGAACGCTGCTGG		59	12083149	12083226	CTGTACATCGTGACATCCA		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	mRpL34	FBgn0083983	FBtr0111011	2	1	1	71	2R	11986724	11986742	GGAATGCTAGGATGTCGAC		59	11986777	11986795	AATTGTGACGTCCTTTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30084	FBgn0083919	FBtr0113484,FBtr0111048,FBtr0100387,FBtr0087315	2	4	6	94	2R	11652754	11660562	TAATAATGTGTACCGAGGTGC		59	11652680	11652699	CTGCCTTATTCAGGATACCC		59	NA	
Drosophila melanogaster	50	Vha36	FBgn0022097	FBtr0087335	2	1	1	67	2R	11429525	11429543	ATCAAGATCACCAACCGTC		59	11429574	11429592	AAAGTCCTATCGATTCGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GalNAc-T1	FBgn0034025	FBtr0087332,FBtr0087331	3	2	2	206	2R	11401758	11401907	CTTCCATCCTTACAAATTCCC		58	11402075	11402093	TTCTTGAGGTACCACTCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34123	FBgn0083959	FBtr0114580,FBtr0114579,FBtr0110833,FBtr0113485	2	4	6	80	2R	11152374	11152394	ACGACTATATGATTCTGGAGG		58	11152253	11152333	ATACACCAATCTCGAATCCC		59	NA	
Drosophila melanogaster	50	Obp51a	FBgn0043530	FBtr0087420	3	1	1	62	2R	10912066	10912084	GTGTGGTAACACCATTCGA		59	10912022	10912043	CATACTTATCATAGCTCTCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10249	FBgn0027596	FBtr0087429,FBtr0112929,FBtr0087431,FBtr0087430	3	4	4	90	2R	10790219	10790298	GACAGTAATGGCAACACAG		58	10790147	10790166	CATCGCAAACCTTAGAATCC		58	NA	
Drosophila melanogaster	50	CG8233	FBgn0033897	FBtr0087582,FBtr0087584,FBtr0087583	3	3	3	84	2R	10037317	10037743	TTTGTTCCTCACAATGATGC		59	10037252	10037270	GAGTTATCACCTTTGGCAG		58	NA	
Drosophila melanogaster	50	CG30485	FBgn0050485	FBtr0087640	1	1	1	60	2R	9738414	9738432	TCAAGGGCACAAACTATGG		59	9738456	9738474	TTCTCACTACTGGTCACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17034	FBgn0033837	FBtr0087707,FBtr0087710,FBtr0087709	1	3	4	146	2R	9303454	9305088	CTCTGCACATATTCACGGA		59	9303067	9303085	TAATGATAGACTGCGGCAC		59	NA	
Drosophila melanogaster	50	CG17041	FBgn0033822	FBtr0087749,FBtr0087751,FBtr0113080,FBtr0087750	2	4	4	222	2R	9151041	9151059	GATAATGTGGCAAGACCCT		59	9151379	9151397	GTTCTCAATGGTGTTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nmda1	FBgn0013305	FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876	3	6	6	93	2R	8765642	8765662	GACGAACTTCATATTCTTGGG		58	8765511	8765587	CATGAGAACCTCTTTCGGA		58	NA	
Drosophila melanogaster	50	CG17574	FBgn0033777	FBtr0113077,FBtr0113078	2	2	4	160	2R	8739051	8739069	ATGATTCGGGCATCTACTG		59	8738404	8738423	CATTCTCGATAAGTCAGGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	sca	FBgn0003326	FBtr0087855,FBtr0087856	2	2	2	60	2R	8687283	8687503	AATGAAGAATAAGCTCACCC		57	8687526	8687544	GACATTCTGATGATGTGGT		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	S2P	FBgn0033656	FBtr0088063	2	1	1	114	2R	7730976	7730996	TACTACATCACAACCCTTGTG		59	7730815	7730903	GGCAGAAGATGAACTTTATTCC		59	NA	
Drosophila melanogaster	50	dare	FBgn0015582	FBtr0088176	2	1	1	119	2R	7179486	7179560	TGCTTTGAAGACTACGGAC		59	7179385	7179403	TCCTTAATGGTGAAGGCAG		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	3	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421093	TAGTAAGGTAGCAAAGTAGGGA		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	3	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421093	TAGTAAGGTAGCAAAGTAGGGA		59	NA	
Drosophila melanogaster	50	Cyp49a1	FBgn0033524	FBtr0088311,FBtr0088313	1	2	3	80	2R	6343081	6343099	CTTATTCGGAAGTACCGGG		59	6342946	6343040	TGTATGTTCCTATTAGTGGAGC		59	NA	
Drosophila melanogaster	50	CG33774	FBgn0053774	FBtr0091775	3	1	1	168	2R	5287558	5287765	AAAGAACGTGTTACTGTCTG		58	5287330	5287348	CTGTTAGCGGAAACATCCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG30349	FBgn0050349	FBtr0088650	2	1	1	95	2R	4796440	4796458	CAAGGAACCAAACTGAGTG		58	4796517	4796591	TTGTATCATCGCCTGATCC		59	NA	
Drosophila melanogaster	50	CG8740	FBgn0027585	FBtr0088712,FBtr0088713,FBtr0088711	3	3	3	195	2R	4644841	4644859	ACTATCGATATCTCGCTGC		58	4645018	4645093	ATACATTGAGCTCCTTGGG		59	NA	
Drosophila melanogaster	50	Dgk	FBgn0085390	FBtr0112581,FBtr0112580	2	2	4	80	2R	3738268	3738288	CCATTGTTAACCAGATGATGG		59	3736488	3738226	TCATCTCTTGCAGTATCGG		58	NA	
Drosophila melanogaster	50	CG1358	FBgn0033196	FBtr0088950,FBtr0088949,FBtr0088948	1	3	3	80	2R	3490154	3490638	TTGGATAAAGTGGGTCTTCG		59	3490093	3490111	CGAGAAGACCTTGATCCAG		59	NA	
Drosophila melanogaster	50	Cyt-b5	FBgn0033189	FBtr0088906,FBtr0088905	2	2	2	67	2R	3423029	3423047	GAGAGTTCTGTGAAGTCGT		58	3423078	3423096	AACTTGTAGAAGAGCGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111092,FBtr0111098	2	2	60	124	2R	3219879	3221904	TGAAAGTGAAGGTACCTCC		58	3219773	3219792	TTTCTTCCATGTAACTTGGG		57	NA	
Drosophila melanogaster	50	pwn	FBgn0003174	FBtr0088962	2	1	1	80	2R	3186192	3186210	AGGTGAACAACATCTACCG		59	3186254	3186331	TTTCATCCAGCTTGATGGT		59	NA	
Drosophila melanogaster	50	CG1845	FBgn0033155	FBtr0089021	1	1	1	205	2R	3162387	3162601	ATCAATAGAAGAACCGCCA		58	3162200	3162218	GACAGGACGTGATTCAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11060	FBgn0033149	FBtr0089045	1	1	1	60	2R	3065135	3065153	CCAGAACTTCTCTTACCGA		58	3065176	3065195	ATATAAGTCCTTGAGAGCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	coro	FBgn0033109	FBtr0086208,FBtr0086209,FBtr0086207	1	3	3	139	2R	2752071	2752153	TCGGTATTTCGAGGTAACG		59	2751950	2751968	GATAGAACTTGGCGACCTC		59	NA	
Drosophila melanogaster	50	CG8343	FBgn0040502	FBtr0085988	1	1	1	60	2R	2067467	2067485	GCTCGTAAGCATTACATCC		58	2067508	2067527	GTAGTTGAAGAGGAAGTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	EcR	FBgn0000546	FBtr0086008,FBtr0086010,FBtr0086009	1	3	5	105	2R	2039492	2039582	ACTTGATGTTACCGAGGAC		58	2039405	2039423	GTTGTAGCTGTGATTCTGC		58	NA	
Drosophila melanogaster	50	mle	FBgn0002774	FBtr0086031,FBtr0100576,FBtr0086030	2	3	3	83	2R	1864960	1865499	CCTGCATGTTATTCTTATGTCG		59	1864898	1864916	GGTACTTCCAATACGGGAC		59	NA	
Drosophila melanogaster	50	CG1344	FBgn0027507	FBtr0086034	2	1	1	60	2R	1543253	1543274	CATGATGAACAGGATGATAAGG		58	1543294	1543313	AAAGCGTTGATACATTCGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41121	FBgn0069930	FBtr0111251	3	1	2	121	2L	22708253	22708272	GAGTAGTGATGTATCTCCGC		59	22708356	22709162	GAACGTGGTCTAAAGAACG		58	NA	
Drosophila melanogaster	50	CG3651	FBgn0032974	FBtr0085937	3	1	1	142	2L	22123550	22123569	GTATACTGCTATGGAGGTCC		58	22123674	22123751	TGATTGAGGAGCTGTAGAC		58	NA	
Drosophila melanogaster	50	CG31700	FBgn0051700	FBtr0085933	1	1	1	94	2L	22066975	22066993	TAAGGACTACCGGGTAGAC		59	22069218	22069236	TTGTCCTTAATGGCATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2201	FBgn0032955	FBtr0100510,FBtr0085921,FBtr0085922,FBtr0100511,FBtr0085923	1	5	5	83	2L	21615151	21615169	GTCTCATCTGTTCTGGAGC		59	21615024	21615105	CGAGCAATACCATATTCCCA		59	NA	
Drosophila melanogaster	50	His2A:CG33856	FBgn0053856	FBtr0091860	1	1	1	60	2L	21523779	21523798	GAATTATTCCGCGTCATCTG		59	21523821	21523839	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His2A:CG33817	FBgn0053817	FBtr0091821	1	1	1	60	2L	21458276	21458295	GAATTATTCCGCGTCATCTG		59	21458318	21458336	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr39a	FBgn0041244	FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510	3	4	4	99	2L	21297474	21297492	AAGAACCTTCGACAGAAGC		59	21297607	21297627	CCATATACGTGAAGATTGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9331	FBgn0032889	FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081418,FBtr0081419	1	5	5	64	2L	20826944	20826962	CTGTGCTGGTTAACATTGC		59	20827051	20827069	TTTCAAAGCCTCGTAGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31677	FBgn0051677	FBtr0081407	2	1	1	61	2L	20603980	20603999	TGTGGTTATCAATATGGCCA		59	20603938	20603956	TGTATCTCAGCTGATGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vls	FBgn0003978	FBtr0081347	2	1	1	96	2L	20064569	20064641	CAGTTATTAATCAATGGGCCC		59	20064493	20064511	TGTAGATGAACTCATGGCC		59	NA	
Drosophila melanogaster	50	sNPF	FBgn0032840	FBtr0081327,FBtr0081326	2	2	2	93	2L	20055044	20055062	GAAGTCCGTAAACCAATGC		59	20055185	20055203	GGATGGATGAGGTTTCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13965	FBgn0032834	FBtr0081308	2	1	1	60	2L	19962080	19962100	TCCATCGGAGAATTAACTCAG		59	19962040	19962058	TTGTTGGTGATTCTGTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18094	FBgn0032791	FBtr0081243	1	1	1	60	2L	19491276	19491294	CTGCTCTATGACATCGCTC		59	19491318	19491336	AGAAGTTGAGAAGCTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18563	FBgn0032639	FBtr0081003	2	1	1	60	2L	17457296	17457315	CAACAAATGAACCCATTCAG		57	17457255	17457273	CCTTCATGTCTCACAATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6860	FBgn0032633	FBtr0080969,FBtr0080968	1	2	2	80	2L	17372753	17372772	GTCATTTGGCCAACTATGTG		59	17372627	17372713	CCATTGTCAACTTATTGACACC		59	NA	
Drosophila melanogaster	50	CG32832	FBgn0052832	FBtr0080960	3	1	1	106	2L	16878867	16879025	TTTAAATGGTCCTTGGTGC		58	16878779	16878797	CAAATTAAGCCCGTGACTG		59	NA	
Drosophila melanogaster	50	chif	FBgn0000307	FBtr0080838,FBtr0080839	3	2	3	60	2L	16347755	16347774	CAGATACAGTATCTCCTCCG		58	16347714	16347732	TTCCTTAGTTTCTGCTTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spel1	FBgn0015546	FBtr0080630	3	1	2	101	2L	14364513	14364531	TCCATTCTTGGAAGAGTGG		58	14364595	14364690	AGTGGCAGTCCTTATTATGC		59	NA	
Drosophila melanogaster	50	loqs	FBgn0032515	FBtr0080497	3	1	3	236	2L	13383871	13383889	GCTCGATACTCAACTACCG		59	13385050	13385068	CATAGGTCACCTCGAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sfmbt	FBgn0032475	FBtr0080492	2	1	2	121	2L	13175761	13175779	GTAGTCAGTACAACTCGGA		58	13175268	13175676	ATTCATGTCCAAAGTTGGC		58	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090013,FBtr0090027	1	3	17	90	2L	12731059	12737970	TCTTTATGGTTCTGGCTACC		59	12738023	12738041	AAGTAGTACAGGAAGGCGA		59	NA	
Drosophila melanogaster	50	JhI-21	FBgn0028425	FBtr0089655,FBtr0089656	1	2	2	110	2L	12054491	12055096	TATTTACACCGAATCCGTGG		59	12054400	12054418	GATCTTGTGATGCATGTGC		59	NA	
Drosophila melanogaster	50	CG31720	FBgn0051720	FBtr0113413,FBtr0089788	1	2	2	71	2L	10236397	10236415	ATACTCAGTACTGCGTGGA		59	10236226	10236244	TCTTGAAGCGAATCCTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13125	FBgn0032163	FBtr0079898	3	1	2	109	2L	9924157	9924307	GATACGGTAGAAGGCATCG		59	9924066	9924084	ACATAGAGGGACAATGGGA		59	NA	
Drosophila melanogaster	50	Bka	FBgn0010520	FBtr0079874	3	1	1	61	2L	9895478	9895496	GTAATGCACAGCTTAAACG		57	9895520	9895539	TCGAATCTGATCCTTAAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4036	FBgn0032149	FBtr0079870	2	1	1	60	2L	9791081	9791099	GCATGGTCCTACTGTATCC		59	9791123	9791141	GGACATGATTGGTATCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mcr	FBgn0020240	FBtr0079543	3	1	1	107	2L	8075846	8075927	GTATCGAGATTCCAGATGC		57	8075757	8075775	GGAACTTCTCAATGTCCAC		58	NA	
Drosophila melanogaster	50	Rapgap1	FBgn0085403	FBtr0112605,FBtr0112603	1	2	4	149	2L	7501515	7536282	TTTCTCAGAACCACCATCG		59	7501384	7501402	TCGAGTGATTCATCGAGTG		59	NA	
Drosophila melanogaster	50	CG31909	FBgn0051909	FBtr0079406	2	1	1	92	2L	7257997	7258016	GAGAAATCGTAGAGAACCCA		58	7258071	7258089	AAGCGTCTACTTCATCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snRNP70K	FBgn0016978	FBtr0079355	1	1	1	65	2L	6970353	6970373	GATTTCCGTGATATGGATGTC		58	6970308	6970326	AAATGTGGGATAGCCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9171	FBgn0031738	FBtr0079162,FBtr0079161	3	2	2	117	2L	5770099	5770117	ATTCTGGCTTCAGACATCG		59	5769931	5770019	CCAATGGAAATACTCTGGGT		59	NA	
Drosophila melanogaster	50	CG14021	FBgn0031702	FBtr0079078,FBtr0079079	3	2	2	111	2L	5331345	5331363	CAAGCTGATCATATGCGAC		58	5331189	5331272	CAGCTTGTTATCTGGATACAG		58	NA	
Drosophila melanogaster	50	CG7742	FBgn0031690	FBtr0079092	2	1	1	88	2L	5213324	5213400	GCTACATGACTACGATATTGAG		58	5213257	5213275	CCTTGAAGACCAGTTTGTC		58	NA	
Drosophila melanogaster	50	ine	FBgn0011603	FBtr0077447,FBtr0077448,FBtr0077446,FBtr0077449	1	4	4	106	2L	4468742	4468760	AAGACTGTCGAAGAACGTC		59	4468589	4468672	ATACCCAGATGGCAAAGAG		59	NA	
Drosophila melanogaster	50	RpL27A	FBgn0010410	FBtr0077452	3	1	1	95	2L	4457497	4457748	GTTAAATTCGGCTACTACAAGC		59	4457423	4457441	GTCCTCAGCCTTCTTAGAG		58	NA	
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305	2	4	10	180	2L	3626210	3634251	TATGTCATGGAAGATGGACG		59	3626049	3626067	TGATGGTCTGAAAGCACTG		59	NA	
Drosophila melanogaster	50	CG3104	FBgn0031473	FBtr0077687,FBtr0077686	3	2	2	285	2L	2852250	2853261	TGTCGCTTAAGAAGGAGAC		59	2850468	2850486	ATCAGAATCTTCACCACGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG31948	FBgn0051948	FBtr0077788,FBtr0077787	1	2	2	60	2L	2415611	2415629	CAACTATGAGATCGTGGCT		59	2415569	2415590	GCAGTGATTCTCAATGTATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3557	FBgn0031423	FBtr0077790	1	1	1	60	2L	2385091	2385109	TAAGGGAACAGATAAGCCG		58	2385049	2385067	TCTTTCAGCTGTTGACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4267	FBgn0031405	FBtr0077751	1	1	1	80	2L	2242932	2243566	CGTCATCAAACAAGGATAGTC		58	2243607	2243626	GTATGCGTTCTTAACCTTCC		58	NA	
Drosophila melanogaster	50	CG18131	FBgn0031343	FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934	1	4	6	62	2L	1500147	1500167	GCCAGCTTATATCTAATGACC		58	1500037	1500123	ATATGTTGACTTGAGTGGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG5397	FBgn0031327	FBtr0077920	2	1	1	60	2L	1241657	1241675	CCAATTGTCTCGGAAACAG		58	1241699	1241717	CGATCTCATCACCATGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3662	FBgn0031285	FBtr0100469,FBtr0078012	2	2	2	99	2L	823319	823337	CATTATCGACACTACCACC		57	823397	823418	GCTCATCTTCTTTATGAGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11885	FBgn0031253	FBtr0078089	1	1	1	77	2L	421333	421351	AACAAACCTCGACAAATCG		58	421274	421292	GTGGAACACTATCTCCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Adaptin	FBgn0015567	FBtr0089488,FBtr0089489	3	2	2	81	2L	411176	411195	CTATTCGTGAGGAAATGGTG		58	411046	411132	ATAACGTCCACATACCAGG		58	NA	
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	2	7	8	166	2L	119224	119295	TAATGCAGACTGATGTCCTG		59	119020	119038	TTGAGCCATGGTGTTTAGG		59	NA	InUTR
Drosophila melanogaster	50	D2R	FBgn0053517	FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461,FBtr0070034	2	5	5	81	X	19905532	19905553	TATAGCCATGGATGTGATATGC		59	19905400	19905490	TGTCACAGCGATGTATCTG		59	NA	
Drosophila melanogaster	50	tgy	FBgn0030984	FBtr0074702	3	1	2	146	X	19020803	19020821	GATTGGTTCATAAAGGCGG		58	19020312	19020399	CATGTATGACTCGTTCTTCTG		58	NA	
Drosophila melanogaster	50	Rbp2	FBgn0010256	FBtr0074281,FBtr0074280,FBtr0074279	3	3	3	259	X	16344026	16344045	ACTTTGAGGTGAAGTACGTG		59	16344401	16344419	CTTCTGGAAACCGTCTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33178	FBgn0053178	FBtr0073963	3	1	1	131	X	14977061	14977297	GTTTCCGGTATAAGATCTTTCC		58	14977540	14977558	AATACGGCAGAATGTTCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14408	FBgn0030581	FBtr0073991,FBtr0073990	1	2	4	107	X	14722054	14723176	TTCAGCAGATCTTCAGAGC		59	14721965	14721985	GAGTTCCTCCACTATAATGGC		59	NA	
Drosophila melanogaster	50	CG11590	FBgn0030545	FBtr0073899	3	1	1	60	X	14094666	14094686	GTCGAGTCTATCTACAAGTGG		59	14094705	14094726	TCATCAACAGATATTCGGAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sno	FBgn0005410	FBtr0073736,FBtr0112848,FBtr0112849	1	3	4	97	X	13093002	13093092	ATCTACGGCTAAAGGTGTC		58	13092923	13092941	TCTCATCGTAGAGACCCAG		59	NA	
Drosophila melanogaster	50	CG4404	FBgn0030432	FBtr0073694	3	1	1	122	X	12799064	12799660	ATATCAAGGACACGGTTCG		59	12798960	12798979	TCGATAGGTAGTATTTGCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32702	FBgn0052702	FBtr0071370	1	1	1	80	X	9458595	9458673	CTCCTATAACTACGAGCACC		59	9458534	9458553	TGGAATTTGCTTGGAAAGTG		59	NA	
Drosophila melanogaster	50	CG34026	FBgn0054026	FBtr0100081	2	1	1	93	X	9428052	9428131	AGTCGGACAACCTAAATGC		59	9428188	9428206	CCTCCACTGACCAATACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17717	FBgn0029877	FBtr0070944,FBtr0070943	1	2	2	157	X	6484266	6484349	TATCATCTTGCAGCAGGTG		59	6484470	6484488	GCATAAATCGTGTGGTGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12535	FBgn0029657	FBtr0070534,FBtr0070535	2	2	2	184	X	3287219	3287237	GGAACATGTTCCAATTGCT		58	3286920	3287071	GAGATCGTTACGATTCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13759	FBgn0040376	FBtr0070437	1	1	1	60	X	2477586	2477604	CAGAAGATCTTTCGTTCCC		57	2477627	2477646	TATACTTGCTGTAGGGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3690	FBgn0040350	FBtr0070185	2	1	1	98	X	844062	844080	CCAACAATCTGATTGTGGC		59	843917	844002	GTCCACTGGTCATTATAAGCT		59	NA	
Drosophila melanogaster	50	CG40188	FBgn0058188	FBtr0113822	3	1	2	171	U	2233171	2233189	ACAGACGAGATCTCTTTGC		59	2233323	2233403	ATTACATTGCAAAGGTTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40162	FBgn0058162	FBtr0113815	1	1	1	69	U	588244	592700	AATCTCATTCGAGACGGAG		58	588193	588211	CCAAATCGTTGTTAACGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	ncd	FBgn0002924	FBtr0085534	3	1	1	116	3R	25631523	25631541	ACAACGAGTGTCTTCAGAG		59	25631366	25631444	CTTTCTCATGTATTGCTTGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31076	FBgn0051076	FBtr0085079	2	1	1	61	3R	22814874	22814952	CTATAGCAACTACATTGCACAG		59	22814834	22814852	GAACCAGTCCATGATCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5028	FBgn0039358	FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290	1	5	5	106	3R	21507753	21507830	AACTACGGTGACCATTACG		59	21507900	21507918	ATACTGGCACTGATCATGG		59	NA	
Drosophila melanogaster	50	Ets96B	FBgn0039225	FBtr0084696	2	1	2	164	3R	20618822	20618840	AAGACGTCACCTATACCAC		58	20618968	20620056	TTTGACATTCACGTTGCAG		59	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100632,FBtr0100623,FBtr0100629,FBtr0100624,FBtr0100633,FBtr0084683,FBtr0100638,FBtr0100635,FBtr0084685,FBtr0084684,FBtr0100627,FBtr0100631,FBtr0100636,FBtr0100634,FBtr0100622,FBtr0100625,FBtr0100637	3	17	17	85	3R	20532015	20532266	CCATGATAACAGAACTGGTC		57	20532311	20532332	CAGATAGAGTTCTGTATCTGGA		58	NA	
Drosophila melanogaster	50	CG10232	FBgn0039108	FBtr0084471	3	1	1	67	3R	19545577	19545662	GATATACCCACGAAATTCTACC		58	19545531	19545550	CAATGGGTGATTATGCAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5391	FBgn0038943	FBtr0084242	1	1	1	163	3R	18159404	18159703	CACAAATGATCCTGCTGAG		58	18159259	18159277	GTTGTAGTTCCCAGTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17274	FBgn0038835	FBtr0083989,FBtr0083990	2	2	2	165	3R	16678290	16678432	CTTTGTTACAACAGGGAGG		57	16678143	16678161	TGATTCAAATAGTCCACGC		57	NA	
Drosophila melanogaster	50	CG5466	FBgn0038815	FBtr0083913	2	1	1	61	3R	16445306	16445324	CTCGTTGGACCAGATTACC		59	16445349	16445600	TTGAGTCCAGATTGGAACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5614	FBgn0038359	FBtr0083171	2	1	1	60	3R	11605814	11605832	CAATCAATCGGAGGATCAC		57	11605854	11605874	GAGGAACTCCATAATCATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14868	FBgn0038330	FBtr0083109	1	1	1	75	3R	11194555	11194631	CAAGACAATGTTGGATGCA		58	11194498	11194516	AATGGTGTCCTCATTTGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Ravus	FBgn0038128	FBtr0082779	2	1	1	62	3R	9088905	9088923	CACCATAACGCCTATACAC		57	9088861	9088879	AGTTGATAAGATTGCAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31278	FBgn0051278	FBtr0082319	3	1	1	98	3R	6533656	6533675	CTCAGGATCATAGCAATGGA		58	6533506	6533595	AATAGTCAGTGGCAACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp12e1	FBgn0037817	FBtr0082249,FBtr0082250	2	2	2	115	3R	6260566	6260584	GATCTACCAGCTATGCAGG		59	6260743	6260836	AATTCTTATAGAGACCGCCC		58	NA	
Drosophila melanogaster	50	CG9839	FBgn0037633	FBtr0081934	2	1	1	98	3R	4630978	4630996	GGAATTGGAACAGCAAGAG		58	4630833	4630917	TAGTCATCCATATCGTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha-Est4	FBgn0015572	FBtr0081546	3	1	1	134	3R	3363829	3363847	GATGGTCTACATCCATGGA		58	3363651	3363731	CTGAGGAAACCTAAGGGTC		58	NA	
Drosophila melanogaster	50	CG1965	FBgn0037466	FBtr0081634	1	1	1	112	3R	2896837	2896855	TCTGGTTGTTACCGAACAG		59	2896929	2897004	GCTGGATTGCATAAAGATTGG		59	NA	
Drosophila melanogaster	50	CG10277	FBgn0037442	FBtr0113198,FBtr0081722,FBtr0081720,FBtr0081721	2	4	4	89	3R	2211842	2211860	AACAAGTACGACACCTGTG		59	2211913	2212068	CGTGTGATAGGGATGTGAG		59	NA	
Drosophila melanogaster	50	CG31550	FBgn0051550	FBtr0078685,FBtr0113409,FBtr0078684	2	3	3	246	3R	1314708	1314728	ACTAAAGGAGGACAACATTGG		59	1314989	1315100	ACGTGGATTGTTCAAAGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6838	FBgn0037182	FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186	2	4	4	89	3L	22709293	22709406	GTCAGTAAGGATCCAAACC		57	22709222	22709240	ATTAAGCAGATTCACGCTG		58	NA	
Drosophila melanogaster	50	CG32437	FBgn0052437	FBtr0078344	3	1	1	60	3L	21352235	21352253	TATGGAACTGCTGAGTCTG		58	21352277	21352295	CTTGTCTGTTTCCATCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rdgC	FBgn0004366	FBtr0074834,FBtr0074832,FBtr0074833,FBtr0074835	2	4	4	81	3L	20254920	20254938	GTTTCCCAACAAGTTACGG		58	20254983	20255058	GAAGACCGTTCTTATGCAG		58	NA	
Drosophila melanogaster	50	Prestin	FBgn0036770	FBtr0075153	2	1	1	80	3L	17893992	17894069	GGAATTGTAAACCTCCTAATGG		58	17893933	17893951	GAATCCATTCACCAGAGGT		58	NA	
Drosophila melanogaster	50	CG5567	FBgn0036760	FBtr0075161	1	1	1	69	3L	17835657	17836392	TAATAACCGACTGCGATGG		59	17835606	17835624	TTCATCACATCCACAGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mbf1	FBgn0026208	FBtr0075394,FBtr0075393	1	2	2	234	3L	16568068	16568296	AACAGAAGTATGGTGCTGG		59	16568863	16568881	AAGTTGTTTGGAATACCGC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	gdl	FBgn0001099	FBtr0091757	2	1	1	62	3L	15503331	15503723	GGTTAATGACCAACAATCCA		58	15503748	15503766	TTCTCGGTGACATAGAAGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17177	FBgn0036440	FBtr0075710	3	1	1	82	3L	14692404	14692787	CAATCGGGAGATAATTCACC		58	14692341	14692359	CAGTGAACTCACCTTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14118	FBgn0036323	FBtr0075870	3	1	1	199	3L	12885952	12886434	TTCATCAAGGTTCTCCCTG		58	12886596	12886615	ATCCAAAGACTCTCCATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PGRP-LA	FBgn0035975	FBtr0076434,FBtr0076432,FBtr0076435,FBtr0076433	2	4	4	148	3L	9330628	9330646	CATTACCTTTATGGGCGAC		58	9330758	9330841	TTCTGGTCACCTTAGTCTG		58	NA	
Drosophila melanogaster	50	CG8539	FBgn0035791	FBtr0076831	1	1	1	69	3L	7491071	7491089	ACGGGCTGTAATGTATCTC		58	7490937	7491038	TGTATCGTAGACCCAAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32387	FBgn0052387	FBtr0076920,FBtr0076919,FBtr0110848	1	3	3	81	3L	7160238	7160335	GGCAGATCCTTTGTTTGTG		59	7160175	7160193	GAGGTTCTCGATCATTGCA		59	NA	
Drosophila melanogaster	50	CG10274	FBgn0035690	FBtr0113149,FBtr0077018	3	2	2	92	3L	6173195	6173281	GGTTTGTGGAAAGAAGTTTCTC		59	6173124	6173142	CGGTAGGTCTCAATAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scrt	FBgn0004880	FBtr0073165	3	1	1	89	3L	3985479	3986530	ATGTTTACAACGGCTACAC		58	3986583	3986601	CACGGATCACGGTTATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14959	FBgn0035427	FBtr0073049	3	1	3	137	3L	3267287	3267442	GATCTTTCACATGTGCGAC		59	3267541	3267678	TTCAGTAATCTTACGGGTGAC		59	NA	
Drosophila melanogaster	50	CG1271	FBgn0035392	FBtr0072989,FBtr0072986,FBtr0072988,FBtr0072987	3	4	4	65	3L	3053679	3053697	GTTTGTACGATCCGTTCAC		58	3053725	3053801	TTGAATTGATGCCGAATAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9149	FBgn0035203	FBtr0072667	2	1	1	261	3L	1303909	1303928	AAGGATGAGTACATCAAGGC		59	1304212	1304286	TTTGAAGCAATGCTTCCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	E(bx)	FBgn0000541	FBtr0072522,FBtr0072523,FBtr0072521	3	3	3	88	3L	245466	245936	GAAGGAAAGGGTACGAGTC		59	245396	245417	CAGCATATCATCCTCATTATCG		58	NA	
Drosophila melanogaster	50	CG16971	FBgn0035114	FBtr0072498,FBtr0072497,FBtr0072496	3	3	3	233	3L	224178	224985	GTGAAGTCGCAAACATGTG		59	225766	225785	GTTTCTTGTTTGTGTTCCGT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	tRNA:CR30449	FBgn0050449	FBtr0086333	1	1	1	60	2R	15616796	15616814	GTCTAGTGGTTAGGCTACC		58	15616837	15616856	CCTATACAGGGAACTGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2790	FBgn0027599	FBtr0072409	1	1	1	83	2R	20835324	20835342	TTTATCCTACGCAAGGTGG		59	20835198	20835277	TAAGTTGCGAACCTCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nurf-38	FBgn0016687	FBtr0072343	3	1	1	81	2R	20447405	20447424	AAAGTCAATGATATCGCCGA		59	20447288	20447364	TCTTGTAGATCTTGAACCACTC		59	NA	
Drosophila melanogaster	50	LBR	FBgn0034657	FBtr0071713,FBtr0071711,FBtr0071712	1	3	3	88	2R	17608832	17609380	GGTATCATCGCCTATTCGT		59	17609432	17609450	TAAATGCTTTGTTCGGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Xpd	FBgn0015844	FBtr0071577,FBtr0071576	2	2	2	84	2R	17060260	17060279	TACTCGATTTCGATCCAGTG		59	17060324	17060407	CCCTTCGATACAATCATAGGA		58	NA	
Drosophila melanogaster	50	Ate1	FBgn0025720	FBtr0086319,FBtr0086318,FBtr0086317	3	3	3	106	2R	16142992	16143010	CTACATACACTCCTGTCCC		58	16142845	16142922	CACGAATAACATCGGTGAG		58	NA	
Drosophila melanogaster	50	Obp56i	FBgn0043532	FBtr0086337	2	1	1	78	2R	15755673	15755749	CATGTTTCGTACAAGCAGG		59	15755791	15755809	CGATTCGCAACATCTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14495	FBgn0034293	FBtr0086810	2	1	1	74	2R	13936871	13936890	CAAATCTGCGATACATTGGT		58	13936732	13936834	GTCGAGGTTATGGATTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9002	FBgn0050462	FBtr0100120	3	1	2	205	2R	12884668	12884686	AGAAACTGGATGTGAAGGC		59	12884218	12884499	GATCGTGTTGTAGCATCCA		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	Ef1beta	FBgn0028737	FBtr0087041	1	1	1	133	2R	12755779	12755798	TGTTAAACGCGAATTTACCC		59	12755894	12756011	CTTGCTGGGAGTATATCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4398	FBgn0034126	FBtr0087157	1	1	1	60	2R	12320221	12320239	AATCGAGTTCAGAGTTCAC		57	12320263	12320281	GTTAGTATTTCACGCACGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16935	FBgn0033883	FBtr0087622	1	1	1	98	2R	9748784	9749140	ATTCAGGGTAAATACCCGG		58	9748704	9748722	AAAGCCTTTGACTTTGTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8888	FBgn0033679	FBtr0088022	1	1	1	89	2R	7954204	7964575	TTCTATCACTTCGTCAAGGT		58	7954134	7954152	TTTCTTGGCCAAGTACCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7637	FBgn0033548	FBtr0088252	1	1	1	84	2R	6698258	6698341	TTTACACCCTGAAGAAACG		57	6698192	6698210	GAGTACTTATCCTCCGGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hig	FBgn0010114	FBtr0088608,FBtr0100119,FBtr0088606,FBtr0088607	3	4	4	153	2R	5122075	5122093	AGTACGGAAATCAGTCGAG		58	5120228	5121958	TCGTAGATACCCTTGTCCT		58	NA	
Drosophila melanogaster	50	CG8738	FBgn0033321	FBtr0088705	1	1	1	104	2R	4584623	4585168	ATCAGATAGAGGAGGGTCG		59	4585236	4585254	CATCCAGCTGGTAGTAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LvpL	FBgn0002571	FBtr0088758	3	1	1	68	2R	4343797	4343815	CATTGGTCCAAATGTGCTG		59	4343682	4343700	TTGATGAGGGTGATGTACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30375	FBgn0050375	FBtr0088799	3	1	1	102	2R	4153885	4153904	TAAATGACATAGCCTTGCTC		57	4153745	4153820	TAGTTGAAGCTGTTCTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12159	FBgn0033232	FBtr0088888,FBtr0088889	1	2	2	60	2R	3803437	3803455	GTGGGAATCACCAGTACTG		59	3803016	3803414	AAAGTCGGAGCCTATAAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30438	FBgn0050438	FBtr0086068,FBtr0086067,FBtr0086069,FBtr0086070	3	4	4	84	2R	1436213	1436231	TACTGGACCGAATATGTGC		59	1436278	1436349	AGTAGTATTGCCACCATGTC		59	NA	
Drosophila melanogaster	50	CG41484	FBgn0084044	FBtr0111243	1	1	1	60	2L	22759095	22759116	CAGACTACAAATTCCACAACTG		59	22759136	22759155	CTAAGGTTGCGATTCTTTCC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9246	FBgn0032925	FBtr0081472	2	1	1	105	2L	21164687	21164764	ATAACCAGGAAACAGCAGG		59	21164833	21164851	TTCCTGGTAAAGTGTTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	msb1l	FBgn0027949	FBtr0081258	1	1	1	276	2L	19577967	19578050	CTTTAACCTTCTTGCAGGC		59	19578290	19578308	TCCTCTAAATCCACTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10337	FBgn0032805	FBtr0081276	1	1	1	60	2L	19546119	19546203	GGTATAATCGGTTGTGCTC		57	19546077	19546095	TGAAATACAGCGGAAGACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17549	FBgn0032774	FBtr0081221	1	1	3	80	2L	19388089	19388109	TCATCGATCCGTATCTATTCC		58	19387926	19388049	CAGTTATAGCTTGTTGGTTGG		59	NA	
Drosophila melanogaster	50	Rpb11	FBgn0032634	FBtr0081011	1	1	1	81	2L	17409917	17409935	ATTATTCTCCGCAGGAAGC		59	17409792	17409872	TCTTTGAAACGCTCTTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31812	FBgn0051812	FBtr0080890	3	1	1	80	2L	16730216	16730291	CTTATCTACAAGCAAAGTCCTC		58	16730331	16730350	ATAGTGATCCGTATCACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab14	FBgn0015791	FBtr0080627,FBtr0080628,FBtr0080626	2	3	3	268	2L	14357452	14357535	AATTCATGGCCAATTGTCC		58	14357819	14357839	GTTGCCAATGAGAAAGATCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	aret	FBgn0000114	FBtr0080345,FBtr0080347,FBtr0080344,FBtr0080346	1	4	4	120	2L	12298741	12298823	ATTAAAGTGACCCTGAGCC		59	12298907	12298925	GATTGGCCTGAATTTGCTG		59	NA	
Drosophila melanogaster	50	Mt2	FBgn0028707	FBtr0110911	1	1	2	86	2L	12096646	12096713	TATGCCCAATTGGATGGAC		59	12096763	12096781	ATTACTGCCGTAATTGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)06225	FBgn0010612	FBtr0110872,FBtr0110873	3	2	3	270	2L	10976161	10976268	GATCAGGACTTGTGAACAG		57	10975909	10975927	TTGTAGCCTACAATGTGAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6724	FBgn0032298	FBtr0080191	3	1	1	129	2L	10768574	10768659	GATCCTAGGACAAACCAGG		59	10768463	10768481	TGTTCTGGTTGTCATAAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3430	FBgn0031875	FBtr0079350	1	1	1	284	2L	6958282	6958360	CCCAAAGAAGGATTATGAGAC		58	6958671	6958690	TTAGAATCGGCATTAATGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Tango1	FBgn0031842	FBtr0079296,FBtr0079295	3	2	2	84	2L	6652433	6652504	TCATTAGAAAGGGATCTGGA		57	6652551	6652569	CATTCTGACCGTTAAGGAC		57	NA	
Drosophila melanogaster	50	TpnC25D	FBgn0031692	FBtr0079063	3	1	1	133	2L	5218740	5218758	TTACATCACCACCTCAACG		59	5218852	5218935	CCATGAATTCATCAAAGTCCAC		59	NA	
Drosophila melanogaster	50	CG15443	FBgn0031609	FBtr0077450	1	1	1	61	2L	4462559	4462637	TAAGGAGCTAACTGGACCT		59	4462516	4462534	GATTACACAAGCACTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Slh	FBgn0015816	FBtr0077783,FBtr0077782	2	2	2	300	2L	2492401	2492493	AATGCCATTAAGCAGATGC		58	2492062	2492080	GAGCTAGGAAGTTCAGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34049	FBgn0054049	FBtr0100104	3	1	1	89	2L	2264695	2264776	CAGATCATTTGGCTGATCTG		58	2264625	2264643	AGAATTTGGATCTCCGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RFeSP	FBgn0021906	FBtr0077915	2	1	2	129	2L	1613144	1613162	AGTCGGTTACTTTCAAGTG		57	1612978	1613051	ATCACACGTTGATCATCAG		57	NA	
Drosophila melanogaster	50	CG5556	FBgn0031332	FBtr0077948	3	1	1	63	2L	1352725	1352743	CCGGGTATTAGCTATTGCA		59	1352624	1352698	TATAGACATGACGCGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13692	FBgn0031254	FBtr0078057	1	1	1	103	2L	422186	422261	GCAGCATAATACTAAGATCCTG		58	422325	422343	TTTGCAACTTCTGCATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spen	FBgn0016977	FBtr0078123,FBtr0078121,FBtr0078122	3	3	3	105	2L	199480	199499	AGATTATGCCAGGAAGTGTG		59	199567	199646	GTGCGTATACCAGCTACTG		59	NA	
Drosophila melanogaster	50	snoRNA:Me18S-U1356c	FBgn0082947	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	sol	FBgn0003464	FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676	2	4	4	83	X	21228148	21228166	AGAGCTACAATGTGGTGTC		59	21228210	21228300	GAACGATGATTACTTGTCTCTG		58	NA	
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074213	1	1	5	80	X	16174011	16175018	GTCTAAGAAGAATGTTCGTCAG		58	16175059	16175077	TTCAATTGGTTCTGGACCT		58	NA	
Drosophila melanogaster	50	CG33178	FBgn0053178	FBtr0073963	3	1	1	227	X	14976956	14976974	GCGATATGTTTACCCTGGA		59	14977529	14977549	GAATGTTCTCCATGTCATTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1537	FBgn0030260	FBtr0073394	3	1	1	63	X	10956384	10956402	ATTGTGCAACTTCAAGTGC		59	10956277	10956295	GTAGATGAACTCGCAAGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	His3.3B	FBgn0004828	FBtr0071345,FBtr0071347,FBtr0071346	3	3	3	219	X	9048446	9048465	AGGATTTCAAGACCGATCTG		59	9048107	9048125	ACGACAGTGATCGAATCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	3	12	15	240	X	6978842	6979199	CTTTGTTCGGTACAACAAGC		59	6978621	6978640	AATTGATCTACCTCTGTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	inx7	FBgn0027106	FBtr0071035,FBtr0071034	2	2	2	92	X	6886132	6886221	TGTGCTTCTACAGAAATGTC		57	6886059	6886078	CAATTACCGCCAATAATTCG		57	NA	
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	2	13	13	80	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567130	2567220	TGTATTGAGAGCTCATGCTC		59	NA	
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	2	13	13	80	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567130	2567220	TGTATTGAGAGCTCATGCTC		59	NA	
Drosophila melanogaster	50	pck	FBgn0013720	FBtr0070256,FBtr0070255	3	2	3	84	X	1365310	1365329	TTTAAGGACTTCGTGTACCC		59	1365376	1365453	TAACGTAATACTCGTGCGA		58	NA	
Drosophila melanogaster	50	elav	FBgn0000570	FBtr0114366,FBtr0070091,FBtr0100254	1	3	3	60	X	412385	412404	AGTAGGCTTTATTCGATTCG		57	412344	412362	GTTCAAGGCAATGATAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5815	FBgn0027574	FBtr0085106,FBtr0085107	1	2	2	127	3R	22939850	22939868	ATGTTCAGAGATCACAGGG		58	22940019	22940039	CTCAGAATCGTATTCATCCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085146,FBtr0085143,FBtr0112834,FBtr0085139	3	4	12	139	3R	22892376	22892851	TCTTTAATAGGACGGACACG		59	22892129	22892147	GTCATTCCTCAAAGGACGA		59	NA	
Drosophila melanogaster	50	CG4553	FBgn0039336	FBtr0084839	3	1	1	72	3R	21302480	21302498	TCCTGGACTAGGTTACCAG		59	21302426	21302444	GTAATCCTCGCTAGCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or94b	FBgn0039034	FBtr0084342	3	1	1	60	3R	18815060	18815080	TAATCCAACGTTGGATAGGAC		59	18815101	18815120	GTTAATACTCCATCCTCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7079	FBgn0038849	FBtr0084043	2	1	1	60	3R	16873852	16873873	TAAAGATCTACGAGCTAGTTCC		58	16873743	16873763	TTGTCTAGCCACATAATCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dys	FBgn0024242	FBtr0110915	2	1	8	88	3R	15352880	15352898	GAAACGGTTTCCAGATCCT		59	15352950	15380551	CGATTGTAGGTCCTGACTC		59	NA	
Drosophila melanogaster	50	CG31475	FBgn0051475	FBtr0083735	3	1	1	199	3R	15026238	15026257	TATCGAAGACTTTGGTGGAG		59	15026418	15026508	ATCAGTCATCTCTTTGAGGG		58	NA	
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	2	7	12	159	3R	11122418	11125004	GAAATACGATGAGGTTGCC		58	11126526	11126544	CTTCTCCTCAGAGACTTCC		58	NA	
Drosophila melanogaster	50	Zeelin1	FBgn0038294	FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034	1	4	5	120	3R	11002150	11004014	TACAGCCGAACAATTCCAG		59	11001978	11001996	GCTTGTCCCTCAAGTAGAG		59	NA	
Drosophila melanogaster	50	desat1	FBgn0086687	FBtr0082630,FBtr0082628,FBtr0082627,FBtr0082626,FBtr0082629	3	5	5	141	3R	8272219	8272237	ATTCTGAACGTAACCTGGC		59	8272402	8272421	AGACGTGATGGTAGTTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12817	FBgn0037798	FBtr0082243,FBtr0110952	3	2	3	114	3R	6049959	6049978	CTCGAAATGATTCAGTCTGC		59	6049756	6049885	CAATTGCCTCTATAAAGTGCTC		59	NA	
Drosophila melanogaster	50	Fps85D	FBgn0000723	FBtr0082053,FBtr0082051	1	2	4	105	3R	5195422	5198485	AACAGCAGATATCGCTCTC		59	5195335	5195353	TCACCATCGTTATTCAGCA		58	NA	
Drosophila melanogaster	50	CG33937	FBgn0053937	FBtr0091947,FBtr0091946	3	2	2	61	3R	5183110	5183128	TAGGCAGTGTAAAGATGGC		59	5183153	5183171	CTTAGTTACGGCAACATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11367	FBgn0037185	FBtr0078528	1	1	1	104	3L	22725145	22725163	ATTCTTCGCGTCATTTCTG		58	22725229	22725689	GGAACTGATTCCGAATATCAC		58	NA	
Drosophila melanogaster	50	CG6049	FBgn0037081	FBtr0078400,FBtr0078399,FBtr0078398	3	3	3	80	3L	21414145	21414214	ATCTATGATCGCCATCCTG		58	21414083	21414103	CATCATTTGAATGACGAGGTC		59	NA	
Drosophila melanogaster	50	BG642378	FBgn0052203	FBtr0110771	3	1	1	60	3L	19121695	19121713	GAGTCGTATATGTCAACCG		57	19121653	19121672	ATGTAAATGGTGCTCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acp76A	FBgn0015586	FBtr0075038	3	1	1	60	3L	19044509	19044527	TGGATATGCTTCGAAAGAC		57	19044467	19044485	TTCAAACGAGGACAATGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	2	8	8	121	3L	16956903	16956980	GATTCACAAGGGTCTATTGC		58	16957064	16957082	CATGGATTCCCTCCTTCAG		59	NA	
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0112852,FBtr0112851,FBtr0075438,FBtr0075439	3	4	6	98	3L	16057087	16057335	CCCACTAATAATCAAGTTCCTG		58	16057394	16057412	ATCGTTCTCAAAGCTTTGC		59	NA	
Drosophila melanogaster	50	CG32103	FBgn0052103	FBtr0075982,FBtr0075984	3	2	3	91	3L	12405212	12405292	CTCACCAGAATGGACAAGG		59	12405139	12405157	TCATGAATGTCCGTTGAGG		59	NA	
Drosophila melanogaster	50	CG6709	FBgn0036056	FBtr0076360,FBtr0113156	2	2	2	60	3L	9886557	9886628	ATGCGATACAAGAAATGGC		58	9886515	9886534	CCAAGTTATTTAGGACCTCG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	shep	FBgn0052423	FBtr0077173,FBtr0077174	1	2	4	143	3L	5160146	5161354	CAAATGTTACGGCTTCGTC		59	5157062	5160039	TCCTGTTCCTGTTGAATGG		59	NA	
Drosophila melanogaster	50	Tie	FBgn0014073	FBtr0073323	3	1	1	131	3L	4512758	4512776	CAAACATATTGCCAGCCTC		59	4512583	4512664	CTCGATGAACAATCCTCCTC		59	NA	
Drosophila melanogaster	50	CG16984	FBgn0062517	FBtr0072928	3	1	1	60	3L	2595897	2595917	GATGAGAATATTCTCGAGTGC		58	2595938	2595957	TTGATTCCTTAGGTCCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1146	FBgn0035346	FBtr0072921,FBtr0072922,FBtr0072923	1	3	3	63	3L	2491992	2492010	CTACTCCATCACCGATCTC		58	2492037	2492055	GATGTACGTGGTCTCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32299	FBgn0052299	FBtr0072898	2	1	1	82	3L	2389944	2389963	TTCAGAGGAATGGATTACCA		58	2389821	2389840	ACTTTGGCTTGATAGTAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7995	FBgn0035266	FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767	1	5	5	120	3L	1743816	1743834	GTCTGGAACTTGACAAACG		58	1743987	1744005	TGATACCGAACGTCTTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3520	FBgn0034859	FBtr0072027	3	1	1	81	2R	19284605	19284681	ATCAGGAGGCTAAGATATACGA		59	19284545	19284563	CTGAAGACATCGGCATAGG		59	NA	
Drosophila melanogaster	50	CG6393	FBgn0034685	FBtr0071752,FBtr0071751,FBtr0071750	3	3	4	82	2R	17956169	17956254	GATAATTGAATTCCCAGCAGTG		59	17956297	17956315	CGAAGGGAAGGATGTACTG		59	NA	
Drosophila melanogaster	50	Spt-I	FBgn0086532	FBtr0087731,FBtr0087729,FBtr0087730	1	3	3	88	2R	9057266	9057284	TCATCGACGAAAGCATCTC		59	9057336	9057409	ATCGACTTCATCACGATCG		59	NA	
Drosophila melanogaster	50	CG33752	FBgn0053752	FBtr0091753	2	1	1	60	2R	8433561	8433581	CTTGTCCTTACAACGTAAGTG		58	8433656	8433676	GTCAAGACAAAGTCCTTTACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MCPH1	FBgn0033664	FBtr0088055,FBtr0088056	3	2	2	82	2R	7785972	7786060	ACTCAACAGGATAAGCAGTG		59	7785909	7785927	CTCCACTACCATTGGTTCC		59	NA	
Drosophila melanogaster	50	CG13230	FBgn0040764	FBtr0088204	2	1	1	88	2R	7042471	7042489	CATCTGTCTGGTCCTTGTC		59	7042541	7042559	CGATTATCTTCTGGATGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089345,FBtr0089343	2	2	26	189	2R	6419762	6419780	TGTTGAGGATTTGACACTG		57	6393565	6419549	CGTAATACTCAGATCTTGGG		57	NA	
Drosophila melanogaster	50	sut4	FBgn0028560	FBtr0089675,FBtr0089674	3	2	2	60	2R	5973576	5973595	GCCACTATCATTTCGATCCT		59	5973535	5973555	ACACCAATAGGAGTATCTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10194	FBgn0032790	FBtr0081285	3	1	1	60	2L	19489711	19489730	AAGGCAGATAAGAAATCGCT		59	19489608	19489626	TTTCTCGTATGGCAGTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10237	FBgn0032783	FBtr0081207,FBtr0081209,FBtr0081208	1	3	3	91	2L	19437120	19437677	GTCTTCTAGAAGCGGAGAC		59	19437047	19437065	TTCCGGGTAATACTTGCAG		59	NA	
Drosophila melanogaster	50	CG33309	FBgn0053309	FBtr0080674,FBtr0100163	1	2	2	60	2L	14811306	14811327	TGAATCCCGAGATAGTTAAACC		59	14811347	14811366	GGCGATATCCTTAACTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or33b	FBgn0026391	FBtr0080279	1	1	1	60	2L	11936630	11936651	ACATAAGCTATTATATCCCGCC		59	11936671	11936690	AAATATTAGTTCCGTGGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7224	FBgn0031971	FBtr0100151	1	1	2	155	2L	7999077	7999098	GCATAACCGATAAAGGAAATCC		59	7999214	7999232	GAAAGAACGTTAGCATCGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13775	FBgn0031874	FBtr0079363	1	1	1	83	2L	6955192	6955267	TCTCATCTGTGACTATATGCAG		59	6955130	6955148	TGATGTCGCTAGTGATGTG		59	NA	
Drosophila melanogaster	50	CG3645	FBgn0031238	FBtr0078140,FBtr0078141	2	2	2	84	2L	253880	253963	AGAGATTGTGAGCACACTG		59	253814	253832	AATGGTCTTCTCAAGGTCC		58	NA	
Drosophila melanogaster	50	CG15604	FBgn0030713	FBtr0074157	3	1	1	134	X	15846073	15847920	ATCAGTCACATGCAGTCAC		59	15845957	15845976	AATATACCCTTCTCTGTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10778	FBgn0029980	FBtr0071131	1	1	1	95	X	7826646	7826664	TGGAAGAATGCCTCTACAC		58	7826327	7826587	ACTGCCACATCATGAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40091	FBgn0058091	FBtr0113789	3	1	1	236	U	141579	171207	TTCGTGTCTCACAGTTGAG		59	135608	135626	AGTTTGCAGCCATAGACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Osi5	FBgn0037413	FBtr0078595	2	1	1	76	3R	2053672	2053690	TATCCTTCTATCTGCGCAC		58	2053730	2054173	TTCTGAAACTTGGGACTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13023	FBgn0036677	FBtr0075307	1	1	1	68	3L	16918067	16918085	GATCACTTGGACATGAAGC		58	16917961	16918038	GGATTGTTGCTTCAATATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Abl	FBgn0000017	FBtr0112790,FBtr0075357	1	2	2	80	3L	16621685	16621777	GAGCATCAGTTTGAGATACG		58	16621624	16621642	TGGGTAACGAAGACTTTCC		59	NA	
Drosophila melanogaster	50	CG34415	FBgn0085444	FBtr0112692,FBtr0112691	3	2	2	72	2R	12837577	12837658	AGAATCCTTTCTCCTGTAGAG		58	12837525	12837543	TTTCCGTATATTCTCCCGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	Nipped-A	FBgn0053554	FBtr0113467,FBtr0091528	2	2	2	82	2R	1091743	1091764	GGAGCATTGGTAAATTCATCTG		59	1091628	1091701	TGGATGTTGGATATGTCGTC		59	NA	
Drosophila melanogaster	50	CG40169	FBgn0058169	FBtr0100179	1	1	2	98	2L	20238606	20238626	CGCCTTTAAGTCTTCTTTGTC		59	20238685	20245321	AACTGCTCTTCATCAGTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7631	FBgn0028945	FBtr0080754	1	1	1	76	2L	15628888	15628968	TCTGAGGAGTTTGATGCTC		58	15629006	15629026	CGAATACAAGACGAATACTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi21	FBgn0032359	FBtr0080214	2	1	1	124	2L	11284713	11284901	GAACATAACAGACGCAACAC		59	11284608	11284626	TAGTAGCGATACGGATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9662	FBgn0031529	FBtr0077594	3	1	1	84	2L	3376538	3376556	AGATTCAGCATTCCAATGC		58	3376412	3376490	ATATGATACCGCCTGTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:R2:84Fb	FBgn0011960	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR32287	FBgn0052287	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi28S-1135f	FBgn0083007	FBtr0113568	3	1	1	74	X	17039512	17039530	TGCCATACTGAGCATAACC		59	17039456	17039474	ATATCTTCAGGCACAAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14615	FBgn0031184	FBtr0077369	1	1	1	61	X	21850433	21850451	TTTCAACAAATCCTTGGGC		58	21850390	21850408	GAAAGATCCAGGCAATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DIP1	FBgn0024807	FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370	2	4	4	170	X	21497272	21497350	TTCTTTGCATTATGCGTCC		58	21497120	21497138	GAGAGTTGCACACTTTCAC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG10987	FBgn0040647	FBtr0077263	3	1	1	69	X	20930331	20930349	TTTGATGTCGCAAAGTTCG		59	20930280	20930299	GGAAATGTTATCTTCTGGGC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	r-cup	FBgn0031142	FBtr0077270	1	1	2	60	X	20895856	20895874	GAAACATGGTGAGCATCCT		59	20895814	20895832	ACCTTGATATCATTCCGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HERC2	FBgn0031107	FBtr0077299	1	1	1	200	X	20271330	20271418	GGATACAACTGTGAGTCGG		59	20271642	20271660	AAAGTGAGTCAGACGACTG		59	NA	
Drosophila melanogaster	50	CG15460	FBgn0031104	FBtr0113006	3	1	1	66	X	20261712	20261731	ATATTCCGGAAGAATTGCAG		58	20261665	20261683	GTAGACTGATTGCCCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdc42	FBgn0010341	FBtr0074751,FBtr0074752	1	2	2	63	X	19592047	19592066	GCTCATCTCGTATACAACCA		59	19592092	19592110	ATAGTTGTCGAACACCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CoRest	FBgn0053525	FBtr0091484	1	1	5	132	X	19418180	19421613	CTGATAACGATGACAAGTCCA		59	19421758	19421776	TTGATGTACATGCCCTTGG		59	NA	
Drosophila melanogaster	50	CG14193	FBgn0030994	FBtr0074670	1	1	1	60	X	19084456	19084474	AAGGATGAATCCAAGGAGG		58	19084498	19084516	AATTGTGAACTCCCATGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7358	FBgn0030974	FBtr0074652	2	1	1	226	X	18784509	18784786	AATACTGGCTCAGGTAAGC		59	18784301	18784319	GAATATCGTCATCGCTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7332	FBgn0030973	FBtr0074647	2	1	1	170	X	18779186	18779204	GTATTCAAGCGTTGGTCTC		58	18779992	18780067	TTTGTCGAGGGAAATCTCC		59	NA	
Drosophila melanogaster	50	CG12609	FBgn0030952	FBtr0074606	1	1	2	92	X	18641013	18641031	TGAACAGCAGTTAGGAGAG		58	18640886	18640904	GTCAAATGGATGGCAAGTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12609	FBgn0030952	FBtr0074606,FBtr0074605	1	2	2	60	X	18641595	18641613	TGGGAGATCTTTCAGAGAC		57	18641553	18641571	TTGGATACGGAATCACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp308a1	FBgn0030949	FBtr0074604	1	1	1	62	X	18605220	18605299	CATTCATTTAGATCCCGCA		57	18605325	18605343	TTTAGAAAGCGTTCTGGAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CCKLR-17D1	FBgn0030950	FBtr0113002	3	1	3	167	X	18619799	18619817	ATTTCATATTCGGCGAGCT		59	18619550	18619570	CATCTTCTTTATCAGCTCCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15043	FBgn0030929	FBtr0074626	3	1	1	60	X	18387765	18387783	CCAACACTTACGAATTCCC		58	18387723	18387741	TTCTCCGGATAGGTAAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wupA	FBgn0004028	FBtr0074526,FBtr0074523	2	2	7	80	X	18004586	18004604	AACGCGTATACAGTTTGGA		59	18000952	18004543	TGAGATCGTTGATCTCTTGG		59	NA	
Drosophila melanogaster	50	CG4991	FBgn0030817	FBtr0074385,FBtr0074384	1	2	2	115	X	16997640	16997660	AGAGGTCTAATAACTGCACTC		58	16997896	16997914	GAACAGATTGAGCTTGGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13004	FBgn0030797	FBtr0112996	3	1	2	114	X	16721790	16721808	GATCATCTGCGGTTATGTC		58	16721624	16721713	GTTCTGGGAGTTGATATGTG		57	NA	
Drosophila melanogaster	50	CG4829	FBgn0030796	FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337	3	5	5	93	X	16718722	16718740	CGAGAAGGGATACCATGTG		59	16718794	16718964	CAAATAGATTTGGTACTGCTCG		59	NA	
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	3	9	9	111	X	15788792	15788878	AGTTACCGAATATGGCGAG		59	15788952	15788971	TTTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	Myb	FBgn0002914	FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169	2	4	5	83	X	15749876	15749894	AGGTCTATAATCGCGTTGG		59	15749747	15749829	GTCCAAGTTGACTCTTGTG		58	NA	
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	2	7	7	82	X	15717700	15717788	GATCCATTGCTTGAGACTG		58	15717832	15717852	TCGTAGAGATCTTTAAGTCCC		58	NA	
Drosophila melanogaster	50	CG32594	FBgn0052594	FBtr0073956,FBtr0073957	3	2	2	104	X	14925094	14925221	GAATAAATCTCCGCATCGA		57	14925289	14925307	TCATGATCATGTCGATGTG		57	NA	
Drosophila melanogaster	50	CG9941	FBgn0030514	FBtr0073843	2	1	1	157	X	13613452	13613470	AGTCCAACAACGTAAGCTC		59	13613248	13613266	TACGATAATATTGGCCGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12714	FBgn0040862	FBtr0073744	2	1	1	99	X	13005731	13005749	AGAATCTGCTAATCGAGCG		59	13005430	13005670	CGGATAAATTTCTTCATCGGC		59	NA	
Drosophila melanogaster	50	CG15721	FBgn0030438	FBtr0073715	1	1	1	159	X	12867627	12867645	ATACAACGTTTGCAACGAC		59	12867766	12868493	CCAATCATTCTGCTTTCTGTC		59	NA	
Drosophila melanogaster	50	CG32654	FBgn0052654	FBtr0113445,FBtr0113444	2	2	2	60	X	12498247	12498265	ATAGCTCTGCTACAGAGCT		59	12498288	12498367	CCAAGTAGAATAAGCCTGGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	fw	FBgn0001083	FBtr0112806,FBtr0073580	3	2	2	98	X	11888948	11889035	AACCTATAAGATTGGAGCACTG		59	11888871	11888889	CTCCATTGTCCACTATCCG		59	NA	
Drosophila melanogaster	50	CG18130	FBgn0030359	FBtr0073581	1	1	1	107	X	11886523	11886541	TTTACTCGGAATGGTGTGG		59	11886375	11886452	TATCCGATTTGCAAATGGC		58	NA	Nonspecific
Drosophila melanogaster	50	CG34321	FBgn0085350	FBtr0112523	1	1	1	199	X	11625579	11625597	TCGAATCGAACGTGAAGAG		59	11625398	11625416	AAATCGCTCGGTATACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1397	FBgn0030275	FBtr0073470	2	1	1	82	X	11047111	11047129	AGGTGTACATGTGCTTCTG		59	11047047	11047065	GGTGATGAGGATCATCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sofe	FBgn0030242	FBtr0073409	3	1	1	60	X	10751148	10751166	ACATTCTACACGGATCTCC		58	10751106	10751124	TGTCGTTGAGTATACCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9817	FBgn0030219	FBtr0071509	3	1	1	83	X	10499368	10499386	GAGGAGAACAGCATAATGC		58	10499205	10499223	GTACATCAGGTCGATCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15307	FBgn0030192	FBtr0071442	1	1	1	80	X	10238023	10238041	AGGCGTAACTACGATATGC		59	10238085	10240895	CGACGATCGGTAATTAAGC		58	NA	
Drosophila melanogaster	50	Yp1	FBgn0004045	FBtr0071419	1	1	1	70	X	9948604	9948622	AGGTTAAGAACGCCAAGAC		59	9948656	9948674	ATAGGTGTTCAGCTTGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32694	FBgn0052694	FBtr0071412,FBtr0071411	3	2	4	64	X	9898737	9898755	GAACTCACCCTAGACTCTG		58	9898782	9899195	AACAGATTACTCTTGTTGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG15247	FBgn0030156	FBtr0071397	3	1	1	60	X	9769647	9769665	TGTTATACGATCACACGGG		59	9769605	9769624	TAGATCTCCTCCTTCTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34352	FBgn0085381	FBtr0112562	3	1	1	80	X	9259559	9259637	TTGCATCAATAAGGGATGGA		59	9259498	9259517	TTGGAGTTACAGAATTTGCC		58	NA	
Drosophila melanogaster	50	lz	FBgn0002576	FBtr0112814,FBtr0071320	2	2	2	221	X	9180746	9180765	GTTCACCAGGATCTATTGTG		57	9182498	9182516	GCAATTCTCATCGTTTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17446	FBgn0030121	FBtr0071327	2	1	1	116	X	9165969	9165988	TAAGTGTGGCTTCAATCTGG		59	9165811	9165829	TTATCAAGATGCTTGCGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Dsor1	FBgn0010269	FBtr0071313	3	1	1	67	X	9143683	9143701	CATCTGCCTGAAGAAACAG		58	9143732	9143821	GTATCCACGGATGACTCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	mei-P26	FBgn0026206	FBtr0071303	2	1	1	91	X	9064243	9064342	ATCGCTATACGAGACAACG		59	9064397	9064415	ATGCGATAGAGGAATGTGC		59	NA	
Drosophila melanogaster	50	Ogg1	FBgn0027864	FBtr0071223	2	1	1	117	X	8585476	8585494	CTACCTGCCACATCTAACC		59	8585574	8585652	AAAGAGAATAGCTTGAGCCC		59	NA	
Drosophila melanogaster	50	sdt	FBgn0003349	FBtr0111034,FBtr0100375,FBtr0089974,FBtr0089978,FBtr0100376,FBtr0089975	1	6	7	180	X	8131033	8131051	ATTCCTAGTCAGTCGTTCC		58	8131195	8131275	ATAAAGGATATCCCGCCTC		58	NA	
Drosophila melanogaster	50	sn	FBgn0003447	FBtr0071101,FBtr0071100,FBtr0071102	3	3	3	84	X	7879377	7879472	GGATCTGCATAAGATCGCA		59	7879520	7879538	GAATCGGTTCCATCATCCA		59	NA	
Drosophila melanogaster	50	Nek2	FBgn0029970	FBtr0071142	3	1	1	60	X	7784556	7784575	GTTCATCCAGAGCTATCGAG		59	7784515	7784534	CATAGCCTTCATTGAAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32741	FBgn0052741	FBtr0070958	3	1	1	164	X	6591533	6591552	TCTTTGTACTTCCGTTTCGT		59	6591676	6592136	GTACAACAAGAATCGATTGAGG		59	NA	InUTR
Drosophila melanogaster	50	CG15777	FBgn0029781	FBtr0070854	3	1	1	75	X	5550147	5550165	GGCAACATACAGGAGACTC		59	5550090	5550108	CAATATCCCTATCGCCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070738,FBtr0070739,FBtr0070740,FBtr0100408	1	4	4	214	X	4962802	4962820	CAGTATGCCTACAAGGAGC		59	4963094	4963112	TAATTGTGGACTGGCATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	norpA	FBgn0004625	FBtr0100671,FBtr0100670	2	2	4	90	X	4247570	4247588	TGACGATCTGTTCGAACAC		59	4247642	4247990	CCATCTAGCCAGATCTTGG		59	NA	
Drosophila melanogaster	50	Femcoat	FBgn0041252	FBtr0070663	3	1	1	61	X	4136302	4136320	AAGAAGACCACAGTGAAGC		59	4136259	4136278	TATTTAGCAGTGTCCTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10804	FBgn0029663	FBtr0070592,FBtr0114487,FBtr0070591	3	3	3	146	X	3374462	3374480	ATTATGTTCTTGCTGGCCA		59	3374262	3374280	ATAGAAGATCGGTATGCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34333	FBgn0085362	FBtr0112535	2	1	1	60	X	2171121	2171139	TCCATCTTACTCAGCTCCT		59	2171161	2171181	CGAATAAGATGAAGATGCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF2B-epsilon	FBgn0023512	FBtr0070350,FBtr0070351	2	2	2	60	X	1814876	1814895	GGATTCCATGATGGATTGTC		58	1814774	1814793	CACTAGATGATTCTCCTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	dor	FBgn0000482	FBtr0070269	3	1	1	106	X	1561638	1561717	TCGCATAGCTTATCACGAC		59	1561787	1561805	CAAAGAAGGGCAGTAGGTC		59	NA	
Drosophila melanogaster	50	CG14795	FBgn0025393	FBtr0070285	3	1	1	206	X	1406697	1406715	CCTGAAGAGAAGTACGAGG		58	1406389	1406462	CACTGTGATCAGGACATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32813	FBgn0052813	FBtr0070224,FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070223,FBtr0070219	2	6	6	73	X	1284572	1284590	GTCTAGCAACGGGATTACC		59	1284627	1284645	TAATCGAGGTCTTCGTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mod(r)	FBgn0016038	FBtr0089725,FBtr0089726	2	2	4	84	X	516383	516478	CATATCAGGGAGCTTCTTCAG		59	516524	516542	TCTTTCCGTTCAGGAAGTG		59	NA	
Drosophila melanogaster	50	CG41622	FBgn0085724	FBtr0114173	1	1	1	60	U	5530774	5530793	TTGGGTTACCTAATCCTGAG		58	5530733	5530751	AAGAAACACTCACGTTTGG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40196	FBgn0058196	FBtr0113830,FBtr0113829,FBtr0113831	1	3	3	119	U	1092306	1092324	AGATCTAAGTTGCGATCCT		57	1092152	1092224	TAAAGAGAATTCACTGCTCG		57	NA	
Drosophila melanogaster	50	CG41498	FBgn0085659	FBtr0114104	1	1	1	76	U	611579	611597	AGTCGAAACCAGAAACTCG		59	611521	611539	AATGTCGGCTAAATGTTGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18160	FBgn0039980	FBtr0113765	3	1	1	112	U	376562	376580	GTTCCATATCCACGATTGC		58	376707	376725	TTGCATGGTATTCCCTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41318	FBgn0085611	FBtr0114055	1	1	1	60	U	214276	214297	ATTTCAGAAGGTATCTGTAGGG		59	214315	214336	CGTAGTTTATCACCTCTATCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sphinx	FBgn0083990	FBtr0111046,FBtr0111044,FBtr0111045	2	3	3	60	4	996097	996118	TAGCCGAGAGTACTATTAATGC		59	996136	996157	CACTACAGGAATCTTAAAGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32017	FBgn0052017	FBtr0089206	3	1	1	80	4	1159876	1161127	TCCCTTCTAAATGAGGATTCTG		59	1159817	1159837	ATTAAGTATCGGAAGGTCTGC		59	NA	
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0089226,FBtr0089223	1	2	5	80	4	1040636	1042882	CCATGTGTTCTAACGAAACTG		59	1040576	1040595	GGTTTCTCCTCCTAAAGGTG		59	NA	
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0089226,FBtr0089223	2	2	5	81	4	1040636	1042882	CCATGTGTTCTAACGAAACTG		59	1040575	1040593	GGGTTTCTCCTCCTAAAGG		58	NA	
Drosophila melanogaster	50	CG32016	FBgn0052016	FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232	3	6	6	146	4	974515	974656	CTACTCTCAAGAATTGCATTCG		59	974390	974408	CTTGGTGATTGCGTATCCT		59	NA	
Drosophila melanogaster	50	Cec-Psi1	FBgn0000280	FBtr0085613	1	1	1	60	3R	26037283	26037302	ACTTATTGGCCACAATTGGA		59	26037386	26037404	GGGTGTATAGACCAACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ferrochelatase	FBgn0024891	FBtr0085849,FBtr0085851	3	2	3	97	3R	27636789	27636807	GTCAGACGAATCCCTACAG		59	27636651	27636730	CTTAACATAGCCCTTAATGGC		58	NA	
Drosophila melanogaster	50	5-HT7	FBgn0004573	FBtr0085746	2	1	1	60	3R	26795822	26795840	GCTCTCGTCTCTATTCCTC		58	26795780	26795800	GTAGATAATAGGGTTCAGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11315	FBgn0039801	FBtr0085721,FBtr0085722	3	2	2	129	3R	26571886	26571904	CAGACTTGCGAAGATAGTG		57	26571775	26571793	TAAAGTCGAAGCTCATCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31010	FBgn0051010	FBtr0085725	3	1	1	60	3R	26531327	26531346	AATCCAAGGAAGATCTTTGG		57	26531286	26531305	CATTCAACCTACAGTTGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hdc	FBgn0010113	FBtr0085621,FBtr0085619	1	2	3	138	3R	26105941	26105959	GAGGTCGAACTCTATTCCG		59	26134965	26183984	CCTCGTCCTCAATCTTGAC		59	NA	
Drosophila melanogaster	50	DopR2	FBgn0015129	FBtr0085468	3	1	2	211	3R	25466370	25466388	AATCCTGTGATTTACGCCT		58	25464739	25464757	TATATGTAGGTCTGCTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14508	FBgn0039651	FBtr0085406	1	1	1	60	3R	25028580	25028600	CATTTCCTACTACATCAAGCG		58	25028540	25028558	GAAGAAGATCTTGCGAGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12428	FBgn0039543	FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236	2	5	5	149	3R	23529755	23529773	ATCCGATGTACACCAAGAG		58	23529568	23529642	TAATGAACACAGCTTCCGA		58	NA	
Drosophila melanogaster	50	ALiX	FBgn0086346	FBtr0085241	3	1	1	108	3R	23522542	23522618	TCCTGGTAACTATCAGTACC		57	23522453	23522471	CTTCTGGTTGGGATATCCA		58	NA	
Drosophila melanogaster	50	CG14550	FBgn0039405	FBtr0084974	2	1	1	150	3R	21883446	21883464	CTCGTATACGTGACTTGGG		59	21883314	21883333	TCGATAGATTTATGGCAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14542	FBgn0039402	FBtr0084967	3	1	1	111	3R	21878677	21878695	GATGCTGCGTAAGAATCAG		58	21878770	21878788	CATCTTCTTGATATCCGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	And	FBgn0011273	FBtr0084904	3	1	1	60	3R	21638554	21638572	GAACTTCACTGAGTTCTGC		58	21638596	21638614	CTCCTCAGTGTCAGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4673	FBgn0039348	FBtr0084893,FBtr0084892	2	2	2	81	3R	21448138	21448156	TTCGATCAATATTCAGCCG		57	21448015	21448094	CCAACCAATCTTCTTCAGTC		58	NA	
Drosophila melanogaster	50	CG5107	FBgn0039342	FBtr0084879	3	1	1	60	3R	21331246	21331267	ACTGTATTATCAAGGAGGTGAC		59	21331288	21331306	ATAGCATCCACATAGCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11892	FBgn0039313	FBtr0089645	1	1	2	137	3R	21108534	21108619	GAAGAAATTCTACGCTGCC		58	21108720	21108738	TTCCTATAGCAGGCATCCT		59	NA	
Drosophila melanogaster	50	CG31106	FBgn0051106	FBtr0084806	1	1	1	83	3R	21044194	21044212	ATATCATCGGAGTGCTCCT		59	21044259	21044344	TCAGACTTGCACATACCAG		59	NA	
Drosophila melanogaster	50	CG6422	FBgn0039261	FBtr0113281,FBtr0084795,FBtr0084794	1	3	3	90	3R	20864033	20864153	TGAAGTCTCTGGCAATGAC		59	20863961	20863982	GTTCATATTGTTCCATGGAGTG		59	NA	
Drosophila melanogaster	50	CG18528	FBgn0039189	FBtr0084628	1	1	1	93	3R	20185004	20185022	GATTGGCCGATCTTATCCA		59	20184873	20184891	CAGTTGTCGTAGAGTCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5746	FBgn0039186	FBtr0084631,FBtr0084630	3	2	2	117	3R	20172702	20172816	TATCAGAACTACAACTCGACG		59	20172605	20172623	GTCCGGTAGCATTGTAGTC		59	NA	
Drosophila melanogaster	50	CG5746	FBgn0039186	FBtr0084631,FBtr0084630	1	2	2	115	3R	20172702	20172814	TCAGAACTACAACTCGACG		59	20172605	20172623	GTCCGGTAGCATTGTAGTC		59	NA	
Drosophila melanogaster	50	Dis3	FBgn0039183	FBtr0084605	1	1	1	81	3R	20161162	20161180	TGAAATAGCCAAGTCCCTG		59	20161225	20161299	GACAAGGGCTCCATTATCC		59	NA	
Drosophila melanogaster	50	CG6356	FBgn0039178	FBtr0084601	1	1	1	80	3R	20112887	20112967	AACTGCTACCTGATGAGTG		58	20113008	20113029	TCTGAAGAGAATCTTGTAGACG		59	NA	
Drosophila melanogaster	50	wge	FBgn0051151	FBtr0110835,FBtr0084329,FBtr0084328	1	3	3	80	3R	18539679	18539697	ATCACATTGGATGGAGAGC		59	18539554	18539635	TACCTCGAGGATCGTATCC		59	NA	
Drosophila melanogaster	50	loco	FBgn0020278	FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273	2	4	4	86	3R	18446567	18446653	AGCACCAAGATGAACTACTC		59	18446500	18446518	AGTCGAAGTTGATTTCGGT		59	NA	
Drosophila melanogaster	50	tsl	FBgn0003867	FBtr0084164,FBtr0084165	3	2	2	81	3R	17604914	17605283	CATCTATAGGAATCTGAGTGGC		59	17604854	17604872	CTCCATGTGAAAGTCTCCA		58	NA	
Drosophila melanogaster	50	CG7907	FBgn0038887	FBtr0113262,FBtr0113261	3	2	2	135	3R	17231106	17231124	CAACTTCGGGTTTAACTGC		59	17231223	17231310	GTACGAAAGTCTGAAGCAC		58	NA	
Drosophila melanogaster	50	CG7907	FBgn0038887	FBtr0113262,FBtr0113261	1	2	2	81	3R	17231539	17231557	TGTCTTCATCTGGGATCCA		59	17231600	17231709	CAACCAAATCCTTGAAGACAG		59	NA	
Drosophila melanogaster	50	CG5630	FBgn0038842	FBtr0113257,FBtr0083979	1	2	2	97	3R	16751961	16752071	CAGCGAGGATTATGATCCA		58	16752132	16752150	TTCCAGTTACTTGCTTTGC		58	NA	
Drosophila melanogaster	50	TotA	FBgn0028396	FBtr0083971	3	1	1	60	3R	16697133	16697154	CATTATAATCGATGGAGTTCCG		58	16697175	16697193	AATCTTTCCAACGATCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4000	FBgn0038820	FBtr0083935	2	1	1	121	3R	16502087	16502172	AAATGCGATTCACGTTGTG		59	16501984	16502002	TAGGGTAAATGTGAGCTCC		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	Nep4	FBgn0038818	FBtr0083936,FBtr0083937	2	2	2	140	3R	16479556	16479574	TACATAAGTGGTGGACGGA		59	16479272	16479452	CTGCGATATTCTCACCCTG		59	NA	
Drosophila melanogaster	50	CG10883	FBgn0038781	FBtr0083873	1	1	1	60	3R	16114457	16114478	CATGTTGCTTGTAAGTACTACC		59	16114418	16114437	CAGCAACGTATTATCATTGC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dys	FBgn0024242	FBtr0110919	2	1	8	153	3R	15419677	15419695	AAAGGAGCATGATGACAGG		59	15419810	15420231	CTTGAGTTCTCATTCAAGTGC		59	NA	
Drosophila melanogaster	50	CG31224	FBgn0051224	FBtr0083691	2	1	1	93	3R	14478940	14479022	GAGTGAGTCGGTTTATGGG		59	14478865	14478883	CGGATAATAGTCCTGTCGC		59	NA	
Drosophila melanogaster	50	koko	FBgn0051232	FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629	1	5	5	84	3R	14229544	14229623	TACGATGAGTTCCTCATTGC		59	14229670	14229688	TGACATCGCGTATCTTGAC		59	NA	
Drosophila melanogaster	50	gl	FBgn0004618	FBtr0083585,FBtr0083584	1	2	2	60	3R	14197167	14197470	CTGAACACAATTCTGGATTCC		59	14197127	14197146	CGCACGATATGTACATAGCT		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	PP2AB	FBgn0042693	FBtr0083556,FBtr0083555	1	2	5	262	3R	14000710	14000728	ATCTATTCTACACGCCACC		58	14001241	14001333	GACAGCAAACATATTGATCG		57	NA	DesignRelaxed
Drosophila melanogaster	50	osa	FBgn0003013	FBtr0089581,FBtr0089582,FBtr0089583	1	3	3	108	3R	13533850	13533868	TCTCAATATTCGCCGTACC		59	13533696	13533778	GATTCGGTTCGGGATACTG		59	NA	
Drosophila melanogaster	50	Edg91	FBgn0004554	FBtr0083502	1	1	1	60	3R	13437001	13437019	GGCAGTGTAGGACTTAGTG		59	13436959	13436977	CTCCGAAACCGCTATACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31267	FBgn0051267	FBtr0083404	3	1	1	60	3R	12960550	12960570	CTCAGAATATCACAATCGCTC		58	12960592	12960610	TACATGGTTAGCGTTTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5220	FBgn0038471	FBtr0083391	2	1	1	156	3R	12867363	12867383	GAGACTTAAATGGGTTGAGTG		58	12867556	12867576	CGTTGTTCATCATAGACTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083348,FBtr0083352,FBtr0083351,FBtr0083350,FBtr0083347,FBtr0083349	2	6	6	65	3R	12558920	12558938	GAGCCTACAAACAGGACTG		59	12558873	12558892	TCCAAATGTCTTTGTAGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nonA-l	FBgn0015520	FBtr0083335	2	1	1	60	3R	12466374	12466392	AAGCAGATTAACGAATCGC		58	12466416	12466434	GTTCATTGTTCTTTGCGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	npf	FBgn0027109	FBtr0083328	1	1	1	84	3R	12436763	12436834	ATGGAGGAGAATTTGCTCG		59	12436882	12436900	ATGAGTTAGTGACGTTGCC		59	NA	InUTR
Drosophila melanogaster	50	CG12753	FBgn0038427	FBtr0083315,FBtr0100643	1	2	2	80	3R	12266239	12266257	TTCAGTAATCTGGTCTGGT		57	12266116	12266198	CGATTGATGGTCTATATCTGTG		58	NA	
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333	2	6	8	138	3R	12118541	12119712	CTATTAGGATCACATGCCGA		59	12119813	12119831	GGGCGCAAATATTGAAGAG		59	NA	
Drosophila melanogaster	50	CG31291	FBgn0051291	FBtr0083243,FBtr0083244,FBtr0113402	1	3	3	81	3R	11740155	11740174	TGGATAAACTGACCAACGAG		59	11737878	11740113	GCAGATATTTCCTCTTTGTGC		59	NA	
Drosophila melanogaster	50	CG14870	FBgn0038342	FBtr0083145	3	1	1	73	3R	11307884	11307903	CTTTAGTTTGAGCATCGTGG		59	11307939	11307957	GGAAGACGAACTCCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aats-ser	FBgn0021750	FBtr0083086	2	1	1	60	3R	11166911	11166930	GGAGTTCTCTGAATTAGCCC		59	11166952	11166971	GTAGTTACCCAAGTGATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ea	FBgn0000533	FBtr0083083	2	1	1	112	3R	11155262	11155283	GGATGGCTCTAATTGAATACAC		58	11155420	11155438	CTTTCCGTTGACACAATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Oscp	FBgn0016691	FBtr0083064,FBtr0083063	2	2	2	81	3R	11092176	11092194	TCTCTGAAGATCACTTCCC		57	11092239	11092257	TCATGTCGACGTACTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12241	FBgn0038304	FBtr0083051	1	1	1	123	3R	11045718	11045736	ATGTGGATGCGTCTATCAG		59	11045884	11045902	AAAGGTCCTTCTCGATCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6966	FBgn0038286	FBtr0113236	1	1	1	91	3R	10908849	10908867	TCAAGTACCTGGTACACCA		59	10908559	10908577	GAAGTGACCCTTGTAGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	cv-c	FBgn0086901	FBtr0112632,FBtr0112630	2	2	3	153	3R	10235276	10235547	AGACAATAACTCCACATCGTC		59	10235143	10235161	AGACATATCCTTTGGTGGC		59	NA	
Drosophila melanogaster	50	CG31321	FBgn0051321	FBtr0082926	1	1	1	80	3R	10138093	10138172	CTTTCACCTGTCAGATTATCTC		58	10138211	10138231	GAACTATAGCCTCACAGTAGG		59	NA	
Drosophila melanogaster	50	CG9624	FBgn0038213	FBtr0082897	2	1	1	60	3R	10054255	10054273	CATTCATGATCACGACTGC		58	10054213	10054232	CTTAATGTCCACATCAGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12402	FBgn0038202	FBtr0082914	2	1	1	112	3R	9931792	9931873	CCATTTGCCAATACCAGAC		58	9931698	9931719	TAGTCGACTTATAGGATAGGGA		58	NA	
Drosophila melanogaster	50	Mst87F	FBgn0002862	FBtr0082884	1	1	1	75	3R	9653026	9653044	ATTGTGGATACCCTTGCTG		59	9652969	9652987	TATCGTCTTGGTGTTCTGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082802,FBtr0082803,FBtr0082807,FBtr0082801,FBtr0100261,FBtr0082805,FBtr0082804	1	7	8	139	3R	9487452	9487470	TATCATGGTGGGATCTCGA		59	9487573	9487892	CTTCGAATTCCACAAAGCC		59	NA	InUTR
Drosophila melanogaster	50	CG17025	FBgn0040554	FBtr0082792	3	1	1	177	3R	9284229	9284248	CCATTATTCAGGGACATGCT		59	9284071	9284089	ATCGTTTCTCCCATGTGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG33977	FBgn0053977	FBtr0100020	1	1	1	62	3R	9228654	9228672	CTTTGCGATTCCCTATCTC		57	9228610	9228628	TACTTGGTAGTTAGTGGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8773	FBgn0038135	FBtr0082739	1	1	1	93	3R	9122465	9122486	CCGATACGGAATACAAATTGAC		59	9122540	9122623	CAACGGTAGTTGAATTCCG		58	NA	
Drosophila melanogaster	50	CG17319	FBgn0038119	FBtr0082714	3	1	1	60	3R	8952322	8952342	CAAAGACACCTAAACGAAACC		59	8952282	8952300	TCACAGATCCCTGATAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Past1	FBgn0016693	FBtr0082655,FBtr0082654	1	2	2	74	3R	8529482	8529500	AGATGGCATCTTCAATGGG		59	8529601	8529619	TTGATGAGTTCCTGCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cpn	FBgn0010218	FBtr0082548,FBtr0082547	1	2	2	60	3R	7989966	7989985	GAAGAAACTCCTGAGACACC		59	7989925	7989946	TATCTAAAGCTGCTATGGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14740	FBgn0037988	FBtr0082552	2	1	1	91	3R	7888309	7888328	TTAATAGCGTGATTGGAGGA		58	7888167	7888186	TCCACGGTAATAAATACCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	2	15	15	121	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811941	7812031	TTCTTCAGGATGTTGGAGG		58	NA	
Drosophila melanogaster	50	CG14684	FBgn0037824	FBtr0082268	2	1	1	61	3R	6532877	6532895	TGATCAAGAGCTTGAGGAC		58	6532920	6532938	TCTTCAACTGTTGCATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31467	FBgn0051467	FBtr0082320	3	1	1	60	3R	6531486	6531506	CTTTATAGATGTATCGCACGG		58	6531446	6531464	AAGAAGCGTGTTGTAGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9393	FBgn0037710	FBtr0082113	1	1	1	84	3R	5387714	5387905	TACAACCAGCTAACGACAC		59	5387648	5387666	ATTAGTCTAGGCCCTCCTC		59	NA	
Drosophila melanogaster	50	CG9362	FBgn0037696	FBtr0082044	2	1	1	172	3R	5281645	5281663	ATAGGCAAGGATCAGAGTC		58	5281428	5281509	TCAGCTTTGTATCTCCTGG		58	NA	
Drosophila melanogaster	50	CG33936	FBgn0053936	FBtr0091943,FBtr0091942	1	2	4	145	3R	5180565	5180654	GTATGCTATAAGGACTCGCT		58	5180762	5180780	TGTAAACTGGTGACTGTGG		59	NA	
Drosophila melanogaster	50	tgo	FBgn0015014	FBtr0082005	1	1	1	60	3R	4844947	4844965	AGCAATTATCAACCCAGGA		58	4844905	4844923	GTTCCCGACTTTAGATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31100	FBgn0051100	FBtr0082011	1	1	1	138	3R	4825874	4825892	GATCGGCCATTGTTTATGC		59	4825363	4825773	TCATGCCATATCCGAATAGC		59	NA	
Drosophila melanogaster	50	CG13318	FBgn0037627	FBtr0081942	3	1	1	99	3R	4597902	4597984	AACAATGGAGGATATCCCAC		59	4597822	4597840	GACCACACTGATAGCTTCC		59	NA	
Drosophila melanogaster	50	CG8036	FBgn0037607	FBtr0081882,FBtr0081881,FBtr0081883	1	3	3	142	3R	4499021	4499107	GATCACTACCAGCAAGGAG		59	4499213	4499231	GAGATGCCGAACATATCGA		59	NA	
Drosophila melanogaster	50	Cyp313b1	FBgn0037601	FBtr0081893	3	1	1	131	3R	4470311	4470382	AAGCTTATAATGGCTTGACC		57	4470199	4470217	TAAACCCAAACAGTATGCC		57	NA	
Drosophila melanogaster	50	CG7878	FBgn0037549	FBtr0113205	3	1	1	91	3R	3949750	3949771	AAATGGAGGTCAAGAAGTACTC		59	3949885	3949903	CTCCAAGTCGGATATCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1307	FBgn0026566	FBtr0081698	1	1	1	73	3R	2482897	2482915	GGAATCTTCGGTGTCTAGC		59	2482588	2482606	TAAAGTTGTCGTTCAAGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Taf1	FBgn0010355	FBtr0081686,FBtr0081685,FBtr0081684	3	3	3	82	3R	2478391	2478480	AACATTGAAGCTCATCGCT		59	2478526	2478544	TTGTACTGCTCACAGTTGG		59	NA	
Drosophila melanogaster	50	Neurochondrin	FBgn0037447	FBtr0081729	1	1	1	60	3R	2295763	2295781	CTCTTCACCCATAAGCAGG		59	2295804	2295823	CAATGCTGAAGTAGAACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9853	FBgn0086605	FBtr0113192,FBtr0078949	2	2	2	98	3R	225237	225255	AGATACCGACAACTTCCTG		58	225097	225175	ATGGTCCGTTGAATAAGGG		59	NA	
Drosophila melanogaster	50	CG14640	FBgn0037227	FBtr0078976	3	1	1	102	3R	80839	80857	GGATTACAAGGAACGTCAC		58	80923	80941	GATCTTGATGGTCTTCCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14640	FBgn0037227	FBtr0078976	1	1	1	99	3R	80843	80862	TACAAGGAACGTCACATCAC		59	80923	80942	TGATCTTGATGGTCTTCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-1837b	FBgn0082995	FBtr0113608	3	1	1	64	3L	5757276	5757294	TGCGGATAGAAACTGTGTC		59	5757230	5757249	AAGACCGAACACTTCTATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS5	FBgn0044510	FBtr0111146,FBtr0111144,FBtr0111147,FBtr0111145	2	4	4	61	3L	24530644	24530665	GCTTGTTATCTTCACATGAACC		59	24530685	24530705	GAAGCTGGTATTACGTAAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32458	FBgn0052458	FBtr0078566	2	1	1	60	3L	23024327	23024345	GATCATACTCCACACTCGG		59	23024367	23024387	CTTCCGTTCTATCGTATTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nrm	FBgn0005629	FBtr0111148	2	1	2	110	3L	23017168	23017186	TTATCATACTGGTTGCTGC		57	23017259	23018194	CCGTGAGATATTTATCCTGG		57	NA	
Drosophila melanogaster	50	Chro	FBgn0044324	FBtr0078568,FBtr0078569	2	2	3	143	3L	22870966	22871045	TTATAAGAGCTGCACAGGA		57	22870841	22870859	GCGATTCCTTCAAATTTGC		58	NA	
Drosophila melanogaster	50	Arf79F	FBgn0010348	FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572	3	6	7	86	3L	22862823	22862842	ATTAGCTTTACAGTGTGGGA		58	22862563	22862777	GATAAGACCTTGTGTATTCTGG		58	NA	
Drosophila melanogaster	50	CG14459	FBgn0037171	FBtr0113185	2	1	1	91	3L	22576456	22588983	ACACCAGTAAAGCCAAGTC		59	22576383	22576401	GTTGTATTGGTTCTGCTGC		59	NA	
Drosophila melanogaster	50	CG14573	FBgn0037125	FBtr0078433	1	1	1	164	3L	21727441	21727459	GATGTGGATACAGATGCCT		58	21727587	21727605	CAACTTGCCCAATCTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr78Cc	FBgn0037069	FBtr0078338	3	1	1	74	3L	21293724	21293812	TTTAAGCTATCGCTCTGCC		59	21293848	21293868	GGCATCCTTGTTTATGTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12974	FBgn0037065	FBtr0078410,FBtr0078411	3	2	2	173	3L	21276389	21276407	GTCATCTATCCCTTGGCTG		59	21275743	21276255	GAACAAAGTATCCACATTGTCC		59	NA	
Drosophila melanogaster	50	siz	FBgn0026179	FBtr0111038,FBtr0078289,FBtr0078290	1	3	3	117	3L	21066243	21066322	ATCCGATACGATCTTCGTC		58	21066401	21066421	GCGCAGATTCTTGATAAAGTC		59	NA	
Drosophila melanogaster	50	fng	FBgn0011591	FBtr0078267	2	1	1	82	3L	20936716	20936734	CGACGAAGAACTATCACGA		59	20929803	20936670	GAAGAACCAGGTCTGATCG		59	NA	
Drosophila melanogaster	50	CG13252	FBgn0037016	FBtr0078245	1	1	1	214	3L	20730548	20730566	ATTTGTTTCCAGTGCAACG		59	20735860	20735880	GACCTCTATTGTAGGATACCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17233	FBgn0036958	FBtr0074852,FBtr0074851,FBtr0074850	3	3	3	66	3L	20228040	20228058	GGAAAGACCTTCTATCGCA		59	20227932	20227953	GGTAGAGTTTCTTAGTTTCGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	kto	FBgn0001324	FBtr0074884	1	1	1	169	3L	19835690	19835781	CCGAGAAGATTTGCATAAAGG		59	19835912	19835930	TTGCTGAGTATTGACCACC		59	NA	
Drosophila melanogaster	50	CG6856	FBgn0036819	FBtr0075062	3	1	1	72	3L	18861379	18861397	GAGCTGAACAGTAGTCTGG		59	18861432	18861451	AATTAAGAACCTGTGAGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6322	FBgn0036733	FBtr0075209	1	1	1	60	3L	17506387	17506406	GAAGACGTCTTAAGGAACTC		57	17506346	17506364	TACTGCCTCTTGTTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13024	FBgn0036665	FBtr0075340	1	1	1	95	3L	16803226	16803244	ATAGTCAGCATGAGTACCA		57	16803090	16803108	TAAATCCTAGCTCTTGGGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Int6	FBgn0025582	FBtr0075345	1	1	1	80	3L	16779403	16779421	GCAACTATCAGGAGTCCAC		59	16779255	16779362	GCACATTAAGGTAGTTCTTGTC		59	NA	
Drosophila melanogaster	50	CG4680	FBgn0036627	FBtr0075388	1	1	1	60	3L	16388827	16388845	TACGTTCGTCAAATGTCCA		59	16388868	16388887	GATTGTAGTAGCTCTTCGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13050	FBgn0036591	FBtr0075478	2	1	1	75	3L	16272006	16272024	GGATTGGGTCTAGGAATCG		59	16271949	16271967	GACCAAGACCTCCATAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf4	FBgn0010280	FBtr0075450,FBtr0075451	2	2	5	111	3L	16108922	16110654	AGTCCATCGTCTATGACCA		59	16110728	16110747	CATTTAGTTGCGTCAGATGC		59	NA	
Drosophila melanogaster	50	CG13075	FBgn0036563	FBtr0075443	2	1	1	141	3L	16077653	16077725	CCGAATTTCTTGGATTGGA		57	16077829	16077848	CTAGGATTGGTACTAGGCTC		58	NA	
Drosophila melanogaster	50	Dcp2	FBgn0036534	FBtr0100528,FBtr0075539,FBtr0075538	3	3	4	89	3L	15815233	15815251	GGAGGTACTGTATCCTCGA		59	15815103	15815181	GCTGACAATCTTCTCATTGC		59	NA	
Drosophila melanogaster	50	Eig71Ec	FBgn0004590	FBtr0075586	1	1	1	101	3L	15644933	15645029	TTGTCGATTGACACTCGAG		59	15644850	15644868	GTCCTCCTTGAAGTTGGAG		59	NA	
Drosophila melanogaster	50	CrebA	FBgn0004396	FBtr0075557	3	1	2	102	3L	15529544	15540982	GACTTAGATCCGGAATCCT		57	15541048	15541066	GCTTGTCGTTGAGTATGAC		58	NA	
Drosophila melanogaster	50	Brd	FBgn0000216	FBtr0075621	2	1	1	110	3L	14965975	14965993	AGCAACTGAAGAACCACTC		59	14966067	14966085	ATTACAGTTGGACGAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13476	FBgn0036441	FBtr0075687,FBtr0075686	1	2	2	70	3L	14698767	14698788	CAGAAAGCTCTAGTTGATATCG		58	14698819	14698837	GCATTATGGATTGTGTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100041	3	1	6	99	3L	14223199	14223286	AAGATTGTCTGGAACTGCT		58	14223349	14223367	ACTGCATATTCGGTCTTGG		59	NA	
Drosophila melanogaster	50	l(3)70Da	FBgn0013563	FBtr0075777	2	1	1	80	3L	14065904	14065922	CGCATAGTGAATTCAACGC		59	14065966	14066042	CTTCAGACGATCCACTGTC		59	NA	
Drosophila melanogaster	50	CG10140	FBgn0036363	FBtr0075853	1	1	1	66	3L	13433279	13433297	TGTTTCTACCATTTGTGGG		57	13433162	13433180	AGTTCTATGGCTTGTCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33263	FBgn0053263	FBtr0075859	3	1	1	60	3L	13416881	13416899	GCGGACTCTTCTACTTTCC		59	13416839	13416860	CTGAAGGAATTGATTCTGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10948	FBgn0036317	FBtr0075939,FBtr0075938	3	2	3	286	3L	12842192	12842272	CAACTCTTAATGCGGATGG		58	12841924	12841943	GTAGATGGCCCTATCTATGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32111	FBgn0052111	FBtr0075910	3	1	1	94	3L	12626967	12626986	GCAGATGTTGAATTAACCGA		58	12627043	12635162	ACTGGGATTTGTAGAACCG		59	NA	InUTR
Drosophila melanogaster	50	CG32104	FBgn0052104	FBtr0075986	2	1	1	80	3L	12390205	12390225	AGCTAAGGGTATTTCCAAAGG		59	12390080	12390164	ACCATCTGGACCTTATTGTC		59	NA	
Drosophila melanogaster	50	Pop2	FBgn0036239	FBtr0076058,FBtr0076059,FBtr0076060	3	3	3	80	3L	11993786	11993863	AAGTTTAACCTGAGCGAGG		59	11993724	11993744	GTGCTTCTTGAACTGAATTCC		59	NA	
Drosophila melanogaster	50	CG6053	FBgn0036195	FBtr0076129	1	1	1	121	3L	11690953	11691026	TTACACGAAAGTCTCCCAG		58	11690850	11690869	AATAAAGAGGTTCATCGCAC		58	NA	
Drosophila melanogaster	50	CG18815	FBgn0042138	FBtr0076105,FBtr0076104,FBtr0076103	3	3	3	81	3L	11622535	11622553	GAATGTGACGTTCAAGACG		59	11622598	11622692	ACTGATGATGTCCTTGACG		59	NA	
Drosophila melanogaster	50	CG7543	FBgn0036164	FBtr0076092	3	1	1	142	3L	11474111	11475773	GGAAGCCCTATAACTATAGCAC		59	11475876	11475894	ATTTCAGCCAGGACTAAGC		59	NA	
Drosophila melanogaster	50	wls	FBgn0036141	FBtr0076218	2	1	2	267	3L	11161301	11161322	CATGATATGGAAGGTGTTTAGG		58	11160623	11160642	CATTTGGCCCATAATGAAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34239	FBgn0085268	FBtr0112433	3	1	1	72	3L	11033584	11033602	AAGATGTCCTTGAAACGTG		57	11033530	11033548	CTAACGAGGTGGTCATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8003	FBgn0036096	FBtr0076260	3	1	1	139	3L	10655708	10655786	GATGAGGTGGATTACGGAC		59	10655889	10655907	TCTTCTTGTGCATGAACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14154	FBgn0036093	FBtr0076258	1	1	2	85	3L	10635693	10635814	GAGATGATGTTCTTAACGCG		59	10635862	10635880	AATTGGGTTAGATTGGCGT		59	NA	
Drosophila melanogaster	50	CG32055	FBgn0052055	FBtr0076304	2	1	1	60	3L	10212298	10212318	GTGGCTAAACCAGATAAACAG		58	10212258	10212276	TTGCAGTGAACTTAGTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Doc3	FBgn0035954	FBtr0076521	3	1	1	102	3L	8999303	8999322	CATACGAACCTCTGATCTCG		59	8999387	8999472	GCGGTCATTCTGATAAGCT		59	NA	
Drosophila melanogaster	50	CG13313	FBgn0035941	FBtr0076512	2	1	1	163	3L	8952903	8952923	CCTTTCTATACAATTGGTCGC		59	8953047	8953130	GTCCTTTGATAAATGCAGCA		58	NA	
Drosophila melanogaster	50	CG8111	FBgn0035825	FBtr0076770	3	1	1	61	3L	7907688	7907706	CCGCACCTACTATTACACG		59	7907645	7907663	TGTAGAAGTTTCGCGAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112702,FBtr0112698	3	6	10	81	3L	7693414	7693498	AACTGTACAAGGAAGTCATCC		59	7693353	7693373	TTAGCTTCGAATGGTTCTACC		59	NA	
Drosophila melanogaster	50	lqf	FBgn0028582	FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794	2	6	6	86	3L	7527258	7527346	GATTTCAAGGATCCAAACGG		59	7527392	7527413	AGAAATATCCAGCAGATCTAGC		59	NA	
Drosophila melanogaster	50	eco	FBgn0035766	FBtr0100278,FBtr0076882	3	2	2	60	3L	7331146	7331165	ATATAAACTGCAAGACGCTG		58	7331105	7331124	TCATACGACCTCATGTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8607	FBgn0035760	FBtr0076837	3	1	1	70	3L	7313428	7313446	CATCTACGAGGCGAATCTG		59	7313543	7313561	GAATGTCGTGCATGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32387	FBgn0052387	FBtr0076920,FBtr0110848	3	2	3	116	3L	7158112	7158130	CAAACCACGGTCATATTCG		58	7157939	7158032	TTGACTTTGCTTGTGTCTG		58	NA	
Drosophila melanogaster	50	BBS1	FBgn0035741	FBtr0076912	3	1	1	181	3L	7120268	7120286	GTTAAGATCCTGAGACGTG		57	7120431	7120531	CTTCCGTAGGTTGATTTGG		58	NA	
Drosophila melanogaster	50	SP1173	FBgn0035710	FBtr0076960,FBtr0076959,FBtr0076958	3	3	4	88	3L	6685394	6685479	AATAACCGGTCTTACAGCT		58	6685324	6685343	TAGTAATGGTCCGGTATTCC		58	NA	
Drosophila melanogaster	50	lin-28	FBgn0035626	FBtr0077090	1	1	1	106	3L	5650064	5650144	CAAGAATGTGACCCAAAGC		59	5650214	5650232	ATCCAAGGACTTCCTAGGT		59	NA	InUTR
Drosophila melanogaster	50	shep	FBgn0052423	FBtr0077172,FBtr0077175,FBtr0077173,FBtr0077174	3	4	4	81	3L	5156244	5156459	CAGGTAGATGATCAGACTTCG		59	5156183	5156203	GTTTGTATGAGGTTACTCCCA		59	NA	
Drosophila melanogaster	50	Con	FBgn0005775	FBtr0073375	3	1	1	178	3L	4953040	4953058	ATCTGCGAAACAATCTGCT		59	4940096	4952900	GAATTTGTTGTCTGACACGAG		59	NA	
Drosophila melanogaster	50	CG32235	FBgn0047330	FBtr0073355	2	1	1	217	3L	4860053	4860071	AAAGCAGGATTCAGGTTCC		59	4859854	4859875	TCTAATGCCAAGATCAATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7465	FBgn0035551	FBtr0073306	1	1	1	166	3L	4480850	4480868	TCCTTCCAACGAGTATCTG		58	4480998	4481016	TCTTGTAACGGTAACCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32264	FBgn0052264	FBtr0113431	1	1	5	139	3L	3754051	3767144	CAATAACGGAAACTGGTCAC		59	3723843	3723861	GTTGTGCATCAGTCTTGTC		59	NA	
Drosophila melanogaster	50	CG32264	FBgn0052264	FBtr0113431,FBtr0113430,FBtr0073188	2	3	5	98	3L	3718987	3722173	CAATAACTATTCGCTCAACAGG		59	3718910	3718929	CTTTCGCGTATCACAAATGG		59	NA	
Drosophila melanogaster	50	armi	FBgn0041164	FBtr0073126,FBtr0100641	3	2	2	90	3L	3463214	3463234	TAAAGACAGACTTGCCTACAG		59	3463283	3463370	CTCGTAAATTTGGAATACTGGC		59	NA	
Drosophila melanogaster	50	CG32280	FBgn0052280	FBtr0073030,FBtr0073031,FBtr0073032	3	3	3	168	3L	3168252	3168339	ATTGCCCTATTTGGTTGCT		59	3168469	3168489	GTAATCAATCTACACCACGGA		59	NA	InUTR
Drosophila melanogaster	50	CG14956	FBgn0035403	FBtr0073026	1	1	1	85	3L	3157099	3157117	TGTCAAGAACGAGGAACTG		59	3157224	3157242	GACTAGAACGCGGATTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	1	9	15	80	3L	3083795	3084812	CTCGCCACTTATATGAATCG		58	3084852	3084873	CAAATTAAGTAGTGAGAACCCG		59	NA	
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131	2	9	15	80	3L	3083796	3084813	TCGCCACTTATATGAATCGA		58	3084853	3084874	CCAAATTAAGTAGTGAGAACCC		58	NA	
Drosophila melanogaster	50	Pxn	FBgn0011828	FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951	3	4	5	114	3L	2607772	2607790	TTCGTCAAGAATGTGACCA		59	2604263	2607695	CCAAATCCACGTTGTTTCTG		59	NA	
Drosophila melanogaster	50	CG33232	FBgn0035347	FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920	3	4	4	88	3L	2495884	2495902	ACATTAGCTCCGAGTACAC		58	2495952	2496031	GGCATTATGACCATATGACTC		58	NA	
Drosophila melanogaster	50	CG32298	FBgn0052298	FBtr0072897	3	1	1	61	3L	2390839	2390860	CCTAAGAATGTAGAGAATGCAC		58	2390799	2390817	GAAGCTTCTGGTATTTGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1275	FBgn0035321	FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906	2	4	4	69	3L	2253685	2253787	GTATGGCAACTCCATTCTG		58	2253634	2253652	GTGGGTAAGCTTCAGAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32308	FBgn0052308	FBtr0113432	2	1	2	121	3L	2037607	2037625	GAGGAACACCATCGTAGAC		59	2037449	2037467	TCTTGAGAAAGCTCTCCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	JTBR	FBgn0025820	FBtr0072788	3	1	1	64	3L	1802308	1802326	TACTTAGCTACCTGGTCAG		57	1802262	1802280	GATTCTCATGTAGTTGCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdc37	FBgn0011573	FBtr0072777	3	1	1	161	3L	1796691	1796710	GAGATCGAAGGTTTCAAAGG		58	1796834	1796916	ACAGGCCTTTAGTTCATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7864	FBgn0035233	FBtr0072743	2	1	1	90	3L	1559024	1559042	AATAACCTTCAGACCCTCG		58	1559095	1559168	TCAGTTGTAACAATCTGCTG		58	NA	
Drosophila melanogaster	50	CG12091	FBgn0035228	FBtr0072831	2	1	1	160	3L	1535796	1535814	GAGGATCTAATGCTGCAGG		59	1535654	1535673	TGAATGTTATTCCTCCTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pUf68	FBgn0028577	FBtr0072710,FBtr0072707,FBtr0072709,FBtr0072708	2	4	4	157	3L	1498789	1499053	CTCATGTGCAGAGTCTACG		59	1498650	1498668	ATCTCATACTCCACGAACG		58	NA	
Drosophila melanogaster	50	stet	FBgn0020248	FBtr0072712	1	1	2	80	3L	1477283	1487774	GGACTTTGTGAATGTGATGAG		59	1477223	1477241	GAGCAGACTTCACGATCTC		59	NA	
Drosophila melanogaster	50	Aplip1	FBgn0040281	FBtr0072626	3	1	2	115	3L	1197304	1197538	AACAAGAAATGTGGCTCCA		59	1197617	1197635	TTGAGGGACAGAAATGAGC		59	NA	Nonspecific
Drosophila melanogaster	50	CkIIalpha-i3	FBgn0025676	FBtr0072604,FBtr0072603	3	2	2	81	3L	709486	709566	TGTAAGCTTGCAACAAAGC		59	709423	709441	TGGACGATTCTTAGTCAGC		59	NA	
Drosophila melanogaster	50	CG17129	FBgn0035151	FBtr0072612,FBtr0072614	2	2	3	142	3L	679822	679909	GCAAGAATTTAGCGACCTG		59	679698	679716	CTCTTCACCTTTCACCTCG		59	NA	InUTR
Drosophila melanogaster	50	CG17129	FBgn0035151	FBtr0072612,FBtr0072614,FBtr0072613	1	3	3	60	3L	679096	679114	AGGTATCAAATTCCGACGA		58	679054	679072	CTTGCTAAGGGATCACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16940	FBgn0035111	FBtr0072486,FBtr0072487,FBtr0072485	2	3	3	81	3L	215571	215591	ATACACTCACTTTACTAGCCC		58	215692	215710	ACAATATTTAAGTGCGGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Pk61C	FBgn0020386	FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466	1	8	8	86	3L	142804	142822	ATATCGCGACTGCTTAGTG		59	142872	142953	GTCGAAAGAGTTCTTTGCG		59	NA	
Drosophila melanogaster	50	5SrRNA:CR33405	FBgn0053405	FBtr0086397	1	1	1	62	2R	15634543	15634561	AATACATCGGTTCTCGTCC		59	15634499	15634517	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR33655	FBgn0053655	FBtr0091634	1	1	1	79	2R	17207402	17207420	TACGATCTAACATGCGAGG		58	17207280	17207298	GCTTTCGATTTACCATCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30428	FBgn0050428	FBtr0072451	3	1	1	99	2R	21141567	21141585	AACTGACCAAGACGATTCC		59	21141697	21141715	GCTATGCTCTAACTGACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	gol	FBgn0004919	FBtr0072460,FBtr0072459	2	2	2	74	2R	20962927	20962945	GACACCATACGGATATTGC		58	20962813	20962831	TCGATGCTCTATAAGCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3611	FBgn0035069	FBtr0072377	2	1	1	88	2R	20686776	20686794	GATCTATCTGACGAGTCGC		59	20686846	20686864	TAACCACGAACTTCTTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3589	FBgn0035065	FBtr0072375	2	1	1	109	2R	20672168	20672186	ATTGTGGTCATAGAGTCGG		58	20672259	20672334	GTCTCAATGTTCTGTCCCA		59	NA	
Drosophila melanogaster	50	CG13582	FBgn0035015	FBtr0072301	2	1	1	162	2R	20406544	20406562	TATTCCGATCTGAAGTGGG		58	20407027	20407045	TGTAATGTAGCTCCTTCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Zfrp8	FBgn0021875	FBtr0072253	2	1	1	107	2R	20021866	20021885	AATTTCACAGTCCTCAGGTC		59	20022009	20022027	TTTCTTTAGGCAGGGAACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rap2l	FBgn0025806	FBtr0100585,FBtr0072177	2	2	2	65	2R	19951016	19951035	CTTACAGTGCAATTCGTCTC		58	19951063	19951081	GTAGAAGTCCTCGATGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Phm	FBgn0019948	FBtr0072203,FBtr0072202	1	2	2	100	2R	19873907	19874867	ATTCCCAGATCGTATACGC		59	19873825	19873843	AAGGTACTTGATTGGCGAG		59	NA	
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	1	8	8	80	2R	19817553	19817571	GGATATCATGGAGAAGCCC		59	19817427	19817509	CCAATAGCCATGTAACGGA		59	NA	
Drosophila melanogaster	50	shu	FBgn0003401	FBtr0072237	2	1	1	101	2R	19729909	19729927	TGAGCTCACTGAACTACTG		58	19729751	19729770	TGTTGTAAACGATCATCAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	retn	FBgn0004795	FBtr0072072,FBtr0072073	1	2	2	95	2R	19530074	19530094	CTACACAGCATTCCAAATCTC		59	19530151	19530293	ATAGTCCTGTTCCATCAGG		58	NA	
Drosophila melanogaster	50	CG3530	FBgn0028497	FBtr0072028,FBtr0112940,FBtr0072029	1	3	3	84	2R	19279314	19279332	CTTTCGTCATTCCCAAGGA		59	19279181	19279266	AATTTGTTGATGGACACCG		58	NA	
Drosophila melanogaster	50	yellow-d2	FBgn0034856	FBtr0072012	2	1	1	60	2R	19269580	19269598	GTGTCTACCACTCTAACGC		59	19269620	19269640	GAGAGTGGAAATACATCATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dox-A3	FBgn0000487	FBtr0071957	2	1	1	191	2R	18954289	18954370	GAGGATAAGGTTGACCAGAC		59	18954524	18954542	GGTAATGATGACCTCCACG		59	NA	
Drosophila melanogaster	50	fd59A	FBgn0004896	FBtr0071898	3	1	1	74	2R	18756702	18756723	CCATACTACAAGGACAAATTCC		58	18756758	18756776	TATGAAGCAGTCGTTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mes4	FBgn0034726	FBtr0071827	3	1	1	68	2R	18299680	18299698	GATCCGGATCTGCATATGG		59	18299729	18299748	TATGAATAGTTCCACTGCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11206	FBgn0034720	FBtr0071846,FBtr0113106,FBtr0071847	2	3	4	145	2R	18222380	18222458	GAAAGGATCTCAGAGCTCC		59	18222253	18222271	TGGTTGCGTATATTCCTCC		59	NA	
Drosophila melanogaster	50	CG18870	FBgn0042180	FBtr0071688	1	1	1	123	2R	17503365	17503383	ATTGGAACTGCATAACGGT		59	17503193	17503211	CTATCATCGTAGTGCACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30286	FBgn0050286	FBtr0071696	1	1	1	138	2R	17423682	17423764	CGGTGGAGTATAAAGTTCAC		57	17423563	17423581	TTTAGGATGTGGTTTGCAG		57	NA	
Drosophila melanogaster	50	Sdc	FBgn0010415	FBtr0071706	1	1	3	128	2R	17286781	17286799	AAGATCCGGACTATTCTGG		58	17286080	17286689	TATGAGCTGTGTTTATGCC		57	NA	
Drosophila melanogaster	50	CG30387	FBgn0050387	FBtr0071597,FBtr0071595,FBtr0071596	3	3	3	80	2R	17194842	17194917	GTCTTAAAGGAGGATCAGC		57	17194961	17194979	CATTGTATTGGAAACGCTG		57	NA	
Drosophila melanogaster	50	CG9752	FBgn0034614	FBtr0071616	1	1	1	60	2R	17182200	17182218	AGTTTGGAGTACACCAGTG		59	17182158	17182178	CGTTCTCCAGAATAGTATCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30291	FBgn0050291	FBtr0071549	1	1	1	83	2R	16896815	16896833	CACAGGAAGATTAGCAACG		58	16896699	16896769	GTAGTTGATATTTGTCCGGG		58	NA	
Drosophila melanogaster	50	CG13868	FBgn0034501	FBtr0086298	2	1	1	95	2R	16199010	16200538	AGGCCATTGTATGGATCAG		59	16198933	16198951	CTGATCAGACTAATCCGGC		59	NA	InUTR
Drosophila melanogaster	50	CG9864	FBgn0034490	FBtr0086320	1	1	1	82	2R	16136023	16136041	ATTAACTGTGTTGGCACCA		59	16135894	16135977	TGATCGATTGTGTTCTCGT		59	NA	Nonspecific
Drosophila melanogaster	50	CG17821	FBgn0034383	FBtr0086642	2	1	1	132	2R	14631985	14632006	CCATGTTGATCTACAACTTCTG		59	14631806	14631824	TTATCTGGATGATCCGAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5323	FBgn0034362	FBtr0086706	1	1	1	107	2R	14502924	14502942	TACGTTCAACACGAATTGG		58	14503110	14503128	CTGATCCTCATTGGGACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18540	FBgn0034326	FBtr0086762	3	1	1	61	2R	14187065	14187083	ATTTCAAGGTCGGAATTCG		58	14187105	14187126	CTATCGTCCACATCAATATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17680	FBgn0062440	FBtr0086781	3	1	1	174	2R	14035292	14035311	ATAACCTAAGGATCCTGCAG		58	14035137	14035155	TTCTCCTCCAGAAAGTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	grh	FBgn0004586	FBtr0090012,FBtr0090008,FBtr0090007	2	3	6	147	2R	13726588	13726606	CAAACGAAAGATGACAGCC		59	13726715	13726828	GTAGAAGCTCTTCTCCATGTC		59	NA	
Drosophila melanogaster	50	grh	FBgn0004586	FBtr0090009,FBtr0090008,FBtr0090007,FBtr0090010	1	4	6	191	2R	13696982	13697000	CGGATCAGAAGAGTTTGGA		58	13697155	13708518	CATTGAGCTTTCCACTCTG		58	NA	
Drosophila melanogaster	50	CG6410	FBgn0034265	FBtr0086885	3	1	1	167	2R	13613099	13613117	AATTGAGCATCTGAAGCTG		58	13612891	13612910	TTTATTCCCAAACTGTCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dek	FBgn0026533	FBtr0100437,FBtr0100438,FBtr0100440,FBtr0100436	1	4	4	93	2R	12746185	12746203	AGATTTCTCCAGCTCTGAC		58	12746260	12746340	AGGATTGTAATCTGAGCCC		58	NA	
Drosophila melanogaster	50	CG5348	FBgn0034156	FBtr0087022	2	1	1	90	2R	12655974	12656056	CTTATCACTGGGTGTTTACCA		59	12656108	12656126	ACCTCCAGTACTGTATCGA		58	NA	
Drosophila melanogaster	50	unc-104	FBgn0034155	FBtr0113088,FBtr0113087,FBtr0087079,FBtr0113089	1	4	4	80	2R	12650303	12650322	CCATGATATGCAAGGATCTG		58	12650186	12650260	TATAGGAAACCTCAACCGA		57	NA	
Drosophila melanogaster	50	CG5065	FBgn0034145	FBtr0087108	1	1	1	80	2R	12507179	12508835	TGGATTTATGGGAAAGGTACTG		59	12508870	12508894	GGTCGTATCAGTAGATAGATATTCC		59	NA	
Drosophila melanogaster	50	Syn2	FBgn0034135	FBtr0087093,FBtr0087094,FBtr0087097	2	3	5	87	2R	12442916	12442934	ATCAGTCGCAGTTGTAGTC		59	12442985	12443124	CCATCATTAGAGGTACGGC		59	NA	
Drosophila melanogaster	50	CG15701	FBgn0034095	FBtr0087131	1	1	1	155	2R	12120369	12120476	ACAAGGAAGTTCAGTACGC		59	12120594	12120613	GATAGCTCCTCAGATCACAG		59	NA	
Drosophila melanogaster	50	Tsf3	FBgn0034094	FBtr0087130	2	1	1	109	2R	12115369	12115387	CACGCCAATATCCATACTG		58	12115459	12115546	GCAGCTTCAAAGTAATTAGC		57	NA	
Drosophila melanogaster	50	Lis-1	FBgn0015754	FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240	1	6	6	63	2R	12070571	12070592	GCTCAAATGATCAGACAATACG		59	12070615	12070701	CGTAATTCAACCTTGCAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG30094	FBgn0050094	FBtr0087233	3	1	1	78	2R	12030039	12030057	ATAACCTCTGCGACTATCC		58	12030098	12030117	AATCTCTTCTTGCAATGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rho1	FBgn0014020	FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216	2	7	7	82	2R	11993293	11993373	CACAATTCGGGATCTAGCA		59	11993419	11993437	AGGCATTAATCTTCTCGGC		59	NA	
Drosophila melanogaster	50	Ranbp11	FBgn0053139	FBtr0087278	1	1	1	60	2R	11571156	11571174	CGCTATGAACTGAAAGTGG		58	11571198	11571216	CCAATTCGGTGAGTATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30475	FBgn0050475	FBtr0087427	2	1	1	298	2R	10839406	10839424	ACCATCATAGTCACCACAG		58	10838912	10839144	CGAAACAGCCATAACTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG12859	FBgn0033961	FBtr0087440	2	1	1	127	2R	10644342	10644360	ACTACGAACACTTCAAGCC		59	10644451	10644469	AGTCCTGTACTTCTCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AttB	FBgn0041581	FBtr0087438	2	1	1	92	2R	10636857	10636875	GTTCCTTAGCCTCCAATCC		59	10636930	10636949	CCTGACCTACCACATTATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17386	FBgn0033936	FBtr0087488	2	1	1	60	2R	10310291	10310311	TTTCGCCTATATCTTCTGCTG		59	10310333	10310351	CTGCTTATACCAGACACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fl(2)d	FBgn0000662	FBtr0087648,FBtr0087647	1	2	2	101	2R	9708864	9708946	GACTATGTGAGCCAAATTGC		59	9708782	9708800	CTCGAACAGGAGATTGACC		59	NA	
Drosophila melanogaster	50	CG33156	FBgn0053156	FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681	2	5	5	83	2R	9436514	9436533	ATTATGGTGACTCCCATCTG		58	9436391	9436470	TACTGATATCTTCAGCTCCAC		58	NA	
Drosophila melanogaster	50	Aats-val	FBgn0027079	FBtr0087734,FBtr0087735	3	2	2	82	2R	9089460	9089478	ATCACGGAGGAACTTTACC		58	9089523	9089606	GATGTATTGCTGGGATAGCT		59	NA	
Drosophila melanogaster	50	CG34439	FBgn0085468	FBtr0112740	2	1	2	86	2R	9046597	9047045	TACAAGATGAACGGTCTGG		58	9047094	9047113	TGCACTTAAGCTTAAACGGA		59	NA	InUTR
Drosophila melanogaster	50	CG13323	FBgn0033788	FBtr0087797	1	1	1	60	2R	8934624	8934642	GCAATAACAACGACTACCT		57	8934582	8934600	TTGTTCTTGATCGGATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Amph	FBgn0027356	FBtr0087828	1	1	1	97	2R	8497300	8497319	GTAGTTAATAGGCACAGCGT		59	8497379	8498099	TCAGCAGTATTGGCATCAG		59	NA	
Drosophila melanogaster	50	CG8888	FBgn0033679	FBtr0088022	1	1	1	133	2R	7964562	7964580	TGCTCTTCTATCACTTCGT		57	7954095	7954113	GTTGAATCCTGCGTAAACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8889	FBgn0033675	FBtr0088026,FBtr0088025	1	2	3	128	2R	7914646	7914729	AGAAACAGATTAGTGTGCC		57	7914480	7914555	CGTGCAATTATCTAGTTTGC		57	NA	Nonspecific
Drosophila melanogaster	50	CG34228	FBgn0085257	FBtr0112421	3	1	1	69	2R	7539546	7539567	TGGATATCTGACAAATACACCC		59	7539665	7539683	CTTCTGTCAACCGTTTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lambdaTry	FBgn0043470	FBtr0088121	1	1	1	60	2R	7224701	7224719	ATTCATCCCAAGTATCGCA		58	7224743	7224761	CATCCAGGATCAGAATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dare	FBgn0015582	FBtr0088176	1	1	1	117	2R	7179486	7179560	TGCTTTGAAGACTACGGAC		59	7179387	7179405	CTTAATGGTGAAGGCAGCT		59	NA	
Drosophila melanogaster	50	CG12391	FBgn0033581	FBtr0088205	1	1	1	60	2R	7036372	7036391	TCATCTGTCCTAATGTCTCG		58	7036331	7036349	TTGGTGCATATGAATTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12943	FBgn0033572	FBtr0113065	1	1	2	111	2R	6792368	6792558	CCACAGGATGAAATTTATCCTC		58	6792629	6792648	CTACGTACTCAATTAGCGTG		58	NA	
Drosophila melanogaster	50	CG30015	FBgn0050015	FBtr0088243,FBtr0113356,FBtr0113357,FBtr0088242	1	4	4	156	2R	6730705	6730725	GATATACTGCGATCACATCAC		58	6730477	6730588	GAATGGAAGTCTCCAATGTC		58	NA	
Drosophila melanogaster	50	CG33476	FBgn0053476	FBtr0088319	3	1	1	61	2R	6298049	6298067	GGACCATTCTGTGGATCAG		59	6297918	6297938	GGGATTCCATGATAAACTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414	1	10	10	69	2R	5991854	5991872	TGTCGACAGTCGATAAGGA		59	5991904	5992230	TCATCGTAACGTTCTGACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Su(var)2-10	FBgn0003612	FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578	3	9	9	80	2R	5005943	5006018	GGTCATAGATGGCTACTTCC		59	5006058	5006079	TCCTGATGAAGTTGAATCTCAG		59	NA	
Drosophila melanogaster	50	tsu	FBgn0033378	FBtr0088567	1	1	1	60	2R	4998777	4998798	CGGAGAAATCAAGAACATTCAC		59	4998819	4998837	GTATCCCTTTGAGAACCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8083	FBgn0025709	FBtr0088560,FBtr0088562	2	2	3	149	2R	4967667	4967743	TGGATCATAAGGAGTTGGA		57	4967856	4967874	GCAGCAGTACATAAATCGA		57	NA	
Drosophila melanogaster	50	CG8252	FBgn0033344	FBtr0088682	2	1	1	60	2R	4797189	4797209	CTATTGAAGCATTATCCCGTG		58	4797149	4797167	AGTAGAGCGTGTTGTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30349	FBgn0050349	FBtr0088650	3	1	1	115	2R	4795880	4795898	CTTGGCCTACTGTCTAACC		59	4795977	4796050	CTGCGGATAAACTGTTCAC		58	NA	
Drosophila melanogaster	50	Dmn	FBgn0021825	FBtr0088641	3	1	1	130	2R	4780401	4780419	ACGGAACTATACGACATCG		58	4780579	4780597	ATCTCTGCGATGATCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dmn	FBgn0021825	FBtr0088641	1	1	1	127	2R	4780404	4780422	GAACTATACGACATCGCGA		59	4780579	4780597	ATCTCTGCGATGATCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rya-r44F	FBgn0011286	FBtr0088640,FBtr0088638,FBtr0088637,FBtr0088639	1	4	4	81	2R	4772298	4772385	GTTGTTAACGGCACTATTGG		59	4772426	4772447	AGTACTTAAGAATCAGCTCCAC		59	NA	
Drosophila melanogaster	50	sns	FBgn0024189	FBtr0111043,FBtr0088635	1	2	2	82	2R	4718009	4718027	TATCATCTGTGACTCGAGC		58	4718072	4718386	TATTAATGCCTTCGATGGGT		58	NA	
Drosophila melanogaster	50	stmA	FBgn0086784	FBtr0088715,FBtr0100111,FBtr0088716	1	3	3	112	2R	4618186	4618264	TTTATCCTCGGAATCCAGC		59	4618092	4618110	CTAACACGCGAGATTAGCA		59	NA	
Drosophila melanogaster	50	CG14767	FBgn0040777	FBtr0088720,FBtr0088719	2	2	3	151	2R	4607469	4607487	GGAGATGATGGACGAACTG		59	4607278	4607355	TATCGAAGTTCTGGTAACGC		59	NA	
Drosophila melanogaster	50	CG8726	FBgn0033244	FBtr0088873,FBtr0088874	2	2	2	80	2R	3858088	3858106	CAAGTGGCTACATATGGGA		58	3857969	3858045	ATGTAGATGACCATATGCGT		58	NA	
Drosophila melanogaster	50	CG30377	FBgn0050377	FBtr0088844	1	1	1	96	2R	3794939	3801869	CTCTGTCCTATCCATCCTC		57	3801929	3801947	AACTTCTTCTCCTTCTCCA		57	NA	Nonspecific
Drosophila melanogaster	50	pwn	FBgn0003174	FBtr0088962	1	1	1	80	2R	3186191	3186210	AAGGTGAACAACATCTACCG		59	3186253	3186330	TTCATCCAGCTTGATGGTC		59	NA	
Drosophila melanogaster	50	CG33140	FBgn0053140	FBtr0089046	1	1	1	60	2R	3068077	3068098	CACTCTATATCCAAACCTACTC		57	3068119	3068137	ATAACGGACACAATGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp42Eo	FBgn0033136	FBtr0089035	1	1	1	86	2R	2943743	2943944	CTTATTGGCTACGAGGTCG		59	2943994	2944012	TTAGTAGGTGTAGCGACGA		59	NA	
Drosophila melanogaster	50	Pld	FBgn0033075	FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997	3	6	6	81	2R	2141752	2142360	ACATTCAGGGTTACTTGGT		58	2142405	2142423	CCCTCCTTACTAGTTCCAG		58	NA	
Drosophila melanogaster	50	EcR	FBgn0000546	FBtr0086008,FBtr0086010,FBtr0086009	2	3	5	106	2R	2039493	2039583	GACTTGATGTTACCGAGGA		58	2039405	2039423	GTTGTAGCTGTGATTCTGC		58	NA	
Drosophila melanogaster	50	CG7845	FBgn0033059	FBtr0086023	2	1	1	60	2R	1962573	1962591	TTTGATCAGATGCCCACTG		59	1962468	1962489	TATTAGACATCTCTTCCTCGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30438	FBgn0050438	FBtr0086068,FBtr0086069,FBtr0086070	3	3	4	98	2R	1414858	1414876	GGACATCCTAATGGCTACG		59	1416315	1426768	AAGGTAATATTGTGACCTCTGG		59	NA	
Drosophila melanogaster	50	CG30438	FBgn0050438	FBtr0086068,FBtr0086069,FBtr0086070	1	3	4	96	2R	1414858	1414876	GGACATCCTAATGGCTACG		59	1416314	1426766	GGTAATATTGTGACCTCTGGA		58	NA	
Drosophila melanogaster	50	Atf6	FBgn0033010	FBtr0086081,FBtr0086079	1	2	3	153	2R	1036542	1036563	CAACGTATGATTAAGAACCGAG		59	1040308	1040327	GCAGAAATATCTGATCCCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	gus	FBgn0026238	FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753	1	6	6	61	2R	1005304	1008282	TTGGTGGATTAGATCCCGA		59	1005261	1005279	TTGACGAATTGTTCTTCGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17486	FBgn0032997	FBtr0111293	1	1	1	60	2R	507999	508017	GATGACCGCATTATTGCAG		59	508040	508059	AGTTCTCTTCGATGAATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:Q:34E	FBgn0028909	FBtr0080609	1	1	1	60	2L	14010614	14010635	GTTCTATGGTGTAATGGTTAGC		58	14010575	14010593	GAGATTTGAACTCGGATCG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2528	FBgn0032969	FBtr0085948	1	1	1	60	2L	21992254	21992272	GCAAGGGATTCTTCTATGG		57	21992212	21992233	GTTTCTGATCCGTCAAATATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cul-2	FBgn0032956	FBtr0085900,FBtr0085899	3	2	2	88	2L	21662617	21662694	GCCTTAATACAAGAGGTTCTC		58	21662744	21662762	TCAATTAATGACTCCACGC		57	NA	
Drosophila melanogaster	50	His2B:CG33902	FBgn0053902	FBtr0091906	1	1	1	61	2L	21452690	21452708	AAGAACATCACCAAGACCG		59	21452647	21452665	TAGATGGCATAGCTCTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	clumsy	FBgn0026255	FBtr0110895	3	1	2	102	2L	21210450	21210469	CACATTGGAGTACAATGTGG		58	21210534	21210823	ATACGGAGAATTGAAGGGC		59	NA	
Drosophila melanogaster	50	CG31627	FBgn0051627	FBtr0081474	1	1	1	60	2L	21173395	21173413	ACTTAAGCGTCAGGAACAG		59	21173437	21173455	ATAAGTGTAGGAGCCTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9246	FBgn0032925	FBtr0081472	3	1	1	60	2L	21164019	21164039	AGGAAGATACGGTAACTAAGG		58	21164060	21164079	TTGTGGTACTTCTCTTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CheB38b	FBgn0067311	FBtr0081454	3	1	1	81	2L	20816719	20816796	AAAGTGAAAGATACCGTGC		58	20816656	20816677	CCTGTAAGTTTGAGGTATTGAC		58	NA	
Drosophila melanogaster	50	szar	FBgn0032885	FBtr0089947,FBtr0089945,FBtr0089946	2	3	3	130	2L	20790493	20790511	CATTACTGCCGAATCTGAC		58	20790326	20790399	GCTTCGAGATTCTTGTTCC		58	NA	
Drosophila melanogaster	50	sNPF	FBgn0032840	FBtr0081327,FBtr0081326	2	2	2	93	2L	20055044	20055062	GAAGTCCGTAAACCAATGC		59	20055185	20055203	GGATGGATGAGGTTTCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	sNPF	FBgn0032840	FBtr0081327,FBtr0081326	3	2	2	97	2L	20055039	20055057	AAAGGGAAGTCCGTAAACC		59	20055184	20055202	GATGGATGAGGTTTCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cyt-b5-r	FBgn0000406	FBtr0080932	2	1	1	60	2L	16789520	16789539	TTCTTCATACAAATGGGCAC		58	16789407	16789425	AGTAGAGGATGTTGGTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	VhaSFD	FBgn0027779	FBtr0080941,FBtr0080940,FBtr0080942	3	3	3	144	2L	16724969	16724987	GAATACATCCAGTCGGTGG		59	16724779	16724861	TCAACTGGTATTGCACCTG		59	NA	
Drosophila melanogaster	50	cni	FBgn0000339	FBtr0080849,FBtr0080848	2	2	2	101	2L	16309918	16310008	CATATACGGCATGGTTTATTCG		59	16309838	16309858	TAGACAACTAATACACGACGC		59	NA	InUTR
Drosophila melanogaster	50	CG4891	FBgn0028520	FBtr0080815	2	1	1	60	2L	16095417	16095436	CTGGACAATATTCGGAACTC		58	16095457	16095477	TTCCGTATATGTTATCCGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0100611,FBtr0080709,FBtr0100610,FBtr0100612	2	4	7	82	2L	15258832	15258852	CAATAGCTACTCCGATTTCAG		58	15258698	15258791	GGGATAGATCACAATTCTTCTG		58	NA	
Drosophila melanogaster	50	CG3491	FBgn0028887	FBtr0080675	3	1	1	132	2L	14929652	14929726	CTAGCCAAATACCGAAAGG		57	14929822	14929840	TTCCGTTTGATACATCCGA		58	NA	
Drosophila melanogaster	50	CG4701	FBgn0028868	FBtr0080672	1	1	1	60	2L	14766268	14766288	GAGGACATTGATATCAGTTGG		58	14766310	14766328	TAAGCTCCTGAATAGTCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32970	FBgn0052970	FBtr0114461,FBtr0080622	1	2	2	79	2L	14309126	14309144	CAACACTTTATACCGCTGC		59	14309420	14309438	TTAGGCTGGCTTTCTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31769	FBgn0051769	FBtr0080602	1	1	1	60	2L	14110040	14110059	GGATAGTGATAGATGGCTGC		59	14109999	14110017	AGGCAAAGTTACGATAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	He	FBgn0028430	FBtr0080616	2	1	1	60	2L	13972472	13972493	GTACACAGATTTCTGACTTCAC		59	13972433	13972451	AATATCTTTGCTGTCGTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34003	FBgn0054003	FBtr0100058	2	1	1	79	2L	13967622	13967643	CGATGGTTATGTGAATAAGGGA		59	13967564	13967582	ACAATCCATTGGAGCAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Smg5	FBgn0019890	FBtr0080562,FBtr0080561	1	2	2	97	2L	13903705	13903788	CTTTACAGATCCCTCTACACC		59	13903628	13903646	TTCTCTTCGATTTCGTGCT		59	NA	
Drosophila melanogaster	50	Vm34Ca	FBgn0003983	FBtr0080521	1	1	1	183	2L	13411507	13411525	AAGGAGGATAAGATGCTCG		58	13411342	13411360	TGAACAGGTAGTTCTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	prd	FBgn0003145	FBtr0080299,FBtr0080298	3	2	2	64	2L	12084162	12084180	TACGATTTCTACGGCAGTC		59	12084116	12084134	TTACTACTGGCCATTGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4983	FBgn0032371	FBtr0080253	3	1	1	60	2L	11652956	11652974	TTTCAACAACGAAGCTGTC		58	11652998	11653016	AAAGAGTCCTTTGAAACCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12517	FBgn0032311	FBtr0080144	3	1	1	62	2L	10870276	10870294	ATCATCTGTATCGAACGCT		58	10870320	10870338	ATTATCCGTCCAGGATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dnz1	FBgn0027453	FBtr0080181	1	1	1	107	2L	10855448	10855663	GTTGCGAATGATTCACTCG		59	10855359	10855377	GTCTCGTCGTACAGAATCG		59	NA	
Drosophila melanogaster	50	CG13144	FBgn0032260	FBtr0080037	1	1	1	83	2L	10491188	10491206	CTTCACAAAGTCGTTGTCG		59	10491123	10491141	TCCTTGGCCCTTAAATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6206	FBgn0027611	FBtr0080031,FBtr0080030	1	2	2	80	2L	10460456	10460476	CACGGTTAATGAGTATGTGAG		58	10460518	10460596	CTTTCCAGAGTAACACCCT		58	NA	
Drosophila melanogaster	50	CG5096	FBgn0032235	FBtr0080006,FBtr0113034	2	2	2	130	2L	10383792	10383875	TTGGCGACAATGTATTTCC		58	10384031	10384050	GTCGGACAATATCAGTTCAG		58	NA	
Drosophila melanogaster	50	CG5384	FBgn0032216	FBtr0080061	1	1	1	86	2L	10312898	10312970	ATTCGAACTTACTTGGTGAG		57	10312831	10312849	ATTTATGCCCTCCTTTCCT		58	NA	
Drosophila melanogaster	50	CG31878	FBgn0051878	FBtr0079881	3	1	2	100	2L	9930314	9930612	TGAGTCTCGAGTTTACAACTC		59	9930787	9930805	CATATTGGGCAGGACTAGC		59	NA	
Drosophila melanogaster	50	scat	FBgn0011232	FBtr0079809	1	1	1	60	2L	9433071	9433091	GTTGTAGACAGCTTCAAAGTG		59	9433113	9433131	GTGTGAGGTTATAGTGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ggamma30A	FBgn0028433	FBtr0079796,FBtr0079797,FBtr0079795	1	3	3	82	2L	9272595	9291061	AATCCATAGCAGAAATGCG		58	9291107	9291125	ATTGTTCTTCTTATCCGGC		57	NA	Nonspecific
Drosophila melanogaster	50	CG32985	FBgn0052985	FBtr0079757	2	1	1	90	2L	8963274	8963358	ATGGGCTACAATAAGGTCG		59	8963412	8963430	AAATTTGAGTCTCTGCCGA		59	NA	
Drosophila melanogaster	50	Tsp29Fb	FBgn0032075	FBtr0079755,FBtr0079756	3	2	2	139	2L	8939019	8939127	CAATCTATGCTAGAGTGTTGC		58	8939228	8939246	TTCAGACTTGTTGGTTGGT		59	NA	
Drosophila melanogaster	50	CG32987	FBgn0052987	FBtr0079735	2	1	1	60	2L	8864067	8864087	GATATGCATGCATTGTATCCC		59	8864108	8864127	TGTCATGAACCACTTACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9296	FBgn0032059	FBtr0079750	1	1	1	60	2L	8685391	8685409	CCAGTTTCTACGACAACGA		59	8685349	8685367	TAAATGTAGTACAGGCGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6441	FBgn0031920	FBtr0079450	1	1	2	89	2L	7475864	7475945	CTTTACAGATACGAAGACTCTC		57	7475995	7476013	CTCATCTACCTCCATAGCT		57	NA	
Drosophila melanogaster	50	smt3	FBgn0026170	FBtr0079356	2	1	1	242	2L	6967247	6967265	CATCAACCTGAAGGTCCTC		59	6967023	6967041	TAATCTTATGGAGCGCCAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG17378	FBgn0031858	FBtr0079336	1	1	2	100	2L	6775886	6775974	TACCCAAGTTTGACGAGAG		58	6776036	6776056	ATATCGTCCTGAGATGATCTC		58	NA	
Drosophila melanogaster	50	CG9044	FBgn0031752	FBtr0079149	2	1	1	108	2L	5951986	5952064	GTTAACTGAAAGGACGAAAGC		59	5952134	5952152	TTTATCCTTGCGCATTGTG		59	NA	
Drosophila melanogaster	50	CG8892	FBgn0031664	FBtr0079045,FBtr0079046	2	2	2	60	2L	4980268	4980287	CTTTATTCAGGAGGATGCAC		58	4980227	4980245	GTCATCATCGATGTACGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3036	FBgn0031645	FBtr0077391	2	1	1	115	2L	4902799	4902817	ATATTGCACCGAACTTTGG		58	4902894	4902982	GAAGGATTGATCCTTGTAGGT		59	NA	
Drosophila melanogaster	50	CG17612	FBgn0031597	FBtr0077464,FBtr0077463	3	2	2	60	2L	4382273	4382291	GCAAATAACGACGTGATCC		59	4382231	4382251	GATCCTCAAGAATTACCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33282	FBgn0053282	FBtr0113458	1	1	1	151	2L	3328161	3328179	CTTTGAAGTGAATCTCGCC		58	3328294	3328369	TCCAGATACACGCATATGG		58	NA	
Drosophila melanogaster	50	CG34393	FBgn0085422	FBtr0112637	1	1	1	88	2L	3189484	3189986	ATAAGCAGAAGAAGTGGGAC		59	3189415	3189433	ATAGGTTTCCAGGTTGCAC		59	NA	
Drosophila melanogaster	50	CG9894	FBgn0031453	FBtr0077713	2	1	2	103	2L	2753623	2753641	CAAAGGAATCCGTGAAAGG		58	2756055	2756073	TTCCTCATCGGAATCTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	ia2	FBgn0031294	FBtr0089789,FBtr0089790	1	2	2	80	2L	1014711	1014792	GTATCACATCTATGAGGTTCAC		58	1014652	1014671	TTCTTCAGGTAGAAAGAACG		57	NA	
Drosophila melanogaster	50	CG31973	FBgn0051973	FBtr0113416,FBtr0078163,FBtr0078164	3	3	4	93	2L	38598	38618	CGATGGTATTATTCACCAAGC		59	35203	38543	CGACTCAACTCTATAGGCG		59	NA	
Drosophila melanogaster	50	CR32660	FBgn0052660	FBtr0073592	1	1	1	93	X	11814507	11814525	TTCAGTTTGCTTTCAGAGC		58	11814360	11814451	CGCATGAAACTCAATTACAC		57	NA	Nonspecific
Drosophila melanogaster	50	CG41105	FBgn0069939	FBtr0111201	1	1	2	100	X	22268776	22269590	ATGGACTATTCCTGGAGTG		58	22269654	22269672	AAAGTCGTAGATGGACAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32511	FBgn0052511	FBtr0077258	1	1	1	81	X	21027661	21028075	AACGATTAACGCTCCTCTG		59	21027598	21027616	GTAGTAGGCTCCATTGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	stg1	FBgn0064123	FBtr0091649	2	1	1	60	X	20977749	20979135	AATACCCTATACGGTCACCA		59	20979157	20979176	CACTAGAAATACACCAGCAG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15452	FBgn0031130	FBtr0077292	2	1	1	136	X	20616430	20616708	GATTCGCAACGCATTAAGG		59	20616312	20616330	CTTAGTGGATTGTGCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9571	FBgn0031086	FBtr0070032	1	1	1	60	X	19985701	19985722	CCTCATTCTCATTTCATTCAGC		59	19985662	19985681	TATGATGATATGGCTCCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18809	FBgn0042132	FBtr0074811	2	1	2	284	X	19637732	19638305	TAACAACAAAGGCGAATCC		58	19636915	19637485	GTAGTGATGATTTGTTTGCG		57	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	gfA	FBgn0086778	FBtr0074681,FBtr0074679,FBtr0074680	3	3	3	81	X	19236629	19236776	TACTGATGTACAACAGTGCC		59	19236567	19236585	AGACAGCTCCCATTATTGC		59	NA	
Drosophila melanogaster	50	CG32536	FBgn0052536	FBtr0074686	3	1	1	97	X	19169554	19170520	ACTTCTTCAGTGAGCTGAC		59	19169475	19169493	AAAGTCACTTTGTTGGCTG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7453	FBgn0030991	FBtr0074667,FBtr0074666	1	2	2	63	X	19074922	19074940	CTGATATACACCAGGAGGG		58	19074967	19074985	GTACCTGGCTTATCCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12609	FBgn0030952	FBtr0074605	2	1	2	60	X	18641984	18642002	GTATCAGATGACTTCCGGC		59	18641942	18641962	AAATCGATCAACGTAGTAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	e(y)1	FBgn0000617	FBtr0074463	3	1	1	90	X	17736365	17736383	TCATGTCCATCCTGAAGGA		59	17736437	17736519	CAGGTTACATAGCGGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	f	FBgn0000630	FBtr0110991,FBtr0074423,FBtr0074420,FBtr0074422	3	4	6	116	X	17166633	17166651	ATACAACGTAGGACGATCC		58	17166731	17166935	TTGTTCAAATGGTGGTTGC		59	NA	
Drosophila melanogaster	50	CG8260	FBgn0030684	FBtr0074089	1	1	2	123	X	15651251	15651353	TATCTATACGACGTTCGAGC		58	15651439	15651457	ATGTCACTAAATTCGGGCA		59	NA	
Drosophila melanogaster	50	Lsd-2	FBgn0030608	FBtr0073967	1	1	3	260	X	14968210	14968228	CAGGAGATCTACAACCAGG		58	14967423	14967989	ATCATTATCTTCCTCGACATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1673	FBgn0030482	FBtr0073777	3	1	1	249	X	13293732	13293751	TACTTTAAGACAGGCTCGTC		59	13293962	13294048	GTTCTTGTTCTCCTTGATCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	mew	FBgn0004456	FBtr0073731,FBtr0073732	2	2	2	83	X	13109887	13109963	AATAACATAGAGGTGGAGACG		59	13109824	13109842	GATGATAATCAGCCACGGT		59	NA	
Drosophila melanogaster	50	CG15728	FBgn0030409	FBtr0073674	2	1	1	125	X	12521534	12521555	CGGTTTGATGGTTTATCTACTC		58	12521641	12521723	CATACCTGGTGGATATGGC		59	NA	
Drosophila melanogaster	50	CG32662	FBgn0052662	FBtr0073564	1	1	1	60	X	11726179	11726197	CGGTATACATTACCCTGGA		57	11726219	11726239	GAGTTATTCGATGTAGAGGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32663	FBgn0052663	FBtr0073563	1	1	1	80	X	11720806	11720901	AATCTGGATCGTACAGCAG		59	11720943	11720963	CATAATCCGAATCCAAGTGAC		58	NA	
Drosophila melanogaster	50	CG4040	FBgn0030076	FBtr0071283	1	1	1	81	X	8946414	8946494	ACATTCATATCACCCGTGAC		59	8946537	8946556	GACTTGTCGTTGTTCTTCAG		59	NA	
Drosophila melanogaster	50	CG3032	FBgn0029928	FBtr0071032	2	1	1	60	X	6907576	6907594	AATCCGTACGAGAACTCTG		58	6907534	6907553	GTCTTCAAGGGTTCCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14440	FBgn0029894	FBtr0070987	3	1	1	184	X	6592113	6592131	ACAACTATACCAGTTCGGC		59	6591947	6591965	GAAATTGTTCTCGAGGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3226	FBgn0029882	FBtr0070993	1	1	1	87	X	6548000	6548018	ACGGGAGATTGTCAATCTG		59	6547754	6547949	GTGCAGATATCTCTTGGCT		59	NA	
Drosophila melanogaster	50	CG34417	FBgn0085446	FBtr0112703,FBtr0112706,FBtr0112707,FBtr0112704	1	4	5	80	X	6446296	6446314	TATCGTACCGAAACTCTGG		58	6446703	6446721	GTTGCGACCTTTAAACTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11462	FBgn0029815	FBtr0070831	2	1	1	140	X	5734697	5734715	GTTGCTCTCAGAAGTACCT		58	5734575	5734593	TTAAACGAATCGAAAGGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15769	FBgn0029805	FBtr0070835	1	1	1	206	X	5668216	5668234	AACATCCATTGGATTCCGT		59	5667964	5668046	CATTGGAGACCCTGATGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG4151	FBgn0029770	FBtr0070779	1	1	1	60	X	5396442	5396463	TCATCAAGGACTAAGAGTTCTG		59	5396484	5396502	AGGATTCAAGTTGGGATCC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	z	FBgn0004050	FBtr0100380,FBtr0070435	3	2	2	120	X	2343335	2343354	ATTGATTAAGCACCCAGAGG		59	2343497	2343517	GATCTCACTAATGATCTGCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG4406	FBgn0023545	FBtr0070347	1	1	1	127	X	1902491	1902561	GAGGATTCCTTATCGCACC		59	1902321	1902400	AGAAATTCGCCTATGGTCC		59	NA	
Drosophila melanogaster	50	CG14815	FBgn0023516	FBtr0070367	1	1	2	78	X	1762864	1762882	ATTATTAGAGCGCTGTGCA		59	1762732	1762822	TGGAGATGCTACGTAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14626	FBgn0040360	FBtr0070200	3	1	1	146	X	1081152	1081894	CTCTATGTTGGTCCCACAG		59	1082002	1082022	ACTGGTTACATATGGAATGGG		59	NA	
Drosophila melanogaster	50	CG32017	FBgn0052017	FBtr0089206	2	1	1	80	4	1164123	1164142	ACATATAGGGATCCCTTCAC		57	1161981	1164080	GCTCATTCGTAATGATCCC		58	NA	
Drosophila melanogaster	50	Crk	FBgn0024811	FBtr0089112	3	1	3	111	4	231097	231187	TTTCTGATAGGAACAGCTGG		59	231260	231279	ATCGAGTTACTATCACGGAC		58	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-1377a	FBgn0086665	FBtr0091751	1	1	1	60	3R	26033523	26033542	TAATGGCAGCTTATCACTCC		59	26033482	26033501	GAAAGTAATGCAGTAACCGT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acf1	FBgn0027620	FBtr0085845	3	1	1	84	3R	27624346	27624423	AAGACGAGTCAGATGAGGA		59	27624471	27624489	AAGAATAGCCTGCATTGCA		59	NA	
Drosophila melanogaster	50	Cpr100A	FBgn0039805	FBtr0085710	1	1	1	164	3R	26693872	26693953	AATGGTTTCCAAGCTTCTG		58	26694081	26694099	ATCTCCGTAGTCATTGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31013	FBgn0051013	FBtr0085671	2	1	1	86	3R	26470934	26471014	CAGTACAATGACAGCATGAG		58	26470867	26470885	TTGAATAGCATCCGATGGT		58	NA	
Drosophila melanogaster	50	CG7816	FBgn0039714	FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921	2	6	6	80	3R	25690545	25690625	AGGGCGATAATCAAGATCC		58	25690483	25690501	TCGTGAAGATCAGTATGCC		59	NA	
Drosophila melanogaster	50	CG1443	FBgn0039620	FBtr0085345	1	1	1	294	3R	24819799	24819817	AATGCTCTGTTAGCCAGTG		59	24819398	24819477	AGATCTTCATCATTCTGGGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5514	FBgn0039560	FBtr0085252,FBtr0085253	2	2	2	110	3R	23765357	23765436	ATTACCTTCGAAGGTACTGAG		58	23765508	23765526	TATGTTTGCCTTCACCTCC		59	NA	
Drosophila melanogaster	50	mRpS22	FBgn0039555	FBtr0085247	3	1	1	62	3R	23743320	23743338	GTTCATCCTGGATCGACTC		59	23743364	23743382	GAAATGTTGTGGAACTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dsd	FBgn0039528	FBtr0085201	1	1	1	81	3R	23425391	23425409	CGATTGTTCGTCGAAATGG		59	23425267	23425285	CAATACTTTCGCGGTTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mrt	FBgn0039507	FBtr0085174	3	1	1	136	3R	23104813	23104908	TTGATATAGGCTATGAGACGAC		58	23104698	23104716	CACTATAAACGGCAAGTGG		58	NA	
Drosophila melanogaster	50	Tsp97E	FBgn0039465	FBtr0085082	1	1	2	103	3R	22788171	22788895	CTTCAGCTTCACTGAGGTC		59	22788086	22788104	AATAATCGTGCGGAAAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14250	FBgn0039448	FBtr0085049	3	1	1	223	3R	22519058	22519231	GTTACTCTTACTCATTGCTTCC		58	22518856	22518874	AGAACTCCTTGCTGAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	E(spl)	FBgn0000591	FBtr0084961	3	1	1	90	3R	21866373	21866391	AAATCGGTGATGACTCACC		59	21866445	21866463	TCGAGTTCTGGATGAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5079	FBgn0039346	FBtr0084883	3	1	1	76	3R	21439880	21439898	CATCTCATCAGGAAGTGCA		59	21439937	21439956	ATTTGCTGTCTGAAGTTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4582	FBgn0039344	FBtr0084896	2	1	1	65	3R	21408234	21408252	GGTGAATCTCTACGATGCC		59	21407988	21408205	ATTCTGGTGGGATTGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	bam	FBgn0000158	FBtr0084869	1	1	1	88	3R	21069704	21069783	GGACAAGTTCCATACTCAG		57	21069634	21069652	TAAATACGTGCACACTGAG		57	NA	
Drosophila melanogaster	50	mld	FBgn0083077	FBtr0111013,FBtr0111012	1	2	2	291	3R	20445546	20445564	GTATAAGCCAAGGCTACAG		57	20445819	20445902	CATTTCCACTGTTGATGGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG6643	FBgn0039208	FBtr0084647,FBtr0084648	3	2	2	91	3R	20378366	20378626	CTATTGGTGTGAGGCTACTG		59	20378680	20378698	GGTTCTCGTCTTTCTTGGA		59	NA	
Drosophila melanogaster	50	BRWD3	FBgn0011785	FBtr0084604	3	1	1	87	3R	20146558	20146576	TCCTTAAGGGACTACTGCA		59	20146627	20146706	GAACGCGATCTAAGTTGTG		58	NA	
Drosophila melanogaster	50	CG6364	FBgn0039179	FBtr0084602	1	1	1	82	3R	20116541	20116560	AGATACGAGAACTGTTCCAC		59	20116605	20116680	GATATCACGTGGCACTCTC		59	NA	
Drosophila melanogaster	50	CG4624	FBgn0039058	FBtr0084401	2	1	1	72	3R	18984327	18984346	AATCTATTGTCCTTCGAGGC		59	18984207	18984295	GTATGATATCACTGCCAATAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7054	FBgn0038972	FBtr0084254	1	1	1	90	3R	18291391	18291470	CCAATACTACTCGCACAGG		59	18291524	18291542	TAATAATTGGCGGCAATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5621	FBgn0038840	FBtr0110956,FBtr0083978	1	2	2	171	3R	16729758	16729776	CAAGCTGGAAGTCATTGAG		58	16729911	16730012	ATAGGGTTCACTAATGGCC		58	NA	
Drosophila melanogaster	50	H	FBgn0001169	FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917	1	4	4	146	3R	16450480	16450500	GCATCATTCAGAAACTCATCG		59	16450608	16450776	AGGGTGGAGAAACTTTGTG		59	NA	
Drosophila melanogaster	50	Srp72	FBgn0038810	FBtr0083911	1	1	1	60	3R	16416441	16416460	AAGATGTCATTAAGGGCTCC		59	16416483	16416559	GACATGTCGTATTGATCGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5023	FBgn0038774	FBtr0083866	2	1	1	105	3R	15999894	15999912	GAGGACATTCTCAAGGACG		59	15999981	15999999	CCATCAGTTGGAAGTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4424	FBgn0038765	FBtr0083841	1	1	1	86	3R	15852659	15852790	CTAGTTAAGCATGAAAGAACCC		59	15852594	15852612	AAGGACACTGGCATATGTG		59	NA	
Drosophila melanogaster	50	cry	FBgn0025680	FBtr0083736	3	1	1	98	3R	15040615	15040869	AAGGAATTTGTTCACGAGC		58	15040931	15040949	CAAATCAATGATCCGCTCC		58	NA	
Drosophila melanogaster	50	CG6026	FBgn0038676	FBtr0083715	1	1	1	141	3R	14867679	14867698	CAACCATTAAGTCTACAGCA		57	14867802	14867884	TCAATGGTTGTTTCTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7720	FBgn0038652	FBtr0083678,FBtr0083679	2	2	2	111	3R	14594466	14594484	TCATCTACGGCATGATGAG		58	14587720	14594391	CTCTTGAACCTGAGATCGA		58	NA	
Drosophila melanogaster	50	Sur-8	FBgn0038504	FBtr0083447,FBtr0083448	2	2	2	148	3R	13224765	13224783	GACCAGGATGTCATCAAGG		59	13224397	13224416	CCGATCTTATTGCTGTACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	mRpS11	FBgn0038474	FBtr0089893,FBtr0089894	2	2	3	106	3R	12898895	12898967	GGATCACAAAGGAGTCCTC		59	12899037	12899055	TAATGGTAACCGCTGTAGC		59	NA	
Drosophila melanogaster	50	CG6118	FBgn0038339	FBtr0113240,FBtr0113239	3	2	2	94	3R	11249455	11249475	CAGGTGAATGTCAAGTATGAG		58	11249255	11249399	CTGTCCAGGTTCTTCTCTG		59	NA	
Drosophila melanogaster	50	CG31304	FBgn0051304	FBtr0083040	2	1	1	107	3R	10926048	10926066	TATTCATGCTCGGAGATCG		59	10925902	10925977	ACACATTACCTGTCAGCAG		59	NA	
Drosophila melanogaster	50	Kif19A	FBgn0038205	FBtr0082912,FBtr0082911	3	2	2	80	3R	9939301	9939320	CGGCAGCATATGATTATCTC		58	9939178	9939258	TGATTCAATGTCGTCATCG		57	NA	
Drosophila melanogaster	50	CG31337	FBgn0051337	FBtr0082790	2	1	1	92	3R	9370330	9370348	TATGCGATGTACAAGGAGC		59	9370088	9370274	GCACAAATGATAGCCTTCG		59	NA	
Drosophila melanogaster	50	CG14394	FBgn0038079	FBtr0113226	2	1	6	245	3R	8521124	8521858	ATGAGATGAAGGCAATGGA		58	8522831	8522850	TTCGATCCTTGGTATTATGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6764	FBgn0037899	FBtr0082403	2	1	1	225	3R	7257046	7257134	CAAGGTCTTCAAGTTCTGC		58	7256839	7256857	CTCCTTAATCTCCGTCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6723	FBgn0037895	FBtr0082405	2	1	1	101	3R	7243952	7243970	ACCTAAACATCACCTCCAC		58	7243697	7243832	GATAGGCCACATTCATAATGG		58	NA	
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0100455,FBtr0082254,FBtr0082255,FBtr0100454,FBtr0082253,FBtr0082256	2	6	6	91	3R	6417178	6419287	GAAGTCGACTCACTGATGG		59	6411625	6411645	CAGAAGTTATCGCATAACTCG		58	NA	
Drosophila melanogaster	50	Teh1	FBgn0037766	FBtr0082151	2	1	1	129	3R	5690793	5690811	TGATAACGGTCATCTCGTC		58	5654509	5690703	GAAGTATCACTGAGATTCTCGA		59	NA	
Drosophila melanogaster	50	CG12947	FBgn0037753	FBtr0113213,FBtr0113212	1	2	2	61	3R	5607535	5607553	AAGTTTAGTCCCAAGGACG		59	5607578	5607596	GGTTTCCTAGTGGTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11977	FBgn0037650	FBtr0081961	1	1	1	124	3R	4823478	4823618	ATACTCCACCCGATTACTG		58	4823769	4823787	ATAATCGCTCATCCTGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9636	FBgn0037556	FBtr0081806,FBtr0081805,FBtr0081804	1	3	3	80	3R	4068558	4068647	TAGCCGAGATCAAACACTG		59	4068496	4068514	TCTCTTGACGATGCAAGAG		59	NA	
Drosophila melanogaster	50	CG11052	FBgn0040524	FBtr0081821	3	1	1	196	3R	3834374	3834506	TTTCGAATGTACACCTTGC		58	3834145	3834165	GAAAGTTCTGTAGTCTCACTG		58	NA	
Drosophila melanogaster	50	CG12163	FBgn0037303	FBtr0078823	2	1	2	160	3R	1065332	1069568	GAGAAATATGTCCATCGCA		57	1064896	1064915	GAGGCTGAGTATACTTTCAC		57	NA	
Drosophila melanogaster	50	rpk	FBgn0022981	FBtr0078859	3	1	1	140	3R	473035	473130	GATTTAAGGTACTGCTTCATGC		59	473230	473249	GATGGTACTCTGCTATTCCC		59	NA	
Drosophila melanogaster	50	CG31526	FBgn0051526	FBtr0078929,FBtr0111213	2	2	2	184	3R	359280	359298	ATCTTCCCTTAGCCTTTGG		58	359446	359464	AATAACTACGATCGTGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41466	FBgn0084027	FBtr0111214	1	1	1	80	3R	298576	301804	GCCTAATTATGGACTGGTCC		59	301846	301865	TACACAAACTTCGGCTAGTC		59	NA	
Drosophila melanogaster	50	CG41468	FBgn0084029	FBtr0111210	2	1	1	105	3R	245351	245369	TGTTTGTTGCATGACAGAG		58	245264	245282	TTCTTATACTGCTTGGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32314	FBgn0047306	FBtr0072820	2	1	1	61	3L	1630827	1630845	TAGCGTGTACAATATGTCG		57	1630784	1630802	GAGATGGACATTGAACGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5932	FBgn0036996	FBtr0078196	3	1	1	60	3L	20453824	20453842	ACTACTGTTCAGCTTGGTG		59	20453866	20453884	GCTCAGACAATAGTCCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13813	FBgn0036956	FBtr0074827	1	1	1	60	3L	20225594	20225674	GAGCCTAATTCTGATCAACCT		59	20225693	20225714	CATAGCGAGACATTTGAAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34254	FBgn0085283	FBtr0112448	3	1	1	63	3L	18673581	18673599	GGAGCAGTAAACAATCCGA		59	18673626	18673697	CAAGGACTAGATGGCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18233	FBgn0036795	FBtr0075103	1	1	1	105	3L	18600086	18600165	TATGCTGGAGAAGTCTCAC		58	18600234	18600252	CATCGAAAGCATTGAACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG16775	FBgn0036767	FBtr0075156	3	1	1	60	3L	17879301	17879319	CATCTTTATCGGCACTCTG		57	17879259	17879277	AAAGTTGTCGTACTTGACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32186	FBgn0052186	FBtr0075172	1	1	1	80	3L	17788550	17788721	GGAGTCAAGGTTCTCATCTG		59	17788489	17788509	CAGTATTAGTCTCCACAGCTC		59	NA	
Drosophila melanogaster	50	Lmpt	FBgn0036672	FBtr0089452,FBtr0089457,FBtr0089456,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459,FBtr0089455	1	8	8	80	3L	16914082	16914100	GGAGCAGGAGATCTATTGC		59	16914143	16914290	GAGGTGATGACCTTATTGCA		59	NA	
Drosophila melanogaster	50	CG4982	FBgn0036598	FBtr0075469	2	1	1	61	3L	16294709	16294727	CTACTTGCCCAGCTATGAG		59	16294749	16294770	CATAACTCTCGTATCCTACGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12304	FBgn0036515	FBtr0075565,FBtr0075566	1	2	2	127	3L	15577530	15577748	ATTAAAGGAGGTGCCACTG		59	15577839	15577857	AGTGCGTAAAGGTCTTGAC		59	NA	
Drosophila melanogaster	50	CG17362	FBgn0036393	FBtr0075764	1	1	1	60	3L	13979674	13979694	GAGATTCGACTGATATGTTGG		58	13979713	13979734	GTGATCTAAACGAAGAAAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14118	FBgn0036323	FBtr0075870	2	1	1	199	3L	12885951	12886434	TTTCATCAAGGTTCTCCCTG		59	12886596	12886614	TCCAAAGACTCTCCATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsf2	FBgn0036299	FBtr0075966	1	1	1	84	3L	12525255	12525276	GAACACTTCCATACTCTATGAG		57	12525129	12525210	ACTAGAATCCTGGAACAGC		58	NA	
Drosophila melanogaster	50	CG32092	FBgn0052092	FBtr0076082	3	1	1	80	3L	11795856	11795875	TACAGCATAACGCTATACGT		58	11795734	11795815	CGACTGTACATCTATTACCCT		58	NA	
Drosophila melanogaster	50	CG7339	FBgn0036188	FBtr0076107	3	1	1	148	3L	11642455	11642473	TATCACGGGAGATCTTCGA		59	11642582	11642662	GTTAATGGCACCAATAATCCTG		59	NA	
Drosophila melanogaster	50	CG6175	FBgn0036152	FBtr0076183	3	1	1	68	3L	11282737	11284138	TATCGAACACGAATCGGAG		59	11282687	11282706	TAGTAATTTATGGGCGACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34001	FBgn0054001	FBtr0100056	2	1	1	70	3L	10627293	10627382	CAACCTATTCTCATCATTGGAC		58	10627413	10627431	ACCGCAAATGGTTTATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32064	FBgn0052064	FBtr0076288	2	1	1	60	3L	10484826	10484844	GACTATGAAGGTTGGACCC		59	10484868	10484886	TCCTGCGAGCTAAATTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3222	FBgn0036014	FBtr0076379	3	1	1	60	3L	9592584	9592603	CAACCCAGAAATATTCCCGA		59	9592623	9592644	TCTTACTATTGAACAGACCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsp26	FBgn0001225	FBtr0076496	2	1	1	183	3L	9370432	9370450	GCAGTGAACAACTCAAAGC		59	9370267	9370286	AAAGCAGAGTAGATAGCGAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Tequila	FBgn0023479	FBtr0076526,FBtr0076527	3	2	4	94	3L	9069886	9069969	GAACTTTCCACTGAGTTTATGG		59	9070024	9070042	TACTTGGTGCAATCGAAGG		59	NA	
Drosophila melanogaster	50	CG13306	FBgn0040828	FBtr0076592	3	1	1	66	3L	8742521	8742539	AATGGTTACATGGGTTTCG		57	8742473	8742491	ATTGGAAGTGATACGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7457	FBgn0035812	FBtr0076814	1	1	1	81	3L	7718885	7718959	ATCAAAGACCTTTCAGGTCAG		59	7718824	7718842	TAACTACGCCGATGTTCAG		59	NA	
Drosophila melanogaster	50	Or65a	FBgn0041625	FBtr0077004	1	1	1	138	3L	6314663	6314734	CTACTTACAGATCGCTGCA		59	6314836	6314854	TCATATACTCGACTGCGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Lcp65Ac	FBgn0020642	FBtr0076991	3	1	1	208	3L	6137934	6137952	AAGTAACGTTGACTAGCCG		59	6138124	6138212	CAAAGCAAAGTTGTAGCCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Sras	FBgn0029121	FBtr0077083	2	1	1	91	3L	5557283	5557302	TTATACCATACAGCCTGACG		58	5557356	5557433	GTCCAGATCGAAGTAGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32237	FBgn0052237	FBtr0073356	3	1	1	138	3L	4852138	4852157	GATGGATACCGCTACAAGAC		59	4852019	4852037	CTTCCTCAACTGGAACCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32242	FBgn0052242	FBtr0073326	3	1	1	76	3L	4503563	4503581	ATAGTGAACACTGGTCAGC		59	4503438	4503457	AAGTAGGAACAACTCTCGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	dib	FBgn0000449	FBtr0073205	1	1	1	77	3L	4063581	4063600	AGGATTCTTAATCAGGATGC		57	4063699	4063717	TACCATGTTCTGGGTAACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10359	FBgn0035452	FBtr0114608,FBtr0073136	3	2	2	110	3L	3613108	3613127	GACTACAAGGAGCTGATGAC		59	3613197	3613761	CAGCTGATCCAATTTCTTATCG		59	NA	
Drosophila melanogaster	50	CG12012	FBgn0035444	FBtr0073076	1	1	1	204	3L	3376924	3376942	AAGTCATGAACAGTCCCTC		58	3377161	3377179	TATCCAATCCGACATGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1271	FBgn0035392	FBtr0072986,FBtr0072988,FBtr0072987	3	3	4	226	3L	3054470	3054549	CATATGATTAGGGTTGATGGC		58	3054737	3054755	GTTTCGTACTCCTTGGGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32301	FBgn0052301	FBtr0072875	1	1	1	82	3L	2245337	2245358	GATTCCAAGAGTACAACATGAG		58	2245400	2245470	CATAGCCATTTGAAACACCA		58	NA	
Drosophila melanogaster	50	CG13890	FBgn0035169	FBtr0072587	1	1	1	102	3L	851800	851818	CAGAAAGATTGTGCTTGCC		59	851884	851961	GAAGTAGGTCGTTTCGGAG		59	NA	
Drosophila melanogaster	50	PHDP	FBgn0025334	FBtr0072224	2	1	1	78	2R	19771309	19771329	GATATCTACACCAGGGAAGAG		58	19770983	19771001	TTCTGTTCTGGAACCAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30414	FBgn0050414	FBtr0072032	3	1	1	194	2R	19272389	19272410	CCAAGTCATATAAACTCAGGAG		57	19272161	19272234	GGACGTAGTCTGAGTACTG		58	NA	
Drosophila melanogaster	50	CG9897	FBgn0034807	FBtr0071989	2	1	1	94	2R	18873371	18873446	GATAATTCTCGAGCCAATAGG		58	18873297	18873315	CTAAGGATCCGCACTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11362	FBgn0034737	FBtr0071836	1	1	1	176	2R	18449932	18450010	TTCTTGGGAATCACACTCG		59	18450148	18450168	CCTGTCCACATTTGTAATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mei-S332	FBgn0002715	FBtr0071761	1	1	1	151	2R	18010963	18011042	ATAGAAGAGCCAACAAGCC		59	18011155	18011175	GCTAAACAGACGATTGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	GlcT-1	FBgn0067102	FBtr0071755	1	1	1	60	2R	17964225	17964246	CCAAGATCAATAACATCCATCC		58	17964267	17964285	GAGATCATCACAAAGTCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fem-1	FBgn0034542	FBtr0086245,FBtr0086246	1	2	2	82	2R	16551360	16551447	GCAATAATGTATCGGTAGATCG		58	16551299	16551317	AAGATTGTGGTTCTCCACC		59	NA	
Drosophila melanogaster	50	CG13436	FBgn0034532	FBtr0086229	1	1	1	64	2R	16524965	16524986	CAAGATTGATGATACCCTATCC		57	16525010	16525088	CAAAGTGCGGAAATATAAGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	RpS18	FBgn0010411	FBtr0086273,FBtr0086274	3	2	2	240	2R	16151784	16151803	CCTGCGTATCATGAATACGA		59	16152066	16152084	ATCGATGATGTCCTTCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Scs-fp	FBgn0017539	FBtr0086552,FBtr0086553,FBtr0086554	1	3	3	93	2R	15280210	15280228	GATGACTATTGTGAGCGCT		59	15280075	15280155	GCTGAAATCGTATTCATCCTC		58	NA	
Drosophila melanogaster	50	CG18607	FBgn0034429	FBtr0086514	3	1	1	61	2R	15177146	15177166	CTTCTGCACTAGCTTCTACTC		59	15177189	15177207	AATAGATGCACTCCATGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jheh1	FBgn0010053	FBtr0086625	1	1	1	267	2R	14742285	14742359	ATCCGGATAAGACCATTGC		59	14741982	14742001	TTCTTACCCACTTTGTTGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5036	FBgn0028743	FBtr0089552	2	1	1	93	2R	13685114	13685203	TATCCGAGATTCCTAAACTCTC		58	13685257	13685275	TCTAAGTTGGACTATCCGC		58	NA	
Drosophila melanogaster	50	qkr54B	FBgn0022987	FBtr0086925,FBtr0086923,FBtr0086924	1	3	3	85	2R	13358315	13358334	GTACATACGCGATTGTATGG		58	13358382	13358455	TTTCTATCTCGCCTTCCAG		58	NA	
Drosophila melanogaster	50	RhoGEF2	FBgn0023172	FBtr0086970,FBtr0086971,FBtr0086969	3	3	3	81	2R	12929165	12929184	GATCAAGAAGAATCCTAGCG		57	12929228	12929313	TTTATCATCCTGCTTGGTC		57	NA	
Drosophila melanogaster	50	Amyrel	FBgn0020506	FBtr0087117	2	1	1	91	2R	12539606	12539624	GGATCACCTCATCGAACTG		59	12539477	12539551	GGCTGCTGTAGATGTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4439	FBgn0034132	FBtr0087087	1	1	1	60	2R	12379672	12379690	CAGAATCTCAACTCCTTCC		57	12379714	12379732	CTAGGATAATGGGTGGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30469	FBgn0050469	FBtr0087328	3	1	1	60	2R	11389572	11389591	GCAGCCTTACTCTGATACTC		59	11389610	11389632	GTACTATTAGGTCCTCCATTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12853	FBgn0040747	FBtr0087406	3	1	1	75	2R	10821195	10821213	ACAAGGGTGCTAAGAAAGG		59	10821252	10821270	TTCGATTCGGAAGTCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dro	FBgn0010388	FBtr0087436	2	1	1	233	2R	10633492	10633510	ACAATGAAGTTCACCATCG		58	10633707	10633725	TTGATCGGATGACTTCTCC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG8531	FBgn0033918	FBtr0087538	1	1	1	80	2R	10145863	10145943	GATTCATCAAAGAGCGACC		58	10145987	10146005	ATAGGTGTACTCTATCCGC		57	NA	
Drosophila melanogaster	50	CG8394	FBgn0033911	FBtr0087577	1	1	1	238	2R	10087788	10087878	TTTAGGCAAGGTAGCATCG		59	10087568	10087586	TATAGACACTGCACCAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cp1	FBgn0013770	FBtr0087592,FBtr0087591,FBtr0087593	2	3	3	167	2R	9849824	9854260	GAATGGCATACGTTCAAGC		59	9854391	9854409	ATCGGCGTACTTATTGACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12374	FBgn0033774	FBtr0087854	2	1	1	110	2R	8650820	8650838	AACTACGAGCAGATGAAGC		59	8650910	8650989	CGAAACGACATAGTTAAGCAG		59	NA	
Drosophila melanogaster	50	CG13197	FBgn0062449	FBtr0088078	2	1	1	81	2R	7579072	7579482	CTGAATCAGCATGTCAACG		59	7579527	7579545	CCATATCGGGTACGATCTG		59	NA	
Drosophila melanogaster	50	RpS15Ab	FBgn0033555	FBtr0088226	3	1	1	120	2R	6709608	6709626	TCAGTTTGGTTACGTTGTG		58	6709710	6709728	GATGTGAACTTGGTGTCTC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12935	FBgn0033547	FBtr0088221	3	1	1	61	2R	6697643	6697664	ATCTGGGCGATAATAAGTACAG		59	6697685	6697763	GCCATATCCTATCAGAAAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34222	FBgn0085251	FBtr0112415	1	1	1	141	2R	6207801	6207819	TAGACAGAAATGCCGATCC		59	6207678	6207696	GAAATAGCCGTTATTGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18446	FBgn0033458	FBtr0088376	1	1	1	180	2R	5760509	5760527	AAGGAGATATGGAGCACAC		58	5760671	5760751	GATCCGGATTGAAGTAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2065	FBgn0033204	FBtr0088922	3	1	1	60	2R	3551754	3551772	AGAACTGGACTTGAGTTCG		59	3551796	3551870	CTCTTTCTTGAATCCAGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG41447	FBgn0084011	FBtr0111278	1	1	1	106	2R	919155	919746	GACAACCAGAGCTTACTCC		59	919067	919085	ATTCCTCATAAGGGTTCGG		58	NA	
Drosophila melanogaster	50	Stlk	FBgn0046692	FBtr0111112	3	1	2	94	2R	434474	447872	TTTGTACAAGCAGGTTTCC		58	447930	447948	ATGAACATAATGCTCGGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me28S-A2958	FBgn0086037	FBtr0114313	2	1	1	60	2L	16417854	16417873	GAATGTCAGTGGATGATTGC		59	16417813	16417831	AGTTGGTAATCGACAACCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31601	FBgn0051601	FBtr0085947	2	1	1	74	2L	22041648	22042108	AGCTAAGGATACCTACCCA		58	22041592	22041611	CCGAACGATATTTCTAGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31612	FBgn0051612	FBtr0085908	2	1	1	86	2L	21765987	21766005	TTAACTGCAGCTATGTGGG		59	21762856	21762874	ACTCCTCACCATTCTTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Gr39b	FBgn0041245	FBtr0081522	1	1	1	67	2L	21368048	21368066	ATGCTGAGGGCTTTATGAG		59	21367941	21367959	ATAGGTAACTTTCGCAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hr38	FBgn0014859	FBtr0081397,FBtr0081398	1	2	2	207	2L	20687063	20687264	TAACCCTGATCACAGAACG		58	20686874	20686892	AGCTTCAGGTAGAAGATCC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG2614	FBgn0032873	FBtr0081388	2	1	1	80	2L	20657195	20657272	ACTAAGAACCATGAGGAACG		59	20657313	20657333	AAGTCCAGTAGGAAATTGAGG		59	NA	
Drosophila melanogaster	50	CG40169	FBgn0058169	FBtr0100178,FBtr0100179	3	2	2	165	2L	20237481	20237499	ATGTCTATTTGTGCCACCA		59	20238400	20238418	CATCATTTCGCATGGACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	spi	FBgn0005672	FBtr0081271,FBtr0081269,FBtr0081268,FBtr0081270,FBtr0100597,FBtr0081272,FBtr0081267	3	7	7	65	2L	19568669	19568687	ATCTACCGGTTTACAGCTG		59	19568622	19568640	TCTCCTTGTATTCGCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10189	FBgn0032793	FBtr0081284	2	1	1	60	2L	19491867	19491885	GTTCACTGTCGATCTACAC		57	19491825	19491843	AGTACTCAATAGCCAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6412	FBgn0032646	FBtr0080994	2	1	1	289	2L	17499929	17500052	GATGGAGATCTGTGGAAGC		59	17499658	17499676	TGAAACTCAAAGTCCAGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31735	FBgn0051735	FBtr0080791	1	1	2	174	2L	15895803	15895878	ATTAACCTGGACCACTGTG		59	15896016	15896034	TTCATACAGGATATGCCGC		59	NA	
Drosophila melanogaster	50	wek	FBgn0001990	FBtr0080764	1	1	1	60	2L	15766664	15766748	AAGAACTGAGAGCGATAACTC		59	15766624	15766642	ACCAACATGGTCTAATCCT		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG11865	FBgn0028947	FBtr0080753	2	1	1	60	2L	15617613	15617634	CCAATGGAGTGACAAATTATGG		59	15617654	15617673	GGACCATAGTGCATAATGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rk	FBgn0003255	FBtr0080611,FBtr0080613,FBtr0080614,FBtr0080612,FBtr0080610	2	5	5	81	2L	13985573	13985647	GCCGCAAATGCATAATCTC		59	13985510	13985531	CTCTTCGTTGAAGTTAATAGCC		59	NA	
Drosophila melanogaster	50	CG16800	FBgn0032462	FBtr0080417	1	1	1	255	2L	12966898	12967107	GGAGCAGGAAGAAGATCAG		59	12967326	12967344	CTTGTGATGAGACTCCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ACXE	FBgn0040506	FBtr0080416	1	1	1	87	2L	12928710	12928791	TCATATCGTGGATGTGTATCTC		59	12928839	12928857	CATGGCAAACATGACAGAC		59	NA	
Drosophila melanogaster	50	CG5325	FBgn0032407	FBtr0080326	3	1	2	150	2L	12094570	12094589	TGTTCCTACCATTCATGGAG		59	12094701	12094777	TTCTGGTACCTTTCCTTGTC		59	NA	
Drosophila melanogaster	50	CG31705	FBgn0028490	FBtr0080244,FBtr0080243,FBtr0080242	1	3	3	74	2L	11524599	11524617	TGTTTACTATCCACAGGCG		59	11524475	11524493	AATGCTCCAGCGATAAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	TfIIB	FBgn0004915	FBtr0080025	2	1	1	95	2L	10431810	10431829	TAAGGAGATATCCTCGATGG		57	10431886	10431960	TTCTTTCCATCATGAACCTG		57	NA	
Drosophila melanogaster	50	CG5385	FBgn0032215	FBtr0080062	3	1	1	60	2L	10311922	10311941	TTGAATAGCAGATCGACGTC		59	10311767	10311900	TATTTGAGGGTTCACCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13087	FBgn0032045	FBtr0079675	2	1	1	67	2L	8476836	8476854	AACCTCAACTCCCATTGTG		59	8476885	8476903	CCTTTAAGTCCGATTGCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL36A	FBgn0031980	FBtr0079546	2	1	1	152	2L	8042125	8042457	CCCATCTTCAGGAAGAAGG		59	8041991	8042009	GAACTGGATCATCTGTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gmd	FBgn0031661	FBtr0079049	2	1	1	105	2L	4976264	4976282	ATGGTAAAGTGGTGGAGAC		58	4976117	4976135	CGGTAGTTGATGACGATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15631	FBgn0031626	FBtr0077419	1	1	1	88	2L	4734243	4734314	CAGATCCGGAATACAATAGAG		57	4734175	4734196	CCTGGATTGAAATCTTCTATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	betaggt-II	FBgn0028970	FBtr0077631	1	1	1	105	2L	2879280	2879298	TCGTAAAGCCCTCAAATGG		59	2879367	2879385	TGGTTCTCGATGTACTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2862	FBgn0031459	FBtr0077718,FBtr0077719	2	2	2	66	2L	2770392	2770469	GATGATAAATGCGTTGCCT		58	2770499	2770517	GAGGAATCACGAGGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15398	FBgn0031446	FBtr0077741	2	1	1	119	2L	2695978	2696054	AAACCCTTCTACTGCTTGG		59	2695877	2695896	ATAGCGATAGACGAACAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34172	FBgn0085201	FBtr0112363	2	1	1	124	2L	2192831	2192976	AGCAGTTACATAAGAGACCT		57	2192664	2192682	AAATCTTATCCGCAGGTCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Or22b	FBgn0026397	FBtr0077874	1	1	1	80	2L	1523520	1523680	TGATATTGGACTATGTCGACG		59	1523720	1523740	GTACAATACCGATCAAGAGGA		59	NA	
Drosophila melanogaster	50	CR41101	FBgn0085782	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR31518	FBgn0051518	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-A771	FBgn0086067	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	inx5	FBgn0030989	FBtr0074698	3	1	1	60	X	19064089	19064107	GTATCTGCGCTACTACCAG		59	19064047	19064065	GTAGAAGACGAACGACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15046	FBgn0030927	FBtr0074628	2	1	1	204	X	18382307	18382327	GACTATCTGGCGGATATAGTG		59	18382010	18382085	GACAGTCAGTGTCTTCACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074573,FBtr0074575,FBtr0074574	2	3	6	163	X	18301908	18302558	CCTACCAATGCGAGATGAG		59	18286877	18286896	GGTGTAGTCCATATCGAAGC		59	NA	
Drosophila melanogaster	50	Frq1	FBgn0030897	FBtr0074545,FBtr0100239	1	2	2	80	X	18055282	18055301	GTTGAAACAGGATACCATCG		58	18061683	18061829	AATCCTTTGTGCCATTGAC		58	NA	
Drosophila melanogaster	50	CG8509	FBgn0030696	FBtr0074098	2	1	1	60	X	15704241	15704260	TGATAAGCACCTATGGACTG		58	15704283	15704301	TAGTAGTCTTCGATGGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS15Aa	FBgn0010198	FBtr0073792,FBtr0073795,FBtr0073793,FBtr0073794	3	4	4	120	X	13230102	13230120	TCAGTTTGGTTACGTTGTG		58	13230000	13230018	GATGCGAACTTGGTTTCTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	comt	FBgn0000346	FBtr0073754	3	1	1	115	X	13153746	13153837	GAAGAAGACTGTCTCCCAG		58	13153914	13153934	CCTTGAAATTGAAGACCAGTG		59	NA	
Drosophila melanogaster	50	CG17754	FBgn0030114	FBtr0071314,FBtr0071316,FBtr0071315	2	3	3	215	X	9148058	9148150	GATACCTGGACTCTGATCTG		58	9148328	9148346	TATGACATTCGGAATCGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071271,FBtr0071270	3	2	10	102	X	8770413	8770432	GCGTGTAAAGAAGTATGTGG		58	8770084	8770349	TGATCCAGTCATATCATCGG		58	NA	
Drosophila melanogaster	50	CG2059	FBgn0029942	FBtr0071047	1	1	1	97	X	7181865	7181947	ATCACCTTACATGAGACGC		59	7182007	7182026	CAAAGTGCACTAAATGTCCG		59	NA	
Drosophila melanogaster	50	CG10260	FBgn0040335	FBtr0070443	3	1	1	126	X	2526306	2526386	AATAATCCGAACTCCCAGG		58	2526476	2526494	TGAAGATGGTGATCACCTG		58	NA	
Drosophila melanogaster	50	eIF4E-7	FBgn0040368	FBtr0070252	2	1	1	60	X	1053973	1053993	CTCAATCCACTGAAGATACTC		57	1053933	1053952	TTGTTTGGATCATTCATCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAP1A	FBgn0025836	FBtr0112920,FBtr0112919	2	2	2	81	X	31080	31099	CCATATTACGCACCATTTCG		59	31143	32455	GCCGAAACTAAGTTCTTGC		59	NA	
Drosophila melanogaster	50	CG2246	FBgn0039790	FBtr0085677,FBtr0085676,FBtr0085674,FBtr0085678,FBtr0085675,FBtr0085673	3	6	6	82	3R	26421160	26421180	GGAGACTATTGTGGAGATCAG		59	26421037	26421117	TATTGTTGGCATCCTTTGTG		58	NA	
Drosophila melanogaster	50	Nup358	FBgn0039302	FBtr0084813	3	1	1	88	3R	21078944	21079019	TCCGAATATGTTTGGTCCTC		59	21079070	21079088	CAATGTAAGGTGCTACCGA		59	NA	
Drosophila melanogaster	50	CG13616	FBgn0039200	FBtr0084618	1	1	1	147	3R	20219060	20219078	TTTACGATGAGGTGCAGTC		59	20219250	20219268	CTAAAGACAGTCCTGACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18428	FBgn0039149	FBtr0084543	3	1	1	69	3R	19935288	19935306	GGATGACTTTGCCATACCA		59	19935405	19935424	GTATTCCTCTGGAGTTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33111	FBgn0053111	FBtr0084529,FBtr0084530,FBtr0100312	1	3	3	120	3R	19633221	19633304	AATTCACAATCTCACCAGC		58	19633119	19633137	GATCTTGAAGAGCTTTCGC		58	NA	
Drosophila melanogaster	50	CG10157	FBgn0039099	FBtr0084435	2	1	1	84	3R	19505326	19505344	ACATTCTGAGGAAGTACGG		58	19505389	19505468	GCGTTATAAACGTTATCCAGAG		59	NA	
Drosophila melanogaster	50	CG6623	FBgn0038303	FBtr0083138	3	1	1	149	3R	11042253	11042271	AAACTTTCACCAAGTGTCC		58	11042063	11042142	GGACATGCTAATACATAGCTG		58	NA	
Drosophila melanogaster	50	Octbeta3R	FBgn0053959	FBtr0099998	1	1	5	147	3R	8344783	8344895	ATCTTTAAGGAGGCGATTCG		59	8338729	8338866	GCGATGTGATGACATACCA		59	NA	
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	2	15	15	121	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811941	7812031	TTCTTCAGGATGTTGGAGG		58	NA	
Drosophila melanogaster	50	Csk	FBgn0086903	FBtr0082447,FBtr0082446,FBtr0082444,FBtr0082448,FBtr0082445	2	5	5	84	3R	7460837	7460855	CAAATCAGACATGTGGAGC		58	7460710	7460789	GGCTAATGGAATTCTGGGA		59	NA	
Drosophila melanogaster	50	CG14688	FBgn0037819	FBtr0113215	3	1	1	92	3R	6504122	6504140	AACTGATGGTCTACGATCG		58	6503773	6503791	CGTGGATTAGAATGCAGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Syn	FBgn0004575	FBtr0089476,FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471	3	5	5	80	3R	6041343	6042795	TGGATGAGATATCCGAGCT		59	6042837	6042857	TATACTCTCGTCCATCTTTGG		58	NA	
Drosophila melanogaster	50	Teh1	FBgn0037766	FBtr0082151	3	1	1	130	3R	5690792	5690810	GATAACGGTCATCTCGTCC		59	5654507	5690701	TCGAAGTATCACTGAGATTCTC		59	NA	
Drosophila melanogaster	50	CG9363	FBgn0037697	FBtr0082043,FBtr0082041,FBtr0082042	1	3	3	60	3R	5283931	5283949	TACCTCAGGTGTTCAATGC		59	5283812	5283831	AGAATTATGGGATACGGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34113	FBgn0083949	FBtr0110806,FBtr0110807	1	2	2	81	3R	1712723	1712808	GATGTTACTCAAACCCACG		58	1712660	1712678	ACAGGTGAGATTGTACTGC		59	NA	
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0110933,FBtr0078809,FBtr0078810,FBtr0100199	3	5	15	83	3R	1139715	1139734	TCCAGCAAATCCGATAAGAG		59	1139211	1139672	GGTGGAGTTCTTACTACTATCC		59	NA	
Drosophila melanogaster	50	tacc	FBgn0026620	FBtr0089955,FBtr0089951,FBtr0089953,FBtr0089949,FBtr0089952,FBtr0089954,FBtr0089950	1	7	7	134	3R	561270	561372	TCTGCATGTGAAATACGAG		57	561154	561172	TTCTTCATCTTGTCGTAGC		57	NA	
Drosophila melanogaster	50	CG41451	FBgn0084014	FBtr0111176	1	1	1	65	3L	22958320	22958338	GTGGACACAGTGTAAATGC		59	22958366	22958385	GCTTATCCATTGTATTTGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6838	FBgn0037182	FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186	1	4	4	88	3L	22709292	22709405	TCAGTAAGGATCCAAACCC		58	22709222	22709240	ATTAAGCAGATTCACGCTG		58	NA	
Drosophila melanogaster	50	CG15374	FBgn0037152	FBtr0078483	1	1	1	60	3L	22158541	22158559	CACTAACGATGTAACCGCT		59	22158583	22158601	AGGATTTCTGGATACGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5059	FBgn0037007	FBtr0078218,FBtr0078216,FBtr0078217,FBtr0078219	3	4	4	116	3L	20508982	20509000	TGATGAGCTCAGAAACGTG		59	20508709	20508828	TCAATGTTCCAGCTACTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG5262	FBgn0036988	FBtr0078230	2	1	1	103	3L	20422687	20422707	GTAATGTTCTATCTCTGCCTG		57	20422478	20422623	TTTGTTTGGTCACATACGAC		58	NA	
Drosophila melanogaster	50	PGRP-SB1	FBgn0043578	FBtr0075348	3	1	1	60	3L	16720881	16720899	ATCGCCTTCTAGGATTTCC		58	16720839	16720857	AGGATTGTCCGAATGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15715	FBgn0036538	FBtr0075536	1	1	1	62	3L	15829895	15829913	AAAGGCACTTGTCTATGTG		57	15829320	15829338	TTATACGTCTTGGGATCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	l(3)S147910	FBgn0086699	FBtr0075960	1	1	1	60	3L	12518076	12518094	AGTTCTTCATAGACAGCGG		59	12518117	12518136	GTTAGGTAGTCTACGAAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6282	FBgn0035914	FBtr0076636,FBtr0076637	1	2	2	98	3L	8607898	8607974	TCTGCAATGATGGACTGTG		59	8608034	8608054	TGATCACATTGAGGGATATGG		59	NA	
Drosophila melanogaster	50	smid	FBgn0016983	FBtr0076851,FBtr0076850	3	2	2	81	3L	7378360	7378440	TCAGTTAACGAACAGGACC		59	7378483	7378503	TATCATTTAGAGTGGGTACCC		58	NA	
Drosophila melanogaster	50	CG32264	FBgn0052264	FBtr0073186,FBtr0073187	1	2	5	90	3L	3718983	3721547	ATTAGACTATGCAGGCAGC		59	3718911	3718929	TTTCGCGTATCACAAATGG		58	NA	
Drosophila melanogaster	50	CG17723	FBgn0035432	FBtr0073057,FBtr0073055,FBtr0073058,FBtr0073054,FBtr0073056	1	5	5	85	3L	3312395	3312526	CATATTAGGTGCCGTAACCT		59	3312574	3312592	GTAGAGTGGATACCCTCGT		59	NA	
Drosophila melanogaster	50	CG34209	FBgn0085238	FBtr0112402	2	1	1	147	2R	18926495	18926513	AGTTGATCTGAGCTTACGT		58	18924319	18924337	TGGGATTGTACGATGTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gr58b	FBgn0041238	FBtr0071732	2	1	1	60	2R	17866830	17866850	CAGCTCTATAAATACTCGCTG		58	17866790	17866808	CTATGGCCCTCGTTATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15071	FBgn0034377	FBtr0086605	3	1	1	60	2R	14584406	14584424	GAAACTGGTCGAAATCCAC		58	14584445	14584466	TGATCAGACCTATTAGATCTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab4	FBgn0016701	FBtr0086830,FBtr0086831,FBtr0086829	1	3	3	82	2R	13461765	13461847	AGAGAACGAGCTTATCTTCC		58	13461892	13461910	TGGTCTTTGAGCACTTGAG		59	NA	
Drosophila melanogaster	50	CG3687	FBgn0034097	FBtr0087132	2	1	1	74	2R	12124365	12124383	GTGACGAAGGATCGATCAG		59	12124420	12124439	GCAAATTGATGTGGTAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dg	FBgn0034072	FBtr0087258,FBtr0087257,FBtr0087256	3	3	3	132	2R	11972593	11972678	TTTATGGCCTACCTCTGGA		59	11972479	11972497	TTAATGGTCCTAACCGCTC		59	NA	
Drosophila melanogaster	50	CG6347	FBgn0033874	FBtr0087637	1	1	1	71	2R	9725503	9725521	AGAAAGGAGATAGCCACCT		59	9725994	9726015	GATATGGCCATTCGTATATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4663	FBgn0033812	FBtr0087761	3	1	1	300	2R	9116539	9116557	CTTGATCATGAAGCTGCTG		58	9116121	9116139	TTGATCCTGCATCTCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4646	FBgn0033810	FBtr0087764	3	1	1	94	2R	9107490	9107508	TCATGAAGTGCAAGATGTG		58	9107355	9107373	CTTAAATGCGCCAGAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835	3	6	8	110	2R	8504608	8504626	CCTGCATATTTACCCACTG		57	8504697	8505312	GACGTCTACCATTCTAAATCTG		58	NA	
Drosophila melanogaster	50	CG8170	FBgn0033365	FBtr0088665	3	1	2	88	2R	4909291	4909309	CTACAGTCTGCAGGATCTG		59	4908980	4909240	TTGTGATGTCGACTTTCTCC		59	NA	
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	2	9	9	94	2R	4568146	4568164	AGATCAAGACCTGCTTGTG		59	4568222	4568303	GGTCATATCACGGTAGTCC		58	NA	
Drosophila melanogaster	50	CG17082	FBgn0039994	FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289	2	6	6	90	2R	644086	644172	TCTATTGGTCGATCAAAGGAG		59	644224	644242	CATTCTCTGAGGCTGACAG		59	NA	
Drosophila melanogaster	50	smi35A	FBgn0016930	FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289	2	5	5	90	2L	14195795	14195814	CGGATGGATCTCATAATGTC		57	14189225	14195742	AGGTTCAAGCTCATTAGCT		58	NA	
Drosophila melanogaster	50	CG6043	FBgn0032497	FBtr0113039	3	1	5	80	2L	13274313	13274336	CGTATCATACCGATAACTCTAGAG		59	13274374	13274707	TGGGTAATTCTGGTAACCAC		59	NA	
Drosophila melanogaster	50	CG5355	FBgn0032242	FBtr0080047	2	1	1	101	2L	10411501	10411519	AAACGTGATAGTGTTGAGC		58	10411351	10411436	GATGAACATAAGCCCAGAG		57	NA	
Drosophila melanogaster	50	CG31715	FBgn0051715	FBtr0079996	2	1	1	181	2L	10341918	10342156	GGAGCAGACATAAATAGAAAGG		58	10342351	10342371	GCAAGGAGTTTCTTAATCTCG		59	NA	
Drosophila melanogaster	50	CG12560	FBgn0031974	FBtr0079548	1	1	1	95	2L	8008748	8008766	ATTTGGGTGCTTATGACGA		59	8008606	8008624	TATGTGACTCCAGAACCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31637	FBgn0051637	FBtr0079287	2	1	1	80	2L	6525757	6525777	TTCCACATATCGAGATTCCAG		59	6525818	6525899	TCCTGGATTTGCTTGATCTC		59	NA	
Drosophila melanogaster	50	CG9098	FBgn0031762	FBtr0079229,FBtr0079228	2	2	2	150	2L	6009356	6009376	GGTGTGATAATCAAGAATCCC		58	6009171	6009189	CAAAGTCAAACTTGCTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Gs1l	FBgn0019982	FBtr0110812	3	1	2	161	2L	4456511	4456734	GCAGATTACGTTTAGGAAACG		59	4456060	4456388	TATATCCTCTCCGTGTCCA		58	NA	InUTR
Drosophila melanogaster	50	l(1)G0003	FBgn0027335	FBtr0074616	3	1	1	106	X	18531741	18531760	ATAATTGGTCACGAGAAGTC		57	18531593	18531672	ATTAGCATTAGTTCCTCGC		57	NA	
Drosophila melanogaster	50	CG5010	FBgn0030821	FBtr0074387	1	1	1	126	X	17044230	17044248	CAAACAGTTCATCCAGTGC		59	17044338	17044356	GATATTCTACCGGAGCTGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	lic	FBgn0015763	FBtr0073720	2	1	1	102	X	12985990	12986008	GGTCTTCCTTCACGATCTG		59	12986160	12986178	AATGACTTTCAGTTGAGCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0073589,FBtr0100305,FBtr0073587,FBtr0073586,FBtr0100303,FBtr0100302,FBtr0073584,FBtr0100304,FBtr0073588,FBtr0073585	1	10	10	80	X	11848176	11848195	ACTTCCCTATGTCTGTTTGC		59	11846240	11848134	TTGATATTCCCGAACACCTG		59	NA	
Drosophila melanogaster	50	PPP4R2r	FBgn0030208	FBtr0071453,FBtr0071451	1	2	3	105	X	10373658	10373676	CCATCTTCAAGTGGTCCAG		59	10373745	10373881	TAGTTGGGAATCTCCTCCA		59	NA	
Drosophila melanogaster	50	Ctr1A	FBgn0062413	FBtr0070951	1	1	1	105	X	6559634	6559652	GAATATCGACCTGTGACGG		59	6560884	6560902	TAATCGACAGCATCGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	br	FBgn0000210	FBtr0070263,FBtr0070266,FBtr0070267,FBtr0070262,FBtr0070265,FBtr0070264,FBtr0070261	2	7	7	93	X	1529978	1529996	GCAGTCCTTCCTTAAGACC		59	1530053	1530146	CTGTATCTGAGCCAGATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3176	FBgn0029524	FBtr0070078	1	1	1	78	X	376452	376554	CTGCGTGACTTTATTTGGT		58	376596	376614	CTAGCTGAGGAACATCTGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG41279	FBgn0085595	FBtr0114039	2	1	1	60	U	2221218	2221237	ATTGAAGCGACAATATGCAG		58	2219704	2221196	TTCTTCTTGGTGTATCGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gr97a	FBgn0041224	FBtr0085081	1	1	1	63	3R	22791201	22791219	GTATTTCTGGCTGTTCCCT		59	22791099	22791176	TGAGGGTTTGGTTACTTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10254	FBgn0027512	FBtr0084476,FBtr0084477	2	2	2	117	3R	19516918	19516936	GGTAATAGAAGATCCGCCG		59	19516756	19516840	GCCAGAATCATTCTTAGTACGA		59	NA	
Drosophila melanogaster	50	CG15499	FBgn0038891	FBtr0084124	3	1	1	179	3R	17357664	17357761	GATGAAGGTGTGGAAACGA		59	17357356	17357377	GCCAGACAATTATGGATTAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31179	FBgn0051179	FBtr0084110	2	1	1	68	3R	17325473	17325494	GCTGGTATTATGGTAGGTTAGG		59	17325523	17325541	ACTTCCTTCCTATTTCGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS33	FBgn0038426	FBtr0083316	2	1	1	67	3R	12262127	12262146	GAACTACCTCTCAAATCGCA		59	12262017	12262097	CCACCTTCATGGACTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ksr	FBgn0015402	FBtr0078766	3	1	1	60	3R	1306909	1306927	CAAGGTGATTATCACGGAC		57	1306867	1306885	CATATCACAGTAGAGCAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7338	FBgn0037073	FBtr0078342	2	1	1	92	3L	21330395	21330414	CAATTGATAATCCAGTGCGG		59	21330469	21330543	GTAGCGTTCGAACTTATGC		58	NA	
Drosophila melanogaster	50	CG14060	FBgn0036683	FBtr0113178	2	1	1	74	3L	16976954	16978348	GTTCATTGTTGTAAGGGAAAGG		59	16978383	16978401	TTGTCTCTGATCCGTTTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10732	FBgn0036365	FBtr0075851,FBtr0075852	2	2	2	144	3L	13437171	13437316	TAGGAAAGTTGTAGAGACGA		57	13437485	13437503	TAGGGACTGAATGGATTGG		58	NA	
Drosophila melanogaster	50	CG14132	FBgn0040817	FBtr0113334	3	1	1	92	3L	11708272	11708290	AATACGAGAGTGGAATCGC		59	11708198	11708216	CGGCACAAACTTTATCCAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	SuUR	FBgn0025355	FBtr0076203	1	1	1	80	3L	11059304	11059322	GAGGTATTCAGTAAGCGCA		59	11059364	11059470	ACGAAAGTCCTTGATGTACTC		59	NA	
Drosophila melanogaster	50	CG14823	FBgn0035734	FBtr0076908,FBtr0076905	3	2	4	191	3L	7060745	7060763	CTGCCACGGATAATATTCC		57	7061142	7061160	CATAGCTACGCACAATACG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Dat	FBgn0019643	FBtr0072255,FBtr0072254	2	2	2	157	2R	20043491	20044428	TTTCTTCAAGGATGAACCG		57	20044548	20044567	GCCTCATAAGTCCATTTAGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Amyrel	FBgn0020506	FBtr0087117	1	1	1	90	2R	12539605	12539623	GATCACCTCATCGAACTGG		59	12539477	12539551	GGCTGCTGTAGATGTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2614	FBgn0032873	FBtr0081388	1	1	1	80	2L	20657196	20657272	CTAAGAACCATGAGGAACG		57	20657314	20657334	GAAGTCCAGTAGGAAATTGAG		58	NA	
Drosophila melanogaster	50	bwa	FBgn0045064	FBtr0081331	3	1	1	184	2L	20069274	20069293	GATACTATCCCAAGTTCGTG		57	20069512	20072369	CCTCTGGTCACTAACTCTC		58	NA	
Drosophila melanogaster	50	CG4161	FBgn0028892	FBtr0080735	2	1	1	60	2L	15433563	15433581	GCCTATTTGACGCTAAGGA		59	15433605	15433623	GGAGCCGCATAATAATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Or-CD10	FBgn0065071	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR31576	FBgn0051576	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snmRNA:430:CR33743	FBgn0053743	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CR41509	FBgn0085792	FBtr0114245	2	1	1	63	YHet	327637	327656	CAGAAACCATTTGACATGGT		58	327522	327612	CTTGATCATCCTTTACTGCT		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12061	FBgn0040031	FBtr0113684	1	1	3	205	XHet	23169	25000	GGTTATGTGATGAACACGC		59	25168	25187	GAAGAAGATGGATCTAGCAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	slgA	FBgn0003423	FBtr0077207,FBtr0077204,FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077206,FBtr0077210	3	8	8	104	X	21253980	21254060	CAACACGATTGTAAAGGCTG		59	21254126	21254145	ATCATTTCCAGGGTGATACG		59	NA	
Drosophila melanogaster	50	CoRest	FBgn0053525	FBtr0091480,FBtr0091482,FBtr0091481	1	3	5	171	X	19418034	19418052	ATCCATAGCCAGTTTGGTC		59	19418187	19419220	GGCGATTATCTTGTCATCG		58	NA	
Drosophila melanogaster	50	CG32533	FBgn0052533	FBtr0074786	1	1	1	104	X	19372183	19372201	AAACGCTCTCAGAGAAACC		59	19372043	19372061	GAAGATAAGGACGTCACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6540	FBgn0030943	FBtr0074601	2	1	1	76	X	18543308	18543326	ATAACATCATATCGCCGCA		59	18543366	18543384	GAATATCAGGTCCATGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wupA	FBgn0004028	FBtr0074526,FBtr0074523	1	2	7	80	X	18004587	18004605	CAACGCGTATACAGTTTGG		59	18000953	18004544	GAGATCGTTGATCTCTTGGG		59	NA	
Drosophila melanogaster	50	CG7192	FBgn0030894	FBtr0074527,FBtr0074528	2	2	2	84	X	17992531	17992619	TGAATGATATACCTACACTGCC		59	17992468	17992486	CACAAGATCTGACGTTCCA		59	NA	
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089658,FBtr0089660,FBtr0089657,FBtr0089661,FBtr0089659,FBtr0089662,FBtr0089663	1	7	7	82	X	17844790	17845235	CTAACTGTCAGGTTCCTCG		59	17844726	17844744	ATGATGGCGATTATGTCGA		58	NA	
Drosophila melanogaster	50	Arp8	FBgn0030877	FBtr0074544	2	1	1	72	X	17753975	17753993	GAAGAGCGTCTGAAGATCC		59	17753921	17753939	CATAGACATCGTTGACCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fim	FBgn0024238	FBtr0074443,FBtr0074441,FBtr0074442	3	3	3	118	X	17182048	17182066	ACTCAATCTAGCCTTCGTG		59	17181556	17181966	AATTGCGGTAGGTCTTCTC		59	NA	
Drosophila melanogaster	50	CG5172	FBgn0030830	FBtr0114540	1	1	2	297	X	17115619	17115637	CTGATCGCCTTAACCTCAG		59	17116320	17116338	CATAACCTCCTTGTCCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13002	FBgn0030804	FBtr0074343	1	1	1	77	X	16784352	16784370	GGAGGAGATGATTTGTCCG		59	16784540	16784558	TTTCTCACAAACACGTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32569	FBgn0052569	FBtr0074327	3	1	1	60	X	16632516	16632534	GAAGCAACAGGAATTGGAG		58	16632558	16632576	TTCGACTTGAGACTTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8958	FBgn0030725	FBtr0074207	1	1	1	80	X	15977985	15978003	AGGAGATTGTTTCGGAGAC		58	15978047	15978119	ACTTCACAACTAGACAGGG		58	NA	
Drosophila melanogaster	50	exd	FBgn0000611	FBtr0074136,FBtr0074135,FBtr0074137	3	3	3	94	X	15888237	15888256	GAATTGGAGAAGTACGAGCA		59	15888313	15888394	TTTGGTGTAATGGGTCTCG		59	NA	
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	3	9	9	111	X	15788792	15788878	AGTTACCGAATATGGCGAG		59	15788952	15788971	TTTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	acj6	FBgn0000028	FBtr0074015,FBtr0100328	2	2	4	92	X	15271599	15271617	TCATCATCCTGCGATTCTC		59	15265710	15266193	GAAGATATCACCATTCTGACG		58	NA	
Drosophila melanogaster	50	rab3-GEF	FBgn0030613	FBtr0112983	1	1	2	95	X	14993063	14993856	TGGATAAGTTTACGCTGCA		59	14993915	14993933	TATTCTTGCTCACTCCAGC		59	NA	
Drosophila melanogaster	50	CG32603	FBgn0052603	FBtr0073894	2	1	1	72	X	14079098	14079116	TCGTACTCCTCTTACTCCG		59	14079152	14079170	AGTAGGTCTTCACAACAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10990	FBgn0030520	FBtr0112981,FBtr0073840	1	2	2	165	X	13644648	13644666	AAGCAGCTAGATCTCACCT		59	13644371	13644389	TCTTGTCGGTTAGGAATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	up	FBgn0004169	FBtr0073851,FBtr0100563,FBtr0073852	2	3	6	91	X	13493488	13494116	GATGAAGAGTACACCAGCTC		59	13490749	13490767	TGACGCTTGATGAACTCTG		59	NA	
Drosophila melanogaster	50	up	FBgn0004169	FBtr0073851,FBtr0100561,FBtr0073853,FBtr0100563,FBtr0073852,FBtr0100562	3	6	6	169	X	13489267	13489365	TCAGGACTACGATTTGAAAGAG		59	13489054	13489072	TCTTGTCGTCATAAGAGCG		59	NA	
Drosophila melanogaster	50	CG1640	FBgn0030478	FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769	1	6	6	82	X	13268114	13268132	ATTCAACCGTTAGACGTCC		59	13268315	13268333	ATGTTATCCAGTGTGAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	sno	FBgn0005410	FBtr0073736	1	1	4	84	X	13094927	13097750	GGTAACGGTGAGTTATGCA		59	13094861	13094879	CTGATTATTCCCGACTCCG		59	NA	
Drosophila melanogaster	50	CG2186	FBgn0030243	FBtr0073381	1	1	1	204	X	10752389	10752407	ATGAGTTGCTACTCTCGGA		59	10752640	10752658	AAAGTTGGTGCTACCTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2124	FBgn0030217	FBtr0071491	1	1	1	60	X	10491015	10491033	ATGGGCTTCTTTAAGACAC		57	10491057	10491075	GATAGAGTTGCGTTAGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32687	FBgn0052687	FBtr0071458	3	1	1	169	X	10377269	10377389	AAGAATCTGACTGAGCTGAG		59	10377119	10377137	TTCAAATACTCGGCCAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12640	FBgn0030202	FBtr0071464	2	1	1	60	X	10326711	10326729	CAACCAGAACCAGTACCAG		59	10326669	10326688	TTGATTCTGATTCGGACTCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12645	FBgn0030181	FBtr0112973	1	1	2	99	X	10048128	10048146	AAGAGGTCACCTAATGCTC		58	10048443	10048461	AGCCATTCCATAGATACGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1354	FBgn0030151	FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386	3	4	4	161	X	9674775	9674793	TCTGCTCAAGAACTTGGAC		59	9674918	9675202	AAGGCCTCAATATCATGGG		59	NA	
Drosophila melanogaster	50	l(1)G0232	FBgn0028341	FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407	1	6	6	83	X	9524045	9524065	CCGTCGGATTATATTAATGCG		59	9523917	9524001	CTTTGGTAATGGACCTTGAG		58	NA	
Drosophila melanogaster	50	Lim1	FBgn0026411	FBtr0071279	3	1	1	81	X	8681694	8681715	GACAATAAGTTCATCTGCAAGG		59	8662967	8681652	TTAATGAATCGCTCAGCGA		59	NA	
Drosophila melanogaster	50	CG12065	FBgn0030052	FBtr0071215,FBtr0071214	1	2	4	91	X	8480265	8480589	ATACACCACAGTCGATTCC		59	8481291	8481311	GAGTATACACATTCGATTCGC		58	NA	
Drosophila melanogaster	50	CG12065	FBgn0030052	FBtr0071217,FBtr0071215,FBtr0071214,FBtr0071216	3	4	4	68	X	8481547	8481627	GATCAGCAATAGCAAGGAG		57	8481659	8481677	AAGTAGGTCTTCACGTCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Es2	FBgn0023506	FBtr0071198	2	1	1	60	X	8357164	8357183	GAACGTTACCATTGATACGG		58	8357204	8357224	TTTAGTGGGTATCTTGAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17982	FBgn0030006	FBtr0071191	1	1	1	60	X	8037123	8037141	GACAAAGGTGAATACAGCC		58	8037081	8037099	GATAATCGTGGACGTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4557	FBgn0029912	FBtr0070994	2	1	1	158	X	6741283	6741301	CAACACAACGACCTTTGAG		59	6741423	6741500	TTCTCCTTCATCGTTTCCA		58	NA	
Drosophila melanogaster	50	pod1	FBgn0029903	FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966	2	5	6	106	X	6701674	6702857	CAATTATTCCACGTTTGGGTC		59	6702925	6702943	GATATTCTCGTGGGATCCC		58	NA	
Drosophila melanogaster	50	CG4660	FBgn0029839	FBtr0070886	1	1	1	196	X	5973808	5973827	GTTGTACCACATGAACAACG		59	5973505	5973649	CCCAGTAAATAATCCGCGA		59	NA	Nonspecific
Drosophila melanogaster	50	CG33080	FBgn0053080	FBtr0070845,FBtr0070844	3	2	2	141	X	5604995	5605517	TATTTCTGATCGGCTATGCC		59	5604873	5604892	AATTGACCCGATATCACCTC		59	NA	
Drosophila melanogaster	50	CG6978	FBgn0029727	FBtr0070715	1	1	1	60	X	4679439	4679460	CTTCAAGATCAATCATCTGGAC		58	4679481	4679499	GGTTACGGAGATTAGCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070509,FBtr0070510	2	2	14	162	X	3140216	3140334	GAGTATATTGCCGGTACCTC		59	3140459	3140477	AAGTCTCGTTCGAATTGCT		59	NA	
Drosophila melanogaster	50	mRpL16	FBgn0023519	FBtr0070314	1	1	1	245	X	1784569	1784656	ATACCAGAATGTGGAGCAG		59	1784865	1784883	GTGTTGACGTTCATCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14811	FBgn0029590	FBtr0070373	2	1	1	61	X	1715817	1715835	TTCTCCCAAGCTTGTAACC		59	1715774	1715793	GTGATAGAAATACGACGAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14798	FBgn0029588	FBtr0089693,FBtr0089694	2	2	2	293	X	1587078	1587096	AAATCGAGCCTCACATCAG		59	1587475	1587493	GACAAAGTCATGGGATCCT		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG11379	FBgn0040362	FBtr0070198	1	1	1	62	X	1074535	1074553	CATCGCTCTTACTGGAGAC		59	1074579	1074597	ACAGTTTGCTAAGGGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13361	FBgn0029532	FBtr0070149	3	1	1	60	X	647114	647132	CCAAGTTCTCTATCCACCA		58	647072	647090	GAATCGCTCTACAATCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	elav	FBgn0000570	FBtr0114366,FBtr0070091,FBtr0100254	1	3	3	60	X	412385	412404	AGTAGGCTTTATTCGATTCG		57	412344	412362	GTTCAAGGCAATGATAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41428	FBgn0085647	FBtr0114091	1	1	1	60	U	4187017	4187036	GATTCAATCAAGTGGACGAC		58	4186976	4186996	TGCTGACTCGAATGATATCTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CaMKII	FBgn0004624	FBtr0100148	1	1	6	106	4	1065803	1065822	CGATTCATCTAGCACTACTC		57	1059076	1064103	AAAGGTTAACTTCAGGCTC		57	NA	
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0089226,FBtr0089223,FBtr0089225,FBtr0089224	2	4	5	118	4	1036234	1037009	AGATTTAGAGTGGAGAACAGG		58	1036136	1036154	CCGGAACATTATAGTGCTG		57	NA	
Drosophila melanogaster	50	bt	FBgn0005666	FBtr0089793	2	1	4	101	4	748859	751408	CTAAACTTCGACAGTGCGA		59	751472	751491	CTTCATGGTGATCAATGTGC		59	NA	
Drosophila melanogaster	50	Ephrin	FBgn0040324	FBtr0089078,FBtr0089075,FBtr0089077,FBtr0089076	1	4	4	82	4	596940	597611	TTAACGGAAACGATGACCA		59	597655	597675	ACCACTATTATAGGTCAGCTC		58	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	2	7	7	83	4	208987	209060	CGGATCATAGACTTACGGA		57	208922	208940	CGAAGCATGGTTTAGTCAG		58	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156	1	8	10	80	4	115558	115579	ACGAGATAACTATGGTTACGTG		59	115618	120041	ATATTATTGCCTCCCGAATCC		59	NA	
Drosophila melanogaster	50	CR34285	FBgn0085314	FBtr0112481	1	1	1	60	3R	15212525	15212544	AAAGTCATTGGTTCTCTGGT		59	15212650	15212668	AGGTAGGAAGTAAACGAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	faf	FBgn0005632	FBtr0085844,FBtr0085843	2	2	2	80	3R	27608527	27608648	GAAGATGAAGAGGAACACTG		57	27608689	27608709	CACACTAAGGTTGTATAGCAC		58	NA	
Drosophila melanogaster	50	ttk	FBgn0003870	FBtr0085827,FBtr0085825,FBtr0085829	2	3	6	150	3R	27554189	27558647	AACAGCACTTCCGTTACTC		59	27558761	27558779	TTTCATCGCTGATCTCCAG		59	NA	
Drosophila melanogaster	50	CG11318	FBgn0039818	FBtr0085739	2	1	1	60	3R	26934623	26934643	ACATCTGGTTTACTGTACGTC		59	26934583	26934603	TATGTAGTCGTGCTGAAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33483	FBgn0053483	FBtr0089295	1	1	1	88	3R	26726714	26726735	CGAAGTACAATCCGATATTCAG		58	26726587	26726666	TAGATCATGATCGAATGGGC		59	NA	
Drosophila melanogaster	50	RpL32	FBgn0002626	FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555	1	4	5	60	3R	25871413	25871431	CGGATCGATATGCTAAGCT		59	25871309	25871327	ACTCTGTTGTCGATACCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	janA	FBgn0001280	FBtr0085595,FBtr0085597,FBtr0085596	1	3	3	84	3R	25864787	25864805	GAAGGTCTACGGATACTCG		58	25864615	25864633	GTAGTCCGGGTATTTGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Axn	FBgn0026597	FBtr0085554,FBtr0085553,FBtr0085555	2	3	3	94	3R	25856981	25856999	CACCTCAACTTCTACTTCG		57	25857057	25857153	CGCAAGAATCTGTAGATGG		57	NA	
Drosophila melanogaster	50	Nlp	FBgn0016685	FBtr0085552	2	1	1	136	3R	25831117	25831135	AAGGAGAACGAGTTCAACG		59	25835490	25835509	TTGAATGTCACCTTCGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11504	FBgn0039733	FBtr0085548,FBtr0085547,FBtr0085549	3	3	3	61	3R	25824886	25824905	AGGATAGCTACTTTGAGGAG		57	25824929	25824947	GTAGTACATGCGTTTGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15525	FBgn0039732	FBtr0113307	1	1	2	89	3R	25829530	25829548	GAATTCGACGAAGAAGCAG		58	25823293	25829478	CCATGTGAAGTTTGTTTGGA		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG7816	FBgn0039714	FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921	2	6	6	80	3R	25690545	25690625	AGGGCGATAATCAAGATCC		58	25690483	25690501	TCGTGAAGATCAGTATGCC		59	NA	
Drosophila melanogaster	50	CG14531	FBgn0040619	FBtr0085312	1	1	1	69	3R	24632875	24632893	ACAGGACATGTTATGAACG		57	24632979	24632997	TATCCAGAATGAGCTTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	woc	FBgn0010328	FBtr0112857,FBtr0085178	1	2	2	81	3R	23083857	23083875	GTACTACGAGCGGTTTACC		59	23083730	23083813	GACAATGTATTGCGAATCGT		58	NA	
Drosophila melanogaster	50	CG5455	FBgn0039430	FBtr0085016,FBtr0085017,FBtr0085015	2	3	3	83	3R	22293798	22293874	CGATGATAGCGACTATGCT		59	22293920	22293939	AAAGTGGGAAAGCTGTACTC		59	NA	
Drosophila melanogaster	50	RpL34a	FBgn0039406	FBtr0084973	1	1	2	144	3R	21884950	21884968	ATTTCCGGAGAGGTTTGTG		59	21884597	21884615	CTTCACGTACTGGTACACC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Fur1	FBgn0004509	FBtr0089982	2	1	6	90	3R	21174051	21177846	GTGCTTAGAGTGCAATGAC		58	21173979	21173997	TTGGAACTTGTCCAATGGA		59	NA	
Drosophila melanogaster	50	CHKov1	FBgn0045761	FBtr0113351,FBtr0113352,FBtr0113350	1	3	5	60	3R	21149489	21149509	GTGTATATGGTCGACTTTCAG		58	21149449	21149467	AGTAGTACAAGTCCTGAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ela	FBgn0013949	FBtr0084708,FBtr0084709	3	2	2	61	3R	20692052	20692071	TGAACTATCATCGCTATCCG		59	20692095	20692113	GAAATGATGGTCCCAATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sec10	FBgn0027103	FBtr0084547	3	1	1	80	3R	19962227	19962245	AGACGAACATCATTGTCCA		58	19962286	19962365	AGTACTTGGGTGTATTACTCAC		59	NA	
Drosophila melanogaster	50	CG10694	FBgn0039147	FBtr0084542	3	1	1	60	3R	19933622	19933641	CTCAGGAGGTTGTTTCAGAG		59	19933664	19933682	TGATCACTTGTCTGTACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS19b	FBgn0039129	FBtr0084519	3	1	1	114	3R	19758878	19758897	CCTTCACCAAGGTCTATAGC		59	19758713	19758731	ATGTTAGCAGCTTCCAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6921	FBgn0038985	FBtr0084262,FBtr0084261	1	2	3	85	3R	18380435	18380453	TAAAGATTGTCGAGGAGCG		59	18380566	18380585	CATAGGTGAGCTCATTAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12499	FBgn0038968	FBtr0084295	1	1	1	60	3R	18269881	18269899	GAGACAGATTGAGCTTCCT		58	18269839	18269858	CAGGTTCTTGGTGATTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr93c	FBgn0045469	FBtr0084159	1	1	1	60	3R	17670501	17670522	GAACTGTACTCTGAAATATGCC		58	17670462	17670480	TAGCAAACAAGGATAGCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GABA-B-R2	FBgn0027575	FBtr0084168	3	1	2	176	3R	17597551	17597631	CACCACAGAAGTTACCGAG		59	17597336	17597354	TGCATCATAGTTGGAGCAG		59	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	1	22	22	84	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202454	17202549	TTCAGGAATACGATAGCGT		58	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0112915	1	11	12	80	3R	17033375	17036516	ATCTATCAGATCTGGAAGAGG		57	17036558	17036576	TGGGTATCAGATCATAGCA		57	NA	
Drosophila melanogaster	50	Atpalpha	FBgn0002921	FBtr0089510,FBtr0089513,FBtr0089509,FBtr0089511	3	4	8	136	3R	16792304	16792323	CGATTCTTTGCATCGATCTG		59	16792914	16798904	CGAAATCAACCTTGAGTTCAC		59	NA	
Drosophila melanogaster	50	Atpalpha	FBgn0002921	FBtr0089510,FBtr0089513,FBtr0089509,FBtr0089511	1	4	8	134	3R	16792914	16798904	GTGAACTCAAGGTTGATTTCG		59	16798998	16799018	CATCTTACGAATGCCAAACAG		59	NA	
Drosophila melanogaster	50	CG31191	FBgn0051191	FBtr0083984,FBtr0113399	3	2	2	90	3R	16738194	16738212	AACCTCATGAACAAGTACG		57	16738053	16738143	GGATGACTTCCTTAATCATCAG		58	NA	
Drosophila melanogaster	50	CG15695	FBgn0038832	FBtr0083967	3	1	1	62	3R	16669091	16669177	GATACAACAAGATGGGCGA		59	16669202	16669221	TGTTAAATCCCGTGAGAACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34119	FBgn0083955	FBtr0110822	2	1	1	135	3R	16225525	16225543	AATATCGAGTACCACGACG		58	16225408	16225426	GTATGCGGTCGTCATAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cic	FBgn0028386	FBtr0083872	3	1	2	144	3R	16122207	16124109	CCACAGATCTTAGAGCTGC		59	16124217	16124235	AACATCTTCTGACTGGCTG		59	NA	
Drosophila melanogaster	50	ATPsyn-d	FBgn0016120	FBtr0083728,FBtr0083727	2	2	2	92	3R	14921153	14921171	AATCCTCGATCAACTGGTC		59	14921227	14921245	CATAGATGTCCGACTTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083641,FBtr0083643,FBtr0083645	2	3	13	91	3R	14340833	14340851	GAACATCGAAACGGATGTG		59	14261499	14340778	GGTCAGTGTTGTACCTAGG		58	NA	
Drosophila melanogaster	50	CG7685	FBgn0038619	FBtr0083630	1	1	1	129	3R	14231128	14231147	GATCCCATCAAGATTGTCAG		58	14231302	14231320	AGTAGTTGTCGTTCAGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7675	FBgn0038610	FBtr0083582,FBtr0083583,FBtr0083581	1	3	3	114	3R	14204680	14204956	CAGTGAAGGATGAGATCGT		58	14204584	14204602	TCGGTCTTCACAATGTCAG		59	NA	
Drosophila melanogaster	50	Ssdp	FBgn0011481	FBtr0083612,FBtr0083611,FBtr0083613	3	3	3	77	3R	14020957	14020975	AAGATCAAGGAGAGCATGC		59	14020898	14020918	TTATGGCATAAAGTAGTCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7208	FBgn0038575	FBtr0083618,FBtr0083617	2	2	2	282	3R	14010550	14010568	GAAGAGCTCTATGCTTCTG		57	14010222	14010240	AAATATGGAAGCCATGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3534	FBgn0038463	FBtr0083370	1	1	1	94	3R	12824287	12824520	GTAATCAAATTCAGCTCGCC		59	12824577	12824595	TTGTAGCCAAGGTCTTCAG		59	NA	
Drosophila melanogaster	50	CG4699	FBgn0038364	FBtr0083175,FBtr0083176,FBtr0083177	3	3	3	111	3R	11622600	11623024	CTCTCGCTACCAATCACTC		59	11623098	11623117	TCTTCATCTCCAAATCGGTC		59	NA	
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089960,FBtr0089968	3	2	12	198	3R	11121251	11125836	TAAGAAATACGAAGAGGTGGC		59	11127363	11127381	GATTTGCGTCTCAAAGGTC		59	NA	
Drosophila melanogaster	50	Kif19A	FBgn0038205	FBtr0082912,FBtr0082911	1	2	2	80	3R	9939295	9939315	GCATATGATTATCTCCCACTG		58	9939173	9939253	CCTTCTGATTCAATGTCGT		57	NA	
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082805	3	1	8	87	3R	9488126	9488710	AATCATCCTCTCGTTATGGC		59	9488759	9491191	ATGTAATCCTTGAGATCGCG		59	NA	
Drosophila melanogaster	50	sqd	FBgn0086897	FBtr0082857	2	1	4	91	3R	9470139	9470160	GACTTATACTTGGAGGATATGC		57	9468920	9470087	ACAAACAGTTTCCATCAGC		58	NA	InUTR
Drosophila melanogaster	50	wntD	FBgn0038134	FBtr0082775	3	1	1	60	3R	9118822	9118840	CTTCATGGGTATTACGAGC		57	9118780	9118799	GTACTGGTAGTAGCTCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8031	FBgn0038110	FBtr0082719	1	1	1	80	3R	8835324	8835344	CTGGATATACGTACTGTGGAG		59	8835200	8835283	GTATGAAGATTCGCTTGACG		59	NA	
Drosophila melanogaster	50	Vha55	FBgn0005671	FBtr0082670	2	1	2	124	3R	8453265	8453283	TGCACTTTCAAGGTAGAGG		59	8451938	8453177	CAGTCTTGTAAGTCAAGCG		58	NA	InUTR
Drosophila melanogaster	50	lig3	FBgn0038035	FBtr0082600	1	1	1	80	3R	8224924	8225005	AGAGAAGCTTAGAACGCTC		59	8224862	8224880	CTCTGAGTATCGAGACAGC		58	NA	
Drosophila melanogaster	50	GstD9	FBgn0038020	FBtr0082608	2	1	1	60	3R	8192396	8192417	CTATACTGATTTATCTGGCCGA		59	8192357	8192375	GGATCCTTGGGATAAAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10014	FBgn0038000	FBtr0082559	3	1	1	130	3R	8049046	8049064	CTTCAGAGATTCTTCCGCA		59	8049245	8049263	TCATAGCCATCCTTTGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	dpr17	FBgn0051361	FBtr0082543,FBtr0082542	2	2	2	100	3R	7936142	7936160	AGATTAGCGATAGTGACGA		57	7936224	7936318	AATTAATGAGCCGATCGTG		57	NA	
Drosophila melanogaster	50	CG31116	FBgn0051116	FBtr0082527,FBtr0082526	2	2	5	130	3R	7628405	7629450	GGCGTTCTACTATATGTATGGT		59	7628048	7628314	CCAGCAGTTCCTTATTCCT		58	NA	
Drosophila melanogaster	50	CG10898	FBgn0037911	FBtr0082410	3	1	1	129	3R	7384370	7384388	CTTCTGATGATCGAGGAGG		58	7384552	7384571	CATTTAGACCAGTCTCTTCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17734	FBgn0037890	FBtr0082360,FBtr0082361	3	2	2	210	3R	7069520	7069538	CAGGAAAGCAAAGGAATCG		59	7068560	7068578	CTTGTCGAACAGGTACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS25	FBgn0086472	FBtr0082369,FBtr0082370	3	2	2	127	3R	7041512	7041531	AGAAGCTGTACAAGGAAGTG		59	7041336	7041422	CTTGATCAGACCCTTCTCG		59	NA	Nonspecific
Drosophila melanogaster	50	Ugt86Dc	FBgn0040257	FBtr0082337	3	1	1	60	3R	6981961	6981982	AGGTGATATCCAGTCAATATCG		59	6982003	6982021	CAATAAACAGCTCGTTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Best1	FBgn0040238	FBtr0082183,FBtr0114590	2	2	2	171	3R	5991953	5992985	CAAATTGCTGCTCAGATGG		59	5991452	5991473	GAGTTCTCTGTAACTATCACAG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG8312	FBgn0037720	FBtr0082076,FBtr0082075	1	2	2	62	3R	5449441	5449459	TCCTGCCCACTATTAACAG		58	5449485	5449503	GATCCTCGGCATTGTAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rel	FBgn0014018	FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338	2	4	4	60	3R	4870435	4870454	TGAAGAATGTGTATCCGGAG		59	4870394	4870414	TTGACCTTACATGGAATCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pif1A	FBgn0027540	FBtr0091714,FBtr0091715	1	2	2	98	3R	4612636	4616239	GATGTCAAGATAACCCAACTC		58	4612558	4612576	ACTGCTCTTCATTGTTGTG		58	NA	Nonspecific
Drosophila melanogaster	50	Or85d	FBgn0037594	FBtr0081872	2	1	1	95	3R	4379496	4379515	TTATTAAGAGGGCCCAACAG		59	4379634	4379652	TGTACGAGAGTTGCAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1162	FBgn0026564	FBtr0081669	2	1	1	70	3R	2580406	2580426	CATAAACTGTCCAAATCGAGC		59	2580356	2580374	TAATGCAATGAAAGCAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15177	FBgn0037461	FBtr0081700	1	1	1	113	3R	2454467	2454485	AAGAACACCGGAGTTATCG		59	2454322	2454390	AAATTCAGTCATGTCCGCT		59	NA	
Drosophila melanogaster	50	CG15580	FBgn0037398	FBtr0078622,FBtr0078621	2	2	2	93	3R	1881011	1881138	AATACCCGAATCCTATACGC		59	1880937	1880955	TGTAGTTATTCCGACGCAC		59	NA	
Drosophila melanogaster	50	RpL13A	FBgn0037351	FBtr0078705	1	1	1	131	3R	1450615	1450633	GTTGTTATTGATGGTCGCG		59	1450728	1450746	GTTCCTGTAGAAGTGTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rga	FBgn0017550	FBtr0078741,FBtr0078742	1	2	2	122	3R	1433498	1433519	GATAAGAGACAAACTAACAGCG		59	1433306	1433415	CGACTATGCAATTCAGCAG		58	NA	
Drosophila melanogaster	50	exba	FBgn0037346	FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745	1	7	7	82	3R	1423978	1423999	GGTTCTATTATTCGTAAAGGGC		58	1423651	1423935	AACCGTTGACTAACCAGAG		59	NA	
Drosophila melanogaster	50	CG33927	FBgn0053927	FBtr0091931	2	1	1	269	3R	516124	516142	TCAGTGTCGTTTAAAGGCA		59	515815	515833	CCCATTATATGCACTGGAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG32944	FBgn0052944	FBtr0110851,FBtr0078948	2	2	2	94	3R	233716	233789	CTGCAGAGGTTACTTTCCA		59	233640	233658	CTCTGGAAGTCAATGTTGC		58	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113343	3	1	15	193	3R	111913	120842	TTAAAGTTCACCGCTTCTG		57	120999	121298	GATGTTGTACTTATCGCGA		57	NA	Nonspecific
Drosophila melanogaster	50	Gel	FBgn0010225	FBtr0078971,FBtr0078968,FBtr0078973,FBtr0078972,FBtr0078969	3	5	5	136	3R	66120	66138	TCAATACGAGCAAGAGGAC		59	66237	66320	TAAAGTAAAGCTTTGCCGTG		59	NA	
Drosophila melanogaster	50	CG34031	FBgn0054031	FBtr0100086	1	1	1	60	3L	23178694	23178713	GGAAGAAACAGTTGACTTCG		59	23178733	23178754	GTAGGTATCCATAGTCCATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32350	FBgn0052350	FBtr0070046	2	1	1	60	3L	23142361	23142379	GATTGTTGCATCGAGAAGG		58	23142319	23142338	TACTGAAATCGTACCAATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41454	FBgn0084017	FBtr0111173	3	1	1	145	3L	23131362	23132879	ACATTCGTTGACTTTCCTC		57	23132987	23133006	AAACAGCGACGGATATAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6838	FBgn0037182	FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186	2	4	4	89	3L	22709293	22709406	GTCAGTAAGGATCCAAACC		57	22709222	22709240	ATTAAGCAGATTCACGCTG		58	NA	
Drosophila melanogaster	50	Trxr-2	FBgn0037170	FBtr0078514	1	1	1	64	3L	22544356	22544374	CAAAGGTCTCATCGAGGAC		59	22544401	22544420	CAATCTTGTCGTCATGAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7611	FBgn0037094	FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362	3	8	8	110	3L	21518808	21519093	GACCTTAAGGACCTAGAGC		58	21519167	21519185	ATTGCCATCATCCAAATGC		59	NA	
Drosophila melanogaster	50	CG7611	FBgn0037094	FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362	1	8	8	84	3L	21519967	21519985	TAAACAGCATAGCCTTTCG		57	21520031	21520298	CTATCAAAGTTGTACCCTCTG		57	NA	
Drosophila melanogaster	50	CG5047	FBgn0037008	FBtr0078215	1	1	1	60	3L	20513565	20513584	ATGTGAACAACTCGAGTACC		59	20513524	20513542	ATACTGTGCAGATCCACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5976	FBgn0036999	FBtr0078200,FBtr0078199	3	2	2	60	3L	20468719	20468738	CTATCCGATAAGCTACACCT		58	20468760	20468779	CCACAACTCGAGGTATAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32428	FBgn0052428	FBtr0078222	3	1	1	221	3L	20465903	20465921	AATGATGGCAATAACCTCG		57	20464208	20464227	CTGCGTTCCAATTATTTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eRF1	FBgn0036974	FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177	3	6	6	81	3L	20344765	20344786	TGGAGATTATCACGGATAAGTC		59	20344828	20345922	TTGTAGCGTAAGATACCGC		59	NA	
Drosophila melanogaster	50	rdgC	FBgn0004366	FBtr0074834,FBtr0074833,FBtr0074835	3	3	4	125	3L	20253973	20253993	GCAATCTTCATCCAGAAATGG		59	20254080	20254321	TTTGTATAGCTCAGCCTGG		59	NA	
Drosophila melanogaster	50	CG6951	FBgn0036959	FBtr0074828,FBtr0074829	3	2	2	80	3L	20237666	20238044	CTCATTATACAGGTGGGCA		58	20238088	20238106	CTTGGATGCACGATATGTG		58	NA	
Drosophila melanogaster	50	CG6933	FBgn0036952	FBtr0074855,FBtr0074854,FBtr0074853	2	3	3	61	3L	20211888	20211906	TGTACCCATAACCGATGTG		59	20211845	20211863	TTCTTGCAACCCTCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpn1	FBgn0028695	FBtr0074893	3	1	1	60	3L	19909526	19909545	GATACTTCTGTGGGATGTGG		59	19909565	19909586	GGTGGAGTACAAGTACTTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tey	FBgn0036899	FBtr0074960	1	1	1	85	3L	19649968	19649986	ATCACAGGATTACGATGCC		59	19647007	19649921	TATGCAGATGTCTCAAATCCC		59	NA	
Drosophila melanogaster	50	CG18233	FBgn0036795	FBtr0075103	1	1	1	100	3L	18599371	18599389	TTGAAAGGCTTTGCAACAG		59	18599520	18599538	TGTAATTGGCTATTGGCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp312a1	FBgn0036778	FBtr0075135	1	1	1	93	3L	18123737	18123755	CTGGAGGCGTGTATAAAGG		59	18123602	18123681	AGAAGTCATTGATTGTGCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	MED19	FBgn0036761	FBtr0075160	3	1	1	126	3L	17837958	17837977	TACCACATATGTCACACCTG		59	17837786	17837804	TTTCTCGTAAGTCTCCAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Eip74EF	FBgn0000567	FBtr0075202,FBtr0075203,FBtr0100411,FBtr0075204	3	4	4	247	3L	17558677	17558695	TCTGCTCCACATAAAGACG		59	17557952	17558466	GAAATGAACCTGTTGTGGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Nedd4	FBgn0036736	FBtr0075179,FBtr0075178	2	2	4	111	3L	17527653	17531772	TAACAGTGATAACGACTCTGG		59	17531914	17531932	GATTCTGACATACGGGTCG		59	NA	
Drosophila melanogaster	50	CG6652	FBgn0036687	FBtr0075292	2	1	2	153	3L	17014634	17014810	AGGAGTACACTATGCTGGA		59	17014499	17014517	TCGATTTGACTAGGTGGAG		58	NA	
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	3	8	8	172	3L	16956749	16956767	ACGTCAAGTACAAGGACTG		59	16956901	16956979	CAATAGACCCTTGTGAATCAC		58	NA	
Drosophila melanogaster	50	CG13025	FBgn0036660	FBtr0075346	2	1	1	60	3L	16771324	16771342	AACATTCTCTGCGAGTTCC		59	16771221	16771241	CAGGAGCTATGTGTATCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Abl	FBgn0000017	FBtr0112790	3	1	2	168	3L	16622299	16624488	ACATGAACTTAGAAGCCCTG		59	16622150	16622168	GTAGTCGAACTGTGACCAC		59	NA	
Drosophila melanogaster	50	fax	FBgn0014163	FBtr0100477,FBtr0100478,FBtr0075413,FBtr0075412	3	4	4	190	3L	16398660	16398678	ATGAAGGACAAGTGCTTCC		59	16398260	16398433	TTCTCGTTTGACTTGTCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	mib1	FBgn0036558	FBtr0075520	1	1	1	80	3L	16000079	16000097	TCAACAACTTCCAGATGGA		58	15999958	16000035	AGACAGGACACATAGTCTG		57	NA	
Drosophila melanogaster	50	CG17032	FBgn0036547	FBtr0075511	2	1	1	61	3L	15953272	15953290	CAGTGGTTACAACCAGGAG		59	15953314	15953333	CATTGTTGTAGTTGCTGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGAP71E	FBgn0036518	FBtr0075567,FBtr0075569,FBtr0075568	3	3	3	89	3L	15593707	15593796	TCAAGTTCAAGGTCTCTACG		59	15593848	15593866	AGTACTCATAGTTGTCGCG		59	NA	
Drosophila melanogaster	50	cp309	FBgn0086690	FBtr0099992	2	1	2	85	3L	15074253	15074443	ATGACTATAAGCCTGCAACC		59	15074187	15074205	AATAAGGGAGGTATTCGCG		59	NA	
Drosophila melanogaster	50	ome	FBgn0002997	FBtr0075688	1	1	2	90	3L	14729227	14737299	AGCGATCAGAATCTAATGCA		59	14737352	14737370	ATAGAGCAACCGCTATGAC		59	NA	
Drosophila melanogaster	50	fz	FBgn0001085	FBtr0075743	3	1	2	93	3L	14310429	14359857	AAGTTGAAGGTGACATCCT		58	14359914	14359932	TAAATGCAGAGTGGAAGGA		58	NA	Nonspecific
Drosophila melanogaster	50	CG32133	FBgn0052133	FBtr0075784	1	1	1	81	3L	14015210	14015289	CATCTGCTAACTGCTTGGA		59	14015147	14015165	AAGGATCGGATAAGTGTCG		58	NA	
Drosophila melanogaster	50	CG10171	FBgn0036353	FBtr0075865,FBtr0075864	3	2	2	224	3L	13379873	13379892	AGTGTCAACCTGATTTCCAG		59	13379606	13379624	GCTAGGCGATATGTAAGCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	ImpL1	FBgn0001256	FBtr0075843,FBtr0075842	1	2	2	85	3L	13376187	13376205	TACTATGTAAAGCGCACCT		58	13376254	13376272	ATGGGAATGGCCAAATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34242	FBgn0085271	FBtr0112436	2	1	1	116	3L	12527160	12527178	TAGCTAAATGGCAGTCCTG		59	12527257	12527276	TTCTCAGTGTTAACCATGGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	rols	FBgn0041096	FBtr0076055,FBtr0076057,FBtr0076053	2	3	5	168	3L	12006171	12006190	TTTAACCACAAGAATCTGCG		58	12005822	12006040	GAGTATGATCTCCCGACAG		58	NA	
Drosophila melanogaster	50	viaf	FBgn0036237	FBtr0076062	3	1	1	63	3L	11985636	11985654	CAGGATTATGTCAACGAGG		57	11985591	11985609	CATACAGGTGGAGTACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7257	FBgn0036224	FBtr0076040	2	1	1	60	3L	11936183	11936201	GACTTGATCGCAAATTGGA		58	11936225	11936243	TTAAGAATGTCCATACGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10361	FBgn0036208	FBtr0076084	1	1	1	120	3L	11793262	11793280	CAACTACTTAGGACTGGCG		59	11793099	11793117	CTTGTGTATATCCTGCGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG34240	FBgn0085269	FBtr0112434	3	1	1	60	3L	11222325	11222344	GAATATCCCGATGACTACGA		58	11222366	11222385	CGTAGTCAATATCCTCATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6199	FBgn0036147	FBtr0076187,FBtr0076188	1	2	2	80	3L	11195966	11196052	AGACTTGGAAGAGACAAACC		59	11195905	11195923	AGAAACTGGTCGAAGAAGG		59	NA	
Drosophila melanogaster	50	CG6327	FBgn0036115	FBtr0076244,FBtr0076243,FBtr0076246	1	3	4	80	3L	11032852	11033105	CAATCCAAGTTCATACGTTCG		59	11032792	11032810	AGAGATTACCAACGGAAGC		59	NA	
Drosophila melanogaster	50	CG32055	FBgn0052055	FBtr0076304	1	1	1	60	3L	10212024	10212044	TTTATCAAGGAACTCAGGCTC		59	10211984	10212004	CAAACATACGAAGATCCAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32054	FBgn0052054	FBtr0076314	1	1	1	84	3L	10087188	10087206	ATTGGTGGCATTATCGGAG		59	10087056	10087143	GAAACGAACTGAAGATCAAGAC		59	NA	
Drosophila melanogaster	50	CG8336	FBgn0036020	FBtr0076384,FBtr0076386,FBtr0076385	3	3	3	127	3L	9624224	9624296	CTCGACAAGTTCACAGGAG		59	9624387	9624405	TAGTATCGATTCGCCTTGC		59	NA	
Drosophila melanogaster	50	eIF-4E	FBgn0015218	FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487	1	7	7	92	3L	9393610	9393692	AGAACATTCGTCCCATGTG		59	9393536	9393554	TATCCAGATCGGTCTTGGA		59	NA	
Drosophila melanogaster	50	PGRP-LF	FBgn0035977	FBtr0076439	3	1	1	86	3L	9343139	9343553	GAACAAGAGGATGTTTGCA		58	9343603	9343621	GTTATAGCCAATGTCGACC		57	NA	
Drosophila melanogaster	50	bol	FBgn0011206	FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538	2	4	4	130	3L	9101077	9101096	TATACCCATGGATCAGTTCG		58	9100463	9100724	TGGTGGGTACATTCATTGG		59	NA	
Drosophila melanogaster	50	CG6416	FBgn0035917	FBtr0089568,FBtr0089561,FBtr0089563	2	3	8	87	3L	8620819	8627689	ATTGTGAATCAGCCCTACC		59	8627740	8627758	TCAAGTAGGACTCTGTCGT		59	NA	
Drosophila melanogaster	50	Cbl	FBgn0020224	FBtr0076614,FBtr0076615	1	2	2	189	3L	8420110	8420195	ACTATACTGTGAAATGGGCAG		59	8420404	8420422	CACAACGATTTGTTCGGTG		59	NA	
Drosophila melanogaster	50	Tsp66A	FBgn0035786	FBtr0076860	3	1	2	110	3L	7460752	7460831	CGCATTGTAATTTATGCCAC		58	7460902	7460922	CCATATTCGAAGTACATCTCC		57	NA	
Drosophila melanogaster	50	lark	FBgn0011640	FBtr0076842,FBtr0076843,FBtr0076841,FBtr0076844	3	4	5	100	3L	7333781	7333799	TACAGAGATCGCATGTACG		58	7333861	7333986	TAGTCATAGTCCCTAAAGCCA		59	NA	
Drosophila melanogaster	50	CG14821	FBgn0035719	FBtr0076895,FBtr0113150	2	2	2	96	3L	6939460	6939480	AGCTAAGCAATAAGGACATCC		59	6939537	6939609	GATATTTCCTGGCTTTGCAG		59	NA	InUTR
Drosophila melanogaster	50	Trn	FBgn0024921	FBtr0077002,FBtr0077000,FBtr0077001	3	3	3	118	3L	6187880	6187898	TGTCATCAGATGAGGACCA		59	6187977	6188081	CAGCATGTACTCAATAATCTGC		59	NA	
Drosophila melanogaster	50	CG10576	FBgn0035630	FBtr0077121,FBtr0077122	2	2	2	210	3L	5757776	5757794	TGACTACACGTTAAAGGCC		59	5756865	5757540	GAGGGAGTAGTTATTGGCG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Fit1	FBgn0035498	FBtr0073209,FBtr0073210	2	2	2	60	3L	4105141	4105159	GCGCTTCAAATACTTCACG		59	4105183	4105201	ATTGATCCTCACTTGGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1120	FBgn0035462	FBtr0073148	1	1	1	269	3L	3807923	3807944	GGATTTCAGTCAACTTATGCTG		59	3808230	3808248	TTCAGCGACATATTCTCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14968	FBgn0035431	FBtr0073087,FBtr0073090,FBtr0073089,FBtr0073088,FBtr0073086	3	5	5	153	3L	3299986	3300004	TTAAGTATACGCGTCGTCC		59	3299851	3299869	TAGCTCCAGTGATTGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mrtf	FBgn0052296	FBtr0072944	2	1	1	90	3L	2723385	2723470	CTATAGTGGTGAAGCAGGAG		59	2723314	2723332	TACAGATGATTGACCGGAC		58	NA	
Drosophila melanogaster	50	CG12026	FBgn0035289	FBtr0072836,FBtr0072837	2	2	2	200	3L	1890138	1890325	ACATTCTCGTTTCAGTTGG		57	1890655	1890673	GAAATCGTCCGAATTCCAG		58	NA	
Drosophila melanogaster	50	CG7967	FBgn0035251	FBtr0072809	3	1	1	81	3L	1652372	1652390	TACGCCTTGAAACTATTCC		57	1652242	1652260	AGTAGAAGGCCTTAACGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Psa	FBgn0035226	FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697	3	6	6	120	3L	1520660	1520678	CTACCGTGAGACCTTTGTG		59	1520761	1521150	CATAGTTACCAGATTGCCGA		59	NA	
Drosophila melanogaster	50	pUf68	FBgn0028577	FBtr0072710,FBtr0072707,FBtr0072709,FBtr0072708	1	4	4	154	3L	1498415	1498433	GATCCTCTACTGCAAGCTG		59	1498217	1498297	TAGATCGACCCACTCTCAG		59	NA	
Drosophila melanogaster	50	CG9134	FBgn0035199	FBtr0072659	1	1	3	153	3L	1262022	1269077	AAGTCGATAATGATTGCCC		57	1272984	1273002	TGGTATCGGCAATATTGTG		57	NA	
Drosophila melanogaster	50	CG9205	FBgn0035181	FBtr0072621	3	1	2	237	3L	1035448	1035564	CAATGTGATGAAGGGATGG		58	1035765	1035783	CCTCAGCTTTACCGTATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9205	FBgn0035181	FBtr0072621	1	1	2	237	3L	1035448	1035564	CAATGTGATGAAGGGATGG		58	1035765	1035783	CCTCAGCTTTACCGTATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34057	FBgn0054057	FBtr0100835	2	1	2	82	3L	897935	897953	TCTAAACGAGTACGACTGG		58	898054	898072	AAGGGTATAGAAACAGGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13876	FBgn0035109	FBtr0072484	2	1	1	60	3L	206545	206566	GGAGCATAAATCAAGCATAGAG		58	206585	206605	CTGAATATGAAGTGAGCTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pk61C	FBgn0020386	FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466	2	8	8	87	3L	142804	142822	ATATCGCGACTGCTTAGTG		59	142873	142954	GGTCGAAAGAGTTCTTTGC		59	NA	
Drosophila melanogaster	50	Tkr	FBgn0003715	FBtr0072458,FBtr0100126,FBtr0072457,FBtr0072456	2	4	4	179	2R	20981955	20981973	GGTAAGGAGTTTGGAAAGG		57	20979236	20981812	GAGACCAAACATATGTGGC		58	NA	
Drosophila melanogaster	50	ST6Gal	FBgn0035050	FBtr0072441,FBtr0072442	3	2	2	254	2R	20579631	20579649	CAACTACGAGCTGTACAGG		59	20579225	20579306	GCGGAATTCATCTCTTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3825	FBgn0034948	FBtr0072204	1	1	1	60	2R	19864356	19864374	CCTTCCTCTTTGTTCTCCG		59	19864314	19864334	CGATATTGCTCGTAGATAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5594	FBgn0025698	FBtr0072137,FBtr0072139	1	2	4	90	2R	19811537	19811555	GTAGACCACCATTATGACG		57	19811609	19811948	TTTGAGAATCGTGATGCTG		58	NA	
Drosophila melanogaster	50	TM4SF	FBgn0020372	FBtr0100255,FBtr0072130	2	2	2	140	2R	19767863	19767957	ATAGCCATATTCCAGAGCC		58	19768061	19768079	CTTGTCCTGTATGGTCAGG		59	NA	InUTR
Drosophila melanogaster	50	CG5539	FBgn0034907	FBtr0072123	3	1	1	60	2R	19692532	19692552	CCTATAAGACTCTGAACAGCG		59	19692574	19692592	ACTATCCAGTATTTGGCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alphaPS5	FBgn0034880	FBtr0072063	3	1	1	83	2R	19447451	19447472	CCATTTGGTACATCATTCTGTC		59	19447516	19447586	AGAACCGAAGCTTGTAGAG		59	NA	
Drosophila melanogaster	50	CG3906	FBgn0034871	FBtr0072121	1	1	1	67	2R	19399611	19399629	AATCAGAGGAATGGTGTCC		58	19399562	19399580	GTGATCGGTTCTATTCGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6018	FBgn0034736	FBtr0071835	3	1	1	61	2R	18438971	18438989	GTCCTACTTTGACGATCCC		59	18439014	18439032	TCAGAATGTGAAGGCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4610	FBgn0034735	FBtr0071834	2	1	1	60	2R	18381051	18381069	GAACTGAGGGCTACATAGG		58	18381093	18381111	GGTTCATTTGTGCCTAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4021	FBgn0034659	FBtr0071716	1	1	1	80	2R	17662011	17662100	GAGTACAGCATACAACGTC		57	17662144	17662162	CACAGGTTTCATGTCAGTC		58	NA	
Drosophila melanogaster	50	CG9865	FBgn0034649	FBtr0071680	2	1	2	167	2R	17557181	17557260	AAGAATCACTACCAGGAGG		57	17556976	17557050	TTATTTGTTCGACTTGCCG		58	NA	InUTR
Drosophila melanogaster	50	CG4266	FBgn0034598	FBtr0071629,FBtr0113100	1	2	2	80	2R	17054332	17054406	AACGTAATGAAGGGAAATGC		58	17054271	17054289	CTTGTTAAGGTCCATGCTG		58	NA	
Drosophila melanogaster	50	CG3221	FBgn0034569	FBtr0071550	2	1	1	69	2R	16880287	16880305	TGCTGTTCAGGATCAACTG		59	16880177	16880195	GGAATCATAGACAAACGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11136	FBgn0034540	FBtr0086233	3	1	1	95	2R	16547203	16547289	CTAATAGATAACTCACCGATCC		57	16547345	16547363	TATTTCCAGGGAGGAACTG		58	NA	
Drosophila melanogaster	50	betaTub56D	FBgn0003887	FBtr0086536,FBtr0086538,FBtr0086539,FBtr0086537	3	4	4	68	2R	15335672	15335691	TCTCTACGATATCTGCTTCC		58	15335623	15335641	ACAAGATGGTTCAGGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30127	FBgn0050127	FBtr0086556	1	1	1	100	2R	15216060	15216078	GACCGATGCACAATATGAC		58	15215764	15215782	AGTGGACGTGTTAATGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ena	FBgn0000578	FBtr0086583,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582	3	5	6	115	2R	15048910	15048988	CCATTCTCAAGGTCAATGG		58	15049064	15049085	GTTCTTGACTTTCTGAATCTCC		58	NA	
Drosophila melanogaster	50	CG15083	FBgn0034399	FBtr0086618	3	1	1	70	2R	14724059	14724078	CTGCTCGTTTACATCATCAC		59	14724186	14724205	TGGAGGTAGAAGGAGTACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33724	FBgn0053724	FBtr0091722	1	1	1	60	2R	14528063	14528082	TCAATCGCTACTACATTTCC		57	14528103	14528123	GTAGTGGGTAAATTCGATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED9	FBgn0034311	FBtr0086747	2	1	2	105	2R	14054995	14055015	GATTCTGCCGATAATCTACGA		59	14055216	14055286	TTCAAAGATCTTGTGGTTGC		58	NA	
Drosophila melanogaster	50	Bc	FBgn0000165	FBtr0086819	3	1	1	85	2R	13776212	13776307	GGATACGTTGAAGATTCTTCTG		58	13776148	13776166	GATGCCTCAATCATGTTGC		59	NA	
Drosophila melanogaster	50	CG30325	FBgn0050325	FBtr0086821	2	1	1	60	2R	13766571	13766592	GGTACATAGTAAGCAATCTTCC		58	13766532	13766551	TGGATGGAATGCTAATATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k01209	FBgn0022029	FBtr0086914,FBtr0086912,FBtr0086913,FBtr0086915	3	4	4	96	2R	13311459	13311541	TTCGTCATAGGAATCTGCG		59	13311601	13311619	ACAACAGTGTTACCCATGG		59	NA	
Drosophila melanogaster	50	CG30460	FBgn0050460	FBtr0087011,FBtr0087009,FBtr0087010,FBtr0113378	2	4	5	108	2R	12959348	12959484	AATCTGAAGACCAAGAGATCC		59	12959260	12959278	AATGGGACATCAGGTTTGG		59	NA	
Drosophila melanogaster	50	CG6429	FBgn0046999	FBtr0087044	2	1	1	60	2R	12760947	12760967	TATATGGTGAAGTACGGACAG		58	12760987	12761007	CATAATCGTAACAGTCCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	unc-104	FBgn0034155	FBtr0087079	1	1	4	93	2R	12645901	12646139	GATACCTTCTAGGCAACGT		58	12645826	12645845	GCTCTCCACATTATAGTCCG		59	NA	
Drosophila melanogaster	50	CG34458	FBgn0085487	FBtr0112764	3	1	1	68	2R	12559863	12559881	CAGTTCATCATACATCCGC		58	12559913	12559931	GCTCAACTTAATCAGCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30098	FBgn0050098	FBtr0087168	2	1	1	115	2R	12242539	12242558	GATAACAGATTCGCATGTGG		59	12242324	12242342	GACGAATCGTATTCACCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33461	FBgn0053461	FBtr0089860	2	1	1	89	2R	11583433	11583451	AGGTTATACGATCCCAAGG		58	11583501	11583584	GATGGGTTGGATATGATATGTG		58	NA	
Drosophila melanogaster	50	CG12960	FBgn0034023	FBtr0087327	2	1	1	60	2R	11387595	11387613	CTTCTACTCTTGTCGCCTC		59	11387637	11387655	GTCCTTGAAGAAGTGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp50d	FBgn0050074	FBtr0087554	2	1	1	170	2R	10260852	10260929	GTCCACATATCACCTTGCA		59	10261063	10261081	CTTCTCCTGATTACCGCAG		59	NA	
Drosophila melanogaster	50	Ih	FBgn0028428	FBtr0100370,FBtr0100369,FBtr0100371	1	3	4	101	2R	10179879	10184219	AGGTCTATTTCCTCAATATGGC		59	10184281	10184299	CTAAGAACTGCAAGCAACC		59	NA	
Drosophila melanogaster	50	AGO1	FBgn0026611	FBtr0087613,FBtr0087612,FBtr0087614	3	3	3	103	2R	9835755	9835773	TATCAGCTATGCCATACGT		57	9835604	9835688	ACCAGATGATATCTGGCAC		58	NA	
Drosophila melanogaster	50	Spt-I	FBgn0086532	FBtr0087731,FBtr0087729,FBtr0087730	2	3	3	97	2R	9056947	9057022	TATCTTTGTGGATGAGGCTG		59	9057082	9057100	GATCCTCAACGTCATTGTG		58	NA	
Drosophila melanogaster	50	CG13171	FBgn0033701	FBtr0087995	2	1	1	73	2R	8101580	8101598	ATCGTCAGCTACAAGTCAG		59	8101635	8101653	ATTAGGTTGAAGGTACGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8860	FBgn0033691	FBtr0088011	3	1	1	171	2R	8067275	8067293	CAAGGTTGTCAAATTCGCC		59	8067122	8067141	AATGTGAATCAGCTTGACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13190	FBgn0033662	FBtr0088034	1	1	1	128	2R	7774236	7774255	CCAGCACAATCAATCTTCTG		59	7774346	7774433	GACCCATTCAATGTTGTGC		59	NA	
Drosophila melanogaster	50	CG9067	FBgn0033605	FBtr0088182	2	1	1	81	2R	7166602	7166620	ATCTCCACTTGCTCTACAC		58	7166475	7166559	CGATCGAACTTCTTTGAAGTC		59	NA	
Drosophila melanogaster	50	shn	FBgn0003396	FBtr0088099,FBtr0088100,FBtr0088101,FBtr0088098	2	4	4	102	2R	7098298	7098383	TGGCAAGCAAGTAAATGTG		58	7098446	7098467	CTTCTTCTGCAACAATATCTCC		59	NA	
Drosophila melanogaster	50	Or46a	FBgn0026388	FBtr0088330	2	1	2	81	2R	6028117	6028137	GAGGATTAGGACACTTAATCC		57	6029494	6029512	GAAGTAGCTGTAGGAGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33757	FBgn0053757	FBtr0091758	3	1	1	77	2R	5342048	5342067	AAACCTTACATCCCAATGAC		57	5341937	5341955	AAATTCGAGGTCGGTACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13954	FBgn0033405	FBtr0113059	3	1	1	86	2R	5257806	5257824	TTTGTTACTGCTCATGTGC		58	5257636	5257756	TAAATGGCTAACTGGACCA		58	NA	
Drosophila melanogaster	50	CG13741	FBgn0033374	FBtr0088632	2	1	1	82	2R	4980800	4980976	GACATCTTCAAGAACATCGAC		59	4980738	4980756	CTTCCTCCTTCACGTTCAG		59	NA	
Drosophila melanogaster	50	CG2127	FBgn0033286	FBtr0088766,FBtr0088765	1	2	2	153	2R	4257181	4257199	ATTGCGATCAGGTATCGAC		59	4257046	4257064	ATGGACCTCATCTTTGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111084	1	1	60	156	2R	3249225	3249243	AAGGACGATTGGTCATCAC		59	3236472	3241080	TTGTACCATCTAAAGGCGG		59	NA	
Drosophila melanogaster	50	Tsp42Er	FBgn0033139	FBtr0089036	3	1	1	87	2R	2953003	2953192	GAGTACCAGACACAGTACC		58	2953241	2953261	CATAACAGCTACTTGGAACAG		58	NA	
Drosophila melanogaster	50	Tsp42Eb	FBgn0042086	FBtr0086177,FBtr0086176	2	2	2	67	2R	2887137	2887155	CAATACGGACCTGATTCGA		59	2887186	2887204	ACATGATGAAGATGCCCAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eb1	FBgn0027066	FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130	1	4	5	116	2R	2640386	2640404	AATTCAGTGCCAGTAAAGC		58	2640481	2641693	GGGTATAATCTTATCCACAGAC		57	NA	
Drosophila melanogaster	50	CG9422	FBgn0033092	FBtr0086120,FBtr0086121	1	2	2	99	2R	2579672	2579690	TAGTCACACGCCAAATACC		59	2579808	2579827	AAATCAGTGGACGTATTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	debcl	FBgn0029131	FBtr0086108	3	1	1	254	2R	2539505	2539524	GTGTGGTCAGTACATCAGAG		59	2539796	2539814	ACTAGGTTGAGCAACATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17510	FBgn0039969	FBtr0086073,FBtr0086074	2	2	2	100	2R	1491755	1491773	AAATGATCAAGTTCGCTCC		58	1491442	1491460	CAAGTACTAAAGCTGCTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG30438	FBgn0050438	FBtr0086068,FBtr0086067,FBtr0086069,FBtr0086070	3	4	4	84	2R	1436213	1436231	TACTGGACCGAATATGTGC		59	1436278	1436349	AGTAGTATTGCCACCATGTC		59	NA	
Drosophila melanogaster	50	CG17683	FBgn0040002	FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300	2	4	5	80	2R	19470	19547	GTGTAATCACTTCAGTTGAGG		58	19586	19607	CTAAATCAAGGAGATCGTACTG		58	NA	
Drosophila melanogaster	50	RpL5	FBgn0064225	FBtr0111129,FBtr0111128,FBtr0111131,FBtr0111130,FBtr0111132	1	5	5	99	2L	22428912	22428930	GTACAGATCGCCTATGCTC		59	22428771	22428849	AGTTGGTCAATCCAACCTG		59	NA	
Drosophila melanogaster	50	CG1832	FBgn0032979	FBtr0085964,FBtr0100407	1	2	2	129	2L	22168219	22168237	ATACAATTACGCCCTGGTC		59	22168055	22168126	GGATATGGTGTTAGCTGCA		59	NA	
Drosophila melanogaster	50	His2A:CG33826	FBgn0053826	FBtr0091830	1	1	1	60	2L	21473422	21473441	GAATTATTCCGCGTCATCTG		59	21473464	21473482	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8671	FBgn0032938	FBtr0081484	2	1	3	159	2L	21275797	21281140	GACATGCTAGGAATCCCAG		59	21281263	21281281	AATGAGTCTGGATTGACCC		58	NA	
Drosophila melanogaster	50	Mtp	FBgn0032904	FBtr0081439	2	1	1	89	2L	20919382	20919458	CTTCTCAAACAAACCAACG		57	20919311	20919329	TTTGTGGGAGAGTGTAGAG		58	NA	Nonspecific
Drosophila melanogaster	50	sick	FBgn0085372	FBtr0112547	2	1	3	108	2L	19929343	19950416	CTGTCAACCAATGTAAGTTCAC		59	19950483	19950503	GCTACCCAGATAAATATGCCA		59	NA	
Drosophila melanogaster	50	l(2)37Cd	FBgn0086445	FBtr0081156	1	1	1	108	2L	19127557	19127575	CTATCCATAACCGTGAGGC		59	19127647	19127722	CACAAAGCGTTTCAAAGGT		59	NA	
Drosophila melanogaster	50	CG10621	FBgn0032726	FBtr0081191	3	1	1	101	2L	18953228	18953246	GCTGATAAAGAACACGGTC		58	18952985	18953163	ATCAAAGGGTATCCCTCCT		59	NA	
Drosophila melanogaster	50	CG10602	FBgn0032721	FBtr0089317	2	1	4	104	2L	18859028	18859046	CATTTACGATTGCACCTGG		59	18857394	18858961	CGAGTAGAGATCATTGGGTG		59	NA	
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0080978,FBtr0080977	2	2	6	144	2L	17394476	17398601	CAATTCGGCTTATACAGATCTC		58	17398705	17398861	ATAATCATAAGATGCGCGAC		58	NA	
Drosophila melanogaster	50	beat-IIIc	FBgn0032629	FBtr0080971,FBtr0080972	2	2	2	90	2L	17191092	17193535	GATTGTTGCGTATCTTCCG		58	17191020	17191040	GCAATTAACCCGAACATAGTC		59	NA	
Drosophila melanogaster	50	Ca-alpha1D	FBgn0001991	FBtr0090006,FBtr0090004,FBtr0090005	1	3	4	81	2L	16186144	16189035	TAACAATGTCTACGCACCC		59	16189080	16189098	CTGATCGTAGGGACTAGCT		59	NA	
Drosophila melanogaster	50	CG4891	FBgn0028520	FBtr0080815	1	1	1	60	2L	16095417	16095436	CTGGACAATATTCGGAACTC		58	16095458	16095477	TTCCGTATATGTTATCCGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	UK114	FBgn0086691	FBtr0080746	1	1	1	128	2L	15274713	15274731	CTGGAGGCTGTTCTAAAGG		59	15274374	15274623	GAAATCCTTATTGAACACCCG		59	NA	
Drosophila melanogaster	50	stc	FBgn0001978	FBtr0080706,FBtr0080705	3	2	2	139	2L	15117479	15117559	CCATAAGGATAGGTGCTGG		59	15117662	15117680	TCTCTGTATACCACACGGA		59	NA	InUTR
Drosophila melanogaster	50	CG4218	FBgn0028881	FBtr0080662	1	1	1	110	2L	14547914	14547932	TGGATAAGAAGGCAGAGGT		59	14547751	14547769	GAACGCGTATGATCAACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33643	FBgn0053643	FBtr0091620	2	1	1	60	2L	13531107	13531126	ATTCTATATTGCGTGGACTC		57	13531149	13531167	TGCTGATATGATCAACGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vir-1	FBgn0043841	FBtr0080391,FBtr0080390,FBtr0080389	3	3	4	106	2L	12407726	12409466	CTCCTTCGATGATCTCTTCC		59	12407639	12407657	TAGAATCATCAGAGTCGCC		58	NA	
Drosophila melanogaster	50	bru-2	FBgn0043904	FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351	1	4	4	129	2L	12385726	12389193	ATTGGAGCTATAAAGGCCC		59	12389286	12389304	CACAGAATGCGTGAATCTG		59	NA	
Drosophila melanogaster	50	CG12264	FBgn0032393	FBtr0080290	1	1	1	60	2L	12000816	12000834	TCATCAGGAATGGTGATGC		59	12000857	12000876	TAGGCAAACGACAAATTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL9	FBgn0015756	FBtr0080163,FBtr0080164	3	2	2	104	2L	11003234	11003525	AGAACATGATCAAGGGAGTC		59	11003149	11003167	CAATGACCGTGTTGTTCTC		59	NA	
Drosophila melanogaster	50	CG31711	FBgn0051711	FBtr0079880	3	1	1	110	2L	9926998	9927075	CTCTTCCAGGTCCTAACTG		58	9927148	9927167	AGCTATCTTGATGAGATCCG		58	NA	
Drosophila melanogaster	50	CG9520	FBgn0032078	FBtr0079790,FBtr0079788,FBtr0079789	1	3	3	128	2L	8945116	8945369	TACTCAATGAAGGTCGCTC		59	8945006	8945026	CATCGTATGGCATGAATTCAC		59	NA	
Drosophila melanogaster	50	CG7781	FBgn0032021	FBtr0079609	2	1	1	60	2L	8322791	8322809	AGATTACGCAGATCATCGA		58	8322678	8322696	CTAATCACACGGCTATCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079620,FBtr0079621	3	2	4	91	2L	8245213	8252236	AGATACCAGCTCCTAATGTC		58	8245141	8245159	CGTAATCGTATAAGCCGGA		59	NA	
Drosophila melanogaster	50	CG5181	FBgn0031909	FBtr0079467	2	1	1	60	2L	7409418	7409436	TTGTCAGACTGACAAAGGG		59	7409376	7409394	CCGGAATAAAGGGTCAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wg	FBgn0004009	FBtr0079432	1	1	2	79	2L	7309584	7309602	GACGAGAAACTTCTCGAGG		59	7312846	7312864	CGTAAATGAAGCTCGTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10158	FBgn0031871	FBtr0079366	1	1	1	60	2L	6944784	6944802	CATGGTGAATCGCATTCAG		59	6944742	6944762	GCGATTCTCTTTGAGTATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	xl6	FBgn0028554	FBtr0079368	3	1	1	64	2L	6919905	6919923	ATAGAAAGGTGTACGTGGG		58	6919859	6919878	AAATACATACTCCAGGTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11321	FBgn0031857	FBtr0079385	2	1	2	85	2L	6767009	6767271	TCTTCTGCACAAAGAGTCC		59	6766942	6766960	CCTTCTTGAGTACCTGCTC		59	NA	
Drosophila melanogaster	50	CG31636	FBgn0051636	FBtr0079324	2	1	1	110	2L	6656928	6657015	AATCAAGAGTCGGATCTCG		58	6656836	6656855	ATATCCTGCAGATTACCACC		58	NA	
Drosophila melanogaster	50	CG16947	FBgn0031816	FBtr0079271	3	1	1	82	2L	6460475	6460569	GTGAGATTTGGTAAGTACACCT		59	6460414	6460432	CCACATCCATGACAATGGT		59	NA	
Drosophila melanogaster	50	CG13981	FBgn0031807	FBtr0079279	3	1	1	169	2L	6379274	6379292	CTCTACGTGTAGTGTCGAG		58	6379123	6379141	AATCACCGAATTTGTGGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9147	FBgn0031774	FBtr0079190,FBtr0079189	1	2	2	144	2L	6067221	6067292	GGTACTTGAGAAGCTGGTG		59	6067399	6067418	CTTCTCCAGACGGTATTGAC		59	NA	
Drosophila melanogaster	50	Cyp4ac1	FBgn0031693	FBtr0079066	1	1	1	91	2L	5264789	5264867	TATATGCGAAACTGCTCTGG		59	5264921	5264939	TTAGAACTTCCTCGATGGC		59	NA	
Drosophila melanogaster	50	qtc	FBgn0028572	FBtr0100263,FBtr0100259	3	2	7	99	2L	5068386	5070107	AACATACGCACCATTTATCG		58	5070169	5070187	AGAAGATAGCGCTCTTGAG		58	NA	
Drosophila melanogaster	50	Jon25Bi	FBgn0020906	FBtr0079054,FBtr0100432	1	2	2	60	2L	4954701	4954719	GCACATGGTTAACAAGGTG		59	4954659	4954678	GTTGTCGTACATGTTGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL40	FBgn0003941	FBtr0077470	3	1	1	64	2L	4228202	4228220	AACATTCAGAAGGAGTCCA		58	4228248	4228266	GAGGGCTCAATGATACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cutlet	FBgn0015376	FBtr0077541	3	1	1	114	2L	3708098	3708116	AAGAAGACATCAGGAGCTG		58	3707567	3708020	AGTCCTTAGTTAGCTGCTG		58	NA	
Drosophila melanogaster	50	CG16712	FBgn0031561	FBtr0077546	3	1	1	73	2L	3696383	3696401	CAGTTATCATCCCGAAACC		57	3696328	3696346	CAAATCGGTTCTCATTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	for	FBgn0000721	FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305	3	4	10	181	2L	3626210	3634252	TTATGTCATGGAAGATGGACG		59	3626049	3626067	TGATGGTCTGAAAGCACTG		59	NA	
Drosophila melanogaster	50	CG8837	FBgn0031520	FBtr0077583	1	1	1	163	2L	3322424	3322442	TATTCTGCTGGCCATTCAG		59	3322746	3322825	CATTGAATGCCTCTATCATGC		59	NA	
Drosophila melanogaster	50	CG9663	FBgn0031516	FBtr0077604	1	1	1	80	2L	3301170	3301191	CCATCAAGAAGATCAACATTGG		59	3297553	3301129	CATCCTTGGTTTCCCTCTG		59	NA	
Drosophila melanogaster	50	CG3332	FBgn0031514	FBtr0077608,FBtr0077609	1	2	2	82	2L	3276462	3276540	GATAACGGGCATGATCCTC		59	3276398	3276417	GATTGTCCAGATCCATCGAG		59	NA	
Drosophila melanogaster	50	oaf	FBgn0011818	FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780	2	4	4	104	2L	2495396	2495415	GTATTACCTCCAACATTGGC		58	2495482	2495582	GGATTTGAACCTCATTGCG		59	NA	
Drosophila melanogaster	50	Rab5	FBgn0014010	FBtr0077793,FBtr0077798,FBtr0077796,FBtr0077794,FBtr0077797,FBtr0077795	3	6	6	203	2L	2360797	2360985	AACTGCATAAACAAGCCTC		58	2360549	2360569	CGTTCTTAGGTAGTTTCTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Or22c	FBgn0026396	FBtr0077826	1	1	1	87	2L	2055778	2057043	ATCATGTTGAACACGTCGT		59	2057093	2057112	CGAAGCAGTAGAGGAATAGC		59	NA	
Drosophila melanogaster	50	Got2	FBgn0001125	FBtr0077868,FBtr0077867	1	2	3	149	2L	1986003	1986021	CAAGAAGATCAACTTGGGC		58	1985810	1985828	TTGTAGAACTCGGGAATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15356	FBgn0031377	FBtr0077869	2	1	1	268	2L	1976802	1976917	CAATAGCATAATTGAGCTGC		57	1976553	1976571	TAATTGCTGATTGGACAGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15357	FBgn0040719	FBtr0077871	1	1	1	75	2L	1945393	1945411	ATATGATCCATGTGGCCAG		59	1945336	1945354	TAGAACAAAGTGGATCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4629	FBgn0031299	FBtr0077990,FBtr0077992,FBtr0077991	2	3	3	133	2L	1085630	1085648	TTTACCTGGTCACTGAGTG		58	1085301	1085535	CAGACTGTGCATATGTTTGAC		59	NA	
Drosophila melanogaster	50	KH1	FBgn0086130	FBtr0078009	3	1	1	60	2L	812368	812386	CTTAGCAAACTGGTGACCA		59	812409	812428	CTAGAACCAGATGACGAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089400,FBtr0089398,FBtr0089405,FBtr0089406,FBtr0089399,FBtr0089407,FBtr0089403,FBtr0089409,FBtr0089402,FBtr0089408,FBtr0089401,FBtr0089397,FBtr0089404	1	13	13	101	X	20100288	20100306	ATATCCACGCACTACAACC		59	20100138	20100223	CTTTGTGTCCTTTAGCGAC		58	NA	Nonspecific
Drosophila melanogaster	50	CG14207	FBgn0031037	FBtr0074733,FBtr0074734	1	2	2	297	X	19499545	19499565	GGCTAACAAGAGGAATATCCC		59	19504495	19504578	TTTGTTATCGCCCTCATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4678	FBgn0030778	FBtr0074320,FBtr0074319,FBtr0100450	3	3	3	84	X	16603627	16603646	GATTACGCTGGAGATATCCT		58	16603691	16603777	GATAAGTGACAGCTGATTGTC		58	NA	
Drosophila melanogaster	50	CG32584	FBgn0052584	FBtr0074069,FBtr0074070	2	2	2	67	X	15469568	15469644	AAGTCGTGTCCAATTCCAG		59	15469519	15469537	CTCGATGGTGTTGCTAGAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2533	FBgn0030319	FBtr0073537	2	1	1	60	X	11497543	11497562	AGTCATTCAACTGGAAGAGC		59	11497502	11497520	CTTCTGATCCGTTAGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dlic2	FBgn0030276	FBtr0073444,FBtr0073441,FBtr0073443,FBtr0073442	1	4	4	166	X	11055274	11055358	GTACAGAGACGACATGACG		59	11055488	11055506	AATGGTTTAGCTGCTCCAG		59	NA	
Drosophila melanogaster	50	ct	FBgn0004198	FBtr0071069	1	1	3	124	X	7526283	7526301	GTTATATCGGCTACCGACG		59	7526812	7539814	CGGAATTCTGAATGAGAGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	ogre	FBgn0004646	FBtr0071037,FBtr0071036	2	2	2	142	X	6868684	6868780	GGACTGATAGTGTTCCGTG		59	6868560	6868578	TAGATTAGCCACCAGTCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Spat	FBgn0014031	FBtr0070913	1	1	1	64	X	6424462	6424549	AGTACAGCGTTGAGATTAGC		59	6424576	6424594	TAAACCGATACGGAAGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ec	FBgn0000542	FBtr0112801,FBtr0070606,FBtr0112802	3	3	3	61	X	3749408	3749426	AGATTGCAGAGGAGATTCG		59	3749451	3749469	ATTCAGTGTCTGCTGTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-3385a	FBgn0082962	FBtr0113577	3	1	1	62	3R	1422157	1422176	AGGGTTCATGTACAGTATGC		59	1422114	1422132	ACGGCATTGGGTTATATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11333	FBgn0039850	FBtr0085789	3	1	1	266	3R	27289195	27289270	ACTACTAAACTGCTGGCAG		59	27289561	27289580	ATCATTTACCAGGTCGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12883	FBgn0039538	FBtr0085216	3	1	1	65	3R	23505142	23505230	GTTCGAGCAAGAACAAGAC		59	23505259	23505277	CGACAGTCATGTTACTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31076	FBgn0051076	FBtr0085079	3	1	1	61	3R	22814874	22814950	ATAGCAACTACATTGCACAG		58	22814832	22814850	TTGAACCAGTCCATGATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	tst	FBgn0039117	FBtr0084462	1	1	1	178	3R	19594954	19595038	GAAATAAGCCCTTTGCTGAG		59	19594795	19594813	AATATCGCGCTTGATAGCA		59	NA	
Drosophila melanogaster	50	RpS3	FBgn0002622	FBtr0084410	1	1	1	65	3R	19185337	19185355	CAACGACTATGTCGAGACC		59	19185384	19185402	ACCTTGATACCAAGCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6660	FBgn0039030	FBtr0084338	2	1	1	70	3R	18749518	18749536	TGAAGACATTGTACGCCTC		59	18749570	18749650	TATGAATACCGTGTCGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gclm	FBgn0046114	FBtr0084336	3	1	1	96	3R	18511814	18511832	GAGATAAGTATCGGTGCCA		58	18511736	18511754	GCGTCACACTAAGTATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6439	FBgn0038922	FBtr0084190	1	1	1	73	3R	17843642	17843717	CAAAGTGTGCATTAAGGGC		59	17843587	17843605	TCATGTTAAGGGTCTGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	cic	FBgn0028386	FBtr0112787,FBtr0083872	1	2	2	99	3R	16124247	16124328	CTCATCCGTATACGTTGCT		59	16124391	16124409	CTCAAGGTGTAACCTCCTG		59	NA	
Drosophila melanogaster	50	CG17751	FBgn0038717	FBtr0083778	3	1	1	261	3R	15433424	15433513	GAGTATCACCACAGAGCTG		59	15433738	15433756	TAGGACATACTGGGTGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7217	FBgn0038570	FBtr0100620,FBtr0100619	2	2	2	60	3R	13992107	13992126	AAATCATTTCACTGCGATCC		58	13991872	13992084	GAGTCTCCTACTTTCACCA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083351,FBtr0083347	3	2	6	82	3R	12550978	12550996	GGCATATCAACAGACATGG		58	12484783	12536289	AGACCATTTGTACCTAGCC		58	NA	
Drosophila melanogaster	50	CG31327	FBgn0051327	FBtr0082904	3	1	1	60	3R	9983634	9983658	GAAGAAAGGGATACCATCTATAGAG		59	9983598	9983616	CCTCCAATAGGGACTATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Past1	FBgn0016693	FBtr0082655,FBtr0082654	3	2	2	79	3R	8529519	8529600	AAGATATCCGGTGCAACTG		59	8529642	8529661	AGTTTCCAGATCTTGCTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6830	FBgn0037934	FBtr0082439	2	1	1	62	3R	7507433	7507451	GAAGTGAGCAAGTTTGACG		59	7507334	7507407	CGTATCCAAGATCTCTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14691	FBgn0037829	FBtr0082314,FBtr0082313	2	2	2	119	3R	6579330	6579348	ATCATGACCTTTGGGAGAC		58	6579165	6579249	CAGAAAGGCAATTGACATCAG		59	NA	
Drosophila melanogaster	50	Ras85D	FBgn0003205	FBtr0082122	1	1	1	86	3R	5337711	5337885	AGTGGTTATCGATGGAGAG		58	5337643	5337661	ATATACTGATCCCGCATGG		58	NA	
Drosophila melanogaster	50	CG18005	FBgn0037660	FBtr0081995	2	1	1	60	3R	4890279	4890299	CAGATATGAAATCCGGAATCG		58	4890239	4890258	TTGGACTCCTGAATGATACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpA-70	FBgn0010173	FBtr0081867	1	1	1	182	3R	4088630	4088648	GATTACTTCCAGTGCAAGG		58	4088387	4088484	GATGCTCATGTTGATCAGC		58	NA	
Drosophila melanogaster	50	CG34357	FBgn0085386	FBtr0112568,FBtr0112567	1	2	2	137	3R	360240	363537	ACGTGATGTGGACTTAAGC		59	360121	360140	GTGCCAATGTAGATAGTGGA		59	NA	
Drosophila melanogaster	50	SPoCk	FBgn0052451	FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532	2	4	4	89	3L	22771852	22771870	GAAATGTTGATGCAGAGCG		59	22771923	22776536	GATACCGATGAGATTCGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5047	FBgn0037008	FBtr0078215	3	1	1	71	3L	20513103	20513121	GGAAATGGGATTCAATGCC		59	20512991	20513068	GGAGGAATCATCAAGAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ccn	FBgn0052183	FBtr0075186	3	1	2	115	3L	17723434	17731749	CGATACAGGTTGAGTTGCT		59	17731827	17731846	ATCATCTTCATCATCCTGGG		58	NA	
Drosophila melanogaster	50	CG12355	FBgn0040805	FBtr0075606	1	1	2	283	3L	15486663	15487040	CGTACAAATGGTTAGATCGC		59	15486261	15486282	CCAAATCAATCCACAAATACCC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	gnu	FBgn0001120	FBtr0075697	2	1	1	125	3L	14796263	14796339	CTATAGAGATCCCGCATCC		58	14796156	14796174	CCAAAGAGTCCGTATCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14128	FBgn0036218	FBtr0076036	1	1	1	90	3L	11873176	11873195	GAAATTGTTCAACAGCAAGC		58	11873248	11873323	TATCACACTGTGATGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6321	FBgn0036117	FBtr0076242	1	1	1	85	3L	11053818	11053900	AAGTCCCGTCAATTGTGAG		59	11053751	11053770	CAAAGTCCAACATTGTGGAC		59	NA	
Drosophila melanogaster	50	CG6409	FBgn0036106	FBtr0076273	3	1	1	62	3L	10874942	10875107	TATTATTCTCTTAGCCCTGGTG		59	10874901	10874919	GTAGACTCCTTGACATCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32036	FBgn0052036	FBtr0114525	1	1	1	71	3L	9481335	9481413	TTTACCACTTGAATGCCGA		59	9481282	9481300	CATAAGGTTCCAGCTCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5280	FBgn0035952	FBtr0076552	2	1	1	89	3L	8982482	8982566	AGGATCTCATAAACGAGCT		57	8982411	8982429	GATACTTCTTACCCTGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7185	FBgn0035872	FBtr0076710	2	1	1	76	3L	8305157	8305385	AGAGCTGTTTCTGATGCAG		59	8305099	8305117	TTGATCAGTGAAATGGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7942	FBgn0035838	FBtr0076686	1	1	2	117	3L	8115214	8115287	AAATACTACAGTGGCGAGC		59	8115368	8115386	AAATATTTGGAGCCACCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10625	FBgn0035612	FBtr0077140,FBtr0077139	3	2	7	121	3L	5535646	5535664	TAATGAGGGAACCTACACG		58	5534359	5534445	CGTTAATACCGTTATAGCGTC		58	NA	
Drosophila melanogaster	50	Dhc64C	FBgn0010349	FBtr0073360,FBtr0073359	3	2	2	136	3L	4822130	4822148	CTTTACCATCGAGTCAACG		58	4821959	4822030	TCAGTGGAACTCTAAAGCC		58	NA	
Drosophila melanogaster	50	CG1295	FBgn0035509	FBtr0073222	2	1	1	61	3L	4204788	4205232	ATCTCCAACAGAGTGAAGC		59	4205256	4205275	CACAGATGTAGTTCGATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14968	FBgn0035431	FBtr0073087,FBtr0073090,FBtr0073089,FBtr0073088,FBtr0073086	3	5	5	74	3L	3300774	3300793	CCTCCAACAACAGTAGTACC		59	3300044	3300737	TCACCTTGAACGTTATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL8	FBgn0024939	FBtr0072924,FBtr0072925	1	2	2	185	3L	2588591	2588609	CATCAGCACATTGGTAAGG		58	2588758	2588776	ACCACTACCCAGATCTCAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12099	FBgn0035232	FBtr0072829,FBtr0072828	3	2	2	95	3L	1556339	1556357	CTTGCCTTTGACTTGTCAG		58	1556208	1556282	AGAATGTCCTCCTTAAAGAGC		59	NA	
Drosophila melanogaster	50	CG9119	FBgn0035189	FBtr0072635	2	1	1	186	3L	1204274	1204560	AGAACGTTATACAGGGTGC		59	1204106	1204124	TTGTACAGCTTATCTCGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RabX6	FBgn0035155	FBtr0072577	3	1	1	94	3L	690715	690733	CTTCATCACGGATACGGAC		59	690791	690958	AGAGTTGGAGCTTGATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mthl10	FBgn0035132	FBtr0072572	1	1	2	80	3L	335162	335255	GAGAAGGACAAATTCGGCT		59	335100	335119	GAAGTACGAGATAAGCTCCG		59	NA	
Drosophila melanogaster	50	CG11413	FBgn0035022	FBtr0072305	1	1	1	168	2R	20424027	20424045	CATAAAGCCGGTGATTGTG		59	20424174	20424195	CACCTTTCTCTTTCTCTTACTG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4329	FBgn0034745	FBtr0071939,FBtr0071940	1	2	2	107	2R	18498883	18500826	GTTTCTAATCTCTGGCGGA		59	18498794	18498812	GAGATGGTCACGTATTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11291	FBgn0034713	FBtr0071773	1	1	1	60	2R	18099641	18099660	GAAGTCTGGCGAAATAAAGC		59	18099681	18099755	GTCTGATTTAAGCGAGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13502	FBgn0034692	FBtr0113103	2	1	2	63	2R	17974262	17974280	AGATCAAGAATGCCAATCC		57	17974055	17974235	CTATTCAGCTCAAGAGCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9822	FBgn0034623	FBtr0071612	1	1	1	152	2R	17234695	17234782	TAAGCTGACCAAAGACCTC		58	17234561	17234579	TAGACACTGGCATAGTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Obp56h	FBgn0034475	FBtr0086335	3	1	1	60	2R	15703090	15703109	CACCCTATTCTGTATTGCTC		57	15703131	15703208	AAAGTCCGGATTACACTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5-HT1B	FBgn0004572	FBtr0086599	3	1	1	85	2R	14914735	14914753	TATTTGGTTGCATCTCTGG		57	14914212	14914688	CCATTACTTATCTCGTAGACG		57	NA	
Drosophila melanogaster	50	CG4827	FBgn0034225	FBtr0086926	3	1	1	112	2R	13367672	13367690	ATCTCAATGCAGGTGACAC		59	13367766	13367848	GTTGCCCAGAGAAATAGCA		59	NA	
Drosophila melanogaster	50	Ih	FBgn0028428	FBtr0100370,FBtr0100372,FBtr0100369,FBtr0100371	1	4	4	81	2R	10184940	10185102	TCAACTACAACTGCAGATCC		59	10185146	10185164	GTAACTACGTCGGAAACGA		59	NA	
Drosophila melanogaster	50	mars	FBgn0033845	FBtr0087668	3	1	1	79	2R	9391978	9391996	TTTACGCGTTACTCAGTGG		59	9392038	9392114	TCTTCTTTAACCGTCGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30061	FBgn0050061	FBtr0087711	1	1	1	108	2R	9323793	9323811	CATACTATCACGCCAGAGC		59	9322737	9323721	CAATTCTTCGTACTCCGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13169	FBgn0033704	FBtr0087997	1	1	1	127	2R	8128980	8128998	TTTCAAGAACGACTGTCAG		57	8129152	8130051	TTTCAATATCACTTCCGCAG		58	NA	
Drosophila melanogaster	50	CG10395	FBgn0033019	FBtr0086087	2	1	2	77	2R	1238315	1238393	TGGTGAAAGAAGGTTCTAAGG		59	1238430	1238450	GAAGTTCTTTAGGTCTCAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	d4	FBgn0033015	FBtr0086083,FBtr0111115,FBtr0086082	3	3	3	113	2R	1182527	1182545	CAAACGTAGAGGGTACTCC		59	1182673	1182692	TATTTGCACTATTTCCACCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12547	FBgn0040521	FBtr0111273	2	1	1	64	2R	674683	674704	GCAAAGCTTCTATGATAGATGG		58	674578	674659	ATTAAGTGGGTTTCGATCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Gr39a	FBgn0041244	FBtr0081511	2	1	4	94	2L	21297160	21297178	ATGTTACGCACTAATGGCA		59	21297329	21297457	ATCATTCTATCCAACCCAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10383	FBgn0032699	FBtr0089628	1	1	1	85	2L	18692905	18692983	GAACAGGATCCCATTGAGG		59	18692838	18692856	TTTAGTAAGTCCGTGTCGG		59	NA	
Drosophila melanogaster	50	Mst36Fa	FBgn0086681	FBtr0081074	3	1	1	190	2L	18675956	18676025	GTTCGAAAGGAAATCAGCC		59	18675784	18675802	ACTCATACATGAGTCCGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sos	FBgn0001965	FBtr0080541	3	1	1	99	2L	13816692	13816774	TCAGAGAAAGAACGAGCAG		59	13816837	13816855	GTCGTTGGGTACACTAAGG		59	NA	
Drosophila melanogaster	50	CG14930	FBgn0032366	FBtr0080245	3	1	1	143	2L	11520511	11520532	CATCAATAGATCCTATAGCTCG		57	11520389	11520408	GTCGATAAATTGACAGTTGC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG6206	FBgn0027611	FBtr0080031,FBtr0080030	3	2	2	94	2L	10460436	10460454	CTCTACAATCCACTGGCTC		59	10460510	10460590	AGAGTAACACCCTTGTTATCG		59	NA	
Drosophila melanogaster	50	nmd	FBgn0005322	FBtr0080065	2	1	1	107	2L	10303737	10303757	CGCTGATCACATATTATTCGG		59	10303594	10303668	CTAGCCTCTTAAGCTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13121	FBgn0032145	FBtr0079922	1	1	1	109	2L	9770967	9770985	GGAGGAGTCCTACTATCGG		59	9770598	9770895	AGATAGCTTTGGCATATCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf11	FBgn0011291	FBtr0079924	1	1	1	281	2L	9763152	9763170	ACGAAATCCTCTTTCCCAC		59	9762827	9762907	AGTTGGAAACGAGAACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr30B	FBgn0032125	FBtr0079831	1	1	1	243	2L	9542958	9543047	AGTTACCTATTTGTTGTGCC		58	9543253	9543271	GAAACCGTTGTGATCATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13392	FBgn0032033	FBtr0079720	1	1	1	144	2L	8382517	8382600	AATAGGCGAAGTATGGTCG		59	8382391	8382409	GACAATCGGGAGGTAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567,FBtr0079574	1	9	9	83	2L	8107166	8107248	GACCTTTGCCAATGTAACG		59	8107295	8107313	AGAATGGCGTTAGGAACAC		59	NA	
Drosophila melanogaster	50	CG7211	FBgn0031941	FBtr0079481	1	1	1	60	2L	7747624	7747643	TAAAGAAGTCCGGACTTTCC		59	7747666	7747684	GTGACCAGAACATTTAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pvf2	FBgn0031888	FBtr0079423	3	1	1	125	2L	7070929	7074254	AATAATCGTACCAGGGAGC		58	7070822	7070841	GTAGAACGTGTTCGTTTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31637	FBgn0051637	FBtr0079287	3	1	1	81	2L	6525813	6525895	CAGAAGAGATCAAGCAAATCC		59	6525938	6525956	TTGTTGAAGTTCTCGATGC		58	NA	
Drosophila melanogaster	50	CG13993	FBgn0031776	FBtr0079191	1	1	1	110	2L	6069482	6069570	GACACAAGAGTTTACCAGTC		58	6069643	6069661	CAGTTCTATCGCTTTGTCG		58	NA	
Drosophila melanogaster	50	mtm	FBgn0025742	FBtr0079223	2	1	1	67	2L	6035207	6035280	AAGATCTCAAGCACAAGAC		57	6035158	6035176	ATTCAAATACTGGTCCAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15628	FBgn0031632	FBtr0077384	2	1	1	74	2L	4825640	4825658	CGTTTGGTGCATGAATCAG		59	4825696	4826449	AAACTTTAACGATTCCGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31698	FBgn0051698	FBtr0077612	2	1	1	80	2L	3173531	3173551	TCTACTTCGTATGCAAGTCAG		59	3173404	3173489	AAAGAAGACGGGCATATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4238	FBgn0031384	FBtr0113013,FBtr0077820,FBtr0113014	1	3	3	119	2L	2028919	2028938	GAAAGTGTCTGTTTGAGAGC		59	2029017	2029101	GTTCGAAGTACTTGTAATGCAC		59	NA	
Drosophila melanogaster	50	CG17712	FBgn0027597	FBtr0077903	3	1	1	61	2L	1751901	1751919	TGAAAGAGGCGAAAGAGAC		59	1751858	1751877	GTCGATTACGTTCGTATGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13693	FBgn0031235	FBtr0078126	2	1	1	245	2L	233136	233217	GCGGATATTGAAAGAAATGC		57	233423	233443	GGTTAACTTCATAGTTCCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9723	FBgn0030768	FBtr0074376	1	1	1	62	X	16548650	16548668	ATTATTCCCAGTACGGTGG		58	16548606	16548624	ATTGCTTGTCCTTGTAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dsp1	FBgn0011764	FBtr0089259,FBtr0089261,FBtr0089260	2	3	5	242	X	16228439	16230334	AAATACAGCAATTGGCTGC		59	16230540	16230558	GATAATCATAGCCCGTGGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	l(1)G0136	FBgn0026666	FBtr0074084	3	1	1	97	X	15629320	15629338	CTTCATCGACAAGAAAGCG		59	15629465	15629484	TGTTCGGATTGTTAAACACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tango4	FBgn0030365	FBtr0073622	2	1	1	62	X	11916286	11916304	CATAGTCCTCCATCCATCG		58	11916330	11916348	CACTGCTTGATGTTATCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lz	FBgn0002576	FBtr0112814	1	1	2	162	X	9182570	9182588	CAATGATCTGCGTTTCGTG		59	9188048	9196016	CATCATTTCGGCTGTTGTC		59	NA	Nonspecific
Drosophila melanogaster	50	ND75	FBgn0017566	FBtr0071180,FBtr0071181	1	2	2	171	X	8143115	8143194	GCACTATTAGCAAATCCATCG		59	8142964	8142982	TAGATAGCCACACTCTGCT		59	NA	
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	2	12	15	239	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978621	6978640	AATTGATCTACCTCTGTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070738,FBtr0070739,FBtr0070740,FBtr0100408	1	4	4	214	X	4962802	4962820	CAGTATGCCTACAAGGAGC		59	4963094	4963112	TAATTGTGGACTGGCATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6986	FBgn0029723	FBtr0100551,FBtr0100552,FBtr0070714,FBtr0070713	3	4	4	92	X	4619144	4619162	TCCAGCACTATGACTATCC		57	4619218	4620277	AGATGTAACCGAAACTGTC		57	NA	
Drosophila melanogaster	50	trol	FBgn0001402	FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964	2	4	7	81	X	2386428	2386447	ATAGTAATGATCGCAGACCG		59	2384863	2386384	CCAACGTCGTTATTCTCCT		59	NA	
Drosophila melanogaster	50	csw	FBgn0000382	FBtr0070378,FBtr0070379,FBtr0070380	1	3	3	84	X	2005097	2005115	ATATACAGACCCTGATCGC		58	2005161	2005246	CCCGTGTACTTTATATTGGTG		58	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	2	7	7	83	4	208987	209060	CGGATCATAGACTTACGGA		57	208922	208940	CGAAGCATGGTTTAGTCAG		58	NA	
Drosophila melanogaster	50	CG1499	FBgn0039852	FBtr0085791,FBtr0085792	1	2	2	84	3R	27386436	27386454	AGTGGATTCGGTTTACCAG		59	27386501	27386586	GTAAGAGTGGCATCTGTAGG		59	NA	
Drosophila melanogaster	50	BG642167	FBgn0083939	FBtr0110770	1	1	1	68	3R	21632400	21632418	GAAACATCCGATCTCTGGA		58	21632450	21632468	ATTTATCGAGGCTTGAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6178	FBgn0039156	FBtr0084550	1	1	1	109	3R	19979390	19979409	AGGACGTGTCTCTTATTGTG		59	19979481	19979555	AGTGGGTTGGATTTGTGAG		59	NA	
Drosophila melanogaster	50	CG5991	FBgn0026576	FBtr0084537,FBtr0084536,FBtr0084538	3	3	3	60	3R	19878273	19878292	TACGGATGGTATTCCAACAC		59	19878315	19878333	CATACTCCGGATACATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	KrT95D	FBgn0020647	FBtr0084508,FBtr0084507,FBtr0084506	3	3	3	106	3R	19824628	19824646	GGATAAGGAGCGTGATCTC		59	19824479	19824558	CATCAATGTACACTCGCAG		58	NA	
Drosophila melanogaster	50	hh	FBgn0004644	FBtr0084404,FBtr0100506	1	2	2	120	3R	18955125	18958733	GTCAAGTCAGATTCGTCGA		59	18955023	18955042	AAACACGATCTCCGATAGAG		58	NA	
Drosophila melanogaster	50	CG14907	FBgn0038455	FBtr0113242,FBtr0083354	1	2	2	60	3R	12477487	12477506	CTAGAGATCCCAAGGTTGAG		58	12477446	12477464	CTGGCGTACATAAGTTCGT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204	3	6	8	198	3R	11782022	11785052	GACTGATGAGGAACAATGG		57	11785214	11785232	CTCCCAATCGTTGTTAGTC		57	NA	
Drosophila melanogaster	50	Octbeta3R	FBgn0053959	FBtr0099998	2	1	5	148	3R	8344783	8344895	ATCTTTAAGGAGGCGATTCG		59	8338728	8338865	AGCGATGTGATGACATACC		59	NA	
Drosophila melanogaster	50	Alh	FBgn0037471	FBtr0113199,FBtr0081615	2	2	6	130	3R	2921228	2921310	GAAGATGATCTCAGCAGCA		59	2921116	2921134	TTGTCGTTCTTATGCAACG		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	kkv	FBgn0001311	FBtr0078798,FBtr0078800,FBtr0078799	3	3	3	99	3R	1204859	1204877	GTAAGAATTCGGTGATGGC		58	1204709	1204796	TTGTTGTTAATCGGTGCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	snoRNA:Or-CD11	FBgn0086082	FBtr0114358	2	1	1	62	3L	20446835	20446854	AAATGTGAAGAGCATTCCAC		58	20446879	20446897	ACGGAATAGTCAAGCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32450	FBgn0052450	FBtr0078501	2	1	1	62	3L	22323189	22323207	CTGTTTGTGGTAGTTCCCT		59	22323233	22323251	CCGCACATATTTGTACACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5161	FBgn0036573	FBtr0075491	3	1	1	61	3L	16124273	16124291	CCTTCTATCGCATCAACAC		58	16124230	16124250	AAAGATCTCCGACTTCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cp309	FBgn0086690	FBtr0099992	1	1	2	84	3L	15074253	15074442	TGACTATAAGCCTGCAACC		59	15074187	15074205	AATAAGGGAGGTATTCGCG		59	NA	
Drosophila melanogaster	50	Tsp68C	FBgn0043550	FBtr0075751,FBtr0075752	1	2	2	60	3L	13837545	13837563	GAAGTTCCTTGGACTACGA		58	13837586	13837605	CAATTCCTTTGTCCATAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6327	FBgn0036115	FBtr0076245,FBtr0076244,FBtr0076243,FBtr0076246	1	4	4	106	3L	11030799	11030817	GATTGCCCTCTACACTCTG		59	11030645	11030729	ATTGGGCCAACTTATCCTC		59	NA	
Drosophila melanogaster	50	ect	FBgn0000451	FBtr0076305,FBtr0076306,FBtr0076307	1	3	3	60	3L	10188942	10188962	TGATGACGATTATCTGGACAG		59	10188793	10188921	ATCCTCATCTTCATCATCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33696	FBgn0053696	FBtr0091684	3	1	1	151	3L	9646634	9646652	TTCACGCTTTCTTCATCAC		58	9646883	9651912	GTATTCAGAAACTGTCACTTGG		59	NA	
Drosophila melanogaster	50	CG10274	FBgn0035690	FBtr0113149,FBtr0077018	3	2	2	60	3L	6173650	6173668	GAAGCACATGTACAAGCAC		59	6173608	6173626	TTTGCCACAGATGTTACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10479	FBgn0035656	FBtr0077070	2	1	1	145	3L	5962031	5962050	ATAAACAGGAACCGATCCAG		59	5961685	5961925	GAGAAGGTCCTCATCATAGTC		59	NA	
Drosophila melanogaster	50	CG14998	FBgn0035500	FBtr0073267,FBtr0073265,FBtr0073268,FBtr0113135,FBtr0073269,FBtr0073266	1	6	6	107	3L	4126918	4126996	TCTCGAGGAGATTAACAAACTC		59	4126832	4126851	GACATAAGGTTTGCAGTTCG		59	NA	
Drosophila melanogaster	50	zormin	FBgn0052311	FBtr0110857	1	1	4	97	3L	2119118	2125246	TCAATACGATCAAGGCACTC		59	2119040	2119058	TATTGACGCCATTACCCAG		59	NA	
Drosophila melanogaster	50	p130CAS	FBgn0035101	FBtr0113120,FBtr0072474	1	2	3	101	3L	168759	168777	CAAACTCAAATTCGGGAGG		58	168842	172070	GTGTGATTACCTTTGTCGG		58	NA	
Drosophila melanogaster	50	CG2765	FBgn0035087	FBtr0113119,FBtr0113118,FBtr0072408	3	3	3	212	2R	20849156	20849174	TATGGACGACACCATACTG		58	20848860	20848879	GAGTTCAGCATGTTGTACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG30222	FBgn0050222	FBtr0071655,FBtr0071656	1	2	2	104	2R	17470719	17470737	CTTAGACGCTTTGATGAGC		58	17471237	17471312	ATCGAAGTCAGTGATTCGG		59	NA	
Drosophila melanogaster	50	aPKC	FBgn0022131	FBtr0110996,FBtr0110998,FBtr0110999,FBtr0110997,FBtr0110995,FBtr0087426	3	6	6	85	2R	10835448	10835466	TGCTCTATGAGATGTTGGC		59	10835324	10835401	CAGATAGTCCTCAGTGTTCTG		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	2	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421092	TAGTAAGGTAGCAAAGTAGGG		58	NA	
Drosophila melanogaster	50	CG34363	FBgn0085392	FBtr0112584,FBtr0112585	1	2	2	80	2R	6226735	6226815	GCTATAAGGGCAACATCTG		57	6226673	6226692	TAAGTGCAAAGGGTATTGTC		57	NA	
Drosophila melanogaster	50	14-3-3zeta	FBgn0004907	FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414	2	10	10	71	2R	5991854	5991872	TGTCGACAGTCGATAAGGA		59	5991904	5992232	TATCATCGTAACGTTCTGACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2264	FBgn0033478	FBtr0088400,FBtr0088399,FBtr0088401,FBtr0088402	1	4	5	152	2R	5948857	5949128	GAGTTTCACAACCGTAGTG		58	5949244	5949262	GTGTGGATTAACTCCAGTG		57	NA	
Drosophila melanogaster	50	PRL-1	FBgn0024734	FBtr0080857,FBtr0080856	3	2	2	90	2L	16248848	16248866	CGACCATCAGACATAACCA		59	16248714	16248732	TATAGCTAGGTTCGCACAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7311	FBgn0028848	FBtr0080530,FBtr0080529	1	2	2	60	2L	13709333	13709351	CTGGAAACCCAAGTATCCC		59	13709373	13709393	GACTCAACAAACCGTAATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6415	FBgn0032287	FBtr0080108	2	1	1	60	2L	10704293	10704312	TTCATGAGTTCCTTCGTCAC		59	10704335	10704353	CACATCTCGTGATCCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18284	FBgn0043825	FBtr0080100	2	1	1	92	2L	10645233	10645251	TCTGCACCAAACTTATCCC		59	10645304	10645379	GGGATAGTGTCATATTGAAGCT		59	NA	
Drosophila melanogaster	50	Pp2A-29B	FBgn0005776	FBtr0005088,FBtr0100533	2	2	2	96	2L	8367857	8367934	GATGATGTAGAGCACCTGG		59	8367994	8368012	GATCAACAAACTTCTCGGC		59	NA	
Drosophila melanogaster	50	CG11266	FBgn0031883	FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638	3	7	7	117	2L	7036715	7036823	TTATCACGTACCACAATGCT		59	7036903	7036921	GTATTCATGTCCAGTCGCT		59	NA	
Drosophila melanogaster	50	Gr22e	FBgn0045497	FBtr0077888	2	1	1	60	2L	1784330	1784348	GCATTCACGACATTCAGAG		58	1784371	1784390	TTCCAGAAACTTCTCAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32495	FBgn0052495	FBtr0089800,FBtr0089799,FBtr0089801	1	3	3	82	X	17798672	17798835	ATAAGCTGCACAATATGCC		58	17798881	17798899	CTTTGCATAGATGTCCCAC		58	NA	Nonspecific
Drosophila melanogaster	50	Ag5r2	FBgn0020508	FBtr0073938	1	1	1	151	X	14677279	14677539	ATCCGGATATAACGGACCT		59	14677146	14677164	GTCCGATCATATTGGTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9034	FBgn0040931	FBtr0071343	3	1	1	155	X	9053867	9053943	TTTGTGTACCAAGATGTCC		57	9053730	9053748	TCCTTGGCATAGTAGTTGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG5467	FBgn0039433	FBtr0085028	2	1	1	240	3R	22423839	22424310	TGATTAATGCTGAGAAGCG		57	22424909	22424927	ACAATCTTCTCATCGAGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	svp	FBgn0003651	FBtr0082564,FBtr0082563	3	2	3	295	3R	8107955	8115932	ACAATTTACCTGCGAAGGT		59	8119840	8119858	TGTAGGAACTGAGGTACGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6830	FBgn0037934	FBtr0082439	1	1	1	61	3R	7507433	7507451	GAAGTGAGCAAGTTTGACG		59	7507335	7507408	GTATCCAAGATCTCTGGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Mst77F	FBgn0000093	FBtr0078270	2	1	1	112	3L	20810784	20810802	CTTTAAGAAGCGCTACGGA		59	20810628	20810708	ATGGTTCCGCAGAATACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9674	FBgn0036663	FBtr0075341,FBtr0075344	3	2	4	87	3L	16785600	16785618	TAAGAATGCCGGATTACCC		59	16784781	16785549	AACAATCACACGTGATCGT		59	NA	
Drosophila melanogaster	50	CG10332	FBgn0034881	FBtr0072109	1	1	1	71	2R	19489124	19489142	AGTTATCTGGTTGTCCTGC		59	19489003	19489089	TTCTGTTTGCAGATCCTCC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Xbp1	FBgn0021872	FBtr0071571,FBtr0071572	1	2	2	78	2R	17031640	17031722	AAGAAGCTAAAGAACCGTG		57	17031764	17031782	TCTCGTAGTCCATCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6984	FBgn0034191	FBtr0086979	1	1	1	130	2R	12979979	12980054	CAAGTTCTCTACTCCAGGG		58	12980148	12980166	CTTCTTCACCAGTAACGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ca-beta	FBgn0015608	FBtr0080218,FBtr0080217,FBtr0080220,FBtr0080219	1	4	4	62	2L	11165965	11166043	AGTTGGATAAAGCGAGGAG		59	11165921	11165939	CATCGTATGCTACGTTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7224	FBgn0031971	FBtr0079532,FBtr0100151	2	2	2	157	2L	7999167	7999266	GTGAGCTATCTATCGACGA		58	7999387	7999405	GAGAATTCATCCAGCTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me28S-G2017	FBgn0086057	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-A2634c	FBgn0082944	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR32449	FBgn0052449	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:G3:57BCa	FBgn0011871	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:H:56E	FBgn0011879	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me18S-C1831	FBgn0065053	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	stnA	FBgn0016976	FBtr0111139,FBtr0111140	2	2	2	60	X	22386604	22386682	AGCACTTCAGATATGGTTCG		59	22386563	22386581	ATACCCTTGATCTTGCCTG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	car	FBgn0000257	FBtr0074727,FBtr0074728	1	2	2	62	X	19461128	19461146	GATGAGTTCTACGGCATCC		59	19461172	19461190	GTCAGAGGGAAAGTTCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8188	FBgn0030863	FBtr0074476,FBtr0100463	3	2	2	169	X	17595343	17595361	TGATGACAGAGATCCATGC		59	17595052	17595070	TAATCTCTTCAGCATGCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	ppk23	FBgn0030844	FBtr0074491	3	1	3	102	X	17461885	17461903	CCTACACATTCTCCTCCTG		58	17461726	17461820	ATAGGCACATTAGGTATGGG		58	NA	
Drosophila melanogaster	50	CG12993	FBgn0030840	FBtr0074437	1	1	1	117	X	17341272	17341290	CTTATACCTACTGCGGACG		59	17341079	17341191	TAGCTTCTGGCTAATTCGG		59	NA	
Drosophila melanogaster	50	CG9782	FBgn0030763	FBtr0074288	1	1	1	149	X	16510175	16510193	GAGTATGACGAGGAAACCG		59	16510044	16510062	GAGGAAGTCATCGTTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dsp1	FBgn0011764	FBtr0089259,FBtr0089263,FBtr0089261,FBtr0089262,FBtr0089260	3	5	5	79	X	16230977	16230996	AAGAAACATCCCGATGAGAC		59	16231038	16231132	TTGTCCACCATTGTCTTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211	2	5	5	112	X	16178691	16178711	CTCTATGTCCAGGTCAATCAG		59	16178784	16179063	AATGCATAGCCTACGTAGTC		59	NA	
Drosophila melanogaster	50	CG8974	FBgn0030693	FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186	2	5	5	211	X	15688455	15688537	GATCCACGTAACAAAGTTCC		58	15688198	15688216	TGTTCATCCTCGTATTGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Rhp	FBgn0026374	FBtr0074096,FBtr0074095	3	2	2	84	X	15685124	15685279	TCTATCAGAGCGAAAGTCAC		59	15685324	15685344	GGTTCCATGAAATTGATCTCC		59	NA	
Drosophila melanogaster	50	CG8260	FBgn0030684	FBtr0074089	2	1	2	124	X	15651251	15651353	TATCTATACGACGTTCGAGC		58	15651440	15651458	AATGTCACTAAATTCGGGC		58	NA	
Drosophila melanogaster	50	Graf	FBgn0030685	FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197	2	6	6	81	X	15646356	15646434	TAACCAATGTTCGTTACTCC		57	15646294	15646312	TAGTTCTCCGGAATGAGTC		58	NA	
Drosophila melanogaster	50	CG14406	FBgn0030595	FBtr0073977	2	1	1	80	X	14804732	14804750	GATGTGATAACAGGAACGG		57	14804670	14804689	GATGGGCAATTGATCATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0007	FBgn0026713	FBtr0073900,FBtr0073901	1	2	2	96	X	14117987	14118070	CAGAACAATTACAGTTCGACC		59	14118128	14118146	TGATGTCCTTAAGCTGCTG		59	NA	
Drosophila melanogaster	50	CG11164	FBgn0030507	FBtr0073809	1	1	1	60	X	13562864	13562882	TATGTGGGACGGTATTTGG		59	13562906	13562924	GAATGTGCAGGTAACTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15745	FBgn0030469	FBtr0073758,FBtr0073759	1	2	2	60	X	13200444	13200464	GACTATTCGGATGACATAACC		57	13200483	13200504	GACGAAAGTATTCCATTTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3812	FBgn0030421	FBtr0073689,FBtr0073688	2	2	2	233	X	12663817	12663835	CATCATTGTGGCCAATCAC		59	12664122	12664140	CACAGTTTGATACGTTGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11727	FBgn0030299	FBtr0073546	2	1	2	138	X	11329586	11329605	GAAATTTCCCGTCTTGAGAC		58	11328832	11329418	TTATTGGCGTGGGATACTC		59	NA	
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073487,FBtr0073485,FBtr0073489	2	3	12	195	X	11284563	11289280	ATCTGGATTCGGTGAATGG		59	11289438	11289457	ATATCGTTGATGCTCAGACG		59	NA	
Drosophila melanogaster	50	CG1961	FBgn0030264	FBtr0073432	3	1	1	159	X	10999483	11000535	CAACAGAGGCAATCTTACG		58	11000658	11000676	ATTGATGTACGATCCGGTC		59	NA	
Drosophila melanogaster	50	CG1961	FBgn0030264	FBtr0073432	1	1	1	96	X	10999408	10999427	GGCTTCATATGAAGAGAAGG		57	10999486	11000538	GTACGTAAGATTGCCTCTG		57	NA	
Drosophila melanogaster	50	CG1582	FBgn0030246	FBtr0073403	1	1	1	83	X	10790894	10790977	CGATACGCGGAATATAGCA		59	10790829	10790847	GGATTCGATCAGTTCTGGA		58	NA	
Drosophila melanogaster	50	CG32669	FBgn0052669	FBtr0073412	2	1	1	60	X	10738097	10738115	ATTCTGTGCCTGCTTAGTC		59	10738055	10738074	GGTAGTACCAGTAGATGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32683	FBgn0052683	FBtr0071463	2	1	1	156	X	10346314	10346332	GAAGTGGAGATGGATGTCG		59	10321537	10346194	CACGATGAGTGGATCTGTC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG7033	FBgn0030086	FBtr0071291,FBtr0071289	1	2	2	122	X	8985099	8985117	CGAGCTCAAGTCCATACAG		59	8985203	8985453	GCATTCTCAATACGCTGTG		59	NA	
Drosophila melanogaster	50	CG33181	FBgn0053181	FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451	3	5	5	83	X	8409419	8409506	TCAAAGGAGTTCCCTATGC		58	8409553	8409571	CAGCAGCAAAGATGAACAG		59	NA	
Drosophila melanogaster	50	CG2258	FBgn0029997	FBtr0071109,FBtr0071111,FBtr0071110	1	3	3	80	X	7991099	7991205	CAATCGAGAGGATGATCCC		59	7991037	7991056	ATGTCGATAAACATTCGCAG		58	NA	
Drosophila melanogaster	50	COQ7	FBgn0029502	FBtr0070963	3	1	1	152	X	6666725	6666743	GTCAGATAATGGAGGCACC		59	6666921	6666940	CAAACTTGATTACCTCGGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4095	FBgn0029890	FBtr0070955	3	1	1	136	X	6577282	6577303	CGAGCTAAATGTATTCAAACCC		59	6577460	6577478	TGATCTTGTCGATCCTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	APC7	FBgn0029879	FBtr0070947,FBtr0070946	3	2	2	84	X	6492970	6492988	ACTATTACAAGGCATTGCG		58	6493106	6493124	GATTCATCGTCGGATTTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34417	FBgn0085446	FBtr0112705,FBtr0112704	1	2	5	84	X	6481127	6482107	AGGAATATGAGAACGTCCA		57	6482155	6482173	AAGAAATGGTGTATCAGCG		57	NA	
Drosophila melanogaster	50	CG3823	FBgn0029863	FBtr0070900	1	1	1	103	X	6200318	6200425	GGAGCAGAGGGATTATCTG		58	6200492	6200510	GTAGACCTTCTGTGACTCC		58	NA	
Drosophila melanogaster	50	Lag1	FBgn0040918	FBtr0070937,FBtr0070938	1	2	2	121	X	6152768	6152788	AGCCTACTACATCTTCAACTC		58	6152524	6152685	GTATGTCACCGGACATCAG		59	NA	
Drosophila melanogaster	50	CG4165	FBgn0029763	FBtr0070774,FBtr0070772,FBtr0070773,FBtr0070775	1	4	4	80	X	5317037	5317156	TAGAACACTACCAGACACC		57	5317200	5317218	ACTCATAGCACCAGATGTC		58	NA	
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070769	2	1	7	101	X	5292703	5292721	TTTACATCCTGACACAGCT		58	5292785	5293573	GGAACACTTCTAGAATGTGG		57	NA	
Drosophila melanogaster	50	CG4198	FBgn0029753	FBtr0070750	2	1	1	60	X	5208750	5208769	CATGAGGTCTCAATGATGCT		59	5208792	5208810	CATAGTCGGTTGGGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32767	FBgn0052767	FBtr0070761,FBtr0070760	1	2	2	103	X	4972049	4972158	AACAGGTGTTATTTCGCCA		59	4971964	4971982	CTATCGATAGTGGCACACC		59	NA	Nonspecific
Drosophila melanogaster	50	CG6986	FBgn0029723	FBtr0100551,FBtr0100552,FBtr0070714,FBtr0070713	2	4	4	92	X	4619145	4619163	CCAGCACTATGACTATCCC		58	4619218	4620278	GAGATGTAACCGAAACTGTC		58	NA	
Drosophila melanogaster	50	CG2982	FBgn0029704	FBtr0070649,FBtr0070648	3	2	2	60	X	4214436	4214454	ACGAAATACTGATTCGCCA		59	4214478	4214496	TTGTAAGTGGTCACATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2930	FBgn0028491	FBtr0070608	1	1	3	169	X	3771338	3771359	GCTCATCCTAATCTTTATACCG		58	3771489	3773055	TCAATGGGTAAGTGTGCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514	2	9	14	87	X	3215176	3215194	TCTATATCGCTCCGATTCG		58	3215244	3219972	CTGTTCTTTAAACCTTTCGC		57	NA	
Drosophila melanogaster	50	CG3939	FBgn0040396	FBtr0070508	3	1	1	68	X	3069646	3069664	GAGAAAGACAAGGACGGAC		59	3069970	3069989	GGCACTCATGATAGTTTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dwg	FBgn0000520	FBtr0070487	1	1	1	133	X	2622876	2622894	AGATGATTGTGATACCCGC		59	2623053	2623071	CAGGAAGTCCTCATCTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	HLH3B	FBgn0011276	FBtr0070506	1	1	1	87	X	2575464	2575482	GTCCATATCCGATGGAGAC		59	2575395	2575413	GTAATCGCGAAGATCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	egh	FBgn0001404	FBtr0070440,FBtr0070439	1	2	2	95	X	2490992	2491010	TTCAAGCTCTTTCACAAGC		58	2491380	2491398	GATTCCGTTGTCAAAGGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3071	FBgn0023527	FBtr0070398	3	1	1	60	X	2158012	2158031	GAAAGTACTTCGTGAGTACG		58	2158053	2158072	TTGATGGTGTGATCAACCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or2a	FBgn0023523	FBtr0070397	3	1	1	60	X	2140947	2140965	AAAGTCCAATAAAGGGCAG		57	2140989	2141007	GATGAGTTCCTGGTACACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab27	FBgn0025382	FBtr0070294	1	1	2	77	X	1368831	1368849	CGACTACGATTACCTGCTC		59	1368772	1368790	GTGTACTGGTAGAGGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177	1	4	5	148	X	938610	938688	AATCTGGATAAGGCTCCTG		58	938800	938818	CTATCTGGCATACCTGGTC		58	NA	InUTR
Drosophila melanogaster	50	MED22	FBgn0040339	FBtr0070165	3	1	1	135	X	822447	822465	ACAGCCAGATTTCGAAGAC		59	822627	822646	TCGTTGAGGATTAGGTACTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7359	FBgn0025617	FBtr0070141	2	1	1	87	X	700766	701012	ACCTATTCCACTACCTAATCG		58	701061	701079	AGGTAATTGAAGGCCAGTC		59	NA	
Drosophila melanogaster	50	svr	FBgn0004648	FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070082	1	5	7	104	X	396960	398709	AACTTTGATGGCAACTTCC		58	398777	398795	GTGTTCGTATTTAGTCGGG		57	NA	
Drosophila melanogaster	50	CR41619	FBgn0085825	FBtr0114283	1	1	1	60	U	10029971	10029989	CGTGCAAATCGATTGTCAG		59	10030011	10030031	CTACTAGATGGTTCGATTGGT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0100346	3	1	7	91	4	1128888	1128908	TACGTCTATGCTTTACGACAG		59	1128961	1129114	TAAGCGAACCAATGGAAGG		59	NA	
Drosophila melanogaster	50	bt	FBgn0005666	FBtr0089793	1	1	4	100	4	748860	751409	TAAACTTCGACAGTGCGAG		59	751472	751491	CTTCATGGTGATCAATGTGC		59	NA	
Drosophila melanogaster	50	dpr7	FBgn0053481	FBtr0113462,FBtr0113463	1	2	3	80	4	270357	270431	GTTCACGTATTAACTGGTGAG		58	270297	270315	TATCATTGCAGTGAAAGCC		58	NA	
Drosophila melanogaster	50	CycG	FBgn0039858	FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799	1	5	5	90	3R	27426459	27426477	CATCAAGGAGTCGTACACC		59	27426317	27426407	ATCAGGAATCCTCATGTACTG		58	NA	
Drosophila melanogaster	50	gskt	FBgn0046332	FBtr0085784	3	1	1	60	3R	27198865	27198884	CTGCTCAAGGTACTATCGTG		59	27198906	27198925	CTTGGTGGTATAGTCAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3669	FBgn0039838	FBtr0113313	2	1	1	86	3R	27085021	27085040	TATGGAGATATCGATGAGGC		58	27085089	27085397	GCGATTGGGATTCTTTACG		58	NA	
Drosophila melanogaster	50	CG1750	FBgn0039836	FBtr0085767,FBtr0085768	2	2	2	126	3R	27079897	27079915	GATCTGCATGCATCTTTGG		59	27079734	27079808	TAATCTTGGGAGCATAGCTG		59	NA	
Drosophila melanogaster	50	CG12054	FBgn0039831	FBtr0085758	2	1	2	80	3R	27047178	27051543	ACCCACATAGACTATGACC		57	27051587	27051605	CAGGACATAACTTAAGGGC		57	NA	
Drosophila melanogaster	50	Cog7	FBgn0051040	FBtr0085509	3	1	1	168	3R	25758179	25758256	ATGATCTAAAGGGAGTCTGTG		58	25758031	25758049	GTATTGCCTTCAGCAAAGC		59	NA	
Drosophila melanogaster	50	ATPsyn-gamma	FBgn0020235	FBtr0085541,FBtr0085540,FBtr0085539	2	3	3	77	3R	25574077	25574095	CAACACTAAGGTGTTCTGC		58	25574018	25574036	ACCATCAGGATGTTCTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dup99B	FBgn0024381	FBtr0089608	2	1	1	60	3R	25540973	25540991	GGAGTGGATCCAAAGTCAG		59	25540878	25540897	GTAGGGTCCTAAGTTTAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31041	FBgn0051041	FBtr0085470	1	1	1	69	3R	25416392	25416410	GTACAACGAGGACTTCACC		59	25416341	25416359	GTAGCTTGAGTCGATCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15817	FBgn0028476	FBtr0085395,FBtr0085396	1	2	2	80	3R	25057749	25057767	TAATTGCATCAGGGAAACG		58	25057811	25057895	GCTATGTATCCATTTGCGA		57	NA	
Drosophila melanogaster	50	CG11876	FBgn0039635	FBtr0085368,FBtr0085367	3	2	4	85	3R	24939870	24940162	TCGATCACGCAAAGATACTC		59	24940208	24940228	GCGTGGACTTTCAATTATGAG		59	NA	
Drosophila melanogaster	50	CG33346	FBgn0053346	FBtr0085306	2	1	1	60	3R	24495366	24495384	CGGAAATACGTTCATGGAG		58	24495408	24495426	ATACGCCTTCATGGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14264	FBgn0039512	FBtr0085165	3	1	1	83	3R	23166719	23166737	AGTCTTATGTACGCCTGTC		58	23166964	23166982	TAATGCGAGAGTGTAGGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mdh	FBgn0029155	FBtr0085110	2	1	1	125	3R	22981977	22982065	CCTACATTAAGACTCGCGA		58	22982154	22982172	ACGCTTGGAAGTAGTAGAG		58	NA	InUTR
Drosophila melanogaster	50	gb	FBgn0039487	FBtr0085132	3	1	1	120	3R	22935942	22935960	TACATCTCCCTACCTCTGG		59	22935589	22935858	TCTTATCGCCAAAGGTCAC		59	NA	
Drosophila melanogaster	50	CG33970	FBgn0053970	FBtr0100012	1	1	2	103	3R	22175803	22175821	ATCTGGGATCATTTGGTGG		59	22175888	22181332	AGTAGACCGATCATATGCG		58	NA	
Drosophila melanogaster	50	CG31091	FBgn0051091	FBtr0084941	1	1	1	189	3R	21727248	21727332	GAAGAACTAATTCGACCGC		58	21727485	21727503	GTGATTAGCTCAGTTGGGT		59	NA	
Drosophila melanogaster	50	CG5913	FBgn0039385	FBtr0084938	1	1	1	60	3R	21720018	21720037	TCCAATGAGATCATGGATCG		59	21720059	21720078	CCACTTTAAACTGATCCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst57Da	FBgn0011668	FBtr0084914	2	1	1	63	3R	21657557	21657575	CACTTTGCTGGTTGTTCTG		59	21657512	21657533	GACGTTGTGATTTGTATTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LpR1	FBgn0066101	FBtr0113480,FBtr0084925	2	2	6	156	3R	21575101	21577791	CTATAAATGAGGCCACTTGC		58	21573920	21573938	TATTCATCCGGTGAACAGG		59	NA	
Drosophila melanogaster	50	CG4774	FBgn0039360	FBtr0084931,FBtr0084929,FBtr0084930	3	3	3	81	3R	21512089	21512109	CGGATATGTTATAGTCCAGGG		59	21511697	21512046	TCCATCCAACAGATCTGTG		58	NA	
Drosophila melanogaster	50	CG5028	FBgn0039358	FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290	1	5	5	106	3R	21507753	21507830	AACTACGGTGACCATTACG		59	21507900	21507918	ATACTGGCACTGATCATGG		59	NA	
Drosophila melanogaster	50	Fur1	FBgn0004509	FBtr0089982	3	1	6	91	3R	21174051	21177846	GTGCTTAGAGTGCAATGAC		58	21173978	21173996	CTTGGAACTTGTCCAATGG		58	NA	
Drosophila melanogaster	50	veli	FBgn0039269	FBtr0084787	2	1	2	92	3R	20890641	20890659	GAATAATACCTGGAGGCGT		58	20890503	20890585	TTTCTCCTTCGACAGACAC		59	NA	
Drosophila melanogaster	50	CG31357	FBgn0051357	FBtr0084735	1	1	1	60	3R	20655020	20655039	TGGTGCATAGACAATAAGTC		57	20654979	20654997	TCAGGCTGAATTCAATGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33341	FBgn0053341	FBtr0084613	3	1	1	103	3R	20194861	20194879	AAGAGATTACTGCTGCCAC		59	20195002	20195022	AGGCGACTATATTCATCTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dms	FBgn0011581	FBtr0084607	3	1	1	88	3R	20168705	20168723	AGAACTCCGATCAACTGAC		59	20168838	20168856	CTTCAACAGGTCATCAGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG12268	FBgn0039131	FBtr0084513,FBtr0084514	1	2	2	93	3R	19769945	19769963	TTCTGCGTCATCTTCTTCC		59	19769812	19769891	GTTGGACATTGAGTAAGAATGG		59	NA	
Drosophila melanogaster	50	CG10214	FBgn0039115	FBtr0084463	3	1	1	64	3R	19592547	19592565	TCTTTCACGCATCGTAGTC		59	19592501	19592520	GCTTTGTAATACGCAAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6697	FBgn0027526	FBtr0084347	1	1	1	60	3R	18887478	18887496	GAGATATTCCGCAAGACAC		57	18887520	18887538	TGTACTTCAGGTTGAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17119	FBgn0039045	FBtr0084357,FBtr0084358	1	2	2	102	3R	18881579	18881597	TACTCGAAATCAGTCGGTG		59	18881430	18881515	GAACACATCCTTCACAATCTC		58	NA	
Drosophila melanogaster	50	CG17121	FBgn0039043	FBtr0084361	3	1	1	83	3R	18871191	18871263	GGCTCCTACATAATGACCAC		59	18871127	18871145	TAAGGCATTTACTGCCACC		59	NA	
Drosophila melanogaster	50	CG5798	FBgn0038862	FBtr0084016	1	1	1	80	3R	16962658	16962740	AGATTTGAGGTACGTTGTGG		59	16962783	16962801	ATGGTGAGGAATTCGTGTG		59	NA	
Drosophila melanogaster	50	CG5745	FBgn0038855	FBtr0084008	3	1	1	85	3R	16929821	16929841	GGATAACTACATCTTTGCCCA		59	16929888	16930316	GTAAGTTCACGTCAATGCG		59	NA	
Drosophila melanogaster	50	CG4562	FBgn0038740	FBtr0083859,FBtr0113250	2	2	2	90	3R	15695192	15695212	CGGACTGTTTATCGTATTTGC		59	15695061	15695140	TTTGTTCACCCAGTAGGAC		59	NA	
Drosophila melanogaster	50	CG18493	FBgn0038701	FBtr0083756	1	1	1	90	3R	15216464	15216482	CTGGTATGATATGGCCCAG		59	15216536	15216609	TGACATGGTTGATGTTGGT		59	NA	
Drosophila melanogaster	50	CG14303	FBgn0038633	FBtr0083659	1	1	1	97	3R	14471598	14471679	AGATAGTGCAGAACAACCC		59	14471737	14471758	GTTAGTATCGTAATTGCTGGTG		59	NA	
Drosophila melanogaster	50	CG12321	FBgn0038577	FBtr0083616	3	1	1	60	3R	14014301	14014320	TTCTAAAGGACAAGCGTACC		59	14014260	14014280	ATGCTCGGTATGATTACTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14323	FBgn0038529	FBtr0083498	3	1	1	63	3R	13447716	13447735	GATCATACAGGACCAGAACC		59	13447672	13447690	GACGAAACAAAGTACCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17562	FBgn0038449	FBtr0083329	1	1	1	74	3R	12442647	12442725	CATTAAGCGTTTAAAGCTGC		58	12442762	12442780	GACCACAGTGCTAGTAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333	3	6	8	188	3R	12119862	12122388	TAGCGAAACAACTTCTCCA		58	12122599	12122617	CCCGATATGGTATATGCCT		58	NA	
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083209,FBtr0083210,FBtr0083205,FBtr0083204	3	8	8	80	3R	11780339	11780357	TGGATCCTTCTTGTCATCG		59	11780398	11780482	GAGTCGAGAATGGTATTATCCT		58	NA	
Drosophila melanogaster	50	CG31296	FBgn0051296	FBtr0083155	1	1	1	69	3R	11356631	11356649	AATGGGTGTCTATATGCCG		59	11356521	11356539	ATCTGCCATCAGTAGTAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6118	FBgn0038339	FBtr0113240,FBtr0113239	2	2	2	93	3R	11249454	11249474	AGGTGAATGTCAAGTATGAGG		59	11249255	11249399	CTGTCCAGGTTCTTCTCTG		59	NA	
Drosophila melanogaster	50	CG6196	FBgn0038323	FBtr0083116	3	1	1	79	3R	11176180	11176199	AATCTAGGCATTAACAGCAC		57	11176120	11176139	TTCCTGTTCACTTCTATGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	FK506-bp1	FBgn0013269	FBtr0083120	1	1	1	114	3R	11158342	11158360	TCGCATCATGTTCTACACC		59	11158179	11158197	CAGCAAATTCTCGATCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	2	7	12	159	3R	11122418	11125004	GAAATACGATGAGGTTGCC		58	11126526	11126544	CTTCTCCTCAGAGACTTCC		58	NA	
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089960,FBtr0089968	1	2	12	196	3R	11121253	11125836	AGAAATACGAAGAGGTGGC		59	11127363	11127381	GATTTGCGTCTCAAAGGTC		59	NA	
Drosophila melanogaster	50	CG4285	FBgn0038310	FBtr0083061	3	1	1	105	3R	11080021	11080225	AATCGAAAGGTTGATGCCT		59	11080294	11080312	GTAAAGTCGGATTGCTTGG		58	NA	
Drosophila melanogaster	50	Hsc70-4	FBgn0001219	FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056	1	6	6	61	3R	11071531	11071549	GGTATCCTCAACGTGACTG		59	11071571	11071592	GTAATGGTGATCTTGTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	VhaPPA1-1	FBgn0028662	FBtr0083005	2	1	1	149	3R	10729040	10729060	GTCAAGATCCTTATTGTGGAG		58	10728590	10728608	TGATGATAATGGAGTGGCG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG3610	FBgn0038266	FBtr0082994	1	1	1	60	3R	10671628	10671649	CTAAAGGATGCAGTTACAAAGG		59	10671670	10671688	ATTGGTCTAGGGATTCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12207	FBgn0038220	FBtr0082922,FBtr0082921,FBtr0082923	2	3	3	153	3R	10126681	10126702	CCTTAACAAGATAGACAACACC		58	10127025	10127043	CTTGTAGGAGTTGTTCAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Or88a	FBgn0038203	FBtr0082890	3	1	1	84	3R	9936370	9936388	CAATATTGCCAGCGAACAC		59	9936435	9936510	CCAGCTGCATTATTTCAGTG		59	NA	Nonspecific
Drosophila melanogaster	50	Or88a	FBgn0038203	FBtr0082890	1	1	1	84	3R	9936370	9936388	CAATATTGCCAGCGAACAC		59	9936435	9936510	CCAGCTGCATTATTTCAGTG		59	NA	Nonspecific
Drosophila melanogaster	50	ninaB	FBgn0002937	FBtr0082820	1	1	1	87	3R	9527225	9527244	GGATAACTCGATGATTTCCA		57	9527293	9527369	GCAGGGATTTATTCTATGCA		57	NA	
Drosophila melanogaster	50	CG7381	FBgn0038098	FBtr0082727,FBtr0082726,FBtr0082725	3	3	3	83	3R	8795406	8795427	TCGATGACGAGGATATAAAGAC		59	8795254	8795362	TGCTGCCATACTTCTTCTC		59	NA	
Drosophila melanogaster	50	Arp87C	FBgn0011745	FBtr0082652	3	1	1	87	3R	8519472	8519558	CTCAAGATCAGGATCGCTG		59	8519608	8519627	TCTTGAAAGTATCGAGCGAG		59	NA	
Drosophila melanogaster	50	Hsp70Aa	FBgn0013275	FBtr0082512	1	1	1	60	3R	7781730	7781748	TTTCAAGGTTGTAAGCGAC		58	7781688	7781706	GGACTCACCCTTATACTCC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14721	FBgn0037942	FBtr0082430	2	1	1	176	3R	7561999	7562017	CAATGTCTTCCTGTTGAGC		58	7562156	7562234	TGTGCATGATATAGGTTCCA		58	NA	
Drosophila melanogaster	50	CG14713	FBgn0037928	FBtr0110809	1	1	1	60	3R	7496274	7496292	AACTGGATCACATGCAGAC		59	7496314	7496334	GCTATAATCACATTCACGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Csk	FBgn0086903	FBtr0082447,FBtr0082446,FBtr0082444,FBtr0082448,FBtr0082445	3	5	5	85	3R	7460836	7460854	AAATCAGACATGTGGAGCT		58	7460708	7460787	TCGGCTAATGGAATTCTGG		59	NA	
Drosophila melanogaster	50	CG14710	FBgn0037920	FBtr0082415	1	1	1	93	3R	7446857	7446937	CACCAATGCGAAATATGCA		59	7446994	7447012	TACACTTGTATGGACGGTC		58	NA	
Drosophila melanogaster	50	CG6783	FBgn0037913	FBtr0100323	1	1	3	210	3R	7390345	7390363	TACCTACACCCTGACTACC		59	7386919	7390171	GGGAATTAGGGTGATCAGC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG17230	FBgn0046225	FBtr0082392,FBtr0082393	2	2	2	66	3R	7291079	7291097	TTCAGTTTCCGAGACTTCC		59	7291127	7291145	CAGATTGGAGAACGAATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17184	FBgn0037884	FBtr0082364,FBtr0082363	3	2	2	93	3R	7059704	7059723	TTTATTTCGTCGGTGAACAC		58	7059279	7059648	CATCGAATTCGATTCTGGC		59	NA	
Drosophila melanogaster	50	CG6629	FBgn0037860	FBtr0082380	1	1	1	60	3R	6941070	6941091	CTGTCACTTTGAAAGTGATACC		59	6941031	6941049	TTTCGATCGTCATAAGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0082255	3	1	6	88	3R	6359719	6374338	ACATATGATGGACGATGGTG		59	6359650	6359668	ACTGAGGAATACAATCGCC		59	NA	
Drosophila melanogaster	50	Rrp46	FBgn0037815	FBtr0082248	3	1	1	235	3R	6239342	6239361	CTTGGAGTGTAACTACCGAC		59	6239614	6239635	CCGCAAAGCTATACTTTAAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34303	FBgn0085332	FBtr0112499	1	1	1	71	3R	5977110	5977128	ATGTTAATCACACCTGCCC		59	5976988	5977006	CATCTTCATCAGGAGACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11722	FBgn0037777	FBtr0082205	1	1	1	80	3R	5870896	5870916	CTCAATATGAAAGACTCCAGC		58	5870770	5870854	CACTCGCTTGATAAATCGA		57	NA	
Drosophila melanogaster	50	unc-115	FBgn0037733	FBtr0082096,FBtr0082097	2	2	4	100	3R	5515591	5516165	CTTAGCGAGATGCACTACC		59	5515509	5515527	TAGCTGTAGGTGTAGATGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12951	FBgn0037677	FBtr0082058	2	1	1	115	3R	5155292	5155375	GGGTCTCAATGATACTTATGGA		59	5155198	5155217	GATATTTGGGATCCGTTTGG		58	NA	
Drosophila melanogaster	50	CG16733	FBgn0037665	FBtr0081974	2	1	1	60	3R	5078184	5078202	AGGATCGTGTATACTGCTC		58	5078223	5078244	TGAAGTAGTGATAGTACGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0089783,FBtr0089784,FBtr0112822	3	3	8	118	3R	4664203	4664221	ATCTTTAGCACCCAGATCG		59	4660661	4664122	TCGTAGGGTACCTTAGACTC		59	NA	
Drosophila melanogaster	50	stck	FBgn0020249	FBtr0081845,FBtr0081846,FBtr0081844	1	3	3	71	3R	4184810	4184828	ACAGAGTTGGATTCCACTG		59	4184861	4184937	CAGTTCGTTCATATCGTTAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG18228	FBgn0037560	FBtr0081868	1	1	1	60	3R	4086818	4086837	AGAGGAGGTTGCTTTATTCG		59	4086777	4086798	ATATGACAGGATGGAAATCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17816	FBgn0037525	FBtr0113202,FBtr0081770	2	2	3	185	3R	3697537	3697555	GAGTATACAGATGGACGCC		59	3691467	3694093	CAACTCATGTAGAGTAGCCG		59	NA	
Drosophila melanogaster	50	alpha-Est3	FBgn0015571	FBtr0081545	2	1	1	102	3R	3365220	3365299	AAAGCGTACTGTGAGTACG		59	3365136	3365156	GATAGAGGTATGTGGAAGCAC		59	NA	
Drosophila melanogaster	50	SytIV	FBgn0028400	FBtr0081578	3	1	1	218	3R	3094840	3094921	ACCAAGAATGAGGTCATCG		59	3095103	3095121	TCACATGACTCCCATTTCG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG1105	FBgn0037465	FBtr0081645	3	1	1	149	3R	2890486	2890613	GTATCCTAATATACCGCCAC		57	2890356	2890375	GCTGTGGCATTATTAAACTG		57	NA	
Drosophila melanogaster	50	CG1162	FBgn0026564	FBtr0081669	3	1	1	71	3R	2580407	2580427	CCATAAACTGTCCAAATCGAG		59	2580356	2580374	TAATGCAATGAAAGCAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15177	FBgn0037461	FBtr0081700	2	1	1	114	3R	2454467	2454485	AAGAACACCGGAGTTATCG		59	2454321	2454390	TAAATTCAGTCATGTCCGCT		59	NA	
Drosophila melanogaster	50	CG15185	FBgn0037449	FBtr0081675	1	1	1	60	3R	2353722	2353743	GATACTATTAGCCATTCACCTG		58	2353764	2353782	TGTGATAACAGATTACGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12171	FBgn0037354	FBtr0078708	1	1	1	60	3R	1459486	1459504	CTCTTGGCTAAACTGGGAG		59	1459526	1459546	CGTTGAGCTTATCCAAATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hkb	FBgn0001204	FBtr0078951	1	1	1	85	3R	171348	171366	CGACCACTTAAAGAAGCAC		58	171281	171299	GGTATGAGTACATGGGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9780	FBgn0037230	FBtr0078960	3	1	2	289	3R	118387	118405	CGAAGATGTCCCTACAGAG		58	118043	118061	CGTAAGCATATGGTGATCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Qm	FBgn0024733	FBtr0070047,FBtr0070048	1	2	2	83	3L	23087936	23088013	GCTGATAGGCTTCAAACTG		58	23087871	23087889	AATGGGTTGACCAATACGA		58	NA	
Drosophila melanogaster	50	slif	FBgn0037203	FBtr0078555,FBtr0078556,FBtr0078557	1	3	3	82	3L	22885585	22885671	AATCTTTGCGTCCATAATGG		58	22885716	22885734	TGTATGCTAACAGGGTTCC		58	NA	
Drosophila melanogaster	50	CG33769	FBgn0053769	FBtr0091770	1	1	1	60	3L	22641441	22641459	GCTGTCCCATAAGAGAAGG		59	22641483	22641501	ACATTGTTCGCATCTAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7130	FBgn0037151	FBtr0078484	1	1	1	115	3L	22068662	22068680	GACGTCAAGAAGGGATACC		59	22068565	22068583	TCAAAGAGCACTTCGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7139	FBgn0027532	FBtr0078487,FBtr0078486	3	2	2	108	3L	22061080	22061098	TATTCATTATCACGGGCCG		59	22060933	22061008	TTAACTTCTTGCCATCGCA		59	NA	Nonspecific
Drosophila melanogaster	50	TyrR	FBgn0004514	FBtr0078479	1	1	1	144	3L	22056139	22056786	AAGGTTGCATACAGGTCTG		59	22056892	22056912	TCCTCAATGAACTGGTTAACC		59	NA	
Drosophila melanogaster	50	CG7414	FBgn0037135	FBtr0078441,FBtr0114593	1	2	2	82	3L	21819506	21819584	TAGCAATGGGTTCAAGGTG		59	21819630	21819648	TTCCCAACAATTCCTGACC		59	NA	Nonspecific
Drosophila melanogaster	50	Mkrn1	FBgn0029152	FBtr0078383,FBtr0078384	1	2	2	68	3L	21524869	21524890	CAGAGCCAGAATGAAATAATCG		59	21524638	21524656	ATAATCTCGCCGATCTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cpr78Ca	FBgn0037067	FBtr0078409	1	1	1	60	3L	21285636	21285657	GTTCAACTAATCCATTGTACGC		59	21285597	21285615	GGTAGTAGATGGTCCTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12983	FBgn0037040	FBtr0114616	3	1	4	96	3L	20959293	20959313	AACCATAGAAAGGGTACAGAG		58	20958844	20959235	ATTACGGGTAGCCTTATCC		58	NA	
Drosophila melanogaster	50	CG5872	FBgn0036991	FBtr0078194	1	1	1	84	3L	20430142	20430160	GTCATAGAGGAGAGTCCCA		59	20430208	20430367	TCGTGTTGTCTGTTCTCTG		59	NA	
Drosophila melanogaster	50	fat2	FBgn0036930	FBtr0074906,FBtr0100509	2	2	2	80	3L	20008038	20008057	CGCTATTGAACTGTTACGAC		59	20008099	20008174	TTTCCCATATCACTAACCGT		58	NA	
Drosophila melanogaster	50	CG7433	FBgn0036927	FBtr0074908,FBtr0074909	1	2	2	95	3L	19992456	19992474	CATAGCTCCGAAAGGACTC		59	19992275	19992400	TTCTGGTACCATATGAAGATGC		59	NA	
Drosophila melanogaster	50	Rpn1	FBgn0028695	FBtr0074893	2	1	1	60	3L	19909525	19909544	TGATACTTCTGTGGGATGTG		59	19909565	19909585	GTGGAGTACAAGTACTTATCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8533	FBgn0036907	FBtr0074877,FBtr0114601,FBtr0074878,FBtr0074876	2	4	4	183	3L	19794992	19795010	CATCTTCGACTACAAGCCT		59	19795205	19795275	TATGGTTCAGATGTGTCCAC		59	NA	InUTR
Drosophila melanogaster	50	HLH106	FBgn0015234	FBtr0074873,FBtr0074875,FBtr0074874	3	3	3	104	3L	19790267	19790285	TCTTCACGTACGATCTGAG		58	19790350	19790440	GCTCTCGATATTGCTTAATGAC		59	NA	
Drosophila melanogaster	50	tey	FBgn0036899	FBtr0074960	3	1	1	89	3L	19649972	19649990	AGGGATCACAGGATTACGA		59	19647007	19649921	TATGCAGATGTCTCAAATCCC		59	NA	
Drosophila melanogaster	50	CG8786	FBgn0036897	FBtr0074962	3	1	1	88	3L	19635049	19635067	CCATCTGTTTGCAAACCTG		59	19634304	19634999	CTTATAAGCAACACCCTTCAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG8798	FBgn0036892	FBtr0074967,FBtr0074968	3	2	2	83	3L	19603770	19603788	ATCTGTGCGATTTAGGAGC		59	19603647	19603725	GTTCTGGGATATCTGTTTCCT		59	NA	
Drosophila melanogaster	50	CG32214	FBgn0052214	FBtr0074929	1	1	1	63	3L	19460846	19460864	CTCTCCTTTGGCTTACTCC		59	19460891	19460909	TTAGATAAGGAGCGGTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075011	2	1	11	102	3L	19294146	19294164	CTGAGTGTCTCTTTGTGCA		59	19294010	19294081	TTAAAGGGTAGACAATCGGC		59	NA	
Drosophila melanogaster	50	CG14089	FBgn0036861	FBtr0075015	3	1	1	63	3L	19273877	19273895	GTCGAATCTGGAAGTTCTC		57	19273832	19273850	AAGAACAGACAGTAGTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14084	FBgn0036855	FBtr0074990,FBtr0074989	2	2	2	61	3L	19255134	19255152	AATGTGCTACATGTTCCTC		57	19255176	19255195	ACTTTAGGGTTATCCAGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11577	FBgn0036847	FBtr0075034	2	1	1	60	3L	19088831	19088849	GATCTGGGAATACCCTACG		58	19088789	19088807	TCTTCATTTGGGTGACCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3893	FBgn0036826	FBtr0075075	2	1	1	63	3L	18894431	18894449	TCCCATTTGATACCAGAGC		59	18894318	18894336	TAATGTTTCGATCCTCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5589	FBgn0036754	FBtr0075170	1	1	1	110	3L	17796349	17796367	TCGTACATTCATCGGATCG		59	17796196	17796275	TATTATAAGCGCGATGCCT		58	NA	
Drosophila melanogaster	50	CG34251	FBgn0085280	FBtr0112445	1	1	1	185	3L	17670664	17676046	ATGAGTTTCAGAGTGTGCC		59	17676195	17676213	TGTTGACCTCATAGCACTG		59	NA	
Drosophila melanogaster	50	CG7589	FBgn0036727	FBtr0075221	2	1	1	81	3L	17465633	17465714	CTGGAAAGACCATTTGAATACG		59	17465753	17465774	GCAGGAAGTACACATAAATACG		59	NA	
Drosophila melanogaster	50	Mo25	FBgn0017572	FBtr0075358	1	1	1	60	3L	16607530	16607549	CACAATTTCACCGTGATGAC		59	16607489	16607510	TCATCATTAGCTTGAGGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0112850,FBtr0075441	3	2	6	229	3L	16069528	16069546	AGACCAAATCACTGTCAGC		59	16069739	16070090	ACTGCCACTTTCATATCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	Eig71Ej	FBgn0014850	FBtr0075582	3	1	1	77	3L	15653890	15653908	GTAAGGCGTTGTGATATGC		58	15653767	15653785	TAGTCTAGCCACATTCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12355	FBgn0040805	FBtr0113333	2	1	2	103	3L	15487706	15487725	ACAATAGGAAGATATGCCGT		58	15486637	15486655	ATAACCTTAGTGGTGCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9311	FBgn0036448	FBtr0075700	2	1	1	83	3L	14764773	14764858	TGGATTCGATTCACCTATCG		59	14764709	14764727	GACTCATTGCCCTCTATCG		59	NA	
Drosophila melanogaster	50	CG9384	FBgn0036446	FBtr0075690	3	1	1	286	3L	14756184	14756202	GAAGAACATAGCTTTCCGG		58	14757032	14757050	ATCTTGAACATCGTTCGCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100039,FBtr0100040	1	2	6	93	3L	14193463	14193483	CGAACGATGGAAATAACAACC		59	14193538	14193847	TCGTCATCATCTTGAGGTG		59	NA	
Drosophila melanogaster	50	Hml	FBgn0029167	FBtr0075753	2	1	1	80	3L	13840915	13840990	AGATTGTGCTCCTACTTGTG		59	13841032	13841051	ATCTTAGAGCACTGACAGAC		58	NA	
Drosophila melanogaster	50	sens	FBgn0002573	FBtr0075862	3	1	1	83	3L	13390163	13390417	GTACATACATACCGGCGAG		59	13390098	13390116	ATATGCGTGATCAGGTTGG		59	NA	Nonspecific
Drosophila melanogaster	50	Or69a	FBgn0041622	FBtr0075901,FBtr0075902	3	2	2	117	3L	12957620	12957641	GTGCTACGAAACCTTATATGTG		59	12957461	12957479	TATTTAAGGGACCGCACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32106	FBgn0052106	FBtr0075947	2	1	1	93	3L	12768589	12768607	CATTTCGTATGAGCAGCAC		59	12768454	12768473	TGATTGGTATTGAGTCTGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	eyg	FBgn0000625	FBtr0100170,FBtr0075979	2	2	2	93	3L	12457475	12457496	AGTTCGACAAGAGTCATTATCC		59	12457192	12457421	GAGAACCACACCTGAACTC		59	NA	
Drosophila melanogaster	50	CG17144	FBgn0036267	FBtr0076015	3	1	1	60	3L	12200768	12200786	GCCATAGCCTCCAATAAGG		59	12200726	12200745	AGAGATTGCTATAGCTTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6272	FBgn0036126	FBtr0076234	1	1	1	60	3L	11090868	11090887	CTCTTAAGGTTCAGATCGAG		57	11090827	11090846	ATGATCAGATCTCTAAGCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7949	FBgn0036107	FBtr0076270	2	1	1	60	3L	10876254	10876272	TTAATGACCCGGAACATCC		59	10876296	10876314	ATTAGATCTTCCTGCACCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32036	FBgn0052036	FBtr0114525	2	1	1	82	3L	9481436	9481454	CGATTGGTGGTACAATGTC		58	9481312	9481330	GAATGTAGGGATTGTGCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Uba2	FBgn0029113	FBtr0076734	2	1	1	93	3L	8120385	8120459	GTAACATCTACTGATTATGGCG		58	8120313	8120332	GATTTACATGATTCCTGGCG		59	NA	
Drosophila melanogaster	50	CG32365	FBgn0052365	FBtr0076746	1	1	1	146	3L	7883367	7886344	TTGAAACAGACCGAAACCA		59	7886454	7886472	ATGATGCAGACTCTTGGAG		59	NA	Nonspecific
Drosophila melanogaster	50	bhr	FBgn0082598	FBtr0076849,FBtr0076848	3	2	2	132	3L	7365499	7365517	GAGAATCAGCTAAGGGAGC		59	7365613	7365692	TTTACGACAGGTAGCTAGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32390	FBgn0052390	FBtr0076924	3	1	1	66	3L	7137429	7137447	AATTGCCATGTAACCACCA		59	7137381	7137399	GCTGGTCAGGATTATTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dbi	FBgn0010387	FBtr0076915	3	1	2	240	3L	7125756	7125774	CTAACCCAGAATGGTTTCC		57	7126419	7126437	AAAGGTGATGTACTCCTGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14823	FBgn0035734	FBtr0076908,FBtr0076905	2	2	4	190	3L	7060746	7060764	TGCCACGGATAATATTCCG		59	7061142	7061160	CATAGCTACGCACAATACG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Usp36	FBgn0035633	FBtr0077104,FBtr0077103,FBtr0077099,FBtr0077100	1	4	6	83	3L	5765468	5765543	AGAAGAAGGTATCTGCCAC		58	5765590	5765608	TCATGGAGAATCGCTTCAG		59	NA	
Drosophila melanogaster	50	DnaJ-1	FBgn0015657	FBtr0077124,FBtr0077123	1	2	2	60	3L	5744665	5744686	AAGACTTCTACAAGATTCTGGG		59	5744626	5744644	GCCTTCTTGATCTCATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32259	FBgn0052259	FBtr0073206	3	1	1	101	3L	4070066	4070084	ATCATGTCGAAAGTCGTCC		59	4070149	4070412	GTTGAACTGGGCTTTATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14977	FBgn0035469	FBtr0073158	3	1	1	62	3L	3897188	3897206	ATCACCATCGATTACGAGC		59	3897229	3897250	GATGTATATTCTACGGTTGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10858	FBgn0035458	FBtr0073190	3	1	1	160	3L	3754176	3754194	CATTCGAGTTTAGAACGCA		58	3751222	3753050	AATCACAGAGGAAATCGCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10359	FBgn0035452	FBtr0073136	3	1	2	156	3L	3613874	3614079	AGCTTAAAGATATCTCGCG		57	3614199	3614217	ACAGATCTGACACTGAGAG		57	NA	
Drosophila melanogaster	50	CG10359	FBgn0035452	FBtr0073136	1	1	2	154	3L	3613875	3614080	GCTTAAAGATATCTCGCGC		58	3614198	3614216	CAGATCTGACACTGAGAGC		59	NA	
Drosophila melanogaster	50	dro5	FBgn0035434	FBtr0073062	1	1	1	90	3L	3316846	3316864	GTTCCTGTACCTCTTCCTG		58	3316918	3316936	TCCTCCGTATCTTCCAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11486	FBgn0035397	FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996	1	6	15	80	3L	3083796	3085208	TCGCCACTTATATGGTCAC		59	3085252	3085270	ATGGTGCATAGAAGTTGGG		59	NA	
Drosophila melanogaster	50	dos	FBgn0016794	FBtr0072926,FBtr0072927	1	2	2	92	3L	2593243	2593264	CGCGTAGTCATAATAACATAGG		58	2593317	2593403	TATTGGCCAATTGTTGCAG		58	NA	
Drosophila melanogaster	50	oxt	FBgn0015360	FBtr0072904	3	1	1	118	3L	2261463	2261482	GAGCACGTTTACTACATCCA		59	2261019	2261037	CATATGGTGGAGAATCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1275	FBgn0035321	FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906	3	4	4	139	3L	2253685	2253787	GTATGGCAACTCCATTCTG		58	2253564	2253582	AGTTGTGGGAATCGAAGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	sls	FBgn0086906	FBtr0072848,FBtr0072849	2	2	2	101	3L	2091321	2091339	AGTTTAAGACGACGGTGAC		59	2091120	2091257	CGAAGATCATCTGGAAGTCC		59	NA	
Drosophila melanogaster	50	CG7967	FBgn0035251	FBtr0072809	2	1	1	73	3L	1652364	1652382	GAAACTATTCCTGTACGCC		57	1652242	1652260	AGTAGAAGGCCTTAACGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12090	FBgn0035227	FBtr0072703	3	1	3	149	3L	1528071	1529118	AAGATCATCATAGGCGTCG		59	1527940	1527960	GTAATCGTGATTCACATCGTC		59	NA	
Drosophila melanogaster	50	CG9186	FBgn0035206	FBtr0072727,FBtr0072728	3	2	2	70	3L	1312824	1312842	AGACCATAACCGAGAAGGA		59	1312772	1312790	CTCTGTGTAGAAACCTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Aplip1	FBgn0040281	FBtr0072627	1	1	2	248	3L	1197306	1197520	CAAGAAATCTTCCATTCTGC		57	1197731	1197749	ATGCTCTTAAAGTCGTTGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	MED14	FBgn0035145	FBtr0072554	1	1	2	158	3L	593650	593733	CTGGCTGAACTATTACCAC		57	593855	593873	GAAGCTCATTATCTGCGAC		58	NA	
Drosophila melanogaster	50	klar	FBgn0001316	FBtr0072565,FBtr0112808,FBtr0110818	2	3	4	80	3L	444288	444306	CTCGGAGAACTATTCCGAG		58	444136	444245	ATGAAATTGCGATAGTCGTC		58	NA	
Drosophila melanogaster	50	mthl9	FBgn0035131	FBtr0072574	1	1	1	80	3L	330980	331058	AGAAACATAGGATTTCTGGC		57	330919	330937	GAGCAGAAAGTCAAGACTG		58	NA	
Drosophila melanogaster	50	pyx	FBgn0035113	FBtr0072525,FBtr0072524	1	2	2	104	3L	219642	219727	AAATGTTCACAAAGGTGGC		59	219556	219576	GATAATCATTGAAGAGCACGG		59	NA	
Drosophila melanogaster	50	5SrRNA:CR33419	FBgn0053419	FBtr0086411	1	1	1	62	2R	15629368	15629386	AATACATCGGTTCTCGTCC		59	15629324	15629342	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Phk-3	FBgn0035089	FBtr0072404	3	1	1	60	2R	20858731	20858749	AAGTACGACAGTGTCAACG		59	20858689	20858709	GATAATTACCCAACACTCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30424	FBgn0050424	FBtr0113375,FBtr0113377,FBtr0113376	1	3	3	97	2R	20853307	20853382	ACTTCGGGAATTCAGTCAC		59	20853228	20853246	TTGAAGTGGTCTTCAGTCC		59	NA	
Drosophila melanogaster	50	CG30169	FBgn0050169	FBtr0072302	3	1	1	67	2R	20414642	20414660	GGCAGACACTATTTATGGC		58	20414691	20414768	TTCCACTTTCCAATCGGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG16837	FBgn0035009	FBtr0072297	2	1	1	62	2R	20363004	20363024	GTTCGAGGTTATCAGTAACTG		58	20363048	20363066	TAACCGCCTTCTTTACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4049	FBgn0034976	FBtr0072285	1	1	1	103	2R	19997350	19997434	GGATTTATAGATACGGTCAGAC		57	19997268	19997286	TCCTTGTTTCTTGATCTGC		57	NA	
Drosophila melanogaster	50	enok	FBgn0034975	FBtr0072250	2	1	1	67	2R	19993167	19993185	TAAGTAATCCACAGCACCA		58	19993280	19993298	TGAGCTAACTGCAATGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3825	FBgn0034948	FBtr0072204	2	1	1	60	2R	19863712	19863731	AAATACCGAGGAGCTAAAGG		59	19863671	19863689	CTTCTTGACAGGAGTCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	3	8	8	81	2R	19817553	19817571	GGATATCATGGAGAAGCCC		59	19817426	19817508	TCCAATAGCCATGTAACGG		59	NA	
Drosophila melanogaster	50	angel	FBgn0016762	FBtr0072083	1	1	1	76	2R	19582127	19582145	TCCTCAAAGTTTGAGTTGC		58	19582185	19582203	TTGTCGCGATTGAGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30183	FBgn0050183	FBtr0072099	2	1	1	118	2R	19580473	19580491	AGAACCGGAATCTTTCTCG		59	19580315	19580392	GGAAGTATTATTGGGCACCT		59	NA	
Drosophila melanogaster	50	Pal	FBgn0020623	FBtr0089502,FBtr0089501,FBtr0089500	1	3	3	162	2R	19576615	19576633	TTACTGGATCACGGATGTG		59	19576820	19576900	GATGAAGAACTCTCCGGTG		59	NA	
Drosophila melanogaster	50	CG30290	FBgn0050290	FBtr0071672	3	1	1	92	2R	17579804	17579823	CATAGATCTAGGCAAGTGGG		59	17579877	17579953	ATATTATCGCAAATCCCGGT		59	NA	
Drosophila melanogaster	50	CG10543	FBgn0034570	FBtr0071524,FBtr0071523,FBtr0071525	2	3	3	139	2R	16891581	16891599	CTGCAACTATTGCGATCAG		58	16891759	16891843	AGCTACCCATATCTTCTTCG		58	NA	
Drosophila melanogaster	50	CG13426	FBgn0034510	FBtr0086295	1	1	1	60	2R	16400297	16400316	CTTATCATGGGCTTGATTGG		58	16400256	16400277	TGATGTTGACTATGGGTATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED8	FBgn0034503	FBtr0086297	1	1	1	67	2R	16213942	16213960	ATCAACATCACAGAGGGTC		58	16213893	16213912	CGAGTTCTCAAATAGTCTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr56F	FBgn0034499	FBtr0086301	1	1	1	132	2R	16176617	16176635	TTCAAGTACGACGTACAGG		59	16176503	16176521	CCTCGTACTCAACAATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16894	FBgn0034483	FBtr0086324	2	1	1	60	2R	16099484	16099504	CTGAATACATCAAACGAGTCC		58	16099444	16099464	CGGTCGTAGATAAGATTTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15086	FBgn0034374	FBtr0086651,FBtr0086649,FBtr0086650,FBtr0086648	3	4	4	61	2R	14567638	14567657	GGATCCTTACTACCAACGAG		59	14567540	14567558	TGCATGATCCGTAGTTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33724	FBgn0053724	FBtr0091722	2	1	1	61	2R	14528064	14528083	CAATCGCTACTACATTTCCT		57	14528107	14528125	CGGTAGTGGGTAAATTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	imd	FBgn0013983	FBtr0086725	3	1	1	174	2R	14298397	14298415	CATGATGCAGTCACAAGAG		58	14297824	14298260	CAGCTGGTATATCACCTCTC		59	NA	
Drosophila melanogaster	50	CG10916	FBgn0034312	FBtr0086749	3	1	1	60	2R	14061967	14061986	GTCTTTACCAGGGTATCCTG		59	14062009	14062027	ATGTACATGACCTTGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14492	FBgn0034283	FBtr0086818	1	1	1	60	2R	13781398	13781418	GAATATCATGGAGCGTTTCAG		59	13781358	13781378	GGTAAAGTTTGGCTTGAAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5033	FBgn0028744	FBtr0089551,FBtr0089550	2	2	2	81	2R	13679635	13679718	ATGGTCTATAATGACCTGCTG		59	13679761	13679779	CAAACTCATCGCGTTTCTC		59	NA	
Drosophila melanogaster	50	Sema-1b	FBgn0016059	FBtr0086890,FBtr0086891	1	2	2	85	2R	13565383	13565401	TTTATAGGCAACTCGACGG		59	13564084	13565334	TTGTAGATGACGTCCTTGG		58	NA	
Drosophila melanogaster	50	l(2)k07824	FBgn0022070	FBtr0087170	1	1	1	60	2R	12234077	12234098	CTGTGAAACCATTCTACTACTC		58	12234038	12234056	AGCTTTAGCTTCGATTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15704	FBgn0034103	FBtr0087136	3	1	1	99	2R	12167619	12167638	CGATAGATAGCTCAGCTGAG		59	12167700	12167718	CACTCCCAAGTACAGACAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Khc	FBgn0001308	FBtr0087184	1	1	1	87	2R	12157150	12157306	TGTGACAAACATGAACGAG		58	12157081	12157099	TTTCTTCTGGTTCTCCAGG		58	NA	
Drosophila melanogaster	50	CG8443	FBgn0034087	FBtr0087242	2	1	1	97	2R	12079642	12079661	TGGGAATGTCTCTTAAGCTG		59	12079720	12079801	GATGTTGCTATCGATCAGTG		58	NA	
Drosophila melanogaster	50	sli	FBgn0003425	FBtr0087304,FBtr0087302,FBtr0112831	3	3	5	138	2R	11773781	11773799	GACCGTGATATACGAGACG		59	11772978	11773607	ATTGTTGGAGATGTCCAGTC		59	NA	
Drosophila melanogaster	50	fus	FBgn0023441	FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343	2	4	6	110	2R	11555363	11559507	CAACTGGACAGATCGTAGG		59	11555271	11555290	TGTTATTGGTGACACTCGAG		59	NA	
Drosophila melanogaster	50	CG8468	FBgn0033913	FBtr0087534,FBtr0087533,FBtr0087532	3	3	3	73	2R	10116746	10116764	GGATTCCTGATGCTCTTCC		59	10116918	10116936	GTCATCACATAGAGGCCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	RN-tre	FBgn0020620	FBtr0087605	1	1	3	108	2R	9876011	9876030	AGCAAGTCATAACAGATGTG		57	9874961	9875880	ATTGAGTATCCATCACCCG		58	NA	
Drosophila melanogaster	50	CG6543	FBgn0033879	FBtr0087643,FBtr0087644	2	2	2	168	2R	9740744	9740762	TTAACACGGCTTACGAGAC		59	9740529	9740547	CTGGCTGGGATTGATTAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG17034	FBgn0033837	FBtr0087708	3	1	4	95	2R	9306558	9306576	TGTTTAAGACACTGACGGA		58	9303452	9306499	TTTCCGTGAATGAAGATCG		57	NA	
Drosophila melanogaster	50	Nrk	FBgn0020391	FBtr0087728	2	1	1	113	2R	9048799	9048876	ATATACCCATGTGTCCGGA		59	9048953	9048971	AACCTATTCCAGCCAAGAG		58	NA	
Drosophila melanogaster	50	Nrk	FBgn0020391	FBtr0087728	3	1	1	114	2R	9048799	9048876	ATATACCCATGTGTCCGGA		59	9048953	9048972	AAACCTATTCCAGCCAAGAG		59	NA	
Drosophila melanogaster	50	CG3814	FBgn0025692	FBtr0087814,FBtr0087813	3	2	2	138	2R	8763437	8763613	TATTGATGTGCCAATTGCTG		59	8763256	8763274	ATACAGATCATGGTCACGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	Nacalpha	FBgn0086904	FBtr0087860,FBtr0087858,FBtr0087859	1	3	3	69	2R	8647772	8647790	GAAGATCATGCTGAAGCTG		58	8647721	8647739	CTTCGACTTCCTGATCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL18	FBgn0026741	FBtr0087852	2	1	1	78	2R	8644140	8644158	GAATACGTGATCAACCGGA		59	8644199	8644218	TCTCCAGATGATAGCCTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	stil	FBgn0003527	FBtr0087825	1	1	1	84	2R	8458650	8458668	CTCGAAGATTCCACTTCAG		57	8458716	8458852	AGATGTTTGAGACGTTCTG		57	NA	
Drosophila melanogaster	50	CG13168	FBgn0033705	FBtr0087998,FBtr0087999	3	2	2	98	2R	8142679	8142697	GATGACCAAGAAGCATCTG		58	8142809	8142829	CTGGTATCGTACTTCTTAAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8862	FBgn0033690	FBtr0088012	2	1	1	60	2R	8065823	8065841	CACCTTTGGAACTGTTTCG		59	8065781	8065802	CAAGCTTACATTGTTCTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8321	FBgn0033677	FBtr0087975	3	1	1	99	2R	7923203	7923286	GTTCCAAGAAACGTTTCCG		59	7923348	7923367	AAGTACATGAAGACCGTGAC		59	NA	
Drosophila melanogaster	50	S2P	FBgn0033656	FBtr0088063	1	1	1	113	2R	7730976	7730995	ACTACATCACAACCCTTGTG		59	7730815	7730903	GGCAGAAGATGAACTTTATTCC		59	NA	
Drosophila melanogaster	50	en	FBgn0000577	FBtr0088095,FBtr0088096	2	2	2	255	2R	7413974	7413992	GAGATTCCGGAATGGAGTC		59	7412324	7412342	GTCAGATAGCGATTCTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13213	FBgn0033609	FBtr0088180,FBtr0088178,FBtr0088179	1	3	3	80	2R	7174159	7174232	CAGGAAATTATGGACTCACCT		59	7174099	7174118	TATGATGCGGGATTCATCTG		59	NA	
Drosophila melanogaster	50	CG9062	FBgn0033607	FBtr0088181	1	1	1	80	2R	7169386	7169475	GTCATCTTTAGTGAAGTGGGT		59	7169326	7169344	CAGGGTACTTTCGCTATCG		59	NA	
Drosophila melanogaster	50	CG18004	FBgn0033566	FBtr0089729,FBtr0089728	1	2	3	80	2R	6773587	6773605	CTATTGAGTCCGGAATGCA		59	6773647	6773725	ATTGGGATAACACTTAGAGGG		58	NA	
Drosophila melanogaster	50	CG18004	FBgn0033566	FBtr0089729,FBtr0089728	1	2	3	80	2R	6773587	6773605	CTATTGAGTCCGGAATGCA		59	6773647	6773725	ATTGGGATAACACTTAGAGGG		58	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089342,FBtr0089349	2	2	26	187	2R	6419759	6419778	TTGAGGATTTGACACTGGAC		59	6408769	6419548	GTCGTACTTCAGGTCTTGG		59	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	1	9	9	149	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349137	6349157	GACAGCATCGAATACAAACTG		59	NA	
Drosophila melanogaster	50	Prx2540-1	FBgn0033520	FBtr0088261	1	1	1	104	2R	6312548	6312629	CAACGTTGACGAGATTCTG		58	6312760	6312778	ATCATGACCTTAGTGCCAG		59	NA	Nonspecific
Drosophila melanogaster	50	Gr47a	FBgn0041242	FBtr0088352	3	1	1	60	2R	6249974	6249993	ACACATGTCCTATAGCACTG		59	6250016	6250034	ACCAATCGTCAGAACAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	2	9	9	91	2R	5738884	5738970	GAAGCCGTTAAGGAGATCC		59	5738811	5738829	ATATCGATGACAGTTCCGG		58	NA	
Drosophila melanogaster	50	CG8029	FBgn0033393	FBtr0088587,FBtr0088588	2	2	2	212	2R	5095662	5095680	CAAGACCTACTACACCAGC		59	5095928	5095946	TTGCTGATAGCAGCTATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8046	FBgn0033388	FBtr0088620	3	1	2	182	2R	5051972	5052051	GAAACAAAGAGAATTGAGGAGC		59	5051755	5051773	AATGAGATACTGAAGGCCG		59	NA	
Drosophila melanogaster	50	stmA	FBgn0086784	FBtr0088715,FBtr0100111,FBtr0088716	3	3	3	114	2R	4618187	4618266	TGTTTATCCTCGGAATCCAG		59	4618092	4618110	CTAACACGCGAGATTAGCA		59	NA	
Drosophila melanogaster	50	CG2906	FBgn0033240	FBtr0113051,FBtr0113052	2	2	2	80	2R	3845209	3845283	GACGTTTCACCAATATTTCCAG		59	3845323	3845342	TGCTGGTTACTTAGAGTTCG		59	NA	
Drosophila melanogaster	50	CG18812	FBgn0042135	FBtr0088936,FBtr0088935	3	2	3	189	2R	3607496	3613207	GAGCATCAGGAAAGATACGA		59	3607264	3607285	GCTTAATCAGATATAGCAAGGC		59	NA	
Drosophila melanogaster	50	CG18812	FBgn0042135	FBtr0088936,FBtr0088935	1	2	3	185	2R	3607493	3613203	ATCAGGAAAGATACGAGCG		59	3607264	3607285	GCTTAATCAGATATAGCAAGGC		59	NA	
Drosophila melanogaster	50	CG1845	FBgn0033155	FBtr0089021	2	1	1	206	2R	3162388	3162602	CATCAATAGAAGAACCGCC		58	3162200	3162218	GACAGGACGTGATTCAGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	vimar	FBgn0022960	FBtr0086183,FBtr0086182	3	2	2	160	2R	2865101	2865208	TCCTTACTGGTGATGACTC		57	2864959	2864977	CTCCACAAAGTAGATGCAG		57	NA	
Drosophila melanogaster	50	scarface	FBgn0033033	FBtr0086061,FBtr0086060	3	2	2	136	2R	1566837	1566856	CATTATCCGACTCGAAAGAC		58	1565503	1566741	CCTCTTCATGTATAGATAACGC		58	NA	
Drosophila melanogaster	50	CG30437	FBgn0050437	FBtr0086065	1	1	3	115	2R	1328564	1341070	TAGTCGATGAAGTTGTGCC		59	1341149	1341167	GTATTCGGGAGGAATGTCG		59	NA	
Drosophila melanogaster	50	snRNA:U2:34ABc	FBgn0041720	FBtr0091789	1	1	1	61	2L	13244528	13244549	CCTTATGGCTAAGATCAAAGTG		58	13244488	13244509	GAGGAACTATCAGATGTTAAGC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17490	FBgn0040009	FBtr0111256,FBtr0111258	2	2	4	180	2L	22433045	22440281	CATACAATAATGAGAAGGTGGG		58	22440422	22440440	CTCATATAGTCAGCGGGTG		59	NA	InUTR
Drosophila melanogaster	50	CG2225	FBgn0032957	FBtr0085918,FBtr0085914,FBtr0085915	3	3	5	114	2L	21671386	21672303	CTAAGTCGCAAGAACATGTC		58	21671291	21671309	TTAGATTCTCAGCCGTACC		58	NA	
Drosophila melanogaster	50	l(2)k14505	FBgn0021856	FBtr0081482	1	1	1	113	2L	21261706	21261781	TCTTCCAGTACGATGACGA		59	21261858	21261876	TGTTCATGGTCTTCTGCAG		59	NA	
Drosophila melanogaster	50	CG9257	FBgn0032916	FBtr0081465	2	1	1	60	2L	21103556	21103575	TCAAGGGAGATATCTCCCAG		59	21103598	21103616	TTAATCCTCTCAGTCGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33317	FBgn0053317	FBtr0089856	1	1	1	72	2L	20901387	20901405	AAGCCGACAAAGATTACCC		59	20901441	20901459	CTTTGTTACGATAGCGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Oseg5	FBgn0032891	FBtr0081451	1	1	1	80	2L	20834581	20834715	GAGAAAGATTACCTTCTGTGGT		59	20834522	20834541	CCAGGAGAGGTTGAATATGG		59	NA	
Drosophila melanogaster	50	vls	FBgn0003978	FBtr0081347	1	1	1	95	2L	20064569	20064641	CAGTTATTAATCAATGGGCCC		59	20064494	20064512	GTAGATGAACTCATGGCCC		59	NA	
Drosophila melanogaster	50	CG10628	FBgn0032818	FBtr0081323	1	1	1	106	2L	19758029	19758047	AATAGCAGATGTGGGTCTC		58	19757883	19757959	TGGTGGTAAAGGGATAAGC		58	NA	
Drosophila melanogaster	50	CG10263	FBgn0032812	FBtr0081265	3	1	3	215	2L	19581472	19581490	ATCAATCACAGACATGTGG		57	19581169	19581190	CGGTATACTACCAATACTACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10237	FBgn0032783	FBtr0081207,FBtr0081209,FBtr0081208	3	3	3	93	2L	19437120	19437677	GTCTTCTAGAAGCGGAGAC		59	19437045	19437063	CTTTCCGGGTAATACTTGC		58	NA	
Drosophila melanogaster	50	brat	FBgn0010300	FBtr0081159,FBtr0081158	1	2	3	124	2L	19166350	19168104	GCAGTAAAGCTGTTACTCC		58	19168192	19168210	TACGATTCAATCGAGTTCG		57	NA	InUTR
Drosophila melanogaster	50	CG10700	FBgn0032754	FBtr0081171	3	1	1	60	2L	19077845	19077866	GGAGTGGTATAAACATCAATCC		58	19077806	19077824	TTAGTCTGCAGAAAGTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6412	FBgn0032646	FBtr0080994	3	1	1	64	2L	17499589	17499607	AATATGACAAGGACAAGCC		57	17499543	17499561	ATACTCCTGGTGAATCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0080978,FBtr0080977	2	2	6	143	2L	17394476	17398601	CAATTCGGCTTATACAGATCTC		58	17398705	17398860	TAATCATAAGATGCGCGAC		57	NA	
Drosophila melanogaster	50	beat-IIIa	FBgn0032627	FBtr0080961	3	1	1	191	2L	17170065	17170143	ATGAAGTTAAAGTGCGTGG		58	17170297	17170316	AATATTAGCTAGGCGTTCCT		58	NA	
Drosophila melanogaster	50	CG15136	FBgn0032625	FBtr0080954	3	1	1	62	2L	17047431	17047449	ACTGGAGTTTGACGAAGTC		59	17047387	17047405	CCTAGCTTGGGATCATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080898,FBtr0080895,FBtr0080904,FBtr0080899	1	4	13	91	2L	16769208	16769226	AAGATATGGCCGACATGAC		59	16769281	16770465	GGAGTAGGTGTAGATGAGC		58	NA	
Drosophila melanogaster	50	Idgf1	FBgn0020416	FBtr0080860	1	1	1	60	2L	16445564	16445585	TGTTCTACTACAAGGACATCAC		59	16445605	16445624	AGGAGAATCTTCAGTTGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CaBP1	FBgn0025678	FBtr0080837	1	1	1	61	2L	16355998	16356016	TGATGTCATCGAACTCACC		59	16355955	16355973	ATATGTCGTCGGAGTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gli	FBgn0001987	FBtr0080769,FBtr0080765,FBtr0080768,FBtr0080767	3	4	5	84	2L	15760332	15760410	GGATTACAGAACCTACACGT		59	15760267	15760286	ATTTCTGCCTGGATAGTTGG		59	NA	
Drosophila melanogaster	50	Ance-3	FBgn0032536	FBtr0100327	2	1	1	95	2L	13916555	13916632	ATTGGATAGGTATAATCGCCTG		59	13916688	13916706	TGAAGATCGCACTGAAAGG		59	NA	
Drosophila melanogaster	50	CG9932	FBgn0032469	FBtr0089956	2	1	1	100	2L	13029631	13029734	GCCAAAGACGTATTAAACCT		58	13029550	13029569	ATCTCCGAGATCTGTTTCTC		58	NA	
Drosophila melanogaster	50	ACXC	FBgn0040508	FBtr0080413,FBtr0100494	2	2	2	80	2L	12914444	12914464	GCCAAGTCAATCATCAATGAC		59	12914503	12914634	GGTGAGTTTAAGTTAATGCCAC		59	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090023,FBtr0090018	1	2	17	196	2L	12726933	12726951	TATATCAAGAGCGTTGGCA		58	12727111	12729197	AAGTACGAGGTAACTTGGC		59	NA	
Drosophila melanogaster	50	bru-2	FBgn0043904	FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351	2	4	4	138	2L	12385726	12389193	ATTGGAGCTATAAAGGCCC		59	12389295	12389313	TATTGATGCCACAGAATGC		58	NA	
Drosophila melanogaster	50	bru-2	FBgn0043904	FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351	2	4	4	138	2L	12385726	12389193	ATTGGAGCTATAAAGGCCC		59	12389295	12389313	TATTGATGCCACAGAATGC		58	NA	
Drosophila melanogaster	50	CG16996	FBgn0032412	FBtr0080334	2	1	1	60	2L	12109968	12109987	CGTACTTCGTGATCAATGAC		58	12110009	12110028	ATCATTCCGATGTCATAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5322	FBgn0032253	FBtr0080042	2	1	1	84	2L	10454855	10454968	GGACAAACTTATCAAGTACGTC		59	10454792	10454810	AAGATAACACGAGGGTGTG		59	NA	
Drosophila melanogaster	50	CG33303	FBgn0053303	FBtr0080052	3	1	1	61	2L	10374454	10374472	CAATTTGGTCGAAAGCCAC		59	10374411	10374430	TAGAAGTCTTCGAGAAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13124	FBgn0032156	FBtr0079902,FBtr0079903	3	2	2	98	2L	9903932	9904013	ACTTTCAGAGATTGAGTGCT		58	9903853	9903872	ACCAGACTCATGAGTAACTC		58	NA	
Drosophila melanogaster	50	jp	FBgn0032129	FBtr0113030,FBtr0079861,FBtr0079860	2	3	3	86	2L	9549654	9550211	AGGTTAAGGACTGGTTTGTG		59	9549587	9549607	GCATGTAGACAAATAGAAGCG		59	NA	
Drosophila melanogaster	50	CG9525	FBgn0032080	FBtr0079786	3	1	1	60	2L	8961802	8961821	GGCAGAGGATCTACAATCAG		59	8961761	8961780	TGGTGCATATGTCTTAGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9510	FBgn0032076	FBtr0100480,FBtr0100481	3	2	2	83	2L	8940309	8940327	CCTACAGACGATTCAGGTC		59	8940187	8940262	AGATAGTAGGCCCAGTCAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG12438	FBgn0032065	FBtr0079732	2	1	1	60	2L	8752952	8752970	TACATCAGCTTCGAGTACC		58	8752994	8753012	TATAGAGCACTATGGCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9289	FBgn0032058	FBtr0079751	2	1	1	61	2L	8682131	8682149	GATGTTAAGAATGGCACCT		57	8682019	8682106	ATAGTGCTGCAAAGATCGA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Chrac-14	FBgn0043002	FBtr0100267	3	1	2	78	2L	8440913	8440931	AAAGACTGTAGATCCGGAG		58	8441065	8441083	CTGCAGTTCTTCTGAGGTC		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG31901	FBgn0051901	FBtr0079607	1	1	1	81	2L	8354738	8354756	AGCACTTCAACTTCTTCCC		59	8354801	8354892	AACCACGGTTTAACTCTCC		59	NA	
Drosophila melanogaster	50	Snx6	FBgn0032005	FBtr0079631	1	1	1	105	2L	8218498	8218581	TTTCAAGAAGAGCCTCGTC		59	8218411	8218429	TCAGGCAATCTCTTTGAGC		59	NA	
Drosophila melanogaster	50	CG31606	FBgn0051606	FBtr0079578,FBtr0079577	3	2	2	60	2L	8148004	8148022	CCAACTCTAGTCGGATCAC		59	8148045	8148064	GGAAATGGTTTAGAGGTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Snoo	FBgn0085450	FBtr0112719,FBtr0112721,FBtr0112718	1	3	5	105	2L	7975255	7975273	CCAGATCATCCTCGATCAG		59	7896734	7896752	GTCATCCATGAGCATTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7144	FBgn0025687	FBtr0079495	1	1	1	110	2L	7793320	7793516	TTCAGTCGGCTATTATCGC		59	7793228	7793246	AACTTCCCTCCATCTTGTG		59	NA	
Drosophila melanogaster	50	CG14538	FBgn0031943	FBtr0079484	1	1	1	60	2L	7756733	7756751	TCCCATCATTGTCATCCAG		59	7756775	7756793	AACGTTATCACTGCTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TepII	FBgn0041182	FBtr0079514	1	1	5	99	2L	7698087	7698737	CCTTACAACACTGAAGATTCG		58	7698008	7698026	CTTCTGCAAAGTTCGTTCG		59	NA	
Drosophila melanogaster	50	Wnt4	FBgn0010453	FBtr0089291	1	1	1	185	2L	7256591	7256609	ACTTGCTGGAAGAAGATGG		59	7256211	7256229	CAAATAGTACAGCGTGGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ndae1	FBgn0031899	FBtr0079410,FBtr0079411	3	2	2	92	2L	7229715	7229736	ATATACGACTGTGTCTGTACAC		59	7229590	7229665	ATTGTAGGACTCACAAGAATCC		59	NA	
Drosophila melanogaster	50	sip2	FBgn0031878	FBtr0079360,FBtr0079357,FBtr0079359,FBtr0079358	2	4	5	86	2L	6961944	6961962	TCAATGGAATCGATTCAGC		57	6961812	6961830	GAGTTCGTTCATCAACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11329	FBgn0031848	FBtr0079319	3	1	1	71	2L	6677057	6677075	AATCTACCTAGGTCCACGT		59	6677004	6677022	TTTATGTTATCGGCGTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13984	FBgn0031796	FBtr0079247	3	1	1	78	2L	6309004	6309022	ATTCGTTGTCTACAAGGCA		59	6309061	6309082	GAGATCATCGTACTTATCATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9107	FBgn0031764	FBtr0079226,FBtr0079225	3	2	2	60	2L	6024121	6024139	GAACCCTTCTCCAACACTC		59	6024079	6024097	TCTCGAACACTATGTAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gpdh	FBgn0001128	FBtr0079147,FBtr0079148,FBtr0079146	2	3	3	106	2L	5947158	5947244	GGTCTGGAGGACAAATTCC		59	5947314	5947332	ATATGCTCAGGGTGATTGC		59	NA	
Drosophila melanogaster	50	obst-E	FBgn0031737	FBtr0079163	1	1	2	125	2L	5765983	5766001	AATCAGTGCTCTATTGTGC		57	5764187	5764205	TTCTTGCACTCAATGTAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14040	FBgn0031676	FBtr0079009	3	1	1	91	2L	5053325	5053343	TTGATAGTCTCCACCTGTC		57	5053456	5053474	TACAAGCCCAATACATTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	eIF-3p40	FBgn0022023	FBtr0079031,FBtr0079030	3	2	2	251	2L	5051656	5051674	ATAACAAGTACCAGCAGGT		58	5051357	5051375	TGATGAAGAGTTTGGCCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11926	FBgn0031640	FBtr0077387	1	1	1	93	2L	4851482	4851500	TTGATCTGAGGAGACTGCT		59	4851557	4851629	AAGATGTTGTTGGACACCT		59	NA	
Drosophila melanogaster	50	ine	FBgn0011603	FBtr0077448,FBtr0077446,FBtr0077449	3	3	4	142	2L	4473965	4474339	AGTCTCAGGTTATCTTCCAG		58	4473842	4473860	GGAAATGATAGGAACTGCC		57	NA	
Drosophila melanogaster	50	CG34394	FBgn0085423	FBtr0112638,FBtr0112640,FBtr0112641,FBtr0112639	1	4	4	80	2L	3364933	3365438	GTCTGATTGTGGACTACTCG		59	3364872	3364890	AGACGTAGTTCTGTGACAC		58	NA	
Drosophila melanogaster	50	CG15404	FBgn0031512	FBtr0077578	2	1	1	62	2L	3174171	3174190	CTGGGTACTTACATGTCCTG		59	3174215	3174233	TTATTTCTCTTGTCGCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3165	FBgn0031484	FBtr0077642	1	1	1	60	2L	2977854	2977872	ATGTGCAGGAAATCATTCC		58	2977896	2977914	TCCTTGAGGCAAGTTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	syt	FBgn0004242	FBtr0077727,FBtr0077728	3	2	4	81	2L	2793377	2793395	ATGGAAAGGGTAAGAAGGG		58	2793251	2793333	TCCTCCATATCAGGTTTCTC		58	NA	
Drosophila melanogaster	50	CG9960	FBgn0031454	FBtr0100383	1	1	1	74	2L	2758711	2758729	GATGACATTCTTTCGCCTC		58	2758655	2758673	TTTGATAATCTCCTCCGGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2843	FBgn0031452	FBtr0077712	2	1	1	119	2L	2745435	2745453	GAGTGCTGAGCAATAATGG		58	2745598	2745616	AGGACTTGTCGATCTTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7082	FBgn0031401	FBtr0077836,FBtr0077838,FBtr0077837	3	3	4	97	2L	2223617	2223708	GCCAAGATAAGATTACGAGAC		58	2223767	2223785	TTGATAAGCAGAGCTCGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG11455	FBgn0031228	FBtr0078117	1	1	2	112	2L	155730	155748	GATCTCCGACTTTCAGGAG		59	155897	155915	ATTCTTGTCCCTTACGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	dbr	FBgn0067779	FBtr0078100	2	1	1	108	2L	67924	67942	CTGCAAATCTTGTTACCGC		59	68011	68093	ATTCTTAGGCAGTGTACTAAGG		59	NA	
Drosophila melanogaster	50	CG14617	FBgn0031191	FBtr0077353	2	1	5	90	X	21887459	21888899	ATTGCTTCAACAGAACAGC		58	21888951	21888971	GAATTTGTCTAGAAAGCTCCG		59	NA	InUTR
Drosophila melanogaster	50	CG1486	FBgn0031174	FBtr0077190	2	1	2	194	X	21195591	21195747	CTTCCAGTATTCGATCGGG		59	21195905	21195923	ACTTAAGAATGTCGGAGGG		58	NA	
Drosophila melanogaster	50	l(1)19Ec	FBgn0001560	FBtr0077285	1	1	1	63	X	20753527	20753545	GATGGTCAATGGTCAAACG		59	20753482	20753500	AGTTATCTGGGTTGACGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp19a	FBgn0031109	FBtr0077300	1	1	1	125	X	20286980	20286998	CCAAGTATCCGAAGGTCAG		59	20287087	20287180	TTCCCTTCTTGATTGCCTG		59	NA	
Drosophila melanogaster	50	CG12703	FBgn0031069	FBtr0074795	1	1	1	80	X	19652301	19652388	CGTGACCAGATCATTTATCCA		59	19652430	19652448	CAGGTAGTGCATGAGATCC		59	NA	
Drosophila melanogaster	50	CG32537	FBgn0052537	FBtr0074687	3	1	1	192	X	19170294	19170312	GCACAAGTTTGTATGTGGG		59	19169371	19169449	GCATTTACGCTAATTGGCA		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7874	FBgn0030999	FBtr0074672	1	1	1	84	X	19107687	19107705	CCGAGTGAGGAAACTACTG		59	19107753	19107771	TCTCTACATCTCCAGAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6873	FBgn0030951	FBtr0074607	2	1	1	60	X	18633528	18633547	TATGAGTATCAGCACCAGTG		58	18633487	18633506	GGATTAGCTTCTCCTTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GS	FBgn0030882	FBtr0074496,FBtr0074498	3	2	3	111	X	17785909	17785928	ATCAATACGATAGCATCGGG		59	17791255	17791418	TATCCGGCATATTGTGCAG		59	NA	
Drosophila melanogaster	50	CG9609	FBgn0030787	FBtr0074356	1	1	1	60	X	16680530	16680608	ACACAGGGATTAAGAAGCA		58	16680488	16680507	ACAATCGAGTACGTCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Scamp	FBgn0040285	FBtr0074080,FBtr0074079	2	2	2	189	X	15343793	15343811	GTAGAATTCCCATGTCCGG		59	15343426	15343444	TTCGTTGAGTTGATCTGCA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9009	FBgn0027601	FBtr0073972	3	1	1	77	X	14829955	14829973	GGATGACTTCATGAGGTCG		59	14829466	14829915	ATCATAAAGAGGGCAATTGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG9519	FBgn0030589	FBtr0073984	2	1	1	60	X	14750259	14750277	CTCAATGGTGATTAGCCAG		57	14750217	14750236	ATAGATCTCGAGCATATCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34346	FBgn0085375	FBtr0112555,FBtr0112554	1	2	2	239	X	13779252	13779353	GAATCCCTCAAGGTCAAGG		59	13779031	13779049	AGATGTTGCTGAGGTTGAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Pde9	FBgn0052648	FBtr0073701	1	1	1	80	X	12688609	12700942	CGACACCTTCAATAACATTCG		59	12688549	12688568	GTGAGGATTTCATTGTGACG		59	NA	
Drosophila melanogaster	50	CG11245	FBgn0030388	FBtr0073646	3	1	1	179	X	12341652	12341670	GGATTCATCCAATTCCAGC		58	12341811	12341964	TCTAACATCTTCTTGGGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32694	FBgn0052694	FBtr0071412,FBtr0071411	1	2	4	108	X	9898694	9898712	CAATGATCTCCAGCTCTCC		59	9898782	9899196	GAACAGATTACTCTTGTTGCG		59	NA	
Drosophila melanogaster	50	CG1468	FBgn0030157	FBtr0071388	3	1	1	74	X	9772671	9772692	CGATGATGACGAATTAAACTGG		59	9772726	9772868	TTCACTACATCTCCACACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15343	FBgn0030029	FBtr0071178	2	1	1	77	X	8166781	8166799	GATGATCTCAAGGCAAAGC		58	8166651	8166740	GGTATAGCTTGCTGGTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dec-1	FBgn0000427	FBtr0071147	3	1	3	61	X	7764241	7764259	AGGTAGATGAGATGTTGCG		59	7764014	7764033	TTATTGTCTGAAATGCGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	dec-1	FBgn0000427	FBtr0071146,FBtr0071145	1	2	3	106	X	7764290	7764311	CCAGTCAATTCGTATCAAAGTC		59	7764007	7764223	TTCGGGTTTATTGTCCTGG		59	NA	
Drosophila melanogaster	50	CG32721	FBgn0027553	FBtr0071077	2	1	1	104	X	7620818	7620836	CATATGAGGATCCCTTCCT		57	7620670	7620688	AGATGAACTCGTCGAAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14441	FBgn0029895	FBtr0070959	3	1	1	103	X	6607700	6607783	AAATAATCGCAAACTTGGGC		59	6607848	6607867	CCTCTCGCAATATTAACTGC		58	NA	
Drosophila melanogaster	50	Ca-alpha1T	FBgn0029846	FBtr0112953,FBtr0089393	3	2	2	80	X	6024644	6024665	GACATAATGTATTACGTGCAGG		59	6022641	6024605	GAACGAACCAATCACAATCAG		59	NA	
Drosophila melanogaster	50	Act5C	FBgn0000042	FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822	1	4	4	111	X	5797605	5797623	AGGATCTGTATGCCAACAC		59	5797698	5797716	TTGATCTTCATGGTCGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0334	FBgn0028325	FBtr0070708,FBtr0070710,FBtr0070709,FBtr0070711	2	4	4	150	X	4598141	4598234	ACAACAACTACGGAATGGG		59	4598348	4598366	TTCACATAGTTGATGGCGA		58	NA	
Drosophila melanogaster	50	CG3598	FBgn0025645	FBtr0070552	1	1	1	60	X	2831559	2831577	GATGGTTAACCGGGATCAG		59	2831601	2831619	CTCGATCTCGATAATGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tko	FBgn0003714	FBtr0070459	2	1	1	109	X	2336487	2336505	CACAACATTGTACTGTGCC		59	2336396	2336414	TATTGGCTCTTCTTGACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mip130	FBgn0023509	FBtr0070315	2	1	1	60	X	1812458	1812478	CTATCAAACGAATAACCTCGG		58	1812500	1812518	GTTGGTAAGATTTGCCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	png	FBgn0000826	FBtr0070234	2	1	1	60	X	1250747	1250765	CTACCAGACATCTTCCACC		59	1250705	1250725	TGAAGTAATGCTTGTAGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32817	FBgn0052817	FBtr0070077	3	1	1	78	X	373964	374066	CTGCGTGACTTTATTTGGT		58	374108	374126	CTAGCTGAGGAACATCTGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CR41608	FBgn0085818	FBtr0114276	1	1	1	60	U	4448066	4448087	GATAGGGACAATATCATATGCG		58	4448108	4448126	CAAGAGTAGCCAAACACCA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18160	FBgn0039980	FBtr0113765	2	1	1	111	U	376563	376581	TTCCATATCCACGATTGCC		59	376707	376725	TTGCATGGTATTCCCTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41316	FBgn0085610	FBtr0114054	1	1	1	60	U	316708	316728	CATAGTAAAGATAGCAGGTGG		57	316668	316686	CTTCTTTAGGTGTGCAACG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	RfaBp	FBgn0016724	FBtr0089188	1	1	1	104	4	1093995	1094070	TTATTGATGGCATACGCAC		58	1094138	1094156	CAACAATGGACTTCTGAGC		58	NA	
Drosophila melanogaster	50	myoglianin	FBgn0026199	FBtr0089093,FBtr0089092,FBtr0089095,FBtr0089094	3	4	4	87	4	713107	713125	ATTCTAATAAAGGGCGCAG		57	712973	713057	CTATGTGAACAGTCAATGGA		57	NA	
Drosophila melanogaster	50	CG2219	FBgn0039889	FBtr0089153	3	1	1	81	4	199499	199574	AAGTTATACACGTTGCACTG		58	199437	199456	TTCCATCTTAGCTTCTTCCA		58	NA	
Drosophila melanogaster	50	CR33328	FBgn0053328	FBtr0082858	2	1	1	65	3R	9464689	9464708	CCAGTAGAGCCACTATATCC		58	9464643	9464661	GATTGCCTGATTGATTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12068	FBgn0039695	FBtr0085481	3	1	1	60	3R	25620670	25620688	ACTGGATCTATTGGAACCC		58	25620712	25620730	CAGTATGTCCCTTAGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spase12	FBgn0040623	FBtr0085435	1	1	1	236	3R	25316613	25316631	CACGTTCTTCGGAATTGTG		59	25316339	25316357	TCCCACTGATTCTACTGCT		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14529	FBgn0039609	FBtr0085328	2	1	1	60	3R	24699161	24699179	TCTACTGGGTGTCTATGTG		57	24699201	24699221	CAACTGTAGGCGTTTAATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr98a	FBgn0039520	FBtr0085184	1	1	1	96	3R	23314953	23314973	CAGCTCTAAGAAGTCTAAACC		57	23315031	23315105	AACTTTCCCAGCATTTCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	GCR(ich)	FBgn0029170	FBtr0085101	3	1	1	152	3R	22875872	22875890	AGAAGACTCTGGTCTACGT		59	22876006	22876024	AGATTCCTCCAGAAATGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14544	FBgn0039407	FBtr0084969	2	1	1	206	3R	21885844	21885862	CTTCGTCACCGTCTATCAC		59	21886707	21886725	TTGGTTAGCTCTTGGATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sld5	FBgn0039403	FBtr0084975	1	1	1	234	3R	21881684	21881702	ACTTCCACAAAGTAGCCAC		59	21881410	21881428	TAAATTAGCTGCGCTTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	jigr1	FBgn0039350	FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887	3	6	6	98	3R	21474749	21474768	GTACGATAGGTCAAACAAGC		58	21474829	21474919	CTTATACTGGTGGCATCGT		59	NA	
Drosophila melanogaster	50	polybromo	FBgn0039227	FBtr0084740	1	1	1	65	3R	20626786	20626805	TGTACTCTAGTGAAGTTCGA		57	20626682	20626700	ATATGTCTCCAAAGGTTGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	nAcRbeta-96A	FBgn0004118	FBtr0084682,FBtr0084681	3	2	2	80	3R	20337250	20337270	TTTACCATGATACTCGTCTCG		59	20336932	20337208	GTGCGTAGATGGAGATCTG		59	NA	
Drosophila melanogaster	50	nAcRalpha-96Ab	FBgn0000039	FBtr0084640,FBtr0084639	3	2	2	94	3R	20313318	20314186	GTGATCAGATCGATTTGAAGC		59	20314241	20314260	CACACTGGGATAGTACTCAC		59	NA	
Drosophila melanogaster	50	cav	FBgn0026257	FBtr0084557,FBtr0084559,FBtr0084558,FBtr0084556	3	4	4	61	3R	20048193	20048272	AACGAGAATAACCGAGGAG		58	20048297	20048315	AAAGCTCCTTTACCTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084570,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	2	6	6	80	3R	20025044	20025062	TAAGACTATGTCCGAGCTG		58	20024921	20025000	TTGATCAGCGTAAACTTGG		58	NA	
Drosophila melanogaster	50	CG31148	FBgn0051148	FBtr0084441	2	1	1	96	3R	19527436	19527454	TGAGTTCAAGGACATCACC		59	19527609	19527627	AATCGAGTTTGGTCGAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	unk	FBgn0004395	FBtr0084403,FBtr0084402	2	2	2	143	3R	18981726	18981807	ATACAAGTACAGGTCCACTC		58	18981602	18981620	GTCGACTTGTAGATCTCCG		59	NA	
Drosophila melanogaster	50	CG6954	FBgn0039000	FBtr0084300	2	1	1	80	3R	18503494	18503514	GGTGTTAAGCAATAATCGCTC		59	18503556	18503634	GTGTCCACAGAGAACTGAG		59	NA	
Drosophila melanogaster	50	CG5278	FBgn0038986	FBtr0084281	2	1	1	109	3R	18385410	18385430	GTGCACATTATCATGTACTCC		58	18384980	18385339	CAGAACTGGATCATCTGCA		59	NA	
Drosophila melanogaster	50	CG34376	FBgn0085405	FBtr0112609	3	1	2	224	3R	18283184	18285566	ATGGACATTCCCTCAATCG		59	18285752	18285772	GTTGTTGGTCACGATTATGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	GABA-B-R2	FBgn0027575	FBtr0084167,FBtr0084168	2	2	2	80	3R	17596862	17596942	TGTGATTAAGACTCCCACTG		59	17596801	17596819	TGTGAAACCACGAAATTGG		58	NA	
Drosophila melanogaster	50	CG17278	FBgn0046763	FBtr0084047	3	1	1	60	3R	16847162	16847181	AAGACCTATCGCAATCTGTG		59	16847021	16847141	GAAAGTTTGCATTCTGGAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	TotB	FBgn0038838	FBtr0083973	3	1	1	123	3R	16699717	16699794	TTTGATCTGTTTCGCACTG		58	16699881	16699899	TTTGGTATTGTCGTCCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31195	FBgn0051195	FBtr0083997	1	1	1	86	3R	16585155	16585173	TATGTGAAGAAGTGGCTGG		59	16584812	16585105	TACCACACCCTTGAATTCC		59	NA	
Drosophila melanogaster	50	CG5180	FBgn0043457	FBtr0083903	2	1	1	61	3R	16384864	16384884	GAAGGTCTTAGAGATCACCTC		59	16384907	16384989	TGACCGCTTGTTGTATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33934	FBgn0064119	FBtr0091940,FBtr0091939	1	2	2	94	3R	15873183	15873268	CTTTCTGAATGCCAAAGCC		59	15873324	15873344	ACTTGAAGAAGGTGTACTGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG17193	FBgn0040571	FBtr0083838	3	1	1	153	3R	15865449	15875380	TATTACAGTGGTCACTCGT		57	15865314	15865333	AGGCGTTGATATAGTACTCC		58	NA	
Drosophila melanogaster	50	CG4468	FBgn0038749	FBtr0083852	3	1	1	60	3R	15740971	15740989	AATTCATCCACGGGATACG		59	15740929	15740947	CTTTATCCTTGCCAGAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11703	FBgn0038690	FBtr0083744	3	1	1	60	3R	15053221	15053239	CAAGATTTGGATCACCTGC		58	15053179	15053197	CGGATAGAAGACCATTTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3995	FBgn0038472	FBtr0083428	1	1	1	77	3R	12868431	12868451	CTGTCATCCGAACTTAATAGC		58	12868318	12868392	CTTCCAGTCCTTTAAGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acyp2	FBgn0038363	FBtr0083174	2	1	1	164	3R	11618599	11618617	TTCGAGATCTTTGGACGAG		59	11618868	11618944	CAGCCAATGTTTCATTTCC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG6136	FBgn0038332	FBtr0083108	1	1	1	62	3R	11196990	11197011	GATAGCCAAACATCAAAGAGAC		59	11196949	11196967	AGGTTGGACACCTTTATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31326	FBgn0051326	FBtr0082901	3	1	1	82	3R	10045403	10045421	TATTCCAACAATACCGCCC		59	10045282	10045358	TTGGCTTAGGATATACACCG		58	NA	
Drosophila melanogaster	50	CG8863	FBgn0038145	FBtr0082751,FBtr0082754,FBtr0082753,FBtr0082752,FBtr0082755	3	5	5	220	3R	9210099	9210118	TTATCAGGCATGAGATGACC		59	9210301	9210409	CTTGGGATCAAAGTCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14384	FBgn0038097	FBtr0082731	1	1	1	60	3R	8791905	8791923	AAATGGACGATGAGGAAGG		59	8791863	8791882	GACTGGATAGCATTGTACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31347	FBgn0051347	FBtr0082664	1	1	1	60	3R	8517965	8517983	ATGTGGAGTCTATTCCCGT		59	8517923	8517941	CTGTCGAAGTCCATTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha55	FBgn0005671	FBtr0082670,FBtr0082671	2	2	2	172	3R	8450715	8450735	CTGTATCTGGAGTTCTTGACC		59	8450502	8450520	TCCCTAGGGTAGAATTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rpt3R	FBgn0037742	FBtr0082165	3	1	2	106	3R	5581288	5581354	TACAAGCAAATTGGCATCG		59	5581200	5581218	GATGCAGTTGTATGATGGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG11033	FBgn0037659	FBtr0081970	1	1	1	186	3R	4883799	4884056	GATCTCACCGTAGCTTTCC		59	4884206	4884224	TCATCTGCAGGTTCTTCTG		59	NA	
Drosophila melanogaster	50	Pif1B	FBgn0046874	FBtr0091717,FBtr0091716	2	2	2	61	3R	4600939	4600957	TTGATATGCATGCCATGGA		59	4600828	4600915	CTTAAGGTGCTTTGGTTTCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG18748	FBgn0042105	FBtr0113344,FBtr0113345	2	2	2	190	3R	3612901	3612979	ACTCTGTTTCACAGGTTCC		59	3612729	3612747	TAGTCCAACCTTCACTTCG		58	NA	
Drosophila melanogaster	50	Sodh-1	FBgn0024289	FBtr0081627	3	1	1	123	3R	2879971	2880042	GCTACTGCAATGACTATGC		58	2880129	2880147	TTTCGTGACGTTTCAAACG		59	NA	
Drosophila melanogaster	50	ftz	FBgn0001077	FBtr0081625	3	1	1	86	3R	2690789	2690807	ATCATCGAATTGTGACAGC		58	2690857	2691022	AGTCTTTGCAATCTGATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdep	FBgn0051536	FBtr0078840,FBtr0110958	2	2	2	87	3R	748468	748487	CTCTTATCGATCCAGTGCTG		59	748535	748677	AACAAATACCTGGTGTACTCC		59	NA	
Drosophila melanogaster	50	jim	FBgn0027339	FBtr0078582,FBtr0100184,FBtr0078581	2	3	3	122	3L	22792357	22792375	CCCTCTTACTTCAAGGACG		59	22792193	22792211	CTTAAACTCCTTGTCGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7369	FBgn0037188	FBtr0078530	2	1	1	108	3L	22739972	22740059	AGCGAGATAGTCAAGTACC		58	22740128	22740149	CCATCAGACTATTAAAGTTGCC		59	NA	
Drosophila melanogaster	50	CG7202	FBgn0037086	FBtr0078393	2	1	1	117	3L	21485775	21485793	TAAGTTTCTTGTTCCTGGC		57	21485287	21485696	TCTGTGTATAATTCGACTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6049	FBgn0037081	FBtr0078400,FBtr0078399,FBtr0078398	1	3	3	80	3L	21414146	21414217	GTTATCTATGATCGCCATCCT		59	21414086	21414105	CATTTGAATGACGAGGTCAG		58	NA	
Drosophila melanogaster	50	CG3288	FBgn0037030	FBtr0078262	2	1	1	61	3L	20829570	20829589	TACGGTCAGTTTGGATTCAG		59	20829613	20829695	TATACGCATCACCGAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pitslre	FBgn0016696	FBtr0078249,FBtr0078248,FBtr0078250,FBtr0078247	1	4	4	66	3L	20764898	20764916	AAATGGTCAATTCGTCTGG		58	20764946	20764964	CTGTGATAGTGCACATCGT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG6663	FBgn0036969	FBtr0074843	2	1	1	81	3L	20315021	20315040	AACTGATGTAGAAGTCAAGC		57	20315084	20315159	TAGTCCAGCGTCATATACG		58	NA	
Drosophila melanogaster	50	CG3961	FBgn0036821	FBtr0075079,FBtr0075077,FBtr0075078	2	3	3	80	3L	18872658	18872678	AGATCGAGAATATCTACACGC		59	18872548	18872618	CGATAATGCAGCTCTTTAAGC		59	NA	
Drosophila melanogaster	50	CG7510	FBgn0036741	FBtr0075182	2	1	1	80	3L	17619486	17619600	GCTATCCCATAGTTATGGCT		58	17619643	17619661	GTGAGATAGGAGCCATCAG		58	NA	
Drosophila melanogaster	50	noe	FBgn0026197	FBtr0110844,FBtr0110845	3	2	2	195	3L	17393782	17393800	ACATCTAGTAACACGACGC		59	17393605	17393624	TGCCTTAAACGTCTCTATGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Mipp1	FBgn0026061	FBtr0075398,FBtr0075399	1	2	2	146	3L	16558056	16558146	ACACTTACTACCAGTTCCG		58	16557928	16557946	AATAGTCATAGGGACGCAG		58	NA	
Drosophila melanogaster	50	CG5157	FBgn0036575	FBtr0075490	2	1	1	60	3L	16130055	16130075	GTACGATGTAACCAAGTTCCT		59	16130015	16130036	ATATTCGAGTAGTGCTTCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7579	FBgn0036528	FBtr0075581	1	1	1	63	3L	15675467	15675485	AATCCCAGCTTACAAGTCC		59	15675344	15675362	TATACTCGTCCAACCAGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13455	FBgn0036498	FBtr0075544	3	1	1	116	3L	15490337	15490355	CTGTACGACTCCATCAGTC		59	15490503	15490521	TTGAAGTACCTTGAGAGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13466	FBgn0036456	FBtr0075619	3	1	1	126	3L	14934893	14934911	GAGCAACCGCTACTATAGC		59	14935001	14935140	CGAGATGCAGGGATATCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Hsc70-1	FBgn0001216	FBtr0075761	1	1	3	106	3L	13967868	13968827	GATCTTTGTCTCAGGGTCC		59	13968895	13968915	GGGATATTATGTGGCATTGTG		59	NA	InUTR
Drosophila melanogaster	50	CG10738	FBgn0036368	FBtr0075805,FBtr0075804	1	2	2	81	3L	13454140	13454218	CCAACACGAGGATCTATCTC		59	13454259	13454280	AGAATTCCTCTTCTTTGGAGAC		59	NA	
Drosophila melanogaster	50	CG11263	FBgn0036330	FBtr0075873	1	1	1	60	3L	13000064	13000082	ACATTCGTTACCCTTTCGG		59	13000104	13000124	ATTCGATCTAGTTGCTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32113	FBgn0052113	FBtr0075922	3	1	1	80	3L	12749177	12749510	GTCATAGACATATCTAAGGTCCAG		59	12749548	12749567	TTGTCGAACTTCCTTAACCT		58	NA	
Drosophila melanogaster	50	CG32103	FBgn0052103	FBtr0075983,FBtr0075982,FBtr0075984	3	3	3	148	3L	12398217	12398235	ACGTACCTGATGACTTCAC		59	12398022	12398105	TCTTTGTGTTTGTACCTGC		58	NA	
Drosophila melanogaster	50	CG6938	FBgn0036235	FBtr0076047	3	1	1	82	3L	11980649	11980667	CAAACACTTCTGGAGGGAG		59	11980711	11980802	CGATCCTTGACAATAAACTGC		59	NA	
Drosophila melanogaster	50	CG34420	FBgn0085449	FBtr0112716	1	1	1	162	3L	11847480	11847500	CAATTATGCCTGGAATGTTCG		59	11845694	11847356	ATATGCTGACCACACTTGG		59	NA	
Drosophila melanogaster	50	CG6091	FBgn0036180	FBtr0076143,FBtr0076141,FBtr0076142	3	3	3	119	3L	11600443	11600549	ACTGCTACCAGTCAAATCC		59	11600342	11600361	TGTAGGGATCCAGAATAGCA		59	NA	
Drosophila melanogaster	50	CG7551	FBgn0036161	FBtr0076176	1	1	1	60	3L	11451930	11451949	GGCATCATTATCGACAACTG		59	11451972	11451990	GTATCACGGATGAGAAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12289	FBgn0036160	FBtr0076178,FBtr0076179	2	2	2	60	3L	11451022	11451040	ATTGCGACAAGTCATTTCC		58	11450980	11450998	TGATCGAGATCCAATTTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fad2	FBgn0029172	FBtr0076196	3	1	1	60	3L	11016993	11017011	GATGCGGTCTACTATTGGG		59	11017032	11017053	CATCAGTTTCCGTATACTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32054	FBgn0052054	FBtr0076314	3	1	1	137	3L	10087244	10087262	GATTCAGAGGAGTACTCCA		57	10087059	10087143	ACGAACTGAAGATCAAGAC		57	NA	
Drosophila melanogaster	50	Taf2	FBgn0011836	FBtr0076361	1	1	1	84	3L	9878987	9879005	CTTAACACCTGTGGTCTCC		59	9878861	9878939	ATCTAGCACAAGTTTCGCA		59	NA	
Drosophila melanogaster	50	CG33926	FBgn0053926	FBtr0091930	3	1	1	72	3L	9436449	9438806	AATATTAGGGCCATAGAGGAC		58	9438840	9438858	CAGTGATCTCCATGTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fhos	FBgn0052030	FBtr0076577,FBtr0076578	2	2	2	82	3L	8780751	8780770	ATATGTCCGGTCTGATTTCG		59	8780810	8782051	GACACTAGAAGATCTGGATATCTC		59	NA	
Drosophila melanogaster	50	mthl6	FBgn0035789	FBtr0076789	2	1	1	80	3L	7480008	7480028	GTTTGTGCAGTACCTTATCTG		58	7480068	7480142	TAGTTAGTGTAACCTGCTAGG		58	NA	
Drosophila melanogaster	50	sgl	FBgn0010851	FBtr0076938	1	1	1	175	3L	6954940	6954958	TCTTCATCTCGGTGAACAC		59	6954300	6954318	TATGTGCATGATGCTCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18586	FBgn0035642	FBtr0077026	2	1	1	89	3L	5867454	5867524	TCATTGTGGACTACATGGC		59	5867577	5867595	TTATGGCCATCGAAAGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32251	FBgn0052251	FBtr0073286	2	1	1	120	3L	4318188	4318270	GGAACATGAGAATCGAAAGAG		58	4318350	4318370	CTGATCTATTAGGCACTTGTC		57	NA	
Drosophila melanogaster	50	Eip63F-1	FBgn0004910	FBtr0073174	2	1	1	89	3L	3919939	3919957	TATGCTAAAGAACCTGGGC		59	3913987	3919886	TTGATTAAGCCATTGCCTG		58	NA	
Drosophila melanogaster	50	dro2	FBgn0052279	FBtr0073059	2	1	1	71	3L	3314459	3314477	CTTTCCGGCAAATACAAGG		59	3314512	3314530	CTCCTCCTTGCAAATACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12009	FBgn0035430	FBtr0073053	2	1	1	71	3L	3296307	3296385	TTCAGTCAGGAATCGTTCAC		59	3296419	3296437	GTATCTGGAGCTATCCTCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14959	FBgn0035427	FBtr0073049	2	1	3	136	3L	3267287	3267442	GATCTTTCACATGTGCGAC		59	3267541	3267677	TCAGTAATCTTACGGGTGAC		58	NA	
Drosophila melanogaster	50	CG32299	FBgn0052299	FBtr0072898	1	1	1	62	3L	2389930	2389948	TACCATGTTCATCGATCGC		59	2389826	2389905	GGCTTGATAGTAGGTCTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1317	FBgn0035333	FBtr0072901	1	1	1	297	3L	2370381	2370402	GTATACGTTTACTACTTCGCTG		58	2370048	2370124	TTTGTAAGAGCAGCAATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dlt	FBgn0024510	FBtr0072790	1	1	1	60	3L	1791124	1791142	CTACAATTACAGGGCACAG		57	1791082	1791100	GCAGATATCCACAATTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2469	FBgn0035205	FBtr0072668,FBtr0072669	2	2	2	73	3L	1307847	1307865	TGTTGAGCATTCTCAAGCA		59	1307902	1307981	TTGTTTGTAGTAGGCAAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13889	FBgn0035168	FBtr0072586	1	1	1	90	3L	850361	850444	TTGGAGGACTACATCATGG		58	850498	850516	GATTTGTGCTCACCTTGAG		58	NA	
Drosophila melanogaster	50	PebII	FBgn0011694	FBtr0072455	1	1	1	60	2R	21061515	21061533	CTGGACATCAACAGAAGGG		59	21061473	21061492	CATATCCAAACGAGAGTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16936	FBgn0027590	FBtr0072436	1	1	1	148	2R	20654930	20655005	GAACTACGGCCAATTAACC		58	20654800	20654818	TACTTCTCCACCAGGTAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Crtp	FBgn0029501	FBtr0072299	1	1	1	64	2R	20384056	20384074	AGTGTACAGCCCAATTTCC		59	20384102	20384120	AAGTCTGGTTTGTTGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13568	FBgn0034965	FBtr0113115,FBtr0113116	1	2	2	90	2R	19941626	19941644	CTCAGGTATTCTTCGTTGG		57	19941485	19941572	GACTGTTGACGTACATCTC		57	NA	
Drosophila melanogaster	50	CG3173	FBgn0034964	FBtr0072168	3	1	1	96	2R	19927935	19928010	GAGTTGCAGATAATAACCATGG		59	19928066	19928085	TTTCCTCAGTGATAACAGCA		58	NA	
Drosophila melanogaster	50	thoc5	FBgn0034939	FBtr0072147	3	1	1	83	2R	19843448	19843468	GAAATGCCTCTATGGATTCTG		58	19843512	19843587	GAACTCCATCATCTTGATCG		58	NA	
Drosophila melanogaster	50	CG4763	FBgn0034910	FBtr0072238	3	1	1	98	2R	19711252	19711270	TATATTCGACGACCTCCGA		59	19711076	19711191	TAGATGGTGATTCCAACTCC		58	NA	
Drosophila melanogaster	50	CG30417	FBgn0050417	FBtr0072041	2	1	1	60	2R	19214915	19214934	ATTACCATGAGATTGTCCGG		59	19214874	19214893	GTATTCAAACGATGCCTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3536	FBgn0034775	FBtr0071916	2	1	1	198	2R	18634396	18634414	ATACTCAATATGGGCACCG		59	18632233	18632560	AGTATTTGACTTTCTCCAGC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Gr58c	FBgn0041237	FBtr0071727	2	1	1	60	2R	17864442	17864460	GAGCAGTGTTTGGATACAG		58	17864481	17864502	CATCTTCATTAAGTCGTTTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15675	FBgn0034648	FBtr0071664	3	1	2	81	2R	17553012	17553715	AAAGAACACTGGAATCTGTG		58	17553759	17553777	CATTTGTGACGAACATGTG		57	NA	
Drosophila melanogaster	50	Xbp1	FBgn0021872	FBtr0071571	1	1	2	187	2R	17031809	17031828	ATACTACAGAACAAGTGCGA		58	17031978	17032049	GTTGTATACCAGCCCTCAG		59	NA	
Drosophila melanogaster	50	CG3216	FBgn0034568	FBtr0071551,FBtr0071552	1	2	2	80	2R	16875160	16875242	CATAATGAAAGGCTTCTGTGAG		59	16875101	16875119	AGACTCTCGAGATTGTTGG		58	NA	
Drosophila melanogaster	50	IM14	FBgn0067905	FBtr0100038	2	1	1	109	2R	16757932	16757950	GAACTGTCTGAAGATCTGC		57	16758087	16758105	CAGTTTGAATCAACGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp57c	FBgn0034509	FBtr0113099,FBtr0086292	2	2	2	80	2R	16391211	16391291	GTGGTCTCCATACAGAGTC		58	16391335	16391353	CTGGCTGATGTTATTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34197	FBgn0085226	FBtr0112390	2	1	1	60	2R	15289850	15289868	ATCATCGTTAGAACTCGCA		58	15289808	15289826	GTCGTCTTCTGTTGTACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18605	FBgn0034411	FBtr0086571	1	1	1	75	2R	14865375	14865395	GCCAATTCGCTATATTCTCTG		58	14865432	14865525	TGAGACGGAAATATTCGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17680	FBgn0062440	FBtr0086781	2	1	1	174	2R	14035293	14035311	ATAACCTAAGGATCCTGCA		57	14035137	14035155	TTCTCCTCCAGAAAGTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30323	FBgn0050323	FBtr0086800	3	1	1	60	2R	13741283	13741301	GGAGTTGAATAGCACTTGG		58	13741323	13741343	ACTTACGTAGTAAATCCTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6362	FBgn0028740	FBtr0089556	1	1	1	121	2R	13659403	13659421	AAATACCACTGGTACACGC		59	13659186	13659204	TACGAGGAGTTCTTCATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10936	FBgn0034253	FBtr0086894,FBtr0086895	2	2	2	82	2R	13494101	13494120	AACCAGAGCTACTTGATCAC		59	13493968	13494058	GGAATAAACTTCGTTGAGCTG		59	NA	
Drosophila melanogaster	50	CG30321	FBgn0050321	FBtr0087286	1	1	1	76	2R	11680858	11680876	AATGGATGAAGTGGAACGG		59	11680916	11680934	TTTCTATTCCACTCGTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30090	FBgn0050090	FBtr0087279	3	1	1	158	2R	11577929	11577995	CTTTCAAAGCTCACATCTCG		59	11578116	11578134	AATTATAGCGCTGGAGCTG		59	NA	
Drosophila melanogaster	50	alphaPS4	FBgn0034005	FBtr0087371	1	1	1	80	2R	11148510	11148531	CTAAATTTACACCCATAGCCCT		59	11148572	11148649	AATCCTCGCAGAAATCTCC		59	NA	
Drosophila melanogaster	50	Tfb1	FBgn0033929	FBtr0087548,FBtr0087549	1	2	3	83	2R	10250940	10250958	GTAATGAATGAGCGTGTGG		58	10251005	10251085	TTGAGTCTTGATATCCGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Aats-phe	FBgn0020766	FBtr0087594	3	1	1	83	2R	9857094	9857181	ATATGGTGGAGCAGATCAG		58	9857228	9857246	GATAAACAATGCGGAAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6543	FBgn0033879	FBtr0087643,FBtr0087644	1	2	2	142	2R	9740744	9740762	TTAACACGGCTTACGAGAC		59	9740555	9740574	TTACTCGTTGGTAAACTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8520	FBgn0033734	FBtr0087926	1	1	1	122	2R	8311503	8311521	CAGGATGATCCTAACGCTG		59	8311604	8311682	CTTTCGATGAATTTGGGTACAG		59	NA	
Drosophila melanogaster	50	CG13192	FBgn0033653	FBtr0088031	2	1	1	95	2R	7713838	7713856	TTGGATGTGATGGAATTGG		57	7713915	7713996	AATCAACTTGTCGGTTGGA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	inv	FBgn0001269	FBtr0088068,FBtr0088070,FBtr0088069,FBtr0088067	2	4	4	60	2R	7364319	7364339	GCATAGACAATATCCTGAAGG		57	7364360	7364379	CTTAAAGCACCAATCTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33476	FBgn0053476	FBtr0088319	2	1	1	60	2R	6298049	6298067	GGACCATTCTGTGGATCAG		59	6297919	6297940	GGATTCCATGATAAACTTGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12929	FBgn0033429	FBtr0088541	2	1	2	149	2R	5473879	5473897	CAGAGGGCCAGTATTACAG		59	5473690	5473708	CATCAGGATACTGCCACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rad51C	FBgn0033389	FBtr0088585	1	1	1	86	2R	5053968	5053986	TCAGTGCTGACAGAATTGG		59	5054033	5054141	CATCACCACAACTATATTCCCA		59	NA	
Drosophila melanogaster	50	CG8262	FBgn0027513	FBtr0088685	3	1	1	101	2R	4786812	4786881	ACCAATCAAGCAGGTAGAC		59	4786729	4786748	AAACTGAGGAATCACTCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34217	FBgn0085246	FBtr0112410	1	1	1	60	2R	4115842	4115862	GAAATCGAGTTGTTCGATCTG		59	4115802	4115823	TATAGTCCTTGAGACGATTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp42Eb	FBgn0042086	FBtr0086177,FBtr0086176	1	2	2	158	2R	2886793	2886811	CTCTCCATCTGGATCTTCG		58	2887005	2887023	ATACTGTTGGTATCCCGTG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG41448	FBgn0084012	FBtr0111271	3	1	1	61	2R	562477	562689	ATTGAGAAAGAGGAACCGTG		59	562435	562453	CTTGTAAACCTCACGTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40005	FBgn0058005	FBtr0111236,FBtr0111235	2	2	2	91	2L	22842549	22842623	GAACATTCCATTTGTGTTCG		57	22842477	22842495	TAATGGATGTTACGGAGCT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41439	FBgn0084005	FBtr0111228	3	1	1	93	2L	22243408	22243426	GATAAGCTCAAACCGTGGT		59	22242760	22243351	CGGACGGAAGAGATAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14402	FBgn0032894	FBtr0081425	2	1	1	60	2L	20849802	20849820	TACAGGAGAGCTCTGTCTG		59	20849844	20849862	AAACTCGTGACCATCAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10747	FBgn0032845	FBtr0081341	2	1	1	157	2L	20090939	20091015	TCAATCTGGCTATTCCAGG		58	20090800	20090818	CAGTGTTCCAGAAGATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17564	FBgn0032768	FBtr0081225	2	1	1	119	2L	19298577	19298649	GCGAAGAGATGTACATTCG		58	19298476	19298494	GAGGGATCAGATGATTCGA		58	NA	
Drosophila melanogaster	50	CG17567	FBgn0040994	FBtr0081231,FBtr0081229	3	2	4	191	2L	19183449	19183517	CCAAATTCCACTTAGCTGC		59	19183223	19183241	AATGAGCACTGGATGTAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG10700	FBgn0032754	FBtr0081171	2	1	1	60	2L	19077844	19077865	GAGTGGTATAAACATCAATCCC		58	19077805	19077823	TTTAGTCTGCAGAAAGTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15172	FBgn0032740	FBtr0081140	2	1	1	62	2L	19023381	19023400	TGCTAGCAAACTTTGATGAG		58	19023425	19023443	CAGTGTCTGTGAAGATCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15157	FBgn0032675	FBtr0081059	2	1	1	80	2L	18204458	18204476	GAGGACGAGATATTCTCGC		59	18204396	18204415	TTTCGAGGATGTATTACCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13283	FBgn0032613	FBtr0080928	3	1	1	60	2L	16835818	16835836	TTTCGTATCGCCTTATGTG		57	16835776	16835795	GTGCCTCAAGAAATATGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31782	FBgn0051782	FBtr0080938,FBtr0080939	3	2	2	111	2L	16700296	16701206	ATCAAATCTTAACACCCGG		57	16700203	16700221	CGTATGAGTCTGAATGTGC		58	NA	
Drosophila melanogaster	50	CG5869	FBgn0028894	FBtr0080851	2	1	1	92	2L	16302195	16302268	ATAGCCAGATCGAATTGCA		59	16302121	16302139	GTTCGCGTATCTCGTAGAC		59	NA	
Drosophila melanogaster	50	CG3793	FBgn0028507	FBtr0080761	1	1	1	103	2L	15765116	15765135	GTTCTGGTCTATATCGAGGC		59	15765201	15765283	TTCATGTTGACCTGTTCGT		59	NA	Nonspecific
Drosophila melanogaster	50	mol	FBgn0086711	FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015	1	5	5	81	2L	14984076	14984208	CTAGTCATATTAATCACTCGCC		58	14984016	14984034	GTGAGAAGGCTTTGTATGG		58	NA	
Drosophila melanogaster	50	Adh	FBgn0000055	FBtr0100591,FBtr0100593	2	2	5	60	2L	14618429	14618447	TAGTGCATCCAAATTCGGT		59	14618471	14618540	ATAGTAAAGAGGGTCCGCT		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	spel1	FBgn0015546	FBtr0100661,FBtr0080630	2	2	2	166	2L	14364283	14364381	CTTTAAGAAAGAGGAGTGCA		57	14364510	14364528	CTCTTCCAAGAATGGAGTC		57	NA	
Drosophila melanogaster	50	CG18146	FBgn0028939	FBtr0080589	3	1	2	87	2L	13980362	13980380	GGTAACAATGCGTAAGCAC		59	13980429	13980510	CAAGTAAGTCTCAGTTCTGGT		59	NA	
Drosophila melanogaster	50	ics	FBgn0028546	FBtr0080511	3	1	1	111	2L	13639941	13639961	CATGAAGATGGAGGAGAATCC		59	13639787	13639874	GTTGTAGATGATCTTATAGGTCTCC		59	NA	
Drosophila melanogaster	50	rho-6	FBgn0032415	FBtr0080360	1	1	2	110	2L	12131373	12131391	GATCTTCAAACCGGAATGG		58	12131055	12131300	CCTATAAAGCACTGAAAGCA		57	NA	
Drosophila melanogaster	50	CG4658	FBgn0032170	FBtr0079886,FBtr0079887	3	2	3	129	2L	9957784	9957802	GATGTCACCGAGAAGTACC		59	9957892	9957972	GAAAGACTTGTGACACAAAGAC		59	NA	
Drosophila melanogaster	50	pes	FBgn0031969	FBtr0079553,FBtr0114550,FBtr0079552	1	3	3	86	2L	7988318	7988403	CCGGGTATTACCTTGTATGAG		59	7988252	7988270	AATTTCCTCTGATACGCGT		59	NA	
Drosophila melanogaster	50	CG14537	FBgn0031954	FBtr0079526	1	1	1	60	2L	7840743	7840761	AGGGATATAACCAGTGGAG		57	7840785	7840803	AGAAATCCATATTGGCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	r2d2	FBgn0031951	FBtr0079489	3	1	1	147	2L	7800620	7800638	CTATTGGAGATAGAGGCCC		58	7800822	7800840	GTTCCTCATCCAGATCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7214	FBgn0031940	FBtr0079499	3	1	1	81	2L	7744200	7744218	GAACTCTGTAAGTCGGGAG		59	7744137	7744156	GATCAGTGATACTGCCATCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Wnt4	FBgn0010453	FBtr0089291	2	1	1	186	2L	7256591	7256609	ACTTGCTGGAAGAAGATGG		59	7256210	7256228	CCAAATAGTACAGCGTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11327	FBgn0031849	FBtr0079316,FBtr0079315	3	2	2	60	2L	6685901	6685919	AAATGAAGCCTCTGATGTG		57	6685859	6685878	CAGCTGTTCCATATCTAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7371	FBgn0031710	FBtr0079129	3	1	1	81	2L	5522671	5522745	TAAAGAATCGATACACAGCG		57	5522609	5522627	AATAGGTATTCCCGACAGG		58	NA	
Drosophila melanogaster	50	Cyp4ac2	FBgn0031694	FBtr0079067	1	1	1	112	2L	5266887	5267085	TGATTAGCACAGCACTCTC		59	5267159	5267179	CGTAAACTGAGGAATAACCTG		58	NA	
Drosophila melanogaster	50	CG15356	FBgn0031377	FBtr0077869	3	1	1	240	2L	1980410	1980553	GGAACTCGAGTCCTATTCAC		59	1980117	1980135	AAGAAGAGGATAGAGGCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	c-cup	FBgn0031367	FBtr0077894	1	1	1	110	2L	1832362	1832437	AATGTTTCCTGCAAAGCTG		59	1832270	1832288	TTTGTGGTGACAAAGTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ush	FBgn0003963	FBtr0078063	1	1	1	81	2L	524040	524059	GCTTAGCAGCAATACAAGAG		58	525432	536039	ACTCAGATCTTTGGAATCTCTG		59	NA	
Drosophila melanogaster	50	CG11455	FBgn0031228	FBtr0078117	2	1	2	113	2L	155729	155747	TGATCTCCGACTTTCAGGA		59	155897	155915	ATTCTTGTCCCTTACGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mir-13a	FBgn0046830	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	Tao-1	FBgn0031030	FBtr0074771,FBtr0074772	1	2	4	193	X	19470238	19470256	TGGACAACCTCAATTACCG		59	19469994	19470081	TGAGGAGCTCTGACTACTG		59	NA	
Drosophila melanogaster	50	CG32541	FBgn0052541	FBtr0074650	3	1	1	83	X	18881223	18881243	CTGTTCACAGAATTCTACTCG		58	18881288	18898635	TCCAACCTTCTGGAATCTC		58	NA	InUTR
Drosophila melanogaster	50	CG9903	FBgn0030756	FBtr0074297	1	1	1	60	X	16434458	16434478	TTTGGATACAGTTCACTGGAG		59	16434418	16434436	TTGGATATGTCTCCGTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	2	7	7	82	X	15717700	15717788	GATCCATTGCTTGAGACTG		58	15717832	15717852	TCGTAGAGATCTTTAAGTCCC		58	NA	
Drosophila melanogaster	50	CG14408	FBgn0030581	FBtr0114621,FBtr0073990	1	2	4	240	X	14725241	14725259	CAAGGTCAATCAGTCCCAG		59	14724275	14724293	GTTGTACGTTAACTTCGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11369	FBgn0029951	FBtr0071067	3	1	1	60	X	7469940	7469958	ACTTTCCGTGGTATACTCC		58	7469982	7470000	TTTGGTATTTGGGTTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100209	2	1	15	81	X	6981698	6984168	CGAAATGGAATCGATTCATCG		59	6980002	6981655	CATAACGTGACATTCCGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	1	8	8	166	X	6579447	6579465	ACAACGTCTTCCACTACAG		59	6579594	6579676	TGGAGAAGTCACATTGAAGG		59	NA	
Drosophila melanogaster	50	bcn92	FBgn0013432	FBtr0070431	1	1	1	60	X	2043261	2043280	CAGAATCTGGAGCTGATACG		59	2042843	2042861	GTTTGTCAGCGGAATACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32809	FBgn0023531	FBtr0089815,FBtr0089814	2	2	2	83	X	1579765	1584246	TCCACAAATCAAAGATTGGC		59	1579701	1579719	CTGAAGAGTACATGCCTCG		59	NA	
Drosophila melanogaster	50	pcl	FBgn0011822	FBtr0070100	3	1	1	60	X	330998	331019	AGTGTTTCTGGTTATCTATCCG		59	330959	330977	GACTTTGTATCGTCAAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	unc-13	FBgn0025726	FBtr0089247	1	1	3	81	4	906511	907602	GACAGGGACAAGAATGGAG		59	906448	906469	TGCTATAGAATGGATTGTCACC		59	NA	
Drosophila melanogaster	50	CG11900	FBgn0039650	FBtr0085407	3	1	1	66	3R	25027716	25027734	CCTAAGGGATCTGCAAGTC		59	25027607	25027626	AACGAAGTACTGATCACGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14253	FBgn0039467	FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074	2	5	5	83	3R	22809873	22809891	CAGTATGCCTATGGAAGGC		59	22809935	22810014	CGGTAACTTAAAGATTTGGCTC		59	NA	
Drosophila melanogaster	50	sda	FBgn0015541	FBtr0112882,FBtr0085066	3	2	2	80	3R	22769911	22769997	GATTGTCGAATACTATGGCG		58	22770037	22770058	TAGTCCTTGTTCATGTAGATGG		59	NA	
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113386,FBtr0113387,FBtr0113388	2	3	7	157	3R	21531749	21532018	GTCGAAGATCTGGGTATCC		58	21527341	21527359	TGGTTAGATGTGTCTGTGC		59	NA	
Drosophila melanogaster	50	nAcRalpha-96Ab	FBgn0000039	FBtr0084640,FBtr0084639	1	2	2	86	3R	20313318	20314186	GTGATCAGATCGATTTGAAGC		59	20314234	20314252	GATAGTACTCACGCAGGTC		59	NA	
Drosophila melanogaster	50	AP-1sigma	FBgn0039132	FBtr0084496	1	1	1	98	3R	19785069	19785087	ATTCATCGCTATGTGGAGC		59	19785214	19785234	CTCATCCAGGATAAAGTATGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17270	FBgn0038828	FBtr0083994	3	1	1	60	3R	16643045	16643064	AACTTCTACGTGATCTTCCC		59	16642910	16642930	TATAGATGAGGCCCAGTAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31199	FBgn0051199	FBtr0083930	2	1	1	60	3R	16568986	16569004	CGAACCTTAAAGAACTCCC		57	16568944	16568962	TTGGGTAGATCTTTGCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31231	FBgn0051231	FBtr0083662	1	1	1	61	3R	14492861	14492879	TTGAGCAAGCAACTAGAGG		59	14492968	14492986	TTCTTGTAGTTCGACTGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	cpo	FBgn0000363	FBtr0083534,FBtr0083536,FBtr0100377,FBtr0083535,FBtr0083537	3	5	6	176	3R	13793463	13793481	CGCCATAATGGAGAATCAG		58	13832727	13832810	CCTTCATAGCCCTCATAGG		58	NA	
Drosophila melanogaster	50	Cap-H2	FBgn0037831	FBtr0082273,FBtr0082270,FBtr0082272	2	3	4	87	3R	6589604	6589625	CTAGATGAACTGTTGCTAATCG		58	6589671	6589889	GGCGTTGATCTTCTAAATCTG		59	NA	
Drosophila melanogaster	50	Syn	FBgn0004575	FBtr0089476,FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471	1	5	5	80	3R	6041341	6042793	GGTGGATGAGATATCCGAG		58	6042837	6042855	TACTCTCGTCCATCTTTGG		58	NA	
Drosophila melanogaster	50	sage	FBgn0037672	FBtr0081983,FBtr0081982	2	2	2	73	3R	5088826	5088844	CATATCCAAGCCAAATGGG		58	5088710	5088731	GGTGATTAATGTAGTTGATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14608	FBgn0037487	FBtr0113201	1	1	1	95	3R	3063233	3063251	CCATCTACCCACGAATTCC		59	3063308	3063389	TATGAAAGACCTGACAATCGG		59	NA	
Drosophila melanogaster	50	gfzf	FBgn0053546	FBtr0091512	1	1	2	85	3R	2973457	2973475	ATGTGGACAACACAGATGG		59	2972805	2973410	GTAGATGGGTACAATAGAGCC		59	NA	
Drosophila melanogaster	50	Sodh-1	FBgn0024289	FBtr0081627	2	1	1	121	3R	2879973	2880044	TACTGCAATGACTATGCCG		59	2880129	2880147	TTTCGTGACGTTTCAAACG		59	NA	
Drosophila melanogaster	50	Ama	FBgn0000071	FBtr0081619,FBtr0081620,FBtr0081618	3	3	3	65	3R	2589588	2589607	TCTTATATTCTGCCTTGCGA		58	2589635	2589653	CTGATCTGGCTGATCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14644	FBgn0037226	FBtr0078981	3	1	1	278	3R	78269	78287	GACAGGAAATCCTCACTCG		59	77954	78027	AGATCTCCTTGATCTCGAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG33054	FBgn0053054	FBtr0078317	2	1	2	163	3L	21190877	21190895	GTACAAGCATCTTTGGAGC		58	21190610	21190628	TAGACAACAATCTCCAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	chb	FBgn0021760	FBtr0089462,FBtr0089460,FBtr0089461	2	3	3	60	3L	21172357	21172375	GGAGGAACTACGATCACAG		59	21172398	21172417	CTTAGACATGTAGGCGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5618	FBgn0036975	FBtr0078179,FBtr0078180	1	2	2	84	3L	20349366	20349448	AGTCGACTTTACACTGTGG		59	20349495	20349514	CTTTAAGAGGCGAGTAACCA		59	NA	
Drosophila melanogaster	50	Cad74A	FBgn0036715	FBtr0075240,FBtr0075239	1	2	2	94	3L	17363251	17363332	GAATGTCACAGAGAATGCTG		58	17363176	17363194	AAGTAATGGTTCCGGATGG		59	NA	
Drosophila melanogaster	50	CG13481	FBgn0036421	FBtr0113170	2	1	1	60	3L	14362401	14362420	TATGCAAGAGGACATTACCT		58	14362360	14362378	ATGTCTGCCATTGGAAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5897	FBgn0036220	FBtr0076070	1	1	1	60	3L	11881331	11881352	ATTATCAACGGGATAGAGATGG		59	11881292	11881311	TATCCGTAACAGGTCATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3967	FBgn0035989	FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480	3	5	5	121	3L	9410906	9411455	CATCACAAACAGTCCTAACAC		59	9410805	9410823	TCTGTGTTATCTGCTGCAG		59	NA	
Drosophila melanogaster	50	CG4452	FBgn0035981	FBtr0089493,FBtr0089494,FBtr0089495	1	3	3	183	3L	9361224	9361242	AGTGCGAACATTATCTGGG		59	9362075	9362093	CTTGGACATCGGTATACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34426	FBgn0085455	FBtr0112727	3	1	1	81	3L	8796302	8796320	AGACACCTATTGCCAAGAG		58	8796364	8796448	ACAGTAGATGTAGCTAGTGC		58	NA	
Drosophila melanogaster	50	mthl6	FBgn0035789	FBtr0076789	3	1	1	80	3L	7479773	7479793	GAAGATCCGAATTCCATATGG		58	7479835	7479909	AATAGTACCGACCTGAGGT		59	NA	
Drosophila melanogaster	50	CG32245	FBgn0052245	FBtr0073313,FBtr0073311,FBtr0073312	3	3	3	120	3L	4578858	4579453	GTTTGCTTTAAGGTGGTGC		59	4580094	4580112	CATAGGAGTCAATGCAGGG		59	NA	
Drosophila melanogaster	50	CG14997	FBgn0035515	FBtr0073226,FBtr0073225	3	2	2	85	3L	4241426	4241502	CTTTAGGAAGATGGGTCGT		58	4241551	4241569	CTGCGTAATGCTTAACACC		59	NA	
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0110922,FBtr0073132,FBtr0073135,FBtr0110924,FBtr0073131,FBtr0073134,FBtr0110923,FBtr0110920,FBtr0110925,FBtr0073133,FBtr0110921	3	11	11	119	3L	3552855	3578298	GGCAGATTAACAATTTCCCG		59	3578377	3578398	GTTGTATGGAACTTTGTTACCG		59	NA	
Drosophila melanogaster	50	CG17723	FBgn0035432	FBtr0073057,FBtr0073055,FBtr0073058,FBtr0073054,FBtr0073056	2	5	5	87	3L	3312395	3312526	CATATTAGGTGCCGTAACCT		59	3312576	3312594	TGGTAGAGTGGATACCCTC		59	NA	
Drosophila melanogaster	50	CG1291	FBgn0035401	FBtr0073023	1	1	1	63	3L	3145174	3145192	TTCTCTTTCCAAGCATTCG		58	3145217	3145237	TGGAGATAGGAACAAGATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11537	FBgn0035400	FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117	3	5	5	167	3L	3131025	3131118	CATAATATCGACTCTCAACCAG		58	3130879	3130898	CAGGTGAAGAATACTGTGAC		57	NA	
Drosophila melanogaster	50	Dhc62B	FBgn0013811	FBtr0072793,FBtr0072794	2	2	2	83	3L	1769261	1769341	CAAATTCAAGGGTCAAACTG		57	1769197	1769216	ATTGACTGTATCATCGAGGT		58	NA	
Drosophila melanogaster	50	CG12502	FBgn0035171	FBtr0072588	1	1	1	108	3L	869768	869786	TCTTCATAGTCCCGAAGTG		58	869858	869942	TAACTGACTCCGAAACTCC		58	NA	
Drosophila melanogaster	50	tamo	FBgn0041582	FBtr0072281,FBtr0072282	1	2	2	150	2R	20017461	20017544	CTCTCAAGACCTATTCGGG		58	20017329	20017347	ACATTCGTAACCTGATCCG		59	NA	
Drosophila melanogaster	50	CG34205	FBgn0085234	FBtr0112398	2	1	1	187	2R	18018281	18018299	GGTGATCAAGTCCTATGCC		59	18018049	18018067	CGTACGACTTAACAATGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Vrp1	FBgn0034695	FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104	1	7	7	86	2R	17998431	17998841	CAACCTAAATATCTCGTTAGGC		58	17998366	17998384	AGACTGCTGTTTAAGGACG		59	NA	
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708	2	9	9	93	2R	17398737	17398915	TTTGCCAGAGGATTACGTC		59	17398972	17398990	ACCAATCACCGACTTTAGG		59	NA	
Drosophila melanogaster	50	CG30389	FBgn0050389	FBtr0071633,FBtr0071632	1	2	3	88	2R	17043163	17043181	TCTTCATACCCGTTCACTG		58	17043019	17043114	CAAACAGATACCCTTATCTGTG		58	NA	
Drosophila melanogaster	50	CG13349	FBgn0033886	FBtr0087611,FBtr0114495,FBtr0114494,FBtr0087610,FBtr0114493	2	5	5	80	2R	9847383	9847401	GACGATCTCATCGTCTTCC		59	9847321	9847339	CTTAAGCACATAGACACGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13175	FBgn0033693	FBtr0100143	1	1	1	167	2R	8071317	8071335	TAGGAATCGCAAATTGCAG		58	8072027	8072046	GTGGTTATAAACTTTGCCGT		58	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	Cpr47Ef	FBgn0033603	FBtr0088186,FBtr0088187	3	2	2	60	2R	7157262	7157283	AAGGGATCTGAGAATGAAATCC		59	7157223	7157241	CTTCGGGATTTGTGTAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8083	FBgn0025709	FBtr0088561	1	1	3	136	2R	4967665	4967744	ACTGGATCATGAGTTGGAC		58	4967844	4967862	AAATCGAGATCCTCACCAG		58	NA	
Drosophila melanogaster	50	CG1399	FBgn0033212	FBtr0088940,FBtr0088939	2	2	2	122	2R	3565904	3566089	GTCTAAACAGAATGGAACTCC		58	3565802	3565822	AGCTGACTGATACACTATTGG		59	NA	
Drosophila melanogaster	50	Dpit47	FBgn0033083	FBtr0086146	1	1	1	60	2R	2548991	2549012	TCATCAAGAACTACAGATCCTC		59	2548952	2548970	TCTGGCTTGTAGAACAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17082	FBgn0039994	FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289	3	6	6	91	2R	644085	644172	TTCTATTGGTCGATCAAAGGAG		59	644224	644242	CATTCTCTGAGGCTGACAG		59	NA	
Drosophila melanogaster	50	CG5435	FBgn0032431	FBtr0080387	3	1	1	199	2L	12430338	12430356	AAATCATTTCGGGTGTTGC		59	12430073	12430091	TAATAGCGGAAGAAGTTGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5381	FBgn0032218	FBtr0080060	3	1	1	111	2L	10319557	10319634	CGCGATCTAAACGATAATTCC		59	10319402	10319421	CATTTGAGGACAATGAGTCC		58	NA	
Drosophila melanogaster	50	CG3714	FBgn0031589	FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077482,FBtr0077479	3	5	6	115	2L	4190819	4192645	AGAAGTCATTCAGGAGTGG		58	4190722	4190740	GGAAAGATAGGCCAGATCC		59	NA	
Drosophila melanogaster	50	Rbp9	FBgn0010263	FBtr0077636,FBtr0077635	1	2	7	153	2L	2955495	2961223	TTATCCATCACAACAGCGT		59	2961340	2961358	CTGTTGGTCACATTGTTGG		59	NA	
Drosophila melanogaster	50	Eno	FBgn0000579	FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905	3	4	5	84	2L	1727657	1727675	TAAATTTGTGCAGATCCGC		58	1726601	1726619	GGAGTCGTAGATTTGACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31935	FBgn0051935	FBtr0077916	3	1	1	120	2L	1595532	1595607	CAAACTAGCTGACATTCTAAGC		59	1595433	1595452	TATTGACGGAAGTTCATCCG		59	NA	
Drosophila melanogaster	50	CG12061	FBgn0040031	FBtr0113683,FBtr0113682	3	2	3	118	XHet	22997	23088	TACTCAACCGACCAAACTG		59	23169	23188	AAGCCTCATACCACATAACC		59	NA	
Drosophila melanogaster	50	upd3	FBgn0053542	FBtr0113465	2	1	1	70	X	18174156	18174174	GTGGCGATTCTATAAGGGA		58	18174208	18177439	GAAGGTTCAACTGTTTGCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG2444	FBgn0030326	FBtr0073531	1	1	1	60	X	11598591	11598610	GACTTTGTGAACATCAATCG		57	11598550	11598568	TGTCGCAATTGTATTTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)G0237	FBgn0027259	FBtr0073541	1	1	1	95	X	11466148	11466225	TATCTGGGATCCTAGCTGTC		59	11466072	11466090	GCATGCATTACAAAGTCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR42206	FBgn0085833	FBtr0114291	1	1	1	285	U	4660494	4660512	ATACTGGCGTTTCTCACAG		59	4660813	4660833	GGGTACATTTGGCTTAAATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Kif3C	FBgn0039925	FBtr0089196	1	1	1	134	4	1185989	1186007	GACTTAAGGAAGCTTCCCA		58	1186105	1186185	CTAAGGAATCCTGGAGCAG		59	NA	
Drosophila melanogaster	50	CG11077	FBgn0039930	FBtr0089222	2	1	1	60	4	1049498	1049519	CTACCTATCTATATTGGTCCGC		59	1049459	1049477	GAAGTTTAGCATCTGTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085631,FBtr0085634	3	4	5	238	3R	26211978	26212058	GATCTGATCAATGTGCCGA		59	26211758	26211777	ATCTTCTTGAGAGTGGTCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5376	FBgn0038977	FBtr0084292	2	1	1	83	3R	18313859	18313940	TATTCAAGGATCTTAAGTCCGC		59	18313797	18313816	TGTTCAGCTATTTCTTGGCT		59	NA	InUTR
Drosophila melanogaster	50	CG4845	FBgn0038764	FBtr0083829	2	1	1	125	3R	15851271	15851289	TATTGCGACTATGGAGCTG		59	15851376	15851459	AGCGATAGCATCTCTAAACTG		59	NA	
Drosophila melanogaster	50	Ace	FBgn0000024	FBtr0082780	2	1	1	124	3R	9063870	9063889	TACTTCGATAAGGACGATGC		59	9062987	9063783	TCCCAACTGGTATACTGGA		59	NA	
Drosophila melanogaster	50	Pglym87	FBgn0011270	FBtr0082620	2	1	1	60	3R	8057661	8057680	TGACAAGGACATTATGAGCC		59	8057620	8057640	GTCTAGTTCGTAGACGAAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6782	FBgn0037912	FBtr0100464	1	1	4	192	3R	7386919	7390171	GCTGATCACCCTAATTCCC		59	7386745	7386763	TAGGTGATGCAGATCTCGA		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG10298	FBgn0037432	FBtr0081710	1	1	1	92	3R	2168868	2168939	TTACGGTGACTTATGGTGG		58	2168995	2169013	CATCCCATTTCACCTTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2100	FBgn0037369	FBtr0078724	2	1	1	60	3R	1561572	1561590	GAATGATAAACGCAAACGG		57	1561530	1561551	TCCTTGTCATTGATTCTAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11247	FBgn0037120	FBtr0113184,FBtr0078459,FBtr0078458	3	3	3	151	3L	21718590	21718668	CCTATCAGTGTAGGATCTGC		59	21718458	21718476	CATGTGGTTCTTTAGGTGC		58	NA	
Drosophila melanogaster	50	CG11796	FBgn0036992	FBtr0078225	3	1	2	102	3L	20432557	20432642	GACAAAGGAACCAAACCTG		58	20432473	20432492	GTCGAGTGGTATAGTAGCTG		59	NA	
Drosophila melanogaster	50	GlcAT-P	FBgn0036144	FBtr0100422,FBtr0076189,FBtr0076190	2	3	3	89	3L	11171622	11171757	GTGCAGAGATATTCTCACGT		59	11171552	11171570	AGGTTCGTGTTCTTGTAGC		59	NA	
Drosophila melanogaster	50	Hsp67Bb	FBgn0001228	FBtr0100653,FBtr0100655	1	2	2	88	3L	9366346	9366364	CAATCATATTCACCTGCCG		58	9366416	9366502	GTAGATCACCACATTGCTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG8209	FBgn0035830	FBtr0076753	2	1	1	257	3L	7970266	7970284	GAAGAAGATCGTTGAGCAG		58	7970561	7970579	GTTTCCTGTAGTGTTGAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780	3	8	8	128	3L	7811268	7811288	CCAGATGACAAATACAAGGAG		58	7810754	7811178	GTCGGCATATTGTGTTACC		58	NA	
Drosophila melanogaster	50	CG14820	FBgn0035718	FBtr0076894	3	1	1	102	3L	6927067	6927178	CTGTGGATGTTGACTGGAG		59	6927242	6927262	TTATGTAGGCGGTTAGTTGAC		59	NA	
Drosophila melanogaster	50	CG8398	FBgn0035708	FBtr0076980,FBtr0076979,FBtr0076981,FBtr0076978	1	4	4	92	3L	6609616	6609634	AAGCACTTCATTCCCTACC		59	6609687	6609778	GCAGTAGATTATCAGATCTGGA		58	NA	
Drosophila melanogaster	50	5SrRNA:CR33384	FBgn0053384	FBtr0086376	1	1	1	62	2R	15642265	15642283	AATACATCGGTTCTCGTCC		59	15642221	15642239	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Psc	FBgn0005624	FBtr0087798	2	1	1	168	2R	8864872	8864890	ACATCATCTGTCACCTGTG		59	8858022	8862018	GTGTCCGATTTGATGTTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8801	FBgn0028473	FBtr0088554	1	1	1	122	2R	5285615	5285702	CATTTGGTGGACAATGTGG		59	5285511	5285529	CTGTCGCTTCATAATGGTG		58	NA	
Drosophila melanogaster	50	dpn	FBgn0010109	FBtr0088803	3	1	1	158	2R	4119196	4119443	AGCAGAACTTAGAAAGACCA		58	4117961	4117979	GTCATCTCAAGTATGTCGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG40133	FBgn0058133	FBtr0111297	2	1	1	67	2R	38747	46846	AATCTGCTAGCAACAAGGA		58	46877	46895	ATCAGTATGCTTGAGTCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5783	FBgn0032670	FBtr0081049	2	1	1	88	2L	18156496	18156514	TGAATCTGGTGTACAGGGA		59	18156566	18156640	AAATCCAGATGGAGGTTCG		59	NA	
Drosophila melanogaster	50	elfless	FBgn0032660	FBtr0081046	2	1	1	82	2L	18010986	18011007	GGAATCCAAATGAGTATTACGG		58	18010857	18010943	ATACTCCAACAGGAATGGG		58	NA	
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876	3	7	7	169	2L	16472183	16472201	GAATATTCAGAGCCTGCTC		57	16469244	16471862	TCTGGTAAAGCACTCTCAG		58	NA	
Drosophila melanogaster	50	CG15358	FBgn0031373	FBtr0077892	2	1	1	60	2L	1882850	1882868	GGATAGACTGGAAAGCCAG		59	1882808	1882828	TTTCCTATCGAACTTGGAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snmRNA:204	FBgn0065101	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me18S-A1374	FBgn0065080	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:E4:62Ab	FBgn0011852	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30206	FBgn0050206	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi28S-1192c	FBgn0082999	FBtr0113564	2	1	1	64	X	17038248	17038269	CCAATCTAATTCTGCATAGTGG		58	17038205	17038223	GATGGTGATTGTTCTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	roX1	FBgn0019661	FBtr0070634,FBtr0070635	2	2	2	60	X	3755430	3755448	CTCTATCGGATGCATGTGG		59	3755388	3755409	CCTTGTCTACAGTATCATTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15445	FBgn0031161	FBtr0077252,FBtr0077251,FBtr0077253,FBtr0077250	3	4	4	80	X	20989728	20989746	TGTACGAAAGGATCAATCG		57	20989788	20989898	GATCCTCCATCTCTATTAGGT		57	NA	
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089397	1	1	13	165	X	20101684	20104508	CGGATTATTATGTGCTTGCA		58	20101538	20101556	TTCTTGATCTCGAGTGGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG11943	FBgn0031078	FBtr0074798,FBtr0074799	2	2	2	80	X	19747834	19747916	GATCTGGTCTATAGCACGC		59	19747959	19747978	CTTGGAGTTCATGAAGTCGA		59	NA	
Drosophila melanogaster	50	CG14235	FBgn0031066	FBtr0074817,FBtr0074815,FBtr0074816	2	3	3	194	X	19638353	19638371	CATCGCTATAGCTATCGCC		59	19635081	19635099	GAAGTCGATGTACGACTGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Ranbp21	FBgn0031051	FBtr0074759	2	1	1	60	X	19545094	19545114	GAGTACACAATCAAGTACCGA		59	19545054	19545074	CCTTAATGTACACCTTCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS14	FBgn0044030	FBtr0074785	3	1	1	222	X	19373741	19373759	GATTGGAAGATGATTCGCG		59	19373537	19373555	TGTACTTGTGGACAACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15044	FBgn0030928	FBtr0074627	3	1	1	68	X	18385671	18385689	TCATTGTGAACCACTACGA		58	18385621	18385639	GATAGCTCATGAGCACCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mnb	FBgn0002777	FBtr0074542,FBtr0074541,FBtr0100616	3	3	3	115	X	17764008	17764027	ATTCACTGTGATTTGAAGCC		58	17763836	17763930	ATGTAGTGGTAGATCCGCT		59	NA	
Drosophila melanogaster	50	CG8326	FBgn0030851	FBtr0074486	1	1	1	60	X	17522778	17522796	CAAGAGGTTGATACCGAGG		59	17522736	17522756	CAGCATCCTGTTTGAATTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12992	FBgn0030846	FBtr0074450	1	1	1	60	X	17485252	17485271	TTTGATAACTACCAATCGGC		57	17485292	17485312	GAGCGTTGTAATAGGAATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8557	FBgn0030842	FBtr0074434,FBtr0074435	3	2	2	201	X	17357800	17357818	TGTGGACCTTATGATGACG		59	17356148	17357638	CTTGTAATCATTGACTAGTCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9125	FBgn0030793	FBtr0074352	3	1	1	61	X	16696995	16697013	CCTACATTAAGCAACACCA		57	16696952	16696970	TAGATTTCTCGCATCGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211	2	5	5	112	X	16178691	16178711	CTCTATGTCCAGGTCAATCAG		59	16178784	16179063	AATGCATAGCCTACGTAGTC		59	NA	
Drosophila melanogaster	50	mmd	FBgn0041109	FBtr0074156,FBtr0074155	1	2	2	84	X	15857082	15857100	AGATTGGACAATGTCCGTC		59	15856959	15857034	AAGCAGTAACCTGAGATGC		59	NA	
Drosophila melanogaster	50	Graf	FBgn0030685	FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197	3	6	6	81	X	15646356	15646433	AACCAATGTTCGTTACTCC		57	15646293	15646312	ATAGTTCTCCGGAATGAGTC		58	NA	
Drosophila melanogaster	50	CG9123	FBgn0030629	FBtr0074019	2	1	1	90	X	15235867	15235885	CAGCTCCTATGCAAGATCC		59	15235795	15235813	GTCGTAGACGAAGATCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lsd-2	FBgn0030608	FBtr0110969	3	1	3	103	X	14966818	14966838	GGGAACTCAACAAGTTTATGG		59	14966629	14966647	TCCAACTGTCTGTACTGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Flo-2	FBgn0024753	FBtr0073952,FBtr0073950	1	2	6	135	X	14818430	14820800	AATGCAAGATCATGAAGGC		58	14820899	14824789	GTAAGCGTTCCCAATATGG		58	NA	
Drosophila melanogaster	50	CG11071	FBgn0030532	FBtr0073829	3	1	1	289	X	13748717	13748735	CATCCTCAATTTCTTGCGC		59	13748167	13748185	GCTTCGATAGATAGTCCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2574	FBgn0030386	FBtr0073644	1	1	1	60	X	12303646	12303664	AAATTGCTAGACACTGGAC		57	12303688	12303706	TCTCTGTTCTTATCCTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ptp10D	FBgn0004370	FBtr0073525,FBtr0073524	3	2	3	174	X	11567985	11568087	CATACAAATCCCAGCTCGA		59	11568224	11568243	ATTTCCGTCTATGCTGTAGC		59	NA	
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073483,FBtr0073492,FBtr0073491	2	3	12	180	X	11276005	11281814	ATAGCTGATAATCAGCGCA		58	11281958	11282028	GTATCTGTGAAGTCTGGGA		57	NA	
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	2	8	9	95	X	10692568	10692661	CGAATAAGGGTGAAATTTGC		57	10692492	10692510	GCATGATCCGTTTAATGGT		58	NA	
Drosophila melanogaster	50	spri	FBgn0085443	FBtr0112688,FBtr0112689	3	2	4	87	X	10386360	10390835	CGTGAAGTCTTATGTCACC		57	10386291	10386309	CCAATTGAAGGGTGTATGC		58	NA	
Drosophila melanogaster	50	CG15366	FBgn0030080	FBtr0071355	1	1	1	60	X	8967230	8967249	TGGTTATCTAATCACCTGCT		58	8967189	8967207	CAGATTGCTTGCTTTCAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33181	FBgn0053181	FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451	2	5	5	82	X	8409361	8409381	ATTATCGGGATTATACCACCG		59	8409425	8409512	GTCTTCGCATAGGGAACTC		59	NA	
Drosophila melanogaster	50	CG1440	FBgn0030038	FBtr0071197,FBtr0112961,FBtr0112962	3	3	3	92	X	8334503	8334584	GTATCCGTGGATAAGAGCG		59	8334640	8334658	GTTCATCACCAGATAGCCC		59	NA	
Drosophila melanogaster	50	sdt	FBgn0003349	FBtr0089974,FBtr0089977	2	2	7	91	X	8111096	8117667	CCTAAAGCAATGGAATCGC		59	8117722	8117740	TTATGTAGTCATCCGGCAG		58	NA	
Drosophila melanogaster	50	CG10958	FBgn0030004	FBtr0071153	1	1	1	60	X	8028398	8028418	GGATACATTTCTACCCAAGAG		57	8028439	8028458	GACCAGATAGTGATTGTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14430	FBgn0029927	FBtr0071004	1	1	1	62	X	6880912	6880930	GACTATGTGCGAAACAAGG		58	6880953	6880974	CGTATCACAAGTGTAAATGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12219	FBgn0043796	FBtr0070925	3	1	1	100	X	6193554	6193655	AAGCGATATTTGGAGGAGC		59	6193472	6193492	TGGTACATATTCGACTTGGAG		59	NA	
Drosophila melanogaster	50	CG18341	FBgn0029812	FBtr0070816	1	1	1	175	X	5703198	5703216	TTGTCCAAGGGATATGAGC		59	5703353	5703444	CCACAACAGTATATGTGATCC		58	NA	
Drosophila melanogaster	50	CG32767	FBgn0052767	FBtr0070761,FBtr0070760	3	2	2	103	X	4972049	4972158	AACAGGTGTTATTTCGCCA		59	4971964	4971982	CTATCGATAGTGGCACACC		59	NA	Nonspecific
Drosophila melanogaster	50	CG13762	FBgn0040333	FBtr0070444	3	1	1	60	X	2517824	2517842	CATACTACATGCCCGACTG		59	2517782	2517801	CAGTACTTGTCGGAGTAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pck	FBgn0013720	FBtr0070256,FBtr0070255,FBtr0100198	3	3	3	194	X	1365452	1365470	TATCCGTGAGTATCTGCTG		58	1365628	1365700	ATGAACAGAGACGAGATGG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	sdk	FBgn0021764	FBtr0070132,FBtr0070131,FBtr0070133,FBtr0070130	2	4	4	60	X	622716	622734	ATGCCGGATCCATATTCAG		59	622758	624284	TCAAAGATGCCCATGTAGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG13373	FBgn0029522	FBtr0112947	1	1	2	73	X	371950	372049	CTGCGTGACTTTATTTGGT		58	372086	372104	TGAAGAACATCTGGCAGTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CR40959	FBgn0085777	FBtr0114228	2	1	1	176	U	5913930	5913949	TATGTAAGTTGAGCCGTACC		59	5914087	5914106	TCGGTCTAGTAAATACACGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40908	FBgn0085533	FBtr0113946	1	1	1	217	U	2966070	2966088	TAACATCCCAAACCCACAC		59	2966269	2966287	ATCATCATGGATTGGCAGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40339	FBgn0058339	FBtr0113866	3	1	2	72	U	1062793	1062814	CTTGTATACTCCTGTTCTCTGG		59	1062845	1062865	TCGTTATCTCCACATAACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	unc-13	FBgn0025726	FBtr0089246	2	1	3	94	4	906448	906469	GGTGACAATCCATTCTATAGCA		59	904266	906393	GTCTTGAGAACCAGCTCAG		59	NA	
Drosophila melanogaster	50	CG11148	FBgn0039936	FBtr0089250,FBtr0089249	3	2	3	185	4	886493	886569	ACTTGGCAATAACTCTCGT		58	886267	886347	GCCTTTGATATAACCGATAAGC		59	NA	
Drosophila melanogaster	50	gw	FBgn0051992	FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165	3	8	8	80	4	671648	672941	TAACAGCACAGATTGATGGT		59	671587	671605	TCAAATACGGGTGAAAGCT		59	NA	
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450	2	8	8	166	4	157780	157853	TCGAGCAACCTTAAGACAC		59	158041	158059	TAAACCAATTGCTTGCAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	snoRNA:Psi18S-301	FBgn0083039	FBtr0113583	2	1	1	70	3R	16400695	16400713	AACTGTGTCGATTACCGTG		59	16400747	16400765	ACATGTCTGAGTCTTACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	iab-4	FBgn0020546	FBtr0083363,FBtr0083362	3	2	2	104	3R	12677135	12677153	CTTAGCAGGTTTCTTGACG		58	12681555	12681573	GACGTGTCCTTCTATTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	2	14	14	109	3R	27690344	27690863	AAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	Cpr100A	FBgn0039805	FBtr0085710	2	1	1	63	3R	26693838	26693856	CCAGAGGCGTACTATTTCG		59	26693946	26693964	CAAGTGATCTCCAGAAGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	zfh1	FBgn0004606	FBtr0100269,FBtr0085701,FBtr0085702	2	3	3	283	3R	26611408	26611426	ATTAAGCTGCCCGATTACC		59	26611741	26611759	CACTCTATGCACTGGTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9717	FBgn0039789	FBtr0085679	2	1	1	92	3R	26410833	26410851	GGTCTTCATCCTCTACCAG		58	26410568	26410586	TCGGGAGTTAGCATTAGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7912	FBgn0039736	FBtr0085605	1	1	1	196	3R	25832224	25832299	GTTTAACGGCATTGAGGTG		59	25831976	25832064	GTGACTTGAGGTTCAAAGC		58	NA	
Drosophila melanogaster	50	CG31041	FBgn0051041	FBtr0085470	2	1	1	70	3R	25416392	25416410	GTACAACGAGGACTTCACC		59	25416340	25416358	GGTAGCTTGAGTCGATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15817	FBgn0028476	FBtr0085395,FBtr0085396	2	2	2	81	3R	25057749	25057767	TAATTGCATCAGGGAAACG		58	25057812	25057896	GGCTATGTATCCATTTGCG		58	NA	
Drosophila melanogaster	50	CG14260	FBgn0039504	FBtr0085157	3	1	1	72	3R	23091399	23091417	AGAACAAGCGAGTGATCAG		59	23091453	23091471	GTGTAGATGTAGAGGAGCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	woc	FBgn0010328	FBtr0112857,FBtr0085178	3	2	2	86	3R	23083857	23083875	GTACTACGAGCGGTTTACC		59	23083725	23083807	CGAGTGACAATGTATTGCG		59	NA	
Drosophila melanogaster	50	Nep5	FBgn0039478	FBtr0085148,FBtr0113296,FBtr0085147	3	3	3	150	3R	22885911	22885990	AAGTGCATGAGTTCAAGGA		59	22885779	22885797	ATGTAACGAACCCAGATGG		59	NA	
Drosophila melanogaster	50	GCR(ich)	FBgn0029170	FBtr0085101	2	1	1	152	3R	22875873	22875891	GAAGACTCTGGTCTACGTG		59	22876007	22876025	GAGATTCCTCCAGAAATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL34a	FBgn0039406	FBtr0084973	3	1	2	146	3R	21884950	21884968	ATTTCCGGAGAGGTTTGTG		59	21884595	21884614	TTCTTCACGTACTGGTACAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Dak1	FBgn0028833	FBtr0084976	1	1	1	60	3R	21880924	21880942	CAGCAATAGGTTCATCACC		58	21880882	21880902	GCTCATGATTCCGATATTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nf1	FBgn0015269	FBtr0100113,FBtr0084953,FBtr0084952	1	3	3	81	3R	21814617	21814635	GAACATATTCTACCAGGCC		57	21814679	21814751	TTCTCCAATCTTGTATCGTC		57	NA	
Drosophila melanogaster	50	CG11913	FBgn0039331	FBtr0084833	1	1	1	60	3R	21185067	21185086	ATGCGTAATATTGGCATTGG		59	21185107	21185127	CAGTGCATCCATAGTTTAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tnc	FBgn0039257	FBtr0084754	1	1	1	246	3R	20841625	20841736	TTTATCTGCCTCCTGTGTC		58	20841946	20841964	ATACATTTGCAGGACACGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13646	FBgn0039255	FBtr0084751	1	1	1	157	3R	20774503	20774521	CTGATAACTTGCTGCAGTC		58	20774642	20774796	TTTGAAGGAGAGGGATTCC		58	NA	
Drosophila melanogaster	50	CG10899	FBgn0039235	FBtr0084732	1	1	2	80	3R	20682617	20682691	ATAAGGAACCTTGAGGATCC		58	20682556	20682577	CAACTTAGTTATGCTGGATACC		58	NA	
Drosophila melanogaster	50	CG6879	FBgn0039222	FBtr0084695	3	1	1	178	3R	20606605	20606623	CAAGCTCTTCGATCTGGAG		59	20606762	20606848	GGCTGACATTGTTATTGATCAC		59	NA	
Drosophila melanogaster	50	CG5794	FBgn0039214	FBtr0084668,FBtr0084666	3	2	3	140	3R	20465549	20465567	GATAACACTCGTGTTCGGA		59	20465305	20465389	GCTATTTATGTCGCGATAACTG		59	NA	
Drosophila melanogaster	50	CG6726	FBgn0039049	FBtr0084349,FBtr0084348	2	2	2	95	3R	18918259	18918330	GACTCTTTGGCATCTTCGT		59	18918388	18918407	ACCACATAGTTCAGCTTCTC		59	NA	
Drosophila melanogaster	50	p53	FBgn0039044	FBtr0084359	1	1	2	132	3R	18878909	18879084	AGAAAGCACTGATTCCGAG		59	18878662	18878743	ATTCCCGGAGTTTAATCCC		59	NA	
Drosophila melanogaster	50	CG6982	FBgn0039014	FBtr0113267,FBtr0113268	1	2	2	134	3R	18555138	18555156	GATTGGTTAATGGCCTCAG		58	18555254	18555342	CTTAATGTAGCCGACATCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG31343	FBgn0051343	FBtr0084126	1	1	1	80	3R	17572838	17572857	TCTGTACATGTTCAAGAACG		57	17572898	17573120	GTATATTGGTTCTTGGTCAGG		58	NA	
Drosophila melanogaster	50	CG6353	FBgn0038893	FBtr0084116	1	1	1	84	3R	17488563	17488581	GGTGGAATTCAGTAGGGAG		59	17487932	17488449	TCCGTGGATTTGAACATCC		59	NA	
Drosophila melanogaster	50	bap	FBgn0004862	FBtr0084087	2	1	1	89	3R	17215689	17215707	GCCCTGATCAACATCTACC		59	17215760	17215778	GTAGAAGTACGGGAATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084069	1	1	22	82	3R	17200833	17200851	CAGTCCCAGAACTACAGTG		59	17183074	17200787	TACGCAACAGAACCTTGAG		59	NA	
Drosophila melanogaster	50	Mvl	FBgn0011672	FBtr0089521,FBtr0089522	3	2	3	185	3R	16881620	16881699	TTTGTTAATGGACTGGGCA		59	16881390	16881408	AGCCATGTGTATCACAAGG		59	NA	
Drosophila melanogaster	50	CG5621	FBgn0038840	FBtr0110956,FBtr0083978	3	2	2	171	3R	16729758	16729776	CAAGCTGGAAGTCATTGAG		58	16729911	16730012	ATAGGGTTCACTAATGGCC		58	NA	
Drosophila melanogaster	50	Nep4	FBgn0038818	FBtr0083936,FBtr0083937	1	2	2	88	3R	16479501	16479522	CTGCATTATTGCCCAATATAGC		59	16479272	16479452	CTGCGATATTCTCACCCTG		59	NA	
Drosophila melanogaster	50	lrrk	FBgn0038816	FBtr0112788	2	1	1	80	3R	16465956	16465975	GATGAAGCTGGATGATCTCC		59	16466016	16466105	AGACTGACAATGTAGCTTCTG		59	NA	
Drosophila melanogaster	50	CG6231	FBgn0038720	FBtr0083810,FBtr0083809,FBtr0083807,FBtr0083808	2	4	4	86	3R	15444862	15444881	AAATGTGGCGACTTTAATCG		59	15444734	15444816	CGTAAAGTAATGCATCGATACG		59	NA	
Drosophila melanogaster	50	CG7142	FBgn0038595	FBtr0083600	2	1	1	60	3R	14104558	14104576	TATTCACGATCAGAAGGGC		59	14104516	14104535	CACGTAGTAGTCGATGTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cbp20	FBgn0022943	FBtr0083551	1	1	1	82	3R	13990699	13990717	AGTATAAGAAGACGCCCTG		58	13990763	13990905	ATTCACAAATCTCATGGCC		58	NA	
Drosophila melanogaster	50	CG14323	FBgn0038529	FBtr0083498	2	1	1	62	3R	13447716	13447734	ATCATACAGGACCAGAACC		58	13447672	13447690	GACGAAACAAAGTACCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SF1	FBgn0025571	FBtr0083456	2	1	1	89	3R	13367295	13367393	ATTCGATAACTCAGCGGAC		59	13367446	13367464	GGAATGAAGGTCTTGTCGT		59	NA	
Drosophila melanogaster	50	CG17560	FBgn0038450	FBtr0083330	1	1	1	109	3R	12443932	12444007	AAAGGATCCGGTGTTTGAG		59	12444080	12444098	CCGATTGGCTTATACCCAG		59	NA	
Drosophila melanogaster	50	CG12753	FBgn0038427	FBtr0083315,FBtr0100643	3	2	2	80	3R	12266239	12266258	TTTCAGTAATCTGGTCTGGT		58	12266117	12266199	GATTGATGGTCTATATCTGTGC		58	NA	
Drosophila melanogaster	50	mRpS33	FBgn0038426	FBtr0083316	3	1	1	60	3R	12262128	12262146	GAACTACCTCTCAAATCGC		57	12262086	12262104	CATGGACTTCTCGTTTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204	2	6	8	195	3R	11782022	11785052	GACTGATGAGGAACAATGG		57	11785211	11785229	CCAATCGTTGTTAGTCGAG		58	NA	
Drosophila melanogaster	50	CG31302	FBgn0051302	FBtr0083097,FBtr0083096	1	2	3	131	3R	11209088	11209154	CTACTCAAGCCTCTTGAGC		59	11209249	11209267	GATATGGATGATAGGCCGC		59	NA	
Drosophila melanogaster	50	Gyc88E	FBgn0038295	FBtr0083028,FBtr0083027,FBtr0110961	1	3	3	80	3R	11013404	11013425	GTATCAGATGATACCCAAACAG		58	11013465	11013554	CTATCGAACATCTCACAGGT		58	NA	
Drosophila melanogaster	50	RpII15	FBgn0004855	FBtr0082925	3	1	1	60	3R	10135040	10135059	GAATTGCGATTACAAACAGG		57	10135081	10135100	GTGCATAATCTTGTTCACGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	primo-2	FBgn0040076	FBtr0091746,FBtr0091745	2	2	2	67	3R	9536736	9536948	CCTATTATGACATTGGTGAAGC		59	9536690	9536708	ATTCCTACACGCTATGCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31469	FBgn0051469	FBtr0082844	3	1	1	80	3R	9535212	9535230	GCAAGATTCAATTGCTGGG		59	9535092	9535171	CCATGCCTTGAATAAAGTATGG		59	NA	
Drosophila melanogaster	50	CG9611	FBgn0028487	FBtr0082846,FBtr0112939,FBtr0082847	1	3	5	157	3R	9522676	9522694	AAGACTCTGCACGATAGAG		58	9522057	9522557	CGTAGTTTGTATCTATCCGGA		58	NA	
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082802,FBtr0082801,FBtr0082806	2	3	8	96	3R	9488692	9488710	ATCATCCTCTCGTTATGGC		58	9488769	9491189	GTAATCCTTGAGATCCTGCC		59	NA	
Drosophila melanogaster	50	CG10841	FBgn0038163	FBtr0082795	3	1	1	80	3R	9458459	9458538	AGGACTACGAACTAATTGCA		58	9458578	9458599	GTATCTTCATAAAGTGCAGCAC		59	NA	
Drosophila melanogaster	50	CG10841	FBgn0038163	FBtr0082795	1	1	1	80	3R	9459391	9459411	CCAAGATTAAGATACGCATCC		58	9459452	9459530	GTCCACTGTTGAGTTTATCG		58	NA	
Drosophila melanogaster	50	CG9799	FBgn0038146	FBtr0082763	1	1	1	156	3R	9212601	9212680	CAAAGGAAAGGTTGACAAGC		59	9212464	9212482	GAACTTGCGAACAATGACC		59	NA	
Drosophila melanogaster	50	CG8773	FBgn0038135	FBtr0082739	2	1	1	102	3R	9122693	9122791	GAGCGAAATCACTGTAACTG		58	9122856	9122874	ATTCCACAGATCGGTATCG		58	NA	
Drosophila melanogaster	50	snk	FBgn0003450	FBtr0112833,FBtr0082716	1	2	2	81	3R	8866930	8866948	ACAATGTCCCTGTCATCTG		59	8866811	8866885	TACTCCTGACATTTGGTGG		58	NA	
Drosophila melanogaster	50	l(3)87Df	FBgn0002354	FBtr0082703	1	1	1	149	3R	8856858	8856876	TTTCTCTACGGAATCAGCG		59	8856989	8857072	GACGGACCATTGATACCTG		59	NA	Nonspecific
Drosophila melanogaster	50	Octbeta3R	FBgn0053959	FBtr0099995,FBtr0099997,FBtr0099998,FBtr0099996,FBtr0099999	3	5	5	80	3R	8338734	8338873	CTTTCTGTGGTATGTCATCAC		58	8338674	8338692	ATCCAGAATAACACCACCA		58	NA	
Drosophila melanogaster	50	svp	FBgn0003651	FBtr0082564,FBtr0082562	2	2	3	123	3R	8126351	8126617	CCTCACAAGTCATTGAGCA		59	8126704	8126722	CACATCGAAGGCAGATAGG		59	NA	Nonspecific
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082453,FBtr0082454	3	2	6	135	3R	7418337	7419052	ATTTCATTGGTGATGCACC		58	7418220	7418238	TCTGTGTTCTGACCAAAGG		59	NA	
Drosophila melanogaster	50	RpL3	FBgn0020910	FBtr0082349,FBtr0082346,FBtr0082348	3	3	5	94	3R	7048443	7049127	CAAGAACTGGTACAAGAGCA		59	7049184	7049202	GGAAGTCATTCTCGATGCT		59	NA	
Drosophila melanogaster	50	CG14691	FBgn0037829	FBtr0082313	2	1	2	80	3R	6579818	6579898	AATCTAAGCTGGAATTGGTC		57	6579757	6579775	AGTATGTGATTCGAGACCA		57	NA	
Drosophila melanogaster	50	CG31406	FBgn0051406	FBtr0082235	2	1	2	250	3R	6174760	6174778	TTAAGAAATTGCCGACTGC		58	6175535	6175553	CGACTTCTTTAGGCTTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11872	FBgn0037806	FBtr0082229	3	1	1	221	3R	6132865	6132883	AATGGTAGTCTGCCTACAG		58	6133223	6133241	GTAGTAGCAGAAGATGCAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Kap-alpha3	FBgn0027338	FBtr0082108,FBtr0082106,FBtr0082107	2	3	3	123	3R	5402864	5402942	GAAAGACCAGGATGAAATGC		59	5402760	5402778	CTCATCTGTGTTCGAGTCC		59	NA	
Drosophila melanogaster	50	ps	FBgn0026188	FBtr0111029,FBtr0111028,FBtr0111027	1	3	9	98	3R	5258550	5269739	ATTTCAGTTCCGGTGAGTC		59	5270767	5270786	TCATGTGATACGTTGTCTCG		59	NA	
Drosophila melanogaster	50	Fps85D	FBgn0000723	FBtr0082053,FBtr0082051,FBtr0082052,FBtr0082054	1	4	4	90	3R	5194238	5194256	ATGTGGGAGATCTTCTCCA		59	5194103	5194185	GCATACGATATCCCGTATCG		59	NA	
Drosophila melanogaster	50	CG16736	FBgn0037668	FBtr0081985	1	1	1	60	3R	5082689	5082710	CTTAGCGATCTCATAACTATGG		57	5082650	5082669	CTGGTGTCATAATGACTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	D1	FBgn0000412	FBtr0081988,FBtr0081989,FBtr0081987	3	3	3	102	3R	5064885	5065221	GAGAATGAAGACGATCAGG		57	5064801	5064819	ATATGTTCAGGTTGACGGA		58	NA	
Drosophila melanogaster	50	CG9821	FBgn0037636	FBtr0081931,FBtr0081932	1	2	2	178	3R	4644394	4644412	AACATCAGAATGACAACCG		58	4644234	4644252	ATACTGTTGGAATGTGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11753	FBgn0037603	FBtr0081879	3	1	1	141	3R	4478998	4479086	CGAATACCATGAGATCCAC		57	4479191	4479277	GAAGGTGCAACTAAAGTCC		58	NA	
Drosophila melanogaster	50	Cyp313b1	FBgn0037601	FBtr0081893	1	1	1	130	3R	4470311	4470381	AGCTTATAATGGCTTGACC		57	4470199	4470217	TAAACCCAAACAGTATGCC		57	NA	
Drosophila melanogaster	50	puc	FBgn0004210	FBtr0081792	1	1	1	143	3R	3937016	3946244	CTTTATCGAAGATGCACGG		58	3946351	3946369	ACTTTCACCAGCTTGTAGG		59	NA	
Drosophila melanogaster	50	CG10919	FBgn0037514	FBtr0081739	2	1	1	104	3R	3584460	3585208	GCAATTCGTAAGAACCATGG		59	3585275	3585293	TCTTGAGGGTTAAGCTTGC		59	NA	
Drosophila melanogaster	50	Aly	FBgn0010774	FBtr0081642	3	1	1	109	3R	2905011	2905029	TTGGTCCGATAAAGAAGGC		59	2904686	2904705	CTGTTTAATGGCCTTCAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1988	FBgn0037464	FBtr0081632	3	1	2	108	3R	2888851	2888870	AATAGAAGCCATCAAACGAG		57	2889018	2889037	GCACTGTCTCTTTAATTCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Antp	FBgn0000095	FBtr0081652,FBtr0081650,FBtr0081647,FBtr0081654,FBtr0081653,FBtr0081655	1	6	11	158	3R	2724257	2734249	TTGGTAAGTGTCAAGAACG		57	2724117	2724135	AAATCTTTATCTGGCGCTC		57	NA	
Drosophila melanogaster	50	bcd	FBgn0000166	FBtr0081666,FBtr0081667,FBtr0081668,FBtr0081665	1	4	5	92	3R	2582674	2583204	GACGCTACAGATCTTGGAG		59	2582600	2582618	GCTAAGGCTCTTATTCCGG		59	NA	
Drosophila melanogaster	50	Rm62	FBgn0003261	FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653	3	6	6	156	3R	1829624	1829748	AGGAGGAGAAATTGAAGACC		59	1829487	1829505	TTGTCACCGTGAATAGCTC		59	NA	
Drosophila melanogaster	50	Os-E	FBgn0010403	FBtr0078655	3	1	1	79	3R	1802263	1802332	AACTGGCGTTACTGATGAG		59	1802202	1802220	TCATATAGCACTTGAGGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34113	FBgn0083949	FBtr0110806,FBtr0110807	2	2	2	81	3R	1699263	1701808	GATCTATCAGATCTGATGCCT		58	1699202	1699220	TCTGATTGACGCTGTAGAC		59	NA	
Drosophila melanogaster	50	CG1347	FBgn0037363	FBtr0078715,FBtr0078716	2	2	2	183	3R	1503250	1503270	GATATCAACCAGATCCCTCTG		59	1503477	1503744	ATGAGCTGGACTCTAAACG		59	NA	
Drosophila melanogaster	50	noi	FBgn0014366	FBtr0078751	1	1	1	60	3R	1416537	1416555	ACCACGTCTTCGATATTCC		59	1416495	1416517	GTCTCTATGTATATGCGGTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14656	FBgn0037278	FBtr0078878	1	1	1	72	3R	625449	625467	AAGAAGACCTCTCGGAGAG		59	623401	623419	TGAGGTTGTTGTCGTTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	eIF3-S10	FBgn0037249	FBtr0078944	3	1	2	99	3R	258185	258253	CTTATTCGTGAAGTGGTGC		58	258104	258123	GATTCAGTGGGTTGAAATCC		58	NA	
Drosophila melanogaster	50	snoRNA:Psi28S-3308	FBgn0082973	FBtr0113601	1	1	1	63	3L	832544	832562	AAACCGAAAGACTTGACGT		59	832499	832517	AAGTTTCAATTCGCCACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AGO3	FBgn0086780	FBtr0111170,FBtr0111171,FBtr0111172	2	3	3	117	3L	23560302	23561655	TACGGATCTAAAGGTTCATCTG		59	23561733	23561751	GAACAGAGTCAATGGGAGG		59	NA	
Drosophila melanogaster	50	CG14453	FBgn0037179	FBtr0078519	3	1	1	215	3L	22687407	22687425	CTACCACCACTTCTTCGTC		59	22687604	22687622	CTTCGACTGTAGCAATCGT		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	AcCoAS	FBgn0012034	FBtr0078413,FBtr0100592,FBtr0078414	1	3	3	83	3L	21265831	21265849	TCTAAAGCACAACCTGAGC		59	21265711	21265729	TTGTAATACCAGAGCCAGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG34261	FBgn0085290	FBtr0112456	2	1	2	89	3L	21190337	21190414	AAACACATGATCTCCCACC		59	21190467	21190485	TTCCTTAACTTTGGGCCAG		59	NA	
Drosophila melanogaster	50	CG6663	FBgn0036969	FBtr0074843	1	1	1	80	3L	20315022	20315041	ACTGATGTAGAAGTCAAGCT		58	20315084	20315159	TAGTCCAGCGTCATATACG		58	NA	
Drosophila melanogaster	50	CG6680	FBgn0036968	FBtr0074842,FBtr0074841	2	2	2	165	3L	20311902	20311979	CTCATTTCTGAACATCACCAC		59	20312106	20312124	GATCTGGATCACCGAATCC		59	NA	
Drosophila melanogaster	50	CG17233	FBgn0036958	FBtr0074852,FBtr0074851,FBtr0074850	2	3	3	61	3L	20228033	20228051	CCTTCTATCGCAACATGTC		58	20227930	20227951	GAGGTAGAGTTTCTTAGTTTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Shal	FBgn0005564	FBtr0112853	2	1	2	277	3L	19565871	19565890	CTGTACCTGTTATCGTATCG		57	19562902	19565397	AAATTCTCGATCCGTTGTC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG32177	FBgn0052177	FBtr0075210	1	1	1	63	3L	17642118	17642136	TTATGAATGCACAACTGCC		58	17642073	17642091	ATTTGAACCTCCTCGTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pep	FBgn0004401	FBtr0075199,FBtr0075200	2	2	3	126	3L	17636528	17636546	TTCAGGAACCAGAATCCAC		59	17634313	17634331	GGTTATTGAGACGATTGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7589	FBgn0036727	FBtr0075221	3	1	1	88	3L	17466533	17466796	AAGGATTATGCTGGGAACC		59	17466848	17466866	TTATGTAGCTCACCTTGGG		58	NA	
Drosophila melanogaster	50	Fit2	FBgn0036688	FBtr0075275	1	1	1	60	3L	17018910	17018930	CTGAAAGAGCTACAGATTACG		58	17018952	17018970	TAATATTCCGCGAGTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pros26	FBgn0002284	FBtr0075360	3	1	1	64	3L	16602953	16602971	TACGTGTCGAACATTCTGG		59	16602907	16602925	GGATCGTAGGAGTAGACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Smn	FBgn0036641	FBtr0075395	3	1	1	68	3L	16573668	16573688	TACATGTCCGGCTATTATACG		59	16573620	16573638	TTTCTTTCCGCTAGTGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fax	FBgn0014163	FBtr0100477,FBtr0100478,FBtr0075413,FBtr0075412	2	4	4	193	3L	16398660	16398678	ATGAAGGACAAGTGCTTCC		59	16398257	16398431	TCCTTCTCGTTTGACTTGTC		59	NA	
Drosophila melanogaster	50	CG13064	FBgn0040796	FBtr0089378	2	1	1	168	3L	16273697	16273715	TTATCTACCATCACCCGGT		59	16273847	16273865	AGAGGAACATGTTCGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5151	FBgn0036576	FBtr0075488,FBtr0075487	3	2	2	98	3L	16135211	16141508	CATGCTATCGGTACAGACG		59	16135007	16135150	AATTGATCCCTATCATCGGG		59	NA	InUTR
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0075441	1	1	6	60	3L	16070861	16070879	AAGAAGAGCTATGGAACGC		59	16070903	16071931	CTTCTGCAATAGCTTGAGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Fbp1	FBgn0000639	FBtr0075749,FBtr0075750	3	2	2	60	3L	14090843	14090864	GATATCGTCCAGAATATTCGTC		58	14090804	14090823	CCACATCTAGATTGATGAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	stv	FBgn0086708	FBtr0075806,FBtr0075809,FBtr0075807	1	3	5	83	3L	13474163	13474181	GACATGGACAACATGTTCC		58	13474228	13474324	GAAACCAAAGTGTGAGTCG		58	NA	
Drosophila melanogaster	50	mirr	FBgn0014343	FBtr0075912,FBtr0075911	1	2	2	112	3L	12698330	12698348	ATCTGAAGGAGAACCTGGT		59	12698424	12700490	CAAATCCATGCCATAGCTG		58	NA	
Drosophila melanogaster	50	CG6038	FBgn0036198	FBtr0076123	1	1	1	173	3L	11704184	11704202	TGCGGAGAAGTTTAACTGG		59	11703973	11703991	CATCCTTCGTATTTGTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	dpr10	FBgn0052057	FBtr0076310,FBtr0076308,FBtr0076309	3	3	3	84	3L	10143596	10144088	TCATCAGGATAAGGTGCTC		58	10143530	10143548	AATGGATTTGGTCTCCTCC		58	NA	
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385	1	8	8	111	3L	9825956	9826035	GAGTTAACCGGGACTACAC		59	9826110	9826128	CTTTCCCAAACTTAGCCGA		59	NA	InUTR
Drosophila melanogaster	50	ATPsyn-b	FBgn0019644	FBtr0076405	3	1	2	139	3L	9723624	9723642	GAGATCTACGTCATGGAGC		59	9723837	9723855	TCCTTCCACTCAGATTCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5087	FBgn0035953	FBtr0076520	2	1	1	80	3L	8992686	8992760	CACTACTGACTGAAACCAC		57	8992804	8992822	GCCACTGAGTAAATACTCC		57	NA	
Drosophila melanogaster	50	CG5021	FBgn0035944	FBtr0076514,FBtr0076513	1	2	2	140	3L	8960604	8960686	TGAGTCAAAGAACAGTCGG		59	8960790	8960808	ATCATTACCAGCAGTAGCC		59	NA	
Drosophila melanogaster	50	h	FBgn0001168	FBtr0076569,FBtr0100153	2	2	2	108	3L	8670506	8670525	CCCGTATTAACAACTGTCTC		57	8670733	8670751	GTCTTCTCCAGAATGTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6416	FBgn0035917	FBtr0089566	2	1	8	165	3L	8627807	8627826	ATGACAGTATCATGAAGCAG		57	8628171	8630547	TTCTTATAGGGAACTGTGGA		57	NA	
Drosophila melanogaster	50	Atg18	FBgn0035850	FBtr0076693,FBtr0076692,FBtr0076691	3	3	3	124	3L	8181566	8181584	AATATCTGGTGTCCAGCTC		58	8181672	8182396	AAACGAGTAACCCATCCAG		59	NA	Nonspecific
Drosophila melanogaster	50	Ect4	FBgn0085402	FBtr0112598,FBtr0112601,FBtr0112602,FBtr0112600	1	4	5	86	3L	8092629	8096003	TCATTAAGGAAGCCCTCTC		58	8096053	8096071	TTTGCACCGTAATACTGGA		58	NA	
Drosophila melanogaster	50	exex	FBgn0041156	FBtr0076751	3	1	1	297	3L	7942377	7943260	CATGTCGAGATCAGAGTCG		59	7943520	7943674	ATTATGACCCATGGGTATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112702,FBtr0112698	3	6	10	81	3L	7693414	7693498	AACTGTACAAGGAAGTCATCC		59	7693353	7693373	TTAGCTTCGAATGGTTCTACC		59	NA	
Drosophila melanogaster	50	CG8620	FBgn0040837	FBtr0076918	3	1	1	264	3L	7151309	7151328	TGAATTTCTTATCGGGTCAG		57	7151555	7151573	GAGAGTTGAGATTCCTGCT		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	bin	FBgn0045759	FBtr0076900	2	1	1	88	3L	6986012	6986030	CCAATGGATACTACGCCAG		59	6986152	6986171	GTAATCGTAGCTAGCAAAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18769	FBgn0042185	FBtr0076973,FBtr0076970,FBtr0076972,FBtr0076971	3	4	6	164	3L	6544995	6545013	CACCACCCATAGAAGTCTC		59	6555513	6583716	ACATAGATGTCTTCTCCCG		58	NA	
Drosophila melanogaster	50	Lcp65Ad	FBgn0020641	FBtr0076990	1	1	1	66	3L	6136855	6136873	CACGAAGCAATTGTTGTCC		59	6136903	6136921	GAATGCTGTAGGTCTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32407	FBgn0052407	FBtr0077032	3	1	1	97	3L	5916304	5916322	CATCAAGAGCATCATCGGA		59	5916383	5916464	TAAAGGCAGCATCTAGCAG		59	NA	
Drosophila melanogaster	50	CG5568	FBgn0035641	FBtr0077025	2	1	1	60	3L	5865394	5865414	TCACCATTAGCAATAGTCACC		59	5865487	5865505	ATAATCGAGCTATCCACGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Usp36	FBgn0035633	FBtr0077104,FBtr0077103,FBtr0077099,FBtr0077100	1	4	6	83	3L	5765468	5765543	AGAAGAAGGTATCTGCCAC		58	5765590	5765608	TCATGGAGAATCGCTTCAG		59	NA	
Drosophila melanogaster	50	CG13704	FBgn0035583	FBtr0073353	3	1	1	144	3L	4899024	4899042	TACTTGGTGATATGCCTGG		58	4900438	4900456	CTACACAAACGATGAGAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Awh	FBgn0013751	FBtr0073156	2	1	2	83	3L	3860693	3860712	CATTTCAGAATAACGCACAG		57	3860756	3860905	CATCCATAGAGGATTCATGAG		57	NA	
Drosophila melanogaster	50	PHGPx	FBgn0035438	FBtr0073068,FBtr0073066,FBtr0073067	1	3	4	138	3L	3328064	3328082	CTGGTGATCCTCAACTTCC		59	3328251	3328269	TGTCTCCATTCACATCGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12734	FBgn0035411	FBtr0073036,FBtr0073035	1	2	2	140	3L	3183013	3183031	TACAAGATGGTACGCATGG		59	3183134	3183208	TATCAACATCTCACAACGCT		59	NA	
Drosophila melanogaster	50	CG12182	FBgn0028504	FBtr0072955	3	1	1	100	3L	2597137	2597206	GTCCTTTGTGGAGATCTCC		59	2597055	2597073	ACTCGTAGAGTTCTTGCAG		59	NA	
Drosophila melanogaster	50	oxt	FBgn0015360	FBtr0072904	2	1	1	118	3L	2261464	2261482	GAGCACGTTTACTACATCC		57	2261019	2261037	CATATGGTGGAGAATCGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13921	FBgn0035267	FBtr0072773,FBtr0072772	2	2	2	86	3L	1749643	1749725	GAGTGGATAAGGAAGGAGTG		59	1749774	1749792	CTCTCAGGCAGGAATAGAG		58	NA	
Drosophila melanogaster	50	CG9139	FBgn0035202	FBtr0072663	1	1	1	122	3L	1296728	1296746	AGTCTCAGACATTGTGCAC		59	1296830	1296923	GGACTGAAGAGAAATTTGTGG		59	NA	
Drosophila melanogaster	50	CG17129	FBgn0035151	FBtr0072612,FBtr0072614	1	2	3	117	3L	679822	679909	GCAAGAATTTAGCGACCTG		59	679723	679743	CGTTTCAACCATTTAGCTACC		59	NA	InUTR
Drosophila melanogaster	50	CG17181	FBgn0035144	FBtr0072563	3	1	1	246	3L	585229	585247	AATCTCCGACTCGAATTCC		59	584941	585022	CTTATCCATGATTGATCTGTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Mtch	FBgn0027786	FBtr0072477,FBtr0072478,FBtr0072479	3	3	3	124	3L	185190	185209	TAAATTGGTGGGTTCTCTGG		59	185296	185377	ACTGGACGTACAATTCCTC		58	NA	
Drosophila melanogaster	50	CG2765	FBgn0035087	FBtr0113119,FBtr0113118,FBtr0072408	2	3	3	212	2R	20849156	20849175	TTATGGACGACACCATACTG		59	20848861	20848879	AGTTCAGCATGTTGTACAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Tina-1	FBgn0035083	FBtr0100389,FBtr0072411	3	2	2	61	2R	20828509	20828527	TTAGTCTGCGCTACTTGTC		59	20828466	20828484	ATGGCGCATAATGTATGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pof	FBgn0035047	FBtr0072327,FBtr0072328	2	2	2	91	2R	20558283	20558302	TGCAATTTAGACAGAACAGC		58	20558417	20558435	TAGTAAACAACCTGTGGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	gammaSnap	FBgn0028552	FBtr0072187	1	1	1	80	2R	19935374	19935458	AACTAAGGAGGTACGACGA		59	19935312	19935330	TTTGTCCGTAAGATTCCGT		58	NA	
Drosophila melanogaster	50	Phm	FBgn0019948	FBtr0072203,FBtr0072202	1	2	2	100	2R	19873907	19874867	ATTCCCAGATCGTATACGC		59	19873825	19873843	AAGGTACTTGATTGGCGAG		59	NA	
Drosophila melanogaster	50	mr	FBgn0002791	FBtr0072156	1	1	1	83	2R	19860958	19861051	ACTGGAAACTTGGCTATCG		59	19861096	19861116	TCGCTTATGCTATCCTTAGAC		59	NA	
Drosophila melanogaster	50	G-salpha60A	FBgn0001123	FBtr0072143	2	1	3	153	2R	19833770	19833964	AATACCAAACGCCAATCGA		59	19834159	19834179	CATGTGAAATGTGGATAGCAG		59	NA	
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	2	8	8	81	2R	19817734	19817752	TCCATCTTCCTTACTGCTG		58	19817612	19817691	CATCAGTAACCAAGTTAACCC		58	NA	
Drosophila melanogaster	50	Thiolase	FBgn0025352	FBtr0072226	1	1	1	155	2R	19755665	19755683	GAACAGCCAGAATATCGTG		58	19755470	19755488	ATGTAGTCGATGAGCTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2852	FBgn0034753	FBtr0114458,FBtr0071933	3	2	2	60	2R	18533824	18533844	CAGTCGTGAAATATCCATTGG		59	18533784	18533802	AATATTCACAGCGCTTCAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4329	FBgn0034745	FBtr0071939,FBtr0071940	1	2	2	60	2R	18497692	18497713	GGAAGTTGAGATCCTAAAGGAG		59	18497653	18497672	CATCTGTTTCTGGATGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3074	FBgn0034709	FBtr0071785,FBtr0071784	3	2	2	154	2R	18079061	18079174	CATCTCCAACACTCTATGCT		59	18078926	18078944	ACGTGGTATTGTACTTGCT		58	NA	
Drosophila melanogaster	50	Rae1	FBgn0034646	FBtr0071683	2	1	1	60	2R	17546896	17546914	GATGTGGAGTATCCGATGG		59	17546854	17546873	GCGAGTATATGATGAGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sdc	FBgn0010415	FBtr0071707,FBtr0071706,FBtr0071705	1	3	3	142	2R	17299915	17367605	TCAAGATCAGAAATCGGTG		57	17286794	17286815	GATCTTTCTCTAGATCTTCGTG		57	NA	
Drosophila melanogaster	50	Treh	FBgn0003748	FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536	1	6	6	80	2R	16972826	16972845	CTTTAATGCCATGATGGAGG		58	16972887	16972966	GCACTGAAGTACTTATCGAC		58	NA	
Drosophila melanogaster	50	CG11018	FBgn0034464	FBtr0086472	3	1	1	60	2R	15550396	15550414	ACAATGAAACTAATCCGCC		58	15550438	15550456	TTCTTAGGAGCAGTAGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493	1	1	7	109	2R	15488466	15488484	AGTCAAATGACGACCTACG		59	15461560	15488393	CAATTTCTCCGGAACTGTG		58	NA	
Drosophila melanogaster	50	CG15904	FBgn0034458	FBtr0086497	1	1	1	60	2R	15400426	15400445	TGAAGGGCTATTTGGTAAGG		59	15400385	15400403	TCCGATTTAAAGACCCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0100392	1	6	15	104	2R	15361451	15361469	ACGTTATTCCTGCAGAGAC		59	15365203	15366258	CTCTGGTTTGACCAGAGTG		59	NA	
Drosophila melanogaster	50	cora	FBgn0010434	FBtr0086507,FBtr0086509	3	2	4	184	2R	15124300	15124318	TTCAATAGGACTCTGTCCG		58	15124563	15125670	TCCTTATCAGCATCCTTCTC		58	NA	
Drosophila melanogaster	50	l(2)03709	FBgn0010551	FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616	3	6	6	192	2R	14707869	14707887	AGATGATCAACATCTCGCT		58	14708043	14708123	ATGAGTAGGGATACCTGCT		59	NA	
Drosophila melanogaster	50	CG15092	FBgn0034388	FBtr0086641	2	1	1	215	2R	14646633	14646651	TTATACAGACTAGACGCCG		58	14646373	14646454	AATTGCTTAAACCCTGCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG18609	FBgn0034382	FBtr0086643	3	1	1	88	2R	14630818	14630837	AGGTGCTATACAATGGTCTC		58	14630687	14630705	AAAGCTTTCTATGCAGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5190	FBgn0034351	FBtr0086696	1	1	1	60	2R	14339743	14339762	TCACTTACAACCCAGATGAC		59	14339783	14339803	TCGTTGTTCATAGTGTCTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12263	FBgn0034346	FBtr0086691	2	1	1	131	2R	14314961	14314981	GAAAGTAAGGATTGGCAAGTG		59	14315074	14315149	CACCACGGATCTTATCACC		59	NA	
Drosophila melanogaster	50	GstE8	FBgn0063492	FBtr0086676	3	1	1	61	2R	14295952	14295971	CTATTACGAGGAGGCATGTG		59	14295995	14296013	TGAATTTCTTGAGGAGGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18107	FBgn0034330	FBtr0086663	2	1	1	77	2R	14272155	14272174	CAATCGTCACTGTCTTTGTG		59	14272278	14272296	TAACATTTCCTGGATCGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	3	8	8	99	2R	14032395	14032483	AGGAAAGAATTCTGAGAAGC		57	14032544	14032563	CTCAATCATCGGATACAGAC		57	NA	
Drosophila melanogaster	50	eIF3-S8	FBgn0034258	FBtr0086836	2	1	1	237	2R	13553560	13553578	AAGTCAACAAAGATGTCGC		58	13553840	13553859	TCAGGGTATTGGGAATATCC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Psi	FBgn0014870	FBtr0087074,FBtr0087072	1	2	3	145	2R	12753591	12753667	ACGTTATGCAACGAAATGG		59	12753464	12753485	GGGAACTAGGAATGTAATTTCC		58	NA	
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087272,FBtr0087270	3	2	7	91	2R	11845435	11845506	GATCTGCCTTATTCCAAGGA		59	11845363	11845382	ACCTCGCAGAATATGATGAC		59	NA	
Drosophila melanogaster	50	sli	FBgn0003425	FBtr0087304,FBtr0087302,FBtr0112831	2	3	5	138	2R	11773782	11773800	TGACCGTGATATACGAGAC		58	11772979	11773607	TTGTTGGAGATGTCCAGTC		59	NA	
Drosophila melanogaster	50	CG30091	FBgn0050091	FBtr0087277	1	1	1	80	2R	11569378	11569396	ATCCCAAATTCGTTAGCCT		58	11569440	11569525	GAATCGATTCCGTGTACTG		57	NA	
Drosophila melanogaster	50	IM10	FBgn0033835	FBtr0087654	1	1	2	80	2R	9295384	9295402	CACTGTCACAATCGATAGG		57	9295445	9295520	TTGAAACCGTTTCAGTAGTG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Mp20	FBgn0002789	FBtr0005009,FBtr0087745	2	2	2	81	2R	9134625	9134644	CATCAACAACTTCCAGAAGG		58	9134688	9134706	CTTCTCGTACAGATCGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nacalpha	FBgn0086904	FBtr0087860,FBtr0087858,FBtr0087859	3	3	3	70	2R	8647773	8647791	GGAAGATCATGCTGAAGCT		59	8647721	8647739	CTTCGACTTCCTGATCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30048	FBgn0050048	FBtr0100374,FBtr0087919	3	2	2	60	2R	8284191	8284211	ATTCCCTTGAGAAGTATTCCC		59	8284233	8284251	GCTGCATATGTCCTTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8841	FBgn0033713	FBtr0087964,FBtr0087965	1	2	3	84	2R	8212163	8212181	ATACTGTTGCTCCTATCGG		58	8212027	8212045	CAGGTATATCCATGGGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13163	FBgn0033712	FBtr0087896	1	1	1	60	2R	8209537	8209557	TCTCGATTATTCCAGTAGCTC		58	8209579	8209597	ATTGTATTGGAAGTGGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8964	FBgn0033674	FBtr0088027	2	1	1	135	2R	7911662	7911769	TCAAATGGATGAGGGAAACC		59	7911546	7911564	ATTTGACCCTGGCTATTGG		59	NA	
Drosophila melanogaster	50	CG8298	FBgn0033673	FBtr0088043	1	1	2	147	2R	7876824	7876898	CGCTTTCTGATATACTCAACG		58	7877007	7877081	TATAGGCGGTCTCTATGCA		59	NA	
Drosophila melanogaster	50	RnrS	FBgn0011704	FBtr0088046	1	1	1	62	2R	7871809	7872335	ATGTACAAGAAGGCTGAGG		58	7871765	7871783	AAGGTCCTTGGACAAATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9080	FBgn0033593	FBtr0088191	2	1	1	300	2R	7129653	7129671	ATGAAACAGTACCTGGTGC		59	7129371	7129389	ATCCACCTCTGGGATATCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13229	FBgn0033579	FBtr0088206	3	1	1	86	2R	7028205	7028312	CTCTACAGATTCAACTTCTGGA		59	7028140	7028160	CATAAGTACTGCACTGATCAC		58	NA	
Drosophila melanogaster	50	mthl13	FBgn0050018	FBtr0088220	2	1	1	89	2R	6679692	6679713	CGTATTCTGCCTATTTCTTGAC		59	6679760	6679861	ATGATATAACCTGTCAGTGAGC		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089342,FBtr0089349	1	2	26	186	2R	6419759	6419777	TGAGGATTTGACACTGGAC		59	6408769	6419548	GTCGTACTTCAGGTCTTGG		59	NA	
Drosophila melanogaster	50	CG12901	FBgn0033513	FBtr0088354,FBtr0088353,FBtr0088355	1	3	3	79	2R	6244034	6244052	AGAAGGAGAAGGATAAGGG		57	6243973	6243993	TTCTTATCCCTATTCCTTGCC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Hr46	FBgn0000448	FBtr0088368	1	1	4	161	2R	6096768	6096955	AATTACAACAGCTACAGCG		58	6096625	6096643	ATCGATTATTGTACTGCGC		58	NA	
Drosophila melanogaster	50	CG8258	FBgn0033342	FBtr0088683	2	1	1	123	2R	4793179	4793197	GACAAAGTTTGCATCGAGG		59	4793010	4793031	CAATGTCATCCATGAAGTTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	stmA	FBgn0086784	FBtr0088715,FBtr0100111,FBtr0088716	2	3	3	113	2R	4618186	4618264	TTTATCCTCGGAATCCAGC		59	4618091	4618109	ACTAACACGCGAGATTAGC		59	NA	
Drosophila melanogaster	50	CG11635	FBgn0033283	FBtr0088739	2	1	1	70	2R	4246441	4246459	CAAGAACGGTCCTTACCAG		59	4246493	4246511	CGCAGATTATCTTCTTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12159	FBgn0033232	FBtr0088889	3	1	2	166	2R	3803413	3803431	CTGCTGCTTATTATGAGGG		57	3802674	3802904	TAAACCTGAACCAACTCGA		58	NA	
Drosophila melanogaster	50	CG1358	FBgn0033196	FBtr0088950,FBtr0088949,FBtr0088948	3	3	3	95	2R	3490720	3490922	TAATAACCCGCTACTATGGC		59	3490644	3490662	AACTGCCTGGGAATATGAG		59	NA	
Drosophila melanogaster	50	blow	FBgn0004133	FBtr0088952	2	1	1	108	2R	3472588	3472606	AAACCAACAACTACCAAGC		58	3470371	3470389	ATAGGTTCGAGGTGTTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088988,FBtr0088989,FBtr0088990	3	3	9	92	2R	3362872	3362952	AATAAATGCAGGAGATCGG		57	3361300	3361318	GGTTGTGATGTGAAGATCC		58	NA	
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012	2	6	7	107	2R	3293620	3293715	CAAATATGACTTCAAGCCAGC		59	3287508	3293552	CCGGAACTTTCAGAATTTGG		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111081,FBtr0111069	3	2	60	82	2R	3229661	3229679	CGGATTCTATTCGTGTCAC		57	3219874	3229615	ATCTGGGAGGTACATTCAC		58	NA	
Drosophila melanogaster	50	Gadd45	FBgn0033153	FBtr0089049	1	1	1	239	2R	3136988	3137006	GATCGATATGGCCATGGAG		59	3137209	3137227	TTGATCACGTAGATGTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11060	FBgn0033149	FBtr0089045	3	1	1	60	2R	3064395	3064413	AGCGATAGCTTTCAAGAGG		59	3064437	3064455	CCTGACTCTCGACAATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spn4	FBgn0028985	FBtr0086197,FBtr0086196	3	2	11	108	2R	2764774	2764792	TCAGCCATCATACACAAGG		59	2764586	2764604	CCTCAGGCGACATAATAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Epac	FBgn0085421	FBtr0112636,FBtr0112635	1	2	2	92	2R	2653106	2653124	AATGGATCCGTTCTTGGAC		59	2652233	2653050	CAGTGGAAGTAATTGGCCA		59	NA	
Drosophila melanogaster	50	Vha16	FBgn0004145	FBtr0086150,FBtr0086153,FBtr0086151	3	3	4	81	2R	2519556	2519575	CTTCTTCGGAGTTATGGGAG		59	2515389	2515407	GGTACCAGACTTAGCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7882	FBgn0033047	FBtr0085965,FBtr0085966	3	2	2	184	2R	1846716	1846792	TCTTCATCGAGAGCTACAG		58	1847006	1847024	AATAAAGTTGCACAGCCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11163	FBgn0025693	FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053	1	4	4	80	2R	1662571	1662644	GCATCTCGTTACAGACTCC		59	1662509	1662529	TTATATCTTGGGCTGGATACG		59	NA	
Drosophila melanogaster	50	vlc	FBgn0010633	FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039	1	4	4	105	2R	1591797	1591817	CCAGATATCTCCGAAGATACC		58	1591884	1591954	TATTGTGGCAAAGACCCTC		59	NA	
Drosophila melanogaster	50	vlc	FBgn0010633	FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039	2	4	4	106	2R	1591797	1591817	CCAGATATCTCCGAAGATACC		58	1591885	1591955	TTATTGTGGCAAAGACCCT		59	NA	
Drosophila melanogaster	50	CG41120	FBgn0069931	FBtr0111231	1	1	1	72	2L	22667742	22667760	TGTTAGGAATTGCTGGTGG		59	22667688	22667707	CGTAAGGCATTAATACCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17493	FBgn0040010	FBtr0111255	1	1	1	60	2L	22443016	22443034	TTGAGCTGTTTCACAAACG		59	22443058	22443076	ACACAAGTTTACGGTTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6675	FBgn0032973	FBtr0085936	2	1	1	60	2L	22109674	22109692	CTCTTTCAATCGGGATGTG		58	22109716	22109734	AACGATCACATTGTACTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6691	FBgn0032971	FBtr0085935	1	1	1	60	2L	22080583	22080602	CCATGGAACAGTTTAAGGAC		58	22080624	22080643	TGAATGCTTTCCTGACTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9248	FBgn0032923	FBtr0081470	2	1	2	174	2L	21159050	21159068	GGAGAACGCAAATAGAACC		58	21159280	21159298	CTTGTACTGATGCAGTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33322	FBgn0053322	FBtr0081455	2	1	1	81	2L	20815067	20815148	CCAGATCGACTACATGAGC		59	20815004	20815022	AATGTATTGACCCTGGTCC		58	NA	
Drosophila melanogaster	50	CG18094	FBgn0032791	FBtr0081243	3	1	1	60	2L	19490661	19490679	ACTTCCTATGCATTGAACC		57	19490700	19490721	GATCTTCTATAGGATCGAAGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0081213,FBtr0081212,FBtr0081210	1	3	6	177	2L	19410626	19426206	GATGCTCTATTAGCCGACC		59	19410401	19410485	AGTGCTCTTGATACACCTG		58	NA	
Drosophila melanogaster	50	CG17544	FBgn0032775	FBtr0081218,FBtr0081217,FBtr0081216	3	3	3	84	2L	19392115	19392133	CAGTGAGGAAGCAATTTGG		59	19391948	19392069	GGAAAGATGCGATATTGATGC		59	NA	
Drosophila melanogaster	50	CG10750	FBgn0032769	FBtr0081196	1	1	1	86	2L	19301275	19301293	CTACAACCTGGACAAGGAG		59	19301343	19301415	TAGCTGGGAACAATGTCTC		58	NA	
Drosophila melanogaster	50	mib2	FBgn0086442	FBtr0081142	2	1	1	99	2L	19037964	19038095	TCAAGTTGGAGTTCGTCAC		59	19038158	19038176	GTGATAGTTGGGACACTGG		59	NA	
Drosophila melanogaster	50	CG31751	FBgn0086909	FBtr0081092	2	1	2	62	2L	18679132	18679150	CGATCGCAACTTCTTTGTC		59	18682279	18682297	CAGTGGGTTACAATGAGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15133	FBgn0032619	FBtr0080948	2	1	1	81	2L	16895764	16895782	TTCACCACCTAAGACTAGC		58	16895826	16895905	CATTTCATCCGGTATCTCTG		57	NA	
Drosophila melanogaster	50	CG31809	FBgn0051809	FBtr0113414	3	1	1	81	2L	16853857	16853965	TCATGGATTACAGTACGCC		59	16853794	16853813	CATTCGCTTAAAGAGTTGGT		58	NA	Nonspecific
Drosophila melanogaster	50	CG31782	FBgn0051782	FBtr0080938	2	1	2	111	2L	16702251	16728201	CGAATATGGATCCTCGTATACC		59	16702161	16702179	TTGTAACTACAGTAGCGCG		59	NA	
Drosophila melanogaster	50	CG31815	FBgn0051815	FBtr0080870	1	1	1	60	2L	16606949	16606967	CGTCAGATGAACCAATTCC		58	16606991	16607009	ACCTTTGGATAGTTCTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dac	FBgn0005677	FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876	2	7	7	116	2L	16467746	16468063	AAACTATTCCGAATCCCTGG		59	16467649	16467667	TTCTTGTAGTATGCCGTCG		59	NA	
Drosophila melanogaster	50	cni	FBgn0000339	FBtr0080849,FBtr0080848	1	2	2	98	2L	16309918	16310008	CATATACGGCATGGTTTATTCG		59	16309841	16309859	ACAACTAATACACGACGCT		59	NA	InUTR
Drosophila melanogaster	50	CG31822	FBgn0051822	FBtr0080813	2	1	1	86	2L	15836977	15836995	AGTTCAAGGAATCTTTGGC		57	15836815	15836833	TGTGCCACATACTAATCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CycE	FBgn0010382	FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775	3	5	5	98	2L	15729492	15729578	ATACATTTAGTCGGGAGATGG		59	15729414	15729432	AGATCACTCGGAAGAATGG		58	NA	
Drosophila melanogaster	50	CG31771	FBgn0028873	FBtr0080605	3	1	1	117	2L	14040737	14040755	AGAAGAGACGGACAAAGAG		58	14040360	14040378	CATCCGTATCCGTATCTCC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	sec71	FBgn0028538	FBtr0080537,FBtr0080538	1	2	2	95	2L	13798752	13798770	TTTCTTCAAGATGTACGGC		57	13799015	13799033	TAGTAGTTGGAAACGTGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Pect	FBgn0032482	FBtr0080440,FBtr0080441,FBtr0080439	2	3	4	104	2L	13208266	13208284	CATCAAATGGGTGGATGAG		58	13208351	13208430	GTAATGTCATCTCCATGCAC		58	NA	
Drosophila melanogaster	50	CG5204	FBgn0032473	FBtr0080433	2	1	1	82	2L	13162315	13162334	ACTGATCTCAGTTATTGCGG		59	13162436	13162454	AAATCTTCGGGTTCCTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	nub	FBgn0085424	FBtr0112642	3	1	2	120	2L	12614101	12614120	GATAAGGTCCTGGAACTGAC		59	12614201	12622983	GACTGATATCATTTGGGTCCT		59	NA	
Drosophila melanogaster	50	Patsas	FBgn0029137	FBtr0080363,FBtr0080362	3	2	2	60	2L	12102830	12102848	AAATGTGCTCCTCTTTGAG		57	12102788	12102806	GAAGATGTCGTCCAAACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SCAR	FBgn0041781	FBtr0080148	3	1	1	90	2L	10981420	10981499	TTCGAGATGGTATTACTCTACG		58	10981550	10981568	AAGATTGAAGCCACATCCA		59	NA	
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486	2	9	10	161	2L	10831341	10831359	TGTCACAGGATTATCGGTC		58	10826070	10830602	TCGAGCAGGAAAGAATCTC		59	NA	
Drosophila melanogaster	50	KdelR	FBgn0022268	FBtr0080023,FBtr0080021,FBtr0080022	3	3	3	60	2L	10427496	10427515	TCAATCATGAGTTTACCGTG		57	10427537	10427556	ACCGATTCCAAATAGATCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS27A	FBgn0003942	FBtr0080016	2	1	1	113	2L	10410037	10410247	CTGAAATACTACAAGGTTGACG		59	10410321	10410339	GTAGTGACGATCTTCGTGG		59	NA	
Drosophila melanogaster	50	CG18854	FBgn0042174	FBtr0079919,FBtr0079920,FBtr0079918	2	3	3	81	2L	9789414	9789432	GCCTCTACTGACAGATGAC		59	9789291	9789371	AACTATTAGGCAGAGGTTTGG		59	NA	
Drosophila melanogaster	50	ppk11	FBgn0065109	FBtr0100831	2	1	1	81	2L	9773422	9773440	CGTGTCTACTACGACTCAG		58	9773284	9773380	CAAAGGTTCCTATGAATGTCAG		59	NA	
Drosophila melanogaster	50	Ggamma30A	FBgn0028433	FBtr0079796,FBtr0079797,FBtr0079795	1	3	3	82	2L	9272595	9291061	AATCCATAGCAGAAATGCG		58	9291107	9291125	ATTGTTCTTCTTATCCGGC		57	NA	Nonspecific
Drosophila melanogaster	50	CG32982	FBgn0052982	FBtr0079771,FBtr0110960,FBtr0079772	2	3	3	169	2L	9156576	9161132	GGGACAGTTTATCTTCAAGGT		59	9161263	9161397	TCATTGTGCATTCCTCCAG		59	NA	
Drosophila melanogaster	50	CG17906	FBgn0032086	FBtr0079762	2	1	1	82	2L	8994954	8994972	TGGATCTCACACTACACCA		59	8995015	8995098	TCTGGCATGGTTAATGATAGAG		59	NA	
Drosophila melanogaster	50	Hnf4	FBgn0004914	FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846	1	4	4	99	2L	8688854	8688935	TCTTCTTCGATCCCAATGC		59	8688773	8688793	CGATCTGATATGTAGTCCTCG		59	NA	
Drosophila melanogaster	50	CG13394	FBgn0032037	FBtr0079717,FBtr0079718	2	2	2	63	2L	8391199	8391291	CAAAGCGACTTACAAGGGA		59	8391154	8391172	AGAAGGTACTCATCCACGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8419	FBgn0031999	FBtr0079589	2	1	1	81	2L	8208388	8208459	TTGATTTGGAGAAACGCAC		58	8208503	8208522	TCTACATCAGCACCAATCTC		59	NA	
Drosophila melanogaster	50	Rapgap1	FBgn0085403	FBtr0112604,FBtr0112605,FBtr0112603,FBtr0112606	2	4	4	94	2L	7499877	7499898	CGGATAAATTCAGTGTGAACAC		59	7499746	7499824	ACTGCAGGTATTTAGATTGGG		59	NA	
Drosophila melanogaster	50	Spn27A	FBgn0028990	FBtr0079321	3	1	1	60	2L	6672928	6672946	CATGGCATCTACTGAAGAC		57	6672886	6672906	GAGATGATCACATTCTTGTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9107	FBgn0031764	FBtr0079226,FBtr0079225	3	2	2	60	2L	6024121	6024139	GAACCCTTCTCCAACACTC		59	6024079	6024097	TCTCGAACACTATGTAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9016	FBgn0031751	FBtr0079151,FBtr0079152	3	2	2	81	2L	5923198	5923216	TAGCACCAAAGAGTTAGCG		59	5923135	5923154	CTATTCCGGTAAGATGTGGA		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG31646	FBgn0051646	FBtr0079114	2	1	1	97	2L	5641946	5645467	TTCCCGAGAAAGATCTTCC		58	5641867	5641885	CAAATTGTCGACTACGCAC		59	NA	
Drosophila melanogaster	50	CG6907	FBgn0031711	FBtr0079096	3	1	1	63	2L	5524884	5524902	GTCAAGACTACCTTGTGGG		59	5524929	5524947	AGAACTCCTCGTCAATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cl	FBgn0000318	FBtr0079095	2	1	1	137	2L	5520502	5520520	CAAGGACGAGAAAGGAGAG		59	5520694	5521147	AAATCCTTCCAGTATGCCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Msp-300	FBgn0053715	FBtr0091707,FBtr0091705	1	2	3	92	2L	5111000	5111021	AGTCATATCAAGGAGAAACGAG		59	5117629	5121684	TGGAACACGCTTCAATAGG		59	NA	
Drosophila melanogaster	50	CG31919	FBgn0031674	FBtr0079007,FBtr0079006,FBtr0100270,FBtr0079008	2	4	4	116	2L	5047102	5047120	AGATGGATCCACATAGTGC		58	5047198	5047284	CGTTATAGATAGCTGCATTCC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG31917	FBgn0031668	FBtr0079037	2	1	1	94	2L	5010273	5010291	GTCATGTCCAAGAAGTTGC		59	5010197	5010215	TTGACGAGAAAGTATTCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jon25Biii	FBgn0031653	FBtr0079056	3	1	1	61	2L	4950669	4950687	AGGTCTTCGTAAAGGACCT		59	4950626	4950644	GTATCCGTTGGTGATACGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15630	FBgn0031627	FBtr0077418	3	1	1	67	2L	4735849	4735867	GATTATGCTTTCGAGGAGG		57	4735719	4735737	ACCAGGTAAACGGTATCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	tim	FBgn0014396	FBtr0114526,FBtr0077564,FBtr0077565,FBtr0100349,FBtr0077567,FBtr0114527,FBtr0100350,FBtr0077566	1	8	8	80	2L	3503185	3503260	TGAAGATGAGGACGAAGTG		59	3503123	3503144	GGTTGTTGTGTTAAGTTTAGGG		59	NA	
Drosophila melanogaster	50	Su(dx)	FBgn0003557	FBtr0077824,FBtr0077823,FBtr0077822	1	3	3	80	2L	2040349	2040429	TCACAGTGCTGATTACACC		59	2040473	2040491	CAAGCATGGCATCTTTACG		59	NA	
Drosophila melanogaster	50	CG4629	FBgn0031299	FBtr0077990,FBtr0077992,FBtr0077991	3	3	3	135	2L	1085632	1085650	CGTTTACCTGGTCACTGAG		59	1085301	1085535	CAGACTGTGCATATGTTTGAC		59	NA	
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437	3	6	10	141	2L	110859	110877	TATGATGACTCCTCCAAGG		57	112011	112699	ACATGATACCCTGATCTCC		57	NA	
Drosophila melanogaster	50	CG40143	FBgn0058143	FBtr0113807	1	1	1	60	XHet	7119	7137	ACAGACACAATTACACCAG		57	6976	7098	CAAATGTATCTATGAGTGCTCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	tty	FBgn0015558	FBtr0077225,FBtr0077224	2	2	2	97	X	21207506	21207819	GATGAGATCTACCTGGAGAG		58	21207428	21207447	CGGGTCATGAGATAGAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1631	FBgn0031101	FBtr0077297	2	1	1	94	X	20198736	20198813	GATAGCGAAGATGAGAGCT		58	20198871	20198889	AAGTCGCTGTCTGATTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7280	FBgn0030966	FBtr0074655	2	1	1	77	X	18741341	18741422	CGTAAAGGGTCTTTCATGG		58	18741282	18741300	CTTAGAATGTCGCACAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9782	FBgn0030763	FBtr0074288	1	1	1	210	X	16510370	16515373	TACTTCAACATCTGCCTGC		59	16510178	16510196	TTTCCTCGTCATACTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dah	FBgn0015926	FBtr0074007	3	1	1	136	X	15224065	15224145	GATATGCGACAGCTATCAC		57	15224245	15224263	AATAGCATCTGTCGCTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12540	FBgn0030570	FBtr0073929	2	1	1	296	X	14390352	14390579	AAACAGGAAAGTTCAACGC		59	14390964	14390982	GTCGTAGTACAAACACTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG1837	FBgn0030329	FBtr0073551	3	1	1	123	X	11612686	11612706	GGTCGAGAACCTTAATATTGG		58	11612791	11612870	CAAACGCTGACAATGACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12065	FBgn0030052	FBtr0071217,FBtr0071215,FBtr0071214,FBtr0071216	1	4	4	95	X	8481474	8481494	ACTACACGGACTATAAGAAGC		59	8481550	8481631	GTTTCTCCTTGCTATTGCTG		59	NA	
Drosophila melanogaster	50	CG32732	FBgn0052732	FBtr0071039	3	1	1	60	X	6853052	6853072	TTTCATCTACTATGGCGATCG		59	6852959	6853030	GTCTACGAAACCATTGTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG40188	FBgn0058188	FBtr0113822	1	1	2	169	U	2233171	2233189	ACAGACGAGATCTCTTTGC		59	2233322	2233401	TACATTGCAAAGGTTGGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41245	FBgn0085571	FBtr0114014	3	1	1	250	U	1551683	1562191	AAAGAACTGGAGGAATTGG		57	1567259	1567277	GCTATTCGCTCAGTAACAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG41314	FBgn0085609	FBtr0114053	1	1	1	139	U	1495088	1495106	ATTGAAATACTCGCCACAG		57	1492547	1494985	ATATTGGTCGTTGCTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1674	FBgn0039897	FBtr0089118,FBtr0089119,FBtr0089117	3	3	4	84	4	254903	254921	CCAACATCCATTGCATCTG		59	254969	257036	TTTGGTCATTGACATTCGG		58	NA	
Drosophila melanogaster	50	CG33978	FBgn0053978	FBtr0100021	1	1	1	81	4	185015	185100	CACTTTCTCAAAGACTCCAG		58	184953	184971	CTGTCCTCGATCAATTGTG		58	NA	
Drosophila melanogaster	50	CG31371	FBgn0051371	FBtr0085687	1	1	1	157	3R	26327965	26328121	AATATCCAAGTCCACGGAG		58	26327826	26327844	GATCTGAACTGACAGGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113301,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	2	8	8	81	3R	24639526	24639610	TTGACAATGAGTCTGATGC		57	24639654	24639673	CAATATCCGTAGCAGTAAGG		57	NA	
Drosophila melanogaster	50	CG10011	FBgn0039590	FBtr0085319	2	1	1	60	3R	24435946	24435964	CATCTCTAGTCAGTCCACG		58	24435841	24435859	TTGCTGTGTAAAGGTAAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5028	FBgn0039358	FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290	3	5	5	126	3R	21507753	21507830	AACTACGGTGACCATTACG		59	21507919	21507938	CCAGATGGTTCAACATATCG		58	NA	
Drosophila melanogaster	50	CG6631	FBgn0039206	FBtr0084645	1	1	2	81	3R	20358456	20358475	GATTGTGCTGAATTAACGGA		58	20358516	20358593	GTATAATGTTAGCATCGGTTGG		59	NA	
Drosophila melanogaster	50	CG6129	FBgn0039152	FBtr0084545,FBtr0084544	1	2	2	91	3R	19953062	19953140	AGAACCAGATCTCAATGCT		58	19953195	19953213	TTCTCTATTGGCCTTCGAG		58	NA	
Drosophila melanogaster	50	Pros26.4	FBgn0015282	FBtr0084520	3	1	1	60	3R	19756429	19756448	AGAGACTTACGCAGATATCG		58	19756388	19756406	AACAGACTCCTTGATCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17623	FBgn0038999	FBtr0084299	2	1	1	76	3R	18491006	18491024	TAAATCGGATGCGGAATCC		59	18491061	18491082	GCTTGTTTGGATAGTACTATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17270	FBgn0038828	FBtr0083994	1	1	1	65	3R	16643148	16643233	TACATTCACTACAAGCCGG		59	16643101	16643119	ATAGAAGACCATGGTGAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Cyp12a4	FBgn0038681	FBtr0083731	2	1	1	267	3R	14962155	14962234	TTGATACGACATCGAGCAC		59	14962465	14962483	TTCACGTAAGTTCCAGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7131	FBgn0038598	FBtr0083598	3	1	2	112	3R	14113252	14113327	AAAGCTGTCCTATCAACCG		59	14113158	14113176	AATCGTGTTTCTGAGTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14383	FBgn0038102	FBtr0082724	1	1	1	60	3R	8814027	8814048	GAAACTATATGCTACTGCTCCT		59	8813988	8814007	GGATAACCCAACGATTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5844	FBgn0038049	FBtr0082591	1	1	1	75	3R	8260856	8260874	ATGAGGTGATGTTCACGTC		59	8260913	8260990	TTGAAGGTCTGGTTGAACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3281	FBgn0037967	FBtr0082511	2	1	1	119	3R	7788214	7788285	ATTGAAGTGGACATGGACG		59	7788113	7788131	TGTAAAGTTTCATGGGCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ugt35b	FBgn0026314	FBtr0082375	2	1	1	61	3R	6995716	6995736	TCAGAGATGTGTTTATCCCAG		59	6995603	6995696	GCTCAGTTCGTTTATCAATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31373	FBgn0051373	FBtr0082318	2	1	1	109	3R	6534604	6534779	CCGTCTTCATTAATCCGGA		59	6534513	6534531	CTTATCGTACCGTTCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10098	FBgn0037472	FBtr0081563	1	1	1	292	3R	2950431	2950449	GAACTTTGATCATCGGTCG		58	2950773	2951147	AGTCAAGCGCACTATATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1129	FBgn0037279	FBtr0078871,FBtr0078870	2	2	2	75	3R	639630	639648	GTGGAGTTTGCCAATAAGC		59	639686	639967	AAATAACCTGACGACATCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0100500	3	1	15	210	3R	117958	117976	TAACGCTGTCACTCTTACC		59	121000	121299	TGATGTTGTACTTATCGCG		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	nrm	FBgn0005629	FBtr0111148,FBtr0078565	3	2	2	80	3L	22995473	22995492	AAGTTCAATATCCCTATCGC		57	22995535	23000437	ATGGTGGTATCAACTTGTG		57	NA	
Drosophila melanogaster	50	Arf79F	FBgn0010348	FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0112859,FBtr0078571,FBtr0078572	3	7	7	111	3L	22863021	22863042	GGAAATGAGGATATTGATGGTC		58	22862864	22862951	CACATTGAAACCAATGGTAGG		59	NA	
Drosophila melanogaster	50	CG33169	FBgn0053169	FBtr0078549	3	1	2	84	3L	22857221	22857239	TTCGTCTACTTGAAGACCC		58	22857287	22857305	ATTCAATTGCACTGACCAC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG11249	FBgn0037115	FBtr0078429	3	1	1	92	3L	21665738	21666029	GAGATCAAACACCATCTATTGG		58	21666082	21666100	CTTTACGATCAGGCTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6014	FBgn0027542	FBtr0078346	1	1	1	193	3L	21404666	21412712	TCTTAACCAATAGCCCGTC		59	21412866	21412887	GATAAATACTTGACAGCACCAC		59	NA	InUTR
Drosophila melanogaster	50	CG12971	FBgn0037078	FBtr0078402	1	1	1	277	3L	21349321	21349581	CTTAAAGCGAAGGTCTCCA		59	21348877	21348895	CATTTGGACGCATGTACTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	AlCR2	FBgn0036789	FBtr0100242,FBtr0089387	1	2	2	103	3L	18480884	18480902	ATCAGGAAACTTCACACCG		59	18480586	18480817	ATGTACGCACTTATGACCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Syx8	FBgn0036643	FBtr0075365	1	1	1	83	3L	16579603	16579621	GACTCGAGGTTCTATCAGC		59	16579485	16579556	TATTGTTCTGGTCCTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5392	FBgn0036463	FBtr0075671	2	1	1	69	3L	15004342	15004360	TAGTGAGGCAATCGATAGC		58	15001089	15004310	ATCATATGATTCTCCGGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	bmm	FBgn0036449	FBtr0075699	2	1	1	88	3L	14770855	14771040	AATTCACGCTCTATGACCAG		59	14770786	14770804	CACAAGGATTGAAACACGG		59	NA	
Drosophila melanogaster	50	CG6149	FBgn0036158	FBtr0076180	2	1	1	284	3L	11428586	11433333	AAAGCATAGCTCCATCGAC		59	11428320	11428338	AGAGATCTCAATCGGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CalpB	FBgn0025866	FBtr0076343	2	1	1	178	3L	9883648	9883884	CTTATGAAGCACTCAAGGG		57	9884026	9884044	TTCCAGAACATGTGGATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpS17	FBgn0005533	FBtr0076479	3	1	1	229	3L	9422422	9422809	TCGAGCAACATAATGGGTC		59	9422152	9422171	AACTTGATGGAGATACCACG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	Shc	FBgn0015296	FBtr0076458	3	1	1	64	3L	9420378	9420396	ACCTCAATGAAATCCCTGG		59	9420424	9420504	ACTCGATTGATGCACTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Shc	FBgn0015296	FBtr0076458	1	1	1	62	3L	9420380	9420398	CTCAATGAAATCCCTGGAC		57	9420424	9420504	ACTCGATTGATGCACTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7066	FBgn0035869	FBtr0076707	2	1	1	79	3L	8298065	8298136	GAAAGTGGTCTAGATGCGA		59	8298179	8298197	AGCAGAGGAAAGCAATAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	pbl	FBgn0003041	FBtr0112817,FBtr0076772,FBtr0076773,FBtr0076774,FBtr0076771	2	5	5	80	3L	7895286	7895304	TTTACAATTACGCGATGCG		59	7895150	7895242	GATTGACCAGCTTTGTCAG		58	NA	
Drosophila melanogaster	50	Tsp66A	FBgn0035786	FBtr0076861	3	1	2	250	3L	7460902	7460922	GGAGATGTACTTCGAATATGG		57	7461194	7461272	TACCTCAATGCATATGACTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Cpr65Az	FBgn0035686	FBtr0076996	1	1	1	69	3L	6154287	6154364	CCGATGGTTCTTATATGTACGA		59	6154394	6154412	TTCAAGTAGCCCATCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acp65Aa	FBgn0020765	FBtr0077021	1	1	1	98	3L	6145673	6145772	AATTGATGCTAGTCGTTGG		57	6145593	6145611	TGTTCTCCGATTCGTACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33514	FBgn0053514	FBtr0091456	1	1	1	60	3L	4365741	4365760	GGACTATTTCCGAGTTACCA		58	4365783	4365860	ACCCGTTTGATGAATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL28	FBgn0035422	FBtr0073097,FBtr0073095,FBtr0073096,FBtr0073098	2	4	4	87	3L	3221936	3221954	CAATTGGTTGATCATTCGC		57	3221695	3221885	CAAGTTGTTTGGCTCTGTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12734	FBgn0035411	FBtr0073036,FBtr0073035	1	2	2	140	3L	3183013	3183031	TACAAGATGGTACGCATGG		59	3183134	3183208	TATCAACATCTCACAACGCT		59	NA	
Drosophila melanogaster	50	CG1139	FBgn0035300	FBtr0072845	3	1	1	160	3L	1972188	1972272	GAATCCCACTACAAACTTTCAG		59	1972393	1972411	AAATGTGCAGGCAGTAGAG		59	NA	
Drosophila melanogaster	50	mu2	FBgn0002872	FBtr0072857,FBtr0072856	3	2	2	81	3L	1945491	1945509	TGTAAGTCCCAATGAGGAG		58	1945373	1945448	CTGACAGATCTTCTGATAGTG		57	NA	
Drosophila melanogaster	50	n-syb	FBgn0013342	FBtr0072816,FBtr0072819,FBtr0072818	1	3	5	177	3L	1636901	1636920	GCATAGAGTACCTTCATCCT		58	1635683	1635953	CCTGTTCCTTGTTCTTGTC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13897	FBgn0035160	FBtr0072601	3	1	1	60	3L	738522	738540	GTGCACTCAAGATTGAAGC		59	738480	738498	ACTTGCTCGCTCTTAAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	miple	FBgn0027111	FBtr0072505,FBtr0072504	1	2	2	148	3L	268950	269104	CAAAGATAAAGCTGCTCGC		59	269216	269234	ACAGTTAACGTCGTTACGA		58	NA	InUTR
Drosophila melanogaster	50	CG7047	FBgn0035103	FBtr0072535,FBtr0072534,FBtr0072536	3	3	3	136	3L	177250	177268	ATAAAGTGCAGAGTGTCCC		59	177066	177152	AAATACTCGATGGTCTCAGTG		59	NA	
Drosophila melanogaster	50	CG30430	FBgn0050430	FBtr0072448	1	1	1	64	2R	21017163	21017181	CTACTACCCTTGCTGTAGC		59	21017209	21017227	TATAGAATCCGCATCGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	betaTub60D	FBgn0003888	FBtr0072270	2	1	1	99	2R	20193660	20198262	AGTTCTGGGAGATCATTTCC		59	20198324	20198342	TTGTAGTAGACACTGACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sox14	FBgn0005612	FBtr0072158,FBtr0072157	2	2	2	179	2R	19868267	19871083	GAACCAAGAAACATTCGCC		59	19871225	19871244	TTATGTACGGCTGCTTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Klp59D	FBgn0034827	FBtr0071968	3	1	1	60	2R	19031576	19031595	GACATGAGCTTTAACCACAC		59	19031618	19031636	CTTGGATATCCACGTTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp58c	FBgn0034769	FBtr0071920	2	1	1	62	2R	18593641	18593719	AGCGAAGAGAATACCTCCA		59	18593597	18593615	GAATTGCTTGGACATTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34040	FBgn0054040	FBtr0100095	1	1	1	60	2R	17720597	17720686	GTGCAACAATACAGAGGAC		58	17720555	17720573	TTGTACAGCCGTTAGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10320	FBgn0034645	FBtr0113102,FBtr0113101	2	2	3	214	2R	17545965	17545983	ATTGAAGGATCCATGGCTG		59	17546220	17546238	CCTTATCTCCGTGTTCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4302	FBgn0027073	FBtr0071625	1	1	1	143	2R	17101864	17101939	GCCAGAAATTAAGGAGATGAC		58	17101741	17101759	ATTACTGCCTGAATCTCCG		59	NA	
Drosophila melanogaster	50	Fem-1	FBgn0034542	FBtr0086245,FBtr0086246	2	2	2	83	2R	16551360	16551447	GCAATAATGTATCGGTAGATCG		58	16551298	16551317	TAAGATTGTGGTTCTCCACC		59	NA	
Drosophila melanogaster	50	Mctp	FBgn0034389	FBtr0110970,FBtr0110971	3	2	2	109	2R	14660396	14660473	TATGTCCAGAGCTGTTTCG		59	14660544	14660564	AGAACTAGAGGTACTGTCTCC		59	NA	
Drosophila melanogaster	50	CG6429	FBgn0046999	FBtr0087044	3	1	1	75	2R	12760751	12760769	CAGGATCACTTGGGATCAG		59	12760808	12760895	AGAACTATCCGTCAATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8195	FBgn0034032	FBtr0087353	3	1	1	80	2R	11452073	11452091	CTGCTAGTCATCGGTATCC		59	11451955	11452029	ATTCTGCTCCATCATAGCA		58	NA	
Drosophila melanogaster	50	CG12159	FBgn0033232	FBtr0088889	2	1	2	147	2R	3803014	3803411	TTATAGGCTCCGACTTTCC		58	3802673	3802903	TTAAACCTGAACCAACTCG		57	NA	
Drosophila melanogaster	50	sPLA2	FBgn0033170	FBtr0088972,FBtr0100138	3	2	3	70	2R	3330817	3330835	ACGAGATTATCGAGTCCCA		59	3330869	3330954	CTTGAGGATGGGAAACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp42Ej	FBgn0033132	FBtr0089030	3	1	1	231	2R	2928037	2929080	ATTCTCATTGTGACGTGCA		59	2929329	2929347	TGAAGGTGAAGAGGTAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8335	FBgn0033069	FBtr0085990	1	1	1	86	2R	2088447	2088467	GAGCTAAGGTGTATCTAAAGC		57	2088515	2088589	CCATAACCTGATTGTCACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15216	FBgn0032978	FBtr0085940	3	1	1	113	2L	22161311	22161697	TATCGAAACTTCTCGGCAG		59	22161774	22161792	TGCTCCTTGGAATAATGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tio	FBgn0028979	FBtr0089377	1	1	1	66	2L	22023095	22023113	ATGTTCGATCAGCTCAGTG		59	22023143	22023383	TGTTGTTAAAGCAATGCCC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG31619	FBgn0051619	FBtr0110959,FBtr0085901,FBtr0085902	3	3	3	119	2L	21712957	21713036	ACTTAACGAACGATCGGAG		59	21713118	21713137	CCATCATCTGTATCCTGTCC		59	NA	
Drosophila melanogaster	50	Aats-asn	FBgn0086443	FBtr0081162	3	1	1	130	2L	19131671	19131800	TTGGGTGCAATCTTTACGT		59	19131559	19131577	ACGTAAATCGTGGGAAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31788	FBgn0051788	FBtr0081056	1	1	1	68	2L	18257756	18257834	TTGAGTCTTTCGATTGGAC		57	18257706	18257724	TTACTACACGCTGTTTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0110935,FBtr0080978,FBtr0080975,FBtr0110934,FBtr0080977,FBtr0080976	2	6	6	131	2L	17400944	17400962	GTCGTCCTGGTATCTTACG		59	17401056	17401129	GCTTGCACTCAAAGTATCTG		59	NA	
Drosophila melanogaster	50	CG7968	FBgn0028532	FBtr0080551	2	1	1	147	2L	13849608	13849689	AGAACTTTGGTTGCAATGG		58	13849800	13849818	TAGTTTGTGCTCTTCAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5458	FBgn0032478	FBtr0080437	1	1	1	60	2L	13183653	13183838	CCAATATAGGCCTCTACATAGG		59	13183858	13183877	CAACCTCTACCTTGTCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33305	FBgn0032351	FBtr0080221	3	1	1	61	2L	11159922	11159940	ATCGCGATGAATACAGTCC		59	11159729	11159898	CATGGCATTAAGCATTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Stam	FBgn0027363	FBtr0080143	2	1	1	220	2L	10859430	10859448	ACAAGGTAACGACCAATCC		59	10859632	10859709	TTTCAGTGAAACCTTTGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	SamDC	FBgn0019932	FBtr0079994	2	1	2	121	2L	10340804	10340879	CTACTGTGAAATCTGGTATCG		57	10341009	10341028	ATGAATTGTCATGTACTCCC		57	NA	
Drosophila melanogaster	50	CG31717	FBgn0051717	FBtr0079977	1	1	1	60	2L	10250969	10250988	ATCTGTCGTTCTTCAAATCC		57	10251011	10251029	CCATCGCATGATATCTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9541	FBgn0032083	FBtr0079785	1	1	1	80	2L	8971317	8971335	CTTGGAACTCTTTCGTGAG		58	8971186	8971273	TCTCCATCAACAATCTGCA		58	NA	
Drosophila melanogaster	50	CG3430	FBgn0031875	FBtr0079350	3	1	1	286	2L	6958282	6958360	CCCAAAGAAGGATTATGAGAC		58	6958672	6958692	CCTTAGAATCGGCATTAATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18304	FBgn0031869	FBtr0079367	1	1	1	80	2L	6934897	6934998	CAAGGAACAATTACAGAGCAC		59	6934837	6934855	TTCACCTGTTGCTCATAGC		59	NA	
Drosophila melanogaster	50	ifc	FBgn0001941	FBtr0079179	2	1	1	146	2L	5986883	5987624	AACATCACCGTTACCAAGG		59	5987732	5987752	GGTTAATAATCAGTGGACGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33124	FBgn0053124	FBtr0113449	1	1	1	80	2L	2208657	2208678	AAGATGAACGAGTATCTGATGG		59	2208538	2208618	CGAAATGAAACTCGCTATCAG		59	NA	
Drosophila melanogaster	50	CG7420	FBgn0031344	FBtr0077933	1	1	1	105	2L	1501996	1502014	GAACAATCGTGGTCAACTG		59	1501849	1501867	GCTAATGGTTTCCACAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Plc21C	FBgn0004611	FBtr0078047,FBtr0078048,FBtr0078051,FBtr0078050,FBtr0078049	3	5	5	103	2L	344853	344871	GTCACTGGAGAGGTTATGC		59	344937	345017	CGTTTCATTCTGATCAGCTC		59	NA	
Drosophila melanogaster	50	tRNA:CR31575	FBgn0051575	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:28S-A2113	FBgn0086039	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG7192	FBgn0030894	FBtr0074527,FBtr0074528	1	2	2	83	X	17992531	17992619	TGAATGATATACCTACACTGCC		59	17992469	17992487	ACAAGATCTGACGTTCCAG		59	NA	
Drosophila melanogaster	50	mnb	FBgn0002777	FBtr0074542,FBtr0074541,FBtr0100616	2	3	3	81	X	17764201	17764295	CTACATCGTTAAGCTCAAGC		58	17764139	17764158	GTACAGGTTGTATGAGAGCA		59	NA	
Drosophila melanogaster	50	yin	FBgn0015565	FBtr0070632,FBtr0070633,FBtr0070631	3	3	3	174	X	3759040	3759114	GATGCCAACTAAAGCTGTG		59	3758884	3758903	CAAAGATCCTGCGTTAATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3071	FBgn0023527	FBtr0070398	1	1	1	60	X	2158050	2158068	CAAGAGGTTGATCACACCA		59	2158090	2158110	CATCGTAGGATTTCAATCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33521	FBgn0053521	FBtr0091473,FBtr0091471,FBtr0091472,FBtr0091470	1	4	4	80	4	1210308	1210519	CGAATCTGGAATAAGCAAAGC		59	1210560	1210579	ACATGATTGCTTAAACCCGA		59	NA	
Drosophila melanogaster	50	ey	FBgn0005558	FBtr0100396,FBtr0100395,FBtr0089235	1	3	4	179	4	728297	731562	TGTCACAGTGGAGTAAATCAG		59	731701	733131	TGTTTCATAATACCTCCCGAG		59	NA	
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0089130,FBtr0089131	1	2	5	112	4	363633	363651	GTATGAATCTGGGTGAGGA		58	350957	363558	GCCTATTACTTGTGTTTGCA		58	NA	
Drosophila melanogaster	50	CG1746	FBgn0039830	FBtr0085773,FBtr0085774,FBtr0085772	2	3	3	207	3R	27043629	27043647	AGTACTTGCGACCATTGAG		59	27042878	27042897	AATACTGTTCCGATACCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7829	FBgn0039703	FBtr0085531,FBtr0085532	1	2	2	60	3R	25643310	25643328	CATAGTGTCCATCCAACTG		57	25643268	25643289	GTGGTTATTTATTATGGAGCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	1	7	8	81	3R	24639657	24639675	TACTGCTACGGATATTGGC		58	24639719	24640879	GCTCAAACACCTTATAGCAG		58	NA	
Drosophila melanogaster	50	CG10170	FBgn0039085	FBtr0084420	1	1	1	60	3R	19360327	19360345	TTTCCTACCACTTCAGCTC		58	19360285	19360303	TTAACTAGAGCCTTTGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0112915	2	11	12	120	3R	17033377	17036518	CTATCAGATCTGGAAGAGGAC		58	17036600	17036618	TTACAAGAAGCTGGGTGTC		59	NA	
Drosophila melanogaster	50	Stat92E	FBgn0016917	FBtr0089486,FBtr0089485,FBtr0089487	2	3	5	80	3R	16367272	16367417	TCGAAGACAGGATAATGTCC		58	16367211	16367229	CTTCGTTGAACTTTAGGGC		58	NA	
Drosophila melanogaster	50	CG3995	FBgn0038472	FBtr0083428	2	1	1	62	3R	12868654	12868672	TAAGCAAGCACATGAACAG		58	12868610	12868628	ATTTGTACTTGGAGTTCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4699	FBgn0038364	FBtr0083175,FBtr0083176,FBtr0083177	2	3	3	109	3R	11622600	11623024	CTCTCGCTACCAATCACTC		59	11623096	11623115	TTCATCTCCAAATCGGTCAG		59	NA	
Drosophila melanogaster	50	CG9611	FBgn0028487	FBtr0082846,FBtr0112939,FBtr0082847	3	3	5	158	3R	9522676	9522695	AAAGACTCTGCACGATAGAG		59	9522057	9522557	CGTAGTTTGTATCTATCCGGA		58	NA	
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	3	8	8	284	3R	9504401	9504476	ACACGACGTAAATCAGGAG		59	9504723	9504742	TTTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG10512	FBgn0037057	FBtr0078297,FBtr0078300,FBtr0078298	2	3	4	297	3L	21199477	21199495	GATGCCATTAGGAGGATCC		59	21200565	21200583	CTTCTTCTCCTTGTCTCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	chb	FBgn0021760	FBtr0089462,FBtr0089460,FBtr0089461	2	3	3	60	3L	21172357	21172375	GGAGGAACTACGATCACAG		59	21172398	21172417	CTTAGACATGTAGGCGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	skd	FBgn0003415	FBtr0078328,FBtr0112830,FBtr0078329	2	3	3	80	3L	20989472	20989492	TTCTAACATTCGAGGAAGAGG		59	20989353	20989430	TGTCCATATGAGTGTCCCA		59	NA	
Drosophila melanogaster	50	Eip71CD	FBgn0000565	FBtr0075553,FBtr0075552,FBtr0075555,FBtr0075554	2	4	4	69	3L	15505788	15505806	TCATAACCACTGAGATTGC		57	15505898	15505916	AACCTATACTTCTGGTGGT		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG3967	FBgn0035989	FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480	3	5	5	121	3L	9410906	9411455	CATCACAAACAGTCCTAACAC		59	9410805	9410823	TCTGTGTTATCTGCTGCAG		59	NA	
Drosophila melanogaster	50	CG3967	FBgn0035989	FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480	1	5	5	116	3L	9411532	9411550	AACAATTTCGTGCTCTACG		58	9410905	9411452	TGTGTTAGGACTGTTTGTG		57	NA	
Drosophila melanogaster	50	lqf	FBgn0028582	FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794	1	6	6	80	3L	7527254	7527341	GCAGGATTTCAAGGATCCA		59	7527383	7527403	AGCAGATCTAGCAAATGACTC		59	NA	
Drosophila melanogaster	50	CG11537	FBgn0035400	FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117	1	5	5	80	3L	3130292	3130310	GGTCTCGGTCTTTATAGCC		59	3130170	3130248	CCAAACACTTGCATGAAGG		59	NA	
Drosophila melanogaster	50	Tkr	FBgn0003715	FBtr0072458,FBtr0100126,FBtr0072457,FBtr0072456	2	4	4	179	2R	20981955	20981973	GGTAAGGAGTTTGGAAAGG		57	20979236	20981812	GAGACCAAACATATGTGGC		58	NA	
Drosophila melanogaster	50	nvy	FBgn0005636	FBtr0072267	2	1	1	192	2R	20177064	20177082	GTTCTTCATGGAGATGAGC		57	20177296	20177314	CCAATCCCTGTACTGACAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4266	FBgn0034598	FBtr0113100	2	1	2	152	2R	17054802	17054820	GAATATGTCAAGAGCTCGC		58	17054539	17054687	CTTCTTCTCGTCTAACAGGT		58	NA	
Drosophila melanogaster	50	CG5721	FBgn0034315	FBtr0086771	1	1	1	60	2R	14070540	14070561	GAGATCATGAGTTCGAATTTGG		59	14070501	14070519	GTAGCAACTTTAAGGCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k07433	FBgn0022085	FBtr0086950	2	1	3	82	2R	13408430	13410372	TAATGAATCTGTGCGGTCC		59	13408366	13408384	GTATTCAACGGCATTCAGG		58	NA	
Drosophila melanogaster	50	CG30081	FBgn0050081	FBtr0087365	2	1	1	60	2R	11095982	11096003	TTTATTCCTACACTCCGTATCC		59	11096023	11096042	GGTTCCGTATGAATATCGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	3	12	12	93	2R	6499952	6500255	GCATATGGACATGTATAACTCG		58	6500309	6500327	ATTCGTATAGTGCGGTTCC		59	NA	
Drosophila melanogaster	50	CG2269	FBgn0033484	FBtr0088407,FBtr0088408,FBtr0088409	1	3	3	114	2R	5982474	5982563	CTATCTATGTGGTGCCTCAC		59	5982640	5982658	GATCATCAGGATGGAACGG		59	NA	
Drosophila melanogaster	50	CG30492	FBgn0050492	FBtr0088913,FBtr0088914	2	2	6	144	2R	3517705	3517723	CTACATCTGCCTCATGGAG		59	3517831	3521736	CTTATTGGCTAGTTTGCCC		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111068	1	1	60	96	2R	3244971	3244989	ATGAGATTAACTACGCCCG		59	3236469	3244911	AACTTGTACCATCGGAAGG		59	NA	
Drosophila melanogaster	50	CG17266	FBgn0033089	FBtr0086144	2	1	1	91	2R	2563161	2563180	CAAATACAGTCCCAACTGAG		58	2563023	2563041	TCGAATATCATTCGTCCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)37Bb	FBgn0002021	FBtr0081177	2	1	1	61	2L	19050059	19050079	CGTACTACAACAATCTGTACC		58	19050018	19050036	CAGAGATTGCTGTACTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kuz	FBgn0015954	FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660	2	5	5	86	2L	13634171	13634249	CACCTACAGAGATTTCACTG		57	13634298	13634316	TACTTCTCGCAAATTCCAC		57	NA	
Drosophila melanogaster	50	Pten	FBgn0026379	FBtr0089905,FBtr0089902,FBtr0089901,FBtr0089903,FBtr0089900,FBtr0089904	1	6	6	83	2L	10259082	10259101	GTTGATATGTGGCTCAAGGA		59	10258905	10259036	GATCATGGTACCGGTTCTG		59	NA	
Drosophila melanogaster	50	Aats-ala	FBgn0027094	FBtr0079721	2	1	2	256	2L	8380660	8380682	GATCTAACTACGATACCGATCTG		59	8380303	8380321	ATTCAACTTCTCAGTGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Liprin-alpha	FBgn0046704	FBtr0079301,FBtr0079300	1	2	2	80	2L	6726526	6726602	CAGAAAGAGGATCAGGAGG		58	6726646	6726664	ATGCAACGATGTAGACTCC		59	NA	
Drosophila melanogaster	50	Ugt37b1	FBgn0026755	FBtr0079242	1	1	1	60	2L	6226478	6226496	GATCGTCCTCTAAGTCCTC		58	6226519	6226538	GGTATCGAATCACATACTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ade2	FBgn0000052	FBtr0079220,FBtr0079221,FBtr0079219	2	3	3	126	2L	6042148	6042166	GGAGGGTGTCAATAGTGAG		59	6041977	6041995	AATTAGTCCGCGGTATTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	chic	FBgn0000308	FBtr0079233,FBtr0079235,FBtr0079236,FBtr0079234	2	4	4	112	2L	5976614	5976632	CACTGCATGAAGACAACAC		59	5973584	5973605	CCGCAAGTAATCAGATAATCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Jon25Bi	FBgn0020906	FBtr0079054,FBtr0100432	1	2	2	60	2L	4954701	4954719	GCACATGGTTAACAAGGTG		59	4954659	4954678	GTTGTCGTACATGTTGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3714	FBgn0031589	FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077482,FBtr0077479	1	5	6	114	2L	4190819	4192645	AGAAGTCATTCAGGAGTGG		58	4190723	4190741	GAAAGATAGGCCAGATCCC		59	NA	
Drosophila melanogaster	50	CG2964	FBgn0031462	FBtr0077722	2	1	1	70	2L	2814017	2814035	ATTGTGATAGTGAGTGCCT		58	2814069	2814087	AAGAAAGCGTAGACCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rho-4	FBgn0030318	FBtr0073518,FBtr0073517,FBtr0073519	2	3	3	82	X	11498696	11498777	ATACATTTCCAGGACGATCC		59	11498822	11498840	TTGTAGATGAACAGGGTGG		58	NA	
Drosophila melanogaster	50	antdh	FBgn0026268	FBtr0073468	3	1	1	85	X	11062400	11062498	ATCAAGATTACGAGCGTCAG		59	11062334	11062352	AGCATTCGATCCTTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11160	FBgn0030257	FBtr0073390,FBtr0073391	3	2	2	133	X	10943050	10943070	AACTGAAGGATACTTACTGCC		59	10943165	10943238	CGTACATGATGAGTCCTCG		59	NA	
Drosophila melanogaster	50	CG34417	FBgn0085446	FBtr0112705,FBtr0112704	2	2	5	84	X	6481127	6482107	AGGAATATGAGAACGTCCA		57	6482155	6482173	AAGAAATGGTGTATCAGCG		57	NA	
Drosophila melanogaster	50	Eph	FBgn0025936	FBtr0089085,FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086	2	5	5	80	4	640348	640367	GAGTAGTTCTATGGGAGGTC		58	640407	640492	CTATACTCTTTATCACGTCCTG		57	NA	
Drosophila melanogaster	50	CG5316	FBgn0038704	FBtr0083759,FBtr0083760,FBtr0083758	2	3	3	176	3R	15229536	15229625	ATCTTTCACTTGAACCGGAG		59	15229764	15229782	GCTTGTTGATACGAAGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yrt	FBgn0004049	FBtr0082793,FBtr0114376,FBtr0114374,FBtr0114375	1	4	4	94	3R	9257648	9257666	CTCAAGTCCAACTTCAGCA		59	9257511	9257593	TAGTCTGGATCCAATTTCACAG		59	NA	
Drosophila melanogaster	50	CG8359	FBgn0037634	FBtr0081919	1	1	1	203	3R	4632099	4632117	TAAAGTTCTTCGATCGGCA		59	4632284	4632355	ACTATTTCCTGCTTCTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1427	FBgn0037347	FBtr0078702,FBtr0078703	3	2	2	83	3R	1427574	1427643	TATAGCCTGCAAACTCGTG		59	1427689	1427708	GGTTGTGCCTCTAGTAAGTC		59	NA	
Drosophila melanogaster	50	CG9795	FBgn0037234	FBtr0078907,FBtr0100617,FBtr0078906,FBtr0078905	2	4	4	85	3R	150514	150598	GAGATATAGACGATCTAAAGACCC		59	150642	150660	GGATTCCAGATGTGAGAGG		59	NA	
Drosophila melanogaster	50	Nedd4	FBgn0036736	FBtr0075176,FBtr0075177,FBtr0075179,FBtr0075178	3	4	4	82	3L	17537426	17537445	TTAGTTCGGTAACGAAGACC		59	17537489	17537571	GCCTCCATAATCTAAGCCAG		59	NA	
Drosophila melanogaster	50	pHCl	FBgn0036542	FBtr0100034,FBtr0100037,FBtr0100035,FBtr0100036	3	4	4	112	3L	15860366	15860384	CCATTACGTACGCAATGAG		58	15857829	15858865	CTCGTAGGAAATGCTCTCC		59	NA	
Drosophila melanogaster	50	CG10089	FBgn0036369	FBtr0075820	3	1	4	109	3L	13460115	13460133	TATATCCTCGTCGAGAGGC		59	13459969	13459987	TCTTTACCAGACTGGTGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	ATPsyn-b	FBgn0019644	FBtr0076405	1	1	2	116	3L	9723626	9723644	GATCTACGTCATGGAGCAC		59	9723724	9723834	TTATCGATCTCGCCATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	dikar	FBgn0052393	FBtr0076954,FBtr0076953	2	2	2	162	3L	6734874	6735016	AGACATTCAATCATGGTGG		57	6734668	6734686	AATTAACTCGGGCACTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Bap170	FBgn0042085	FBtr0086107	2	1	1	127	2R	2525514	2525702	GAGCAACATTCACATCCAG		58	2525793	2525811	TAGAGTCAATACCCTCGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	mir-13aS	FBgn0082180	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG41293	FBgn0085602	FBtr0114046	1	1	1	60	XHet	60636	60657	GATAATCTTGCAGGTGAATTGG		59	60678	60991	GTTGCAGTTGCTTCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR32785	FBgn0052785	FBtr0070603	1	1	1	60	X	3713739	3713758	TGGTGTAATGGTTAGCACTC		59	3713781	3713799	TCCACCGAGATTTGAACTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32819	FBgn0052819	FBtr0070051,FBtr0070050	2	2	2	60	X	21490248	21490266	AACAACTTGAGGAACTCCC		59	21490206	21490224	CCTGCTTCGAGATCTTCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14476	FBgn0027588	FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058	3	5	5	96	X	21473853	21474022	AATCTATGGTCATGGAGCG		59	21473775	21473793	TACAACATTGGTCTCCGAC		59	NA	
Drosophila melanogaster	50	inx6	FBgn0027107	FBtr0077339	2	1	1	60	X	20139923	20139941	ATGCTCACCAGGTATTTCC		59	20139881	20139900	ACTTGATCGAATAGCACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	jog	FBgn0031079	FBtr0074805,FBtr0074804	2	2	2	60	X	19729207	19729225	AACGTGTACACTGGATTGG		59	19729165	19729183	CAAAGGTGTAGTCAGTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18809	FBgn0042132	FBtr0074810	1	1	2	89	X	19637537	19637555	TGATAACGTAACGTAGCCG		59	19636928	19637485	GCAAATCGAAATTGTTTGCG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	vav	FBgn0040068	FBtr0113316	2	1	3	95	X	19159261	19159279	CTACATCTACAGCGAGGAC		58	19159338	19163304	ATATTGTCGGTGGTAACCT		57	NA	
Drosophila melanogaster	50	Frq2	FBgn0083228	FBtr0074547,FBtr0074546,FBtr0074548	1	3	3	87	X	18095255	18095333	CCAGATGGTAGGACAACAG		59	18095383	18095402	GTTCTTGTCCATCTGATCGA		59	NA	
Drosophila melanogaster	50	Andorra	FBgn0030898	FBtr0074591	1	1	1	60	X	18072906	18072924	CTGCTAATCGGCTATTTCC		58	18072864	18072885	TATATTCCACATAGAGCGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wupA	FBgn0004028	FBtr0074522,FBtr0074524,FBtr0074525	1	3	7	80	X	18003547	18003568	CGTATGTATATTTGTGAAGGCC		59	18000950	18003507	ATTGAGATCGTTGATCTCCC		59	NA	
Drosophila melanogaster	50	CG7192	FBgn0030894	FBtr0074527,FBtr0074528	2	2	2	84	X	17992531	17992619	TGAATGATATACCTACACTGCC		59	17992468	17992486	CACAAGATCTGACGTTCCA		59	NA	
Drosophila melanogaster	50	CG8661	FBgn0030837	FBtr0074444	3	1	1	61	X	17178270	17178289	CAAATCCCTAAAGATCGCTC		58	17178228	17178246	CCACCCACTTGATTATGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16700	FBgn0030816	FBtr0074383	2	1	1	81	X	16991185	16991273	AATCTGGGTGATACCATACTG		58	16991316	16991334	AGAACTGCAGAGGATAACC		58	NA	
Drosophila melanogaster	50	CG34326	FBgn0085355	FBtr0112528	3	1	1	64	X	16926402	16926420	ACCCATGTACCATCTACCA		59	16926356	16926374	CTCTGTTTGTTCGGATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wus	FBgn0030805	FBtr0074418	1	1	1	60	X	16833836	16833854	GGTCATTGCCTATCTATGC		57	16833794	16833812	CAAGTACAGATGATGCAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13004	FBgn0030797	FBtr0112996,FBtr0074351	2	2	2	80	X	16721855	16721873	GACAATAGCGTGGAGTCTC		59	16721793	16721811	ATAACCGCAGATGATCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32572	FBgn0052572	FBtr0074324	3	1	1	150	X	16620590	16620667	TATATGCCAAAGTGGCTAGC		59	16620778	16620798	GCAGTAGAGATAAGAATCGCA		59	NA	InUTR
Drosophila melanogaster	50	Axs	FBgn0000152	FBtr0074372,FBtr0100417	1	2	2	80	X	16576145	16576242	CACGATATCCTGTATCTCGA		58	16576084	16576102	AAAGTAGTTCCGGATGTCC		58	NA	
Drosophila melanogaster	50	Pros28.1	FBgn0004066	FBtr0074210	3	1	1	161	X	16170852	16170936	ATAACCAGATTCATTGCCCA		59	16171060	16171078	GGCGTTAGCCTTATACTCG		59	NA	
Drosophila melanogaster	50	Pis	FBgn0030670	FBtr0074058	2	1	2	235	X	15596689	15597228	CCTTTAACCAAAGCACTCG		59	15596379	15596398	CTTCTGGTAATACAATCGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG14414	FBgn0030571	FBtr0073931,FBtr0073930,FBtr0073932	2	3	3	219	X	14475705	14475797	TATGATGAAACGCAGAAGC		58	14475980	14475998	CGCGATCCTTGTTAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11816	FBgn0030495	FBtr0073785	2	1	1	60	X	13447656	13447677	GACACCTATTGAGCAAATATGG		59	13447617	13447635	CATTTGCGGAAATACAACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rbp1-like	FBgn0030479	FBtr0073790	2	1	1	67	X	13278690	13278708	GTGAATGGGATTTAGCCTG		58	13278641	13278659	GATCTCGTATTTGGAGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0100303,FBtr0100302	1	2	10	157	X	11856301	11856319	TTCACCGGAATGTTTAGTG		57	11848301	11856054	TTGATTGAGTTCGAATCCC		57	NA	
Drosophila melanogaster	50	CG11106	FBgn0030280	FBtr0073446	2	1	1	72	X	11096550	11096569	AATTACTTTCAACGGATGGG		58	11096604	11096622	ATTGAGGACAGTAGTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Neb-cGP	FBgn0083167	FBtr0071449	2	1	1	201	X	10354992	10355010	AAATCTTCAATGGCACCAC		58	10355260	10355278	AATAAACTGATCCGCAGTC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Ipod	FBgn0030187	FBtr0071484	3	1	1	86	X	10126135	10126154	CTTACAATGTGATAGCCACG		58	10126068	10126086	ATGAATATCCGTGACCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12121	FBgn0030109	FBtr0071334	2	1	1	80	X	9125701	9125721	GAGGAATCACCTAAATCCCAG		59	9125579	9125662	CTTAACACGAACTTTAAGCTCC		59	NA	
Drosophila melanogaster	50	CG10648	FBgn0030067	FBtr0071255	1	1	1	127	X	8796835	8797246	TGATATTGAGGAGACCAAAGTG		59	8797334	8797352	CATACTCGTACTCCAGCTG		59	NA	
Drosophila melanogaster	50	CG12123	FBgn0030039	FBtr0071245	1	1	1	60	X	8335993	8336012	TTACTATCTTCGCGAGTTCC		59	8335952	8335970	ATGATTGTGCATAAGGCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2147	FBgn0030025	FBtr0071166	2	1	1	68	X	8135142	8135160	GCACAAGATTCAATCTCGC		59	8135192	8135210	ATCCGGATATGGAATCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10959	FBgn0030010	FBtr0071157	2	1	1	60	X	8043028	8043047	CGAATAGATTCCAACTGGTC		58	8043069	8043088	AAGTCCTCGAATCCAAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1409	FBgn0029964	FBtr0071086	3	1	1	82	X	7752455	7752473	ATTCTCGATGTGAGTGACC		59	7752519	7752537	GTGGATTTGTCGTTCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1958	FBgn0029940	FBtr0071046	3	1	1	60	X	7161355	7161376	GGATAATAGGGAAATCAAGGGA		59	7161395	7161415	TAGGGAACTAATTGATGTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12541	FBgn0029930	FBtr0071031,FBtr0110994	2	2	2	170	X	6927338	6927423	CGAGTCTTTCAGAAGAATGG		58	6927187	6927205	CTGTTGTGAATCCATCGTC		58	NA	
Drosophila melanogaster	50	ogre	FBgn0004646	FBtr0071037,FBtr0071036	1	2	2	79	X	6870091	6870109	GCCAAGAAGTACTACACCT		58	6869314	6869332	AATTTGGGCGTATAACAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3184	FBgn0029892	FBtr0070989	2	1	1	61	X	6582487	6582505	GGAGCAGTGAGTGTAATCC		59	6582444	6582462	GTACAATTCCATCTGGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3566	FBgn0029854	FBtr0089869	3	1	2	193	X	6170573	6170591	TACGATGTGACCAAGTTCC		59	6170252	6170270	GATTCTCACCTAATTGGGC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12236	FBgn0029822	FBtr0070825,FBtr0070826	1	2	2	77	X	5803548	5803566	GGATGAGCAGACCATAGTG		59	5803682	5803700	ATGTAATCGGGTATGTCCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3249	FBgn0029764	FBtr0070795,FBtr0070796,FBtr0070794	3	3	3	108	X	5309436	5309454	CAACAAACTTACCAAAGGC		57	5309066	5309367	GATTACATTATTGGGACCTAGG		57	NA	
Drosophila melanogaster	50	CG4041	FBgn0029736	FBtr0070730	1	1	1	101	X	4810516	4810587	AACAATGAAGAGTTGGCCT		59	4810433	4810451	CAGGTACTCCTTGATCACC		59	NA	
Drosophila melanogaster	50	mRpL30	FBgn0029718	FBtr0070682	3	1	1	68	X	4542349	4542367	TGTCGTCAAGAACATACCG		59	4542397	4542417	GGCGTAACCTTAATTAGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12184	FBgn0025387	FBtr0070696	3	1	1	117	X	4522152	4522170	CAGATGATTCGCAATGCTC		59	4521996	4522071	TAACTCGAGTATTGGCTGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG4857	FBgn0026083	FBtr0070643	1	1	1	107	X	4014360	4014378	TTAATGATCTGGACGACGC		59	4014449	4014544	TGAGCATTTGCAGAAATCG		59	NA	
Drosophila melanogaster	50	CG32778	FBgn0052778	FBtr0070622	1	1	1	106	X	3978728	3978832	GATCCCAGTGGTTACTCAC		59	3978901	3978920	TTACTGCATTGATAAGCAGC		58	NA	
Drosophila melanogaster	50	CG32790	FBgn0052790	FBtr0070621	1	1	1	60	X	3972744	3972763	TATAGTGCCTATAATGCGGC		59	3972786	3972804	AGCCATAGTAAGCCAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13021	FBgn0029669	FBtr0070570	1	1	3	87	X	3408477	3409288	TACTGTGGAAACTTGGTGTC		59	3409338	3409356	CAACTTTAGGCAGAAGTGC		59	NA	InUTR
Drosophila melanogaster	50	CG14270	FBgn0029665	FBtr0070590	1	1	1	60	X	3378927	3378945	AAACTGCGTCTCCTTTCTC		59	3378885	3378903	CCTCGTCGTATAGATCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fs(1)Yb	FBgn0000928	FBtr0070484	3	1	1	120	X	2617524	2617611	ATCTTCAAGGATTCACCCAG		59	2617694	2617712	GACGAAAGAAATCCTTGCG		59	NA	
Drosophila melanogaster	50	per	FBgn0003068	FBtr0070477	2	1	1	81	X	2585970	2586053	ACAACAAGAAATACACGGAC		58	2586097	2586115	ATGAAGGACGAGTAGAAGG		58	NA	
Drosophila melanogaster	50	Mct1	FBgn0023549	FBtr0070393	3	1	1	109	X	2092967	2093861	CACATAGTTACCGATGGCA		59	2093934	2093952	ACCATTATGGAGGCAATCC		59	NA	
Drosophila melanogaster	50	Hr4	FBgn0023546	FBtr0100515	3	1	1	170	X	1896185	1896279	AAACAAAGAAGTGGAACTGG		58	1896517	1896536	TAGAACATCTTGCTCTCGAG		58	NA	
Drosophila melanogaster	50	CG11412	FBgn0024362	FBtr0070208,FBtr0070209	2	2	3	228	X	1237463	1237481	GGATATGCACATGAACGTG		58	1237916	1237934	AAGATAGTAGCGGAACAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3638	FBgn0026875	FBtr0070249	1	1	4	195	X	1120308	1127846	TTTACCTCGAGAGTCTGGT		59	1119555	1120149	TACAAGCCTAATCCGATGG		58	NA	
Drosophila melanogaster	50	CG11382	FBgn0040367	FBtr0070205	3	1	1	60	X	1104624	1104642	CAGTCATGGAATCAGTCAC		57	1104665	1104684	GTACTTAAAGGCCAATCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11663	FBgn0029539	FBtr0070164	3	1	1	202	X	788773	788792	GATGCAAACCCAGATAACAC		59	788957	788975	TGTTACTGGTCGTTGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Suv4-20	FBgn0025639	FBtr0070151	3	1	1	106	X	547480	547498	TACGATATAGCCATCCAGC		58	547261	547411	TATCGGACGATATGATCGTG		58	NA	
Drosophila melanogaster	50	ac	FBgn0000022	FBtr0070072	2	1	1	61	X	264646	264666	GAAGACTACCGTAACAATTCC		58	264688	264707	ATATAGTCGAGGATGTCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40625	FBgn0085503	FBtr0113915	2	1	1	72	U	5511350	5511368	AATTCGAGAAGACTGGGAC		58	5511403	5511486	CCTGTAGGTCCATTCTTGTC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG40119	FBgn0058119	FBtr0113799	2	1	1	68	U	4806732	4806753	GTATGACATTCCATACTCAGAC		58	4806782	4806800	CGGTCATCAAATAATCCGT		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41560	FBgn0085691	FBtr0114140	1	1	1	60	U	4060520	4060865	AGAAGAACGAATGGATCGG		59	4060478	4060499	CTTATTTCGTAGGTCATCAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12423	FBgn0040038	FBtr0113685,FBtr0113686	2	2	2	96	U	1911189	1911209	TAAATGGATCGACCGTAATCC		59	1911267	1937080	CATGAAGCACTTTGGAGTC		58	NA	
Drosophila melanogaster	50	CaMKII	FBgn0004624	FBtr0100148	2	1	6	109	4	1059078	1064106	AAAGAGCCTGAAGTTAACCT		58	1058988	1059006	TATCCATCAAAGTCGCCAC		59	NA	
Drosophila melanogaster	50	CG32021	FBgn0052021	FBtr0089244	1	1	1	141	4	928348	928366	TAACTTCTGATGATGTCGC		57	928156	928174	TTTAAGGCCCTACGATCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Pur-alpha	FBgn0022361	FBtr0089994,FBtr0089996	3	2	4	146	4	585281	586046	GATGGAGGGTTTAAAGGAG		57	586240	586259	AATAGTTATCGAAGTCCGGA		57	NA	
Drosophila melanogaster	50	CR33294	FBgn0053294	FBtr0113460	1	1	1	95	3R	21527	21602	AACAGTAATCAAACAGCTGG		58	21660	21678	TATCTGACAGTAATGCGCA		58	NA	
Drosophila melanogaster	50	CG11563	FBgn0039868	FBtr0085831	3	1	1	100	3R	27563231	27563249	AAGAAACCAGTCGTAGAGG		58	27563312	27563389	TTGGGTAATCTGAACTCTGG		59	NA	
Drosophila melanogaster	50	CG1544	FBgn0039827	FBtr0085755,FBtr0113311,FBtr0085756	2	3	3	87	3R	27027534	27027614	GAAGACTTTAACATCCATCCC		58	27027663	27027681	ACCAATCGATCTTGACTCC		59	NA	
Drosophila melanogaster	50	CG1340	FBgn0039797	FBtr0085699	2	1	1	62	3R	26552573	26552591	ACAATCCCTACTACCAGAG		57	26552617	26552635	TAAACTGATGGGATCCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2217	FBgn0027544	FBtr0085630	2	1	1	217	3R	26244956	26244977	CGCCGGATTATATTACTATCAC		58	26244690	26244709	CAACAAATACGCTAAGATGC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Obp99b	FBgn0039685	FBtr0085462	3	1	1	92	3R	25542476	25542494	GTTCTCCTATTGGGTCTGG		59	25542402	25542420	ATAGTTGGTCAGATCCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31427	FBgn0051427	FBtr0113407,FBtr0113406	3	2	2	112	3R	25065062	25065137	GGCAAAGATGATTTCCTTCC		59	25064969	25064987	TTGCGAATACCTTCCTTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	larp	FBgn0040108	FBtr0089682,FBtr0089680,FBtr0089681	2	3	3	119	3R	24146994	24147108	CGATTATGAAACAGGTCAACTG		59	24146896	24146915	TTGAAGCTCTTCAGGTACTC		59	NA	
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085137	3	1	12	102	3R	22892600	22892856	TGTCCTCTTTAATACGTCCG		59	22892517	22892537	CGGAGATTGATTCTGATTCTG		58	NA	
Drosophila melanogaster	50	Ald	FBgn0000064	FBtr0114544,FBtr0085000	1	2	6	91	3R	22082687	22082705	AAGAAGGAGAACATTGCTG		57	22082305	22082325	GATCCAGCTGTATAGTTACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Lnk	FBgn0028717	FBtr0084937,FBtr0084935,FBtr0084936	1	3	3	108	3R	21717660	21717678	TGGCTACGATAATGGTCAG		58	21717750	21718182	CACTTCGTTGCAATGTCTC		59	NA	
Drosophila melanogaster	50	CG5886	FBgn0039379	FBtr0084907	2	1	1	176	3R	21677877	21677895	AGTCCGTAAAGAACGAGAG		58	21678035	21678160	GCAGCTTTAACTTCTTGGT		58	NA	
Drosophila melanogaster	50	CG5071	FBgn0039347	FBtr0084884,FBtr0084885	2	2	2	61	3R	21444565	21444583	AAGACATCAACGTGGAGAG		59	21444608	21444626	CATGGCATGGATGAAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fur1	FBgn0004509	FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986	3	5	6	197	3R	21182169	21182187	GAGACGAGGAGACATTCAG		59	21180028	21181955	GTGATTTGTGCCATATAGCG		59	NA	
Drosophila melanogaster	50	rha	FBgn0027376	FBtr0084832	3	1	1	112	3R	21170194	21170276	TTAGAGTCGAACCCATTGAC		59	21170348	21170369	ATTGAGGGTATATCTTGGAGAC		58	NA	
Drosophila melanogaster	50	Aats-gln	FBgn0027090	FBtr0084866	1	1	1	60	3R	21089955	21089974	AACGCTTTGGGTATCTACTG		59	21089914	21089932	CGTAGTTCATGTTCAGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13653	FBgn0039288	FBtr0084804	1	1	1	60	3R	21021801	21021819	CATTCTATCTGAAGCACGG		57	21021843	21021861	TCAAGATCGGGATAATCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17462	FBgn0039251	FBtr0084718	2	1	1	60	3R	20751887	20751907	CTAATGGTGATCAGCTTTCTG		58	20751929	20751947	TGTGTTCACTTAAACGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13624	FBgn0039209	FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795	2	6	6	125	3R	20386538	20386624	TAAGGTGTACAAGCACAGTG		59	20386432	20386450	GTCATGTCATTGATGGTGC		59	NA	
Drosophila melanogaster	50	CG17781	FBgn0039196	FBtr0113279,FBtr0084623	1	2	2	240	3R	20199970	20199988	AAATGCAAATGGACAGCAG		59	20199683	20199701	TATGTGATGTTTGGGTGGT		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG13614	FBgn0039194	FBtr0084614,FBtr0084615	2	2	2	107	3R	20196249	20196328	GTGTTTACACTACCAACCG		58	20196399	20196417	GTTTAGCTTACACGAGTCG		58	NA	
Drosophila melanogaster	50	CG6364	FBgn0039179	FBtr0084602	3	1	1	84	3R	20116539	20116559	CAAGATACGAGAACTGTTCCA		59	20116605	20116680	GATATCACGTGGCACTCTC		59	NA	
Drosophila melanogaster	50	Atg6	FBgn0010709	FBtr0084590	2	1	1	62	3R	19875163	19875181	AAGATCATCGATCCCTCCA		59	19875065	19875083	CTCCTCCGAGTTAAACTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	TfIIA-S	FBgn0013347	FBtr0084526	2	1	1	103	3R	19716472	19716490	CAACAATGCCCTAAACCAG		59	19716387	19716405	CGTTAAGCATGAGAGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13856	FBgn0038959	FBtr0084224	3	1	1	62	3R	18230569	18230587	ATCTGGATCATCGGAATCC		58	18230610	18230631	TGAAGTAGTAATCCTTGAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr93c	FBgn0045469	FBtr0084159	2	1	1	60	3R	17670053	17670072	TTTGCAGATGTGATACTCCT		58	17670012	17670031	TCATTCGTGAACTACTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	InR	FBgn0013984	FBtr0084121	1	1	1	94	3R	17404349	17404367	AGAATGGGAATGAGAGCTG		59	17404214	17404292	GCTGTCGAACTGATAATAGC		58	NA	
Drosophila melanogaster	50	CG3337	FBgn0038871	FBtr0084107	2	1	1	60	3R	17048711	17048732	GATGATGCAAGATCTAGAACAC		58	17048672	17048691	GATAATCTTGGTGTTGTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5810	FBgn0038866	FBtr0084026	3	1	1	60	3R	16990040	16990058	CACATCTTCTCACAACTGG		58	16990081	16990100	CCACTAGCTGATTACTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0110937,FBtr0112915	3	12	12	137	3R	17037304	17037479	GATGTGATTAATCTCGCCG		58	17037580	17037598	TTCCATGATCGTGTAGAGC		59	NA	
Drosophila melanogaster	50	CG5798	FBgn0038862	FBtr0084016	3	1	1	103	3R	16960767	16960844	TGATAACGCCAGGAATGTC		59	16960910	16960929	CATAAGAACCACCGAATCCT		59	NA	
Drosophila melanogaster	50	CG5793	FBgn0038858	FBtr0084013	2	1	1	88	3R	16953767	16953852	TCAATTACATGGACGTTGTG		58	16953903	16953921	CTGGAGGTACGAAGATGTG		59	NA	
Drosophila melanogaster	50	Rab11	FBgn0015790	FBtr0084010,FBtr0084011	1	2	2	76	3R	16940759	16940777	TTTCATAGAAACCTCGGCC		59	16940817	16940984	TGCGATAGATCTCTGTGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	sec15	FBgn0038856	FBtr0084034	2	1	1	96	3R	16932384	16932402	ATCCTCTGGGAACTATTGC		58	16932242	16932261	GTTCCTTGTCGAGAATTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dhc93AB	FBgn0013812	FBtr0084046	2	1	1	86	3R	16857452	16857530	ACGTATGCAGGATCAATCG		59	16857384	16857402	CTAGAGATTGTTTCCCGCT		59	NA	
Drosophila melanogaster	50	GluRIIE	FBgn0051201	FBtr0110837	3	1	1	109	3R	16472915	16472933	CAATATAACCGGGCTTCGT		59	16472761	16472845	GACAAGAACCATTTCTGAACTC		59	NA	
Drosophila melanogaster	50	CG5060	FBgn0038780	FBtr0113251,FBtr0083871	1	2	2	159	3R	16116160	16116178	AAGAAGTACAACGGGAAGC		59	16116301	16116697	TTGATCGACTGTCACTGAG		59	NA	
Drosophila melanogaster	50	koko	FBgn0051232	FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629	2	5	5	155	3R	14229544	14229623	TACGATGAGTTCCTCATTGC		59	14229741	14229759	CATCGACCAGTACTCATCG		59	NA	
Drosophila melanogaster	50	PKD	FBgn0038603	FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592	2	4	4	196	3R	14131625	14132352	AGCAGCTCACTGAATATCC		59	14131447	14131465	GTATTGTACTGGCAGTCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	PP2AB	FBgn0042693	FBtr0083553,FBtr0083552	2	2	5	81	3R	13995748	13995766	TGTAGAAGGAGTAGCTCCA		58	13995811	13997259	TTTGTTAGCCAAACTGCTC		58	NA	
Drosophila melanogaster	50	PP2AB	FBgn0042693	FBtr0083556,FBtr0083555	3	2	5	262	3R	14000710	14000728	ATCTATTCTACACGCCACC		58	14001241	14001333	GACAGCAAACATATTGATCG		57	NA	DesignRelaxed
Drosophila melanogaster	50	AttD	FBgn0038530	FBtr0083470	2	1	1	60	3R	13451400	13451418	CATTTCACAGTCATAGCCG		58	13451441	13451460	CCAGTTTGCAAATTGAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14331	FBgn0038510	FBtr0113243,FBtr0113244	3	2	2	140	3R	13265130	13265559	ATATTGACAACGTGAGACTG		57	13264947	13265027	CCAACACAATTATGTCGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Fer2	FBgn0038402	FBtr0083280	2	1	1	100	3R	11975765	11975784	GGTACTACAAACCGACTACG		59	11975629	11975704	CTGTGAGATCACTCGTATTCC		59	NA	
Drosophila melanogaster	50	glob1	FBgn0027657	FBtr0083247,FBtr0083246,FBtr0083248,FBtr0083245	3	4	4	111	3R	11723133	11723277	CTTACAACCAACTGAAAGGAG		58	11723042	11723060	ATGATTCCGTAGACATGGT		58	NA	
Drosophila melanogaster	50	CG31183	FBgn0051183	FBtr0083187	1	1	1	93	3R	11685890	11687500	GCCACAAGAAATAATCGAACTC		59	11685818	11685836	CTTGGTATCACCGTTTGGT		59	NA	
Drosophila melanogaster	50	CG6974	FBgn0038285	FBtr0083042	2	1	1	60	3R	10904625	10904644	TATCAACCTCTGTCCTTTGG		59	10904584	10904602	GCATAGTGAGGCATTTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3817	FBgn0038275	FBtr0083003	1	1	1	60	3R	10724734	10724753	ATTTCGAGATCGAGAAAGCA		59	10724776	10724794	TCGTCTTCATGGTTATCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3508	FBgn0038251	FBtr0082968,FBtr0082967	2	2	2	69	3R	10485972	10485990	TTTGGAGCCAAATTACGAG		58	10486023	10486105	TGCGCAGAAATTGATTCTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG8489	FBgn0038225	FBtr0082940	1	1	1	60	3R	10207150	10207168	TGACTTGGACACATTGGAG		59	10207108	10207126	CATCTGACGATTGACTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9631	FBgn0027563	FBtr0082898	3	1	1	183	3R	10051835	10051997	AAATGAGGAGTATGATGCCC		59	10051671	10051689	GTCCGAATCTATTCTGGGC		59	NA	
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082805	2	1	8	86	3R	9488126	9488710	AATCATCCTCTCGTTATGGC		59	9488759	9491190	TGTAATCCTTGAGATCGCG		59	NA	
Drosophila melanogaster	50	yrt	FBgn0004049	FBtr0082793,FBtr0114376,FBtr0114375	1	3	4	80	3R	9257183	9257201	ATTGTCAAAGATCCATCCC		57	9257060	9257139	CTTGTTGATAGTCACCCTG		57	NA	
Drosophila melanogaster	50	CG9813	FBgn0038143	FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767	1	6	6	80	3R	9204503	9204740	TTGCCCTACATCTACAATCC		59	9204442	9204461	GTCCAGTTCACTTACATCGT		59	NA	
Drosophila melanogaster	50	Lip3	FBgn0023495	FBtr0082771	3	1	1	124	3R	9196606	9196624	AAGTTCAAGCAGGATTTGG		58	9196423	9196518	TCAAGGAGTTCGTAGTCCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6753	FBgn0038070	FBtr0082669	3	1	1	161	3R	8467361	8467379	GAAGGACGGATATGTGCTC		59	8466961	8466979	CAAAGGAGGTAGGCTAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Octbeta3R	FBgn0053959	FBtr0099996	3	1	5	141	3R	8344783	8344895	ATCTTTAAGGAGGCGATTCG		59	8344661	8344679	TGGCATTCAGATCACAGTC		59	NA	
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	2	15	15	121	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811941	7812031	TTCTTCAGGATGTTGGAGG		58	NA	
Drosophila melanogaster	50	HisCl1	FBgn0037950	FBtr0082471,FBtr0082470	3	2	3	81	3R	7614046	7614178	CGAGAGTTTATCCCATACG		57	7614223	7614241	CTCAATCTCCGTGTTAACC		57	NA	
Drosophila melanogaster	50	CG6782	FBgn0037912	FBtr0100465	3	1	4	220	3R	7388840	7388858	AATGCTCTGATAACCTGGA		57	7386744	7386762	ATAGGTGATGCAGATCTCG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG5276	FBgn0037900	FBtr0082390	2	1	1	60	3R	7257829	7257847	CTATCACTTCGCCCTTCTG		59	7257870	7257889	CGCAAAGTAGAAGAGTAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4674	FBgn0037856	FBtr0082325	3	1	1	97	3R	6720764	6720782	CTATAGCCAACTGCCATCC		59	6720900	6720918	AGAGCTCTTCGTATGAAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14691	FBgn0037829	FBtr0082314	1	1	2	81	3R	6579576	6579770	TCGAATCACATACTGAAGGTG		59	6579515	6579533	TTACCAGCGAAGTCTTCAC		59	NA	
Drosophila melanogaster	50	Takr86C	FBgn0004841	FBtr0082315,FBtr0112789	2	2	2	85	3R	6565219	6566918	ACCAAGCACTATTACAATGG		57	6565153	6565171	TAATCCGCCATAGAAGTGG		58	NA	
Drosophila melanogaster	50	CG34304	FBgn0085333	FBtr0112500	2	1	1	215	3R	6484461	6484482	GACAGGGAACAAATGTTAATCG		59	6484842	6484860	TTGGGTGACATACACATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31407	FBgn0051407	FBtr0082214	2	1	1	62	3R	5848898	5848916	ACTGGGACGGGATATAGAC		59	5848854	5848873	GAACCCTCGCAACTATATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082208	1	1	8	82	3R	5841636	5844226	CCAATATTAGTTCCAAGGTGG		58	5841574	5841592	GTAGACGGTTTGCTTACAG		58	NA	
Drosophila melanogaster	50	CG8526	FBgn0037759	FBtr0082142	3	1	1	88	3R	5627496	5627514	TTTGATTGAGTTCTGCCCA		59	5627565	5627645	TGTATGTCTTTCCCACTTCG		59	NA	
Drosophila melanogaster	50	CG8145	FBgn0037617	FBtr0081911	3	1	1	82	3R	4550088	4550177	GTTGTAAGGAAGTATAGTTGCG		59	4550220	4550238	GTATTGGAGATGAAGTGCG		58	NA	
Drosophila melanogaster	50	CG7963	FBgn0037584	FBtr0081847	2	1	1	61	3R	4188879	4188899	ACTATATTGAACAGCTCTCCG		59	4188922	4188940	GCGTGAAACTCCAATAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18749	FBgn0042182	FBtr0100545	1	1	1	80	3R	4072981	4073000	TTCGCTGATTAATTACGGCT		59	4073043	4073118	TTAAGCCTGGTCGTATTCG		59	NA	Nonspecific
Drosophila melanogaster	50	DNApol-iota	FBgn0037554	FBtr0081798,FBtr0081797	3	2	2	224	3R	4060872	4060890	CTGTAAGCCAATATCCGTG		57	4061142	4061160	CTCACACCAGTTTCTCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2747	FBgn0037541	FBtr0081818,FBtr0081817	3	2	2	128	3R	3844030	3844049	TAATCGAATCGTTGTATGCG		58	3842719	3843939	TCTGAATATGGTTCTGCGG		59	NA	
Drosophila melanogaster	50	CG15186	FBgn0037448	FBtr0081674,FBtr0081673,FBtr0081672	3	3	3	97	3R	2319012	2319030	GTTAACCAGATCCCTGGAC		59	2319090	2319281	TCAACTCGTCCATATTTGCA		59	NA	
Drosophila melanogaster	50	Osi18	FBgn0037428	FBtr0078611	2	1	1	74	3R	2156893	2156911	CTCATTGCCCTAAAGACCT		58	2156949	2156967	AATAACCAAGGCTCCAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15580	FBgn0037398	FBtr0078622,FBtr0078621	3	2	2	93	3R	1881011	1881137	ATACCCGAATCCTATACGC		58	1880936	1880954	ATGTAGTTATTCCGACGCA		58	NA	
Drosophila melanogaster	50	Rm62	FBgn0003261	FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653	1	6	6	154	3R	1829622	1829746	GAGGAGAAATTGAAGACCCT		59	1829487	1829505	TTGTCACCGTGAATAGCTC		59	NA	
Drosophila melanogaster	50	CG1213	FBgn0037387	FBtr0078643,FBtr0078642,FBtr0078644	3	3	3	65	3R	1671125	1671143	GATGCAGCTCTTCATTGTG		59	1671243	1671262	TGGTATGAAACATACGGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	exba	FBgn0037346	FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745	1	7	7	82	3R	1423978	1423999	GGTTCTATTATTCGTAAAGGGC		58	1423651	1423935	AACCGTTGACTAACCAGAG		59	NA	
Drosophila melanogaster	50	eIF3-S10	FBgn0037249	FBtr0078944	2	1	2	98	3R	258185	258253	CTTATTCGTGAAGTGGTGC		58	258105	258124	ATTCAGTGGGTTGAAATCCA		59	NA	
Drosophila melanogaster	50	pncr011:3L	FBgn0083068	FBtr0091958	1	1	1	62	3L	11089808	11089826	TGCTAATTAGCGGAAGACG		59	11089852	11089870	ATGGAAGTTGGATTGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AGO3	FBgn0086780	FBtr0111170,FBtr0111171,FBtr0111172	1	3	3	116	3L	23560303	23561655	ACGGATCTAAAGGTTCATCTG		59	23561733	23561751	GAACAGAGTCAATGGGAGG		59	NA	
Drosophila melanogaster	50	CkIIalpha	FBgn0000258	FBtr0070042,FBtr0070043	3	2	3	269	3L	23093381	23093399	GGATATCATACGAGACGGA		57	23095396	23095414	ATATTCATCCGGTTTGTGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CkIIalpha	FBgn0000258	FBtr0070042,FBtr0070043	1	2	3	239	3L	23093411	23093429	AAATACTTTGGCAAGCCAG		58	23095396	23095414	ATATTCATCCGGTTTGTGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13239	FBgn0037197	FBtr0078548	3	1	1	126	3L	22854212	22854230	CCACCATCGCATACTATCC		59	22854318	22854338	AAATAGGCTTGGTAGTACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14565	FBgn0037129	FBtr0078452	2	1	1	87	3L	21737098	21737116	TTTACATGAGGATAGCGCC		59	21737029	21737047	CTCAATTTCATGGAGTCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14567	FBgn0037126	FBtr0078454	1	1	1	60	3L	21731260	21731279	CATAGCTACGAGATTTGGAG		57	21731219	21731238	CGGTAGATTGACTAGAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32442	FBgn0052442	FBtr0089797	1	1	2	141	3L	21522165	21522183	CAACTGTCACCAAATCACG		59	21521993	21522060	AAACCTTCCAGTAGAGCTC		58	NA	
Drosophila melanogaster	50	CG33285	FBgn0053285	FBtr0078325	2	1	1	60	3L	21081616	21081634	TGGAAGAACGACATAGTGG		58	21081574	21081593	CATAGGCTAGATCTCACTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	siz	FBgn0026179	FBtr0111038,FBtr0078289,FBtr0078290	2	3	3	118	3L	21066242	21066321	CATCCGATACGATCTTCGT		59	21066401	21066421	GCGCAGATTCTTGATAAAGTC		59	NA	
Drosophila melanogaster	50	CG4365	FBgn0037024	FBtr0078254,FBtr0078253,FBtr0078252	1	3	3	64	3L	20792311	20792329	ATGGAGATCAAGATCCTGC		58	20792356	20792375	GTCTTCGTGTCTACAATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32228	FBgn0052228	FBtr0074836	1	1	1	60	3L	20261559	20261580	ACTTTACACTCTGGAAAGTAGG		59	20261598	20261619	GAAACTAGACATACTACTCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Deaf1	FBgn0013799	FBtr0100666,FBtr0074882	3	2	2	212	3L	19812916	19812935	TGAAGTACAAGGACAAGTGG		59	19821425	19821443	GTGTAAAGAGACGGACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15881	FBgn0036909	FBtr0074879,FBtr0074880	1	2	2	72	3L	19799700	19799718	ACGGATAACCAGTTTAGGG		58	19799807	19799825	TGATGTCCTCGACATTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	wnd	FBgn0036896	FBtr0074963,FBtr0074965,FBtr0074964	2	3	3	110	3L	19620619	19620638	GTGTACGAGGATAAGTTGCA		59	19620469	19620547	TAGTTTCCGTTCTCGTTCTG		59	NA	
Drosophila melanogaster	50	fal	FBgn0028380	FBtr0074995	3	1	1	153	3L	19290536	19290625	CCATGAATTTGATCACGAGG		58	19290741	19290759	CAGATTCTCACTGGATCCC		59	NA	
Drosophila melanogaster	50	CG14085	FBgn0036859	FBtr0074992	2	1	1	80	3L	19266240	19266320	TATGAGCAGGCTAAAGATCTG		59	19266362	19266380	GTCATCCTCGTCAATGGAG		59	NA	
Drosophila melanogaster	50	CG4306	FBgn0036787	FBtr0075117	1	1	1	60	3L	18455434	18455452	TTAAAGGCGCTATTGAGAG		57	18455392	18455410	TTAATGCTCCTCAATCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32176	FBgn0052176	FBtr0075218	3	1	1	134	3L	17427310	17427328	GAGGAACTTTGTCTGGAGG		59	17427424	17427504	CGAGATGTGTTCTTCTTTGTG		59	NA	
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0075438,FBtr0112850,FBtr0075439	1	3	6	83	3L	16070897	16073864	AGAAGAGCTCAAGCAACTC		59	16073908	16073929	CTAATTACTCTAATCAACGCGG		59	NA	
Drosophila melanogaster	50	brm	FBgn0000212	FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523	2	4	4	160	3L	15964327	15964406	GATACCATTCTAGGTCGAGG		58	15964186	15964204	CGATTCTTACGCTTTCGTC		58	NA	
Drosophila melanogaster	50	CG7656	FBgn0036516	FBtr0075594,FBtr0075592,FBtr0075593	2	3	3	63	3L	15580354	15580372	CGACTATCCATACTCACCG		59	15580309	15580327	GTAAACATTCGGATGCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13457	FBgn0036482	FBtr0075654,FBtr0075653	2	2	2	77	3L	15121464	15121482	ATTATACGGGACCTAGCTC		57	15121300	15121318	CATCATCGTAGGTGGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	cp309	FBgn0086690	FBtr0099992	3	1	2	85	3L	15074253	15074442	TGACTATAAGCCTGCAACC		59	15074186	15074205	TAATAAGGGAGGTATTCGCG		59	NA	
Drosophila melanogaster	50	CG13461	FBgn0036468	FBtr0075664	3	1	1	60	3L	15045342	15045363	AAATAGCGAGGATAATCAGGAG		59	15045303	15045321	ATCTTCCTCATCATCTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HGTX	FBgn0040318	FBtr0114619,FBtr0075720	1	2	2	93	3L	14577188	14583109	CAGGTTAAGGTCTGGTTCC		59	14577113	14577131	CCATATCGTCCTGTTTCCT		58	NA	
Drosophila melanogaster	50	CG9598	FBgn0036424	FBtr0075727	1	1	1	80	3L	14407794	14407882	GGCTAAGGAAATTACGATCCA		59	14407734	14407755	ATTCGATCACCCTTCTTTAGAC		59	NA	
Drosophila melanogaster	50	CG32137	FBgn0052137	FBtr0075758,FBtr0075757	1	2	2	125	3L	13934568	13952640	AAATTGAGAAACTCGAGCAG		58	13952728	13952746	TCTGCAGCTTATCCTTCAG		59	NA	
Drosophila melanogaster	50	stv	FBgn0086708	FBtr0075806,FBtr0075809,FBtr0075807	2	3	5	84	3L	13474163	13474181	GACATGGACAACATGTTCC		58	13474229	13474325	GGAAACCAAAGTGTGAGTC		58	NA	
Drosophila melanogaster	50	CG10732	FBgn0036365	FBtr0075851,FBtr0075852	1	2	2	200	3L	13437396	13437476	ATTAAGCGAGATGAGCGAC		59	13437640	13437658	TCGTTAAGGTGAGTCTTGG		58	NA	
Drosophila melanogaster	50	CG10984	FBgn0036305	FBtr0075920,FBtr0075919,FBtr0075921	2	3	3	171	3L	12746015	12746095	AAATTAAGGAGTCCATGGTG		57	12746229	12746247	AATGTGTCAAAGTCGTCAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10632	FBgn0036302	FBtr0114612,FBtr0114609	2	2	4	163	3L	12533237	12533498	ATGTCTACAAGGCCAATCG		59	12531551	12531569	CAGAGAACCAATCCGTAGG		59	NA	
Drosophila melanogaster	50	CG6931	FBgn0036236	FBtr0076048	2	1	1	88	3L	11984177	11984255	ATATGCTCCCAACGATATTAGG		59	11984304	11984322	TGGTTTCTATGTTCTCCCG		58	NA	
Drosophila melanogaster	50	CG11588	FBgn0036221	FBtr0076038	3	1	1	60	3L	11914787	11914808	AGTCAATATCGATGTATGTCCC		59	11914829	11914847	GGCCATCAAATAGCTAGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33269	FBgn0053269	FBtr0076148	2	1	1	60	3L	11575197	11575215	TGAAATACCTGTTCGTGGT		58	11575155	11575174	CTAGAAGATGAAGCCACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32081	FBgn0052081	FBtr0076198	3	1	1	81	3L	11020802	11020880	CTCACCCGATATCTGATATTGG		59	11020919	11020940	GATAATGGAATGGCCATAACTC		58	NA	
Drosophila melanogaster	50	Ard1	FBgn0036064	FBtr0076349,FBtr0076352,FBtr0076351,FBtr0076350,FBtr0076348	3	5	5	67	3L	9966736	9966754	CTGAACCTCTACACCAACG		59	9966785	9966803	CCATCGGCATAGTACTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385	1	8	8	111	3L	9825956	9826035	GAGTTAACCGGGACTACAC		59	9826110	9826128	CTTTCCCAAACTTAGCCGA		59	NA	InUTR
Drosophila melanogaster	50	CG6749	FBgn0036040	FBtr0076410	1	1	1	80	3L	9725537	9726053	CAATCAACTGATACAGTTGGAC		59	9725478	9725497	AATCTATTCCCGCTTAGCTG		59	NA	
Drosophila melanogaster	50	CG3280	FBgn0036017	FBtr0076381	2	1	1	80	3L	9600542	9600563	GATACTGGTCAATATACTGGTG		57	9600604	9600768	TCCTCAGAGTGATTAACCA		57	NA	
Drosophila melanogaster	50	Uch-L3	FBgn0011327	FBtr0076472	2	1	1	60	3L	9469296	9469315	ATCTTGGTGAGATCAAGTCG		59	9469255	9469273	TTCTCAATAATCGGACGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32043	FBgn0052043	FBtr0114368,FBtr0076465,FBtr0114367,FBtr0076466	2	4	4	107	3L	9463440	9463458	AAATTCGCTCGATATCTGG		57	9463529	9463669	CTTCGTGTAGATTTCCGTG		58	NA	
Drosophila melanogaster	50	CG4641	FBgn0035967	FBtr0076533	2	1	1	60	3L	9136958	9136977	CCAAAGAAGGTAATGCTGGA		59	9137000	9137018	GATGGATACTCGGTCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL14	FBgn0017579	FBtr0076633	1	1	1	106	3L	8594424	8594442	GATTCGTACAAACTGGTCG		58	8594512	8594762	ACCATCTACCAGAACTCTG		57	NA	Nonspecific
Drosophila melanogaster	50	Gug	FBgn0010825	FBtr0076619,FBtr0076618	2	2	4	81	3L	8463408	8463429	CCAAATATGCTTATACCTAGGG		57	8463468	8463540	CCTGTAAATACTGTAGTTGGTC		58	NA	
Drosophila melanogaster	50	exo70	FBgn0035892	FBtr0076612	3	1	1	89	3L	8407367	8407449	CTCGTCTTCAGCAAATATTCG		59	8407500	8407518	TAATGGAGAACCCTGTGGA		59	NA	
Drosophila melanogaster	50	Jon66Cii	FBgn0035887	FBtr0076666	1	1	1	73	3L	8386466	8386484	TAACTGTCTACTTCGGAGC		58	8386411	8386429	GATAAAGTTACCGTTGCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ect4	FBgn0085402	FBtr0112598,FBtr0112601	1	2	5	87	3L	8086361	8086379	GGCAAATCAATACCAGCTC		58	8086430	8091456	CTGTTGACAACCTGTTGTG		59	NA	
Drosophila melanogaster	50	Clk	FBgn0023076	FBtr0100132,FBtr0100134,FBtr0076785	3	3	3	90	3L	7760034	7760052	CTACACTCATTTGAGACGC		58	7759909	7759981	GGTATCGTTACGAAAGTAGC		58	NA	
Drosophila melanogaster	50	lqf	FBgn0028582	FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794	1	6	6	80	3L	7527254	7527341	GCAGGATTTCAAGGATCCA		59	7527383	7527403	AGCAGATCTAGCAAATGACTC		59	NA	
Drosophila melanogaster	50	CG18769	FBgn0042185	FBtr0076973,FBtr0076970,FBtr0076972,FBtr0076971	1	4	6	163	3L	6544995	6545013	CACCACCCATAGAAGTCTC		59	6555512	6583715	CATAGATGTCTTCTCCCGT		58	NA	
Drosophila melanogaster	50	CG13299	FBgn0035694	FBtr0077013	2	1	1	60	3L	6225377	6225396	TCTTCCTTATCGGATGTCTC		58	6225273	6225292	CTGAATCTATCGAATGGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10483	FBgn0035649	FBtr0077077	2	1	1	86	3L	5911699	5911869	GTTTATTCATCGACGTGGT		57	5911631	5911650	AATTAGACTCATGGACAGGG		58	NA	
Drosophila melanogaster	50	CG10576	FBgn0035630	FBtr0077121,FBtr0077122	2	2	2	211	3L	5757777	5757795	CTGACTACACGTTAAAGGC		58	5756865	5757540	GAGGGAGTAGTTATTGGCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Ubp64E	FBgn0016756	FBtr0077096,FBtr0077095,FBtr0077097	3	3	3	99	3L	5751686	5751765	GTGACTAGTATCACCCAAGAG		59	5751826	5751844	ACATGTATGCATTGGTGCT		59	NA	
Drosophila melanogaster	50	CG34391	FBgn0085420	FBtr0112634	2	1	1	80	3L	5426261	5426279	GCTACTATATGTGCCAGGT		58	5426323	5426405	AAATATTTGGTGGCACGAC		58	NA	
Drosophila melanogaster	50	Gen	FBgn0027914	FBtr0077176	2	1	1	86	3L	5144213	5144287	TCTCTGGAAAGAACAACGAC		59	5144146	5144164	TCTTCGTTGGGAAAGTCAG		59	NA	
Drosophila melanogaster	50	CG33764	FBgn0053764	FBtr0091765	3	1	1	171	3L	4267160	4267243	TAGCAAAGTAAAGGTGCGT		59	4267007	4267028	GCAAGAGTGGTTAATATTGGAG		59	NA	
Drosophila melanogaster	50	ImpL2	FBgn0001257	FBtr0073248,FBtr0073249,FBtr0073250	1	3	3	98	3L	4224998	4225016	ATCAAGTGGGAGGATATGG		58	4224843	4224936	TTCCTCATTAAGTACGGGA		57	NA	
Drosophila melanogaster	50	CG12766	FBgn0035476	FBtr0073172	1	1	1	80	3L	3938887	3938968	CCGATATGTGATTGAGCTG		58	3938825	3938844	AAGACATTGAAGTTCTCCTC		57	NA	
Drosophila melanogaster	50	Ubi-p63E	FBgn0003943	FBtr0073179,FBtr0073177,FBtr0073178	2	3	3	90	3L	3901649	3901667	AGACAAGGAAGGAATTCCC		58	3901577	3901595	AATGTTGTAATCGGACAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	enc	FBgn0004875	FBtr0073153,FBtr0073152,FBtr0112844	1	3	4	83	3L	3833663	3836032	AGCAGTGGTTCCATTTACC		59	3836079	3836097	TGACTGGTATTGATTGCCC		59	NA	Nonspecific
Drosophila melanogaster	50	CG33160	FBgn0053160	FBtr0073102	1	1	1	60	3L	3206008	3206026	GCAAGACCCTCAATATGGA		59	3205966	3205984	TTGGCTCCAATCATATCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32846	FBgn0052846	FBtr0073009	1	1	1	61	3L	2951001	2951019	CTTAGGCAGGATCAACCAG		59	2950958	2950976	TCTGTTCAGTCTCATCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12182	FBgn0028504	FBtr0072955	2	1	1	98	3L	2597134	2597203	CTTTGTGGAGATCTCCCTC		59	2597054	2597072	GACTCGTAGAGTTCTTGCA		59	NA	
Drosophila melanogaster	50	CG34259	FBgn0085288	FBtr0112453	3	1	1	60	3L	2027054	2027072	TACCAGAAGAAAGTGTGCC		59	2027095	2027114	GGGTGTCCTCATTGTATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12361	FBgn0035292	FBtr0072839	2	1	1	129	3L	1924963	1925258	ATCCCTACATGAGTGTTGG		58	1925350	1925428	CTCTGGGAATCTGAGAAGAC		59	NA	
Drosophila melanogaster	50	RpL23A	FBgn0026372	FBtr0072805	2	1	1	136	3L	1667571	1667589	CATCAAGTACCCACTGACC		59	1667453	1667471	CCACCTTGATGTCGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33791	FBgn0035240	FBtr0091792,FBtr0091794,FBtr0091795,FBtr0091793	3	4	4	125	3L	1606787	1606805	AAGTTGATCAAGGAGGGAG		58	1606891	1606971	CCAAGAGGAATACTTTATGGTC		58	NA	Nonspecific
Drosophila melanogaster	50	CG2277	FBgn0035204	FBtr0072729	1	1	1	60	3L	1306445	1306464	CCTGATGAACATCTACAGTC		57	1306404	1306424	GCTCTTGAAATAGAGACTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Klp61F	FBgn0004378	FBtr0072733	2	1	1	89	3L	1244992	1245203	CTGGGAAGATGACTCTGAC		59	1244921	1244939	ATAGTGTACTCCACCTCCA		58	NA	
Drosophila melanogaster	50	CG32479	FBgn0052479	FBtr0072589	2	1	1	119	3L	890795	890874	ATGCTGGAGGTGATTAAGC		59	891014	891033	GCCCTTATTACGATTGTTGC		59	NA	
Drosophila melanogaster	50	CG3371	FBgn0035153	FBtr0072610	2	1	1	65	3L	683157	683175	ACCTAAAGCTACTCGAGGA		59	683110	683128	GTGTGATCAGCTCAATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17090	FBgn0035142	FBtr0072552,FBtr0072551	1	2	2	104	3L	569806	569887	CGGAATATGAGGTCCTTGAG		59	569954	569972	TCTTCAGGATCTTGATGGC		59	NA	
Drosophila melanogaster	50	CG34454	FBgn0085483	FBtr0112760	3	1	1	60	3L	232110	232130	GAATACCAGGAGGTCTTACAC		59	232070	232089	TTCAGAAATTCCTTGGTTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-841d	FBgn0083016	FBtr0113524	1	1	1	60	2R	17218438	17218456	ACTAGCTTCGTGTGATGAC		59	17218480	17218498	ATGGATAAGACGCATCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR33655	FBgn0053655	FBtr0091634	3	1	1	79	2R	17207402	17207420	TACGATCTAACATGCGAGG		58	17207280	17207299	GCTTTCGATTTACCATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tamo	FBgn0041582	FBtr0072281,FBtr0072282	1	2	2	150	2R	20017461	20017544	CTCTCAAGACCTATTCGGG		58	20017329	20017347	ACATTCGTAACCTGATCCG		59	NA	
Drosophila melanogaster	50	CG30172	FBgn0050172	FBtr0072193	3	1	1	78	2R	19918532	19918550	CAGATTATGTGCATCCTGG		57	19918346	19918364	TTATAACTTCTGGCAGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3735	FBgn0034933	FBtr0072210	2	1	1	158	2R	19826122	19826195	TGGCAGTCAAGATGATCAG		59	19825982	19826001	AGTTTGAAGTTGTCATCCGT		59	NA	
Drosophila melanogaster	50	Upf3	FBgn0034923	FBtr0072221	1	1	2	135	2R	19780929	19781005	GGAATAAAGATCGACCATCGA		59	19780814	19780832	TTCGAAGTCTTCTCCTCCA		59	NA	
Drosophila melanogaster	50	CG5539	FBgn0034907	FBtr0072123	2	1	1	60	2R	19692535	19692553	ATAAGACTCTGAACAGCGG		59	19692574	19692595	TAAACTATCCAGTATTTGGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6018	FBgn0034736	FBtr0071835	2	1	1	60	2R	18439104	18439123	ACGTATCTCTATCGATTCGA		57	18439146	18439164	ACTTCAAGATGCGATAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	qkr58E-1	FBgn0022986	FBtr0071843	3	1	1	94	2R	18301783	18301926	GTAAAGACGCACAGATCAC		58	18301707	18301725	GAGTGCTTTGATGTTTGGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Rtf1	FBgn0034722	FBtr0071820	3	1	1	174	2R	18264934	18264952	CGAAGATGACATGCAACTG		59	18265089	18265165	ATTCGTATTGACTGGTAGCG		59	NA	
Drosophila melanogaster	50	CG3290	FBgn0034711	FBtr0071782	1	1	1	120	2R	18094151	18094238	TTGTGTTCATAGAGGGTGG		58	18094049	18094067	ATGTTGGTCATTTCACGAG		58	NA	
Drosophila melanogaster	50	GM130	FBgn0034697	FBtr0071789,FBtr0071790	1	2	2	130	2R	18013744	18013762	TAAAGAGGCCAGTCAAGTG		59	18013577	18013595	TCTTCAGCTGGAATTCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15678	FBgn0034647	FBtr0071682	2	1	1	66	2R	17549141	17549159	AGTAATCGGCAATAGCACC		59	17549093	17549111	GTTACCCGTGTACTTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10494	FBgn0034634	FBtr0071699,FBtr0071700	2	2	2	89	2R	17405524	17405545	GCGATAGTGATTTCAATGACAG		59	17405397	17405416	AATCAACCTCTTCGTCTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	IM14	FBgn0067905	FBtr0100038	1	1	1	109	2R	16757933	16757951	AACTGTCTGAAGATCTGCG		59	16758087	16758106	TCAGTTTGAATCAACGTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)05510	FBgn0028622	FBtr0086258	2	1	1	74	2R	16451346	16451364	ACAAGGTCTACGAGATCTC		57	16451217	16451308	GGACCTCATTCTTGTTGAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Obp56g	FBgn0034474	FBtr0086343,FBtr0086342	1	2	2	82	2R	15671237	15671255	AGTGCATTCTGGTCAAGAG		59	15671173	15671191	CGAGTTCGCATAGTAAGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10474	FBgn0034427	FBtr0086561	3	1	1	69	2R	15173163	15173182	TATATGGTCAGTAGTCCGGG		59	15173113	15173132	ATTTCTCAGGATTCGCTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cora	FBgn0010434	FBtr0086507,FBtr0086509	2	2	4	184	2R	15124299	15124318	GTTCAATAGGACTCTGTCCG		59	15124562	15125669	CCTTATCAGCATCCTTCTCC		59	NA	
Drosophila melanogaster	50	CG10737	FBgn0034420	FBtr0086588,FBtr0086585	1	2	5	81	2R	15062799	15063696	AAAGCAATTCACTTGGACC		58	15063739	15063759	GAGGATTCTGAAATTGAGGAG		58	NA	
Drosophila melanogaster	50	CG30116	FBgn0028496	FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718	2	4	4	80	2R	14363162	14363624	GATTATCGCCTTATGAACGTG		59	14363102	14363120	CGATTGAAAGGCTTGTTCC		59	NA	
Drosophila melanogaster	50	CG15065	FBgn0040734	FBtr0086667	1	1	1	60	2R	14277508	14277526	CTTGGTCTTTCTATGCGGT		59	14277615	14277634	ATTACCCGGATTTAACGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14490	FBgn0034281	FBtr0086801	1	1	1	95	2R	13748343	13748361	TCTCAACGTTATCCTGGTG		58	13748420	13748438	GTAGACAAGTCCACTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Klp54D	FBgn0004377	FBtr0086826	1	1	1	80	2R	13450721	13450739	TACCAAGGAGTTGAACCTG		58	13450782	13451246	GGGATGCTAATACTGTCTGG		59	NA	
Drosophila melanogaster	50	CG11419	FBgn0034231	FBtr0086951	3	1	1	72	2R	13405277	13405298	CATATACACGGATTACAAGCTG		59	13405226	13405244	GAAGTTCGTTCCAGATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30103	FBgn0050103	FBtr0086929	3	1	1	80	2R	13381926	13381944	ATAAGACCGGATACCAAGG		58	13381988	13382065	TGTTTCCTTATTGATGGCG		58	NA	
Drosophila melanogaster	50	Nup62	FBgn0034118	FBtr0087150	2	1	1	60	2R	12233113	12233132	CCACTGATCCCATCATACAG		59	12233153	12233173	CACTGCAACGAATTCATATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hmgs	FBgn0010611	FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146	3	5	5	60	2R	12227690	12227708	CAGAAGGATACTTCCAAGC		57	12227731	12227750	TGTGGAATAGGATAGCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33465	FBgn0053465	FBtr0100534	3	1	1	91	2R	11707212	11707230	ATACCCATCCCAGATTCAC		58	11707084	11707159	CTTGACAAGATCTGAGTTTGG		58	NA	
Drosophila melanogaster	50	CG12857	FBgn0033963	FBtr0087469	3	1	1	67	2R	10646180	10646198	TGTGAACACCGAGATTGAG		59	10646076	10646094	TCCTCTTGTTCCAATCGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sin1	FBgn0033935	FBtr0087487	1	1	1	60	2R	10300204	10300223	TTACAATATCCCGACGTTCC		59	10300244	10300264	CCTCTGTCATATACAAAGCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shot	FBgn0013733	FBtr0087619,FBtr0087617,FBtr0087616,FBtr0087621	2	4	6	80	2R	9787942	9788949	AACTAGATAAACTGCTCGGAG		59	9787882	9787900	GTATAAGTCGTCCTCCAGC		59	NA	
Drosophila melanogaster	50	CG13343	FBgn0033882	FBtr0087585	2	1	1	60	2R	9747266	9747284	ACATTGGTTGGATCTACGA		58	9747307	9747326	ACTCCGGTGATGTTAAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13339	FBgn0033871	FBtr0087632	1	1	1	65	2R	9712869	9712889	GTAGTTTAATGCAGGATCCTG		58	9712916	9712934	AGCCCTTTATGCAATTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33156	FBgn0053156	FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681	3	5	5	83	2R	9436514	9436532	TTATGGTGACTCCCATCTG		58	9436390	9436470	ATACTGATATCTTCAGCTCCAC		59	NA	
Drosophila melanogaster	50	CG5970	FBgn0033842	FBtr0087701	2	1	1	102	2R	9371547	9371565	CCCTAATCCATCATGTGCT		59	9371395	9371481	ATATCCACTTCGGTTACGC		59	NA	
Drosophila melanogaster	50	AttC	FBgn0041579	FBtr0087653	2	1	1	96	2R	9281505	9281523	TATTGGACAAGTGTTCGCA		59	9281582	9281664	GTGTCCATGATTGTTGTAGC		59	NA	
Drosophila melanogaster	50	CG4712	FBgn0033818	FBtr0087757,FBtr0087758	3	2	2	158	2R	9136976	9136994	AGATGTAGAAACGGTTTGC		58	9136767	9136787	CGATTGTGCTTAGTCATATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mp20	FBgn0002789	FBtr0005009,FBtr0087745	3	2	2	82	2R	9134625	9134644	CATCAACAACTTCCAGAAGG		58	9134689	9134707	TCTTCTCGTACAGATCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17059	FBgn0040754	FBtr0087739	1	1	1	94	2R	9107892	9107910	AACATGAAACCGTCTCTGG		59	9108278	9108296	ATCATCATTCCTGTGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12488	FBgn0033772	FBtr0087851	2	1	1	87	2R	8636959	8637039	AGCAGAAGATTGTCTACTCC		58	8637089	8637107	TTCGAACGGATGTTAACCA		59	NA	
Drosophila melanogaster	50	Lac	FBgn0010238	FBtr0087932,FBtr0087933	2	2	2	81	2R	8341112	8341130	ATATCCTACATCACGCAGG		58	8341175	8341193	ACTCTTTGGCATACTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rho-7	FBgn0033672	FBtr0088045	3	1	1	112	2R	7874864	7874883	AATTCTTAGCGGTCTACCTC		58	7874717	7874789	CATTATAGCTCCAGACGCA		59	NA	
Drosophila melanogaster	50	betaTry	FBgn0010357	FBtr0088122	1	1	1	61	2R	7234352	7234370	ATGTCAACGTGAACATCGT		59	7234395	7234413	GTTTCCGTAGCCATAGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13213	FBgn0033609	FBtr0088180,FBtr0088178,FBtr0088179	3	3	3	82	2R	7174275	7174293	CCAGAAGCTAAAGGTCCTG		59	7174158	7174231	CAGGTGAGTCCATAATTTCCT		59	NA	
Drosophila melanogaster	50	CG12907	FBgn0033511	FBtr0088351	3	1	1	75	2R	6241106	6241124	AGAAATTGAACTGCGTTCC		58	6241163	6241181	TGGTCCCAGAATAATCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hr46	FBgn0000448	FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367	2	4	4	110	2R	6095624	6095704	CAATTTCCGCGATATTTCC		57	6095532	6095551	GAATCTATCGAGAACAGCTC		57	NA	
Drosophila melanogaster	50	l(2)k10201	FBgn0016970	FBtr0088505	2	1	1	60	2R	5287183	5287201	GCAAAGATCAGAGATCTGG		57	5287225	5287243	TTAATGGCCTCCTTCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(var)2-10	FBgn0003612	FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578	1	9	9	80	2R	5005945	5006020	TCATAGATGGCTACTTCCAG		58	5006060	5006081	CATCCTGATGAAGTTGAATCTC		58	NA	
Drosophila melanogaster	50	babo	FBgn0011300	FBtr0088658	2	1	2	90	2R	4842282	4842300	TATATGTGAAACGGACGGC		59	4842354	4842479	AGACTTGTGCAGACATCTG		59	NA	
Drosophila melanogaster	50	Rya-r44F	FBgn0011286	FBtr0088637,FBtr0088639	2	2	4	129	2R	4757835	4757853	CTTCGAATTCGAGGTCCTC		59	4757944	4758440	GACTTTCTCTTCATTGTGTCC		58	NA	
Drosophila melanogaster	50	CSN7	FBgn0028836	FBtr0088742	1	1	1	91	2R	4315223	4315241	CAATTGCATCGAAATGCAG		58	4315293	4315507	GATTGATGAGATCTTGTTCCAC		59	NA	
Drosophila melanogaster	50	CG11508	FBgn0033267	FBtr0088817,FBtr0114490,FBtr0088818	3	3	3	60	2R	4018110	4018131	GGATACCACCTATATTACAACG		57	4018071	4018090	ATAGTCGGCTAGAAAGTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12824	FBgn0033222	FBtr0088830,FBtr0113050	2	2	2	106	2R	3678248	3678269	CTACTTAATGGGTTACTCATCC		57	3678389	3678407	CATAGAATGCCATTCCGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012	3	7	7	84	2R	3287432	3287450	GATCTACGACAAGGAGACG		59	3287308	3287384	GGTGACTTCATTCCTGGTC		59	NA	
Drosophila melanogaster	50	l(2)01289	FBgn0010482	FBtr0086136	3	1	4	86	2R	2620751	2625473	TCTGTTCTACGACAAAGACC		59	2620684	2620703	ATATCGTTCTGATCGCACTC		59	NA	
Drosophila melanogaster	50	CG3270	FBgn0033093	FBtr0086123	2	1	1	60	2R	2582493	2582513	AAGTTTACCACACTGGATCTG		59	2582534	2582553	TAGGCTGTTGGTTTACAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Adf1	FBgn0000054	FBtr0086111,FBtr0086113,FBtr0086112	2	3	3	144	2R	2554510	2554588	ATCCGCATGAAATTACTGTC		58	2554695	2554713	ATCTTGATGGTGTTGAGCA		59	NA	
Drosophila melanogaster	50	CG17528	FBgn0032999	FBtr0111275,FBtr0111277,FBtr0111274,FBtr0111276	3	4	4	83	2R	705345	705363	TTCTATATGCTGTCTGCGG		59	705226	705299	AAACGTCAATCTTTAGCCCA		59	NA	
Drosophila melanogaster	50	CG17665	FBgn0039997	FBtr0111269,FBtr0111268	2	2	2	84	2R	124473	124493	GAGTTTGAGACATACGAACAG		58	124352	124429	GCAATATGTCCTGTATACACC		58	NA	
Drosophila melanogaster	50	CR12628	FBgn0042701	FBtr0085952	2	1	1	60	2L	22226202	22226220	AAACACATACAATGGCCAG		58	22226244	22226262	CTCTTGAATACGGGATTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snRNA:U4:38AB	FBgn0003931	FBtr0081292	2	1	1	83	2L	19810764	19810782	TGAAGTTCTACTGAGGTGC		58	19810829	19810847	GTAGTGGACGGTATTTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34137	FBgn0083973	FBtr0110947	1	1	1	60	2L	22152356	22152374	GTATTCTTCAACGCGATCC		58	22152398	22152416	GGGCTTAGCCCTATTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6448	FBgn0032976	FBtr0113044,FBtr0085939,FBtr0113046,FBtr0085938	2	4	5	85	2L	22140895	22140913	GGAGCATTTAGATCTTGCC		58	22140962	22141603	AAACAGCATCTTGATCCTG		57	NA	
Drosophila melanogaster	50	Gr39a	FBgn0041244	FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510	2	4	4	90	2L	21297292	21297310	AAACAGCAAAGATGCTGAC		58	21297471	21297490	TTCTGTCGAAGGTTCTTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gr39a	FBgn0041244	FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510	2	4	4	90	2L	21297292	21297310	AAACAGCAAAGATGCTGAC		58	21297471	21297490	TTCTGTCGAAGGTTCTTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9264	FBgn0032911	FBtr0081463,FBtr0081462	2	2	2	80	2L	21079050	21079070	TCTAATTACGGGATTGGTCAG		59	21079110	21079298	TCCTGAGATCTATAATGCACC		58	NA	
Drosophila melanogaster	50	CG9316	FBgn0032878	FBtr0081396	2	1	1	216	2L	20725040	20725116	CTATATTGACGCATCCGGA		59	20724782	20724800	CAGCTACGGTTCCTTATGG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	spi	FBgn0005672	FBtr0081271,FBtr0081269,FBtr0081268,FBtr0100597	3	4	7	209	2L	19571730	19571748	TACAGAAACGAGAAGAGCC		59	19569194	19569212	ACGTAAACGTTGAGTTAGG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG31798	FBgn0051798	FBtr0081200	2	1	1	72	2L	19395239	19395257	GTACTACCTGATCCAAGGG		58	19395350	19395369	TCTCTTGTAACACGAAGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	amos	FBgn0003270	FBtr0081081	3	1	1	68	2L	18596360	18596378	TACGAAACTCTGCAAATGG		58	18596310	18596328	CTAGTAGTCTCTGGACAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17681	FBgn0032668	FBtr0081038	2	1	1	61	2L	18154047	18154067	GATTGTATGAGAAGGAGTTGG		58	18154090	18154161	GAATCCACTTTGCAGTCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13282	FBgn0032612	FBtr0080929	1	1	1	117	2L	16833482	16833500	AAGATTATCATCCACGGCT		58	16833243	16833261	AAAGGATACTCCAGTCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mdy	FBgn0004797	FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917	1	4	4	86	2L	16820786	16820804	ATAACGCCCTAATCCTGAG		58	16820919	16825419	CAATTATTTCCATGGCTAGACC		59	NA	
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080898,FBtr0080903,FBtr0080900	2	3	13	98	2L	16779121	16779139	AAGGGTATTGAGGATCCCA		59	16779199	16780558	GAAGAACACCTTTGTGTTACC		59	NA	
Drosophila melanogaster	50	CG31812	FBgn0051812	FBtr0080890	3	1	1	62	2L	16730068	16730089	CTCAGCTGGTTATTTAATGGAC		59	16730112	16730130	TTCTCATTGTGCTCTTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4631	FBgn0032590	FBtr0080871	1	1	1	60	2L	16608979	16608997	ACACCAAACCAGTATTCCC		57	16609018	16609039	GCACTATCTTTCCTTGATTGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	BicC	FBgn0000182	FBtr0080805,FBtr0080804,FBtr0080803	3	3	3	156	2L	16045383	16045852	CAATGTTCAGGTCATATTCTCC		58	16046029	16046047	GACATTCACCAGGATTTGG		58	NA	
Drosophila melanogaster	50	ms(2)35Ci	FBgn0011239	FBtr0080732	1	1	2	62	2L	15293144	15293219	GCCTGTAATTGTATCTGCG		58	15293245	15293263	CACTAAACCTCCGATTGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	vig	FBgn0024183	FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720	1	4	4	81	2L	15065447	15066946	GATAGAACTGGTGTGAAGTC		57	15065385	15065403	CATCAATAGCCTCCTTGAC		57	NA	
Drosophila melanogaster	50	ck	FBgn0000317	FBtr0080723,FBtr0080724	3	2	2	84	2L	15051456	15051541	GGCTGCTGATTACAAATATCTG		59	15051393	15051412	TCGAATGTCAGAGAATTCGG		59	NA	
Drosophila melanogaster	50	CG15279	FBgn0028886	FBtr0100264	1	1	3	94	2L	14848737	14848758	CCGATTTACTATCTGGAAATGG		58	14848335	14848683	TTGTCATACTCTTTCATCGC		57	NA	
Drosophila melanogaster	50	CG32970	FBgn0052970	FBtr0114461,FBtr0080622	3	2	2	81	2L	14309124	14309142	AGCAACACTTTATACCGCT		59	14309420	14309438	TTAGGCTGGCTTTCTATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16884	FBgn0028544	FBtr0080557	1	1	1	96	2L	13946039	13947098	GAAAGTATTCATCTGCTTAGCC		59	13945964	13945982	CTTGTCCAGCTTCTTCTCC		59	NA	
Drosophila melanogaster	50	cenG1A	FBgn0028509	FBtr0080548,FBtr0080546,FBtr0080547	1	3	3	148	2L	13896607	13896625	GGAGATCTTCAAGAGCCTG		59	13896737	13896819	TAGCCCATTCAGGATTTGG		59	NA	
Drosophila melanogaster	50	Rep4	FBgn0028406	FBtr0080478	1	1	1	130	2L	13285634	13285706	TCATTACAACAGATGCCGA		58	13285522	13285540	ATACTCCGTTATCATGCGG		59	NA	
Drosophila melanogaster	50	CG5458	FBgn0032478	FBtr0080437	2	1	1	60	2L	13184328	13184349	CTTCAACAATCGATACCTTCTG		59	13184370	13184388	CGCCTTCATGTTGTAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6180	FBgn0032453	FBtr0080398	3	1	1	68	2L	12707871	12707889	ATTCAGCTGTCAACTTTCC		57	12707919	12707939	CCTTGGTTAGGATAGAATTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17036	FBgn0032449	FBtr0080408	2	1	1	60	2L	12699261	12699279	ATCAGTACGTGGTTTACGG		59	12699219	12699240	GACCCAATTATGGATATTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nub	FBgn0085424	FBtr0112642	2	1	2	119	2L	12614102	12614120	ATAAGGTCCTGGAACTGAC		58	12614201	12622983	GACTGATATCATTTGGGTCCT		59	NA	
Drosophila melanogaster	50	rab3-GAP	FBgn0027505	FBtr0080302,FBtr0080301	3	2	2	91	2L	12060791	12060877	CAACAACTGTGATGAAGTAGTG		59	12060721	12060739	AGTCATGGATGTGTTCACC		59	NA	
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0100487,FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100489,FBtr0100486	3	8	10	90	2L	10805681	10805699	CCAGTTGATTGTCCAGGAG		59	10804887	10805627	AATGCACTTCCTGATGGTC		59	NA	
Drosophila melanogaster	50	Rsf1	FBgn0011305	FBtr0080079	2	1	1	88	2L	10263356	10263374	CAATCTGACCGACAAAGTG		58	10263286	10263304	GATTGAAGGCTATCCACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pten	FBgn0026379	FBtr0089905,FBtr0089902,FBtr0089901,FBtr0089903,FBtr0089900,FBtr0089904	3	6	6	87	2L	10258782	10258800	TCAGCGTCGATATGTTCAG		59	10258642	10258734	GCGTATTTCACATACGTTAAGG		59	NA	
Drosophila melanogaster	50	NPC1	FBgn0024320	FBtr0079957	3	1	1	99	2L	10216932	10216950	GTTAAACTTTGGGCTTCGC		59	10216791	10216871	TGATGATTATCTGTTCCAGCC		59	NA	
Drosophila melanogaster	50	CG5734	FBgn0032191	FBtr0079960	2	1	1	60	2L	10206181	10206199	TACTGGGACTCCAGTAGAG		58	10206139	10206157	AGAGCAAATTCAATGCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13125	FBgn0032163	FBtr0079898	2	1	2	103	2L	9924157	9924307	GATACGGTAGAAGGCATCG		59	9924072	9924090	AGGGACAATGGGAAATCTG		59	NA	
Drosophila melanogaster	50	CG4537	FBgn0032153	FBtr0113031	3	1	1	64	2L	9890998	9891016	AAATCAACGAGAACAAGGC		58	9891044	9891062	TAAAGCAGTCCCTATGGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34183	FBgn0085212	FBtr0112376	1	1	1	77	2L	9890408	9890426	AAACTTTGCGGATATCCAC		58	9890286	9890304	TTTGGAAGCGGAGATACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33299	FBgn0053299	FBtr0079845	1	1	1	60	2L	9657068	9657087	AAGAAGATACCCTACACCGT		59	9657110	9657128	CGGGATAAGGTTTCTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gcm	FBgn0014179	FBtr0079855	3	1	1	60	2L	9580391	9580409	ATACGTCCAGTTTGACCAG		59	9580349	9580369	CCATTGTAGTAGCCATAATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hnf4	FBgn0004914	FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846	1	4	4	99	2L	8688854	8688935	TCTTCTTCGATCCCAATGC		59	8688773	8688793	CGATCTGATATGTAGTCCTCG		59	NA	
Drosophila melanogaster	50	CG13095	FBgn0032049	FBtr0079701	3	1	1	60	2L	8495405	8495424	CTTACATTACCCTCTCCGAG		58	8495364	8495382	CTTGAGCAGTCCAGATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acp29AB	FBgn0015583	FBtr0079716	2	1	1	61	2L	8392867	8392885	CAAGATGAGACGATTCGAG		57	8392824	8392845	GCATTAGATTCTTCTCGATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Snoo	FBgn0085450	FBtr0112719,FBtr0112721,FBtr0112718	2	3	5	109	2L	7975259	7975277	AATACCAGATCATCCTCGA		57	7896734	7896752	GTCATCCATGAGCATTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Herp	FBgn0031950	FBtr0079493	2	1	2	169	2L	7797722	7798170	ACTCTACGTTCTACGTTGC		59	7797571	7797590	TTAATCTGAGGATCAGCAGG		58	NA	
Drosophila melanogaster	50	CG7144	FBgn0025687	FBtr0079495	3	1	1	129	2L	7791868	7791948	ATCCTAGACGGTGAGATCC		59	7791757	7791778	CTTAATTTAGCCATCTGGAGGT		59	NA	
Drosophila melanogaster	50	Mnn1	FBgn0031885	FBtr0110978,FBtr0079401	1	2	3	83	2L	7059186	7060972	CACAAAGGAGGAGAAATCCA		59	7061018	7061036	TTGAGAATCTTCTCGCCAC		59	NA	
Drosophila melanogaster	50	Pcp	FBgn0003046	FBtr0079388	1	1	1	60	2L	7022219	7022237	TTCAGGATCATACGATCCC		58	7022261	7022279	GTGAGGTAAATGGTCTTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Atac1	FBgn0031876	FBtr0079362	2	1	1	60	2L	6959762	6959780	CAGATTCGGGAAGATAGCG		59	6959720	6959739	ACGACTATACACTTGCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11322	FBgn0031856	FBtr0079387	2	1	1	60	2L	6758249	6758267	CTACGTTGCTACTACTGCC		59	6758207	6758226	ACATCTCTGACTTCCAAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GRHR	FBgn0025595	FBtr0079308,FBtr0079310,FBtr0079309	1	3	3	96	2L	6713835	6714562	GTGTACAGCATACTGTTTGTG		59	6713759	6713777	TATCAATACGCAAGGGACC		59	NA	
Drosophila melanogaster	50	CG9147	FBgn0031774	FBtr0079190,FBtr0079189	2	2	2	150	2L	6067221	6067292	GGTACTTGAGAAGCTGGTG		59	6067406	6067424	GTAAACCTTCTCCAGACGG		59	NA	
Drosophila melanogaster	50	CG18266	FBgn0031724	FBtr0079109	2	1	1	61	2L	5597301	5597320	GAAAGTTGAGGATAAAGCGA		57	5597344	5597362	CATCGCCTTTGTTCATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hel25E	FBgn0014189	FBtr0079123,FBtr0079125,FBtr0079124	3	3	3	84	2L	5539760	5539781	TACTTAACGAAGTACAGGATCG		59	5539635	5539717	CGTCCCTCAATGTATGTAGAG		59	NA	
Drosophila melanogaster	50	CG7382	FBgn0031708	FBtr0079130	1	1	1	189	2L	5519367	5519385	GTACAGGATGCAATTGGTG		58	5519141	5519214	GTTTACCAGAGTCACTCCT		58	NA	
Drosophila melanogaster	50	tkv	FBgn0003716	FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086	2	4	4	228	2L	5221390	5221470	TTCTCATGTGCAAGGTAGC		59	5221180	5221198	AAACATAAGCTAGCCACGA		58	NA	DesignRelaxed
Drosophila melanogaster	50	qtc	FBgn0028572	FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260	2	5	7	99	2L	5069212	5070107	CGCGTAAGACCATTTATCG		58	5070169	5070188	TAGAAGATAGCGCTCTTGAG		58	NA	
Drosophila melanogaster	50	CG9121	FBgn0031675	FBtr0079032	2	1	1	245	2L	5048821	5048839	CTCAGATCGAATTGCACAC		58	5048523	5048541	AAGATACCTTTCCTGCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)05714	FBgn0010607	FBtr0079050,FBtr0079051	3	2	2	60	2L	4970475	4970494	ACAGAATGAAACAGATCTCC		57	4970434	4970453	GAGCTGTATCATCTCTTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gs1l	FBgn0019982	FBtr0077453	3	1	2	286	2L	4456249	4456267	TTTGAGATCAAGGAGCAGG		59	4455606	4455624	ACCTTGTGGTTAAACAGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3513	FBgn0031559	FBtr0077549	1	1	1	242	2L	3693147	3693165	AAGTATATCGGCTTTGTCG		57	3692862	3692880	GCATTCACTCTTGGTAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdsw	FBgn0021967	FBtr0077520,FBtr0077521	2	2	2	77	2L	3467051	3467139	GGTTCATCAAGTATGGCGA		59	3467180	3467198	AGATCAGACGATGCTTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2772	FBgn0031533	FBtr0077516	1	1	1	175	2L	3447081	3447153	CTTAACCAGACTCTGCTCC		59	3447292	3447310	GTGAGATCATATGCCGGAG		59	NA	
Drosophila melanogaster	50	pgant2	FBgn0031530	FBtr0077592	2	1	1	83	2L	3406230	3406468	CTTCGGCAACATTGATGAC		59	3406165	3406186	GGATAGACATTCTCCAGATACC		59	NA	
Drosophila melanogaster	50	CG34394	FBgn0085423	FBtr0112641	2	1	4	126	2L	3363096	3363114	CATTGAGAAGAACACGTGG		58	3362708	3363006	CTGATTCATGCCTCTCCTC		59	NA	
Drosophila melanogaster	50	CG17224	FBgn0031489	FBtr0077672,FBtr0077671	1	2	2	80	2L	3017716	3017788	GATGTTAGGGTCATCTGCA		59	3017654	3017675	CACTACCAGGATATCTCTTAGG		58	NA	
Drosophila melanogaster	50	CG3515	FBgn0031431	FBtr0077750	1	1	1	60	2L	2552246	2552267	CCATGCAAAGACTATCAATAGG		58	2552207	2552225	ACTGATGAACACATTCTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	oaf	FBgn0011818	FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780	2	4	4	104	2L	2495396	2495415	GTATTACCTCCAACATTGGC		58	2495482	2495582	GGATTTGAACCTCATTGCG		59	NA	
Drosophila melanogaster	50	CG14351	FBgn0031349	FBtr0077875	3	1	1	145	2L	1600689	1600707	TGCTACTCCCACTTATCCT		59	1600816	1600970	AAAGTCCACCTGATCACAC		59	NA	
Drosophila melanogaster	50	CG33923	FBgn0053923	FBtr0091927	3	1	1	156	2L	1341716	1341734	GATTGAATGGCTACAAGCC		58	1341510	1341596	ATGATATCGTGGTCGTAGG		58	NA	
Drosophila melanogaster	50	CG14339	FBgn0031301	FBtr0077954	2	1	1	90	2L	1110415	1110489	GACTTTGCGAATCTCTGTG		58	1110543	1110561	TATCGAAACCCTCGTTCTC		58	NA	
Drosophila melanogaster	50	ia2	FBgn0031294	FBtr0089789,FBtr0089790	3	2	2	81	2L	1014711	1014792	GTATCACATCTATGAGGTTCAC		58	1014651	1014671	GTTCTTCAGGTAGAAAGAACG		58	NA	
Drosophila melanogaster	50	CG13949	FBgn0031288	FBtr0078017	1	1	1	188	2L	855570	855588	CAACGACAAATACATGGCC		59	855803	855878	ATTTCCAGAGCCTTCAAGG		59	NA	
Drosophila melanogaster	50	CG4133	FBgn0031257	FBtr0078061	1	1	1	106	2L	457243	457261	TGAGTAAGCTGAAGAACCG		59	457328	457410	GTTCATTTCATCTTCCATCTCC		59	NA	
Drosophila melanogaster	50	Plc21C	FBgn0004611	FBtr0078047,FBtr0078048,FBtr0078051,FBtr0078050,FBtr0078049	3	5	5	103	2L	344853	344871	GTCACTGGAGAGGTTATGC		59	344937	345017	CGTTTCATTCTGATCAGCTC		59	NA	
Drosophila melanogaster	50	CG11617	FBgn0031232	FBtr0078146	1	1	1	179	2L	205204	205281	ATATGACCAGGCAGAAAGC		59	205043	205061	TTTAGATATGGTGCCAGCG		59	NA	
Drosophila melanogaster	50	net	FBgn0002931	FBtr0078162	1	1	1	60	2L	83310	83331	CTTAGAAGCTGTAACATCAACC		59	83271	83291	CTCGTCTTTCTTTCGTTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32512	FBgn0052512	FBtr0077262	3	1	1	136	X	20934436	20934840	CATTTGTCTCGGGACTCTC		59	20934318	20934336	ATACTTGGCATACACCACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	obst-A	FBgn0031097	FBtr0077334	2	1	1	185	X	20113182	20113200	CTGGTACAAGGATGTGGAC		59	20113349	20113367	ACTAAGACGCGAATCTGTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9576	FBgn0031091	FBtr0070027	3	1	1	218	X	20056014	20056032	GTGCAACAACACAGATGTG		59	20055750	20055768	AGGTAATGTGACGGATTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nat1	FBgn0031020	FBtr0074711	3	1	1	133	X	19376302	19376320	TACGCCAACACTCATTGAG		59	19376416	19376501	ACTTCGAATTGATGTAGCGA		59	NA	
Drosophila melanogaster	50	CG6769	FBgn0030878	FBtr0074493	3	1	1	111	X	17756133	17756151	AACACATGATCGACAAGGG		59	17756226	17756317	ATGCCCTCATTATTGTCCG		59	NA	
Drosophila melanogaster	50	CG6398	FBgn0030870	FBtr0074462	3	1	1	84	X	17734948	17735029	TACCTGATGCCAGTTTACTC		59	17735076	17735094	AAGGTCCTGGGTAGATCTG		59	NA	
Drosophila melanogaster	50	Arpc3B	FBgn0065032	FBtr0113478,FBtr0074410	1	2	2	60	X	16999552	16999572	GATGAGTCACTCTACTTCTGG		59	16999016	16999531	CCGACTTAACTTCGTAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9777	FBgn0030764	FBtr0074287	3	1	1	62	X	16525750	16525768	TTTATCGGAGAACAGGTGC		59	16525706	16525725	CTTGTTGCGAGAAATAAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32576	FBgn0052576	FBtr0100556,FBtr0074245	2	2	2	148	X	16182149	16182258	TATTCTATTCATATCGGGCCTG		59	16182022	16182040	TAATCATGCCGAAGATGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	PGRP-LE	FBgn0030695	FBtr0074183	1	1	1	156	X	15695627	15695717	AGTGCTTCCACATTGAGTC		59	15695489	15695508	CATCCAATGAAACTGATCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15645	FBgn0030657	FBtr0089702	3	1	2	284	X	15471783	15471846	AAGTCGTGTCCGATTTCAG		59	15471517	15471535	CTTGACCATTTGTTTCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9123	FBgn0030629	FBtr0074019	2	1	1	89	X	15235172	15235190	CTTCATTCTTGCACACGAG		59	15235007	15235119	ACTTTGATTTGACCAGCGA		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG9106	FBgn0030624	FBtr0074021,FBtr0074022	3	2	2	91	X	15165664	15165682	GTGATGGTAACGGTAGTGG		59	15165591	15165609	ATCGAACATCTCATGGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9509	FBgn0030594	FBtr0073978	3	1	1	60	X	14801228	14801248	TTGTTCTACTCTCACATCCTG		59	14801188	14801209	TTGGGATCTGTACTCTTTAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14408	FBgn0030581	FBtr0100150,FBtr0073990	1	2	4	238	X	14725645	14725663	ATCAACCGATACGAAGTGG		59	14725332	14725350	AGGTAGACCATCTCCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	tth	FBgn0030502	FBtr0073849	2	1	1	60	X	13509759	13509777	CCAGATCTACACGTATCCG		59	13509717	13509735	CTTGCTCAAGTACTGACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2453	FBgn0030460	FBtr0073737	3	1	1	82	X	13087658	13087732	CATGTGGATAAGGTTCTTTCTG		59	13087597	13087615	GTCAGATGACTGAACTCCA		58	NA	
Drosophila melanogaster	50	CG10362	FBgn0030358	FBtr0073590	2	1	1	82	X	11823534	11823756	TAACGCTTAGGGTCAAACAG		59	11823471	11823490	GAAACTAATTGACCAGTGCG		59	NA	
Drosophila melanogaster	50	CG34348	FBgn0085377	FBtr0112557	2	1	1	136	X	11234653	11234671	TCTGGACTATTCGCTATGG		58	11234771	11237289	TTATTACCTGCCTGTGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Yp2	FBgn0005391	FBtr0071424	1	1	1	79	X	9946440	9946458	CAACCTGAAGGAGGTTACC		59	9946311	9946397	GGTAGAGCTTGTCCAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33557	FBgn0053557	FBtr0091534	3	1	1	140	X	9903494	9903622	ATGTTAATTCGGCCTACGAG		59	9903724	9903800	ATTCAGTGCCTGTTTCTAGG		59	NA	
Drosophila melanogaster	50	nAcRalpha-7E	FBgn0015519	FBtr0071177	3	1	1	84	X	8195919	8200688	ATGGATTTCAGGTGGATCTG		59	8195854	8195872	TAGAACTCGGACAGATCCA		59	NA	
Drosophila melanogaster	50	CG15330	FBgn0029987	FBtr0071099	1	1	1	62	X	7850387	7850405	AGATCAGACGCAATCATCC		59	7850428	7850449	CCAAGGTGTTATTATTGGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5937	FBgn0029834	FBtr0112952	2	1	2	170	X	5934814	5935631	CTTACGATAAGCTGTACCG		57	5936299	5936317	CGATGTAGAATCGTTCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070765,FBtr0070767,FBtr0070769,FBtr0070766	3	7	7	81	X	5270146	5270164	GGAACAGATCTCATCTGGA		58	5270207	5272344	TTCCATATACCTAGGGTAGTC		57	NA	
Drosophila melanogaster	50	GlcAT-I	FBgn0066114	FBtr0070644	3	1	1	64	X	4025518	4025600	AGCTAACCAGACTATCTCAC		58	4025627	4025645	GTCCTCCACAATGATCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ec	FBgn0000542	FBtr0112801	1	1	3	156	X	3714992	3715010	AAGGGACTACTCAATGGAC		58	3735438	3745002	AAAGTTCCTTTAGAGCGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10804	FBgn0029663	FBtr0070592,FBtr0114487	2	2	3	116	X	3373349	3373427	AATAGTGCTTCCGGAACAG		59	3373251	3373269	GATTCCCAGGGTAAAGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3191	FBgn0023525	FBtr0070417	1	1	1	109	X	2145307	2145325	CTCATCGAGGTGAACTACG		59	2145116	2145235	GGTAGAATGTCTGCGTAGTC		59	NA	
Drosophila melanogaster	50	CR41583	FBgn0085805	FBtr0114259	2	1	1	60	U	6962694	6962713	GACAAAGTGACTTAGTGCTG		58	6962653	6962672	CTAACAAGGACTTAGTAGCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41536	FBgn0085675	FBtr0114123	1	1	1	60	U	8007485	8007550	TTATCCCTATGGATCGATAGG		57	8007445	8007463	ATCTCGGTGTTCAGTACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40188	FBgn0058188	FBtr0113821,FBtr0113822	3	2	2	61	U	2232922	2232940	ATCTGCGCTATATCTCGTC		58	2232965	2232983	AACAACTGCATGCAATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32006	FBgn0052006	FBtr0089170	1	1	1	87	4	173539	173619	ACCAACACTCCCATTTCTG		59	173670	173688	TTGAATTTGAAGCCAGCAC		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-1295	FBgn0083055	FBtr0113584	3	1	1	60	3R	16648390	16648410	CTAGATAAAGTGCCAGAATCG		58	16648432	16648450	ATATTCCAGCTCTGCAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-291	FBgn0065064	FBtr0091755	3	1	1	63	3R	7049445	7049464	TATATTCCAGTAACGGTGCG		59	7049488	7049508	GTACGTGATATGGTTTAACCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ef1alpha100E	FBgn0000557	FBtr0085834,FBtr0085835,FBtr0085833,FBtr0085832	2	4	4	186	3R	27567382	27567401	TCACCGAAGTAAAGTCTGTG		59	27567550	27567645	TTGAGCACAATCACCTGAG		59	NA	
Drosophila melanogaster	50	CG31019	FBgn0051019	FBtr0085665	2	1	1	81	3R	26424349	26424431	TACAACGAAGATGGCTATTACC		59	26424473	26424491	GCAGGATGTTAATGAAGCG		59	NA	
Drosophila melanogaster	50	CG15535	FBgn0039764	FBtr0085629	2	1	1	119	3R	26249272	26249290	GGAGAAAGTTAGAGCGGAC		59	26249171	26249189	ATGCGATCCTTCATCAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34133	FBgn0083969	FBtr0110887,FBtr0110888	1	2	2	81	3R	25697035	25697054	CATACAGAGCATGACATCAC		58	25697097	25697184	GCGATCTATGCTTATAGCAG		58	NA	
Drosophila melanogaster	50	CG1969	FBgn0039690	FBtr0085475,FBtr0085474	1	2	2	258	3R	25566141	25566308	GGAGGAGACATATCTGTACG		58	25566590	25566608	GACGGTGACAAAGTAGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sirt7	FBgn0039631	FBtr0085364	3	1	1	123	3R	24882027	24882265	AAGGGTCTCGATGATACTG		58	24882352	24882370	GTATATCTCTACCCGCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1443	FBgn0039620	FBtr0085345	3	1	1	84	3R	24820572	24820667	TAACTTGAAGGCTCTCGTC		59	24820506	24820524	GGTGCCACTGTAGAATCTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG9990	FBgn0039594	FBtr0085309,FBtr0085308	3	2	2	105	3R	24518604	24518622	ATCTACAAGTGCATCAGCC		59	24518690	24518874	GCAACGAGATGTTGTTACTG		59	NA	
Drosophila melanogaster	50	Sce	FBgn0003330	FBtr0085245	2	1	1	60	3R	23506414	23506432	GTTGGTTATCCTGAATGGC		58	23506315	23506391	TACCTTCCAGAATTTGTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14259	FBgn0039483	FBtr0085104	3	1	1	138	3R	22920690	22920708	ATCCCATGAGAGTTAGGGA		58	22920810	22920952	AAGTCTTTCTTGCTCACAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Ets97D	FBgn0004510	FBtr0085088	3	1	1	104	3R	22738303	22738322	AATGTTCGAGGATAGCATCG		59	22738157	22738236	ACAAGTGATTTGAGCATGC		59	NA	
Drosophila melanogaster	50	CG6478	FBgn0039436	FBtr0085057	1	1	1	131	3R	22449121	22449207	CATTGTCCTGTGTTTGGTG		59	22449008	22449026	CCTCCAATAGATCCACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL34a	FBgn0039406	FBtr0084973,FBtr0084972	2	2	2	79	3R	21884404	21884422	ATCGAAGAGCAGAAGATCG		59	21884343	21884362	TTCTCCACAACCTTCTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5071	FBgn0039347	FBtr0084884,FBtr0084885	1	2	2	60	3R	21445457	21445475	CAGTACAAACAGCCAAAGC		59	21445496	21445517	CAATTCTCGAAGTCCATATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11859	FBgn0039306	FBtr0084816	3	1	1	74	3R	21092243	21092261	TTAATGGACCTCGTCAAGG		58	21092350	21092369	ATCATCGTAAACTTGTGGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Esp	FBgn0013953	FBtr0084703	1	1	1	264	3R	20673094	20673950	TATACTCACTGAAGACGGC		58	20674178	20674266	ATACAAGCCATAGGCTACG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG6631	FBgn0039206	FBtr0084645	2	1	2	82	3R	20358455	20358474	GGATTGTGCTGAATTAACGG		59	20358516	20358593	GTATAATGTTAGCATCGGTTGG		59	NA	
Drosophila melanogaster	50	Rpn9	FBgn0028691	FBtr0084469,FBtr0084470	1	2	2	80	3R	19557825	19557843	TTCTTGAGTCGCTTAAGGG		59	19557702	19557781	ACTTGTTAATATCGCCCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17381	FBgn0039079	FBtr0084415	2	1	1	60	3R	19310801	19310821	CCTTTAATACATCCTACGGCT		59	19310843	19310861	TGCTCCTCGTAAATCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6921	FBgn0038985	FBtr0084262,FBtr0084261	2	2	3	86	3R	18380434	18380453	ATAAAGATTGTCGAGGAGCG		59	18380566	18380585	CATAGGTGAGCTCATTAGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5379	FBgn0038956	FBtr0084235	1	1	1	161	3R	18213228	18213246	ATACCCAAATTGTGGTGGA		58	18213028	18213105	GGAACCTTAAATTCCACTGTG		59	NA	
Drosophila melanogaster	50	Synd	FBgn0053094	FBtr0083966	2	1	1	97	3R	16664080	16664098	GATCAACAATGCAGACCAG		58	16664156	16664244	CCGTATATTCCACAAATGATGG		59	NA	
Drosophila melanogaster	50	KaiRIA	FBgn0028422	FBtr0083938	2	1	1	80	3R	16475948	16476024	TTCATGAATTTGGGCATAGC		58	16475887	16475905	AAATGGGTCCATGAAGGAG		59	NA	
Drosophila melanogaster	50	Pi3K92E	FBgn0015279	FBtr0083940,FBtr0083941	3	2	2	85	3R	16457026	16457248	GTGCTTACACTTTCTGAAAGAC		59	16456962	16456980	TTTCCAGGTACGATTCGTG		59	NA	
Drosophila melanogaster	50	GluClalpha	FBgn0024963	FBtr0100128,FBtr0083788,FBtr0083787,FBtr0100127	3	4	4	110	3R	15578394	15579482	GCTTCACTAGCAAATAATGCC		59	15579552	15579572	TATTCCAGATGGTCGTATTCG		59	NA	
Drosophila melanogaster	50	gukh	FBgn0026239	FBtr0089767	3	1	4	150	3R	14839139	14839157	CGATCAGAAGGAGATCCAG		58	14846750	14846768	TGCAGTGTCCAATAGATGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14318	FBgn0038544	FBtr0083530	2	1	1	122	3R	13608133	13608154	GTGACTGCGAATGTTATAAACC		59	13606482	13606501	GGTATTACGTCGTTTCTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14898	FBgn0038437	FBtr0083308	1	1	1	60	3R	12307830	12307850	ACAGCTCTTTATGACAGAGTG		59	12307734	12307752	AATCCCTAGTTGTTGGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mst89B	FBgn0020399	FBtr0083260	2	1	1	134	3R	12093123	12093141	TTTGGATGATCTTCTCCGC		59	12093314	12093332	TAGCAAAGTGGTAAACGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	trx	FBgn0003862	FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949	2	5	5	82	3R	10091189	10091209	TATGTTGGAGTCTTCAGATCC		58	10091050	10091145	TCGATAACCATTTCACCCG		59	NA	
Drosophila melanogaster	50	CG14359	FBgn0040559	FBtr0082893	2	1	1	92	3R	9978182	9978200	GTGTCCTACAGGAACATGG		59	9978255	9978274	ATGAAGTTCTTTGCTCTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	140up	FBgn0010340	FBtr0082909	1	1	1	74	3R	9950582	9950662	TTACCACATCCTACTTCGG		58	9950526	9950546	CCAAGTATTCGTAGATTGAGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9922	FBgn0038196	FBtr0082870	1	1	1	185	3R	9861389	9861548	CAGATTTGGAACGTGTGAC		59	9860988	9861171	GCAGCTCGTTCATAATCAG		58	NA	
Drosophila melanogaster	50	Hsp70Bc	FBgn0013279	FBtr0082638	1	1	1	60	3R	8336531	8336550	AACATCACGATCAAGAACGA		59	8336573	8336591	TCACCATGCGATCAATCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	trus	FBgn0038055	FBtr0082634	3	1	1	191	3R	8283439	8283457	CAGGAGTACAAGCTGAGAG		59	8283612	8283689	CGTATCCCGCGAATATCTC		59	NA	
Drosophila melanogaster	50	Pp1-87B	FBgn0004103	FBtr0082595	1	1	1	60	3R	8251194	8251212	TACTACGATCTGTTGCGTC		59	8251152	8251170	ACAGGTAATTCGATTCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4848	FBgn0037998	FBtr0082624	3	1	1	124	3R	8042636	8042654	AAGAGTTACTAGCGCAGAG		58	8041603	8041621	ATTTGGATTTGCTGCTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	dpr17	FBgn0051361	FBtr0082543,FBtr0082542	3	2	2	100	3R	7936142	7936161	AGATTAGCGATAGTGACGAG		58	7936224	7936318	AATTAATGAGCCGATCGTG		57	NA	
Drosophila melanogaster	50	CG3532	FBgn0037979	FBtr0113224	2	1	1	91	3R	7840084	7840102	GTTCCCGTGCTAAATACCA		59	7840156	7840238	CCATCTGCAGAAACTTTCTG		59	NA	
Drosophila melanogaster	50	CG31116	FBgn0051116	FBtr0082527,FBtr0082528,FBtr0113390,FBtr0082526,FBtr0113391	1	5	5	80	3R	7626255	7626326	TTGCTTTGATTGGACTTGTG		59	7626194	7626215	ATCTCATGAAGAGGACATATCG		59	NA	
Drosophila melanogaster	50	CG14714	FBgn0037929	FBtr0082422,FBtr0113222	3	2	3	108	3R	7498790	7498808	CAGCCACGAGATTAATGGA		59	7498982	7499001	TATAATGGTACCGGTTCGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	ninaG	FBgn0037896	FBtr0082404	1	1	1	83	3R	7247094	7247191	TTGACTACGTGATTGTGGG		59	7247029	7247047	GAAGAACACTCCCATTGCT		59	NA	
Drosophila melanogaster	50	scpr-A	FBgn0037889	FBtr0082357	1	1	1	60	3R	7066936	7066956	CTCCAATTGATTCTCCTAGCT		59	7066978	7066996	GGAGAGCACAATAGTCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED7	FBgn0051390	FBtr0082311	2	1	1	205	3R	6586246	6586326	GATTGACGATATCAGTCTGC		58	6586060	6586078	CATCATCTAGAACCGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rlc1	FBgn0014023	FBtr0082121	3	1	2	77	3R	5340821	5340842	CTTAAAGTACAGGGAGAAACTC		58	5340712	5340730	AGGATCATCATGACTTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8129	FBgn0037684	FBtr0082026,FBtr0082027	1	2	2	119	3R	5192794	5192813	AGTGGCTATCCTAAGATTGG		58	5192895	5192977	ACCACAACTTTCTTTCCCT		58	NA	
Drosophila melanogaster	50	CG8866	FBgn0037679	FBtr0082056,FBtr0082055	1	2	2	81	3R	5158579	5158659	ACAGCTATATGCCCTTTCG		59	5158516	5158535	GTAGAGGTATAGCTCACCCT		59	NA	
Drosophila melanogaster	50	CG11964	FBgn0037644	FBtr0082015	2	1	1	80	3R	4768859	4768939	AGCATAATGAGGGAATACGC		59	4768798	4768819	AGATAATATGTGGTTCTGCTCC		59	NA	
Drosophila melanogaster	50	CG9731	FBgn0037640	FBtr0081929	2	1	1	62	3R	4688228	4688246	GAATTCCCTCAGCAATTCG		58	4688184	4688202	TATATGAACCTTGGGTGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11737	FBgn0037592	FBtr0081869	1	1	1	80	3R	4346202	4346221	GAAGATGATCTTCAACCGTG		58	4346263	4346336	CAGGACACCGACTTATAGAG		58	NA	
Drosophila melanogaster	50	CG1239	FBgn0037368	FBtr0078720	1	1	1	176	3R	1560031	1560049	TAATTTCTGTGATTCCGGC		57	1560258	1560276	GTGAAATGATCAGGTCGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pcmt	FBgn0086768	FBtr0078758	1	1	1	80	3R	1378764	1379007	CAGTACATGCAACAGTACG		58	1378702	1378720	GAGAGGGACGTACATTACG		59	NA	
Drosophila melanogaster	50	CG12173	FBgn0037305	FBtr0078821	2	1	1	117	3R	1081337	1081417	GGATATTCCAGGAGAAGCG		59	1081238	1081256	CGGAATCAACTCGAATCCA		59	NA	
Drosophila melanogaster	50	cno	FBgn0000340	FBtr0078832,FBtr0078833	1	2	2	88	3R	1007198	1007281	CATCAGTTTAATGCTCGCAG		59	1007129	1007147	TTGCTGTTCTTGTGTAGCT		59	NA	
Drosophila melanogaster	50	CG12582	FBgn0037215	FBtr0078964	2	1	2	123	3R	23485	23503	CCCTTGGGCATATACAGTG		59	23590	23995	AGTGATGAACGTCGAACTG		59	NA	
Drosophila melanogaster	50	CR41184	FBgn0084048	FBtr0111303	1	1	1	65	3L	22977814	22977832	AATACAAACCAGTAGGCAC		57	22977861	22977879	TATGAACAGTTCATGGCCA		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR15821	FBgn0035311	FBtr0072914	1	1	1	63	3L	2172118	2172189	AAATTGGGAATGGCTTCAG		58	2172073	2172091	TGATCCGCCTATCTATGGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG41457	FBgn0084019	FBtr0111149	3	1	1	76	3L	23453246	23453264	AGATGCGGAAGACTTTGTC		59	23453188	23453208	TAGAGCTTTCAGAATTCCGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14454	FBgn0037177	FBtr0078542	1	1	1	295	3L	22685523	22685541	CACATCTACATCCTCGACG		59	22685246	22685264	CCACTTATCCCTGAAGCTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7407	FBgn0037134	FBtr0078440	2	1	1	84	3L	21816954	21816972	TGAGCTAATCGAGGAACAG		58	21817020	21817038	CATCTTATGCTGGAGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32436	FBgn0052436	FBtr0078343	1	1	1	83	3L	21343555	21343661	CGTTTGCAGTACTATTATCGG		58	21343706	21343724	GAAATCGGGATTCAAACGA		58	NA	
Drosophila melanogaster	50	CG4074	FBgn0037017	FBtr0078280	2	1	1	60	3L	20762322	20762342	CGATGCTTTCTATAACTCGGT		59	20762282	20762302	AGATAACTCCAGGCTATTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32210	FBgn0052210	FBtr0074974	1	1	1	81	3L	19543183	19543202	GATCGTGTTTGAAATCCTGC		59	19543063	19543140	TTGTGGAAGCTTCATGAGAG		59	NA	
Drosophila melanogaster	50	CG6841	FBgn0036828	FBtr0075068	3	1	1	120	3L	18901204	18901222	GGATGCTCTCAAGAAATGC		58	18901306	18901397	ATCGATCTTGACAGTTCGA		58	NA	
Drosophila melanogaster	50	CG4174	FBgn0036793	FBtr0100566,FBtr0100567,FBtr0075111	2	3	3	67	3L	18594403	18594421	AAACTTTGGAACTACCCGA		58	18594292	18594372	AAATAGTGACCAAGTCCCT		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	mRpS26	FBgn0036774	FBtr0075121	2	1	1	87	3L	18100362	18100383	TCCAAGAACTATATCACTAGGG		58	18100431	18100449	TATCGATGGCGAAATTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3764	FBgn0036684	FBtr0075297	3	1	1	81	3L	16988830	16988848	ATGTCTCAGCTAGTGTCCA		59	16988706	16988785	ACGACAAACACTCATAGGC		59	NA	
Drosophila melanogaster	50	Su(P)	FBgn0004465	FBtr0075359	1	1	1	99	3L	16604062	16604080	AAGTCTGGCTGATCTATCG		58	16603919	16603999	AAACCATTTACCGATGCTG		58	NA	
Drosophila melanogaster	50	DNApol-delta	FBgn0012066	FBtr0075522	2	1	1	60	3L	15979984	15980003	AATAAGGAACAGTCACAGCA		59	15979943	15979961	CACGTCTACTTCAATCTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eig71Ek	FBgn0014851	FBtr0075575	1	1	1	119	3L	15654551	15654572	GAATAGGACGATTTGATGAGAC		58	15654652	15654726	AAATCAGAAGACAGGTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7255	FBgn0036493	FBtr0110881,FBtr0100360	3	2	3	145	3L	15301806	15301827	GCTCGTCGTAGATTATTTAGAG		58	15301932	15302036	AGAAATACGGGTATACCCAC		58	NA	
Drosophila melanogaster	50	CG13457	FBgn0036482	FBtr0075654,FBtr0075653	3	2	2	78	3L	15121464	15121483	GATTATACGGGACCTAGCTC		58	15121300	15121318	CATCATCGTAGGTGGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7257	FBgn0036224	FBtr0076040	3	1	1	113	3L	11935816	11935906	TTGAAGGTCGTTTCCTCTG		59	11935980	11936001	GTCCATGAATATGATACATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7551	FBgn0036161	FBtr0076176	3	1	1	60	3L	11452199	11452217	CGATAACAACCTGGATGAC		57	11452240	11452259	AGAGAATACGGCATAGTCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32063	FBgn0045770	FBtr0076286,FBtr0076287	1	2	2	60	3L	10460033	10460054	CCCGATCATTACAAAGTATTGG		59	10460073	10460093	TCGGCATAGTCCATATTATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32053	FBgn0052053	FBtr0076315	1	1	1	165	3L	10084474	10084627	CATTAATGGAGTTCTGTTCGC		59	10084329	10084347	TAGAACACCGACAGTTCAC		59	NA	
Drosophila melanogaster	50	CG4452	FBgn0035981	FBtr0089493,FBtr0089494,FBtr0089495	2	3	3	184	3L	9361223	9361241	AAGTGCGAACATTATCTGG		57	9362075	9362093	CTTGGACATCGGTATACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Lcp65Aa	FBgn0020645	FBtr0076995	1	1	1	78	3L	6144435	6144453	GAAATCCATCCTTGTGCTC		58	6144495	6144513	GTCAACAATCTCTGCATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sucb	FBgn0029118	FBtr0077135	1	1	2	243	3L	5556489	5556604	ATCGTTCATAAGGTTCCCG		59	5556183	5556201	ACTTGGTGGTGATATGGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10671	FBgn0035586	FBtr0077178,FBtr0077177	2	2	2	60	3L	5138607	5138628	ACCATATTCTTCAATACGGACC		59	5138568	5138586	AGATCACAAACAGACTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL8	FBgn0024939	FBtr0072924,FBtr0072925	2	2	2	189	3L	2588587	2588605	TAACCATCAGCACATTGGT		59	2588758	2588776	ACCACTACCCAGATCTCAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG3386	FBgn0035152	FBtr0072611	1	1	1	133	3L	681448	681466	CATGGGATTTCTCCTCACC		59	681271	681289	TTTCCGTGTTGAGATCTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6905	FBgn0035136	FBtr0072569	2	1	1	62	3L	360685	360764	GCTATGAGTACTTGCTAGACC		59	360643	360661	GATCATCCATCGTGTCCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7028	FBgn0027587	FBtr0072528	3	1	1	90	3L	209364	209457	ATTTCGATTCACCCAACAC		58	209292	209310	TAATAACCTTCAGCGTCGT		58	NA	
Drosophila melanogaster	50	mri	FBgn0035107	FBtr0072481,FBtr0072480,FBtr0072482	2	3	3	165	3L	201608	201626	ATCTACAGCTATGTGCAGC		59	201755	201831	GAATCGGATTTCCACTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	snoRNA:Psi18S-1347c	FBgn0086600	FBtr0091610	1	1	1	90	2R	14030730	14030751	GACTAAGATTCATAGTTGCCAG		58	14030802	14030820	TCTTCAACTTCTGCACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-1347a	FBgn0083054	FBtr0113513	3	1	1	60	2R	14030353	14030374	GACTAAGATTCAATGTTGCCAG		59	14030393	14030413	ATAGATCAGCCATCTACATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR14499	FBgn0034317	FBtr0086751	3	1	1	60	2R	14075374	14075393	AAGAACTTCTTCGGATCGTC		59	14075415	14075434	ATTGCTAAAGCTCAGAAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33443	FBgn0053443	FBtr0086435	1	1	1	61	2R	15620526	15620544	AATACATCGGTTCTCGTCC		59	15620483	15620501	TATAAGTACTAACCGCGCC		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33447	FBgn0053447	FBtr0086439	1	1	1	62	2R	15619009	15619027	AATACATCGGTTCTCGTCC		59	15618965	15618983	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR30370	FBgn0063356	FBtr0088797	3	1	1	111	2R	4153736	4153811	ACGTTCTGATATGAGAGCT		57	4153885	4153904	TAAATGACATAGCCTTGCTC		57	NA	
Drosophila melanogaster	50	uzip	FBgn0004055	FBtr0072397	3	1	1	107	2R	20915916	20915934	TTTAGTCGAAACAGAGCCC		59	20916004	20916080	TCAAGCTTCCTAGTAACCAG		58	NA	
Drosophila melanogaster	50	CG30412	FBgn0050412	FBtr0072044,FBtr0072043	2	2	2	73	2R	19206418	19206436	TTTACGGACTTCGTAAGGC		59	19206363	19206382	ATCTGCTTGAAACCCATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30195	FBgn0050195	FBtr0071931	1	1	1	60	2R	18534327	18534345	TATGACCCTGAAGACACGA		59	18534285	18534303	TTTCTCCCTGGATTTCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gom	FBgn0029084	FBtr0071766	1	1	1	92	2R	18028018	18028036	AAGAACAGCCGCTATAACC		59	18028092	18028159	TAGACAGAGGACACCTGAC		59	NA	
Drosophila melanogaster	50	CG11475	FBgn0034687	FBtr0071803	2	1	1	60	2R	17957786	17957805	TTCCATGTGAAGGCTATACC		59	17957745	17957763	GCCAGTTAAAGTCCTTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hbn	FBgn0008636	FBtr0071556	2	1	1	125	2R	16845887	16846055	TAAAGTTCGAAGATCTCGCA		59	16845781	16845799	CTCAAATCCAATCGCATGG		59	NA	
Drosophila melanogaster	50	CG9235	FBgn0034560	FBtr0071517	3	1	1	61	2R	16798008	16798027	CCACTTAGCTACCTCATGTC		59	16798049	16798069	GTTAGGGATCCATTGTAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33454	FBgn0053454	FBtr0086565	3	1	1	174	2R	15138877	15138896	ATTTCAGATGCTGAAGAGGG		59	15138661	15138740	GTTAAGTACCACCGTACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15096	FBgn0034394	FBtr0086633,FBtr0086632	2	2	2	112	2R	14697626	14697644	TATTCTTTGCCCTTACGGT		58	14697466	14697550	CGACCAATTATACTCGGGA		58	NA	
Drosophila melanogaster	50	CG10911	FBgn0034295	FBtr0086808	1	1	1	60	2R	13941271	13941289	TTGGAAACAGCTAGTCAGG		59	13941229	13941247	CATCTCGTTCTTCCTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6522	FBgn0034223	FBtr0086954	1	1	1	170	2R	13354509	13354589	TCTGGCAAGAATTCCACTC		59	13354357	13354375	GAAGAAGTAGACCAGGTCG		59	NA	
Drosophila melanogaster	50	CG9646	FBgn0034184	FBtr0086974	2	1	1	91	2R	12937673	12937749	AATTTGAGACTGAGGTGGAG		59	12937803	12937821	GAGATAAACCGTCTCCTCC		58	NA	
Drosophila melanogaster	50	CG6426	FBgn0034162	FBtr0087042	1	1	1	248	2R	12757095	12758780	ATTCAAGCTCAGGATAAGC		57	12759061	12759080	CTTGGTCATGTAATTCTGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	spin	FBgn0086676	FBtr0089593,FBtr0089589,FBtr0089592,FBtr0089590,FBtr0089591	1	5	5	95	2R	12019320	12019339	TTATCTCGGATCTGTTCGTG		59	12019397	12019824	CCACAATGTATCCCAGACC		59	NA	
Drosophila melanogaster	50	Cdk5	FBgn0013762	FBtr0087350	1	1	1	161	2R	11458514	11458532	ACTCGGACAAGAAACTCAC		59	11458211	11458389	GATGCAGGACATTATGGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12963	FBgn0034031	FBtr0087337	2	1	4	91	2R	11444237	11444255	CAAGTTGAAGATCGACGAG		58	11444310	11449328	CATTACGATCTTCCATGGC		58	NA	
Drosophila melanogaster	50	eIF2B-gamma	FBgn0034029	FBtr0087336	2	1	1	145	2R	11430956	11431030	CGATTATCTACGAAGGAAGG		57	11431138	11431156	GATCCTCATTCTTGGTGAC		57	NA	
Drosophila melanogaster	50	kn	FBgn0001319	FBtr0112810	1	1	3	99	2R	10681341	10685773	GTTGACCAGAGCAATTTGG		59	10681260	10681278	ATAAGGCGATCACGAAGTG		59	NA	
Drosophila melanogaster	50	CG30480	FBgn0050480	FBtr0087478	2	1	1	60	2R	10564876	10564895	GCCTACAGGTTATATTCCCA		58	10564835	10564856	GACATTCTCGACAATAGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8494	FBgn0033916	FBtr0087535	2	1	1	95	2R	10130374	10130483	GAGCTAAAGGAAACTACAATGC		59	10130539	10130557	GAAATGCAACAGTTCGGTC		59	NA	
Drosophila melanogaster	50	CG13016	FBgn0033899	FBtr0087519	2	1	1	107	2R	10045931	10046006	CTTCTTATTCTATCCTGTGGTC		57	10046073	10046092	GGTAGGTCGTTGATATACAC		57	NA	
Drosophila melanogaster	50	CG16935	FBgn0033883	FBtr0087622	2	1	1	99	2R	9748785	9749141	CATTCAGGGTAAATACCCG		57	9748704	9748722	AAAGCCTTTGACTTTGTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp301a1	FBgn0033753	FBtr0087824	3	1	1	82	2R	8455545	8455566	CCTATTGGAGATACTTTCCCAC		59	8455609	8455684	GTACTTCATGCAGACACCA		59	NA	
Drosophila melanogaster	50	CG30203	FBgn0050203	FBtr0087894	1	1	1	80	2R	8201009	8201029	ATATAAGCAAACAGGAGGTGG		59	8201071	8201179	TAGGATCTACCTCCTGCTG		59	NA	
Drosophila melanogaster	50	CG12367	FBgn0033686	FBtr0087984	2	1	1	131	2R	8039030	8039137	ATTGAACTAATCGAGCACG		57	8039231	8039250	GAACCGCGTAAATATAACGT		58	NA	
Drosophila melanogaster	50	Syx6	FBgn0037084	FBtr0088104,FBtr0088103,FBtr0088102	2	3	3	78	2R	7109104	7109122	AAAGTTGCCAAAGTCTTGC		59	7109317	7109336	ACAATAACAGTCCGGATAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG12134	FBgn0033471	FBtr0088388	2	1	2	187	2R	5859908	5859926	GGAGGAGTCTTTCTGTTGG		59	5860134	5860152	GTAACAATGCCGGATTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Mef2	FBgn0011656	FBtr0088444,FBtr0088443,FBtr0088442,FBtr0088447,FBtr0088445,FBtr0088446	2	6	6	68	2R	5808060	5808078	GTACACCGAGTACAACGAG		59	5807239	5808028	TTCTTGTTCTCCTTCTCGA		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Uba1	FBgn0023143	FBtr0088499	2	1	1	95	2R	5577416	5577497	ATTCCATCAAGAAAGCTCTG		57	5577340	5577360	GGTTAACATATTGATCCTCCC		57	NA	
Drosophila melanogaster	50	CG1941	FBgn0033214	FBtr0088927	1	1	1	80	2R	3599167	3599251	GCATTGTCCAAGTTGTTGG		59	3599292	3599313	TGTGTATCTTATCCACATAGGC		59	NA	
Drosophila melanogaster	50	gus	FBgn0026238	FBtr0089753	1	1	6	137	2R	1009144	1009285	ATGTCTATGTATAAGGGTGGTC		58	1009028	1009046	AAGACGTTCAAACTCCCTC		59	NA	
Drosophila melanogaster	50	CG40282	FBgn0039979	FBtr0111272	2	1	1	171	2R	618641	618659	AATCAAGCGAATCAGAACG		58	618488	618506	GACCACTTCCCTGAATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17715	FBgn0041004	FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246	3	6	6	148	2L	22742091	22742164	ATAATGATCATGGCGGGTG		59	22742275	22742294	AATATCTGGCACCCATTCTC		59	NA	
Drosophila melanogaster	50	Acon	FBgn0010100	FBtr0081473,FBtr0112855	1	2	2	95	2L	21172390	21172469	TACGATAAGATCCAGCCCA		59	21172528	21172546	GTCGCCATTCTTGATTTCG		59	NA	
Drosophila melanogaster	50	CG12617	FBgn0040996	FBtr0081351	2	1	1	60	2L	20294906	20294925	CAAACATCTGAACGAGATGG		58	20294947	20294966	AATATAGTTCCGACCCATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10165	FBgn0032801	FBtr0081278,FBtr0081277	2	2	2	109	2L	19528164	19528182	TTCTGATCTTTCTGGTGGC		59	19527939	19528092	GATAAGGACGTGGAATCCAG		59	NA	
Drosophila melanogaster	50	CG10495	FBgn0032750	FBtr0081150	3	1	1	100	2L	19063469	19063548	ATGGTGCGCTATAGTAAGC		59	19063610	19063630	CTGTTGTTAATGGAGTCTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10600	FBgn0032717	FBtr0081120	3	1	1	122	2L	18838602	18838620	CTCCAAATCCTCCAAGGAG		59	18838148	18838516	GAGGAAGGAATCTTCTCCC		58	NA	
Drosophila melanogaster	50	CG10333	FBgn0032690	FBtr0081072	3	1	1	60	2L	18608207	18608225	CATTATCGACAAAGTGGGC		58	18608249	18608267	AATGGGTATAGCTTGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31742	FBgn0051742	FBtr0081025	3	1	1	60	2L	17991185	17991204	TGCAGTATATCATGCTACCA		58	17991226	17991245	GTGATATAGTCTCACCACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5110	FBgn0032642	FBtr0080983	3	1	1	60	2L	17481471	17481491	CGTTATTCAGATTACGGATCG		58	17481513	17481531	GTTCTTCTCCTGGCTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr36c	FBgn0045485	FBtr0080964	1	1	1	94	2L	17181338	17181356	ACGTACAGGATGACTACTG		58	17181414	17181488	GTTCTCAAAGGCTTCTTCG		58	NA	
Drosophila melanogaster	50	CG8942	FBgn0028545	FBtr0080615	2	1	1	110	2L	13975875	13976491	TATACAGACGAAGAGACTGC		58	13975784	13975802	TTGAGGACACTGTTGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sop2	FBgn0001961	FBtr0080570,FBtr0080569	3	2	2	60	2L	13828455	13828473	GATAAGTCGCAGAAGAAGG		57	13828413	13828432	CCATCGACTGAAAGATTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9306	FBgn0032511	FBtr0080472	1	1	1	74	2L	13370420	13370438	AGAAGGAGTTTGTGACCTG		59	13370364	13370382	AAGATTAGTGGTGTCCCAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG5204	FBgn0032473	FBtr0080433	1	1	1	81	2L	13162316	13162334	CTGATCTCAGTTATTGCGG		57	13162436	13162454	AAATCTTCGGGTTCCTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Vha68-2	FBgn0020367	FBtr0080419,FBtr0080420,FBtr0080418	2	3	3	103	2L	12977895	12977980	TCCATGAAGTTCAAGGACC		59	12978047	12978065	TCCTCCAGATTTCTGAAGG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Elf	FBgn0020443	FBtr0080369	1	1	1	80	2L	12439161	12439179	ATCAATTATCTGTGCGGGT		59	12439223	12439306	CAGATGAGGGCCTTAACTG		59	NA	
Drosophila melanogaster	50	CG17211	FBgn0032414	FBtr0080336	2	1	1	109	2L	12125889	12125969	TACTGCTATTGCATAGGTGG		59	12126041	12126059	TATCTTACGGGACAACAGG		58	NA	
Drosophila melanogaster	50	Patsas	FBgn0029137	FBtr0080363,FBtr0080362	2	2	2	60	2L	12101695	12101713	TACTTTGACCACCACTGTC		59	12101653	12101671	ACCACATTCTGTTCCTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33305	FBgn0032351	FBtr0080221	2	1	1	60	2L	11159713	11159882	CATGTCCAGACCTTTAGGTC		59	11159672	11159690	CACGGGTGCTCTATTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	aub	FBgn0000146	FBtr0112793,FBtr0080165	2	2	2	83	2L	10999440	10999525	GACTTTAGGACGTTGAGGG		59	10999375	10999393	CTTGTTGAACATGCGAAGG		59	NA	
Drosophila melanogaster	50	CG17124	FBgn0032297	FBtr0080118,FBtr0080117	2	2	2	98	2L	10745672	10745690	ACATCGACGAGATACTGGA		59	10745529	10745547	TCGATATGTCTGATTGCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sur	FBgn0028675	FBtr0079963	2	1	1	80	2L	10194421	10194439	TGCATTGTGATAATGACGC		58	10194305	10194379	GGTATATCCCGCTATAACCTC		59	NA	
Drosophila melanogaster	50	CG14535	FBgn0031955	FBtr0079564	2	1	1	119	2L	7847887	7847905	GCACATCCTCTATCAGCTC		59	7847646	7847805	CAGCTGATCAAATTGTTGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Ucp4C	FBgn0031757	FBtr0079172	3	1	1	61	2L	5968951	5968969	GAGTGGAGGGATTCAAGTC		59	5968994	5969012	GATAAAGTTTCGGGTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF-3p40	FBgn0022023	FBtr0079031,FBtr0079030	3	2	2	174	2L	5051568	5051652	CTTCAAGCAGGATACGGAG		59	5051412	5051430	GGTATTGATCTGGCCAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	BG642163	FBgn0083938	FBtr0110769	1	1	1	63	2L	4641341	4641359	TATTATCAGTGGTGCAAGC		57	4641386	4641462	TGGGAAGTTGTTCTTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dp	FBgn0053196	FBtr0089286	1	1	1	80	2L	4500453	4500474	CTTACCAACTTGTCATTGTCAG		59	4500330	4500412	TTAAGGACAGGTTTCTCGG		58	NA	
Drosophila melanogaster	50	CG2862	FBgn0031459	FBtr0077718,FBtr0077719	3	2	2	67	2L	2770391	2770468	GGATGATAAATGCGTTGCC		59	2770499	2770517	GAGGAATCACGAGGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9867	FBgn0031421	FBtr0077767	3	1	1	159	2L	2382548	2382622	TTTCCTATGAAAGGCTCCC		58	2382744	2382763	TTGTAGCAATTCGGATCCTC		59	NA	
Drosophila melanogaster	50	CG17012	FBgn0031406	FBtr0077804	3	1	1	62	2L	2254478	2254497	GTGTTCAATGAGGACATCTG		58	2254435	2254453	ACCGGAATCTCCATAACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12674	FBgn0031388	FBtr0077827	3	1	1	121	2L	2080948	2080966	GTGAGGGTTACATACTCCG		59	2081049	2081134	CTTCAGCAGAAACTTGTTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Plap	FBgn0024314	FBtr0077980	2	1	1	68	2L	1168709	1168728	TTAATGAGGAGATTGGTGGC		59	1168604	1168622	TTCCATTGGACAGAAGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	S	FBgn0003310	FBtr0077993,FBtr0077994	1	2	2	111	2L	1052484	1052575	TCCCAAAGAGATTACCATACAC		59	1052394	1052412	CATGATTGTGTAGAGCGGA		59	NA	
Drosophila melanogaster	50	Ent1	FBgn0031250	FBtr0078095	3	1	2	81	2L	357475	357493	CCTACCTCGTGTTCTACCT		59	357181	357431	TACTTCCAGTAATCTTCCGC		59	NA	
Drosophila melanogaster	50	mt:tRNA:P	FBgn0013702	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG6361	FBgn0030925	FBtr0074630,FBtr0113000	1	2	2	254	X	18374512	18374587	ATGAATGTGACCAATCGTG		58	18374276	18374294	GATTACGCCTACGATCGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Dhc16F	FBgn0013809	FBtr0074509	2	1	1	80	X	17959720	17959795	AAGACGATATTTCGAGCCT		58	17959837	17959857	CGATGGATAGTAGTTGACCTC		59	NA	
Drosophila melanogaster	50	r	FBgn0003189	FBtr0089734	1	1	2	161	X	16554458	16554476	TTCCAGATACCCAAGAACG		58	16554665	16559229	GGATTCCACATTAACTCCGT		59	NA	
Drosophila melanogaster	50	CG12507	FBgn0030729	FBtr0074248	3	1	1	60	X	16160071	16160089	TACGATCCCTATATTCGCC		58	16159829	16159850	GTGGATAGTTCCTATGGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15028	FBgn0030618	FBtr0112985	3	1	2	60	X	15075467	15075487	TCTATGGGCCTCATTATTGTC		59	15075508	15075527	TAGCGCAGTACATAGATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CkIIbeta	FBgn0000259	FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559	1	5	6	162	X	11689033	11689147	TGTTCCAAGGCTATATGGA		57	11689687	11689705	TTGTATTCGTGCGTATGTG		58	NA	InUTR
Drosophila melanogaster	50	Kap3	FBgn0028421	FBtr0112931,FBtr0112934,FBtr0112933,FBtr0112932,FBtr0073459	1	5	5	80	X	11231087	11231171	GTGCAATATAAGATTGGATCGC		59	11231028	11231048	CAGCTCATTTCTCATTGTCTC		59	NA	
Drosophila melanogaster	50	CBP	FBgn0026144	FBtr0071053,FBtr0071052	2	2	2	118	X	7235526	7235614	ACTTGTTTAAGGCTGTGGA		59	7235696	7235714	TATCACAGCGAATGAAACG		58	NA	
Drosophila melanogaster	50	RpL36	FBgn0002579	FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156	2	4	4	115	X	522710	522793	CTTGAAGAACATCCAAACCC		59	522614	522632	TATCCTTGGACACCTTCAG		58	NA	
Drosophila melanogaster	50	woc	FBgn0010328	FBtr0112857,FBtr0085178	3	2	2	86	3R	23083857	23083875	GTACTACGAGCGGTTTACC		59	23083725	23083807	CGAGTGACAATGTATTGCG		59	NA	
Drosophila melanogaster	50	eIF-3p66	FBgn0040227	FBtr0089622	2	1	1	85	3R	19507221	19507315	GAAGCGATATTGTCCTGGT		59	19507363	19507382	CTTGATAGTCATGAACTGCG		58	NA	
Drosophila melanogaster	50	SIFR	FBgn0038880	FBtr0084098,FBtr0084099	2	2	2	84	3R	17109851	17109870	TTTGTGCCCTACATACAAGG		59	17106315	17109804	AGATGGCAATGAACCTGTC		59	NA	
Drosophila melanogaster	50	CG5840	FBgn0038516	FBtr0083454,FBtr0083455	1	2	2	280	3R	13362217	13362236	TATTCGTGATGATTGAGGCC		59	13362551	13362569	CTACTTCGTCTTTCCCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CREG	FBgn0025456	FBtr0089895,FBtr0089896,FBtr0089897	1	3	3	60	3R	13219713	13219732	GATGCTAATAACAGGTCCAC		58	13219672	13219690	CAGTGAAGTCCAAATCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204	1	6	8	163	3R	11782022	11785052	GACTGATGAGGAACAATGG		57	11785179	11785197	TTGATATTGTCGGTTCGTC		57	NA	
Drosophila melanogaster	50	Neu3	FBgn0051314	FBtr0100189,FBtr0082973	2	2	2	83	3R	10496557	10497104	TATCTGCTTAAGCAGGCAG		59	10496492	10496510	GTAGTCGTGACTATGGTCG		59	NA	
Drosophila melanogaster	50	trx	FBgn0003862	FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949	2	5	5	82	3R	10091189	10091209	TATGTTGGAGTCTTCAGATCC		58	10091050	10091145	TCGATAACCATTTCACCCG		59	NA	
Drosophila melanogaster	50	RpL3	FBgn0020910	FBtr0082350	2	1	5	182	3R	7048285	7048303	ATCAACAAGAAGGAGGTGG		59	7048449	7048825	CAAGCTGATCGAAGAACAG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG6208	FBgn0037789	FBtr0082195	2	1	1	61	3R	5946455	5946476	CAAGAAGACCTTCAAGAAATGG		59	5946415	5946434	TTTGTAATGTGTTCACCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9461	FBgn0037760	FBtr0082155	2	1	1	83	3R	5632008	5632027	CATTTATGTGCACGAGAACG		59	5631881	5631962	GAGGTTATCCAGACACCTG		59	NA	
Drosophila melanogaster	50	CG1103	FBgn0037235	FBtr0078909,FBtr0111220	3	2	2	61	3R	164767	164786	GTATACCTTTGTTCGGACAG		57	164810	164828	AGGTAGTAAGTAGCCAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)04053	FBgn0010830	FBtr0078535	2	1	1	107	3L	22732305	22732382	CAGAATCTGAGGCAATTGC		59	22732216	22732234	GTACAGATCGGGACTTCTG		59	NA	
Drosophila melanogaster	50	Mkrn1	FBgn0029152	FBtr0078383,FBtr0078384	3	2	2	90	3L	21524869	21524890	CAGAGCCAGAATGAAATAATCG		59	21524616	21524634	TTGAAATCATCTCCAGCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4365	FBgn0037024	FBtr0078254,FBtr0078253,FBtr0078252	3	3	3	67	3L	20792308	20792326	GGCATGGAGATCAAGATCC		59	20792356	20792375	GTCTTCGTGTCTACAATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7730	FBgn0036689	FBtr0089584	3	1	1	82	3L	17021741	17021760	GATAAATGGTGCCTCAATGG		58	17021805	17021881	GGTCATCTCCATGTTTCGA		59	NA	
Drosophila melanogaster	50	CG10006	FBgn0036461	FBtr0075628,FBtr0113171	1	2	2	84	3L	14989470	14989489	GATAATGGAGTTTGCAAGCA		58	14989536	14989611	CATAGATCCAAGCGTACCA		58	NA	
Drosophila melanogaster	50	CG10971	FBgn0036309	FBtr0075948,FBtr0075949	2	2	2	99	3L	12763428	12763502	CATTACAGCAAACCCAGGA		59	12763347	12763365	TCAGTAAGCGAGAGTTTGC		59	NA	
Drosophila melanogaster	50	Ard1	FBgn0036064	FBtr0076349,FBtr0076352,FBtr0076351,FBtr0076350,FBtr0076348	1	5	5	60	3L	9966736	9966754	CTGAACCTCTACACCAACG		59	9966778	9966796	CATAGTACTTGGGCTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3689	FBgn0035987	FBtr0110863	2	1	2	152	3L	9404946	9404964	GGAGTGGATTGTTGAGGAC		59	9405080	9406318	GGTACAGCAAATAGTGCCT		59	NA	
Drosophila melanogaster	50	CG32351	FBgn0052351	FBtr0076639	2	1	1	106	3L	8614807	8614881	GATGCATATTGATGCCACC		59	8614949	8614969	CAATAAACTCGATGAGTGTCC		58	NA	
Drosophila melanogaster	50	CG33275	FBgn0035802	FBtr0089849,FBtr0089850	2	2	3	92	3L	7612959	7613370	GTCTATTTACCAGGCACAC		57	7613426	7613444	TTCATAGCAATTGATGCCG		58	NA	
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713	1	5	8	94	3L	5692112	5697030	GTTCCTTCGCAAGATTTCG		59	5697088	5697106	TATATGGTGACGCCATGAC		59	NA	
Drosophila melanogaster	50	Sucb	FBgn0029118	FBtr0077134	1	1	2	131	3L	5555965	5556196	TATCACCACCAACAAGAGC		59	5555852	5555870	GTGATGTTGATACTGCGTG		58	NA	
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133	1	5	11	192	3L	3578467	3593333	TTGCAGATATGGAGACTGG		58	3593488	3593507	CTGTTTGTTCAGAAAGACCT		57	NA	
Drosophila melanogaster	50	mu2	FBgn0002872	FBtr0072857	1	1	2	119	3L	1945528	1945665	GTGTCAAAGTTGCATCAGG		59	1945372	1945448	TCTGACAGATCTTCTGATAGTG		58	NA	
Drosophila melanogaster	50	Aprt	FBgn0000109	FBtr0089421,FBtr0089420	2	2	2	80	3L	1884244	1884337	CTGGAGTACGGTATTGACAC		59	1884183	1884201	TAGATCGTCAACGACAACG		59	NA	
Drosophila melanogaster	50	n-syb	FBgn0013342	FBtr0072818	1	1	5	220	3L	1632434	1633718	TATAAACTTGGACTCATAGGCG		59	1632235	1632253	TCGAGAAACTTTCGTCCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG9153	FBgn0035207	FBtr0072671,FBtr0072670	1	2	2	83	3L	1317542	1317560	AATGAGGATTACGACTGGC		59	1317604	1317680	CCATTTGATTGTATCATCGACC		59	NA	
Drosophila melanogaster	50	CG17090	FBgn0035142	FBtr0072552,FBtr0072551	3	2	2	111	3L	571964	572090	CTCTAGCAACATTGTGAATGG		59	572163	572181	GCAGTTGCTTACAATGTGG		59	NA	
Drosophila melanogaster	50	ken	FBgn0011236	FBtr0072129	1	1	1	86	2R	19762609	19762683	GTTGATAAGGAACCTGCTG		58	19762732	19762751	TTAAAGTAGGTGGCATTCAC		57	NA	
Drosophila melanogaster	50	CG3215	FBgn0034825	FBtr0071974	2	1	1	88	2R	19016939	19016957	GACATATTCAAGTCGCCCA		59	19016810	19016889	GCAATGATGTTCCTTAGAGTG		59	NA	
Drosophila melanogaster	50	Nup214	FBgn0010660	FBtr0071996	2	1	1	80	2R	18809966	18809984	CTTAATGAGGCCTATGCCA		59	18809847	18809924	CATTAAACGCGTAATCTCTGG		59	NA	
Drosophila melanogaster	50	MED23	FBgn0034795	FBtr0071903	3	1	1	85	2R	18778142	18778212	AAACCACTACGACTTTCTG		57	18778261	18778279	TGAGAATTATGCGGAAGTC		57	NA	
Drosophila melanogaster	50	CG4752	FBgn0034733	FBtr0071832	3	1	1	72	2R	18366727	18366745	CATGTAGACCGCTACTTGG		59	18367283	18367301	TAAAGAGCACATCCACACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	HmgD	FBgn0004362	FBtr0071708,FBtr0071709	1	2	2	201	2R	17603110	17603202	GAAGGACAAGTCTGAGTGG		59	17603367	17603385	CTACTCGCTCTCATCATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG30463	FBgn0050463	FBtr0113380,FBtr0087112	2	2	5	114	2R	12566338	12566356	AAATCTAGGTTATGGCGGT		58	12562745	12566260	CATCCAGTACTGGTTTCCA		58	NA	
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	3	5	7	82	2R	11836642	11836721	TTTGCTACGTGCTACTCTC		59	11836578	11836599	ATCCGCTCTAGTTATATTCGAG		59	NA	
Drosophila melanogaster	50	CG18324	FBgn0033905	FBtr0087523,FBtr0087524	1	2	2	60	2R	10057162	10057181	CATATTTACCGGACCAATGG		58	10057204	10057222	GGTTCAAGCTTGGTAAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sobp	FBgn0033654	FBtr0088064	3	1	1	129	2R	7725502	7725520	CATCCAGTTGAAATGTCCG		58	7717932	7725409	GCGCGAATTCCTTTATCTC		59	NA	Nonspecific
Drosophila melanogaster	50	dap	FBgn0010316	FBtr0088470,FBtr0088469	1	2	2	155	2R	5600928	5600946	TCAATTCCTCGCTAGAGTC		58	5601064	5602430	GCTCCTTCATGAATTCTGTG		58	NA	
Drosophila melanogaster	50	CG30338	FBgn0050338	FBtr0088533	3	1	1	61	2R	5486211	5486232	GGCTGATTTCAATGAGTTTCTC		59	5486254	5486272	GGGATAGAAGGCTAGTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vang	FBgn0015838	FBtr0088566	1	1	1	60	2R	4992157	4992175	ACTACTACGTGGATTTCCC		58	4992199	4992217	GAGACCGATATTGGGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp4e2	FBgn0014469	FBtr0088745	2	1	1	92	2R	4333306	4333324	GATGTCATTTGCGACACAG		59	4333379	4333456	GTAGCACATGTCTTTGAAGG		58	NA	
Drosophila melanogaster	50	CG11191	FBgn0033249	FBtr0088868	3	1	1	231	2R	3889123	3889141	GATGTGAACAGCAACTGTC		59	3888910	3888929	CATTCGCCTTGTATTTCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gapdh1	FBgn0001091	FBtr0100479,FBtr0088903	2	2	2	61	2R	3679690	3679708	GCTAATCTCGTGGTACGAC		59	3679647	3679665	ACTTGATCAGGTCGATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3271	FBgn0033088	FBtr0086118,FBtr0086119	2	2	2	101	2R	2561682	2561770	ACATATTCGCAGTGACGAG		59	2561835	2561853	AATAGGCAAAGGCGTAGTC		59	NA	
Drosophila melanogaster	50	CG10949	FBgn0032858	FBtr0081367	1	1	1	60	2L	20416031	20416049	GCAGTCATCAGATCAACCA		59	20415989	20416010	AAGAGAAGGTCGTTAAAGTACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13077	FBgn0032810	FBtr0081257	1	1	1	289	2L	19566373	19566391	ATTTCCTATCTCACGCTGC		59	19566995	19567013	AGAATGCACAGTACGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CLIP-190	FBgn0020503	FBtr0080978	1	1	6	124	2L	17386352	17386371	GTACCCACATTCAAATGGGA		59	17394490	17398616	GACAGTCTCTTGATAGAGATCTG		59	NA	
Drosophila melanogaster	50	CSN1a	FBgn0028838	FBtr0080671	3	1	1	62	2L	14763559	14763577	GATATACAAGTCTGCTGCC		57	14763603	14763621	TTATCGTAGTCGTAACGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pect	FBgn0032482	FBtr0080440	3	1	4	196	2L	13208768	13209501	GAGAAAGAAGATTCGGCAG		58	13209720	13209739	TAGTCACCCAGTTTCTTAGC		59	NA	
Drosophila melanogaster	50	CG31760	FBgn0051760	FBtr0080338	2	1	1	95	2L	12168287	12168305	TAACAGCATCATTCTCGCT		59	12168364	12168440	TCTGGACTTGTTCCTTGAG		58	NA	
Drosophila melanogaster	50	salr	FBgn0000287	FBtr0080235,FBtr0080236	2	2	2	120	2L	11372324	11372342	GAACTTCAGTTCGAGTTCC		58	11372425	11372533	CATATGGACCTTGAGATTCC		57	NA	
Drosophila melanogaster	50	Bka	FBgn0010520	FBtr0079874	1	1	1	60	2L	9895478	9895496	GTAATGCACAGCTTAAACG		57	9895520	9895538	CGAATCTGATCCTTAAGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13101	FBgn0032084	FBtr0079783,FBtr0079784	1	2	2	82	2L	8978779	8978870	CCAGAATATGCGGATAAACTG		58	8978717	8978737	AGAGATATGATGTGCATACCC		59	NA	
Drosophila melanogaster	50	RpL36A	FBgn0031980	FBtr0079546	3	1	1	153	2L	8042125	8042457	CCCATCTTCAGGAAGAAGG		59	8041990	8042008	AGAACTGGATCATCTGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Wnt6	FBgn0031902	FBtr0079434	1	1	1	250	2L	7343047	7351187	AATCTTAATGCGCGATTCC		58	7351401	7351419	GACTGGGATGTTGATCCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7337	FBgn0031374	FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012	3	5	5	130	2L	1937464	1937482	CACAATACGGAGAATGGGA		59	1937576	1938518	CTATGGCCTACATTCTCCA		58	NA	
Drosophila melanogaster	50	capt	FBgn0028388	FBtr0100022,FBtr0100023	2	2	2	103	2L	1152249	1152267	GTATCTGTCCAAGGACTCG		59	1152103	1152183	AAGCCAACTCGGTATAATCG		59	NA	
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	2	7	8	166	2L	119224	119295	TAATGCAGACTGATGTCCTG		59	119020	119038	TTGAGCCATGGTGTTTAGG		59	NA	
Drosophila melanogaster	50	l(2)gl	FBgn0002121	FBtr0078171,FBtr0078170	1	2	6	135	2L	15703	17062	TTATCGTAAGACGGCACAG		59	15586	15604	GTACAATTCAACTCCGGGT		59	NA	
Drosophila melanogaster	50	CG9921	FBgn0030743	FBtr0074235	3	1	1	124	X	16225854	16225872	AAGATCAAGGAGAATCCGC		59	16225665	16225684	ATACGACTTCGCATCATCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	sog	FBgn0003463	FBtr0074063	3	1	1	165	X	15501831	15502017	CAACATGAAACATTACGCTG		58	15501685	15501703	CGATGAGGTGTAGAAGGAG		58	NA	
Drosophila melanogaster	50	CG9213	FBgn0030655	FBtr0074071	1	1	1	107	X	15466547	15466565	GATTTCCGGCTAACTTTGC		59	15466394	15466412	ATTTCACCTTTCCGATGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12608	FBgn0030630	FBtr0074018	3	1	1	255	X	15237888	15237906	GAGAACGCTCATGTTATGC		58	15237498	15237516	TTTCCATGTCGATCTTCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	lwf	FBgn0086221	FBtr0100009	1	1	1	80	X	15030456	15030476	CCGTGTTCTTCTTTAATGTCG		59	15030516	15030607	CGTTGGTATCGAGAATTATCG		58	NA	
Drosophila melanogaster	50	CG12116	FBgn0030041	FBtr0071240	1	1	1	60	X	8362496	8362515	TAATTTCATGGCGGATAAGG		57	8362455	8362474	CTCGTTGTGAAGGATTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15771	FBgn0029801	FBtr0070809,FBtr0070810	1	2	2	146	X	5652317	5652335	CTTTCTCAATGTCAAGCCG		59	5652502	5652520	ACATCCTCTAGCGATTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	snoRNA:Psi28S-2442a	FBgn0082989	FBtr0113582	2	1	1	62	3R	1424438	1424456	TCGGTGTCAAGAATATGCA		58	1424394	1424415	GTGTTTAGGACAAACCAAAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18754	FBgn0042106	FBtr0084439	1	1	1	283	3R	19510412	19510905	ATCGGCTATCCTTGATTCG		59	19511216	19511235	CAATAGACAAATGGGTTGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	PSR	FBgn0038948	FBtr0084239	3	1	1	64	3R	18187712	18187730	CAAGAAGTATCGCAACCAG		58	18187666	18187684	TCATCTTGACGCTATAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AnnIX	FBgn0000083	FBtr0089517,FBtr0089520,FBtr0089518,FBtr0089519	2	4	4	243	3R	16893207	16893794	TACTACCCATTCAAGTGCA		58	16894001	16894019	TAACATCCTCGAATTTGCC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	DNaseII	FBgn0000477	FBtr0083538	1	1	1	92	3R	13845224	13845801	AAACGATGTAGATTGGTGG		57	13845857	13845875	TACAGGTACTTCAAGCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14879	FBgn0038419	FBtr0083325,FBtr0083326	3	2	2	106	3R	12173232	12174503	AATTCTCGGTGAACTTTGTC		58	12173145	12173164	GTTCCGCTTATAATTCTCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33098	FBgn0053098	FBtr0082580,FBtr0082579	3	2	3	123	3R	8213638	8213708	AGCTGAAGGAAGTCTTCTC		58	8213794	8213813	ATCATCTGTTCCAGTAGCTG		59	NA	
Drosophila melanogaster	50	CG3925	FBgn0037780	FBtr0082174	3	1	1	103	3R	5876650	5876739	AGTATTGCAATCCAGAGGG		59	5876806	5876824	CCAGCTAAACTTTGTGGAC		58	NA	
Drosophila melanogaster	50	Paps	FBgn0020389	FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885	3	6	6	94	3L	19853426	19853508	CTAGACAGCATGGAGATCC		58	19853566	19853584	AACTCATCCTTCCTCTTGG		58	NA	
Drosophila melanogaster	50	CSN1b	FBgn0027057	FBtr0075074	3	1	1	60	3L	18897546	18897567	ACCTACAACGTAAATCTCTACC		59	18897507	18897526	TTCCAGCGTTTAGATCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13458	FBgn0036479	FBtr0075637	1	1	1	137	3L	15107474	15107492	TCAGCAATCTTGGAAAGCT		59	15107593	15107932	ACTTGCAGAAATTGCACAG		59	NA	
Drosophila melanogaster	50	CG13476	FBgn0036441	FBtr0075686	1	1	2	90	3L	14698843	14698861	CCAATGTTATGGGCTACGA		59	14698915	14699044	GGATATTGATCCAGGTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11008	FBgn0036315	FBtr0075932	2	1	1	60	3L	12814312	12814330	ATACTCCAACCACAATGCT		58	12814354	12814372	GAATCTCCTTCAACTGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33171	FBgn0053171	FBtr0089838	2	1	2	184	3L	7042022	7042040	GAATCTGCTCAACAGTCCA		59	7043787	7044352	GATTCTGTACCCTGGATGAG		59	NA	
Drosophila melanogaster	50	CG15111	FBgn0034419	FBtr0086581,FBtr0086580	2	2	2	69	2R	15027275	15027293	TATTCCGTAACGTTCCAGC		59	15027389	15027407	TGAGATCAAGTCCTTTGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	nemy	FBgn0033765	FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875	3	6	6	197	2R	8558847	8559072	AAGCGGATGAGGAAATCTG		59	8558668	8558689	GATCTCTGTACGCTTATAGTCC		59	NA	InUTR
Drosophila melanogaster	50	Ret	FBgn0011829	FBtr0081496,FBtr0081494,FBtr0081493,FBtr0081492,FBtr0081495	3	5	5	99	2L	21184210	21184286	GAGTTAAAGTTGGTTCATCGTG		59	21184132	21184150	AAACATCTCGAGTCAGTCC		59	NA	
Drosophila melanogaster	50	CG15142	FBgn0032645	FBtr0080995	2	1	1	60	2L	17498305	17498380	CTATAGGTCTCGATGAGAACG		59	17498265	17498284	AGGACATTGAGTAGATCGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31728	FBgn0051728	FBtr0080453	1	1	1	83	2L	13256739	13256835	TTCGAATTCAGCACTTTGC		59	13256882	13256900	AATTGGTTGGATCTCCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Oscillin	FBgn0031717	FBtr0079102,FBtr0079101	3	2	2	152	2L	5548088	5548173	GATGAGTATGTGGGACTGG		59	5548289	5548307	CTCGAACTTATTGCACTCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG15418	FBgn0031554	FBtr0077556	1	1	1	218	2L	3621584	3621602	ATTGGAGTACGAAAGTGCA		59	3621320	3621402	GCAGGCTATTATCTGTTCG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	tRNA:R:85Cb	FBgn0053551	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me18S-A1494	FBgn0086073	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR32481	FBgn0052481	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:E4:56Fc	FBgn0011850	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CR32658	FBgn0040859	FBtr0073628,FBtr0073626,FBtr0073627	2	3	3	141	X	11985679	11985698	CAATTGCATTAACAAGCCAG		58	11985865	11985883	ACCATAGTAATCCCGTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG41472	FBgn0084032	FBtr0111205	3	1	1	70	X	22035776	22035794	TTCAAACAATCGCAGTCTC		58	22035828	22035846	GAGTCGAGTTGAATCATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1702	FBgn0031117	FBtr0077310	2	1	1	84	X	20339660	20339679	TTCATTATCTTCCGGCTGAG		59	20340068	20340086	TGAAGTCTTCGGTCAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32529	FBgn0052529	FBtr0100839,FBtr0074800,FBtr0074801	2	3	3	81	X	19795510	19795910	GACCGTATATGGAATATCCACC		59	19795952	19795970	ATATGAGGCCCAGTATGGA		59	NA	
Drosophila melanogaster	50	CG12701	FBgn0031071	FBtr0074808,FBtr0074807	1	2	2	60	X	19671582	19671601	CCACATGATAATCAAGAGCG		58	19671541	19671561	TATGCTCTTCTCGATCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32528	FBgn0052528	FBtr0074793	2	1	1	137	X	19640675	19640693	TGAAGAAGGTCCAAGAGGA		59	19640873	19640891	GATCACTGATGGACTGTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rpp20	FBgn0066304	FBtr0091935	1	1	1	60	X	19638564	19638582	GATGGGAAGCAATTATCCC		57	19638606	19638624	TTGTTTGTGGTATTTGGCG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tim9b	FBgn0027358	FBtr0074766,FBtr0074767	1	2	2	93	X	19512304	19512322	CGTGGATAATCTCAGCCAG		59	19512167	19512185	CATATTCTGGTTGAAGCGC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	l(1)G0156	FBgn0027291	FBtr0074780,FBtr0074781	3	2	2	92	X	19413855	19413945	GAACATTATGCGCATGTCC		59	19413781	19413801	AGATACTTCTCTTCGAACTGG		58	NA	
Drosophila melanogaster	50	CG12609	FBgn0030952	FBtr0074606	2	1	2	93	X	18641013	18641032	ATGAACAGCAGTTAGGAGAG		59	18640886	18640904	GTCAAATGGATGGCAAGTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CrebB-17A	FBgn0014467	FBtr0074555,FBtr0074556,FBtr0112879,FBtr0074554,FBtr0074557,FBtr0112877,FBtr0112878	1	7	7	172	X	18267097	18267115	GGAGTCATACAGACAGCAG		59	18267324	18267342	TTACACGGAAAGGTTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	os	FBgn0004956	FBtr0074581,FBtr0112847	2	2	2	81	X	18201073	18201091	ACAACTACAAGTTCCTGCC		59	18200821	18200839	ACGTAAGTTTGCATGTTGC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG32494	FBgn0052494	FBtr0074506	3	1	1	78	X	17894604	17894623	AACAATATTTGTCGCCACAG		59	17894664	17894682	TTTACTGCCTAGTCGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL22	FBgn0030786	FBtr0074330	2	1	1	182	X	16678493	16678511	AAGATGTGGTACATCGCTG		59	16678657	16678789	GAAGGATTCGGCTATCCAC		59	NA	
Drosophila melanogaster	50	mthl1	FBgn0030766	FBtr0074314	3	1	1	63	X	16537079	16537097	GATGTCAAGTCCTCATCGG		59	16537124	16537142	TAACGACGACTAGCTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9911	FBgn0030734	FBtr0074243,FBtr0074241,FBtr0074242	1	3	4	97	X	16190148	16190344	CGATTCTACAGCTACTCCA		58	16189337	16190087	TTCATTAGACGCTAGGGTC		58	NA	
Drosophila melanogaster	50	eas	FBgn0000536	FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211	1	5	5	111	X	16178692	16178711	TCTATGTCCAGGTCAATCAG		58	16178784	16179063	AATGCATAGCCTACGTAGTC		59	NA	
Drosophila melanogaster	50	Stim	FBgn0045073	FBtr0074161	3	1	3	133	X	15831778	15833078	AGAGCATAAGTTCCATGGG		59	15831663	15831681	ATCATCTAGCTGACGATGC		59	NA	
Drosophila melanogaster	50	shtd	FBgn0004391	FBtr0074078,FBtr0074077	3	2	2	80	X	15350326	15350404	CCTATACGATCACGTAACCA		58	15350265	15350283	CGACTCAAATAGGCATCGA		59	NA	
Drosophila melanogaster	50	dah	FBgn0015926	FBtr0074007	2	1	1	60	X	15222963	15222982	TTCTTCTGGAATGTCTACGA		58	15223062	15223080	TCCTGATCTCTAACAGGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	mew	FBgn0004456	FBtr0073731,FBtr0073732	3	2	2	83	X	13109890	13109967	TCACAATAACATAGAGGTGGAG		59	13109828	13109846	ATAATCAGCCACGGTATCG		59	NA	
Drosophila melanogaster	50	CG15720	FBgn0030442	FBtr0110989	1	1	2	90	X	12940965	12940983	CTATCATGAGGAGTGCCTG		59	12941035	12941903	GATCTGGTTCTTGAATCTCCT		59	NA	
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073484	2	1	12	186	X	11289962	11289982	CTGATCATTGGAAAGACACAG		58	11290130	11294832	AAAGCATAAAGGCTGTCGA		59	NA	
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	3	8	9	95	X	10692567	10692660	GAATAAGGGTGAAATTTGCC		57	10692491	10692509	TGCATGATCCGTTTAATGG		58	NA	
Drosophila melanogaster	50	RpS28b	FBgn0030136	FBtr0071360	1	1	1	126	X	9448742	9448760	CATGGACAAACCAGTTGTG		59	9448850	9448868	CACGTTTCGGATAATCTGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Obp8a	FBgn0030103	FBtr0071307	1	1	1	260	X	9109373	9109391	ATCTCCATTGCTTCTGGTC		59	9109615	9109633	TGATGACATCGGACATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12118	FBgn0030101	FBtr0071340,FBtr0071339	2	2	2	125	X	9089595	9089613	GAAGGAGACATCGAAATGG		57	9089159	9089177	TAGAAAGAATGGACGTCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274	2	10	10	164	X	8768354	8768372	GGATGAGAACGAGAACGAG		59	8768131	8768227	TCTTGTTTCAGAGCCTTGAG		59	NA	
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071271,FBtr0071270	1	2	10	100	X	8770080	8770347	GATGATATGACTGGATCAATGC		59	8769829	8769847	GGATAGAATTTGGCACGGA		59	NA	
Drosophila melanogaster	50	l(1)G0095	FBgn0026679	FBtr0071234	3	1	1	60	X	8451245	8451265	CTATAGTTTAACGGCCATTGC		59	8451205	8451225	CATTATCTCCAGCTGATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15343	FBgn0030029	FBtr0071178	3	1	1	61	X	8166949	8166968	GCCAGATGTTAAGGATAAGG		57	8166907	8166925	TGGCTCCAATCAATCTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gclc	FBgn0040319	FBtr0071108,FBtr0071107	1	2	2	110	X	7997903	7997922	CATTGAACAGTATCTTCGCT		57	7997746	7997830	GAATCCTGCTTGTAATCCG		58	NA	
Drosophila melanogaster	50	fs(1)h	FBgn0004656	FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119	2	5	5	117	X	7944306	7944477	CAAGAAAGATGAGTCCGCT		59	7944207	7944225	ACTCGAACTGCTATCACTC		58	NA	
Drosophila melanogaster	50	CG4095	FBgn0029890	FBtr0070955	1	1	1	134	X	6577282	6577303	CGAGCTAAATGTATTCAAACCC		59	6577458	6577476	ATCTTGTCGATCCTCTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3847	FBgn0029867	FBtr0070905	3	1	1	60	X	6242092	6242110	CTTCTACTGTCCCAATTGC		58	6242134	6242152	CATATGAAGCTTCAGGGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14445	FBgn0029851	FBtr0112954,FBtr0070893	1	2	2	115	X	6132220	6132983	GATTCTACCGCAAGATTGC		58	6133062	6133080	GAACTTGTACATGGCATGC		59	NA	
Drosophila melanogaster	50	Mipp2	FBgn0026060	FBtr0070884	1	1	1	83	X	5978077	5978263	GCCATTAGTTCCTCTGAGG		59	5978012	5978030	CAATTTGAGAAGCGTACCC		58	NA	
Drosophila melanogaster	50	CG12239	FBgn0029810	FBtr0070814	1	1	1	60	X	5687667	5687686	GTCGAAGAGGAAGTAGAACG		59	5687709	5687727	GCCGTTGTATTTCTCTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16756	FBgn0029765	FBtr0070776	3	1	1	235	X	5321899	5321917	ATGGATCTCGGAACTATGG		58	5322180	5322199	CTAGATCCCACAGATAACCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG4165	FBgn0029763	FBtr0070774,FBtr0070772,FBtr0070773,FBtr0070775	2	4	4	80	X	5317037	5317157	TAGAACACTACCAGACACCT		59	5317200	5317218	ACTCATAGCACCAGATGTC		58	NA	
Drosophila melanogaster	50	Rnp4F	FBgn0014024	FBtr0070752,FBtr0112876,FBtr0112875,FBtr0070753	1	4	4	80	X	5214530	5214602	CCAAATAATGGGCTATCCG		58	5214468	5214486	CCATTGTATTCGCTTTCCA		58	NA	
Drosophila melanogaster	50	Rnp4F	FBgn0014024	FBtr0070752,FBtr0112876,FBtr0112875,FBtr0070753	1	4	4	80	X	5214530	5214602	CCAAATAATGGGCTATCCG		58	5214468	5214486	CCATTGTATTCGCTTTCCA		58	NA	
Drosophila melanogaster	50	CG2982	FBgn0029704	FBtr0070649,FBtr0070648	2	2	2	60	X	4215547	4215565	TTCAGCTCGCAAGATAGAG		59	4215589	4215607	CTCGGTCATAAGAAGACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lva	FBgn0029688	FBtr0070626	1	1	1	80	X	3858522	3858611	TCCTCGTTACAGAATGTATCC		59	3858462	3858483	CAGATTCTCTTTAAGGCTATCC		58	NA	
Drosophila melanogaster	50	Vap-33-1	FBgn0029687	FBtr0070619,FBtr0070618,FBtr0070616,FBtr0070617	2	4	4	95	X	3846066	3846153	GAGGATAAGTTTAAGCCATCCA		59	3846209	3846227	TTCAATGTTGCATTCACGC		59	NA	
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070522,FBtr0070511,FBtr0070514	3	14	14	87	X	3232771	3232789	CTACCAGAGCATGATACCG		59	3232840	3233011	AAGGGTTACTTGAAAGCGT		59	NA	
Drosophila melanogaster	50	kirre	FBgn0028369	FBtr0070560,FBtr0070559	2	2	2	66	X	3024318	3024336	AATGACCGGAGACTTTACC		58	3024435	3024453	TATGGCATCGTGATATTGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG2658	FBgn0024992	FBtr0070502	1	1	2	117	X	2590288	2590368	GATATCCTAGACAAGGCGC		59	2590189	2590207	GTTTCACCGATGACAAGTG		59	NA	
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	2	13	13	80	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567130	2567220	TGTATTGAGAGCTCATGCTC		59	NA	
Drosophila melanogaster	50	ptr	FBgn0003159	FBtr0070404,FBtr0070403,FBtr0070402	3	3	3	100	X	2243041	2243059	AGAGTTCCACTGAGTAAGC		58	2242892	2242910	TACACCTGACTAGCATCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	br	FBgn0000210	FBtr0070264	2	1	7	157	X	1548642	1548709	TAAGCTCTATAACCACAGCG		59	1548827	1548847	GAATTGAGGTAGGAGTCTGAG		59	NA	
Drosophila melanogaster	50	br	FBgn0000210	FBtr0070262	1	1	7	88	X	1531146	1531164	CCAATATCGATCCCTCAGC		59	1531360	1536928	CGTCAGTTTACCTTGAGGG		59	NA	
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	1	8	8	60	X	551391	551410	CATTATCTCATGGGATGCAG		58	551433	551451	TATCAGCTCAAACAGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR41604	FBgn0085814	FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269	1	4	4	104	U	3449415	3449487	TTTCTGAAGCAAAGTCCCA		59	3449555	3449573	CTTGATACTGATCTCCCGC		59	NA	
Drosophila melanogaster	50	plexA	FBgn0025741	FBtr0089226,FBtr0089223	1	2	5	80	4	1040636	1042882	CCATGTGTTCTAACGAAACTG		59	1040576	1040595	GGTTTCTCCTCCTAAAGGTG		59	NA	
Drosophila melanogaster	50	CG32016	FBgn0052016	FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232	3	6	6	146	4	974515	974656	CTACTCTCAAGAATTGCATTCG		59	974390	974408	CTTGGTGATTGCGTATCCT		59	NA	
Drosophila melanogaster	50	Thd1	FBgn0026869	FBtr0089106	2	1	1	82	4	570234	570347	TCGTTATAGTCGGGATAAATCC		59	570173	570191	CTTCCAGAAGTGATTGCCT		59	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	1	7	7	82	4	208987	209060	CGGATCATAGACTTACGGA		57	208923	208941	GAAGCATGGTTTAGTCAGG		58	NA	
Drosophila melanogaster	50	snmRNA:342	FBgn0065098	FBtr0091662	3	1	1	61	3R	19555870	19555889	CTTAGATATGGACGAGTTGG		57	19555828	19555846	TCTCAGACGAGAAAGTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ef1alpha100E	FBgn0000557	FBtr0085834,FBtr0085835,FBtr0085833,FBtr0085832	3	4	4	189	3R	27567379	27567397	TGGTCACCGAAGTAAAGTC		59	27567550	27567645	TTGAGCACAATCACCTGAG		59	NA	
Drosophila melanogaster	50	Ef1alpha100E	FBgn0000557	FBtr0085834,FBtr0085835,FBtr0085833,FBtr0085832	1	4	4	116	3R	27567452	27567470	CTTCAACGTGAAGAACGTG		59	27567550	27567645	TTGAGCACAATCACCTGAG		59	NA	
Drosophila melanogaster	50	CG31002	FBgn0051002	FBtr0085813	3	1	1	60	3R	27220764	27220782	CGATATTCCAGTTCCCGAG		59	27220662	27220682	AGTAGATGCAATCCTAAGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CDase	FBgn0039774	FBtr0085649,FBtr0085647,FBtr0085646,FBtr0085648,FBtr0085645	1	5	5	80	3R	26289006	26289024	CTGCTCTATGACATCTCCA		58	26289067	26289145	TTTGATGCACAGATACAGTC		57	NA	
Drosophila melanogaster	50	RpS7	FBgn0039757	FBtr0089423,FBtr0089425,FBtr0089422	3	3	4	69	3R	26032436	26033825	TTGAACACAAAGTCGACAC		58	26032385	26032403	AATTCGAAGGTAACATCGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Takr99D	FBgn0004622	FBtr0085507	1	1	1	98	3R	25777692	25777710	CACTGAACCCTTTAGTCGG		59	25777548	25777631	GATTTCTGGGTATCATTGCG		59	NA	
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0113466	2	1	9	81	3R	24728520	24745224	GACTATCTAACAGCAAAGCC		58	24745268	24745286	TGTGATGGAGAATGTCTCC		58	NA	
Drosophila melanogaster	50	Ppn	FBgn0003137	FBtr0085295,FBtr0085294	3	2	2	187	3R	24348345	24348425	AACTTGGTGATCAACACGA		59	24347926	24347944	TAGATGTAAGCTGGCTGAC		58	NA	
Drosophila melanogaster	50	CG17856	FBgn0039576	FBtr0085279	3	1	1	61	3R	24120012	24120030	AAACTGTACGATGAACGCA		59	24120055	24120073	GTCTTGGTCATGGAAAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	btz	FBgn0045862	FBtr0085220,FBtr0085221	1	2	2	60	3R	23528445	23528463	AAAGCATAAGGTCAAGGGT		58	23528485	23528505	GATGTGATCTATGTTGTCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ald	FBgn0000064	FBtr0084995,FBtr0084994,FBtr0084999	3	3	6	152	3R	22082688	22082706	CAAGAAGGAGAACATTGCT		57	22081053	22081071	AACCAAACGCCTTAGTAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG8934	FBgn0039391	FBtr0084945	3	1	1	69	3R	21739496	21739514	TATCCGCAACCTACTACGA		59	21739604	21739622	GGAACCAATTGATCCTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5959	FBgn0039387	FBtr0084940	3	1	1	60	3R	21724661	21724679	ACCCATTACTCCAGTTTCG		59	21724700	21724721	TGATTTGAAAGAGTACCTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	BG642167	FBgn0083939	FBtr0110770	2	1	1	69	3R	21632399	21632417	AGAAACATCCGATCTCTGG		58	21632450	21632468	ATTTATCGAGGCTTGAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10550	FBgn0039321	FBtr0084857,FBtr0084858	1	2	3	226	3R	21133346	21133424	TATACTGCTGAAGGATGGC		58	21133138	21133156	TAATCAATTCGTCAGTGGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG11891	FBgn0039309	FBtr0100221,FBtr0100222,FBtr0100223	1	3	3	60	3R	21098724	21098743	ACTGATCTTTGAACCAACGA		59	21098765	21098784	TATCTGATCCATTGATGCCT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33095	FBgn0053095	FBtr0100204	1	1	2	231	3R	20925152	20925170	GACACAAATGTCAAACGGA		58	20925846	20925864	CGTTCGACTTCATATCGGT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG11791	FBgn0039266	FBtr0113283,FBtr0084762	2	2	3	142	3R	20877259	20877277	TCTACAATTGCCTGAGTCC		58	20878307	20878327	CTTCAATTCTGGAGGTATCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11120	FBgn0039250	FBtr0084716	2	1	2	84	3R	20749875	20749895	CTTTCAGAGTCCTATTGAGGT		58	20749941	20750011	CCGGTTATTGACATTGGTC		58	NA	
Drosophila melanogaster	50	CG18410	FBgn0039226	FBtr0084741	2	1	1	97	3R	20624871	20624890	ATTGGGATTCAAGGACAAGG		59	20624248	20624266	CAATCAATCCCTTGATGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13631	FBgn0040600	FBtr0084693	1	1	1	60	3R	20595718	20595738	ATAGTTCGATTCGTATGACCC		59	20595760	20595778	CACTTTGAAGCCTCTAACG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13624	FBgn0039209	FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795	2	6	6	125	3R	20386538	20386624	TAAGGTGTACAAGCACAGTG		59	20386432	20386450	GTCATGTCATTGATGGTGC		59	NA	
Drosophila melanogaster	50	Golgin84	FBgn0039188	FBtr0084629	3	1	1	60	3R	20182428	20182447	AAAGGCTTTAACCCAATCAC		58	20182387	20182406	CTCACTCGTAACTCTTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Myo95E	FBgn0039157	FBtr0100517,FBtr0100518,FBtr0100519,FBtr0100520	3	4	7	117	3R	19985037	19985205	TACCCATTACCCGTATAACG		58	19984881	19984900	ACATTTCGATACAGCTTGAG		57	NA	
Drosophila melanogaster	50	Tsc1	FBgn0026317	FBtr0084546	3	1	1	86	3R	19956785	19956864	TTAAGCTTATGACGCACGA		59	19956914	19956932	AATTCGGTATGATCGGCAG		59	NA	
Drosophila melanogaster	50	Gdh	FBgn0001098	FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498	2	4	4	97	3R	19763339	19763461	AAGCTAAGATCATTGCCGA		59	19763260	19763278	GTACAGATCGGGAATGACC		59	NA	
Drosophila melanogaster	50	CG10365	FBgn0039109	FBtr0084447,FBtr0084448,FBtr0084446,FBtr0084449	2	4	4	108	3R	19554818	19554837	TATTCGAGGATATGTTCGCC		59	19555685	19556379	AGTGATTCCCTCTTTGTCC		58	NA	
Drosophila melanogaster	50	CG7029	FBgn0039026	FBtr0084312,FBtr0113270,FBtr0113271,FBtr0113269	3	4	4	93	3R	18614228	18614308	ATAGTTTCTATGCGGATCCC		59	18614364	18614382	TTGCGTTTCACTATGTCCT		59	NA	
Drosophila melanogaster	50	CG7029	FBgn0039026	FBtr0084312,FBtr0113270,FBtr0113271,FBtr0113269	1	4	4	92	3R	18614228	18614308	ATAGTTTCTATGCGGATCCC		59	18614363	18614381	TGCGTTTCACTATGTCCTC		59	NA	
Drosophila melanogaster	50	PyK	FBgn0003178	FBtr0084213,FBtr0084214	2	2	2	191	3R	18197875	18197951	CACTCATCTACAAGGAGCC		59	18198192	18198210	GCAGAATTTATTCGACGGT		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG33092	FBgn0053092	FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144	3	7	7	268	3R	17705102	17705177	AGGACTTTCGGGATTTGTG		59	17705407	17705427	AGGTACCAGTGAAGTTAATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Caki	FBgn0013759	FBtr0084161	3	1	5	106	3R	17643797	17643881	GGTTATCGTTTGAAGCACC		59	17643709	17643727	CTCGGTTATGGAGAGTCTG		58	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084062	1	1	22	92	3R	17190500	17190519	ATCTGGTGATTGGTAAAGAC		57	17190359	17190445	ACACATGGGTTATGATGTC		57	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt	3	22	22	87	3R	17202597	17202615	GATTGGTGTTATCCGTCTG		57	17202451	17202547	TTGTTCAGGAATACGATAGC		57	NA	
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0112915	2	11	12	120	3R	17033377	17036518	CTATCAGATCTGGAAGAGGAC		58	17036600	17036618	TTACAAGAAGCTGGGTGTC		59	NA	
Drosophila melanogaster	50	Stat92E	FBgn0016917	FBtr0089484,FBtr0089486,FBtr0089485,FBtr0089487,FBtr0100457	2	5	5	81	3R	16366167	16366256	TCATAATGTCAGAGATCCAGTC		59	16366107	16366125	GATGATTGACCGGATAGGC		59	NA	
Drosophila melanogaster	50	CG7333	FBgn0038715	FBtr0114553	2	1	1	88	3R	15427577	15427655	CGTGAAGTCAGTCATTATAACC		58	15427704	15427722	AGGAGAAGAGCTTAAAGGG		58	NA	
Drosophila melanogaster	50	CG3517	FBgn0038706	FBtr0083770	2	1	1	60	3R	15250532	15250552	CGTGGACATTATCACATATGC		59	15250492	15250512	GGTATCAATGCAATAGCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31221	FBgn0051221	FBtr0083762,FBtr0083763	3	2	2	122	3R	15279980	15282852	CTAATGAGATCGGACCTGG		58	15282937	15282956	CAAGAAGAACTTCACATCGC		59	NA	
Drosophila melanogaster	50	CG31241	FBgn0051241	FBtr0083570	2	1	1	60	3R	14082498	14082518	AGGAAAGAAAGACACAGTACG		59	14082540	14082558	AACAGATCATGATCGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14879	FBgn0038419	FBtr0083325	2	1	2	60	3R	12173001	12173020	TCCAACTTTCATCCACAGAG		59	12172960	12172978	GAATTTGCGTAGTCGAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pad	FBgn0038418	FBtr0083282	3	1	1	103	3R	12168619	12168638	CAGTACACCATAACGATGGA		59	12168704	12168777	TCTTCCAAAGCAGTCTGTC		59	NA	
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204	3	6	8	198	3R	11782022	11785052	GACTGATGAGGAACAATGG		57	11785214	11785232	CTCCCAATCGTTGTTAGTC		57	NA	
Drosophila melanogaster	50	CG5213	FBgn0038345	FBtr0083148	1	1	1	60	3R	11321190	11321208	GACAAGCGTAAATCTTCCC		58	11321232	11321250	CATGATGATCGTTCGTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14869	FBgn0038341	FBtr0083159,FBtr0083160	1	2	2	82	3R	11271112	11271130	ACAGTTCTGTGACAAGTCC		59	11270981	11271066	TCGTCACAGTGAGATTGAG		59	NA	
Drosophila melanogaster	50	CG14869	FBgn0038341	FBtr0083159,FBtr0083160	1	2	2	82	3R	11271112	11271130	ACAGTTCTGTGACAAGTCC		59	11270981	11271066	TCGTCACAGTGAGATTGAG		59	NA	
Drosophila melanogaster	50	CG31301	FBgn0051301	FBtr0083087	1	1	1	94	3R	11173269	11173287	ACTATGTGAGATCGGACGA		59	11173345	11173427	AAATTGTCTGGCGATTTGG		59	NA	
Drosophila melanogaster	50	Tm1	FBgn0003721	FBtr0089957,FBtr0089963,FBtr0089966,FBtr0089967,FBtr0089962,FBtr0089961,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965	3	10	12	206	3R	11120874	11120892	TTGCTCGAAGAAGACTTGG		59	11122405	11122424	GTATTTCTTGTCAGCCTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14861	FBgn0038280	FBtr0083023	2	1	1	60	3R	10840873	10840891	GGCATTGTTATTGTGTCCC		59	10840913	10840933	CCTGATCTTTATCCAGATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycC	FBgn0004597	FBtr0083010	1	1	1	60	3R	10715030	10715050	GATTTAGACAAGGTCCAGGAG		59	10714990	10715008	CCTTCCACAACTCGTACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8087	FBgn0038241	FBtr0082983	3	1	1	83	3R	10390392	10390410	TCACAGGATGCATTGACTG		59	10390327	10390346	CAGTTGTACTGGTTGTATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8790	FBgn0027610	FBtr0082747,FBtr0082748	2	2	2	159	3R	9193735	9193754	AAGAAGTACGTCAATACGGA		58	9193875	9193984	CATTATTGTAGTTGCGTCGT		58	NA	
Drosophila melanogaster	50	CG8795	FBgn0038139	FBtr0100149,FBtr0082774,FBtr0082773	1	3	3	127	3R	9157366	9157631	TTGTTATGCTCAGGAATGC		58	9157257	9157275	GTTAGAACTGTCGCATTGG		58	NA	
Drosophila melanogaster	50	CG34402	FBgn0085431	FBtr0112655,FBtr0112654	2	2	3	83	3R	8212108	8212234	TTTCTGGCTAGATTGCTCC		59	8212281	8212299	GAATGGCTGGCATTAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10041	FBgn0038014	FBtr0082613	1	1	1	60	3R	8177551	8177569	CTTTCGAATGAGTTCGTGC		59	8177509	8177527	GTTGTTTGGTTGGATTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14740	FBgn0037988	FBtr0082552	1	1	1	90	3R	7888309	7888327	TAATAGCGTGATTGGAGGA		57	7888167	7888186	TCCACGGTAATAAATACCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	wkd	FBgn0037917	FBtr0082414,FBtr0082413	1	2	2	135	3R	7409665	7409685	GGCCTACTCGATATACAATCC		59	7409782	7409858	GTCCTGCAGGTATACATCG		59	NA	
Drosophila melanogaster	50	CG6782	FBgn0037912	FBtr0100465,FBtr0100462,FBtr0100461,FBtr0100464	1	4	4	236	3R	7386647	7386665	GTTAAGAAGACGGTGGGAG		59	7386370	7386388	CTTCACCTTGATGGTCTCC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG5276	FBgn0037900	FBtr0082390	3	1	1	60	3R	7258194	7258212	CGATAGTCCTGGAATCAGC		59	7258236	7258254	ACTAGCTCAGATAGCTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL3	FBgn0020910	FBtr0082347,FBtr0082346	3	2	5	127	3R	7047973	7047991	GTAAGGTTAAGGCCTTCCC		59	7048082	7048293	CTTGTTGATCTTGGAGCCA		59	NA	
Drosophila melanogaster	50	SelR	FBgn0037847	FBtr0082296,FBtr0082294,FBtr0082292	3	3	6	166	3R	6692389	6692408	CAACAAACACTACGAGAAGG		58	6689539	6692261	GTATACGTTCTGGTATGCTG		57	NA	
Drosophila melanogaster	50	MED7	FBgn0051390	FBtr0082311	1	1	1	60	3R	6586021	6586039	AAGATTAAGACGGAGGTGG		58	6585979	6585997	AACTGGGATCATTCTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31272	FBgn0051272	FBtr0082312	1	1	1	80	3R	6582679	6582760	AAACGCATGATGACTTACG		58	6582617	6582635	TGTCATTAGACTGCTCACG		59	NA	
Drosophila melanogaster	50	CG3999	FBgn0037801	FBtr0082225	3	1	1	91	3R	6077677	6077898	GACAAACCTCTGAATGAGC		58	6077953	6077971	TAACCCATTCCGATGTAGG		58	NA	
Drosophila melanogaster	50	nmdyn-D7	FBgn0028997	FBtr0082083	3	1	1	98	3R	5506303	5506321	ATAAACCAGGGCATGATGG		59	5506381	5506451	GTTCATAAGGACTGAAGAGGA		58	NA	
Drosophila melanogaster	50	CG34117	FBgn0083953	FBtr0110817	3	1	1	60	3R	5225516	5225534	AACAACAATTCTGCAAGGC		59	5225474	5225492	TAGGTCAGGTAGGTTTGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8121	FBgn0037680	FBtr0082017,FBtr0082019,FBtr0082018	2	3	3	102	3R	5161886	5161905	ATATGCTCATTGTCTTTGCC		58	5161970	5162218	TTCCTCTCGTATTCCTTGC		59	NA	
Drosophila melanogaster	50	CG8861	FBgn0037676	FBtr0082059	2	1	1	77	3R	5121442	5121461	ATGTTAGTGAACTGTCGACC		59	5121250	5121268	AATACGTTTGTGTCTCCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8444	FBgn0037671	FBtr0081978	3	1	1	71	3R	5087030	5087051	GTCTGCGATATTAACTTTGAGC		59	5087345	5087363	CTCGAAATCACCAAAGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31100	FBgn0051100	FBtr0082011	2	1	1	139	3R	4825367	4825776	ATTGCTATTCGGATATGGC		57	4825246	4825264	GGTTAATGGAACTGAACCA		57	NA	
Drosophila melanogaster	50	Mcm2	FBgn0014861	FBtr0081827	1	1	1	60	3R	4091323	4091342	TAAAGAGTGGGTCAGTATGC		59	4091364	4091383	AAAGGATTGAAAGCGATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dsx	FBgn0000504	FBtr0081760,FBtr0081761	3	2	3	73	3R	3761526	3761544	ATATTAAAGGACGCAGACG		57	3761357	3761375	TCATTCACAACGTATTGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34127	FBgn0083963	FBtr0110849	2	1	1	87	3R	3402045	3404694	AATATCGGTAGATACGACCTG		58	3401978	3401996	CGATTCCATATTGCACGTC		59	NA	
Drosophila melanogaster	50	CG10050	FBgn0037492	FBtr0081577	1	1	1	60	3R	3076273	3076291	GTGCAAGTACCAACTAGAC		57	3076312	3076333	CTTCAATAGAAACTCCTTGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dj	FBgn0019828	FBtr0089742,FBtr0089741	2	2	2	61	3R	2885313	2885331	GTCTCTATTCACGATCCGC		59	2885356	2885374	AACTTTCGTTGCATTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Scr	FBgn0003339	FBtr0081659,FBtr0081657,FBtr0081658	3	3	3	73	3R	2667000	2667018	CAATGGAAAGAAGAACCCG		58	2651400	2666963	CATTCACAGTACTCGTCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2336	FBgn0037455	FBtr0089748	3	1	1	69	3R	2406732	2406814	CTATCAGTCTAGAAGAGGAGG		57	2406844	2406863	TAATCAATCAGTGGAGTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10280	FBgn0037395	FBtr0078648	2	1	1	60	3R	1836839	1836857	CCTTCAACTCCCTAACGTG		59	1836797	1836815	AGGTAGTCATCTACCTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078674	1	1	5	82	3R	1587160	1587380	CAAATTCGGACATGTTATGGAG		59	1586623	1586641	GAAGACGCTTCTGGTACTC		59	NA	
Drosophila melanogaster	50	Xe7	FBgn0010772	FBtr0078729,FBtr0078728	2	2	2	96	3R	1493795	1493813	GTGATCCGTACCGAAAGAG		59	1493658	1493737	TCGAACTGAACATATCCTTCG		59	NA	
Drosophila melanogaster	50	RpL13A	FBgn0037351	FBtr0078705	3	1	1	132	3R	1450615	1450633	GTTGTTATTGATGGTCGCG		59	1450729	1450747	TGTTCCTGTAGAAGTGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kkv	FBgn0001311	FBtr0078798,FBtr0078800,FBtr0078799	1	3	3	99	3R	1204859	1204877	GTAAGAATTCGGTGATGGC		58	1204709	1204796	TTGTTGTTAATCGGTGCTC		58	NA	
Drosophila melanogaster	50	CG12000	FBgn0037314	FBtr0078805,FBtr0078806	2	2	2	76	3R	1183098	1183116	CAAGGACAGGGACTTTACC		59	1182969	1182987	TATCGCGGTAGTAAAGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12589	FBgn0040684	FBtr0078843	1	1	1	75	3R	963147	963165	ATATGGAACTGGACTTCGG		58	963090	963108	ACCAAATTCTCAGGCTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897	1	5	15	192	3R	110112	120843	ATTAAGTGCCGTTAAAGGC		58	120999	121298	GATGTTGTACTTATCGCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG32230	FBgn0052230	FBtr0070041,FBtr0070040	3	2	2	101	3L	23332708	23332726	TAATCCCGATGTCACTTGG		59	23334566	23334585	TTGGAATAATCCCTCACAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34031	FBgn0054031	FBtr0100086	3	1	1	73	3L	23178640	23178659	TATCTCTGACGGAAGTTCAG		58	23178694	23178713	CGAAGTCAACTGTTTCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SPoCk	FBgn0052451	FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532	1	4	4	60	3L	22776810	22776830	GTCAATGATGATTTCCACACC		59	22776904	22776922	TGTAGAATATGCCCTTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Aats-ile	FBgn0027086	FBtr0078500,FBtr0078499	1	2	3	83	3L	22281968	22281986	GAACGTACTGCAGAAATGG		58	22282033	22282115	TAGAACGTGTATTTGGGCT		58	NA	
Drosophila melanogaster	50	Hem	FBgn0011771	FBtr0078510	1	1	1	60	3L	22279363	22279381	ATGTTTGACGACCAATTCC		58	22279321	22279339	CTATGATGTAGCGGTTCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11306	FBgn0037108	FBtr0078422	3	1	1	81	3L	21620493	21620574	TCTCAAGAATGTACAAGTGGG		59	21620616	21620635	TGCAGAATATGATTCTCGGT		58	NA	
Drosophila melanogaster	50	CG5656	FBgn0037083	FBtr0078396	2	1	1	87	3L	21436826	21436948	TGTCCAAGACTTATTGCGT		59	21436757	21436775	AGATAGTTCGCCTTGATCC		58	NA	
Drosophila melanogaster	50	CG12977	FBgn0037052	FBtr0078321	1	1	1	166	3L	21178402	21178420	ACATCTGGAAAGAATCGCA		59	21178102	21178273	GGTAAAGGTTTGATGTCCCT		59	NA	
Drosophila melanogaster	50	skd	FBgn0003415	FBtr0078328,FBtr0112830,FBtr0078329	1	3	3	80	3L	20989472	20989493	TTTCTAACATTCGAGGAAGAGG		59	20989354	20989431	GTCCATATGAGTGTCCCAG		59	NA	
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234	2	10	10	73	3L	20826943	20826961	CAAATGCGTCAAACTGGAC		59	20827130	20827148	TGTTGCGTTTGAGTATGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Pka-R1	FBgn0000275	FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234	1	10	10	72	3L	20826943	20826961	CAAATGCGTCAAACTGGAC		59	20827129	20827147	GTTGCGTTTGAGTATGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Toll-9	FBgn0036978	FBtr0078240	2	1	1	80	3L	20357490	20357509	CAACCGGTAGAAACTATACG		57	20357214	20357450	CTATAGATTGGGATGAACTTCC		57	NA	
Drosophila melanogaster	50	CG14184	FBgn0036932	FBtr0074872	1	1	1	148	3L	20021395	20021413	TAAGATTGTACTCGCAGCG		59	20021151	20021224	GAGCTTCATTTGAGCAGTG		59	NA	
Drosophila melanogaster	50	Paps	FBgn0020389	FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885	1	6	6	93	3L	19853427	19853509	TAGACAGCATGGAGATCCT		59	19853566	19853584	AACTCATCCTTCCTCTTGG		58	NA	
Drosophila melanogaster	50	fz2	FBgn0016797	FBtr0112890,FBtr0075029,FBtr0075028	3	3	3	73	3L	19139114	19139132	AATGAACCATGAGACCCAG		59	19139059	19139077	AGCATTTGATCTCCACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	BG642378	FBgn0052203	FBtr0110771	2	1	1	60	3L	19122594	19122614	GACTTCTCTATCTGAGCAAGG		59	19122554	19122572	AATTGAAGGGCACTTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GNBP2	FBgn0040322	FBtr0075095	1	1	4	86	3L	18668073	18668332	AGTGTCCATACCAGATGAG		58	18668005	18668023	ATGTAGTCCATTAGAGCCG		58	NA	
Drosophila melanogaster	50	sina	FBgn0003410	FBtr0075332,FBtr0075333	3	2	2	90	3L	16850362	16850380	CAATTCACAACTCGGACTG		58	16850433	16850452	GATATGGTCACGTTAATGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4877	FBgn0036624	FBtr0075386,FBtr0075387	2	2	2	83	3L	16382651	16382671	ATCTGCTAGATAGCAATCCAG		59	16382716	16382792	CCATGTCCTGGTTACTGTC		59	NA	
Drosophila melanogaster	50	Notum	FBgn0044028	FBtr0075436,FBtr0075435	1	2	2	83	3L	16023316	16023335	GGATACCGACTATATCCCAC		58	16023445	16023463	ATTATCCACTCGCATTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG18081	FBgn0036537	FBtr0075537	3	1	1	63	3L	15827849	15827867	GAAGGCACTTGTCTATGTG		58	15827522	15827540	CTTGTAAGTCTTCGGATCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7304	FBgn0036527	FBtr0075576	1	1	2	86	3L	15673901	15673978	AATCAAGGAACCTGAAACG		57	15674028	15674046	TATTCAGGAGATGTGGCTG		58	NA	
Drosophila melanogaster	50	CG7656	FBgn0036516	FBtr0075594,FBtr0075592,FBtr0075593	1	3	3	62	3L	15580353	15580371	GACTATCCATACTCACCGC		59	15580309	15580327	GTAAACATTCGGATGCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13454	FBgn0036503	FBtr0075603	3	1	1	67	3L	15510070	15510090	GAGGATATGTTCAAGGAAGTG		58	15510023	15510041	GAGAAATCCTCGTTTCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5392	FBgn0036463	FBtr0075671	3	1	1	62	3L	15004308	15004329	GCTGTGGAATCTATAAGATCAC		58	15001065	15001083	GACCTGATTGCAACATGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10738	FBgn0036368	FBtr0075805	2	1	2	133	3L	13458084	13458162	ATCATCGCTATCACAGTGAC		59	13458258	13458276	AATACTTTGGCAGGACAGG		59	NA	
Drosophila melanogaster	50	CG10732	FBgn0036365	FBtr0075851,FBtr0075852	3	2	2	201	3L	13437395	13437475	CATTAAGCGAGATGAGCGA		59	13437640	13437658	TCGTTAAGGTGAGTCTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14107	FBgn0036351	FBtr0075866	1	1	1	60	3L	13373761	13373780	AGAGGAAACTCCATCTACAG		58	13373720	13373741	CTTCTTGTTATCCTCGATTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SRm160	FBgn0036340	FBtr0075883	1	1	1	252	3L	13031739	13031757	TATTCTCGCTCTCCAAGAC		58	13032043	13032061	TATAGCGATTCTGTTGCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpS12	FBgn0014027	FBtr0075878,FBtr0075880	2	2	2	60	3L	13016618	13016842	GTTGATGTTGATGTTCCCT		57	13016866	13016884	CAGTGTTAATGTCCATGGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG10948	FBgn0036317	FBtr0075939	2	1	3	111	3L	12841550	12841568	ATGTACGAAGACTCCATGC		59	12840244	12841476	TCAATCTGAGTGAATTGCGT		59	NA	
Drosophila melanogaster	50	CG14126	FBgn0036223	FBtr0076068	3	1	1	65	3L	11930167	11930185	TTGGACACCTAACAACCAG		59	11930120	11930138	AACAGTGCTTGATATGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7264	FBgn0036214	FBtr0076035	2	1	1	81	3L	11822600	11822618	GGAGCAGTACGAAGATGAG		59	11822719	11822737	ATCCAGCATTTCTAGGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11597	FBgn0036212	FBtr0076080	3	1	2	119	3L	11814982	11815000	TATAAGGGATTTGAGCCGC		59	11814530	11814550	CATCTCTATTCTTAAGTCGGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG11658	FBgn0036196	FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127	1	5	5	86	3L	11694639	11694657	AACAAGGGTATTGCCAGTC		59	11694509	11694589	GCTGTCATTTACATGCGAG		59	NA	
Drosophila melanogaster	50	CG7557	FBgn0036159	FBtr0076174,FBtr0076175	3	2	2	61	3L	11439449	11439467	CAGGAAGCTATGAAGACCG		59	11439492	11439510	TGTAGTAACAGCAATCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6149	FBgn0036158	FBtr0076180	3	1	1	60	3L	11427947	11427965	TGTCCTTATCATGGTCCTC		58	11427905	11427923	GACGTTATTAACTCGCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18490	FBgn0036149	FBtr0076167,FBtr0076166	2	2	2	166	3L	11219659	11219744	GATGCGTCAGTAAACAAGC		59	11219872	11219892	GGTATTTCATCAACGTCATCG		59	NA	
Drosophila melanogaster	50	CG32082	FBgn0052082	FBtr0076216,FBtr0113423,FBtr0113422	3	3	3	109	3L	11152568	11152586	AGTGGATACAGTACCAGCA		59	11152659	11152872	TCCTTAATTCGTTCCAGGC		59	NA	
Drosophila melanogaster	50	Mocs1	FBgn0036122	FBtr0076206,FBtr0076205,FBtr0076204	1	3	3	109	3L	11064200	11064218	TTTCTCTAACCGAACGCTG		59	11064720	11064738	TAGACGAAGGATTTCCTCG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	SuUR	FBgn0025355	FBtr0076203	3	1	1	83	3L	11059301	11059320	AAGGAGGTATTCAGTAAGCG		59	11059364	11059470	ACGAAAGTCCTTGATGTACTC		59	NA	
Drosophila melanogaster	50	CG6685	FBgn0036062	FBtr0076355	2	1	1	87	3L	9960874	9960945	CATTGACTTGAATGAGGCC		58	9960805	9960823	AAATTCTTTGGTCGCATCG		59	NA	
Drosophila melanogaster	50	CG3335	FBgn0036018	FBtr0076383	2	1	1	66	3L	9619736	9619754	ATAGATGGTAATCCCGTGG		58	9619842	9619860	CGCCATCATTATCTTGGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32043	FBgn0052043	FBtr0114368,FBtr0076465,FBtr0114367,FBtr0076466	1	4	4	107	3L	9463441	9463459	AATTCGCTCGATATCTGGG		59	9463530	9463670	CCTTCGTGTAGATTTCCGT		59	NA	
Drosophila melanogaster	50	MTF-1	FBgn0040305	FBtr0113323,FBtr0113322,FBtr0113324,FBtr0076460,FBtr0076459	2	5	5	189	3L	9429057	9429075	ATACGAATGTGAGGTGTCC		59	9429335	9429354	ATCTTCCGGACATTTGTAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	bol	FBgn0011206	FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538	3	4	4	131	3L	9101077	9101097	ATATACCCATGGATCAGTTCG		59	9100463	9100724	TGGTGGGTACATTCATTGG		59	NA	
Drosophila melanogaster	50	CG13315	FBgn0040827	FBtr0076530	3	1	1	180	3L	9090126	9090144	GTGAACCATTTGATCGGAG		58	9090288	9090306	AGCTGCGATCATAGTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076777,FBtr0076779,FBtr0076780	2	3	8	164	3L	7811314	7813097	AAATCAAACGGCAAATCCAC		59	7811169	7811187	TTGTGTTACCTTGAGGTCG		59	NA	
Drosophila melanogaster	50	Cpr65Ec	FBgn0035737	FBtr0076909	3	1	1	64	3L	7086534	7086553	GAGACTCGCGAGTATAAGAG		59	7086580	7086598	GACGTCTGGTACTGATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Glu-RI	FBgn0004619	FBtr0076982	1	1	1	137	3L	6626307	6626327	GAAAGAGAACGGGTTATAGAC		57	6626425	6626508	CACGCTTATCCAAATTTCCT		58	NA	
Drosophila melanogaster	50	CG8368	FBgn0035707	FBtr0076976,FBtr0076977	1	2	2	60	3L	6600659	6600678	GGATCACCGACTATCTAACC		59	6600698	6600719	GTCACTTGCTCCATAATTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr65Au	FBgn0042119	FBtr0077060	1	1	1	103	3L	6125048	6125068	GGGCGATAAATATTCCTTTGC		59	6124623	6124641	CAGACAAGGAACCATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13712	FBgn0035570	FBtr0073364	2	1	1	263	3L	4709828	4709847	TATTCCAGCTACAGCAACTG		59	4709584	4709602	TCTGTCCCTATATTCCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11347	FBgn0035542	FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141	3	6	6	227	3L	4419446	4419464	GTATTAGGTCCACCCAGGA		59	4419654	4419749	TGTTCTTGCTCTTCTGACTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Ero1L	FBgn0028736	FBtr0073216,FBtr0073217	1	2	2	139	3L	4173146	4173167	AAGATTCTCTACTCAGAGAAGC		59	4173267	4173346	TTGGATAGTCTGCCAAACG		59	NA	
Drosophila melanogaster	50	mas	FBgn0011653	FBtr0073260	2	1	1	80	3L	4162760	4162780	CAATATCTATGTGGAGCTGCT		59	4162642	4162718	GGAACGAACAATGTTGGTC		59	NA	
Drosophila melanogaster	50	Gr64e	FBgn0045476	FBtr0073199,FBtr0073200	1	2	2	94	3L	4034471	4034489	TCTGAAGTTGCCCAAAGAG		59	4034547	4034625	TCATAATGTGCTCCACCAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG15878	FBgn0035316	FBtr0072911	2	1	1	68	3L	2211098	2211116	CTGGTCGGAAGTATAGCTG		59	2211048	2211066	TTATTCTGTCTTTGGCGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8960	FBgn0035315	FBtr0072872,FBtr0072871	3	2	2	73	3L	2197821	2197839	TAACCTCCCAACCAAATCG		59	2197876	2197894	GGGCAACTAACTAATTGGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG18170	FBgn0035239	FBtr0100190,FBtr0100191	2	2	2	72	3L	1603341	1603359	AACAAATAGACTCGCAACC		58	1603395	1603471	GTTGTGGTTCCTATCGAGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG9173	FBgn0035218	FBtr0072720	2	1	1	60	3L	1422150	1422171	GATTATCTCAACAAACTGTGGG		59	1422111	1422129	GCACATACGATGGATTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ptp61F	FBgn0003138	FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718	2	4	4	144	3L	1346060	1346078	AGAAACAGATCAAGTGCCA		59	1345856	1345953	TCGGTTAATTTGAACCATCG		58	NA	
Drosophila melanogaster	50	Myo61F	FBgn0010246	FBtr0072675,FBtr0072673,FBtr0072672,FBtr0072674	1	4	4	83	3L	1326066	1326084	TCCTCGAGAACTACCAGAG		59	1326127	1326210	CAATGTAGGTATAGATCAGGTCC		59	NA	
Drosophila melanogaster	50	CG9134	FBgn0035199	FBtr0072661,FBtr0072660,FBtr0072659	3	3	3	105	3L	1269165	1272973	CTTCTTCAAGGCAAACTGG		58	1273042	1273060	GTGCTTCTCCAGTCTATCG		59	NA	
Drosophila melanogaster	50	CG33229	FBgn0053229	FBtr0072499	2	1	1	195	3L	224469	224487	CATTCAAACACGGTTTGTG		58	224646	224664	GTTGTTGCATGTGTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pyx	FBgn0035113	FBtr0072525,FBtr0072524	2	2	2	105	3L	219642	219727	AAATGTTCACAAAGGTGGC		59	219555	219575	GGATAATCATTGAAGAGCACG		59	NA	
Drosophila melanogaster	50	CG7049	FBgn0035102	FBtr0072537	2	1	1	60	3L	175335	175353	ACGTAAATGACGTTAGCGA		59	175293	175311	TGACACAGATAAGAACCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-3378	FBgn0082963	FBtr0113518	3	1	1	67	2R	17217229	17217248	GATTGCTAAACTAGCATGGC		59	17217277	17217296	TAGTATGCGGCATTATAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30428	FBgn0050428	FBtr0072451	2	1	1	98	2R	21141567	21141585	AACTGACCAAGACGATTCC		59	21141695	21141714	CTATGCTCTAACTGACCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpL19	FBgn0002607	FBtr0072406,FBtr0072405	2	2	2	63	2R	20856643	20856661	AGATCGCTAACACAAACTC		57	20856532	20856550	TTGATGATCAGACCATCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3663	FBgn0035044	FBtr0072323	2	1	1	98	2R	20549494	20549513	GAGGATGTCGTGCTATATGG		59	20549631	20549649	GTCCGCCACTATGTATACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ken	FBgn0011236	FBtr0072129	3	1	1	87	2R	19762609	19762683	GTTGATAAGGAACCTGCTG		58	19762732	19762752	CTTAAAGTAGGTGGCATTCAC		58	NA	
Drosophila melanogaster	50	apt	FBgn0015903	FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067	2	5	5	84	2R	19484451	19484469	TTTATGAAGATTGCCGCCA		59	19484516	19484597	TGTACTGTGTCATTTCCGTC		59	NA	
Drosophila melanogaster	50	CG30190	FBgn0050190	FBtr0071950	1	1	3	145	2R	18817594	18817731	CAACTACAACATTCGCAGC		59	18817840	18817927	TCATCTCTTCCAGCAACTC		58	NA	
Drosophila melanogaster	50	Obp59a	FBgn0034766	FBtr0071869	2	1	2	60	2R	18590573	18590595	GAGATGAATATGGTAGGTGATCC		59	18590614	18590633	GCTTCTCTGAAGGATTTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Act57B	FBgn0000044	FBtr0100177,FBtr0071519	2	2	2	60	2R	16832500	16832519	TATCCTCACCCTGAAATACC		58	16832541	16832560	CTCCATATCATCCCAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9235	FBgn0034560	FBtr0071517	2	1	1	60	2R	16797304	16797323	GCTCGCTAGAAGACATATCC		59	16797346	16797364	GCCAGGATGAATTTGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp57a	FBgn0043535	FBtr0086294	3	1	1	60	2R	16392892	16392913	CGACAATTTGGATAATGTCCTC		59	16392933	16392952	CTTAATGTTGCACTTGTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8929	FBgn0034504	FBtr0086283,FBtr0086285,FBtr0086284	1	3	3	80	2R	16217662	16217743	ACCTGAAGGACTATATCAAGTG		59	16217783	16217802	AGTACTCATAGTAGCGTTCC		58	NA	
Drosophila melanogaster	50	CG11048	FBgn0034487	FBtr0086316	1	1	1	103	2R	16128865	16128884	TACTTACAAGCTGCGATCAG		59	16129017	16129035	CGGTCGAATATCACTTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494	1	7	7	151	2R	15418201	15419688	TATTGAGGGTAAAGGCACC		58	15418068	15418088	CTCAATTGTAGATGTCCACCT		59	NA	
Drosophila melanogaster	50	CalpA	FBgn0012051	FBtr0086529,FBtr0112869	2	2	3	111	2R	15315957	15315975	TGGTCACTACCTGATTGTG		58	15316047	15316760	CACATGATCATCATTCTCTTCC		58	NA	
Drosophila melanogaster	50	CG15072	FBgn0034376	FBtr0113095,FBtr0113094,FBtr0086604	2	3	3	80	2R	14588756	14588831	GAGCTGCAAAGCTATATGC		59	14588875	14588893	ATGTGCTACGGATAGATCC		58	NA	
Drosophila melanogaster	50	Gint3	FBgn0034372	FBtr0086656,FBtr0086654,FBtr0086655	2	3	3	106	2R	14546145	14546222	ATGACTGCAAACTCATTCC		58	14546057	14546075	CAGCATTAGAAGGTCTTCC		57	NA	
Drosophila melanogaster	50	CG30116	FBgn0028496	FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718	2	4	4	80	2R	14363162	14363624	GATTATCGCCTTATGAACGTG		59	14363102	14363120	CGATTGAAAGGCTTGTTCC		59	NA	
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	1	8	8	97	2R	14032395	14032483	AGGAAAGAATTCTGAGAAGC		57	14032543	14032561	CAATCATCGGATACAGACG		57	NA	
Drosophila melanogaster	50	CG10931	FBgn0034274	FBtr0089545	3	1	1	71	2R	13637258	13637276	AACACCCTTAGGCTATGGA		59	13637311	13637329	GAACTCATTCAAATGCCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10931	FBgn0034274	FBtr0089545	1	1	1	60	2R	13637207	13637225	TATGTGAAGTTCTCACCGA		57	13637248	13637267	TAAGGGTGTTGTTCAATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab4	FBgn0016701	FBtr0086830,FBtr0086831,FBtr0086829	3	3	3	93	2R	13461207	13461296	TCGGAAACATACGATTACCTG		59	13461351	13461369	ACTTGCTCTCGATGAAGTG		59	NA	
Drosophila melanogaster	50	Ngp	FBgn0034243	FBtr0086906	3	1	1	84	2R	13454602	13454623	CTATTCTTAGTGCCGAATATCC		58	13454481	13454499	AATAGATTGATGAGCGCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	mbl	FBgn0053197	FBtr0086993	1	1	4	184	2R	13163393	13163411	TCAATATGAACAGCCTGCT		58	13163557	13183348	TGTACATACCTTGATGCTGTC		59	NA	Nonspecific
Drosophila melanogaster	50	CG34191	FBgn0085220	FBtr0112384	3	1	1	62	2R	12839795	12839814	TTAAGGTGCTTAGTGTTCCG		59	12839839	12839857	CTTCAGAGGCGAATTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5522	FBgn0034158	FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026	1	6	6	81	2R	12676157	12676301	CTACTACACTATAGCAGCCTC		58	12676344	12676362	ATCCAACTGCTTGATGGAG		59	NA	
Drosophila melanogaster	50	Vkor	FBgn0053544	FBtr0091510	3	1	1	61	2R	12666170	12666189	TATCCTGTACTTCTTGAGCT		57	12666268	12666286	CTATCAATTGGACCAGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dg	FBgn0034072	FBtr0087258,FBtr0087257,FBtr0087256	3	3	3	132	2R	11972593	11972678	TTTATGGCCTACCTCTGGA		59	11972479	11972497	TTAATGGTCCTAACCGCTC		59	NA	
Drosophila melanogaster	50	CG12963	FBgn0034031	FBtr0113082	3	1	4	81	2R	11443855	11443932	TGATAAGGGCCTATATCTGTC		58	11443974	11449329	ACATTACGATCAGATTCGTG		57	NA	
Drosophila melanogaster	50	GalNAc-T1	FBgn0034025	FBtr0087332,FBtr0087331	1	2	2	60	2R	11401756	11401906	GACTTCCATCCTTACAAATTCC		59	11401927	11401945	TGCGGGCAGTATTAATACC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Arf51F	FBgn0013750	FBtr0087377,FBtr0087375,FBtr0087379,FBtr0087376,FBtr0087378	3	5	5	190	2R	11211471	11211489	TAAGATTCGACCGCTATGG		58	11211643	11211715	GTTTCATTGCATCAGGCAG		59	NA	
Drosophila melanogaster	50	CG33505	FBgn0053505	FBtr0091445	2	1	1	118	2R	10747041	10747060	GGAAGATCACAGAGGAATCG		59	10746885	10746960	TAAACCGATTGCTCCATCC		59	NA	
Drosophila melanogaster	50	Aats-phe	FBgn0020766	FBtr0087594	2	1	1	63	2R	9856296	9856316	GCTATTACATCAATCAGCAGC		59	9856341	9856359	ATCAATTCCACCTGATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17041	FBgn0033822	FBtr0087749,FBtr0113080,FBtr0087750	3	3	4	158	2R	9150200	9150218	TACTCGAGATCAACGAGGA		59	9150451	9150469	TCACAATCGACTTCTCCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4679	FBgn0033816	FBtr0087759	2	1	1	60	2R	9125407	9125425	GCCCAACATCTACATACCC		59	9125365	9125388	GATCTCAATAGCTCTTAGGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PR2	FBgn0013955	FBtr0087777,FBtr0087776	1	2	2	85	2R	9036510	9036531	GTGAAACCTATTTCTGTGAAGG		59	9036384	9036464	TCAATCATCGACCTAGCAC		59	NA	
Drosophila melanogaster	50	Cpr49Ae	FBgn0033728	FBtr0087920	2	1	1	94	2R	8291004	8291680	ACAACTATGCCTATGAGACG		59	8291737	8291755	GATGATCACGTCACTGGAG		59	NA	
Drosophila melanogaster	50	CG30039	FBgn0050039	FBtr0088023	2	1	1	61	2R	7938837	7938855	GCAAGGATCCATAAACGGA		59	7938794	7938812	CACTTGGTACAGTTCACAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30038	FBgn0050038	FBtr0088057	1	1	1	120	2R	7784025	7784108	CAATCGAGATTTGTCGTACAG		59	7783925	7783943	ATATTGTTGAACTGCACCG		58	NA	
Drosophila melanogaster	50	CG30033	FBgn0050033	FBtr0088117	2	1	1	101	2R	7180097	7180115	GATCATCACTCCGTCACTG		59	7180239	7180257	AATATTGGACCCACTACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9084	FBgn0033582	FBtr0088197	1	1	1	243	2R	7105641	7105719	TTAACGATGCCCTAACAGG		59	7105416	7105437	GGTGGTATCCAAATTTCTAGAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0089345,FBtr0089343	3	2	26	189	2R	6419761	6419779	GTTGAGGATTTGACACTGG		58	6393564	6419548	GCGTAATACTCAGATCTTGG		57	NA	
Drosophila melanogaster	50	CPTI	FBgn0027842	FBtr0088308,FBtr0088307	3	2	2	117	2R	6357801	6357882	AAATACAACCAACGATGAGC		58	6357703	6357721	ATACAGGCAGAACAGATGC		59	NA	
Drosophila melanogaster	50	Caf1-105	FBgn0033526	FBtr0088310	2	1	1	60	2R	6355482	6355500	GGATCCGTGGATAACACAG		59	6355440	6355458	GAATAGCCAGTGATTTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33475	FBgn0053475	FBtr0088318	2	1	1	60	2R	6298483	6298503	GATATCCAAGGTTTACTCGGT		59	6298443	6298462	TCTAAATACCGTGGAATTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eve	FBgn0000606	FBtr0088390	2	1	1	122	2R	5867148	5867166	ATAACTCCTTGAACGGCAG		59	5867251	5867270	AGTTCTCCTTGTAGAACTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mef2	FBgn0011656	FBtr0088443,FBtr0088445	2	2	6	170	2R	5806555	5806941	CCTGATAATTTATCCATCGGG		58	5806290	5806308	CTTAGATTGGAAGCTCGTC		57	NA	
Drosophila melanogaster	50	CG1773	FBgn0033439	FBtr0088467	1	1	1	85	2R	5594446	5594539	CTTTAAAGATCACATACGACCC		58	5594585	5594603	CCATGTAGGATTGTCCCAG		59	NA	
Drosophila melanogaster	50	CG30002	FBgn0050002	FBtr0088466	2	1	1	155	2R	5592562	5592655	CTTTAAAGATCACATACGACCC		58	5592769	5592789	TCAGTTCTTATATCCACCTCC		58	NA	
Drosophila melanogaster	50	CG8008	FBgn0033387	FBtr0114598	1	1	2	80	2R	5048394	5048415	AGTGATATTCCACTACAACGAG		59	5048267	5048355	GTCTCAATGGCATTGATTTCC		59	NA	
Drosophila melanogaster	50	CG8709	FBgn0033269	FBtr0088815	3	1	2	200	2R	4026691	4026709	TTAAGATCGCCTGTCTGTC		59	4026084	4026448	GATTGATGTAGCCAGAGGAC		59	NA	
Drosophila melanogaster	50	cathD	FBgn0029093	FBtr0088898	1	1	1	69	2R	3710079	3710100	CCTCTATTAACCAGAAGATTGG		57	3709968	3709986	ATGAGATCGCAAGAAACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1553	FBgn0033224	FBtr0088902,FBtr0088901,FBtr0088900	3	3	3	123	2R	3690702	3691032	GATATTTCCGAGACTTCATCG		58	3690599	3690617	CAAAGGCCATCACATTGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	U2A	FBgn0033210	FBtr0088941	2	1	1	60	2R	3563682	3563701	CAATACATAAACCCATGCCG		59	3563641	3563660	TTTGTGGAATCTTATAGCCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30495	FBgn0050495	FBtr0088920	2	1	1	86	2R	3545173	3545251	GCAGAGAACTTCAAGAAAGAG		58	3545299	3545317	TTTCGTCAATCTATGCGGT		59	NA	
Drosophila melanogaster	50	Rpt1	FBgn0028687	FBtr0088947	3	1	1	60	2R	3540082	3540103	AAGAAGGTTATCAAGAGCTACG		59	3540043	3540061	AGTTGTAGGTCATGTAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15237	FBgn0033104	FBtr0086212	3	1	1	144	2R	2696942	2696960	CATACCCGGAATTGAGACC		59	2696749	2696767	GTTCATCTGAATGTCGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7856	FBgn0033056	FBtr0086024	1	1	1	60	2R	1946083	1946102	AGATTTCTACCGATCAGGAG		58	1946042	1946060	CGATTTCTGGAAGTAGGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12547	FBgn0040521	FBtr0111273	1	1	1	75	2R	674664	674682	AAAGGTTATGCCTGTCGTC		59	674545	674563	TAGTCTACCGTCAATGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17683	FBgn0040002	FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300	1	4	5	80	2R	19474	19550	AATCACTTCAGTTGAGGTGG		59	19590	19611	CAGTCTAAATCAAGGAGATCGT		59	NA	
Drosophila melanogaster	50	l(2)k14505	FBgn0021856	FBtr0081482	2	1	1	114	2L	21261706	21261781	TCTTCCAGTACGATGACGA		59	21261859	21261877	ATGTTCATGGTCTTCTGCA		59	NA	
Drosophila melanogaster	50	Nhe2	FBgn0040297	FBtr0081467,FBtr0081466	2	2	2	80	2L	21121223	21121588	CAGAGATCTTAAGGGAGCTG		59	21121629	21121649	CTCATAACTTCCATAGCATCG		58	NA	
Drosophila melanogaster	50	fbp	FBgn0032820	FBtr0081321,FBtr0081322	1	2	2	80	2L	19762535	19762556	TCCTATACCACATGTCTAATGG		58	19762294	19762496	GATGTATTTGCCCTGTTTCTC		59	NA	
Drosophila melanogaster	50	CG10237	FBgn0032783	FBtr0081207,FBtr0081209,FBtr0081208	3	3	3	93	2L	19437120	19437677	GTCTTCTAGAAGCGGAGAC		59	19437045	19437063	CTTTCCGGGTAATACTTGC		58	NA	
Drosophila melanogaster	50	Catsup	FBgn0002022	FBtr0081143	3	1	1	60	2L	19043010	19043029	CCACTATCACTATTCTGCTG		57	19043051	19043070	ATAAGAATGGCAAAGTCACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hk	FBgn0001202	FBtr0081180	3	1	1	78	2L	19032465	19032484	AACAAGATACCGATCTGCTG		59	19032353	19032371	TTCAGTGTGGTCACTTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31788	FBgn0051788	FBtr0081056	3	1	1	66	2L	18257754	18257772	GAGTCTTTCGATTGGACCT		58	18257706	18257724	TTACTACACGCTGTTTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TepI	FBgn0041183	FBtr0080811	1	1	1	81	2L	15891398	15891416	GTGATCCTAACAAATGCGA		57	15891219	15891301	CAGTACAATTAGTGTAACCAGG		58	NA	
Drosophila melanogaster	50	CG15254	FBgn0028949	FBtr0080783	1	1	1	60	2L	15614166	15614185	ACAAGTACGACAATGAAACC		58	15614125	15614146	AGTACACTGGAGTAATCATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34165	FBgn0085194	FBtr0112356	2	1	1	102	2L	14714007	14714025	GAACGATTTGAAGGTGGTC		58	14714091	14714109	CTCTGAAGATGACACCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16885	FBgn0032538	FBtr0080558	2	1	2	164	2L	13933467	13933485	CACCTATCCCGTTAAGGTG		59	13933321	13933339	GTGTAGGGACGATCAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31814	FBgn0051814	FBtr0080580	2	1	1	80	2L	13684543	13687536	GATATGATCATATCGGACACCT		59	13684484	13684503	CATGTACTTTGTGTAACCGC		59	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090023,FBtr0090026,FBtr0090022,FBtr0090029,FBtr0090025,FBtr0090014,FBtr0090024	3	8	17	186	2L	12724032	12724051	CGTGTTAAGTTGATGAACGA		58	12724335	12724774	CTAATGAAACCAGGAACGG		58	NA	
Drosophila melanogaster	50	CG31704	FBgn0051704	FBtr0080273	2	1	1	71	2L	11840775	11840793	GTATTCCAGTACTCCTGCC		59	11840828	11840846	ACTATAGGTCACGGAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16833	FBgn0026147	FBtr0080151,FBtr0080152,FBtr0080150	3	3	3	81	2L	10992858	10992876	GGTTACATCAGTGAATCCC		57	10992920	10993011	TTTAGCGCTGTACTTTACTG		57	NA	
Drosophila melanogaster	50	CG33129	FBgn0053129	FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172	1	4	4	118	2L	10966083	10966101	GATCAAGACCACCTGTGAC		59	10965901	10966002	ATTGGTCAATGAACTTTGCC		59	NA	
Drosophila melanogaster	50	rho-5	FBgn0041723	FBtr0089855	1	1	1	89	2L	10369522	10369601	TGTGCTCTCAGATATCGTG		58	10369451	10369469	TGAGCAATCGGTATAGCTG		59	NA	
Drosophila melanogaster	50	CG31709	FBgn0051709	FBtr0079856	1	1	1	80	2L	9579139	9579158	GACTTACTACAGGGAACAGG		59	9579017	9579099	CTAAGCTTAAATAATACCGCCC		58	NA	
Drosophila melanogaster	50	Oatp30B	FBgn0032123	FBtr0079827,FBtr0079828,FBtr0079826,FBtr0079825	2	4	4	83	2L	9537728	9537811	GCATATGGATTATTGCTACGAC		59	9537854	9537873	TTCTTAGACTTGGTCTGTGG		58	NA	
Drosophila melanogaster	50	CG34182	FBgn0085211	FBtr0112375	1	1	1	60	2L	9437055	9437073	CCCAAGATGCAATTCATGC		59	9437097	9437115	AATCCACGATATCTCCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL51	FBgn0032053	FBtr0079696	1	1	1	60	2L	8516806	8516827	ATCCTCTACTTGTACAAGTTCC		59	8516767	8516786	TTTACTGATGTGAATAGCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fu12	FBgn0026718	FBtr0079704,FBtr0079703	1	2	2	61	2L	8450266	8450284	CTCATTCATGGATGACGAG		57	8450223	8450241	GTAGGATGTGGATTAGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Akap200	FBgn0027932	FBtr0079666,FBtr0079665	2	2	4	70	2L	8428059	8430290	CAAATTGAGGTGGATCTCG		58	8430324	8430342	TCCTGTGTTGTAACGTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Acp29AB	FBgn0015583	FBtr0079716	3	1	1	62	2L	8392868	8392886	TCAAGATGAGACGATTCGA		58	8392824	8392845	GCATTAGATTCTTCTCGATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8360	FBgn0032001	FBtr0089935	3	1	1	151	2L	8213438	8213456	GATGGCACCATATACTCCG		59	8213822	8213840	GTGAAGCCATTATCCTGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cka	FBgn0044323	FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538	2	4	4	99	2L	8036253	8036272	AACATCAATGGAAACGAGAG		58	8036391	8036411	CCACGATTATTTCATCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Slob	FBgn0024290	FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518	2	4	4	80	2L	7649009	7649027	TGAGGACTTAGTCCTTTGC		58	7648879	7648968	GGCTTAATTGTACTGAAACAGG		59	NA	
Drosophila melanogaster	50	Rapgap1	FBgn0085403	FBtr0112604,FBtr0112605,FBtr0112603,FBtr0112606	1	4	4	93	2L	7499876	7499897	GGATAAATTCAGTGTGAACACG		59	7499746	7499824	ACTGCAGGTATTTAGATTGGG		59	NA	
Drosophila melanogaster	50	osm-6	FBgn0031829	FBtr0079333	1	1	1	125	2L	6556352	6556426	TCAATGATGTGGAGCTGAG		59	6556245	6556264	CAAACATCTGCTTGAAGTCC		59	NA	
Drosophila melanogaster	50	Hsp60C	FBgn0031728	FBtr0079111,FBtr0079112,FBtr0079110	1	3	3	60	2L	5669869	5669887	CAATCGCAAGGAGAATCTG		58	5669911	5669929	GTCTCCAAACACGATTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hoe1	FBgn0041150	FBtr0077395,FBtr0077398,FBtr0077397,FBtr0077399,FBtr0077400,FBtr0077396	2	6	6	106	2L	4909615	4909687	CATTCTATGGGTTTCCGCT		59	4909527	4909546	GATTCAAGGTGCTATTCTGC		58	NA	
Drosophila melanogaster	50	morgue	FBgn0027609	FBtr0077457	3	1	1	61	2L	4443364	4443384	CTGTTCATATACTTCCCGGAG		59	4443323	4443341	TTGGTGAGGAAACGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	morgue	FBgn0027609	FBtr0077457	1	1	1	60	2L	4443364	4443383	TGTTCATATACTTCCCGGAG		58	4443323	4443341	TTGGTGAGGAAACGTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Shaw	FBgn0003386	FBtr0089274,FBtr0089275	1	2	2	80	2L	3721575	3721650	GCTCAACTATTACAGAACTGG		58	3721692	3721710	CAGAACTCCAATTCCTCCT		58	NA	
Drosophila melanogaster	50	drm	FBgn0024244	FBtr0077531,FBtr0077530	3	2	2	79	2L	3545739	3545757	TGAGATCACCTATTCGTGC		59	3545800	3546741	ACTGACTACATCTGTGCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Rbp9	FBgn0010263	FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635	2	7	7	83	2L	2963121	2963234	CAATCTGTTAAGGTGATTCGTG		59	2963278	2963296	AGCCTCTTCGTAATTCGTC		59	NA	
Drosophila melanogaster	50	CG18557	FBgn0031470	FBtr0077689	2	1	1	61	2L	2845571	2845589	GAATGCTATTTCTTGGCCG		59	2845528	2845546	TTTGAGAACTGTGACAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15394	FBgn0031439	FBtr0113016	1	1	1	73	2L	2592183	2592201	ATTTCTGTTCATGTGGGCT		59	2592297	2592315	TTACGTACGAGGTCTTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	lea	FBgn0002543	FBtr0077941	2	1	1	101	2L	1397132	1397150	TTCAATGGTTTAAGGACGG		57	1395993	1397067	GTGAGTGGATAACCTTGAG		57	NA	
Drosophila melanogaster	50	Tgt	FBgn0031321	FBtr0077971	3	1	1	67	2L	1184463	1184481	TCGAGACACTGAAGAAAGC		59	1184512	1184530	ATCTGTTAGAATGGCCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437	3	6	10	141	2L	110859	110877	TATGATGACTCCTCCAAGG		57	112011	112699	ACATGATACCCTGATCTCC		57	NA	
Drosophila melanogaster	50	l(1)G0196	FBgn0027279	FBtr0077355,FBtr0077356,FBtr0112508,FBtr0077357,FBtr0077354	3	5	5	83	X	21898310	21898330	CATATTTCGGTGCATGTATCC		59	21898374	21898508	GAGTGCAATCTTAGCAAACC		59	NA	
Drosophila melanogaster	50	para	FBgn0003036	FBtr0111022,FBtr0074298,FBtr0111023	2	3	3	80	X	16407799	16407817	TCATCACCACAATTCTCGT		58	16403727	16407756	TGAATATCACCTCAGTGGAC		58	NA	
Drosophila melanogaster	50	l(1)G0168	FBgn0027287	FBtr0074042,FBtr0074043	2	2	2	84	X	15401623	15403765	GAAGTGGAGAGCCTAAAGG		59	15403813	15403831	TGTCAATCTTGTCCGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	LIMK1	FBgn0041203	FBtr0073660	2	1	3	87	X	12483191	12483299	GCGCCTTATAGAATTGATGTG		59	12483124	12483143	ACGAATCACTAACTGGTGTG		59	NA	
Drosophila melanogaster	50	Gr10b	FBgn0030297	FBtr0073550	3	1	1	88	X	11306093	11306209	TACAGACAGTGGGAAATGTC		59	11306024	11306043	ATATCCATTCGAAACATGCC		58	NA	Nonspecific
Drosophila melanogaster	50	dlg1	FBgn0001624	FBtr0073483,FBtr0073492,FBtr0073491	2	3	12	180	X	11276005	11281814	ATAGCTGATAATCAGCGCA		58	11281958	11282028	GTATCTGTGAAGTCTGGGA		57	NA	
Drosophila melanogaster	50	CG12645	FBgn0030181	FBtr0112973	3	1	2	212	X	10047978	10048055	GATTTCTTTATCCTAAGCCCG		58	10048463	10048481	GTAATGATTCGTTGTCCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34028	FBgn0054028	FBtr0100083	1	1	1	60	X	9405636	9405726	GTAAACAAACGTGGACATATCG		59	9405746	9405765	AACGATTCATTATTGGTCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sn	FBgn0003447	FBtr0071101,FBtr0071100,FBtr0071102	3	3	3	84	X	7879377	7879472	GGATCTGCATAAGATCGCA		59	7879520	7879538	GAATCGGTTCCATCATCCA		59	NA	
Drosophila melanogaster	50	hdm	FBgn0029977	FBtr0071133	1	1	1	88	X	7813103	7813124	CATACATCAGTTTACTGCAGTG		59	7812933	7813054	CAATGCACTTCCTGTTGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cdk7	FBgn0015617	FBtr0070756	2	1	1	129	X	5202772	5202862	GTTTGCCACAGTTTACAAGG		59	5202662	5202680	TATCTTGATCTCACGCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3071	FBgn0023527	FBtr0070398	3	1	1	133	X	2157021	2157108	GAAACCAGAACTACTCAAGG		57	2157204	2157222	TCTTTACCACAAGCATGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40856	FBgn0085526	FBtr0113939	2	1	1	74	U	9226990	9227008	CGACGTTGAATTATCCGTC		58	9227046	9227064	GATAAATCTACCGCTGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17691	FBgn0039993	FBtr0113758	3	1	4	90	U	1179200	1179275	GGTGTTCAGTAAATCTACGG		57	1179328	1179346	TAAATAACGTACCCTGCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41053	FBgn0069960	FBtr0113978	2	1	1	83	U	641843	641861	ATATACGAAGGCGATCGAG		58	641608	641797	TTCTCTTTCGTTCCTACTGC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Caps	FBgn0053653	FBtr0091630,FBtr0091631,FBtr0091632	2	3	3	80	4	1247313	1247331	ATCTGGTGCATCATCACAG		59	1247372	1247459	ATCTCAGGTAAAGATCTGACAC		59	NA	
Drosophila melanogaster	50	CG7920	FBgn0039737	FBtr0085604	2	1	2	213	3R	25840613	25840631	CAACTACTTCACCTACGTG		57	25840418	25840436	ACCGAAAGATTGCAAACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	spz	FBgn0003495	FBtr0085140	1	1	12	88	3R	22893080	22893101	GTCAGCATCTAATCACTTACAG		58	22892194	22892339	AGACAAAGGTATCCGATGG		58	NA	
Drosophila melanogaster	50	CG31140	FBgn0051140	FBtr0113393,FBtr0084497,FBtr0113392,FBtr0084498,FBtr0084499	3	5	5	81	3R	19792355	19792373	AAGCCAACATACTGTCACC		59	19792417	19798181	TAAAGTTGCAAACTTCGCAG		59	NA	
Drosophila melanogaster	50	CG6660	FBgn0039030	FBtr0084338	3	1	1	71	3R	18749517	18749535	ATGAAGACATTGTACGCCT		58	18749570	18749650	TATGAATACCGTGTCGAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5630	FBgn0038842	FBtr0113257,FBtr0083979	3	2	2	101	3R	16751961	16752071	CAGCGAGGATTATGATCCA		58	16752136	16752154	TCTGTTCCAGTTACTTGCT		58	NA	
Drosophila melanogaster	50	CG17838	FBgn0038826	FBtr0083962,FBtr0113256,FBtr0113255,FBtr0083959,FBtr0083960,FBtr0083963,FBtr0083958,FBtr0083961	3	8	8	135	3R	16622986	16623073	CAGGAAGAATTAAGGTTTGGG		58	16623170	16623188	TTATCCTCTGAGACGTCCT		58	NA	
Drosophila melanogaster	50	FK506-bp1	FBgn0013269	FBtr0083120	1	1	1	289	3R	11158533	11158735	GGTTTGAACATGAAGCCTG		59	11158195	11158214	GTCATTTGATCGTCATCCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4210	FBgn0038302	FBtr0083049	2	1	2	80	3R	11039936	11040025	AGAGGAAGATCTTAAACGAGAC		59	11040065	11040084	GTATCGTTGTCTACAAGCAC		58	NA	
Drosophila melanogaster	50	NK7.1	FBgn0024321	FBtr0082941,FBtr0082942	1	2	2	81	3R	10167297	10169958	CTACCAAGAAGGAAAGTTCTG		58	10167236	10167254	CTGATATCCGGTGGTAGAG		58	NA	
Drosophila melanogaster	50	CG34383	FBgn0085412	FBtr0112622,FBtr0112621,FBtr0112624,FBtr0112623	3	4	4	134	3R	9583496	9584190	GAACTCTAAGAAACTGGAGCA		59	9584286	9584304	TTGATGTGAGAGCCATCAC		59	NA	
Drosophila melanogaster	50	Men	FBgn0002719	FBtr0082660,FBtr0082661	1	2	2	197	3R	8539869	8539943	CATCTGGATGGTGGATAGC		59	8539690	8539708	ATCAGCTCAAGGATCTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	glo	FBgn0037954	FBtr0089918	2	1	3	289	3R	7644430	7644448	AATGTGACTAATGGCTCGG		59	7642476	7643743	ATACCAGAGAAGAACTCCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5276	FBgn0037900	FBtr0082390	2	1	1	81	3R	7258583	7258601	TACATGATCCACGAGAGTG		58	7258646	7258718	ATTTCTCTTTCGAACACCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082207,FBtr0082209,FBtr0082206,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210,FBtr0082208	3	8	8	178	3R	5845148	5845239	TATCAATCGCTATCGTCCT		57	5844988	5845006	AATAGTTGAGCCAGATTCG		57	NA	
Drosophila melanogaster	50	Hdac3	FBgn0025825	FBtr0078767	1	1	1	162	3R	1299663	1299750	CATTCAGTGCAATTCCGTG		59	1299519	1299537	TATGCATATGTCGCTGTGG		59	NA	
Drosophila melanogaster	50	CG14640	FBgn0037227	FBtr0078976	2	1	1	60	3R	80515	80592	TTGTCCTATGCCTTTGCTC		59	80615	80634	CCAGGGTTATAGTTGTAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr78E	FBgn0037114	FBtr0078463	1	1	1	138	3L	21659967	21660051	TAAGATTCTCATCGTCGCC		59	21659847	21659865	GTTGTACGATCCATCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ilk	FBgn0028427	FBtr0078305	2	1	1	169	3L	21211281	21211299	GTGGTAGCTAAGATCCTGG		58	21211432	21211512	GAACGTGGCATAAACTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Ac76E	FBgn0004852	FBtr0074897	2	1	1	97	3L	19967922	19968001	CATTAACAAGATTCTGCTGGAG		59	19968059	19968077	AGTAGCTCTCGTGGTAGAG		59	NA	
Drosophila melanogaster	50	CG6485	FBgn0036706	FBtr0075249	2	1	1	60	3L	17313561	17313581	CGAGACCATCAAGATAGATCC		59	17313521	17313539	GAACATGGTGTAGAACTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PGRP-SB2	FBgn0043577	FBtr0075320	1	1	1	89	3L	16720010	16720088	GACTGGATTACCTCCTTCG		59	16720141	16720159	GAATAGTTGGGCGAAACCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13056	FBgn0040794	FBtr0075376	1	1	1	75	3L	16326437	16326526	GTCACAGAGAATGTACTTATCC		58	16326562	16326580	ATACAATTGCAGATCGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5284	FBgn0036566	FBtr0075444,FBtr0075445	1	2	2	81	3L	16087581	16087599	TATCCGTTCCTAGACAGCA		59	16087644	16087720	AAGTTTCATTCCGCTTTGG		58	NA	
Drosophila melanogaster	50	CG17032	FBgn0036547	FBtr0075511	3	1	1	118	3L	15952474	15952796	GATGATTTGCCTTCCAAGG		58	15952877	15952896	GATATTTGATCCAGGACCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CkIIalpha-i1	FBgn0015025	FBtr0075504	2	1	1	136	3L	15810266	15810343	AAATTGATGCTGCTATCCTG		58	15810442	15810460	GTCTATTTCGATGGGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7272	FBgn0036501	FBtr0075548	3	1	1	85	3L	15496314	15496334	CCATCTCCATCAAGAATACTG		57	15496446	15496464	AATAGCGAACATGGAGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10133	FBgn0036366	FBtr0075825	3	1	1	60	3L	13442727	13442746	GAGGAATTTACCCTACAGGC		59	13442686	13442706	GGTTCAATGTAGAACTGACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11529	FBgn0036264	FBtr0076005	1	1	1	60	3L	12191201	12191220	CAAACGTTGGATCCTAACAG		58	12191243	12191261	ATACACATCGTAGTGGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34239	FBgn0085268	FBtr0112433	1	1	1	85	3L	11033835	11034041	AGAATCCGCTGAAAGTGAC		59	11033768	11033786	CTTGAGGTCTTCCAAGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32036	FBgn0052036	FBtr0114525	3	1	1	75	3L	9481335	9481413	TTTACCACTTGAATGCCGA		59	9481278	9481296	TTTGCATAAGGTTCCAGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hsp22	FBgn0001223	FBtr0100558	3	1	2	62	3L	9366420	9366507	AATGTGGTGATCTACAAAGG		57	9366532	9366550	TTATCGTCAAAGTCCCTCC		58	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	desert	FBgn0040229	FBtr0076575,FBtr0113320	3	2	2	76	3L	8747582	8752434	CCTACCGCAGTTATACACC		59	8752474	8752551	GGAGGTTCCATACGTTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	desert	FBgn0040229	FBtr0076575,FBtr0113320	1	2	2	74	3L	8747584	8752436	TACCGCAGTTATACACCCT		59	8752474	8752551	GGAGGTTCCATACGTTGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Atg18	FBgn0035850	FBtr0076693,FBtr0076692,FBtr0076691	1	3	3	124	3L	8181566	8181584	AATATCTGGTGTCCAGCTC		58	8181672	8182396	AAACGAGTAACCCATCCAG		59	NA	Nonspecific
Drosophila melanogaster	50	sphinx2	FBgn0052382	FBtr0076864	2	1	1	63	3L	7433754	7433826	TTGTTGTGGCATTGATCAC		58	7433709	7433733	CCAACTAGGTAGATGATTGTATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33523	FBgn0053523	FBtr0091478,FBtr0091477,FBtr0091475	3	3	4	94	3L	5921731	5921813	GACGTACAAGATCCAAACCA		59	5921870	5921888	ATATGTTGATGGTGGCCTC		59	NA	
Drosophila melanogaster	50	kst	FBgn0004167	FBtr0112840,FBtr0073070,FBtr0073072,FBtr0073071	3	4	4	82	3L	3365741	3365818	AGTCCATGAAGCAACAGTC		59	3365862	3365882	TGAGTTACGAGAACTAACTGG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-1389b	FBgn0083045	FBtr0113526	3	1	1	61	2R	17221730	17221749	TTCGTATGAGGCTTTCAGAC		59	17221773	17221791	TGAGTGATACAATCGTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nplp1	FBgn0035092	FBtr0072443	1	1	2	82	2R	20925036	20926574	CAGAGAAGCGATTCCTAGG		59	20926620	20926638	AAACACTGCTTACAAACGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	enok	FBgn0034975	FBtr0072250	1	1	1	176	2R	19988263	19988340	ACAGGTGTAAGACATGCTC		59	19988540	19988558	AAAGTTTCGAGGTCGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tal	FBgn0023477	FBtr0072141	1	1	1	256	2R	19828049	19828598	GCCATCAACATCTATAAGCC		58	19828876	19828894	CTCTTCTTGGTGTCGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gr59e	FBgn0041233	FBtr0072115	2	1	1	264	2R	19428883	19428968	AGAAATGTAACCTTTGCCAG		58	19428578	19428596	CAAACGTAAACCCAATTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3295	FBgn0034573	FBtr0071547	3	1	1	62	2R	16903820	16903838	CCTTACAAGCACTTCTTGG		58	16903776	16903797	GTCTTTGAGGAATATGAACGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18538	FBgn0034324	FBtr0086760	2	1	1	66	2R	14184840	14184913	TGATGAAACCATGGTACGT		58	14184943	14184961	TTGTAGTCGCTGACATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	1	5	7	80	2R	11836644	11836723	CATTTGCTACGTGCTACTC		58	11836582	11836603	GCTCTAGTTATATTCGAGAAGG		57	NA	
Drosophila melanogaster	50	AttA	FBgn0012042	FBtr0087437	2	1	1	263	2R	10634904	10634922	CACAAGCATCCTAATCGTG		58	10635149	10635231	TGACCAGCATTGTTGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6337	FBgn0033873	FBtr0087646	2	1	1	74	2R	9722351	9722490	GGACTTTCAAACTTACGAGG		58	9722296	9722314	TAGTAGTTGGCGAAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8830	FBgn0033738	FBtr0087950,FBtr0087951	3	2	2	72	2R	8321598	8321617	ATGAATAGCGTACTTCAGGC		59	8321287	8321305	AATTGCACTCGATAAGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33012	FBgn0053012	FBtr0087909,FBtr0087910	3	2	2	80	2R	8256395	8256468	GTATGATACAGAGGCTCACTC		59	8256510	8256528	GACTCCGTGTAGTAAACGA		58	NA	
Drosophila melanogaster	50	Vps25	FBgn0022027	FBtr0088694	3	1	1	63	2R	4513070	4513140	CCCTTCTTTACACTACAGC		57	4513167	4513185	GATCTGTCCAGACCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)01289	FBgn0010482	FBtr0110900,FBtr0086137,FBtr0110901	3	3	4	97	2R	2610315	2610335	TTCATATGGTCAAGATCCAGG		59	2610181	2610259	CAGTAATGGGTTTCCATTTCTG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-525h	FBgn0083031	FBtr0113551	1	1	1	60	2L	20421341	20421361	GAATTGTGTCTCAAATGCTCC		59	20421382	20421401	TTGATTATTCAGGATGCCGT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	tsh	FBgn0003866	FBtr0085907,FBtr0085906	2	2	2	69	2L	21836641	21836835	GGATAGAAATCAGAAAGCGC		59	21836867	21836885	GTTCAATCTCCGATCAGCA		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Syx5	FBgn0011708	FBtr0080831	2	1	2	82	2L	16308250	16308268	CTCGGAGTTCATGATGGTC		59	16308314	16308400	CCAACATTGTGAGCTTCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31765	FBgn0051765	FBtr0080584	2	1	1	249	2L	13961720	13961738	ACTGGTCAGCATAATGCTC		59	13961951	13962136	ATATAGCTCTGGTTGTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5122	FBgn0032471	FBtr0080431	3	1	1	122	2L	13133716	13133735	TTCAGCTGATAGTCAATCCA		58	13133820	13133896	CATAGTTTGGCTCAGTGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33305	FBgn0032351	FBtr0080221	1	1	1	60	2L	11159714	11159882	CATGTCCAGACCTTTAGGT		58	11159672	11159690	CACGGGTGCTCTATTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eEF1delta	FBgn0032198	FBtr0079952	2	1	2	88	2L	10233559	10233772	AAGATCGATGGCGTTACTC		59	10233824	10233842	TTCAACTCCTTGTGTTCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG4036	FBgn0032149	FBtr0079870	2	1	1	62	2L	9791681	9791760	ATACCTATGCCAAACCTCTC		58	9791785	9791803	ATGCTCAAACTGGTACCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	jp	FBgn0032129	FBtr0113030,FBtr0079861,FBtr0079860	3	3	3	95	2L	9549654	9550211	AGGTTAAGGACTGGTTTGTG		59	9549578	9549596	GCTAGGTGAGCATGTAGAC		59	NA	
Drosophila melanogaster	50	CG13792	FBgn0031927	FBtr0079520	3	1	1	60	2L	7645545	7645563	GTGCAACTACAAGAACTCG		58	7645503	7645522	ATACTTGAGACACTTGAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kr-h2	FBgn0028419	FBtr0079192	2	1	1	144	2L	6072542	6072560	GCAGCAATCTCAATCACAG		59	6072667	6072743	CTGTTGTGAGGTAAAGATGG		58	NA	
Drosophila melanogaster	50	odd	FBgn0002985	FBtr0077557	3	1	1	61	2L	3606296	3606314	TGACGAGCTCAACTTAAGC		59	3606067	3606088	CCTTGATCACTATGAAATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3246	FBgn0031538	FBtr0077572	1	1	1	100	2L	3461370	3461446	GAAATGAGATTCAACGGTGG		59	3461289	3461307	ACTGTAAAGGGTCCATTGG		59	NA	
Drosophila melanogaster	50	CG14343	FBgn0031325	FBtr0077975	1	1	1	60	2L	1219863	1219882	AGTATTGGAACCTGCATACC		59	1219905	1219923	CAGACATCCATCGACTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nle	FBgn0021874	FBtr0078075	2	1	1	157	2L	567211	567229	CAGCTGATGGAATCTTGTG		58	567014	567090	TTCCTGCAATTCCTCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me28S-G3113b	FBgn0086064	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:U76:54Eb	FBgn0063376	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG12061	FBgn0040031	FBtr0113683,FBtr0113682	1	2	3	132	XHet	23149	23167	TATGTGTTGTGGGATTCGT		58	23261	24999	CGTGTTCATTCTTCTTACGTC		59	NA	
Drosophila melanogaster	50	CG32523	FBgn0052523	FBtr0077183	1	1	1	60	X	21089562	21089580	CGCTGGATGTTCTACTCTC		59	21089604	21089622	TATTCTTGGAATGCAGCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1835	FBgn0031127	FBtr0077277	1	1	2	176	X	20540413	20540431	TAAGGAGCTTGCCTTTGAG		59	20540635	20540653	ATTACACGCATTTACACGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG1631	FBgn0031101	FBtr0077297	3	1	1	60	X	20198679	20198697	GACGTTTCGGATATTTCCA		57	20198720	20198739	TATCGCTAGTATAGTCGTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32556	FBgn0052556	FBtr0074477,FBtr0074478	3	2	2	97	X	17568322	17568340	AATCACTACGAACGACGAC		59	17568179	17568197	TCGTAGTAGTCATCCTCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Nup153	FBgn0061200	FBtr0113475,FBtr0074284	1	2	2	60	X	16494295	16494313	GGAAGAGGATGAATCCTCG		59	16494337	16494421	CATGATGGAGTTGTTGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8260	FBgn0030684	FBtr0074088,FBtr0074089	3	2	2	60	X	15650647	15650666	AGTATACGAACACTGAAGGA		57	15650689	15650707	CTTCGTGGTCTATTTCGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3638	FBgn0026875	FBtr0070248,FBtr0070246,FBtr0070247	1	3	4	168	X	1120310	1120891	CATCGAGTTGCAAAGTCTG		59	1120160	1120178	CATCAGCGTAATGATGACC		58	NA	
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451	2	4	8	95	4	159114	159132	AAGCGGCTAAAGACTAGTG		59	159190	160904	AGTACCAGTCTTGTCAAAGC		59	NA	
Drosophila melanogaster	50	cenB1A	FBgn0039056	FBtr0084368	1	1	2	80	3R	18946207	18946226	TCTACAACAGCACTTTCTCG		59	18946269	18946349	TTGTTCATCTCCTGGAAGC		59	NA	
Drosophila melanogaster	50	CG17274	FBgn0038835	FBtr0083989	1	1	2	85	3R	16679653	16679671	GATCTCCGATGAGGAATGG		59	16679380	16679607	TCAGGAATTCCTTCATGTACTC		59	NA	
Drosophila melanogaster	50	pr-set7	FBgn0011474	FBtr0082929,FBtr0082928,FBtr0082930	2	3	3	146	3R	10142453	10142471	AAATCTGCTGGAGGATCAG		59	10142581	10142670	AAGGGAACTCCTATTGTGC		59	NA	
Drosophila melanogaster	50	CG14736	FBgn0037986	FBtr0089692,FBtr0089691	3	2	3	80	3R	7866655	7866732	AGGTCGTCTTAGGAAAGGT		59	7866773	7866794	ATATCTACTCTGTGAGTCTCGT		59	NA	
Drosophila melanogaster	50	CG34287	FBgn0085316	FBtr0112483	3	1	1	60	3R	1679437	1679456	ATTTCCGAATTCTGAAGGAC		57	1679479	1679497	TAATCGTTCATGTACACCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078673,FBtr0078676	3	2	5	87	3R	1587421	1587439	TTCATTAGCTGGAAGAGCG		59	1586949	1587373	ATGTACATACCCAGTTATGTCC		59	NA	
Drosophila melanogaster	50	AP-2	FBgn0023417	FBtr0078419,FBtr0078418	1	2	2	221	3L	21602979	21604253	GACATGTCACCCAATTGTC		58	21604438	21605100	TCATGCTCTTTATGAGCGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0075438,FBtr0112850,FBtr0075439	2	3	6	84	3L	16070897	16073864	AGAAGAGCTCAAGCAACTC		59	16073909	16073930	GCTAATTACTCTAATCAACGCG		59	NA	
Drosophila melanogaster	50	comm2	FBgn0041160	FBtr0075580	2	1	1	60	3L	15692582	15692602	GATTTCCTGAAACAGATTGGC		59	15692542	15692561	GATGCTGATGTTTCAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32082	FBgn0052082	FBtr0076216,FBtr0113423,FBtr0113422	2	3	3	87	3L	11152075	11152404	GCTACAAGAATGCCATGAC		58	11152455	11152473	TAGACCATCCAGTGTTTGG		58	NA	
Drosophila melanogaster	50	CG32052	FBgn0044328	FBtr0076330	2	1	1	83	3L	9798476	9799012	ACAGGAAACGGTATACATCG		59	9799058	9799076	AAAGTCAACTGGTTGTGCT		59	NA	
Drosophila melanogaster	50	pall	FBgn0036005	FBtr0076471	1	1	1	86	3L	9480579	9480597	AGATCATTATGGCCCATGC		59	9480442	9480529	ATAGAATGTGGTTCCTGCG		59	NA	
Drosophila melanogaster	50	CG1140	FBgn0035298	FBtr0072843,FBtr0072844	2	2	2	83	3L	1966297	1966373	GATGATTCCTGGCAAACTG		58	1966420	1966438	ATGGTGATGATCACCTTGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Or59c	FBgn0034866	FBtr0072020	3	1	1	60	2R	19360472	19360491	AGTGTTCATCTCCTTGTTCC		59	19360431	19360450	CAGATTAGCTATGCGATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10543	FBgn0034570	FBtr0071524	2	1	3	174	2R	16889924	16890006	CATCACCTAAGTAGCAGCA		59	16890144	16890162	TGGGAATATGGTCTGATGG		58	NA	
Drosophila melanogaster	50	sano	FBgn0034408	FBtr0086567,FBtr0086569,FBtr0086566,FBtr0086568	2	4	4	271	2R	14844989	14845235	TCACATCAGGTACAAGAGTC		58	14845469	14845487	TATTGCTACTGGAACTCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5189	FBgn0034350	FBtr0086694	1	1	1	229	2R	14334286	14334304	GAGCTCTATTGGCCTACTC		58	14334564	14334582	CTTCAGAAGACCCAATCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mus210	FBgn0004698	FBtr0087373,FBtr0087374	1	2	3	111	2R	11200223	11200241	AAGTCAACGCGAATAAAGC		59	11200316	11202134	ATAGATCTGCATCTGCCAC		59	NA	Nonspecific
Drosophila melanogaster	50	CG7881	FBgn0033048	FBtr0086033	3	1	1	108	2R	1850680	1850698	CTTATTCTTGGCCATCGTC		58	1850528	1850608	GTTGTACTCAGGAAAGTCC		57	NA	
Drosophila melanogaster	50	CG10947	FBgn0032857	FBtr0081368,FBtr0081369,FBtr0081370	3	3	3	61	2L	20386716	20386734	GATATCGGTGGAGAACGTG		59	20386673	20386691	ACTTGGTATAGCAGCTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13077	FBgn0032810	FBtr0081257	2	1	1	290	2L	19566372	19566391	TATTTCCTATCTCACGCTGC		59	19566995	19567013	AGAATGCACAGTACGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6115	FBgn0040985	FBtr0080959	2	1	1	80	2L	16887794	16887812	TCATTAGCCTCTACAAGCA		57	16887617	16887635	TCTGCTTCCTGAACTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31781	FBgn0051781	FBtr0080922	3	1	1	169	2L	16877991	16878010	ACCAATCACCAATCAAATCG		58	16878141	16878160	CATGTGACTTACGACTAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sop2	FBgn0001961	FBtr0080570,FBtr0080569	3	2	2	60	2L	13828454	13828473	GATAAGTCGCAGAAGAAGGA		59	13828413	13828432	CCATCGACTGAAAGATTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ca-beta	FBgn0015608	FBtr0080218,FBtr0080217,FBtr0080220,FBtr0080219	2	4	4	118	2L	11165818	11165836	ACAATAACTGGTGGATCGG		59	11165652	11165670	ATACAGTCTTGAGGGTCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	nmd	FBgn0005322	FBtr0080065	1	1	1	60	2L	10303776	10303795	GCAGATATTCCAGGTACTGG		59	10303735	10303756	CACCGAATAATATGTGATCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SP555	FBgn0040280	FBtr0079004	1	1	2	162	2L	5039884	5039902	GAGTTCGTCAACCTACAGG		59	5040120	5040138	ACATCTCCAGCTGATTCAC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Rbp9	FBgn0010263	FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635	3	7	7	84	2L	2963121	2963234	CAATCTGTTAAGGTGATTCGTG		59	2963279	2963297	CAGCCTCTTCGTAATTCGT		59	NA	
Drosophila melanogaster	50	CG34144	FBgn0083980	FBtr0110988	1	1	1	273	X	11192128	11192146	TAATAACCACCACAACAGC		57	11191405	11191891	AAGTTTGATGAAGGTCCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	bxd	FBgn0020556	FBtr0083343	2	1	4	93	3R	12571211	12571230	CAATATGCTTCGGTAATCGT		58	12570416	12571155	ATGGGAAGTGATAATGTGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11315	FBgn0039801	FBtr0085721	2	1	2	216	3R	26571860	26571878	CTGCTCGATTAGTCAGGTG		59	26571581	26571680	GATGGTGTATGGATTGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	veli	FBgn0039269	FBtr0084788	3	1	2	82	3R	20890640	20890658	AATAATACCTGGAGGCGTG		59	20890506	20890594	CTCTTACCACACCATTCAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	cher	FBgn0014141	FBtr0089473,FBtr0089472,FBtr0089474,FBtr0089471	3	4	4	153	3R	12920452	12920470	TGAAGTCAGAATGCCTAGC		59	12920254	12920335	TTTGAAGGGAGATCCTTGC		59	NA	
Drosophila melanogaster	50	p	FBgn0086679	FBtr0081887	3	1	1	282	3R	4488690	4488786	AACAAATTGGTAACCGTCC		58	4488426	4488445	CTTTGTACCTTTGCGAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14662	FBgn0037291	FBtr0078846	3	1	1	61	3R	808373	808393	CTGATTCAGGGAAGATTTGAG		58	808098	808350	ATAGTAGCAATCGGACCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MESR6	FBgn0036846	FBtr0075026	3	1	1	220	3L	19086205	19086224	TCTTTATCGTCGACTACCAC		58	19086407	19086767	ATGTCCTGCATAAAGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6018	FBgn0034736	FBtr0071835	2	1	1	60	2R	18438339	18438357	GGACTGAAGGACCAAATCC		59	18438378	18438399	CATTGAAACTGGCTATGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9000	FBgn0034176	FBtr0087059	1	1	1	61	2R	12889303	12889321	TCGTAGTCATCGAGAATGC		59	12889109	12889278	TTGGTACACTTTCACCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sema-2a	FBgn0011260	FBtr0087089,FBtr0087090,FBtr0087091,FBtr0087088	1	4	4	90	2R	12416665	12416686	CTGATCTGTATAATACTTCGGC		58	12416737	12416873	AAGTTTGGTTTGTCCAACC		58	NA	
Drosophila melanogaster	50	CG8155	FBgn0034009	FBtr0087391	1	1	1	93	2R	11207995	11208071	GGAATTCGTACCCATTACTG		58	11207921	11207939	CAGATAGGAAGGACTGGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34216	FBgn0085245	FBtr0112409	2	1	1	180	2R	3591905	3591924	GGACTTTGGAGATGTATTGC		58	3591416	3591763	GCTTTGCATAAAGGGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13990	FBgn0040950	FBtr0079203	2	1	1	135	2L	6152059	6152141	CATAGTAATTGCATGTGCCG		59	6152239	6152257	TCCATCGGGCTTATAAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR31494	FBgn0051494	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi28S-1192d	FBgn0082998	FBtr0113563	2	1	1	62	X	17038076	17038094	ATCTAATTCTGCATGGTGG		57	17038032	17038052	GGATGGAAATTAATCTGGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13865	FBgn0039965	FBtr0111192	1	1	2	63	X	22415902	22415920	TTCAAAGTCCATGCCTAGG		59	22416291	22416309	TTTGGTCAGAAACTCCAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41479	FBgn0084039	FBtr0111179	3	1	1	81	X	22053041	22053059	TTTGATAATCCGCTCACAG		57	22052978	22052998	CAACAAAGTTACTACCCACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1718	FBgn0031170	FBtr0077233	2	1	1	80	X	21167097	21167115	AAATACGAGGATTTGGCTC		57	21166971	21167054	GATATAGTCCTCAAAGCCCT		58	NA	
Drosophila melanogaster	50	CG14235	FBgn0031066	FBtr0074817,FBtr0074815,FBtr0074816	2	3	3	197	X	19638353	19638371	CATCGCTATAGCTATCGCC		59	19635081	19635099	GAAGTCGATGTACGACTGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Tim9b	FBgn0027358	FBtr0074766,FBtr0074767	2	2	2	60	X	19512144	19512162	AAGTTTACGTGGATGTGCA		59	19512102	19512120	TTCTCCTCCATTTCCTCCA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14207	FBgn0031037	FBtr0074733,FBtr0074734	1	2	2	94	X	19504475	19504493	ATTAGCTCACCCTTGATCC		58	19504616	19504634	TTCACAACAATTTCCTCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32544	FBgn0052544	FBtr0074644	3	1	1	63	X	18754563	18754581	CAACAAGACGAGAGTCTGG		59	18754608	18754626	TGGACAGGATGCTATTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6873	FBgn0030951	FBtr0074607	1	1	1	60	X	18633528	18633546	ATGAGTATCAGCACCAGTG		59	18633486	18633505	AGGATTAGCTTCTCCTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8945	FBgn0030815	FBtr0074411	1	1	1	118	X	16978206	16978224	CAGATTTGGCGTCTAAAGC		59	16978005	16978125	GTAAGACCTCTGAGACTTGG		59	NA	
Drosophila melanogaster	50	CG15865	FBgn0015336	FBtr0074375	1	1	1	60	X	16556643	16556662	GGTGTTCCAACTAATGAAGC		59	16556602	16556620	ACAGGATGTGGTTGATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	3	7	7	83	X	15717700	15717788	GATCCATTGCTTGAGACTG		58	15717832	15717853	TTCGTAGAGATCTTTAAGTCCC		59	NA	
Drosophila melanogaster	50	CG5548	FBgn0030605	FBtr0073960	1	1	1	107	X	14958436	14958455	GACTTAGGCTAGATAACCCT		57	14958525	14958543	AAACTAGCTTGCAACATGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG33248	FBgn0053248	FBtr0073924	2	1	1	127	X	14127551	14127569	CTTTAACAAGCCGGAACTG		59	14127285	14127460	GTTCAACTCTGACTTCGCT		59	NA	
Drosophila melanogaster	50	g	FBgn0001087	FBtr0073842	3	1	1	89	X	13624457	13624536	CCAGAACTTGAAATATCTGGG		58	13624388	13624406	AGTATGAGATCCTTGTGCG		59	NA	
Drosophila melanogaster	50	Lig4	FBgn0030506	FBtr0073847	2	1	1	80	X	13561162	13561240	AGGACACAGAAGTTAAGCAG		59	13561101	13561119	ACCGAATTAGCCACTTCTG		59	NA	
Drosophila melanogaster	50	up	FBgn0004169	FBtr0073851,FBtr0100561,FBtr0073853,FBtr0100563,FBtr0073852,FBtr0100562	1	6	6	80	X	13489402	13489421	GAGCTCATTGTCAAATTGGA		58	13489264	13489362	CAACTCTTTCAAATCGTAGTCC		59	NA	
Drosophila melanogaster	50	CG33651	FBgn0053651	FBtr0091628	1	1	1	63	X	12785773	12785791	TACAGACGACCTTAAGGAG		57	12785728	12785746	GAAATGTGGTTTGCTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LIMK1	FBgn0041203	FBtr0073661,FBtr0073659,FBtr0073660	3	3	3	130	X	12482056	12482074	CCCGAGATGATGAAAGGTC		59	12481875	12481893	AGACTGAAGTCCGAATTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15926	FBgn0062447	FBtr0073649	3	1	1	150	X	12370017	12370191	CAATATGATCAGAGGTGGCA		59	12370372	12370390	TGTTGCTAGATTCTGCGAG		59	NA	
Drosophila melanogaster	50	CG33235	FBgn0030307	FBtr0073545	3	1	1	61	X	11381541	11381562	TAATAATTCTAGGCTCGGACAG		59	11381501	11381520	CTCATCTTTGCAGAGATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kap3	FBgn0028421	FBtr0112931,FBtr0112934,FBtr0112933,FBtr0112932,FBtr0073459	2	5	5	163	X	11231866	11231884	AATCATACGACTCCGTTCG		59	11231668	11231739	CCGGTATATCATTGCTTGC		58	NA	
Drosophila melanogaster	50	CG15309	FBgn0030183	FBtr0112974,FBtr0071487	1	2	2	60	X	10101547	10101566	ACATACTCATGTGTTCACTG		57	10101506	10101524	ACTTCGATATGAGCTCGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Idgf4	FBgn0026415	FBtr0071394,FBtr0071393	2	2	2	161	X	9823337	9823355	AAGAAGATCTTCAGCGGTG		59	9823080	9823212	ATCGAAGAACAGCGAAGAG		59	NA	Nonspecific
Drosophila melanogaster	50	Hex-A	FBgn0001186	FBtr0071361,FBtr0071362	1	2	2	60	X	9481076	9481094	TGCCATACTCAATGACACC		59	9481118	9481136	GCAGTTGTGATTCTTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10970	FBgn0030078	FBtr0071356	1	1	1	60	X	8963895	8963914	CCTTTAAGAAGCTCATCCTG		57	8963854	8963873	ATAATGAACTCCTTGATGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Caf1-180	FBgn0030054	FBtr0071228	3	1	1	183	X	8497904	8497986	ATAGATTACCTTTCACCGGC		59	8497678	8497758	CGAAGAGCACCTTATCCTG		59	NA	
Drosophila melanogaster	50	Sxl	FBgn0003659	FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211	1	12	15	238	X	6978842	6979198	TTTGTTCGGTACAACAAGC		58	6978622	6978640	ATTGATCTACCTCTGTGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	mab-2	FBgn0029003	FBtr0070890	2	1	1	137	X	5906502	5906520	GAAGAGATCCATGTCCCTG		59	5906383	5906401	ATCATCTTGACAATGTCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32755	FBgn0052755	FBtr0070862	1	1	1	114	X	5844917	5844935	ATTCATACCGTGGGAATCG		59	5845013	5845086	TTTCTCCTTCATGGTGACC		59	NA	
Drosophila melanogaster	50	CG3097	FBgn0029804	FBtr0070836	2	1	1	109	X	5660892	5661115	AGTGCTTAGAATCTCGGAG		58	5660801	5660819	GGTACAGGATGAAGGTCAC		59	NA	
Drosophila melanogaster	50	Rnp4F	FBgn0014024	FBtr0070752,FBtr0112876,FBtr0112875,FBtr0070753	2	4	4	80	X	5214528	5214600	AAATAATGGGCTATCCGGG		59	5214466	5214485	CACCATTGTATTCGCTTTCC		59	NA	
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070738,FBtr0070739,FBtr0070740,FBtr0100408	3	4	4	239	X	4962659	4962677	GATTCAACGACACCTTCGA		59	4962976	4962994	TCTTCAGGTGCAGATAGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3081	FBgn0025613	FBtr0070693	2	1	1	60	X	4533911	4533929	AGCAGTATCAATCGTCACC		59	4533869	4533888	TATTTCTCCCTCAAAGCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3626	FBgn0029706	FBtr0070652	3	1	1	84	X	4263412	4263498	ACCTATAAGGAATTGGATGTGG		59	4263541	4263561	ATAGGACATAGCCCAATTCAC		59	NA	
Drosophila melanogaster	50	CG32776	FBgn0052776	FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630	2	4	4	88	X	3791673	3795151	CCTGAGTCTCGATGATGAC		59	3791603	3791623	CGGGATGATCAATAATCTCCA		59	NA	
Drosophila melanogaster	50	CG32776	FBgn0052776	FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630	3	4	4	89	X	3791673	3795151	CCTGAGTCTCGATGATGAC		59	3791602	3791621	GCGGGATGATCAATAATCTC		58	NA	
Drosophila melanogaster	50	CG12535	FBgn0029657	FBtr0070534,FBtr0070535	1	2	2	61	X	3287188	3287206	AAGTTTGGTCATGTCCCTG		59	3287145	3287163	TAGGACATAGAAGTGCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8310	FBgn0040377	FBtr0070450	1	1	1	219	X	2473970	2474043	GGCAAGATCATTGAGACCA		59	2473769	2473787	CCAACTCATAGGTGTCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	phl	FBgn0003079	FBtr0112818,FBtr0111025,FBtr0070401	3	3	3	147	X	2236245	2236263	CACAGATCACTCCAACTCC		59	2236374	2236460	CTCCGCCAGAATATTCCAG		59	NA	
Drosophila melanogaster	50	CG2854	FBgn0040391	FBtr0070399	3	1	1	60	X	2221476	2221494	GTTCTATATTCCATCGGGC		57	2221518	2221536	CCTAACCAGTCGACTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	arm	FBgn0000117	FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988	3	4	5	93	X	1787500	1787518	AGAAGAAGCATATGAGGGC		59	1786142	1787446	AGTATCATATCCTTGCTGATGG		59	NA	
Drosophila melanogaster	50	hfw	FBgn0001189	FBtr0070270	1	1	1	83	X	1566259	1566277	TATGAGTTCGAGGGTACCA		59	1566324	1566408	GTACTCCGGAATCTTGCTC		59	NA	
Drosophila melanogaster	50	futsch	FBgn0085416	FBtr0112628	1	1	1	132	X	1342696	1342714	CACGTGGACTTCTTTAAGC		58	1342810	1342891	TAATGGTGACCTCCAACTC		58	NA	
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	2	8	8	61	X	551358	551376	GGATGATGAGAGCAAGGAG		59	551401	551419	TTAGGAAATCTGCATCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17829	FBgn0025635	FBtr0070118,FBtr0070117,FBtr0070116	1	3	3	69	X	520822	520840	ATTCTGTACGCACCTACAC		59	520951	520969	TACAGAATGGGATTGTTGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13365	FBgn0029529	FBtr0070160	3	1	1	113	X	514982	515001	AAGTACTACGGCTACAAGAC		58	514888	514906	GTGGAATCCAGAGAACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ewg	FBgn0005427	FBtr0100581,FBtr0100580	1	2	8	82	X	165638	167225	CAACAGCAATTACACCACG		59	165574	165594	GATTATTTGGGTCTACCTGGA		58	NA	
Drosophila melanogaster	50	SP71	FBgn0029128	FBtr0100136,FBtr0100135	3	2	2	81	X	94412	94494	CTATGATGTTTCTGTTCACTGC		59	94535	94554	ATAAATGCGTCCATTGAACG		59	NA	
Drosophila melanogaster	50	CR40659	FBgn0085763	FBtr0114213	1	1	1	60	U	9684736	9684755	TACTCATCCACATACTCACC		58	9684695	9684713	ATCAAACACGGTCAAATGG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR41620	FBgn0085826	FBtr0114284	1	1	1	90	U	9844416	9844434	AGGACACATGAACATCGAC		59	9844344	9844362	TATGTAGTCCAAGCAGCAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40779	FBgn0085774	FBtr0114224	1	1	1	60	U	9064031	9064051	TTTCTCGAAATCTATGGGTGG		59	9063991	9064009	CAGACAAATCACTCCACGA		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41562	FBgn0085693	FBtr0114142	1	1	1	60	U	5467698	5467716	AGAACCATCTCGAGTTCCT		59	5467740	5467758	ATGGCTTTCTTGACTTCCT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40275	FBgn0058275	FBtr0113857	2	1	2	76	U	1839126	1839144	GGAATATAGCTGGTGTTGC		58	1845814	1845832	ATTAGGAGCTTTAACGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	bt	FBgn0005666	FBtr0089792,FBtr0089791,FBtr0089794	3	3	4	99	4	750190	751409	TTAACTTTCAAGGTGCGAG		57	751472	751490	TTCATGGTGATCAATGTGC		58	NA	
Drosophila melanogaster	50	ey	FBgn0005558	FBtr0100396,FBtr0089236,FBtr0100395,FBtr0089235	1	4	4	80	4	731644	731662	CGGCCATGTGATATTTCTC		58	731704	733134	TCCTGTTTCATAATACCTCCC		58	NA	
Drosophila melanogaster	50	NfI	FBgn0042696	FBtr0089141	2	1	1	80	4	296250	296269	TTTAAGAGGCTGTATGATCG		57	294526	296208	AAAGGGTGAAATTCATCCTG		58	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156	1	8	10	80	4	115558	115579	ACGAGATAACTATGGTTACGTG		59	115618	120041	ATATTATTGCCTCCCGAATCC		59	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	2	14	14	109	3R	27690344	27690863	AAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864	1	1	14	107	3R	27707590	27747369	AAACTGAACTATTTGCGCG		59	27707501	27707519	CAGTTTGGCCTTCTTTGTG		59	NA	
Drosophila melanogaster	50	CG15544	FBgn0039804	FBtr0085708	3	1	1	146	3R	26665742	26666179	CCCAATAGAGATCTAGTCAAGTG		59	26666285	26666303	TGAGGAGGAAGAGGATGAC		59	NA	
Drosophila melanogaster	50	tmod	FBgn0082582	FBtr0085659,FBtr0085661,FBtr0085663,FBtr0085658,FBtr0085662,FBtr0085660	2	6	7	189	3R	26398542	26398560	CACCATCGAGGAGTTTAGG		59	26398786	26402911	TTTCACACGTATTCTGTCGA		59	NA	
Drosophila melanogaster	50	Sry-beta	FBgn0003511	FBtr0085556	3	1	1	76	3R	25865715	25865733	AGAAGATCATAAACCAGCG		57	25865773	25865791	GTTGAAGAGGTACTCCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15515	FBgn0039719	FBtr0085500	1	1	1	60	3R	25731958	25731976	GTCATGGGTATGTACTCCT		57	25732000	25732018	TGTACATCGTCACAGTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7601	FBgn0027583	FBtr0085544	1	1	1	80	3R	25561672	25561746	TGACCAAAGCTCTACTTCC		58	25561610	25561629	CAAACTTTCCCTGAACAGAG		58	NA	
Drosophila melanogaster	50	Cnx99A	FBgn0015622	FBtr0110909,FBtr0085438,FBtr0085437	3	3	4	116	3R	25142527	25142547	CGATATTCTCTTCGACAACCT		59	25142077	25142449	ACGAATGAGTCCGATTCAC		59	NA	
Drosophila melanogaster	50	CG31050	FBgn0051050	FBtr0085317	1	1	1	60	3R	24475943	24475961	CTTCCTCCACCAGAATACC		59	24475901	24475920	ACTTCCACTAATACGAGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9986	FBgn0039589	FBtr0085304	1	1	1	80	3R	24433363	24433381	CAGAGCTGGTGTTTAAGTG		58	24433425	24433502	GTTGCAAGGTGCTTAACTC		59	NA	
Drosophila melanogaster	50	Hrb98DE	FBgn0001215	FBtr0085302,FBtr0085298,FBtr0085303,FBtr0085299,FBtr0085301,FBtr0085300	3	6	6	203	3R	24428910	24428928	CAATTGGAACAATGGTGGC		59	24429384	24429402	CAATATCTGCGGTTGTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	wdb	FBgn0027492	FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206	1	7	7	125	3R	23392424	23392442	AAATTCTTAGGACTGCGGG		59	23392253	23392336	GTTGATGATACTGCCAAGGA		59	NA	
Drosophila melanogaster	50	CG6051	FBgn0039492	FBtr0113297	3	1	1	179	3R	22954289	22954368	AGAATCAGGACAAAGTGCT		58	22954128	22954146	CTCGGTTCATAATCGAGGA		58	NA	
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100335,FBtr0100339,FBtr0085093,FBtr0085092	2	4	9	102	3R	22699389	22699589	TAGATTGGATGCTCTTTGGG		59	22699306	22699326	TCCTGCTTAGTAACTCTAAGC		58	NA	InUTR
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100335,FBtr0100336	2	2	9	68	3R	22699829	22699848	CAATATGAATGCAAACCGCA		59	22699712	22699798	CCGTATATGCTACGGTAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6154	FBgn0039420	FBtr0084992,FBtr0084991	2	2	2	81	3R	22095467	22095485	ATCAACCACATAAGGGAGG		58	22095530	22095682	CTTTGGGCACTAAGTTGAC		58	NA	
Drosophila melanogaster	50	RpL34a	FBgn0039406	FBtr0084973,FBtr0084972	1	2	2	78	3R	21884404	21884422	ATCGAAGAGCAGAAGATCG		59	21884344	21884362	TCTCCACAACCTTCTTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31111	FBgn0051111	FBtr0084790	2	1	1	60	3R	20881129	20881148	AATACCCGACAATGATCTGG		59	20881088	20881106	CATGTGACACATATTGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ssh	FBgn0029157	FBtr0084800,FBtr0084799	2	2	2	163	3R	20769134	20769152	CTCTTAAGGATATCCCGCC		58	20768924	20769007	CTTGACAGCCATCTTTAGC		58	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100638,FBtr0084685,FBtr0100627,FBtr0100636,FBtr0100637	1	5	17	94	3R	20517641	20519497	AGATCGTTCAAGACGTCAC		59	20519555	20519573	GAAGGTGATAGGGTTTCGG		59	NA	
Drosophila melanogaster	50	CG13624	FBgn0039209	FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795	1	6	6	107	3R	20386540	20386627	CATTAAGGTGTACAAGCACAG		59	20386453	20386471	CTTAGCTTGTCCAGTTCCT		58	NA	
Drosophila melanogaster	50	CG13618	FBgn0039203	FBtr0084643	1	1	1	77	3R	20352352	20352370	GAACTTCGACAAATGCCTG		59	20352473	20352491	ATGCCAAATTCCCTATTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	1	5	6	80	3R	20045369	20045388	ATGAACATCTACAACGAACC		57	20025660	20045326	TGGATTCACGGTAAATGAC		57	NA	
Drosophila melanogaster	50	Syx1A	FBgn0013343	FBtr0084588	2	1	1	60	3R	19929419	19929437	TATGGACTATGTGCAGACG		58	19929377	19929396	TTTACTCTGGTACTTGAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab7	FBgn0015795	FBtr0084503	3	1	1	107	3R	19820232	19820251	ATACCCTACTACGAAACGTC		58	19820321	19820400	GTTGATAACTTCAGCCTCC		57	NA	
Drosophila melanogaster	50	CG31140	FBgn0051140	FBtr0084497,FBtr0113392,FBtr0084498	2	3	5	81	3R	19802102	19802121	TCACAAATCGGATAAATCGG		58	19802162	19802239	CACCTTGATCATCTCTATATCC		57	NA	
Drosophila melanogaster	50	btn	FBgn0014949	FBtr0084278	3	1	1	65	3R	18412175	18412193	CTAATTGGTGCAACGAAGC		59	18412128	18412147	GAAGTTCTTGACCAGTAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6921	FBgn0038985	FBtr0084262,FBtr0084261,FBtr0084263	3	3	3	94	3R	18380687	18380708	GTTCTATAATGCCTTTCAGGTC		58	18381152	18381171	ACTTCTTCGAGAAGATCGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31169	FBgn0051169	FBtr0084217,FBtr0084218	1	2	2	80	3R	18209069	18209140	TATGCAACACGAATTTCCG		58	18209184	18209202	GCCTCTATCATCAGTTCCG		59	NA	
Drosophila melanogaster	50	CG5740	FBgn0038932	FBtr0084195,FBtr0084196	1	2	2	82	3R	17957955	17958385	CCTGACCAATCTATTTGAGGA		59	17958429	17958447	ATTCGGTTATCTCACGCAG		59	NA	
Drosophila melanogaster	50	BG4	FBgn0038928	FBtr0084176	1	1	1	61	3R	17860377	17860395	TGTCGAAGAGATTGGTTCG		59	17860417	17860438	CAATTAAATCCTCGATGGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13409	FBgn0038926	FBtr0113264,FBtr0084184	3	2	2	104	3R	17855942	17855961	ATGTTCTTCTACATCGCCTG		59	17855791	17855876	CAAGCGCATATCAAAGTACG		59	NA	
Drosophila melanogaster	50	CG6353	FBgn0038893	FBtr0084116	2	1	1	159	3R	17487932	17488449	GGATGTTCAAATCCACGGA		59	17487791	17487810	GTGAAAGAGTAAGCTCTCCA		59	NA	
Drosophila melanogaster	50	ETHR	FBgn0038874	FBtr0084053	3	1	2	117	3R	17085602	17089752	TTTACGAGTCCCATCATCG		59	17089832	17089851	CCACGAAGTAGAAGATCGAC		59	NA	
Drosophila melanogaster	50	CG10825	FBgn0038860	FBtr0113258	2	1	3	121	3R	16956617	16956637	GTGTGCAGAAATACATACACG		59	16956796	16956814	TCTGAGCATTGAGACTCCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15695	FBgn0038832	FBtr0083967	2	1	1	61	3R	16669091	16669177	GATACAACAAGATGGGCGA		59	16669202	16669220	GTTAAATCCCGTGAGAACC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG17186	FBgn0038741	FBtr0083858	3	1	1	60	3R	15702125	15702144	GTTGTGGAGGATATACAGGA		58	15702084	15702104	CCACTAGATTGATCTCTTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6300	FBgn0038730	FBtr0083798	3	1	1	80	3R	15598111	15598191	GGCAACTATCATCTGACCA		59	15598049	15598067	AATGGTGGTAAGCAAACCA		59	NA	Nonspecific
Drosophila melanogaster	50	CG5316	FBgn0038704	FBtr0083760,FBtr0083758	3	2	3	81	3R	15230456	15230569	CAGGGATATAACTCAGCTAACC		59	15230609	15230629	CTTCTCGATGATTTGATTCGC		59	NA	
Drosophila melanogaster	50	CG3734	FBgn0038700	FBtr0083755	2	1	1	80	3R	15215343	15215424	ACTATTATTCCAGAGCATGC		57	15215466	15215485	TTTGGAAGCTCTCATTTCAG		58	NA	
Drosophila melanogaster	50	CG14292	FBgn0038658	FBtr0083725	1	1	1	77	3R	14731173	14731191	AGCTACTGTTGGAAATCCC		59	14731114	14731132	AGGAAGGGATTAAAGGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14303	FBgn0038633	FBtr0083659	3	1	1	144	3R	14474625	14474717	GTCAACAGGAAATAAAGGACAG		59	14474822	14474840	AGTACATTGTCCACTGTGC		59	NA	
Drosophila melanogaster	50	CG7156	FBgn0038588	FBtr0083607	1	1	2	134	3R	14067506	14067524	CAAGAGTCTCCAACTACCC		58	14067313	14067331	ATAGCTTCTTAAGTGGCGA		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG14888	FBgn0038442	FBtr0083298	2	1	1	85	3R	12378114	12378132	TAACCACAACCATCAAGGG		59	12378180	12378277	AATCTGTGTATCAGGTGGTC		59	NA	
Drosophila melanogaster	50	Gyc-89Da	FBgn0038435	FBtr0110963,FBtr0110962	2	2	2	60	3R	12299798	12299816	ACCACGACATGAAGATCAC		59	12299839	12299858	TTGTGCATAATCCAGGTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sb	FBgn0003319	FBtr0083250	2	1	1	171	3R	11965602	11966315	AGACACAGAAGAAGCACAC		59	11966448	11966468	GGCAATTGACTACGATTAAGG		59	NA	
Drosophila melanogaster	50	CG6125	FBgn0038337	FBtr0083105,FBtr0083106	2	2	2	87	3R	11229094	11229170	CCTTAAACAGCATGAATCCAC		59	11229027	11229045	CTCAGATCGTAGTGCATCG		59	NA	
Drosophila melanogaster	50	mRpS10	FBgn0038307	FBtr0083053,FBtr0113237	1	2	3	108	3R	11055700	11055718	TGGTTTGCTACTACTGCTG		59	11055859	11055877	AGATATGCACCGACTTCAG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Spn5	FBgn0028984	FBtr0083142,FBtr0083141	1	2	2	80	3R	11029204	11029285	TGGAACTTAATCCTATCCTTGC		59	11029145	11029163	AGGTCAGATCATCGAAGGT		59	NA	
Drosophila melanogaster	50	Zeelin1	FBgn0038294	FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034	3	4	5	122	3R	11002152	11004016	ACTACAGCCGAACAATTCC		59	11001978	11001996	GCTTGTCCCTCAAGTAGAG		59	NA	
Drosophila melanogaster	50	CG7262	FBgn0038274	FBtr0083008	2	1	1	213	3R	10722102	10722183	TGTTAACAGTGGACTCTTCC		59	10721908	10721926	CCTTAACGATCCACCTAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	btsz	FBgn0053555	FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530	2	5	5	100	3R	10634158	10634176	ATAAGCTGAGTGCTTTGGA		58	10634011	10634096	TAGATACACCTTAACGTAGGG		58	NA	
Drosophila melanogaster	50	l(3)L1231	FBgn0086686	FBtr0082975	3	1	1	103	3R	10471316	10471334	GTATTTGCGAGAACAGCTC		58	10471109	10471250	TGCTATATCATCAGCATCGT		58	NA	Nonspecific
Drosophila melanogaster	50	RpII15	FBgn0004855	FBtr0082925	2	1	1	60	3R	10135043	10135061	TTGCGATTACAAACAGGAG		58	10135083	10135103	CTCGTGCATAATCTTGTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp313a4	FBgn0038076	FBtr0082667	3	1	1	98	3R	8506088	8506149	GATACCAATGCATCCTGGA		59	8506008	8506026	AGTAGTGCGATTCCTTTCC		59	NA	
Drosophila melanogaster	50	CG33098	FBgn0053098	FBtr0082580,FBtr0082579	1	2	3	122	3R	8213638	8213708	AGCTGAAGGAAGTCTTCTC		58	8213794	8213812	TCATCTGTTCCAGTAGCTG		58	NA	
Drosophila melanogaster	50	GstD9	FBgn0038020	FBtr0082608	3	1	1	60	3R	8192399	8192419	GGCTATACTGATTTATCTGGC		58	8192359	8192377	ATCCTTGGGATAAAGGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tango9	FBgn0037971	FBtr0082508	2	1	1	80	3R	7799941	7800041	TCGTCGTGGAGTTATATCC		58	7799879	7799897	GGCAATAGCATGCTAACAG		58	NA	
Drosophila melanogaster	50	l(3)neo38	FBgn0086910	FBtr0082533,FBtr0110877,FBtr0110876	3	3	3	126	3R	7596969	7596991	GAATATCTCCATACCGTACTCAC		59	7595815	7596883	CTGGTTGAGGACTTCTTCC		59	NA	
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082457	3	1	6	71	3R	7417225	7417243	CCAAGAAGCTAAAGATCCG		57	7416979	7416997	AATACTCGTTGGCTACGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6782	FBgn0037912	FBtr0100464	2	1	4	192	3R	7386919	7390171	GCTGATCACCCTAATTCCC		59	7386745	7386763	TAGGTGATGCAGATCTCGA		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG31374	FBgn0051374	FBtr0082400,FBtr0082401,FBtr0082399	1	3	3	84	3R	7264081	7264157	GAGTATCCTCAAGGAGGAG		57	7264015	7264033	TTCGTCTAGCTTCATGGAG		58	NA	
Drosophila melanogaster	50	Art1	FBgn0037834	FBtr0082304	2	1	1	84	3R	6613245	6613265	CAAGATTGAGGAGATTGAGCT		59	6613094	6613199	GTAGAACAGGCAGTAACCC		59	NA	
Drosophila melanogaster	50	CG31391	FBgn0051391	FBtr0082321	3	1	1	60	3R	6530108	6530129	ACTATCCACGATAAGTACTTCC		58	6530069	6530087	TCCAGACTATTTGGATGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6254	FBgn0037794	FBtr0082184	1	1	1	92	3R	5985595	5985613	ATCACAAACTTGTGCACAC		59	5985458	5985542	CTAAATGGATCTTTAACCTCGC		59	NA	
Drosophila melanogaster	50	CG9793	FBgn0037620	FBtr0081948	3	1	1	188	3R	4554800	4554820	CAAAGCAGGAACTCAAATCAG		59	4554580	4554650	GATCCTCACAGAATTCGCA		59	NA	
Drosophila melanogaster	50	Dhod	FBgn0000447	FBtr0081890,FBtr0081891,FBtr0081889	1	3	3	60	3R	4477366	4477384	TACGTCCAAATCTACACGG		59	4477324	4477344	CCTTAATGTCTTCCACAAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or85d	FBgn0037594	FBtr0081872	1	1	1	94	3R	4379497	4379515	TATTAAGAGGGCCCAACAG		58	4379634	4379652	TGTACGAGAGTTGCAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18745	FBgn0042102	FBtr0081777	2	1	1	146	3R	3611008	3611028	AATATAACCGGATACGCAGAG		59	3610825	3610900	AATGGATACTTGGCTGCTC		59	NA	
Drosophila melanogaster	50	Antp	FBgn0000095	FBtr0081648,FBtr0081652,FBtr0081646,FBtr0081651,FBtr0081649,FBtr0081650,FBtr0081647,FBtr0081656,FBtr0081654,FBtr0081653,FBtr0081655	2	11	11	230	3R	2735975	2735993	AGATTAGGCTACGCAACTG		59	2735610	2735629	CAGTTGTTTGTACTCATCGT		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	zen2	FBgn0004054	FBtr0081671	1	1	1	60	3R	2569076	2569096	GAACACAATACACAGGATCAG		58	2569036	2569054	AAGAGCTATTCGAGTCCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1024	FBgn0027514	FBtr0081733	3	1	1	60	3R	2205190	2205208	CCTGTAAACGAACCTAAGC		58	2205148	2205169	TCAAACACCGATCTAGATTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31554	FBgn0051554	FBtr0078637	2	1	1	151	3R	1642560	1642578	AGGATAGGGTTTCTTTCGC		59	1642693	1642711	GTTTGCTCGTCTATTGTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1109	FBgn0046222	FBtr0078713,FBtr0078714	3	2	2	85	3R	1487665	1487683	TGTTAAGTACTGGCAGTCC		58	1487731	1488795	TGGGACTGAAACTTATTCCC		59	NA	
Drosophila melanogaster	50	MTA1-like	FBgn0027951	FBtr0078734,FBtr0078733	1	2	2	90	3R	1466844	1466862	CTCACAATAATTCCCACGC		58	1466659	1466793	GAACTATAGTAACTTCAGTGCC		58	NA	
Drosophila melanogaster	50	CG14673	FBgn0037352	FBtr0078738	1	1	1	60	3R	1452500	1452518	GATGAGTCCGTAGAGACCT		59	1452458	1452476	TGGTCGTTATCCAATACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31550	FBgn0051550	FBtr0113409	1	1	3	206	3R	1312410	1312428	AAATCTGGAGGCTATCCAG		58	1312598	1313566	ATAAAGAAACCTTGTGGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	tacc	FBgn0026620	FBtr0089955,FBtr0089951,FBtr0089953,FBtr0089949,FBtr0089952,FBtr0089954,FBtr0089950	2	7	7	135	3R	561270	561373	ATCTGCATGTGAAATACGAG		58	561154	561172	TTCTTCATCTTGTCGTAGC		57	NA	
Drosophila melanogaster	50	CG41456	FBgn0084018	FBtr0111155	3	1	1	80	3L	24282386	24282405	GAAGAAGGAGATCATGAGTG		57	24282325	24282343	CTTAGGATGTTACGAGGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycH	FBgn0022936	FBtr0078439	2	1	1	107	3L	21816054	21816072	GGTGAAGCAATATCAGCAG		58	21816140	21816219	TCCTTATAGAGTTCGCTATCAG		58	NA	
Drosophila melanogaster	50	S1P	FBgn0037105	FBtr0078466	3	1	1	134	3L	21609632	21609650	CTTGACGACAGAGTCAGTC		59	21609458	21609536	GGAAGTGTAAGAAACTTGGGA		59	NA	
Drosophila melanogaster	50	CG7173	FBgn0037099	FBtr0078380	1	1	1	84	3L	21548909	21548927	ATAATCTGTGGATCCGACG		58	21548777	21548863	TCGTCACACTTATATTGAGGC		59	NA	
Drosophila melanogaster	50	Mkrn1	FBgn0029152	FBtr0078383,FBtr0078384	1	2	2	68	3L	21524869	21524890	CAGAGCCAGAATGAAATAATCG		59	21524638	21524656	ATAATCTCGCCGATCTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7519	FBgn0037087	FBtr0078353	2	1	1	125	3L	21486447	21486531	CACTTTAATCTCATCACCAGC		59	21486618	21486636	AATATCATCGGTAAGCCGG		59	NA	
Drosophila melanogaster	50	CG7338	FBgn0037073	FBtr0078342	1	1	1	91	3L	21330395	21330414	CAATTGATAATCCAGTGCGG		59	21330468	21330542	TAGCGTTCGAACTTATGCT		59	NA	
Drosophila melanogaster	50	ko	FBgn0020294	FBtr0078324	3	1	1	260	3L	21092786	21092805	CTTAAGTCTGAACTCTTGGC		58	21082319	21092563	TGGCAGCTAGAAAGTTCTG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG5104	FBgn0037009	FBtr0078209	2	1	1	180	3L	20514519	20514537	ACGACATGTCCACTTTGAG		59	20514681	20514774	ATGAGAAAGCAGGTACTGG		58	NA	
Drosophila melanogaster	50	CG6996	FBgn0036950	FBtr0074822	3	1	1	60	3L	20201024	20201042	CTGACCTTCAATGCAACTC		58	20201066	20201084	GATCGTTCATCTTGGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7646	FBgn0036926	FBtr0074901,FBtr0074900	1	2	2	81	3L	19988537	19988555	TTTCGAATGTACGATGTCG		57	19988600	19988744	GCATGTCATAAATTGCCTG		57	NA	Nonspecific
Drosophila melanogaster	50	Csas	FBgn0052220	FBtr0074911	2	1	1	81	3L	19981544	19981564	CCAAGTATATTCAAGAGGCTG		58	19981428	19981503	CATCGCAGATAATGTGATCTC		58	NA	
Drosophila melanogaster	50	CG15881	FBgn0036909	FBtr0074879,FBtr0074880	2	2	2	73	3L	19799699	19799718	TACGGATAACCAGTTTAGGG		58	19799807	19799825	TGATGTCCTCGACATTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	asf1	FBgn0029094	FBtr0074947	3	1	1	61	3L	19612559	19612577	TTGTTCTGCTTACCTGCTC		59	19612602	19612620	ATTCACATAGTAGCCCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18135	FBgn0036837	FBtr0075044,FBtr0075043,FBtr0075042,FBtr0075045	2	4	4	60	3L	18984754	18984772	ATGATCGAGTTGGATGTCC		59	18984712	18984733	CGAAATCGTGATAAATCACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32196	FBgn0052196	FBtr0075118	2	1	1	80	3L	18452970	18453047	GGATTTGGATGATCAGGAG		57	18452908	18452926	GAATCAGTGTTCAACAGGT		57	NA	
Drosophila melanogaster	50	CG6052	FBgn0036747	FBtr0075195	1	1	1	60	3L	17722178	17722196	CCATATCGGACCTAAACCT		58	17722136	17722155	TCGTGCAATATCCTATTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13728	FBgn0036716	FBtr0075238	3	1	1	60	3L	17373722	17373740	ATCAACTCGAATGACTTGC		58	17373680	17373700	CTTCTTGTCTTGGTTCAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cad74A	FBgn0036715	FBtr0075240,FBtr0075239	2	2	2	95	3L	17363253	17363333	CGAATGTCACAGAGAATGC		58	17363176	17363194	AAGTAATGGTTCCGGATGG		59	NA	
Drosophila melanogaster	50	CG6664	FBgn0036685	FBtr0100439,FBtr0075294,FBtr0075295,FBtr0075293	1	4	4	80	3L	17008139	17008158	GATACCTTCAAGACCAAGTG		57	17007996	17008097	TTTGGCTTGAATGATGACTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG11905	FBgn0036678	FBtr0075305,FBtr0113174,FBtr0075300	2	3	10	196	3L	16922148	16922167	ATGGCTCCTAAGAAAGATGC		59	16921906	16921924	AATGAAATGCTGAAGGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18814	FBgn0042137	FBtr0075385	1	1	1	113	3L	16363480	16363498	AGTGAACATTTCCTCGGTG		59	16363575	16363648	TAATGGATGGGACTAGCCA		59	NA	
Drosophila melanogaster	50	Pdh	FBgn0011693	FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536	2	4	4	131	3L	16346822	16346840	CATCATTCCCGTTTACGGA		59	16346645	16346663	ATGTCCGTCATTGTAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5222	FBgn0036570	FBtr0075495	1	1	1	102	3L	16097460	16097478	TAACCATGTGTTCTCCGAG		58	16097319	16097337	GATAAAGTGAACAGCGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	brm	FBgn0000212	FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523	2	4	4	160	3L	15964327	15964406	GATACCATTCTAGGTCGAGG		58	15964186	15964204	CGATTCTTACGCTTTCGTC		58	NA	
Drosophila melanogaster	50	CG17839	FBgn0036454	FBtr0075695	2	1	2	144	3L	14872647	14873311	CGAAGTTAATGTCAGATGGGA		59	14873417	14873435	CATCGAGGAACCTGAATCC		59	NA	
Drosophila melanogaster	50	HGTX	FBgn0040318	FBtr0114619,FBtr0075720	1	2	2	93	3L	14577188	14583109	CAGGTTAAGGTCTGGTTCC		59	14577113	14577131	CCATATCGTCCTGTTTCCT		58	NA	
Drosophila melanogaster	50	Sox21a	FBgn0036411	FBtr0075748	3	1	1	63	3L	14099834	14099852	ATTCGAATACTGGAAGCCA		58	14099789	14099807	ATGAAAGCGTTCATTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32138	FBgn0052138	FBtr0075776,FBtr0075775,FBtr0114573	3	3	3	84	3L	14060635	14060721	GAAACATTGCAATCTCCCG		59	14060769	14060787	AGTTTCTTCAGGTCCAGAC		58	NA	
Drosophila melanogaster	50	CG8757	FBgn0036380	FBtr0075803	1	1	1	89	3L	13834551	13834569	AACAACATATGCCCATGCT		59	13834406	13834501	TATTATGGACCTGAACATTGGG		59	NA	
Drosophila melanogaster	50	stv	FBgn0086708	FBtr0075806,FBtr0075809,FBtr0075807	1	3	5	83	3L	13474163	13474181	GACATGGACAACATGTTCC		58	13474228	13474324	GAAACCAAAGTGTGAGTCG		58	NA	
Drosophila melanogaster	50	CG14110	FBgn0036352	FBtr0075844	3	1	1	60	3L	13378113	13378131	TCCCGTAAAGATGAAGAGC		59	13378154	13378173	TGATATAGGCATTACGTCCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34242	FBgn0085271	FBtr0112436	3	1	1	116	3L	12527159	12527177	TTAGCTAAATGGCAGTCCT		58	12527257	12527275	TCTCAGTGTTAACCATGGG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG9760	FBgn0036259	FBtr0076021	3	1	1	137	3L	12151110	12151128	ACTCCATCGGGATATTGTG		58	12150941	12150960	AATTGTGCACATTTCCACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18490	FBgn0036149	FBtr0076167,FBtr0076166	3	2	2	171	3L	11219659	11219744	GATGCGTCAGTAAACAAGC		59	11219876	11219897	CGAAAGGTATTTCATCAACGTC		59	NA	
Drosophila melanogaster	50	Mnf	FBgn0036134	FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228	1	5	5	98	3L	11109449	11109535	ACAATACACAGGATCTGTTCC		59	11109371	11109389	ATATGGCCTGAACGATGAG		59	NA	
Drosophila melanogaster	50	Mnf	FBgn0036134	FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228	3	5	5	145	3L	11108508	11108591	CAGTACAGTAGTGGCAGTC		59	11108381	11108399	ACATGGTTCCTCTTTAGCG		59	NA	
Drosophila melanogaster	50	vsg	FBgn0045823	FBtr0076399	2	1	4	188	3L	9707709	9708850	ATTTGTGCGAAGAAGTGAC		58	9709002	9709020	TGGAAGTTGTGGTCTTCTC		59	NA	
Drosophila melanogaster	50	CG33702	FBgn0053702	FBtr0091690	1	1	1	60	3L	9506001	9506019	AACGATAAGACGCTGAAGG		59	9505959	9505978	CCACAAGTTTGTATTCACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsp67Ba	FBgn0001227	FBtr0076495	2	1	1	86	3L	9371770	9371788	CTTTAAATCCGACTGCACC		58	9371702	9371720	TCTCTGTCTCTTCCTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nwk	FBgn0035966	FBtr0076532	1	1	1	121	3L	9132027	9132046	AGATCTCATCGCAGTATCTC		58	9132220	9132238	TTTCTCATTCTCCTCGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Doc2	FBgn0035956	FBtr0076547,FBtr0100367	3	2	2	65	3L	9007825	9007843	AAGTTGACCAATAACACGC		58	9007700	9007718	CTGATACTTGTGCATGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5741	FBgn0035937	FBtr0076565	3	1	1	87	3L	8927824	8927842	AGGATTCTGATCTTCAGGC		58	8927686	8927773	TCATCTTCAGACTTGACGC		59	NA	
Drosophila melanogaster	50	Tsp66E	FBgn0035936	FBtr0076507,FBtr0076508,FBtr0076506	1	3	3	84	3L	8919887	8921127	GCATTGAGCAATTTACACAG		58	8921174	8921192	CTCATGAAGAACATGACGG		58	NA	
Drosophila melanogaster	50	Idh	FBgn0001248	FBtr0114547,FBtr0076670	1	2	9	114	3L	8351125	8351143	TAATGAAAGGATGTCCGCC		59	8350919	8350937	TTGGCTCTTAATGGAGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7182	FBgn0035878	FBtr0076677	3	1	1	61	3L	8338727	8338745	CCCATCAATATCACACGGA		59	8338684	8338702	GTAGCTGGGTATGGATAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8005	FBgn0035854	FBtr0076695	2	1	1	61	3L	8192043	8192062	GTCGAAGATTATTCATCGGT		57	8192083	8192104	CCCAATAGTAAATGGAACTAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7979	FBgn0035848	FBtr0076690	1	1	1	90	3L	8175014	8175032	CTATGCGTATGCCAAACAG		58	8175373	8175391	TCGTCCATCGTTCATATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	nmo	FBgn0011817	FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758	2	6	6	142	3L	8040250	8040352	GTCTTCGATCCGGATAAGC		59	8040457	8040476	AAATCAGCCGTATACTGACG		59	NA	
Drosophila melanogaster	50	Clk	FBgn0023076	FBtr0100132,FBtr0076785	2	2	3	172	3L	7761742	7761819	AATCATAATGAGGCCACCG		59	7761588	7761607	GAGGTAATACTTTCCGAGGC		59	NA	
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112700,FBtr0112693	2	2	10	97	3L	7655623	7655641	AACGACAATTACCACTCAG		57	7654580	7654598	TTGAGTTTGGTAAATCGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mus312	FBgn0002909	FBtr0076839	2	1	3	86	3L	7324322	7324400	AGCGACGAAGTAAAGACTG		59	7324516	7324536	ATCGAACTCTTGTGTTAGGTC		59	NA	
Drosophila melanogaster	50	Cpr65Eb	FBgn0035736	FBtr0076928	1	1	1	72	3L	7081512	7081530	GCTCATCACAGTACTACAC		57	7081458	7081476	TGGAATCCGTTCTCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32388	FBgn0045806	FBtr0076933	1	1	1	156	3L	6976930	6977010	GAAATTCAAATGTCTGCAGC		58	6976793	6976812	GGCTTTATAATGTCTGTGCA		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG10077	FBgn0035720	FBtr0076941,FBtr0076940	2	2	2	66	3L	6947251	6947269	CAGGTACTCATGTGGTCAG		59	6947203	6947222	TATTAAGGAATTCCTCGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mad2	FBgn0035640	FBtr0077113	2	1	1	84	3L	5805866	5805886	GGCTAACCATTCTAATGTCCA		59	5805741	5805820	TTCGAGAGCCATTCTTCAG		59	NA	
Drosophila melanogaster	50	CG4769	FBgn0035600	FBtr0077144	3	1	1	89	3L	5355077	5355209	TTGTACAACGAGGTCATCG		59	5355262	5355280	AGTCCACTTCAGGAAAGTG		59	NA	
Drosophila melanogaster	50	shep	FBgn0052423	FBtr0077172,FBtr0077175,FBtr0077173,FBtr0077174	3	4	4	80	3L	5156244	5156459	CAGGTAGATGATCAGACTTCG		59	5156184	5156204	TTTGTATGAGGTTACTCCCAG		59	NA	
Drosophila melanogaster	50	CG14998	FBgn0035500	FBtr0073267,FBtr0073265,FBtr0073268,FBtr0113135,FBtr0073269,FBtr0073266	3	6	6	112	3L	4127071	4127089	GACAAACATGTCCACATCC		58	4126920	4126997	GTTTGTTAATCTCCTCGAGAG		58	NA	
Drosophila melanogaster	50	Gr64e	FBgn0045476	FBtr0073199,FBtr0073200	1	2	2	94	3L	4034471	4034489	TCTGAAGTTGCCCAAAGAG		59	4034547	4034625	TCATAATGTGCTCCACCAG		59	NA	Nonspecific
Drosophila melanogaster	50	Gr64d	FBgn0035486	FBtr0073198	1	1	2	96	3L	4032380	4032469	ATACCATGGGCTCTTTGAG		59	4032529	4032547	GTTTCCCGGATGATATGGG		59	NA	Nonspecific
Drosophila melanogaster	50	armi	FBgn0041164	FBtr0073126,FBtr0100641	1	2	2	88	3L	3463216	3463234	AAGACAGACTTGCCTACAG		58	3463283	3463370	CTCGTAAATTTGGAATACTGGC		59	NA	
Drosophila melanogaster	50	dro3	FBgn0052283	FBtr0073060	3	1	1	64	3L	3315066	3315084	TGCTGTAATGACCATTGTC		57	3315112	3315130	TTCCAGATAGGCAATCACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12082	FBgn0035402	FBtr0073114	3	1	1	160	3L	3147627	3147646	GATAAGAAGCTGCCCTATCC		59	3147425	3147443	TTATCTGCGTACTTCGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Shab	FBgn0003383	FBtr0072975,FBtr0112829	3	2	4	85	3L	2941551	2941572	CTCCTTCCATCATATCAATCTG		58	2941618	2942577	TTGTTTGCTTTCCTGTGTC		58	NA	
Drosophila melanogaster	50	CG14950	FBgn0035364	FBtr0072947	3	1	1	82	3L	2658368	2658488	GTAGAGGTGGAGCTAATCTG		58	2658305	2658323	ATGTAGCACTTCACGTACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG16985	FBgn0035355	FBtr0072929	1	1	1	140	3L	2599821	2599903	TTATGTCGAAAGGATCCCA		57	2600007	2600025	GAATGCAGTCCAAATAGGC		58	NA	
Drosophila melanogaster	50	CG13924	FBgn0035286	FBtr0072835	1	1	1	60	3L	1870902	1870920	GTGGCCAGCTATATTCCAG		59	1870941	1870962	CCTTCTTGTAGTAAATGCTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi18S-841a	FBgn0086669	FBtr0091766	1	1	1	76	2R	17214615	17214635	GTAAGCTTGCTAGAATAAGGG		58	17214673	17214691	GAATTCAATGCGGCATCTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33409	FBgn0053409	FBtr0086401	1	1	1	62	2R	15633062	15633080	AATACATCGGTTCTCGTCC		59	15633018	15633036	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33421	FBgn0053421	FBtr0086413	1	1	1	62	2R	15628640	15628658	AATACATCGGTTCTCGTCC		59	15628596	15628614	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nplp1	FBgn0035092	FBtr0072443	3	1	2	107	2R	20925012	20925030	TCGACTGGAACGATTATCG		59	20926620	20926639	GAAACACTGCTTACAAACGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG2857	FBgn0035078	FBtr0072419	2	1	1	60	2R	20787170	20787189	GAATGTTGCCTACTCTACTC		57	20787129	20787149	TCATAGATGGAGAAGTACACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Start1	FBgn0035028	FBtr0089867	2	1	2	135	2R	20464508	20464526	CGAAGCGAATAACATGACG		59	20464625	20464688	AAGAGTCAACCGACTTGTG		59	NA	
Drosophila melanogaster	50	itp	FBgn0035023	FBtr0072306	1	1	2	80	2R	20443081	20443813	CACCGATTATGCAAGAAAGAC		59	20443853	20443873	TTCCTCTTCGGGTATTAACAG		59	NA	
Drosophila melanogaster	50	CG3494	FBgn0035008	FBtr0072295,FBtr0072296	1	2	2	60	2R	20362485	20362503	CATCGATGCTAGTGAATCG		58	20362525	20362545	TCCCAAGTTCAATCTCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tamo	FBgn0041582	FBtr0072281,FBtr0072282	3	2	2	152	2R	20017461	20017544	CTCTCAAGACCTATTCGGG		58	20017327	20017346	AAACATTCGTAACCTGATCC		57	NA	
Drosophila melanogaster	50	Tal	FBgn0023477	FBtr0072141	1	1	1	192	2R	19828585	19828603	AACATCTATAAGCCCACGG		59	19828818	19828836	CAACCTTCAGGATTTCCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Or59c	FBgn0034866	FBtr0072020	2	1	1	60	2R	19360472	19360492	TAGTGTTCATCTCCTTGTTCC		59	19360432	19360452	AGATTAGCTATGCGATCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k09913	FBgn0021979	FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961	3	4	4	100	2R	18958339	18958357	TGAGATGGGATTCGATGTG		59	18958497	18958515	GGAATCGAATAGTCTCGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	ppa	FBgn0020257	FBtr0071924	1	1	1	60	2R	18575397	18575416	TGTAAACAGATCACGGACAC		59	18575356	18575377	TCTCAAGATTCCTTAGATGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33143	FBgn0053143	FBtr0071858	2	1	2	200	2R	18508621	18508639	GTTTGTGCTCATAGCTGTG		59	18509801	18515319	TGTACAACCCTGTAACTGTC		59	NA	
Drosophila melanogaster	50	Vps20	FBgn0034744	FBtr0071857,FBtr0071856	3	2	2	85	2R	18496532	18496550	CGAAATGCTTGACATCGAC		59	18496599	18496617	GTATGGCGTCTATTTCCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3290	FBgn0034711	FBtr0071782	3	1	1	121	2R	18094151	18094238	TTGTGTTCATAGAGGGTGG		58	18094048	18094067	GATGTTGGTCATTTCACGAG		59	NA	
Drosophila melanogaster	50	Vrp1	FBgn0034695	FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104	1	7	7	86	2R	17998431	17998841	CAACCTAAATATCTCGTTAGGC		58	17998366	17998384	AGACTGCTGTTTAAGGACG		59	NA	
Drosophila melanogaster	50	CG13488	FBgn0034670	FBtr0071723	1	1	1	60	2R	17839435	17839453	CACTCAGCTAGTTTCCCAG		59	17839477	17839495	GACGATCAGATCTTCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10080	FBgn0034641	FBtr0071658	3	1	1	83	2R	17514520	17514540	GTCTGAGCTTCCAATTTAAGG		58	17514582	17514668	GTACGGAAATGACATTGTACAG		59	NA	
Drosophila melanogaster	50	Fkbp13	FBgn0010470	FBtr0071702,FBtr0071703	3	2	2	70	2R	17375559	17375577	AATGTGTTCAAGGAGATCG		57	17375334	17375526	TTTAGATACTCGCTGACCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457	2	11	15	113	2R	15365201	15366256	TTCACTCTGGTCAAACCAG		59	15366332	15366351	AGAGTTTGGAGAAGAAGCTC		59	NA	
Drosophila melanogaster	50	wbl	FBgn0004003	FBtr0086510	1	1	1	60	2R	15137424	15137442	AGCTGAGTTTCGAGAAGAC		59	15137463	15137484	GCGATATCAAATTTCACTACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18609	FBgn0034382	FBtr0086643	2	1	1	87	2R	14630818	14630837	AGGTGCTATACAATGGTCTC		58	14630688	14630706	AAGCTTTCTATGCAGTGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	IM2	FBgn0025583	FBtr0086664	3	1	1	115	2R	14274183	14274201	GTTCTTCTCAGTCGTCACC		59	14274341	14274360	CATTGCAGTATTTGCAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lolal	FBgn0022238	FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778	3	4	4	123	2R	14042986	14043404	TCACAGATGTAACACTCGC		59	14042819	14042838	ATAATGATCGGATGCTTCGA		59	NA	
Drosophila melanogaster	50	CG30110	FBgn0050110	FBtr0086820	2	1	1	60	2R	13768647	13768667	TAGTAACCCAAAGGTTAGAGG		58	13768607	13768625	TGCATTCGCATCTTTAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10931	FBgn0034274	FBtr0089545	2	1	1	60	2R	13637206	13637225	ATATGTGAAGTTCTCACCGA		58	13637248	13637266	AAGGGTGTTGTTCAATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6406	FBgn0034269	FBtr0086884,FBtr0086883	2	2	2	115	2R	13623770	13623844	AGTTATGGATCTGATCCTGC		58	13623674	13623692	AACATGGCGAAATAGATGG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15609	FBgn0034180	FBtr0114626,FBtr0087019,FBtr0114627	2	3	6	111	2R	12900872	12900892	GGCTTTAGTGAAATTACGGAC		59	12900271	12900799	ACGAAGGTACACTTTGAGG		59	NA	
Drosophila melanogaster	50	CG34457	FBgn0085486	FBtr0112763	3	1	1	111	2R	12558653	12558730	ACCGCAGTAAATTATCATGC		58	12558803	12558822	GGTATATCTTCTCCTTCGCT		58	NA	
Drosophila melanogaster	50	CG4409	FBgn0034128	FBtr0113085	1	1	1	111	2R	12331525	12331543	GTACGCCCTATTCTTCGAC		59	12331618	12332182	CATTGAGTTCTGCAAACCG		59	NA	
Drosophila melanogaster	50	CG7786	FBgn0034096	FBtr0087190	1	1	1	99	2R	12122337	12122355	GAACAATCCGTCCTACTCC		59	12122256	12122274	TAGAGTTTCCGACGATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shark	FBgn0015295	FBtr0087244	1	1	1	95	2R	12087846	12087864	ATGCTGCAGTACATACTGG		59	12087710	12087787	CAGATAATGCATGCCACAC		59	NA	
Drosophila melanogaster	50	CG33460	FBgn0053460	FBtr0100642	2	1	1	142	2R	11582008	11582028	GATATCCCAATGAATTGCCAG		59	11582131	11582222	AACCGGCATAATGTAGTCTG		59	NA	
Drosophila melanogaster	50	CG12963	FBgn0034031	FBtr0113082	2	1	4	81	2R	11443854	11443932	TTGATAAGGGCCTATATCTGTC		58	11443973	11449328	CATTACGATCAGATTCGTGC		59	NA	
Drosophila melanogaster	50	CG10202	FBgn0033969	FBtr0087464	2	1	1	60	2R	10707361	10707379	GGAACTCCTGAAGACACTC		59	10707319	10707337	GTTCTTGATCTGCAGATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr51A	FBgn0033942	FBtr0087514	3	1	1	60	2R	10400297	10400315	ATGGTCCTTCGTTCAATCC		59	10400255	10400274	TATTTGCCGATCATAGAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Als	FBgn0033920	FBtr0087540	2	1	1	80	2R	10158935	10158953	TAGCCCTTCAGAATTTGGC		59	10158994	10159075	CATATAGACGAACGAAATGTCC		59	NA	
Drosophila melanogaster	50	Cp1	FBgn0013770	FBtr0087592,FBtr0087591,FBtr0087593	1	3	3	174	2R	9854325	9854343	GAACAAGCACAAGATTGCC		59	9854541	9854559	TCCCTTGAAGCTTTCATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	synaptogyrin	FBgn0033876	FBtr0087645	2	1	1	60	2R	9731508	9731526	AGAAAGCGTTATGTCATGG		57	9731395	9731414	CGAAGTACATGAATGTCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18368	FBgn0033864	FBtr0087627	3	1	1	60	2R	9555880	9555899	CCTCTCACAGATCATATCCA		57	9555921	9555940	CGTTTGGGTTCCTTAAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10814	FBgn0033830	FBtr0087720	2	1	1	76	2R	9264910	9264928	GTATAGAGTGGTCCGATGG		58	9264852	9264870	ATTCGCGTATGAGAAGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17042	FBgn0033823	FBtr0087752	1	1	1	60	2R	9152835	9152854	AGACTGGATAAACTGGAACG		59	9152875	9152959	GCTTGTATATGATCTTCTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8776	FBgn0033764	FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869	3	5	5	98	2R	8548250	8548271	CATAAGGTCAACTTCTATAGCC		58	8548117	8548192	TACCAGAAAGCTGAAGAAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8816	FBgn0033754	FBtr0087891	2	1	1	96	2R	8456978	8456996	GTACGATTGTCCCATTCTG		57	8456845	8456863	ATCACAGCCATGATACTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	fdl	FBgn0045063	FBtr0087946,FBtr0087947	1	2	2	123	2R	8376192	8376277	GAAAGAAGCAGGTACTGGG		59	8376087	8376105	CTAGGATCAGTCCACAAGC		59	NA	
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0087931,FBtr0087929,FBtr0087930	2	3	6	61	2R	8337239	8337257	CAGATTAGCAGCGATATGC		58	8337282	8339492	TATTCGCATTTGCTTGCAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	SIP2	FBgn0061197	FBtr0089670,FBtr0089669,FBtr0089671,FBtr0089668	2	4	4	97	2R	8191550	8191640	CAGATAAGCGATCTAAGGGAG		59	8191473	8191491	ATCTTGGACACTTCCTTGC		59	NA	
Drosophila melanogaster	50	SIP2	FBgn0061197	FBtr0089670,FBtr0089669,FBtr0089671,FBtr0089668	3	4	4	97	2R	8193373	8193451	AGACAAAGCTACATGGTCTC		59	8193295	8193313	TGAGCCTACCTTTGTTTGG		59	NA	
Drosophila melanogaster	50	RpS11	FBgn0033699	FBtr0088005,FBtr0088007,FBtr0088006	3	3	3	127	2R	8087085	8087348	CTGTGTTCAGAGATGTTGAG		58	8086977	8086996	CTTCTTGAAGCTCTTCTTGG		58	NA	
Drosophila melanogaster	50	CG13211	FBgn0033613	FBtr0088172	1	1	2	121	2R	7184849	7184867	ATCCAACATGGTTGACCTC		59	7182270	7182288	ACAGCTTGTAGCCAAAGAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG18335	FBgn0033610	FBtr0088177	3	1	1	60	2R	7178109	7178129	TTACCGACATCCCATATTACC		59	7178069	7178088	AATCTGACTCACTTTGTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	shn	FBgn0003396	FBtr0088099,FBtr0088100,FBtr0088101,FBtr0088098	1	4	4	101	2R	7098299	7098384	GGCAAGCAAGTAAATGTGG		59	7098446	7098467	CTTCTTCTGCAACAATATCTCC		59	NA	
Drosophila melanogaster	50	CG7686	FBgn0027525	FBtr0088245	3	1	1	60	2R	6725378	6725396	GAGTACTCCATGTCCTCCA		59	6725336	6725354	GATCGTCCAATAGGGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	1	12	12	88	2R	6499952	6500255	GCATATGGACATGTATAACTCG		58	6500304	6500322	TATAGTGCGGTTCCTTCTG		58	NA	
Drosophila melanogaster	50	CG12909	FBgn0033507	FBtr0088348	2	1	1	65	2R	6198385	6198404	ACTAAGATCGTTACCAAGCA		58	6198432	6198450	CTTGAGCAGCTTCTTACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pka-R2	FBgn0022382	FBtr0112901	3	1	5	93	2R	5884718	5885219	CAAGCTAGCATTCCTAGAC		57	5884643	5884662	CATTTGCTCATAGATCACGA		57	NA	
Drosophila melanogaster	50	CG10459	FBgn0033440	FBtr0088468	2	1	1	60	2R	5595784	5595803	AACAAGGGAATCTACGTGTG		59	5595824	5595844	TGTCGTAGTCGTATTTGAAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL31	FBgn0025286	FBtr0088526,FBtr0088525	1	2	3	113	2R	5475179	5475197	TCTGAACAAGCACATCTGG		59	5475343	5475362	TAAGTGTACAGCTTGTTGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rep2	FBgn0028408	FBtr0112930,FBtr0088597	3	2	2	148	2R	5184910	5184928	TTGTTCTGGAGTGTGATGG		59	5185039	5185788	CGGTATAGCTGATATGGCAG		59	NA	
Drosophila melanogaster	50	Su(var)2-10	FBgn0003612	FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088572,FBtr0088578	3	6	9	80	2R	5005350	5005432	AGCTGCCTAATGTCATTCC		59	5005475	5005494	CATTGGACGTGACATTAACG		59	NA	
Drosophila melanogaster	50	CG8172	FBgn0033362	FBtr0088667,FBtr0113057	2	2	3	91	2R	4898800	4898818	CATGATCTGGTCTTGTTGC		58	4896715	4898745	AGTGTATTATGTCGCTCGT		58	NA	
Drosophila melanogaster	50	lin	FBgn0002552	FBtr0088651	1	1	1	60	2R	4803487	4803505	CAAGCAAGAGCTGAATGAC		59	4803527	4803547	CTCGAAGTTAAATAGCTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8690	FBgn0033297	FBtr0088752	2	1	1	127	2R	4360989	4361010	CACACTTGAAGATATACAAGGC		59	4361098	4361176	CGATTTGGTCAGAGATCGT		59	NA	
Drosophila melanogaster	50	CG30369	FBgn0050369	FBtr0088795	3	1	1	218	2R	4146917	4146935	GTCCTTTGGTCGAGTTCTC		59	4147117	4147135	CTAAGATCACGAGGAGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pnut	FBgn0013726	FBtr0088793,FBtr0088792	2	2	2	60	2R	4126447	4126468	GAGGTGCATCTATTTAAGAAGC		59	4126488	4126507	AGATCTTGATCTTGTGCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11508	FBgn0033267	FBtr0088817,FBtr0114490,FBtr0088818	1	3	3	60	2R	4017216	4017234	CAGTACGTTTAATCGCAGG		58	4017174	4017192	CACGATGAAGCTATAGCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sut1	FBgn0028563	FBtr0088777	1	1	1	165	2R	3972208	3972226	TTGGTGTAATCAGACCCTG		58	3972355	3972567	AAGAAAGCATGCTTTCCTG		58	NA	
Drosophila melanogaster	50	CG12769	FBgn0033252	FBtr0088828,FBtr0088827	2	2	2	120	2R	3942343	3942423	CCTCACTGATCAAGGTCTC		59	3942241	3942259	TTGTTGTTACTCTCCAGCG		59	NA	
Drosophila melanogaster	50	CG1882	FBgn0033226	FBtr0088835,FBtr0088837,FBtr0088834,FBtr0088836	2	4	4	63	2R	3700908	3700926	CTTCTTCGTGGATATCGGG		59	3700953	3700971	ATTCATGCTGATGGTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1882	FBgn0033226	FBtr0088835,FBtr0088837,FBtr0088834,FBtr0088836	1	4	4	62	2R	3701151	3701169	ATTTGTGAAATCGGTGGAG		58	3701195	3701213	CCCAACAGAATCATGTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1941	FBgn0033214	FBtr0088927	3	1	1	124	2R	3598910	3598988	CATTAGGACAGGGTCTTCG		59	3599073	3599094	CCGTTATCCTCTTTACAAAGTC		58	NA	
Drosophila melanogaster	50	CG30491	FBgn0050491	FBtr0088919	2	1	1	80	2R	3543594	3543670	GATCTACTCAAGAAATCCTCAC		58	3543710	3543729	GCCAGTGTTTATTTCTCCTC		58	NA	
Drosophila melanogaster	50	Or43a	FBgn0026389	FBtr0089051	3	1	1	83	2R	3120819	3120932	CCGATGGAGATAAGAGTCG		59	3120754	3120772	AAAGTAGGAGTAGGACGCA		59	NA	
Drosophila melanogaster	50	Tsp42Ek	FBgn0033133	FBtr0089031	2	1	1	100	2R	2931522	2931541	ATACATAGAGAAGTTCGCCG		59	2931604	2931723	AACACTCGTACACTGTCTG		59	NA	
Drosophila melanogaster	50	Tsp42Ea	FBgn0029508	FBtr0086172,FBtr0086171,FBtr0086173	2	3	3	109	2R	2890788	2890806	CAGAAGGACAAGTACCTGG		59	2890878	2890963	CAGCATTTCATGCTGATCTG		59	NA	
Drosophila melanogaster	50	CG30431	FBgn0050431	FBtr0085991	2	1	1	61	2R	2091560	2091579	ATGATATTCCCTCGTACTGG		58	2091603	2091621	ATGATGCGGAGTGTTTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Src42A	FBgn0004603	FBtr0085968,FBtr0085967	1	2	2	80	2R	1896789	1896808	TACGGTTAAGCATTATCGCA		59	1896851	1896936	TGAAGGGTTCTGAATGTCG		59	NA	
Drosophila melanogaster	50	His-Psi:CR33811	FBgn0053811	FBtr0091815	1	1	1	60	2L	21439014	21439033	GAATTATTCCGCGTCATCTG		59	21439056	21439074	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR33315	FBgn0053315	FBtr0081172	3	1	1	81	2L	19075368	19075386	CAACCATCTGTTCCATCTG		58	19075305	19075323	GAAGTCGTCACTCACTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41121	FBgn0069930	FBtr0111251,FBtr0111250	3	2	2	90	2L	22708255	22708273	GTAGTGATGTATCTCCGCT		58	22709300	22709318	CTGTTAGGTTGTCCTTCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2225	FBgn0032957	FBtr0100618,FBtr0085918,FBtr0085914,FBtr0085915,FBtr0085917	2	5	5	107	2L	21669234	21669381	GTTACAACGGTAACGATCAG		58	21669146	21669166	CACACCCATAGCTTAAATCTG		58	NA	
Drosophila melanogaster	50	His4:CG33905	FBgn0053905	FBtr0091909	1	1	1	60	2L	21434850	21434868	GAACGTAATTCGTGATGCC		59	21434808	21434826	GGCTGTAACTGTCTTCCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His3:CG31613	FBgn0051613	FBtr0085894	1	1	1	60	2L	21425563	21425581	TCGAAGATACCAACTTGTG		57	21425605	21425623	ATGTCTTTGGGCATTATGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mio	FBgn0032940	FBtr0081524,FBtr0081527,FBtr0081528,FBtr0081526,FBtr0081525	2	5	5	84	2L	21286543	21286562	TAGTCTTGATGAGCTACGTC		58	21286415	21286496	ATTTGTAACAGCTGGACGA		59	NA	
Drosophila melanogaster	50	CG31626	FBgn0051626	FBtr0081485	1	1	2	62	2L	21233482	21233635	GAAACTCTTCGTCTTCGCT		59	21233438	21233456	TTAAGGTGGGAAACATCGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG9328	FBgn0032886	FBtr0081416,FBtr0081415	2	2	2	116	2L	20813271	20813289	GATCCTGCCTAAGAAGCTC		59	20813444	20813462	TCTGATTTCTGGTTCAGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	cad	FBgn0000251	FBtr0081413,FBtr0081412	2	2	2	102	2L	20771294	20771313	CAGATGTACTACAACTCCCA		58	20771378	20771396	TCTGAACGAAGTTATCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13958	FBgn0032825	FBtr0081295	2	1	1	60	2L	19828687	19828706	AACTATGTGCTCTTCAACCC		59	19828729	19828747	TGCGTATCTTGTACTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10132	FBgn0032798	FBtr0081247	1	1	1	81	2L	19524104	19524122	GGTAACTATGAGGCAGCAG		59	19524164	19524249	TGAGAGTGACCTTAAACTTTCC		59	NA	
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0081014,FBtr0100313,FBtr0081020,FBtr0100314,FBtr0081019,FBtr0081013	1	6	12	92	2L	17664218	17665390	ACCATTATGCAGGTTACGG		59	17664144	17664162	ATTATCCGGATCAATGCCC		59	NA	
Drosophila melanogaster	50	Ugt36Bc	FBgn0040260	FBtr0080911,FBtr0080912	3	2	2	135	2L	16800511	16800609	AGTTCTATGACCGTCTTTGG		59	16800707	16800725	ATTACTCCAGGCACATTCG		59	NA	
Drosophila melanogaster	50	CG5968	FBgn0032588	FBtr0080872	1	1	1	60	2L	16549560	16549578	GAATCTCCGGAGAAGTCAC		59	16549518	16549536	ACGATAAAGGAGTCTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4793	FBgn0028514	FBtr0080794	3	1	2	86	2L	15926120	15926141	GATCATGTTATCAGGCTTAGTG		58	15926991	15927010	GTTTATGGGATTATGGAGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG18477	FBgn0028864	FBtr0080756	1	1	1	60	2L	15662488	15662506	CTTGCCAATAGTCAGTACG		57	15662529	15662548	AATGTATGTTGATCCCAACG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	ms(2)35Ci	FBgn0011239	FBtr0080731	3	1	2	63	2L	15293140	15293219	GATTGCCTTTGTATCTGCG		59	15293246	15293264	TCACTAAACCTCCGATTGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG33679	FBgn0053679	FBtr0091659	2	1	1	60	2L	15058455	15058476	CAACATACACGTTAAGCTTCTG		59	15058497	15058515	AGTGATGAATCTCACGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32971	FBgn0052971	FBtr0080621,FBtr0114463,FBtr0114462	1	3	3	60	2L	14277528	14277548	CTAAAGGATAACGTCCTAAGC		57	14277567	14277588	GGGAAACTAATTTAAGGAGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	smi35A	FBgn0016930	FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289	3	5	5	91	2L	14195795	14195814	CGGATGGATCTCATAATGTC		57	14189224	14195741	CAGGTTCAAGCTCATTAGC		58	NA	
Drosophila melanogaster	50	bgm	FBgn0027348	FBtr0080590	3	1	1	80	2L	14015967	14015986	AATTATGGCGACTATCCTGC		59	14016026	14016144	CTGCTCATATTGTTTGTAGGTG		59	NA	
Drosophila melanogaster	50	CG18146	FBgn0028939	FBtr0080589	1	1	2	85	2L	13980364	13980382	TAACAATGCGTAAGCACCA		59	13980429	13980510	CAAGTAAGTCTCAGTTCTGGT		59	NA	
Drosophila melanogaster	50	CG16873	FBgn0028936	FBtr0080586	3	1	1	81	2L	13971670	13971747	CGATTGCTATCAGAAGTGC		58	13971791	13971810	CTCATGGTAGGTATATCCCG		58	NA	
Drosophila melanogaster	50	CAH1	FBgn0027844	FBtr0080539	1	1	1	93	2L	13808959	13809044	TCAATCCTGGCTATTGCTG		59	13809100	13809119	TGCTCCAGCTTAAAGATCTG		59	NA	
Drosophila melanogaster	50	Rab6	FBgn0015797	FBtr0080361	1	1	1	60	2L	12108552	12108571	CTGATACCCTCGTACATACG		59	12108511	12108530	TGTTGGTGATATCGTAAACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RfC38	FBgn0028700	FBtr0080225	2	1	1	71	2L	11129719	11129737	ATCGATCTCATCAAGCAGG		59	11129666	11129684	AATCACCTTGAATTCCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Csl4	FBgn0032346	FBtr0080226	3	1	1	155	2L	11123438	11123456	GGATGAGACTGTAGTCTGC		59	11123247	11123319	ACCACCTGGCATTTATCAC		59	NA	
Drosophila melanogaster	50	CG14069	FBgn0032315	FBtr0080175	3	1	1	61	2L	10910489	10910509	CGGATTGTTAATGTTCATCCC		59	10910448	10910466	ACCAGTTGGCTATTTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6750	FBgn0032292	FBtr0080122	1	1	1	60	2L	10731935	10731954	GGGAAACTTTATTAACGTGC		57	10731894	10731912	AAACATCCAGTTGATCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31716	FBgn0051716	FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012	1	6	6	83	2L	10400605	10400623	AAGTCGAAGGATGCTTACC		59	10400669	10400743	ATAGCGCATCTGTTACTCTG		59	NA	
Drosophila melanogaster	50	CG13133	FBgn0032181	FBtr0079969	3	1	1	76	2L	10091815	10091833	CGATCCTACAAGCTACCAC		59	10091757	10091775	ATCATCAGTATTCCGTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL13	FBgn0011272	FBtr0079888,FBtr0100164	3	2	2	171	2L	9968212	9968230	GAGAAGAAGTTCAAGGCCT		59	9968434	9968452	TGTAGACAGAACGATCAGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG5850	FBgn0032172	FBtr0110943,FBtr0079890	3	2	2	102	2L	9962390	9962408	AGTGCTACTCAACGTACTG		59	9962048	9962326	GATGAGGAAATTCTGAAGCAG		59	NA	
Drosophila melanogaster	50	CG4658	FBgn0032170	FBtr0079886,FBtr0079887	1	2	3	88	2L	9957825	9957843	GAAGCTAGCCGAGATTCTC		59	9957892	9957972	GAAAGACTTGTGACACAAAGAC		59	NA	
Drosophila melanogaster	50	CG31710	FBgn0051710	FBtr0079849	3	1	1	93	2L	9703313	9703331	AAGAGGATCCCGTATACCA		59	9703149	9703167	GACTGGGCTTTATCTCGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32982	FBgn0052982	FBtr0079771,FBtr0110960,FBtr0079772	1	3	3	82	2L	9161941	9161959	ATAATGGCAACGAACTGGA		59	9162005	9162086	CATTGGTTGAACTGAGTGC		59	NA	
Drosophila melanogaster	50	CG8292	FBgn0032004	FBtr0079632	2	1	1	60	2L	8217796	8217814	GCCACATTACAGACTTGAG		58	8217754	8217775	ATACCCTTATCCGTAAACTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trf	FBgn0010287	FBtr0079542	1	1	1	60	2L	8073609	8073627	ATCTTCGTCAACGGAAAGG		59	8073651	8073669	AGTCCATAATGTCCTTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7367	FBgn0031976	FBtr0079547	3	1	1	86	2L	8028026	8028044	CACAGCTCATCAAGTTCGA		59	8027884	8027905	GCGGAAACTCAAAGTTATTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rab30	FBgn0031882	FBtr0079426,FBtr0079428,FBtr0079427	1	3	3	60	2L	7031918	7031936	AGCTACAAATCTGGGACAC		59	7031876	7031894	TAGTAGCTTTGCGTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sip2	FBgn0031878	FBtr0079358	3	1	5	71	2L	6963745	6963763	CAGTTTCTAATGACCGAGC		58	6963503	6963522	ACTATAGCGCATATCCTTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13773	FBgn0042092	FBtr0079372	1	1	1	60	2L	6907245	6907266	GAGAACTATTGCTAGAGAATGG		58	6907108	6907126	GGACTGCCAAACTTAATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sens-2	FBgn0051632	FBtr0079341	2	1	1	273	2L	6832406	6832424	TGTACTCGTGCATGAAGTG		59	6833112	6833131	CAGTAGTTGCAGGGATAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31910	FBgn0051910	FBtr0079304	2	1	1	60	2L	6745510	6745528	TGAATTGATGTTGGAACCC		57	6745468	6745487	TGATCTGTTATCCGATCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	homer	FBgn0025777	FBtr0079307,FBtr0079306,FBtr0110778	1	3	3	101	2L	6721445	6721527	TGCTCTTCAGGAATCAACTG		59	6721363	6721381	CACAGCTGCTCCATATCTC		59	NA	
Drosophila melanogaster	50	CG9596	FBgn0031832	FBtr0079331,FBtr0079332	1	2	2	60	2L	6560922	6560941	CTATCTGCTGTACGAGAGTG		59	6560881	6560900	TATAGAGTTGAGCATGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9507	FBgn0031808	FBtr0079255	1	1	1	61	2L	6382407	6382425	ATCCGAATCCTACGTAAGC		58	6382450	6382468	CCAAGATTTGGCCAAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14014	FBgn0031718	FBtr0114511	1	1	1	60	2L	5550524	5550543	CAGTTGTATCTGATGAACGG		58	5550483	5550501	CCATTGCACTTGTAGTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cl	FBgn0000318	FBtr0079095	1	1	1	137	2L	5520502	5520520	CAAGGACGAGAAAGGAGAG		59	5520694	5521147	AAATCCTTCCAGTATGCCC		59	NA	Nonspecific
Drosophila melanogaster	50	Sgs1	FBgn0003372	FBtr0077393	3	1	1	60	2L	4937566	4937585	AAAGCTAATTACGACTGGGA		58	4937608	4937626	ATCCGGGTATTATCTCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3294	FBgn0031628	FBtr0077382,FBtr0077381	3	2	2	84	2L	4795558	4795847	TACACAAACGAACGATCTG		57	4795895	4795913	AGAACTCCACGTTTAGTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15440	FBgn0031607	FBtr0077454	3	1	1	60	2L	4454130	4454149	CTTCGTCAACTTCATATCCG		58	4454089	4454107	CTTACCGTTTAGCTTGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sr-CIV	FBgn0031547	FBtr0077560	3	1	1	174	2L	3523284	3523302	AACCTACCACTTCCTATCG		58	3523062	3523146	GTCGAACTTGTAGGGATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Rbp9	FBgn0010263	FBtr0077636,FBtr0077635	2	2	7	154	2L	2955494	2961223	ATTATCCATCACAACAGCGT		59	2961340	2961358	CTGTTGGTCACATTGTTGG		59	NA	
Drosophila melanogaster	50	CG8814	FBgn0031478	FBtr0077629	3	1	1	99	2L	2876367	2876385	GGAAAGCTATACTTGCGGA		59	2876818	2876839	GCTTTCTAGGATAGAAGAAAGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG31949	FBgn0051949	FBtr0077757	3	1	1	60	2L	2300481	2300499	CTGAATGAGCAACTCTCCT		58	2300521	2300541	GAACCATTGTCAGTATAAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7261	FBgn0027509	FBtr0077829	1	1	1	131	2L	2150680	2150698	GGTTATTTGCCGATCACAC		59	2150791	2150863	TGGAGGCATACTTGATAAGAG		58	NA	
Drosophila melanogaster	50	lwr	FBgn0010602	FBtr0078081,FBtr0078082	3	2	2	164	2L	541831	541849	CTACACCATCTACTGCCAG		59	541685	541703	AGAGCATTCCAAACAAACG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	1	7	8	80	2L	119224	119297	TATAATGCAGACTGATGTCCTG		59	119165	119184	TTTCCCAACTTCAAGTTTGC		59	NA	
Drosophila melanogaster	50	CR41509	FBgn0085792	FBtr0114245	1	1	1	80	YHet	327654	327673	AGAATACGAAACTGGAACAG		57	327522	327612	CTTGATCATCCTTTACTGCT		57	NA	Nonspecific
Drosophila melanogaster	50	stnB	FBgn0016975	FBtr0111138,FBtr0111137	3	2	2	81	X	22386913	22387148	ACCATCAAATTTCAACCACC		58	22386851	22386869	GAAGTTCACGATTCTTGGG		58	NA	Nonspecific
Drosophila melanogaster	50	CG34334	FBgn0085363	FBtr0112536	3	1	1	61	X	22276462	22276480	GCACATTAAGGGATTGACG		58	22276505	22276523	AGTGACCAAATATCTCGGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41476	FBgn0084036	FBtr0111183	1	1	1	249	X	22177018	22177036	CTTGATTCTGCAATCCTCC		58	22169233	22170005	TGTGAGTATCGTGTTTCCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1529	FBgn0031144	FBtr0114624	1	1	2	118	X	20902536	20902606	TATATGTGAAGGAGGAGCC		57	20902436	20902454	CTTCGACAGATCTACCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Peritrophin-A	FBgn0022770	FBtr0077335,FBtr0077336	2	2	2	60	X	20119015	20119033	TAGGTTTACACTGGTTCGC		59	20119056	20119075	AAGTAGTTGGTTAGTCGGAG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG33491	FBgn0053491	FBtr0089603	1	1	1	215	X	20073412	20073516	TGATGGCCATAGTTGAGTG		59	20072823	20072841	TGTAGTCACCAGAGGTCTC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG14200	FBgn0031023	FBtr0074721	2	1	1	278	X	19404311	19405163	AAGAAAGCCGAAGGAATCC		59	19405403	19405423	GAATACGGCTTTATCATTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15056	FBgn0030918	FBtr0074560	1	1	1	79	X	18309563	18309654	CTCGTTCAGCGTAATTAGC		58	18309697	18309715	AGCTAATGCGAGACTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4880	FBgn0030803	FBtr0074342	1	1	1	60	X	16781738	16781756	ACGTGAATACACTCTCCTG		58	16781780	16781798	GATAGCATGCTCTTCACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9723	FBgn0030768	FBtr0074376	1	1	1	68	X	16548217	16548235	GATTCTGATCACCTACCGC		59	16548100	16548185	ATCAGGAACGAGATCAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pp2B-14D	FBgn0011826	FBtr0074294	2	1	1	67	X	16452995	16453013	CGATGATCGATATTGAGGC		57	16452946	16452964	CATCAGGTCGTAGAACTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	disco	FBgn0000459	FBtr0100384,FBtr0074250	1	2	2	63	X	16105838	16105856	CTCCTCTCCGAAATGTACC		59	16105793	16105811	GATGGTGGTTGTATTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nipsnap	FBgn0030724	FBtr0074258,FBtr0074257,FBtr0074259	3	3	3	278	X	15965372	15965390	TCTTAGCTTGATGCAGGAG		59	15964886	15965070	TGCAGAGATTTGTAACACC		57	NA	DesignRelaxed
Drosophila melanogaster	50	dpr18	FBgn0030723	FBtr0074206	2	1	1	81	X	15959723	15960410	CAAGTTCTATACACGACATCC		58	15960453	15960471	GTAATGAACGATTCTCGCC		58	NA	
Drosophila melanogaster	50	CG6227	FBgn0030631	FBtr0074011	3	1	1	131	X	15241247	15241267	CAAGAACTTCTATGTCGAGGT		59	15241360	15241519	TGTGCCCAAGTCTTAATGG		59	NA	
Drosophila melanogaster	50	RpL37a	FBgn0030616	FBtr0074027	1	1	1	234	X	15033055	15033073	CTACCACATCCAGAAGTCC		59	15032774	15032793	GGATATACATCTTGGGACAC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12481	FBgn0030542	FBtr0100281	3	1	1	81	X	14081510	14081530	TATTACATCAAACCGGGTCAG		59	14081573	14081591	CGTCATCCTGATCGTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32654	FBgn0052654	FBtr0113445,FBtr0113444	3	2	2	61	X	12498245	12498263	CGATAGCTCTGCTACAGAG		59	12498288	12498366	CAAGTAGAATAAGCCTGGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Ant2	FBgn0025111	FBtr0073426	3	1	2	140	X	10674342	10674361	ATAGTCGATTGCTTCATTCG		58	10674145	10674241	GAGGAATACCGATTTGTACAC		58	NA	
Drosophila melanogaster	50	CG32699	FBgn0052699	FBtr0110850,FBtr0071369	2	2	2	130	X	9468297	9468392	ATGGACCTGGAGTATTACG		58	9468185	9468204	ATTGTTGGCATACAGATTGG		58	NA	
Drosophila melanogaster	50	CG12106	FBgn0030100	FBtr0071306	2	1	1	60	X	9088669	9088687	GACCATCGTTGAGTTTGTC		58	9088710	9088729	CTTGAGACGATTGATTAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mei-P26	FBgn0026206	FBtr0071303	3	1	1	93	X	9064243	9064342	ATCGCTATACGAGACAACG		59	9064398	9064417	CAATGCGATAGAGGAATGTG		58	NA	
Drosophila melanogaster	50	Ost48	FBgn0014868	FBtr0071344	2	1	1	60	X	9052219	9052237	AAGCTCACCTACAAACTGG		59	9052177	9052198	GATATTCACCGTATTTGGACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slpr	FBgn0030018	FBtr0071184	1	1	1	93	X	8069401	8069419	AGATGTACAACACGCAGAG		59	8069260	8069346	TCGGAGAATTTGGAATAGGTG		59	NA	
Drosophila melanogaster	50	dpr14	FBgn0029974	FBtr0071134	2	1	1	101	X	7800355	7800373	GTCATTTCGAAGATTCCGC		59	7800205	7800290	CGTCTTGACACTGATTCCT		59	NA	
Drosophila melanogaster	50	CG15896	FBgn0029858	FBtr0070898	3	1	1	81	X	6186684	6186768	CTTCTTGACCAGCAATCTG		58	6186813	6186831	GAAGAAGTCTGTCTCCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12688	FBgn0029707	FBtr0070653	3	1	1	64	X	4275989	4277077	AAGAAGATCCAAGCATCCC		59	4277105	4277123	GGAGTGTCCTCTAAGTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15375	FBgn0029694	FBtr0070637	1	1	1	281	X	3995742	3995836	ATTTCGTCAAGGTCATGAG		57	3996282	3996300	ATATAAGGCGGTACCTTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	ng3	FBgn0010295	FBtr0070539	3	1	1	60	X	3135855	3135875	GAGGACGTATCACTATACACG		59	3135815	3135836	CCTATAGATATGTCGTATCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4194	FBgn0025627	FBtr0070328	1	1	1	60	X	1962708	1962727	GAATCTTGGGAATCCTCAGG		59	1962750	1962768	CAATAGCTGTTTGTGGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Appl	FBgn0000108	FBtr0070109	1	1	1	81	X	466093	466190	TAAGTCAGAAACGCCTTGAG		59	466234	466252	TACTTCTCCTCGAGATCGG		59	NA	
Drosophila melanogaster	50	l(1)sc	FBgn0002561	FBtr0070074	1	1	1	60	X	304298	304317	CTCGTCACATCTACAATTCC		58	304339	304358	TAATCGTTATAGCTGCTGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40719	FBgn0085511	FBtr0113924	2	1	1	278	U	9970997	9971015	TAGCCAGAAGAATAAGCCG		59	9970737	9970755	TTGGACACAATTCTAAGGC		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG40162	FBgn0058162	FBtr0113815	2	1	1	70	U	588244	592701	TAATCTCATTCGAGACGGAG		58	588193	588211	CCAAATCGTTGTTAACGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40204	FBgn0058204	FBtr0113834	3	1	1	73	U	497479	497500	TGAACTATCACAAGATCCTGTC		59	497533	497552	TACTTACCTTCACAACGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34036	FBgn0054036	FBtr0100091	1	1	1	184	4	352112	352130	TGGTTATGCTTCTCAAAGC		58	350046	350907	CACTCGTATAGCTTGATCAG		57	NA	InUTR
Drosophila melanogaster	50	pasha	FBgn0039861	FBtr0085820	1	1	1	65	3R	27446120	27446138	TAACGGGCAACAATAAGGA		58	27446167	27446241	AAACAGACAGATCGCTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34298	FBgn0085327	FBtr0112494	2	1	1	61	3R	25825814	25825833	TAGATAATGTTCCCAGCAGC		59	25825857	25825936	CATGTTGCTCACATTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trp	FBgn0003861	FBtr0085513	2	1	1	103	3R	25743589	25743609	TGGATCTTTGGAACATAGTGG		59	25743449	25743524	GAACCAGAGATCACGATGG		59	NA	
Drosophila melanogaster	50	CG7568	FBgn0039673	FBtr0113306	1	1	1	64	3R	25426419	25426438	CACTTCGATCTACTTGACCT		58	25426323	25426341	AATAGGATCCTGTCTGCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31445	FBgn0051445	FBtr0085401	3	1	1	99	3R	25067428	25067446	ACGAGACCTTATTCCTTGG		58	25067289	25067367	CATGTAGCGTTTAAATGACCC		59	NA	
Drosophila melanogaster	50	CG5639	FBgn0039527	FBtr0085202	2	1	1	98	3R	23416040	23416059	ATGATTAGCAGGTCGTATGC		59	23415898	23415982	GTTGTGGTCATTCTTAAATCCG		59	NA	
Drosophila melanogaster	50	CG6599	FBgn0039513	FBtr0085166	3	1	1	80	3R	23187089	23187170	AGTCTTCAGATAAAGATGGCC		59	23187211	23187230	CTATCAAGGTGTCAATGCAC		58	NA	
Drosophila melanogaster	50	CG34293	FBgn0085322	FBtr0112489	3	1	1	83	3R	22991078	22991160	CTGATCAATGGATTCTTTCTGG		59	22991016	22991035	TAGGGTTTGCATGTAGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5909	FBgn0039495	FBtr0085114	2	1	1	90	3R	22987263	22987281	TACGGTCGGAATATACCAC		58	22987335	22987477	AACAAAGATGGAAGTCCCT		58	NA	
Drosophila melanogaster	50	CG34292	FBgn0085321	FBtr0112488	1	1	1	60	3R	22888143	22888164	TGATATCGAGCCTTATAGACTG		58	22888185	22888203	AAACCGACCACCATTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5111	FBgn0039343	FBtr0084880	1	1	1	60	3R	21333133	21333153	GTCAAGATGAATGACACTGAG		58	21333175	21333193	CATCCGATTCCTCATAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17462	FBgn0039251	FBtr0084718	1	1	1	60	3R	20751839	20751858	TTCAACGAGGTCTACAACTC		59	20751881	20751899	TGATCACCATTAGCGTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycB3	FBgn0015625	FBtr0084728	2	1	1	61	3R	20695892	20695910	TGGATGCTAAGAAACAGGA		58	20695849	20695867	CGTAGTCATCTTACTGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6995	FBgn0039229	FBtr0100424,FBtr0084699,FBtr0084700	2	3	3	153	3R	20647310	20647329	TTTGCACAAGAACAACACAG		59	20647445	20647531	ATAACGCTTGTTACCGAGG		59	NA	
Drosophila melanogaster	50	CG13623	FBgn0039205	FBtr0084679	3	1	1	186	3R	20355899	20355980	GAAATCTAATCCTAATGCGGC		59	20355733	20355751	AGCTGCTTATCCAAATCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6182	FBgn0039158	FBtr0084551	2	1	1	82	3R	19988339	19988358	TAAGGACATAAGGTCCTCGA		59	19988403	19988477	CGTCAAGATCCTTTACCGT		59	NA	
Drosophila melanogaster	50	CG5463	FBgn0039153	FBtr0084584	3	1	1	81	3R	19954273	19954291	TGATAAATCTCCAGGCAGC		59	19954151	19954229	AGTTCGATTAGCTCACTGAC		59	NA	
Drosophila melanogaster	50	CG33108	FBgn0053108	FBtr0084504	1	1	1	73	3R	19821935	19821953	ATGTAGGTCCTTTGGACTG		58	19821990	19822840	ATCGTAGGGCACTAGTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Tbp-1	FBgn0028684	FBtr0084452	3	1	1	204	3R	19579305	19579323	GACCTACAGAGCAGTACTC		58	19579548	19579566	AAGGTGGACTTTGTCTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31414	FBgn0051414	FBtr0113405	3	1	1	90	3R	19531434	19531507	CAGGATCATGTCTATAGATCCT		58	19531558	19531576	CCATATCAAAGTCGGAACC		57	NA	
Drosophila melanogaster	50	CG6733	FBgn0039052	FBtr0084352	2	1	1	85	3R	18924528	18924546	ATATAGGACCCACCAAGCT		59	18924594	18924670	ATGAACCTTCAATCCAAGCT		59	NA	
Drosophila melanogaster	50	CG17622	FBgn0038998	FBtr0113266	3	1	1	211	3R	18484174	18484452	CTGCTCCTCAGAATTCCAG		59	18484627	18484645	GATTGATGCAGCAATTTGG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG7046	FBgn0038979	FBtr0084259	3	1	1	87	3R	18319251	18319271	TATCTATGAAGCTCCGTTGTC		59	18319320	18319338	CATTGCTTCATCCTTGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6569	FBgn0038909	FBtr0113263	3	1	3	101	3R	17693194	17693212	ATGACCTCTCCAAACAGAC		58	17693033	17693129	CATTAGTCTCTGGTCCCTG		58	NA	
Drosophila melanogaster	50	rtet	FBgn0028468	FBtr0084009	3	1	1	81	3R	16935846	16935865	CGTCACATTTCTGATGTACC		58	16935909	16935984	CATGATTACACCCGTTGTC		58	NA	
Drosophila melanogaster	50	Dhc93AB	FBgn0013812	FBtr0084046	3	1	1	86	3R	16861279	16861382	GGGAACAGTGGTTATTCGA		59	16861211	16861229	TAAAGGCGATGTTCACCTC		59	NA	
Drosophila melanogaster	50	cdc2c	FBgn0004107	FBtr0083921,FBtr0083922	3	2	2	89	3R	16562387	16562464	CTGAAATGATTATGCGCCG		59	16562517	16562535	CATCAGGTGTGCTTAAGGT		59	NA	
Drosophila melanogaster	50	Surf6	FBgn0038746	FBtr0083854	3	1	1	61	3R	15730387	15730405	TTCTATCAGCGAGTCTTGG		58	15730290	15730363	TCTTCTTGTTTGGAGTAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34284	FBgn0085313	FBtr0112480	3	1	1	61	3R	14728338	14728356	ATTGGCTTTATCCCATTGC		58	14728295	14728313	TCTTGTGAAGATCGACACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7431	FBgn0038542	FBtr0083532	1	1	1	85	3R	13580957	13580975	CATTTGGATCTCCCTGGAC		59	13580810	13580908	TCACGGCCAAATATCTGTC		59	NA	
Drosophila melanogaster	50	CG16941	FBgn0038464	FBtr0083374	1	1	1	131	3R	12825467	12825485	AATGGACAGATGATAGCCG		59	12825297	12825374	GTCTTTGAAGAACATTCCCTC		58	NA	
Drosophila melanogaster	50	CG5205	FBgn0038344	FBtr0083147	1	1	1	81	3R	11314695	11314714	AATCTGAATGCGGAAATTGG		59	11314755	11314836	CAAACAAGTACGTGTAACTGAG		59	NA	
Drosophila melanogaster	50	CG31344	FBgn0051344	FBtr0083136	2	1	1	60	3R	11050488	11050506	ATTTGGAGCTACCTTCGTG		59	11050092	11050465	CTAAAGTAGCTCTGACCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3563	FBgn0038259	FBtr0082989,FBtr0113234,FBtr0082988	1	3	3	125	3R	10616865	10616883	GTTACAGTAGTGCCTCGAC		59	10616970	10619180	GATAAGTGGCTTGTATCTTGC		59	NA	
Drosophila melanogaster	50	Cys	FBgn0004629	FBtr0082980	3	1	1	84	3R	10395034	10395053	GTAGCTGGAAGTCTTAACAC		57	10394969	10394987	GCTGAGTCCAGATCTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3321	FBgn0038224	FBtr0082932,FBtr0082931	3	2	2	180	3R	10152756	10152776	ACCGTACCAATACAACTATCG		59	10153043	10153061	ATCTGCCGAACTTGATCAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Ipp	FBgn0016672	FBtr0082865	2	1	1	231	3R	9784907	9784925	CAATTTCACCAACCAACTG		57	9785120	9785422	GTCAATTGGATCGATCCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14368	FBgn0038162	FBtr0082859	3	1	1	170	3R	9451183	9451201	TCAAGTCTTGTGTCTAGGC		58	9451031	9451049	AACAACATCCTTCTCGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14369	FBgn0038159	FBtr0082789	3	1	1	139	3R	9418227	9418245	CATTGGAGCAGGAAATTGG		59	9418106	9418125	ATATGCCCAAGAATAGCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yellow-e3	FBgn0038150	FBtr0082759	2	1	1	172	3R	9229859	9229877	GGGTTATGGTCTAATCGTG		57	9229640	9229723	GAAAGTACAGAAAGCGGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mthl12	FBgn0045442	FBtr0082746	1	1	1	91	3R	9180805	9180825	AGTAAAGAAGGGAGTCAAGAG		58	9180875	9180947	GCACGAATTGTATGTAAGTCTG		59	NA	
Drosophila melanogaster	50	CG8774	FBgn0038136	FBtr0082740	3	1	2	89	3R	9124917	9124993	AAGATACGACGGATTACCG		58	9125046	9125064	TGAAGTTTCCTGTCTCCAG		58	NA	
Drosophila melanogaster	50	CG14380	FBgn0038124	FBtr0082733	3	1	1	82	3R	9014573	9014591	AATTATTCCAGGACCCGTC		59	9014700	9014719	GTAGAAGCGCAGTTAAACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6783	FBgn0037913	FBtr0100323	2	1	3	192	3R	7386919	7390171	GCTGATCACCCTAATTCCC		59	7386745	7386763	TAGGTGATGCAGATCTCGA		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Ugt35a	FBgn0026315	FBtr0082374	2	1	1	96	3R	6998143	6998164	CAATGTCACCGTAATCAATACC		59	6998001	6998086	AAATGCCGCCATTATTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14691	FBgn0037829	FBtr0082314,FBtr0082313	1	2	2	118	3R	6579330	6579348	ATCATGACCTTTGGGAGAC		58	6579166	6579249	AGAAAGGCAATTGACATCAG		58	NA	
Drosophila melanogaster	50	CG6208	FBgn0037789	FBtr0082195	1	1	1	60	3R	5946455	5946476	CAAGAAGACCTTCAAGAAATGG		59	5946416	5946435	TTGTAATGTGTTCACCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9448	FBgn0037734	FBtr0082091	3	1	1	106	3R	5533331	5533414	GGGCATGTGTTCTTTACTC		58	5533243	5533261	AGTAGTGTACTCCAGTCCT		58	NA	
Drosophila melanogaster	50	RpL34b	FBgn0037686	FBtr0082049	1	1	2	133	3R	5226743	5226934	AGTTTCGTCTCTTTGAGCA		59	5226565	5226583	TACTGGTAAACCAGACGAC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Or85c	FBgn0037591	FBtr0081899	1	1	1	87	3R	4337630	4337648	TATAGCTCGACCTCAGAGG		59	4337501	4337579	TACTTGAAGAAGGTCCGTC		58	NA	
Drosophila melanogaster	50	CG10068	FBgn0037473	FBtr0081611	1	1	1	60	3R	2952746	2952764	CATGGCCTTCAATCTAGTG		57	2952704	2952724	CACCACCAAATTGTAGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1137	FBgn0037454	FBtr0081705	1	1	1	116	3R	2385095	2385113	CTGATAAGGAGGCCTACCT		59	2384938	2384956	TATTGGCCTTTACCAGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33324	FBgn0053324	FBtr0081727	3	1	1	167	3R	2272024	2272183	GTTATCGCCAGTGTATCAC		57	2272314	2272332	GTGTTGCAACTAATCGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Xe7	FBgn0010772	FBtr0078729,FBtr0078728	2	2	2	96	3R	1493795	1493813	GTGATCCGTACCGAAAGAG		59	1493658	1493737	TCGAACTGAACATATCCTTCG		59	NA	
Drosophila melanogaster	50	CG31551	FBgn0051551	FBtr0078706	3	1	1	60	3R	1456546	1456564	GCTAAGATCTTCAAAGGCG		58	1456588	1456606	ACTGGAACTGATTGGTCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34357	FBgn0085386	FBtr0112568,FBtr0112567	2	2	2	138	3R	360240	363538	TACGTGATGTGGACTTAAGC		59	360121	360140	GTGCCAATGTAGATAGTGGA		59	NA	
Drosophila melanogaster	50	CG31523	FBgn0051523	FBtr0078938,FBtr0078935,FBtr0078936,FBtr0078937	2	4	4	92	3R	293416	293434	TTCTACTACATGATCGCCG		58	293283	293361	CACGAATTGAACCATTTGGA		59	NA	
Drosophila melanogaster	50	CG40057	FBgn0058057	FBtr0111159	3	1	2	125	3L	24518909	24518930	CGAATGCAATGGATATGATGTC		59	24518394	24518823	GATCTATGAGTGTGGCGAC		59	NA	
Drosophila melanogaster	50	CG41454	FBgn0084017	FBtr0111173	2	1	1	145	3L	23131361	23132879	AACATTCGTTGACTTTCCTC		58	23132987	23133005	AACAGCGACGGATATAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11437	FBgn0037165	FBtr0078505	1	1	1	61	3L	22462719	22462737	CTTAACAGATGTGGCAGCT		59	22462762	22462780	ATACTGTTGCAAAGAAGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7130	FBgn0037151	FBtr0078484	2	1	1	119	3L	22068662	22068680	GACGTCAAGAAGGGATACC		59	22068561	22068580	CTTATCAAAGAGCACTTCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	skd	FBgn0003415	FBtr0078328,FBtr0112830,FBtr0078329	2	3	3	80	3L	20989472	20989492	TTCTAACATTCGAGGAAGAGG		59	20989353	20989430	TGTCCATATGAGTGTCCCA		59	NA	
Drosophila melanogaster	50	fbl	FBgn0011205	FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188,FBtr0078190	3	5	5	105	3L	20383913	20383991	GAAGATCGATAGGGTCGTC		59	20384060	20384078	CTTCATTGTGCCATTGGAC		59	NA	Nonspecific
Drosophila melanogaster	50	CG7323	FBgn0036943	FBtr0074863	3	1	1	87	3L	20147927	20148008	TGACTGATTTGTTCCTAGCC		59	20147859	20147877	ACATTGGAGAACAGTCGAG		59	NA	
Drosophila melanogaster	50	CG9231	FBgn0036887	FBtr0074972	1	1	1	100	3L	19578929	19578947	AGAGACGATCAAGAACCAC		59	19578783	19578868	GACTAACGAAATTGGGAATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14074	FBgn0036818	FBtr0075061	2	1	1	60	3L	18860005	18860024	TGGTCAATTACTAAACCCGA		58	18860047	18860065	GGAGGAGTGTTCCTTAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cad74A	FBgn0036715	FBtr0075240,FBtr0075239	3	2	2	95	3L	17363251	17363332	GAATGTCACAGAGAATGCTG		58	17363175	17363194	TAAGTAATGGTTCCGGATGG		59	NA	
Drosophila melanogaster	50	rogdi	FBgn0036697	FBtr0075283,FBtr0075282	3	2	2	86	3L	17045161	17045179	AGTTCATACTCACCGTGTC		59	17045228	17045833	TAAAGCTAATGTCAGCCTGG		59	NA	
Drosophila melanogaster	50	CG4933	FBgn0036615	FBtr0075381	1	1	1	95	3L	16345929	16345947	GATCTTTGCTATTCGCTGC		59	16346004	16346079	TATAAGGACCTCATTTGAGCC		59	NA	
Drosophila melanogaster	50	MED10	FBgn0036581	FBtr0075458	2	1	1	60	3L	16225539	16225558	TCTATGTGCCATTTGAAGTG		58	16225580	16225599	TACAGCTGAGGATTCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS31	FBgn0036557	FBtr0075519	2	1	1	140	3L	15998824	15998842	CAGAGTCTGAGCTATTGGC		59	15998945	15999030	TGCCCACGATAATATCACTC		59	NA	
Drosophila melanogaster	50	shd	FBgn0003388	FBtr0075675,FBtr0075676	2	2	2	91	3L	14613773	14613793	TGAATATTCTGGAGCTCAAGG		59	14613845	14613921	GTTGGCTAACGTTTCTATGC		59	NA	
Drosophila melanogaster	50	CG3868	FBgn0036422	FBtr0075729	1	1	1	110	3L	14394395	14394413	TAATGCTGATCTGGTTCCC		59	14394007	14394025	ATCTTGGGATCAAACTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14109	FBgn0036364	FBtr0075850	1	1	1	73	3L	13435226	13435244	AAGAGAATCCATCGACCTC		58	13435280	13435299	CGTGAACATGTTAAGCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10222	FBgn0036356	FBtr0075861	1	1	1	60	3L	13404941	13404962	CAAGTTACACTTTAACGTGGAC		59	13404902	13404920	GTCCAGCAGATACTTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14113	FBgn0040814	FBtr0075837	2	1	1	92	3L	13322331	13322401	AAGAGGTATACACGGAGGA		58	13322457	13322475	ATCTGAGTGCATACTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18179	FBgn0036023	FBtr0076388	2	1	1	68	3L	9632671	9632689	CACTATGGATCCAACTGGG		59	9632721	9632739	GCTGATAAAGTTGTCACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3306	FBgn0036016	FBtr0076380	1	1	1	60	3L	9594953	9594974	TAACTTCAATGATAGTCTGCCC		59	9594992	9595013	GAAACTCATCGTGTAATGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	path	FBgn0036007	FBtr0076428,FBtr0076427	3	2	2	111	3L	9490135	9490223	CCAACAACCGATAATGAAACTC		59	9490045	9490065	AGAAGATTCCCATGATGAGAC		59	NA	
Drosophila melanogaster	50	CG6638	FBgn0035911	FBtr0076651	1	1	1	240	3L	8568815	8568889	TAATTTCAAGGACATGCGC		58	8568491	8568509	CTTGGGAAGGTACTTCTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13676	FBgn0035844	FBtr0076732	1	1	1	80	3L	8138574	8138592	ACGAGATCCACTTCAAGTG		59	8138227	8138531	AATGGTGATAGATCTGGCAC		59	NA	
Drosophila melanogaster	50	eco	FBgn0035766	FBtr0100278,FBtr0076882	1	2	2	60	3L	7330330	7330350	TTCTCCGATCTTAGTGATGTC		59	7330290	7330308	GTATGATAGGCTCCACCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	melt	FBgn0023001	FBtr0100141,FBtr0076917	3	2	2	90	3L	7135158	7135240	TTTCCTCAGGTTAAGGACC		58	7135294	7135312	ACTTGTCTGTCTTGGAGAC		58	NA	
Drosophila melanogaster	50	Prat2	FBgn0041194	FBtr0076946,FBtr0076945	2	2	2	60	3L	6905424	6905442	CAATATCCCTGCTACATGG		57	6905382	6905401	ATTTGTTGGCTATTAGCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11357	FBgn0035558	FBtr0073310,FBtr0113143,FBtr0113142	1	3	3	147	3L	4551933	4552115	CATATCGTTCCAAATGGCG		59	4552224	4552244	TCTACCCAGAAGTATTTGGAC		58	NA	
Drosophila melanogaster	50	CG7447	FBgn0035539	FBtr0073291,FBtr0073292	1	2	2	101	3L	4402064	4402082	ACGTCATCGATCACAAGAC		59	4402146	4402233	AGCAAATAGGTTTCATGCAC		59	NA	
Drosophila melanogaster	50	CG32297	FBgn0052297	FBtr0072939	2	1	1	189	3L	2653477	2653495	CAATTCCTCCTCAGACGAC		59	2653646	2653726	TACATATTTCTGCGAGGACTC		59	NA	
Drosophila melanogaster	50	CG13907	FBgn0035173	FBtr0072593	3	1	1	60	3L	879207	879225	CCATGTTGGATGTTAGCCT		59	879165	879185	ATATTCGAGACTCCGATAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pk61C	FBgn0020386	FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466	2	8	8	87	3L	142804	142822	ATATCGCGACTGCTTAGTG		59	142873	142954	GGTCGAAAGAGTTCTTTGC		59	NA	
Drosophila melanogaster	50	Cyp6a15Psi	FBgn0033303	FBtr0088689	2	1	1	258	2R	4457267	4457399	TTGTCTGCTCATCGTTGAG		59	4457621	4457639	GTTAGGTCTGAATCACCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33418	FBgn0053418	FBtr0086410	1	1	1	62	2R	15629737	15629755	AATACATCGGTTCTCGTCC		59	15629693	15629711	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3492	FBgn0035007	FBtr0072294	3	1	1	69	2R	20361047	20361065	GAACTTGATGGACCAATGC		59	20361098	20361116	GATGTCCAGGTAGATCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nvy	FBgn0005636	FBtr0072267	3	1	1	210	2R	20177065	20177083	TTCTTCATGGAGATGAGCC		59	20177314	20177461	AAACCTGATGGTGACTATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gr59e	FBgn0041233	FBtr0072115	1	1	1	264	2R	19428883	19428968	AGAAATGTAACCTTTGCCAG		58	19428578	19428597	CAAACGTAAACCCAATTGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	yellow-d2	FBgn0034856	FBtr0072012	2	1	1	60	2R	19268920	19268938	GATGGACTATACGATCCGG		58	19268962	19269034	CATGCTTGTAGTAGACGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3700	FBgn0034796	FBtr0071904	1	1	1	157	2R	18782509	18782590	GAGACGGATGAATCGAAGG		59	18782710	18782729	GTATCATATCCAGGGTGCAC		59	NA	
Drosophila melanogaster	50	CG11298	FBgn0034721	FBtr0071819	2	1	1	87	2R	18236104	18236122	CAAAGTTGGCTAGACTCCC		59	18236173	18236191	TCAGACGTTTCGAGATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6758	FBgn0034704	FBtr0071767	1	1	1	80	2R	18064198	18064218	ATTTAGCTCTAAGGTGTCGTG		59	18064260	18064335	CCATTCGAAAGGGATCCTC		59	NA	
Drosophila melanogaster	50	CG30403	FBgn0050403	FBtr0114523	1	1	1	64	2R	17598169	17598638	GTTCTTGGACACGAATGAG		58	17598123	17598141	TAAGTCGAATCTGTAGGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11192	FBgn0034507	FBtr0086296	3	1	1	65	2R	16241851	16241869	ATATGGCATCGTTTCCTGG		59	16241804	16241822	ACATTGGTGTACACTCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15905	FBgn0034462	FBtr0086491	3	1	1	69	2R	15534908	15534926	GTTAGCATCAAGGATGTGG		58	15534769	15534876	CATCGTTATACGTCTCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15080	FBgn0034391	FBtr0086613	2	1	1	140	2R	14680628	14680646	TAACTTCGAGAGTGAACCG		59	14680750	14680820	TTCTCTGGCTTCAGATTGG		59	NA	
Drosophila melanogaster	50	CG18609	FBgn0034382	FBtr0086643	3	1	1	105	2R	14630886	14630907	GGCAAGATCTTTATGAGAAACC		59	14630740	14630822	AAACCATTCCGAAGTAGAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	nopo	FBgn0034314	FBtr0086750	3	1	1	203	2R	14068894	14068912	CTGATCCACATGTCCTAGC		59	14069139	14069212	AAGCTTGTAGCTTCTCCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG30456	FBgn0050456	FBtr0086980	1	1	1	112	2R	12993701	12993782	ACTTTACTAGTATCCGCCTG		58	12993857	12993875	ATTAATGAACTGCGTGAGC		58	NA	
Drosophila melanogaster	50	Sod2	FBgn0010213	FBtr0087078	3	1	1	124	2R	12661005	12661023	CAACAATCTAAATGCCGCC		59	12660899	12660917	AGATGGTGTGGTTGATGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Picot	FBgn0024315	FBtr0087115,FBtr0087114	3	2	2	84	2R	12544687	12544777	ATTCCTATTGATGACTCTCAGG		59	12544624	12544642	AGCCATAGAAGAAGGACGA		59	NA	
Drosophila melanogaster	50	Lis-1	FBgn0015754	FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240	1	6	6	63	2R	12070571	12070592	GCTCAAATGATCAGACAATACG		59	12070615	12070701	CGTAATTCAACCTTGCAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8079	FBgn0034002	FBtr0087367,FBtr0087368	1	2	2	84	2R	11109856	11109874	CTAGCAACGAGGATAGCAG		59	11109921	11110011	TTAGCAATGTCTTGAAAGCG		59	NA	
Drosophila melanogaster	50	SMC2	FBgn0027783	FBtr0087461	1	1	1	81	2R	10739569	10739587	AAACAATCCCAACTTCCTG		57	10739444	10739524	TACCATTGACAGAACCTCC		58	NA	
Drosophila melanogaster	50	CG12863	FBgn0033948	FBtr0087500	2	1	1	212	2R	10508295	10508364	AGCAAGGTTATATGCATGG		57	10508046	10508064	TACAATCACCAGTCGATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33469	FBgn0053469	FBtr0087504	1	1	1	60	2R	10493401	10493422	GGATTTCATAAAGTCGTCAGAG		58	10493362	10493380	GATTTCTGCTTGTGAACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	L	FBgn0001332	FBtr0087492	2	1	1	121	2R	10383835	10383919	TGAAGCTGAAGATGCTCTG		59	10384004	10384022	TGTTTGCTATCTCGATGGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	phyl	FBgn0013725	FBtr0087516	2	1	1	280	2R	10316247	10319428	GAAATTCAAGTTTCAGCCC		57	10315985	10316003	TCGAATAGACTATGGGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pea	FBgn0086895	FBtr0087518	2	1	1	60	2R	10043794	10043813	TTATAATGTCCGTCGCTCTG		59	10043834	10043854	CTGAGCATCGAAACAATAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13331	FBgn0033850	FBtr0087672	2	1	2	277	2R	9409608	9409821	AGAAGACCAGACTGAGAGG		59	9410061	9410080	GTGTTCCATGTTATAGGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8632	FBgn0033762	FBtr0087845,FBtr0087844	1	2	2	125	2R	8542589	8542659	GGTTCGGTATAAGGCTGAG		59	8542808	8542826	CTCTCCAGATCCTCAACCT		59	NA	
Drosophila melanogaster	50	Cpr49Af	FBgn0033729	FBtr0087921	3	1	1	60	2R	8293715	8293733	GATGGAGTCTTGAAGTCCG		59	8293757	8293775	AGTACTTTCCATTGACCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33145	FBgn0053145	FBtr0088047	3	1	2	104	2R	7869406	7869424	AACCTGACGCTTAAGTCTG		59	7869253	7869339	CGTGGTAATGAAGGTATCGT		59	NA	
Drosophila melanogaster	50	CG30034	FBgn0050034	FBtr0088097	3	1	1	196	2R	7405813	7405831	GCTGAAAGCTCAATAAGGA		57	7404231	7404249	GTAATGATCTTGGTCAGGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Tsp47F	FBgn0033629	FBtr0088151,FBtr0088152	1	2	2	110	2R	7265620	7265638	GGGCCTGATCATATTCCTG		59	7265469	7265487	TCCACAATGAAGATGACGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	TpnC47D	FBgn0010423	FBtr0088184	2	1	1	238	2R	7162556	7162730	ACATTGACGAAGACCTGAC		59	7162278	7162296	CTCTACGATGAACTTGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7712	FBgn0033570	FBtr0088238	3	1	1	149	2R	6785087	6785182	GATTCCCTACATCGTCATGG		59	6784903	6784921	TCCTTAAGCTCCATTTGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7861	FBgn0033055	FBtr0085974,FBtr0085973	3	2	2	61	2R	1931049	1931067	CCTTAACCAACCTGAACCT		59	1931141	1931159	AGTGATTTGGGATGACGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)NC136	FBgn0033029	FBtr0086062	2	1	1	82	2R	1548366	1548384	AATGTTCAAGGCCAATCTG		58	1548243	1548321	TCCAGGAGTGATGTATTGTG		59	NA	
Drosophila melanogaster	50	Stlk	FBgn0046692	FBtr0111111	1	1	2	171	2R	448287	450361	AAATCAAGGTTCCCTATCCC		59	450494	450513	TTGCTTAAGAAACGAGTGTG		58	NA	
Drosophila melanogaster	50	His4:CG33873	FBgn0053873	FBtr0091877	1	1	1	60	2L	21524501	21524519	GAACGTAATTCGTGATGCC		59	21524459	21524477	GGCTGTAACTGTCTTCCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	La	FBgn0011638	FBtr0081374,FBtr0081373	2	2	2	60	2L	20349264	20349285	GAGAAGATCGTTTATAAGGAGC		58	20349225	20349243	CCTTAAGGTAGTCCACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ref(2)P	FBgn0003231	FBtr0081253,FBtr0100289	3	2	2	115	2L	19544997	19545015	ATACGGTGAGTACATCGAC		58	19545094	19545167	GATGCTTTCATCAGTGTGG		58	NA	
Drosophila melanogaster	50	CG10343	FBgn0032703	FBtr0081098	2	1	1	109	2L	18703828	18703918	ATAGGAATCTACTGCCAGC		58	18703991	18704009	CTTAAGGCATTCGAACAGG		58	NA	
Drosophila melanogaster	50	CG10336	FBgn0032698	FBtr0081095,FBtr0081094	3	2	2	61	2L	18689947	18689965	ATAGTGGAGCCTAAGAAGC		58	18689990	18690008	AGTGTTTCCACAGTGAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12288	FBgn0032620	FBtr0080957	1	1	1	75	2L	16901221	16901298	TTGGCAGCCTAAAGTACTC		59	16901164	16901182	ATGTAGTCTATTTCGCCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(2)35Di	FBgn0001989	FBtr0080772	2	1	2	61	2L	15750555	15750575	CCTACTACTTCAAGTACAACC		57	15750514	15750535	GTAATAGCCAACTTGAATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15278	FBgn0032554	FBtr0080683	3	1	1	179	2L	14875647	14875667	GTTCTCTTGTCGAACTTTGTG		59	14875419	14875506	AAGAATCCACTGACTGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rab14	FBgn0015791	FBtr0080627,FBtr0080628,FBtr0080626	3	3	3	269	2L	14357451	14357535	AAATTCATGGCCAATTGTCC		59	14357819	14357839	GTTGCCAATGAGAAAGATCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	wb	FBgn0004002	FBtr0080620,FBtr0080619	1	2	2	84	2L	14321170	14321188	CTGATAGGAAGAGCAGCTC		59	14321236	14321318	CTCGACAGTTCTGACAGAC		59	NA	
Drosophila melanogaster	50	CG9395	FBgn0032506	FBtr0080475	3	1	1	90	2L	13351988	13352006	TACAAGTATCTGGCACTGG		58	13351826	13351937	GCTGATTAAGTGATCCAATGAG		59	NA	
Drosophila melanogaster	50	CG9395	FBgn0032506	FBtr0080475	1	1	1	84	2L	13351826	13351937	CTCATTGGATCACTTAATCAGC		59	13351763	13351784	CAAACTGAAGATAGTAGAAGGC		58	NA	
Drosophila melanogaster	50	CG6043	FBgn0032497	FBtr0089911,FBtr0089910,FBtr0114471,FBtr0113039,FBtr0113040	2	5	5	142	2L	13276278	13276382	GCAACAACGATATGATGCC		59	13276488	13276506	TTTCAGGTGTTGTCATTGC		58	NA	
Drosophila melanogaster	50	CG5287	FBgn0032477	FBtr0080436	3	1	1	81	2L	13180029	13180049	TAAACTATAACTCCACGACGG		59	13180089	13180170	TACAAGGCACCTATATTCAAGG		59	NA	
Drosophila melanogaster	50	CG17024	FBgn0032437	FBtr0080371	2	1	1	64	2L	12454483	12454585	GTGGTAATCCTATGTGTTCTG		58	12454611	12454629	AATGTCCGGAGAATTTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5421	FBgn0032434	FBtr0080383	2	1	1	74	2L	12446819	12446838	GACATCACTGTCTACTCCTC		58	12446613	12446782	GTCTTGCCACAGGATATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14947	FBgn0032406	FBtr0080297	3	1	1	60	2L	12077550	12077568	CGGATACACTATGGCATGG		59	12077589	12077610	CGAAGTTCTGACTTCTTATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31871	FBgn0051871	FBtr0080104	2	1	1	96	2L	10668329	10668703	AGGATTAGGCTACATGCTC		58	10668763	10668781	GCTATTCAAACTGGTGTGG		58	NA	
Drosophila melanogaster	50	CG31755	FBgn0051755	FBtr0079972	2	1	1	75	2L	9999032	9999116	AAATCAGAGCCCTAATCGG		59	9998975	9998993	CTGAATGTTTCTCACTGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	nAcRalpha-30D	FBgn0032151	FBtr0079913,FBtr0079916,FBtr0079912,FBtr0079914,FBtr0079915	3	5	6	88	2L	9809281	9809299	ATAGACATCACGTGGTTCC		59	9807947	9809230	ACCAAATCCAACTGATTTCC		58	NA	
Drosophila melanogaster	50	CG31609	FBgn0051609	FBtr0079769	1	1	1	228	2L	9097672	9097690	GTAGTAGCAGTTGTCCCTC		59	9097940	9098269	AACAGACGTGATTTGGAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7466	FBgn0031981	FBtr0079541	1	1	1	80	2L	8049148	8049168	GTTCTCGATTCAGAATCAACG		59	8049209	8049290	GGTACATCAACCTCGTAGTC		59	NA	
Drosophila melanogaster	50	Snoo	FBgn0085450	FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718	2	4	5	60	2L	7895543	7895561	GCACATGCATCACTTTAGC		59	7895501	7895519	GGATTGAGTGGGTGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13796	FBgn0031939	FBtr0114496,FBtr0079504,FBtr0079503,FBtr0079505	3	4	4	82	2L	7728553	7728574	CCTTACTCATATTACCATTGGG		58	7728428	7728510	TCATACCAACGTGATCCTC		58	NA	
Drosophila melanogaster	50	Pvf2	FBgn0031888	FBtr0079423	2	1	1	124	2L	7070929	7074254	AATAATCGTACCAGGGAGC		58	7070823	7070841	TAGAACGTGTTCGTTTCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11149	FBgn0031732	FBtr0079168,FBtr0079169	1	2	2	150	2L	5719427	5719525	AATGGTGGTATCACGTTGG		59	5719295	5719313	GTACACGTGAAAGGAGACC		59	NA	
Drosophila melanogaster	50	CG14013	FBgn0031720	FBtr0079121	1	1	1	69	2L	5553325	5553397	AAGATACTATCGACCATCGT		57	5553275	5553293	CTATGTAGCCGGAGATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hoe2	FBgn0031649	FBtr0077394,FBtr0114514	2	2	2	80	2L	4935314	4935333	GCTTTGGATTTCTGACTGTG		59	4935176	4935274	GAAGTATATCCTGGAACACCTG		59	NA	
Drosophila melanogaster	50	CG11927	FBgn0031638	FBtr0077386	2	1	1	60	2L	4848143	4848162	AACTATCCTCCGATGAATCG		59	4848185	4848203	CAAAGCCCATGTTCATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Umbrea	FBgn0031613	FBtr0077444	1	1	1	60	2L	4577825	4577843	GTCGGACAATGGGTATGAG		59	4577783	4577801	CTAGGCATTTCGTGATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15403	FBgn0031504	FBtr0077661	2	1	1	60	2L	3129070	3129088	GGCATTCAAGGAGTATGGA		59	3129112	3129130	AGAAATGACGGAAATGACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	NTPase	FBgn0024947	FBtr0077680,FBtr0077682,FBtr0077683,FBtr0077681	3	4	4	66	2L	2881300	2881382	GCTTTACAAGAAGATAGATGGC		59	2881255	2881273	AGTCAGAACGTTGTATGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9894	FBgn0031453	FBtr0077713	1	1	2	100	2L	2753623	2753641	CAAAGGAATCCGTGAAAGG		58	2756052	2756070	CTCATCGGAATCTCCATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2843	FBgn0031452	FBtr0077712	2	1	1	295	2L	2745204	2745277	TGGCGGAGATCTAAATCTG		58	2745598	2745616	AGGACTTGTCGATCTTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33125	FBgn0053125	FBtr0077742	3	1	1	60	2L	2651100	2651120	TAAACGAGGTTAAGGTATCCC		58	2651060	2651081	CGATTGGATTTAACTTGACGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	p16-ARC	FBgn0031437	FBtr0077694	1	1	1	110	2L	2580567	2580647	AACCAGAATGTGAAGGACC		59	2580720	2580739	TATTAGGTCGTTCTGGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3557	FBgn0031423	FBtr0077790	3	1	1	103	2L	2385444	2385517	GTCGAATGAAGGATCAGCT		59	2385359	2385377	ATGAAGATGGATAAGCCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5561	FBgn0031333	FBtr0077947	2	1	1	62	2L	1353829	1353896	CTGTCTTTGATACTCGCCA		59	1353785	1353803	TATCGTAACAACGGACCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4341	FBgn0028481	FBtr0077949,FBtr0112936	1	2	2	95	2L	956937	957062	TCATTATGCCGAATTCCTC		57	957121	957139	AAAGTATAATCGTTGGGCG		57	NA	
Drosophila melanogaster	50	KH1	FBgn0086130	FBtr0078009	2	1	1	60	2L	812442	812462	CCTCCTAGATGATACGTTCAC		59	812484	812567	GTGGAAGGGAAATCTCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17075	FBgn0031239	FBtr0078142	3	1	1	60	2L	265022	265040	AAGGATCGTTGATCTCAGC		59	264980	264998	GTGTACTGCAGATAAGTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17159	FBgn0039945	FBtr0113720,FBtr0113717,FBtr0113718,FBtr0113721,FBtr0113719	1	5	5	60	XHet	67548	67566	TACTCACTTAAATCGCCCA		58	66298	66316	TTATAGACGTTTGATGCGG		57	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	CG17450	FBgn0040028	FBtr0070056,FBtr0070057	1	2	2	252	X	21477876	21477894	CATCGAGAAGTTCGATCCC		59	21477479	21477497	CTGTTGGACCTTCTGAAGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG1631	FBgn0031101	FBtr0077297	2	1	1	60	X	20198682	20198702	GTTTCGGATATTTCCACTAGC		58	20198723	20198742	CGCTATCGCTAGTATAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089658,FBtr0089660,FBtr0089662	1	3	7	102	X	17824693	17824711	ATTACTTCTATCACCGCGA		58	17824461	17824627	AAATGTTGACCTAGTGCAC		57	NA	
Drosophila melanogaster	50	CG4872	FBgn0030799	FBtr0074339	1	1	1	96	X	16776518	16776536	AAGGAGCTAGAAATCAGCA		58	16776687	16776705	TTGCGCTAGAGATAATGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3588	FBgn0025643	FBtr0070548,FBtr0100550,FBtr0070549,FBtr0070547	1	4	4	293	X	2816306	2816324	TTGAGTCCCTTGGAAAGAC		59	2816666	2816684	ATTGGAGCTGATGGAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32795	FBgn0040384	FBtr0070492,FBtr0070491,FBtr0070493	3	3	3	94	X	2678515	2678593	TATTCAACTACAGGGCCCT		59	2678439	2678457	GTTCACCTTGAGGATGGAC		59	NA	
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	1	13	13	80	X	2567070	2567088	ATGGAGGGTAATCACACCT		59	2567131	2567221	CTGTATTGAGAGCTCATGCT		59	NA	
Drosophila melanogaster	50	Cyp4d1	FBgn0005670	FBtr0070428,FBtr0070427	3	2	2	183	X	2053812	2053830	GAAGAAGTGCTTTGAGGAG		58	2053587	2053665	GAGCTTTCCATTGATCTCG		58	NA	
Drosophila melanogaster	50	mRpL16	FBgn0023519	FBtr0070314	2	1	1	246	X	1784568	1784656	AATACCAGAATGTGGAGCAG		59	1784865	1784883	GTGTTGACGTTCATCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32806	FBgn0052806	FBtr0070301	1	1	2	60	X	1684082	1684100	AATGTAGTGCACCGAAGTC		59	1684124	1684142	GTCGTTGAACTGACATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41579	FBgn0085705	FBtr0114154	2	1	1	90	U	6943939	6943957	TTTACTCCAAAGGACGTCG		59	6944008	6944029	CTTCTACCTCATTTATCCACTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syt7	FBgn0039900	FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475	2	5	6	155	4	323148	325656	TAGTTATAGTCTTCGGGCTG		58	323012	323033	CCAATCAAAGGAGTTCTAAGAC		58	NA	
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	2	14	14	109	3R	27690344	27690863	AAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	PH4alphaNE3	FBgn0051017	FBtr0085667	2	1	1	99	3R	26430475	26430552	CAATGTTCGGTTCAACTCC		59	26430615	26430633	TATCCACTGTAATGCCTGC		59	NA	
Drosophila melanogaster	50	CG31427	FBgn0051427	FBtr0113407,FBtr0113406	2	2	2	60	3R	25065159	25065177	TATGTTCACCGGACTTAGC		59	25065061	25065136	GGGAAGGAAATCATCTTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31065	FBgn0051065	FBtr0113383	2	1	1	125	3R	22990059	22990077	GAGTGTTCAGGACCTAAGC		59	22990166	22990239	AGTAGCACAGTACACTCCA		59	NA	
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100337,FBtr0100340,FBtr0100339,FBtr0085093	1	4	9	70	3R	22699811	22699829	ATGAATCCTTACTCGGCAG		59	22699705	22699723	TTGTAGCCCGTATATGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10560	FBgn0039325	FBtr0084852	1	1	1	83	3R	21144643	21144664	GAACTACTCTAAGAAACTGCCA		59	21144518	21144599	ATAGAGCAAATGAAGGCCC		59	NA	
Drosophila melanogaster	50	CG5315	FBgn0038984	FBtr0084283,FBtr0084284,FBtr0084282	3	3	3	129	3R	18370410	18370491	TAATTCTGATGGGCCTCCT		59	18370242	18370260	GCAATGACCAGTATGTGGA		59	NA	
Drosophila melanogaster	50	Stat92E	FBgn0016917	FBtr0089486,FBtr0089485,FBtr0089487	1	3	5	80	3R	16367271	16367415	GAAGACAGGATAATGTCCG		57	16367209	16367228	ATCTTCGTTGAACTTTAGGG		57	NA	
Drosophila melanogaster	50	CG4433	FBgn0038763	FBtr0083843,FBtr0083842	1	2	2	85	3R	15845001	15845019	ACTCGATCAATGTGGTCAG		59	15844873	15844952	ATTCAGTATGCACCAATGC		58	NA	
Drosophila melanogaster	50	tws	FBgn0004889	FBtr0082186,FBtr0082187	1	2	8	86	3R	5955360	5960550	AAGCCAGCAAGTAATGGAG		59	5955292	5955310	TATGATGTCTGCATCCGTG		59	NA	
Drosophila melanogaster	50	CG7408	FBgn0036765	FBtr0075142	1	1	1	129	3L	17873604	17873691	TAAATACGGGAATGCAGCA		59	17873784	17873802	AAATGCCACTTTCCAAGGA		59	NA	
Drosophila melanogaster	50	Taf4	FBgn0010280	FBtr0075449,FBtr0075448	1	2	5	93	3L	16109259	16109277	CCAGCAATAACAGCAACAC		59	16109334	16110655	TTGGTCATAGAAGCTGCAG		59	NA	
Drosophila melanogaster	50	NijA	FBgn0036101	FBtr0089569,FBtr0089570,FBtr0089571	2	3	3	149	3L	10687816	10688132	ATATTCCAGATTGCTGTGGG		59	10687686	10687707	GGCTGATATTAGAACATTGACC		58	NA	
Drosophila melanogaster	50	CdsA	FBgn0010350	FBtr0076688	1	1	1	80	3L	8122301	8122563	CCGGATAGATGGAAGAACTG		59	8122605	8122624	ACCATAGATGATCAATGCGA		58	NA	
Drosophila melanogaster	50	CG34030	FBgn0054030	FBtr0100085	2	1	1	95	3L	7067833	7067942	CATTGTAGCTTACTGTCATGC		59	7067758	7067778	GGAATAAACGATCCAATCAGC		59	NA	
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713	1	5	8	94	3L	5692112	5697030	GTTCCTTCGCAAGATTTCG		59	5697088	5697106	TATATGGTGACGCCATGAC		59	NA	
Drosophila melanogaster	50	CG4065	FBgn0034982	FBtr0100398,FBtr0072280	1	2	2	97	2R	20024113	20024134	CCAGTTATCAGTTTCTAGAGGA		58	20023979	20024055	GATAAAGAAGTTCAGCGCC		58	NA	
Drosophila melanogaster	50	CG34040	FBgn0054040	FBtr0100095	3	1	1	60	2R	17720218	17720236	ACTACACAATCCACCACAG		59	17720176	17720194	GTTTATCGGTTGTGGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Acox57D-d	FBgn0034629	FBtr0071607	2	1	1	116	2R	17277626	17277644	GAGGAGGTCTACAATTCCA		57	17277724	17277803	ATTGAATAGTCCTCCAGGC		58	NA	
Drosophila melanogaster	50	Pu	FBgn0003162	FBtr0071578,FBtr0071580,FBtr0071579	2	3	3	82	2R	17069022	17069040	CTTCTACGGCAAAGTTTCC		58	17069086	17069163	ATATTTCGACAATGCGTGC		59	NA	
Drosophila melanogaster	50	CG8920	FBgn0027529	FBtr0086280,FBtr0086279	3	2	3	132	2R	16207405	16207423	ATCGTCGCAGATTACATGG		59	16207518	16209192	TGATGAACACCTGATTACCG		59	NA	
Drosophila melanogaster	50	Or56a	FBgn0034473	FBtr0086344	1	1	1	84	2R	15657948	15657966	CACCTTTATCACTTGCCTC		58	15657818	15657900	TCGGGTAATATCCATCTCC		57	NA	
Drosophila melanogaster	50	Dp1	FBgn0027835	FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682	1	6	6	83	2R	14304949	14304967	CATCTCCTCGATCATGGAG		59	14305013	14305092	CGAATAGTGACCTTATCGCT		59	NA	
Drosophila melanogaster	50	Arf51F	FBgn0013750	FBtr0087377,FBtr0087375,FBtr0087379,FBtr0087376,FBtr0087378	1	5	5	90	2R	11211571	11211592	GAGCTGCATAGGATAATTAACG		59	11211643	11211715	GTTTCATTGCATCAGGCAG		59	NA	
Drosophila melanogaster	50	beta4GalNAcTA	FBgn0027538	FBtr0087539	1	1	1	81	2R	10147579	10147599	CAATCTTTACAACTGTCCACG		59	10147642	10147717	TGATCGATAAGGCAACCTG		59	NA	
Drosophila melanogaster	50	cg	FBgn0000289	FBtr0087526,FBtr0087528,FBtr0087529	2	3	7	108	2R	10064189	10065378	CAAGAACTGTGACATACTTCC		58	10065448	10065466	CTCCAACTTTAGGTTGGGT		59	NA	
Drosophila melanogaster	50	bic	FBgn0000181	FBtr0087783,FBtr0087782	2	2	2	142	2R	8757979	8757997	GAAGAAGATCGTCCACTCC		59	8758102	8758121	GATTGTTGAAGTGGATGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8776	FBgn0033764	FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869	3	5	5	98	2R	8548250	8548271	CATAAGGTCAACTTCTATAGCC		58	8548117	8548192	TACCAGAAAGCTGAAGAAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	2	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421092	TAGTAAGGTAGCAAAGTAGGG		58	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	2	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421092	TAGTAAGGTAGCAAAGTAGGG		58	NA	
Drosophila melanogaster	50	Hr46	FBgn0000448	FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367	3	4	4	111	2R	6095623	6095704	CAATTTCCGCGATATTTCCA		58	6095531	6095550	CGAATCTATCGAGAACAGCT		59	NA	
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995	1	9	9	157	2R	3355133	3355208	AGAAGTTGTCATCAGCTCG		59	3354994	3355012	GTAGTAGTTGGTCAGCACC		59	NA	Nonspecific
Drosophila melanogaster	50	Nipped-A	FBgn0053554	FBtr0091528	3	1	2	81	2R	1082459	1082480	GGGATCGATTTAGTAGAAACTC		58	1075848	1082417	ATAGCATAACGCACTTTCC		57	NA	
Drosophila melanogaster	50	CG31687	FBgn0051687	FBtr0081361	1	1	1	77	2L	20451373	20451391	ATTTCCTACTTTCAACGCG		58	20451432	20451450	AAGTGGAGTCTATGATGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lar	FBgn0000464	FBtr0081260,FBtr0112800	3	2	2	81	2L	19729578	19729598	CGCTATCAGTATTATGTCGTG		58	19729639	19729729	CATCCGTGACCTTAAATTCAC		59	NA	
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017	2	6	12	102	2L	17651480	17652675	CTCTGATACTACTCGTCTTGG		59	17651398	17651416	TTGATGATATTCTCGCGCA		59	NA	
Drosophila melanogaster	50	rk	FBgn0003255	FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610	1	4	5	131	2L	13991706	13992947	GTGGTCGTCCTAGATTTGG		59	13991010	13991029	ATAGAATGCATTGGGATCCA		58	NA	
Drosophila melanogaster	50	A16	FBgn0028965	FBtr0080427	2	1	1	106	2L	13019810	13019828	AATGAATCGAGAACGACGT		59	13019654	13019674	CCTAATACCTAAGTAACCGCT		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Gyc32E	FBgn0010197	FBtr0112856	3	1	2	92	2L	11142405	11142783	CATATTCGCGACATTTGCT		58	11142331	11142351	CGATATGTTGTCAAAGACACG		59	NA	
Drosophila melanogaster	50	Sur	FBgn0028675	FBtr0079963	3	1	1	80	2L	10188951	10189035	ATCAAGTGTCTGTGTCATATCC		59	10188892	10188912	CATAGATACTGGAACGTTTGC		59	NA	
Drosophila melanogaster	50	CG16712	FBgn0031561	FBtr0077546	2	1	1	73	2L	3696382	3696400	AGTTATCATCCCGAAACCA		58	3696327	3696345	CCAAATCGGTTCTCATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr22e	FBgn0045497	FBtr0077888	1	1	1	60	2L	1784330	1784348	GCATTCACGACATTCAGAG		58	1784372	1784390	TTCCAGAAACTTCTCAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	1	7	8	80	2L	119224	119297	TATAATGCAGACTGATGTCCTG		59	119165	119184	TTTCCCAACTTCAAGTTTGC		59	NA	
Drosophila melanogaster	50	CG31973	FBgn0051973	FBtr0113416,FBtr0078163,FBtr0078164	3	3	4	93	2L	38598	38618	CGATGGTATTATTCACCAAGC		59	35203	38543	CGACTCAACTCTATAGGCG		59	NA	
Drosophila melanogaster	50	CG12679	FBgn0031103	FBtr0077332	3	1	1	61	X	20247162	20247180	CTACCTGGTATCCGATCAG		58	20247119	20247137	ACAGTGGAATCAACGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1597	FBgn0030289	FBtr0073458	1	1	1	60	X	11241105	11241125	ATAAATCCTATCTCAGCACGG		59	11241065	11241084	GAGAAGAGCGTATCCTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lz	FBgn0002576	FBtr0112814,FBtr0071320	1	2	2	220	X	9180746	9180765	GTTCACCAGGATCTATTGTG		57	9182497	9182515	CAATTCTCATCGTTTCCCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3071	FBgn0023527	FBtr0070398	1	1	1	132	X	2157021	2157108	GAAACCAGAACTACTCAAGG		57	2157203	2157221	CTTTACCACAAGCATGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41318	FBgn0085611	FBtr0114055	1	1	1	121	U	214329	214347	AAACTACGTGGAGTCAGAC		58	214432	235400	CATTACTGCAGACGTTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fer2LCH	FBgn0015221	FBtr0085622,FBtr0085624,FBtr0085623	3	3	3	89	3R	26215457	26215475	CATATTGAGCCCGAGATCC		59	26215528	26215546	GTAGGAGTTGAAGTGGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2310	FBgn0039665	FBtr0085434,FBtr0085433	3	2	2	171	3R	25317790	25317808	ACAATAATGGCCGTCTACC		59	25317637	25317655	AGTCCATGAAGTCGAAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpb10	FBgn0039218	FBtr0084688	1	1	1	88	3R	20543350	20543368	CAATCCGTTGTTTCACCTG		59	20543420	20543521	ATCTCCTTCGGTGTATTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5217	FBgn0038694	FBtr0083741	1	1	1	60	3R	15073534	15073555	CACTATAAGTCGCTTCTTTACC		58	15073384	15073513	CGAAGGATCTTGAACATCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7217	FBgn0038570	FBtr0100619	1	1	2	105	3R	13991872	13992085	ATGGTGAAAGTAGGAGACTC		58	13991786	13991804	AGATGATCACCTTCTTGCC		59	NA	Nonspecific
Drosophila melanogaster	50	CG9297	FBgn0038181	FBtr0082828,FBtr0082827	3	2	2	80	3R	9601110	9601129	AAGATCTTGATGGAGATGGC		59	9601170	9601260	CTTCATCCTGAGAATTGTTGG		58	NA	
Drosophila melanogaster	50	Paip2	FBgn0038100	FBtr0082693	3	1	1	113	3R	8809502	8809522	TAATTTACGTAGTGGACGACG		59	8809597	8809678	GTTGCAGTTCGTTCTTGTC		59	NA	
Drosophila melanogaster	50	Ccp84Ad	FBgn0004780	FBtr0081690	2	1	1	272	3R	2518877	2518895	CTACAAGAGAACCGTCCAG		59	2519131	2519149	TAGGAGGTGTAGGTAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7611	FBgn0037094	FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362	3	8	8	110	3L	21518808	21519093	GACCTTAAGGACCTAGAGC		58	21519167	21519185	ATTGCCATCATCCAAATGC		59	NA	
Drosophila melanogaster	50	CG5282	FBgn0036986	FBtr0078233	1	1	1	219	3L	20418159	20418229	ACAGACCATGCTCTTTGAG		59	20417905	20417923	CAGGTTGAGCAAGATTACG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hdm	FBgn0036955	FBtr0074826,FBtr0074825	3	2	2	97	3L	20221968	20221986	AATAAGGTTGTGCTCTGCT		59	20222046	20222182	AACATTTCTCCTCTACTCGC		59	NA	
Drosophila melanogaster	50	Tsp74F	FBgn0036769	FBtr0075154,FBtr0075155	1	2	2	80	3L	17886317	17886412	CTTTGTGATATTCGTGGGT		57	17886255	17886273	AACTCATTGACGAAACTCC		57	NA	
Drosophila melanogaster	50	comm2	FBgn0041160	FBtr0075580	1	1	1	60	3L	15691548	15692307	GCAATTATCGCAACAATGC		58	15691506	15691527	AACGCCTCTATATCTACAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL10Ab	FBgn0036213	FBtr0076032	2	1	3	64	3L	11816404	11816422	GCCTGAAGAACTACGATCC		59	11816450	11816770	AATGTGCTTCAACTTGACG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Doc2	FBgn0035956	FBtr0076547,FBtr0100367	3	2	2	255	3L	9008042	9008060	GATGCGACTAAGTGTTTCC		58	9007727	9007823	AATATGGCCGCTGTTATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15212	FBgn0040842	FBtr0077163	3	1	1	91	3L	5124707	5124863	AAGTACCTAGCTCTGACCA		59	5124918	5124936	ATATTATCGCCGATCAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubi-p63E	FBgn0003943	FBtr0073179,FBtr0073177,FBtr0073178	1	3	3	89	3L	3901649	3901667	AGACAAGGAAGGAATTCCC		58	3901578	3901596	ATGTTGTAATCGGACAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9018	FBgn0035318	FBtr0072910,FBtr0072909	2	2	2	126	3L	2235961	2236056	CATACAGGTGAACGAAGCT		59	2235853	2235871	GAGAAGTTCCTTCTGCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9194	FBgn0035192	FBtr0072651	1	1	1	85	3L	1236708	1236726	TCTCGTGGTTTCCTATTGC		59	1236775	1236852	GTATGTCTCGCTTCACCTC		59	NA	
Drosophila melanogaster	50	18w	FBgn0004364	FBtr0086309	3	1	1	60	2R	16002854	16002873	GTACTTGAAATCGGTACCCT		59	16002894	16002914	CTTCTCCCAGAAGTATCTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sm	FBgn0003435	FBtr0086492,FBtr0100233,FBtr0100232	3	3	7	106	2R	15488466	15488484	AGTCAAATGACGACCTACG		59	15461823	15488397	CAAGACATCAACTGTGATGG		58	NA	
Drosophila melanogaster	50	Hsf	FBgn0001222	FBtr0110964,FBtr0086782,FBtr0110966,FBtr0110965	1	4	4	234	2R	14020427	14020509	TATGGATTCCACAAGATCACC		59	14020213	14020231	AATCCAGATTGTCCTGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11196	FBgn0033248	FBtr0088870	2	1	1	129	2R	3882127	3882146	AAGTTAGTTCCAAGATGGCC		59	3881847	3882035	TAGTTACGTCGCTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cdc23	FBgn0032863	FBtr0081362	3	1	1	60	2L	20461030	20461048	AAATGCCTAGACTCAGAGG		58	20461132	20461150	AGTCAATCGTCTTCAGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG16885	FBgn0032538	FBtr0080559	1	1	2	184	2L	13933467	13933485	CACCTATCCCGTTAAGGTG		59	13932840	13932858	TTTGTAAGTCGTACGTTGG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15482	FBgn0032483	FBtr0080487	2	1	1	60	2L	13211296	13211314	AAGAGATGTCAACACCCTG		59	13211254	13211272	CAGAGGATTAAGGCCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16974	FBgn0032479	FBtr0080489	3	1	1	83	2L	13187087	13187107	TATTTCGAGAATCGACAGTGG		59	13186956	13187043	ATGTACAGTCGTAATCCTGC		59	NA	
Drosophila melanogaster	50	CG18591	FBgn0031962	FBtr0079560	2	1	1	60	2L	7885224	7885245	GTTATACGAGAACATATCGCTG		58	7885185	7885203	CATGTACTCATCGAATCCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	stai	FBgn0051641	FBtr0079198,FBtr0079196,FBtr0079197	3	3	3	98	2L	6121936	6122015	GTCGCATTTCTCTAGAAGC		58	6122076	6122095	ACTCATTGGTGATCTCATCC		59	NA	
Drosophila melanogaster	50	CG3246	FBgn0031538	FBtr0077572	2	1	1	101	2L	3461370	3461446	GAAATGAGATTCAACGGTGG		59	3461288	3461307	TACTGTAAAGGGTCCATTGG		59	NA	
Drosophila melanogaster	50	Gs1	FBgn0001142	FBtr0078115,FBtr0078114	3	2	2	65	2L	133222	133240	GGATTAAGGCATGTGACGA		59	133269	133287	CATACTCCTCAGCTATGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4822	FBgn0031220	FBtr0100307,FBtr0100308,FBtr0100310,FBtr0100309,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157	3	8	8	82	2L	118982	119000	GAAAGCGTTTATGCATTGC		58	118862	118938	ATCGTCTAAACCAGTTGTAGG		59	NA	
Drosophila melanogaster	50	M(2)21AB	FBgn0005278	FBtr0089429,FBtr0089431,FBtr0089430,FBtr0089436,FBtr0089435,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437,FBtr0089428	2	10	10	115	2L	113361	113444	GATTGTCAAGGACCTAAACC		58	113522	113540	AGTTGTCAATCTCCAGAGG		58	NA	
Drosophila melanogaster	50	snoRNA:Me18S-C1280	FBgn0086059	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR31579	FBgn0051579	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG14566	FBgn0037127	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30227	FBgn0050227	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR30316	FBgn0050316	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:N5:42Af	FBgn0011936	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi18S-1854c	FBgn0083040	FBtr0113567	1	1	1	60	X	17039326	17039346	CGTTGTGGTATTCAATTGGAC		59	17039286	17039305	ATGCCCTTAAGAGGAATAGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40486	FBgn0069972	FBtr0111188,FBtr0111187	1	2	2	71	X	22361362	22361380	TCATTAACAGCCTAACGGG		59	22361309	22361327	GATACATGTTGAGCACCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15445	FBgn0031161	FBtr0077252,FBtr0077251,FBtr0077253,FBtr0077250	1	4	4	80	X	20989729	20989747	GTACGAAAGGATCAATCGC		58	20989788	20989899	TGATCCTCCATCTCTATTAGGT		59	NA	
Drosophila melanogaster	50	Mgstl	FBgn0025814	FBtr0077243	1	1	2	102	X	20914131	20914149	GTTGAATCCCAGACCAGAC		59	20914215	20914233	GATTGGAGAGGCTTAGCAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089406,FBtr0089407,FBtr0089401,FBtr0089404	2	4	13	137	X	20101657	20103198	ATTCACAGACGACGAAGAG		59	20101538	20101556	TTCTTGATCTCGAGTGGTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Grip84	FBgn0026430	FBtr0074775,FBtr0074777,FBtr0074776	1	3	3	80	X	19457156	19457175	TCTCCAAGTACCAAATGCTC		59	19457033	19457114	TTTCCTTCCAAATCTTGCAC		58	NA	
Drosophila melanogaster	50	CG14190	FBgn0030979	FBtr0074663	2	1	1	60	X	18960832	18960852	CATGTTGTCCCATTACTTTCC		59	18960874	18960892	GGCAAACCATTTCTTGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CCKLR-17D1	FBgn0030950	FBtr0113002	1	1	3	165	X	18607655	18607673	ATACAACCTGTTCCTGGAC		58	18603081	18603099	CTTCTTGCTCTCCAGACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	beta-Spec	FBgn0003471	FBtr0074454	3	1	1	80	X	17562407	17562540	TGGGATAAGGTATACATGGC		58	17562580	17562601	TTCGGGATTACTCTTATAACCC		59	NA	
Drosophila melanogaster	50	X11L	FBgn0026313	FBtr0074451	2	1	1	83	X	17497495	17497737	AACAAAGAGGGTCTCTTGG		59	17497784	17497802	GACAAGTTGAGTGGATCCA		59	NA	
Drosophila melanogaster	50	CG4829	FBgn0030796	FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337	1	5	5	90	X	16718725	16718743	GAAGGGATACCATGTGTCG		59	16718794	16718964	CAAATAGATTTGGTACTGCTCG		59	NA	
Drosophila melanogaster	50	Anxb11	FBgn0030749	FBtr0074303,FBtr0074302	1	2	2	108	X	16312124	16312142	TGATCCGTGTGATCATCAC		59	16311918	16311996	GAAGTATCGCCCTTGATCC		59	NA	
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	1	7	7	80	X	16273085	16273103	TTTGGTTATGCATGAGCAC		58	16273145	16273233	CAGAAGGCACATTTGTTATCC		59	NA	
Drosophila melanogaster	50	Stim	FBgn0045073	FBtr0074161,FBtr0074160,FBtr0074159	3	3	3	81	X	15829503	15829521	AGAATGTTCTGTACGGTCG		59	15829366	15829460	GTAATACGTGCTCTAGAACCC		59	NA	
Drosophila melanogaster	50	shi	FBgn0003392	FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037	1	9	9	110	X	15788792	15788878	AGTTACCGAATATGGCGAG		59	15788952	15788970	TTGTTACTACCGGTCACAC		59	NA	
Drosophila melanogaster	50	cngl	FBgn0029090	FBtr0089294,FBtr0089293	2	2	2	82	X	15293119	15293253	GCCTAATGGTATACGACGA		58	15293055	15293074	TATCAGCGCTATCATATCGA		57	NA	
Drosophila melanogaster	50	dob	FBgn0030607	FBtr0073961	2	1	1	60	X	14961553	14961573	CGACTTCATATTTCCCTTACC		58	14961595	14961613	TGAACTCCGACATTACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1681	FBgn0030484	FBtr0073778	2	1	1	161	X	13302598	13302697	CGATAATGCGGTGAATCTC		58	13302822	13302911	TTGTAGCCAATGGATTTCG		58	NA	
Drosophila melanogaster	50	HDAC4	FBgn0041210	FBtr0100425,FBtr0073797	1	2	3	103	X	13165612	13170475	TCATGGAGCTCAAGAAGAG		58	13165527	13165548	CTCCAATTGAAGTTTATGCTCC		59	NA	
Drosophila melanogaster	50	CG4004	FBgn0030418	FBtr0073686	3	1	2	60	X	12638835	12638853	AAAGGTACAGGAATCGGTC		58	12638876	12638895	ATCCATCAGATGAAACCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0100305,FBtr0100304	3	2	10	171	X	11856313	11856332	CATTAACATGGGATTCACCG		58	11848303	11856053	GATTGAGTTCGAATCGTGC		59	NA	
Drosophila melanogaster	50	CG32667	FBgn0052667	FBtr0073474	1	1	1	82	X	11033905	11033923	ATCTGAGCAAACCCTATCC		58	11033841	11033859	TTCACATTTGCAGTTCGAC		58	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG1826	FBgn0030228	FBtr0071497	1	1	1	82	X	10663946	10663967	GGCAATACTTATACTTCGAAGC		59	10664009	10664096	ATGGAATACCCGGTTTACAG		59	NA	
Drosophila melanogaster	50	spri	FBgn0085443	FBtr0112688,FBtr0112689	2	2	4	86	X	10386360	10390836	TCGTGAAGTCTTATGTCACC		59	10386293	10386311	AATTGAAGGGTGTATGCCC		59	NA	
Drosophila melanogaster	50	CG12643	FBgn0040942	FBtr0071481	1	1	1	94	X	10159006	10159024	GAATCCATTCGATTCCGTC		58	10158930	10158948	AATAGCGATAGGATACCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34408	FBgn0085437	FBtr0071439,FBtr0112675	2	2	4	89	X	10120395	10120556	ACCACCTATGATAATGCCC		58	10120609	10120627	ATTCAGATCCGTCTTCCAC		59	NA	
Drosophila melanogaster	50	Aats-lys	FBgn0027084	FBtr0071367,FBtr0071366	2	2	2	71	X	9501701	9501721	CGCTATCTTGATCTCATTCTC		58	9501589	9501668	GTACGAGATGATCTTGGCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG9034	FBgn0040931	FBtr0071343	2	1	1	112	X	9053729	9053747	CAACTACTATGCCAAGGAC		57	9053635	9053653	TCCTCTAGTCATCCTCGTC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG2256	FBgn0029995	FBtr0071115	2	1	1	91	X	7978310	7978328	TTGTGCTCAAGAAGTTCGA		59	7978182	7978200	CTCGATTAGCAATGGTTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	RpS6	FBgn0004922	FBtr0071136,FBtr0071137,FBtr0071135	1	3	3	101	X	7794174	7794192	GAAGAAGGGTGAGAAGGAC		59	7794091	7794109	CTCAAGTTGTAGAGCTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15325	FBgn0029968	FBtr0071088	1	1	1	93	X	7780159	7780177	TGGAGATTTGGTCGTTTCC		59	7780372	7780390	ATGGATCTAACGATCAGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10920	FBgn0029963	FBtr0071150	2	1	1	60	X	7747802	7747820	TACGATTGGGCTACAACAC		59	7747760	7747779	AGTTGGATAAGAACCTTGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9650	FBgn0029939	FBtr0071044,FBtr0112958,FBtr0071043,FBtr0071045,FBtr0112959,FBtr0112957	3	6	6	64	X	7133121	7133139	AGAACTGCAACATGTTCCA		59	7133167	7133185	ATTGAAGAGCGGTACTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17717	FBgn0029877	FBtr0070944,FBtr0070943	3	2	2	87	X	6484217	6484235	TGATTGTGAAGCATCTGCT		59	6484350	6484369	ATATTATCCATGCACTGCAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	dx	FBgn0000524	FBtr0070914	1	1	1	143	X	6431035	6431121	GTTTACGACATTGCATCGG		59	6431227	6431246	GAATGCAATCTTGAGGAAGC		59	NA	
Drosophila melanogaster	50	CG15768	FBgn0029806	FBtr0070834	2	1	1	68	X	5670684	5670703	ATTAAATTCGCACCAACTGC		59	5670635	5670653	GTATCGTTCGGTTTCTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15465	FBgn0029746	FBtr0070742	3	1	1	60	X	5070001	5070019	ATCACCGCTATTTGTGGAG		59	5070041	5070061	CGGTTGTGATCTTTGATTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070740,FBtr0100408	2	2	4	219	X	4961634	4961652	CTCCACAATGATTACGCTG		58	4962189	4962207	GTTCACAAACTCAAGCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mnt	FBgn0023215	FBtr0070580,FBtr0070579,FBtr0070578	2	3	3	122	X	3593200	3593218	TGAAGGAGTGCTATGACCT		59	3593301	3593387	CTTCATGACTCAAGGAATTGAC		59	NA	
Drosophila melanogaster	50	ng2	FBgn0010294	FBtr0070540	1	1	1	115	X	3134324	3134344	TCACTCACTATAAGCGAAAGG		59	3134229	3134247	TTATTCTTCCGATCTGCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3719	FBgn0024986	FBtr0070233	1	1	1	60	X	1273179	1273198	GTAGTGGACAAGTTCATTGG		58	1273138	1273156	GTTTGTCGATTAGGGTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3638	FBgn0026875	FBtr0070249	2	1	4	196	X	1120309	1127847	GTTTACCTCGAGAGTCTGG		59	1119555	1120149	TACAAGCCTAATCCGATGG		58	NA	
Drosophila melanogaster	50	CG32816	FBgn0052816	FBtr0070101,FBtr0070102	2	2	2	74	X	227605	227624	ATCAGGAAGCTATCCATCAC		58	211914	211932	AATCATTTGGCTCCATCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG41521	FBgn0085666	FBtr0114113	1	1	1	63	U	2919167	2919185	ACAACCAAGGTTCATTTGG		58	2919211	2919230	GAATTGGACATTATAGCCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40188	FBgn0058188	FBtr0113822	3	1	2	130	U	2233310	2233329	CTTAAACTTTCCTCCCAACC		58	2233483	2233501	GCCGTGAAATTAGCAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Asator	FBgn0039908	FBtr0089107	3	1	3	80	4	502326	508434	TCTACGAGTAGAGGAAACG		57	502264	502282	ATCTTGTTTGGAAGAAGGC		57	NA	
Drosophila melanogaster	50	Syt7	FBgn0039900	FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475	1	5	6	154	4	323148	325655	AGTTATAGTCTTCGGGCTG		58	323012	323033	CCAATCAAAGGAGTTCTAAGAC		58	NA	
Drosophila melanogaster	50	dpr7	FBgn0053481	FBtr0113462,FBtr0113463	3	2	3	94	4	270593	270667	GTGATTTGGTATCATGGCT		57	270517	270535	CTCGTTGTTCCTACATCAG		57	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156	2	9	10	80	4	103363	106347	CCTAAGATGGGCTTAACTCG		59	106387	106408	CATATCTGAACTTAGCATTGGG		58	NA	
Drosophila melanogaster	50	CG1792	FBgn0039860	FBtr0085819	3	1	1	60	3R	27442510	27442529	GTTATAGACCTTCTACCCGA		57	27442551	27442570	ATATTTCGTACGGCTCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31524	FBgn0051524	FBtr0110860	1	1	2	84	3R	26339622	26339697	GATAAACCCGTGATTCATGAG		58	26339558	26339576	CTGATGCGTCAAACAAGTC		59	NA	
Drosophila melanogaster	50	CG9682	FBgn0039760	FBtr0085617	2	1	1	89	3R	26077058	26077076	CTTGAAGTACGGAGAAGCA		59	26077188	26077206	TCATCTCCCAATTCGTGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1983	FBgn0039751	FBtr0085574	2	1	1	143	3R	26002802	26002908	GATCAACAAGATCCTTTCTGTG		59	26002680	26002698	GTGTTGATCTGGATGAGCA		59	NA	
Drosophila melanogaster	50	CG31030	FBgn0051030	FBtr0110834,FBtr0085579	2	2	2	60	3R	25991125	25991143	TTAACTTCCTGAATCCCGC		59	25991083	25991101	TGGAAATCACTGAGGAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mgat2	FBgn0039738	FBtr0085602	1	1	2	133	3R	25842589	25843357	TCTATCAGAAGGTGGAGGT		58	25842474	25842492	GTCCCAGTTGTAGTCATCG		59	NA	
Drosophila melanogaster	50	CG7802	FBgn0039704	FBtr0085486,FBtr0085485	3	2	2	80	3R	25648409	25648428	AGCATCTACTACGACAATGC		59	25648471	25648554	CGAGAAGACGTATCCTGTC		59	NA	
Drosophila melanogaster	50	Pcd	FBgn0024841	FBtr0085458	3	1	1	154	3R	25549171	25549189	TCTCAGTTCTGTATTCGCC		59	25549307	25549583	TTCGTTTAGTCGTACCACC		59	NA	
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0110913,FBtr0110912,FBtr0091524,FBtr0091527,FBtr0091526,FBtr0113466,FBtr0091525,FBtr0091523	1	8	9	80	3R	24745224	24745242	CCGTCATTCAAGATGATGC		58	24745283	24745961	TGGCCATGATCTTATATCTGTG		59	NA	
Drosophila melanogaster	50	CG34295	FBgn0085324	FBtr0112491	3	1	1	60	3R	24615792	24615811	GAAATCAATCCAATTGCCCT		58	24615833	24615852	TCATTGATACTCTTGTGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6142	FBgn0039415	FBtr0084987	1	1	1	86	3R	21962197	21962215	GGAACCCAATTTCATGCAG		59	21962319	21962337	GGCTTCGATCTAGAAAGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11857	FBgn0039303	FBtr0084814	2	1	1	61	3R	21085499	21085517	AGTTCAAGTTCTGGCTGTC		59	21085540	21085560	GAAGAACGTACAAATCAGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31120	FBgn0051120	FBtr0089440	3	1	2	81	3R	20740278	20740296	TTGTCTCTGTCCTGAATCC		58	20740154	20740234	GGCTCAATGTAAGTCTTCAC		58	NA	
Drosophila melanogaster	50	CG6643	FBgn0039208	FBtr0084647,FBtr0084648	2	2	2	91	3R	20378367	20378626	TATTGGTGTGAGGCTACTG		58	20378681	20378699	AGGTTCTCGTCTTTCTTGG		59	NA	
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084570,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	2	6	6	80	3R	20025044	20025062	TAAGACTATGTCCGAGCTG		58	20024921	20025000	TTGATCAGCGTAAACTTGG		58	NA	
Drosophila melanogaster	50	p38c	FBgn0046322	FBtr0084582	2	1	1	60	3R	19975211	19975230	TGTAAGCCAAATACGATGTC		57	19975170	19975188	GGTGATAAACTCCCTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pnt	FBgn0003118	FBtr0089717,FBtr0089715,FBtr0089716	3	3	3	157	3R	19117145	19117230	AGAATCTAGTTGGGCACAC		59	19117006	19117024	GTTGGTTGAGTACAATCCG		58	NA	InUTR
Drosophila melanogaster	50	CG31457	FBgn0051457	FBtr0084405	3	1	1	60	3R	18952686	18952704	AGATCAACATGAACGACCC		59	18952644	18952663	AAGGTGTCCTTGCTATAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7045	FBgn0038978	FBtr0084258	2	1	1	60	3R	18317923	18317943	CCTCAAATACTAACCAATGCC		59	18317965	18317983	GTCATCGAGTCATCCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7956	FBgn0038890	FBtr0100124,FBtr0110891,FBtr0084112	3	3	3	93	3R	17350157	17350176	CTGAAATCTCCGTTTATGGT		57	17350229	17350313	GAGTATAGTCTCCCTTTAATGC		57	NA	
Drosophila melanogaster	50	mod(mdg4)	FBgn0002781	FBtr0084062	3	1	22	100	3R	17190360	17190447	AGGACATCATAACCCATGTG		59	17190279	17190297	AAGAGTAGACAGCTTGTGG		58	NA	
Drosophila melanogaster	50	sec15	FBgn0038856	FBtr0084034	3	1	1	150	3R	16932439	16932457	GAACCTCATTATGCTGTCC		57	16932243	16932261	TTCCTTGTCGAGAATTTCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	RhoGAP93B	FBgn0038853	FBtr0084036	3	1	1	80	3R	16910190	16910270	TATCAGAGCATGTACTCCTG		58	16910129	16910148	AACCTACTTCATCCACATCC		59	NA	
Drosophila melanogaster	50	Oamb	FBgn0024944	FBtr0083932,FBtr0083933,FBtr0083934	1	3	3	90	3R	16526375	16526393	ATTGTCAACCTAGCTGTGG		59	16526041	16526324	CGAATATCCAAACCTTGAAGAC		59	NA	
Drosophila melanogaster	50	H	FBgn0001169	FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917	2	4	4	171	3R	16452162	16452180	AGTACCGACCAAATGTCTG		59	16452313	16452499	ACAGATTCAGTGGTAAGTCTG		59	NA	
Drosophila melanogaster	50	CG14285	FBgn0038674	FBtr0083711	1	1	1	67	3R	14851516	14851534	GGTCAACAATCTTTCGCAG		59	14851624	14851642	TGATCAACTCATGGCAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	gukh	FBgn0026239	FBtr0089768,FBtr0100317	2	2	4	84	3R	14844132	14844150	CAAGTCCAATTCTTCGACG		58	14844197	14846661	ACGTTGATACCCTTCTTCAC		59	NA	
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642	1	13	13	131	3R	14261181	14261201	ATGTCAGATACTCAGAGATGC		59	14260763	14260781	TGTTATCTGTGAGACCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	PKD	FBgn0038603	FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592	3	4	4	203	3R	14131625	14132352	AGCAGCTCACTGAATATCC		59	14131440	14131458	CTTGTGCGTATTGTACTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7131	FBgn0038598	FBtr0083598	1	1	2	132	3R	14113419	14113437	TACAAGCTGAGCTACATGC		59	14113248	14113266	AGTTCGGTTGATAGGACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5840	FBgn0038516	FBtr0083454,FBtr0083455	3	2	2	289	3R	13362217	13362236	TATTCGTGATGATTGAGGCC		59	13362560	13362578	CCTATGTGCCTACTTCGTC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Abd-B	FBgn0000015	FBtr0083382,FBtr0083385,FBtr0083384,FBtr0083381,FBtr0083383	1	5	5	82	3R	12755407	12755425	AATGCGTATGTTTCCAAGC		59	12755286	12755362	TGGAACCATATCTTGACCTG		59	NA	
Drosophila melanogaster	50	CG14890	FBgn0038444	FBtr0083300	2	1	1	91	3R	12395998	12396016	TTATTTGCCCGATGTAACG		58	12396071	12396089	TTTCATTATCCTCCGCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	gish	FBgn0011253	FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333	2	6	8	138	3R	12118541	12119712	CTATTAGGATCACATGCCGA		59	12119813	12119831	GGGCGCAAATATTGAAGAG		59	NA	
Drosophila melanogaster	50	CG31291	FBgn0051291	FBtr0083243,FBtr0083244,FBtr0113402	1	3	3	81	3R	11740155	11740174	TGGATAAACTGACCAACGAG		59	11737878	11740113	GCAGATATTTCCTCTTTGTGC		59	NA	
Drosophila melanogaster	50	CG31446	FBgn0051446	FBtr0083163	1	1	1	63	3R	11519480	11519498	ATGTCAGCGATAACTCAGG		59	11519707	11519725	TAATGGTCGAAGGATTGGA		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9312	FBgn0038179	FBtr0082825	3	1	1	82	3R	9591682	9591700	GTGATAAGCACCCAGAGTC		59	9591830	9591848	AAATCGTCACTGGTGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	2	8	8	284	3R	9504400	9504475	AACACGACGTAAATCAGGA		58	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG17639	FBgn0038029	FBtr0114565,FBtr0082576	3	2	2	101	3R	8210530	8210937	TCACGGACTACTATTTCCC		58	8211002	8211020	CCAAGATTGTGTTTAGCCA		57	NA	
Drosophila melanogaster	50	dpr15	FBgn0037993	FBtr0082549	3	1	1	90	3R	7969207	7969225	TAGTCAAACTGGATTCCGG		58	7965843	7969154	GAATATTCACCGTTCAGCAC		59	NA	
Drosophila melanogaster	50	l(3)neo38	FBgn0086910	FBtr0082533,FBtr0110877,FBtr0110876	2	3	3	125	3R	7596969	7596990	AATATCTCCATACCGTACTCAC		58	7595815	7596883	CTGGTTGAGGACTTCTTCC		59	NA	
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082456	1	1	6	158	3R	7418218	7418236	TTTGGTCAGAACACAGAGG		59	7417724	7418096	ATTGCGGAAGACTGATCTC		59	NA	
Drosophila melanogaster	50	wkd	FBgn0037917	FBtr0082414,FBtr0082413	3	2	2	190	3R	7409610	7409628	AAATGTTTCTCGACGAGCA		59	7409782	7409858	GTCCTGCAGGTATACATCG		59	NA	
Drosophila melanogaster	50	Ugt35a	FBgn0026315	FBtr0082374	2	1	1	60	3R	6997298	6997316	CTAATGCAAACCTTTGCCA		58	6997256	6997276	ACTGATCATCCTCGAATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ugt35b	FBgn0026314	FBtr0082375	2	1	1	60	3R	6995331	6995352	AATCTCCTCTATCGTATACTCC		57	6995292	6995311	AAGAAAGTCATTCGATCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ugt86Dg	FBgn0040253	FBtr0082377	1	1	1	60	3R	6990602	6990622	CATTGAGAGCATTCACTATGG		58	6990562	6990581	AAATTGGTCGTAGAAGAAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SelR	FBgn0037847	FBtr0082293	1	1	6	131	3R	6689537	6691230	CGTGAAGAAACGTATACGC		58	6689424	6689442	TTCACGAACTCAATGGAGG		59	NA	
Drosophila melanogaster	50	CG14688	FBgn0037819	FBtr0113215	2	1	1	92	3R	6504122	6504141	GAACTGATGGTCTACGATCG		59	6503774	6503792	GTGGATTAGAATGCAGGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0089782,FBtr0089781,FBtr0114459	3	3	8	82	3R	4660660	4661006	CATATACGGTACCCTACGAC		58	4660597	4660615	GTAGATGCTGTACTTGCTG		57	NA	
Drosophila melanogaster	50	CG31284	FBgn0051284	FBtr0081754,FBtr0081755,FBtr0081753	3	3	3	238	3R	3720343	3723577	CAAATAACCGCTTCAAATCG		58	3723778	3723796	CTTCATCTGGTCGATCAGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1988	FBgn0037464	FBtr0081632	1	1	2	106	3R	2888852	2888870	ATAGAAGCCATCAAACGAG		57	2889017	2889036	CACTGTCTCTTTAATTCGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	TfIIFalpha	FBgn0010282	FBtr0081719	1	1	1	138	3R	2207862	2207880	AGATGAACAGCTTACCCAG		58	2207982	2208058	CCGTAGTCCTCTACTTTGC		59	NA	
Drosophila melanogaster	50	Obp83cd	FBgn0046878	FBtr0078584	2	1	1	150	3R	1934343	1934999	CATCACCAACATGGAAAGC		59	1935113	1935131	ATTGACAGGATAGTAGGCG		58	NA	
Drosophila melanogaster	50	Pi4KIIalpha	FBgn0037339	FBtr0078756,FBtr0078757	3	2	3	187	3R	1388606	1388694	AAGTTGAGATCAACACCGT		59	1388437	1388456	TTTCTGAATAACAGCATCGC		58	NA	
Drosophila melanogaster	50	Snm1	FBgn0037338	FBtr0078688	3	1	1	87	3R	1382370	1382388	TGCTAACAGAAGATCGCAG		59	1382493	1382514	TCAGTAAAGTAATCGACTAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1129	FBgn0037279	FBtr0078871,FBtr0078870	2	2	2	116	3R	640400	640418	AGGTGTTCCCTGAAATGAC		59	641009	641029	AGCTTAGATACAGACACATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	tub	FBgn0003882	FBtr0078918	3	1	1	286	3R	214107	214187	CCTAAATGGCAAAGTCCAC		58	214435	214455	GTTGGAGTTAGTAGTACTCCT		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG9795	FBgn0037234	FBtr0100617	2	1	4	149	3R	151199	151425	AACGTATAATTGCCCTTGAG		57	151537	151555	ATAAGTCCGTAATCGGAGC		58	NA	
Drosophila melanogaster	50	CG14453	FBgn0037179	FBtr0078519	1	1	1	210	3L	22687212	22687230	TATTTGTTCTGCTCTTGGC		58	22687404	22687422	GAAGAAGTGGTGGTAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33766	FBgn0053766	FBtr0091767	3	1	1	61	3L	22639217	22639236	ATTCCGAAGTTCTTGTATGC		58	22639259	22639278	TTCCTTAACTGGTTCATGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7414	FBgn0037135	FBtr0078441,FBtr0114593	1	2	2	82	3L	21819506	21819584	TAGCAATGGGTTCAAGGTG		59	21819630	21819648	TTCCCAACAATTCCTGACC		59	NA	Nonspecific
Drosophila melanogaster	50	sa	FBgn0002842	FBtr0078401	1	1	1	86	3L	21399044	21399062	CATCGAGGTGATAACCCAC		59	21398681	21398699	AAATTTCCTGAGGATGGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sin	FBgn0028402	FBtr0078288	1	1	1	230	3L	21026150	21026232	TACTCTTTCGTTTCTCCCG		59	21026426	21026444	TTTCATTGTAGTGCTGCTC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	LCBP1	FBgn0036901	FBtr0074957	3	1	4	186	3L	19688119	19688137	TCTGGAATCTATCATGGCG		58	19685468	19686093	CTTGGTACATCTGTACACCTC		59	NA	InUTR
Drosophila melanogaster	50	ftz-f1	FBgn0001078	FBtr0075086,FBtr0075087	1	2	2	86	3L	18747722	18748241	AAATTGTGCTTCGATTCTGG		59	18747591	18747609	TTCACGAATCATCGGTGAG		59	NA	
Drosophila melanogaster	50	CG13379	FBgn0036804	FBtr0113179	1	1	1	60	3L	18674640	18674659	GCCAACTATCTGTACCAGTC		59	18674599	18674618	GTGTCTCGTTAAAGATTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33256	FBgn0053256	FBtr0075260	1	1	1	60	3L	16898641	16898659	ATTCTGAGATGCGTTACCT		58	16898683	16898701	CGTAACCTTGTGGATTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4950	FBgn0036587	FBtr0075479	2	1	1	60	3L	16259966	16259986	CACAACTTCAGAAATTGGGAG		59	16259926	16259946	AGATGATGTAGATAGGAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eig71Eh	FBgn0014848	FBtr0075583	3	1	1	60	3L	15652348	15652369	GATGTAGAAACAGAGTTAGAGG		57	15652309	15652328	TGAAGTTCGCAAAGATTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12355	FBgn0040805	FBtr0113333	3	1	2	103	3L	15487705	15487725	ACAATAGGAAGATATGCCGTG		59	15486637	15486655	ATAACCTTAGTGGTGCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hsc70Cb	FBgn0026418	FBtr0075771,FBtr0075772,FBtr0075773	3	3	3	200	3L	14032908	14032927	GATGATATCGACGTCTCGTC		59	14033087	14033172	GTTAAAGACCTGCTCAATAAGC		59	NA	
Drosophila melanogaster	50	caps	FBgn0023095	FBtr0075832,FBtr0111005,FBtr0075833	2	3	3	140	3L	13222156	13222174	GGTTAACGTTGTGTTTGGG		59	13231812	13244269	GTTCTGCCGGTATAATCCT		58	NA	InUTR
Drosophila melanogaster	50	CG11253	FBgn0036338	FBtr0075894	3	1	1	100	3L	13018563	13018582	GAACTATGCTTTCAACGAGG		58	13018420	13018438	TTAGCTCTATAAGTGGCGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nrx-IV	FBgn0013997	FBtr0075999	3	1	2	158	3L	12144500	12145287	ATGTCAAGATGTTCAAGGG		57	12145408	12145488	TTTCAGAGATGTAATCGCAG		57	NA	
Drosophila melanogaster	50	CG11534	FBgn0046296	FBtr0075995	2	1	1	60	3L	12126160	12126181	CTATAGTGGATTGTACTACTGC		57	12126200	12126220	GGCTGGTATAAAGTTACTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6928	FBgn0036240	FBtr0076049,FBtr0076050	2	2	2	91	3L	11999281	11999600	TTTGAACAGATGCTCTCGG		59	11999655	11999673	CCAAAGGCTTTCGAAATGG		59	NA	
Drosophila melanogaster	50	CG17826	FBgn0036227	FBtr0076042	1	1	1	60	3L	11943289	11943309	ATTACACCGAATCCAGATGAC		59	11943331	11943349	TCACTATGATTCCGTCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6091	FBgn0036180	FBtr0076143,FBtr0076141,FBtr0076142	2	3	3	104	3L	11600443	11600549	ACTGCTACCAGTCAAATCC		59	11600357	11600376	TAGCATTGTAGTGTGATCCG		59	NA	
Drosophila melanogaster	50	Sgs7	FBgn0003377	FBtr0076095	2	1	1	70	3L	11503212	11503230	CTCATTAGCGATATTCGCA		57	11503264	11503282	ATCATCCATTGTGGTTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6279	FBgn0036125	FBtr0076235	3	1	1	138	3L	11087404	11087422	CAAGCTACTCAAGCATTGG		58	11087229	11087302	AAAGTGTTCAACCTCCTCC		59	NA	
Drosophila melanogaster	50	CG7888	FBgn0036116	FBtr0076200,FBtr0076199,FBtr0076201	3	3	3	130	3L	11052080	11052098	TTCATCTCCCTGTTTGGAG		58	11052191	11052268	ACAAAGTTGCTTAACACCAG		58	NA	
Drosophila melanogaster	50	CG6404	FBgn0027615	FBtr0076271,FBtr0076272	2	2	2	138	3L	10877848	10877866	CTAAGAAGGGATTCGTCGG		59	10877654	10877672	AACTTGTACGTCTTGACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	ect	FBgn0000451	FBtr0076305,FBtr0076306,FBtr0076307	3	3	3	291	3L	10189411	10189429	ACAGACGGTCAACAATGAG		59	10188793	10188921	ATCCTCATCTTCATCATCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Ilp2	FBgn0036046	FBtr0076329	3	1	1	96	3L	9793221	9793239	GGGTGTACTCAATTCCCTG		59	9793299	9793317	AGCCTTCATATCACAGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326	2	11	11	88	3L	9773790	9773876	CTCATGAGATCTTTGTGCA		57	9773928	9773946	CTCATACTTGATCCAACGG		57	NA	
Drosophila melanogaster	50	CG16711	FBgn0036032	FBtr0076397,FBtr0076396	2	2	2	60	3L	9699307	9699328	CGATGCGAATACTAAGAATCTG		59	9699348	9699367	ATTCTGTAGCAGATCATCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nwk	FBgn0035966	FBtr0076532	2	1	1	122	3L	9132026	9132046	AAGATCTCATCGCAGTATCTC		59	9132220	9132238	TTTCTCATTCTCCTCGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	RpL14	FBgn0017579	FBtr0076633	2	1	1	106	3L	8594424	8594442	GATTCGTACAAACTGGTCG		58	8594512	8594762	ACCATCTACCAGAACTCTG		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG17352	FBgn0035880	FBtr0076675	2	1	5	141	3L	8346693	8346711	GAAAGGGATCAAGAACAGC		58	8346518	8346588	AGTGGGACTCACAAATAGC		59	NA	
Drosophila melanogaster	50	CG7194	FBgn0035868	FBtr0076714	3	1	1	60	3L	8296414	8296434	GTATTGTACTTCAAGACTGGC		58	8296374	8296394	GTCTGATTAGACCTGAATACC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8006	FBgn0035857	FBtr0076698	3	1	1	60	3L	8206425	8206443	CCAAGATCATGGAACTGTG		58	8206466	8206485	CTAAGGACTTTATGCGTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	syd	FBgn0024187	FBtr0076769,FBtr0076768	1	2	2	81	3L	7919927	7921024	TCGCATAAACGATAACGAC		58	7919864	7919882	GTAACTCTTATCGCCTCGA		58	NA	
Drosophila melanogaster	50	CG8541	FBgn0035788	FBtr0076862	1	1	1	60	3L	7464935	7464955	TACACTCCTGCTATTAAGACG		59	7464977	7464995	GAGTAGCCTGAGTGTACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	msl-3	FBgn0002775	FBtr0076926,FBtr0076927	1	2	2	86	3L	7117435	7117511	GTTATGTCCACTGTCTGCA		59	7117367	7117385	ATACAGCAAGTGGTCATCC		59	NA	
Drosophila melanogaster	50	Cpr65Eb	FBgn0035736	FBtr0076928	2	1	1	73	3L	7081512	7081531	GGCTCATCACAGTACTACAC		59	7081458	7081476	TGGAATCCGTTCTCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or65c	FBgn0041623	FBtr0077006	3	1	1	124	3L	6321948	6321969	GGATCCAAGGATGTTTATAGAG		57	6322053	6322129	CATTGGTTAAGTATAGCGCT		57	NA	
Drosophila melanogaster	50	CG32409	FBgn0052409	FBtr0077030	3	1	1	96	3L	5893077	5893095	ACCAAATGGGAGAAGTTCG		59	5893154	5893230	ATGTAGGCACCCATTTATCC		59	NA	
Drosophila melanogaster	50	Tektin-C	FBgn0035638	FBtr0077115,FBtr0113147	3	2	2	106	3L	5788690	5788708	GAAGCTCAAGGAGTTCCAG		59	5788197	5788215	CCAGATTCTCGTACGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dhc64C	FBgn0010349	FBtr0073359	2	1	2	81	3L	4811598	4811617	AACTTCGAGAAGGTTAATCG		57	4811475	4811554	TATCAGCGTACTCGATCTG		58	NA	
Drosophila melanogaster	50	CG33777	FBgn0053777	FBtr0091778	1	1	1	80	3L	4554689	4554770	TACCTGTCCCTTTAATGACG		59	4554628	4554648	GGGAGTACTGAAGTTACTTGG		59	NA	
Drosophila melanogaster	50	DopEcR	FBgn0035538	FBtr0100185,FBtr0100186,FBtr0073337	2	3	3	60	3L	4379449	4379467	AAACTGAGCAATGTCAAGG		58	4371891	4379425	CTAATTGTGCGCATCTGAG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	kst	FBgn0004167	FBtr0112840,FBtr0073070,FBtr0073072,FBtr0073071	2	4	4	81	3L	3365741	3365818	AGTCCATGAAGCAACAGTC		59	3365861	3365881	GAGTTACGAGAACTAACTGGT		59	NA	
Drosophila melanogaster	50	CG17723	FBgn0035432	FBtr0073057,FBtr0073055,FBtr0073058,FBtr0073054,FBtr0073056	1	5	5	85	3L	3312395	3312526	CATATTAGGTGCCGTAACCT		59	3312574	3312592	GTAGAGTGGATACCCTCGT		59	NA	
Drosophila melanogaster	50	pfk	FBgn0035405	FBtr0073028,FBtr0073027	2	2	2	60	3L	3160952	3160971	AATCACAAATGATCGACGAG		58	3160991	3161012	CCAGCTTCTAGTTCCATAAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Shab	FBgn0003383	FBtr0072975,FBtr0112829	2	2	4	85	3L	2941551	2941572	CTCCTTCCATCATATCAATCTG		58	2941618	2942577	TTGTTTGCTTTCCTGTGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Shab	FBgn0003383	FBtr0072974,FBtr0110776,FBtr0072975	1	3	4	67	3L	2925425	2925443	GAAGTATCTGTGGGAGCTC		59	2925474	2940796	ATATCACTGCGATAACCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1146	FBgn0035346	FBtr0072921,FBtr0072922,FBtr0072923	2	3	3	69	3L	2491992	2492010	CTACTCCATCACCGATCTC		58	2492043	2492061	TTCGTTGATGTACGTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1887	FBgn0035290	FBtr0113125,FBtr0072859,FBtr0113124	2	3	3	61	3L	1894438	1894614	AATACAACCGAAACTTGGAG		58	1894396	1894417	CTTTAAGATTCAGCTGTATCCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	metl	FBgn0035247	FBtr0072813,FBtr0072814	1	2	2	60	3L	1638099	1638117	GACTGCAAGTTAATCGCTG		59	1638057	1638076	AACTTTGTCTGAATCCACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LysX	FBgn0004431	FBtr0072637	3	1	1	78	3L	1195084	1195102	ATGGATCCAACGACTATGG		58	1195024	1195042	TTGTGGGAGAACTTTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RhoGEF3	FBgn0035128	FBtr0089654	3	1	4	110	3L	298098	298116	GCTTGTCATGAAGGATCCA		59	299009	300905	ATTTGCTGTGACAAACTCG		58	NA	
Drosophila melanogaster	50	CG34140	FBgn0083976	FBtr0110975	2	1	1	60	3L	183692	183766	CTTTCTGCAATCTTCTAGCT		57	183651	183669	GATAAACATTCGAGCTGCA		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Pk61C	FBgn0020386	FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466	1	8	8	86	3L	142804	142822	ATATCGCGACTGCTTAGTG		59	142872	142953	GTCGAAAGAGTTCTTTGCG		59	NA	
Drosophila melanogaster	50	CG4589	FBgn0019886	FBtr0072347,FBtr0072348,FBtr0072349	1	3	3	81	2R	20398428	20398446	CATCGAAGCTGTACTGGAG		59	20398305	20398383	GGATTCCAACACCTTACGA		59	NA	
Drosophila melanogaster	50	DnaJ-60	FBgn0020129	FBtr0072278,FBtr0072279	1	2	2	140	2R	20046224	20046242	AACTACGATCCCAATCCAG		58	20046041	20046120	TTTAAAGGACGACCTGACG		59	NA	
Drosophila melanogaster	50	CG13559	FBgn0034870	FBtr0072057	2	1	1	68	2R	19391055	19391073	TAGTCTTGTTCACCACCTG		58	19391105	19391123	TCTCGTTGAAACAGTCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30190	FBgn0050190	FBtr0113362,FBtr0113363	3	2	3	122	2R	18817732	18817750	CAGGATGACATCAGCTCTG		59	18817835	18819049	CATGGATTTGTCCTCATTGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG3746	FBgn0034755	FBtr0071929	2	1	1	63	2R	18537160	18537178	GCCAGGAATATTATTGCCA		57	18537115	18537133	CATGATCATCGATGAAGGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2852	FBgn0034753	FBtr0114458,FBtr0071933	1	2	2	60	2R	18533800	18533819	GTCGCTTGAGGAATAAACTG		58	18533759	18533778	GGATAAGAACAGCTTCATCG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	RpS16	FBgn0034743	FBtr0071855	3	1	1	155	2R	18494544	18495270	TACCAGAAATACGTCGATGAG		59	18495387	18495405	TTAACGGTACGACTTCTGG		59	NA	
Drosophila melanogaster	50	CG10384	FBgn0034731	FBtr0071831	3	1	1	60	2R	18359006	18359024	ATGTTTGCGTAGTTGATGC		59	18359047	18359066	ATCGGTATAGCCTTACTACG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG13506	FBgn0034723	FBtr0071822	3	1	1	81	2R	18274022	18278494	GACAACTATACGTGAGTTGTG		58	18278537	18278555	TACTCATACTCGTCGTCCT		59	NA	
Drosophila melanogaster	50	Vrp1	FBgn0034695	FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104	2	7	7	87	2R	17998431	17998841	CAACCTAAATATCTCGTTAGGC		58	17998365	17998384	TAGACTGCTGTTTAAGGACG		59	NA	
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708	3	9	9	94	2R	17398737	17398915	TTTGCCAGAGGATTACGTC		59	17398972	17398991	AACCAATCACCGACTTTAGG		59	NA	
Drosophila melanogaster	50	CG13430	FBgn0034518	FBtr0100496	2	1	2	69	2R	16439265	16439284	ATGCTGAGACTTTAATCCCT		58	16439215	16439233	TTTGGTGCATAATCTGTGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	betaTub56D	FBgn0003887	FBtr0086536,FBtr0086538,FBtr0086539,FBtr0086537	2	4	4	67	2R	15335671	15335690	CTCTACGATATCTGCTTCCG		59	15335623	15335641	ACAAGATGGTTCAGGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cora	FBgn0010434	FBtr0086507,FBtr0086509	1	2	4	182	2R	15124300	15124318	TTCAATAGGACTCTGTCCG		58	15124561	15125668	CTTATCAGCATCCTTCTCCT		58	NA	
Drosophila melanogaster	50	CG15117	FBgn0034417	FBtr0086594,FBtr0100129,FBtr0086593	1	3	3	80	2R	15010463	15010482	ATAAACGCTACAACAAACCC		58	15010303	15010421	CATAAGCAGGTTGCATATGC		59	NA	
Drosophila melanogaster	50	slim	FBgn0026173	FBtr0086692,FBtr0086693	1	2	2	157	2R	14331579	14331597	TGAAACGTATCCCGATCAG		59	14331858	14331876	AATATGTGGAGAAGTCGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18540	FBgn0034326	FBtr0086762	2	1	1	61	2R	14187100	14187121	CTTCTGGAATATTGATGTGGAC		58	14187203	14187222	AGTAACTGCTCAGAATACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34005	FBgn0054005	FBtr0100060	2	1	1	134	2R	13935949	13935967	TCAGGAGGAGATTCGAGAG		59	13936121	13936139	ATACTGTAGACATTCGCCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10936	FBgn0034253	FBtr0086894,FBtr0086895	1	2	2	81	2R	13494101	13494119	ACCAGAGCTACTTGATCAC		58	13493968	13494058	GGAATAAACTTCGTTGAGCTG		59	NA	
Drosophila melanogaster	50	robl	FBgn0024196	FBtr0086920	1	1	1	193	2R	13344213	13344299	CAATGAAGGTATTCCGGTC		57	13344456	13344474	TCAGGATGAAGTCCTTGTC		58	NA	
Drosophila melanogaster	50	CG15609	FBgn0034180	FBtr0114626,FBtr0087019,FBtr0114627	1	3	6	81	2R	12900834	12900852	AGCAACTGGAGCATATGAC		59	12900261	12900792	TCTTCTGATAACGAAGGTACAC		59	NA	
Drosophila melanogaster	50	CG30461	FBgn0050461	FBtr0100249,FBtr0100251,FBtr0100250,FBtr0100252	1	4	4	60	2R	12883879	12883899	GCAGCTTATTCTCAGTAATCG		58	12883785	12883803	TTTCTTGATTCGCGAACAG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG5267	FBgn0034154	FBtr0087021	2	1	1	60	2R	12642917	12642937	ATAGGTGAAGAAATAGCCCTC		58	12642958	12642977	GCTGCTTGATATACTTCTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8291	FBgn0034049	FBtr0087298,FBtr0087299,FBtr0087300	3	3	3	90	2R	11812694	11812776	GGATACAGAACATCTTTGCTG		59	11812624	11812642	GTAAGAAACGTTTCCTGCG		59	NA	
Drosophila melanogaster	50	CG8187	FBgn0034027	FBtr0087355	3	1	1	101	2R	11428033	11428051	AGTTTCAGACACAAACTGG		57	11427897	11427971	CATGTACTCCAGTCATATTGAG		58	NA	
Drosophila melanogaster	50	mus210	FBgn0004698	FBtr0087373,FBtr0087374	2	2	3	111	2R	11200223	11200241	AAGTCAACGCGAATAAAGC		59	11200316	11202134	ATAGATCTGCATCTGCCAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG10151	FBgn0033960	FBtr0087471,FBtr0087472,FBtr0087473	3	3	3	60	2R	10641561	10641579	AAACTACATCAGAGCCTGC		59	10641519	10641537	CCTTCTCCAGTTGAATGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12869	FBgn0033943	FBtr0087496	2	1	1	164	2R	10480310	10480328	CGATCCTGATTCACCTGTC		59	10480525	10480543	ATCGTAGTTCGTTGATGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG13333	FBgn0033855	FBtr0087676	1	1	1	63	2R	9443698	9443716	CAACAACTACGACAACCAC		58	9443743	9443761	ATGTTCAGGAGATCAGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835	3	6	8	110	2R	8504608	8504626	CCTGCATATTTACCCACTG		57	8504697	8505312	GACGTCTACCATTCTAAATCTG		58	NA	
Drosophila melanogaster	50	Drip	FBgn0015872	FBtr0088141,FBtr0088142	3	2	2	186	2R	7300292	7300311	AGTATCCTCCTTTGATCCCT		59	7300068	7300143	GCTCAGTTTGATTGCACAC		59	NA	Nonspecific
Drosophila melanogaster	50	CG9027	FBgn0033631	FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897	3	4	4	193	2R	7269622	7269641	AATCGGATAATACCCAGGTC		58	7269385	7269466	ACCGTGATCAACCTTATCG		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	3	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421093	TAGTAAGGTAGCAAAGTAGGGA		59	NA	
Drosophila melanogaster	50	G-oalpha47A	FBgn0001122	FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265	2	9	9	198	2R	6348939	6349026	GAATACACAGGTGGACAGG		59	6349188	6349206	CTTAGTACAGTCCACAGCC		59	NA	
Drosophila melanogaster	50	Or46a	FBgn0026388	FBtr0088331	1	1	2	60	2R	6028875	6028896	TGTGCTGAATATAACCTACGAC		59	6028915	6028935	CTGAACCTTCAAGAAACAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1623	FBgn0033448	FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487	3	4	4	70	2R	5716115	5716133	GAACTACGAACCCAAGACC		59	5716063	5716082	TATCCGGATACTTGTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ced-6	FBgn0029092	FBtr0088550,FBtr0088548,FBtr0088549	2	3	3	133	2R	5324291	5324933	CTAGTCAAGTTCTTTGGTAACC		58	5324179	5324197	TTCTTGAACTTCTCCTGGG		58	NA	
Drosophila melanogaster	50	CG8046	FBgn0033388	FBtr0088620	2	1	2	154	2R	5051972	5052051	GAAACAAAGAGAATTGAGGAGC		59	5051839	5051857	AAAGAGCACATGAGAAGGG		59	NA	
Drosophila melanogaster	50	Mys45A	FBgn0033379	FBtr0088628	1	1	1	60	2R	5000720	5000739	ATGGAATGATTCTAAGACGG		57	5000679	5000698	TGTTACCTTAGAGAAGCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	3	9	9	95	2R	4568140	4568158	ATGAGCAGATCAAGACCTG		59	4568217	4568298	TATCACGGTAGTCCATGAC		58	NA	
Drosophila melanogaster	50	Dgk	FBgn0085390	FBtr0112581,FBtr0112580	1	2	4	80	2R	3738267	3738287	CATTGTTAACCAGATGATGGC		59	3736487	3738226	ATCATCTCTTGCAGTATCGG		59	NA	
Drosophila melanogaster	50	CG12826	FBgn0033207	FBtr0088943	1	1	1	90	2R	3558415	3558433	ATTGTACTCGTGGATCTGC		59	3558343	3558361	TTCGTAGCTATCCAAGTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpld	FBgn0015930	FBtr0088985,FBtr0088987,FBtr0088986	2	3	3	142	2R	3371482	3371500	TAGTGTTCGACAACCATGG		59	3371296	3371378	GGAAAGAATGTCGTTGATGTC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111093,FBtr0111073	3	2	60	111	2R	3236477	3245110	AATGCCGTTCTTTAGATGG		57	3236384	3236403	TGCGTCCTTAATAATGAGAG		57	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111064,FBtr0111057,FBtr0111100	3	3	60	85	2R	3247004	3247022	AGCACCTTAAGGGAAAGAG		58	3236471	3246958	CTTGTACCATCTAAAGAAAGGC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111068	2	1	60	98	2R	3245024	3249236	ATTGGTCATCACAGAACCC		59	3244944	3244962	ATAGCTAGACTGCGATCCT		59	NA	
Drosophila melanogaster	50	CG30385	FBgn0050385	FBtr0089047	3	1	1	60	2R	3069405	3069424	CAATCTACAGTGACGATCCA		59	3069446	3069465	TAATTCCATTGATGCGAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	geminin	FBgn0033081	FBtr0086147	2	1	1	66	2R	2543692	2543710	TACATCCAAGTCGAGACAG		58	2543644	2543662	GTTTCAGGGTCTGTCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34211	FBgn0085240	FBtr0112404	1	1	1	60	2R	1934727	1934745	GGATATCTCAGTGCTGTGG		59	1934769	1934787	CACCAAGAAGATGAACAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11163	FBgn0025693	FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053	2	4	4	80	2R	1662572	1662645	TGCATCTCGTTACAGACTC		59	1662510	1662529	TATATCTTGGGCTGGATACG		58	NA	
Drosophila melanogaster	50	cta	FBgn0000384	FBtr0111126	1	1	1	86	2L	22883614	22883690	CGTTATAAGAGGTATGCAAGTC		58	22883737	22883755	TAAGCATCCTGTTCTCTGC		59	NA	
Drosophila melanogaster	50	lt	FBgn0002566	FBtr0111123,FBtr0111125,FBtr0111124	2	3	3	80	2L	22832738	22832817	CATAGTTGACTACTTTAGCCC		57	22832858	22832877	AGTGATTGTCGAAGATTTGG		58	NA	
Drosophila melanogaster	50	CG15219	FBgn0040519	FBtr0085944,FBtr0085945	1	2	2	62	2L	22105128	22105146	TTCGTGAGATGAACTCTCG		59	22105020	22105038	TTATAGTAGTCGCCTTGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31600	FBgn0051600	FBtr0085949	1	1	1	92	2L	21914959	21915026	TTGTTCTCGGGCTTATACC		59	21914885	21914903	TATAGCTCCTGTTCATGGC		58	NA	
Drosophila melanogaster	50	CG10947	FBgn0032857	FBtr0081368,FBtr0081369,FBtr0081370	1	3	3	60	2L	20387006	20387025	GGAGAACTGGTACAAATACC		57	20386965	20386983	GATGTTCACCGAGTACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10659	FBgn0032839	FBtr0081350	1	1	1	60	2L	20025651	20025669	AGTCTACTAGCGAGAACGT		59	20025609	20025627	GACAGGTGATACTCATCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10337	FBgn0032805	FBtr0081276	3	1	1	86	2L	19546210	19546229	ACTTTAAGAGCAACCATGCT		59	19546077	19546095	TGAAATACAGCGGAAGACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	brat	FBgn0010300	FBtr0081159,FBtr0081158	1	2	3	124	2L	19166350	19168104	GCAGTAAAGCTGTTACTCC		58	19168192	19168210	TACGATTCAATCGAGTTCG		57	NA	InUTR
Drosophila melanogaster	50	CG10470	FBgn0032746	FBtr0081146	3	1	1	124	2L	19049292	19049310	ACATGGGTGATGGTTTACC		59	19049455	19049473	TTCTTTACCGCTTTGTCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	ninaD	FBgn0002939	FBtr0081031	2	1	1	83	2L	18083180	18083262	AGAACTTAGGTTGGCACTG		59	18083309	18083327	GCTATAAGAATGCAGCCCA		59	NA	
Drosophila melanogaster	50	Ugt36Bb	FBgn0040261	FBtr0080910	3	1	1	60	2L	16797770	16797788	CTATTCATAACCCATGCGG		58	16797810	16797830	TGGGAACTCCATGATATTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080898,FBtr0080903,FBtr0080900	3	3	13	99	2L	16779120	16779138	CAAGGGTATTGAGGATCCC		59	16779199	16780558	GAAGAACACCTTTGTGTTACC		59	NA	
Drosophila melanogaster	50	CG5968	FBgn0032588	FBtr0080872	2	1	1	60	2L	16549405	16549425	CAGGACATTCCTAGTTCATCC		59	16549365	16549383	TTCGCTTAATCAGCTTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5861	FBgn0015338	FBtr0080850	1	1	1	75	2L	16306694	16306712	CGAGTTCAACTTCTTTGCG		59	16306567	16306585	CAAGATTAGGGCGAATCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4587	FBgn0028863	FBtr0112944,FBtr0112943	1	2	2	80	2L	15650698	15650779	TTCGCGTAACAATGTTACC		58	15650636	15650657	CTATTGTACTCACAATACACCC		58	NA	
Drosophila melanogaster	50	CG31828	FBgn0051828	FBtr0080742	1	1	1	84	2L	15370033	15370321	CAATTTGATGTGCAGGACTG		59	15369968	15369986	TCTATTTGGCATCCTGGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG33678	FBgn0053678	FBtr0091658	2	1	1	60	2L	15071256	15071274	GAAATGCATCAAGTGACCA		58	15071298	15071316	TTTATGGGAGGCAGTAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31840	FBgn0051840	FBtr0080607	3	1	1	62	2L	14023998	14024016	CACGAGTATGTACATCGGT		58	14023954	14023972	GTTTGAATGAGTTGCAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34003	FBgn0054003	FBtr0100058	1	1	1	79	2L	13967623	13967643	CGATGGTTATGTGAATAAGGG		58	13967564	13967582	ACAATCCATTGGAGCAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7916	FBgn0028534	FBtr0080549	1	1	1	130	2L	13847073	13847091	TACACCAATGCTGATCTCC		59	13847240	13847258	CTAAAGGTGTAGCTGACCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090021,FBtr0090013,FBtr0090027	3	3	17	91	2L	12731059	12737970	TCTTTATGGTTCTGGCTACC		59	12738024	12738042	GAAGTAGTACAGGAAGGCG		59	NA	
Drosophila melanogaster	50	bru-2	FBgn0043904	FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351	2	4	4	138	2L	12385726	12389193	ATTGGAGCTATAAAGGCCC		59	12389295	12389313	TATTGATGCCACAGAATGC		58	NA	
Drosophila melanogaster	50	Ced-12	FBgn0032409	FBtr0080330	1	1	1	90	2L	12099897	12099917	GCGATTGTTAAGCTCAAAGAG		59	12099969	12100050	AATGTGTACCTTCCACCAG		59	NA	
Drosophila melanogaster	50	CG14935	FBgn0032382	FBtr0080277,FBtr0080276	1	2	2	95	2L	11852014	11852090	CTTTAAGCGGTCCTATCCC		59	11852148	11852167	TGGCTAAGAAACTCTGAGAG		58	NA	
Drosophila melanogaster	50	crol	FBgn0020309	FBtr0080260,FBtr0080263,FBtr0080261	2	3	4	151	2L	11797737	11797844	GTGAAACCGATCATAATTCCC		59	11797606	11797624	GCATTATGTGAGATGAGCG		58	NA	
Drosophila melanogaster	50	CG4788	FBgn0032354	FBtr0080202	2	1	1	60	2L	11179474	11179492	TGGACAGCTAGTATACCGA		59	11179513	11179534	GATCACATAGTTGATGACATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4738	FBgn0032347	FBtr0080199	1	1	1	80	2L	11126834	11126908	CATCAATAAGATGCTTTGGC		57	11126951	11126969	ACAATGATGTGATGACAGG		57	NA	
Drosophila melanogaster	50	CG17127	FBgn0032299	FBtr0080136	2	1	1	60	2L	10771192	10771212	ATCAATCTCTTCGAGATCCTC		58	10771234	10771252	ACTGCAGGTTGTTTATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5096	FBgn0032235	FBtr0080006,FBtr0113034	3	2	2	130	2L	10383793	10383876	TGGCGACAATGTATTTCCA		59	10384031	10384051	TGTCGGACAATATCAGTTCAG		59	NA	
Drosophila melanogaster	50	CG5390	FBgn0032213	FBtr0080064	3	1	1	80	2L	10304764	10304839	AGTAGCATTGTTGTGAGAG		57	10304702	10304720	CTTGACATATCGGTCTTCG		57	NA	
Drosophila melanogaster	50	CG13138	FBgn0032211	FBtr0080066,FBtr0080067	1	2	2	60	2L	10301076	10301094	GTACCGAAACCGTATCCAG		59	10301034	10301052	CTGGCACCTTTATTTCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13121	FBgn0032145	FBtr0079922	1	1	1	60	2L	9770968	9770986	TGGAGGAGTCCTACTATCG		59	9770926	9770945	CCATTGATGTAACTCTGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32985	FBgn0052985	FBtr0079757	3	1	1	91	2L	8963274	8963358	ATGGGCTACAATAAGGTCG		59	8963413	8963431	CAAATTTGAGTCTCTGCCG		59	NA	
Drosophila melanogaster	50	CG13095	FBgn0032049	FBtr0079701	2	1	1	60	2L	8495679	8495697	CGTTCTACAACATGGTGTC		58	8495637	8495656	GCCAGATAGAACGAGAAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13384	FBgn0032036	FBtr0079657,FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079655,FBtr0079658	1	6	6	81	2L	8387350	8387368	ATTACCCTAAATCTGCCGC		59	8387693	8387711	TATACGAGAGGAAGATGGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7840	FBgn0032014	FBtr0079598	1	1	1	60	2L	8306565	8306583	GCAATCAAACGATCAATGC		58	8306606	8306625	TATTCCCTGAATGTTTCCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567	2	8	9	165	2L	8089727	8105702	CAATCACTTGATAAGCTGGTG		59	8106859	8106877	GAGAAGGTACATCCGTCAC		59	NA	
Drosophila melanogaster	50	CG7154	FBgn0031947	FBtr0079488	1	1	1	93	2L	7783885	7783903	TTTAATAGGCAGCAGTCCC		59	7784013	7784031	TGTAAGGGCATTAAGGGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Slob	FBgn0024290	FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518	2	4	4	80	2L	7649009	7649027	TGAGGACTTAGTCCTTTGC		58	7648879	7648968	GGCTTAATTGTACTGAAACAGG		59	NA	
Drosophila melanogaster	50	wg	FBgn0004009	FBtr0079433,FBtr0079432	2	2	2	99	2L	7313107	7313125	ATGAATCTGCACAACAACG		59	7314366	7314384	TCTTCACTGTACACGATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	SP1070	FBgn0031879	FBtr0079354	3	1	1	90	2L	6983241	6983324	AGTGTCAGGAGGTCTACTG		59	6983169	6983187	ATTGCTATACCGCGATAGG		59	NA	
Drosophila melanogaster	50	Tsp	FBgn0031850	FBtr0114489,FBtr0114488,FBtr0079312	2	3	6	112	2L	6688877	6688895	CTACTCCGTGGATTATCGC		59	6688725	6688802	ATCTGTAGGAACCAATCTCG		58	NA	
Drosophila melanogaster	50	CG11050	FBgn0031836	FBtr0079292,FBtr0079293,FBtr0079291	3	3	3	105	2L	6616056	6616075	ATCCAAAGACGATAAGCGAG		59	6616142	6616222	CTCGTATTCCTCAAACAGCT		59	NA	
Drosophila melanogaster	50	mmy	FBgn0086705	FBtr0079268,FBtr0079269	2	2	2	184	2L	6471423	6471441	AGCTAATCTCCATTGCCAG		59	6469889	6469907	GAACAGGGTCTTTCGAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9498	FBgn0031801	FBtr0079282	2	1	1	115	2L	6350392	6350410	TCATTCTTCAGCAACTGGG		59	6350231	6350249	CTTCATCAGGATGTCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Kr-h1	FBgn0028420	FBtr0079194,FBtr0079195	1	2	2	118	2L	6095044	6095062	GCTAACTACGATGACACCC		59	6095143	6095246	AGAGCGGATTCATATTTGGG		59	NA	
Drosophila melanogaster	50	CG8680	FBgn0031684	FBtr0079025	2	1	1	102	2L	5099666	5099748	TACATCAACCTGGACAAACC		59	5099583	5099601	ATTGGCCACTATGGTTTCC		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	qtc	FBgn0028572	FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260	2	5	7	99	2L	5069212	5070107	CGCGTAAGACCATTTATCG		58	5070169	5070188	TAGAAGATAGCGCTCTTGAG		58	NA	
Drosophila melanogaster	50	CG3792	FBgn0031662	FBtr0078997	2	1	1	60	2L	4978289	4978308	CACTTTCATTGCCTCTACCT		59	4978331	4978349	CCAGTAGTAGATCAGCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2837	FBgn0031646	FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403	1	4	4	164	2L	4904902	4904923	GTTTACTCCAATATACCACCGA		59	4904700	4904721	CTTGTTGAACGATTGATCATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Taf12L	FBgn0031623	FBtr0077420	3	1	1	60	2L	4701443	4701461	GTAACATGGAACCTTGGTC		58	4701401	4701419	TTATCCGACGATTTATCGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)k05819	FBgn0022153	FBtr0077433,FBtr0077432	3	2	2	87	2L	4396832	4396851	AAACAGATTGGATTCACCGA		59	4396901	4396981	CAACATCAGGTTGCAAGTG		59	NA	
Drosophila melanogaster	50	CG3652	FBgn0031600	FBtr0077460	1	1	1	137	2L	4393372	4393390	CATACTACAAGGCTCCTCC		58	4393191	4393271	AAGAATGAGATATTGCCGC		57	NA	
Drosophila melanogaster	50	Traf1	FBgn0026319	FBtr0112925	2	1	3	129	2L	4372532	4378918	AACAGATTATCTATCCCGGTC		58	4379009	4379027	TTACAGGCGTTGAGATGTC		59	NA	
Drosophila melanogaster	50	capu	FBgn0000256	FBtr0077511,FBtr0077513,FBtr0077512,FBtr0077510	3	4	4	86	2L	3879058	3884044	AGTTCGAAGGTCAAATGCT		59	3878990	3879009	ATTCCTGATTAGCATCACCG		59	NA	
Drosophila melanogaster	50	CG34394	FBgn0085423	FBtr0112638,FBtr0112641,FBtr0112639	2	3	4	104	2L	3363376	3363396	CGAACTGTATTCCATAGACGT		59	3363181	3363310	TGATCATCGACAGTTCTGG		59	NA	
Drosophila melanogaster	50	Prx6005	FBgn0031479	FBtr0077684	2	1	1	161	2L	2877381	2877621	CGCAACTTTGATGAAATCCT		59	2877239	2877257	GGTTTCGATACCATCAGGA		58	NA	
Drosophila melanogaster	50	Or23a	FBgn0026395	FBtr0077698	2	1	1	60	2L	2654762	2654782	TCCTGAGAATCTCTGAAATCG		59	2654804	2654822	AGATCCTGTTCGTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpp	FBgn0000490	FBtr0077774,FBtr0077772,FBtr0077775,FBtr0077771,FBtr0077773	2	5	5	61	2L	2458369	2458387	GACCACTTTAACTCGACCA		59	2458411	2458430	CCGGGATTCATATTGTTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab5	FBgn0014010	FBtr0077793,FBtr0077798,FBtr0077796,FBtr0077794,FBtr0077797,FBtr0077795	3	6	6	203	2L	2360797	2360985	AACTGCATAAACAAGCCTC		58	2360549	2360569	CGTTCTTAGGTAGTTTCTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5565	FBgn0031335	FBtr0077944	3	1	1	60	2L	1355719	1355739	CACTCATGTCATCTTTGACTG		58	1355607	1355625	TTTGAGGTAGATGCCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5118	FBgn0031317	FBtr0077979	3	1	1	98	2L	1171783	1171802	TTTATAAGCGGAAACACCGA		59	1171634	1171722	GTGAATGGGTAGCAATCCT		59	NA	
Drosophila melanogaster	50	CG15880	FBgn0031283	FBtr0078040	1	1	1	60	2L	817140	817159	GAGTTCATCTCCTGTGAGTG		59	817099	817119	GGTAGAAGTCAAAGTAGACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hsp60B	FBgn0011244	FBtr0078000	1	1	1	60	2L	729212	729230	CGCCCTTGTAATGATATCC		57	729251	729272	CAGACCTTTAACTATTTGCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13692	FBgn0031254	FBtr0078057	3	1	1	60	2L	421873	421891	AATCCATCGATGAGACCAC		59	421915	421933	TGGATTCGGTAAATCCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL10	FBgn0031231	FBtr0078124	1	1	1	60	2L	204369	204389	GAAGAATACTCGATACGAAGC		58	204410	204429	GAAGACGATGCAATGATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR33963	FBgn0053963	FBtr0100004	2	1	1	60	X	12553621	12553640	TGTTTCTCGTGTATCTTGTG		57	12553663	12553681	GGGAATGTAAGTTGACCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	run	FBgn0003300	FBtr0077279	2	1	1	249	X	20566412	20566839	GCCAAGAAGTAAGCAAAGC		59	20567052	20567070	ATACTCAGATGGCTGAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp19c	FBgn0031111	FBtr0077326	1	1	2	281	X	20289740	20289758	TAATGACGATAGTGGTCGC		59	20289411	20289496	TCAACTTGATCTTCTTGAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15460	FBgn0031104	FBtr0113006	2	1	1	106	X	20261538	20261556	CTCGATCTTGGACATGGAG		59	20261394	20261468	TCTTTACGTCCAGCATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14218	FBgn0031031	FBtr0074770	2	1	1	77	X	19474950	19475030	TGATACCTTCTTTAGGTCGC		59	19474892	19474910	GAGTCAACTAAGTCTCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32495	FBgn0052495	FBtr0089800	2	1	3	159	X	17798009	17798027	ACTATATGGCACACGTGTC		59	17798678	17798841	TTATCCGGCATATTGTGCA		59	NA	
Drosophila melanogaster	50	CG4239	FBgn0030745	FBtr0074270,FBtr0074269,FBtr0074268	1	3	3	243	X	16281095	16281113	AATGTTTCCGTTCTTCGAC		58	16281320	16281395	GTAGAAGACGACGTACCAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	caz	FBgn0011571	FBtr0074217,FBtr0074218	1	2	2	117	X	16186669	16186931	TGCAATAGATGTAAGACTCCC		59	16187010	16187028	ATCCACGATCATTTCCTCG		59	NA	
Drosophila melanogaster	50	CG32603	FBgn0052603	FBtr0073894	1	1	1	162	X	14078631	14078754	GAAATTCTTCGCTATCCTCTC		58	14078878	14078896	AACATAGGTCTCAGAGGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17255	FBgn0030205	FBtr0071461,FBtr0071460	3	2	2	61	X	10365931	10365952	CACAGCGTTAGATATAAATCGC		59	10365795	10365813	CAGATGGTTCACTTGACTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Marf	FBgn0029870	FBtr0070909,FBtr0070910,FBtr0070908	3	3	3	104	X	6262082	6262568	CAGGAATCGGTTAAGTCTC		57	6262636	6262654	AACGAAGAATACCCTTTCG		57	NA	
Drosophila melanogaster	50	CG15773	FBgn0029795	FBtr0070806	1	1	1	192	X	5627566	5627584	CATGGGATTCTATCCCACC		59	5627740	5627957	TACAAGGGTATCTTGCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	torp4a	FBgn0025615	FBtr0070690	1	1	1	62	X	4543647	4543665	ATACATATTGCCGGTTTGC		58	4543545	4543621	ATTCATCTATTCTCGCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32774	FBgn0052774	FBtr0070662	1	1	1	95	X	4139675	4139790	CTTTGTTTAACTGTGGGCC		59	4139598	4139616	ATTGTTCAAGCTGGTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3939	FBgn0040396	FBtr0070508	3	1	1	67	X	3069646	3069664	GAGAAAGACAAGGACGGAC		59	3069969	3069988	GCACTCATGATAGTTTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF2B-beta	FBgn0024996	FBtr0070479	3	1	1	72	X	2599945	2600031	TTCATATCCAACACCGGTG		59	2600066	2600085	CTTCGGGATGATACAGTTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	TfIIA-S-2	FBgn0040338	FBtr0070184	1	1	1	210	X	905422	905521	GATGAGATGATGGAGAGGG		58	905230	905248	TCAAGGAATGCTGATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12071	FBgn0039808	FBtr0085716,FBtr0085717	2	2	2	161	3R	26705208	26705226	CAACTGACCTACAACATCC		57	26704954	26705083	CTTGTTGGTGGACTTTGAG		58	NA	
Drosophila melanogaster	50	CG7829	FBgn0039703	FBtr0085531	3	1	2	66	3R	25643104	25643122	CCATGGACTATGACATCGG		59	25643005	25643077	GCCTTTACCTTTCTAGATAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ALiX	FBgn0086346	FBtr0085241	1	1	1	107	3R	23522541	23522618	TCCTGGTAACTATCAGTACCA		59	23522454	23522472	TTCTGGTTGGGATATCCAC		58	NA	
Drosophila melanogaster	50	CG33494	FBgn0053494	FBtr0089607	2	1	1	118	3R	21320015	21320033	ATCCTCTTATGGTCGACAG		58	21319779	21319798	TTGTCTGAGTTTCTTATCGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31184	FBgn0051184	FBtr0084505	2	1	1	97	3R	19822421	19822499	TCTTCACGCCTTTGATCAG		59	19822560	19822578	ACACCTCCTCATAGGTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31141	FBgn0051141	FBtr0084490	2	1	1	95	3R	19749235	19749255	CGAGAACCTTATAATCTGCGA		59	19749312	19749389	CATGAAGTAGTATCCGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31281	FBgn0051281	FBtr0084339	2	1	1	105	3R	18792274	18792360	GCTAACATGAAGGACTCCC		59	18792429	18792447	GAGAAATTCTCTTCGACCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5558	FBgn0038684	FBtr0083748	2	1	2	188	3R	14986897	14987089	AAAGAAAGAACACTTGGCG		58	14986727	14986745	CAGTAGTTGGACCACTTGG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14302	FBgn0038647	FBtr0083673	2	1	1	199	3R	14558429	14558521	TGAAATTCTTCAACCTGCTG		58	14558682	14558701	ATAGATGGTCGACGTTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14306	FBgn0038628	FBtr0113245	1	1	1	82	3R	14418092	14418110	ATGAAGTGTTACCGATCCC		59	14418155	14418464	TTAATCTCGATTAGCTTCCG		57	NA	DesignNoJunction
Drosophila melanogaster	50	koko	FBgn0051232	FBtr0083625	3	1	5	156	3R	14225882	14229247	TATCATTCTGGAGTTCGGC		59	14229433	14229451	CAAAGATGTACATCGGCAC		58	NA	
Drosophila melanogaster	50	Hmx	FBgn0085448	FBtr0112715	3	1	1	140	3R	13393280	13393298	ACCAGAACTGTATTCTCGC		59	13393402	13393420	CTGGAACCAGATCTTCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31267	FBgn0051267	FBtr0083404	1	1	1	65	3R	12960086	12960104	GAAGAATCCGATGTCCTGG		59	12960133	12960317	AAAGTGGTTACCATAGGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083351,FBtr0083347	1	2	6	80	3R	12550978	12550996	GGCATATCAACAGACATGG		58	12484785	12536291	ACCATTTGTACCTAGCCAG		58	NA	
Drosophila melanogaster	50	CG12419	FBgn0037769	FBtr0082148	3	1	1	108	3R	5807763	5807782	AATGAATTACTACGTGGAGC		57	5807853	5807871	CATCACTGAATCCTCGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16905	FBgn0037762	FBtr0082144	3	1	1	176	3R	5639947	5639965	ATCCATGGATAACCATGGG		58	5640104	5640188	CAAACAGGAAGTGAACTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16905	FBgn0037762	FBtr0082144	1	1	1	175	3R	5639947	5639965	ATCCATGGATAACCATGGG		58	5640104	5640187	AAACAGGAAGTGAACTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33779	FBgn0053779	FBtr0091780	2	1	1	63	3R	4030429	4030501	AAACTTGCGCATTGATTCC		59	4030384	4030402	GTGCCATTTGAGGTAATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dsx	FBgn0000504	FBtr0081760,FBtr0081761	2	2	3	75	3R	3761527	3761547	GTGATATTAAAGGACGCAGAC		58	3761358	3761490	CATTCACAACGTATTGGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2846	FBgn0014930	FBtr0081763	1	1	1	95	3R	3738577	3738659	TCCCAACAGCTAACTTTCC		59	3738500	3738518	GTCCATTATCCACGTTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17917	FBgn0037431	FBtr0081709	3	1	1	83	3R	2167854	2168073	TAATGTTACTTACCACGGGC		59	2168119	2168137	TTTACGGAGGGTTCATCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113339,FBtr0078898,FBtr0078902,FBtr0113341,FBtr0078899,FBtr0078901,FBtr0113340,FBtr0078897,FBtr0078900,FBtr0113338	1	10	15	217	3R	110087	110105	TAGCTAAGCAGATGGTTGG		59	120999	121298	GATGTTGTACTTATCGCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CR32477	FBgn0052477	FBtr0072500	1	1	1	80	3L	227382	227403	CACATCTCATCTATAGCTTCTG		57	227444	227520	CGTCATTTCTCAAACGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10587	FBgn0037039	FBtr0078333	1	1	1	82	3L	20955088	20955106	GAAACTATTGCGTACGGTG		58	20954871	20955042	CTGTTAAATGAACCGTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3947	FBgn0037019	FBtr0078278	1	1	1	60	3L	20771082	20771163	GGGTATCCTACTTTATAGCAGG		59	20771043	20771061	TATACCAGCTCACTGACCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33710	FBgn0053710	FBtr0091698	3	1	1	121	3L	19945657	19945676	ACGTGCATATAAGTACAGGA		58	19945490	19945574	CCCATTGATAACGTAATCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11905	FBgn0036678	FBtr0113175	2	1	10	95	3L	16926458	16928310	AAATGCGCTTTCTTGTTCTC		59	16926160	16926400	AGTTAGCTTCTAGTTGGGC		58	NA	InUTR
Drosophila melanogaster	50	ome	FBgn0002997	FBtr0112816,FBtr0075688	3	2	2	80	3L	14737472	14737490	GGTCAACTATATGCCAAGC		58	14737534	14737639	CATGATGGACGTATTCTCC		57	NA	
Drosophila melanogaster	50	CG11261	FBgn0036332	FBtr0075899	1	1	1	64	3L	13003070	13003088	TTTACGGAGCAGGAATTGG		59	13002952	13003042	TTTAATGCCTCTTGGAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17144	FBgn0036267	FBtr0076015	3	1	1	73	3L	12201017	12202407	CGTAATTCCAATAGTCTAGCTC		58	12200965	12200983	GTATAAGCCGGAATGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6084	FBgn0086254	FBtr0076139,FBtr0076138	1	2	2	92	3L	11614648	11614666	ACAATCACTGCCTACAGTC		59	11614514	11614592	TTCCTTGATCTTAGCCTCC		58	NA	
Drosophila melanogaster	50	Hsp67Bb	FBgn0001228	FBtr0100653,FBtr0100655	3	2	2	88	3L	9366346	9366364	CAATCATATTCACCTGCCG		58	9366416	9366502	GTAGATCACCACATTGCTG		58	NA	Nonspecific
Drosophila melanogaster	50	Fhos	FBgn0052030	FBtr0076577,FBtr0076578	3	2	2	82	3L	8779324	8779410	GAAGAAACCTCGTGATGGT		59	8779456	8779474	TCAGAAAGCTCTTATGCCG		59	NA	
Drosophila melanogaster	50	Cp16	FBgn0000356	FBtr0076574	1	1	1	130	3L	8725299	8725317	ATTCCCTCAACCGTTATGG		59	8725411	8725563	CTTGAAGACTGGATCGACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6416	FBgn0035917	FBtr0089564,FBtr0089566,FBtr0089565,FBtr0089562	1	4	8	85	3L	8623725	8627690	TTCAATACCAACCCTACCG		58	8627739	8627757	CAAGTAGGACTCTGTCGTG		59	NA	
Drosophila melanogaster	50	eIF4E-5	FBgn0035823	FBtr0076747	1	1	1	70	3L	7888694	7888714	GGAGCTGTCATCAATATACGT		59	7888799	7888817	ATTTCGTTACTCCCGTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7506	FBgn0035805	FBtr0076822	3	1	1	158	3L	7634113	7634189	CAAGACTACTTTCCGACCA		58	7633973	7633991	AAATCGATCGGTTTGTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17150	FBgn0035581	FBtr0073351,FBtr0073349	2	2	3	81	3L	4888910	4889142	CTATTTCACGACGGAGTACC		59	4889186	4889204	TTCACTACTCGGAATGTGC		59	NA	
Drosophila melanogaster	50	CG13721	FBgn0035554	FBtr0073328	1	1	1	60	3L	4497426	4497445	GGATATTGGCCACATTACAG		58	4497255	4497406	AACCTCCATAGTATGGATAACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pxn	FBgn0011828	FBtr0072950,FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951	1	5	5	146	3L	2611834	2611853	GAACAATAATCGGCTAAGCC		59	2611549	2611649	TACATGATCAGGCGATTCAG		59	NA	
Drosophila melanogaster	50	CG16984	FBgn0062517	FBtr0072928	3	1	1	77	3L	2595971	2596045	AAATCCTGTTGTGGAGAGG		59	2596086	2596104	GATAGCTTCTTGTCCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9018	FBgn0035318	FBtr0072910,FBtr0072909	1	2	2	125	3L	2235960	2236055	ATACAGGTGAACGAAGCTG		59	2235853	2235871	GAGAAGTTCCTTCTGCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	apt	FBgn0015903	FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067	1	5	5	84	2R	19484451	19484469	TTTATGAAGATTGCCGCCA		59	19484516	19484597	TGTACTGTGTCATTTCCGTC		59	NA	
Drosophila melanogaster	50	CG5482	FBgn0034368	FBtr0086661	1	1	1	102	2R	14518209	14518227	CAAGATTGCCGCTTATGAC		59	14518065	14518145	CTCCAATATTCTTCCTTTGCG		59	NA	
Drosophila melanogaster	50	Ark	FBgn0024252	FBtr0086968,FBtr0086967	1	2	2	91	2R	12909216	12909234	GGATGTACATCGAGCAGAG		59	12909289	12909428	TAGCTTCAGATACGGTTGC		59	NA	
Drosophila melanogaster	50	CG8443	FBgn0034087	FBtr0087242	3	1	1	97	2R	12079642	12079660	TGGGAATGTCTCTTAAGCT		57	12079720	12079801	GATGTTGCTATCGATCAGTG		58	NA	
Drosophila melanogaster	50	CG8315	FBgn0034058	FBtr0087267	1	1	1	200	2R	11879534	11879606	TTACTCCGCTTTGGTAAGTG		59	11879353	11879371	CTTATTGGCGATGTTGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10131	FBgn0033949	FBtr0087499	3	1	1	148	2R	10517826	10517901	AGAGACAACAGATGCTAGTG		59	10518012	10518030	TAAAGTTACCGGACGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6553	FBgn0033880	FBtr0087642	3	1	1	62	2R	9742519	9742537	GAGAACCAGAACATTTGCC		59	9742419	9742493	GGGTGTTTCACAGTAAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8830	FBgn0033738	FBtr0087950	3	1	2	240	2R	8322186	8322204	GATTGGATCACGTACTGCA		59	8321899	8321982	TCCTTGGCAAGATCTTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13215	FBgn0033592	FBtr0088192	1	1	1	60	2R	7127462	7127480	GTTTAAGCCTGATCCAAGC		58	7127420	7127439	GAAACGAATCCTGGATTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pfk	FBgn0003071	FBtr0088420	1	1	3	166	2R	5997999	5998018	TGTTTAAGAACCATGCAGGA		59	5999073	6000132	ATGAAGTAGACCTTGCAGC		59	NA	
Drosophila melanogaster	50	CG12744	FBgn0033459	FBtr0088377,FBtr0088378	2	2	2	132	2R	5763337	5763355	GAGAAGTCCTTAGATTGGC		57	5763451	5763525	GATTCGGATTGAAGAAGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8172	FBgn0033362	FBtr0113058	3	1	3	221	2R	4898915	4900535	ATGAGCTGGACTTGATACC		58	4895971	4895989	GATTGGATCGGGTGTAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11060	FBgn0033149	FBtr0089045	1	1	1	60	2R	3064558	3064577	TGCAATGTGAACCATATGAG		58	3064598	3064711	GGACTTAGATTCTGAATGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30157	FBgn0050157	FBtr0086186	2	1	1	144	2R	2862195	2862213	CTACTTCCACTACGGATGC		59	2862069	2862087	CAGGATCTGCTGAATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CheB42a	FBgn0053348	FBtr0086168	3	1	1	215	2R	2837258	2837328	GGTATTTGGTCAAGTCTATCG		58	2837564	2837583	TTCAAGTCCAGTTCGTAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG40133	FBgn0058133	FBtr0111297	3	1	1	67	2R	38748	46847	ATCTGCTAGCAACAAGGAG		59	46878	46896	GATCAGTATGCTTGAGTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His1:CG33852	FBgn0053852	FBtr0091856	1	1	1	69	2L	21517106	21517124	AATTTAAAGGAACGTGGCG		59	21517156	21517175	CGCATTTATAAGTGGCAGTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17472	FBgn0032868	FBtr0081382	3	1	1	161	2L	20634603	20634694	CTTTGCCCTTAGTAGTAAGGA		58	20634817	20634835	ACTTCAAGGTTACTTCGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Orc5	FBgn0015271	FBtr0080543	1	1	1	60	2L	13831263	13831282	ATTCTAGAGGAGAAAGTCGG		58	13831305	13831323	GCACCAAAGTTGAGATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17024	FBgn0032437	FBtr0080371	1	1	1	63	2L	12454483	12454585	GTGGTAATCCTATGTGTTCTG		58	12454610	12454628	ATGTCCGGAGAATTTGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cbt	FBgn0043364	FBtr0078083	1	1	2	193	2L	478201	479421	AACAAGTTGGAAATCGTCG		58	478026	478044	CTCATAGCAGGTTGTTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	smo	FBgn0003444	FBtr0078129	1	1	1	74	2L	279068	279086	GTATCCGGCAGTAATTGTG		58	279124	279202	GTAAACTGAAGCAACCAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	tRNA:V3b:92Ba	FBgn0012003	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:CR31356	FBgn0051356	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CycD	FBgn0010315	FBtr0074164,FBtr0074165	2	2	3	152	X	15802347	15802584	GAATGGATGATGGAAGTGTG		58	15802214	15802232	CTTTGAAGCCAGTAAGAGG		57	NA	
Drosophila melanogaster	50	CG9053	FBgn0030606	FBtr0073969,FBtr0073968	1	2	2	60	X	14960238	14960256	CCTACGACAAGGAGATGAC		59	14960196	14960214	GAGTGGTATAGGCACTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ran	FBgn0020255	FBtr0073471,FBtr0073472	2	2	2	85	X	11040050	11040068	ATACCAATCGTCCTCTGTG		58	11039983	11040002	TTCTTCTTTCGGTGGAAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34449	FBgn0085478	FBtr0112753	2	1	3	83	X	9227647	9230968	TTTACAGTAAGCTATCGCCC		59	9227583	9227601	GTTCACAGTCCTGACTCTG		59	NA	
Drosophila melanogaster	50	rst	FBgn0003285	FBtr0070562	2	1	1	109	X	2849668	2849990	GACAGAGATGGTGATACGC		59	2849577	2849595	TTATGTCAAGGGTTTCGCT		59	NA	
Drosophila melanogaster	50	CG41521	FBgn0085666	FBtr0114113	2	1	1	64	U	2919166	2919185	GACAACCAAGGTTCATTTGG		59	2919211	2919230	GAATTGGACATTATAGCCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40313	FBgn0058313	FBtr0113862,FBtr0113861	2	2	2	61	U	1924328	1924347	CTATTCCAGCCGAAGTATGG		59	1924286	1924304	AGTCGAATACATGAGCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CaMKII	FBgn0004624	FBtr0089217,FBtr0089218,FBtr0100148,FBtr0089219,FBtr0100146,FBtr0100147	2	6	6	80	4	1068498	1068517	CAGGATATCTGTCTCCTGAG		58	1068344	1068456	AAAGAATAACTCCACATGCC		58	NA	
Drosophila melanogaster	50	CaMKI	FBgn0016126	FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065	1	6	7	94	4	467853	470559	TTTGAGAAGGTTCAGTGCA		59	470887	470908	CATACGTTTCTAAGAGTTGCAC		59	NA	
Drosophila melanogaster	50	CG1674	FBgn0039897	FBtr0089118,FBtr0089119,FBtr0089117	3	3	4	83	4	254903	254921	CCAACATCCATTGCATCTG		59	254968	257035	TTGGTCATTGACATTCGGT		59	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	2	7	7	83	4	208987	209060	CGGATCATAGACTTACGGA		57	208922	208940	CGAAGCATGGTTTAGTCAG		58	NA	
Drosophila melanogaster	50	bxd	FBgn0020556	FBtr0083341	2	1	4	73	3R	12579400	12579418	AAATTCAGAACGCGTTGAG		59	12568459	12568477	GAATTATGACCGGAATCGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	Gfat2	FBgn0039580	FBtr0085297	1	1	1	62	3R	24164219	24164237	CAGGATGAGGTTCGATACG		59	24164175	24164193	ATCTCCGGTATGTACTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pi3K92E	FBgn0015279	FBtr0083940,FBtr0083941	1	2	2	83	3R	16457025	16457246	GCTTACACTTTCTGAAAGACG		59	16456962	16456980	TTTCCAGGTACGATTCGTG		59	NA	
Drosophila melanogaster	50	pyd	FBgn0003177	FBtr0089783,FBtr0089784,FBtr0112822	2	3	8	81	3R	4660660	4664121	AGTCTAAGGTACCCTACGAC		59	4660598	4660616	TAGATGCTGTACTTGCTGG		59	NA	
Drosophila melanogaster	50	CG1091	FBgn0037470	FBtr0081640,FBtr0081641	3	2	2	86	3R	2909299	2909420	GCATGCTAGGTATTCAGCA		59	2909231	2909249	TGTATGGGATCCTGTACCA		59	NA	
Drosophila melanogaster	50	sec23	FBgn0037357	FBtr0078710,FBtr0078711	2	2	2	104	3R	1476887	1476905	GATCGTCAGTTGATTCGTC		58	1477041	1477059	CATGAATTGCGGGAATAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	tacc	FBgn0026620	FBtr0089955,FBtr0089953,FBtr0089952,FBtr0089954	3	4	7	83	3R	570242	570260	CAAAGTTTGGAGGTCTTCC		58	569896	570197	TCAGTTGAGTATCCATATCGG		58	NA	
Drosophila melanogaster	50	CG33056	FBgn0053056	FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311	3	5	5	132	3L	21191820	21191990	GGAACATATGAGGGAGCAC		59	21191706	21191726	AATTATGTCCACGCTATCCTC		59	NA	
Drosophila melanogaster	50	CG6680	FBgn0036968	FBtr0074842,FBtr0074841	2	2	2	165	3L	20311902	20311979	CTCATTTCTGAACATCACCAC		59	20312106	20312124	GATCTGGATCACCGAATCC		59	NA	
Drosophila melanogaster	50	CG13698	FBgn0036773	FBtr0075137	2	1	1	60	3L	18083548	18083568	GTTACTACGATAGTCCATCGG		59	18083447	18083466	TTAAACGGTCCGAAATAACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11905	FBgn0036678	FBtr0075304,FBtr0075301,FBtr0113173	1	3	10	208	3L	16926458	16928309	AATGCGCTTTCTTGTTCTC		59	16923957	16923975	GTTGATAGGCTCCATAGGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	lark	FBgn0011640	FBtr0076842,FBtr0076843,FBtr0076841,FBtr0076844	1	4	5	98	3L	7333781	7333799	TACAGAGATCGCATGTACG		58	7333861	7333984	GTCATAGTCCCTAAAGCCA		58	NA	
Drosophila melanogaster	50	CG14995	FBgn0035497	FBtr0073274,FBtr0073273	2	2	4	184	3L	4097664	4097682	TCTACGAGGATGCATACCA		59	4095866	4097518	GTAGTATTCCTCTTTCGTGGG		59	NA	
Drosophila melanogaster	50	Pxn	FBgn0011828	FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951	1	4	5	110	3L	2607768	2607786	TCAAGAATGTGACCATCCC		59	2604263	2607695	CCAAATCCACGTTGTTTCTG		59	NA	
Drosophila melanogaster	50	CG16758	FBgn0035348	FBtr0072966,FBtr0072964,FBtr0072963,FBtr0072965	1	4	4	126	3L	2499617	2499702	AACCACGATGAGGTTATGG		59	2499509	2499527	ATCCAACGCTACTTCTTCG		59	NA	InUTR
Drosophila melanogaster	50	CG12038	FBgn0035179	FBtr0072619,FBtr0072620	1	2	2	168	3L	994904	994981	TAATGCAGTATCTGGCCTC		58	995113	995131	GCACTCTGGTACTTCAGTC		59	NA	
Drosophila melanogaster	50	eIF-5A	FBgn0034967	FBtr0072172,FBtr0072173	2	2	2	65	2R	19946637	19946656	ATAGTGGCAAGGACTTACTG		59	19946746	19946764	TAATTGCGATAACGCACTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Or59a	FBgn0026384	FBtr0072023	1	1	1	60	2R	19328003	19328022	AAACTATGTTAGCGACTGCT		59	19327962	19327982	TTTGATGTGGGATGAGATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11055	FBgn0034491	FBtr0086271,FBtr0086270,FBtr0086272	1	3	3	141	2R	16148062	16148142	CTTACACTTAACATGGACCC		57	16148245	16148324	CTTCGTTGGATAACATTGTG		57	NA	
Drosophila melanogaster	50	Obp56a	FBgn0034468	FBtr0086476	2	1	1	77	2R	15585641	15585659	TGAAACTTACCGAGGAGGA		59	15585699	15585718	CAAAGCACTTGATGTTCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sli	FBgn0003425	FBtr0087303,FBtr0112832	1	2	5	81	2R	11773649	11773668	ACTGACAATCAGATCCACAC		59	11773145	11773607	GATTGTTGTTTAGGCGTAGTC		59	NA	
Drosophila melanogaster	50	skf	FBgn0050021	FBtr0114569,FBtr0114570,FBtr0088196	3	3	3	64	2R	7117475	7117493	TGTGACATGCTAGAAGCAG		59	7117366	7117447	ATCAGCTTGGAAAGAGCAG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG2264	FBgn0033478	FBtr0088400,FBtr0088399,FBtr0088401,FBtr0088402	2	4	5	153	2R	5948857	5949128	GAGTTTCACAACCGTAGTG		58	5949244	5949263	AGTGTGGATTAACTCCAGTG		59	NA	
Drosophila melanogaster	50	Spn43Ab	FBgn0024293	FBtr0100356,FBtr0089054	1	2	2	87	2R	3039482	3039502	CATTTCATTAACGCAGTGGAG		59	3039349	3039436	CTTTAAGCAATCCAGTTTCCAG		59	NA	
Drosophila melanogaster	50	CG17082	FBgn0039994	FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289	2	6	6	90	2R	644086	644172	TCTATTGGTCGATCAAAGGAG		59	644224	644242	CATTCTCTGAGGCTGACAG		59	NA	
Drosophila melanogaster	50	cact	FBgn0000250	FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847	2	4	4	182	2L	16323076	16323094	CCTTGACAGAGAAGTTCGG		59	16314811	16314829	AGATATCAATGTGACCCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	prd	FBgn0003145	FBtr0080299,FBtr0080298	2	2	2	60	2L	12084916	12084934	CTGCGTATCGAAGATCCTG		59	12084874	12084893	AATTACGCCTGGTCTAATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ca-beta	FBgn0015608	FBtr0080217,FBtr0080220,FBtr0080219	1	3	4	82	2L	11163274	11163295	CGGATATGTTCGATGTAATCCT		59	11163090	11163233	CCAATACGTCTCCAAGTACTC		59	NA	
Drosophila melanogaster	50	CG13138	FBgn0032211	FBtr0080066,FBtr0080067	1	2	2	60	2L	10301076	10301094	GTACCGAAACCGTATCCAG		59	10301034	10301052	CTGGCACCTTTATTTCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4502	FBgn0031896	FBtr0079417,FBtr0079416	2	2	2	169	2L	7196232	7196327	ACGACAAGATCACAAGGTG		59	7196022	7196043	ACTCGAATAGACTATCGTTGAC		59	NA	
Drosophila melanogaster	50	CG2837	FBgn0031646	FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403	3	4	4	165	2L	4904903	4904924	AGTTTACTCCAATATACCACCG		59	4904700	4904721	CTTGTTGAACGATTGATCATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	p16-ARC	FBgn0031437	FBtr0077694	1	1	1	100	2L	2580478	2580496	ATGAGAGCGAGATTACGAC		58	2580560	2580578	CACATTCTGGTTCTTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40486	FBgn0069972	FBtr0111188	3	1	2	96	X	22361301	22361319	CAACATGTATCCGCTTACC		58	22360947	22361244	GCTTGTGACCTTTATCTTAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33491	FBgn0053491	FBtr0089603	2	1	1	70	X	20073412	20073516	TGATGGCCATAGTTGAGTG		59	20073360	20073378	ATTCATGGCCTTGTACAGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15719	FBgn0030440	FBtr0073751	3	1	1	60	X	12898406	12898613	CATAGCTTGTCCTGTAGAGAC		59	12898366	12898386	GTAAACCGTGAGAAAGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14798	FBgn0029588	FBtr0089693,FBtr0089694	2	2	2	286	X	1587078	1587096	AAATCGAGCCTCACATCAG		59	1587472	1587490	AAAGTCATGGGATCCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32016	FBgn0052016	FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232	3	6	6	146	4	974515	974656	CTACTCTCAAGAATTGCATTCG		59	974390	974408	CTTGGTGATTGCGTATCCT		59	NA	
Drosophila melanogaster	50	CG15529	FBgn0039748	FBtr0085567	3	1	1	147	3R	25977971	25977989	CCTGATGGAAGTCAGATCG		59	25978100	25978366	GTCCACAATGACGTAATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7549	FBgn0037559	FBtr0081825,FBtr0081826,FBtr0110951	2	3	3	86	3R	4085351	4085369	CACCTACAAGCTTCTCCTG		59	4085418	4085508	ATACGTGGAATACCATGCAG		59	NA	
Drosophila melanogaster	50	Osi1	FBgn0037406	FBtr0078588	2	1	1	152	3R	1999731	1999749	TGTTCAACGACGCTAAGAG		59	2000066	2000145	CTTCCGATTCCTCCATGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9809	FBgn0037248	FBtr0078946,FBtr0078945,FBtr0078947	2	3	3	101	3R	251619	251638	ATGAATTACGCTATGTGGAC		57	251471	251555	GTTGTTCCGGCTTATTCTC		58	NA	
Drosophila melanogaster	50	CG33766	FBgn0053766	FBtr0091767	2	1	1	69	3L	22638773	22638865	TAATCGTGCCAATACCTACG		59	22638897	22638915	TAGCTGCGATTAAAGTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15609	FBgn0034180	FBtr0114626,FBtr0114629,FBtr0087019,FBtr0114627,FBtr0114628,FBtr0114625	2	6	6	91	2R	12899519	12899537	TAAGGTTACCAACCTGACG		58	12899311	12899465	TAGACATGTCAATGAGCTCC		59	NA	
Drosophila melanogaster	50	CG17266	FBgn0033089	FBtr0086144	2	1	1	87	2R	2563161	2563180	CAAATACAGTCCCAACTGAG		58	2563027	2563112	ATATCATTCGTCCGATTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Me18S-A627	FBgn0086045	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-276b	FBgn0067716	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	DIP1	FBgn0024807	FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370	1	4	4	170	X	21497272	21497350	TTCTTTGCATTATGCGTCC		58	21497120	21497138	GAGAGTTGCACACTTTCAC		58	NA	Nonspecific
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089403,FBtr0089404	1	2	13	72	X	20105893	20105911	AAGAGACACTGGTCTACAC		58	20103229	20105857	TTGTATTCATCATCGCCGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Sdic4	FBgn0053499	FBtr0089612	3	1	1	101	X	20092414	20092432	ATATCCACGCACTACAACC		59	20092264	20092349	CTTTGTGTCCTTTAGCGAC		58	NA	Nonspecific
Drosophila melanogaster	50	Sdic3	FBgn0052823	FBtr0089465	1	1	1	115	X	20087949	20087967	TAAGCGTCTACAATGTGCA		59	20085962	20087870	ATCAAATGCAAGCACATCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG11943	FBgn0031078	FBtr0074798,FBtr0074799	1	2	2	80	X	19747833	19747915	GGATCTGGTCTATAGCACG		59	19747959	19747977	TTGGAGTTCATGAAGTCGA		58	NA	
Drosophila melanogaster	50	skpC	FBgn0026175	FBtr0074797	1	1	1	60	X	19710475	19710493	TGTTCGAAATCATACTGGC		57	19710517	19710535	CAACAGAGATCCACTAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pfrx	FBgn0027621	FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720	1	8	8	60	X	19401733	19401752	GTCGTCTACAATAACGAGGG		59	19401772	19401793	GGATGTTCATCAGGTAGTAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8010	FBgn0031008	FBtr0074688	1	1	1	143	X	19161473	19161491	ATACAACGACTTCGAGGAG		58	19161282	19161366	TGCCTGTAATACTTCTCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7556	FBgn0030990	FBtr0074697	3	1	1	102	X	19072116	19072134	ATTCGCAGATTCAGACTCG		59	19071955	19071973	GTAAGATCCTCGTCAGTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6290	FBgn0030921	FBtr0074563	2	1	1	65	X	18331607	18331625	CACAGAATCCGCTAGAGTC		59	18331654	18331672	CTGCCTCCGCTATATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32548	FBgn0052548	FBtr0074569,FBtr0074568	3	2	2	85	X	18330497	18330515	CCTTCCTCGATTATCAGCG		59	18330430	18330450	ATCGGGATAGTAGTGGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8915	FBgn0030833	FBtr0074447	2	1	1	96	X	17138025	17138044	ATAGCAGCTATCAGTGTCTC		58	17137887	17137966	TGCATTGTCTATTCATGCG		58	NA	
Drosophila melanogaster	50	mei-218	FBgn0002709	FBtr0100640,FBtr0100639	3	2	2	89	X	17033337	17033420	TCTAGATTGAGCCAAAGACG		59	17033267	17033285	AGGATTTGGTAGTTGCTCG		59	NA	Nonspecific
Drosophila melanogaster	50	CG4949	FBgn0030813	FBtr0074380,FBtr0074381	2	2	2	129	X	16973405	16973424	CATCCTTTGTGAATTACCGC		59	16973516	16973534	ATAAGCAGCTTGAACTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Stim	FBgn0045073	FBtr0074161,FBtr0074160,FBtr0074159	3	3	3	81	X	15829503	15829521	AGAATGTTCTGTACGGTCG		59	15829366	15829460	GTAATACGTGCTCTAGAACCC		59	NA	
Drosophila melanogaster	50	AlkB	FBgn0065035	FBtr0074168	2	1	1	89	X	15752680	15752699	GTAGTACGTTATCGGGTCAC		59	15752548	15752567	GAAATATTGCAGTCTGACCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	1	7	7	80	X	15717652	15717670	TATCACCGGCATCTATTCG		59	15717712	15717802	TTGCCGTATATCAACAGTCTC		59	NA	
Drosophila melanogaster	50	eag	FBgn0000535	FBtr0111009,FBtr0073955	3	2	2	90	X	14880354	14880372	TCGTCTACTGCAATGAGTC		59	14880426	14884364	ATGAAGCCGCATACATACC		59	NA	
Drosophila melanogaster	50	CG14408	FBgn0030581	FBtr0073991,FBtr0073990	3	2	4	109	X	14722054	14723176	TTCAGCAGATCTTCAGAGC		59	14721963	14721984	TTGAGTTCCTCCACTATAATGG		59	NA	
Drosophila melanogaster	50	CG5321	FBgn0030575	FBtr0073934	1	1	1	60	X	14574473	14574491	TCGCATAGTAGTCGATTGG		58	14574515	14574533	AATGTTGTGGAACTCTCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL38	FBgn0030552	FBtr0073902	3	1	1	111	X	14121426	14121444	GACTTCTATCGTCAGCACC		59	14121516	14121607	CTTTGATCTTCAAGACATCGTG		59	NA	
Drosophila melanogaster	50	CG11158	FBgn0030511	FBtr0073812	1	1	1	62	X	13577484	13577502	GACCACTTACCAACTTTGC		58	13577527	13577546	CAATGTTCGTCAGAAATGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	up	FBgn0004169	FBtr0073851,FBtr0100563,FBtr0073852	3	3	6	127	X	13493488	13494115	ATGAAGAGTACACCAGCTC		58	13490712	13490730	TTTCAGCTGATCATCGAGG		59	NA	
Drosophila melanogaster	50	CG3775	FBgn0030425	FBtr0073690	1	1	1	60	X	12696711	12696732	TACATGATGACGATAAACTGGG		59	12696753	12696771	AGTTTCCTCAACTGTTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12643	FBgn0040942	FBtr0071481	2	1	1	95	X	10159006	10159024	GAATCCATTCGATTCCGTC		58	10158929	10158948	CAATAGCGATAGGATACCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12645	FBgn0030181	FBtr0112973,FBtr0071433	1	2	2	60	X	10047787	10047806	TGGATTATTCCAACGATCGG		59	10047829	10047847	CTGGACCTTAGATGTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33557	FBgn0053557	FBtr0091534	1	1	1	83	X	9903660	9903678	GCAAGCTTTCAAAGATCGA		58	9903724	9903800	ATTCAGTGCCTGTTTCTAGG		59	NA	
Drosophila melanogaster	50	CG1986	FBgn0030162	FBtr0071395	1	1	1	121	X	9804602	9804620	GAGACCTTCGAGGATTTCG		59	9804441	9804518	GAATAGGGTCCAAGTTAGCA		59	NA	
Drosophila melanogaster	50	Gga	FBgn0030141	FBtr0071363	3	1	1	138	X	9495408	9495426	ATCCACAAATGTGACGGAG		59	9496196	9496215	GTACTTCTTCGATACCAGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Dsor1	FBgn0010269	FBtr0071313	1	1	1	67	X	9143683	9143701	CATCTGCCTGAAGAAACAG		58	9143732	9143821	GTATCCACGGATGACTCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Ubc-E2H	FBgn0029996	FBtr0071114,FBtr0071112,FBtr0071113	1	3	3	62	X	7983587	7983605	GCGTTGTACGATCTATCGA		59	7983543	7983561	ATTGGGATATGTGAGCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18624	FBgn0029971	FBtr0071140,FBtr0071141	2	2	2	125	X	7787312	7787330	GTCTTGGGACTGGATAAGC		59	7787205	7787223	GTATAGGGCACTCTTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tom40	FBgn0016041	FBtr0071074	3	1	2	122	X	7631708	7631915	AGTGCAAAGATATCCAGGC		59	7632001	7632019	GATATCCACTGGGTACCAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	1	8	8	166	X	6579447	6579465	ACAACGTCTTCCACTACAG		59	6579594	6579676	TGGAGAAGTCACATTGAAGG		59	NA	
Drosophila melanogaster	50	CG3774	FBgn0029849	FBtr0070874,FBtr0070875	3	2	2	60	X	6116022	6116041	TCTTTACGCACATGTTACCT		59	6116064	6116082	TGTTGGACTATATTGCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11462	FBgn0029815	FBtr0070831	3	1	1	166	X	5734697	5734715	GTTGCTCTCAGAAGTACCT		58	5734549	5734569	CGAGCACACTTAAGATTAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lin-52	FBgn0029800	FBtr0070840	3	1	1	106	X	5648378	5648477	GATTAATGAACTAGCCCAGC		58	5648291	5648309	GAGTCATCTCCATTGCCTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG12680	FBgn0029740	FBtr0070726	3	1	1	60	X	4891718	4891739	GGAGGATATTCATGTGTTTGAG		58	4891760	4891778	GGTAAATGCCATTAGTGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2875	FBgn0029672	FBtr0070586,FBtr0070587	3	2	2	67	X	3466638	3466656	CTTTCTCATGGACTCCCTC		59	3466527	3466546	TAAAGATTCCCTGAAGAGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32793	FBgn0052793	FBtr0070550	2	1	1	63	X	2824769	2824787	TAACCGCTTCAATAACCGA		58	2824814	2824832	CTGGAAGTAATCGTCCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sgg	FBgn0003371	FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470	2	13	13	80	X	2567069	2567087	CATGGAGGGTAATCACACC		59	2567130	2567220	TGTATTGAGAGCTCATGCTC		59	NA	
Drosophila melanogaster	50	CG32803	FBgn0052803	FBtr0070356	3	1	2	100	X	1795541	1795559	TAAAGATACATGGCCCAGG		58	1795300	1795477	GATTTGAAGCCATGACCTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG14815	FBgn0023516	FBtr0070368,FBtr0070367	3	2	2	60	X	1761161	1761180	CCTTTAGAGGACAGAACCAG		59	1761120	1761138	GAAATGACCATCTTCAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14799	FBgn0029591	FBtr0070303	3	1	1	76	X	1719899	1719917	TTACAACTCCAGTTCACGA		58	1719957	1719975	TGGGTATTGTGGTCATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sta	FBgn0003517	FBtr0070289,FBtr0070290	1	2	3	224	X	1376898	1376918	GGAGGCTTAGATATTCTGTCC		59	1376502	1376712	GATGACGAAGATGTCCGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG32808	FBgn0052808	FBtr0070295	1	1	1	63	X	1363084	1363102	GAAGGTCAAACTGCAAGTG		59	1363039	1363057	GTGCAGATAGGTCTGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	O-fut2	FBgn0027791	FBtr0070296	3	1	1	61	X	1359770	1359790	CTTTACGACGTAAACATCTCC		58	1359729	1359747	GCCATGCGAATATAGACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14634	FBgn0040892	FBtr0110804	2	1	1	75	X	757029	757047	ATAGTCACGTCTAGCACCT		59	757086	757104	AGTAATCCTCGATGGAGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sdk	FBgn0021764	FBtr0070132,FBtr0070131,FBtr0070133,FBtr0070130	1	4	4	126	X	622650	622668	AGTTCTACCGATTCCACAG		58	622758	624284	TCAAAGATGCCCATGTAGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG17896	FBgn0023537	FBtr0070093,FBtr0070092	2	2	2	60	X	385921	385940	CAGGCAAGTACATTTACGAG		58	385880	385898	CCCATATTAGATTGCACCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32817	FBgn0052817	FBtr0070077	2	1	1	91	X	373964	374066	CTGCGTGACTTTATTTGGT		58	374121	374139	ATTGTTTGATGCCCTAGCT		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Or1a	FBgn0029521	FBtr0070070	3	1	1	113	X	210301	210319	AACCTTCCTCCTAAACACC		58	210393	210524	TATCCAAACAAGAAGAGGTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG41542	FBgn0085679	FBtr0114128	2	1	1	60	U	9484845	9484866	CAGACGACTACGATATAATGGA		58	9484887	9484905	TGACGTAAACGTACTTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40950	FBgn0085543	FBtr0113956	1	1	1	131	U	8200821	8200842	TGATAAGTGGATAGTGGATCAG		58	8200361	8200382	CTGCCCAACTTAGTATAAACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40267	FBgn0058267	FBtr0113852	3	1	2	103	U	367323	367342	GCAGTACCGGAATATTAACC		58	326550	367257	AAATAGATGAGACCGAGGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG11155	FBgn0039927	FBtr0089193,FBtr0089195,FBtr0089194	3	3	3	115	4	1147554	1147632	AGTAATACGAGTAGGTGCC		58	1147710	1147729	GTGTATTGGGAAGAAGAGTC		57	NA	
Drosophila melanogaster	50	CG11155	FBgn0039927	FBtr0089193,FBtr0089195,FBtr0089194	1	3	3	114	4	1147555	1147633	GTAATACGAGTAGGTGCCA		58	1147710	1147729	GTGTATTGGGAAGAAGAGTC		57	NA	
Drosophila melanogaster	50	MED26	FBgn0039923	FBtr0089253,FBtr0089254	2	2	2	81	4	803971	803990	CGTCAACAAATCGAGATCTG		59	803853	803930	GGAGAATTCATTGAAGTGTCTG		59	NA	
Drosophila melanogaster	50	bip2	FBgn0026262	FBtr0089110	3	1	1	82	4	483732	483753	TTCATAGATTATCCTGGACCAG		58	483118	483691	GAATCAGTAACAGGAGAATCC		57	NA	
Drosophila melanogaster	50	CG34036	FBgn0054036	FBtr0100091	2	1	1	189	4	352110	352128	GTTATGCTTCTCAAAGCGC		59	350039	350900	CGTTTACCACTCGTATAGCT		59	NA	InUTR
Drosophila melanogaster	50	CG2177	FBgn0039902	FBtr0114519,FBtr0089132,FBtr0089133	1	3	3	78	4	333993	334011	AACTCTTGGATTGGTTGTG		57	333875	333893	AACGTCTTGATGGCTAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1674	FBgn0039897	FBtr0089116,FBtr0089117	3	2	4	143	4	264202	264268	CAATACAAATGCCGTTGCT		59	264374	265824	TCTTTCGGAACGTATAAGCC		59	NA	
Drosophila melanogaster	50	snoRNA:Me18S-G423	FBgn0086052	FBtr0114328	1	1	1	60	3R	3901383	3901401	CAAATTATGTGTCGGCGTG		59	3901423	3901443	CATATAAGGAAGGCAGTAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or98P	FBgn0067407	FBtr0085225	1	1	1	60	3R	23670832	23670852	AAACCTATTGCTCAGGATCTC		59	23670874	23670892	TGCCATACTCAAAGTAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2118	FBgn0039877	FBtr0085855,FBtr0085856	3	2	2	97	3R	27617448	27617522	TGAGAAGGTCTATTCTGTGG		58	27617370	27617388	GAACTCTTTCGACCTTTGC		59	NA	
Drosophila melanogaster	50	CG1910	FBgn0022349	FBtr0085839,FBtr0085840,FBtr0085838,FBtr0085841	3	4	4	64	3R	27575212	27575230	AGGAGAAGGTACAGACCTC		59	27575317	27575335	CTTGACCTCTTTCTTGTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	kek6	FBgn0039862	FBtr0085821	1	1	1	60	3R	27485357	27485377	CTCCTACATTGATCCCATGTC		59	27485398	27485417	CTTTAGGTTGAGGAACTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CecB	FBgn0000278	FBtr0085640	2	1	1	230	3R	26039424	26039445	GAACTTCAACAAGATCTTCGTC		59	26039157	26039175	ATAAGAGAAATGAGCGGGT		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7943	FBgn0039741	FBtr0085560,FBtr0085559	2	2	2	208	3R	25873516	25873534	TTTCGTACTGCGAGAAGAG		59	25873772	25873791	CTACGTAAATTCGCTTGCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	janA	FBgn0001280	FBtr0085595,FBtr0085597,FBtr0085596	1	3	3	84	3R	25864787	25864805	GAAGGTCTACGGATACTCG		58	25864615	25864633	GTAGTCCGGGTATTTGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cad99C	FBgn0039709	FBtr0085488	2	1	1	88	3R	25678956	25678976	TCACTCTGATTGCCATATCAC		59	25679023	25679113	GTTCTTGTACTTTGACCAAGAG		59	NA	
Drosophila melanogaster	50	CG7598	FBgn0039689	FBtr0085473	1	1	1	60	3R	25563427	25563447	GACATCTACCACTATGTTCTG		57	25563469	25563487	GAATCTTCGCTATCTGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7582	FBgn0039681	FBtr0085464	3	1	1	180	3R	25506778	25506858	TCAAGAAGGAATACCGTCG		59	25506616	25506634	AAGAGCAGTCCAATGAACC		59	NA	
Drosophila melanogaster	50	Slbp	FBgn0041186	FBtr0085409	1	1	1	60	3R	24978025	24978043	TCCACATCTATGATCCACC		58	24977983	24978001	GAGTCGGAATTACTGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Doa	FBgn0053553	FBtr0091524,FBtr0110914	3	2	9	60	3R	24732626	24732644	GCACTAACCTTGGAGTGAG		59	24732666	24732686	TTGATGGTTATCGATCCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12883	FBgn0039538	FBtr0085216	2	1	1	67	3R	23505236	23505254	AGCTGATAAGGTGCTTCTG		59	23505285	23505303	CAGAACATAGATCCTCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mtl	FBgn0039532	FBtr0085191,FBtr0085192,FBtr0085193	1	3	3	140	3R	23464015	23464106	ATCATTCTAGTTGGCACCA		58	23464210	23464228	CTCCATGTATTTCACAGCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG5468	FBgn0039434	FBtr0085029	2	1	1	289	3R	22445556	22445574	CGATATTGGAGATCTGGCC		59	22445827	22445845	TGAAACGAGCGACTTAGAC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Dhap-at	FBgn0040212	FBtr0084897	3	1	1	134	3R	21312823	21312841	GAGTTGTGGAGGTAGAGAC		58	21312649	21312727	CCAAAGGGATCTTTCTTAACG		58	NA	
Drosophila melanogaster	50	CG31288	FBgn0051288	FBtr0084860	2	1	1	72	3R	21124466	21124484	CCTACAAGAAGGCAATGCT		59	21124349	21124430	TTAACAGTGGGAAATGCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG6995	FBgn0039229	FBtr0100424,FBtr0084699,FBtr0084700	2	3	3	153	3R	20647310	20647329	TTTGCACAAGAACAACACAG		59	20647445	20647531	ATAACGCTTGTTACCGAGG		59	NA	InUTR
Drosophila melanogaster	50	CG18410	FBgn0039226	FBtr0084741	3	1	1	97	3R	20624871	20624889	TTGGGATTCAAGGACAAGG		59	20624247	20624265	CCAATCAATCCCTTGATGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG13609	FBgn0039170	FBtr0084560	1	1	1	60	3R	20052972	20052991	AAGGAAACAATTTGGAGTGG		58	20053012	20053032	TCGGTTGATCCAATATCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31133	FBgn0051133	FBtr0084583	1	1	1	60	3R	19974308	19974329	CTAAAGGAGCTAACGAAATCTG		58	19974269	19974287	CATGCTCTTTCAACTCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PyK	FBgn0003178	FBtr0084213,FBtr0084214	3	2	2	128	3R	18198017	18198035	AGAACGGCTTCATCAAGAC		59	18198213	18198231	CATCCAGGTACTTCCTGAG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG31163	FBgn0051163	FBtr0084197,FBtr0110836	1	2	2	91	3R	18107604	18107622	ATTTCAACGTGAACACGAG		58	18110651	18111205	TATACGTATCGTCCATGCG		59	NA	
Drosophila melanogaster	50	bap	FBgn0004862	FBtr0084087	1	1	1	88	3R	17215690	17215708	CCCTGATCAACATCTACCG		59	17215760	17215778	GTAGAAGTACGGGAATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Calx	FBgn0013995	FBtr0083999,FBtr0084000,FBtr0083998	3	3	3	147	3R	16838010	16838030	CCTTTGTGGTATCCATATTCG		58	16838139	16838225	GCGAATGTATCTGGTATGC		58	NA	
Drosophila melanogaster	50	Atpalpha	FBgn0002921	FBtr0089515,FBtr0089514,FBtr0089509,FBtr0089512	2	4	8	90	3R	16786472	16786490	CTTAGAACGAGGGAAACCA		58	16786544	16789461	CATCTTGCGTCTTGATGTG		59	NA	InUTR
Drosophila melanogaster	50	CG17274	FBgn0038835	FBtr0083989	3	1	2	109	3R	16679382	16679608	GGAGTACATGAAGGAATTCCT		59	16679293	16679311	GAAACTTGCGATTCTCCTG		58	NA	
Drosophila melanogaster	50	att-ORFA	FBgn0067783	FBtr0089481,FBtr0089482,FBtr0089480	2	3	3	60	3R	16378772	16378861	TCAAGATCTATCGTGAGGAG		58	16378731	16378749	CAGTTCATGCTAAGTCCCT		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14294	FBgn0038656	FBtr0083726	2	1	1	60	3R	14727708	14727727	ATTTCTACGTCAAGCTGGAG		59	14727667	14727686	GCACTATCCAATACTTCACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31249	FBgn0051249	FBtr0083483	1	1	1	257	3R	13512308	13512326	TTTGCCTCGATTAACACCA		59	13511920	13511938	GAAGGGTTTACCCACTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	mRpS11	FBgn0038474	FBtr0089893,FBtr0089894	1	2	3	105	3R	12898896	12898968	GATCACAAAGGAGTCCTCC		59	12899037	12899055	TAATGGTAACCGCTGTAGC		59	NA	
Drosophila melanogaster	50	Mhcl	FBgn0026059	FBtr0083231	3	1	6	129	3R	11895061	11895595	AACAGCCCGAGAATAACAG		59	11894950	11894972	CTGTTAACTCCATCCTAGTAGAC		59	NA	
Drosophila melanogaster	50	CG31150	FBgn0051150	FBtr0083189	3	1	1	81	3R	11674489	11674508	CTAAGTTCCATACACCTGGG		59	11674369	11674445	AGTTACCTTCGATCCTGGT		59	NA	
Drosophila melanogaster	50	c(3)G	FBgn0000246	FBtr0083196,FBtr0083195,FBtr0083194	1	3	3	98	3R	11617294	11617385	CGCAAGAGCTGAATAATATGC		59	11617216	11617234	TAGATTTGGCCACTTCTGC		59	NA	
Drosophila melanogaster	50	CG5623	FBgn0038357	FBtr0083197	3	1	1	72	3R	11592522	11592540	TGATCTTTGGCAAGGAGAC		59	11592468	11592486	ATGTAGACACCTGTGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pxb	FBgn0053207	FBtr0083162	3	1	2	60	3R	11510997	11511016	CATCATCACTATCAGCAGCA		59	11512327	11512348	TGGGATAGTGAATACTCTTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12241	FBgn0038304	FBtr0083051	3	1	1	238	3R	11045718	11045736	ATGTGGATGCGTCTATCAG		59	11045999	11046017	TGACAGTAGCCAATGTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34273	FBgn0085302	FBtr0112468	2	1	1	60	3R	10342923	10342942	CGTCCTCTTCATCTAGTTCG		59	10342964	10342983	TACTTCAGATTGCTGAGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pr-set7	FBgn0011474	FBtr0082929,FBtr0082928,FBtr0082930	1	3	3	97	3R	10142502	10142520	CGTTTGATGAAGGTCACTC		58	10142581	10142670	AAGGGAACTCCTATTGTGC		59	NA	
Drosophila melanogaster	50	CG14839	FBgn0038219	FBtr0082920	2	1	1	60	3R	10088769	10088789	CCTCAGATCAAGTATACACAG		57	10088810	10088829	TCTAATAGTGCCGTCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9926	FBgn0038190	FBtr0082877	3	1	1	60	3R	9776311	9776330	TGTGGAGCTAAATTCACTGG		59	9776270	9776289	CTCTGAATCCTTCTCATGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14362	FBgn0038186	FBtr0082881	3	1	1	113	3R	9680822	9680840	GTTTCTGAGCACCTTTCAG		58	9680615	9680633	CCGTCCTTGTTGTTATCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	DDB1	FBgn0027049	FBtr0082709	2	1	1	82	3R	8881939	8881960	GATGGAGATCTAATTGAGAGCT		59	8882002	8882083	TTCAGTGTCAACTCCAATCC		59	NA	
Drosophila melanogaster	50	CG7091	FBgn0038099	FBtr0082692	3	1	1	69	3R	8805870	8805889	TCTTTCCGGATTCTTAGCTC		59	8805977	8805995	ATTCCACTCATCCTTGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	desat1	FBgn0086687	FBtr0082630,FBtr0082628,FBtr0082627,FBtr0082626,FBtr0082629	1	5	5	88	3R	8271987	8272005	GTCGATCTATCCGATCTGC		59	8272118	8272136	ATGATGAAGCAAGCAATCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	GstD1	FBgn0001149	FBtr0100410,FBtr0082607	1	2	2	68	3R	8194034	8194052	ACTCCCTGTACCCTAAGTG		59	8193984	8194002	TTCCCATGTCGAAGTACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Taf12	FBgn0011290	FBtr0082440,FBtr0082441	1	2	3	73	3R	7504709	7504727	TATCTGGTGGTAGCAAGTC		58	7504583	7504672	TTTGGTAAGCATGGGAGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14714	FBgn0037929	FBtr0082422,FBtr0113222	2	2	3	107	3R	7498790	7498808	CAGCCACGAGATTAATGGA		59	7498982	7499000	ATAATGGTACCGGTTCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	pros	FBgn0004595	FBtr0089720,FBtr0089718	1	2	3	164	3R	7202939	7203775	TTCTTCTACATTGACACCGA		58	7203901	7217259	TAGAATTCTCGGAAGTTCGA		58	NA	
Drosophila melanogaster	50	CG31386	FBgn0051386	FBtr0082359	3	1	1	137	3R	7103453	7103472	GATAAAGGTTAGAGGGAAGC		57	7097286	7103354	CAACAATCGCATATTCATGG		57	NA	InUTR
Drosophila melanogaster	50	CG10703	FBgn0037881	FBtr0082366	2	1	1	90	3R	7054235	7054253	AATGCACGAGAAGATCGAG		59	7054095	7054114	CTTCAGGTACTCCAGATTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ugt86De	FBgn0040255	FBtr0082376	2	1	1	60	3R	6992533	6992551	GCTCATCCAAACGTAAAGC		59	6992491	6992509	TACATTCGACTGTGCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31467	FBgn0051467	FBtr0082320	2	1	1	60	3R	6531998	6532017	AGACCAACGATATGAAACGA		59	6531957	6531976	GCAACAAGCATACGATACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pnn	FBgn0037737	FBtr0113210	3	1	2	67	3R	5567627	5567645	GACGATACTGCAATAGACG		57	5567675	5567925	AAAGACTTATCCAACTGCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG9386	FBgn0037708	FBtr0082115	2	1	1	60	3R	5380367	5380386	ACGGTCTGTTAGTTCATGTC		59	5380326	5380346	CTTATATCGTAGCCATACCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11970	FBgn0027503	FBtr0081959	3	1	1	266	3R	4814693	4814784	GATCATTGTGGGCAATACG		58	4815014	4815032	CCAGTTCCTACAGATGTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG7549	FBgn0037559	FBtr0081825,FBtr0081826,FBtr0110951	3	3	3	86	3R	4085351	4085369	CACCTACAAGCTTCTCCTG		59	4085419	4085508	ATACGTGGAATACCATGCA		58	NA	
Drosophila melanogaster	50	CG7549	FBgn0037559	FBtr0081825,FBtr0081826,FBtr0110951	2	3	3	86	3R	4085351	4085369	CACCTACAAGCTTCTCCTG		59	4085418	4085508	ATACGTGGAATACCATGCAG		59	NA	
Drosophila melanogaster	50	CG2698	FBgn0037536	FBtr0081784	1	1	1	80	3R	3828159	3828284	CGTATACGTGCTCATTTCC		58	3828328	3828346	AAGTGGGCACTATTCTCTG		58	NA	
Drosophila melanogaster	50	CG34384	FBgn0085413	FBtr0112625	1	1	1	80	3R	3662436	3662454	GACGATATCGACCTATCGG		58	3662497	3669468	GGGTGTGATTATCTGAAAGC		58	NA	
Drosophila melanogaster	50	Ubc84D	FBgn0017456	FBtr0081552	1	1	1	60	3R	3344909	3344927	CGCATCGAAATCAACTTCC		59	3344867	3344888	TCTTGAATAGGATCTTTGGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst84Db	FBgn0004173	FBtr0081586	1	1	1	124	3R	3191223	3191241	TTTACGGAACCATCATGTG		57	3191117	3191135	AGATCCACAAGGACTACAG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	pb	FBgn0051481	FBtr0089279,FBtr0089278,FBtr0089277,FBtr0089276	1	4	4	80	3R	2536680	2537243	ATGATCAGTCCGATAGTAACTC		58	2536621	2536640	TGGAATCGGGTATATCATCG		58	NA	
Drosophila melanogaster	50	CRMP	FBgn0023023	FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686	2	4	4	82	3R	1404085	1404170	CATAAGTGAGGAGCTCGAC		59	1404215	1404234	AGAATCCAGAAGACTTTCCG		59	NA	
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0110932,FBtr0078812,FBtr0078818	1	3	15	135	3R	1129894	1131442	AATACTATTGGTCACGTAGGG		59	1125242	1125260	GAGTCCAAGTCGAATGGAG		59	NA	
Drosophila melanogaster	50	Hph	FBgn0086689	FBtr0078782,FBtr0078781,FBtr0078780	1	3	3	110	3R	1092744	1092852	TGACCAATCAGATTGACTCTG		59	1092985	1093003	GATAACAAGCGACCATTGC		59	NA	
Drosophila melanogaster	50	CG12163	FBgn0037303	FBtr0078823	1	1	2	159	3R	1065331	1069567	AGAAATATGTCCATCGCAG		57	1064896	1064915	GAGGCTGAGTATACTTTCAC		57	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338	2	5	15	172	3R	110114	120854	TAAGTGCCGTTAAAGGAGG		59	120990	121008	CTTATCGCGAATGTCTTGC		59	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897	2	5	15	193	3R	110111	120843	AATTAAGTGCCGTTAAAGGC		59	120999	121298	GATGTTGTACTTATCGCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113342	1	1	15	209	3R	114863	114881	ATCTATTCCAAAGCAGGCA		58	120999	121298	GATGTTGTACTTATCGCGA		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0100499	2	1	15	218	3R	120625	120643	GAATGATAACACGCTAGGC		58	121000	121299	TGATGTTGTACTTATCGCG		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	snoRNA:Psi28S-2622	FBgn0086670	FBtr0091635	2	1	1	77	3L	1488921	1488940	CAGTTTGTTGCAATTTGACG		59	1488975	1488998	CCTATGATTATCCGGAAGTATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12460	FBgn0040045	FBtr0111161	1	1	1	212	3L	24527970	24527988	GATCCAGGATTCAGAGGTC		58	24528267	24528317	AGATTTCTCACCATTCGCA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG17698	FBgn0040056	FBtr0111168,FBtr0111167	2	2	3	163	3L	23734173	23739296	CAAATTGGACAGGGATCCT		59	23739421	23739441	CTGTAAACTCGATCTAGAGGT		58	NA	
Drosophila melanogaster	50	CG40294	FBgn0058294	FBtr0111150	1	1	1	60	3L	23573571	23573590	AATAGAAACTCTTCCGAACG		57	23573530	23573551	CCAGGTGGAATAGAATAATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33217	FBgn0053217	FBtr0070045	2	1	1	92	3L	23119449	23119468	TGCAAATTACCTGAGTTGTG		58	23119839	23119857	TGACACATTACCGTCACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	jim	FBgn0027339	FBtr0078581	3	1	3	100	3L	22789580	22790217	GGCAAATTTCGCAAATTCG		59	22789498	22789518	TAAGTTGGAGGATTGATACGC		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	mael	FBgn0016034	FBtr0089631,FBtr0089633,FBtr0089632	1	3	3	117	3L	22718019	22718093	GATGTCCCATGATCTGGAG		59	22718174	22718192	CAACGAATATTCGCATGCC		59	NA	
Drosophila melanogaster	50	CG11425	FBgn0037167	FBtr0078507	2	1	1	71	3L	22467998	22468016	ACTTATTGTCCTGGTGGAG		58	22468051	22468069	TCATCACAGAAGAAACCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CS-2	FBgn0029091	FBtr0078476,FBtr0114557	1	2	2	80	3L	21955811	21955832	CTTGATTTATCTCTACATGGCC		58	21955873	21955949	CGGAGTACTGGATACTTGC		59	NA	
Drosophila melanogaster	50	CG10510	FBgn0037059	FBtr0078310	2	1	1	157	3L	21201835	21201908	AGTTGACCAAGCAAATGGA		59	21201696	21201716	CAGCTTGAAGTATTCATCGAC		59	NA	
Drosophila melanogaster	50	Mst77F	FBgn0000093	FBtr0078270	2	1	1	60	3L	20810755	20810775	CTCGAATAACGAGATAAGACG		58	20810715	20810733	ATGACGGAATGACATTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4365	FBgn0037024	FBtr0078254,FBtr0078253,FBtr0078252	3	3	3	67	3L	20792308	20792326	GGCATGGAGATCAAGATCC		59	20792356	20792375	GTCTTCGTGTCTACAATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rdgC	FBgn0004366	FBtr0074834,FBtr0074833,FBtr0074835	3	3	4	125	3L	20253973	20253993	GCAATCTTCATCCAGAAATGG		59	20254080	20254321	TTTGTATAGCTCAGCCTGG		59	NA	
Drosophila melanogaster	50	CG7757	FBgn0036915	FBtr0074891,FBtr0074892	2	2	2	60	3L	19904084	19904102	GATTCTGGACGATGAAGGA		58	19904124	19904144	CGTGGGAATATTAATGGTACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Paps	FBgn0020389	FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885	2	6	6	94	3L	19853427	19853509	TAGACAGCATGGAGATCCT		59	19853566	19853585	AAACTCATCCTTCCTCTTGG		59	NA	
Drosophila melanogaster	50	Fibp	FBgn0036911	FBtr0089595,FBtr0089596,FBtr0089594	2	3	3	98	3L	19809913	19809982	TATACTTACCAGCACACTGG		58	19809834	19809852	TTCCTTGTCGAGTAGACAG		58	NA	
Drosophila melanogaster	50	CG9392	FBgn0036895	FBtr0074948	3	1	1	60	3L	19614225	19614244	GACGAACACAAACTACTGGA		59	19614267	19614285	TTCTCTTGATCCGCTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9330	FBgn0036888	FBtr0074940	2	1	1	92	3L	19580839	19580857	GTAGTTTCTCACGATCGCA		59	19580911	19580990	ATAGTTTCCCTTGTATGCCTC		59	NA	
Drosophila melanogaster	50	Shal	FBgn0005564	FBtr0074973	1	1	2	88	3L	19565448	19565466	GGATGACAACTATCGGGAC		59	19565167	19565397	AATGTTGCTACATCGTTGTC		58	NA	InUTR
Drosophila melanogaster	50	CG9300	FBgn0036886	FBtr0074938	1	1	1	81	3L	19546341	19546441	GACCATTTGGTCTGATAAACG		59	19546484	19546502	AGATACGAATTGTCCAGGG		58	NA	
Drosophila melanogaster	50	CG14084	FBgn0036855	FBtr0074990,FBtr0074989	2	2	2	61	3L	19255134	19255152	AATGTGCTACATGTTCCTC		57	19255176	19255195	ACTTTAGGGTTATCCAGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6893	FBgn0036807	FBtr0114373	1	1	1	62	3L	18687656	18687674	TTCAAATCTCCAACAGGCA		59	18687877	18687898	GCACTTAATCCATCGTATAGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6897	FBgn0036800	FBtr0075108	1	1	1	60	3L	18616447	18616466	AGCGCATAATACTCAATTGC		59	18616489	18616507	ATCCTTCGCGACTTATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9669	FBgn0036667	FBtr0075339	2	1	1	62	3L	16837870	16837888	TCATCGGAACCTTCTTCAC		59	16837826	16837845	CCTTAGAGCTCTTTCGAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32158	FBgn0052158	FBtr0075407,FBtr0113426	1	2	7	81	3L	16513216	16513234	CAAACATTATCGACGCCTC		58	16511681	16513171	CTCTCGCATCCTGTATCTG		59	NA	
Drosophila melanogaster	50	CG4573	FBgn0036629	FBtr0075411	3	1	1	88	3L	16409019	16409037	GTTTGTCTGGGAATGAGAG		57	16408889	16408967	ATCTAAGTTGGAGTGTTGC		57	NA	
Drosophila melanogaster	50	Mbs	FBgn0005536	FBtr0112852	1	1	6	80	3L	16058524	16059132	ATGTATTACAGGAAACCGACC		59	16059174	16059192	CTGTACAGTTGTCGATGGA		59	NA	
Drosophila melanogaster	50	Arf72A	FBgn0000115	FBtr0075517	2	1	1	61	3L	15976685	15976974	CAAGTATTAGACCTTATTGGCG		58	15976996	15977014	CACCACATAGATGATTGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Pka-C3	FBgn0000489	FBtr0075529,FBtr0075528	3	2	2	86	3L	15921444	15921463	TGATCTTCGACTATGTCTGC		59	15921312	15921397	CATAGAAGTTGGAGGTTTGAC		58	NA	
Drosophila melanogaster	50	CG7304	FBgn0036527	FBtr0075577,FBtr0075576	1	2	2	60	3L	15673481	15673501	CATTACTTGATACCATTGCGG		59	15673520	15673541	AGATTATCAAGAATGGGAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6876	FBgn0036487	FBtr0075642	3	1	1	245	3L	15153548	15153625	TTTCGGAGACATCGAAGAG		59	15153834	15153852	ATCTCTAGACCTTGCAGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	nan	FBgn0036414	FBtr0089524	1	1	1	174	3L	14179634	14179711	CGGTTGAATATGACTGAGGA		59	14179479	14179497	TGTTATCGGAACATTCCGA		58	NA	
Drosophila melanogaster	50	CG33263	FBgn0053263	FBtr0075859	1	1	1	60	3L	13416904	13416922	CTGATTACGCCTCTACAGG		59	13416862	13416882	GTTGTTGTAGAATCAGCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF-2beta	FBgn0004926	FBtr0075968	1	1	1	193	3L	12518773	12519099	AGACAAAGAGAACGACGAG		59	12518598	12518616	CAAAGGAGGTCTTCTTGGT		59	NA	
Drosophila melanogaster	50	CG17153	FBgn0036248	FBtr0075992	1	1	1	116	3L	12111945	12111963	TGAAGTCACTGGGTTTCAC		59	12112103	12112121	ATTCCCACTGGGATTTGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17154	FBgn0036246	FBtr0075990	1	1	1	60	3L	12082045	12082064	CCAAGCTAACGATATACGTG		58	12082087	12082105	TGTATGCCCAATAGCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14126	FBgn0036223	FBtr0076068	2	1	1	60	3L	11929689	11929707	CTCCACTTTCTATCCAGCT		58	11929647	11929665	GGAAATGCCTGTGTATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11660	FBgn0036187	FBtr0076135,FBtr0076134	1	2	2	106	3L	11639975	11639993	CAGAACACCTACATTCCCA		58	11639826	11639845	GTGATCTTTCCGTAGATGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG34356	FBgn0085385	FBtr0112566	2	1	1	81	3L	9939057	9939075	CAAGGAGACCATAACGGAG		59	9939118	9939250	ATAGATTTGTAGTATCCGCGG		59	NA	
Drosophila melanogaster	50	CG14180	FBgn0036003	FBtr0076467	3	1	1	75	3L	9467170	9467189	TAAACAAGATCTATGTCGCC		57	9467290	9467308	TTATAGCTCTCCATGCCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3437	FBgn0035998	FBtr0076474	2	1	1	89	3L	9449927	9449945	TATAGAGTGCTCATGGGTG		58	9449771	9449876	CAACAAACTCCTCCTTATCAC		58	NA	
Drosophila melanogaster	50	CG4911	FBgn0035959	FBtr0076542	1	1	1	100	3L	9063736	9063814	CTACAATGAAGAGATAAGCACC		58	9063657	9063675	GATCGCGTAAATCGTTGTC		59	NA	
Drosophila melanogaster	50	Cp15	FBgn0000355	FBtr0076572	3	1	1	156	3L	8721893	8721911	GAGGGTAATGGAGGAAGTG		59	8722030	8722049	AGAATTAGTAAGCACGTTGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG32352	FBgn0052352	FBtr0076628,FBtr0076629,FBtr0076630	3	3	3	189	3L	8581743	8581761	GACATCAGTCCAGATCTGC		59	8581912	8586580	CGTATTCATGATCACTCTCGT		59	NA	
Drosophila melanogaster	50	CG32352	FBgn0052352	FBtr0076628,FBtr0076629,FBtr0076630	3	3	3	189	3L	8581743	8581761	GACATCAGTCCAGATCTGC		59	8581912	8586580	CGTATTCATGATCACTCTCGT		59	NA	
Drosophila melanogaster	50	CG7066	FBgn0035869	FBtr0076707	3	1	1	66	3L	8298022	8298040	GAAATTGTTGTTCCTGGCC		59	8298122	8298141	TATAGTCGCATCTAGACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ect4	FBgn0085402	FBtr0112601	3	1	5	151	3L	8072730	8086167	CAGCATTATCAGATGACAGAC		58	8086280	8086298	AAGGTTGTTGGAGTTAGGG		59	NA	
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780	3	8	8	128	3L	7811268	7811288	CCAGATGACAAATACAAGGAG		58	7810754	7811178	GTCGGCATATTGTGTTACC		58	NA	
Drosophila melanogaster	50	CG32369	FBgn0052369	FBtr0076784,FBtr0076783	2	2	2	256	3L	7772127	7772145	CCAAGGTGGAGTACATCTG		59	7771828	7771908	AATGTCCACCTTTAGTTGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33277	FBgn0053277	FBtr0089852	3	1	1	86	3L	7438805	7438823	AGTTCACCAATCCATTCGA		58	7438870	7441176	CCATGTTGACATCTAATGTCTG		59	NA	
Drosophila melanogaster	50	CG10107	FBgn0035713	FBtr0076952,FBtr0076950	2	2	3	86	3L	6741017	6741036	GAAATCTCCACGAACTTTCC		58	6740081	6740970	GGGAGAAATCTTTGTACAAGG		58	NA	
Drosophila melanogaster	50	sfl	FBgn0020251	FBtr0076968	1	1	1	80	3L	6540630	6540648	TAAATGCCTCGGAAAGTCC		59	6540691	6541795	AGATAGTATCGCTGCAACAG		59	NA	
Drosophila melanogaster	50	Bj1	FBgn0002638	FBtr0077075	3	1	3	113	3L	5925537	5925555	CTAGACAACGTGGAACTCC		59	5925354	5925373	TATTAGTCAGGGCCTTTCTG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15014	FBgn0035532	FBtr0073340	1	1	1	60	3L	4321270	4321289	TGAATCTTCAGAAGAGTCCA		57	4321229	4321248	GTCATTCTCAGTAGAGTCCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1273	FBgn0035522	FBtr0073231	1	1	1	107	3L	4274083	4274164	CAATCTGGAGGATCCTGTC		59	4274235	4274253	TTCTGTTTGTAGGTGGTGG		59	NA	
Drosophila melanogaster	50	CG14990	FBgn0035496	FBtr0073208	3	1	1	60	3L	4093953	4093972	CAGGATCAGTTGAGAAACAC		58	4093995	4094013	ATATCAGACTAGCAGGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr64e	FBgn0045476	FBtr0073199,FBtr0073200	2	2	2	60	3L	4034505	4034525	CAGCACATTAACATGATCACC		59	4034547	4034625	TCATAATGTGCTCCACCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG11594	FBgn0035484	FBtr0073283,FBtr0073285,FBtr0073284	1	3	3	74	3L	4023587	4023605	GAGGAACTGAATCTCTGGC		59	4023473	4023491	CAATAATGTGACGTGTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12016	FBgn0035436	FBtr0073063,FBtr0073064	1	2	2	60	3L	3321534	3321552	ATCGCCAAAGAGAAGATCC		59	3321576	3321594	GCTCCTTGAAGTAGTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1246	FBgn0035360	FBtr0072938	3	1	1	89	3L	2648583	2648670	ATTGTCATACTCGTCCAGG		58	2648723	2648741	GAAATCAGTAACGCCATCC		58	NA	
Drosophila melanogaster	50	CG32295	FBgn0052295	FBtr0072962	2	1	1	60	3L	2526089	2526107	ATAGTCAGAAGTCACCCGA		59	2526047	2526067	CGAATAAGCTCCATCAAATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33232	FBgn0035347	FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920	1	4	4	80	3L	2495895	2495913	GAGTACACCGAAATGAGGT		58	2495954	2496034	GTTGGCATTATGACCATATGAC		59	NA	
Drosophila melanogaster	50	CG15822	FBgn0035308	FBtr0072917,FBtr0114630	2	2	2	76	3L	2157416	2157434	CAACATCCACGAGATTCAG		58	2157127	2157376	CATAGTGGTAGATGCTCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13937	FBgn0035287	FBtr0072863,FBtr0072861,FBtr0072862	1	3	3	113	3L	1877653	1877770	ACATTATCTGGTGCAATGTC		58	1877559	1877577	TGAGAAGGATCTTCTTGGT		57	NA	Nonspecific
Drosophila melanogaster	50	Sac1	FBgn0035195	FBtr0072652	2	1	1	60	3L	1249346	1249364	CATACTCATCGATCGCCTC		59	1249387	1249406	GTCGAAGACATGATAGACAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Glut1	FBgn0025593	FBtr0072615	1	1	6	88	3L	972395	973835	GTTTCCAGTGTCCAATTTGAG		59	973884	973903	GTTGTGTAGACGTTGTTGTG		59	NA	
Drosophila melanogaster	50	miple	FBgn0027111	FBtr0072505,FBtr0072504	1	2	2	148	3L	268950	269104	CAAAGATAAAGCTGCTCGC		59	269216	269234	ACAGTTAACGTCGTTACGA		58	NA	InUTR
Drosophila melanogaster	50	bs	FBgn0004101	FBtr0072271	2	1	1	203	2R	20235972	20262944	GAGGACTCGAAAGATGACC		59	20263111	20263129	CTGATAGTTCAATGCTGGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG13576	FBgn0034994	FBtr0072274	1	1	1	60	2R	20138194	20138212	AGTTGCTCTTCTCTATGCC		59	20138152	20138172	GTAGTAATCATTGACCAGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dat	FBgn0019643	FBtr0072255,FBtr0072254	1	2	2	157	2R	20043491	20044428	TTTCTTCAAGGATGAACCG		57	20044548	20044567	GCCTCATAAGTCCATTTAGG		57	NA	
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	3	8	8	81	2R	19817553	19817571	GGATATCATGGAGAAGCCC		59	19817426	19817508	TCCAATAGCCATGTAACGG		59	NA	
Drosophila melanogaster	50	CG17664	FBgn0034883	FBtr0072107,FBtr0072108	3	2	2	66	2R	19491541	19491559	TATGAATCCAGTCCGATCC		58	19491493	19491511	GTAGATCCAGTGGTCATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30185	FBgn0050185	FBtr0072060	3	1	1	126	2R	19432068	19432159	GATCTTGTGAAATCCCTTTCG		59	19432247	19432265	AGATGGTGGTGAAGTTCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Gmer	FBgn0034794	FBtr0071905	2	1	1	121	2R	18775457	18775475	GAACTACGAAAGTGTGGAG		57	18775298	18775316	TATCACAGACCAGTCTTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG30270	FBgn0061435	FBtr0089763,FBtr0089762	1	2	2	60	2R	18672276	18672295	TTCTTTGGCCAGTATTACGA		59	18672318	18672336	AATCGTAGGAATGTGGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3746	FBgn0034755	FBtr0071929	1	1	1	223	2R	18536840	18536922	TGCTATCCTGCATCTTTCC		59	18536635	18536656	GTCTTTAATTGAGTTAGACGCG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Cdk9	FBgn0019949	FBtr0071937	3	1	1	151	2R	18524375	18524461	ATCCACAGCAACAAGATCC		59	18524242	18524260	ACTACGCGATTGGTATAGC		59	NA	
Drosophila melanogaster	50	wdp	FBgn0034718	FBtr0071851	3	1	4	176	2R	18198687	18198706	CGAATAATACGTACTCACGC		58	18188505	18195724	GGCGTCTTATCTTCTATAAGAC		57	NA	InUTR
Drosophila melanogaster	50	HmgD	FBgn0004362	FBtr0071708,FBtr0071709	1	2	2	201	2R	17603110	17603202	GAAGGACAAGTCTGAGTGG		59	17603367	17603385	CTACTCGCTCTCATCATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15649	FBgn0034563	FBtr0071555	3	1	1	140	2R	16860891	16860972	GTACTACGAGAAGAACGGA		58	16860769	16860787	TAGTTCACATTGTGTTCCC		57	NA	Nonspecific
Drosophila melanogaster	50	CG9993	FBgn0034553	FBtr0071560	1	1	1	169	2R	16738962	16738980	CTGCACTGGATACGATGAG		59	16738691	16738709	TATCCGAGGTAAAGAGCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15225	FBgn0034551	FBtr0071513	2	1	1	175	2R	16680750	16680768	CAAGAAATCCAAGACGACC		58	16680907	16680925	CACTATGTCCACCATGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fem-1	FBgn0034542	FBtr0086245,FBtr0086246	2	2	2	83	2R	16551360	16551447	GCAATAATGTATCGGTAGATCG		58	16551298	16551317	TAAGATTGTGGTTCTCCACC		59	NA	
Drosophila melanogaster	50	CG11055	FBgn0034491	FBtr0086271,FBtr0086270,FBtr0086272	3	3	3	141	2R	16148062	16148142	CTTACACTTAACATGGACCC		57	16148245	16148324	CTTCGTTGGATAACATTGTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG34198	FBgn0085227	FBtr0112391	2	1	1	88	2R	15570292	15570310	CCAAGGATAACAGTTGCTG		58	15570222	15570240	CTTTCACATGATGGTGCAG		59	NA	Nonspecific, DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Jheh1	FBgn0010053	FBtr0086625	3	1	1	86	2R	14742094	14742112	TTCACCACCGATATTCAGG		59	14741972	14741991	CGGATAGTGTTTCTTACCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5742	FBgn0034304	FBtr0086780	2	1	1	61	2R	14037960	14037978	CTGCGATACGAGGAATCAG		59	14037917	14037936	AGTATATCGGTCGACATGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	olf186-F	FBgn0041585	FBtr0086796,FBtr0086797,FBtr0086795	1	3	5	78	2R	13738637	13738655	TAGAGACGCCAACAAAGTC		59	13738697	13738715	TTTCCAGTGGTGATCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14482	FBgn0034245	FBtr0086905	1	1	1	60	2R	13459966	13459984	TGCTTTACTACACCGACTG		59	13459924	13459942	AACTTGGATCCGTAGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4847	FBgn0034229	FBtr0086937,FBtr0086934,FBtr0086933	3	3	5	199	2R	13400212	13400290	GACTTCTTGAGCCAATCTG		58	13400453	13400471	TTCAGACCGGTCAATTGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG30104	FBgn0050104	FBtr0086928,FBtr0086927	1	2	2	84	2R	13378862	13378939	GATGCTATATCCTTGGGCA		58	13378987	13379005	GTACAGGAAAGGTGACCTC		59	NA	
Drosophila melanogaster	50	ProsMA5	FBgn0016697	FBtr0086910	2	1	2	81	2R	13300522	13300540	CAGCAATTGGAATTTGCAC		58	13300643	13300661	GTACTGGGTACCATTAGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Sply	FBgn0010591	FBtr0087008,FBtr0087007	2	2	2	192	2R	12976443	12976520	TTTCCATCTGGTATCCACC		58	12976269	12976287	GAGTCACTTCTCCGATCAC		59	NA	
Drosophila melanogaster	50	Ark	FBgn0024252	FBtr0086968	1	1	2	81	2R	12913113	12913133	CAAGATCAGCTATTTGGTAGC		58	12913176	12913258	GGCAAAGAGCTCTAAAGTG		58	NA	
Drosophila melanogaster	50	CG30099	FBgn0050099	FBtr0087180	1	1	1	76	2R	12176406	12176425	GCCTCAACTGGTATTTACTC		57	12176349	12176367	TCCATTCGTGAACTTTCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fidipidine	FBgn0025519	FBtr0087185	1	1	1	93	2R	12151724	12151742	GTATGACTTGGTGCATCGA		59	12151588	12151667	ACCAAGGCAATCTTCTGTC		59	NA	
Drosophila melanogaster	50	shark	FBgn0015295	FBtr0087244	3	1	1	176	2R	12089207	12089225	AACCTGAAGTAGACACCTC		58	12088995	12089067	TGTACAGAAACTTGGACCC		59	NA	
Drosophila melanogaster	50	spin	FBgn0086676	FBtr0089592,FBtr0089591	1	2	5	80	2R	12020077	12020098	GACCTTCCTTCATCTATCTAGG		58	12020138	12020350	CAAACTTGTACGAGATGTCG		58	NA	
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	3	5	7	82	2R	11836642	11836721	TTTGCTACGTGCTACTCTC		59	11836578	11836599	ATCCGCTCTAGTTATATTCGAG		59	NA	
Drosophila melanogaster	50	l(2)k05713	FBgn0022160	FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309	3	4	4	112	2R	11745506	11745703	TACCTTCAGATGATGTCGG		58	11745412	11745430	CTGATCTGCTTCAGATTGG		57	NA	
Drosophila melanogaster	50	CG30080	FBgn0050080	FBtr0087319	2	1	1	87	2R	11588822	11588896	ATTCTCCTAATGGCGATTGG		59	11588754	11588774	CTAACTGGGAAATTCGTTGAG		58	NA	
Drosophila melanogaster	50	CG8204	FBgn0034033	FBtr0087349	3	1	1	114	2R	11461025	11461043	GACTGAAGTTGGCTACCAG		59	11460871	11460889	CAAATTACGCAGTTCCTGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG7639	FBgn0033989	FBtr0087423,FBtr0087424	3	2	2	80	2R	10876490	10876508	GGCCAATGATCTACAACTG		58	10876367	10876446	CTGAAAGACATTTCAGGCC		58	NA	
Drosophila melanogaster	50	Ciao1	FBgn0033972	FBtr0087460	1	1	1	61	2R	10741540	10741558	GATCAGGACGTAAACTCGG		59	10741497	10741515	CTGCATGATATCAGTTGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ave	FBgn0050476	FBtr0087439	3	1	1	68	2R	10640217	10640235	ATACACCCAGTATGAGCAG		58	10640470	10640488	TCTGTGATCCGGAGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpn6	FBgn0028689	FBtr0087474	3	1	2	130	2R	10639321	10639339	CCGATCTCATCAAGGTGAC		59	10639145	10639228	ACACAATTGAACCTCAATGC		59	NA	
Drosophila melanogaster	50	CG34379	FBgn0085408	FBtr0112614	2	1	3	117	2R	10203028	10213362	GTTCTGTACAGGATGACCT		58	10213443	10213461	TTATTGTACTCCTCGAGGC		58	NA	
Drosophila melanogaster	50	CG13334	FBgn0033856	FBtr0087677	2	1	1	60	2R	9446559	9446577	TTATCATCTCAAATCCCGC		57	9446600	9446619	GGTAGATTGGTTATTCGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cid	FBgn0040477	FBtr0087667	3	1	1	75	2R	9373775	9373793	GACTCCTACATGCTAACCA		58	9373832	9373850	AGATGTAGGCCATCAATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cnn	FBgn0013765	FBtr0100656,FBtr0087704	2	2	5	139	2R	9334702	9334723	TCGATCTACCTCACTAAATCAC		59	9332635	9333062	AACTGGCATATGAGTTCTCC		59	NA	
Drosophila melanogaster	50	CG17050	FBgn0033831	FBtr0087719	2	1	1	90	2R	9277947	9278040	TGATGTTTCAGGCTTTGGA		59	9277875	9277895	GCAGAGGTATACAATTCTTCG		58	NA	
Drosophila melanogaster	50	seq	FBgn0028991	FBtr0100501	3	1	1	107	2R	9072345	9072363	TCATATCAAACTACGGCCA		58	9070714	9070733	CGAACTAATAGTTGTGACCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	mRpL18	FBgn0026741	FBtr0087852	1	1	1	77	2R	8644140	8644158	GAATACGTGATCAACCGGA		59	8644199	8644217	CTCCAGATGATAGCCTACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8776	FBgn0033764	FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869	1	5	5	104	2R	8548250	8548271	CATAAGGTCAACTTCTATAGCC		58	8548111	8548185	CAGCATTACCAGAAAGCTG		58	NA	
Drosophila melanogaster	50	CG8776	FBgn0033764	FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869	1	5	5	104	2R	8548250	8548271	CATAAGGTCAACTTCTATAGCC		58	8548111	8548185	CAGCATTACCAGAAAGCTG		58	NA	
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835	1	6	8	107	2R	8504611	8504629	GCATATTTACCCACTGAGC		58	8504697	8505312	GACGTCTACCATTCTAAATCTG		58	NA	
Drosophila melanogaster	50	Cyp301a1	FBgn0033753	FBtr0087824	2	1	1	81	2R	8455035	8455055	GTTTGGTCAAGTACAAGAGTG		59	8455098	8455170	CAAGGCTCTCCATGTACTC		59	NA	
Drosophila melanogaster	50	CG30051	FBgn0050051	FBtr0114521	3	1	1	95	2R	8323930	8324023	CTTCCTAGTACTGTTGCTG		57	8324082	8324100	TCGAAGTATTGTTGTCTGG		57	NA	
Drosophila melanogaster	50	CG13162	FBgn0033718	FBtr0087904	2	1	1	60	2R	8238057	8238076	CAACACATCTTAAAGTGCGA		58	8238099	8238117	AATACCTCCCAGAATCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rep3	FBgn0028407	FBtr0087980,FBtr0087979	3	2	2	127	2R	7943777	7943795	GGATAGCATCACCTTGGAG		59	7943884	7949025	TGATGTCCTTGATCTTGAAGG		59	NA	
Drosophila melanogaster	50	CG34231	FBgn0085260	FBtr0112424	3	1	1	103	2R	7873773	7873791	TACAGTTGCTAGTGAGTCC		58	7873858	7873977	CTTCCAGATCCACAAATCC		57	NA	
Drosophila melanogaster	50	wal	FBgn0010516	FBtr0088082,FBtr0088083	1	2	2	120	2R	7578024	7578042	TACTCAATCCGATCACCCT		59	7577365	7577383	CCATCCACCTTGGAAAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12384	FBgn0033624	FBtr0088155	2	1	1	195	2R	7245772	7245854	GTACTGGACTGACACAACC		59	7245595	7245614	TAATAGTTATTCCGCCCGAG		59	NA	InUTR
Drosophila melanogaster	50	Syx6	FBgn0037084	FBtr0088104,FBtr0088103	3	2	3	129	2R	7108119	7108443	CACTATCAGCATCGTTGAG		57	7108535	7108554	GTTCAGGCTCATCTTATCCT		58	NA	
Drosophila melanogaster	50	psq	FBgn0004399	FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606	1	12	12	88	2R	6499952	6500255	GCATATGGACATGTATAACTCG		58	6500304	6500322	TATAGTGCGGTTCCTTCTG		58	NA	
Drosophila melanogaster	50	cbx	FBgn0011241	FBtr0088453,FBtr0088452	1	2	2	228	2R	5752729	5752809	ATGCTAACTCCTTGCAGTG		59	5752465	5752483	CAAAGGTGATCCTCTCCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG1623	FBgn0033448	FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487	1	4	4	69	2R	5716115	5716133	GAACTACGAACCCAAGACC		59	5716064	5716082	ATCCGGATACTTGTTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lectin-46Ca	FBgn0040093	FBtr0088476	1	1	1	60	2R	5705269	5705287	GCTTCAAGTACATCAGCAG		58	5705311	5705329	TCCACAATATTGGAGTCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30002	FBgn0050002	FBtr0088466	3	1	1	156	2R	5592562	5592655	CTTTAAAGATCACATACGACCC		58	5592769	5592790	CTCAGTTCTTATATCCACCTCC		59	NA	
Drosophila melanogaster	50	stmA	FBgn0086784	FBtr0088715,FBtr0100111,FBtr0088716	2	3	3	113	2R	4618186	4618264	TTTATCCTCGGAATCCAGC		59	4618091	4618109	ACTAACACGCGAGATTAGC		59	NA	
Drosophila melanogaster	50	CG2121	FBgn0033289	FBtr0088764	1	1	1	81	2R	4285172	4285190	CAACTCCATCTTCCTCACC		59	4284851	4285127	TACTCCATAGCGTTTGAGG		58	NA	
Drosophila melanogaster	50	CG11210	FBgn0033259	FBtr0088781	1	1	1	92	2R	3987897	3987915	CTATACGTAAGGAACGCCG		59	3987968	3988047	TGGTTTAACCATGAGAGTATCC		59	NA	
Drosophila melanogaster	50	CG34430	FBgn0085459	FBtr0112731	2	1	1	91	2R	3831378	3831397	ACTTAATTTGGTGGAGACAC		57	3831630	3831648	GCTTCTGGGAGGAATACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30492	FBgn0050492	FBtr0088917	1	1	6	131	2R	3525868	3526111	GTGAAATTAGATCTGCCGG		58	3526206	3526224	GATGGTCTCGATGAGACTG		59	NA	
Drosophila melanogaster	50	didum	FBgn0015933	FBtr0089745,FBtr0089744,FBtr0089743	1	3	3	120	2R	3389124	3389142	CTACTGGAGAAGTCACGTG		59	3389226	3389309	ATTTGTCCTGGTGATCCAG		59	NA	
Drosophila melanogaster	50	Tsp42Ee	FBgn0029506	FBtr0086180	3	1	1	82	2R	2905065	2905084	CGTCGAATTAATGACCACTG		59	2905129	2905210	AGATAAAGCCGATCAGCTC		59	NA	
Drosophila melanogaster	50	cta	FBgn0000384	FBtr0111126	2	1	1	88	2L	22883614	22883690	CGTTATAAGAGGTATGCAAGTC		58	22883738	22883757	CATAAGCATCCTGTTCTCTG		58	NA	
Drosophila melanogaster	50	CG17490	FBgn0040009	FBtr0111256,FBtr0111258	2	2	4	180	2L	22433045	22440281	CATACAATAATGAGAAGGTGGG		58	22440422	22440440	CTCATATAGTCAGCGGGTG		59	NA	InUTR
Drosophila melanogaster	50	CG5922	FBgn0032983	FBtr0085962	3	1	1	62	2L	22213547	22213566	TTTAAAGGTCGTACCTTTCG		57	22213428	22213447	GAAGCTGTTATTGCAATACG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11630	FBgn0032964	FBtr0085909	2	1	1	60	2L	21782663	21782681	AGTAACAATCGTCGTCTGG		59	21782621	21782640	TAGGTAAGTTCTGGAGAGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His2B:CG33892	FBgn0053892	FBtr0091896	1	1	1	61	2L	21477940	21477958	AAGAACATCACCAAGACCG		59	21477897	21477915	TAGATGGCATAGCTCTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	crc	FBgn0000370	FBtr0081512	3	1	3	89	2L	21312193	21318132	GACCTGAAAGATGAAGAATGTC		59	21318181	21318200	ATTAATGTTCGGCTGAAAGC		59	NA	
Drosophila melanogaster	50	Mio	FBgn0032940	FBtr0081524,FBtr0081527,FBtr0081528,FBtr0081526,FBtr0081525	3	5	5	84	2L	21286543	21286562	TAGTCTTGATGAGCTACGTC		58	21286415	21286496	ATTTGTAACAGCTGGACGA		59	NA	
Drosophila melanogaster	50	CheB38c	FBgn0032888	FBtr0081452	3	1	1	86	2L	20820404	20820422	GATCCAAGAGAAGTGCCTC		59	20820275	20820294	CCCAACACGTTATTTAGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	ik2	FBgn0086657	FBtr0081390	3	1	2	120	2L	20677376	20677394	ATTGACAACTTCCGAGAGC		59	20677477	20677552	ATGCTTTAGCTATCGTTCGT		59	NA	
Drosophila melanogaster	50	spir	FBgn0003475	FBtr0081353,FBtr0081352	2	2	4	148	2L	20334709	20334730	AGAACTAGAGCACATAATCGAG		59	20336395	20336472	CACCTGCTTCATTGTTCAG		59	NA	
Drosophila melanogaster	50	CdGAPr	FBgn0032821	FBtr0081318	1	1	1	80	2L	19778935	19779025	GACAGAACATCAACAACCAC		59	19778874	19778893	GGTTAAGGTCCAAGGATAGC		59	NA	
Drosophila melanogaster	50	CG18397	FBgn0032723	FBtr0081193	1	1	1	82	2L	18940624	18940702	AAACCGTAGTGGAATCCTG		59	18940560	18940578	TATGGTCTTGGAGAACTCG		58	NA	
Drosophila melanogaster	50	CG10343	FBgn0032703	FBtr0081098	1	1	1	90	2L	18703829	18703919	TAGGAATCTACTGCCAGCT		59	18703973	18703991	GGTATAGGTCATGCCACAG		59	NA	
Drosophila melanogaster	50	CG15161	FBgn0032692	FBtr0081078	3	1	1	60	2L	18614732	18614751	TAGAGAAGTGGATCACTGAG		57	18614691	18614710	TGGACATCGTACATTGACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5758	FBgn0032666	FBtr0081036,FBtr0081035,FBtr0081037	2	3	3	80	2L	18127999	18128020	GCAATCAGGTGTTCATTATCTC		59	18128061	18128143	TATCCTTGTGCATCTGGTG		59	NA	
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080898,FBtr0080895,FBtr0080903,FBtr0080902,FBtr0080896,FBtr0080904,FBtr0080899,FBtr0080900	1	8	13	87	2L	16779835	16780559	GTAACACAAAGGTGTTCTTCC		59	16780608	16780626	ATCCAGGACATGATCTTGC		59	NA	
Drosophila melanogaster	50	squ	FBgn0002652	FBtr0080887	3	1	1	116	2L	16680587	16680605	AACTTGTTGACAGTGTAGC		57	16680740	16680758	CCAGATCATCCTCGAACTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	grp	FBgn0011598	FBtr0080886,FBtr0080884,FBtr0080885	2	3	4	112	2L	16692023	16692042	AGGATAAGCATATCCTCCGA		59	16692117	16696595	CACGTCTGGTTCTATTCGA		59	NA	
Drosophila melanogaster	50	CG31820	FBgn0051820	FBtr0080807	3	1	1	66	2L	16006057	16006075	GTGGATCGGTATCCTATGC		59	16006009	16006028	TTATAGTTCATGGCTGGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)35Di	FBgn0001989	FBtr0080772	3	1	2	61	2L	15750554	15750575	CCTACTACTTCAAGTACAACCA		59	15750514	15750535	GTAATAGCCAACTTGAATCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16815	FBgn0032491	FBtr0080447	2	1	1	60	2L	13229807	13229826	CAGGATATCAATCTCGAAGC		57	13229849	13229867	TGATGATGTGACTCGTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31856	FBgn0051856	FBtr0080424	1	1	1	60	2L	13071767	13071788	CATCGGTATCATTATCTTCGTC		58	13071728	13071746	GGAAATGTCATTTGAGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090015,FBtr0090014	2	2	17	197	2L	12726933	12726951	TATATCAAGAGCGTTGGCA		58	12727111	12729944	ATATTTGGATAGCACTTGGC		58	NA	
Drosophila melanogaster	50	Ca-beta	FBgn0015608	FBtr0080217,FBtr0080220,FBtr0080219	2	3	4	131	2L	11163326	11163344	AACCTCTCCGTTCAAATGG		59	11163090	11163233	CCAATACGTCTCCAAGTACTC		59	NA	
Drosophila melanogaster	50	CG31867	FBgn0051867	FBtr0080224	3	1	1	60	2L	11144876	11144896	TGGATATACCTGCTAATCCTG		58	11144836	11144856	GAAGATTGAGTCTCACAACAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486	1	9	10	160	2L	10831340	10831358	GTCACAGGATTATCGGTCG		59	10826070	10830602	TCGAGCAGGAAAGAATCTC		59	NA	
Drosophila melanogaster	50	Sur	FBgn0028675	FBtr0079963	1	1	1	80	2L	10188950	10189031	AGTGTCTGTGTCATATCCC		58	10188888	10188907	GAACCATAGATACTGGAACG		57	NA	
Drosophila melanogaster	50	Pen	FBgn0011823	FBtr0079937	1	1	1	69	2L	10058759	10058854	CAGATCAACAGACTGACGT		59	10058887	10058905	TTGTGCTGTAGAAGGAGTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	bib	FBgn0000180	FBtr0079929	1	1	1	95	2L	9987720	9992265	CTTTATGGCGTAACTGTGC		59	9992324	9992342	TTCCACACCGAATCTTTCC		59	NA	
Drosophila melanogaster	50	CG3838	FBgn0032130	FBtr0079835,FBtr0079834	1	2	2	107	2L	9571709	9571727	CCACAAGTGTCTCTACGAC		59	9571886	9571965	CAATGGATCACGCTTTCTC		58	NA	
Drosophila melanogaster	50	scat	FBgn0011232	FBtr0079809	3	1	1	60	2L	9433073	9433091	TGTAGACAGCTTCAAAGTG		57	9433113	9433133	TAGTGTGAGGTTATAGTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9541	FBgn0032083	FBtr0079785	3	1	1	83	2L	8971317	8971335	CTTGGAACTCTTTCGTGAG		58	8971183	8971271	GTGTCTCCATCAACAATCTG		58	NA	
Drosophila melanogaster	50	CG13385	FBgn0032039	FBtr0079660	2	1	1	60	2L	8397271	8397290	TGTACTAACACCATTGACCA		58	8397312	8397331	CCAATGTTTCGTAAATCGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17292	FBgn0032029	FBtr0079649,FBtr0079648	2	2	2	119	2L	8372744	8372890	TATATTATGGACCCACGGTG		58	8372972	8372990	AGTAGCCGTGCAAATAGAG		59	NA	
Drosophila melanogaster	50	CG7806	FBgn0032018	FBtr0079600	1	1	1	175	2L	8315081	8315160	GAAGAAAGTCATGTTTGCCA		58	8315297	8315316	TCGCATATAGACTGACACAG		58	NA	
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567	1	8	9	163	2L	8089727	8105702	CAATCACTTGATAAGCTGGTG		59	8106857	8106875	GAAGGTACATCCGTCACAG		59	NA	
Drosophila melanogaster	50	Proct	FBgn0045038	FBtr0079562	2	1	1	186	2L	7870281	7870299	GATTTGGACAAGTTGCGTG		59	7865996	7866014	CATTAGAGTTGCCGTTGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11201	FBgn0031853	FBtr0079302	2	1	1	60	2L	6734078	6734097	CCTTCATAGAGGACTACCAG		58	6734120	6734138	TGCTCCCTTACATAGAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nhe3	FBgn0028703	FBtr0112942,FBtr0079318	2	2	3	97	2L	6680539	6680961	TATCAAGTGCACAGTTCTG		57	6680460	6680478	AAGTTCGTATCTGTTCCAC		57	NA	
Drosophila melanogaster	50	CG9523	FBgn0031812	FBtr0079257	3	1	1	163	2L	6425660	6425737	ATCCTGTCAACTATGCAGC		59	6425862	6425882	ATGATAGTACTTGCTACGCTG		59	NA	
Drosophila melanogaster	50	CG34380	FBgn0085409	FBtr0112617	3	1	1	121	2L	6203309	6203420	GGATGTTCAGGTATTTGTGC		59	6203503	6203522	TAACATCCCTTGCATGATCC		59	NA	
Drosophila melanogaster	50	hoe1	FBgn0041150	FBtr0077395,FBtr0077398,FBtr0077397,FBtr0077399,FBtr0077400,FBtr0077396	3	6	6	107	2L	4909616	4909688	TCATTCTATGGGTTTCCGC		59	4909527	4909546	GATTCAAGGTGCTATTCTGC		58	NA	
Drosophila melanogaster	50	CG15635	FBgn0031617	FBtr0077375	2	1	1	60	2L	4644973	4644991	TCACCGAATCAAATTGGAC		58	4645013	4645033	GGTATATTCCCACATTAGGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tps1	FBgn0027560	FBtr0077431	3	1	1	92	2L	4391615	4391634	CTCTGGAGATGGATGATGTG		59	4391686	4391772	GGTTATAGCCGATGTATTTCAG		58	NA	
Drosophila melanogaster	50	l(2)k16918	FBgn0021800	FBtr0077497,FBtr0077498	2	2	2	94	2L	3807048	3807142	TGGAAACTAGTGTTGCTGG		59	3807200	3807218	CTGGTCGTACATGAGATGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3213	FBgn0031545	FBtr0077561	1	1	1	60	2L	3517955	3517973	GCTCTTAGAGAACGAGCAG		59	3517913	3517931	CTGCATCTCATCCTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tim	FBgn0014396	FBtr0114526,FBtr0077564,FBtr0077567,FBtr0114527,FBtr0077566	3	5	8	81	2L	3500054	3500072	CCAGAATTCCGGACTACTG		59	3499754	3500009	TTGAGGTTGAGTTTGTCCA		58	NA	
Drosophila melanogaster	50	Chd1	FBgn0016132	FBtr0077674	3	1	1	184	2L	2980569	2980648	AATCCCGCGATAGATACAG		58	2980311	2980330	CAATCCATAGTAATTGGGCG		58	NA	
Drosophila melanogaster	50	CG31689	FBgn0031449	FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706	2	4	4	82	2L	2738712	2738730	GAGACCTTCAACAACTGGT		59	2738774	2738879	GAGAAGATGATATGGACTGGT		58	NA	
Drosophila melanogaster	50	Cyp309a1	FBgn0031432	FBtr0077749	3	1	1	131	2L	2563058	2563143	TATTTGCTTAGGTATGCGC		57	2562945	2562963	TTGAGGAAGATTCCCATCC		58	NA	
Drosophila melanogaster	50	CG17660	FBgn0031356	FBtr0077912	1	1	1	81	2L	1708393	1708471	GACTGAGGAGGAATATGGTC		58	1708331	1708349	ATGACGGAAGCGATAACAG		59	NA	
Drosophila melanogaster	50	CG3662	FBgn0031285	FBtr0100469,FBtr0078012	3	2	2	100	2L	823318	823336	CCATTATCGACACTACCAC		57	823397	823418	GCTCATCTTCTTTATGAGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GABA-B-R3	FBgn0031275	FBtr0078001	2	1	2	103	2L	756068	756676	CTATAGTGGACTGAACAATCAC		58	756740	756758	TGATCCTGGAACCATAACC		58	NA	
Drosophila melanogaster	50	CG3436	FBgn0031229	FBtr0078119	1	1	2	94	2L	156467	156485	AGAAGGACATGAGGGAGAG		59	156543	156744	GCCAGATGTAGATTTGCCT		59	NA	
Drosophila melanogaster	50	CG41293	FBgn0085602	FBtr0114046	3	1	1	190	XHet	60506	60525	CATTCTTGCTATAGCTTCCG		58	60678	60991	GTTGCAGTTGCTTCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15460	FBgn0031104	FBtr0113006	1	1	1	74	X	20261401	20261475	CAATTTGCTCATGCTGGAC		59	20261345	20261366	GAAACCGAAGTTAAATACCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12531	FBgn0031064	FBtr0074788	3	1	1	95	X	19619661	19619757	CAGAATAGATATGCGCTGG		57	19619816	19619834	GCTCAGCTTGAATATCAGG		57	NA	
Drosophila melanogaster	50	CG33639	FBgn0053639	FBtr0091616	2	1	1	60	X	18108514	18108532	CACCTGGAGCTTTATCTGG		59	18108051	18108071	GCACTAGTAACATCATTACGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7192	FBgn0030894	FBtr0074527,FBtr0074528	1	2	2	83	X	17992531	17992619	TGAATGATATACCTACACTGCC		59	17992469	17992487	ACAAGATCTGACGTTCCAG		59	NA	
Drosophila melanogaster	50	CG13002	FBgn0030804	FBtr0074343	3	1	1	78	X	16784351	16784369	AGGAGGAGATGATTTGTCC		58	16784540	16784558	TTTCTCACAAACACGTGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	r	FBgn0003189	FBtr0089734	2	1	2	143	X	16554498	16554582	GTTTCAAGCACAAGATGGAG		59	16559233	16559251	TCTTGTCGAATGTCCACTG		59	NA	
Drosophila melanogaster	50	CG1998	FBgn0030485	FBtr0073787	3	1	1	89	X	13304292	13304383	CTGCTAAAGGTGATCTGGT		58	13304221	13304239	ACGGATCTCCATTAGTCGA		59	NA	
Drosophila melanogaster	50	CG32642	FBgn0052642	FBtr0073713	1	1	1	82	X	12853507	12853527	TATAGCTACCATCCATTCTCG		58	12853571	12853672	ATGAGTTCCTTCTTTCCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fne	FBgn0086675	FBtr0073712,FBtr0113493	2	2	2	91	X	12836882	12837129	TAATTTGGTCTTGCCAGCA		59	12837243	12837264	CCCTGACGTAATTAACAAATCC		59	NA	
Drosophila melanogaster	50	CG15220	FBgn0030322	FBtr0073535	3	1	1	60	X	11509439	11509458	AACATCGACTTCGATAAGGA		58	11509398	11509419	CCTTGACATTGTTAATCAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15365	FBgn0030077	FBtr0071357	3	1	1	294	X	8950811	8951051	GAAATTTGGCAGTACCACTG		59	8950366	8950491	CTCCTTGTCTTTCTCATTGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG18262	FBgn0030012	FBtr0071158	2	1	1	85	X	8047512	8047530	AATGAAACTCACGAGGAGG		59	8047579	8047597	CATTGGAAGAGCATGTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	APC7	FBgn0029879	FBtr0070947,FBtr0070946	3	2	2	62	X	6492972	6493060	TATTACAAGGCATTGCGTC		58	6493086	6493104	CAATAAACGTAGTCCTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ubi-p5E	FBgn0086558	FBtr0070933	3	1	1	117	X	6172016	6172035	TACCATTGAGAACGTTAAGG		57	6171918	6171936	GTTGTAGTCGGACAAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ptp4E	FBgn0004368	FBtr0070725,FBtr0070724	3	2	2	95	X	4843694	4843785	CGAATTAGCTACCATGAGCA		59	4843842	4843861	GTACTCCGTAAGATTCGTGG		59	NA	
Drosophila melanogaster	50	A3-3	FBgn0028550	FBtr0070244	1	1	1	138	X	1146119	1154000	CATTTATTGATTCGATGCCG		57	1146000	1146018	GTAAGATCGATCCATCGGT		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	mus81	FBgn0040347	FBtr0070170	1	1	1	63	X	835391	835409	ACGAGACTGTTCCATTCTG		59	835436	835454	AAGTTCCTCGTCGATTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41490	FBgn0085651	FBtr0114095	1	1	1	98	U	1766133	1766210	TATTGGTACATCGAAGCGT		58	1766272	1766290	ACCTTGACTCTCAATCGAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	RfaBp	FBgn0016724	FBtr0089188	3	1	1	165	4	1093856	1093875	AAATCTCGTCAAGTTACGGA		59	1094003	1094078	TAAATAGGGTGCGTATGCC		59	NA	
Drosophila melanogaster	50	CG31998	FBgn0051998	FBtr0089145	1	1	1	86	4	224660	224678	AACGAAGCATACCAGACAC		59	222271	224612	GTGACGAGTGATATCTCTGTG		59	NA	
Drosophila melanogaster	50	bxd	FBgn0020556	FBtr0083343,FBtr0083344	1	2	4	92	3R	12571211	12571230	CAATATGCTTCGGTAATCGT		58	12570417	12571156	TGGGAAGTGATAATGTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ferrochelatase	FBgn0024891	FBtr0085849,FBtr0085851	2	2	3	95	3R	27636789	27636807	GTCAGACGAATCCCTACAG		59	27636653	27636731	TAACATAGCCCTTAATGGCA		58	NA	
Drosophila melanogaster	50	CG1971	FBgn0039881	FBtr0085847,FBtr0085848	1	2	2	60	3R	27631894	27631913	GCTTTCTAGAGAAGATTGGC		58	27631936	27631954	AAGAGCTGACTTCCTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1638	FBgn0039855	FBtr0113315	2	1	1	140	3R	27416451	27416525	AATTCCAGCTCTAATGGGC		59	27416682	27416700	CTTGAGTAGATCCTCCCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CDase	FBgn0039774	FBtr0085649,FBtr0085647,FBtr0085646,FBtr0085648,FBtr0085645	2	5	5	81	3R	26289005	26289023	TCTGCTCTATGACATCTCC		57	26289067	26289145	TTTGATGCACAGATACAGTC		57	NA	
Drosophila melanogaster	50	RpL32	FBgn0002626	FBtr0114556,FBtr0085592,FBtr0085593,FBtr0085594,FBtr0114555	1	5	5	81	3R	25871345	25871425	GATATGCTAAGCTGTCGCA		59	25871282	25871300	AGATACTGTCCCTTGAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7824	FBgn0039711	FBtr0089927,FBtr0089926	1	2	2	60	3R	25684555	25684574	AAAGGAAGGACTCTTTCTGC		59	25684514	25684533	ATCACATCCTCGAACTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cnx99A	FBgn0015622	FBtr0110909,FBtr0085438,FBtr0110908,FBtr0085437	3	4	4	132	3R	25143656	25143676	CCCTATACCATCATGTTTGGA		59	25143220	25143562	CTTCCAAACGGTTCTTTGG		59	NA	
Drosophila melanogaster	50	Hrb98DE	FBgn0001215	FBtr0085302,FBtr0085298,FBtr0085303,FBtr0085299,FBtr0085301,FBtr0085300	3	6	6	99	3R	24426823	24426844	CGACATCAACATAGTCATTGAC		59	24426904	24428498	TTGCAACACAACTTTGTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	tau	FBgn0051057	FBtr0085197	3	1	1	120	3R	23469624	23469643	ATAATGTAAAGCACAAGCCC		58	23467203	23469541	GATGGTAGTGGACTCTGTG		59	NA	
Drosophila melanogaster	50	CG31063	FBgn0051063	FBtr0085127	2	1	1	272	3R	23054035	23054053	CTTGTACAACACTTCTCGC		58	23053655	23053799	ACTCCAGATCTGTAGACCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5116	FBgn0039339	FBtr0084877	2	1	1	84	3R	21310454	21310472	CTTTATGTCCGATCTGCCA		59	21310520	21310597	GTGGACTATTACATCCGCC		59	NA	
Drosophila melanogaster	50	CHKov2	FBgn0039328	FBtr0084849	1	1	1	85	3R	21155595	21155679	TCTCTGGGCTTTCATATGC		59	21155528	21155548	CCATTACGTTGCCTATATGTG		58	NA	
Drosophila melanogaster	50	CG31102	FBgn0051102	FBtr0084862	3	1	1	139	3R	21119990	21120084	GATCACGAACAGTATCCCA		58	21119869	21119889	CCAGTTTGAGTATAGCTTAGC		58	NA	
Drosophila melanogaster	50	CG13663	FBgn0039291	FBtr0084873	3	1	1	61	3R	21040757	21040775	GGAGATTCTGGATGTTGGG		59	21040652	21040735	TACCTGTTGTACCTCTATTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fd96Cb	FBgn0004898	FBtr0084771	2	1	1	60	3R	20920983	20921001	ATTCTACCGGAAGAACACG		59	20921025	20921043	GTTGAAGCTGAGATTGTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31115	FBgn0051115	FBtr0084757	2	1	1	60	3R	20863483	20863501	CTGATAACGGCTATTCGGA		58	20863523	20863543	TTGCCTTTAGAATATCCTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13631	FBgn0040600	FBtr0084693	3	1	1	68	3R	20595636	20595654	ATGACACAAAGAATTCGCG		59	20595686	20595704	TGGAATCTTGGGAACTACG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	SMC1	FBgn0040283	FBtr0084541	3	1	1	92	3R	19886026	19886109	GTATTCAGATCTTGAAGGAGC		58	19886163	19886181	TACGAAGTCGTTCCTTCAG		59	NA	
Drosophila melanogaster	50	sec13	FBgn0024509	FBtr0084409	2	1	1	164	3R	19182661	19183125	GATTGGACTAAGCTCTACGA		58	19183252	19183270	TATCTTCTTGGCATCCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4656	FBgn0039055	FBtr0084407	1	1	1	131	3R	18942727	18942814	TCCAAACTTAAGGTCTACAACC		59	18942617	18942635	GAGATGAATCACTCCCTGC		59	NA	
Drosophila melanogaster	50	CG17244	FBgn0039031	FBtr0084340	3	1	1	131	3R	18803188	18803207	CAATATTCCCGAAATCCCGA		59	18803301	18803319	CTGGTCTGGTTATTGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6969	FBgn0039005	FBtr0084303	3	1	1	107	3R	18523289	18523367	TTCACCAAAGCTCAATTGG		58	18523438	18523456	CAGTCTCTGCATAACATGC		58	NA	
Drosophila melanogaster	50	CG18594	FBgn0038973	FBtr0084255	2	1	1	65	3R	18292248	18292266	ATCCAGAAGTACAGCTTCG		59	18292295	18292313	GTAGTCATCGTATTGGGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nop56	FBgn0038964	FBtr0084230	3	1	1	105	3R	18246118	18246136	GATTCCACTTCGCTAAGCT		59	18245966	18245984	ACATTGAACTTGACCTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6560	FBgn0038916	FBtr0084151	3	1	1	68	3R	17712055	17712073	AGGATTGGATAATGCTGGC		59	17711942	17712023	GTTACCGTGGTTATGTCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6569	FBgn0038909	FBtr0084156,FBtr0084155	3	2	3	60	3R	17692524	17692545	CATCTGAAGAATATGCTCAAGC		59	17692428	17692503	TCAGCTTCTCCTTTATGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5871	FBgn0038870	FBtr0084050	2	1	1	92	3R	17046821	17046906	ATGTGCATAGTATGCATGTG		58	17046960	17046979	TAGTCCTATCAGACTGAGCT		58	NA	
Drosophila melanogaster	50	Mvl	FBgn0011672	FBtr0089521,FBtr0089522,FBtr0089523	3	3	3	82	3R	16882560	16883306	GGCTATGAGTACATTGTATCAG		58	16882499	16882517	GAATTGCAGTTAGAGCACC		58	NA	
Drosophila melanogaster	50	CG17274	FBgn0038835	FBtr0083989,FBtr0083990	3	2	2	166	3R	16678290	16678432	CTTTGTTACAACAGGGAGG		57	16678142	16678161	TTGATTCAAATAGTCCACGC		58	NA	
Drosophila melanogaster	50	CG17838	FBgn0038826	FBtr0083962,FBtr0113256,FBtr0113255,FBtr0083959,FBtr0083960,FBtr0083963,FBtr0083958,FBtr0083961	2	8	8	134	3R	16622986	16623073	CAGGAAGAATTAAGGTTTGGG		58	16623169	16623187	TATCCTCTGAGACGTCCTG		59	NA	
Drosophila melanogaster	50	CG15685	FBgn0038789	FBtr0113253	3	1	1	92	3R	16169211	16169229	AGAGGCTGGATCTTAATGC		59	16169283	16169432	GTCAATGAACTCTAGTTCCCA		59	NA	
Drosophila melanogaster	50	CG17190	FBgn0038761	FBtr0083845	3	1	1	67	3R	15837892	15837910	CTGATAAACACAGTTGGCG		59	15837843	15837861	ATCAGCCGATGAGTATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4538	FBgn0038745	FBtr0083855,FBtr0083856	3	2	2	92	3R	15725521	15725606	GCTCTATAATGGAACAACTGC		59	15725449	15725467	CTTTAACATAGTCGGCGGT		59	NA	
Drosophila melanogaster	50	vib	FBgn0026158	FBtr0083745	3	1	1	91	3R	15045341	15051748	GATCAAAGAATTCCGTGTGAC		59	15045190	15045208	TATTCTCCTTTGACGCCTC		59	NA	
Drosophila melanogaster	50	CG6026	FBgn0038676	FBtr0083715	2	1	1	264	3R	14867812	14867894	AACCATTGAAATTCCCTGC		58	14868122	14868140	TTTAAGGCAGGTGGATGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18598	FBgn0038589	FBtr0083569	1	1	1	118	3R	14076900	14076918	GTTTGGACAACTACAAGGC		58	14077000	14077083	CTTGTCCTTTAGCAGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7357	FBgn0038551	FBtr0083524	2	1	1	85	3R	13633814	13633832	CAAACGATTCAACAGCGAG		59	13633690	13633765	ATGTGAGGCAGATATGGAC		58	NA	
Drosophila melanogaster	50	CG5285	FBgn0038490	FBtr0083409	2	1	1	120	3R	12976689	12976768	AATTCCCTTTGGCAATGTG		58	12976852	12976870	CTCCTCAATCCGACAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5255	FBgn0038485	FBtr0083406	3	1	1	66	3R	12964332	12964409	GGATATCCAGATGCTCACG		59	12964439	12964457	ATAGACTTAGGTGAGTGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3678	FBgn0038461	FBtr0083376	1	1	1	80	3R	12816556	12816636	TACGATACACAATGGGTGG		59	12816494	12816513	TATGCGGATTAAGCTTCAGG		59	NA	Nonspecific
Drosophila melanogaster	50	nonA-l	FBgn0015520	FBtr0083335	3	1	1	60	3R	12466565	12466583	GAATCAGAATGCCAACCAG		58	12466606	12466625	TTTATTGTCTCCTTGGTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12783	FBgn0038448	FBtr0089666	1	1	1	125	3R	12437937	12437955	AAACCGTTGCAATATGAGG		58	12437760	12437848	AAGGAGTCACTACAGACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gyc-89Db	FBgn0038436	FBtr0083294	2	1	1	61	3R	12305285	12305303	AGAAGATTGTCGAGACGTG		59	12305328	12305346	GCCAATAAAGGTCTTTGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10407	FBgn0038395	FBtr0083237	3	1	1	89	3R	11871083	11871101	TATGGAATCGGACTACAGC		58	11870873	11870952	GTGATGTTAACGAGATCCAC		58	NA	
Drosophila melanogaster	50	CG31183	FBgn0051183	FBtr0083187	3	1	1	100	3R	11688528	11688713	CGATAATTCACTTCCTGGGT		59	11688447	11688465	CGATGTAGTGACGATAGCC		59	NA	
Drosophila melanogaster	50	CG8461	FBgn0038235	FBtr0082986	1	1	1	137	3R	10338543	10338616	ATCTGACAAAGAAGGAGCG		59	10338424	10338442	CTATACCAATGCGTTTGCG		59	NA	
Drosophila melanogaster	50	cv-c	FBgn0086901	FBtr0112632,FBtr0112630,FBtr0112631	1	3	3	80	3R	10221737	10225449	TGTACGAAGATCATCAGTTCC		59	10221677	10221695	ACTGCAACTGATCGTTCTC		59	NA	
Drosophila melanogaster	50	CG14376	FBgn0038153	FBtr0082784	2	1	1	111	3R	9248179	9248198	ACGTAGTTCCTATCAGATCC		58	9248271	9248343	CTTGAAGATCTCACCATCCT		58	NA	
Drosophila melanogaster	50	CG9813	FBgn0038143	FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767	3	6	6	149	3R	9200197	9200215	CACCTTCTGGAACAAACTC		58	9199920	9200008	GCAAACATTACCTTTGCCA		59	NA	
Drosophila melanogaster	50	Osi22	FBgn0038133	FBtr0082738	3	1	1	60	3R	9117096	9117176	ATAATAGTGAAGAAGGTCGC		57	9117198	9117217	AAGAGTGGTAAGACTTTGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Arp87C	FBgn0011745	FBtr0082652	2	1	1	87	3R	8519470	8519556	ATCTCAAGATCAGGATCGC		58	8519607	8519625	TTGAAAGTATCGAGCGAGG		59	NA	
Drosophila melanogaster	50	CG3313	FBgn0037980	FBtr0082555	2	1	1	82	3R	7841241	7841259	GAGCCGGAAAGTATTTGGA		59	7841113	7841195	CTCCGGATACACAATTCCT		58	NA	
Drosophila melanogaster	50	CG34302	FBgn0085331	FBtr0112498	3	1	1	60	3R	5648961	5648982	GAAGTCAATGAGGACTATTGGA		59	5648922	5648940	GAAACATCAGCATGTCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12947	FBgn0037753	FBtr0113213,FBtr0113212	3	2	2	62	3R	5607613	5607631	AGTACAACTAGTCGAAGCG		59	5607657	5607675	AAAGGGTCCATCTGTAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mcm2	FBgn0014861	FBtr0081827	3	1	1	114	3R	4092952	4093027	CAAGCTAACGAACATCGAC		58	4093104	4093123	GATGACACTCTCAATGTGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rm62	FBgn0003261	FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653	3	6	6	156	3R	1829624	1829748	AGGAGGAGAAATTGAAGACC		59	1829487	1829505	TTGTCACCGTGAATAGCTC		59	NA	
Drosophila melanogaster	50	CG11373	FBgn0040679	FBtr0078657	3	1	1	129	3R	1786221	1786523	GCACACGATAGGATTTGGA		59	1786059	1786078	TTTAGACGTCAAAGAATCCG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078673,FBtr0078676	2	2	5	85	3R	1587422	1587894	GTTCATTAGCTGGAAGAGC		58	1586952	1587374	TACATACCCAGTTATGTCCG		58	NA	
Drosophila melanogaster	50	CG9769	FBgn0037270	FBtr0078892	2	1	1	60	3R	539106	539124	GCTAGACCTTATCCACTCC		58	539064	539084	GTTGAACATCTGAGTGAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MED31	FBgn0037262	FBtr0078856,FBtr0078857	1	2	2	80	3R	468366	468479	CCAACTATCTAAACTTCCTTGC		59	468519	468538	AGTACTGCAGATACTTCAGG		58	NA	
Drosophila melanogaster	50	CG40402	FBgn0058402	FBtr0111156	1	1	1	72	3L	24284012	24284030	CTCAGCACTACCTTGTACC		59	24283958	24283976	CCAGTCGACTGTCTAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17698	FBgn0040056	FBtr0111168,FBtr0111167,FBtr0111166	2	3	3	84	3L	23741153	23741252	CTGGACAGAACGAATATTGTG		59	23741295	23741316	GGCACATTTCCGAATATTAAGG		59	NA	
Drosophila melanogaster	50	slif	FBgn0037203	FBtr0078555,FBtr0078556,FBtr0078557	2	3	3	83	3L	22885584	22885671	GAATCTTTGCGTCCATAATGG		59	22885716	22885734	TGTATGCTAACAGGGTTCC		58	NA	
Drosophila melanogaster	50	SPoCk	FBgn0052451	FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532	3	4	4	90	3L	22771851	22771869	TGAAATGTTGATGCAGAGC		58	22771923	22776536	GATACCGATGAGATTCGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	msopa	FBgn0004414	FBtr0078482	1	1	1	214	3L	22075936	22075954	AACTTCATACAGATCGCCG		59	22076132	22076150	TTCTTTCTACCGGAACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hr78	FBgn0015239	FBtr0078392,FBtr0078390,FBtr0078389,FBtr0078391	2	4	4	80	3L	21488570	21488706	GACATTGATGTTCGCTACC		58	21488508	21488527	GGAATATCTGGCGAATAGCT		59	NA	
Drosophila melanogaster	50	Syx7	FBgn0086377	FBtr0078352,FBtr0078351	3	2	2	142	3L	21439416	21439434	TAGATTTCCAAAGGCTGGC		59	21439607	21439975	CATTATTTGGTGGAGCTGC		59	NA	
Drosophila melanogaster	50	CG14185	FBgn0036936	FBtr0074818	1	1	1	294	3L	20099876	20099894	GATGGAAACATGATCCAGC		58	20100152	20100170	ACTCCAGATCACTTGATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14103	FBgn0036908	FBtr0074927	3	1	1	224	3L	19797323	19797396	CTAAATGAAATTGCGCCGA		59	19797117	19797136	CACCTGATCAGTAACTCGAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	st	FBgn0003515	FBtr0075391	1	1	1	80	3L	16493263	16493341	GAATATAACCTGCTTTCAGGAG		58	16493382	16493400	TTGAAGCTGTACTTGTCCA		58	NA	
Drosophila melanogaster	50	CG33158	FBgn0053158	FBtr0075390	1	1	1	223	3L	16415718	16415736	CAATATTGTGGTCAACGCC		59	16478713	16484619	TATCAATCACCTCCCAGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG5931	FBgn0036548	FBtr0075527	3	1	1	80	3L	15959954	15960029	TGCATGCAGAGAATCTAGC		59	15959892	15959911	CATCTATGTCCAGAGGATGC		59	NA	
Drosophila melanogaster	50	CG13461	FBgn0036468	FBtr0075664	1	1	1	60	3L	15045317	15045336	AGATAATGAATCAAGCGGAG		57	15045276	15045296	TTCGGTATTATCATCAGACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100042,FBtr0100039,FBtr0100040	2	3	6	108	3L	14206204	14206223	ATCGAGCTTTAACTCATCGG		59	14206293	14223284	CAGTTCCAGCCTATAATCGT		59	NA	
Drosophila melanogaster	50	Gl	FBgn0001108	FBtr0075756	2	1	1	60	3L	13922768	13922789	CTAGCTAAGACGTGATTATTGG		58	13922810	13922892	GTACTTATGATTGTGCGCT		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG13737	FBgn0036382	FBtr0075754,FBtr0075755	2	2	2	63	3L	13875756	13875774	TGGAGACCTATTTGACGGA		59	13875801	13875819	CTGTTGGGCTCAAATTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33262	FBgn0053262	FBtr0075826	3	1	1	62	3L	13129446	13129464	ACACTCCAGATCTAAACGT		57	13129489	13129565	ATAAACTGGTGCCTTGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11262	FBgn0036329	FBtr0075872	1	1	1	60	3L	12989102	12989121	CCTCGGTATGATGATACTGG		59	12989143	12989162	AGCCATCCAATCAAATACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10681	FBgn0036291	FBtr0075957	3	1	1	122	3L	12494979	12494997	CATTCAAAGTCTCGCAGGA		59	12495138	12495157	GATAAGGCATTGCAGTTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32104	FBgn0052104	FBtr0075986	3	1	1	80	3L	12391001	12391088	CTATTTCGATTAGCCAGATCCA		59	12390942	12390962	ATAGATGCTAAAGATCCCAGC		59	NA	
Drosophila melanogaster	50	rols	FBgn0041096	FBtr0076054,FBtr0076055,FBtr0076057,FBtr0076053,FBtr0076056	3	5	5	80	3L	12001905	12001986	AACTGAATGAACTTGACGC		58	12001843	12001861	CGTAGTATCCTTCGTAGCT		57	NA	
Drosophila melanogaster	50	Sug	FBgn0036191	FBtr0076109	3	1	2	94	3L	11680623	11680642	CATGGGATTTGATGTGTTCG		59	11680762	11680780	AGAGAAACATCTGACCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	vsg	FBgn0045823	FBtr0076401	2	1	4	182	3L	9707708	9708846	AATTTGTGCGAAGAAGCAG		59	9708992	9709010	GGTCTTCTCAGTCGATGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3088	FBgn0036015	FBtr0076421	2	1	1	60	3L	9593689	9593707	ATTTGCTAGGATCACCAGC		59	9593647	9593665	TTAGTAGGCGATTCCAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rhea	FBgn0020254	FBtr0076627	1	1	1	80	3L	8555114	8555135	GTAAGATTATGGAGAAGGATCG		57	8555176	8555253	CCCAGTTCATTTCATCGTC		58	NA	
Drosophila melanogaster	50	ergic53	FBgn0035909	FBtr0076626,FBtr0076625	2	2	2	123	3L	8529703	8529721	ATGAATCAGGTCAAGCAGG		59	8530054	8530073	TTACGCTTAGGAACAATGTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	mtrm	FBgn0010431	FBtr0076613	1	1	1	60	3L	8406520	8406539	GAGCGAGAAATAAAGAGCTG		58	8406561	8406580	TCTCCATATTCGAGTCATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mkg-p	FBgn0035889	FBtr0076664	1	1	2	93	3L	8397147	8397217	GTTTAGCACTGAAGGAGAG		57	8397072	8397091	GAGGTCTTGTTGTATAGCTG		57	NA	Nonspecific
Drosophila melanogaster	50	CG17352	FBgn0035880	FBtr0076675,FBtr0076676,FBtr0100664,FBtr0113154,FBtr0076674	3	5	5	200	3L	8349038	8349119	ACTACTGCCTATAGAAGCTC		58	8348857	8348875	CGAGAACTGGATATGCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34461	FBgn0085490	FBtr0112767	2	1	1	152	3L	8319405	8319423	ACTACGGCATTAAGGATCC		58	8319996	8320014	CATTGAAGCCATTGTGGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7197	FBgn0035866	FBtr0076715	3	1	1	61	3L	8292008	8292026	TCTATGCCAATAAGCAGGA		58	8291965	8291983	CAGTTGTCGTGAGATTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13675	FBgn0035845	FBtr0113152	2	1	1	80	3L	8154325	8154343	GGATCAGAGCAACTCTACC		59	8154176	8154281	TTGCTGTTGATCATTCAGC		58	NA	
Drosophila melanogaster	50	Ect4	FBgn0085402	FBtr0112598,FBtr0112601,FBtr0112602,FBtr0112600	2	4	5	86	3L	8092629	8096003	TCATTAAGGAAGCCCTCTC		58	8096053	8096071	TTTGCACCGTAATACTGGA		58	NA	
Drosophila melanogaster	50	CG32377	FBgn0052377	FBtr0076820	3	1	1	60	3L	7661985	7662005	GGTTTGTCTAGCATATGTCTC		58	7661945	7661964	AGGTTGTAATTTCCTCTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32389	FBgn0052389	FBtr0076921	3	1	1	60	3L	7156002	7156023	CGGAAATCTGAAATCCATATCG		59	7155963	7155981	TATGTGGCACTGTATGGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10478	FBgn0035657	FBtr0077069	3	1	1	144	3L	6003671	6003756	ATTTAATTGCGAAGGCTGG		58	6003545	6003566	CCGTGTCTTATGATATAGTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rpd3	FBgn0015805	FBtr0073317	2	1	1	124	3L	4627519	4627616	AAATGGAAATATACCGTCCC		57	4627703	4627721	CATCTGCTTGTTGTACTCC		58	NA	Nonspecific
Drosophila melanogaster	50	CG15005	FBgn0035508	FBtr0073255	1	1	1	60	3L	4202887	4202908	GACTTTAAGATACCCACTTCCA		59	4202848	4202868	GATTGTAGAAGTCCAGATCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	scrt	FBgn0004880	FBtr0073165	2	1	1	86	3L	3985478	3986530	AATGTTTACAACGGCTACAC		58	3986579	3986597	GATCACGGTTATCTCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1079	FBgn0026592	FBtr0073157	1	1	1	80	3L	3894049	3894067	CTACGCACCATGAATAAGC		58	3894111	3894183	GAAACGATAGGGTATGGCT		58	NA	
Drosophila melanogaster	50	Drs-l	FBgn0052274	FBtr0073081	3	1	1	84	3L	3335758	3335776	TTCCTAATTGTCCTGTCCG		58	3335692	3335710	TATATCTTCCGGAAAGGCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34022	FBgn0054022	FBtr0100077	2	1	1	60	3L	1206131	1206149	AACTCCAGGTTCAATACCC		58	1206173	1206191	TCTGCAGACAGTATTCCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13887	FBgn0035165	FBtr0072583,FBtr0072584	1	2	2	61	3L	838571	838589	AACAAGAACACCGAGAAGG		59	838614	839257	TTGTTGAGCTCGATGAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33229	FBgn0053229	FBtr0072499	1	1	1	194	3L	224470	224488	ATTCAAACACGGTTTGTGC		59	224646	224664	GTTGTTGCATGTGTCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yki	FBgn0034970	FBtr0072183,FBtr0072184	1	2	3	121	2R	19954726	19954744	CAGAATCCAATATCGCCAG		58	19953691	19953792	TATCCTCAATCTGGAGGGA		58	NA	
Drosophila melanogaster	50	CG4324	FBgn0034956	FBtr0114534,FBtr0072197	2	2	2	116	2R	19903818	19903839	GTACTACTAGTGCTGTATAGCA		58	19903663	19903741	CAAGGTAACTGACTGTGGA		58	NA	
Drosophila melanogaster	50	Gr59d	FBgn0041236	FBtr0071976	3	1	1	60	2R	18992336	18992355	GACTGTATCAGAGAAATCCG		57	18992295	18992313	AATTTGCTAACGATGCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33143	FBgn0053143	FBtr0071858	3	1	2	60	2R	18509762	18509780	CCCATCGAGAAGTACATCG		59	18509803	18515321	CCTGTACAACCCTGTAACTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	wdp	FBgn0034718	FBtr0071849,FBtr0071852,FBtr0071851	1	3	4	133	2R	18188505	18195724	GTCTTATAGAAGATAAGACGCC		57	18188393	18188411	CAACCACAATGAGGAACAG		58	NA	InUTR
Drosophila melanogaster	50	PpN58A	FBgn0025573	FBtr0071734	1	1	1	60	2R	17769641	17769659	GTGTATCTGCTACTGGGTG		59	17769599	17769617	GGGTCAATGTTTCGATGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sara	FBgn0026369	FBtr0071641,FBtr0071642	1	2	2	80	2R	17372489	17372573	GGTCAAGATTGTTAACATGAGC		59	17372613	17372632	CTGCCCATATGATGTAGTCC		59	NA	
Drosophila melanogaster	50	CG9752	FBgn0034614	FBtr0071616	2	1	1	61	2R	17182200	17182218	AGTTTGGAGTACACCAGTG		59	17182157	17182177	CCGTTCTCCAGAATAGTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)05510	FBgn0028622	FBtr0086258	1	1	1	73	2R	16451345	16451363	CAAGGTCTACGAGATCTCG		58	16451217	16451308	GGACCTCATTCTTGTTGAC		58	NA	DesignRelaxed
Drosophila melanogaster	50	RpL11	FBgn0013325	FBtr0086533	2	1	1	60	2R	15330559	15330577	TCGGTATCTATGGTCTGGA		58	15330601	15330833	TGGTTCACATTGTAGCCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG15109	FBgn0034416	FBtr0086576,FBtr0086574,FBtr0100137	1	3	4	60	2R	14947719	14947738	CCCAATCTTAATCCCAATCC		57	14947761	14947779	CCAGCTTGTTGTAGTACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	grh	FBgn0004586	FBtr0090009,FBtr0090012,FBtr0090011,FBtr0090008,FBtr0090007,FBtr0090010	2	6	6	163	2R	13726937	13727109	ATGCAGACCGATAAGAAGG		59	13727236	13727254	AACGGTGTATACACCTCCT		59	NA	
Drosophila melanogaster	50	CG34194	FBgn0085223	FBtr0112387	3	1	1	88	2R	13432116	13432335	GTCTTCCTCAATGTCCTCC		59	13432387	13432405	AAGACGGTGACACAATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4802	FBgn0034215	FBtr0086916	1	1	1	86	2R	13316436	13316513	ACTAAATGCCAAGCAATGC		59	13316562	13316581	TCTTCTGTTATTTCGTGGCA		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Amy-d	FBgn0000078	FBtr0086983	1	1	1	116	2R	13013722	13013740	CTTCCATCTACATTGGCAG		57	13013820	13013838	ATCTCAAGTAATTGCTCGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG30091	FBgn0050091	FBtr0087277	3	1	1	85	2R	11569234	11569323	CGAAAGTACGGCATTAAAGG		59	11569371	11569389	CGAATTTGGGATGCTTGTG		59	NA	
Drosophila melanogaster	50	CG11807	FBgn0033996	FBtr0087363	1	1	1	93	2R	11089550	11089568	TACAAGATCTTGCCAAGCT		58	11089625	11090537	ATAGCGTAGACCTCTAGGG		59	NA	
Drosophila melanogaster	50	CG12866	FBgn0033955	FBtr0087434	2	1	1	81	2R	10558082	10558161	GATCGGATAAGAACACCCA		58	10558204	10558224	ACTCTAGAAATCCTATCGGGT		59	NA	
Drosophila melanogaster	50	CG17048	FBgn0033828	FBtr0087721	3	1	1	117	2R	9241633	9241651	GTTTAGCACTGTACAGGGA		58	9241384	9241552	AATAGACGCCAGTTATCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30048	FBgn0050048	FBtr0100374	1	1	2	102	2R	8283471	8283542	GAACATATCGTCGGTTTCG		58	8283608	8283626	ATTGGGATTGCCATCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8501	FBgn0033724	FBtr0087915	2	1	1	60	2R	8271745	8271764	GGAAGGATGAATTGCAACTG		59	8271787	8271805	TTGGTGTCGAATGACTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13163	FBgn0033712	FBtr0087896	3	1	1	101	2R	8209153	8209232	CAAACTAGTCACAGCTGCT		59	8209297	8209315	ATGGTAAGGGATTTCTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SmD3	FBgn0023167	FBtr0087986	1	1	1	60	2R	8056581	8056601	AGATCCGATTCCTTATACTGC		59	8056623	8056641	GTCTGCTTCTTGAACATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr47Ee	FBgn0033602	FBtr0088114	2	1	1	106	2R	7153178	7153196	TTCTCCTACGGATACTCGT		59	7153266	7153629	GATCCCTGAATCACCTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or47a	FBgn0026386	FBtr0088111	3	1	1	60	2R	7139096	7139185	CTTCTCATCGATTGTTCGC		58	7139208	7139227	TTAGGAGAATGATCTCAGCA		57	NA	DesignRelaxed
Drosophila melanogaster	50	Obp47a	FBgn0033573	FBtr0088200	3	1	2	61	2R	6797429	6797447	TGAATCGAGTTCTAGTGCT		57	6797470	6797570	GATGTTTATCTCGCTCAAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab3	FBgn0005586	FBtr0088257	2	1	1	89	2R	6611871	6612327	TGAAACTCCAGATCTGGGA		59	6611800	6611818	TTAGGATGAAACCCATCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Or46a	FBgn0026388	FBtr0088331	2	1	2	93	2R	6029334	6029352	TGTCCTTCTCATGATGCAG		59	6029409	6029488	GATAGAACCAAAGGCCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mef2	FBgn0011656	FBtr0088444,FBtr0088443,FBtr0088447,FBtr0088445,FBtr0088446	1	5	6	88	2R	5806136	5806224	ATGCAGATCAACGACAGAG		59	5806066	5806084	AAAGGAATAGCTCGTGAGG		59	NA	
Drosophila melanogaster	50	CG8229	FBgn0033356	FBtr0088673	1	1	2	284	2R	4837415	4837433	AAGTGTGAGGATGTCTCCT		59	4836245	4836265	CTATAGCTCCATTCTAGAGCT		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG30359	FBgn0050359	FBtr0088749	3	1	1	89	2R	4351066	4351141	GGAGACCATGAGTAACGTC		59	4351194	4351212	GCTATTTCGAACACATGGG		58	NA	
Drosophila melanogaster	50	CG30374	FBgn0050374	FBtr0088810	2	1	1	60	2R	4045255	4045275	ATACCTGGAGTCTACATTTGC		59	4045215	4045234	TTGAAGAGGTAAGCAGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7861	FBgn0033055	FBtr0085974,FBtr0085973	1	2	2	60	2R	1931052	1931070	TAACCAACCTGAACCTGAG		58	1931143	1931161	TCAGTGATTTGGGATGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	tRNA:CR31943	FBgn0051943	FBtr0077818	1	1	1	60	2L	2009162	2009181	TGGTGTAATGGTTAGCACTC		59	2009204	2009222	TCCACCGAGATTTGAACTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	lt	FBgn0002566	FBtr0111123,FBtr0111125,FBtr0111124	2	3	3	80	2L	22832738	22832817	CATAGTTGACTACTTTAGCCC		57	22832858	22832877	AGTGATTGTCGAAGATTTGG		58	NA	
Drosophila melanogaster	50	His4:CG33869	FBgn0053869	FBtr0091873	1	1	1	60	2L	21534187	21534205	GAACGTAATTCGTGATGCC		59	21534145	21534163	GGCTGTAACTGTCTTCCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	His3:CG33824	FBgn0053824	FBtr0091828	1	1	1	60	2L	21469920	21469938	TCGAAGATACCAACTTGTG		57	21469962	21469980	ATGTCTTTGGGCATTATGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10947	FBgn0032857	FBtr0081368,FBtr0081369,FBtr0081370	2	3	3	60	2L	20387005	20387024	GAGAACTGGTACAAATACCG		57	20386964	20386982	GGATGTTCACCGAGTACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	La	FBgn0011638	FBtr0081373	3	1	2	108	2L	20349027	20349045	TACATTGAGTTCGCCAAGG		59	20348866	20348955	CTTTGAACTTGAGCTTGCC		59	NA	Nonspecific
Drosophila melanogaster	50	CG17571	FBgn0032947	FBtr0081376	1	1	1	84	2L	20256406	20256424	GAAGGTGGAGGTTGATCTG		59	20256340	20256358	CATGGTCTCCAGAATCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10680	FBgn0032836	FBtr0081303	3	1	1	164	2L	19964560	19964581	TAACGATGTCGAGTTTCTAGAG		59	19964768	19964850	TAGTTGGGTTGACGAATGG		59	NA	
Drosophila melanogaster	50	CG13086	FBgn0032770	FBtr0081197	1	1	1	60	2L	19364459	19364477	CCTATGGTTCCTGATCGAG		58	19364501	19364519	CTCATAGGGATTCCTGCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15143	FBgn0032647	FBtr0080993	1	1	1	83	2L	17523938	17524017	ACGCTTTACAGAGAATCCT		58	17523873	17523891	CAGTTCCAAGGTTTCAACG		59	NA	
Drosophila melanogaster	50	CG5110	FBgn0032642	FBtr0080983	1	1	1	60	2L	17481631	17481651	ATGTACTCCAATTACCAGGTG		59	17481673	17481691	CCACAAAGGTCAGGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33928	FBgn0053928	FBtr0091932	2	1	1	85	2L	17436046	17436124	CCATTCTTGTCCCTATACAC		57	17435980	17436001	GCGGTACGTATTTAGTAAACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15134	FBgn0032621	FBtr0080949,FBtr0114502	2	2	2	83	2L	16904394	16904471	TAAGACAGGGAATCATTGTG		57	16904517	16904535	TGTTCTTGTACTGATGCTC		57	NA	
Drosophila melanogaster	50	CG4587	FBgn0028863	FBtr0112944,FBtr0112943	1	2	2	80	2L	15650698	15650779	TTCGCGTAACAATGTTACC		58	15650636	15650657	CTATTGTACTCACAATACACCC		58	NA	
Drosophila melanogaster	50	kuz	FBgn0015954	FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660	1	5	5	86	2L	13634172	13634250	ACCTACAGAGATTTCACTGG		58	13634298	13634317	GTACTTCTCGCAAATTCCAC		59	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020	3	17	17	87	2L	12723993	12724013	AAGACCTATCAGATCAGACAG		58	12724062	12724215	ATTTGAGCACCTTAATGCC		58	NA	
Drosophila melanogaster	50	CG31763	FBgn0051763	FBtr0080356	2	1	1	184	2L	12373889	12373908	TACAACAAACTAAGCTCGGG		59	12374055	12374073	CAATACGTTGCCGTTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4988	FBgn0032372	FBtr0080254	2	1	1	97	2L	11695110	11695128	CTATATGGGTGGTACCCTG		58	11695189	11695293	CCTCAACGTTCCTAGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trim9	FBgn0051721	FBtr0080096	3	1	1	85	2L	10620160	10620308	GATCAGGATACTCAAGGACC		58	10620356	10620374	GAGCTTCAATGCAGAACTG		59	NA	
Drosophila melanogaster	50	RnrL	FBgn0011703	FBtr0080059	2	1	1	109	2L	10327443	10327695	GTTGATCCTGTTACTATCACC		57	10327354	10327372	TTGCATGTTAATCCAGCTG		58	NA	
Drosophila melanogaster	50	CG5727	FBgn0032193	FBtr0079958	3	1	1	94	2L	10210151	10210226	AGTACACTCAGAGGAAGAC		57	10210075	10210093	CCATCCTAAAGAACTCCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33301	FBgn0053301	FBtr0079935	1	1	1	60	2L	10049949	10049967	AAACTAACTGCAGATGCCA		59	10049990	10050009	AATCCTCCAGAATCATGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33298	FBgn0032120	FBtr0089853,FBtr0089854	3	2	2	80	2L	9518546	9518631	CTATAAGAATGCTGCCTTTGTC		59	9518672	9518690	TGATCCATCATCACTTGGC		59	NA	
Drosophila melanogaster	50	CG9515	FBgn0032077	FBtr0079791	3	1	1	80	2L	8942553	8942572	ACGTATACTTTGGCGATCTG		59	8942436	8942511	AAGCACCAGCTTTATCTAGG		59	NA	Nonspecific
Drosophila melanogaster	50	Pvr	FBgn0032006	FBtr0079629,FBtr0079628,FBtr0079625,FBtr0079627,FBtr0079630,FBtr0079626	2	6	6	82	2L	8226138	8226224	GGATTAAGGTGCTAAAGCA		57	8226074	8226092	ATTGGCATATTCCTGAACG		57	NA	
Drosophila melanogaster	50	CG18585	FBgn0031929	FBtr0079516	3	1	1	83	2L	7690549	7690693	AATGTCCAAGAGCGTATCG		59	7690484	7690502	CAGCTCGTAGTACTTCGTC		59	NA	
Drosophila melanogaster	50	CG5261	FBgn0031912	FBtr0079445,FBtr0079444	2	2	2	104	2L	7428203	7428285	TAAGCTCAACGAAGGTGAC		59	7428352	7428371	CCCTGGATGAGAATCTTAGC		59	NA	
Drosophila melanogaster	50	neuroligin	FBgn0031866	FBtr0079344	3	1	1	80	2L	6904449	6904528	GTGGAATTGGGAAACAAGG		58	6904570	6904590	CTGAGGAATAAGGTTCAACCA		59	NA	
Drosophila melanogaster	50	Ent2	FBgn0026585	FBtr0079290	2	1	1	60	2L	6562867	6562888	CGTGTTCTTTATATTCCTGCTG		59	6562909	6562927	GATGAACATGTTCCATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13999	FBgn0031753	FBtr0079150	1	1	1	116	2L	5955793	5955811	CTGATTGCCCTATCAGTGG		59	5955638	5955656	GATCCAGTCAAGATGCTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Cap-D3	FBgn0051989	FBtr0079097	2	1	1	88	2L	5533734	5533813	CATAGTAACACCCAGACTGG		59	5533864	5533882	ACAGGAATAGCAGCAATCC		59	NA	
Drosophila melanogaster	50	CG15626	FBgn0031635	FBtr0077412	3	1	2	157	2L	4837525	4837611	GGCGATAAAGAACATCACC		58	4837386	4837404	GTTCGTAACGATCCTTGTC		58	NA	
Drosophila melanogaster	50	CG10039	FBgn0031581	FBtr0077507	1	1	1	60	2L	4007892	4008752	ACTACATTTGTACCATGCGA		59	4008775	4008793	ATGGATTCGCGTAGTAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31777	FBgn0051777	FBtr0077542	1	1	1	64	2L	3706784	3706934	CCTTCAATACCCAGTATTTGC		59	3706740	3706758	ATATCAATGGCACAAACGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31698	FBgn0051698	FBtr0077612	1	1	1	79	2L	3173531	3173550	CTACTTCGTATGCAAGTCAG		58	3173404	3173489	AAAGAAGACGGGCATATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12400	FBgn0031505	FBtr0077617	1	1	1	142	2L	3145369	3145387	GAAGAGGAACGAGTACCTG		59	3145190	3145208	TTAGATCCACTTAGCGCAC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15403	FBgn0031504	FBtr0077661	1	1	1	60	2L	3129071	3129089	GCATTCAAGGAGTATGGAG		57	3129112	3129131	GAGAAATGACGGAAATGACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31950	FBgn0051950	FBtr0077630	3	1	1	135	2L	2878780	2878798	TGGTGGGATTCTTCAACTG		59	2878897	2878915	CTTAGGGAGACTATGTGCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3117	FBgn0031471	FBtr0077688	2	1	1	80	2L	2847053	2847071	TTCGACTTTAGTTCCACCA		58	2846921	2847011	ACTCTTACTCATGCCTATCAC		59	NA	
Drosophila melanogaster	50	CG10908	FBgn0031376	FBtr0077813	3	1	1	198	2L	1974696	1974714	GGCCATCACGTATATCTGG		59	1974938	1974956	CAAATCCTGCGAGTATTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5397	FBgn0031327	FBtr0077920	2	1	1	186	2L	1240785	1240804	ATGTATCTATCGATGTCGCC		59	1240952	1241051	TACTCCTTAAGCAATTGACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5126	FBgn0031320	FBtr0077978	2	1	1	102	2L	1183604	1183622	TATGAGAATGTGCTTCGGA		58	1183463	1183538	TCCCTAAACCTTCAACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	kraken	FBgn0020545	FBtr0078016	3	1	1	224	2L	853236	853254	TGGGAGGAGTTCTCTATCG		59	853707	853726	GAAGATGAAGTACTGCATGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	dock	FBgn0010583	FBtr0078013,FBtr0078015,FBtr0078014	2	3	3	102	2L	831533	831552	GTATTATGGAGCCATCACCC		59	831616	831722	GTCTCCCATGTTAGTCTCAC		59	NA	
Drosophila melanogaster	50	CG3876	FBgn0031284	FBtr0078039	2	1	1	83	2L	818626	818705	AGTCTATACTTTCTTCGCGT		58	818562	818580	TAGAAGTCCCAGTAGGAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snmRNA:430:CR33745	FBgn0053745	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	su(f)	FBgn0003559	FBtr0113732,FBtr0113733,FBtr0113734	1	3	5	277	XHet	78861	79328	ATATGCTGAGAATGTGGGC		59	79569	79587	ATAGTAGCTCTACGCTGAC		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG2893	FBgn0040030	FBtr0113766,FBtr0113767,FBtr0113768,FBtr0113769	2	4	4	61	XHet	9377	9397	GTATTTAACATCCTGGCAGTG		59	9420	9495	AAGGGTATTGTCATGCCAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CR32661	FBgn0030356	FBtr0073593	2	1	1	71	X	11812357	11812376	ATTCATTCACGAACAGAGTG		58	11812241	11812259	ATTAGTTTGGACATGTGGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG14619	FBgn0031187	FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350	3	5	5	124	X	21868684	21868703	TTATGAACTCGGTCATCCAG		59	21868790	21868868	GAGTTTGGCAAATTCGTGG		59	NA	
Drosophila melanogaster	50	CG12995	FBgn0030826	FBtr0074401,FBtr0074402	3	2	2	72	X	17103956	17103974	ACTGATGATCCTTCTGGGT		59	17103902	17103920	ATTGGAGGACACATCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9992	FBgn0030744	FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309	3	5	5	94	X	16277004	16277022	AGTCCTACTTCCGAGACTG		59	16276866	16276946	ACAAAGTTGTGCAAGTCCT		59	NA	
Drosophila melanogaster	50	CG9413	FBgn0030574	FBtr0073943,FBtr0073944	2	2	2	91	X	14482758	14484291	GGAACTATGATAGGGTCTGG		58	14482686	14482705	GCAAGCCAGATTATAAAGCT		58	NA	
Drosophila melanogaster	50	CG12721	FBgn0030373	FBtr0073637	2	1	1	79	X	11966601	11966619	CAATCTAGATGGATGGCGA		58	11966540	11966558	TTCTTACGCTTCTTTGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32708	FBgn0052708	FBtr0071286	1	1	1	60	X	8980570	8980590	CAATTCTATGACTCGCTATGG		58	8980610	8980630	TTAGATGGACCCACTTAAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12541	FBgn0029930	FBtr0071031,FBtr0110994	1	2	2	169	X	6927337	6927422	GAGTCTTTCAGAAGAATGGG		57	6927187	6927205	CTGTTGTGAATCCATCGTC		58	NA	
Drosophila melanogaster	50	Spt6	FBgn0028982	FBtr0070896	3	1	1	80	X	6163485	6163568	ATCTTTACAGACGCATCAC		57	6163612	6163630	CTCGTACTTTGAGAAGTCG		57	NA	
Drosophila melanogaster	50	CG32786	FBgn0052786	FBtr0070614	1	1	1	60	X	3837362	3837380	TAATTTAGAACTGGCGGTG		57	3837493	3837511	TTGGTTCAAGATCCTCTGG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	msta	FBgn0053548	FBtr0070422	1	1	2	61	X	2101645	2101663	CTACACCAAGATCCTCTGG		58	2101602	2101620	AGTGCTTGGTCATCTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	wapl	FBgn0004655	FBtr0070430,FBtr0070429	2	2	2	96	X	2045180	2045317	CCTTACATCCAGCTTGGAG		59	2045102	2045120	GTGCTCGTAGATGTAGTCG		59	NA	
Drosophila melanogaster	50	arm	FBgn0000117	FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988	2	4	5	93	X	1787501	1787519	CAGAAGAAGCATATGAGGG		57	1786143	1787446	GTATCATATCCTTGCTGATGG		58	NA	
Drosophila melanogaster	50	CG3038	FBgn0040373	FBtr0070107	2	1	2	100	X	139376	139459	AAAGAGAACTCTTAGCCGT		58	139294	139312	TTCTTCCAGTTTGCTTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	pho	FBgn0002521	FBtr0089204,FBtr0089205	3	2	2	101	4	1194715	1194795	AGACAATACAGACTCGACTG		58	1194633	1194651	TTACAACCCTTATGTGGGC		59	NA	
Drosophila melanogaster	50	CG11897	FBgn0039644	FBtr0085387,FBtr0085386	1	2	2	80	3R	24989869	24989950	CAACGTTGATCCAGAAACC		59	24989992	24990012	GCTATAGTCAATACAGTGCAG		58	NA	
Drosophila melanogaster	50	CG4572	FBgn0038738	FBtr0083861,FBtr0083860,FBtr0083862	2	3	3	60	3R	15688809	15688827	GTGGGCAATAAGACATTCC		58	15688767	15688785	TCTTCAAGTGAAGTTCCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	beat-IIa	FBgn0038498	FBtr0083453	2	1	1	131	3R	13153084	13156753	CATGCAAGTTGTTGAACTG		57	13152971	13152989	GTAAATGTGAGTTCTGCCC		58	NA	
Drosophila melanogaster	50	CG6752	FBgn0038296	FBtr0083029	3	1	1	92	3R	11019523	11019541	GATGCTAGGTTGGGATCAG		59	11019377	11019469	AAGGTAAAGCGTAGTATCCAC		59	NA	
Drosophila melanogaster	50	trx	FBgn0003862	FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949	1	5	5	81	3R	10091189	10091208	ATGTTGGAGTCTTCAGATCC		59	10091050	10091145	TCGATAACCATTTCACCCG		59	NA	
Drosophila melanogaster	50	CG31345	FBgn0051345	FBtr0082689	2	1	1	90	3R	8637672	8637691	ATCGATGAAATGTTCTCCAG		57	8637369	8637447	TATTCATAGGAGGACGCAG		58	NA	
Drosophila melanogaster	50	CG6950	FBgn0037955	FBtr0082522,FBtr0082519,FBtr0082520	1	3	4	114	3R	7647072	7647092	CGAGGTGATCATTATTGAACC		58	7646919	7646937	GCTTATTGGTCCCTCTGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Jupiter	FBgn0051363	FBtr0082456	2	1	6	159	3R	7418218	7418236	TTTGGTCAGAACACAGAGG		59	7417723	7418096	TATTGCGGAAGACTGATCTC		59	NA	
Drosophila melanogaster	50	CG11999	FBgn0037312	FBtr0078807	1	1	1	146	3R	1180312	1180330	TACTTCTTACAGGACTGGC		58	1180057	1180075	CAGATCCGTACTTGACGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897	1	5	15	192	3R	110112	120843	ATTAAGTGCCGTTAAAGGC		58	120999	121298	GATGTTGTACTTATCGCGA		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG9231	FBgn0036887	FBtr0074972	2	1	1	61	3L	19578682	19578700	CATTATGGTGTACAGTGGC		58	19578639	19578657	GATTCATCTTTGTGACGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6664	FBgn0036685	FBtr0100439,FBtr0075294,FBtr0075295,FBtr0075293	2	4	4	72	3L	17008132	17008150	CAAGACCAAGTGCAAAGTG		59	17007996	17008097	TTTGGCTTGAATGATGACTG		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	Eig71Ec	FBgn0004590	FBtr0075586	3	1	1	148	3L	15644933	15645029	TTGTCGATTGACACTCGAG		59	15644803	15644821	TCCTACGAGTAGTTCGAGG		59	NA	
Drosophila melanogaster	50	CG8757	FBgn0036380	FBtr0075803	3	1	1	131	3L	13834593	13834611	TTGATACGGTCATCTTGCC		59	13834406	13834501	TATTATGGACCTGAACATTGGG		59	NA	
Drosophila melanogaster	50	CG7557	FBgn0036159	FBtr0076174,FBtr0076175	1	2	2	60	3L	11439449	11439467	CAGGAAGCTATGAAGACCG		59	11439491	11439509	GTAGTAACAGCAATCGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hay	FBgn0001179	FBtr0076253,FBtr0114599	3	2	2	116	3L	10626349	10626367	TTTCATCTATGGTCCCACC		58	10626504	10626522	AAATCGAAACTGGTGTCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Oseg1	FBgn0035891	FBtr0076663	3	1	1	114	3L	8402228	8402246	ATATTCGGTTAAGGAGCCA		58	8402074	8402151	GATATCGTAAAGCACATCGG		58	NA	
Drosophila melanogaster	50	nmo	FBgn0011817	FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758	3	6	6	141	3L	8040250	8040352	GTCTTCGATCCGGATAAGC		59	8040457	8040475	AATCAGCCGTATACTGACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13721	FBgn0035554	FBtr0073328	1	1	1	60	3L	4497249	4497270	CCATACTATGGAGGTTACTACG		59	4497210	4497229	AGAAGTAGTGTCCATAGTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10433	FBgn0034638	FBtr0071690	2	1	2	255	2R	17494114	17494195	AGTTACTACATGCTGCAGG		59	17493603	17493621	CATTCTTGCAATCCGAACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5323	FBgn0034362	FBtr0086706	3	1	1	109	2R	14502924	14502942	TACGTTCAACACGAATTGG		58	14503112	14503130	ATCTGATCCTCATTGGGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG6967	FBgn0034187	FBtr0086977	1	1	2	74	2R	12950579	12950597	CAAACAATGCAACCCAGAG		59	12950699	12950717	CTTGGCGGATAATATGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Fen1	FBgn0025832	FBtr0087075	1	1	1	60	2R	12742011	12742032	CAACACCTATCGGGATATAGAG		59	12741972	12741990	CACGGTGTATTTGCTAGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6145	FBgn0033853	FBtr0087687,FBtr0087685,FBtr0087686	2	3	3	60	2R	9426355	9426492	AGCTAGTGACCTTTAAAGATGG		59	9426316	9426336	CAGACGATAAAGTCAATCCGA		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3814	FBgn0025692	FBtr0087814,FBtr0087813	2	2	2	179	2R	8763437	8763613	TATTGATGTGCCAATTGCTG		59	8763215	8763233	AGTTAAGAGGCGTCTTACG		59	NA	
Drosophila melanogaster	50	achi	FBgn0033749	FBtr0087942	3	1	2	87	2R	8400761	8400879	CAGTGTCATCTACAGCTGG		59	8400692	8400710	GATCATGGTTGCTTGAAGC		59	NA	Nonspecific
Drosophila melanogaster	50	Cam	FBgn0000253	FBtr0088002,FBtr0088001	2	2	2	95	2R	8156862	8156880	GAGAAACTCACAGACGAGG		59	8156936	8161287	CATCATAGTCACGAATTCTTCG		59	NA	
Drosophila melanogaster	50	luna	FBgn0040765	FBtr0088210	3	1	1	247	2R	6877164	6877182	AGTCTACACGAAGAGTTCG		58	6870781	6870799	ATGGCCCTGCTTAAATCTC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	2	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421092	TAGTAAGGTAGCAAAGTAGGG		58	NA	
Drosophila melanogaster	50	Pld	FBgn0033075	FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997	3	6	6	81	2R	2141752	2142360	ACATTCAGGGTTACTTGGT		58	2142405	2142423	CCCTCCTTACTAGTTCCAG		58	NA	
Drosophila melanogaster	50	dl	FBgn0000462	FBtr0081005,FBtr0081006,FBtr0081007	3	3	3	81	2L	17442329	17442416	GATCCGTTTAAGACTGGCT		59	17442266	17442285	ATACTTGAAAGCACAATCGC		59	NA	
Drosophila melanogaster	50	CG16848	FBgn0032522	FBtr0080501	2	1	1	60	2L	13412898	13412916	CGTGGATGATTGTGTACAG		58	13412938	13412958	CTTAAGGACTCCTTCGTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16824	FBgn0040973	FBtr0113336	1	1	1	78	2L	13293101	13293119	AGAAGAAGCCTCTAAAGGC		58	13293161	13293179	TTCTGCTTCTGTTTGAAGG		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15483	FBgn0032457	FBtr0080402	2	1	1	60	2L	12760517	12760535	GAACCAATGGGCTTATCGA		59	12760475	12760493	CGAGAACCGTACATCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4851	FBgn0032358	FBtr0080212	1	1	1	80	2L	11280747	11280827	TCATTGTGCTGGGATACTC		59	11280871	11280889	AGGTCTTCACATTGTGCTC		59	NA	
Drosophila melanogaster	50	CG17140	FBgn0032306	FBtr0100837	1	1	2	113	2L	10843819	10843838	TCACCAACAATGATCTTCTC		57	10843657	10843743	TTTGAAAGCTCACTTCGTC		58	NA	Nonspecific
Drosophila melanogaster	50	CG13795	FBgn0031937	FBtr0079506	1	1	1	89	2L	7725460	7725542	CTTTAAAGGCATGGGATATGTG		59	7725392	7725410	ATGAACAGAAGTGGAACCG		59	NA	
Drosophila melanogaster	50	CG9527	FBgn0031813	FBtr0114603,FBtr0089948	1	2	2	80	2L	6445909	6445928	GGATATGGACACAATTCTGC		58	6445784	6445867	GCATTAAGTAGATTGAGCGG		58	NA	
Drosophila melanogaster	50	Arc-p20	FBgn0031781	FBtr0079200	1	1	1	61	2L	6125580	6125598	GCTACGACATAAGCTTCCT		59	6125620	6125641	CAGTTTGTGCTTATACATCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9140	FBgn0031771	FBtr0079216	1	1	1	80	2L	6061112	6061195	CATGACTCGATTTGTTAAGGG		59	6061052	6061070	TGTCCCTCAATTTGTTTGG		58	NA	
Drosophila melanogaster	50	toc	FBgn0015600	FBtr0110903,FBtr0077665,FBtr0077663,FBtr0077662,FBtr0077664	1	5	6	90	2L	3071761	3080665	TTCATGTCCAAAGAGCTGG		59	3071689	3071710	GCAATATAGTCTTCTCTAGCGT		59	NA	
Drosophila melanogaster	50	Rbp9	FBgn0010263	FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635	1	7	7	80	2L	2963120	2963232	GCAATCTGTTAAGGTGATTCG		59	2963273	2963292	TCTTCGTAATTCGTCATGGT		59	NA	
Drosophila melanogaster	50	CG15452	FBgn0031130	FBtr0077292	1	1	1	135	X	20616430	20616708	GATTCGCAACGCATTAAGG		59	20616313	20616331	TTAGTGGATTGTGCATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp19a	FBgn0031109	FBtr0077300	3	1	1	127	X	20286980	20286998	CCAAGTATCCGAAGGTCAG		59	20287089	20287182	CTTTCCCTTCTTGATTGCC		58	NA	
Drosophila melanogaster	50	Grip84	FBgn0026430	FBtr0074775,FBtr0074777,FBtr0074776	3	3	3	80	X	19457157	19457176	ATCTCCAAGTACCAAATGCT		59	19457034	19457114	TTCCTTCCAAATCTTGCAC		58	NA	
Drosophila melanogaster	50	RpII215	FBgn0003277	FBtr0073542	2	1	1	147	X	11461192	11461210	AACAAGGTGAACCGTATCC		59	11460999	11461081	CACAAGCAATAACCTGGGA		59	NA	
Drosophila melanogaster	50	ovo	FBgn0003028	FBtr0070740	3	1	4	79	X	4959929	4960106	CAAACAATAGTCTCGACGC		58	4960149	4960167	AATATCGATCTTGGCCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	snoRNA:Psi28S-2562	FBgn0082986	FBtr0113585	2	1	1	60	3R	16648651	16648669	GCGAATCTGATATCGTGGT		59	16648691	16648711	GGGCAAATCATTGATACTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17189	FBgn0039485	FBtr0085105	3	1	1	97	3R	22928030	22928048	CCAAATGCGAATAGATGGT		57	22928106	22928187	CCAGATCATCTATTTCCATGAC		58	NA	
Drosophila melanogaster	50	CG6154	FBgn0039420	FBtr0084992,FBtr0084991	1	2	2	81	3R	22095465	22095485	ATATCAACCACATAAGGGAGG		58	22095528	22095680	TTGGGCACTAAGTTGACTC		59	NA	
Drosophila melanogaster	50	CG11453	FBgn0038734	FBtr0083791	3	1	1	99	3R	15609841	15609859	GAGTCATGTCTACACGCTC		59	15609920	15610000	AGTTTCGGGTACATAGTACAG		58	NA	
Drosophila melanogaster	50	CG10326	FBgn0038453	FBtr0083336	2	1	1	109	3R	12470098	12470280	CCACAGTGTTTGTAATCGT		57	12470353	12470371	CATGAGGATGAGTAGGGTG		58	NA	
Drosophila melanogaster	50	CG11033	FBgn0037659	FBtr0081970	3	1	1	186	3R	4883799	4884056	GATCTCACCGTAGCTTTCC		59	4884206	4884224	TCATCTGCAGGTTCTTCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Alh	FBgn0037471	FBtr0081613,FBtr0081612	1	2	6	82	3R	2947047	2947065	GATTTGGGAATGTGACCAC		58	2946847	2947004	GCAAATATAGCAAGTCTTCGAG		59	NA	
Drosophila melanogaster	50	PEK	FBgn0037327	FBtr0078770	3	1	1	97	3R	1286479	1286581	ATACTTCCATTCCTGGACC		58	1286400	1286419	CTATCTGGATAGAGGTGGAC		58	NA	
Drosophila melanogaster	50	CG5047	FBgn0037008	FBtr0078215	1	1	1	60	3L	20513090	20513108	AATGCCAAGGAGCTAAGTG		59	20512989	20513066	CCGGAGGAATCATCAAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33255	FBgn0053255	FBtr0074997	2	1	1	121	3L	19417906	19417924	GAACTACAATGGAATCGCC		58	19418009	19418405	GAATGAGAAGAACTAGCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	mbf1	FBgn0026208	FBtr0075393	2	1	2	234	3L	16568068	16568296	AACAGAAGTATGGTGCTGG		59	16568863	16568881	AAGTTGTTTGGAATACCGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG32150	FBgn0052150	FBtr0075535	1	1	2	101	3L	15832748	15832948	ATAATCCGAAAGATGGCGG		59	15832665	15832683	CATAGCACCGCTCTATTCC		59	NA	
Drosophila melanogaster	50	CG7945	FBgn0036505	FBtr0075601,FBtr0075599,FBtr0075600	3	3	3	63	3L	15514968	15514987	CAGAAGAACATCAAGAAGCG		59	15514924	15514945	GGCTAACAGTTTGCTTATTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ent3	FBgn0036319	FBtr0075935	3	1	1	82	3L	12848047	12848065	CATTAACTCGCCGTTTGTG		59	12848111	12848303	CTCCATCAATCTCCTGCTC		59	NA	Nonspecific
Drosophila melanogaster	50	TrpA1	FBgn0035934	FBtr0076586,FBtr0113155	1	2	2	92	3L	8893687	8893760	AGAATGGCGACTTTAATGC		58	8893613	8893631	ATAGATAGTCCAGAGCGTC		57	NA	
Drosophila melanogaster	50	5SrRNA:CR33368	FBgn0053368	FBtr0086360	1	1	1	62	2R	15648191	15648209	AATACATCGGTTCTCGTCC		59	15648147	15648165	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30169	FBgn0050169	FBtr0072302	2	1	1	85	2R	20414565	20414643	GAAGGTCCAGGAACTATGG		59	20414692	20414769	TTTCCACTTTCCAATCGGA		59	NA	
Drosophila melanogaster	50	CG18606	FBgn0034428	FBtr0086513	1	1	1	64	2R	15175934	15175955	GGTCATACTTTCCAAATGTCTC		59	15175980	15175998	TGGTGATGAACAGAGTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	resilin	FBgn0034157	FBtr0087024	2	1	2	123	2R	12669433	12669451	AATTACCAGGTTGAGGACG		59	12669538	12669683	ACTCCACAATTTGCTTCCT		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG17390	FBgn0033939	FBtr0113081	2	1	1	127	2R	10349497	10349515	GTGAATACTGCTCCAAGCT		59	10349606	10349700	CTTCAAGTGGTCACTCCTG		59	NA	
Drosophila melanogaster	50	CG34219	FBgn0085248	FBtr0112412	1	1	1	60	2R	4806217	4806235	TACACGCTAAACGATGAGG		59	4806175	4806193	AGTGATACTCCTGAACCAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12551	FBgn0033045	FBtr0086048	2	1	1	87	2R	1808614	1808632	ATTCGTCTATGAGTCACCC		58	1808683	1808701	GACATCGGATGTGGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5337	FBgn0032249	FBtr0080043	1	1	1	90	2L	10433910	10433928	TAATCCCAATACCGAGGTC		58	10433764	10433856	GAGATCACTCATACCCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15386	FBgn0040715	FBtr0077842	2	1	1	60	2L	2216627	2216646	CTGTTTATGAAGAAGCTCCA		57	2216586	2216604	ACGATGACCTGTAGATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31974	FBgn0051974	FBtr0078150	2	1	1	124	2L	141333	141407	CACATACGAATTGTTTCTCG		57	141228	141249	CCACGTCTTTATAGTCTTTAGG		58	NA	
Drosophila melanogaster	50	CG2657	FBgn0031209	FBtr0113008	3	1	1	98	2L	23986	24004	TTTGTCTTCGGAGCTATCC		59	23851	23869	GTGTAGAGTACGTATGGGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	snoRNA:Me18S-A1576	FBgn0025881	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snmRNA:430:CR33736	FBgn0053736	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG17162	FBgn0039944	FBtr0113724,FBtr0113726,FBtr0113723,FBtr0113725,FBtr0113722	1	5	5	60	XHet	67548	67566	TACTCACTTAAATCGCCCA		58	66298	66316	TTATAGACGTTTGATGCGG		57	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG32820	FBgn0052820	FBtr0070053,FBtr0070054	2	2	2	60	X	21484156	21484174	AACAACTTGAGGAACTCCC		59	21484114	21484132	CCTGCTTCGAGATCTTCTC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	sol	FBgn0003464	FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676	3	4	4	85	X	21228148	21228166	AGAGCTACAATGTGGTGTC		59	21228212	21228302	GAGAACGATGATTACTTGTCTC		58	NA	
Drosophila melanogaster	50	CG1835	FBgn0031127	FBtr0077278	1	1	2	166	X	20540413	20540431	TAAGGAGCTTGCCTTTGAG		59	20541800	20541818	TTACACGCATTTCCTTTGC		59	NA	Nonspecific, DesignNoJunction, InUTR
Drosophila melanogaster	50	l(1)G0004	FBgn0027334	FBtr0077298	1	1	1	84	X	20263098	20263116	AATTCACCATCGAGAACGT		59	20263164	20263182	TGAATGTTCTGGTAGCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089400,FBtr0089403,FBtr0089409,FBtr0089408	1	4	13	153	X	20101663	20103201	TGAATTCACAGGAGACGAC		59	20101528	20101548	TTCAGTCTCCTTCTTGATCTC		58	NA	
Drosophila melanogaster	50	Sdic2	FBgn0053497	FBtr0089610	3	1	1	101	X	20076855	20076873	ATATCCACGCACTACAACC		59	20076705	20076790	CTTTGTGTCCTTTAGCGAC		58	NA	Nonspecific
Drosophila melanogaster	50	CG15322	FBgn0031088	FBtr0070005	1	1	1	109	X	20031044	20031505	TCCACTTTATGCGTATCCG		59	20031578	20031596	TGTATTTGTGTTGCTGCTG		58	NA	Nonspecific
Drosophila melanogaster	50	CG14235	FBgn0031066	FBtr0074817,FBtr0074815,FBtr0074816	3	3	3	198	X	19638353	19638371	CATCGCTATAGCTATCGCC		59	19635080	19635098	GGAAGTCGATGTACGACTG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG7914	FBgn0030995	FBtr0074696	2	1	1	106	X	19086902	19086920	AACGAGGAGGATATGAGTC		57	19086814	19086832	CTGTAGTTCCAGAACTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14193	FBgn0030994	FBtr0074670	3	1	1	61	X	19084455	19084474	AAAGGATGAATCCAAGGAGG		59	19084498	19084516	AATTGTGAACTCCCATGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32549	FBgn0052549	FBtr0074573,FBtr0074575,FBtr0074574	2	3	6	163	X	18301908	18302558	CCTACCAATGCGAGATGAG		59	18286877	18286896	GGTGTAGTCCATATCGAAGC		59	NA	
Drosophila melanogaster	50	CG15814	FBgn0030873	FBtr0074471,FBtr0074469,FBtr0074470,FBtr0074468	3	4	4	124	X	17743080	17743160	CAGCTATTGGCTACTACAC		57	17742974	17742992	GTAGGTGTTCTCAATGACG		57	NA	
Drosophila melanogaster	50	f	FBgn0000630	FBtr0110991,FBtr0074423,FBtr0074420,FBtr0074422	2	4	6	116	X	17166631	17166651	AAATACAACGTAGGACGATCC		59	17166729	17166933	GTTCAAATGGTGGTTGCTG		59	NA	
Drosophila melanogaster	50	CG12996	FBgn0030835	FBtr0074419	2	1	1	139	X	17144638	17144656	GATTAGCAGGAACCTGGAC		59	17144759	17145085	AAATTCGAACTCTGATGGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG8918	FBgn0030823	FBtr0074403	2	1	1	152	X	17095229	17095248	ATAATAACCTGAAGCCCTGG		59	17095039	17095114	TATCCCAGTGCTCATTTGG		59	NA	
Drosophila melanogaster	50	CG9699	FBgn0030772	FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369	2	6	7	80	X	16588098	16588116	CATTGAGGCGGTTAAATGC		59	16580763	16580781	CCTATGTAATCGCGATCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	Nup153	FBgn0061200	FBtr0113475,FBtr0074284	3	2	2	60	X	16494295	16494313	GGAAGAGGATGAATCCTCG		59	16494337	16494421	CATGATGGAGTTGTTGCTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Anxb11	FBgn0030749	FBtr0074303,FBtr0074302	2	2	2	116	X	16312472	16312490	CTAGGGAGCTACTGAAAGC		59	16312305	16312395	CCTCGTACTCTTGGAATATCAG		59	NA	
Drosophila melanogaster	50	Traf3	FBgn0030748	FBtr0074275,FBtr0074274,FBtr0074273	3	3	3	145	X	16310576	16310596	CCAGTGTCCAGAATATAAGGG		59	16310758	16310836	TATATCCAGCCGTAGAGCA		59	NA	
Drosophila melanogaster	50	CG4239	FBgn0030745	FBtr0074270,FBtr0074269,FBtr0074268	1	3	3	243	X	16281095	16281113	AATGTTTCCGTTCTTCGAC		58	16281320	16281395	GTAGAAGACGACGTACCAC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	vap	FBgn0003969	FBtr0074141,FBtr0074143,FBtr0074142,FBtr0074140	1	4	4	80	X	15894967	15894985	ACACGATCTTTGGTCATGG		59	15894840	15894923	CATGTATTGTTCCTTGCCG		59	NA	
Drosophila melanogaster	50	CG32584	FBgn0052584	FBtr0074069,FBtr0074070	1	2	2	60	X	15469443	15469464	GATGTCAATAACTCACTTGAGG		58	15469404	15469422	TTTGAGCTTCTGATTCCAC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	mud	FBgn0002873	FBtr0073907,FBtr0073905,FBtr0073906	3	3	3	82	X	14142425	14142580	CCTAGCACATAACTATCCCG		59	14142624	14142643	TGTAAACGTAAAGGCAATCC		58	NA	
Drosophila melanogaster	50	CG11585	FBgn0030543	FBtr0114508	3	1	1	60	X	14083688	14083706	CCATTCTGATTCTGAGCCT		59	14083728	14083748	AGATAGGTGTTACTCAATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34346	FBgn0085375	FBtr0112555,FBtr0112554	2	2	2	239	X	13779252	13779353	GAATCCCTCAAGGTCAAGG		59	13779031	13779049	AGATGTTGCTGAGGTTGAG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG11071	FBgn0030532	FBtr0073829	1	1	1	288	X	13748717	13748735	CATCCTCAATTTCTTGCGC		59	13748168	13748186	CTTCGATAGATAGTCCGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2209	FBgn0030441	FBtr0073717	2	1	1	60	X	12916429	12916447	GATCCAGAATTCGAATGCG		59	12916469	12916489	TCATAGTCTTCAAGGATTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32644	FBgn0052644	FBtr0073714	3	1	1	81	X	12862153	12862270	TCAGTGGACAAGAGTTATTCG		59	12862313	12862331	CCAACATCAACAAGCTTCG		59	NA	
Drosophila melanogaster	50	LIMK1	FBgn0041203	FBtr0073661,FBtr0073659,FBtr0073660	3	3	3	130	X	12482056	12482074	CCCGAGATGATGAAAGGTC		59	12481875	12481893	AGACTGAAGTCCGAATTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	cac	FBgn0005563	FBtr0073587,FBtr0073586,FBtr0073584,FBtr0073585	2	4	10	200	X	11848297	11856053	GTCGAACTCAATCAACGTC		58	11846240	11848134	TTGATATTCCCGAACACCTG		59	NA	
Drosophila melanogaster	50	CG32666	FBgn0052666	FBtr0073507,FBtr0073508	3	2	2	124	X	11445270	11445288	GACCTTCCTCAACATCTCG		59	11445376	11445818	CATTCATGCGATCGTTTGG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Kap3	FBgn0028421	FBtr0112931,FBtr0112934,FBtr0112933,FBtr0112932,FBtr0073459	3	5	5	175	X	11231085	11231169	GCAATATAAGATTGGATCGCTG		59	11230931	11230949	TGATGTCCAGGAAATCGTC		59	NA	
Drosophila melanogaster	50	CG11106	FBgn0030280	FBtr0073446	1	1	1	71	X	11096551	11096569	ATTACTTTCAACGGATGGG		57	11096604	11096622	ATTGAGGACAGTAGTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11160	FBgn0030257	FBtr0073390	2	1	2	81	X	10942565	10942583	ATCGTATCAACAACGACCT		58	10942627	10942986	ACATCCCGATATCTAAGGAG		57	NA	
Drosophila melanogaster	50	CG2145	FBgn0030251	FBtr0073387	3	1	1	95	X	10822729	10822747	ACATCCAAGTGAATCTGCA		59	10822883	10822901	ATTCAAGGGCTTTCGAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15295	FBgn0030220	FBtr0071508	1	1	1	66	X	10511011	10511029	TACATAGGCACCAAGAACG		59	10510963	10510981	CATCGTTCTTGAACTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2962	FBgn0030186	FBtr0071486	2	1	1	233	X	10110588	10110608	TCAAGTGGATTAGTAGTCAGC		59	10109948	10109966	CTGATGGATCACCTTGACC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG2989	FBgn0030171	FBtr0112972	2	1	2	107	X	9927488	9927506	GTACACGACCCACTAAGAG		59	9927574	9934734	GATAACGATTCGTGACAATGTC		59	NA	
Drosophila melanogaster	50	rdgA	FBgn0085373	FBtr0112551	2	1	3	93	X	8917821	8918117	GGATTCAGCCCTATACTGG		58	8918297	8918315	CTTGTTCATGTAGTGCACG		59	NA	
Drosophila melanogaster	50	CG2278	FBgn0030017	FBtr0071185	1	1	1	90	X	8062922	8063011	AATGGTTACTTCGGTTCCA		58	8062850	8062868	AGGAATAGTCCGGATACGA		59	NA	
Drosophila melanogaster	50	CG10959	FBgn0030010	FBtr0071157	3	1	1	60	X	8044188	8044206	AGTTCAAGTGCAAGATCTG		57	8044230	8044248	ATATGAGCGGATAGACCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2129	FBgn0030008	FBtr0071155	2	1	1	78	X	8040333	8040351	GATGAGGACGAAGATGAGC		59	8040393	8040411	GTAGAGATTCGCTGGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32721	FBgn0027553	FBtr0071077	3	1	1	104	X	7620817	7620836	CATATGAGGATCCCTTCCTG		59	7620670	7620688	AGATGAACTCGTCGAAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG32726	FBgn0052726	FBtr0071059	2	1	1	112	X	7319737	7319756	CGTTTCTGTCTACTGTTCCT		59	7319578	7319596	GTGAAGTTGCGATGATGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33691	FBgn0064122	FBtr0091672	2	1	3	165	X	6766947	6771957	AACCACATGTCACTAGCTG		59	6772086	6772104	CATTACCCGAATTCGAGGA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	l(1)G0060	FBgn0027321	FBtr0070842,FBtr0070841	1	2	2	60	X	5636625	5636643	TCTGCATGACCTCATTCAC		59	5636583	5636604	GAATTTGTACATCAGATCGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CanB	FBgn0010014	FBtr0070764	3	1	1	135	X	5226852	5227095	TTATTTATGAGCGTGCCAG		57	5227463	5227481	AAGTTGGAACACATGTCCA		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15471	FBgn0029726	FBtr0070733	2	1	1	60	X	4676650	4676668	GACAAGACATTCGATCACC		58	4676608	4676626	CGTGTCGTACTTTAAAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12206	FBgn0029662	FBtr0070528,FBtr0070527	1	2	3	82	X	3360656	3365918	CCCAATGTCAAGAACTATATGG		58	3360595	3360613	TATGTGTCCCTGATGATGC		59	NA	
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514	2	9	14	87	X	3215176	3215194	TCTATATCGCTCCGATTCG		58	3215244	3219972	CTGTTCTTTAAACCTTTCGC		57	NA	
Drosophila melanogaster	50	dnc	FBgn0000479	FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070511,FBtr0070514	2	13	14	81	X	3228354	3228595	CGTCGCTTAAGTTCAAACG		59	3228640	3228658	TCGGAAATCTGATTTCCCG		59	NA	
Drosophila melanogaster	50	per	FBgn0003068	FBtr0070477	1	1	1	80	X	2585970	2586053	ACAACAAGAAATACACGGAC		58	2586096	2586114	TGAAGGACGAGTAGAAGGA		59	NA	
Drosophila melanogaster	50	HLH3B	FBgn0011276	FBtr0070506	2	1	1	88	X	2575464	2575482	GTCCATATCCGATGGAGAC		59	2575394	2575412	TGTAATCGCGAAGATCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	phl	FBgn0003079	FBtr0112818,FBtr0111025,FBtr0070401	2	3	3	145	X	2236247	2236265	CAGATCACTCCAACTCCAC		59	2236374	2236460	CTCCGCCAGAATATTCCAG		59	NA	
Drosophila melanogaster	50	CG4313	FBgn0025632	FBtr0070327	2	1	2	172	X	1948315	1948333	GATCTCGTACAGCATACGG		59	1948468	1948550	TGATAGGGTTCTTTCCATGG		59	NA	
Drosophila melanogaster	50	CG14817	FBgn0026089	FBtr0070365	1	1	1	122	X	1771133	1771151	TTGTTCAAGAAGACTGTGC		58	1771029	1771047	TAACATTACCTGCTCCTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14815	FBgn0023516	FBtr0070368,FBtr0070367	3	2	2	60	X	1761161	1761180	CCTTTAGAGGACAGAACCAG		59	1761120	1761138	GAAATGACCATCTTCAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DAAM	FBgn0025641	FBtr0070241,FBtr0070240,FBtr0070239	2	3	3	81	X	1187404	1187422	CTCATGCTCGGTATACAGC		59	1187281	1187360	CAAAGAAGTCCAAATGCCTG		59	NA	
Drosophila melanogaster	50	CG3706	FBgn0040342	FBtr0070189	2	1	1	62	X	826120	826138	GAAGAGCTATGACGTGGTC		59	826076	826094	GTGACCATTAGTTTCTGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18166	FBgn0029526	FBtr0070096	2	1	2	101	X	374490	374958	CCTCACAAGTGGACTATCG		59	374407	374425	TTACAGTGGCCAGTTTCAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG13377	FBgn0040369	FBtr0070106	1	1	1	66	X	152935	152953	TCATTGTACAAGGCACCAG		59	152823	152841	CTGTATACTGCGTAGGAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CR40596	FBgn0085753	FBtr0114203	2	1	1	142	U	10047393	10047411	TATGCGTAGAAGTGTTTGG		57	10047516	10047535	ACTAACTCGTTATCAACCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12423	FBgn0040038	FBtr0113685,FBtr0113686	1	2	2	94	U	1911191	1911209	AATGGATCGACCGTAATCC		59	1911267	1937080	CATGAAGCACTTTGGAGTC		58	NA	
Drosophila melanogaster	50	CG41041	FBgn0069966	FBtr0114295	2	1	1	72	U	403049	403067	CGTATGGGACAACTCTTCC		59	402995	403013	TTCTGTTAACTCAGGGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Zyx102EF	FBgn0011642	FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089210,FBtr0089215,FBtr0089211,FBtr0089213	3	7	7	82	4	1079778	1079796	TAACCAGACAACGAATCCT		58	1079118	1079732	ATGTAGAAGAGCTCTTGCC		59	NA	
Drosophila melanogaster	50	CG11076	FBgn0039929	FBtr0089220,FBtr0089221	3	2	2	60	4	1051045	1051063	ATAAACAACCGCTACCAGG		59	1051003	1051021	TTGGGTAGCGTTAGATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eph	FBgn0025936	FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086	2	4	5	109	4	640794	640888	TGCTCAACAGATATCCAGG		58	640961	640979	TTATAGTGTCGAGTTGCCG		59	NA	
Drosophila melanogaster	50	Eph	FBgn0025936	FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086	2	4	5	109	4	640794	640888	TGCTCAACAGATATCCAGG		58	640961	640979	TTATAGTGTCGAGTTGCCG		59	NA	
Drosophila melanogaster	50	Rad23	FBgn0026777	FBtr0089121,FBtr0089122	3	2	2	96	4	330247	330325	AGTATTGCAGCAGATTGGT		59	330384	330403	GTCAATCGGTTGATTAAGCA		58	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	2	7	7	83	4	208987	209060	CGGATCATAGACTTACGGA		57	208922	208940	CGAAGCATGGTTTAGTCAG		58	NA	
Drosophila melanogaster	50	pan	FBgn0085432	FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156	3	9	10	81	4	103362	106346	TCCTAAGATGGGCTTAACTC		58	106387	106408	CATATCTGAACTTAGCATTGGG		58	NA	
Drosophila melanogaster	50	Hsromega	FBgn0001234	FBtr0084059,FBtr0084057,FBtr0084058	2	3	3	60	3R	17123904	17123922	AATGACACATCGTCTCTGG		59	17123946	17123964	AACTGGCAGGGTATATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	awd	FBgn0000150	FBtr0085864	1	1	1	95	3R	27571181	27571199	TCTGAATGTGGTCAAGACC		59	27571104	27571122	ACCTGAATGCAGAAGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycG	FBgn0039858	FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799	3	5	5	97	3R	27426466	27426484	ACTTCCACATCAAGGAGTC		58	27426317	27426407	ATCAGGAATCCTCATGTACTG		58	NA	
Drosophila melanogaster	50	gskt	FBgn0046332	FBtr0085784	2	1	1	60	3R	27198865	27198883	CTGCTCAAGGTACTATCGT		58	27198906	27198925	CTTGGTGGTATAGTCAGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1544	FBgn0039827	FBtr0085755,FBtr0113311,FBtr0085756	2	3	3	87	3R	27027534	27027614	GAAGACTTTAACATCCATCCC		58	27027663	27027681	ACCAATCGATCTTGACTCC		59	NA	
Drosophila melanogaster	50	Prosalpha3T	FBgn0039819	FBtr0085738	3	1	1	66	3R	26948741	26948761	GATATCAAACAGGCGTATACG		58	26948695	26948715	CCATGTAAAGAAACGATACCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31012	FBgn0027598	FBtr0085704,FBtr0085706,FBtr0085707,FBtr0085705	2	4	4	136	3R	26650596	26650683	GTTCCTATGACTGGTAACCT		58	26650779	26650800	GATTCAGGTAGTTGATTAGCAC		58	NA	
Drosophila melanogaster	50	CG2224	FBgn0039773	FBtr0085691	1	1	1	101	3R	26283114	26283193	TGGATTCATACTCATCCAACTC		59	26283034	26283052	CACAATAGCCAAAGCTTCG		59	NA	
Drosophila melanogaster	50	CG2217	FBgn0027544	FBtr0085630	3	1	1	255	3R	26244956	26244977	CGCCGGATTATATTACTATCAC		58	26244652	26244671	GGCGAAACATATAACTACGA		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG15531	FBgn0039755	FBtr0113309,FBtr0085572	3	2	2	112	3R	26021246	26021264	CGGTCTTCTGAAGTACTCG		59	26021090	26021171	ACAGCAGGACATAGAATCTC		58	NA	
Drosophila melanogaster	50	Tace	FBgn0039734	FBtr0085551,FBtr0085550	1	2	2	125	3R	25826681	25826757	GCATATGGATCACGATAGC		57	25826846	25826864	ATGTGATAGGTTTCCTCCG		58	NA	
Drosophila melanogaster	50	Trc8	FBgn0039668	FBtr0085430,FBtr0085432,FBtr0085429	3	3	4	98	3R	25327494	25327512	TGTCCAACTTTGGACTGTC		59	25327200	25327434	CTTGGATTAGTCTGATGGTCC		59	NA	
Drosophila melanogaster	50	CG31044	FBgn0051044	FBtr0085391	3	1	1	82	3R	25044252	25044272	GATAGATGGCTACTGTATGGC		59	25044315	25044334	CATTTAAATGAGCGTGAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11877	FBgn0039636	FBtr0085370	1	1	1	211	3R	24943568	24943586	TGGACTCCCTACTAATCGG		59	24943823	24943841	CTGCGATCATTTGATCCAG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	larp	FBgn0040108	FBtr0089682,FBtr0089680,FBtr0089681	1	3	3	117	3R	24146994	24147108	CGATTATGAAACAGGTCAACTG		59	24146898	24146916	GAAGCTCTTCAGGTACTCG		59	NA	
Drosophila melanogaster	50	RpS10a	FBgn0027494	FBtr0085194	2	1	1	103	3R	23478837	23478855	CAAACTACTCGATCGAACG		58	23478922	23478940	CTGTAGTTCGATCTGTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3368	FBgn0039508	FBtr0085163	2	1	1	74	3R	23111716	23111736	GTACTTACTGATGAGCTTCTG		57	23111830	23111848	AATTGGTAACACCCAATGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5467	FBgn0039433	FBtr0085028	3	1	1	132	3R	22424910	22424928	CCTCGATGAGAAGATTGTG		57	22426977	22426995	TATAATTCGCTCCTTGCAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG31082	FBgn0051082	FBtr0085022	2	1	1	60	3R	22412152	22412170	TCATTGGGAGAAGGTAGTG		58	22412194	22412212	TGGAGTATATCTCCTCGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33970	FBgn0053970	FBtr0100012	3	1	2	117	3R	22174785	22175331	ATATGCCACAGGAGATAGC		58	22175410	22175430	AGAAGGAATTCTGTACGATCC		59	NA	
Drosophila melanogaster	50	CG4774	FBgn0039360	FBtr0084931,FBtr0084929,FBtr0084930	1	3	3	80	3R	21512088	21512108	GGATATGTTATAGTCCAGGGC		59	21511697	21512046	TCCATCCAACAGATCTGTG		58	NA	
Drosophila melanogaster	50	CG11875	FBgn0039301	FBtr0084812	3	1	1	233	3R	21074115	21074133	ACGTCAACGATGTATCCTG		59	21074387	21074405	AGATGACTGTCTGCTTGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11836	FBgn0039272	FBtr0113284,FBtr0084767,FBtr0084768	2	3	3	139	3R	20897387	20897467	ACTGTGACTGTGATTGTGG		59	20897569	20897588	CTTCGTCAGTAAGGATCCTC		59	NA	InUTR
Drosophila melanogaster	50	veli	FBgn0039269	FBtr0084787	3	1	2	93	3R	20890642	20890660	CGAATAATACCTGGAGGCG		59	20890503	20890585	TTTCTCCTTCGACAGACAC		59	NA	
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625	3	8	17	93	3R	20521092	20521110	AGGACATTAAGGACGAGAC		58	20521838	20528752	GTGATATCACCTAAGTCATCG		57	NA	
Drosophila melanogaster	50	CG6631	FBgn0039206	FBtr0084645	1	1	2	153	3R	20358307	20358402	GAACTGGACAAACTGAGGA		59	20358516	20358593	GTATAATGTTAGCATCGGTTGG		59	NA	
Drosophila melanogaster	50	jar	FBgn0011225	FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173	3	4	6	90	3R	20079843	20080373	CCCAAACAAATTGATCAGATCC		59	20079774	20079792	CGAGTACTTCCACTTGGAC		59	NA	
Drosophila melanogaster	50	CG13606	FBgn0039161	FBtr0110794	1	1	2	88	3R	20009628	20009646	TACTTTAGCACCACCTTCC		58	20009698	20009716	AAGTATCTAAACCGCGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rox8	FBgn0005649	FBtr0084592,FBtr0084591,FBtr0084593,FBtr0084594	2	4	4	84	3R	19871217	19871235	ATATTCCAACTACCAGGCA		57	19870980	19871169	CCAGTTGACCTTGATTTCC		58	NA	
Drosophila melanogaster	50	CG17111	FBgn0039048	FBtr0084355	1	1	1	191	3R	18889892	18889910	GTACAATCCCAAGGACTGG		59	18889661	18889739	GCAGATATGAACGTTCTTTGG		59	NA	
Drosophila melanogaster	50	CG31281	FBgn0051281	FBtr0084339	2	1	1	60	3R	18792133	18792153	GATCAGCCTAGAGATTCTGTC		59	18792175	18792193	TGTGCTGATTCCTGTAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6678	FBgn0038917	FBtr0084148	1	1	1	176	3R	17714978	17731656	CTCCATTTGAAGTGTACGG		58	17731796	17731814	AAAGATACGGCTAAAGAGC		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	fit	FBgn0038914	FBtr0084153	3	1	1	60	3R	17709967	17709986	CATTCTAATGCACAAGGTGG		59	17709926	17709946	TTTCTTGGTACTCTCGTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7956	FBgn0038890	FBtr0100124,FBtr0110891,FBtr0084112	2	3	3	92	3R	17350158	17350177	TGAAATCTCCGTTTATGGTG		57	17350229	17350313	GAGTATAGTCTCCCTTTAATGC		57	NA	
Drosophila melanogaster	50	Atpalpha	FBgn0002921	FBtr0089514,FBtr0089516	2	2	8	97	3R	16794124	16794144	TTTCCTTAGCTTATGAGACGG		59	16794202	16798907	CATCGAAATCAACCTTTCGT		58	NA	
Drosophila melanogaster	50	CG4973	FBgn0038772	FBtr0083835	2	1	1	98	3R	15884378	15884398	ACCAAGTATGAGATTCACTCC		59	15884458	15884543	GTGCTTGCACTTTGTTACC		59	NA	
Drosophila melanogaster	50	Indy-2	FBgn0038770	FBtr0091938,FBtr0091937	1	2	2	80	3R	15869771	15869848	ATATACACGGAGCGATTTCC		59	15869891	15869909	CACCATCAAGGGTATCGAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG31219	FBgn0051219	FBtr0113400,FBtr0083783	2	2	2	60	3R	15477439	15477460	CCAAATCTGGAGATCAAATTGG		59	15477479	15477499	TGCTAATGCTACTGAATAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31231	FBgn0051231	FBtr0083662	3	1	1	62	3R	14492861	14492879	TTGAGCAAGCAACTAGAGG		59	14492968	14492987	CTTCTTGTAGTTCGACTGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5255	FBgn0038485	FBtr0083406	3	1	1	60	3R	12963929	12963947	CTATCCCGACAGGATTGTG		59	12963970	12963989	TATATCGTTGCGATACTTGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pxd	FBgn0004577	FBtr0089287	3	1	1	82	3R	12853281	12853363	TTTACTCCTGATCAACTGGA		57	12853408	12853426	ATGGATGAAATGTGGTTGC		58	NA	
Drosophila melanogaster	50	CG31275	FBgn0063261	FBtr0083346,FBtr0083345	3	2	2	60	3R	12576906	12576924	TATTGGGTATGTGGTGTCC		58	12576864	12576883	GTTATCGAAGGATGTTTCGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14899	FBgn0038438	FBtr0083307	2	1	1	72	3R	12309016	12309034	TATCCTACACTGTCCAACG		58	12308906	12308924	TGTGCTCATTGAAGAGACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4699	FBgn0038364	FBtr0083175,FBtr0083176,FBtr0083177	2	3	3	109	3R	11622600	11623024	CTCTCGCTACCAATCACTC		59	11623096	11623115	TTCATCTCCAAATCGGTCAG		59	NA	
Drosophila melanogaster	50	Atx2	FBgn0041188	FBtr0083101,FBtr0083099,FBtr0083100	3	3	3	151	3R	11239224	11239300	ATTATGCATGGGTCTTCTCAG		59	11239413	11239431	TAGTTCAGTGACGAGTTGC		59	NA	
Drosophila melanogaster	50	Atx2	FBgn0041188	FBtr0083101,FBtr0083099,FBtr0083100	2	3	3	150	3R	11239225	11239300	TTATGCATGGGTCTTCTCAG		59	11239413	11239431	TAGTTCAGTGACGAGTTGC		59	NA	
Drosophila melanogaster	50	CG31392	FBgn0051392	FBtr0083088	3	1	1	92	3R	11175071	11175090	AGGAATACTCTAGCGAACCT		59	11175142	11175431	CCATCATATTGAATACTTGCCC		59	NA	
Drosophila melanogaster	50	CG3508	FBgn0038251	FBtr0082968,FBtr0082967	3	2	2	80	3R	10485961	10485979	TATCCAAGGAGTTTGGAGC		58	10486023	10486105	TGCGCAGAAATTGATTCTC		58	NA	Nonspecific
Drosophila melanogaster	50	Cyp6d5	FBgn0038194	FBtr0089765,FBtr0089766	3	2	2	120	3R	9856496	9856605	GTGTATACTCGAGACTGCT		58	9856688	9856707	GATTATGATGGGAGTACCCT		57	NA	
Drosophila melanogaster	50	CG34383	FBgn0085412	FBtr0112624,FBtr0112623	3	2	4	87	3R	9582374	9582619	GTCAGATCAGGAACTTGGA		58	9582670	9582688	CTCCTCAACTGAATCAGCA		59	NA	
Drosophila melanogaster	50	lkb1	FBgn0038167	FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814	1	8	8	283	3R	9504401	9504476	ACACGACGTAAATCAGGAG		59	9504723	9504741	TTAGTGGAGGCATCTAAGG		58	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082802,FBtr0082803,FBtr0082807,FBtr0082801,FBtr0100261,FBtr0082805,FBtr0082804	2	7	8	147	3R	9487574	9487894	GCTTTGTGGAATTCGAAGAC		59	9488069	9488087	CCATATCGATCGTCGTAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34309	FBgn0085338	FBtr0112505	1	1	1	60	3R	9198666	9198685	TATGCCAAGGATATTAGCGA		58	9198705	9198726	CCTTACTGTTGAACAGTTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6753	FBgn0038070	FBtr0082669	2	1	1	160	3R	8467361	8467379	GAAGGACGGATATGTGCTC		59	8466962	8466980	AAAGGAGGTAGGCTAAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18554	FBgn0038060	FBtr0082676	3	1	1	63	3R	8343798	8343816	TTCAATCCGCAGATATGGA		58	8343753	8343771	AATGCTCCTTATCGAGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL3	FBgn0020910	FBtr0082350	1	1	5	182	3R	7048285	7048303	ATCAACAAGAAGGAGGTGG		59	7048449	7048825	CAAGCTGATCGAAGAACAG		58	NA	Nonspecific
Drosophila melanogaster	50	Cap-H2	FBgn0037831	FBtr0082273,FBtr0082270,FBtr0082272	1	3	4	81	3R	6589610	6589631	GAACTGTTGCTAATCGATTCAG		59	6589671	6589889	GGCGTTGATCTTCTAAATCTG		59	NA	
Drosophila melanogaster	50	CG14683	FBgn0037822	FBtr0100412,FBtr0082267	3	2	2	60	3R	6523607	6523627	CCTAAACCCTACTAGACTGAG		58	6523648	6523667	AGTCGTCACATCTATAGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syn	FBgn0004575	FBtr0089476,FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471	2	5	5	80	3R	6041342	6042794	GTGGATGAGATATCCGAGC		59	6042837	6042856	ATACTCTCGTCCATCTTTGG		58	NA	
Drosophila melanogaster	50	CG8116	FBgn0037614	FBtr0081905	1	1	1	147	3R	4542947	4542966	TTAATCTAAACTACGGCGAG		57	4543582	4543601	GTTAATATTACGGATGCGGT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG11672	FBgn0037563	FBtr0081865	2	1	1	60	3R	4116092	4116112	ACAAACTATGGACCTGTTACC		59	4116052	4116070	TGACACTTACGGCAATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7549	FBgn0037559	FBtr0110951	1	1	3	89	3R	4083214	4084123	CGGTTTAGGTTTCAGTCTG		58	4084176	4084194	TTGTAGCTAATAGCCCGTC		58	NA	
Drosophila melanogaster	50	Tom34	FBgn0010812	FBtr0081788	1	1	1	80	3R	3860592	3860669	GGCCAGAGAAGGAATACTG		59	3860713	3860731	CACTCACATGATACTCGCT		59	NA	
Drosophila melanogaster	50	Sp7	FBgn0037515	FBtr0081740,FBtr0081742,FBtr0081743	3	3	4	93	3R	3586989	3587741	ACAAGGAAGTTGTAGGAATCC		59	3587795	3587814	ATAAGACTGCTGAATCACGG		59	NA	
Drosophila melanogaster	50	CG2656	FBgn0037478	FBtr0081568	2	1	1	127	3R	2971293	2976781	GAGGATTTCAGTTTGGTGAG		58	2976871	2976889	AAGTCCTTAACGTTCACGT		59	NA	
Drosophila melanogaster	50	CG31549	FBgn0051549	FBtr0078707	3	1	1	62	3R	1458676	1458696	GTGATTGTGACTGACATTCAC		59	1458720	1458738	GAGGAACTTGGCATAGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	7B2	FBgn0041707	FBtr0078789,FBtr0100112	3	2	2	70	3R	1203302	1203320	CAGGATAGTGCTGATGTGG		59	1203353	1203372	ATCTGCATGATGTACTGCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(3)82Fd	FBgn0013576	FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199	1	14	15	114	3R	1100031	1100465	GAGCACAACGTATTTGGTG		59	1099935	1099953	AATGGAACACCTTGAAGCT		59	NA	
Drosophila melanogaster	50	dpr16	FBgn0037295	FBtr0110950,FBtr0078772	3	2	2	132	3R	992138	992588	CAGCTGTTTGTGATAACACC		59	992680	992701	GGTACCAGAAGATATACTTGGG		59	NA	
Drosophila melanogaster	50	CG1090	FBgn0037238	FBtr0078912	2	1	2	110	3R	189422	189442	CTTATCCTCCACATACTGGTG		59	189514	189952	CGATAGCTTTAGCTCCTCG		59	NA	
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338	3	5	15	173	3R	110113	120854	TTAAGTGCCGTTAAAGGAGG		59	120990	121008	CTTATCGCGAATGTCTTGC		59	NA	
Drosophila melanogaster	50	CR33701	FBgn0053701	FBtr0091689	1	1	1	60	3L	9506839	9506858	AGTTTCGAACTCAACTTGTC		58	9506798	9506819	TGAAGAGATAAAGTCGGTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pncr009:3L	FBgn0062928	FBtr0091951	1	1	1	85	3L	19480823	19480841	CAGAAGGTGGACTAAATGC		58	19480331	19480777	CATATTGGACTAATCTACCCAC		57	NA	
Drosophila melanogaster	50	Act79B	FBgn0000045	FBtr0078478	3	1	1	81	3L	21979362	21979743	TACCATGTATCCAGGTATCG		58	21979784	21979805	GATGATCTTGATCTTGATGGTG		58	NA	
Drosophila melanogaster	50	Nopp140	FBgn0037137	FBtr0089579	2	1	2	163	3L	21827775	21827793	GTGACTCTGGTGAAGAGTC		59	21827919	21828179	GTCATTCTTCTGTTGCTCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	CycH	FBgn0022936	FBtr0078439	3	1	1	107	3L	21816055	21816073	GTGAAGCAATATCAGCAGC		59	21816140	21816220	CTCCTTATAGAGTTCGCTATCAG		59	NA	
Drosophila melanogaster	50	CG32445	FBgn0052445	FBtr0078425	3	1	1	94	3L	21632800	21632818	ATACTTCTTTGGAGCCACC		59	21632876	21632894	AGTTTCGACTCACACTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11307	FBgn0037106	FBtr0078420,FBtr0078421	1	2	2	167	3L	21612250	21612329	AATTTCAGAAACAGCCGAC		58	21612460	21612478	CTTAAGGACGACTTGACGT		59	NA	
Drosophila melanogaster	50	Mkrn1	FBgn0029152	FBtr0078383,FBtr0078384	2	2	2	69	3L	21524869	21524890	CAGAGCCAGAATGAAATAATCG		59	21524637	21524656	GATAATCTCGCCGATCTACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32440	FBgn0052440	FBtr0078345	3	1	1	151	3L	21353509	21353527	AATAATGAACTGCCCACCA		59	21354060	21354078	ATATCAAACACGCTCTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32436	FBgn0052436	FBtr0078343	2	1	1	84	3L	21343555	21343661	CGTTTGCAGTACTATTATCGG		58	21343707	21343725	AGAAATCGGGATTCAAACG		58	NA	
Drosophila melanogaster	50	Cpr78Cb	FBgn0037068	FBtr0078337	1	1	1	67	3L	21288921	21288939	CCTTCAAGACCAGTAATGG		57	21288970	21288988	ATAGATGCCAATGGTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AcCoAS	FBgn0012034	FBtr0078413,FBtr0100592,FBtr0078414	1	3	3	83	3L	21265831	21265849	TCTAAAGCACAACCTGAGC		59	21265711	21265729	TTGTAATACCAGAGCCAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9391	FBgn0037063	FBtr0078416,FBtr0078417	2	2	2	125	3L	21260335	21260354	TTACCAGTGAATTCGGTACC		59	21260168	21260186	TCGACATATTGAGAGCTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	fbl	FBgn0011205	FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188	2	4	5	149	3L	20381809	20381827	CAAGCTGGTCTACTTCGAG		59	20381939	20383026	ACATTGTCCATCTGTAGGTG		59	NA	
Drosophila melanogaster	50	hale	FBgn0036924	FBtr0074912	3	1	1	83	3L	19978505	19978523	CTGTACCCAGTTCAATGGT		59	19978440	19978458	TATGGATTGGCACTAGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Su(z)12	FBgn0020887	FBtr0074917,FBtr0074916	2	2	2	118	3L	19914078	19914161	GTCACAACAGACTCTACCA		58	19913978	19913996	CATCTGGATGGTCTTCTGG		59	NA	
Drosophila melanogaster	50	CG14100	FBgn0036889	FBtr0074971	1	1	1	60	3L	19582581	19582599	ACCAGACCATTGACTATGC		59	19582539	19582560	CCAATAATGAGCAAGTTATGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075008	1	1	11	84	3L	19297287	19297305	TAACCCTGACTGTTCTCGA		59	19297155	19297173	GTGATCTTGCTATTGTGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Eip75B	FBgn0000568	FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149	1	4	4	110	3L	17948398	17948416	AGATGGATATCGTTGGCTC		58	17948141	17948324	TGAGTATTCCGATCTGCTG		58	NA	
Drosophila melanogaster	50	CG32169	FBgn0052169	FBtr0113428,FBtr0075285	2	2	3	81	3L	17061139	17061157	TGATCTAACCAATGGGCAG		59	17060462	17061097	CTGATAGTTGTTCATCACTGAC		58	NA	
Drosophila melanogaster	50	CG14059	FBgn0036690	FBtr0075289	2	1	1	157	3L	17023349	17023367	AAGCATCACTACATCAGCC		59	17023210	17023228	GAGTGATCCCTCTTGAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11915	FBgn0036673	FBtr0075259	2	1	1	176	3L	16895146	16895164	AACAACTTTCCAAGGAGCA		59	16899995	16900013	CTAAATTCGTGTACAGCGT		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG13040	FBgn0036608	FBtr0075431	1	1	1	87	3L	16318317	16318335	CAGAAGACCATCATCACCC		59	16318248	16318266	AATGATGGTAGACATGGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pHCl	FBgn0036542	FBtr0100037,FBtr0100036	2	2	4	85	3L	15853122	15857081	TAGATCGATGATAGGCGTG		58	15853055	15853073	GATTAGAAACAACCGGCAG		58	NA	
Drosophila melanogaster	50	CG13460	FBgn0036471	FBtr0114510	3	1	1	60	3L	15054440	15054459	ATCCTATGGATCCTATGGCT		59	15054399	15054419	GTTATTATTCCAGTAGCTGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nuf	FBgn0013718	FBtr0100039,FBtr0100040	2	2	6	139	3L	14193538	14193847	CACCTCAAGATGATGACGA		59	14206189	14206210	GCTCGATGATCTATAGAGTTGG		59	NA	
Drosophila melanogaster	50	CG13738	FBgn0036390	FBtr0075790	3	1	1	68	3L	13966341	13966360	GTTTACCAGGTGGTCTACTG		59	13966292	13966310	ATTTCTCACGGTGTTCGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	stv	FBgn0086708	FBtr0075806,FBtr0075809,FBtr0075807	2	3	5	84	3L	13474163	13474181	GACATGGACAACATGTTCC		58	13474229	13474325	GGAAACCAAAGTGTGAGTC		58	NA	
Drosophila melanogaster	50	CG34428	FBgn0085457	FBtr0112729	2	1	1	87	3L	13055549	13055624	CATATTACTCACACCCTCCTC		59	13055673	13055691	GGATTGTCCCATCTTCTCC		59	NA	
Drosophila melanogaster	50	NijA	FBgn0036101	FBtr0089569,FBtr0089570,FBtr0089571	1	3	3	148	3L	10687816	10688131	TATTCCAGATTGCTGTGGG		59	10687686	10687707	GGCTGATATTAGAACATTGACC		58	NA	
Drosophila melanogaster	50	simj	FBgn0010762	FBtr0076262,FBtr0076263	1	2	3	120	3L	10681692	10681791	TTAGAGCTTTGGGACAAGG		59	10681875	10682038	TTATTGTTGAAGGCTGCCA		59	NA	
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076331,FBtr0076333,FBtr0076335	1	3	8	246	3L	9817658	9817676	CGATCAAATAACGAAGCCC		58	9823879	9824111	ATAAATGGGACCCTGAGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8177	FBgn0036043	FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326	2	11	11	88	3L	9773790	9773876	CTCATGAGATCTTTGTGCA		57	9773928	9773946	CTCATACTTGATCCAACGG		57	NA	
Drosophila melanogaster	50	CG6767	FBgn0036030	FBtr0076416	1	1	2	130	3L	9679555	9681640	GAAATTTAGGAGTCGTGCG		58	9678124	9678145	CAACTGGTATATCAAAGAAGCC		59	NA	
Drosophila melanogaster	50	CG3408	FBgn0036008	FBtr0076426	1	1	1	109	3L	9501402	9501420	GGTACTTAGACCTGAAGGG		58	9501225	9501330	GATGCTGACTGTATTCTTGG		58	NA	
Drosophila melanogaster	50	Rdl	FBgn0004244	FBtr0076534	3	1	3	103	3L	9148400	9151048	TACCACAGGCAACTATTCG		59	9148315	9148335	TAATAACGATCAGTCCAGAGG		58	NA	
Drosophila melanogaster	50	bol	FBgn0011206	FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538	2	4	4	130	3L	9101077	9101096	TATACCCATGGATCAGTTCG		58	9100463	9100724	TGGTGGGTACATTCATTGG		59	NA	
Drosophila melanogaster	50	GNBP3	FBgn0040321	FBtr0076510	2	1	1	60	3L	8949197	8949216	CCAGGTACTGGAAATAACTC		57	8949239	8949257	ATTCGAGGGTGTAATTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6416	FBgn0035917	FBtr0089568,FBtr0089565	1	2	8	177	3L	8627795	8627813	GACACGACTACCATGACAG		59	8628172	8631265	TACTGGTTTGGAACTGTGG		59	NA	
Drosophila melanogaster	50	Idh	FBgn0001248	FBtr0114548,FBtr0076673,FBtr0114549	1	3	9	285	3L	8351772	8351790	TAATACCCACATCCACACC		58	8350855	8350873	TATCGCGGTTCTCAATACC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	eIF4E-3	FBgn0035860	FBtr0076701	3	1	1	113	3L	8223294	8223371	AATAAGCTATCCCTTTGGACG		59	8223446	8223464	CACCTGGTACTGGATTTCC		59	NA	
Drosophila melanogaster	50	CG7498	FBgn0040833	FBtr0076731	3	1	1	81	3L	8148485	8148504	CATTAACGCGATCAAATGCA		59	8148423	8148441	TATCGAGCTGATGATGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112696,FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112697,FBtr0112702,FBtr0112698	1	8	10	91	3L	7703513	7703531	ATACTCGTGGAAAGGTCAG		58	7703375	7703459	ATGGTCATTATCGAGAAGCA		58	NA	
Drosophila melanogaster	50	CG7716	FBgn0035800	FBtr0076824	1	1	1	60	3L	7582629	7582648	TAAGGATAATGTTCGCTGTC		57	7582588	7582606	TTGCCTACCCAATAGTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8560	FBgn0035781	FBtr0076868	3	1	1	128	3L	7395851	7395869	CTCCTATGGCAACTACCTG		59	7395674	7395692	GTATACTTCGTTCCGGTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32412	FBgn0052412	FBtr0077080	3	1	1	95	3L	5894960	5894978	GTGCCATTCTGTTGAACAC		59	5894648	5894904	CGAAGAATATGAGCATAAGTCC		58	NA	
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112712,FBtr0112708	3	2	8	90	3L	5670040	5697034	TCATCAGAGATTTCGGACG		59	5697088	5697106	TATATGGTGACGCCATGAC		59	NA	
Drosophila melanogaster	50	Con	FBgn0005775	FBtr0073375	2	1	1	80	3L	4952942	4952960	CTGACGTTCTACACATTCC		57	4940096	4952898	GAATTTGTTGTCTGACACG		57	NA	
Drosophila melanogaster	50	dyl	FBgn0066365	FBtr0073341,FBtr0073343,FBtr0073342	1	3	3	300	3L	4298549	4298567	TAATGGCCATAGTCCTGTG		58	4296029	4296047	ATCATGCCGTAGAAAGGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1135	FBgn0035489	FBtr0073202	2	1	1	291	3L	4041686	4041763	TTAAGAGCTCGGAACAACC		59	4042017	4042036	ATATTACGTTTGTTGCGACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	ida	FBgn0041147	FBtr0073160,FBtr0073161	1	2	2	60	3L	3906264	3906282	GGAGATCATACACGACCTC		58	3906305	3906324	TTGATTCATATAGCCCAGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eip63E	FBgn0005640	FBtr0073132	1	1	11	95	3L	3516815	3552791	AAATGCTAAAGATGGCGTC		58	3552850	3578292	ATTGTTAATCTGCCGAAGC		58	NA	
Drosophila melanogaster	50	CG14966	FBgn0035415	FBtr0073108	1	1	1	60	3L	3197236	3197254	ACTGGTCAAGTTTCTGTCG		59	3197194	3197212	CTTGTCCAAAGAAACGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	prominin-like	FBgn0026189	FBtr0073120,FBtr0073119,FBtr0073118	3	3	3	90	3L	3118970	3119051	CCTGCTTCTAGCCATACTG		59	3118898	3118916	GTAGGTTACCATACCCAGC		59	NA	
Drosophila melanogaster	50	CG32487	FBgn0052487	FBtr0073007	3	1	1	60	3L	3016986	3017004	ATAACTCAGTGACTTCGGT		57	3016944	3016962	ACCAAGAAACCCATTTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9972	FBgn0035379	FBtr0073011	2	1	1	103	3L	2886762	2886780	AGTTATCAGACACCCTTCG		58	2886397	2886695	TACAGAAGATACGTGGGTG		58	NA	
Drosophila melanogaster	50	CG14949	FBgn0035358	FBtr0072949	3	1	1	77	3L	2642639	2642657	AACTCCTAGAAACCCTTCC		58	2642580	2642598	TGCTCAGTTGATAGAAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1244	FBgn0035357	FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933	2	6	6	90	3L	2640506	2640585	TCTGTGGAAGGATGTACCA		59	2640639	2640657	CACTTGTAGGACAGGTGAG		59	NA	
Drosophila melanogaster	50	CG33232	FBgn0035347	FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920	2	4	4	87	3L	2495884	2495902	ACATTAGCTCCGAGTACAC		58	2495951	2496030	GCATTATGACCATATGACTCC		58	NA	
Drosophila melanogaster	50	ecd	FBgn0000543	FBtr0072903	1	1	1	60	3L	2265110	2265130	GCAACGTATACGAATGAATCC		59	2265070	2265088	AATGCACGACTGTATCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	drpr	FBgn0027594	FBtr0072799	3	1	2	154	3L	1723770	1723789	TATTGTGAGGGACTGTTGTG		59	1720161	1723590	GTGGGCAATTTATATCGCAG		59	NA	
Drosophila melanogaster	50	CG7971	FBgn0035253	FBtr0100219	2	1	5	102	3L	1656993	1657012	CTCTATTTCCTCTGAGCTGC		59	1655009	1656928	TTCCTGAGTCAGTTTGGAC		59	NA	
Drosophila melanogaster	50	n-syb	FBgn0013342	FBtr0072819	3	1	5	168	3L	1636902	1636921	TGCATAGAGTACCTTCATCC		58	1635945	1635964	GTTCTTGTCTTTCTTTCCCA		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	GC	FBgn0035245	FBtr0072821	1	1	1	187	3L	1624587	1624680	GTTTGTAATAGGCATGTTTCCC		59	1624421	1624439	CACAGTAGGCAAGGATGAG		59	NA	
Drosophila melanogaster	50	Cct1	FBgn0041342	FBtr0072741,FBtr0072739,FBtr0072738,FBtr0072740	3	4	4	133	3L	1551681	1551701	CAACGTGTACTTAATTGTGGG		59	1551796	1551877	CATTCTGGACGATCTCGTC		59	NA	
Drosophila melanogaster	50	Trh	FBgn0035187	FBtr0072638	1	1	1	92	3L	1191110	1191187	CAAGGAGCAAATGAGAGCT		59	1191036	1191054	TTCGACAGGACTTCAACAC		59	NA	
Drosophila melanogaster	50	CkIIalpha-i3	FBgn0025676	FBtr0072604,FBtr0072603	3	2	2	81	3L	709486	709566	TGTAAGCTTGCAACAAAGC		59	709423	709441	TGGACGATTCTTAGTCAGC		59	NA	
Drosophila melanogaster	50	CG13875	FBgn0035104	FBtr0072476	3	1	1	80	3L	181024	181043	ATTTGGATAGTAGTGCCAGG		59	181084	181163	GAAGATGTAGCTGGTATTCCT		58	NA	
Drosophila melanogaster	50	CR12953	FBgn0033997	FBtr0087364	3	1	1	60	2R	11093524	11093544	CAAGCCAATCTTCAGATTCTC		59	11093564	11093584	CATGGGATAGCCTATAATCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33364	FBgn0053364	FBtr0086356	1	1	1	62	2R	15649668	15649686	AATACATCGGTTCTCGTCC		59	15649624	15649642	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	egg	FBgn0086908	FBtr0112777	3	1	1	81	2R	20665803	20665875	GACTATGTGCATGAAGTTCC		58	20665741	20665762	TCTTAACAGCGTAGTATGTCTC		59	NA	
Drosophila melanogaster	50	Start1	FBgn0035028	FBtr0089867	1	1	2	131	2R	20464512	20464531	GCGAATAACATGACGAAACC		59	20464625	20464688	AAGAGTCAACCGACTTGTG		59	NA	
Drosophila melanogaster	50	Ssl	FBgn0015300	FBtr0072352,FBtr0072351	2	2	2	170	2R	20387261	20387280	AAGATCTATTGCCCTAGCTG		58	20387050	20387128	CTGGAAGCCATAGATACGG		59	NA	
Drosophila melanogaster	50	CG13590	FBgn0035012	FBtr0072353	1	1	1	132	2R	20381070	20381088	ATCTGGTACATGATCCGGA		59	20380904	20380924	CGACCATTAGTAGATAGTCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG11293	FBgn0034889	FBtr0072081	1	1	1	78	2R	19574651	19574669	CTACTCGGATCAGAGTGTC		58	19574780	19574798	CTGGAACTCCTCCTTACAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17664	FBgn0034883	FBtr0072107,FBtr0072108	2	2	2	65	2R	19491491	19491510	GATGACCACTGGATCTACTG		59	19491445	19491463	CTTGTAGATCACCGAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13557	FBgn0034867	FBtr0072019	3	1	1	90	2R	19363882	19363901	TATTTCTTCTGGGTCTTGCA		58	19363811	19363829	TAGTACTGTTTGTGCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3788	FBgn0034800	FBtr0071995	1	1	1	80	2R	18820695	18820713	CCTGACATACTCTACCACC		58	18820562	18820652	GCATACAAACCTCACATCAC		59	NA	
Drosophila melanogaster	50	CG9825	FBgn0034783	FBtr0071893	2	1	1	85	2R	18725371	18725446	CGAACTTTCCGGAATACGA		59	18725494	18725513	GAATTGCGTTAGGATGTAGC		59	NA	
Drosophila melanogaster	50	stl	FBgn0086408	FBtr0113110,FBtr0071885	3	2	2	147	2R	18701222	18701298	AGGATTTCCTAATGGATCCC		58	18701408	18701426	ATGAAGTTCTTCCCAAAGC		57	NA	
Drosophila melanogaster	50	Oatp58Dc	FBgn0034716	FBtr0113105,FBtr0071777	2	2	2	81	2R	18113473	18113491	TCGCTATACTACACGTTGG		58	18112904	18113429	ATGAAAGACTCAACAAAGCC		58	NA	
Drosophila melanogaster	50	CG13492	FBgn0034662	FBtr0071741	3	1	2	150	2R	17709902	17709986	AATCGTGAGATCTTCCCTG		58	17709770	17709788	TAACATTTCCGGAAAGCAG		58	NA	
Drosophila melanogaster	50	CG15676	FBgn0034651	FBtr0071668	2	1	1	60	2R	17559509	17559527	TCCTGACAAGGAAGTTCAC		59	17559550	17559569	GCTCACCCATCTGAATACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089710,FBtr0089703	2	2	9	130	2R	17399440	17399460	CCGTCTAGATCCTACAAACTC		59	17399676	17399909	GGAAGTACTTGACGTAGCC		59	NA	
Drosophila melanogaster	50	dom	FBgn0020306	FBtr0071604,FBtr0071602,FBtr0071603	1	3	3	80	2R	17218963	17218982	GACGGAATTACATTCCACAC		58	17219022	17219272	CGTCTCTAGATTTATTTGCGTG		59	NA	
Drosophila melanogaster	50	CG4279	FBgn0034600	FBtr0071628	3	1	1	173	2R	17057740	17057820	CTACTGGGCGAAATAGACC		59	17057585	17057606	GTTGATTATGTTGGCATCTACG		59	NA	
Drosophila melanogaster	50	rig	FBgn0050149	FBtr0086252	1	1	1	81	2R	16522392	16522469	AACCGAGTTGACCAATCTG		59	16522329	16522347	GCGTAATTTGAACGTGGAC		59	NA	
Drosophila melanogaster	50	CG30148	FBgn0050148	FBtr0086266	2	1	1	60	2R	16434931	16434949	AAGCTAAACGAGGAGTTCG		59	16434889	16434908	CTTTCGGAATATCCCTGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10444	FBgn0034494	FBtr0086305	1	1	1	60	2R	16161479	16161497	GTGATCAACATTGCCTACG		58	16161437	16161457	AAACAGGAAGGAAGAAGTACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11208	FBgn0034488	FBtr0086322	3	1	1	98	2R	16130608	16130689	TCTTACCCAAATCACACCA		58	16130528	16130546	ATCTCTGTGCAGAAGTAGC		59	NA	
Drosophila melanogaster	50	hrg	FBgn0015949	FBtr0111010,FBtr0086484,FBtr0086483	1	3	3	86	2R	15554704	15554780	GATTTCAAGTCTGGGATCC		57	15554636	15554654	AATTCTGTTGTGGGTATGC		57	NA	
Drosophila melanogaster	50	par-1	FBgn0026193	FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457	3	11	15	113	2R	15365201	15366256	TTCACTCTGGTCAAACCAG		59	15366332	15366351	AGAGTTTGGAGAAGAAGCTC		59	NA	
Drosophila melanogaster	50	Spt5	FBgn0040273	FBtr0086531	1	1	2	176	2R	15327473	15327492	GAAACTGGCCTCATTATTCG		58	15327631	15327708	ATTCTGGGAATCCAGTTGC		59	NA	
Drosophila melanogaster	50	wbl	FBgn0004003	FBtr0086510	2	1	1	70	2R	15137581	15137599	GGACTATGGAGAACTGGAG		58	15137837	15137855	TACTCGGGAAGTTCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp12b2	FBgn0034387	FBtr0086609	2	1	1	84	2R	14643157	14643176	AGAGCTTGAACTACTATCGC		59	14643223	14643299	CATTCCTGACCCTGATCAG		59	NA	
Drosophila melanogaster	50	CG15087	FBgn0034380	FBtr0086647	3	1	1	81	2R	14596612	14596682	ACATACTGATTGCTCTGGT		58	14596549	14596567	CATATCTCAGTTTCGTGGG		57	NA	
Drosophila melanogaster	50	CG10934	FBgn0034263	FBtr0086859	3	1	1	61	2R	13610346	13610364	ATAATGGTCACTCATGCCC		59	13610388	13610407	TCATAGTATCTGTACGTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	POSH	FBgn0040294	FBtr0086828	3	1	1	175	2R	13458660	13458745	AGTACATGTAAGATCCGGC		58	13458884	13458902	GTTCCTTGCTTCCTTTCAC		58	NA	
Drosophila melanogaster	50	l(2)k01209	FBgn0022029	FBtr0086914,FBtr0086912,FBtr0086913,FBtr0086915	2	4	4	95	2R	13311459	13311541	TTCGTCATAGGAATCTGCG		59	13311600	13311618	CAACAGTGTTACCCATGGA		59	NA	
Drosophila melanogaster	50	CG15605	FBgn0034196	FBtr0087002	1	1	1	60	2R	13014416	13014434	GTAAAGAGGGACAAGGCAG		59	13014374	13014393	AATCCCTAAAGTATCGAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15611	FBgn0034194	FBtr0086982,FBtr0086981	2	2	2	87	2R	13000831	13000850	CTTCTATTGCTATGTGAGCT		57	13000900	13000981	TTGATATGTCTGCAACCAC		57	NA	
Drosophila melanogaster	50	CG6665	FBgn0034172	FBtr0087054,FBtr0087053	2	2	2	62	2R	12845152	12845170	CAACATGGAACAGCTTTCG		59	12845196	12845214	CAAGTAAGTACTCCTCCGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vkor	FBgn0053544	FBtr0091510	1	1	1	60	2R	12666171	12666189	ATCCTGTACTTCTTGAGCT		57	12666268	12666286	CTATCAATTGGACCAGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	Acp53Ea	FBgn0015584	FBtr0087080	3	1	1	60	2R	12637414	12637433	ACTCAAGGAATCAGTGAGAC		59	12637373	12637391	GCATTTGTTGGTCTCAAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sema-2a	FBgn0011260	FBtr0087089,FBtr0087090,FBtr0087091,FBtr0087088	1	4	4	90	2R	12416665	12416686	CTGATCTGTATAATACTTCGGC		58	12416737	12416873	AAGTTTGGTTTGTCCAACC		58	NA	
Drosophila melanogaster	50	Menl-2	FBgn0029153	FBtr0100603	3	1	3	130	2R	12302914	12302932	GAACTACTTGACGAAGGCA		59	12302802	12302820	GACGCAGTTTGTATTACCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha44	FBgn0020611	FBtr0087175,FBtr0087173,FBtr0087176,FBtr0087174	2	4	4	84	2R	12214367	12214385	ATTTGGTCAAGAAGGAGCA		59	12214239	12214319	TCATTAGCCATGACCTTGG		59	NA	
Drosophila melanogaster	50	CG15705	FBgn0034104	FBtr0087137	1	1	1	60	2R	12168647	12168667	GATTACATGAAGTATCCCAGC		58	12168689	12168707	ATGGTTTAACGCCTTTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12970	FBgn0034047	FBtr0087289	3	1	2	116	2R	11743968	11743989	TAAGCTCAAGGTATCAATTCCC		59	11744066	11744144	TCCAGAATGACATTGCCTG		59	NA	
Drosophila melanogaster	50	CG30472	FBgn0050472	FBtr0087360	3	1	1	97	2R	11310941	11311016	TCCATCATTGACTCTGGAG		58	11310862	11310881	TTTCGGTGTATGAGTTACAC		57	NA	
Drosophila melanogaster	50	CG34123	FBgn0083959	FBtr0114580,FBtr0114579,FBtr0110833,FBtr0113485	2	4	6	80	2R	11152374	11152394	ACGACTATATGATTCTGGAGG		58	11152253	11152333	ATACACCAATCTCGAATCCC		59	NA	
Drosophila melanogaster	50	tra2	FBgn0003742	FBtr0089617,FBtr0089620,FBtr0089615,FBtr0089619,FBtr0089616,FBtr0089621	1	6	7	140	2R	10490376	10490678	GATTGACGCACAAACACAG		59	10490254	10490274	TGGGTTATAGAGAAATCGACG		59	NA	
Drosophila melanogaster	50	cnn	FBgn0013765	FBtr0087705	1	1	5	156	2R	9331805	9331826	GTTGAATTAGAAGCCTGTAGGA		59	9331602	9331688	TGATTGTGGCTTCCAAGAG		59	NA	
Drosophila melanogaster	50	bic	FBgn0000181	FBtr0087783,FBtr0087782	2	2	2	142	2R	8757979	8757997	GAAGAAGATCGTCCACTCC		59	8758102	8758121	GATTGTTGAAGTGGATGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL18	FBgn0026741	FBtr0087852	3	1	1	78	2R	8644139	8644157	TGAATACGTGATCAACCGG		59	8644199	8644217	CTCCAGATGATAGCCTACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18343	FBgn0033683	FBtr0087982	2	1	1	72	2R	8026465	8026483	TCCATGTACTCTGTTCTGG		58	8026519	8026537	AAAGTATTGCGTAGCACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nompA	FBgn0016047	FBtr0089382,FBtr0089381,FBtr0089379,FBtr0089380	3	4	4	81	2R	7202468	7202541	GGGCAATGAATATGATCGT		57	7202405	7202423	ATATCGGGATCCATAACGA		57	NA	
Drosophila melanogaster	50	skf	FBgn0050021	FBtr0114569,FBtr0114570,FBtr0088196	1	3	3	95	2R	7117505	7117524	ATAAGCAAGGACAGTGACTC		59	7117366	7117447	ATCAGCTTGGAAAGAGCAG		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	shn	FBgn0003396	FBtr0088099,FBtr0088100,FBtr0088101,FBtr0088098	2	4	4	102	2R	7098298	7098383	TGGCAAGCAAGTAAATGTG		58	7098446	7098467	CTTCTTCTGCAACAATATCTCC		59	NA	
Drosophila melanogaster	50	Cyp12d1-p	FBgn0050489	FBtr0089419	2	1	1	87	2R	7008750	7008768	ATCTTTATGCAACCCAGGG		59	7008617	7008699	GGATTTCCTTAATGCGCTC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG12938	FBgn0033554	FBtr0088248	2	1	1	60	2R	6708896	6708916	CCTTTGATCACTTTATGGTGC		59	6708856	6708874	AAGTACGAAGGTATGTGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7220	FBgn0033544	FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217	3	5	5	110	2R	6624695	6624713	CCATGTTGAGTAGTTGTCG		58	6624787	6624870	CAGAATCATCGTGGTACCA		59	NA	
Drosophila melanogaster	50	CG7220	FBgn0033544	FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217	2	5	5	110	2R	6624696	6624714	CATGTTGAGTAGTTGTCGC		58	6624788	6624871	ACAGAATCATCGTGGTACC		59	NA	
Drosophila melanogaster	50	Rab3	FBgn0005586	FBtr0088257	1	1	1	70	2R	6612331	6612349	GTATTTCGGCACGATAAGC		59	6611841	6611859	ATAGTTCTGTACCGCTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12895	FBgn0033523	FBtr0088314	3	1	1	215	2R	6324653	6324671	TTGTGGACTACGATGATCC		58	6324394	6324412	TGACACCATTGATCAACTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG12130	FBgn0033466	FBtr0088385	2	1	1	148	2R	5848194	5848273	CCAAGCTAAACAACACTTACG		59	5848383	5848401	ATCAAATGTGGTCTGTCCC		59	NA	
Drosophila melanogaster	50	CG1516	FBgn0027580	FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461	2	9	9	91	2R	5738884	5738970	GAAGCCGTTAAGGAGATCC		59	5738811	5738829	ATATCGATGACAGTTCCGG		58	NA	
Drosophila melanogaster	50	brp	FBgn0086376	FBtr0111001,FBtr0113488	2	2	2	238	2R	5424009	5424027	TGGAGAAGTCCCTACAGAC		59	5424438	5424530	GATCTTTAAGGCTTGTTGCA		58	NA	DesignRelaxed
Drosophila melanogaster	50	TXBP181-like	FBgn0026326	FBtr0088599	1	1	1	141	2R	5176980	5176998	AATTAGAGTCCGCCAATGG		59	5176796	5176876	CTCGATATGCGATAGTTGCT		59	NA	
Drosophila melanogaster	50	CG8046	FBgn0033388	FBtr0088621,FBtr0088620	3	2	2	81	2R	5051520	5051597	GATCTTACAGGATGATTGCCT		59	5051459	5051478	TCGTATGCATAACCAGAACC		59	NA	
Drosophila melanogaster	50	CG8237	FBgn0033350	FBtr0088653	3	1	1	60	2R	4813613	4813631	GCTACGAGTACGTTCTGTC		59	4813655	4813673	AACATATCGATGGTCTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30354	FBgn0050354	FBtr0088702	3	1	1	60	2R	4565031	4565049	GGAATTGTTCGACTTCGTC		58	4565072	4565091	TTTCGAGAAGAGACTGTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)44DEa	FBgn0010609	FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426	2	9	9	94	2R	4568146	4568164	AGATCAAGACCTGCTTGTG		59	4568222	4568303	GGTCATATCACGGTAGTCC		58	NA	
Drosophila melanogaster	50	LvpH	FBgn0002570	FBtr0088759	3	1	1	69	2R	4337534	4337552	CAACATTCAGGCAATCGAC		59	4337421	4337439	TACATAGAGATCGCTTCCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	sut1	FBgn0028563	FBtr0088777	2	1	1	166	2R	3972207	3972225	TTTGGTGTAATCAGACCCT		58	3972355	3972567	AAGAAAGCATGCTTTCCTG		58	NA	
Drosophila melanogaster	50	slv	FBgn0025469	FBtr0088824	1	1	1	124	2R	3969001	3969377	GGATTCTTATCGTGCAGCT		59	3968895	3968916	GTAAACACATAGTAGATCAGCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Dgk	FBgn0085390	FBtr0112581,FBtr0112579,FBtr0112580	3	3	4	164	2R	3732585	3732603	GAAGTTCCAGTACATGCTC		57	3732249	3732396	AACTCTATGGAGTCCATGG		58	NA	
Drosophila melanogaster	50	CG12822	FBgn0033229	FBtr0088842	3	1	2	104	2R	3720673	3720745	TTGACTCAGGAAGAACCTC		58	3720813	3720831	CTCCATACAGTTCCAGGTC		59	NA	Nonspecific
Drosophila melanogaster	50	Corin	FBgn0033192	FBtr0088909,FBtr0088908	1	2	2	80	2R	3446452	3446472	ACAGATTCCCTACAACTACAC		59	3446514	3446589	GAATCCAAGTCCGTTTGAG		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111092,FBtr0111093,FBtr0089020,FBtr0111096,FBtr0111095,FBtr0111091,FBtr0111094	3	7	60	84	2R	3249360	3253455	CGAATACGATGGAAAGTACCT		59	3249296	3249314	GTAGCTCTTGTATCCGTCC		59	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0111070,FBtr0111098,FBtr0111062	1	3	60	84	2R	3238142	3238160	TTCCTATACACGGTCTGTG		58	3236471	3238096	CTTGTACCATCTCATAATGGG		57	NA	
Drosophila melanogaster	50	CG33914	FBgn0053914	FBtr0091918	3	1	1	144	2R	2924977	2924995	GTATCGTGGAGTACTGTGC		59	2924769	2924787	TTCATCGTATGGAGGAAGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tsp42Ea	FBgn0029508	FBtr0086172,FBtr0086171,FBtr0086173	1	3	3	101	2R	2884280	2884299	GTAACGATGATCATCCTGGG		59	2884363	2884444	GATCGAGTACGTCATGGAC		59	NA	
Drosophila melanogaster	50	vimar	FBgn0022960	FBtr0086183,FBtr0086182	2	2	2	158	2R	2865096	2865204	TACTGGTGATGACTCAATGC		59	2864957	2864975	TGCTCCACAAAGTAGATGC		59	NA	
Drosophila melanogaster	50	CG14471	FBgn0033049	FBtr0085970	3	1	1	60	2R	1888231	1888249	AGCTATAGTCGCAACTCTG		58	1888272	1888291	GTTTAGTCTCCTCCTTTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17715	FBgn0041004	FBtr0111245	2	1	6	175	2L	22737571	22741711	TATACGAGAGTCAACTGGC		58	22741970	22742039	AATGCTGTACAATTGACCTG		58	NA	
Drosophila melanogaster	50	CG6448	FBgn0032976	FBtr0113046	2	1	5	108	2L	22155221	22155241	TCTCATCTGAATTCCACTCAG		59	22155311	22158162	AGTTACTTTCACTGGCCAC		59	NA	
Drosophila melanogaster	50	dia	FBgn0011202	FBtr0081411,FBtr0081410	3	2	2	112	2L	20765427	20765445	GATTGAACAGTTTGCAGCC		59	20765578	20765596	TGTCGGGTTTGATATCCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9319	FBgn0032881	FBtr0081460	2	1	1	60	2L	20751060	20751078	TAGATCTTAAGCCCGACGA		59	20751018	20751036	TCTGGAAGGGAAAGTACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ik2	FBgn0086657	FBtr0081389	2	1	2	81	2L	20677473	20677575	CTCCACGAACGATAGATCAG		59	20677619	20677637	GGGAGATCTAATTGCTGGG		59	NA	
Drosophila melanogaster	50	CG34007	FBgn0054007	FBtr0100062	2	1	1	69	2L	20495378	20495396	CTTATGTTGCCTGCTTCAC		59	20495429	20495447	TATTCCTGGTTCAGTTCGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	neb	FBgn0004374	FBtr0081332	3	1	1	60	2L	20089085	20089104	TCAATGAGACACTGAGTGAC		59	20089127	20089145	ATGGCACTCAGATTAAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hs2st	FBgn0024230	FBtr0081288	1	1	1	108	2L	19443926	19443944	AATTTAGTCCGCAAGAAGG		57	19443776	19443794	AGAAGAAGGGTATCTGCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	RanGap	FBgn0003346	FBtr0081234	1	1	1	149	2L	19446844	19446918	ATTGTCAACCAATTCACCG		58	19447029	19447049	CTTTGTCTTGATGGCATAGTC		59	NA	
Drosophila melanogaster	50	CG10602	FBgn0032721	FBtr0089314,FBtr0089315,FBtr0089317,FBtr0089316	1	4	4	104	2L	18856840	18856925	CTAAGGGAAGCCTTAACGT		58	18856754	18856772	TATAAGGATGCTCCTTGCC		58	NA	
Drosophila melanogaster	50	CG5681	FBgn0032658	FBtr0081024	1	1	1	60	2L	17987006	17987026	CTCAAATCGCAATAGGAACTG		59	17987047	17987066	CGTGCCTTTACCATATTACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31784	FBgn0051784	FBtr0080974,FBtr0080973	1	2	2	81	2L	17105833	17105851	ACCTCTCATTCTCACTCTC		57	17102625	17105789	GTATTGGAACACGAATTGTC		57	NA	
Drosophila melanogaster	50	mdy	FBgn0004797	FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917	2	4	4	87	2L	16820785	16820804	CATAACGCCCTAATCCTGAG		59	16820919	16825419	CAATTATTTCCATGGCTAGACC		59	NA	
Drosophila melanogaster	50	Mhc	FBgn0086783	FBtr0080904	1	1	13	126	2L	16770956	16770974	GGTGCTGATATTGAGACCT		58	16771130	16771950	GACAGTATTCTTTAACACCGG		58	NA	
Drosophila melanogaster	50	CycE	FBgn0010382	FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775	1	5	5	96	2L	15729492	15729576	ACATTTAGTCGGGAGATGG		58	15729414	15729432	AGATCACTCGGAAGAATGG		58	NA	
Drosophila melanogaster	50	CG15255	FBgn0028950	FBtr0080785	1	1	1	60	2L	15611495	15611513	GCAATGGCCTTATCAACAC		59	15611453	15611472	GATATCCTGTAGACCACCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15258	FBgn0032563	FBtr0080743	2	1	1	60	2L	15361548	15361566	AAGAAGTTCCCAGAGACAG		58	15361506	15361524	GAGTTGCGGGTTATTTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	yuri	FBgn0045842	FBtr0100611,FBtr0080709,FBtr0100610,FBtr0100612	3	4	7	87	2L	15258838	15258857	ATGATCAATAGCTACTCCGA		57	15258698	15258791	GGGATAGATCACAATTCTTCTG		58	NA	
Drosophila melanogaster	50	CG7532	FBgn0028915	FBtr0080640	3	1	1	112	2L	14349269	14349287	AGACCGGATTCGTTTACTG		59	14349175	14349195	CGCTAAACAAAGACTTGTAGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	B4	FBgn0023407	FBtr0080513	3	1	2	263	2L	13547145	13549134	AAGACGAAGTGTTAATCGAC		57	13535017	13546919	TCCATGCAGCCTTTAAGAG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG6043	FBgn0032497	FBtr0089911,FBtr0089910,FBtr0114471,FBtr0113039,FBtr0113040	3	5	5	142	2L	13276278	13276382	GCAACAACGATATGATGCC		59	13276488	13276506	TTTCAGGTGTTGTCATTGC		58	NA	
Drosophila melanogaster	50	CG5867	FBgn0027586	FBtr0080449	1	1	1	89	2L	13238890	13238908	GACCAAACTGGAGACTGAG		59	13238961	13239041	AAGATGACATCGTTCAGCA		59	NA	
Drosophila melanogaster	50	pdm2	FBgn0004394	FBtr0080393	2	1	2	240	2L	12678862	12678880	TACACAAACACAGCAATCG		58	12684616	12684634	CTCAGAGTCTAGTTCCCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	salr	FBgn0000287	FBtr0080235,FBtr0080236	2	2	2	120	2L	11372324	11372342	GAACTTCAGTTCGAGTTCC		58	11372425	11372533	CATATGGACCTTGAGATTCC		57	NA	
Drosophila melanogaster	50	RpL9	FBgn0015756	FBtr0080163,FBtr0080164	2	2	2	102	2L	11003232	11003523	AACATGATCAAGGGAGTCAC		59	11003149	11003167	CAATGACCGTGTTGTTCTC		59	NA	
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0100487,FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100489,FBtr0100486	1	8	10	80	2L	10806031	10806051	GCTACAGAAGGATCAAATCCT		59	10805730	10805989	TCCTGCACATATGTCTTCG		59	NA	
Drosophila melanogaster	50	me31B	FBgn0004419	FBtr0079976,FBtr0079975	3	2	2	89	2L	10240584	10240690	AAACAACTGATGTGACCGA		59	10240741	10240761	ATCCCTTCTCGAATATACCCA		59	NA	
Drosophila melanogaster	50	CG4908	FBgn0032195	FBtr0079950,FBtr0079949	2	2	2	60	2L	10223901	10223919	CTGCCTGCTAAACCTATCC		59	10223941	10223961	ATTCAGGAGATGATTGAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Try29F	FBgn0015316	FBtr0079764	2	1	1	60	2L	8998746	8998764	CAGGTGGCTAACATAAAGG		57	8998788	8998806	AGAAGTGATAGCTACGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Peritrophin-15b	FBgn0040958	FBtr0079714	3	1	1	73	2L	8394603	8394621	AGAACACTGGATTCGATCC		59	8394548	8394566	GGAACATGGAGGATACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13384	FBgn0032036	FBtr0079655	2	1	6	230	2L	8384884	8386223	AACCTTCAACAGATTCCCG		59	8386516	8386536	GTTATAGGACTTATCCGTCGA		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG14275	FBgn0032022	FBtr0079602,FBtr0079603	3	2	2	83	2L	8329717	8329735	CCTACGTCTATGCCATGTG		59	8332324	8332343	CATGCGAATTACACTGATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mcr	FBgn0020240	FBtr0079543	1	1	1	83	2L	8079818	8079836	AAGGGATTTGACAATCCCG		59	8079658	8079771	GTTTGATTGACGCGATAGC		59	NA	
Drosophila melanogaster	50	baf	FBgn0031977	FBtr0079535	1	1	1	106	2L	8029827	8029845	TTTGGGACAGTATCTGGTG		58	8029915	8029933	GACAGTTGTAGCAATCGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ntl	FBgn0031934	FBtr0079478,FBtr0079479	3	2	2	117	2L	7712414	7712487	GAGGAATTAAGTCGGTTGG		57	7712568	7712586	AACTTTATGCCTTTCCAGG		57	NA	
Drosophila melanogaster	50	Tsp	FBgn0031850	FBtr0079313,FBtr0079311,FBtr0114488,FBtr0079312,FBtr0079314	1	5	6	95	2L	6701751	6701769	ATCACTCTCACTCGATCCA		59	6700488	6700562	CGACGAGGTCTAATGTGTC		59	NA	
Drosophila melanogaster	50	CG9486	FBgn0031791	FBtr0079243	1	1	1	60	2L	6256176	6256197	GACAAGATACACAAGTTTCTGG		59	6256216	6256236	CGTAGTGCTTGAAGATATTGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ade2	FBgn0000052	FBtr0079220,FBtr0079221,FBtr0079219	3	3	3	128	2L	6042150	6042168	GAGGAGGGTGTCAATAGTG		59	6041977	6041995	AATTAGTCCGCGGTATTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11149	FBgn0031732	FBtr0079168,FBtr0079169	1	2	2	150	2L	5719427	5719525	AATGGTGGTATCACGTTGG		59	5719295	5719313	GTACACGTGAAAGGAGACC		59	NA	
Drosophila melanogaster	50	Msp-300	FBgn0053715	FBtr0091707,FBtr0091706,FBtr0091705	1	3	3	88	2L	5155462	5155480	TTTCTGTGAGAAGACCCTG		58	5155532	5155604	CATTGCGGAAATGAACCTC		59	NA	
Drosophila melanogaster	50	CG4230	FBgn0031683	FBtr0079019	3	1	1	276	2L	5097219	5097547	CAAGGATGATGGCTTTGAG		58	5097845	5097863	GATCTCCTCATCCGTAAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34126	FBgn0083962	FBtr0110840	3	1	1	81	2L	4991070	4991153	CGGATAATTATAGGCACAAGAC		58	4991195	4991213	ATGCTTATATCGTCCTGGG		58	NA	
Drosophila melanogaster	50	hoe2	FBgn0031649	FBtr0077394,FBtr0114514	3	2	2	80	2L	4935313	4935332	CTTTGGATTTCTGACTGTGC		59	4935175	4935272	GGAAGTATATCCTGGAACACC		59	NA	
Drosophila melanogaster	50	ine	FBgn0011603	FBtr0077448,FBtr0077446,FBtr0077449	2	3	4	142	2L	4473965	4474340	TAGTCTCAGGTTATCTTCCAG		58	4473843	4473861	GAAATGATAGGAACTGCCG		58	NA	
Drosophila melanogaster	50	CG15443	FBgn0031609	FBtr0077450	1	1	1	60	2L	4462153	4462174	TACTTCATGTACATAGTGCACC		59	4462114	4462132	GAGCATCTAACTTGTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL27A	FBgn0010410	FBtr0077452	1	1	1	84	2L	4457497	4457748	GTTAAATTCGGCTACTACAAGC		59	4457434	4457454	TCTTAGAGAAGTACTTGGCCT		59	NA	
Drosophila melanogaster	50	l(2)k16918	FBgn0021800	FBtr0077497,FBtr0077498	1	2	2	94	2L	3807048	3807142	TGGAAACTAGTGTTGCTGG		59	3807200	3807218	CTGGTCGTACATGAGATGG		59	NA	
Drosophila melanogaster	50	CG2983	FBgn0031472	FBtr0077620	1	1	1	60	2L	2848362	2848380	GCATGTATCTCATCGAACC		58	2848403	2848422	ATGTTCGAATCATAGTGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9967	FBgn0031413	FBtr0077799,FBtr0100648	3	2	2	123	2L	2309692	2310134	TTTCCTCAACGATTACAGCA		59	2309588	2309606	CTCCGGAGGATTATCATCC		58	NA	
Drosophila melanogaster	50	l(2)gl	FBgn0002121	FBtr0078166,FBtr0078171,FBtr0078170,FBtr0078167,FBtr0078168,FBtr0078169	2	6	6	90	2L	12208	12293	GACATTAATGGAGTTTCGTCAC		59	12139	12157	CTAAAGCAATACGCTGCAG		59	NA	
Drosophila melanogaster	50	CG14621	FBgn0031183	FBtr0077344	3	1	1	156	X	21847816	21847899	AAAGGTTCTCAAGGACACC		59	21848372	21848393	GGCAATAACTCGATAGTCTAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1702	FBgn0031117	FBtr0077310	3	1	1	83	X	20339661	20339679	TCATTATCTTCCGGCTGAG		58	20340068	20340086	TGAAGTCTTCGGTCAAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Obp19b	FBgn0031110	FBtr0077302	2	1	1	172	X	20288157	20288175	GATCAACATGATGTTCCCG		58	20288681	20288699	CTCATTCCTTGATCTCGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089400,FBtr0089398,FBtr0089405,FBtr0089406,FBtr0089399,FBtr0089407,FBtr0089403,FBtr0089409,FBtr0089402,FBtr0089408,FBtr0089401,FBtr0089397,FBtr0089404	2	13	13	101	X	20100288	20100306	ATATCCACGCACTACAACC		59	20100138	20100223	CTTTGTGTCCTTTAGCGAC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14213	FBgn0031047	FBtr0074743	2	1	2	80	X	19533364	19533382	CATATGAATCCTCAGCAGC		58	19533426	19533496	ATTGATCCACTGGTACACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15865	FBgn0015336	FBtr0074375	3	1	1	60	X	16557725	16557872	CATCTTCGAAGAGTCCACC		59	16557683	16557703	TTCTCAAAGACCACATAGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lsd-2	FBgn0030608	FBtr0073967	2	1	3	261	X	14968211	14968229	CCAGGAGATCTACAACCAG		58	14967423	14967989	ATCATTATCTTCCTCGACATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Ptp10D	FBgn0004370	FBtr0073525,FBtr0073524,FBtr0073522	2	3	3	90	X	11518239	11558771	TTACACTAAAGGACGTTCGA		58	11558824	11558842	TAGTCCAGTCGATAGGAGG		59	NA	
Drosophila melanogaster	50	CG2972	FBgn0030177	FBtr0071430	3	1	1	74	X	9977537	9977555	CATTAAACACTGCGTGGAG		59	9977592	9977611	ATCACTTTCAGATCGATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34028	FBgn0054028	FBtr0100083	3	1	1	171	X	9405638	9405726	AAACAAACGTGGACATATCG		58	9405860	9405878	AGATATTAACCTCGCCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rdgA	FBgn0085373	FBtr0112550,FBtr0112552,FBtr0112551	2	3	3	115	X	8918161	8918303	TCTCAATATGTTACGTGCAC		57	8918381	8918399	ATTTGACAATGTCCCTGTG		57	NA	
Drosophila melanogaster	50	Tre1	FBgn0046687	FBtr0070848	1	1	1	88	X	5568181	5568268	AATCGCAACTACAGAGTGG		59	5568111	5568129	TAGTTTCTACTCGGCATCG		58	NA	
Drosophila melanogaster	50	pon	FBgn0025739	FBtr0070681	3	1	1	199	X	4530752	4530770	CAAGTCCATAGCTGATCTG		57	4530932	4531145	CCTCATATGGATTGAACTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Crg-1	FBgn0021738	FBtr0070599	3	1	1	261	X	3689012	3689030	CTCTGATTTGTGCGTTCTC		58	3689254	3690704	GGAAGTAGATGCGATATCCA		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG14815	FBgn0023516	FBtr0070367	3	1	2	79	X	1762864	1762883	TATTATTAGAGCGCTGTGCA		59	1762732	1762822	TGGAGATGCTACGTAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9717	FBgn0039789	FBtr0085679	1	1	1	70	3R	26410832	26410850	GTCTTCATCCTCTACCAGG		58	26410589	26410798	TTCAGACCAGTAGTTGTCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15531	FBgn0039755	FBtr0113309,FBtr0085572	2	2	2	111	3R	26021245	26021263	GGTCTTCTGAAGTACTCGC		59	26021090	26021171	ACAGCAGGACATAGAATCTC		58	NA	
Drosophila melanogaster	50	Bub3	FBgn0025457	FBtr0085465	2	1	1	65	3R	25500775	25500846	CCTTCATGGACATAGTGCA		59	25500728	25500746	TGACATCAAAGAGACGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1894	FBgn0039585	FBtr0085290	2	1	1	79	3R	24310405	24310423	TAAAGTATCAGCCGTTGGG		59	24310466	24310565	ATTAGTCAATTGCAGGGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12250	FBgn0039345	FBtr0084895	1	1	2	100	3R	21434507	21434594	GTTAAGAAAGAATCTGGTACCG		58	21419451	21419469	AAATCGCAATAATGGGCAC		59	NA	
Drosophila melanogaster	50	AP-1sigma	FBgn0039132	FBtr0084496	3	1	1	98	3R	19785069	19785087	ATTCATCGCTATGTGGAGC		59	19785213	19785234	CTCATCCAGGATAAAGTATGCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	Aats-glupro	FBgn0005674	FBtr0084512,FBtr0084511	2	2	2	208	3R	19779100	19779185	CAGTGGAATAACGTTGTCC		58	19778910	19778928	TTCTCCTTCTCAGTCTTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Tango12	FBgn0051052	FBtr0084367	2	1	1	98	3R	18812460	18812536	CTGTTCCTCAGGGAAATGG		59	18812380	18812398	CCGGAGTATCATGAACCAC		59	NA	
Drosophila melanogaster	50	Gr93a	FBgn0041229	FBtr0084133	1	1	1	60	3R	17659483	17659563	AGTGTTGAAACATTTCTCGG		58	17659583	17659604	ATCCCAATACTTTGATCTCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sec15	FBgn0038856	FBtr0084034	2	1	1	71	3R	16932409	16932427	TAAGTGCTACGGTTACACC		59	16932292	16932376	ACCTCATTATAATGATCCCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7715	FBgn0038646	FBtr0083685	3	1	1	99	3R	14554043	14554135	TGAAAGTATTCGCATTGTGC		59	14553963	14553981	CAGCGGATACTGATCTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7708	FBgn0038641	FBtr0083669,FBtr0083668	2	2	2	99	3R	14509015	14509033	TTCTGTCCTATGTTGCAGC		59	14509095	14509244	TAATCTGTCTCGTTCCAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	ARP-like	FBgn0027095	FBtr0083283	2	1	1	80	3R	12175455	12175474	CTACAAACAGATCGAAACGG		58	12175515	12175621	CCGAGGTAGTAACAGAATCTG		59	NA	
Drosophila melanogaster	50	CG14866	FBgn0038315	FBtr0083081	3	1	1	78	3R	11143157	11143231	GTGGATTACCTGGAGAGTC		58	11143273	11143291	CCTCCTTCTGATTGTTTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4334	FBgn0038312	FBtr0083065	1	1	1	115	3R	11095246	11095264	CACTCTGGGTCTCTTTGTC		59	11095341	11095468	GAAACAGAACTATGTCAAGGC		59	NA	
Drosophila melanogaster	50	Oscp	FBgn0016691	FBtr0083064,FBtr0083063	3	2	2	108	3R	11092087	11092168	CTTAAGTCTTTCCTGAAGGG		57	11092239	11092257	TCATGTCGACGTACTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31259	FBgn0051259	FBtr0081871	1	1	1	158	3R	4351253	4351344	TTTCAAGTCGACTACCTGC		59	4351466	4351484	TTGTAGAGCAGATGCATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10999	FBgn0037381	FBtr0078635,FBtr0078634,FBtr0078636	1	3	3	61	3R	1644167	1644185	GCAACCGTTCAACTTACAG		59	1644210	1644228	CTTCTTCACTCCAGTGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2082	FBgn0027608	FBtr0078675,FBtr0078674,FBtr0078672	2	3	5	121	3R	1587428	1587903	CAAGAACAAGTTCATTAGCTGG		59	1586644	1586662	CCACGATCTTCTCCTTGTC		59	NA	
Drosophila melanogaster	50	CG9780	FBgn0037230	FBtr0078959,FBtr0078960	2	2	2	61	3R	119497	119518	CATGGTTCGACTTCTTAATTGG		59	119072	119475	AGTCTGCATCTACGATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32477	FBgn0052477	FBtr0072500	2	1	1	81	3L	227384	227405	CATCTCATCTATAGCTTCTGAG		57	227447	227523	AAGCGTCATTTCTCAAACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Six4	FBgn0027364	FBtr0078274,FBtr0078275	1	2	2	78	3L	20782260	20783242	AAAGACCGGACATCATGTC		59	20782200	20782218	CTTGGAGCATTGAACATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7298	FBgn0036948	FBtr0074859	3	1	1	228	3L	20195799	20196021	ATCAAACTGCATACAACGTG		59	20195590	20195609	CAGTACCCTAAACTGTCGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33710	FBgn0053710	FBtr0091698	1	1	1	111	3L	19945648	19945666	AAGTACAGGATTTACGTGC		57	19945490	19945574	CCCATTGATAACGTAATCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	Mi-2	FBgn0013591	FBtr0074919	1	1	2	112	3L	19903143	19903164	GAGAATGACGATAATTTCCAGG		58	19881562	19881642	TCGTCTTCGTCGTTATTCG		59	NA	
Drosophila melanogaster	50	Cpr76Bc	FBgn0036880	FBtr0113180	1	1	1	151	3L	19516472	19519135	CATTATGAGCATCAGGGCT		59	19519250	19519268	TAGTGAACCGTTCGTATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Msi	FBgn0043025	FBtr0075192,FBtr0110847,FBtr0110846	1	3	3	79	3L	17748786	17748806	TGATCTATGCTCCTTCTAGGA		59	17748668	17748745	ATGCAACTTAAGCAGACGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7656	FBgn0036516	FBtr0075594	1	1	3	165	3L	15579681	15580105	GGGTAAGGACAATGAGTATCC		59	15579536	15579554	ATCGTAGAAGTTGGCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32044	FBgn0052044	FBtr0076407	3	1	1	219	3L	9746517	9747045	CGTTCGAACTGAAGAAGGA		59	9746316	9746337	GCAATGTATTCATTACTCCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS9	FBgn0010408	FBtr0076423,FBtr0076424	3	2	3	164	3L	9504210	9504228	CTGGCTAAGATCCGTAAGG		59	9503660	9503678	GTCCTCAATCTTCAGACCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	pix	FBgn0086706	FBtr0076558,FBtr0076557	2	2	2	82	3L	8966608	8966629	CTCGTATTTGGATGTTAAGCAG		59	8966488	8966568	CCACAATAATAAACTTGGTGGG		59	NA	
Drosophila melanogaster	50	Cdc6	FBgn0035918	FBtr0076647	2	1	1	61	3L	8625390	8625486	AAGCAAGACACTCTAAAGC		57	8625347	8625365	TAGACCTTGTTCAGCACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17744	FBgn0035730	FBtr0076932	1	1	1	60	3L	7019530	7019618	AGCCTTCACAGATATGAATGG		59	7019490	7019508	CGGTAGTCCCTTTAAAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10147	FBgn0035702	FBtr0076987	2	1	1	131	3L	6480892	6480970	AAGAAAGCTTTGGAAGAGC		58	6480779	6480797	CTCAGTGCAATGATACAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6592	FBgn0035669	FBtr0077044	3	1	1	85	3L	6053711	6053729	TCTACCCTACCTGGAATCC		59	6053778	6053854	GATGCGCTCATTAAAGCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG1079	FBgn0026592	FBtr0073157	2	1	1	80	3L	3894050	3894068	TACGCACCATGAATAAGCT		59	3894112	3894184	GGAAACGATAGGGTATGGC		59	NA	
Drosophila melanogaster	50	CG12018	FBgn0027903	FBtr0072775	3	1	1	60	3L	1776016	1776034	TGTTCTGGAGGATGAACTG		58	1776057	1776076	TAAGAGCTGTCCATTTAGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7995	FBgn0035266	FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767	2	5	5	157	3L	1743701	1743719	CATCTCCACGTACTTCTCG		59	1743909	1743927	TTACATCCGTGATGTGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	metl	FBgn0035247	FBtr0072813,FBtr0072814	1	2	2	97	3L	1638854	1639059	CTTCAAGCACAATGCTTGG		59	1638775	1638793	CTTCCATCTTTGAGGTCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32335	FBgn0063667	FBtr0072636	3	1	1	232	3L	1202785	1202887	AAAGAGTCATACAGGGTGC		59	1202571	1202589	AAAGATCTTTCCTGCTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34453	FBgn0085482	FBtr0112759	3	1	1	95	3L	232916	232934	TGAGTCCAGATTACAAGCA		58	232782	232858	CAATGGTAGAGCTTGAAGTG		58	NA	
Drosophila melanogaster	50	Lsp1gamma	FBgn0002564	FBtr0072463	3	1	1	60	3L	66671	66689	GAATGGATTAAGATGGGCC		57	66711	66796	AATCGAAGGTCTCGTATTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4612	FBgn0035016	FBtr0072346	2	1	1	225	2R	20412375	20412396	GCACTTCAAGAATCTGTATGTG		59	20411940	20411959	GTACAAGAACTTGTTGTCGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9850	FBgn0034903	FBtr0100330,FBtr0100329	2	2	2	80	2R	19654955	19655679	GATAATCTGCAGGTCAAACG		58	19654894	19654912	TCTGGGACCCTTTAGTAGG		59	NA	
Drosophila melanogaster	50	CG30417	FBgn0050417	FBtr0072041	1	1	1	60	2R	19214916	19214935	GATTACCATGAGATTGTCCG		58	19214875	19214893	TATTCAAACGATGCCTCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32834	FBgn0052834	FBtr0071991	2	1	1	67	2R	18871011	18871029	AAGATGAGGATACAACCGC		59	18870864	18870980	GTACTGGGTACGGTAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11170	FBgn0034705	FBtr0071786	2	1	1	60	2R	18065564	18065582	TGTTTCGTACTTGGAGCAG		59	18065522	18065542	GTACATCATGTAGAACCACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4386	FBgn0034661	FBtr0071743	3	1	1	152	2R	17687668	17687687	CCATCATCAAGTTGGATGAG		58	17687470	17687554	CCTGAAGAGTATCGGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Obp56h	FBgn0034475	FBtr0086335	1	1	1	60	2R	15703089	15703108	TCACCCTATTCTGTATTGCT		58	15703131	15703207	AAGTCCGGATTACACTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cer	FBgn0034443	FBtr0086551	1	1	1	105	2R	15284056	15284135	GTACAAGTCCAAGTTCGAC		58	15283969	15283987	GAACTTCCGATTGTGTTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpS28	FBgn0034361	FBtr0086714	1	1	1	228	2R	14502098	14502177	TAATTGATCTGGACAACGC		57	14501831	14501852	GCCTCTAGAATGGTAATATCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5174	FBgn0034345	FBtr0086688,FBtr0086684,FBtr0086689,FBtr0086687,FBtr0086686	1	5	7	275	2R	14309058	14311650	CATAATACAGCCAACCTGTC		58	14311962	14311980	CTTGAGGTTCTTAAGGCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18537	FBgn0034323	FBtr0086759	3	1	1	64	2R	14183669	14183690	GTGGAAAGTTTGGAATATCAGC		59	14183715	14183796	CACCATTGTCTCCTCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15609	FBgn0034180	FBtr0114626,FBtr0114629,FBtr0087019,FBtr0114627,FBtr0114628,FBtr0114625	1	6	6	90	2R	12899519	12899537	TAAGGTTACCAACCTGACG		58	12899312	12899465	AGACATGTCAATGAGCTCC		59	NA	
Drosophila melanogaster	50	Vkor	FBgn0053544	FBtr0091510	2	1	1	62	2R	12666129	12666147	CAAGTAAATGCTCCCAACG		59	12666172	12666246	AGAGCTCAAGAAGTACAGGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10151	FBgn0033960	FBtr0087471,FBtr0087472,FBtr0087473	1	3	3	69	2R	10641377	10641492	GCAATGAGAATCCTTCTTCG		58	10641327	10641345	AACGATTGTGTTGGATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16728	FBgn0033539	FBtr0088258	1	1	1	81	2R	6529715	6529795	TTTATGCCAATTTGCCACC		59	6529652	6529670	TGGATGAGAATGTTCTGGC		59	NA	Nonspecific
Drosophila melanogaster	50	CG3107	FBgn0033005	FBtr0086078,FBtr0086077,FBtr0111280	3	3	3	140	2R	979965	980034	TTAGATGCCGTATTCAGACC		59	980137	980155	AAACGCACCTTTCATTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR9337	FBgn0032898	FBtr0081448	3	1	1	130	2L	20863229	20863247	TACATCAACCCGATTAAGC		57	20862939	20863011	GGTTTGCTGTACTCATAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Hr39	FBgn0010229	FBtr0081481,FBtr0081480,FBtr0081479,FBtr0081478	1	4	4	104	2L	21255223	21255241	TAGTTTGGCAGGAACTTCG		59	21255309	21255551	ACATCCATGATTTCCTGCA		59	NA	
Drosophila melanogaster	50	sNPF	FBgn0032840	FBtr0081327,FBtr0081326	2	2	2	95	2L	20054735	20054896	AAATTGAACGATCGCAATGG		59	20054954	20054972	TCTCCGGAATTTCGTACTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10194	FBgn0032790	FBtr0081285	3	1	1	117	2L	19489642	19489722	TAAGAAATCGCTGGATCCA		58	19489543	19489561	ATAATCGCTAGTGGAGGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10859	FBgn0032520	FBtr0080522	1	1	1	121	2L	13396959	13396977	GAACAATGCTAACCGTGAG		58	13396792	13396875	TATCTCCCGTTCAAACATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6583	FBgn0032420	FBtr0080358	2	1	1	232	2L	12171920	12172130	GAGAGGATTCATCTGGGAC		58	12171706	12171725	TAAATATTCTGGAGGCAACG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG31755	FBgn0051755	FBtr0079972	1	1	1	74	2L	9999032	9999116	AAATCAGAGCCCTAATCGG		59	9998976	9998994	TGAATGTTTCTCACTGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7795	FBgn0032019	FBtr0079611,FBtr0079610	3	2	2	97	2L	8319141	8319159	TAAGACCAGTTGCGATGTG		59	8318946	8319082	CTTCAGGAACAACACTTTCTG		59	NA	
Drosophila melanogaster	50	baf	FBgn0031977	FBtr0079535	2	1	1	77	2L	8029724	8029824	ATTCGATATGGCCTACACC		58	8029864	8029883	TTCATCCAGTCCTTGAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7154	FBgn0031947	FBtr0079488	1	1	1	134	2L	7785623	7785701	CTATGGGCATGTCCTATGC		59	7785799	7785817	CATCAGACTCGTCGATCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3347	FBgn0031513	FBtr0077579	2	1	1	62	2L	3270778	3270935	GACACGTTGGTTTATTGGT		58	3270959	3270979	GACTACGATATCTCGATTTCC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG10880	FBgn0031398	FBtr0077843	1	1	1	102	2L	2215597	2215615	AGATCACCGAAGAGATTGC		59	2215458	2215531	TTCTTCTTGTGACTCTCGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2807	FBgn0031266	FBtr0078068	2	1	1	139	2L	568422	568607	GAACACATGAAGATATCGAGG		58	568708	568726	ATCATCGTCGTACAAGTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR31167	FBgn0051167	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Psi28S-612	FBgn0082953	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CR40677	FBgn0085765	FBtr0114215	1	1	1	60	XHet	184756	184775	CAGCACTAAGTCACTTTGTC		58	184796	184816	ATATTGACGCTCCATACACTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	bves	FBgn0031150	FBtr0077247,FBtr0077246	3	2	2	122	X	20946709	20946806	TGACTACTTTCAGGTCTCCA		59	20946891	20946909	AGAATGTGATCGAAGACGG		59	NA	
Drosophila melanogaster	50	Fur2	FBgn0004598	FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263	1	7	7	80	X	16273085	16273103	TTTGGTTATGCATGAGCAC		58	16273145	16273233	CAGAAGGCACATTTGTTATCC		59	NA	
Drosophila melanogaster	50	CG1764	FBgn0030467	FBtr0073796	2	1	1	60	X	13189572	13189591	CCTATCCCGAATATCCAGTG		59	13189387	13189405	TAGTACTTCAGCCTCTTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CkIIbeta	FBgn0000259	FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559	3	5	6	164	X	11689031	11689146	TTTGTTCCAAGGCTATATGG		57	11689687	11689705	TTGTATTCGTGCGTATGTG		58	NA	InUTR
Drosophila melanogaster	50	CkIIbeta	FBgn0000259	FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559	2	5	6	163	X	11689032	11689147	TTGTTCCAAGGCTATATGGA		58	11689687	11689705	TTGTATTCGTGCGTATGTG		58	NA	InUTR
Drosophila melanogaster	50	CG18624	FBgn0029971	FBtr0071140,FBtr0071141	3	2	2	126	X	7787312	7787330	GTCTTGGGACTGGATAAGC		59	7787204	7787222	CGTATAGGGCACTCTTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	trr	FBgn0023518	FBtr0070362,FBtr0070363	2	2	2	83	X	1776708	1776783	CTTGGCGAGATCTAAGATCC		59	1776644	1776665	CCAATGTACTCGATTATCATGG		58	NA	
Drosophila melanogaster	50	CG3638	FBgn0026875	FBtr0070248,FBtr0070246,FBtr0070249,FBtr0070247	3	4	4	88	X	1117713	1117731	TTATTTGGCCTCCAGTGTG		59	1117575	1117661	CATAGGGACTTCTCATGCC		59	NA	
Drosophila melanogaster	50	Dredd	FBgn0020381	FBtr0114561,FBtr0114560,FBtr0114559	2	3	3	81	X	528200	528221	GAAGTTGCTAATCATACAAGCC		59	528072	528160	GGTCACGTCTATCCTAAAGAG		59	NA	
Drosophila melanogaster	50	CG40196	FBgn0058196	FBtr0113830,FBtr0113829,FBtr0113831	3	3	3	121	U	1092306	1092325	CAGATCTAAGTTGCGATCCT		59	1092151	1092224	GTAAAGAGAATTCACTGCTCG		59	NA	
Drosophila melanogaster	50	CG11120	FBgn0039250	FBtr0084716	1	1	2	83	3R	20749876	20749895	TTTCAGAGTCCTATTGAGGT		57	20749941	20750011	CCGGTTATTGACATTGGTC		58	NA	
Drosophila melanogaster	50	tin	FBgn0004110	FBtr0084086	2	1	1	289	3R	17206635	17206654	CATCTACGGTTCAGATGAGG		59	17207331	17207352	GATTCTGGAACCAAATCTTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	rdx	FBgn0086364	FBtr0082872,FBtr0082871,FBtr0082874,FBtr0100852,FBtr0100361	3	5	5	91	3R	9796061	9796080	TAAATCAGAAGTCAGAGCCA		58	9795916	9796007	AACGATAAGCTCTTTGGGA		58	NA	
Drosophila melanogaster	50	mfas	FBgn0024211	FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499	2	15	15	121	3R	7812116	7812134	CTAGAGGATGACAAGCCAG		59	7811941	7812031	TTCTTCAGGATGTTGGAGG		58	NA	
Drosophila melanogaster	50	CG14683	FBgn0037822	FBtr0100412,FBtr0082267	3	2	2	60	3R	6523607	6523627	CCTAAACCCTACTAGACTGAG		58	6523648	6523667	AGTCGTCACATCTATAGAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8866	FBgn0037679	FBtr0082056,FBtr0082055	3	2	2	87	3R	5158584	5158666	GCTATAAACAGCTATATGCCC		58	5158517	5158535	TAGAGGTATAGCTCACCCT		57	NA	
Drosophila melanogaster	50	Itp-r83A	FBgn0010051	FBtr0078686	3	1	2	96	3R	1356978	1356998	CTTCTAAGACTTACGAAGACG		57	1357055	1357390	CACCTTCGGAATCAATATCC		58	NA	
Drosophila melanogaster	50	Gel	FBgn0010225	FBtr0078971,FBtr0078968,FBtr0078973,FBtr0078972,FBtr0078969	1	5	5	135	3R	66120	66138	TCAATACGAGCAAGAGGAC		59	66237	66319	AAAGTAAAGCTTTGCCGTG		59	NA	
Drosophila melanogaster	50	CG11489	FBgn0025702	FBtr0078496	3	1	2	95	3L	22274874	22275670	CTGCTACGACTACCATCAC		59	22275729	22275747	TCGGCGGTATAATTGTACG		59	NA	
Drosophila melanogaster	50	CG32206	FBgn0052206	FBtr0089795,FBtr0089796	1	2	2	80	3L	19357771	19357789	TCCGACTCATTTGACTTCG		59	19348668	19357728	TAGCACATCATCTGGATTCG		59	NA	
Drosophila melanogaster	50	blot	FBgn0027660	FBtr0075235,FBtr0075233,FBtr0075234,FBtr0075232	2	4	4	129	3L	17391426	17391508	GTTGTAATGCTGTGCACAC		59	17391315	17391333	AGTAGTGACGACTGAAGGA		59	NA	
Drosophila melanogaster	50	CG11905	FBgn0036678	FBtr0075304,FBtr0075301,FBtr0113173	1	3	10	208	3L	16926458	16928309	AATGCGCTTTCTTGTTCTC		59	16923957	16923975	GTTGATAGGCTCCATAGGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Cpr67B	FBgn0035985	FBtr0076455	1	1	1	60	3L	9398614	9398633	CCATCAGTATCATGGTCAGG		59	9398656	9398674	GTTCCAATCCCTATAGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17150	FBgn0035581	FBtr0073349	2	1	3	80	3L	4865995	4866015	CTTATCGATCTACAGGAGGAC		58	4866052	4866138	CCTCTCCATATTAGACGATAAGAG		59	NA	
Drosophila melanogaster	50	ago	FBgn0041171	FBtr0073246,FBtr0073247,FBtr0073245	1	3	3	99	3L	4247723	4247741	AATTGTGGGACGTTAAGAC		57	4247576	4247660	GTGTCGTTTGCTCTAATCC		58	NA	
Drosophila melanogaster	50	CG1244	FBgn0035357	FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933	2	6	6	90	3L	2640506	2640585	TCTGTGGAAGGATGTACCA		59	2640639	2640657	CACTTGTAGGACAGGTGAG		59	NA	
Drosophila melanogaster	50	CG13925	FBgn0035291	FBtr0072838	1	1	1	67	3L	1921630	1921648	TGTAGAAAGCATCGAGGAG		58	1921679	1921697	TATCGGCGACTATTTCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	5SrRNA:CR33358	FBgn0053358	FBtr0086350	1	1	1	62	2R	15651889	15651907	AATACATCGGTTCTCGTCC		59	15651845	15651863	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4324	FBgn0034956	FBtr0072197	2	1	2	117	2R	19904314	19904332	TATCTGAACAACGAGCCAG		59	19904158	19904233	CAGTGTAGGTATCATCCGG		58	NA	
Drosophila melanogaster	50	TBPH	FBgn0025790	FBtr0089627,FBtr0089626,FBtr0089625,FBtr0089624	1	4	4	143	2R	19748031	19748104	CATTATCAAGGGCGTTTCG		59	19747906	19747924	TTCATGTGGTTACCCTGTG		59	NA	
Drosophila melanogaster	50	Vrp1	FBgn0034695	FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104	2	7	7	87	2R	17998431	17998841	CAACCTAAATATCTCGTTAGGC		58	17998365	17998384	TAGACTGCTGTTTAAGGACG		59	NA	
Drosophila melanogaster	50	pAbp	FBgn0003031	FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740	1	8	8	97	2R	14032395	14032483	AGGAAAGAATTCTGAGAAGC		57	14032543	14032561	CAATCATCGGATACAGACG		57	NA	
Drosophila melanogaster	50	CG6550	FBgn0034214	FBtr0086961	1	1	1	60	2R	13314614	13314635	GGATATAGATTGAGTGGAAAGG		57	13314575	13314593	TAACCGTGCAGCTATTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Syn2	FBgn0034135	FBtr0087095,FBtr0087096	1	2	5	118	2R	12442744	12443115	TCCTTCAGAAACAACTACCTC		59	12443195	12443213	GACACCTGTGGAAATTCCA		59	NA	
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087272,FBtr0087270,FBtr0087273,FBtr0087271	3	4	7	90	2R	11848682	11848827	CCAATTCGAGACACATATTCTC		58	11848613	11848631	TGATCCATTGGATTTCGGG		59	NA	
Drosophila melanogaster	50	CG33468	FBgn0053468	FBtr0087503	2	1	1	60	2R	10494193	10494211	TGGTACATGTACTATGCGA		57	10494151	10494169	TACGATGGATCTGATCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mam	FBgn0002643	FBtr0087597,FBtr0087596	2	2	3	60	2R	9943543	9943629	CAATGCAAATGTTCCCTCC		59	9943652	9943671	GTTAAAGTTCATGCTTTGGC		58	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG30048	FBgn0050048	FBtr0100374,FBtr0087919	2	2	2	60	2R	8284127	8284146	CATAAAGGTGCTCGTATGTG		58	8284166	8284187	CTTAACCTCTATCCAAGTTGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ced-6	FBgn0029092	FBtr0088550,FBtr0088548,FBtr0088549	2	3	3	133	2R	5324291	5324933	CTAGTCAAGTTCTTTGGTAACC		58	5324179	5324197	TTCTTGAACTTCTCCTGGG		58	NA	
Drosophila melanogaster	50	pk	FBgn0003090	FBtr0089043,FBtr0089044,FBtr0089042	3	3	3	121	2R	3106568	3106586	GTACTTCTCGCAGATACCC		59	3106671	3107974	AGTGACAGTAACGAACCTC		58	NA	
Drosophila melanogaster	50	crc	FBgn0000370	FBtr0081512	1	1	3	87	2L	21312193	21318132	GACCTGAAAGATGAAGAATGTC		59	21318180	21318198	TAATGTTCGGCTGAAAGCT		59	NA	
Drosophila melanogaster	50	CG31751	FBgn0086909	FBtr0081092	1	1	2	60	2L	18679136	18679154	CGCAACTTCTTTGTCAAGG		59	18682281	18682299	GACAGTGGGTTACAATGAG		57	NA	DesignNoJunction
Drosophila melanogaster	50	cact	FBgn0000250	FBtr0080844,FBtr0080845,FBtr0080847	2	3	4	127	2L	16314551	16314569	CGTGCATCATGAACAAGTC		59	16313442	16314462	ATCGTACATCTTCGTATCGTC		59	NA	
Drosophila melanogaster	50	CG33642	FBgn0053642	FBtr0091619	2	1	1	60	2L	13530470	13530488	GATGAGAAGGATCTACCGC		59	13530512	13530530	AATATTCGGTGACAGTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17768	FBgn0032240	FBtr0100253	1	1	1	60	2L	10403734	10403752	GCGATGTTATTTGCACCTC		59	10403519	10403537	ATATAACATTCGGGCATGC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG31708	FBgn0051708	FBtr0079776,FBtr0079777	3	2	2	117	2L	9055110	9055128	ACCCATATGAAGTTGACCA		58	9053421	9055030	GATATGAAACGTACAGTCGT		57	NA	
Drosophila melanogaster	50	Gr28b	FBgn0045495	FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458	1	5	5	117	2L	7455130	7455212	TTGTATTTCACGATCAGCG		58	7455031	7455049	TATTGAAGGTCTCACAGCA		58	NA	
Drosophila melanogaster	50	CG5171	FBgn0031907	FBtr0114588	2	1	3	71	2L	7402923	7402941	AGATCCATCAGGGATAGGT		58	7402973	7403237	TAGATTTCACTTAAGGTAGCCG		59	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG11327	FBgn0031849	FBtr0079316,FBtr0079315	1	2	2	60	2L	6685613	6685633	GATCCTACAGACGTAGAATCC		59	6685573	6685592	TTTCGAGTTCCTCCATATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mtm	FBgn0025742	FBtr0079223	2	1	1	60	2L	6035375	6035393	GTTCAACAACGCATTTGAG		58	6035333	6035352	GTACAGATGATCCACGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33496	FBgn0053496	FBtr0089609	2	1	1	70	X	20081276	20081388	TGATGGCCATAGTTGAGTG		59	20081224	20081242	ATTCATGGCCTTGTACAGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	inx5	FBgn0030989	FBtr0074698	2	1	1	60	X	19063547	19063860	CTCAATTTCCTCATCAGTGTG		58	19063507	19063525	AGAATCCGTTCAGGAACAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5800	FBgn0030855	FBtr0074453	3	1	1	105	X	17530777	17530871	TTCTCATACCCGTTCTGGA		59	17530940	17530958	AAGATCTGGTAGGCTAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hdm	FBgn0029977	FBtr0071133	3	1	1	107	X	7813103	7813124	CATACATCAGTTTACTGCAGTG		59	7812914	7812933	GGTATATGTTGTTGACAGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	thoc7	FBgn0035110	FBtr0072527,FBtr0072526	1	2	2	80	3L	212492	212512	GAGGATCGGAGAATAGTAGTG		58	212367	212450	GTACATGATGGGATTGCTG		58	NA	
Drosophila melanogaster	50	CG13502	FBgn0034692	FBtr0071799,FBtr0113103	3	2	2	64	2R	17974262	17974281	GAGATCAAGAATGCCAATCC		58	17974055	17974235	CTATTCAGCTCAAGAGCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30461	FBgn0050461	FBtr0100250,FBtr0100252	2	2	4	88	2R	12884216	12884501	AATGCTACAACACGATCCT		58	12884146	12884164	TTCGGTTTACTAATCGGCC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12129	FBgn0033475	FBtr0088395	3	1	1	150	2R	5921048	5921118	AAGAGCCGGATCTTTATGG		59	5921285	5921303	TTCGTAGATCCTTTCATGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Pka-R2	FBgn0022382	FBtr0088438,FBtr0112902,FBtr0112901,FBtr0088437,FBtr0088439	2	5	5	71	2R	5886301	5886941	TGTTATTGAATCTGGCGTC		57	5886248	5886266	AGTCCAGTGTGATTGTAGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	rho-6	FBgn0032415	FBtr0080359,FBtr0080360	3	2	2	237	2L	12131047	12131293	AGTGCTTTATAGGTATCTGCC		59	12130762	12130780	AACAATATCAGCAGGGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG15628	FBgn0031632	FBtr0077384	1	1	1	73	2L	4825640	4825658	CGTTTGGTGCATGAATCAG		59	4825695	4826448	AACTTTAACGATTCCGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	mir-315	FBgn0067689	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-8	FBgn0046815	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:G3:56EFa	FBgn0011869	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG12576	FBgn0031190	FBtr0077365	1	1	2	69	X	21882351	21882369	TCACAGTCGTCCTAATGTC		58	21879272	21879290	ATCCAGTAGCCAAGTAGTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34019	FBgn0054019	FBtr0100074	1	1	1	89	X	21296891	21296909	ATTTCTCCACCTTTCTCCT		57	21296672	21296838	AATCATTTCACGTGAGGAG		57	NA	
Drosophila melanogaster	50	shakB	FBgn0085387	FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572	3	5	5	82	X	20644231	20644250	AACGCTAATATACAGGGTGG		59	20643790	20644186	GACGCACTAACCTAAATCG		58	NA	
Drosophila melanogaster	50	sw	FBgn0003654	FBtr0089406,FBtr0089407	2	2	13	96	X	20105884	20105902	TGGTCTACACAAAGCAGAC		59	20104508	20105410	GTAGCATGAGCTTTACGTG		58	NA	
Drosophila melanogaster	50	gfA	FBgn0086778	FBtr0074679,FBtr0074680	3	2	3	104	X	19235952	19235970	TTTCAATCTGATTGTGCCG		58	19234610	19235884	AGAATTGTAACTCCAAGCG		57	NA	
Drosophila melanogaster	50	CG34422	FBgn0085451	FBtr0112722,FBtr0112723	3	2	2	78	X	18739501	18739520	GATCTGTATCGTCTGTTCCG		59	18739561	18739579	TGAGCTTCCACTGATTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32551	FBgn0052551	FBtr0074564	1	1	1	66	X	18333923	18333941	AAGTTCGGAGTATGGTGAC		58	18333971	18333989	GATGTTCGATGCTTGTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5703	FBgn0030853	FBtr0074452	1	1	1	87	X	17527063	17527081	GAAGTTCACCATCTCGGAG		59	17527129	17527304	CAGATCCTCATAGTAGTCATCG		59	NA	
Drosophila melanogaster	50	f	FBgn0000630	FBtr0110991	2	1	6	117	X	17157004	17162564	GATATTTGCTACTTCTCCACG		58	17162643	17162661	TGTGGATGTCATTGTTGGA		59	NA	
Drosophila melanogaster	50	CG32564	FBgn0052564	FBtr0074390	2	1	1	79	X	17100859	17100877	ATCAAGGTCATCAAGGTGG		59	17100920	17100938	TATCCTCCATAGTTGCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mthl1	FBgn0030766	FBtr0074314	2	1	1	62	X	16536973	16536992	GATCTTCGCCTACTTCTACG		59	16537017	16537035	ACGAAGAGCGCTATATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Stim	FBgn0045073	FBtr0074161	2	1	3	132	X	15831777	15833077	GAGCATAAGTTCCATGGGA		59	15831663	15831681	ATCATCTAGCTGACGATGC		59	NA	
Drosophila melanogaster	50	CG8565	FBgn0030697	FBtr0074103	1	1	1	104	X	15734054	15734324	CATATACGACTGGAACCGG		59	15734391	15734410	CTATCTTCACCCGTACATCG		59	NA	
Drosophila melanogaster	50	sd	FBgn0003345	FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825	3	7	7	83	X	15717700	15717788	GATCCATTGCTTGAGACTG		58	15717832	15717853	TTCGTAGAGATCTTTAAGTCCC		59	NA	
Drosophila melanogaster	50	CG15643	FBgn0030654	FBtr0074072	3	1	1	61	X	15465268	15465286	GCATTGGATACTACAGCTG		57	15465225	15465243	CTCATAAACACCGCAACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dob	FBgn0030607	FBtr0073961	1	1	1	60	X	14961554	14961574	GACTTCATATTTCCCTTACCC		57	14961596	14961614	CTGAACTCCGACATTACCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18313	FBgn0030566	FBtr0073915	2	1	1	78	X	14274607	14274625	GCAAGCATAAGAGAATCCC		58	14274667	14274685	TTTAACGGTATCTTGGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ben	FBgn0000173	FBtr0073855	3	1	1	61	X	13892369	13892387	CGGAGGACTATCCAATGTC		59	13892411	13892430	GTTCGGATGGTAGATCTTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32645	FBgn0052645	FBtr0073725	1	1	1	60	X	13044431	13044451	GACAAGGAGTTCAACATTTGG		59	13044473	13044996	TGCTAGATACCACGATCAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG32650	FBgn0052650	FBtr0073698	2	1	1	60	X	12791988	12792008	GAGGCCTACAAGAAGATACTC		59	12791948	12791966	GCTTGATCTCTGCATACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3812	FBgn0030421	FBtr0073689,FBtr0073688	3	2	2	234	X	12663817	12663835	CATCATTGTGGCCAATCAC		59	12664123	12664141	CCACAGTTTGATACGTTGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	ade5	FBgn0020513	FBtr0073705	2	1	1	60	X	12652967	12652985	CCAAGTTCGAGCTAAATGG		58	12652857	12652875	GTTCTACGCATAATGTCCA		57	NA	DesignNoJunction
Drosophila melanogaster	50	Karl	FBgn0030334	FBtr0073556,FBtr0073557	3	2	2	86	X	11684951	11684969	TATTACGCATCCACAGAGG		58	11685017	11685102	CATCGTTATATGCTGATCCTC		58	NA	
Drosophila melanogaster	50	Vago	FBgn0030262	FBtr0073427,FBtr0100644	3	2	2	60	X	10983568	10983589	TACAATCAGCAGTACTGTATGG		59	10983607	10983628	AGACTTCACCGATATAAAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vago	FBgn0030262	FBtr0073427,FBtr0100644	1	2	2	60	X	10983570	10983590	CAATCAGCAGTACTGTATGGA		59	10983609	10983630	GAAGACTTCACCGATATAAAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Imp	FBgn0030235	FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417	3	8	9	95	X	10692567	10692660	GAATAAGGGTGAAATTTGCC		57	10692491	10692509	TGCATGATCCGTTTAATGG		58	NA	
Drosophila melanogaster	50	CG2111	FBgn0030223	FBtr0071492	2	1	1	239	X	10554376	10554449	CATACGCAATTATTGCAGC		57	10554652	10554670	AGGATTATGTCCCGAATGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG1791	FBgn0030163	FBtr0112968,FBtr0071429	1	2	2	141	X	9857866	9857884	GTGATTCGCTACGTTACCA		59	9857683	9857762	GTACCAAACAAGTTGCTCTC		59	NA	
Drosophila melanogaster	50	t	FBgn0086367	FBtr0071335	2	1	1	147	X	9112809	9112828	CCATCAATTTCACCTTCCTG		58	9112554	9112632	CGATCGAATTGATTGACATGG		59	NA	
Drosophila melanogaster	50	CG12661	FBgn0030071	FBtr0071265	3	1	1	61	X	8817389	8817408	GAGAATCGCCTAGAGAAGTG		59	8817347	8817366	TCCAAGCTATAATCGGATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sdt	FBgn0003349	FBtr0100376	3	1	7	108	X	8103979	8103997	AATAATTCAATGGCAGCGG		58	8104067	8104451	TGACGTCTTCTAGTAACTCTC		58	NA	
Drosophila melanogaster	50	RpS6	FBgn0004922	FBtr0071137,FBtr0071135	3	2	3	270	X	7794950	7794968	TTCTACGAGAAGCGTATGG		58	7794185	7794203	CCTTCTTCAAGACGACCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hira	FBgn0022786	FBtr0071070	2	1	1	97	X	7618216	7618234	AGCATGCGACTAATTTCCA		59	7618295	7618457	CTGTTGTCCGGACTAAAGG		59	NA	
Drosophila melanogaster	50	CG4607	FBgn0029932	FBtr0071014,FBtr0071013	1	2	2	60	X	6964930	6964949	AAATCCCTCAGATACTTCCG		58	6965440	6965458	CGAATTCCGGTACGTAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33692	FBgn0064121	FBtr0091675	1	1	3	165	X	6766947	6771957	AACCACATGTCACTAGCTG		59	6772086	6772104	CATTACCCGAATTCGAGGA		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Pink1	FBgn0029891	FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956	1	8	8	166	X	6579447	6579465	ACAACGTCTTCCACTACAG		59	6579594	6579676	TGGAGAAGTCACATTGAAGG		59	NA	
Drosophila melanogaster	50	CG15894	FBgn0029864	FBtr0112955	2	1	2	215	X	6215017	6215856	AATGTATTCGAGCAGGTCG		59	6217754	6217772	GTAACTCTGGTGGTCATCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Act5C	FBgn0000042	FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822	1	4	4	111	X	5797605	5797623	AGGATCTGTATGCCAACAC		59	5797698	5797716	TTGATCTTCATGGTCGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL35	FBgn0029785	FBtr0070800,FBtr0070801	3	2	2	113	X	5567096	5567114	GCTCAAGAATGAGTTGCTC		58	5567273	5567291	ATCACAATGTAGACGCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4119	FBgn0028474	FBtr0070799	2	1	1	97	X	5560824	5561254	GAATTTGACGGACCTATTGC		59	5561314	5561332	TTCTTGGCATCTACCTTGG		59	NA	
Drosophila melanogaster	50	CG6789	FBgn0029745	FBtr0070741	2	1	1	60	X	5026562	5026582	CCGATGCAAATACAGATACAG		58	5026603	5026622	AATGTCTGTATACCCGACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ptp4E	FBgn0004368	FBtr0070725,FBtr0070724	1	2	2	81	X	4844919	4845001	GCAGTTGGAGGATTTAAGC		58	4845046	4845064	AACCTCGAAACGATACTGG		59	NA	
Drosophila melanogaster	50	CG6986	FBgn0029723	FBtr0100551,FBtr0100552,FBtr0070714,FBtr0070713	2	4	4	92	X	4619145	4619163	CCAGCACTATGACTATCCC		58	4619218	4620278	GAGATGTAACCGAAACTGTC		58	NA	
Drosophila melanogaster	50	rb	FBgn0003210	FBtr0070702	2	1	1	180	X	4432738	4432821	GTCCAATCATGACGAACAC		58	4432576	4432594	CACCTTCTCGTTGTATTCG		58	NA	
Drosophila melanogaster	50	fd3F	FBgn0061173	FBtr0070602	3	1	1	93	X	3704128	3704146	GGTCAACTCTATCATCAGC		57	3704284	3704302	GACACTTTCCGTAACAACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG16781	FBgn0029661	FBtr0070530	2	1	1	60	X	3357391	3357412	GAATAAAGTCATCCTGCTAGTG		58	3357352	3357370	CCGGAATAGGATCAATCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ng1	FBgn0002933	FBtr0070523	1	1	1	134	X	3136704	3136722	TGTCACTCACTATAAGCGA		57	3136820	3136838	GGAGTGGATTTCCTATTGG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG3526	FBgn0040355	FBtr0070546,FBtr0113325	2	2	2	60	X	2787337	2787357	CAATAGGATGACCTTCTATCG		57	2787379	2787397	GGAGCAAAGATCATAGTCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	w	FBgn0003996	FBtr0070490	1	1	1	80	X	2685364	2685454	CGATAAATGTGTTCACCTCAG		59	2685304	2685322	GAAAGTATGTGTCACAGCG		58	NA	
Drosophila melanogaster	50	Tsp3A	FBgn0040334	FBtr0070445	3	1	1	216	X	2512911	2512929	CTCAGTAATTCGGGCTACC		59	2512606	2512624	GAACGATTTCTATGCAGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14047	FBgn0040390	FBtr0070465,FBtr0070464	3	2	2	206	X	2262912	2262932	CTTTATAAAGCGTCGCAACTC		59	2262667	2262744	GATGGCTTGTCGTTATCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG14803	FBgn0023513	FBtr0070310	2	1	1	61	X	1763892	1763910	CAAGTCACTCCACTTCCAG		59	1763999	1764018	AATAGAGTTCGTGGTATGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	l(1)G0431	FBgn0028274	FBtr0070297	3	1	1	90	X	1356601	1356687	CTTATGGATACAATCGCGGT		59	1356530	1356550	CCATTGACGTAGTCTTTAAGC		59	NA	
Drosophila melanogaster	50	CG3713	FBgn0040343	FBtr0070195	1	1	1	62	X	740979	740997	TGACCTTTGAACTCATCCG		59	740935	740953	CTTCGAAGCTATCATCGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3156	FBgn0023536	FBtr0070079	3	1	1	109	X	384246	384338	CAGGGCTCTAATTAAGAACC		57	384408	384428	CCTGGATAAGATTGTCTAAGG		57	NA	
Drosophila melanogaster	50	CG41568	FBgn0085697	FBtr0114146	1	1	1	60	U	5846132	5846153	GGCATACGAAGATAATTACCTG		58	5846255	5846274	TTCACACTCGTCGTAAAGAG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG41566	FBgn0085696	FBtr0114145	3	1	1	85	U	5810696	5810715	TGGTCTCTGATAGTGAAGAG		57	5810762	5810781	TTATTAGAGGCATAGGCTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41559	FBgn0085690	FBtr0114139	1	1	1	70	U	4512680	4512698	TGTTAAGAACCCACTCGAG		58	4512628	4512646	AGAACTTGTCATCAACCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41429	FBgn0085648	FBtr0114092	3	1	1	64	U	2235770	2235790	CACTTAGGTAGGTTTGAAAGC		58	2235726	2235744	TTCTTCACCAGCTGTTCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41492	FBgn0085653	FBtr0114097	3	1	1	60	U	1628547	1628568	CCCAGTAGTTACTTTACAACAG		58	1628588	1628607	TGCTAGTTTAAAGACACCGT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41041	FBgn0069966	FBtr0114295	3	1	1	72	U	403048	403066	GTATGGGACAACTCTTCCA		58	402994	403012	CTTCTGTTAACTCAGGGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mitf	FBgn0067895	FBtr0100347,FBtr0100348	2	2	2	80	4	1224348	1224367	CTCGTTACAGTCTACCTCAG		58	1224410	1225001	TCGAATGATGGTAGCTCAG		58	NA	
Drosophila melanogaster	50	sv	FBgn0005561	FBtr0089328	3	1	7	198	4	1128890	1128908	CGTCTATGCTTTACGACAG		58	1131505	1131923	TAGGACGAATTTATCAAGCC		57	NA	
Drosophila melanogaster	50	Crk	FBgn0024811	FBtr0089114	3	1	3	170	4	231301	232282	TGATCAAATCGTTTACCGC		58	232416	232493	AAATCATCTTGATCGCTGC		58	NA	DesignRelaxed
Drosophila melanogaster	50	snoRNA:Psi28S-2562	FBgn0082986	FBtr0113585	3	1	1	107	3R	16648655	16648673	ATCTGATATCGTGGTTGGG		58	16648743	16648762	CAAAGTGTGAGGAAATACCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ferrochelatase	FBgn0024891	FBtr0085849,FBtr0085851	3	2	3	97	3R	27636789	27636807	GTCAGACGAATCCCTACAG		59	27636651	27636730	CTTAACATAGCCCTTAATGGC		58	NA	
Drosophila melanogaster	50	CG2218	FBgn0039767	FBtr0085627	3	1	1	87	3R	26253065	26253084	TGAGGAAAGTTCAGATGTGG		59	26252997	26253015	CTTATCTCGCTCCAGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634	1	4	5	103	3R	26212311	26213196	AGATTTCAAGTGCTCCCTG		59	26212226	26212244	TGATCTCCTCCTGGATCTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG15526	FBgn0039744	FBtr0085562	2	1	1	67	3R	25882149	25882168	ATATCCATTGAGCTCATCGG		59	25882197	25882216	TTGGATGTTTCCAAGATCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alph	FBgn0086361	FBtr0085446,FBtr0085442,FBtr0085445	3	3	5	167	3R	25422971	25422990	GAGTCTAGCAAGATAACCGA		58	25423191	25423900	CTAATGCGTTGGACTTTCAC		59	NA	
Drosophila melanogaster	50	Dr	FBgn0000492	FBtr0085441	3	1	1	68	3R	25390060	25390078	AAGATCTGGTTCCAGAACC		58	25390109	25390128	CTTGATCTTCTCGATCTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2014	FBgn0039669	FBtr0085440	1	1	1	88	3R	25341763	25341781	TGGATGACCTGCTAAACTG		59	25341833	25341851	AATGTGCATCATTTCGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Trc8	FBgn0039668	FBtr0085430,FBtr0085432,FBtr0085429	2	3	4	97	3R	25327494	25327512	TGTCCAACTTTGGACTGTC		59	25327201	25327434	TTGGATTAGTCTGATGGTCC		58	NA	
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0085324	1	1	8	140	3R	24638553	24638691	CAGATAGAGGATGACGCTG		59	24638793	24638813	CAGGGAGTCTACATTGTACTC		59	NA	
Drosophila melanogaster	50	CG4884	FBgn0039565	FBtr0085264	3	1	1	86	3R	23783412	23783430	CGTCAATGGAAAGAAGCTG		59	23783292	23783310	TTCGATTGACTAAAGCCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG34353	FBgn0085382	FBtr0112563	1	1	1	106	3R	23607342	23613061	CAGCCTGAGGTAATTTGGT		59	23607254	23607273	TGCACTTTGCGTATAATCAG		58	NA	
Drosophila melanogaster	50	CG12880	FBgn0046258	FBtr0085217	1	1	1	158	3R	23515703	23515721	TGGACTCAACAAGAAGCTG		59	23516390	23516409	TAGTAGTGCATATTTGGCGG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Mtl	FBgn0039532	FBtr0085191,FBtr0085192,FBtr0085193	3	3	3	140	3R	23464015	23464106	ATCATTCTAGTTGGCACCA		58	23464210	23464228	CTCCATGTATTTCACAGCG		58	NA	Nonspecific
Drosophila melanogaster	50	CG6295	FBgn0039471	FBtr0085077	1	1	1	60	3R	22832476	22832494	ACCTTCTACCTGTACACCA		59	22832434	22832452	CTGACGTAGCCTTGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18472	FBgn0039463	FBtr0085068	3	1	1	120	3R	22774381	22774455	TGCTGAAAGACATCGACTG		59	22774539	22774557	ATTGTAAGCGTGTACTGCA		59	NA	
Drosophila melanogaster	50	ro	FBgn0003267	FBtr0085090,FBtr0085091	2	2	2	146	3R	22703382	22703400	GAGTACATCTCCAGGAGTC		58	22702882	22703273	GACAAAGTTTCTGTAGTGCT		58	NA	
Drosophila melanogaster	50	LpR1	FBgn0066101	FBtr0113480,FBtr0084925	2	2	6	156	3R	21575101	21577791	CTATAAATGAGGCCACTTGC		58	21573920	21573938	TATTCATCCGGTGAACAGG		59	NA	
Drosophila melanogaster	50	CG31120	FBgn0051120	FBtr0089440	2	1	2	80	3R	20740278	20740297	ATTGTCTCTGTCCTGAATCC		59	20740156	20740237	CTCAATGTAAGTCTTCACAGC		58	NA	
Drosophila melanogaster	50	CG13636	FBgn0039232	FBtr0084701,FBtr0084702	2	2	2	98	3R	20665204	20665345	CAGTGGAGCTAATCTTCAGG		59	20665405	20665424	TAGAAATGCTTTCGCATGTG		59	NA	
Drosophila melanogaster	50	CG31357	FBgn0051357	FBtr0084735	3	1	1	64	3R	20655319	20655337	CATCAATGATGAGCTGAGC		58	20655273	20655291	TAATGCCCTTTAGGTGGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slo	FBgn0003429	FBtr0100631	1	1	17	172	3R	20520805	20520823	CTTCATAGCACAAAGTGCC		59	20525142	20528754	GAGTGATATCACTTGCACG		58	NA	
Drosophila melanogaster	50	CG6356	FBgn0039178	FBtr0084601	3	1	1	81	3R	20112884	20112965	CTGAACTGCTACCTGATGAG		59	20113007	20113027	TGAAGAGAATCTTGTAGACGC		59	NA	
Drosophila melanogaster	50	Rox8	FBgn0005649	FBtr0084592,FBtr0084591,FBtr0084593,FBtr0084594	3	4	4	84	3R	19871216	19871235	ATATTCCAACTACCAGGCAG		59	19870980	19871169	CCAGTTGACCTTGATTTCC		58	NA	
Drosophila melanogaster	50	CG10208	FBgn0039118	FBtr0084461	3	1	1	70	3R	19599016	19599034	TATTTCTGCAAGGCAAGTC		58	19598964	19598982	ACCAGAAGATTCATGTCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	orb	FBgn0004882	FBtr0084385,FBtr0084384,FBtr0100227	3	3	5	167	3R	19094013	19094120	TTCACCTTTAGTCAGCGAC		59	19093864	19093882	TTTGCCAAACTAAGTCCCA		59	NA	
Drosophila melanogaster	50	CG6439	FBgn0038922	FBtr0084190	3	1	1	157	3R	17843782	17843800	GACTTCGAGTGCTACTTCC		59	17843586	17843605	TTCATGTTAAGGGTCTGCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3301	FBgn0038878	FBtr0084101	3	1	2	155	3R	17100302	17101107	GTGACCAAATACCATTGCA		58	17100104	17100123	TCAATCCTCTATTCTCAGCT		57	NA	InUTR
Drosophila melanogaster	50	SNF4Agamma	FBgn0025803	FBtr0110938,FBtr0110939,FBtr0084021,FBtr0084022	3	4	12	131	3R	17027123	17027417	TATATGGTAGCATGCGTCG		59	17027512	17027530	AATACTGATGGTCCGTCTG		58	NA	
Drosophila melanogaster	50	slmb	FBgn0023423	FBtr0084032	2	1	1	83	3R	16946807	16946825	TCAAGGTTTGGGATTTGGT		59	16946682	16946760	CAGTATGTTCCACAAGGGT		59	NA	
Drosophila melanogaster	50	CG6231	FBgn0038720	FBtr0083810,FBtr0083809,FBtr0083807,FBtr0083808	3	4	4	101	3R	15444733	15444815	GTATCGATGCATTACTTTACGC		59	15444653	15444674	CTCACCGATCTCCTTATATGTC		59	NA	
Drosophila melanogaster	50	CG7333	FBgn0038715	FBtr0114553	3	1	1	88	3R	15427578	15427656	GTGAAGTCAGTCATTATAACCC		58	15427704	15427723	AAGGAGAAGAGCTTAAAGGG		59	NA	
Drosophila melanogaster	50	CG31404	FBgn0051404	FBtr0083774	3	1	1	60	3R	15201060	15201078	CTCTTCGCAAAGATAACGC		59	15201018	15201036	TAGGTGAATATACCCGTGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5558	FBgn0038684	FBtr0083748	1	1	2	190	3R	14986898	14987091	CCAAAGAAAGAACACTTGGC		59	14986727	14986745	CAGTAGTTGGACCACTTGG		59	NA	Nonspecific
Drosophila melanogaster	50	CG7718	FBgn0038649	FBtr0083682	2	1	1	60	3R	14570306	14570324	GAGTTTCTACGAGAGCCTG		59	14570264	14570283	GTACTCGAAGAAGTTAACGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083650	1	1	13	101	3R	14303853	14303874	GAAAGATACAGATACTTTGCCC		58	14261500	14303791	GTCAGTGTTGTACCTTGTC		57	NA	InUTR
Drosophila melanogaster	50	CG10864	FBgn0038621	FBtr0083654	1	1	1	60	3R	14236562	14236580	ATTCACCGTGATCTATGCC		59	14236520	14236539	CATGTTGAGGAAGTACAGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7175	FBgn0038584	FBtr0083609	1	1	1	180	3R	14047870	14047940	GTTCGCTAAATTTGCCAGAG		59	14047709	14047727	TTTGCTGCGTAAGTACTCC		59	NA	
Drosophila melanogaster	50	tinc	FBgn0038554	FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769	2	4	4	113	3R	13691908	13692611	CTTCCTAGCAGCTCTTGTC		59	13692688	13692706	TAAGTGCTGTCCAATGGAG		59	NA	
Drosophila melanogaster	50	CG18213	FBgn0038470	FBtr0083429	3	1	1	89	3R	12865224	12865309	ATAACCAGAATACGACCGC		59	12865153	12865171	GCGAGATTATCGTTCCCTC		59	NA	
Drosophila melanogaster	50	Glut3	FBgn0015230	FBtr0083340	3	1	1	60	3R	12615009	12615027	CTCAATATGCTGGATTGCC		58	12615048	12615069	ATCCCAGACATAAGATCAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9597	FBgn0038371	FBtr0083190	1	1	1	60	3R	11664156	11664174	TTTCAGAGGGAACTTCCAG		58	11664114	11664135	CGTCACTAAACTCAATCATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6236	FBgn0038318	FBtr0083121,FBtr0083122	1	2	2	82	3R	11151702	11151721	GCCCAAAGTATTGTAAATGC		57	11151562	11151657	TTTACACGGTGAATCTCCA		58	NA	
Drosophila melanogaster	50	Hsc70-4	FBgn0001219	FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056	1	6	6	61	3R	11071531	11071549	GGTATCCTCAACGTGACTG		59	11071571	11071592	GTAATGGTGATCTTGTTCTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7362	FBgn0038258	FBtr0083015	2	1	1	209	3R	10577777	10577795	TCCTGCGATATTGTACTCG		58	10575272	10577605	AGTACTGAAAGTGTATGCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	mRpL11	FBgn0038234	FBtr0082953	3	1	1	80	3R	10338115	10338193	TTACCATGCAGCAAATGTG		59	10338237	10338255	CCGGATCTATTTCCCTGAC		59	NA	Nonspecific
Drosophila melanogaster	50	140up	FBgn0010340	FBtr0082909	3	1	1	100	3R	9950700	9950719	AATTCACAGTCAACTTTGCC		59	9950557	9950575	GTACACCGACATACAAGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG8790	FBgn0027610	FBtr0082747,FBtr0082748	2	2	2	159	3R	9193735	9193754	AAGAAGTACGTCAATACGGA		58	9193875	9193984	CATTATTGTAGTTGCGTCGT		58	NA	
Drosophila melanogaster	50	CG8790	FBgn0027610	FBtr0082747,FBtr0082748	3	2	2	159	3R	9193736	9193754	AGAAGTACGTCAATACGGA		57	9193877	9193985	GCATTATTGTAGTTGCGTC		57	NA	
Drosophila melanogaster	50	CG31345	FBgn0051345	FBtr0082689	3	1	1	91	3R	8637672	8637691	ATCGATGAAATGTTCTCCAG		57	8637368	8637446	TTATTCATAGGAGGACGCA		57	NA	
Drosophila melanogaster	50	Past1	FBgn0016693	FBtr0082655,FBtr0082654	2	2	2	75	3R	8529481	8529499	CAGATGGCATCTTCAATGG		58	8529601	8529619	TTGATGAGTTCCTGCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6753	FBgn0038070	FBtr0082669	1	1	1	159	3R	8467361	8467379	GAAGGACGGATATGTGCTC		59	8466963	8466981	AAGGAGGTAGGCTAAGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Hsp70Bbb	FBgn0051354	FBtr0082636	2	1	1	201	3R	8329024	8329042	AGAATCTCAAGGATGAGCG		59	8329206	8329225	AGATCCTTCTTGTACTTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Scgbeta	FBgn0038042	FBtr0082596	2	1	1	128	3R	8247116	8247134	AGTACAAGATTTGCGTGTG		58	8247006	8247024	CTTAGTTGATCTCGCAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cyp9f2	FBgn0038037	FBtr0082599,FBtr0082598	2	2	2	89	3R	8229402	8229420	AGCCATTCACATACTTCCC		59	8229274	8229293	AGTAGATAACAGCCTTTGCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG3532	FBgn0037979	FBtr0113224	1	1	1	90	3R	7840084	7840102	GTTCCCGTGCTAAATACCA		59	7840154	7840237	CATCTGCAGAAACTTTCTGTC		59	NA	
Drosophila melanogaster	50	mus309	FBgn0002906	FBtr0082434	2	1	1	102	3R	7564855	7564937	CTTCCCTAGATATCTGTGCA		58	7564772	7564790	AATTTGACCATAGGTGGCT		58	NA	
Drosophila melanogaster	50	PGRP-LB	FBgn0037906	FBtr0082398,FBtr0082396,FBtr0082397	3	3	3	202	3R	7279014	7279184	AGATTGGAGAACCGAACTG		59	7278830	7278848	CTTCGGTGTCGTTTATGTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG6723	FBgn0037895	FBtr0082405	3	1	1	102	3R	7243953	7243971	GACCTAAACATCACCTCCA		58	7243697	7243832	GATAGGCCACATTCATAATGG		58	NA	
Drosophila melanogaster	50	CG4683	FBgn0037857	FBtr0082326	2	1	1	80	3R	6776476	6776494	GATCCTGGTAGTGTATCCA		57	6776538	6776610	TGTCATCTTCGATATTGCG		57	NA	
Drosophila melanogaster	50	CG11870	FBgn0037804	FBtr0090031,FBtr0090030,FBtr0090033,FBtr0090032	2	4	4	95	3R	6117481	6117566	CCACATCTACGAAGTATTTGAG		58	6117620	6117640	TTCCTTTCAGACAGATAGTCG		59	NA	
Drosophila melanogaster	50	CG34107	FBgn0083943	FBtr0110787	1	1	1	60	3R	6050977	6050996	CAATGCCTATACCATACCCA		58	6051017	6051037	GACTTCATTGGAGAAACTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Invadolysin	FBgn0086359	FBtr0082181	2	1	1	81	3R	5983496	5983577	CAGAGAATAATCCCAGGCC		59	5983622	5983640	GATTCGCTGTGATCAAAGC		59	NA	
Drosophila melanogaster	50	CG6241	FBgn0037792	FBtr0082185	2	1	1	122	3R	5969281	5969302	GCATCATCTACAACCATAAGAC		58	5968647	5969199	CTAGATTGCGCTTAGTTCTG		58	NA	
Drosophila melanogaster	50	Fst	FBgn0037724	FBtr0082101	1	1	1	62	3R	5471123	5471141	GAAGAATCCACCACAGAGG		59	5471079	5471097	ACTTGTGGATTCTACAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ps	FBgn0026188	FBtr0082038,FBtr0111031,FBtr0111029,FBtr0111030,FBtr0082037,FBtr0111028,FBtr0111027	2	7	9	133	3R	5269786	5270772	CATATTCATCATGGCGAGAC		58	5270868	5270886	GACATCTTGACCCTAGCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG8007	FBgn0037600	FBtr0081877	3	1	2	139	3R	4448126	4448213	CCGATTCCAGCATAAAGGA		59	4448316	4448334	AAATTCGGATTTGGTGGGT		59	NA	Nonspecific
Drosophila melanogaster	50	CG7352	FBgn0037581	FBtr0081842	1	1	1	60	3R	4173831	4173851	GATATAGCCGAGAATTTGGAG		58	4173870	4173891	CTTCCAATTTGATGTCTAGCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst84Dc	FBgn0004174	FBtr0081587	3	1	2	84	3R	3190327	3190345	TTTGGCTTCTAAAGACCGT		59	3190204	3190222	ACCACAGCAGTAATATCCG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	rn	FBgn0003263	FBtr0081593	3	1	2	151	3R	3121509	3121527	CATGCCAAAGACATAAGCG		59	3118151	3120142	AGAAAGTGACCTTTCTGCA		59	NA	
Drosophila melanogaster	50	CG1988	FBgn0037464	FBtr0081632	2	1	2	107	3R	2888851	2888870	AATAGAAGCCATCAAACGAG		57	2889017	2889036	CACTGTCTCTTTAATTCGCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Osi12	FBgn0037419	FBtr0078602	3	1	1	67	3R	2107168	2107186	AGATGATGGGCATGATTCC		59	2107217	2107235	GATAATCAGTGCCTTGCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31548	FBgn0051548	FBtr0078736	3	1	1	81	3R	1462155	1462173	TACCACCTTACTATGCTGG		58	1462092	1462110	GAATCCCATTGACACTGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12746	FBgn0037341	FBtr0078690,FBtr0078692,FBtr0078689,FBtr0078691	1	4	4	80	3R	1392111	1392200	TTACCTTCTTCAAGTTGGAGAC		59	1392240	1392259	TTGGGTTCTTGTATAGCCAC		59	NA	
Drosophila melanogaster	50	CG31538	FBgn0051538	FBtr0078819	3	1	1	61	3R	1102672	1102690	GGAAGCATCCAAAGAACCT		59	1102629	1102647	GCTACTGGTACTGCTATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	corto	FBgn0010313	FBtr0078844	3	1	1	82	3R	911780	911798	TCTGTGTTACCGAAACGAG		59	911716	911734	TCGTAGTTGGCATAACAGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG31531	FBgn0051531	FBtr0078862,FBtr0078863,FBtr0078864	2	3	3	82	3R	526032	526883	GACAATAACAGTGTTATGAGCG		59	526926	526944	GTTACTCCAGCAGCTACAG		59	NA	
Drosophila melanogaster	50	CG1103	FBgn0037235	FBtr0078909,FBtr0111220	1	2	2	60	3R	164766	164786	TGTATACCTTTGTTCGGACAG		59	164808	164826	GTAGTAAGTAGCCAGAGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cpx	FBgn0041605	FBtr0113342	2	1	15	115	3R	110115	113798	AAGTGCCGTTAAAGATGCT		59	114828	114847	CGTAATCAAACGATTACGCA		59	NA	InUTR
Drosophila melanogaster	50	SPoCk	FBgn0052451	FBtr0078532	1	1	4	154	3L	22768457	22770214	TTCATTGAGGAACAGACGG		59	22770332	22770350	ATCTTGGCACGATACTTGG		59	NA	
Drosophila melanogaster	50	Ten-m	FBgn0004449	FBtr0112842	2	1	2	80	3L	22298859	22300659	GCCAATAATGGAGGTAAGG		57	22298797	22298816	CATCATCAGATCCGATTCAG		57	NA	
Drosophila melanogaster	50	CG14562	FBgn0037142	FBtr0078472	3	1	1	161	3L	21939204	21939899	GGATTTCTCAATACGTTCAAGC		59	21940020	21940039	TAGATCAGACCCGATAGCTC		59	NA	
Drosophila melanogaster	50	CG14563	FBgn0037139	FBtr0078444	3	1	1	69	3L	21835355	21835374	AGCCAATACTACGGTTATCC		58	21835305	21835323	ATATGTTCCCGTATCCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12972	FBgn0037076	FBtr0078403	2	1	1	60	3L	21339141	21339159	ATGAGCGTAACATCCTGAC		59	21339099	21339117	GTCTCGTCATAGTAACGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4786	FBgn0037012	FBtr0078213	2	1	1	81	3L	20522850	20532010	CTACAATCGTGTGCTATGC		58	20522787	20522805	GAAAGTCATTCTCACACGG		58	NA	
Drosophila melanogaster	50	CG6680	FBgn0036968	FBtr0074842,FBtr0074841	3	2	2	166	3L	20311901	20311977	GCTCATTTCTGAACATCACC		59	20312106	20312124	GATCTGGATCACCGAATCC		59	NA	
Drosophila melanogaster	50	polo	FBgn0003124	FBtr0100318,FBtr0074839	3	2	2	142	3L	20305704	20305789	CTGTGCAGCTAAACTTCTC		58	20305894	20305913	GTACAAGTCTTTAGACACGC		58	NA	
Drosophila melanogaster	50	CG14100	FBgn0036889	FBtr0074971	2	1	1	60	3L	19582410	19582428	TTGGAGGTAAGGGAAAGTG		58	19582368	19582386	ACATTCAAGCTATCGATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pip	FBgn0003089	FBtr0075012	2	1	11	61	3L	19306259	19306278	AATATCTGAAGAGCACTGGC		59	19305246	19305264	AGGAGTGTTGTTTAGCTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	GNBP2	FBgn0040322	FBtr0075094,FBtr0075095,FBtr0075096	1	3	4	133	3L	18667368	18667387	CTATAGCATCAAGCCTCCAG		59	18667190	18667272	GTTGGAGCATCAGATAGGG		59	NA	
Drosophila melanogaster	50	tap	FBgn0015550	FBtr0075216	1	1	1	60	3L	17353489	17353507	GCACAACTACATCTTTGCC		59	17353530	17353549	ATCCAGGTTGATTGAACCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14060	FBgn0036683	FBtr0113178	3	1	1	244	3L	16976727	16976745	AGCCTGTATGAATCCTCTC		58	16976952	16978344	TCCCTTACAACAATGAACTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Nc73EF	FBgn0010352	FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269	2	8	8	121	3L	16956903	16956980	GATTCACAAGGGTCTATTGC		58	16957064	16957082	CATGGATTCCCTCCTTCAG		59	NA	
Drosophila melanogaster	50	Rpn12	FBgn0028693	FBtr0075308	3	1	1	60	3L	16576662	16576682	CGCTACAACAAGATCTTTCAG		59	16576701	16576722	TAAAGTAGCTATACACCTCGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Smn	FBgn0036641	FBtr0075395	2	1	1	67	3L	16573668	16573687	ACATGTCCGGCTATTATACG		59	16573620	16573638	TTTCTTTCCGCTAGTGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13056	FBgn0040794	FBtr0075376	3	1	1	61	3L	16326692	16326710	GTTCCGAGGACTACATCAC		59	16326733	16326753	GTGGGATAGTTCAGATAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5161	FBgn0036573	FBtr0075491	2	1	1	60	3L	16124314	16124333	TTAACGAGATGTATGACACG		57	16124273	16124291	GTGTTGATGCGATAGAAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	comm3	FBgn0053209	FBtr0075589	3	1	1	60	3L	15606656	15606677	GCAGATCTCATTCAATAACTCG		59	15606617	15606635	TCTCAGCAGATGATTCCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16979	FBgn0036512	FBtr0075563	3	1	1	60	3L	15569940	15569958	AGCTTCAACATTGAGTCCA		59	15569982	15570000	GGAATCTGTGTTGGATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13463	FBgn0036470	FBtr0075631	3	1	1	60	3L	15048202	15048221	CCATCAATGGTCAGATTGTC		58	15048244	15048262	GAAATCTCGTGGGATTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32133	FBgn0052133	FBtr0075784	2	1	1	82	3L	14015211	14015290	TCATCTGCTAACTGCTTGG		59	14015147	14015165	AAGGATCGGATAAGTGTCG		58	NA	
Drosophila melanogaster	50	CG10083	FBgn0036372	FBtr0075819	1	1	1	92	3L	13478009	13478027	GAATTGATTGGCTCTCGTG		58	13477873	13477956	CGGTTGCGTATTTAGTTTAGAC		59	NA	
Drosophila melanogaster	50	CG11262	FBgn0036329	FBtr0075872	3	1	1	60	3L	12989345	12989365	GATGTACTCAAATATCGGTGG		58	12989387	12989405	AATGATCACATTGGGTGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	GRHRII	FBgn0036278	FBtr0075989	1	1	1	158	3L	12340423	12340441	CTACCTGAGCACCTATGTC		58	12335701	12340301	AAGATGAAGAACTGTGGCA		59	NA	
Drosophila melanogaster	50	Sema-5c	FBgn0028679	FBtr0076052	2	1	1	97	3L	12064288	12064696	GTCCAATAAGCGTTTCCTC		58	12064209	12064227	AATATACAAAGTGGCCAGC		57	NA	
Drosophila melanogaster	50	CG6938	FBgn0036235	FBtr0076047	2	1	1	81	3L	11980649	11980667	CAAACACTTCTGGAGGGAG		59	11980709	11980801	GATCCTTGACAATAAACTGCTC		59	NA	
Drosophila melanogaster	50	CG5946	FBgn0036211	FBtr0076079,FBtr0076078	1	2	4	106	3L	11811263	11811281	AAGGACATTCTACTGCGTG		59	11810404	11811193	CTATACTGCCAACCTTCGT		59	NA	
Drosophila melanogaster	50	Gr68a	FBgn0041231	FBtr0076118	1	1	1	60	3L	11745417	11745436	GCATCAAACAGGATCTTCAG		58	11745458	11745477	AGTGTTGAGTTGTCTATGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32087	FBgn0052087	FBtr0076117	3	1	1	61	3L	11726169	11726187	AATCAAGGCCACCATACAG		59	11726212	11726230	TATCGACTAGACTCTCGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mocs1	FBgn0036122	FBtr0076206,FBtr0076205,FBtr0076204	2	3	3	110	3L	11064199	11064217	ATTTCTCTAACCGAACGCT		58	11064720	11064738	TAGACGAAGGATTTCCTCG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Aps	FBgn0036111	FBtr0076250,FBtr0076251,FBtr0076252	2	3	3	81	3L	10889924	10889943	ACGACAAGGATGGATTTAGG		59	10889708	10889881	GAGGTTACCAAGAGTACCTC		58	NA	
Drosophila melanogaster	50	CG32066	FBgn0052066	FBtr0076278,FBtr0076277	2	2	2	187	3L	10640104	10640122	CTACGAGCATTCCATGGAG		59	10634867	10634885	AATCATTCTGTATGGCGGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	dpr10	FBgn0052057	FBtr0076310,FBtr0076308,FBtr0076309	2	3	3	83	3L	10143594	10144087	CATCAGGATAAGGTGCTCAG		59	10143530	10143548	AATGGATTTGGTCTCCTCC		58	NA	
Drosophila melanogaster	50	CG6685	FBgn0036062	FBtr0076355	1	1	1	86	3L	9960873	9960944	ATTGACTTGAATGAGGCCT		58	9960805	9960823	AAATTCTTTGGTCGCATCG		59	NA	
Drosophila melanogaster	50	CG33205	FBgn0053205	FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385	2	8	8	112	3L	9825956	9826035	GAGTTAACCGGGACTACAC		59	9826111	9826129	TCTTTCCCAAACTTAGCCG		59	NA	InUTR
Drosophila melanogaster	50	CG12525	FBgn0036010	FBtr0076422	1	1	1	60	3L	9536087	9536106	ATGATTTCGGGAATTATGGG		57	9536046	9536065	TCGAACTGATTGTATTCCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF-4E	FBgn0015218	FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487	1	7	7	92	3L	9393610	9393692	AGAACATTCGTCCCATGTG		59	9393536	9393554	TATCCAGATCGGTCTTGGA		59	NA	
Drosophila melanogaster	50	Tequila	FBgn0023479	FBtr0076526,FBtr0076525,FBtr0076528	3	3	4	102	3L	9082959	9082977	GCAAAGATGAGGCTAACTG		58	9083042	9083131	CATTGACCATTAGCCTTGAC		58	NA	
Drosophila melanogaster	50	CG6282	FBgn0035914	FBtr0076636,FBtr0076637	2	2	2	100	3L	8607896	8607972	GTTCTGCAATGATGGACTG		58	8608034	8608054	TGATCACATTGAGGGATATGG		59	NA	
Drosophila melanogaster	50	Gug	FBgn0010825	FBtr0076616,FBtr0076619,FBtr0076617,FBtr0076618	1	4	4	178	3L	8461009	8461027	CATATGCCGGGATATCCAC		59	8461169	8461247	ATATCAATGGGCAATGGCT		59	NA	Nonspecific
Drosophila melanogaster	50	mRpL36	FBgn0042112	FBtr0076735	1	1	1	80	3L	8117978	8117996	CTGGAATCTGTCAGACGTC		59	8117916	8117934	GTCCCTTGACCTTGAATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ank2	FBgn0085445	FBtr0112696,FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112702,FBtr0112698	2	7	10	84	3L	7699008	7699084	TTGAACCAGAGGAGATTGC		59	7698942	7698960	AAGTACTGAGGGAAGTCGT		59	NA	
Drosophila melanogaster	50	CG7492	FBgn0035807	FBtr0076821	1	1	1	205	3L	7646733	7646751	ACTTAGTGAACTGCAGTCG		59	7646486	7646564	AAGAATGTACTTCACCCGT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7506	FBgn0035805	FBtr0076822	2	1	1	60	3L	7634198	7634216	CACAATATCCCTGCTTCTG		57	7634098	7634116	AACGACCACATCATTTGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32379	FBgn0052379	FBtr0076853	1	1	1	60	3L	7389952	7389970	GCTCTTACAGGACTACGAC		59	7389994	7390012	GTACTCATATCCATCCGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dbi	FBgn0010387	FBtr0076915	1	1	2	70	3L	7124976	7124994	ACTGTTTAGTTCTGTGGCA		59	7125768	7126227	GTTGAATTGCTCGGAAACC		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	Trn	FBgn0024921	FBtr0077002,FBtr0077000,FBtr0077001	3	3	3	118	3L	6187880	6187898	TGTCATCAGATGAGGACCA		59	6187977	6188081	CAGCATGTACTCAATAATCTGC		59	NA	
Drosophila melanogaster	50	CG10289	FBgn0035688	FBtr0077019	1	1	1	95	3L	6165386	6165466	TTACCTTCACAGATGAGCC		58	6165309	6165327	CAGTGATCACAGTCTCCTG		59	NA	
Drosophila melanogaster	50	CG10625	FBgn0035612	FBtr0113144,FBtr0077140,FBtr0077139	3	3	7	81	3L	5538118	5538137	TAATTCTCGACATTGACGAC		57	5537032	5538076	CCATACCTATAGGCATTTGTG		58	NA	
Drosophila melanogaster	50	CG4603	FBgn0035593	FBtr0077164	2	1	1	60	3L	5128179	5128199	ACTACTATGGCATTGAGATCG		59	5128220	5128239	CCAAAGCGATTGATAATGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dhc64C	FBgn0010349	FBtr0073359	1	1	2	80	3L	4811597	4811615	CTTCGAGAAGGTTAATCGC		58	4811474	4811554	ATATCAGCGTACTCGATCTG		58	NA	
Drosophila melanogaster	50	CG32236	FBgn0046793	FBtr0073369	2	1	1	60	3L	4666275	4666295	GTATTATCATACCCATGGGAC		57	4666235	4666254	TGGTATAGCTGAGAAGTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32238	FBgn0052238	FBtr0073344	1	1	1	60	3L	4649895	4649916	CACATCAACTACAGTAAACGAC		59	4649935	4649955	GGACAGTATGTTGTCAATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DopEcR	FBgn0035538	FBtr0100185	1	1	3	194	3L	4379583	4379935	AACAATTCTTGCCTGTTGC		59	4371891	4379425	CTAATTGTGCGCATCTGAG		58	NA	Nonspecific, InUTR
Drosophila melanogaster	50	RfC40	FBgn0015287	FBtr0073264	3	1	1	67	3L	4135083	4135101	GAACATATTCCGTGTCTGC		58	4135034	4135052	TCTCACGGATAAAGTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18869	FBgn0042179	FBtr0073204	1	1	1	96	3L	4060960	4060978	AATGTGGAGCAACTAGAGC		59	4061038	4061122	ACTGCATAGCCAAGATGTC		59	NA	
Drosophila melanogaster	50	CG12605	FBgn0035481	FBtr0073166,FBtr0073167	1	2	3	256	3L	3961756	3961774	GAACTCGCGTTCAATTCTC		59	3959843	3959861	AAATCACCTTGCCATCCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	dro5	FBgn0035434	FBtr0073062	3	1	1	92	3L	3316844	3316862	AAGTTCCTGTACCTCTTCC		58	3316918	3316936	TCCTCCGTATCTTCCAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jafrac2	FBgn0040308	FBtr0072982,FBtr0072983	2	2	2	92	3L	3043306	3043327	CGTGGTTAATAAGGAGATTGTG		59	3043380	3043449	ACAAAGGTGAAGTCCAGTG		59	NA	
Drosophila melanogaster	50	pgant6	FBgn0035375	FBtr0072972,FBtr0072973	2	2	2	148	3L	2784362	2784381	GAGAACAGTATGAGCTAAGC		57	2784492	2785004	CTTGTAGTTCTTGTGCAGG		58	NA	
Drosophila melanogaster	50	CG1927	FBgn0027547	FBtr0072853	2	1	1	182	3L	1967128	1967207	TGAGCAACAACATAATCCTG		58	1966965	1966983	GTGGACTACGGAAGTACAG		59	NA	
Drosophila melanogaster	50	mu2	FBgn0002872	FBtr0072856	2	1	2	121	3L	1945586	1945661	CAAAGTTGCATCAGATTCGA		58	1945484	1945502	GTATCGACTCCTCATTGGG		59	NA	
Drosophila melanogaster	50	ru	FBgn0003295	FBtr0072681	2	1	1	91	3L	1384766	1384784	AAACATCATGAAGGGTCTG		57	1384838	1386228	CATAGAAACACGAGAACCTC		57	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-841c	FBgn0083017	FBtr0113522	3	1	1	110	2R	17218090	17218108	CAAATGCACTCTGTGTCAC		59	17218181	17218200	ATGTAATCACCCTGATACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9083	FBgn0035077	FBtr0114563	3	1	1	68	2R	20786124	20786143	CTATGAGATTCACTCCCACG		59	20786174	20786192	TAGGTGTTCACATGACCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pof	FBgn0035047	FBtr0072327,FBtr0072328	3	2	2	91	2R	20558284	20558303	GCAATTTAGACAGAACAGCT		58	20558418	20558436	CTAGTAAACAACCTGTGGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3570	FBgn0035035	FBtr0072317	1	1	1	68	2R	20491421	20491439	GTACTTCTTTACCGAGGGC		59	20491471	20491489	CTGTAGGATTCCAGGAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	prom	FBgn0050164	FBtr0072360	3	1	1	85	2R	20308343	20308873	GAGCGGAACTATACATTGGA		59	20308277	20308296	CCATTTACCGTAGAGGTCAG		59	NA	
Drosophila melanogaster	50	CG30419	FBgn0050419	FBtr0072275	2	1	1	77	2R	20102705	20102723	ACTACAACATGGGCTACTG		58	20102646	20102664	AGTGAGTCATCTGGAAGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13564	FBgn0034973	FBtr0072246	1	1	1	198	2R	19968524	19968543	GAAATTGCTCTGAAGATCGA		57	19968704	19968722	AATGGGATAGGTTTGTGGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	MAN1	FBgn0034962	FBtr0072166,FBtr0072167	1	2	2	60	2R	19922795	19922813	GGAAGTTCAACTATCCCAC		57	19922836	19922855	GTTAGCCTTTCTTTCCTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5549	FBgn0034911	FBtr0072125	1	1	1	90	2R	19722050	19722068	GATATTCTTCGCACTGAGC		58	19722122	19722229	AGTTCCACAATTGTAGCAG		57	NA	
Drosophila melanogaster	50	Pal	FBgn0020623	FBtr0089502,FBtr0089501,FBtr0089500	3	3	3	161	2R	19576610	19576628	GGGAATTACTGGATCACGG		59	19576820	19576900	GATGAAGAACTCTCCGGTG		59	NA	
Drosophila melanogaster	50	CG13558	FBgn0034869	FBtr0072056	1	1	1	87	2R	19387288	19387306	TACGAGGAGATCTACGAGC		59	19387357	19387375	CTATATGGTACTGGCGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3520	FBgn0034859	FBtr0072027	2	1	1	80	2R	19286463	19286541	GATCTGTCAGGAGAAACCC		59	19286401	19286420	TCATCGGAGGAATGATTGAG		59	NA	
Drosophila melanogaster	50	ord	FBgn0003009	FBtr0072047	1	1	1	137	2R	19159464	19159546	AATACACTAGCTTCGCCTC		59	19159345	19159363	CTGAAGAATGGGTTTGCAG		59	NA	InUTR
Drosophila melanogaster	50	Klp59C	FBgn0034824	FBtr0071975	1	1	1	60	2R	19012702	19012720	CTTCCGTTTCGATTACGTC		58	19012660	19012678	TGTGAATTCGTAGACCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9895	FBgn0034810	FBtr0071986	1	1	1	106	2R	18901288	18901306	CTTCGACTCTTGGAGTCTC		59	18900669	18900687	CATTGCTATAGCCAACTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9826	FBgn0034784	FBtr0071895,FBtr0071894	2	2	2	60	2R	18728968	18728987	GGGCATATCCTATGTGTCTG		59	18729007	18729028	GAATATTAGCCAGAGGAAACAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10384	FBgn0034731	FBtr0071831	2	1	1	60	2R	18358984	18359005	GATTAGCGAATATTTCTAGGCG		59	18359024	18359044	GAGAGTACAAGTACAAGTACG		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	ppk12	FBgn0034730	FBtr0071830	2	1	1	80	2R	18316617	18316635	ACGTTTATTTCCGGGAGTC		59	18316679	18316814	CGACGTTTGACAAGAACTC		59	NA	
Drosophila melanogaster	50	Gr58c	FBgn0041237	FBtr0071727	1	1	1	60	2R	17864579	17864597	GATTTGTGCTCCTAACCCA		59	17864620	17864639	TTACTCTCGCAATTAACCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30290	FBgn0050290	FBtr0071672	2	1	1	92	2R	17579803	17579822	ACATAGATCTAGGCAAGTGG		58	17579877	17579952	TATTATCGCAAATCCCGGT		58	NA	
Drosophila melanogaster	50	CG10440	FBgn0034636	FBtr0071692	3	1	1	160	2R	17449379	17449400	GCCACATTCTGAACTTTATGAG		59	17449038	17449056	CAAATAGTTGCCATTGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG30288	FBgn0050288	FBtr0113367	1	1	1	106	2R	17407683	17407703	GTCAGAGTAATGATTTCGGGA		59	17407478	17407555	CGCACATTCATATACATTGGG		59	NA	
Drosophila melanogaster	50	MESK2	FBgn0043070	FBtr0089710,FBtr0089703	3	2	9	181	2R	17399388	17399406	ATATCACAGGTTCGCTCTC		58	17399675	17399908	GAAGTACTTGACGTAGCCC		59	NA	
Drosophila melanogaster	50	CG34202	FBgn0085231	FBtr0112395	2	1	1	77	2R	16640462	16640480	TCTCCACCAATGATCTGGA		59	16640521	16640539	CGCTATTGGCCTCATACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	maf-S	FBgn0034534	FBtr0086230	1	1	1	60	2R	16528702	16528721	GTCCAATTCCGGATATTACC		57	16528743	16528762	CGATTAAGATCCCTTACCGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13423	FBgn0034513	FBtr0086217	1	1	1	60	2R	16424978	16424996	CTGAATGATATGACAGCGG		58	16425020	16425038	CTAGATTCACCGTACAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8920	FBgn0027529	FBtr0086280,FBtr0086279	3	2	3	132	2R	16207405	16207423	ATCGTCGCAGATTACATGG		59	16207518	16209192	TGATGAACACCTGATTACCG		59	NA	
Drosophila melanogaster	50	CG11055	FBgn0034491	FBtr0086271,FBtr0086270,FBtr0086272	3	3	3	141	2R	16148062	16148142	CTTACACTTAACATGGACCC		57	16148245	16148324	CTTCGTTGGATAACATTGTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Elongin-C	FBgn0023211	FBtr0086541,FBtr0086540	2	2	2	65	2R	15332849	15332867	AGGTCTGCATGTACTTCAC		59	15332802	15332820	GGAATTCGGGTATTTCGGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tab2	FBgn0086358	FBtr0086516	1	1	1	291	2R	15190373	15190454	CTGCTTAAATGAACCGCAG		59	15190709	15190727	TAACAGTTGCTGTTGACTC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	wbl	FBgn0004003	FBtr0086510	3	1	1	71	2R	15137580	15137598	AGGACTATGGAGAACTGGA		58	15137837	15137855	TACTCGGGAAGTTCTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)03709	FBgn0010551	FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616	1	6	6	191	2R	14707870	14707888	GATGATCAACATCTCGCTG		58	14708043	14708123	ATGAGTAGGGATACCTGCT		59	NA	
Drosophila melanogaster	50	l(2)08717	FBgn0010651	FBtr0086634,FBtr0086635	3	2	2	129	2R	14685321	14685339	TGAACCACATCGATCTGTC		59	14685150	14685228	GTTACGCTTGTCTCATCGA		59	NA	
Drosophila melanogaster	50	CG15094	FBgn0034392	FBtr0086636,FBtr0086637	3	2	2	185	2R	14682504	14682584	TCTGGGATGAGACAAATCC		58	14682337	14682356	GATCCTCAGTACCTTCATCC		58	NA	
Drosophila melanogaster	50	Pepck	FBgn0003067	FBtr0086700,FBtr0086701	2	2	2	60	2R	14426500	14426518	CGTGAAGGAGATCTTCTCG		59	14426542	14426560	GCGAATATCCTTGACCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10924	FBgn0034356	FBtr0086699,FBtr0113093	1	2	2	60	2R	14421137	14421157	GATGAAGTTCGATAACAAGGG		58	14421179	14421197	GCCAAAGAATCCATTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5756	FBgn0034301	FBtr0086785,FBtr0086786	2	2	2	138	2R	13992698	13992716	CAAGTCCAGCGAGTATACG		59	13992433	13992597	CGCGTAATAACCTTCATGTC		59	NA	
Drosophila melanogaster	50	PpY-55A	FBgn0003140	FBtr0086817	1	1	1	60	2R	13843723	13843744	TTATTTCTCGGTGACTATGTGG		59	13843684	13843703	ATAGCAGGCAAATTGTTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	UbcD10	FBgn0026316	FBtr0089553	3	1	1	80	2R	13676393	13676414	CGCCCAAGATTAACTTTAAGAC		59	13676334	13676352	TACTGATAATGGGCAAGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15611	FBgn0034194	FBtr0086982,FBtr0086981	3	2	2	89	2R	13000829	13000848	AGCTTCTATTGCTATGTGAG		57	13000900	13000981	TTGATATGTCTGCAACCAC		57	NA	
Drosophila melanogaster	50	CG30461	FBgn0050461	FBtr0100249,FBtr0100251,FBtr0100250,FBtr0100252	1	4	4	60	2R	12883879	12883899	GCAGCTTATTCTCAGTAATCG		58	12883785	12883803	TTTCTTGATTCGCGAACAG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Lis-1	FBgn0015754	FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240	2	6	6	64	2R	12070571	12070592	GCTCAAATGATCAGACAATACG		59	12070617	12070702	GCGTAATTCAACCTTGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33464	FBgn0053464	FBtr0087305	2	1	1	66	2R	11759748	11759766	AAACCGAAGATTCCTCCTC		58	11759700	11759718	TTACTGTCCTCGGTATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fus	FBgn0023441	FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343	3	4	6	111	2R	11555363	11559507	CAACTGGACAGATCGTAGG		59	11555270	11555289	GTGTTATTGGTGACACTCGA		59	NA	
Drosophila melanogaster	50	aPKC	FBgn0022131	FBtr0110996,FBtr0110997,FBtr0087426	3	3	6	101	2R	10849144	10849164	GCCAGATTATCATTACCACCA		59	10849002	10849081	TGGTAAATGGCTGATCCAG		59	NA	
Drosophila melanogaster	50	tra2	FBgn0003742	FBtr0089617,FBtr0089620,FBtr0089615,FBtr0089619,FBtr0089616,FBtr0089621	2	6	7	141	2R	10490376	10490678	GATTGACGCACAAACACAG		59	10490253	10490274	TTGGGTTATAGAGAAATCGACG		59	NA	
Drosophila melanogaster	50	CG34379	FBgn0085408	FBtr0112616,FBtr0112614,FBtr0112615	2	3	3	143	2R	10238326	10238345	CCGACGAATTTAATCAAGCA		58	10238514	10238532	TAGCTTGGCGAATAGATCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ih	FBgn0028428	FBtr0100372	3	1	4	87	2R	10179875	10181606	GAGGAGGTCTATATTCTGCAG		59	10181655	10181673	TTGTCAAGCCATCTTTGTC		58	NA	
Drosophila melanogaster	50	CG6701	FBgn0033889	FBtr0087607	1	1	1	82	2R	9864800	9864889	GAAGAAATATCCAACGCCC		58	9864736	9864755	AGGTCTTTAAGGTGAATCCA		58	NA	
Drosophila melanogaster	50	Cp1	FBgn0013770	FBtr0087592,FBtr0087591,FBtr0087593	1	3	3	137	2R	9849731	9849749	GAACAAATCACAATGCGCA		59	9854268	9854286	ATCCTGATAGTTCTTGCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	AGO1	FBgn0026611	FBtr0087613,FBtr0087612,FBtr0087614	1	3	3	102	2R	9835755	9835774	GTATCAGCTATGCCATACGT		59	9835606	9835690	CAGATGATATCTGGCACGG		59	NA	
Drosophila melanogaster	50	shot	FBgn0013733	FBtr0087619,FBtr0087618	1	2	6	137	2R	9805406	9809060	AGTTTAAAGACGAACGCGA		59	9804646	9804667	CCAGGAGTGAAAGTAAATTGTG		59	NA	
Drosophila melanogaster	50	CG30485	FBgn0050485	FBtr0087640	2	1	1	60	2R	9738415	9738433	CAAGGGCACAAACTATGGA		59	9738456	9738475	CTTCTCACTACTGGTCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6280	FBgn0033866	FBtr0087628	3	1	1	183	2R	9643168	9643186	ATCGAAGGTCCAAACTTGG		59	9643454	9643472	TGTAACCATGTCCATTGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	drk	FBgn0004638	FBtr0087693,FBtr0087697,FBtr0087698,FBtr0087696,FBtr0087694,FBtr0087695	3	6	6	92	2R	9385227	9385305	GAATCACGACTGGTATTACG		58	9385154	9385172	CTGATGCGTATCAAGAAGG		57	NA	
Drosophila melanogaster	50	drk	FBgn0004638	FBtr0087693,FBtr0087697,FBtr0087698,FBtr0087696,FBtr0087694,FBtr0087695	3	6	6	92	2R	9385227	9385305	GAATCACGACTGGTATTACG		58	9385154	9385172	CTGATGCGTATCAAGAAGG		57	NA	
Drosophila melanogaster	50	CG17050	FBgn0033831	FBtr0087719	1	1	1	90	2R	9277948	9278041	CTGATGTTTCAGGCTTTGG		59	9277876	9277897	CAGAGGTATACAATTCTTCGAC		58	NA	
Drosophila melanogaster	50	CG4716	FBgn0033820	FBtr0087747,FBtr0087746	3	2	2	61	2R	9144352	9144373	CCATATTATCAAACGATCTGCC		59	9144393	9144413	CTTTGTCATTATGCTCCTCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4643	FBgn0043010	FBtr0087762,FBtr0087763	1	2	2	76	2R	9108969	9108987	TCGTTCGAGAAGAACTACG		59	9108848	9108866	GATACTGTGGGATAGAGCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG17574	FBgn0033777	FBtr0113077,FBtr0113078	3	2	4	160	2R	8745709	8745727	ATGATTCGGGCATCTACTG		59	8745062	8745081	CATTCTCGATAAGTCAGGGA		58	NA	DesignNoJunction
Drosophila melanogaster	50	Dgkepsilon	FBgn0020930	FBtr0087853	2	1	1	112	2R	8646748	8646766	GTATGATGGAGGTGTTCGG		59	8646839	8646915	CTTGACTTGTAGCCTTATTTGC		59	NA	
Drosophila melanogaster	50	mos	FBgn0033773	FBtr0087865	1	1	1	87	2R	8640072	8640090	TCATCATGGAATGTCCGAG		59	8639944	8640023	AGAGTTATTAAGACCCTGTGC		59	NA	
Drosophila melanogaster	50	CG8594	FBgn0033755	FBtr0087826	2	1	1	94	2R	8460032	8460052	GAATAGGAACATCAACAGCAG		59	8460108	8460210	CTTCGTAGTCCAAGCTCTC		59	NA	
Drosophila melanogaster	50	Dyb	FBgn0033739	FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930	2	5	6	106	2R	8335509	8335527	ATCATAACCTCAACAAGCG		57	8335596	8335677	CGAGTTATCACTTGTGTACG		58	NA	
Drosophila melanogaster	50	CG8834	FBgn0033733	FBtr0113073,FBtr0087954	2	2	2	81	2R	8309523	8309597	GTGCTAGATGATGCAACCT		59	8309460	8309480	TATCGTACTCTTGTCCATCAC		59	NA	
Drosophila melanogaster	50	CG13178	FBgn0033685	FBtr0088019	3	1	1	60	2R	8031206	8031225	TGGATCAAGATTACTACGCG		59	8031165	8031186	CTCTTCGCATAGATATTATCGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30035	FBgn0050035	FBtr0088073	1	1	2	109	2R	7558674	7560228	ATTTGGACACAGGTCTTGG		59	7560301	7560319	ATATTCCGATCGGTCATCG		59	NA	
Drosophila melanogaster	50	CG7777	FBgn0033635	FBtr0088136,FBtr0088137	1	2	2	244	2R	7327365	7327484	CTCAATGAGCTCAAATCCA		57	7327753	7327771	ATCAAGCTAATTCGTCCTG		57	NA	DesignRelaxed
Drosophila melanogaster	50	CG34363	FBgn0085392	FBtr0112584,FBtr0112585	3	2	2	80	2R	6226461	6226543	GGAGAACATGTTTAATGACCTC		59	6226402	6226421	GCTGATAGAATGGTCAACTG		58	NA	
Drosophila melanogaster	50	KCNQ	FBgn0033494	FBtr0088371,FBtr0088372	1	2	2	80	2R	6041096	6041322	ACATAGACAGGAACTGATCAC		59	6041036	6041054	TCCCACATATAGACCAGGA		58	NA	
Drosophila melanogaster	50	gem	FBgn0050011	FBtr0089758,FBtr0089759	1	2	2	95	2R	6023164	6023252	ACATGGACGATTATAGCCAG		59	6023310	6023328	TTGAAAGATAGGCCGTGAG		59	NA	
Drosophila melanogaster	50	mRpL42	FBgn0033480	FBtr0088403	3	1	1	180	2R	5954332	5954351	GTTTATACGGAGGATTTCGT		57	5954494	5954512	TGAATCTCGCTGATCTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30345	FBgn0050345	FBtr0088584	3	1	1	84	2R	5037267	5037285	GCCATAGTAAGCCTCTTCC		59	5037333	5037417	AAAGGTAGCCTGTAAACGT		58	NA	
Drosophila melanogaster	50	alc	FBgn0033383	FBtr0088624,FBtr0088625	3	2	2	72	2R	5023270	5023288	CAAGGATACACCGCTATCG		59	5023157	5023177	GTACAAGTGGTTAAGCATCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8170	FBgn0033365	FBtr0088665	1	1	2	86	2R	4909291	4909309	CTACAGTCTGCAGGATCTG		59	4908982	4909241	GTGATGTCGACTTTCTCCT		59	NA	
Drosophila melanogaster	50	mXr	FBgn0050361	FBtr0088755,FBtr0088754	3	2	3	118	2R	4373797	4374330	GAATCAAGGCTTTCGAGGA		59	4373697	4373717	TATATTGTCGTAGGCGATGTC		59	NA	
Drosophila melanogaster	50	pdm3	FBgn0033288	FBtr0114491,FBtr0088741	3	2	2	142	2R	4282117	4282546	CAGAACATGTTCGAGAAGC		58	4282747	4282766	CCGATATAGTCGGTTAGGTG		59	NA	
Drosophila melanogaster	50	CG8707	FBgn0033272	FBtr0088807	2	1	1	94	2R	4050208	4050291	AGGTGTTTATACACAAGGTGG		59	4050134	4050152	CTCGTTAAGGTCATCCGAC		59	NA	
Drosophila melanogaster	50	CG11198	FBgn0033246	FBtr0088871,FBtr0113053,FBtr0088872	2	3	4	192	2R	3872610	3872629	CAAATGAGTCCAATGACACG		59	3870501	3872392	GACATACTCGGCCTTAACC		59	NA	
Drosophila melanogaster	50	CG8726	FBgn0033244	FBtr0088873,FBtr0088874	1	2	2	80	2R	3858089	3858107	ACAAGTGGCTACATATGGG		59	3857970	3858045	TGTAGATGACCATATGCGT		58	NA	
Drosophila melanogaster	50	Dscam	FBgn0033159	FBtr0089016,FBtr0111061,FBtr0089017,FBtr0089019,FBtr0111074,FBtr0089018	2	6	60	123	2R	3219877	3231794	ACAAGTTAATGTACCTCCCA		58	3219773	3219792	TTTCTTCCATGTAACTTGGG		57	NA	
Drosophila melanogaster	50	CG30384	FBgn0050384	FBtr0089048	3	1	1	60	2R	3072305	3072324	TTCTCTTACGCATTTCAGTC		57	3072347	3072365	CCTCACGTAGATGAACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30159	FBgn0050159	FBtr0089761,FBtr0089760	2	2	2	158	2R	2880914	2880932	TTTCCCGATCTTCACTAGC		59	2881054	2881072	CAGACAACAAAGTCCTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30156	FBgn0050156	FBtr0086184	2	1	1	80	2R	2869297	2869316	TGGAAGTAGAAATCGAGGAG		58	2869179	2869255	ACAGATTATCCCTCCAACTC		58	NA	
Drosophila melanogaster	50	coro	FBgn0033109	FBtr0086208,FBtr0086209,FBtr0086207	1	3	3	139	2R	2752071	2752153	TCGGTATTTCGAGGTAACG		59	2751950	2751968	GATAGAACTTGGCGACCTC		59	NA	
Drosophila melanogaster	50	CG30438	FBgn0050438	FBtr0086068,FBtr0086069,FBtr0086070	2	3	4	97	2R	1414858	1414876	GGACATCCTAATGGCTACG		59	1416315	1426767	AGGTAATATTGTGACCTCTGG		58	NA	
Drosophila melanogaster	50	Atf6	FBgn0033010	FBtr0086081,FBtr0086079	3	2	3	154	2R	1036542	1036563	CAACGTATGATTAAGAACCGAG		59	1040309	1040328	AGCAGAAATATCTGATCCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	snRNA:U5:38ABa	FBgn0043022	FBtr0081315	1	1	1	61	2L	19811993	19812012	GAGGAACACTCTAATGAGTC		57	19811951	19811972	CCCAACTAAATATTTAGCCAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1832	FBgn0032979	FBtr0085964,FBtr0100407	2	2	2	130	2L	22168219	22168237	ATACAATTACGCCCTGGTC		59	22168054	22168125	TGGATATGGTGTTAGCTGC		59	NA	
Drosophila melanogaster	50	tio	FBgn0028979	FBtr0089377	3	1	1	60	2L	22021777	22021795	CTCCAGCTCTTCAAACTCC		59	22021816	22021837	GGGCATAGTTTCCTTAATTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ret	FBgn0011829	FBtr0081496,FBtr0081494,FBtr0081493,FBtr0081492,FBtr0081495	1	5	5	88	2L	21184334	21184355	GAGCCTGTTAATGTTAAGATGG		59	21184212	21184288	CGATGAACCAACTTTAACTCAG		59	NA	
Drosophila melanogaster	50	mRpS18B	FBgn0032849	FBtr0081339,FBtr0081338	1	2	2	77	2L	20097092	20097110	AACATTACCCGGAATAGCC		59	20097033	20097051	TTCTTCAGTCGAAGTCTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Victoria	FBgn0053117	FBtr0081309	2	1	1	60	2L	19913221	19913242	TTGCCTTCTACGAGAAATACTC		59	19913182	19913203	ATACTAATCCTTTCCTGAGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	swm	FBgn0002044	FBtr0081244,FBtr0081245	3	2	2	71	2L	19496862	19496971	ACTTTAAGAACTTCGGCGA		59	19497003	19497024	CGTATGAGAGTATTAACTGTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10237	FBgn0032783	FBtr0081207,FBtr0081209,FBtr0081208	1	3	3	91	2L	19437120	19437677	GTCTTCTAGAAGCGGAGAC		59	19437047	19437065	TTCCGGGTAATACTTGCAG		59	NA	
Drosophila melanogaster	50	CG31793	FBgn0051793	FBtr0081138	1	1	1	80	2L	19006222	19006240	TTGTCCTGATAATGCTGTG		57	19006284	19006361	TGTTCTTAACCCAGTAGGA		57	NA	
Drosophila melanogaster	50	CG10639	FBgn0032729	FBtr0081186	3	1	1	169	2L	18972646	18972664	AATGGACGGATCTATCTGG		58	18972441	18972459	ATTTGGACATCTCGCTGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31752	FBgn0051752	FBtr0081119	2	1	1	60	2L	18840040	18840059	GCATGTATCTGAACACTCTG		58	18839999	18840018	GGGACCGTAACTAGATACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Grip71	FBgn0032705	FBtr0081099	3	1	1	92	2L	18710303	18710321	TCAAAGTCTTTGTCCTCCA		58	18710377	18710450	CTTAAGGTCTGTTGCAGTG		58	NA	
Drosophila melanogaster	50	CadN	FBgn0015609	FBtr0100316,FBtr0100313,FBtr0081020,FBtr0081016,FBtr0081013,FBtr0081015	1	6	12	101	2L	17651479	17655676	CATACTGATACTCGTCTTGGT		59	17651398	17651416	TTGATGATATTCTCGCGCA		59	NA	
Drosophila melanogaster	50	CG5559	FBgn0032653	FBtr0080987	3	1	1	101	2L	17602613	17602633	GTCTATAATGAGGCTCTTGCT		59	17602695	17603126	TTCACTTGATCCCAATAGGC		59	NA	
Drosophila melanogaster	50	BicC	FBgn0000182	FBtr0080804,FBtr0080803	1	2	3	153	2L	16044465	16044798	TCCATGACATCATGAACAC		57	16044978	16044996	GAGTCAAGACTGCTAAGGA		58	NA	
Drosophila melanogaster	50	beat-Ic	FBgn0028644	FBtr0080801	1	1	1	94	2L	16034700	16037145	TTAATGGTATTGTGGTGCC		57	16037203	16037221	ATGTATGGCACTTGTAACC		57	NA	
Drosophila melanogaster	50	CG18480	FBgn0028518	FBtr0080755	1	1	1	60	2L	15630510	15630529	TGATATAACCACCATTGACG		57	15630669	15630687	CGTAAGATTAAGCAGGTGG		57	NA	DesignNoJunction
Drosophila melanogaster	50	Pect	FBgn0032482	FBtr0080440,FBtr0080442,FBtr0080441,FBtr0080439	2	4	4	132	2L	13209724	13209743	AGAAACTGGGTGACTATCTG		58	13209838	13209921	TCATTGACAAACTTGCAGG		58	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020	1	17	17	86	2L	12723994	12724013	AGACCTATCAGATCAGACAG		57	12724062	12724215	ATTTGAGCACCTTAATGCC		58	NA	
Drosophila melanogaster	50	bru-2	FBgn0043904	FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351	3	4	4	139	2L	12385726	12389193	ATTGGAGCTATAAAGGCCC		59	12389295	12389314	GTATTGATGCCACAGAATGC		59	NA	
Drosophila melanogaster	50	CG31759	FBgn0051759	FBtr0080349,FBtr0080348	3	2	2	60	2L	12208526	12208545	TGCAGGTATTAGATACGGTC		58	12208568	12208586	TTTAGGGATGAAATCCACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6583	FBgn0032420	FBtr0080358	1	1	1	231	2L	12171920	12172130	GAGAGGATTCATCTGGGAC		58	12171707	12171725	AAATATTCTGGAGGCAACG		57	NA	DesignRelaxed
Drosophila melanogaster	50	Tom70	FBgn0032397	FBtr0080311,FBtr0080309	1	2	3	81	2L	12037205	12037223	GAACTTTCCATCTGCTGTG		58	12037052	12037161	GGATCAGCATAGTCATTAGC		57	NA	
Drosophila melanogaster	50	CG12602	FBgn0032373	FBtr0080255	2	1	1	140	2L	11743879	11743898	AGTACGACAGCTATATTGGC		59	11744001	11744081	TCATGAACTCAACCCAGTG		59	NA	
Drosophila melanogaster	50	CG33129	FBgn0053129	FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172	3	4	4	118	2L	10966083	10966101	GATCAAGACCACCTGTGAC		59	10965901	10966002	ATTGGTCAATGAACTTTGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	porin	FBgn0004363	FBtr0080183,FBtr0100584,FBtr0080182	3	3	3	71	2L	10848756	10848774	GAAGACTAAGACCTCGTCG		59	10848703	10848721	AAGACCTTTCCAGACTCCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Nos	FBgn0011676	FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486	1	9	10	160	2L	10831340	10831358	GTCACAGGATTATCGGTCG		59	10826070	10830602	TCGAGCAGGAAAGAATCTC		59	NA	
Drosophila melanogaster	50	w-cup	FBgn0032269	FBtr0080132	1	1	1	60	2L	10577061	10577080	ATACCATCATACCGCAATCC		59	10577020	10577038	CTTGCCTCCATTTGATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4968	FBgn0032214	FBtr0079987	2	1	1	98	2L	10307483	10307565	TTCACGAAACGTTCATGGA		59	10307626	10307645	GCTCATTGAAGATCTTGTGC		59	NA	
Drosophila melanogaster	50	CG31714	FBgn0032180	FBtr0113032	1	1	1	134	2L	10068738	10068756	TCATCCTGCTCTTCTTTGC		59	10068342	10068641	AGAGTAATCCAAATCGCCTG		59	NA	
Drosophila melanogaster	50	CG4658	FBgn0032170	FBtr0079886,FBtr0079885,FBtr0079887	3	3	3	146	2L	9959099	9959555	CATGTCCATAGAGGTGTGG		59	9959665	9959683	AGATATCGATCCGGATGGT		59	NA	
Drosophila melanogaster	50	Taf11	FBgn0011291	FBtr0079924	2	1	1	68	2L	9763152	9763170	ACGAAATCCTCTTTCCCAC		59	9763102	9763120	ATTTCAGGTCGACATCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	emb	FBgn0020497	FBtr0079663	3	1	1	82	2L	8406220	8406238	ATGCACCTTTATTGACGAG		57	8406284	8406391	CATAGAACGTGTGAACCTG		58	NA	
Drosophila melanogaster	50	CSN8	FBgn0028835	FBtr0079646	2	1	1	81	2L	8365258	8365276	TGCCGATTTCTTCAAACAC		58	8365318	8365399	GCGTTGCTTATTTAGAAGATCC		59	NA	
Drosophila melanogaster	50	Btk29A	FBgn0003502	FBtr0079616,FBtr0079618,FBtr0112836,FBtr0079615,FBtr0079617,FBtr0112835	3	6	6	117	2L	8262033	8262051	ATGACTCACAAGAGCACTG		59	8261860	8261953	ACATACCATTCATAGCGCTC		59	NA	
Drosophila melanogaster	50	CG8460	FBgn0031996	FBtr0079586	1	1	1	186	2L	8197811	8197886	AACGGTTAAAGTGTTTCCC		58	8198036	8198054	TTTGTCATCTATGCGTCCA		58	NA	
Drosophila melanogaster	50	CG7196	FBgn0031944	FBtr0079482,FBtr0079483	2	2	2	60	2L	7765142	7765221	CAGAAATGCCAAGGATATTCG		59	7765243	7765261	CTCACCCATGATGATCTCC		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG6441	FBgn0031920	FBtr0079451,FBtr0079450	2	2	2	151	2L	7476342	7476360	AAATTTACCAGCCATCTGG		57	7476609	7476627	ATTAGACATGGCAATCCTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG15818	FBgn0031910	FBtr0079442	2	1	1	60	2L	7411338	7411358	GTTGAAAGATGGACAGAAGAG		58	7411379	7411398	GGATAGAGTCTTCTGGATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	nop5	FBgn0026196	FBtr0079369	1	1	1	60	2L	6918000	6918018	TATTACCGACAACATTGCC		57	6917958	6917976	CATATTATCCCTGGTGCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9547	FBgn0031824	FBtr0079263	2	1	1	60	2L	6493172	6493190	CAGCGACGAATATCATGTG		58	6493130	6493150	CTCATAGGTGTTAACTGACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr	FBgn0015623	FBtr0079251,FBtr0079250	3	2	2	80	2L	6344877	6344896	TCGCTGAGTATTGTACTGAC		59	6344939	6345042	ATTTCTCCTTTCCTTCGGG		59	NA	
Drosophila melanogaster	50	Hsp60C	FBgn0031728	FBtr0079111	2	1	3	195	2L	5662859	5662878	CCTGAAATATCACACTTCGT		57	5668871	5668951	CATGTTGACTGATATTTGCC		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG14020	FBgn0031707	FBtr0079094	2	1	1	60	2L	5518572	5518590	TGCAGGAGACATACTACAG		58	5518614	5518632	AGGTCAATGATGAGACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34126	FBgn0083962	FBtr0110840	2	1	1	80	2L	4991071	4991154	GGATAATTATAGGCACAAGACC		58	4991195	4991213	ATGCTTATATCGTCCTGGG		58	NA	
Drosophila melanogaster	50	Traf1	FBgn0026319	FBtr0112925	3	1	3	130	2L	4372531	4378918	GAACAGATTATCTATCCCGGTC		59	4379009	4379027	TTACAGGCGTTGAGATGTC		59	NA	
Drosophila melanogaster	50	CG31960	FBgn0051960	FBtr0077494	2	1	1	60	2L	3785115	3785133	CGAAGGAATTGGGAATGGT		59	3785157	3785175	TGAACCTCCGATTCATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cutlet	FBgn0015376	FBtr0077541	2	1	1	97	2L	3710172	3710190	TCCAGAGGCATTCAAACTG		59	3710037	3710113	CGATTTCATCCAGAACTATGC		59	NA	
Drosophila melanogaster	50	CG16713	FBgn0031560	FBtr0077547	3	1	1	73	2L	3695113	3695131	ATTTATCTACGGAGGCTGC		59	3695058	3695077	GCAAACACTTGTCTTCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34175	FBgn0085204	FBtr0112366	2	1	1	150	2L	3398230	3398248	GGATACAGGGTATCAGGAG		57	3398362	3398380	AGCCTCTTTATTCTCGGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3277	FBgn0031518	FBtr0114460	1	1	1	102	2L	3315959	3316049	GAAACCTGCTAAGCTATTTGC		59	3316113	3316131	TTGGTCCTGGTCATAATCG		59	NA	
Drosophila melanogaster	50	gammaTub23C	FBgn0004176	FBtr0077641	1	1	1	124	2L	2973361	2973439	ACTCCAAGCTCTACAATCC		58	2973525	2973545	GTCAATGATGTCGAATACCTC		58	NA	
Drosophila melanogaster	50	NTPase	FBgn0024947	FBtr0077680,FBtr0077682,FBtr0077683,FBtr0077681	1	4	4	142	2L	2881427	2881445	CCTTACCTTCATCTCGACG		59	2881242	2881260	ATTTCTCGTCGCTAGTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Or23a	FBgn0026395	FBtr0077698	3	1	1	60	2L	2654761	2654782	ATCCTGAGAATCTCTGAAATCG		59	2654803	2654821	GATCCTGTTCGTTCTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31949	FBgn0051949	FBtr0077757	1	1	1	60	2L	2300520	2300538	CCGCTTATACTGACAATGG		57	2300560	2300580	GGAAACAGTTGAGAAACACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	dpr3	FBgn0053516	FBtr0091458	2	1	1	106	2L	2066584	2066749	ATAAATCGGTATCCTGGATACG		59	2065723	2065741	TGAGTCCTTCGATTCAGTC		58	NA	
Drosophila melanogaster	50	CG31672	FBgn0028952	FBtr0077825	1	1	1	91	2L	2046211	2046438	TCAAAGAGCCATACATGCA		59	2046493	2046511	TTGGTTATAGACTCCTGGC		58	NA	
Drosophila melanogaster	50	CG7337	FBgn0031374	FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012	1	5	5	129	2L	1937464	1937482	CACAATACGGAGAATGGGA		59	1937575	1938517	TATGGCCTACATTCTCCAG		58	NA	
Drosophila melanogaster	50	Gr22f	FBgn0041249	FBtr0077902	1	1	1	62	2L	1755810	1755828	AACCCTCGAAGATTCACAC		59	1755766	1755784	TCGTACAAGGATGCTAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdlc2	FBgn0026141	FBtr0077925,FBtr0077924	1	2	2	60	2L	1344752	1344770	TCGACAAGAAGTACAACCC		59	1344794	1344812	ACATAGGATCCGAAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	robo3	FBgn0041097	FBtr0077921	2	1	1	96	2L	1287038	1287167	CTTTGGAAGATGTTCCGGA		59	1287227	1287245	TTTGGTTGTGGAGGTAACC		59	NA	
Drosophila melanogaster	50	CG4896	FBgn0031319	FBtr0077968,FBtr0114467,FBtr0077970	1	3	3	80	2L	1181782	1181861	TGAGGGTCTATCCTATCGT		58	1181905	1181923	CTCCTATTTGGTGGAGGAG		58	NA	
Drosophila melanogaster	50	CG14341	FBgn0031315	FBtr0077963,FBtr0077964	2	2	2	61	2L	1166885	1166904	AACTCCAAATGGATCTTGAC		57	1166986	1167006	TATAGTGGACATCGCTTTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lwr	FBgn0010602	FBtr0078081,FBtr0078082	1	2	2	158	2L	541831	541849	CTACACCATCTACTGCCAG		59	541691	541709	TTCCAAACAAACGCTTACC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG3645	FBgn0031238	FBtr0078140,FBtr0078141	1	2	2	83	2L	253880	253963	AGAGATTGTGAGCACACTG		59	253815	253833	ATGGTCTTCTCAAGGTCCT		59	NA	
Drosophila melanogaster	50	kis	FBgn0086902	FBtr0078144	1	1	2	85	2L	229226	229244	CAATCTGTGCTTTGTCACC		59	228268	229177	CATCGTCTTCGTTTATCGG		58	NA	
Drosophila melanogaster	50	CG17163	FBgn0039942	FBtr0113727	1	1	1	80	XHet	60674	60748	CCCATACAACCTAAGCAGG		59	60612	60630	GTCAAAGGCCTTAATGGGA		59	NA	Nonspecific
Drosophila melanogaster	50	CG17599	FBgn0031196	FBtr0077363	3	1	1	103	X	21944492	21944510	CTATCAGCGGGATAAGTGG		59	21944349	21944368	GCCAGTTAACTTTGAAATGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG1678	FBgn0031176	FBtr0077219	3	1	1	283	X	21273722	21273741	CGTGTAATCTTCCTCATCGT		59	21273458	21273476	TTTACATGAAGGACTCGGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG1722	FBgn0031168	FBtr0077237	1	1	1	60	X	21121744	21121762	CAGGACCAGACTCATAGAC		58	21121702	21121720	GAACAGTACCGAAGTACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11710	FBgn0031115	FBtr0089643,FBtr0089642	2	2	2	152	X	20299190	20299268	CATTAAGAAACACGAGGGT		57	20298987	20299005	TGTGGGATAATGACTTGGA		57	NA	
Drosophila melanogaster	50	CG33498	FBgn0053498	FBtr0089611	2	1	1	70	X	20096835	20096935	TGATGGCCATAGTTGAGTG		59	20096783	20096801	ATTCATGGCCTTGTACAGG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12702	FBgn0031070	FBtr0074809	1	1	1	108	X	19654453	19654529	GTAGCAAAGCATGTGTCTG		59	19654363	19654381	AGATCGAGCTTAGATTGCG		59	NA	
Drosophila melanogaster	50	kek5	FBgn0031016	FBtr0074707,FBtr0074708	1	2	2	199	X	19360067	19360085	TTCCAAGATGGACAAGACG		59	19360248	19362351	AGTGATTGGCCACATAGAC		59	NA	
Drosophila melanogaster	50	CG14196	FBgn0031002	FBtr0074691	2	1	1	68	X	19130551	19130569	ACTATTCACCCTGATCGGT		59	19130310	19130328	AGGGTAACCGAATAGTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG18258	FBgn0030827	FBtr0074392	1	1	1	67	X	17107075	17107267	TTGATTCTAGATGCTGCGA		58	17107298	17107316	ATAACCTCTGTGTTCAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12995	FBgn0030826	FBtr0074401,FBtr0074402	2	2	2	71	X	17103955	17103973	CTGATGATCCTTCTGGGTC		59	17103902	17103920	ATTGGAGGACACATCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9673	FBgn0030775	FBtr0074362	1	1	1	103	X	16597338	16597356	CCACAACTGATGAGGAGAC		59	16597253	16597271	ATAGGATGCAGTACCATCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	caz	FBgn0011571	FBtr0074217,FBtr0074218	2	2	2	118	X	16186668	16186931	ATGCAATAGATGTAAGACTCCC		59	16187010	16187028	ATCCACGATCATTTCCTCG		59	NA	
Drosophila melanogaster	50	CG32580	FBgn0052580	FBtr0074205	1	1	1	149	X	15925446	15925530	TCAAACGACGAATCAAAGTG		59	15925642	15925660	GATGTCTCCTCTTGAGCTG		59	NA	
Drosophila melanogaster	50	CycD	FBgn0010315	FBtr0074164,FBtr0074165	1	2	3	151	X	15802347	15802583	AATGGATGATGGAAGTGTG		57	15802214	15802232	CTTTGAAGCCAGTAAGAGG		57	NA	
Drosophila melanogaster	50	l(1)G0022	FBgn0027329	FBtr0074086	3	1	1	81	X	15640933	15641353	GTTAAGATGTTGGTTTCTGGC		59	15641396	15641414	GTTGGATCTGCATTTCGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9030	FBgn0030599	FBtr0073971	2	1	1	84	X	14848371	14848389	AACAGGACTATAGGCAACG		59	14847733	14848326	TGGGTTTAGACATAGAAAGGAC		59	NA	
Drosophila melanogaster	50	NetB	FBgn0015774	FBtr0073940	1	1	1	88	X	14585416	14585692	AATCATATCTCATCCTTGGACG		59	14585349	14585367	GTCCTTCCATTCAAGGACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34346	FBgn0085375	FBtr0112555,FBtr0112554	3	2	2	130	X	13779531	13795531	CATCAGAGCCCATAAGGTG		59	13779419	13779437	CAACTAAGGTTTGCAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11063	FBgn0030530	FBtr0073834	1	1	1	113	X	13721459	13721477	CTGTATCACACCAACTGCT		59	13721130	13721382	GCCCGAGTACATGTAATCC		59	NA	
Drosophila melanogaster	50	CG32640	FBgn0052640	FBtr0073728	1	1	1	60	X	13072239	13072259	GAATAAACATCCACGAACGAC		59	13072280	13072299	CAGGACATTAAATGCTTCGT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2750	FBgn0030376	FBtr0073629	2	1	1	82	X	12002066	12002084	TGAGGAGAATTCGAGAACG		59	12002130	12002277	AATGGTCGTATGTTGTTGC		58	NA	
Drosophila melanogaster	50	Tango4	FBgn0030365	FBtr0073622	1	1	1	281	X	11915309	11915386	TTTAGAGAAGTTGCGACGT		59	11915631	11915649	ATATCTGCATTGCTGTTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15740	FBgn0030340	FBtr0073605	3	1	1	61	X	11738978	11738996	GAACAGGGTCAGGAATACC		59	11738935	11738953	GGATTGGAGAACTCGTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1572	FBgn0030309	FBtr0073543,FBtr0073544	1	2	2	80	X	11450009	11450027	ACGTTCTGTTTACTCCTCG		59	11449817	11449968	GTAAATCAGCTCATAGATCGTC		58	NA	
Drosophila melanogaster	50	CG32683	FBgn0052683	FBtr0071463	1	1	1	156	X	10346314	10346332	GAAGTGGAGATGGATGTCG		59	10321537	10346194	CACGATGAGTGGATCTGTC		59	NA	Nonspecific
Drosophila melanogaster	50	l(1)G0230	FBgn0028342	FBtr0071438	3	1	1	260	X	10107319	10107338	AATGTCCTTCGTTAAGAACG		58	10107635	10107653	AAGAACTTGAGGGTCTTGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG34104	FBgn0083940	FBtr0110783	3	1	2	99	X	10028569	10040467	TTATAATGCCGATGTCAACG		58	10040529	10040547	ATAGCAAAGCTCCCTTAGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG15312	FBgn0030174	FBtr0071421,FBtr0071423,FBtr0071422	2	3	3	71	X	9955171	9955254	GATAGTTCAGACTGGTCGT		58	9955118	9955136	AAGCATACGTAGATTCCCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	HP1b	FBgn0030082	FBtr0071284	1	1	1	62	X	8975459	8975477	TAAAGTGGAAGGGCTATCC		58	8975503	8975521	GACAGTCGAGATTCTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ogg1	FBgn0027864	FBtr0071223	1	1	1	81	X	8585512	8585533	CAAGAAGATTTACGAAGAGGTC		58	8585574	8585652	AAAGAGAATAGCTTGAGCCC		59	NA	
Drosophila melanogaster	50	Atg5	FBgn0029943	FBtr0071065	1	1	1	80	X	7217285	7217387	ATCCAATTGGTGTCCTATACG		59	7217225	7217244	ACTTGGAGAAGTGAATGGTG		59	NA	
Drosophila melanogaster	50	CG32779	FBgn0052779	FBtr0070601	1	1	1	155	X	3697168	3697186	GAATGTCAGTCCTGGTCAG		59	3697305	3697323	CACGAGAGGTTCTTATCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14816	FBgn0023517	FBtr0070366	2	1	1	168	X	1767146	1767164	GTAGTAGCCTCCACAATGG		59	1766930	1767014	GAAGGAACTGAGATGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SNF1A	FBgn0023169	FBtr0070216,FBtr0070217,FBtr0070218	3	3	3	78	X	1270214	1270740	GTACCAGGTCATATCGACG		59	1270781	1270800	AATATAGTCGAACAGCTCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3021	FBgn0040337	FBtr0070173	2	1	1	119	X	921579	921686	GTACATCACTTCCAAACGTG		59	921768	921786	TGAAGGAATGAGCTCAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rbf	FBgn0015799	FBtr0070146	3	1	1	83	X	694341	694420	GCAAGATGAGCATCTACGA		59	694276	694294	TCTCGTTGACAAACTCCTG		59	NA	
Drosophila melanogaster	50	sc	FBgn0004170	FBtr0070073	2	1	1	60	X	290444	290465	GAATCAGTATCATCTCTATCGC		58	290483	290504	GGGATTGGTCTACATTATATGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40743	FBgn0085772	FBtr0114222	1	1	1	90	U	10004111	10004129	AGGACACATGAACATCGAC		59	10004183	10004201	TATGTAGTCCAAGCAGCAC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR40959	FBgn0085777	FBtr0114228	3	1	1	176	U	5913931	5913949	ATGTAAGTTGAGCCGTACC		59	5914087	5914107	CTCGGTCTAGTAAATACACGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG41533	FBgn0085673	FBtr0114121	1	1	1	102	U	7761069	7761087	GTGAAGATCTACTGCCCAC		59	7760849	7760867	ATTTAAGTGGCATCAAGGC		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	l(3)s1921	FBgn0011013	FBtr0085863	3	1	1	61	3R	27572697	27572715	GCTGAAGGCCATCTATCTG		59	27572654	27572672	TGAACATGGCCCTATATCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycG	FBgn0039858	FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799	2	5	5	91	3R	27426460	27426478	ACATCAAGGAGTCGTACAC		59	27426317	27426407	ATCAGGAATCCTCATGTACTG		58	NA	
Drosophila melanogaster	50	CG2267	FBgn0039792	FBtr0085672	3	1	1	117	3R	26454370	26454443	GATGACTGACTGGAAGAGAC		59	26454272	26454290	ATTGGTAGATGCATCCCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2014	FBgn0039669	FBtr0085440	2	1	1	89	3R	25341763	25341781	TGGATGACCTGCTAAACTG		59	25341834	25341852	CAATGTGCATCATTTCGAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14512	FBgn0039639	FBtr0085413	1	1	1	60	3R	24964036	24964055	TAGAGCAGTACAATTTCCGG		59	24963995	24964013	CCAATAATTAGGTCTGCGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6425	FBgn0039449	FBtr0085047	1	1	1	161	3R	22541890	22541908	AGAGCTAAGGGATACTCCG		59	22541682	22541700	AATTGGTACTCGCTGAAGG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Ald	FBgn0000064	FBtr0114544,FBtr0085000	2	2	6	92	3R	22082687	22082706	CAAGAAGGAGAACATTGCTG		59	22082305	22082325	GATCCAGCTGTATAGTTACCA		58	NA	DesignNoJunction
Drosophila melanogaster	50	to	FBgn0039298	FBtr0084810	2	1	1	86	3R	21066320	21066405	CAAAGTAAAGGGTTTCGGA		57	21066455	21066473	TTATAGGGTCCAACGAGTG		58	NA	
Drosophila melanogaster	50	CG11852	FBgn0039297	FBtr0084809	2	1	1	201	3R	21064165	21064238	AAAGATGAACATTCGGCTG		58	21064401	21064421	GTTCTCGAGGAATAAATCCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG13654	FBgn0039290	FBtr0084805	3	1	1	82	3R	21036719	21036984	CATTGAACAACAAGGACTCG		59	21037029	21037047	TGATTATCGGACGGAATCG		59	NA	
Drosophila melanogaster	50	bai	FBgn0045866	FBtr0084758	2	1	1	252	3R	20865337	20865426	ATCATCGACTACATTGCAC		57	20865769	20865789	GCTTAAGATCAACTTCAAGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	tld	FBgn0003719	FBtr0084691	3	1	1	81	3R	20577195	20577264	AGATTCGAGGTGGTATGTG		58	20577307	20577327	TGTAGTCCATAGGATAGTTGG		58	NA	
Drosophila melanogaster	50	CG10208	FBgn0039118	FBtr0084461	2	1	1	95	3R	19599523	19599610	GATAATAAACGTTATCGTGCCC		59	19599449	19599467	ATCACCCTCTTGCATTGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17380	FBgn0039077	FBtr0084428	1	1	1	90	3R	19229099	19229118	GCTGATGAAGACGAATACCT		59	19229028	19229048	TCATTACCGAACCTTCTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	orb	FBgn0004882	FBtr0100228,FBtr0084386,FBtr0084385,FBtr0084384,FBtr0100227	2	5	5	80	3R	19092488	19092506	TGATTCTCACTGTGGTAGG		58	19092371	19092446	CAAGGAATGACTTCAACATCC		59	NA	
Drosophila melanogaster	50	cnc	FBgn0000338	FBtr0084392,FBtr0084393	1	2	7	88	3R	19014842	19017426	TGAATGAGAGCTTCTGTCG		59	19014772	19014790	GTTGCTAACATGTCCACTG		58	NA	
Drosophila melanogaster	50	CG7048	FBgn0038976	FBtr0084257	3	1	1	149	3R	18313400	18313418	AGGTTCGTCATAGACATCG		58	18313592	18313610	TGAGTTATAGAAGCGCGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Takl1	FBgn0046689	FBtr0083996	1	1	1	122	3R	16597974	16597992	GTTGATGGAGTACCTGGAG		59	16597817	16597888	AAGTATGCTAAGGCCTTGG		59	NA	
Drosophila melanogaster	50	CG33934	FBgn0064119	FBtr0091940,FBtr0091939	3	2	2	94	3R	15873183	15873268	CTTTCTGAATGCCAAAGCC		59	15873324	15873344	ACTTGAAGAAGGTGTACTGTG		59	NA	Nonspecific
Drosophila melanogaster	50	CG14297	FBgn0038655	FBtr0083696	2	1	1	106	3R	14724205	14724223	CTGAGGACATGGAACACTG		59	14724293	14724372	TCATTCACGGTGAACTGAC		59	NA	
Drosophila melanogaster	50	CG7702	FBgn0038638	FBtr0083664	3	1	2	300	3R	14495418	14496876	CTATTCTATACTGCGAGGCA		58	14498586	14498604	GAATGTCCTCATGTTGGCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7655	FBgn0038536	FBtr0083479	2	1	1	147	3R	13508837	13508915	TTATTTGATCGTCAACTGGC		58	13509025	13509043	CAGATCCATCACCAAACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alt	FBgn0038535	FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416	1	6	6	163	3R	13500932	13500950	TAGCAACCACAATAGCACC		59	13500724	13500805	ATGTGTTTGTCGTCTTGGT		59	NA	
Drosophila melanogaster	50	kuk	FBgn0038476	FBtr0083398,FBtr0083397	2	2	2	60	3R	12908690	12908709	ATGGCAAAGATAAGTCACAG		57	12908731	12908750	GATTTCTCTACCTTCTGGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14909	FBgn0038458	FBtr0083366	3	1	1	66	3R	12801101	12801119	GATGCAGTTGAATCCACTG		58	12801149	12801167	GTAGGTTATCATGCCGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cctgamma	FBgn0015019	FBtr0083338,FBtr0083337	2	2	2	85	3R	12474348	12474433	CATTAAACGCTATGCCAAGG		59	12474481	12474499	CTTTGTTGATCATCACGCC		59	NA	
Drosophila melanogaster	50	CG14892	FBgn0038447	FBtr0083327	1	1	1	82	3R	12422388	12422407	CCAACATTAGTGGTGATCTC		57	12422452	12422536	GTAGGCATCTCTACACCTG		58	NA	
Drosophila melanogaster	50	CG17930	FBgn0038416	FBtr0083271	2	1	1	223	3R	12153865	12153943	AGCTACCCTTCTCTTTGTG		58	12154190	12154209	CACTCACAAAGATAATGGCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Trax	FBgn0038327	FBtr0083093,FBtr0083092	3	2	2	61	3R	11187825	11187843	GATCGCGGTTAACTTTAGG		58	11187868	11187886	GGAACTGGTAGACATCCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6752	FBgn0038296	FBtr0083029	2	1	1	91	3R	11019523	11019541	GATGCTAGGTTGGGATCAG		59	11019378	11019469	AGGTAAAGCGTAGTATCCAC		58	NA	
Drosophila melanogaster	50	CG17202	FBgn0038043	FBtr0082587	2	1	1	90	3R	8248583	8248663	GTCCTTTAAGCCCATTGAC		58	8248717	8248735	TATGAAGAGCTTGGTCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12946	FBgn0037750	FBtr0082159,FBtr0110789	3	2	2	102	3R	5597853	5597930	CGTAAAGCTGAAGAAAGTGG		59	5597770	5597791	CTTCAGTTCACTTAGAAAGTCG		59	NA	
Drosophila melanogaster	50	Snap24	FBgn0028401	FBtr0082163	2	1	1	208	3R	5588194	5588212	GCAAAGGGTCATTGATGAG		58	5588004	5588022	CATTGATGCGATCAACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11737	FBgn0037592	FBtr0081869	3	1	1	87	3R	4346264	4346336	TCTATAAGTCGGTGTCCTG		57	4346387	4346405	ATAGAGGCAATTAACGACG		57	NA	
Drosophila melanogaster	50	alpha-Est5	FBgn0015573	FBtr0081547	2	1	1	107	3R	3361247	3361464	GATTGTTTGGGATTCCTATCG		58	3361160	3361178	GGAGATGTACTGCTTGACC		59	NA	
Drosophila melanogaster	50	CG2926	FBgn0037344	FBtr0078752	3	1	1	99	3R	1410966	1410984	CTCAATTTACTCGCAGGAG		57	1410392	1410905	GTCATCATCCTTATCAGATGC		58	NA	
Drosophila melanogaster	50	CG31530	FBgn0051530	FBtr0078882	2	1	1	86	3R	578309	578533	AATCTATCTGTGGCAGTGG		59	578241	578259	TCCAGCAAGATCTTCTTGG		59	NA	
Drosophila melanogaster	50	snoRNA:Psi18S-1086	FBgn0083058	FBtr0113602	1	1	1	81	3L	833172	833193	CCAGAAATCAGAAATGTCTGTG		59	833112	833131	TAACGATGCTAGTAAGCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40294	FBgn0058294	FBtr0111150	2	1	1	72	3L	23573503	23573521	TTTCACAGTAAGGAGAGCA		58	23573449	23573467	AATCTTCTGACGGTTTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Las	FBgn0029158	FBtr0078229,FBtr0078228	1	2	2	145	3L	20424694	20424925	CGATTATGCTTATGGGCGA		59	20424567	20424588	CAGAACAATGTAATCCAATCCC		59	NA	
Drosophila melanogaster	50	CG10419	FBgn0036850	FBtr0075032	1	1	1	114	3L	19093100	19093169	AGAGATGTTGGACAATCCC		58	19093004	19093022	AAGAACTAGGACCTGGGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18136	FBgn0036839	FBtr0075040	1	1	1	93	3L	18994615	18994633	CTCCATGAGACCAATACCC		59	18994484	18994558	CAGAAAGTTCCTCCATTGC		58	NA	
Drosophila melanogaster	50	CG14353	FBgn0036771	FBtr0075144	2	1	1	112	3L	17901522	17901541	AAGTCCGTAGAGAAGAAGGT		59	17901616	17901690	ATATCCAGAACTTGCAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16838	FBgn0036574	FBtr0089713,FBtr0089714	1	2	2	169	3L	16128868	16128886	TTGATAAGCCGGTTCAGAG		59	16129422	16129446	CAGATAGTGATAGAATCTACTCGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5161	FBgn0036573	FBtr0075491	3	1	1	79	3L	16124525	16124601	CTAAGGAAAGAGGACCACAG		59	16124465	16124483	TTCCATTTGTGCTCATCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Zn72D	FBgn0017453	FBtr0075493,FBtr0075494	3	2	2	287	3L	16104977	16105111	ATAGGACAGCTAATCGCAC		59	16104708	16104726	GATAGAATGTCTTGGTGGC		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	dbo	FBgn0040230	FBtr0075505	3	1	1	163	3L	15822963	15823119	GCGATATGATCCCAGACAC		59	15823244	15823264	TATTGGTCAGTGGATTGTAGC		59	NA	
Drosophila melanogaster	50	comm2	FBgn0041160	FBtr0075580	2	1	1	104	3L	15691542	15692302	TATCGCAACAATGCAAATGG		59	15691457	15691475	TACTAGGGTGTATTCCGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tfb2	FBgn0036513	FBtr0075595	3	1	1	61	3L	15572651	15572669	TTCCAACGTAAGCGTAAGG		59	15572608	15572626	CTTGTCACATTCAGAGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rgl	FBgn0026376	FBtr0075796,FBtr0075794,FBtr0075793,FBtr0075795	1	4	4	101	3L	13902205	13902223	AACTTTAGTTCGCTCAAGG		57	13902061	13902142	GACTTCCATCCTTTCTTTAGG		58	NA	
Drosophila melanogaster	50	CG17687	FBgn0036348	FBtr0075838	1	1	1	81	3L	13346879	13346956	CCAAATTCAGGAAGCTGGA		59	13347000	13347019	TTCCTTGAAGATGACCTGAC		59	NA	
Drosophila melanogaster	50	CG32117	FBgn0052117	FBtr0075905	2	1	1	61	3L	12896341	12896359	GTACATAGCCATGAAACGC		58	12896298	12896316	AGATCTTCGGTTTGGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10948	FBgn0036317	FBtr0075940,FBtr0075939,FBtr0075938	1	3	3	80	3L	12838206	12838226	AAAGTCGAATCATGAGGAGAC		59	12838014	12838164	TTGAAAGTCACCTCTTCCG		59	NA	InUTR
Drosophila melanogaster	50	CG5906	FBgn0036217	FBtr0076071	3	1	1	60	3L	11864080	11864100	TATTGGTACCAACATCTGGAC		59	11864040	11864060	TGACTACAACCACCTTATAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32087	FBgn0052087	FBtr0076117	2	1	1	61	3L	11726487	11726507	CCTGGAGATGATACTGTATGC		59	11726530	11726548	CTTAGACGCTGAACTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Alg10	FBgn0052076	FBtr0076217	1	1	1	90	3L	11158853	11158935	AGAGTTGTGGCTTCAACTC		59	11158989	11159007	GATCGAAGCGTAGAAACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Sod	FBgn0003462	FBtr0076229	2	1	1	169	3L	11105696	11105714	TCCAAGATTACGCTCTTCG		59	11105545	11105564	ATTATCGCTTAGACCTTGGC		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	simj	FBgn0010762	FBtr0076262,FBtr0076264,FBtr0076263	2	3	3	89	3L	10680182	10680200	GGGACCATAAGCAATTCTG		58	10680253	10680346	GCGATCATTCTTCTGATCG		58	NA	
Drosophila melanogaster	50	CG6674	FBgn0036063	FBtr0076354	2	1	1	70	3L	9964695	9964775	CCAGATTACCAGGTAAACCC		59	9964644	9964662	CTCTGTTCGGAAATGTCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34382	FBgn0085411	FBtr0112620	2	1	1	189	3L	9873509	9873527	GGTCAGGAAACCATCTACG		59	9875408	9875426	CTTGCAGATACACGTAGTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	fry	FBgn0016081	FBtr0076417,FBtr0110843	1	2	2	80	3L	9625378	9625396	AAGTGGGATGAAATTTCCG		57	9625254	9625337	GGATACTATAAAGGCTTCTGTG		58	NA	
Drosophila melanogaster	50	CG33702	FBgn0053702	FBtr0091690	3	1	1	63	3L	9506050	9506143	CACTCGTGTCCATATACAGAG		59	9506007	9506026	GCGTCTTATCGTTGAAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	phol	FBgn0035997	FBtr0076475	2	1	1	60	3L	9446671	9446689	GTAGAACAGAACGAGGAGG		59	9446629	9446648	GTTAGGATGTTAGGGACGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mRpL12	FBgn0011787	FBtr0076511	2	1	1	81	3L	8950442	8950460	GGTGAAGAACCTACTCGAG		59	8950505	8950523	GTCCTCCTTAACGATGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	se	FBgn0086348	FBtr0076623	3	1	1	97	3L	8514298	8514319	CGTGGAGAGGATTATAACTACG		59	8514434	8514452	ATGTAGAAGGCCATCACAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7083	FBgn0035877	FBtr0076604	3	1	1	60	3L	8335248	8335266	TTCGATGAGTGATAGTGGT		57	8335289	8335308	TATGTTCACATGTTCCTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rab-RP3	FBgn0015793	FBtr0076705	2	1	1	138	3L	8291042	8291060	CGAGGTGGACTTTGAAGAG		59	8291162	8291228	GTGTTGGCGTTTAAGTTCG		59	NA	
Drosophila melanogaster	50	CG8492	FBgn0035813	FBtr0076813	3	1	1	111	3L	7721847	7722347	GCAATGAGTCCAACTACTC		57	7721754	7721773	TAGTCAAACCTACAGTTGGA		57	NA	
Drosophila melanogaster	50	CG8605	FBgn0035762	FBtr0076838	2	1	1	80	3L	7317839	7317915	CTACAATCTCAGGCTGGAG		59	7317958	7317977	GCAATCTGTTCTATGTCCAC		58	NA	
Drosophila melanogaster	50	corn	FBgn0028383	FBtr0076923	1	1	1	98	3L	7138619	7138699	GAAATGGAGACGATTCCGA		59	7138539	7138557	CATGGTGTACCACATCCTC		59	NA	
Drosophila melanogaster	50	form3	FBgn0053556	FBtr0091533,FBtr0113469	2	2	2	242	3L	7112141	7112159	CAAGCGAAGTCTGAATGTG		59	7112364	7112444	AATTTGTAATTGGGCACCTC		58	NA	DesignRelaxed
Drosophila melanogaster	50	Lcp65Ag1	FBgn0020638	FBtr0077058	3	1	1	162	3L	6127994	6128013	CTACCAAGTCAACTACATCG		57	6127851	6127869	TCTCCTTGATAAGAACGGT		57	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG6610	FBgn0035675	FBtr0077048	2	1	1	60	3L	6069046	6069130	AATATCACAATGTTGGTGCC		58	6069152	6069171	GTTTACAAATGGAACCTTGC		57	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	Bj1	FBgn0002638	FBtr0077076,FBtr0077075,FBtr0077074	1	3	3	196	3L	5924798	5924816	ATTTGGTCATCCTGACCAC		59	5924561	5924579	GAATGTGCAGTAGTTGGTG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG7509	FBgn0035575	FBtr0073362	1	1	1	98	3L	4803910	4803985	CGGATAAGTCATATAGATGGCA		59	4803833	4803851	TAGATCAGCTGGAATGCTG		59	NA	
Drosophila melanogaster	50	CG13720	FBgn0035555	FBtr0073327	2	1	1	60	3L	4499090	4499110	GTACTTGATAAACTCAGAGGG		57	4499050	4499070	GGGTTTAGTTTGACTATCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	DopEcR	FBgn0035538	FBtr0100185,FBtr0100186,FBtr0073337	3	3	3	81	3L	4379470	4379488	TACTCAACCGATCAACTGG		58	4371891	4379425	CTAATTGTGCGCATCTGAG		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	Cpr64Aa	FBgn0035510	FBtr0073254	2	1	1	197	3L	4209067	4209085	AGAAACTGATCCTCGTCCT		59	4208561	4208907	CATCATGAACATCGTAGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rop	FBgn0004574	FBtr0073263	3	1	1	60	3L	4138506	4138525	GTCTGATACGAGACTTCGAG		59	4138465	4138483	AAGAAGACATGGGCATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14982	FBgn0035477	FBtr0073163	3	1	1	133	3L	3945593	3945668	TCAAGGAGAAATGGGAGGA		59	3945765	3945783	AGACATTCTCGTGATCCAC		59	NA	
Drosophila melanogaster	50	CG14965	FBgn0035414	FBtr0073109	2	1	1	60	3L	3192016	3192034	GGTGAGACACAGAATTTGG		58	3191974	3191994	CCTCTTCTGTCAACTCTACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32845	FBgn0052845	FBtr0072518	1	1	1	60	3L	272854	272874	CGAGGGATCTAATTCAATCAG		57	272814	272832	TCGGAGATCATATTTGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	snoRNA:Psi28S-2444	FBgn0082987	FBtr0113515	1	1	1	63	2R	15330668	15330686	CTGATGCTCAGTGAATGTG		58	15330713	15330731	ATGGAATGTAGCAAGTCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR33471	FBgn0053471	FBtr0088081	3	1	1	60	2R	7586959	7586978	TGAGAACAGTGTCTTCAGAG		58	7586918	7586938	CATAGACGAACATATCCATGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tal	FBgn0023477	FBtr0072141	2	1	1	257	2R	19828048	19828598	AGCCATCAACATCTATAAGCC		59	19828876	19828894	CTCTTCTTGGTGTCGAAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9815	FBgn0034861	FBtr0113111,FBtr0072024	2	2	2	191	2R	19309401	19309472	AGATTCCAATTTCGACGCT		59	19309228	19309246	AAGATTACGCCATCTCCTC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG30271	FBgn0050271	FBtr0113366,FBtr0071886	2	2	2	138	2R	18706959	18706977	CTGGATTCACGAGAAGGAC		59	18707079	18707155	GATGGCATTCATGACATGG		58	NA	
Drosophila melanogaster	50	CG3624	FBgn0034724	FBtr0071845	2	1	1	76	2R	18282173	18282191	AGATCAACAAGACCCTCAG		58	18282057	18282133	CAAATTGCTTCCCACATCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG4386	FBgn0034661	FBtr0071743	2	1	1	151	2R	17687667	17687686	CATCATCAAGTTGGATGAGC		58	17687470	17687554	CCTGAAGAGTATCGGAAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30389	FBgn0050389	FBtr0071633,FBtr0071632,FBtr0071634	2	3	3	85	2R	17037702	17037783	AAGTGGAACAAGAGTACCG		59	17037635	17037655	CGCATTTAATAGAATCTCGGG		58	NA	
Drosophila melanogaster	50	CG30447	FBgn0050447	FBtr0086338	3	1	1	60	2R	15834991	15835009	GGTAGTGCGGCTATTACTC		59	15835032	15835051	CAGAAGCAAGTATTCTGCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	endoB	FBgn0034433	FBtr0113097,FBtr0113098	1	2	4	81	2R	15196011	15196540	GTCTCCACAGTGATCTTCG		59	15195948	15195966	GACCCTTCAATAGACCCTG		59	NA	
Drosophila melanogaster	50	Pepck	FBgn0003067	FBtr0086701	3	1	2	113	2R	14424571	14424753	TTATCTCCGGCAATGTCTG		59	14424828	14424848	GCAAATCCACATTTCCATAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4984	FBgn0034267	FBtr0086862	3	1	1	80	2R	13619710	13619729	TAAGTACATCGACATGTTCC		57	13619770	13619859	CGGATATAGTCCAATAGTTCG		57	NA	
Drosophila melanogaster	50	CG4853	FBgn0034230	FBtr0086938	3	1	2	122	2R	13403022	13403097	GGTTTCTATCCTAAACACCCA		59	13403181	13403199	TTGATAAGCAGGTTGACCA		58	NA	
Drosophila melanogaster	50	CG10956	FBgn0034195	FBtr0110777	2	1	1	66	2R	13010636	13010715	GGCAATGGTAGTTTGACAC		59	13010588	13010606	AAGCAAATGGATGAGTAGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6984	FBgn0034191	FBtr0086979	3	1	1	181	2R	12979979	12980054	CAAGTTCTCTACTCCAGGG		58	12980199	12980217	TATCTAGTTCCTCTGCAGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ark	FBgn0024252	FBtr0086968,FBtr0086967	2	2	2	93	2R	12909214	12909232	CAGGATGTACATCGAGCAG		59	12909289	12909428	TAGCTTCAGATACGGTTGC		59	NA	
Drosophila melanogaster	50	CG30099	FBgn0050099	FBtr0087180	2	1	1	87	2R	12176038	12176056	ATCTTCAGATGAAGGCTGC		59	12175969	12175987	AGATCCTTCTTATCCCGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8386	FBgn0034061	FBtr0087264	3	1	1	119	2R	11894641	11894659	ATCACTTTAAGCCACTGTG		57	11894479	11894497	TGATTCCCTTCTCGATGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	fus	FBgn0023441	FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343	1	4	6	110	2R	11555363	11559507	CAACTGGACAGATCGTAGG		59	11555271	11555289	TGTTATTGGTGACACTCGA		58	NA	
Drosophila melanogaster	50	CG12862	FBgn0033950	FBtr0087483	2	1	2	67	2R	10528043	10528062	ATAGAGAAGGACAAGTGGAG		58	10527995	10528014	GACAGATTTATGCACTTGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6337	FBgn0033873	FBtr0087646	1	1	1	73	2R	9722349	9722489	GACTTTCAAACTTACGAGGAC		58	9722296	9722314	TAGTAGTTGGCGAAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4714	FBgn0033819	FBtr0087756	1	1	1	73	2R	9139867	9139885	AAGATTTCTTGTCCGTGCA		59	9139755	9139773	CTTCAGATCGGTATTGCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG33138	FBgn0053138	FBtr0087732	1	1	1	80	2R	9061160	9061178	TCAATTATCTGGGACTGGC		59	9061222	9061302	TTCCAGAAACATCCTCTGC		59	NA	
Drosophila melanogaster	50	CG12442	FBgn0033770	FBtr0087849	2	1	2	80	2R	8588060	8588139	GATGTATGAACTAAGTCTACTCCC		59	8588178	8588196	CTCAGCTCGTAGATCTCCT		59	NA	
Drosophila melanogaster	50	CG8878	FBgn0027504	FBtr0088018,FBtr0088017	2	2	2	91	2R	8034899	8034917	GATGAAGAGGAGAACCAGG		59	8034688	8034844	CTATCCGATTCATCCTCGC		59	NA	
Drosophila melanogaster	50	otk	FBgn0004839	FBtr0088028	2	1	1	97	2R	7890222	7890301	CTTCACCCATAGGGATCTG		58	7890143	7890161	GGCTATACTTGTCCTTGCA		59	NA	
Drosophila melanogaster	50	S2P	FBgn0033656	FBtr0088063	3	1	1	117	2R	7730980	7730999	GGATACTACATCACAACCCT		58	7730815	7730903	GGCAGAAGATGAACTTTATTCC		59	NA	
Drosophila melanogaster	50	CG9003	FBgn0033639	FBtr0113067,FBtr0113068,FBtr0088088,FBtr0113069	3	4	4	108	2R	7531917	7532003	GATCAGTCCGTGAGAACTC		59	7531827	7531845	AATACCTGCTGATGGACTG		59	NA	
Drosophila melanogaster	50	CG33472	FBgn0053472	FBtr0114575,FBtr0089862	2	2	2	85	2R	7332256	7333648	GTATTAACAGCCGTTATCGGA		59	7334661	7334679	TAGCAGTAAATCGATCGCG		59	NA	
Drosophila melanogaster	50	CG9062	FBgn0033607	FBtr0088181	2	1	1	85	2R	7169522	7169540	CACCAAACGAAATGGAACC		59	7169386	7169475	ACCCACTTCACTAAAGATGAC		59	NA	
Drosophila melanogaster	50	CG30000	FBgn0050000	FBtr0088463	2	1	1	114	2R	5493874	5493958	GTCTCCATAGTGCGATATCTC		59	5494034	5494052	CATTGAAATGCTGCCACTC		59	NA	
Drosophila melanogaster	50	CG1888	FBgn0033421	FBtr0088547	2	1	1	188	2R	5434388	5434406	GAATCCGTGTACATCATCG		58	5433789	5434237	TTAATGGCTTCATCTTGCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	babo	FBgn0011300	FBtr0088658,FBtr0088659	3	2	2	119	2R	4847705	4847786	AGGAGATGAAGAAGGTGGT		59	4847869	4847887	GATTGGGATACCAGCACTC		59	NA	
Drosophila melanogaster	50	CG14744	FBgn0033324	FBtr0113056	2	1	1	113	2R	4595305	4595323	ACTTCAGCATCTCCATGTG		59	4595141	4595231	TGAGGATAATAAACAGGTGGTG		59	NA	
Drosophila melanogaster	50	CG14749	FBgn0033316	FBtr0088695	2	1	1	60	2R	4516641	4516659	TACTTCTGTTCACCCAGAC		58	4516683	4516701	GGACTGATACAGTGCTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34217	FBgn0085246	FBtr0112410	2	1	1	60	2R	4116083	4116101	AAGTGTTACTAACTGTGGC		57	4116041	4116060	CCATCTTCAGAACTAGATGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cul-4	FBgn0033260	FBtr0088821	2	1	1	93	2R	3992258	3992276	TCCCGAGTACTTACAACAC		58	3992132	3992201	AATCAGTGGATGTTTGGTG		57	NA	
Drosophila melanogaster	50	Eb1	FBgn0027066	FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130	2	5	5	160	2R	2642342	2642416	CAAATCAGGTGATGGATATGC		59	2642600	2642619	AGTCGCATATAAGATGTCCA		58	NA	
Drosophila melanogaster	50	CG7845	FBgn0033059	FBtr0086023	2	1	1	63	2R	1962596	1962615	GTGGACAATGAATACGAGGA		59	1962489	1962570	ACTCATTATCGCTGTCACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17683	FBgn0040002	FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300,FBtr0111302	2	5	5	67	2R	19480	19555	TTCAGTTGAGGTGGAACAG		59	19585	19604	AATCAAGGAGATCGTACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6675	FBgn0032973	FBtr0085936	3	1	1	60	2L	22109108	22109126	TACTAATAATGCGGACGCA		58	22109150	22109229	GGTATGCCTATTGTAGCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31703	FBgn0051703	FBtr0085946,FBtr0111227	1	2	2	101	2L	22103103	22103121	CTTCAGCTATGGTCAACGA		59	22103020	22103040	AATGGAGATCTTTCTCTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tsh	FBgn0003866	FBtr0085907,FBtr0085906	1	2	2	68	2L	21836641	21836835	GGATAGAAATCAGAAAGCGC		59	21836866	21836884	TTCAATCTCCGATCAGCAG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	step	FBgn0086779	FBtr0110946,FBtr0085910	1	2	2	80	2L	21742827	21742845	ATGAGGATGTGCTTAAGGC		59	21742688	21742783	ACAGAAATTGTCTGAGGGC		59	NA	
Drosophila melanogaster	50	CG31676	FBgn0051676	FBtr0081424	3	1	1	155	2L	20848779	20848797	AATGAGCCAAAGGATCTGG		59	20848916	20848934	TGTTCGTCTGTGATTTGTG		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	spir	FBgn0003475	FBtr0081355,FBtr0081353,FBtr0081354,FBtr0081352	1	4	4	94	2L	20343658	20343746	TTCTCCAAGTTTCAGGACG		59	20343804	20343822	AAATGTGGATGATGCTGGT		59	NA	
Drosophila melanogaster	50	CG13282	FBgn0032612	FBtr0080929	1	1	1	110	2L	16832789	16832865	AATTCCTTTGCTTGCAGTC		58	16832697	16832716	CAGGAGGTAGGATATGTAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG15260	FBgn0028850	FBtr0080745	1	1	1	61	2L	15292103	15292121	ACCGGAATGAGTATCACAC		59	15292060	15292079	GTTATCACCCACTTGTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	TfIIS	FBgn0010422	FBtr0080722	3	1	1	63	2L	15059536	15059554	CGATGAACCTATGACCACC		59	15059491	15059509	TTAGCAGAACTTCCATCGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7532	FBgn0028915	FBtr0080640	2	1	1	240	2L	14349492	14349510	TTCCTTGGCTTCATGATCC		59	14349270	14349288	AGTAAACGAATCCGGTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32971	FBgn0052971	FBtr0114463	3	1	3	184	2L	14274925	14277315	TCTTGACCAATCTCAGTGG		58	14277524	14277542	GACGTTATCCTTTAGCTGC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG6180	FBgn0032453	FBtr0080398	2	1	1	65	2L	12708023	12708041	GTAGTTCCGGATGTGATCG		59	12708070	12708088	AATATCGCCGGGATATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	vir-1	FBgn0043841	FBtr0100125,FBtr0080390,FBtr0080389	3	3	4	60	2L	12403985	12404005	TCAGACATGAGGAAGATTTGG		59	12403945	12403964	TCTTTCCTCTCCAAGTACTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12517	FBgn0032311	FBtr0080144	1	1	1	61	2L	10870277	10870295	TCATCTGTATCGAACGCTC		59	10870320	10870338	ATTATCCGTCCAGGATTCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	UbcD2	FBgn0015320	FBtr0080115	1	1	2	89	2L	10766456	10766474	TACTCAAGGACAACTGGTC		58	10766270	10766403	GATCGGCTGGATTACAGTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG17105	FBgn0032280	FBtr0080106	1	1	1	229	2L	10681104	10681122	TATCCTGGTATACACGGTG		57	10681315	10681333	TAACCAACTGAGTTTGCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Klp31E	FBgn0032243	FBtr0080018	3	1	1	81	2L	10416873	10416956	GCGAATATGACTACATCTGTG		58	10416996	10417017	GGCTTATCTTGCTTTCATAGTC		59	NA	
Drosophila melanogaster	50	Bsg	FBgn0011219	FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567,FBtr0079574	3	9	9	95	2L	8107088	8107106	TTCAAATACAGCCGTTGTG		58	8107165	8107247	GTTACATTGGCAAAGGTCC		59	NA	
Drosophila melanogaster	50	CG8902	FBgn0031886	FBtr0079424	3	1	1	178	2L	7065112	7065130	TCTGGAACTCATTGAGCAG		59	7064895	7064913	GATGTTCATTCGTCACCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	nrv2	FBgn0015777	FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382	1	5	5	84	2L	6791573	6791591	TTTGATCTGGTACAAGGGC		59	6791313	6791525	TACTTTGTACACCGCAAGG		59	NA	
Drosophila melanogaster	50	Sec61alpha	FBgn0086357	FBtr0079266	2	1	1	71	2L	6480071	6480091	GGAAGTTATCAAACCGTTCTG		59	6479049	6480038	TCCCTGAATTGGATCTTGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Gpdh	FBgn0001128	FBtr0079147,FBtr0079148,FBtr0079146	2	3	3	106	2L	5947158	5947244	GGTCTGGAGGACAAATTCC		59	5947314	5947332	ATATGCTCAGGGTGATTGC		59	NA	
Drosophila melanogaster	50	mRpL27	FBgn0053002	FBtr0077451	2	1	1	269	2L	4459374	4459393	GTACGAGGAATAAGAAGGGC		59	4459066	4459084	TCTTGTAGATGTTCTGGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG2975	FBgn0031468	FBtr0077619	2	1	1	97	2L	2842009	2842027	GTCGCTTCATTCCTTTCTC		58	2842088	2842168	GTCACTGGAGTTATCTGGG		59	NA	
Drosophila melanogaster	50	CG4271	FBgn0031409	FBtr0077756	1	1	1	60	2L	2285201	2285220	ATCTTATTTGCACGAAGCTC		58	2285243	2285261	AGAAGTCAAACTTTGCCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cdlc2	FBgn0026141	FBtr0077925,FBtr0077924	2	2	2	61	2L	1344751	1344770	TTCGACAAGAAGTACAACCC		59	1344794	1344812	ACATAGGATCCGAAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pkg21D	FBgn0000442	FBtr0078042	2	1	1	108	2L	788168	788250	GGATTTCAGTGATAAGCAGC		58	788079	788100	CTTGGAGTACATTGAATCTACC		58	NA	
Drosophila melanogaster	50	CG2794	FBgn0031265	FBtr0078067	1	1	1	60	2L	565753	565771	AGATATGTTCATAGCCGGT		57	565793	565813	GCGTATGTTCTTGGTTAACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Spp	FBgn0031260	FBtr0078080	1	1	1	159	2L	543548	543566	TGATTGCCTACTTCCTTGG		59	543341	543425	TCTTCATAGGCAAAGAGCA		58	NA	
Drosophila melanogaster	50	CG4213	FBgn0031251	FBtr0078093	3	1	1	145	2L	398862	399864	CCTACATCAAACTAAAGGACCT		59	398738	398756	TTTGGTTAGCTCCAAGCTC		59	NA	
Drosophila melanogaster	50	CG13693	FBgn0031235	FBtr0078126	3	1	1	246	2L	233136	233217	GCGGATATTGAAAGAAATGC		57	233423	233444	TGGTTAACTTCATAGTTCCCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Mst84Dd	FBgn0004175	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-A2589b	FBgn0086024	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG12565	FBgn0031180	FBtr0077214,FBtr0077215	2	2	2	103	X	21313521	21313539	GGATTAGGAACGGGAACTG		59	21312769	21313456	GAAACGGTAAGATCAATGCAG		59	NA	
Drosophila melanogaster	50	l(1)G0004	FBgn0027334	FBtr0077298	2	1	1	85	X	20263097	20263115	AAATTCACCATCGAGAACG		58	20263164	20263182	TGAATGTTCTGGTAGCTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	OdsH	FBgn0026058	FBtr0074461	3	1	1	170	X	17705779	17705799	AATGATTGTACAGAGTCCTCG		59	17705931	17707351	GAACCAAACCGCTATACGA		59	NA	
Drosophila melanogaster	50	CG10597	FBgn0030832	FBtr0074398	2	1	1	61	X	17125009	17125028	AAGGTAAGAAATCGAGGAGC		59	17124967	17124987	GAAGGATATCGTTAACGAGAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9699	FBgn0030772	FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369	3	6	7	84	X	16588098	16588116	CATTGAGGCGGTTAAATGC		59	16580759	16580777	AAAGCCTATGTAATCGCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8916	FBgn0030707	FBtr0074126	2	1	1	82	X	15818119	15818138	GGTTTCGCTACAGAATTCAC		59	15818181	15818259	ACGATGGATCGTTATATGTGG		59	NA	
Drosophila melanogaster	50	Myb	FBgn0002914	FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169	1	4	5	82	X	15749875	15749893	GGTCTATAATCGCGTTGGA		59	15749747	15749829	GTCCAAGTTGACTCTTGTG		58	NA	
Drosophila melanogaster	50	Tango10	FBgn0030330	FBtr0073553,FBtr0073552	2	2	2	62	X	11616426	11616570	AGAGGAGCGATTTAAGATCG		59	11616595	11616613	CGGATGTGCATAATCTGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG2446	FBgn0030328	FBtr0073615,FBtr0073618,FBtr0073619	1	3	5	80	X	11607718	11607802	GCAGGAGACTAAACACCAG		59	11607656	11607677	CTCCTTATCGTGGTATCTATCG		59	NA	InUTR
Drosophila melanogaster	50	mxc	FBgn0005639	FBtr0071312	2	1	1	60	X	9139429	9139447	ATTTAAGGCTGAAATGCGC		59	9139471	9139489	GTCGCCCTCCTTAATATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Moe	FBgn0011661	FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274	1	10	10	163	X	8768353	8768371	GATGAGAACGAGAACGAGG		59	8768131	8768227	TCTTGTTTCAGAGCCTTGAG		59	NA	
Drosophila melanogaster	50	swa	FBgn0003655	FBtr0070922	1	1	1	262	X	6258369	6258387	ATCTTTGGACTTTAGCAGC		57	6258037	6258055	CAAAGTAGTACATGCCCTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	rux	FBgn0003302	FBtr0070889	3	1	1	60	X	5930602	5930620	CTCCCTGAAGTATGTGGAG		58	5930560	5930580	GCCGTAGATATGTTCATTACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rala	FBgn0015286	FBtr0070584,FBtr0070583,FBtr0070582	1	3	3	95	X	3603936	3603954	GATAACTACTTTCGCAGCG		58	3602942	3603880	GATTTGTTCTCTGAATTCCTGG		59	NA	
Drosophila melanogaster	50	CG17707	FBgn0025835	FBtr0112918	3	1	1	87	X	42505	42590	AGTCTAAATCGATCGATGCT		58	42437	42458	CAAGGGACAAGATAGATTTGAC		58	NA	
Drosophila melanogaster	50	eIF4G	FBgn0023213	FBtr0089243,FBtr0112904	2	2	2	85	4	941816	945718	CCTATCACTGATGAAACGGA		59	941750	941768	GGATGGGTCTGATTAGGTG		59	NA	
Drosophila melanogaster	50	gro	FBgn0001139	FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963	3	5	5	104	3R	21870081	21870172	CGCCATTATGTTATGTACTACG		59	21870236	21870255	AAGTAGCTGGTTGATCAGTG		59	NA	
Drosophila melanogaster	50	spas	FBgn0039141	FBtr0084533,FBtr0084534	1	2	2	68	3R	19866502	19866520	AATGGTCATTCTACCCTCC		58	19866610	19866628	AATAAACCCTTAGCCGGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	tsl	FBgn0003867	FBtr0084164,FBtr0084165	1	2	2	80	3R	17604914	17605282	ATCTATAGGAATCTGAGTGGC		58	17604854	17604872	CTCCATGTGAAAGTCTCCA		58	NA	
Drosophila melanogaster	50	CG15499	FBgn0038891	FBtr0084124	2	1	1	183	3R	17357748	17357766	ACATTGATGAAGGTGTGGA		58	17357357	17357378	CCAGACAATTATGGATTAGAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31206	FBgn0051206	FBtr0083875	3	1	1	93	3R	15933212	15933302	TATGCTCATAATGTGCAGG		57	15933137	15933156	ATGTATCCTGAATAGGTGGT		57	NA	
Drosophila melanogaster	50	CG14300	FBgn0038643	FBtr0100288	2	1	1	109	3R	14519197	14519215	ACCTATACGCATCACTTCG		59	14519106	14519124	TTGAGCAGATGCATGTAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31251	FBgn0051251	FBtr0083484	2	1	1	158	3R	13510001	13510019	CATTTCAATTCAGGCCCAG		59	13509802	13509879	AGCTCCTTTGCTTTATCGT		59	NA	Nonspecific
Drosophila melanogaster	50	CG14894	FBgn0038428	FBtr0083314	1	1	1	60	3R	12268267	12268285	GAAGCCTTAGACATTTGCC		58	12268225	12268243	TGTTTCCGTAGAGAACTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cad88C	FBgn0038247	FBtr0082965	3	1	1	82	3R	10465251	10465357	TTCACGAGATACGTATAGAAGC		59	10465397	10465418	CCGAACATAAATCGTTAGATCC		59	NA	
Drosophila melanogaster	50	rin	FBgn0015778	FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082796	1	4	5	60	3R	9476209	9476538	CAACAAGGGTGACTTTGAG		58	9476561	9476580	CTGATTATCACCGAACTGCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Rbp1	FBgn0010252	FBtr0082278,FBtr0082277,FBtr0082276,FBtr0082275	3	4	4	76	3R	6610338	6610356	TATAGGGAGTGGGACTTGG		59	6610396	6610414	CCTTCTATCTCGTGCTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14691	FBgn0037829	FBtr0082314	3	1	2	86	3R	6579571	6579763	ACATACTGAAGGTGTTCCT		57	6579503	6579521	AAACCATCATCGTTACCAG		57	NA	
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210	2	5	8	81	3R	5834566	5835033	CTACGAAGGTTCAAACCGA		59	5834503	5834521	GAGTCGGTGGATATCTCAG		58	NA	
Drosophila melanogaster	50	CG33654	FBgn0053654	FBtr0091633	1	1	1	75	3R	5408713	5408733	GGAGCTATAAGTACTTAACGC		58	5408566	5408584	AACATGAAGGGTCTGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG9396	FBgn0037714	FBtr0082111	2	1	1	85	3R	5397004	5397022	ATGGACTTATCAAGGCCTG		59	5396879	5396956	GAATATGGTCTTGGGTCCTG		59	NA	
Drosophila melanogaster	50	Hrp59	FBgn0037701	FBtr0082123	3	1	1	91	3R	5333096	5334020	TTGCTAATCTGGACTACAAGG		59	5333025	5333043	GTCCAGTGAAAGGTCTACG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Or85c	FBgn0037591	FBtr0081899	2	1	1	88	3R	4337630	4337648	TATAGCTCGACCTCAGAGG		59	4337500	4337579	ATACTTGAAGAAGGTCCGTC		59	NA	
Drosophila melanogaster	50	CG17816	FBgn0037525	FBtr0113203	2	1	3	153	3R	3691470	3693768	GAAAGAAGCTACTCTACATGAG		58	3691068	3691086	CGTGATGAAGTGGTTTAGG		58	NA	
Drosophila melanogaster	50	CG17917	FBgn0037431	FBtr0081709	2	1	1	67	3R	2167823	2167842	ATGTAATACACATCGGACCG		59	2168072	2168090	ACAATGTGCTGCTAAATGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2911	FBgn0037350	FBtr0113194,FBtr0078740	1	2	2	62	3R	1448390	1448408	GCCCGACTTCTATGAACTC		59	1448346	1448364	CTGCACTTGATCTCATCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	slif	FBgn0037203	FBtr0078555,FBtr0078556,FBtr0078557	1	3	3	82	3L	22885585	22885671	AATCTTTGCGTCCATAATGG		58	22885716	22885734	TGTATGCTAACAGGGTTCC		58	NA	
Drosophila melanogaster	50	Las	FBgn0029158	FBtr0078228	3	1	2	105	3L	20424482	20424557	GATCGAGATGATTTGCCAG		58	20424340	20424358	AATCAGGTACTAGGCACTC		58	NA	
Drosophila melanogaster	50	CG12310	FBgn0036467	FBtr0075665	3	1	1	61	3L	15043732	15043750	ATTCGACTAGCAATGATGC		57	15043689	15043708	ATCATCAGAAGATTCCTCCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32105	FBgn0052105	FBtr0075953	3	1	1	156	3L	12328103	12328122	AGATAGCTCCGGTTATTTGG		59	12328315	12328333	CAACTGGTCAAAGTTGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mnf	FBgn0036134	FBtr0076225	2	1	5	108	3L	11109260	11109278	TGGCAGAATTCCATACGTC		59	11108904	11109000	GCGAATTATCCATGTGACTG		59	NA	
Drosophila melanogaster	50	CG16711	FBgn0036032	FBtr0076397,FBtr0076396	3	2	2	60	3L	9699317	9699338	ACTAAGAATCTGAAGGATCTGC		59	9699358	9699377	CACTGCTACAATTCTGTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33171	FBgn0053171	FBtr0089838	3	1	2	185	3L	7042020	7042038	AAGAATCTGCTCAACAGTC		57	7043787	7044351	ATTCTGTACCCTGGATGAG		58	NA	
Drosophila melanogaster	50	Prat2	FBgn0041194	FBtr0076946,FBtr0076945	3	2	2	60	3L	6905422	6905440	ATATCCCTGCTACATGGGT		59	6905380	6905401	CAATTTGTTGGCTATTAGCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF4E-4	FBgn0035709	FBtr0076963	3	1	1	132	3L	6658271	6658289	TCTTTGTTCAAGAAGGGCA		59	6658025	6658126	GTATGAGTAGCACATCTAACCA		59	NA	
Drosophila melanogaster	50	CG8398	FBgn0035708	FBtr0076980,FBtr0076979,FBtr0076981,FBtr0076978	1	4	4	92	3L	6609616	6609634	AAGCACTTCATTCCCTACC		59	6609687	6609778	GCAGTAGATTATCAGATCTGGA		58	NA	
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713	2	5	8	95	3L	5692112	5697030	GTTCCTTCGCAAGATTTCG		59	5697088	5697107	TTATATGGTGACGCCATGAC		59	NA	
Drosophila melanogaster	50	CG9149	FBgn0035203	FBtr0072667	1	1	1	60	3L	1303941	1303959	CGAGGGTATACAGAAGCTC		58	1304043	1304061	ATTGCCAGCGGTTATAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pk61C	FBgn0020386	FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466	2	8	8	87	3L	142804	142822	ATATCGCGACTGCTTAGTG		59	142873	142954	GGTCGAAAGAGTTCTTTGC		59	NA	
Drosophila melanogaster	50	Orc4	FBgn0023181	FBtr0072425	1	1	1	65	2R	20683710	20683728	TCTCAGTCCTAGAGCTGTG		59	20683663	20683681	AATCGCGATCGTAAATCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3860	FBgn0034951	FBtr0072201	1	1	1	80	2R	19881986	19882066	CATGTGGAAAGAACTGAGC		58	19881924	19881943	GATGCAGTTCTTCAGAATGG		58	NA	
Drosophila melanogaster	50	betaTub56D	FBgn0003887	FBtr0086536,FBtr0086538,FBtr0086539,FBtr0086537	3	4	4	68	2R	15335672	15335691	TCTCTACGATATCTGCTTCC		58	15335623	15335641	ACAAGATGGTTCAGGTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Vha100-3	FBgn0028669	FBtr0086602	2	1	1	60	2R	14798420	14798438	TTAACATCTACGACTGCCC		59	14798378	14798398	CTCAGCTCCTTAACCTTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ote	FBgn0003022	FBtr0086768	2	1	1	60	2R	14164017	14164038	CGAGAGGAGAATTATCTTAAGG		57	14163978	14163996	CCTCTTCTTCATCGGACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eIF3-S9	FBgn0034237	FBtr0086941	3	1	2	84	2R	13424075	13424209	AGTGATGAAGATCTGCTGG		59	13424257	13424275	TATTGTCCACTACCACCAC		58	NA	
Drosophila melanogaster	50	CG8060	FBgn0034113	FBtr0087178	1	1	1	80	2R	12206972	12207037	CCACATTGATCAAGCTTCC		58	12206910	12206929	CCTCGTTGTAAATTACCGTG		58	NA	
Drosophila melanogaster	50	CG30084	FBgn0083919	FBtr0100387	1	1	6	197	2R	11664700	11664718	TACTCCAATGGAAACTCCA		57	11660748	11661328	TACATTACGACCTTGTTGG		57	NA	
Drosophila melanogaster	50	Asx	FBgn0000142	FBtr0100154,FBtr0087493	2	2	2	81	2R	10395745	10395763	GCATATCCAGGATGTCGTC		59	10395808	10395899	CTGGCCGATATCATTTCCA		59	NA	
Drosophila melanogaster	50	CG17385	FBgn0033934	FBtr0087517	1	1	1	250	2R	10298415	10298435	CTGGTTAACCTCAAGAAACAC		59	10297879	10297897	AAGGTATCAAAGATGGCCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8862	FBgn0033690	FBtr0088012	1	1	1	60	2R	8065778	8065798	GAGAACAATGTAAGCTTGACG		59	8065738	8065759	ATCCATACTTCATGATCTGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8298	FBgn0033673	FBtr0088043	2	1	2	148	2R	7876824	7876898	CGCTTTCTGATATACTCAACG		58	7877008	7877082	TTATAGGCGGTCTCTATGC		58	NA	
Drosophila melanogaster	50	CG8234	FBgn0033644	FBtr0088076,FBtr0088075	3	2	2	91	2R	7564735	7564753	TCTTTCCACGATCATCGTG		59	7564807	7564882	ACAGAAGAATCTTTCTGCCC		59	NA	
Drosophila melanogaster	50	CG13211	FBgn0033613	FBtr0088173	3	1	2	71	2R	7182394	7182412	CTCCAGTTCCATAGTGTCG		59	7182269	7182288	TACAGCTTGTAGCCAAAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1773	FBgn0033439	FBtr0088467	2	1	1	89	2R	5594446	5594539	CTTTAAAGATCACATACGACCC		58	5594589	5594607	ACAGCCATGTAGGATTGTC		59	NA	
Drosophila melanogaster	50	Aldh-III	FBgn0010548	FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995	1	9	9	157	2R	3355133	3355208	AGAAGTTGTCATCAGCTCG		59	3354994	3355012	GTAGTAGTTGGTCAGCACC		59	NA	Nonspecific
Drosophila melanogaster	50	Tsp42Eb	FBgn0042086	FBtr0086177,FBtr0086176	2	2	2	67	2R	2887137	2887155	CAATACGGACCTGATTCGA		59	2887186	2887204	ACATGATGAAGATGCCCAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp42Ea	FBgn0029508	FBtr0086172,FBtr0086171,FBtr0086173	1	3	3	101	2R	2890569	2890588	GTAACGATGATCATCCTGGG		59	2890652	2890733	GATCGAGTACGTCATGGAC		59	NA	
Drosophila melanogaster	50	UbcD2	FBgn0015320	FBtr0080116,FBtr0080115	2	2	2	127	2L	10766392	10766410	GCTCACAGACTGTAATCCA		58	10766108	10766126	AACTTACGCATCATGTTGC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG5676	FBgn0032200	FBtr0080086	3	1	1	80	2L	10255129	10255147	TAAGAGCGTGGATAAGCTC		58	10255004	10255088	TATCTTTCGGTCTTATCCTTCC		59	NA	
Drosophila melanogaster	50	CG4592	FBgn0032162	FBtr0079879	2	1	1	84	2L	9922136	9922154	TTATTCTGGACTCGGTTCC		58	9922202	9922275	GTGAGTGTCCATTGATTGC		59	NA	
Drosophila melanogaster	50	CG4036	FBgn0032149	FBtr0079870	3	1	1	60	2L	9791082	9791100	CATGGTCCTACTGTATCCA		57	9791124	9791142	TGGACATGATTGGTATCCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Snoo	FBgn0085450	FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718,FBtr0112720	2	5	5	60	2L	7975303	7975321	GCACGACTATCTTCATGTG		58	7975261	7975282	GAGGATGATCTGGTATTTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LanB1	FBgn0002527	FBtr0079491,FBtr0079490	1	2	2	60	2L	7817640	7817737	CCTGTATAGATTGTCAGGACTC		59	7817755	7817776	TATCCATCTAAACAGCTGTCAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG3430	FBgn0031875	FBtr0079350	2	1	1	92	2L	6958533	6958554	GACTACCAAGCAAATATTCCAG		59	6958671	6958691	CTTAGAATCGGCATTAATGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG31644	FBgn0051644	FBtr0079159	1	1	1	60	2L	5818140	5818158	TACTCCACTTACGATCCCA		59	5818098	5818117	ACGATAGGTATCCTCCACTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3714	FBgn0031589	FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077482,FBtr0077479	1	5	6	114	2L	4190819	4192645	AGAAGTCATTCAGGAGTGG		58	4190723	4190741	GAAAGATAGGCCAGATCCC		59	NA	
Drosophila melanogaster	50	CG3609	FBgn0031418	FBtr0077791	1	1	1	122	2L	2372924	2372942	ATGTTAGTGCCACCTTGAC		59	2372761	2372840	AGTCAATCAGGGTAACTTGTC		59	NA	
Drosophila melanogaster	50	CG6847	FBgn0030884	FBtr0074505	2	1	1	105	X	17816100	17816119	TCAACTCCTTCAACGATCTG		59	17816185	17816264	TCGTCTTTCTCGGATATTTCG		59	NA	
Drosophila melanogaster	50	CG9699	FBgn0030772	FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369	2	6	7	80	X	16588098	16588116	CATTGAGGCGGTTAAATGC		59	16580763	16580781	CCTATGTAATCGCGATCCT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG9400	FBgn0030562	FBtr0073920,FBtr0112982	1	2	2	60	X	14183082	14183100	TTGGACATGCACAATTTGG		59	14183040	14183061	TTCTATAGCCATCCAGATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1444	FBgn0029975	FBtr0071091	1	1	1	80	X	7804810	7804898	GGAGATAGGCGATAAATACGG		59	7804937	7804958	ATCTTATCGTAGATCTCGTCAC		59	NA	
Drosophila melanogaster	50	mei-9	FBgn0002707	FBtr0070656	1	1	1	100	X	4210923	4211004	TTAATGATCTCCACCATGTACC		59	4210844	4210862	AAAGTCCATCCTGAGTTGC		59	NA	
Drosophila melanogaster	50	CG15578	FBgn0040905	FBtr0070659	1	1	1	60	X	4171820	4171840	AGTCCATTATAATGGTCCTGG		58	4171780	4171798	ATGTTCAGCTCTGTGTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Gr2a	FBgn0027796	FBtr0114515	3	1	1	98	X	1347989	1348056	TCTCTATACGATCGTGGGA		58	1348118	1348136	TACTGTCCGTTGGAATCAC		59	NA	
Drosophila melanogaster	50	CG2241	FBgn0039788	FBtr0085680	2	1	1	77	3R	26409039	26409112	AACTCAACCTCAAGGTTCG		59	26408980	26408998	CAACCTCCGCAATATAGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4963	FBgn0039561	FBtr0085266	1	1	1	82	3R	23770726	23770806	CAACTACGTGATTTCGGGA		59	23770662	23770680	GCATACGCTGTTTGATCAC		59	NA	
Drosophila melanogaster	50	CG6330	FBgn0039464	FBtr0085084,FBtr0085085	3	2	2	109	3R	22776723	22776805	TCCCATGAGTTTACCATTCTC		59	22776634	22776652	GTATCGTACGGATCATCGG		59	NA	
Drosophila melanogaster	50	bai	FBgn0045866	FBtr0084758	1	1	1	204	3R	20865337	20865426	ATCATCGACTACATTGCAC		57	20865658	20865676	CTTCGTAGCTCTTGGTCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gr93b	FBgn0045470	FBtr0084160	1	1	1	60	3R	17668955	17668976	GGTTCCTGTTAACTTTAGTGTG		59	17668916	17668934	TGTGTTATCATTCCCGTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	eRF1	FBgn0036974	FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177	2	6	6	81	3L	20344340	20344433	AATTTCTCAGGATACTGGCA		58	20344477	20344495	GAGAGTCTCTACAGAGCCA		59	NA	
Drosophila melanogaster	50	CG32228	FBgn0052228	FBtr0074836	2	1	1	60	3L	20261560	20261580	CTTTACACTCTGGAAAGTAGG		57	20261600	20261620	GGAAACTAGACATACTACTCG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PDCD-5	FBgn0036580	FBtr0075483	2	1	1	180	3L	16224506	16224581	GGCACGACTTAATACCCTC		59	16224344	16224362	ATCGTATTTCACGGAGGAC		59	NA	
Drosophila melanogaster	50	CG6776	FBgn0035904	FBtr0076622	3	1	1	77	3L	8512063	8512612	GGTAAACATTTGGCCAAAGG		59	8512652	8512670	GAACCTCATGGAGTACAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8562	FBgn0035779	FBtr0076854	1	1	1	69	3L	7392425	7392443	CTCCTACGGCAACTATCTG		59	7392536	7392554	CAGATCCTCCCAATTCTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8549	FBgn0035714	FBtr0076943	3	1	1	60	3L	6746716	6746734	TCCGTTAAGATGAACAGGA		57	6746758	6746776	CCTTGAGAATCTTGATGGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34454	FBgn0085483	FBtr0112760	2	1	1	88	3L	232022	232040	AATACAATCCCATTTGCGG		58	231885	231970	TTGAATGTCAGCTCCACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	usnp	FBgn0034913	FBtr0072236	3	1	1	66	2R	19731735	19731753	ATCACATCAGTTGGACGAG		59	19731687	19731705	CTTCAGACCAGTCAGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	rad50	FBgn0034728	FBtr0071829	2	1	1	185	2R	18311932	18312052	GGAAATTGGCAAAGTGCTC		59	18312198	18312219	CCCTTTGCTTAGTTAGATTCAC		59	NA	
Drosophila melanogaster	50	lolal	FBgn0022238	FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778	3	4	4	123	2R	14042986	14043404	TCACAGATGTAACACTCGC		59	14042819	14042838	ATAATGATCGGATGCTTCGA		59	NA	
Drosophila melanogaster	50	CG33007	FBgn0053007	FBtr0087778	1	1	1	60	2R	9034172	9034190	AGCATCGATTATCACAGCA		59	9034130	9034149	GCTATCACTAGATCTTCGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14762	FBgn0033250	FBtr0088867	1	1	1	112	2R	3899227	3899245	TGCCAATGTGTTTAGTCAC		58	3899072	3899151	GATATTGCAGGTTCTCCTC		57	NA	
Drosophila melanogaster	50	CG30380	FBgn0050380	FBtr0088881	3	1	1	189	2R	3826957	3826977	TCCCAATGATCCTAAGATAGC		58	3826788	3826806	GAACCTATAGCCATAGGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tsp42Ed	FBgn0029507	FBtr0086181	2	1	1	170	2R	2898305	2898323	ATGGTGTCCACCATAAAGG		59	2898084	2898171	CATGACCACAGAGTACGAG		59	NA	
Drosophila melanogaster	50	Cyp6u1	FBgn0033121	FBtr0086185	3	1	1	122	2R	2860229	2860305	CAAGTCCTCAATGAAACGC		59	2860125	2860143	TATCAGCACATTGTTGCCT		59	NA	
Drosophila melanogaster	50	TpnC4	FBgn0033027	FBtr0086075	3	1	1	83	2R	1394209	1394279	GGAACAATTGAGAATCCTTAGG		58	1394147	1394168	CTAGATACATCAGCATGTTCGA		59	NA	
Drosophila melanogaster	50	Bka	FBgn0010520	FBtr0079874	2	1	1	60	2L	9895479	9895497	TAATGCACAGCTTAAACGC		59	9895520	9895539	TCGAATCTGATCCTTAAGCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rca1	FBgn0017551	FBtr0079342	2	1	1	115	2L	6853335	6853353	CTATTGGACGTACAACCAG		57	6853432	6853450	GAAGTTATATGGCGGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4291	FBgn0031287	FBtr0078034	3	1	1	120	2L	851656	851732	AACTGTGGAAGTGAAAGCA		59	851554	851572	GAACTTCTTGACTGGAGGT		58	NA	
Drosophila melanogaster	50	CG11377	FBgn0031217	FBtr0078104	1	1	1	99	2L	103427	103527	GTGTCATGATATTTCTGCGG		59	103589	103607	CTGGAAGATGACACAGGTG		59	NA	
Drosophila melanogaster	50	snoRNA:291	FBgn0065070	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	mir-276a	FBgn0067718	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	tRNA:E4:62Ac	FBgn0011853	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG32500	FBgn0052500	FBtr0077374	1	1	2	195	X	21494389	21494407	GGAGAGCTTGAAGTTCCTG		59	21493145	21493163	CTTAATCAGGCTCCACTCG		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG14476	FBgn0027588	FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058	3	5	5	96	X	21473853	21474022	AATCTATGGTCATGGAGCG		59	21473775	21473793	TACAACATTGGTCTCCGAC		59	NA	
Drosophila melanogaster	50	CG11710	FBgn0031115	FBtr0089643,FBtr0089642	2	2	2	118	X	20298918	20298936	GTACCGAGAGCTATATCCC		58	20298758	20298836	GCAGCTCGTATATCTTGTG		58	NA	
Drosophila melanogaster	50	Sh	FBgn0003380	FBtr0089658,FBtr0089660,FBtr0089662	3	3	7	103	X	17824694	17824712	AATTACTTCTATCACCGCG		57	17824461	17824627	AAATGTTGACCTAGTGCAC		57	NA	
Drosophila melanogaster	50	CG18258	FBgn0030827	FBtr0074392	1	1	1	60	X	17106894	17106915	GAGTGATGATTGTCAGAATACC		58	17106936	17106954	AGTGTTCCATAACTGCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12995	FBgn0030826	FBtr0074401	3	1	2	63	X	17104096	17104114	GTATTTGCGGTCGAATGTG		59	17104051	17104070	ATTTACTGCTACCAACTGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32569	FBgn0052569	FBtr0074327	1	1	1	60	X	16632782	16632801	GCTATCACTATGATAGGCCC		59	16632824	16632842	CAGTTAGTTCGTTCCACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	para	FBgn0003036	FBtr0111023	3	1	3	89	X	16380929	16383029	AACTACACAGATCACAAGGA		58	16380859	16380877	GAACACGATCATGAAGCTG		58	NA	
Drosophila melanogaster	50	CG3632	FBgn0030735	FBtr0112988,FBtr0112990,FBtr0112991,FBtr0112989	2	4	4	94	X	16195703	16195723	CACTATATCCTGTCCAGATGG		59	16195779	16195858	TTTCCTCACGTAGCTTGTG		59	NA	
Drosophila melanogaster	50	CG9066	FBgn0030703	FBtr0074166	1	1	1	90	X	15782422	15782440	GACCTGAGCGATTTAAGTG		58	15782275	15782293	ATAGCTTACCAACCAGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Gapdh2	FBgn0001092	FBtr0074112,FBtr0074113	1	2	2	68	X	15763118	15763139	GTCCTATGATGAAATTAAGGCC		58	15763167	15763186	TATCCCAGGATACCCTTCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32584	FBgn0052584	FBtr0074069,FBtr0074070	2	2	2	60	X	15469443	15469464	GATGTCAATAACTCACTTGAGG		58	15469404	15469422	TTTGAGCTTCTGATTCCAC		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12540	FBgn0030570	FBtr0073929	1	1	1	109	X	14390747	14390765	GATTCGTCGGTTTACTCGT		59	14390963	14390981	TCGTAGTACAAACACTGGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	RpS15Aa	FBgn0010198	FBtr0073792,FBtr0073793	1	2	4	121	X	13230407	13231550	CAAACAAATCCAGCCATGG		59	13230304	13230322	TTGATGATCACCTTGGAGC		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	CG32641	FBgn0052641	FBtr0073729	1	1	1	60	X	13078712	13078732	GAATAAACATCCACGAACGAC		59	13078753	13078772	CAGGACATTAAATGCTTCGT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12096	FBgn0030457	FBtr0073727	3	1	1	65	X	13054918	13054936	CTGAACATGCACTTTAGCG		59	13054965	13054983	CTTCTTAGTATGCGAGCCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12096	FBgn0030457	FBtr0073727	1	1	1	60	X	13054606	13054624	GTAATGGAGCTCCTAGTGC		59	13054648	13054666	GACGTTCCATGTAGGACAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1463	FBgn0030406	FBtr0073657	2	1	1	84	X	12504733	12504751	CACCAGGAGGATATGAAGC		59	12504613	12504631	GTTCCTGGTTTGGTTACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	regucalcin	FBgn0030362	FBtr0073576,FBtr0073578,FBtr0073577,FBtr0073575	3	4	4	99	X	11910742	11910817	AGGTTAATCCCAACACTGG		59	11910880	11910898	TACAGGATGTCCAAGTTGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG10353	FBgn0030349	FBtr0114452	3	1	2	105	X	11777211	11777229	GACGATGAGGTCTCTAGAC		58	11775926	11777144	GTCTGTATGTCCTTGATTTCC		58	NA	
Drosophila melanogaster	50	e(y)2	FBgn0000618	FBtr0073540	1	1	1	62	X	11470249	11470267	AGATACGCACCATTCTCAC		59	11470205	11470223	GTTAGGATTCGTCCTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(1)10Bb	FBgn0001491	FBtr0073460	3	1	1	60	X	11218887	11218906	TGTCTGAAGGAGAAGATTGC		59	11218846	11218865	CGTATCCAGACTTCTTCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11122	FBgn0030266	FBtr0073481	2	1	1	157	X	11009668	11009686	GTTATTCAGCAGCTGTTCC		58	11009462	11009480	TTCTCATAGCCCTTCATCG		58	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	Myo10A	FBgn0030252	FBtr0073388,FBtr0110979	3	2	2	80	X	10855468	10855486	GCTACTGCGGTGATATACC		59	10855529	10856138	ATTTGTGACAATGCATGAGC		59	NA	Nonspecific
Drosophila melanogaster	50	feo	FBgn0030241	FBtr0073410	1	1	1	60	X	10747703	10747722	TGGGATCTCACACTTAAGAG		58	10747662	10747681	AGTCGTTGTAGTAGTTCGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sesB	FBgn0003360	FBtr0073423,FBtr0073422,FBtr0073421,FBtr0073424	2	4	4	118	X	10676327	10676424	AAGTACAAGCAGGTCTTCC		59	10676227	10676245	GGGTAGACAAAGCACAGAG		59	NA	
Drosophila melanogaster	50	X11Lbeta	FBgn0052677	FBtr0071493	1	1	1	115	X	10597390	10597408	TCTCTACGAGTTCTCGGAG		59	10597487	10597606	ACTGGATGTCAATGCTGTC		59	NA	
Drosophila melanogaster	50	CG1354	FBgn0030151	FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386	2	4	4	98	X	9674840	9674858	CCGAATACGATTCGATGCT		59	9674919	9675204	TCAAGGCCTCAATATCATGG		59	NA	
Drosophila melanogaster	50	CG34026	FBgn0054026	FBtr0100081	3	1	1	64	X	9428011	9428029	TTTCGTTGGTCTAGTGCAG		59	9428118	9428136	TCAACGCATTTAGGTTGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34450	FBgn0085479	FBtr0112756	1	1	1	63	X	9223972	9223990	AACTATTGCTGAGACAGCC		59	9223927	9223945	CAAGACTCCCTTTCGATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	His3.3B	FBgn0004828	FBtr0071345,FBtr0071347,FBtr0071346	3	3	3	219	X	9048446	9048465	AGGATTTCAAGACCGATCTG		59	9048107	9048125	ACGACAGTGATCGAATCTG		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG7766	FBgn0030087	FBtr0071352,FBtr0114596	1	2	5	94	X	8995191	8995209	AGAAAGTCACGTGATGTGG		59	8993481	8995133	TCATAGTCGATATGCTGCG		59	NA	
Drosophila melanogaster	50	CG15327	FBgn0029967	FBtr0071144	2	1	1	91	X	7772695	7773887	TATCTTGGAACTTGTCACCT		58	7772623	7772642	TCGGTGGATATAGATTTCGA		57	NA	
Drosophila melanogaster	50	CG34417	FBgn0085446	FBtr0112706,FBtr0112707,FBtr0112704	1	3	5	86	X	6448796	6448951	CACCACCAGATAACAAGCT		59	6449001	6449019	TAGGAGGAGTAGTTGGTGG		59	NA	
Drosophila melanogaster	50	swa	FBgn0003655	FBtr0070922	3	1	1	263	X	6258369	6258387	ATCTTTGGACTTTAGCAGC		57	6258036	6258054	TCAAAGTAGTACATGCCCT		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG3566	FBgn0029854	FBtr0089869	2	1	2	193	X	6170573	6170591	TACGATGTGACCAAGTTCC		59	6170252	6170271	GATTCTCACCTAATTGGGCT		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	Mnt	FBgn0023215	FBtr0070579,FBtr0070578	1	2	3	80	X	3593450	3593470	CTAAAGCAACTGAGCTTAAGG		58	3593512	3593727	CAGACAAACTGCTTTGTCG		59	NA	
Drosophila melanogaster	50	trol	FBgn0001402	FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964	2	4	7	81	X	2386428	2386447	ATAGTAATGATCGCAGACCG		59	2384863	2386384	CCAACGTCGTTATTCTCCT		59	NA	
Drosophila melanogaster	50	phl	FBgn0003079	FBtr0112818,FBtr0111025,FBtr0070401	3	3	3	147	X	2236245	2236263	CACAGATCACTCCAACTCC		59	2236374	2236460	CTCCGCCAGAATATTCCAG		59	NA	
Drosophila melanogaster	50	CG11596	FBgn0023522	FBtr0070318,FBtr0070320	3	2	3	119	X	1822604	1823045	CATGGACCAGATTGATATTCCA		59	1823125	1823143	CGTTCTAAGGCTCCTTCAG		59	NA	
Drosophila melanogaster	50	CG14803	FBgn0023513	FBtr0070310	1	1	1	60	X	1763892	1763910	CAAGTCACTCCACTTCCAG		59	1763999	1764017	ATAGAGTTCGTGGTATGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	MED18	FBgn0026873	FBtr0114454,FBtr0070308	2	2	2	114	X	1760520	1760607	TAGCAAAGGGCTATATGTTCC		59	1760683	1760701	TAGCTTTGTGAGATTGGCT		58	NA	InUTR
Drosophila melanogaster	50	CG32806	FBgn0052806	FBtr0070302	2	1	2	77	X	1683687	1683705	CCAACCCATACAATGTGGA		59	1684186	1684204	CATCTCATCACAAACCGAC		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG11412	FBgn0024362	FBtr0070208,FBtr0070210	1	2	3	89	X	1237284	1237304	CGCAACACTTATCTAATTCCC		59	1237355	1237373	GTATATCGAGTACGGCTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	su(w[a])	FBgn0003638	FBtr0110927	3	1	5	60	X	937506	937525	TTCTTAAATGCTTTCCAGCC		58	937545	937566	GAGCAGTCTTCTCTATGATAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR41604	FBgn0085814	FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269	2	4	4	105	U	3449415	3449487	TTTCTGAAGCAAAGTCCCA		59	3449556	3449574	GCTTGATACTGATCTCCCG		59	NA	
Drosophila melanogaster	50	CR41604	FBgn0085814	FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269	3	4	4	104	U	3449415	3449487	TTTCTGAAGCAAAGTCCCA		59	3449555	3449573	CTTGATACTGATCTCCCGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CR40613	FBgn0085756	FBtr0114206	1	1	1	60	U	9557379	9557398	TATCAAGAGTAGCCAAACAC		57	9557338	9557359	GATAGGGACAATATCATATGCG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40801	FBgn0085520	FBtr0113933	1	1	1	122	U	2929610	2929628	ATCTCCAATACCACCAACG		59	2929406	2929424	AATGGGTATCATCTGGCAC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG41328	FBgn0085618	FBtr0114062	3	1	1	142	U	1280596	1280614	GTCAGAGGGAATAAGACGA		58	1278917	1279388	TAATGTTTGTCCCTTGCAC		58	NA	
Drosophila melanogaster	50	CaMKII	FBgn0004624	FBtr0100146	2	1	6	97	4	1065789	1065808	CTACTCTTGAAGACGATGAC		57	1060691	1064101	CAGTATCCTTATATCTTCAGGC		57	NA	
Drosophila melanogaster	50	ey	FBgn0005558	FBtr0100396,FBtr0089236,FBtr0100395,FBtr0089235	2	4	4	80	4	731646	731664	GCCATGTGATATTTCTCGA		57	731705	733136	CTTCCTGTTTCATAATACCTCC		58	NA	
Drosophila melanogaster	50	Ephrin	FBgn0040324	FBtr0089078,FBtr0089075,FBtr0089077,FBtr0089076	3	4	4	83	4	596940	597611	TTAACGGAAACGATGACCA		59	597655	597676	CACCACTATTATAGGTCAGCTC		59	NA	
Drosophila melanogaster	50	CG2165	FBgn0025704	FBtr0089130,FBtr0089131	1	2	5	112	4	363633	363651	GTATGAATCTGGGTGAGGA		58	350957	363558	GCCTATTACTTGTGTTTGCA		58	NA	
Drosophila melanogaster	50	snoRNA:Me18S-G423	FBgn0086052	FBtr0114328	2	1	1	61	3R	3901383	3901401	CAAATTATGTGTCGGCGTG		59	3901424	3901444	TCATATAAGGAAGGCAGTAGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Or85e	FBgn0026399	FBtr0081896	1	1	1	60	3R	4460301	4460319	TCGAGCTCCTAATGTTCAC		59	4460259	4460277	CCAGATCGAATACTATGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1910	FBgn0022349	FBtr0085839,FBtr0085840,FBtr0085838,FBtr0085841	1	4	4	88	3R	27576298	27576374	TAATGTAAATGGTGAGCCC		57	27576425	27576444	TGGGATTGGTTTAGTTACAC		57	NA	Nonspecific, InUTR
Drosophila melanogaster	50	ttk	FBgn0003870	FBtr0085827,FBtr0085825,FBtr0085829	1	3	6	128	3R	27554189	27558647	AACAGCACTTCCGTTACTC		59	27558739	27558757	GGAAATCGTTTCCGAAGGA		59	NA	
Drosophila melanogaster	50	Med	FBgn0011655	FBtr0085815,FBtr0085816	3	2	2	84	3R	27440095	27440113	TATTATCTGGATCGCGAGG		58	27440161	27440235	GGTCAAACACCTTTATGCA		58	NA	
Drosophila melanogaster	50	CG11337	FBgn0039846	FBtr0113314	1	1	3	89	3R	27230175	27230193	AGGAATCCAAAGCAGTTCC		59	27229898	27230066	ATTCTGCCAGAACTGAAGG		59	NA	
Drosophila melanogaster	50	CG11314	FBgn0039800	FBtr0085723	3	1	1	99	3R	26570834	26570852	TAGACACCTGTACGATCCA		59	26570753	26570771	CTCATCTCACTGTTGTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2241	FBgn0039788	FBtr0085680	1	1	1	60	3R	26408510	26408528	TTCGAGAATGGTAAGGGAG		58	26408468	26408487	GAATATTATGGATGGAGCGT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Osi23	FBgn0039771	FBtr0085696	1	1	1	153	3R	26270014	26270094	AATGGCTTAAAGAGGGTGG		59	26269879	26269897	ATCCCATATCCAAAGTGGG		58	NA	
Drosophila melanogaster	50	Fer1HCH	FBgn0015222	FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634	2	4	5	103	3R	26212311	26213196	AGATTTCAAGTGCTCCCTG		59	26212226	26212244	TGATCTCCTCCTGGATCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	hdc	FBgn0010113	FBtr0085621,FBtr0085619	2	2	3	139	3R	26105940	26105958	GGAGGTCGAACTCTATTCC		58	26134965	26183984	CCTCGTCCTCAATCTTGAC		59	NA	
Drosophila melanogaster	50	kay	FBgn0001297	FBtr0099988,FBtr0099991,FBtr0099989,FBtr0099990	2	4	4	174	3R	25617430	25617514	ACGACCGATACTTCAAGTG		59	25617652	25617670	GCGTATTTGAGGTATTCGC		59	NA	
Drosophila melanogaster	50	alph	FBgn0086361	FBtr0085443	2	1	5	152	3R	25422981	25422999	AGATAACCGACTACGTGGA		59	25423186	25423507	ATGCATACAGTTCACATGGT		59	NA	
Drosophila melanogaster	50	Vha100-1	FBgn0028671	FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376	2	8	8	121	3R	24962130	24962213	ACCAATGATAAGCCCTACTC		58	24962294	24962315	CCCATGAACATATAGGTTTCAC		58	NA	
Drosophila melanogaster	50	CG1646	FBgn0039600	FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113301,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324	2	8	8	81	3R	24639526	24639610	TTGACAATGAGTCTGATGC		57	24639654	24639673	CAATATCCGTAGCAGTAAGG		57	NA	
Drosophila melanogaster	50	Mst98Cb	FBgn0004171	FBtr0085278	2	1	1	108	3R	24118606	24118627	CTCTTTCGGTTTATTCTAGTCG		58	24118696	24118714	ATTGTAGCACTTGGGTGAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG12428	FBgn0039543	FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236	1	5	5	80	3R	23531106	23531201	GGAGTACATGCTGAAGAGTC		59	23531045	23531065	TTGATGCTGGACTTTCTAGTC		59	NA	
Drosophila melanogaster	50	CG14264	FBgn0039512	FBtr0085165	2	1	1	82	3R	23166721	23166739	TCTTATGTACGCCTGTCAG		58	23166965	23166983	GTAATGCGAGAGTGTAGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	amon	FBgn0023179	FBtr0085048	1	1	1	113	3R	22526619	22526637	AAATCCACATATACAGCGC		57	22526453	22526542	CATTTCGACCCTCATTGAC		58	NA	
Drosophila melanogaster	50	CG14242	FBgn0039443	FBtr0085034	3	1	1	60	3R	22462734	22462752	AACAGGTGGTGTTTATTCG		57	22462776	22462794	AGTTGCTTAGCAGTCAGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33970	FBgn0053970	FBtr0100012	2	1	2	104	3R	22175802	22175820	CATCTGGGATCATTTGGTG		58	22175888	22181332	AGTAGACCGATCATATGCG		58	NA	
Drosophila melanogaster	50	CG34129	FBgn0083965	FBtr0110870	3	1	1	60	3R	22016590	22016608	CGATAGGGAGAACTATGCT		57	22016548	22016568	CTGGTAGATAAATTTCTCGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8932	FBgn0039390	FBtr0084944	3	1	1	109	3R	21736612	21736630	ATCGTCATCTATGTGCCAG		59	21737020	21737039	AAATTCCGCTGAATAACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	LpR1	FBgn0066101	FBtr0113480,FBtr0084925	1	2	6	155	3R	21575100	21577790	TATAAATGAGGCCACTTGCT		59	21573920	21573938	TATTCATCCGGTGAACAGG		59	NA	
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0113385,FBtr0084927	3	7	7	111	3R	21527327	21527346	TAACCAGGTCCACAAATCTG		59	21527166	21527253	GACATAGATGACGCTTGCT		59	NA	
Drosophila melanogaster	50	Nmnat	FBgn0039254	FBtr0084749,FBtr0084750	2	2	2	119	3R	20771798	20771877	CAAGTATCAGAGCAACATTACG		59	20771957	20771975	ACCAGATCGTCTAGAAGGT		59	NA	
Drosophila melanogaster	50	HdacX	FBgn0051119	FBtr0084734	2	1	1	65	3R	20681264	20681282	TAATGATTGTGGACCTGGA		57	20681217	20681235	CTGCCACGTTATTGAAGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	KrT95D	FBgn0020647	FBtr0084508,FBtr0084507,FBtr0084506	2	3	3	104	3R	19824628	19824646	GGATAAGGAGCGTGATCTC		59	19824481	19824560	TCAATGTACACTCGCAGTG		59	NA	
Drosophila melanogaster	50	CG5857	FBgn0039125	FBtr0084491	2	1	1	60	3R	19751759	19751778	AGTGTATATGACTCAGGCTC		58	19751800	19751819	ATATGGATCCTCTTTGAGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17380	FBgn0039077	FBtr0084428	2	1	1	90	3R	19229100	19229118	GCTGATGAAGACGAATACC		57	19229028	19229048	TCATTACCGAACCTTCTTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cnc	FBgn0000338	FBtr0084392	1	1	7	81	3R	19023686	19035071	CGAAACTGGTGAATACATACG		59	19023625	19023644	GTCTTGAAGCGGAAATTCAG		59	NA	
Drosophila melanogaster	50	CG31158	FBgn0051158	FBtr0113395,FBtr0113396	2	2	2	80	3R	18430801	18430882	CAAGCTGATGCTGAAAGAG		58	18430926	18430944	TTCTTGTGCTCGTTAAGCT		59	NA	
Drosophila melanogaster	50	CG15499	FBgn0038891	FBtr0084124	1	1	1	182	3R	17357748	17357766	ACATTGATGAAGGTGTGGA		58	17357358	17357379	CAGACAATTATGGATTAGAGCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Sep2	FBgn0014029	FBtr0083945	3	1	1	81	3R	16412750	16412768	CGGATACCATTTCCAAGGT		59	16412687	16412705	TAGATGTGCACTCCATTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4783	FBgn0038756	FBtr0083823	2	1	1	60	3R	15774325	15774345	ATTAGATCCGAAAGTGTGGAG		59	15774367	15774385	ACCAGAAATCGTATGTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	endoA	FBgn0038659	FBtr0083699,FBtr0083698	2	2	2	63	3R	14733023	14733041	AGGCCAACCAGTATATGAC		58	14733068	14733086	AAGTCCATGTCCAGTTTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31226	FBgn0051226	FBtr0083675,FBtr0083676	1	2	2	133	3R	14677256	14677274	ACCATTTAACTCCTGGTGC		59	14677088	14677159	TTGCAAGAGATGTTCAGCA		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	cpo	FBgn0000363	FBtr0083534,FBtr0083536,FBtr0083535,FBtr0083537	1	4	6	169	3R	13832727	13832810	CCTATGAGGGCTATGAAGG		58	13834616	13834634	TTCCAAGCGAATTGTTTGG		59	NA	
Drosophila melanogaster	50	CG34053	FBgn0054053	FBtr0113472	1	1	1	60	3R	13230368	13230388	TGTCTACTAGACATGTATGCC		58	13230271	13230289	CTATACGTGGTTCGTTGAC		57	NA	DesignNoJunction
Drosophila melanogaster	50	Dad	FBgn0020493	FBtr0100160,FBtr0083394,FBtr0083393	3	3	3	82	3R	12894609	12894696	TTTGAAACCAATAGGGCTG		57	12894741	12894760	TTAATGCTGAAGTAGTCGAC		57	NA	
Drosophila melanogaster	50	srp	FBgn0003507	FBtr0083216,FBtr0083215,FBtr0100595	2	3	3	89	3R	11827968	11827986	TGGAAAGTGGTTCATTGGT		59	11828036	11828140	GTGGTTTCATATCGTCATTGAC		59	NA	
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204	3	6	8	198	3R	11782022	11785052	GACTGATGAGGAACAATGG		57	11785214	11785232	CTCCCAATCGTTGTTAGTC		57	NA	
Drosophila melanogaster	50	CG5044	FBgn0038326	FBtr0083090,FBtr0083091	3	2	2	97	3R	11183940	11183959	GGGATTCTAGAGAATCTGCA		58	11184283	11184301	AACGTAACCTTCATCGAGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14866	FBgn0038315	FBtr0083081	1	1	1	60	3R	11143392	11143410	CAAGGGTCTAAACTCCCAC		59	11143433	11143452	CATGATCTCCTCATTCTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Tm2	FBgn0004117	FBtr0083078,FBtr0083079	1	2	3	115	3R	11138921	11138939	TCCATCAAGTTGAAGGAGG		58	11140259	11140277	TACCTGTCCTTGTTGATGC		59	NA	Nonspecific, DesignNoJunction
Drosophila melanogaster	50	CG7987	FBgn0038244	FBtr0082978,FBtr0082979	2	2	2	76	3R	10400293	10400311	GGTAATCACAGACGACTGG		59	10400170	10400188	TAATCCCAGCTATCTGCTC		58	NA	DesignNoJunction
Drosophila melanogaster	50	B52	FBgn0004587	FBtr0082803,FBtr0082807	3	2	8	88	3R	9490578	9490596	CCACAGTTACTAGGCAGAC		59	9490648	9491184	CCTTGAGATCTTAATGCGC		58	NA	InUTR
Drosophila melanogaster	50	yrt	FBgn0004049	FBtr0082793,FBtr0114376,FBtr0114375	1	3	4	80	3R	9257183	9257201	ATTGTCAAAGATCCATCCC		57	9257060	9257139	CTTGTTGATAGTCACCCTG		57	NA	
Drosophila melanogaster	50	yrt	FBgn0004049	FBtr0082793,FBtr0114376,FBtr0114375	1	3	4	80	3R	9257183	9257201	ATTGTCAAAGATCCATCCC		57	9257060	9257139	CTTGTTGATAGTCACCCTG		57	NA	
Drosophila melanogaster	50	CG5999	FBgn0038083	FBtr0082659	3	1	1	60	3R	8568217	8568236	CAAGCTATTCATCAACCACG		59	8568176	8568194	CTTTCCATGGTACTGGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Men	FBgn0002719	FBtr0082660,FBtr0082661	3	2	2	179	3R	8539997	8540015	TCTTGGTATTGCCAACCTG		59	8539780	8539798	AAAGTATCGATGGGTTCGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	Octbeta3R	FBgn0053959	FBtr0099995,FBtr0099997,FBtr0099998,FBtr0099996,FBtr0099999	1	5	5	80	3R	8338734	8338873	CTTTCTGTGGTATGTCATCAC		58	8338674	8338692	ATCCAGAATAACACCACCA		58	NA	
Drosophila melanogaster	50	Pros25	FBgn0086134	FBtr0082590	2	1	1	193	3R	8257374	8257477	GCATTATAGCTTCCAACGG		58	8257634	8257652	GTAGGTCAGGTAGTACGTC		58	NA	
Drosophila melanogaster	50	CG14739	FBgn0037987	FBtr0082553	2	1	1	60	3R	7874273	7874291	CCATCATGAAACACTCGGA		59	7874231	7874249	TACGTCTTCATGCAAAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31211	FBgn0051211	FBtr0082480,FBtr0082479	1	2	3	126	3R	7778372	7778390	CCTATGGCGATTCTTCCAG		59	7778479	7778559	CTTATGCGAGCTTTCAACTC		59	NA	
Drosophila melanogaster	50	CG6923	FBgn0037944	FBtr0082432,FBtr0082433	2	2	2	109	3R	7571002	7571087	CTACTTTGGAAACTATTGAGCG		59	7570914	7570932	GAGGTTTAAGCAAATGGCG		59	NA	
Drosophila melanogaster	50	CG31389	FBgn0051389	FBtr0082419	2	1	1	80	3R	7467515	7467534	GCTAATTACACGGTTAGCTG		58	7467577	7467595	GAGAAGGGTTCTTCTGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	hth	FBgn0001235	FBtr0082255	2	1	6	88	3R	6359719	6374337	CATATGATGGACGATGGTG		57	6359649	6359667	GACTGAGGAATACAATCGC		57	NA	
Drosophila melanogaster	50	MICAL	FBgn0053208	FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210	2	5	8	81	3R	5834566	5835033	CTACGAAGGTTCAAACCGA		59	5834503	5834521	GAGTCGGTGGATATCTCAG		58	NA	
Drosophila melanogaster	50	CG16905	FBgn0037762	FBtr0082144	2	1	1	60	3R	5640483	5640503	ACTATCTATCCTCGATCAGCA		59	5640523	5640543	GTGATGTATTTCTTCCACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MtnA	FBgn0002868	FBtr0082158	3	1	1	78	3R	5610019	5610037	GCCTAAATAGCCCATACCT		58	5609959	5609977	GCAAGGCATCTTGATTGAG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	mura	FBgn0037705	FBtr0082118	3	1	3	147	3R	5372637	5372655	GCAACGTCAATTTAAACGG		58	5368635	5372527	GTTTGTACATCGCAATTTGG		58	NA	
Drosophila melanogaster	50	CG8036	FBgn0037607	FBtr0081882,FBtr0081881,FBtr0081883	1	3	3	142	3R	4499021	4499107	GATCACTACCAGCAAGGAG		59	4499213	4499231	GAGATGCCGAACATATCGA		59	NA	
Drosophila melanogaster	50	CG10029	FBgn0037498	FBtr0081591	2	1	1	60	3R	3142441	3142462	GAGTTCCATAACATTGATGACC		59	3142402	3142423	AACCAATGACTATTCCATACCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10277	FBgn0037442	FBtr0113198,FBtr0081722,FBtr0081720,FBtr0081721	2	4	4	89	3R	2211842	2211860	AACAAGTACGACACCTGTG		59	2211913	2212068	CGTGTGATAGGGATGTGAG		59	NA	
Drosophila melanogaster	50	CG9804	FBgn0037251	FBtr0078943	2	1	1	82	3R	262759	262777	ATTCAGCAGGATTACAGCT		58	262695	262713	CAGGTAGTTTCGGAACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14646	FBgn0037241	FBtr0078919	2	1	1	60	3R	216953	216974	TTTAGGAATCTAGAGAACCGAG		58	216995	217013	GTAACTGAATGTTGGAGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CR32028	FBgn0062463	FBtr0076660	1	1	1	111	3L	8434322	8434340	CGCTGTGAAATTAACTCGT		58	8434229	8434247	AAACTCCGCTTTACTTGCT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	AGO3	FBgn0086780	FBtr0111170,FBtr0111171,FBtr0111172	3	3	3	165	3L	23560303	23561655	ACGGATCTAAAGGTTCATCTG		59	23561782	23561800	GTTCCACCGAGTTTATCCT		58	NA	
Drosophila melanogaster	50	CG32452	FBgn0052452	FBtr0078524,FBtr0078523	2	2	2	60	3L	22711292	22711310	TGTTGGATATGAGGCAGAG		58	22711333	22711352	TCCTTATCCATAATCTCGCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7148	FBgn0046301	FBtr0078448	3	1	1	60	3L	21823921	21823939	TGAAGCTCTACTACGACCT		59	21823822	21823899	CTCTTTAGGTTCGCTCTATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG33056	FBgn0053056	FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311	2	5	5	131	3L	21191820	21191990	GGAACATATGAGGGAGCAC		59	21191707	21191726	ATTATGTCCACGCTATCCTC		59	NA	
Drosophila melanogaster	50	chb	FBgn0021760	FBtr0089462,FBtr0089460,FBtr0089461	3	3	3	60	3L	21173982	21174000	GGCTCTTCATCTTGTTGAC		58	21174023	21174042	ATCGAATTGAGTAGATCGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10587	FBgn0037039	FBtr0078333	1	1	1	60	3L	20954744	20954764	CATAGGATGTGCCAGTAAGAG		59	20954704	20954724	GGGCTTCACATACATTATGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4365	FBgn0037024	FBtr0078254,FBtr0078253,FBtr0078252	3	3	3	67	3L	20792308	20792326	GGCATGGAGATCAAGATCC		59	20792356	20792375	GTCTTCGTGTCTACAATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4365	FBgn0037024	FBtr0078254,FBtr0078253,FBtr0078252	1	3	3	64	3L	20792311	20792329	ATGGAGATCAAGATCCTGC		58	20792356	20792375	GTCTTCGTGTCTACAATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	fbl	FBgn0011205	FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188	3	4	5	150	3L	20381809	20381827	CAAGCTGGTCTACTTCGAG		59	20381940	20383027	GACATTGTCCATCTGTAGGT		59	NA	
Drosophila melanogaster	50	CG6933	FBgn0036952	FBtr0074855,FBtr0074854,FBtr0074853	1	3	3	60	3L	20211887	20211905	GTACCCATAACCGATGTGG		59	20211845	20211863	TTCTTGCAACCCTCATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33710	FBgn0053710	FBtr0091698	1	1	1	121	3L	19945581	19945600	TGATAAATATGCGCCTTGTG		58	19945414	19945432	TATCGAACAGAAGCCTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14103	FBgn0036908	FBtr0074927	1	1	1	223	3L	19797323	19797396	CTAAATGAAATTGCGCCGA		59	19797118	19797136	ACCTGATCAGTAACTCGAG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Met75Ca	FBgn0028416	FBtr0075115	1	1	1	63	3L	18465440	18465459	CGTATTCAATGGTTTCTTGC		57	18465396	18465414	TATCTGTGCATCCACAGAG		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34253	FBgn0085282	FBtr0112447	1	1	1	60	3L	18079931	18079950	CATTACCGTCGAAGGATCTC		59	18079890	18079908	TTGGTCTTCCAAGTGATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Eip74EF	FBgn0000567	FBtr0075202,FBtr0075203,FBtr0100411,FBtr0075204	2	4	4	217	3L	17557951	17558465	CCACAACAGGTTCATTTCC		58	17557752	17557773	GTTCTGGTATAAATTCGGATGC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13733	FBgn0036729	FBtr0075225	1	1	1	60	3L	17471277	17471295	TGATGTCAGATCGATCCCT		59	17471235	17471254	CTTTATTTGATCACTCGGCT		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lmpt	FBgn0036672	FBtr0089452,FBtr0089457,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459	3	6	8	124	3L	16905417	16906329	CATCGACTCCAAGGATCTG		59	16906416	16906435	CACAGTAGATCTTATCCGCC		59	NA	
Drosophila melanogaster	50	CG9951	FBgn0036671	FBtr0075337	3	1	1	60	3L	16857595	16857614	GGATACATGAATTCATCGGG		58	16857634	16857655	TCCAGAACTTTGTAGATATCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4842	FBgn0036620	FBtr0075384	2	1	1	150	3L	16361801	16361820	GACATAACCCAGAAATCGGA		59	16361933	16362020	TGTTGATAACTCCCAGCAG		59	NA	
Drosophila melanogaster	50	CG13045	FBgn0036596	FBtr0075472	3	1	1	61	3L	16283390	16283408	TCACCACCTCATCATTCTC		58	16283347	16283365	GTGCTAAATGCTACAGGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13046	FBgn0036595	FBtr0075473	3	1	1	61	3L	16281275	16281294	GTCTCACACCTGGATTACTC		59	16281233	16281252	GCGGGATAGTGATAGTAACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13054	FBgn0036584	FBtr0075481	2	1	1	65	3L	16249245	16249263	CATGTCGGGACTGTATTCC		59	16249198	16249216	ATGTGCTGTAGGGTATACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pka-C3	FBgn0000489	FBtr0075529,FBtr0075528	1	2	2	84	3L	15921444	15921462	GATCTTCGACTATGTCTGC		57	15921313	15921397	ATAGAAGTTGGAGGTTTGAC		57	NA	
Drosophila melanogaster	50	Eip71CD	FBgn0000565	FBtr0075553,FBtr0075552,FBtr0075555,FBtr0075554	1	4	4	68	3L	15505789	15505807	CATAACCACTGAGATTGCA		57	15505898	15505916	AACCTATACTTCTGGTGGT		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG12316	FBgn0036483	FBtr0075651,FBtr0075652	3	2	2	102	3L	15128061	15128081	GGACCATATTGAATCATCTGC		58	15127562	15127997	GAACTGAGAACCACTTCGT		59	NA	
Drosophila melanogaster	50	CG13458	FBgn0036479	FBtr0075637	3	1	1	139	3L	15107472	15107491	ATTCAGCAATCTTGGAAAGC		59	15107593	15107932	ACTTGCAGAAATTGCACAG		59	NA	
Drosophila melanogaster	50	CG17839	FBgn0036454	FBtr0110825,FBtr0075695	1	2	2	185	3L	14858236	14858254	AACCAAGGATCATCGTGTG		59	14858471	14858826	AGCTCCTTAACTGTCAGGA		59	NA	
Drosophila melanogaster	50	Trl	FBgn0013263	FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704	1	8	9	198	3L	14747639	14750013	CTTGCTAAAGAATACACCATGC		59	14747462	14747480	GTAGTCGTCCTTGGTAACC		59	NA	
Drosophila melanogaster	50	CG3919	FBgn0036423	FBtr0075716	3	1	1	110	3L	14405166	14405184	TCATGGATTTCGAGGACAC		59	14405377	14405395	AATCCATGATTGGCAATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG7768	FBgn0036415	FBtr0075736,FBtr0075737	3	2	2	60	3L	14211495	14211514	CGCGTTTACTTCGATATAGC		58	14211534	14211555	GTAGTTCCATCACAATTCTACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32112	FBgn0052112	FBtr0075917,FBtr0075915,FBtr0075916	1	3	3	80	3L	12737069	12737147	TTTACAACTGGTGTCATGAG		57	12737190	12737208	TTCTCTGTACTGTCCATCC		57	NA	
Drosophila melanogaster	50	eap	FBgn0052099	FBtr0076000	2	1	1	60	3L	12143242	12143260	AAGTTGAGGAACTTCTCGT		58	12143283	12143302	CAGTAGCTGATCACTTCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CycA	FBgn0000404	FBtr0076075,FBtr0076076	3	2	2	81	3L	11821209	11821300	GTACATGACGCTGTATATTTCC		59	11821149	11821168	GGATGACATAAGTGATGGCA		59	NA	
Drosophila melanogaster	50	CG11658	FBgn0036196	FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127	3	5	5	186	3L	11694739	11694757	TAATGGTCTCAGTGAGGCT		59	11694509	11694589	GCTGTCATTTACATGCGAG		59	NA	
Drosophila melanogaster	50	CG18815	FBgn0042138	FBtr0076105,FBtr0076104,FBtr0076103	1	3	3	80	3L	11622535	11622553	GAATGTGACGTTCAAGACG		59	11622597	11622691	CTGATGATGTCCTTGACGT		59	NA	
Drosophila melanogaster	50	klu	FBgn0013469	FBtr0076247	3	1	1	135	3L	11001480	11001501	GGATAATGCTTGGATAATTCCC		58	10978140	10978158	ATTCTTCCTCGCTATCTGG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG8009	FBgn0036090	FBtr0076255,FBtr0076254	3	2	2	88	3L	10631764	10631782	ATTCATCCCGTCTTCACAG		59	10632347	10632366	ATTATTTGCGGAGCTATGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	nudE	FBgn0036059	FBtr0114600,FBtr0113158,FBtr0076344,FBtr0113159	1	4	4	98	3L	9893399	9893533	CTCTCAAGCTCAAGTTGGA		59	9893595	9893613	GGTACACCTTCATGGTGTC		59	NA	
Drosophila melanogaster	50	CG6718	FBgn0036053	FBtr0076362,FBtr0076363,FBtr0076365,FBtr0076364	3	4	4	106	3L	9854428	9854506	TGACTCCAATTAACAACCGA		59	9854341	9854359	AAATGCGCGGAAATATGAG		58	NA	
Drosophila melanogaster	50	vsg	FBgn0045823	FBtr0076398,FBtr0076400,FBtr0076399,FBtr0076401	2	4	4	77	3L	9709210	9709228	ATGGATCCTCGTTCATTGG		59	9709269	9709287	TGTAGAACTTGTAGGCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	SH3PX1	FBgn0040475	FBtr0076413	3	1	1	144	3L	9704660	9704678	TTATCGGTATTGGACAGGC		59	9704054	9704072	TCCTTTCGCTTCTGTATGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG5288	FBgn0035950	FBtr0076553,FBtr0076555,FBtr0076554	3	3	3	81	3L	8977960	8977980	CAGCTTCAACTCAGAAATCTC		58	8977754	8977917	TTGGAAGCTCGATTCTGAG		59	NA	
Drosophila melanogaster	50	Cdc6	FBgn0035918	FBtr0076647	2	1	1	60	3L	8626333	8626351	CCAAACCAATGAGGAAACC		58	8626291	8626309	TTGGTATTTGTTGCGTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5978	FBgn0035916	FBtr0076648	3	1	1	71	3L	8616644	8616720	CTGGCATTTAATGGTGTGC		59	8616591	8616609	CAAATAGCCAAGGAGTAGC		57	NA	DesignRelaxed
Drosophila melanogaster	50	Arp66B	FBgn0011744	FBtr0076737	2	1	1	84	3L	8108436	8108517	CTCCATCAAGTATCCGGTG		59	8108370	8108389	ATACTTAAAGACGCACTGCT		59	NA	
Drosophila melanogaster	50	Pdp1	FBgn0016694	FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780	3	8	8	128	3L	7811268	7811288	CCAGATGACAAATACAAGGAG		58	7810754	7811178	GTCGGCATATTGTGTTACC		58	NA	
Drosophila melanogaster	50	CG7457	FBgn0035812	FBtr0076814	2	1	1	83	3L	7718888	7718961	TGATCAAAGACCTTTCAGGT		58	7718824	7718842	TAACTACGCCGATGTTCAG		59	NA	
Drosophila melanogaster	50	CG12262	FBgn0035811	FBtr0076808	2	1	1	72	3L	7713483	7713501	CATCATGACCGCCTTAGAG		59	7713597	7713615	CTTCTGTTCCTTGTTACCG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG8270	FBgn0035703	FBtr0076967	3	1	1	103	3L	6482951	6483024	AGTGCGAGTTGTATTCCAC		59	6483091	6483109	CAATGGTTCAATGCAGAGG		59	NA	
Drosophila melanogaster	50	Jon65Ai	FBgn0035667	FBtr0077067	2	1	1	73	3L	6047296	6047314	GTTCCATTATCGGCAACAC		59	6047241	6047259	GTAGATGGTCACCGATTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10478	FBgn0035657	FBtr0077069	1	1	1	60	3L	6003439	6003457	GTGCATAAGCTCTCAACCA		59	6003397	6003417	GTTCAATGCCTGAATGATCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	mad2	FBgn0035640	FBtr0077113	3	1	1	86	3L	5805868	5805888	TGGGCTAACCATTCTAATGTC		59	5805741	5805820	TTCGAGAGCCATTCTTCAG		59	NA	
Drosophila melanogaster	50	CG10575	FBgn0035632	FBtr0077120	2	1	1	66	3L	5760734	5760753	ATGTTTACGAACCTGGTCAG		59	5760687	5760705	GAAACAATACCCTGTCCGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sif	FBgn0085447	FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713	3	5	8	188	3L	5692112	5697030	GTTCCTTCGCAAGATTTCG		59	5698070	5698091	CGTAGTAACCATTTCTTTACCG		59	NA	
Drosophila melanogaster	50	Sucb	FBgn0029118	FBtr0077134	3	1	2	270	3L	5555965	5556196	TATCACCACCAACAAGAGC		59	5555713	5555731	AATGTCTAGCGGAACAGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34047	FBgn0054047	FBtr0100102	2	1	1	61	3L	5099393	5099411	TGTATATTGTTGCACCCGA		58	5099350	5099368	AACATTGGTGCAAGATGGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Rh50	FBgn0028699	FBtr0073354	3	1	1	147	3L	4913610	4913703	TGTGTTCAGTATCTGCGAC		59	4913814	4913832	GATGTCCGACGTATAGCTG		59	NA	
Drosophila melanogaster	50	CG32246	FBgn0052246	FBtr0073316	3	1	1	60	3L	4621667	4621686	TTTGTGGACTTGAACAATGG		58	4621708	4621727	AGGTCATGAGGTAATACCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Src64B	FBgn0003501	FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321	2	5	5	158	3L	4596190	4596208	ATCTGAGCTTCATGAAGGG		59	4595932	4596069	TCTCAAAGAACCAGTCTTCG		59	NA	
Drosophila melanogaster	50	Ero1L	FBgn0028736	FBtr0073216,FBtr0073217	3	2	2	144	3L	4173146	4173167	AAGATTCTCTACTCAGAGAAGC		59	4173272	4173351	TACTGTTGGATAGTCTGCC		58	NA	
Drosophila melanogaster	50	kst	FBgn0004167	FBtr0112840	3	1	4	128	3L	3358073	3358092	CAGATAATGCAGACAAGCTG		58	3358240	3358276	GGAAATCCTTTGAAGGCTC		58	NA	
Drosophila melanogaster	50	CG11526	FBgn0035437	FBtr0073083,FBtr0073084	1	2	2	103	3L	3322982	3323000	TACTTCAAGGCCAATTACG		57	3322830	3322915	GATATTAGAGCAGCGATGG		57	NA	InUTR
Drosophila melanogaster	50	CG11814	FBgn0035296	FBtr0072855	1	1	1	80	3L	1951225	1951300	ATATGGGATCTCAATGACTGG		59	1951165	1951185	CACATGTGTTATTGGAGACTG		58	NA	
Drosophila melanogaster	50	mu2	FBgn0002872	FBtr0072857,FBtr0072856	3	2	2	80	3L	1945489	1945507	TAAGTCCCAATGAGGAGTC		57	1945372	1945448	TCTGACAGATCTTCTGATAGTG		58	NA	
Drosophila melanogaster	50	CG13937	FBgn0035287	FBtr0072863,FBtr0072861,FBtr0072862	1	3	3	113	3L	1877653	1877770	ACATTATCTGGTGCAATGTC		58	1877559	1877577	TGAGAAGGATCTTCTTGGT		57	NA	Nonspecific
Drosophila melanogaster	50	Oseg4	FBgn0035264	FBtr0072797	3	1	1	65	3L	1733894	1733912	GATAGGGTCTACCAGTTGC		59	1733796	1733865	ATCCGTGTACTTGGAATCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Cct1	FBgn0041342	FBtr0072741,FBtr0072739,FBtr0072738,FBtr0072740	2	4	4	128	3L	1551686	1551704	TGTACTTAATTGTGGGCGT		59	1551796	1551877	CATTCTGGACGATCTCGTC		59	NA	
Drosophila melanogaster	50	CG3371	FBgn0035153	FBtr0072610	3	1	1	66	3L	683158	683176	TACCTAAAGCTACTCGAGG		57	683110	683128	GTGTGATCAGCTCAATCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16940	FBgn0035111	FBtr0072486,FBtr0072487,FBtr0072485	3	3	3	81	3L	215570	215591	TATACACTCACTTTACTAGCCC		58	215691	215709	CAATATTTAAGTGCGGCCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Mtch	FBgn0027786	FBtr0072477,FBtr0072479	1	2	3	83	3L	185060	185138	ACATCTTTCAGTACGCTGG		59	185185	185203	AACCCACCAATTTAGGAGC		59	NA	
Drosophila melanogaster	50	5SrRNA:CR33442	FBgn0053442	FBtr0086434	1	1	1	62	2R	15620888	15620906	AATACATCGGTTCTCGTCC		59	15620844	15620862	ATCTAAGTACTAACCGCGC		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2765	FBgn0035087	FBtr0113119,FBtr0113118,FBtr0072408	3	3	3	212	2R	20849156	20849174	TATGGACGACACCATACTG		58	20848860	20848879	GAGTTCAGCATGTTGTACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ssl	FBgn0015300	FBtr0072352,FBtr0072351	2	2	2	170	2R	20387261	20387280	AAGATCTATTGCCCTAGCTG		58	20387050	20387128	CTGGAAGCCATAGATACGG		59	NA	
Drosophila melanogaster	50	CG3257	FBgn0034978	FBtr0072252	3	1	2	113	2R	20007770	20008247	GCGATTGGGATATCTTAACCA		59	20008321	20008340	TCTAGAACATGCTCGTAGGA		59	NA	
Drosophila melanogaster	50	Ca-P60A	FBgn0004551	FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217	1	8	8	80	2R	19817553	19817571	GGATATCATGGAGAAGCCC		59	19817427	19817509	CCAATAGCCATGTAACGGA		59	NA	
Drosophila melanogaster	50	CG13562	FBgn0034928	FBtr0072135	3	1	1	140	2R	19791998	19792017	TATCCTAACACTGTTCAGGC		59	19792120	19792195	ATATCGCACGTGTCTATGC		59	NA	
Drosophila melanogaster	50	CG5431	FBgn0034888	FBtr0072080	3	1	2	91	2R	19571952	19571970	ATTGAGAAGGCCAATGTCC		59	19572024	19572094	ACTTCCGAGTGATCTTTCAG		59	NA	
Drosophila melanogaster	50	Gr59f	FBgn0041234	FBtr0072059	2	1	1	64	2R	19431243	19431313	CTTAACCACTTTGTTGGTGG		59	19431340	19431358	AGGTGACATCGTATTGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG13541	FBgn0034841	FBtr0072001	3	1	1	60	2R	19172182	19172202	GAAGAACCCTTATTCAAACCC		58	19172222	19172242	TGTGTATCTTCGTCATCATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13511	FBgn0034759	FBtr0071863	2	1	1	60	2R	18547577	18547595	CTACTGCAAGAGTGTCCAG		59	18547619	18547637	GCTATAGCTCCCAATGTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30403	FBgn0050403	FBtr0114523	1	1	1	60	2R	17598120	17598139	CCTACAGATTCGACTTACCA		58	17598079	17598097	ATCTGGCTTAATCTCCGTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Xpd	FBgn0015844	FBtr0071576	2	1	2	80	2R	17059015	17059035	GTAAATGTTACGGACTCACTG		58	17059077	17059147	CAAAGTACTGGCAAATGGG		59	NA	
Drosophila melanogaster	50	CG15649	FBgn0034563	FBtr0071555	2	1	1	140	2R	16860891	16860972	GTACTACGAGAAGAACGGA		58	16860769	16860787	TAGTTCACATTGTGTTCCC		57	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG13870	FBgn0034506	FBtr0086287,FBtr0086288	3	2	2	280	2R	16232028	16232160	GTATCTTCCTTTCAAATGCCC		59	16232402	16232420	ATTCGGATAACTGGTGCAG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Ate1	FBgn0025720	FBtr0086319	1	1	3	81	2R	16143729	16143948	GGCTAAAGATCGTGTTAGTC		58	16143667	16143685	TGGTATTTGCGATACAACG		58	NA	
Drosophila melanogaster	50	CG10737	FBgn0034420	FBtr0086588,FBtr0086585,FBtr0086586	1	3	5	80	2R	15064177	15064195	GATTAGTCACAAGCAGTGC		58	15064238	15064454	AATGACGTTAGTTCCATGGA		59	NA	
Drosophila melanogaster	50	ena	FBgn0000578	FBtr0086583,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582	2	5	6	114	2R	15048911	15048989	CATTCTCAAGGTCAATGGC		58	15049064	15049085	GTTCTTGACTTTCTGAATCTCC		58	NA	
Drosophila melanogaster	50	l(2)08717	FBgn0010651	FBtr0086634,FBtr0086635	2	2	2	128	2R	14685321	14685339	TGAACCACATCGATCTGTC		59	14685151	14685229	TTACGCTTGTCTCATCGAC		59	NA	
Drosophila melanogaster	50	mRpS28	FBgn0034361	FBtr0086714	3	1	1	101	2R	14502017	14502037	CTTTGGTTGGAAGTTTCACTG		59	14501879	14501897	AACTCCAAGTCCTTGATGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	grh	FBgn0004586	FBtr0090012,FBtr0090008,FBtr0090007	1	3	6	146	2R	13726589	13726607	AAACGAAAGATGACAGCCA		59	13726715	13726828	GTAGAAGCTCTTCTCCATGTC		59	NA	
Drosophila melanogaster	50	sub	FBgn0003545	FBtr0086881	2	1	1	87	2R	13633691	13633709	ATTGCGCAAAGAGAATCAG		58	13633564	13633584	CCTCTATCTCATCTTTGAGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG18186	FBgn0034255	FBtr0086896	1	1	1	60	2R	13521536	13521556	CATAGTGGAGAAGTTTCTAGG		57	13521496	13521514	CTTGGTCAGATACTGAGGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	cnk	FBgn0021818	FBtr0086962	3	1	1	196	2R	13306731	13306750	CTGGATGAGTCTATGAAGGG		58	13306495	13306513	ATGAACTGCAGATTGTCGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	GstS1	FBgn0010226	FBtr0087005,FBtr0100258,FBtr0087006	3	3	3	121	2R	12981866	12981885	CATTCTACCTGGAGAAGCTC		59	12981677	12981697	GACCATGTAGTTCATGTAGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG6796	FBgn0034177	FBtr0087057	1	1	1	168	2R	12889886	12889967	GAAATGTTGGCTGAAGGAC		59	12890098	12890117	CCATGTAGTCGTGTATAGCT		58	NA	
Drosophila melanogaster	50	CG15925	FBgn0034129	FBtr0087159	2	1	1	60	2R	12334382	12334400	GCTAGAGAAGGTTTATGCG		57	12334422	12334442	CAGATACTTTCCATTGTCCAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12970	FBgn0034047	FBtr0087289	1	1	2	112	2R	11743972	11743991	CTCAAGGTATCAATTCCCGA		59	11744066	11744144	TCCAGAATGACATTGCCTG		59	NA	
Drosophila melanogaster	50	CG34187	FBgn0085216	FBtr0112380	3	1	1	69	2R	11180983	11181002	AATTCACATCGAACCATGTC		58	11180933	11180951	TTGACAGGCTTCTTTACGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8079	FBgn0034002	FBtr0087367,FBtr0087368	2	2	2	85	2R	11109854	11109872	CTCTAGCAACGAGGATAGC		59	11109921	11110010	TAGCAATGTCTTGAAAGCG		58	NA	
Drosophila melanogaster	50	CG12854	FBgn0033965	FBtr0087467	1	1	1	60	2R	10657482	10657501	GATGAAGAGGATTCCCACTG		59	10657441	10657460	TCTTATCTGTAGCCTTGTCC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12862	FBgn0033950	FBtr0087483	1	1	2	66	2R	10528043	10528061	TAGAGAAGGACAAGTGGAG		57	10527995	10528014	GACAGATTTATGCACTTGGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33468	FBgn0053468	FBtr0087503	3	1	1	60	2R	10494192	10494211	TGGTACATGTACTATGCGAC		59	10494151	10494169	TACGATGGATCTGATCCAC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8485	FBgn0033915	FBtr0087572,FBtr0087570,FBtr0087571,FBtr0087569	2	4	4	91	2R	10126046	10126142	GTTCACAGGGATCTAAAGC		57	10125973	10125992	AAGAACTTGTTGCTAAACCC		58	NA	
Drosophila melanogaster	50	Nmda1	FBgn0013305	FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876	1	6	6	90	2R	8765638	8765659	GAACTTCATATTCTTGGGTCTG		58	8765511	8765587	CATGAGAACCTCTTTCGGA		58	NA	
Drosophila melanogaster	50	CG17580	FBgn0040755	FBtr0087857	1	1	1	78	2R	8694699	8694717	ATACTCCACAGAGTTGGTG		58	8694816	8694834	TTCAAACAGGAGAACAGAC		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	tafazzin	FBgn0026619	FBtr0087864,FBtr0087862,FBtr0087863	1	3	3	129	2R	8641315	8641407	TCTTCATGTTTGGCAAGTG		58	8641204	8641222	ATGTTCACCTTACCTTCGG		59	NA	
Drosophila melanogaster	50	vis	FBgn0033748	FBtr0087945	2	1	2	62	2R	8396972	8397090	CAGTGTCATCTACAGCTGG		59	8396928	8396946	TGAAGACTTTGAAAGCCCA		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	tou	FBgn0033636	FBtr0088094,FBtr0088092,FBtr0113066,FBtr0088091,FBtr0088093	3	5	5	179	2R	7467665	7467747	AAATGGAGCTTCATGAGGA		58	7467439	7467457	TATCGAAGATCTGACGCAC		59	NA	
Drosophila melanogaster	50	inv	FBgn0001269	FBtr0088068,FBtr0088070,FBtr0088069,FBtr0088067	2	4	4	60	2R	7364319	7364339	GCATAGACAATATCCTGAAGG		57	7364360	7364379	CTTAAAGCACCAATCTTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	E(Pc)	FBgn0000581	FBtr0088139,FBtr0088140	2	2	2	93	2R	7344228	7344316	GTTTACCTACCGACTCGAC		59	7344373	7344391	ATTTAGCATCCGAACAAGC		58	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	3	26	26	97	2R	6421151	6421169	AGACTCTAGTCGATTGCAC		58	6421008	6421093	TAGTAAGGTAGCAAAGTAGGGA		59	NA	
Drosophila melanogaster	50	lola	FBgn0005630	FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt	1	26	26	80	2R	6421013	6421095	AGTCCCTACTTTGCTACCT		59	6420951	6420970	CTCTTGGTACTTGACATCCT		58	NA	
Drosophila melanogaster	50	CAP	FBgn0033504	FBtr0088342,FBtr0088347,FBtr0088341,FBtr0088338,FBtr0088340,FBtr0088343,FBtr0088339	2	7	10	83	2R	6182437	6182455	GTCATTCGTCTGTTTCCGA		59	6182825	6183262	TCGATTGTTCTAGATTCCCG		59	NA	
Drosophila melanogaster	50	CG1648	FBgn0033446	FBtr0088493	1	1	2	109	2R	5707414	5707433	CAAACAAACTTACAAACCCG		58	5700149	5700167	CACCGAAGTTCTTCAAGGA		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	CG30338	FBgn0050338	FBtr0088533	2	1	1	60	2R	5486211	5486232	GGCTGATTTCAATGAGTTTCTC		59	5486253	5486271	GGATAGAAGGCTAGTAGCG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG13952	FBgn0033415	FBtr0088509	3	1	1	139	2R	5337152	5337170	AAACCAAGATGGTGGAGAG		59	5337331	5337352	TATGACCAGTATGGATTGAGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pkn	FBgn0020621	FBtr0088602,FBtr0088601	3	2	6	100	2R	5155477	5171346	ATTCGTATTATCAGGGCGA		58	5155395	5155413	TATGGACATACAGCTCTCC		57	NA	
Drosophila melanogaster	50	hig	FBgn0010114	FBtr0088608,FBtr0100119,FBtr0088606,FBtr0088607	3	4	4	153	2R	5122075	5122093	AGTACGGAAATCAGTCGAG		58	5120228	5121958	TCGTAGATACCCTTGTCCT		58	NA	
Drosophila melanogaster	50	Phax	FBgn0033380	FBtr0088569,FBtr0088568	2	2	2	103	2R	5003140	5003158	AAGTGAAGATAAGCAACCG		57	5003283	5003301	TATTGATCTCGTGGGTCCT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8193	FBgn0033367	FBtr0088663	3	1	1	161	2R	4930109	4930185	TATGAGAACGACAGGATTGAC		59	4929968	4929986	CGTGAGGAAGTTAACCAGG		59	NA	
Drosophila melanogaster	50	CG8272	FBgn0033337	FBtr0088686	1	1	1	63	2R	4777366	4777384	TCTTTAGAGCACTGCAGTG		59	4777258	4777279	CCAGCTTGGATATGTTTATACC		58	NA	DesignNoJunction
Drosophila melanogaster	50	sut3	FBgn0028561	FBtr0088779	1	1	1	80	2R	3978152	3978170	TCATGATGACGATCTCCTG		58	3978211	3978294	GTATAGTCGACATTAGTTCCAG		57	NA	
Drosophila melanogaster	50	CG12159	FBgn0033232	FBtr0088888,FBtr0088889	3	2	2	60	2R	3803453	3803471	TGTTGTCTACATCCTCGTG		59	3803411	3803430	AACCCTCATAATAAGCAGCA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1550	FBgn0033225	FBtr0088899	3	1	1	60	2R	3698454	3698472	GGATCTCCTTAGCATTGTG		57	3698412	3698430	AAGCGTAAGGCTATCATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG30497	FBgn0050497	FBtr0088933,FBtr0088934,FBtr0088932	1	3	3	60	2R	3628353	3628373	CTACTTGCGTAACCATTTCTG		59	3628313	3628332	CATCAGGTACTGATACTGCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11166	FBgn0033166	FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012	3	7	7	84	2R	3287432	3287450	GATCTACGACAAGGAGACG		59	3287308	3287384	GGTGACTTCATTCCTGGTC		59	NA	
Drosophila melanogaster	50	CG14589	FBgn0033063	FBtr0085978	2	1	1	138	2R	2025647	2025666	TATCTAAGGATGCGCAAGTG		59	2025765	2025837	CTAACTAGATCATGCCTTGCA		59	NA	InUTR
Drosophila melanogaster	50	CG7791	FBgn0033038	FBtr0086057	2	1	1	100	2R	1647162	1647180	TATATTCTTCAGCTCGGCC		58	1647027	1647101	GTAGGAAAGTAGTTACGAAAGG		58	NA	
Drosophila melanogaster	50	lt	FBgn0002566	FBtr0111123,FBtr0111125,FBtr0111124	1	3	3	80	2L	22832737	22832816	GCATAGTTGACTACTTTAGCC		58	22832857	22832876	GTGATTGTCGAAGATTTGGA		58	NA	
Drosophila melanogaster	50	tio	FBgn0028979	FBtr0089377	2	1	1	60	2L	22021316	22021334	ATCAACCCATACTTGGCAG		59	22021354	22021376	CTAACTTAGAATATCCCAGTCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1416	FBgn0032961	FBtr0085903,FBtr0085904,FBtr0085905	2	3	3	113	2L	21759358	21760490	GAAGAAACTTCATCCAGCAC		59	21760566	21760584	CTGTTTGATGCTATGCCAG		58	NA	
Drosophila melanogaster	50	cul-2	FBgn0032956	FBtr0085900,FBtr0085899	1	2	2	87	2L	21662617	21662694	GCCTTAATACAAGAGGTTCTC		58	21662743	21662761	CAATTAATGACTCCACGCA		58	NA	
Drosophila melanogaster	50	Hr39	FBgn0010229	FBtr0081481,FBtr0081480,FBtr0081479	1	3	4	153	2L	21256007	21256026	GAAGATAACCCTATCGCAGG		59	21257041	21257113	CTCTGTCGTATCTGACTGC		59	NA	
Drosophila melanogaster	50	clumsy	FBgn0026255	FBtr0110895	1	1	2	101	2L	21210451	21210470	ACATTGGAGTACAATGTGGA		58	21210534	21210823	ATACGGAGAATTGAAGGGC		59	NA	
Drosophila melanogaster	50	CG41073	FBgn0069950	FBtr0100266	2	1	1	112	2L	20231625	20231757	CTGGATTTAGCGTAGTCCA		58	20231453	20231471	AGCATAATTCAGGCAACAG		58	NA	
Drosophila melanogaster	50	lok	FBgn0019686	FBtr0081330,FBtr0081328,FBtr0081329	2	3	3	157	2L	20063602	20063680	CTATTTACTTGCCTGAGTGG		57	20063800	20063818	TCCACAATGAGCATTTGGT		59	NA	DesignRelaxed
Drosophila melanogaster	50	barr	FBgn0014127	FBtr0081349,FBtr0081348	2	2	2	63	2L	20058831	20058849	AACACAGTCTTCGAGATCG		59	20058714	20058804	CAATCACTTTGGCAACCTG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG10659	FBgn0032839	FBtr0081350	3	1	1	61	2L	20025651	20025669	AGTCTACTAGCGAGAACGT		59	20025608	20025626	CGACAGGTGATACTCATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31798	FBgn0051798	FBtr0081200	1	1	1	71	2L	19395239	19395257	GTACTACCTGATCCAAGGG		58	19395350	19395368	CTCTTGTAACACGAAGTGG		58	NA	DesignNoJunction
Drosophila melanogaster	50	Ddc	FBgn0000422	FBtr0081167,FBtr0081166	3	2	3	82	2L	19119172	19119193	GACTTTATAGCCGAATATCTGG		58	19118084	19118102	ATCAATGGCTTCAGGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	tup	FBgn0003896	FBtr0081111,FBtr0081112	1	2	2	103	2L	18862252	18862270	GTATTAGGGACAAGCGACC		59	18862106	18862185	ATTGTAGCAGGTTCTGAGC		59	NA	
Drosophila melanogaster	50	CG10602	FBgn0032721	FBtr0089314,FBtr0089315,FBtr0089317,FBtr0089316	3	4	4	106	2L	18856840	18856925	CTAAGGGAAGCCTTAACGT		58	18856752	18856771	CATATAAGGATGCTCCTTGC		58	NA	
Drosophila melanogaster	50	Mst36Fb	FBgn0086682	FBtr0081075	2	1	1	81	2L	18672275	18672347	CAGTAGTTTGACTGATCCGA		59	18672213	18672234	GTTAAGCATTAGTCTCTGATCC		58	NA	
Drosophila melanogaster	50	CG5790	FBgn0032677	FBtr0081050	3	1	1	60	2L	18296035	18296054	ATGATGGTAGTGTAGTGCAG		59	18296074	18296095	CTCAGAATGGAGAATACTTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17681	FBgn0032668	FBtr0081038	3	1	1	80	2L	18154028	18154047	ACATACAATACCAATGTGGG		57	18154090	18154161	GAATCCACTTTGCAGTCTC		58	NA	Nonspecific
Drosophila melanogaster	50	CG5758	FBgn0032666	FBtr0081036,FBtr0081035,FBtr0081037	3	3	3	80	2L	18128003	18128022	TCAGGTGTTCATTATCTCCG		59	18128064	18128147	TCCTTATCCTTGTGCATCTG		59	NA	
Drosophila melanogaster	50	mdy	FBgn0004797	FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917	1	4	4	86	2L	16820786	16820804	ATAACGCCCTAATCCTGAG		58	16820919	16825419	CAATTATTTCCATGGCTAGACC		59	NA	
Drosophila melanogaster	50	Idgf3	FBgn0020414	FBtr0080864,FBtr0080862,FBtr0080863	3	3	3	91	2L	16451848	16451866	GATCAAGGATTTGAGTGCC		58	16451921	16452205	CATCATAGTACCAGCTGGA		58	NA	
Drosophila melanogaster	50	jhamt	FBgn0028841	FBtr0080859	3	1	1	60	2L	16366144	16366164	TATGCCAGTAAGCATTACCAG		59	16366186	16366204	ATCCAATGTCCAGAACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31823	FBgn0051823	FBtr0080810	3	1	1	61	2L	15899211	15899308	CCAGCGAATCAAATAGTTACC		59	15899170	15899191	GAATAAATACCCACCTGTATCG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG31735	FBgn0051735	FBtr0080791	2	1	2	175	2L	15895802	15895878	AATTAACCTGGACCACTGTG		59	15896016	15896034	TTCATACAGGATATGCCGC		59	NA	
Drosophila melanogaster	50	CG15278	FBgn0032554	FBtr0080683	3	1	1	66	2L	14875760	14875779	TTAATTTGGCTCTCCTGGTG		59	14875654	14875672	TTCGACAAGAGAACCAGTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	rk	FBgn0003255	FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610	2	4	5	85	2L	13991706	13992947	GTGGTCGTCCTAGATTTGG		59	13991056	13991657	GTTAGCTCCTCCAGATTGG		59	NA	
Drosophila melanogaster	50	CG16813	FBgn0032490	FBtr0080446	2	1	1	80	2L	13228235	13228253	AACAATACCTGACCAGTCG		59	13228297	13228315	GGAAGCGCACATAGTAGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020	1	17	17	86	2L	12723994	12724013	AGACCTATCAGATCAGACAG		57	12724062	12724215	ATTTGAGCACCTTAATGCC		58	NA	
Drosophila melanogaster	50	MRP	FBgn0032456	FBtr0090015,FBtr0090014	1	2	17	197	2L	12726932	12726950	TTATATCAAGAGCGTTGGC		57	12727111	12729943	TATTTGGATAGCACTTGGC		57	NA	
Drosophila melanogaster	50	Or33a	FBgn0026392	FBtr0080278	3	1	1	60	2L	11935345	11935363	GGCCAGTTCCTTTCTAGTG		59	11935384	11935405	CAAAGAACAGGATGTTGATGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17104	FBgn0040496	FBtr0080105	2	1	1	82	2L	10678789	10678908	CATTGAGGAAACTACAGAACTG		58	10678951	10678969	CTGTTTCAGTGGTCTCCTC		59	NA	
Drosophila melanogaster	50	CG17098	FBgn0032276	FBtr0080103	2	1	1	60	2L	10652781	10652800	GTCGCTAATAAGATACGACC		57	10652822	10652841	AACCACTGATAGGATAACCA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lrr47	FBgn0010398	FBtr0080092	1	1	1	60	2L	10518498	10518518	GCTGTGGATAAGTATATGCTG		58	10518540	10518558	GATCTATTAGCACAGCGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5198	FBgn0032250	FBtr0080026	2	1	1	103	2L	10436404	10436422	CAAAGGACAATTGGTTGGA		58	10436554	10436572	CTTCTCCTCATCGGAAGAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33723	FBgn0053723	FBtr0091721	1	1	1	99	2L	9440163	9440252	CACTCCTGTCCATATAATAACG		58	9440085	9440103	AATCACCTTCCGGATAAGG		58	NA	
Drosophila melanogaster	50	CG13384	FBgn0032036	FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079658	3	4	6	231	2L	8385087	8386225	ATACAGTCAGTATTCCCGAG		58	8386516	8386535	TTATAGGACTTATCCGTCGA		57	NA	DesignRelaxed, InUTR
Drosophila melanogaster	50	CG34132	FBgn0083968	FBtr0110879	3	1	1	106	2L	7885678	7885697	ACTTATGGACCAGGTTAAGC		59	7885766	7885784	AAGTTCCCGGCTTATTGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Proct	FBgn0045038	FBtr0079562	3	1	1	188	2L	7870284	7870302	GACGATTTGGACAAGTTGC		59	7865997	7866015	ATTAGAGTTGCCGTTGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31904	FBgn0051904	FBtr0079502,FBtr0079501	1	2	2	284	2L	7735484	7735566	ATTTAAAGGCATTGGCTACG		58	7735106	7735124	GTGTAGGACAGTCCATGTC		59	NA	DesignRelaxed
Drosophila melanogaster	50	TepII	FBgn0041182	FBtr0079510	3	1	5	107	2L	7696802	7698737	CCTTACAACACTGGTCCTC		59	7696713	7696731	ATCTCCAGAATCACCTCGT		59	NA	
Drosophila melanogaster	50	Myo28B1	FBgn0040299	FBtr0079475,FBtr0079473	3	2	4	84	2L	7687916	7687984	CCATTGGACTCCGATAAGG		59	7688029	7688050	GTACCTTAACAACAGCTTTGAG		59	NA	
Drosophila melanogaster	50	CG5261	FBgn0031912	FBtr0079445,FBtr0079444	3	2	2	103	2L	7428203	7428285	TAAGCTCAACGAAGGTGAC		59	7428351	7428370	CCTGGATGAGAATCTTAGCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG34310	FBgn0085339	FBtr0112506,FBtr0112507	2	2	2	96	2L	6674206	6674225	ACTGAAACTAGTGGAACCAC		59	6674356	6674374	GTCGATCCAATACCGATGG		59	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Ent2	FBgn0026585	FBtr0079290	1	1	1	60	2L	6563505	6563525	AGAAATCTGATTCTAAGGCCC		59	6563546	6563565	GCTGCTTTCTTGAAGATCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Kr-h1	FBgn0028420	FBtr0079194,FBtr0079195	3	2	2	119	2L	6095045	6095063	CTAACTACGATGACACCCA		58	6095144	6095248	GTAGAGCGGATTCATATTTGG		58	NA	
Drosophila melanogaster	50	CG14013	FBgn0031720	FBtr0079121	3	1	1	61	2L	5553644	5553665	TTACAATGACTACATCTCCTCG		59	5553604	5553623	TTTGATTGCCCAGATATCTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	l(2)05714	FBgn0010607	FBtr0079050,FBtr0079051	3	2	2	60	2L	4970475	4970494	ACAGAATGAAACAGATCTCC		57	4970434	4970453	GAGCTGTATCATCTCTTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Jon25Bi	FBgn0020906	FBtr0079054,FBtr0100432	3	2	2	85	2L	4954847	4954865	GTGACCATCTACTACGGAG		58	4954780	4954799	TTGTGGTTCTGGATGAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3036	FBgn0031645	FBtr0077391	1	1	1	114	2L	4902800	4902818	TATTGCACCGAACTTTGGA		59	4902894	4902982	GAAGGATTGATCCTTGTAGGT		59	NA	
Drosophila melanogaster	50	CG3702	FBgn0031590	FBtr0077477	3	1	1	60	2L	4226115	4226133	ATACCATCGTGTCTCACTG		58	4226073	4226091	TTAGTTTGGTCCACTACGA		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3542	FBgn0031492	FBtr0077648,FBtr0077649	2	2	2	79	2L	3024055	3024073	GTTAGCGGCTATAGAGGTG		59	3024169	3024190	GTTTATCCTTAAACACCACAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG31681	FBgn0051681	FBtr0077802	3	1	1	60	2L	2286657	2286675	TCATCTACAGTGATCGAGC		58	2286615	2286636	GTCACAGTTACATTAGAAAGGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4270	FBgn0031407	FBtr0077754	2	1	2	81	2L	2263984	2264004	CACTTTACTCAGCTCATTTGG		59	2264100	2264119	AAACCACCCAAGTTCTATCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34174	FBgn0085203	FBtr0112365	2	1	1	89	2L	2214832	2214853	GGAGCTATCCGAAAGATATGAG		59	2215032	2215050	ATGAGCTGGCTTCTTTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10869	FBgn0031347	FBtr0113010	1	1	2	140	2L	1586762	1586780	GGTAACACCTCGAAGTTCC		59	1585158	1585176	ATAGTATCCCATGATGCCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG5556	FBgn0031332	FBtr0077948	1	1	1	60	2L	1352714	1352733	GCTATTGCATCTTCGATCTG		58	1352617	1352636	GCCCTCTTATAGACATGACG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4375	FBgn0031295	FBtr0077997	3	1	1	62	2L	1026477	1026495	ATCGGAACACAGTGAAGTC		59	1026433	1026451	CCGTTGGTAGTCTTGTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	drongo	FBgn0020304	FBtr0078035,FBtr0078036,FBtr0078037	1	3	3	111	2L	836547	836565	TCCCATCTACAATGCAGTG		59	835456	835474	CTTAAGAGCGGCATATCGA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2813	FBgn0031268	FBtr0078069	2	1	1	81	2L	575078	575150	CTACTTTGTCATTAGTGGCG		58	575194	575212	TCCAAGTCCTAATAGTGCG		58	NA	
Drosophila melanogaster	50	Gs1	FBgn0001142	FBtr0078115,FBtr0078114	1	2	2	62	2L	132961	132979	TAATTAGCGATCAGGAGCC		58	133004	133023	CGTCCACGTCTAATAAAGTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pncr004:X	FBgn0047095	FBtr0091949	1	1	1	93	X	19068655	19068673	CCTTTCTGAAGAGTCCCAC		59	19065309	19068598	TATCGAGGGTATCTTGGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18809	FBgn0042132	FBtr0074810	3	1	2	284	X	19637732	19638305	TAACAACAAAGGCGAATCC		58	19636928	19637485	GCAAATCGAAATTGTTTGCG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	mei-217	FBgn0028581	FBtr0091941	2	1	1	151	X	17035133	17035151	GGAAGCATGTCATCTACGA		59	17034937	17035018	GATGGTATGGTGCCTATGG		59	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	CG13008	FBgn0030780	FBtr0074323,FBtr0074322	3	2	2	75	X	16605540	16605561	TGAGCTATCAAGATATGTTCGG		59	16605597	16605689	AACCGAAACTCAAAGTTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Traf3	FBgn0030748	FBtr0074275,FBtr0074274,FBtr0074273	2	3	3	110	X	16310666	16310684	CGCATCAAGGATTACTCGA		59	16310758	16310836	TATATCCAGCCGTAGAGCA		59	NA	
Drosophila melanogaster	50	ct	FBgn0004198	FBtr0071069	3	1	3	125	X	7526283	7526301	GTTATATCGGCTACCGACG		59	7526813	7539815	GCGGAATTCTGAATGAGAG		58	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG3342	FBgn0029874	FBtr0070918	2	1	1	61	X	6421033	6421051	GAGACACCTTCCAATGAGG		59	6420990	6421008	TTTGACGAACCTATGGGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34434	FBgn0085463	FBtr0112735	3	1	1	171	X	5509831	5509975	GACCAAGAACACAAACGTC		59	5509678	5509696	AACTGCATTCCAATCACGA		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12688	FBgn0029707	FBtr0070653	2	1	1	64	X	4275988	4277076	CAAGAAGATCCAAGCATCC		58	4277104	4277122	GAGTGTCCTCTAAGTCCTG		58	NA	DesignNoJunction
Drosophila melanogaster	50	norpA	FBgn0004625	FBtr0100671,FBtr0070651,FBtr0100670,FBtr0070650	3	4	4	120	X	4243571	4243589	TCAAGGTCGATGAATACGG		59	4243738	4247510	ATCTTCGGATCCTTTGGTG		59	NA	
Drosophila melanogaster	50	CR42205	FBgn0085832	FBtr0114290	1	1	1	60	U	6017726	6019178	AATGGATATCGCATCTACTTCC		59	6017687	6017706	AGAACCGTTAACGTAGTCTG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG2052	FBgn0039905	FBtr0089129,FBtr0089128	1	2	2	84	4	402798	402816	GTGTTCCTACTGTGATCGT		59	399510	402751	TTTATAGGGTCGTTCTCCTG		58	NA	
Drosophila melanogaster	50	Anp	FBgn0000094	FBtr0085611	1	1	1	67	3R	26035713	26035731	TACTTTGTGGTCCTTGTCG		59	26035762	26035780	AATACTGCATCCGAAGGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9997	FBgn0039597	FBtr0085314	2	1	1	60	3R	24582369	24582387	TACCTTGACCAATTCGGAC		59	24582327	24582347	CTGATAGAGTCTCACCATCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG5959	FBgn0039387	FBtr0084940	2	1	1	81	3R	21724936	21724956	CATACACGGATTTACATTCCG		59	21724998	21725084	ATCCAGCTCCTGAATATTGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alpha4GT2	FBgn0039378	FBtr0084906	2	1	1	60	3R	21668119	21668138	CAACAGACATAACGTAACCA		57	21668160	21668179	GTTCCAAACATGAATCACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	twin	FBgn0011725	FBtr0084567,FBtr0084570,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569	1	6	6	80	3R	20025044	20025063	CTAAGACTATGTCCGAGCTG		59	20024922	20025001	TGATCAGCGTAAACTTGGA		58	NA	
Drosophila melanogaster	50	CG4572	FBgn0038738	FBtr0083861,FBtr0083860,FBtr0083862	1	3	3	60	3R	15688809	15688827	GTGGGCAATAAGACATTCC		58	15688767	15688786	TCTTCAAGTGAAGTTCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11779	FBgn0038683	FBtr0100549,FBtr0083749,FBtr0100548	3	3	4	146	3R	14982252	14985333	TTTACAGAATAGCTGCCCT		58	14982061	14982079	TCATGTTGTCGAAGAACTG		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG7718	FBgn0038649	FBtr0083682	3	1	1	132	3R	14570378	14570454	AAATGCAAACGGCTTTCAG		59	14570264	14570283	GTACTCGAAGAAGTTAACGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14312	FBgn0038596	FBtr0083599	1	1	1	92	3R	14108903	14108921	GATGGAAACTTCCTGAGCA		59	14108829	14108847	TATGGCATGGTAGAGACTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG17806	FBgn0038548	FBtr0083527	3	1	1	60	3R	13628488	13628508	CAAAGGAGAAGGATTCTACCA		59	13628448	13628466	CTGTCTTAAGAGGCACTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CSN5	FBgn0027053	FBtr0083292	2	1	1	140	3R	12296669	12296690	GGAACAAATACTGGGTAAACAC		59	12296791	12296868	TCTCATTGACATCGGTTCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	ird5	FBgn0024222	FBtr0083236	1	1	1	87	3R	11872785	11872871	AAAGACCTATTCGATTGCG		57	11872716	11872736	CGGCGTCATTATTTAACTCTG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14376	FBgn0038153	FBtr0082784	1	1	1	111	3R	9248179	9248198	ACGTAGTTCCTATCAGATCC		58	9248272	9248343	CTTGAAGATCTCACCATCC		57	NA	
Drosophila melanogaster	50	poly	FBgn0086371	FBtr0082772	2	1	1	60	3R	9188264	9188282	AAATGGCTAACGAATACCG		57	9188222	9188241	CGCGAATATCCTCTACTAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14695	FBgn0037850	FBtr0082335	1	1	1	60	3R	6704807	6704825	CAAGTGGATAAGTCTGCTC		57	6704765	6704783	TCCGAACAATATACGACCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34108	FBgn0083944	FBtr0110788	3	1	1	107	3R	6051480	6051553	GTGAAACCAAGAAGCTACTC		58	6051622	6051641	ATCGTTTATGGACAGGATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG34108	FBgn0083944	FBtr0110788	1	1	1	106	3R	6051480	6051553	GTGAAACCAAGAAGCTACTC		58	6051622	6051640	TCGTTTATGGACAGGATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33631	FBgn0053631	FBtr0091608	1	1	1	60	3R	5889832	5889902	TTCAGAAACCGATACTTCGT		59	5889925	5889943	TTCATAAAGCGAGAGTCCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9444	FBgn0037730	FBtr0082099	2	1	1	88	3R	5507627	5507706	CAGGAACGAATAAAGAATTCCC		59	5507560	5507579	AGTAATTCGCCCATCATGAG		59	NA	
Drosophila melanogaster	50	CG8358	FBgn0037727	FBtr0082081	1	1	1	60	3R	5502335	5502354	GGTTACGCTTTATCAATCCA		57	5502375	5502454	GAAGTTGTTAGCCATGTAGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG16736	FBgn0037668	FBtr0081985	1	1	1	75	3R	5082868	5083009	ACTATCGAAATTTCTGGAGAGG		59	5082814	5082832	TTCCAACCGGTAAATAGGT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9837	FBgn0037635	FBtr0081933	1	1	1	96	3R	4635387	4635466	ATTTACTTTGGTCCAGGGT		58	4635309	4635327	AATGGTCTTGTCGATGGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7994	FBgn0037599	FBtr0081875	1	1	1	105	3R	4418269	4419006	CAAACATGTTGCAACACTG		58	4419075	4419093	TTTCTGCTTGTATTGGTGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Obp83ef	FBgn0046876	FBtr0078618	1	1	1	60	3R	1935561	1935579	CTCGTGGATGTACCATGAG		59	1935519	1935537	CTCCACTAGCTTATTCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14656	FBgn0037278	FBtr0078878	1	1	1	143	3R	623417	625429	ATTGGTGAACTTGGTGGAG		59	623292	623310	TTGTTGATAACCGGACGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	pncr011:3L	FBgn0083068	FBtr0091958	3	1	1	108	3L	11090061	11090079	CGACACTTTCTCAATAGCT		57	11090151	11091199	AAAGAGAACGTCGTAAACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Hr78	FBgn0015239	FBtr0078392,FBtr0078390,FBtr0078389,FBtr0078391	3	4	4	89	3L	21488570	21488706	GACATTGATGTTCGCTACC		58	21488499	21488517	TCTGCCTTCGGAATATCTG		58	NA	
Drosophila melanogaster	50	CG32428	FBgn0052428	FBtr0078222	1	1	1	60	3L	20465779	20465797	TGTACACCAAGAGATGTCG		59	20464245	20465755	AAATCATTGCAGTACTGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Dcp2	FBgn0036534	FBtr0075540,FBtr0100528,FBtr0075539,FBtr0075538	3	4	4	153	3L	15816273	15816356	GTTGTTCCAACACATTCCC		59	15816138	15816156	GAAGTAGGACTGCACTAGC		59	NA	
Drosophila melanogaster	50	Ufd1-like	FBgn0036136	FBtr0076223	1	1	1	66	3L	11115947	11116022	ATTATTATGCCTCCCTCGG		58	11115899	11115917	TGAACAGCATTGGATACTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3335	FBgn0036018	FBtr0076383	3	1	1	157	3L	9619782	9619859	AAACCCAAGATAATGATGGC		58	9620028	9620046	AGGAATACGTAAGGATCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG33702	FBgn0053702	FBtr0091690	2	1	1	62	3L	9506050	9506142	ACTCGTGTCCATATACAGAG		58	9506007	9506026	GCGTCTTATCGTTGAAAGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	path	FBgn0036007	FBtr0076428,FBtr0076427	2	2	2	109	3L	9490135	9490223	CCAACAACCGATAATGAAACTC		59	9490047	9490066	AAGATTCCCATGATGAGACC		59	NA	
Drosophila melanogaster	50	RNaseX25	FBgn0010406	FBtr0076752	1	1	1	74	3L	7963842	7964059	GCGACATATCGTATTCGGA		59	7964097	7964115	ATTCACTGTCATCGTCTGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7386	FBgn0035691	FBtr0076999	3	1	1	138	3L	6184095	6184116	CCATGTTAAGATCGTACATGAG		58	6184215	6184291	GTCACAAACCTTGCATTCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Lcp65Ag3	FBgn0086611	FBtr0077061	3	1	1	75	3L	6123688	6123706	ATAAGAACGGATTCCAGCC		59	6123631	6123650	TACAGTGAAAGCAACTTCAC		58	NA	DesignNoJunctionSingleExon, InUTR
Drosophila melanogaster	50	Sras	FBgn0029121	FBtr0077083	3	1	1	91	3L	5557284	5557302	TATACCATACAGCCTGACG		58	5557357	5557434	AGTCCAGATCGAAGTAGGA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Sucb	FBgn0029118	FBtr0077135	2	1	2	244	3L	5556489	5556604	ATCGTTCATAAGGTTCCCG		59	5556182	5556201	TACTTGGTGGTGATATGGAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG14995	FBgn0035497	FBtr0073272,FBtr0073274,FBtr0073271,FBtr0073273	3	4	4	80	3L	4098196	4100795	AAGTTCTGGCTCTTAGTGTC		59	4098135	4098153	GCAAATATAGCTCCTGCAG		58	NA	
Drosophila melanogaster	50	kst	FBgn0004167	FBtr0112840,FBtr0073070,FBtr0073072,FBtr0073071	1	4	4	80	3L	3365741	3365818	AGTCCATGAAGCAACAGTC		59	3365860	3365880	AGTTACGAGAACTAACTGGTG		59	NA	
Drosophila melanogaster	50	pita	FBgn0034878	FBtr0072113,FBtr0072112	2	2	2	152	2R	19437404	19437478	GTCATGAGACAGTCCACTC		59	19437270	19437288	ACAGCATGTAGGACTTGTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ugt58Fa	FBgn0040091	FBtr0071934	2	1	1	218	2R	18531141	18531311	TGGAATCTCAATGGAATCGT		59	18530881	18530901	TTTCGGTAACGTTATCCAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Pros29	FBgn0003150	FBtr0071522	3	1	1	257	2R	16882796	16882951	GATCTATCGCCTGAACGAC		59	16883172	16883190	GACTGGTACAGTTGGTAGC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG3221	FBgn0034569	FBtr0071550	3	1	1	69	2R	16880287	16880305	TGCTGTTCAGGATCAACTG		59	16880177	16880195	GGAATCATAGACAAACGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	grh	FBgn0004586	FBtr0090009,FBtr0090012,FBtr0090011,FBtr0090008,FBtr0090007,FBtr0090010	3	6	6	164	2R	13726937	13727109	ATGCAGACCGATAAGAAGG		59	13727237	13727255	CAACGGTGTATACACCTCC		59	NA	
Drosophila melanogaster	50	CG10956	FBgn0034195	FBtr0110777	3	1	1	67	2R	13010636	13010715	GGCAATGGTAGTTTGACAC		59	13010587	13010606	AAAGCAAATGGATGAGTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6665	FBgn0034172	FBtr0087054	1	1	2	77	2R	12845634	12845652	CGAATGAGTTCGGAAAGGA		59	12845693	12845779	TTAGCTGTTTGGATGCCTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33459	FBgn0053459	FBtr0089859	3	1	1	82	2R	12376135	12376226	GAATATACAGTTGCCATTCGTC		59	12376269	12376287	TCTACAGAATCCACAAGCC		58	NA	
Drosophila melanogaster	50	Strn-Mlck	FBgn0013988	FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276	3	5	7	82	2R	11836642	11836721	TTTGCTACGTGCTACTCTC		59	11836578	11836599	ATCCGCTCTAGTTATATTCGAG		59	NA	
Drosophila melanogaster	50	CG30060	FBgn0050060	FBtr0087714	1	1	1	60	2R	9310974	9310993	TATATCCCTGCGATATCGAC		58	9310933	9310952	TTCAGCGTCTCATTAATCAC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ndg	FBgn0026403	FBtr0088349,FBtr0088350	2	2	2	116	2R	6208456	6208475	AAAGGATACCATTGAGGTGG		59	6208554	6208634	AACAGTTTCTCCCTGTAGG		58	NA	
Drosophila melanogaster	50	nec	FBgn0002930	FBtr0089052	1	1	1	106	2R	3044374	3044392	ACCAAGTTGATGGATCAGC		59	3044220	3044304	AACTTGGCATAGGAAGCTG		59	NA	
Drosophila melanogaster	50	Bap170	FBgn0042085	FBtr0086107	3	1	1	128	2R	2525514	2525702	GAGCAACATTCACATCCAG		58	2525794	2525812	TTAGAGTCAATACCCTCGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	His2A:CG33853	FBgn0053853	FBtr0091857	1	1	1	60	2L	21518936	21518955	GAATTATTCCGCGTCATCTG		59	21518978	21518996	AGCAGCTTGTTTAACTCCT		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	Oseg5	FBgn0032891	FBtr0081451	2	1	1	87	2L	20833677	20833695	ACAGCATCTGGTATTGTCC		59	20833447	20833626	CCAAATTCCGTCGTATCCA		59	NA	
Drosophila melanogaster	50	ik2	FBgn0086657	FBtr0081389,FBtr0081390	2	2	2	116	2L	20678034	20678052	ATAAAGACCCTGCTGACTG		58	20678130	20678210	CCATTGATCGTTAAGTTCGTC		59	NA	
Drosophila melanogaster	50	CG31687	FBgn0051687	FBtr0081361	3	1	1	90	2L	20451270	20451379	GTAATAGGTGGCCATTTCCT		59	20451432	20451450	AAGTGGAGTCTATGATGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	lectin-37Da	FBgn0053532	FBtr0091498	1	1	1	60	2L	19418503	19418522	CCCTTCATTAAGATCAACGA		57	19418542	19418563	CATACCAATTGACCTTAGTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Pax	FBgn0041789	FBtr0100449,FBtr0081211,FBtr0081213,FBtr0081212,FBtr0081210	2	5	6	98	2L	19410546	19410564	CAAACATCAAGCTCTGCAG		59	19410400	19410485	TAGTGCTCTTGATACACCTG		58	NA	
Drosophila melanogaster	50	CG10641	FBgn0032731	FBtr0081185	3	1	1	80	2L	18986729	18986747	AAGTGGTCAACGTCTACAC		59	18978765	18986688	CGTATGTATTGAAGGTCTTCTG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31780	FBgn0051780	FBtr0080758	1	1	1	60	2L	15696224	15696244	ACCTAGGATGTGTTTCAACTG		59	15696263	15696514	CTAGGCTCCTTGATTATTAGGT		58	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11864	FBgn0028944	FBtr0080784	2	1	1	162	2L	15613070	15613141	TGAAGATGATGCATTTGCC		58	15612926	15612944	CAAGTGAACGGTATTGCAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32971	FBgn0052971	FBtr0114463	2	1	3	184	2L	14274926	14277316	CTTGACCAATCTCAGTGGA		58	14277525	14277543	GGACGTTATCCTTTAGCTG		57	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG32972	FBgn0028905	FBtr0080599,FBtr0080600	2	2	2	131	2L	14164509	14164588	AATGATGTGACTCTCACCAC		59	14164397	14164415	CTGCAGGATATCTCCAACG		59	NA	
Drosophila melanogaster	50	aret	FBgn0000114	FBtr0080345,FBtr0080347,FBtr0080344,FBtr0080346	3	4	4	122	2L	12298741	12298823	ATTAAAGTGACCCTGAGCC		59	12298909	12298927	GAGATTGGCCTGAATTTGC		59	NA	
Drosophila melanogaster	50	rho-6	FBgn0032415	FBtr0080360	2	1	2	111	2L	12131373	12131391	GATCTTCAAACCGGAATGG		58	12131054	12131299	ACCTATAAAGCACTGAAAGC		57	NA	
Drosophila melanogaster	50	CG6192	FBgn0032341	FBtr0080230	1	1	1	80	2L	11105258	11105278	CGCGAGTACTATAATAAGCAG		58	11105130	11105216	AAAGTTTCTTGCTGCTTGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8086	FBgn0032010	FBtr0079620,FBtr0079623,FBtr0079621	1	3	4	89	2L	8252657	8252675	CTCCAACTGTTAGGATCGG		59	8252525	8252604	CTTTGCTGCCTATCAAGGT		59	NA	
Drosophila melanogaster	50	CG14535	FBgn0031955	FBtr0079564	1	1	1	109	2L	7847877	7847895	TATCAGCTCTGAGTCACTG		58	7847646	7847805	CAGCTGATCAAATTGTTGTC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG5171	FBgn0031907	FBtr0079440,FBtr0079439,FBtr0114588	2	3	3	72	2L	7404147	7404232	ATGAAGATGCCATGAGAGTG		59	7404267	7404285	GTTTGAATCTGGGCATCAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG34174	FBgn0085203	FBtr0112365	2	1	1	62	2L	2214840	2214860	CCGAAAGATATGAGAAGGAGG		59	2214884	2215031	TCGAGTGAGCAATGTTACC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11723	FBgn0031391	FBtr0077852	1	1	1	89	2L	2146810	2146900	TAATGCAGCAGGATGTCTC		59	2146739	2146757	GTTTCTGCTGTATCTTGCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG3876	FBgn0031284	FBtr0078039	3	1	1	84	2L	818626	818705	AGTCTATACTTTCTTCGCGT		58	818561	818579	GTAGAAGTCCCAGTAGGAG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR31914	FBgn0051914	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	e(y)1	FBgn0000617	FBtr0074463	2	1	1	65	X	17736311	17736329	ATAAGGCCAAGATCAGTGC		59	17736358	17736376	GGATGGACATGATCACCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG32572	FBgn0052572	FBtr0074324	1	1	1	115	X	16620590	16620667	TATATGCCAAAGTGGCTAGC		59	16620745	16620763	TTAGTTCACTTTGTGGCCT		59	NA	Nonspecific
Drosophila melanogaster	50	Myb	FBgn0002914	FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169	1	4	5	82	X	15749875	15749893	GGTCTATAATCGCGTTGGA		59	15749747	15749829	GTCCAAGTTGACTCTTGTG		58	NA	
Drosophila melanogaster	50	CG9281	FBgn0030672	FBtr0074057,FBtr0074056	3	2	2	81	X	15601694	15601780	GTGATTATGGTTCAGAACGT		57	15601632	15601650	GATCAATTCCGAACTCCAG		57	NA	
Drosophila melanogaster	50	ras	FBgn0003204	FBtr0071496,FBtr0071494,FBtr0071495	3	3	3	90	X	10641989	10642007	CTACCCTATTTGGAGTGCG		59	10642057	10642150	GGCCATTATAGATCATATCCCTC		59	NA	
Drosophila melanogaster	50	alpha-Man-I	FBgn0010338	FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475	3	6	7	170	X	10173218	10217611	GAAGGTCAAAGAGATGATGG		57	10173067	10173085	AGTCCCATAATGTACAGGG		58	NA	
Drosophila melanogaster	50	CG12065	FBgn0030052	FBtr0071215,FBtr0071214	1	2	4	91	X	8480265	8480589	ATACACCACAGTCGATTCC		59	8481291	8481311	GAGTATACACATTCGATTCGC		58	NA	
Drosophila melanogaster	50	SK	FBgn0029761	FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070765,FBtr0070767,FBtr0070769,FBtr0070766	3	7	7	81	X	5270146	5270164	GGAACAGATCTCATCTGGA		58	5270207	5272344	TTCCATATACCTAGGGTAGTC		57	NA	
Drosophila melanogaster	50	CG3588	FBgn0025643	FBtr0070548,FBtr0100550,FBtr0070549,FBtr0070547	3	4	4	78	X	2815893	2815911	ATCTTCAGAATGGCTTCGG		59	2815953	2815971	AGATCCAAGTTGAGCAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14796	FBgn0025390	FBtr0070284	2	1	1	91	X	1448586	1448710	TCCACCTCAGATAAGAATACC		58	1448515	1448533	TGTTCTTGTTTCTGTGGTG		58	NA	
Drosophila melanogaster	50	CG2267	FBgn0039792	FBtr0085672	2	1	1	60	3R	26453845	26453863	AAATGTGAGCCACAAAGTG		58	26453803	26453821	TTGTCGTAAGCTTATTGGG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG7593	FBgn0039687	FBtr0085461	2	1	1	60	3R	25550495	25550513	CTCGAATCTCTGAGCTACC		58	25550453	25550474	AGATGAGTTTGAATTCCTCTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	LpR2	FBgn0051092	FBtr0113386,FBtr0113387,FBtr0113388	1	3	7	104	3R	21531749	21532018	GTCGAAGATCTGGGTATCC		58	21531663	21531681	ACTGTACCCATCTTGAGGT		59	NA	
Drosophila melanogaster	50	CG3744	FBgn0039240	FBtr0084726,FBtr0084725,FBtr0084727	2	3	3	85	3R	20700371	20700443	GATACAATTCTGGGCTGCT		59	20700304	20700322	GTTCTGTGGACAAATCTGC		59	NA	
Drosophila melanogaster	50	CG17838	FBgn0038826	FBtr0113256,FBtr0083960,FBtr0083963,FBtr0083958,FBtr0083961	3	5	8	85	3R	16624055	16624075	TCCTAGCATAATGTCCTTGAC		59	16624122	16631677	TACCGACTACGTATTCACG		58	NA	
Drosophila melanogaster	50	H	FBgn0001169	FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917	3	4	4	172	3R	16452160	16452178	GTAGTACCGACCAAATGTC		57	16452313	16452498	CAGATTCAGTGGTAAGTCTG		57	NA	
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642	3	13	13	131	3R	14261181	14261201	ATGTCAGATACTCAGAGATGC		59	14260763	14260781	TGTTATCTGTGAGACCACG		59	NA	DesignNoJunction
Drosophila melanogaster	50	fru	FBgn0004652	FBtr0083650	2	1	13	97	3R	14303853	14303874	GAAAGATACAGATACTTTGCCC		58	14261504	14303797	GTGTTGTACCTTGTCATTTCC		59	NA	InUTR
Drosophila melanogaster	50	Sap47	FBgn0013334	FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204	3	6	8	198	3R	11782022	11785052	GACTGATGAGGAACAATGG		57	11785214	11785232	CTCCCAATCGTTGTTAGTC		57	NA	
Drosophila melanogaster	50	Abi	FBgn0020510	FBtr0112896,FBtr0082910	1	2	2	97	3R	9946183	9946424	ATCAACAGGAATCACTTCAG		57	9946105	9946123	AAGTCTTGATGCTCATCCT		58	NA	
Drosophila melanogaster	50	CG9918	FBgn0038201	FBtr0100131	3	1	1	71	3R	9926421	9926528	ATAATGCAGAATCCGACGA		58	9926368	9926386	TTAGTTGACTTGGACACCG		59	NA	Nonspecific, DesignRelaxed
Drosophila melanogaster	50	CG14720	FBgn0037940	FBtr0082428	1	1	1	60	3R	7537744	7537764	CCCTATGGAGCATTATATCGT		58	7537786	7537804	TGTTCTCGATGACCATCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	pros	FBgn0004595	FBtr0089720,FBtr0089719,FBtr0089718	3	3	3	84	3R	7203836	7203854	TCAAGATGTACTTCCCGGA		59	7203900	7217259	TAGAATTCTCGGAAGTTCGAG		59	NA	
Drosophila melanogaster	50	CG33937	FBgn0053937	FBtr0091947,FBtr0091946	1	2	2	60	3R	5183234	5183252	AATAGATTCTCACTCGGCC		58	5183276	5183294	ACCGTCAACTGTACAACTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	HP1e	FBgn0037675	FBtr0082016	3	1	1	60	3R	5147703	5147722	CGATGAAGATAATACCTGGG		57	5147744	5147763	CGAATCAATAAGTGAATGGC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15594	FBgn0037421	FBtr0078604,FBtr0078603	1	2	2	60	3R	2113814	2113834	TACAACCATCGCTATAACGAG		59	2113853	2113874	GAGGATTCGGTTTGTAATTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Cpr78Cc	FBgn0037069	FBtr0078338	1	1	1	88	3L	21293913	21293931	CTACCAATACGCCTTCGAG		59	21293983	21294001	AGATGTAAGAGCTGCTTCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12983	FBgn0037040	FBtr0114618	2	1	4	94	3L	20959293	20959313	AACCATAGAAAGGGTACAGAG		58	20959154	20959240	CATTAGGAATCTTATCCAGCTC		58	NA	
Drosophila melanogaster	50	CG10738	FBgn0036368	FBtr0075805	1	1	2	132	3L	13458085	13458162	TCATCGCTATCACAGTGAC		59	13458258	13458276	AATACTTTGGCAGGACAGG		59	NA	
Drosophila melanogaster	50	ATPsyn-b	FBgn0019644	FBtr0076405	2	1	2	138	3L	9723626	9723644	GATCTACGTCATGGAGCAC		59	9723838	9723856	CTCCTTCCACTCAGATTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG32373	FBgn0052373	FBtr0076806,FBtr0076805	1	2	2	80	3L	7750857	7750940	CTGTAATGATATCGACGAGTG		58	7750980	7751000	CATATGAATTCACCAGGAAGG		58	NA	
Drosophila melanogaster	50	CG8596	FBgn0035767	FBtr0076881	2	1	1	82	3L	7336703	7336778	ACCTCAACAAGCTAGATCC		58	7336639	7336657	GAAGATCATTTGTCCCAGC		58	NA	
Drosophila melanogaster	50	CG34413	FBgn0085442	FBtr0112685,FBtr0112684,FBtr0112683,FBtr0112686	3	4	4	81	2R	20770530	20770605	CTTCCTGCAAGTGATAACG		58	20770649	20770668	AAAGTTCACTAGGATAGGCG		59	NA	
Drosophila melanogaster	50	CG11206	FBgn0034720	FBtr0113107	1	1	4	119	2R	18226396	18226414	CATCCTTCTCTGGTGACAC		59	18225407	18226313	AAATAAGGTATCGTGCGGG		59	NA	
Drosophila melanogaster	50	CG34123	FBgn0083959	FBtr0114580,FBtr0114579,FBtr0110833,FBtr0113485	3	4	6	80	2R	11152369	11152389	TATATGATTCTGGAGGGACTG		58	11152248	11152328	TATGGATACACCAATCTCGA		57	NA	
Drosophila melanogaster	50	Spt-I	FBgn0086532	FBtr0087731,FBtr0087729,FBtr0087730	1	3	3	88	2R	9057266	9057284	TCATCGACGAAAGCATCTC		59	9057336	9057409	ATCGACTTCATCACGATCG		59	NA	
Drosophila melanogaster	50	CG17574	FBgn0033777	FBtr0113077,FBtr0113078	1	2	4	131	2R	8744949	8744968	AATGTTGGCTACACAATCAG		58	8737633	8737651	AGTTACGTAGGCATTGCTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Galpha49B	FBgn0004435	FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835	2	6	8	109	2R	8504609	8504628	CTGCATATTTACCCACTGAG		58	8504697	8505312	GACGTCTACCATTCTAAATCTG		58	NA	
Drosophila melanogaster	50	CG18812	FBgn0042135	FBtr0088936,FBtr0088937,FBtr0088935	2	3	3	88	2R	3607185	3607203	CGAACAACTATCCATCGCT		59	3607049	3607068	GATATAGAAGGCCTTCAGGT		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG10188	FBgn0032796	FBtr0081282	1	1	2	149	2L	19506351	19507497	CACTGGAGGTATTTCGACC		59	19506220	19506240	TCCTTGGCTATAATTGAGCTC		59	NA	
Drosophila melanogaster	50	hk	FBgn0001202	FBtr0081180	2	1	1	78	2L	19032466	19032484	AACAAGATACCGATCTGCT		58	19032353	19032371	TTCAGTGTGGTCACTTCAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	bru-2	FBgn0043904	FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351	2	4	4	138	2L	12385726	12389193	ATTGGAGCTATAAAGGCCC		59	12389295	12389313	TATTGATGCCACAGAATGC		58	NA	
Drosophila melanogaster	50	Or33a	FBgn0026392	FBtr0080278	2	1	1	60	2L	11934889	11934907	TTGGTAGCTGCTATATCGG		58	11934928	11934949	GACCAGTACTAAATAAACCAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4988	FBgn0032372	FBtr0080254	3	1	1	60	2L	11695184	11695202	TAAACCTGACTAGGAACGT		57	11695312	11695330	TCGAATCCCAAGAATCCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6206	FBgn0027611	FBtr0080030	2	1	2	85	2L	10459504	10459886	GACAAGTTGATACGATATGGC		58	10459933	10459951	TTCAGATAGCACGATGGAG		58	NA	
Drosophila melanogaster	50	CG4995	FBgn0032219	FBtr0079989,FBtr0079990	2	2	3	240	2L	10322827	10323681	ATGATAAGGATCCCTACCG		57	10323953	10323971	TCTCTTTGCACTATCGTCC		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG31639	FBgn0051639	FBtr0079208,FBtr0079207	2	2	2	112	2L	6154021	6154656	AATTTAATACCAGCTCGGAC		57	6153928	6153946	GATTTCCATCTGCCTTTCC		58	NA	Nonspecific, DesignRelaxed, InUTR
Drosophila melanogaster	50	Rtnl1	FBgn0053113	FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039	1	7	7	111	2L	4994867	4994885	CTACTTGTCGCTCCTAACC		59	4994704	4994794	CTCCAGGTAATCCTTAAAGGG		59	NA	
Drosophila melanogaster	50	CG14621	FBgn0031183	FBtr0077344	2	1	1	155	X	21847816	21847899	AAAGGTTCTCAAGGACACC		59	21848371	21848392	GCAATAACTCGATAGTCTAGGT		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG11190	FBgn0030035	FBtr0071175	3	1	1	96	X	8300893	8300911	TAGTGGTTCGTCCATTGTC		59	8300607	8300835	TGGGTGTGGTAAAGATTATCC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG11596	FBgn0023522	FBtr0070318,FBtr0070320	2	2	3	175	X	1823042	1823060	TCCATTCGATGAAGCTGAC		59	1823198	1823290	TATCCTTCAGCTCGAAATCG		59	NA	
Drosophila melanogaster	50	CG40928	FBgn0085537	FBtr0113950	2	1	1	66	U	8956156	8956174	AGTGCCATTGATACCTCAC		59	8956204	8956306	ACTTAACTAGCCAATCCCA		57	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG40794	FBgn0085518	FBtr0113931	1	1	1	70	U	7804605	7806219	AAACGAGAACGAGAATCGT		59	7804553	7804571	ACAATCGATAGTGGCTCAG		59	NA	Nonspecific, DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1890	FBgn0039869	FBtr0085836	2	1	1	85	3R	27569554	27569627	GAGAAGACTGCAGAAGGAG		59	27569673	27569694	CCTTCTTATACGAATCTGTCTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG18410	FBgn0039226	FBtr0084741	1	1	1	250	3R	20625025	20625099	AAGAGTCCTGACAATGACC		58	20624248	20624266	CAATCAATCCCTTGATGGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG7518	FBgn0038108	FBtr0082697,FBtr0082696	1	2	2	100	3R	8825930	8826123	TGCTGACATACATTCTGGAC		59	8826186	8826204	GAACTTTCGCAGGAAATCG		59	NA	
Drosophila melanogaster	50	CG9427	FBgn0037721	FBtr0082104	2	1	1	110	3R	5451275	5451397	TGATCAGTGTGCCAATGAG		59	5451183	5451201	CTGTACTGTTTGGTCACCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12355	FBgn0040805	FBtr0075606	2	1	2	284	3L	15486663	15487040	CGTACAAATGGTTAGATCGC		59	15486260	15486281	CCCAAATCAATCCACAAATACC		59	NA	DesignNoJunction, InUTR
Drosophila melanogaster	50	CG9826	FBgn0034784	FBtr0071894	3	1	2	142	2R	18729517	18729535	CACCATTGGTAGTTCCCTG		59	18729641	18729740	GATTGTGCTTATCAGCCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Or49a	FBgn0033727	FBtr0087918	3	1	1	64	2R	8281978	8281996	CAGTTCTACGTTGTCAGCT		59	8282022	8282096	GCCTTGGCTAAATTTGTACTC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10859	FBgn0032520	FBtr0080522	3	1	1	125	2L	13396963	13396981	GATGGAACAATGCTAACCG		58	13396792	13396875	TATCTCCCGTTCAAACATCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG10399	FBgn0031877	FBtr0079351	1	1	1	142	2L	6960470	6960547	CTTGCACTTACAGCAAAGC		59	6960653	6960671	GACAATTGGTTGATCAGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	tRNA:CR32324	FBgn0052324	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me18S-A28a	FBgn0063386	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snoRNA:Me28S-G3255b	FBgn0082927	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	snmRNA:430:CR33740	FBgn0053740	-	0	0	0	0	-	0	0	-		0	0	0	-		0	NA	No primers
Drosophila melanogaster	50	CG41352	FBgn0083994	FBtr0111195	1	1	1	60	X	22319142	22319162	CAATAGCACAGGATCAAAGAC		59	22319183	22319202	GTTTACATTTCCCATTTGCC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG14615	FBgn0031184	FBtr0077369	3	1	1	62	X	21849845	21849863	ATTGTCGCTACTAACTGGC		59	21849801	21849819	CAGATCTTTCTGGTACCCG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12565	FBgn0031180	FBtr0077214,FBtr0077215	3	2	2	197	X	21312772	21313457	ACTGCATTGATCTTACCGT		58	21312593	21312612	GCTTGAAACCGATACATACC		58	NA	
Drosophila melanogaster	50	waw	FBgn0024182	FBtr0100536	1	1	1	80	X	21241685	21241706	TTCCTCATATTCTGCAAGAGAC		59	21241746	21241835	TATCTTTGTAATGGCACGGT		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	Pros45	FBgn0020369	FBtr0077189	1	1	1	60	X	21187422	21187585	ATGCTAAAGTTCGGATGCT		59	21187609	21187627	ACATAGCTACCCTGTTCCT		59	NA	DesignRelaxed
Drosophila melanogaster	50	Nat1	FBgn0031020	FBtr0074711	1	1	1	126	X	19376302	19376320	TACGCCAACACTCATTGAG		59	19376410	19376494	ATTGATGTAGCGATCTGCC		59	NA	
Drosophila melanogaster	50	kek5	FBgn0031016	FBtr0074707,FBtr0074708	3	2	2	200	X	19360066	19360084	CTTCCAAGATGGACAAGAC		57	19360248	19362351	AGTGATTGGCCACATAGAC		59	NA	DesignRelaxed
Drosophila melanogaster	50	Cyp18a1	FBgn0010383	FBtr0074609,FBtr0074610	3	2	2	161	X	18584105	18584123	TTGAGGATCTGCAGTACCT		59	18583526	18583544	TATTGATCAGCGGGATGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	GalNAc-T2	FBgn0030930	FBtr0074624,FBtr0074625	2	2	2	175	X	18392027	18392045	GGTCATCAGGAACAAGGAG		59	18391428	18391446	TAATGGGCACTGTCATCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	os	FBgn0004956	FBtr0112847	2	1	2	129	X	18201371	18201389	ATCGACTATCGCAACTTCG		59	18201185	18201278	TCAGCTGATTGAAGCTCTG		59	NA	Nonspecific
Drosophila melanogaster	50	wupA	FBgn0004028	FBtr0074521	3	1	7	86	X	18000953	18005980	GGATTATGAGATCAACGATCTC		58	18000823	18000843	TATTTGGAGACCTTCTTCAGG		59	NA	
Drosophila melanogaster	50	CG8142	FBgn0030871	FBtr0074472	3	1	1	267	X	17737803	17737821	TGATCTGTTCGAGATGTCG		59	17737492	17737510	GATCTGCAGATACTCGGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG12986	FBgn0030868	FBtr0074474	3	1	1	297	X	17713595	17713613	TGTGAGCATCTTTATCGCT		59	17713316	17713334	GAATATCCTCAGGCGATGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG8326	FBgn0030851	FBtr0074486	2	1	1	68	X	17523089	17523107	GTAACATCAAGCAGTTCGC		59	17523039	17523057	CATTGGTCATGCGATTCAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4829	FBgn0030796	FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337	1	5	5	90	X	16718725	16718743	GAAGGGATACCATGTGTCG		59	16718794	16718964	CAAATAGATTTGGTACTGCTCG		59	NA	
Drosophila melanogaster	50	CG9911	FBgn0030734	FBtr0074243,FBtr0074241,FBtr0074242,FBtr0074244	1	4	4	80	X	16188807	16188825	AAATCTGAAGGAAGACTGC		57	16188675	16188763	ATGATAGGTGTACCTGGTG		58	NA	
Drosophila melanogaster	50	CG32576	FBgn0052576	FBtr0100556	1	1	2	166	X	16182013	16182032	CGGCATGATTATTGAATCCT		58	16180125	16180143	ATACTGTAGTTCGGTTGCC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG8117	FBgn0030663	FBtr0074050	2	1	1	67	X	15538637	15538655	TTCAGGACTCGATCAATGC		59	15538686	15538704	GCATTTGAACTGATCCGTC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG33177	FBgn0053177	FBtr0073962	3	1	1	75	X	14975706	14975725	TCGTTATGTCACTACTCACC		58	14975763	14975781	CTCAGGCGTAAATCCTCTG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9512	FBgn0030593	FBtr0073979	3	1	1	141	X	14798009	14798027	ATTGGTTCACCTCAGATCC		58	14796866	14796884	CGATCTGGAAGATCATCGG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG10993	FBgn0030524	FBtr0073837	1	1	1	60	X	13684595	13684613	CTCACTGTGGATCATGGAG		59	13684553	13684571	CATGAGTTCGTTTAGACGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG9940	FBgn0030512	FBtr0073844,FBtr0073845	1	2	2	80	X	13580649	13580669	GACATTAATCCTATTGGTGGG		58	13580523	13580607	GGGCAGGTTGAATTTATCC		58	NA	
Drosophila melanogaster	50	CkIalpha	FBgn0015024	FBtr0073680,FBtr0073682,FBtr0073681	1	3	3	81	X	12550119	12550138	TGAACTATTGTCGTAGCCTG		59	12550182	12550381	GTTCTGAACAGTATGCGGA		59	NA	
Drosophila melanogaster	50	m	FBgn0002577	FBtr0073555	2	1	1	116	X	11661126	11661212	ATTATCGAGGCGAATTCGA		58	11661292	11661310	GTGAGATCATCTTGGGTCG		59	NA	
Drosophila melanogaster	50	Or10a	FBgn0030298	FBtr0073548	1	1	1	90	X	11310697	11310715	TATTTCGAGTTCTGTGCCC		59	11310566	11310643	CCAAGTGATCAGTGTAGGG		59	NA	
Drosophila melanogaster	50	CG1597	FBgn0030289	FBtr0073458	3	1	1	60	X	11241106	11241126	CATAAATCCTATCTCAGCACG		58	11241066	11241084	AGAAGAGCGTATCCTTGAG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG15199	FBgn0030270	FBtr0073473	1	1	1	85	X	11034834	11034852	CACCGATGACTATCTGCTG		59	11034706	11034724	CATAGTCGTTGGGTGAGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG2202	FBgn0030240	FBtr0073380	3	1	1	96	X	10744987	10745005	GATCTCAAGGTCCATGAGC		59	10745152	10745170	GGATCGTTAGATTGTACGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17255	FBgn0030205	FBtr0071461,FBtr0071460	1	2	2	60	X	10365931	10365952	CACAGCGTTAGATATAAATCGC		59	10365796	10365814	AGATGGTTCACTTGACTCG		59	NA	DesignNoJunction
Drosophila melanogaster	50	Or9a	FBgn0030204	FBtr0071462	3	1	1	87	X	10353105	10353123	CGTTTACCCGTACGATCTC		59	10352961	10353056	CATGGTTACAGCACTATAGCT		59	NA	
Drosophila melanogaster	50	CG15313	FBgn0030173	FBtr0071418	2	1	1	77	X	9944240	9944258	TGATCGTTCATGGTCATGG		59	9944298	9944317	TAAACTTCCTGCAGTTGAGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG12065	FBgn0030052	FBtr0071217,FBtr0071215,FBtr0071214,FBtr0071216	1	4	4	95	X	8481474	8481494	ACTACACGGACTATAAGAAGC		59	8481550	8481631	GTTTCTCCTTGCTATTGCTG		59	NA	
Drosophila melanogaster	50	Ubc-E2H	FBgn0029996	FBtr0071114,FBtr0071112,FBtr0071113	1	3	3	62	X	7983587	7983605	GCGTTGTACGATCTATCGA		59	7983543	7983561	ATTGGGATATGTGAGCAGC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpS6	FBgn0004922	FBtr0071136,FBtr0071137,FBtr0071135	2	3	3	102	X	7794175	7794193	TGAAGAAGGGTGAGAAGGA		59	7794091	7794109	CTCAAGTTGTAGAGCTTGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4593	FBgn0029929	FBtr0071009	1	1	1	123	X	6908179	6908197	AGACAATCGACGACATACC		59	6908284	6908302	TTCAGATTCTCCCACATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	RpL35	FBgn0029785	FBtr0070800,FBtr0070801	1	2	2	110	X	5567099	5567117	CAAGAATGAGTTGCTCAGC		59	5567273	5567291	ATCACAATGTAGACGCGAG		59	NA	DesignNoJunction
Drosophila melanogaster	50	rg	FBgn0086911	FBtr0110993,FBtr0070745	3	2	2	80	X	5118235	5118253	ACCTCAATGAAGGTCAAGG		59	5118295	5118403	GGCAATCATATACCACTTTCG		59	NA	
Drosophila melanogaster	50	CG15912	FBgn0029712	FBtr0070677	2	1	1	60	X	4443602	4443621	ATTCTGACTTCCTACGAAGC		59	4443644	4443662	GCGGAATTTCGAAGATACC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4199	FBgn0025628	FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333	2	4	6	110	X	1965424	1965442	CAAGGAGTACAAGACCACG		59	1962396	1962414	GACATGGTTGTACTGGGAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG14635	FBgn0029535	FBtr0070142	2	1	1	87	X	738956	738974	GAATATCGCTGACCTGGAC		59	739024	739043	CTGTGGCATAGAAAGATCGT		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	2	8	8	61	X	551358	551376	GGATGATGAGAGCAAGGAG		59	551401	551419	TTAGGAAATCTGCATCCCA		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	skpA	FBgn0025637	FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129	1	8	8	60	X	551391	551410	CATTATCTCATGGGATGCAG		58	551433	551451	TATCAGCTCAAACAGTGTG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG4293	FBgn0024983	FBtr0100475,FBtr0070089,FBtr0100476	3	3	4	74	X	423463	423481	CAGAGAAGTACACGGAGAC		59	423349	423367	CCAGGTAAACGATCAACAG		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG17626	FBgn0040032	FBtr0113755	3	1	2	139	U	251367	251441	AAAGCGCAGAATAGAATGC		58	251544	251607	CTTTGTGAAGGTGGTTGTG		59	NA	DesignRelaxed
Drosophila melanogaster	50	Caps	FBgn0053653	FBtr0091630,FBtr0091631	1	2	3	99	4	1259634	1259655	GACATGGATAGAGTCTTATCAG		57	1259714	1265686	GCAAATTGTCATCAGTTCTC		57	NA	
Drosophila melanogaster	50	Hcf	FBgn0039904	FBtr0089124,FBtr0089126,FBtr0089127,FBtr0089125	3	4	4	99	4	381551	381570	GCGATAAACATCAAAGAGCT		58	381630	382947	CGTACCACTGATTAGTAACAG		57	NA	
Drosophila melanogaster	50	yellow-h	FBgn0039896	FBtr0089115	3	1	1	83	4	250188	250546	AAGTTTCAAGGAGTTCATGG		58	250592	250610	TACTTGGCGTACTCTTGAG		58	NA	
Drosophila melanogaster	50	Crk	FBgn0024811	FBtr0089114	1	1	3	170	4	231301	232282	TGATCAAATCGTTTACCGC		58	232416	232493	AAATCATCTTGATCGCTGC		58	NA	
Drosophila melanogaster	50	CG2316	FBgn0039890	FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146	2	7	7	83	4	208987	209060	CGGATCATAGACTTACGGA		57	208922	208940	CGAAGCATGGTTTAGTCAG		58	NA	
Drosophila melanogaster	50	CG32000	FBgn0052000	FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451	3	4	8	101	4	159114	159132	AAGCGGCTAAAGACTAGTG		59	159195	160910	CGTAAGAGTACCAGTCTTGTC		59	NA	
Drosophila melanogaster	50	iab-4	FBgn0020546	FBtr0083363,FBtr0083362	2	2	2	86	3R	12677154	12677172	CTGAGGAGTGGACAATGAC		59	12681556	12681574	AGACGTGTCCTTCTATTCC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CR33328	FBgn0053328	FBtr0082858	1	1	1	64	3R	9464688	9464707	CAGTAGAGCCACTATATCCA		57	9464643	9464661	GATTGCCTGATTGATTGCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	heph	FBgn0011224	FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881	3	14	14	110	3R	27690344	27690864	TAAATGAGGAGATGGTCACG		59	27683628	27683646	TTTGTATGAGTGCCGAGTC		59	NA	
Drosophila melanogaster	50	Gprk2	FBgn0004834	FBtr0085788	1	1	1	117	3R	27279200	27279218	GCTACGTGATAGATCAGCA		58	27279299	27279381	ATCTCGTATTTGACCACCT		57	NA	
Drosophila melanogaster	50	spn-F	FBgn0086362	FBtr0085760	1	1	1	60	3R	27081859	27081878	AGAACTATGAGAGCCAACAC		59	27081900	27081919	ATGTTAATTCTCTGGCTGGG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG1746	FBgn0039830	FBtr0085773,FBtr0085774,FBtr0085772	1	3	3	206	3R	27043629	27043647	AGTACTTGCGACCATTGAG		59	27042879	27042897	ATACTGTTCCGATACCAGC		58	NA	DesignNoJunction
Drosophila melanogaster	50	Fer2LCH	FBgn0015221	FBtr0085622,FBtr0085623	3	2	3	94	3R	26214617	26214931	CACTGGAATAAACCGTCGA		59	26214987	26215007	GCAATATTCATCATCCTTGGC		59	NA	InUTR
Drosophila melanogaster	50	CG9682	FBgn0039760	FBtr0085617	3	1	1	96	3R	26077020	26077038	GAGGTCATCCAATATGGCC		59	26077157	26077175	CATCCATTCCAAGTTCCCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG34299	FBgn0085328	FBtr0112495	1	1	1	101	3R	26075488	26075506	CAGTGGAAAGGAATCCAGG		59	26075630	26075999	GGGTCTTCTAAATTGGATTTGC		59	NA	
Drosophila melanogaster	50	CG31028	FBgn0051028	FBtr0085578,FBtr0085577	1	2	2	80	3R	25994097	25994175	ATATTACATCCATAGGACACCC		58	25994038	25994059	GGATTCCAGTGACCATATAGAG		59	NA	
Drosophila melanogaster	50	ATPsyn-gamma	FBgn0020235	FBtr0085541,FBtr0085540,FBtr0085539	1	3	3	68	3R	25574077	25574095	CAACACTAAGGTGTTCTGC		58	25574027	25574045	ATGTTCTTGCCGTACAGAC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	ppk21	FBgn0039675	FBtr0085448	2	1	1	93	3R	25491239	25491259	GAATATCAGTTCACAGAAGCC		58	25491311	25491400	GGTAATATTTGTCTTCCCTAGC		58	NA	
Drosophila melanogaster	50	SP1029	FBgn0040282	FBtr0085400,FBtr0085398,FBtr0085399	1	3	3	105	3R	25071030	25071112	TACAAGTTCTACCATCCGC		59	25070943	25070961	TCACGAAGTCCTTGAACTC		59	NA	
Drosophila melanogaster	50	CG11899	FBgn0014427	FBtr0085390	2	1	1	181	3R	25026878	25026896	AGTTTGGCGTTATCTATGC		57	25027041	25027115	CACATAGATGCCAAAGGTC		58	NA	
Drosophila melanogaster	50	CG11898	FBgn0039645	FBtr0085388	1	1	1	295	3R	24995771	24995789	TATCGATCATACCGCAGGA		59	24996048	24996562	GATGAGATTGTCGGTCTCG		59	NA	DesignRelaxed
Drosophila melanogaster	50	CG10011	FBgn0039590	FBtr0085319	3	1	1	101	3R	24435946	24435964	CATCTCTAGTCAGTCCACG		58	24435800	24435818	ATCAGATTATTGCGTGAGC		57	NA	DesignNoJunction
Drosophila melanogaster	50	CG12428	FBgn0039543	FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236	2	5	5	149	3R	23529755	23529773	ATCCGATGTACACCAAGAG		58	23529568	23529642	TAATGAACACAGCTTCCGA		58	NA	
Drosophila melanogaster	50	CG5612	FBgn0039529	FBtr0085200	2	1	1	80	3R	23449689	23449776	ATACTCGATCACTATGCCA		57	23449627	23449647	ACTCGTATAGTGACTGTACTC		58	NA	
Drosophila melanogaster	50	CG14259	FBgn0039483	FBtr0085104	1	1	1	78	3R	22920754	22920772	CAATCTGACTGACCTGGTG		59	22920936	22920956	GCTAAAGTCTTTCTTGCTCAC		59	NA	DesignNoJunction
Drosophila melanogaster	50	Rb97D	FBgn0004903	FBtr0100339,FBtr0085093	1	2	9	159	3R	22699713	22699731	TCAACCACCAGCATATACG		59	22699391	22699591	CAAAGAGCATCCAATCTAGC		58	NA	InUTR
Drosophila melanogaster	50	CG8932	FBgn0039390	FBtr0084944	2	1	1	109	3R	21736611	21736629	CATCGTCATCTATGTGCCA		59	21737020	21737038	AATTCCGCTGAATAACCAC		58	NA	DesignNoJunction
Drosophila melanogaster	50	CG4685	FBgn0039349	FBtr0100571,FBtr0084891,FBtr0100570,FBtr0100569	1	4	4	192	3R	21452227	21452245	GATTCCAGCAATGCAAAGG		59	21451877	21452071	GTTTGTGCCACTTCTTGAG		59	NA	Nonspecific
Drosophila melanogaster	50	CG11858	FBgn0039305	FBtr0084815	2	1	1	77	3R	21088906	21088924	AACAATCCCGTGTACACAG		59	21088965	21088983	TCATTTCTTTCCCTCCACC		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Esp	FBgn0013953	FBtr0084703	2	1	1	265	3R	20673093	20673950	TTATACTCACTGAAGACGGC		59	20674178	20674266	ATACAAGCCATAGGCTACG		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG33658	FBgn0053658	FBtr0091637	3	1	1	90	3R	20666498	20666516	AAAGTCCAATGTAGTCGCC		59	20666375	20666446	TATAATGTCGTGGTTGTACGG		59	NA	
Drosophila melanogaster	50	CG33658	FBgn0053658	FBtr0091637	1	1	1	88	3R	20666498	20666516	AAAGTCCAATGTAGTCGCC		59	20666377	20666446	TAATGTCGTGGTTGTACGG		59	NA	
Drosophila melanogaster	50	CG34150	FBgn0083986	FBtr0111021	1	1	1	60	3R	20640338	20640446	AAAGAGGATGGTACAACGC		59	20640470	20640488	TTTCGATAATTGCGTCAGG		58	NA	DesignRelaxed
Drosophila melanogaster	50	jar	FBgn0011225	FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173	2	4	6	86	3R	20079843	20080373	CCCAAACAAATTGATCAGATCC		59	20079778	20079797	TACTTCCACTTGGACAAGTC		59	NA	
Drosophila melanogaster	50	CG6182	FBgn0039158	FBtr0084551	1	1	1	81	3R	19988340	19988358	AAGGACATAAGGTCCTCGA		59	19988403	19988477	CGTCAAGATCCTTTACCGT		59	NA	
Drosophila melanogaster	50	4EHP	FBgn0053100	FBtr0084587	2	1	1	81	3R	19890044	19932557	CGAAATATCCGGAGGATAGC		59	19889982	19890000	AACGTATCACGGATACGTG		59	NA	
Drosophila melanogaster	50	CG31451	FBgn0051451	FBtr0084500	2	1	1	106	3R	19809898	19809916	CTATCATCCCAGATTGCGT		59	19809986	19810004	CTAATCGATCCAGTGAACG		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG6784	FBgn0039074	FBtr0084411,FBtr0084412	1	2	2	61	3R	19198919	19198937	GGAACAGTACGAAAGGGAG		59	19199028	19199046	ATTCCGAACTTTGAAGGCA		59	NA	DesignNoJunction
Drosophila melanogaster	50	CG6726	FBgn0039049	FBtr0084349,FBtr0084348	1	2	2	92	3R	18918259	18918330	GACTCTTTGGCATCTTCGT		59	18918386	18918404	ACATAGTTCAGCTTCTCGC		59	NA	
Drosophila melanogaster	50	CG7029	FBgn0039026	FBtr0084312,FBtr0113270,FBtr0113271,FBtr0113269	3	4	4	93	3R	18614228	18614308	ATAGTTTCTATGCGGATCCC		59	18614364	18614382	TTGCGTTTCACTATGTCCT		59	NA	
Drosophila melanogaster	50	CG13409	FBgn0038926	FBtr0113264	1	1	2	122	3R	17856452	17856547	CATTGTCATATGCTGGTATGC		59	17856350	17856368	GTGAAACACCTACTGTCGT		59	NA	
Drosophila melanogaster	50	Caki	FBgn0013759	FBtr0084161,FBtr0084163,FBtr0112872,FBtr0112873,FBtr0084162	2	5	5	80	3R	17612578	17612663	AACATAGCAGATTACGACG		57	17612516	17612534	GAAGAAGTGACCGTATAGC		57	NA	
Drosophila melanogaster	50	burs	FBgn0038901	FBtr0084131	2	1	1	106	3R	17595582	17595658	TTATATCCAGGTTTCGGGC		59	17595728	17595746	CTTTGGGACAGAATAGCGA		59	NA	
Drosophila melanogaster	50	E2f	FBgn0011766	FBtr0084118,FBtr0084119,FBtr0084117	1	3	3	201	3R	17449734	17449752	AGATCAACGTCTTCCTCTG		58	17449364	17449569	GGCGTTTGAAATAATCCCT		58	NA	DesignRelaxed
Drosophila melanogaster	50	CG7956	FBgn0038890	FBtr0100124,FBtr0110891,FBtr0084112	2	3	3	92	3R	17350158	17350177	TGAAATCTCCGTTTATGGTG		57	17350229	17350313	GAGTATAGTCTCCCTTTAATGC		57	NA	
Drosophila melanogaster	50	CG6475	FBgn0038886	FBtr0113260	2	1	1	113	3R	17224250	17224388	TAGTTTGGGATCTCAAGTGC		59	17224156	17224175	TGATCATCCTCGAATTTCCA		58	NA	
Drosophila melanogaster	50	Rlip	FBgn0026056	FBtr0084002	3	1	1	77	3R	16844668	16844686	GTCTCACCGACTAATGGTG		59	16844726	16845175	GGCACATACTTTATCAGCTG		58	NA	DesignRelaxed
Drosophila melanogaster	50	Calx	FBgn0013995	FBtr0083999,FBtr0084000,FBtr0083998	1	3	3	146	3R	16838011	16838032	CTTTGTGGTATCCATATTCGTG		59	16838138	16838225	GCGAATGTATCTGGTATGCT		59	NA	
Drosophila melanogaster	50	CG5191	FBgn0038803	FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905	1	5	5	101	3R	16396364	16396823	GTCGACAGGTAAATCCTCTG		59	16396887	16396905	TAATGCCCATCGCTATCAC		59	NA	InUTR
Drosophila melanogaster	50	CG4973	FBgn0038772	FBtr0083835	3	1	1	99	3R	15884377	15884398	TACCAAGTATGAGATTCACTCC		59	15884458	15884543	GTGCTTGCACTTTGTTACC		59	NA	
Drosophila melanogaster	50	CG31219	FBgn0051219	FBtr0113400,FBtr0083783	3	2	2	60	3R	15477517	15477535	GATATCGCCCTCTTACGAC		59	15477670	15477689	ATATTGGCATGATTCCTGTC		57	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	PP2AB	FBgn0042693	FBtr0083553,FBtr0083552	1	2	5	80	3R	13995749	13995767	GTAGAAGGAGTAGCTCCAG		58	13995811	13997259	TTTGTTAGCCAAACTGCTC		58	NA	
Drosophila melanogaster	50	CG7215	FBgn0038571	FBtr0100283	1	1	1	105	3R	13991872	13992085	ATGGTGAAAGTAGGAGACTC		58	13991786	13991804	AGATGATCACCTTCTTGCC		59	NA	Nonspecific, InUTR
Drosophila melanogaster	50	tinc	FBgn0038554	FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769	3	4	4	114	3R	13691908	13692611	CTTCCTAGCAGCTCTTGTC		59	13692689	13692707	GTAAGTGCTGTCCAATGGA		59	NA	
Drosophila melanogaster	50	Atg8b	FBgn0038539	FBtr0083533	3	1	1	84	3R	13550370	13550388	TAAACAATGTGATCCCACC		57	13550304	13550325	GAAATGTAGAGGAAGTAGTCCT		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	alt	FBgn0038535	FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416	1	6	6	163	3R	13500932	13500950	TAGCAACCACAATAGCACC		59	13500724	13500805	ATGTGTTTGTCGTCTTGGT		59	NA	
Drosophila melanogaster	50	CG33333	FBgn0053333	FBtr0083441	2	1	1	262	3R	13243369	13243387	CTTACGGTCAAGACCAAGG		59	13243611	13243631	GTACACATTTCCTTGACTAGC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	sds22	FBgn0028992	FBtr0083436	2	1	1	60	3R	13218200	13218218	GCAAAGATCGAGAACTTGG		58	13218242	13218260	GATTGGCCTGTAGACTGAG		59	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31418	FBgn0051418	FBtr0083432	2	1	1	60	3R	13109648	13109666	CTCCAGGAAACAGTACTGC		59	13109690	13109708	GTTGACTTGCACTTAGACG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31267	FBgn0051267	FBtr0083404	1	1	1	60	3R	12960452	12960470	GGAGGATATCGTCATGCAC		59	12960494	12960512	CAGGGCAATGTCATTATGG		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	CG31269	FBgn0051269	FBtr0113401	3	1	1	60	3R	12953383	12953401	ATACCTTCAGTACGTTCCC		58	12953425	12953443	ACAATCTTCATCGTTGCTC		58	NA	DesignNoJunctionSingleExon
Drosophila melanogaster	50	Ubx	FBgn0003944	FBtr0083351,FBtr0083350,FBtr0083347,FBtr0083349	1	4	6	93	3R	12484785	12536291	CTGGCTAGGTACAAATGGT		58	12484710	12484728	ATGATTCGTGTGGAACTCC		59	NA	
Drosophila melanogaster	50	CG12753	FBgn0038427	FBtr0083315,FBtr0100643	3	2	2	80	3R	12266239	12266258	TTTCAGTAATCTGGTCTGGT		58	12266117	12266199	GATTGATGGTCTATATCTGTGC		58	NA	
Drosophila melanogaster	50	CG4287	FBgn0038388	FBtr0083240	1	1	1	60	3R	11788874	1178889