Organism name Ensembl version Gene name Gene Ensembl ID Transcript Ensembl IDs Rank Number of transcripts covered Total number of transcript Amplicon lenght Chromosome Fwd primer start Fwd primer stop Fwd primer sequence # of SNPs in Fwd primer Fwd primer Tm Rev primer start Rev primer stop Rev primer sequence # of SNPs in Rev primer Rev primer Tm Ensembl status Warnings Drosophila melanogaster 50 snoRNA:Me18S-A425 FBgn0086056 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR32329 FBgn0052329 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-4 FBgn0046821 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CR11700 FBgn0029856 FBtr0070931 3 1 1 60 X 6176780 6176798 AGTCGACCATTTACTTGGT 58 6176738 6176757 AGGGTCTTCACAAAGATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR32493 FBgn0052493 FBtr0070533 2 1 1 60 X 3321532 3321551 TATGGTGTAACGGTTAGCAC 59 3321491 3321509 TACCGAGATTTGAACTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14617 FBgn0031191 FBtr0100652,FBtr0100651,FBtr0077352 3 3 5 129 X 21887458 21887783 GATTGCTTCAACAGCTCTG 59 21887875 21887894 TGTTTGAGGAGTAGTTTGGT 58 NA Drosophila melanogaster 50 CG14619 FBgn0031187 FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350 3 5 5 124 X 21868684 21868703 TTATGAACTCGGTCATCCAG 59 21868790 21868868 GAGTTTGGCAAATTCGTGG 59 NA Drosophila melanogaster 50 Cyp6t1 FBgn0031182 FBtr0077212 3 1 1 60 X 21389411 21389431 CTTCACCATGTTCTTCTTTCC 59 21389371 21389389 TTCGGAGTAAAGATGGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210 2 5 8 86 X 21247686 21250626 ACATGACGCTTATGAAATGG 58 21250675 21250693 CAAAGTGGCCATAGAAGGT 59 NA Drosophila melanogaster 50 CG14579 FBgn0031163 FBtr0077256 3 1 1 60 X 21064635 21064653 AGCCTAGGCTTTCTTATCC 58 21064677 21064695 GTTGCAACAGATTGAAGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34120 FBgn0083956 FBtr0110827 2 1 2 80 X 21004909 21004927 ATCAAGCCGATTATCCAGG 59 21004969 21005056 GGCATTACTAAACTTCACCAC 59 NA Drosophila melanogaster 50 CG1529 FBgn0031144 FBtr0114624,FBtr0077267 3 2 2 114 X 20901407 20901425 AAGTCAGTGCAAGCTAGAG 59 20901311 20901329 GTAGTCATGGAAATGCCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pp4-19C FBgn0023177 FBtr0077324,FBtr0077325 2 2 2 143 X 20293018 20293100 CAATTACTGCTATCGCTGC 59 20292893 20292911 TAGAGAAAGTAGTCCGCCT 59 NA Drosophila melanogaster 50 CG12655 FBgn0031080 FBtr0070036 2 1 1 60 X 19852737 19852755 CAATGGAGCCTACTACGTG 59 19852695 19852714 GTTGTTGTAGGAGAAGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdc42 FBgn0010341 FBtr0074751,FBtr0074752 2 2 2 64 X 19592047 19592066 GCTCATCTCGTATACAACCA 59 19592093 19592111 CATAGTTGTCGAACACCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tao-1 FBgn0031030 FBtr0074771,FBtr0074772 1 2 4 193 X 19470238 19470256 TGGACAACCTCAATTACCG 59 19469994 19470081 TGAGGAGCTCTGACTACTG 59 NA Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074573,FBtr0074575,FBtr0074574 1 3 6 162 X 18301908 18302558 CCTACCAATGCGAGATGAG 59 18286878 18286897 GTGTAGTCCATATCGAAGCC 59 NA Drosophila melanogaster 50 crl FBgn0015374 FBtr0074283 2 1 1 106 X 16488191 16488209 CAACTTCTTCGAGTGGGAG 59 16488362 16488380 GACTCAGAGGATAGTCGGT 59 NA DesignNoJunction Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 1 7 7 80 X 16273085 16273103 TTTGGTTATGCATGAGCAC 58 16273145 16273233 CAGAAGGCACATTTGTTATCC 59 NA Drosophila melanogaster 50 Graf FBgn0030685 FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197 2 6 6 81 X 15646356 15646434 TAACCAATGTTCGTTACTCC 57 15646294 15646312 TAGTTCTCCGGAATGAGTC 58 NA Drosophila melanogaster 50 CG9053 FBgn0030606 FBtr0073969,FBtr0073968 3 2 2 62 X 14959721 14959739 CAACCACTGGTCTATGGTG 59 14959677 14959695 ATGAACACCTGGATGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eo FBgn0030597 FBtr0073975 2 1 1 60 X 14812031 14812049 TGTACCACGGATGAAACAG 59 14811989 14812008 GACATGATGAGTGTAACCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5321 FBgn0030575 FBtr0073934 3 1 1 60 X 14574474 14574492 CGCATAGTAGTCGATTGGA 58 14574515 14574534 AAATGTTGTGGAACTCTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32599 FBgn0052599 FBtr0073904 3 1 1 264 X 14138036 14138054 AATCTCAACGAGATCCTCG 58 14139878 14139896 TGTTCTTTAGCGTCACCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Ste:CG33236 FBgn0053236 FBtr0073873 1 1 1 60 X 13955227 13955246 GTATTTCAGCGAGATACTGG 57 13955186 13955204 CAAGCCAGAGGAACTATCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11178 FBgn0030499 FBtr0073805,FBtr0073804 2 2 2 237 X 13502355 13502441 AAACTAGCACAAACCATGC 58 13502642 13502660 TAACTGAGATCTCTTGGGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12723 FBgn0030459 FBtr0073738 3 1 1 153 X 13084523 13084542 AAATACCACAATTTCCCGGA 59 13084389 13084407 AATTGGCTAGTTGGTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1463 FBgn0030406 FBtr0073657 1 1 1 83 X 12504733 12504751 CACCAGGAGGATATGAAGC 59 12504614 12504632 TTCCTGGTTTGGTTACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 regucalcin FBgn0030362 FBtr0073576,FBtr0073578,FBtr0073577,FBtr0073575 2 4 4 101 X 11910740 11910816 CAAGGTTAATCCCAACACTG 58 11910880 11910898 TACAGGATGTCCAAGTTGG 58 NA Drosophila melanogaster 50 tsg FBgn0003865 FBtr0073582 2 1 1 67 X 11882397 11882415 CTATCGATGGTTCCACGAC 59 11882348 11882368 CGTTGATTCCATAATTGAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15221 FBgn0030331 FBtr0112979 1 1 1 181 X 11628579 11628597 AACATCTGGATGCTGATCG 59 11628742 11628832 ATACCAATCGCCATAGCTG 59 NA Nonspecific Drosophila melanogaster 50 CG1657 FBgn0030286 FBtr0073448 1 1 1 96 X 11227172 11227265 ATCATCAACTGCATCTCGA 58 11227325 11227343 CTACGTATATGAGCACGGG 59 NA Drosophila melanogaster 50 CG2898 FBgn0030195 FBtr0071445 1 1 1 60 X 10269622 10269640 CGTCAACAGTCTACCACTG 59 10269662 10269682 GATTCGTTATTACAGCACAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9686 FBgn0030158 FBtr0071389 2 1 1 117 X 9773985 9774003 GAATAGCTTGCAAGGATCG 58 9774084 9774102 CTTATCGCTCACATCTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gga FBgn0030141 FBtr0071363 1 1 1 105 X 9496624 9496642 GAGCTATACAAGAGCTGCA 59 9496780 9496798 AATTGGCATCCAGAGTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9034 FBgn0040931 FBtr0071343 1 1 1 111 X 9053728 9053746 AACTACTATGCCAAGGACG 59 9053635 9053653 TCCTCTAGTCATCCTCGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 rdgA FBgn0085373 FBtr0112551 1 1 3 92 X 8917821 8918117 GGATTCAGCCCTATACTGG 58 8918296 8918314 TTGTTCATGTAGTGCACGT 59 NA Drosophila melanogaster 50 CG15347 FBgn0030040 FBtr0071242 1 1 1 146 X 8354799 8354817 TTGGCCTACATCAGTTGTG 59 8353189 8353261 AATTGTGTAGCCATCCAGG 59 NA Nonspecific Drosophila melanogaster 50 CG2278 FBgn0030017 FBtr0071185 3 1 1 91 X 8062922 8063011 AATGGTTACTTCGGTTCCA 58 8062849 8062868 TAGGAATAGTCCGGATACGA 58 NA Drosophila melanogaster 50 fs(1)h FBgn0004656 FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119 1 5 5 116 X 7944306 7944477 CAAGAAAGATGAGTCCGCT 59 7944208 7944226 CTCGAACTGCTATCACTCG 59 NA Drosophila melanogaster 50 CG9650 FBgn0029939 FBtr0112959,FBtr0112957 1 2 6 121 X 7126488 7126507 TAAGTTCATCCAGCACAAGG 59 7126591 7126954 TTGTCGTTCTAAGGCTGAG 59 NA Drosophila melanogaster 50 CG3168 FBgn0029896 FBtr0070986,FBtr0070985,FBtr0070984 1 3 3 89 X 6617448 6617466 CTTCTCGCAGACATACTCG 59 6616690 6616708 AAGTACGACCAGATCACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3198 FBgn0029887 FBtr0070991 2 1 1 104 X 6566654 6566672 CACTCCTACGATAGCAGAC 58 6566202 6566302 TTTATGGTGATGGTGACGT 58 NA Drosophila melanogaster 50 CG15894 FBgn0029864 FBtr0112955,FBtr0070901 3 2 2 81 X 6219970 6219988 GTCAGATAGCCATACCCAG 58 6220094 6220113 GTGCCAGAACTATAGCTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Act5C FBgn0000042 FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822 3 4 4 153 X 5797300 5797318 GATGAAGATCCTGACCGAG 59 5797435 5797453 GTAGGACTTCTCCAACGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16721 FBgn0029820 FBtr0070821 2 1 1 81 X 5775890 5775972 GTTCCATGGAAATGTTGGT 58 5776017 5776035 AATGGTCTCATCATCGCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 l(1)G0060 FBgn0027321 FBtr0070842,FBtr0070841 2 2 2 60 X 5637846 5637866 ACAATCATACTCTTCCTGGTG 59 5637806 5637824 CATTCACATACGCCTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sirt4 FBgn0029783 FBtr0070850 2 1 3 94 X 5559765 5559783 ACTTTCTCCTGTCCAAACC 59 5559506 5559647 GTAATCGGGAATCCAAGCT 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG6927 FBgn0029733 FBtr0070721 2 1 1 60 X 4801966 4801984 CTGCTGACATTCATTACCC 58 4802008 4802026 TGTAGCTAACCTTTGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4865 FBgn0026085 FBtr0070642 2 1 1 60 X 4008743 4008762 GGAGAATGGTATGGAGATGG 59 4008785 4008803 GAGAAGATCCTCCACAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6428 FBgn0029689 FBtr0070625 2 1 1 86 X 3861489 3861507 ATCTCGGAATATACACCGC 59 3861362 3861440 GTACGATTGCTGAATATCGC 59 NA Drosophila melanogaster 50 CG3603 FBgn0029648 FBtr0070558 2 1 1 61 X 2842482 2842500 CTGGAATAACCCGAGATGG 59 2842524 2842543 GTATACGTCATCGTAGTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10260 FBgn0040335 FBtr0070443 1 1 1 124 X 2526307 2526387 ATAATCCGAACTCCCAGGA 59 2526475 2526493 GAAGATGGTGATCACCTGG 59 NA Drosophila melanogaster 50 trol FBgn0001402 FBtr0112811 2 1 7 128 X 2385514 2385533 TGGAGATTCCCAACATTAGG 59 2384861 2385355 ATCCAACGTCGTTATAGCG 59 NA Drosophila melanogaster 50 CG3091 FBgn0029608 FBtr0070416,FBtr0100226 2 2 2 61 X 2146958 2146976 CTTCCTAAGGGAGGAAGTC 58 2146860 2146878 AAAGGCTATCCATACCCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Nmd3 FBgn0023542 FBtr0070425 3 1 1 63 X 2077149 2077167 TACCACGAGTTTCTTGACG 59 2077104 2077123 GATAGATGTTGACCTGACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3630 FBgn0023540 FBtr0070385 3 1 1 182 X 2065005 2065023 AACATCCACGTGATGAAGG 59 2065237 2065256 GTCTACCAACTTGTGTTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Unc-76 FBgn0040395 FBtr0070376,FBtr0070377 2 2 2 83 X 1985850 1985868 ACTTGACCACAGTCATTCC 59 1985913 1986003 CCTTGAGAATCTTGATCAGGA 59 NA Drosophila melanogaster 50 Actn FBgn0000667 FBtr0070343,FBtr0070345 3 2 3 83 X 1924299 1924320 CTGGAGAATCTTAATACTGCCT 59 1923949 1924258 GTTGATCAAATCATCTGGATCC 59 NA Drosophila melanogaster 50 Actn FBgn0000667 FBtr0070343,FBtr0070345 1 2 3 80 X 1924296 1924317 GAGAATCTTAATACTGCCTTCG 58 1923949 1924258 GTTGATCAAATCATCTGGATCC 59 NA Drosophila melanogaster 50 CG14809 FBgn0040898 FBtr0070276 1 1 1 60 X 1651144 1651162 GATGATGGGATCATCCAGC 59 1651102 1651120 AATGTCATTGTTGTCGCTC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 fz3 FBgn0027343 FBtr0112928,FBtr0070138 2 2 2 60 X 676831 676849 CGAGAGCTACAGAAATCGG 59 676872 676891 TTGATTCATCAGGGATGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18273 FBgn0029525 FBtr0070094 1 1 1 89 X 378404 378422 AGGACAATGGAAAGCAGAG 59 378270 378352 GATAGTTCAACGAGTGACCA 59 NA Drosophila melanogaster 50 CG17636 FBgn0025837 FBtr0112921 3 1 1 122 X 21786 21890 AAGTTACAATGTTCGATGGG 58 21683 21701 GGTTCCATTACATTCAGCA 57 NA Drosophila melanogaster 50 CG40955 FBgn0085544 FBtr0113957 3 1 1 86 U 9989963 9989981 CGAGTCATCGATCCATCAG 59 9989895 9989913 ATTCCTAGCCAAAGCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40820 FBgn0085523 FBtr0113936 2 1 1 61 U 7043597 7043615 GACTTTATCGCCTACTGCT 59 7043554 7043572 ACCCTAGTCTGAGTGTAGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40682 FBgn0085508 FBtr0113921 2 1 1 141 U 5709303 5709321 GAAGTTATCCGAGGAGCAG 59 5709426 5709444 TTGCTTATCTTGTTCGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41229 FBgn0085561 FBtr0114004 2 1 1 157 U 2151597 2151615 TTGGCGTTAAGTTATTGCG 59 2151736 2151754 ATACATACGTGGTCAACGT 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11077 FBgn0039930 FBtr0089222 3 1 1 60 4 1049497 1049516 CCTATCTATATTGGTCCGCA 58 1049456 1049475 TCTGAAGTTTAGCATCTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 myoglianin FBgn0026199 FBtr0089093,FBtr0089092,FBtr0089095,FBtr0089094 2 4 4 86 4 714058 714079 CCTATTAATACCAACGATGAGG 58 713456 714011 ATGAGGTTGAATTTCCTCG 57 NA Drosophila melanogaster 50 CG31999 FBgn0051999 FBtr0089144 1 1 1 80 4 244621 244639 CTGATGAAGGTGAATTGCC 58 244501 244577 CACATATGTCATCATCGCC 58 NA Drosophila melanogaster 50 Crk FBgn0024811 FBtr0089112,FBtr0089114,FBtr0089113 2 3 3 166 4 232269 232287 AAATCGTTTACCGCATTGG 59 232416 232494 TAAATCATCTTGATCGCTGC 58 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156 2 9 10 80 4 103363 106347 CCTAAGATGGGCTTAACTCG 59 106387 106408 CATATCTGAACTTAGCATTGGG 58 NA Drosophila melanogaster 50 CG31008 FBgn0051008 FBtr0085748 3 1 1 73 3R 26815408 26815427 ATTTAGTCGAAGAAGGTCCT 58 26815354 26815372 GAGATCGTCATTGTCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12071 FBgn0039808 FBtr0085717 3 1 2 133 3R 26704771 26704869 CCCTATATTTGTGAAGTGTGC 59 26704658 26704677 TTCTTCACCATGTTGTTCAG 58 NA Drosophila melanogaster 50 CG15545 FBgn0039806 FBtr0085719 1 1 1 60 3R 26697687 26697705 AAGAAGAGCCACTACAGAC 58 26697562 26697580 AATTGTAGCGTTGTTCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Jon99Ciii FBgn0003357 FBtr0085502 1 1 1 60 3R 25748502 25748520 ATGTCCAGATCATTTCCCA 58 25748544 25748562 ATCATGTTGTCGTGGAGAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7802 FBgn0039704 FBtr0085486,FBtr0085485 1 2 2 80 3R 25648463 25648548 GAAATTGTGACAGGATACGTC 59 25648590 25648608 GCAATCAGTGAGCATTAGC 59 NA Drosophila melanogaster 50 CG1973 FBgn0039692 FBtr0085477 2 1 1 194 3R 25577542 25577561 CTTTAACTGGACGCAATCTG 59 25577782 25577870 CCTGAGAGGTATCCATTTCG 59 NA Drosophila melanogaster 50 CG7598 FBgn0039689 FBtr0085473 3 1 1 60 3R 25563621 25563642 AATAGACTATGTGGGTTTGGAG 59 25563663 25563681 CATTTCGTAGGCGAATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2010 FBgn0039667 FBtr0085428,FBtr0085427 1 2 2 119 3R 25323843 25323862 TAAGTTTATACAGCGCCAGG 59 25323944 25324030 ACAATGATCTTGCAGTTGC 59 NA Nonspecific Drosophila melanogaster 50 CG11882 FBgn0039642 FBtr0085411 2 1 1 62 3R 24973014 24973034 CACATCGACATGAGATTTGAG 59 24972972 24972990 CTCGAAGTTGTCCAGTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Doa FBgn0053553 FBtr0110913,FBtr0110912,FBtr0091524,FBtr0091527,FBtr0091526,FBtr0113466,FBtr0091525,FBtr0091523 2 8 9 80 3R 24745225 24745243 CGTCATTCAAGATGATGCT 57 24745285 24745962 GTGGCCATGATCTTATATCTG 58 NA Drosophila melanogaster 50 Hrb98DE FBgn0001215 FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301 3 4 6 95 3R 24429337 24429355 CAATCAAGGCAACTATGGC 59 24429413 24429794 TTACTTTATCACCTCGTCCG 59 NA InUTR Drosophila melanogaster 50 Hrb98DE FBgn0001215 FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301 1 4 6 94 3R 24429337 24429355 CAATCAAGGCAACTATGGC 59 24429413 24429793 TACTTTATCACCTCGTCCG 58 NA InUTR Drosophila melanogaster 50 CG5508 FBgn0027579 FBtr0085251,FBtr0085249,FBtr0085250 3 3 3 76 3R 23757321 23757339 ATATGCCTGTGACCTACTC 58 23757442 23757460 CAGCCTTAATCACCAAACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3368 FBgn0039508 FBtr0085163 3 1 1 74 3R 23111715 23111736 AGTACTTACTGATGAGCTTCTG 59 23111829 23111847 ATTGGTAACACCCAATGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG18766 FBgn0042111 FBtr0085122,FBtr0085123 3 2 2 96 3R 23069043 23069061 CTTACCATCCACATCCGAG 59 23068903 23068985 GTACTCGGTCTTATAGAACCC 59 NA Drosophila melanogaster 50 CG17192 FBgn0039472 FBtr0085153 2 1 1 60 3R 22843605 22843623 CCGATAGCATGAATGTCGA 59 22843563 22843581 ATCACGTTAAAGTCTCCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6478 FBgn0039436 FBtr0085057 3 1 1 263 3R 22449011 22449031 TATCAGTGGTGGATCTATTGG 58 22448768 22448786 AATTCCTTCTGGAGCTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5959 FBgn0039387 FBtr0084940 2 1 1 60 3R 21723789 21723809 GAGTGCATATGCATAGAACTC 58 21723828 21723849 AAAGGATACTGGGTAATGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lnk FBgn0028717 FBtr0084937,FBtr0084935,FBtr0084936 3 3 3 110 3R 21717658 21717678 AATGGCTACGATAATGGTCAG 59 21717750 21718182 CACTTCGTTGCAATGTCTC 59 NA Drosophila melanogaster 50 CG12250 FBgn0039345 FBtr0084895 2 1 2 91 3R 21419368 21419386 TTCCTACACTGCCAATTCG 59 21419241 21419314 TGAACCTCATGAACTTGAGG 59 NA Drosophila melanogaster 50 CG10559 FBgn0039323 FBtr0084854 3 1 1 97 3R 21140548 21140665 AAATATGGACGAGTTGTGCT 59 21140470 21140490 ATAGCCAACTTTAGACCATCG 59 NA Drosophila melanogaster 50 CG10550 FBgn0039321 FBtr0084857,FBtr0084858 3 2 3 155 3R 21133346 21133424 TATACTGCTGAAGGATGGC 58 21133209 21133227 TAAAGCTTTACGAACTGCG 58 NA Nonspecific Drosophila melanogaster 50 CG13653 FBgn0039288 FBtr0084804 3 1 1 60 3R 21021800 21021819 TCATTCTATCTGAAGCACGG 59 21021842 21021860 CAAGATCGGGATAATCGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13634 FBgn0039224 FBtr0084742 3 1 1 60 3R 20615231 20615249 CCTACCAGTTGTACCACAG 59 20615189 20615207 TTGTAGAAGTCATCCTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syx18 FBgn0039212 FBtr0084670 1 1 1 60 3R 20450760 20450779 GGAACAGATCTATCTGGACC 58 20450719 20450738 CCTATAGGTTTCCAGTTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5669 FBgn0039169 FBtr0084565 2 1 1 60 3R 20050914 20050932 CAATCTTCAGGCTTTACCC 58 20050872 20050891 GTGAATGATTTGCACTTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10694 FBgn0039147 FBtr0084542 1 1 1 60 3R 19933621 19933639 CCTCAGGAGGTTGTTTCAG 59 19933663 19933681 GATCACTTGTCTGTACGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tbp-1 FBgn0028684 FBtr0084452 1 1 1 198 3R 19579348 19579366 GATACAGGAGCTCATCGAG 59 19579585 19579603 GAACATTTGCACCAACTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG16710 FBgn0039101 FBtr0084438 3 1 1 89 3R 19509028 19509046 AAGCATAGGCACTACATGG 59 19509098 19509255 CAACTTATGGTTGCGTACTG 59 NA Drosophila melanogaster 50 beat-IV FBgn0039089 FBtr0084433 3 1 1 175 3R 19400148 19401765 ATGGACATTGTGTTTCTGC 58 19404302 19404320 TATTTGTGCAGGTAGTGCT 58 NA Drosophila melanogaster 50 CG10175 FBgn0039084 FBtr0084423,FBtr0084421 3 2 3 104 3R 19350706 19351230 AAGATCTCTGCGGAAAGAG 59 19350620 19350638 CTATAGTAGCCTCCTCGCT 59 NA Drosophila melanogaster 50 ATPsyn-Cf6 FBgn0016119 FBtr0084432 2 1 1 130 3R 19181434 19181452 GTAACTTCGGAATCGTTGC 59 19181258 19181276 AATATCGGGATTGGAGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 cnc FBgn0000338 FBtr0084397,FBtr0084394,FBtr0084392,FBtr0084395,FBtr0084396,FBtr0084393 2 6 7 68 3R 19013518 19013609 ATGTCTTCCAGTACCTACG 58 19013468 19013486 CCTGTTGCAAACTGTAGTC 58 NA DesignRelaxed Drosophila melanogaster 50 loco FBgn0020278 FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273 2 4 4 86 3R 18446567 18446653 AGCACCAAGATGAACTACTC 59 18446500 18446518 AGTCGAAGTTGATTTCGGT 59 NA Drosophila melanogaster 50 CG7045 FBgn0038978 FBtr0084258 3 1 1 92 3R 18317925 18317944 TCAAATACTAACCAATGCCC 57 18317999 18318017 CCTGGTCTTTGATAAGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cchl FBgn0038925 FBtr0084185 1 1 1 144 3R 17852267 17852285 GAGGTACTTAAGTGGGAGG 58 17852084 17852102 AGTCATGCCTATCGAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 mRpL35 FBgn0038923 FBtr0084171 1 1 1 60 3R 17849867 17849886 CTATAAGCCCTATCACAGCC 59 17849907 17849927 CACCTTAAAGGTCTTTGACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 1 22 22 84 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202454 17202549 TTCAGGAATACGATAGCGT 58 NA Drosophila melanogaster 50 CG5874 FBgn0038872 FBtr0084051 1 1 1 81 3R 17054078 17054159 CTCTATCGAACGAACACGT 59 17054204 17054222 ATAAGGGCTTTGTCAGGTC 59 NA Drosophila melanogaster 50 Stat92E FBgn0016917 FBtr0089486,FBtr0089485,FBtr0089487 3 3 5 81 3R 16367270 16367415 GAAGACAGGATAATGTCCGA 58 16367208 16367228 GATCTTCGTTGAACTTTAGGG 58 NA Drosophila melanogaster 50 CG4538 FBgn0038745 FBtr0083855,FBtr0083856 3 2 2 92 3R 15725521 15725606 GCTCTATAATGGAACAACTGC 59 15725449 15725467 CTTTAACATAGTCGGCGGT 59 NA Drosophila melanogaster 50 nos FBgn0002962 FBtr0083732 2 1 1 72 3R 14984678 14984696 TACAAGCGTTACAACAGCA 59 14984803 14984823 CTGGTTCGTTGTTATTCTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11779 FBgn0038683 FBtr0083750,FBtr0100549,FBtr0083749,FBtr0100548 2 4 4 78 3R 14981616 14981634 TCATGAGCGATAGTGATCG 59 14981489 14981508 TAGAACTTGGAGTCCTTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 Cyp12a5 FBgn0038680 FBtr0083730 2 1 1 85 3R 14959528 14959548 GAGAAACTACTGAAGGTTGAC 58 14959595 14959665 GTGCTCGAAGTAGTATCCA 58 NA Drosophila melanogaster 50 fru FBgn0004652 FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642 2 13 13 132 3R 14261181 14261201 ATGTCAGATACTCAGAGATGC 59 14260762 14260781 TTGTTATCTGTGAGACCACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7215 FBgn0038571 FBtr0100283 3 1 1 144 3R 13992107 13992125 AATCATTTCACTGCGATCC 58 13991787 13991805 GATGATCACCTTCTTGCCA 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 sr FBgn0003499 FBtr0083543,FBtr0083542 3 2 2 63 3R 13953324 13953342 ATATTCCCTCGTTCTTCGG 58 13953369 13956126 TCGATGGAACCAGTAATGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG34279 FBgn0085308 FBtr0112474,FBtr0112475 3 2 2 91 3R 13228451 13228647 TACCAGAAGGATTATCGCA 57 13228378 13228397 ATATTTCGCCACTAGATGTC 57 NA InUTR Drosophila melanogaster 50 Patr-1 FBgn0028470 FBtr0083392 3 1 1 91 3R 12872439 12872458 ACTTTCGAACTCCTAGTGAG 58 12872512 12872586 GAAAGGATTCCAAAGCGAC 59 NA Drosophila melanogaster 50 gish FBgn0011253 FBtr0083265,FBtr0083263 1 2 8 81 3R 12118544 12121396 TTAGGATCACATGCAGAGG 58 12121441 12121459 GCAACTCCATAACAAGAGC 58 NA Drosophila melanogaster 50 Acyp2 FBgn0038363 FBtr0083174 3 1 1 164 3R 11618599 11618617 TTCGAGATCTTTGGACGAG 59 11618867 11618944 CAGCCAATGTTTCATTTCCA 59 NA Nonspecific Drosophila melanogaster 50 c(3)G FBgn0000246 FBtr0083196,FBtr0083195,FBtr0083194 3 3 3 110 3R 11617460 11617478 AACATTACGACAAGGAGCT 58 11617297 11617386 TATTATTCAGCTCTTGCGC 57 NA Drosophila melanogaster 50 Hsc70-4 FBgn0001219 FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056 1 6 6 61 3R 11071531 11071549 GGTATCCTCAACGTGACTG 59 11071571 11071592 GTAATGGTGATCTTGTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7530 FBgn0038256 FBtr0083020,FBtr0083021,FBtr0083019 1 3 3 103 3R 10551833 10551851 TTCAACCCGTACATTCGTC 59 10551639 10551767 CTCCAGATGTTGATCGTCTC 59 NA Drosophila melanogaster 50 Art6 FBgn0038189 FBtr0082878 2 1 1 60 3R 9771259 9771278 GTGCCAGTAAAGTTATAGCC 58 9771218 9771238 ATTATCTCCTCGGCTATATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rin FBgn0015778 FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082796 2 4 5 60 3R 9476209 9476538 CAACAAGGGTGACTTTGAG 58 9476562 9476580 CTGATTATCACCGAACTGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG31157 FBgn0051157 FBtr0113394 3 1 1 183 3R 8873475 8873493 ATATCGTCGCGTTATGGTC 59 8873640 8873736 TCAAAGGTAACAGACCAGC 59 NA Drosophila melanogaster 50 CtBP FBgn0020496 FBtr0082701,FBtr0082702,FBtr0082699,FBtr0082700,FBtr0100161 3 5 5 80 3R 8845523 8845622 AAATACACGAGAAGGTCCT 57 8845665 8845684 TCTCAAGATCCTCCTTTGTC 58 NA Drosophila melanogaster 50 CG7381 FBgn0038098 FBtr0082727,FBtr0082726,FBtr0082725 1 3 3 80 3R 8795258 8795366 CGATGAGAAGAAGTATGGC 57 8795196 8795215 TTCTTGGAACAAATCGAGTG 58 NA Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 2 15 15 121 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811941 7812031 TTCTTCAGGATGTTGGAGG 58 NA Drosophila melanogaster 50 CG6790 FBgn0037915 FBtr0082460 1 1 1 60 3R 7402820 7402840 CACCTAAGATGGATTGTAGGA 58 7402780 7402799 GACAGTTGCAGTAAATCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6783 FBgn0037913 FBtr0100320 3 1 3 101 3R 7390430 7390520 ATCATTCATCTTTCGGCGT 59 7390347 7390366 TAGTCAGGGTGTAGGTATCG 59 NA Drosophila melanogaster 50 Irbp FBgn0011774 FBtr0082385 2 1 1 61 3R 7237185 7237203 TTCAAGCATCGATCCTCTC 59 7237228 7237246 GGGTACATGAAATTCGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33630 FBgn0053630 FBtr0091607 1 1 1 60 3R 5888835 5888855 ACTACTCGCTTCTAAATTCCG 59 5888877 5888895 CCATTCTGGACTCCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34302 FBgn0085331 FBtr0112498 2 1 1 60 3R 5648962 5648982 GAAGTCAATGAGGACTATTGG 58 5648922 5648940 GAAACATCAGCATGTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16908 FBgn0037741 FBtr0082166 1 1 1 98 3R 5577208 5577284 AGCCTTAGTGATGTGATACC 58 5577129 5577147 TTTGTACTCCTGAGTCTGC 58 NA Drosophila melanogaster 50 unc-115 FBgn0037733 FBtr0082095,FBtr0082094 1 2 4 108 3R 5515793 5516164 TTAGCGAGATGTACATCCG 58 5515557 5515575 TACTCCCGGAGTATCAGAC 59 NA Nonspecific Drosophila melanogaster 50 CG9444 FBgn0037730 FBtr0082099 1 1 1 80 3R 5508101 5508120 CTACACAATGCAGTTGTAGC 59 5507980 5508061 GATAAACAGCTTGGATATCCTC 58 NA Drosophila melanogaster 50 pyd FBgn0003177 FBtr0089782,FBtr0089781,FBtr0114459 1 3 8 81 3R 4660660 4661006 CATATACGGTACCCTACGAC 58 4660598 4660616 TAGATGCTGTACTTGCTGG 59 NA Drosophila melanogaster 50 Mcm2 FBgn0014861 FBtr0081827 2 1 1 60 3R 4092516 4092536 ATCAGGGAGTTTGTCTAATCG 59 4092557 4092576 ATAGAGGTACGATCCTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hph FBgn0086689 FBtr0078782,FBtr0078781,FBtr0078780 1 3 3 110 3R 1092744 1092852 TGACCAATCAGATTGACTCTG 59 1092985 1093003 GATAACAAGCGACCATTGC 59 NA Drosophila melanogaster 50 CG14662 FBgn0037291 FBtr0078846 1 1 1 60 3R 809608 809628 CCGATAATAGTGAGGATTCCA 58 809568 809587 TAGCCAGATATAATGAGCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31522 FBgn0051522 FBtr0078941,FBtr0078939 1 2 4 125 3R 272159 272177 GGTTGTATTTAGCGCATGG 59 270274 271061 GCATGAACCATCCTTAACG 58 NA Drosophila melanogaster 50 eIF3-S10 FBgn0037249 FBtr0111110 3 1 2 114 3R 257831 258358 CATCCAGATATCTATTTCGGCA 59 257738 257757 TATTAACCAACTGAGAGCGG 59 NA Drosophila melanogaster 50 CG11739 FBgn0037239 FBtr0078915,FBtr0078913,FBtr0078916,FBtr0078914 2 4 4 80 3R 205702 205720 CAATCAGACATTCAACGCC 59 205764 205845 GAGGTAACTAGTTGCTGCT 58 NA Drosophila melanogaster 50 CG12581 FBgn0037213 FBtr0078961,FBtr0078962 2 2 2 106 3R 8593 8611 GACTCCGGTAATTCTGGTG 59 9470 9488 TCTTGACGTATGGAGTAGC 58 NA DesignNoJunction Drosophila melanogaster 50 snoRNA:Me28S-A576 FBgn0086080 FBtr0114356 1 1 1 62 3L 17559236 17559254 GATGAGGCCAAGTATTCGT 59 17559192 17559210 ATGCATACTTTCGAATCCC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-1837c FBgn0082994 FBtr0113607 1 1 1 73 3L 5757107 5757125 CAGAGATCAACAGTGTCGA 59 5757052 5757070 GGACAACTTTAAAGACCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 msopa FBgn0004414 FBtr0078482 2 1 1 215 3L 22075935 22075953 GAACTTCATACAGATCGCC 57 22076132 22076150 TTCTTTCTACCGGAACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11248 FBgn0037117 FBtr0078430,FBtr0078431 2 2 2 146 3L 21675714 21675788 CTACAAGAAGCTCGTTCAG 57 21675898 21675916 TTCATATCAGACTGGCAGG 58 NA Drosophila melanogaster 50 CG33283 FBgn0053283 FBtr0078285 2 1 1 83 3L 20972307 20972326 GCACGTGGCATATTATACCT 59 20972372 20972475 CTTGGACCACTTCTCTTCC 59 NA Drosophila melanogaster 50 Pitslre FBgn0016696 FBtr0078250,FBtr0078247 1 2 4 80 3L 20769084 20769102 CGAATTCTTGCAGATGCTG 59 20769143 20769284 GTTCCCAATTCCTTAAAGATCC 59 NA Drosophila melanogaster 50 polo FBgn0003124 FBtr0100318,FBtr0074839 1 2 2 141 3L 20305703 20305789 TCTGTGCAGCTAAACTTCTC 59 20305893 20305911 ACAAGTCTTTAGACACGCC 59 NA Drosophila melanogaster 50 CG14183 FBgn0036931 FBtr0074907 3 1 1 81 3L 20019235 20019253 AGGAATGGGTTACTGAGGA 59 20019124 20019192 TACTCAACCCTCATGTATTCG 59 NA Drosophila melanogaster 50 CG9472 FBgn0036874 FBtr0074982 3 1 1 60 3L 19479204 19479222 GAAGTATCGCCTGATTACC 57 19479162 19479180 GAAGTAAACCAGGAACAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32206 FBgn0052206 FBtr0089795,FBtr0089796 2 2 2 83 3L 19374588 19378509 GACATTGTGCAGATTATCTTCG 59 19374526 19374544 TTCGTAACCATCCACATCC 59 NA Drosophila melanogaster 50 CG14073 FBgn0036814 FBtr0075084,FBtr0075085 2 2 2 80 3L 18796820 18796939 GGAGATATTTGATGCTAAGGAG 58 18796761 18796779 AGAGCTCTGCTCATATCAC 58 NA Drosophila melanogaster 50 grim FBgn0015946 FBtr0075130 2 1 1 76 3L 18296841 18296859 TATCCTTCGAGATCAGCAG 58 18296783 18296801 TTAGTTCTCCTTGGAGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp74F FBgn0036769 FBtr0075154,FBtr0075155 2 2 2 93 3L 17886316 17886411 TTTGTGATATTCGTGGGTG 57 17886241 17886259 GATTTGTACCGAGCAACTC 58 NA Drosophila melanogaster 50 Eip74EF FBgn0000567 FBtr0075202,FBtr0075203,FBtr0100411,FBtr0075204 1 4 4 216 3L 17557950 17558464 CACAACAGGTTCATTTCCG 59 17557752 17557773 GTTCTGGTATAAATTCGGATGC 59 NA DesignRelaxed Drosophila melanogaster 50 Oatp74D FBgn0036732 FBtr0075173 2 1 1 80 3L 17494563 17500728 CACGCCTAACAGAAATACAC 58 17500769 17500789 TAGATTGGTTGATCTGGTCTG 59 NA InUTR Drosophila melanogaster 50 CG7630 FBgn0040793 FBtr0075217 3 1 1 221 3L 17418703 17418721 TAAGCACATTGTCAAGCAG 58 17419174 17419252 CCAGAAGATTTCACGAATCC 58 NA DesignRelaxed Drosophila melanogaster 50 rogdi FBgn0036697 FBtr0075283,FBtr0075282 1 2 2 85 3L 17045161 17045179 AGTTCATACTCACCGTGTC 59 17045228 17045832 AAAGCTAATGTCAGCCTGG 59 NA Drosophila melanogaster 50 Baldspot FBgn0036650 FBtr0075355,FBtr0075356 2 2 2 86 3L 16652387 16652406 ACATGGGTGTTCTACTACTG 58 16644626 16652338 CAATTGGAATCTAGGCCGA 59 NA Drosophila melanogaster 50 CG13033 FBgn0036638 FBtr0075400 2 1 1 61 3L 16538211 16538229 CCTGAACCATGTCCTTCAG 59 16538168 16538186 GCAAGTACTCGTTGTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13065 FBgn0036590 FBtr0075468 2 1 1 97 3L 16270982 16271000 CTACAAGTCGGCATATCCT 58 16271061 16271079 TTTACCATCCATGAGCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13053 FBgn0040801 FBtr0075480 2 1 1 120 3L 16252433 16252518 TTATCTCTGGTTAGCAGTGC 59 16252332 16252350 GTAGTAGGATTCTGGCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0112852,FBtr0112851,FBtr0075438,FBtr0075439 2 4 6 100 3L 16057085 16057333 GTCCCACTAATAATCAAGTTCC 58 16057394 16057412 ATCGTTCTCAAAGCTTTGC 59 NA Drosophila melanogaster 50 CG7255 FBgn0036493 FBtr0110881,FBtr0100360 3 2 3 145 3L 15301806 15301827 GCTCGTCGTAGATTATTTAGAG 58 15301932 15302036 AGAAATACGGGTATACCCAC 58 NA Drosophila melanogaster 50 CG16959 FBgn0036481 FBtr0075655,FBtr0075656 3 2 2 238 3L 15114504 15115738 GGATCAGGTCAAGAGAACC 59 15114284 15114302 CATAGCAAGACTCCTCTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6650 FBgn0036402 FBtr0075769 2 1 1 81 3L 14025984 14026061 CACATGTCTAGAAAGCTGC 58 14026106 14026124 GATGGATGTCATCGTTTGG 58 NA Drosophila melanogaster 50 CG8833 FBgn0036386 FBtr0075792 3 1 1 93 3L 13920553 13920571 AAACTGAACTAGCCAAGGA 58 13920420 13920496 GAATTCATAGCAGAAGGCA 57 NA Drosophila melanogaster 50 CG14119 FBgn0036322 FBtr0075869 3 1 1 62 3L 12885121 12885139 TTATGGATCGAATGGAGCT 58 12885163 12885183 GTAGTGTACGTATTGTAGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rols FBgn0041096 FBtr0076055,FBtr0076057,FBtr0076053 3 3 5 169 3L 12006171 12006189 TTAACCACAAGAATCTGCG 58 12005820 12006038 ATGAGTATGATCTCCCGAC 57 NA Drosophila melanogaster 50 Sug FBgn0036191 FBtr0076109,FBtr0076110 2 2 2 121 3L 11681142 11681160 CTCCTATGCAAGCATTGTG 58 11681306 11681324 ACTCAAATAGCTGTCCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14145 FBgn0036118 FBtr0076202 3 1 1 60 3L 11055017 11055036 GAATCTGAATACTTCGACCA 57 11055059 11055077 CATCATCGGAGCTAATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32081 FBgn0052081 FBtr0076198 1 1 1 80 3L 11020803 11020880 TCACCCGATATCTGATATTGG 58 11020919 11020940 GATAATGGAATGGCCATAACTC 58 NA Drosophila melanogaster 50 simj FBgn0010762 FBtr0076262,FBtr0076263 2 2 3 121 3L 10681691 10681791 TTTAGAGCTTTGGGACAAGG 59 10681875 10682038 TTATTGTTGAAGGCTGCCA 59 NA Drosophila melanogaster 50 CG14160 FBgn0036066 FBtr0076316,FBtr0113160 2 2 2 115 3L 10081982 10082003 CAACCATAATACCCACAATCTG 59 10081408 10081906 CACTGGAGGTATATGCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG10809 FBgn0036052 FBtr0076366 1 1 1 298 3L 9851661 9851679 TCATCTTACGCTACATGGT 58 9851107 9851125 CTTGTCACAATGCCAACTC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385 3 8 8 114 3L 9825956 9826035 GAGTTAACCGGGACTACAC 59 9826112 9826131 AGTCTTTCCCAAACTTAGCC 59 NA InUTR Drosophila melanogaster 50 CG14168 FBgn0036044 FBtr0076374 1 1 1 145 3L 9786741 9786759 TCTACTTGCCCGATTTACC 59 9786487 9786632 CTTTGGGAAGATCCCAAGG 59 NA Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326 1 11 11 88 3L 9773789 9773875 CCTCATGAGATCTTTGTGC 58 9773927 9773945 TCATACTTGATCCAACGGG 59 NA Drosophila melanogaster 50 smg FBgn0016070 FBtr0076549,FBtr0076550,FBtr0076551 1 3 3 132 3L 8986300 8986318 CAGTCAACTCAAGGACCTG 59 8986129 8986205 CTTACCATTCCATCTTGGCT 59 NA Drosophila melanogaster 50 CG5288 FBgn0035950 FBtr0076553,FBtr0076555,FBtr0076554 2 3 3 81 3L 8977959 8977978 GCTTCAACTCAGAAATCTCG 58 8977752 8977915 CTTTGGAAGCTCGATTCTG 58 NA Drosophila melanogaster 50 Tsp66E FBgn0035936 FBtr0076507,FBtr0076508,FBtr0076506 3 3 3 85 3L 8919887 8921127 GCATTGAGCAATTTACACAG 58 8921175 8921193 GCTCATGAAGAACATGACG 58 NA Drosophila melanogaster 50 CG8044 FBgn0035829 FBtr0076765,FBtr0076764 1 2 2 138 3L 7968997 7969015 ATCAAGTCGTCGACTTCTC 59 7968877 7968895 AATTCATGATGGAACTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RNaseX25 FBgn0010406 FBtr0076752 3 1 1 60 3L 7964291 7964309 GGAGTTCTGGACCATTCAC 59 7964333 7964351 GAAATTCGGTCCCATTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14837 FBgn0035797 FBtr0076825 1 1 2 166 3L 7551793 7552322 ATAATAACAAGCCACACGC 58 7551645 7551663 GTGAAGACCCTCCATTACC 59 NA Drosophila melanogaster 50 bhr FBgn0082598 FBtr0076849,FBtr0076848 2 2 2 72 3L 7365559 7365578 GATGCCTTTGTCAAGTTCAC 59 7365613 7365692 TTTACGACAGGTAGCTAGG 58 NA DesignRelaxed Drosophila melanogaster 50 form3 FBgn0053556 FBtr0091533,FBtr0113469 3 2 2 253 3L 7112367 7112446 GTGCCCAATTACAAATTGC 58 7112663 7112681 TTATTCGCCCGGATATCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG10077 FBgn0035720 FBtr0076940 1 1 2 172 3L 6944502 6944523 GATCAACTACGATTATCCTTCG 58 6944287 6944369 GTTTGGGATTGATGGTCTG 58 NA Drosophila melanogaster 50 sfl FBgn0020251 FBtr0076968 3 1 1 83 3L 6539444 6540359 TTCTATCAGGTCATAACGGC 59 6540405 6540423 ATACTTGCCGGGATTTAGG 59 NA Drosophila melanogaster 50 CG32415 FBgn0052415 FBtr0077111 3 1 1 60 3L 5798203 5798221 ACAGGCCATGTATGTATCC 58 5798245 5798263 CGTCAACCGATTATAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1135 FBgn0035489 FBtr0073202 1 1 1 290 3L 4041686 4041763 TTAAGAGCTCGGAACAACC 59 4042017 4042035 TATTACGTTTGTTGCGACG 58 NA DesignRelaxed Drosophila melanogaster 50 CG11505 FBgn0035424 FBtr0073046,FBtr0073047,FBtr0073045 3 3 3 96 3L 3231784 3231917 GCCAAAGAGAAAGATAATCGTC 59 3231974 3231992 TAGTGTTGTGCTCTGTAGC 59 NA Drosophila melanogaster 50 CG32276 FBgn0047135 FBtr0073107 1 1 2 60 3L 3198771 3198789 AATATGTGACAATGCGTGG 58 3198409 3198427 GGATATTGACCCTCTTTCG 57 NA DesignNoJunction Drosophila melanogaster 50 rasp FBgn0024194 FBtr0073029 1 1 1 60 3L 3163181 3163199 GACGCATCCACTTCTACTC 59 3163223 3163241 AGGAATTCGTACAGACCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 prominin-like FBgn0026189 FBtr0073120,FBtr0073119,FBtr0073118 2 3 3 89 3L 3118970 3119051 CCTGCTTCTAGCCATACTG 59 3118899 3118917 TAGGTTACCATACCCAGCA 59 NA Drosophila melanogaster 50 CG16753 FBgn0035393 FBtr0072990 3 1 1 107 3L 3055297 3055315 AAGAAGGAGAAATCCGAGG 58 3055386 3055404 GACAACTTTGGTCTTCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33231 FBgn0053231 FBtr0072896 2 1 1 64 3L 2465278 2465296 TAGAGCAGCTAGTGATGAG 57 2465323 2465342 AAACATTCCTCAGGATCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13801 FBgn0035332 FBtr0072888 3 1 1 60 3L 2362078 2362096 ATATCAATTCTGTCCGCCT 58 2362118 2362138 CCTTGATGATATCCTTCTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myo61F FBgn0010246 FBtr0072675,FBtr0072673,FBtr0072672,FBtr0072674 1 4 4 83 3L 1326066 1326084 TCCTCGAGAACTACCAGAG 59 1326127 1326210 CAATGTAGGTATAGATCAGGTCC 59 NA Drosophila melanogaster 50 bab1 FBgn0004870 FBtr0072642 1 1 2 126 3L 1040332 1040350 AAATGATGGAGAACTCGCA 59 1040151 1040169 TGATGCATCAGATTCTGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG13895 FBgn0035158 FBtr0072605 2 1 1 179 3L 707611 707898 TACTCTGACAATGATGACACC 59 707452 707470 CCGATTGGAGACTATGCTC 59 NA Drosophila melanogaster 50 MED14 FBgn0035145 FBtr0072555,FBtr0072554 1 2 2 85 3L 594775 594793 CTACATACGATCGGTGTCC 59 594842 594930 TTCCTTGGAGGTTGAAGTC 59 NA Drosophila melanogaster 50 rno FBgn0035106 FBtr0072531,FBtr0072532 2 2 2 137 3L 197455 197473 ATGAGAATGTCATCTGCGA 58 197278 197354 ATAGCCATTGTCCTGATGG 59 NA Drosophila melanogaster 50 CG34038 FBgn0054038 FBtr0100093 2 1 1 96 2R 21056206 21056224 AGTTGAAACTGTTAGGCGA 59 21056283 21056539 TGGTTGTAATGACATTCCGT 59 NA Drosophila melanogaster 50 CG16936 FBgn0027590 FBtr0072436 2 1 1 278 2R 20654930 20655005 GAACTACGGCCAATTAACC 58 20654670 20654688 ATAATACAGGATGGGCTCG 58 NA DesignRelaxed Drosophila melanogaster 50 itp FBgn0035023 FBtr0072306 3 1 2 84 2R 20443083 20443815 CCGATTATGCAAGAAAGACTG 59 20443861 20443879 GGATATTTCCTCTTCGGGT 58 NA Drosophila melanogaster 50 CG3419 FBgn0035002 FBtr0072292 2 1 2 89 2R 20301906 20301924 GCAGCCAAGACTTAAATCC 58 20302060 20302078 TTGTTGGGAATTAAGTGCC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Rap2l FBgn0025806 FBtr0072177 3 1 2 125 2R 19952545 19952563 TCGAGTGAAAGGAAGTCAG 58 19952723 19952742 ATAAATGGACAGTCCCACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4019 FBgn0034885 FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103 1 4 4 213 2R 19495764 19495782 TCGAGTTCGTAATCACCTC 58 19495489 19495507 TAGATCCAGTTGCTCTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 apt FBgn0015903 FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067 2 5 5 107 2R 19484512 19484593 TAAAGACGGAAATGACACAG 57 19484660 19484681 GATCGAGTAGGTATTTCTTCTC 57 NA Drosophila melanogaster 50 apt FBgn0015903 FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067 1 4 5 115 2R 19468991 19484433 GGTCAACAAACAGTATTCGG 59 19484508 19484591 GTGTCATTTCCGTCTTTATGTC 59 NA Drosophila melanogaster 50 CG9812 FBgn0034860 FBtr0072025 2 1 2 142 2R 19300650 19302031 ATCAACCAAGATGCAAGGA 59 19300307 19300544 CCAATGGGAATATCGAGGG 59 NA InUTR Drosophila melanogaster 50 CG9895 FBgn0034810 FBtr0071986 3 1 1 112 2R 18901384 18901402 TAAATGGATCACGACTGCA 58 18901290 18901308 GACTCCAAGAGTCGAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30264 FBgn0050264 FBtr0071889 3 1 1 80 2R 18716120 18716194 CACAGATAACTTGGAACGC 58 18716235 18716256 TGAATTAGTATCCGACTCACAC 59 NA Drosophila melanogaster 50 RpS24 FBgn0034751 FBtr0071935 2 1 1 248 2R 18528524 18528542 CCAGGAAACAGATGGTCTG 59 18528294 18528312 GCTTCTTCTGTTCGAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gp150 FBgn0013272 FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815 3 4 4 83 2R 18213223 18213296 GAAGTCCAAGAGCAAATCC 58 18213341 18213361 TCGTCGTAGTCATATTGAGAG 58 NA Drosophila melanogaster 50 CG17922 FBgn0034656 FBtr0071675 2 1 1 98 2R 17581991 17582010 AAACATCGGGTTATGTACCT 58 17581856 17581930 CAGATCCAGCTTAAACTGC 58 NA Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708 1 9 9 89 2R 17398741 17398920 CCAGAGGATTACGTCTATCC 58 17398972 17398990 ACCAATCACCGACTTTAGG 59 NA Drosophila melanogaster 50 Sara FBgn0026369 FBtr0071641,FBtr0071642 2 2 2 116 2R 17373768 17373847 TTATTAAGTGCGAGGACTGG 59 17373926 17373944 AAAGATCGAGAAGTGGCAG 59 NA Drosophila melanogaster 50 dom FBgn0020306 FBtr0071602,FBtr0071603 3 2 3 90 2R 17222088 17224944 GAGTAATCAGGTCTGGATATCG 59 17225053 17225074 GATATCGTTATCGTTGTCTTGC 59 NA Drosophila melanogaster 50 Hil FBgn0050147 FBtr0086256,FBtr0086255 1 2 2 95 2R 16502071 16502089 CTTCAAATGCGTACACTGC 59 16500960 16502013 TGTGAACTGCAATAGACCTC 59 NA Drosophila melanogaster 50 Fak56D FBgn0020440 FBtr0086542,FBtr0086543,FBtr0114605,FBtr0086544 3 4 5 84 2R 15322745 15322828 TGGTATTAATACCGCTGAGAG 59 15322681 15322700 CCAAATCGTGAACTCTAGGT 59 NA Drosophila melanogaster 50 ena FBgn0000578 FBtr0086583,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582 3 5 6 115 2R 15048910 15048988 CCATTCTCAAGGTCAATGG 58 15049064 15049085 GTTCTTGACTTTCTGAATCTCC 58 NA Drosophila melanogaster 50 CG10927 FBgn0034360 FBtr0086705 3 1 1 60 2R 14501328 14501347 ACCGAAGATTTCAAGAAGGA 58 14501367 14501388 GGTAATCGTAGTAGGCTTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12263 FBgn0034346 FBtr0086691 3 1 1 132 2R 14314961 14314981 GAAAGTAAGGATTGGCAAGTG 59 14315075 14315150 CCACCACGGATCTTATCAC 59 NA Drosophila melanogaster 50 CG5770 FBgn0034291 FBtr0086812 2 1 1 110 2R 13932207 13932225 AGAAGACCTATCAGTCCGA 58 13932052 13932133 CATTATCAGCAGCATTCGC 59 NA Drosophila melanogaster 50 PpY-55A FBgn0003140 FBtr0086817 3 1 1 60 2R 13843909 13843927 GAGTGCACATTAAAGGAGG 58 13843867 13843885 TGATCACTTCACGAGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4847 FBgn0034229 FBtr0086937,FBtr0086934,FBtr0086933 1 3 5 191 2R 13400212 13400290 GACTTCTTGAGCCAATCTG 58 13400443 13400463 GGTCAATTGACTAAGGAACTC 58 NA Drosophila melanogaster 50 CG6984 FBgn0034191 FBtr0086979 3 1 1 60 2R 12980162 12980180 AGAAGCCTACATATCGGGA 59 12980202 12980222 CTCCTTATCTAGTTCCTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9646 FBgn0034184 FBtr0086974 3 1 1 92 2R 12937673 12937748 AATTTGAGACTGAGGTGGA 58 12937804 12937822 TGAGATAAACCGTCTCCTC 58 NA Drosophila melanogaster 50 CG8963 FBgn0034181 FBtr0087016,FBtr0087017 3 2 2 119 2R 12905299 12905580 TTGCCTTAACCAGAATCCG 59 12905198 12905216 TTCTCGAAGATGTCCTCCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG15609 FBgn0034180 FBtr0114627,FBtr0114625 2 2 6 104 2R 12896440 12897016 CAATCATTGTGAGACCGAG 58 12896354 12896373 ATATTTAGCTGCATCTGTCG 57 NA Drosophila melanogaster 50 Psi FBgn0014870 FBtr0087073,FBtr0087072 3 2 3 178 2R 12752526 12752604 AGAATAAGCAGAACGGATCTG 59 12752368 12752386 ATACTGCGAATACTGTGCA 59 NA Drosophila melanogaster 50 CG8435 FBgn0034084 FBtr0087249 1 1 1 165 2R 12057716 12057734 GGACTACAACACTCTGCTG 59 12057509 12057530 CTTGATCTCCTCAATGATTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 Mlf FBgn0034051 FBtr0087294,FBtr0087292,FBtr0087295,FBtr0087293 1 4 4 133 2R 11826642 11826660 CTTTGACCAGGGATTCCAG 59 11826469 11826545 AATTGCCACCAATATCAGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG8297 FBgn0034050 FBtr0087290 2 1 1 60 2R 11822560 11822578 AATTTGACGGTGTATTCCC 57 11822601 11822620 AGGTTTCGAAGCTATAATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30466 FBgn0050466 FBtr0087339 1 1 1 111 2R 11460161 11460182 GGATTTAAGGAGTTCACATTCG 59 11460253 11460327 GGATGGGATCCTCATTAGAC 59 NA Drosophila melanogaster 50 CG12963 FBgn0034031 FBtr0113083 1 1 4 127 2R 11443335 11443353 GCTTCTGGTCATCATTCTC 57 11443509 11449328 CATTACGATCATTTCGTGTG 57 NA Nonspecific Drosophila melanogaster 50 Hex-C FBgn0001187 FBtr0087399 1 1 1 60 2R 11106836 11106855 CTTTAAACAGAGCAGTCGAC 58 11106795 11106813 AACCTCTTCGTTTCTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10249 FBgn0027596 FBtr0087429,FBtr0112929,FBtr0087431,FBtr0087430 1 4 4 88 2R 10790219 10790298 GACAGTAATGGCAACACAG 58 10790149 10790167 TCGCAAACCTTAGAATCCA 58 NA Drosophila melanogaster 50 Cyp6a20 FBgn0033980 FBtr0087454 2 1 1 60 2R 10769905 10769923 TAAGACCGTACTGATTCGC 59 10769946 10769965 TTCGTTATGAAATACTCCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-phe FBgn0020766 FBtr0087594 3 1 1 63 2R 9856202 9856223 GTCTATGATCAAATGAATCCGG 58 9856247 9856265 CGGGAATTAGCAGATTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tum FBgn0086356 FBtr0087641 3 1 1 140 2R 9744167 9744186 TGATGAAGGCACTTCTTGAG 59 9743991 9744065 TGAAGGGAGTTGCATATAGC 59 NA Drosophila melanogaster 50 CG34315 FBgn0085344 FBtr0112513 1 1 1 80 2R 9093547 9093568 CTCTTCAGCTTCCTTATATGGA 59 9093416 9093506 CAAAGTAAGATCCAGCGGA 59 NA Nonspecific Drosophila melanogaster 50 Nmda1 FBgn0013305 FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876 3 6 6 93 2R 8765642 8765662 GACGAACTTCATATTCTTGGG 58 8765511 8765587 CATGAGAACCTCTTTCGGA 58 NA Drosophila melanogaster 50 CG30488 FBgn0050488 FBtr0087818 3 1 1 123 2R 8734737 8734944 AGTAAGAGAAGGAACCTGTG 58 8734633 8734654 GCAGAGCAGGATAATATTTGAC 59 NA Drosophila melanogaster 50 CG30044 FBgn0050044 FBtr0113358 3 1 2 190 2R 8383681 8383699 CAATGTGAATCTGCTGCTC 59 8385931 8387475 CAGAAGTCTCGTAGCACTG 59 NA Nonspecific Drosophila melanogaster 50 RpIII128 FBgn0004463 FBtr0087977 3 1 1 60 2R 7928586 7928607 GAGTATTTAGATGTGAACGAGG 58 7928627 7928646 CTATTTGATCCTCGTTCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ef1alpha48D FBgn0000556 FBtr0088036,FBtr0088035 2 2 2 63 2R 7781103 7781121 TAACATTGTCGTGATCGGA 58 7781148 7781166 GTAGATCAAGTGTCCGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13185 FBgn0033661 FBtr0113071 3 1 2 86 2R 7758832 7758925 ATAAGCTACTATGCCTCGC 59 7758764 7758782 CCTTACTACCGATCTCCAC 58 NA Drosophila melanogaster 50 Cpr47Ee FBgn0033602 FBtr0088114 2 1 1 60 2R 7154176 7154194 CCTAATCACCCAACAACTG 58 7154215 7154236 ATTATAGCCATATGGATCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr47Ea FBgn0033597 FBtr0088190 2 1 1 99 2R 7139895 7139913 TGGCTATTTGAAGAACCCG 59 7139728 7139746 GTAGGTGATGGTGTAGACC 58 NA DesignNoJunction Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 1 12 12 88 2R 6499952 6500255 GCATATGGACATGTATAACTCG 58 6500304 6500322 TATAGTGCGGTTCCTTCTG 58 NA Drosophila melanogaster 50 CG1599 FBgn0033452 FBtr0089394 1 1 1 105 2R 5728846 5728922 GAGCAATAATTCCGTTGCA 58 5728759 5728777 GAAGGTTATCACCAGACCC 59 NA Drosophila melanogaster 50 CG1623 FBgn0033448 FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487 1 4 4 69 2R 5716115 5716133 GAACTACGAACCCAAGACC 59 5716064 5716082 ATCCGGATACTTGTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33800 FBgn0053800 FBtr0091804 2 1 1 60 2R 5636492 5636511 TAATTTCCGTGTAATCGGAC 57 5636533 5636552 ATCGACGTGAAAGTTAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(var)2-10 FBgn0003612 FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578 1 9 9 80 2R 5005945 5006020 TCATAGATGGCTACTTCCAG 58 5006060 5006081 CATCCTGATGAAGTTGAATCTC 58 NA Drosophila melanogaster 50 CG30350 FBgn0050350 FBtr0088636 2 1 1 60 2R 4714781 4714801 CTCGAAGTTTATGGTCAAACG 59 4714823 4714841 CAGCATCAAATCGGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2915 FBgn0033241 FBtr0088879,FBtr0088878 3 2 2 61 2R 3845933 3845951 TATTCCGATTGCCTACACC 59 3845890 3845908 GAATGAACAAGTCCTGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Prosalpha6 FBgn0026781 FBtr0088896,FBtr0088895 2 2 2 250 2R 3715847 3715927 CTCTACCAAGTGGAGTACG 58 3715327 3715345 TACTTGTAGCGGAAGTTGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG1882 FBgn0033226 FBtr0088835,FBtr0088837,FBtr0088834,FBtr0088836 1 4 4 62 2R 3701151 3701169 ATTTGTGAAATCGGTGGAG 58 3701195 3701213 CCCAACAGAATCATGTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12824 FBgn0033222 FBtr0088830,FBtr0113050 3 2 2 105 2R 3678248 3678269 CTACTTAATGGGTTACTCATCC 57 3678388 3678406 ATAGAATGCCATTCCGAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Gr43a FBgn0041243 FBtr0089014,FBtr0110820 2 2 2 153 2R 3279520 3279538 ATGTGCACTGGTACATTCC 59 3279330 3279403 CTGGTTGCATTGTTCTCTG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111050 2 1 60 178 2R 3249250 3249268 GGAGAAACCCGATTAAGTG 57 3236472 3242602 TTGTACCATCTAAACGATGG 57 NA Drosophila melanogaster 50 CG1850 FBgn0033154 FBtr0089022 1 1 1 60 2R 3147967 3147985 CTCAACCCATTGAGGAGAC 59 3147925 3147943 AACTGCTTCAGATGTTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha16 FBgn0004145 FBtr0086150,FBtr0086153,FBtr0086151 1 3 4 80 2R 2519556 2519574 TTCTTCGGAGTTATGGGAG 58 2515389 2515407 GGTACCAGACTTAGCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Pld FBgn0033075 FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997 1 6 6 80 2R 2141751 2142360 GACATTCAGGGTTACTTGGT 59 2142403 2142421 CTCCTTACTAGTTCCAGGC 58 NA Drosophila melanogaster 50 l(2)k14710 FBgn0021847 FBtr0086000 1 1 1 81 2R 2100656 2100731 ACACGGAAATGATTAGCTG 57 2100593 2100611 CTTCCACTAACGAGATCGT 58 NA Drosophila melanogaster 50 mle FBgn0002774 FBtr0086031,FBtr0100576,FBtr0086030 1 3 3 82 2R 1864960 1865499 CCTGCATGTTATTCTTATGTCG 59 1864899 1864918 GTACTTCCAATACGGGACAG 59 NA Drosophila melanogaster 50 ap FBgn0000099 FBtr0086059,FBtr0086058 2 2 2 100 2R 1595875 1596126 CGCTAACATAGATCTCAACAC 58 1595795 1595813 GATGCTTAAACGAGGTTCG 58 NA Drosophila melanogaster 50 CG6448 FBgn0032976 FBtr0085939,FBtr0113045,FBtr0085938 2 3 5 213 2L 22156803 22158518 GTCCAAATTCAAGGTGCTG 59 22158694 22158713 TTGCCGATACGATTTATTCC 58 NA DesignRelaxed Drosophila melanogaster 50 nompB FBgn0016919 FBtr0085924,FBtr0085925 2 2 2 82 2L 21578666 21578756 GGCAAAGTTTACTATCAGACAG 59 21578605 21578623 TCTGAGTATGGACTACGCT 59 NA Drosophila melanogaster 50 Gr39b FBgn0041245 FBtr0081522 2 1 1 68 2L 21368048 21368066 ATGCTGAGGGCTTTATGAG 59 21367940 21367958 AATAGGTAACTTTCGCAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG9264 FBgn0032911 FBtr0081463 1 1 2 80 2L 21080465 21080483 ATCCTATTCAGTGGCTGTG 59 21080526 21080608 AGGTATCAGCAGAATGAGTC 58 NA Drosophila melanogaster 50 CG9270 FBgn0032908 FBtr0081436,FBtr0081435 3 2 2 92 2L 20930076 20930152 CTTAGAAGAGGTGCACCTC 59 20930002 20930021 CCTACACTGTAGTTGGATCC 59 NA Drosophila melanogaster 50 CG2608 FBgn0032870 FBtr0081384 1 1 1 63 2L 20646473 20646491 GAGATAGCCAAGGAGTACG 58 20646518 20646536 CTTTGTCACTTTGCTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 phr6-4 FBgn0016054 FBtr0081404 2 1 2 147 2L 20645748 20645766 AACAGCTGTTTACACTCGA 59 20645347 20645420 GATTTCAAACGGTACCTGC 59 NA InUTR Drosophila melanogaster 50 CG40174 FBgn0058174 FBtr0100564 3 1 1 60 2L 20257971 20257989 CCATCGTTTGTCTTGTTCG 59 20257929 20257947 GTAGAGTGGGTTGGATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 swm FBgn0002044 FBtr0081244,FBtr0081245 1 2 2 183 2L 19496695 19496714 TGCGAATAACAAGTCTACCC 59 19496860 19496969 GCCGAAGTTCTTAAAGTGC 59 NA Drosophila melanogaster 50 CG17567 FBgn0040994 FBtr0081231,FBtr0081232,FBtr0081230,FBtr0081229 1 4 4 157 2L 19183415 19183433 TTAGGATACCCTGAACGCT 59 19183223 19183241 AATGAGCACTGGATGTAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7094 FBgn0032650 FBtr0080990 3 1 1 60 2L 17555074 17555096 GAGATACAAGGACATAGAGTCAG 59 17555036 17555054 AGTTAGATTCCGATCCGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dl FBgn0000462 FBtr0081005,FBtr0081006,FBtr0081007 1 3 3 80 2L 17442329 17442416 GATCCGTTTAAGACTGGCT 59 17442267 17442285 TACTTGAAAGCACAATCGC 58 NA Drosophila melanogaster 50 beat-IIIc FBgn0032629 FBtr0080971,FBtr0080972 2 2 2 90 2L 17191092 17193535 GATTGTTGCGTATCTTCCG 58 17191020 17191040 GCAATTAACCCGAACATAGTC 59 NA Drosophila melanogaster 50 beat-IIIb FBgn0053179 FBtr0080951 3 1 1 160 2L 16992118 16992667 GCTCGAAGACAAACAACTG 59 16992791 16992809 CTAATATGCGTGACCAGGG 59 NA Nonspecific Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080905,FBtr0080897,FBtr0080907 3 3 13 82 2L 16777372 16777392 CTTGAAGGTATCCGTATTTGC 59 16777436 16778404 TTCAGGATTTGATAGCGCA 59 NA Drosophila melanogaster 50 trpgamma FBgn0032593 FBtr0080946,FBtr0080945,FBtr0114470 2 3 3 80 2L 16666840 16666932 CGTATCAACTTATTTCGGAACG 59 16666781 16666801 CCTCCTCAAAGTAGCTTATCC 59 NA Drosophila melanogaster 50 wor FBgn0001983 FBtr0080740 1 1 1 60 2L 15424610 15424628 AGAGGATCAGGAGAATCAG 57 15424568 15424586 GTACAGATCATTGCTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15277 FBgn0032555 FBtr0080680 2 1 1 253 2L 14908819 14908837 TACTGAACGCTTATGCCAG 59 14908584 14908602 GTTATCGTCCAGATCCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32972 FBgn0028905 FBtr0080600 3 1 2 88 2L 14164081 14164100 CGTTTCTACCAGGTTAAGGA 59 14163420 14164033 GTGCTATCGTTCTTAATCTTGC 59 NA Drosophila melanogaster 50 Acyp FBgn0025115 FBtr0080555 1 1 1 80 2L 13912481 13912499 TTCATATCAAGCCCGATCC 59 13912543 13912561 AATTGCTATCATGGTGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9014 FBgn0028847 FBtr0080579 3 1 1 165 2L 13723000 13723076 GAATGAAGGTACCCAAGGA 58 13722853 13722871 TAGTACTGGAACAGCTCCA 59 NA Drosophila melanogaster 50 CG9263 FBgn0032530 FBtr0080515 3 1 1 61 2L 13542197 13542216 AATTGGTACGGATGGATGTC 59 13541967 13541985 ATCTCAACATCGTCTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6108 FBgn0032498 FBtr0080459 2 1 1 60 2L 13277633 13277651 CAGTTACAGTCAGAGTTCC 57 13277672 13277693 GATTATATCCGGTAGAACACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090013,FBtr0090027 2 3 17 91 2L 12731058 12737970 ATCTTTATGGTTCTGGCTACC 59 12738023 12738041 AAGTAGTACAGGAAGGCGA 59 NA Drosophila melanogaster 50 CG16997 FBgn0032413 FBtr0080335 2 1 1 60 2L 12111331 12111349 ATTAATTCCAACTGGCTGG 57 12111370 12111391 CAAGTACTTGATTCCTATTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-thr FBgn0027081 FBtr0080333,FBtr0080332,FBtr0080331 3 3 3 73 2L 12105094 12105112 CTACGACATGCATCTGGAG 59 12105203 12105221 TTTGCTTAACCAGACCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 crol FBgn0020309 FBtr0080262 1 1 4 138 2L 11797737 11798678 CTTCATCTGCAAAGTTCCC 58 11797617 11797635 GATGAGCGTAGAGGTAACC 59 NA Drosophila melanogaster 50 CG31705 FBgn0028490 FBtr0080244,FBtr0080243,FBtr0080242 2 3 3 77 2L 11524601 11524620 AGCTGTTTACTATCCACAGG 59 11524475 11524493 AATGCTCCAGCGATAAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14920 FBgn0032337 FBtr0114455 1 1 1 60 2L 11084169 11084187 ATCATCAAGCTAGGGAGGA 59 11084066 11084084 TAATCCAACAATGTTCCCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG18561 FBgn0032301 FBtr0080190 1 1 1 64 2L 10792422 10792440 GACATGGCTCCATAAACAC 58 10792376 10792394 CTTAAGCAGCCTCTTTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31869 FBgn0051869 FBtr0080189 3 1 1 199 2L 10775281 10775378 CGATTATAAATGCGATTGCG 58 10774739 10774757 TTGGACAATTGTCGTACTG 57 NA DesignRelaxed Drosophila melanogaster 50 CG17118 FBgn0032291 FBtr0080111 2 1 1 99 2L 10730584 10730605 GTGCTCCTTATAAAGAACATGC 59 10730731 10730749 TCTGGAAATTGGACACTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18302 FBgn0032266 FBtr0080095 2 1 1 83 2L 10535693 10535777 GACCATTAGTGTTTATTGCCAG 59 10535820 10535839 TCTTATGTATCAGGCTTCGC 59 NA Drosophila melanogaster 50 CG33301 FBgn0053301 FBtr0079935 2 1 1 60 2L 10049949 10049967 AAACTAACTGCAGATGCCA 59 10049991 10050009 AATCCTCCAGAATCATGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nAcRalpha-30D FBgn0032151 FBtr0079912 2 1 6 113 2L 9802435 9806460 TGCTGTTCCTCTTATAGGAG 58 9798296 9802359 AAGTAGGTGCCTAACAAGG 58 NA Drosophila melanogaster 50 CG3838 FBgn0032130 FBtr0079835,FBtr0079834 2 2 2 69 2L 9571883 9571962 CAAGAGAAAGCGTGATCCA 59 9571995 9572013 TTTATGTAGCGGGATAGGC 58 NA DesignRelaxed Drosophila melanogaster 50 FucTB FBgn0032117 FBtr0079811 2 1 1 81 2L 9430069 9430088 ACTGATGAAACATCTTCCGA 59 9429574 9430025 GTAATCCTTCTGCAAGCTC 58 NA Drosophila melanogaster 50 RpS13 FBgn0010265 FBtr0100541,FBtr0079724 1 2 2 183 2L 8364231 8364249 AGATGATGTCAAGGAGCAG 59 8364004 8364022 CATGTGGTACAGATCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Pvr FBgn0032006 FBtr0079625,FBtr0079627 1 2 6 109 2L 8228249 8228503 TAATGGAGAAAGCACGTGG 59 8228158 8228176 TGACTCGAAAGGTAAAGCC 59 NA Drosophila melanogaster 50 CG8552 FBgn0031990 FBtr0079641 3 1 1 82 2L 8136758 8136777 GTGGACACAAAGTTCATCTG 59 8136622 8136715 GTGGAATCGTCAAGATTTAGG 58 NA Drosophila melanogaster 50 CG14538 FBgn0031943 FBtr0079484 3 1 1 61 2L 7756733 7756751 TCCCATCATTGTCATCCAG 59 7756776 7756794 CAACGTTATCACTGCTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31904 FBgn0051904 FBtr0079502,FBtr0079501 2 2 2 107 2L 7735484 7735566 ATTTAAAGGCATTGGCTACG 58 7735396 7735414 GGGTGTATTGAATTCACGG 58 NA Nonspecific Drosophila melanogaster 50 CG33296 FBgn0053296 FBtr0079509 1 1 1 102 2L 7714974 7714992 TCTTGTCTAGTGCAAGTGC 59 7714821 7714908 AGTTGAGTTGCAGTCAGAG 59 NA Drosophila melanogaster 50 GRHR FBgn0025595 FBtr0079308,FBtr0079310,FBtr0079309 3 3 3 99 2L 6713835 6714562 GTGTACAGCATACTGTTTGTG 59 6713756 6713775 TGATATCAATACGCAAGGGA 58 NA Drosophila melanogaster 50 Spn27A FBgn0028990 FBtr0079321 2 1 1 60 2L 6672928 6672947 TCATGGCATCTACTGAAGAC 59 6672887 6672906 AGATGATCACATTCTTGTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11030 FBgn0031736 FBtr0079135 3 1 1 221 2L 5759153 5759171 AGAAGATGACAGCGATGAG 59 5759356 5759440 AGCATGGAAGACGTAATGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14017 FBgn0031721 FBtr0079105,FBtr0079104 1 2 2 60 2L 5554043 5554061 AGACATCGCCTACAATCAC 59 5554085 5554103 TAGATACCGTCTGTCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vri FBgn0016076 FBtr0079070,FBtr0079071 3 2 2 123 2L 5307901 5308027 AGGCTTCTAACTTGCATCC 59 5308113 5308132 ATCATTCCATCTCCATAGCC 59 NA Drosophila melanogaster 50 CG14035 FBgn0031685 FBtr0079020 1 1 1 60 2L 5103477 5103496 TGATTTACGATGACGAAGAG 57 5103516 5103537 GATTGATTCGCTATAATCTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31919 FBgn0031674 FBtr0079007,FBtr0079006,FBtr0100270,FBtr0079008 1 4 4 116 2L 5047102 5047120 AGATGGATCCACATAGTGC 58 5047198 5047284 CGTTATAGATAGCTGCATTCC 58 NA Nonspecific Drosophila melanogaster 50 ine FBgn0011603 FBtr0077448,FBtr0077446,FBtr0077449 3 3 4 142 2L 4473965 4474339 AGTCTCAGGTTATCTTCCAG 58 4473842 4473860 GGAAATGATAGGAACTGCC 57 NA Drosophila melanogaster 50 Gs1l FBgn0019982 FBtr0110812 1 1 2 148 2L 4456500 4456518 AGGAAACGAACTTGTTGAC 58 4456060 4456388 TATATCCTCTCCGTGTCCA 58 NA InUTR Drosophila melanogaster 50 slp2 FBgn0004567 FBtr0077500 2 1 1 60 2L 3838116 3838137 CAATTTCTTACCTATCCTCCGA 59 3838157 3838176 TATAACGCTGATACATGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31952 FBgn0051952 FBtr0077591 2 1 1 66 2L 3417320 3417338 AGCAGCTAAGGACAAAGTC 59 3417368 3417386 TGTGACTTTCGACTTTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3542 FBgn0031492 FBtr0077648,FBtr0077649 3 2 2 80 2L 3024052 3024070 CACGTTAGCGGCTATAGAG 59 3024169 3024188 TTATCCTTAAACACCACAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG3542 FBgn0031492 FBtr0077648,FBtr0077649 1 2 2 77 2L 3024055 3024073 GTTAGCGGCTATAGAGGTG 59 3024169 3024188 TTATCCTTAAACACCACAGC 57 NA DesignNoJunction Drosophila melanogaster 50 Ts FBgn0024920 FBtr0077679 2 1 1 60 2L 2968689 2968707 CATTAAACGTCAGGTGCAG 59 2968647 2968667 GTCGACTATCTGAAAGTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4272 FBgn0028485 FBtr0077763,FBtr0077762 1 2 2 60 2L 2368168 2368189 CTCGTACGGAGAACTATATCAG 59 2368207 2368330 CGTATAGGAAGTGATCTGAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31668 FBgn0051668 FBtr0113412 1 1 1 80 2L 2205761 2205782 AATGACTATATGATGGGATCGC 59 2205631 2205720 CACCGCAGATATACAGCTC 59 NA Drosophila melanogaster 50 CG10874 FBgn0031395 FBtr0077848 3 1 2 121 2L 2191944 2191962 GGTGACCTATGTGAATGAG 57 2191070 2191859 CATCACGATCTTTCAGGAG 57 NA Drosophila melanogaster 50 CG31665 FBgn0051665 FBtr0089787,FBtr0089786 3 2 2 123 2L 1851262 1851698 ACCTGCTAATTGTGGTGTC 59 1851785 1851803 GAGTTGGAGTAGCACACTC 59 NA Nonspecific Drosophila melanogaster 50 Gr22b FBgn0045500 FBtr0100188 2 1 1 69 2L 1793231 1793250 GAAATTCGTCCTTATTTGGC 57 1793181 1793199 ATATACCGAGTAGCCAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 chinmo FBgn0086758 FBtr0077879,FBtr0077877,FBtr0077880,FBtr0077878 3 4 4 104 2L 1690665 1690684 AAATGGAACAGTTTCTCGTC 58 1690751 1694237 TTTGAATACTACGCCATCG 57 NA Drosophila melanogaster 50 CG31924 FBgn0051924 FBtr0077945,FBtr0077946 1 2 2 60 2L 1354545 1354563 TCAAAGCGTTCAACATTCC 58 1354503 1354521 ATCCTAAACGAATCCCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11835 FBgn0031264 FBtr0078076 1 1 1 60 2L 562207 562225 AACCAAAGAGTCCAAGGTG 59 562165 562184 AGTGTTCTGATCCAATTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ush FBgn0003963 FBtr0078063 3 1 1 82 2L 539382 539400 CAAGATGTGACTTCCAACC 58 539446 539529 TTAATGTGGAAACTGGGTG 57 NA Drosophila melanogaster 50 spen FBgn0016977 FBtr0078122 3 1 3 82 2L 199974 200131 CATAACACCGAATGATTCTACG 59 200173 200192 CACCTCGCATTAAATGATGC 59 NA Drosophila melanogaster 50 CG14618 FBgn0031189 FBtr0077351 2 1 1 128 X 21876258 21876276 GACCACAATCACTTCAAGG 58 21876368 21876477 AAACACATGGTAGGTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7406 FBgn0030980 FBtr0074664 1 1 1 60 X 18972152 18972171 TCTCACGGACATGATTATGG 59 18972191 18972212 CCTTGATGATCTTAACATCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18259 FBgn0030956 FBtr0074661 3 1 1 129 X 18676847 18676865 TGGGTAACCACATGTTGTC 59 18676679 18676756 GATATTTCCTCATCCTCGAGG 59 NA Nonspecific Drosophila melanogaster 50 CCKLR-17D1 FBgn0030950 FBtr0113001 1 1 3 81 X 18603481 18607397 CTACTATGATTACGGCCAC 57 18603418 18603436 GTATAGATGCCTCCTTCCT 57 NA Drosophila melanogaster 50 CG6788 FBgn0030880 FBtr0074495 1 1 1 68 X 17782499 17782517 AGATCAAGGACCAAAGTGC 59 17782549 17782567 GACACTCACTTCGAAGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7835 FBgn0030879 FBtr0074543 2 1 1 70 X 17768493 17768511 CAATGTGCTGATGGTTCAG 59 17768441 17768460 TATAATAGAGTGCCCGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13003 FBgn0030798 FBtr0074349 1 1 1 89 X 16740997 16741015 TTATTTCGCCAACAGGAGG 59 16740611 16740629 CACTGTAGTTCACCATGGG 59 NA DesignNoJunction Drosophila melanogaster 50 para FBgn0003036 FBtr0111022,FBtr0074298,FBtr0111023 3 3 3 81 X 16386529 16386547 TGTGATGGTCCTGAATGAC 59 16383897 16386484 ATAGTAAACGGAGACACCG 58 NA Drosophila melanogaster 50 CG9919 FBgn0030742 FBtr0074236 2 1 1 81 X 16223400 16223562 CAGTCGTTTGTCAAGTCCT 59 16223337 16223355 GGTAGGAGTCCATCAATGG 59 NA Drosophila melanogaster 50 CG11584 FBgn0030541 FBtr0073893 3 1 1 62 X 14076245 14076263 GTGGTTCAGAGCTACAGTG 59 14076288 14076307 TGGATAGGAATAGGTCTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tim9a FBgn0030480 FBtr0073775 1 1 1 122 X 13279589 13279607 CATACGCGACTTTACAACG 59 13279758 13279776 ATAACCTGGAACTCCTGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG32643 FBgn0052643 FBtr0073716 3 1 1 82 X 12878837 12878855 AGCACATACGTTACTACGG 59 12878899 12878919 AGTATTCTGTTGGTCAAGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab40 FBgn0030391 FBtr0073668,FBtr0073669 1 2 2 84 X 12355529 12355547 ACATCACCAACAAGTGGAG 59 12355219 12355237 AGAACCTTCGGAATTCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CkIIbeta FBgn0000259 FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559 3 5 6 164 X 11689031 11689146 TTTGTTCCAAGGCTATATGG 57 11689687 11689705 TTGTATTCGTGCGTATGTG 58 NA InUTR Drosophila melanogaster 50 CG11126 FBgn0030265 FBtr0073433 2 1 1 81 X 11001472 11001490 GAGTTGGAGTAACGTGACC 59 11001535 11001615 CTTGTAGGTGATGTTGCCA 59 NA Drosophila melanogaster 50 CG17841 FBgn0028480 FBtr0071444 1 1 1 80 X 10276473 10276492 TCATCAGCATCGCTATACTG 59 10276534 10276624 GTAGAAAGACCTTGAGAGCA 59 NA Drosophila melanogaster 50 CG32694 FBgn0052694 FBtr0071413 2 1 4 165 X 9893323 9895894 ACATCACCAAGCAAATCGA 59 9896022 9896041 CTCTTAGAGCTCTCATCGTC 59 NA Drosophila melanogaster 50 CG1530 FBgn0029983 FBtr0071097 3 1 1 85 X 7834381 7834400 TCTGGACATTTAAGTTCGAG 57 7834448 7834536 GAGGTGTTCCTTGTAATCC 57 NA Drosophila melanogaster 50 Mcm6 FBgn0025815 FBtr0070952 3 1 1 60 X 6569517 6569538 CACAAGATCTATGAGATGTCCA 59 6569556 6569577 AGAGGCTGCTAATTAGATTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HLH4C FBgn0011277 FBtr0070691 2 1 1 60 X 4540287 4540305 AAATAATCCGCATCTGGTC 57 4540245 4540263 CTTATCGATATCCAGCGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11444 FBgn0029715 FBtr0070698 2 1 1 120 X 4447990 4448008 GAGGAAAGTTCGTCAACCA 59 4447888 4447907 TTATCGTCGCTATCTGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11436 FBgn0029713 FBtr0070699 3 1 1 60 X 4444850 4444869 AACCTCCAAGATGTATAGCT 57 4444809 4444827 CTTCTTGAACTCCTTCACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL33 FBgn0040907 FBtr0070655 3 1 1 100 X 4216035 4216053 TACTGGAAAGTGTGGTCAG 58 4215890 4215971 TTCCTGTTGAATGTACGGA 58 NA DesignRelaxed Drosophila melanogaster 50 CG14797 FBgn0029587 FBtr0070271 3 1 1 231 X 1577935 1577953 GTCCGTGATGAGTATGGAG 59 1578201 1578219 GATCTGGAATAGGGTCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13369 FBgn0025640 FBtr0070115 1 1 1 80 X 518363 518443 CATTGGCAACATAGAGCAC 59 518487 518505 CCCAGAGTTATGATCACCG 59 NA Drosophila melanogaster 50 svr FBgn0004648 FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070086,FBtr0070082,FBtr0070085 3 7 7 108 X 396240 396324 TATGACAACTCCTTGGCTC 58 396394 396414 TCATAATCGGATGGTTGTCAG 59 NA Drosophila melanogaster 50 CG18166 FBgn0029526 FBtr0070095 2 1 2 62 X 375292 375313 GCTGTTAGAAGAGAACAATTCG 59 375188 375269 ATCGCGATAGTTCAACGAG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG41229 FBgn0085561 FBtr0114004 3 1 1 158 U 2151597 2151615 TTGGCGTTAAGTTATTGCG 59 2151737 2151755 CATACATACGTGGTCAACG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG40275 FBgn0058275 FBtr0113857 1 1 2 75 U 1839127 1839145 GAATATAGCTGGTGTTGCC 58 1845814 1845832 ATTAGGAGCTTTAACGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG41053 FBgn0069960 FBtr0113978 1 1 1 298 U 642877 642898 CTCCAGAATTTATACCGTTACC 58 641891 641909 TTTCTTCTGCTTCCTCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CaMKII FBgn0004624 FBtr0089217,FBtr0089218,FBtr0100148,FBtr0089219,FBtr0100146,FBtr0100147 2 6 6 80 4 1068498 1068517 CAGGATATCTGTCTCCTGAG 58 1068344 1068456 AAAGAATAACTCCACATGCC 58 NA Drosophila melanogaster 50 RhoGAP100F FBgn0039883 FBtr0085869 1 1 1 91 3R 27661191 27661274 CTGAGAAATACGGAAAGCA 57 27661329 27661347 GAAATTGGTCGGGTAAGAC 58 NA Drosophila melanogaster 50 CG18673 FBgn0040629 FBtr0113330 2 1 1 125 3R 27089287 27089359 CGTACAATGGATCTCTGACC 59 27089447 27089465 TTTGTCGTGAGTCTCTGAG 58 NA Drosophila melanogaster 50 CG33483 FBgn0053483 FBtr0089295 3 1 1 93 3R 26726722 26726740 ACACTCGAAGTACAATCCG 59 26726587 26726666 TAGATCATGATCGAATGGGC 59 NA Drosophila melanogaster 50 spn-A FBgn0003479 FBtr0085589 2 1 2 70 3R 25881634 25881652 CTAACGAATGTTCAGGCAC 58 25881519 25881602 CCTATTAACTTAGTCACGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS8 FBgn0039713 FBtr0085489 1 1 1 155 3R 25688837 25688855 ATGAAGAAGTACCTGGAGC 58 25689192 25689210 GAATTCCAACTCCTTGCCT 59 NA DesignNoJunction Drosophila melanogaster 50 Hrb98DE FBgn0001215 FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301 3 4 6 95 3R 24429337 24429355 CAATCAAGGCAACTATGGC 59 24429413 24429794 TTACTTTATCACCTCGTCCG 59 NA InUTR Drosophila melanogaster 50 CG12883 FBgn0039538 FBtr0085216 2 1 1 62 3R 23505142 23505230 GTTCGAGCAAGAACAAGAC 59 23505256 23505274 CAGTCATGTTACTGCATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6452 FBgn0039438 FBtr0085054 2 1 1 76 3R 22451951 22451970 CTTCGTCAAGTACAGGACTC 59 22451894 22451912 CTCCCAGGTTATCGTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14238 FBgn0039429 FBtr0085014 3 1 1 82 3R 22285333 22285416 ATCACAAGGAGGAACATACAG 59 22285459 22285478 CAGGATCACATTGAGTACGA 59 NA Drosophila melanogaster 50 Hex-t2 FBgn0042710 FBtr0085011 1 1 1 60 3R 22277008 22277114 AATGTGGTGAGTCTTCTCC 58 22277136 22277156 CGGTATTGATCTTTAGATCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34110 FBgn0083946 FBtr0110797 1 1 1 80 3R 20995952 20995971 AACCCAAACTTAAGTTCAGC 58 20995831 20995911 CTTCTTCAAACTGTCTCATCC 58 NA Drosophila melanogaster 50 CG13641 FBgn0039239 FBtr0084729 1 1 1 60 3R 20690089 20690107 TCGCCTGGATACTACTCTC 59 20690047 20690066 GATTCTTGTGCGGATAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5805 FBgn0039223 FBtr0084743 3 1 1 101 3R 20611625 20611702 CTATCAGGACGAACTGTTCC 59 20611543 20611564 GTTAGTATTGTCGTTGTGAAGC 59 NA Drosophila melanogaster 50 sec10 FBgn0027103 FBtr0084547 2 1 1 80 3R 19962226 19962244 AAGACGAACATCATTGTCC 57 19962286 19962364 GTACTTGGGTGTATTACTCAC 57 NA Drosophila melanogaster 50 cnc FBgn0000338 FBtr0084392,FBtr0084393 2 2 7 90 3R 19023680 19023698 GTGAATACATACGCTTGCC 58 19023544 19023627 GGATCGTTGGATAAATCGTC 58 NA Drosophila melanogaster 50 unk FBgn0004395 FBtr0084403,FBtr0084402 3 2 2 144 3R 18981726 18981807 ATACAAGTACAGGTCCACTC 58 18981601 18981619 GGTCGACTTGTAGATCTCC 58 NA Drosophila melanogaster 50 Or94a FBgn0039033 FBtr0084341 2 1 1 60 3R 18813738 18813816 ATTAGAAGCCTAACCCTGAC 58 18813836 18813857 TGATCTGAGATAGGATATAGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31159 FBgn0051159 FBtr0084270 3 1 1 82 3R 18440605 18440680 TACGACTGCTTTGGAACAG 59 18440723 18440744 CTAACTAGGGTTAATGGACCAC 59 NA Drosophila melanogaster 50 CG7044 FBgn0038854 FBtr0084035 3 1 1 109 3R 16925092 16925112 ACTCGGAAGTCTATGTAAGAG 58 16924936 16925022 AAGATGGTCTACAAGATCGA 57 NA Drosophila melanogaster 50 CG10830 FBgn0038839 FBtr0083986 1 1 1 285 3R 16722461 16722479 TTAAGTTCCGGAAGCTGTC 59 16722194 16722212 TCATTGTAGTGGTTCCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17271 FBgn0038829 FBtr0083993,FBtr0110823 3 2 2 105 3R 16647077 16647158 CAGCAATACCAATACGAACAG 59 16646992 16647010 GGATTGGTTGATGTTGCTG 59 NA Nonspecific Drosophila melanogaster 50 CG7342 FBgn0038716 FBtr0083777 1 1 1 105 3R 15430349 15430367 TATGGAGCACCAATGTCAC 59 15430436 15430615 CGCATGTACTCCATAACCA 59 NA Drosophila melanogaster 50 CG31244 FBgn0051244 FBtr0083772 2 1 1 60 3R 15224066 15224087 CCGAAATTAGAGAACGATAAGC 59 15224027 15224046 TCTCTGGATTATCCAGAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14286 FBgn0038673 FBtr0083710 2 1 1 77 3R 14850208 14850226 ATCAAATTCACACCTACGG 57 14850267 14850285 CTTTCCAGATGACAGAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14301 FBgn0038632 FBtr0083692 1 1 1 222 3R 14456618 14456730 AATTGCCATGAAACAGTTCG 59 14455785 14455803 GTATGGGATAGTCAACGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5292 FBgn0038491 FBtr0083410 3 1 1 62 3R 12978064 12978082 CCATAGGATCGAGATCACG 59 12978108 12978126 AAATCCTTTAGCAGAGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083351,FBtr0083347 2 2 6 81 3R 12550978 12550996 GGCATATCAACAGACATGG 58 12484784 12536290 GACCATTTGTACCTAGCCA 58 NA Drosophila melanogaster 50 CG14883 FBgn0038432 FBtr0083291 2 1 1 80 3R 12282429 12282523 AGCCATTAAGAAGTGCCTC 59 12282567 12282585 ACGACTATTTCACCACAGG 59 NA Drosophila melanogaster 50 Akt1 FBgn0010379 FBtr0083226,FBtr0083228,FBtr0083227 2 3 3 108 3R 11928589 11928607 GACAAGGAGTTTACGGGAG 59 11928679 11928768 CTCCTTGGTAGCTGAACTG 59 NA Drosophila melanogaster 50 Trax FBgn0038327 FBtr0083093,FBtr0083092 1 2 2 60 3R 11187826 11187844 ATCGCGGTTAACTTTAGGG 59 11187868 11187886 GGAACTGGTAGACATCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gyc88E FBgn0038295 FBtr0083028,FBtr0083027,FBtr0110961 2 3 3 95 3R 11013392 11013410 GGATGAGCTGCTGTATCAG 59 11013469 11013557 ACGCTATCGAACATCTCAC 59 NA Drosophila melanogaster 50 CG34383 FBgn0085412 FBtr0112622,FBtr0112621,FBtr0112624,FBtr0112623 2 4 4 133 3R 9583497 9584191 AACTCTAAGAAACTGGAGCAG 59 9584286 9584304 TTGATGTGAGAGCCATCAC 59 NA Drosophila melanogaster 50 CG14372 FBgn0038156 FBtr0100458 2 1 1 131 3R 9283377 9283463 TGGACGTGAATCTGAAACC 59 9283558 9283576 CTTTCCACCAGGTGATGAG 59 NA Drosophila melanogaster 50 CG14383 FBgn0038102 FBtr0082724 2 1 1 60 3R 8814072 8814090 TCAACATCTTCCAGCAGTC 59 8814030 8814051 AGCAGTAGCATATAGTTTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kar FBgn0001296 FBtr0082666 1 1 1 141 3R 8509987 8510005 TATTTCAAGCGGTACCTGG 59 8509805 8509882 AAACGAGGCTCATTATCCG 59 NA Drosophila melanogaster 50 Hsp70Ba FBgn0013277 FBtr0082679 1 1 1 84 3R 8293417 8293435 CAATCTGCAGTAAAGTGCA 58 8293351 8293369 GCAGATTTCTGTAGTTGCA 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 mthl5 FBgn0037960 FBtr0082515 3 1 1 86 3R 7710597 7710674 CCTACTCTCAGAGATCTGGT 59 7710530 7710548 AATTCTGACAAGGTCTGCT 58 NA Drosophila melanogaster 50 CG6962 FBgn0037958 FBtr0082516 2 1 1 118 3R 7706265 7706283 AGAAGATCTTTGGCGAGTG 59 7706106 7706184 CGCTTGATCAACATTAAACG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Ho FBgn0037933 FBtr0082424 1 1 1 115 3R 7506300 7506375 TTTCCTGAGAAGATCTCTGTC 58 7506452 7506470 AATACGTTGCGACTTTCCT 59 NA Drosophila melanogaster 50 CG6719 FBgn0037893 FBtr0082406 2 1 1 246 3R 7235145 7235163 AAATGGTCAATGTGCTTCG 59 7234856 7234936 GTTGTGATTTGATCCCTCAG 58 NA DesignRelaxed Drosophila melanogaster 50 Gr85a FBgn0045473 FBtr0082216 2 1 1 64 3R 5821411 5821481 GAAGTATCGAATGGCTGTC 57 5821365 5821383 TACGCCAAAGATAGTGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Art4 FBgn0037770 FBtr0082150 3 1 1 95 3R 5809713 5809789 ATCACGCAATTCTTCAAGC 59 5809636 5809654 TAGTGCGGATGCATAAGTC 59 NA Drosophila melanogaster 50 Rpt3R FBgn0037742 FBtr0082165,FBtr0082164 2 2 2 60 3R 5581857 5581876 TTAAAGGAGGAAATTGCCCA 59 5581816 5581837 GATCCAGTCCATCATACTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33189 FBgn0053189 FBtr0081940 2 1 1 60 3R 4605973 4605993 AAGATCGAGTGTAAAGTGGTC 59 4605933 4605951 ATTAGGTTCCTGGCAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mkk4 FBgn0024326 FBtr0081892 2 1 1 61 3R 4474724 4474743 TTTGACATCCTATAACGGCA 59 4474617 4474701 GGCAAGTATTGACAAAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3014 FBgn0037519 FBtr0081773 3 1 1 235 3R 3627045 3627253 TTCACTACCTGTCAAGGAC 58 3626828 3626846 AGTAGAAGTTCCGCTTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 NPFR1 FBgn0037408 FBtr0078590 2 1 1 126 3R 2018360 2018990 GATATCAGGTGATCGTGTACC 59 2019078 2019096 ATCAGCTCCTTGTAGACGA 59 NA Drosophila melanogaster 50 CG11438 FBgn0037164 FBtr0078504 1 1 1 60 3L 22460664 22460682 TTCCTCTTCGTCATGTTCG 59 22460704 22460724 GGTGGTAATAGTCGATGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7597 FBgn0037093 FBtr0078357,FBtr0078358 2 2 2 115 3L 21513430 21513511 TACGGACAGGTTTACAAGG 58 21513590 21513608 TTGATTTCACGAACAGCTG 58 NA Drosophila melanogaster 50 CG33056 FBgn0053056 FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311 3 5 5 132 3L 21191820 21191990 GGAACATATGAGGGAGCAC 59 21191706 21191726 AATTATGTCCACGCTATCCTC 59 NA Drosophila melanogaster 50 CG17145 FBgn0036953 FBtr0074823 3 1 1 112 3L 20214958 20215037 AAATTTGGTGCCATACTGG 58 20215112 20215131 CGGATCACCGTATTATTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14098 FBgn0036884 FBtr0074936 3 1 2 76 3L 19539056 19539243 ATTGTACAGGTTCATCTGTG 57 19539282 19539300 TGATTATTTGTCCCGTGTG 57 NA DesignRelaxed Drosophila melanogaster 50 Chd3 FBgn0023395 FBtr0074998 2 1 1 60 3L 19441038 19441057 ACTACGGTCCAGTAATAAGG 58 19441080 19441098 ATTCAGGTCTATTGTGGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fz2 FBgn0016797 FBtr0112890,FBtr0075029,FBtr0075028 2 3 3 67 3L 19137780 19137800 GAAACTGATGATCAGGATTGG 58 19137733 19137751 ATCCGATAACTATGGTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10424 FBgn0036848 FBtr0075033 3 1 1 78 3L 19090456 19090474 CATCCAGTGCTAGACTGTG 59 19090318 19090414 GTCCAATAACAACGACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6485 FBgn0036706 FBtr0075249 3 1 1 60 3L 17313560 17313580 GAGACCATCAAGATAGATCCA 58 17313520 17313539 AGAACATGGTGTAGAACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33061 FBgn0053061 FBtr0113448 1 1 1 168 3L 16323459 16323477 GATCGAGGAGTCCATTTGG 59 16323609 16323687 AAGTGTTGCTCAACTTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6017 FBgn0036555 FBtr0075518 3 1 1 106 3L 15983411 15983430 CTTTATGGGATTCCTCTGGA 58 15983499 15983571 CGAGAAAGTCATCGAATCG 58 NA Drosophila melanogaster 50 GXIVsPLA2 FBgn0036545 FBtr0075509 2 1 2 193 3L 15948398 15948494 ACCATAGTCCACCTAAGGG 59 15948714 15948732 TTATTCTGAACCGCTCTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Eig71Eg FBgn0004594 FBtr0075573 2 1 1 80 3L 15650982 15651001 ATATTGCGGACGAAATAACC 58 15651042 15651118 ACCATAGTTACTATGCACGAG 59 NA Drosophila melanogaster 50 CG7924 FBgn0036416 FBtr0075740 1 1 1 60 3L 14226881 14226900 AGTCTGATAATAAGGTGCGG 59 14226923 14226941 CCATGGTTAGGGATACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 stv FBgn0086708 FBtr0075806,FBtr0113425,FBtr0075808,FBtr0075809,FBtr0075807 2 5 5 74 3L 13475404 13475422 TAAGCTAGACACCATCGAC 58 13475459 13475543 TGAATGCATTTGATAGCCTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Syx13 FBgn0036341 FBtr0075886 1 1 1 178 3L 13038687 13039327 AGCAGATGGATTTCATCGAG 59 13039468 13039486 CAGTTTGGCAACGATAACG 59 NA Drosophila melanogaster 50 Gr68a FBgn0041231 FBtr0076118 2 1 1 60 3L 11744686 11744704 GGTGGTATTATCGAGTGTG 57 11744728 11744746 GGCAATATCGTGAAGAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gap1 FBgn0004390 FBtr0076368,FBtr0076367 1 2 2 88 3L 9835628 9835646 CTGTGATATACCGCTCCAG 59 9834654 9835577 TGTGCACAATCTTAAAGCAG 59 NA Drosophila melanogaster 50 CG32038 FBgn0052038 FBtr0076462 3 1 1 68 3L 9445254 9445399 GGAGCGGATAACGATACAC 59 9445431 9445449 ACGGAGTAGTTGAAGTACC 58 NA DesignNoJunction Drosophila melanogaster 50 MTF-1 FBgn0040305 FBtr0113323,FBtr0113322,FBtr0076459 1 3 5 104 3L 9427511 9427529 CTCAGTCGCTATAGATGCA 58 9427597 9428973 TTTAAAGCTGTAGTCGCCC 59 NA DesignNoJunction Drosophila melanogaster 50 Rdl FBgn0004244 FBtr0076535,FBtr0076536 1 2 3 101 3L 9152784 9152802 TGAGTAGTGTTGGCATGAG 59 9148402 9152720 AATAGTTGCCTGTGGTTAGG 59 NA Drosophila melanogaster 50 h FBgn0001168 FBtr0076569,FBtr0100153 1 2 2 91 3L 8670523 8670543 CTCAATGAACTCAAGACTCTG 58 8670733 8670751 GTCTTCTCCAGAATGTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6673 FBgn0035906 FBtr0076654 2 1 2 141 3L 8514772 8514849 AAACGATTTGAGAAGCTGC 59 8514649 8514667 TGAAGGCAATGTCGTACTG 59 NA DesignNoJunction Drosophila melanogaster 50 exex FBgn0041156 FBtr0076751 1 1 1 156 3L 7943382 7943400 TCAAGAAGCCAATACCACC 59 7943520 7943673 TTATGACCCATGGGTATCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9948 FBgn0035721 FBtr0076896 3 1 1 60 3L 6949965 6949983 CAGAACGAAGGATTACAGC 58 6950007 6950025 GACTGATTACTCAAGGCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Usp36 FBgn0035633 FBtr0077104,FBtr0077103,FBtr0077099,FBtr0077100 1 4 6 83 3L 5765468 5765543 AGAAGAAGGTATCTGCCAC 58 5765590 5765608 TCATGGAGAATCGCTTCAG 59 NA Drosophila melanogaster 50 sinu FBgn0010894 FBtr0077136 2 1 1 61 3L 5554199 5554217 TTCTTCTACACTTTGGCCT 58 5554156 5554174 ATGAAGACCAGTACTCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4623 FBgn0035587 FBtr0077167 2 1 1 243 3L 5135527 5136193 AGTTCTTATGGTCTTCTACGAG 59 5136454 5136473 CAGCATTTGATCGAATTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG11594 FBgn0035484 FBtr0073283,FBtr0073285,FBtr0073284 2 3 3 123 3L 4023613 4023693 AGTGATTACTGGACTGGAC 58 4023450 4023468 TCTACCGTACTGGTAAAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG32306 FBgn0052306 FBtr0072894,FBtr0072892,FBtr0072893,FBtr0072895 3 4 4 84 3L 2464050 2464068 TGAAACTACCGCAGATCAC 59 2464115 2464134 GAGTAGTGATCCATGGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13936 FBgn0035282 FBtr0072868 1 1 1 80 3L 1851410 1851671 AACGTTCAGTATATGTCGC 57 1851348 1851366 TCAGTAGGAATTGAAGCCA 58 NA Drosophila melanogaster 50 CG17249 FBgn0035249 FBtr0072810 1 1 1 60 3L 1646920 1646941 CCTTCACTAAGAGATTTCTCAG 57 1646881 1646899 CTTTGTTCTTAGCCCTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33230 FBgn0053230 FBtr0072757 2 1 1 60 3L 1619985 1620003 CAATCTAAGGGTTGTGCTG 58 1620026 1620045 GAGGATGTTGGGAAAGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9192 FBgn0035193 FBtr0072734 3 1 1 60 3L 1237924 1237944 TTTAATCCATACGGTGGTCAG 59 1237884 1237902 CGTTATAGCCTCCAAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LysX FBgn0004431 FBtr0072637 1 1 1 73 3L 1195084 1195102 ATGGATCCAACGACTATGG 58 1195029 1195047 GGAGAACTTTCCACTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me28S-A2589c FBgn0086025 FBtr0114301 3 1 1 69 2R 17219094 17219112 ACTGTCACTGATAGTTGGA 57 17219145 17219163 AAATGCGAACATCCTAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ST6Gal FBgn0035050 FBtr0072441,FBtr0072442 2 2 2 253 2R 20579631 20579649 CAACTACGAGCTGTACAGG 59 20579226 20579308 CGGAATTCATCTCTTTGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3511 FBgn0035027 FBtr0072309 2 1 1 80 2R 20459785 20459806 CACATCAAATTCTGGAAGAAGG 59 20459845 20459922 TGATTTGATGGGTACTAGGTG 59 NA Drosophila melanogaster 50 CG13557 FBgn0034867 FBtr0072019 3 1 1 102 2R 19363882 19363901 TATTTCTTCTGGGTCTTGCA 58 19363514 19363818 CATAGCGACTGGTAGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6044 FBgn0034725 FBtr0071823 3 1 2 97 2R 18294763 18294781 TGTGGATATCTATGTGCCG 58 18294971 18294989 CCTTGTACCAGAGAACGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30296 FBgn0050296 FBtr0113369,FBtr0071527,FBtr0113370,FBtr0113371,FBtr0071528 3 5 5 60 2R 16911583 16911601 GAAGAAGTCTACGACTCGG 59 16911625 16911700 TGCTAAGAATGATGGCTGG 59 NA DesignRelaxed Drosophila melanogaster 50 Mgat1 FBgn0034521 FBtr0086259 1 1 1 80 2R 16447789 16447868 AACCTGATTAGAATCGAAGGTC 59 16447730 16447748 ACCCAGCATCTTAGTTGTC 59 NA Drosophila melanogaster 50 Obp56c FBgn0046879 FBtr0086479 3 1 2 60 2R 15588018 15588036 ATCTGAAGCATAATGAGCC 57 15587976 15587995 AAATCCAGGGTCTCATACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30115 FBgn0050115 FBtr0086717 2 1 2 87 2R 14446959 14447037 CATCAAGGGATACCTGCAG 59 14446890 14446909 AATCTCTTCAATGTTGGCGA 59 NA Drosophila melanogaster 50 CG5742 FBgn0034304 FBtr0086780 1 1 1 60 2R 14037958 14037976 GCGATACGAGGAATCAGAC 59 14037916 14037936 CAGTATATCGGTCGACATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30110 FBgn0050110 FBtr0086820 1 1 1 60 2R 13768648 13768669 GTTAGTAACCCAAAGGTTAGAG 58 13768609 13768630 CATTCGCATCTTTAGGTTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lack FBgn0029006 FBtr0086833 3 1 1 80 2R 13481495 13487361 GCAAGGATTTATTTCGTCTACC 59 13487401 13487420 TTATTTCCGTCGAGTACACC 59 NA Drosophila melanogaster 50 CG4398 FBgn0034126 FBtr0087157 2 1 1 60 2R 12320223 12320241 TCGAGTTCAGAGTTCACAC 59 12320265 12320283 GCGTTAGTATTTCACGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cato FBgn0024249 FBtr0087183 3 1 1 82 2R 12165445 12165465 GTCCATTGACCAGAAATTGTC 59 12165383 12165401 TGTTGAGAAGATCGCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jhedup FBgn0034076 FBtr0087222 2 1 1 80 2R 12004989 12005064 GTCTACAGACCGAAGAATCG 59 12005107 12005125 AGATCCGCTAAAGAAACCG 59 NA Drosophila melanogaster 50 Asph FBgn0034075 FBtr0087218,FBtr0087221,FBtr0087220,FBtr0087219 1 4 4 219 2R 11999636 11999708 TGAAGACGAAGACGAAGAG 59 11999891 11999909 TTCTACAGTTGCCTCTACG 58 NA DesignRelaxed Drosophila melanogaster 50 CG8102 FBgn0034007 FBtr0087393 3 1 2 125 2R 11185422 11185497 ATGGATCATGAAGCAGTGG 59 11185315 11185333 TCATGTCGCAGGATATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mars FBgn0033845 FBtr0087668 2 1 1 78 2R 9391978 9391996 TTTACGCGTTACTCAGTGG 59 9392038 9392113 CTTCTTTAACCGTCGTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cid FBgn0040477 FBtr0087667 1 1 1 71 2R 9373779 9373797 CCTACATGCTAACCAAGCA 59 9373832 9373850 AGATGTAGGCCATCAATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13148 FBgn0033767 FBtr0087847 2 1 2 61 2R 8574566 8575103 AATGTCGAGGATAATGAACCC 59 8575126 8575144 TCATCATCCAGGTCATCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG34054 FBgn0054054 FBtr0100109 3 1 1 89 2R 7297500 7297602 TAATACTTGCTGGCCAGTC 59 7297429 7297447 TGGAGCTTACTACATTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30033 FBgn0050033 FBtr0088117 1 1 1 74 2R 7180097 7180115 GATCATCACTCCGTCACTG 59 7180153 7180230 ATGCCAGTGAAGTATGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13216 FBgn0033591 FBtr0088193 1 1 1 60 2R 7126000 7126018 CCCATGTATGGAAACTCCC 59 7125958 7125976 TGGGCACAAATCCATTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12902 FBgn0033512 FBtr0088357 1 1 2 263 2R 6242781 6243011 TCTTAGACAGCGATTCCAG 58 6242536 6242554 GTCAGTCCTACTTCTTGGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12911 FBgn0033501 FBtr0088336 2 1 1 106 2R 6146864 6146882 ATGGAGGATCATACGATCG 58 6146952 6147034 ATCGTAGTAGCGATCTCTG 58 NA Drosophila melanogaster 50 unpg FBgn0015561 FBtr0088586 2 1 1 73 2R 5083611 5083629 ACATTAGCCTGACCATGTC 59 5083665 5086598 ATTGGTATAGGCTCCATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sep5 FBgn0026361 FBtr0088876,FBtr0088877 3 2 2 60 2R 3848536 3848555 GTTTAAGGAACGCATAATGG 57 3848495 3848513 GGGAAACTGGTATATGCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lin19 FBgn0015509 FBtr0088845,FBtr0088847,FBtr0088848,FBtr0088846 1 4 4 93 2R 3806337 3806416 GCGAAGAGGTTCTTATCGA 59 3806473 3806491 ATCCGTTTCAGATCATCGT 58 NA Drosophila melanogaster 50 CG12824 FBgn0033222 FBtr0088830,FBtr0113050 2 2 2 293 2R 3678003 3678082 GAATTATCCTACGCATTTGGAG 59 3678389 3678407 CATAGAATGCCATTCCGAG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Ogt FBgn0040295 FBtr0086085,FBtr0086084,FBtr0086086 3 3 3 80 2R 1208104 1213313 GCACGAATATTTGATAGAGCTG 59 1213354 1213372 ATTGCCATGAACTACAGCA 59 NA Drosophila melanogaster 50 snRNA:U4:39B FBgn0003930 FBtr0081489 2 1 1 85 2L 21215133 21215151 CAATGAAGTCCTCCTGAGG 59 21215066 21215084 TAGTGGACGGTATTTCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3635 FBgn0032981 FBtr0085951 3 1 1 126 2L 22183365 22183384 CTGATATGTGAGCACATCTG 58 22183614 22183632 ATCATACTGTCGGAAGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG31751 FBgn0086909 FBtr0081092,FBtr0081093 1 2 2 69 2L 18682373 18682446 GATGCTGCTTTACTTGGGA 59 18682478 18682497 ATACTTTCCTGTTGCATTGG 58 NA DesignNoJunction Drosophila melanogaster 50 amos FBgn0003270 FBtr0081081 1 1 1 67 2L 18596360 18596378 TACGAAACTCTGCAAATGG 58 18596311 18596329 TAGTAGTCTCTGGACAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 qua FBgn0003187 FBtr0080997,FBtr0080996 1 2 2 96 2L 17489498 17489518 CGTATCTGGGAAACATATCCT 59 17489361 17489440 GATCGAACATCGTAACCCT 59 NA Drosophila melanogaster 50 CG12455 FBgn0028859 FBtr0080823,FBtr0080822 2 2 2 92 2L 16237369 16237387 TGGGTGTTAATGGCTACTC 58 16237443 16237525 TCATCTTTCCATTGGTCCC 59 NA Drosophila melanogaster 50 CG12448 FBgn0028857 FBtr0080795 2 1 2 128 2L 15942409 15942486 ACTATTCAACCAAACGTCG 58 15942578 15942596 TAATGTTACGATCCTGTGC 57 NA Drosophila melanogaster 50 yuri FBgn0045842 FBtr0080711,FBtr0100613,FBtr0080712 2 3 7 174 2L 15261626 15261725 TGGAAATTGAATGCGATACG 58 15261471 15261491 GTCCTAAACGTTGTAGTTGTG 59 NA Drosophila melanogaster 50 cenG1A FBgn0028509 FBtr0080548,FBtr0080546,FBtr0080547 2 3 3 149 2L 13896606 13896624 AGGAGATCTTCAAGAGCCT 59 13896737 13896819 TAGCCCATTCAGGATTTGG 59 NA Drosophila melanogaster 50 Rep4 FBgn0028406 FBtr0080478 2 1 1 131 2L 13285634 13285706 TCATTACAACAGATGCCGA 58 13285521 13285539 CATACTCCGTTATCATGCG 58 NA Drosophila melanogaster 50 PICK1 FBgn0032447 FBtr0080396,FBtr0080395 2 2 2 98 2L 12696293 12696314 TCGTCATTACAAAGGATCAGAG 59 12696373 12697478 TTCCATCGAAGATCTGCAC 59 NA Drosophila melanogaster 50 CG4972 FBgn0032217 FBtr0079988 2 1 1 115 2L 10316274 10316292 CACCGAAGTATCGACTCAG 59 10316371 10316453 CACAAACTCAACGTTCTGC 59 NA Drosophila melanogaster 50 CG18619 FBgn0032202 FBtr0089738,FBtr0089735,FBtr0089737,FBtr0089736 3 4 4 200 2L 10264619 10264767 TGAAAGCCAAACTAGAACG 57 10264990 10265010 GAAGTAACTGGTCATTGTTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG18619 FBgn0032202 FBtr0089738,FBtr0089737 1 2 4 199 2L 10264620 10264768 GAAAGCCAAACTAGAACGC 59 10264990 10265010 GAAGTAACTGGTCATTGTTGG 59 NA Drosophila melanogaster 50 CG13101 FBgn0032084 FBtr0079783,FBtr0079784 2 2 2 83 2L 8978779 8978870 CCAGAATATGCGGATAAACTG 58 8978716 8978736 CAGAGATATGATGTGCATACC 58 NA Drosophila melanogaster 50 poe FBgn0011230 FBtr0079545 3 1 1 81 2L 8056363 8056381 TCTTATTCGTGTCCTAGCC 58 8056245 8056319 CAAAGTGTCCTTGAAATGCT 58 NA Drosophila melanogaster 50 CG7115 FBgn0027515 FBtr0079523,FBtr0079524 1 2 2 125 2L 7822989 7823007 TCAAGATGATGGAGCTGTC 59 7823092 7823465 CCTCGATAATAAACCTATCCTCC 59 NA Drosophila melanogaster 50 CG3476 FBgn0031881 FBtr0079389 3 1 1 108 2L 7028577 7028595 CATCAACTATTCTGTCCGG 57 7028727 7028745 TTGTATGTTCCCTCAGGTG 58 NA DesignNoJunction Drosophila melanogaster 50 Hrb27C FBgn0004838 FBtr0079347,FBtr0079348,FBtr0079346 1 3 3 169 2L 6924245 6924263 ACCTTCTTTAACCGCTACG 59 6924396 6924698 TTCTTGATTTCGACCTGCT 59 NA Drosophila melanogaster 50 CG11015 FBgn0031830 FBtr0079288 2 1 1 285 2L 6558501 6558519 GACATGAAGGTCTTCAAGC 58 6559115 6559133 ATTTGGACAGCTAAGTGGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG9511 FBgn0031810 FBtr0113025 2 1 2 95 2L 6408282 6408300 AGATACTGGAAGTGAAGGC 58 6407521 6407541 GGGTATTTAAAGTGGGAAAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9147 FBgn0031774 FBtr0079190,FBtr0079189 1 2 2 144 2L 6067221 6067292 GGTACTTGAGAAGCTGGTG 59 6067399 6067418 CTTCTCCAGACGGTATTGAC 59 NA Drosophila melanogaster 50 bchs FBgn0043362 FBtr0079144 1 1 1 80 2L 5912387 5912470 TCTAAGCGTCAGTTTCTCTG 59 5912511 5912531 GCAATACTGTATAGTAGCCGA 59 NA Drosophila melanogaster 50 CG11147 FBgn0031734 FBtr0079165,FBtr0079166 2 2 2 81 2L 5735111 5735129 TCCAGGAACCAATCTTTGG 59 5734812 5735068 AAGAAGACCATGGTCATTACC 59 NA Drosophila melanogaster 50 Sr-CIII FBgn0020376 FBtr0077466 1 1 1 133 2L 4121075 4121094 GCCATTCCTTATGGTTTCAG 58 4121187 4121268 GAGTTTGGTGCAGATATTTCTG 59 NA Drosophila melanogaster 50 CG31959 FBgn0051959 FBtr0077488 2 1 1 186 2L 3758662 3758742 GATATTCGGGAACAGTACTG 57 3758891 3758909 TTTCAAATGGAGCATAGGC 58 NA Drosophila melanogaster 50 CG34394 FBgn0085423 FBtr0112638,FBtr0112640,FBtr0112641,FBtr0112639 2 4 4 81 2L 3364931 3365435 TGATTGTGGACTACTCGTG 59 3364868 3364886 AAGCAGACGTAGTTCTGTG 59 NA Drosophila melanogaster 50 CG17221 FBgn0031500 FBtr0077654 2 1 2 218 2L 3040732 3040801 TCATACTGTCTTGCTCCTG 58 3040982 3041001 GGACTTGAGGATTTGTATGG 57 NA DesignRelaxed Drosophila melanogaster 50 CG31689 FBgn0031449 FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706 3 4 4 83 2L 2738710 2738728 AGGAGACCTTCAACAACTG 59 2738773 2738878 AGAAGATGATATGGACTGGTG 58 NA Drosophila melanogaster 50 CG10869 FBgn0031347 FBtr0113010 1 1 2 151 2L 1586773 1586854 TACTGACCTTGGGTAACAC 58 1585158 1585176 ATAGTATCCCATGATGCCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG18131 FBgn0031343 FBtr0077939,FBtr0077937,FBtr0077934 2 3 6 172 2L 1499602 1499623 GTGCCTCTATATGAAAGAAGAC 58 1499315 1499333 TGATGCTGATGATGTTGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG3883 FBgn0031281 FBtr0078041 2 1 1 82 2L 815216 815289 TGGGAGCTGATCAATAATGTC 59 815154 815172 TTTAGCACTTCGTTCACCA 59 NA Drosophila melanogaster 50 Eaat2 FBgn0026438 FBtr0078043 2 1 2 86 2L 740682 740812 GGTGTAATACTAGGACTCTCCT 59 740617 740635 CATAAACAGTTCGCCAGGA 59 NA Drosophila melanogaster 50 CG2839 FBgn0031273 FBtr0077999 3 1 1 60 2L 626021 626039 AGAAATCCTTACGGAAGGC 59 626060 626081 GAAACATTTCTGGTATCCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ets21C FBgn0005660 FBtr0112854 3 1 2 258 2L 548208 549034 TCTTCAATGATCCGTACCAG 59 547892 547987 TAGTAGTACCTGAGTGCCC 59 NA DesignRelaxed Drosophila melanogaster 50 tRNA:Y1:85Ac FBgn0012026 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me18S-G962 FBgn0086077 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Cyp311a1 FBgn0030367 FBtr0073640,FBtr0073639 2 2 2 108 X 11924493 11924511 CAAATTCGAGGGTCAATCG 58 11924350 11924369 ATATAGCACAAACGACATGG 58 NA DesignNoJunction Drosophila melanogaster 50 CkIIbeta FBgn0000259 FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559 1 5 6 162 X 11689033 11689147 TGTTCCAAGGCTATATGGA 57 11689687 11689705 TTGTATTCGTGCGTATGTG 58 NA InUTR Drosophila melanogaster 50 CG3032 FBgn0029928 FBtr0071032 1 1 1 60 X 6907576 6907595 GAATCCGTACGAGAACTCTG 59 6907535 6907553 TCTTCAAGGGTTCCTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SK FBgn0029761 FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070769,FBtr0070766 3 5 7 96 X 5292152 5292440 AACTGACATGGCTAAGACAC 59 5292498 5292517 CTCTAGGTTGGTTAAACGCT 59 NA Drosophila melanogaster 50 CG32773 FBgn0052773 FBtr0070703 1 1 1 60 X 4282037 4282055 ACAAGGACATCGAGATGTC 59 4281995 4282013 GGAAGAAGGACGAAGTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15570 FBgn0029697 FBtr0070645 3 1 1 90 X 4115320 4115407 TAATGCTAACATCGATCCTAGC 59 4115458 4115476 ATTAGCCAATGCATCAACG 58 NA Drosophila melanogaster 50 CG14047 FBgn0040390 FBtr0070465,FBtr0070464 2 2 2 205 X 2262912 2262931 TTTATAAAGCGTCGCAACTC 58 2262667 2262744 GATGGCTTGTCGTTATCCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG17691 FBgn0039993 FBtr0113760,FBtr0113759,FBtr0113761 2 3 4 102 U 1184287 1184359 CATGTGCTATTAGAAGTAGCAG 58 1184422 1184440 AAATGGTAATAGCGTCCCA 58 NA InUTR Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 3 8 8 80 4 671648 672941 TAACAGCACAGATTGATGGT 59 671587 671605 TCAAATACGGGTGAAAGCT 59 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 3 7 7 85 4 208987 209060 CGGATCATAGACTTACGGA 57 208920 208938 ATCGAAGCATGGTTTAGTC 57 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 3 14 14 110 3R 27690344 27690864 TAAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 hdc FBgn0010113 FBtr0085621,FBtr0085619 2 2 3 139 3R 26105940 26105958 GGAGGTCGAACTCTATTCC 58 26134965 26183984 CCTCGTCCTCAATCTTGAC 59 NA Drosophila melanogaster 50 Hrb98DE FBgn0001215 FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301 3 4 6 95 3R 24429337 24429355 CAATCAAGGCAACTATGGC 59 24429413 24429794 TTACTTTATCACCTCGTCCG 59 NA InUTR Drosophila melanogaster 50 CG5611 FBgn0039531 FBtr0085199 3 1 1 64 3R 23460979 23460997 CAATGCCTACAACAAACCA 58 23460933 23460954 CTGAGGTAACATTCATGATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpn9 FBgn0028691 FBtr0084469 2 1 2 117 3R 19558592 19558611 CTAATGTCACCGCCTATCTG 59 19558439 19558457 TTGATGGTCAGCTCATTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33107 FBgn0053107 FBtr0084279 2 1 1 108 3R 18410053 18410071 GATGATGACGTACCAAAGG 57 18409905 18409981 GTAGAACATCTCCTCCGAG 58 NA Drosophila melanogaster 50 Surf4 FBgn0019925 FBtr0083118,FBtr0083117 3 2 2 82 3R 11170644 11170663 GATTTAAGGTCGACATAGCG 58 11170516 11170534 GAAGTCCCACAGAATGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6904 FBgn0038293 FBtr0083037,FBtr0083035,FBtr0083036 3 3 3 98 3R 10968575 10968688 TGGGCATTTACTACAGACAG 59 10968496 10968515 TCAAGTTGTTCTTCGATCCA 59 NA Drosophila melanogaster 50 CG7381 FBgn0038098 FBtr0082727,FBtr0082726,FBtr0082725 1 3 3 80 3R 8795258 8795366 CGATGAGAAGAAGTATGGC 57 8795196 8795215 TTCTTGGAACAAATCGAGTG 58 NA Drosophila melanogaster 50 CG14687 FBgn0037835 FBtr0082280 1 1 1 66 3R 6618817 6618835 CATTAAGATTCAGGCCGGA 59 6618865 6618883 ATTCTTGCTGGATCGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10092 FBgn0037526 FBtr0081752 2 1 1 166 3R 3714212 3714291 ACATAAGTGCCACTACCAG 58 3714421 3714439 CTTGATTCCTGTGTCACCA 59 NA Drosophila melanogaster 50 CG18748 FBgn0042105 FBtr0113344,FBtr0113345 3 2 2 191 3R 3612901 3612979 ACTCTGTTTCACAGGTTCC 59 3612728 3612747 ATAGTCCAACCTTCACTTCG 59 NA Drosophila melanogaster 50 plx FBgn0004879 FBtr0078718,FBtr0078719 1 2 2 80 3R 1536521 1536539 ACCATCACCTAGAAATGCT 58 1536583 1536668 TCGAAGATTGAGCAAACTG 58 NA Drosophila melanogaster 50 CG2016 FBgn0037289 FBtr0078847 3 1 1 98 3R 782940 783024 AACACAGTGATACAGGCTG 59 782860 782878 CAGAGTGAGTTTGGTCCTG 59 NA Drosophila melanogaster 50 CG33056 FBgn0053056 FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311 2 5 5 131 3L 21191820 21191990 GGAACATATGAGGGAGCAC 59 21191707 21191726 ATTATGTCCACGCTATCCTC 59 NA Drosophila melanogaster 50 chb FBgn0021760 FBtr0089462,FBtr0089460,FBtr0089461 3 3 3 60 3L 21173982 21174000 GGCTCTTCATCTTGTTGAC 58 21174023 21174042 ATCGAATTGAGTAGATCGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5567 FBgn0036760 FBtr0075161 2 1 1 60 3L 17836429 17836447 CTCCTGGAATTATCCTCCG 58 17836387 17836406 TTATTACACTGTCGAAGCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34248 FBgn0085277 FBtr0112442 2 1 1 118 3L 16263663 16263682 TATCCTTTGTTCTACCCAGC 59 16263564 16263582 TCCTTTGACCACCTTATGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG10743 FBgn0036376 FBtr0075814,FBtr0075813 2 2 2 102 3L 13507881 13507899 CTGCTATGAGGACAATTGC 58 13508023 13508044 CATCTTTAGGTTTAGCTCTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG10960 FBgn0036316 FBtr0075942,FBtr0075943,FBtr0075941 3 3 3 134 3L 12820167 12820185 TATCCTGTTCGTCTATGCC 58 12819717 12820070 TCTTTGGAAACCAAGTAGGT 58 NA Drosophila melanogaster 50 CG3967 FBgn0035989 FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480 1 5 5 116 3L 9411532 9411550 AACAATTTCGTGCTCTACG 58 9410905 9411452 TGTGTTAGGACTGTTTGTG 57 NA Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780 2 8 8 127 3L 7811267 7811287 CAGATGACAAATACAAGGAGG 58 7810754 7811178 GTCGGCATATTGTGTTACC 58 NA Drosophila melanogaster 50 Uev1A FBgn0035601 FBtr0077155,FBtr0077156 2 2 2 139 3L 5357292 5358043 AACACCATTCGAGAATCGA 58 5357103 5357189 ATCTATGATCAACCACGCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG14959 FBgn0035427 FBtr0073049 1 1 3 80 3L 3267485 3267504 AGCTTTAACCAGGAGTACAG 59 3267545 3267682 ATCGTTCAGTAATCTTACGGG 59 NA Drosophila melanogaster 50 CG11537 FBgn0035400 FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117 2 5 5 82 3L 3130293 3130312 GAGGTCTCGGTCTTTATAGC 59 3130170 3130248 CCAAACACTTGCATGAAGG 59 NA Drosophila melanogaster 50 CG11537 FBgn0035400 FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117 2 5 5 82 3L 3130293 3130312 GAGGTCTCGGTCTTTATAGC 59 3130170 3130248 CCAAACACTTGCATGAAGG 59 NA Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 2 8 8 81 2R 19817734 19817752 TCCATCTTCCTTACTGCTG 58 19817612 19817691 CATCAGTAACCAAGTTAACCC 58 NA Drosophila melanogaster 50 RpS16 FBgn0034743 FBtr0071855 1 1 1 154 2R 18494546 18495270 CCAGAAATACGTCGATGAG 57 18495388 18495406 TTTAACGGTACGACTTCTG 57 NA Drosophila melanogaster 50 Obp46a FBgn0033508 FBtr0088359 3 1 1 64 2R 6199173 6199191 ATACGAGACGGATGAAGAG 58 6199076 6199094 TACTGTTGAAACTGCACTC 57 NA DesignNoJunction Drosophila melanogaster 50 Mmp2 FBgn0033438 FBtr0088500 3 1 2 140 2R 5545212 5545230 TTGACATGAAAGAGTCACG 57 5530973 5545110 GATACATACCCATCAAGAAGG 57 NA Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 1 9 9 90 2R 4568146 4568164 AGATCAAGACCTGCTTGTG 59 4568217 4568299 ATATCACGGTAGTCCATGAC 58 NA Drosophila melanogaster 50 Optix FBgn0025360 FBtr0088865,FBtr0088866 3 2 2 124 2R 3929497 3929515 ATCACATGATATCAGCGGG 59 3929603 3929621 GAATAGCTGGGCCTTAGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG30437 FBgn0050437 FBtr0086065 3 1 3 117 2R 1328564 1341070 TAGTCGATGAAGTTGTGCC 59 1341150 1341169 AAGTATTCGGGAGGAATGTC 59 NA Drosophila melanogaster 50 CG17082 FBgn0039994 FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289 2 6 6 90 2R 644086 644172 TCTATTGGTCGATCAAAGGAG 59 644224 644242 CATTCTCTGAGGCTGACAG 59 NA Drosophila melanogaster 50 CG41436 FBgn0084003 FBtr0111260 2 1 1 80 2L 22078343 22078361 TATACTTTATGGCGCCAGG 59 22078405 22078423 TTGTATCGCAATCACTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33807 FBgn0053807 FBtr0091811 1 1 1 70 2L 21432295 21432313 AAATTTAGAGGAACGTGGC 58 21432346 21432365 CGCATTTATAAGTGGCAGTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Hr38 FBgn0014859 FBtr0081397,FBtr0081398 2 2 2 208 2L 20687063 20687264 TAACCCTGATCACAGAACG 58 20686873 20686892 CAGCTTCAGGTAGAAGATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG16771 FBgn0032779 FBtr0081204 2 1 1 60 2L 19428124 19428145 CAGAGCATAAACGTAATCATGG 59 19428166 19428184 AACCGGTTACATCTGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst35Ba FBgn0013300 FBtr0080682 3 1 1 141 2L 14879255 14879274 GCTCTCGGAGAATAGAAAGG 59 14879084 14879102 GGAAAGGATATGCCTGGAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15293 FBgn0028526 FBtr0080603 1 1 1 60 2L 14108334 14108352 ACAAGTGAATCTGAGTGCC 59 14108292 14108312 AATAGTCTTGACCACTTCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14928 FBgn0032362 FBtr0080238 1 1 1 180 2L 11507298 11507316 CAAGTCTGGACTGCTAAGG 59 11507517 11507537 GAAGGGATAGAGATTGAGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13136 FBgn0032186 FBtr0079965 2 1 1 65 2L 10136693 10136711 GACAACACAGTGCAATACG 59 10136646 10136667 CTGTAATCTTCACTTGCATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13135 FBgn0032184 FBtr0079966 1 1 1 118 2L 10122713 10122731 ATCACTACTGATCGTTGGC 59 10122613 10122631 TATCTGTGCAATCGATGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gcm2 FBgn0019809 FBtr0079838,FBtr0079837 2 2 2 83 2L 9611428 9611447 TTAGCAAGGTTCTTAAGCGT 59 9611493 9611570 TGCCACAGGCATTATACTG 59 NA Drosophila melanogaster 50 nrv2 FBgn0015777 FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382 3 5 5 89 2L 6791573 6791591 TTTGATCTGGTACAAGGGC 59 6791308 6791520 CCAGGTACTTTGTACACCG 59 NA Drosophila melanogaster 50 cort FBgn0000351 FBtr0079320 1 1 1 80 2L 6675693 6675770 AAACTATCCAGTTCTGGACC 59 6675632 6675650 GACTTGAAGAACAGCTTGC 59 NA Drosophila melanogaster 50 CG33995 FBgn0053995 FBtr0100048,FBtr0100050,FBtr0100049 3 3 3 80 2L 5045911 5046150 TTATCGGCGCTAGAAATCC 59 5046193 5046212 CATGTACTCGTTGTAGTCCT 58 NA Nonspecific Drosophila melanogaster 50 vkg FBgn0016075 FBtr0079036 1 1 1 81 2L 5013429 5013509 CAGTTACTTCATGAGCACCT 59 5013367 5013385 GAACTCCTCCAAGCAAGAG 59 NA Drosophila melanogaster 50 Rtnl1 FBgn0053113 FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039 3 7 7 144 2L 4994705 4994794 CCCTTTAAGGATTACCTGGA 58 4994580 4994601 TGATCGAATCGATGATATCCTC 59 NA Drosophila melanogaster 50 capu FBgn0000256 FBtr0077511,FBtr0077513,FBtr0077512,FBtr0077510 1 4 4 85 2L 3879058 3884044 AGTTCGAAGGTCAAATGCT 59 3878991 3879009 TTCCTGATTAGCATCACCG 59 NA Drosophila melanogaster 50 CG12506 FBgn0031276 FBtr0078003 1 1 1 67 2L 773848 773866 ACAGTACCACAACTTCGAC 59 773897 773915 CGAAGAGGAAACCTCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10993 FBgn0030524 FBtr0073837 3 1 1 123 X 13684735 13684812 CAGAAGCTGTCAAGAAAGC 59 13684630 13684648 TCTTGTGCGTGGATATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2124 FBgn0030217 FBtr0071491 2 1 1 90 X 10492008 10492026 GATAAGGATCGTTTCACCG 57 10492080 10492364 ACTCGTGCCAATAGATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3699 FBgn0040349 FBtr0070186 1 1 1 117 X 841163 841181 GTCATTCTGTTGACCAAGG 58 841064 841082 AAACTCCATAGCTCAGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7896 FBgn0039728 FBtr0085545 1 1 1 93 3R 25812819 25812837 ACTTCTTCGGTCAGTTTCC 59 25812894 25812976 TAGTCCAATTGCTGTAGCA 58 NA Drosophila melanogaster 50 m4 FBgn0002629 FBtr0084980 1 1 1 104 3R 21850135 21850153 CTACAGCGTGAAGAAACTG 58 21850049 21850067 AGAGACTCCAAAGAGTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13830 FBgn0039054 FBtr0113272 3 1 1 91 3R 18901583 18901601 ATGCCCAGTACACTTTCAC 59 18901444 18901529 CTTGGAGTCCTTCTTGTAGG 59 NA Drosophila melanogaster 50 CG4570 FBgn0037844 FBtr0082287 1 1 1 60 3R 6683264 6683285 CATGGACGATCTTAAATTCGTC 59 6683306 6683324 CGAGTCAAGGAAGATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6838 FBgn0037182 FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186 3 4 4 88 3L 22709292 22709405 TCAGTAAGGATCCAAACCC 58 22709222 22709240 ATTAAGCAGATTCACGCTG 58 NA DesignRelaxed Drosophila melanogaster 50 CS-2 FBgn0029091 FBtr0078476,FBtr0114557 2 2 2 102 3L 21959332 21959350 CTTGGATGAGGATCAATGC 58 21959413 21960242 GTCGAAGAAGATGTTAGTTTCC 59 NA Drosophila melanogaster 50 CG9425 FBgn0036451 FBtr0075693,FBtr0075692 2 2 2 74 3L 14786338 14786356 ACCAGAAGGTGATCATGAG 58 14786872 14786890 TGTCCAGTGTATAACCACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32111 FBgn0052111 FBtr0075910 2 1 1 92 3L 12638263 12638282 GATATCGTCATTCAGCTTCG 58 12638394 12638471 GTGAGATATCATGTTCTCTAGC 57 NA InUTR Drosophila melanogaster 50 PHGPx FBgn0035438 FBtr0073068,FBtr0073066,FBtr0073065,FBtr0073067 2 4 4 64 3L 3328289 3328307 ATACCTAAAGGCCAAGCAG 59 3328334 3328353 GAAACTTGGTGAAGTTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3611 FBgn0035069 FBtr0072377 3 1 1 89 2R 20686776 20686794 GATCTATCTGACGAGTCGC 59 20686846 20686865 GTAACCACGAACTTCTTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slbo FBgn0005638 FBtr0072272 2 1 1 240 2R 20220863 20220881 TGATAGACGACCAGTTCAG 58 20220641 20220659 CTGGAATTGTTGTAGGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PIP5K59B FBgn0034789 FBtr0071901,FBtr0110862,FBtr0071900 2 3 3 100 2R 18763724 18763743 TATATTCTACCTGACGACCG 58 18763803 18763886 GATTCATATAGTAACCAGGCAG 58 NA Drosophila melanogaster 50 CG33981 FBgn0053981 FBtr0100025,FBtr0100026 3 2 2 148 2R 13668908 13668926 GACCAGATTCTAGTGCCAC 59 13668717 13668735 TTCAGTTGATCGATGAGGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG10131 FBgn0033949 FBtr0087499 1 1 1 123 2R 10517722 10517740 GAAGAGTCTGTACTCGCAG 59 10517827 10517901 CACTAGCATCTGTTGTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12869 FBgn0033943 FBtr0087496 2 1 1 174 2R 10480530 10480719 CAACGAACTACGATTTGCTC 59 10480856 10480874 AATGTTCAGGTACAGGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Kua FBgn0032850 FBtr0081336 2 1 1 135 2L 20102121 20102205 GACCAATCAGATACACAAGTG 58 20102302 20102320 AAAGTAGGTCTCATGTGGC 59 NA Drosophila melanogaster 50 CG13385 FBgn0032039 FBtr0079660 1 1 1 60 2L 8397270 8397289 ATGTACTAACACCATTGACC 57 8397311 8397330 CAATGTTTCGTAAATCGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hrb27C FBgn0004838 FBtr0079347,FBtr0079348,FBtr0079346 3 3 3 131 2L 6924283 6924301 TATCATGTACGACCAGGAG 57 6924396 6924698 TTCTTGATTTCGACCTGCT 59 NA DesignRelaxed Drosophila melanogaster 50 Ser12 FBgn0011832 FBtr0077806 2 1 1 60 2L 2250920 2250940 ATAGCCGTAATTAGACTGGTG 59 2250880 2250900 GTTGGATAGGTCTTACTTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mt:tRNA:H FBgn0013695 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mt:tRNA:R FBgn0013704 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG17777 FBgn0040900 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR32129 FBgn0052129 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Ntf-2 FBgn0031145 FBtr0077241,FBtr0113007 3 2 2 97 X 20906739 20907434 TTTCTATAGCGCTACCGAC 58 20907495 20907581 TCTGAAAGCTCAGACTCTG 58 NA Drosophila melanogaster 50 run FBgn0003300 FBtr0077279 3 1 1 76 X 20567172 20567190 GTTCCCATTCAACCATGTG 59 20567228 20567248 CAAAGTTATACGGATGGAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp19c FBgn0031111 FBtr0077326,FBtr0077327 1 2 2 164 X 20289627 20289645 GTAATCGATCGCAACTTGC 59 20289481 20289499 CTTGATCTTCTTGAGCACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 inx6 FBgn0027107 FBtr0077339 3 1 1 60 X 20139582 20139600 CCGAATATCATGGACATCC 57 20139540 20139558 CGAAGATCTTCTCGTTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32537 FBgn0052537 FBtr0074687 2 1 1 190 X 19170264 19170283 GTCATAAAGATTAGCAGCCA 57 19169344 19169362 TTATCATCCACCCAGTCCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG32548 FBgn0052548 FBtr0074569,FBtr0074568 2 2 2 76 X 18330497 18330515 CCTTCCTCGATTATCAGCG 59 18330439 18330457 GTAGTGGTAGAGCTTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 os FBgn0004956 FBtr0112847 3 1 2 71 X 18201313 18201331 GTGGCAACTATCATCCCTC 59 18201185 18201278 TCAGCTGATTGAAGCTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG15814 FBgn0030873 FBtr0074471,FBtr0074469,FBtr0074470,FBtr0074468 2 4 4 98 X 17743221 17743239 CTGATGTTCTGCTTCTACG 57 17743079 17743159 TGTGTAGTAGCCAATAGCT 57 NA Drosophila melanogaster 50 CG12991 FBgn0030847 FBtr0074448,FBtr0074449 2 2 2 114 X 17492122 17492140 ATTGGGATCGTACTGTACC 58 17492218 17492313 CATCCGAATTGTCACTCAC 58 NA Drosophila melanogaster 50 ppk23 FBgn0030844 FBtr0112998,FBtr0100574,FBtr0074491 2 3 3 123 X 17462375 17462393 CAACAGTCGTTTCAAGTCC 58 17462088 17462223 GATAAAGATACGTGAAGTGCTG 59 NA Drosophila melanogaster 50 CG9903 FBgn0030756 FBtr0074297 3 1 1 60 X 16434569 16434587 GTACTCCAAGGATGATCGG 59 16434527 16434548 GAAATCCTCCTTCTTTATCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9911 FBgn0030734 FBtr0074241,FBtr0074242 2 2 4 80 X 16190154 16190350 TAGTTGCGATTCTACAGCT 58 16190092 16190112 CGATATTATCACTGGTCATGG 58 NA Drosophila melanogaster 50 Nipsnap FBgn0030724 FBtr0074258,FBtr0074257,FBtr0074259 3 3 3 278 X 15965372 15965390 TCTTAGCTTGATGCAGGAG 59 15964886 15965070 TGCAGAGATTTGTAACACC 57 NA DesignRelaxed Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 1 9 9 110 X 15788792 15788878 AGTTACCGAATATGGCGAG 59 15788952 15788970 TTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 CG8952 FBgn0030688 FBtr0074193 1 1 1 60 X 15659852 15659870 GGAAGATGAGTACCTGGAC 58 15659810 15659828 GTCAATGATCTCGACTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15601 FBgn0030673 FBtr0074055 2 1 1 60 X 15605319 15605337 ACAGTGTCGGACATAAAGC 59 15605361 15605379 GCAGCTCCTTAGAGTACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32594 FBgn0052594 FBtr0073956,FBtr0073957 3 2 2 104 X 14925094 14925221 GAATAAATCTCCGCATCGA 57 14925289 14925307 TCATGATCATGTCGATGTG 57 NA Drosophila melanogaster 50 Ag5r FBgn0015010 FBtr0073937 3 1 1 68 X 14679660 14679678 CGATATGTGGTACGATGAG 57 14679610 14679628 TTGTAGTTCGACGGATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL38 FBgn0030552 FBtr0073902 2 1 1 111 X 14121428 14121446 CTTCTATCGTCAGCACCAG 59 14121518 14121609 CTCTTTGATCTTCAAGACATCG 59 NA Drosophila melanogaster 50 rdgB FBgn0003218 FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194 3 4 4 84 X 13663020 13663039 CTATTATCCGGACAATGGCT 59 13663083 13663187 GTCAATTACGTCTACGATACGA 59 NA Drosophila melanogaster 50 up FBgn0004169 FBtr0073851,FBtr0100563,FBtr0073852 3 3 6 151 X 13493488 13494115 ATGAAGAGTACACCAGCTC 58 13490712 13490730 TTTCAGCTGATCATCGAGG 59 NA Drosophila melanogaster 50 CG4332 FBgn0030456 FBtr0073726 2 1 1 60 X 13050498 13050516 GTCTATTCGCTCCTCTACC 58 13050540 13050558 CCAGTGAGTTAAGTGTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4318 FBgn0030455 FBtr0073742 1 1 1 60 X 13048639 13048660 GGTCAGTGAGATGAATTATGAG 58 13048600 13048619 CTCAATCAGTTCAACATCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fer3HCH FBgn0030449 FBtr0073745 2 1 1 60 X 13001868 13001886 GATTCTTCCTAAAGGCGAG 57 13001826 13001846 ATGTACGTCATGATCTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CkIalpha FBgn0015024 FBtr0073680,FBtr0073682,FBtr0073681 3 3 3 83 X 12550117 12550136 TCTGAACTATTGTCGTAGCC 59 12550182 12550381 GTTCTGAACAGTATGCGGA 59 NA Drosophila melanogaster 50 tomosyn FBgn0030412 FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678 3 4 4 91 X 12531136 12531154 GAGAAGGGAAACATACACG 57 12531208 12531302 GTTCTAACCACTTCAATTGC 57 NA Drosophila melanogaster 50 ATP7 FBgn0030343 FBtr0073566 2 1 1 84 X 11756032 11756120 ATGCCCACAAGGTAAAGAC 59 11756167 11756186 AAGAGGGTAACCTTACTGGT 59 NA Drosophila melanogaster 50 CG10347 FBgn0030342 FBtr0073602,FBtr0073603 3 2 2 60 X 11747635 11747655 GTGTGGGAGATGATTTAAGTG 58 11747595 11747615 GTTAGTGACAATTCTAGGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr10b FBgn0030297 FBtr0073550 1 1 1 88 X 11306093 11306209 TACAGACAGTGGGAAATGTC 59 11306024 11306043 ATATCCATTCGAAACATGCC 58 NA Nonspecific Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073487,FBtr0073485,FBtr0073489 3 3 12 197 X 11284563 11289280 ATCTGGATTCGGTGAATGG 59 11289439 11289459 TGATATCGTTGATGCTCAGAC 59 NA Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073483,FBtr0073492,FBtr0073491 1 3 12 179 X 11276005 11281814 ATAGCTGATAATCAGCGCA 58 11281957 11282027 TATCTGTGAAGTCTGGGAC 57 NA Drosophila melanogaster 50 CG11105 FBgn0030281 FBtr0073465,FBtr0073466 1 2 2 196 X 11119231 11119249 AAATGGATACCAATCGCGA 59 11119005 11119023 CTTGTGGTTGGACTTACGT 59 NA DesignNoJunction Drosophila melanogaster 50 Vago FBgn0030262 FBtr0073427,FBtr0100644 2 2 2 60 X 10983570 10983589 CAATCAGCAGTACTGTATGG 58 10983609 10983630 GAAGACTTCACCGATATAAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 flw FBgn0000711 FBtr0071446,FBtr0071447 2 2 2 80 X 10300725 10300804 GGATTTACGGCTTCTACGA 59 10300847 10300866 GACAGTTGAAGCAATCTGTG 59 NA Drosophila melanogaster 50 CG9686 FBgn0030158 FBtr0071389 1 1 1 100 X 9773985 9774003 GAATAGCTTGCAAGGATCG 58 9774067 9774085 CAAGTCCGGGTATCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 t FBgn0086367 FBtr0071335 3 1 1 146 X 9112808 9112827 CATCAATTTCACCTTCCTGG 58 9112554 9112632 CGATCGAATTGATTGACATGG 59 NA DesignRelaxed Drosophila melanogaster 50 Nrg FBgn0002968 FBtr0071209,FBtr0071208,FBtr0071207 2 3 3 80 X 8426428 8426448 CGCAACAGAATAAGGAAAGTG 59 8426489 8438893 TCCAACTATATTCTGGCTCG 58 NA Drosophila melanogaster 50 Cp7Fc FBgn0014466 FBtr0071202 2 1 1 60 X 8372126 8372144 TCACCCTTCAATGACTACG 58 8372165 8372186 GCTTATAAAGAAGGTAGGTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trxr-1 FBgn0020653 FBtr0071168,FBtr0071167,FBtr0071169 2 3 3 104 X 8140380 8140398 AAAGATCAAGCCAGACTGG 59 8140466 8140554 TACTCCACTTTCTTGTCGC 59 NA Nonspecific Drosophila melanogaster 50 CG1531 FBgn0029985 FBtr0071098 1 1 1 82 X 7844752 7844770 TATTAGCGGATCCCATTGC 59 7844814 7844912 CATGCACGTAAAGTAATCCTG 59 NA Drosophila melanogaster 50 CG4607 FBgn0029932 FBtr0071014,FBtr0071013 3 2 2 61 X 6964929 6964949 GAAATCCCTCAGATACTTCCG 59 6965440 6965458 CGAATTCCGGTACGTAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Marf FBgn0029870 FBtr0070909,FBtr0070910 3 2 3 125 X 6263369 6263388 CTGGAGTTTAAGTTCAGCTG 58 6263476 6263563 TACGCTGTGTCCAATACTG 59 NA Drosophila melanogaster 50 Nep1 FBgn0029843 FBtr0070872,FBtr0070873 2 2 2 118 X 5996912 5997001 ACGATATAGTATTTCCTGCTGG 59 5997080 5997098 GAATCCGTGGGTAATCTCG 59 NA Drosophila melanogaster 50 cv FBgn0000394 FBtr0070804 1 1 1 81 X 5586271 5586289 ATATCTGGATCAGTGCGTG 59 5586334 5586419 GTGGAACCATCTCGTACTG 59 NA Drosophila melanogaster 50 CG15777 FBgn0029781 FBtr0070854 1 1 1 73 X 5550145 5550163 CAACATACAGGAGACTCCG 59 5550090 5550108 CAATATCCCTATCGCCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SK FBgn0029761 FBtr0070770 3 1 7 97 X 5277591 5277611 CTAATGACAATATGTCCGGGA 59 5277669 5288094 TCATGAAATCTTTCGCACTG 58 NA Drosophila melanogaster 50 CanB FBgn0010014 FBtr0070764 1 1 1 100 X 5226824 5226842 GAATTTAACAATCCAGCGC 57 5227131 5227418 GTTCTCTGGTCTAGATCCA 57 NA Nonspecific, InUTR Drosophila melanogaster 50 CG12680 FBgn0029740 FBtr0070726 1 1 1 60 X 4892091 4892112 CACTATACCTTTGGCTCTAGTC 59 4892132 4892151 GATTCGGCAACAAATATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ctp FBgn0011760 FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704 3 4 4 185 X 4585719 4585738 CAGTGAAGTTGTAAGCACAC 59 4592338 4592356 CTCCTTCTTGATGTAGGCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 yin FBgn0015565 FBtr0070632,FBtr0070633,FBtr0070631 2 3 3 173 X 3759040 3759114 GATGCCAACTAAAGCTGTG 59 3758885 3758903 AAAGATCCTGCGTTAATGG 57 NA DesignRelaxed Drosophila melanogaster 50 Crg-1 FBgn0021738 FBtr0070599 3 1 1 296 X 3689012 3689030 CTCTGATTTGTGCGTTCTC 58 3690721 3690739 CCGTTAACGTAGTCTGGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG10801 FBgn0029660 FBtr0070526 2 1 1 159 X 3355835 3355853 TGAATTACTCCTGGACGGA 59 3355976 3356094 ATCAAGGAGCAAATCTCCG 59 NA Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514 2 9 14 87 X 3215176 3215194 TCTATATCGCTCCGATTCG 58 3215244 3219972 CTGTTCTTTAAACCTTTCGC 57 NA Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 3 13 13 81 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567131 2567221 CTGTATTGAGAGCTCATGCT 59 NA Drosophila melanogaster 50 Unc-76 FBgn0040395 FBtr0070376,FBtr0070377 1 2 2 80 X 1985913 1986003 TCCTGATCAAGATTCTCAAGG 59 1986045 1986063 GCACCTTCAGGATGTAGTC 59 NA Drosophila melanogaster 50 CG4199 FBgn0025628 FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333 3 4 6 133 X 1965449 1965467 TAAACACAATGGGTTCCGT 59 1962398 1962416 CATGGTTGTACTGGGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11448 FBgn0024985 FBtr0070225 1 1 1 163 X 1289216 1289286 ATACGCAAATTCTTCCGGA 59 1289413 1289431 AACTCGGATGCTTTAAGGG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG3021 FBgn0040337 FBtr0070173 2 1 1 60 X 921560 921579 TCAAGGACTTCATACAGGAG 58 921690 921708 CTGTCGATGTCTAGGAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dredd FBgn0020381 FBtr0114561,FBtr0114560,FBtr0114559 1 3 3 80 X 528200 528221 GAAGTTGCTAATCATACAAGCC 59 528073 528161 GTCACGTCTATCCTAAAGAGC 59 NA InUTR Drosophila melanogaster 50 CG4293 FBgn0024983 FBtr0100476 2 1 4 177 X 423558 423677 GGTAAGCTGAAACATGACG 58 423341 423359 CGTGTAAACCAGGTAAACG 58 NA InUTR Drosophila melanogaster 50 ase FBgn0000137 FBtr0070075 2 1 1 60 X 355896 355917 GGTTGCAATACATCAGAATACC 59 355937 355956 AATAAGTCAGTCGTCAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32816 FBgn0052816 FBtr0070101,FBtr0070102 3 2 2 74 X 227605 227623 TCAGGAAGCTATCCATCAC 58 211913 211932 AAATCATTTGGCTCCATCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CR41604 FBgn0085814 FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269 2 4 4 105 U 3449415 3449487 TTTCTGAAGCAAAGTCCCA 59 3449556 3449574 GCTTGATACTGATCTCCCG 59 NA Drosophila melanogaster 50 CG41542 FBgn0085679 FBtr0114128 3 1 1 61 U 9484845 9484865 CAGACGACTACGATATAATGG 57 9484888 9484906 CTGACGTAAACGTACTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41555 FBgn0085686 FBtr0114135 1 1 1 81 U 4865765 4865820 AAGAAACCTATCCGACGAG 58 4865865 4865883 GTTTCCTTAACAGCTGCTG 59 NA Drosophila melanogaster 50 CG41560 FBgn0085691 FBtr0114140 2 1 1 95 U 4060520 4060865 AGAAGAACGAATGGATCGG 59 4060443 4060461 TTAGTACCACTTGTCTGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CaMKII FBgn0004624 FBtr0089217,FBtr0089218,FBtr0100148,FBtr0089219,FBtr0100146,FBtr0100147 2 6 6 80 4 1068498 1068517 CAGGATATCTGTCTCCTGAG 58 1068344 1068456 AAAGAATAACTCCACATGCC 58 NA Drosophila melanogaster 50 plexA FBgn0025741 FBtr0089226,FBtr0089223,FBtr0089225,FBtr0089224 1 4 5 117 4 1036234 1037009 AGATTTAGAGTGGAGAACAGG 58 1036137 1036155 CGGAACATTATAGTGCTGC 58 NA Drosophila melanogaster 50 Pur-alpha FBgn0022361 FBtr0089994,FBtr0089996 1 2 4 145 4 585281 586046 GATGGAGGGTTTAAAGGAG 57 586240 586258 ATAGTTATCGAAGTCCGGA 57 NA Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451 2 4 8 95 4 159114 159132 AAGCGGCTAAAGACTAGTG 59 159190 160904 AGTACCAGTCTTGTCAAAGC 59 NA Drosophila melanogaster 50 CG1638 FBgn0039855 FBtr0113315 3 1 1 87 3R 27416804 27416822 TCAACTTTAGAGGCTTCGC 59 27416931 27416951 ACTTTCAGGTGCCTATTACAG 59 NA DesignNoJunction Drosophila melanogaster 50 Ptx1 FBgn0020912 FBtr0089389 2 1 3 80 3R 26742428 26749144 CTCGAGAAACTCAGAATTTGG 58 26749186 26749204 CAAACTATTTGCTACGGCG 59 NA Drosophila melanogaster 50 Ptx1 FBgn0020912 FBtr0089390,FBtr0089389,FBtr0089391 3 3 3 261 3R 26750043 26750061 AGTGTAAACGAAACCACGA 59 26750286 26754872 GATTCTTGAACCACACCCT 59 NA DesignRelaxed Drosophila melanogaster 50 tll FBgn0003720 FBtr0085709 1 1 1 60 3R 26679671 26679689 CTGTTCTTCCGAAAGACCA 59 26679713 26679731 TGTACATGTCGGAGATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS7 FBgn0039757 FBtr0089423,FBtr0089425,FBtr0089422 2 3 4 90 3R 26032436 26033825 TTGAACACAAAGTCGACAC 58 26032364 26032382 ACATTCAGGTAGTTGTCGG 59 NA Nonspecific Drosophila melanogaster 50 CG31427 FBgn0051427 FBtr0113407,FBtr0113406 1 2 2 112 3R 25065062 25065137 GGCAAAGATGATTTCCTTCC 59 25064969 25064987 TTGCGAATACCTTCCTTGG 59 NA Drosophila melanogaster 50 CG14509 FBgn0039647 FBtr0113303,FBtr0113304 1 2 2 146 3R 25004530 25006888 AGAGTTCGATTATGCCAGTC 59 25004403 25004421 TCATAGTGATTGGTGACGG 59 NA Drosophila melanogaster 50 CG11897 FBgn0039644 FBtr0085387,FBtr0085386 1 2 2 80 3R 24989869 24989950 CAACGTTGATCCAGAAACC 59 24989992 24990012 GCTATAGTCAATACAGTGCAG 58 NA Drosophila melanogaster 50 Pglym78 FBgn0014869 FBtr0100482,FBtr0100483,FBtr0085384 2 3 3 212 3R 24975027 24975045 TACGAGAACATCGTCAAGG 59 24975218 24975301 CTCAGAAAGGTTGTCTAAATGC 59 NA DesignRelaxed Drosophila melanogaster 50 yemalpha FBgn0005596 FBtr0085415 2 1 1 125 3R 24947498 24947516 AGTATGGCAACTCCTATGC 59 24947323 24947410 GTATGATTTCGTCGTAGGCT 59 NA Drosophila melanogaster 50 CG4951 FBgn0039563 FBtr0085265,FBtr0113298 2 2 2 90 3R 23778926 23778944 AGGATAAGGCTTCTTCCAG 58 23778796 23778872 GATCTGGAATTCTGCTGTG 58 NA Drosophila melanogaster 50 CG12426 FBgn0039552 FBtr0085227 3 1 1 60 3R 23697849 23697867 TGGATGTACACGTTCATCC 59 23697807 23697825 GGAATATGACGAGAACCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mtl FBgn0039532 FBtr0085191,FBtr0085192,FBtr0085193 3 3 3 140 3R 23464015 23464106 ATCATTCTAGTTGGCACCA 58 23464210 23464228 CTCCATGTATTTCACAGCG 58 NA Nonspecific Drosophila melanogaster 50 CG5938 FBgn0046247 FBtr0113355,FBtr0085159,FBtr0085160 3 3 5 129 3R 23101495 23102020 GCAACATGACGGTATTTGG 59 23102113 23102131 AGGGATTTCTTCAGCACTC 59 NA InUTR Drosophila melanogaster 50 CG14258 FBgn0039482 FBtr0085103 3 1 1 62 3R 22919274 22919292 TGCTGGTCAAGCATTAGTC 59 22919371 22919390 AAAGTCCTGGCTACATAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5455 FBgn0039430 FBtr0085016,FBtr0085017,FBtr0085015 1 3 3 82 3R 22293798 22293874 CGATGATAGCGACTATGCT 59 22293920 22293938 AAGTGGGAAAGCTGTACTC 59 NA Drosophila melanogaster 50 CG17370 FBgn0039381 FBtr0084909,FBtr0084910,FBtr0084911 2 3 3 88 3R 21711544 21711628 GGAACCAACGGATAAATTCG 59 21711678 21711697 AGAACATGATGAGCAGTGAG 59 NA Drosophila melanogaster 50 XNP FBgn0039338 FBtr0084838,FBtr0084837 2 2 2 70 3R 21305130 21305148 CCAAGAACTACGAGTTCGA 59 21305022 21305040 GAAGTAATCCTTTCCGCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG31439 FBgn0051439 FBtr0084845 3 1 1 60 3R 21223729 21223749 GATTACTACATCTGTCGTCAC 57 21223689 21223708 TGAAGTACCTATCACCACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CHKov1 FBgn0045761 FBtr0113351,FBtr0113352,FBtr0113349 3 3 5 291 3R 21149361 21149379 ATAACCTAGTGGAGCACCT 59 21149028 21149047 TAATTAAAGTCCAGGGCACC 59 NA DesignNoJunction Drosophila melanogaster 50 Ast FBgn0015591 FBtr0084744 2 1 1 133 3R 20587146 20587164 CGAGATCGACTACAGAGTG 58 20586970 20586988 CAGCATTGACTTAACGTCG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 ash2 FBgn0000139 FBtr0114545,FBtr0084660 3 2 3 82 3R 20476243 20476261 CCAACTATGTGTTCGTCTG 58 20476307 20476385 CATCTGGGATATGGTAGCC 58 NA Drosophila melanogaster 50 CG13624 FBgn0039209 FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795 3 6 6 127 3R 20386540 20386625 TTAAGGTGTACAAGCACAG 57 20386431 20386449 AGTCATGTCATTGATGGTG 57 NA Drosophila melanogaster 50 CG6454 FBgn0039187 FBtr0084608 1 1 2 111 3R 20175949 20177784 GATCGAAGAATCCAGCTCC 59 20177859 20177877 TAAATTGGGACTGCTACCC 58 NA Drosophila melanogaster 50 Spase22-23 FBgn0039172 FBtr0084564 3 1 1 60 3R 20055348 20055367 CTGTGGGACAAGATTATCCT 58 20055307 20055326 TGTTCATGTTCTTGAAGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-glupro FBgn0005674 FBtr0084512,FBtr0084511 3 2 2 62 3R 19779173 19779192 CCTCAATCAGTGGAATAACG 58 19779063 19779082 GTACGTAGGAAAGGAGTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10365 FBgn0039109 FBtr0084447,FBtr0084448,FBtr0084446,FBtr0084449 3 4 4 108 3R 19554819 19554837 ATTCGAGGATATGTTCGCC 59 19555685 19556380 AAGTGATTCCCTCTTTGTCC 59 NA Drosophila melanogaster 50 CG31145 FBgn0051145 FBtr0084480,FBtr0084479 1 2 2 83 3R 19434146 19434165 GTACGACCTTATGGACATGG 59 19433379 19434101 CCGTAGACCTTGAATGTCTC 59 NA Drosophila melanogaster 50 orb FBgn0004882 FBtr0084385,FBtr0084384,FBtr0100227 2 3 5 161 3R 19094013 19094120 TTCACCTTTAGTCAGCGAC 59 19093870 19093888 AAACTAAGTCCCAATCCGC 59 NA Drosophila melanogaster 50 CG33093 FBgn0053093 FBtr0084287 2 1 1 98 3R 18356726 18356801 CACGCTTTGCAACATAGAG 59 18356646 18356665 TGCAGAGTTATCAGGATGAC 59 NA Drosophila melanogaster 50 sar1 FBgn0038947 FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208 2 5 5 60 3R 18184317 18184335 TTCACTACATTCGACTTGG 57 18185255 18185273 GGAAGTAGTCCTTCCAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31163 FBgn0051163 FBtr0084197,FBtr0110836 3 2 2 92 3R 18107604 18107622 ATTTCAACGTGAACACGAG 58 18110651 18111206 ATATACGTATCGTCCATGCG 59 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 3 22 22 87 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202451 17202547 TTGTTCAGGAATACGATAGC 57 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084063 1 1 22 112 3R 17179445 17200789 GGCTCAAGAATTCGATTACG 59 17179352 17179370 AGAACTTCATCCCATCGAG 58 NA Drosophila melanogaster 50 att-ORFA FBgn0067783 FBtr0089481,FBtr0089482,FBtr0089480 2 3 3 60 3R 16378772 16378861 TCAAGATCTATCGTGAGGAG 58 16378731 16378749 CAGTTCATGCTAAGTCCCT 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Cha FBgn0000303 FBtr0089368 2 1 2 272 3R 14555603 14555624 CGGAAAGACCTTTATCAAATCG 59 14555950 14556055 AGATGATCCTTCTTTCGCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG18600 FBgn0038601 FBtr0083594 2 1 1 90 3R 14126693 14126711 AAAGTTTGATCCCGAGCTC 59 14126564 14126642 GATTTAATGGGTAGAGTCTGCA 59 NA Drosophila melanogaster 50 CG18599 FBgn0038592 FBtr0083571 1 1 1 160 3R 14096187 14096322 ACTCAAGTCGGATTCTCAC 59 14096446 14096464 CCGTTAACTTTAGGGTGTG 58 NA Drosophila melanogaster 50 CG14313 FBgn0038579 FBtr0083615 3 1 1 84 3R 14017128 14017146 ACACCTTTAGCATCATGCA 59 14017062 14017080 TAGCTGACGTTGTTCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17802 FBgn0038549 FBtr0083526 3 1 1 118 3R 13629369 13629586 TAACTTCCACTGTGAGGTC 58 13629269 13629288 CAATTTCGGACTTAGCACTC 58 NA Drosophila melanogaster 50 CG14330 FBgn0038512 FBtr0083443 1 1 1 211 3R 13282270 13282288 CTCTTCTACGAGATACCGC 59 13282077 13282095 ACTTTGCGGATAGAATAGC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG5863 FBgn0038507 FBtr0083439 1 1 1 60 3R 13237875 13237893 ATCGTGTTCATCATTGGAG 57 13237914 13237935 CACTCATTACATAATCTCTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17475 FBgn0038481 FBtr0083417 2 1 1 60 3R 12955938 12955957 TAATCAATGGCGAAGATGTG 58 12955897 12955916 ATTCCCTGCAACGATATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fas1 FBgn0000634 FBtr0112803 1 1 4 138 3R 12455313 12457342 CAGTTAGGTTCTACAGCCTG 59 12457443 12457461 ATGTGATAGAGCACATGGG 59 NA Drosophila melanogaster 50 CG14903 FBgn0038446 FBtr0083303 1 1 1 60 3R 12399042 12399060 CAAGTTGTGGATCGAACAG 58 12399000 12399018 AACATAAGGTTTCAAGGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8927 FBgn0038405 FBtr0100110,FBtr0083254 3 2 2 149 3R 12010827 12010845 AATACCATACTTCCAGCGG 59 12010958 12010976 CTGGAACTGTGATTGTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4525 FBgn0038358 FBtr0083170 3 1 1 81 3R 11602483 11602563 AATTGGGATCGAAAGAGCA 59 11602607 11602626 ATAGTGTCACACTCTGTTGC 59 NA Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 1 7 12 158 3R 11122418 11125004 GAAATACGATGAGGTTGCC 58 11126525 11126543 TTCTCCTCAGAGACTTCCA 59 NA Drosophila melanogaster 50 Orc2 FBgn0015270 FBtr0082866 2 1 1 95 3R 9791245 9791263 CAAGAAGTCCATGGATCAG 57 9791390 9791408 AAATCCTCATCTGAGTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 3 8 8 284 3R 9504401 9504476 ACACGACGTAAATCAGGAG 59 9504723 9504742 TTTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CheA87a FBgn0038142 FBtr0082749 3 1 1 60 3R 9195706 9195724 ATAGCGATGGAGACTACGA 59 9195747 9195766 TTCATAAAGTCGCAAAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8790 FBgn0027610 FBtr0082747,FBtr0082748 1 2 2 158 3R 9193736 9193754 AGAAGTACGTCAATACGGA 57 9193875 9193984 CATTATTGTAGTTGCGTCGT 58 NA Drosophila melanogaster 50 CG8449 FBgn0038129 FBtr0082778 3 1 1 106 3R 9096141 9096223 CGTGATAAACTGCTTCTTAGTG 59 9096056 9096074 AGCATGAATAGGGCATGTC 59 NA Drosophila melanogaster 50 CG34402 FBgn0085431 FBtr0112656,FBtr0112654 1 2 3 81 3R 8228195 8228269 CATTGGAAGTTGTGACCAC 58 8228314 8228332 TCTGCTGAACTTTCGATCC 59 NA Drosophila melanogaster 50 CG17639 FBgn0038029 FBtr0114565,FBtr0082576 2 2 2 100 3R 8210529 8210937 CTCACGGACTACTATTTCCC 59 8211000 8211018 AAGATTGTGTTTAGCCAGC 58 NA Drosophila melanogaster 50 MBD-R2 FBgn0038016 FBtr0082612 2 1 2 80 3R 8180558 8180650 TTGGATATAGCATCCCTTGG 58 8180497 8180516 AATAGGCTGGTCATTTACCC 59 NA Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 1 15 15 89 3R 7811197 7811279 CCCAAGAATAACATGCTTAAGC 59 7811129 7811148 CAGCTGTGTAAGATTAGCCT 59 NA Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 3 15 15 123 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811939 7812029 GGTTCTTCAGGATGTTGGA 59 NA Drosophila melanogaster 50 CG14714 FBgn0037929 FBtr0082422,FBtr0113222 3 2 3 108 3R 7498790 7498808 CAGCCACGAGATTAATGGA 59 7498982 7499001 TATAATGGTACCGGTTCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6782 FBgn0037912 FBtr0100465,FBtr0100462,FBtr0100461,FBtr0100464 3 4 4 236 3R 7386647 7386665 GTTAAGAAGACGGTGGGAG 59 7386370 7386388 CTTCACCTTGATGGTCTCC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG17230 FBgn0046225 FBtr0082392,FBtr0082393 2 2 2 66 3R 7291079 7291097 TTCAGTTTCCGAGACTTCC 59 7291127 7291145 CAGATTGGAGAACGAATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ugt86Dc FBgn0040257 FBtr0082337 2 1 1 60 3R 6981635 6981656 AGTTATTTGGAAGTACGAGGAG 59 6981674 6981695 CGATATGAGAACATTATCCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cap-H2 FBgn0037831 FBtr0082273,FBtr0082270,FBtr0082272 2 3 4 87 3R 6589604 6589625 CTAGATGAACTGTTGCTAATCG 58 6589671 6589889 GGCGTTGATCTTCTAAATCTG 59 NA Drosophila melanogaster 50 tws FBgn0004889 FBtr0082186,FBtr0082187 1 2 8 86 3R 5955360 5960550 AAGCCAGCAAGTAATGGAG 59 5955292 5955310 TATGATGTCTGCATCCGTG 59 NA Drosophila melanogaster 50 Fancl FBgn0037781 FBtr0082203 3 1 1 60 3R 5878103 5878122 CCTTGTACAAGTCAAACGAG 58 5878062 5878080 AAACGAATCATGGAACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16817 FBgn0037728 FBtr0082082 3 1 1 64 3R 5504316 5504335 GCAATGACTTGATCTACGTC 58 5504362 5504451 TTCCGTAACTTTGTGTTCG 58 NA DesignRelaxed Drosophila melanogaster 50 mura FBgn0037705 FBtr0082116,FBtr0082117,FBtr0082118 2 3 3 83 3R 5367294 5367414 GGAACTTGAATAACCACTTTGG 59 5367232 5367250 AGTTGTACGAAGAACCCTC 58 NA Drosophila melanogaster 50 CG8132 FBgn0037687 FBtr0082029 1 1 1 63 3R 5227514 5227532 GTACTTTCGGGAGTACTCC 58 5227559 5227577 CAAATTGGAGAGCTGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16736 FBgn0037668 FBtr0081985 3 1 1 60 3R 5082731 5082752 CATACAGTGATATCATGGTTCC 58 5082692 5082712 TAGTTATGAGATCGCTAAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pyd FBgn0003177 FBtr0112822 3 1 8 141 3R 4659875 4659893 ACTACCATGACATGAATGC 57 4659452 4659706 TGATAGCGTCTGTATTTGC 57 NA Drosophila melanogaster 50 CG31259 FBgn0051259 FBtr0081871 2 1 1 207 3R 4351094 4351112 AGGACTAAAGCCATTCCTG 58 4351356 4351374 ATTGTCGAAACCAAACGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Gfr FBgn0037567 FBtr0081863 3 1 1 92 3R 4128724 4128795 GAAATCAAGGTCACATCCG 58 4128650 4128669 GTCATGGTAGTACTGAGTGG 59 NA Drosophila melanogaster 50 CG9636 FBgn0037556 FBtr0081805,FBtr0081804 3 2 3 105 3R 4068193 4068212 GGGACAATAAGATCGTATCG 57 4068005 4068126 CTACTGCTAGGTTGAATCTG 57 NA Drosophila melanogaster 50 CG2678 FBgn0014931 FBtr0081757 2 1 1 186 3R 3740984 3741640 CTATGCTAAAGCCGAAACC 58 3741790 3741808 AACAGATCTCCCATGTGAC 58 NA Drosophila melanogaster 50 alphaTub84D FBgn0003885 FBtr0081539,FBtr0081538 3 2 2 61 3R 3357678 3357697 AAATAGTGTCCTCGATCACC 59 3357721 3357739 GGTGAGGTCCACATTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alphaTub84D FBgn0003885 FBtr0081539,FBtr0081538 1 2 2 60 3R 3357679 3357697 AATAGTGTCCTCGATCACC 58 3357721 3357739 GGTGAGGTCCACATTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34023 FBgn0054023 FBtr0100078 1 1 1 62 3R 3246248 3246266 CTATTCCCGAGTGGTATGC 59 3246292 3246310 TAATGCCATTTGAGGTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14607 FBgn0037488 FBtr0081575 2 1 1 60 3R 3068832 3068850 TACAACGATTCCGATGGAG 59 3068873 3068892 TAGGATAATCCACTCCAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bcd FBgn0000166 FBtr0081666,FBtr0081664,FBtr0081667,FBtr0081668,FBtr0081665 1 5 5 75 3R 2582455 2582473 GGATACGATAATGCAAGCG 58 2582398 2582416 CTAATTGAAGCAGTAGGCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15180 FBgn0037458 FBtr0081702 1 1 1 215 3R 2433920 2434065 TTATATGAGGATGCTGGCC 58 2433723 2433741 AAAGCAACCTTGACAATGC 59 NA DesignRelaxed Drosophila melanogaster 50 gpp FBgn0014963 FBtr0081723,FBtr0081724 2 2 2 104 3R 2264478 2264564 ACAGACAGAAACCTCAGTG 59 2264631 2264650 CAGATAATACGAAACGGGCT 59 NA Drosophila melanogaster 50 gpp FBgn0014963 FBtr0081723,FBtr0081724 3 2 2 104 3R 2264478 2264564 ACAGACAGAAACCTCAGTG 59 2264632 2264650 CAGATAATACGAAACGGGC 58 NA Drosophila melanogaster 50 Hr83 FBgn0037436 FBtr0081713 1 1 1 64 3R 2175560 2175579 TTATGGAGTCCCTAATCCTG 57 2176039 2176057 CAGGATAACGGCATACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31560 FBgn0051560 FBtr0078609 1 1 1 60 3R 2135951 2135969 CGGAACAGGATATGGAGAC 59 2135992 2136011 CTGGCTAGTGAAATAGTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078675,FBtr0078672 2 2 5 165 3R 1586675 1587378 AATTCGGACATCAAATCGTG 58 1586473 1586491 ATGACATCTACCTTGCAGC 59 NA Drosophila melanogaster 50 CG31548 FBgn0051548 FBtr0078736 2 1 1 81 3R 1462155 1462174 CTACCACCTTACTATGCTGG 59 1462093 1462111 AATCCCATTGACACTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1427 FBgn0037347 FBtr0078702 2 1 2 80 3R 1428643 1428718 GAGTTTCTAGGCAAATTTCGG 59 1428760 1428778 GTTATTCCAATTCCTGCCG 58 NA Drosophila melanogaster 50 exba FBgn0037346 FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745 3 7 7 85 3R 1423978 1423999 GGTTCTATTATTCGTAAAGGGC 58 1423648 1423932 CAGAACCGTTGACTAACCA 59 NA Drosophila melanogaster 50 exba FBgn0037346 FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745 2 7 7 84 3R 1423978 1423999 GGTTCTATTATTCGTAAAGGGC 58 1423649 1423933 AGAACCGTTGACTAACCAG 59 NA Drosophila melanogaster 50 CRMP FBgn0023023 FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686 1 4 4 80 3R 1404085 1404170 CATAAGTGAGGAGCTCGAC 59 1404214 1404232 AATCCAGAAGACTTTCCGC 59 NA Drosophila melanogaster 50 Snr1 FBgn0011715 FBtr0078682 2 1 1 93 3R 1296895 1296913 CTGTACAAGAAGTACCCGG 59 1296970 1296988 CTAAGATGTGGGAGCTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1116 FBgn0037297 FBtr0078775,FBtr0078774,FBtr0078776 2 3 3 210 3R 1045991 1046009 CAAGATCACCATTGCTACG 58 1046182 1046266 GGTTACGTTCTTAAGGTGGT 59 NA DesignRelaxed Drosophila melanogaster 50 cno FBgn0000340 FBtr0078832,FBtr0078833 3 2 2 88 3R 1007198 1007281 CATCAGTTTAATGCTCGCAG 59 1007129 1007147 TTGCTGTTCTTGTGTAGCT 59 NA Drosophila melanogaster 50 tacc FBgn0026620 FBtr0089955,FBtr0089953,FBtr0089952,FBtr0089954 3 4 7 83 3R 570242 570260 CAAAGTTTGGAGGTCTTCC 58 569896 570197 TCAGTTGAGTATCCATATCGG 58 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0100500 1 1 15 196 3R 117972 117990 TTACCGAACTTCTGTTCCA 58 121000 121299 TGATGTTGTACTTATCGCG 57 NA Nonspecific, InUTR Drosophila melanogaster 50 CG33169 FBgn0053169 FBtr0078550 1 1 2 98 3L 22858013 22858092 GCTCAAGTTTCTGATACGAG 58 22858153 22858171 AACACATTTCACCACTGTG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 Csp FBgn0004179 FBtr0078495,FBtr0078493 2 2 3 186 3L 22263010 22264665 CACATCTGAATGAGGACGT 59 22264815 22264833 TTTAGCGACGTATTCTCGT 58 NA Drosophila melanogaster 50 CG32440 FBgn0052440 FBtr0078345 1 1 1 63 3L 21354075 21354093 ATATACCGGACAAGTCCTG 58 21354120 21354138 TATTTCGAGGAACTGTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10587 FBgn0037039 FBtr0078333 3 1 1 60 3L 20955220 20955241 CATATTACGGCTAAAGAAACCC 59 20955181 20955200 TTTGCACAATATCAGCTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0100238,FBtr0100237,FBtr0078257 1 3 10 187 3L 20809758 20809776 ACATGTCCTACATGATGGC 59 20809927 20825957 TTTGACTTGTTCCCTCTCG 59 NA InUTR Drosophila melanogaster 50 CG32425 FBgn0052425 FBtr0078205,FBtr0078202,FBtr0078203 1 3 5 164 3L 20505333 20505351 ATCATCAATGATGAGCGCT 59 20505479 20505632 GATCACTGGTAGCTTTCCC 59 NA Drosophila melanogaster 50 in FBgn0001259 FBtr0078183 1 1 1 60 3L 20361522 20361541 GCTAATCGGATACATACGCT 59 20361563 20361582 CTCCTGATTAAAGCTCTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7668 FBgn0036929 FBtr0074904,FBtr0074905 2 2 2 89 3L 19997456 19997528 ATGAACTGTAACTTGAACGG 58 19997580 19997598 ACCAACATTCCAATTACCC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG32206 FBgn0052206 FBtr0089795,FBtr0089796 1 2 2 80 3L 19357771 19357789 TCCGACTCATTTGACTTCG 59 19348668 19357728 TAGCACATCATCTGGATTCG 59 NA Drosophila melanogaster 50 Max FBgn0017578 FBtr0075018 2 1 1 60 3L 19256111 19256195 TAGCTAAGCAGATACAAGCA 58 19256070 19256089 CTGAGAAATTCGCTGAACTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Indy FBgn0036816 FBtr0075083,FBtr0075082,FBtr0075081 3 3 3 89 3L 18824243 18824265 CTGTGGAGTACTGTAATCTACAC 59 18824112 18824195 TGAGGCCAAAGTGTAATCTG 59 NA Drosophila melanogaster 50 CG11905 FBgn0036678 FBtr0075304,FBtr0075301,FBtr0113173 3 3 10 209 3L 16926458 16928310 AAATGCGCTTTCTTGTTCTC 59 16923957 16923975 GTTGATAGGCTCCATAGGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Lmpt FBgn0036672 FBtr0089452,FBtr0089457,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459 1 6 8 120 3L 16905417 16906329 CATCGACTCCAAGGATCTG 59 16906412 16906431 GTAGATCTTATCCGCCTTGG 59 NA Drosophila melanogaster 50 CG13024 FBgn0036665 FBtr0075340 2 1 1 96 3L 16803226 16803245 GATAGTCAGCATGAGTACCA 58 16803090 16803108 TAAATCCTAGCTCTTGGGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG9706 FBgn0036662 FBtr0075327,FBtr0075326 1 2 2 60 3L 16777547 16777566 TGCCTGCTTATTACTACGTC 59 16777586 16777607 TACAGGAATACTTGGTAGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nxf2 FBgn0036640 FBtr0089479,FBtr0089478 1 2 2 109 3L 16571919 16571937 ATGTGGAGATCGATTTGGA 58 16571769 16571846 ATCGGGTATCATAAAGGCA 58 NA Drosophila melanogaster 50 CG32158 FBgn0052158 FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404 3 5 7 126 3L 16485860 16485879 ATTTGACTGGGATGTGAGTG 59 16485591 16485772 AATGATTGTCGTATCCCTCC 59 NA Drosophila melanogaster 50 Pdh FBgn0011693 FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536 3 4 4 131 3L 16346821 16346839 ATCATTCCCGTTTACGGAG 59 16346644 16346662 CATGTCCGTCATTGTAGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG12713 FBgn0036536 FBtr0075506 2 1 1 115 3L 15826403 15826421 CAAGTCGAACATCCAACAG 58 15826565 15826583 CAATGTTGTTATCCGGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34452 FBgn0085481 FBtr0112758 1 1 1 80 3L 15680219 15680238 GCTAAAGACGTATAGTCCCA 58 15680041 15680177 TCTAGCATAAAGACCAGACC 58 NA Drosophila melanogaster 50 CG13457 FBgn0036482 FBtr0075654,FBtr0075653 2 2 2 77 3L 15121464 15121482 ATTATACGGGACCTAGCTC 57 15121300 15121318 CATCATCGTAGGTGGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6945 FBgn0036476 FBtr0075657 1 1 1 169 3L 15087348 15087366 CAACAAAGGTCTTCGTTCG 59 15086274 15086292 GATTGTGCATAGAGTTGCT 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG18649 FBgn0036469 FBtr0075663 1 1 1 60 3L 15047046 15047065 GATGAGAAAGACGATGAGGA 58 15047005 15047023 CAGGCTCATCTAAGTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13461 FBgn0036468 FBtr0075664 2 1 1 60 3L 15045319 15045339 GTCAGATAATGAATCAAGCGG 59 15045279 15045298 GGTATTATCATCAGACCCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 endos FBgn0061515 FBtr0075783,FBtr0075782 2 2 2 229 3L 14023965 14023984 CTCAAGTCCAAGTATCCCAG 59 14023369 14023387 TTACAGGGTTGGATGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9007 FBgn0036398 FBtr0075768 1 1 1 60 3L 14003675 14003802 TTTGGTCAGCAAATTGCTC 59 14003825 14003844 TACTGCTTATAGCAGAGTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG17300 FBgn0036345 FBtr0075892 3 1 1 74 3L 13079853 13079871 TGTAAAGTGGGCTGATAGC 59 13079671 13079690 ACCTTGATCTTAGTTTCACG 57 NA DesignNoJunction Drosophila melanogaster 50 CG11006 FBgn0027534 FBtr0075927,FBtr0075929,FBtr0114506,FBtr0075928 1 4 4 84 3L 12803756 12803840 TGATGAAGATCGATGAGAAGG 59 12803886 12803904 AATGATAGAACGCCTGTGG 59 NA Drosophila melanogaster 50 CG10984 FBgn0036305 FBtr0075921 1 1 3 91 3L 12743948 12744418 TTTACATCATTCATCCCGCA 59 12744472 12744490 CTTGCTTCTCATTCAGGCT 59 NA Drosophila melanogaster 50 CG10638 FBgn0036290 FBtr0089321 2 1 2 96 3L 12492358 12492432 TTGGTCACTAAGCTTTGGA 58 12492280 12492299 GATCGATATAGTCCAAGCCA 58 NA Drosophila melanogaster 50 mtTFB1 FBgn0036197 FBtr0076112,FBtr0114551,FBtr0114552 3 3 3 61 3L 11703301 11703319 CCTAAGACTCAATTGCCGT 59 11703344 11703362 CGCATGCTAAAGATGTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14135 FBgn0036193 FBtr0076111 1 1 1 180 3L 11685611 11685629 GATCAGAGGAAGAACTCGC 59 11686325 11686346 CTCGTTCTTTGATTCTTCAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6707 FBgn0036058 FBtr0076356,FBtr0076358,FBtr0076357 2 3 3 83 3L 9889096 9889114 CTGGTGTTCCTCATCACAG 59 9888950 9888968 GTAGAGGAAGTACATGCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG8108 FBgn0027567 FBtr0076339,FBtr0076340 1 2 2 102 3L 9858406 9858424 CACTACGACAACAGGAGTC 59 9858490 9859423 GAGATGAGTCATAGCTGCG 59 NA Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385 2 8 8 112 3L 9825956 9826035 GAGTTAACCGGGACTACAC 59 9826111 9826129 TCTTTCCCAAACTTAGCCG 59 NA InUTR Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323 1 4 11 113 3L 9774996 9775719 ACCTGGGTAATTTGTCTGG 59 9775795 9775814 ACATATCGTCCTTCATGTCG 59 NA Drosophila melanogaster 50 CG18178 FBgn0036035 FBtr0076412 3 1 1 60 3L 9711604 9711623 TTAAGGATATCAAGGCTTCG 57 9711563 9711581 AGTGATACGAATAAGCCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16711 FBgn0036032 FBtr0076397,FBtr0076396 1 2 2 60 3L 9701922 9701940 TCCAGAACAATCAGATGGC 59 9701963 9701982 AGATATGAATTCAGCAGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3911 FBgn0035992 FBtr0089879 1 1 1 220 3L 9432383 9432401 AGTTCTCCCTGGTATTCGA 59 9432083 9432101 TATGACCTCCTCTAGACGC 59 NA DesignNoJunction Drosophila melanogaster 50 Hsp67Bb FBgn0001228 FBtr0100653,FBtr0100655 3 2 2 88 3L 9366346 9366364 CAATCATATTCACCTGCCG 58 9366416 9366502 GTAGATCACCACATTGCTG 58 NA Nonspecific Drosophila melanogaster 50 CG4477 FBgn0035971 FBtr0076430 1 1 1 99 3L 9243956 9244044 TATGTATAAAGGCGGTCCG 58 9244107 9244125 AACGGATGGAACTCTTAGC 59 NA Drosophila melanogaster 50 Gug FBgn0010825 FBtr0076619,FBtr0076617,FBtr0076618 2 3 4 267 3L 8461489 8461507 ATTTGATCTTCAAGCCGGT 59 8461798 8461978 TGTTCAACAGGACTGAAGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Idh FBgn0001248 FBtr0076671,FBtr0114548,FBtr0114547,FBtr0076668,FBtr0076673,FBtr0076669,FBtr0114549,FBtr0076667,FBtr0076670 2 9 9 60 3L 8350910 8350931 CATTAAGAGCCAACTGATTCTG 59 8350871 8350889 ACCAAGATCGTAGGTATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr66Cb FBgn0035875 FBtr0076601 2 1 1 118 3L 8330819 8330837 ATCAAATCGAACGCATCTC 58 8330919 8331020 GGGAGGAGCATAGTAATCC 58 NA Drosophila melanogaster 50 mRpL36 FBgn0042112 FBtr0076735 2 1 1 82 3L 8117980 8117998 AACTGGAATCTGTCAGACG 59 8117916 8117934 GTCCCTTGACCTTGAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780 3 8 8 128 3L 7811268 7811288 CCAGATGACAAATACAAGGAG 58 7810754 7811178 GTCGGCATATTGTGTTACC 58 NA Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112702,FBtr0112698 2 6 10 80 3L 7693414 7693497 ACTGTACAAGGAAGTCATCC 59 7693353 7693373 TTAGCTTCGAATGGTTCTACC 59 NA Drosophila melanogaster 50 CG7716 FBgn0035800 FBtr0076824 3 1 1 60 3L 7582204 7582222 TTTGACCTTAACGGTGGAC 59 7582162 7582183 GCTCTCCAATTTGTTTAGTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32376 FBgn0052376 FBtr0076827 1 1 1 60 3L 7535527 7535545 TTCGGATCAGAAAGTGAGG 58 7535485 7535505 TGTCCTTATAGTATCCTGACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7548 FBgn0035792 FBtr0076830 1 1 1 60 3L 7498806 7498824 TCTGTTTACCAACAGAACG 57 7498764 7498782 CCGGAGAATAGTGGATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8596 FBgn0035767 FBtr0076881 3 1 1 83 3L 7336701 7336776 CTCAACAAGCTAGATCCCG 59 7336636 7336655 ACTGAAGATCATTTGTCCCA 58 NA Drosophila melanogaster 50 Prat2 FBgn0041194 FBtr0076945 1 1 2 90 3L 6906617 6907521 CAACACAACTGGACATAGC 58 6906545 6906563 AAACTGGTCACTATTCCCG 59 NA Drosophila melanogaster 50 D19A FBgn0022935 FBtr0077016 2 1 1 60 3L 6179882 6179900 TTCGAGTGCAAGATTTGTG 58 6179840 6179858 TGATGTGTTTCTTGAGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13708 FBgn0035577 FBtr0073358 3 1 1 60 3L 4829163 4829183 GTATGCTTCTTGATATCGTCC 58 4829123 4829141 AGGTAGACATCTAGCTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hexo1 FBgn0041630 FBtr0073235,FBtr0073237,FBtr0073236 3 3 4 98 3L 4289086 4289104 GTTGACGAAATGAAGTCGA 58 4289166 4289258 GTAAACCAAGTCATCCGAG 57 NA InUTR Drosophila melanogaster 50 CG10359 FBgn0035452 FBtr0073136 2 1 2 155 3L 3613875 3614080 GCTTAAAGATATCTCGCGC 58 3614199 3614217 ACAGATCTGACACTGAGAG 57 NA Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133 2 5 11 192 3L 3578467 3593333 TTGCAGATATGGAGACTGG 58 3593487 3593507 CTGTTTGTTCAGAAAGACCTC 59 NA Drosophila melanogaster 50 PHGPx FBgn0035438 FBtr0073068,FBtr0073066,FBtr0073067 3 3 4 214 3L 3328064 3328082 CTGGTGATCCTCAACTTCC 59 3328326 3328345 GTGAAGTTCCACTTGATTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32284 FBgn0052284 FBtr0073037 2 1 1 84 3L 3186886 3186968 CCAACTTGTAGAACCTACGT 59 3187015 3187033 AGTACTGGTTCACTTTGCA 59 NA Drosophila melanogaster 50 stet FBgn0020248 FBtr0072713,FBtr0072712 1 2 2 201 3L 1476517 1476594 ATTCTGGTCTTCGTTTCCT 58 1476334 1476352 TCTGCTCAAAGCTCTTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 FucTD FBgn0035217 FBtr0072693 3 1 1 60 3L 1417519 1417537 CATGGCTATGGACAAACTC 58 1417560 1417579 CAGATTGGTTAGGTTTCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33446 FBgn0053446 FBtr0086438 1 1 1 62 2R 15619368 15619386 AATACATCGGTTCTCGTCC 59 15619324 15619342 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9380 FBgn0035094 FBtr0110899 3 1 2 103 2R 21074424 21074442 TTAGATCGTGAGATGCAGC 59 21072546 21074358 TCCATATTTCGCACATACGT 59 NA Drosophila melanogaster 50 Nplp1 FBgn0035092 FBtr0072443 2 1 2 107 2R 20925012 20925030 TCGACTGGAACGATTATCG 59 20926621 20926639 GAAACACTGCTTACAAACG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG30424 FBgn0050424 FBtr0113375,FBtr0113377,FBtr0113376 1 3 3 97 2R 20853307 20853382 ACTTCGGGAATTCAGTCAC 59 20853228 20853246 TTGAAGTGGTCTTCAGTCC 59 NA Drosophila melanogaster 50 CG2790 FBgn0027599 FBtr0072409 2 1 1 60 2R 20834300 20834319 CTTTGACTCCAAGAACAAGC 59 20834259 20834278 TATGTAGACACCATGGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS17 FBgn0034986 FBtr0072277 3 1 1 96 2R 20061863 20061881 CGAGGACTCCTACTAATGG 58 20061785 20061804 TATTCAGGTTCTTGTCCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SIP1 FBgn0061198 FBtr0072194 3 1 1 105 2R 19916147 19916165 GAGAATCACCGACTTTCTG 57 19915571 19915589 CTCCAGATAGTCTATGCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pde8 FBgn0034886 FBtr0072074,FBtr0072077,FBtr0072075,FBtr0072076 3 4 5 101 2R 19562501 19562640 TTAATAGATGCGTAGCGGA 58 19562705 19562723 GAGTGGACATGACATTGTG 58 NA Drosophila melanogaster 50 Gr59a FBgn0045483 FBtr0071964 1 1 1 60 2R 18968605 18968625 CACATTCTTCTACTTCACCTC 58 18968644 18968665 CTGGTTTACAAAGTCATATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 twi FBgn0003900 FBtr0100130,FBtr0071953 3 2 2 60 2R 18934043 18934061 TGGACATAAGCTACAAGCC 59 18934084 18934103 TTGATCACATTGTTCTGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30196 FBgn0050196 FBtr0071927 2 1 1 60 2R 18542537 18542555 GTCAATCACTACTGCAGCT 59 18542495 18542514 ACCAACTCAGAGTGATATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4329 FBgn0034745 FBtr0071940 3 1 2 61 2R 18499375 18499393 GGAAACCGATCATCATGAC 58 18499283 18499302 GGTCTCATAGTTCCAAATCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG3045 FBgn0034703 FBtr0071787 3 1 1 81 2R 18061065 18061143 CATACAAATTCAGGCTACGAC 59 18061004 18061023 CCATTATGCAACGGATTTGG 59 NA Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089710,FBtr0089703 2 2 9 130 2R 17399440 17399460 CCGTCTAGATCCTACAAACTC 59 17399676 17399909 GGAAGTACTTGACGTAGCC 59 NA Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708 2 9 9 93 2R 17398737 17398915 TTTGCCAGAGGATTACGTC 59 17398972 17398990 ACCAATCACCGACTTTAGG 59 NA Drosophila melanogaster 50 Pros29 FBgn0003150 FBtr0071522 3 1 1 259 2R 16882794 16882812 AAGATCTATCGCCTGAACG 59 16883172 16883190 GACTGGTACAGTTGGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13427 FBgn0034514 FBtr0086268 1 1 1 106 2R 16426563 16426581 CTGAGCAAATTGTTCCAGC 59 16426475 16426493 TTGTAGTACGGATAGGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0100392 1 6 15 104 2R 15361451 15361469 ACGTTATTCCTGCAGAGAC 59 15365203 15366258 CTCTGGTTTGACCAGAGTG 59 NA Drosophila melanogaster 50 Elongin-C FBgn0023211 FBtr0086540 2 1 2 200 2R 15333532 15333550 ACGAATTTGTCGTCAAACG 59 15332802 15332820 GGAATTCGGGTATTTCGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CalpA FBgn0012051 FBtr0086529,FBtr0086530,FBtr0112869 2 3 3 84 2R 15313711 15314143 GAATATGAGAGTTCTGGGAGAG 59 15314186 15314206 GCAGCTGTTCAATATTGTCTC 59 NA Drosophila melanogaster 50 hts FBgn0004873 FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086548 3 5 6 90 2R 15295689 15295707 TTCGATAACGTCACAGACG 59 15295549 15295636 CTGTGTCGGTATATTCACCA 59 NA Drosophila melanogaster 50 cer FBgn0034443 FBtr0086551 2 1 1 79 2R 15284038 15284056 CAAGAACTACGAGGCAGAG 59 15283977 15283995 GATTGTGTTCCTCAATCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10737 FBgn0034420 FBtr0086588,FBtr0086585,FBtr0086586 3 3 5 81 2R 15064177 15064195 GATTAGTCACAAGCAGTGC 58 15064239 15064455 AAATGACGTTAGTTCCATGG 58 NA Drosophila melanogaster 50 CG15118 FBgn0034418 FBtr0086590,FBtr0086592,FBtr0086589,FBtr0113096,FBtr0086591 1 5 5 60 2R 15023833 15023851 GCTCTTACATCTTCAAGGG 57 15023724 15023742 GTATCGTGATCGATCTCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG18190 FBgn0034403 FBtr0086626 3 1 1 60 2R 14739539 14739559 CGATAGATGGTGAAATCAACG 59 14739499 14739518 CCTTCATCACCATTATCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15096 FBgn0034394 FBtr0086633 3 1 2 166 2R 14697680 14698841 GCTTTGAGGATGAAGACTC 57 14697466 14697550 CGACCAATTATACTCGGGA 58 NA Drosophila melanogaster 50 CG15093 FBgn0034390 FBtr0086638 3 1 3 260 2R 14664055 14664073 ACTTTGTGATCACCATGCT 59 14663589 14663607 CACAGGGTTGTAGATCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33998 FBgn0053998 FBtr0100053 3 1 1 60 2R 14626070 14626089 GCCGTAGTCACAGTATTACC 59 14626109 14626130 TCCCTGTGTAAATGCATATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14505 FBgn0034327 FBtr0110803 1 1 1 60 2R 14191197 14191216 ATTGTGACACCGTCTATGAG 59 14191156 14191174 CCATACAGCGGACTTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10911 FBgn0034295 FBtr0086808 2 1 1 60 2R 13940445 13940464 AATCGTCTACTGATTCGTCC 59 13940404 13940423 GAATCAGTTGAGGAATCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GstS1 FBgn0010226 FBtr0087005,FBtr0100258,FBtr0087006 1 3 3 120 2R 12981866 12981884 ATTCTACCTGGAGAAGCTC 58 12981677 12981697 GACCATGTAGTTCATGTAGTC 57 NA DesignNoJunction Drosophila melanogaster 50 Sply FBgn0010591 FBtr0087008,FBtr0087007 3 2 2 194 2R 12976444 12976522 AGTTTCCATCTGGTATCCAC 59 12976269 12976287 GAGTCACTTCTCCGATCAC 59 NA Drosophila melanogaster 50 CG30463 FBgn0050463 FBtr0113379,FBtr0113381,FBtr0087113 2 3 5 163 2R 12566520 12566538 ACAACATTTATCCCGAGCT 58 12562745 12565927 CATCCAGTACTGATTTCCTCC 59 NA Drosophila melanogaster 50 CG34458 FBgn0085487 FBtr0112764 1 1 1 60 2R 12559861 12559879 CCCAGTTCATCATACATCC 57 12559902 12559921 ATCAGCGACATATCAAAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8311 FBgn0034141 FBtr0087121 3 1 1 67 2R 12475756 12475846 AACATGATCATGGTGAATGC 58 12475708 12475726 GTTGGAAAGAGGACGAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 mrj FBgn0034091 FBtr0087193,FBtr0087196,FBtr0087194,FBtr0087195 3 4 5 150 2R 12093318 12093419 GAAGTGAAGAAGGCATATCGA 59 12092510 12092528 ACTCATCGTATATGCGACG 59 NA Drosophila melanogaster 50 CG8315 FBgn0034058 FBtr0087267 2 1 1 60 2R 11879515 11879533 CGTTGATGTATTCTACGGC 58 11879473 11879491 CACACGGATGTTAAGATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 1 5 7 80 2R 11836644 11836723 CATTTGCTACGTGCTACTC 58 11836582 11836603 GCTCTAGTTATATTCGAGAAGG 57 NA Drosophila melanogaster 50 Mtk FBgn0014865 FBtr0087386 1 1 1 132 2R 11296384 11296402 CAACTTAATCTTGGAGCGA 57 11296498 11296516 GTTGGTTAGGATTGAAGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cp1 FBgn0013770 FBtr0087592,FBtr0087591,FBtr0087593 2 3 3 175 2R 9854324 9854342 AGAACAAGCACAAGATTGC 58 9854541 9854559 TCCCTTGAAGCTTTCATCG 59 NA DesignNoJunction Drosophila melanogaster 50 AGO1 FBgn0026611 FBtr0087613,FBtr0087612,FBtr0087614 2 3 3 103 2R 9835755 9835774 GTATCAGCTATGCCATACGT 59 9835605 9835689 CCAGATGATATCTGGCACG 59 NA Drosophila melanogaster 50 CG6347 FBgn0033874 FBtr0087637 3 1 1 73 2R 9725501 9725519 CCAGAAAGGAGATAGCCAC 59 9725994 9726015 GATATGGCCATTCGTATATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13331 FBgn0033850 FBtr0087672,FBtr0087673 2 2 2 97 2R 9409560 9409578 ACTTCATCCTCGACTACGA 59 9409834 9409852 AATCTCGTAGGATTCCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3814 FBgn0025692 FBtr0087814,FBtr0087813 1 2 2 139 2R 8763437 8763613 TATTGATGTGCCAATTGCTG 59 8763255 8763274 CATACAGATCATGGTCACGA 59 NA Drosophila melanogaster 50 Sin3A FBgn0022764 FBtr0087887,FBtr0087889,FBtr0087890,FBtr0087888 3 4 4 92 2R 8467292 8467310 CAACATGGACTCGAATACG 58 8467116 8467237 TTGGAGACAACCTTATCCAG 59 NA Drosophila melanogaster 50 CG13196 FBgn0033645 FBtr0088084 2 1 1 157 2R 7572774 7572852 AATGATGTACAAGCTCGCA 59 7572635 7572653 CTTAGAAGGAGCTCTTCGC 59 NA Drosophila melanogaster 50 CG9003 FBgn0033639 FBtr0113067,FBtr0113068,FBtr0088088,FBtr0113069 3 4 4 108 2R 7531917 7532003 GATCAGTCCGTGAGAACTC 59 7531827 7531845 AATACCTGCTGATGGACTG 59 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 1 9 9 149 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349137 6349157 GACAGCATCGAATACAAACTG 59 NA Drosophila melanogaster 50 CG12909 FBgn0033507 FBtr0088348 1 1 1 60 2R 6198452 6198470 AGTATGCCAAGCATCTGTC 59 6198494 6198512 TTCTGAAACTTCTTCGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1407 FBgn0033474 FBtr0088436,FBtr0088435 2 2 2 99 2R 5919790 5919808 ATGCTTCTGTTCTACCACC 59 5919621 5919728 GTATCCTCCATTGATCTGGT 58 NA Drosophila melanogaster 50 Orc6 FBgn0023180 FBtr0088482 1 1 1 60 2R 5733261 5733280 GAGCAAAGTACCATCTAGCA 59 5733220 5733239 ATTCTCATTCTGGTTCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10459 FBgn0033440 FBtr0088468 3 1 1 60 2R 5595516 5595536 TGTGAGGGATGTAATCTTCTG 59 5595556 5595576 GCGATCATATGAAGAGGAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8712 FBgn0033258 FBtr0088823,FBtr0088822 2 2 2 62 2R 3985321 3985341 CCTCCAAGTCTATAAGTTCAG 57 3985279 3985297 GCTGTGATACCTCATTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8713 FBgn0033257 FBtr0088780 3 1 1 88 2R 3983739 3983818 TTATGGTCGGGTATATCCTG 58 3983868 3983887 TATAAGGCAGAAGTAGCTCC 58 NA Drosophila melanogaster 50 Dgk FBgn0085390 FBtr0112581,FBtr0112579,FBtr0112578,FBtr0112580 3 4 4 90 2R 3724813 3724831 AGAGTAAGAAACTACGCGC 59 3724658 3724759 TCTCCAAAGTCCTGAATGG 58 NA Nonspecific Drosophila melanogaster 50 CG17985 FBgn0033199 FBtr0088946 2 1 1 60 2R 3539849 3541991 ATGACGAAGCCAATATGGA 58 3539807 3539825 ACCATGTGGTTAAGCAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012 3 7 7 84 2R 3287432 3287450 GATCTACGACAAGGAGACG 59 3287308 3287384 GGTGACTTCATTCCTGGTC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111081 2 1 60 86 2R 3247854 3247873 TAAGGTGCTTCAGTTCTCTG 59 3236472 3247807 TTGTACCATCTAAAGACTGGC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111093,FBtr0111084,FBtr0111066,FBtr0111082,FBtr0111080,FBtr0111101,FBtr0111081,FBtr0111075,FBtr0111071,FBtr0111073,FBtr0111077,FBtr0111068,FBtr0111078,FBtr0111083,FBtr0111051,FBtr0111085,FBtr0111060 3 17 60 161 2R 3241193 3249236 ATTGGTCATCACAGAACCC 59 3236460 3236479 CCTTCGATGAACTTGTACCA 59 NA Drosophila melanogaster 50 pk FBgn0003090 FBtr0089043,FBtr0089044,FBtr0089042 1 3 3 95 2R 3108297 3108315 TTATCTACTTCCACCGGGA 59 3108374 3108516 CCAGGATAATCTCATCGCA 58 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086205,FBtr0086204,FBtr0086197,FBtr0086201,FBtr0086196,FBtr0086198,FBtr0086202,FBtr0086199,FBtr0086200,FBtr0086203 3 10 11 100 2R 2764992 2765010 GTACGAAACAAAGGTAGCG 58 2764846 2764864 AGAACATCCTTGACATGCC 59 NA DesignNoJunction Drosophila melanogaster 50 sced FBgn0013732 FBtr0086110 3 1 1 60 2R 2546666 2546684 AAACTACTACCAGACACCA 57 2546708 2546726 ATAGGAGGGTATCTTGTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sced FBgn0013732 FBtr0086110 1 1 1 60 2R 2546680 2546701 CACCAAGAAAGTCGATTATCAG 59 2546722 2546740 CAGCTGTTCGGATAATAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or42b FBgn0033043 FBtr0086051 3 1 1 61 2R 1684849 1684869 CTTTCAGATATCCATGAGCAG 58 1684744 1684762 TGGTTATCACGGAGAAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 gus FBgn0026238 FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753 1 6 6 61 2R 1005304 1008282 TTGGTGGATTAGATCCCGA 59 1005261 1005279 TTGACGAATTGTTCTTCGG 58 NA DesignRelaxed Drosophila melanogaster 50 Nipped-B FBgn0026401 FBtr0111119,FBtr0111118 3 2 2 82 2R 609820 614139 CTTTGACTCAGAGGATGTAGAC 59 609759 609778 ACTTGGCAACATCAGTACTC 59 NA Drosophila melanogaster 50 Stlk FBgn0046692 FBtr0111111,FBtr0111112 1 2 2 61 2R 447873 447891 GGAAGTTGCAATAGCACTC 58 447913 447934 CGGAGTGAATATAAGTAAGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-2263 FBgn0082990 FBtr0113537 2 1 1 61 2L 5187845 5187864 AAACGATTATTGGATGCTGG 58 5187888 5187906 ATGGAGTGATGCGATTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His3:CG33863 FBgn0053863 FBtr0091867 1 1 1 60 2L 21535006 21535024 TCGAAGATACCAACTTGTG 57 21535048 21535066 ATGTCTTTGGGCATTATGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14401 FBgn0032900 FBtr0081430 3 1 1 136 2L 20870739 20870758 CTTACCAAGTACCATGAGGG 59 20870928 20870946 CCGAGGAAGTTCATAAAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG2608 FBgn0032870 FBtr0081384 3 1 1 92 2L 20646107 20646125 GACTCAATACTCAACGCCA 59 20646181 20646199 CATCCGCTCTAACATTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Victoria FBgn0053117 FBtr0081309 1 1 1 60 2L 19913190 19913208 ATTGACACCTCAGGAAAGG 59 19913148 19913166 TCGTTGTGCCTTATATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS26 FBgn0004413 FBtr0081090,FBtr0081089,FBtr0081091 3 3 3 71 2L 18442715 18442733 CCAGAACAGGAAGTAGAGG 58 18442662 18442680 TATGGAGATGTCAGGTGGT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG31785 FBgn0051785 FBtr0081044 3 1 1 113 2L 18124480 18124498 GTTCATATGTCCGGTAGCC 59 18124318 18124404 CACATCATTTGTGTCTGTCG 59 NA Drosophila melanogaster 50 CG17912 FBgn0032600 FBtr0080893,FBtr0113041 1 2 2 174 2L 16744378 16744700 GCGTACAGTAATGCTACCA 59 16744836 16744856 GTGGATGCATAATCTTTGTGG 59 NA Drosophila melanogaster 50 grp FBgn0011598 FBtr0080886,FBtr0080884,FBtr0080885 3 3 4 113 2L 16692022 16692041 CAGGATAAGCATATCCTCCG 59 16692117 16696595 CACGTCTGGTTCTATTCGA 59 NA Drosophila melanogaster 50 ppk FBgn0020258 FBtr0080638 2 1 1 131 2L 14379783 14379858 CAGGGCTATAAGGTCTTTCTC 59 14379672 14379690 CAAATTGTCAGTGGACACG 59 NA Drosophila melanogaster 50 wb FBgn0004002 FBtr0080620,FBtr0080619 2 2 2 85 2L 14321169 14321187 TCTGATAGGAAGAGCAGCT 59 14321236 14321318 CTCGACAGTTCTGACAGAC 59 NA Drosophila melanogaster 50 CG33115 FBgn0028542 FBtr0080617 2 1 1 87 2L 13968826 13968905 TTGCTATATGACCTGCGAG 59 13968757 13968778 CGTCGTATTCTTATCGTATCGA 59 NA Drosophila melanogaster 50 CG18507 FBgn0028527 FBtr0080528,FBtr0080527 2 2 2 137 2L 13668243 13668261 ATCAGCATAATGGAGGTGG 59 13668697 13668716 GAAGTGTGACAATCACATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG16850 FBgn0032527 FBtr0080505 1 1 1 185 2L 13475616 13475634 CTCCGCTTAGTCATCATGG 59 13475783 13475801 CTTCCATATGCGAGACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rep4 FBgn0028406 FBtr0080478 3 1 1 131 2L 13285635 13285707 GTCATTACAACAGATGCCG 58 13285522 13285540 ATACTCCGTTATCATGCGG 59 NA Drosophila melanogaster 50 Tom70 FBgn0032397 FBtr0080311,FBtr0080309,FBtr0080310 1 3 3 60 2L 12037589 12037607 CCACCAAGGATATGAACGA 59 12037547 12037565 AACATCTCCAGGATACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31705 FBgn0028490 FBtr0080244,FBtr0080243,FBtr0080242 3 3 3 80 2L 11524604 11524623 AGGAGCTGTTTACTATCCAC 58 11524475 11524493 AATGCTCCAGCGATAAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 Ca-beta FBgn0015608 FBtr0080218,FBtr0080217,FBtr0080220,FBtr0080219 3 4 4 119 2L 11165819 11165837 GACAATAACTGGTGGATCG 57 11165652 11165670 ATACAGTCTTGAGGGTCTG 57 NA DesignNoJunction Drosophila melanogaster 50 dUTPase FBgn0013349 FBtr0080157,FBtr0080156 3 2 2 124 2L 11011620 11011638 CATTGTCAAGACCGATCTG 58 11011726 11011744 GATAATCCTCGTCCACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nos FBgn0011676 FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486 3 9 10 161 2L 10831340 10831358 GTCACAGGATTATCGGTCG 59 10826069 10830602 TTCGAGCAGGAAAGAATCTC 59 NA Drosophila melanogaster 50 Trim9 FBgn0051721 FBtr0080096 2 1 1 84 2L 10620161 10620309 ATCAGGATACTCAAGGACCA 59 10620356 10620374 GAGCTTCAATGCAGAACTG 59 NA Drosophila melanogaster 50 Fatp FBgn0021953 FBtr0080133,FBtr0080134 2 2 2 80 2L 10512982 10513000 GCTGGTCTACATCTACACC 59 10512855 10512939 GCGATAAACAGATAACGGGA 59 NA Drosophila melanogaster 50 cdc2 FBgn0004106 FBtr0080051 3 1 1 98 2L 10385158 10385176 GTGACTCGGAAATTGACCA 59 10385021 10385039 TCTTATAGTCGGGTAGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG13125 FBgn0032163 FBtr0079898 1 1 2 100 2L 9924157 9924307 GATACGGTAGAAGGCATCG 59 9924075 9924093 GACAATGGGAAATCTGGCT 59 NA Drosophila melanogaster 50 numb FBgn0002973 FBtr0079821,FBtr0079822 2 2 2 102 2L 9460693 9460711 TGTCGAGGTCTTTGAATCG 59 9460961 9460979 GCTGACATGAAGTAATCCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32988 FBgn0052988 FBtr0079736 1 1 1 60 2L 8865456 8865477 ATCAATGATATGCGGTATCTCC 59 8865498 8865516 TGAATGCGATCAGGATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pvr FBgn0032006 FBtr0079629 1 1 6 154 2L 8227796 8227814 AAATCTGTCGGTCGATACG 59 8226597 8227678 TTGCCGTCTTCAATAAAGC 58 NA Drosophila melanogaster 50 Herp FBgn0031950 FBtr0079493,FBtr0079494 1 2 2 87 2L 7797320 7797411 GGGTGCGATTTATCTATATCAC 58 7797254 7797272 GCCAGCATTATTGTTACGA 58 NA Drosophila melanogaster 50 Uro FBgn0003961 FBtr0079486 2 1 1 61 2L 7780872 7780890 ATGATCGCATCTTTAGCAC 57 7780915 7780933 CAAGTTCTCGGTATCGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Slob FBgn0024290 FBtr0100158 1 1 4 80 2L 7649077 7649315 CAAATTGGCCAGATTCTGG 59 7649015 7649033 GACTAAGTCCTCAACGGAG 59 NA Drosophila melanogaster 50 wg FBgn0004009 FBtr0079433,FBtr0079432 3 2 2 99 2L 7313107 7313125 ATGAATCTGCACAACAACG 59 7314366 7314384 TCTTCACTGTACACGATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17377 FBgn0031859 FBtr0079378,FBtr0079377,FBtr0079376 3 3 3 130 2L 6801803 6801822 ACAATGATAGCATGTCCTGG 59 6801637 6801710 TACTTATAAGCCACACGCG 59 NA Drosophila melanogaster 50 Liprin-alpha FBgn0046704 FBtr0079301,FBtr0079300 2 2 2 80 2L 6726527 6726603 AGAAAGAGGATCAGGAGGA 58 6726647 6726665 CATGCAACGATGTAGACTC 58 NA Drosophila melanogaster 50 CG34180 FBgn0085209 FBtr0112373 3 1 1 65 2L 6060733 6060752 TAAGCATATGCAGCTTTCCA 59 6060780 6060798 TAATCACGGCCTGTATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9135 FBgn0031769 FBtr0079186,FBtr0079185 3 2 2 130 2L 6052015 6052092 AAGAGAAGTACCGATATGTGG 59 6052184 6052202 CAACTTGATGTCTTGGCTG 59 NA Drosophila melanogaster 50 Acp26Ab FBgn0002856 FBtr0079156,FBtr0079157 3 2 2 60 2L 5892669 5892688 GTTCACAATCAAGATCCCAG 58 5892628 5892648 CTGTAGTCGTATAGGGTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8965 FBgn0031745 FBtr0079158 2 1 1 165 2L 5861558 5861576 GAAATCGATCCGATTCGGT 59 5861348 5861429 ACCTTGATTGTGGTCTGTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14006 FBgn0031733 FBtr0079167 1 1 1 60 2L 5727787 5727805 CGTTAAACCAATGGTCCAG 58 5727745 5727766 ATATGAGTCTTGATAAGGGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33995 FBgn0053995 FBtr0100049 3 1 3 170 2L 5047048 5047066 AAGGAATTCGGAATTCGGA 58 5047198 5047284 CGTTATAGATAGCTGCATTCC 58 NA InUTR Drosophila melanogaster 50 hoe1 FBgn0041150 FBtr0077395,FBtr0077398,FBtr0077397,FBtr0077399,FBtr0077400,FBtr0077396 2 6 6 106 2L 4909615 4909687 CATTCTATGGGTTTCCGCT 59 4909527 4909546 GATTCAAGGTGCTATTCTGC 58 NA Drosophila melanogaster 50 CG3964 FBgn0031574 FBtr0077501,FBtr0077502 2 2 2 111 2L 3865422 3865505 CATCATCAAGAACACCACC 58 3865580 3865598 GAACGATCCGGGTATATGG 59 NA Drosophila melanogaster 50 for FBgn0000721 FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305 3 10 10 83 2L 3624270 3624291 CAGCTAATTTCCAATCTAGACG 58 3623866 3624229 GAATTCCTCGTTGATCTTTCTG 59 NA Drosophila melanogaster 50 CG3165 FBgn0031484 FBtr0077642 2 1 1 61 2L 2977853 2977872 GATGTGCAGGAAATCATTCC 59 2977896 2977914 TCCTTGAGGCAAGTTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2991 FBgn0031474 FBtr0077627,FBtr0077625,FBtr0077626 1 3 3 121 2L 2866633 2866651 CCTCACAATTGCATCAGTC 58 2866736 2866826 GTTAACTGGAACCTTGGTC 57 NA Drosophila melanogaster 50 CG2964 FBgn0031462 FBtr0077722 3 1 1 70 2L 2814017 2814036 ATTGTGATAGTGAGTGCCTG 59 2814069 2814087 AAGAAAGCGTAGACCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3528 FBgn0031430 FBtr0077781 3 1 1 62 2L 2517903 2517924 CTATGTAGACAGCTTCATAACC 58 2517862 2517880 CTCTGGATCTCTTTGTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5561 FBgn0031333 FBtr0077947 2 1 1 60 2L 1353771 1353793 GTTACGATAAGAGGATACCAGAC 59 1353733 1353753 TCTGATATCGTCATAGGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dbe FBgn0020305 FBtr0078030 1 1 1 61 2L 869441 869459 CAGAAGTGTTCCCTTCGAG 59 869398 869416 TGATGTCACACCCAATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gs1 FBgn0001142 FBtr0078115,FBtr0078114 2 2 2 63 2L 132960 132978 CTAATTAGCGATCAGGAGC 57 133004 133023 CGTCCACGTCTAATAAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)gl FBgn0002121 FBtr0078166,FBtr0078171,FBtr0078170,FBtr0078167,FBtr0078168,FBtr0078169 2 6 6 90 2L 12208 12293 GACATTAATGGAGTTTCGTCAC 59 12139 12157 CTAAAGCAATACGCTGCAG 59 NA Drosophila melanogaster 50 Cdc42 FBgn0010341 FBtr0074751,FBtr0074752 1 2 2 232 X 19592047 19592065 GCTCATCTCGTATACAACC 57 19592261 19592340 ACTTCTCCTTGACGTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12432 FBgn0030843 FBtr0074433 3 1 1 60 X 17428226 17428244 GGATGCCATTGAGATTTGC 59 17428184 17428205 CTTGAGATGATATGGTGATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8675 FBgn0030834 FBtr0074446 2 1 1 112 X 17142724 17142743 ATGATTCGGACTTCGATTCC 59 17142631 17142649 TTATTTCGCCTTAGCAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0136 FBgn0026666 FBtr0074084 1 1 1 128 X 15629207 15629297 GACAAGTTGGATGAGGAGG 59 15629456 15629474 GTTAAACACGAACTCGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 cngl FBgn0029090 FBtr0089294,FBtr0089293 3 2 2 83 X 15293119 15293253 GCCTAATGGTATACGACGA 58 15293054 15293073 GTATCAGCGCTATCATATCG 57 NA Drosophila melanogaster 50 CG33174 FBgn0053174 FBtr0073826,FBtr0073825 1 2 2 80 X 13696195 13696279 CTCAAGAGCTTGGTTATCCT 59 13696322 13696340 TGCAGTGGTGTAGTAATGC 59 NA Drosophila melanogaster 50 CG11134 FBgn0030518 FBtr0073818 2 1 1 161 X 13632796 13632814 TACCGATCATCGAGAACAC 58 13632939 13633032 CATAGCATTCCGACATGGT 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG11162 FBgn0030509 FBtr0073811 3 1 1 100 X 13571660 13571751 CCAAGTTCAACTACAATTACGG 59 13571811 13571830 CTTAATCCTTTGCGAAGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 c12.2 FBgn0040234 FBtr0071321 1 1 1 80 X 9217684 9217702 ATCATGTCCAGGAGAAACC 58 9217745 9217817 CATCGTAACCATTGAACCTG 58 NA Drosophila melanogaster 50 CG12065 FBgn0030052 FBtr0071215,FBtr0071214 3 2 4 91 X 8480265 8480589 ATACACCACAGTCGATTCC 59 8481291 8481311 GAGTATACACATTCGATTCGC 58 NA Drosophila melanogaster 50 Tom40 FBgn0016041 FBtr0071074,FBtr0071073 1 2 2 125 X 7632816 7632935 GAATCTGGTCTTCAGAGGC 59 7633024 7633042 AAGTTGTTCTTCACGTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG32727 FBgn0052727 FBtr0071056 3 1 1 104 X 7301440 7301458 TCTTTAGATCGCCCAACAG 59 7301526 7301603 ACATCCGTTTCTGAAAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1999 FBgn0029947 FBtr0071054 1 1 1 60 X 7253547 7253565 ATGAAATATCCCGTGAGGT 58 7253588 7253607 CGTTTATATGTCCTGACCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ctr1A FBgn0062413 FBtr0070951 3 1 1 107 X 6559632 6559650 TGGAATATCGACCTGTGAC 58 6560884 6560902 TAATCGACAGCATCGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32750 FBgn0052750 FBtr0070881 3 1 1 168 X 6089883 6089901 ATAGCCACCTTTACAACGG 59 6089675 6089751 GAAATTGAGAGGCTGTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40855 FBgn0085776 FBtr0114227 2 1 1 98 U 7725813 7725832 TAACAATGGCTATCAAGCTG 57 7725890 7725911 GAAGAATTGTAGGTAATAGCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40801 FBgn0085520 FBtr0113933 1 1 1 289 U 2929777 2929869 TTCAATTCATCGTTGAGGG 57 2929406 2929424 AATGGGTATCATCTGGCAC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG31998 FBgn0051998 FBtr0089145 2 1 1 87 4 224662 224680 CAAACGAAGCATACCAGAC 58 222272 224612 TGACGAGTGATATCTCTGTG 58 NA Drosophila melanogaster 50 RpL6 FBgn0039857 FBtr0085804,FBtr0085805 2 2 2 93 3R 27420766 27420784 CAAGAAGGACCAGAAGGAG 59 27420691 27420710 CATGTTCTGCAAGTACTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dco FBgn0002413 FBtr0085742,FBtr0085744,FBtr0085743 3 3 3 210 3R 26884321 26884339 ATACAAAGCCATAAGCGAC 57 26883518 26883536 GATCCCGATCCTATCTTGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG5815 FBgn0027574 FBtr0085106,FBtr0085107 3 2 2 132 3R 22939931 22940011 AAAGACGCATTTACGACGA 59 22940106 22940125 TAACGACGCTTATCATACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10514 FBgn0039312 FBtr0084864 2 1 1 119 3R 21104577 21104596 ACAAGATATTCACTGAGACG 57 21104415 21104495 CTACCGTAGAATGCAAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11857 FBgn0039303 FBtr0084814 3 1 1 165 3R 21085148 21085227 CTCACAGACCTACCAATCC 59 21085355 21085374 GATAAACAGGTTCAAGTGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myo95E FBgn0039157 FBtr0100517,FBtr0084579,FBtr0084578,FBtr0100518,FBtr0100519,FBtr0100516,FBtr0100520 3 7 7 85 3R 19984736 19984819 TATACGAAGCGATCCTTGG 58 19984669 19984687 AACTTTAGAACCACTGCGA 59 NA Drosophila melanogaster 50 CG7126 FBgn0038602 FBtr0083593 3 1 1 168 3R 14128053 14128136 ATAGAGCAACAGTTCTCGG 59 14127903 14127922 TCCAACATACCATAACGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5285 FBgn0038490 FBtr0083409 3 1 1 150 3R 12976555 12976573 ACACCGTTCATCTACAACC 59 12976687 12976766 CATTGCCAAAGGGAATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9632 FBgn0038377 FBtr0083186 2 1 2 106 3R 11686224 11686242 ATCTCCTGTGGAACATGAC 58 11686312 11686498 GACCACCTCAATATCGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yellow-e3 FBgn0038150 FBtr0082759 3 1 1 277 3R 9229964 9229982 CTACATTCCCAGCGTATCC 59 9229640 9229723 GAAAGTACAGAAAGCGGTC 58 NA DesignNoJunction Drosophila melanogaster 50 nerfin-2 FBgn0041105 FBtr0082177 3 1 1 124 3R 5898513 5898531 GAAACGAGTTGTGGAAACG 59 5898617 5898768 TCTTTAGGTAAGCTTGACGTC 59 NA Drosophila melanogaster 50 CG7352 FBgn0037581 FBtr0081842 3 1 1 130 3R 4174217 4174236 GAGTGACTTAGTCCAGAAGC 59 4174328 4174401 TTTCGATTTCTAGGACTTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9636 FBgn0037556 FBtr0081806,FBtr0081805,FBtr0081804 2 3 3 81 3R 4068558 4068648 ATAGCCGAGATCAAACACTG 59 4068496 4068514 TCTCTTGACGATGCAAGAG 59 NA Drosophila melanogaster 50 Os-C FBgn0010401 FBtr0081781 2 1 1 299 3R 3804786 3804856 GGATGTGATCACAGTTGCT 59 3805173 3805191 GCAAACAATTCAGAGCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 dj FBgn0019828 FBtr0089741 1 1 2 60 3R 2885195 2885293 CTTGAGAACTTTAAGGAAGGG 58 2885315 2885333 TTGCGGATCGTGAATAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pi4KIIalpha FBgn0037339 FBtr0078756,FBtr0078755,FBtr0078757 1 3 3 161 3R 1385034 1385112 CTTCCTCTAAAGACTGGCTC 59 1384892 1384913 GTTGCGTATGATATAATCGAGC 59 NA Drosophila melanogaster 50 CG31522 FBgn0051522 FBtr0078941,FBtr0078942,FBtr0078939 2 3 4 81 3R 272537 273433 CTCACATAGTGACTCGAGG 58 272474 272492 GACATATGTGAGGCAAACG 58 NA Drosophila melanogaster 50 CG32206 FBgn0052206 FBtr0089795,FBtr0089796 3 2 2 85 3L 19357771 19357789 TCCGACTCATTTGACTTCG 59 19348663 19357724 GAGAATAGCACATCATCTGGA 59 NA Drosophila melanogaster 50 pip FBgn0003089 FBtr0075008 1 1 11 83 3L 19297392 19297475 ATCACGATGATTGCCTACC 59 19297327 19297345 CCACAACAGCATAATCCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG34256 FBgn0085285 FBtr0112450 1 1 1 60 3L 18982316 18982674 CAAAGACCGCTAATAGAGTG 58 18982275 18982293 TTTGTAAAGTCCGTTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AlCR2 FBgn0036789 FBtr0100242,FBtr0089387 3 2 2 104 3L 18480885 18480903 GATCAGGAAACTTCACACC 58 18480586 18480817 ATGTACGCACTTATGACCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33924 FBgn0053924 FBtr0091928 3 1 1 194 3L 17712680 17712698 AGGGTCGATTAAATGTCGT 58 17712451 17712522 CCACGAAGTAAACAGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10627 FBgn0036298 FBtr0075967 3 1 1 268 3L 12521140 12521158 TCCTAAATCACAAGGGCTG 59 12520821 12520909 ATTATCGGTGTCCTCTTTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG10660 FBgn0036288 FBtr0075976 2 1 1 103 3L 12481307 12481662 AAATATAGGTTCCGTCACCTG 59 12481224 12481243 TATCTTTGATAGGCAGCCAC 59 NA Drosophila melanogaster 50 CG14122 FBgn0036282 FBtr0075985 1 1 1 142 3L 12393886 12393964 ATCATTGCTTCAAGAGGCT 59 12393762 12393780 AGAACCGATCATCAAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32022 FBgn0052022 FBtr0076597 1 1 1 172 3L 8713993 8714066 AACTACCTCAAAGTGTCGC 59 8713839 8713857 TCTGATACTTTACGCTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8044 FBgn0035829 FBtr0076764 1 1 2 265 3L 7969106 7969124 AATGATCGTCAAGATTCCG 57 7968785 7968877 TATTCTCGTCAATGTCGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Srp9 FBgn0035827 FBtr0076750 1 1 1 68 3L 7929588 7929606 AGAACTGGGATGATTTCGA 58 7929638 7929656 TAAGTCGACAGTTCTGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780 1 8 8 125 3L 7811265 7811285 GATGACAAATACAAGGAGGAG 58 7810754 7811178 GTCGGCATATTGTGTTACC 58 NA Drosophila melanogaster 50 CG8549 FBgn0035714 FBtr0076943 2 1 1 60 3L 6746718 6746738 CGTTAAGATGAACAGGAACAC 59 6746759 6746778 GTCCTTGAGAATCTTGATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr65a FBgn0041232 FBtr0076962 3 1 1 70 3L 6659997 6660015 AATCAAGAATCACCCGGAG 59 6659882 6659963 AATCGTTCTAGCAGTTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32245 FBgn0052245 FBtr0073313,FBtr0073311,FBtr0073312 1 3 3 93 3L 4586699 4586719 ACAGACTACTCTACGAAACAC 59 4586774 4588077 GAGTTGAACCTGCATTGTG 59 NA Drosophila melanogaster 50 CG32240 FBgn0052240 FBtr0073336 1 1 1 236 3L 4381319 4381395 CATTTGTGACGGTTCTCAG 58 4381038 4381056 TCTTCATGTACTTGGCCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12010 FBgn0035443 FBtr0073074,FBtr0073075 3 2 2 68 3L 3376030 3376104 GATAGATTCGCTTGTTGGC 58 3376136 3376154 ATCCTCAGCTGAACTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 zormin FBgn0052311 FBtr0110857,FBtr0110858,FBtr0089864,FBtr0110856 2 4 4 129 3L 2132574 2134108 GATTCCAAGTACGAATACGG 58 2132464 2132483 TTACTATCACGTTGCAACTG 58 NA Drosophila melanogaster 50 Nxt1 FBgn0028411 FBtr0072241 3 1 1 115 2R 19699387 19699462 CGATTTGAAAGCCAAGGTC 59 19699220 19699238 CATTGTCCAAATAGAGGCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3536 FBgn0034775 FBtr0071916 3 1 1 200 2R 18634397 18634416 GTATACTCAATATGGGCACC 57 18632233 18632560 AGTATTTGACTTTCTCCAGC 57 NA Nonspecific Drosophila melanogaster 50 CG15658 FBgn0034602 FBtr0071583 3 1 1 91 2R 17085587 17085607 CGGACATTAAGTTTCTGATGC 59 17085660 17085743 ATCAATTTCCTGGAGCGAG 59 NA Drosophila melanogaster 50 CG17999 FBgn0034552 FBtr0071561 2 1 1 158 2R 16736806 16736824 TGAAGACAGCATTACAGCA 59 16736466 16736622 TAGGTGTTCGGATTCTTGC 59 NA Drosophila melanogaster 50 ena FBgn0000578 FBtr0086583,FBtr0086584,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582 2 6 6 93 2R 15048400 15048489 AGAATAAGGTCACCACCTC 58 15048546 15048564 TTAGAGCTTCGTCCTATGG 58 NA Drosophila melanogaster 50 CG10912 FBgn0034296 FBtr0086807 3 1 1 101 2R 13944226 13944244 CAATTCCACCTTCGAATCC 58 13944051 13944161 GAATATGTCGGACCCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tef FBgn0086350 FBtr0087014 2 1 1 147 2R 12942844 12942862 ATCCGCAAGTTAAAGATGG 57 12942657 12942675 TCGGGTTATCTGTGATTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5550 FBgn0034160 FBtr0087033 1 1 1 85 2R 12704661 12704680 CAATGCCACTATCAACTGTG 59 12704726 12704809 GATATGCACCATTCAGATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6262 FBgn0034121 FBtr0087151,FBtr0087152 2 2 5 175 2R 12249021 12249226 TCGAGAAGTACTACTGCGA 59 12249365 12249383 TGATCCTCTGGATTTGCTC 59 NA Drosophila melanogaster 50 Obp50b FBgn0050073 FBtr0087552 1 1 1 89 2R 10258866 10258884 AGTTGGTCTACTGTTGTGG 59 10258937 10259009 AAGGACCATAGTCATCCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13331 FBgn0033850 FBtr0087672 1 1 2 275 2R 9409608 9409821 AGAAGACCAGACTGAGAGG 59 9410060 9410078 GTTCCATGTTATAGGTGCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17059 FBgn0040754 FBtr0087739 2 1 1 94 2R 9107892 9107910 AACATGAAACCGTCTCTGG 59 9108278 9108296 ATCATCATTCCTGTGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930 3 5 6 106 2R 8335508 8335527 TATCATAACCTCAACAAGCG 57 8335595 8335676 GAGTTATCACTTGTGTACGC 58 NA Drosophila melanogaster 50 CG30490 FBgn0050490 FBtr0088209 3 1 1 62 2R 7006863 7006881 CTCAGGATCTAGGAAACGG 58 7004529 7006837 ATATTATTCCCGCTTGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pmm45A FBgn0033377 FBtr0088630,FBtr0088629 1 2 2 70 2R 4996590 4996608 CTTTGACTCCATGAACGAG 58 4996474 4996494 ACTGTTCCTTGATGTACTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 Socs44A FBgn0033266 FBtr0088784 2 1 1 89 2R 4015685 4015703 TTATCCGGAAGAAATGGCT 58 4015756 4015836 ACACTTGGTTGAGCATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11191 FBgn0033249 FBtr0088868 2 1 1 283 2R 3889250 3889440 GTCCTGTCTGAAGTTCCTG 59 3888985 3889003 TCATCATGTATTTGGTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11125 FBgn0033174 FBtr0088974 3 1 1 133 2R 3336438 3336509 CTAAGAAACGCTACGAACAG 58 3336605 3336623 GTATATGCGGATGTCCTCC 59 NA Drosophila melanogaster 50 CG3420 FBgn0033100 FBtr0086135 2 1 1 187 2R 2644445 2644463 ATACTAAGACGGAACCTGG 58 2644138 2644232 TTATCTTTGTCCAGGTGGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG17266 FBgn0033089 FBtr0086144 3 1 1 87 2R 2563161 2563181 TCAAATACAGTCCCAACTGAG 59 2563028 2563113 TATCATTCGTCCGATTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dpit47 FBgn0033083 FBtr0086146 1 1 1 172 2R 2548733 2548808 AGAAGCTCGAGATAGAACG 58 2548579 2548600 CAGAAACTTTGGATAAAGGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpr12 FBgn0085414 FBtr0112626 2 1 1 97 2R 1744803 1744883 TTGAGAAGAGTCCTACACC 57 1744944 1744962 CGTCTCAATGGTTATGTCG 58 NA Drosophila melanogaster 50 CG9243 FBgn0032926 FBtr0110945 1 1 2 190 2L 21166944 21167019 GAGTAGATATACAAATGCGACG 58 21166439 21166457 ATTCCCGAAATAGTCCTCC 58 NA DesignNoJunction Drosophila melanogaster 50 lok FBgn0019686 FBtr0081330,FBtr0081328,FBtr0081329 3 3 3 287 2L 20063602 20063680 CTATTTACTTGCCTGAGTGG 57 20063930 20063948 CTCAAGGAAGTTCTCCTCC 58 NA DesignRelaxed Drosophila melanogaster 50 Hf FBgn0014000 FBtr0081306 2 1 1 266 2L 19967505 19967586 TCTTATCTGTCTGGCTCTG 58 19967257 19967275 ATGAGGTCGCTGTTTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18806 FBgn0042129 FBtr0081307 3 1 1 60 2L 19966186 19966204 ATTCTCAGGGAGCTTAAGG 58 19966144 19966163 ATGAATCATCGAAGTCCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fon FBgn0032773 FBtr0081222,FBtr0081223 2 2 2 162 2L 19383754 19383890 CCAGAACTCGTACGATTCC 59 19383610 19383628 TTACGAGTGAACACTGTGG 59 NA Drosophila melanogaster 50 elfless FBgn0032660 FBtr0081046 1 1 1 81 2L 18010980 18011001 CAAATGAGTATTACGGAGACTC 58 18010852 18010938 CTGGAATACTCCAACAGGA 58 NA Drosophila melanogaster 50 cact FBgn0000250 FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847 3 4 4 65 2L 16314858 16322977 AGATTCGCAACTACGATGG 59 16314811 16314829 AGATATCAATGTGACCCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7631 FBgn0028945 FBtr0080754 2 1 1 77 2L 15628887 15628967 ATCTGAGGAGTTTGATGCT 58 15629006 15629026 CGAATACAAGACGAATACTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5945 FBgn0032494 FBtr0080450 1 1 1 60 2L 13240852 13240870 CCAAAGATCAAGGACTTGG 58 13240894 13241506 TATCCAGTTCAGGATCTGC 58 NA DesignNoJunction Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020 1 17 17 86 2L 12723994 12724013 AGACCTATCAGATCAGACAG 57 12724062 12724215 ATTTGAGCACCTTAATGCC 58 NA Drosophila melanogaster 50 CG17768 FBgn0032240 FBtr0100253 2 1 1 77 2L 10403555 10403747 GTTATTTGCACCTCAAAGGA 58 10403497 10403515 ATATTTGATGGTGCTCCCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4901 FBgn0032194 FBtr0079947 1 1 1 77 2L 10212204 10212222 AGATTACATCCACACCGTG 59 10212263 10212344 AATATCAACACGTCGTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 jp FBgn0032129 FBtr0113030,FBtr0079861,FBtr0079860 1 3 3 85 2L 9549654 9550211 AGGTTAAGGACTGGTTTGTG 59 9549588 9549608 CATGTAGACAAATAGAAGCGC 59 NA Drosophila melanogaster 50 CG7224 FBgn0031971 FBtr0079532,FBtr0100151 3 2 2 158 2L 7999166 7999265 AGTGAGCTATCTATCGACG 58 7999387 7999405 GAGAATTCATCCAGCTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Traf1 FBgn0026319 FBtr0077429,FBtr0112925 2 2 3 126 2L 4372535 4378920 AGATTATCTATCCCGGTCCC 59 4379009 4379027 TTACAGGCGTTGAGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Art2 FBgn0031592 FBtr0077476 2 1 1 279 2L 4279022 4279098 TTCTTCAGGCACAAGACTG 59 4278635 4278653 ACGACTCGAGCATATTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 sob FBgn0004892 FBtr0077558 2 1 1 69 2L 3579695 3579713 CAGCTCTTAATCTCCAGGC 59 3579644 3579662 AATACATCCGATTTCCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9870 FBgn0031422 FBtr0077768 2 1 1 68 2L 2383993 2384014 GCTATAGTCTGTTGGTAAACTC 58 2384043 2384114 CGTGAAGGAATAGCAAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31664 FBgn0051664 FBtr0077895 2 1 1 81 2L 1825124 1825194 AAATAACAGGGTCGTGGTG 59 1825061 1825080 CAGAAGTTCACCTTCTTGGA 59 NA Drosophila melanogaster 50 CG34016 FBgn0054016 FBtr0100071 2 1 1 156 2L 1099804 1099823 AAACAAGTGGTCAGATTGTC 58 1099942 1102163 AAACAAATACACTGCGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 KH1 FBgn0086130 FBtr0078009 1 1 1 60 2L 812445 812464 CCTAGATGATACGTTCACAG 57 812487 812570 CAAGTGGAAGGGAAATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lectin-21Cb FBgn0040106 FBtr0078046 1 1 1 63 2L 621511 621529 TCCAATACCGTACGATGAG 58 621132 621484 CGGATAATCGATCAAACGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32658 FBgn0040859 FBtr0073628,FBtr0073626,FBtr0073627 3 3 3 142 X 11985664 11985685 GCTTAGTCTAGGAATCAATTGC 59 11985851 11985869 GTTGGCCAAACATCAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CR32658 FBgn0040859 FBtr0073628,FBtr0073626,FBtr0073627 1 3 3 132 X 11985664 11985685 GCTTAGTCTAGGAATCAATTGC 59 11985841 11985859 CATCAAGTGTGCGTTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33502 FBgn0053502 FBtr0070055 1 1 1 195 X 21482189 21482207 GGAGAGCTTGAAGTTCCTG 59 21480961 21480979 CTTAATCAGGCTCCACTCG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG13008 FBgn0030780 FBtr0074322 3 1 2 60 X 16606132 16606150 GAAAGATTGGAGGAACTGC 58 16606174 16606192 TAGACTCTCCCAATGTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lsp1alpha FBgn0002562 FBtr0073651 2 1 1 60 X 12384992 12385011 CAGCAAATTTGTGATGGAGG 59 12385034 12385052 CAGGCTAGTCTTCATCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab40 FBgn0030391 FBtr0073669 3 1 2 116 X 12355849 12355868 CTAAAGGTTCTACTGGTGGG 59 12355696 12355771 GATATGAGATGTGCAGTCGT 59 NA Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 2 8 9 95 X 10692568 10692661 CGAATAAGGGTGAAATTTGC 57 10692492 10692510 GCATGATCCGTTTAATGGT 58 NA Drosophila melanogaster 50 Ant2 FBgn0025111 FBtr0073426,FBtr0073425 3 2 2 101 X 10674035 10674054 GTTTATCCACTGGACTTTGC 59 10673656 10673677 GATCACCTTCATTAGACAATCG 58 NA DesignNoJunction Drosophila melanogaster 50 ey FBgn0005558 FBtr0100396,FBtr0100395,FBtr0089235 3 3 4 182 4 728297 731562 TGTCACAGTGGAGTAAATCAG 59 731704 733134 TCCTGTTTCATAATACCTCCC 58 NA Drosophila melanogaster 50 Eph FBgn0025936 FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086 1 4 5 108 4 640795 640889 GCTCAACAGATATCCAGGT 58 640961 640979 TTATAGTGTCGAGTTGCCG 59 NA Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451 3 4 8 101 4 159114 159132 AAGCGGCTAAAGACTAGTG 59 159195 160910 CGTAAGAGTACCAGTCTTGTC 59 NA Drosophila melanogaster 50 alpha-Est4aPsi FBgn0027934 FBtr0090038 3 1 1 126 3R 3353508 3353608 CATTTCGATGCTAACTGGG 58 3353698 3353716 GACAAATCGTGGTGAACTC 58 NA Drosophila melanogaster 50 spz FBgn0003495 FBtr0085141,FBtr0114372,FBtr0085144,FBtr0085142,FBtr0085137,FBtr0085138,FBtr0085145,FBtr0085146,FBtr0085140,FBtr0085143,FBtr0112834,FBtr0085139 3 12 12 93 3R 22891840 22891858 GATGAGTACAAACAGGCCA 59 22891698 22891716 TTGGATTATAGCTCTGCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG16732 FBgn0039086 FBtr0084419 3 1 1 60 3R 19361143 19361163 CAATTATCTGGAATGGCTGAG 58 19361103 19361124 CGGTTAGAGTATCTTTGTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15499 FBgn0038891 FBtr0084124 3 1 1 183 3R 17357749 17357767 CACATTGATGAAGGTGTGG 58 17357358 17357379 CAGACAATTATGGATTAGAGCC 58 NA DesignNoJunction Drosophila melanogaster 50 AnnIX FBgn0000083 FBtr0089517,FBtr0089520,FBtr0089518,FBtr0089519 2 4 4 243 3R 16893207 16893794 TACTACCCATTCAAGTGCA 58 16894001 16894019 TAACATCCTCGAATTTGCC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 fru FBgn0004652 FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642 1 13 13 131 3R 14261181 14261201 ATGTCAGATACTCAGAGATGC 59 14260763 14260781 TGTTATCTGTGAGACCACG 59 NA DesignNoJunction Drosophila melanogaster 50 koko FBgn0051232 FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629 3 5 5 84 3R 14229544 14229623 TACGATGAGTTCCTCATTGC 59 14229670 14229688 TGACATCGCGTATCTTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 alt FBgn0038535 FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416 3 6 6 165 3R 13500933 13500951 GTAGCAACCACAATAGCAC 58 13500723 13500804 AATGTGTTTGTCGTCTTGG 58 NA Drosophila melanogaster 50 CG5399 FBgn0038353 FBtr0083164 2 1 1 101 3R 11521856 11521874 TGTCCTTCAGCAATTTCCA 59 11522012 11522030 CAGATATCAGGGTCAGAGG 58 NA DesignNoJunction Drosophila melanogaster 50 Kap-alpha3 FBgn0027338 FBtr0082108,FBtr0082106,FBtr0082107 3 3 3 158 3R 5402864 5402942 GAAAGACCAGGATGAAATGC 59 5402725 5402743 TTCTTCAGGTCAATGGACG 59 NA Drosophila melanogaster 50 CG8121 FBgn0037680 FBtr0082017,FBtr0082019,FBtr0082018 1 3 3 101 3R 5161887 5161905 TATGCTCATTGTCTTTGCC 58 5161970 5162218 TTCCTCTCGTATTCCTTGC 59 NA Drosophila melanogaster 50 CG11619 FBgn0036836 FBtr0075046 3 1 1 60 3L 18980557 18980576 CACCGCTCAATTTGATAGAC 58 18980516 18980536 GACTGATTGTAGGCATATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7011 FBgn0036489 FBtr0075645 3 1 1 97 3L 15155932 15156099 ACAATGCTACTCACTGCTG 59 15155853 15155873 CTTACATTGCTCGATCTTGTC 59 NA Drosophila melanogaster 50 HGTX FBgn0040318 FBtr0114619,FBtr0075720 2 2 2 94 3L 14577188 14583109 CAGGTTAAGGTCTGGTTCC 59 14577112 14577130 CCCATATCGTCCTGTTTCC 59 NA Drosophila melanogaster 50 dpr6 FBgn0040823 FBtr0076353 1 1 1 86 3L 10030498 10030518 CCATAAATCTCACTTGCACTG 59 10030563 10033968 CATAATTAATGACCTCCTCGTG 58 NA Drosophila melanogaster 50 MTF-1 FBgn0040305 FBtr0113323,FBtr0113322,FBtr0113324,FBtr0076460,FBtr0076459 3 5 5 189 3L 9429056 9429074 CATACGAATGTGAGGTGTC 57 9429335 9429353 TCTTCCGGACATTTGTAGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Cpr65Aw FBgn0052404 FBtr0077023 3 1 1 64 3L 6135437 6135455 TAATCCTGGTCAGCTTCTG 58 6135391 6135410 GTATCTCAGTATCTGGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14966 FBgn0035415 FBtr0073108 3 1 1 60 3L 3197212 3197230 TCTAGGTCTTCGAAAGAGC 58 3197170 3197188 TATCTTGTTTCGCGATCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1146 FBgn0035346 FBtr0072921,FBtr0072922,FBtr0072923 3 3 3 70 3L 2491992 2492010 CTACTCCATCACCGATCTC 58 2492044 2492062 TTTCGTTGATGTACGTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7995 FBgn0035266 FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767 3 5 5 158 3L 1743700 1743718 CCATCTCCACGTACTTCTC 59 1743909 1743927 TTACATCCGTGATGTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34057 FBgn0054057 FBtr0100835 1 1 2 81 3L 897936 897954 CTAAACGAGTACGACTGGT 58 898054 898072 AAGGGTATAGAAACAGGCG 59 NA DesignNoJunction Drosophila melanogaster 50 Kaz1-ORFB FBgn0063923 FBtr0072488,FBtr0100851,FBtr0072492,FBtr0072493,FBtr0072490,FBtr0100224 2 6 6 110 3L 217695 217713 AGTACAATCCAATCTGCGG 59 217866 217884 GACAAATTCCCTTGTGCAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 zip FBgn0005634 FBtr0072398,FBtr0072399,FBtr0100467,FBtr0100466 1 4 4 80 2R 20879487 20879567 CAAATGGATAAGCTGAATAGCC 59 20879428 20879447 CTTCTCCTTCTGCAATTCCT 59 NA Drosophila melanogaster 50 Lcp9 FBgn0025578 FBtr0072430 1 1 1 60 2R 20667763 20667782 GAGGCTGATGTTGTAAAGAG 58 20667722 20667743 CATAAGCGTAGTTAAAGTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11406 FBgn0034990 FBtr0100169,FBtr0072276 2 2 2 154 2R 20090339 20093349 CTATCCATTGGATCGTAGCA 59 20090044 20090062 CATATCGCAGCGTATTCAG 58 NA Drosophila melanogaster 50 Rep FBgn0026378 FBtr0086462 1 1 1 101 2R 15380881 15380899 TACAACTGTCGCACTACAC 59 15381021 15381039 AAATGGCTAGATCAGACGC 59 NA DesignNoJunction Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457 1 11 15 108 2R 15365201 15366256 TTCACTCTGGTCAAACCAG 59 15366328 15366346 TTGGAGAAGAAGCTCATGC 59 NA Drosophila melanogaster 50 Spt5 FBgn0040273 FBtr0086531,FBtr0086532 3 2 2 83 2R 15328659 15328736 TGGATACAATCCAAGTACCC 58 15328782 15328800 CTGTCCGATCCATACAGAG 58 NA Drosophila melanogaster 50 CG34188 FBgn0085217 FBtr0112381 2 1 1 168 2R 11314962 11314981 ATATCATGCAAGATGACGAG 57 11314739 11314757 TAAACTTCCTCCATTCGTG 57 NA DesignNoJunction Drosophila melanogaster 50 Hr46 FBgn0000448 FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367 3 4 4 111 2R 6095623 6095704 CAATTTCCGCGATATTTCCA 58 6095531 6095550 CGAATCTATCGAGAACAGCT 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111101 1 1 60 123 2R 3219876 3229223 GAAAGTTAATGTACCTCCCAG 58 3219773 3219792 TTTCTTCCATGTAACTTGGG 57 NA Drosophila melanogaster 50 CG31680 FBgn0051680 FBtr0081383 3 1 1 60 2L 20640330 20640350 AGTACAAATACCTATCCACCG 59 20640370 20640390 GTGTTTACCCTTTCTATCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lok FBgn0019686 FBtr0081329 2 1 3 245 2L 20061998 20062152 AGATCAAATCGCTGGATCTC 59 20062597 20062617 CATTCTTTAGGATTCGCATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG4839 FBgn0032187 FBtr0079944,FBtr0079943 2 2 2 171 2L 10151495 10151514 ATATTAACATACCGCCAGCA 59 10151645 10152707 GCCATTTGATCTTGACTATTCG 59 NA Drosophila melanogaster 50 GlcAT-S FBgn0032135 FBtr0079842,FBtr0079841 3 2 2 132 2L 9621298 9621316 AAATCCCAGAACTAACCCG 59 9621411 9621491 GTAAAGGGCATACCAAATCG 58 NA Drosophila melanogaster 50 Cka FBgn0044323 FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538 1 4 4 98 2L 8036254 8036272 ACATCAATGGAAACGAGAG 57 8036391 8036411 CCACGATTATTTCATCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9641 FBgn0031483 FBtr0077677,FBtr0077676 3 2 2 60 2L 2975673 2975691 GAAGACTTGGGAATTTGGC 59 2975631 2975650 GCTTATTACTACCACCTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NTPase FBgn0024947 FBtr0077680,FBtr0077682,FBtr0077683,FBtr0077681 3 4 4 213 2L 2881498 2881516 GAAGCTTATCGCAAGAAGG 58 2881242 2881260 ATTTCTCGTCGCTAGTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9883 FBgn0031435 FBtr0077693 2 1 1 60 2L 2578334 2578353 GGCATTAAGAACATCGAACC 59 2578376 2578394 GCTTAAAGGATTCCTCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2789 FBgn0031263 FBtr0078066 2 1 1 62 2L 560104 560122 TTGACATAGTTGCACTCAC 57 560148 560166 TGTTCACTCGGTAGAACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12398 FBgn0030596 FBtr0073976 2 1 1 105 X 14807144 14807217 GATATAGATTTCCTTCGCCAC 58 14807059 14807077 AATCCTGTCTGAGATCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14815 FBgn0023516 FBtr0070368,FBtr0070367 2 2 2 79 X 1762731 1762821 AGTTACGTAGCATCTCCAC 58 1762670 1762688 GAGAGGATTAACTCCACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14298 FBgn0038654 FBtr0083695 1 1 1 143 3R 14701519 14701537 ATCAATCTGACGTTCCTCC 59 14701644 14702464 ATTGTTCAGCTCTTTGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6791 FBgn0037918 FBtr0082458,FBtr0082459 3 2 2 101 3R 7414207 7414283 AGATTGTGACTCCCAATACC 59 7414125 7414143 TGTAACCCTTGTAGCAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33784 FBgn0053784 FBtr0091785 1 1 1 213 3R 5893842 5893918 TACGACTTGCGTACTAACC 59 5894150 5894171 GTCATCATTCAGAACCATTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5047 FBgn0037008 FBtr0078215 2 1 1 70 3L 20513102 20513120 GAAATGGGATTCAATGCCA 58 20512991 20513068 GGAGGAATCATCAAGAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17300 FBgn0036345 FBtr0075892 3 1 1 61 3L 13079885 13079903 ACATTTGCTGTGATTAGGC 58 13079716 13079863 TTAATAATCTCGCTATCAGCCC 59 NA DesignNoJunction Drosophila melanogaster 50 Or59b FBgn0034865 FBtr0072021 3 1 1 79 2R 19358057 19358075 TCCCATCTCTATGAACAGC 58 19357942 19357960 CCAGATTCATTTGTCGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11206 FBgn0034720 FBtr0071846,FBtr0113106,FBtr0071847,FBtr0113107 1 4 4 80 2R 18227482 18227501 GTATATCACGAGTGTTTGCC 58 18227291 18227440 AGTAGTCGGCATATTCAGTC 58 NA Drosophila melanogaster 50 grp FBgn0011598 FBtr0080886,FBtr0100459,FBtr0080884,FBtr0080885 2 4 4 92 2L 16696754 16697510 TATGTTTAGGTGCAAGGGC 59 16697565 16697584 TGATATGCCTTCTGTAGCAC 59 NA Drosophila melanogaster 50 Cf2 FBgn0000286 FBtr0089649 3 1 3 78 2L 4879196 4880311 ATTTAACGACTCACACGGG 59 4879136 4879154 GTCAGATAGTCCTTCACGC 59 NA DesignNoJunction Drosophila melanogaster 50 mir-281b FBgn0086607 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 kl-3 FBgn0001314 FBtr0113756 1 1 1 123 YHet 54719 62665 TTCAGTATCCGCAATACAC 57 62752 62770 TTTAAGGGCAGTACTTCCT 57 NA Drosophila melanogaster 50 CG17167 FBgn0039941 FBtr0113729,FBtr0113728 3 2 2 127 XHet 57117 57598 CAAGCATCTTAACGACGAG 58 57689 57707 ATAGCGTGACCTTAATGGG 59 NA Drosophila melanogaster 50 CR34311 FBgn0085340 FBtr0112509 3 1 1 61 X 20254970 20254989 GATTCAATCAGTGGATGGAC 58 20254928 20254949 CACTATATTGGAAGGTAAGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32745 FBgn0052745 FBtr0070932 2 1 1 150 X 6174690 6174709 CCATCAAGATCTTCAAGCTG 58 6174559 6174577 TGTCTCATCGCAATGAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32730 FBgn0047092 FBtr0071016 1 1 1 185 X 7041895 7041913 CTTATAAGCCGGGTTACCC 59 7040647 7040665 GTGTTCTTACTCGTTTCCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14476 FBgn0027588 FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058 1 5 5 94 X 21472297 21472387 CAGTAGATGATTTCAAGATCCC 58 21472224 21472242 GTGCAACATCAAGGTTGAG 59 NA Drosophila melanogaster 50 CG14476 FBgn0027588 FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058 2 5 5 95 X 21472298 21472388 CCAGTAGATGATTTCAAGATCC 58 21472224 21472242 GTGCAACATCAAGGTTGAG 59 NA Drosophila melanogaster 50 cactin FBgn0031114 FBtr0077305 3 1 1 62 X 20295784 20295802 GTAGAGGTACTGTCTCTGC 58 20295828 20295846 TTTCTTGACCTTCTCCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14220 FBgn0031036 FBtr0074768 2 1 1 157 X 19495369 19495446 TGAAGGAGCAAATGTACCA 58 19495230 19495249 CATGTACTCCTTGTAGACCT 58 NA Drosophila melanogaster 50 l(1)G0156 FBgn0027291 FBtr0074780,FBtr0074781 1 2 2 81 X 19413855 19413945 GAACATTATGCGCATGTCC 59 19413792 19413810 TTCGAACTGGATTTCTGGG 59 NA Drosophila melanogaster 50 CG7453 FBgn0030991 FBtr0074667,FBtr0074666 1 2 2 63 X 19074922 19074940 CTGATATACACCAGGAGGG 58 19074967 19074985 GTACCTGGCTTATCCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12672 FBgn0030886 FBtr0074539 3 1 1 60 X 17900777 17900797 TACATATCTCTTTCCCTGTGG 58 17900737 17900755 GAAGTTACTGTCCAGATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arp8 FBgn0030877 FBtr0074544 3 1 1 73 X 17753355 17753373 CTTCGATGCGGAGTATCTG 59 17753300 17753318 TGGATAGCTGCAAGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10598 FBgn0003057 FBtr0074400 3 1 1 139 X 17120018 17120037 ATTAACGAAGGCTACTCTGG 59 17119898 17119916 ATTTACCAGCCCTTGTTCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 mRpL22 FBgn0030786 FBtr0074330 1 1 1 86 X 16678589 16678607 AAGGAGACCATACTGGAGG 59 16678657 16678789 GAAGGATTCGGCTATCCAC 59 NA Drosophila melanogaster 50 CG9915 FBgn0030738 FBtr0112992 1 1 1 159 X 16205246 16205324 TCAAATGAACCAGAGAACAG 57 16205106 16205124 AAGCGTTCTTCATACTGAC 57 NA Drosophila melanogaster 50 eas FBgn0000536 FBtr0074213 3 1 5 180 X 16174016 16175020 AGAAGAATGTTCGTCAGAC 57 16175164 16175182 GATTTATCCTCCGGTTTGG 57 NA Drosophila melanogaster 50 eas FBgn0000536 FBtr0074215 3 1 5 103 X 16175299 16175485 AGTTTAAGATCAGGGTAGTTCC 59 16177711 16177729 TTTGTTTGTGATGCCATCG 59 NA Drosophila melanogaster 50 Or13a FBgn0030715 FBtr0074133 1 1 1 80 X 15870532 15870551 AACAGCCTGTAAGGATTACG 59 15870591 15870683 TTATCGAGGTACTTAGAATGGC 59 NA Drosophila melanogaster 50 CG8924 FBgn0030710 FBtr0074131,FBtr0074130 1 2 2 67 X 15837294 15837312 GAATGTCCACCTATCCCTG 59 15837402 15837420 AATCCAAGTATTGCTGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 Graf FBgn0030685 FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197 3 6 6 81 X 15646356 15646433 AACCAATGTTCGTTACTCC 57 15646293 15646312 ATAGTTCTCCGGAATGAGTC 58 NA Drosophila melanogaster 50 CG8239 FBgn0030683 FBtr0074087 1 1 1 163 X 15643975 15644055 GAATGAAGTTCATCGATTGGC 59 15644180 15644198 TATCGTAGAGTCGGGACAG 59 NA Drosophila melanogaster 50 CG15643 FBgn0030654 FBtr0074072 1 1 1 60 X 15465267 15465285 CATTGGATACTACAGCTGC 57 15465225 15465243 CTCATAAACACCGCAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15642 FBgn0030642 FBtr0074076 1 1 1 77 X 15361277 15361295 TCATTTGTGGAACCTGGAG 59 15361218 15361236 TATAGGCGTACGGATTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18210 FBgn0030636 FBtr0074081 2 1 1 151 X 15314086 15314104 CAAGAAGATCCTCTCCAGC 59 15305094 15305112 CATCCTTGACAAACTTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 dob FBgn0030607 FBtr0073961 3 1 1 60 X 14962461 14962482 ATCAGAAATCAGGAGAAGAACC 59 14962503 14962521 GTGTCAGATTCTCAACGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Flo-2 FBgn0024753 FBtr0073951,FBtr0073949 1 2 6 118 X 14818434 14819687 CAAGATCATGAAGTCATCTTCG 59 14820847 14820865 TCTGCTTGATCTCCTTGAC 58 NA Drosophila melanogaster 50 CG1492 FBgn0030361 FBtr0073579 3 1 1 74 X 11905013 11905031 AAGTTTGGATTCGTCAAGC 58 11904876 11904894 ATGACTGGTCAAATTCGAC 57 NA DesignNoJunction Drosophila melanogaster 50 Sclp FBgn0030357 FBtr0073591 1 1 1 101 X 11816333 11816351 AAACACAGAGTTGATCACC 57 11816186 11816271 GACAGATTAAGATCTGTGATGG 58 NA Drosophila melanogaster 50 CG11802 FBgn0030346 FBtr0073600 2 1 1 65 X 11765984 11766002 ATATACCGCAGTTTCTGCC 59 11765937 11765955 CTGCATCTCGTGTATTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PhKgamma FBgn0011754 FBtr0090002 1 1 3 87 X 11592621 11593364 CAACCAAATGCTGTTCGAG 59 11593415 11593433 GATCTCAGTGATGCGACTC 59 NA Drosophila melanogaster 50 CG2371 FBgn0030323 FBtr0073533,FBtr0073532,FBtr0073534 3 3 3 75 X 11571989 11572007 CATATTGCGTTTGTGGGTG 59 11571932 11571950 GACATTTGATTCGTACCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11697 FBgn0030313 FBtr0073511 1 1 1 60 X 11467401 11467419 AAATATGGATCTGCTGCAC 57 11467440 11467461 GGAAATAGGCTCCTTAATAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073487,FBtr0073485,FBtr0073489 1 3 12 194 X 11284563 11289280 ATCTGGATTCGGTGAATGG 59 11289438 11289456 TATCGTTGATGCTCAGACG 59 NA Drosophila melanogaster 50 CG15211 FBgn0030234 FBtr0112977,FBtr0073376,FBtr0112975,FBtr0112976 3 4 4 188 X 10667186 10671999 AAATTGTGGAGTTTGTGCTG 59 10672150 10672250 TCAGCTCCGAGAATATCCA 59 NA Drosophila melanogaster 50 Hk FBgn0001203 FBtr0089804 2 1 2 95 X 10137434 10137453 ACAATACTAGCGACGAATCG 59 10135758 10136876 TGATCGAACGACTGAACTC 59 NA Drosophila melanogaster 50 Ost48 FBgn0014868 FBtr0071344 3 1 1 60 X 9051082 9051100 CTTCACTTCAAGGATGAGC 58 9051040 9051058 ACTACTGCGACTTCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15365 FBgn0030077 FBtr0071357 2 1 1 293 X 8950811 8951050 AAATTTGGCAGTACCACTG 58 8950366 8950491 CTCCTTGTCTTTCTCATTGTG 58 NA DesignRelaxed Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274 1 10 10 163 X 8768353 8768371 GATGAGAACGAGAACGAGG 59 8768131 8768227 TCTTGTTTCAGAGCCTTGAG 59 NA Drosophila melanogaster 50 Cp36 FBgn0000359 FBtr0071203 3 1 1 64 X 8374061 8374079 CAGGAGGTGATCAACAAGG 59 8374106 8374125 TTGTAGACCTTCACGTAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15335 FBgn0030001 FBtr0071193 1 1 1 158 X 8021225 8021243 CAGTCTGGAGTATACGGTG 58 8021003 8021103 CTGGCATTTCTATCGTGAC 58 NA Drosophila melanogaster 50 CG33222 FBgn0053222 FBtr0071138 1 1 1 60 X 7792863 7792881 GTAAATACACCGTGGAAGC 58 7792821 7792840 GGATTCTTCTTGAGAACGAC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 dec-1 FBgn0000427 FBtr0071146,FBtr0071145 2 2 3 108 X 7764290 7764311 CCAGTCAATTCGTATCAAAGTC 59 7764005 7764221 GCTTCGGGTTTATTGTCCT 59 NA Drosophila melanogaster 50 CG32721 FBgn0027553 FBtr0071077 1 1 1 103 X 7620817 7620835 ATATGAGGATCCCTTCCTG 57 7620670 7620688 AGATGAACTCGTCGAAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 MAPk-Ak2 FBgn0013987 FBtr0070837,FBtr0070838,FBtr0070839 1 3 3 94 X 5654849 5655215 TAGACTACGATCAGATGCA 57 5654773 5654792 GTATAACTCCATCTCCTCGA 57 NA Drosophila melanogaster 50 ctp FBgn0011760 FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704 2 4 4 185 X 4585720 4585738 AGTGAAGTTGTAAGCACAC 57 4592339 4592357 ACTCCTTCTTGATGTAGGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 ctp FBgn0011760 FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704 1 4 4 184 X 4585720 4585738 AGTGAAGTTGTAAGCACAC 57 4592338 4592356 CTCCTTCTTGATGTAGGCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 peb FBgn0003053 FBtr0100265,FBtr0070680 1 2 2 178 X 4514859 4514877 ATACGGAGAACTTCACCTG 58 4515310 4515328 AACTTGATGCTGTTTGTGG 58 NA DesignNoJunction Drosophila melanogaster 50 ng1 FBgn0002933 FBtr0070523 3 1 1 135 X 3136703 3136722 CTGTCACTCACTATAAGCGA 58 3136820 3136838 GGAGTGGATTTCCTATTGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 mRpL14 FBgn0040389 FBtr0070405 1 1 1 70 X 2238352 2238370 CATGTCTACAACAAACGCG 59 2238300 2238318 TTCATCTGTCCCTTGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14798 FBgn0029588 FBtr0089693,FBtr0089694 2 2 2 289 X 1587078 1587096 AAATCGAGCCTCACATCAG 59 1587475 1587493 GACAAAGTCATGGGATCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG14797 FBgn0029587 FBtr0070271 2 1 1 204 X 1577962 1577981 TAAGAACGATAGTCTCCAGC 58 1578201 1578219 GATCTGGAATAGGGTCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32813 FBgn0052813 FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219 2 4 6 224 X 1283913 1283931 CAACCATTCGTTCATGGAC 59 1284337 1284355 TTGATAAGGATCACGTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177 3 4 5 149 X 938609 938687 CAATCTGGATAAGGCTCCT 58 938800 938818 CTATCTGGCATACCTGGTC 58 NA InUTR Drosophila melanogaster 50 CG3690 FBgn0040350 FBtr0070185 1 1 1 97 X 844061 844079 CAACAATCTGATTGTGGCC 59 843917 844002 GTCCACTGGTCATTATAAGCT 59 NA Drosophila melanogaster 50 Or1a FBgn0029521 FBtr0070070 1 1 1 112 X 210301 210319 AACCTTCCTCCTAAACACC 58 210393 210523 ATCCAAACAAGAAGAGGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG40798 FBgn0085519 FBtr0113932 3 1 1 61 U 8057366 8057384 TACAGTTGAGGGAAGTGAC 58 8057323 8057341 TCTGTTAGCGGTTAACTGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41517 FBgn0085662 FBtr0114107 2 1 1 60 U 2654931 2654950 TGTGTAACATCGTTTCAGTC 58 2654890 2654909 TCCTTGTTTAATTCGACCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40092 FBgn0058092 FBtr0113790 2 1 1 75 U 235262 235281 CAAATCTGCTCTATCTCGGT 59 235206 235224 AATTTGTTTCGCGGTTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11077 FBgn0039930 FBtr0089222 1 1 1 60 4 1049844 1049864 TAAAGCGTACCTAAAGGATGG 59 1049804 1049822 TATAGTATCGCCCAGACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me28S-U1554 FBgn0086060 FBtr0114336 2 1 1 64 3R 22630251 22630272 GCCAGCGTAGATATTATATCAC 58 22630296 22630315 CTATGGTTATGCCTCTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or85e FBgn0026399 FBtr0081896 2 1 1 60 3R 4461540 4461561 ATCAGGTATGATATTAGCCTGG 58 4461501 4461519 CCATTAGCAGACGGAAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2135 FBgn0039874 FBtr0085858 3 1 1 154 3R 27595743 27595762 ACTCTTGGTATCAGAACTCG 58 27595554 27595626 AATAAAGGCGGGAAGTGAG 59 NA Drosophila melanogaster 50 ttk FBgn0003870 FBtr0085827,FBtr0085825,FBtr0085829 2 3 6 150 3R 27554189 27558647 AACAGCACTTCCGTTACTC 59 27558761 27558779 TTTCATCGCTGATCTCCAG 59 NA Drosophila melanogaster 50 Med FBgn0011655 FBtr0085815,FBtr0085816 3 2 2 85 3R 27440095 27440113 TATTATCTGGATCGCGAGG 58 27440162 27440236 AGGTCAAACACCTTTATGC 57 NA Drosophila melanogaster 50 pygo FBgn0043900 FBtr0085806 2 1 1 108 3R 27402727 27403037 TTTCTTTCACAGAACCTGTG 58 27402638 27402656 AATATGCTTGGAAGACACG 57 NA Drosophila melanogaster 50 CG31204 FBgn0051204 FBtr0085814 3 1 1 60 3R 27218615 27218635 GCTAACTAATGATCTAGCCCT 58 27218575 27218595 GAAGTGCAAATAGTCATCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31030 FBgn0051030 FBtr0110834,FBtr0085579 3 2 2 60 3R 25991359 25991377 TTACCTTCGATGATCAGCG 59 25991317 25991335 GAATGCATGAAAGTGATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31038 FBgn0051038 FBtr0085497 3 1 6 90 3R 25722870 25722889 TAGATGGTCATGTGATTGGT 58 25722939 25723030 GAGTTTCCAAGTTTAGTTCCAG 59 NA Drosophila melanogaster 50 CG7824 FBgn0039711 FBtr0089927,FBtr0089926 3 2 2 64 3R 25684325 25684343 GGAGAAGGAAATGTCCAGG 59 25684279 25684297 CTCTTGCCTCTGTATTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp99a FBgn0039678 FBtr0085450 1 1 1 211 3R 25497737 25497755 TTCAACGTGGAGAACATCC 59 25497930 25497948 TAGGACCTAAGCCACTAGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Ptp99A FBgn0004369 FBtr0100523,FBtr0085424,FBtr0085422 2 3 5 130 3R 25288288 25297381 GACAATTATGTGCCAAGCA 58 25297475 25297493 TGTATGTGGAACACATGGT 58 NA Drosophila melanogaster 50 Moca-cyp FBgn0039581 FBtr0085286,FBtr0085287 3 2 2 115 3R 24168242 24168260 GAAGATTCAAACAGCGAGG 58 24168337 24168413 GTTTCATTGTCTTCGCTATCG 59 NA Drosophila melanogaster 50 CG31323 FBgn0051323 FBtr0084988 1 1 1 81 3R 22009621 22009639 TGGGCAGTTCAATTATGGA 58 22009684 22009782 CAGTCTATGCAGTAGCCAC 59 NA Drosophila melanogaster 50 CG14543 FBgn0039404 FBtr0084968 3 1 1 60 3R 21882773 21882794 GCTGAATTGAGTAAACTTCCTG 59 21882815 21882833 AGGTGATCTTAACATCCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 exo84 FBgn0086476 FBtr0084978,FBtr0084977 2 2 2 193 3R 21876052 21876072 GACACATGGATTAATCTCACC 58 21875824 21875898 ATTACAAAGTTGGGATCCAC 57 NA Drosophila melanogaster 50 m4 FBgn0002629 FBtr0084980 2 1 1 105 3R 21850135 21850153 CTACAGCGTGAAGAAACTG 58 21850048 21850067 CAGAGACTCCAAAGAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31300 FBgn0051300 FBtr0084824 3 1 1 117 3R 21110522 21110540 AACTCTGGGATGAAATCCA 58 21110690 21110709 TCCTGTATAAGGTCGTTCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11844 FBgn0046214 FBtr0084775,FBtr0084777,FBtr0113354 1 3 4 85 3R 20949829 20950321 ATAGAACTGGCGTCAAGTC 59 20950370 20950388 TAAGTCCTCAATGTCCTGC 58 NA Nonspecific Drosophila melanogaster 50 slo FBgn0003429 FBtr0100624 1 1 17 81 3R 20513556 20513574 AAGCGTCACTATACCACAG 59 20513619 20517191 CTTCATGAACCTTGACTCG 58 NA Drosophila melanogaster 50 CG5720 FBgn0028471 FBtr0084633 3 1 1 94 3R 20140913 20140992 TCCACCACTATCCTCTCAC 59 20140837 20140856 AGTACTTGCACATGGTAGTC 59 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084570,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 1 6 6 80 3R 20025044 20025063 CTAAGACTATGTCCGAGCTG 59 20024922 20025001 TGATCAGCGTAAACTTGGA 58 NA Drosophila melanogaster 50 Miro FBgn0039140 FBtr0084596 1 1 2 67 3R 19861354 19861372 AACTGTATACCAAGCTGGC 59 19861018 19861036 GTAGAACAGTATCCAGGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13604 FBgn0039137 FBtr0113275,FBtr0113276,FBtr0113277,FBtr0084509 2 4 4 125 3R 19815591 19815609 ATTTGGATTATGAGCCGGT 59 19815424 19815503 TATTTCCAGTTGTCTGCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG5854 FBgn0039130 FBtr0084495,FBtr0084494 1 2 2 66 3R 19760640 19760754 ATAAGCGCTATTTGATGCC 58 19760784 19760802 TTCATTGTCTCGTTCAGGT 58 NA DesignRelaxed Drosophila melanogaster 50 Lsd-1 FBgn0039114 FBtr0084456,FBtr0084455 1 2 3 88 3R 19590398 19590480 CCCGAAATGATGTACTGGA 59 19590532 19590550 ATTTGCTTGACAGAATCGG 58 NA Drosophila melanogaster 50 CG10217 FBgn0039113 FBtr0084464,FBtr0084465 1 2 2 156 3R 19587469 19587487 TAGTACAGTCTGCTCTTGG 57 19587273 19587349 ACCAAGAATTCTCGTTCTG 57 NA Drosophila melanogaster 50 CG13827 FBgn0039068 FBtr0084376 1 1 1 142 3R 19085753 19085831 AACCTCATGAGGACAATGC 59 19085996 19086014 ACAAAGTCGAGTGAGATCC 59 NA Drosophila melanogaster 50 CG17110 FBgn0039050 FBtr0084350 2 1 1 106 3R 18920032 18920108 GTACATTGTGGCAACTTCG 59 18920176 18920196 CAGCTTATCCATCACAAAGTG 59 NA Drosophila melanogaster 50 CG33093 FBgn0053093 FBtr0084287 1 1 1 81 3R 18356839 18356859 AGGAGCACTCTTCATAAACTG 59 18356721 18356798 CACTACTCTATGTTGCAAAGC 59 NA Drosophila melanogaster 50 CG5386 FBgn0038945 FBtr0084240 3 1 1 173 3R 18167877 18167896 TTTGTTTGGGAGTTGTTTCG 59 18167632 18167650 GTAACTCGTGCAACAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7084 FBgn0038938 FBtr0084202,FBtr0084201 3 2 2 90 3R 18128384 18128492 CTATATGGGCGATACGTACG 59 18128545 18128563 CGAATACACAATGATGGGC 58 NA Drosophila melanogaster 50 CG5849 FBgn0038897 FBtr0084125 2 1 1 80 3R 17568319 17568337 TCAAGATGTTTCATCACGC 58 17568378 17568474 CGCTATAACGATATTTCTCCAG 58 NA Drosophila melanogaster 50 E2f FBgn0011766 FBtr0084118,FBtr0084119,FBtr0084117 3 3 3 202 3R 17449734 17449752 AGATCAACGTCTTCCTCTG 58 17449363 17449568 GGGCGTTTGAAATAATCCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG5892 FBgn0038873 FBtr0084052 2 1 1 127 3R 17069338 17069356 CAATGTGATTGAGTGCCTC 58 17069447 17069524 TCTTGGCCCAAGTATACAC 58 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0112915 1 11 12 80 3R 17033375 17036516 ATCTATCAGATCTGGAAGAGG 57 17036558 17036576 TGGGTATCAGATCATAGCA 57 NA Drosophila melanogaster 50 CG12278 FBgn0038847 FBtr0084003 3 1 1 60 3R 16869954 16869972 CCCACTCCCAAGAAATCAG 59 16869996 16870014 AGTACGTAGTACAAGTCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17838 FBgn0038826 FBtr0113256,FBtr0083960,FBtr0083963,FBtr0083958,FBtr0083961 1 5 8 83 3R 16624057 16624076 CTAGCATAATGTCCTTGACG 58 16624122 16631677 TACCGACTACGTATTCACG 58 NA Drosophila melanogaster 50 CG5191 FBgn0038803 FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905 1 5 5 88 3R 16396363 16396821 TGTCGACAGGTAAATCCTC 58 16396873 16396891 ATCACGTTGTCTATCTCCC 58 NA Drosophila melanogaster 50 CG4323 FBgn0038797 FBtr0083891,FBtr0083892 2 2 2 80 3R 16327293 16327370 CAGATTAGGAGATCTATCGAAGG 59 16327235 16327255 TCATAGTGCATCATGGTAACC 59 NA InUTR Drosophila melanogaster 50 CG5023 FBgn0038774 FBtr0083866 3 1 1 105 3R 15999893 15999911 CGAGGACATTCTCAAGGAC 59 15999980 15999998 CATCAGTTGGAAGTTGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bnl FBgn0014135 FBtr0083795 2 1 1 88 3R 15626212 15653384 GTGAATTCACAATTCTCCAGC 59 15626144 15626162 GTCCATGCAGAGATACAGG 59 NA Drosophila melanogaster 50 CG11659 FBgn0038731 FBtr0083797 1 1 1 80 3R 15602169 15602249 GGCAACTATCATCTGACCA 59 15602107 15602125 AATGGTGGTAAGCAAACCA 59 NA Nonspecific Drosophila melanogaster 50 GluClalpha FBgn0024963 FBtr0083787 3 1 4 176 3R 15591434 15591455 AGATCTGCTAGATACAGATAGC 58 15592362 15593259 CTAGAACATTGTCTTGTGGG 58 NA Drosophila melanogaster 50 CG3773 FBgn0038692 FBtr0083737 3 1 1 194 3R 15055967 15055985 GTTTATGCCATTCCGAACC 59 15056143 15056217 ATGCGAACCTCCTTTACTC 59 NA Drosophila melanogaster 50 CG31475 FBgn0051475 FBtr0083735 2 1 1 199 3R 15026238 15026256 TATCGAAGACTTTGGTGGA 57 15026418 15026508 ATCAGTCATCTCTTTGAGGG 58 NA Drosophila melanogaster 50 CG5555 FBgn0038686 FBtr0083746 3 1 1 108 3R 15004415 15004433 CAAGACAGAGGTTTCCGAG 59 15004259 15004346 CTGTACATCCTTTAGCTTAGCT 59 NA Drosophila melanogaster 50 gukh FBgn0026239 FBtr0089767 2 1 4 149 3R 14839140 14839158 GATCAGAAGGAGATCCAGG 58 14846750 14846768 TGCAGTGTCCAATAGATGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Rim FBgn0053547 FBtr0091514 3 1 1 82 3R 13704711 13705800 GTTGTAAGCGAACAAGAGC 59 13704647 13704665 GTGATATGGTGGTGACCAG 59 NA Drosophila melanogaster 50 osa FBgn0003013 FBtr0089581,FBtr0089582,FBtr0089583 3 3 3 111 3R 13533853 13533871 ACATCTCAATATTCGCCGT 59 13533696 13533778 GATTCGGTTCGGGATACTG 59 NA Drosophila melanogaster 50 CG10326 FBgn0038453 FBtr0083336 1 1 1 109 3R 12470098 12470281 CCACAGTGTTTGTAATCGTC 59 12470353 12470371 CATGAGGATGAGTAGGGTG 58 NA Drosophila melanogaster 50 CG5073 FBgn0038331 FBtr0083094 3 1 1 81 3R 11198670 11198691 GAAGGAGTTCGTCAAATATTCC 59 11198732 11199123 GAATACTGCATTCGGTTGTC 59 NA Drosophila melanogaster 50 Gyc88E FBgn0038295 FBtr0083028,FBtr0083027,FBtr0110961 2 3 3 95 3R 11013392 11013410 GGATGAGCTGCTGTATCAG 59 11013469 11013557 ACGCTATCGAACATCTCAC 59 NA Drosophila melanogaster 50 CG3563 FBgn0038259 FBtr0082989,FBtr0113234,FBtr0082988 1 3 3 125 3R 10616865 10616883 GTTACAGTAGTGCCTCGAC 59 10616970 10619180 GATAAGTGGCTTGTATCTTGC 59 NA Drosophila melanogaster 50 stumps FBgn0020299 FBtr0112893,FBtr0082958 3 2 3 115 3R 10418460 10418478 GAATTCTTGCAACGAGACC 59 10418557 10418736 GCGATTTGCTACTTGTTGG 59 NA Drosophila melanogaster 50 CG3259 FBgn0038221 FBtr0082924 2 1 1 97 3R 10128406 10128424 ATTATACACGCCGGAAGAG 59 10128484 10128562 TTGTTAGTTTGGTTGCATCG 59 NA Drosophila melanogaster 50 Orc2 FBgn0015270 FBtr0082866 3 1 1 121 3R 9792174 9792192 CATTCATCTACTGGCCTCC 59 9792347 9792365 TTTCGTTCGTATATGGCAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG9813 FBgn0038143 FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767 3 6 6 149 3R 9200197 9200215 CACCTTCTGGAACAAACTC 58 9199920 9200008 GCAAACATTACCTTTGCCA 59 NA Drosophila melanogaster 50 CG32473 FBgn0052473 FBtr0082743,FBtr0082744,FBtr0082742 1 3 3 94 3R 9136816 9136899 GGAATTTGACGTGAAGCAG 59 9136955 9136975 TGAGCTTATAAGTACTGCCAC 59 NA Drosophila melanogaster 50 Osi22 FBgn0038133 FBtr0082738 3 1 1 63 3R 9117197 9117215 CACCAAAGTCTTACCACTC 57 9117242 9117260 CAGAAATGGAACAATGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11670 FBgn0038114 FBtr0113230,FBtr0113231 3 2 2 84 3R 8869499 8869518 CAAGTCGTAAACACTATCGC 59 8869562 8869652 GTATAAACACCTGGAAGTTCAC 58 NA Drosophila melanogaster 50 CG11600 FBgn0038068 FBtr0082646 2 1 1 122 3R 8463050 8463068 TAAGATTCCTGCTATCCGT 57 8463261 8463279 GTTGAAGAAAGTGCTTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG17639 FBgn0038029 FBtr0114565,FBtr0082576 3 2 2 101 3R 8210530 8210937 TCACGGACTACTATTTCCC 58 8211002 8211020 CCAAGATTGTGTTTAGCCA 57 NA Drosophila melanogaster 50 Pglym87 FBgn0011270 FBtr0082620 3 1 1 60 3R 8057660 8057678 ACAAGGACATTATGAGCCT 58 8057618 8057636 TCGTCTAGTTCGTAGACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpr17 FBgn0051361 FBtr0082543,FBtr0082542 3 2 2 100 3R 7936142 7936161 AGATTAGCGATAGTGACGAG 58 7936224 7936318 AATTAATGAGCCGATCGTG 57 NA Drosophila melanogaster 50 CG14736 FBgn0037986 FBtr0089692,FBtr0089690 2 2 3 136 3R 7867672 7867744 ACTACAAGAGCAGGTACTG 58 7867906 7867924 GCAGGACTCTGTTTAACAC 58 NA Drosophila melanogaster 50 CG31211 FBgn0051211 FBtr0082480,FBtr0082479,FBtr0082481 3 3 3 247 3R 7777464 7777482 CACTAACCGAAATCCTGCT 59 7778479 7778558 TTATGCGAGCTTTCAACTC 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG31389 FBgn0051389 FBtr0082419 3 1 1 81 3R 7467517 7467535 TAATTACACGGTTAGCTGC 57 7467580 7467598 AAGGAGAAGGGTTCTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL3 FBgn0020910 FBtr0082349,FBtr0082346,FBtr0082348 3 3 5 94 3R 7048443 7049127 CAAGAACTGGTACAAGAGCA 59 7049184 7049202 GGAAGTCATTCTCGATGCT 59 NA Drosophila melanogaster 50 CG9386 FBgn0037708 FBtr0082115 1 1 1 60 3R 5380365 5380384 GGTCTGTTAGTTCATGTCCT 59 5380324 5380345 TTCTTATATCGTAGCCATACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rlc1 FBgn0014023 FBtr0082121 1 1 2 74 3R 5340821 5340842 CTTAAAGTACAGGGAGAAACTC 58 5340715 5340733 ATCATCATGACTTCGTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 Nmdmc FBgn0010222 FBtr0081996,FBtr0081997 3 2 2 117 3R 4868664 4868682 ACCAAGGACATGGTTAAGC 59 4868498 4868583 GGCGAACTTCTTCAAAGTC 59 NA Nonspecific Drosophila melanogaster 50 pyd FBgn0003177 FBtr0089782,FBtr0089781,FBtr0114459 2 3 8 82 3R 4660661 4661006 CATATACGGTACCCTACGA 57 4660597 4660615 GTAGATGCTGTACTTGCTG 57 NA Drosophila melanogaster 50 CG9839 FBgn0037633 FBtr0081934 3 1 1 60 3R 4630818 4630837 GACTACGATCCAGATTGGTC 59 4630777 4630795 TGGGAAATTTGAAGAGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9684 FBgn0037583 FBtr0081853 3 1 1 83 3R 4187678 4187699 CAGTAATCGTTGCTATATTCGC 59 4187390 4187637 GCTATGGTATTAACCTTCTTGC 59 NA Drosophila melanogaster 50 CG10435 FBgn0037539 FBtr0081820 3 1 1 89 3R 3837065 3837083 TACTATGGGTTTCCCTCTG 57 3836934 3836952 AGTGGAATAAGGTGTTCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG31482 FBgn0051482 FBtr0081679 2 1 1 121 3R 2427252 2427327 TATGCTAAAGTGCTAGCCA 58 2427412 2427430 TCGTACCAGTCTTGAACAC 59 NA Drosophila melanogaster 50 dpr11 FBgn0053202 FBtr0081704 1 1 1 120 3R 2358447 2358465 TTCATCATGTGGTACCACG 59 2357761 2358363 TTAATGAGCCAATCGTGCT 59 NA Drosophila melanogaster 50 CG15580 FBgn0037398 FBtr0078622,FBtr0078621 3 2 2 93 3R 1881011 1881137 ATACCCGAATCCTATACGC 58 1880936 1880954 ATGTAGTTATTCCGACGCA 58 NA Drosophila melanogaster 50 Hpr1 FBgn0037382 FBtr0078667 1 1 1 169 3R 1645559 1645577 ACAACTGGAAGAACGAAGG 59 1645354 1645427 TGTTAGGTTGTCATTTCCCA 59 NA Drosophila melanogaster 50 cas FBgn0004878 FBtr0078725 2 1 1 220 3R 1540441 1540459 GTCCCAAGGTGTATGTGAG 59 1540169 1540257 TTTGTGCTTGTCCATATCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG1427 FBgn0037347 FBtr0078702 1 1 2 80 3R 1428647 1428720 TTCTAGGCAAATTTCGGCT 59 1428763 1428782 TCGGGTTATTCCAATTCCTG 59 NA Drosophila melanogaster 50 CG34277 FBgn0085306 FBtr0112472 1 1 1 60 3R 1196910 1196930 GATATCTAGCTCCAAGCAGTC 59 1196952 1196970 GAATATCCGGATGGAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31538 FBgn0051538 FBtr0078819 1 1 1 60 3R 1102672 1102690 GGAAGCATCCAAAGAACCT 59 1102630 1102648 CTACTGGTACTGCTATCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078809,FBtr0078810,FBtr0100199 2 9 15 152 3R 1119084 1119796 AAGTATTCTCAAGACGTTCCTC 59 1118953 1118971 TAAAGAGTTCCGGCTTGTC 59 NA Drosophila melanogaster 50 katanin-60 FBgn0040208 FBtr0078827 2 1 1 117 3R 1054550 1055438 CTACTTCAAGGGTATCCGG 58 1054451 1054469 GTTGAAGAACGTAGTTCCG 58 NA Drosophila melanogaster 50 Karybeta3 FBgn0011341 FBtr0078860 1 1 1 140 3R 476445 476527 TTCTACAAAGGGCTTCCAG 59 476631 476649 CTCGTCGATCAGATTCCTG 59 NA Drosophila melanogaster 50 CG34357 FBgn0085386 FBtr0112567 3 1 2 81 3R 320709 320727 ATGATGAACACCTTCTGGC 59 320259 320664 ACTCATCCAAGCCAATAGG 59 NA Drosophila melanogaster 50 CG34357 FBgn0085386 FBtr0112567 1 1 2 80 3R 321844 322205 TTCAACTCCGTGTATGAGC 59 321782 321802 GAGCATTTGGAACATAGTGTC 59 NA Drosophila melanogaster 50 CG31528 FBgn0051528 FBtr0078923 2 1 1 73 3R 243027 243045 CTTCTGTTAAGCAGAGCGA 59 243082 243100 TGCAGTAGAAGTCATCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-1837a FBgn0086660 FBtr0091629 1 1 1 60 3L 5757427 5757446 TCAACACTTGCAAAGATCAG 58 5757386 5757404 AGTCCTGAATAATAGGCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14450 FBgn0037184 FBtr0078537 3 1 1 60 3L 22719988 22720006 GAGAACAAGACGAACAACG 59 22719946 22719965 GATTAAATAGTCGGGCTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DNApol-eta FBgn0037141 FBtr0078489 3 1 1 198 3L 21933823 21933899 ACGAGAAGAATGGAACCTG 59 21933643 21933661 ATGAAGTCCTTCTCAAGGC 59 NA Drosophila melanogaster 50 CG7611 FBgn0037094 FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362 2 8 8 109 3L 21518809 21519094 ACCTTAAGGACCTAGAGCC 59 21519167 21519185 ATTGCCATCATCCAAATGC 59 NA Drosophila melanogaster 50 CG11309 FBgn0037070 FBtr0078407,FBtr0078406 3 2 2 138 3L 21297075 21297093 TCAAGTGGCACTATTACCG 59 21296625 21296643 GAACCGTAATGCTGATCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG10508 FBgn0037060 FBtr0078302,FBtr0078303,FBtr0078301 3 3 4 87 3L 21208529 21208548 CTATTATCGAACGAATGGCC 58 21208598 21208690 GTGACATAATCGGCTAGCA 59 NA Drosophila melanogaster 50 CG11458 FBgn0040637 FBtr0078265 3 1 1 281 3L 20898973 20898991 TCATCGGAGTGATCTTTGC 59 20899235 20899254 GGATCTTTGGTGTTTACCAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Pitslre FBgn0016696 FBtr0078250,FBtr0078247 3 2 4 83 3L 20769141 20769282 CAGGATCTTTAAGGAATTGGGA 59 20769326 20769344 GACAACATGTTCTTCACGG 59 NA Drosophila melanogaster 50 CG13253 FBgn0037015 FBtr0113182,FBtr0113183 1 2 2 99 3L 20706707 20706794 TCAAGAACCTAGAGGACTG 57 20706626 20706644 TATGTGAATTTGCTCGGTG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 Toll-9 FBgn0036978 FBtr0078240 1 1 1 80 3L 20357654 20357775 GATGCTGAAGACTTTGCTC 58 20357592 20357612 TAGTAGTTCACAATGGTGTGG 59 NA Drosophila melanogaster 50 Mi-2 FBgn0013591 FBtr0100394 3 1 2 112 3L 19903143 19903164 GAGAATGACGATAATTTCCAGG 58 19881565 19881642 TCTTCGTCGTTCTGATTCG 59 NA DesignRelaxed Drosophila melanogaster 50 Paps FBgn0020389 FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885 1 6 6 93 3L 19853427 19853509 TAGACAGCATGGAGATCCT 59 19853566 19853584 AACTCATCCTTCCTCTTGG 58 NA Drosophila melanogaster 50 CG9449 FBgn0036875 FBtr0074980,FBtr0110902 2 2 2 76 3L 19487944 19487965 TGTAAATGAGACCTACTATCCC 58 19487491 19487509 TACCAATGTTGAACAGCTC 57 NA DesignNoJunction Drosophila melanogaster 50 Max FBgn0017578 FBtr0075018 1 1 1 97 3L 19256254 19256272 ATGCATACAGACGATGAGG 59 19256110 19256193 GTGCTTGTATCTGCTTAGC 58 NA Nonspecific Drosophila melanogaster 50 CG18136 FBgn0036839 FBtr0075040 2 1 1 94 3L 18994616 18994634 TCTCCATGAGACCAATACC 58 18994484 18994558 CAGAAAGTTCCTCCATTGC 58 NA Drosophila melanogaster 50 CG18223 FBgn0036832 FBtr0075071 2 1 2 145 3L 18912829 18912847 TGTGATCAATCTGCCTACG 59 18912653 18912671 TCTTCTCACAGATATCCCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG18223 FBgn0036832 FBtr0075070,FBtr0075071 3 2 2 60 3L 18913252 18913271 CTTTCCAGTCCCTATTTCGA 59 18913211 18913230 TCGAGACTACATATTTGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED11 FBgn0036811 FBtr0075054 2 1 1 60 3L 18739199 18739217 TTTCTCAAGAGTCTGTCCA 57 18739241 18739259 GGGTCAAGTAGTTGATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6034 FBgn0036750 FBtr0075194 1 1 1 60 3L 17739072 17739091 CCATAAGCTCTTTGTACCAG 57 17739031 17739049 TTTGAGACCCTCTATCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 frc FBgn0042641 FBtr0075228 3 1 1 60 3L 17425284 17425305 TGTTACAGGGAATCTAGATCAG 58 17425245 17425264 CACAAACACTGAGTCATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32169 FBgn0052169 FBtr0113428,FBtr0075285 3 2 3 82 3L 17061140 17061158 TTGATCTAACCAATGGGCA 58 17060462 17061097 CTGATAGTTGTTCATCACTGAC 58 NA Drosophila melanogaster 50 CG14057 FBgn0036696 FBtr0075286 1 1 1 80 3L 17037753 17037827 CCATTGATTACTTTGATCGGAG 59 17037694 17037713 CTTGTTGCATTGGATGATGG 59 NA Drosophila melanogaster 50 CG4098 FBgn0036648 FBtr0075361 3 1 1 171 3L 16601945 16601963 CTACAACGTGCAGAATGGA 59 16601736 16601810 GATATTCTTGCCGGTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33257 FBgn0053257 FBtr0075378 1 1 1 60 3L 16339814 16339832 GAATGGCTATCACTACCGA 58 16339856 16339874 CTCAAAGTAACCACCTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32160 FBgn0052160 FBtr0075367 1 1 1 60 3L 16303365 16303384 CAACTGTACCTTCAATGGTG 58 16303407 16303425 GACAAATCACCATAACGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dcp2 FBgn0036534 FBtr0100528,FBtr0075539,FBtr0075538 2 3 4 86 3L 15815230 15815248 GGTACTGTATCCTCGAAGC 59 15815103 15815181 GCTGACAATCTTCTCATTGC 59 NA Drosophila melanogaster 50 Eig71Ek FBgn0014851 FBtr0075575 2 1 1 140 3L 15654551 15654572 GAATAGGACGATTTGATGAGAC 58 15654729 15654747 ACATATCATCACAGCGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7650 FBgn0036519 FBtr0075591 2 1 1 62 3L 15603330 15603348 CTTGAGTACTACTGCAGCA 59 15603286 15603304 CTTATTATCGCCTCCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAP71E FBgn0036518 FBtr0075567,FBtr0075569,FBtr0075568 2 3 3 89 3L 15593709 15593797 AAGTTCAAGGTCTCTACGA 57 15593849 15593868 GTAGTACTCATAGTTGTCGC 57 NA Drosophila melanogaster 50 CG17081 FBgn0036480 FBtr0075638 2 1 1 120 3L 15120744 15120856 AAACATTGGATCAGTTGCAG 59 15120939 15120957 TGATTGTAGCGATCATCGG 59 NA Drosophila melanogaster 50 Or71a FBgn0036474 FBtr0075659 2 1 1 81 3L 15070456 15070474 ACTTAAATCGACCGGTGAC 59 15070343 15070411 GCTTGATTCATGGTCTTGG 58 NA Drosophila melanogaster 50 shd FBgn0003388 FBtr0075675,FBtr0075676 2 2 2 91 3L 14613773 14613793 TGAATATTCTGGAGCTCAAGG 59 14613845 14613921 GTTGGCTAACGTTTCTATGC 59 NA Drosophila melanogaster 50 CG8783 FBgn0036397 FBtr0075786,FBtr0075785 2 2 2 60 3L 13992990 13993008 GTGAAGCTGTATCAGATGG 57 13992948 13992966 AGTACATGATCTCCTCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rgl FBgn0026376 FBtr0075796,FBtr0075794,FBtr0075793,FBtr0075795 2 4 4 102 3L 13902205 13902224 AAACTTTAGTTCGCTCAAGG 58 13902061 13902142 GACTTCCATCCTTTCTTTAGG 58 NA Drosophila melanogaster 50 bru-3 FBgn0036379 FBtr0075815 2 1 2 165 3L 13644687 13657528 ACAAGTTACTGTAAGTTGCC 58 13595512 13595530 TCTAACATCGTCTTCGGTC 58 NA Drosophila melanogaster 50 bru-3 FBgn0036379 FBtr0075816 1 1 2 80 3L 13631656 13657530 CAACAAGTTACTATGAACCGTG 59 13577352 13577370 AAATTTGACGAAAGCGCAG 59 NA Drosophila melanogaster 50 Vps36 FBgn0086785 FBtr0075818 2 1 1 80 3L 13505256 13505274 GACAGATTTGCGAAATGCT 59 13505136 13505156 TTACACGACAGTAGACATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32117 FBgn0052117 FBtr0075905 3 1 1 63 3L 12896342 12896361 CAGTACATAGCCATGAAACG 58 12896298 12896316 AGATCTTCGGTTTGGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10632 FBgn0036302 FBtr0114611 3 1 4 114 3L 12533237 12533498 ATGTCTACAAGGCCAATCG 59 12533141 12533160 TACTTTGCATACTCACTGCT 59 NA Drosophila melanogaster 50 Ncc69 FBgn0036279 FBtr0075987,FBtr0075988 1 2 2 92 3L 12363400 12363418 GACCTGTCCTTTATAGCGG 59 12363258 12363345 CGAATTGCTCACAAGATTGG 59 NA Drosophila melanogaster 50 CG10418 FBgn0036277 FBtr0075954 1 1 1 80 3L 12329936 12330017 AACGACCTCAGCATATGTG 59 12330060 12330079 ATCTGTGACACTGATATCCG 58 NA Drosophila melanogaster 50 CG17144 FBgn0036267 FBtr0076015 1 1 1 60 3L 12200715 12200733 CAATCTCTTCGATGCTGAC 58 12200673 12200691 ATGGTTATCCGCCAATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rh7 FBgn0036260 FBtr0076020 3 1 1 161 3L 12159969 12160350 TTAGGAGACATTGCCTGTC 58 12159826 12159844 GATGATCAGGTAGGATCGC 59 NA Drosophila melanogaster 50 CG7248 FBgn0036229 FBtr0076043 2 1 1 60 3L 11949554 11949574 GAATTTGTGCAGATAAGGCAG 59 11949596 11949614 TACTTGCTACAGTTCCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pi3K68D FBgn0015278 FBtr0076088,FBtr0076087 1 2 3 80 3L 11769208 11769291 CGTACTTACTGTGATGATACAC 58 11769149 11769168 CACTTCACATATGTGTTGGG 58 NA Drosophila melanogaster 50 CG6084 FBgn0086254 FBtr0076139 2 1 2 85 3L 11614370 11614388 CTTCGAACTGACACCTGAG 59 11613755 11614322 GACCGTATTGGTTGAGTAGG 59 NA Drosophila melanogaster 50 CG7600 FBgn0064766 FBtr0076165 1 1 1 60 3L 11206683 11206701 TGTAGCGATGCTAATTTGG 57 11206725 11206743 GAAAGAGAACTTGTGCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)01239 FBgn0010741 FBtr0076238 1 1 1 60 3L 11067091 11067110 ACTGTGATAGAAACTCTGGA 57 11067050 11067068 CACCAATTTGACGAAAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32069 FBgn0052069 FBtr0076241 3 1 1 141 3L 11055602 11055620 TGAATCTTCACTCCTGTGC 59 11055413 11055431 ACGAATGAGGTTTAGCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aps FBgn0036111 FBtr0076250,FBtr0076251,FBtr0076252 1 3 3 80 3L 10889924 10889944 TACGACAAGGATGGATTTAGG 59 10889710 10889882 GGTTACCAAGAGTACCTCC 58 NA Drosophila melanogaster 50 CG34238 FBgn0085267 FBtr0112432 1 1 1 152 3L 10619999 10620017 ATCCTAGTTGTGTTCGTGC 59 10620133 10620206 ACTCCACAATCAATCCCAC 59 NA Drosophila melanogaster 50 CG12362 FBgn0036082 FBtr0076282,FBtr0076281 2 2 2 60 3L 10406358 10406377 TAATGTCCTGAATTTGCCAC 58 10406397 10406418 GTCCCATTTGAAGTGATTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6718 FBgn0036053 FBtr0076362,FBtr0076363,FBtr0076365,FBtr0076364 1 4 4 102 3L 9854030 9854111 TCTCTACCATTGGCAATCTG 59 9853947 9853965 AAGTAGGGTATGCCAATCG 59 NA Drosophila melanogaster 50 I-2 FBgn0028429 FBtr0112935,FBtr0076370 3 2 2 72 3L 9829169 9829188 TACTAAAGACTTCGCGTAGC 59 9829048 9829066 TTCAGCTCATCGAACTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4484 FBgn0035968 FBtr0076503 2 1 1 66 3L 9196706 9196724 GTGGCTAGATATCATGCCA 58 9196598 9196619 CCTGTTTCAGTGGTACTATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Dhpr FBgn0035964 FBtr0100531,FBtr0100532,FBtr0076531 2 3 3 89 3L 9128542 9128561 CATGAACCGTAAATGGATGC 59 9128613 9128631 TCTTGGGTCCACTTAAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gug FBgn0010825 FBtr0076619,FBtr0076618 3 2 4 81 3L 8463407 8463428 GCCAAATATGCTTATACCTAGG 58 8463467 8463539 CTGTAAATACTGTAGTTGGTCG 58 NA Drosophila melanogaster 50 CG7112 FBgn0035879 FBtr0113153 1 1 2 105 3L 8344384 8344402 GATAATGGTAGTGGCGGAC 59 8344471 8344876 TCTTGTACTCCTGATTGCC 58 NA Drosophila melanogaster 50 CG13675 FBgn0035845 FBtr0113152 3 1 1 81 3L 8154324 8154342 GATCAGAGCAACTCTACCA 58 8154174 8154280 TGTTGCTGTTGATCATTCAG 58 NA Drosophila melanogaster 50 bip1 FBgn0026263 FBtr0076745 3 1 1 145 3L 8048536 8048991 CATTGAACTTGTTGAGAGCC 59 8048410 8048428 GTAACGAGGCTTCGTAGTC 59 NA Drosophila melanogaster 50 CG10472 FBgn0035670 FBtr0077066 3 1 1 195 3L 6055555 6055574 CATTTCCCTGATCAAGTTGC 59 6054776 6054794 GTTGTTCATGATGGGAACC 58 NA DesignNoJunction Drosophila melanogaster 50 spo FBgn0003486 FBtr0077130 1 1 1 60 3L 5584356 5584375 ACACGATTATCTTCATGCTG 58 5584315 5584333 ACTAGATTTCCAACCGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7509 FBgn0035575 FBtr0073362 3 1 1 99 3L 4803911 4803986 TCGGATAAGTCATATAGATGGC 59 4803833 4803851 TAGATCAGCTGGAATGCTG 59 NA Drosophila melanogaster 50 CG32244 FBgn0052244 FBtr0073325,FBtr0073324 1 2 2 95 3L 4505303 4505412 AAAGTTTGAACAGGTTCGC 59 4505226 4505245 CGGGTAGAGCTCTTTATGAG 59 NA Drosophila melanogaster 50 Rop FBgn0004574 FBtr0073263 2 1 1 60 3L 4138547 4138565 GCGATCTATCTGATTACGC 57 4138505 4138523 TCTCGAAGTCTCGTATCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14998 FBgn0035500 FBtr0073268,FBtr0113135 3 2 6 83 3L 4129782 4130397 ATCGTAAGGAAGATAGCGT 57 4129717 4129735 GTATTGTCGGCATAAGGTC 57 NA Drosophila melanogaster 50 CG14998 FBgn0035500 FBtr0073267,FBtr0073265,FBtr0073268,FBtr0113135,FBtr0073269,FBtr0073266 1 6 6 107 3L 4126918 4126996 TCTCGAGGAGATTAACAAACTC 59 4126832 4126851 GACATAAGGTTTGCAGTTCG 59 NA Drosophila melanogaster 50 CG32263 FBgn0052263 FBtr0073183 2 1 1 60 3L 3810540 3810558 GAAAGAGTTTCGTGGAGTG 58 3810498 3810516 AACATCCATGTGTAGAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF5B FBgn0026259 FBtr0073144 3 1 1 88 3L 3447720 3457231 GCACATCTAAGATTCCTTACTC 58 3447653 3447671 CTCGTGTTCCAACATTGTG 59 NA Drosophila melanogaster 50 CG14961 FBgn0035439 FBtr0073069 1 1 1 60 3L 3331767 3331785 GTGGATGCTAATGGAAACG 58 3331809 3331827 GGATCATCTTGGGTGAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dro3 FBgn0052283 FBtr0073060 1 1 1 63 3L 3315067 3315085 GCTGTAATGACCATTGTCC 58 3315112 3315130 TTCCAGATAGGCAATCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 msn FBgn0010909 FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956 3 5 5 102 3L 2556720 2556800 GCAATAGAGATACGTTCCG 57 2556636 2556654 ATACTTTGTCGTTTCGCTC 58 NA Drosophila melanogaster 50 CG32306 FBgn0052306 FBtr0072894,FBtr0072892,FBtr0072893,FBtr0072895 1 4 4 82 3L 2464050 2464068 TGAAACTACCGCAGATCAC 59 2464114 2464132 GTAGTGATCCATGGACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11814 FBgn0035296 FBtr0072855 2 1 1 80 3L 1951225 1951299 TATGGGATCTCAATGACTGG 58 1951164 1951183 CCACATGTGTTATTGGAGAC 58 NA Drosophila melanogaster 50 CG7991 FBgn0035260 FBtr0072765 3 1 1 177 3L 1712776 1712853 ATTAAGGGATGCCTATTGTCC 59 1712992 1713010 GATCTCCACATAGTCGGAG 58 NA Drosophila melanogaster 50 Ptp61F FBgn0003138 FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718 2 4 4 144 3L 1346060 1346078 AGAAACAGATCAAGTGCCA 59 1345856 1345953 TCGGTTAATTTGAACCATCG 58 NA Drosophila melanogaster 50 CG33965 FBgn0053965 FBtr0100006 3 1 1 112 3L 1233636 1233710 AAATCAAGGAGAGGGTTTCC 59 1233785 1233803 GATATCCTTCATGGTGCCC 59 NA Drosophila melanogaster 50 CG13876 FBgn0035109 FBtr0072484 3 1 1 60 3L 206410 206429 CATTTACGTACTGCTTTCCA 58 206451 206470 GCTCAAATACGTAAAGAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR30066 FBgn0050066 FBtr0087563 2 1 1 60 2R 10177740 10177758 ATTGTTAAAGCCCGGAGAG 59 10177698 10177716 ACTGAATTGGAAACCAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4589 FBgn0019886 FBtr0072347,FBtr0072348,FBtr0072349 3 3 3 82 2R 20398309 20398389 CGATATTCGTAAGGTGTTGGA 59 20398247 20398265 GCAGACTGATGAGTTCCTC 59 NA Drosophila melanogaster 50 CG15874 FBgn0035004 FBtr0072356 3 1 1 85 2R 20319636 20319655 TTTAGGCGCTACTTCTTCAG 59 20319570 20319589 TAACGGATCACATTCGAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slik FBgn0035001 FBtr0072365,FBtr0072363,FBtr0100470,FBtr0072364,FBtr0072366 1 5 5 80 2R 20287854 20287939 TTAGTCAAAGATCCGCAGG 59 20287792 20287810 CTTGGCATCCAGATTTCTG 58 NA Drosophila melanogaster 50 RpL12 FBgn0034968 FBtr0072174,FBtr0072175 1 2 3 144 2R 19948090 19948209 TAAATTGGTGTACCTGCGT 59 19948380 19948398 GATCTTCAGACCCTTCCAG 59 NA Drosophila melanogaster 50 chrw FBgn0015372 FBtr0072120 2 1 1 117 2R 19409666 19409684 CATAAAGAACACGCTGCAC 59 19408475 19409585 AGCTGTATCCCAGATTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 Fib FBgn0003062 FBtr0071982 3 1 1 117 2R 18961145 18961163 CAATGGCGAGAAGATTGAG 58 18961046 18961064 CAGGTAGAGAACCTTCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32834 FBgn0052834 FBtr0071991 3 1 1 60 2R 18871615 18871633 ATCATCACATCAGACACCA 58 18871573 18871591 CAATTGAACCGTAGGACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vps20 FBgn0034744 FBtr0071857,FBtr0071856 1 2 2 279 2R 18496207 18496225 GATCGTCTGAAGCAGTACC 59 18496530 18496548 CGATGTCAAGCATTTCGTG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG3927 FBgn0034739 FBtr0071853 3 1 1 60 2R 18483192 18483213 CAAGTACAACAACCAGATTAGG 58 18483234 18483379 CTCCATATAGGCGACTTCG 59 NA DesignRelaxed Drosophila melanogaster 50 Gp150 FBgn0013272 FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815 2 4 4 82 2R 18213224 18213297 AAGTCCAAGAGCAAATCCA 59 18213341 18213361 TCGTCGTAGTCATATTGAGAG 58 NA Drosophila melanogaster 50 wdp FBgn0034718 FBtr0071849,FBtr0071852,FBtr0071851,FBtr0071850 1 4 4 60 2R 18187225 18187246 CCGTGGAAGAAGATAATATCGT 59 18187186 18187204 GACTCCAGACCAGTATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gom FBgn0029084 FBtr0071766 3 1 1 196 2R 18027914 18027932 AGAATATGAAGCGGAAGCC 59 18028092 18028159 TAGACAGAGGACACCTGAC 59 NA Drosophila melanogaster 50 CG13502 FBgn0034692 FBtr0113103 3 1 2 66 2R 17974262 17974280 AGATCAAGAATGCCAATCC 57 17974052 17974070 GTGCTATTCAGCTCAAGAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG30222 FBgn0050222 FBtr0071655,FBtr0071656 3 2 2 104 2R 17470719 17470737 CTTAGACGCTTTGATGAGC 58 17471237 17471312 ATCGAAGTCAGTGATTCGG 59 NA DesignRelaxed Drosophila melanogaster 50 sktl FBgn0016984 FBtr0071563 2 1 1 60 2R 16716997 16717015 GAACCTATCGCAGAATCCT 58 16716955 16716974 GTGGAAGCAATATAGTCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mus209 FBgn0005655 FBtr0086308,FBtr0086307 3 2 2 63 2R 16149903 16149921 CAACAACGAGGACAATGTG 59 16149858 16149876 GAACATGATGGTGACAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp56g FBgn0034474 FBtr0086343,FBtr0086342 3 2 2 85 2R 15671154 15671174 CGAACTTTAAGGATGTCATCG 59 15671089 15671108 TATCTTGAAGGCAGTGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp56c FBgn0046879 FBtr0086479 2 1 2 60 2R 15588018 15588037 GATCTGAAGCATAATGAGCC 58 15587977 15587995 AATCCAGGGTCTCATACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086450,FBtr0100390,FBtr0100392 3 3 15 102 2R 15361465 15365132 GAGACAAATCTGTTCGATCG 58 15365197 15366252 TTTGACCAGAGTGAAAGGT 58 NA Drosophila melanogaster 50 CG15117 FBgn0034417 FBtr0086594,FBtr0100129,FBtr0086593 2 3 3 113 2R 15010499 15010517 AACCCAGAATGTGATCGAC 59 15010305 15010422 TAAGCAGGTTGCATATGCA 59 NA Drosophila melanogaster 50 CG15107 FBgn0041702 FBtr0086600 3 1 1 137 2R 14859263 14859346 ATTATCTACGAAGTCGCGG 59 14859144 14859162 GGCTATCTTAAAGTGCAGC 58 NA Drosophila melanogaster 50 Jheh1 FBgn0010053 FBtr0086625 1 1 1 85 2R 14742094 14742112 TTCACCACCGATATTCAGG 59 14741973 14741992 GGATAGTGTTTCTTACCCAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG14502 FBgn0034321 FBtr0086756,FBtr0086757 1 2 2 120 2R 14181611 14181629 GAGAATATGCCCTTTCTGG 57 14181806 14181825 AACGGCATAATCTTGTAGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6355 FBgn0028741 FBtr0089554,FBtr0089555 3 2 2 120 2R 13663153 13663233 ATCTGGTTCAGATGTCCTG 58 13663051 13663069 GAATAGTCCATGACGAGGT 58 NA Nonspecific Drosophila melanogaster 50 CG30108 FBgn0050108 FBtr0086837 2 1 1 62 2R 13557116 13557134 GGTTTATCAGGAATGCGTC 58 13557160 13557178 GTTGGTCAAACCATACGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG30106 FBgn0050106 FBtr0086893 3 1 1 119 2R 13538599 13538674 AAGTAACCTGAAGCATCTCG 59 13538499 13538517 TAGTAGACCAGGAAGTGCA 59 NA Drosophila melanogaster 50 ProsMA5 FBgn0016697 FBtr0086911,FBtr0086910 3 2 2 60 2R 13301040 13301058 CGATTTGACTCTCGATGAG 57 13301079 13301100 CTCCATAACCTGTTTAAGTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6805 FBgn0034179 FBtr0086966 3 1 1 60 2R 12893751 12893770 AGACTATCACCAAATCGTGG 59 12893793 12893811 GAATATCCGGCGATATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sema-2a FBgn0011260 FBtr0087089,FBtr0087090,FBtr0087088 2 3 4 81 2R 12415122 12415140 GATGTGATCAACTTGGAGC 58 12415185 12416062 TCTTGCAGTCGAAGATCTG 59 NA Drosophila melanogaster 50 CG7813 FBgn0034133 FBtr0087126 3 1 1 60 2R 12386457 12386476 CTACCGTCAGAATGTGAGAG 59 12386416 12386434 ATACTTGGTCTCGTATCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15711 FBgn0034122 FBtr0087167 1 1 1 60 2R 12251635 12251655 CCAATCTTGAATTGGACAGAG 58 12251595 12251615 CGATCAGATAATCCTCATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33463 FBgn0053463 FBtr0087301 2 1 1 129 2R 11783487 11783579 TTGTCCGTTCAATCATGAC 58 11783376 11783394 GATGCCAGATGTAAACCAG 58 NA Drosophila melanogaster 50 CG30472 FBgn0050472 FBtr0087360 2 1 1 97 2R 11311076 11311094 AACGGTATTCACCACTCTC 58 11310940 11311015 CCTCCAGAGTCAATGATGG 59 NA Drosophila melanogaster 50 igl FBgn0013467 FBtr0087361,FBtr0087362 3 2 2 161 2R 11068192 11068210 CTGAATTCGATCCCAACGA 59 11076379 11076398 AATCTATGTCCAACTCCTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33505 FBgn0053505 FBtr0091445 3 1 1 123 2R 10747045 10747065 CATTTGGAAGATCACAGAGGA 59 10746885 10746960 TAAACCGATTGCTCCATCC 59 NA Drosophila melanogaster 50 CG12869 FBgn0033943 FBtr0087496 1 1 1 163 2R 10480311 10480329 GATCCTGATTCACCTGTCG 59 10480525 10480543 ATCGTAGTTCGTTGATGGG 59 NA DesignNoJunction Drosophila melanogaster 50 shot FBgn0013733 FBtr0087619,FBtr0087617,FBtr0087616,FBtr0087621 2 4 6 80 2R 9787942 9788949 AACTAGATAAACTGCTCGGAG 59 9787882 9787900 GTATAAGTCGTCCTCCAGC 59 NA Drosophila melanogaster 50 CG13333 FBgn0033855 FBtr0087676 3 1 1 64 2R 9443698 9443716 CAACAACTACGACAACCAC 58 9443743 9443762 AATGTTCAGGAGATCAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13331 FBgn0033850 FBtr0087672,FBtr0087673 3 2 2 97 2R 9409561 9409579 CTTCATCCTCGACTACGAG 58 9409835 9409853 GAATCTCGTAGGATTCCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17574 FBgn0033777 FBtr0113079 1 1 4 163 2R 8744204 8744222 TACTATTGCGAGTTCGTCG 59 8737633 8737651 AGTTACGTAGGCATTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13188 FBgn0033668 FBtr0088039,FBtr0088040 3 2 2 117 2R 7849671 7849689 GTCTACGTGAAGAGTACCG 59 7849770 7849894 TCATGTCGAAGAGCTTGAC 59 NA Drosophila melanogaster 50 CG13204 FBgn0033627 FBtr0088129,FBtr0088128 2 2 2 97 2R 7256163 7256184 GATCACATGGATTTCCTAAAGC 59 7256300 7256318 AAATCACACTCTGTGTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG13213 FBgn0033609 FBtr0088180,FBtr0088178,FBtr0088179 1 3 3 80 2R 7174159 7174232 CAGGAAATTATGGACTCACCT 59 7174099 7174118 TATGATGCGGGATTCATCTG 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 1 26 26 80 2R 6421013 6421095 AGTCCCTACTTTGCTACCT 59 6420951 6420970 CTCTTGGTACTTGACATCCT 58 NA Drosophila melanogaster 50 Syb FBgn0003660 FBtr0088362,FBtr0088363 3 2 2 165 2R 6138528 6138546 CAGAAGCTATCGGAACTGG 59 6138089 6138399 ACACCAGAACGATGATGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Syb FBgn0003660 FBtr0088362 2 1 2 126 2R 6138638 6139440 AACAACGAGAACAACAATGC 59 6138531 6138549 GTTCCGATAGCTTCTGGTC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Adam FBgn0027619 FBtr0088387 1 1 1 106 2R 5857043 5857250 GATGAGGACATCAAGGACAG 59 5857319 5857337 TTTAGCGCCTTATTTGGCT 59 NA Drosophila melanogaster 50 cbx FBgn0011241 FBtr0088453,FBtr0088452 2 2 2 229 2R 5752729 5752810 TATGCTAACTCCTTGCAGTG 59 5752465 5752483 CAAAGGTGATCCTCTCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG1623 FBgn0033448 FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487 3 4 4 70 2R 5716115 5716133 GAACTACGAACCCAAGACC 59 5716063 5716082 TATCCGGATACTTGTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trpl FBgn0005614 FBtr0088471,FBtr0088472,FBtr0088473 1 3 3 81 2R 5649774 5650241 CTTCCTGTTCATCTTGATTCTG 59 5650283 5650301 CTTCTTCATCCTGGTCGTC 59 NA Drosophila melanogaster 50 CG13953 FBgn0033416 FBtr0088510 1 1 1 60 2R 5346217 5346235 CAGATCTTCAGTCATCTGC 57 5346257 5346277 AGGCGTCATACTTACTAACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wun FBgn0016078 FBtr0088553,FBtr0088552 2 2 2 185 2R 5291962 5296734 TTTAATCTTGCTCTGCGCT 59 5291414 5291814 ACCTCCACGATGAATATCAC 59 NA Drosophila melanogaster 50 Cyp4p2 FBgn0033395 FBtr0088591 3 1 1 89 2R 5126845 5126864 CGATTCCTACCTCAGAACTG 59 5126916 5127006 GTACTTCTGGCCTATGCAG 59 NA Drosophila melanogaster 50 CG14744 FBgn0033324 FBtr0113056 1 1 1 106 2R 4596208 4596226 CACTCTGCGAGATCTACTG 59 4596064 4596141 TTAAGAAGAGCACTATACCCTC 58 NA Drosophila melanogaster 50 CG11669 FBgn0033296 FBtr0088757 3 1 1 60 2R 4358555 4358577 GTCAACAGTACTACCTACATCAG 59 4358517 4358538 GGATTTCGGTAGTTAAGATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8708 FBgn0033271 FBtr0088809,FBtr0088808 2 2 2 60 2R 4048018 4048036 GAGAATCTATGGGCCAAGG 59 4047976 4047997 CGTTATAGTGGTGATGATAGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2915 FBgn0033241 FBtr0088879,FBtr0088878 1 2 2 60 2R 3847153 3847172 CGCAATGGTTAGTCATTCTG 59 3847112 3847131 CCACTGTCCAAGTTAGTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lin19 FBgn0015509 FBtr0088845,FBtr0088847,FBtr0088848,FBtr0088846 1 4 4 93 2R 3806337 3806416 GCGAAGAGGTTCTTATCGA 59 3806473 3806491 ATCCGTTTCAGATCATCGT 58 NA Drosophila melanogaster 50 didum FBgn0015933 FBtr0089745,FBtr0089743 2 2 3 117 2R 3394087 3394172 TGTATTCGATACACCGATCTG 59 3394251 3394269 TAACACGATTCTCGATCGG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111102,FBtr0111095 1 2 60 97 2R 3236476 3243204 GTGCCCTTCTATAGATGGT 58 3236397 3236415 ATGAGAGTACCAGAGACCT 58 NA Drosophila melanogaster 50 CG12842 FBgn0033131 FBtr0089029 1 1 1 61 2R 2927055 2927075 TATCCTTGTTATCTGTGCACC 59 2927098 2927116 CCAATGTGCACATTCAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp42Ea FBgn0029508 FBtr0086172,FBtr0086171,FBtr0086173 1 3 3 101 2R 2884280 2884299 GTAACGATGATCATCCTGGG 59 2884363 2884444 GATCGAGTACGTCATGGAC 59 NA Drosophila melanogaster 50 CG15909 FBgn0033090 FBtr0086122 3 1 1 60 2R 2570869 2570887 CAAGTCAAGACTCACAGCT 59 2570911 2570929 CACGACCTCATTATAGGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17510 FBgn0039969 FBtr0086073,FBtr0086074 3 2 2 100 2R 1491755 1491774 CAAATGATCAAGTTCGCTCC 59 1491443 1491461 AAGTACTAAAGCTGCTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33347 FBgn0053347 FBtr0086090 1 1 1 92 2R 1243077 1243095 ATTTGCGTAAAGAGGACCA 59 1243151 1243169 CACAGGTGCCATAATAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gus FBgn0026238 FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753 1 6 6 61 2R 1005304 1008282 TTGGTGGATTAGATCCCGA 59 1005261 1005279 TTGACGAATTGTTCTTCGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG41448 FBgn0084012 FBtr0111271 3 1 1 97 2R 562707 562725 ATACGTCGAGAAGTTCGAG 58 562435 562453 CTTGTAAACCTCACGTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17683 FBgn0040002 FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300 2 4 5 80 2R 19470 19547 GTGTAATCACTTCAGTTGAGG 58 19586 19607 CTAAATCAAGGAGATCGTACTG 58 NA Drosophila melanogaster 50 snRNA:U4:25F FBgn0041719 FBtr0079108 3 1 1 77 2L 5565649 5565667 TGAAGTTCCAACTGAGCTG 59 5565708 5565726 GATCGTAGATCCTTACGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34137 FBgn0083973 FBtr0110947 3 1 1 60 2L 22151847 22151867 CAGTACCTAAACCTCAATTCG 58 22151889 22151907 CGTTTAATGTAACGGTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1428 FBgn0032967 FBtr0085929 2 1 1 60 2L 21906438 21906458 CAGAGTGGTTTGAAAGAAAGG 59 21906478 21906498 GTGTTCACAAAGACTACTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31619 FBgn0051619 FBtr0110959,FBtr0085901,FBtr0085902 2 3 3 118 2L 21712957 21713036 ACTTAACGAACGATCGGAG 59 21713117 21713136 CATCATCTGTATCCTGTCCC 59 NA Drosophila melanogaster 50 CG9248 FBgn0032923 FBtr0081470 1 1 2 173 2L 21159050 21159068 GGAGAACGCAAATAGAACC 58 21159279 21159297 TTGTACTGATGCAGTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 E2f2 FBgn0024371 FBtr0081501 3 1 1 80 2L 21154975 21155114 GTAATCATTACGAGCTGGC 58 21154913 21154931 TACTCTTTCCTTGGTTCGT 58 NA Drosophila melanogaster 50 Pomp FBgn0032884 FBtr0081414 3 1 1 118 2L 20788404 20788422 AACTTCATGGACGATGTCC 59 20788504 20788522 AGAGATTTCTCCACCACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lar FBgn0000464 FBtr0081260,FBtr0112800 1 2 2 80 2L 19729578 19729598 CGCTATCAGTATTATGTCGTG 58 19729639 19729728 ATCCGTGACCTTAAATTCAC 57 NA Drosophila melanogaster 50 CG10641 FBgn0032731 FBtr0081185 2 1 1 60 2L 18986734 18986752 CTACAAAGTGGTCAACGTC 58 18986692 18986710 GTCCTTGATCTGGTTACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10348 FBgn0032707 FBtr0081124 3 1 1 72 2L 18714898 18714916 CTTACCTCCAAGCTCTTCC 59 18714844 18714864 CCTTGATAGATGTTGTTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10343 FBgn0032703 FBtr0081098 3 1 1 110 2L 18703827 18703918 AATAGGAATCTACTGCCAGC 59 18703991 18704009 CTTAAGGCATTCGAACAGG 58 NA Drosophila melanogaster 50 Oli FBgn0032651 FBtr0080986 2 1 1 60 2L 17590624 17590644 GTAAGGCTGAACATAAATGCC 59 17590665 17590684 CAAGGGCATCATTCAAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18563 FBgn0032639 FBtr0081003 3 1 1 60 2L 17457464 17457485 CAATACGACTGGTCTATATTCC 57 17457425 17457444 GGTCAAGTAAACTTCTTCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31804 FBgn0051804 FBtr0080967 3 1 1 61 2L 17363798 17363816 TCGAAAGCTAGTCAAGACC 59 17363841 17363859 CTTTGCTTCTGTGGTTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31806 FBgn0051806 FBtr0080952 2 1 1 82 2L 16985305 16985323 CTTAAACGAAGTCATGCCA 58 16985369 16985387 CTTCCTCAACCAGGATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ugt36Bc FBgn0040260 FBtr0080911,FBtr0080912 2 2 2 134 2L 16800512 16800610 GTTCTATGACCGTCTTTGGA 59 16800707 16800725 ATTACTCCAGGCACATTCG 59 NA Drosophila melanogaster 50 CG13277 FBgn0032599 FBtr0080934 3 1 1 61 2L 16742956 16742974 AATGACGGTAAGGAGAAGC 59 16742913 16742932 TTCTCCAAGTACTTGGAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyt-c-p FBgn0000409 FBtr0080889 2 1 1 230 2L 16722155 16722173 AATCTGCATGGTCTGATCG 59 16722367 16722385 ACAGCACCATTACTTGGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 dac FBgn0005677 FBtr0080879,FBtr0080876 3 2 7 155 2L 16475427 16481538 AAGCCACCAGAAAGTAACTC 59 16475291 16475309 TTCATAGGCATAATCGCCG 59 NA Drosophila melanogaster 50 Ca-alpha1D FBgn0001991 FBtr0090003 1 1 4 123 2L 16185512 16185530 GAGAGCTAAGGACATTCGG 59 16185614 16189033 GTGCGTAGATCATAGTTAATGG 58 NA Drosophila melanogaster 50 CG15256 FBgn0028880 FBtr0080751 3 1 1 136 2L 15555022 15559594 TTGCACAAGTTGATCAACG 59 15559692 15559712 TAGTTAGTCATGAGGACATCC 58 NA Drosophila melanogaster 50 mTTF FBgn0028530 FBtr0080641 2 1 1 93 2L 14347586 14347660 TTACCAAGATCAAAGAGGTG 57 14347512 14347530 CTGTGGCATAGAATTCGAG 57 NA Drosophila melanogaster 50 CG31763 FBgn0051763 FBtr0080356 3 1 1 77 2L 12374034 12374052 ATGGCCATCAGTTGTATCC 59 12374093 12374111 CTGGAACTAAATATGGCGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14932 FBgn0032375 FBtr0080257 3 1 1 60 2L 11790650 11790668 TATCAGAGTCCATTGGAGC 58 11790692 11790710 ATGAATGGTTCCAAGTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31705 FBgn0028490 FBtr0080244,FBtr0080243,FBtr0080242 2 3 3 77 2L 11524601 11524620 AGCTGTTTACTATCCACAGG 59 11524475 11524493 AATGCTCCAGCGATAAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4705 FBgn0032339 FBtr0080196 1 1 2 117 2L 11092482 11092560 CGAGATACACGCCTATTGG 59 11092641 11092659 AAGGAACAAATAGGGTCCG 59 NA Drosophila melanogaster 50 Ast-C FBgn0032336 FBtr0080234 2 1 1 67 2L 11076957 11076975 ATATTCCAATGGATCGGCT 58 11076846 11076864 CAAATAGGCGCTGTAACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6724 FBgn0032298 FBtr0080191 1 1 1 60 2L 10768644 10768665 CTCTATGATCCTAGGACAAACC 59 10768538 10768556 CATTGTGTCCCAGATAGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG6737 FBgn0032294 FBtr0080120 3 1 1 65 2L 10736454 10736473 TCTTTATCGGCATGATCCTG 59 10736408 10736426 CAATGATCAGGCCGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17098 FBgn0032276 FBtr0080103 3 1 1 60 2L 10652781 10652801 GTCGCTAATAAGATACGACCT 59 10652822 10652841 AACCACTGATAGGATAACCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5375 FBgn0032221 FBtr0113033,FBtr0080058 3 2 2 174 2L 10328735 10328818 CAGATGAAAGTAAAGGCAAGG 59 10328581 10328600 ATTCCTGGAGATTGTTGACC 59 NA Drosophila melanogaster 50 CG31873 FBgn0032206 FBtr0079986 1 1 1 78 2L 10270370 10270388 CAACAAGAAGAGATCGGAG 57 10270484 10270502 GATCTCCACCGAATATCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG4619 FBgn0032166 FBtr0079883 2 1 1 60 2L 9940281 9940299 AAAGAGTTTGATGGAGCAC 57 9940323 9940341 CGTATTTCGTCAAGTCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31878 FBgn0051878 FBtr0079881 1 1 2 97 2L 9930317 9930614 GTCTCGAGTTTACAACTCCA 59 9930787 9930805 CATATTGGGCAGGACTAGC 59 NA Drosophila melanogaster 50 nAcRalpha-30D FBgn0032151 FBtr0079913 2 1 6 96 2L 9825637 9825655 GGAGGTTAAGTTCGGACTG 59 9819323 9825309 CTTCTCGTCCAAATTTAACCAC 59 NA Drosophila melanogaster 50 CG18854 FBgn0042174 FBtr0079919,FBtr0079920,FBtr0079918 2 3 3 81 2L 9789414 9789432 GCCTCTACTGACAGATGAC 59 9789291 9789371 AACTATTAGGCAGAGGTTTGG 59 NA Drosophila melanogaster 50 CG18854 FBgn0042174 FBtr0079919,FBtr0079920,FBtr0079918 1 3 3 80 2L 9789414 9789432 GCCTCTACTGACAGATGAC 59 9789292 9789371 ACTATTAGGCAGAGGTTTGG 59 NA Drosophila melanogaster 50 Or30a FBgn0032096 FBtr0079770 2 1 1 81 2L 9112306 9112377 TGGTTCGGAAAGAGTTCTG 59 9112420 9112440 AATCTCGTAGTAAGGTGATGC 59 NA Drosophila melanogaster 50 CG9465 FBgn0032067 FBtr0079743 3 1 1 144 2L 8770527 8770545 AAGGCAACGGTAAATAAGG 57 8770338 8770420 TCACTAGTTTAACAACCGAG 57 NA Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079620,FBtr0079621 2 2 4 90 2L 8245213 8252237 CAGATACCAGCTCCTAATGTC 59 8245143 8245161 TAATCGTATAAGCCGGAGC 59 NA Drosophila melanogaster 50 Pvr FBgn0032006 FBtr0079625,FBtr0079627 3 2 6 111 2L 8228251 8228505 AGTAATGGAGAAAGCACGT 58 8228158 8228176 TGACTCGAAAGGTAAAGCC 59 NA Drosophila melanogaster 50 CG8372 FBgn0032000 FBtr0079634,FBtr0079633 3 2 2 62 2L 8212168 8212186 TTATTAAGACCTGGCTGCC 59 8212124 8212142 AATAGATGCCCAGAATGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34134 FBgn0083970 FBtr0110894 1 1 1 68 2L 8190457 8190475 AGTTCAATCGTCAAGGGAG 59 8190407 8190425 TATAGTGGGTGAACCTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31906 FBgn0051906 FBtr0079412 3 1 1 64 2L 7225672 7225690 AGCAGATCAACAAGGATGG 59 7225626 7225644 GACTTTAAGGGTGACTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31630 FBgn0051630 FBtr0079400 2 1 1 62 2L 7046481 7046499 CAAGAAGCTAGACTCCCTG 59 7046525 7046543 AAGGTTTGCCCATAATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 xl6 FBgn0028554 FBtr0079368 2 1 1 64 2L 6919906 6919924 GATAGAAAGGTGTACGTGG 57 6919860 6919878 AATACATACTCCAGGTCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11043 FBgn0031831 FBtr0079289 3 1 1 61 2L 6559637 6559655 TAGGTTTACAGTGGCAAGG 59 6559680 6559698 CTGAGTTGTGGATATGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11034 FBgn0031741 FBtr0079140 2 1 1 113 2L 5808398 5808478 ATGGCTGTACTATGATACGA 57 5808554 5808572 TTGAAGTTCTCCAAGTTGC 58 NA Drosophila melanogaster 50 CG11149 FBgn0031732 FBtr0079168,FBtr0079169 2 2 2 152 2L 5719427 5719525 AATGGTGGTATCACGTTGG 59 5719293 5719312 AAGTACACGTGAAAGGAGAC 59 NA Drosophila melanogaster 50 CG31650 FBgn0031673 FBtr0079034,FBtr0079035,FBtr0079033 2 3 3 88 2L 5041718 5041737 AATTTATTGACCGGCATGAG 58 5041500 5041518 TTCTTCAAATCGATCAGCG 58 NA DesignNoJunction Drosophila melanogaster 50 hoe1 FBgn0041150 FBtr0077395,FBtr0077398,FBtr0077397,FBtr0077399,FBtr0077400,FBtr0077396 2 6 6 106 2L 4909615 4909687 CATTCTATGGGTTTCCGCT 59 4909527 4909546 GATTCAAGGTGCTATTCTGC 58 NA Drosophila melanogaster 50 CG15631 FBgn0031626 FBtr0077419 1 1 1 60 2L 4732596 4732615 TGGAAGTCAGTTACACTCAG 58 4732555 4732574 CATTTCTGTCTGCATATCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34176 FBgn0085205 FBtr0112367 3 1 1 196 2L 4004181 4004199 ACCCGTGATTAAGGTACAG 58 4004359 4004377 ACTGTGGATTGTGGTAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 for FBgn0000721 FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305 2 4 10 180 2L 3626210 3634251 TATGTCATGGAAGATGGACG 59 3626049 3626067 TGATGGTCTGAAAGCACTG 59 NA Drosophila melanogaster 50 for FBgn0000721 FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305 3 4 10 181 2L 3626210 3634252 TTATGTCATGGAAGATGGACG 59 3626049 3626067 TGATGGTCTGAAAGCACTG 59 NA Drosophila melanogaster 50 CG8852 FBgn0031548 FBtr0089937 2 1 1 60 2L 3525319 3525338 CGAATCAATATCGTTGCCAC 59 3525359 3525379 CGAAGATGTCTTATAGAGCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8851 FBgn0031546 FBtr0077526,FBtr0077527 2 2 2 60 2L 3520451 3520472 GGAACATCATCTAGTAACACCT 59 3520493 3520511 CTTCGTTCTTCTCATCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tim FBgn0014396 FBtr0114526,FBtr0077564,FBtr0077567,FBtr0114527,FBtr0077566 2 5 8 80 2L 3500054 3500072 CCAGAATTCCGGACTACTG 59 3499755 3500010 TGAGGTTGAGTTTGTCCAG 59 NA Drosophila melanogaster 50 CG31698 FBgn0051698 FBtr0077612 3 1 1 60 2L 3173357 3173376 AGGGCATGAATTACAAATGC 59 3173316 3173335 AACCGTTTAGGACAATACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hrs FBgn0031450 FBtr0089751,FBtr0089749,FBtr0089750 1 3 3 213 2L 2741450 2741468 TATCTGAACAGCACTTTGG 57 2741721 2741739 GATACTCCTTGGGTTCTGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 dpp FBgn0000490 FBtr0077774,FBtr0077772,FBtr0077775,FBtr0077771,FBtr0077773 3 5 5 79 2L 2458417 2458435 AATATGAATCCCGGCAAGG 59 2458478 2458496 TCGTTGAGATAGAGCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9886 FBgn0031428 FBtr0077770 3 1 1 74 2L 2421849 2421867 CTATCAGAGATTGCTGCAC 57 2421905 2421923 TACTTCTCCCTGAGTTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17237 FBgn0031410 FBtr0077801 3 1 1 62 2L 2288676 2288694 GGTAGGATCAACAAAGACG 57 2288632 2288653 CCCATAGATAATGTCTTGAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10882 FBgn0031408 FBtr0077810 1 1 1 80 2L 2234288 2234306 GTGGACAAGCATGAAAGAC 59 2233969 2234247 AGTATTGTTCCGACAGTAATCC 59 NA Drosophila melanogaster 50 CG17652 FBgn0031361 FBtr0077904 2 1 1 166 2L 1732014 1732032 GTTAAGCTACTGACCACCC 59 1731803 1731884 CGATTGTCTTTGGTCATCG 58 NA Drosophila melanogaster 50 a5 FBgn0011294 FBtr0077922 2 1 1 60 2L 1329604 1329622 ATATCGGAGTACTTCGGTC 57 1329643 1329664 GAATAAGATACCGCTGAATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3662 FBgn0031285 FBtr0100469,FBtr0078012 1 2 2 98 2L 823320 823338 ATTATCGACACTACCACCG 58 823397 823418 GCTCATCTTCTTTATGAGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gsc FBgn0010323 FBtr0114568,FBtr0078072 1 2 2 224 2L 584441 592285 AAGAACGAGTTGAGGTGTG 59 584235 584253 TCTTGATGTGCACTAGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 kis FBgn0086902 FBtr0078144,FBtr0078145 2 2 2 106 2L 216569 216647 CTTAACAGTTCTACAATGGCG 59 216483 216501 GAAGCAGAAGAATTGCCAC 59 NA Drosophila melanogaster 50 CG3709 FBgn0031227 FBtr0078147 1 1 1 60 2L 154106 154126 TCTATACATCACCTCCAAGTC 58 154066 154084 CTTCTCCCGTCTTTATGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mer FBgn0086384 FBtr0074754 1 1 1 79 X 19585952 19586067 ATGATTCTTGACCTGTGCA 59 19585891 19585909 ATCTGCTGGATTTCCATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14219 FBgn0031033 FBtr0074769 1 1 1 80 X 19482997 19483018 CTACGGTCATGACTATATGGTG 59 19482880 19482958 TAGAATGAGTTGATCCACGTC 59 NA Drosophila melanogaster 50 CG6961 FBgn0030959 FBtr0074660 2 1 1 237 X 18681362 18681439 TCGAGGATGAGGAAATATCTC 58 18681145 18681163 TCCTTGGTGCTATTTGAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG15043 FBgn0030929 FBtr0074626 2 1 1 60 X 18387763 18387782 CAACACTTACGAATTCCCAC 59 18387722 18387740 GTTCTCCGGATAGGTAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074573,FBtr0074572,FBtr0074575,FBtr0074574,FBtr0074571,FBtr0074570 2 6 6 112 X 18285991 18286082 CACCACTCAGAATATGGCT 59 18285897 18285915 TATAGTCGCTGTTGGTCAG 58 NA Drosophila melanogaster 50 CG6398 FBgn0030870 FBtr0074462 1 1 1 83 X 17734949 17735029 ACCTGATGCCAGTTTACTC 59 17735076 17735094 AAGGTCCTGGGTAGATCTG 59 NA Drosophila melanogaster 50 CG12433 FBgn0030811 FBtr0074379 2 1 1 68 X 16917243 16917261 AACGATACGAGGATTACGA 57 16917292 16917646 TATTTCGCTCGATCTCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8958 FBgn0030725 FBtr0074207 2 1 1 80 X 15977987 15978005 GAGATTGTTTCGGAGACGT 59 15978047 15978121 AAACTTCACAACTAGACAGGG 59 NA Drosophila melanogaster 50 CG15599 FBgn0030667 FBtr0074061 2 1 1 80 X 15579270 15579612 CTAAATCGAGATGTGGAACAG 58 15579210 15579229 TAATAACTTCGCCAGGACTG 59 NA Drosophila melanogaster 50 CG8117 FBgn0030663 FBtr0074050 1 1 1 63 X 15538637 15538655 TTCAGGACTCGATCAATGC 59 15538682 15538700 TTGAACTGATCCGTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18210 FBgn0030636 FBtr0074081 1 1 1 83 X 15334555 15334573 AAAGGATGAAGGACTGCTG 59 15314733 15315620 TATTTATGCTGCGTAGCTG 57 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG14410 FBgn0030583 FBtr0073948 1 1 1 60 X 14731077 14731097 ATGAGTATCCCAATGAAGAGC 59 14731119 14731137 TGAGCGGGATTTCTAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32633 FBgn0052633 FBtr0073800 3 1 1 91 X 13456207 13456225 CTACAACTACGAGTGGCTG 59 13456280 13456298 CATACAAATACTCGCCGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15721 FBgn0030438 FBtr0073715 2 1 1 160 X 12867626 12867645 AATACAACGTTTGCAACGAC 59 12867766 12868493 CCAATCATTCTGCTTTCTGTC 59 NA Drosophila melanogaster 50 Sk1 FBgn0030300 FBtr0073497,FBtr0073498 3 2 2 60 X 11339337 11339355 ATCTACCTGGTGATCATCC 57 11339379 11339397 TCAGCATGAAATTGAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1637 FBgn0030245 FBtr0073407 2 1 3 82 X 10765489 10765571 AGGAGAAGTACAACTTCTCC 58 10765426 10765444 CAAGTTGAAGCTGTACCAC 58 NA Drosophila melanogaster 50 Aats-lys FBgn0027084 FBtr0071367,FBtr0071366 1 2 2 70 X 9501701 9501721 CGCTATCTTGATCTCATTCTC 58 9501590 9501669 TACGAGATGATCTTGGCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG10555 FBgn0030034 FBtr0071174 1 1 1 242 X 8294673 8294691 TTCAGTCCGTCATCAATCC 59 8295173 8295191 GTTGCTGTTGATAGCTGAC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG18155 FBgn0029945 FBtr0071051 2 1 1 233 X 7223254 7223355 CCGAATTGATACATAAGGATGG 58 7223632 7223650 ATGTTACATTCGAAAGCGC 59 NA DesignNoJunction Drosophila melanogaster 50 Top3beta FBgn0026015 FBtr0070930 2 1 1 184 X 6179392 6179475 AGTACATACAGACCAAACCG 59 6179227 6179245 ATGGTTGTAACAGTACGGG 59 NA Drosophila melanogaster 50 CG2861 FBgn0029728 FBtr0070732 1 1 2 130 X 4697639 4697729 ATATCCGGATCCAATTTCCA 58 4697467 4697549 CCTTGATTTCCCTATTATTCGC 59 NA Drosophila melanogaster 50 CG2681 FBgn0024997 FBtr0070480 2 1 1 157 X 2604927 2605016 AGGACAAGGTTCTTCATTACC 59 2605134 2605153 CGTAATGATCATGTTGGTCG 59 NA Drosophila melanogaster 50 deltaCOP FBgn0028969 FBtr0070371 2 1 1 165 X 1754593 1754611 AAGGACGTCGATAGTTTCG 59 1754390 1754464 TCTTCAGATGTACGCTCTC 58 NA Drosophila melanogaster 50 eIF4E-7 FBgn0040368 FBtr0070252 1 1 1 60 X 1053973 1053994 CCTCAATCCACTGAAGATACTC 59 1053934 1053953 TGTTTGGATCATTCATCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16989 FBgn0025621 FBtr0070140 3 1 1 60 X 689438 689456 GGATCTTGGATTTGTGGAG 57 689478 689498 CTGGGAATCACCTAAGATACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 su(s) FBgn0003575 FBtr0070120 2 1 1 109 X 532744 532824 CCATTAGAAGATGACCATGCT 59 532894 532913 GTATCCTGGTTAGACGAACG 59 NA Drosophila melanogaster 50 CG40856 FBgn0085526 FBtr0113939 1 1 1 73 U 9226990 9227008 CGACGTTGAATTATCCGTC 58 9227045 9227063 ATAAATCTACCGCTGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40968 FBgn0085546 FBtr0113959 2 1 1 180 U 6307508 6307641 AATTAATCCCGAAAGCGAG 57 6307785 6307803 TTGTTCTAGGGCATTAAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17691 FBgn0039993 FBtr0113759,FBtr0113758,FBtr0113761 2 3 4 72 U 1179199 1179274 CGGTGTTCAGTAAATCTACG 58 1179309 1179327 TTCCTTGCTCACATAAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41053 FBgn0069960 FBtr0113978 3 1 1 60 U 641286 641306 GTTGACCAGTGGATAAATGAG 58 641246 641264 CCGTACTACTTGTTGAACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pncr013:4 FBgn0041005 FBtr0091952 2 1 1 136 4 488184 488204 GTTCTAGTCGAGTATTCACAC 57 488301 488377 GACATATACCCAACACATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syt7 FBgn0039900 FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0089139,FBtr0114475 1 6 6 112 4 302426 302444 CTCCTCCCTTTGCTATCAC 59 301146 302352 ACACCTTTACGTATGGATCAG 59 NA Drosophila melanogaster 50 CG34347 FBgn0085376 FBtr0112556 1 1 1 80 3R 27186210 27186229 TACGAATGGTAGTGGATCTG 58 27186270 27186403 GTGCTTTGATAGTAAAGTCCC 58 NA Drosophila melanogaster 50 bnk FBgn0004389 FBtr0085754 1 1 1 166 3R 27019409 27019427 GTCCAAGCGAAATAATGGC 59 27019557 27019575 ACTCAAAGGTGTTGGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31012 FBgn0027598 FBtr0085704,FBtr0085706,FBtr0085707,FBtr0085705 1 4 4 135 3R 26650595 26650683 AGTTCCTATGACTGGTAACCT 59 26650778 26650798 TTCAGGTAGTTGATTAGCACC 59 NA Drosophila melanogaster 50 CG18404 FBgn0039761 FBtr0085618 3 1 1 91 3R 26079306 26079393 GATTTGGCTAATGCCATTACC 59 26079502 26079523 GCTATAATAGAAGCACCATTGG 58 NA Drosophila melanogaster 50 RpS7 FBgn0039757 FBtr0089423,FBtr0089425,FBtr0089422 2 3 4 90 3R 26032436 26033825 TTGAACACAAAGTCGACAC 58 26032364 26032382 ACATTCAGGTAGTTGTCGG 59 NA Nonspecific Drosophila melanogaster 50 CG31427 FBgn0051427 FBtr0113407,FBtr0113406 1 2 2 112 3R 25065062 25065137 GGCAAAGATGATTTCCTTCC 59 25064969 25064987 TTGCGAATACCTTCCTTGG 59 NA InUTR Drosophila melanogaster 50 CG13978 FBgn0039518 FBtr0085182 2 1 1 103 3R 23290662 23290680 GCGTGGTATTAGGAATACG 57 23290744 23290815 GTGCTCCTTCATTATTCATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11902 FBgn0028647 FBtr0084831 3 1 1 80 3R 21161709 21161728 AAGTCGTATCATCTACGTCG 59 21161769 21161840 TTCAGATGGCTTACATTCCTC 59 NA Drosophila melanogaster 50 CG10559 FBgn0039323 FBtr0084854 2 1 1 96 3R 21140548 21140664 AATATGGACGAGTTGTGCT 58 21140470 21140490 ATAGCCAACTTTAGACCATCG 59 NA Drosophila melanogaster 50 CG31300 FBgn0051300 FBtr0084824 2 1 1 117 3R 21110521 21110540 AAACTCTGGGATGAAATCCA 58 21110690 21110708 CCTGTATAAGGTCGTTCAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6980 FBgn0039228 FBtr0084698 2 1 1 82 3R 20633974 20634065 TGTGCTACATCAAGCTACAG 59 20634110 20634128 GAGATTACTCTCCTGCAGC 59 NA Drosophila melanogaster 50 Gdh FBgn0001098 FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498 3 4 4 98 3R 19763339 19763461 AAGCTAAGATCATTGCCGA 59 19763259 19763277 TGTACAGATCGGGAATGAC 58 NA Drosophila melanogaster 50 CG18754 FBgn0042106 FBtr0084439 3 1 1 285 3R 19510411 19510905 AATCGGCTATCCTTGATTCG 59 19511217 19511236 CCAATAGACAAATGGGTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG10170 FBgn0039085 FBtr0084420 1 1 1 80 3R 19360113 19360190 GTCCAGGAAATGATCGAGG 59 19360051 19360069 CATTGACACAACCATCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 EloA FBgn0039066 FBtr0084375,FBtr0084374 2 2 2 87 3R 19079414 19079489 GATGCATTGGAGTATACGG 57 19079540 19079558 CAAAGTTAAGCAGCTGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17141 FBgn0039020 FBtr0084322 3 1 1 60 3R 18572546 18572567 CATTAAGGATGATGAAATGGGC 59 18572507 18572525 AATATGATCGGGAAGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15497 FBgn0038894 FBtr0084113 3 1 1 117 3R 17491845 17491982 CTCTACGATTACAGTCAAACCA 59 17492060 17492078 GCAAGTTCTCAATGTGCAG 59 NA Drosophila melanogaster 50 cic FBgn0028386 FBtr0112787,FBtr0083872 3 2 2 102 3R 16124247 16124328 CTCATCCGTATACGTTGCT 59 16124394 16124412 TTCCTCAAGGTGTAACCTC 58 NA Drosophila melanogaster 50 CG11779 FBgn0038683 FBtr0100548 2 1 4 219 3R 14981029 14981047 GATTATCACGTTCCAAGCC 58 14975339 14977213 AATCGTCGGAAGTATCCTC 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG18598 FBgn0038589 FBtr0083569 3 1 1 120 3R 14076898 14076917 AGGTTTGGACAACTACAAGG 59 14077000 14077083 CTTGTCCTTTAGCAGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17802 FBgn0038549 FBtr0083526 1 1 1 107 3R 13629369 13629587 GTAACTTCCACTGTGAGGTC 59 13629281 13629299 TAGCACTCATTGCGATCAG 59 NA Drosophila melanogaster 50 beat-IIa FBgn0038498 FBtr0083453 1 1 1 129 3R 13153083 13156752 ATGCAAGTTGTTGAACTGC 59 13152972 13152990 TAAATGTGAGTTCTGCCCG 59 NA Drosophila melanogaster 50 CG14891 FBgn0038445 FBtr0083302,FBtr0083301 3 2 2 60 3R 12397906 12397924 AATTTCTGTCAGCCTAGCC 59 12397947 12397966 ATTAATCAACCCATTGGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rdx FBgn0086364 FBtr0082872,FBtr0082871,FBtr0082874,FBtr0100852,FBtr0100361 2 5 5 91 3R 9796061 9796079 AAATCAGAAGTCAGAGCCA 58 9795915 9796006 AAACGATAAGCTCTTTGGG 57 NA Drosophila melanogaster 50 primo-2 FBgn0040076 FBtr0091746,FBtr0091745 1 2 2 150 3R 9537064 9537082 ATTCGACTACATCTTCGCC 59 9536741 9536953 ACCAATGTCATAATAGGGATCC 59 NA Nonspecific Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082801,FBtr0082806 2 2 8 98 3R 9488126 9488710 AATCATCCTCTCGTTATGGC 59 9488770 9491190 TGTAATCCTTGAGATCCTGC 59 NA Drosophila melanogaster 50 Hrb87F FBgn0004237 FBtr0082852,FBtr0082851 2 2 2 160 3R 9484012 9484197 CGTTACTAGACAAGGTAAACAC 58 9483873 9483891 GTTCTGATCTTGTCTGCCT 59 NA InUTR Drosophila melanogaster 50 CtBP FBgn0020496 FBtr0082701,FBtr0082702,FBtr0082699,FBtr0082700,FBtr0100161 1 5 5 80 3R 8845522 8845621 GAAATACACGAGAAGGTCC 57 8845665 8845683 CTCAAGATCCTCCTTTGTC 57 NA Drosophila melanogaster 50 Cyp304a1 FBgn0038095 FBtr0082691 2 1 1 150 3R 8789869 8789889 CGAGATCCTCAATAATCAGGT 59 8790291 8790309 GTCTCTTAAGTAGCGCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Octbeta3R FBgn0053959 FBtr0099995,FBtr0099997,FBtr0099998,FBtr0099996,FBtr0099999 2 5 5 80 3R 8338734 8338872 TTTCTGTGGTATGTCATCAC 57 8338673 8338691 GATCCAGAATAACACCACC 57 NA Drosophila melanogaster 50 CG14710 FBgn0037920 FBtr0082415 3 1 1 94 3R 7446856 7446936 CCACCAATGCGAAATATGC 59 7446994 7447012 TACACTTGTATGGACGGTC 58 NA DesignRelaxed Drosophila melanogaster 50 Irbp FBgn0011774 FBtr0082385 3 1 1 77 3R 7236527 7236790 CAAGAGCTATCGAACTGGA 58 7236831 7236849 TCAACTTACGATCGGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4683 FBgn0037857 FBtr0082326 1 1 1 80 3R 6776475 6776493 AGATCCTGGTAGTGTATCC 57 6776537 6776609 GTCATCTTCGATATTGCGT 57 NA Drosophila melanogaster 50 CG14684 FBgn0037824 FBtr0082268 1 1 1 60 3R 6532762 6532780 AATTTATTCTGCGCACTGC 59 6532804 6532822 TTATACTGCTCTCGCAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6325 FBgn0037814 FBtr0082260 1 1 1 80 3R 6230154 6230173 CAAAGAAGCTAAGAAGACGC 59 6230029 6230111 GTGATATGCAGTCGTCCTC 59 NA Drosophila melanogaster 50 CG9471 FBgn0037749 FBtr0113211 2 1 2 80 3R 5597058 5597076 TATTATTGGAGGAACCGGC 59 5596941 5596960 TATAGCAATTTCACCGACAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG31415 FBgn0051415 FBtr0082127 1 1 1 175 3R 5569842 5569860 CAACAACCCTGATTCTTGC 59 5569999 5570017 CCTTACCGCATTTATTGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Scm FBgn0003334 FBtr0082102 1 1 1 80 3R 5460307 5460325 GGTGATCCAGTACATCGAG 59 5460184 5460263 TTACCATCGATTTCGTGCT 59 NA Drosophila melanogaster 50 RpL34b FBgn0037686 FBtr0082050 1 1 2 94 3R 5226835 5226853 ATATACCACCAAATGCAGC 57 5226759 5226777 GATTCGTGGGTTACATGTG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG8202 FBgn0037622 FBtr0081914 1 1 1 80 3R 4558373 4558391 GAAGCTATCGCTGTCTACC 59 4558435 4558503 ACCGTTTGTGCTTTAATGC 59 NA Drosophila melanogaster 50 CG18744 FBgn0042101 FBtr0114516 2 1 1 60 3R 3623019 3623100 ATCTTTGGCTTCGAATTTCC 58 3622978 3622997 GGTCTTATTCAGATTGGTGG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG18746 FBgn0042103 FBtr0081775 1 1 1 84 3R 3615385 3615467 CTAGTTCCAGCATAGAGGTG 59 3615320 3615338 GAAGAGGGACATGTGATGG 59 NA Drosophila melanogaster 50 Alh FBgn0037471 FBtr0113200 3 1 6 152 3R 2926907 2926926 TATGAGAAACAGACGACACG 59 2926183 2926201 ATGGCTATTGTGATGGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Ccp84Af FBgn0004778 FBtr0081695 2 1 1 234 3R 2515824 2515900 CAAGTTCTTCGCTGTTCTC 58 2515608 2515626 CTCAACCTGACTCTTCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10999 FBgn0037381 FBtr0078635,FBtr0078634 3 2 3 232 3R 1643579 1643597 TAACAATAAGTTCGCCACG 58 1643876 1643895 TAACTGGTGATTTGGGTTCC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Mes2 FBgn0037207 FBtr0078563,FBtr0078561 1 2 3 62 3L 22939655 22943634 TCATCAGAGAACGAAAGGG 58 22943660 22943678 TATGGCCATAGGTTGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 TyrR FBgn0004514 FBtr0078479 3 1 1 160 3L 22056139 22056786 AAGGTTGCATACAGGTCTG 59 22056908 22056928 CGAGATCTTCTGTTTCTCCTC 59 NA Drosophila melanogaster 50 CG14562 FBgn0037142 FBtr0078472 2 1 1 149 3L 21939204 21939899 GGATTTCTCAATACGTTCAAGC 59 21940008 21940027 GATAGCTCAAGTGGGATCAC 59 NA Drosophila melanogaster 50 CG14573 FBgn0037125 FBtr0078433 2 1 1 165 3L 21727440 21727458 GGATGTGGATACAGATGCC 59 21727587 21727605 CAACTTGCCCAATCTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7324 FBgn0037074 FBtr0078404 2 1 1 81 3L 21331902 21331979 CAAAGGGCTTATGAGAATCTC 58 21331841 21331859 TTAGCTGGGTAAAGCTCTC 58 NA Drosophila melanogaster 50 Cpr78Cc FBgn0037069 FBtr0078338 3 1 1 152 3L 21293724 21293812 TTTAAGCTATCGCTCTGCC 59 21293928 21293946 AATACCATTGCTGGTCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10581 FBgn0037046 FBtr0078326 2 1 1 60 3L 21026775 21026793 CCGAGAAATCAACATTGGC 59 21026733 21026753 TAAATCTTGGATCCTGCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12983 FBgn0037040 FBtr0114616 1 1 4 95 3L 20959293 20959313 AACCATAGAAAGGGTACAGAG 58 20958845 20959236 TTACGGGTAGCCTTATCCA 59 NA Drosophila melanogaster 50 CG3634 FBgn0037026 FBtr0078272 2 1 1 60 3L 20801973 20801991 GATCCTGATCTTTGAGTGG 57 20801866 20801952 GACTTGCTCTATAAACGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17637 FBgn0037004 FBtr0078207 2 1 1 60 3L 20497989 20498008 TAAATGGAGAAGGAAAGGTG 57 20498029 20498049 GTGACTATATTCTGTGAGGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5618 FBgn0036975 FBtr0078179,FBtr0078180 1 2 2 84 3L 20349366 20349448 AGTCGACTTTACACTGTGG 59 20349495 20349514 CTTTAAGAGGCGAGTAACCA 59 NA Drosophila melanogaster 50 scaf6 FBgn0053522 FBtr0091474 1 1 2 111 3L 17030124 17030195 GAGATGTACAAGGGAGTGG 59 17030031 17030049 CCTAACTCTTGTCGTCTCG 59 NA Drosophila melanogaster 50 CG18217 FBgn0036646 FBtr0089730 2 1 1 133 3L 16594833 16594851 GATAGAAACCTCGGTGTCC 59 16594535 16594677 CAATCCGATCTTTCTGATTCG 59 NA Drosophila melanogaster 50 CG4229 FBgn0036639 FBtr0075392 2 1 1 74 3L 16550912 16550930 GATGGCTACCAGTATCGTG 59 16550968 16550986 AAACGTTAGCAAATCGCTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG33257 FBgn0053257 FBtr0075378 3 1 1 60 3L 16339814 16339832 GAATGGCTATCACTACCGA 58 16339855 16339874 CTCAAAGTAACCACCTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13038 FBgn0040795 FBtr0075429 2 1 1 183 3L 16320658 16320677 TTAGTTTACATGGCTCTGGT 58 16320494 16320512 TGTGAAAGGTTCGATTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Zn72D FBgn0017453 FBtr0075493,FBtr0075494 1 2 2 286 3L 16104977 16105111 ATAGGACAGCTAATCGCAC 59 16104709 16104727 ATAGAATGTCTTGGTGGCG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Z600 FBgn0004052 FBtr0075549 3 1 1 116 3L 15502344 15502362 AAGTATTCCCTGGTACCAG 57 15502442 15502460 CTTATCAGCCTCGTAAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7275 FBgn0036500 FBtr0075547 2 1 1 96 3L 15492986 15493062 GAGGATTGCAACCTTTATACC 58 15493120 15493138 AGTAGTCAACATCGGTGAC 59 NA Drosophila melanogaster 50 stwl FBgn0003459 FBtr0075728 2 1 1 60 3L 14398367 14398386 CTAATATACCCACAACCACC 57 14398326 14398344 TGGGTTATACTCTTTCCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Meics FBgn0025874 FBtr0075791 1 1 1 60 3L 13956464 13956482 GCGACCCTTTAAATGTGAG 58 13956422 13956442 GGTAATCAAATGCTGGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10724 FBgn0036357 FBtr0075845,FBtr0075846 1 2 2 61 3L 13409019 13409104 TCATCAAGAATGCCCATCC 59 13409129 13409147 AGTGTTATTGTCCAGCCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG11263 FBgn0036330 FBtr0075873 3 1 1 60 3L 13000062 13000081 AAACATTCGTTACCCTTTCG 58 13000104 13000122 TCGATCTAGTTGCTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17152 FBgn0036250 FBtr0076026 2 1 1 60 3L 12118931 12118950 CACCTACATCCTACCAAGAG 58 12118890 12118908 GCCACTGTACAGAGATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ufd1-like FBgn0036136 FBtr0076223 2 1 1 67 3L 11115948 11116023 GATTATTATGCCTCCCTCG 57 11115899 11115917 TGAACAGCATTGGATACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34455 FBgn0085484 FBtr0112761 1 1 1 97 3L 9354002 9354020 CAAGACCTTTAAGGGTCCC 59 9354147 9354165 AGAGGTGTGAGTACAATGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32033 FBgn0052033 FBtr0076509 1 1 1 86 3L 8941283 8941301 TACGAATCCGAAATCGGAC 59 8941351 8941369 GGCCAAATTAGTGGAACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13308 FBgn0035932 FBtr0076581 3 1 1 61 3L 8801828 8801847 ATTATTGCACCGCAAATGAC 59 8801870 8801889 ACCTATACAGGATCTTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7546 FBgn0035793 FBtr0076792,FBtr0076791 3 2 2 104 3L 7504633 7504651 ACCAAATAGCCGAGAAGAC 59 7504716 7504813 CATCCACATCATATTCCTTCAC 58 NA Drosophila melanogaster 50 smid FBgn0016983 FBtr0076851,FBtr0076850 2 2 2 81 3L 7378360 7378440 TCAGTTAACGAACAGGACC 59 7378482 7378503 TATCATTTAGAGTGGGTACCCT 59 NA Drosophila melanogaster 50 SMSr FBgn0052380 FBtr0076870,FBtr0076871 1 2 2 108 3L 7368206 7368288 AATAACAGGGCTCTCATGC 59 7368116 7368135 TATCGTATTCATTGGGCACC 59 NA Drosophila melanogaster 50 CG8519 FBgn0035711 FBtr0076942 1 1 1 106 3L 6701487 6701507 GAGTACGATCATCAGACTGAG 59 6701575 6701653 TATTCGTCTTCAGCCTTGG 59 NA Drosophila melanogaster 50 Lcp65Ac FBgn0020642 FBtr0076991 1 1 1 207 3L 6137934 6137952 AAGTAACGTTGACTAGCCG 59 6138123 6138211 AAAGCAAAGTTGTAGCCCT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG34047 FBgn0054047 FBtr0100102 1 1 1 73 3L 5099420 5099545 CAGCTAACTTATCTTGTGGTC 58 5099367 5099386 GAGTAACATTAGAGATGCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13722 FBgn0035553 FBtr0073329 3 1 1 75 3L 4487529 4487549 TAAGCCAGAGCTACTTTACTG 59 4487417 4487435 GAATACCCATCGGTGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14969 FBgn0035440 FBtr0073082 3 1 1 128 3L 3334080 3334100 GCTAGTTCGGATTTAGTTTGC 59 3333914 3333990 AGTCCGGTTCATATTGTCC 59 NA Drosophila melanogaster 50 CG15879 FBgn0035309 FBtr0072916 2 1 1 62 3L 2168764 2168955 TTTCAAGGAGGTTAGAATACCG 59 2168723 2168741 CGATTACCATACCAACGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 metl FBgn0035247 FBtr0072813,FBtr0072814 2 2 2 121 3L 1638854 1639059 CTTCAAGCACAATGCTTGG 59 1638751 1638769 TCTGAAATCGCTCCTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7955 FBgn0035244 FBtr0072754,FBtr0072756,FBtr0072755 1 3 3 91 3L 1622656 1622740 CACCGAGCATAACATTCTG 58 1622795 1622813 CATCCTTGACTGTCGAGAG 59 NA Drosophila melanogaster 50 CG17180 FBgn0035140 FBtr0072550 1 1 1 148 3L 541363 541383 ACTCGAATAGCAACTCTAAGG 59 541549 541567 CAACTTGGCCTCTAGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34263 FBgn0085292 FBtr0112458 3 1 1 128 3L 265789 265809 GCTATTACCAATTGTGATCCG 59 265625 265700 GTAATCCGGTTTCCAATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Atf-2 FBgn0050420 FBtr0072381,FBtr0100299 2 2 3 60 2R 20757924 20757942 ACTCATCAAGAACTGCGAC 59 20757966 20757984 AAATGGATTTACGTGCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30421 FBgn0050421 FBtr0072369 3 1 1 114 2R 20642637 20642715 ATAAGGCGAAAGGTACTGC 59 20642792 20642811 AAACTGGTGTCTACATCTGC 59 NA Drosophila melanogaster 50 CG30172 FBgn0050172 FBtr0072193 2 1 1 78 2R 19918531 19918549 AGATTATGTGCATCCTGGG 59 19918345 19918363 GTTATAACTTCTGGCAGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3105 FBgn0034950 FBtr0072160 3 1 1 81 2R 19879127 19879205 CGTTAATGAAGCCAAGCAC 59 19879250 19879268 CTCGTGGTTACTCACTGAG 59 NA Drosophila melanogaster 50 CG13566 FBgn0034942 FBtr0072206 1 1 1 80 2R 19849568 19849586 AAACTATGGCACCTGTGAG 59 19849452 19849528 GTGAAGAATATCAGTAGTCCCTC 59 NA Drosophila melanogaster 50 Or59c FBgn0034866 FBtr0072020 2 1 1 60 2R 19360292 19360365 TCGAACCATCATACAGTGC 59 19360250 19360268 GGCAAAGATAGTGATCGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13545 FBgn0034828 FBtr0071972 3 1 1 256 2R 19045543 19045617 GCTTTGGCCCTATTAATCC 58 19045305 19045324 ATAGGATGAGGAGTAGACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp58c FBgn0034769 FBtr0071920 1 1 1 62 2R 18593641 18593719 AGCGAAGAGAATACCTCCA 59 18593597 18593616 GAATTGCTTGGACATTTGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG11474 FBgn0034688 FBtr0071801 3 1 2 127 2R 17960555 17960717 AGAGCTTTGCCTACTACAC 58 17960376 17960465 TTGTTCAATATCGGTACCCA 58 NA Drosophila melanogaster 50 CG4372 FBgn0034665 FBtr0071738 1 1 1 60 2R 17726166 17726184 GATCAAATTGTTCGGCACC 59 17726124 17726144 GTTCCACGTACTTATCAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 EfSec FBgn0034627 FBtr0071608 2 1 1 80 2R 17273458 17273476 TTACCTCAAGGAGAACAGC 58 17273339 17273414 ACCTCCTATAATAGTGCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pu FBgn0003162 FBtr0071578,FBtr0071580,FBtr0071579 2 3 3 82 2R 17069022 17069040 CTTCTACGGCAAAGTTTCC 58 17069086 17069163 ATATTTCGACAATGCGTGC 59 NA Drosophila melanogaster 50 CG3221 FBgn0034569 FBtr0071550 2 1 1 68 2R 16880287 16880305 TGCTGTTCAGGATCAACTG 59 16880178 16880196 GAATCATAGACAAACGGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15227 FBgn0034554 FBtr0071514 2 1 1 60 2R 16753878 16753896 GTACTACGAGGATCTTCCG 58 16753920 16753938 CATGATCACAGTGTTTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15905 FBgn0034462 FBtr0086491 2 1 1 69 2R 15534909 15534927 CGTTAGCATCAAGGATGTG 58 15534770 15534876 ATCGTTATACGTCTCCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10737 FBgn0034420 FBtr0086587,FBtr0086588,FBtr0086585,FBtr0086586,FBtr0100282 3 5 5 154 2R 15061509 15061527 AAATGGAGCAGATCTAGCG 59 15061861 15062091 TCAACTCGACCTTAAATGCA 59 NA Drosophila melanogaster 50 CG15116 FBgn0034415 FBtr0086596 3 1 1 70 2R 14943244 14943262 GTGCAACTCGATACATTCG 58 14943139 14943210 AAAGTAAGTCCGCATTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34196 FBgn0085225 FBtr0112389 2 1 1 64 2R 13997584 13997602 TTCCCATGGACTATGACAC 58 13997630 13997648 AAAGGCTCGAAATAAGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sub FBgn0003545 FBtr0086881 1 1 1 65 2R 13633611 13633687 TTATGCTTTCCTCTCAACG 57 13633564 13633584 CCTCTATCTCATCTTTGAGGT 58 NA DesignNoJunction Drosophila melanogaster 50 eIF3-S9 FBgn0034237 FBtr0086942,FBtr0086941 3 2 2 82 2R 13424493 13424512 CAATCTCTTCACCGATTTCC 58 13424615 13424633 TCTGCACTTTGAAGGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Ef1beta FBgn0028737 FBtr0087041 2 1 1 133 2R 12755780 12755798 GTTAAACGCGAATTTACCC 57 12755895 12756012 CCTTGCTGGGAGTATATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sli FBgn0003425 FBtr0087303,FBtr0112832 3 2 5 113 2R 11773665 11773756 CGAATGCTCCAACTAACTG 58 11773128 11773146 AGGAATTGCCTTTAGTCGA 58 NA Drosophila melanogaster 50 Ranbp11 FBgn0053139 FBtr0087278 2 1 1 60 2R 11571155 11571173 GCGCTATGAACTGAAAGTG 59 11571197 11571215 CAATTCGGTGAGTATCGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10253 FBgn0033983 FBtr0087428 1 1 1 87 2R 10818717 10818735 AAAGTTTCAGGGATTTCCG 57 10818288 10818667 TCCAAAGTCCCTAATGTAGG 58 NA Drosophila melanogaster 50 CG33506 FBgn0053506 FBtr0091446 1 1 1 93 2R 10745457 10745475 ATGGTTTACACCATGGGTC 59 10745320 10745338 GACCCAGAATGCTGTAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18327 FBgn0033904 FBtr0087522 3 1 1 149 2R 10054926 10054944 TGAGCATATACACCCATGC 59 10055057 10055184 GAAGTTGCGTCTTGATCAG 58 NA Drosophila melanogaster 50 AttC FBgn0041579 FBtr0087653 3 1 1 97 2R 9281504 9281522 TTATTGGACAAGTGTTCGC 58 9281582 9281664 GTGTCCATGATTGTTGTAGC 59 NA Drosophila melanogaster 50 CG8778 FBgn0033761 FBtr0087880 2 1 1 60 2R 8539835 8539854 TGTTGCATCACGTAATTTGG 59 8539794 8539812 CACGAGAACTTCAGTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13176 FBgn0033692 FBtr0087989 3 1 1 60 2R 8069064 8069082 CAGTTCGGTGATTTACCAG 58 8069103 8069124 GCACTATTATATCCTGCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wal FBgn0010516 FBtr0088082,FBtr0088083 3 2 2 122 2R 7578026 7578044 GGTACTCAATCCGATCACC 59 7577365 7577383 CCATCCACCTTGGAAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34054 FBgn0054054 FBtr0100109 1 1 1 87 2R 7297500 7297602 TAATACTTGCTGGCCAGTC 59 7297431 7297449 GAGCTTACTACATTCGGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 etaTry FBgn0011554 FBtr0088163 3 1 1 61 2R 7228564 7228584 CACTATGGATAACGACATTGC 59 7228523 7228541 TAAAGCTATCCAAGGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 micr FBgn0033522 FBtr0100460,FBtr0088262,FBtr0088263 1 3 3 81 2R 6321604 6321680 GAGCTGACATTGAGAACGT 59 6321724 6321743 GACTGTATCACTGACGTCTG 59 NA Drosophila melanogaster 50 Hr46 FBgn0000448 FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367 3 4 4 111 2R 6095623 6095704 CAATTTCCGCGATATTTCCA 58 6095531 6095550 CGAATCTATCGAGAACAGCT 59 NA Drosophila melanogaster 50 Jra FBgn0001291 FBtr0088410 2 1 2 182 2R 5984066 5984084 ATAATGGATCCGTCTGGAC 58 5984638 5984760 CAATGACGTCAATCAGTGG 58 NA InUTR Drosophila melanogaster 50 RpL31 FBgn0025286 FBtr0088526,FBtr0088527,FBtr0088525 3 3 3 114 2R 5475178 5475196 GTCTGAACAAGCACATCTG 58 5475344 5475362 TAAGTGTACAGCTTGTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1814 FBgn0033426 FBtr0088523,FBtr0088521,FBtr0088522 1 3 3 80 2R 5468497 5468576 AATCTACTACGAGGGTTCG 58 5468620 5468638 TGATCTCCGAAATAGAGCA 57 NA Drosophila melanogaster 50 Not1 FBgn0085436 FBtr0112674,FBtr0112672,FBtr0112673 2 3 3 83 2R 5460477 5460495 AGCAATACGATTCCTTCGG 59 5460278 5460432 GGGCATATTACCTAACATGGA 59 NA Drosophila melanogaster 50 Pkn FBgn0020621 FBtr0112897,FBtr0088603,FBtr0088605,FBtr0088602,FBtr0088604,FBtr0088601 1 6 6 100 2R 5141851 5141870 GGAGGATGTTAAGAAACAGG 57 5141703 5141788 CCAAGTGGTTAATTGTCGG 58 NA Drosophila melanogaster 50 CG8029 FBgn0033393 FBtr0088587,FBtr0088588 3 2 2 75 2R 5095833 5095923 CAGTCTGGAGTCACATGAC 59 5095962 5095980 CAGGTACAGATAAGCCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8734 FBgn0033315 FBtr0088728 1 1 1 60 2R 4515044 4515064 CTTTCTTCACAGCCATAACTG 59 4515004 4515023 GAGCTGAGTATCTTTGTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8712 FBgn0033258 FBtr0088823,FBtr0088822 1 2 2 61 2R 3985320 3985340 CTCCAAGTCTATAAGTTCAGC 57 3985279 3985297 GCTGTGATACCTCATTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1603 FBgn0033185 FBtr0088979 2 1 1 70 2R 3402667 3402742 GACTTGACTGCAATTAAGCT 58 3402616 3402636 GCATAGGTCTCTATGAATGAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG1621 FBgn0033182 FBtr0088984 2 1 1 60 2R 3379005 3379026 ATAAGAGATTTAAGTCGGAGCC 59 3378966 3378984 AAGTCATCGTCATCCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Spn43Ad FBgn0044011 FBtr0089053 3 1 1 190 2R 3041673 3041691 ACTATTCACATCGGAGGTC 58 3041444 3041462 AGAACGGGTGATTGATGAC 59 NA DesignNoJunction Drosophila melanogaster 50 Cyp6w1 FBgn0033065 FBtr0085987 1 1 1 76 2R 2061676 2061815 GATTGGAAAGAACTTGCAGG 59 2061854 2061872 GGGAGCATAGATCCTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mir-100 FBgn0064160 FBtr0081064 3 1 1 60 2L 18471450 18471469 GTAAATCCGAACTTGTGCTG 59 18471492 18471510 TGACAGACTCCCATAATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-640b FBgn0083025 FBtr0113543 1 1 1 107 2L 20419015 20419033 TGTTGAAGATGATGTGGCT 59 20419104 20419122 AGTTGGCAACCATCTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9336 FBgn0032897 FBtr0081427 1 1 1 122 2L 20859876 20859894 TTGCATGAAGAAGACCCTC 59 20860760 20860778 TTAACGAACGGCATAGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2478 FBgn0032872 FBtr0081403 2 1 1 85 2L 20652081 20652158 GAATCTGGAGAGGGAACTC 58 20652014 20652035 CAGCTATATGAATTGAGCAGAG 58 NA Drosophila melanogaster 50 CG16772 FBgn0032835 FBtr0081302 3 1 1 65 2L 19963267 19963285 CCCATTCAGTATCCCTACC 58 19963314 19963332 AGGAGTAAGCTTAGGTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)37Cc FBgn0002031 FBtr0081165,FBtr0081164 1 2 2 69 2L 19123277 19123295 GAATGTCAACATCACGCTC 59 19123226 19123244 AATGGTGTAGATCTTGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15170 FBgn0032733 FBtr0081184 2 1 1 62 2L 18989985 18990003 TTCTTCCCTACAAGGAGTG 58 18989760 18989959 TAATGGAGTCCACAATGGA 57 NA DesignRelaxed Drosophila melanogaster 50 CG10178 FBgn0032684 FBtr0081068 3 1 1 84 2L 18512377 18512457 CAATTGAAGGACCTCTACC 57 18512505 18512523 AGATCGATACTACGGTGAG 57 NA Drosophila melanogaster 50 btv FBgn0023096 FBtr0110948 2 1 1 80 2L 17969772 17969850 TACTATGGCAAGGAGAAGGT 59 17969711 17969729 TTCGTCATGGGTTAGACAG 58 NA Drosophila melanogaster 50 Dhc36C FBgn0013810 FBtr0080985 1 1 1 80 2L 17506725 17506886 CGTGGATAAGATTTGGAAAGAG 59 17506927 17506945 ATCTTGTCGATTTGCACCA 59 NA Drosophila melanogaster 50 trpgamma FBgn0032593 FBtr0080946,FBtr0080945,FBtr0114470 3 3 3 81 2L 16665214 16665233 TCGAGCAAGAATATTTGTCC 57 16665101 16665173 GCTTAAGGGTCTTATCATTCAG 58 NA Drosophila melanogaster 50 CG31821 FBgn0051821 FBtr0080809 3 1 1 132 2L 15901512 15901530 TTATCCGCTTCATAGAGCG 59 15901345 15901418 CGCGGGATTGTATTAATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11864 FBgn0028944 FBtr0080784 3 1 1 163 2L 15613070 15613142 TTGAAGATGATGCATTTGCC 59 15612926 15612944 CAAGTGAACGGTATTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33306 FBgn0053306 FBtr0080564 1 1 1 60 2L 13843141 13843161 TGAAGGATGTCCTGATTTACC 59 13843101 13843119 GACAGGTTCTCGATCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5787 FBgn0032454 FBtr0080405 1 1 1 164 2L 12709471 12709489 TACCAATTCCAAGTCCACC 59 12709260 12709278 ATAGAGGGAAAGACAGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6192 FBgn0032341 FBtr0080230 2 1 1 82 2L 11104383 11104401 ATCCAATCCGCAGATTCTG 59 11104248 11104266 TAGATGACTCAGCTGAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG17085 FBgn0032309 FBtr0080141 1 1 1 175 2L 10851681 10851699 TATTGAGGTTAGTTCGCGG 59 10851838 10851856 GAATCTGTATATGCCGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13142 FBgn0032251 FBtr0080028 2 1 1 83 2L 10440044 10440064 CCCTTCATAGATGTTACTCCA 58 10440108 10440190 ACGCTTCTCATCTACTTGAG 59 NA Drosophila melanogaster 50 CG5091 FBgn0032234 FBtr0080005 3 1 1 146 2L 10381313 10381385 TTCATTTCAAGTGCACGAG 58 10381494 10381513 ACCAACAATTCATCTCTTGC 58 NA Drosophila melanogaster 50 Fbp2 FBgn0000640 FBtr0079808 1 1 1 66 2L 9427244 9427322 ATGGGCATGAATCTGACTG 59 9427352 9427370 GTGTCTTGTCCATGTAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alien FBgn0013746 FBtr0079781,FBtr0079780 1 2 2 94 2L 8996671 8996753 CATCGAAGAATATGGCACTG 58 8996596 8996614 GTTGGTCTTAAACCACAGC 58 NA Drosophila melanogaster 50 CG13091 FBgn0032055 FBtr0079684 3 1 1 75 2L 8519936 8519954 GAATGAAACGGTGGAAGGA 59 8520093 8520111 CGGTTTAGCCTTGAGTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7191 FBgn0031945 FBtr0079485 1 1 1 60 2L 7773612 7773631 CGCTACTATCGAAGGTATCC 59 7773654 7774214 AATTCATGTAAGAACCGCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5149 FBgn0031904 FBtr0079469,FBtr0114587 1 2 2 106 2L 7386510 7386528 TACTACATCATGGAACGCG 59 7386181 7386440 TATTGCTCCAATTGCTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11050 FBgn0031836 FBtr0079292,FBtr0079293,FBtr0079291 3 3 3 105 2L 6616056 6616075 ATCCAAAGACGATAAGCGAG 59 6616142 6616222 CTCGTATTCCTCAAACAGCT 59 NA Drosophila melanogaster 50 CG13984 FBgn0031796 FBtr0079247 1 1 1 60 2L 6308876 6308896 CAGCACTATTTGCAGAATGAG 59 6308917 6308936 CTCCATAGTCGAAGAGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14017 FBgn0031721 FBtr0079105,FBtr0079104 1 2 2 60 2L 5554043 5554061 AGACATCGCCTACAATCAC 59 5554085 5554103 TAGATACCGTCTGTCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp4ac2 FBgn0031694 FBtr0079067 3 1 1 115 2L 5266887 5267085 TGATTAGCACAGCACTCTC 59 5267161 5267182 TAGCGTAAACTGAGGAATAACC 59 NA Drosophila melanogaster 50 NTPase FBgn0024947 FBtr0077680,FBtr0077682,FBtr0077683,FBtr0077681 2 4 4 65 2L 2881300 2881382 GCTTTACAAGAAGATAGATGGC 59 2881256 2881274 GTCAGAACGTTGTATGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5080 FBgn0031313 FBtr0077981,FBtr0077982 1 2 2 197 2L 1162089 1162107 CTCCTACAATCAGCTGGAC 59 1161853 1161928 TTGTACTTCTCCTCTTGCG 59 NA DesignNoJunction Drosophila melanogaster 50 nAcRbeta-21C FBgn0031261 FBtr0078064,FBtr0078065 1 2 2 80 2L 545556 545825 CTGAATCTCCGATGGAGAG 58 545869 545887 GGACTTCAAAGTGATCTGC 58 NA Drosophila melanogaster 50 al FBgn0000061 FBtr0078053 3 1 1 78 2L 384874 384892 TTATCCCGACGTGTTTACG 59 385739 386319 TTGAAACCAAACCTGAATGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG11601 FBgn0031244 FBtr0078137 3 1 1 64 2L 283010 283028 GAGATTCCTGGTCCATCTC 58 282964 282985 GGAAGTAGTGAAAGTATATCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR31331 FBgn0051331 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR32286 FBgn0052286 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Sep1 FBgn0011710 FBtr0077198,FBtr0077199 1 2 2 117 X 21230623 21230641 GAGTTCACCCTAATGGTGG 59 21230722 21230806 TTTGTTTCTCTATGGCGTC 57 NA DesignRelaxed Drosophila melanogaster 50 D2R FBgn0053517 FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461 1 4 5 80 X 19905587 19920746 TACTTTCTGGTAAATGGAGC 57 19905526 19905545 AGTAGAGCATATCACATCCA 57 NA Drosophila melanogaster 50 CrebB-17A FBgn0014467 FBtr0074555,FBtr0074556,FBtr0112879,FBtr0074554,FBtr0074557,FBtr0112877,FBtr0112878 1 7 7 172 X 18267097 18267115 GGAGTCATACAGACAGCAG 59 18267324 18267342 TTACACGGAAAGGTTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Gbeta13F FBgn0001105 FBtr0074109,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107 1 5 6 143 X 15755398 15755416 CAACTCTTGCAGAACACAG 58 15755523 15755614 CTCTTGTTAGATGGTGGCT 58 NA InUTR Drosophila melanogaster 50 SK FBgn0029761 FBtr0070769 1 1 7 100 X 5292704 5292722 TTACATCCTGACACAGCTG 59 5292784 5293573 GGAACACTTCTAGAATGTGGA 59 NA Drosophila melanogaster 50 CG11596 FBgn0023522 FBtr0070318,FBtr0070320 3 2 3 119 X 1822604 1823045 CATGGACCAGATTGATATTCCA 59 1823125 1823143 CGTTCTAAGGCTCCTTCAG 59 NA Drosophila melanogaster 50 futsch FBgn0085416 FBtr0112628 3 1 1 134 X 1342696 1342714 CACGTGGACTTCTTTAAGC 58 1342810 1342893 TATAATGGTGACCTCCAACTC 58 NA Drosophila melanogaster 50 Caps FBgn0053653 FBtr0091630,FBtr0091632 2 2 3 126 4 1254595 1257735 GAACATTACGGAGAACTGC 58 1257824 1257843 TAATGAGTCCAGTACTGTCG 58 NA Drosophila melanogaster 50 Dyrk3 FBgn0027101 FBtr0100402,FBtr0100404,FBtr0100406,FBtr0100403,FBtr0100405 2 5 5 140 4 1230561 1230632 AGTTACAGGGCAGAATAGGA 59 1230440 1230458 AAGTCCGTTTCTGGAACAG 59 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 3 7 7 85 4 208987 209060 CGGATCATAGACTTACGGA 57 208920 208938 ATCGAAGCATGGTTTAGTC 57 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 2 14 14 109 3R 27690344 27690863 AAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 ro FBgn0003267 FBtr0085090,FBtr0085091 1 2 2 145 3R 22703382 22703400 GAGTACATCTCCAGGAGTC 58 22702883 22703274 ACAAAGTTTCTGTAGTGCTG 58 NA Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100334 3 1 9 156 3R 22699712 22699802 AACAGCTACCCATATACGG 58 22699270 22699592 TAGTTGTCCCAATCTAGCG 58 NA InUTR Drosophila melanogaster 50 CG13408 FBgn0038929 FBtr0084179 2 1 1 80 3R 17907607 17907626 GAATAATGTGGAGGGAGCTC 59 17907669 17907986 TTGTGCCTCAGATAGTCAC 58 NA Drosophila melanogaster 50 CG6569 FBgn0038909 FBtr0113263 1 1 3 80 3R 17693174 17693192 ATCGAAACCATGGAGATGG 59 17693034 17693130 ATTAGTCTCTGGTCCCTGG 59 NA Drosophila melanogaster 50 alt FBgn0038535 FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416 1 6 6 163 3R 13500932 13500950 TAGCAACCACAATAGCACC 59 13500724 13500805 ATGTGTTTGTCGTCTTGGT 59 NA Drosophila melanogaster 50 trx FBgn0003862 FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949 3 5 5 118 3R 10091224 10091245 ATGAAGTATCGGACTCTTAAGG 59 10091050 10091145 TCGATAACCATTTCACCCG 59 NA Drosophila melanogaster 50 dpr5 FBgn0037908 FBtr0082395,FBtr0082394 3 2 2 110 3R 7331200 7331218 TATGTTCGATGTCTGGAGC 59 7331354 7331372 CATCCAGCAATTTCTACCG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG5281 FBgn0037902 FBtr0082391 3 1 1 61 3R 7262513 7262531 CAATGTGTACATCCTGCTG 58 7262556 7262574 AATTCGTCATGATGACGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scpr-A FBgn0037889 FBtr0082357 2 1 1 61 3R 7066935 7066955 TCTCCAATTGATTCTCCTAGC 59 7066978 7066996 GGAGAGCACAATAGTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8176 FBgn0037702 FBtr0082064,FBtr0082065 3 2 4 185 3R 5348603 5349931 TAGCAATCAAGTCTCTGGC 59 5350154 5350172 GAATTCTGCGTCTTCATGC 59 NA Drosophila melanogaster 50 neur FBgn0002932 FBtr0082001,FBtr0082002,FBtr0082004,FBtr0082003 2 4 4 225 3R 4847925 4847943 CGATATAAACGGCCAACTC 58 4847659 4847677 ATTCTCGTAGCAGATGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11970 FBgn0027503 FBtr0081959 2 1 1 247 3R 4814693 4814784 GATCATTGTGGGCAATACG 58 4814994 4815013 CTGGAGTAGCTCGAATAACG 59 NA DesignRelaxed Drosophila melanogaster 50 CG41466 FBgn0084027 FBtr0111214 2 1 1 83 3R 298579 301806 TAATTATGGACTGGTCCCG 58 301853 301871 CAAGGGTACACAAACTTCG 58 NA Drosophila melanogaster 50 CG14642 FBgn0037222 FBtr0089687,FBtr0089688 2 2 2 161 3R 67638 67714 TACATCCATATACGAGGCG 58 67495 67514 TTAAGTAGGGCTATGTCGTC 58 NA InUTR Drosophila melanogaster 50 CG7607 FBgn0036145 FBtr0076163 1 1 1 83 3L 11193419 11193506 ATGGATGCTGGTTTCTACG 59 11193553 11193571 AACCATAACGTAGTCCGTG 59 NA Drosophila melanogaster 50 Gr66a FBgn0035870 FBtr0076713 2 1 1 60 3L 8299720 8299741 TATCGGTCTGATTATGATGGTC 59 8299681 8299699 AATTCTACCCTGGTTTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7979 FBgn0035848 FBtr0076690 3 1 1 98 3L 8174976 8174994 TGTTATGACGAGGGAAAGC 59 8175342 8175361 ATAAGTGTTAAAGATGCGCG 58 NA DesignNoJunction Drosophila melanogaster 50 D19B FBgn0022699 FBtr0077017 3 1 1 90 3L 6177480 6177498 TCTTCAAGATGCTCGAGTC 59 6177408 6177427 GAGTCATCCTGAGATACTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ppm1 FBgn0035143 FBtr0072553 2 1 1 60 3L 582081 582099 GTTTAATCGGGTCAATGGC 59 582123 582141 CTTGTAGATAAAGTCGCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HmgZ FBgn0010228 FBtr0071673,FBtr0071674 1 2 2 64 2R 17585804 17585905 GAAGGATAAGACCGAGTGG 59 17585758 17585776 TTACCGCCTTGTTGTACTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG34115 FBgn0083951 FBtr0110813 2 1 1 98 2R 16864108 16864126 GTTTATTGTGGCCTTTGTG 57 16864246 16864264 TAGGGATAACGGTACTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 Ext2 FBgn0029175 FBtr0100512,FBtr0100513 1 2 2 60 2R 12034454 12034472 CTGACCACTGATGAGTTGG 59 12034354 12034374 CAATGTGATCAGGAAACTCTC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087270,FBtr0087271 1 2 7 91 2R 11872859 11872986 ATCTTAAGCTAACCTGGTACAG 59 11872789 11872807 CTCCAAGTAGTGGAAGGTG 59 NA Drosophila melanogaster 50 CG13016 FBgn0033899 FBtr0087519 3 1 1 108 2R 10045929 10046004 CTCTTCTTATTCTATCCTGTGG 57 10046072 10046091 GTAGGTCGTTGATATACACG 57 NA Drosophila melanogaster 50 cnn FBgn0013765 FBtr0100656,FBtr0087705,FBtr0087704,FBtr0100654,FBtr0087703 2 5 5 84 2R 9327822 9327906 AAGTCAGAGGAATCTACATCAC 59 9327759 9327777 GATCTACCTTGGCACAGTC 59 NA Drosophila melanogaster 50 Cyp4p3 FBgn0033397 FBtr0088593 2 1 1 131 2R 5131228 5131306 CCAAGCTAACATAGATGATGAG 58 5131398 5131416 GTAGTTTCCCTACCCATGG 59 NA Drosophila melanogaster 50 Su(var)2-10 FBgn0003612 FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578 2 9 9 80 2R 5005652 5005727 GCGAGGCTTAATCAAAGAG 58 5005770 5005789 CAGTTAAGGGAAACCTTCAG 58 NA Drosophila melanogaster 50 mXr FBgn0050361 FBtr0088756,FBtr0088755,FBtr0088754 1 3 3 80 2R 4367409 4367427 GTTATTTGCACGGTCTACG 58 4366970 4367366 CATGGTGAATCCAATATGCT 58 NA Drosophila melanogaster 50 CG1603 FBgn0033185 FBtr0088979 3 1 1 117 2R 3403216 3403237 AGTGACTTCTTTATGTCTGAGG 59 3403060 3403078 GATTGCTCCGAATAAACGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG11123 FBgn0033169 FBtr0088971 2 1 1 60 2R 3329424 3329442 AAGCTCAGTCATTCTGCTC 59 3329465 3329484 CTGGATCATCAATTTGGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13108 FBgn0032100 FBtr0079773 3 1 1 60 2L 9165137 9165155 GTGGAACTACAATCAGAGC 57 9165176 9165197 CCTCCAAAGTATCTTCTTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13791 FBgn0031923 FBtr0079521 3 1 1 69 2L 7578286 7578304 CAATTGCAATACCAGCGAC 59 7578235 7578253 ACCTTAGTGGTTCTGTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr28b FBgn0045495 FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458 2 5 5 118 2L 7455130 7455213 ATTGTATTTCACGATCAGCG 58 7455031 7455049 TATTGAAGGTCTCACAGCA 58 NA Drosophila melanogaster 50 CG5149 FBgn0031904 FBtr0079469,FBtr0114587 2 2 2 61 2L 7386439 7386458 GAAATGACACCTTCAACAGC 59 7386156 7386174 GTAGCTCTTGATCACCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 tim FBgn0014396 FBtr0114526,FBtr0077564,FBtr0077565,FBtr0100349,FBtr0077567,FBtr0114527,FBtr0100350,FBtr0077566 3 8 8 81 2L 3502696 3502714 GATTATGTCGCCAATGGAC 58 3502545 3502651 CTTCATGTTGATGAGGCTG 58 NA Drosophila melanogaster 50 Traf2 FBgn0026318 FBtr0071188 1 1 1 60 X 8049920 8049940 TATCGAACATCATACAGCTGG 59 8049880 8049899 ATCTCGATCTTGATGAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CDC45L FBgn0026143 FBtr0070182 3 1 1 60 X 923485 923504 AGAATGATTTGCATCTGGTC 58 923392 923463 GAATACCTCATGGATTCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 elav FBgn0000570 FBtr0114366,FBtr0070091,FBtr0100254 1 3 3 60 X 412385 412404 AGTAGGCTTTATTCGATTCG 57 412344 412362 GTTCAAGGCAATGATAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1542 FBgn0039828 FBtr0085757 3 1 1 84 3R 27039468 27039544 GAACGATGTGACCAAACTG 59 27039592 27039610 TGTGTTGATCATGTCCAGG 59 NA Nonspecific Drosophila melanogaster 50 CG31058 FBgn0051058 FBtr0085198 2 1 1 60 3R 23474725 23474746 TTATTTCTCCACAGGATTACCC 59 23474686 23474705 ACATACTCTGACTTGGACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6356 FBgn0039178 FBtr0084601 2 1 1 81 3R 20112885 20112965 TGAACTGCTACCTGATGAG 58 20113008 20113028 CTGAAGAGAATCTTGTAGACG 57 NA Drosophila melanogaster 50 CG13604 FBgn0039137 FBtr0113275,FBtr0113276,FBtr0113277,FBtr0084509 2 4 4 125 3R 19815591 19815609 ATTTGGATTATGAGCCGGT 59 19815424 19815503 TATTTCCAGTTGTCTGCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG10217 FBgn0039113 FBtr0084464,FBtr0084465 3 2 2 158 3R 19587469 19587488 TTAGTACAGTCTGCTCTTGG 58 19587272 19587349 CACCAAGAATTCTCGTTCTG 58 NA Drosophila melanogaster 50 Cpr92F FBgn0038819 FBtr0083919 2 1 1 192 3R 16495459 16496870 CCATTCTTTATTGCCGCAG 59 16497026 16497044 CATCCACGTAGGAGTAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ort FBgn0003011 FBtr0083784 2 1 1 93 3R 15488647 15488771 ATAGAAGGATTGTAACCACCAC 59 15488825 15488843 AGTATTATCCGCGACTCCT 59 NA Drosophila melanogaster 50 CG7985 FBgn0028499 FBtr0083559 2 1 1 83 3R 14038862 14038880 CTACAAGGAGGACGAACTG 59 14038980 14038998 CCAAAGGTTTGAACGAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 Pxd FBgn0004577 FBtr0089287 1 1 1 81 3R 12853282 12853364 TTACTCCTGATCAACTGGAG 58 12853408 12853426 ATGGATGAAATGTGGTTGC 58 NA Drosophila melanogaster 50 CG14897 FBgn0038434 FBtr0083309,FBtr0083310 3 2 2 95 3R 12294591 12294682 CTTCATTGAAGCAATCGCA 59 12294357 12294376 AAGTATTTCCTTCGTCGTCC 59 NA Drosophila melanogaster 50 CG12241 FBgn0038304 FBtr0083051 3 1 1 93 3R 11045789 11045868 AGCTTCTAGCAATGACCAG 59 11045925 11045943 ATTCGGATTGCTAAAGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 beat-Va FBgn0038087 FBtr0082688 2 1 1 186 3R 8669307 8672706 TAATTGACTACCCAATCGC 57 8669081 8669099 TAAATCGGACTCGTCAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8036 FBgn0037607 FBtr0081882,FBtr0081881,FBtr0081883 3 3 3 189 3R 4499021 4499107 GATCACTACCAGCAAGGAG 59 4499259 4499278 CCTAATCCTTGAGGATCTCG 59 NA Drosophila melanogaster 50 Atu FBgn0019637 FBtr0078704 2 1 1 158 3R 1440189 1440307 AGGATGTGGGAAAGAAAGC 59 1440429 1440447 TCATAGAACGACTGTGGGA 59 NA Drosophila melanogaster 50 CG1427 FBgn0037347 FBtr0078702,FBtr0078703 2 2 2 83 3R 1427573 1427642 GTATAGCCTGCAAACTCGT 59 1427687 1427707 GTTGTGCCTCTAGTAAGTCTC 59 NA Drosophila melanogaster 50 CG13060 FBgn0036606 FBtr0075370 2 1 1 202 3L 16313032 16313110 AAATTTATCGGCGTCATCG 58 16313276 16313294 GTGGTCTTCACGATAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5644 FBgn0035948 FBtr0076556 1 1 1 100 3L 8971374 8971459 AGTGATGAAGAAACTTGCAC 58 8971293 8971314 CAATCTCTTGAAGATGATCAGC 59 NA Drosophila melanogaster 50 CG7112 FBgn0035879 FBtr0113153,FBtr0076605 3 2 2 81 3L 8343179 8343256 GCTCCTTCATATGCCTGAG 59 8343301 8343319 TTTGTAGAGATCACGGAGC 59 NA Drosophila melanogaster 50 mRpL50 FBgn0028648 FBtr0076891 2 1 1 60 3L 7236647 7236665 CTCGCTTCAACTGAAATCC 58 7236605 7236626 GTTCAGGAATTCGAATTTCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 msl-3 FBgn0002775 FBtr0076926,FBtr0076927 3 2 2 92 3L 7117435 7117511 GTTATGTCCACTGTCTGCA 59 7117361 7117379 CTCCGTATACAGCAAGTGG 59 NA Drosophila melanogaster 50 dib FBgn0000449 FBtr0073205 3 1 1 78 3L 4063580 4063600 CAGGATTCTTAATCAGGATGC 58 4063699 4063717 TACCATGTTCTGGGTAACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14961 FBgn0035439 FBtr0073069 1 1 1 60 3L 3330612 3330630 GTACATCCAGTCCTACCAC 58 3330654 3330728 ATTCGATGACTCGTAGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9129 FBgn0035196 FBtr0072653 3 1 1 66 3L 1250879 1250897 GAGAATGGACAAGTCGGAG 59 1250924 1250945 CATGAACTCCAACATATACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8067 FBgn0033891 FBtr0087595 3 1 1 60 2R 9871620 9871639 TAGTTAAGGACGAAGAGCAG 58 9871718 9871737 CTAGAGATGACCAGATCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG34234 FBgn0085263 FBtr0112428 1 1 1 83 2R 8374752 8374828 GATGAGAATGCGAGAAAGTC 58 8374688 8374706 ATAACGTCAAAGGTGTCAG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Mys45A FBgn0033379 FBtr0088628 3 1 1 96 2R 5000835 5000915 CATGAAGCTCAATTCGAGC 59 5000757 5000775 CTCGATCATGATATCAGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14767 FBgn0040777 FBtr0088718,FBtr0088720,FBtr0088719 3 3 3 118 2R 4606988 4607163 TCGCTATTACAACTCTCACC 59 4606889 4606907 CTCAGGTGGTAGTTCTAGC 58 NA Drosophila melanogaster 50 snoRNA:Psi18S-525e FBgn0083034 FBtr0113546 1 1 1 60 2L 20419490 20419508 TTTGTGTCTCAAATGCTCC 58 20419530 20419550 GCATAATTATTCAGGATGCCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9320 FBgn0032882 FBtr0081409 2 1 1 84 2L 20753100 20753185 CTACTTTAAGGAATACGTGGAC 58 20753230 20753248 CAGATTCAGCTCAAACAGC 59 NA Drosophila melanogaster 50 Sos FBgn0001965 FBtr0080541 1 1 1 97 2L 13816692 13816774 TCAGAGAAAGAACGAGCAG 59 13816835 13816853 CGTTGGGTACACTAAGGTG 59 NA Drosophila melanogaster 50 CG34162 FBgn0085191 FBtr0112353 3 1 1 60 2L 11532800 11532821 GAATGGATATAGGAACATGGCT 59 11532841 11532924 TGATGGTATCATTGCAATCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG4497 FBgn0031895 FBtr0079418 1 1 1 115 2L 7192047 7192506 GATATTCACGGAAAGTCGC 58 7191950 7191968 TCGAGATGAACAACTTGGG 59 NA Drosophila melanogaster 50 CG9497 FBgn0031800 FBtr0079283 3 1 1 257 2L 6347615 6347794 GGACCTAAACTTTATCACTACC 57 6347313 6347331 CTGCATCAGTAGTCCATCG 59 NA DesignNoJunction Drosophila melanogaster 50 snoRNA:Or-aca5 FBgn0086672 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:K2:56EF FBgn0011897 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG12856 FBgn0033966 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG41352 FBgn0083994 FBtr0111195 2 1 1 60 X 22319058 22319081 CGATACTAGTAATGTAACCAGAGG 59 22319100 22319118 ACGGGCATTATTTAGACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fog FBgn0000719 FBtr0077342,FBtr0100538 1 2 2 169 X 22246596 22246614 TTTATGTGGCCAGACTTGG 59 22230964 22230982 CCATTCTCTGGACATTCCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14232 FBgn0031061 FBtr0074813 2 1 1 96 X 19597221 19597444 CAGTTTAAGCTGTACGCTG 58 19597143 19597161 TGTACTGGTGATAGTGCTC 58 NA Drosophila melanogaster 50 Sec61gamma FBgn0031049 FBtr0074745 3 1 1 171 X 19537927 19537945 AGGTTGTTAAGTTTGCCGA 59 19538078 19538098 GGGATGTGTATCAACTTAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8028 FBgn0031010 FBtr0113005 3 1 2 78 X 19173010 19173028 ATTTGAGCTGGGATACAGC 59 19171954 19171973 AATACGAGATGCCAAGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Bx FBgn0000242 FBtr0074598,FBtr0074597,FBtr0074599 1 3 3 108 X 18461161 18461553 GACTACTTGAGATTGTTTGGC 59 18461621 18461641 ACTCCAAGTGATAGACATTGG 59 NA Drosophila melanogaster 50 Aats-his FBgn0027087 FBtr0074593,FBtr0074594 2 2 2 239 X 18413273 18413353 ATAAGTTGGATAAGTCGCCC 59 18413555 18413573 TAACTCGCTTATCCAGACC 58 NA DesignRelaxed Drosophila melanogaster 50 CG12991 FBgn0030847 FBtr0074448,FBtr0074449 2 2 2 114 X 17492122 17492140 ATTGGGATCGTACTGTACC 58 17492218 17492313 CATCCGAATTGTCACTCAC 58 NA Drosophila melanogaster 50 CG5010 FBgn0030821 FBtr0074387 3 1 1 127 X 17044229 17044247 TCAAACAGTTCATCCAGTG 57 17044338 17044356 GATATTCTACCGGAGCTGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Cap FBgn0015615 FBtr0074291,FBtr0074290 1 2 2 87 X 16483582 16483674 GATGAGATAGATCAGGCGC 59 16483513 16483531 TAATGAACTGGGCAGTGTC 59 NA Drosophila melanogaster 50 CG9992 FBgn0030744 FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309 2 5 5 94 X 16277004 16277023 TAGTCCTACTTCCGAGACTG 59 16276867 16276947 CAAAGTTGTGCAAGTCCTG 59 NA Drosophila melanogaster 50 CG9066 FBgn0030703 FBtr0074166 3 1 1 129 X 15783355 15783373 TTTACGATGTCAGCAAAGG 58 15782439 15782458 TCATCGTATTCATCCTTGTC 57 NA DesignNoJunction Drosophila melanogaster 50 Chc FBgn0000319 FBtr0112798,FBtr0074180,FBtr0112797,FBtr0074182,FBtr0074181,FBtr0074179 1 6 6 92 X 15722670 15722757 CTTTATCAGTGTTACGACTTGC 59 15722599 15722617 AATCAAATAGGGCATGGCA 59 NA Drosophila melanogaster 50 l(1)G0136 FBgn0026666 FBtr0074084 1 1 1 96 X 15629320 15629338 CTTCATCGACAAGAAAGCG 59 15629465 15629483 GTTCGGATTGTTAAACACG 57 NA DesignNoJunction Drosophila melanogaster 50 CG9220 FBgn0030662 FBtr0074064 3 1 1 182 X 15481545 15483667 AACATATTAGGAATCAGTCCGG 59 15481384 15481402 GATGTTCTCCATCACCTCG 59 NA Drosophila melanogaster 50 CG9512 FBgn0030593 FBtr0073979 2 1 1 140 X 14798009 14798027 ATTGGTTCACCTCAGATCC 58 14796867 14796885 GATCTGGAAGATCATCGGC 59 NA DesignNoJunction Drosophila melanogaster 50 Ag5r2 FBgn0020508 FBtr0073938 1 1 1 60 X 14677861 14677879 TCAACGATGACTACAAGTG 57 14677819 14677838 GCAATGTAGTTCCTCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0007 FBgn0026713 FBtr0073900,FBtr0073901 2 2 2 97 X 14117986 14118069 CCAGAACAATTACAGTTCGAC 59 14118128 14118146 TGATGTCCTTAAGCTGCTG 59 NA Drosophila melanogaster 50 up FBgn0004169 FBtr0073851,FBtr0100561,FBtr0073853,FBtr0100563,FBtr0073852,FBtr0100562 1 6 6 80 X 13489402 13489421 GAGCTCATTGTCAAATTGGA 58 13489264 13489362 CAACTCTTTCAAATCGTAGTCC 59 NA Drosophila melanogaster 50 CG11816 FBgn0030495 FBtr0073785 1 1 1 60 X 13447203 13447221 CAGGAGGGCTACAATTCAG 59 13447161 13447180 AGTACTGTGTCTGGATTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10617 FBgn0030476 FBtr0073767 3 1 1 80 X 13257505 13257626 ATGGCCAGTATACAATCCG 59 13257670 13257688 CTCCTTGTCGATGGTATCG 59 NA Drosophila melanogaster 50 CG1806 FBgn0030360 FBtr0073574 3 1 1 75 X 11903187 11903206 CCGTATCTGAGTGGATTGTC 59 11903310 11903328 TGATCTTGTGATCCCTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Klp10A FBgn0030268 FBtr0073478,FBtr0073475,FBtr0073477,FBtr0073476,FBtr0073479 1 5 5 93 X 11027534 11027552 TTGTGACCCTGAATATGCC 59 11027383 11027477 AGAAGATCGAAGACCTTGC 59 NA Drosophila melanogaster 50 Gtp-bp FBgn0010391 FBtr0073480 3 1 1 252 X 11022187 11022206 AGTACCAGAACATCAACAGC 59 11021867 11021885 TTCGATATCAGATGGTCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2157 FBgn0030244 FBtr0073382 1 1 1 112 X 10764124 10764221 CTGGGTGGATTAGATGGTG 59 10764297 10764315 GATCCATAGCCACCAAGAG 59 NA Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475 2 6 7 169 X 10173217 10217610 AAGGTCAAAGAGATGATGGA 58 10173067 10173085 AGTCCCATAATGTACAGGG 58 NA Drosophila melanogaster 50 Sp1 FBgn0020378 FBtr0071381,FBtr0112894,FBtr0071380 1 3 3 60 X 9648300 9648318 GAACATCCATTCGTGTCAC 58 9648342 9648360 CAGATGTGACGTCTTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mei-P26 FBgn0026206 FBtr0071303 1 1 1 87 X 9064243 9064342 ATCGCTATACGAGACAACG 59 9064393 9064411 GATAGAGGAATGTGCCGTC 59 NA Drosophila melanogaster 50 CG32706 FBgn0052706 FBtr0071287 2 1 1 80 X 8981291 8981309 GACTAAGCTAGGCGAAGTG 59 8981353 8981371 TTTGAGGGATTTGCTACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mys FBgn0004657 FBtr0071105 2 1 1 118 X 7958772 7958790 TATGTCTCGACCATTCCCA 59 7959558 7961105 TTCACCTCGTTAGAGAAGC 59 NA Drosophila melanogaster 50 l(1)G0193 FBgn0027280 FBtr0071130 2 1 2 82 X 7837250 7837724 CCATGATAGTGTCTACCGA 57 7837186 7837205 GGCTATATCCGCATATAGTG 57 NA Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 1 12 15 238 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978622 6978640 ATTGATCTACCTCTGTGCA 57 NA DesignRelaxed Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 1 8 8 166 X 6579447 6579465 ACAACGTCTTCCACTACAG 59 6579594 6579676 TGGAGAAGTCACATTGAAGG 59 NA Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 3 8 8 60 X 6579593 6579674 GCCTTCAATGTGACTTCTC 58 6579697 6579716 GTGGATAACTGTCCACAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14798 FBgn0029588 FBtr0089693,FBtr0089694 1 2 2 286 X 1587078 1587096 AAATCGAGCCTCACATCAG 59 1587472 1587490 AAAGTCATGGGATCCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 l(1)G0431 FBgn0028274 FBtr0070297 2 1 1 90 X 1356602 1356687 CTTATGGATACAATCGCGG 58 1356530 1356550 CCATTGACGTAGTCTTTAAGC 59 NA Drosophila melanogaster 50 CG32813 FBgn0052813 FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219 3 4 6 225 X 1283913 1283931 CAACCATTCGTTCATGGAC 59 1284338 1284356 CTTGATAAGGATCACGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177 3 4 5 90 X 938610 938748 AATCTGGATAAGGCTCCTG 58 938802 938820 CACTATCTGGCATACCTGG 59 NA Drosophila melanogaster 50 CG7359 FBgn0025617 FBtr0070141 3 1 1 87 X 700766 701013 ACCTATTCCACTACCTAATCGA 59 701061 701079 AGGTAATTGAAGGCCAGTC 59 NA Drosophila melanogaster 50 svr FBgn0004648 FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070082 3 5 7 107 X 396959 398709 GAACTTTGATGGCAACTTCC 59 398778 398797 TGGTGTTCGTATTTAGTCGG 59 NA Drosophila melanogaster 50 CG41536 FBgn0085675 FBtr0114123 3 1 1 67 U 8007360 8007381 CACCTCCGTTATTATTTGAGAG 58 8007314 8007332 AATTCAAGGACATTGCCAG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40793 FBgn0085517 FBtr0113930 2 1 1 156 U 6328564 6328582 TTTGAGAAGACATGTGCTG 57 6328200 6328218 TGAATTCGGCTCTGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17691 FBgn0039993 FBtr0113760,FBtr0113759,FBtr0113761 1 3 4 101 U 1184287 1184359 CATGTGCTATTAGAAGTAGCAG 58 1184421 1184439 AATGGTAATAGCGTCCCAC 59 NA Drosophila melanogaster 50 CG40245 FBgn0058245 FBtr0113844 3 1 1 86 U 687936 687954 GATTCTCCAGAAGCTTCTG 57 687868 687887 TCGAATTGGTTCCATATGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Caps FBgn0053653 FBtr0091631 1 1 3 82 4 1254541 1254562 GAGGACTTAATACACTTAGCAG 58 1254605 1259581 AACCATGCAAATGCTTCTC 59 NA Drosophila melanogaster 50 CG41130 FBgn0069921 FBtr0100311 2 1 1 62 4 1223118 1223136 TAAAGCGTGTCCTTTACCA 58 1223162 1223180 GTCATACAAAGTGGCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snRNA:U1:82Eb FBgn0004183 FBtr0078851 3 1 1 61 3R 773830 773849 ATGGAAATTCCTATGCCGAG 59 773788 773806 ATCACGGTTAACCTCTACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5-HT7 FBgn0004573 FBtr0085746 1 1 1 60 3R 26795820 26795839 CTCTCGTCTCTATTCCTCTG 58 26795779 26795799 CGTAGATAATAGGGTTCAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ctr1C FBgn0062411 FBtr0085750,FBtr0085749 2 2 2 60 3R 26789597 26789617 CGGAAGGGATCAGTATAATCG 59 26789557 26789577 CTGGTTGTAATTGTAGTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12071 FBgn0039808 FBtr0085716,FBtr0085717 2 2 2 161 3R 26705208 26705226 CAACTGACCTACAACATCC 57 26704954 26705083 CTTGTTGGTGGACTTTGAG 58 NA Drosophila melanogaster 50 aralar1 FBgn0028646 FBtr0085695,FBtr0085692,FBtr0085694,FBtr0085693 2 4 4 80 3R 26274281 26274365 CTAGTTTCGGTAACTGAGGG 59 26274220 26274238 CAGTTCCATGTTGTTCAGC 59 NA Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085631,FBtr0085634 1 4 5 240 3R 26212044 26212062 CAGCGATCTGATCAATGTG 58 26211760 26211778 CTTCTTGAGAGTGGTCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34300 FBgn0085329 FBtr0112496 3 1 1 129 3R 26132009 26132080 GCAGTATCTTGCAGATCGA 59 26131898 26131917 GGAATCGATTCTAGAGTGCA 59 NA Drosophila melanogaster 50 CG34133 FBgn0083969 FBtr0110888 2 1 2 81 3R 25695763 25696966 CCGTGATAGGACCTAATAGC 59 25697010 25697028 GCATCTGTCTCAATGACCT 59 NA Drosophila melanogaster 50 SP1029 FBgn0040282 FBtr0085400,FBtr0085398,FBtr0085399 2 3 3 106 3R 25071030 25071112 TACAAGTTCTACCATCCGC 59 25070942 25070961 TTCACGAAGTCCTTGAACTC 59 NA Drosophila melanogaster 50 spz FBgn0003495 FBtr0085141,FBtr0114372,FBtr0085144,FBtr0085142,FBtr0085137,FBtr0085138,FBtr0085145,FBtr0085146,FBtr0085140,FBtr0085143,FBtr0112834,FBtr0085139 2 12 12 64 3R 22891842 22891860 ACGATGAGTACAAACAGGC 59 22891729 22891747 GAAGTCACAGGGTTGATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17191 FBgn0039473 FBtr0085152 2 1 1 60 3R 22844564 22844583 ATCCGTAACGTATTACGTGG 59 22844523 22844541 GTGACACTTGATCGTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 malpha FBgn0002732 FBtr0084956 2 1 1 60 3R 21836769 21836787 TTCAAGAAGCAACAGAAGC 58 21836811 21836829 CGGATTCTAGCGATTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LpR1 FBgn0066101 FBtr0113480,FBtr0084925 3 2 6 156 3R 21575100 21577790 TATAAATGAGGCCACTTGCT 59 21573919 21573938 ATATTCATCCGGTGAACAGG 59 NA Drosophila melanogaster 50 CG5028 FBgn0039358 FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290 2 5 5 107 3R 21507673 21507691 ACATGACCAATCTGTACGG 59 21507762 21507839 CAAAGATGGCGTAATGGTC 58 NA Drosophila melanogaster 50 Fur1 FBgn0004509 FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986,FBtr0089983 2 6 6 80 3R 21183224 21183305 CAGGATAACTACGATCCCA 57 21183162 21183180 GTCCGTCATATCGTAATGC 58 NA Drosophila melanogaster 50 CG10560 FBgn0039325 FBtr0084852 3 1 1 84 3R 21144643 21144664 GAACTACTCTAAGAAACTGCCA 59 21144517 21144599 TATAGAGCAAATGAAGGCCC 59 NA Drosophila melanogaster 50 CG10513 FBgn0039311 FBtr0114505 2 1 1 60 3R 21101739 21101757 GGCCATATTGACCAATGAC 58 21101697 21101715 GTCATCCTTCATCAAAGCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11878 FBgn0039310 FBtr0084821 1 1 1 60 3R 21099578 21099599 GAAATCTACCCACAAAGTTCAC 59 21099620 21099638 ATCCTGCACATATTCCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13615 FBgn0039199 FBtr0084617 3 1 1 150 3R 20216975 20216993 GTACGGAACCTACTACTGC 59 20217106 20217191 GTAATTAAACATGGTGGCCA 58 NA DesignRelaxed Drosophila melanogaster 50 CG17780 FBgn0039197 FBtr0084621 1 1 3 93 3R 20209177 20209259 GTATTTACACTGGATGAGCAC 58 20209104 20209122 AACTCAATGGACAATGGCT 59 NA Drosophila melanogaster 50 cav FBgn0026257 FBtr0084557,FBtr0084558,FBtr0084556 1 3 4 83 3R 20048171 20048189 TGATTCTATGGATGCACGA 58 20048297 20048315 AAAGCTCCTTTACCTCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Syx1A FBgn0013343 FBtr0084588 3 1 1 60 3R 19929342 19929360 TCATGATACTGATCTGCCT 57 19929300 19929319 TAACTGCTAACATATGAGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10365 FBgn0039109 FBtr0084447,FBtr0084448,FBtr0084446,FBtr0084449 2 4 4 108 3R 19554818 19554837 TATTCGAGGATATGTTCGCC 59 19555685 19556379 AGTGATTCCCTCTTTGTCC 58 NA Drosophila melanogaster 50 CG13408 FBgn0038929 FBtr0084179 1 1 1 80 3R 17907607 17907625 GAATAATGTGGAGGGAGCT 58 17907669 17907986 TTGTGCCTCAGATAGTCAC 58 NA Drosophila melanogaster 50 CG6560 FBgn0038916 FBtr0084151 2 1 1 72 3R 17712036 17712054 AAGACCACGATACTGAAGC 59 17711919 17711937 TGATGTTAAATCCTGCCGT 59 NA DesignNoJunction Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 2 22 22 85 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202453 17202548 GTTCAGGAATACGATAGCG 57 NA Drosophila melanogaster 50 CG34008 FBgn0054008 FBtr0100063 1 1 1 84 3R 16406880 16406898 ATCACATTGATACCAGCAG 57 16406746 16406764 TTAAATATCGTGCATGGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5191 FBgn0038803 FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905 3 5 5 89 3R 16396363 16396821 TGTCGACAGGTAAATCCTC 58 16396873 16396892 TATCACGTTGTCTATCTCCC 58 NA Drosophila melanogaster 50 CG4323 FBgn0038797 FBtr0083891,FBtr0083892 2 2 2 80 3R 16327293 16327370 CAGATTAGGAGATCTATCGAAGG 59 16327235 16327255 TCATAGTGCATCATGGTAACC 59 NA InUTR Drosophila melanogaster 50 CG4836 FBgn0038762 FBtr0083828 3 1 3 158 3R 15842472 15842555 AAAGGATGACAGAATAGGCA 58 15842676 15842694 TCGTAGGGATTCGTTATGC 59 NA Drosophila melanogaster 50 CG4538 FBgn0038745 FBtr0083855,FBtr0083856 2 2 2 91 3R 15725519 15725605 CTCTATAATGGAACAACTGCTG 58 15725449 15725467 CTTTAACATAGTCGGCGGT 59 NA Drosophila melanogaster 50 CG11779 FBgn0038683 FBtr0083750,FBtr0100549,FBtr0083749,FBtr0100548 3 4 4 81 3R 14981620 14981638 CTCGTCATGAGCGATAGTG 59 14981490 14981508 AGAACTTGGAGTCCTTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34283 FBgn0085312 FBtr0112479 1 1 1 60 3R 14547965 14547983 AATGATTGTCCAGACCGAG 59 14547923 14547941 AAGGCAACTCATCACTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fru FBgn0004652 FBtr0083651,FBtr0083649,FBtr0083643,FBtr0083652,FBtr0083648,FBtr0083642 2 6 13 84 3R 14256555 14256573 CCAGACGGACAATATCGAC 59 14252824 14252843 ATGATTTCGATCCAGTTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18598 FBgn0038589 FBtr0083569 3 1 1 64 3R 14077109 14077127 TGATCGAGACCAAGTTGTG 59 14077154 14077173 GTAATTCCACAGATCCCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7379 FBgn0038546 FBtr0083529 2 1 1 153 3R 13622782 13622800 AGTTGGTGGCAATAATTCC 57 13622586 13622665 AAAGGAGATCTGATTGCAG 57 NA Drosophila melanogaster 50 pxt FBgn0038538 FBtr0083507 3 1 2 108 3R 13547153 13547235 TTAACACGATTAGGAGATGGC 59 13547305 13547323 TTAGTTCGTGTAGTGCACC 59 NA Drosophila melanogaster 50 kuk FBgn0038476 FBtr0083398,FBtr0083397 3 2 2 60 3R 12908691 12908709 TGGCAAAGATAAGTCACAG 57 12908731 12908751 AGATTTCTCTACCTTCTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14891 FBgn0038445 FBtr0083302,FBtr0083301 1 2 2 60 3R 12398522 12398542 CAGAACTTTACAACGCTACAC 59 12398563 12398582 CCAGAAACTCCAAGGTAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dhfr FBgn0004087 FBtr0083295,FBtr0110910 3 2 2 60 3R 12307241 12307259 TGAACATAGTGCTGAGCAC 59 12307282 12307301 CACAATAGTACTCCCTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17929 FBgn0038415 FBtr0083270 2 1 1 60 3R 12151663 12151682 TTAACCATGACCTTCCTACC 58 12151754 12151773 TCAATTGCATTAGACCTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG6125 FBgn0038337 FBtr0083105,FBtr0083106 3 2 2 88 3R 11229093 11229168 TTAAACAGCATGAATCCACG 58 11229024 11229042 CAACTCAGATCGTAGTGCA 59 NA Drosophila melanogaster 50 Trax FBgn0038327 FBtr0083093,FBtr0083092 2 2 2 60 3R 11188345 11188364 TATGGCGTAAGATCACTACC 58 11188387 11188405 TTGTAGCAAACATTCTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7262 FBgn0038274 FBtr0083008 3 1 1 213 3R 10722102 10722184 ATGTTAACAGTGGACTCTTCC 59 10721909 10721927 CTTAACGATCCACCTAGCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14853 FBgn0038246 FBtr0082960,FBtr0082961 1 2 2 114 3R 10442724 10442908 CAAATTGATCCTGCAATACG 57 10443042 10443060 ATTGTAGTTCTCATCGCTG 57 NA Drosophila melanogaster 50 CG14840 FBgn0038217 FBtr0082952 1 1 1 115 3R 10086798 10086816 GAATGACAAGCAATGCCTG 59 10086701 10086721 CTTTCTTCGAATTAGGTTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Abi FBgn0020510 FBtr0112896,FBtr0082910 1 2 2 97 3R 9946183 9946424 ATCAACAGGAATCACTTCAG 57 9946105 9946123 AAGTCTTGATGCTCATCCT 58 NA Drosophila melanogaster 50 CG14357 FBgn0038204 FBtr0082913 2 1 1 60 3R 9937689 9937707 ACTACGGAACTTTGATGCT 58 9937647 9937665 TGGTTGATTTGAAGGAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yellow-e FBgn0041711 FBtr0082757 2 1 1 83 3R 9236553 9236571 GGTTTGACTTTCGATGAGC 59 9236111 9236129 GACATTCTTATGCACGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG31342 FBgn0051342 FBtr0113404,FBtr0113403 1 2 2 80 3R 8813014 8813032 TATGCTTACCGAGAATGGA 57 8813075 8813170 AAATTTAGGACTTGATCGGC 58 NA Drosophila melanogaster 50 Men FBgn0002719 FBtr0082660,FBtr0082661 2 2 2 179 3R 8539998 8540016 CTCTTGGTATTGCCAACCT 59 8539781 8539799 AAGTATCGATGGGTTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Cyp9f2 FBgn0038037 FBtr0082599,FBtr0082598 1 2 2 89 3R 8229403 8229421 CAGCCATTCACATACTTCC 58 8229275 8229293 GTAGATAACAGCCTTTGCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG14736 FBgn0037986 FBtr0089692,FBtr0089690 1 2 3 135 3R 7867673 7867745 CTACAAGAGCAGGTACTGG 59 7867906 7867924 GCAGGACTCTGTTTAACAC 58 NA Drosophila melanogaster 50 HisCl1 FBgn0037950 FBtr0082470 1 1 3 129 3R 7614623 7614644 GGTGTTTGTATTCCTTTCTCTG 59 7614734 7614804 TAGTGCAGACTTTAGGTCG 58 NA Drosophila melanogaster 50 CG6666 FBgn0037873 FBtr0082372 3 1 1 60 3R 7035053 7035072 CAATGGTATTAGGCATCTCC 57 7035012 7035032 GTAAACCTCCTTGATCTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS29 FBgn0037752 FBtr0082137 2 1 2 100 3R 5604291 5604309 AGATTCTTTGATGGAACCG 57 5604373 5604391 ATGTTAAGGCCATACTTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9399 FBgn0037715 FBtr0082109,FBtr0082110 1 2 2 242 3R 5399132 5399150 TGTACAACGGGATGATTGG 59 5398350 5398368 TCTTGGGTATGATCACCAG 58 NA DesignNoJunction Drosophila melanogaster 50 AP-47 FBgn0024833 FBtr0082114 2 1 1 60 3R 5384455 5384474 TAAGTATCGCAAGAACGAGG 59 5384414 5384432 GTTTGCGAGAAGATTCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fps85D FBgn0000723 FBtr0082053,FBtr0082051,FBtr0082052,FBtr0082054 3 4 4 91 3R 5194240 5194258 TGATGTGGGAGATCTTCTC 58 5194104 5194186 CATACGATATCCCGTATCGA 58 NA Drosophila melanogaster 50 Rel FBgn0014018 FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338 1 4 4 60 3R 4870880 4870898 ACTACATACGACCTTTGCT 58 4870838 4870857 TTTCCGGCATTATTCTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ada2b FBgn0037555 FBtr0081807,FBtr0100368 1 2 2 80 3R 4063877 4063895 CATACCTCCAATGGAAGTC 57 4063748 4063833 TGACATTTCGACCTTTCTG 57 NA Drosophila melanogaster 50 CG7800 FBgn0037552 FBtr0081795 3 1 1 60 3R 4044172 4044190 CTTTAAAGGCCTAGCTCAG 57 4044212 4044232 CAAACCTTGAATACCATTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31284 FBgn0051284 FBtr0081754,FBtr0081755,FBtr0081753 3 3 3 238 3R 3720343 3723577 CAAATAACCGCTTCAAATCG 58 3723778 3723796 CTTCATCTGGTCGATCAGG 59 NA DesignRelaxed Drosophila melanogaster 50 Sp7 FBgn0037515 FBtr0081740,FBtr0081742,FBtr0081743 2 3 4 92 3R 3586989 3587741 ACAAGGAAGTTGTAGGAATCC 59 3587795 3587813 TAAGACTGCTGAATCACGG 59 NA Drosophila melanogaster 50 CG10055 FBgn0037482 FBtr0081605 3 1 1 172 3R 3011470 3011544 CTGAGTGAGTTGGACAGAG 59 3011316 3011335 TAGCGTAAAGGATTCTGGTG 59 NA Drosophila melanogaster 50 CG1104 FBgn0037467 FBtr0081643,FBtr0081644 3 2 2 138 3R 2897574 2897646 GGTATCACGATTTGGTCCT 59 2897454 2897472 TTAGAAATCGATGCACGTG 58 NA Drosophila melanogaster 50 CG1104 FBgn0037467 FBtr0081643,FBtr0081644 1 2 2 137 3R 2897573 2897645 GTATCACGATTTGGTCCTG 57 2897454 2897472 TTAGAAATCGATGCACGTG 58 NA Drosophila melanogaster 50 Ama FBgn0000071 FBtr0081619,FBtr0081620,FBtr0081618 3 3 3 65 3R 2589588 2589607 TCTTATATTCTGCCTTGCGA 58 2589635 2589653 CTGATCTGGCTGATCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15186 FBgn0037448 FBtr0081674,FBtr0081673,FBtr0081672 1 3 3 96 3R 2319012 2319030 GTTAACCAGATCCCTGGAC 59 2319089 2319280 CAACTCGTCCATATTTGCAG 59 NA Drosophila melanogaster 50 CG1041 FBgn0037440 FBtr0081734,FBtr0110774 3 2 2 103 3R 2198947 2199031 GGAATTTGACCAAGAACTCC 58 2198863 2198881 CAAGGGAATGGTCTTCTGG 59 NA DesignRelaxed Drosophila melanogaster 50 Hr83 FBgn0037436 FBtr0081713 3 1 1 65 3R 2175559 2175579 TTTATGGAGTCCCTAATCCTG 58 2176039 2176057 CAGGATAACGGCATACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17919 FBgn0037433 FBtr0081711 3 1 1 62 3R 2170307 2170325 CAGGTTAAGGATCAGCCAG 59 2170351 2170369 AATGAGCGTGTAGAACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 jagn FBgn0037374 FBtr0078624,FBtr0078626,FBtr0078625 1 3 3 97 3R 1605870 1605888 CGAGACAGACATCTTTGTG 58 1606011 1606029 AGTACAGCGTAAATCCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14662 FBgn0037291 FBtr0078846 2 1 1 60 3R 808369 808388 TCAGGGAAGATTTGAGAAGG 59 808094 808113 GTCAATAGTAGCAATCGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40400 FBgn0058400 FBtr0111160 3 1 1 73 3L 24524624 24524642 TTTGCTTATACCCGTTCAC 57 24524186 24524205 TGAACACATTCAGTTAGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nAcRalpha-80B FBgn0037212 FBtr0113189,FBtr0089255 2 2 2 81 3L 23262559 23262578 AATATCGATCGACTCGTGTC 59 23262622 23271328 ATTCGCCGTAATGTTTCCT 59 NA Drosophila melanogaster 50 CG33214 FBgn0053214 FBtr0078388 3 1 1 88 3L 21497149 21497167 CCTGTGGAAAGAACATCGA 59 21494016 21497097 ACAGTGAATCACCTTTCCG 59 NA Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0100238,FBtr0100237,FBtr0078257 3 3 10 189 3L 20809757 20809775 CACATGTCCTACATGATGG 57 20809928 20825958 GTTTGACTTGTTCCCTCTC 57 NA InUTR Drosophila melanogaster 50 polo FBgn0003124 FBtr0100318,FBtr0074839 2 2 2 142 3L 20305703 20305789 TCTGTGCAGCTAAACTTCTC 59 20305893 20305912 TACAAGTCTTTAGACACGCC 59 NA Drosophila melanogaster 50 CG7290 FBgn0036949 FBtr0074858 3 1 1 72 3L 20198599 20198617 GAACAACTATCCATGCAGC 58 20198545 20198563 AAGATTGCATAGGTTGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fln FBgn0005633 FBtr0074910 3 1 1 144 3L 19983177 19983257 GAATATCAGTGGCAGTGAC 57 19983051 19983069 TTACTAAAGGACACTGGCA 58 NA InUTR Drosophila melanogaster 50 CG6836 FBgn0036834 FBtr0075023 2 1 1 80 3L 18947755 18947835 TCCAGATACATGGTATGGC 58 18947878 18947897 AATGTCCCGGTAGTATAGGA 59 NA Drosophila melanogaster 50 CG6311 FBgn0036735 FBtr0075208 3 1 1 68 3L 17520436 17520455 AAATGGCTCAGTGTAAATCG 58 17520332 17520350 AACCTCATTAATGCCACAC 57 NA DesignNoJunction Drosophila melanogaster 50 rogdi FBgn0036697 FBtr0075283,FBtr0075282 2 2 2 86 3L 17045160 17045179 AAGTTCATACTCACCGTGTC 59 17045228 17045832 AAAGCTAATGTCAGCCTGG 59 NA Drosophila melanogaster 50 Exn FBgn0027593 FBtr0075271,FBtr0075273,FBtr0075272 3 3 3 191 3L 16983971 16984124 CATTCGTAGATGACTCAGAC 57 16984278 16984296 AATCATCCGAAATGACCAC 57 NA Drosophila melanogaster 50 Aats-tyr FBgn0027080 FBtr0075410 1 1 1 197 3L 16411296 16411314 TAGATCCCATTCGAAAGGC 59 16411055 16411073 GCACATATAGAGTATCGGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG13059 FBgn0036607 FBtr0075371 1 1 1 102 3L 16317194 16317212 TTAAGACTGTGGTCTCCTC 57 16317278 16317296 ATCACGGTCTTGATAACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf4 FBgn0010280 FBtr0114589 2 1 5 191 3L 16107926 16108769 ACCAAGACCATCAATCAGG 59 16108921 16109143 GCTTAAAGTTATCGATGGACTC 58 NA Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0075438,FBtr0112850,FBtr0075439 1 3 6 83 3L 16070897 16073864 AGAAGAGCTCAAGCAACTC 59 16073908 16073929 CTAATTACTCTAATCAACGCGG 59 NA Drosophila melanogaster 50 th FBgn0003691 FBtr0075499,FBtr0075501,FBtr0075500 2 3 3 60 3L 16033060 16033078 TTGTAGCTGATCTTCCGTC 59 16033018 16033036 TTCGTGTTGTTATCCACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7304 FBgn0036527 FBtr0075577,FBtr0075576 2 2 2 60 3L 15673543 15673561 GACGAACAGACTTTAGCCT 59 15673585 15673603 AGCTCCAATCGTACATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eig71Ek FBgn0014851 FBtr0075575 1 1 1 139 3L 15654551 15654572 GAATAGGACGATTTGATGAGAC 58 15654728 15654746 CATATCATCACAGCGTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 Eip71CD FBgn0000565 FBtr0075553,FBtr0075552,FBtr0075555,FBtr0075554 1 4 4 68 3L 15505789 15505807 CATAACCACTGAGATTGCA 57 15505898 15505916 AACCTATACTTCTGGTGGT 57 NA DesignNoJunction Drosophila melanogaster 50 Hsc70-1 FBgn0001216 FBtr0075761,FBtr0075762,FBtr0075763 2 3 3 60 3L 13970261 13970279 GGAATACTCAATGTGACGG 57 13970301 13970321 TGATAGTGATACGGTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10171 FBgn0036353 FBtr0075865,FBtr0075864 2 2 2 224 3L 13379874 13379892 AGTGTCAACCTGATTTCCA 58 13379606 13379624 GCTAGGCGATATGTAAGCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 MICAL-like FBgn0036333 FBtr0075898 3 1 1 60 3L 13007565 13007586 AAGACAACCACTACTGATTCTC 59 13007526 13007545 AGTAATCAGAACTTTGTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32064 FBgn0052064 FBtr0076288 3 1 1 60 3L 10484291 10484310 TGTTCTGAAGTCAGTAGTCC 58 10484330 10484351 GGTACGTATTTGGATCAAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12303 FBgn0036083 FBtr0076294 2 1 1 60 3L 10424767 10424786 TTGTGGGAATATCATCACCT 58 10424726 10424746 GTTTGTCATAAGATCCTCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32056 FBgn0052056 FBtr0076303,FBtr0076301,FBtr0076302 1 3 3 85 3L 10214550 10214568 TTCTTCGGCATCAATTTCC 58 10214222 10214501 AACATGGCATCTATGAGGA 58 NA Drosophila melanogaster 50 Cpr66D FBgn0052029 FBtr0076567 3 1 1 213 3L 8633926 8633944 ATCGGTCAGGGATTATCAG 58 8636163 8636181 GAATCCAAACTGGTACGAG 57 NA DesignNoJunction Drosophila melanogaster 50 Gug FBgn0010825 FBtr0076619,FBtr0076618 1 2 4 80 3L 8463408 8463429 CCAAATATGCTTATACCTAGGG 57 8463467 8463539 CTGTAAATACTGTAGTTGGTCG 58 NA Drosophila melanogaster 50 Gug FBgn0010825 FBtr0076619,FBtr0076618 1 2 4 80 3L 8463408 8463429 CCAAATATGCTTATACCTAGGG 57 8463467 8463539 CTGTAAATACTGTAGTTGGTCG 58 NA Drosophila melanogaster 50 CG13672 FBgn0035862 FBtr0110798 2 1 1 102 3L 8242038 8247971 ATATGTCATAAGAGCCGAGAC 59 8248035 8248053 ATTGTTGGAGAACTCGACG 59 NA Drosophila melanogaster 50 bip1 FBgn0026263 FBtr0076745 2 1 1 123 3L 8048536 8048991 CATTGAACTTGTTGAGAGCC 59 8048432 8048450 GTTTATGGACAGCACATCG 58 NA Drosophila melanogaster 50 Clk FBgn0023076 FBtr0100132,FBtr0076785 2 2 3 172 3L 7761742 7761819 AATCATAATGAGGCCACCG 59 7761588 7761607 GAGGTAATACTTTCCGAGGC 59 NA Drosophila melanogaster 50 Hn FBgn0001208 FBtr0100225,FBtr0076811 3 2 2 115 3L 7755646 7755730 AATTGTCCACCATCTTCTGG 59 7755808 7755826 GAGGCAATACTCCAGTTCC 59 NA Drosophila melanogaster 50 lqf FBgn0028582 FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794 1 6 6 80 3L 7527254 7527341 GCAGGATTTCAAGGATCCA 59 7527383 7527403 AGCAGATCTAGCAAATGACTC 59 NA Drosophila melanogaster 50 bhr FBgn0082598 FBtr0076849,FBtr0076848 2 2 2 72 3L 7365559 7365578 GATGCCTTTGTCAAGTTCAC 59 7365613 7365692 TTTACGACAGGTAGCTAGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG8629 FBgn0035742 FBtr0076925 3 1 1 201 3L 7121277 7121296 AAGAACTTCTCCAAGAAGCC 59 7121095 7121113 ACTTCTCGTACACCTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14910 FBgn0035700 FBtr0076965 1 1 1 79 3L 6455164 6455182 GTTCCTTCTCTGCCTACTC 59 6455225 6455243 TTATTGTCTTGGCAAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10625 FBgn0035612 FBtr0113144,FBtr0077140,FBtr0077139 1 3 7 80 3L 5538118 5538136 AATTCTCGACATTGACGAC 57 5537032 5538076 CCATACCTATAGGCATTTGTG 58 NA Drosophila melanogaster 50 Src64B FBgn0003501 FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321 2 5 5 158 3L 4596190 4596208 ATCTGAGCTTCATGAAGGG 59 4595932 4596069 TCTCAAAGAACCAGTCTTCG 59 NA Drosophila melanogaster 50 CG7465 FBgn0035551 FBtr0073306 2 1 1 167 3L 4480849 4480868 CTCCTTCCAACGAGTATCTG 59 4480998 4481016 TCTTGTAACGGTAACCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15022 FBgn0035547 FBtr0073333 3 1 1 63 3L 4459959 4459978 ATTGATCTGCACTATCAGCC 59 4459915 4459933 GGATATCGAACTTGGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1295 FBgn0035509 FBtr0073222 2 1 1 84 3L 4204734 4204753 ACATTGAACTTGAACCTGAC 58 4205226 4205244 GATCGTACAGAGGCTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14995 FBgn0035497 FBtr0073272,FBtr0073271 3 2 4 160 3L 4096937 4096957 CCCATGTATAACACCATAACC 58 4095864 4095980 TGGTAGTATTCCTTCATCGA 57 NA Drosophila melanogaster 50 CG14971 FBgn0035449 FBtr0073143 2 1 1 66 3L 3469319 3469398 GTAATTGGAATCGAAGGTGC 59 3469272 3469290 CATTCGAAGTGTGGTTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996 3 6 15 82 3L 3083796 3085208 TCGCCACTTATATGGTCAC 59 3085252 3085272 ATATGGTGCATAGAAGTTGGG 59 NA Drosophila melanogaster 50 Shab FBgn0003383 FBtr0072974,FBtr0110776,FBtr0072975 1 3 4 67 3L 2925425 2925443 GAAGTATCTGTGGGAGCTC 59 2925474 2940796 ATATCACTGCGATAACCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG12093 FBgn0035372 FBtr0073015 2 1 1 69 3L 2773115 2773133 ATTAGCTACTCCCATCTGC 58 2773006 2773024 AATAGGTGCCATATTCAGC 57 NA DesignNoJunction Drosophila melanogaster 50 scf FBgn0025682 FBtr0089942,FBtr0089940,FBtr0089941 3 3 3 60 3L 1299623 1299641 TGGTTATTTGAACGAGGAG 57 1299665 1299683 CGAATGATCGAAGTCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32335 FBgn0063667 FBtr0072636 1 1 1 60 3L 1202472 1202490 GGATGAACTCACTCAAGGA 58 1202430 1202448 AACACAATCCTCATTCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 thoc7 FBgn0035110 FBtr0072527,FBtr0072526 1 2 2 145 3L 212559 212635 TAGTGGAGATGAATGACGA 57 212367 212450 GTACATGATGGGATTGCTG 58 NA Drosophila melanogaster 50 5SrRNA:CR33354 FBgn0053354 FBtr0086346 1 1 1 62 2R 15653375 15653393 AATACATCGGTTCTCGTCC 59 15653331 15653349 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33410 FBgn0053410 FBtr0086402 1 1 1 62 2R 15632696 15632714 AATACATCGGTTCTCGTCC 59 15632652 15632670 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 emp FBgn0010435 FBtr0072400,FBtr0072402,FBtr0072401 1 3 3 88 2R 20865282 20865300 GACAACATGTGCTTCTGTC 59 20865154 20865230 ATGGGAGAGTCGTATTGAC 58 NA Drosophila melanogaster 50 Eps-15 FBgn0035060 FBtr0072433 2 1 3 94 2R 20657197 20659257 CGACAATAAGAACCAGAGGA 59 20657122 20657140 CCTTCCGAGTTCCAATCTC 59 NA Drosophila melanogaster 50 sei FBgn0003353 FBtr0072169,FBtr0072170 3 2 2 80 2R 19938359 19938378 GTTCCTAATCGATCTCGTGG 59 19938419 19938499 ATTAAGGTAGTTGTCTCGTCG 59 NA Drosophila melanogaster 50 CG30183 FBgn0050183 FBtr0072099 1 1 1 117 2R 19580472 19580490 GAACCGGAATCTTTCTCGT 59 19580315 19580392 GGAAGTATTATTGGGCACCT 59 NA Drosophila melanogaster 50 CG5431 FBgn0034888 FBtr0072080 1 1 2 80 2R 19571965 19571983 ATGTCCGGATACAAGAGGT 59 19572024 19572096 TTACTTCCGAGTGATCTTTCAG 59 NA Drosophila melanogaster 50 CG4019 FBgn0034885 FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103 1 4 4 213 2R 19495764 19495782 TCGAGTTCGTAATCACCTC 58 19495489 19495507 TAGATCCAGTTGCTCTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG30193 FBgn0050193 FBtr0071948,FBtr0071949,FBtr0071946,FBtr0071944 2 4 7 76 2R 18813126 18814633 GGCTTATAATATTGTTCTGCGG 59 18814670 18814688 CTTGACATCCTTGGTCCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG30193 FBgn0050193 FBtr0071948,FBtr0113364,FBtr0071945,FBtr0071949,FBtr0071946,FBtr0071947,FBtr0071944 1 7 7 69 2R 18814926 18814944 TTGTATCGCAAATTCGTGC 59 18815045 18815063 CCTGATTCACGTACTCGTC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 PIP5K59B FBgn0034789 FBtr0110862,FBtr0071900 2 2 3 166 2R 18767409 18767427 CTGGATACATTACTGGCGG 59 18767555 18768010 GTTAGTTGATCGAGATCACCA 59 NA Drosophila melanogaster 50 CG13530 FBgn0034777 FBtr0071915 3 1 1 167 2R 18664574 18664592 TCACCATTTCTCCTATGGC 59 18664084 18664443 TTTCGCAGATCATTTGGTG 58 NA Nonspecific Drosophila melanogaster 50 CG13506 FBgn0034723 FBtr0071822 1 1 1 80 2R 18274024 18278495 CAACTATACGTGAGTTGTGC 58 18278538 18278556 GTACTCATACTCGTCGTCC 58 NA Drosophila melanogaster 50 Tango11 FBgn0050404 FBtr0071747,FBtr0071746 3 2 2 61 2R 17604978 17604996 GGGAGAAGATCGTCTACTG 58 17604935 17604955 CAGCCAGAATATTGTCTTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10307 FBgn0034655 FBtr0071671 3 1 1 79 2R 17577352 17577370 CGATCTACAGCTAATGGCT 58 17577471 17577489 GACCATCGCAAATATTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30287 FBgn0050287 FBtr0071695 1 1 1 112 2R 17425317 17425335 ATAATCATCGAACGTGGGA 58 17425109 17425179 AAACGCACTGTCAATTGAC 59 NA Drosophila melanogaster 50 CG13442 FBgn0034546 FBtr0086240 1 1 1 85 2R 16616808 16617429 TAATCCCGAACAACTCGTG 59 16616741 16616759 TGCTAATCCAACACTCCAG 59 NA Drosophila melanogaster 50 CG18065 FBgn0034519 FBtr0100677 3 1 1 84 2R 16439217 16439294 GCAATGAGATTATGCACCA 58 16439151 16439169 ATCTTCTGCAGATTCTGGT 58 NA Nonspecific Drosophila melanogaster 50 CG18067 FBgn0034512 FBtr0086216 1 1 1 60 2R 16422163 16422184 GAATATACAGCGAAATGAGGAC 59 16422205 16422223 TGATAGGAAGGTGTTTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7097 FBgn0034421 FBtr0086504,FBtr0086503 1 2 2 80 2R 15099768 15103930 CAAGAGCTTCATAGGTACG 57 15103972 15103992 CATAGTTGATTATAGCCACCC 57 NA Drosophila melanogaster 50 CG15118 FBgn0034418 FBtr0086590,FBtr0086589 2 2 5 126 2R 15024322 15024463 TCGACCAGAACGATAAGGA 59 15024214 15024232 TACTCATAGGTCGCATTGC 59 NA Drosophila melanogaster 50 CG15118 FBgn0034418 FBtr0086590,FBtr0086592,FBtr0086589,FBtr0113096,FBtr0086591 3 5 5 61 2R 15023834 15023852 CGCTCTTACATCTTCAAGG 57 15023724 15023742 GTATCGTGATCGATCTCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG18605 FBgn0034411 FBtr0086571 1 1 1 62 2R 14865568 14865586 ATGTATCGGTGCTGATCAG 59 14865612 14865630 TCTTGATGGTCTCGTACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30114 FBgn0050114 FBtr0086753 1 1 1 71 2R 14095518 14095536 ATAATATTCGCAACCGCTG 58 14095571 14095589 TAATCAGCAGACTGTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lolal FBgn0022238 FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778 1 4 4 80 2R 14042986 14043404 TCACAGATGTAACACTCGC 59 14042924 14042942 TAAAGTAGGGACTGCAAGC 59 NA Drosophila melanogaster 50 CG14487 FBgn0034272 FBtr0086865 2 1 1 60 2R 13632114 13632132 CAACCATATTCGACAAGGA 57 13632156 13632174 TCGGGCATAACAGTAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33459 FBgn0053459 FBtr0089859 1 1 1 81 2R 12376135 12376226 GAATATACAGTTGCCATTCGTC 59 12376268 12376286 CTACAGAATCCACAAGCCA 59 NA Drosophila melanogaster 50 Dg FBgn0034072 FBtr0087258,FBtr0087257,FBtr0087256 1 3 3 100 2R 11972593 11972678 TTTATGGCCTACCTCTGGA 59 11972511 11972529 ACTTATCTCCACGGTTTCC 58 NA Drosophila melanogaster 50 CG8397 FBgn0034066 FBtr0087261 2 1 1 123 2R 11903960 11904043 GAGAGCAGTGGAAGATCAC 59 11903855 11903874 TCGATCTCCTTCTTTGTCTC 58 NA Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 2 5 7 81 2R 11836642 11836721 TTTGCTACGTGCTACTCTC 59 11836579 11836599 TCCGCTCTAGTTATATTCGAG 58 NA Drosophila melanogaster 50 CG12970 FBgn0034047 FBtr0087289,FBtr0087288 2 2 2 60 2R 11744153 11744171 AGGTGATGGAGATTATCGG 58 11744194 11744213 TTCTGGAGACGATCAAACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30084 FBgn0083919 FBtr0113484,FBtr0111048,FBtr0100387,FBtr0087315 3 4 6 157 2R 11652754 11660560 ATAATGTGTACCGAGGTGC 59 11651322 11652635 GATAAAGGGTCCTCTGATCTG 59 NA Drosophila melanogaster 50 mus210 FBgn0004698 FBtr0087373,FBtr0087374 1 2 3 111 2R 11200223 11200241 AAGTCAACGCGAATAAAGC 59 11200316 11202134 ATAGATCTGCATCTGCCAC 59 NA Nonspecific Drosophila melanogaster 50 mRpL41 FBgn0034001 FBtr0087400 2 1 1 60 2R 11104807 11104825 TTCCGGACATCATAGTTCC 58 11104765 11104783 TTATAGGACACGTATGGCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10249 FBgn0027596 FBtr0087429,FBtr0112929,FBtr0087431,FBtr0087430 1 4 4 88 2R 10790219 10790298 GACAGTAATGGCAACACAG 58 10790149 10790167 TCGCAAACCTTAGAATCCA 58 NA Drosophila melanogaster 50 shot FBgn0013733 FBtr0087620,FBtr0087618 1 2 6 126 2R 9789035 9789056 TATCGGGCTTATGAAGAATCTC 59 9770041 9788951 GAATACTGCTTGATCTAGTTCG 58 NA Drosophila melanogaster 50 drk FBgn0004638 FBtr0087693,FBtr0087697,FBtr0087698,FBtr0087696,FBtr0087694,FBtr0087695 2 6 6 81 2R 9385034 9385133 TCTCCTTATCAGTCAAATGCC 59 9384973 9384991 ACCCAGAGGAAGAATTTGC 59 NA Drosophila melanogaster 50 CG17059 FBgn0040754 FBtr0087739 2 1 1 95 2R 9107891 9107909 AAACATGAAACCGTCTCTG 57 9108278 9108296 ATCATCATTCCTGTGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13148 FBgn0033767 FBtr0087848,FBtr0087847 3 2 2 114 2R 8575267 8575285 GTAGCTTTACAGAGGGCAG 59 8575421 8575439 TTATGCCACTTCTTCTGCA 59 NA DesignNoJunction Drosophila melanogaster 50 nemy FBgn0033765 FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875 2 6 6 194 2R 8558847 8559072 AAGCGGATGAGGAAATCTG 59 8558671 8558690 CTCTGTACGCTTATAGTCCC 59 NA InUTR Drosophila melanogaster 50 fdl FBgn0045063 FBtr0087946,FBtr0087947 2 2 2 131 2R 8376192 8376277 GAAAGAAGCAGGTACTGGG 59 8376079 8376098 GATCATCGCTAGGATCAGTC 59 NA Drosophila melanogaster 50 CG8290 FBgn0026573 FBtr0088041 1 1 2 80 2R 7861949 7861968 ATTCAACAGTATTGACGAGC 58 7862011 7862111 TACTCGCAAGCATAATTGG 57 NA Drosophila melanogaster 50 pyr FBgn0033649 FBtr0113070 3 1 1 176 2R 7611521 7611808 CTGGTTGGAAAGAGAAACG 58 7611946 7611966 CAATATGGCCTTCTTCATCAC 59 NA Drosophila melanogaster 50 ix FBgn0001276 FBtr0088154 1 1 1 60 2R 7247233 7247251 GAGATCCACTTGAAGACGG 59 7247191 7247212 GATAGTGATTGGAGGAGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12391 FBgn0033581 FBtr0088205 3 1 1 60 2R 7036371 7036390 CATCTGTCCTAATGTCTCGA 58 7036330 7036348 CTTGGTGCATATGAATTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 3 12 12 93 2R 6499952 6500255 GCATATGGACATGTATAACTCG 58 6500309 6500327 ATTCGTATAGTGCGGTTCC 59 NA Drosophila melanogaster 50 CG11777 FBgn0033527 FBtr0088273 1 1 1 80 2R 6356435 6356716 CCATTAAGCACACTGATCG 58 6356760 6356778 AGGTAATGAAGAACTGGCT 58 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 3 9 9 198 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349188 6349206 CTTAGTACAGTCCACAGCC 59 NA DesignRelaxed Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414 2 10 10 71 2R 5991854 5991872 TGTCGACAGTCGATAAGGA 59 5991904 5992232 TATCATCGTAACGTTCTGACTG 59 NA DesignRelaxed Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414 2 10 10 71 2R 5991854 5991872 TGTCGACAGTCGATAAGGA 59 5991904 5992232 TATCATCGTAACGTTCTGACTG 59 NA DesignRelaxed Drosophila melanogaster 50 Pka-R2 FBgn0022382 FBtr0088438,FBtr0088437,FBtr0088439 2 3 5 218 2R 5885776 5885794 GAACGCATCATCAAACAGG 59 5884113 5885213 CTTGACATCGAGGAATGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 3 9 9 68 2R 5738998 5739016 CTTTGAGTTGAATGGCCAG 59 5738880 5738966 ACATGGATCTCCTTAACGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG1663 FBgn0033449 FBtr0088477 2 1 1 60 2R 5725284 5725304 GTCGCTATCCAAAGTACTACC 59 5725326 5725344 ACTGATATGTGGTTCGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or45b FBgn0033422 FBtr0088519 2 1 1 81 2R 5447862 5447939 GCCAATAAGAGATCCCTCG 59 5447984 5448002 TATCTCATTGTGGCGATCC 59 NA Drosophila melanogaster 50 CG8029 FBgn0033393 FBtr0088587,FBtr0088588 2 2 2 212 2R 5095662 5095680 CAAGACCTACTACACCAGC 59 5095928 5095946 TTGCTGATAGCAGCTATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30381 FBgn0050381 FBtr0113374 1 1 2 106 2R 3818098 3818176 CGTTTGAAGAGGTTAAATGC 57 3818011 3818029 GTAATCTTTGGTGTACCGC 58 NA Drosophila melanogaster 50 mus205 FBgn0002891 FBtr0088831 3 1 1 159 2R 3681476 3681494 TTCCGTATGACAAGAAGGA 57 3681617 3681692 TAGCCATAGAAGGGTATGC 58 NA Drosophila melanogaster 50 esn FBgn0028642 FBtr0089039,FBtr0089038 1 2 2 161 2R 3012688 3012927 TGCGATGAGATCATCTTCTC 59 3013051 3013069 GAACATTGTGTCGAAGCAG 59 NA Drosophila melanogaster 50 pgant3 FBgn0027558 FBtr0089061 2 1 1 120 2R 2945818 2945893 TACGACATGGATACTCAGC 58 2945716 2945734 AGTCGCATTCCATACTGAG 59 NA Drosophila melanogaster 50 CG33558 FBgn0053558 FBtr0113470 2 1 2 148 2R 2814317 2816022 ACTTTGACGACTATGCCAC 59 2814187 2814205 GTTGATGAGATTTCGCACG 59 NA Drosophila melanogaster 50 CG14593 FBgn0033058 FBtr0085975 2 1 1 94 2R 1952490 1952508 GACATCAAGTCCTACCCTG 59 1952565 1953388 ACCATGAACTTTGCATACTC 58 NA Drosophila melanogaster 50 CG11163 FBgn0025693 FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053 3 4 4 80 2R 1662572 1662645 TGCATCTCGTTACAGACTC 59 1662510 1662530 TATATCTTGGGCTGGATACGA 59 NA Drosophila melanogaster 50 CG40005 FBgn0058005 FBtr0111236,FBtr0111235 2 2 2 60 2L 22842481 22842499 TGATAGCTCCGTAACATCC 58 22842439 22842457 AAGAACTTGATCGAACTCC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3651 FBgn0032974 FBtr0085937 1 1 1 106 2L 22123585 22123603 CAGCTTAATAGCAACCGGA 59 22123673 22123750 GATTGAGGAGCTGTAGACC 59 NA Drosophila melanogaster 50 CG15219 FBgn0040519 FBtr0085944 2 1 2 138 2L 22105223 22105241 GAGTAATTGCGGACAAGGT 59 22105055 22105122 TTCCATTGGAGAGTAAAGCC 59 NA Drosophila melanogaster 50 CG41435 FBgn0084002 FBtr0111261 3 1 1 90 2L 22055935 22055953 TTTAATGGACGAATGCGAG 58 22056007 22056910 CGTCCTCATTAAACTGGGA 58 NA DesignRelaxed Drosophila melanogaster 50 sick FBgn0085372 FBtr0112547 3 1 3 185 2L 19928973 19928994 CATATCCCAAGAAGAATGACGA 59 19929343 19950416 GTGAACTTACATTGGTTGACAG 59 NA Drosophila melanogaster 50 spi FBgn0005672 FBtr0081271,FBtr0081269,FBtr0081268,FBtr0081270,FBtr0100597,FBtr0081272,FBtr0081267 2 7 7 63 2L 19568717 19568735 CCTGGTACTGTTTGAACGA 59 19568672 19568690 CTGTAAACCGGTAGATCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 amd FBgn0000075 FBtr0081153 3 1 2 288 2L 19110628 19110646 AGTCCTTGGATTCAGTTGG 59 19113045 19113063 AATGCAGCTGTTACTCTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31742 FBgn0051742 FBtr0081025 2 1 1 60 2L 17991189 17991210 GTATATCATGCTACCATGACAG 58 17991229 17991249 CCATGTGATATAGTCTCACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080898,FBtr0080895,FBtr0080903,FBtr0080902,FBtr0080901,FBtr0080896,FBtr0080899,FBtr0080900 1 8 13 84 2L 16771130 16771351 CCGGTGTTAAAGACATTTGTC 59 16771397 16771415 ATACTGGCTACAGTGACCT 59 NA Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080878,FBtr0080876 1 3 7 188 2L 16483962 16483981 TCTGCATACGGTTTATACCA 58 16481537 16483811 TTGATCGATAGGCATCTGG 58 NA Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876 2 7 7 116 2L 16467746 16468063 AAACTATTCCGAATCCCTGG 59 16467649 16467667 TTCTTGTAGTATGCCGTCG 59 NA Drosophila melanogaster 50 CG34168 FBgn0085197 FBtr0112359 3 1 1 208 2L 16135165 16135183 CTACTTCCGTAATCAGGCT 58 16134908 16134926 AACAATGTCCACCATACGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CycE FBgn0010382 FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775 2 5 5 97 2L 15729492 15729577 TACATTTAGTCGGGAGATGG 58 15729414 15729432 AGATCACTCGGAAGAATGG 58 NA Drosophila melanogaster 50 CG15279 FBgn0028886 FBtr0080686,FBtr0080685 3 2 3 186 2L 14847047 14848681 GATGAAAGGTGTTGGAGCT 59 14846879 14846897 AGACCAATTACTCGCATCG 59 NA Drosophila melanogaster 50 rk FBgn0003255 FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610 1 4 5 131 2L 13991706 13992947 GTGGTCGTCCTAGATTTGG 59 13991010 13991029 ATAGAATGCATTGGGATCCA 58 NA Drosophila melanogaster 50 CG9008 FBgn0028540 FBtr0080577,FBtr0080576 2 2 2 154 2L 13775381 13775399 GAATCCTTGGATCGATCGA 58 13775038 13775266 CGATGATAATCTGAAGGATCTG 58 NA Drosophila melanogaster 50 ab FBgn0000011 FBtr0080204,FBtr0080203 1 2 2 201 2L 11258905 11258989 AGAATACATTCGGCATGGG 59 11259154 11259172 ATCGGCTCAATGGTTAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 dUTPase FBgn0013349 FBtr0080157,FBtr0080156 2 2 2 86 2L 11011760 11011778 TCGTCCTGTTCAATCACTC 59 11011828 11011846 GATAGAAGATACGCTCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Art8 FBgn0032329 FBtr0080162 3 1 1 62 2L 11010050 11010068 AAATCACAATGAAGCGCAG 59 11010006 11010024 CTAGCAAATCCACCTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nos FBgn0011676 FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486 2 9 10 161 2L 10831341 10831359 TGTCACAGGATTATCGGTC 58 10826070 10830602 TCGAGCAGGAAAGAATCTC 59 NA Drosophila melanogaster 50 Nos FBgn0011676 FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486 1 9 10 160 2L 10831340 10831358 GTCACAGGATTATCGGTCG 59 10826070 10830602 TCGAGCAGGAAAGAATCTC 59 NA Drosophila melanogaster 50 CG5037 FBgn0032222 FBtr0079992 3 1 1 112 2L 10332576 10332594 CTATTGTCGGACTTTCAGC 58 10332670 10332752 ATGAAACTTGTACGCAAGG 58 NA Drosophila melanogaster 50 CG5640 FBgn0032207 FBtr0080077,FBtr0080075,FBtr0080076 3 3 3 80 2L 10275747 10275765 TGCTTTCCTAGCATATCGC 59 10275618 10275705 TGATATAAGACGCCGATTGAG 59 NA Drosophila melanogaster 50 Dh31 FBgn0032048 FBtr0079700,FBtr0079699 3 2 2 72 2L 8493009 8493027 TCATGGAACTGATGACTCG 59 8492791 8492974 GTTCGTTTGGAATTCTCCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13384 FBgn0032036 FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079658 3 4 6 228 2L 8385087 8386225 ATACAGTCAGTATTCCCGAG 58 8386516 8386535 TTATAGGACTTATCCGTCGA 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CSN8 FBgn0028835 FBtr0079646 1 1 1 80 2L 8365313 8365394 GTGGAGGATCTTCTAAATAAGC 58 8365435 8365453 ATTGTGCTGGTAAATGGAC 57 NA Drosophila melanogaster 50 Btk29A FBgn0003502 FBtr0079616,FBtr0112836,FBtr0079617 1 3 6 140 2L 8298082 8298100 TTCAGCTACTTCGATGTGG 59 8284050 8284128 TTGGAACGGATAACCATCC 59 NA Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079623 3 1 4 94 2L 8244491 8244644 AGCGTTGTGTAAACCTCTC 59 8244415 8244433 AAACTCGGTGTTCTTCTCG 59 NA Drosophila melanogaster 50 CG8372 FBgn0032000 FBtr0079634,FBtr0079633 1 2 2 61 2L 8212168 8212186 TTATTAAGACCTGGCTGCC 59 8212125 8212143 ATAGATGCCCAGAATGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8455 FBgn0031997 FBtr0079588,FBtr0079587 1 2 2 89 2L 8200026 8200113 TTATGCTGGCCACTATAACC 59 8200162 8200183 CACTCAGATAGCTATTGAAGAC 58 NA DesignRelaxed Drosophila melanogaster 50 CG5973 FBgn0031914 FBtr0079446,FBtr0079448,FBtr0079447 2 3 3 127 2L 7444741 7444759 GATCTCCCATATTGAGGCG 59 7444849 7444935 TGTCAGCCAGTTCATAATCC 59 NA Drosophila melanogaster 50 DLP FBgn0031820 FBtr0079260 3 1 1 73 2L 6486099 6486177 ATGAAGAGAATCGCCTACG 59 6486213 6486232 TAAAGATCATTCTTTCGGCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG9144 FBgn0031773 FBtr0079215 2 1 1 91 2L 6063890 6063908 ACTCGGATGTGGTTAACAG 59 6063763 6063835 TCGCCAGACCTTAATTGTG 59 NA Drosophila melanogaster 50 ade2 FBgn0000052 FBtr0079220,FBtr0079219 1 2 3 116 2L 6044340 6044435 CATTCCAGGTTACAAACAGC 59 6044243 6044261 TTATTTCCGTAGTCGGAGG 58 NA Drosophila melanogaster 50 CG11030 FBgn0031736 FBtr0079135 2 1 1 93 2L 5759281 5759299 AGCCCGTTTATTACGATGG 59 5759356 5759440 AGCATGGAAGACGTAATGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14011 FBgn0031722 FBtr0079118,FBtr0079120,FBtr0079119 3 3 3 85 2L 5580631 5580649 AGTCAACTCATTGGACGAG 59 5580564 5580582 TTGTCTTGGTCGACTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tutl FBgn0010473 FBtr0089269,FBtr0089270,FBtr0089268,FBtr0089271 2 4 4 174 2L 4295611 4299075 CAATATTCCAGAAGACGCC 58 4303359 4303377 CGGATAGCTCTCATACCAG 58 NA Drosophila melanogaster 50 Gr23a FBgn0041248 FBtr0077702 2 1 2 183 2L 2671791 2671867 AAAGCTATAATCTAGGCCGG 59 2672012 2672086 GCTGCAAACATACTACTCAG 58 NA Drosophila melanogaster 50 CG34172 FBgn0085201 FBtr0112363 3 1 1 122 2L 2192827 2192848 CAGTTACATAAGAGACCTAGGC 59 2192664 2192682 AAATCTTATCCGCAGGTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 lectin-22C FBgn0040105 FBtr0077859 1 1 1 60 2L 2033699 2033718 CAACTATCAAAGTGGCTCTG 58 2033658 2033676 CAGTACGTGAGGAAGAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33128 FBgn0053128 FBtr0077930 2 1 1 60 2L 1495204 1495223 TTACATCCAAACCTACACCG 59 1495246 1495264 GATATCGGTGAAGGTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 a5 FBgn0011294 FBtr0077922 3 1 1 60 2L 1329683 1329701 ATAAGCTGGACTTTGACGA 58 1329724 1329743 AAATTACTATGACCATCGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GluRIIC FBgn0046113 FBtr0078026,FBtr0078027 3 2 2 140 2L 917374 917471 CTTTGGAAGAAAGGCTCAC 58 917575 917593 TATCCAATGATCTTCGCGG 59 NA Drosophila melanogaster 50 Plc21C FBgn0004611 FBtr0078047,FBtr0078048,FBtr0078051,FBtr0078050 1 4 5 96 2L 344409 344427 GAAATCCAGTCCGCTAGAG 59 344484 344570 CGGAGAAAGACAATTAAGACTC 58 NA Drosophila melanogaster 50 CG3625 FBgn0031245 FBtr0078136,FBtr0078135,FBtr0113009 2 3 3 117 2L 284780 284798 TATCGACAGGGAGCTAGTC 59 284144 284162 GTACGAGATGAACAGCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11376 FBgn0031216 FBtr0078103 1 1 1 80 2L 97767 97787 CAATTAAGCGAATCGTACACC 59 97828 97897 ATCTATGGACAGCTCTTTGC 59 NA Drosophila melanogaster 50 l(2)gl FBgn0002121 FBtr0078166,FBtr0078171,FBtr0078170,FBtr0078167,FBtr0078168,FBtr0078169 1 6 6 80 2L 14976 14996 ATTATGTGCCTTATGGACCTG 59 14858 14937 CAATTACATCGTTGGATCTTCG 59 NA Drosophila melanogaster 50 CG40500 FBgn0069968 FBtr0111196 3 1 4 160 X 22291650 22291670 GATACAGTTGTGTTCACAGGA 59 22292859 22294276 TTGTCAAGGATTGACTGGG 59 NA Drosophila melanogaster 50 CG17601 FBgn0031197 FBtr0077361 1 1 1 69 X 21949467 21949485 CTAGAGGTTGACATGCTGG 59 21949518 21949536 GATTCTTGGCATTCTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15446 FBgn0031155 FBtr0077261 3 1 1 117 X 20972940 20973054 CGAAGCTGCTAGAATTATCCA 59 20972843 20972861 CATTTGGCGATACGAAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 xmas-2 FBgn0028974 FBtr0074404 1 1 1 88 X 17051534 17051613 AGTATGAGTTGGTGGAAGTG 59 17051465 17051483 ATTGAGGTAGAGGTCTCGT 59 NA Drosophila melanogaster 50 CG4756 FBgn0030788 FBtr0074331 1 1 1 62 X 16682326 16682344 ACTTCAAGGTCCAAACGAG 59 16682367 16682612 GTTTCATAATTGTATCCGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9123 FBgn0030629 FBtr0074019 3 1 1 137 X 15235279 15235297 CAACATTGCCTGGATTTCC 59 15235007 15235119 ACTTTGATTTGACCAGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14406 FBgn0030595 FBtr0073977 3 1 1 100 X 14804732 14804750 GATGTGATAACAGGAACGG 57 14804344 14804668 CTTAGATCCGATGGATCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11095 FBgn0030528 FBtr0073827 1 1 1 71 X 13706075 13706159 GCACGAATGAAATATCCCT 57 13706194 13706212 AGGAGATCTGAAAGCTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1745 FBgn0030301 FBtr0073500,FBtr0073499 1 2 2 81 X 11349154 11349172 TATTAATCCGGTGGACACC 58 11349217 11349325 CTCCAGGAGGTCATTTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sev FBgn0003366 FBtr0073393 2 1 1 85 X 10972705 10972723 ACTTAGCCGATTACGACTG 59 10972572 10972657 AAATCGGAACCTGTATTGTG 58 NA Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0071296,FBtr0112965,FBtr0071294,FBtr0071298,FBtr0071295,FBtr0071297 3 6 6 108 X 9009732 9009803 CAATGTAGTAGTGCCTCCA 58 9009875 9009893 CATATAGATGCGCATGCAG 58 NA Drosophila melanogaster 50 l(1)G0155 FBgn0026664 FBtr0071093 3 1 1 122 X 7814714 7814732 CAAACTATTCGCGTTGAGC 59 7814817 7814925 AAAGTCATGAACTCGTTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10804 FBgn0029663 FBtr0070592,FBtr0114487 3 2 3 117 X 3373349 3373427 AATAGTGCTTCCGGAACAG 59 3373250 3373268 CGATTCCCAGGGTAAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Actn FBgn0000667 FBtr0070343,FBtr0070344,FBtr0070345 1 3 3 105 X 1924397 1924489 ATCTGTCGTTCAAGGATGG 59 1924310 1924329 AGATTCTCCAGAGGATTGTC 58 NA Drosophila melanogaster 50 CG34320 FBgn0085349 FBtr0112522 2 1 1 75 X 1057904 1057922 ACTACTCGTAGATCGGAGG 59 1057743 1057761 AAACGAATGCATTTCCTCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17691 FBgn0039993 FBtr0113759,FBtr0113758,FBtr0113761 1 3 4 71 U 1179200 1179275 GGTGTTCAGTAAATCTACGG 57 1179309 1179327 TTCCTTGCTCACATAAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sphinx FBgn0083990 FBtr0111044 3 1 3 93 4 996101 996121 CGAGAGTACTATTAATGCGAG 57 996176 997397 TACACAAGATGGAGAAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1890 FBgn0039869 FBtr0085836 1 1 1 84 3R 27569554 27569627 GAGAAGACTGCAGAAGGAG 59 27569672 27569693 CTTCTTATACGAATCTGTCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fer2LCH FBgn0015221 FBtr0085622,FBtr0085624,FBtr0085623 1 3 3 71 3R 26214996 26215017 GATGAATATTGCCAGAACACTG 59 26215049 26215435 ATTACAAATGGAGTTGGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trc8 FBgn0039668 FBtr0085431,FBtr0085430,FBtr0085432,FBtr0085429 2 4 4 94 3R 25325969 25326048 CTGCTATCAGGAAATGTATTCC 58 25325896 25325914 AACGATCCTGAACGTACAG 59 NA Drosophila melanogaster 50 CG11839 FBgn0039271 FBtr0084766 2 1 1 109 3R 20895743 20895911 AGCATTGGTTTCCTTAACTG 58 20895982 20896001 TTATATGCACCTTCCAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34349 FBgn0085378 FBtr0112558,FBtr0112559 3 2 2 84 3R 20889764 20889782 TATCTTTCGCAGATCTGGA 57 20889827 20889909 GATTCGGAATCTGTATACTCTG 57 NA Drosophila melanogaster 50 CG5768 FBgn0039198 FBtr0110867,FBtr0084620 2 2 2 113 3R 20212174 20212192 CTATAATGGACGTGACTGC 57 20212017 20212097 TTTGGCAAGCTGAATATGG 58 NA Drosophila melanogaster 50 CG10830 FBgn0038839 FBtr0083986 2 1 1 287 3R 16722461 16722479 TTAAGTTCCGGAAGCTGTC 59 16722192 16722211 ACTCATTGTAGTGGTTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11407 FBgn0038733 FBtr0083790 3 1 1 113 3R 15607737 15607807 TCCAGTCATTCCTTAACCA 57 15607884 15607902 TATAATACGCTTGGTGCTG 57 NA Drosophila melanogaster 50 CG8774 FBgn0038136 FBtr0082740,FBtr0082741 1 2 2 135 3R 9125212 9125230 TAACTTTGACGGAAGAGCT 58 9125329 9125481 GAAATGGTTCTGGTAGCTC 57 NA Drosophila melanogaster 50 CG14693 FBgn0037837 FBtr0082300,FBtr0082301 1 2 2 116 3R 6638726 6638802 CTCCAGTGTCTGAATATAAAGG 57 6638631 6638649 AAATGTTGATCTCACGGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG34360 FBgn0085389 FBtr0112576,FBtr0114582,FBtr0114583,FBtr0112577 3 4 5 263 3R 5769244 5769262 ACTATCTGGAAACATGCCG 59 5769578 5769596 TGTAGTCGATGACAATGCC 59 NA DesignNoJunction Drosophila melanogaster 50 hyd FBgn0002431 FBtr0082090 1 1 1 85 3R 5540875 5540954 CAGGATTTGGTTTACTTCTGG 58 5540810 5540828 CTTATGGTGACAGATGGCA 59 NA Drosophila melanogaster 50 CG9356 FBgn0037688 FBtr0082048,FBtr0082047 3 2 2 158 3R 5228689 5228707 ATGTAATCAGCCTAAGTGC 57 5228480 5228567 TAATGAATTCCAAGGCCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17919 FBgn0037433 FBtr0081711 2 1 1 75 3R 2169965 2170264 GTTAAAGGTCACGTACAGC 58 2170303 2170321 CTGATCCTTAACCTGGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi4 FBgn0037412 FBtr0078615 3 1 1 73 3R 2045634 2045944 AAAGATGATGTACCAGTTCCC 59 2045581 2045599 CTCCATGAAGCGGATAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12581 FBgn0037213 FBtr0078961,FBtr0078962 3 2 2 159 3R 8508 8527 ATTAGCACAGTCCCTAATCG 59 8648 9456 GTTTAAATGTCCTTTGCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 mael FBgn0016034 FBtr0089631,FBtr0089633,FBtr0089632 2 3 3 118 3L 22718018 22718092 AGATGTCCCATGATCTGGA 59 22718174 22718192 CAACGAATATTCGCATGCC 59 NA Drosophila melanogaster 50 Ten-m FBgn0004449 FBtr0078509,FBtr0112842 3 2 2 142 3L 22294409 22295907 CCTTTAACGAAAGTCGATCAG 59 22294287 22294305 CATTAGGTCGAACCATCCA 59 NA Drosophila melanogaster 50 CG5976 FBgn0036999 FBtr0078200,FBtr0078199 3 2 2 68 3L 20468596 20468682 AGATATCCTACAATCCCAGC 58 20468712 20468731 GCTTATCGGATAGATTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14087 FBgn0036868 FBtr0074996 2 1 1 61 3L 19380826 19380844 ACAAGCAGGATGAATTCCA 59 19380869 19381039 CTTTGGGTCACGTCTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18231 FBgn0036796 FBtr0075104 2 1 1 80 3L 18601499 18601573 CATATTCGGCATGATCAAGTC 59 18601615 18601633 GCCTTATTCAGAGCTTCGT 59 NA Drosophila melanogaster 50 CG13467 FBgn0036455 FBtr0075696 2 1 1 101 3L 14897987 14898006 ATATGTGTTCTCCATGGACG 59 14898070 14898221 CACACTAACTTGAAGGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsc70-1 FBgn0001216 FBtr0075761,FBtr0075762,FBtr0075763 2 3 3 60 3L 13970261 13970279 GGAATACTCAATGTGACGG 57 13970301 13970321 TGATAGTGATACGGTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14113 FBgn0040814 FBtr0075837 3 1 1 92 3L 13322332 13322402 AGAGGTATACACGGAGGAG 59 13322457 13322476 TATCTGAGTGCATACTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PGRP-LC FBgn0035976 FBtr0089490 3 1 3 214 3L 9338151 9338710 AAAGACGTTGAACCAAACG 59 9338955 9338973 CCATGTGAAACGATTGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6416 FBgn0035917 FBtr0089564,FBtr0089566,FBtr0089565,FBtr0089562 3 4 8 141 3L 8623725 8627690 TTCAATACCAACCCTACCG 58 8627795 8627813 CTGTCATGGTAGTCGTGTC 59 NA Drosophila melanogaster 50 CG6683 FBgn0035902 FBtr0076655 1 1 1 109 3L 8507732 8507808 ATTCAGAAGCTAGTGCCTG 59 8507641 8507659 CAGAAGACTCCAATCGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13670 FBgn0035873 FBtr0076708 2 1 1 196 3L 8314151 8314169 CTATGCAAGATTCGAGGGT 59 8314329 8314905 GATCGACTACGCTGTACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Srp9 FBgn0035827 FBtr0076750 3 1 1 69 3L 7929587 7929605 AAGAACTGGGATGATTTCG 57 7929638 7929656 TAAGTCGACAGTTCTGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8620 FBgn0040837 FBtr0076918 2 1 1 264 3L 7151308 7151328 GTGAATTTCTTATCGGGTCAG 58 7151554 7151572 AGAGTTGAGATTCCTGCTG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 melt FBgn0023001 FBtr0100141,FBtr0076917 2 2 2 90 3L 7135157 7135240 GTTTCCTCAGGTTAAGGACC 59 7135293 7135311 CTTGTCTGTCTTGGAGACC 59 NA Drosophila melanogaster 50 CG13296 FBgn0035687 FBtr0076997 2 1 1 63 3L 6156741 6156759 TTCTCCTTATGGGCATTCC 59 6156785 6156932 CACATGTAGCGACTATTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12027 FBgn0035585 FBtr0073372 3 1 1 123 3L 5011903 5011921 CTGAAGGAAGTCACTGAGC 59 5011743 5011818 GTAGATCATCAACCGAAATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33514 FBgn0053514 FBtr0091456 3 1 1 61 3L 4365740 4365759 CGGACTATTTCCGAGTTACC 59 4365783 4365860 ACCCGTTTGATGAATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scrt FBgn0004880 FBtr0073165 1 1 1 85 3L 3985479 3986530 ATGTTTACAACGGCTACAC 58 3986579 3986597 GATCACGGTTATCTCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13907 FBgn0035173 FBtr0072593 2 1 1 60 3L 879209 879227 CACCATGTTGGATGTTAGC 58 879167 879185 ATTCGAGACTCCGATAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 thoc7 FBgn0035110 FBtr0072527,FBtr0072526 2 2 2 81 3L 212492 212512 GAGGATCGGAGAATAGTAGTG 58 212366 212449 CGTACATGATGGGATTGCT 59 NA Drosophila melanogaster 50 gsb FBgn0001148 FBtr0072444 2 1 1 172 2R 20949718 20950767 CTTTCAAGGACAAGGTCGT 59 20950901 20950921 GGTTTAGAATCTTTGAGACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4324 FBgn0034956 FBtr0114534,FBtr0072197 1 2 2 114 2R 19903665 19903743 GTTCCACAGTCAGTTACCT 58 19903511 19903529 CTAGGACCACTTCAAAGCA 59 NA Drosophila melanogaster 50 CG3906 FBgn0034871 FBtr0072121 2 1 1 219 2R 19399297 19399316 CTTCCATTGCATCATACTGC 59 19399006 19399115 GTTAATGTTGGCCTTGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30190 FBgn0050190 FBtr0113362,FBtr0113363,FBtr0071950 2 3 3 120 2R 18817485 18817503 TGAGGCCAAGAAATCAGAC 59 18817586 18817724 ATGTTGTAGTTGAAATCGCC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 px FBgn0003175 FBtr0112821,FBtr0112820 1 2 3 83 2R 18428467 18430837 AAGGCATCTCATAAACCGG 59 18428402 18428420 AACGAAAGTGGTTCTTTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13492 FBgn0034662 FBtr0071741,FBtr0071742 2 2 2 93 2R 17715211 17715301 AGACACGCATCATAAGTGG 59 17715136 17715154 CAGTTTCCTGTTCCATCGA 59 NA Drosophila melanogaster 50 sli FBgn0003425 FBtr0087303,FBtr0087304,FBtr0112832,FBtr0087302,FBtr0112831 2 5 5 98 2R 11764742 11764760 GACATCGGAGCTGTATCTG 59 11764593 11764680 TTGTTGCTGAGATCGAGTC 59 NA Drosophila melanogaster 50 Cyp6a22 FBgn0013773 FBtr0087450 3 1 1 61 2R 10760328 10760346 TATGATTCCATGCAGGAGC 59 10760371 10760456 TACTTCCGAAGGGTTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13331 FBgn0033850 FBtr0087672,FBtr0087673 2 2 2 277 2R 9409608 9409821 AGAAGACCAGACTGAGAGG 59 9410061 9410080 GTGTTCCATGTTATAGGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hr46 FBgn0000448 FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367 2 4 4 111 2R 6095624 6095704 CAATTTCCGCGATATTTCC 57 6095531 6095549 CGAATCTATCGAGAACAGC 57 NA Drosophila melanogaster 50 Mef2 FBgn0011656 FBtr0088444,FBtr0088443,FBtr0088447,FBtr0088445,FBtr0088446 2 5 6 89 2R 5806136 5806225 TATGCAGATCAACGACAGAG 59 5806066 5806084 AAAGGAATAGCTCGTGAGG 59 NA Drosophila melanogaster 50 Vang FBgn0015838 FBtr0088566 2 1 1 129 2R 4991311 4991396 TAATATGACAGGAGACGGC 58 4991489 4991507 CATTGAGATGCTTTGCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8635 FBgn0033317 FBtr0088727 3 1 1 129 2R 4518513 4518590 CCACCACGGATATTATTTGC 59 4518403 4518421 TTCAGCACATATCCAGCTG 59 NA Drosophila melanogaster 50 CG30373 FBgn0050373 FBtr0088806 2 1 1 60 2R 4051709 4051727 ACTTGTACGAGCATGTCAG 59 4051667 4051687 TTGTACCTGTAGTTGACAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Odc2 FBgn0013308 FBtr0088864 3 1 1 111 2R 3896299 3896374 TGGATAAGATATCGGACTTGC 59 3896445 3896465 TCGAATCCATTAAAGGGACTG 59 NA Drosophila melanogaster 50 CG12824 FBgn0033222 FBtr0088830,FBtr0113050 3 2 2 293 2R 3678002 3678080 GGAATTATCCTACGCATTTGG 59 3678388 3678406 ATAGAATGCCATTCCGAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 scw FBgn0005590 FBtr0081261 2 1 1 61 2L 19700827 19700845 CGAGATGCCCATATACCAG 59 19700784 19700804 CCAGGATATCAATCATCTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10337 FBgn0032805 FBtr0081276 2 1 1 71 2L 19546119 19546203 GGTATAATCGGTTGTGCTC 57 19546066 19546086 GCCACTGTTGATGAAATACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CadN2 FBgn0032655 FBtr0081012,FBtr0110886 1 2 2 80 2L 17789384 17789403 CACTGCAAATACCAATCAGC 59 17789245 17789343 TCATCACGGGATAGATTATGG 58 NA Drosophila melanogaster 50 CG5888 FBgn0028523 FBtr0080880 2 1 1 147 2L 16404602 16404620 AGTATCTGGACCACTTTGC 59 16400514 16404491 TCCTCAACGGGATATTCCT 59 NA Drosophila melanogaster 50 CG4930 FBgn0028515 FBtr0080824 1 1 1 60 2L 16258165 16258252 GAGAAAGTAGCACAGAACG 58 16258275 16258294 TTTGGTAATCCTTAACGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33648 FBgn0053648 FBtr0091625 3 1 1 178 2L 14524982 14525054 CGTAAGTATAGTTGAGTTCACC 58 14525252 14525273 CATTATATCGCTTGTATAGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7364 FBgn0028541 FBtr0080532 2 1 1 108 2L 13773314 13773392 GCTATACGGGTCTTATGGT 58 13773464 13773482 TAGTCGATCTTCACAGCTC 58 NA Drosophila melanogaster 50 CG7311 FBgn0028848 FBtr0080530,FBtr0080529 2 2 2 60 2L 13709780 13709799 AAATCTTGTGGACTATGCGA 59 13709821 13709840 CTAACTTCAAGTCCTGTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33643 FBgn0053643 FBtr0091620 2 1 1 118 2L 13531339 13531357 AAGGTCGATTAGATGCCTG 59 13531439 13531509 GAAGTTCGCTTTCAGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4988 FBgn0032372 FBtr0080254 3 1 1 98 2L 11695109 11695127 CCTATATGGGTGGTACCCT 59 11695189 11695293 CCTCAACGTTCCTAGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6724 FBgn0032298 FBtr0080191 1 1 1 128 2L 10768574 10768659 GATCCTAGGACAAACCAGG 59 10768464 10768482 GTTCTGGTTGTCATAAGCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4537 FBgn0032153 FBtr0113031 1 1 1 63 2L 9890999 9891017 AATCAACGAGAACAAGGCT 59 9891044 9891062 TAAAGCAGTCCCTATGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34398 FBgn0085427 FBtr0112648,FBtr0112649 1 2 2 85 2L 8927410 8927428 CATAGATAGTGCCGACGTC 59 8927477 8927560 TGGTGATTCCACTATCCCT 59 NA Drosophila melanogaster 50 CG7219 FBgn0031973 FBtr0079549 1 1 1 97 2L 8005559 8006448 CTCAATCCCGACTACAGAC 59 8005480 8005498 ATATTGTATCGTGCTGTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13983 FBgn0031792 FBtr0079285 1 1 1 125 2L 6264288 6264363 AATGCCTTCTCCAAGATCG 59 6264181 6264199 ATCCGATTCCTGATTCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15425 FBgn0031591 FBtr0077471 2 1 1 70 2L 4258160 4258238 TTTCATAGTGCTTGCAAACG 59 4258271 4258289 TTACTCATGTACGTGGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Got2 FBgn0001125 FBtr0077868 2 1 3 234 2L 1986087 1986797 TATCAACATGGTTCTCCGAG 59 1985810 1985828 TTGTAGAACTCGGGAATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15446 FBgn0031155 FBtr0077261 3 1 1 65 X 20972437 20972457 CCGTTAAGATTAAAGTGGAGG 58 20972392 20972410 TGACCATCGAATCAGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8568 FBgn0030841 FBtr0074436 1 1 1 60 X 17344694 17344714 GCAGAAGAATACAACACTGAC 59 17344654 17344675 TTGATTCTTCTCCATCTCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nipsnap FBgn0030724 FBtr0074258,FBtr0074257,FBtr0074259 3 3 3 278 X 15965372 15965390 TCTTAGCTTGATGCAGGAG 59 15964886 15965070 TGCAGAGATTTGTAACACC 57 NA DesignRelaxed Drosophila melanogaster 50 CG12539 FBgn0030586 FBtr0073987 2 1 1 60 X 14738631 14738652 ATTGGTCAATCTCATAGAGCAG 59 14738536 14738557 ATAGTTGGATAGATCTCTGGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11245 FBgn0030388 FBtr0073646 1 1 1 60 X 12338729 12338749 TCACCGTTAATGTAGAGACTG 59 12338770 12338789 GGCAGCTTGAATATCTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4575 FBgn0029920 FBtr0071000 1 1 1 74 X 6844572 6844590 TACGGAAGAATATGGAGGC 58 6844847 6844865 TCGTAGTATGCGGTATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spz FBgn0003495 FBtr0085146,FBtr0085143,FBtr0085139 1 3 12 133 3R 22894894 22894912 TATCGCTGTTCAAAGTCCT 58 22892379 22892854 GTCCGTCCTATTAAAGAGGA 58 NA Drosophila melanogaster 50 CG4582 FBgn0039344 FBtr0084896 3 1 1 64 3R 21408426 21408444 CTACTTCCACCTGCATACC 59 21408380 21408399 ATTTCAATGGTCCTGTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nAcRbeta-96A FBgn0004118 FBtr0084681 1 1 2 116 3R 20335951 20336624 GATTCCGACAATGTGATACC 58 20335353 20335873 CTCCACAATCTCGTTATCCT 58 NA Drosophila melanogaster 50 Myo95E FBgn0039157 FBtr0100517,FBtr0084579,FBtr0084578,FBtr0100518,FBtr0100519,FBtr0100516,FBtr0100520 1 7 7 81 3R 19984736 19984819 TATACGAAGCGATCCTTGG 58 19984673 19984691 TTAGAACCACTGCGATGAC 59 NA Drosophila melanogaster 50 CG5315 FBgn0038984 FBtr0084283,FBtr0084284,FBtr0084282 1 3 3 82 3R 18370410 18370491 TAATTCTGATGGGCCTCCT 59 18370346 18370364 AAACTTTCCAGGGAACCAG 59 NA Drosophila melanogaster 50 CG7794 FBgn0038565 FBtr0083540 3 1 1 97 3R 13850105 13850189 TATCCTTCGCCTTCAATCTC 59 13850248 13850267 ACAATAAACGATACATCGGC 58 NA Drosophila melanogaster 50 CG34280 FBgn0085309 FBtr0112476 3 1 1 62 3R 13229376 13229394 GGCTCTTCTTAATCTAGCG 57 13229332 13229350 TTAATTCCGATTCTCGAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cher FBgn0014141 FBtr0089473,FBtr0089472,FBtr0089474,FBtr0089471 3 4 4 116 3R 12920031 12920106 AAGGCTGACATCAACTACC 59 12919933 12919951 TCCCTTGATGTGCTTATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG12783 FBgn0038448 FBtr0089666 3 1 1 74 3R 12438052 12438070 TTATGTTCGTCCTAGGGCT 59 12437939 12437957 TCATATTGCAACGGTTTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG34402 FBgn0085431 FBtr0112655,FBtr0112654 1 2 3 209 3R 8211982 8212000 CTTCACAGTCTCACATTGG 58 8212281 8212299 GAATGGCTGGCATTAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 stck FBgn0020249 FBtr0081845,FBtr0081846,FBtr0081844 3 3 3 224 3R 4184858 4184932 GCTGCTAACGATATGAACG 58 4185120 4185138 CTGATGATAGTGCGTCTCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31550 FBgn0051550 FBtr0078685,FBtr0113409,FBtr0078684 2 3 3 246 3R 1314708 1314728 ACTAAAGGAGGACAACATTGG 59 1314989 1315100 ACGTGGATTGTTCAAAGGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG13048 FBgn0036593 FBtr0075475 2 1 1 60 3L 16276606 16276625 ACTACAATCACTTCGATCCC 59 16276565 16276583 AAGTGGCTCAGATGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ATPsyn-b FBgn0019644 FBtr0076406,FBtr0076405 3 2 2 69 3L 9724142 9724161 AAGGAGACTCTCAACAAGTG 59 9724193 9724211 TCGTTTAGGCAGACTTGAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14826 FBgn0035750 FBtr0076833,FBtr0113151 3 2 2 60 3L 7227955 7227974 AAATCTCACGGAATTCATGG 58 7227995 7228015 CCCACTATTCTGGTAGATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr65Av FBgn0052405 FBtr0077024 2 1 1 74 3L 6132846 6132867 CCATACTAAGATACGACAACGA 59 6132683 6132701 TAACTCCATCACTGGTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ets65A FBgn0005658 FBtr0077054 1 1 2 97 3L 6096882 6105478 CTCTGCACTGTATTCCTCG 59 6107411 6107429 GATCATGTTTGATGCCCAG 58 NA Drosophila melanogaster 50 CG11347 FBgn0035542 FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141 2 6 6 226 3L 4419447 4419465 TATTAGGTCCACCCAGGAG 59 4419654 4419749 TGTTCTTGCTCTTCTGACTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG10855 FBgn0035461 FBtr0073185 3 1 1 60 3L 3804112 3804132 CAGATGGAGATGAAGCTACAG 59 3804072 3804091 TCTCGAAGTACAATTCGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sty FBgn0014388 FBtr0073145,FBtr0073146 3 2 2 92 3L 3403030 3403048 ATGGATCATGGATGCAGTG 59 3402956 3402974 TTAGTAGTCGGGACTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7879 FBgn0035235 FBtr0072827,FBtr0072826 1 2 2 204 3L 1564035 1564053 TTCGAAACTTCTTCTCGGG 59 1562881 1562899 CGAGCAGTCTCAATAACCT 59 NA DesignNoJunction Drosophila melanogaster 50 Sox14 FBgn0005612 FBtr0072158,FBtr0072157 3 2 2 60 2R 19871578 19871598 ATATTATACTACCCTCAGCCG 58 19871619 19871638 AGAGGTAAGTATTCAGACGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dcp1 FBgn0034921 FBtr0072223 1 1 1 64 2R 19776668 19776686 AACGATAAGGAGTTTGCCA 59 19776622 19776640 AGCAGTAGATTGGAACAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15086 FBgn0034374 FBtr0086649,FBtr0086650,FBtr0086648 2 3 4 60 2R 14569928 14569948 GATGCCGAATATTTCCATTCC 59 14569745 14569765 CAGAGTCTTGTAGATAATGCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG30492 FBgn0050492 FBtr0088913,FBtr0113382,FBtr0088914,FBtr0088915 3 4 6 90 2R 3538427 3538445 ATGCCATCTGTTAAGGCTC 59 3538499 3538583 CTATTCTAACCTTGGCCCG 59 NA Drosophila melanogaster 50 Dpit47 FBgn0033083 FBtr0086146 2 1 1 75 2R 2549313 2549331 AAGAAACGTTACGAGGAGG 59 2549256 2549274 GTTTCATGAAGAACGGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17082 FBgn0039994 FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289 3 6 6 91 2R 644085 644172 TTCTATTGGTCGATCAAAGGAG 59 644224 644242 CATTCTCTGAGGCTGACAG 59 NA Drosophila melanogaster 50 Ret FBgn0011829 FBtr0081496,FBtr0081494,FBtr0081493,FBtr0081492,FBtr0081495 1 5 5 88 2L 21184334 21184355 GAGCCTGTTAATGTTAAGATGG 59 21184212 21184288 CGATGAACCAACTTTAACTCAG 59 NA Drosophila melanogaster 50 CG10026 FBgn0032785 FBtr0081237,FBtr0081236,FBtr0081238 1 3 3 86 2L 19457160 19457237 CTACTAGTGACCTCCATGC 58 19457287 19457305 AAATATCTTGAATGCCGCG 58 NA Drosophila melanogaster 50 CG10341 FBgn0032701 FBtr0113042 1 1 2 88 2L 18698898 18698917 GAAACAGCTGTTGAATTGGG 59 18698968 18699045 TTCGTAGCTTCTGTTGTCG 59 NA Nonspecific Drosophila melanogaster 50 Orc5 FBgn0015271 FBtr0080543 3 1 1 60 2L 13831260 13831280 GCCATTCTAGAGGAGAAAGTC 59 13831302 13831320 CCAAAGTTGAGATCTGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7311 FBgn0028848 FBtr0080530,FBtr0080529 3 2 2 60 2L 13709781 13709799 AATCTTGTGGACTATGCGA 58 13709821 13709841 TCTAACTTCAAGTCCTGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16800 FBgn0032462 FBtr0080417 2 1 1 60 2L 12967436 12967455 ACATCCACAAACTAGACGAG 59 12967478 12967496 TCATTGTGATCCTCATCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4705 FBgn0032339 FBtr0080195,FBtr0080196 2 2 2 93 2L 11092644 11092663 ACCCTATTTGTTCCTTCGTG 59 11092716 11092792 GTGACCAGTTCTATTTCATTGG 59 NA Drosophila melanogaster 50 CG6094 FBgn0032261 FBtr0080091 3 1 1 74 2L 10507462 10507480 GACTGGAGATCACCTACAG 58 10507518 10507536 CATCCACCTTGGTATTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9520 FBgn0032078 FBtr0079790,FBtr0079788,FBtr0079789 3 3 3 130 2L 8945117 8945371 CATACTCAATGAAGGTCGCT 59 8945006 8945026 CATCGTATGGCATGAATTCAC 59 NA Drosophila melanogaster 50 CG11266 FBgn0031883 FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638 2 7 7 117 2L 7036714 7036822 TTTATCACGTACCACAATGC 58 7036902 7036920 TATTCATGTCCAGTCGCTC 59 NA Drosophila melanogaster 50 CG9505 FBgn0031805 FBtr0079253 1 1 1 60 2L 6369132 6369151 GAAGGAACTGTATTCGTCAC 58 6369174 6369192 TCGTAGACGTAGTTCATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS10b FBgn0031035 FBtr0074732 3 1 2 106 X 19492109 19492199 GACGGGAGTATTACGATACG 59 19492495 19492513 AAGAGGTACTCGTAGATCG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15056 FBgn0030918 FBtr0074560 2 1 1 88 X 18309554 18309645 GAACTTCATCTCGTTCAGC 58 18309697 18309715 AGCTAATGCGAGACTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13005 FBgn0030794 FBtr0074334 1 1 1 60 X 16698013 16698109 TAGTCATCGATCGAAAGCG 59 16698133 16698151 GTTAATTGTTGCGTAGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2574 FBgn0030386 FBtr0073644 3 1 1 97 X 12303387 12303405 ATATACCACTGCAACGTGG 59 12303466 12303553 GAAAGTAGAACCTTGGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2260 FBgn0030000 FBtr0071194 2 1 1 271 X 8013632 8013650 CGTATGAGACTTCGAAGCA 59 8013317 8013398 AATAAACTCCTTTCGCTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14812 FBgn0026090 FBtr0070372 3 1 1 218 X 1752829 1752917 AAAGTCCTAGCGGAAATCG 59 1752418 1752436 GTCCTTCTGGATGACACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG41279 FBgn0085595 FBtr0114039 3 1 1 60 U 2221219 2221238 GATTGAAGCGACAATATGCA 58 2219705 2221196 TCTTCTTGGTGTATCGTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG1896 FBgn0039870 FBtr0085837 3 1 1 62 3R 27570647 27570728 TTTCTTGAAATTCGCTCCAC 59 27570752 27570771 TATAGAGGAGCCTCTTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12250 FBgn0039345 FBtr0084895 3 1 2 102 3R 21434507 21434594 GTTAAGAAAGAATCTGGTACCG 58 21419449 21419467 TGAAATCGCAATAATGGGC 58 NA Drosophila melanogaster 50 CG3987 FBgn0038292 FBtr0083026 2 1 1 106 3R 10965775 10966068 CATTCAATGCTGAAACTGG 57 10966136 10966156 GGAGTATGTACCACTATTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cp16 FBgn0000356 FBtr0076574 2 1 1 131 3L 8725299 8725317 ATTCCCTCAACCGTTATGG 59 8725412 8725564 TCTTGAAGACTGGATCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33228 FBgn0053228 FBtr0072331 1 1 1 124 2R 20556186 20556260 AATACGTGGCTGTCTATGG 59 20556080 20556100 GCCCAGTTTGTACATAATGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14495 FBgn0034293 FBtr0086810 1 1 1 69 2R 13936867 13936885 CTGCGATACATTGGTTGAC 58 13936732 13936834 GTCGAGGTTATGGATTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13282 FBgn0032612 FBtr0080929 2 1 1 111 2L 16832789 16832866 AAATTCCTTTGCTTGCAGTC 59 16832697 16832716 CAGGAGGTAGGATATGTAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31731 FBgn0028539 FBtr0080535,FBtr0110941 1 2 2 84 2L 13785904 13785925 CTCTACAACTATTTGGGTTGTG 58 13785968 13786292 TGTAAGTCTTGGGATCTAGGA 59 NA Drosophila melanogaster 50 CG16852 FBgn0028942 FBtr0080507 2 1 1 85 2L 13540993 13541012 TCCCAAAGAGTGAATATGGA 58 13541059 13541139 CACGATTTGATCTTCTTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089429,FBtr0089431,FBtr0089430,FBtr0089436,FBtr0089435,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437,FBtr0089428 3 10 10 116 2L 113362 113446 ATTGTCAAGGACCTAAACCTG 59 113523 113542 TCAGTTGTCAATCTCCAGAG 59 NA Drosophila melanogaster 50 snoRNA:Psi28S-3436a FBgn0086668 FBtr0091752 2 1 1 85 X 6636811 6636829 ATTCTGGACAACTGCTGAC 59 6636744 6636762 CTAGCTCATTGAAAGCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33491 FBgn0053491 FBtr0089603 2 1 1 75 X 20073272 20073290 ATTAAGCAGGAGTTCGAGC 59 20072823 20072841 TGTAGTCACCAGAGGTCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 AnnX FBgn0000084 FBtr0070025 3 1 1 144 X 20066249 20066349 TGATGGCCATAGTTGAGTG 59 20066123 20066141 TTAATGGTCTCCAGGTCGA 59 NA Nonspecific Drosophila melanogaster 50 CG14230 FBgn0031062 FBtr0074787 3 1 1 88 X 19600124 19600142 CAGAAACGATCCTCGTCTC 59 19600254 19600274 TCTTCACTTGGTCATATTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14218 FBgn0031031 FBtr0074770 3 1 1 77 X 19474949 19474967 ATACCTTCTTTAGGTCGCG 59 19474890 19474908 GGGAGTCAACTAAGTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6659 FBgn0030946 FBtr0074613,FBtr0074612 2 2 2 80 X 18550297 18550368 CGCATGTTCATGATCTTCG 59 18550235 18550253 GGTGAAGATGAAGGTGGAG 59 NA Drosophila melanogaster 50 CG33639 FBgn0053639 FBtr0091616 1 1 1 60 X 18108515 18108533 CCACCTGGAGCTTTATCTG 59 18108052 18108072 CACTAGTAACATCATTACGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32556 FBgn0052556 FBtr0074477 2 1 2 96 X 17578214 17578232 CGACAAGAGGGTCATATCG 59 17571525 17578155 GTTCACGTAGGTCTGATCTG 59 NA Drosophila melanogaster 50 RhoGAPp190 FBgn0026375 FBtr0074483,FBtr0074482,FBtr0074481 3 3 3 81 X 17536385 17536403 CGAGGGCATTTATAGGGTG 59 17536257 17536343 CTCAGTATTGGTATCCTCTTCG 59 NA Drosophila melanogaster 50 CG8568 FBgn0030841 FBtr0074436 3 1 1 60 X 17343860 17343879 ATTGATGGCACAAACAATGG 59 17343819 17343838 CTTCTACTGTCTTCTCACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12996 FBgn0030835 FBtr0074419 3 1 1 185 X 17144638 17144656 GATTAGCAGGAACCTGGAC 59 17145113 17145131 GACGTGTTTACTTTGTCGC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 mRpL3 FBgn0030686 FBtr0074090 1 1 1 191 X 15655386 15655404 ATCAATTACTGGGTCTCCG 58 15655679 15655697 CAAAGTTATTGGTGCCCAC 59 NA DesignNoJunction Drosophila melanogaster 50 Grip128 FBgn0026433 FBtr0074075 1 1 2 60 X 15365294 15365421 GGACAGCTTAAGTGACTGG 59 15365252 15365270 GGGCTTCAGAGTAGTTGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG14407 FBgn0030584 FBtr0073989 1 1 1 126 X 14732199 14732217 TAGCTGACACTTGAACAGC 59 14732091 14732109 AATCTGGTATCTCGGATGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 rut FBgn0003301 FBtr0073992 1 1 1 108 X 14689075 14689093 GATGGATGTGCTACAGGAG 59 14688852 14689004 GTAGAGTTCCATGTTGTTGC 59 NA Drosophila melanogaster 50 Cpr12A FBgn0030494 FBtr0073784 2 1 1 60 X 13437939 13437957 AGCTACGAGTATCGATTCG 58 13437979 13437999 CGAAATATCCACGTTCATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33651 FBgn0053651 FBtr0091628 3 1 1 64 X 12785773 12785792 CTACAGACGACCTTAAGGAG 58 12785728 12785746 GAAATGTGGTTTGCTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32647 FBgn0052647 FBtr0073703,FBtr0073702 1 2 2 114 X 12670827 12670915 ACAAACTGTACCAGGAACG 59 12670731 12670749 AGGAATCCCAGCATTATGG 59 NA Drosophila melanogaster 50 CkIalpha FBgn0015024 FBtr0073680,FBtr0073682,FBtr0073681 1 3 3 81 X 12550119 12550138 TGAACTATTGTCGTAGCCTG 59 12550182 12550381 GTTCTGAACAGTATGCGGA 59 NA Drosophila melanogaster 50 CG32655 FBgn0052655 FBtr0073633 1 1 1 60 X 12128968 12128989 GGATTCTCAATTTACAGACCAG 58 12128929 12128948 TTTGGAATCATCGGTATCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15734 FBgn0030374 FBtr0110815,FBtr0073636 1 2 2 61 X 11980868 11980886 TTGACTATTATTCGCCCGA 58 11980745 11980763 AATCAATGCATTCTCGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34323 FBgn0085352 FBtr0112525 3 1 1 60 X 11964608 11964626 ACCTGGGTATTGAAGTACG 58 11964647 11964668 CCTGATTAACGTGAATAAGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CkIIbeta FBgn0000259 FBtr0073562 2 1 6 131 X 11689032 11689147 TTGTTCCAAGGCTATATGGA 58 11694047 11694065 TATTCTCAGGCTCTTCGTC 58 NA Drosophila melanogaster 50 bif FBgn0014133 FBtr0073527,FBtr0073526 2 2 2 140 X 11575138 11575759 GCAATTGCAGATTTCACAG 57 11575863 11575881 AACAACAGAGTGATGACCT 58 NA Drosophila melanogaster 50 dsh FBgn0000499 FBtr0073454,FBtr0073455 2 2 2 60 X 11251512 11251531 AGTATTATTGCCGACATTGC 58 11251554 11251572 CCTCGAGGTTATTCTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15295 FBgn0030220 FBtr0071508 2 1 1 67 X 10511011 10511029 TACATAGGCACCAAGAACG 59 10510962 10510980 ACATCGTTCTTGAACTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34319 FBgn0085348 FBtr0112521 1 1 1 60 X 10149201 10149539 CTATCAACTACAAGCGCGA 59 10149159 10149177 CGTATCTCAAAGTCCAGCA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15312 FBgn0030174 FBtr0071421,FBtr0071423,FBtr0071422 1 3 3 70 X 9955170 9955253 ATAGTTCAGACTGGTCGTG 58 9955118 9955136 AAGCATACGTAGATTCCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG15252 FBgn0030167 FBtr0071426,FBtr0112970 3 2 2 142 X 9873643 9873809 ACTTTCTGAGGCTCATGAC 59 9873402 9873538 TAACATTTGGCGACTTTACG 58 NA Drosophila melanogaster 50 l(1)G0232 FBgn0028341 FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407 1 6 6 83 X 9524045 9524065 CCGTCGGATTATATTAATGCG 59 9523917 9524001 CTTTGGTAATGGACCTTGAG 58 NA Drosophila melanogaster 50 CG34026 FBgn0054026 FBtr0100081 2 1 1 62 X 9428182 9428200 CAACTGCTGTATTGGTCAG 58 9428223 9428244 CGGAAGTGAACTTAATAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 c11.1 FBgn0040236 FBtr0071326 3 1 1 108 X 9172925 9173001 TTCATACGCATAGGTGGAC 59 9172835 9172853 ACTTCATCTTGAGCTGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG7766 FBgn0030087 FBtr0114595,FBtr0071351,FBtr0114594 1 3 5 110 X 8994627 8994645 ATGATCGACATCCTCAAGG 58 8992436 8994554 CTTGTCCTGATCTAGATGGA 57 NA Drosophila melanogaster 50 CG10970 FBgn0030078 FBtr0071356 3 1 1 60 X 8963897 8963915 GCCTTTAAGAAGCTCATCC 58 8963855 8963874 TAATGAACTCCTTGATGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15364 FBgn0030075 FBtr0071261 2 1 1 60 X 8934289 8934307 ACCGATCCATTTAGAACCG 59 8934330 8934349 CTGTGCATTACCCATTAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hexo2 FBgn0041629 FBtr0071249 3 1 1 285 X 8605871 8605889 GTACATCGAGACCTACCTG 58 8606138 8606226 GATTCGGGATTCCAGTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG12065 FBgn0030052 FBtr0071215,FBtr0071214 3 2 4 95 X 8480265 8480589 ATACACCACAGTCGATTCC 59 8481296 8481315 CCCAGAGTATACACATTCGA 58 NA Drosophila melanogaster 50 spirit FBgn0030051 FBtr0071231,FBtr0071230 2 2 2 86 X 8466541 8466559 GAGGTTCGACCACTATGTG 59 8466322 8466340 TTGTTCAGTTCATTGCAGG 58 NA DesignNoJunction Drosophila melanogaster 50 l(1)G0193 FBgn0027280 FBtr0071129 3 1 2 83 X 7839977 7839995 CAACGAGGATCGATCTTCC 59 7837244 7839931 ATTTGATCGGTAGACACCTC 59 NA Drosophila melanogaster 50 hdm FBgn0029977 FBtr0071133 2 1 1 107 X 7813103 7813124 CATACATCAGTTTACTGCAGTG 59 7812914 7812933 GGTATATGTTGTTGACAGGC 58 NA DesignNoJunction Drosophila melanogaster 50 dec-1 FBgn0000427 FBtr0071146,FBtr0071145 3 2 3 166 X 7764353 7764371 AGTTACGGAACAAGCTACG 59 7764007 7764223 TTCGGGTTTATTGTCCTGG 59 NA Drosophila melanogaster 50 CG3168 FBgn0029896 FBtr0070986,FBtr0070985,FBtr0070984 3 3 3 90 X 6617448 6617466 CTTCTCGCAGACATACTCG 59 6616689 6616708 GAAGTACGACCAGATCACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5928 FBgn0029836 FBtr0100295,FBtr0070871 1 2 2 80 X 5962705 5963096 ACCTTTATTCAGAAGCCCA 58 5963139 5963158 TTTGCCTCCTATGATATCCA 57 NA Drosophila melanogaster 50 mof FBgn0014340 FBtr0070829 1 1 1 60 X 5768537 5768555 AGCAGATCACAATCAAGGA 58 5768495 5768513 TAGATAATGTCGTCGTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SK FBgn0029761 FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070769,FBtr0070766 2 5 7 95 X 5292153 5292440 ACTGACATGGCTAAGACAC 59 5292498 5292517 CTCTAGGTTGGTTAAACGCT 59 NA Drosophila melanogaster 50 dhd FBgn0011761 FBtr0070749 3 1 1 274 X 5206671 5206689 ACAAATTCGAGGAGCTGAC 59 5206924 5206945 CATGAGCATACACATAACATCG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Cdk7 FBgn0015617 FBtr0070756 1 1 1 60 X 5202472 5202490 AAGGGTCTGGAGTATTTGC 59 5202430 5202449 AATTGTTGGGCTTCAAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2982 FBgn0029704 FBtr0070649,FBtr0070648 2 2 2 60 X 4215547 4215565 TTCAGCTCGCAAGATAGAG 59 4215589 4215607 CTCGGTCATAAGAAGACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6414 FBgn0029690 FBtr0070624 2 1 1 70 X 3863403 3863422 ATTAATGCTCCATCTGTGGG 59 3863291 3863311 GATGAAAGCTAACATTCGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 fd3F FBgn0061173 FBtr0070602 1 1 1 91 X 3704128 3704146 GGTCAACTCTATCATCAGC 57 3704282 3704300 CACTTTCCGTAACAACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514 1 9 14 83 X 3215176 3215194 TCTATATCGCTCCGATTCG 58 3215240 3219968 TCTTTAAACCTTTCGCTAGC 58 NA Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070511,FBtr0070514 2 13 14 81 X 3228354 3228595 CGTCGCTTAAGTTCAAACG 59 3228640 3228658 TCGGAAATCTGATTTCCCG 59 NA Drosophila melanogaster 50 CG18508 FBgn0028746 FBtr0070543 2 1 1 98 X 3066979 3066999 CCTGTATTATCATTCCACTGC 58 3066901 3066919 CATCGTCGTCCTTCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3740 FBgn0023530 FBtr0070283 2 1 1 165 X 1562735 1562753 TCATCCTAAACGACCTGAC 58 1562588 1562606 GTCACGAATGACATGACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11398 FBgn0040366 FBtr0070250 2 1 1 60 X 1109045 1109066 CCACATACATATGAGGATGAGG 59 1109006 1109024 GTTCCTCGAACTGTAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cin FBgn0000316 FBtr0070064,FBtr0070065 3 2 2 82 X 150606 150624 TATGCCATGAAGTCCACTG 59 150667 150808 GGCAAAGAATTAGGTGAATCTC 59 NA Drosophila melanogaster 50 CR42206 FBgn0085833 FBtr0114291 2 1 1 287 U 4660492 4660510 TCATACTGGCGTTTCTCAC 59 4660813 4660833 GGGTACATTTGGCTTAAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CR40728 FBgn0085769 FBtr0114219 2 1 1 67 U 9902173 9902192 ATGATTCACAGAAGTCGACC 59 9902125 9902143 CTACGGAAACCCTGTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40972 FBgn0085548 FBtr0113961 1 1 1 60 U 9895859 9895877 TACGATTTCAGCTGTTGGA 58 9895690 9895710 CTTTCGCGAATGAAGATACTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41279 FBgn0085595 FBtr0114039 1 1 1 82 U 2221186 2221204 GAAACGAACCACGATACAC 58 2219649 2219667 GCCAGGTACCATAAATGAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG18160 FBgn0039980 FBtr0113765 1 1 1 106 U 376473 376491 ATGAATATAAAGCCCGGCA 59 376561 376579 CAATCGTGGATATGGAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dyrk3 FBgn0027101 FBtr0100402,FBtr0100404,FBtr0100406,FBtr0100403,FBtr0100405 3 5 5 141 4 1230562 1230633 CAGTTACAGGGCAGAATAGG 59 1230440 1230458 AAGTCCGTTTCTGGAACAG 59 NA Drosophila melanogaster 50 ATPsyn-beta FBgn0010217 FBtr0089187,FBtr0089186 1 2 2 60 4 1053778 1053798 GATACTGGGTATCCTATCCGA 59 1053818 1053838 CATTAATGATGCGTCCTAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED26 FBgn0039923 FBtr0089253,FBtr0089254 3 2 2 94 4 802283 803807 AATAGACGATCTGGGAAACAC 59 802209 802230 ACGAGGTACATTCCTTTATCTC 59 NA Drosophila melanogaster 50 CG11260 FBgn0039912 FBtr0089081 3 1 1 65 4 611661 611679 ATCCCTACAGGTGTACCTC 59 611708 611726 ATCGTTGACCATGAATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0089130,FBtr0089131 2 2 5 113 4 363634 363652 GGTATGAATCTGGGTGAGG 59 350957 363558 GCCTATTACTTGTGTTTGCA 58 NA Drosophila melanogaster 50 CG32006 FBgn0052006 FBtr0089170 2 1 1 139 4 173533 173613 GATACTACCAACACTCCCA 57 173716 173734 CTAGGCCAGGATACATCAG 58 NA Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450 1 8 8 166 4 157780 157853 TCGAGCAACCTTAAGACAC 59 158041 158059 TAAACCAATTGCTTGCAGC 59 NA Drosophila melanogaster 50 CR33294 FBgn0053294 FBtr0113460 3 1 1 97 3R 21527 21602 AACAGTAATCAAACAGCTGG 58 21661 21680 GATATCTGACAGTAATGCGC 58 NA Drosophila melanogaster 50 tre-3 FBgn0084245 FBtr0113490 3 1 1 98 3R 12589329 12589347 GAACTTCCACTCAAAGGGA 59 12589249 12589270 AGGTGATTCCTCATTGATATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sip3 FBgn0039875 FBtr0085842 2 1 1 96 3R 27598371 27598390 CTACATCACCAAATCGAACG 59 27598510 27598584 CAGGAAGATCTTGCTTAGCA 59 NA Drosophila melanogaster 50 pasha FBgn0039861 FBtr0085820 2 1 1 116 3R 27446120 27446138 TAACGGGCAACAATAAGGA 58 27446274 27446292 TCTTGTTGCAGAATTCGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG15561 FBgn0039829 FBtr0085776 2 1 1 68 3R 27040838 27040856 AAAGACAAGGCTGAGAAGG 59 27040788 27040807 GATCTTGACGGGATCTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15556 FBgn0039821 FBtr0085737 2 1 1 60 3R 26955068 26955086 CCAACTGAAGAGAAAGGGA 58 26955026 26955047 GAGTGAATCTCGAGTATAGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15535 FBgn0039764 FBtr0085629 1 1 1 118 3R 26249271 26249289 GAGAAAGTTAGAGCGGACC 59 26249171 26249189 ATGCGATCCTTCATCAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085631,FBtr0085634 2 4 5 241 3R 26212044 26212062 CAGCGATCTGATCAATGTG 58 26211759 26211777 TCTTCTTGAGAGTGGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9743 FBgn0039756 FBtr0085571 1 1 1 84 3R 26022752 26022826 TACGACAAGAACCTCATGTC 59 26022687 26022705 AAACGTGGTGGTAATTGTG 58 NA Drosophila melanogaster 50 CG18682 FBgn0040625 FBtr0085588 3 1 1 80 3R 25948595 25948613 TGGGTCTGGATTATCTGGT 59 25948474 25948552 CTACAACTAATGGCTTCGGT 59 NA Drosophila melanogaster 50 Ice FBgn0019972 FBtr0085482 1 1 1 60 3R 25626088 25626106 AGCGATAGTGATTGCATCC 59 25626130 25626148 CGTAGATGTAGCCCATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11880 FBgn0039637 FBtr0085373,FBtr0085372,FBtr0085371 3 3 3 75 3R 24951436 24951454 ATCACTGGATGTGACACTC 58 24951562 24951580 CCTTCATAGTGTCCCAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 3 7 8 82 3R 24639656 24639675 TTACTGCTACGGATATTGGC 59 24639719 24640879 GCTCAAACACCTTATAGCAG 58 NA Drosophila melanogaster 50 CG9990 FBgn0039594 FBtr0085309,FBtr0085308 2 2 2 101 3R 24518601 24518620 TCCATCTACAAGTGCATCAG 59 24518681 24518867 GATGTTGTTACTGAAGTTCACG 59 NA Drosophila melanogaster 50 Noa36 FBgn0026400 FBtr0085320 3 1 1 87 3R 24424304 24424322 ACAAGCTGGGTCAATACTC 59 24424235 24424253 TTCTTGTCGTACTTGAAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34436 FBgn0085465 FBtr0112737 1 1 1 108 3R 24108560 24108578 ATAACATCAGCAAGCTGTG 58 24108706 24108724 CATGGTAATCATCACTGCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG5514 FBgn0039560 FBtr0085252,FBtr0085253 1 2 2 109 3R 23765359 23765436 TACCTTCGAAGGTACTGAG 57 23765509 23765527 CTATGTTTGCCTTCACCTC 58 NA Drosophila melanogaster 50 CG12259 FBgn0039557 FBtr0085270 2 1 1 60 3R 23745997 23746016 ACTCCATCTACCAGTTTCTG 58 23745956 23745974 AGTTCGATGAACTCCTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5639 FBgn0039527 FBtr0085202 1 1 1 97 3R 23416040 23416058 TGATTAGCAGGTCGTATGC 59 23415898 23415982 GTTGTGGTCATTCTTAAATCCG 59 NA Drosophila melanogaster 50 BM-40-SPARC FBgn0026562 FBtr0085094 3 1 1 189 3R 22696077 22697648 ATTGAGATCGCCATTCGAG 59 22695844 22695927 ATCCTTGATCTTGTTCTTCTCC 59 NA InUTR Drosophila melanogaster 50 CG14240 FBgn0039435 FBtr0085058 3 1 1 60 3R 22446824 22446842 GACTTCGAGGATAAGGCTG 59 22446782 22446800 CGCGAATGTTCTTCTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdf FBgn0023178 FBtr0085024 2 1 1 157 3R 22281657 22281675 GTACAATCGGGATCTCCTC 58 22281518 22281536 AGGAGTTGATTAGCTCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dys FBgn0039411 FBtr0113293,FBtr0113294 1 2 3 81 3R 21914065 21921925 CGGCATGTTTACAAGATTCG 59 21914003 21914024 TATCTCCGCATTTATGAGATCG 59 NA Drosophila melanogaster 50 gro FBgn0001139 FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963 3 5 5 104 3R 21870081 21870172 CGCCATTATGTTATGTACTACG 59 21870236 21870255 AAGTAGCTGGTTGATCAGTG 59 NA Drosophila melanogaster 50 Nf1 FBgn0015269 FBtr0084952 1 1 3 129 3R 21819199 21819399 GGATAAAGCATTCTCATCGGA 59 21819490 21819508 TCAATGTGATGGACTGTCG 59 NA Drosophila melanogaster 50 CG4730 FBgn0039355 FBtr0084934 3 1 1 110 3R 21503178 21503257 CGTAACAAACTACGCATGC 59 21503086 21503104 TGCCATTACCAACTTGGAG 59 NA Drosophila melanogaster 50 Fur1 FBgn0004509 FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986 2 5 6 196 3R 21182169 21182187 GAGACGAGGAGACATTCAG 59 21180029 21181956 TGATTTGTGCCATATAGCGA 59 NA Drosophila melanogaster 50 CG31099 FBgn0051099 FBtr0084856 1 1 1 120 3R 21135535 21135553 CTTAATTTCGGAGGCAGTC 58 21135380 21135398 CGAACTGATTCATCATCGT 57 NA DesignNoJunction Drosophila melanogaster 50 tok FBgn0004885 FBtr0084689,FBtr0084690 3 2 2 90 3R 20568665 20568888 CAGTCACAGAGTCAGAGTG 59 20568942 20568960 CCTCATTCTTGTAGCTGGA 58 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100638,FBtr0100637 2 3 17 117 3R 20508113 20512918 AGGGCGAAGACATATTGTG 59 20512999 20513017 ATGGAGAAAGACCACTTCG 59 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100632,FBtr0100636,FBtr0100637 3 3 17 93 3R 20521092 20521110 AGGACATTAAGGACGAGAC 58 20521838 20528849 CGATTGAGTACTAAGTCATCG 58 NA Drosophila melanogaster 50 CG13624 FBgn0039209 FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795 3 6 6 127 3R 20386540 20386625 TTAAGGTGTACAAGCACAG 57 20386431 20386449 AGTCATGTCATTGATGGTG 57 NA Drosophila melanogaster 50 Spase22-23 FBgn0039172 FBtr0084564 1 1 1 60 3R 20055569 20055588 TCTTTCTTGACTACCGTACC 58 20055528 20055546 ACATTCTTCACCAGCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6204 FBgn0039165 FBtr0084555 3 1 1 81 3R 20020755 20020834 AAAGGAGGATTGCCTAAGTG 59 20020878 20020896 CTGGAACATGATCAGTGGT 59 NA Drosophila melanogaster 50 CG6129 FBgn0039152 FBtr0084544 3 1 2 99 3R 19948739 19948815 GTTGAATTTGAGGTCTGAGGA 59 19948876 19948894 AAGATCACGATTCAGGCTC 59 NA Drosophila melanogaster 50 Rab7 FBgn0015795 FBtr0084503 1 1 1 106 3R 19820233 19820251 TACCCTACTACGAAACGTC 58 19820321 19820400 GTTGATAACTTCAGCCTCC 57 NA Drosophila melanogaster 50 Pli FBgn0025574 FBtr0112908,FBtr0084527,FBtr0112907 2 3 3 94 3R 19691347 19691365 TGAATCTCCCATACTGGCT 59 19688923 19691289 AGTAACCATTGTAGCCGAG 59 NA Drosophila melanogaster 50 Tbp-1 FBgn0028684 FBtr0084452 2 1 1 203 3R 19579306 19579324 ACCTACAGAGCAGTACTCC 59 19579548 19579566 AAGGTGGACTTTGTCTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13822 FBgn0039098 FBtr0084434 3 1 1 174 3R 19503722 19503740 TCCTATTCGAATGAGCTGG 58 19503875 19503969 GATCAAAGTCATTCTCGAACAC 59 NA Drosophila melanogaster 50 CG34111 FBgn0083947 FBtr0110800 3 1 1 105 3R 19067708 19068052 CGTTCATCTAGTCTCTGGC 59 19067621 19067639 TGATCCCATTGAGCATCTG 59 NA Drosophila melanogaster 50 CG4467 FBgn0039064 FBtr0084390,FBtr0110801 2 2 2 89 3R 19057621 19057639 GAAGTGGATCTTTCCAGTC 57 19057481 19057569 ACATTGAAGGTTACATCCAC 57 NA Drosophila melanogaster 50 CG4467 FBgn0039064 FBtr0084390,FBtr0110801 3 2 2 90 3R 19057621 19057639 GAAGTGGATCTTTCCAGTC 57 19057480 19057568 CACATTGAAGGTTACATCCA 57 NA Drosophila melanogaster 50 Or94a FBgn0039033 FBtr0084341 1 1 1 60 3R 18813338 18813356 CTACCAACTCCACAACCAG 59 18813380 18813398 CTTGAAGAATCGTTGCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6954 FBgn0039000 FBtr0084300 3 1 1 80 3R 18503492 18503511 GCGGTGTTAAGCAATAATCG 59 18503554 18503632 GTCCACAGAGAACTGAGAG 59 NA Drosophila melanogaster 50 loco FBgn0020278 FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273 1 4 4 85 3R 18446567 18446653 AGCACCAAGATGAACTACTC 59 18446501 18446519 GTCGAAGTTGATTTCGGTG 59 NA Drosophila melanogaster 50 CG31161 FBgn0051161 FBtr0084271 1 1 1 93 3R 18443667 18443685 AATGGAGATCGATGTGCTG 59 18443741 18443814 GGCCTTCATCATAATCTGCT 59 NA Drosophila melanogaster 50 CG6678 FBgn0038917 FBtr0084148 2 1 1 175 3R 17714978 17731656 CTCCATTTGAAGTGTACGG 58 17731795 17731813 AAGATACGGCTAAAGAGCC 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG33092 FBgn0053092 FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144 1 7 7 268 3R 17705102 17705177 AGGACTTTCGGGATTTGTG 59 17705407 17705427 AGGTACCAGTGAAGTTAATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG34034 FBgn0054034 FBtr0100089 1 1 1 108 3R 17564423 17564441 AAATGCCACAATGTTGGTG 59 17563344 17563362 TGGTGAACATGGTAACCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3353 FBgn0038869 FBtr0084108 1 1 1 125 3R 17043428 17043505 AAAGTCGGAGAATTTGCTG 58 17043321 17043339 AATGTCGTTGGAATAGGGA 58 NA Drosophila melanogaster 50 lrrk FBgn0038816 FBtr0112788 1 1 1 80 3R 16465955 16465974 TGATGAAGCTGGATGATCTC 59 16466016 16466104 GACTGACAATGTAGCTTCTG 58 NA Drosophila melanogaster 50 CG17199 FBgn0038775 FBtr0083874 2 1 1 60 3R 16035348 16035366 TAATCAAACGCCAAACAGC 59 16035306 16035324 ACTGGACTCTTTGACTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hs6st FBgn0038755 FBtr0083846 2 1 1 80 3R 15763020 15763040 ATCGAGAAGCTAAACAGTCTG 59 15756239 15762978 CTTCAGATGTTCGAAACGC 59 NA Drosophila melanogaster 50 Arc42 FBgn0038742 FBtr0083817 3 1 1 173 3R 15703861 15703880 TATCCAGAGAAACAGATCCG 58 15704084 15704102 ATACAGGGAGTTGTTCACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31459 FBgn0051459 FBtr0083812 2 1 1 162 3R 15667142 15667160 GTTCTTCAAGTTCAGTGGG 58 15667350 15667368 AGTAACACATGAGCACCAC 59 NA DesignNoJunction Drosophila melanogaster 50 repo FBgn0011701 FBtr0083564 2 1 1 68 3R 14062805 14062823 TGGACCATTTGGATCATGG 59 14062855 14062873 ATCCTCCGTTGATCATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14323 FBgn0038529 FBtr0083498 1 1 1 61 3R 13447715 13447733 TCATACAGGACCAGAACCA 59 13447672 13447690 GACGAAACAAAGTACCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 decay FBgn0028381 FBtr0083304 1 1 1 181 3R 12325170 12325496 CCACATTCGACAAATTCTTCTC 59 12325010 12325028 CGTATTCGACTGGTACTCG 59 NA Drosophila melanogaster 50 rec FBgn0003227 FBtr0083193 3 1 1 60 3R 11650363 11650382 TTTGGAGCTTACGAAGAGAC 59 11650322 11650341 CTCATCGAATTCGAAGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34274 FBgn0085303 FBtr0112469 1 1 1 83 3R 11558093 11558163 GCTTTATCAAGTTACGCGA 58 11558210 11558228 CACGCAGATAATGTTCGTC 58 NA Drosophila melanogaster 50 Tm2 FBgn0004117 FBtr0083080 1 1 3 102 3R 11138921 11138939 TCCATCAAGTTGAAGGAGG 58 11139005 11139327 CATTGAAGAGACGGTCCTC 59 NA Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 3 7 12 160 3R 11122417 11125003 AGAAATACGATGAGGTTGC 57 11126526 11126544 CTTCTCCTCAGAGACTTCC 58 NA Drosophila melanogaster 50 CG17304 FBgn0038267 FBtr0083012 3 1 1 64 3R 10685075 10685093 AATGATCATCGAGGTGCTC 59 10685029 10685049 ACATCATTCTAGTGGCATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 btsz FBgn0053555 FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530 2 5 5 100 3R 10634158 10634176 ATAAGCTGAGTGCTTTGGA 58 10634011 10634096 TAGATACACCTTAACGTAGGG 58 NA Drosophila melanogaster 50 CG14852 FBgn0038242 FBtr0082957 3 1 1 176 3R 10391988 10392006 TAGTCCTTCAACAGGATCG 58 10392145 10392164 TTATTCCTGTTATTGCGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14356 FBgn0038207 FBtr0082908 2 1 1 89 3R 9956745 9956763 GTGAGAATCTCTACCAGGC 59 9956674 9956692 CATGGGACTTATCCTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34383 FBgn0085412 FBtr0112622,FBtr0112621,FBtr0112624,FBtr0112623 1 4 4 132 3R 9583498 9584191 ACTCTAAGAAACTGGAGCAG 59 9584286 9584304 TTGATGTGAGAGCCATCAC 59 NA Drosophila melanogaster 50 ry FBgn0003308 FBtr0082704 2 1 1 136 3R 8863408 8863426 TCTTTGCCATTAAGGAGGC 59 8863526 8863609 TATTTCAAGCAGTTCCGTG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG7242 FBgn0040494 FBtr0082690 2 1 1 88 3R 8787956 8788448 CATGGAAAGCATTCACACG 59 8788500 8788518 GTACAGTGACACCCTTCAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG5167 FBgn0038038 FBtr0082583 1 1 1 60 3R 8233214 8233232 CGTTTCCTTTACGAACTGG 58 8233256 8233274 GATACGTCATGTAGGCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34402 FBgn0085431 FBtr0112656,FBtr0112654 1 2 3 81 3R 8228195 8228269 CATTGGAAGTTGTGACCAC 58 8228314 8228332 TCTGCTGAACTTTCGATCC 59 NA Drosophila melanogaster 50 GstD1 FBgn0001149 FBtr0100410,FBtr0082607 3 2 2 87 3R 8193741 8193759 AATGTGAACAGGTGGTACG 59 8193672 8193691 AGTACTTCTTGAACTCCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 3 15 15 123 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811939 7812029 GGTTCTTCAGGATGTTGGA 59 NA Drosophila melanogaster 50 Taf12 FBgn0011290 FBtr0082442,FBtr0082440,FBtr0082441 1 3 3 68 3R 7504487 7504505 GATCATCGACGACTTTGTC 58 7504437 7504455 TTAGACTTTCGGTGCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS25 FBgn0086472 FBtr0082369,FBtr0082370 1 2 2 127 3R 7041512 7041531 AGAAGCTGTACAAGGAAGTG 59 7041336 7041422 CTTGATCAGACCCTTCTCG 59 NA Nonspecific Drosophila melanogaster 50 CG17100 FBgn0037813 FBtr0082246 1 1 1 60 3R 6222516 6222535 ACCGGAAGACGTAATAAGAC 59 6223098 6223118 GTTTCTCAATGATTCGATGGG 59 NA DesignNoJunction Drosophila melanogaster 50 MED6 FBgn0024330 FBtr0082162,FBtr0082161 3 2 2 99 3R 5592834 5592906 CATCTGCACAACATGATCG 59 5592753 5592771 CTTCCGAGGGATTATGACG 59 NA Drosophila melanogaster 50 CG12948 FBgn0037739 FBtr0082167 3 1 1 62 3R 5572938 5572956 CCGCTACATAATTCAGTGG 57 5572894 5572912 ACGTAGACAAAGTCATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8176 FBgn0037702 FBtr0082064,FBtr0082065 1 2 4 104 3R 5348603 5349931 TAGCAATCAAGTCTCTGGC 59 5349999 5350017 TCTTCCTGTATGTTCTCGG 58 NA Drosophila melanogaster 50 CG11980 FBgn0037652 FBtr0081962,FBtr0081963 3 2 3 102 3R 4830104 4830123 ACCAAATAACCTTCAAGGAG 57 4830245 4830263 TAGTGACAGTAGACCAGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG8116 FBgn0037614 FBtr0081905 2 1 1 148 3R 4542947 4542966 TTAATCTAAACTACGGCGAG 57 4543583 4543602 TGTTAATATTACGGATGCGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG8036 FBgn0037607 FBtr0081882,FBtr0081881,FBtr0081883 2 3 3 181 3R 4499021 4499107 GATCACTACCAGCAAGGAG 59 4499252 4499270 TTGAGGATCTCGTTAACGG 59 NA Drosophila melanogaster 50 CG9626 FBgn0037565 FBtr0081864 1 1 1 81 3R 4123029 4123108 CACGAGAAAGAGAAATTGTCC 59 4122968 4122986 CATCCGAAGTCTTGACCTC 59 NA Drosophila melanogaster 50 Sp7 FBgn0037515 FBtr0081740,FBtr0081742,FBtr0081743 3 3 4 93 3R 3586989 3587741 ACAAGGAAGTTGTAGGAATCC 59 3587795 3587814 ATAAGACTGCTGAATCACGG 59 NA Drosophila melanogaster 50 dj FBgn0019828 FBtr0089742,FBtr0089741 3 2 2 66 3R 2885369 2885387 AAAGTTCTTGCAAGACCTG 58 2885416 2885435 CTGATTCCCTTCCTTAAACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pak FBgn0014001 FBtr0081714,FBtr0114607,FBtr0081715,FBtr0081716 3 4 4 85 3R 2184959 2184977 CATTTCAGGACTTCCTCGA 58 2185026 2185115 TAGGAAGGGATGCTTTAGC 58 NA Drosophila melanogaster 50 Obp83ef FBgn0046876 FBtr0078618 3 1 1 61 3R 1935561 1935579 CTCGTGGATGTACCATGAG 59 1935518 1935536 CCTCCACTAGCTTATTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PEK FBgn0037327 FBtr0078770 2 1 1 96 3R 1286480 1286583 CGATACTTCCATTCCTGGAC 59 1286403 1286421 TCTGGATAGAGGTGGACAG 59 NA Drosophila melanogaster 50 7B2 FBgn0041707 FBtr0078789,FBtr0100112 2 2 2 70 3R 1203302 1203320 CAGGATAGTGCTGATGTGG 59 1203354 1203372 ATCTGCATGATGTACTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 uta FBgn0037302 FBtr0078826 1 1 2 60 3R 1062627 1062645 GGAGGGTCTTAGTCAAGGA 59 1062585 1062603 TGAAACTGACTTTGCTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2022 FBgn0037292 FBtr0078845 3 1 1 85 3R 812592 813976 GGAGGTGAACGATAAATTCCT 59 812527 812545 GAACAAAGGCGAAGTTCAC 59 NA Drosophila melanogaster 50 CG1074 FBgn0037250 FBtr0078925 1 1 1 81 3R 261159 261238 CATAATAACAGATCCTCCCTATGG 59 261278 261296 TCTAGTGTTGGCCTTTACG 59 NA Drosophila melanogaster 50 CG1092 FBgn0037228 FBtr0111222,FBtr0078978 2 2 2 60 3R 93615 93634 CAGTTCGTTAATGTTCTGGA 57 93654 93675 GGAAGCTCTTTAAGTAGATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14641 FBgn0037220 FBtr0078985 1 1 1 60 3R 56886 56905 TTGCCATCAAATCTAGTTCC 57 56845 56863 CTGCATAAGTAGGCTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snmRNA:641 FBgn0065088 FBtr0091663 3 1 1 64 3L 17661784 17661802 AATATAGAATCGGCCGACG 59 17661738 17661756 TAATTGGGTGTCCAATTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ten-m FBgn0004449 FBtr0078509,FBtr0112842 2 2 2 140 3L 22294408 22295905 TTTAACGAAAGTCGATCAGC 58 22294287 22294305 CATTAGGTCGAACCATCCA 59 NA Drosophila melanogaster 50 CG7158 FBgn0037116 FBtr0078462 3 1 1 68 3L 21669551 21669570 TGAACTGGTACTAAATCGGC 59 21669439 21669457 TTGTGATCTACCACTTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 Aef1 FBgn0005694 FBtr0078349,FBtr0078350,FBtr0078348 1 3 3 116 3L 21429089 21429107 ACCATGTGAAGATCCACAC 59 21429250 21429268 AGACTTTGTCCATGACGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34000 FBgn0054000 FBtr0100055 2 1 1 90 3L 20980777 20980795 CAATTCCCATTCGCTATCG 58 20978090 20978108 CATAAACGCTTGCAAATCG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG13251 FBgn0037014 FBtr0078243 3 1 1 87 3L 20631424 20631442 TATACACCATCAAGGGACG 58 20631492 20631752 ATATAGCAGTATCCATCGGC 58 NA Drosophila melanogaster 50 eRF1 FBgn0036974 FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177 2 6 6 81 3L 20344340 20344433 AATTTCTCAGGATACTGGCA 58 20344477 20344495 GAGAGTCTCTACAGAGCCA 59 NA Drosophila melanogaster 50 CG7668 FBgn0036929 FBtr0074904,FBtr0074905 1 2 2 89 3L 19997456 19997528 ATGAACTGTAACTTGAACGG 58 19997580 19997598 ACCAACATTCCAATTACCC 57 NA Nonspecific Drosophila melanogaster 50 Paps FBgn0020389 FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885 3 6 6 94 3L 19853426 19853508 CTAGACAGCATGGAGATCC 58 19853566 19853584 AACTCATCCTTCCTCTTGG 58 NA Drosophila melanogaster 50 Kap-alpha1 FBgn0024889 FBtr0074881 1 1 1 96 3L 19802100 19802186 CTGCTATTACATCCTCAGCA 59 19802245 19802263 CCAATATCACCTGGGTCTG 59 NA Drosophila melanogaster 50 ash1 FBgn0005386 FBtr0074970 1 1 1 167 3L 19584792 19584810 GAATTAGACGTAGGAGCCG 59 19584573 19584664 CTTAAGCATCTGTTTATTGGGC 59 NA Drosophila melanogaster 50 CG18811 FBgn0042134 FBtr0075098 2 1 1 175 3L 18664680 18664698 CAAATACGATGCTGTCCTG 58 18664468 18664486 GCACGTTCTGAATGATCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5506 FBgn0036766 FBtr0075157 1 1 1 60 3L 17877256 17877275 ACGTTATTCCCTATAATGCC 57 17877215 17877233 ACATAGGTGGTAAATCCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nrt FBgn0004108 FBtr0075323,FBtr0075322 2 2 2 217 3L 16767347 16767365 AGGACGAACAGAAATCTCG 59 16767609 16767627 TATCATGTTAGCGATTGGC 57 NA DesignNoJunction Drosophila melanogaster 50 Lasp FBgn0063485 FBtr0075350,FBtr0100145 2 2 2 65 3L 16674042 16674350 CAAATTTACACAGGTGGCC 59 16673995 16674014 GATATGTGCTTCGTGTTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 Mipp1 FBgn0026061 FBtr0075398,FBtr0075399 3 2 2 148 3L 16558057 16558148 TGACACTTACTACCAGTTCC 58 16557928 16557946 AATAGTCATAGGGACGCAG 58 NA Drosophila melanogaster 50 Eig71Eh FBgn0014848 FBtr0075583 2 1 1 60 3L 15652348 15652370 GGATGTAGAAACAGAGTTAGAGG 59 15652310 15652329 GAAGTTCGCAAAGATTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7739 FBgn0036509 FBtr0075596 1 1 1 60 3L 15554264 15554283 TCGTCTTTATCATCCTTGTG 57 15554223 15554241 AAGCGTTCCTGTTTATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tom FBgn0026320 FBtr0075620 3 1 1 105 3L 14962523 14962542 CACAATGTCGTTCATCACAC 59 14962610 14962628 GACCAGTTTCCTCAGACTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100044,FBtr0100043 2 2 6 100 3L 14219494 14223284 CAATGAGCAACTGGAACTG 59 14223348 14223366 CTGCATATTCGGTCTTGGT 59 NA Drosophila melanogaster 50 CG10738 FBgn0036368 FBtr0075805 3 1 2 133 3L 13458085 13458162 TCATCGCTATCACAGTGAC 59 13458259 13458277 CAATACTTTGGCAGGACAG 58 NA Drosophila melanogaster 50 CG11251 FBgn0036346 FBtr0075891 1 1 1 60 3L 13082218 13082236 GGATACTTTCCTCCCACTG 59 13082176 13082194 GTTTAAGTCTGGCACATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or69a FBgn0041622 FBtr0075901,FBtr0075902 2 2 2 115 3L 12957619 12957639 GCTACGAAACCTTATATGTGG 58 12957461 12957479 TATTTAAGGGACCGCACAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11006 FBgn0027534 FBtr0075927,FBtr0075929,FBtr0114506,FBtr0075928 2 4 4 85 3L 12803756 12803840 TGATGAAGATCGATGAGAAGG 59 12803887 12803905 CAATGATAGAACGCCTGTG 58 NA Drosophila melanogaster 50 snRNP69D FBgn0016940 FBtr0075952 1 1 1 98 3L 12727056 12727074 GAAGCTAAGTCACGAGACC 59 12726976 12726994 TTCAGGTGAGTGTTCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32111 FBgn0052111 FBtr0075910 1 1 1 91 3L 12638264 12638282 ATATCGTCATTCAGCTTCG 57 12638394 12638471 GTGAGATATCATGTTCTCTAGC 57 NA InUTR Drosophila melanogaster 50 Gap69C FBgn0020655 FBtr0075981 2 1 1 102 3L 12409094 12409384 CTCGACAAAGATTAAAGAGGG 58 12408937 12408956 ATTATTCCAACCTCGTTTGC 58 NA Drosophila melanogaster 50 CG10361 FBgn0036208 FBtr0076084 2 1 1 121 3L 11793262 11793280 CAACTACTTAGGACTGGCG 59 11793098 11793116 GCTTGTGTATATCCTGCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG11726 FBgn0036156 FBtr0076172 2 1 1 60 3L 11388198 11388217 ATCCGTTCTCTAACCATTCC 59 11388240 11388258 TTTCCACATACGCAAATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7888 FBgn0036116 FBtr0076200,FBtr0076199,FBtr0076201 2 3 3 83 3L 11052193 11052269 GGTGTTAAGCAACTTTGTG 57 11052316 11052334 AGTACGATCTCCTTGAGTG 58 NA Drosophila melanogaster 50 CG34050 FBgn0054050 FBtr0100105 1 1 1 60 3L 10938129 10938147 ACAATTTGCTTGATAGGCG 58 10938171 10938189 ACAGATAGCACGAGTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12362 FBgn0036082 FBtr0076282,FBtr0076281 3 2 2 60 3L 10406346 10406365 CGATGAGGTGAATAATGTCC 58 10406385 10406406 GTGATTTAGGATAATACGCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nudE FBgn0036059 FBtr0113158,FBtr0113159 3 2 4 96 3L 9894107 9894449 ATTCGCTTAAGAATCCCGA 58 9894509 9894527 TTTCTTAACATGTCGGCCA 59 NA Drosophila melanogaster 50 CG6707 FBgn0036058 FBtr0076356,FBtr0076358,FBtr0076357 3 3 3 83 3L 9889096 9889114 CTGGTGTTCCTCATCACAG 59 9888950 9888969 GTAGAGGAAGTACATGCCAC 59 NA DesignNoJunction Drosophila melanogaster 50 Tequila FBgn0023479 FBtr0076526,FBtr0076525,FBtr0076528 2 3 4 100 3L 9082961 9082979 AAAGATGAGGCTAACTGCC 59 9083042 9083131 CATTGACCATTAGCCTTGAC 58 NA Drosophila melanogaster 50 Argk FBgn0000116 FBtr0112791 3 1 6 107 3L 9043448 9057571 GAAATACGCAAACAAGACAC 57 9043360 9043378 GTACTTCTTCAACAGCGAC 58 NA Nonspecific Drosophila melanogaster 50 CG5068 FBgn0035951 FBtr0076519 1 1 1 159 3L 8980480 8980835 TGATACGTTGGCTAAGGAC 59 8980958 8980976 ATCGATGACGGTTATTCCA 58 NA Drosophila melanogaster 50 CG32024 FBgn0052024 FBtr0076580 3 1 1 60 3L 8800787 8800806 CGAGTGCAATATCTGTTCCT 59 8800827 8800847 TTGGTACTGATTCTTGGACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6694 FBgn0035900 FBtr0076656 3 1 1 100 3L 8501329 8501444 CATCTGTGTCAGCTTTCTG 58 8501247 8501265 GCAAATAGTACCGACAGAC 57 NA Drosophila melanogaster 50 CG7081 FBgn0035876 FBtr0076602 3 1 1 94 3L 8332836 8332854 TGGACTACATTAGTCTGCG 58 8332910 8332984 GAGGATTTCCATAAATCCTCC 57 NA Drosophila melanogaster 50 CG7194 FBgn0035868 FBtr0076714 2 1 1 60 3L 8296410 8296428 TACTTCAAGACTGGCTACG 58 8296368 8296388 GCAATTGTCTGATTAGACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076777 2 1 8 84 3L 7813118 7846291 GCATTAATGGCAGGAAATCTC 59 7811290 7811311 CAGATGATCTCTTTGCTATTCG 59 NA Drosophila melanogaster 50 CG32369 FBgn0052369 FBtr0076783 1 1 2 82 3L 7774079 7774100 CTGAGCCATTATCAAAGTTCTC 59 7773960 7774036 CTTAAGTAGTGGGCCTTGG 59 NA Drosophila melanogaster 50 Hn FBgn0001208 FBtr0100225,FBtr0076811 2 2 2 114 3L 7755647 7755730 ATTGTCCACCATCTTCTGG 59 7755808 7755826 GAGGCAATACTCCAGTTCC 59 NA Drosophila melanogaster 50 CG8219 FBgn0035693 FBtr0077003 3 1 1 110 3L 6196516 6196598 GATTCGAAGAATTATCGAAGGC 59 6196669 6196687 TCGTACAGTTCGATTAGCC 59 NA Drosophila melanogaster 50 l(3)mbn FBgn0002440 FBtr0100355,FBtr0077062 2 2 2 89 3L 6117829 6117915 ATGTACCCTCAAATGGTGG 59 6117758 6117776 CTCCTGCACCGATAATACC 59 NA Drosophila melanogaster 50 Pole2 FBgn0035644 FBtr0077081 1 1 1 60 3L 5889892 5889913 TAAAGAGGGCAAGTTCTATGTC 59 5889853 5889872 TCCAGTGAGATCTAACTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sif FBgn0085447 FBtr0112712,FBtr0112708 2 2 8 89 3L 5670041 5697035 CATCAGAGATTTCGGACGA 59 5697088 5697106 TATATGGTGACGCCATGAC 59 NA Drosophila melanogaster 50 sinu FBgn0010894 FBtr0077136 3 1 1 62 3L 5554199 5554218 GTTCTTCTACACTTTGGCCT 59 5554156 5554174 ATGAAGACCAGTACTCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13705 FBgn0035582 FBtr0073352 1 1 1 60 3L 4897684 4897702 GTTACCGTTACAAGACCGT 59 4897726 4897744 GGAAGCTCATTGACATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13712 FBgn0035570 FBtr0073364 3 1 1 263 3L 4709828 4709846 ATTCCAGCTACAGCAACTG 59 4709583 4709602 ATCTGTCCCTATATTCCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DopEcR FBgn0035538 FBtr0100185,FBtr0100186,FBtr0073337 3 3 3 60 3L 4379449 4379467 AAACTGAGCAATGTCAAGG 58 4371891 4379425 CTAATTGTGCGCATCTGAG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG11582 FBgn0035525 FBtr0073241 3 1 1 61 3L 4283213 4283232 TGGAATAAGTGTCGACAGAC 59 4283171 4283189 TCATGAAACCACCTGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14998 FBgn0035500 FBtr0113135 1 1 6 97 3L 4127159 4128322 TGTTAGTGAATGCAGGCTC 59 4127080 4127098 CATGTTTGTCGATGTGGAC 59 NA Drosophila melanogaster 50 scrt FBgn0004880 FBtr0073165 1 1 1 60 3L 3986870 3986888 CTATCGAAGAAGGGTACCG 58 3986911 3986930 CAGATCCAGGATAGCATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10863 FBgn0027552 FBtr0073171 3 1 1 85 3L 3941429 3941448 ACATCTATGATGCCAAGGTG 59 3941296 3941384 AATCTCAATCAGATATCGGAGC 59 NA Drosophila melanogaster 50 Awh FBgn0013751 FBtr0073156 3 1 2 106 3L 3860664 3860682 GCGTCATATTAACCTGCAG 58 3860752 3860899 TAGAGGATTCATGAGTCGG 57 NA Drosophila melanogaster 50 enc FBgn0004875 FBtr0073153 2 1 4 229 3L 3832330 3832348 TATCACTATGAGCCCAGAG 57 3832541 3832617 TCTGATTGATGAAAGACGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG10357 FBgn0035453 FBtr0073137 3 1 1 102 3L 3616069 3616087 ACTGTGGACTTCTATCCGA 59 3616153 3616230 TGCAACTATAAGCCTCGTG 59 NA Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0110922,FBtr0073132,FBtr0073135,FBtr0110924,FBtr0073131,FBtr0073134,FBtr0110923,FBtr0110920,FBtr0110925,FBtr0073133,FBtr0110921 1 11 11 117 3L 3552857 3578300 CAGATTAACAATTTCCCGCG 59 3578377 3578398 GTTGTATGGAACTTTGTTACCG 59 NA Drosophila melanogaster 50 kst FBgn0004167 FBtr0073071 3 1 4 197 3L 3366301 3367161 AGACAATCGGGTTCTTCAG 59 3367621 3367639 GGACACGGATGATATCGAC 59 NA Drosophila melanogaster 50 CG16753 FBgn0035393 FBtr0072990 1 1 1 92 3L 3055322 3055340 ACAAGAAGCTGCTCAAGAG 59 3055394 3055414 TTAGATCTCCGACAACTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pxn FBgn0011828 FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951 1 4 5 110 3L 2607768 2607786 TCAAGAATGTGACCATCCC 59 2604263 2607695 CCAAATCCACGTTGTTTCTG 59 NA Drosophila melanogaster 50 CG5707 FBgn0026593 FBtr0072912 2 1 1 60 3L 2189702 2189720 AGGACCATCAAGAATGTGC 59 2189660 2189679 CGTCTATGTAGTTCGACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7991 FBgn0035260 FBtr0072765 1 1 1 169 3L 1712776 1712853 ATTAAGGGATGCCTATTGTCC 59 1712984 1713002 CATAGTCGGAGCTGTACTC 58 NA Drosophila melanogaster 50 metl FBgn0035247 FBtr0072813,FBtr0072814 1 2 2 60 3L 1638099 1638117 GACTGCAAGTTAATCGCTG 59 1638057 1638076 AACTTTGTCTGAATCCACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 n-syb FBgn0013342 FBtr0072815,FBtr0072817,FBtr0072816,FBtr0072819 1 4 5 271 3L 1635219 1635237 ATGATGATCATCATGGGCG 59 1632235 1632253 TCGAGAAACTTTCGTCCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Psa FBgn0035226 FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697 1 6 6 113 3L 1520667 1520685 GAGACCTTTGTGCTAGTGG 59 1520761 1521150 CATAGTTACCAGATTGCCGA 59 NA Drosophila melanogaster 50 mtacp1 FBgn0011361 FBtr0072677 3 1 2 213 3L 1330899 1330917 ATCGAGGACATCAAGTTCC 59 1331409 1331427 ACTTAATAATGTCGGCAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG34264 FBgn0085293 FBtr0112459 2 1 1 65 3L 317252 317270 GGACGACCCTAATATGGTG 59 317299 317317 AAGTTTCGCTTCAGAAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13882 FBgn0035126 FBtr0072509 2 1 1 91 3L 290252 290271 TAAATCTTGAGGTTGCAGTG 58 290325 290765 GAACTCCGCTTTAACACTG 58 NA Drosophila melanogaster 50 CG12313 FBgn0035124 FBtr0072507 1 1 1 60 3L 276333 276351 CGACAATGACACTACCCTC 59 276374 276393 CTCACTCGTTCCTAGAACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16940 FBgn0035111 FBtr0072486,FBtr0072485 1 2 3 84 3L 213967 214040 TTATCTCTTGCGGATGGTG 59 214088 214106 ATATCACGACCACGTTGTC 59 NA Drosophila melanogaster 50 5SrRNA:CR33411 FBgn0053411 FBtr0086403 1 1 1 62 2R 15632320 15632338 AATACATCGGTTCTCGTCC 59 15632276 15632294 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Kr FBgn0001325 FBtr0072449 1 1 1 60 2R 21115758 21115779 GTCCCTATACTTGTGAAATCTG 58 21115800 21115818 TGGGACTTAAGCTGATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 zip FBgn0005634 FBtr0072398,FBtr0072399 3 2 4 101 2R 20885211 20885809 GTGCTCATTAACTTCTCGG 58 20885128 20885149 CATCTTCAATCCATTGACTACC 58 NA Drosophila melanogaster 50 slik FBgn0035001 FBtr0072365,FBtr0072363,FBtr0100470,FBtr0072364,FBtr0072366 3 5 5 82 2R 20287856 20287941 CCTTAGTCAAAGATCCGCA 59 20287792 20287810 CTTGGCATCCAGATTTCTG 58 NA Drosophila melanogaster 50 CG3328 FBgn0034985 FBtr0072257 2 1 1 175 2R 20059785 20059858 CAATTGTCAGTCCGTTTGC 59 20059996 20060015 AGGTCTCATTGCCTATTGAG 59 NA Drosophila melanogaster 50 CG13568 FBgn0034965 FBtr0113115 3 1 2 92 2R 19941236 19941325 GGTTTCCTTACAGCTTCTC 57 19941162 19941182 GATCCTTTGGGTTGAATAGAG 58 NA Drosophila melanogaster 50 CG13567 FBgn0034963 FBtr0072189 2 1 2 152 2R 19924622 19924641 CCCACTGAGTTTATTCACCT 59 19924429 19924509 GAATAGTTCCCTAACGTTCAC 58 NA Drosophila melanogaster 50 MAN1 FBgn0034962 FBtr0072166,FBtr0072167 2 2 2 60 2R 19922796 19922815 GAAGTTCAACTATCCCACTG 57 19922836 19922856 AGTTAGCCTTTCTTTCCTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fmo-1 FBgn0034943 FBtr0072150 2 1 1 135 2R 19851708 19851726 TACTACAACGGATCCAACG 59 19851824 19851907 AATAGTCGATTTGCTTGGGA 59 NA Drosophila melanogaster 50 CG13551 FBgn0040660 FBtr0072034,FBtr0072033,FBtr0072035 2 3 3 251 2R 19265691 19270146 TACAAGAAGCAAAGGGAGC 59 19265458 19265476 GGTAAGTGGTAGTGAGCAC 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG13551 FBgn0040660 FBtr0072034,FBtr0072033,FBtr0072035 3 3 3 194 2R 19265691 19270146 TACAAGAAGCAAAGGGAGC 59 19265515 19265533 AATGTCTCGAGTTCATCCG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 Gr59c FBgn0041235 FBtr0071977 1 1 1 60 2R 18990427 18990447 CTCCATCTACTTTAGCGTCTG 59 18990387 18990405 GTATGTAGAGCCGAATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PIP5K59B FBgn0034789 FBtr0110862,FBtr0071900 3 2 3 166 2R 18767408 18767426 TCTGGATACATTACTGGCG 58 18767555 18768009 TTAGTTGATCGAGATCACCA 58 NA Drosophila melanogaster 50 CG3649 FBgn0034785 FBtr0071896 3 1 1 96 2R 18735015 18735033 GACTCCTGTTTGGGATGAG 59 18735093 18735161 GATCGATCCGACTCTTTGG 59 NA Drosophila melanogaster 50 CG30270 FBgn0061435 FBtr0089763,FBtr0089762 3 2 2 60 2R 18672243 18672261 CGCATCTACAAGACCTACC 59 18672283 18672303 TAAGTCGTTCGTAATACTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30275 FBgn0050275 FBtr0071874 3 1 4 125 2R 18595820 18595838 ATCCACTTTGTGGAAACCT 59 18595927 18596200 GTTATCTTCGGCCCTATCC 59 NA Drosophila melanogaster 50 Rtf1 FBgn0034722 FBtr0071820 1 1 1 172 2R 18264935 18264953 GAAGATGACATGCAACTGG 58 18265089 18265164 TTCGTATTGACTGGTAGCG 59 NA Drosophila melanogaster 50 CG34207 FBgn0085236 FBtr0112400 3 1 1 60 2R 18217001 18217021 GAAGATAACGAATTGGCACTC 59 18216961 18216979 CTTCCTCCTTTACGTAGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gp150 FBgn0013272 FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815 3 4 4 83 2R 18213223 18213296 GAAGTCCAAGAGCAAATCC 58 18213341 18213361 TCGTCGTAGTCATATTGAGAG 58 NA Drosophila melanogaster 50 Gp150 FBgn0013272 FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815 3 4 4 83 2R 18213223 18213296 GAAGTCCAAGAGCAAATCC 58 18213341 18213361 TCGTCGTAGTCATATTGAGAG 58 NA Drosophila melanogaster 50 Oatp58Dc FBgn0034716 FBtr0113105,FBtr0071777 1 2 2 80 2R 18113468 18113488 CTATACTACACGTTGGGAGTG 59 18112902 18113429 GTATGAAAGACTCAACAAAGCC 59 NA Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089710,FBtr0089703 1 2 9 129 2R 17399440 17399460 CCGTCTAGATCCTACAAACTC 59 17399675 17399908 GAAGTACTTGACGTAGCCC 59 NA Drosophila melanogaster 50 Treh FBgn0003748 FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536 1 6 6 80 2R 16972826 16972845 CTTTAATGCCATGATGGAGG 58 16972887 16972966 GCACTGAAGTACTTATCGAC 58 NA Drosophila melanogaster 50 Act57B FBgn0000044 FBtr0100177 2 1 2 94 2R 16831678 16831696 GAACGGATTATCGTCTTGG 57 16831753 16831772 ACTAGATGCGGGAATATCCT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Obp57c FBgn0034509 FBtr0113099,FBtr0086292 3 2 2 60 2R 16391191 16391211 TATGTATCTTGACTGTCAGCG 59 16391295 16391313 TTGGTTTCCTCCAGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11192 FBgn0034507 FBtr0086296 2 1 1 65 2R 16241851 16241870 TATATGGCATCGTTTCCTGG 59 16241805 16241823 CATTGGTGTACACTCCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18367 FBgn0034460 FBtr0086469 3 1 1 61 2R 15524251 15524269 CTTCAAGAAGCAGTTCAGC 59 15524294 15524312 TCAGCCATGACTTGATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494 2 7 7 151 2R 15418201 15419688 TATTGAGGGTAAAGGCACC 58 15418068 15418088 CTCAATTGTAGATGTCCACCT 59 NA Drosophila melanogaster 50 CG15904 FBgn0034458 FBtr0086497 2 1 1 60 2R 15400864 15400884 GAGTTCTTCCACAATTTCTGG 59 15400824 15400845 CTCTCGTTATTATCAAGTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15105 FBgn0034412 FBtr0086572,FBtr0114622,FBtr0086573 3 3 3 114 2R 14882548 14882566 GATACCCTACAATGGCGTC 59 14882642 14884407 CATAATTTGACCTGATGTGGG 59 NA Drosophila melanogaster 50 CG15100 FBgn0034401 FBtr0086627 3 1 1 108 2R 14735331 14735409 CTCAATGCTGAGAAACCAC 58 14735241 14735260 TAAGTTCGTCGATGAAGGAC 59 NA Drosophila melanogaster 50 l(2)03709 FBgn0010551 FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616 3 6 6 192 2R 14707869 14707887 AGATGATCAACATCTCGCT 58 14708043 14708123 ATGAGTAGGGATACCTGCT 59 NA Drosophila melanogaster 50 CG5224 FBgn0034354 FBtr0086697 3 1 1 202 2R 14391271 14391289 CATCCTCTATTACGCTCCC 59 14391851 14391869 AGATAATGTGCGAATCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG30116 FBgn0028496 FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718 1 4 4 80 2R 14363668 14363687 GAGGCTATGTTGGTTAAGTG 58 14363165 14363627 GTTCATAAGGCGATAATCCTG 58 NA Drosophila melanogaster 50 CG30116 FBgn0028496 FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718 1 4 4 80 2R 14363668 14363687 GAGGCTATGTTGGTTAAGTG 58 14363165 14363627 GTTCATAAGGCGATAATCCTG 58 NA Drosophila melanogaster 50 fj FBgn0000658 FBtr0086754 1 1 1 60 2R 14122487 14122506 GAATACGGATCAGATTCAGG 57 14122529 14122547 TATGTTTAAGAGCTGGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dip3 FBgn0040465 FBtr0086734 1 1 1 136 2R 14016521 14016539 CTATGATGTCAGCCATCCG 59 14016715 14016734 CCTGCAGATAGTTGTATCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG34005 FBgn0054005 FBtr0100060 3 1 1 135 2R 13935949 13935967 TCAGGAGGAGATTCGAGAG 59 13936121 13936140 TATACTGTAGACATTCGCCA 57 NA DesignNoJunction Drosophila melanogaster 50 grh FBgn0004586 FBtr0090012 2 1 6 196 2R 13727107 13727125 AGGATCACATACTGGACCA 59 13727285 13728261 GCAGTAATCCGCATTTAGC 59 NA Drosophila melanogaster 50 CG4996 FBgn0034271 FBtr0086864 2 1 1 87 2R 13627854 13627932 GAACTCAAGAAAGTTCTCAACG 59 13627979 13627998 TAAGAACCTTCTGCTGAGTG 59 NA Drosophila melanogaster 50 CG6424 FBgn0028494 FBtr0086887,FBtr0086886 1 2 2 121 2R 13592685 13593866 TCGAGCAGAATTTGAACGA 59 13592582 13592600 CTCAAAGTACAGCAGTCCA 59 NA Drosophila melanogaster 50 CG4966 FBgn0034261 FBtr0086840,FBtr0086839 2 2 2 83 2R 13577313 13577390 ATCTTGAGATCCAACGACTC 59 13577436 13577454 GATCTGATGGGTAGGTTCC 58 NA Drosophila melanogaster 50 qkr54B FBgn0022987 FBtr0086925,FBtr0086923 2 2 3 81 2R 13359114 13359202 GCATCACAGCTATAGGAGC 59 13359244 13359265 CAATATGGACATCACTTTCTGC 59 NA Drosophila melanogaster 50 CG34415 FBgn0085444 FBtr0112692,FBtr0112691 3 2 2 71 2R 12837688 12837706 CTGATCGATTGGTTTGTGC 59 12837574 12837593 GGTCTCTACAGGAGAAAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 Picot FBgn0024315 FBtr0087115,FBtr0087114 1 2 2 80 2R 12544694 12544784 TCGGGATATTCCTATTGATGAC 59 12544635 12544653 AAGGACGACAAGATGTAGC 59 NA Drosophila melanogaster 50 CG4439 FBgn0034132 FBtr0087087 2 1 1 60 2R 12379672 12379691 CAGAATCTCAACTCCTTCCT 58 12379714 12379732 CTAGGATAATGGGTGGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7997 FBgn0034117 FBtr0087172,FBtr0087171 3 2 2 99 2R 12229052 12229071 TAATGTGCAGGATCTGTACG 59 12228913 12228991 GTAGAAAGTTACGCCATTGG 58 NA Drosophila melanogaster 50 CG7798 FBgn0034092 FBtr0087192 3 1 1 62 2R 12109785 12109804 CGAAGTACATCAGGAAACAG 58 12109742 12109760 CCTGACATCGATTGTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8445 FBgn0034088 FBtr0087246,FBtr0087245 1 2 2 210 2R 12083400 12083418 AAATATGAACGCTGCTGGA 59 12083149 12083226 CTGTACATCGTGACATCCA 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Lis-1 FBgn0015754 FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240 1 6 6 63 2R 12070571 12070592 GCTCAAATGATCAGACAATACG 59 12070615 12070701 CGTAATTCAACCTTGCAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 Dg FBgn0034072 FBtr0087258,FBtr0087257,FBtr0087256 2 3 3 101 2R 11972594 11972679 CTTTATGGCCTACCTCTGG 59 11972511 11972529 ACTTATCTCCACGGTTTCC 58 NA Drosophila melanogaster 50 CG8315 FBgn0034058 FBtr0087267 1 1 1 60 2R 11879338 11879358 AATAAGTACTGGCTCTTCTCG 59 11879298 11879316 TCAGGATCTCGTAGAAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30084 FBgn0083919 FBtr0113484,FBtr0111048,FBtr0100387,FBtr0087315 1 4 6 92 2R 11652754 11660560 ATAATGTGTACCGAGGTGC 59 11652680 11652699 CTGCCTTATTCAGGATACCC 59 NA Drosophila melanogaster 50 CG12960 FBgn0034023 FBtr0087327 3 1 1 60 2R 11387762 11387780 GCGAGACTAAGATGATGGG 59 11387804 11387822 TTCAGTTTCTGGGCATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8617 FBgn0033925 FBtr0087561 3 1 1 67 2R 10243738 10243756 CGATTTGAGCATCATGAGC 59 10243689 10243707 TCATTGAAGCTCATTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ih FBgn0028428 FBtr0100370,FBtr0100369,FBtr0100371 1 3 4 101 2R 10179879 10184219 AGGTCTATTTCCTCAATATGGC 59 10184281 10184299 CTAAGAACTGCAAGCAACC 59 NA Drosophila melanogaster 50 Ih FBgn0028428 FBtr0100370,FBtr0100369,FBtr0100371 1 3 4 101 2R 10179879 10184219 AGGTCTATTTCCTCAATATGGC 59 10184281 10184299 CTAAGAACTGCAAGCAACC 59 NA Drosophila melanogaster 50 DJ-1alpha FBgn0033885 FBtr0087615 1 1 1 290 2R 9830543 9830561 ATACTTCACTGGAAGAGGC 58 9830215 9830233 TTATGTTGCCATCCTGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 synaptogyrin FBgn0033876 FBtr0087645 3 1 1 60 2R 9731512 9731530 GAGCAGAAAGCGTTATGTC 58 9731399 9731417 GTACATGAATGTCCAGAGG 57 NA DesignNoJunction Drosophila melanogaster 50 IM10 FBgn0033835 FBtr0087654,FBtr0087655 2 2 2 60 2R 9295341 9295360 TTTGGGACAATAATGTCTCC 57 9295383 9295401 CTATCGATTGTGACAGTGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 bic FBgn0000181 FBtr0087783,FBtr0087782 3 2 2 143 2R 8757979 8757997 GAAGAAGATCGTCCACTCC 59 8758103 8758122 GGATTGTTGAAGTGGATGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30051 FBgn0050051 FBtr0114521 2 1 1 94 2R 8323931 8324024 TTCCTAGTACTGTTGCTGG 58 8324081 8324100 TCGAAGTATTGTTGTCTGGA 58 NA Drosophila melanogaster 50 CG30050 FBgn0050050 FBtr0087923 1 1 1 98 2R 8296846 8296864 AAGCGGAAGATTCTCATCG 59 8296924 8296994 CGACTCAAATTTACCCTTTGG 59 NA Drosophila melanogaster 50 CG30048 FBgn0050048 FBtr0100374,FBtr0087919 1 2 2 60 2R 8285320 8285339 CATCCACTCACAAACTTCAG 58 8285362 8285380 ATTTCTCTTACGGATGGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13169 FBgn0033704 FBtr0087997 3 1 1 191 2R 8128916 8128934 AAAGGAATTGCTCATCCAC 57 8129152 8130051 TTTCAATATCACTTCCGCAG 58 NA Drosophila melanogaster 50 CG13170 FBgn0033703 FBtr0087996 3 1 1 89 2R 8127923 8127941 CTTCTGAGTCTGTCGACAG 59 8127994 8128012 TAACTTGGGTGTGGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rep3 FBgn0028407 FBtr0087980,FBtr0087979 1 2 2 124 2R 7943777 7943795 GGATAGCATCACCTTGGAG 59 7943883 7949022 TGTCCTTGATCTTGAAGGG 58 NA Drosophila melanogaster 50 ERp60 FBgn0033663 FBtr0088059,FBtr0088058 3 2 2 84 2R 7776136 7776155 ACAAGTTCGAGTCATCTTCC 59 7776007 7776089 AGACCATGGAAGTTCTCCT 59 NA Drosophila melanogaster 50 inv FBgn0001269 FBtr0088070,FBtr0088067 3 2 4 108 2R 7394461 7394532 ATTTATGGAGTATCCGCCG 59 7394603 7394622 ACACAATCATAGCTCTTCGG 59 NA InUTR Drosophila melanogaster 50 sprt FBgn0082585 FBtr0088146 3 1 1 93 2R 7274233 7274252 TAAACAGACTGAAGACGGAG 59 7274093 7274179 TCTATGTTGTCTGTGATGTCC 59 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 2 9 9 198 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349188 6349206 CTTAGTACAGTCCACAGCC 59 NA Drosophila melanogaster 50 CG12900 FBgn0033515 FBtr0088323 2 1 1 60 2R 6266224 6266243 CAAGACGTAAGAAGATCCTG 57 6266183 6266204 GACAGAATGCAACTAAATACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TER94 FBgn0024923 FBtr0112905,FBtr0088391,FBtr0112906,FBtr0088392 3 4 4 102 2R 5880410 5880494 GACAGAACTTCAGATTCCC 57 5880560 5880578 CTGTAAAGATCATCGTCGC 58 NA Drosophila melanogaster 50 CG1441 FBgn0033464 FBtr0088449,FBtr0088448 2 2 2 106 2R 5786879 5786897 AGTCAGACGAATCGATTCC 59 5786721 5786740 ATAGAGCATGTAGAGGATGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG1441 FBgn0033464 FBtr0088449,FBtr0088448 3 2 2 107 2R 5786879 5786897 AGTCAGACGAATCGATTCC 59 5786720 5786740 TATAGAGCATGTAGAGGATGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG33757 FBgn0053757 FBtr0091758 2 1 1 75 2R 5342047 5342065 ACCTTACATCCCAATGACG 59 5341937 5341955 AAATTCGAGGTCGGTACAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8046 FBgn0033388 FBtr0088620 1 1 2 82 2R 5051972 5052051 GAAACAAAGAGAATTGAGGAGC 59 5051911 5051929 GGAATAAAGCACTCCACCA 59 NA Drosophila melanogaster 50 CG8197 FBgn0033369 FBtr0088661 3 1 1 60 2R 4949143 4949163 GGATCATCGTTAACTATCTGC 58 4949103 4949121 ACCAAGCTGGAAATTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14747 FBgn0033306 FBtr0088732 2 1 1 80 2R 4468409 4468539 AAGGGAATAACAACCGACC 59 4468347 4468366 TTTCATCCATGGGATAACCA 58 NA Drosophila melanogaster 50 CG12826 FBgn0033207 FBtr0088943 3 1 1 91 2R 3558415 3558433 ATTGTACTCGTGGATCTGC 59 3558342 3558361 TTTCGTAGCTATCCAAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1620 FBgn0033183 FBtr0088983 2 1 1 69 2R 3382379 3382399 AGGACTTCTATCAGATACGTC 58 3382262 3382280 TAGTAGAAATGGACCAGCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG30502 FBgn0050502 FBtr0089001 1 1 1 126 2R 3334678 3336933 ATAGTATGGAGCACCTAGTG 57 3334571 3334589 TACCAAGGGTCAAAGAGAC 58 NA Drosophila melanogaster 50 CG1707 FBgn0033162 FBtr0089013 3 1 1 143 2R 3283096 3283114 TTCTCGCTGTACTTTCTGG 59 3281430 3281449 GTAATTCTGATCCGGATCCC 59 NA DesignNoJunction Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111061 3 1 60 99 2R 3244103 3244121 GCAGGATAAGTTTGGTGTG 58 3236471 3244041 CTTGTACCATCTAAACGCTG 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111102,FBtr0111095 2 2 60 97 2R 3236477 3243205 CGTGCCCTTCTATAGATGG 59 3236398 3236416 TGAGAGTACCAGAGACCTG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111056 3 1 60 81 2R 3226195 3226214 GCAAATATAGTTGTCGAGCG 59 3219873 3226152 CATCTGGGAGGTACATTCAC 59 NA Drosophila melanogaster 50 esn FBgn0028642 FBtr0089039,FBtr0089038 1 2 2 161 2R 3012688 3012927 TGCGATGAGATCATCTTCTC 59 3013051 3013069 GAACATTGTGTCGAAGCAG 59 NA Drosophila melanogaster 50 Tsp42Ef FBgn0033127 FBtr0089023 2 1 1 131 2R 2914540 2914558 AACCTAAACGAGATCGGTC 59 2914652 2914732 AATAATGAACGTCACTGTGC 58 NA Drosophila melanogaster 50 CG33558 FBgn0053558 FBtr0113470 3 1 2 149 2R 2814318 2816023 CACTTTGACGACTATGCCA 59 2814187 2814205 GTTGATGAGATTTCGCACG 59 NA Drosophila melanogaster 50 CG7849 FBgn0033060 FBtr0085977 2 1 2 140 2R 1964754 1964774 ACATAACATAGGAGAGCAGAC 59 1964876 1964943 CTGTTGATCCCAAAGAGCA 59 NA Drosophila melanogaster 50 CG30438 FBgn0050438 FBtr0086068,FBtr0086069,FBtr0086070 3 3 4 98 2R 1414858 1414876 GGACATCCTAATGGCTACG 59 1416315 1426768 AAGGTAATATTGTGACCTCTGG 59 NA Drosophila melanogaster 50 CG41441 FBgn0084006 FBtr0111282 2 1 1 132 2R 969953 969971 AGAACTCATTCCGTTGTCC 59 970207 970225 GATCTTAAAGCGAACCTCG 58 NA DesignNoJunction Drosophila melanogaster 50 nrv3 FBgn0032946 FBtr0081520,FBtr0081518,FBtr0081521,FBtr0081519 1 4 4 88 2L 21385322 21385341 ACATTAGTTTGGTACGAGTC 57 21385391 21388515 AGATCTTGGTACGATTTCAG 57 NA Drosophila melanogaster 50 CG9259 FBgn0032913 FBtr0081464 3 1 1 60 2L 21090657 21090676 TTATTCTACCACCTCACTGC 59 21090699 21090717 AAGTCGTTAAAGCCATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9266 FBgn0032909 FBtr0081434 2 1 1 77 2L 20966706 20966724 CTAGCAAATACCCAAGTGG 57 20966647 20966665 TAGGATTAGGTGGGTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1962 FBgn0032876 FBtr0081399,FBtr0081400,FBtr0081401 2 3 3 60 2L 20680493 20680512 TAGTGGTGCGGATTATAAGG 58 20680452 20680470 GCTAGAGTTGGGATTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18858 FBgn0042175 FBtr0081364 3 1 1 96 2L 20458123 20458141 TATAGCCAATGAGCTGGTG 59 20457977 20458063 CTGTTGGTTCTCATTTGGC 59 NA Nonspecific Drosophila melanogaster 50 CG40341 FBgn0058341 FBtr0100675 1 1 1 166 2L 20248297 20248315 CAAGAAGTCCAACGAAAGC 59 20253481 20253502 CGCTTTCTGATTTCTTACTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lok FBgn0019686 FBtr0081330,FBtr0081329 1 2 3 291 2L 20061999 20062152 GATCAAATCGCTGGATCTC 58 20062645 20062744 GAATACAAAGGCTTTGTACG 57 NA DesignRelaxed Drosophila melanogaster 50 sick FBgn0085372 FBtr0112547,FBtr0112549,FBtr0112548 1 3 3 84 2L 19926500 19928629 GCAATAGCATAAGATCGACG 58 19928676 19928694 TAGTAGGGCTCGATTTCCA 59 NA Drosophila melanogaster 50 CG13962 FBgn0032824 FBtr0081314 1 1 1 60 2L 19813902 19813920 CTGATATACAGCAGCACGA 59 19813860 19813880 TAGTACCTATCCTTGAAGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bsh FBgn0000529 FBtr0089320,FBtr0089319 1 2 2 72 2L 19767866 19767884 CTGAATGGAGGTAGTGGTG 59 19767812 19767830 GAAGAAATCCGTGATCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10189 FBgn0032793 FBtr0081284 3 1 1 60 2L 19491865 19491884 TTCACTGTCGATCTACACTG 59 19491824 19491842 GAGTACTCAATAGCCAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fon FBgn0032773 FBtr0081222 1 1 2 127 2L 19385700 19386087 GATTTCCAACAAAGTTTGGG 57 19385286 19385304 AAGCTACCGCTATAACCTC 58 NA Drosophila melanogaster 50 CG17349 FBgn0032771 FBtr0081198 1 1 1 265 2L 19370853 19370930 AAACCTCCTCCAAAGATCG 59 19371159 19371177 ATGATGAGGTCAATGGCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG10211 FBgn0032685 FBtr0081069 1 1 1 83 2L 18528767 18528847 GGAGGACAATTATCTGAATTCC 58 18528891 18528909 TCTTCAGGGTTTACTTGCC 59 NA Drosophila melanogaster 50 mdy FBgn0004797 FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917 1 4 4 86 2L 16820786 16820804 ATAACGCCCTAATCCTGAG 58 16820919 16825419 CAATTATTTCCATGGCTAGACC 59 NA Drosophila melanogaster 50 mdy FBgn0004797 FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917 2 4 4 87 2L 16820785 16820804 CATAACGCCCTAATCCTGAG 59 16820919 16825419 CAATTATTTCCATGGCTAGACC 59 NA Drosophila melanogaster 50 CG31812 FBgn0051812 FBtr0080890 1 1 1 60 2L 16730429 16730449 CCTAAGAAGATAAGCTCTTCC 57 16730469 16730489 GCACAATAGTCTCTGTTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trpgamma FBgn0032593 FBtr0080946,FBtr0080945,FBtr0114470 3 3 3 81 2L 16665214 16665233 TCGAGCAAGAATATTTGTCC 57 16665101 16665173 GCTTAAGGGTCTTATCATTCAG 58 NA Drosophila melanogaster 50 CG13260 FBgn0032589 FBtr0080869 2 1 1 60 2L 16558568 16558587 GCTATGCTCGCATTATAGAC 58 16558610 16558628 TCGCTTTCGATAACATGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4440 FBgn0040984 FBtr0080835 2 1 1 80 2L 16329963 16329982 TACTCTTACTCCAGTATCGC 58 16330084 16330102 AAACAGAGCAATCAGACAG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4935 FBgn0028897 FBtr0080825 2 1 1 110 2L 16263172 16263272 TTCGCATAAGTGATAATGGC 58 16263345 16263363 GCAAATCTGTCGAGAAGAC 58 NA Drosophila melanogaster 50 CG31826 FBgn0051826 FBtr0080762 1 1 1 138 2L 15772567 15772586 ACCTTTGGACGATATTTCGT 59 15772389 15772466 TTAGGTCCTCGCATTTCTC 59 NA Nonspecific, InUTR Drosophila melanogaster 50 Ku80 FBgn0041627 FBtr0080763 1 1 1 80 2L 15770836 15770912 GATTCTTAAGGACAAGATCGTG 58 15770777 15770795 TTTATTTCATCGGTGTCGC 58 NA Drosophila melanogaster 50 Mst35Ba FBgn0013300 FBtr0080682 1 1 1 129 2L 14879244 14879262 TAGAAAGGATCGATACCGC 58 14879084 14879102 GGAAAGGATATGCCTGGAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 elB FBgn0004858 FBtr0080636,FBtr0080635 2 2 3 282 2L 14391996 14392244 CCTATTATCCACCCGTTGG 59 14391732 14391750 TTTATGTAGTGCGGACTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG32972 FBgn0028905 FBtr0080600 1 1 2 84 2L 14164078 14164098 TTTCTACCAGGTTAAGGACTC 58 14163422 14164034 GCTATCGTTCTTAATCTTGCC 59 NA Drosophila melanogaster 50 Sos FBgn0001965 FBtr0080541 2 1 1 98 2L 13816691 13816774 TTCAGAGAAAGAACGAGCAG 59 13816835 13816853 CGTTGGGTACACTAAGGTG 59 NA Drosophila melanogaster 50 CG16825 FBgn0032503 FBtr0080463 2 1 1 60 2L 13307518 13307536 GACCATGTACAACTCCCAG 59 13307560 13307578 GTGAGCTACGTAACCAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5787 FBgn0032454 FBtr0080405 2 1 1 165 2L 12709471 12709489 TACCAATTCCAAGTCCACC 59 12709259 12709278 TATAGAGGGAAAGACAGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 Oatp33Ea FBgn0032433 FBtr0080384 2 1 1 80 2L 12444216 12444236 CTACATGTACTTCATCGTCAC 58 12444043 12444175 CTTAGAATTATGCCTGTCGT 57 NA Drosophila melanogaster 50 SC35 FBgn0040286 FBtr0089899,FBtr0089898 1 2 2 63 2L 12433615 12433633 TCTACATACCCAGGGATCG 59 12432715 12433589 TCATAGAAGCGAACAAATGC 58 NA DesignRelaxed Drosophila melanogaster 50 aret FBgn0000114 FBtr0080345,FBtr0080344,FBtr0080346 1 3 4 80 2L 12278911 12282525 CTAAATGGGATGTACCATCCC 59 12298571 12298590 CATACCCACAAAGAGTTTGC 59 NA Drosophila melanogaster 50 CG4705 FBgn0032339 FBtr0080196 3 1 2 121 2L 11092482 11092560 CGAGATACACGCCTATTGG 59 11092644 11092663 CACGAAGGAACAAATAGGGT 59 NA Drosophila melanogaster 50 CG6729 FBgn0032296 FBtr0080119 1 1 1 81 2L 10742716 10742735 GAACACTAAGGATCCAAACC 58 10742596 10742614 ATAGTTCAAGCTCTCGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CYLD FBgn0032210 FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069 2 5 5 80 2L 10296849 10296945 TTCTAAAGCTAAGCTCGGG 59 10296787 10296808 CACTCGGTAATGTTAACTTCTC 58 NA Drosophila melanogaster 50 Hand FBgn0032209 FBtr0080073 3 1 1 95 2L 10294480 10294499 AGCACTGTTTGAAATCAGAG 58 10292792 10292810 CTGGAATAAGTTCCGATGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG18619 FBgn0032202 FBtr0089738,FBtr0089735,FBtr0089737,FBtr0089736 3 4 4 200 2L 10264619 10264767 TGAAAGCCAAACTAGAACG 57 10264990 10265010 GAAGTAACTGGTCATTGTTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG5727 FBgn0032193 FBtr0079958 2 1 1 60 2L 10210115 10210134 TATTCCTGAATCAGATCCGT 57 10210074 10210092 TCCATCCTAAAGAACTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31755 FBgn0051755 FBtr0079972 3 1 1 158 2L 9999228 9999246 ATATCCTGGCAGAACAGGA 59 9999022 9999040 CAAGCATCAACCGATTAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5899 FBgn0032157 FBtr0100280,FBtr0079901,FBtr0100279 2 3 3 92 2L 9910429 9910503 TCGTTGTTTGCTAAGAAGG 57 9910355 9910373 CATGATACGCTTTGCTCTC 58 NA Drosophila melanogaster 50 d FBgn0086896 FBtr0079680,FBtr0079678,FBtr0079679 3 3 3 120 2L 8483305 8483323 CAACTTTGACCTAAACGCA 58 8483407 8483574 GCTGTGATTCTTCGATGTC 58 NA Drosophila melanogaster 50 CG13397 FBgn0014417 FBtr0079711 2 1 1 60 2L 8409745 8409765 GCTAGAGGATAACAGATACGA 58 8409705 8409723 GAATTGCCTGGTTATGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17294 FBgn0032032 FBtr0079651 1 1 1 80 2L 8377726 8377747 CCAATCCTTATTTCTTCGAAGG 59 8377788 8377859 CATCATTGGCATCATCTCC 58 NA Drosophila melanogaster 50 Mcr FBgn0020240 FBtr0079543 2 1 1 88 2L 8075308 8075326 ATTGAGCGTTGGTATCCAG 59 8075152 8075256 GATTCGTTGAATCGTTCCG 59 NA Drosophila melanogaster 50 CG13792 FBgn0031927 FBtr0079520 2 1 1 60 2L 7645546 7645564 TGTGCAACTACAAGAACTC 57 7645504 7645522 TACTTGAGACACTTGAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ninaC FBgn0002938 FBtr0079437,FBtr0079436 3 2 2 80 2L 7380989 7381068 CAGGATTTGATTATGGATCGC 59 7381110 7381128 AGCCACGGATATTTCAGTG 59 NA Drosophila melanogaster 50 CG13779 FBgn0040954 FBtr0079403 2 1 1 140 2L 7064272 7064290 CGAGGAAGAGCTAAATGTG 57 7064394 7064412 GGTTAGGACTGAACAAAGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Hrb27C FBgn0004838 FBtr0079347,FBtr0079348,FBtr0079346 3 3 3 131 2L 6924283 6924301 TATCATGTACGACCAGGAG 57 6924396 6924698 TTCTTGATTTCGACCTGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG17377 FBgn0031859 FBtr0079376 1 1 3 87 2L 6801842 6802253 TGCTGTAATGAGCTTTATGC 58 6801774 6801792 CATGGATCCTACCTCTACG 58 NA Drosophila melanogaster 50 CG9162 FBgn0031778 FBtr0089943 1 1 1 144 2L 6078979 6078997 AAGCCGTTCTATAGTTGGG 59 6079105 6079123 ATTTGCAATGGACATCGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9154 FBgn0031777 FBtr0079213 2 1 1 80 2L 6070276 6070296 TTTAGTATAGCACTGCTCTCC 59 6070162 6070235 GAACTCGAATATGTGCACTG 59 NA Drosophila melanogaster 50 H15 FBgn0016660 FBtr0079076 2 1 1 96 2L 5414202 5415364 TTTGATAGGGATCCCATGG 58 5415424 5415442 GAGTCAATTGGGACATCAG 57 NA Drosophila melanogaster 50 CG14033 FBgn0046776 FBtr0079065 2 1 1 119 2L 5243822 5243840 CTTCAAAGGACTTGGACAC 58 5243923 5243941 TGTTCAGCTCTGTGTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tkv FBgn0003716 FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086 2 4 4 228 2L 5221390 5221470 TTCTCATGTGCAAGGTAGC 59 5221180 5221198 AAACATAAGCTAGCCACGA 58 NA DesignRelaxed Drosophila melanogaster 50 CG14035 FBgn0031685 FBtr0079020 3 1 1 60 2L 5103479 5103498 ATTTACGATGACGAAGAGGA 58 5103518 5103539 GCGATTGATTCGCTATAATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4230 FBgn0031683 FBtr0079019 2 1 1 275 2L 5097219 5097547 CAAGGATGATGGCTTTGAG 58 5097844 5097862 ATCTCCTCATCCGTAAGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG31919 FBgn0031674 FBtr0079007,FBtr0079006,FBtr0100270,FBtr0079008 3 4 4 116 2L 5047102 5047120 AGATGGATCCACATAGTGC 58 5047198 5047284 CGTTATAGATAGCTGCATTCC 58 NA Nonspecific Drosophila melanogaster 50 Jon25Biii FBgn0031653 FBtr0079056 2 1 1 60 2L 4950669 4950687 AGGTCTTCGTAAAGGACCT 59 4950627 4950645 TATCCGTTGGTGATACGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12194 FBgn0031636 FBtr0077385 1 1 1 80 2L 4840096 4840173 TGATTCTAGGTTGGATGGA 57 4840217 4840235 TTAGTTTGGCCAATTCTCC 57 NA Drosophila melanogaster 50 ine FBgn0011603 FBtr0077448,FBtr0077446,FBtr0077449 1 3 4 141 2L 4473965 4474339 AGTCTCAGGTTATCTTCCAG 58 4473843 4473861 GAAATGATAGGAACTGCCG 58 NA Drosophila melanogaster 50 CG15429 FBgn0031596 FBtr0077428 3 1 1 107 2L 4353566 4353584 GATACAATCACCATGCAGG 58 4353718 4353736 CAGTCAGTCCATTCTCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10019 FBgn0031568 FBtr0077487 3 1 1 90 2L 3749812 3749830 GTTATAGCTGGAGCTCTGC 59 3749883 3750013 CAATTGATAGGAACAGCTGC 59 NA Drosophila melanogaster 50 lectin-24A FBgn0040104 FBtr0077539 3 1 1 60 2L 3717500 3717521 GATCAGATCCAGTTGAATATCC 58 3717461 3717481 CCTTTATGTTGGAAACGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acp24A4 FBgn0051779 FBtr0110767 2 1 1 74 2L 3693614 3693632 TTTATCTACGGCGGATGTC 59 3693558 3693579 CTCCACGCACTTATTTATACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tim FBgn0014396 FBtr0114526,FBtr0077564,FBtr0077567,FBtr0114527,FBtr0077566 2 5 8 80 2L 3500054 3500072 CCAGAATTCCGGACTACTG 59 3499755 3500010 TGAGGTTGAGTTTGTCCAG 59 NA Drosophila melanogaster 50 CG18557 FBgn0031470 FBtr0077689 3 1 1 62 2L 2845572 2845590 AGAATGCTATTTCTTGGCC 57 2845528 2845546 TTTGAGAACTGTGACAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15398 FBgn0031446 FBtr0077741 1 1 1 60 2L 2695825 2695844 TGGCAACATTTATTGTCAGG 58 2695784 2695805 TATATTGGCTAGACCATATCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpp FBgn0000490 FBtr0077774,FBtr0077772,FBtr0077775,FBtr0077771,FBtr0077773 1 5 5 60 2L 2458369 2458387 GACCACTTTAACTCGACCA 59 2458410 2458429 CGGGATTCATATTGTTGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdlc2 FBgn0026141 FBtr0077925,FBtr0077924 2 2 2 61 2L 1344751 1344770 TTCGACAAGAAGTACAACCC 59 1344794 1344812 ACATAGGATCCGAAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lsp1beta FBgn0002563 FBtr0078025 3 1 1 60 2L 899546 899564 CTACGAGTTCAACCAGGAG 59 899587 899606 GTAGAACTTCTTCACGTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ds FBgn0000497 FBtr0078045 1 1 1 89 2L 648358 648493 TTTACAGTATTACGGGCGG 59 648287 648305 GTTCTCTATCCAAGGGTCG 59 NA Drosophila melanogaster 50 CG2813 FBgn0031268 FBtr0078069 3 1 1 81 2L 575075 575149 CAACTACTTTGTCATTAGTGGC 59 575191 575209 AAGTCCTAATAGTGCGGTG 59 NA Drosophila melanogaster 50 lwr FBgn0010602 FBtr0078081,FBtr0078082 2 2 2 159 2L 541831 541849 CTACACCATCTACTGCCAG 59 541690 541709 ATTCCAAACAAACGCTTACC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 MED15 FBgn0027592 FBtr0078062 1 1 1 82 2L 475105 475125 TGGAGACTCTACTTAAGTGTG 58 475169 475241 TGAGGATTTACCAAACTGC 57 NA Drosophila melanogaster 50 U2af38 FBgn0017457 FBtr0078133 1 1 1 60 2L 294053 294074 GTGTACATCAAATTCCGTAACG 59 294014 294032 GGTTGTTCAAATCGTTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3436 FBgn0031229 FBtr0078120,FBtr0078119 2 2 2 68 2L 156467 156485 AGAAGGACATGAGGGAGAG 59 156515 156535 CCAGAAGAAAGCAATAACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11374 FBgn0031214 FBtr0114507 1 1 1 60 2L 76963 76983 AGTATCCTATACGCCTAACAC 58 77004 77023 GGAAGTTTGTTTGAATGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fog FBgn0000719 FBtr0077342,FBtr0100538 2 2 2 170 X 22246596 22246614 TTTATGTGGCCAGACTTGG 59 22230963 22230981 ACCATTCTCTGGACATTCC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 tilB FBgn0014395 FBtr0077345 3 1 1 95 X 21852615 21852633 GACCCTACAATCTGAACCA 58 21852692 21852882 TATCCAGGTGTCTGTACAC 57 NA Drosophila melanogaster 50 CG12565 FBgn0031180 FBtr0077214,FBtr0077215 1 2 2 102 X 21313520 21313538 GATTAGGAACGGGAACTGG 59 21312769 21313456 GAAACGGTAAGATCAATGCAG 59 NA Drosophila melanogaster 50 tty FBgn0015558 FBtr0077225,FBtr0077224 1 2 2 95 X 21207505 21207817 TGAGATCTACCTGGAGAGC 59 21207428 21207447 CGGGTCATGAGATAGAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 shakB FBgn0085387 FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572 1 5 5 80 X 20644230 20644248 CGCTAATATACAGGGTGGT 58 20643790 20644186 GACGCACTAACCTAAATCG 58 NA Drosophila melanogaster 50 run FBgn0003300 FBtr0077279 1 1 1 248 X 20566413 20566840 CCAAGAAGTAAGCAAAGCT 57 20567052 20567070 ATACTCAGATGGCTGAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1695 FBgn0031116 FBtr0077308 1 1 1 91 X 20314198 20314426 CTTCAATGAAATGGCGGAG 59 20314481 20314499 TGTTCTCGATGATGGTCTG 59 NA Nonspecific Drosophila melanogaster 50 CG12231 FBgn0031026 FBtr0074779 2 1 1 62 X 19425589 19425607 GGAGATCAGTACCGAAGAC 58 19425545 19425564 GACAGGTCGTAGATGTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAPp190 FBgn0026375 FBtr0074483,FBtr0074482,FBtr0074481 2 3 3 81 X 17542202 17542220 TCTCAATTACCGAATCGCC 59 17541816 17542158 GTACACGCAAATAAGACCAC 59 NA Drosophila melanogaster 50 spheroide FBgn0030774 FBtr0074363 2 1 1 62 X 16595437 16595720 GATGGAAAGCTAATCGATGC 59 16595394 16595412 AGCATACTGGTTGGTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8931 FBgn0030717 FBtr0074134 2 1 1 82 X 15878561 15878637 CTGCTCAAATGCATAAGTATCG 59 15878680 15878698 CTGGCAATATCACTCTGCA 59 NA Drosophila melanogaster 50 sun FBgn0014391 FBtr0074177 2 1 2 154 X 15743041 15743178 CCGGAATTACCTACATCCA 58 15742367 15742923 CTAAGCCCTTTCATGAGCT 59 NA Drosophila melanogaster 50 Tango13 FBgn0086674 FBtr0113443,FBtr0073803 2 2 2 93 X 13471613 13471632 ATTCAAATTCACCGAACTGC 59 13471688 13474096 GAGGTATTTCTCAACGCGA 59 NA Drosophila melanogaster 50 CG15926 FBgn0062447 FBtr0073649 1 1 1 148 X 12370017 12370191 CAATATGATCAGAGGTGGCA 59 12370370 12370388 TTGCTAGATTCTGCGAGAG 59 NA Drosophila melanogaster 50 CG15731 FBgn0030390 FBtr0073670 2 1 1 91 X 12350799 12350817 CAAGGTGATCCATGAGGAG 59 12350726 12350744 CGTGAATGACCTTGATGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18130 FBgn0030359 FBtr0073581 3 1 1 107 X 11886523 11886541 TTTACTCGGAATGGTGTGG 59 11886375 11886452 TATCCGATTTGCAAATGGC 58 NA Nonspecific Drosophila melanogaster 50 Sk1 FBgn0030300 FBtr0073497,FBtr0073498 1 2 2 60 X 11338242 11338262 ATCCTACTGAATCCGAAATCC 59 11338284 11338302 CCACCTGTTTCTGGAAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15309 FBgn0030183 FBtr0112974,FBtr0071487 2 2 2 60 X 10101546 10101565 CATACTCATGTGTTCACTGC 58 10101505 10101523 GACTTCGATATGAGCTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sp1 FBgn0020378 FBtr0112894,FBtr0071380 2 2 3 96 X 9647339 9647592 TAACATCACAGCTAGTCGC 59 9647652 9647670 GGATGACTGTGATCCAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10962 FBgn0030073 FBtr0071263 3 1 2 74 X 8867826 8867845 TGATCTTTGTGAATAGCACG 58 8867771 8867789 TGTACGCATTTAGGCTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12155 FBgn0029957 FBtr0071071 3 1 1 129 X 7623284 7623302 ATCCTTACGCTGATCAACC 59 7623394 7623700 ACTTGTTTCCTATCTGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34434 FBgn0085463 FBtr0112735 2 1 1 169 X 5509828 5509972 CAAGAACACAAACGTCGAG 59 5509677 5509695 CAACTGCATTCCAATCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3252 FBgn0029762 FBtr0070797 2 1 1 133 X 5301451 5301469 TGTGGACAATCTGCTTACG 59 5301084 5301356 CCTTGATCACTACATTCAGGA 59 NA Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070740 1 1 4 64 X 4959929 4960106 CAAACAATAGTCTCGACGC 58 4960134 4960152 CTCGTCGTACTCAATGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12535 FBgn0029657 FBtr0070534,FBtr0070535 1 2 2 153 X 3287188 3287206 AAGTTTGGTCATGTCCCTG 59 3286920 3287071 GAGATCGTTACGATTCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14780 FBgn0025383 FBtr0070257 1 1 1 204 X 1366694 1366712 CATCATCAATGGAAGCGTG 59 1366939 1366957 CAGAACCACTACGAATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SNF1A FBgn0023169 FBtr0070216,FBtr0070218 2 2 3 80 X 1270212 1270739 TTGTACCAGGTCATATCGAC 58 1270781 1270800 AATATAGTCGAACAGCTCCC 58 NA Drosophila melanogaster 50 DAAM FBgn0025641 FBtr0070241,FBtr0070240,FBtr0070239 1 3 3 81 X 1187405 1187423 TCTCATGCTCGGTATACAG 58 1187282 1187360 AAAGAAGTCCAAATGCCTG 58 NA Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 1 8 8 60 X 551391 551410 CATTATCTCATGGGATGCAG 58 551433 551451 TATCAGCTCAAACAGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL36 FBgn0002579 FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156 3 4 4 114 X 522710 522792 TTGAAGAACATCCAAACCC 57 522614 522632 TATCCTTGGACACCTTCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG41564 FBgn0085695 FBtr0114144 2 1 1 68 U 5735789 5735807 CAATCTGCGAAGTCAAAGC 59 5735839 5735857 CTCTGAGCAAAGTTTCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40092 FBgn0058092 FBtr0113790 1 1 1 74 U 235262 235280 AAATCTGCTCTATCTCGGT 57 235206 235224 AATTTGTTTCGCGGTTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32850 FBgn0052850 FBtr0089123 3 1 1 90 4 337127 340084 GTGTATCATCAGGGAGAGC 59 340135 340156 GTTGACGATTGTTAGAAGATGG 59 NA Drosophila melanogaster 50 CR31339 FBgn0051339 FBtr0083867 2 1 1 61 3R 16020083 16020104 GGTCTTAGGATTATCAATGTGG 58 16020125 16020144 CATATCAATGAGCTTGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34046 FBgn0054046 FBtr0100101 3 1 1 109 3R 27535099 27535189 GCTTATGGAGTTACAAGTCAC 58 27535259 27535278 AGTGCAATTGAAACACTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gprk2 FBgn0004834 FBtr0085788 2 1 1 155 3R 27279103 27279121 ATGCATCAACCTGAAAGAC 58 27279299 27279381 ATCTCGTATTTGACCACCT 57 NA Drosophila melanogaster 50 janA FBgn0001280 FBtr0085595,FBtr0085597,FBtr0085596 3 3 3 86 3R 25864787 25864805 GAAGGTCTACGGATACTCG 58 25864613 25864631 GTGTAGTCCGGGTATTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7601 FBgn0027583 FBtr0085544 3 1 1 81 3R 25561672 25561746 TGACCAAAGCTCTACTTCC 58 25561609 25561627 GCAAACTTTCCCTGAACAG 59 NA Drosophila melanogaster 50 CG7593 FBgn0039687 FBtr0085461 2 1 1 171 3R 25550156 25550231 TGTGTCCTGTATTGTTACGA 58 25550004 25550022 CCAGTTGCTTGAAGAAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1647 FBgn0039602 FBtr0085326 3 1 1 185 3R 24646211 24646229 AGAAGATCTACGAGCTGGT 59 24646431 24646519 GATCAATTAATCTTGCGGGC 59 NA Drosophila melanogaster 50 Or98b FBgn0039582 FBtr0085288 3 1 1 148 3R 24178378 24178396 GGATCAGTTCATCAGTGCT 59 24178508 24178578 TCCCAGGGATATACACTGG 59 NA Drosophila melanogaster 50 scrib FBgn0026178 FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085020,FBtr0100181,FBtr0085019 1 7 7 122 3R 22392941 22393020 ATGAGTTTGAATCCGATCG 57 22393215 22393233 GGACACGCTTATTCTTCAG 58 NA Drosophila melanogaster 50 CG6142 FBgn0039415 FBtr0084987 2 1 1 159 3R 21962101 21962119 CAAGGAGACCTTTGGTCTG 59 21962241 21962314 AATCATTTCGATTCCCTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG4685 FBgn0039349 FBtr0100571,FBtr0084891,FBtr0100570,FBtr0100569 1 4 4 192 3R 21452227 21452245 GATTCCAGCAATGCAAAGG 59 21451877 21452071 GTTTGTGCCACTTCTTGAG 59 NA Nonspecific Drosophila melanogaster 50 CG31436 FBgn0051436 FBtr0084830 3 1 1 94 3R 21130983 21131003 GGATGTTCTAAAGAAGATCGG 58 21131056 21131138 GAAAGAACTCGTAGTACTTGTG 58 NA Drosophila melanogaster 50 CG34150 FBgn0083986 FBtr0111021 2 1 1 60 3R 20640338 20640446 AAAGAGGATGGTACAACGC 59 20640469 20640488 TTTCGATAATTGCGTCAGGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG5715 FBgn0039180 FBtr0084634 2 1 1 62 3R 20119351 20119369 TCAACTTCGAGAAGTCCAG 58 20119307 20119325 TGCCATAGTCGTATTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18428 FBgn0039149 FBtr0084543 2 1 1 61 3R 19935255 19935273 AATACAGCCTGAAAGGGTC 59 19935298 19935383 TCAGTGCTATTGGTATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10300 FBgn0039107 FBtr0084445 3 1 1 155 3R 19538174 19538261 AAACTGCCTTTCAAGTTCG 58 19538380 19538398 ATAATCCTTGCTGTCCAGC 59 NA Nonspecific Drosophila melanogaster 50 CG6738 FBgn0039053 FBtr0084353 3 1 1 91 3R 18925918 18925990 AGCGTATACGATGGATTCTC 59 18926044 18926062 GTTCAACTTAACTCCGGCT 59 NA Drosophila melanogaster 50 CG34375 FBgn0085404 FBtr0112607 3 1 1 95 3R 18832381 18832400 GGCATTAATCAACAATCGCT 59 18828724 18832323 TGGTTTGATGACCTCAAGG 59 NA Nonspecific Drosophila melanogaster 50 Gclm FBgn0046114 FBtr0084336 1 1 1 87 3R 18511805 18511823 ATCGGTGCCAAGATATTCC 59 18511736 18511754 GCGTCACACTAAGTATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34131 FBgn0083967 FBtr0110878 1 1 1 184 3R 18189675 18189693 ATTGAGTCCTGTGATCTGC 59 18189839 18189928 AGGCTCTTAATCTGATAGCTG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG34377 FBgn0085406 FBtr0112610 1 1 1 129 3R 18137790 18137872 ACCATACAGAGACTAAAGACAC 59 18137682 18137700 AGTTATTGAGCGGCATCTC 59 NA Drosophila melanogaster 50 how FBgn0017397 FBtr0084177 3 1 3 119 3R 17897748 17900174 TATGCTGATCATAGCGTAGG 58 17900256 17900274 TATCTCAATGAAACCCGCC 59 NA Drosophila melanogaster 50 CG31178 FBgn0064912 FBtr0084138 1 1 1 60 3R 17699966 17700050 GTGATGCGAATAGCAATGC 59 17700073 17700092 GATTGATAGTGGATAACGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5892 FBgn0038873 FBtr0084052 1 1 1 110 3R 17070123 17070209 AATTACTCTTTGATCAGCGG 57 17070282 17070300 GAACAGGAAACCAACTAGC 58 NA Drosophila melanogaster 50 CG17272 FBgn0038830 FBtr0083992 2 1 1 105 3R 16649666 16649687 GCTCGTTACTTTAAAGAACAGG 59 16649452 16649536 GCATAATAACGGTTAGTTCGTC 59 NA Drosophila melanogaster 50 CG17271 FBgn0038829 FBtr0110823 1 1 2 92 3R 16646431 16646449 ACTTCAAGATGCACGACTC 59 16645202 16646375 CTCCACTATCCTTGACGTG 59 NA Drosophila melanogaster 50 CG5466 FBgn0038815 FBtr0083913 3 1 1 63 3R 16445306 16445324 CTCGTTGGACCAGATTACC 59 16445349 16445602 TATTGAGTCCAGATTGGAACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10887 FBgn0038773 FBtr0083864 2 1 1 125 3R 15940784 15940858 TGCATTCAATAGGAGGAGC 59 15940945 15940965 GGAACACTATTTGCTGTTGAG 59 NA Drosophila melanogaster 50 CG4459 FBgn0038753 FBtr0083849 1 1 1 101 3R 15752697 15752771 CGAAACTGAACGGAATTCAC 59 15752615 15752633 GTACAGGTGGTTAGCACTG 59 NA Drosophila melanogaster 50 CG17836 FBgn0038661 FBtr0083701,FBtr0083700 1 2 5 94 3R 14747034 14750813 CATTGATGAATACCTGCAAGAC 59 14750866 14750886 AGTCAAGAATATCCGTCTCAG 59 NA Drosophila melanogaster 50 CG31235 FBgn0051235 FBtr0083588 2 1 1 96 3R 14143406 14143424 TCATGAAGAATGCCTACGA 58 14143196 14143347 TCGCAATCATTGAAGTACTC 57 NA Drosophila melanogaster 50 CG7175 FBgn0038584 FBtr0083609 2 1 1 75 3R 14047590 14047667 GCTTTATCCCATCAAACGT 58 14047533 14047551 CAACTGCAGATCTTCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG7208 FBgn0038575 FBtr0083618,FBtr0083617 2 2 2 221 3R 14010297 14010380 GAATACGAAGCAACCAAGAG 58 14010095 14010113 TCTTGCGACAATTCTTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17801 FBgn0038550 FBtr0083525 3 1 1 60 3R 13631825 13631844 CACAAGTACAGCTAAGTCGA 59 13631714 13631732 TTGGTACCTCAGATCTCTG 57 NA DesignNoJunction Drosophila melanogaster 50 spn-E FBgn0003483 FBtr0083183 1 1 1 82 3R 11667899 11667917 CAAAGCCTTTAAACGTCGA 58 11667962 11668048 GTTGACGATGCAAGTAATCG 59 NA Drosophila melanogaster 50 CG5623 FBgn0038357 FBtr0083197 2 1 1 70 3R 11592522 11592540 TGATCTTTGGCAAGGAGAC 59 11592470 11592488 GTAGACACCTGTGATGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 poly FBgn0086371 FBtr0082772 3 1 1 60 3R 9188263 9188282 AAATGGCTAACGAATACCGA 59 9188222 9188241 CGCGAATATCCTCTACTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14387 FBgn0038089 FBtr0082683 1 1 1 185 3R 8718064 8718085 GGAATTTGTCAACTACATGACC 59 8718286 8718357 AAATCGACCATGTCCAGTC 59 NA Drosophila melanogaster 50 pps FBgn0082831 FBtr0082586 1 1 1 109 3R 8243599 8243617 TCTTTGCTGAACAACTCCT 59 8243689 8243773 AACACATTAATCCGTTCCAC 58 NA Drosophila melanogaster 50 CG12201 FBgn0037970 FBtr0082486,FBtr0082485 1 2 2 97 3R 7797715 7797733 AATAGGTCCCAATGGAGAG 58 7797865 7797883 CTGAGCCTCTGTACATTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12213 FBgn0037968 FBtr0113223,FBtr0082510 1 2 3 67 3R 7791201 7791277 AGATCAAGATGAGGACGAC 58 7791152 7791170 GTCTAATAACCTCGCCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31116 FBgn0051116 FBtr0082527,FBtr0082528,FBtr0113390,FBtr0082526,FBtr0113391 3 5 5 85 3R 7627002 7627681 AAGTATAGGTTCTGGTATACCC 58 7626938 7626959 CCACTAGTGTCTTAAATGTGAG 58 NA Drosophila melanogaster 50 CG6783 FBgn0037913 FBtr0100321,FBtr0100320 3 2 3 262 3R 7390345 7390363 TACCTACACCCTGACTACC 59 7390033 7390051 GATCAGTCTCTTAGACGGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG33784 FBgn0053784 FBtr0091785 3 1 1 217 3R 5893842 5893918 TACGACTTGCGTACTAACC 59 5894156 5894175 TCATGTCATCATTCAGAACC 57 NA DesignNoJunction Drosophila melanogaster 50 CG12811 FBgn0037779 FBtr0082204 2 1 1 87 3R 5873610 5873628 AGCACCAGCTTCTTTATCC 59 5873470 5873488 GTCTCCGGGTAATACAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11984 FBgn0037655 FBtr0082008,FBtr0082009,FBtr0082007 2 3 3 101 3R 4838553 4838574 GCTGATTTCCTTTCTGATATCC 58 4838074 4838491 TAACTAGCAAGAACAAGCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG15864 FBgn0040528 FBtr0081803 2 1 1 200 3R 4073688 4073708 TGGAGAATAACAATCCTGAGC 59 4074464 4074654 CAATGTGCCTCTTCATTTCC 59 NA Drosophila melanogaster 50 alpha-Est3 FBgn0015571 FBtr0081545 1 1 1 101 3R 3365220 3365299 AAAGCGTACTGTGAGTACG 59 3365137 3365156 ATAGAGGTATGTGGAAGCAC 58 NA Drosophila melanogaster 50 CG1091 FBgn0037470 FBtr0081640,FBtr0081641 1 2 2 82 3R 2909960 2909978 CGACATTTGTCTGAACAGC 59 2909838 2909916 TATATTGAGTCAGTGGCTGTG 59 NA Drosophila melanogaster 50 Dfd FBgn0000439 FBtr0081621 2 1 1 121 3R 2627070 2627354 TGATGAATGAGTGCATTCG 58 2627439 2627457 CTGAGATCCCGGATAAGAG 58 NA Drosophila melanogaster 50 Ccp84Ae FBgn0004779 FBtr0081694 3 1 1 148 3R 2517279 2517415 AGATTGTTATCGCTTTGGC 58 2517149 2517167 GTAGGTGTACTGAGGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED27 FBgn0037359 FBtr0078712 2 1 1 80 3R 1481358 1481376 TCCTACAATTACTGCTCGC 59 1481418 1481498 GAGCTTATCTATGTGGTCTGG 59 NA Drosophila melanogaster 50 tacc FBgn0026620 FBtr0089955,FBtr0089951,FBtr0089953,FBtr0089949,FBtr0089952,FBtr0089954,FBtr0089950 1 7 7 125 3R 563223 563241 ATACAGCCAAGAAATGGGA 58 562961 563040 CCTCCGTATTAGTGTTGGA 58 NA Drosophila melanogaster 50 CG41452 FBgn0084015 FBtr0111175 1 1 1 83 3L 23019737 23019755 GTCCCATCCCATATACTCG 58 23020537 23020555 CAAACGGTGTACACTTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Ssl1 FBgn0037202 FBtr0078554 3 1 1 208 3L 22872834 22872852 CAATTAGGACTCATAGCGC 58 22873075 22873094 CCCATGATAATGACGATCTC 57 NA DesignNoJunction Drosophila melanogaster 50 AP-2 FBgn0023417 FBtr0078419,FBtr0078418 3 2 2 223 3L 21602979 21604253 GACATGTCACCCAATTGTC 58 21604439 21605102 TTTCATGCTCTTTATGAGCG 58 NA DesignRelaxed Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234 3 10 10 74 3L 20826941 20826959 CTCAAATGCGTCAAACTGG 59 20827129 20827147 GTTGCGTTTGAGTATGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 nes FBgn0026630 FBtr0075021,FBtr0075020,FBtr0075019 1 3 3 75 3L 19251447 19251638 AATAACCCGCTTCTACACC 59 19251390 19251408 CAGCTTGTAGATGTCCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4998 FBgn0036612 FBtr0110866,FBtr0075377 1 2 2 138 3L 16337056 16337074 GATGGAGACAGTGAGTTCG 59 16337174 16337259 GAGATTTAATGCAATGGGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13473 FBgn0036442 FBtr0075689 1 1 1 60 3L 14722119 14722138 GTTGGTCCTTAAGATTGACG 58 14722161 14722179 GTTGACTTCGTACTGAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ImpL1 FBgn0001256 FBtr0075843 3 1 2 60 3L 13375934 13375952 AGGTAAGTCTCGCATATCG 58 13375974 13375994 CGCATACCAGTTAATTATGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12520 FBgn0036324 FBtr0113169 3 1 1 68 3L 12895127 12895230 GAAATTCGTGCTAGAGACGA 59 12895078 12895096 CTGCAATTCTTCGAGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pcaf FBgn0020388 FBtr0075969 3 1 1 147 3L 12514969 12515051 GCAGTTCATAGCTGTAATTCG 59 12514842 12514860 CAGACCAGGAATCGATTCC 59 NA Drosophila melanogaster 50 CG10654 FBgn0036294 FBtr0075971 1 1 1 66 3L 12499567 12500328 TGAGGAAGTCTACGTAATAGAG 58 12499522 12499540 AATGGATAGCTTCTCCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7543 FBgn0036164 FBtr0076092 2 1 1 120 3L 11478026 11478044 GTGCAACGCATTAGAAGAG 59 11478128 11478283 GGCAATCCTTTCATCTAGC 58 NA Drosophila melanogaster 50 ATPsyn-b FBgn0019644 FBtr0076405 3 1 2 118 3L 9723624 9723642 GAGATCTACGTCATGGAGC 59 9723724 9723834 TTATCGATCTCGCCATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3306 FBgn0036016 FBtr0076380 3 1 1 60 3L 9595293 9595312 CACAAACAGAAGTTATTGGC 57 9595335 9595353 CATTCTCCTGATTGTTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nwk FBgn0035966 FBtr0076532 2 1 1 98 3L 9132625 9132643 TCAGAATCGCTACTTCACC 59 9132705 9133008 CGTCCCATTAACATCAGGT 59 NA DesignNoJunction Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780 2 8 8 127 3L 7811267 7811287 CAGATGACAAATACAAGGAGG 58 7810754 7811178 GTCGGCATATTGTGTTACC 58 NA Drosophila melanogaster 50 Clk FBgn0023076 FBtr0100132,FBtr0100134,FBtr0076785 1 3 3 89 3L 7760034 7760053 TCTACACTCATTTGAGACGC 59 7759911 7759983 TATCGTTACGAAAGTAGCCC 59 NA Drosophila melanogaster 50 Sh3beta FBgn0035772 FBtr0076872 3 1 2 119 3L 7361074 7361997 ATAAGGAGGTGAAGAAGCG 59 7360973 7360991 TTTGCATCAGCTCCTTCTC 59 NA Nonspecific Drosophila melanogaster 50 Gr64b FBgn0045478 FBtr0073195 3 1 1 84 3L 4029937 4030007 TTGGTCCATAGAGGTTCAG 58 4030055 4030073 GGTGAGGTAGAAGAATCCG 59 NA Drosophila melanogaster 50 CG10866 FBgn0035475 FBtr0073173 1 1 1 60 3L 3937385 3937462 TTATTTGGAGGATGCCACC 59 3937343 3937361 TATAATGCTGGAGCAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32267 FBgn0052267 FBtr0073142 1 1 1 60 3L 3471948 3471966 TTCATCCTATTTGGAGCCG 59 3471836 3471854 AATGCTTCAGGACTATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11537 FBgn0035400 FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117 1 5 5 80 3L 3130292 3130310 GGTCTCGGTCTTTATAGCC 59 3130170 3130248 CCAAACACTTGCATGAAGG 59 NA Drosophila melanogaster 50 prominin-like FBgn0026189 FBtr0073120,FBtr0073119,FBtr0073118 2 3 3 89 3L 3118970 3119051 CCTGCTTCTAGCCATACTG 59 3118899 3118917 TAGGTTACCATACCCAGCA 59 NA Drosophila melanogaster 50 CG32485 FBgn0052485 FBtr0072985 2 1 1 107 3L 3050600 3050618 TGAAATTGATTGTGGAGGC 58 3050689 3051014 TTAGAATGGCCTGAAATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32487 FBgn0052487 FBtr0073007 3 1 1 92 3L 3016506 3016524 AACCCAATCCGTACATGTG 59 3016365 3016450 TATCTGTGCACATGGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 msn FBgn0010909 FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956 1 5 5 102 3L 2556720 2556800 GCAATAGAGATACGTTCCG 57 2556636 2556654 ATACTTTGTCGTTTCGCTC 58 NA Drosophila melanogaster 50 CG17249 FBgn0035249 FBtr0072810 3 1 1 60 3L 1646568 1646589 CCAAACCTATAAGTAAACCCAC 58 1646529 1646549 TCGTCATCATCTTCACTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32319 FBgn0052319 FBtr0072714 1 1 1 60 3L 1471759 1471777 CCGTACTCCATTTACACCT 58 1471717 1471735 CGAAGAAGCATAGATCTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2213 FBgn0035210 FBtr0072724 1 1 1 60 3L 1332405 1332423 CTGGAGATGTTCGTAGAGG 58 1332363 1332381 CCATATTGTAGCTGCTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Roc1b FBgn0040291 FBtr0072547 1 1 1 60 3L 358036 358054 CGAGGAGATAGAGGTTGAG 58 358078 358096 CTCTTCGTCATTGAAGTCC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32344 FBgn0052344 FBtr0072576 3 1 1 102 3L 324119 324137 CATACATACCTGTCCGGAC 59 323981 324054 AAACACCACGTACTCTATGG 59 NA Drosophila melanogaster 50 snoRNA:Or-CD2 FBgn0086603 FBtr0091613 1 1 1 60 2R 4984571 4984590 CATATAAAGGTCAAGCGCTG 59 4984613 4984631 ACAAGACGCTCTATCTCCA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 yip3 FBgn0040063 FBtr0072050,FBtr0072051 1 2 2 62 2R 19132122 19132191 ATAGATGACCGCATTTACTG 57 19132079 19132097 TTCCAGAACTATGTTCCGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG32835 FBgn0052835 FBtr0071992 2 1 1 208 2R 18841030 18841048 GAAATCTTGACGGTAGCGA 59 18839410 18839428 TTAATCAAGAGATGCAGCG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 inaD FBgn0001263 FBtr0071909 2 1 1 90 2R 18745187 18745205 GAAGCATAGTAACTACGCC 57 18745061 18745133 TCGATCGATCTCATAACCC 58 NA Drosophila melanogaster 50 CG17807 FBgn0034748 FBtr0071938 2 1 1 60 2R 18521882 18521901 ATAAGGCAGTGAACAAGGAG 59 18521841 18521859 TCCTGATGTTGCTTCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL29 FBgn0016726 FBtr0071593,FBtr0071594,FBtr0071592 1 3 3 136 2R 17181657 17181744 CACTCTGGGTATGGATGTG 59 17181844 17181862 ACAGAGTAACAGGCTTTGG 59 NA Drosophila melanogaster 50 CG9993 FBgn0034553 FBtr0071560 2 1 1 73 2R 16738698 16738774 AATCCCTCAGCTCTTTACC 58 16738643 16738661 TGAAGATACAGCTGATCCA 57 NA DesignNoJunction Drosophila melanogaster 50 CG10444 FBgn0034494 FBtr0086305 1 1 1 77 2R 16160695 16160772 GGAGACTATGGGTCAATATCC 59 16160638 16160656 GAAATCGTGGAAAGACTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Topors FBgn0034410 FBtr0086570 2 1 1 105 2R 14861660 14861681 CGTTATGTGTACGATAGAAAGC 59 14861746 14861832 TCTGAGCAGGATTGTTTCTG 59 NA Drosophila melanogaster 50 DptB FBgn0034407 FBtr0086621 3 1 1 110 2R 14754947 14754965 TCTATTCATTGGACTGGCT 57 14755039 14755113 AAATTGGGAGCATATGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33998 FBgn0053998 FBtr0100053 1 1 1 60 2R 14626121 14626141 TACACAGGGAAATCATTACGG 59 14626163 14626181 ACAAATTCTCTGGTCACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Menl-1 FBgn0029154 FBtr0100116,FBtr0100115,FBtr0100114 1 3 3 92 2R 12305201 12305279 ATTCTCAGATGGAAAGGCT 58 12305127 12305145 TTGTTAGCTTGACCAGGAG 59 NA Nonspecific Drosophila melanogaster 50 CG10734 FBgn0034082 FBtr0087250 3 1 1 60 2R 12045152 12045171 AAGAAGGAGACATTGGAAGC 59 12045111 12045132 TAGTAGTACTGACTTTCTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10731 FBgn0034081 FBtr0100497 3 1 1 63 2R 12034593 12034675 GCACTTATCCACCTTTCCA 59 12034548 12034566 CTTGTTCTCCTTGGTTTGC 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG8366 FBgn0034054 FBtr0087201 2 1 1 181 2R 11842979 11842997 CAGATGATCATGGACGGTC 59 11843199 11843217 ATTCGAGTAGCAGTTGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Poxn FBgn0003130 FBtr0087311 2 1 1 96 2R 11717713 11717732 TAACTCGCTTCTATGAGACG 58 11715544 11715562 ATGATCTTCTTCACCACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10257 FBgn0033985 FBtr0087408 2 1 1 135 2R 10830582 10830710 CATCAATGGCAAGATGTACC 58 10831314 10831332 GATGTGAAAGGTGTCTTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12862 FBgn0033950 FBtr0087484 1 1 2 60 2R 10527943 10528051 CAACTTAGACCAGATAGCGG 59 10527902 10527920 ATAAATCTCCCGGTACCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SelD FBgn0020615 FBtr0087564,FBtr0087565 1 2 2 60 2R 10157195 10157215 TACCAAGATGACAGAGAAGGA 59 10157155 10157175 CTTAAAGCCTCGCATTATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13353 FBgn0033896 FBtr0087600 3 1 1 161 2R 9978283 9978594 AGGTGTTCATCATAGTGCG 59 9978717 9978737 CGATGGTGATGTAAATGAACC 59 NA Drosophila melanogaster 50 stj FBgn0033870 FBtr0087631 2 1 1 80 2R 9697165 9697427 ACTGATTCAAGCCAATCTG 57 9697471 9697489 TAATTGGCGATCGATTTGG 58 NA Drosophila melanogaster 50 CG13334 FBgn0033856 FBtr0087677 1 1 1 60 2R 9446559 9446578 TTATCATCTCAAATCCCGCC 59 9446600 9446619 GGTAGATTGGTTATTCGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vg FBgn0003975 FBtr0087785 1 1 1 80 2R 8774680 8774700 GGTGCCTACTATCCATATCTG 59 8774742 8778986 CAAATCCTGGTTGAACCTC 58 NA Drosophila melanogaster 50 CG34021 FBgn0054021 FBtr0100076 3 1 1 61 2R 8224849 8224868 AAGCAACTTAAGTGGTTGGA 59 8224892 8224910 CATCCTTCGTCAGGATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8986 FBgn0033658 FBtr0088062 1 1 1 90 2R 7750397 7750415 GATCATCTTCATCAAGGCG 58 7750325 7750343 ATACACAAGGGTCTTGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30035 FBgn0050035 FBtr0088074,FBtr0088073 2 2 2 101 2R 7561243 7561261 ATTGATGGCAATCTCTGCA 59 7561325 7561403 TAGAAGAATCTTTCTGCCCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Or45a FBgn0033404 FBtr0088503 1 1 1 90 2R 5233929 5233947 CAAATGGTGATCATGAGGG 58 5234001 5234073 TTCTGATGACCCAAAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rad201 FBgn0003194 FBtr0088619 3 1 1 112 2R 5054505 5054523 TTACCGGATCAATCAGTGC 59 5054411 5054429 GACTTCATAACCCGTTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18659 FBgn0027561 FBtr0088626 2 1 2 197 2R 5015061 5015079 GATCTACAGATCTTTGCGC 58 5013563 5013695 CTCCTTAACCGATTTGACG 58 NA Drosophila melanogaster 50 CG8709 FBgn0033269 FBtr0113055,FBtr0088815 1 2 2 128 2R 4027872 4028032 TCAACTATCCAGACGTGTG 59 4027762 4027781 TCTGGAAGGTGATCATTGTC 59 NA Drosophila melanogaster 50 Hey FBgn0027788 FBtr0088869 2 1 1 279 2R 3884918 3885349 CTCCAAGGAACAAATCTCG 58 3883916 3883934 GATATGGTAGTCCATGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2906 FBgn0033240 FBtr0113051,FBtr0113052 3 2 2 81 2R 3844274 3844293 ATCTGAAGAACCTGCAAGAG 59 3844336 3844416 CAAGGAAGGGAGTTATCAGG 59 NA Drosophila melanogaster 50 Dgk FBgn0085390 FBtr0112581,FBtr0112579,FBtr0112578,FBtr0112580 1 4 4 90 2R 3724813 3724831 AGAGTAAGAAACTACGCGC 59 3724658 3724759 TCTCCAAAGTCCTGAATGG 58 NA Nonspecific Drosophila melanogaster 50 Gapdh1 FBgn0001091 FBtr0100479,FBtr0088903 3 2 2 62 2R 3679690 3679708 GCTAATCTCGTGGTACGAC 59 3679646 3679665 TACTTGATCAGGTCGATGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18812 FBgn0042135 FBtr0088936,FBtr0088935 1 2 3 185 2R 3607493 3613203 ATCAGGAAAGATACGAGCG 59 3607264 3607285 GCTTAATCAGATATAGCAAGGC 59 NA Drosophila melanogaster 50 CG8335 FBgn0033069 FBtr0085990 2 1 1 86 2R 2088447 2088467 GAGCTAAGGTGTATCTAAAGC 57 2088514 2088589 CCATAACCTGATTGTCACCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30440 FBgn0050440 FBtr0086076 3 1 1 91 2R 1362228 1362246 CTGTTCAGGATCAACACGA 59 1355934 1362174 CTTCTGCATTAGTATCGGGT 59 NA Drosophila melanogaster 50 CG17486 FBgn0032997 FBtr0111293 2 1 1 60 2R 506829 506849 TATATGTCTGACACGACTTGG 59 506871 506889 TCTGTTCTTTACAACGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41449 FBgn0084013 FBtr0111267 2 1 1 64 2R 119323 119341 CGCTAAAGAAGGGAGACAG 59 119277 119295 ATTCTCGCAACTGATTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40465 FBgn0058465 FBtr0100850 2 1 1 60 2L 20253962 20253982 ATATAGAATGGGTCCAGTCTG 58 20253922 20253941 TACCACAGGTACTCTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9331 FBgn0032889 FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081418,FBtr0081419 3 5 5 242 2L 20826856 20826874 AGTGACTTCGTAGTGATCG 58 20827141 20827498 AACAACATTGTCAAGCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18858 FBgn0042175 FBtr0081364 2 1 1 60 2L 20457492 20457510 AACTGCACTGTCTCTATGG 58 20457385 20457470 GATTTCTTGTACTGCAGTCTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG10262 FBgn0032813 FBtr0081262 3 1 1 86 2L 19583489 19583507 CGGAGAAGATTACGCTCAG 59 19583421 19583439 GATCCTGGTCCAGATTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10750 FBgn0032769 FBtr0081196 2 1 1 87 2L 19301274 19301292 TCTACAACCTGGACAAGGA 59 19301343 19301415 TAGCTGGGAACAATGTCTC 58 NA Drosophila melanogaster 50 tup FBgn0003896 FBtr0081111,FBtr0081112 1 2 2 103 2L 18862252 18862270 GTATTAGGGACAAGCGACC 59 18862106 18862185 ATTGTAGCAGGTTCTGAGC 59 NA Drosophila melanogaster 50 CG6860 FBgn0032633 FBtr0080969,FBtr0080968 2 2 2 83 2L 17372762 17372782 GTTATACTGTGTCATTTGGCC 59 17372634 17372717 CAACTTATTGACACCGGGA 59 NA Drosophila melanogaster 50 CG12448 FBgn0028857 FBtr0080796,FBtr0080795 1 2 2 60 2L 15942019 15942038 AAGGAACATATGCTACCAGG 59 15942059 15942141 CGATCTTACTTAGCAGATCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15639 FBgn0032502 FBtr0080477 1 1 1 213 2L 13305818 13306074 GAAATCCATAAGATCGATGCG 59 13305560 13305579 CCATCATGGGATAGATAGCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG17010 FBgn0032424 FBtr0080355,FBtr0080354 1 2 2 60 2L 12357605 12357624 CTTCAATGGTAGTCCCTACG 59 12357647 12357665 GGTTCTTCCACAACTTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14945 FBgn0032402 FBtr0080295,FBtr0080294 3 2 2 186 2L 12051366 12051455 ATGACTTCGATGTGTCTCG 59 12051605 12051623 TCCGCCGATACTATATTCG 58 NA DesignNoJunction Drosophila melanogaster 50 esc FBgn0000588 FBtr0080325 2 1 1 197 2L 11828900 11828980 TACAAATACGACACCCACG 59 11828357 11828740 AAATACTTCATCGGGATCCG 59 NA Drosophila melanogaster 50 Mst33A FBgn0028412 FBtr0080271,FBtr0080272 3 2 2 60 2L 11586124 11586144 GATCAAGTGCATAATCGTGAC 59 11586084 11586102 TTGGATATACCGGATGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18666 FBgn0040967 FBtr0080160 3 1 1 60 2L 11034892 11034910 ATGATGATTCCAGTGACGA 58 11034933 11034952 GGATCGGAATACTGATCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17140 FBgn0032306 FBtr0100838,FBtr0100837 2 2 2 60 2L 10843766 10843784 GTCGATTGTATGGACTGCT 59 10843656 10843742 GTTTGAAAGCTCACTTCGT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5355 FBgn0032242 FBtr0080047 1 1 1 84 2L 10412253 10412271 AGGTGCGGAAATAACTTCC 59 10412125 10412208 GCCTTCATTGGTAATGTAATCG 59 NA Drosophila melanogaster 50 CG32987 FBgn0052987 FBtr0079735 1 1 1 60 2L 8864068 8864087 ATATGCATGCATTGTATCCC 58 8864109 8864128 CTGTCATGAACCACTTACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LanB1 FBgn0002527 FBtr0079491,FBtr0079490 2 2 2 244 2L 7817646 7817740 TAGATTGTCAGGACTCGAC 58 7817948 7817966 ATTGCCAAAGAAGTTGTCC 58 NA DesignRelaxed Drosophila melanogaster 50 milt FBgn0022201 FBtr0079397,FBtr0079399,FBtr0079398 2 3 3 180 2L 7051637 7051769 CAGATACTGACACTCCCAC 59 7051911 7051931 TTTAGCTGAGCACTGATATCG 59 NA Drosophila melanogaster 50 Coprox FBgn0021944 FBtr0079352 2 1 1 130 2L 6965536 6965555 ACCAAGTTCGGTCTATACAC 59 6965648 6965666 AGGACCTTCATCAGTTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 H15 FBgn0016660 FBtr0079076 3 1 1 99 2L 5414199 5415361 GACTTTGATAGGGATCCCA 58 5415424 5415442 GAGTCAATTGGGACATCAG 57 NA Drosophila melanogaster 50 CG14035 FBgn0031685 FBtr0079020 2 1 1 60 2L 5103477 5103497 TGATTTACGATGACGAAGAGG 59 5103516 5103537 GATTGATTCGCTATAATCTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31918 FBgn0031678 FBtr0079028 3 1 1 60 2L 5057722 5057740 AAGTTTCAGTGGATGGAGG 59 5057680 5057698 ACATGATGTCATTGAAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15625 FBgn0031644 FBtr0077390 2 1 1 99 2L 4890351 4890433 GATATCCACAGTACATGAACAC 58 4890493 4890511 TTCTTGATGTTCATCGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15630 FBgn0031627 FBtr0077418 3 1 1 62 2L 4735767 4735866 ATTATGCTTTCGAGGAGGG 59 4735723 4735741 GGTAAACGGTATCTGGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31694 FBgn0051694 FBtr0077685 1 1 1 97 2L 2871046 2871065 CTAACACTTATACCTTCGGG 57 2870897 2870915 GTAGATTGCAAGAGACCCA 58 NA DesignNoJunction Drosophila melanogaster 50 eys FBgn0031414 FBtr0114370 1 1 1 81 2L 2353453 2353547 CAACCTTTACTTGCATCTGC 59 2353591 2353609 TTGTTGAAGGAGTCACAGG 59 NA Drosophila melanogaster 50 CG34172 FBgn0085201 FBtr0112363 3 1 1 125 2L 2192831 2192977 GAGCAGTTACATAAGAGACCT 58 2192664 2192682 AAATCTTATCCGCAGGTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Su(dx) FBgn0003557 FBtr0077824,FBtr0077823,FBtr0077822 2 3 3 82 2L 2040347 2040428 GTTCACAGTGCTGATTACAC 59 2040473 2040491 CAAGCATGGCATCTTTACG 59 NA Drosophila melanogaster 50 Tango14 FBgn0031312 FBtr0077961 1 1 1 107 2L 1159432 1159450 GGTTATGTGAACGGTTCAC 58 1159809 1159827 ACTGTCTTCGTACAACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33127 FBgn0053127 FBtr0078052 1 1 1 64 2L 322202 322221 CCTGACATTGAGGGATACAG 59 322246 322266 CGTAGCCATCTATAATCAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11455 FBgn0031228 FBtr0078118,FBtr0078117 3 2 2 113 2L 155730 155748 GATCTCCGACTTTCAGGAG 59 155898 155916 AATTCTTGTCCCTTACGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 roX2 FBgn0019660 FBtr0073514,FBtr0073515 1 2 2 62 X 11473812 11473830 AAGAGTAACGATTTCCGCA 59 11473856 11473874 ATCTCACTGTCCGTAAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HERC2 FBgn0031107 FBtr0077299 3 1 1 62 X 20271286 20271305 GAAGTCGTTGCATCATTCTG 59 20271330 20271418 CCGACTCACAGTTGTATCC 59 NA DesignRelaxed Drosophila melanogaster 50 Cdc42 FBgn0010341 FBtr0074751,FBtr0074752 3 2 2 64 X 19592046 19592065 TGCTCATCTCGTATACAACC 59 19592092 19592110 ATAGTTGTCGAACACCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TH1 FBgn0010416 FBtr0074305 1 1 1 138 X 16284087 16284105 GCATGCTAAACAAGGAGGA 59 16283899 16283986 ACCACAGGATATTTGATGCA 59 NA Drosophila melanogaster 50 CG9911 FBgn0030734 FBtr0074241,FBtr0074242 3 2 4 146 X 16190154 16190350 TAGTTGCGATTCTACAGCT 58 16189294 16189312 TACTAAACCGACACCACTC 58 NA Drosophila melanogaster 50 fs(1)h FBgn0004656 FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119 2 5 5 117 X 7944306 7944477 CAAGAAAGATGAGTCCGCT 59 7944207 7944225 ACTCGAACTGCTATCACTC 58 NA Drosophila melanogaster 50 Spx FBgn0015818 FBtr0070894 3 1 1 99 X 6149975 6150067 AAGATGCCACCATCTATGC 59 6150130 6150206 ATGTGTACGTTCACCACTG 59 NA Drosophila melanogaster 50 CG4096 FBgn0029791 FBtr0070805 1 1 1 147 X 5601210 5601228 GAAGCGGTACAAGATTTGC 59 5601336 5601419 CTTGCAGGGATTATTCTTATCG 58 NA Drosophila melanogaster 50 elav FBgn0000570 FBtr0114366,FBtr0070091,FBtr0100254 3 3 3 61 X 412376 412394 ATTCGATTCGATAAGCGGG 59 412333 412351 GGTGTAGTACCGTTCAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cin FBgn0000316 FBtr0070064,FBtr0070065 3 2 2 82 X 150606 150624 TATGCCATGAAGTCCACTG 59 150667 150808 GGCAAAGAATTAGGTGAATCTC 59 NA Drosophila melanogaster 50 CG40188 FBgn0058188 FBtr0113821 2 1 2 60 U 2235946 2235966 GTTTAATCGGGAAGATGAACG 59 2235987 2236006 TTACGCAAGAGTACATATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Caps FBgn0053653 FBtr0091630,FBtr0091631 3 2 3 105 4 1259628 1259646 GCTGTTGACATGGATAGAG 57 1259714 1265686 GCAAATTGTCATCAGTTCTC 57 NA Drosophila melanogaster 50 Syt7 FBgn0039900 FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475 3 5 6 156 4 323148 325657 GTAGTTATAGTCTTCGGGCTG 59 323012 323033 CCAATCAAAGGAGTTCTAAGAC 58 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 3 14 14 110 3R 27690344 27690864 TAAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 Gprk2 FBgn0004834 FBtr0085788 3 1 1 156 3R 27279102 27279121 AATGCATCAACCTGAAAGAC 58 27279299 27279381 ATCTCGTATTTGACCACCT 57 NA Drosophila melanogaster 50 CG31033 FBgn0039705 FBtr0085530,FBtr0085529,FBtr0085528 2 3 3 90 3R 25653856 25653876 GCAATTACCTCATATGCTCTG 58 25653707 25653804 TGTTCGTTTGTAAACGTGG 58 NA Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 3 7 8 82 3R 24639656 24639675 TTACTGCTACGGATATTGGC 59 24639719 24640879 GCTCAAACACCTTATAGCAG 58 NA Drosophila melanogaster 50 CG34437 FBgn0085466 FBtr0112738 2 1 1 70 3R 24109731 24109750 ATAACAACTGCTAGTTGCGT 59 24109842 24109862 GGTATATTGTCAAACCTTCCC 58 NA DesignNoJunction Drosophila melanogaster 50 pll FBgn0010441 FBtr0085179 2 1 1 133 3R 23077736 23077754 GTCTACCAGCTGATGAAGG 59 23077558 23077640 AGAAAGTAGATGCCTCTAGC 58 NA Drosophila melanogaster 50 CG31120 FBgn0051120 FBtr0089439 2 1 2 61 3R 20742210 20742228 TTCGGATACCTTGAAGTGG 58 20742167 20742185 CCAGCACTTCATAGTTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myo95E FBgn0039157 FBtr0100517,FBtr0084579,FBtr0084578,FBtr0100518,FBtr0100519,FBtr0100516,FBtr0100520 2 7 7 97 3R 19985254 19985382 CTCTAGTCGATATGGAAAGCT 58 19985028 19985046 GATAGGGTCCGTTATACGG 58 NA Drosophila melanogaster 50 CG31140 FBgn0051140 FBtr0113393,FBtr0084497,FBtr0113392,FBtr0084498,FBtr0084499 3 5 5 81 3R 19792355 19792373 AAGCCAACATACTGTCACC 59 19792417 19798181 TAAAGTTGCAAACTTCGCAG 59 NA Drosophila melanogaster 50 Aats-glupro FBgn0005674 FBtr0084511 1 1 2 98 3R 19782482 19782558 ACCAAATACAAGGTGTACCC 59 19782403 19782421 GTCATGGTACTCAGTGGTG 59 NA Drosophila melanogaster 50 CG4424 FBgn0038765 FBtr0083841 2 1 1 87 3R 15852660 15852791 CCTAGTTAAGCATGAAAGAACC 59 15852594 15852612 AAGGACACTGGCATATGTG 59 NA Drosophila melanogaster 50 Cpr92A FBgn0038714 FBtr0083811 3 1 1 76 3R 15423766 15423784 CCAGTACCAGCTCATTACG 59 15423708 15423726 GGATACGAAAGCAGAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8795 FBgn0038139 FBtr0100149,FBtr0082774,FBtr0082773 3 3 3 132 3R 9157366 9157631 TTGTTATGCTCAGGAATGC 58 9157252 9157270 TAATGGTTAGAACTGTCGC 57 NA Drosophila melanogaster 50 Vha55 FBgn0005671 FBtr0082670,FBtr0082671 1 2 2 171 3R 8450715 8450734 TGTATCTGGAGTTCTTGACC 58 8450502 8450520 TCCCTAGGGTAGAATTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34360 FBgn0085389 FBtr0114581,FBtr0112576,FBtr0114582 3 3 5 262 3R 5701913 5701934 GTGATTGTCAAGATCACAACAG 59 5769232 5769250 AGATAGTTGCCGTAGTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG16908 FBgn0037741 FBtr0082166 3 1 1 103 3R 5577208 5577284 AGCCTTAGTGATGTGATACC 58 5577124 5577142 TGCAGTTTGTACTCCTGAG 59 NA Drosophila melanogaster 50 Alh FBgn0037471 FBtr0113199 3 1 6 87 3R 2922537 2922621 ATTTGGGAATGAGACACGT 59 2922468 2922486 CTACTGGCAGTTAAGCTCC 59 NA Nonspecific Drosophila melanogaster 50 CG14612 FBgn0040670 FBtr0081562 2 1 1 79 3R 2919899 2919918 GTTACGCAGTCAAGATAAGG 58 2920022 2920040 TAATGTCCTTGTGCCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab23 FBgn0037364 FBtr0078727 2 1 1 137 3R 1508446 1508464 GATGCGTCTAATCCAAACG 58 1507623 1508346 CCATTTCCAACAATGACCAC 59 NA InUTR Drosophila melanogaster 50 CG32945 FBgn0052945 FBtr0078896 1 1 1 60 3R 404241 404259 TGAGATTACTCGGGATGTG 58 404199 404218 GAGTTCAGTACTTATGACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41454 FBgn0084017 FBtr0111173 1 1 1 144 3L 23131362 23132879 ACATTCGTTGACTTTCCTC 57 23132987 23133005 AACAGCGACGGATATAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11241 FBgn0037186 FBtr0078536 2 1 2 111 3L 22727830 22728020 CTTCATGGAAACGTTCTGC 59 22727737 22727756 TATTCTCGGGTAGAGTCTCC 59 NA Drosophila melanogaster 50 CG7145 FBgn0037138 FBtr0078446,FBtr0078447,FBtr0078445 3 3 3 83 3L 21830928 21830946 TTGAGACCATGAAACTGGT 58 21830810 21830881 ACTTGACGAAATCCTCGTC 59 NA Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0078260 1 1 10 165 3L 20822631 20825954 AATGCCTAAGGAACAAGTC 57 20826083 20826101 CTTAACATAGTTGGTGGCA 57 NA InUTR Drosophila melanogaster 50 CG5047 FBgn0037008 FBtr0078215 2 1 1 60 3L 20513565 20513583 TGTGAACAACTCGAGTACC 59 20513523 20513542 AATACTGTGCAGATCCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5059 FBgn0037007 FBtr0078218,FBtr0078216,FBtr0078217,FBtr0078219 1 4 4 116 3L 20508982 20509000 TGATGAGCTCAGAAACGTG 59 20508709 20508828 TCAATGTTCCAGCTACTGG 59 NA Drosophila melanogaster 50 Smn FBgn0036641 FBtr0075395 1 1 1 65 3L 16573667 16573685 ATGTCCGGCTATTATACGG 58 16573620 16573638 TTTCTTTCCGCTAGTGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9238 FBgn0036428 FBtr0075724 2 1 2 81 3L 14543149 14543167 TATTCAGTCACAGTCCACC 58 14540571 14543105 TCGTCATTGTAGTTCAACGA 59 NA Drosophila melanogaster 50 CG17826 FBgn0036227 FBtr0076042 2 1 1 60 3L 11943290 11943309 TTACACCGAATCCAGATGAC 59 11943332 11943350 ATCACTATGATTCCGTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32043 FBgn0052043 FBtr0114368 2 1 4 95 3L 9463530 9463670 ACGGAAATCTACACGAAGG 59 9463728 9463747 TAGATTCCACTTACCAGCTG 58 NA Drosophila melanogaster 50 CG8628 FBgn0035744 FBtr0076914 2 1 1 99 3L 7124092 7124110 TACTAGCAACATGGTGTCG 59 7124305 7124324 GAAGAGACCGTAGAATTCCA 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133 1 5 11 192 3L 3578467 3593333 TTGCAGATATGGAGACTGG 58 3593488 3593507 CTGTTTGTTCAGAAAGACCT 57 NA Drosophila melanogaster 50 RpL28 FBgn0035422 FBtr0073097,FBtr0073095,FBtr0073096,FBtr0073098 1 4 4 87 3L 3221935 3221954 CAATTGGTTGATCATTCGCA 59 3221695 3221885 CAAGTTGTTTGGCTCTGTG 59 NA Nonspecific Drosophila melanogaster 50 RabX5 FBgn0035255 FBtr0072804 1 1 1 71 3L 1669611 1669688 TACAGTCTGGAAATGTGGG 58 1669558 1669576 ATTGCGATAATAGGCTCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG30217 FBgn0050217 FBtr0071925,FBtr0071926 2 2 2 60 2R 18543254 18543342 GTCCACTTTATCCTGTTGCT 59 18543213 18543231 TTGCAGACAGGAATAGACG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 NiPp1 FBgn0026402 FBtr0087058 3 1 1 91 2R 12892052 12892070 GCAACATCATGGAAGACCT 59 12891918 12891998 TGTGAGATTATCAAGCTCCG 59 NA Drosophila melanogaster 50 CG6704 FBgn0033887 FBtr0087609 3 1 1 102 2R 9858183 9858256 CCATTCTTTGAATTTCCGC 57 9858099 9858120 CTATCTTCTCAATGAACTCCAG 57 NA Drosophila melanogaster 50 EfTuM FBgn0024556 FBtr0087670 1 1 1 62 2R 9396194 9396212 TTCGTGGGCTATAACAAGG 59 9396238 9396256 AATCTGGTGGAACATCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tou FBgn0033636 FBtr0113066,FBtr0088091 3 2 5 80 2R 7477435 7477515 ATGATGGGTACTGGAAGTG 58 7477373 7477393 GGACGTGTACTTGATTATCTC 57 NA Drosophila melanogaster 50 CAP FBgn0033504 FBtr0088342,FBtr0088343 1 2 10 128 2R 6180357 6180375 GTGTCTCCGACAAGATCAG 59 6180932 6181135 CTTTGTAGATGACTTCATTGGG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111072,FBtr0111058 2 2 60 84 2R 3246840 3249231 TCATCACAGAACCAATTGGT 59 3246775 3246793 CTCAGCAATCTCTTGACCT 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111088 1 1 60 112 2R 3236476 3242809 GTTCCTGCATTCAGATGGT 59 3236382 3236403 ACTGCGTCCTTAATAATGAGAG 59 NA Drosophila melanogaster 50 gp210 FBgn0033039 FBtr0086044 2 1 1 80 2R 1652646 1653006 AACTGCAGGAATAGAGTATCAG 59 1653047 1653065 GTGATTGTTGCCTTTCCAG 59 NA Drosophila melanogaster 50 CG9270 FBgn0032908 FBtr0081436,FBtr0081435 2 2 2 91 2L 20930076 20930152 CTTAGAAGAGGTGCACCTC 59 20930003 20930022 CTACACTGTAGTTGGATCCG 59 NA Drosophila melanogaster 50 CG9331 FBgn0032889 FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081419 1 4 5 134 2L 20825962 20825980 AAAGAGACGTAAGATCCCG 58 20826078 20826641 CACTTGTCATTGTCGATGG 58 NA Drosophila melanogaster 50 CG17549 FBgn0032774 FBtr0081221,FBtr0081220,FBtr0081219 1 3 3 118 2L 19388088 19388108 CATCGATCCGTATCTATTCCA 58 19387720 19387738 CTAGATTGTCGTGGTAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17568 FBgn0032763 FBtr0081233 2 1 1 110 2L 19179979 19180055 GAACTTCGCGTTATGACTC 58 19179887 19179905 ACATTCCTATCTGATGCCA 58 NA InUTR Drosophila melanogaster 50 Nak FBgn0015772 FBtr0081189,FBtr0081187 1 2 3 96 2L 18965179 18965272 ATGATGAATGCGAGATTGC 58 18965101 18965120 GACAATAGTGCAATCGAGAG 58 NA Drosophila melanogaster 50 CG13284 FBgn0032614 FBtr0080927,FBtr0080926 1 2 2 142 2L 16843628 16843646 AAATGAATGCCTACACCGA 59 16843386 16843522 AATGGCATACTGAATGCCA 59 NA Drosophila melanogaster 50 CG15279 FBgn0028886 FBtr0080686,FBtr0080685 1 2 3 160 2L 14847047 14848681 GATGAAAGGTGTTGGAGCT 59 14846905 14846924 AGTTAATGCAGTGGATACCC 59 NA Drosophila melanogaster 50 Oatp30B FBgn0032123 FBtr0079827,FBtr0079828,FBtr0079826,FBtr0079825 1 4 4 81 2L 9537728 9537811 GCATATGGATTATTGCTACGAC 59 9537853 9537871 CTTAGACTTGGTCTGTGGC 59 NA Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567 1 8 9 163 2L 8089727 8105702 CAATCACTTGATAAGCTGGTG 59 8106857 8106875 GAAGGTACATCCGTCACAG 59 NA Drosophila melanogaster 50 Gr28b FBgn0045495 FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458 3 5 5 118 2L 7455130 7455212 TTGTATTTCACGATCAGCG 58 7455030 7455049 TTATTGAAGGTCTCACAGCA 58 NA Drosophila melanogaster 50 chic FBgn0000308 FBtr0079233,FBtr0079235,FBtr0079236,FBtr0079234 3 4 4 117 2L 5976614 5976632 CACTGCATGAAGACAACAC 59 5973579 5973597 AGTACCCGCAAGTAATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CoRest FBgn0053525 FBtr0091483,FBtr0091484 3 2 5 97 X 19422848 19422936 AACTTTCCTACGATTGCCA 59 19422997 19423015 ATCTGGTCGAGATTGTAGC 58 NA Drosophila melanogaster 50 CG32495 FBgn0052495 FBtr0089800 3 1 3 168 X 17797999 17798017 TTGCGATCCGACTATATGG 59 17798677 17798840 TATCCGGCATATTGTGCAG 59 NA Drosophila melanogaster 50 CG8119 FBgn0030664 FBtr0074051 2 1 1 61 X 15556958 15556977 GCAAGCTAATTCTACATCCG 58 15557001 15557019 TTTGAATGCCGAATAGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32588 FBgn0052588 FBtr0074025 3 1 1 81 X 15100115 15100214 CTCCATTGTATTTATCACTCCG 58 15100055 15100073 GACATACACATCGATGGTC 57 NA Drosophila melanogaster 50 CG14423 FBgn0029646 FBtr0070556 3 1 1 60 X 2839752 2839772 AGTTCCTAACCTTCAAGAACC 59 2839793 2839812 ATAATGATCGGAATCACGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF2B-beta FBgn0024996 FBtr0070479 1 1 1 71 X 2599945 2600031 TTCATATCCAACACCGGTG 59 2600066 2600084 TTCGGGATGATACAGTTCC 58 NA DesignRelaxed Drosophila melanogaster 50 cul-5 FBgn0039632 FBtr0085417 3 1 1 154 3R 24886673 24886751 AAGACATAAAGGTCAGCGA 58 24886537 24886555 AATATAGTCCTCGAGCTCG 58 NA Drosophila melanogaster 50 CG6503 FBgn0040606 FBtr0085025 1 1 1 82 3R 22250615 22250633 ATAGTGCCGAGAACAATCG 59 22250551 22250569 GATGTTCAGGCTGTAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5778 FBgn0038930 FBtr0113265 3 1 2 115 3R 17911578 17911963 GCTACGACTGTAATCCACC 59 17911481 17911499 GTTGTAGTATCCTCCACCG 59 NA Drosophila melanogaster 50 CG3983 FBgn0038473 FBtr0083426,FBtr0083425 2 2 2 80 3R 12897404 12897424 AAGAGCTCCATCATAAACTCG 59 12897282 12897363 TTGCATTGATTTGGTCACTC 59 NA Drosophila melanogaster 50 CG17556 FBgn0038462 FBtr0083375 2 1 1 61 3R 12820778 12820861 GAAATACGATACACAATGGGTG 59 12820738 12820756 TGCGAATAGTAAGTGCGAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG9722 FBgn0038209 FBtr0082906 3 1 1 60 3R 9979436 9979457 GTACATCAGTATGGAAATCGGA 59 9979397 9979415 CTGTATATCTTCCCAGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yellow-f FBgn0041710 FBtr0082723 3 1 1 71 3R 8818232 8818250 GAACCTCAGTGGATGTCTG 59 8818113 8818197 GGCGATTATTGGGAAACTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG18554 FBgn0038060 FBtr0082676 2 1 1 63 3R 8343797 8343815 TCAATCCGCAGATATGGAC 59 8343752 8343770 GAATGCTCCTTATCGAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4860 FBgn0037999 FBtr0082623 2 1 1 119 3R 8046705 8046853 GTTCGAGAGGAGTATGGTG 59 8046604 8046622 CAGGTACAGGTTATTCACG 57 NA DesignNoJunction Drosophila melanogaster 50 CG14681 FBgn0037820 FBtr0100117 3 1 2 300 3R 6515459 6515477 AACTTTAGCTACGACGGAG 59 6516219 6516237 CGTTCTTCTTTACCTGAGG 57 NA DesignNoJunction Drosophila melanogaster 50 Taf7 FBgn0024909 FBtr0114520,FBtr0081756 3 2 2 60 3R 3733714 3733734 CAGATACTGTACACGAAACTC 58 3733756 3733774 CAATGGTCTTGTAGCTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14656 FBgn0037278 FBtr0078878 2 1 1 144 3R 623417 625429 ATTGGTGAACTTGGTGGAG 59 623291 623309 GTTGTTGATAACCGGACGA 59 NA DesignNoJunction Drosophila melanogaster 50 HLH106 FBgn0015234 FBtr0074873,FBtr0074875,FBtr0074874 3 3 3 104 3L 19790267 19790285 TCTTCACGTACGATCTGAG 58 19790350 19790440 GCTCTCGATATTGCTTAATGAC 59 NA Drosophila melanogaster 50 CG9392 FBgn0036895 FBtr0074948 1 1 1 176 3L 19613792 19613872 CGTATCTCAGCTATTCGGA 58 19614012 19614030 TTACAGTGGCATTTGAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fry FBgn0016081 FBtr0076417,FBtr0110843 3 2 2 80 3L 9625378 9625397 GAAGTGGGATGAAATTTCCG 59 9625255 9625338 GATACTATAAAGGCTTCTGTGC 58 NA Drosophila melanogaster 50 jbug FBgn0028371 FBtr0071918,FBtr0071917 3 2 3 86 2R 18618377 18618395 TTATTCTCCCAATAGCGCC 59 18618238 18618330 TCGTAACCATTCTTACTAACGG 59 NA Drosophila melanogaster 50 CG18537 FBgn0034323 FBtr0086759 1 1 1 60 2R 14183673 14183692 AAAGTTTGGAATATCAGCGC 59 14183715 14183796 CACCATTGTCTCCTCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 lolal FBgn0022238 FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778 1 4 4 80 2R 14042986 14043404 TCACAGATGTAACACTCGC 59 14042924 14042942 TAAAGTAGGGACTGCAAGC 59 NA Drosophila melanogaster 50 CG14482 FBgn0034245 FBtr0086905 1 1 1 67 2R 13460016 13460162 TTCCTTCATCCGATCTGGA 59 13459967 13459985 AGTCGGTGTAGTAAAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Got1 FBgn0001124 FBtr0087231,FBtr0087232 2 2 2 122 2R 12027835 12027853 CTTACAGGACAGATGCTGG 59 12027938 12028019 TGAATGTTTCGAGTCCAGTC 59 NA Drosophila melanogaster 50 nec FBgn0002930 FBtr0089052 2 1 1 107 2R 3044374 3044392 ACCAAGTTGATGGATCAGC 59 3044219 3044303 GAACTTGGCATAGGAAGCT 59 NA Drosophila melanogaster 50 mle FBgn0002774 FBtr0086031,FBtr0100576,FBtr0086030 3 3 3 88 2R 1866882 1866900 TTAAGGGTTTGGACCTTCC 59 1866171 1866832 GCTTAAGTTCACAATGAGAGG 58 NA Drosophila melanogaster 50 CG31624 FBgn0051624 FBtr0081491 2 1 1 81 2L 21199529 21199548 GAAGCCTATAACGGACTCAG 59 21199467 21199485 ATTCTCGCATTTGTTGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9331 FBgn0032889 FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081419 1 4 5 134 2L 20825962 20825980 AAAGAGACGTAAGATCCCG 58 20826078 20826641 CACTTGTCATTGTCGATGG 58 NA Drosophila melanogaster 50 CG13136 FBgn0032186 FBtr0079965 1 1 1 63 2L 10136735 10136756 CGTCTATGGATTCAACATTACC 58 10136693 10136711 CGTATTGCACTGTGTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2862 FBgn0031459 FBtr0077718 2 1 2 67 2L 2770391 2770468 GGATGATAAATGCGTTGCC 59 2770499 2770517 GAGGAATCACGAGGAAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3528 FBgn0031430 FBtr0077781 2 1 1 64 2L 2517592 2517663 AAAGCAAATTTCGACCGTC 59 2517546 2517564 AGCTGGAGATCTCTAGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089429,FBtr0089431,FBtr0089430,FBtr0089436,FBtr0089435,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437,FBtr0089428 1 10 10 114 2L 113362 113445 ATTGTCAAGGACCTAAACCT 58 113522 113540 AGTTGTCAATCTCCAGAGG 58 NA Drosophila melanogaster 50 tRNA:R:85Ca FBgn0011966 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-289 FBgn0067703 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi18S-1854b FBgn0083041 FBtr0113569 1 1 1 62 X 17039686 17039704 TGATCCTTACAGGGTTGTG 58 17039642 17039661 GAGGAATAGCTAATCATGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32819 FBgn0052819 FBtr0070050 1 1 2 252 X 21490588 21490729 GAACATGAATCGCAACCTC 59 21490354 21490372 GATGTGCAGTGGTATCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077207,FBtr0077204,FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077206,FBtr0077210 1 8 8 102 X 21253981 21254060 AACACGATTGTAAAGGCTG 58 21254126 21254144 TCATTTCCAGGGTGATACG 59 NA Drosophila melanogaster 50 CG34120 FBgn0083956 FBtr0110827 3 1 2 81 X 21004908 21004926 CATCAAGCCGATTATCCAG 58 21004970 21005056 GGCATTACTAAACTTCACCA 57 NA Drosophila melanogaster 50 CG1631 FBgn0031101 FBtr0077297 1 1 1 60 X 20198683 20198702 TTTCGGATATTTCCACTAGC 57 20198724 20198743 TCGCTATCGCTAGTATAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 D2R FBgn0053517 FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461 3 4 5 81 X 19905587 19920745 ACTTTCTGGTAAATGGAGC 57 19905524 19905544 GAAGTAGAGCATATCACATCC 57 NA Drosophila melanogaster 50 inx5 FBgn0030989 FBtr0074698 2 1 1 60 X 19063118 19063136 GATGATGAAGGTTAGCGTC 57 19063076 19063094 AAGTTCCTGCATTAGGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Frq1 FBgn0030897 FBtr0074545,FBtr0100239 3 2 2 153 X 18062517 18063531 GAGAACAATGATGGCTCCA 59 18063774 18063794 CTATGTTGTACATCTCCTCCC 59 NA Drosophila melanogaster 50 CG15373 FBgn0030889 FBtr0112999 2 1 2 80 X 17938910 17938928 CTCAAACAACATCTGGACG 58 17938969 17939069 TACACCAGGTCTATCAATTTCC 59 NA Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089657,FBtr0089661 2 2 7 102 X 17836890 17836908 AACTACTTCTATCACCGCG 59 17835182 17836826 TGTGTTGACCTAATGTACCTG 59 NA Drosophila melanogaster 50 ppk23 FBgn0030844 FBtr0112998,FBtr0100574,FBtr0074491 1 3 3 122 X 17462374 17462392 AACAGTCGTTTCAAGTCCA 59 17462088 17462223 GATAAAGATACGTGAAGTGCTG 59 NA Drosophila melanogaster 50 CG5445 FBgn0030838 FBtr0074425,FBtr0074427,FBtr0074426 3 3 4 85 X 17197412 17198114 GATGAGTAACTGGAGCCTG 59 17198163 17198181 GGACGATCTTCATCGAAGG 59 NA Nonspecific Drosophila melanogaster 50 Arpc3B FBgn0065032 FBtr0113478,FBtr0074410 2 2 2 60 X 16999621 16999639 CCTTCTACCACTACGTACC 58 16999579 16999598 GTCGTTGGGAATATCAACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4829 FBgn0030796 FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337 3 5 5 93 X 16718722 16718740 CGAGAAGGGATACCATGTG 59 16718794 16718964 CAAATAGATTTGGTACTGCTCG 59 NA Drosophila melanogaster 50 Rbp2 FBgn0010256 FBtr0074281 1 1 3 152 X 16344621 16345313 AGAGGATACAATGATCGGC 58 16345429 16345447 GAAGTTGTTGTAGCGATCG 58 NA Drosophila melanogaster 50 CG4301 FBgn0030747 FBtr0074272 3 1 1 90 X 16308046 16308131 ATCAATCTGGACTACGACAC 59 16308184 16308202 CACAGGTCACTATGATCCA 58 NA Drosophila melanogaster 50 Stim FBgn0045073 FBtr0074161 1 1 3 80 X 15831778 15833078 AGAGCATAAGTTCCATGGG 59 15831716 15831734 GAACACTTCCACTGTAGCA 59 NA Drosophila melanogaster 50 UBL3 FBgn0026076 FBtr0074174,FBtr0074175 1 2 2 86 X 15744638 15744656 CACTGGGACTTCCATTAGG 59 15744453 15744591 GTCTTTGATCTTGTGAATTGGG 59 NA Drosophila melanogaster 50 Ac13E FBgn0022710 FBtr0074073,FBtr0100142 1 2 2 60 X 15410385 15410403 CGATGCCTACTACTTGGAG 59 15410283 15410301 CACCACGAAGTAAGTACGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG6324 FBgn0030647 FBtr0074037 2 1 1 144 X 15374529 15374547 GGACATTACTGGGACATCG 59 15374751 15374998 TTATTAAAGCGACGCTTTGC 59 NA Drosophila melanogaster 50 CG9400 FBgn0030562 FBtr0073920,FBtr0112982 3 2 2 61 X 14182365 14182384 ACAATGATTTAGACAGCGAG 57 14182323 14182344 GGGTATATTGTTGTCCAAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS15Aa FBgn0010198 FBtr0073792,FBtr0073793 2 2 4 60 X 13230407 13231550 CAAACAAATCCAGCCATGG 59 13230365 13230383 TGTTTATGCACTTCAAGGC 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 mRpL49 FBgn0030433 FBtr0073691 1 1 1 112 X 12801658 12801676 TCCAAGGAGACATTTGGAC 59 12801752 12801770 GAAGTGTATCTGACCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4404 FBgn0030432 FBtr0073694 2 1 1 60 X 12798360 12798379 GCAGAATCGAAAGTTTCGAC 59 12798319 12798340 CTTGTTATCCAGAATATCGTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15734 FBgn0030374 FBtr0110815,FBtr0073636 2 2 2 62 X 11980869 11980887 CTTGACTATTATTCGCCCG 58 11980745 11980763 AATCAATGCATTCTCGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fw FBgn0001083 FBtr0112806,FBtr0073580 1 2 2 97 X 11888948 11889034 ACCTATAAGATTGGAGCACTG 59 11888871 11888889 CTCCATTGTCCACTATCCG 59 NA Drosophila melanogaster 50 PhKgamma FBgn0011754 FBtr0090001,FBtr0090000 1 2 3 80 X 11592561 11592579 TCTAGTCGTTGATCCTTCG 58 11592623 11594664 CCCATTAACACCATTTGGT 57 NA Drosophila melanogaster 50 CG2157 FBgn0030244 FBtr0073382 3 1 1 114 X 10764122 10764219 CTCTGGGTGGATTAGATGG 58 10764297 10764315 GATCCATAGCCACCAAGAG 59 NA Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 2 8 9 95 X 10692568 10692661 CGAATAAGGGTGAAATTTGC 57 10692492 10692510 GCATGATCCGTTTAATGGT 58 NA Drosophila melanogaster 50 Hex-A FBgn0001186 FBtr0071361,FBtr0071362 2 2 2 60 X 9481077 9481095 GCCATACTCAATGACACCA 59 9481119 9481137 TGCAGTTGTGATTCTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297 3 4 6 120 X 9005028 9005123 TCCGAGCATGGATTTAATCC 59 9005449 9005467 GAATCTGTCGGATGAGGTC 59 NA Drosophila melanogaster 50 sdt FBgn0003349 FBtr0100376 1 1 7 81 X 8104009 8104030 GCATCTCTGATGAAGAATTGTG 59 8104067 8104454 CTATGACGTCTTCTAGTAACTCTC 59 NA Drosophila melanogaster 50 CG9650 FBgn0029939 FBtr0112959,FBtr0112957 2 2 6 122 X 7126488 7126507 TAAGTTCATCCAGCACAAGG 59 7126591 7126955 ATTGTCGTTCTAAGGCTGAG 59 NA Drosophila melanogaster 50 PpV FBgn0003139 FBtr0070921 2 1 1 76 X 6266311 6266329 GATTTGCTTACCATCGCTG 59 6266165 6266184 GTAATGATCTCGGGACTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3016 FBgn0029819 FBtr0070828 3 1 1 114 X 5771723 5771741 CCAAGAATCTTTACCGGCT 59 5771569 5771645 GTGTAGTACCACCGATGTG 59 NA Drosophila melanogaster 50 SK FBgn0029761 FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070769,FBtr0070766 3 5 7 96 X 5292152 5292440 AACTGACATGGCTAAGACAC 59 5292498 5292517 CTCTAGGTTGGTTAAACGCT 59 NA Drosophila melanogaster 50 l(1)G0334 FBgn0028325 FBtr0070708,FBtr0070710,FBtr0070709,FBtr0070711 1 4 4 145 X 4598141 4598234 ACAACAACTACGGAATGGG 59 4598343 4598361 ATAGTTGATGGCGAACTCG 59 NA Drosophila melanogaster 50 Mnt FBgn0023215 FBtr0070579,FBtr0070578 3 2 3 91 X 3593512 3593727 CGACAAAGCAGTTTGTCTG 59 3593780 3593800 CTGCATCGAATAGAATTGTGG 59 NA Drosophila melanogaster 50 CG10802 FBgn0029664 FBtr0070568 3 1 1 66 X 3377283 3377301 GATACTATTTCCCGAGGGC 59 3377331 3377349 CTTAACTGGAAATCCGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2918 FBgn0023529 FBtr0070411 2 1 1 95 X 2168125 2168144 GGTATCAAGGATCCCAACTC 59 2167975 2168070 GAAGCGTTTCCTATACAAATCC 59 NA Drosophila melanogaster 50 CG14812 FBgn0026090 FBtr0070372 1 1 1 105 X 1752907 1752925 AACTGGAGAAAGTCCTAGC 58 1752693 1752711 GGATCAATGTCTCCTTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 Adar FBgn0026086 FBtr0070299,FBtr0100557,FBtr0070300 3 3 3 60 X 1677571 1677591 AAAGTAACCACTGACTATGGG 59 1677613 1677698 GCTTTGCGATCTGATAGTC 58 NA DesignRelaxed Drosophila melanogaster 50 vnd FBgn0003986 FBtr0070110,FBtr0110929 3 2 2 86 X 488326 490393 GAACGAGCTATACGGTACC 59 490442 490461 GAACCAATGTAGGTGTACGA 59 NA Drosophila melanogaster 50 CG13377 FBgn0040369 FBtr0070106 3 1 1 68 X 152937 152955 AGTCATTGTACAAGGCACC 59 152823 152841 CTGTATACTGCGTAGGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG40339 FBgn0058339 FBtr0113867 2 1 2 137 U 1062289 1062307 GTACCCAATGGTGATTGAG 57 1062853 1062871 TGCCTTTCGTTATCTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sv FBgn0005561 FBtr0100344,FBtr0100342,FBtr0100343,FBtr0089327,FBtr0100345 1 5 7 82 4 1128897 1128918 GCTTTACGACAGTATTACAACG 59 1128961 1129108 AACCTGTTCCAATGGAAGG 59 NA Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211 2 4 7 182 4 1080191 1080209 CAACACAACCTCTCAACAG 58 1079960 1080047 TATGAGAAGAGTCCATTGCAG 59 NA Drosophila melanogaster 50 CG32021 FBgn0052021 FBtr0089244 2 1 1 141 4 928347 928366 TAACTTCTGATGATGTCGCC 59 928156 928174 TTTAAGGCCCTACGATCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131 3 5 5 84 4 372565 372585 CGATATACCACAACATGTTGG 59 372445 372522 GTGTCCAGCCATTATATTTGAG 59 NA Drosophila melanogaster 50 CG1774 FBgn0039856 FBtr0085798 2 1 1 60 3R 27419468 27419486 GATCAGTGGTCACATCTCG 59 27419507 27419528 CCTCACATAGATGGTAATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15556 FBgn0039821 FBtr0085737 1 1 1 60 3R 26955216 26955236 TCCAGAAGTGAGAAATGTGAG 59 26955176 26955194 GAAATGCGACATATTGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PH4alphaSG2 FBgn0039779 FBtr0085653 1 1 2 185 3R 26316038 26316108 CTACCGCAGGTATGTTGAG 59 26316257 26316330 AATGCACGGAACTCTTCTC 59 NA Drosophila melanogaster 50 CG31025 FBgn0051025 FBtr0085587,FBtr0085586 1 2 2 161 3R 25953565 25953634 TTTCAATGTCAGGATTCCC 57 25953422 25953440 ATTTCCCTCACCTAGAACG 58 NA DesignRelaxed Drosophila melanogaster 50 CG15526 FBgn0039744 FBtr0085562 3 1 1 68 3R 25882148 25882167 CATATCCATTGAGCTCATCG 58 25882197 25882216 TTGGATGTTTCCAAGATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7903 FBgn0039730 FBtr0085608 3 1 1 211 3R 25820053 25820071 ATAGTGACTTTCAGGGAGG 57 25819801 25819879 TGGATTTCCTCCATTAGTCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG31202 FBgn0051202 FBtr0085510 3 1 1 60 3R 25754754 25754773 CAGGCGATAGAGAAGTACTG 59 25754713 25754731 TGTTAACGTCCATCACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15506 FBgn0039686 FBtr0085456,FBtr0085457 3 2 2 60 3R 25547605 25547625 TATCCTTACAGCCAGTATCCA 59 25547645 25547665 AGTAGTTCTGCCTTATGAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ef1gamma FBgn0029176 FBtr0085392,FBtr0085393 1 2 2 190 3R 25046028 25046168 GGAACTCTGTACACTTACCC 59 25046384 25046402 CTCAAGTACTGTCCTTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14518 FBgn0039621 FBtr0085341 2 1 1 98 3R 24851100 24851118 ACGATCAATCACACCTGTC 59 24851688 24851707 ATATTCTCCAGTGGGAATGG 58 NA DesignNoJunction Drosophila melanogaster 50 Mes-4 FBgn0039559 FBtr0085267 1 1 1 121 3R 23761873 23761891 GACAAAGGTTGTCATCTGG 58 23761702 23761789 GCCTATTAAGAGTGACAACG 58 NA Drosophila melanogaster 50 Ets98B FBgn0005659 FBtr0085224 1 1 1 211 3R 23570241 23570319 CAAATATCGCAGGATCCCA 59 23572154 23572172 TTCCAAATTTCCAACTGGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG6599 FBgn0039513 FBtr0085166 1 1 1 80 3R 23187090 23187170 GTCTTCAGATAAAGATGGCC 58 23187213 23187231 CCTATCAAGGTGTCAATGC 58 NA Drosophila melanogaster 50 spn-D FBgn0003482 FBtr0085116 2 1 1 91 3R 22992189 22992364 TCGATCATCCCGATATTAAGC 59 22992417 22992435 AAGCATCTCGTAACGATGG 59 NA Drosophila melanogaster 50 spz FBgn0003495 FBtr0085140 3 1 12 142 3R 22892380 22893090 ATCACTTACAGAGGACGGA 59 22892129 22892147 GTCATTCCTCAAAGGACGA 59 NA Drosophila melanogaster 50 gro FBgn0001139 FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963 3 5 5 104 3R 21870081 21870172 CGCCATTATGTTATGTACTACG 59 21870236 21870255 AAGTAGCTGGTTGATCAGTG 59 NA Drosophila melanogaster 50 msi FBgn0011666 FBtr0084881 2 1 2 92 3R 21345444 21389814 AATCTAAGGTTTCAGACACCC 59 21400624 21400642 GGCATATAGAGAAGTGGCG 59 NA Drosophila melanogaster 50 CG10550 FBgn0039321 FBtr0084857,FBtr0084858 2 2 3 227 3R 21133346 21133425 ATATACTGCTGAAGGATGGC 59 21133138 21133156 TAATCAATTCGTCAGTGGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG11852 FBgn0039297 FBtr0084809 3 1 1 95 3R 21064138 21064156 TAAGCTCAAGGTTCTGGTG 59 21064270 21064288 AACTGATTCAGATTGGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11844 FBgn0046214 FBtr0084775,FBtr0084777,FBtr0113354 3 3 4 85 3R 20949829 20950321 ATAGAACTGGCGTCAAGTC 59 20950370 20950388 TAAGTCCTCAATGTCCTGC 58 NA Nonspecific Drosophila melanogaster 50 tok FBgn0004885 FBtr0084689,FBtr0084690 1 2 2 86 3R 20568665 20568888 CAGTCACAGAGTCAGAGTG 59 20568938 20568956 ATTCTTGTAGCTGGATGCT 58 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625 1 8 17 81 3R 20521108 20521126 GACGCTGATCAAGAAATGC 59 20521842 20528756 ACGAGTGATATCACCTAAGTC 58 NA Drosophila melanogaster 50 Myo95E FBgn0039157 FBtr0084579,FBtr0100518,FBtr0100519,FBtr0100516 2 4 7 111 3R 19982894 19982994 AGTTTATATCGTGTCGCCC 59 19982801 19982819 ACTGTCTGATCTTCCACTG 58 NA Drosophila melanogaster 50 CG12268 FBgn0039131 FBtr0084513,FBtr0084514 1 2 2 93 3R 19769945 19769963 TTCTGCGTCATCTTCTTCC 59 19769812 19769891 GTTGGACATTGAGTAAGAATGG 59 NA Drosophila melanogaster 50 Or94b FBgn0039034 FBtr0084342 1 1 1 60 3R 18815533 18815551 CGATACTTCTACGCTTGGG 59 18815575 18815593 TGTTGGATAGACAGCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 loco FBgn0020278 FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273 1 4 4 85 3R 18446567 18446653 AGCACCAAGATGAACTACTC 59 18446501 18446519 GTCGAAGTTGATTTCGGTG 59 NA Drosophila melanogaster 50 Nrx-1 FBgn0038975 FBtr0084256 1 1 1 106 3R 18304760 18304836 CTATGATGAATCGATTGCCT 57 18304903 18304923 CCAGTGCTATATTATCCTCCT 58 NA Drosophila melanogaster 50 CG7069 FBgn0038952 FBtr0084215 3 1 1 60 3R 18199135 18199156 CAATGATAGGGCTGAGATAGAG 59 18199177 18199195 CTTCTTGGTGCTCAATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sar1 FBgn0038947 FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208 3 5 5 60 3R 18184317 18184336 TTCACTACATTCGACTTGGG 59 18185255 18185273 GGAAGTAGTCCTTCCAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 1 22 22 84 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202454 17202549 TTCAGGAATACGATAGCGT 58 NA Drosophila melanogaster 50 RpS20 FBgn0019936 FBtr0083964 2 1 1 125 3R 16648269 16648287 GCAAAGAACCAGAACTTGC 59 16648604 16648862 GATTCTCATCTGGAAGCGA 59 NA Drosophila melanogaster 50 Nep4 FBgn0038818 FBtr0083936,FBtr0083937 3 2 2 143 3R 16479557 16479577 ATATACATAAGTGGTGGACGG 59 16479272 16479452 CTGCGATATTCTCACCCTG 59 NA Drosophila melanogaster 50 CG10877 FBgn0038804 FBtr0083950 3 1 1 60 3R 16388723 16388741 CAAGACCAACAAGGATCGT 59 16388681 16388700 CATTTGCTCTAGGATTCCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpb4 FBgn0053520 FBtr0100273,FBtr0100275 1 2 5 94 3R 14079506 14079584 GAGATTGGAGATCTGCCTG 59 14079430 14079448 TAGTCCAAATACGACTGCG 59 NA Drosophila melanogaster 50 CG14330 FBgn0038512 FBtr0083443 3 1 1 212 3R 13282271 13282289 ACTCTTCTACGAGATACCG 57 13282077 13282095 ACTTTGCGGATAGAATAGC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG31266 FBgn0051266 FBtr0083403 3 1 1 60 3R 12958871 12958890 AAAGAATATAACCTTGGCGG 57 12958913 12958931 GGCAAAGGTCAACTTATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8925 FBgn0038404 FBtr0083253,FBtr0113241 2 2 2 114 3R 12005514 12005532 CCGACGTAGTCTTATTGGT 58 12005609 12005688 AATGAGACACTTGGCTATGG 59 NA Drosophila melanogaster 50 CG31088 FBgn0051088 FBtr0083241 3 1 1 81 3R 11776229 11776247 CAATGCCATTAACTCGCAC 59 11776113 11776132 TGAATAAGACCCTGAAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31446 FBgn0051446 FBtr0083163 3 1 1 64 3R 11519480 11519498 ATGTCAGCGATAACTCAGG 59 11519707 11519726 ATAATGGTCGAAGGATTGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG6125 FBgn0038337 FBtr0083105,FBtr0083106 3 2 2 88 3R 11229093 11229168 TTAAACAGCATGAATCCACG 58 11229024 11229042 CAACTCAGATCGTAGTGCA 59 NA Drosophila melanogaster 50 Cp190 FBgn0000283 FBtr0083127,FBtr0083126 3 2 2 72 3R 11098710 11098793 CAGAGAATACTACTGGGCC 58 11098656 11098674 TACGACGGAATGCTAATGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31303 FBgn0051303 FBtr0083047 1 1 1 139 3R 11026449 11026469 CAAGCGAAAGAATAGCAACTC 59 11026570 11026588 TATTGAGATGATTGCGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12207 FBgn0038220 FBtr0082922,FBtr0082921 2 2 3 146 3R 10116533 10124520 GCATTCGCAGTTTCAAGAG 59 10124630 10124648 ATGAGGGTCTCATTGTTCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG14840 FBgn0038217 FBtr0082952 3 1 1 118 3R 10086801 10086819 AACGAATGACAAGCAATGC 59 10086701 10086721 CTTTCTTCGAATTAGGTTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 140up FBgn0010340 FBtr0082909 2 1 1 99 3R 9950700 9950718 ATTCACAGTCAACTTTGCC 58 9950557 9950575 GTACACCGACATACAAGTG 57 NA DesignNoJunction Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082803,FBtr0082807 1 2 8 80 3R 9490586 9490607 ACTAGGCAGACAATCTAAACTC 59 9490648 9491184 CCTTGAGATCTTAATGCGC 58 NA InUTR Drosophila melanogaster 50 CG32473 FBgn0052473 FBtr0082743,FBtr0082744,FBtr0082742 2 3 3 95 3R 9136816 9136899 GGAATTTGACGTGAAGCAG 59 9136956 9136976 GTGAGCTTATAAGTACTGCCA 59 NA Drosophila melanogaster 50 CG8508 FBgn0038123 FBtr0082783 1 1 1 60 3R 9011793 9011811 CTGGAGAAACCTACATGCT 58 9011751 9011770 ATTTCGGTATCGTCAATGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp313a5 FBgn0038005 FBtr0082619 1 1 1 91 3R 8059775 8059793 CTTACTCGCGGAATTTGTC 58 8059652 8059720 CCATAGTAATTTGAGCGGC 58 NA Drosophila melanogaster 50 CG14736 FBgn0037986 FBtr0089692,FBtr0089691 1 2 3 80 3R 7866653 7866731 CTAGGTCGTCTTAGGAAAGG 58 7866773 7866792 ATCTACTCTGTGAGTCTCGT 59 NA Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 1 15 15 89 3R 7811197 7811279 CCCAAGAATAACATGCTTAAGC 59 7811129 7811148 CAGCTGTGTAAGATTAGCCT 59 NA Drosophila melanogaster 50 KP78a FBgn0026064 FBtr0082407 3 1 1 60 3R 7175908 7175927 GATCATGAAACTGCTGAACC 59 7175867 7175885 CTCAGACTCGATGACTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6666 FBgn0037873 FBtr0082372 1 1 1 60 3R 7035091 7035111 CAAGTTTATCATCGCCTATCC 58 7035051 7035069 GAGGAGATGCCTAATACCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pug FBgn0020385 FBtr0100144,FBtr0082266,FBtr0082264,FBtr0082265 3 4 4 152 3R 6525677 6525696 TTAAGGATTGTCCAGGTTGG 59 6525808 6525952 CAGATCGTTTATCTTATCGAGC 58 NA Drosophila melanogaster 50 tws FBgn0004889 FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190 3 8 8 80 3R 5954404 5954422 TCTCCAGGGATTACTTGAG 57 5954228 5954360 ATTCATGAACCGGATAGGT 58 NA Drosophila melanogaster 50 CG8301 FBgn0037717 FBtr0082073 3 1 1 99 3R 5410207 5410226 ATTCATCCATCTGAAGACCC 59 5410288 5410951 ATAGGATGCAAAGACCTCC 58 NA Drosophila melanogaster 50 ps FBgn0026188 FBtr0082038,FBtr0111031,FBtr0111029,FBtr0111030,FBtr0082037,FBtr0111028,FBtr0111027,FBtr0082039,FBtr0111032 1 9 9 190 3R 5271436 5271454 AGAATGCCATCAACTCGAG 59 5271606 5271699 CATGGCAACCTTAATATGCTC 59 NA Drosophila melanogaster 50 Cenp-C FBgn0086697 FBtr0089973 1 1 1 80 3R 4393442 4393532 ACTAAATACTACCGGTATTCGG 59 4393573 4393591 CTAGGATCCATGGTGTGAC 59 NA Drosophila melanogaster 50 CG14463 FBgn0037535 FBtr0081783 3 1 1 120 3R 3826193 3826211 GAGGACATAGTGCTAAACG 57 3826375 3826455 GGGATTGACTATTGAATAGGG 57 NA Drosophila melanogaster 50 CG18744 FBgn0042101 FBtr0114516 1 1 1 114 3R 3623180 3623198 CTCCTAATGCAAGAACCCA 59 3623022 3623103 AATTCGAAGCCAAAGATGTG 59 NA Nonspecific Drosophila melanogaster 50 SytIV FBgn0028400 FBtr0081578 2 1 1 216 3R 3094842 3094923 CAAGAATGAGGTCATCGGT 59 3095103 3095121 TCACATGACTCCCATTTCG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG1939 FBgn0037469 FBtr0081638 2 1 1 60 3R 2908468 2908487 AAGATCGTCTGTGTAACCTG 59 2908581 2908599 CATTGCGGGCTATTAATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Dfd FBgn0000439 FBtr0081621 3 1 1 120 3R 2627071 2627355 GATGAATGAGTGCATTCGT 58 2627439 2627457 CTGAGATCCCGGATAAGAG 58 NA DesignRelaxed Drosophila melanogaster 50 lab FBgn0002522 FBtr0081696 3 1 1 60 3R 2488345 2488363 ACTTCAATCGCTACTTGAC 57 2488303 2488321 TTAAGCTGCAACGTATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi13 FBgn0037422 FBtr0078605 1 1 1 60 3R 2118350 2118370 GATAATTCACTCTCATGCACC 58 2118392 2118410 GCTGGAGGATAAATCACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi9 FBgn0037416 FBtr0078599 1 1 1 107 3R 2086547 2086565 CAAAGACTCCATCCAGGAC 59 2087109 2087127 ATCTTCAGCTTGAAGAGCA 58 NA DesignNoJunction Drosophila melanogaster 50 Rm62 FBgn0003261 FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653 2 6 6 155 3R 1829622 1829746 GAGGAGAAATTGAAGACCCT 59 1829486 1829504 CTTGTCACCGTGAATAGCT 59 NA Drosophila melanogaster 50 CG31551 FBgn0051551 FBtr0078706 1 1 1 60 3R 1456842 1456860 ATGAAGAATCAGAGCAGGG 59 1456884 1456902 GTAGAGTGTGAACTTGGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CRMP FBgn0023023 FBtr0089685,FBtr0089686 2 2 4 85 3R 1402974 1403325 CTGGCTTATGACGATTTGC 59 1403374 1403392 GTAAAGTCACCCTTTCCGA 59 NA Drosophila melanogaster 50 CG16708 FBgn0037315 FBtr0078804,FBtr0078803 3 2 2 123 3R 1185797 1185815 CTCCCGTTACAGTCATCTG 59 1185264 1185711 CAAATTGCGAATATCACCAC 57 NA DesignRelaxed Drosophila melanogaster 50 CG31538 FBgn0051538 FBtr0078819 2 1 1 60 3R 1102062 1102083 GAAGCAAATTGTAGAGTCAGTG 59 1102023 1102041 AAAGGTCCTTTGATGAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1116 FBgn0037297 FBtr0078775,FBtr0078774,FBtr0078776 3 3 3 211 3R 1045991 1046009 CAAGATCACCATTGCTACG 58 1046184 1046267 CGGTTACGTTCTTAAGGTG 58 NA DesignRelaxed Drosophila melanogaster 50 tacc FBgn0026620 FBtr0089955,FBtr0089953,FBtr0089952,FBtr0089954 1 4 7 82 3R 570241 570259 AAAGTTTGGAGGTCTTCCC 59 569896 570197 TCAGTTGAGTATCCATATCGG 58 NA Drosophila melanogaster 50 CG11739 FBgn0037239 FBtr0078915,FBtr0078913,FBtr0078916,FBtr0078914 1 4 4 80 3R 205701 205719 TCAATCAGACATTCAACGC 58 205763 205844 AGGTAACTAGTTGCTGCTG 59 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897 2 5 15 193 3R 110111 120843 AATTAAGTGCCGTTAAAGGC 59 120999 121298 GATGTTGTACTTATCGCGA 57 NA DesignRelaxed Drosophila melanogaster 50 CG31516 FBgn0051516 FBtr0078987 3 1 1 68 3R 44920 44938 CTCAGACTCTACGACATCC 58 44870 44889 TTTAAAGACCACCGACAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Or-CD11 FBgn0086082 FBtr0114358 3 1 1 62 3L 20446836 20446854 AATGTGAAGAGCATTCCAC 58 20446879 20446898 TACGGAATAGTCAAGCACAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13239 FBgn0037197 FBtr0078548 2 1 1 125 3L 22854212 22854230 CCACCATCGCATACTATCC 59 22854318 22854337 AATAGGCTTGGTAGTACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33772 FBgn0053772 FBtr0091773 1 1 1 61 3L 22644973 22644994 GACAGAAACAATCTTCTACGTC 59 22644900 22644918 ATGTGGCCACTTGATATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Ten-m FBgn0004449 FBtr0078509,FBtr0112842 3 2 2 141 3L 22294408 22295906 CTTTAACGAAAGTCGATCAGC 59 22294287 22294305 CATTAGGTCGAACCATCCA 59 NA Drosophila melanogaster 50 Cpr78Cc FBgn0037069 FBtr0078338 2 1 1 90 3L 21293911 21293929 AACTACCAATACGCCTTCG 59 21293983 21294001 AGATGTAAGAGCTGCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Edg78E FBgn0000551 FBtr0078408 2 1 1 162 3L 21290518 21290536 ACATCTCGCTGACATACAC 59 21290374 21290393 GCTACTCCAGATTACTGCTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG10512 FBgn0037057 FBtr0078297,FBtr0078300,FBtr0078298 3 3 4 297 3L 21199477 21199495 GATGCCATTAGGAGGATCC 59 21200564 21200583 CTTCTTCTCCTTGTCTCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Paps FBgn0020389 FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885 3 6 6 94 3L 19853426 19853508 CTAGACAGCATGGAGATCC 58 19853566 19853584 AACTCATCCTTCCTCTTGG 58 NA Drosophila melanogaster 50 Gyc76C FBgn0013974 FBtr0100157,FBtr0100156,FBtr0100155 2 3 3 88 3L 19717434 19717452 ATAACTCGAACAACATGCC 58 19717244 19717382 GATGAGCTTGTACTCTGGA 58 NA Drosophila melanogaster 50 825-Oak FBgn0052208 FBtr0074985 1 1 1 211 3L 19465026 19465044 AATTACAATGGAATCGCCG 58 19464833 19464851 ATGAGAAATGGTGCAGGAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 GNBP2 FBgn0040322 FBtr0075094,FBtr0075095,FBtr0075096 3 3 4 135 3L 18667370 18667389 TTCTATAGCATCAAGCCTCC 58 18667190 18667272 GTTGGAGCATCAGATAGGG 59 NA Drosophila melanogaster 50 CG18233 FBgn0036795 FBtr0075103 3 1 1 101 3L 18599371 18599389 TTGAAAGGCTTTGCAACAG 59 18599521 18599539 TTGTAATTGGCTATTGGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7408 FBgn0036765 FBtr0075142 3 1 1 130 3L 17873604 17873691 TAAATACGGGAATGCAGCA 59 17873785 17873803 CAAATGCCACTTTCCAAGG 59 NA Drosophila melanogaster 50 CycT FBgn0025455 FBtr0075205,FBtr0075206 3 2 2 60 3L 17548446 17548464 CTGACAGATGAGTTCATCG 57 17548404 17548423 TAAGCTTAGACTTCAGACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tap FBgn0015550 FBtr0075216 2 1 1 60 3L 17353533 17353552 GTTCAATCAACCTGGATCTG 58 17353574 17353593 GTAATCCTCTCACCACTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13723 FBgn0036705 FBtr0075213 3 1 1 60 3L 17257800 17257820 CCTGGTAATCTACTACTCCTG 58 17257842 17257860 ATATACGCAATACTGTCGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdh FBgn0011693 FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536 2 4 4 131 3L 16346822 16346840 CATCATTCCCGTTTACGGA 59 16346645 16346663 ATGTCCGTCATTGTAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13062 FBgn0036603 FBtr0075368 2 1 1 102 3L 16307572 16307713 AGTTGAAAGTAGTGTCGCT 58 16307778 16307797 GGATAGTAAGGGATTTCCGG 59 NA Drosophila melanogaster 50 CG13049 FBgn0036592 FBtr0075476 2 1 2 80 3L 16275061 16275079 GATATTCCGTGGGCTACAG 59 16274999 16275017 TTAGCTTGAAGGCAGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf4 FBgn0010280 FBtr0075450,FBtr0075451 3 2 5 112 3L 16108920 16110652 AGAGTCCATCGTCTATGAC 57 16110728 16110746 ATTTAGTTGCGTCAGATGC 58 NA Drosophila melanogaster 50 Notum FBgn0044028 FBtr0075436,FBtr0075435 3 2 2 84 3L 16023316 16023335 GGATACCGACTATATCCCAC 58 16023445 16023464 CATTATCCACTCGCATTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 HGTX FBgn0040318 FBtr0114619,FBtr0075720 2 2 2 94 3L 14577188 14583109 CAGGTTAAGGTCTGGTTCC 59 14577112 14577130 CCCATATCGTCCTGTTTCC 59 NA Drosophila melanogaster 50 CG9238 FBgn0036428 FBtr0075724 1 1 2 80 3L 14543149 14543167 TATTCAGTCACAGTCCACC 58 14540572 14543105 CGTCATTGTAGTTCAACGA 57 NA Drosophila melanogaster 50 CG10724 FBgn0036357 FBtr0075845,FBtr0075846 3 2 2 62 3L 13409019 13409104 TCATCAAGAATGCCCATCC 59 13409130 13409148 CAGTGTTATTGTCCAGCCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG14113 FBgn0040814 FBtr0075837 2 1 1 60 3L 13322463 13322482 TATGCACTCAGATATGTCCG 59 13322505 13322523 CCATAACCTGATCGCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34032 FBgn0054032 FBtr0100087 2 1 1 61 3L 12883540 12883558 ACAATGTGGAACCTATCCG 59 12883651 12883669 TGTCGATGATGAAATCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG10663 FBgn0036287 FBtr0113167,FBtr0113168,FBtr0075977 3 3 3 97 3L 12469620 12469638 GATGGAATAGCTCTCAGGC 59 12469321 12469560 CGGCATTTCTTGTATCTCCT 59 NA Drosophila melanogaster 50 Pbgs FBgn0036271 FBtr0076011 1 1 1 60 3L 12263810 12263828 AGATGAACAGTGTATCCCT 57 12263768 12263788 GGTCCATAGAAATTGGATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17153 FBgn0036248 FBtr0075992 3 1 1 124 3L 12111945 12111963 TGAAGTCACTGGGTTTCAC 59 12112111 12112129 CTCGAAGTATTCCCACTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18815 FBgn0042138 FBtr0076105,FBtr0076104,FBtr0076103 1 3 3 80 3L 11622535 11622553 GAATGTGACGTTCAAGACG 59 11622597 11622691 CTGATGATGTCCTTGACGT 59 NA Drosophila melanogaster 50 nudE FBgn0036059 FBtr0113158,FBtr0113159 2 2 4 96 3L 9894107 9894450 ATTCGCTTAAGAATCCCGAG 59 9894509 9894527 TTTCTTAACATGTCGGCCA 59 NA Drosophila melanogaster 50 CG10809 FBgn0036052 FBtr0076366 3 1 1 299 3L 9851661 9851680 CTCATCTTACGCTACATGGT 59 9851107 9851125 CTTGTCACAATGCCAACTC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 I-2 FBgn0028429 FBtr0112935,FBtr0076370 3 2 2 72 3L 9829169 9829188 TACTAAAGACTTCGCGTAGC 59 9829048 9829066 TTCAGCTCATCGAACTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326 1 11 11 88 3L 9773789 9773875 CCTCATGAGATCTTTGTGC 58 9773927 9773945 TCATACTTGATCCAACGGG 59 NA Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323 2 4 11 114 3L 9774994 9775718 CTACCTGGGTAATTTGTCTG 57 9775795 9775813 CATATCGTCCTTCATGTCG 57 NA Drosophila melanogaster 50 CG3280 FBgn0036017 FBtr0076381 3 1 1 80 3L 9600542 9600563 GATACTGGTCAATATACTGGTG 57 9600603 9600768 TCCTCAGAGTGATTAACCAG 58 NA Drosophila melanogaster 50 CG32037 FBgn0052037 FBtr0076469 3 1 1 128 3L 9484668 9484686 GTGGTAAGATACCCGACAC 59 9483900 9484577 TGTAGTACTGATACACCTGC 58 NA Drosophila melanogaster 50 CG32036 FBgn0052036 FBtr0114525 3 1 1 83 3L 9481436 9481454 CGATTGGTGGTACAATGTC 58 9481311 9481329 GGAATGTAGGGATTGTGCT 59 NA DesignNoJunction Drosophila melanogaster 50 eIF-4E FBgn0015218 FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487 1 7 7 92 3L 9393610 9393692 AGAACATTCGTCCCATGTG 59 9393536 9393554 TATCCAGATCGGTCTTGGA 59 NA Drosophila melanogaster 50 PGRP-LA FBgn0035975 FBtr0076434,FBtr0076432,FBtr0076435,FBtr0076433 2 4 4 148 3L 9330628 9330646 CATTACCTTTATGGGCGAC 58 9330758 9330841 TTCTGGTCACCTTAGTCTG 58 NA Drosophila melanogaster 50 Argk FBgn0000116 FBtr0112792 2 1 6 108 3L 9043450 9044238 AGGAGATGGCAAACAAGAC 59 9043360 9043378 GTACTTCTTCAACAGCGAC 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG6902 FBgn0035899 FBtr0076657 3 1 1 61 3L 8484483 8484502 CTCTGTGCGTGTTATTTGAC 59 8484441 8484459 TCTCGCAGACATGATATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13670 FBgn0035873 FBtr0076708 2 1 1 61 3L 8315232 8315250 GAAGGATATGTCGAGGCAG 59 8315275 8315293 TAGTAGTCCTCGTCACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGEF4 FBgn0035761 FBtr0076886,FBtr0076885 3 2 2 146 3L 7314973 7315051 GCAAATGCGAATATGATACG 57 7314846 7314864 CCTTTCCCATTGGATTTCC 58 NA Drosophila melanogaster 50 CG13300 FBgn0035699 FBtr0077007 2 1 1 64 3L 6325905 6325923 TATCTGTGTCCATATCCGC 58 6325859 6325877 AGTAGGAAATTCGGATGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or65b FBgn0041624 FBtr0077005 1 1 1 98 3L 6319956 6319974 CTCTGCGTAATAATCAGGC 58 6320036 6320107 TTGGTTAAGTATAGCGCTG 57 NA Drosophila melanogaster 50 Trn FBgn0024921 FBtr0077002,FBtr0077000,FBtr0077001 1 3 3 107 3L 6190650 6190724 TACAGAAGATTCTGCACGG 59 6190795 6190813 TATACATTGTGGTCAGGCG 59 NA Drosophila melanogaster 50 PGRP-LD FBgn0035635 FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577 2 4 4 107 3L 5775936 5776021 TGCATAAGCTGGAAAGGTC 59 5776092 5776110 GATACTGGCTCCGATAGTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG4611 FBgn0035591 FBtr0077165 3 1 1 60 3L 5130653 5130671 CAGCTGCTAGAAAGAAACC 58 5130695 5130713 CTGGGTAAATCATCTTGCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11347 FBgn0035542 FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141 2 6 6 226 3L 4419447 4419465 TATTAGGTCCACCCAGGAG 59 4419654 4419749 TGTTCTTGCTCTTCTGACTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG15019 FBgn0035541 FBtr0073335,FBtr0113139 1 2 2 60 3L 4405574 4405593 AGGAATTGATCTACGAGCAC 59 4405533 4405552 TTGGTCACCTTGACTTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32240 FBgn0052240 FBtr0073336 1 1 1 171 3L 4381221 4381239 AGAACTGAATCAGTGCGAC 59 4381005 4381024 TGTGTTCTATAAAGGGTCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG15014 FBgn0035532 FBtr0073340 2 1 1 60 3L 4321295 4321313 CAATGGCAACGATAAGGAG 58 4321253 4321272 CTCATCGTCATTAGACTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0110922,FBtr0073132,FBtr0073135,FBtr0110924,FBtr0073131,FBtr0073134,FBtr0110923,FBtr0110920,FBtr0110925,FBtr0073133,FBtr0110921 2 11 11 118 3L 3552857 3578300 CAGATTAACAATTTCCCGCG 59 3578378 3578399 CGTTGTATGGAACTTTGTTACC 59 NA Drosophila melanogaster 50 kst FBgn0004167 FBtr0112840,FBtr0073070,FBtr0073072,FBtr0073071 3 4 4 80 3L 3365741 3365818 AGTCCATGAAGCAACAGTC 59 3365860 3365880 AGTTACGAGAACTAACTGGTG 59 NA Drosophila melanogaster 50 CG14968 FBgn0035431 FBtr0073087,FBtr0073089,FBtr0073088,FBtr0073086 1 4 5 80 3L 3300774 3300792 CTCCAACAACAGTAGTACC 57 3300037 3300730 ATGTACTTCACCTTGAACG 57 NA Nonspecific Drosophila melanogaster 50 CG14959 FBgn0035427 FBtr0073050 1 1 3 163 3L 3267257 3267275 CTTCTATGCCGACATGGAG 59 3267539 3267618 AGAACCATTTGGGTGACTC 59 NA Drosophila melanogaster 50 Cyp4d20 FBgn0035344 FBtr0072967 2 1 1 105 3L 2477510 2477704 TTGACGTGATAACAGAGGC 59 2477361 2477379 TCCGGTTGGATATAGACCA 59 NA Drosophila melanogaster 50 CG13800 FBgn0035338 FBtr0072891 3 1 1 60 3L 2406755 2406776 CTTGATGTTACTACTAGCACCT 59 2406796 2406815 TATCGTTAGAGGTTGGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9018 FBgn0035318 FBtr0072910,FBtr0072909 2 2 2 223 3L 2236218 2236236 CTACTTGCCTTTGGGAGAG 59 2235936 2235954 CATTGTAGTCGTTCAGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 sls FBgn0086906 FBtr0072848,FBtr0072849 3 2 2 102 3L 2091321 2091339 AGTTTAAGACGACGGTGAC 59 2091119 2091256 TCGAAGATCATCTGGAAGTC 58 NA Drosophila melanogaster 50 Patj FBgn0067864 FBtr0072781,FBtr0072780,FBtr0072779 1 3 3 111 3L 1800627 1800645 AGTAAGGGACTCCCTAGAC 58 1800780 1800798 GTAGTACTTGTGACGGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12104 FBgn0035238 FBtr0072825 1 1 1 62 3L 1601689 1601708 CAAATGCAAGTGATAGTGCA 59 1601646 1601664 ATAGACGTTCTTCTGCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SA-2 FBgn0043865 FBtr0113348,FBtr0072715 3 2 2 146 3L 1434913 1434995 TACGTAAAGTACCACGCTC 59 1434785 1434803 ATGACGAGTATCATCTGGG 58 NA Drosophila melanogaster 50 CG13914 FBgn0035209 FBtr0072678 1 1 1 84 3L 1332008 1332026 AAGATGTACAACCTCAGGC 59 1332074 1332092 GGTCACTGCTAGACATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rac1 FBgn0010333 FBtr0072730 1 1 1 144 3L 1301873 1301891 CAAGTATCTGGAGTGCTCG 59 1301747 1301765 CCGACCAACTGTCTAACTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13908 FBgn0035178 FBtr0072618,FBtr0113121 1 2 2 60 3L 989203 989221 GAATGTATGCCAGGATCCC 59 989243 989263 ACGTCTTACCATAATCTCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 uzip FBgn0004055 FBtr0072397 2 1 1 102 2R 20915916 20915934 TTTAGTCGAAACAGAGCCC 59 20915997 20916075 CTTCCTAGTAACCAGTTCAGTC 59 NA Drosophila melanogaster 50 Phk-3 FBgn0035089 FBtr0072404 2 1 1 60 2R 20858731 20858749 AAGTACGACAGTGTCAACG 59 20858689 20858708 GATAATTACCCAACACTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34413 FBgn0085442 FBtr0112685,FBtr0112684,FBtr0112683,FBtr0112686 2 4 4 80 2R 20770531 20770606 TTCCTGCAAGTGATAACGA 58 20770649 20770668 AAAGTTCACTAGGATAGGCG 59 NA Drosophila melanogaster 50 CG33228 FBgn0053228 FBtr0072331 1 1 1 68 2R 20556281 20556299 TCGCCAAATATCCACTGAG 59 20556175 20556193 GTAGTTGGGACCCATAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11406 FBgn0034990 FBtr0100169,FBtr0072276 3 2 2 105 2R 20090339 20093348 TATCCATTGGATCGTAGCA 57 20090092 20090270 ATTTGCCGCTATTGATGAG 58 NA Drosophila melanogaster 50 CG4324 FBgn0034956 FBtr0114534,FBtr0072197 3 2 2 117 2R 19903819 19903840 AGTACTACTAGTGCTGTATAGC 58 19903663 19903741 CAAGGTAACTGACTGTGGA 58 NA Drosophila melanogaster 50 CG5594 FBgn0025698 FBtr0072137,FBtr0072136 2 2 4 98 2R 19797272 19797290 TACAACCAGGATGAGTCTG 58 19797351 19799213 GATATCACCTGAGTCATCGT 58 NA Drosophila melanogaster 50 shu FBgn0003401 FBtr0072237 1 1 1 100 2R 19729909 19729927 TGAGCTCACTGAACTACTG 58 19729752 19729771 GTTGTAAACGATCATCAGGT 57 NA DesignNoJunction Drosophila melanogaster 50 alphaPS5 FBgn0034880 FBtr0072063 1 1 1 80 2R 19447455 19447474 TTGGTACATCATTCTGTCCC 59 19447516 19447587 AAGAACCGAAGCTTGTAGAG 59 NA Drosophila melanogaster 50 CG30412 FBgn0050412 FBtr0072044,FBtr0072043 3 2 2 76 2R 19206418 19206436 TTTACGGACTTCGTAAGGC 59 19206360 19206378 TTGATCTGCTTGAAACCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30190 FBgn0050190 FBtr0071950 3 1 3 145 2R 18817594 18817731 CAACTACAACATTCGCAGC 59 18817840 18817927 TCATCTCTTCCAGCAACTC 58 NA Drosophila melanogaster 50 CG30275 FBgn0050275 FBtr0071876 2 1 4 80 2R 18597711 18597732 TCTGATATTTAGGGATTTGGCC 59 18597772 18597841 CTGTACTTATAGCCGTCGAC 59 NA Drosophila melanogaster 50 CG9304 FBgn0034674 FBtr0071726 3 1 1 110 2R 17862232 17862251 GTGTTCCTTTACATCTGGGA 59 17862377 17862459 CATCATAAAGGAGGTGCGT 59 NA Drosophila melanogaster 50 Tbp FBgn0003687 FBtr0071679 2 1 1 68 2R 17574353 17574371 AAATAGCATTGCATGCGAG 59 17574303 17574321 GGATTCGCATAATCACAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10306 FBgn0034654 FBtr0071670 3 1 1 78 2R 17573048 17573066 GTCCTATGTGCAGGATCAG 59 17573108 17573126 GAACTGGTACAGTTTCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30222 FBgn0050222 FBtr0071655,FBtr0071656 3 2 2 104 2R 17470719 17470737 CTTAGACGCTTTGATGAGC 58 17471237 17471312 ATCGAAGTCAGTGATTCGG 59 NA DesignRelaxed Drosophila melanogaster 50 cv-2 FBgn0000395 FBtr0071610 2 1 1 71 2R 17251241 17251259 AAGTCCAACTGAAGAACCA 58 17246674 17251206 AATTCACGAATCCGTTCTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG12484 FBgn0086604 FBtr0112775,FBtr0112776 1 2 3 88 2R 16359763 16359781 TACACTCATTCCCGTTAGC 59 16359833 16361278 AACTGAGCTCAGTCTTCTG 58 NA Drosophila melanogaster 50 CG8920 FBgn0027529 FBtr0086280,FBtr0086281,FBtr0086279 1 3 3 92 2R 16211678 16211696 TCATATGCTTCATCGCCTG 59 16211820 16211838 TTTACCAGAGGCTTACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11099 FBgn0034485 FBtr0086315 2 1 1 66 2R 16125484 16125504 TCGTACTACTTCATGGTTGTG 59 16125786 16125804 AGAAGTTGCAGGTGAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 hrg FBgn0015949 FBtr0111010,FBtr0086484,FBtr0086483 3 3 3 89 2R 15554704 15554782 AAGATTTCAAGTCTGGGATCC 59 15554635 15554654 GAATTCTGTTGTGGGTATGC 59 NA Drosophila melanogaster 50 Spt5 FBgn0040273 FBtr0086531,FBtr0086532 3 2 2 81 2R 15328659 15328736 TGGATACAATCCAAGTACCC 58 15328780 15328798 GTCCGATCCATACAGAGTG 59 NA Drosophila melanogaster 50 CG10737 FBgn0034420 FBtr0086588,FBtr0086585,FBtr0086586 3 3 5 80 2R 15064177 15064195 GATTAGTCACAAGCAGTGC 58 15064238 15064454 AATGACGTTAGTTCCATGGA 59 NA Drosophila melanogaster 50 CG15116 FBgn0034415 FBtr0086596 2 1 1 60 2R 14943007 14943025 AGGAAATGTTGGATCACCT 58 14942965 14942983 ATCTTGGCAAAGAGGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15100 FBgn0034401 FBtr0086627 2 1 1 108 2R 14735331 14735409 CTCAATGCTGAGAAACCAC 58 14735241 14735259 TAAGTTCGTCGATGAAGGA 58 NA Drosophila melanogaster 50 l(2)03709 FBgn0010551 FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616 2 6 6 192 2R 14707870 14707888 GATGATCAACATCTCGCTG 58 14708044 14708124 GATGAGTAGGGATACCTGC 58 NA Drosophila melanogaster 50 CG5757 FBgn0034299 FBtr0086787 1 1 1 118 2R 13981761 13981779 TTTGATTGGTGCTATGCTC 58 13981596 13981679 TTCTCATAACGCTCTTTGC 58 NA Drosophila melanogaster 50 CG14482 FBgn0034245 FBtr0086905 2 1 1 61 2R 13459966 13459984 TGCTTTACTACACCGACTG 59 13459923 13459942 GAACTTGGATCCGTAGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4844 FBgn0061354 FBtr0100122 3 1 2 217 2R 13394200 13394218 AATCCGATTTCGATTCCCA 59 13395097 13395115 AATCATCGATCAGTCGGTG 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 mbl FBgn0053197 FBtr0086992 3 1 4 149 2R 13239671 13239689 CGTACAGTCCGTACTACAC 59 13239801 13246820 GAGGTGAGGTCTCTAATCTG 58 NA Drosophila melanogaster 50 CG30460 FBgn0050460 FBtr0087011,FBtr0087010,FBtr0113378 2 3 5 93 2R 12959002 12959242 CACAGTGATAACACTCAAGC 58 12958928 12958946 ACAGGTTCACTTGGTTCTG 59 NA Drosophila melanogaster 50 unc-104 FBgn0034155 FBtr0113088,FBtr0113087,FBtr0087079,FBtr0113089 2 4 4 80 2R 12650303 12650322 CCATGATATGCAAGGATCTG 58 12650186 12650261 TATAGGAAACCTCAACCGAG 58 NA Drosophila melanogaster 50 Nach FBgn0024319 FBtr0089587,FBtr0089588,FBtr0087116 2 3 3 84 2R 12541208 12541228 GTGAACACATTGATTACGACG 59 12541078 12541164 AAGCCCGAATAGAACTTATCG 59 NA Drosophila melanogaster 50 CG7848 FBgn0034127 FBtr0087160 3 1 1 60 2R 12322919 12322938 TTACCAATAACGTGCAACAG 58 12322878 12322896 AATCGCCTATTTCGACGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30095 FBgn0050095 FBtr0087224 1 1 1 147 2R 12011642 12011660 CATGAAATACCGGGTTGAC 58 12011833 12011851 TTCCACTTCAACATCTGTG 57 NA DesignNoJunction Drosophila melanogaster 50 Rho1 FBgn0014020 FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216 2 7 7 82 2R 11993293 11993373 CACAATTCGGGATCTAGCA 59 11993419 11993437 AGGCATTAATCTTCTCGGC 59 NA Drosophila melanogaster 50 Flo FBgn0024754 FBtr0087352,FBtr0087351 1 2 2 201 2R 11454666 11454755 CTGAATCGATCAGGATTCGT 59 11454423 11454441 ATCGTGATCTTCTTAGCCT 57 NA DesignRelaxed Drosophila melanogaster 50 Arf51F FBgn0013750 FBtr0087377,FBtr0087375,FBtr0087379,FBtr0087376,FBtr0087378 1 5 5 90 2R 11211571 11211592 GAGCTGCATAGGATAATTAACG 59 11211643 11211715 GTTTCATTGCATCAGGCAG 59 NA Drosophila melanogaster 50 alphaPS4 FBgn0034005 FBtr0087371 2 1 1 81 2R 11148510 11148530 CTAAATTTACACCCATAGCCC 58 11148573 11148650 CAATCCTCGCAGAAATCTC 58 NA Drosophila melanogaster 50 CG8092 FBgn0033998 FBtr0087402 1 1 2 80 2R 11098564 11099091 CTCAAGAAACCTATCAACGA 57 11098503 11098522 TGATGCTATATCACGATCCT 57 NA Drosophila melanogaster 50 CG17034 FBgn0033837 FBtr0087707 2 1 4 80 2R 9310224 9326124 CTCCTGAATACCTATGACGA 58 9310163 9310183 TAGGTTTATGATACGCCTCTC 58 NA Drosophila melanogaster 50 CG33470 FBgn0053470 FBtr0087657,FBtr0087656 1 2 2 65 2R 9299575 9299593 CAACACGTTTGTTAACCGA 58 9299681 9299699 AAATTGGGACCACTGATGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 TppII FBgn0020370 FBtr0087775,FBtr0087774 1 2 2 80 2R 9042478 9042562 TTAAAGTTAAGTCTGGCAGG 57 9042417 9042435 TGTACTTCAGGTGACTCTG 58 NA Drosophila melanogaster 50 Roc2 FBgn0044020 FBtr0088085 2 1 1 208 2R 7565899 7565917 AATCTCATTAGCCCAGTGG 59 7540587 7565727 ATCCATAACTTGAACACGG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG11883 FBgn0033538 FBtr0088284,FBtr0113063,FBtr0088283 1 3 3 90 2R 6527408 6527427 AATCATACAAGTTGTGCGTC 58 6527480 6527561 TCATCATCCATCAGCACAG 59 NA Drosophila melanogaster 50 egr FBgn0033483 FBtr0088405 3 1 2 106 2R 5970831 5970927 GGTGAATCTCTTCTTTCAGC 58 5970996 5971094 ATATCTCCATGGTAGCCCA 59 NA Drosophila melanogaster 50 CG12134 FBgn0033471 FBtr0088388 3 1 2 258 2R 5859780 5859798 ATTTCAAGAGCTACGAGTG 57 5860077 5860095 CTATCTCTGACGATCTGCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 2 9 9 91 2R 5738884 5738970 GAAGCCGTTAAGGAGATCC 59 5738811 5738829 ATATCGATGACAGTTCCGG 58 NA Drosophila melanogaster 50 Map60 FBgn0010342 FBtr0088530 1 1 1 60 2R 5479668 5479687 GAATGACATTATCTTCGGGC 58 5479709 5479728 GATAATCTCGGGTGTATTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1968 FBgn0033401 FBtr0088595,FBtr0088596 2 2 2 210 2R 5175120 5175193 CGGTGCTATTCAAATACGT 57 5175367 5175385 AGCAAAGATAGGTTCTCCT 57 NA DesignRelaxed Drosophila melanogaster 50 CG8172 FBgn0033362 FBtr0088667,FBtr0113057 1 2 3 90 2R 4898800 4898818 CATGATCTGGTCTTGTTGC 58 4896716 4898746 GTGTATTATGTCGCTCGTG 58 NA Drosophila melanogaster 50 CG14743 FBgn0033326 FBtr0088722 1 1 1 80 2R 4598789 4598966 CTAGTTGAGACTATGCTGGTG 59 4598729 4598748 CAGTAGTGACCATATTGCCA 59 NA Drosophila melanogaster 50 CG11508 FBgn0033267 FBtr0088817,FBtr0114490,FBtr0088818 1 3 3 60 2R 4017216 4017234 CAGTACGTTTAATCGCAGG 58 4017174 4017192 CACGATGAAGCTATAGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11508 FBgn0033267 FBtr0088817,FBtr0114490,FBtr0088818 2 3 3 60 2R 4017214 4017232 GTACGTTTAATCGCAGGAC 58 4017172 4017192 TTCACGATGAAGCTATAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1941 FBgn0033214 FBtr0088927 2 1 1 123 2R 3598911 3598989 ATTAGGACAGGGTCTTCGA 59 3599073 3599094 CCGTTATCCTCTTTACAAAGTC 58 NA Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012 2 6 7 107 2R 3293620 3293715 CAAATATGACTTCAAGCCAGC 59 3287508 3293552 CCGGAACTTTCAGAATTTGG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111058 3 1 60 87 2R 3230525 3230544 AATTCCGGAAACTATAGCTG 57 3219874 3230475 ATCTGGGAGGTACATTGAC 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111066,FBtr0111071 2 2 60 82 2R 3249270 3249288 GAACCAAACATCGTCTGAC 58 3237002 3249225 TACACTACCAATGGGTTCTG 59 NA Drosophila melanogaster 50 Tsp42Eq FBgn0033138 FBtr0089060 1 1 1 83 2R 2950524 2950542 CAACGAGACCATTTACGAC 58 2950276 2950478 CAGCAGTGATACTTGATCTC 57 NA Drosophila melanogaster 50 Tsp42Ei FBgn0033130 FBtr0089028 1 1 1 113 2R 2923846 2923864 TCGTGAAGTATCTGGACGA 59 2923998 2924016 TCTTTACGCTGCTGTAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3403 FBgn0033094 FBtr0086141 1 1 1 87 2R 2583397 2583415 ACAAGTACTTCCCTAGCAG 58 2583268 2583286 GAGAAGATGCGATACACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7843 FBgn0033062 FBtr0086021,FBtr0086020,FBtr0086018 2 3 3 166 2R 1969443 1969461 CTCTAAGCGTCCAGAATCG 59 1968904 1969243 GTTCCAAAGGCAATTCTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14471 FBgn0033049 FBtr0085970 1 1 1 60 2R 1885598 1885616 ACACCTATATCCTGATGCC 58 1885640 1885658 TTCACTACACCTGCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Src42A FBgn0004603 FBtr0085968,FBtr0085967 2 2 2 81 2R 1896789 1896807 TACGGTTAAGCATTATCGC 57 1896852 1896937 CTGAAGGGTTCTGAATGTC 57 NA Drosophila melanogaster 50 CG34200 FBgn0085229 FBtr0112393 3 1 1 168 2R 1645270 1645289 TGGTAAAGTCTTCAAATCCC 57 1645505 1645523 TGGTAGTACTCTTAGGCTG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 snRNA:U3:22A FBgn0003926 FBtr0077928 2 1 1 184 2L 1432724 1432742 GTATCATCCTTCTCACCGG 59 1432890 1432908 TAGCAGAACACCAGAAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycK FBgn0025674 FBtr0085942,FBtr0085941 3 2 2 60 2L 22129323 22129341 TGCAGACCATCAAATTCGA 59 22129281 22129300 GCGTACTTTAGGAGAAAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cul-2 FBgn0032956 FBtr0085900,FBtr0085899 2 2 2 88 2L 21661187 21661352 TCAATCGTTTGAAGCAAGC 59 21661402 21661422 GTTCAGATCTACTGATACCGA 58 NA Drosophila melanogaster 50 CG9270 FBgn0032908 FBtr0081436,FBtr0081435 2 2 2 91 2L 20930076 20930152 CTTAGAAGAGGTGCACCTC 59 20930003 20930022 CTACACTGTAGTTGGATCCG 59 NA Drosophila melanogaster 50 CheB38c FBgn0032888 FBtr0081452 2 1 1 85 2L 20820404 20820422 GATCCAAGAGAAGTGCCTC 59 20820276 20820295 CCAACACGTTATTTAGTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9323 FBgn0032883 FBtr0081459 1 1 1 83 2L 20754742 20754818 AGTTGATCAAAGCCATCGA 59 20754677 20754695 TGTCATCGATTTCATCGGA 58 NA Nonspecific Drosophila melanogaster 50 CG1962 FBgn0032876 FBtr0081399,FBtr0081400,FBtr0081401 2 3 3 60 2L 20680493 20680512 TAGTGGTGCGGATTATAAGG 58 20680452 20680470 GCTAGAGTTGGGATTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1962 FBgn0032876 FBtr0081399,FBtr0081400,FBtr0081401 3 3 3 60 2L 20680493 20680511 AGTGGTGCGGATTATAAGG 59 20680451 20680469 CGCTAGAGTTGGGATTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15130 FBgn0032860 FBtr0081366 1 1 1 61 2L 20424459 20424477 CATAGCTGTAGCTTCGGTC 59 20424416 20424434 ATACCATAATCACTGCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rtGEF FBgn0015803 FBtr0081357,FBtr0112885,FBtr0081356,FBtr0112884 1 4 4 80 2L 20355990 20356089 ATACTGGATAAGTACAAGGACG 59 20356130 20356148 CGTGAGCACAAGTAATCCA 59 NA Drosophila melanogaster 50 spir FBgn0003475 FBtr0081355,FBtr0081353,FBtr0081352 1 3 4 188 2L 20346236 20346319 TATACCAAGATGCGAATTCCC 59 20346469 20346487 AAGACGCTCTATCAACGAC 59 NA Drosophila melanogaster 50 CG10462 FBgn0032815 FBtr0100351,FBtr0100352,FBtr0081325 2 3 3 91 2L 19733222 19733240 GACAAACGTTTCCGAACTC 59 19733056 19733168 TCTAACGAGCATATCTTGCA 58 NA Drosophila melanogaster 50 CG13077 FBgn0032810 FBtr0081257 3 1 1 292 2L 19566370 19566391 TATATTTCCTATCTCACGCTGC 59 19566995 19567013 AGAATGCACAGTACGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10195 FBgn0032787 FBtr0081286 3 1 1 124 2L 19483516 19483534 CGTATCAATCCCTGTTGGA 59 19483346 19483429 AACATAGAAGTCATCGCCAG 59 NA Drosophila melanogaster 50 Pax FBgn0041789 FBtr0081213,FBtr0081212,FBtr0081210 3 3 6 179 2L 19410626 19416414 GATGCTCTATTAGCCGACC 59 19410399 19410484 GTAGTGCTCTTGATACACCT 58 NA Drosophila melanogaster 50 CG10702 FBgn0032752 FBtr0081175,FBtr0081176,FBtr0081174 2 3 3 81 2L 19067507 19067579 AAGGACAAGTACGTCATGG 59 19067444 19067462 CGGAAATAACATAGCCGTG 58 NA Drosophila melanogaster 50 CG31752 FBgn0051752 FBtr0081119 1 1 1 60 2L 18840042 18840060 CGCATGTATCTGAACACTC 58 18840000 18840019 GGACCGTAACTAGATACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17322 FBgn0027070 FBtr0081107,FBtr0081105,FBtr0081108,FBtr0081106 2 4 4 127 2L 18827246 18827517 CTATTAGCTTAGAGGACTTCGA 58 18827605 18827623 GATCTCAGTTAGGGCTCTG 58 NA Drosophila melanogaster 50 ham FBgn0045852 FBtr0081123 2 1 1 87 2L 18776364 18776479 CTGGTTATCTGTGGTACGA 58 18776295 18776313 AGTTGAACAGGACTCTTGG 59 NA Drosophila melanogaster 50 Faf FBgn0025608 FBtr0081126 1 1 1 80 2L 18706847 18706865 GCAGTTGTATTCAAGCTGC 59 18706728 18706803 GTGATAAACGTCAAGCACC 59 NA Nonspecific Drosophila melanogaster 50 CG15149 FBgn0032659 FBtr0081027 2 1 1 60 2L 18008646 18008665 CGTGGTACAAAGTATTGGAG 58 18008687 18008706 AAACTTAGGAAGCAATGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6870 FBgn0032652 FBtr0080989 3 1 1 65 2L 17591903 17591921 ATAGGGTCTACGATGTGAC 57 17591856 17591874 GATCCATAATGACGTCGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31739 FBgn0051739 FBtr0080919 3 1 1 164 2L 16827876 16828057 AAATCCTTTCAACATGGGTG 58 16828182 16828202 GACAGCTCAACAAATAATCCG 59 NA Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080898,FBtr0080903,FBtr0080900 3 3 13 99 2L 16779120 16779138 CAAGGGTATTGAGGATCCC 59 16779199 16780558 GAAGAACACCTTTGTGTTACC 59 NA Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080903,FBtr0080902,FBtr0080899 1 3 13 95 2L 16774778 16774797 GTAACGAGACTCTGGATACC 58 16774855 16776278 GTTCGAAACCGTTGTACTC 58 NA Drosophila melanogaster 50 trpgamma FBgn0032593 FBtr0080946,FBtr0080945,FBtr0114470 1 3 3 80 2L 16665213 16665232 CGAGCAAGAATATTTGTCCG 59 16665101 16665173 GCTTAAGGGTCTTATCATTCAG 58 NA Drosophila melanogaster 50 CG13258 FBgn0032582 FBtr0080853 3 1 1 75 2L 16292364 16292382 GATATGCCAACTGATGTCC 57 16292307 16292326 CGATGACTCCAGATAATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gli FBgn0001987 FBtr0080769,FBtr0080765,FBtr0080768,FBtr0080767 1 4 5 80 2L 15760339 15760416 CGATCCGGATTACAGAACC 59 15760277 15760295 GGATAGTTGGCTCCATAGC 59 NA Drosophila melanogaster 50 Gli FBgn0001987 FBtr0080769,FBtr0080765,FBtr0080768,FBtr0080767 1 4 5 80 2L 15760339 15760416 CGATCCGGATTACAGAACC 59 15760277 15760295 GGATAGTTGGCTCCATAGC 59 NA Drosophila melanogaster 50 CG9263 FBgn0032530 FBtr0080515 2 1 1 61 2L 13542197 13542215 ATTGGTACGGATGGATGTC 59 13541966 13541984 GATCTCAACATCGTCTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16956 FBgn0032523 FBtr0080520 3 1 1 60 2L 13413924 13413943 GTACCACGACATCATTACCA 59 13413883 13413901 TAAACCAACTCATGTGTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6523 FBgn0032509 FBtr0080465 2 1 1 100 2L 13366990 13367008 GATATTCATGAAGGGCGAC 58 13367135 13367153 TGTCAAATGTCTCGTACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9377 FBgn0032507 FBtr0080474 3 1 1 61 2L 13360380 13360398 GCTGGCTCCTAATGTACAG 59 13360337 13360358 GGCTGTAGTTGTACATTATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5705 FBgn0032486 FBtr0080444 2 1 1 60 2L 13221164 13221185 AGTGGACTAATAGAGAAGTTGC 59 13221206 13221224 CCAAGAGCTCCTTTAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bun FBgn0010460 FBtr0111002 3 1 6 158 2L 12491764 12491782 TGAATCCCTATCAAACGCC 59 12458211 12477120 ACTTGACCAGATCCATTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG14945 FBgn0032402 FBtr0080295,FBtr0080294 2 2 2 162 2L 12051362 12051381 GTCAATGACTTCGATGTGTC 58 12051574 12051595 CCAGTTCATTTCGATACAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 Rh5 FBgn0014019 FBtr0080291 3 1 1 73 2L 12009054 12009072 TGCCATTGTTCCAGATCTG 59 12009159 12009177 GGTCAGGTAATCGAAGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32830 FBgn0052830 FBtr0080205 2 1 1 63 2L 11255924 11255943 ATTTCCTTGACCATGAAGAG 57 11255969 11255987 TGAGTAGCGTTTGGTAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33129 FBgn0053129 FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172 2 4 4 117 2L 10966083 10966101 GATCAAGACCACCTGTGAC 59 10965902 10966002 TTGGTCAATGAACTTTGCC 58 NA DesignRelaxed Drosophila melanogaster 50 Myo31DF FBgn0086347 FBtr0080035,FBtr0080036 2 2 2 101 2L 10494501 10494520 TGGATATTTACGGCTTCGAG 59 10494359 10494440 GCACCAGTTCTATGAATAACTG 59 NA Drosophila melanogaster 50 CG5188 FBgn0032247 FBtr0080024 1 1 1 66 2L 10429617 10429635 ATCGGTAGCTATTTCCACG 59 10429720 10429738 GCATCTTTCCAGGAATCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG31718 FBgn0051718 FBtr0080015 2 1 1 119 2L 10407547 10407565 AACGAGATCTGTGATCTGC 59 10407648 10407861 CTGGGCATTACACATAGCT 59 NA Drosophila melanogaster 50 CG5640 FBgn0032207 FBtr0080075 2 1 3 98 2L 10277916 10278259 TACTCCGAAGCTTTATCAGC 59 10277837 10277855 ATAAGCAACGCCTATTCCA 59 NA Drosophila melanogaster 50 Eaat1 FBgn0026439 FBtr0079802,FBtr0079801,FBtr0079800 3 3 3 147 2L 9338300 9338321 AGATCATGTACATATCCTTCCC 58 9338514 9338599 TAAGTAATGGCTCTGGTAGC 58 NA Drosophila melanogaster 50 CG32984 FBgn0052984 FBtr0079758 3 1 1 110 2L 8965699 8965781 ATGGGCTATAATAAGGTAGCTG 59 8965852 8965870 TCCTGGTTGAGTTGTATCG 58 NA Drosophila melanogaster 50 d FBgn0086896 FBtr0079680,FBtr0079678,FBtr0079679 1 3 3 116 2L 8483309 8483327 TTTGACCTAAACGCATCCA 59 8483407 8483574 GCTGTGATTCTTCGATGTC 58 NA Drosophila melanogaster 50 emb FBgn0020497 FBtr0079663 2 1 1 81 2L 8406841 8406927 CTGCTAGATTATCAGCGCT 59 8406971 8406990 GTTTATGCACAATGATTGCC 58 NA Drosophila melanogaster 50 CG8486 FBgn0031993 FBtr0079583,FBtr0110893,FBtr0079582 3 3 3 81 2L 8188866 8188939 GACATTTATCTGGTACGGGA 58 8188983 8189001 GCGATCGGTATAGGAAGAG 59 NA Drosophila melanogaster 50 ninaC FBgn0002938 FBtr0079436 2 1 2 80 2L 7383687 7383706 CAAAGATCCTCGTATCCTCC 59 7383748 7383818 ATCCTCAGAGTTATCACCCT 59 NA Drosophila melanogaster 50 CG13784 FBgn0031897 FBtr0110799 1 1 2 80 2L 7208574 7209360 ACTATCTCAATGACCTGGAC 58 7208513 7208531 ACACGACTAGCATGAAGTC 59 NA Drosophila melanogaster 50 sip2 FBgn0031878 FBtr0079360,FBtr0079357,FBtr0079359,FBtr0079358 3 4 5 86 2L 6961943 6961961 CAATGGAATCGATTCAGCC 58 6961811 6961829 GGAGTTCGTTCATCAACCA 59 NA DesignNoJunction Drosophila melanogaster 50 Oscillin FBgn0031717 FBtr0079102,FBtr0079101 1 2 2 152 2L 5548088 5548173 GATGAGTATGTGGGACTGG 59 5548289 5548307 CTCGAACTTATTGCACTCG 58 NA Drosophila melanogaster 50 Cyp28d1 FBgn0031689 FBtr0079062 3 1 1 106 2L 5210793 5210814 CAGAATTCCACAACTAATGGTC 59 5210881 5210963 TGCTGTCGGTAAACTTAGC 59 NA Drosophila melanogaster 50 CG2837 FBgn0031646 FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403 2 4 4 164 2L 4904903 4904923 GTTTACTCCAATATACCACCG 58 4904700 4904721 CTTGTTGAACGATTGATCATCC 59 NA DesignNoJunction Drosophila melanogaster 50 mRpL27 FBgn0053002 FBtr0077451 3 1 1 269 2L 4459374 4459392 TACGAGGAATAAGAAGGGC 58 4459065 4459084 TTCTTGTAGATGTTCTGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17612 FBgn0031597 FBtr0077464,FBtr0077463 3 2 2 60 2L 4382273 4382291 GCAAATAACGACGTGATCC 59 4382231 4382251 GATCCTCAAGAATTACCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Traf1 FBgn0026319 FBtr0077429,FBtr0077430,FBtr0112925 3 3 3 71 2L 4379579 4379597 AGATCCAGATGCTCAAGTC 58 4379631 4379650 TGATCTTCCACAACAGAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k16918 FBgn0021800 FBtr0077497,FBtr0077498 3 2 2 99 2L 3807043 3807139 GGATATGGAAACTAGTGTTGC 58 3807200 3807218 CTGGTCGTACATGAGATGG 59 NA Drosophila melanogaster 50 Dot FBgn0015663 FBtr0077532 1 1 1 60 2L 3620690 3620709 CCTAAAGAAAGCTCTTGCAG 58 3620788 3620806 GACCTCAAGAGATCGTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 NTPase FBgn0024947 FBtr0077680,FBtr0077683,FBtr0077681 2 3 4 142 2L 2882504 2882702 CTTTGTCTTTGGCTTCGTC 59 2882380 2882398 GATTGAACTTGTAGGCCAG 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 syt FBgn0004242 FBtr0077727,FBtr0077728 3 2 4 81 2L 2793377 2793395 ATGGAAAGGGTAAGAAGGG 58 2793251 2793333 TCCTCCATATCAGGTTTCTC 58 NA Drosophila melanogaster 50 CG15395 FBgn0031440 FBtr0114513 2 1 1 97 2L 2610653 2610672 CCAATGTGCTCAAGAATTCG 59 2610732 2610750 TTTGTGAAGTTGGGACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11617 FBgn0031232 FBtr0078146 2 1 1 61 2L 205204 205281 ATATGACCAGGCAGAAAGC 59 205161 205179 ATCTGTGGTAAAGATCGCT 58 NA DesignRelaxed Drosophila melanogaster 50 l(2)gl FBgn0002121 FBtr0078171,FBtr0078170 1 2 6 135 2L 15703 17062 TTATCGTAAGACGGCACAG 59 15586 15604 GTACAATTCAACTCCGGGT 59 NA Drosophila melanogaster 50 CG32500 FBgn0052500 FBtr0077374 1 1 2 102 X 21494389 21494407 GGAGAGCTTGAAGTTCCTG 59 21493238 21494323 CAATTTGGCCAAAGGACTG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG12433 FBgn0030811 FBtr0074379 1 1 1 60 X 16917251 16917272 GAGGATTACGATGCTAAATTGC 59 16917292 16917646 TATTTCGCTCGATCTCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9066 FBgn0030703 FBtr0074166 1 1 1 137 X 15782301 15782394 GGGAAATGCAGTTTAAGGA 57 15782182 15782200 ACTTGGGTAGGTTCTTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5877 FBgn0030625 FBtr0074002,FBtr0074001 3 2 2 60 X 15189828 15189849 CTGAATAATCGTCGTCATAAGG 58 15189870 15189888 ATTCGTTATTCTGCAGGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Flo-2 FBgn0024753 FBtr0073952,FBtr0073950,FBtr0073951,FBtr0073949 2 4 6 129 X 14820900 14824791 CATATTGGGAACGCTTACAG 58 14824883 14824901 GTCCTTGATCGTAAACGAG 57 NA Drosophila melanogaster 50 CG12096 FBgn0030457 FBtr0073727 1 1 1 113 X 13054955 13054973 TTAAGAAGTATGGCTCGCA 58 13055050 13055124 TAATGATTTCTGTGGCAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2989 FBgn0030171 FBtr0071416,FBtr0112972 1 2 2 120 X 9924356 9924450 CATAAATGAAGCCAGCAGC 59 9924532 9924552 CAAATGTGTACACAGGTATGG 58 NA Drosophila melanogaster 50 CG3044 FBgn0029913 FBtr0071041 3 1 1 93 X 6742653 6742671 CAATTACACGGTTCAGTGG 58 6742513 6742596 AACCAACGTAAATGAGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubi-p5E FBgn0086558 FBtr0070933 2 1 1 116 X 6172016 6172034 ACCATTGAGAACGTTAAGG 57 6171918 6171936 GTTGTAGTCGGACAAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40972 FBgn0085548 FBtr0113961 1 1 1 61 U 9895878 9895896 GTGTAATCGTGCTAGTGTG 58 9895708 9895853 CTGACGAAATGCTGTACCA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40195 FBgn0058195 FBtr0113828 1 1 1 71 U 1047532 1047618 AAGAACAATAACGGCAGTG 58 1047479 1047500 GGATTTGTTTCTCCAAACTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131 1 5 5 80 4 369769 369856 TTCACTATGATATCACAGGTGC 59 369710 369730 CCACTGATCCAATGTTAAAGC 59 NA Drosophila melanogaster 50 CG2218 FBgn0039767 FBtr0085627 2 1 1 150 3R 26252986 26253004 GAGATAAGCGATCCCTACG 59 26252533 26252872 AGATCATTAGCTCCCAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spn-A FBgn0003479 FBtr0085589,FBtr0085590 1 2 2 69 3R 25881634 25881652 CTAACGAATGTTCAGGCAC 58 25881520 25881604 CTATTAACTTAGTCACGCTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3339 FBgn0039510 FBtr0110855,FBtr0085171 1 2 2 85 3R 23140138 23140156 GACTCCTTAATCTGGCCTG 59 23140009 23140091 ATTCAACTCCTTCAGAGTTCC 59 NA Drosophila melanogaster 50 Sld5 FBgn0039403 FBtr0084975 2 1 1 235 3R 21881684 21881702 ACTTCCACAAAGTAGCCAC 59 21881409 21881427 TTAAATTAGCTGCGCTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4813 FBgn0039013 FBtr0084326 2 1 1 72 3R 18551260 18551278 CATCTATGGTCCTACGCAG 59 18551206 18551224 AACATTTCCCTCTGTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4907 FBgn0039010 FBtr0084330 1 1 1 103 3R 18535766 18535784 TAAACTACACCCAACGTGG 59 18535623 18535699 ACTTATCCCATAATCCGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6560 FBgn0038916 FBtr0084151 1 1 1 67 3R 17712055 17712073 AGGATTGGATAATGCTGGC 59 17711943 17712024 TTACCGTGGTTATGTCCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31465 FBgn0051465 FBtr0084147 3 1 1 93 3R 17708829 17708847 CAATCAATCGTCGGAAGAG 58 17708961 17708979 CCAGGATCCGTTTAGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Obp93a FBgn0038859 FBtr0084030 1 1 2 82 3R 16955075 16955160 CTTTGCATGCATGTATTGC 58 16955011 16955030 CAATGCCTGGGTATTAACAG 58 NA Drosophila melanogaster 50 CG34282 FBgn0085311 FBtr0112478 2 1 1 83 3R 14520994 14521081 AAGGTTTCGATCATCTGCT 58 14521128 14521146 CTCGGCATAGATGTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gl FBgn0004618 FBtr0083585,FBtr0083584 1 2 2 60 3R 14197167 14197470 CTGAACACAATTCTGGATTCC 59 14197127 14197146 CGCACGATATGTACATAGCT 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG18598 FBgn0038589 FBtr0083569 2 1 1 119 3R 14076899 14076917 GGTTTGGACAACTACAAGG 58 14077000 14077083 CTTGTCCTTTAGCAGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12347 FBgn0038558 FBtr0083519 1 1 1 60 3R 13732408 13732428 GGAATATCTTCATGACCACCT 59 13732447 13732468 CTGAATCCTGCAAAGTATTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18213 FBgn0038470 FBtr0083429 1 1 1 87 3R 12865224 12865309 ATAACCAGAATACGACCGC 59 12865155 12865173 GAGATTATCGTTCCCTCCG 59 NA Drosophila melanogaster 50 Actn3 FBgn0015008 FBtr0083380 3 1 1 60 3R 12803161 12803234 TCTGTTACGATGTACTCGG 58 12803119 12803138 AGTCTCAAGTAGTGTCAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31388 FBgn0051388 FBtr0082356 2 1 1 124 3R 7064216 7064234 GATAATCGGGACACTTCCT 58 7064321 7064687 CAGACGAATTTGGTATCTGG 58 NA Drosophila melanogaster 50 CG8369 FBgn0040532 FBtr0081920 3 1 1 72 3R 4648386 4648461 ATCCATTCGAGCAGAAGTC 59 4648495 4648515 AAATTGGACTTCTAGGACAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG2993 FBgn0037521 FBtr0081771 1 1 1 151 3R 3633480 3633704 ATTTACAGGGTTCCTCTGG 58 3633347 3633366 GACTCGTTGTTGATGTACAG 58 NA Drosophila melanogaster 50 CG10053 FBgn0037490 FBtr0081576 1 1 1 177 3R 3073004 3073091 CAAATTCCTGGTTGGTCTG 58 3073232 3073250 AATTGGTTTGTTGAGGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14450 FBgn0037184 FBtr0078537 3 1 1 101 3L 22720560 22720632 ACTACGACATAACCAAGGC 59 22720477 22720495 CGAATCCCTCCACATACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7202 FBgn0037086 FBtr0078393 1 1 1 116 3L 21485774 21485792 AAGTTTCTTGTTCCTGGCT 59 21485287 21485696 TCTGTGTATAATTCGACTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7017 FBgn0036951 FBtr0074856 3 1 1 75 3L 20204842 20205131 GAATAGAGCTAGCGGTGTC 59 20204785 20204805 GTATTCAAAGTCCTCGATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 825-Oak FBgn0052208 FBtr0074985 1 1 1 60 3L 19465305 19465323 AGAGTTTCTAGCCTTCCGA 59 19465204 19465281 AGCGTATTTGAACATGGTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 nes FBgn0026630 FBtr0075021,FBtr0075020,FBtr0075019 2 3 3 77 3L 19251448 19251640 CAAATAACCCGCTTCTACAC 58 19251390 19251408 CAGCTTGTAGATGTCCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7945 FBgn0036505 FBtr0075599 1 1 3 101 3L 15516656 15516674 GTCCAATGATGGCTTTGAC 59 15515585 15515662 TCCAGTATGGTGACAAATCTC 59 NA Drosophila melanogaster 50 CG17826 FBgn0036227 FBtr0076042 2 1 1 60 3L 11942985 11943064 AGAACTAAACACTATGGAGTGG 59 11943084 11943103 TTGACGATCCCATAAAGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 simj FBgn0010762 FBtr0076262,FBtr0076264,FBtr0076263 1 3 3 80 3L 10680191 10680210 AGCAATTCTGTTTCCATCAC 58 10680253 10680346 GCGATCATTCTTCTGATCG 58 NA Drosophila melanogaster 50 CG8065 FBgn0036075 FBtr0076296 2 1 1 238 3L 10209382 10209460 TTCTGTTTCGCATCAAAGG 58 10210143 10210162 ATTTCATCAGATCGGAACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12262 FBgn0035811 FBtr0076808 3 1 1 109 3L 7713425 7713443 ATCTCGATGTGTTCACCAC 59 7713516 7713594 CAGGATCACAGGAGTTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 bin FBgn0045759 FBtr0076900 2 1 1 194 3L 6986052 6986142 GGACAATGGCAACTATTACG 58 6986297 6986317 CAGGATATGTTCGTATACTGG 57 NA DesignNoJunction Drosophila melanogaster 50 ple FBgn0005626 FBtr0076957,FBtr0076956 2 2 2 166 3L 6709238 6709257 TTAACTCACCATACCACACC 59 6708457 6708814 GAACCAGTATACCGTGGAC 59 NA Drosophila melanogaster 50 CG32846 FBgn0052846 FBtr0073009 1 1 1 86 3L 2951313 2951333 GCCTGTGGAAATATCTTATCG 58 2951184 2951265 CATACCAGAAGCATTGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16758 FBgn0035348 FBtr0072966,FBtr0072964,FBtr0072963,FBtr0072965 2 4 4 168 3L 2499617 2499702 AACCACGATGAGGTTATGG 59 2499467 2499485 CTTAGATGCGAGCTCAGAG 59 NA InUTR Drosophila melanogaster 50 CG17090 FBgn0035142 FBtr0072552,FBtr0072551 1 2 2 104 3L 569806 569887 CGGAATATGAGGTCCTTGAG 59 569954 569972 TCTTCAGGATCTTGATGGC 59 NA Drosophila melanogaster 50 Lsp1gamma FBgn0002564 FBtr0072463 1 1 1 60 3L 66669 66688 AGGAATGGATTAAGATGGGC 59 66711 66794 TCGAAGGTCTCGTATTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 IFa FBgn0053527 FBtr0091490 3 1 1 123 2R 20465423 20465441 GTATCCCGTTAAAGCCTCC 59 20465318 20465336 CCTATTTGCTGTCGTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9897 FBgn0034807 FBtr0071989 3 1 1 94 2R 18873370 18873446 GATAATTCTCGAGCCAATAGGA 59 18873297 18873315 CTAAGGATCCGCACTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pu FBgn0003162 FBtr0071578,FBtr0071580,FBtr0071579 1 3 3 81 2R 17069023 17069041 TTCTACGGCAAAGTTTCCA 59 17069086 17069163 ATATTTCGACAATGCGTGC 59 NA Drosophila melanogaster 50 mRpL54 FBgn0034579 FBtr0071533 3 1 1 168 2R 16948710 16948788 AAATCAAACCGGATTCGGA 59 16948918 16948938 GGGTTCTAGAACTTCTTTAGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13430 FBgn0034518 FBtr0100495 3 1 2 77 2R 16439321 16439406 ATAATTTGGGTTCTGTGGC 57 16439203 16439221 AGTTCTTCAGGGTTTGGTG 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 Obp56a FBgn0034468 FBtr0086476 3 1 1 65 2R 15585278 15585296 AACTCCTACTTCGTGATCG 58 15585324 15585582 ATTAAGGGACGATCCAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18605 FBgn0034411 FBtr0086571 3 1 1 76 2R 14865375 14865395 GCCAATTCGCTATATTCTCTG 58 14865433 14865526 TTGAGACGGAAATATTCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ngp FBgn0034243 FBtr0086906 2 1 1 83 2R 13454602 13454623 CTATTCTTAGTGCCGAATATCC 58 13454482 13454558 ATAGATTGATGAGCGCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34186 FBgn0085215 FBtr0112379 2 1 1 128 2R 11032888 11032909 GCAATGACCTATATTTGTGGAG 59 11032582 11032688 ATCAAAGACAACAAGACGC 58 NA Drosophila melanogaster 50 Pcf11 FBgn0022063 FBtr0087458 1 1 1 80 2R 10752555 10752687 GGGAAAGTCTGACAAATCCA 59 10752494 10752514 GAATCGTCGTTGACTTTAAGC 59 NA Drosophila melanogaster 50 CG18324 FBgn0033905 FBtr0087523,FBtr0087524 1 2 2 68 2R 10057024 10057089 CATGATAAAGGCCCAACAG 58 10057121 10057139 GTATGCTTGTGCTGAAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr50Ca FBgn0033867 FBtr0087629 1 1 1 161 2R 9661774 9661854 TCATATGAGGACATGCAGC 59 9661979 9661997 GATCCTAGAGTGGGTTTGG 59 NA Drosophila melanogaster 50 Cpr49Ah FBgn0033731 FBtr0087924 2 1 1 166 2R 8301575 8301812 GCTCATACTTCTTGTGCTG 58 8301939 8301960 CCTTGTTGTACTTGATTATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13162 FBgn0033718 FBtr0087904 2 1 1 95 2R 8236024 8236101 TGATGAGCTACTCTCAGCA 59 8236160 8236178 TTATGTACAAGCAGTCCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr47Ea FBgn0033597 FBtr0088190 2 1 1 140 2R 7139936 7140225 TACAACTACGAGACAAGCA 58 7139728 7139746 GTAGGTGATGGTGTAGACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG8046 FBgn0033388 FBtr0088621,FBtr0088620 1 2 2 80 2R 5051521 5051597 GATCTTACAGGATGATTGCC 58 5051460 5051478 CGTATGCATAACCAGAACC 58 NA Drosophila melanogaster 50 CG8237 FBgn0033350 FBtr0088653 2 1 1 60 2R 4813722 4813743 GTTCAACATAGAGTTCGATGAG 58 4813764 4813782 AAAGAGGTCTTCTTGGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445 2 8 8 80 2L 20877198 20877217 GTTCTGCAAGAAGATACCAG 58 20877072 20877156 ATATACTGGGTACTCAGTCC 57 NA Drosophila melanogaster 50 CG31675 FBgn0051675 FBtr0081429 1 1 1 161 2L 20868507 20869117 TGAAACGGGTATTCAAGGA 58 20869242 20869260 ATCCGTTGCAGTAGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31789 FBgn0051789 FBtr0081071 2 1 1 60 2L 18606092 18606110 AGTCTCATCAGTTTCCCAC 58 18606196 18606214 TGCTAATGTACCGAATGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6860 FBgn0032633 FBtr0080969,FBtr0080968 3 2 2 84 2L 17372763 17372783 GGTTATACTGTGTCATTTGGC 59 17372634 17372717 CAACTTATTGACACCGGGA 59 NA Drosophila melanogaster 50 CG6860 FBgn0032633 FBtr0080969,FBtr0080968 1 2 2 80 2L 17372753 17372772 GTCATTTGGCCAACTATGTG 59 17372627 17372713 CCATTGTCAACTTATTGACACC 59 NA Drosophila melanogaster 50 CG6115 FBgn0040985 FBtr0080959 3 1 1 183 2L 16887665 16887798 AAGCACTTGCAGTATTTGG 58 16887500 16887518 ACTTCTTCAGCGAGTACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15279 FBgn0028886 FBtr0080686,FBtr0080685,FBtr0100264 3 3 3 82 2L 14845466 14845487 TCTGATCTATTTCTATGCGACC 59 14845350 14845424 GCCAACCAATTGAGTAAGAC 59 NA Drosophila melanogaster 50 CG6043 FBgn0032497 FBtr0089911,FBtr0089910,FBtr0114471,FBtr0113039,FBtr0113040 1 5 5 141 2L 13276279 13276383 CAACAACGATATGATGCCC 58 13276488 13276506 TTTCAGGTGTTGTCATTGC 58 NA Drosophila melanogaster 50 CG14934 FBgn0032381 FBtr0080275 3 1 1 124 2L 11848721 11848742 CATTACAAGATCTATCAGTCCC 57 11848827 11848916 TGCTCGTTCTTCAGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31870 FBgn0051870 FBtr0080137 3 1 2 136 2L 10790357 10790434 TAGGAACTATGGACCTGGA 58 10790534 10790552 CCTTATAAGCAGCAGGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4995 FBgn0032219 FBtr0079989,FBtr0079991,FBtr0079990 3 3 3 60 2L 10324293 10324381 TCTAAGGGATATTCCAGGCT 59 10324404 10324422 TTGACGCATAAGGTACTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Aats-ala FBgn0027094 FBtr0079721,FBtr0079722 2 2 2 252 2L 8380664 8380683 CGATCTAACTACGATACCGA 58 8380308 8380449 ACTTCTCAGTGGCATAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34132 FBgn0083968 FBtr0110879 3 1 1 90 2L 7885725 7885743 AATTGCTCACGCAAATGAC 59 7885796 7885887 GAAATGCATTTCTGTTCGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aru FBgn0029095 FBtr0078033,FBtr0078031,FBtr0078032 1 3 3 87 2L 862623 862641 TAAGATTGTGCTGGTCACC 59 862490 862575 ATCAAGGATCTCCAAGTATTCG 59 NA Drosophila melanogaster 50 RpS28a FBgn0039739 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG32551 FBgn0052551 FBtr0074564 2 1 1 67 X 18333922 18333941 AAAGTTCGGAGTATGGTGAC 59 18333971 18333989 GATGTTCGATGCTTGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4872 FBgn0030799 FBtr0074339 2 1 1 97 X 16776518 16776536 AAGGAGCTAGAAATCAGCA 58 16776688 16776706 TTTGCGCTAGAGATAATGC 57 NA DesignNoJunction Drosophila melanogaster 50 His3.3B FBgn0004828 FBtr0071345,FBtr0071347,FBtr0071346 2 3 3 218 X 9048446 9048464 GGATTTCAAGACCGATCTG 57 9048107 9048125 ACGACAGTGATCGAATCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297 2 4 6 118 X 9005030 9005125 CGAGCATGGATTTAATCCAG 58 9005449 9005467 GAATCTGTCGGATGAGGTC 59 NA Drosophila melanogaster 50 CG1440 FBgn0030038 FBtr0071197,FBtr0112961,FBtr0112962 3 3 3 92 X 8334503 8334584 GTATCCGTGGATAAGAGCG 59 8334640 8334658 GTTCATCACCAGATAGCCC 59 NA Drosophila melanogaster 50 fs(1)h FBgn0004656 FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119 3 5 5 119 X 7944306 7944477 CAAGAAAGATGAGTCCGCT 59 7944205 7944223 TCACTCGAACTGCTATCAC 59 NA Drosophila melanogaster 50 egh FBgn0001404 FBtr0070440,FBtr0070439 3 2 2 129 X 2491030 2491048 CAGTTATGTGGTCACCCAG 59 2491451 2491470 GATGAAGTTGAACGTGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 2 8 8 61 X 551358 551376 GGATGATGAGAGCAAGGAG 59 551401 551419 TTAGGAAATCTGCATCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3156 FBgn0023536 FBtr0070079 1 1 1 80 X 383445 383524 TTTCTTTGGATTGACTGGCT 59 383564 383585 TCTTGTAATACCAAGGTTCCTC 59 NA Drosophila melanogaster 50 Syt7 FBgn0039900 FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475 3 5 6 156 4 323148 325657 GTAGTTATAGTCTTCGGGCTG 59 323012 323033 CCAATCAAAGGAGTTCTAAGAC 58 NA Drosophila melanogaster 50 Myo95E FBgn0039157 FBtr0100517,FBtr0100518,FBtr0100519,FBtr0100520 2 4 7 116 3R 19985037 19985205 TACCCATTACCCGTATAACG 58 19984882 19984901 CATTTCGATACAGCTTGAGC 59 NA Drosophila melanogaster 50 Rpn9 FBgn0028691 FBtr0084469,FBtr0084470 1 2 2 120 3R 19557825 19557843 TTCTTGAGTCGCTTAAGGG 59 19557662 19557680 AAATCGGGAATCTTGGACC 59 NA DesignNoJunction Drosophila melanogaster 50 Mvl FBgn0011672 FBtr0089521,FBtr0089522,FBtr0089523 3 3 3 82 3R 16882560 16883306 GGCTATGAGTACATTGTATCAG 58 16882499 16882517 GAATTGCAGTTAGAGCACC 58 NA Drosophila melanogaster 50 CG14315 FBgn0038568 FBtr0083547 2 1 1 63 3R 13984777 13984795 ATATCGTTGATGGCACTGG 59 13984822 13984840 GGTTCCTTCCATCATACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rbp4 FBgn0010258 FBtr0082853 3 1 1 100 3R 9480584 9480602 CACCCAGGACTATAAGGTC 58 9480415 9480520 CTTAGATACCGTAGGGTGG 58 NA Drosophila melanogaster 50 sim FBgn0004666 FBtr0082711,FBtr0082710 2 2 2 89 3R 8900718 8900810 GGATTTAAGGTGATACACTGC 58 8900861 8900879 GAGATTCTGGATGAGGCTG 59 NA Drosophila melanogaster 50 Ama FBgn0000071 FBtr0081619,FBtr0081620,FBtr0081618 3 3 3 65 3R 2589588 2589607 TCTTATATTCTGCCTTGCGA 58 2589635 2589653 CTGATCTGGCTGATCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6049 FBgn0037081 FBtr0078400,FBtr0078399,FBtr0078398 1 3 3 80 3L 21414146 21414217 GTTATCTATGATCGCCATCCT 59 21414086 21414105 CATTTGAATGACGAGGTCAG 58 NA Drosophila melanogaster 50 CG17145 FBgn0036953 FBtr0074823 1 1 1 62 3L 20215058 20215076 CTTCAAGGCCTAGATGTGG 59 20215102 20215120 ATTATTGGAGAACAAGCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14082 FBgn0036851 FBtr0075031,FBtr0114620 3 2 2 178 3L 19101292 19101310 CTGTACTGTGATACCCTGC 59 19101132 19101150 GACAAATTGGGTGATCCCT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13035 FBgn0036628 FBtr0075414,FBtr0075415 3 2 2 97 3L 16391793 16391813 TTGGTCATATCCTGTATTCCC 58 16391124 16391735 AAGGTGAAGTTCTTGTCCTG 59 NA Drosophila melanogaster 50 CG10943 FBgn0036320 FBtr0075936 3 1 1 60 3L 12855638 12855657 GGATAGATTTGATGCTCAGG 57 12855597 12855617 TAAGGTTGACAATTCCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076331,FBtr0076333,FBtr0076335 1 3 8 246 3L 9817658 9817676 CGATCAAATAACGAAGCCC 58 9823879 9824111 ATAAATGGGACCCTGAGGT 59 NA DesignRelaxed Drosophila melanogaster 50 Idh FBgn0001248 FBtr0114547,FBtr0076670 1 2 9 114 3L 8351125 8351143 TAATGAAAGGATGTCCGCC 59 8350919 8350937 TTGGCTCTTAATGGAGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 Lcp65Ac FBgn0020642 FBtr0076991 1 1 1 118 3L 6138330 6138348 TACACGGTCAACTACATCG 59 6138430 6138448 TACATAGAACAGCTCTCGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Ptpmeg FBgn0035133 FBtr0072545,FBtr0072542,FBtr0072544,FBtr0072543 3 4 4 80 3L 354436 354509 CATATCACCATATGACTGCAC 58 354551 354569 ATGTTTACGTAGTTGGCGT 59 NA Drosophila melanogaster 50 Pk61C FBgn0020386 FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466 2 8 8 87 3L 142804 142822 ATATCGCGACTGCTTAGTG 59 142873 142954 GGTCGAAAGAGTTCTTTGC 59 NA Drosophila melanogaster 50 CG4741 FBgn0035040 FBtr0072337 3 1 1 231 2R 20501686 20501706 GGATTGGGAATACGTTAACAC 59 20498783 20498801 ATTGATCTCCATTTGGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG10320 FBgn0034645 FBtr0113102,FBtr0113101 1 2 3 213 2R 17545965 17545983 ATTGAAGGATCCATGGCTG 59 17546219 17546237 CTTATCTCCGTGTTCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9754 FBgn0034617 FBtr0071615 2 1 1 60 2R 17198495 17198514 AACTCCCTGTTAATGAGTCC 59 17198454 17198473 CAAATTGGCGAAGGATTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15086 FBgn0034374 FBtr0086650,FBtr0086648 3 2 4 96 2R 14570959 14570977 TGGAAATGAATGTGGATGC 58 14570540 14570899 GAACAAGTTTGAGCTGTCC 58 NA Drosophila melanogaster 50 Dp1 FBgn0027835 FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682 3 6 6 84 2R 14304948 14304966 TCATCTCCTCGATCATGGA 59 14305013 14305092 CGAATAGTGACCTTATCGCT 59 NA Drosophila melanogaster 50 CG12821 FBgn0040780 FBtr0113332,FBtr0113331 2 2 2 84 2R 3721686 3721705 TTAGTGTGGAGTACCATGTG 59 3721751 3721827 AGACTTCCATCTGATCTGTG 58 NA Drosophila melanogaster 50 CG12822 FBgn0033229 FBtr0088842,FBtr0088841 1 2 2 158 2R 3719998 3720016 GACATTGAGACGATAACCC 57 3720138 3720215 ATAATTGCTCTGACCTTGG 57 NA Nonspecific Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111094 2 1 60 97 2R 3236476 3243419 GTGCCCGTTTATAGATGGT 59 3236397 3236415 ATGAGAGTACCAGAGACCT 58 NA Drosophila melanogaster 50 Eb1 FBgn0027066 FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130 3 5 5 160 2R 2642342 2642416 CAAATCAGGTGATGGATATGC 59 2642600 2642619 AGTCGCATATAAGATGTCCA 58 NA Drosophila melanogaster 50 CG17082 FBgn0039994 FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289 1 6 6 87 2R 637011 642015 TTGAACAAGGGTTAGAGGT 58 642066 642084 AGTTGTACAATCGCTTCAG 57 NA Drosophila melanogaster 50 Pax FBgn0041789 FBtr0081213,FBtr0081212,FBtr0081210 2 3 6 178 2L 19410626 19416414 GATGCTCTATTAGCCGACC 59 19410400 19410485 TAGTGCTCTTGATACACCTG 58 NA Drosophila melanogaster 50 Ca-alpha1D FBgn0001991 FBtr0090005 1 1 4 116 2L 16177203 16177224 GCATAGATATCGATATGGAGCA 59 16177384 16177686 AATTGGAGTCTTCCTCTTCC 59 NA Drosophila melanogaster 50 TepII FBgn0041182 FBtr0079511 3 1 5 101 2L 7697150 7698736 CTTACAACACTGAAAGACGA 57 7697068 7697086 TAACGTTTGGTGGTAAGGA 58 NA Drosophila melanogaster 50 CG3338 FBgn0031598 FBtr0077462 3 1 1 139 2L 4385254 4385331 CATCGAGGAAATCAAGAATCTC 58 4385136 4385154 ACTGGTTAAGACCCAAACG 59 NA DesignRelaxed Drosophila melanogaster 50 drongo FBgn0020304 FBtr0078035,FBtr0078036,FBtr0078037 1 3 3 111 2L 836547 836565 TCCCATCTACAATGCAGTG 59 835456 835474 CTTAAGAGCGGCATATCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG4297 FBgn0031258 FBtr0078085,FBtr0078086 1 2 2 60 2L 460660 460678 ATGATGAGAAGCCTGATCC 58 460618 460637 TTCCCATGCAGATATTTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32528 FBgn0052528 FBtr0074793 2 1 1 139 X 19640341 19640691 AGTGAAGAAGGTCCAAGAG 58 19640873 19640891 GATCACTGATGGACTGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 140up FBgn0010340 FBtr0082909 2 1 1 74 3R 9950582 9950662 TTACCACATCCTACTTCGG 58 9950526 9950547 CCAAGTATTCGTAGATTGAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG11000 FBgn0037380 FBtr0113195 2 1 1 119 3R 1631989 1632737 AAAGCAAATGTTCTGGAACC 59 1632819 1632837 TCCTTTACCAGGATCTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 Itp-r83A FBgn0010051 FBtr0078687,FBtr0078686 1 2 2 80 3R 1356643 1356718 CCATACAGGACTACGATGG 58 1356760 1356780 CGATGGTTGTATTGAACTTGG 59 NA Drosophila melanogaster 50 PGRP-LA FBgn0035975 FBtr0076434,FBtr0076432,FBtr0076435,FBtr0076433 1 4 4 144 3L 9330633 9330651 CCTTTATGGGCGACTATGG 59 9330758 9330842 CTTCTGGTCACCTTAGTCTG 59 NA Drosophila melanogaster 50 CG34045 FBgn0054045 FBtr0100100 2 1 1 104 2R 15222293 15222484 GATGCTGTATGGCAATAAGC 59 15222551 15222569 TTTGTCGAGTTCCTAACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34007 FBgn0054007 FBtr0100062 3 1 1 96 2L 20495222 20495299 TCTATCCCAAATACGTGCTG 59 20495358 20495376 GATTGTCAGGACGAAACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13965 FBgn0032834 FBtr0081308 2 1 1 207 2L 19962205 19962283 CTGAAGCTGATTGGAATCG 58 19962016 19962035 TGCTATTAACCATATCGGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15153 FBgn0032663 FBtr0081045 3 1 1 61 2L 18091505 18091525 TATGCCCAACATGAAGTACTC 59 18091261 18091484 TGTAGCTTATCTCGTTGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2983 FBgn0031472 FBtr0077620 3 1 1 61 2L 2848444 2848521 CTACAGAACGCAAGATGGA 59 2848545 2848564 GAACGTAGTGAAACGATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40454 FBgn0085735 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:M-i:61D FBgn0052482 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30249 FBgn0050249 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR31885 FBgn0051885 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG13947 FBgn0031277 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Or-aca2 FBgn0082924 FBtr0113562 1 1 1 67 X 7795167 7795186 GATCAAACAAATTGCAAGCG 59 7795119 7795138 GCGGAGATAATATCATCCAC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41475 FBgn0084035 FBtr0111202 2 1 1 102 X 22261336 22264652 CGACGAAACTCTGTATTTGTG 59 22264716 22264734 ATGACAAAGAGTACGCCAG 59 NA Drosophila melanogaster 50 Rab35 FBgn0031090 FBtr0070028 2 1 1 85 X 20052026 20052046 GGAGGAGATCCAGAATAACTG 59 20051828 20051846 TAATGACCACCTTCCTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14215 FBgn0031052 FBtr0074746 3 1 1 93 X 19548265 19548283 TCCTCAGATCTACCACGAG 59 19548337 19548493 CATGGCAATCTTAGAGAATGTG 59 NA Drosophila melanogaster 50 CG8028 FBgn0031010 FBtr0113005,FBtr0074685 2 2 2 240 X 19171810 19171828 CCTCCCACTAATCTCACTC 58 19171509 19171527 TCTTGTCCCGAATAAACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7874 FBgn0030999 FBtr0074672 2 1 1 85 X 19107687 19107705 CCGAGTGAGGAAACTACTG 59 19107754 19107772 GTCTCTACATCTCCAGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32547 FBgn0052547 FBtr0114369 3 1 1 112 X 18341147 18341227 TCTTCCTGCTGATGTACTG 58 18341053 18341071 ATGCTCGTACATCATGACG 59 NA DesignRelaxed Drosophila melanogaster 50 por FBgn0004957 FBtr0074577 3 1 1 74 X 18273102 18273120 CTGGGCTACATCTACAGTC 58 18273046 18273064 CAGACAGTCCATGTAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAP16F FBgn0030893 FBtr0074513 1 1 2 80 X 17990422 17990440 AATCAAGAGTCCGTTGGTC 59 17990483 17990564 GACAGATCGGTTAACAACCA 59 NA Drosophila melanogaster 50 RhoGAPp190 FBgn0026375 FBtr0074483,FBtr0074482,FBtr0074481 2 3 3 81 X 17542202 17542220 TCTCAATTACCGAATCGCC 59 17541816 17542158 GTACACGCAAATAAGACCAC 59 NA Drosophila melanogaster 50 B-H2 FBgn0004854 FBtr0074429 2 1 1 196 X 17215116 17216700 GAATCGCAGAACCAAATGG 59 17216859 17216878 CCTGGCGGTAATAGATATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13004 FBgn0030797 FBtr0112996 1 1 2 111 X 16721788 16721806 TCATCTGCGGTTATGTCAC 59 16721625 16721714 TTCTGGGAGTTGATATGTGG 59 NA Drosophila melanogaster 50 CG4829 FBgn0030796 FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337 2 5 5 92 X 16718723 16718742 GAGAAGGGATACCATGTGTC 59 16718794 16718964 CAAATAGATTTGGTACTGCTCG 59 NA Drosophila melanogaster 50 CG4678 FBgn0030778 FBtr0074320,FBtr0074319 2 2 3 110 X 16602677 16602698 GGATTGGATATCCAAGATTCAG 58 16602769 16603422 GAGTAGGTCTGGAACATGG 59 NA Drosophila melanogaster 50 CG9699 FBgn0030772 FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369 1 6 7 76 X 16588098 16588116 CATTGAGGCGGTTAAATGC 59 16580767 16580785 TGTAATCGCGATCCTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13012 FBgn0030769 FBtr0074374 3 1 1 123 X 16563467 16564099 GAGGACTCGATTACCAAGG 59 16563362 16563380 AAGATACCATGGACACGAG 58 NA Drosophila melanogaster 50 Nup153 FBgn0061200 FBtr0113475,FBtr0074284 3 2 2 60 X 16494295 16494313 GGAAGAGGATGAATCCTCG 59 16494337 16494421 CATGATGGAGTTGTTGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG9784 FBgn0030761 FBtr0074289 1 1 1 60 X 16491325 16491343 CATGCAGCTATCCATTGAG 58 16491283 16491301 ATCACTGATGGTGTACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 exd FBgn0000611 FBtr0074136,FBtr0074135,FBtr0074137 2 3 3 93 X 15888238 15888257 AATTGGAGAAGTACGAGCAG 59 15888313 15888394 TTTGGTGTAATGGGTCTCG 59 NA Drosophila melanogaster 50 eIF5 FBgn0030719 FBtr0074149,FBtr0074144,FBtr0074148,FBtr0074147,FBtr0074146,FBtr0074150,FBtr0074145 3 7 7 131 X 15882571 15882661 TTCGATCACAAGAATGAGC 57 15882458 15882476 AGTTAAATTGGTCTCCGGA 58 NA Drosophila melanogaster 50 CG8928 FBgn0030711 FBtr0074132 3 1 1 61 X 15839249 15839267 CAGAACGCACATTGAACAC 59 15839291 15839310 GTTCAAGTACACAAGGTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8928 FBgn0030711 FBtr0074132 1 1 1 60 X 15839301 15839319 GTACTTGAACAGCACACTG 58 15839343 15839361 ATTTGAGGCATCTTCACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6324 FBgn0030647 FBtr0074037 3 1 1 181 X 15374491 15374509 TTCATCGGAGATGCAAGAG 59 15374751 15374997 TATTAAAGCGACGCTTTGC 59 NA Drosophila melanogaster 50 CG14414 FBgn0030571 FBtr0073931,FBtr0073930,FBtr0073932 1 3 3 295 X 14475629 14475647 CAATGCGCTACTGAAACTG 59 14475980 14475998 CGCGATCCTTGTTAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 dpr8 FBgn0052600 FBtr0073913 3 1 1 181 X 14338550 14347009 CAACATTGTTGAACCCGTC 59 14348118 14348136 TGACTAATGATATGCCGCC 59 NA Drosophila melanogaster 50 CG13403 FBgn0030544 FBtr0073928 1 1 1 63 X 14085585 14085603 CTGGTTATTACTCGGGTGG 59 14085540 14085558 TAGTTCTTGTAGCTGGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 up FBgn0004169 FBtr0073851,FBtr0100563,FBtr0073852 1 3 6 109 X 13493488 13494116 GATGAAGAGTACACCAGCTC 59 13490755 13490773 TTGATGAACTCTGGATCGC 59 NA Drosophila melanogaster 50 CG15743 FBgn0030465 FBtr0073755 1 1 1 60 X 13180750 13180768 CAAATCTTCTCCGAGGAGG 59 13180790 13180810 GATCTAGATCATAGCCGTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32644 FBgn0052644 FBtr0073714 2 1 1 80 X 12862154 12862271 CAGTGGACAAGAGTTATTCGA 59 12862313 12862331 CCAACATCAACAAGCTTCG 59 NA Drosophila melanogaster 50 Smr FBgn0024308 FBtr0073707,FBtr0073706,FBtr0073708 3 3 3 87 X 12604889 12604909 GCAATTATCTTGGACAGAAGC 59 12604744 12604841 TTGGATTCACTAACATCCGA 58 NA Drosophila melanogaster 50 CkIalpha FBgn0015024 FBtr0073680,FBtr0073682,FBtr0073681 2 3 3 82 X 12550118 12550137 CTGAACTATTGTCGTAGCCT 59 12550182 12550381 GTTCTGAACAGTATGCGGA 59 NA Drosophila melanogaster 50 CG1824 FBgn0030403 FBtr0073658 3 1 1 74 X 12489034 12489052 TTTGTGGACCTACTTGGAG 58 12488903 12488922 ATATAAGCCACTATCAGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073483,FBtr0073492,FBtr0073491 3 3 12 180 X 11276005 11281814 ATAGCTGATAATCAGCGCA 58 11281957 11282028 GTATCTGTGAAGTCTGGGAC 59 NA Drosophila melanogaster 50 CG18292 FBgn0030269 FBtr0073437 3 1 1 89 X 11032020 11032041 GTGGACATAGTTAAGTTACCAC 58 11032091 11032109 TGGATATCCATGATGTCCA 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 sesB FBgn0003360 FBtr0073423,FBtr0073422,FBtr0073421,FBtr0073424 3 4 4 116 X 10676325 10676422 GTACAAGCAGGTCTTCCTG 59 10676227 10676245 GGGTAGACAAAGCACAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG2889 FBgn0030206 FBtr0071450 2 1 1 97 X 10369643 10369720 GACTCCTCAGATGATGAACC 59 10369780 10369798 GATATCGGACCCTGATCCT 59 NA Drosophila melanogaster 50 ric8a FBgn0028292 FBtr0071317 2 1 1 64 X 9150342 9150360 CACCTGAAACGACTAGAGG 59 9150388 9150406 GTGTTGAATTCGTCCAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7065 FBgn0030091 FBtr0071299 3 1 1 127 X 9038862 9038880 AAAGGAGAAGCTTAAGGGC 59 9038971 9040049 CGTTGGTACCTTTGAAGGT 59 NA Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071271,FBtr0071270 2 2 10 101 X 8770411 8770431 CGTGTAAAGAAGTATGTGGAC 58 8770084 8770349 TGATCCAGTCATATCATCGG 58 NA Drosophila melanogaster 50 CG11265 FBgn0030049 FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964 1 4 4 141 X 8459066 8459084 ATGATATCGGTCGAAGCAG 59 8459189 8459419 ATGATTCGACCCAGTATCG 58 NA Drosophila melanogaster 50 Sptr FBgn0014032 FBtr0071241 3 1 1 61 X 8357605 8357623 CATCAAAGTCCTGGAAGCA 59 8357562 8357580 GCTCATCCCTGTAATCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32711 FBgn0052711 FBtr0071248 3 1 1 144 X 8302474 8302564 AAGCAATGGCACAATACAC 59 8302285 8302304 TCTTAGAAGTCATCTGCACG 59 NA InUTR Drosophila melanogaster 50 Traf2 FBgn0026318 FBtr0071188 2 1 1 60 X 8049920 8049938 TCGAACATCATACAGCTGG 59 8049878 8049897 TGATCTCGATCTTGATGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sn FBgn0003447 FBtr0071101,FBtr0071100,FBtr0071102 2 3 3 84 X 7879376 7879471 AGGATCTGCATAAGATCGC 59 7879519 7879537 AATCGGTTCCATCATCCAG 59 NA Drosophila melanogaster 50 CG1531 FBgn0029985 FBtr0071098 3 1 1 87 X 7844741 7844759 GATTCCCAGCATATTAGCG 58 7844808 7844906 CGTAAAGTAATCCTGATCGAG 58 NA Drosophila melanogaster 50 CG33667 FBgn0053667 FBtr0091646 1 1 1 60 X 6365896 6365914 ATTGAAGACGATGTCGAGG 59 6365854 6365872 TAACTACTGCACCACATCC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3774 FBgn0029849 FBtr0070875 2 1 2 105 X 6114596 6115421 TACCCTTCCAATATGGCTC 58 6115489 6115508 CGATTTGAATGATCAGCTCC 59 NA InUTR Drosophila melanogaster 50 CG5928 FBgn0029836 FBtr0100295,FBtr0070871 2 2 2 80 X 5962699 5963093 CTCAACACCTTTATTCAGAAGC 59 5963131 5963152 TCCTATGATATCCAATTGAGCC 59 NA InUTR Drosophila melanogaster 50 CG33080 FBgn0053080 FBtr0070845,FBtr0070844 2 2 2 141 X 5604996 5605518 ATATTTCTGATCGGCTATGC 57 5604874 5604892 ATTGACCCGATATCACCTC 58 NA Drosophila melanogaster 50 CG15778 FBgn0029788 FBtr0070803 3 1 1 76 X 5578110 5578128 TATTATCGCGATACGGAGC 59 5578238 5578257 ATATTGGCCATTTGGTAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15464 FBgn0029748 FBtr0070743 1 1 1 61 X 5081425 5081443 GCATCATACAGTGTTTGGT 58 5081845 5081863 CTAGGTCAAAGGTTCTCCC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2713 FBgn0024978 FBtr0070497 2 1 1 179 X 2625007 2625025 ATCATGTGAAGAACCTGGA 58 2624728 2624806 TCTGCGCAATTATCTTTAGG 58 NA Drosophila melanogaster 50 CG2694 FBgn0024991 FBtr0070482,FBtr0070483,FBtr0070481 2 3 3 104 X 2609385 2609403 GAAACCGACATGAAGACAC 58 2609551 2609569 CATCTCGTTCAGATTCTGG 57 NA DesignNoJunction Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 2 13 13 80 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567130 2567220 TGTATTGAGAGCTCATGCTC 59 NA Drosophila melanogaster 50 CG4045 FBgn0025629 FBtr0070331 2 1 1 68 X 1969242 1969260 GCCTATATCCTCAGGAAGG 58 1969125 1969143 TATCCACTTGTGCAAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 trr FBgn0023518 FBtr0070362,FBtr0070363 1 2 2 82 X 1776708 1776782 TTGGCGAGATCTAAGATCC 58 1776644 1776665 CCAATGTACTCGATTATCATGG 58 NA Drosophila melanogaster 50 CG14801 FBgn0024988 FBtr0070305,FBtr0070304,FBtr0070306,FBtr0070307 1 4 4 83 X 1738112 1744662 GCATCGAAGACAAACTCCT 59 1744709 1744727 AGTCTATATCCTCGCTGGT 59 NA Drosophila melanogaster 50 SNF1A FBgn0023169 FBtr0070216,FBtr0070218 2 2 3 80 X 1270212 1270739 TTGTACCAGGTCATATCGAC 58 1270781 1270800 AATATAGTCGAACAGCTCCC 58 NA Drosophila melanogaster 50 CG41576 FBgn0085702 FBtr0114151 1 1 1 60 U 6401115 6401135 CGTAGTGATTCCATGATAAGC 58 6401157 6401175 AAGCAGTTCAAGACAAGTC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 dpr7 FBgn0053481 FBtr0113462,FBtr0113463 2 2 3 81 4 270357 270431 GTTCACGTATTAACTGGTGAG 58 270296 270315 TTATCATTGCAGTGAAAGCC 58 NA Drosophila melanogaster 50 tre-1 FBgn0085056 FBtr0113492 3 1 1 60 3R 12591664 12591684 CTCATAAATTTACCGGGACAC 58 12591624 12591642 GGTTCTCCAGATACTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11539 FBgn0039859 FBtr0085868 1 1 1 64 3R 27441570 27441588 CTTAGAAGAGGAGCACGAG 59 27441524 27441542 CAATGAAGGTCAGCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PH4alphaPV FBgn0051015 FBtr0085670 3 1 1 80 3R 26473290 26473382 CTGTTAAAGCTTAACCAGCA 58 26473229 26473247 CAGTTTAATATCGTGCGGG 58 NA Drosophila melanogaster 50 CG31013 FBgn0051013 FBtr0085671 1 1 1 85 3R 26470934 26471014 CAGTACAATGACAGCATGAG 58 26470868 26470886 TGAATAGCATCCGATGGTC 59 NA Drosophila melanogaster 50 Acph-1 FBgn0000032 FBtr0085610,FBtr0085609 1 2 2 104 3R 25818488 25818562 GATTTGACCAATTTGGGCA 58 25818402 25818420 GTAGATGTTCTCGTTGGAG 57 NA DesignRelaxed Drosophila melanogaster 50 CG7866 FBgn0039725 FBtr0085504,FBtr0110889 2 2 2 68 3R 25759755 25759773 TTTCTCGTCATGGACATCC 59 25759805 25759972 ATCGCTGGCATTAAATTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 fig FBgn0039694 FBtr0085538 3 1 1 72 3R 25605299 25605317 AGAGCACGATCTACTTGTG 59 25605245 25605263 GAAACTGGCATTCATGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11501 FBgn0039666 FBtr0085426 1 1 1 297 3R 25319591 25319609 AAATCCAATCATGGCATCC 58 25319870 25319888 AAATTCCTGTGACCAATCG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085377 3 1 8 106 3R 24959596 24959614 TAAACCAAACGACCGAGTC 59 24959681 24960297 GTTTGATTTCTCCATGTAACCG 59 NA Drosophila melanogaster 50 CG11828 FBgn0039616 FBtr0085338 2 1 1 98 3R 24749510 24749529 TGAAGAGAAATTGGATCCTG 57 24749590 24749664 GGTAAATCATGCATAGCGA 57 NA Drosophila melanogaster 50 Doa FBgn0053553 FBtr0110913 2 1 9 80 3R 24727254 24745225 ATTATCTAACAGCAAAGCCC 57 24745268 24745286 TGTGATGGAGAATGTCTCC 58 NA Drosophila melanogaster 50 CG9989 FBgn0039593 FBtr0085307 1 1 1 100 3R 24496949 24497017 TACGTAAACACCGTTCCAC 59 24497081 24497099 AAACAAGCTTGTGTTGCTC 59 NA Drosophila melanogaster 50 CG4849 FBgn0039566 FBtr0085257 3 1 1 138 3R 23790245 23790322 TAAACAAGATTGATCGCCTC 57 23790481 23790500 GGCGAAACTAAGAGATTGTC 58 NA Drosophila melanogaster 50 wdb FBgn0027492 FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206 1 7 7 125 3R 23392424 23392442 AAATTCTTAGGACTGCGGG 59 23392253 23392336 GTTGATGATACTGCCAAGGA 59 NA Drosophila melanogaster 50 dys FBgn0039411 FBtr0113293,FBtr0084970,FBtr0113294 3 3 3 85 3R 21904395 21904539 AAGTACTCAACGATCGAGAG 58 21904329 21904347 GAACTGGATCTTCGACTGG 59 NA Drosophila melanogaster 50 CG5111 FBgn0039343 FBtr0084880 2 1 1 60 3R 21333523 21333542 CTTACTACTCTACAGCACCT 57 21333565 21333583 TAGTTTCCAAAGCATCTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31087 FBgn0051087 FBtr0084855 1 1 1 80 3R 21137039 21137117 GGTTTGGCTGCTTATATGG 58 21136977 21136995 GCTTTCCAGATTAGCATCG 58 NA Nonspecific Drosophila melanogaster 50 CG10514 FBgn0039312 FBtr0084864 1 1 1 60 3R 21104634 21104653 CTTCTCTAAAGGAGCCACTG 59 21104593 21104612 TTGTGGTAGAACTGGAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11839 FBgn0039271 FBtr0084766 2 1 1 60 3R 20896234 20896253 AACTACTGTCGAGAAACTGC 59 20896273 20896294 CTCCGATTTATTGGTCTTATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rox8 FBgn0005649 FBtr0084591 1 1 4 151 3R 19870107 19870125 GTATCCATACGCGTACCAG 59 19869856 19869925 ATTGTATGCAAGGGACTCC 59 NA Drosophila melanogaster 50 fzo FBgn0011596 FBtr0084399 1 1 1 60 3R 19028881 19028899 AGAAGGTAAAGGATCAGCA 57 19028839 19028857 ACACCTAATTCATCCACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 loco FBgn0020278 FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273 3 4 4 86 3R 18446567 18446652 GCACCAAGATGAACTACTC 57 18446499 18446517 AAGTCGAAGTTGATTTCGG 58 NA Drosophila melanogaster 50 Gr93a FBgn0041229 FBtr0084133 1 1 1 60 3R 17659187 17659207 CTATCTACAGCGAACTCTACC 59 17659228 17659247 ATCTGCCATTGTAGAATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13420 FBgn0038900 FBtr0084130 3 1 1 64 3R 17594518 17594536 ATCTCTGGTACGGAAAGTG 58 17594563 17594582 GGATTCTCCTCGTACATACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7956 FBgn0038890 FBtr0100124,FBtr0110891,FBtr0084112 1 3 3 90 3R 17350160 17350178 AAATCTCCGTTTATGGTGC 58 17350229 17350313 GAGTATAGTCTCCCTTTAATGC 57 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0110938,FBtr0110939,FBtr0084021,FBtr0084022 2 4 12 106 3R 17027123 17027417 TATATGGTAGCATGCGTCG 59 17027487 17027505 GTAGATGTCGTCGAGATCG 59 NA Drosophila melanogaster 50 CG17193 FBgn0040571 FBtr0083838 1 1 1 149 3R 15865449 15875380 TATTACAGTGGTCACTCGT 57 15865318 15865337 GTTGATATAGTACTCCCGCT 58 NA Drosophila melanogaster 50 Pk92B FBgn0014006 FBtr0083818,FBtr0083819 3 2 2 81 3R 15708426 15708446 CGATATGATCCTGGAGATGAC 59 15708486 15708573 GTACTCGTACTCGATATTAGCG 59 NA Drosophila melanogaster 50 CG6195 FBgn0038723 FBtr0083803 2 1 1 123 3R 15473741 15473760 GATTTGATGTGCTCAAGAGC 59 15473584 15473655 GTGAACTCATAGTTTGCCG 58 NA Drosophila melanogaster 50 Nup58 FBgn0038722 FBtr0083781 2 1 1 60 3R 15471785 15471803 GGGACAATAAGCAAGATGG 58 15471887 15471906 TTTATTATCTCGTCGGGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gukh FBgn0026239 FBtr0089768,FBtr0100317 1 2 4 83 3R 14844133 14844151 AAGTCCAATTCTTCGACGG 59 14844197 14846661 ACGTTGATACCCTTCTTCAC 59 NA Drosophila melanogaster 50 CG31226 FBgn0051226 FBtr0083675,FBtr0083676 3 2 2 223 3R 14677345 14677363 TATCCTTGCTATCCTTGCG 59 14677087 14677158 CTTGCAAGAGATGTTCAGC 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG31229 FBgn0051229 FBtr0083663 3 1 1 299 3R 14494369 14494387 TCCGTTAATCCCAACATGG 59 14494719 14494737 CATGTAGTAGTCGATGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 Rpb4 FBgn0053520 FBtr0100273,FBtr0100275 2 2 5 95 3R 14079507 14079585 TGAGATTGGAGATCTGCCT 59 14079430 14079448 TAGTCCAAATACGACTGCG 59 NA Drosophila melanogaster 50 Ssdp FBgn0011481 FBtr0083612,FBtr0083611,FBtr0083613 1 3 3 65 3R 14020957 14020975 AAGATCAAGGAGAGCATGC 59 14020910 14020928 GTAGTCCGGATGATCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CREG FBgn0025456 FBtr0089896,FBtr0089897 3 2 3 177 3R 13219547 13219565 TTCCATGATCAGTGGACAG 58 13219255 13219273 AGGACCTCCATAGAAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Abd-B FBgn0000015 FBtr0083382,FBtr0083385,FBtr0083384,FBtr0083381,FBtr0083383 1 5 5 82 3R 12755407 12755425 AATGCGTATGTTTCCAAGC 59 12755286 12755362 TGGAACCATATCTTGACCTG 59 NA Drosophila melanogaster 50 CG14889 FBgn0038443 FBtr0083299 1 1 1 184 3R 12391040 12391058 GAGATCGCGGTGATATAGG 59 12391315 12391401 GCCATATAAGTATTCGATGGTG 58 NA Drosophila melanogaster 50 CG14896 FBgn0038433 FBtr0083311 3 1 1 60 3R 12286761 12286779 ACACCACTAAAGAACGACC 59 12286719 12286737 TCCTCCGTTTCATTAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tara FBgn0040071 FBtr0083258,FBtr0083257 1 2 2 60 3R 12083771 12083789 CAGGAGTTGCTACAAGGAC 59 12083813 12083831 GGAGAGTTTGAACATGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pnr FBgn0003117 FBtr0083220,FBtr0083221 2 2 2 128 3R 11865150 11865168 CATTCAGACCAGGAAACGA 59 11865260 11865346 GGTTTGAGATCATGCTCCT 59 NA Drosophila melanogaster 50 c(3)G FBgn0000246 FBtr0083196,FBtr0083195,FBtr0083194 2 3 3 107 3R 11617294 11617385 CGCAAGAGCTGAATAATATGC 59 11617207 11617228 GTAGAATCATAGATTTGGCCAC 58 NA Drosophila melanogaster 50 CG5623 FBgn0038357 FBtr0083197 1 1 1 60 3R 11592485 11592505 GTTTACTTCTTCGATGAGACC 58 11592445 11592463 CACAATTGATGAGCTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsc70-4 FBgn0001219 FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056 2 6 6 71 3R 11071531 11071549 GGTATCCTCAACGTGACTG 59 11071584 11071602 CTTGTCGTTGGTAATGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6966 FBgn0038286 FBtr0113236 2 1 1 92 3R 10908850 10908868 GTCAAGTACCTGGTACACC 59 10908559 10908577 GAAGTGACCCTTGTAGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 pr-set7 FBgn0011474 FBtr0082929,FBtr0082928,FBtr0082930 3 3 3 97 3R 10142502 10142520 CGTTTGATGAAGGTCACTC 58 10142581 10142670 AAGGGAACTCCTATTGTGC 59 NA DesignRelaxed Drosophila melanogaster 50 sqd FBgn0086897 FBtr0082854,FBtr0082857,FBtr0082856,FBtr0082855 3 4 4 252 3R 9468818 9468901 AACGACTGAGAAGGAACTC 58 9468584 9468602 CTCATCGCTGATCTCTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 mthl12 FBgn0045442 FBtr0082746 2 1 1 91 3R 9180640 9180717 GGTTAAAGACTGGAATTCGTC 58 9180767 9180788 CTGTTAGGACGAACATTATCAC 58 NA Drosophila melanogaster 50 CG3942 FBgn0038008 FBtr0082561 3 1 1 60 3R 8080686 8080705 CGTTTATCGCGTTATCTGAG 58 8080726 8080746 CCAATTGAAGATACTGGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp313a3 FBgn0038007 FBtr0082617 1 1 1 84 3R 8063780 8063852 GATAGGCACGATTGTTGAC 58 8063714 8063734 GGCCTTATTAATGACAGAGGT 59 NA Drosophila melanogaster 50 CG4860 FBgn0037999 FBtr0082623 1 1 1 142 3R 8046859 8046877 GAACTCGGTCTCATGTCAG 59 8046605 8046623 AGGTACAGGTTATTCACGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12224 FBgn0037974 FBtr0082505 1 1 1 93 3R 7807394 7807412 GTTTGACTATTCGGCTGAC 58 7807264 7807339 GTCATGAACCTGTAGTATGTC 57 NA Drosophila melanogaster 50 glo FBgn0037954 FBtr0089918,FBtr0089917,FBtr0089919 1 3 3 279 3R 7644430 7644448 AATGTGACTAATGGCTCGG 59 7643734 7643752 AGAACTCCTCGATTTGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12594 FBgn0037941 FBtr0082429 2 1 1 80 3R 7556031 7556110 ACATTAAGGGCTAAGAACGA 58 7556150 7556171 CTCCAGATAAAGATTGTGAGTG 58 NA Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082455,FBtr0082453,FBtr0082456,FBtr0082454,FBtr0082452 1 5 6 156 3R 7419365 7419384 CCGAGAAAGATAATGGAGTG 57 7418220 7418238 TCTGTGTTCTGACCAAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 wkd FBgn0037917 FBtr0082414,FBtr0082413 1 2 2 135 3R 7409665 7409685 GGCCTACTCGATATACAATCC 59 7409782 7409858 GTCCTGCAGGTATACATCG 59 NA Drosophila melanogaster 50 CG10898 FBgn0037911 FBtr0082410 1 1 1 127 3R 7384370 7384388 CTTCTGATGATCGAGGAGG 58 7384551 7384569 TTTAGACCAGTCTCTTCGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG6672 FBgn0037875 FBtr0082371 2 1 1 97 3R 7039729 7039747 ATCTGTTCCTCTTTCTGCT 58 7039579 7039597 GAATGAGTCGGAGATCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 fau FBgn0020439 FBtr0082306 2 1 4 75 3R 6602946 6602964 GAAAGTGGATTTACGACCC 58 6600778 6602907 TCTTCGTTCTCGTAACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 unc-115 FBgn0037733 FBtr0082095,FBtr0082094 3 2 4 108 3R 5515793 5516164 TTAGCGAGATGTACATCCG 58 5515557 5515575 TACTCCCGGAGTATCAGAC 59 NA Nonspecific Drosophila melanogaster 50 CG16789 FBgn0037712 FBtr0082071 1 1 1 80 3R 5393270 5393345 GATCGATCTGTTTAACGATACC 58 5393385 5393404 TAGATCATGTCCTCATAGGC 58 NA Drosophila melanogaster 50 ps FBgn0026188 FBtr0082038,FBtr0111031,FBtr0111029,FBtr0111030,FBtr0082037,FBtr0111028,FBtr0111027 2 7 9 133 3R 5269786 5270772 CATATTCATCATGGCGAGAC 58 5270868 5270886 GACATCTTGACCCTAGCAC 59 NA DesignRelaxed Drosophila melanogaster 50 Task7 FBgn0037690 FBtr0082045 2 1 1 108 3R 5237316 5237402 TGGCAATGATAGGATATGGTC 59 5237174 5237192 GACTGGAACATCACCAGAC 59 NA Drosophila melanogaster 50 CG9356 FBgn0037688 FBtr0082047 1 1 2 157 3R 5228688 5228706 TGTAATCAGCCTAAGTGCC 59 5228480 5228567 TAATGAATTCCAAGGCCCT 58 NA Drosophila melanogaster 50 Mst85C FBgn0028708 FBtr0081969 3 1 1 61 3R 4877048 4877067 ACGGATGATATACCATCCAC 58 4877091 4877109 ATTTGATAGGCGGGATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nmdmc FBgn0010222 FBtr0081996,FBtr0081997 1 2 2 288 3R 4868835 4868853 AATGTCAGTCTACCGATGG 58 4868498 4868583 GGCGAACTTCTTCAAAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 pyd FBgn0003177 FBtr0089782,FBtr0089781,FBtr0114459 3 3 8 82 3R 4660660 4661006 CATATACGGTACCCTACGAC 58 4660597 4660615 GTAGATGCTGTACTTGCTG 57 NA Drosophila melanogaster 50 hb FBgn0001180 FBtr0081950,FBtr0081951 2 2 2 60 3R 4518943 4518961 TGTGTCAACAAATCCATGC 58 4518901 4518920 GGTACTGATACACAGAACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2767 FBgn0037537 FBtr0081822 3 1 1 89 3R 3832619 3832638 ATCTGCAACTGGACTATGTG 59 3832489 3832567 CCTTGTCGAGCTTAAAGCT 59 NA Drosophila melanogaster 50 CG1287 FBgn0037506 FBtr0081554 2 1 1 60 3R 3327004 3327022 CCCAAAGGATCGTTAAGTC 57 3326962 3326982 GGATCGTAAGGGAATTTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14607 FBgn0037488 FBtr0081575 3 1 1 60 3R 3068831 3068849 CTACAACGATTCCGATGGA 59 3068873 3068891 AGGATAATCCACTCCAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1162 FBgn0026564 FBtr0081669 1 1 1 60 3R 2580440 2580460 ACTTGAGCATATACTCCTTGG 59 2580400 2580418 TTTCATGCTCGATTTGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ccp84Ad FBgn0004780 FBtr0081690 3 1 1 273 3R 2518877 2518895 CTACAAGAGAACCGTCCAG 59 2519132 2519150 GTAGGAGGTGTAGGTAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ccp84Ag FBgn0004777 FBtr0081689 2 1 1 143 3R 2512464 2512482 TTCGGTATCTAGAGCAACC 58 2512804 2512822 GATCGTACTCCTCAACCTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG33097 FBgn0053097 FBtr0081735,FBtr0110852 3 2 2 90 3R 2191999 2192077 TCGAATGATTTCCAAGTCG 57 2191927 2191945 TTCTAGTGGTACTAAGGCC 57 NA Drosophila melanogaster 50 Obp83cd FBgn0046878 FBtr0078584 3 1 1 151 3R 1934343 1934999 CATCACCAACATGGAAAGC 59 1935113 1935132 CATTGACAGGATAGTAGGCG 59 NA Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078675,FBtr0078672 2 2 5 165 3R 1586675 1587378 AATTCGGACATCAAATCGTG 58 1586473 1586491 ATGACATCTACCTTGCAGC 59 NA Drosophila melanogaster 50 Tim17b1 FBgn0037310 FBtr0078784 2 1 1 142 3R 1126497 1126515 TGTGGTGTCCCATTATTCG 59 1126621 1126705 ATGCCGAAGAGTCAATCTC 59 NA Drosophila melanogaster 50 5-HT2 FBgn0013743 FBtr0078854,FBtr0078855,FBtr0112871 2 3 3 143 3R 452787 452805 AGTTTGGGACGCTATATGG 59 452912 452991 ATTGACCAGACCAAGAACG 59 NA Drosophila melanogaster 50 CG31522 FBgn0051522 FBtr0078940 2 1 4 60 3R 273408 273428 ATAGTGGTAAGTACCAGACCT 59 273368 273386 AAGGTTAGCCAAATTAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41468 FBgn0084029 FBtr0111210 3 1 1 106 3R 245351 245370 ATGTTTGTTGCATGACAGAG 59 245264 245282 TTCTTATACTGCTTGGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9772 FBgn0037236 FBtr0078952,FBtr0078953 2 2 4 89 3R 162252 162270 GTTTGCGGACAATTAGACC 59 162121 162199 GCTCCTGGATACTAGTCTG 58 NA Drosophila melanogaster 50 CG9776 FBgn0027866 FBtr0078956,FBtr0078955 2 2 2 110 3R 155851 155869 GTCCAAGAAAGACGAGGAC 59 155694 155715 GCATCTATTGTACTACGTTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 aux FBgn0037218 FBtr0078965,FBtr0078966 3 2 2 143 3R 52283 52301 TTCTCTGCTCTATGCACAC 59 52405 52485 CTGTTCCATTATGCTTATCAGG 58 NA Drosophila melanogaster 50 snoRNA:Me28S-A30 FBgn0086081 FBtr0114357 3 1 1 66 3L 17996125 17996144 CTTACAGGTGTTATTGGGAC 57 17996078 17996096 TTTCTCAGACAGTTTCCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-1086 FBgn0083058 FBtr0113602 2 1 1 82 3L 833172 833193 CCAGAAATCAGAAATGTCTGTG 59 833111 833130 CTAACGATGCTAGTAAGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14455 FBgn0037175 FBtr0078543 3 1 1 61 3L 22680020 22680038 CTCTTTCAAGGTCATCCTC 57 22679977 22679995 TAAGGTCCAGGAACTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14457 FBgn0037174 FBtr0100669,FBtr0078517 2 2 2 126 3L 22672341 22672359 TTCTATCTCAACCGCATCC 59 22672446 22672528 TCTTAAATACCTGACTGTCCAG 59 NA InUTR Drosophila melanogaster 50 CG11404 FBgn0037169 FBtr0078513 2 1 1 150 3L 22541720 22541741 GAATATTCCTATTATCGGCCAG 58 22541850 22541923 CAAGGAGATGTGATAGATCTG 57 NA Drosophila melanogaster 50 CG7470 FBgn0037146 FBtr0078477 1 1 1 100 3L 21971467 21973414 GTCACAAGAATGTTGGTCG 59 21973478 21973496 GAAGATGACCAGTAGGACG 59 NA Drosophila melanogaster 50 mub FBgn0014362 FBtr0078469,FBtr0078468,FBtr0078470 2 3 4 154 3L 21914292 21914310 AGATTCGCCAAATATCCGG 59 21914425 21918298 AGCAGTCTCCATTGATATTCTC 59 NA Drosophila melanogaster 50 Mkrn1 FBgn0029152 FBtr0078383,FBtr0078384 3 2 2 90 3L 21524869 21524890 CAGAGCCAGAATGAAATAATCG 59 21524616 21524634 TTGAAATCATCTCCAGCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG7324 FBgn0037074 FBtr0078404 3 1 1 82 3L 21331902 21331979 CAAAGGGCTTATGAGAATCTC 58 21331840 21331859 TTTAGCTGGGTAAAGCTCTC 59 NA Drosophila melanogaster 50 CG5955 FBgn0036997 FBtr0078197 3 1 1 135 3L 20461344 20461421 GAATGTTACGATCCAACGG 58 20461520 20461538 ATCACTGGAAATCACTCCT 57 NA Drosophila melanogaster 50 CG6933 FBgn0036952 FBtr0074855,FBtr0074854,FBtr0074853 2 3 3 61 3L 20211888 20211906 TGTACCCATAACCGATGTG 59 20211845 20211863 TTCTTGCAACCCTCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Deaf1 FBgn0013799 FBtr0100666,FBtr0074882 1 2 2 219 3L 19812918 19812936 AAGTACAAGGACAAGTGGC 59 19821425 19821443 GTGTAAAGAGACGGACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33647 FBgn0053647 FBtr0091624 3 1 1 123 3L 19229813 19229831 CAGATGCTATCAAGTGTGG 57 19229984 19230002 ATCCCTTTGCGTAATACCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6812 FBgn0036843 FBtr0075025 3 1 1 99 3L 19058397 19058415 GATAATGGAGAGGCTGGAG 58 19058478 19058562 CATGAAGCAAAGGAAGCAC 59 NA Nonspecific Drosophila melanogaster 50 CG14077 FBgn0036830 FBtr0075072 3 1 1 80 3L 18906645 18906663 AAACCTCTAACAGCGATCC 59 18906532 18906602 GTGTTGTGCAACAATTTGTG 59 NA Nonspecific Drosophila melanogaster 50 CG14074 FBgn0036818 FBtr0075061 1 1 1 60 3L 18860061 18860079 CCTCCTCTCCTATAAGCGA 59 18860103 18860121 GATTTGTCCACCTCTTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32202 FBgn0052202 FBtr0075051 1 1 1 135 3L 18675422 18675440 AAACTGTATGACAGGTGCC 59 18675600 18675618 CTCCGTGCTTATCTAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TORC FBgn0036746 FBtr0075196 2 1 1 60 3L 17655909 17655930 GAAACAACAATAGCAGTAGTGG 59 17655870 17655889 GAAGTGGTTATTCCCAAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jon74E FBgn0023197 FBtr0075207 3 1 1 81 3L 17541554 17541660 CATGAATGACGAATCCACTG 58 17541492 17541512 GTATTCACAGTCCTCATTGGA 59 NA Drosophila melanogaster 50 Nedd4 FBgn0036736 FBtr0075179,FBtr0075178 1 2 4 110 3L 17527654 17531772 AACAGTGATAACGACTCTGG 59 17531914 17531932 GATTCTGACATACGGGTCG 59 NA Drosophila melanogaster 50 Dab FBgn0000414 FBtr0075318 1 1 1 124 3L 16715182 16715200 AGAAATCTTGGAAGCGTCC 59 16715288 16715370 TTTCTTGCGGAATCTTCGT 59 NA Drosophila melanogaster 50 Abl FBgn0000017 FBtr0112790 2 1 2 168 3L 16622298 16624486 ATGAACTTAGAAGCCCTGC 59 16622148 16622166 ATGTAGTCGAACTGTGACC 59 NA Drosophila melanogaster 50 l(3)73Ah FBgn0002283 FBtr0075311 3 1 1 78 3L 16582568 16582586 ATAACGCATCTCAAGAAGC 57 16582628 16582764 TGCACAGTATGTCGATCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG12272 FBgn0036571 FBtr0075452 1 1 1 80 3L 16115389 16115466 GTGCCCAGTATTTATAGATTGG 58 16115505 16115525 CTTGAAGTAGCTGAAATCCAG 58 NA Drosophila melanogaster 50 CG17026 FBgn0036550 FBtr0075513 1 1 1 60 3L 15969358 15969377 CTTCGATATCATGAAGCCAG 58 15969400 15969418 TATCTCAGCTCTCAGTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11552 FBgn0036465 FBtr0075669 2 1 1 60 3L 15035384 15035404 CATCACCATCAAGGATTATGC 59 15035344 15035364 GTAGTAGGTATTTAACTGGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL39 FBgn0036462 FBtr0075672 1 1 1 95 3L 14991964 14991982 CTTGCAGCTTTATGTTGGG 59 14991714 14991907 CTGATTTGATATTGGGTCCAG 58 NA Drosophila melanogaster 50 CG33262 FBgn0053262 FBtr0075826 2 1 1 60 3L 13129590 13129610 TCTTGAGTATGAATCCCTGAC 58 13129631 13129650 ATAGGGCAGATAGTACTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6004 FBgn0036203 FBtr0076119 3 1 1 60 3L 11763355 11763374 AAGATAGTACGACCCAAGAG 58 11763314 11763333 GACGATTCAGTAGACAAAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18331 FBgn0036181 FBtr0076140 2 1 1 60 3L 11606151 11606169 CAAATGGCGATAACAGCTC 59 11606109 11606129 GATACTTCCTTCGTTGTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mob1 FBgn0036172 FBtr0089331,FBtr0089330,FBtr0089333,FBtr0089332 3 4 4 161 3L 11520315 11520333 CTAGTGGATCTTCCAGCTG 59 11518601 11518686 CCATAAGTACGTTCTGTTGC 58 NA Drosophila melanogaster 50 GlcAT-P FBgn0036144 FBtr0100422,FBtr0076189,FBtr0076190 3 3 3 90 3L 11171623 11171758 AGTGCAGAGATATTCTCACG 59 11171552 11171570 AGGTTCGTGTTCTTGTAGC 59 NA Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326 1 11 11 88 3L 9773789 9773875 CCTCATGAGATCTTTGTGC 58 9773927 9773945 TCATACTTGATCCAACGGG 59 NA Drosophila melanogaster 50 CG18177 FBgn0036039 FBtr0089410,FBtr0089411 3 2 3 141 3L 9721700 9721819 ACCCTGGACTTTATTAGATCAC 59 9721919 9721939 GATAAAGTTGAAGCGAGTGAG 59 NA Drosophila melanogaster 50 CG14174 FBgn0036036 FBtr0076402 3 1 1 60 3L 9713146 9713164 AGATTAGAACCTCCAACGA 57 9713188 9713206 CAATGTCTGGTGTTTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS9 FBgn0010408 FBtr0076423,FBtr0076424 1 2 3 162 3L 9504210 9504228 CTGGCTAAGATCCGTAAGG 59 9503662 9503680 CCTCAATCTTCAGACCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Tequila FBgn0023479 FBtr0076526 1 1 4 80 3L 9078337 9078356 AAGACACAGTTGGTTTACAG 57 9078396 9078481 GGCAGATAGTATCATAGTTTGG 58 NA Drosophila melanogaster 50 CG6372 FBgn0035915 FBtr0076638 3 1 1 95 3L 8612112 8612192 ATGCATATTGATGCCACCA 59 8612250 8612269 GATAAGAGTACGAGTGGGTC 58 NA Nonspecific Drosophila melanogaster 50 ImpE1 FBgn0001253 FBtr0076607 3 1 2 84 3L 8373009 8373027 CAATAGCAGTTGTCTGGAG 57 8373075 8373093 ATACTTACGTCCCAGACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ImpE1 FBgn0001253 FBtr0076607,FBtr0076606 1 2 2 88 3L 8368102 8368120 AACATCGAGAAAGCAACCT 59 8372245 8372263 CTGTGAAGATGATCAGCAG 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG8546 FBgn0035785 FBtr0076859 1 1 1 80 3L 7450152 7450231 GAGCGGAAGGTATTATTCCC 59 7450272 7450292 TATAACCATCCTCCACATTCC 58 NA Drosophila melanogaster 50 CG8563 FBgn0035777 FBtr0076852 2 1 1 109 3L 7387919 7387937 CACTGGAACTATCAGGGAG 58 7388097 7388115 TTGAATTCCAGATACCGCA 58 NA DesignNoJunction Drosophila melanogaster 50 mus312 FBgn0002909 FBtr0110926,FBtr0076840,FBtr0076839 3 3 3 83 3L 7323266 7323285 TGATGAAGAGAAGTCCACTG 59 7323328 7323408 GATTTATAATCTTCCTTGGCGG 59 NA InUTR Drosophila melanogaster 50 sgl FBgn0010851 FBtr0076938 3 1 1 205 3L 6955021 6955039 ATGAGGTGGTGAAGAAGTG 59 6954351 6954369 CACAATCTTGTTGGACTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32392 FBgn0052392 FBtr0076948,FBtr0076947 3 2 2 265 3L 6750547 6750630 CAAACAGGAAGAATTCCTGG 58 6750301 6750319 AGACGCTCTTCATAAGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14911 FBgn0035701 FBtr0076966 3 1 1 84 3L 6477655 6477797 GTGGCGAGAAATACAATTACC 59 6477843 6477861 TCCGAATAGTAAGCACTGC 59 NA Drosophila melanogaster 50 Jon65Aiv FBgn0035664 FBtr0077040 1 1 1 96 3L 6032821 6032839 TCTCCAACTCCTACTCGAC 59 6032899 6032917 TGAAGATTGGTAGCCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dhc64C FBgn0010349 FBtr0073359 3 1 2 82 3L 4807821 4807899 TGGATAAAGATTTCCTCGGA 58 4807758 4807776 AAGAGTAGTTCTGTACGCG 59 NA Drosophila melanogaster 50 CG11357 FBgn0035558 FBtr0073310,FBtr0113143,FBtr0113142 1 3 3 147 3L 4551933 4552115 CATATCGTTCCAAATGGCG 59 4552224 4552244 TCTACCCAGAAGTATTTGGAC 58 NA Drosophila melanogaster 50 CG15021 FBgn0035544 FBtr0073301 2 1 1 165 3L 4437763 4437781 TCTGAGTATTTGCCACCTC 58 4437910 4437928 GATAAGTAGGTCCTGGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr64e FBgn0045476 FBtr0073199,FBtr0073200 3 2 2 94 3L 4034471 4034489 TCTGAAGTTGCCCAAAGAG 59 4034547 4034625 TCATAATGTGCTCCACCAG 59 NA Nonspecific Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 3 9 15 80 3L 3083795 3084813 CTCGCCACTTATATGAATCGA 59 3084852 3084873 CAAATTAAGTAGTGAGAACCCG 59 NA Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996 2 6 15 81 3L 3083796 3085208 TCGCCACTTATATGGTCAC 59 3085252 3085271 TATGGTGCATAGAAGTTGGG 59 NA Drosophila melanogaster 50 CG1271 FBgn0035392 FBtr0072986,FBtr0072988,FBtr0072987 3 3 4 226 3L 3054470 3054549 CATATGATTAGGGTTGATGGC 58 3054737 3054755 GTTTCGTACTCCTTGGGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG1893 FBgn0035390 FBtr0073005 2 1 1 95 3L 3045791 3045809 AACATCAAGAACACATGCG 59 3045123 3045733 GCTCAATACCTTGAAGTTGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG33232 FBgn0035347 FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920 2 4 4 87 3L 2495884 2495902 ACATTAGCTCCGAGTACAC 58 2495951 2496030 GCATTATGACCATATGACTCC 58 NA Drosophila melanogaster 50 CG13800 FBgn0035338 FBtr0072891 2 1 1 60 3L 2406755 2406775 CTTGATGTTACTACTAGCACC 57 2406796 2406815 TATCGTTAGAGGTTGGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13802 FBgn0035330 FBtr0113127,FBtr0072886 2 2 2 60 3L 2299266 2299774 AAAGCTGAGTGACCTTATGG 59 2299797 2299815 CAGGATGAAGTTGATGCTC 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG13802 FBgn0035330 FBtr0113127,FBtr0072886 1 2 2 80 3L 2299260 2299768 TTACCTAAAGCTGAGTGACC 59 2299811 2299829 CTCATCGAACAGTACAGGA 58 NA Nonspecific, InUTR Drosophila melanogaster 50 ecd FBgn0000543 FBtr0072903 2 1 1 60 3L 2265109 2265129 CAACGTATACGAATGAATCCC 58 2265069 2265087 CAATGCACGACTGTATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32301 FBgn0052301 FBtr0072875 2 1 1 83 3L 2245337 2245358 GATTCCAAGAGTACAACATGAG 58 2245401 2245471 TCATAGCCATTTGAAACACC 58 NA Drosophila melanogaster 50 CG7995 FBgn0035266 FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767 2 5 5 157 3L 1743701 1743719 CATCTCCACGTACTTCTCG 59 1743909 1743927 TTACATCCGTGATGTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33230 FBgn0053230 FBtr0072757 3 1 1 60 3L 1620199 1620217 TACCTCCAAGAGTGTATCC 57 1620241 1620259 TCTATGCAGCTAGATGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2199 FBgn0035213 FBtr0072722,FBtr0072721 3 2 2 60 3L 1340536 1340554 CGTAGACATTCTGGGTACG 59 1340494 1340514 CTTAGGTCCTTCAACCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13882 FBgn0035126 FBtr0072509 3 1 1 92 3L 290251 290271 CTAAATCTTGAGGTTGCAGTG 59 290325 290765 GAACTCCGCTTTAACACTG 58 NA Drosophila melanogaster 50 CG13879 FBgn0035120 FBtr0072502 3 1 1 61 3L 258924 258944 AAACCCTTAAGATCCCAAAGG 59 258967 258985 CAGCGAATCTACCTTCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 thoc7 FBgn0035110 FBtr0072527,FBtr0072526 3 2 2 142 3L 212556 212635 TAGTGGAGATGAATGACGA 57 212367 212450 GTACATGATGGGATTGCTG 58 NA Drosophila melanogaster 50 CG6845 FBgn0035099 FBtr0072473,FBtr0072472 1 2 2 108 3L 148743 148762 GGTTTATTGCGGTAAATGCT 59 148832 148904 CGAAGAGTCGTCTACTTCAG 59 NA Drosophila melanogaster 50 CR14499 FBgn0034317 FBtr0086751 2 1 1 60 2R 14075373 14075392 GAAGAACTTCTTCGGATCGT 59 14075414 14075433 TTGCTAAAGCTCAGAAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 zip FBgn0005634 FBtr0072398,FBtr0072399 2 2 4 100 2R 20885210 20885808 TGCTCATTAACTTCTCGGT 58 20885128 20885149 CATCTTCAATCCATTGACTACC 58 NA Drosophila melanogaster 50 RpL19 FBgn0002607 FBtr0072406,FBtr0072405 3 2 2 63 2R 20856642 20856660 GATCGCTAACACAAACTCG 58 20856531 20856549 CTTGATGATCAGACCATCC 57 NA DesignNoJunction Drosophila melanogaster 50 Reg-5 FBgn0015801 FBtr0072427 1 1 1 195 2R 20676665 20676683 CCTCTACTCAACATTCGCT 59 20676360 20676506 AATCGATGACCAGATCAGC 59 NA Drosophila melanogaster 50 CG30161 FBgn0050161 FBtr0072333 3 1 1 62 2R 20551201 20551219 ACTATCAGTAAGCCAAGCT 57 20551157 20551177 CCTAATTTCTGGATTGCTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mAcR-60C FBgn0000037 FBtr0072368,FBtr0072367 3 2 2 146 2R 20271139 20271461 GAGATCAAACAGCAGTGAC 58 20271011 20271029 GTCATGTAGACACTCTCCG 59 NA Nonspecific Drosophila melanogaster 50 CG3209 FBgn0034971 FBtr0072178 2 1 2 116 2R 19958425 19958446 CCACAATAAGCAATATAAGCCC 59 19958521 19959527 GTTAACCACACTACCAAAGAG 58 NA Drosophila melanogaster 50 CG13561 FBgn0034906 FBtr0072243 3 1 1 138 2R 19692161 19692182 AGCCCTTTCTCTACAATATCTG 59 19691983 19692062 ACTATTTCCGGTGGAATCG 59 NA Drosophila melanogaster 50 l(2)efl FBgn0011296 FBtr0072100 3 1 2 282 2R 19572570 19572588 AAAGCATGAGGAGAAGCAG 59 19572244 19572262 TAACTAACACTGAAGGCGG 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG4019 FBgn0034885 FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103 3 4 4 214 2R 19495764 19495783 ATCGAGTTCGTAATCACCTC 59 19495489 19495507 TAGATCCAGTTGCTCTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 RpL22-like FBgn0034837 FBtr0072049 1 1 1 60 2R 19135049 19135068 ATTTGGCCATGAAAGAATCG 59 19135008 19135026 GAGACCAACTTCTGGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13516 FBgn0040658 FBtr0100554 3 1 1 80 2R 18557546 18557655 TCTGTTTGGTCGGATTCTG 59 18557698 18557717 GACAATAGTGGTTTCCAGTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG34445 FBgn0085474 FBtr0112749 1 1 1 71 2R 18535712 18535730 GAACTAAACCGCATTGTGG 59 18535599 18535620 CGGCACATAGTAATTAAAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30279 FBgn0050279 FBtr0071768 1 1 1 60 2R 18066732 18066752 ATGACTCGGCTAAAGATTCAG 59 18066774 18066792 TTGATAGTCTGAGGCACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4363 FBgn0034663 FBtr0071740 3 1 1 101 2R 17722058 17722138 GATTCCAGCAAGGATTCCA 59 17721975 17721996 GGATTTCACATAGCAATACGAG 59 NA Drosophila melanogaster 50 lox2 FBgn0034660 FBtr0071745 2 1 1 83 2R 17677614 17677632 TTTGGAGGACAGTAACTGC 59 17677494 17677568 CAGTTAATGGAAATGCCCTG 59 NA Drosophila melanogaster 50 CG15675 FBgn0034648 FBtr0071665,FBtr0071664 1 2 2 60 2R 17554567 17554588 TAAGCAGGATTCTACTGAAGAC 59 17554609 17554627 GCTGGATTAAACTTCGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18870 FBgn0042180 FBtr0071688 3 1 1 125 2R 17503366 17503385 GTATTGGAACTGCATAACGG 58 17503193 17503211 CTATCATCGTAGTGCACCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10069 FBgn0034611 FBtr0071590,FBtr0071589,FBtr0071591 1 3 3 80 2R 17172236 17172254 ATCTATCAGATGTGAGCGG 58 17172298 17172372 GATACATCAGCAGAATGGG 57 NA Drosophila melanogaster 50 CG4286 FBgn0034601 FBtr0071627 2 1 1 61 2R 17065906 17065924 ACATCGAGGAAGAGTTCCT 59 17065863 17065881 CTTCGGATTCATGGGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10543 FBgn0034570 FBtr0071524,FBtr0071523,FBtr0071525 3 3 3 140 2R 16891581 16891599 CTGCAACTATTGCGATCAG 58 16891759 16891844 AAGCTACCCATATCTTCTTCG 59 NA Drosophila melanogaster 50 CG12484 FBgn0086604 FBtr0112775,FBtr0112776 2 2 3 89 2R 16359762 16359781 ATACACTCATTCCCGTTAGC 59 16359833 16361278 AACTGAGCTCAGTCTTCTG 58 NA Drosophila melanogaster 50 CG11200 FBgn0034500 FBtr0086300,FBtr0086299 1 2 2 80 2R 16193965 16193984 GTATCAGTACCTGGGAATCG 59 16193841 16193925 GGTTGTTTATAAAGTGCCACTC 59 NA Drosophila melanogaster 50 CG13869 FBgn0034486 FBtr0086323 3 1 1 68 2R 16126324 16126342 GAATGGTCAGGTGGATGAG 59 16126220 16126293 TGATGAGGTCTTAACAACCT 58 NA DesignRelaxed Drosophila melanogaster 50 Fak56D FBgn0020440 FBtr0086542,FBtr0086543,FBtr0114605,FBtr0086544 3 4 5 84 2R 15322745 15322828 TGGTATTAATACCGCTGAGAG 59 15322681 15322700 CCAAATCGTGAACTCTAGGT 59 NA Drosophila melanogaster 50 CG15086 FBgn0034374 FBtr0086650,FBtr0086648 2 2 4 95 2R 14570958 14570976 GGAAATGAATGTGGATGCG 59 14570540 14570899 GAACAAGTTTGAGCTGTCC 58 NA Drosophila melanogaster 50 Atg7 FBgn0034366 FBtr0086711,FBtr0086712 2 2 2 153 2R 14511077 14511156 TAGAAATCTGCTGTCCTGG 58 14510942 14510960 TTTCAATCTCTGAGCAGCT 58 NA Drosophila melanogaster 50 lolal FBgn0022238 FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778 1 4 4 80 2R 14042986 14043404 TCACAGATGTAACACTCGC 59 14042924 14042942 TAAAGTAGGGACTGCAAGC 59 NA Drosophila melanogaster 50 CG18186 FBgn0034255 FBtr0086896 2 1 1 60 2R 13521535 13521556 CATAGTGGAGAAGTTTCTAGGA 58 13521496 13521514 CTTGGTCAGATACTGAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rhi FBgn0004400 FBtr0086897 3 1 1 104 2R 13519484 13519503 AGAGCTTGAGGATCATTGTG 59 13516193 13516212 TTGGAGTCGATTATGTTGTG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7755 FBgn0034105 FBtr0087182 3 1 1 63 2R 12170027 12170045 GTTCATGTGGACAATCAGG 58 12169982 12170001 GATCATTGCAGATCTTGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30095 FBgn0050095 FBtr0087224 2 1 1 148 2R 12011642 12011660 CATGAAATACCGGGTTGAC 58 12011833 12011852 TTTCCACTTCAACATCTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 Mlf FBgn0034051 FBtr0087294,FBtr0087295 1 2 4 91 2R 11826014 11826032 CTGTGTAATCCAGGAGCAG 59 11825374 11825959 CAATGTTGCCACTGTTCTG 59 NA Drosophila melanogaster 50 CG30084 FBgn0083919 FBtr0113484,FBtr0111048,FBtr0100387,FBtr0087315 3 4 6 157 2R 11652754 11660560 ATAATGTGTACCGAGGTGC 59 11651322 11652635 GATAAAGGGTCCTCTGATCTG 59 NA Drosophila melanogaster 50 Flo FBgn0024754 FBtr0087352,FBtr0087351 2 2 2 201 2R 11454667 11454755 CTGAATCGATCAGGATTCG 57 11454423 11454441 ATCGTGATCTTCTTAGCCT 57 NA DesignRelaxed Drosophila melanogaster 50 CG34365 FBgn0085394 FBtr0112588,FBtr0112589,FBtr0112590,FBtr0112587 3 4 4 99 2R 11344307 11350808 TATCGAGGAAGAAACGTCAG 59 11350870 11350888 CTCATCCGGATTGGATTCC 59 NA Drosophila melanogaster 50 CG34123 FBgn0083959 FBtr0114580,FBtr0110832,FBtr0110831,FBtr0110833,FBtr0113485 1 5 6 98 2R 11162730 11162811 CAACGAGTTGCTGATTTGG 59 11162650 11162668 GATACGAGTGATTTGGCCA 59 NA Drosophila melanogaster 50 hbs FBgn0029082 FBtr0087414,FBtr0087413 3 2 2 129 2R 10924646 10924867 TTTGACTGTCCTGTATGCTC 59 10924959 10924977 TATGGACCAGCTAATTCGG 58 NA Drosophila melanogaster 50 CG10249 FBgn0027596 FBtr0087429,FBtr0112929,FBtr0087431,FBtr0087430 3 4 4 90 2R 10790219 10790298 GACAGTAATGGCAACACAG 58 10790147 10790166 CATCGCAAACCTTAGAATCC 58 NA Drosophila melanogaster 50 Cyp6a22 FBgn0013773 FBtr0087450 2 1 1 60 2R 10759575 10759595 AAACAGATCCTCATACAGGAC 59 10759616 10759635 GCTCATTGTGATACATTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10205 FBgn0033970 FBtr0087447,FBtr0087446 2 2 2 102 2R 10720445 10720679 CAATCATCGGCTAATGCTC 58 10720745 10720763 TATGCTGATCACATCCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsc70-5 FBgn0001220 FBtr0087568 3 1 1 76 2R 10141098 10141118 CATAGTCCACGATACTGAGAC 59 10140982 10141060 TCTTTAGCTTCTCGCACTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG16935 FBgn0033883 FBtr0087622 2 1 1 66 2R 9748392 9748410 AATTGCCGAATTGAAGCAG 59 9748344 9748362 AATTTCGGCCTCTGTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30484 FBgn0050484 FBtr0087639 2 1 1 60 2R 9734917 9734936 TAAGGAGAACAATGGAAGTG 57 9734959 9734977 TTGTCCTGCTTAGTCATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr50Ca FBgn0033867 FBtr0087629 3 1 1 163 2R 9661772 9661852 CCTCATATGAGGACATGCA 58 9661979 9661997 GATCCTAGAGTGGGTTTGG 59 NA Drosophila melanogaster 50 PR2 FBgn0013955 FBtr0087777,FBtr0087776 2 2 2 86 2R 9036510 9036531 GTGAAACCTATTTCTGTGAAGG 59 9036383 9036464 ATCAATCATCGACCTAGCAC 59 NA Drosophila melanogaster 50 vg FBgn0003975 FBtr0087785 2 1 1 81 2R 8774680 8774700 GGTGCCTACTATCCATATCTG 59 8774743 8778987 ACAAATCCTGGTTGAACCT 59 NA Drosophila melanogaster 50 Dgkepsilon FBgn0020930 FBtr0087853 1 1 1 82 2R 8646836 8646912 CAAGCAAATAAGGCTACAAGTC 59 8646955 8646973 GAATATCCGCTGGACTCTG 59 NA Drosophila melanogaster 50 CG33792 FBgn0053792 FBtr0091796 1 1 1 129 2R 8520422 8520440 TGGATGGTGACATAAAGGA 57 8520631 8520649 GTCAAATGGCTAATAGCGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG8569 FBgn0033752 FBtr0087940 1 1 1 145 2R 8407930 8407948 GTTGGTATTTGCCAAGCAG 59 8408115 8408135 TGGGTGTAATATCACGTTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8828 FBgn0033740 FBtr0087948 2 1 1 109 2R 8355064 8355146 AGACCAAGAACATTCAAACC 58 8354974 8354994 CTGGTCGTAGTTCTTATTCAG 57 NA Drosophila melanogaster 50 Or49a FBgn0033727 FBtr0087918 2 1 1 73 2R 8282206 8282224 ATCATATCCCTCGACACCT 59 8282319 8282337 ACAGTTTGTCGTATAACCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG17739 FBgn0033710 FBtr0087893 2 1 1 80 2R 8194961 8195075 AGGTATAATGTTAGCCTCAGTG 59 8195116 8195134 GTCACCACTCTCCAAATCC 59 NA Drosophila melanogaster 50 CG30034 FBgn0050034 FBtr0088097 3 1 1 196 2R 7405814 7405832 TGCTGAAAGCTCAATAAGG 57 7404232 7404250 TAATGATCTTGGTCAGGCA 58 NA DesignNoJunction Drosophila melanogaster 50 inv FBgn0001269 FBtr0088070,FBtr0088067 2 2 4 107 2R 7394460 7394532 TATTTATGGAGTATCCGCCG 59 7394602 7394620 ACAATCATAGCTCTTCGGG 59 NA InUTR Drosophila melanogaster 50 CG9027 FBgn0033631 FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897 1 4 4 188 2R 7269617 7269636 GATAATACCCAGGTCAAGGG 59 7269385 7269466 ACCGTGATCAACCTTATCG 59 NA Drosophila melanogaster 50 CG13213 FBgn0033609 FBtr0088180,FBtr0088178,FBtr0088179 1 3 3 80 2R 7174159 7174232 CAGGAAATTATGGACTCACCT 59 7174099 7174118 TATGATGCGGGATTCATCTG 59 NA Drosophila melanogaster 50 Taf5 FBgn0010356 FBtr0088240 1 1 1 60 2R 6766670 6766688 TCTGTACCCAATTCTGGTG 58 6766628 6766646 CTTCTCCCTTAGTCCACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CPTI FBgn0027842 FBtr0088308,FBtr0088307 2 2 2 114 2R 6360063 6360081 ATCTTCATGAACCTCACCG 59 6359708 6359985 CCTGAACCATGATAGGCTG 59 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 3 9 9 198 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349188 6349206 CTTAGTACAGTCCACAGCC 59 NA DesignRelaxed Drosophila melanogaster 50 CCS FBgn0010531 FBtr0088424 3 1 1 125 2R 6009403 6009421 CTGGGACATAATCGGAAGG 59 6009235 6009253 CGAGCAATTATACCACACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG30365 FBgn0050365 FBtr0088773 2 1 1 60 2R 4247600 4247618 GAGCCTAGATCATAGCGAG 58 4247558 4247577 GATATCCCTCGTTAGTTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lig FBgn0020279 FBtr0100575,FBtr0088775,FBtr0088776,FBtr0088774 1 4 4 80 2R 3961935 3961953 TGCCATACTATCAGCAACC 59 3961997 3962987 AATATCCCTGCACATGTGG 59 NA Drosophila melanogaster 50 CG1946 FBgn0033216 FBtr0088929 2 1 1 97 2R 3603047 3603066 AAATGTTTGTGCGTAGTCTG 59 3603123 3603215 GAATAACCAACCATTACCTTCC 59 NA Drosophila melanogaster 50 CG17985 FBgn0033199 FBtr0088946 1 1 1 200 2R 3539848 3541990 TGACGAAGCCAATATGGAG 59 3539666 3539684 TAGACCAAGGGTATGACGA 59 NA Drosophila melanogaster 50 CG1602 FBgn0033186 FBtr0088960 3 1 1 86 2R 3405554 3405572 TAGCAACGATGAAGAAGGG 59 3405429 3405448 TCTATCAGGTCGGTAGTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111052 2 1 60 98 2R 3236476 3242402 CAGTACCCTTCTTTAGATGGT 58 3236398 3236416 TGAGAGTACCAGAGACCTG 59 NA Drosophila melanogaster 50 Gadd45 FBgn0033153 FBtr0089049 2 1 1 240 2R 3136988 3137006 GATCGATATGGCCATGGAG 59 3137209 3137228 CTTGATCACGTAGATGTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12831 FBgn0033141 FBtr0089057 3 1 1 74 2R 2961010 2961028 CAATTACGCATCCATCAGG 58 2960954 2960974 GAATTGGTGGATAACCTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30159 FBgn0050159 FBtr0089761,FBtr0089760 1 2 2 157 2R 2880914 2880932 TTTCCCGATCTTCACTAGC 59 2881053 2881071 AGACAACAAAGTCCTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eb1 FBgn0027066 FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130 3 5 5 160 2R 2642342 2642416 CAAATCAGGTGATGGATATGC 59 2642600 2642619 AGTCGCATATAAGATGTCCA 58 NA Drosophila melanogaster 50 jing FBgn0086655 FBtr0114364,FBtr0114363,FBtr0086104,FBtr0114365 1 4 5 184 2R 2506076 2506094 GTTTGACTTCTTCGACACG 59 2506242 2506321 ACTCGTCGGAAATGATCTC 59 NA Drosophila melanogaster 50 CG14470 FBgn0033046 FBtr0086049 2 1 1 60 2R 1816189 1816208 ACTTACAGCTACCATTTCGG 59 1816231 1816249 GGTACTTGTTACTGGCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10396 FBgn0033020 FBtr0086089 2 1 1 60 2R 1241894 1241915 TTATACCGATATAGCTTCTGCC 59 1241936 1241954 TCCATTCGGGTGTAATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pncr003:2L FBgn0047133 FBtr0080921,FBtr0080920 1 2 2 80 2L 16840562 16841349 CTAGTAACCTAAGCCAGATGAC 59 16841390 16841408 CCATCAAAGTGCTCATCCT 59 NA Drosophila melanogaster 50 CG17494 FBgn0040011 FBtr0111253,FBtr0111252,FBtr0111254 1 3 3 158 2L 22477292 22477310 CTTGACGATTATGACCACG 58 22477491 22477509 GCCTTCTTCTAAATCGGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG5929 FBgn0032982 FBtr0085963 3 1 1 81 2L 22189795 22189813 TCAGTCCGCTTAATCTACG 58 22189547 22189750 TTATTTAAAGCGGCTGCAG 58 NA Drosophila melanogaster 50 CG41432 FBgn0083999 FBtr0111264 2 1 1 174 2L 22011123 22011141 TAATGAACCTTGGCATCAC 57 22011279 22011297 GACTTTATACACTCGCCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1416 FBgn0032961 FBtr0085903,FBtr0085904,FBtr0085905 3 3 3 114 2L 21759359 21760490 AAGAAACTTCATCCAGCAC 57 21760568 21760586 GTCTGTTTGATGCTATGCC 58 NA Drosophila melanogaster 50 CG2201 FBgn0032955 FBtr0100510,FBtr0085921,FBtr0085922,FBtr0100511,FBtr0085923 2 5 5 90 2L 21617547 21617567 AGCGATGCGATAGTAATAGTC 59 21617416 21617496 TATATTCGCAGAAGGACCTC 58 NA Drosophila melanogaster 50 His1:CG33843 FBgn0053843 FBtr0091847 1 1 1 69 2L 21501966 21501984 AATTTAAAGGAACGTGGCG 59 21502016 21502035 CGCATTTATAAGTGGCAGTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His2B:CG33894 FBgn0053894 FBtr0091898 1 1 1 61 2L 21472897 21472915 AAGAACATCACCAAGACCG 59 21472854 21472872 TAGATGGCATAGCTCTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr39a FBgn0041244 FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510 1 4 4 89 2L 21297292 21297310 AAACAGCAAAGATGCTGAC 58 21297471 21297489 TCTGTCGAAGGTTCTTGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG31678 FBgn0051678 FBtr0081402 3 1 1 106 2L 20664111 20664129 CGGTTATACTTGACGGGTC 59 20663904 20664041 ATCGTTTATTTGCATGGGC 59 NA Drosophila melanogaster 50 cdc23 FBgn0032863 FBtr0081362 2 1 1 60 2L 20461031 20461049 AATGCCTAGACTCAGAGGA 59 20461133 20461151 CAGTCAATCGTCTTCAGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG40341 FBgn0058341 FBtr0100675 3 1 1 60 2L 20248395 20248413 TATGGCATACACTTAGGCG 59 20253474 20253494 GATTTCTTACTCTCATTCCGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 pr FBgn0003141 FBtr0089396,FBtr0089395 2 2 2 86 2L 20074323 20074778 CTATACAGTTGAGATAACCGTC 57 20074258 20074277 TCTATAGCCTCTTTCAGCTC 58 NA Drosophila melanogaster 50 lok FBgn0019686 FBtr0081330,FBtr0081328,FBtr0081329 3 3 3 286 2L 20063602 20063680 CTATTTACTTGCCTGAGTGG 57 20063929 20063947 TCAAGGAAGTTCTCCTCCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG13081 FBgn0032804 FBtr0081252 2 1 1 107 2L 19541151 19541170 CTAAGATTCCTGAGCTAGCC 59 19541302 19541320 TCTTAAGCAATTGGAGCAG 57 NA DesignNoJunction Drosophila melanogaster 50 l(2)37Cd FBgn0086445 FBtr0081156 2 1 1 109 2L 19127557 19127575 CTATCCATAACCGTGAGGC 59 19127648 19127723 TCACAAAGCGTTTCAAAGG 59 NA Drosophila melanogaster 50 mib2 FBgn0086442 FBtr0081142 3 1 1 100 2L 19037964 19038095 TCAAGTTGGAGTTCGTCAC 59 19038159 19038177 GGTGATAGTTGGGACACTG 59 NA Drosophila melanogaster 50 mRpL13 FBgn0032720 FBtr0089318 3 1 1 91 2L 18858456 18858963 ACCACCCAATGAATGACTG 59 18858383 18858401 GTAAACCCTCTTCACCCAC 59 NA Nonspecific Drosophila melanogaster 50 Faf FBgn0025608 FBtr0081126 2 1 1 79 2L 18706846 18706864 CAGTTGTATTCAAGCTGCC 59 18706728 18706803 GTGATAAACGTCAAGCACC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 elfless FBgn0032660 FBtr0081046 3 1 1 82 2L 18010982 18011002 CCAAATGAGTATTACGGAGAC 58 18010852 18010938 CTGGAATACTCCAACAGGA 58 NA Drosophila melanogaster 50 beat-IIIc FBgn0032629 FBtr0080971,FBtr0080972 1 2 2 89 2L 17191092 17193535 GATTGTTGCGTATCTTCCG 58 17191021 17191042 CAATTAACCCGAACATAGTCTC 58 NA Drosophila melanogaster 50 CG6304 FBgn0032624 FBtr0080955 1 1 1 60 2L 17012791 17012810 TTACAAGAGGGAACAACCAG 59 17012750 17012770 GTTGCTCATGTTACTGTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080903,FBtr0080902,FBtr0080899 3 3 13 99 2L 16774774 16774792 AAGTGTAACGAGACTCTGG 58 16774855 16776278 GTTCGAAACCGTTGTACTC 58 NA Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080905,FBtr0080897,FBtr0080907 1 3 13 80 2L 16777374 16777393 TGAAGGTATCCGTATTTGCC 59 16777436 16778404 TTCAGGATTTGATAGCGCA 59 NA Drosophila melanogaster 50 CG13278 FBgn0032602 FBtr0080933 3 1 1 80 2L 16758783 16758802 AGGCCTTTAATCAACCAGAG 59 16758665 16758740 GACGCTCTTCAATCATCGA 59 NA Drosophila melanogaster 50 CG18109 FBgn0028901 FBtr0080786 2 1 1 60 2L 15786031 15786049 GCCGATGGAATAAGTACCT 58 15786073 15786091 GCTTTGGCGATACTATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gli FBgn0001987 FBtr0080769,FBtr0080766,FBtr0080765,FBtr0080768,FBtr0080767 3 5 5 92 2L 15758069 15758149 TAGATATGGCAATCCGACG 59 15757995 15758016 GTGGTATTGATGTTCAAGTACC 59 NA Drosophila melanogaster 50 CG4691 FBgn0028870 FBtr0080670 2 1 1 75 2L 14761166 14761185 TCAAAGGTATACGATGCCTG 59 14761223 14761241 TCTGAAACTCTGGATCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tam FBgn0004406 FBtr0080571 1 1 1 92 2L 13824864 13824882 TTTCATGACGAACTGGAGG 59 13824731 13824749 ATGAAATACCTCTGCCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 B4 FBgn0023407 FBtr0080514,FBtr0080513 2 2 2 127 2L 13535023 13546925 CAGTCCCTCTTAAAGGCTG 59 13534914 13534932 TCTTTGTTGACTTCGTGGA 59 NA InUTR Drosophila melanogaster 50 CG9426 FBgn0032485 FBtr0080484 3 1 1 108 2L 13217750 13217768 TAGATTCAGCATGGGTGTG 59 13217601 13217678 TGTCACTGGATTGAAGCTG 59 NA Drosophila melanogaster 50 CG9928 FBgn0032472 FBtr0080496 3 1 1 60 2L 13142595 13142613 GATACCGATAGATCCGCAG 59 13142553 13142572 TGTGTATAAACTGGAATCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5122 FBgn0032471 FBtr0080431 2 1 1 125 2L 13133189 13133207 AAATCTTTGGTACGGTTCG 58 13133384 13133403 CACTTTGGGAATAAATTGGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG15485 FBgn0032442 FBtr0080412 2 1 1 60 2L 12668940 12668958 AGGATCTGGGAGTTAATGG 58 12668898 12668916 CTGGCATAGAATTGCTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31763 FBgn0051763 FBtr0080356 1 1 1 184 2L 12373889 12373907 TACAACAAACTAAGCTCGG 57 12374055 12374073 CAATACGTTGCCGTTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rho-6 FBgn0032415 FBtr0080359,FBtr0080360 3 2 2 233 2L 12131043 12131063 CTTTATAGGTATCTGCCTGGA 58 12130762 12130780 AACAATATCAGCAGGGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33129 FBgn0053129 FBtr0080169 1 1 4 106 2L 10968579 10968708 GCTTCTGAAAGCTATAAACGAC 59 10968494 10968512 GTTCTTCGTTCAGATTCGC 59 NA Drosophila melanogaster 50 CG12517 FBgn0032311 FBtr0080144 2 1 1 62 2L 10870276 10870295 ATCATCTGTATCGAACGCTC 59 10870320 10870338 ATTATCCGTCCAGGATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12299 FBgn0032295 FBtr0080113 2 1 1 103 2L 10739984 10740003 AGACTCTGACATGTACTACG 58 10740069 10740087 CATCGGTGTAAACCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7329 FBgn0032271 FBtr0080131 3 1 1 129 2L 10630166 10630184 TATGCGATTCTACTGGCAG 59 10629997 10630015 TTGCATTTGGAGGTAGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 w-cup FBgn0032269 FBtr0080132 3 1 1 60 2L 10577457 10577476 ACGAAATAACTAGGAAACCC 57 10577416 10577435 TTCTCGTTACTGGAAATGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31716 FBgn0051716 FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012 1 6 6 83 2L 10400605 10400623 AAGTCGAAGGATGCTTACC 59 10400669 10400743 ATAGCGCATCTGTTACTCTG 59 NA Drosophila melanogaster 50 CYLD FBgn0032210 FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069 2 5 5 80 2L 10296849 10296945 TTCTAAAGCTAAGCTCGGG 59 10296787 10296808 CACTCGGTAATGTTAACTTCTC 58 NA Drosophila melanogaster 50 CG4839 FBgn0032187 FBtr0079944,FBtr0079943 3 2 2 180 2L 10151645 10152707 CGAATAGTCAAGATCAAATGGC 59 10152954 10152972 GTTCGTATGAGATTGCGTG 58 NA Drosophila melanogaster 50 CG5899 FBgn0032157 FBtr0100280,FBtr0079901,FBtr0100279 3 3 3 92 2L 9910427 9910501 GTTGTTTGCTAAGAAGGGA 57 9910353 9910371 TTCATGATACGCTTTGCTC 58 NA Drosophila melanogaster 50 jp FBgn0032129 FBtr0113030,FBtr0079861,FBtr0079860 1 3 3 85 2L 9549654 9550211 AGGTTAAGGACTGGTTTGTG 59 9549588 9549608 CATGTAGACAAATAGAAGCGC 59 NA Drosophila melanogaster 50 numb FBgn0002973 FBtr0079821,FBtr0079822 3 2 2 103 2L 9460693 9460711 TGTCGAGGTCTTTGAATCG 59 9460962 9460980 CGCTGACATGAAGTAATCC 58 NA DesignNoJunction Drosophila melanogaster 50 Borr FBgn0032105 FBtr0079817,FBtr0079818 1 2 2 128 2L 9252041 9252059 TGAAACAGAAGCAAATGCG 59 9251866 9251949 TGTCTGGCATTACTTGAGC 59 NA Nonspecific Drosophila melanogaster 50 CG13096 FBgn0032050 FBtr0079698 2 1 1 60 2L 8510910 8510928 TTGAAGTCTGTTGTCTCCG 59 8510868 8510887 AATCAGAGAAGATCGAGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 grk FBgn0001137 FBtr0079708 2 1 1 82 2L 8431931 8431949 AACACAGTCTTCCATTCCT 58 8431732 8431885 ATGTAGTCACCATTCCAGC 59 NA Drosophila melanogaster 50 CG7778 FBgn0032025 FBtr0079606 2 1 1 146 2L 8349599 8349750 GTTCAGGTTTCAGTGAATGG 59 8349859 8349877 GTTACAGGCGTTCATACTG 58 NA Drosophila melanogaster 50 CG8475 FBgn0031995 FBtr0079638,FBtr0079639 2 2 2 81 2L 8195970 8196051 CTACAGATAGATTGCGTTTCTC 58 8195910 8195928 CGTGGGTGTAAATGATCTG 58 NA Drosophila melanogaster 50 Myo28B1 FBgn0040299 FBtr0079474,FBtr0079476,FBtr0079475,FBtr0079473 3 4 4 101 2L 7682050 7682123 TCTTCAAGATGGAACAGGA 57 7682187 7682206 GTTTCATGCCAATTAGATCG 57 NA Drosophila melanogaster 50 CG5973 FBgn0031914 FBtr0079446,FBtr0079448,FBtr0079447 3 3 3 129 2L 7444739 7444758 CTGATCTCCCATATTGAGGC 59 7444849 7444935 TGTCAGCCAGTTCATAATCC 59 NA Drosophila melanogaster 50 CG31906 FBgn0051906 FBtr0079412 1 1 1 62 2L 7225670 7225688 CAGATCAACAAGGATGGCA 59 7225626 7225644 GACTTTAAGGGTGACTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wee FBgn0011737 FBtr0079371 3 1 1 136 2L 6912072 6912192 CAGTCATCCAATTCTGAGTG 58 6911955 6911973 GCTCGAGCAGTTTAATCTG 58 NA Drosophila melanogaster 50 CG9498 FBgn0031801 FBtr0079282 3 1 1 115 2L 6350391 6350409 CATTCTTCAGCAACTGGGA 59 6350230 6350248 TCTTCATCAGGATGTCCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7239 FBgn0031740 FBtr0079139 3 1 1 61 2L 5803637 5803656 CTCTACATGGAGGAAGTTCG 59 5803678 5803698 CGACATATCTTGGTTTGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34124 FBgn0083960 FBtr0110838 2 1 1 127 2L 4962424 4962506 GTGTAGACCAGGTGATAGC 59 4962597 4962615 TGAGATCTGTAGCATCGTG 58 NA Drosophila melanogaster 50 mRpL24 FBgn0031651 FBtr0079058 3 1 1 92 2L 4944855 4944935 AACCAATTGAGGACTGGAG 59 4944781 4944799 TAACCTGGGTGACAATTCC 59 NA Drosophila melanogaster 50 CG2837 FBgn0031646 FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403 2 4 4 164 2L 4904903 4904923 GTTTACTCCAATATACCACCG 58 4904700 4904721 CTTGTTGAACGATTGATCATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15628 FBgn0031632 FBtr0077384 2 1 1 70 2L 4825679 4825697 ACTTTAGAGCGCTATCTGC 59 4826465 4826484 ATACGATCATTCAGGTACGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG34351 FBgn0085380 FBtr0112561 2 1 1 100 2L 4717851 4719812 CGGCTATTATGAGAACCGA 58 4719876 4719894 ATTCCTCCTCGTTGAAGTC 58 NA Drosophila melanogaster 50 CG9641 FBgn0031483 FBtr0077677,FBtr0077676 2 2 2 60 2L 2975802 2975821 AACTAATTTGTTGTCCGGAG 58 2975761 2975780 GGTACTCTGACTGTGATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18558 FBgn0031469 FBtr0077690 1 1 1 93 2L 2842922 2842940 CTTTCTCATTCCGAATCGC 58 2842785 2842803 ATAGGTGGAACAGCATTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9894 FBgn0031453 FBtr0077714,FBtr0077713 3 2 2 165 2L 2756059 2756077 GATTCCGATGAGGAAGAGG 59 2756279 2756298 ATTATTACGCCTGATCGTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG31689 FBgn0031449 FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706 1 4 4 81 2L 2738712 2738730 GAGACCTTCAACAACTGGT 59 2738773 2738878 AGAAGATGATATGGACTGGTG 58 NA Drosophila melanogaster 50 CG3515 FBgn0031431 FBtr0077750 3 1 1 60 2L 2552176 2552195 TGATCAGGTTTACATGTGGG 59 2552135 2552154 CAGATTCTTTATGCGGTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15390 FBgn0031419 FBtr0077764 1 1 1 60 2L 2375247 2375266 AAGTGTTTGATGAACAGTCC 58 2375286 2375307 GTTTCTCCTCAATAGATACCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7263 FBgn0031392 FBtr0077830,FBtr0077831 3 2 2 182 2L 2153363 2153381 GAGCCATCAAGTCTAACGA 59 2153526 2153609 GCTCAAAGAACAAGCTTCTC 59 NA Drosophila melanogaster 50 Obp22a FBgn0043539 FBtr0100503,FBtr0077866 3 2 2 75 2L 1991972 1991990 ATAGGAAGAAGGCACTGGA 59 1991915 1991933 TTGATGAAGCACATGACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14341 FBgn0031315 FBtr0077963 3 1 2 67 2L 1166937 1166956 TTTACAATTGCGAGACATGC 59 1166986 1167004 TAGTGGACATCGCTTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 capt FBgn0028388 FBtr0100022,FBtr0100023 1 2 2 102 2L 1152249 1152267 GTATCTGTCCAAGGACTCG 59 1152104 1152183 AGCCAACTCGGTATAATCG 59 NA Drosophila melanogaster 50 CG4629 FBgn0031299 FBtr0077990,FBtr0077992,FBtr0077991 3 3 3 135 2L 1085632 1085650 CGTTTACCTGGTCACTGAG 59 1085301 1085535 CAGACTGTGCATATGTTTGAC 59 NA Drosophila melanogaster 50 dock FBgn0010583 FBtr0078013,FBtr0078015,FBtr0078014 3 3 3 102 2L 831534 831552 TATTATGGAGCCATCACCC 58 831618 831723 AGTCTCCCATGTTAGTCTC 57 NA Drosophila melanogaster 50 CR40469 FBgn0058469 FBtr0113474 1 1 1 88 X 18892 18910 TAATTGTGGCTATTTGCGC 59 18962 18980 GTCTCAACACATTGGAGAC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14583 FBgn0040644 FBtr0077217 1 1 1 190 X 21303017 21303035 ATGGCAGGGAGATTATTGC 59 21302611 21302629 GTAGTGGTACTCACAGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 waw FBgn0024182 FBtr0100536 2 1 1 74 X 21241691 21241710 ATATTCTGCAAGAGACATCG 57 21241747 21241835 TATCTTTGTAATGGCACGG 57 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG34120 FBgn0083956 FBtr0110827,FBtr0110826 1 2 2 179 X 21003745 21003763 CCTTACGAGGAGTATTCCC 58 21003957 21004215 ACTTCGTATGATGTCGAACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1753 FBgn0031148 FBtr0077245,FBtr0077244 3 2 2 113 X 20919618 20919702 GATGATGGTTCTGTCCTGG 59 20919778 20919797 GATTACTCGTTTGTTGAGCG 59 NA Drosophila melanogaster 50 r-cup FBgn0031142 FBtr0077269 1 1 2 123 X 20895466 20895484 GATCCACCTACTCCTATGC 58 20895092 20895110 AAGTAGCTCCTTTCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14229 FBgn0031059 FBtr0074753 1 1 1 62 X 19588635 19588653 AACAAGATGCTGTACGACC 59 19588591 19588609 GATCACTAGCTACTGGCTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14212 FBgn0031045 FBtr0074742 1 1 1 105 X 19519897 19519915 GAGCAGGACTCCTATTTGG 59 19519984 19520002 CTTGGCTTATGAAGCTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pfrx FBgn0027621 FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720 2 8 8 60 X 19402025 19402043 CGTTAAACGAGATCGATGC 59 19402067 19402085 TTCTCCTTGATTTGCTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Her FBgn0030899 FBtr0074590 3 1 1 75 X 18098737 18098755 TCCGGAGTATATCAGAGCC 59 18098680 18098698 GAAATTGGGACACTTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8664 FBgn0030836 FBtr0074445 2 1 1 60 X 17176147 17176168 CGATATTCCCAAGGATATCCAG 59 17176108 17176126 GCTGGTGATGATCATTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8260 FBgn0030684 FBtr0074089 3 1 2 124 X 15651250 15651353 ATATCTATACGACGTTCGAGC 59 15651439 15651457 ATGTCACTAAATTCGGGCA 59 NA Drosophila melanogaster 50 CG7872 FBgn0030658 FBtr0074046 3 1 1 65 X 15473154 15473173 ATACTCTCGTTCATCGTGTG 59 15473201 15473219 ATACGGCTGCTTCATTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12608 FBgn0030630 FBtr0074018 1 1 1 252 X 15237888 15237906 GAGAACGCTCATGTTATGC 58 15237501 15237519 CCATGTCGATCTTCCAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 hiw FBgn0030600 FBtr0073970 3 1 1 92 X 14953765 14953978 CCTGATCGATGAGTTTCCC 59 14953691 14953709 TAGACAAACACTCCATCGC 59 NA Drosophila melanogaster 50 CG9512 FBgn0030593 FBtr0073979 1 1 1 248 X 14796976 14798014 AGATCCTGTTGCTTTCAGG 59 14796746 14796764 TAATGAATCCCGTCAAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11585 FBgn0030543 FBtr0114508 2 1 1 60 X 14083685 14083703 TTGCCATTCTGATTCTGAG 57 14083727 14083745 TAGGTGTTACTCAATGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2533 FBgn0030319 FBtr0073537 3 1 1 60 X 11497542 11497560 TCATTCAACTGGAAGAGCA 58 11497500 11497518 TCCTTCTGATCCGTTAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1657 FBgn0030286 FBtr0073448 2 1 1 96 X 11227172 11227266 ATCATCAACTGCATCTCGAG 59 11227325 11227343 CTACGTATATGAGCACGGG 59 NA Drosophila melanogaster 50 CG2076 FBgn0030263 FBtr0073428 3 1 1 73 X 10985881 10985962 CAATCAACGCCTCAATGTC 59 10985999 10986017 ACCACTCAGAATGGTAACG 59 NA DesignRelaxed Drosophila melanogaster 50 CG12640 FBgn0030202 FBtr0071464 1 1 1 69 X 10326643 10326662 AATCAAGCATCAATGTCCTC 58 10326593 10326611 CAGAAGTCACCTCCAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0230 FBgn0028342 FBtr0071438 1 1 1 187 X 10107392 10107410 GATGAGATGAAGCTGACCT 58 10107635 10107653 AAGAACTTGAGGGTCTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12662 FBgn0030074 FBtr0071264 2 1 1 66 X 8877778 8877796 GAGGGCACTGTTTACTCTC 59 8877730 8877750 CCTCGTAATAGCATAAAGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 e(r) FBgn0011586 FBtr0071266 2 1 2 167 X 8799405 8799543 AAGGATATCACCATGTCGC 59 8799256 8799274 ATACGTAATGGTCGGAGTG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG1785 FBgn0030061 FBtr0071250 1 1 1 134 X 8609680 8609698 GATTCCTGGACTCAAGGAC 59 8609796 8609876 TCGAATTTCTTGGCTTTGG 58 NA Drosophila melanogaster 50 Trxr-1 FBgn0020653 FBtr0071168,FBtr0071167,FBtr0071169 3 3 3 61 X 8140427 8140445 ACATCAAGTCCGTCAACTG 59 8140468 8140558 GATGTACTCCACTTTCTTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG4078 FBgn0029798 FBtr0070807 3 1 1 82 X 5644425 5644506 GAAGCGAATATGAAACTACCG 59 5644550 5644568 GCTAGTGGTTCATCCTCTG 59 NA Drosophila melanogaster 50 CG32774 FBgn0052774 FBtr0070662 2 1 1 96 X 4139676 4139791 ACTTTGTTTAACTGTGGGC 58 4139598 4139616 ATTGTTCAAGCTGGTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sgs4 FBgn0003374 FBtr0070524 3 1 1 85 X 3144133 3144151 ATTCCAAAGTCAAGATGCG 58 3144200 3144218 ACAGCATGTAGAACCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14420 FBgn0029643 FBtr0070553 1 1 1 117 X 2833952 2833970 TTCAAGACGATGTTGAGGA 58 2834051 2834069 AAGTAGCTCTCCTCATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Actn FBgn0000667 FBtr0070343,FBtr0070344,FBtr0070345 2 3 3 106 X 1924397 1924489 ATCTGTCGTTCAAGGATGG 59 1924309 1924329 AAGATTCTCCAGAGGATTGTC 59 NA Drosophila melanogaster 50 RpL22 FBgn0015288 FBtr0070148 1 1 1 131 X 658436 658454 AAGGTGGTCAAGAAGAACG 59 657013 658342 GATGTACTTCTCGAAGTCGG 59 NA Nonspecific Drosophila melanogaster 50 CG32816 FBgn0052816 FBtr0070101,FBtr0070102 2 2 2 71 X 211945 227599 TGACGAATTTCCGGAAGAG 59 211892 211911 TTTAGTACAGTGATTGGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG41521 FBgn0085666 FBtr0114113 1 1 1 204 U 2918846 2919045 GATTAGCCCATAACGTACAC 58 2919211 2919230 GAATTGGACATTATAGCCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1732 FBgn0039915 FBtr0089972,FBtr0089971 2 2 2 88 4 653333 653964 AATTCTGAGGTGTGGATCG 59 654016 654034 TTGTAACTTCCTAACGCCA 58 NA Drosophila melanogaster 50 Cec2 FBgn0000281 FBtr0089614 1 1 1 62 3R 26038650 26038668 TTGCTTTCATCATCCTGAC 57 26038694 26038751 TTATATCCGTCAGCCAACC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2126 FBgn0039876 FBtr0085857 3 1 1 87 3R 27601403 27601478 GGTTGATCTATTACTCCTTTCC 57 27601337 27601355 GTTTGATCCAGTTTGAGGG 58 NA Drosophila melanogaster 50 CG11337 FBgn0039846 FBtr0085812,FBtr0085811 3 2 3 81 3R 27230181 27230199 AAGGAGAGGAATCCAAAGC 59 27230062 27230136 GAAGGTCATGTTACGTCCA 59 NA Drosophila melanogaster 50 Pka-C2 FBgn0000274 FBtr0085727 1 1 1 80 3R 26521700 26521718 TGCCCTCATACTTTACGTC 59 26521576 26521657 AGTTTCCTAAACGCTTTGAG 58 NA Drosophila melanogaster 50 CG15536 FBgn0039766 FBtr0085628 2 1 1 60 3R 26250352 26250370 CTCTCAAGAAGCGATCTCC 59 26250310 26250328 CCAGATAGCGTAGCATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7829 FBgn0039703 FBtr0085531,FBtr0085532 2 2 2 60 3R 25643310 25643330 TACATAGTGTCCATCCAACTG 59 25643270 25643290 GGTTATTTATTATGGAGCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12259 FBgn0039557 FBtr0085270 3 1 1 60 3R 23745995 23746013 CCATCTACCAGTTTCTGCA 59 23745953 23745971 TTCAGTTCGATGAACTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acp98AB FBgn0013745 FBtr0089438 3 1 1 106 3R 23520627 23520645 TAATCCTGTTCTTAGCCGC 59 23520714 23520733 TATCCTTGCTTTAGCTGGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 side FBgn0016061 FBtr0085168 1 1 1 93 3R 23212947 23214185 AATGATCAGGCGACATCTG 59 23212872 23212890 ATTGATATTCACGTCCCGG 59 NA Drosophila melanogaster 50 sda FBgn0015541 FBtr0112882,FBtr0085066 2 2 2 80 3R 22769909 22769996 GAGATTGTCGAATACTATGGC 58 22770037 22770056 GTCCTTGTTCATGTAGATGG 57 NA Drosophila melanogaster 50 CHKov1 FBgn0045761 FBtr0113353 2 1 5 160 3R 21149169 21153867 AAACTACATCCAACGGAGAG 59 21149028 21149047 TAATTAAAGTCCAGGGCACC 59 NA Drosophila melanogaster 50 CG11892 FBgn0039313 FBtr0089645 2 1 2 138 3R 21108534 21108619 GAAGAAATTCTACGCTGCC 58 21108721 21108739 ATTCCTATAGCAGGCATCC 58 NA Drosophila melanogaster 50 CG5808 FBgn0027617 FBtr0084738 3 1 1 60 3R 20641220 20641238 GGAAAGAAGACGCTCTAGG 59 20641178 20641197 ATCTCTAGATCTAGAACGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tok FBgn0004885 FBtr0084689,FBtr0084690 2 2 2 87 3R 20568665 20568888 CAGTCACAGAGTCAGAGTG 59 20568939 20568957 CATTCTTGTAGCTGGATGC 58 NA Drosophila melanogaster 50 jar FBgn0011225 FBtr0100171,FBtr0100172,FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173 1 6 6 81 3R 20082819 20082909 ACGGTTATCATGGTTCCTC 59 20082756 20082774 ATAGTCGACTGTAGATGGC 58 NA Drosophila melanogaster 50 CG31468 FBgn0047351 FBtr0084473 2 1 1 60 3R 19525720 19525738 GGCGTGTAATAGTCCTAGG 58 19525678 19525697 TTTGCCCACATGATAATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10184 FBgn0039094 FBtr0084481 1 1 1 91 3R 19429481 19429564 TTCTGTACGAACAAGGTGG 59 19429408 19429426 ATCCTGCAGACTAAAGGTG 58 NA Drosophila melanogaster 50 fzo FBgn0011596 FBtr0084399 3 1 1 60 3R 19028881 19028899 AGAAGGTAAAGGATCAGCA 57 19028839 19028858 ACACCTAATTCATCCACGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17109 FBgn0039051 FBtr0084351 2 1 1 282 3R 18922298 18922316 TCAACATCGGTGATGTGAC 59 18922562 18922639 TTAAGGCCAAGTTCATCGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG17119 FBgn0039045 FBtr0084357,FBtr0084358 3 2 2 126 3R 18881433 18881519 CAAAGAGATTGTGAAGGATGTG 59 18881328 18881346 GATCTGCGGATAGAAGGAC 59 NA Drosophila melanogaster 50 CG31156 FBgn0051156 FBtr0100546,FBtr0084277 1 2 2 124 3R 18436664 18436739 GTACTCAAGCACATTGCTG 59 18436558 18436577 GATTTCTCACCTATGCTTCG 58 NA Drosophila melanogaster 50 mats FBgn0038965 FBtr0084229 3 1 1 139 3R 18247752 18247770 ATGATCTCATGAAGCATGC 57 18247934 18247952 GTACAGCATGTTGATCTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6439 FBgn0038922 FBtr0084190 2 1 1 156 3R 17843782 17843800 GACTTCGAGTGCTACTTCC 59 17843587 17843605 TCATGTTAAGGGTCTGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34148 FBgn0083984 FBtr0111019 1 1 1 80 3R 17704017 17704036 AAGTACCACTGTAGCAAGAG 59 17703788 17703974 GCATTGGTAAGCCTTAAGG 58 NA Drosophila melanogaster 50 CG3301 FBgn0038878 FBtr0084100 3 1 2 219 3R 17101299 17101375 CAAACAAAGATCACGAGCA 58 17101018 17101116 CTTTGGTCACTTGGAAGTG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7000 FBgn0038867 FBtr0084027 1 1 1 60 3R 16991958 16992038 GAACTTATGTCTGGAACACCT 59 16991918 16991937 CCATGTCCAGATTAAACTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34139 FBgn0083975 FBtr0110955 2 1 1 107 3R 16038325 16038467 GGAATATTAGGTTTCCTCAACG 58 16038535 16038553 ATTCTGCTGAATCCAATGC 58 NA Drosophila melanogaster 50 CG4538 FBgn0038745 FBtr0083855,FBtr0083856 2 2 2 91 3R 15725519 15725605 CTCTATAATGGAACAACTGCTG 58 15725449 15725467 CTTTAACATAGTCGGCGGT 59 NA Drosophila melanogaster 50 ire-1 FBgn0038736 FBtr0113248,FBtr0113249 3 2 2 86 3R 15682734 15682752 GTCTCTGATGAGGCTTACC 59 15682609 15682687 CACATAAAGGGATTGGAATAGC 59 NA Drosophila melanogaster 50 CG7715 FBgn0038646 FBtr0083685 2 1 1 98 3R 14554043 14554134 GAAAGTATTCGCATTGTGC 57 14553963 14553981 CAGCGGATACTGATCTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12321 FBgn0038577 FBtr0083616 2 1 1 60 3R 14014299 14014317 TAAAGGACAAGCGTACCAC 59 14014257 14014278 CAAATGCTCGGTATGATTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083348 3 1 6 94 3R 12484785 12558454 TATCGCAGGTACAAATGGT 58 12484709 12484727 AATGATTCGTGTGGAACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8925 FBgn0038404 FBtr0083253,FBtr0113241 2 2 2 114 3R 12005514 12005532 CCGACGTAGTCTTATTGGT 58 12005609 12005688 AATGAGACACTTGGCTATGG 59 NA Drosophila melanogaster 50 Trax FBgn0038327 FBtr0083093 2 1 2 60 3R 11188257 11188327 CGGTTACATCAGTCTAAACTG 58 11188349 11188367 CATGGTAGTGATCTTACGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(var)3-9 FBgn0003600 FBtr0083131,FBtr0083130 3 2 3 192 3R 11085402 11088280 CAATCAAGCTGGGTTATGC 59 11085228 11085246 ATAAGAATGTCGTGACCGG 59 NA Drosophila melanogaster 50 CG12207 FBgn0038220 FBtr0082922,FBtr0082921,FBtr0082923 3 3 3 154 3R 10126681 10126702 CCTTAACAAGATAGACAACACC 58 10127025 10127044 TCTTGTAGGAGTTGTTCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33109 FBgn0053109 FBtr0082900 3 1 1 60 3R 10046970 10046991 CTCTAACTGGTCTAGGTTTGAG 59 10046931 10046949 GCCTTGATGTTCGTTAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3061 FBgn0038195 FBtr0082869 1 1 1 81 3R 9859758 9859776 TTGGACTCTCCATGATGTC 58 9859818 9859901 CGCTTCACCGAATATTTATGAG 59 NA Drosophila melanogaster 50 CG6234 FBgn0038071 FBtr0082648 1 1 1 80 3R 8476860 8476937 ATGAAATTAAGCTTGCGGTC 59 8476977 8476998 CTTCATCGATTGTCTTTGACTC 59 NA Drosophila melanogaster 50 CG5196 FBgn0038039 FBtr0082585,FBtr0082584 3 2 2 198 3R 8236686 8236758 ATCAGTATACATTGACGCG 57 8236919 8236938 CGAGTGACCTTAATCATGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6834 FBgn0037935 FBtr0082438 2 1 1 83 3R 7511672 7511742 ACTGAAAGATCACACTTCCA 58 7511608 7511627 TTAACGTCCGTAAAGTTGTC 58 NA Drosophila melanogaster 50 CG14708 FBgn0037910 FBtr0082409 3 1 1 62 3R 7380010 7380030 TCGAGTCTCTACAATATCGAC 58 7380054 7380072 CCTATCCAGATTCACGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6293 FBgn0037807 FBtr0082240 3 1 1 70 3R 6134934 6134952 TGGAACCAATACCTTTGGA 58 6134818 6134836 GTATTACACGTCGGGATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33783 FBgn0053783 FBtr0091784 1 1 1 136 3R 5892589 5892608 GTACGTGCTATGAGAAGTCC 59 5892707 5892903 TAGCGATAGAATGCACGTC 59 NA Drosophila melanogaster 50 PpD3 FBgn0005777 FBtr0082129,FBtr0082128 2 2 2 85 3R 5574499 5574517 TTAAGGGTTACTATCGCCG 58 5574564 5574640 CTTGGCTACGAATTCAAAGTC 59 NA Drosophila melanogaster 50 CG8319 FBgn0037722 FBtr0082077 3 1 1 77 3R 5453630 5453709 AAGGTTCACAGCAATTCAC 58 5453750 5453768 TTGGTGGTTATCCAGATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8135 FBgn0037689 FBtr0082030 1 1 1 97 3R 5232748 5232767 GGTCTCATCCATATGGACAC 59 5232885 5232905 GAGATGATGCCAATAACATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG16736 FBgn0037668 FBtr0081985 2 1 1 76 3R 5082868 5083009 ACTATCGAAATTTCTGGAGAGG 59 5082813 5082832 TTTCCAACCGGTAAATAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst84Da FBgn0004172 FBtr0081584 1 1 1 107 3R 3191578 3191598 CCACCTTCAATAGTTAACACC 58 3191667 3191685 AAACGTAATTCGGGTTGAC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG10286 FBgn0037439 FBtr0081717 3 1 1 60 3R 2195611 2195631 CATGGAGACAGAGGATATGAC 59 2195653 2195671 GCATTGGTTAGGTTTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pak FBgn0014001 FBtr0081714,FBtr0114607,FBtr0081715,FBtr0081716 3 4 4 85 3R 2184959 2184977 CATTTCAGGACTTCCTCGA 58 2185026 2185115 TAGGAAGGGATGCTTTAGC 58 NA Drosophila melanogaster 50 Osi4 FBgn0037412 FBtr0078615 2 1 1 72 3R 2045634 2045943 AAGATGATGTACCAGTTCCC 59 2045581 2045599 CTCCATGAAGCGGATAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12147 FBgn0037325 FBtr0078793 2 1 1 60 3R 1252662 1252681 TATTGGAAACGGATCCTTCG 59 1252621 1252639 CTTCTCGTGGTACTTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31534 FBgn0051534 FBtr0078865,FBtr0078866 3 2 2 84 3R 534702 534721 GTCCATCGAGGATAAGATCC 59 534768 534896 TTTCAGTTCCTCTTGCGAG 59 NA Drosophila melanogaster 50 CG31525 FBgn0051525 FBtr0078924 1 1 1 60 3R 253547 253567 TTCTGAGCTAGCTAGAAATCC 59 253589 253607 AAAGAAGCCTGTTATGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 siz FBgn0026179 FBtr0111038,FBtr0078289,FBtr0078290 3 3 3 119 3L 21066241 21066320 TCATCCGATACGATCTTCG 58 21066401 21066421 GCGCAGATTCTTGATAAAGTC 59 NA Drosophila melanogaster 50 CG7323 FBgn0036943 FBtr0074863 1 1 1 82 3L 20149055 20149073 TGTCATTCTGCTTGGACTC 59 20148918 20149011 GAGTGCATTAAGTAGTGTCAC 58 NA Drosophila melanogaster 50 obst-J FBgn0036940 FBtr0074866 3 1 1 60 3L 20123880 20123900 AGGAGAATATTCAGGTAGAGC 58 20123840 20123859 TTATGTTTCGCTGGAATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kto FBgn0001324 FBtr0074884 2 1 1 170 3L 19835690 19835781 CCGAGAAGATTTGCATAAAGG 59 19835913 19835931 GTTGCTGAGTATTGACCAC 58 NA Drosophila melanogaster 50 Shal FBgn0005564 FBtr0074973 2 1 2 90 3L 19565450 19565468 CTGGATGACAACTATCGGG 59 19565167 19565397 AATGTTGCTACATCGTTGTC 58 NA InUTR Drosophila melanogaster 50 CG32214 FBgn0052214 FBtr0074929 1 1 1 60 3L 19460454 19460472 AGAGTTTCTAGCCTTCCGA 59 19460496 19460573 AGCGTATTTGAACATGGTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075006,FBtr0075013 3 2 11 122 3L 19302782 19302856 AAAGTGGCCTACTACTTGG 58 19302678 19302696 AAACTCGATCTCGTTGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6497 FBgn0036704 FBtr0075250 2 1 1 60 3L 17246813 17246831 AGTAACAGCCTACTTGCAC 59 17246771 17246789 CTTCCAGTACATGAGGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 retinin FBgn0040074 FBtr0075375 3 1 1 216 3L 16325082 16325159 GTCTAGATTGTTCCTGCCC 59 16325339 16325357 CTCCTGGGATTGATCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5284 FBgn0036566 FBtr0075444,FBtr0075445 2 2 2 82 3L 16087580 16087598 TTATCCGTTCCTAGACAGC 58 16087644 16087720 AAGTTTCATTCCGCTTTGG 58 NA Drosophila melanogaster 50 Eig71Ef FBgn0004593 FBtr0075584 3 1 1 206 3L 15650397 15650418 GGCTGTGTACTTATTAATGGAC 58 15649896 15650230 TTTCCTCTTGTGAGCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 FucTA FBgn0036485 FBtr0075641 1 1 1 84 3L 15145211 15145229 TACTATCTGGAGTGTCCGT 58 15145276 15145480 TACTATCCCGTCTGTAGGTG 59 NA Drosophila melanogaster 50 CG9311 FBgn0036448 FBtr0075700 1 1 1 82 3L 14764772 14764857 GGATTCGATTCACCTATCGT 59 14764709 14764727 GACTCATTGCCCTCTATCG 59 NA Drosophila melanogaster 50 CG7257 FBgn0036224 FBtr0076040 1 1 1 111 3L 11935816 11935906 TTGAAGGTCGTTTCCTCTG 59 11935978 11935999 CCATGAATATGATACATGGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rt FBgn0003292 FBtr0076146 3 1 1 116 3L 11578107 11578184 CGCTATACACAGACTGAGG 59 11578009 11578027 GGATTGTAGCTCCAGTAGC 59 NA Drosophila melanogaster 50 Cdk8 FBgn0015618 FBtr0076369 2 1 1 93 3L 9831632 9831650 TATTCAACTACGAGGGCTG 58 9831495 9831575 GCATATTCTTTGCCATCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ImpL3 FBgn0001258 FBtr0077008 1 1 1 185 3L 6253759 6253778 TCCAACTTTCTGAAGAACCC 59 6253525 6253611 ATCGGGACTGTACTCTACC 59 NA Drosophila melanogaster 50 CG5592 FBgn0035645 FBtr0077029 2 1 1 105 3L 5891556 5891577 CTATGTCATCAGTAATTGGAGG 58 5891643 5891718 CATAAGCCAACTTGGTGAC 58 NA Drosophila melanogaster 50 CG15011 FBgn0035518 FBtr0073244 3 1 1 112 3L 4256644 4256662 GGTTTACAAGTGCAACGAG 59 4256490 4256570 CGCAAGGATAATTCTTCAAGC 59 NA Drosophila melanogaster 50 Cpr64Ac FBgn0035512 FBtr0073252 1 1 1 142 3L 4212503 4212521 AGTAACCGATCATCACACC 59 4212379 4212397 TGAATCCGTTGACCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr64c FBgn0045477 FBtr0073196 3 1 1 82 3L 4031425 4031502 TCATAGCTTTCAATCCAAGG 57 4031547 4031565 TTAGTACGCGAATGATGAC 57 NA Drosophila melanogaster 50 CG17723 FBgn0035432 FBtr0073057,FBtr0073055,FBtr0073058,FBtr0073054,FBtr0073056 1 5 5 85 3L 3312395 3312526 CATATTAGGTGCCGTAACCT 59 3312574 3312592 GTAGAGTGGATACCCTCGT 59 NA Drosophila melanogaster 50 CG12734 FBgn0035411 FBtr0073036,FBtr0073035 2 2 2 141 3L 3183013 3183031 TACAAGATGGTACGCATGG 59 3183135 3183209 GTATCAACATCTCACAACGC 59 NA Drosophila melanogaster 50 CG32846 FBgn0052846 FBtr0073009 2 1 1 128 3L 2951188 2951269 ATGATCCCAATGCTTCTGG 59 2951078 2951098 ATTGGTAGTAGTCCGAAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9970 FBgn0035380 FBtr0073010 1 1 1 60 3L 2916269 2916287 ACAGTAACTACAAGGTCCC 58 2916227 2916246 ATGAAGGGTTTACTCTTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2083 FBgn0035376 FBtr0073014 3 1 1 154 3L 2792351 2792370 GTTGAGAATCGAGAAGATCG 58 2792153 2792235 TATATGCAGCTATGCATCTG 57 NA DesignRelaxed Drosophila melanogaster 50 CG32308 FBgn0052308 FBtr0072851 2 1 2 81 3L 2023320 2025974 CAAATTTCTTCAGACTGGAAGG 59 2023260 2023278 TACAAATTGCCTCAGTTGC 58 NA Drosophila melanogaster 50 CG11814 FBgn0035296 FBtr0072855 3 1 1 80 3L 1951225 1951298 ATGGGATCTCAATGACTGG 58 1951163 1951181 GCCACATGTGTTATTGGAG 58 NA Drosophila melanogaster 50 CG5687 FBgn0035293 FBtr0072858 2 1 1 113 3L 1935544 1935626 CTCTATGTCATTCAGATGTGC 58 1935451 1935469 CACATAGATCAGGACCACG 59 NA Drosophila melanogaster 50 alphaCop FBgn0025725 FBtr0072811 3 1 2 108 3L 1644086 1644104 AGTGCCTCTTTACATTCCG 59 1643940 1644015 TTAAAGACCACCATACCTCC 58 NA Drosophila melanogaster 50 CG12099 FBgn0035232 FBtr0072829,FBtr0072828 2 2 2 94 3L 1556339 1556357 CTTGCCTTTGACTTGTCAG 58 1556209 1556283 GAATGTCCTCCTTAAAGAGCT 59 NA Drosophila melanogaster 50 CG13582 FBgn0035015 FBtr0072301 3 1 1 162 2R 20406543 20406562 CTATTCCGATCTGAAGTGGG 59 20407026 20407044 GTAATGTAGCTCCTTCCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG13582 FBgn0035015 FBtr0072301 1 1 1 161 2R 20406544 20406562 TATTCCGATCTGAAGTGGG 58 20407026 20407044 GTAATGTAGCTCCTTCCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG16786 FBgn0034974 FBtr0072248,FBtr0072247 3 2 2 93 2R 19971025 19971043 AACTGTCTATGGCTTCCTG 58 19971098 19971185 GGATTTAAGTTCAAAGGCTGG 59 NA Drosophila melanogaster 50 CG30179 FBgn0050179 FBtr0072182 3 1 1 88 2R 19964712 19964730 AGATGTACCACAGGAAGTG 58 19964782 19964800 GATATTGTCATCCGGTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Upf3 FBgn0034923 FBtr0072222,FBtr0072221 1 2 2 90 2R 19782127 19782202 TTAAGATTGTGATGCGGCA 59 19782055 19782073 TAATACGAGTCGTTCTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bgcn FBgn0004581 FBtr0072232 2 1 1 103 2R 19741207 19741281 TGAAATCTTAGATGCGTGTG 58 19741123 19741141 CCATAATCAAGTTGCCGAC 58 NA Drosophila melanogaster 50 CG34371 FBgn0085400 FBtr0112596 2 1 1 82 2R 19058172 19060020 ATCTCCTCACGATGTACAC 58 19058108 19058127 ATTCATGTCGAGGATAACCT 58 NA Drosophila melanogaster 50 jbug FBgn0028371 FBtr0071918,FBtr0071919,FBtr0071917 3 3 3 165 2R 18612084 18612102 TGGAGATAACGATTTCGGC 59 18611564 18611582 ATGCTAACCGTAATCGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11269 FBgn0034700 FBtr0071765 2 1 1 159 2R 18026528 18026546 TTCTTCTACGTCCAGTCAC 58 18026669 18026687 CAATGAAGACGAATCCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2921 FBgn0034689 FBtr0071800 2 1 1 163 2R 17962201 17962274 ACTTTACTGGCGAAGAACC 59 17962056 17962077 GTATGACTTCAGAAATACGCTG 59 NA Drosophila melanogaster 50 CG9304 FBgn0034674 FBtr0071726 2 1 1 108 2R 17862234 17862255 GTTCCTTTACATCTGGGATAGG 59 17862377 17862459 CATCATAAAGGAGGTGCGT 59 NA Drosophila melanogaster 50 CG30152 FBgn0034543 FBtr0086236 1 1 1 80 2R 16559350 16559628 CCAATGTCTCAGTTGTTCG 58 16559670 16559690 GTATACAGAGTCCAATAAGCG 58 NA Drosophila melanogaster 50 CG16799 FBgn0034538 FBtr0086249 3 1 1 188 2R 16541253 16541271 GACAAGACCTTCATTTCCA 57 16540897 16541050 GTCATTGGAGAAGTCTTCAC 58 NA Drosophila melanogaster 50 bl FBgn0015907 FBtr0086219,FBtr0086221,FBtr0086220 1 3 4 139 2R 16483156 16483268 GATTCCGAGCAGTATTGCT 59 16485963 16485983 CTATATCCGCCGATATTTGGA 59 NA Drosophila melanogaster 50 Elongin-C FBgn0023211 FBtr0086541,FBtr0086540 3 2 2 66 2R 15332849 15332868 AAGGTCTGCATGTACTTCAC 59 15332802 15332820 GGAATTCGGGTATTTCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10764 FBgn0034221 FBtr0086919 1 1 1 81 2R 13341608 13341626 ATGACTTCATTGCATCGGA 59 13341670 13341741 TGAACTCGAACTGTGTAGAC 59 NA Drosophila melanogaster 50 CG7997 FBgn0034117 FBtr0087172,FBtr0087171 2 2 2 98 2R 12229052 12229070 AATGTGCAGGATCTGTACG 59 12228913 12228991 GTAGAAAGTTACGCCATTGG 58 NA Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 2 5 7 81 2R 11836642 11836721 TTTGCTACGTGCTACTCTC 59 11836579 11836599 TCCGCTCTAGTTATATTCGAG 58 NA Drosophila melanogaster 50 GalNAc-T1 FBgn0034025 FBtr0087332,FBtr0087331 2 2 2 61 2R 11401756 11401906 GACTTCCATCCTTACAAATTCC 59 11401927 11401946 ATGCGGGCAGTATTAATACC 59 NA DesignRelaxed Drosophila melanogaster 50 CG12853 FBgn0040747 FBtr0087406 1 1 1 73 2R 10821197 10821215 AAGGGTGCTAAGAAAGGAG 58 10821252 10821270 TTCGATTCGGAAGTCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HPS FBgn0033973 FBtr0087449 1 1 1 60 2R 10744440 10744459 ATTACCTTAAGAAGGGCCAG 59 10744482 10744500 TACGAGTAATGGAATGCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10151 FBgn0033960 FBtr0087471,FBtr0087472,FBtr0087473 2 3 3 70 2R 10641377 10641492 GCAATGAGAATCCTTCTTCG 58 10641326 10641345 AAACGATTGTGTTGGATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AGO1 FBgn0026611 FBtr0087613,FBtr0087612,FBtr0087614 3 3 3 103 2R 9835755 9835773 TATCAGCTATGCCATACGT 57 9835604 9835688 ACCAGATGATATCTGGCAC 58 NA Drosophila melanogaster 50 CG34235 FBgn0085264 FBtr0112429 2 1 1 94 2R 9099234 9099316 ATAATCTCCGCTCTTTCGG 59 9099158 9099176 CAAATCAGGATGAGAAGCA 57 NA DesignNoJunction Drosophila melanogaster 50 Mdr49 FBgn0004512 FBtr0087801 2 1 1 80 2R 8832633 8832653 GACTTTCAGCTTAAGGAAGGA 59 8832508 8832593 TCTGGTTGAGTATCTGAACAG 59 NA Drosophila melanogaster 50 CG8594 FBgn0033755 FBtr0087826 1 1 1 91 2R 8460035 8460053 TAGGAACATCAACAGCAGC 59 8460108 8460210 CTTCGTAGTCCAAGCTCTC 59 NA Drosophila melanogaster 50 SmD3 FBgn0023167 FBtr0087986 3 1 1 61 2R 8056579 8056600 CAAGATCCGATTCCTTATACTG 58 8056622 8056640 TCTGCTTCTTGAACATCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vhl FBgn0041174 FBtr0088115 3 1 1 64 2R 7167595 7167613 GTTCCGGGATTACTACACG 59 7167641 7167659 GAATCGGCTGAAAGATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cag FBgn0017414 FBtr0088239 2 1 1 75 2R 6781292 6781368 CCAAGAGGTTTAACATTGGA 57 6781236 6781255 AACAGACCCTCTTTAATCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18004 FBgn0033566 FBtr0089729,FBtr0089728 2 2 3 81 2R 6773588 6773606 TATTGAGTCCGGAATGCAC 59 6773648 6773727 TCATTGGGATAACACTTAGAGG 59 NA Drosophila melanogaster 50 Prosbeta5 FBgn0029134 FBtr0088224 3 1 2 159 2R 6707587 6707607 GCTGAAATCTGCAAGATATCG 59 6707789 6707808 TCTGATTAAGGTTGTGCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Jra FBgn0001291 FBtr0088411,FBtr0088410 1 2 2 61 2R 5984793 5984813 GCTGCGAACTTAAGTATTCAG 59 5984836 5984854 GGTATGATCTGAATGGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lin FBgn0002552 FBtr0088651 2 1 1 60 2R 4803385 4803403 TGACCACAAGCTTATCGAC 59 4803427 4803445 TTGCACGTAAGAGTTCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8693 FBgn0033294 FBtr0088748 3 1 1 94 2R 4347435 4347454 TTCCGATGCCTATCATTACG 59 4347511 4347615 TGTCATGGTTACCGATCAC 59 NA Drosophila melanogaster 50 CG1707 FBgn0033162 FBtr0089013 2 1 1 263 2R 3283217 3283303 CAAGGACTTCCTCTTCCAG 59 3281431 3281450 TAATTCTGATCCGGATCCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG12835 FBgn0033142 FBtr0089040 2 1 1 71 2R 2995253 2995271 AAATCCCAAGGATACGGAG 58 2995306 2995324 TGGTTGAAGTAGCAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6a2 FBgn0000473 FBtr0086133 3 1 1 62 2R 2667872 2667890 CAGCTAACGTACGAATCCA 59 2667759 2667846 CAGGGTTTCTGAGATGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dream FBgn0033051 FBtr0086028 2 1 1 61 2R 1908911 1908988 AAATGCAATCCAAAGACCG 59 1908868 1908889 AACGTACTTAGAGGTAAGAGTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG40290 FBgn0058290 FBtr0111294 1 1 1 75 2R 493558 493576 GAAGAAGTTGAGCAACCAC 58 493615 493633 CACTTGGTCCTACTTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 p120ctn FBgn0015587 FBtr0111113,FBtr0111114 2 2 2 61 2R 494766 494785 CCAATTACGACAAACATCCC 59 494809 495865 TCCTTTAGATGACGATGGA 57 NA DesignNoJunction Drosophila melanogaster 50 CR9337 FBgn0032898 FBtr0081448 2 1 1 127 2L 20863226 20863244 ATCAACCCGATTAAGCGAG 59 20862939 20863011 GGTTTGCTGTACTCATAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10481 FBgn0032827 FBtr0081311,FBtr0081312 3 2 2 135 2L 19891949 19892067 GCGAGTTCTATCTTAGCCTG 59 19891833 19891853 AGAACGTATTTCTCGTACCAG 59 NA Drosophila melanogaster 50 CG17322 FBgn0027070 FBtr0081107,FBtr0081105,FBtr0081108,FBtr0081106 2 4 4 127 2L 18827246 18827517 CTATTAGCTTAGAGGACTTCGA 58 18827605 18827623 GATCTCAGTTAGGGCTCTG 58 NA Drosophila melanogaster 50 CG31805 FBgn0051805 FBtr0080958 1 1 1 82 2L 16898807 16898825 AAACAGGCGAGTATCAAGG 59 16898676 16898762 AAACTTTCGCTATCGAAGAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG33552 FBgn0053552 FBtr0091522 1 1 1 60 2L 16682858 16682876 AAAGAAGATCGCCGAAGAG 59 16682899 16682918 TCCGGTAACCTCATAATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31818 FBgn0051818 FBtr0080841 2 1 1 68 2L 16338726 16338745 GGAAATTCGGGAAGTAACTG 58 16338615 16338695 CAAATTGGCACCTGTATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31817 FBgn0028899 FBtr0080842 3 1 1 74 2L 16336230 16336308 GAGATCCCATAGACAAGCA 58 16336174 16336192 ATTTCAAAGGAACCACGGA 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)35Bg FBgn0001977 FBtr0080725 1 1 1 200 2L 15038226 15038244 AACTGATCGATGAGGAGGA 59 15037976 15038064 CGAGATAACAATTTCCACAGC 59 NA Drosophila melanogaster 50 pburs FBgn0032546 FBtr0080634 3 1 1 126 2L 14416992 14417068 TGAAAGAGTGCTACTGCTG 59 14416884 14416903 CGAAGACGTATATCCATGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6565 FBgn0032513 FBtr0080468 2 1 1 71 2L 13375132 13375212 CCTCCTTATACTCATACAAGGT 58 13375244 13375262 TTTGAACGTGGAGGAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ACXA FBgn0040510 FBtr0080415 2 1 1 80 2L 12924117 12924193 ATGAACTACAAGCTCAACCT 58 12924234 12924254 AAGCAGGATTATGATGGACTG 59 NA Drosophila melanogaster 50 SC35 FBgn0040286 FBtr0089899,FBtr0089898 2 2 2 176 2L 12432195 12432317 GAGTGCGAGATATGACTCG 59 12432037 12432058 CTCTACTTATTTACTCTGCCGA 59 NA InUTR Drosophila melanogaster 50 Or33a FBgn0026392 FBtr0080278 1 1 1 62 2L 11935226 11935320 AGATAATACGCCTACTTCGC 59 11935345 11935363 CACTAGAAAGGAACTGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16854 FBgn0032338 FBtr0080194 2 1 1 60 2L 11089193 11089213 GACAATACGTTTCCCAATCTC 59 11089233 11089253 GATTCAGTTCCTGATCATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12253 FBgn0026148 FBtr0080149 1 1 1 92 2L 10988974 10989059 CAAGCATTGATACGGAACAG 59 10989114 10989132 GATTGTTGTCATCTCCGGA 59 NA Drosophila melanogaster 50 dpr2 FBgn0053507 FBtr0091447 3 1 1 133 2L 10918849 10918867 GCCAATTTACTGGTATCGC 58 10918201 10918752 CAATGCGTAATCTGCTCTG 58 NA Drosophila melanogaster 50 CG5958 FBgn0031913 FBtr0079466 2 1 1 182 2L 7431234 7431252 TCGATGAAACAGGTGAAGG 59 7430847 7431090 GAAGTGCATCCTATTGTTCAG 59 NA Drosophila melanogaster 50 sip2 FBgn0031878 FBtr0079360,FBtr0079357,FBtr0079361,FBtr0079359,FBtr0079358 1 5 5 63 2L 6961828 6961910 TTCCGAAATCAAGCATGTG 58 6961783 6961801 AATTTGAGGTACCTTCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31646 FBgn0051646 FBtr0079114 1 1 1 96 2L 5641945 5645466 TCCCGAGAAAGATCTTCCA 59 5641867 5641885 CAAATTGTCGACTACGCAC 59 NA Drosophila melanogaster 50 Sr-CI FBgn0014033 FBtr0077467 2 1 1 111 2L 4122569 4122712 TAGGTTCAGAGCCAATTGC 59 4122785 4122805 GAATATCACCTGGAAGTCCTC 59 NA Drosophila melanogaster 50 CG3980 FBgn0031575 FBtr0077504,FBtr0077503 3 2 2 102 2L 3869048 3869122 ATCAACAGTTTGGATGGCT 59 3869185 3869206 TAAGACTCTCAATAGGATCGAC 58 NA Drosophila melanogaster 50 toc FBgn0015600 FBtr0112883,FBtr0110903,FBtr0077665,FBtr0077663,FBtr0077662,FBtr0077664 2 6 6 92 2L 3070721 3070831 AAAGGAGAAGGAAATCCAGC 59 3070648 3070666 TCTTTGTCATACGTCAGCC 59 NA Drosophila melanogaster 50 Taf10b FBgn0026324 FBtr0077735 3 1 1 73 2L 2767394 2767412 CTTGACCATGGAGGATCTG 59 2767339 2767359 ACTGACTATAGTCCACTTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31948 FBgn0051948 FBtr0077788 3 1 2 105 2L 2416372 2416446 TCTTGTGCAAGTCGTATCC 59 2416285 2416303 GAACTTCATTGGGCAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13950 FBgn0031289 FBtr0078018 3 1 1 241 2L 861248 861266 GAGTTCTCCATCTGCTTCC 59 861540 861560 TTGTAGTAGGTGAAGTACTGC 59 NA DesignNoJunction Drosophila melanogaster 50 tRNA:S2b:86A FBgn0011970 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG17162 FBgn0039944 FBtr0113724,FBtr0113726,FBtr0113723,FBtr0113725,FBtr0113722 2 5 5 60 XHet 66271 66289 GTGGATGTAGAGGACAGGA 59 66229 66247 GCCGATGAAATATTCCCTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14619 FBgn0031187 FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350 2 5 5 123 X 21868683 21868703 TTTATGAACTCGGTCATCCAG 59 21868788 21868866 GTTTGGCAAATTCGTGGAG 59 NA Drosophila melanogaster 50 Rrp45 FBgn0030789 FBtr0074355 3 1 1 275 X 16684003 16684021 ATAACGAGAGCAGTGAGAC 58 16683691 16683709 TACACGACTATCACAACGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 1 7 7 80 X 15717652 15717670 TATCACCGGCATCTATTCG 59 15717712 15717802 TTGCCGTATATCAACAGTCTC 59 NA Drosophila melanogaster 50 CG8974 FBgn0030693 FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186 1 5 5 210 X 15688455 15688537 GATCCACGTAACAAAGTTCC 58 15688199 15688217 GTTCATCCTCGTATTGCCT 59 NA DesignRelaxed Drosophila melanogaster 50 Yp2 FBgn0005391 FBtr0071424 1 1 1 69 X 9946192 9946210 CAACCTGAACACTTTGGTG 59 9946141 9946159 GAAGATGGTGACCTCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0232 FBgn0028341 FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407 3 6 6 85 X 9524046 9524066 GCCGTCGGATTATATTAATGC 59 9523916 9524001 TCTTTGGTAATGGACCTTGAG 59 NA Drosophila melanogaster 50 inx7 FBgn0027106 FBtr0071035,FBtr0071034 1 2 2 90 X 6886130 6886219 TGCTTCTACAGAAATGTCAC 57 6886059 6886078 CAATTACCGCCAATAATTCG 57 NA Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 2 8 8 173 X 6579447 6579465 ACAACGTCTTCCACTACAG 59 6579602 6579683 AATTCGCTGGAGAAGTCAC 59 NA Drosophila melanogaster 50 CG33080 FBgn0053080 FBtr0070845,FBtr0070844 3 2 2 141 X 5604995 5605517 TATTTCTGATCGGCTATGCC 59 5604873 5604892 AATTGACCCGATATCACCTC 59 NA Drosophila melanogaster 50 CG40096 FBgn0058096 FBtr0113791 1 1 1 142 U 181438 181456 CTCGAGTCAAGTTCCAGAG 59 181624 181642 CAAACCTCGTGTAAGGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 sima FBgn0015542 FBtr0114597 2 1 2 95 3R 25907960 25907978 CTACTGCTGGATTCTTAGC 57 25908036 25945862 GGAATCGTCATCCTTATGAC 57 NA Drosophila melanogaster 50 CG7816 FBgn0039714 FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921 3 6 6 81 3R 25690544 25690624 GGGCGATAATCAAGATCCT 58 25690481 25690500 GATCGTGAAGATCAGTATGC 58 NA Drosophila melanogaster 50 CG14523 FBgn0039612 FBtr0085349 1 1 1 60 3R 24704571 24704590 CGAGGGAACAACTACTAGAG 58 24704530 24704549 TCGGCATATCCATTGATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14065 FBgn0039579 FBtr0085280 3 1 1 151 3R 24160033 24160051 CTGAAGAGCTTCAAGTCGT 59 24159900 24159918 AATTCCGATGAGTTCTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17781 FBgn0039196 FBtr0113279,FBtr0084623 1 2 2 240 3R 20199970 20199988 AAATGCAAATGGACAGCAG 59 20199683 20199701 TATGTGATGTTTGGGTGGT 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Gr94a FBgn0041225 FBtr0084346 1 1 1 60 3R 18878200 18878218 ATTCTGTCGCTCATATGCC 59 18878238 18878260 CATAGTACAGACTGTAGAAACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7907 FBgn0038887 FBtr0113262,FBtr0113261 1 2 2 81 3R 17231539 17231557 TGTCTTCATCTGGGATCCA 59 17231600 17231709 CAACCAAATCCTTGAAGACAG 59 NA Drosophila melanogaster 50 tin FBgn0004110 FBtr0084086 1 1 1 288 3R 17206636 17206654 ATCTACGGTTCAGATGAGG 58 17207331 17207352 GATTCTGGAACCAAATCTTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3734 FBgn0038700 FBtr0083755 1 1 1 80 3R 15215340 15215421 GCCACTATTATTCCAGAGCA 59 15215464 15215482 GGAAGCTCTCATTTCAGCA 59 NA Drosophila melanogaster 50 Rpb4 FBgn0053520 FBtr0100273,FBtr0100275 2 2 5 95 3R 14079507 14079585 TGAGATTGGAGATCTGCCT 59 14079430 14079448 TAGTCCAAATACGACTGCG 59 NA Drosophila melanogaster 50 CG14315 FBgn0038568 FBtr0083547 1 1 1 60 3R 13984917 13984938 GGTGTCCAGTGTTATCTATCTG 59 13984959 13984977 ATTCGACAGAAGGACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 2 15 15 121 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811941 7812031 TTCTTCAGGATGTTGGAGG 58 NA Drosophila melanogaster 50 CG17187 FBgn0037882 FBtr0082365 1 1 1 77 3R 7057294 7057312 ACAAGAATCCGGACAATCC 59 7057235 7057253 ATTCATCCGTGAGGATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Invadolysin FBgn0086359 FBtr0082181 1 1 1 80 3R 5983497 5983578 AGAGAATAATCCCAGGCCT 59 5983622 5983640 GATTCGCTGTGATCAAAGC 59 NA Drosophila melanogaster 50 Dh FBgn0012344 FBtr0112870 2 1 2 237 3R 5466244 5469213 CCGTAATCGCTATACTCCA 58 5469414 5472752 CAGAAAGTCATCCTGTGAG 57 NA DesignRelaxed Drosophila melanogaster 50 CG2781 FBgn0037534 FBtr0081823 2 1 1 81 3R 3809807 3810523 ACATCGTAAAGGTACTCGG 58 3809744 3809763 GCATTGTAGACGATCAAGAC 58 NA Drosophila melanogaster 50 Sp7 FBgn0037515 FBtr0081740,FBtr0081742,FBtr0081743 1 3 4 89 3R 3586916 3586934 CAACACGCAAAGTAGTTGG 59 3586987 3587737 TCCTACAACTTCCTTGTGC 59 NA Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0100238,FBtr0100237,FBtr0078257 2 3 10 189 3L 20809758 20809776 ACATGTCCTACATGATGGC 59 20809928 20825959 AGTTTGACTTGTTCCCTCTC 59 NA InUTR Drosophila melanogaster 50 Shal FBgn0005564 FBtr0074973 3 1 2 81 3L 19565173 19565402 GAGAAGACAACGATGTAGC 57 19565110 19565128 CTTTCCTAATGAGCTCGTG 57 NA InUTR Drosophila melanogaster 50 CG32174 FBgn0052174 FBtr0075227 1 1 1 82 3L 17422690 17422963 AAAGATAATCAAGTCACGCC 58 17422627 17422645 TATCGCGTCATCAAGTAGG 58 NA Drosophila melanogaster 50 CG8745 FBgn0036381 FBtr0075801 3 1 1 103 3L 13855093 13855111 CTTCTTCGTCAATTCCGGA 59 13854888 13855026 CATGATAGGCATGGTCGAG 59 NA DesignRelaxed Drosophila melanogaster 50 MTF-1 FBgn0040305 FBtr0113323,FBtr0113322,FBtr0076459 1 3 5 105 3L 9427561 9427579 AATTGGAAATCTGCGAACG 59 9429006 9429024 CTTCAGGCTGTAGGAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Gug FBgn0010825 FBtr0076616,FBtr0076619,FBtr0076617,FBtr0076618 3 4 4 80 3L 8463572 8463862 TCAGTACTTTAGACAACGGC 59 8463903 8463923 CCGAGTATTGTCTTTGTTCAG 58 NA InUTR Drosophila melanogaster 50 CG33523 FBgn0053523 FBtr0091478,FBtr0091477,FBtr0091475 1 3 4 93 3L 5921732 5921813 ACGTACAAGATCCAAACCA 58 5921870 5921888 ATATGTTGATGGTGGCCTC 59 NA Drosophila melanogaster 50 CG5339 FBgn0034925 FBtr0072220 2 1 1 233 2R 19785292 19785310 CATACTGTCCGAGGAACAG 59 19785020 19785040 GTGATTACGTTGAAGTTCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Obp59a FBgn0034766 FBtr0071869,FBtr0071870 2 2 2 75 2R 18590240 18590258 CTGCTGATTTGTTTGAGCT 58 18590297 18590315 CTTCACTTAGTCCCTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 3 8 8 99 2R 14032395 14032483 AGGAAAGAATTCTGAGAAGC 57 14032544 14032563 CTCAATCATCGGATACAGAC 57 NA Drosophila melanogaster 50 CG10734 FBgn0034082 FBtr0087250 2 1 1 60 2R 12045572 12045592 CGATGAACAGAAGACTTTCAC 59 12045532 12045550 ATAATCGTCGACCTTGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13349 FBgn0033886 FBtr0087611,FBtr0114495,FBtr0114494,FBtr0087610,FBtr0114493 1 5 5 60 2R 9846355 9846375 GATCAAGCAATTCGAGTTGTC 59 9846315 9846334 CTCTAGATTGCCAGAGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 3 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421093 TAGTAAGGTAGCAAAGTAGGGA 59 NA Drosophila melanogaster 50 CG1513 FBgn0033463 FBtr0088450 1 1 1 91 2R 5772529 5772547 CATAACATTGGTGAGGGTG 58 5772395 5772474 GTAAGAATAGACCTGCCGT 58 NA Drosophila melanogaster 50 CG30373 FBgn0050373 FBtr0088806 1 1 1 60 2R 4051711 4051729 CAACTTGTACGAGCATGTC 58 4051669 4051689 GTACCTGTAGTTGACAGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012 1 6 7 106 2R 3293620 3293714 AAATATGACTTCAAGCCAGC 58 3287508 3293552 CCGGAACTTTCAGAATTTGG 59 NA Drosophila melanogaster 50 CG33492 FBgn0040849 FBtr0089605 3 1 1 128 2R 908327 908345 TGACAATTCCTAGCATGGA 58 908435 908679 CAAAGTGACTTACCTCATCAG 58 NA Drosophila melanogaster 50 CG10186 FBgn0032797 FBtr0081280 1 1 2 101 2L 19510642 19510660 GATTGTCTATCCGGGAACC 59 19510126 19510577 TCTGTGTAGTTCTTGTGCG 59 NA Drosophila melanogaster 50 Socs36E FBgn0041184 FBtr0081041,FBtr0081040 1 2 2 280 2L 18141991 18142009 AAGTACGTTACAACTGCAC 57 18141236 18141747 TATTGCTTCTGGAAACTGG 57 NA DesignRelaxed Drosophila melanogaster 50 B4 FBgn0023407 FBtr0080514,FBtr0080513 1 2 2 121 2L 13535017 13546919 CTCTTAAAGGCTGCATGGA 59 13534914 13534932 TCTTTGTTGACTTCGTGGA 59 NA InUTR Drosophila melanogaster 50 Ripalpha FBgn0032189 FBtr0079962 2 1 1 119 2L 10200228 10200302 GAAATCCAATTGTCCGAACTC 59 10200129 10200147 ATACCACTCGTTGACATCG 59 NA Drosophila melanogaster 50 capu FBgn0000256 FBtr0077511,FBtr0077513,FBtr0077512,FBtr0077510 3 4 4 86 2L 3879058 3884044 AGTTCGAAGGTCAAATGCT 59 3878990 3879009 ATTCCTGATTAGCATCACCG 59 NA Drosophila melanogaster 50 CG31958 FBgn0051958 FBtr0077495 3 1 1 67 2L 3786137 3786155 GAGATGATACGCGAGTACG 59 3786185 3786204 ATCATGTTGTTGGACTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8675 FBgn0030834 FBtr0074446 3 1 1 263 X 17142876 17142894 AAGAAGCAAGAGAAGGACC 59 17142631 17142649 TTATTTCGCCTTAGCAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18292 FBgn0030269 FBtr0073437 2 1 1 84 X 11032626 11032644 CCTGAATCTGAGCTCATCG 59 11032692 11032710 GATATTGGCCGAAGTTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15208 FBgn0030247 FBtr0073383 2 1 1 60 X 10794656 10794676 TGAATGACATAAGTCTCTGCC 59 10794698 10794716 TTCATGCTAAGCGAAAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fs(1)h FBgn0004656 FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119 3 5 5 119 X 7944306 7944477 CAAGAAAGATGAGTCCGCT 59 7944205 7944223 TCACTCGAACTGCTATCAC 59 NA Drosophila melanogaster 50 l(1)G0045 FBgn0026702 FBtr0070782 2 1 1 71 X 5518373 5518391 ATTGAGGGAACTGGATTCG 59 5518426 5518511 ACTCCCGCTAATGTATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nmdar2 FBgn0053513 FBtr0070288,FBtr0091454,FBtr0091453 1 3 3 130 X 1385972 1386200 GGGAAGAGATTGGAGTGTG 59 1385860 1385881 GAGGAATGTGATCTTCAAATGG 59 NA Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089210,FBtr0089215,FBtr0089211,FBtr0089213 3 7 7 83 4 1079778 1079796 TAACCAGACAACGAATCCT 58 1079117 1079732 TATGTAGAAGAGCTCTTGCC 58 NA Drosophila melanogaster 50 CG31104 FBgn0051104 FBtr0084825 1 1 1 80 3R 21112346 21112364 AAAGAGAATTGTGGGAGCA 59 21112471 21112491 CCACCATTATAGGAAGAAAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG5510 FBgn0039160 FBtr0084576 2 1 1 94 3R 19993858 19994208 CTTGAACGTAAATCACGATGAG 59 19993785 19993803 TGGGATCTTCTTTGTGCTC 59 NA Drosophila melanogaster 50 CG14326 FBgn0038528 FBtr0083467 1 1 1 60 3R 13444858 13444941 GTCAAGATTAGCTGTTCGC 58 13444965 13444983 ATTGAGCGTATGAACAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ranbp9 FBgn0037894 FBtr0082386 2 1 1 86 3R 7239747 7239824 TTCTCCTGGCTATTAACGAC 59 7239873 7239891 CATCAGCCACACTAAAGTG 58 NA Drosophila melanogaster 50 CG14606 FBgn0037485 FBtr0081603 3 1 1 81 3R 3042364 3042383 AATCTTTGGACTGCTACTCG 59 3042224 3042323 GATCCAGTAGATCATATTGGGT 58 NA Drosophila melanogaster 50 CG31522 FBgn0051522 FBtr0078941,FBtr0078942,FBtr0078939 3 3 4 82 3R 272538 273434 ACTCACATAGTGACTCGAG 58 272474 272492 GACATATGTGAGGCAAACG 58 NA Drosophila melanogaster 50 CG18281 FBgn0037003 FBtr0078206 2 1 1 73 3L 20494085 20494106 GGATTATTACTCCTGCTATTGC 58 20494140 20494158 CTGCTTAACCAGTACATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eig71Ei FBgn0014849 FBtr0075574 2 1 1 88 3L 15653060 15653078 CTTTAACGACTACTGTCGC 58 15653130 15653209 GCACAGTAGATAAACAGGC 58 NA Drosophila melanogaster 50 CG7272 FBgn0036501 FBtr0075548 1 1 1 84 3L 15496315 15496336 CATCTCCATCAAGAATACTGTG 58 15496446 15496464 AATAGCGAACATGGAGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13481 FBgn0036421 FBtr0113170 1 1 1 60 3L 14362622 14362640 TGCTGGATTCTGATGTCAG 59 14362580 14362598 TTGTTGTTAAGGACCTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32260 FBgn0052260 FBtr0073214 1 1 1 192 3L 4145035 4145126 ATTGCCAGGTAACATCTCG 59 4145282 4145300 AATGGACTTGTAGCTCTGC 59 NA Drosophila melanogaster 50 CG13908 FBgn0035178 FBtr0113121 2 1 2 203 3L 990849 990867 ACTATCATCACGCCAACTC 59 991034 991103 GTAGGGTGAATTTCTTGCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG13575 FBgn0034996 FBtr0072264 1 1 1 60 2R 20143638 20143656 GGAAATGGTTCACATGTGC 59 20143829 20143849 CAGTATGACGTAGTAGAGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10307 FBgn0034655 FBtr0071671 2 1 1 67 2R 17577356 17577432 CTACAGCTAATGGCTTTGC 58 17577463 17577481 CAAATATTGGCGGGATCTG 58 NA DesignNoJunction Drosophila melanogaster 50 Hil FBgn0050147 FBtr0086256,FBtr0086255 2 2 2 96 2R 16502072 16502090 GCTTCAAATGCGTACACTG 59 16500960 16502013 TGTGAACTGCAATAGACCTC 59 NA Drosophila melanogaster 50 CG10051 FBgn0034437 FBtr0086521 1 1 1 120 2R 15254197 15254278 GAATGGAAAGACTCTGCTC 57 15254361 15254380 GGTTGTACTCATATCGTACC 57 NA Drosophila melanogaster 50 CG15609 FBgn0034180 FBtr0114626,FBtr0114629,FBtr0087019,FBtr0114627,FBtr0114628,FBtr0114625 3 6 6 91 2R 12899519 12899538 TTAAGGTTACCAACCTGACG 59 12899312 12899465 AGACATGTCAATGAGCTCC 59 NA Drosophila melanogaster 50 CG8299 FBgn0034052 FBtr0087291 1 1 1 76 2R 11828676 11828694 AAGGTCAGCAAACTGATCC 59 11828618 11828636 CGAGTGATGATCAAACCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fus FBgn0023441 FBtr0087347,FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087348,FBtr0087343 3 6 6 115 2R 11550675 11550755 TATGGTTATCAATGCACAGG 57 11550579 11550598 TGCCGAACATCATATAATGG 57 NA DesignNoJunction Drosophila melanogaster 50 Or49a FBgn0033727 FBtr0087918 2 1 1 63 2R 8281979 8281997 AGTTCTACGTTGTCAGCTC 59 8282022 8282096 GCCTTGGCTAAATTTGTACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12918 FBgn0033477 FBtr0088433 2 1 1 258 2R 5938843 5939055 ACTGATGGAGAAGATCTGC 58 5938603 5938624 GCAGATCTTGATGTCTAAATCG 59 NA DesignNoJunction Drosophila melanogaster 50 tos FBgn0015553 FBtr0081131 2 1 1 68 2L 18681088 18681161 TCTTGAGGTAGATGACGAC 58 18681038 18681057 ATAAACATGTGCCTGAAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14024 FBgn0031697 FBtr0079082 3 1 1 185 2L 5313078 5313276 TATATTAGCTGGCTACGATGTG 59 5312914 5312932 TCCAGTTTGTTGCGATAGG 59 NA Drosophila melanogaster 50 cbt FBgn0043364 FBtr0078083 2 1 2 194 2L 478201 479422 AAACAAGTTGGAAATCGTCG 59 478026 478044 CTCATAGCAGGTTGTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR31334 FBgn0051334 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 ban FBgn0064191 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi28S-3316b FBgn0082971 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30251 FBgn0050251 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:N5:42Aa FBgn0011931 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:P:35Bc FBgn0028910 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 kl-3 FBgn0001314 FBtr0113756 2 1 1 124 YHet 54719 62665 TTCAGTATCCGCAATACAC 57 62753 62771 CTTTAAGGGCAGTACTTCC 57 NA Drosophila melanogaster 50 CG40485 FBgn0069973 FBtr0111190,FBtr0111189 1 2 2 60 X 22363899 22363920 GACATTCTTATCAATAACGCCG 59 22363860 22363878 CTACCGACATAGTCAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34145 FBgn0083981 FBtr0110992 1 1 1 65 X 20464604 20468113 CAATTGTCAGAGTGCAAGC 59 20464557 20464575 TAGGGTGAATATGCTGAGG 58 NA DesignRelaxed Drosophila melanogaster 50 Shawn FBgn0031039 FBtr0074738,FBtr0074737,FBtr0074739 1 3 3 116 X 19508311 19508329 TGTTTCCTCTACTGCAACG 59 19508409 19508486 GATGAATGCGTCAATGGTG 59 NA Nonspecific Drosophila melanogaster 50 CG14218 FBgn0031031 FBtr0074770 2 1 1 76 X 19474949 19474967 ATACCTTCTTTAGGTCGCG 59 19474891 19474909 GGAGTCAACTAAGTCTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tao-1 FBgn0031030 FBtr0074773,FBtr0074771,FBtr0074774,FBtr0074772 3 4 4 88 X 19465920 19466010 CTCGAGAATAAGATGGACG 57 19465850 19465869 TCTTTAGTATGCTTCTCGTG 57 NA Drosophila melanogaster 50 CG7349 FBgn0030975 FBtr0074648 3 1 1 117 X 18789854 18789872 ATCATACTGGTGGAACAGC 59 18790008 18790027 GTCCTTGAGAAAGTCCAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32548 FBgn0052548 FBtr0074569,FBtr0074568 3 2 2 85 X 18330497 18330515 CCTTCCTCGATTATCAGCG 59 18330430 18330450 ATCGGGATAGTAGTGGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6106 FBgn0030914 FBtr0074553 2 1 1 241 X 18253515 18253533 TAAACGAATCTCAGCTGGA 58 18254113 18254131 GTTGAGGATGTGTATGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32494 FBgn0052494 FBtr0074506 1 1 1 76 X 17894606 17894624 CAATATTTGTCGCCACAGC 59 17894664 17894682 TTTACTGCCTAGTCGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ppk23 FBgn0030844 FBtr0112998,FBtr0100574,FBtr0074491 3 3 3 125 X 17462376 17462395 TTCAACAGTCGTTTCAAGTC 58 17462088 17462223 GATAAAGATACGTGAAGTGCTG 59 NA Drosophila melanogaster 50 CG4949 FBgn0030813 FBtr0074380,FBtr0074381 1 2 2 128 X 16973406 16973424 ATCCTTTGTGAATTACCGC 58 16973516 16973534 ATAAGCAGCTTGAACTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4756 FBgn0030788 FBtr0074331 3 1 1 106 X 16682326 16682344 ACTTCAAGGTCCAAACGAG 59 16682636 16682656 GAATGTGATGATCTCCTTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3632 FBgn0030735 FBtr0112988,FBtr0112990,FBtr0112991,FBtr0112989 3 4 4 99 X 16196438 16196950 CATTGTCGATCTTGTGGAG 58 16197013 16197031 ATCCACATAGCCTAACTGG 58 NA Drosophila melanogaster 50 CG8974 FBgn0030693 FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186 3 5 5 212 X 15688455 15688537 GATCCACGTAACAAAGTTCC 58 15688197 15688215 CTGTTCATCCTCGTATTGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG6340 FBgn0030648 FBtr0074039 1 1 4 157 X 15377389 15377407 AGAAGACAAAGCCGATGTC 59 15379229 15379247 CTTCTTGTCCTTGTCCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Ste:CG33237 FBgn0053237 FBtr0073874 1 1 1 60 X 13953959 13953978 GTATTTCAGCGAGATACTGG 57 13953918 13953936 CAAGCCAGAGGAACTATCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1640 FBgn0030478 FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769 2 6 6 83 X 13268114 13268132 ATTCAACCGTTAGACGTCC 59 13268315 13268334 TATGTTATCCAGTGTGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 IP3K2 FBgn0085388 FBtr0112575,FBtr0112573,FBtr0112574 2 3 3 80 X 13221585 13221603 TATGTGCCCGTTTACAAGG 59 13221715 13221733 ATAGTCACTGAGCAGATCC 58 NA DesignNoJunction Drosophila melanogaster 50 mew FBgn0004456 FBtr0073731,FBtr0073732 3 2 2 83 X 13109890 13109967 TCACAATAACATAGAGGTGGAG 59 13109828 13109846 ATAATCAGCCACGGTATCG 59 NA Drosophila melanogaster 50 CG32645 FBgn0052645 FBtr0073725 2 1 1 60 X 13044432 13044451 ACAAGGAGTTCAACATTTGG 58 13044473 13044997 ATGCTAGATACCACGATCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG2200 FBgn0030447 FBtr0073721 3 1 1 80 X 12988687 12988706 CTGGAGGATCTCTTCAAGAG 58 12988848 12988866 AGTGTACTTGTCGTGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3812 FBgn0030421 FBtr0073689,FBtr0073688 1 2 2 72 X 12663817 12663835 CATCATTGTGGCCAATCAC 59 12663961 12663979 CTTGTTCATCACATGCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15927 FBgn0030389 FBtr0073647 1 1 1 60 X 12349186 12349206 TAACTTGATCGATGACGATGG 59 12349228 12349246 CTTCTGTTCGTTGTGAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10353 FBgn0030349 FBtr0114452 1 1 2 87 X 11777191 11777211 CGTCTGTTAAGAACTAGTAGC 57 11775926 11777144 GTCTGTATGTCCTTGATTTCC 58 NA Drosophila melanogaster 50 Karl FBgn0030334 FBtr0073556,FBtr0073557 2 2 2 82 X 11684958 11684976 CATCCACAGAGGAACTTCC 59 11685019 11685105 GTTCATCGTTATATGCTGATCC 59 NA Drosophila melanogaster 50 CG2371 FBgn0030323 FBtr0073533,FBtr0073532,FBtr0073534 1 3 3 63 X 11571813 11571831 GCGAGGATATCAACATCGA 59 11571768 11571787 CTCTCGAACTGATTGTACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32666 FBgn0052666 FBtr0073507,FBtr0073508 2 2 2 126 X 11445268 11445287 GAGACCTTCCTCAACATCTC 59 11445376 11445818 CATTCATGCGATCGTTTGG 59 NA Drosophila melanogaster 50 CG11750 FBgn0030294 FBtr0073456 2 1 1 174 X 11253424 11253442 GCTAGAGGGCTACTATCTG 57 11253646 11253664 GAAATCAAAGTCGTTGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1545 FBgn0030259 FBtr0073395 2 1 1 228 X 10953389 10953408 CAACCATAACTGCAATACAC 57 10951822 10952404 CAGTACGGATAAATTGGCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG15252 FBgn0030167 FBtr0112970 1 1 2 111 X 9873014 9873091 TTTATTTGGACCTGGAGGC 59 9872921 9872939 ATATTGTCCCAACACGAGG 59 NA Drosophila melanogaster 50 CG1354 FBgn0030151 FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386 1 4 4 96 X 9674840 9674858 CCGAATACGATTCGATGCT 59 9674918 9675202 AAGGCCTCAATATCATGGG 59 NA Drosophila melanogaster 50 CG15370 FBgn0030107 FBtr0071310 3 1 1 60 X 9120524 9120542 GATAGCTACAACGTGGGTC 59 9120566 9120584 CACTGTACTGGTGATAGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33181 FBgn0053181 FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451 1 5 5 80 X 8408690 8409225 CCTCTGCATAAGTGGTCTG 59 8409269 8409287 ATCGGTTGAAACACTACGA 58 NA Drosophila melanogaster 50 CG15336 FBgn0030009 FBtr0071156 3 1 1 61 X 8042078 8042097 GATAATCGGCGACTTATGTG 58 8042121 8042139 TGCAGATTCCAATAGATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Marf FBgn0029870 FBtr0070909,FBtr0070910 1 2 3 124 X 6263370 6263389 TGGAGTTTAAGTTCAGCTGG 59 6263476 6263563 TACGCTGTGTCCAATACTG 59 NA Drosophila melanogaster 50 Act5C FBgn0000042 FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822 1 4 4 111 X 5797605 5797623 AGGATCTGTATGCCAACAC 59 5797698 5797716 TTGATCTTCATGGTCGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0060 FBgn0027321 FBtr0070842,FBtr0070841 3 2 2 60 X 5637422 5637441 CCATCAGGAGATCATACTGC 59 5637381 5637401 CTCCTTAGTAAACTTTGTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3309 FBgn0029756 FBtr0070798 1 1 1 60 X 5222847 5222865 TGGTTACTTCCAGAAGAGC 58 5222805 5222825 GTAGTACAGATTGAAGAACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 torp4a FBgn0025615 FBtr0070690 1 1 1 60 X 4543356 4543377 GCAGATGCTATGTATTTGAAGG 59 4543317 4543335 CTTGTCCGAGATACTTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12691 FBgn0029701 FBtr0070646 2 1 1 60 X 4160359 4160377 AGATCACAGTAAGCCTCCA 59 4160401 4160419 CGATAGTTCTTCACTCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15571 FBgn0029696 FBtr0070664 3 1 1 60 X 4111093 4111114 AACATCTACTAACTCCACATCG 59 4111054 4111072 TGTGGAATTCAAACTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2941 FBgn0029686 FBtr0070613 3 1 1 121 X 3833176 3833253 TTCCTAGGCACTGAATTCC 58 3833338 3833356 AATTTGAGAAAGGAGCGTG 58 NA Nonspecific Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 1 13 13 80 X 2567070 2567088 ATGGAGGGTAATCACACCT 59 2567131 2567221 CTGTATTGAGAGCTCATGCT 59 NA Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 3 13 13 81 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567131 2567221 CTGTATTGAGAGCTCATGCT 59 NA Drosophila melanogaster 50 CG4199 FBgn0025628 FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333 1 4 6 108 X 1965424 1965442 CAAGGAGTACAAGACCACG 59 1962398 1962416 CATGGTTGTACTGGGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 Actn FBgn0000667 FBtr0070343,FBtr0070345 2 2 3 81 X 1924300 1924320 CTGGAGAATCTTAATACTGCC 57 1923951 1924258 TGATCAAATCATCTGGATCC 57 NA Drosophila melanogaster 50 arm FBgn0000117 FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988 3 4 5 93 X 1787500 1787518 AGAAGAAGCATATGAGGGC 59 1786142 1787446 AGTATCATATCCTTGCTGATGG 59 NA Drosophila melanogaster 50 CG3056 FBgn0024987 FBtr0070215,FBtr0070214 1 2 2 105 X 1265711 1265729 CAATTACTTGCCACAGGAC 58 1265798 1265956 ATATCCGGTCTTGAAGTCG 58 NA Drosophila melanogaster 50 Tsp2A FBgn0024361 FBtr0070211 3 1 1 60 X 1241733 1241751 TCGGAGTATACGTACTCGA 58 1241775 1241793 CGCAACAACCTATGTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14626 FBgn0040360 FBtr0070200 1 1 1 82 X 1081152 1081894 CTCTATGTTGGTCCCACAG 59 1081940 1081958 AATGGAGTTGCAGAAGAGG 59 NA Drosophila melanogaster 50 CG18273 FBgn0029525 FBtr0070094 2 1 1 94 X 378404 378422 AGGACAATGGAAAGCAGAG 59 378265 378346 ATCGCGATAGTTCAACGAG 59 NA Drosophila melanogaster 50 cin FBgn0000316 FBtr0070064,FBtr0070065 2 2 2 81 X 150606 150624 TATGCCATGAAGTCCACTG 59 150666 150807 GCAAAGAATTAGGTGAATCTCC 59 NA Drosophila melanogaster 50 CG40682 FBgn0085508 FBtr0113921 1 1 1 139 U 5709303 5709321 GAAGTTATCCGAGGAGCAG 59 5709424 5709442 GCTTATCTTGTTCGGTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40196 FBgn0058196 FBtr0113830,FBtr0113829,FBtr0113831 2 3 3 120 U 1092307 1092325 CAGATCTAAGTTGCGATCC 57 1092152 1092224 TAAAGAGAATTCACTGCTCG 57 NA Drosophila melanogaster 50 zfh2 FBgn0004607 FBtr0089070 2 1 1 90 4 558305 558324 GAAGTCGTTTCTGAAGATGC 59 558375 559172 CACCTATAACGGTGATATGGT 59 NA Drosophila melanogaster 50 Asator FBgn0039908 FBtr0089107 2 1 3 80 4 502324 508433 CTACGAGTAGAGGAAACGAC 59 502263 502282 GATCTTGTTTGGAAGAAGGC 59 NA Drosophila melanogaster 50 bip2 FBgn0026262 FBtr0089110 2 1 1 82 4 483116 483690 GATTCTCCTGTTACTGATTCTG 58 483055 483073 TTGCAGTAGTTTCGATCCA 58 NA Drosophila melanogaster 50 Syt7 FBgn0039900 FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0089139,FBtr0114475 3 6 6 140 4 302454 302472 CTGCAAAGGATAAATGCGG 59 301146 302352 ACACCTTTACGTATGGATCAG 59 NA Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451 1 4 8 94 4 162671 162692 GCCGCTTAGTTCATTAATATCC 59 162747 162837 GATGAACCCAACAAGTCAC 58 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156 3 9 10 81 4 103362 106346 TCCTAAGATGGGCTTAACTC 58 106387 106408 CATATCTGAACTTAGCATTGGG 58 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 1 14 14 90 3R 27691897 27691915 ATACTGCACCAGATCTTCC 58 27691743 27691843 GATATTGGATGAGGGCCTG 59 NA Drosophila melanogaster 50 CG1971 FBgn0039881 FBtr0085847,FBtr0085848 2 2 2 61 3R 27631893 27631912 GGCTTTCTAGAGAAGATTGG 57 27631936 27631954 AAGAGCTGACTTCCTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CstF-50 FBgn0039867 FBtr0085866,FBtr0085865 2 2 2 61 3R 27561810 27561828 ACTTGCGTGAAATATTCGC 59 27561767 27561785 ATGTCACCATCATAGCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12054 FBgn0039831 FBtr0113312 2 1 2 63 3R 27052788 27054424 AACACTGCAACAGAAACCT 59 27054451 27054469 TACTGTTGGGATTGCTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 PH4alphaNE1 FBgn0039780 FBtr0085688 2 1 1 115 3R 26324845 26324863 GAGAACTACCTGACCAACC 59 26324690 26324769 GCATTGAAATTCATCTCCTCAG 59 NA Drosophila melanogaster 50 Mlc2 FBgn0002773 FBtr0089747 1 1 2 253 3R 25999491 25999509 AAGAAGACCAAGGAAGAGG 58 25999097 25999115 ATAATACCGTCCTTGTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 RpL32 FBgn0002626 FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555 2 4 5 61 3R 25871413 25871431 CGGATCGATATGCTAAGCT 59 25871308 25871326 CACTCTGTTGTCGATACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14516 FBgn0039640 FBtr0085382,FBtr0085383 3 2 2 95 3R 24969481 24969502 CAAGGGTTCAACTATTATTCGC 59 24969558 24969639 TTGTAAGCCATTTCCTGCA 59 NA Drosophila melanogaster 50 CG14260 FBgn0039504 FBtr0085157 1 1 1 69 3R 23091399 23091417 AGAACAAGCGAGTGATCAG 59 23091450 23091468 TAGATGTAGAGGAGCAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14252 FBgn0039462 FBtr0085067 1 1 1 60 3R 22771842 22771861 AATGGAAGGACTATACGCAG 59 22771944 22771963 ATATAAACAGAAGAGCGCGT 59 NA DesignNoJunction Drosophila melanogaster 50 m2 FBgn0002592 FBtr0084981 3 1 1 177 3R 21842722 21842740 CACATTGATTAGCAGCGTG 59 21842563 21842582 CAGATCCCAGAGATTACTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bai FBgn0045866 FBtr0084758 1 1 1 60 3R 20865520 20865541 GCTTTATATCCAAAGTTCCTGC 59 20865626 20865644 GTCAAGAGCGATACTTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG7016 FBgn0039238 FBtr0084707 3 1 1 71 3R 20689450 20689468 AATGAGTCTAGCACCACTC 58 20689503 20689521 CTCTGGCTTAGGTGTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Miro FBgn0039140 FBtr0084596,FBtr0084595 3 2 2 129 3R 19861354 19861372 AACTGTATACCAAGCTGGC 59 19860659 19860678 ATAAATCCCAGCATGGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 ofs FBgn0039122 FBtr0089623 3 1 1 95 3R 19639802 19639820 CAAGGAGCAATTGACAAGC 59 19639527 19639745 TTGATGTCAGATTCAGGATCG 59 NA Drosophila melanogaster 50 Plip FBgn0039111 FBtr0084454,FBtr0084453 2 2 2 111 3R 19584916 19584934 CTAAGTTCCTCCTACCAGC 58 19585008 19585089 ATCCGTTCTTCATCATGAGG 59 NA Drosophila melanogaster 50 CG34289 FBgn0085318 FBtr0112485 1 1 1 68 3R 19332963 19333162 GATGAACAGAGATATCCGC 57 19332913 19332931 ATACTTCTTTAAGCACGCC 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG4704 FBgn0039029 FBtr0084314 1 1 1 60 3R 18670480 18670501 TACGGATCAGTTTCAGAATCTC 59 18670385 18670405 GAAGTCCAATTCAGAGATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 loco FBgn0020278 FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273 3 4 4 86 3R 18446567 18446652 GCACCAAGATGAACTACTC 57 18446499 18446517 AAGTCGAAGTTGATTTCGG 58 NA Drosophila melanogaster 50 Eip93F FBgn0013948 FBtr0112874,FBtr0084169 3 2 2 132 3R 17821483 17821568 AGAAGATTCTGAGAACAACC 57 17821663 17821681 GTTAACACAGAAGTTGCAC 57 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 3 22 22 87 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202451 17202547 TTGTTCAGGAATACGATAGC 57 NA Drosophila melanogaster 50 CG4562 FBgn0038740 FBtr0083859,FBtr0113250 3 2 2 112 3R 15695216 15695234 AGTACTTTGGAGCGAATGG 59 15695061 15695140 TTTGTTCACCCAGTAGGAC 59 NA Drosophila melanogaster 50 CG31216 FBgn0051216 FBtr0083786 2 1 1 86 3R 15513009 15513908 GACAAGGACAGTGATGACC 59 15513958 15513976 GTAGATGTGTCCCTTGTCG 59 NA Drosophila melanogaster 50 CG6255 FBgn0038708 FBtr0083769 3 1 1 60 3R 15288547 15288565 TTCTAGTCCAGGGATTCAC 57 15288505 15288524 TACTTTATGGACTCCTCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 P5cr FBgn0015781 FBtr0083713 2 1 1 61 3R 14855097 14855115 TTTCATCTGCGTAAAGCCA 59 14855139 14855158 CGTGCTTGTATTTAAGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 VAChT FBgn0015323 FBtr0083671 2 1 1 60 3R 14538929 14538947 CCATCATGTTCTTCTCGAC 57 14538971 14538989 AAGAACAGGACACTGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7671 FBgn0038609 FBtr0083577 1 1 1 60 3R 14193265 14193283 TTATCCCGCCTCCTATCTC 59 14193307 14193325 TTGATGGAAGCCTATCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 14-3-3epsilon FBgn0020238 FBtr0083567,FBtr0083565,FBtr0083566,FBtr0083568 3 4 4 80 3R 14073561 14073579 TATTGCCATGAACGATCTG 57 14073621 14073709 ATCTCATAGTAGAACACCGAG 58 NA Drosophila melanogaster 50 cpo FBgn0000363 FBtr0083534,FBtr0083536,FBtr0100377,FBtr0083535,FBtr0083537 2 5 6 175 3R 13793462 13793481 ACGCCATAATGGAGAATCAG 59 13832725 13832808 TTCATAGCCCTCATAGGCT 59 NA Drosophila melanogaster 50 Fsh FBgn0016650 FBtr0083510,FBtr0083509 2 2 2 81 3R 13555397 13555892 CACCGTGGACATTATACGA 59 13555935 13555955 CAGAATATTATGAGGTGGCAG 58 NA Drosophila melanogaster 50 CG5866 FBgn0038508 FBtr0083440 1 1 1 60 3R 13241763 13241781 TGTCTGAATCGCATGATCC 59 13241804 13241823 GGATGTGAACCATGATAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gish FBgn0011253 FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333 3 6 8 188 3R 12119862 12122388 TAGCGAAACAACTTCTCCA 58 12122599 12122617 CCCGATATGGTATATGCCT 58 NA Drosophila melanogaster 50 Fer2 FBgn0038402 FBtr0083280 1 1 1 96 3R 11975761 11975780 CTACAAACCGACTACGATCC 59 11975629 11975704 CTGTGAGATCACTCGTATTCC 59 NA Drosophila melanogaster 50 CG14867 FBgn0038333 FBtr0083095 1 1 1 240 3R 11207278 11207296 GAGAATCTGCAGTCGAGAG 59 11207559 11207577 CAATCTCGGATCCTTGGTC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Art3 FBgn0038306 FBtr0083135,FBtr0083134 3 2 2 60 3R 11054030 11054049 ATGTTGAACTGATCAAGGGA 58 11053989 11054009 ATGTCGTATTTAGTCTCTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cv-c FBgn0086901 FBtr0112632,FBtr0112630 3 2 3 153 3R 10235277 10235546 GACAATAACTCCACATCGT 57 10235142 10235160 GAGACATATCCTTTGGTGG 57 NA Drosophila melanogaster 50 CG3259 FBgn0038221 FBtr0082924 1 1 1 80 3R 10128427 10128447 GATGTTCGAGAACATAACCAG 58 10128488 10128566 TTGGTTGTTAGTTTGGTTGC 59 NA Drosophila melanogaster 50 twf FBgn0038206 FBtr0082891 3 1 1 122 3R 9948581 9948700 TTTCGATCGAGAATGAGCA 59 9948786 9948804 AGAGAATATAGCAGGGCAC 58 NA Drosophila melanogaster 50 primo-1 FBgn0040077 FBtr0091747,FBtr0091748 2 2 3 103 3R 9535869 9536042 GATCCCTACTATGAGCGTG 59 9535784 9535802 ATCATTCATTTCTGGAGGC 57 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 2 8 8 284 3R 9504400 9504475 AACACGACGTAAATCAGGA 58 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Hrb87F FBgn0004237 FBtr0082851 1 1 2 87 3R 9484278 9484368 TTCAACAAGGGTAACCAGG 59 9484209 9484227 CTCCCATATTTCCACCCTG 59 NA Drosophila melanogaster 50 Act87E FBgn0000046 FBtr0082786,FBtr0082785 3 2 2 60 3R 9252474 9252493 AGAAGGACTCCTATGTTGGT 59 9252515 9252534 TATTTCAGGGTGAGGATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8863 FBgn0038145 FBtr0082751,FBtr0082753,FBtr0082752,FBtr0082755 2 4 5 138 3R 9210185 9210203 CAGTTCGAGGTGATCTTCC 59 9210395 9210413 GTTGCTTGGGATCAAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Tango9 FBgn0037971 FBtr0082508 1 1 1 80 3R 7799941 7800042 ATCGTCGTGGAGTTATATCC 58 7799880 7799898 GCAATAGCATGCTAACAGG 58 NA Drosophila melanogaster 50 Hsp70Ab FBgn0013276 FBtr0082482 1 1 1 60 3R 7784774 7784792 TTTCAAGGTTGTAAGCGAC 58 7784816 7784834 GGACTCACCCTTATACTCC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31374 FBgn0051374 FBtr0082400,FBtr0082401,FBtr0082399 2 3 3 85 3R 7264081 7264158 AGAGTATCCTCAAGGAGGAG 59 7264015 7264033 TTCGTCTAGCTTCATGGAG 58 NA Drosophila melanogaster 50 CG5270 FBgn0037897 FBtr0082387,FBtr0082388 1 2 2 80 3R 7254515 7254534 AGTTCTTGGACAAGTGTGAG 59 7254575 7254656 CTAGTCGAATCTGCTTCAGAG 59 NA Drosophila melanogaster 50 Ugt86Dh FBgn0040252 FBtr0082340 3 1 1 60 3R 7001392 7001410 ATTCTCGTACACCTTTGGC 59 7001432 7001452 GACAAGATTCCTTAAGAACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4570 FBgn0037844 FBtr0082287 3 1 1 64 3R 6683254 6683272 ACATCTTCAACATGGACGA 58 6683300 6683318 AAGGAAGATCTCCTTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rbp1 FBgn0010252 FBtr0082277 2 1 4 104 3R 6610550 6610568 CACTAGGATTCGCGTAGAG 59 6610636 6611133 GGAGTTATCCTGTAGCGTC 59 NA Drosophila melanogaster 50 CG33631 FBgn0053631 FBtr0091608 3 1 1 60 3R 5890200 5890218 CGTGTGGGAAACTACTCAG 59 5890239 5890260 GTAGAACCTGAGGATAGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9458 FBgn0037765 FBtr0082152 2 1 1 60 3R 5645026 5645045 GGTCATGGGTTCTTTATGTG 58 5644985 5645006 AGTAGCTGTACATCATGATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16899 FBgn0037735 FBtr0113209 2 1 1 118 3R 5554050 5554068 AAGAGCAGGTCTTGATGTG 59 5553798 5553885 GGGAGTCAATTATAGCCTGTC 59 NA Drosophila melanogaster 50 eca FBgn0069242 FBtr0082098 2 1 1 141 3R 5510535 5510553 CAGAACTACCAGCGATACC 59 5510412 5510430 AGAAGCTCTTGAGATGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Man-II FBgn0011740 FBtr0082031 3 1 1 83 3R 5239048 5239067 GAAATCTCCTACTTTGCTCG 58 5239110 5239463 CTGTCCATTCTTTACAATGGAC 59 NA Drosophila melanogaster 50 CG18473 FBgn0037683 FBtr0082025 3 1 1 185 3R 5190249 5190324 ATCGATTGACCTCCTATGG 58 5190471 5190491 CATGATAAGAGATGCTACCAG 57 NA InUTR Drosophila melanogaster 50 bel FBgn0000171 FBtr0081888 2 1 1 60 3R 4484087 4484105 CTGGTCTGGACTTGAATGG 59 4484045 4484063 GAAGTCTTGCTGGTTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dhod FBgn0000447 FBtr0081890,FBtr0081891,FBtr0081889 3 3 3 60 3R 4477795 4477813 ATTAATGTGAGCAGTCCGA 58 4477753 4477771 TTAGCTTCTCCTTGCTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9684 FBgn0037583 FBtr0081853 2 1 1 81 3R 4187677 4187697 GTAATCGTTGCTATATTCGCG 59 4187390 4187637 GCTATGGTATTAACCTTCTTGC 59 NA Drosophila melanogaster 50 Poxm FBgn0003129 FBtr0111026 3 1 1 124 3R 4146365 4146383 GTGGTCAACTACATCAGGG 59 4146259 4146277 GATATGGAGCTCACACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Poxm FBgn0003129 FBtr0111026 1 1 1 115 3R 4146356 4146374 TACATCAGGGAACTGAAGC 58 4146259 4146277 GATATGGAGCTCACACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7549 FBgn0037559 FBtr0081825,FBtr0081826,FBtr0110951 1 3 3 85 3R 4085351 4085369 CACCTACAAGCTTCTCCTG 59 4085418 4085507 TACGTGGAATACCATGCAG 59 NA Drosophila melanogaster 50 CG7918 FBgn0037546 FBtr0081789 3 1 1 129 3R 3908754 3908772 GTATCATTCTTACGGTGGG 57 3908865 3908951 GAAACGGTTCCTATTAGCA 57 NA Drosophila melanogaster 50 CG2943 FBgn0037530 FBtr0081765 2 1 1 115 3R 3731985 3732003 ACAAGGACCAATCGATCTG 59 3731805 3731907 ATTGATCCTGAGGATTCCAG 58 NA Drosophila melanogaster 50 alpha-Est7 FBgn0015575 FBtr0081550 1 1 2 179 3R 3346786 3346863 GGCTTTGGGATTTATGAGTC 58 3346626 3346644 ATCATGTAGTGAGTGGAGG 58 NA Drosophila melanogaster 50 CG31544 FBgn0051544 FBtr0081532 2 1 1 88 3R 3245413 3245431 AAACCTGAAACACCTTCAG 57 3245530 3245550 CAGAGATTAAGATCACTACCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG10101 FBgn0037501 FBtr0081531 2 1 1 171 3R 3233943 3233961 AGCTTAACGGATAAGTGGG 59 3234096 3234174 GAAAGTGGATGTTCTGGGT 59 NA Drosophila melanogaster 50 MstProx FBgn0015770 FBtr0081585 3 1 1 60 3R 3194755 3194773 TTACCCAATACGTGCAGTG 59 3194713 3194732 GAAACGTGTTACTGTCTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi2 FBgn0037410 FBtr0078592,FBtr0078593 1 2 2 139 3R 2037522 2037818 CAAGGACCAGTACAAGCTC 59 2037921 2037939 ATTTCAGCAGCTGATTCCA 59 NA Drosophila melanogaster 50 CG1427 FBgn0037347 FBtr0078702,FBtr0078703 3 2 2 83 3R 1427574 1427643 TATAGCCTGCAAACTCGTG 59 1427689 1427708 GGTTGTGCCTCTAGTAAGTC 59 NA Drosophila melanogaster 50 Vha26 FBgn0015324 FBtr0078701,FBtr0078700 2 2 2 81 3R 1418432 1418451 AGAAGGAGAAGCAAGTTGAG 59 1418495 1418591 ACTTTCAGCACCTTCAGAC 59 NA Nonspecific Drosophila melanogaster 50 CG2663 FBgn0037323 FBtr0078795,FBtr0078796 2 2 2 257 3R 1227160 1227241 TACTGGACTATGTGCACTG 58 1226921 1226939 TCAGGAACTTCTTCACCAC 59 NA DesignRelaxed Drosophila melanogaster 50 hd FBgn0086695 FBtr0078802 1 1 1 61 3R 1198927 1198945 GACTTTAGCGACAACTCCT 59 1198884 1198902 TAGCTAAAGAATCCCTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1161 FBgn0037313 FBtr0100434 2 1 2 81 3R 1181886 1181906 GTATAGCCTCCTAGTTACAGC 59 1181949 1182155 TGGTTCATCTAGTTGAGCC 58 NA Drosophila melanogaster 50 Mms19 FBgn0037301 FBtr0078778 1 1 1 64 3R 1061429 1061447 ATACAAGGCTCAGCATACC 59 1061589 1061607 TTGTCACATCGTAGAGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33217 FBgn0053217 FBtr0070045 3 1 1 93 3L 23119449 23119468 TGCAAATTACCTGAGTTGTG 58 23119839 23119858 TTGACACATTACCGTCACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7133 FBgn0037150 FBtr0078485 1 1 1 60 3L 22067407 22067426 TCTACGAAGATCACTACCAG 57 22067366 22067384 TTAATCTCACTGTCGGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL15 FBgn0036990 FBtr0078227 1 1 1 60 3L 20428516 20428534 GGAGTACCTATTCCTAGCC 57 20428474 20428494 GATCCGTATAGTAGTCCACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6597 FBgn0036967 FBtr0074838,FBtr0074837 2 2 2 98 3L 20296363 20296381 ACTATTAGCGACAACATGG 57 20296443 20300946 CAATCTGATATGGCGTCTG 58 NA Drosophila melanogaster 50 CG7017 FBgn0036951 FBtr0074856 1 1 1 60 3L 20203971 20203989 GACAGACTTAACGTACGCT 59 20203929 20203947 TTACGTAGGTGATGTTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32221 FBgn0052221 FBtr0074883 1 1 1 60 3L 19828249 19828269 CCGTATTTATTGAGGATGAGC 58 19828291 19828309 TGGTGCTCTTGTAGTTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nes FBgn0026630 FBtr0075021,FBtr0075020,FBtr0075019 3 3 3 87 3L 19251647 19251665 ATACATGGTTGTGAGCACC 59 19251405 19251423 CGAGTTGTTCAGAATGTGG 58 NA DesignNoJunction Drosophila melanogaster 50 Mkp3 FBgn0036844 FBtr0075035,FBtr0075036 3 2 2 63 3L 19062620 19062641 GATCACTACTCACAAGATTTGG 58 19062374 19062596 GCGCTTCCTCTATAAACTG 57 NA DesignRelaxed Drosophila melanogaster 50 CG34256 FBgn0085285 FBtr0112450 1 1 1 60 3L 18982211 18982230 AGATGGCTATTTATACGCGA 58 18982170 18982190 GCAGCTATATCTTCGAGAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13725 FBgn0036708 FBtr0075248 1 1 1 60 3L 17318391 17318412 ACGGGATATTAGATCTCTTCTG 58 17318352 17318371 GTCAGCGGAATATTCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GXIVsPLA2 FBgn0036545 FBtr0075509,FBtr0075508 1 2 2 64 3L 15948605 15948623 AACTGCATATACCAGTGCC 59 15948714 15948732 TTATTCTGAACCGCTCTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12304 FBgn0036515 FBtr0075565,FBtr0075566 2 2 2 61 3L 15577530 15577748 ATTAAAGGAGGTGCCACTG 59 15577772 15577791 CATAGGGTATGAAGTTGGGA 58 NA DesignRelaxed Drosophila melanogaster 50 CG5392 FBgn0036463 FBtr0075671 1 1 1 60 3L 15004306 15004327 TGTGGAATCTATAAGATCACCC 59 15001065 15001083 GACCTGATTGCAACATGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Trl FBgn0013263 FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704 1 8 9 198 3L 14747639 14750013 CTTGCTAAAGAATACACCATGC 59 14747462 14747480 GTAGTCGTCCTTGGTAACC 59 NA Drosophila melanogaster 50 CG4613 FBgn0036427 FBtr0075725 2 1 1 180 3L 14513252 14513270 GTACAGGTCCATGATCGTG 59 14513019 14513037 AGTATAGACACCAGGAGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG9592 FBgn0036426 FBtr0075717 3 1 1 60 3L 14511104 14511122 ATAGAAGACCTTGAGCTGC 59 14511145 14511164 CTAATTGAGCTCTACACGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8100 FBgn0036410 FBtr0075779 1 1 1 60 3L 14078216 14078236 GATATTCAAGTTAGTCGCCTG 58 14078258 14078276 GATTGATGAGATCCGTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10089 FBgn0036369 FBtr0075822,FBtr0075823,FBtr0075820,FBtr0075821 1 4 4 135 3L 13462085 13462103 AAGATCTCGCACATCATCG 59 13461910 13461928 GTATGAAGTCGTTGCAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Syx13 FBgn0036341 FBtr0075886 2 1 1 67 3L 13038637 13038655 TGTCAACCAGATCATGACC 59 13038686 13039325 CGATGAAATCCATCTGCTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG11560 FBgn0036249 FBtr0075993 3 1 1 62 3L 12113456 12113475 ACGTACGGTATATCAAGCAG 59 12113500 12113518 GATCATGGTCGTAGGAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6793 FBgn0036242 FBtr0076051 3 1 1 60 3L 12036984 12037002 AAACCATTTATTCGCGCTG 59 12037025 12037044 GTATCTCTGCTCCTATCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34239 FBgn0085268 FBtr0112433 2 1 1 71 3L 11033583 11033601 AGATGTCCTTGAAACGTGG 59 11033530 11033548 CTAACGAGGTGGTCATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14160 FBgn0036066 FBtr0076316,FBtr0113160 3 2 2 234 3L 10082166 10082184 CTAATGTGGAAATACCGCC 58 10081408 10081906 CACTGGAGGTATATGCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG8336 FBgn0036020 FBtr0076384,FBtr0076386,FBtr0076385 1 3 3 122 3L 9624229 9624301 CAAGTTCACAGGAGATGGG 59 9624387 9624405 TAGTATCGATTCGCCTTGC 59 NA Drosophila melanogaster 50 CG32043 FBgn0052043 FBtr0114368,FBtr0076465,FBtr0114367,FBtr0076466 1 4 4 107 3L 9463441 9463459 AATTCGCTCGATATCTGGG 59 9463530 9463670 CCTTCGTGTAGATTTCCGT 59 NA Drosophila melanogaster 50 CG3967 FBgn0035989 FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480 1 5 5 116 3L 9411532 9411550 AACAATTTCGTGCTCTACG 58 9410905 9411452 TGTGTTAGGACTGTTTGTG 57 NA Drosophila melanogaster 50 PGRP-LA FBgn0035975 FBtr0076432,FBtr0076435 1 2 4 180 3L 9329862 9329880 GATAAGTCGCCATCTAGGC 59 9330024 9330094 GATTCGGAAACGTTTGGTG 59 NA Drosophila melanogaster 50 Prm FBgn0003149 FBtr0076593,FBtr0076594 1 2 4 143 3L 8732792 8732810 CATCATCCTGTACGAGACC 59 8732582 8732686 TCATGAAGATCATCTCCCAG 58 NA Drosophila melanogaster 50 CG32352 FBgn0052352 FBtr0076628,FBtr0076629,FBtr0076630 3 3 3 189 3L 8581743 8581761 GACATCAGTCCAGATCTGC 59 8581912 8586580 CGTATTCATGATCACTCTCGT 59 NA Drosophila melanogaster 50 CG7120 FBgn0035888 FBtr0076609 1 1 1 86 3L 8393713 8393731 ATCTTATCAGAGCCATGCC 59 8393779 8393858 TGTCGTCCACCTTATTATAGC 59 NA Drosophila melanogaster 50 CG7188 FBgn0035871 FBtr0076711,FBtr0076712 3 2 2 109 3L 8301271 8301289 AGTACCTCTATCTGGGTGG 59 8301053 8301200 GTAAAGTTGAGTCACTTGCAC 59 NA Drosophila melanogaster 50 CG7387 FBgn0035852 FBtr0076723 3 1 1 60 3L 8184994 8185012 CTAGCGACTATTTCCGACG 59 8184952 8184971 GAGATGTTTAGGTGCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mthl7 FBgn0035847 FBtr0076726,FBtr0076727 1 2 2 107 3L 8172115 8172135 CTGACAGCCATTTACATTAGG 58 8171965 8172046 CTGTAGGTAAGTCTGGCTG 59 NA Drosophila melanogaster 50 exex FBgn0041156 FBtr0076751 1 1 1 296 3L 7942377 7943260 CATGTCGAGATCAGAGTCG 59 7943520 7943673 TTATGACCCATGGGTATCG 58 NA DesignNoJunction Drosophila melanogaster 50 SP1173 FBgn0035710 FBtr0076960,FBtr0076959,FBtr0076958 2 3 4 88 3L 6685394 6685480 TAATAACCGGTCTTACAGCT 58 6685325 6685343 AGTAATGGTCCGGTATTCC 58 NA Drosophila melanogaster 50 CG33993 FBgn0053993 FBtr0100046 3 1 1 185 3L 5927082 5927163 CAAGATAAAGGGCTTCACCA 59 5926916 5926934 CCATACATCTCGAAGTCCG 59 NA Nonspecific Drosophila melanogaster 50 CG12493 FBgn0035571 FBtr0073363 3 1 1 60 3L 4753104 4753123 CGTGATAATCGACAACATGC 59 4753063 4753082 AATGTTAGCCACATTCTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15021 FBgn0035544 FBtr0073301 3 1 1 165 3L 4437762 4437780 ATCTGAGTATTTGCCACCT 58 4437909 4437927 ATAAGTAGGTCCTGGTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gad1 FBgn0004516 FBtr0073276,FBtr0073277,FBtr0073275 1 3 3 80 3L 4082635 4084743 ACTGACGGCATATGATCTC 58 4082573 4082591 ACATCGATTACCTTCAGCA 58 NA Drosophila melanogaster 50 CG11591 FBgn0035491 FBtr0073281 1 1 1 119 3L 4047185 4047203 CTGCTGAAGAACAAGAACC 58 4047084 4047102 ACAGTTCGTCGTGATAAGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133 2 5 11 192 3L 3578467 3593333 TTGCAGATATGGAGACTGG 58 3593487 3593507 CTGTTTGTTCAGAAAGACCTC 59 NA Drosophila melanogaster 50 CG33159 FBgn0053159 FBtr0073104 2 1 1 60 3L 3204331 3204349 ATTTCGGAAGTTCCGTACC 59 3204289 3204310 ATCCTCCACAGATAAAGTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32278 FBgn0052278 FBtr0073033 3 1 1 81 3L 3171095 3171170 AAGCTCAAGCAGATCAAGG 59 3171214 3171233 CCAGATCCTTGTGTAGAGTC 59 NA Nonspecific Drosophila melanogaster 50 aly FBgn0004372 FBtr0073006 2 1 1 96 3L 3026049 3026067 GTAGATGTTTCGGAGGACG 59 3025908 3025992 GGAAATTGTACAATCTCTTGCC 59 NA Drosophila melanogaster 50 Psa FBgn0035226 FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697 1 6 6 113 3L 1520667 1520685 GAGACCTTTGTGCTAGTGG 59 1520761 1521150 CATAGTTACCAGATTGCCGA 59 NA Drosophila melanogaster 50 scf FBgn0025682 FBtr0089942,FBtr0089940,FBtr0089941 2 3 3 60 3L 1299622 1299641 ATGGTTATTTGAACGAGGAG 57 1299664 1299682 GAATGATCGAAGTCATGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trio FBgn0024277 FBtr0072645,FBtr0072644 2 2 6 101 3L 1024539 1024557 ATGAGACTAAGTTTGCCGT 58 1024398 1024474 TAACCCAAATCTGCTTGGT 59 NA Drosophila melanogaster 50 MED30 FBgn0035149 FBtr0072558 3 1 1 61 3L 653281 653299 ATCTACGAGAAGTGCAACG 59 653238 653256 TAGGGAATCAGACTCTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16940 FBgn0035111 FBtr0072486,FBtr0072487,FBtr0072485 1 3 3 80 3L 215571 215591 ATACACTCACTTTACTAGCCC 58 215691 215709 CAATATTTAAGTGCGGCCG 59 NA DesignNoJunction Drosophila melanogaster 50 p130CAS FBgn0035101 FBtr0113120,FBtr0072474 1 2 3 101 3L 168759 168777 CAAACTCAAATTCGGGAGG 58 168842 172070 GTGTGATTACCTTTGTCGG 58 NA Drosophila melanogaster 50 itp FBgn0035023 FBtr0072306 2 1 2 81 2R 20443081 20443813 CACCGATTATGCAAGAAAGAC 59 20443853 20443874 TTTCCTCTTCGGGTATTAACAG 59 NA Drosophila melanogaster 50 CG10904 FBgn0034945 FBtr0072205 3 1 1 60 2R 19857208 19857226 GATCGAGATTCGGAGAAGG 59 19857166 19857185 ATCGTAGGAACATCAACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fmo-1 FBgn0034943 FBtr0072150 1 1 1 134 2R 19851708 19851726 TACTACAACGGATCCAACG 59 19851824 19851906 ATAGTCGATTTGCTTGGGA 58 NA Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 2 8 8 81 2R 19817734 19817752 TCCATCTTCCTTACTGCTG 58 19817612 19817691 CATCAGTAACCAAGTTAACCC 58 NA Drosophila melanogaster 50 PHDP FBgn0025334 FBtr0072224 3 1 1 95 2R 19771317 19771337 ACTACCCAGATATCTACACCA 59 19770974 19770992 ACTTGGCTCTTCTGTTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 TBPH FBgn0025790 FBtr0089627,FBtr0089626,FBtr0089625,FBtr0089624 1 4 4 143 2R 19748031 19748104 CATTATCAAGGGCGTTTCG 59 19747906 19747924 TTCATGTGGTTACCCTGTG 59 NA Drosophila melanogaster 50 skpF FBgn0034863 FBtr0072022 3 1 1 169 2R 19346183 19346201 CATCAAATTGCAGTCCTCC 58 19346032 19346051 AAATGAGGACCTTCTTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3520 FBgn0034859 FBtr0072027 1 1 1 80 2R 19284605 19284680 TCAGGAGGCTAAGATATACGA 59 19284545 19284563 CTGAAGACATCGGCATAGG 59 NA Drosophila melanogaster 50 Gr59b FBgn0045482 FBtr0071965 1 1 1 60 2R 18970570 18970589 GCTGCTTGGACTACTATCTC 59 18970612 18970630 GAATCGTGGTACTCCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k09913 FBgn0021979 FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961 2 4 4 100 2R 18958340 18958358 GAGATGGGATTCGATGTGG 59 18958498 18958516 AGGAATCGAATAGTCTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3788 FBgn0034800 FBtr0071995 3 1 1 81 2R 18820692 18820710 GACATACTCTACCACCTGG 58 18820558 18820647 CCATGCATACAAACCTCAC 58 NA Drosophila melanogaster 50 CG13530 FBgn0034777 FBtr0071915 1 1 1 167 2R 18664574 18664592 TCACCATTTCTCCTATGGC 59 18664084 18664443 TTTCGCAGATCATTTGGTG 58 NA Nonspecific Drosophila melanogaster 50 Rtf1 FBgn0034722 FBtr0071820 2 1 1 173 2R 18264934 18264952 CGAAGATGACATGCAACTG 59 18265089 18265164 TTCGTATTGACTGGTAGCG 59 NA Drosophila melanogaster 50 CG5625 FBgn0034708 FBtr0071771,FBtr0071772 2 2 2 82 2R 18075291 18075365 ACATGAACAACATCTCCCA 58 18075408 18075429 GTTGTTGTAGAAGTCGATACAG 58 NA Drosophila melanogaster 50 CG13502 FBgn0034692 FBtr0071799,FBtr0113103 3 2 2 66 2R 17974427 17974445 ACTTCGTCGACTTCTACAC 59 17974379 17974397 TTGATGTCAAATGCACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6393 FBgn0034685 FBtr0071752,FBtr0071751,FBtr0071753,FBtr0071750 1 4 4 79 2R 17956399 17956417 GCGATCGTGATGTTTAACG 59 17956459 17956478 TTTGACTTGTTCATCTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13501 FBgn0034684 FBtr0071804 2 1 1 60 2R 17947774 17947793 AGCTATCATTGAAATGGACC 57 17947669 17947689 CAATCTCATACGCATAAAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10320 FBgn0034645 FBtr0113102,FBtr0071663,FBtr0113101 1 3 3 213 2R 17545965 17545983 ATTGAAGGATCCATGGCTG 59 17546219 17546237 CTTATCTCCGTGTTCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fkbp13 FBgn0010470 FBtr0071702,FBtr0071703 2 2 2 70 2R 17375559 17375578 CAATGTGTTCAAGGAGATCG 58 17375335 17375526 TTAGATACTCGCTGACCTC 57 NA DesignRelaxed Drosophila melanogaster 50 Acox57D-d FBgn0034629 FBtr0071607 1 1 1 115 2R 17277627 17277645 AGGAGGTCTACAATTCCAC 58 17277724 17277803 ATTGAATAGTCCTCCAGGC 58 NA Drosophila melanogaster 50 EfSec FBgn0034627 FBtr0071608 3 1 1 60 2R 17273039 17273060 ACTTAGAGAAGCCTACTTTCAG 59 17273000 17273018 AACGTACATGAAGAGTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11180 FBgn0034528 FBtr0086254 1 1 1 60 2R 16508991 16509009 GCTGTCGATAATCGAAAGG 58 16508949 16508967 TCTTGTCAGCACTTACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bl FBgn0015907 FBtr0086219 1 1 4 87 2R 16483305 16485961 AAGATGAGGACTCAGAACC 58 16486011 16486030 CTCCTCAAAGTATTTCAGCA 57 NA InUTR Drosophila melanogaster 50 CG15905 FBgn0034462 FBtr0086491 2 1 1 60 2R 15534461 15534480 CTCGATCCAAGGATATACCC 58 15534420 15534438 GGTGGCGTAATTAAAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494 2 7 7 152 2R 15418202 15419689 CTATTGAGGGTAAAGGCAC 57 15418068 15418087 CTCAATTGTAGATGTCCACC 57 NA Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0086456,FBtr0086451,FBtr0100392,FBtr0086457,FBtr0086454 3 14 15 97 2R 15359155 15359173 ACAAGTGGATGAACATGGG 59 15359234 15360334 GACTAGAGCTTCTATCCGC 59 NA Drosophila melanogaster 50 rib FBgn0003254 FBtr0086512 1 1 1 74 2R 15166377 15166395 CTCTGTCTACGAATCAGCC 59 15166433 15166451 AGAAGCATGCTTGAAATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33454 FBgn0053454 FBtr0086565 1 1 1 86 2R 15138745 15138763 AACATCAACCATTCTTGCC 58 15138616 15138634 ATCTCCAGAGGGAAATGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG15111 FBgn0034419 FBtr0086581,FBtr0086580 2 2 2 68 2R 15027275 15027293 TATTCCGTAACGTTCCAGC 59 15027388 15027406 GAGATCAAGTCCTTTGGGA 58 NA DesignNoJunction Drosophila melanogaster 50 GstE9 FBgn0063491 FBtr0086677 2 1 1 61 2R 14296673 14296693 CCTTCAGTATGAGTATAGGCT 58 14296716 14296734 TGAACTCCTTCGTCTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 elk FBgn0011589 FBtr0086802 3 1 1 85 2R 13809521 13811139 ATATTAAGGCGCTAACCTACTG 59 13811183 13811203 CTGATACTCCGGATATAAGCG 59 NA Drosophila melanogaster 50 CG30460 FBgn0050460 FBtr0087011,FBtr0087012,FBtr0087009,FBtr0087010,FBtr0113378 3 5 5 109 2R 12955106 12955124 AGTTAAGCAGTCTCGATGG 59 12954944 12955033 ATAAGGTGAGTTGCTGCTG 59 NA Nonspecific Drosophila melanogaster 50 CG15709 FBgn0034100 FBtr0087186 2 1 1 61 2R 12141949 12141967 GCGATTCCAGTTATGTGGA 59 12141744 12141762 AATTGATTTGCAGTAGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Dg FBgn0034072 FBtr0087258,FBtr0087257,FBtr0087256 2 3 3 101 2R 11972594 11972679 CTTTATGGCCTACCTCTGG 59 11972511 11972529 ACTTATCTCCACGGTTTCC 58 NA Drosophila melanogaster 50 CG8405 FBgn0034071 FBtr0087210 1 1 1 80 2R 11936758 11936841 TGTTTATAGTCGACCTGCTG 59 11936884 11936902 ATATGACAGTGAGCAACGG 59 NA Drosophila melanogaster 50 CG30084 FBgn0083919 FBtr0113484,FBtr0111048,FBtr0100388,FBtr0100387,FBtr0087315 2 5 6 80 2R 11652678 11652696 TATCCTGAATAAGGCAGCC 58 11651323 11652635 ATAAAGGGTCCTCTGATCTG 58 NA Drosophila melanogaster 50 CG30080 FBgn0050080 FBtr0087319 1 1 1 86 2R 11588822 11588895 TTCTCCTAATGGCGATTGG 59 11588754 11588774 CTAACTGGGAAATTCGTTGAG 58 NA Drosophila melanogaster 50 CG12964 FBgn0034022 FBtr0087358 3 1 1 92 2R 11376845 11377060 GTGCAGTTGCTCAATATCC 58 11376771 11376789 TGATGATCTCGATGATGGG 58 NA Nonspecific Drosophila melanogaster 50 Obp51a FBgn0043530 FBtr0087420 1 1 1 60 2R 10912066 10912084 GTGTGGTAACACCATTCGA 59 10912024 10912044 TACTTATCATAGCTCTCCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ih FBgn0028428 FBtr0100372 1 1 4 86 2R 10179876 10181606 AGGAGGTCTATATTCTGCAG 57 10181655 10181673 TTGTCAAGCCATCTTTGTC 58 NA Drosophila melanogaster 50 Mdr50 FBgn0010241 FBtr0087537 2 1 1 80 2R 10138577 10138660 GCTGTTGAGATTTCCAAGAG 58 10138702 10138721 ATAGGCAAAGAACATCAGGG 59 NA Drosophila melanogaster 50 CG13350 FBgn0033890 FBtr0087606 3 1 1 64 2R 9869156 9869174 GTGCTAACCATACCAGGAC 59 9869110 9869129 TAAACAACCATTAGGCTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6329 FBgn0033872 FBtr0087634,FBtr0087633,FBtr0087635,FBtr0087636 1 4 4 140 2R 9717361 9718064 TGCATACAAGTGACCACTG 59 9718168 9718186 TTTGTCCTTCAGATGCTCC 59 NA Drosophila melanogaster 50 CG33156 FBgn0053156 FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681 3 5 5 83 2R 9436514 9436532 TTATGGTGACTCCCATCTG 58 9436390 9436470 ATACTGATATCTTCAGCTCCAC 59 NA Drosophila melanogaster 50 PR2 FBgn0013955 FBtr0087777,FBtr0087776 1 2 2 85 2R 9036510 9036531 GTGAAACCTATTTCTGTGAAGG 59 9036384 9036464 TCAATCATCGACCTAGCAC 59 NA Drosophila melanogaster 50 Iswi FBgn0011604 FBtr0087842,FBtr0087841,FBtr0087843 3 3 3 93 2R 8527487 8527566 GGCTATAAGAGCTTCTCCG 59 8527623 8527641 GGTAATCAACGTGTTGCAG 59 NA Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835 2 6 8 109 2R 8504609 8504628 CTGCATATTTACCCACTGAG 58 8504697 8505312 GACGTCTACCATTCTAAATCTG 58 NA Drosophila melanogaster 50 Cpr49Ac FBgn0033725 FBtr0087917,FBtr0087916 2 2 2 88 2R 8276584 8276771 GATCACTCTTACCTGACTGAG 59 8276821 8276839 TAGAATCCCTTGGCATGTG 59 NA Drosophila melanogaster 50 prp8 FBgn0033688 FBtr0088016 3 1 1 82 2R 8047812 8047887 GATTCGGAAATGCTTTCCA 58 8047748 8047767 TAGCCGATACTGAACATGAG 58 NA Drosophila melanogaster 50 wal FBgn0010516 FBtr0088082,FBtr0088083 3 2 2 122 2R 7578026 7578044 GGTACTCAATCCGATCACC 59 7577365 7577383 CCATCCACCTTGGAAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9005 FBgn0033638 FBtr0088089 2 1 1 85 2R 7508911 7509129 CTTATTTGTGCGAGATTCGT 58 7508845 7508864 TATGGGATTCAGTAGTGTGG 58 NA Drosophila melanogaster 50 CG34223 FBgn0085252 FBtr0112416 2 1 1 72 2R 7123572 7123591 GTCTTTAGTCGTCTTCAACC 58 7123626 7123644 TGGTGGTAGTTATACCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7220 FBgn0033544 FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217 1 5 5 109 2R 6624696 6624714 CATGTTGAGTAGTTGTCGC 58 6624787 6624870 CAGAATCATCGTGGTACCA 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0089348 1 1 26 104 2R 6403408 6403426 CATAAATCCGGATGGACGT 59 6403146 6403342 TGTCCACCACATTCATATCTG 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 2 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421092 TAGTAAGGTAGCAAAGTAGGG 58 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 1 26 26 80 2R 6421013 6421095 AGTCCCTACTTTGCTACCT 59 6420951 6420970 CTCTTGGTACTTGACATCCT 58 NA Drosophila melanogaster 50 CG2264 FBgn0033478 FBtr0088400,FBtr0088399,FBtr0088401,FBtr0088402 1 4 5 152 2R 5948857 5949128 GAGTTTCACAACCGTAGTG 58 5949244 5949262 GTGTGGATTAACTCCAGTG 57 NA Drosophila melanogaster 50 Orc6 FBgn0023180 FBtr0088482 3 1 1 60 2R 5733155 5733174 GACTACGAAATATGGAAGGC 58 5733114 5733135 CTAATTCCTTCAATTTGGCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30001 FBgn0050001 FBtr0088492 3 1 1 80 2R 5709901 5709921 GTGGACCTGATCATATTCCTG 59 5709778 5709859 AGATTCAGCATCGTAAGCC 59 NA Drosophila melanogaster 50 Pkn FBgn0020621 FBtr0088602,FBtr0088601 1 2 6 80 2R 5155477 5171346 ATTCGTATTATCAGGGCGA 58 5155415 5155433 GCAGATTCTCTGTGAAACC 58 NA Drosophila melanogaster 50 hig FBgn0010114 FBtr0088608,FBtr0100119,FBtr0088606,FBtr0088607 3 4 4 153 2R 5122075 5122093 AGTACGGAAATCAGTCGAG 58 5120228 5121958 TCGTAGATACCCTTGTCCT 58 NA Drosophila melanogaster 50 CG8026 FBgn0033391 FBtr0088611,FBtr0088610 2 2 2 87 2R 5076504 5076583 GTACTTCATGTTCTACAACACC 59 5076438 5076456 TGCAAGCATGTTCATTGTG 59 NA Drosophila melanogaster 50 Rya-r44F FBgn0011286 FBtr0088640,FBtr0088638,FBtr0088637,FBtr0088639 3 4 4 81 2R 4772298 4772385 GTTGTTAACGGCACTATTGG 59 4772426 4772447 AGTACTTAAGAATCAGCTCCAC 59 NA Drosophila melanogaster 50 Cyp4ad1 FBgn0033292 FBtr0088760 2 1 1 82 2R 4327726 4327864 TATATTTACAGGTCACGATCCC 59 4327665 4327683 TTTGCTGAATCTCCGAGTG 59 NA Drosophila melanogaster 50 CG8701 FBgn0033287 FBtr0088740 2 1 1 65 2R 4259247 4259265 CTAGAATCAAGATGCCCGG 59 4259294 4259312 TCTTACGTCTAACGACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111078 2 1 60 85 2R 3246158 3246176 GAGATTTCCCAGGGAATCG 59 3236463 3246111 TCGATGAACTTGTACCATCTG 59 NA Drosophila melanogaster 50 CG17665 FBgn0039997 FBtr0111269,FBtr0111268 2 2 2 84 2R 124473 124493 GAGTTTGAGACATACGAACAG 58 124352 124429 GCAATATGTCCTGTATACACC 58 NA Drosophila melanogaster 50 CG17018 FBgn0039972 FBtr0085958,FBtr0085957,FBtr0085956 3 3 3 80 2L 22365253 22365274 GTCAGTTATACTCGAGATTCCT 58 22365314 22365385 TGGGACATCCTTTAGAAGTC 58 NA Drosophila melanogaster 50 CG8671 FBgn0032938 FBtr0081483 2 1 3 89 2L 21280368 21280386 ACTACTATGTCCGTTTCGG 58 21280439 21281141 GCTGGGATTCATCATTGTG 58 NA Drosophila melanogaster 50 CG9257 FBgn0032916 FBtr0081465 1 1 1 60 2L 21103556 21103574 TCAAGGGAGATATCTCCCA 58 21103598 21103616 TTAATCCTCTCAGTCGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spi FBgn0005672 FBtr0081271,FBtr0081269,FBtr0081268,FBtr0100597 2 4 7 209 2L 19571730 19571749 ATACAGAAACGAGAAGAGCC 59 19569195 19569213 CGTAAACGTTGAGTTAGGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG10132 FBgn0032798 FBtr0081247 2 1 1 84 2L 19524101 19524119 GTGGGTAACTATGAGGCAG 59 19524164 19524249 TGAGAGTGACCTTAAACTTTCC 59 NA Drosophila melanogaster 50 dnt FBgn0024245 FBtr0081224 3 1 1 107 2L 19339845 19339864 CAAATTGTGATGATGGCCTC 59 19339639 19339775 CTGATCGTCAATAACGCAG 58 NA Drosophila melanogaster 50 Fas3 FBgn0000636 FBtr0081051 2 1 4 109 2L 18391268 18391287 CAAGGATAATCAGGAGTCGT 58 18391359 18392077 GCCAAACTATAGCCTTTGG 58 NA Drosophila melanogaster 50 CG5559 FBgn0032653 FBtr0080987 2 1 1 101 2L 17602612 17602632 AGTCTATAATGAGGCTCTTGC 59 17602695 17603125 TCACTTGATCCCAATAGGC 59 NA Drosophila melanogaster 50 CG31806 FBgn0051806 FBtr0080952 3 1 1 82 2L 16985305 16985324 CTTAAACGAAGTCATGCCAG 59 16985369 16985387 CTTCCTCAACCAGGATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cas FBgn0022213 FBtr0080930 3 1 1 94 2L 16823561 16823651 AAGTACGATTCGTTGGTCTC 59 16823486 16823504 AGAATCTCTGGGTTCTCGA 59 NA Drosophila melanogaster 50 VhaSFD FBgn0027779 FBtr0080941,FBtr0080940,FBtr0080942 1 3 3 120 2L 16724785 16724867 AACTTCCAGGTGCAATACC 59 16724683 16724701 AATCGCTGAGGATATCAGC 59 NA Drosophila melanogaster 50 grp FBgn0011598 FBtr0080886,FBtr0080884,FBtr0080885 3 3 4 113 2L 16692022 16692041 CAGGATAAGCATATCCTCCG 59 16692117 16696595 CACGTCTGGTTCTATTCGA 59 NA Drosophila melanogaster 50 cact FBgn0000250 FBtr0080844,FBtr0080845,FBtr0080847 2 3 4 127 2L 16314551 16314569 CGTGCATCATGAACAAGTC 59 16313442 16314462 ATCGTACATCTTCGTATCGTC 59 NA Drosophila melanogaster 50 vig FBgn0024183 FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720 2 4 4 84 2L 15065452 15066950 TTCCGATAGAACTGGTGTG 58 15065386 15065404 ATCAATAGCCTCCTTGACC 58 NA Drosophila melanogaster 50 CG7311 FBgn0028848 FBtr0080530,FBtr0080529 2 2 2 60 2L 13709780 13709799 AAATCTTGTGGACTATGCGA 59 13709821 13709840 CTAACTTCAAGTCCTGTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18507 FBgn0028527 FBtr0080528,FBtr0080527 3 2 2 137 2L 13668242 13668260 CATCAGCATAATGGAGGTG 57 13668697 13668715 AAGTGTGACAATCACATCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5458 FBgn0032478 FBtr0080437 1 1 1 60 2L 13183902 13183921 GTATGATGGGAACTACAGGA 58 13183944 13183962 ATCCTTGAACACGTACACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bun FBgn0010460 FBtr0111003 3 1 6 190 2L 12477159 12498535 GATTTCATCGGTGCATCTG 58 12458096 12458115 ATGTTCGACTTGAGAATGCT 59 NA Drosophila melanogaster 50 escl FBgn0032391 FBtr0100626,FBtr0080286 3 2 2 60 2L 11991112 11991131 ATGAGCACGAAGTTAATTCC 58 11991152 11991172 GTAGTAGTGCTGAACAAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14943 FBgn0032383 FBtr0080323 2 1 1 60 2L 11858884 11858907 GTACTCCTATGTCATAGGTAAGTG 59 11858847 11858865 AGAGGAGCTTTGAATTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16833 FBgn0026147 FBtr0080152,FBtr0080150 3 2 3 87 2L 10990770 10991064 TGGGATAACATACTCTCGGA 59 10991114 10991132 CACGGTTGTAGAAGTACGA 59 NA Drosophila melanogaster 50 Nos FBgn0011676 FBtr0100487 3 1 10 177 2L 10831342 10831360 ATGTCACAGGATTATCGGT 58 10825828 10825959 GATGATGTACGCTTTATCGA 57 NA InUTR Drosophila melanogaster 50 CG31869 FBgn0051869 FBtr0080189 1 1 1 199 2L 10775281 10775378 CGATTATAAATGCGATTGCG 58 10774739 10774757 TTGGACAATTGTCGTACTG 57 NA Drosophila melanogaster 50 CG31716 FBgn0051716 FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012 3 6 6 96 2L 10400665 10400738 GAAGCAGAGTAACAGATGC 58 10400797 10400816 TTTAATATGGGTGCTTGCTG 58 NA Drosophila melanogaster 50 hoip FBgn0015393 FBtr0079846 1 1 1 68 2L 9700000 9700018 ACTGAGGAAGTTAATCCCA 57 9700050 9700068 CAAGTTCATGATCTTGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31708 FBgn0051708 FBtr0079776,FBtr0079777 2 2 2 101 2L 9062471 9062492 CCCGAATTTACTGAATACATCG 59 9060918 9062409 CCAGGCGACCTTATATGAG 59 NA Drosophila melanogaster 50 Hnf4 FBgn0004914 FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846 2 4 4 100 2L 8688854 8688935 TCTTCTTCGATCCCAATGC 59 8688772 8688792 CCGATCTGATATGTAGTCCTC 58 NA Drosophila melanogaster 50 CG13089 FBgn0032052 FBtr0079682 2 1 1 63 2L 8516291 8516369 ATGTTGGAAATTCATGGCC 58 8516395 8516414 CATAGATAGAGTGACCAGGA 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG7196 FBgn0031944 FBtr0079482,FBtr0079483 2 2 2 60 2L 7765142 7765221 CAGAAATGCCAAGGATATTCG 59 7765243 7765261 CTCACCCATGATGATCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Ntl FBgn0031934 FBtr0079478,FBtr0079479 1 2 2 113 2L 7712415 7712488 AGGAATTAAGTCGGTTGGC 59 7712565 7712583 TTTATGCCTTTCCAGGCTC 59 NA Drosophila melanogaster 50 Gr28b FBgn0045495 FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458 1 5 5 117 2L 7455130 7455212 TTGTATTTCACGATCAGCG 58 7455031 7455049 TATTGAAGGTCTCACAGCA 58 NA Drosophila melanogaster 50 santa-maria FBgn0025697 FBtr0079464,FBtr0079465 1 2 2 153 2L 7446346 7446427 CTGTAGATAATGGCACCCAG 59 7446212 7446230 TCTGGGTAGTAAGGATCGG 59 NA Drosophila melanogaster 50 CG13775 FBgn0031874 FBtr0079363 2 1 1 84 2L 6955193 6955268 GTCTCATCTGTGACTATATGCA 59 6955130 6955148 TGATGTCGCTAGTGATGTG 59 NA Drosophila melanogaster 50 CG10354 FBgn0031868 FBtr0079345 2 1 1 60 2L 6910103 6910121 TCAACTTACTGGAGAGGAG 57 6910143 6910163 GCTGATGTACAGGTAATTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11221 FBgn0031855 FBtr0079303 2 1 1 63 2L 6754175 6754193 GATCCATCTCATTCCGGAC 59 6754219 6754238 CTCTATGTTGTACTGGTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tkv FBgn0003716 FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086 2 4 4 228 2L 5221390 5221470 TTCTCATGTGCAAGGTAGC 59 5221180 5221198 AAACATAAGCTAGCCACGA 58 NA DesignRelaxed Drosophila melanogaster 50 CG2837 FBgn0031646 FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403 3 4 4 165 2L 4904903 4904924 AGTTTACTCCAATATACCACCG 59 4904700 4904721 CTTGTTGAACGATTGATCATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15432 FBgn0031603 FBtr0077438 1 1 1 63 2L 4442734 4442752 CAACAAGCGAATCATGGAC 59 4442779 4442797 CTCGTTGAATTTCTCCACG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Art2 FBgn0031592 FBtr0077476 1 1 1 60 2L 4278802 4278822 GGATATTATAGTGTGCGACTG 58 4278636 4278654 CGACTCGAGCATATTTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 sob FBgn0004892 FBtr0077558 3 1 1 70 2L 3579696 3579714 GCAGCTCTTAATCTCCAGG 59 3579644 3579662 AATACATCCGATTTCCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9641 FBgn0031483 FBtr0077677 3 1 2 131 2L 2975183 2975202 TAATGAAGACACATGCTCCT 58 2975000 2975018 ATACTGCTGTCCTTGTTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 p16-ARC FBgn0031437 FBtr0077694 2 1 1 101 2L 2580478 2580496 ATGAGAGCGAGATTACGAC 58 2580561 2580579 TCACATTCTGGTTCTTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4272 FBgn0028485 FBtr0077763,FBtr0077762 2 2 2 60 2L 2368169 2368189 TCGTACGGAGAACTATATCAG 58 2368209 2368331 CCGTATAGGAAGTGATCTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31665 FBgn0051665 FBtr0089787,FBtr0089786 3 2 2 123 2L 1851262 1851698 ACCTGCTAATTGTGGTGTC 59 1851785 1851803 GAGTTGGAGTAGCACACTC 59 NA Nonspecific Drosophila melanogaster 50 CG11562 FBgn0031247 FBtr0078130 1 1 1 66 2L 292936 292954 TTTCAGAGGTGTTCCTCAG 58 292984 293002 TCAAGCTATGTCAGTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spen FBgn0016977 FBtr0078122 2 1 3 81 2L 199974 200131 CATAACACCGAATGATTCTACG 59 200173 200191 ACCTCGCATTAAATGATGC 58 NA Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437 1 6 10 94 2L 110793 110811 GAGATCACGTCTAAGGCTG 59 110869 111916 AAATCGAAACCCTTGGAGG 59 NA Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437 3 6 10 141 2L 110859 110877 TATGATGACTCCTCCAAGG 57 112011 112699 ACATGATACCCTGATCTCC 57 NA Drosophila melanogaster 50 roX1 FBgn0019661 FBtr0070635 2 1 2 60 X 3756078 3756096 TCGATCATCAGTCTTTGGC 59 3755966 3756056 CACTCTAGCTAATTTCACGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41353 FBgn0083995 FBtr0111193 2 1 1 109 X 22366212 22367397 GAACGATTCGGCTTATGAC 58 22381921 22381940 CCAATGTAATATCTCCTCGG 57 NA DesignNoJunction Drosophila melanogaster 50 Sdic1 FBgn0067861 FBtr0089604 3 1 1 115 X 20072386 20072404 TAAGCGTCTACAATGTGCA 59 20070434 20072307 ATCAAATGCAAGCACATCG 59 NA Nonspecific Drosophila melanogaster 50 CG12204 FBgn0031022 FBtr0074783 1 1 1 76 X 19388100 19388118 TCCTTTGATGATCTGCAGG 59 19388042 19388060 TTGGTGTGCTTTAGAACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 inx5 FBgn0030989 FBtr0074698 3 1 1 66 X 19063544 19063855 TTTCCTCATCAGTGTGGTG 59 19063496 19063514 ATACTTCGACCAGAATCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9911 FBgn0030734 FBtr0074243,FBtr0074241,FBtr0074242,FBtr0074244 1 4 4 80 X 16188807 16188825 AAATCTGAAGGAAGACTGC 57 16188675 16188763 ATGATAGGTGTACCTGGTG 58 NA Drosophila melanogaster 50 CG17209 FBgn0030687 FBtr0112987 3 1 1 107 X 15662007 15662093 AATTGGATGTTCGGAACCA 59 15662164 15662182 TAGTGAGGCACTCAATCTG 58 NA Drosophila melanogaster 50 CG12239 FBgn0029810 FBtr0070814 2 1 1 145 X 5688046 5688065 TACTTCTTGACTCCCAAGTG 58 5688173 5688252 CTCATTCAGTGCATGACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mnt FBgn0023215 FBtr0070579,FBtr0070578 3 2 3 85 X 3593046 3593151 TTCCAATAGTAATGGAGCGG 59 3593199 3593217 GGTCATAGCACTCCTTCAG 59 NA Drosophila melanogaster 50 CG40955 FBgn0085544 FBtr0113957 1 1 1 249 U 9989962 9989980 GAGTCATCGATCCATCAGC 59 9989668 9989749 ACAGTGTTACCTTTCTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11093 FBgn0039932 FBtr0089228 3 1 1 141 4 985526 985544 ATACCAATGAAGTCGACGG 59 985308 985422 CTACAAAGTTCTGTTGCAGC 59 NA Drosophila melanogaster 50 snoRNA:Psi28S-3186 FBgn0086662 FBtr0091697 1 1 1 61 3R 1423823 1423841 ACACTTGTTCAACTTGCAG 58 1423780 1423800 CAAGAGTCAGTATACCAAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1340 FBgn0039797 FBtr0085699 1 1 1 126 3R 26552753 26552771 TTGCTGTAGGTGGAAATGG 59 26552859 26552939 GATCGGTTAAAGTTGTAGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kul FBgn0039688 FBtr0085460 1 1 1 73 3R 25555259 25555339 CAACTTTGGATCACCACAC 58 25555373 25555394 GGGCAAACATAATGAAGTTACC 59 NA DesignNoJunction Drosophila melanogaster 50 Sirt7 FBgn0039631 FBtr0085364 2 1 1 123 3R 24882026 24882265 GAAGGGTCTCGATGATACTG 59 24882351 24882369 TATATCTCTACCCGCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr98d FBgn0046885 FBtr0085188 3 1 1 88 3R 23372935 23372954 GCAAATGGAGCATTTAAAGC 58 23373004 23373080 ATAAGGTGACTACCATCCCT 59 NA Drosophila melanogaster 50 CG5886 FBgn0039379 FBtr0084907 3 1 1 177 3R 21677876 21677895 AAGTCCGTAAAGAACGAGAG 59 21678034 21678160 GCAGCTTTAACTTCTTGGTC 59 NA Drosophila melanogaster 50 CG31093 FBgn0051093 FBtr0084917 1 1 1 99 3R 21616049 21616135 TTCGCTATAGTGATCGAGG 58 21615968 21615986 GAGATAACGGTCGATTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slo FBgn0003429 FBtr0100632,FBtr0100623,FBtr0100629,FBtr0100624,FBtr0100633,FBtr0084683,FBtr0100638,FBtr0100635,FBtr0084685,FBtr0084684,FBtr0100627,FBtr0100631,FBtr0100636,FBtr0100634,FBtr0100622,FBtr0100625,FBtr0100637 1 17 17 80 3R 20501030 20501365 TTATACATCTGCTGGAGAACTC 59 20501404 20501424 AATAGACACAGGTCCAATACG 59 NA Drosophila melanogaster 50 VAChT FBgn0015323 FBtr0083671 1 1 1 60 3R 14538634 14538653 CTCGTGATTGTATCGATAGC 58 14538673 14538694 TCGGTACTATCACCATATACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7709 FBgn0038642 FBtr0083687 1 1 1 163 3R 14518346 14518364 GGTGGCTTTGTCTTTAGGT 59 14516621 14516639 TTGATGAGCTTCGAATGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG12784 FBgn0038356 FBtr0083169 2 1 1 60 3R 11588990 11589009 CTGATAGTGATCAGCTTTGC 58 11589032 11589050 GTATGGCCAGAGATACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18519 FBgn0038348 FBtr0083152 2 1 2 89 3R 11365785 11365869 AACTAGAAGGTCTCATTCAGTG 59 11365717 11365735 TTACAAACGCACAATGGAC 58 NA Drosophila melanogaster 50 CG14872 FBgn0038346 FBtr0083156 2 1 2 92 3R 11334994 11335012 TAGCTCCCTGATCTATTGG 57 11334271 11334938 CAGTAACCGGAGAGTAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tefu FBgn0045035 FBtr0110874 2 1 1 80 3R 11064032 11064050 GCGTGATCTTATCAGACCA 59 11063916 11063989 TAGGGAAACTTGGAAATGGG 59 NA Drosophila melanogaster 50 CG3987 FBgn0038292 FBtr0083026 1 1 1 105 3R 10965776 10966069 ATTCAATGCTGAAACTGGG 58 10966136 10966156 GGAGTATGTACCACTATTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5999 FBgn0038083 FBtr0082659 3 1 1 70 3R 8568757 8568775 CTATATGCAAAGCCTCGGT 59 8568649 8568726 CCTTGTACCAATTTCGATTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Men FBgn0002719 FBtr0082660,FBtr0082661 3 2 2 179 3R 8539998 8540016 CTCTTGGTATTGCCAACCT 59 8539781 8539799 AAGTATCGATGGGTTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6753 FBgn0038070 FBtr0082669 3 1 1 62 3R 8467005 8467280 CTATGCCTCATCGGATGTG 59 8466961 8466979 CAAAGGAGGTAGGCTAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11722 FBgn0037777 FBtr0082205 2 1 1 81 3R 5870899 5870920 CAAGCTCAATATGAAAGACTCC 59 5870773 5870858 TCGCTTGATAAATCGATCCT 58 NA Drosophila melanogaster 50 Pnn FBgn0037737 FBtr0113210 1 1 2 66 3R 5567628 5567646 ACGATACTGCAATAGACGA 58 5567675 5567925 AAAGACTTATCCAACTGCTC 57 NA DesignNoJunction Drosophila melanogaster 50 Taf1 FBgn0010355 FBtr0081686,FBtr0081685,FBtr0081684 3 3 3 104 3R 2475727 2475745 AATATACACCGTGGGTCAG 58 2475813 2475888 CGGTAAATAAACACCTGCA 58 NA Drosophila melanogaster 50 plx FBgn0004879 FBtr0078718,FBtr0078719 1 2 2 80 3R 1536521 1536539 ACCATCACCTAGAAATGCT 58 1536583 1536668 TCGAAGATTGAGCAAACTG 58 NA Drosophila melanogaster 50 Dip2 FBgn0040466 FBtr0078893 1 1 1 60 3R 470787 470909 ACTACAATTGACGCAGTCC 59 470745 470763 CAATGGAAGATTCCTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40400 FBgn0058400 FBtr0111160 3 1 1 60 3L 24524239 24524640 TGCTTATACCCGTTCACAG 59 24524197 24524216 AGTTAGTCCATTTCGATCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32450 FBgn0052450 FBtr0078501 2 1 1 66 3L 22323201 22323219 GTTCCCTTAATTCTGGCCT 59 22323249 22323326 CCACTGTATGCATACTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12983 FBgn0037040 FBtr0114618,FBtr0078332 3 2 4 119 3L 20956877 20956895 AGGTGGTTATCGTGAAGAC 58 20956707 20956794 TGATCTCATCGTGGTTCTG 59 NA Drosophila melanogaster 50 CG7017 FBgn0036951 FBtr0074856 1 1 1 72 3L 20204842 20205131 GAATAGAGCTAGCGGTGTC 59 20204788 20204806 TTCAAAGTCCTCGATCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 noe FBgn0026197 FBtr0110844,FBtr0110845 1 2 2 194 3L 17393782 17393800 ACATCTAGTAACACGACGC 59 17393606 17393624 GCCTTAAACGTCTCTATGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG33060 FBgn0053060 FBtr0075374 1 1 1 96 3L 16324145 16324163 AATCAGCTTAGAATCGCCC 59 16324223 16324561 AGTCTTATTCGGACTGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 comm3 FBgn0053209 FBtr0075589 2 1 1 95 3L 15625073 15625092 GATTGGAGTCATCCTTACAC 57 15607122 15625015 TATGAGTTCTTCCACTGCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10743 FBgn0036376 FBtr0075814,FBtr0075813 3 2 2 100 3L 13507884 13507963 CTATGAGGACAATTGCCGA 59 13508025 13508045 GCATCTTTAGGTTTAGCTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 SRm160 FBgn0036340 FBtr0075883 3 1 1 253 3L 13031739 13031757 TATTCTCGCTCTCCAAGAC 58 13032044 13032062 TTATAGCGATTCTGTTGCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG10646 FBgn0036292 FBtr0075972 1 1 1 60 3L 12496790 12496811 CAATCAGGTTCACTTAATCCAG 59 12496700 12496769 AAAGACCTTTGATTGCACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32100 FBgn0052100 FBtr0076006 2 1 1 159 3L 12260743 12260868 TGGATGAGGTCAAAGACAC 59 12260991 12261009 TTCGAGTTCTCCATTTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14135 FBgn0036193 FBtr0076111 1 1 1 259 3L 11685459 11685540 TATGCTCCTTAAAGCGTGAG 59 11686317 11686335 ATTCTTCAGAGATCCAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4623 FBgn0035587 FBtr0077167 1 1 1 231 3L 5135527 5136193 AGTTCTTATGGTCTTCTACGAG 59 5136443 5136461 GAATTCCTTGGAGTTGTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7447 FBgn0035539 FBtr0073291,FBtr0073292 2 2 2 102 3L 4402064 4402082 ACGTCATCGATCACAAGAC 59 4402147 4402234 GAGCAAATAGGTTTCATGCA 58 NA Drosophila melanogaster 50 CG12079 FBgn0035404 FBtr0073113 1 1 1 221 3L 3159215 3159291 CTAAGAAGGCGGATAAGCC 59 3159012 3159030 CAACCAGGTTGGTAAACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9004 FBgn0035336 FBtr0072890 2 1 1 63 3L 2374623 2374641 AGAGGAAGAACAAAGCGAG 59 2374665 2374739 GTCCTCTTTAATCTTAGGTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13810 FBgn0035313 FBtr0072870 3 1 1 230 3L 2186149 2186167 TTCTCCTTGGGTTACTACG 58 2186360 2186506 ATAACTAACAGCCAGCTGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG32313 FBgn0052313 FBtr0072830 3 1 1 111 3L 1545555 1545573 CTTAATCCTGGAGGCTCAC 59 1545394 1545481 CCTGACTATTTCATCTGCGT 59 NA Drosophila melanogaster 50 gol FBgn0004919 FBtr0072460,FBtr0072459 3 2 2 138 2R 20963227 20964697 GAACATCAGTGCTGTTTGTG 59 20963052 20963070 GTAACAGAGCAGAGATTGC 58 NA DesignNoJunction Drosophila melanogaster 50 Nplp1 FBgn0035092 FBtr0072443 3 1 2 83 2R 20925036 20926574 CAGAGAAGCGATTCCTAGG 59 20926620 20926639 GAAACACTGCTTACAAACGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 RpL19 FBgn0002607 FBtr0072406,FBtr0072405 2 2 2 131 2R 20856732 20856995 TGAGTTCTCTAAAGCTCCAG 58 20856554 20856572 TAAGCTTGCGAATGTTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12848 FBgn0040666 FBtr0072437 3 1 1 75 2R 20650232 20650250 CATGGACCGTAAGTTTGAG 58 20650175 20650193 CTTGTAGTTCAGGTTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10339 FBgn0034972 FBtr0072288 1 1 1 85 2R 19967654 19967672 ATCATACAGTCCGACTCGA 59 19967256 19967605 CCATCAGGTACAAAGACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13511 FBgn0034759 FBtr0071863 3 1 1 222 2R 18547262 18547280 GAAATGGTGACCGTAACCA 59 18547465 18547542 AGCAGCAGATATACAAGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tbp FBgn0003687 FBtr0071679 1 1 1 183 2R 17574322 17574340 CAATCCTAAGCGATTTGCG 59 17574093 17574175 AAAGTCGAGGAACTTTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16926 FBgn0040732 FBtr0086499 2 1 1 221 2R 15388351 15388439 TAAGTGTTGTTAAGATGGCC 57 15388073 15388092 AATAGCGATTGTACAATCCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG15096 FBgn0034394 FBtr0086633,FBtr0086632 3 2 2 113 2R 14697627 14697645 CTATTCTTTGCCCTTACGG 57 14697466 14697550 CGACCAATTATACTCGGGA 58 NA Drosophila melanogaster 50 CG9000 FBgn0034176 FBtr0087059 2 1 1 62 2R 12889303 12889321 TCGTAGTCATCGAGAATGC 59 12889108 12889277 TTTGGTACACTTTCACCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6262 FBgn0034121 FBtr0087154,FBtr0100615,FBtr0087152 3 3 5 116 2R 12247645 12247751 CAAATGTTTGTCGAGAAGC 57 12247831 12247849 CTTTATTTCCGGGTCAGAG 57 NA Drosophila melanogaster 50 mRpL34 FBgn0083983 FBtr0111011 2 1 1 153 2R 11986504 11986585 CAAGGAATGCTCCAAAGGA 59 11986699 11986720 CGTGGACATTAATTCTCTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33462 FBgn0053462 FBtr0087284 1 1 1 93 2R 11584621 11584715 CTTGCTAATAACCGTTCGC 59 11584772 11584790 ATTGTACTCCTGGAAGGGT 59 NA Drosophila melanogaster 50 Cyp6a19 FBgn0033979 FBtr0087453 1 1 1 60 2R 10766342 10766361 GGAATACGATTCTATGCAGG 57 10766381 10766456 CCTTAGCGATTCATTGATAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cg FBgn0000289 FBtr0087526,FBtr0112795,FBtr0112794,FBtr0112796,FBtr0087528,FBtr0087527,FBtr0087529 2 7 7 85 2R 10066088 10066174 ATTATGCACTCTCGCTTCC 59 10066223 10066241 ACCAATTGAAACTTGCGTG 59 NA Drosophila melanogaster 50 Amph FBgn0027356 FBtr0087828 2 1 1 98 2R 8495131 8495153 CCTTGTATGACTCTAGGATACTG 59 8495211 8495430 CCGAGTAAATCTTAGCCGT 59 NA Drosophila melanogaster 50 CG13167 FBgn0033706 FBtr0088000 3 1 1 84 2R 8145381 8145474 TGTGGTAATACCCATCCTG 58 8145522 8145540 CAGGCGATAGAAATCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp47F FBgn0033629 FBtr0088152 1 1 2 236 2R 7265746 7266039 TAACGACATGCGAATCTCC 59 7265469 7265487 TCCACAATGAAGATGACGG 59 NA DesignNoJunction Drosophila melanogaster 50 Or46a FBgn0026388 FBtr0088331 1 1 2 60 2R 6029371 6029389 CTCCTGAGCACCTTTAACC 59 6029413 6029492 TGACGATAGAACCAAAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8235 FBgn0033351 FBtr0088676 2 1 1 120 2R 4815544 4815562 AATTACGGCCAGAATTGCT 59 4815386 4815460 AAATCTCGGCTTCAATGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11669 FBgn0033296 FBtr0088757 3 1 1 60 2R 4357616 4357635 ACGGATCCACTAAATATGGA 57 4357351 4357593 GAGATGTAACGCTTCACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lcp1 FBgn0002531 FBtr0088763 2 1 1 255 2R 4318618 4318700 AAGTTTGTCATGATCTGCG 58 4318381 4318399 CGACGTACTTAACCTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30382 FBgn0050382 FBtr0088894 3 1 1 250 2R 3718957 3719037 CTCTACCAAGTGGAGTACG 58 3718437 3718455 TACTTGTAGCGGAAGTTGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Eb1 FBgn0027066 FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130 1 5 5 84 2R 2642342 2642416 CAAATCAGGTGATGGATATGC 59 2642460 2642480 TCAATATCCCGCAACTTAGAG 59 NA Drosophila melanogaster 50 Ogt FBgn0040295 FBtr0086085,FBtr0086084,FBtr0086086 2 3 3 80 2R 1208108 1213317 GAATATTTGATAGAGCTGTGGC 59 1213356 1213376 CCAAATTGCCATGAACTACAG 59 NA Drosophila melanogaster 50 CG40127 FBgn0058127 FBtr0111266 3 1 1 97 2R 75327 75346 CCTCATTGAGGACTTACCTC 59 75182 75267 AGCAGTTGTAGGCATTCTG 59 NA Drosophila melanogaster 50 CG14401 FBgn0032900 FBtr0081430 3 1 1 187 2L 20870745 20870834 AAGTACCATGAGGGAATGC 59 20870984 20871003 GGTAGTGTGGATAATCCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15270 FBgn0028879 FBtr0080703,FBtr0080702 1 2 2 81 2L 15091215 15091301 GAGAAACTTAAAGAGCAACTGG 59 15091343 15091361 AATAGGGAATCGCAGACTC 58 NA Drosophila melanogaster 50 CG4103 FBgn0028925 FBtr0080727 2 1 1 68 2L 15009376 15009450 GCTCTCAATGTGATGAATGC 59 15009327 15009345 GTAGGCGAGGACAATATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or33b FBgn0026391 FBtr0080279 2 1 1 208 2L 11936908 11937108 AAATAGTGGAATTACTGCGC 58 11937279 11937297 CATCTCCACGGATATCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scat FBgn0011232 FBtr0079809 3 1 1 131 2L 9431784 9431803 GTATCAGAAAGCTATCGACG 57 9431897 9432294 GATTTCGCAGGTGATTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scat FBgn0011232 FBtr0079809 1 1 1 129 2L 9431786 9431804 ATCAGAAAGCTATCGACGG 59 9431897 9432294 GATTTCGCAGGTGATTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fbp2 FBgn0000640 FBtr0079808 2 1 1 67 2L 9427244 9427322 ATGGGCATGAATCTGACTG 59 9427353 9427371 TGTGTCTTGTCCATGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9463 FBgn0032066 FBtr0079744 2 1 1 120 2L 8767714 8767733 AATTTGGCTGGCTATTATCG 58 8767556 8767634 GCTCATTGACATACTTGATCAG 59 NA Drosophila melanogaster 50 CG15630 FBgn0031627 FBtr0077418 2 1 1 60 2L 4738299 4738317 AAAGGCGAAATTATACGCG 58 4737711 4738275 GTTCTGTCGATGTTTGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17258 FBgn0031496 FBtr0077668 1 1 1 211 2L 3033073 3033091 TCCTTAAAGAGAAGCGTCG 59 3032820 3032898 GTTCTTTGTGATCAACCGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3165 FBgn0031484 FBtr0077642 3 1 1 76 2L 2977471 2977490 AATTGAATGTGCTCTTCCAG 58 2977529 2977603 CAAGTAGTTGCTCAGACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3557 FBgn0031423 FBtr0077790 1 1 1 102 2L 2385444 2385517 GTCGAATGAAGGATCAGCT 59 2385360 2385378 TGAAGATGGATAAGCCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lectin-22C FBgn0040105 FBtr0077859 1 1 1 67 2L 2036509 2036527 ATGTACGATTACCCATGCC 59 2036043 2036481 GAATTTAAATCTTCCTCCTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11490 FBgn0031233 FBtr0078125 3 1 1 78 2L 208569 208587 ATAGTTAACAACTTGCCCG 57 208749 208767 TCTGAAACTCTAGCCACTG 58 NA DesignNoJunction Drosophila melanogaster 50 mt:tRNA:F FBgn0013693 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG17450 FBgn0040028 FBtr0070056,FBtr0070057 2 2 2 60 X 21478064 21478082 AACAACTTGAGGAACTCCC 59 21478022 21478040 CCTGCTTCGAGATCTTCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 1 7 7 80 X 16273085 16273103 TTTGGTTATGCATGAGCAC 58 16273145 16273233 CAGAAGGCACATTTGTTATCC 59 NA Drosophila melanogaster 50 CG32626 FBgn0052626 FBtr0073830,FBtr0073833,FBtr0073832,FBtr0073831 2 4 4 80 X 13726180 13726259 GATCATAAAGGAAGTGGCCT 59 13726119 13726138 GACTTGCCATAGATGGAGAG 59 NA Drosophila melanogaster 50 CG32627 FBgn0052627 FBtr0073814,FBtr0073815,FBtr0113441,FBtr0073813 3 4 4 131 X 13606925 13607018 CAAAGCCATGATTAGAAGACTG 59 13607110 13607128 GTTAACTTCTTCTCCGGGT 58 NA Drosophila melanogaster 50 sdk FBgn0021764 FBtr0070131 3 1 4 93 X 640088 640106 ATAAATGGTCCTTCTGGGC 59 640325 640558 GTGAGTCGTAAACAAATGACG 59 NA InUTR Drosophila melanogaster 50 elav FBgn0000570 FBtr0114366,FBtr0070091,FBtr0100254 3 3 3 61 X 412376 412394 ATTCGATTCGATAAGCGGG 59 412333 412351 GGTGTAGTACCGTTCAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2053 FBgn0039887 FBtr0085873 2 1 1 60 3R 27864627 27864648 TCTACTGAAATCAGATCATCCG 59 27864669 27864687 TGGAATTAATTCAGTGCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycG FBgn0039858 FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799 3 5 5 97 3R 27426466 27426484 ACTTCCACATCAAGGAGTC 58 27426317 27426407 ATCAGGAATCCTCATGTACTG 58 NA Drosophila melanogaster 50 Axn FBgn0026597 FBtr0085554,FBtr0085553,FBtr0085555 1 3 3 93 3R 25858742 25858817 CCTTTCAGGTGATACCTCG 59 25858874 25858892 AACTTGGGTATCAGCAAGG 59 NA Drosophila melanogaster 50 CG10011 FBgn0039590 FBtr0085319 1 1 1 60 3R 24435946 24435964 CATCTCTAGTCAGTCCACG 58 24435841 24435859 TTGCTGTGTAAAGGTAAGC 57 NA DesignNoJunction Drosophila melanogaster 50 veli FBgn0039269 FBtr0084787,FBtr0084788 3 2 2 114 3R 20890641 20890659 GAATAATACCTGGAGGCGT 58 20890475 20890493 TTTAATAGCTCTACGGCCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG33111 FBgn0053111 FBtr0084529,FBtr0084530,FBtr0100312 2 3 3 120 3R 19633221 19633305 AAATTCACAATCTCACCAGC 58 19633120 19633138 ATCTTGAAGAGCTTTCGCT 59 NA Drosophila melanogaster 50 DNaseII FBgn0000477 FBtr0083538 2 1 1 60 3R 13845862 13845881 TTGAAGTACCTGTACGTGAC 59 13845904 13845922 TGAACTTTCCCGACATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rin FBgn0015778 FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082800,FBtr0082796 3 5 5 67 3R 9476734 9476752 ATTACCTACGACGATCCTG 58 9476897 9476915 TTCTCCGGGAAGTATAGGG 59 NA DesignNoJunction Drosophila melanogaster 50 yellow-e3 FBgn0038150 FBtr0082759 3 1 1 69 3R 9229738 9229756 TTTACAGTGAGCCTCAGTC 58 9229622 9229640 TAAAGGAGTTCAGCGTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 plx FBgn0004879 FBtr0078718,FBtr0078719 2 2 2 74 3R 1536521 1536539 ACCATCACCTAGAAATGCT 58 1536577 1536662 ATTGAGCAAACTGCAACTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG32452 FBgn0052452 FBtr0078524,FBtr0078523 1 2 2 60 3L 22711289 22711310 ATATGTTGGATATGAGGCAGAG 59 22711330 22711349 TTATCCATAATCTCGCCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hr78 FBgn0015239 FBtr0078392,FBtr0078390,FBtr0078389 1 3 4 91 3L 21488964 21489534 CATGCGAAGTGATTCTGTG 59 21488891 21488909 CAGAAGTGGATGAGCTACC 59 NA Drosophila melanogaster 50 CG5130 FBgn0037000 FBtr0078220,FBtr0078221 1 2 2 80 3L 20478514 20478599 TTATCCCTACATGAAGGAATCC 59 20478455 20478473 GTTCGCTCAAAGATCTCCA 59 NA Drosophila melanogaster 50 CG8798 FBgn0036892 FBtr0074967,FBtr0074968 1 2 2 80 3L 19603760 19603779 ATTTAGGAGCATCCCTTTCC 59 19603641 19603719 GTAGACGTTCTGGGATATCTG 59 NA Drosophila melanogaster 50 Tollo FBgn0029114 FBtr0075607 3 1 1 60 3L 15231048 15231069 GCTAGCTCTATACCAAATAGTG 57 15231089 15231108 TCTTGGAGATCTGGTTATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wls FBgn0036141 FBtr0076219,FBtr0076218 1 2 2 60 3L 11161809 11161828 ATTTGGCTGTTGCTTAAGAC 59 11161768 11161787 AGAACCATATCATGATGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 desert FBgn0040229 FBtr0076575,FBtr0113320 2 2 2 75 3L 8747583 8752435 CTACCGCAGTTATACACCC 59 8752474 8752551 GGAGGTTCCATACGTTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 ago FBgn0041171 FBtr0073246,FBtr0073247,FBtr0073245 2 3 3 100 3L 4247723 4247742 AAATTGTGGGACGTTAAGAC 58 4247576 4247660 GTGTCGTTTGCTCTAATCC 58 NA Drosophila melanogaster 50 CG32264 FBgn0052264 FBtr0113431,FBtr0113430,FBtr0073188 3 3 5 138 3L 3718987 3722173 CAATAACTATTCGCTCAACAGG 59 3718870 3718888 GTAGACGATATGGCCATCG 59 NA Drosophila melanogaster 50 Patj FBgn0067864 FBtr0072781,FBtr0072780,FBtr0072779 1 3 3 111 3L 1800627 1800645 AGTAAGGGACTCCCTAGAC 58 1800780 1800798 GTAGTACTTGTGACGGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Nplp1 FBgn0035092 FBtr0072443 1 1 2 106 2R 20925012 20925030 TCGACTGGAACGATTATCG 59 20926620 20926638 AAACACTGCTTACAAACGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG6393 FBgn0034685 FBtr0071752,FBtr0071751,FBtr0071750 1 3 4 80 2R 17956169 17956254 GATAATTGAATTCCCAGCAGTG 59 17956295 17956313 AAGGGAAGGATGTACTGGT 59 NA Drosophila melanogaster 50 HmgD FBgn0004362 FBtr0071708,FBtr0071709 2 2 2 164 2R 17603110 17603202 GAAGGACAAGTCTGAGTGG 59 17603330 17603348 TCCTTCTTGCTCTTCTTCG 59 NA Nonspecific Drosophila melanogaster 50 Ate1 FBgn0025720 FBtr0086319 3 1 3 97 2R 16144010 16144028 CTCCTACTCAACGAAATCC 57 16143731 16143949 CTAACACGATCTTTAGCCG 57 NA Drosophila melanogaster 50 Gint3 FBgn0034372 FBtr0086656,FBtr0086654,FBtr0086655 1 3 3 105 2R 14546145 14546222 ATGACTGCAAACTCATTCC 58 14546058 14546076 AGCATTAGAAGGTCTTCCT 57 NA Drosophila melanogaster 50 PR2 FBgn0013955 FBtr0087777,FBtr0087776 3 2 2 87 2R 9036510 9036531 GTGAAACCTATTTCTGTGAAGG 59 9036382 9036463 GATCAATCATCGACCTAGCA 59 NA Drosophila melanogaster 50 mXr FBgn0050361 FBtr0088756,FBtr0088755,FBtr0088754 2 3 3 81 2R 4367409 4367427 GTTATTTGCACGGTCTACG 58 4366969 4367365 ACATGGTGAATCCAATATGC 58 NA Drosophila melanogaster 50 gp210 FBgn0033039 FBtr0086044 3 1 1 80 2R 1652592 1652611 AATCTCCTGGAAAGTAAGCC 59 1652651 1653011 CCACTCTGATACTCTATTCCTG 59 NA Drosophila melanogaster 50 Spf45 FBgn0086683 FBtr0111239,FBtr0111241,FBtr0111240 2 3 3 60 2L 22960455 22960473 TTGTAGCTAAACAGGGAGG 58 22960413 22960431 ATGGACATTTCTTGGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080905,FBtr0080906 2 2 13 81 2L 16774845 16775217 TGAGATCTTCGAGTACAACG 59 16775258 16775279 GATATGGTTAAAGAACTGCTGC 59 NA Drosophila melanogaster 50 Sfmbt FBgn0032475 FBtr0080492,FBtr0080491 2 2 2 110 2L 13172240 13172323 TCGGATTGGTTCTGTTACC 59 13172148 13172167 GAATGTACGAGAGTCGTAGC 59 NA Drosophila melanogaster 50 Vha68-2 FBgn0020367 FBtr0080419,FBtr0080420,FBtr0080418 1 3 3 103 2L 12977895 12977980 TCCATGAAGTTCAAGGACC 59 12978047 12978065 TCCTCCAGATTTCTGAAGG 58 NA Nonspecific Drosophila melanogaster 50 CG16833 FBgn0026147 FBtr0080152,FBtr0080150 2 2 3 83 2L 10990774 10991068 ATAACATACTCTCGGAACGC 59 10991114 10991132 CACGGTTGTAGAAGTACGA 59 NA Drosophila melanogaster 50 pes FBgn0031969 FBtr0079553,FBtr0114550,FBtr0079552 1 3 3 86 2L 7988318 7988403 CCGGGTATTACCTTGTATGAG 59 7988252 7988270 AATTTCCTCTGATACGCGT 59 NA Drosophila melanogaster 50 stai FBgn0051641 FBtr0079196,FBtr0079197 1 2 3 178 2L 6122168 6122186 GTGACATGAAGGAGAAGCT 59 6122398 6122706 GATTGTGTTATGCTCCTTTAGG 59 NA Drosophila melanogaster 50 eIF-4a FBgn0001942 FBtr0079178,FBtr0079175,FBtr0079177,FBtr0079176 2 4 4 90 2L 5984935 5985036 ATTCATAGAATTGGTCGCG 57 5985089 5985108 TATCCTTAAGGATTCGTCGA 57 NA Drosophila melanogaster 50 Rtnl1 FBgn0053113 FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039 3 7 7 144 2L 4994705 4994794 CCCTTTAAGGATTACCTGGA 58 4994580 4994601 TGATCGAATCGATGATATCCTC 59 NA Drosophila melanogaster 50 CG34394 FBgn0085423 FBtr0112638,FBtr0112641,FBtr0112639 3 3 4 105 2L 3363378 3363397 GCGAACTGTATTCCATAGAC 58 3363181 3363310 TGATCATCGACAGTTCTGG 59 NA Drosophila melanogaster 50 toc FBgn0015600 FBtr0110903,FBtr0077665,FBtr0077663,FBtr0077662,FBtr0077664 3 5 6 100 2L 3071761 3080665 TTCATGTCCAAAGAGCTGG 59 3071679 3071699 TGCTGTAGCAGCAATATAGTC 59 NA Drosophila melanogaster 50 CG3558 FBgn0025681 FBtr0077645,FBtr0077644 2 2 2 80 2L 2996427 2996512 TAAGCTTAGGTCCCTTTCTC 58 2996555 2996573 AGTGGAGATTGACGTACAG 58 NA Drosophila melanogaster 50 robo3 FBgn0041097 FBtr0077921 3 1 1 97 2L 1287037 1287166 ACTTTGGAAGATGTTCCGG 59 1287227 1287245 TTTGGTTGTGGAGGTAACC 59 NA Drosophila melanogaster 50 CG41423 FBgn0085644 FBtr0114088 3 1 1 66 U 2928098 2928501 GTCTCAGCAAAGGATCCTC 59 2928531 2928549 CTTTGCCTTGTACTCACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1896 FBgn0039870 FBtr0085837 1 1 1 61 3R 27570648 27570728 TTCTTGAAATTCGCTCCAC 58 27570752 27570771 TATAGAGGAGCCTCTTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6933 FBgn0036952 FBtr0074855,FBtr0074854,FBtr0074853 2 3 3 79 3L 20212743 20213445 GCAATCAATATGAGGATCTGTG 59 20212685 20212703 AGATCATCCATCGTGTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6600 FBgn0035672 FBtr0077046 2 1 1 63 3L 6062986 6063333 ATATTGGTTCTCGAGTACGT 58 6063359 6063377 TAGCGATCGACATATTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PTP-ER FBgn0016641 FBtr0071686 1 1 1 70 2R 17508772 17508847 AATTACATCAAGGGACCCG 59 17508720 17508738 ATTGTATTGGGCAGTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr43b FBgn0033202 FBtr0088945 3 1 1 70 2R 3547049 3547068 GTATATGAGGAAGGTCAGGC 59 3546928 3547016 TTATCAACGAGGTGTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876 2 7 7 116 2L 16467746 16468063 AAACTATTCCGAATCCCTGG 59 16467649 16467667 TTCTTGTAGTATGCCGTCG 59 NA Drosophila melanogaster 50 rho-6 FBgn0032415 FBtr0080359,FBtr0080360 1 2 2 236 2L 12131047 12131292 GTGCTTTATAGGTATCTGCC 57 12130762 12130780 AACAATATCAGCAGGGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 p16-ARC FBgn0031437 FBtr0077694 2 1 1 110 2L 2580567 2580647 AACCAGAATGTGAAGGACC 59 2580721 2580739 TATTAGGTCGTTCTGGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34128 FBgn0083964 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR32273 FBgn0052273 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG17167 FBgn0039941 FBtr0113729,FBtr0113728 1 2 2 91 XHet 53879 56997 CATCGATAAGCCTCCAGAG 59 57049 57070 GAAGATTAAGAACAAAGAGGCC 59 NA Drosophila melanogaster 50 CG12565 FBgn0031180 FBtr0077214,FBtr0077215 2 2 2 103 X 21313521 21313539 GGATTAGGAACGGGAACTG 59 21312769 21313456 GAAACGGTAAGATCAATGCAG 59 NA Drosophila melanogaster 50 CG15446 FBgn0031155 FBtr0077261 2 1 1 64 X 20972436 20972456 CGTTAAGATTAAAGTGGAGGG 58 20972392 20972410 TGACCATCGAATCAGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34332 FBgn0085361 FBtr0112534 2 1 1 218 X 20035133 20035152 TTAGAAATGGCAGACAAGTC 57 20035386 20035406 CATGAGCTGAAATAGGTACAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Ranbp21 FBgn0031051 FBtr0074759 3 1 1 60 X 19545094 19545114 GAGTACACAATCAAGTACCGA 59 19545054 19545075 CCTTAATGTACACCTTCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0084 FBgn0026680 FBtr0074762 3 1 1 125 X 19524175 19524280 TTCAACAAGTCCCGTAAGG 59 19524068 19524087 TATCAAATCCGAAGTGGAGC 59 NA Drosophila melanogaster 50 CG14204 FBgn0031032 FBtr0074729 1 1 1 98 X 19479666 19479743 CCTGTGATGTTCAAGAATGG 58 19479804 19479822 CATAGTACCGACCAACCAG 59 NA Drosophila melanogaster 50 CG7378 FBgn0030976 FBtr0113004 1 1 2 147 X 18800158 18801540 CTATTATCAGTCGCCCAGC 59 18801651 18801669 ATCACAGTCAACGTCATGG 59 NA Drosophila melanogaster 50 CG6891 FBgn0030955 FBtr0074632,FBtr0074631 2 2 2 212 X 18674943 18674961 AGTTCATCTTCCTGACGTG 59 18675210 18675228 CTTAGTTATCCCGGATGCC 59 NA DesignNoJunction Drosophila melanogaster 50 Ing3 FBgn0030945 FBtr0074614 3 1 1 101 X 18545398 18545416 AGAAGAAGCTAACCACAGC 59 18545315 18545333 ATTCCAGACTAATCGACGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mnb FBgn0002777 FBtr0074542,FBtr0074541,FBtr0100616 3 3 3 115 X 17764008 17764027 ATTCACTGTGATTTGAAGCC 58 17763836 17763930 ATGTAGTGGTAGATCCGCT 59 NA Drosophila melanogaster 50 CG32554 FBgn0052554 FBtr0074467 1 1 1 68 X 17746235 17746253 TATTTGATCGCCGATTTGG 58 17746185 17746203 CCGTCTCCTTATGTTAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12995 FBgn0030826 FBtr0074401,FBtr0074402 1 2 2 69 X 17103953 17103971 GATGATCCTTCTGGGTCAG 59 17103902 17103920 ATTGGAGGACACATCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4928 FBgn0027556 FBtr0074344,FBtr0074345 2 2 2 85 X 16828463 16828905 CATCTCCAGTTTGGTCCTC 59 16828954 16828972 AGAACTGCAAATCCTCCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG4829 FBgn0030796 FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337 3 5 5 93 X 16718722 16718740 CGAGAAGGGATACCATGTG 59 16718794 16718964 CAAATAGATTTGGTACTGCTCG 59 NA Drosophila melanogaster 50 CG9132 FBgn0030791 FBtr0074354,FBtr0074353 2 2 2 283 X 16693215 16693233 GATCAACATGCGGATAACG 59 16692662 16692680 ATATCTAGAACTGCACCCA 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13008 FBgn0030780 FBtr0074322 2 1 2 60 X 16606547 16606565 GCTATATGCGCTATGTGGA 59 16606589 16606607 TGATCCTCATCGGAATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9673 FBgn0030775 FBtr0074362 2 1 1 104 X 16597338 16597356 CCACAACTGATGAGGAGAC 59 16597252 16597271 TATAGGATGCAGTACCATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 disco FBgn0000459 FBtr0100384,FBtr0074250 1 2 2 63 X 16105838 16105856 CTCCTCTCCGAAATGTACC 59 16105793 16105811 GATGGTGGTTGTATTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9172 FBgn0030718 FBtr0074151,FBtr0074152 2 2 2 83 X 15880262 15880280 AAGGTCTACGACCAAATGC 59 15880197 15880215 CGAGTAATGGTAGTAGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 1 9 9 110 X 15788792 15788878 AGTTACCGAATATGGCGAG 59 15788952 15788970 TTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 Gbeta13F FBgn0001105 FBtr0074109,FBtr0074106,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107 3 6 6 60 X 15755481 15755500 GCTCATTATCCGACTAAGCT 59 15755523 15755614 CTCTTGTTAGATGGTGGCT 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 HDAC6 FBgn0026428 FBtr0074009,FBtr0074010,FBtr0074008 3 3 3 162 X 15230448 15230466 CGAGTACAACGGTTATTGC 58 15230592 15230663 GGAGAAGTAAACCACCCTG 59 NA Drosophila melanogaster 50 CG15027 FBgn0030611 FBtr0073965 1 1 1 60 X 14979286 14979304 CCTGAAACTCGACCTAGTC 59 14979244 14979264 TTTCTTAGACTGCTCCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eag FBgn0000535 FBtr0111009,FBtr0073955 1 2 2 84 X 14880360 14880378 ACTGCAATGAGTCCTTCTG 59 14880426 14884364 ATGAAGCCGCATACATACC 59 NA Drosophila melanogaster 50 CG9030 FBgn0030599 FBtr0073971 1 1 1 82 X 14848371 14848389 AACAGGACTATAGGCAACG 59 14847735 14848328 GGTTTAGACATAGAAAGGACAC 58 NA Drosophila melanogaster 50 CG12398 FBgn0030596 FBtr0073976 3 1 1 60 X 14806377 14806396 ACTCGTTTGTAATAGCTCCA 58 14806336 14806356 CGTAACTGTAGGTATCCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ag5r FBgn0015010 FBtr0073937 1 1 1 66 X 14679658 14679676 ATATGTGGTACGATGAGGC 58 14679610 14679628 TTGTAGTTCGACGGATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34346 FBgn0085375 FBtr0112555,FBtr0112554 3 2 2 107 X 13795535 13795553 TAGTTTGTTCAGAGGGCAC 59 13779464 13779482 CAATTAGATGTCCTTCGGG 57 NA DesignNoJunction Drosophila melanogaster 50 rdgB FBgn0003218 FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194 2 4 4 83 X 13663021 13663039 TATTATCCGGACAATGGCT 58 13663084 13663187 GTCAATTACGTCTACGATACG 58 NA Drosophila melanogaster 50 Tango13 FBgn0086674 FBtr0073803 2 1 2 177 X 13479962 13479980 TTAATCTGGAGGCGATGTC 59 13480121 13483968 CGATTGGCCTTTAACTTCG 59 NA Drosophila melanogaster 50 CG1640 FBgn0030478 FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769 1 6 6 82 X 13268114 13268132 ATTCAACCGTTAGACGTCC 59 13268315 13268333 ATGTTATCCAGTGTGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 hep FBgn0010303 FBtr0073748 2 1 3 85 X 12979685 12979703 AGTAGATGTGCCCAATTGG 59 12978593 12979637 AATTAGGTAACCTCTGGAGC 58 NA Drosophila melanogaster 50 CG12716 FBgn0030439 FBtr0073752 3 1 1 119 X 12869515 12869597 GAAACAAGTCCTGAGAATCCT 59 12869416 12869435 TTTGAAATTGAGGCGTTGAG 59 NA Drosophila melanogaster 50 CkIalpha FBgn0015024 FBtr0073680,FBtr0073682,FBtr0073681 3 3 3 83 X 12550117 12550136 TCTGAACTATTGTCGTAGCC 59 12550182 12550381 GTTCTGAACAGTATGCGGA 59 NA Drosophila melanogaster 50 CG15730 FBgn0030395 FBtr0073667 3 1 1 60 X 12390169 12390187 TGATAATAGTCGTCCTCCC 57 12390127 12390146 ATTGCAGAGTTCCTTATTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1578 FBgn0030336 FBtr0073607 1 1 1 80 X 11704489 11704576 GATCGATTCGATTATGAGGAG 57 11704429 11704447 GTTCTCGTAATTCCATCGT 57 NA Drosophila melanogaster 50 Ptp10D FBgn0004370 FBtr0073525,FBtr0073524 2 2 3 173 X 11567985 11568087 CATACAAATCCCAGCTCGA 59 11568224 11568242 TTTCCGTCTATGCTGTAGC 59 NA Drosophila melanogaster 50 CG1657 FBgn0030286 FBtr0073448 3 1 1 97 X 11227171 11227264 CATCATCAACTGCATCTCG 58 11227325 11227343 CTACGTATATGAGCACGGG 59 NA Drosophila melanogaster 50 spri FBgn0085443 FBtr0112690 3 1 4 60 X 10387116 10387134 GAAACCTAAACGCAAACGA 58 10387074 10387092 TCCAGTCTGTATGTTGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0230 FBgn0028342 FBtr0071438 2 1 1 188 X 10107391 10107409 GGATGAGATGAAGCTGACC 59 10107635 10107653 AAGAACTTGAGGGTCTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 su(r) FBgn0086450 FBtr0071338,FBtr0071337 1 2 2 230 X 9091234 9091310 ATCGATGATGACATGTGCA 59 9090948 9090967 GGTGTAGAAGATCTTCTCCT 57 NA DesignRelaxed Drosophila melanogaster 50 CG12106 FBgn0030100 FBtr0071306 3 1 1 61 X 9088669 9088687 GACCATCGTTGAGTTTGTC 58 9088711 9088730 CCTTGAGACGATTGATTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0071296,FBtr0112965,FBtr0071294,FBtr0071298,FBtr0071295,FBtr0071297 2 6 6 87 X 9008595 9008676 ACGAGGATGAGTTTGAACG 59 9008727 9008745 CTTGTGGTCGAGACTTGAG 59 NA Drosophila melanogaster 50 ND75 FBgn0017566 FBtr0071180,FBtr0071181 2 2 2 172 X 8143115 8143194 GCACTATTAGCAAATCCATCG 59 8142963 8142981 CTAGATAGCCACACTCTGC 59 NA Drosophila melanogaster 50 CG2256 FBgn0029995 FBtr0071115 3 1 1 102 X 7978944 7978962 CAAAGTGAATCCCAAGCTG 59 7978780 7978798 ATTTGATACCAGCTTGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 sn FBgn0003447 FBtr0071101,FBtr0071100,FBtr0071102 3 3 3 84 X 7879377 7879472 GGATCTGCATAAGATCGCA 59 7879520 7879538 GAATCGGTTCCATCATCCA 59 NA Drosophila melanogaster 50 sws FBgn0003656 FBtr0071125 1 1 2 81 X 7854136 7855218 ACACCAATGGATCTCTGTG 59 7854073 7854092 TCTTTAGGATCGCATAACGG 59 NA Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100214,FBtr0100200,FBtr0100205,FBtr0100201,FBtr0100206,FBtr0100211 3 6 15 233 X 6982728 6982746 GAAAGACACTCACTGACTC 57 6979936 6979954 AATCATTGTAACCACGACG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Spat FBgn0014031 FBtr0070913 3 1 1 226 X 6424397 6424415 GGTGAACACGATTAAGGTG 58 6424673 6424691 ATAGATCCGTCTTGATCCC 57 NA DesignNoJunction Drosophila melanogaster 50 fs(1)M3 FBgn0005390 FBtr0070892 2 1 1 85 X 5856879 5856897 AGTGATCTGATCCGAACTG 58 5856761 5856833 ACACTTAGATCTTCATCTGGAG 59 NA Drosophila melanogaster 50 CG4020 FBgn0029821 FBtr0070824 3 1 1 190 X 5801137 5801157 GGTGATCGATATCGGTAAGAC 59 5801364 5801439 GTAGCTTCATCAGGAAGGG 59 NA Drosophila melanogaster 50 CG15767 FBgn0029809 FBtr0070813 3 1 1 60 X 5684249 5684267 ATGCCCGATGAATACTTCG 59 5684290 5684309 CAAAGTGCAGAACAATCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3249 FBgn0029764 FBtr0070795,FBtr0070796,FBtr0070794 1 3 3 102 X 5309430 5309448 ACTTACCAAAGGCATTGTC 57 5309066 5309367 GATTACATTATTGGGACCTAGG 57 NA Drosophila melanogaster 50 CG15786 FBgn0029749 FBtr0070746 3 1 1 92 X 5196016 5196035 CCAATGGACCTACTATACGG 59 5196090 5196169 CAATTGCGGAATGTCTCTG 59 NA Drosophila melanogaster 50 CG32770 FBgn0052770 FBtr0070720 3 1 1 158 X 4798697 4798717 TGTGGTGGAGTTTAAGAAGAC 59 4799016 4799035 TTTACGTAGTCCTTCAGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2982 FBgn0029704 FBtr0070649,FBtr0070648 1 2 2 60 X 4214950 4214969 CTTGAGTGTTTACCAACAGC 59 4214992 4215010 AACCATGGGCATTAGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fas2 FBgn0000635 FBtr0070666,FBtr0070667,FBtr0070665 2 3 3 60 X 4048781 4097236 TGCTCTTTAATAGAACTGACCC 59 4048742 4048763 CTTGTTTGGGATAAATCTCCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14417 FBgn0040353 FBtr0070566 1 1 1 60 X 2770446 2770464 AAGTACCTACGTCATTCCG 58 2770404 2770422 CTCTGGGAAATTGAACGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2709 FBgn0024977 FBtr0070486 1 1 1 97 X 2620747 2620765 AATCACAAGCAGGTCAGAC 59 2620826 2620844 GAAGGTGTGCTTCTTATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32806 FBgn0052806 FBtr0070302 3 1 2 78 X 1683687 1683705 CCAACCCATACAATGTGGA 59 1684187 1684205 TCATCTCATCACAAACCGA 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG3795 FBgn0025378 FBtr0070278 2 1 1 243 X 1603586 1603604 TCTGTACAACAAGGTTCCG 59 1603296 1603314 CATGTTGTCACAGATGAGG 58 NA DesignNoJunction Drosophila melanogaster 50 br FBgn0000210 FBtr0070267 1 1 7 137 X 1531146 1531164 CCAATATCGATCCCTCAGC 59 1554704 1554722 TTAGAGAACGCACGTTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11384 FBgn0040363 FBtr0070251 3 1 1 60 X 1068918 1068938 CTTCTACAGGAATCTGTACCG 59 1068878 1068898 TATTACCTCATCCACATCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0110927 2 1 5 60 X 938204 938222 GGAGGAAGATCAAGTTCAG 57 938245 938264 TTATATTGTGAGAGTGCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14632 FBgn0029538 FBtr0070193 2 1 2 89 X 787265 787283 GTCGTATACGCGATATGCT 59 785610 785629 TTAACGTCTCTTCTGATTGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG5273 FBgn0040382 FBtr0070136,FBtr0070137,FBtr0070135 1 3 3 63 X 655011 655029 GAGACCTCTAACATGACCG 59 655056 655074 CACAAATAATGCCTCCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 1 8 8 60 X 551391 551410 CATTATCTCATGGGATGCAG 58 551433 551451 TATCAGCTCAAACAGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40450 FBgn0085734 FBtr0114183 1 1 1 184 U 2072953 2072971 CATTCATCATTTGACCGGA 57 2072659 2072678 CCATGTCCACTAAATAGGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG40867 FBgn0085529 FBtr0113942 1 1 1 199 U 9327269 9327287 AATCCCATTGGATACTGGC 59 9327088 9327106 TTGCCTTGTATCACAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40275 FBgn0058275 FBtr0113858 1 1 2 83 U 1839079 1839097 TAGTGTTGTTGGTGCTACG 59 1839144 1840678 TCATTATGTGATCGCTCGG 59 NA Nonspecific Drosophila melanogaster 50 sphinx FBgn0083990 FBtr0111045 1 1 3 60 4 996450 996468 TTCAAGAAGACCGATGTCC 59 996492 996510 GACTTTGACAATGCTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33521 FBgn0053521 FBtr0091471,FBtr0091472 3 2 4 192 4 1207179 1207197 TTTCGGAAATGGATTACCC 57 1208238 1208378 CTTCTCAGGTATTGTAGATCG 57 NA Drosophila melanogaster 50 activin-beta FBgn0024913 FBtr0089209 1 1 1 99 4 1099133 1099206 CGGAGAAGGGAATAGATAAGG 59 1099054 1099074 CGGATTGTATCGGTTAAATCG 59 NA Drosophila melanogaster 50 CG2052 FBgn0039905 FBtr0089129,FBtr0089128 3 2 2 85 4 402798 402816 GTGTTCCTACTGTGATCGT 59 399509 402751 ATTTATAGGGTCGTTCTCCTG 58 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 1 7 7 82 4 208987 209060 CGGATCATAGACTTACGGA 57 208923 208941 GAAGCATGGTTTAGTCAGG 58 NA Drosophila melanogaster 50 Ank FBgn0011747 FBtr0089172,FBtr0089171,FBtr0089174 2 3 4 82 4 149995 150014 AACAAGAAGTGAAACCTGTG 58 144503 149950 AAATGGTTGCGTCATTCTG 59 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156 2 9 10 81 4 103362 106346 TCCTAAGATGGGCTTAACTC 58 106387 106408 CATATCTGAACTTAGCATTGGG 58 NA Drosophila melanogaster 50 snoRNA:Psi28S-3405d FBgn0082957 FBtr0113592 2 1 1 99 3R 24428297 24428315 ATAGCAATGTTCGATGTGC 58 24428378 24428396 ATCATTGGTGCACAAACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 awd FBgn0000150 FBtr0085864 2 1 1 141 3R 27571103 27571121 TGACTTCTGCATTCAGGTC 59 27570980 27570999 CTATTCGTAGATCCAGTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sap-r FBgn0000416 FBtr0085714,FBtr0085713 1 2 2 80 3R 26709833 26709910 AGTACTACAAGATCTGCTCTG 58 26709773 26709793 GATCAATATAGGGTCGTTTGG 58 NA Drosophila melanogaster 50 CG15546 FBgn0039807 FBtr0085718 2 1 1 60 3R 26701181 26701200 AAGGATACTGAAGCAAACGT 59 26701140 26701158 GACTCGACTTTCCAGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CecA2 FBgn0000277 FBtr0085614 1 1 1 158 3R 26038004 26038022 CATCACCATTGGACAATCG 58 26038202 26038220 AGTCATCGTGGTTAACCTC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG1359 FBgn0039753 FBtr0085570 3 1 1 106 3R 26006277 26006296 TCAGTAAGATATCGCCACAC 59 26006362 26006533 GAGAACGAACTTTAATCCAGAG 58 NA Drosophila melanogaster 50 AdoR FBgn0039747 FBtr0085581 3 1 1 106 3R 25962135 25962219 ATGTGGGTGAGTATTCACC 58 25962047 25962065 GATGTTGTTGAAACAGGGC 59 NA Drosophila melanogaster 50 sima FBgn0015542 FBtr0085565 2 1 2 82 3R 25935492 25935577 CATCACATCAAAGAGTCCC 57 25935623 25935641 AAGAGAAGTCATCCTCCTG 57 NA Drosophila melanogaster 50 RpL32 FBgn0002626 FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555 2 4 5 61 3R 25871413 25871431 CGGATCGATATGCTAAGCT 59 25871308 25871326 CACTCTGTTGTCGATACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7824 FBgn0039711 FBtr0089927,FBtr0089926 1 2 2 60 3R 25684555 25684574 AAAGGAAGGACTCTTTCTGC 59 25684514 25684533 ATCACATCCTCGAACTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11897 FBgn0039644 FBtr0085387,FBtr0085386 2 2 2 80 3R 24986115 24986197 CGAAACGATTTGCAAATCTC 58 24986238 24986258 CTGATATCCGTCTGATTTGTG 58 NA Drosophila melanogaster 50 CG11880 FBgn0039637 FBtr0085373,FBtr0085372,FBtr0085371 1 3 3 73 3R 24951436 24951454 ATCACTGGATGTGACACTC 58 24951560 24951578 TTCATAGTGTCCCAGACGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG11876 FBgn0039635 FBtr0085368,FBtr0085367 2 2 4 84 3R 24939870 24940162 TCGATCACGCAAAGATACTC 59 24940207 24940227 CGTGGACTTTCAATTATGAGG 59 NA Drosophila melanogaster 50 Doa FBgn0053553 FBtr0110913,FBtr0110912,FBtr0091524,FBtr0091527,FBtr0091526,FBtr0113466,FBtr0091525,FBtr0091523 3 8 9 81 3R 24745225 24745244 CGTCATTCAAGATGATGCTG 59 24745285 24745963 TGTGGCCATGATCTTATATCTG 59 NA Drosophila melanogaster 50 CG5508 FBgn0027579 FBtr0085251,FBtr0085249,FBtr0085250 1 3 3 62 3R 23755849 23755867 GAAGTTCGAGTACCGACAG 59 23755951 23755969 ATTGCATGCTTCAGTACAG 58 NA DesignNoJunction Drosophila melanogaster 50 Hmu FBgn0015737 FBtr0085164 2 1 1 194 3R 23115223 23115241 TAAGAAGACTCTGCTGGTC 58 23115399 23115753 TTGTATTTGAAGAGACGGC 57 NA Nonspecific Drosophila melanogaster 50 l(3)mbt FBgn0002441 FBtr0085175 2 1 2 143 3R 23098743 23098763 GCAGTTCAATCGAATCATACG 59 23097907 23098569 GTTTGTTATTACCCGCACG 59 NA InUTR Drosophila melanogaster 50 CG5909 FBgn0039495 FBtr0085114 3 1 1 90 3R 22987262 22987280 CTACGGTCGGAATATACCA 57 22987334 22987476 ACAAAGATGGAAGTCCCTC 58 NA Drosophila melanogaster 50 CG6460 FBgn0039439 FBtr0085053 2 1 1 222 3R 22454161 22454180 CTCGAGAAGGAATTCTTCAC 57 22453958 22453976 GATCACCGATATCAGCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5467 FBgn0039433 FBtr0085028 2 1 1 131 3R 22424911 22424929 CTCGATGAGAAGATTGTGC 58 22426976 22426995 TATAATTCGCTCCTTGCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 dei FBgn0008649 FBtr0085009 2 1 1 60 3R 22274290 22274308 TTCCAAGGATTCCTTCGAC 59 22274332 22274350 GAACGAACTAATACAGGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nf1 FBgn0015269 FBtr0100113,FBtr0084953,FBtr0084952 2 3 3 82 3R 21814618 21814636 AACATATTCTACCAGGCCG 59 21814679 21814753 GTTTCTCCAATCTTGTATCGTC 59 NA Drosophila melanogaster 50 CG5913 FBgn0039385 FBtr0084938 3 1 1 60 3R 21720019 21720037 CCAATGAGATCATGGATCG 57 21720060 21720079 CCCACTTTAAACTGATCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lnk FBgn0028717 FBtr0084937,FBtr0084935,FBtr0084936 2 3 3 109 3R 21717659 21717678 ATGGCTACGATAATGGTCAG 59 21717750 21718182 CACTTCGTTGCAATGTCTC 59 NA Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113387,FBtr0084928,FBtr0113388,FBtr0084927 3 4 7 80 3R 21535235 21539274 GAATTGGAATGTGGCAATAGG 59 21535175 21535194 CTTGAAGCGATTCTGAATGC 59 NA Drosophila melanogaster 50 Nmnat FBgn0039254 FBtr0084749,FBtr0084750 3 2 2 120 3R 20771798 20771877 CAAGTATCAGAGCAACATTACG 59 20771958 20771976 CACCAGATCGTCTAGAAGG 58 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100632,FBtr0100636,FBtr0100637 1 3 17 82 3R 20521108 20521126 GACGCTGATCAAGAAATGC 59 20521842 20528854 CATTGCGATTGAGTACTAAGTC 59 NA Drosophila melanogaster 50 CG10232 FBgn0039108 FBtr0084471 1 1 1 60 3R 19545730 19545751 CATCGAGTATTTCAATGTCCAC 59 19545691 19545712 GATATCGCTTTCAAACCTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10182 FBgn0039091 FBtr0084486 2 1 1 88 3R 19414622 19414701 GAAAGAATCAGGACCAGCT 59 19414552 19414570 GTTGACCTCTACAATGCGA 59 NA Drosophila melanogaster 50 CG4374 FBgn0039078 FBtr0084427 3 1 1 61 3R 19236834 19236852 TCTAAGTTCCCAACAGCAG 59 19236791 19236809 CATTCCCATTATGTGCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 EloA FBgn0039066 FBtr0084375,FBtr0084374 2 2 2 65 3R 19079219 19079237 ATGAGTCAGAAGCTCTAGC 58 19079324 19079342 CACCCGAATAGATCTTGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG13830 FBgn0039054 FBtr0113272 2 1 1 88 3R 18907610 18907628 GCAAGAAGCGTGAAATCTG 59 18907430 18907561 TATCTCATCACGATTCTTGTGG 59 NA Drosophila melanogaster 50 CG13833 FBgn0039040 FBtr0084362 1 1 1 86 3R 18860008 18860026 ATATCAATGTTTCCGGAGC 57 18859824 18859958 TTACATTGGCCTTGTATGC 58 NA Drosophila melanogaster 50 CG4723 FBgn0039023 FBtr0084318 3 1 1 60 3R 18588894 18588914 TAAGACTTCGCTATGGAATGG 59 18588854 18588873 TTGCCATAGTTATAGCCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wfs1 FBgn0039003 FBtr0084335,FBtr0084334 1 2 2 63 3R 18514115 18514185 CAATGCTGCAGCTAATCAC 59 18514070 18514091 GATGTCATATAGGGTAAGACCA 58 NA DesignRelaxed Drosophila melanogaster 50 CG33110 FBgn0053110 FBtr0084264 2 1 1 80 3R 18398292 18398393 GTATATGTTCTACGAGCACCT 59 18398435 18398453 CTATCGGAGTAGTCAACCG 58 NA Drosophila melanogaster 50 CG5315 FBgn0038984 FBtr0084283,FBtr0084284,FBtr0084282 2 3 3 83 3R 18370411 18370492 CTAATTCTGATGGGCCTCC 59 18370346 18370364 AAACTTTCCAGGGAACCAG 59 NA Drosophila melanogaster 50 CG12499 FBgn0038968 FBtr0084295 2 1 1 60 3R 18269769 18269788 GGAAACTCTTACCCTTAGCA 59 18269728 18269746 TTCCTCCAATTCTACACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18596 FBgn0038953 FBtr0084216 3 1 1 98 3R 18205005 18205023 CGTACCTGTGAAGTTCTGG 59 18205085 18205171 TTTCTCAGCAGTCATGCTC 59 NA Drosophila melanogaster 50 CG5382 FBgn0038950 FBtr0084237 3 1 1 97 3R 18191038 18191056 CTCTGAAGAGTTTCCTGTC 57 18190904 18190922 CTTAATGGCCTTCAGACTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG6332 FBgn0038921 FBtr0084170 1 1 1 101 3R 17841174 17841192 AAAGAAAGCACCAAAGGTC 58 17841318 17841336 ATCTCCTCCAAATAGGCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG31178 FBgn0064912 FBtr0084138 3 1 1 63 3R 17699905 17699924 ACCGTTATGGGATACTACGA 59 17699947 17699968 CACATTGGATCAAAGGATACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab11 FBgn0015790 FBtr0084010,FBtr0084011 2 2 2 77 3R 16940758 16940776 GTTTCATAGAAACCTCGGC 58 16940817 16940984 TGCGATAGATCTCTGTGAG 58 NA DesignRelaxed Drosophila melanogaster 50 Pi3K92E FBgn0015279 FBtr0083940,FBtr0083941 2 2 2 84 3R 16457025 16457246 GCTTACACTTTCTGAAAGACG 59 16456961 16456979 CTTTCCAGGTACGATTCGT 59 NA Drosophila melanogaster 50 CG4845 FBgn0038764 FBtr0083829 3 1 1 125 3R 15851269 15851287 GTTATTGCGACTATGGAGC 58 15851375 15851457 CGATAGCATCTCTAAACTGG 57 NA Drosophila melanogaster 50 Pk92B FBgn0014006 FBtr0083818,FBtr0083819 2 2 2 81 3R 15708427 15708448 GATATGATCCTGGAGATGACTG 59 15708487 15708574 CGTACTCGTACTCGATATTAGC 59 NA Drosophila melanogaster 50 ort FBgn0003011 FBtr0083784 1 1 1 92 3R 15488647 15488771 ATAGAAGGATTGTAACCACCAC 59 15488824 15488842 GTATTATCCGCGACTCCTG 59 NA Drosophila melanogaster 50 Prp18 FBgn0027784 FBtr0083717 1 1 1 60 3R 14856414 14856432 GAGAGCATACAGACAATGG 57 14856372 14856390 TCACATCCATGTCGTAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sgs5 FBgn0003375 FBtr0083461 1 1 1 286 3R 13421296 13421314 TCTTCAGGATTGTGTCTGC 59 13421620 13421697 AAGTCAGGAATGGTTTGCT 59 NA DesignRelaxed Drosophila melanogaster 50 beat-IIb FBgn0038494 FBtr0083411 2 1 1 189 3R 13064760 13065209 CAAGTTGTGGAATTTCCGG 59 13059233 13059251 CAACCGTTCGAATGTACTG 58 NA Drosophila melanogaster 50 CG10326 FBgn0038453 FBtr0083336 3 1 1 110 3R 12470098 12470281 CCACAGTGTTTGTAATCGTC 59 12470354 12470372 ACATGAGGATGAGTAGGGT 59 NA Drosophila melanogaster 50 CG10311 FBgn0038420 FBtr0083324 1 1 1 83 3R 12177651 12177669 ATCGTCTTCTTCATCGACG 59 12176939 12177604 ATAGGTCATAATCGCGCAG 59 NA Drosophila melanogaster 50 ird5 FBgn0024222 FBtr0083236 1 1 1 64 3R 11872858 11872876 GCGAGAAAGACCTATTCGA 59 11872744 11872762 AATTATCGCACCATTGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083209 1 1 8 117 3R 11779943 11780309 TCAAATCGGACAGGTTACC 59 11780387 11780471 GGTATTATCCTTGACAGTTTCC 58 NA Drosophila melanogaster 50 Atx2 FBgn0041188 FBtr0083101,FBtr0083099,FBtr0083100 2 3 3 150 3R 11239225 11239300 TTATGCATGGGTCTTCTCAG 59 11239413 11239431 TAGTTCAGTGACGAGTTGC 59 NA Drosophila melanogaster 50 Trax FBgn0038327 FBtr0083093,FBtr0083092 2 2 2 60 3R 11187825 11187843 GATCGCGGTTAACTTTAGG 58 11187867 11187885 GAACTGGTAGACATCCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6236 FBgn0038318 FBtr0083121,FBtr0083122 3 2 2 109 3R 11151728 11151746 GTATACGGGCATCATTCTC 57 11151560 11151656 AATTTACACGGTGAATCTCC 57 NA Drosophila melanogaster 50 Zeelin1 FBgn0038294 FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034 2 4 5 121 3R 11002151 11004015 CTACAGCCGAACAATTCCA 59 11001978 11001996 GCTTGTCCCTCAAGTAGAG 59 NA Drosophila melanogaster 50 CG7026 FBgn0038276 FBtr0083007 1 1 1 77 3R 10725439 10725457 CAAGATCCTCATTGTGGAG 57 10725380 10725398 TTGGAGGTCATGTAGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cv-c FBgn0086901 FBtr0112632,FBtr0112630,FBtr0112631 1 3 3 82 3R 10225496 10230712 AGAAATCGAAGCTGTGGAG 59 10221740 10225453 ACTGATGATCTTCGTACATCTG 59 NA Drosophila melanogaster 50 NK7.1 FBgn0024321 FBtr0082941,FBtr0082942 1 2 2 81 3R 10167297 10169958 CTACCAAGAAGGAAAGTTCTG 58 10167236 10167254 CTGATATCCGGTGGTAGAG 58 NA Drosophila melanogaster 50 CG12207 FBgn0038220 FBtr0082922,FBtr0082921 3 2 3 146 3R 10116533 10124520 GCATTCGCAGTTTCAAGAG 59 10124630 10124648 ATGAGGGTCTCATTGTTCC 58 NA Drosophila melanogaster 50 CG14355 FBgn0038208 FBtr0082907 1 1 1 161 3R 9976715 9976733 TATGATGACGAACAACGCA 59 9976512 9976530 TTCATGCCAAAGTTGTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9312 FBgn0038179 FBtr0082825 2 1 1 81 3R 9591684 9591702 GATAAGCACCCAGAGTCTG 59 9591830 9591849 TAAATCGTCACTGGTGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Adgf-D FBgn0038172 FBtr0082845 3 1 1 149 3R 9530171 9530189 TGTTCACCTACGATCAGTC 58 9529987 9530059 GATTTGGCAATAGAGCTTCC 58 NA Drosophila melanogaster 50 Hrb87F FBgn0004237 FBtr0082852,FBtr0082851 3 2 2 162 3R 9484012 9484197 CGTTACTAGACAAGGTAAACAC 58 9483871 9483889 TGGTTCTGATCTTGTCTGC 59 NA InUTR Drosophila melanogaster 50 sqd FBgn0086897 FBtr0082857 1 1 4 90 3R 9470139 9470160 GACTTATACTTGGAGGATATGC 57 9468921 9470088 CAAACAGTTTCCATCAGCA 58 NA InUTR Drosophila melanogaster 50 CG8476 FBgn0038127 FBtr0082781 2 1 1 60 3R 9045604 9045625 TTTCTACCTATATGTAGCCGGA 59 9045565 9045584 GATCACGTCCAATAGAACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8031 FBgn0038110 FBtr0082719 3 1 1 80 3R 8835327 8835346 TGCTGGATATACGTACTGTG 58 8835202 8835284 ATGAAGATTCGCTTGACGA 59 NA Drosophila melanogaster 50 GstD8 FBgn0010044 FBtr0082575 1 1 1 60 3R 8206308 8206326 AGAATGCCAAGGAAGTGAC 59 8206350 8206368 TTGATTAGCTGTACACCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 svp FBgn0003651 FBtr0082564,FBtr0082562 3 2 3 133 3R 8126234 8126252 AATCCCTGCAAGAGAAGTC 59 8126349 8126615 CTCAATGACTTGTGAGGAG 57 NA DesignRelaxed Drosophila melanogaster 50 CG34307 FBgn0085336 FBtr0112503 2 1 1 60 3R 7723586 7723604 CTATGCTTCGTAGGATTGG 57 7723686 7723705 GCGAATTTGTTAGAATTGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wkd FBgn0037917 FBtr0082414,FBtr0082413 2 2 2 145 3R 7409655 7409673 ATGTGCTAAAGGCCTACTC 59 7409782 7409858 GTCCTGCAGGTATACATCG 59 NA Drosophila melanogaster 50 CG6693 FBgn0037878 FBtr0082367 3 1 1 63 3R 7046801 7046819 AAATCTTCAAGCCCATCAC 57 7046756 7046774 TCCGATTCCACATACTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ugt35b FBgn0026314 FBtr0082375 1 1 1 60 3R 6995331 6995353 GAATCTCCTCTATCGTATACTCC 58 6995293 6995311 AGAAAGTCATTCGATCCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sodh-2 FBgn0022359 FBtr0082324 3 1 1 150 3R 6703537 6703613 CTGCAATGATTATTCCGCC 59 6703727 6703745 GATCATGACCTTGATAGCG 57 NA DesignRelaxed Drosophila melanogaster 50 Fmr1 FBgn0028734 FBtr0082196 1 1 5 87 3R 5930706 5930805 GTGTTTCGAATCAAGGATCAG 59 5930639 5930657 CATTTGCAATGCTCTCCAC 59 NA Drosophila melanogaster 50 CG33784 FBgn0053784 FBtr0091785 1 1 1 98 3R 5894013 5894031 CCGACTTAGTTTACGATGG 57 5894150 5894169 CATCATTCAGAACCATTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 Fst FBgn0037724 FBtr0082101 3 1 1 75 3R 5471668 5471687 AATCAGTGGAATCCAAATGG 58 5471612 5471630 TGTTTCCGTGAGATTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8312 FBgn0037720 FBtr0082076,FBtr0082075 2 2 2 63 3R 5449440 5449459 CTCCTGCCCACTATTAACAG 59 5449485 5449503 GATCCTCGGCATTGTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8176 FBgn0037702 FBtr0113208,FBtr0113207 3 2 4 103 3R 5348606 5349271 CAATCAAGATCAGACACAACAG 59 5349335 5349353 CGTTCAATTGCTTCTTCCC 59 NA Drosophila melanogaster 50 CG8165 FBgn0037703 FBtr0082063 3 1 1 60 3R 5346086 5346104 CACTTTGGCACATCTTTCC 59 5346128 5346146 ACGCGGTTAAGTAAATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8165 FBgn0037703 FBtr0082063 1 1 1 60 3R 5344575 5344593 GGATATACAGGTTTGCAGG 57 5344615 5344635 CCAAATATAGCAGAACTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8135 FBgn0037689 FBtr0082030 3 1 1 99 3R 5232746 5232764 TGGGTCTCATCCATATGGA 59 5232885 5232905 GAGATGATGCCAATAACATCC 58 NA DesignNoJunction Drosophila melanogaster 50 neur FBgn0002932 FBtr0082001,FBtr0082002,FBtr0082004,FBtr0082003 3 4 4 222 3R 4847924 4847942 GATATAAACGGCCAACTCG 58 4847658 4847676 GATTCTCGTAGCAGATGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG13318 FBgn0037627 FBtr0081942 1 1 1 92 3R 4597896 4597977 GAGGATATCCCACTGTTCC 58 4597822 4597840 GACCACACTGATAGCTTCC 59 NA Drosophila melanogaster 50 CG14598 FBgn0037503 FBtr0081534 1 1 1 60 3R 3266774 3266793 AACCAAGAAATCGTACTACC 57 3266815 3266834 GGTCTTCAACTTATCCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst84Dc FBgn0004174 FBtr0081587 1 1 2 81 3R 3190327 3190345 TTTGGCTTCTAAAGACCGT 59 3190207 3190225 ACAGCAGTAATATCCGCAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG1041 FBgn0037440 FBtr0110774 1 1 2 97 3R 2199092 2199189 TATCAAAGCCCAACGTCTG 59 2198948 2199033 GAGTTCTTGGTCAAATTCCAC 59 NA Drosophila melanogaster 50 CG10298 FBgn0037432 FBtr0081710 2 1 1 77 3R 2169304 2169322 ATGAGCAAGTACAAGCTGG 59 2169363 2169381 TAACTTGGGCACATAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12171 FBgn0037354 FBtr0078708 3 1 1 61 3R 1459821 1459842 CATTGTAAACGTGTCTAGTGTG 59 1459863 1459882 CATTGTATGCTAAGACTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14673 FBgn0037352 FBtr0078738 3 1 1 60 3R 1452327 1452345 TAACATGGAGTTCTGTCCA 57 1452285 1452303 CAATTTCCTCTCGAAGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12161 FBgn0037296 FBtr0078831 1 1 1 196 3R 1044502 1044520 AAATTATTGAGCTGCAGGC 58 1044259 1044277 GTCGGCATCTATATTCCCG 59 NA DesignNoJunction Drosophila melanogaster 50 opa FBgn0003002 FBtr0078836 3 1 1 110 3R 679062 679080 TTTAACAGCTATGCCTCCC 59 679154 679172 GGAGAAGAGCATGGAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12587 FBgn0040685 FBtr0078853 1 1 1 115 3R 420490 420508 GTTCAGGCTATTGAAAGCG 59 420587 420605 TTCTCATCCACATCCTTCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:U49:66Da FBgn0060292 FBtr0076634 1 1 1 60 3L 8594590 8594610 TGTCTTCTTGATAGGAAGTGC 59 8594630 8594650 CTTTCAGAGGGTTAAACTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-1837a FBgn0086660 FBtr0091629 3 1 1 60 3L 5757427 5757446 TCAACACTTGCAAAGATCAG 58 5757386 5757405 AGTCCTGAATAATAGGCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arf79F FBgn0010348 FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572 2 6 7 85 3L 22862823 22862841 TTAGCTTTACAGTGTGGGA 58 22862563 22862777 GATAAGACCTTGTGTATTCTGG 58 NA Drosophila melanogaster 50 CG7148 FBgn0046301 FBtr0078448 2 1 1 60 3L 21823922 21823940 CTGAAGCTCTACTACGACC 58 21823823 21823899 TCTTTAGGTTCGCTCTATCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG32447 FBgn0052447 FBtr0078460,FBtr0078461 3 2 2 187 3L 21687570 21687588 CCCGTTCTGCTATTATCCT 58 21686807 21687419 GTCGTATAAACATGCCTGG 58 NA Drosophila melanogaster 50 CG9391 FBgn0037063 FBtr0078416,FBtr0078417 3 2 2 125 3L 21260335 21260353 TACCAGTGAATTCGGTACC 58 21260167 21260186 ATCGACATATTGAGAGCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34261 FBgn0085290 FBtr0112456,FBtr0112455 2 2 2 98 3L 21190186 21190205 GTTGTTGAATTTGCAGAGAC 57 21190265 21190284 CTGGATTTCTTGGTGATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fln FBgn0005633 FBtr0074910 2 1 1 62 3L 19983284 19983302 AATACCAAGACCACAGACG 59 19983178 19983258 TCACTGCCACTGATATTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14182 FBgn0036922 FBtr0074913 3 1 1 75 3L 19972630 19972648 ATATAACCGACCGCAAGTG 59 19972573 19972592 CACAAAGATGCAGATCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(Tpl) FBgn0014037 FBtr0074920 3 1 1 247 3L 19889938 19890020 TAATCAATTTACCGCCTGC 58 19887793 19887811 GAATTGGTCATAACGTGCG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG14104 FBgn0040786 FBtr0074926 2 1 1 64 3L 19800183 19800201 AATGAAACGTCAGAGGGTC 59 19800137 19800155 TTTAGGTCGTTGTACTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9372 FBgn0036891 FBtr0074945 3 1 1 136 3L 19600798 19600818 TATTCAACACCTACATCTGGC 59 19600916 19601111 CAGGTTAACCTCCATGAGG 59 NA Drosophila melanogaster 50 CG9368 FBgn0036890 FBtr0074942,FBtr0074944 2 2 3 124 3L 19595052 19595070 AGTTGAGAGCCAGAAATCG 59 19595818 19595836 ATATGGCATCGAAGATCCG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Shal FBgn0005564 FBtr0112853 3 1 2 277 3L 19565870 19565890 CTGTACCTGTTATCGTATCGA 58 19562902 19565397 AAATTCTCGATCCGTTGTC 57 NA DesignRelaxed Drosophila melanogaster 50 CG9279 FBgn0036882 FBtr0074976,FBtr0074975 3 2 2 80 3L 19535270 19535406 CTTCCAAAGAATCCAGTGAC 58 19535209 19535228 GGGAGACAAGGTTACTTCTC 59 NA Drosophila melanogaster 50 CG14086 FBgn0036860 FBtr0074994 1 1 1 80 3L 19272150 19272170 GTGCTGGTAATGTTTATCGAG 59 19272211 19272500 TCGCTGGTAATTATCCTCTG 58 NA Drosophila melanogaster 50 GNBP2 FBgn0040322 FBtr0075094,FBtr0075095,FBtr0075096 2 3 4 134 3L 18667368 18667387 CTATAGCATCAAGCCTCCAG 59 18667189 18667271 GGTTGGAGCATCAGATAGG 59 NA Drosophila melanogaster 50 GNBP2 FBgn0040322 FBtr0075097,FBtr0075094,FBtr0075095,FBtr0075096 3 4 4 177 3L 18667068 18667159 CCAAGCAATTGAGAATTGCA 59 18666910 18666928 TAGTTGTGAAAGTCGTCCC 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG6052 FBgn0036747 FBtr0075195 3 1 1 60 3L 17721809 17721830 GTTTATTTCTGTCCTACGACAC 59 17721770 17721788 ACTCCTCCATCGTTATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32167 FBgn0052167 FBtr0075296 1 1 1 61 3L 16998122 16998143 GCTGATAAATTTCTGGTGTTCC 59 16998082 16998100 AAGCAATTGGCAATATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 zetaCOP FBgn0040512 FBtr0075352,FBtr0075353,FBtr0075351 2 3 3 112 3L 16666237 16666255 TTCCATTAGCCTGATCCTC 58 16665631 16666161 CATCCAGAATAATGCCTCC 57 NA Drosophila melanogaster 50 st FBgn0003515 FBtr0075391 3 1 1 82 3L 16493263 16493341 GAATATAACCTGCTTTCAGGAG 58 16493384 16493402 CGTTGAAGCTGTACTTGTC 58 NA Drosophila melanogaster 50 CG33690 FBgn0053690 FBtr0091670 3 1 1 103 3L 16194898 16194983 CCCTATGATCACGATCTTATCG 59 16195044 16195065 GTGTATATGGCATAATCTCCGT 59 NA Drosophila melanogaster 50 RhoGAP71E FBgn0036518 FBtr0075567,FBtr0075569,FBtr0075568 1 3 3 88 3L 15593708 15593797 CAAGTTCAAGGTCTCTACGA 59 15593848 15593866 AGTACTCATAGTTGTCGCG 59 NA Drosophila melanogaster 50 CG6888 FBgn0036490 FBtr0075644 1 1 1 60 3L 15201035 15201056 CTCAATATTAACCAAGTGGCTC 59 15201077 15201095 GATAACCACCGGATACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10089 FBgn0036369 FBtr0075822,FBtr0075823,FBtr0075820,FBtr0075821 3 4 4 211 3L 13462070 13462088 ATCGCCATACATGACAGTC 59 13461819 13461837 GTCATGATATAGGCCACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10984 FBgn0036305 FBtr0075919 1 1 3 151 3L 12743829 12744414 CTCGTCGACAGATTCATCC 59 12744529 12744547 ATTTACCATCGTTGCTGCT 59 NA Drosophila melanogaster 50 CG6928 FBgn0036240 FBtr0076049,FBtr0076050 1 2 2 80 3L 11999277 11999598 GAACTTTGAACAGATGCTCTC 59 11999640 11999658 ATGGCTACATTTCCAAGCA 59 NA Drosophila melanogaster 50 CG14133 FBgn0036192 FBtr0076132 1 1 1 179 3L 11684206 11684224 TAGCCGCTTTACAGTTGTC 59 11683403 11684008 CATCGCTCATCATATCATTCAG 59 NA Drosophila melanogaster 50 CG6091 FBgn0036180 FBtr0076143,FBtr0076141,FBtr0076142 3 3 3 119 3L 11600443 11600549 ACTGCTACCAGTCAAATCC 59 11600342 11600361 TGTAGGGATCCAGAATAGCA 59 NA Drosophila melanogaster 50 CG6216 FBgn0036139 FBtr0076220,FBtr0076221 1 2 2 103 3L 11143173 11143247 AAATGTGTTGTGGCAAGAC 59 11143088 11143106 CTTGTTGGAGGACAAAGGT 59 NA Drosophila melanogaster 50 Mnf FBgn0036134 FBtr0076225 3 1 5 109 3L 11109260 11109278 TGGCAGAATTCCATACGTC 59 11108903 11108998 CGCGAATTATCCATGTGAC 59 NA Drosophila melanogaster 50 CG32063 FBgn0045770 FBtr0076286,FBtr0076287 2 2 2 60 3L 10459993 10460011 GAGGGTATGGAGAATGTGC 59 10460032 10460053 CAATACTTTGTAATGATCGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323 1 4 11 113 3L 9774996 9775719 ACCTGGGTAATTTGTCTGG 59 9775795 9775814 ACATATCGTCCTTCATGTCG 59 NA Drosophila melanogaster 50 CG3335 FBgn0036018 FBtr0076383 1 1 1 65 3L 9619737 9619755 TAGATGGTAATCCCGTGGA 59 9619842 9619860 CGCCATCATTATCTTGGGT 59 NA DesignNoJunction Drosophila melanogaster 50 RpS9 FBgn0010408 FBtr0076423,FBtr0076424 3 2 3 164 3L 9504210 9504228 CTGGCTAAGATCCGTAAGG 59 9503660 9503678 GTCCTCAATCTTCAGACCC 59 NA DesignNoJunction Drosophila melanogaster 50 Tsp66E FBgn0035936 FBtr0076507,FBtr0076508,FBtr0076506 3 3 3 85 3L 8919887 8921127 GCATTGAGCAATTTACACAG 58 8921175 8921193 GCTCATGAAGAACATGACG 58 NA Drosophila melanogaster 50 Cp19 FBgn0000358 FBtr0076573 2 1 1 79 3L 8723493 8723511 GAGTACAGCAAGGTGATCC 59 8723554 8723572 TTGCCATACTGGTTCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ergic53 FBgn0035909 FBtr0076626,FBtr0076625 1 2 2 123 3L 8529702 8529720 CATGAATCAGGTCAAGCAG 58 8530054 8530072 TACGCTTAGGAACAATGTG 57 NA DesignNoJunction Drosophila melanogaster 50 Cbl FBgn0020224 FBtr0076614,FBtr0076615 3 2 2 189 3L 8420110 8420195 ACTATACTGTGAAATGGGCAG 59 8420404 8420422 CACAACGATTTGTTCGGTG 59 NA Drosophila melanogaster 50 CG8543 FBgn0035787 FBtr0076863 3 1 1 60 3L 7463061 7463080 AATGTCTACACTCCCAAGAC 59 7463020 7463038 AGAAGGACTTGGTGATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sh3beta FBgn0035772 FBtr0076872 1 1 2 119 3L 7361074 7361997 ATAAGGAGGTGAAGAAGCG 59 7360973 7360991 TTTGCATCAGCTCCTTCTC 59 NA Nonspecific Drosophila melanogaster 50 CG14830 FBgn0035755 FBtr0076888 2 1 1 153 3L 7245199 7245284 AGTGAAGAAGTTGAAGGGC 59 7245064 7245082 CGTGTACTCCGAATAGGTG 59 NA Drosophila melanogaster 50 CG14829 FBgn0035751 FBtr0076893 2 1 1 63 3L 7230906 7230925 TATATCCCTGGGACAAATGG 58 7230862 7230880 AAGCTCCTGATCTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF4E-4 FBgn0035709 FBtr0076963 1 1 1 96 3L 6658183 6658201 GATGATGCGAACAAGTTCG 59 6658025 6658126 GTATGAGTAGCACATCTAACCA 59 NA Drosophila melanogaster 50 CG4669 FBgn0035598 FBtr0077171 2 1 1 60 3L 5228736 5228756 AGTCAAATCTTCATCTCACCC 59 5228778 5228796 GGTAGAGCACTACGATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 axo FBgn0026729 FBtr0073368 1 1 1 90 3L 4660401 4664136 CTTCTGGGAGATACGTCTG 58 4660329 4660347 TTTAATGGTGGTCGAGTGG 59 NA Drosophila melanogaster 50 CG13715 FBgn0035564 FBtr0073318 1 1 1 60 3L 4637501 4637520 GGGAATGGAAATGGAAATCG 59 4637460 4637478 TATTGACGCCATGGTATCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 dyl FBgn0066365 FBtr0073341,FBtr0073343,FBtr0073342 2 3 3 68 3L 4295824 4295842 GTACGATCCCTATGTGCAG 59 4295774 4295792 TAGAAATCGTACCAGGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1295 FBgn0035509 FBtr0073222 1 1 1 83 3L 4204735 4204754 CATTGAACTTGAACCTGACC 59 4205226 4205244 GATCGTACAGAGGCTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9133 FBgn0035198 FBtr0100645,FBtr0100647,FBtr0100646 1 3 3 62 3L 1254991 1255009 ATCATGGACACCATGAAGG 59 1255035 1255496 GTAGCAAACCTCGATACCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 trio FBgn0024277 FBtr0072648,FBtr0072646,FBtr0072645,FBtr0072649,FBtr0072644,FBtr0072647 2 6 6 80 3L 998873 998891 AATACATAGTCAGTGCCCA 57 998719 998831 TCAAGTTACTCAGATCCAGAC 58 NA Drosophila melanogaster 50 CG32479 FBgn0052479 FBtr0072589 1 1 1 84 3L 890876 890894 AATTGATAAGCCCACACCC 59 890942 891018 GTTGCAAATCATCTGCCAG 59 NA Drosophila melanogaster 50 CG13881 FBgn0035125 FBtr0072508 3 1 1 141 3L 278324 278412 AAGTTAAGACCAAAGACCGA 58 278516 278534 GTCTTGTGTTCCAAGAAGG 58 NA Drosophila melanogaster 50 snoRNA:Me28S-A2589a FBgn0086023 FBtr0114299 2 1 1 84 2R 17212743 17212762 ATACTGAGTGCCTAAATCGA 58 17212809 17212827 TTATCAGACAAATGCCTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33431 FBgn0053431 FBtr0086423 1 1 1 62 2R 15624955 15624973 AATACATCGGTTCTCGTCC 59 15624911 15624929 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3494 FBgn0035008 FBtr0072295,FBtr0072296 3 2 2 64 2R 20362485 20362503 CATCGATGCTAGTGAATCG 58 20362530 20362549 TGTTTCCCAAGTTCAATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL12 FBgn0034968 FBtr0072174,FBtr0072175 3 2 3 145 2R 19948090 19948209 TAAATTGGTGTACCTGCGT 59 19948381 19948399 TGATCTTCAGACCCTTCCA 59 NA Drosophila melanogaster 50 Adk2 FBgn0022708 FBtr0072163 1 1 1 150 2R 19912520 19912538 TGAAGAAGGTCATGGATGC 59 19912652 19912733 AATGTGTCGAGCTTCTCAG 59 NA Drosophila melanogaster 50 CG4324 FBgn0034956 FBtr0114534,FBtr0072197 2 2 2 116 2R 19903818 19903839 GTACTACTAGTGCTGTATAGCA 58 19903663 19903741 CAAGGTAACTGACTGTGGA 58 NA Drosophila melanogaster 50 G-salpha60A FBgn0001123 FBtr0072143 3 1 3 102 2R 19833770 19833964 AATACCAAACGCCAATCGA 59 19834030 19834128 ATACGCAGAAACTCGTCTC 59 NA Drosophila melanogaster 50 CG30410 FBgn0050410 FBtr0072005 2 1 1 65 2R 19243123 19243141 AATCCCAACATAGACGTGG 59 19243170 19243188 CTTGATCAGCACCATATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 jbug FBgn0028371 FBtr0071918,FBtr0071917 3 2 3 86 2R 18618377 18618395 TTATTCTCCCAATAGCGCC 59 18618238 18618330 TCGTAACCATTCTTACTAACGG 59 NA Drosophila melanogaster 50 CG30281 FBgn0050281 FBtr0071760 2 1 1 80 2R 18002686 18002704 AAAGATCAGGCTGGAAGAG 58 18002745 18002842 GATGGGTTAATTGTCTCATGAC 59 NA Drosophila melanogaster 50 CG9294 FBgn0034666 FBtr0071720 1 1 1 60 2R 17748589 17748607 GGCAAACTTTCCCATTGAG 59 17748628 17748649 CAAGGTATTAATCAAGCCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9313 FBgn0034566 FBtr0071521 3 1 1 103 2R 16869937 16869956 GTTTCAGTACGACAAGACCA 59 16870022 16870102 TCATGAAGTCATGCGATCC 59 NA Drosophila melanogaster 50 Gr57a FBgn0041240 FBtr0086241 2 1 1 60 2R 16573287 16573305 CTTAGCCGCAAAGTTATCG 58 16573190 16573211 TGAGTATGAGCAGGTAATTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13437 FBgn0034541 FBtr0086235 1 1 1 89 2R 16549768 16549843 TACGTGATCAATGCACCTC 59 16549896 16549914 GATCTTGTGGTTGTTGTGG 58 NA Nonspecific Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494 2 7 7 152 2R 15418202 15419689 CTATTGAGGGTAAAGGCAC 57 15418068 15418087 CTCAATTGTAGATGTCCACC 57 NA Drosophila melanogaster 50 sm FBgn0003435 FBtr0086494 3 1 7 75 2R 15425713 15433531 TTATGCTTGAGAGCCAACC 59 15425656 15425674 GTGTGATATTCGGGAGCTC 59 NA DesignRelaxed Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457 2 11 15 108 2R 15365201 15366256 TTCACTCTGGTCAAACCAG 59 15366328 15366346 TTGGAGAAGAAGCTCATGC 59 NA Drosophila melanogaster 50 CG7744 FBgn0034447 FBtr0086535 1 1 1 80 2R 15341639 15341657 TGTTATGGAGTGGGTATGC 59 15341699 15341770 AACTTCCCACCAGTATAAAGG 59 NA Drosophila melanogaster 50 CG5493 FBgn0034364 FBtr0086713 3 1 1 131 2R 14504809 14504827 ATCCCAATAGATCTGCCAG 58 14504619 14504717 CCAGATTGTCATTTATGTAGGC 59 NA Drosophila melanogaster 50 GstE8 FBgn0063492 FBtr0086676 2 1 1 60 2R 14295953 14295971 TATTACGAGGAGGCATGTG 58 14295994 14296013 TGAATTTCTTGAGGAGGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GstE2 FBgn0063498 FBtr0086670 3 1 1 60 2R 14287240 14287259 CTATTGTCTGCTACCTGGTG 59 14287281 14287300 AGATCCCTGGGATATAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sbb FBgn0010575 FBtr0086767,FBtr0086766,FBtr0086765 3 3 3 180 2R 14175232 14175640 CAAATACGAAACAACTAGCTGG 59 14175073 14175091 GACTTCTCAATATCCGCGT 59 NA Drosophila melanogaster 50 CG10914 FBgn0034307 FBtr0086745 1 1 1 60 2R 14047227 14047246 CAAGGAAACACTTTGACTGG 59 14047269 14047287 ATGATGGGAAGATGCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33981 FBgn0053981 FBtr0100025,FBtr0100026 1 2 2 120 2R 13663153 13663233 ATCTGGTTCAGATGTCCTG 58 13663051 13663069 GAATAGTCCATGACGAGGT 58 NA Nonspecific, InUTR Drosophila melanogaster 50 icln FBgn0029079 FBtr0086832 1 1 1 60 2R 13479117 13479135 ACAGTGATTCGGAAGACAG 59 13479159 13479177 ATAGCCTCATCCTCTAAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mthl4 FBgn0034219 FBtr0086956,FBtr0086957 1 2 2 107 2R 13333420 13333495 TTGTTGGATCTACACTGGC 59 13333331 13333349 ATGTAAATCGCCGAAAGGA 59 NA Drosophila melanogaster 50 mbl FBgn0053197 FBtr0086993 2 1 4 183 2R 13163394 13163412 CAATATGAACAGCCTGCTC 58 13163557 13183348 TGTACATACCTTGATGCTGTC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15611 FBgn0034194 FBtr0086982,FBtr0086981 1 2 2 80 2R 13000840 13000860 CTATGTGAGCTTCACTATGGG 59 13000900 13000983 GTTTGATATGTCTGCAACCAC 59 NA Drosophila melanogaster 50 Nach FBgn0024319 FBtr0089587,FBtr0089588,FBtr0087116 1 3 3 80 2R 12541203 12541223 CACATTGATTACGACGTACAG 59 12541077 12541164 TAAGCCCGAATAGAACTTATCG 59 NA Drosophila melanogaster 50 Hmgs FBgn0010611 FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146 2 5 5 60 2R 12227690 12227709 CAGAAGGATACTTCCAAGCA 59 12227731 12227750 TGTGGAATAGGATAGCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mrj FBgn0034091 FBtr0087193,FBtr0087196,FBtr0087194,FBtr0113084,FBtr0087195 3 5 5 163 2R 12092250 12092338 TATTCCGAGATGCCAATGG 59 12092105 12092126 GTCCATCATTGAGTAGTTAAGC 58 NA Drosophila melanogaster 50 Asph FBgn0034075 FBtr0087220 3 1 4 164 2R 12002360 12002867 ATGATTAGGGAGAACTATGCC 59 12002993 12003011 TTTGTAAGCATCGATGGCT 59 NA Drosophila melanogaster 50 CG12854 FBgn0033965 FBtr0087467 2 1 1 60 2R 10657482 10657500 ATGAAGAGGATTCCCACTG 58 10657440 10657460 ATCTTATCTGTAGCCTTGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 phyl FBgn0013725 FBtr0087516 1 1 1 60 2R 10319514 10319532 GAATACCTGAAACGCACCT 59 10319472 10319492 AGATATTGATCGTCTGGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34184 FBgn0085213 FBtr0112377 1 1 1 100 2R 10253605 10253626 GTGGATGATAATAGTTCAACCC 58 10253687 10253758 GGGTATCCTGATCTTTCCA 58 NA Drosophila melanogaster 50 CG8468 FBgn0033913 FBtr0087534,FBtr0087533,FBtr0087532 1 3 3 71 2R 10116748 10116766 ATTCCTGATGCTCTTCCAG 59 10116918 10116936 GTCATCACATAGAGGCCAC 59 NA DesignNoJunction Drosophila melanogaster 50 cg FBgn0000289 FBtr0112795 1 1 7 82 2R 10067364 10067382 CTTCCAGAAGAACCACCTG 59 10067428 10067936 GTACAACAAGCTGTTGCTG 59 NA Drosophila melanogaster 50 CG6145 FBgn0033853 FBtr0087687,FBtr0087685,FBtr0087686 3 3 3 60 2R 9426355 9426491 GCTAGTGACCTTTAAAGATGG 58 9426315 9426334 GCAGACGATAAAGTCAATCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG13331 FBgn0033850 FBtr0087672 1 1 2 96 2R 9409561 9409579 CTTCATCCTCGACTACGAG 58 9409834 9409852 AATCTCGTAGGATTCCGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG12488 FBgn0033772 FBtr0087851 1 1 1 86 2R 8636959 8637039 AGCAGAAGATTGTCTACTCC 58 8637088 8637106 TCGAACGGATGTTAACCAG 59 NA Drosophila melanogaster 50 CG8860 FBgn0033691 FBtr0088011 2 1 1 171 2R 8067276 8067294 ACAAGGTTGTCAAATTCGC 59 8067123 8067141 ATGTGAATCAGCTTGACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Oda FBgn0014184 FBtr0088015,FBtr0088013,FBtr0088014 3 3 3 285 2R 8055514 8055533 CAGAACAGATCACGATAGGG 59 8055182 8055203 CAGAATCGTATTCCAATTGGTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Oda FBgn0014184 FBtr0088015,FBtr0088013,FBtr0088014 1 3 3 283 2R 8055513 8055531 GAACAGATCACGATAGGGC 59 8055182 8055203 CAGAATCGTATTCCAATTGGTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Ef1alpha48D FBgn0000556 FBtr0088036,FBtr0088035 3 2 2 64 2R 7781102 7781120 TTAACATTGTCGTGATCGG 57 7781148 7781166 GTAGATCAAGTGTCCGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ERp60 FBgn0033663 FBtr0088059,FBtr0088058 3 2 2 84 2R 7776136 7776155 ACAAGTTCGAGTCATCTTCC 59 7776007 7776089 AGACCATGGAAGTTCTCCT 59 NA Drosophila melanogaster 50 CG9027 FBgn0033631 FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897 1 4 4 188 2R 7269617 7269636 GATAATACCCAGGTCAAGGG 59 7269385 7269466 ACCGTGATCAACCTTATCG 59 NA Drosophila melanogaster 50 CG13203 FBgn0033628 FBtr0088130,FBtr0100284 2 2 2 69 2R 7263259 7263277 ATGTGATTACCCTGGTGTC 58 7263310 7263328 ACTGAACTGTTATCCTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lambdaTry FBgn0043470 FBtr0088121 2 1 1 60 2R 7224521 7224542 ATGAGGTATAGAGGAAATCACC 58 7224562 7224581 TGATGATCTGGTTTGATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sha FBgn0003382 FBtr0088120 1 1 1 129 2R 7220173 7220298 CTCATCTACTAGCGGAACC 58 7220390 7220409 TCCTCCGGAATTATGTTCAG 59 NA Drosophila melanogaster 50 Vhl FBgn0041174 FBtr0088115 1 1 1 63 2R 7167595 7167613 GTTCCGGGATTACTACACG 59 7167640 7167658 AATCGGCTGAAAGATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30020 FBgn0050020 FBtr0088235 1 1 1 82 2R 6775890 6775982 TGACTCACAGCAATCTTCC 59 6776026 6776046 GTAATGCTGTATTAGATCGGC 58 NA Drosophila melanogaster 50 CG16728 FBgn0033539 FBtr0088258 3 1 1 81 2R 6529715 6529795 TTTATGCCAATTTGCCACC 59 6529652 6529670 TGGATGAGAATGTTCTGGC 59 NA Nonspecific Drosophila melanogaster 50 lola FBgn0005630 FBtr0089355 1 1 26 80 2R 6389907 6389925 TCCGTAATTGGCTAATGCT 59 6389547 6389865 TGGACTGAGTTAGTTTGTCTG 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0089365 2 1 26 187 2R 6419760 6419778 TTGAGGATTTGACACTGGA 58 6375918 6419548 ATCCACGGTAATCACTTGG 59 NA Drosophila melanogaster 50 CG33477 FBgn0053477 FBtr0088320 2 1 1 60 2R 6296771 6296790 TAATGTCCATGATACCAAGC 57 6296730 6296749 TTTACACGCATTGATAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CAP FBgn0033504 FBtr0088342,FBtr0088343 2 2 10 135 2R 6180369 6180855 AGATCAGAACATTCGAACG 57 6181135 6181154 CTCATATACTCGTGCTTGAC 57 NA Drosophila melanogaster 50 Pfk FBgn0003071 FBtr0088420 2 1 3 186 2R 5997663 5997740 GTCCTCGAGATATTTCAGGA 58 5997888 5997907 TTAAGAAATCCGTTGTGCAG 58 NA Drosophila melanogaster 50 CG2249 FBgn0040773 FBtr0088396 3 1 2 93 2R 5938170 5938189 TTTACCTAATTGCGGGAGTC 59 5938245 5938319 TCATCCTTGGGATCATTGG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG1648 FBgn0033446 FBtr0088493 2 1 2 110 2R 5707414 5707433 CAAACAAACTTACAAACCCG 58 5700148 5700166 TCACCGAAGTTCTTCAAGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12929 FBgn0033429 FBtr0113060,FBtr0088541 3 2 2 75 2R 5473936 5473954 TATTGGATACCCTTCGGTC 58 5473879 5473897 CTGTAATACTGGCCCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 prel FBgn0033413 FBtr0088507 3 1 1 289 2R 5312149 5312167 ATTACAGCTGGATGAACGT 58 5312419 5312769 GACAATTTCATCGATTGCCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG8235 FBgn0033351 FBtr0088676 3 1 1 118 2R 4814974 4814992 ATCTGGAGAAGATCGACTG 58 4814874 4814893 CTTCAGGTTACACATGACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8248 FBgn0033347 FBtr0088678 2 1 1 62 2R 4807160 4807178 CGTCGTTTGATAAAGTCCC 58 4807116 4807134 TGTGTTACTCTTCTTGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8584 FBgn0033322 FBtr0088724 3 1 1 61 2R 4588445 4588463 TAATCATCGACAACTCGCC 59 4588402 4588422 CTTAATGGGAATAGCGTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2291 FBgn0033279 FBtr0088802 3 1 1 60 2R 4148559 4148577 GAAGAAGATCGACGAAGTC 57 4148517 4148536 ATGATGGTACTCTGGATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 U2A FBgn0033210 FBtr0088941 3 1 1 60 2R 3563684 3563703 TGCAATACATAAACCCATGC 58 3563643 3563661 TGTGGAATCTTATAGCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12107 FBgn0033209 FBtr0088924 2 1 1 111 2R 3562263 3562281 TATTCGGCATCTTTCTGGG 59 3562425 3562444 TTTATGGCGTACAGGTAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 scra FBgn0004243 FBtr0088911,FBtr0088912 1 2 3 160 2R 3481548 3481566 CTCGAACAACATTAACGGC 59 3481690 3481771 CTAGCGTGATCCTGAAGTC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111087,FBtr0111059,FBtr0111074 3 3 60 94 2R 3244596 3249235 TTGGTCATCACAGAACCTG 59 3244520 3244539 CTTAAGGCTTGACCCATAGG 59 NA Drosophila melanogaster 50 CG15236 FBgn0033108 FBtr0086160,FBtr0086161 2 2 2 229 2R 2722213 2722231 CCATCTAGTAACAGCTCGG 59 2722424 2723008 ATCTGTCCAAGATCTGTGG 58 NA DesignRelaxed Drosophila melanogaster 50 Eb1 FBgn0027066 FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130 2 5 5 84 2R 2642342 2642416 CAAATCAGGTGATGGATATGC 59 2642460 2642480 TCAATATCCCGCAACTTAGAG 59 NA Drosophila melanogaster 50 Opbp FBgn0050443 FBtr0086109 1 1 1 81 2R 2542550 2542568 ATAAACGCTGTGGTAAACG 58 2542613 2542692 AGTTATCCACGTCAAACAC 57 NA Drosophila melanogaster 50 bin3 FBgn0033073 FBtr0085993,FBtr0085992 3 2 2 81 2R 2126344 2126362 GTAGGATTCAGTCACAGCT 58 2126406 2126497 TTGCATACAACTGTATGGGT 59 NA Drosophila melanogaster 50 CG14471 FBgn0033049 FBtr0085970 2 1 1 60 2R 1888232 1888250 GCTATAGTCGCAACTCTGG 59 1888273 1888292 GGTTTAGTCTCCTCCTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11163 FBgn0025693 FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053 1 4 4 80 2R 1662571 1662644 GCATCTCGTTACAGACTCC 59 1662509 1662529 TTATATCTTGGGCTGGATACG 59 NA Drosophila melanogaster 50 CG17528 FBgn0032999 FBtr0111275,FBtr0111277,FBtr0111274,FBtr0111276 1 4 4 82 2R 705345 705363 TTCTATATGCTGTCTGCGG 59 705227 705299 AACGTCAATCTTTAGCCCA 59 NA Drosophila melanogaster 50 CG17493 FBgn0040010 FBtr0111255 2 1 1 60 2L 22443432 22443452 GATCTATTTGACAACGAAGGC 59 22443473 22443492 TAATGGCCACCTTAAGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5929 FBgn0032982 FBtr0085963 1 1 1 80 2L 22198418 22198437 CAACTCTTGTGAATTCCACC 59 22196740 22198375 TGTAGTTCATTGCATGCTG 58 NA Drosophila melanogaster 50 CG1832 FBgn0032979 FBtr0085964,FBtr0100407 2 2 2 130 2L 22168219 22168237 ATACAATTACGCCCTGGTC 59 22168054 22168125 TGGATATGGTGTTAGCTGC 59 NA Drosophila melanogaster 50 CG1421 FBgn0032966 FBtr0085928 1 1 1 60 2L 21903549 21903569 ACTACAGGAATGGCTATTGTC 59 21903591 21903609 GTTGATCGGAAATGATCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2225 FBgn0032957 FBtr0085918,FBtr0085915 3 2 5 124 2L 21670624 21670643 CTCTACTGAACTTACACCCG 59 21670466 21670537 CTATTAACGATCGCACCGT 59 NA Drosophila melanogaster 50 His1:CG33840 FBgn0053840 FBtr0091844 1 1 1 69 2L 21496919 21496937 AATTTAAAGGAACGTGGCG 59 21496969 21496988 CGCATTTATAAGTGGCAGTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8671 FBgn0032938 FBtr0114602 1 1 3 151 2L 21278287 21278305 TCAGTGTCCTTTATGTCGC 59 21278419 21281140 CTGGGATTCCTCATTAGCTC 59 NA Drosophila melanogaster 50 CG8678 FBgn0032935 FBtr0081487 2 1 1 166 2L 21213357 21213375 AGACTAAGCCTTCGAATCC 58 21213153 21213227 AAACTTGGCAGAATCAGAC 57 NA DesignRelaxed Drosophila melanogaster 50 CG9248 FBgn0032923 FBtr0081470,FBtr0081471 2 2 2 60 2L 21160375 21160394 GTACATGGTTACAGATCGAG 57 21160417 21160435 GAAGTAGTCTCCACTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RPA2 FBgn0032906 FBtr0081438 3 1 1 150 2L 20925841 20925923 AAAGGGAGAAGGAATAGTGC 59 20925710 20925728 GGTGTAGGTGATCTTCGTC 59 NA Drosophila melanogaster 50 CG9317 FBgn0032879 FBtr0081394,FBtr0081395 1 2 2 92 2L 20729939 20729957 GATGACTATTGGTGTCGCA 59 20729654 20729883 TTCGTCGTTATCCAGTTCC 59 NA Drosophila melanogaster 50 CG13966 FBgn0032838 FBtr0081304 3 1 1 61 2L 19971147 19971165 GAAGATCATCGACACCCTG 59 19971104 19971122 TAGCTTCAATGGTCTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10026 FBgn0032785 FBtr0081237,FBtr0081236,FBtr0081238 3 3 3 89 2L 19457157 19457234 GCTCTACTAGTGACCTCCA 59 19457287 19457305 AAATATCTTGAATGCCGCG 58 NA Drosophila melanogaster 50 fon FBgn0032773 FBtr0081222 3 1 2 129 2L 19385700 19386087 GATTTCCAACAAAGTTTGGG 57 19385284 19385302 CAAAGCTACCGCTATAACC 57 NA Drosophila melanogaster 50 CG33120 FBgn0053120 FBtr0081118 3 1 1 90 2L 18844259 18844278 TGCTGATGTTATCATTCCTG 57 18843438 18843456 TTTGAGATGGTCAGGTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Mst36Fb FBgn0086682 FBtr0081075 3 1 1 81 2L 18672276 18672347 CAGTAGTTTGACTGATCCG 57 18672213 18672234 GTTAAGCATTAGTCTCTGATCC 58 NA Drosophila melanogaster 50 CG15142 FBgn0032645 FBtr0080995 1 1 1 64 2L 17498486 17498504 GAGTACAAGGAGGTGATGG 59 17498440 17498458 ATTATTTGCAACTGGGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976 3 4 6 108 2L 17394483 17400406 GCTTATACAGATAACAGCAGC 58 17400476 17400494 CAATGAAGGCAATCTGTCC 58 NA Drosophila melanogaster 50 CG15140 FBgn0032631 FBtr0112773 3 1 1 61 2L 17286438 17286456 TTTATGTGCTCCTGGTCAG 59 17286478 17286499 GTTTATTTGATCCTGAACAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17331 FBgn0032596 FBtr0080936 1 1 1 98 2L 16731682 16731700 ATCTGGCCGAATATCTTCG 59 16731537 16731555 AGTCAATGAAGGTGAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 VhaSFD FBgn0027779 FBtr0080941,FBtr0080940,FBtr0080942 2 3 3 122 2L 16724785 16724867 AACTTCCAGGTGCAATACC 59 16724681 16724700 ACAATCGCTGAGGATATCAG 59 NA Drosophila melanogaster 50 grp FBgn0011598 FBtr0080886,FBtr0080884,FBtr0080885 1 3 4 80 2L 16692116 16696595 ATCGAATAGAACCAGACGTG 59 16696638 16696656 GGTAATTGAGTCCGGACAG 59 NA Drosophila melanogaster 50 CG31826 FBgn0051826 FBtr0080762 3 1 1 250 2L 15772679 15772698 ATACTTTAGTCAGTGAGCGT 58 15772389 15772466 TTAGGTCCTCGCATTTCTC 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG15266 FBgn0028860 FBtr0080708 1 1 1 60 2L 15256800 15256818 GGTGCTGAAAGAGGATCTC 59 15256842 15256860 GATCTCCTCGTTGTACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15283 FBgn0028844 FBtr0080632 2 1 1 66 2L 14447986 14448600 AAAGAAACTACAGAGGGCG 59 14447938 14447956 CTGGCAATGTCAAAGTGTC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG33115 FBgn0028542 FBtr0080617 1 1 1 87 2L 13968826 13968905 TTGCTATATGACCTGCGAG 59 13968757 13968777 CGTCGTATTCTTATCGTATCG 58 NA Drosophila melanogaster 50 CAH1 FBgn0027844 FBtr0080539 3 1 1 186 2L 13803944 13803962 GGATACACCGAAGAGAACG 59 13808958 13809043 AGCAATAGCCAGGATTGAC 59 NA Drosophila melanogaster 50 CG16890 FBgn0028932 FBtr0080575,FBtr0080574 2 2 2 60 2L 13783334 13783353 CTTAACCTACCGAATGAGAC 57 13783293 13783311 CTCGGATTACATCGATGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kuz FBgn0015954 FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660 3 5 5 88 2L 13551656 13558807 CATCGTAAATGGTTACGCA 58 13609817 13609835 TGAGTGTTTCATAGTGGGA 57 NA Drosophila melanogaster 50 CG16813 FBgn0032490 FBtr0080446 1 1 1 80 2L 13228225 13228245 CTCATCGAACAACAATACCTG 59 13228287 13228305 ATAGTAGAGACTCAGGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020 2 17 17 87 2L 12723992 12724013 CAAGACCTATCAGATCAGACAG 59 12724061 12724214 TTTGAGCACCTTAATGCCA 59 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090023,FBtr0090026,FBtr0090022,FBtr0090029,FBtr0090025,FBtr0090014,FBtr0090024 3 8 17 186 2L 12724032 12724051 CGTGTTAAGTTGATGAACGA 58 12724335 12724774 CTAATGAAACCAGGAACGG 58 NA Drosophila melanogaster 50 bun FBgn0010460 FBtr0111004,FBtr0080377 1 2 6 178 2L 12477157 12536283 GACTGAAAGTGCATCTGGA 59 12458106 12458124 TGAGAATGCTGTTCTCGAG 59 NA Drosophila melanogaster 50 bun FBgn0010460 FBtr0080378 2 1 6 170 2L 12482648 12482666 CCACAGTCGTCAATATGGA 59 12458211 12477120 ACTTGACCAGATCCATTGC 59 NA Drosophila melanogaster 50 Aats-thr FBgn0027081 FBtr0080333,FBtr0080332,FBtr0080331 3 3 3 73 2L 12105094 12105112 CTACGACATGCATCTGGAG 59 12105203 12105221 TTTGCTTAACCAGACCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14930 FBgn0032366 FBtr0080245 3 1 1 95 2L 11521185 11521203 TCTGGAGTTCGTAGATGGT 59 11521046 11521127 CTTGCCAAAGTATAAGCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32830 FBgn0052830 FBtr0080205 3 1 1 63 2L 11255929 11255947 CTTGACCATGAAGAGAACG 58 11255974 11255992 CTTCATGAGTAGCGTTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33305 FBgn0032351 FBtr0080221 2 1 1 60 2L 11159922 11159940 ATCGCGATGAATACAGTCC 59 11159880 11159898 ATGGCATTAAGCATTCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nup154 FBgn0021761 FBtr0089881,FBtr0089882 3 2 2 91 2L 11006082 11006168 TAGTCTGATCACGACTGTG 58 11006223 11006241 CAAGATGTAGTTTGTCGGC 58 NA Drosophila melanogaster 50 CG18561 FBgn0032301 FBtr0080190 2 1 1 74 2L 10792422 10792440 GACATGGCTCCATAAACAC 58 10792366 10792384 CTTTCGTCTGCTTAAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17127 FBgn0032299 FBtr0080136 3 1 1 60 2L 10771193 10771212 TCAATCTCTTCGAGATCCTC 58 10771234 10771253 GACTGCAGGTTGTTTATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6415 FBgn0032287 FBtr0080108 1 1 1 60 2L 10704205 10704223 TCAATCTCTAGTAGCCGTC 57 10704244 10704265 GGTAAGTAGTTTCGATAGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7456 FBgn0032258 FBtr0080038 3 1 1 81 2L 10487109 10487127 CATGAAGAACTCCGATCTG 57 10486986 10487067 CTCCTCCATGAAATATCTTTCC 58 NA Drosophila melanogaster 50 KdelR FBgn0022268 FBtr0080023,FBtr0080021,FBtr0080022 1 3 3 60 2L 10427496 10427515 TCAATCATGAGTTTACCGTG 57 10427536 10427556 ACCGATTCCAAATAGATCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34367 FBgn0085396 FBtr0112592 1 1 1 134 2L 10348760 10348778 CACATAATCACAATCCGGC 58 10348181 10348662 TTATAGCAGCTGCGTACTG 59 NA Drosophila melanogaster 50 SamDC FBgn0019932 FBtr0079994 3 1 2 133 2L 10340804 10340880 CTACTGTGAAATCTGGTATCGA 59 10341019 10341040 CTCCGGAGTAATATGAATTGTC 58 NA Drosophila melanogaster 50 CG4953 FBgn0032204 FBtr0079984 1 1 1 87 2L 10267722 10267802 CTCTATTGCATCAAGCCCA 59 10267853 10267871 AGACGATGTCCAGTTTACC 58 NA Drosophila melanogaster 50 CG18619 FBgn0032202 FBtr0089735,FBtr0089736 1 2 4 89 2L 10264812 10264830 GGTATCAGTACCTGGAGGA 59 10264883 10264958 CCATTGAATTAACGACGCG 59 NA Drosophila melanogaster 50 Pros35 FBgn0003151 FBtr0079948 3 1 1 91 2L 10222061 10222080 AAGATGAAATCATCCGTCAC 57 10222134 10222210 AGTGATGTCATACTGACCG 58 NA Drosophila melanogaster 50 Gdi FBgn0004868 FBtr0079862 1 1 1 291 2L 9492856 9492874 TAAGCTCTACTCCGATTCG 58 9492501 9492519 GTCCAGAATGCAAATGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079622 3 1 4 161 2L 8245101 8245119 ATTCCGGTGATGATCTTCC 59 8244490 8244976 GGAGAGGTTTACCTTCTCC 58 NA Drosophila melanogaster 50 CG7356 FBgn0031975 FBtr0079534,FBtr0079533 2 2 2 149 2L 8026472 8026554 CTCAAGTTCAAGATCGCTG 58 8026666 8026685 AATCTCGTAGTGCCTATAGC 58 NA Drosophila melanogaster 50 Rapgap1 FBgn0085403 FBtr0112604,FBtr0112605,FBtr0112603,FBtr0112606 2 4 4 94 2L 7499877 7499898 CGGATAAATTCAGTGTGAACAC 59 7499746 7499824 ACTGCAGGTATTTAGATTGGG 59 NA Drosophila melanogaster 50 CG32829 FBgn0052829 FBtr0079370 1 1 1 64 2L 6915983 6916001 GGACGAGTACATCAAGGAG 59 6915937 6915955 ACTTCTTATGATGTCCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 osm-6 FBgn0031829 FBtr0079333 2 1 1 124 2L 6556352 6556426 TCAATGATGTGGAGCTGAG 59 6556246 6556264 AAACATCTGCTTGAAGTCC 57 NA DesignRelaxed Drosophila melanogaster 50 CG13991 FBgn0031785 FBtr0079202 3 1 1 60 2L 6140214 6140232 ATGTCCCAAGAACTACGAG 58 6140256 6140274 AAGAAAGAACTTCTGCCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34179 FBgn0085208 FBtr0112372 1 1 1 60 2L 6048627 6048647 CGAAATGTCGTACTTACTCAC 58 6048587 6048605 GTCGTAGAACTTGTAGCCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 slmo FBgn0029161 FBtr0079218,FBtr0079217,FBtr0112945 3 3 3 73 2L 6047423 6047441 AACAGATGGTGCTGAAGAC 59 6047368 6047386 CTCATAGTAGAGCACCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slmo FBgn0029161 FBtr0079218,FBtr0079217,FBtr0112945 1 3 3 71 2L 6047423 6047441 AACAGATGGTGCTGAAGAC 59 6047370 6047388 CATAGTAGAGCACCTCGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12511 FBgn0031729 FBtr0079113 3 1 1 61 2L 5678958 5678976 GCTCAAGACATTCTCACAG 58 5679001 5679019 TTTCTCTGACCTCTAGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nompC FBgn0016920 FBtr0079074,FBtr0079075 3 2 3 112 2L 5358663 5358681 ATGACACCACTACACTTGG 59 5358757 5358836 GGATTATAGCCGTTCTCGA 58 NA Drosophila melanogaster 50 CG33995 FBgn0053995 FBtr0100048,FBtr0100050,FBtr0100049 1 3 3 80 2L 5045911 5046150 TTATCGGCGCTAGAAATCC 59 5046193 5046212 CATGTACTCGTTGTAGTCCT 58 NA Nonspecific Drosophila melanogaster 50 CG3792 FBgn0031662 FBtr0078997 3 1 1 60 2L 4978269 4978289 GGTGACTTTATGATCATCCTC 57 4978311 4978329 CCAGAATAACCGAATTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3251 FBgn0031622 FBtr0077422 3 1 1 60 2L 4689519 4689538 AAGTGTTTATCGAGGAGCAG 59 4689478 4689498 AGTGGATGTAGATTATCGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33003 FBgn0053003 FBtr0077434 1 1 1 92 2L 4401671 4401689 GAAGACACGTATTTACCCG 57 4401917 4401935 TGATCATGATTGTGTCCCT 58 NA DesignNoJunction Drosophila melanogaster 50 for FBgn0000721 FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305 1 4 10 179 2L 3626210 3634250 ATGTCATGGAAGATGGACG 59 3626049 3626067 TGATGGTCTGAAAGCACTG 59 NA Drosophila melanogaster 50 CG2991 FBgn0031474 FBtr0077627,FBtr0077625,FBtr0077626 1 3 3 121 2L 2866633 2866651 CCTCACAATTGCATCAGTC 58 2866736 2866826 GTTAACTGGAACCTTGGTC 57 NA Drosophila melanogaster 50 CG18557 FBgn0031470 FBtr0077689 1 1 1 60 2L 2845570 2845588 AATGCTATTTCTTGGCCGA 59 2845528 2845546 TTTGAGAACTGTGACAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rad1 FBgn0026778 FBtr0077747 2 1 1 60 2L 2573555 2573573 CCTCCTAGAACTGCATCTG 59 2573513 2573534 GAACTGAATGAATATCTCCTCC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14346 FBgn0031337 FBtr0077926,FBtr0077927 2 2 2 173 2L 1368285 1368303 AAACCCTGAGCACTTACAC 59 1368578 1368596 GTTGGACGCAAATGAACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5397 FBgn0031327 FBtr0077920 3 1 1 60 2L 1241658 1241676 CAATTGTCTCGGAAACAGC 59 1241700 1241718 CCGATCTCATCACCATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5001 FBgn0031322 FBtr0077972 3 1 1 87 2L 1192132 1192150 AACCCGATTTCTTCTCCTC 58 1192257 1192276 GAGTGTGATCTGAAAGAGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4896 FBgn0031319 FBtr0077968,FBtr0114467,FBtr0077970 2 3 3 81 2L 1181781 1181861 ATGAGGGTCTATCCTATCGT 58 1181905 1181923 CTCCTATTTGGTGGAGGAG 58 NA Drosophila melanogaster 50 RpI135 FBgn0003278 FBtr0078054 3 1 1 76 2L 405981 406000 TCATTTGACTCTAACTTGCG 58 406096 406116 CTATAAGATGCTTGGGAATGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33992 FBgn0045202 FBtr0100045 3 1 1 60 2L 328014 328035 GAGAAAGGCATGAATAAGAAGG 59 327975 327996 TATCCTCATCCTTATCTTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL10 FBgn0031231 FBtr0078124 2 1 1 60 2L 204005 204023 CTAAGAGCAGTACTCCTGC 59 204045 204065 CGCTGTATATTGATCTTACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32657 FBgn0052657 FBtr0073625 3 1 1 100 X 11981403 11981422 CTTAAATACTCGCCATTGCT 58 11981543 11981561 TAGTGTAGTCCAGTCATGG 57 NA DesignNoJunction Drosophila melanogaster 50 tty FBgn0015558 FBtr0077224 3 1 2 163 X 21203386 21204059 AAACTACTCCAAGACCCTG 58 21203241 21203259 CTCCTCCATTCTGTAGACC 58 NA Nonspecific Drosophila melanogaster 50 CG14213 FBgn0031047 FBtr0074744,FBtr0074743 1 2 2 115 X 19533766 19533784 GTACCCTTTCTTGTCGACC 59 19533938 19533956 GAAAGGTGATCACCTCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32533 FBgn0052533 FBtr0074786 3 1 1 64 X 19368797 19370159 TTACGACAAGCTGGATGAC 59 19368751 19368770 TCCTATCGTCACTTGAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 Fim FBgn0024238 FBtr0074443,FBtr0074441,FBtr0074442 1 3 3 87 X 17182017 17182035 AACAACCATCCAGGATTGG 59 17181556 17181966 AATTGCGGTAGGTCTTCTC 59 NA Drosophila melanogaster 50 CG4768 FBgn0030790 FBtr0074332 1 1 1 178 X 16688407 16688499 CAAAGAATCATGTGATGGTCTC 59 16688638 16688656 GTGGATTTGAGTTGCATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9903 FBgn0030756 FBtr0074297 2 1 1 249 X 16433701 16433791 TGGCAGATTCTTGTAGCTG 59 16433470 16433488 CATAGAACAGGACGACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nipsnap FBgn0030724 FBtr0074258,FBtr0074257,FBtr0074259 1 3 3 277 X 15965372 15965390 TCTTAGCTTGATGCAGGAG 59 15964887 15965071 GCAGAGATTTGTAACACCA 57 NA DesignRelaxed Drosophila melanogaster 50 CG8239 FBgn0030683 FBtr0074087 2 1 1 163 X 15643975 15644055 GAATGAAGTTCATCGATTGGC 59 15644180 15644198 TATCGTAGAGTCGGGACAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14407 FBgn0030584 FBtr0073989 2 1 1 127 X 14732200 14732218 TTAGCTGACACTTGAACAG 57 14732091 14732109 AATCTGGTATCTCGGATGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11151 FBgn0030519 FBtr0073819 2 1 1 202 X 13633779 13633797 CTTGCTATACGACCATCCC 59 13634051 13634069 GTTCTCCTTCAGTCCATCG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG32635 FBgn0052635 FBtr0073780 2 1 1 82 X 13377307 13389879 CAAGCAGTTTACGCTTCTG 59 13389924 13389943 TTCGACAGCATTATCAACGA 59 NA Drosophila melanogaster 50 CG12725 FBgn0030483 FBtr0073788 2 1 1 60 X 13296387 13296406 ACGCATAGATCTGGAAAGTG 59 13296346 13296364 ATCGAGTTCAGTCAAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073483,FBtr0073492,FBtr0073491 3 3 12 180 X 11276005 11281814 ATAGCTGATAATCAGCGCA 58 11281957 11282028 GTATCTGTGAAGTCTGGGAC 59 NA Drosophila melanogaster 50 CG2909 FBgn0030189 FBtr0071441 3 1 1 92 X 10220980 10220998 TACACGAACGTACATTGGG 59 10221115 10221134 ATAAATTCCGGTAGATGGGC 59 NA DesignNoJunction Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071474,FBtr0071478,FBtr0071477,FBtr0071475 1 7 7 94 X 10172050 10172137 CCGAGGCCTTTAGATTCAG 59 10171974 10171993 GTAGCTCTCGAAAGTCTCTG 59 NA Drosophila melanogaster 50 CG32691 FBgn0052691 FBtr0071435 2 1 1 78 X 10058624 10058643 CATTACTGAAAGTGCGACAG 59 10058684 10058702 GTACCAGGATCACAACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3106 FBgn0030148 FBtr0071403 1 1 1 132 X 9554223 9554329 CCTACAGCATTTGCATATCTC 58 9554111 9554129 ATCAGTACGATCACGATGG 58 NA Drosophila melanogaster 50 CG33692 FBgn0064121 FBtr0091675 2 1 3 165 X 6766947 6771957 AACCACATGTCACTAGCTG 59 6772086 6772104 CATTACCCGAATTCGAGGA 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG14435 FBgn0029911 FBtr0071042 1 1 1 80 X 6735769 6735867 CTTCAATGGTATCAAGTGTCC 58 6735709 6735729 GTTAGGCACATGACTAAATGG 59 NA Drosophila melanogaster 50 sqh FBgn0003514 FBtr0070877 1 1 1 101 X 6117686 6117704 TTCGACGAGGAGAATATGG 58 6117530 6117621 ATACATCTCGTCCACATCC 58 NA Nonspecific Drosophila melanogaster 50 CG32751 FBgn0052751 FBtr0070880 2 1 1 63 X 6091928 6091946 TTACGGACTTCGTGTATCC 58 6091651 6091901 ATTTGAACAGCTGTGAGGA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12680 FBgn0029740 FBtr0070726 2 1 1 60 X 4891582 4891639 CAGGGATTAGCTGTATCCT 57 4891663 4891681 TACTGTTCGCATTCTTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 norpA FBgn0004625 FBtr0100671,FBtr0070651,FBtr0100670,FBtr0070650 2 4 4 119 X 4243572 4243590 CAAGGTCGATGAATACGGA 59 4243738 4247510 ATCTTCGGATCCTTTGGTG 59 NA Drosophila melanogaster 50 CG14424 FBgn0025644 FBtr0070563 1 1 1 60 X 2820669 2820690 CTGCTTAAGTTCAAGAAGATCG 59 2820630 2820648 TCTCGTTGCTTGACTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 crm FBgn0000376 FBtr0070495,FBtr0070496 1 2 2 80 X 2629130 2629220 GGGATATACTGGATCCGTC 58 2629068 2629086 CGATTTCCTGGAACTTGTG 58 NA Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 1 13 13 80 X 2567070 2567088 ATGGAGGGTAATCACACCT 59 2567131 2567221 CTGTATTGAGAGCTCATGCT 59 NA Drosophila melanogaster 50 CG14781 FBgn0026871 FBtr0070258 1 1 1 67 X 1371537 1371555 GATCTCAAGAAGGAGTCCC 58 1371586 1371604 TTGGGCTTGATAGTGAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13361 FBgn0029532 FBtr0070149 2 1 1 60 X 646259 646355 AAATTCACGCTACAAGGGA 59 646217 646236 GTATTTGGTCTGATTGTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mod(r) FBgn0016038 FBtr0089724,FBtr0089723 3 2 4 103 X 516379 516485 TCAGCATATCAGGATTGCAG 59 516551 516569 ACGTGTTGAGGAAAGTCTG 59 NA Drosophila melanogaster 50 CG41536 FBgn0085675 FBtr0114123 3 1 1 62 U 8007484 8007547 TCCCTATGGATCGATAGGC 59 8007440 8007458 ACTTGATCTCGGTGTTCAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40268 FBgn0058268 FBtr0113853 3 1 1 178 U 374791 375406 ATTCGTTCTTCATGGTGTG 58 374631 374650 ATAAATCGAGCTTGCTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11360 FBgn0039920 FBtr0089091 3 1 1 60 4 705657 705676 AAATAGAAGCTCACATTGCC 58 705698 705717 GTAATAGCATCACCACTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS3A FBgn0017545 FBtr0089177,FBtr0089176 1 2 3 81 4 87357 87476 GACAAGTACAGGTCGATGG 59 87294 87313 AGAGGTACCCATCTACAGTC 59 NA Drosophila melanogaster 50 RNaseP:RNA FBgn0046696 FBtr0085775 3 1 1 66 3R 27043157 27043175 GCATTGAAACCTTTCGTGG 59 27043109 27043127 TTGAGTTCTGCCTTAGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11337 FBgn0039846 FBtr0113314 3 1 3 120 3R 27229895 27230064 TTCAGTTCTGGCAGAATACC 59 27229794 27229814 GATAATCTTTGTGGAAGAGCG 59 NA Drosophila melanogaster 50 Aph-4 FBgn0016123 FBtr0085734,FBtr0085733 2 2 2 215 3R 26877630 26877708 CATCTCGTATGCCAATGGT 59 26877887 26877905 ATCAAACTGGAACCAGGTC 59 NA DesignNoJunction Drosophila melanogaster 50 RpL32 FBgn0002626 FBtr0114556,FBtr0085592,FBtr0085593,FBtr0085594,FBtr0114555 3 5 5 60 3R 25871413 25871431 CGGATCGATATGCTAAGCT 59 25871309 25871327 ACTCTGTTGTCGATACCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ocn FBgn0041102 FBtr0085599 2 1 1 186 3R 25863082 25863157 GAGGAAATCTTTGAGGAAATCC 59 25862862 25862880 GGAATTTGGTCCAAGACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7920 FBgn0039737 FBtr0085604 1 1 2 212 3R 25840612 25840630 AACTACTTCACCTACGTGC 59 25840418 25840436 ACCGAAAGATTGCAAACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7911 FBgn0039735 FBtr0085606,FBtr0113308 2 2 2 65 3R 25829745 25829763 AGTGACCTTCAAACTGGTG 59 25829613 25829716 AAGTTCATCTCGACCTTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Ptp99A FBgn0004369 FBtr0100523,FBtr0085423,FBtr0085424,FBtr0085422,FBtr0110981 3 5 5 80 3R 25309106 25309196 CGTCATTGTGGATAGATATGG 58 25309238 25309256 CAGTACTCCATCTCGATGG 58 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 2 8 8 121 3R 24962130 24962213 ACCAATGATAAGCCCTACTC 58 24962294 24962315 CCCATGAACATATAGGTTTCAC 58 NA Drosophila melanogaster 50 CG1647 FBgn0039602 FBtr0085326 2 1 1 185 3R 24646210 24646228 CAGAAGATCTACGAGCTGG 59 24646431 24646518 ATCAATTAATCTTGCGGGC 58 NA Drosophila melanogaster 50 wdb FBgn0027492 FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206 2 7 7 129 3R 23392424 23392442 AAATTCTTAGGACTGCGGG 59 23392249 23392331 ATCCGTTGATGATACTGCC 59 NA Drosophila melanogaster 50 CG5815 FBgn0027574 FBtr0085106,FBtr0085107 2 2 2 131 3R 22939931 22940011 AAAGACGCATTTACGACGA 59 22940106 22940124 AACGACGCTTATCATACCC 59 NA DesignNoJunction Drosophila melanogaster 50 beat-VII FBgn0039447 FBtr0085050,FBtr0085051 1 2 2 60 3R 22489063 22489326 AATCGACTGGGACAATTCC 59 22489021 22489039 TAGATCGAACTGGACATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5471 FBgn0039440 FBtr0114538 2 1 1 212 3R 22455687 22455705 TTCTCCGTAGTTCTTTGCC 59 22455881 22455899 GGATTGAGATCCTTCCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 m6 FBgn0002632 FBtr0084959 2 1 1 97 3R 21858693 21858711 TCTTGTCGTAACCATGTCG 59 21858772 21858790 TATCGTATCGCTGACTGTC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG17195 FBgn0039369 FBtr0084921 1 1 1 60 3R 21602703 21602722 TATTGGTCACCTTCATAACG 57 21602662 21602680 CTAGTCATATAGCAGGCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11892 FBgn0039313 FBtr0089645,FBtr0089644 2 2 2 113 3R 21108435 21108454 GATTGCCTACTACTTTAGGC 57 21108529 21108615 GCGTAGAATTTCTTCTGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpb10 FBgn0039218 FBtr0084688 2 1 1 88 3R 20543422 20543523 AATACACCGAAGGAGATGC 59 20543575 20543593 TTCGATAAGATCCACGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13605 FBgn0039150 FBtr0084586 2 1 1 232 3R 19935988 19936086 AGAAAGCCATTGACTCTGAG 59 19935775 19935793 ATGGAAGAAGGTAGTGCTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG33337 FBgn0053337 FBtr0084485 3 1 1 81 3R 19416875 19416964 CTTCGCAAATGATATGTGCC 59 19416813 19416834 TAGCAGGATAGGAGATATGAGG 59 NA Drosophila melanogaster 50 Dph5 FBgn0024558 FBtr0084280 3 1 1 60 3R 18408736 18408754 ATCTGGAGATGTACACCTC 57 18408624 18408715 CCATAGAACTCTTGCATATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31169 FBgn0051169 FBtr0084217,FBtr0084218 2 2 2 80 3R 18208161 18208181 GAGATCATAAACACTCGTCAC 58 18208222 18208299 ATCATTTACAGCGATCAGGT 59 NA Drosophila melanogaster 50 CG5732 FBgn0038934 FBtr0084200 1 1 1 108 3R 18041087 18041105 GAAGTTCCTCGAGTCTCAG 59 18041239 18041257 ATAAAGCCCGTATCTTGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG31424 FBgn0051424 FBtr0084249 3 1 1 60 3R 17941568 17941586 TATTGAAAGCTACCAGCGA 58 17941526 17941545 AATTAAATCCTCTGAGGTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5412 FBgn0038806 FBtr0083909 2 1 1 251 3R 16403301 16403379 AAAGAAGTTGACCTCCATCC 59 16403593 16403611 ATGAATGTCTGCTTCTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4462 FBgn0038752 FBtr0083850 1 1 1 176 3R 15748415 15748433 GTACCGAACACTATTGCCA 59 15748027 15748102 ATCAGCATCCATTGAGTCC 59 NA Drosophila melanogaster 50 CG17806 FBgn0038548 FBtr0083527 2 1 1 60 3R 13628577 13628595 GATTCGGACACTGAGACTG 59 13628535 13628555 CATCCACCCTACTTTCTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17562 FBgn0038449 FBtr0083329 2 1 1 77 3R 12442644 12442722 GCTCATTAAGCGTTTAAAGC 58 12442762 12442780 GACCACAGTGCTAGTAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083209,FBtr0083210,FBtr0083205,FBtr0083204 2 8 8 81 3R 11780338 11780357 TTGGATCCTTCTTGTCATCG 59 11780398 11780482 GAGTCGAGAATGGTATTATCCT 58 NA Drosophila melanogaster 50 CG6118 FBgn0038339 FBtr0113240,FBtr0113239 1 2 2 91 3R 11249454 11249474 AGGTGAATGTCAAGTATGAGG 59 11249257 11249401 GTCCAGGTTCTTCTCTGTG 59 NA Drosophila melanogaster 50 CG6236 FBgn0038318 FBtr0083121,FBtr0083122 2 2 2 108 3R 11151728 11151746 GTATACGGGCATCATTCTC 57 11151561 11151656 ATTTACACGGTGAATCTCC 57 NA Drosophila melanogaster 50 CG17304 FBgn0038267 FBtr0083012 2 1 1 64 3R 10685076 10685094 AAATGATCATCGAGGTGCT 59 10685030 10685049 CATCATTCTAGTGGCATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7362 FBgn0038258 FBtr0083015 1 1 1 208 3R 10577776 10577794 CCTGCGATATTGTACTCGA 58 10575272 10577605 AGTACTGAAAGTGTATGCCT 58 NA DesignRelaxed Drosophila melanogaster 50 CG5724 FBgn0038082 FBtr0082657 1 1 1 60 3R 8566066 8566153 GATTGTACAAGGAATTGTTCGG 59 8566173 8566192 TTTACCAGTTCGGAGTACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12267 FBgn0038057 FBtr0082635 2 1 1 80 3R 8287255 8287330 AAGCCTATTGACTGAGGAC 58 8287373 8287392 TCCATATCCACCACATACAC 58 NA Drosophila melanogaster 50 CG10038 FBgn0038013 FBtr0082614 1 1 2 121 3R 8176029 8176110 ATGCATTCGATGGAGAAGG 59 8175926 8175944 CTTCTGGTAGTGCTTCTCG 59 NA Drosophila melanogaster 50 aur FBgn0000147 FBtr0082483 2 1 1 250 3R 7789481 7789561 AAACCAAGACTGAAACCCA 59 7789775 7789793 ATACAGACGCAGGATATGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6959 FBgn0037956 FBtr0082517 3 1 1 95 3R 7650662 7663895 CATTTGAGGCTTCAACAACC 59 7650586 7650604 CCGATCGCTAGGATAATGG 59 NA InUTR Drosophila melanogaster 50 CG6950 FBgn0037955 FBtr0082522,FBtr0082519,FBtr0082520 3 3 4 118 3R 7647072 7647092 CGAGGTGATCATTATTGAACC 58 7646915 7646933 CAGAGCTTATTGGTCCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18764 FBgn0042205 FBtr0082417 3 1 1 106 3R 7453681 7453699 ACCAACGAATCATTCACCA 59 7453769 7453860 ATTGGTGTGAGTCCTTTCG 59 NA Drosophila melanogaster 50 CG31386 FBgn0051386 FBtr0082359 2 1 1 136 3R 7103452 7103471 ATAAAGGTTAGAGGGAAGCA 58 7097286 7103354 CAACAATCGCATATTCATGG 57 NA InUTR Drosophila melanogaster 50 CG31388 FBgn0051388 FBtr0082356 3 1 1 124 3R 7064217 7064235 ATAATCGGGACACTTCCTC 58 7064322 7064688 ACAGACGAATTTGGTATCTG 57 NA Drosophila melanogaster 50 CG6629 FBgn0037860 FBtr0082380 3 1 1 60 3R 6941201 6941219 GCAATTAAGGCACTTGCTC 59 6941159 6941178 TTTAGTAGCCAGAAGACGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rrp46 FBgn0037815 FBtr0082248 2 1 1 162 3R 6239342 6239360 CTTGGAGTGTAACTACCGA 58 6239486 6239562 AATACTGCCACGATCTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Rlc1 FBgn0014023 FBtr0082120,FBtr0082121 3 2 2 169 3R 5341237 5341255 CGTATCAAGTCCAACAAGG 58 5341035 5341053 CTCACTACTGTCTCCAGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG9836 FBgn0037637 FBtr0081930 1 1 1 247 3R 4649167 4649185 TGACTACAAGGTCAAGCAG 59 4648747 4648768 CGATTCCTAAACTTCTATGCAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG8351 FBgn0037632 FBtr0081918 2 1 1 115 3R 4628710 4628801 GTTTCAACCTCTTCCAAGG 58 4628880 4628898 GATCATAATTGCGTCGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34301 FBgn0085330 FBtr0112497 1 1 1 118 3R 4599195 4599213 CATACCTAAGCTCCATGGC 59 4599295 4599382 ATTTGGTTTCTGGGCTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7994 FBgn0037599 FBtr0081875 2 1 1 106 3R 4418269 4419006 CAAACATGTTGCAACACTG 58 4419075 4419094 CTTTCTGCTTGTATTGGTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31453 FBgn0051453 FBtr0081898 2 1 1 67 3R 4386924 4386942 CATCTACGAGACAGGACTC 58 4386812 4386830 GTTCAGAGAACATCAGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG33722 FBgn0064126 FBtr0091720 2 1 2 60 3R 4072107 4072181 GAGAATAATGCTTTAGGGCAC 59 4072202 4072221 AGGTTGGTAGCATCTTTCTC 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG7800 FBgn0037552 FBtr0081795 2 1 1 60 3R 4044629 4044647 ATTCCCAAACTTCTAACGG 57 4044668 4044689 TGATATTCTCGGATAGATCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rtnl2 FBgn0015831 FBtr0081548 2 1 1 60 3R 3355237 3355258 ATCTTACGTTTCTATCCTCACC 59 3355198 3355217 CCAGATAAAGAGTCTCCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi8 FBgn0037415 FBtr0078598 3 1 1 185 3R 2081298 2081316 TTCAGTTCGTCAGTTCTGG 59 2081464 2081776 CCTCGTTATCGAATTTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rm62 FBgn0003261 FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653 1 6 6 154 3R 1829622 1829746 GAGGAGAAATTGAAGACCCT 59 1829487 1829505 TTGTCACCGTGAATAGCTC 59 NA Drosophila melanogaster 50 CG10979 FBgn0037379 FBtr0078631 2 1 1 80 3R 1620950 1620968 ATTTCATCAGCCACAAACG 59 1621009 1621112 TGGAATTCTGATCTGTGTATCC 59 NA Drosophila melanogaster 50 pncr008:3L FBgn0047000 FBtr0091957 3 1 1 63 3L 6213715 6213734 CAGTTCTTTGAGTTCTCGAC 58 6213757 6213840 CCAACTAGATACTTGATCACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41122 FBgn0069929 FBtr0111162 3 1 1 106 3L 24315595 24316744 GAACCGGATATCAAGAAGC 57 24316814 24316832 TATGGTTCTATGCTGGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7145 FBgn0037138 FBtr0078446,FBtr0078447,FBtr0078445 2 3 3 83 3L 21830927 21830945 TGAGACCATGAAACTGGTG 59 21830809 21830880 CACTTGACGAAATCCTCGT 59 NA Drosophila melanogaster 50 M6 FBgn0037092 FBtr0078355,FBtr0078356 1 2 2 96 3L 21504264 21504284 AGTAGGAATCTTCTGCTTCAC 59 21504342 21504418 AGCTTCGATCCATATCAGG 58 NA Drosophila melanogaster 50 CG34000 FBgn0054000 FBtr0100055 1 1 1 128 3L 20980777 20980795 CAATTCCCATTCGCTATCG 58 20978052 20978073 GGTCTTGTCATATTTAGTTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13813 FBgn0036956 FBtr0074827 3 1 1 61 3L 20225593 20225673 TGAGCCTAATTCTGATCAACC 59 20225693 20225714 CATAGCGAGACATTTGAAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7770 FBgn0036918 FBtr0074894 1 1 1 262 3L 19916967 19916985 ATTGAGTCGTACCAGAACC 58 19917298 19917400 TCCTTCTCCATGTTCTCCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG6839 FBgn0036831 FBtr0075069 1 1 1 60 3L 18911646 18911664 AATTACCTTCCAAACGGCT 59 18911688 18911706 TTGGGTGTACAGTTTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32201 FBgn0052201 FBtr0075105 2 1 1 202 3L 18603129 18603346 CATTGGAGAAGGAAATCAGAG 58 18603564 18603582 AATTTCCCATGGCTATGAG 57 NA DesignRelaxed Drosophila melanogaster 50 CG13727 FBgn0036711 FBtr0075243 3 1 1 60 3L 17334083 17334104 GCTAGTGACCTAAATGATAACC 58 17334044 17334063 TATTCCCACCTAGTTTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7707 FBgn0036703 FBtr0075212 3 1 1 81 3L 17237076 17237095 AACGTATTCAGTGCTGAGAG 59 17237138 17237219 TTCGAAATTGTCGCAATAGG 58 NA Drosophila melanogaster 50 CG9706 FBgn0036662 FBtr0075327,FBtr0075326 2 2 2 60 3L 16777552 16777571 GCTTATTACTACGTCCTGCT 59 16777593 16777612 TGGAGTACAGGAATACTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34244 FBgn0085273 FBtr0112438 1 1 1 116 3L 14228643 14228721 TTCCTTCTGGCTTACATCG 59 14228545 14228563 ATTATCCTCGGTCACATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100041 1 1 6 98 3L 14223199 14223286 AAGATTGTCTGGAACTGCT 58 14223348 14223366 CTGCATATTCGGTCTTGGT 59 NA Drosophila melanogaster 50 CG8100 FBgn0036410 FBtr0075779 1 1 1 60 3L 14076908 14076927 GAGGAACTCATTACAATGGG 57 14076950 14077067 TGCCTTCCTTATAGCTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nplp2 FBgn0040813 FBtr0075839 3 1 1 97 3L 13349867 13349886 CTGCCCAAGAATTTCTTACC 58 13349946 13350119 CTTGAAGAGACCCTCAACC 59 NA Drosophila melanogaster 50 CG34429 FBgn0085458 FBtr0112730 3 1 1 193 3L 13056703 13056721 GAGTCTGTGTCCTGAAGAG 59 13056930 13056948 ATACACCTGATCGCAATCG 59 NA DesignNoJunction Drosophila melanogaster 50 toe FBgn0036285 FBtr0075980 2 1 1 114 3L 12416885 12416903 GATAGTAGTGCCGGAAGTG 59 12416723 12416809 CGCCTTCGATATCTATCATCC 59 NA Drosophila melanogaster 50 CG14122 FBgn0036282 FBtr0075985 2 1 1 143 3L 12393887 12393965 CATCATTGCTTCAAGAGGC 59 12393762 12393780 AGAACCGATCATCAAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9760 FBgn0036259 FBtr0076021 2 1 1 137 3L 12151110 12151129 AACTCCATCGGGATATTGTG 59 12150942 12150960 ATTGTGCACATTTCCACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14135 FBgn0036193 FBtr0076111 2 1 1 270 3L 11685459 11685540 TATGCTCCTTAAAGCGTGAG 59 11686325 11686346 CTCGTTCTTTGATTCTTCAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18815 FBgn0042138 FBtr0076105,FBtr0076104,FBtr0076103 3 3 3 81 3L 11622535 11622553 GAATGTGACGTTCAAGACG 59 11622598 11622692 ACTGATGATGTCCTTGACG 59 NA Drosophila melanogaster 50 chrb FBgn0036165 FBtr0076093 2 1 1 64 3L 11487796 11487815 TCTTCATTGAGTTCGAGAGC 59 11487953 11487973 CGGATCCACTTTAAAGTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7560 FBgn0036157 FBtr0076173 1 1 1 80 3L 11418887 11418906 AGGGATACACTAGTTTAGGC 58 11418949 11419034 CTCCAGCATCAATCTTTGC 59 NA Drosophila melanogaster 50 CG6321 FBgn0036117 FBtr0076242 2 1 1 86 3L 11053818 11053900 AAGTCCCGTCAATTGTGAG 59 11053750 11053769 TCAAAGTCCAACATTGTGGA 59 NA Drosophila melanogaster 50 CG6404 FBgn0027615 FBtr0076271,FBtr0076272 2 2 2 138 3L 10877848 10877866 CTAAGAAGGGATTCGTCGG 59 10877654 10877672 AACTTGTACGTCTTGACCA 58 NA DesignNoJunction Drosophila melanogaster 50 ect FBgn0000451 FBtr0076305,FBtr0076306,FBtr0076307 2 3 3 290 3L 10189411 10189429 ACAGACGGTCAACAATGAG 59 10188794 10188921 TCCTCATCTTCATCATCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG18177 FBgn0036039 FBtr0089410,FBtr0114566,FBtr0089411 1 3 3 80 3L 9721525 9721616 GAAGAGAAGATTTACGCTTCAC 59 9721657 9721675 ACATAGGTGAATCCGTCCT 59 NA Drosophila melanogaster 50 Glu-RIB FBgn0028431 FBtr0076431 3 1 1 123 3L 9250544 9250562 CTTCAAATACGCGATGCTC 59 9250649 9251208 CTGATTGCAAATCAGTCGT 58 NA Drosophila melanogaster 50 CG6511 FBgn0035923 FBtr0076570 1 1 1 116 3L 8717225 8717301 GGGCTCAAGAGGAATACAG 59 8717381 8717399 GTTTCACATACAACGGCTC 59 NA Drosophila melanogaster 50 CG7112 FBgn0035879 FBtr0113153,FBtr0076605 1 2 2 80 3L 8343180 8343257 CTCCTTCATATGCCTGAGG 59 8343301 8343319 TTTGTAGAGATCACGGAGC 59 NA Drosophila melanogaster 50 CG7188 FBgn0035871 FBtr0076711,FBtr0076712 2 2 2 109 3L 8301272 8301291 CAAGTACCTCTATCTGGGTG 58 8301055 8301200 AAAGTTGAGTCACTTGCAC 58 NA Drosophila melanogaster 50 CdsA FBgn0010350 FBtr0076688 2 1 1 80 3L 8122640 8122723 ATGATCACGACGTTACTGG 59 8122765 8122785 GCCATGAATTCGATAAACCTG 59 NA Drosophila melanogaster 50 ple FBgn0005626 FBtr0076957,FBtr0076956 3 2 2 167 3L 6709238 6709257 TTAACTCACCATACCACACC 59 6708456 6708813 TGAACCAGTATACCGTGGA 59 NA Drosophila melanogaster 50 fd64A FBgn0004895 FBtr0073192 3 1 1 164 3L 4020499 4020518 AATCGAGGATAACGACAGTG 59 4020644 4020719 TCATTTGAATCCTTTCCCGA 59 NA Drosophila melanogaster 50 Ubi-p63E FBgn0003943 FBtr0073178 2 1 3 119 3L 3902597 3902615 AAAGTAAAGCGCAATCAGC 59 3901740 3901758 GTCTTCACAAAGATCTGCA 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 yellow-g FBgn0041709 FBtr0072902 3 1 1 60 3L 2270501 2270953 AAGCCATTCGTCTATGTGG 59 2270459 2270477 CGGTGATGTCGTATACCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13807 FBgn0035323 FBtr0072878 3 1 1 78 3L 2263447 2263467 CTCCCATGATCATAACCAGAG 59 2263507 2263525 AAAGTTTCCATAGTCGCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33791 FBgn0035240 FBtr0091792,FBtr0091794,FBtr0091795,FBtr0091793 2 4 4 82 3L 1606830 1606848 CAATGGTGTCAAGCTACGA 59 1606891 1606971 CCAAGAGGAATACTTTATGGTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG7864 FBgn0035233 FBtr0072743 1 1 1 89 3L 1559024 1559042 AATAACCTTCAGACCCTCG 58 1559094 1559167 CAGTTGTAACAATCTGCTGG 59 NA Drosophila melanogaster 50 CG32320 FBgn0052320 FBtr0113433 1 1 1 84 3L 1400094 1400114 CAGTACTATCAGATCATGGGT 58 1400157 1400230 GTCTCATTGAGCTTATCTTCAC 58 NA Drosophila melanogaster 50 CR30066 FBgn0050066 FBtr0087563 1 1 1 60 2R 10177958 10177978 ACTAGATGGTGATTGTCAAGG 59 10177918 10177938 GAAACCAGATTCCAGTTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33228 FBgn0053228 FBtr0072331 3 1 1 148 2R 20556186 20556260 AATACGTGGCTGTCTATGG 59 20556056 20556074 AACCAGAAGCATTGAGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4612 FBgn0035016 FBtr0072346 3 1 1 226 2R 20412375 20412396 GCACTTCAAGAATCTGTATGTG 59 20411939 20411958 CGTACAAGAACTTGTTGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30419 FBgn0050419 FBtr0072275 1 1 1 70 2R 20103103 20116616 GGCAATTCCAACAAGATACTG 59 20103053 20103071 GTCCAGTAACTGGATGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30194 FBgn0050194 FBtr0071954,FBtr0071955,FBtr0071956 3 3 3 120 2R 18947456 18947474 TGGTCTACATCTACACGTC 58 18947617 18947635 ACATCCTGATCCTTGAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32833 FBgn0052833 FBtr0071990 3 1 1 60 2R 18872624 18872644 GAGCGATATACAAACTGAGTC 58 18872584 18872602 TTCAGGAATCCATCCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30187 FBgn0050187 FBtr0071997 2 1 1 81 2R 18804779 18805211 GAGGCACTTATTCTAGACCA 58 18804717 18804735 TAGTTCCATTATCGGGAGC 58 NA Drosophila melanogaster 50 CG13531 FBgn0034786 FBtr0071910 1 1 1 80 2R 18738535 18738606 GAAATCTTTCATCCGGACTG 58 18738474 18738493 ATCACTAAAGTCTTCCTGGT 57 NA Drosophila melanogaster 50 CG30268 FBgn0050268 FBtr0071877 1 1 1 80 2R 18601079 18601151 TCATAATTGCTGAGTTCGAG 57 18601193 18601212 TATCAAGGGACTGAGATAGC 57 NA Drosophila melanogaster 50 mRpS29 FBgn0034727 FBtr0071842 1 1 1 60 2R 18306708 18306726 GACACTGGATCAACAAGAC 58 18306666 18306685 TTGTTGCTCATGAACTTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr58b FBgn0041238 FBtr0071732 1 1 1 60 2R 17866005 17866025 TGCCTTAGTTATATTGGCTCC 59 17865965 17865983 TCAAATCGAACTGCATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34396 FBgn0085425 FBtr0112645 3 1 2 120 2R 16987563 16987730 AACTATAGGTTACGGCCAC 58 16987814 16987832 GAATAACTTGCCCAGATCG 58 NA Drosophila melanogaster 50 CG15226 FBgn0034550 FBtr0071564 1 1 1 197 2R 16677364 16677382 AGGATCTCCCACAATTTCG 59 16676648 16677203 AAGACCAATCCAATGGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15083 FBgn0034399 FBtr0086618 2 1 1 76 2R 14723835 14723922 TTGATAGGAACCCTGAAGGA 59 14723961 14723979 AAGGAGATGGCTTCAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15086 FBgn0034374 FBtr0086651,FBtr0086649,FBtr0086650,FBtr0086648 3 4 4 108 2R 14567578 14567653 CCTTACTACCAACGAGATGG 59 14567489 14567510 GGGATTCTAATTTCTGGTTGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30118 FBgn0050118 FBtr0086724,FBtr0113360,FBtr0113361 1 3 3 80 2R 14319246 14319326 CTGAAATATTTGGTGGCCC 58 14319184 14319205 CAGATAATGATGTACGACATCG 58 NA Drosophila melanogaster 50 GstE3 FBgn0063497 FBtr0086671 1 1 1 60 2R 14288352 14288373 TACAAGATCGTCAATCTGATGG 59 14288392 14288412 GATTGATCTTGAGGAACTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6459 FBgn0034259 FBtr0086892 1 1 1 91 2R 13559432 13559450 AGGTGGACATCATAAAGGG 58 13559301 13559377 GAAGACATCGTTGTACTCG 57 NA Drosophila melanogaster 50 qkr54B FBgn0022987 FBtr0086925,FBtr0086923,FBtr0086924 3 3 3 96 2R 13358304 13358323 AAAGCCAATGAGTACATACG 57 13358382 13358455 TTTCTATCTCGCCTTCCAG 58 NA Drosophila melanogaster 50 CG30321 FBgn0050321 FBtr0087286 3 1 1 78 2R 11680856 11680875 GAAATGGATGAAGTGGAACG 59 11680916 11680934 TTTCTATTCCACTCGTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8613 FBgn0033924 FBtr0087546 3 1 1 82 2R 10241976 10242051 AAGAATGCATCGCAAATCG 59 10242095 10242115 AGTGTAGCTTTGTAGTAGTCC 58 NA Drosophila melanogaster 50 CG6553 FBgn0033880 FBtr0087642 2 1 1 61 2R 9742518 9742536 AGAACCAGAACATTTGCCA 59 9742419 9742493 GGGTGTTTCACAGTAAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13339 FBgn0033871 FBtr0087632 3 1 1 141 2R 9712658 9712729 GAAAGTTGGACAATTGGGC 59 9712833 9712852 AACTATGTTGAGGATGTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Egm FBgn0086712 FBtr0088090 2 1 1 235 2R 7505191 7505209 AAGTACTTTACCCTGCGAC 59 7504913 7504933 TTGAAGAGTGGATTTCTGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18011 FBgn0033491 FBtr0088332 1 1 1 80 2R 6030782 6030800 AAAGCGATGATGACATCGA 59 6030841 6030922 CTTCATCCTTCTCTTTGATGTC 58 NA Drosophila melanogaster 50 CG1671 FBgn0033454 FBtr0088373 2 1 1 60 2R 5736481 5736499 GGACAACTGATAATCGTGG 57 5736523 5736541 AAGATTTAGGGTCGACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 brp FBgn0086376 FBtr0111001,FBtr0113488 2 2 2 238 2R 5424009 5424027 TGGAGAAGTCCCTACAGAC 59 5424438 5424530 GATCTTTAAGGCTTGTTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 Rme-8 FBgn0015477 FBtr0088618 2 1 1 80 2R 5062483 5062501 CTTTCACGCTCTTACTCGT 59 5062366 5062439 ATAATCTCACGAAAGCCCG 59 NA Drosophila melanogaster 50 pdm3 FBgn0033288 FBtr0114491,FBtr0088741 1 2 2 140 2R 4282117 4282546 CAGAACATGTTCGAGAAGC 58 4282745 4282764 GATATAGTCGGTTAGGTGGT 57 NA Drosophila melanogaster 50 CG30369 FBgn0050369 FBtr0088795 2 1 1 130 2R 4146973 4146991 GTTTGCATCAAAGGAGGAC 59 4147085 4147103 AGAATCCAGATGATGGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gapdh1 FBgn0001091 FBtr0100479,FBtr0088903 1 2 2 61 2R 3679711 3679729 GCTGAACGATAAGTTCGTC 58 3679668 3679686 GGTTGGAGTAACCGAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 EcR FBgn0000546 FBtr0086012,FBtr0086011,FBtr0086008,FBtr0086010,FBtr0086009 2 5 5 80 2R 1981446 1981524 GCGTATAATGAGTCAACCC 57 1981384 1981403 GTGAGTATGGTTATCTCGGT 58 NA Drosophila melanogaster 50 CG7849 FBgn0033060 FBtr0085976 1 1 2 60 2R 1964594 1964929 GAGCAACATTTGCAAGGTC 59 1964952 1964971 CCGAATAGAACTAGACTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Act42A FBgn0000043 FBtr0086029 3 1 1 60 2R 1902738 1902756 AAAGGACTCTTATGTCGGC 59 1902696 1902716 GTACTTCAGGGTAAGGATACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR33987 FBgn0053987 FBtr0100032 1 1 1 60 2L 22019824 22019842 TTCAACACGAAACTGTCAC 58 22019863 22019884 CGTTCACTGAATAAATTCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33801 FBgn0053801 FBtr0091805 1 1 1 67 2L 21417288 21417306 TTTAAAGGAACATGGCGGT 59 21417336 21417355 CGCATTTATAAGTGGCAGTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31626 FBgn0051626 FBtr0081485,FBtr0081486 1 2 2 62 2L 21233482 21233635 GAAACTCTTCGTCTTCGCT 59 21233438 21233456 TTAAGGTGGGAAACATCGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Oseg5 FBgn0032891 FBtr0081451 3 1 1 88 2L 20833677 20833696 TACAGCATCTGGTATTGTCC 59 20833447 20833626 CCAAATTCCGTCGTATCCA 59 NA Drosophila melanogaster 50 CG9323 FBgn0032883 FBtr0081459 2 1 1 62 2L 20754742 20754818 AGTTGATCAAAGCCATCGA 59 20754698 20754716 AAATATAGTCCTCGCCGAG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG5705 FBgn0032486 FBtr0080444 3 1 1 60 2L 13221125 13221143 CACAACCTCAATGGTTTCC 58 13221165 13221185 GCAACTTCTCTATTAGTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5525 FBgn0032444 FBtr0080411 2 1 1 114 2L 12691494 12691575 CCAAGACCGATATGGATCAC 59 12691399 12691417 CCTGACTTCTTGATCTGCT 58 NA Drosophila melanogaster 50 CG14934 FBgn0032381 FBtr0080275 2 1 1 95 2L 11848827 11848916 GAGAACTGAAGAACGAGCA 59 11848972 11848993 GATTGGGCTGTTCTATAAAGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6201 FBgn0032343 FBtr0080229 3 1 1 120 2L 11111073 11111091 AAGGAACGCGATAATCTGG 59 11110913 11110992 TATAGAAACCATTGACGGATCC 59 NA Drosophila melanogaster 50 CG5343 FBgn0032248 FBtr0080044 1 1 1 60 2L 10430377 10430451 CTTCGAGGTTCAGGTTCTC 59 10430335 10430354 GTAGTTACTGGCCCTAAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13139 FBgn0032230 FBtr0080002 2 1 1 158 2L 10365532 10365550 ATCGCCCTAATGAATTCCG 59 10365671 10365780 CAGCATGAATCTGAATGCTC 59 NA Drosophila melanogaster 50 CG13127 FBgn0032176 FBtr0079933 2 1 1 60 2L 10027441 10027460 ACAAGTTGCTCAGAGATCAG 59 10027482 10027501 TCTTCCAAGTTATCATCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13126 FBgn0032168 FBtr0079892 3 1 1 144 2L 9952873 9952891 CAATCCGATAGCTCAAGCT 59 9952688 9952765 AATAGGCAGACTTTCCGTG 59 NA Drosophila melanogaster 50 Cpr30F FBgn0051876 FBtr0079897 2 1 1 146 2L 9932879 9932897 ACTACGATTTCGCCTACTC 58 9932751 9932769 CATCCGAAGTGTAGTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4036 FBgn0032149 FBtr0079870 3 1 1 62 2L 9791682 9791760 TACCTATGCCAAACCTCTC 58 9791786 9791804 AATGCTCAAACTGGTACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fu2 FBgn0029173 FBtr0079674 3 1 1 63 2L 8464622 8464640 GATATCAGCATGACCCAGG 59 8464667 8464685 GATCCGTATTATGGTGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Akap200 FBgn0027932 FBtr0079666,FBtr0079665 2 2 4 70 2L 8428059 8430290 CAAATTGAGGTGGATCTCG 58 8430324 8430342 TCCTGTGTTGTAACGTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13784 FBgn0031897 FBtr0110799 3 1 2 81 2L 7208574 7209361 CACTATCTCAATGACCTGGAC 59 7208513 7208531 ACACGACTAGCATGAAGTC 59 NA Drosophila melanogaster 50 CG13982 FBgn0031811 FBtr0079256 1 1 1 171 2L 6413222 6413240 ATCTCTTATCGAGGACCAC 57 6413431 6413449 TTCTGCATTTGAATGTCCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9098 FBgn0031762 FBtr0079228 3 1 2 81 2L 6011719 6011793 GAATCTGGAAGCAATGAGC 58 6011656 6011674 ATTCTCACCCAGATACACC 58 NA Drosophila melanogaster 50 ifc FBgn0001941 FBtr0079179 3 1 1 147 2L 5986883 5987624 AACATCACCGTTACCAAGG 59 5987734 5987753 GGGTTAATAATCAGTGGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8885 FBgn0031656 FBtr0079052 3 1 1 142 2L 4968553 4968571 ATTAGTTGATTCGCAGGGA 58 4968366 4968447 TTTCAACTTCATCGACGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2837 FBgn0031646 FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403 1 4 4 164 2L 4904902 4904923 GTTTACTCCAATATACCACCGA 59 4904700 4904721 CTTGTTGAACGATTGATCATCC 59 NA DesignNoJunction Drosophila melanogaster 50 ine FBgn0011603 FBtr0077447,FBtr0077448,FBtr0077446,FBtr0077449 2 4 4 107 2L 4468743 4468761 GAAGACTGTCGAAGAACGT 59 4468589 4468672 ATACCCAGATGGCAAAGAG 59 NA Drosophila melanogaster 50 Psf2 FBgn0031599 FBtr0077461 2 1 1 86 2L 4386822 4386840 AAGTGCCGAATTGTACCTC 59 4386696 4386772 GGTAAAGAACTTTGAGCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16712 FBgn0031561 FBtr0077546 3 1 1 93 2L 3696458 3696536 GGATCCTATCTGTGGACTG 58 3696383 3696401 GGTTTCGGGATGATAACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 oaf FBgn0011818 FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780 1 4 4 103 2L 2495396 2495415 GTATTACCTCCAACATTGGC 58 2495481 2495581 GATTTGAACCTCATTGCGA 58 NA Drosophila melanogaster 50 CG15387 FBgn0031403 FBtr0113015,FBtr0077841 3 2 2 61 2L 2226104 2226124 AACTCGAAGAAACTCTCAGAG 59 2226063 2226082 TGCATCATGAGAATCATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me28S-C3351 FBgn0086069 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:K2:42Ec FBgn0011894 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG14584 FBgn0031181 FBtr0077213 3 1 1 60 X 21348454 21348475 AGCTTCTACGATATGATCAAGG 59 21348415 21348434 TCTCCAGATCGCTATAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pbprp2 FBgn0011280 FBtr0077303,FBtr0077304 3 2 2 185 X 20291523 20291615 CTGCAGATAATGGATGAATCC 58 20291826 20291844 CTCGTAAATGCATTCCTCG 58 NA Drosophila melanogaster 50 D2R FBgn0053517 FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461 1 4 5 80 X 19905587 19920746 TACTTTCTGGTAAATGGAGC 57 19905526 19905545 AGTAGAGCATATCACATCCA 57 NA Drosophila melanogaster 50 CG14207 FBgn0031037 FBtr0074733,FBtr0074734 1 2 2 94 X 19504475 19504493 ATTAGCTCACCCTTGATCC 58 19504616 19504634 TTCACAACAATTTCCTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 Arpc3B FBgn0065032 FBtr0113478,FBtr0074410 1 2 2 60 X 16999584 16999602 CCCACTGTTGATATTCCCA 58 16999542 16999563 TGTTCGATTTCCAGAAGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Chc FBgn0000319 FBtr0112798,FBtr0074180,FBtr0112797,FBtr0074182,FBtr0074181,FBtr0074179 3 6 6 95 X 15722670 15722757 CTTTATCAGTGTTACGACTTGC 59 15722596 15722615 CTGAATCAAATAGGGCATGG 58 NA Drosophila melanogaster 50 Lsp1alpha FBgn0002562 FBtr0073651 1 1 1 60 X 12385039 12385057 TGAAGACTAGCCTGTACGA 59 12385079 12385099 GAGAAAGTTGGAATCTTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15245 FBgn0040936 FBtr0071400 1 1 1 61 X 9762386 9762404 ATGATCTTGGCCCAAAGTC 59 9762343 9762362 TGCGGATTGTAGAAGATCAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4617 FBgn0029936 FBtr0071019 2 1 1 171 X 6997968 6997986 GTCAGAGTCTTTACATGCG 58 6997753 6997833 CTGGTGAAGTCTAGATCCT 57 NA Drosophila melanogaster 50 CG5928 FBgn0029836 FBtr0100295,FBtr0070871 3 2 2 81 X 5962703 5963094 ACACCTTTATTCAGAAGCC 57 5963139 5963157 TTGCCTCCTATGATATCCA 57 NA Drosophila melanogaster 50 MAPk-Ak2 FBgn0013987 FBtr0070837,FBtr0070838,FBtr0070839 3 3 3 95 X 5654849 5655216 GTAGACTACGATCAGATGCA 58 5654773 5654792 GTATAACTCCATCTCCTCGA 57 NA Drosophila melanogaster 50 SK FBgn0029761 FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070765,FBtr0070767,FBtr0070769,FBtr0070766 3 7 7 81 X 5270146 5270164 GGAACAGATCTCATCTGGA 58 5270207 5272344 TTCCATATACCTAGGGTAGTC 57 NA Drosophila melanogaster 50 CG4293 FBgn0024983 FBtr0100475,FBtr0070090,FBtr0070089,FBtr0100476 1 4 4 158 X 422615 422633 TTTCACCACCATATACGCT 58 422414 422432 AAGGTTACTAGGTGATCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG1910 FBgn0022349 FBtr0085839,FBtr0085840,FBtr0085838,FBtr0085841 2 4 4 87 3R 27576299 27576375 AATGTAAATGGTGAGCCCA 59 27576425 27576444 TGGGATTGGTTTAGTTACAC 57 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG7866 FBgn0039725 FBtr0085504,FBtr0110889 2 2 2 259 3R 25759564 25759582 TTTCCACATAGTGGAGCAC 59 25759805 25759972 ATCGCTGGCATTAAATTGC 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 spz FBgn0003495 FBtr0085144,FBtr0085137,FBtr0085138,FBtr0085145,FBtr0085140,FBtr0085143,FBtr0085139 1 7 12 133 3R 22892191 22892337 ATCGGATACCTTTGTCTTCC 59 22892077 22892095 AGTTTCTAAGGTGTTGGCT 58 NA Drosophila melanogaster 50 ms(3)K81 FBgn0002838 FBtr0085063 2 1 1 60 3R 22702055 22702074 CAATTCTTCCGACGATACAC 58 22702097 22702115 CAAACTCAGATTCGAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slo FBgn0003429 FBtr0084683,FBtr0100635,FBtr0084685 2 3 17 92 3R 20521092 20521110 AGGACATTAAGGACGAGAC 58 20521838 20527818 GGTGTTCATCTAAGTCATCG 58 NA Drosophila melanogaster 50 CG31203 FBgn0051203 FBtr0083926,FBtr0083924,FBtr0083923,FBtr0083925,FBtr0083927 3 5 5 87 3R 16575021 16575039 GATGGAATTACGGAAAGCC 58 16575089 16575200 GGAACATAACCCTAAACACG 58 NA Drosophila melanogaster 50 CG17836 FBgn0038661 FBtr0083701,FBtr0113246,FBtr0083702,FBtr0083703,FBtr0083700 2 5 5 92 3R 14751507 14751633 AATGATGATCGGTTCGAGG 59 14751689 14751707 CTCTACGATGTCTGCATGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14305 FBgn0038630 FBtr0083634,FBtr0083636,FBtr0083635 2 3 3 60 3R 14425300 14425318 GTGGACGACCATATGATCC 59 14425342 14425360 ATGAACAGAATGACTCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ald FBgn0000063 FBtr0083478 1 1 1 80 3R 13499183 13499302 CATCATGCTGGTTCATATGG 58 13499345 13499363 TACTGTAGTAGTTCGGTGC 58 NA Drosophila melanogaster 50 CG31088 FBgn0051088 FBtr0083241 1 1 1 79 3R 11776229 11776247 CAATGCCATTAACTCGCAC 59 11776115 11776133 AATAAGACCCTGAAGCTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9611 FBgn0028487 FBtr0082846,FBtr0112939,FBtr0082847 2 3 5 158 3R 9522676 9522694 AAGACTCTGCACGATAGAG 58 9522056 9522556 TCGTAGTTTGTATCTATCCGG 58 NA Drosophila melanogaster 50 CG6783 FBgn0037913 FBtr0100321,FBtr0100320 2 2 3 254 3R 7390345 7390364 ATACCTACACCCTGACTACC 59 7390042 7390060 CTTAGACGGCCTTGTAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31373 FBgn0051373 FBtr0082318 3 1 1 67 3R 6534907 6534925 GTTACGTCACTACGATTGC 58 6534858 6534876 TAACGATAATACGCAGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi2 FBgn0037410 FBtr0078592,FBtr0078593 2 2 2 149 3R 2037522 2037818 CAAGGACCAGTACAAGCTC 59 2037931 2037949 CGGAGTCCATATTTCAGCA 59 NA Drosophila melanogaster 50 Os-E FBgn0010403 FBtr0078655 1 1 1 60 3R 1802263 1802332 AACTGGCGTTACTGATGAG 59 1802221 1802239 CTCGTCCTCATGAATTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32425 FBgn0052425 FBtr0078205,FBtr0078202,FBtr0078203 2 3 5 165 3L 20505332 20505350 CATCATCAATGATGAGCGC 59 20505479 20505632 GATCACTGGTAGCTTTCCC 59 NA Drosophila melanogaster 50 rdgC FBgn0004366 FBtr0074834,FBtr0074833,FBtr0074835 3 3 4 125 3L 20253973 20253993 GCAATCTTCATCCAGAAATGG 59 20254080 20254321 TTTGTATAGCTCAGCCTGG 59 NA Drosophila melanogaster 50 CG32199 FBgn0052199 FBtr0075106 2 1 1 103 3L 18605854 18605942 CTGAAAGAATCCCTAAATTCGG 59 18606006 18606024 TTGTCGTAGTTGTCTTCCC 59 NA Drosophila melanogaster 50 CG34253 FBgn0085282 FBtr0112447 2 1 1 60 3L 18079885 18079903 ACTTGGAAGACCAATCCAG 59 18079843 18079863 CATCACCCATGTAGATTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4169 FBgn0036642 FBtr0075309 2 1 1 79 3L 16578861 16578879 GATAAGGATGTGGCCAGAG 59 16578922 16578940 TTAATTAGACCACCGTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdh FBgn0011693 FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536 1 4 4 130 3L 16346821 16346839 ATCATTCCCGTTTACGGAG 59 16346645 16346663 ATGTCCGTCATTGTAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Hsc70-1 FBgn0001216 FBtr0075761 2 1 3 107 3L 13967867 13968826 CGATCTTTGTCTCAGGGTC 59 13968895 13968915 GGGATATTATGTGGCATTGTG 59 NA InUTR Drosophila melanogaster 50 CG16719 FBgn0036029 FBtr0076394 3 1 1 60 3L 9678958 9678976 TACATCAATTCCATTGCCG 58 9678999 9679018 CATTCTTGAGGGCAATTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11537 FBgn0035400 FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117 2 5 5 80 3L 3130292 3130310 GGTCTCGGTCTTTATAGCC 59 3130170 3130248 CCAAACACTTGCATGAAGG 59 NA Drosophila melanogaster 50 Ptpmeg FBgn0035133 FBtr0072543 3 1 4 133 3L 328343 352690 CGTCATGTGTTTCTATCTGC 59 352849 352870 GGTGTTCTAATGCGTTAAAGTC 59 NA Drosophila melanogaster 50 Mov34 FBgn0002787 FBtr0072290 1 1 1 60 2R 20291455 20291473 AACCACCAGATTGTCTACC 58 20291497 20291515 CATTGGTTATATCGGGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3065 FBgn0034946 FBtr0072153,FBtr0072155,FBtr0072154 1 3 3 60 2R 19859012 19859033 CAAGCCGATAAAGATTAAGCTG 59 19859052 19859072 AGATACGATCTGGTACTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pita FBgn0034878 FBtr0072112 3 1 2 156 2R 19437598 19437616 AGTTCATCTGCGTGTACTG 59 19437404 19437478 GAGTGGACTGTCTCATGAC 59 NA Drosophila melanogaster 50 ventrally-expressed-protein-D FBgn0053200 FBtr0071826 3 1 1 71 2R 18296420 18296439 CTAAGATTACAAGCCCAGGA 58 18296471 18296491 CCAGAACTTCTTCCTTATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gp150 FBgn0013272 FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815 2 4 4 82 2R 18213224 18213297 AAGTCCAAGAGCAAATCCA 59 18213341 18213361 TCGTCGTAGTCATATTGAGAG 58 NA Drosophila melanogaster 50 CG30280 FBgn0050280 FBtr0071759 2 1 1 103 2R 18001831 18001849 TCTCCACATATGATCGGGA 59 18001915 18001996 ATTAAGGTTGCTGTCCAGAC 59 NA Drosophila melanogaster 50 CG17974 FBgn0034624 FBtr0071611 3 1 1 86 2R 17236801 17236879 CCCATATTTGAGGACTACGG 59 17236734 17236755 ACGAGTAAATCTCATGATGGAG 59 NA Drosophila melanogaster 50 mago FBgn0002736 FBtr0071569 3 1 1 63 2R 17016322 17016340 AAGAACGACACCATGATCC 59 17016367 17016385 GCTTCAGTTCTTCCATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34199 FBgn0085228 FBtr0112392 1 1 1 60 2R 16175679 16175697 CTCAGTTGACTTACTCCAC 57 16175720 16175739 TGTCTGTTGTATCGATACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 POSH FBgn0040294 FBtr0086828 1 1 1 173 2R 13458662 13458747 TACATGTAAGATCCGGCTC 58 13458884 13458902 GTTCCTTGCTTCCTTTCAC 58 NA Drosophila melanogaster 50 scb FBgn0003328 FBtr0087370,FBtr0087369 3 2 2 112 2R 11144951 11144970 TATCCAAACATCAGGAGACG 59 11145042 11145127 GAAGAAGCCAAACTTGTATAGC 59 NA Drosophila melanogaster 50 CG10249 FBgn0027596 FBtr0087429,FBtr0112929 3 2 4 124 2R 10793454 10797742 CTTTGATGTGGCAGATTCC 58 10793348 10793366 TTTCATATTGGACCTCCGC 59 NA Drosophila melanogaster 50 CG18371 FBgn0033893 FBtr0087599 3 1 1 72 2R 9916435 9916453 GGCTACTGAATATCGGCAG 59 9916489 9916507 GAAGTGATCTCCTTGGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17059 FBgn0040754 FBtr0087739 3 1 1 143 2R 9107892 9107910 AACATGAAACCGTCTCTGG 59 9108327 9108345 ATTGTAGAAGTCAGCGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18004 FBgn0033566 FBtr0089729,FBtr0089728 3 2 3 82 2R 6773587 6773605 CTATTGAGTCCGGAATGCA 59 6773648 6773727 TCATTGGGATAACACTTAGAGG 59 NA Drosophila melanogaster 50 Mmp2 FBgn0033438 FBtr0088501,FBtr0088500 1 2 2 111 2R 5500119 5500206 TGTGTTCTTCATAGGTCGC 59 5500026 5500044 ATCGATGTGGGTCAAAGTG 59 NA Drosophila melanogaster 50 RpL31 FBgn0025286 FBtr0088526,FBtr0088525 3 2 3 114 2R 5475178 5475196 GTCTGAACAAGCACATCTG 58 5475344 5475362 TAAGTGTACAGCTTGTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 Rme-8 FBgn0015477 FBtr0088618 3 1 1 80 2R 5057396 5057414 GGAAATTCAATGCATCGGA 58 5057278 5057353 TTGACAGTAGAGTTATCCGG 58 NA Drosophila melanogaster 50 CG13744 FBgn0033363 FBtr0088666 3 1 1 186 2R 4902866 4902887 CAGATAAATGTCGAGATCAAGG 58 4902064 4902145 CGTTATGATAAATTCCTGGCTG 59 NA Drosophila melanogaster 50 l(2)01289 FBgn0010482 FBtr0086137,FBtr0110901 1 2 4 80 2R 2611283 2611353 TATTCGAGGGCGAATTGAG 59 2611221 2611240 TCAGCTCAATACGATCTTCG 59 NA Drosophila melanogaster 50 gus FBgn0026238 FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753 3 6 6 101 2R 1005301 1008279 GTGGATTAGATCCCGAACC 59 1005218 1005236 GAAGCTGTTGAATGTGCTC 59 NA Nonspecific Drosophila melanogaster 50 CG17082 FBgn0039994 FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289 1 6 6 87 2R 637011 642015 TTGAACAAGGGTTAGAGGT 58 642066 642084 AGTTGTACAATCGCTTCAG 57 NA Drosophila melanogaster 50 CG10702 FBgn0032752 FBtr0081175,FBtr0081176,FBtr0081174 1 3 3 80 2L 19067507 19067579 AAGGACAAGTACGTCATGG 59 19067445 19067463 GGAAATAACATAGCCGTGC 58 NA Drosophila melanogaster 50 CG15134 FBgn0032621 FBtr0080949,FBtr0114502 3 2 2 84 2L 16904394 16904471 TAAGACAGGGAATCATTGTG 57 16904517 16904536 TTGTTCTTGTACTGATGCTC 57 NA Drosophila melanogaster 50 pkaap FBgn0040079 FBtr0080826 3 1 1 60 2L 16290159 16290179 CACATCTTCGATAACTACGTG 58 16290199 16290288 GATGAGTGGTGGAATTATCTC 57 NA DesignRelaxed Drosophila melanogaster 50 CG4793 FBgn0028514 FBtr0080793 2 1 2 111 2L 15924628 15924647 CGTATATCAAACTGGTGGTG 58 15924721 15926477 GCTAATAATGGTGCCTTCG 58 NA Drosophila melanogaster 50 CG34160 FBgn0085189 FBtr0112351 2 1 1 73 2L 10580080 10580098 ATAGACGATTATTGTGCCG 57 10580135 10580153 TAGATTTCTAGCCCTTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 capu FBgn0000256 FBtr0077511,FBtr0077513,FBtr0077512,FBtr0077510 1 4 4 85 2L 3879058 3884044 AGTTCGAAGGTCAAATGCT 59 3878991 3879009 TTCCTGATTAGCATCACCG 59 NA Drosophila melanogaster 50 Uch FBgn0010288 FBtr0077844 1 1 1 80 2L 2213667 2213686 AAGATGACACCTTGGAATGG 59 2213548 2213624 GCTTCTCATAGGTTTCGCT 59 NA Drosophila melanogaster 50 aru FBgn0029095 FBtr0078033,FBtr0078031,FBtr0078032 1 3 3 87 2L 862623 862641 TAAGATTGTGCTGGTCACC 59 862490 862575 ATCAAGGATCTCCAAGTATTCG 59 NA Drosophila melanogaster 50 CG9066 FBgn0030703 FBtr0074166 2 1 1 138 X 15782301 15782395 TGGGAAATGCAGTTTAAGGA 59 15782182 15782200 ACTTGGGTAGGTTCTTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 toy FBgn0019650 FBtr0089185 1 1 1 83 4 1026627 1026703 CAAACACAGGTGTCATTTCTG 59 1026748 1026766 AATTGCTTCCCGTTAGGTC 59 NA Drosophila melanogaster 50 CG2191 FBgn0039873 FBtr0085860 3 1 1 92 3R 27586673 27586694 GACCTTCATCTTCATATTGACG 58 27586543 27586620 ACATTAAATCCGGTCACCT 58 NA Drosophila melanogaster 50 PH4alphaPV FBgn0051015 FBtr0085670 1 1 1 80 3R 26473289 26473381 TGTTAAAGCTTAACCAGCAC 58 26473228 26473246 ACAGTTTAATATCGTGCGG 57 NA Drosophila melanogaster 50 CG15529 FBgn0039748 FBtr0085567 2 1 1 146 3R 25977971 25977989 CCTGATGGAAGTCAGATCG 59 25978098 25978365 TCCACAATGACGTAATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2010 FBgn0039667 FBtr0085428,FBtr0085427 1 2 2 119 3R 25323843 25323862 TAAGTTTATACAGCGCCAGG 59 25323944 25324030 ACAATGATCTTGCAGTTGC 59 NA Nonspecific Drosophila melanogaster 50 dys FBgn0039411 FBtr0113293,FBtr0113294 1 2 3 81 3R 21914065 21921925 CGGCATGTTTACAAGATTCG 59 21914003 21914024 TATCTCCGCATTTATGAGATCG 59 NA Drosophila melanogaster 50 KaiRIA FBgn0028422 FBtr0083938 1 1 1 80 3R 16477312 16477389 CTATGAATCTGCTGAGTACC 57 16477251 16477270 ATCACTTTGATAACAGGTCC 57 NA Drosophila melanogaster 50 l(3)05822 FBgn0010877 FBtr0083596,FBtr0083595 2 2 2 64 3R 14115517 14115535 TGTTTGTATCACTTCCCGG 59 14115413 14115490 GTAACCAATTCGTTCTCCTG 58 NA DesignRelaxed Drosophila melanogaster 50 MESK4 FBgn0043069 FBtr0083367 1 1 1 84 3R 12815101 12815119 ACACTTTAATCCTGGACCG 59 12815166 12815249 TTGTTGATCCACAAGATCCT 58 NA Nonspecific Drosophila melanogaster 50 gish FBgn0011253 FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083265,FBtr0083261,FBtr0100333,FBtr0083263 3 7 8 116 3R 12125399 12126972 TGGTTCAGTACAGGTTGTG 59 12127052 12127070 GTTTCATCGACCACTTCGA 59 NA Drosophila melanogaster 50 CG8927 FBgn0038405 FBtr0100110,FBtr0083254 3 2 2 150 3R 12010826 12010844 GAATACCATACTTCCAGCG 57 12010958 12010976 CTGGAACTGTGATTGTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6974 FBgn0038285 FBtr0083042 1 1 1 60 3R 10904856 10904874 AAACCCGAAATGCATTGAC 59 10904814 10904835 CGGTACAATATCTTATTGCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kif19A FBgn0038205 FBtr0082912,FBtr0082911 2 2 2 80 3R 9939295 9939315 GCATATGATTATCTCCCACTG 58 9939173 9939254 CCTTCTGATTCAATGTCGTC 58 NA Drosophila melanogaster 50 CG14375 FBgn0038147 FBtr0082762 3 1 1 60 3R 9215470 9215777 AATCATGGTTTAACCGACCT 59 9215429 9215449 AAGGGATAATCAAGTTCACCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG17100 FBgn0037813 FBtr0082246 2 1 1 145 3R 6215140 6215159 CATCCGGTCAAGTATGAGAG 59 6222525 6223086 TGCCTCGATGTCTTATTACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9839 FBgn0037633 FBtr0081934 1 1 1 97 3R 4630978 4630996 GGAATTGGAACAGCAAGAG 58 4630834 4630917 AGTCATCCATATCGTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR34262 FBgn0085291 FBtr0112457 1 1 1 103 3L 21953026 21953044 GATCTTTCCCACAAACGTG 59 21953111 21953190 AATACTTGGCCAGTAGAGG 58 NA Nonspecific Drosophila melanogaster 50 CG32442 FBgn0052442 FBtr0089798 2 1 2 190 3L 21521996 21522073 ACTTTAAGCTCTACTGGAAGG 59 21521761 21521779 AGTGGCGGTGATTATTAGC 59 NA Drosophila melanogaster 50 CG14127 FBgn0036219 FBtr0076037 3 1 1 144 3L 11875821 11875893 AGAGCGAAGTAAATCAAGAGG 59 11875999 11876017 AAGATCATCTCGCAGATGC 59 NA Drosophila melanogaster 50 CG10543 FBgn0034570 FBtr0071524,FBtr0071523,FBtr0071525 3 3 3 140 2R 16891581 16891599 CTGCAACTATTGCGATCAG 58 16891759 16891844 AAGCTACCCATATCTTCTTCG 59 NA Drosophila melanogaster 50 Aats-cys FBgn0027091 FBtr0087234 1 1 1 80 2R 12032151 12032172 GGAAGGATACTCTTGACTACTC 59 12032212 12032290 TCAGGAAGAACTCATTGAGG 59 NA Drosophila melanogaster 50 CG8187 FBgn0034027 FBtr0087355 1 1 1 97 2R 11428032 11428050 GTTTCAGACACAAACTGGG 58 11427900 11427975 GTACTCCAGTCATATTGAGATCC 59 NA Drosophila melanogaster 50 CG8791 FBgn0033234 FBtr0088849 3 1 1 162 2R 3816168 3816186 AGGGTTGTTCTACCTTTCC 58 3816312 3816392 CACAGGCATAGACTGACTG 59 NA Drosophila melanogaster 50 Spf45 FBgn0086683 FBtr0111239,FBtr0111241,FBtr0111240 3 3 3 102 2L 22959943 22959962 AATCATTCACGAATCGTTCG 59 22959799 22959878 ATTAAGGTCCACTACAGCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Stam FBgn0027363 FBtr0080143 3 1 1 135 2L 10860804 10860822 CACTTCTGCTCCATCTCAG 59 10860987 10861005 AGTGGGTTGAGTCAAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 yip2 FBgn0040064 FBtr0079876 3 1 1 200 2L 9916798 9916819 GAAACTGGAGGATATTGATCTG 58 9916980 9917057 TACTTTAGCTTCTTGCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 tRNA:V3b:84Db FBgn0011999 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-G2173 FBgn0086028 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30299 FBgn0050299 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:R2:42Ab FBgn0011956 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 su(f) FBgn0003559 FBtr0113732,FBtr0113733,FBtr0113734 2 3 5 278 XHet 78860 79327 GATATGCTGAGAATGTGGG 57 79569 79587 ATAGTAGCTCTACGCTGAC 57 NA DesignRelaxed Drosophila melanogaster 50 CR32745 FBgn0052745 FBtr0070932 3 1 1 201 X 6174555 6174573 CATTGCGATGAGACATACG 58 6174323 6174341 ATTATGGAATTCCACGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 roX2 FBgn0019660 FBtr0073515 1 1 2 60 X 11473567 11473586 TACGTTACTTCCGAGATCCT 59 11473609 11473627 TACACTGGTTGGATTTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41483 FBgn0084043 FBtr0111178 2 1 1 97 X 22048784 22048802 TTTACAGATCCTTCGAGCG 59 22045002 22048725 GGTAATAATCAAGCTCAGCTG 58 NA Drosophila melanogaster 50 DIP1 FBgn0024807 FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370 1 4 4 170 X 21497272 21497350 TTCTTTGCATTATGCGTCC 58 21497120 21497138 GAGAGTTGCACACTTTCAC 58 NA Nonspecific Drosophila melanogaster 50 sw FBgn0003654 FBtr0089405 1 1 13 115 X 20105932 20105950 TAAGCGTCTACAATGTGCA 59 20101678 20105853 ATCAAATGCAAGCACATCG 59 NA Nonspecific Drosophila melanogaster 50 CG32529 FBgn0052529 FBtr0100839,FBtr0074800,FBtr0074801 2 3 3 81 X 19795510 19795910 GACCGTATATGGAATATCCACC 59 19795952 19795970 ATATGAGGCCCAGTATGGA 59 NA Drosophila melanogaster 50 CG18809 FBgn0042132 FBtr0074811 2 1 2 89 X 19637537 19637555 TGATAACGTAACGTAGCCG 59 19636915 19637485 GTAGTGATGATTTGTTTGCG 57 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 Cdc42 FBgn0010341 FBtr0074751,FBtr0074752 2 2 2 64 X 19592047 19592066 GCTCATCTCGTATACAACCA 59 19592093 19592111 CATAGTTGTCGAACACCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14207 FBgn0031037 FBtr0074733,FBtr0074734 3 2 2 121 X 19504572 19504590 TAACAAAGTGCTGAAGCTG 58 19504747 19504765 TCTTTGTGTCCGACTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 betaCop FBgn0008635 FBtr0074576 2 1 1 83 X 18276341 18276428 CTTCGGCAATATTGTTTACG 57 18276277 18276295 ATGTAGTCCATGATGTCGA 57 NA Nonspecific Drosophila melanogaster 50 CG32495 FBgn0052495 FBtr0089800,FBtr0089799,FBtr0089801 1 3 3 82 X 17798672 17798835 ATAAGCTGCACAATATGCC 58 17798881 17798899 CTTTGCATAGATGTCCCAC 58 NA Nonspecific, InUTR Drosophila melanogaster 50 CG32556 FBgn0052556 FBtr0074477,FBtr0074478 2 2 2 97 X 17569346 17569364 GTCGATTACCTGATGACCA 58 17568894 17568912 GGATAACTGGATGTGGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 mei-218 FBgn0002709 FBtr0100640,FBtr0100639 1 2 2 89 X 17033337 17033420 TCTAGATTGAGCCAAAGACG 59 17033267 17033285 AGGATTTGGTAGTTGCTCG 59 NA Nonspecific Drosophila melanogaster 50 CG12433 FBgn0030811 FBtr0074379 3 1 1 60 X 16916696 16916716 GACGATGATATCCATGATGGT 59 16916738 16916756 CCTCCTCTTCATAAGCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9992 FBgn0030744 FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309 2 5 5 94 X 16277004 16277023 TAGTCCTACTTCCGAGACTG 59 16276867 16276947 CAAAGTTGTGCAAGTCCTG 59 NA Drosophila melanogaster 50 CG3679 FBgn0027521 FBtr0074222 3 1 1 96 X 16198921 16198939 CTCTTGTCCGGATGATAGG 58 16198999 16199200 CTTTGTGCCTTGAAGTTCG 59 NA Drosophila melanogaster 50 vap FBgn0003969 FBtr0074141,FBtr0074143,FBtr0074142,FBtr0074140 2 4 4 81 X 15894965 15894983 ACGATCTTTGGTCATGGTC 59 15894837 15894921 CTCCATGTATTGTTCCTTGC 58 NA Drosophila melanogaster 50 Lcch3 FBgn0010240 FBtr0074129,FBtr0074127,FBtr0074128 2 3 3 96 X 15821838 15821859 TGCCGTTAACTATACTTACTGG 59 15821915 15822000 GGATCTTTCACTCTTTCCGA 59 NA Drosophila melanogaster 50 CG8952 FBgn0030688 FBtr0074193 3 1 1 60 X 15660201 15660219 GGCAGGTCATACTGAAGAG 59 15660159 15660177 GATATGATCGATCCTCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8944 FBgn0030680 FBtr0074200 2 1 2 60 X 15638856 15638874 ACGATAAGATGTCCGATGC 59 15638814 15638834 CATAGGATCGAATTGAAAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8128 FBgn0030668 FBtr0074053 1 1 1 75 X 15592701 15592720 TTTACAAGAGCATACTCGTC 57 15592830 15592848 CAAATCGATCCGTAATGCC 59 NA DesignNoJunction Drosophila melanogaster 50 cngl FBgn0029090 FBtr0089293 2 1 2 99 X 15284522 15284607 TGTTTATGCGAGGTGACTC 59 15284441 15284459 GCATGATGACGACTAGGAC 59 NA Drosophila melanogaster 50 CG33248 FBgn0053248 FBtr0073924 1 1 1 124 X 14127551 14127569 CTTTAACAAGCCGGAACTG 59 14127288 14127464 CAACTCTGACTTCGCTAGAG 59 NA Drosophila melanogaster 50 CG32627 FBgn0052627 FBtr0073814,FBtr0073815,FBtr0113441,FBtr0073813 2 4 4 114 X 13606925 13607018 CAAAGCCATGATTAGAAGACTG 59 13607093 13607111 GTTGCGTTTGTTCTCACAG 59 NA Drosophila melanogaster 50 CG15717 FBgn0030451 FBtr0073723 1 1 1 60 X 13023881 13023899 CATCTGGGAATCCTTTGCT 59 13023921 13023941 ATAGTGATAGTTCTTGGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hop FBgn0004864 FBtr0073457 1 1 1 129 X 11258444 11258524 GTATCCAGATTCGATATCGCT 59 11258335 11258353 CATGAAATTGCCATCGCTC 59 NA Drosophila melanogaster 50 CG15211 FBgn0030234 FBtr0112977,FBtr0073376,FBtr0112975,FBtr0112976 2 4 4 187 X 10667187 10671999 AATTGTGGAGTTTGTGCTG 58 10672150 10672250 TCAGCTCCGAGAATATCCA 59 NA Drosophila melanogaster 50 CG1354 FBgn0030151 FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386 3 4 4 161 X 9674775 9674793 TCTGCTCAAGAACTTGGAC 59 9674918 9675202 AAGGCCTCAATATCATGGG 59 NA Drosophila melanogaster 50 His3.3B FBgn0004828 FBtr0071345,FBtr0071347,FBtr0071346 2 3 3 218 X 9048446 9048464 GGATTTCAAGACCGATCTG 57 9048107 9048125 ACGACAGTGATCGAATCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12081 FBgn0030053 FBtr0071218 2 1 1 73 X 8483593 8483614 GCAATAGTATGTACATCTTCGG 58 8483648 8483666 ATTAAGGGAATGCACATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nek2 FBgn0029970 FBtr0071142 2 1 1 60 X 7785278 7785297 TGCAATACTACCATCATCTG 57 7785237 7785257 CACTCCATAACAATGTACACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100214,FBtr0100208,FBtr0100200,FBtr0100215,FBtr0100217,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100201,FBtr0100206 2 11 15 63 X 6979981 6981658 CCATCCGGAATGGATACAG 59 6979936 6979954 AATCATTGTAACCACGACG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 2 12 15 238 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978622 6978640 ATTGATCTACCTCTGTGCA 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 1 12 15 238 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978622 6978640 ATTGATCTACCTCTGTGCA 57 NA DesignRelaxed Drosophila melanogaster 50 pod1 FBgn0029903 FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966 1 5 6 106 X 6701674 6702856 CAATTATTCCACGTTTGGGT 58 6702925 6702943 GATATTCTCGTGGGATCCC 58 NA Drosophila melanogaster 50 CG3168 FBgn0029896 FBtr0070986,FBtr0070985,FBtr0070984 1 3 3 89 X 6617448 6617466 CTTCTCGCAGACATACTCG 59 6616690 6616708 AAGTACGACCAGATCACAG 58 NA DesignNoJunction Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 1 8 8 166 X 6579447 6579465 ACAACGTCTTCCACTACAG 59 6579594 6579676 TGGAGAAGTCACATTGAAGG 59 NA Drosophila melanogaster 50 CG32755 FBgn0052755 FBtr0070862 2 1 1 115 X 5844917 5844935 ATTCATACCGTGGGAATCG 59 5845013 5845087 ATTTCTCCTTCATGGTGACC 59 NA Drosophila melanogaster 50 RpL35 FBgn0029785 FBtr0070800,FBtr0070801 2 2 2 112 X 5567097 5567116 CTCAAGAATGAGTTGCTCAG 58 5567273 5567291 ATCACAATGTAGACGCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 rap FBgn0003200 FBtr0070687,FBtr0070686 2 2 2 137 X 4568509 4568527 TACTGAAGAACGAGCTCCT 59 4563161 4568408 CATTGTAGTCCTGCTTGGT 59 NA Drosophila melanogaster 50 norpA FBgn0004625 FBtr0100671,FBtr0100670 3 2 4 108 X 4247551 4247569 GAACTGGATAAGCGATCCC 59 4247641 4247989 CATCTAGCCAGATCTTGGC 59 NA Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 3 13 13 81 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567131 2567221 CTGTATTGAGAGCTCATGCT 59 NA Drosophila melanogaster 50 CG14050 FBgn0040392 FBtr0070407 3 1 1 60 X 2218938 2218959 CAGTCCAGTTTCACATTAATCG 59 2218899 2218917 GTTTCCTCAAAGTGACCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14050 FBgn0040392 FBtr0070407 1 1 1 60 X 2219494 2219512 ACAAAGATGCAGTCAATCC 58 2219452 2219476 GTTGGATATAGAGGATACTTAGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp4d1 FBgn0005670 FBtr0070428,FBtr0070427 3 2 2 183 X 2053812 2053830 GAAGAAGTGCTTTGAGGAG 58 2053587 2053665 GAGCTTTCCATTGATCTCG 58 NA Drosophila melanogaster 50 csw FBgn0000382 FBtr0070378 3 1 3 102 X 1989340 1989358 CTACATGGAGAATGGCGAG 59 1989424 2002425 GCCATGAAACCATCTTTCC 59 NA Drosophila melanogaster 50 csw FBgn0000382 FBtr0070378 1 1 3 100 X 1989340 1989358 CTACATGGAGAATGGCGAG 59 1989421 2002423 CATGAAACCATCTTTCCGTG 59 NA Drosophila melanogaster 50 CG41534 FBgn0085674 FBtr0114122 1 1 1 60 U 8549856 8549876 GGCATATAAAGTGCGTTATCC 59 8549898 8549916 CGCTGATTCATGATTTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41579 FBgn0085705 FBtr0114154 1 1 1 60 U 6943939 6943957 TTTACTCCAAAGGACGTCG 59 6943977 6943999 CAACACTACCTATAGTACCTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40119 FBgn0058119 FBtr0113799 1 1 1 125 U 4790618 4790637 CCGAAATTTGCATAAACGGA 59 4796357 4796375 ATGTCATACCTGAACTCGT 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG11155 FBgn0039927 FBtr0089194 3 1 3 100 4 1153189 1154508 TATATCCTAGGGCAACCTC 57 1154571 1154590 TAGAAATGCAGCTAAGTTGG 57 NA Drosophila melanogaster 50 Pur-alpha FBgn0022361 FBtr0089993 3 1 4 189 4 580915 581004 TCTCAGGATCAAGGTTCCT 59 581350 581368 GACTTCGTCTACCATCAGC 59 NA Drosophila melanogaster 50 Asator FBgn0039908 FBtr0089108,FBtr0089109,FBtr0089107 1 3 3 80 4 499215 499234 TAACAAACTCCCAAGTAGCC 59 498700 499174 GCTTCGTATACTGTACATCCT 59 NA Drosophila melanogaster 50 dpr7 FBgn0053481 FBtr0113462,FBtr0113463 3 2 3 94 4 270593 270667 GTGATTTGGTATCATGGCT 57 270517 270535 CTCGTTGTTCCTACATCAG 57 NA Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450 3 8 8 168 4 157780 157853 TCGAGCAACCTTAAGACAC 59 158042 158061 CATAAACCAATTGCTTGCAG 58 NA DesignRelaxed Drosophila melanogaster 50 snoRNA:Psi18S-1377c FBgn0083049 FBtr0113596 3 1 1 74 3R 26033162 26033180 CCGTTCTTGTGTTATTCGC 59 26033106 26033124 ATTCGTTGCTTCAGTTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1815 FBgn0039863 FBtr0085822,FBtr0085823,FBtr0085824 3 3 3 81 3R 27501823 27501842 TGGTTCACAAATCTATCCCT 58 27501884 27502037 GAAGTAGTCGGTTATCTTGTG 58 NA Drosophila melanogaster 50 CDase FBgn0039774 FBtr0085649,FBtr0085647,FBtr0085646,FBtr0085648,FBtr0085645 2 5 5 81 3R 26289005 26289023 TCTGCTCTATGACATCTCC 57 26289067 26289145 TTTGATGCACAGATACAGTC 57 NA Drosophila melanogaster 50 Osi23 FBgn0039771 FBtr0085696 3 1 1 77 3R 26270014 26270094 AATGGCTTAAAGAGGGTGG 59 26269955 26269975 GTAACCTCCTAAATGTTCTCC 57 NA DesignRelaxed Drosophila melanogaster 50 sima FBgn0015542 FBtr0085565 3 1 2 82 3R 25935493 25935578 ATCACATCAAAGAGTCCCG 59 25935623 25935642 AAAGAGAAGTCATCCTCCTG 58 NA Drosophila melanogaster 50 CG7816 FBgn0039714 FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921 1 6 6 80 3R 25690544 25690624 GGGCGATAATCAAGATCCT 58 25690482 25690501 ATCGTGAAGATCAGTATGCC 59 NA Drosophila melanogaster 50 CG2310 FBgn0039665 FBtr0085434,FBtr0085433 2 2 2 170 3R 25317789 25317807 CAATAATGGCCGTCTACCA 59 25317637 25317655 AGTCCATGAAGTCGAAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cnx99A FBgn0015622 FBtr0110909,FBtr0085438,FBtr0085437 1 3 4 114 3R 25142527 25142547 CGATATTCTCTTCGACAACCT 59 25142079 25142451 GAATGAGTCCGATTCACGA 59 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085377 2 1 8 103 3R 24959596 24959614 TAAACCAAACGACCGAGTC 59 24959679 24960294 TGATTTCTCCATGTAACCGAG 59 NA Drosophila melanogaster 50 CG14519 FBgn0039619 FBtr0085340 2 1 1 126 3R 24817028 24817047 CTTTAATTGGTACAGTGCGC 59 24817136 24817154 TGTTGCAGATATAGCTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Doa FBgn0053553 FBtr0091524,FBtr0091526 3 2 9 127 3R 24746878 24746896 GTGCATCTTGTTCGAACTG 59 24746987 24747076 AAAGAGTATGATTGCGTGC 58 NA Drosophila melanogaster 50 CG14528 FBgn0039611 FBtr0085329 1 1 1 60 3R 24703037 24703055 ATCACGAGTACCAATACGG 58 24703079 24703097 ATGTTCTCTGACTGATCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS22 FBgn0039555 FBtr0085247 1 1 1 61 3R 23743111 23743129 GTATTCACGGACATCACCT 59 23743154 23743172 ATATCCCGGACGATTACCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5880 FBgn0039489 FBtr0085108 1 1 1 120 3R 22943140 22943158 TAGAAGCGGTTAGCATGTG 59 22943242 22943320 CAATTGTTGAGCCAAGGAC 59 NA Drosophila melanogaster 50 CG5484 FBgn0039450 FBtr0085037,FBtr0085039,FBtr0085038 1 3 3 88 3R 22544580 22544653 ATGCATAAGGATTGGTCCC 59 22544705 22544723 GTGGGCAGATAGAGATCTG 58 NA Drosophila melanogaster 50 beat-VII FBgn0039447 FBtr0085050,FBtr0085051 2 2 2 84 3R 22489332 22489350 TAACTCAACCATCGAGGGA 59 22489021 22489040 TAGATCGAACTGGACATCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG14354 FBgn0039376 FBtr0084905 1 1 1 82 3R 21641986 21642004 TATACCAACACGAGGAAGG 58 21642050 21642068 GATCTTCGGTCCCTTACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 XNP FBgn0039338 FBtr0084837 3 1 2 65 3R 21306131 21306149 TTGTCCTTACTGGTACACC 58 21305986 21306004 TCACAAACTGGATCATGCA 59 NA DesignNoJunction Drosophila melanogaster 50 bam FBgn0000158 FBtr0084869 2 1 1 131 3R 21069879 21069897 GAAATACGACGAGTGTGAC 58 21069705 21069784 TGAGTATGGAACTTGTCCG 58 NA Drosophila melanogaster 50 CG13663 FBgn0039291 FBtr0084873 3 1 1 60 3R 21040480 21040501 TATCTGCTGTTCTGGATAACTC 59 21040441 21040460 AAACCAATCCAAAGCTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11848 FBgn0039282 FBtr0084779 1 1 1 84 3R 20960784 20960875 GATCCGTACGAATGTACCC 59 20960923 20960941 GATCATCACTTGCACTTGG 58 NA Drosophila melanogaster 50 CG11920 FBgn0039274 FBtr0084769 2 1 1 60 3R 20901485 20901505 GATGAACAGAGGAAACTACCA 59 20901527 20901545 TACATTATTGGCACGACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11790 FBgn0039265 FBtr0084760,FBtr0084761 1 2 2 89 3R 20874456 20874474 TGAGAAGGGATATACCCAG 57 20875008 20875026 AAATAACTTTGCAGTGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5762 FBgn0039190 FBtr0084627 2 1 1 61 3R 20186935 20186953 TAATTTCCCGGACAGTGTG 59 20186892 20186910 CCATCGACTCCAGAAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13611 FBgn0039177 FBtr0084600 2 1 1 89 3R 20105967 20106386 ATTGACTTCTACTTCACCTACC 59 20106436 20106454 GATAAATTGCAGCTGCTCC 59 NA Drosophila melanogaster 50 spas FBgn0039141 FBtr0084533,FBtr0084534 1 2 2 68 3R 19866502 19866520 AATGGTCATTCTACCCTCC 58 19866610 19866628 AATAAACCCTTAGCCGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5902 FBgn0039136 FBtr0084501,FBtr0084502 2 2 2 80 3R 19812868 19812886 GAATCACAGGCTAGAGGTC 59 19812929 19813004 GTCCTCTAATCGTCTTCTGC 59 NA InUTR Drosophila melanogaster 50 rumi FBgn0086253 FBtr0084320 2 1 1 60 3R 18575471 18575492 CGAACGTGATTCTCTTATTCTG 59 18575432 18575450 GTATTGAGCCTCGACTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wfs1 FBgn0039003 FBtr0084334 3 1 2 93 3R 18515859 18515877 AACTTAAGCATCACATCGC 58 18515727 18515803 AGATTGGGCTCTACTATGGA 59 NA Drosophila melanogaster 50 CG33092 FBgn0053092 FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144 1 7 7 268 3R 17705102 17705177 AGGACTTTCGGGATTTGTG 59 17705407 17705427 AGGTACCAGTGAAGTTAATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG33092 FBgn0053092 FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144 3 7 7 268 3R 17705102 17705177 AGGACTTTCGGGATTTGTG 59 17705407 17705427 AGGTACCAGTGAAGTTAATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13420 FBgn0038900 FBtr0084130 1 1 1 62 3R 17594518 17594536 ATCTCTGGTACGGAAAGTG 58 17594562 17594580 ATTCTCCTCGTACATACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31198 FBgn0051198 FBtr0084128 2 1 1 82 3R 17581768 17581786 TCATCCGTATGATCAAGCA 58 17581829 17581909 CTGATACTCGTATTTCTTCAGG 58 NA Drosophila melanogaster 50 Oamb FBgn0024944 FBtr0083932,FBtr0083933,FBtr0083934 1 3 3 90 3R 16526375 16526393 ATTGTCAACCTAGCTGTGG 59 16526041 16526324 CGAATATCCAAACCTTGAAGAC 59 NA Drosophila melanogaster 50 Pi3K92E FBgn0015279 FBtr0083940,FBtr0083941 2 2 2 84 3R 16457025 16457246 GCTTACACTTTCTGAAAGACG 59 16456961 16456979 CTTTCCAGGTACGATTCGT 59 NA Drosophila melanogaster 50 Srp72 FBgn0038810 FBtr0083911 3 1 1 247 3R 16416254 16416272 AAGACTGCCAATACCAAGG 59 16416483 16416559 GACATGTCGTATTGATCGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG3581 FBgn0038697 FBtr0083775 2 1 1 71 3R 15200058 15200076 AATTTCAGGAGAAGGTCGC 59 15200005 15200023 AGATGTACTGATGCTTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dl FBgn0000463 FBtr0083740,FBtr0083739 3 2 2 74 3R 15137560 15137578 TATCTGTTTGACCGGATGG 59 15134450 15134468 CAATGTCCATGTTCACAGC 59 NA DesignNoJunction Drosophila melanogaster 50 sqz FBgn0010768 FBtr0083733 2 1 1 168 3R 14993955 14993973 CAACAGCAAATGGTCATGG 59 14994105 14994303 GATTCGGGTCGTACTTCTG 59 NA Drosophila melanogaster 50 osa FBgn0003013 FBtr0089581,FBtr0089582,FBtr0089583 1 3 3 108 3R 13533850 13533868 TCTCAATATTCGCCGTACC 59 13533696 13533778 GATTCGGTTCGGGATACTG 59 NA Drosophila melanogaster 50 CG14891 FBgn0038445 FBtr0083301 3 1 2 60 3R 12397519 12397538 TCTTTATTTACAGGCCAGCA 59 12397561 12397579 AAGAGTTCCTGATTCCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gyc-89Da FBgn0038435 FBtr0110963,FBtr0110962 1 2 2 60 3R 12299781 12299800 CTTCACATTTGTGCTGAACC 59 12299823 12299841 CTCAACGATCTTCTCACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6126 FBgn0038407 FBtr0083278 1 1 1 209 3R 12025092 12025110 TTCTCATTCATGGTGGCTC 59 12024839 12024857 GTAGATCACTTGGAGCCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8925 FBgn0038404 FBtr0083253 1 1 2 95 3R 12000208 12003269 TCTACGTGTTCCAGATTGC 59 12003328 12003346 ACTGACTAATATTGCGCCA 59 NA Drosophila melanogaster 50 CG34276 FBgn0085305 FBtr0112471 2 1 1 91 3R 11752005 11752023 TCTGCAGCAGAGTTATTCG 59 11752148 11752166 AGTTGTAGAACCAATTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9593 FBgn0038365 FBtr0083178 1 1 1 103 3R 11628447 11628467 CCTTACCAAAGGAACTTACTG 58 11628604 11628622 AAACCTATAGACGCCATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6118 FBgn0038339 FBtr0113240,FBtr0113239 2 2 2 93 3R 11249454 11249474 AGGTGAATGTCAAGTATGAGG 59 11249255 11249399 CTGTCCAGGTTCTTCTCTG 59 NA Drosophila melanogaster 50 CG7530 FBgn0038256 FBtr0083020,FBtr0083021,FBtr0083019 3 3 3 167 3R 10551641 10551769 ATGAGACGATCAACATCTGG 59 10551493 10551511 GGTATATGGCGGACATCAG 59 NA Drosophila melanogaster 50 CG31320 FBgn0051320 FBtr0082943 1 1 1 60 3R 10184973 10184991 GAATGTAGAACGTGAGTCC 57 10184931 10184950 TTCCACAATCTGAGATACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34383 FBgn0085412 FBtr0112621 1 1 4 173 3R 9585737 9585824 ATACCTGAAACACTGTCGC 59 9586026 9586044 GATTTGGTTGAGTTGCAGC 59 NA Drosophila melanogaster 50 CG9611 FBgn0028487 FBtr0112937,FBtr0112938 3 2 5 138 3R 9522483 9522559 TTTCCGGATAGCTTTCACC 59 9522363 9522381 TCTGGCGATCATATTCCTG 58 NA Drosophila melanogaster 50 desat1 FBgn0086687 FBtr0082630,FBtr0082628,FBtr0082627,FBtr0082626,FBtr0082629 2 5 5 108 3R 8272013 8272031 TCCAATCCTCATGTTCCAG 58 8272164 8272182 GTTCATGAAGGATTCACCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10041 FBgn0038014 FBtr0082613 3 1 1 60 3R 8177550 8177568 TTTCGAATGAGTTCGTGCT 59 8177508 8177526 AGTTGTTTGGTTGGATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6971 FBgn0037962 FBtr0082514 2 1 1 60 3R 7718291 7718312 ACTCTTGAACTAGACAAAGAGG 59 7718252 7718273 CCTGCTTAAGTTTCATATCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31368 FBgn0051368 FBtr0082477 1 1 2 80 3R 7717450 7717470 ATATGTATTTGGCAGGGTCTC 59 7717510 7717598 CTCAACTTCAAAGGTCTAAGC 58 NA Drosophila melanogaster 50 CG31391 FBgn0051391 FBtr0082321 2 1 1 60 3R 6530462 6530481 GGTGCTAAGAGATATTCGAG 57 6530421 6530442 GTAGGTTAGAAAGTCTTTAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31406 FBgn0051406 FBtr0082236 2 1 2 273 3R 6175179 6175197 ACGCACAAGAATCTATCGA 58 6175612 6175630 TATTCGGCTTGATGTTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG31410 FBgn0051410 FBtr0082175 2 1 1 152 3R 5879814 5879832 CTTCTATGTGGAGCCTTCG 59 5879947 5879966 CAGTCCAACAGATATCCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8478 FBgn0037746 FBtr0082133,FBtr0082132 1 2 2 94 3R 5590340 5590415 TAACTGAAGTATCCAACGAAGG 59 5590470 5590488 GACTTCGTTCACTACCTCG 59 NA Drosophila melanogaster 50 CG31415 FBgn0051415 FBtr0082127 3 1 1 185 3R 5569823 5569841 GAAGTCTACCACCTCAGAG 58 5569990 5570008 ATTTATTGCACTGCTGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7352 FBgn0037581 FBtr0081842 2 1 1 60 3R 4174172 4174190 CCAGGAACTCAGAGAATGG 59 4174212 4174232 CTGGACTAAGTCACTCAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dsx FBgn0000504 FBtr0081760,FBtr0081761 1 2 3 60 3R 3761506 3761524 CAACATTGAAGAGGCTTCC 58 3761350 3761368 GGAGTACTCATTCACAACG 57 NA DesignNoJunction Drosophila melanogaster 50 CG17816 FBgn0037525 FBtr0113203 1 1 3 152 3R 3691470 3693768 GAAAGAAGCTACTCTACATGAG 58 3691069 3691087 GTGATGAAGTGGTTTAGGC 58 NA Drosophila melanogaster 50 CG2616 FBgn0037512 FBtr0081738 3 1 1 60 3R 3548863 3548882 TATGAACAGTTCAAGGCCAG 59 3548901 3548923 CCTGACTCTTATTATAGTGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pb FBgn0051481 FBtr0089278 1 1 4 136 3R 2537663 2565280 ACAATCAGGCTGAATTCGT 59 2537545 2537563 TATCTCGATCCTCCTTGGG 59 NA Drosophila melanogaster 50 Ccp84Ag FBgn0004777 FBtr0081689 1 1 1 162 3R 2512833 2512851 GTACACCTACGGCTATGAC 59 2512977 2512995 GTTGAATCCGTTGATGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 agt FBgn0024912 FBtr0081697 2 1 1 60 3R 2485454 2485474 GATAAACTGTTCGAAAGCGAC 59 2485414 2485432 TTCCATAGATGGCAATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31563 FBgn0051563 FBtr0078586 2 1 1 61 3R 1979210 1979228 GGTGACAAAGTGAGTTGTG 58 1979253 1979271 ACAAATTGGAGTTGCTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34122 FBgn0083958 FBtr0110829 3 1 1 130 3R 1513866 1513885 AAATAGCACCCAGATAACCG 59 1515641 1515659 TCCATTCAACCAAGAAGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG1109 FBgn0046222 FBtr0078713,FBtr0078714 1 2 2 84 3R 1487666 1487684 GTTAAGTACTGGCAGTCCA 58 1487731 1488795 TGGGACTGAAACTTATTCCC 59 NA Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078809,FBtr0078810,FBtr0100199 1 9 15 151 3R 1119084 1119795 AGTATTCTCAAGACGTTCCTC 59 1118953 1118971 TAAAGAGTTCCGGCTTGTC 59 NA Drosophila melanogaster 50 CG31523 FBgn0051523 FBtr0078938,FBtr0078935,FBtr0078936,FBtr0078937 3 4 4 93 3R 293416 293435 TTTCTACTACATGATCGCCG 59 293283 293361 CACGAATTGAACCATTTGGA 59 NA Drosophila melanogaster 50 Snap25 FBgn0011288 FBtr0111143 2 1 2 173 3L 24154271 24203130 ATCAAGGAGAACAACTGGA 58 24246920 24246939 CATCATTTCCTTTCCAGGTC 58 NA Drosophila melanogaster 50 CG40470 FBgn0058470 FBtr0111152 3 1 1 93 3L 23928213 23967707 TGGATTAGAGGCGTTTGTC 59 23928138 23928157 GACTTCATAGCTTAGAGGCA 58 NA Drosophila melanogaster 50 CG17698 FBgn0040056 FBtr0111168,FBtr0111167 3 2 3 163 3L 23734173 23739296 CAAATTGGACAGGGATCCT 59 23739420 23739441 CTGTAAACTCGATCTAGAGGTG 59 NA Drosophila melanogaster 50 Mes2 FBgn0037207 FBtr0078563,FBtr0078562 1 2 3 88 3L 22939124 22939142 AGTCGAAAGTCGATACGTC 59 22939194 22939212 ATTGCACATAGGGTGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11137 FBgn0037199 FBtr0078577 2 1 1 106 3L 22861085 22861103 CAATCCATCTGCTTTGGTG 59 22860945 22861018 TCATGGGAATGTTCTTAAGAGG 59 NA Drosophila melanogaster 50 eg FBgn0000560 FBtr0078437,FBtr0078438 2 2 2 98 3L 21807935 21807953 ATTTACATGTGAAGGCTGC 58 21809436 21809454 TTGTTGATCACGCAATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11247 FBgn0037120 FBtr0113184,FBtr0078459,FBtr0078458 1 3 3 149 3L 21718589 21718666 TATCAGTGTAGGATCTGCC 57 21718458 21718476 CATGTGGTTCTTTAGGTGC 58 NA Drosophila melanogaster 50 CG32441 FBgn0052441 FBtr0078375,FBtr0078376 1 2 2 68 3L 21568000 21568333 GACTTGCTGAAGAAACTGG 58 21568365 21568383 ATTTGAATACACCACCGTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG10512 FBgn0037057 FBtr0078297,FBtr0078300,FBtr0078298 2 3 4 297 3L 21199477 21199495 GATGCCATTAGGAGGATCC 59 21200565 21200583 CTTCTTCTCCTTGTCTCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG5969 FBgn0036998 FBtr0078198 3 1 1 84 3L 20467169 20467187 TCTACTGCATGCTTATCGT 58 20467235 20467253 GAAATGTCGAGGAACTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fln FBgn0005633 FBtr0074910 1 1 1 89 3L 19983177 19983257 GAATATCAGTGGCAGTGAC 57 19983106 19983124 TAAGTTCTTATCGAGGCCG 58 NA Nonspecific Drosophila melanogaster 50 CG14100 FBgn0036889 FBtr0074971 3 1 1 61 3L 19582410 19582428 TTGGAGGTAAGGGAAAGTG 58 19582367 19582386 CACATTCAAGCTATCGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075006,FBtr0075013 2 2 11 81 3L 19302864 19302882 ATATACCGCGTTATTTCCG 57 19302745 19302763 ACATTGTTGCGATTCACTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10424 FBgn0036848 FBtr0075033 2 1 1 65 3L 19090177 19090195 AATCTGATCTGTGGACAGC 59 19090130 19090148 AAACAGTCTCTGGAACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6852 FBgn0036820 FBtr0114591,FBtr0075063 3 2 2 79 3L 18862635 18862653 AATAGTCGACATGTCCACC 59 18862696 18862714 TCTTGCTGAATATCACCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AlCR2 FBgn0036789 FBtr0100242,FBtr0089387 2 2 2 130 3L 18480555 18480573 TCCACACTGGATTTCACAG 59 18480230 18480248 ACAGTATTGGGTTCATGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7510 FBgn0036741 FBtr0075182 3 1 1 80 3L 17621049 17621067 AATCCGAGCTTTCAGTACG 59 17621110 17621389 GCCAACGGTTACTATAAAGC 58 NA Drosophila melanogaster 50 CG7603 FBgn0036726 FBtr0075220 2 1 1 160 3L 17459182 17459200 GCAATAGACTGTCACTCTC 57 17459386 17459404 CTTGATGTCGTTGTACAGC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 noe FBgn0026197 FBtr0110845 1 1 2 153 3L 17393606 17393624 CCATAGAGACGTTTAAGGC 57 17393471 17393489 GTGTTGTGTCGTAATTTGC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Exn FBgn0027593 FBtr0075271,FBtr0075273,FBtr0075272 3 3 3 191 3L 16983971 16984124 CATTCGTAGATGACTCAGAC 57 16984278 16984296 AATCATCCGAAATGACCAC 57 NA Drosophila melanogaster 50 Nrt FBgn0004108 FBtr0075323,FBtr0075322 1 2 2 216 3L 16767347 16767365 AGGACGAACAGAAATCTCG 59 16767608 16767626 ATCATGTTAGCGATTGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 zetaCOP FBgn0040512 FBtr0075352,FBtr0075353,FBtr0075351 2 3 3 112 3L 16666237 16666255 TTCCATTAGCCTGATCCTC 58 16665631 16666161 CATCCAGAATAATGCCTCC 57 NA Drosophila melanogaster 50 CG4573 FBgn0036629 FBtr0075411 1 1 1 86 3L 16409017 16409036 TTTGTCTGGGAATGAGAGTC 59 16408890 16408968 TCTAAGTTGGAGTGTTGCG 59 NA Drosophila melanogaster 50 retinin FBgn0040074 FBtr0075375 2 1 1 158 3L 16325341 16325359 AAGATCAATCCCAGGAGGA 59 16325481 16325499 TCAATACGGTTCGTAGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13073 FBgn0036577 FBtr0075486,FBtr0075485 2 2 2 68 3L 16206247 16206267 TTCATACTGTACACGGAAGTC 59 16206199 16206217 CTTCGAATGGAAATCGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 comm2 FBgn0041160 FBtr0075580 3 1 1 60 3L 15692583 15692604 GTGATTTCCTGAAACAGATTGG 59 15692544 15692562 TGCTGATGTTTCAGTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10006 FBgn0036461 FBtr0075628,FBtr0113171 3 2 2 90 3L 14989464 14989484 CAGATCGATAATGGAGTTTGC 59 14989536 14989611 CATAGATCCAAGCGTACCA 58 NA Drosophila melanogaster 50 Brd FBgn0000216 FBtr0075621 3 1 1 214 3L 14965850 14965868 AACTCTGATGAACACCACC 59 14966046 14966064 CTTCCAATTGCTCGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ome FBgn0002997 FBtr0112816 3 1 2 196 3L 14733239 14737298 GCGGTTCAAGAATCTAATGC 59 14737457 14737475 GACCACTTAGCACATCCTC 59 NA Drosophila melanogaster 50 CG6650 FBgn0036402 FBtr0075769 1 1 1 80 3L 14025984 14026061 CACATGTCTAGAAAGCTGC 58 14026105 14026123 ATGGATGTCATCGTTTGGA 58 NA Drosophila melanogaster 50 CG14110 FBgn0036352 FBtr0075844 2 1 1 60 3L 13378377 13378395 CGAGATGGTGATCTACAGG 58 13378419 13378437 GATAACCCTGATCCGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32115 FBgn0052115 FBtr0075904 3 1 1 60 3L 12906489 12906508 TATCCTTAATTTCGCTACCG 57 12906448 12906467 TATATCCCAGTCCCTAACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10960 FBgn0036316 FBtr0075942,FBtr0075943,FBtr0075941 1 3 3 133 3L 12820168 12820186 GTATCCTGTTCGTCTATGC 57 12819719 12820071 TTTGGAAACCAAGTAGGTG 57 NA Drosophila melanogaster 50 Ncc69 FBgn0036279 FBtr0075987,FBtr0075988 2 2 2 92 3L 12362374 12363044 AAATTGAGAGTTTACGCGC 59 12362300 12362318 ATCGATCCGGAATTTCGAC 59 NA Drosophila melanogaster 50 CycA FBgn0000404 FBtr0076075,FBtr0076076 1 2 2 80 3L 11821209 11821298 ACATGACGCTGTATATTTCC 57 11821148 11821166 CGGATGACATAAGTGATGG 57 NA Drosophila melanogaster 50 CG32086 FBgn0052086 FBtr0076147 3 1 1 89 3L 11576401 11576420 CAAGTGGACTTTATGGATCG 58 11576280 11576298 AACACCGAAAGTTATGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11726 FBgn0036156 FBtr0076172 1 1 1 60 3L 11388199 11388217 TCCGTTCTCTAACCATTCC 58 11388240 11388259 ATTTCCACATACGCAAATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34012 FBgn0054012 FBtr0100067 2 1 1 103 3L 11102163 11102256 GCTAGTGCCTATGATTAACAC 58 11102080 11102098 ATGGACTCTCCATGAAGAG 58 NA Drosophila melanogaster 50 CG8003 FBgn0036096 FBtr0076260 2 1 1 76 3L 10655708 10655786 GATGAGGTGGATTACGGAC 59 10655826 10655844 ACTTGGAGCACTTCTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32062 FBgn0052062 FBtr0113419,FBtr0113420,FBtr0113418 3 3 5 121 3L 10561593 10561611 CAGAATATTCAAGTGGCGG 58 10561696 10566558 TACTGTGGACTTCTGTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG8336 FBgn0036020 FBtr0076384,FBtr0076386,FBtr0076385 3 3 3 127 3L 9624224 9624296 CTCGACAAGTTCACAGGAG 59 9624387 9624405 TAGTATCGATTCGCCTTGC 59 NA Drosophila melanogaster 50 CG33702 FBgn0053702 FBtr0091690 2 1 1 60 3L 9506006 9506024 CTTTCAACGATAAGACGCT 57 9505964 9505983 AGTTTGTATTCACCAACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsp27 FBgn0001226 FBtr0076454 2 1 1 178 3L 9377320 9377338 AGTTGGATCATGACTACCG 58 9377480 9377498 TGACATTTGATTGTGGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 orb2 FBgn0035938 FBtr0076563,FBtr0076561,FBtr0076564,FBtr0076562 1 4 4 60 3L 8936365 8936386 ATCATGGATAGATTGTACGGTG 59 8936326 8936344 TTAATTCCGGATCGGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32352 FBgn0052352 FBtr0076628,FBtr0076629,FBtr0076630 2 3 3 163 3L 8581770 8581788 ATCAAGAAGGAAGCTTCCC 59 8581913 8586581 TCGTATTCATGATCACTCTCG 59 NA Drosophila melanogaster 50 CG8005 FBgn0035854 FBtr0076695 3 1 1 61 3L 8192047 8192066 AAGATTATTCATCGGTTGGG 57 8192090 8192108 GCAGCCCAATAGTAAATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8111 FBgn0035825 FBtr0076770 2 1 1 60 3L 7907685 7907703 CACCTACTATTACACGCGG 59 7907643 7907661 GTTGTAGAAGTTTCGCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32387 FBgn0052387 FBtr0076920,FBtr0110848 1 2 3 93 3L 7157941 7158034 TACAGACACAAGCAAAGTC 57 7157866 7157884 GAATGGTGGCATAATACCG 58 NA Drosophila melanogaster 50 CG10103 FBgn0035715 FBtr0076949 2 1 1 109 3L 6748216 6748530 ACTTTATCGATCGTGAAGC 57 6747860 6747878 ATTAATGGAGGTGTAACGC 57 NA Drosophila melanogaster 50 zpg FBgn0024177 FBtr0076983 3 1 1 98 3L 6598425 6598444 TTACAAAGAGACCCACTTCC 59 6598274 6598292 AATACGTCCAACAGAAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 Cpr65Av FBgn0052405 FBtr0077024 3 1 1 74 3L 6132845 6132866 CATACTAAGATACGACAACGAC 58 6132682 6132701 GTAACTCCATCACTGGTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6596 FBgn0035671 FBtr0077045 3 1 1 60 3L 6059803 6059823 TGGACTTTGATGACATACTCC 59 6059843 6059863 AACAGTAGCTTCTGATATCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jon65Aiii FBgn0035665 FBtr0077041 3 1 1 60 3L 6044358 6044379 CCTTATTAACAAGGTTGAGCTG 59 6044400 6044418 CTGTCCAGTGTAAGTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PGRP-LD FBgn0035635 FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577 1 4 4 107 3L 5775936 5776021 TGCATAAGCTGGAAAGGTC 59 5776092 5776110 GATACTGGCTCCGATAGTG 59 NA Nonspecific Drosophila melanogaster 50 CG15212 FBgn0040842 FBtr0077163 2 1 1 81 3L 5124921 5124941 TGATCGGCGATAATATCTACC 59 5124984 5125002 TTCTTCAGCTTGAAGATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dhc64C FBgn0010349 FBtr0073360 3 1 2 142 3L 4813436 4813454 AAGAAGATTCAGTCGCAGG 59 4813074 4813330 TTAATCGAGCTAACGGCTG 59 NA Drosophila melanogaster 50 Fit1 FBgn0035498 FBtr0073209,FBtr0073210 3 2 2 60 3L 4105483 4105501 ATTCCTCAAGCCTCAAAGG 59 4105524 4105543 CCTGTAGGTGAAGAAGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12006 FBgn0035464 FBtr0073150,FBtr0073149 2 2 2 83 3L 3812981 3812999 AATACAGAGATGAACGCGA 58 3813043 3813127 GGTGAATGTGACTATAGTATGG 57 NA Drosophila melanogaster 50 RpL28 FBgn0035422 FBtr0073097,FBtr0073095,FBtr0073096,FBtr0073098 3 4 4 87 3L 3221935 3221954 CAATTGGTTGATCATTCGCA 59 3221695 3221885 CAAGTTGTTTGGCTCTGTG 59 NA Nonspecific Drosophila melanogaster 50 CG12734 FBgn0035411 FBtr0073036,FBtr0073035 2 2 2 140 3L 3183013 3183031 TACAAGATGGTACGCATGG 59 3183134 3183208 TATCAACATCTCACAACGCT 59 NA Drosophila melanogaster 50 Acp62F FBgn0020509 FBtr0072943 2 1 1 77 3L 2739995 2740013 ATCAATGAGAGGATTCCGG 58 2740052 2740072 CAGTAGCATATCTTCCTTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 obst-I FBgn0052304 FBtr0072880 1 1 1 60 3L 2268005 2268023 AACGAAACTATCCAAGCCT 58 2268046 2268065 CGATTTGGTGATTGGTACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32308 FBgn0052308 FBtr0113432 3 1 2 122 3L 2037607 2037625 GAGGAACACCATCGTAGAC 59 2037448 2037466 TTCTTGAGAAAGCTCTCCC 58 NA DesignNoJunction Drosophila melanogaster 50 mu2 FBgn0002872 FBtr0072856 1 1 2 112 3L 1945586 1945661 CAAAGTTGCATCAGATTCGA 58 1945493 1945511 CCTCATTGGGACTTACAGG 59 NA Drosophila melanogaster 50 R FBgn0004636 FBtr0072867 3 1 1 165 3L 1861083 1861101 GGACAGTTACAGGAAGCAG 59 1860936 1860954 ATCGTTAAACGTCGATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Psa FBgn0035226 FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697 2 6 6 114 3L 1520666 1520684 TGAGACCTTTGTGCTAGTG 59 1520761 1521150 CATAGTTACCAGATTGCCGA 59 NA Drosophila melanogaster 50 SA-2 FBgn0043865 FBtr0113348,FBtr0072715 3 2 2 146 3L 1434913 1434995 TACGTAAAGTACCACGCTC 59 1434785 1434803 ATGACGAGTATCATCTGGG 58 NA Drosophila melanogaster 50 CG9205 FBgn0035181 FBtr0072621,FBtr0072622 1 2 2 236 3L 1035939 1036032 GTTTCTCACGGAACAATGC 59 1036232 1036250 CTGGAGACTATCCTTGCAG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 nerfin-1 FBgn0028999 FBtr0072592 3 1 1 91 3L 910150 910168 AAGCAGTTCAATTGTCCTG 58 910223 910241 GTGGTATTGCGATTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32845 FBgn0052845 FBtr0072518 3 1 1 60 3L 272465 272483 TATGTCTAGTTGTTCGGGT 57 272423 272441 CTCAGACACAGAAGTCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA-Psi:CR33363 FBgn0053363 FBtr0086355 1 1 1 62 2R 15650036 15650054 AATACATCGGTTCTCGTCC 59 15649992 15650010 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33387 FBgn0053387 FBtr0086379 1 1 1 62 2R 15641158 15641176 AATACATCGGTTCTCGTCC 59 15641114 15641132 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 gol FBgn0004919 FBtr0072460,FBtr0072459 1 2 2 73 2R 20962926 20962944 ACACCATACGGATATTGCC 59 20962813 20962831 TCGATGCTCTATAAGCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 pio FBgn0020521 FBtr0072312 1 1 2 101 2R 20479690 20479767 GAGTACAGAGATCATGTGGG 59 20483388 20483407 GTTGAAGAACTCAATGCCAC 59 NA Drosophila melanogaster 50 CG3803 FBgn0034938 FBtr0072208 2 1 1 60 2R 19840973 19840991 CAATACCCAGAGTACAAGC 57 19840873 19840892 AAATGAACTTGAACTCCTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG13562 FBgn0034928 FBtr0072135 1 1 1 99 2R 19792039 19792058 GCTATATGTTTGGCTTCAGC 59 19792120 19792195 ATATCGCACGTGTCTATGC 59 NA Drosophila melanogaster 50 Upf3 FBgn0034923 FBtr0072222,FBtr0072221 3 2 2 61 2R 19781275 19781293 CAAAGTCCATGGACATCGT 59 19781232 19781252 CAAACTCTCGTTTGATTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17280 FBgn0034877 FBtr0072061 3 1 1 224 2R 19435822 19435841 ATTCTAAACCACGCAATTCG 59 19436179 19436197 CAGGTAGTCGTACTTGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9815 FBgn0034861 FBtr0113111,FBtr0072024 1 2 2 190 2R 19309400 19309471 GATTCCAATTTCGACGCTG 59 19309228 19309246 AAGATTACGCCATCTCCTC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Gr59c FBgn0041235 FBtr0071977 2 1 1 60 2R 18990427 18990447 CTCCATCTACTTTAGCGTCTG 59 18990387 18990406 GTATGTAGAGCCGAATCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9897 FBgn0034807 FBtr0071989 2 1 1 60 2R 18873094 18873114 CCGATGTCTATGCAAATATCC 58 18873054 18873074 TAATCCTTCGTATTCGAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3499 FBgn0034792 FBtr0071906 2 1 1 81 2R 18772306 18772439 TATCTGAAGACTATCGTCGT 57 18772244 18772263 GAAATACGGATCCATTGGAG 58 NA Drosophila melanogaster 50 CG30266 FBgn0050266 FBtr0071887 2 1 1 127 2R 18711274 18711292 GCAAAGAACGACATATCGC 59 18711436 18711456 CCGTCATTATCCGTAATTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34208 FBgn0085237 FBtr0112401 2 1 1 121 2R 18220670 18220688 GTTTGTTCCTGGTATTCGG 58 18220773 18220791 GTTATCGTTTCGAGGACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GM130 FBgn0034697 FBtr0071789,FBtr0071790 2 2 2 131 2R 18013744 18013762 TAAAGAGGCCAGTCAAGTG 59 18013576 18013594 ATCTTCAGCTGGAATTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG10433 FBgn0034638 FBtr0071691 2 1 2 169 2R 17494114 17494195 AGTTACTACATGCTGCAGG 59 17493856 17493981 TTTGATCGGAGTTCGTAGC 59 NA Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708 3 9 9 94 2R 17398737 17398915 TTTGCCAGAGGATTACGTC 59 17398972 17398991 AACCAATCACCGACTTTAGG 59 NA Drosophila melanogaster 50 RpL29 FBgn0016726 FBtr0071593,FBtr0071594,FBtr0071592 1 3 3 136 2R 17181657 17181744 CACTCTGGGTATGGATGTG 59 17181844 17181862 ACAGAGTAACAGGCTTTGG 59 NA Drosophila melanogaster 50 Hil FBgn0050147 FBtr0086256,FBtr0086255 2 2 2 96 2R 16502072 16502090 GCTTCAAATGCGTACACTG 59 16500960 16502013 TGTGAACTGCAATAGACCTC 59 NA Drosophila melanogaster 50 CG11788 FBgn0034495 FBtr0086277 2 1 1 86 2R 16163355 16163374 CAATATAAGCGATCGCATGC 59 16163421 16163499 GTAAAGCACTCTATGTACGGT 59 NA Drosophila melanogaster 50 CG7744 FBgn0034447 FBtr0086535 2 1 1 81 2R 15341638 15341657 TTGTTATGGAGTGGGTATGC 59 15341699 15341770 AACTTCCCACCAGTATAAAGG 59 NA Drosophila melanogaster 50 CG15117 FBgn0034417 FBtr0086594,FBtr0100129,FBtr0086593 2 3 3 113 2R 15010499 15010517 AACCCAGAATGTGATCGAC 59 15010305 15010422 TAAGCAGGTTGCATATGCA 59 NA Drosophila melanogaster 50 CG10924 FBgn0034356 FBtr0086699,FBtr0113093 3 2 2 60 2R 14421136 14421156 GGATGAAGTTCGATAACAAGG 58 14421178 14421196 CCAAAGAATCCATTCTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 3 8 8 99 2R 14032395 14032483 AGGAAAGAATTCTGAGAAGC 57 14032544 14032563 CTCAATCATCGGATACAGAC 57 NA Drosophila melanogaster 50 Pkc53E FBgn0003091 FBtr0112819,FBtr0087048 1 2 3 145 2R 12814305 12815641 TTTATCTGCGGCTATCAGTC 59 12818764 12818782 GAATCGATGCCCTTATCCT 58 NA Drosophila melanogaster 50 Hmgs FBgn0010611 FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146 2 5 5 60 2R 12227690 12227709 CAGAAGGATACTTCCAAGCA 59 12227731 12227750 TGTGGAATAGGATAGCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12963 FBgn0034031 FBtr0113082,FBtr0087337,FBtr0113083,FBtr0087338 2 4 4 124 2R 11449472 11449490 ATGTGTAACCTGACCACTC 58 11449578 11449596 GGATCTGTCTCCGAATACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SRPK FBgn0026370 FBtr0087384,FBtr0087383 3 2 3 95 2R 11269909 11270916 CTGTTTCATGATCGCTACC 58 11270975 11270993 CACATATCCCATTGCTTGC 59 NA Drosophila melanogaster 50 Pms2 FBgn0011660 FBtr0087388 3 1 1 101 2R 11257149 11257167 CAAGTGATGTTGACATGGC 59 11257004 11257085 GATCATAAGCCTCAGACTCC 59 NA Drosophila melanogaster 50 pcs FBgn0033988 FBtr0087412 3 1 1 99 2R 10877274 10877292 AAGGCTAGACCCTACTACG 59 10877354 10877436 CATGGATTTCATTAGCTCGC 59 NA Drosophila melanogaster 50 AttB FBgn0041581 FBtr0087438 3 1 1 93 2R 10636772 10636790 AGCATCCTTATCTTGGCAC 59 10636847 10636865 CTAAGGAACCTCCAAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13323 FBgn0033788 FBtr0087797 3 1 1 83 2R 8934575 8934594 CGATCAAGAACAACTACTGG 58 8934511 8934529 AGTTGTCGTAGACGATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sug FBgn0033782 FBtr0087789 3 1 1 80 2R 8817355 8817373 AGACGGACTCTACTATTGC 58 8817417 8817435 TGGACAAGCATCTTGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12488 FBgn0033772 FBtr0087851 3 1 1 88 2R 8636959 8637039 AGCAGAAGATTGTCTACTCC 58 8637089 8637108 ATTCGAACGGATGTTAACCA 59 NA Drosophila melanogaster 50 CG33632 FBgn0053632 FBtr0091609 3 1 1 92 2R 8409949 8409967 GAAATCCCAATCCGATTGC 59 8410020 8410093 GCACAAGATCATGGTTATAAGG 59 NA InUTR Drosophila melanogaster 50 fdl FBgn0045063 FBtr0087946,FBtr0087947 2 2 2 131 2R 8376192 8376277 GAAAGAAGCAGGTACTGGG 59 8376079 8376098 GATCATCGCTAGGATCAGTC 59 NA Drosophila melanogaster 50 Oda FBgn0014184 FBtr0088015,FBtr0088013,FBtr0088014 2 3 3 284 2R 8055514 8055532 AGAACAGATCACGATAGGG 58 8055182 8055203 CAGAATCGTATTCCAATTGGTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12341 FBgn0033550 FBtr0088251 2 1 1 77 2R 6699991 6700009 CATAATCAGCAGTGCAGTC 58 6699932 6699950 CAGATCATGGCGTATATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 3 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421093 TAGTAAGGTAGCAAAGTAGGGA 59 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 3 9 9 198 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349188 6349206 CTTAGTACAGTCCACAGCC 59 NA DesignRelaxed Drosophila melanogaster 50 Cyp4p1 FBgn0015037 FBtr0088592 2 1 1 95 2R 5128336 5128420 ACAGTATTTGTGAAACCGC 58 5128478 5128497 AGCATTCTTCAATCTGACTG 57 NA Drosophila melanogaster 50 CG18659 FBgn0027561 FBtr0088626 2 1 2 84 2R 5013711 5014937 ACCTTAAGGACAAGACTAATCC 59 5013534 5013552 TTATAGGCGGTCTTCATGC 59 NA Drosophila melanogaster 50 CG8083 FBgn0025709 FBtr0088561 3 1 3 137 2R 4967664 4967744 AACTGGATCATGAGTTGGAC 59 4967844 4967862 AAATCGAGATCCTCACCAG 58 NA Drosophila melanogaster 50 CG13748 FBgn0033355 FBtr0088656 1 1 1 111 2R 4827989 4828007 AAAGAGTACGTTGGAGTGG 59 4828082 4828100 AGATGGCGTCAAAGAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088988,FBtr0088989,FBtr0088990 3 3 9 92 2R 3362872 3362952 AATAAATGCAGGAGATCGG 57 3361300 3361318 GGTTGTGATGTGAAGATCC 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111070,FBtr0111098,FBtr0111062 2 3 60 84 2R 3238142 3238160 TTCCTATACACGGTCTGTG 58 3236471 3238097 CTTGTACCATCTCATAATGGGA 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111080 1 1 60 80 2R 3243725 3249230 CATCACAGAACCCATTGGT 59 3243663 3243682 TTCGAGCTCTTTATACGGTC 59 NA Drosophila melanogaster 50 CG3358 FBgn0033117 FBtr0086166,FBtr0114532 1 2 2 62 2R 2811957 2811975 CTAATAGACGGACGCTGTG 59 2812067 2812085 GATTCCGGCAATAGACTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086204,FBtr0086203 2 2 11 99 2R 2764760 2764778 CAAGGCCTTCATTGAAGTC 58 2763577 2763595 AATGAAGTGTTTGCGACTG 58 NA DesignNoJunction Drosophila melanogaster 50 Eb1 FBgn0027066 FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130 2 5 5 84 2R 2642342 2642416 CAAATCAGGTGATGGATATGC 59 2642460 2642480 TCAATATCCCGCAACTTAGAG 59 NA Drosophila melanogaster 50 jing FBgn0086655 FBtr0114364,FBtr0114363,FBtr0086104,FBtr0114365 3 4 5 187 2R 2506073 2506093 CATGTTTGACTTCTTCGACAC 59 2506242 2506321 ACTCGTCGGAAATGATCTC 59 NA Drosophila melanogaster 50 Pld FBgn0033075 FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997 1 6 6 80 2R 2141751 2142360 GACATTCAGGGTTACTTGGT 59 2142403 2142421 CTCCTTACTAGTTCCAGGC 58 NA Drosophila melanogaster 50 l(2)NC136 FBgn0033029 FBtr0086062 1 1 1 81 2R 1548366 1548384 AATGTTCAAGGCCAATCTG 58 1548244 1548321 CCAGGAGTGATGTATTGTG 57 NA Drosophila melanogaster 50 CG33347 FBgn0053347 FBtr0086090 2 1 1 122 2R 1243151 1243169 TCCTATTATGGCACCTGTG 58 1243255 1243273 ATGCCATTCTAGATTCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17528 FBgn0032999 FBtr0111275,FBtr0111277,FBtr0111274,FBtr0111276 2 4 4 83 2R 705644 705728 TGGAATATGTAAGTGGTGGT 58 705580 705598 TAATCATAATGCGCGACTG 58 NA Drosophila melanogaster 50 CR9337 FBgn0032898 FBtr0081448 3 1 1 61 2L 20863004 20863025 CTACATACCTAGGAGCTATGAG 58 20862910 20862928 AGGATTCGGCTTATAGGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17715 FBgn0041004 FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246 3 6 6 148 2L 22742091 22742164 ATAATGATCATGGCGGGTG 59 22742275 22742294 AATATCTGGCACCCATTCTC 59 NA Drosophila melanogaster 50 RpL5 FBgn0064225 FBtr0111129,FBtr0111128,FBtr0111131,FBtr0111130,FBtr0111132 2 5 5 100 2L 22428912 22428930 GTACAGATCGCCTATGCTC 59 22428770 22428849 TAGTTGGTCAATCCAACCTG 59 NA Drosophila melanogaster 50 CG1416 FBgn0032961 FBtr0085903,FBtr0085904,FBtr0085905 3 3 3 114 2L 21759359 21760490 AAGAAACTTCATCCAGCAC 57 21760568 21760586 GTCTGTTTGATGCTATGCC 58 NA Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081442,FBtr0081441,FBtr0081444,FBtr0081447 3 4 8 103 2L 20876931 20876949 ACATCCAAATGATGTCCCA 58 20874424 20875092 CGTGAACAGAAATTGTCTATCC 59 NA Drosophila melanogaster 50 CG17544 FBgn0032775 FBtr0081218,FBtr0081217,FBtr0081216 3 3 3 84 2L 19392115 19392133 CAGTGAGGAAGCAATTTGG 59 19391948 19392069 GGAAAGATGCGATATTGATGC 59 NA Drosophila melanogaster 50 CG15169 FBgn0032734 FBtr0081136 3 1 1 60 2L 18991909 18991930 TGTGTATCCGAGTTAGATATGG 58 18991951 18991969 GACACAGCTTCTCATTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10641 FBgn0032731 FBtr0081185 3 1 1 74 2L 18978665 18978683 GACTCAAGCAGATGATTGC 58 18978609 18978627 AGATCAGCAAGAACTCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10333 FBgn0032690 FBtr0081072 2 1 1 60 2L 18607946 18607967 CAAATTCTATGGAGATCTGCTG 58 18607988 18608006 TTTCTCCTGTTCCTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5758 FBgn0032666 FBtr0081036,FBtr0081035,FBtr0081037 3 3 3 80 2L 18128003 18128022 TCAGGTGTTCATTATCTCCG 59 18128064 18128147 TCCTTATCCTTGTGCATCTG 59 NA Drosophila melanogaster 50 dl FBgn0000462 FBtr0081005,FBtr0081006 2 2 3 108 2L 17438010 17438160 GGAACCAAGAGATACCTCG 59 17437920 17437938 GTTGTGGTTGTAGTTGCTC 58 NA Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976 2 4 6 108 2L 17394484 17400407 CTTATACAGATAACAGCAGCG 58 17400477 17400495 CCAATGAAGGCAATCTGTC 58 NA Drosophila melanogaster 50 CG31781 FBgn0051781 FBtr0080922 1 1 1 74 2L 16878086 16878106 CCGATTGTCAATCTCTTAGAC 58 16878141 16878160 CATGTGACTTACGACTAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080878,FBtr0080876 3 3 7 189 2L 16483962 16483982 GTCTGCATACGGTTTATACCA 59 16481537 16483811 TTGATCGATAGGCATCTGG 58 NA Drosophila melanogaster 50 cact FBgn0000250 FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847 3 4 4 184 2L 16323076 16323094 CCTTGACAGAGAAGTTCGG 59 16314809 16314829 TAAGATATCAATGTGACCCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7631 FBgn0028945 FBtr0080754 3 1 1 60 2L 15629295 15629314 GTCAAGTACGAAGAAGACGA 59 15629335 15629355 GAATGCTTCCATAGTCATACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sna FBgn0003448 FBtr0080739 1 1 1 71 2L 15477963 15477981 GATCTATCCCTGAAACGGG 59 15477910 15477928 ATAGTCACGTTTCGGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15277 FBgn0032555 FBtr0080680 1 1 1 69 2L 14908603 14908621 CAACCTCGTGTAACTCCTC 59 14908552 14908570 ATGAGGCAGTCCTTAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15279 FBgn0028886 FBtr0080686,FBtr0080685 1 2 3 160 2L 14847047 14848681 GATGAAAGGTGTTGGAGCT 59 14846905 14846924 AGTTAATGCAGTGGATACCC 59 NA Drosophila melanogaster 50 CG18146 FBgn0028939 FBtr0080589,FBtr0080588 1 2 2 72 2L 13981488 13981506 GAATCTGCAGTAGTCCAGG 59 13981684 13981703 GGTATGCAGTAGAACGAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15639 FBgn0032502 FBtr0080477 2 1 1 127 2L 13305734 13305752 TCCGATAAAGATGAGCCAC 59 13305560 13305579 CCATCATGGGATAGATAGCA 58 NA DesignNoJunction Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090015,FBtr0090014 1 2 17 197 2L 12726932 12726950 TTATATCAAGAGCGTTGGC 57 12727111 12729943 TATTTGGATAGCACTTGGC 57 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090013,FBtr0090027 3 3 17 91 2L 12731059 12737970 TCTTTATGGTTCTGGCTACC 59 12738024 12738042 GAAGTAGTACAGGAAGGCG 59 NA Drosophila melanogaster 50 CG5418 FBgn0032436 FBtr0080382 2 1 1 60 2L 12452130 12452150 CCATTTCGCACTATTATGTCC 59 12452090 12452109 AGAGCTCTGTGATATCTACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SC35 FBgn0040286 FBtr0089899 2 1 2 145 2L 12433696 12433840 CTTAAGGTCGACAATCTCAC 57 12432715 12433589 TCATAGAAGCGAACAAATGC 58 NA Nonspecific Drosophila melanogaster 50 Aats-thr FBgn0027081 FBtr0080333,FBtr0080332,FBtr0080331 2 3 3 63 2L 12104541 12104694 ATACTCGCAAGGAACTCAG 59 12104721 12104739 TTCTCCCAGAAGACATTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14945 FBgn0032402 FBtr0080295,FBtr0080294 2 2 2 162 2L 12051362 12051381 GTCAATGACTTCGATGTGTC 58 12051574 12051595 CCAGTTCATTTCGATACAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12264 FBgn0032393 FBtr0080290 3 1 1 60 2L 12000399 12000419 CCATTATGACGGTGAATAACG 59 12000441 12000459 AGTTTGCCAATCTCATCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 esc FBgn0000588 FBtr0080325 1 1 1 196 2L 11828900 11828980 TACAAATACGACACCCACG 59 11828358 11828740 AATACTTCATCGGGATCCG 58 NA Drosophila melanogaster 50 SCAR FBgn0041781 FBtr0080148 1 1 1 89 2L 10981421 10981499 TCGAGATGGTATTACTCTACG 58 10981550 10981568 AAGATTGAAGCCACATCCA 59 NA Drosophila melanogaster 50 l(2)06225 FBgn0010612 FBtr0110872,FBtr0110873 3 2 3 277 2L 10976255 10976273 CAAGGGATCAGGACTTGTG 59 10975907 10975927 CATTGTAGCCTACAATGTGAC 59 NA DesignNoJunction Drosophila melanogaster 50 porin FBgn0004363 FBtr0080183,FBtr0100584,FBtr0080182 2 3 3 60 2L 10848836 10848854 CCATCATACAGCGATTTGG 58 10848794 10848813 CAAAGTTGTAGCCTTTGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nos FBgn0011676 FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486 1 9 10 160 2L 10831340 10831358 GTCACAGGATTATCGGTCG 59 10826070 10830602 TCGAGCAGGAAAGAATCTC 59 NA Drosophila melanogaster 50 CG7294 FBgn0032284 FBtr0080128 1 1 1 185 2L 10688981 10688999 ATTCGGTAATCCCTATGGC 58 10688814 10688832 TATCCGTAGAAACCACCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RluA-1 FBgn0051719 FBtr0080040,FBtr0080039,FBtr0080041 3 3 3 80 2L 10464363 10464384 TATATCCATGTTCAAGAGCACC 59 10464242 10464324 CTATGATGAACAACGGAAGTG 59 NA Drosophila melanogaster 50 CG5322 FBgn0032253 FBtr0080042 1 1 1 82 2L 10454851 10454962 ACTTATCAAGTACGTCAACG 57 10454788 10454808 CATAAAGATAACACGAGGGTG 58 NA Drosophila melanogaster 50 pie FBgn0005683 FBtr0080046 3 1 1 60 2L 10421834 10421852 CGTGGGTGATACTATGCTG 59 10421792 10421811 ACCAAGCATTTAAGATGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5362 FBgn0032237 FBtr0080050 2 1 1 72 2L 10394060 10394081 CGAGATCAAGAATAAGCAATGG 59 10394009 10394028 GCTTAACTTTGTCTTAGCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CYLD FBgn0032210 FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069 1 5 5 80 2L 10296852 10296949 CCGTTTCTAAAGCTAAGCTC 58 10296791 10296812 CGGTAATGTTAACTTCTCATCC 58 NA Drosophila melanogaster 50 tai FBgn0041092 FBtr0079794 1 1 1 80 2L 9241542 9241616 TGCTCAAGCTACTAAACGA 58 9241659 9241678 GGGAGTTGTTCATAGAACCT 59 NA Drosophila melanogaster 50 CG9555 FBgn0032085 FBtr0079761 1 1 1 90 2L 8992783 8992858 CTTTATCCTTCCATGCCAG 57 8992912 8992930 TAAAGCAATCGAAGACCAG 57 NA Drosophila melanogaster 50 fos28F FBgn0013442 FBtr0079585 1 1 1 60 2L 8181132 8181150 CCAGTTACTCTTTGGACGA 58 8181174 8181192 GATAAGTTGCTGGACAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mts FBgn0004177 FBtr0079525 2 1 1 156 2L 7830883 7830901 ACAGTCTGGATCACATTCG 59 7831021 7831482 GTTTCCGAAATATCCTGGC 58 NA Drosophila melanogaster 50 Gr28b FBgn0045495 FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458 3 5 5 118 2L 7455130 7455212 TTGTATTTCACGATCAGCG 58 7455030 7455049 TTATTGAAGGTCTCACAGCA 58 NA Drosophila melanogaster 50 Tango1 FBgn0031842 FBtr0079296 3 1 2 154 2L 6652557 6653217 AACGGTCAGAATGAAGAGG 59 6653334 6653353 CTGAAGTAGCCGGATAAGAC 59 NA Drosophila melanogaster 50 eya FBgn0000320 FBtr0079334,FBtr0079335 1 2 2 231 2L 6528505 6528585 TATCGTGGAAATGTTGGCA 59 6528292 6528310 TCTCGATGTTGAAGATGCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6907 FBgn0031711 FBtr0079096 1 1 1 61 2L 5524886 5524904 CAAGACTACCTTGTGGGAC 59 5524929 5524947 AGAACTCCTCGTCAATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14023 FBgn0031698 FBtr0113022,FBtr0079081 2 2 2 61 2L 5323376 5323394 AATTACAAGGACAGCAGCA 59 5323216 5323351 GTTGTTGAAGCAATCAGGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14033 FBgn0046776 FBtr0079065 1 1 1 118 2L 5243823 5243841 TTCAAAGGACTTGGACACC 59 5243923 5243941 TGTTCAGCTCTGTGTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pgant5 FBgn0031681 FBtr0079026,FBtr0111024 2 2 2 113 2L 5077708 5077787 CTCAACTTCCGATGGTACC 59 5077613 5077633 CTTATCGATGGAGAACAGACC 59 NA Drosophila melanogaster 50 His3.3A FBgn0014857 FBtr0079011 2 1 2 291 2L 5055489 5055507 GGACTTCAAGACCGATCTG 59 5055899 5055919 ATAGACCTAAGTACTAAGCGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 BG642163 FBgn0083938 FBtr0110769 2 1 1 60 2L 4642516 4642534 GAATTCGCCTCTTTACCCT 59 4642553 4642576 GATATCAGGTATACTCTCACTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k05819 FBgn0022153 FBtr0077433,FBtr0077432 1 2 2 85 2L 4396834 4396852 ACAGATTGGATTCACCGAC 59 4396901 4396981 CAACATCAGGTTGCAAGTG 59 NA Drosophila melanogaster 50 CG3714 FBgn0031589 FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077482,FBtr0077479 2 5 6 115 2L 4190819 4192646 GAGAAGTCATTCAGGAGTGG 59 4190723 4190741 GAAAGATAGGCCAGATCCC 59 NA Drosophila melanogaster 50 CG12400 FBgn0031505 FBtr0077617 3 1 1 143 2L 3145370 3145388 AGAAGAGGAACGAGTACCT 59 3145190 3145208 TTAGATCCACTTAGCGCAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Pgk FBgn0003075 FBtr0077739 2 1 1 72 2L 2748090 2748108 GAACATCAAGTACACCCTG 57 2748036 2748054 TAGGAAGATCACATCCTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15385 FBgn0031397 FBtr0077845 1 1 1 81 2L 2211712 2211785 ACTTGGTCAACAGGTATCG 59 2211649 2211668 ACCTTGTTCCAGTACATGTG 59 NA Drosophila melanogaster 50 GlyP FBgn0004507 FBtr0100485,FBtr0077828 1 2 2 76 2L 2134900 2134918 CAACAACCACGTAAACACG 59 2134957 2135046 CATCGTTGAAGAACTTGAGG 58 NA DesignRelaxed Drosophila melanogaster 50 dpr3 FBgn0053516 FBtr0091458 1 1 1 104 2L 2066584 2066749 ATAAATCGGTATCCTGGATACG 59 2065725 2065743 AGTCCTTCGATTCAGTCAC 59 NA Drosophila melanogaster 50 CG7337 FBgn0031374 FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012 1 5 5 129 2L 1937464 1937482 CACAATACGGAGAATGGGA 59 1937575 1938517 TATGGCCTACATTCTCCAG 58 NA Drosophila melanogaster 50 CG17652 FBgn0031361 FBtr0077904 3 1 1 144 2L 1731808 1731890 TCAAATCGATGACCAAAGAC 58 1731683 1731701 TTGGAGGCTTTAGATGGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31926 FBgn0051926 FBtr0077931 2 1 1 60 2L 1496879 1496898 GCAACTCCTTGTTGATTCTG 59 1496918 1496939 ATATCGTAGGTCGTATAGTAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GABA-B-R3 FBgn0031275 FBtr0078001 1 1 2 93 2L 755289 755839 TACTTAGGGAGACGGACAC 59 755896 755914 AACATTCGAAGCCTGTAGG 59 NA Drosophila melanogaster 50 baz FBgn0000163 FBtr0074388,FBtr0111000 3 2 2 86 X 17085335 17085353 ATTTGAGTCCGGAGAAGAG 58 17085400 17085482 GATTGCTCCATCTATTCATCTC 58 NA Drosophila melanogaster 50 CG4756 FBgn0030788 FBtr0074331 3 1 1 61 X 16682608 16682629 GAAACACTTCAAGACAATACCC 59 16682650 16682669 CCATGTACACGAAGAATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 caz FBgn0011571 FBtr0074217,FBtr0074218 3 2 2 119 X 16186669 16186931 TGCAATAGATGTAAGACTCCC 59 16187012 16187030 GGATCCACGATCATTTCCT 59 NA Drosophila melanogaster 50 CycD FBgn0010315 FBtr0074163,FBtr0074164,FBtr0074165 2 3 3 61 X 15802049 15802131 TTAAATGGGAGCTGTATGTG 57 15802007 15802025 CAAGGGAGTCACAGATGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15734 FBgn0030374 FBtr0110815,FBtr0073636 2 2 2 73 X 11980918 11980936 GCACACCTATCAAGTTTGG 58 11980783 11980884 ACTTATCGGGCGAATAATAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15202 FBgn0030271 FBtr0073438 1 1 1 128 X 11037217 11037300 GAAATTAGCTATTGCGGTCG 59 11037391 11037409 GATGTAGTTGCTCTCGGAC 59 NA Nonspecific Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0110967,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 3 9 9 105 X 10691466 10691555 TTCTACAGTGTACAGTCTGC 59 10691380 10691398 GTTGCAATTGTTCTTTGGC 58 NA Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071474,FBtr0071478,FBtr0071477,FBtr0071475 2 7 7 97 X 10172050 10172137 CCGAGGCCTTTAGATTCAG 59 10171971 10171991 AAAGTAGCTCTCGAAAGTCTC 59 NA Drosophila melanogaster 50 CG1958 FBgn0029940 FBtr0071046 1 1 1 60 X 7161670 7161692 CTATAACTTCTCTGATGTGGAGG 59 7161712 7161730 CTTGAGATACCTAGCAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17717 FBgn0029877 FBtr0070944,FBtr0070943 3 2 2 159 X 6484266 6484349 TATCATCTTGCAGCAGGTG 59 6484472 6484490 GAGCATAAATCGTGTGGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15767 FBgn0029809 FBtr0070813 1 1 1 60 X 5684164 5684182 CTTAAGGTGTCCCAGTACG 59 5684204 5684224 GTTAAACACCTCATTCTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11473 FBgn0029779 FBtr0070857 3 1 1 123 X 5523777 5524074 TATTGTGGGATTCATCAGGG 59 5523673 5523691 GATAATGCTGAACACGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11596 FBgn0023522 FBtr0070318,FBtr0070320 3 2 3 177 X 1823042 1823060 TCCATTCGATGAAGCTGAC 59 1823198 1823292 TATATCCTTCAGCTCGAAATCG 59 NA Drosophila melanogaster 50 CG41520 FBgn0085665 FBtr0114112,FBtr0114111 3 2 2 84 U 1352854 1362604 GGCAACAAACGATATGCTC 59 1362649 1362670 CCTCATATCCGTCTATTTCCAG 59 NA Drosophila melanogaster 50 CG31524 FBgn0051524 FBtr0085684,FBtr0110860 1 2 2 81 3R 26339150 26339229 CGAAAGGAGAAATGAAGAAGG 58 26339089 26339110 CTGGAATATTTCCAGATCATGG 58 NA Drosophila melanogaster 50 CG10513 FBgn0039311 FBtr0114505 2 1 1 62 3R 21101884 21101902 TACATTCCCACATTGAGGC 59 21101775 21101858 TGTGACAGCAAAGAATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18410 FBgn0039226 FBtr0084741 2 1 1 251 3R 20625025 20625100 AAAGAGTCCTGACAATGACC 59 20624248 20624266 CAATCAATCCCTTGATGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6982 FBgn0039014 FBtr0113267,FBtr0113268 2 2 2 60 3R 18555467 18555542 TGATGCTTGTATCCTTGCT 58 18555564 18555584 GCAAAGCATACTGGATATACG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31219 FBgn0051219 FBtr0113400,FBtr0083783 1 2 2 60 3R 15477508 15477526 ATCGAATACGATATCGCCC 59 15477550 15477680 TGATTCCTGTCCTATAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31222 FBgn0051222 FBtr0083705 3 1 1 60 3R 14773673 14773691 CACGCTCTATATTTCCGCT 59 14773714 14775325 CGAGCTGCATAGAATAAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cha FBgn0000303 FBtr0089368,FBtr0089367 2 2 2 222 3R 14549779 14550862 GATTCCCTGACACTCTACC 58 14554505 14554524 TTGAGCCAGTAGTAATAGGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG4053 FBgn0038482 FBtr0083416 3 1 1 60 3R 12957539 12957557 CTAGTCCATTGCTTGTACG 57 12957497 12957515 CATGGATCAACGCTATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(var)3-7 FBgn0003598 FBtr0082736 1 1 1 86 3R 9091970 9091988 GATTACCAGCTTCCTACGG 59 9092038 9092124 CGAATATCTGAAGAGCCCT 58 NA DesignRelaxed Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082457 3 1 6 67 3R 7417027 7417238 AAGCTAAAGATCCGAGAGG 58 7416978 7416996 GAATACTCGTTGGCTACGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG17734 FBgn0037890 FBtr0082360 2 1 2 268 3R 7068719 7069505 GGGTATTACCGGATTCGTG 59 7068209 7068227 TAGCCGATGTCATCTTGTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Ugt35a FBgn0026315 FBtr0082374 3 1 1 130 3R 6997999 6998084 AAATAATGGCGGCATTTGG 59 6997887 6997905 TAAATCCTTTACAGCCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14696 FBgn0037853 FBtr0082332 1 1 1 106 3R 6709204 6709281 GCTCGAGTATAAGGAACCC 59 6709116 6709134 AATAAGAGGTGCTCACGTC 59 NA Drosophila melanogaster 50 Rel FBgn0014018 FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338 1 4 4 135 3R 4872362 4872380 ATATTCGAGGAACTGTGCA 58 4871949 4872263 CCTGGTTCAAGTTCATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8007 FBgn0037600 FBtr0081876 2 1 2 221 3R 4446100 4446119 ATGCTTCTACATTCCACTGG 59 4452034 4452052 TGATTGTGAGCAGAGTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2846 FBgn0014930 FBtr0081763 3 1 1 186 3R 3738577 3738659 TCCCAACAGCTAACTTTCC 59 3738409 3738428 TTAAAGTCGTGTAGCATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1024 FBgn0027514 FBtr0081733 2 1 1 69 3R 2205787 2205805 TACATATGTCCGGAATGCG 59 2205673 2205754 GTTTCGTGTTCAGATGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL35A FBgn0037328 FBtr0078769 2 1 1 261 3R 1291742 1291885 CCATCCTCAAGATTGAGGG 59 1291431 1291451 TAAATCCTTGATGGGTACAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG7370 FBgn0037133 FBtr0078436 2 1 1 163 3L 21763097 21763115 CACCTACACTCACTGACAC 59 21763337 21763357 GACCAGTATTGTAGTAAGGCA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG10586 FBgn0037036 FBtr0078335 1 1 1 62 3L 20949266 20949284 CACGGTATCAGTACCTGTG 59 20949109 20949240 GAGACTGATTCCCGATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17145 FBgn0036953 FBtr0074823 2 1 1 112 3L 20214958 20215037 AAATTTGGTGCCATACTGG 58 20215113 20215131 CGGATCACCGTATTATTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 serp FBgn0052209 FBtr0074953 2 1 1 91 3L 19698970 19698988 CGATGGAAACTGCATTGAG 59 19695587 19698915 CGTTGTCGATATCACAGGT 59 NA Drosophila melanogaster 50 CG13053 FBgn0040801 FBtr0075480 3 1 1 216 3L 16252442 16252526 ATGCGCAATTATCTCTGGT 59 16252244 16252262 GATTGGCATACGGATAGGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7257 FBgn0036224 FBtr0076040 2 1 1 113 3L 11935814 11935904 TCTTGAAGGTCGTTTCCTC 59 11935978 11935999 CCATGAATATGATACATGGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11726 FBgn0036156 FBtr0076172 3 1 1 60 3L 11388485 11388503 GAGGAACTCACCATTTCCT 58 11388527 11388545 TATAGGATTATCCCTGCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL12 FBgn0011787 FBtr0076511 1 1 1 80 3L 8950443 8950461 GTGAAGAACCTACTCGAGG 59 8950505 8950523 GTCCTCCTTAACGATGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13309 FBgn0035933 FBtr0076582 1 1 1 60 3L 8804031 8804123 GGCAATATGTGAACTGTTACAC 59 8804143 8804162 GGACAAGTGTACACATTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED4 FBgn0035754 FBtr0076889 3 1 1 203 3L 7243016 7243034 CTATCCCACGGACATTGAG 59 7242831 7242850 CCGAGATTCCAGTTAAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14829 FBgn0035751 FBtr0076893 2 1 1 60 3L 7230612 7230697 TAGTCGTTCTACTCACACCT 59 7230571 7230589 GCTAAAGCCTCCTTGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10063 FBgn0035727 FBtr0076935 2 1 1 60 3L 6965417 6965435 CAAATGGAGTAAGTCGGTG 58 6965313 6965394 ATTCAATGTGGAGTAGTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32240 FBgn0052240 FBtr0073336 3 1 1 238 3L 4381319 4381395 CATTTGTGACGGTTCTCAG 58 4381036 4381054 ATTCTTCATGTACTTGGCC 57 NA DesignNoJunction Drosophila melanogaster 50 FucTD FBgn0035217 FBtr0072693 1 1 1 160 3L 1417386 1417460 GATGACTGCAGTCACTACC 59 1417584 1417602 CTAATGTACGAGTGGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scf FBgn0025682 FBtr0089942,FBtr0089940,FBtr0089941 2 3 3 97 3L 1299198 1299334 ATGGAGTCAGCTACAAGAG 58 1299395 1299413 GGTAAACTCATCCTTGGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13908 FBgn0035178 FBtr0072618,FBtr0113121 3 2 2 131 3L 987428 988755 GAAGGATTGTTCGTTCCAC 58 988848 988868 TACAGTGTACGTATTCGTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4050 FBgn0020312 FBtr0071637,FBtr0071638 3 2 2 102 2R 17012649 17012668 TTATCAACCTGGCGAATCTC 59 17012506 17012585 GCTTGAACATAGTCACTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 Obp57c FBgn0034509 FBtr0113099,FBtr0086292 3 2 2 136 2R 16391213 16391293 GGTCTCCATACAGAGTCTC 58 16391393 16391411 TATTCTCGAGGTCATCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wbl FBgn0004003 FBtr0086510 2 1 1 231 2R 15137588 15137810 GGAGAACTGGAGAACAAGG 59 15138002 15138023 GGATATTGGCATAGTTCTTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10915 FBgn0034308 FBtr0086746 3 1 1 79 2R 14048950 14048969 TGGCAATCTGATATCAAGGG 59 14049011 14049029 TTTGCTGCTCAATGATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 olf186-F FBgn0041585 FBtr0086795 1 1 5 155 2R 13731906 13738566 CCAGCAGAAATACAGACGT 59 13738685 13738703 ATCACTGCAGAACTTCTCG 59 NA InUTR Drosophila melanogaster 50 RhoGAP54D FBgn0034249 FBtr0086900,FBtr0086901 2 2 2 100 2R 13477485 13477504 TAATAGTCCCACAGAGACAC 58 13477351 13477422 GGGTGAGATTCTTCTCCAG 59 NA Drosophila melanogaster 50 CG18432 FBgn0034238 FBtr0086943 3 1 1 61 2R 13428267 13428285 ATCAACGAATGCATTGGAG 58 13428309 13428386 AGCCATATGTTGAGGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30463 FBgn0050463 FBtr0113380,FBtr0113379,FBtr0087112,FBtr0113381,FBtr0087113 3 5 5 185 2R 12568513 12568531 CATATTCCGGAAACGTTCG 58 12566562 12566645 CACTTGAGATCGTTACGGA 59 NA Drosophila melanogaster 50 CG15712 FBgn0034131 FBtr0087127 1 1 1 60 2R 12372543 12372561 AGGCTTTGAGGGATAAGGA 59 12372446 12372519 AGATCTCTGGAAAGTCTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shot FBgn0013733 FBtr0087619,FBtr0087617,FBtr0087620,FBtr0087616,FBtr0087621,FBtr0087618 3 6 6 100 2R 9757615 9757633 TACACGATGAGGTCAAACG 59 9757468 9757551 CTGGGAGTCTCCAAATCTG 59 NA Drosophila melanogaster 50 CG33137 FBgn0053137 FBtr0087733 2 1 1 60 2R 9063117 9063207 AATCCTCAAGAAGGACTACAG 58 9063229 9063247 GTTTATCACGACGTCTACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7745 FBgn0033616 FBtr0088119 3 1 1 60 2R 7196525 7196544 CCCGTATTCAACTAAATGGC 58 7196567 7196585 CCAAAGTGACTACCATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp49a1 FBgn0033524 FBtr0088311,FBtr0088313,FBtr0088312 3 3 3 81 2R 6338171 6338266 GTAAAGGAAACTCTACGAATGC 59 6338111 6338129 GGTAACCATTGATGACAGC 58 NA Drosophila melanogaster 50 brp FBgn0086376 FBtr0111001,FBtr0113488 1 2 2 182 2R 5424065 5424083 AAGAAGCTCATGGATACGC 59 5424438 5424530 GATCTTTAAGGCTTGTTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 Pdk FBgn0017558 FBtr0112892,FBtr0088508 2 2 2 124 2R 5319920 5320002 AAATCAGCACACCCTTCTC 59 5320090 5320108 ATAGGAATCGCGCATTCTC 59 NA Drosophila melanogaster 50 CG34431 FBgn0085460 FBtr0112732 2 1 1 60 2R 3833371 3833389 CGATTCAACATATCCTGCT 57 3833413 3833431 TTCGTTGGTTCTGATTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13086 FBgn0032770 FBtr0081197 2 1 1 60 2L 19365130 19365148 GATAACCGCTTCTACTGGA 58 19365172 19365190 CCCAGTTGGAGTAGTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10431 FBgn0032730 FBtr0081134 3 1 1 146 2L 18977189 18977276 TCTTGGAGATGATCTGAATCTC 59 18977382 18977401 TAAGTAACCTTGACTAGCGC 59 NA InUTR Drosophila melanogaster 50 tos FBgn0015553 FBtr0081131 1 1 1 67 2L 18681088 18681161 TCTTGAGGTAGATGACGAC 58 18681039 18681057 TAAACATGTGCCTGAAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15149 FBgn0032659 FBtr0081027 1 1 1 77 2L 18008269 18008287 AATTTCGCGAAGTATCCGA 59 18008328 18008414 GAGCAGGATCTTTCTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15140 FBgn0032631 FBtr0112773 1 1 1 60 2L 17286557 17286678 CTACTTCAGGTGAAACCCT 58 17286702 17286720 ATTCCATATCCTTGCTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31805 FBgn0051805 FBtr0080958 2 1 1 83 2L 16898807 16898826 TAAACAGGCGAGTATCAAGG 59 16898676 16898762 AAACTTTCGCTATCGAAGAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG13258 FBgn0032582 FBtr0080853 2 1 1 77 2L 16292713 16292960 GAATTGTGCTCTTAGCTGC 59 16292654 16292672 GGATCTTCACCCAATCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5421 FBgn0032434 FBtr0080383 3 1 1 75 2L 12446821 12446839 GGACATCACTGTCTACTCC 58 12446613 12446782 GTCTTGCCACAGGATATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6388 FBgn0032430 FBtr0080367 2 1 1 121 2L 12429629 12429647 AGTTCGATGAACTCCATCC 59 12429730 12429807 GTCACCAATCATAATAGTGGC 58 NA Drosophila melanogaster 50 CG6192 FBgn0032341 FBtr0080230 3 1 1 83 2L 11104383 11104402 TATCCAATCCGCAGATTCTG 59 11104248 11104266 TAGATGACTCAGCTGAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG32829 FBgn0052829 FBtr0079370 2 1 1 65 2L 6915984 6916002 AGGACGAGTACATCAAGGA 59 6915937 6915955 ACTTCTTATGATGTCCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9232 FBgn0031845 FBtr0079322 1 1 1 80 2L 6667004 6667099 GTTGTTATCGACGAGTGGA 59 6666942 6666962 TCCCTTGTTCTCGAATATCTG 59 NA Drosophila melanogaster 50 l(2)k05819 FBgn0022153 FBtr0077433,FBtr0077432 1 2 2 85 2L 4396834 4396852 ACAGATTGGATTCACCGAC 59 4396901 4396981 CAACATCAGGTTGCAAGTG 59 NA Drosophila melanogaster 50 lectin-22C FBgn0040105 FBtr0077859 3 1 1 69 2L 2036510 2036529 AAATGTACGATTACCCATGC 58 2036043 2036481 GAATTTAAATCTTCCTCCTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31920 FBgn0051920 FBtr0078097 2 1 1 74 2L 328638 328656 GATCCCAAAGATCCACCTG 59 326051 328600 ACCACAAACTTCATCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dsp1 FBgn0011764 FBtr0089259,FBtr0089261,FBtr0089260 3 3 5 242 X 16228438 16230333 CAAATACAGCAATTGGCTG 57 16230539 16230557 ATAATCATAGCCCGTGGTG 59 NA DesignRelaxed Drosophila melanogaster 50 fw FBgn0001083 FBtr0112806,FBtr0073580 1 2 2 97 X 11888948 11889034 ACCTATAAGATTGGAGCACTG 59 11888871 11888889 CTCCATTGTCCACTATCCG 59 NA Drosophila melanogaster 50 CG1561 FBgn0030317 FBtr0073539,FBtr0073538 3 2 2 60 X 11477263 11477282 AGCATATGAGGTCTTTCTGC 59 11477222 11477243 TCCGATTATCTTCCACTTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1745 FBgn0030301 FBtr0073499 1 1 2 215 X 11351593 11351611 GAGGATCAACAAACAGCAG 58 11351790 11352273 AAAGTTGGGTTCGGATAGC 59 NA DesignRelaxed Drosophila melanogaster 50 Vago FBgn0030262 FBtr0073427 3 1 2 179 X 10983615 10983633 TATCGGTGAAGTCTTCACG 59 10983842 10983860 CTCTTGCACTCATACAGTG 57 NA DesignNoJunction Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475 3 6 7 170 X 10173218 10217611 GAAGGTCAAAGAGATGATGG 57 10173067 10173085 AGTCCCATAATGTACAGGG 58 NA Drosophila melanogaster 50 fs(1)h FBgn0004656 FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119 2 5 5 117 X 7944306 7944477 CAAGAAAGATGAGTCCGCT 59 7944207 7944225 ACTCGAACTGCTATCACTC 58 NA Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 3 12 15 239 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978621 6978640 AATTGATCTACCTCTGTGCA 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070740 3 1 4 66 X 4959928 4959946 CCAAACAATAGTCTCGACG 58 4960135 4960153 CCTCGTCGTACTCAATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 trol FBgn0001402 FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964 3 4 7 81 X 2386428 2386446 TAGTAATGATCGCAGACCG 58 2384862 2386383 TCCAACGTCGTTATTCTCC 59 NA Drosophila melanogaster 50 ttk FBgn0003870 FBtr0085827,FBtr0085825,FBtr0085829 1 3 6 128 3R 27554189 27558647 AACAGCACTTCCGTTACTC 59 27558739 27558757 GGAAATCGTTTCCGAAGGA 59 NA Drosophila melanogaster 50 CG33203 FBgn0053203 FBtr0114574,FBtr0085348 1 2 2 87 3R 24700983 24711989 TACTGACACATGCCATACC 59 24700914 24700932 AAGGACAGGAACTTGTAGC 59 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 1 5 6 80 3R 20045369 20045388 ATGAACATCTACAACGAACC 57 20025660 20045326 TGGATTCACGGTAAATGAC 57 NA Drosophila melanogaster 50 glec FBgn0015229 FBtr0084157 1 1 1 60 3R 17677576 17677594 GTACAATGTTCGCAAGACC 59 17677534 17677553 GTTGTAACCATTCTTGACGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6800 FBgn0038902 FBtr0084132 1 1 1 82 3R 17602704 17602775 AAGATACGGTTTCCCAACTC 59 17602820 17602838 ACCAGATTGATTTCCACCG 59 NA Nonspecific Drosophila melanogaster 50 fru FBgn0004652 FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642 3 13 13 131 3R 14261181 14261201 ATGTCAGATACTCAGAGATGC 59 14260763 14260781 TGTTATCTGTGAGACCACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31302 FBgn0051302 FBtr0083097,FBtr0083098,FBtr0083096 2 3 3 129 3R 11211327 11211405 CCCTAGATTTGGACACTCG 59 11211498 11212200 TCCTCTGGAGGATCATAGG 59 NA Drosophila melanogaster 50 rdx FBgn0086364 FBtr0082871 2 1 5 180 3R 9796820 9797003 ATACAAGAGCCAAGATTGC 57 9796336 9796677 ATTTAACCACTTTGACCTGC 58 NA Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082802,FBtr0082801,FBtr0082806 3 3 8 97 3R 9488692 9488710 ATCATCCTCTCGTTATGGC 58 9488770 9491190 TGTAATCCTTGAGATCCTGC 59 NA Drosophila melanogaster 50 CG9471 FBgn0037749 FBtr0082160,FBtr0113211 2 2 2 80 3R 5597058 5597076 TATTATTGGAGGAACCGGC 59 5596941 5596960 TATAGCAATTTCACCGACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17816 FBgn0037525 FBtr0113203 3 1 3 80 3R 3691466 3693763 AAGCTACTCTACATGAGTTGG 59 3691136 3691427 CCATAATGGTCACTTGTTTCTC 59 NA Drosophila melanogaster 50 Pbprp4 FBgn0011282 FBtr0112867 1 1 2 94 3R 3076873 3076908 TAACCAGCATGATCCTTCG 59 3076797 3076815 ATAGTCCGTCATCAAACCG 59 NA Drosophila melanogaster 50 CG2017 FBgn0037391 FBtr0078664,FBtr0114518,FBtr0078663,FBtr0078662,FBtr0078661 3 5 5 93 3R 1685467 1685486 ATATGTTTAGGCACATGCAC 58 1685182 1685200 TTGACCACATTACCCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1208 FBgn0037386 FBtr0113197,FBtr0113196 2 2 2 118 3R 1662757 1662830 TTTAATTGGTATCGCAACGG 58 1662911 1662929 CAATCGTAAGGAGCAACTG 58 NA Drosophila melanogaster 50 Eip75B FBgn0000568 FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149 1 4 4 110 3L 17948398 17948416 AGATGGATATCGTTGGCTC 58 17948141 17948324 TGAGTATTCCGATCTGCTG 58 NA Drosophila melanogaster 50 Pdi FBgn0014002 FBtr0075650,FBtr0075648 1 2 2 60 3L 15131457 15131477 CATTAAGATCTCGTCCTTCCC 59 15131417 15131435 GATGACCTTGTTGTCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14151 FBgn0036089 FBtr0076280 2 1 1 177 3L 10621213 10621231 TTATACTGCTCTACGGCCT 59 10620992 10621011 CTATACTTCTCATCGGGAGG 58 NA DesignNoJunction Drosophila melanogaster 50 Cdc6 FBgn0035918 FBtr0076647 1 1 1 60 3L 8626332 8626350 CAAACCAATGAGGAAACCC 58 8626290 8626309 TTTGGTATTTGTTGCGTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10147 FBgn0035702 FBtr0076987 1 1 1 60 3L 6480273 6480294 CGAGTCTTAAGAAACATATCCG 58 6480234 6480252 TAGCTGCAGGCATAATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr65Az FBgn0035686 FBtr0076996 3 1 1 75 3L 6154250 6154271 GATATACCCATCATTAAGCTGG 58 6154363 6154381 CGTTTCCAGTCTCGTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32415 FBgn0052415 FBtr0077111 1 1 1 60 3L 5798334 5798352 TGACAACCTTCAAGAACCA 58 5798376 5798394 GTCCATAGACCATGTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11347 FBgn0035542 FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141 1 6 6 225 3L 4419447 4419465 TATTAGGTCCACCCAGGAG 59 4419654 4419748 GTTCTTGCTCTTCTGACTC 57 NA DesignRelaxed Drosophila melanogaster 50 CG12011 FBgn0035257 FBtr0072764 3 1 1 60 3L 1695335 1695353 AGCATCTACAACAAGTTCC 57 1695376 1695395 ATGTGTTTACCACAGAAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7955 FBgn0035244 FBtr0072754,FBtr0072756,FBtr0072755 2 3 3 107 3L 1621163 1621181 CTTGTTCAAAGGAGCTGTG 58 1621252 1621329 CTAGCAATGCCATATCCCA 59 NA Drosophila melanogaster 50 zip FBgn0005634 FBtr0072398,FBtr0072399 1 2 4 100 2R 20885209 20885808 TGCTCATTAACTTCTCGGTC 59 20885128 20885149 CATCTTCAATCCATTGACTACC 58 NA Drosophila melanogaster 50 CG5819 FBgn0034717 FBtr0071811,FBtr0071812 2 2 2 154 2R 18183159 18183178 CTTGGTCCATCATAATGCTG 58 18183295 18183370 GTTGAGATCTCGTATGCGT 59 NA Drosophila melanogaster 50 exu FBgn0000615 FBtr0086243,FBtr0086242,FBtr0086244 3 3 3 134 2R 16557493 16557511 TATGCTGAAGTCGATGCAG 59 16557294 16557313 TAGATAAGCACAATCCCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457 1 11 15 108 2R 15365201 15366256 TTCACTCTGGTCAAACCAG 59 15366328 15366346 TTGGAGAAGAAGCTCATGC 59 NA Drosophila melanogaster 50 Fak56D FBgn0020440 FBtr0114605 3 1 5 175 2R 15319735 15319817 AGAATTGCTAAGATCCTGCTC 59 15319580 15319598 ATGAGTGGTTCGACTTCAG 59 NA Drosophila melanogaster 50 cer FBgn0034443 FBtr0086551 1 1 1 78 2R 15284038 15284056 CAAGAACTACGAGGCAGAG 59 15283978 15283996 ATTGTGTTCCTCAATCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6553 FBgn0033880 FBtr0087642 3 1 1 60 2R 9742773 9742792 ATACCAACGACTACAGTCAG 58 9742732 9742752 TCCTATGGATACTACTTTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr47Ef FBgn0033603 FBtr0088186,FBtr0088187 2 2 2 60 2R 7157262 7157283 AAGGGATCTGAGAATGAAATCC 59 7157223 7157241 CTTCGGGATTTGTGTAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12391 FBgn0033581 FBtr0088205 2 1 1 60 2R 7036590 7036608 GTCGAGGAAATTGAACCAG 58 7036548 7036568 CAGTGATTAGTTCACCTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 3 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421093 TAGTAAGGTAGCAAAGTAGGGA 59 NA Drosophila melanogaster 50 boca FBgn0004132 FBtr0088953 1 1 1 60 2R 3454096 3454115 CCAAGAAGTTCAAGGAGGAG 59 3454055 3454073 CTGTAGTCGCGTATATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7843 FBgn0033062 FBtr0086021,FBtr0086020,FBtr0086018 3 3 3 212 2R 1969490 1969508 TATCTACGCGATCCTAAGC 58 1968905 1969243 TTCCAAAGGCAATTCTCTG 57 NA DesignRelaxed Drosophila melanogaster 50 CG17665 FBgn0039997 FBtr0111269,FBtr0111268 1 2 2 83 2R 124473 124492 AGTTTGAGACATACGAACAG 57 124352 124429 GCAATATGTCCTGTATACACC 58 NA Drosophila melanogaster 50 vig FBgn0024183 FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720 1 4 4 81 2L 15065447 15066946 GATAGAACTGGTGTGAAGTC 57 15065385 15065403 CATCAATAGCCTCCTTGAC 57 NA Drosophila melanogaster 50 CG33309 FBgn0053309 FBtr0080674,FBtr0100163 3 2 2 60 2L 14812256 14812274 CAAGAGGCAATGTTTGCTG 59 14812295 14812316 TATAGTGGTTCACTTCTATGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wb FBgn0004002 FBtr0080620,FBtr0080619 1 2 2 84 2L 14321170 14321188 CTGATAGGAAGAGCAGCTC 59 14321236 14321318 CTCGACAGTTCTGACAGAC 59 NA Drosophila melanogaster 50 CG15639 FBgn0032502 FBtr0080477 1 1 1 127 2L 13305734 13305752 TCCGATAAAGATGAGCCAC 59 13305560 13305580 CCATCATGGGATAGATAGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31910 FBgn0051910 FBtr0079304 3 1 1 60 2L 6744984 6745002 CGATAGCCATCATAGAAGC 57 6744942 6744961 ATAGTTGAATATGTCGACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9664 FBgn0031515 FBtr0077607,FBtr0077606,FBtr0077605 3 3 3 82 2L 3292104 3292184 CCAGAGATATGTTTGCTGTC 58 3292041 3292059 TATCTGCCAGTAGACAACG 58 NA InUTR Drosophila melanogaster 50 CG10597 FBgn0030832 FBtr0074398 3 1 1 116 X 17125080 17125234 ATGCATCACAAACCATTGG 58 17124982 17125003 CGAGACTAACTCTTTAAGATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14414 FBgn0030571 FBtr0073931,FBtr0073930,FBtr0073932 1 3 3 219 X 14475705 14475797 TATGATGAAACGCAGAAGC 58 14475980 14475998 CGCGATCCTTGTTAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 Rbp1-like FBgn0030479 FBtr0073790 2 1 1 162 X 13278472 13278490 CGTGTCGAAATGTCATCAG 58 13275072 13278346 GTGATCTATAGCGTCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dredd FBgn0020381 FBtr0114561,FBtr0114560,FBtr0114559 3 3 3 84 X 528214 528232 TACTACAAACCGAAGTTGC 57 528080 528169 CTATCCTAAAGAGCTCATTTGG 58 NA Drosophila melanogaster 50 CG17267 FBgn0038821 FBtr0114503,FBtr0083931 3 2 2 71 3R 16564042 16564326 TTGGCTCCAGAAACTATCC 58 16563989 16564007 TATAGCGCCTTCTGTATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yrt FBgn0004049 FBtr0082793,FBtr0114376,FBtr0114375 3 3 4 172 3R 9257515 9257594 ACTGTGAAATTGGATCCAG 57 9257227 9257246 CTATCTTTATCCGACAAGCC 57 NA Drosophila melanogaster 50 CG2023 FBgn0037383 FBtr0078666 2 1 1 82 3R 1650016 1650088 ATACACGACATCCTGAACAG 59 1649953 1649971 ATAGCAGACAGTTTGGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdc6 FBgn0035918 FBtr0076647 1 1 1 60 3L 8625389 8625485 AGCAAGACACTCTAAAGCC 59 8625347 8625365 TAGACCTTGTTCAGCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fd59A FBgn0004896 FBtr0071898 2 1 1 80 2R 18756377 18756716 GCTTTCCATACTACAAGGAC 57 18756759 18756777 TTATGAAGCAGTCGTTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fak56D FBgn0020440 FBtr0086543,FBtr0114606,FBtr0086544 2 3 5 82 2R 15323971 15324060 AAATGAGATTAACTCCGAGGAG 59 15323910 15323930 CCTTGACATTAAACCGAACAG 59 NA Drosophila melanogaster 50 CG9000 FBgn0034176 FBtr0087059 3 1 1 63 2R 12889303 12889321 TCGTAGTCATCGAGAATGC 59 12889107 12889276 GTTTGGTACACTTTCACCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rya-r44F FBgn0011286 FBtr0088640,FBtr0088638,FBtr0088637,FBtr0088639 1 4 4 81 2R 4772298 4772385 GTTGTTAACGGCACTATTGG 59 4772426 4772447 AGTACTTAAGAATCAGCTCCAC 59 NA Drosophila melanogaster 50 CG3403 FBgn0033094 FBtr0086141 2 1 1 87 2R 2583397 2583415 ACAAGTACTTCCCTAGCAG 58 2583268 2583286 GAGAAGATGCGATACACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9243 FBgn0032926 FBtr0110945 3 1 2 191 2L 21166944 21167019 GAGTAGATATACAAATGCGACG 58 21166438 21166457 TATTCCCGAAATAGTCCTCC 58 NA DesignNoJunction Drosophila melanogaster 50 l(2)05714 FBgn0010607 FBtr0079051 1 1 2 70 2L 4970769 4971059 GCCAAGAATATGATTAAGGGTG 59 4970720 4970738 GAAATTATGGAGGCCTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR32525 FBgn0052525 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:R:12Ea FBgn0011948 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG12685 FBgn0040910 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-34 FBgn0064158 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG13814 FBgn0036960 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30406 FBgn0050406 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30333 FBgn0050333 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:I:49Fa FBgn0011881 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG40485 FBgn0069973 FBtr0111190,FBtr0111189 1 2 2 60 X 22363899 22363920 GACATTCTTATCAATAACGCCG 59 22363860 22363878 CTACCGACATAGTCAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14619 FBgn0031187 FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350 3 5 5 124 X 21868684 21868703 TTATGAACTCGGTCATCCAG 59 21868790 21868868 GAGTTTGGCAAATTCGTGG 59 NA Drosophila melanogaster 50 pen FBgn0015527 FBtr0077223 2 1 1 195 X 21218449 21218567 CTTAATCACATTCAAGGCGAG 59 21218274 21218292 TGCTCTCGACATAAAGCAG 59 NA Drosophila melanogaster 50 CG32521 FBgn0052521 FBtr0077236 1 1 3 60 X 21080862 21080880 GAACAACATCTTTGCACCC 59 21080820 21080838 ATGGTTGTACGTGTAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15450 FBgn0031132 FBtr0077280 3 1 1 65 X 20696333 20696353 TCTATGCTCAGATACATGCTG 59 20696380 20696398 CATGTACCAAACATCGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cactin FBgn0031114 FBtr0077305 1 1 1 61 X 20297100 20297120 CAACATATTCTATCCGGACCT 59 20297143 20297161 AGGGAGTGAGGAAGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 obst-A FBgn0031097 FBtr0077334 1 1 1 140 X 20112281 20112299 CAAGTTCAACAAGTGCGAC 59 20112748 20112766 TAGAAGATGTTGCACACGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Sdic1 FBgn0067861 FBtr0089604 2 1 1 67 X 20072338 20072356 TGGTCTACACAAAGCAGAC 59 20070434 20072307 ATCAAATGCAAGCACATCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14229 FBgn0031059 FBtr0074753 2 1 1 63 X 19588636 19588654 GAACAAGATGCTGTACGAC 58 19588591 19588609 GATCACTAGCTACTGGCTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Zw FBgn0004057 FBtr0074749,FBtr0074748 1 2 2 60 X 19565028 19565046 AACATCAAGCAGATCTGCA 59 19565154 19565173 AAGGCTTCTCGATAATCACG 59 NA DesignNoJunction Drosophila melanogaster 50 pcm FBgn0020261 FBtr0074784 1 1 1 93 X 19382707 19382779 GATTCAAGTCAGCATCATGG 58 19382633 19382651 GAAGGTGCTCAGATAGTCC 59 NA Drosophila melanogaster 50 CG7453 FBgn0030991 FBtr0074667,FBtr0074666 3 2 2 65 X 19074920 19074939 CACTGATATACACCAGGAGG 58 19074967 19074985 GTACCTGGCTTATCCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32548 FBgn0052548 FBtr0074569,FBtr0074568 2 2 2 76 X 18330497 18330515 CCTTCCTCGATTATCAGCG 59 18330439 18330457 GTAGTGGTAGAGCTTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6842 FBgn0027605 FBtr0074504 1 1 1 80 X 17802677 17802695 AATAAGAACTACGCGGAGG 59 17802738 17802851 CTGTGCCTCATATTTGATGG 58 NA Drosophila melanogaster 50 xmas-2 FBgn0028974 FBtr0074404 3 1 1 91 X 17051538 17051616 GACAGTATGAGTTGGTGGA 58 17051465 17051483 ATTGAGGTAGAGGTCTCGT 59 NA Drosophila melanogaster 50 CG9672 FBgn0030777 FBtr0074361 3 1 1 60 X 16600507 16600525 GTGGATCTCTACAATGGCA 59 16600465 16600484 TGTAGTTCGGGTTAATGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9676 FBgn0030773 FBtr0074364 1 1 1 60 X 16594035 16594053 CTCACCAGATCTCACTACG 58 16593993 16594011 TTGGAGATTATGGAGCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eas FBgn0000536 FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211 1 5 5 111 X 16178692 16178711 TCTATGTCCAGGTCAATCAG 58 16178784 16179063 AATGCATAGCCTACGTAGTC 59 NA Drosophila melanogaster 50 CG12395 FBgn0030722 FBtr0074260 1 1 1 60 X 15956085 15956103 TATAAGTCCTACGCAAGCA 58 15956043 15956061 TTAGATGTTAAAGCCGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8939 FBgn0030720 FBtr0074138 3 1 1 60 X 15893565 15893583 GCTATAAGGTCGTCGATCC 59 15893605 15893625 CTCTTCTTTGCATCCATTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8974 FBgn0030693 FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186 3 5 5 212 X 15688455 15688537 GATCCACGTAACAAAGTTCC 58 15688197 15688215 CTGTTCATCCTCGTATTGC 58 NA DesignRelaxed Drosophila melanogaster 50 Graf FBgn0030685 FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197 1 6 6 80 X 15646356 15646433 AACCAATGTTCGTTACTCC 57 15646294 15646312 TAGTTCTCCGGAATGAGTC 58 NA Drosophila melanogaster 50 Pis FBgn0030670 FBtr0074059 3 1 2 94 X 15597113 15597227 CTTTAACCAAACGCATTGC 58 15597037 15597055 CCATATCGGGCTCTTTAGG 59 NA InUTR Drosophila melanogaster 50 HDAC6 FBgn0026428 FBtr0074009,FBtr0074010,FBtr0074008 1 3 3 156 X 15229749 15230327 TTTACATTCATCCGTCCAC 57 15230447 15230465 CAATAACCGTTGTACTCGG 58 NA Drosophila melanogaster 50 dpr8 FBgn0052600 FBtr0073913 1 1 1 80 X 14338550 14347009 CAACATTGTTGAACCCGTC 59 14347052 14347071 CAAGTCAGATTGATGGTGGA 59 NA Drosophila melanogaster 50 CG11178 FBgn0030499 FBtr0073805,FBtr0073804 1 2 2 237 X 13502355 13502441 AAACTAGCACAAACCATGC 58 13502642 13502660 TAACTGAGATCTCTTGGGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 IP3K2 FBgn0085388 FBtr0112575,FBtr0112573,FBtr0112574 2 3 3 80 X 13221585 13221603 TATGTGCCCGTTTACAAGG 59 13221715 13221733 ATAGTCACTGAGCAGATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17788 FBgn0030392 FBtr0073648 3 1 1 227 X 12358357 12358375 AATAATGGTTCGCTTGTGG 58 12358566 12358584 TTTATCGCTCAGATCGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2371 FBgn0030323 FBtr0073533,FBtr0073532,FBtr0073534 2 3 3 74 X 11571989 11572007 CATATTGCGTTTGTGGGTG 59 11571933 11571951 ACATTTGATTCGTACCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1703 FBgn0030321 FBtr0073520 3 1 1 154 X 11507156 11507174 ATGACAAAGAAGGGTGGTG 59 11507291 11507382 AATAGATCGTTACCCTTGGC 59 NA Drosophila melanogaster 50 CG15201 FBgn0030272 FBtr0073439 2 1 1 213 X 11038386 11038405 AGGATGAGACCATCTTTCTC 58 11038712 11038730 ATTTAGGGACACTTGAGGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG32681 FBgn0052681 FBtr0071466 2 1 1 60 X 10273389 10273407 GTTTCCAGAACTGTCATCC 58 10273347 10273366 GATTGTTCGCTATATGCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3099 FBgn0030145 FBtr0071365 1 1 1 60 X 9514513 9514532 TCTATCGCAAACTAGAGTCC 58 9514554 9514634 ATGTGCAGTTTAAGCTTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 amx FBgn0000077 FBtr0071331 2 1 1 60 X 9140509 9140527 CTATTCCGTACCAACTGCA 59 9140467 9140485 TAAAGGATCGATTGCCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7065 FBgn0030091 FBtr0071299 1 1 1 114 X 9038972 9040050 CCTTCAAAGGTACCAACGA 59 9040128 9040146 AAAGCATTGGCCAATTTGG 59 NA Drosophila melanogaster 50 CG15343 FBgn0030029 FBtr0071178 1 1 1 60 X 8166948 8166967 CCAGATGTTAAGGATAAGGC 57 8166907 8166925 TGGCTCCAATCAATCTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fz4 FBgn0027342 FBtr0071018,FBtr0071017 3 2 2 166 X 7002382 7002400 CTTTCAAACGTCAGCAGTG 59 7002172 7002190 CCAAATAGCCGGAGATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100214,FBtr0100200,FBtr0100205,FBtr0100201,FBtr0100206 1 5 15 191 X 6982728 6982746 GAAAGACACTCACTGACTC 57 6979978 6981655 ATTCTGTATCCATTCCGGA 57 NA Nonspecific, InUTR Drosophila melanogaster 50 CG14435 FBgn0029911 FBtr0071042 2 1 1 83 X 6735741 6735760 ATAAGTTTGTGTTGCCAGAC 58 6735599 6735698 GTACGTCCTCGTTATATGAGAG 59 NA Drosophila melanogaster 50 CG12543 FBgn0029872 FBtr0070919 3 1 1 94 X 6378101 6378119 GTTTGTGGTCGATAACGGA 59 6377948 6378045 CAAAGTGTCCTGAAATAGCTG 59 NA Drosophila melanogaster 50 Marf FBgn0029870 FBtr0070909,FBtr0070910 2 2 3 125 X 6263370 6263389 TGGAGTTTAAGTTCAGCTGG 59 6263476 6263564 ATACGCTGTGTCCAATACTG 59 NA Drosophila melanogaster 50 CG3726 FBgn0029824 FBtr0070858 3 1 1 138 X 5835115 5835201 TAAGCATCCTTACAGTGGC 59 5835303 5835375 GTAGGGATTGGTTTGGACC 59 NA Drosophila melanogaster 50 CG4078 FBgn0029798 FBtr0070807 1 1 1 80 X 5644998 5645103 ACTCAAATGTCTCGAGTATCG 59 5645145 5645163 GCTTGTGAATCTTCACCAG 58 NA Drosophila melanogaster 50 CG15784 FBgn0029766 FBtr0070777 1 1 1 70 X 5326030 5326048 TTTGGTCCACATCATGGTC 59 5326082 5326100 GGAACGTCAAAGAATGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3009 FBgn0029720 FBtr0070688 3 1 1 154 X 4554210 4554299 CACAGATCGTGGTGATATCC 59 4554075 4554093 GATAGATGAAGCCCAGTCC 59 NA Drosophila melanogaster 50 CG15240 FBgn0029684 FBtr0070628 1 1 1 78 X 3804820 3804838 ATCAAGTACTGTTCCCTGC 59 3804760 3804778 GTTGCTGATTCTTGAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hr4 FBgn0023546 FBtr0100515 1 1 1 169 X 1896185 1896279 AAACAAAGAAGTGGAACTGG 58 1896517 1896535 AGAACATCTTGCTCTCGAG 59 NA Drosophila melanogaster 50 CG14818 FBgn0026088 FBtr0070364 3 1 1 148 X 1773492 1773511 AACAATCATGATCCCTCGTC 59 1773302 1773320 GACATAATGTCGTCTGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40195 FBgn0058195 FBtr0113828 3 1 1 60 U 1047726 1047744 CGAATTGGGAACGATAACG 58 1047684 1047703 ATCTATTTCCTCTGAAGGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40267 FBgn0058267 FBtr0113851 3 1 2 105 U 367323 367342 GCAGTACCGGAATATTAACC 58 326527 367255 ACGCCGTTTAGTCTTACAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG32016 FBgn0052016 FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232 3 6 6 146 4 974515 974656 CTACTCTCAAGAATTGCATTCG 59 974390 974408 CTTGGTGATTGCGTATCCT 59 NA Drosophila melanogaster 50 CG11231 FBgn0039939 FBtr0089242 1 1 1 60 4 820363 820381 TTCTAAGCCTTGCTCTTCC 59 820405 820423 TTGATAGCTGTGTTTGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 1 8 8 80 4 671649 672942 CTAACAGCACAGATTGATGG 58 671588 671606 CAAATACGGGTGAAAGCTG 59 NA Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131 3 5 5 84 4 372565 372585 CGATATACCACAACATGTTGG 59 372445 372522 GTGTCCAGCCATTATATTTGAG 59 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156 1 8 10 80 4 115558 115579 ACGAGATAACTATGGTTACGTG 59 115618 120041 ATATTATTGCCTCCCGAATCC 59 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156 1 8 10 80 4 115558 115579 ACGAGATAACTATGGTTACGTG 59 115618 120041 ATATTATTGCCTCCCGAATCC 59 NA Drosophila melanogaster 50 CG15545 FBgn0039806 FBtr0085719 3 1 1 61 3R 26697687 26697705 AAGAAGAGCCACTACAGAC 58 26697561 26697580 GAATTGTAGCGTTGTTCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 jdp FBgn0027654 FBtr0085682,FBtr0085681,FBtr0085683 2 3 3 97 3R 26345482 26348964 TTCCAGCAGTTAAAGGAGG 59 26345403 26345421 TTGTAGCTCATCGAGATGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31038 FBgn0051038 FBtr0085498,FBtr0085499,FBtr0085497,FBtr0085494 3 4 6 72 3R 25723358 25727914 GAAGGAAATGAACGGACTG 58 25727950 25727968 GATCGATTCGTTAAGCACC 58 NA DesignRelaxed Drosophila melanogaster 50 CG31033 FBgn0039705 FBtr0085530,FBtr0085529,FBtr0085528 1 3 3 80 3R 25653846 25653866 CATATGCTCTGTAAGAGACGA 59 25653707 25653804 TGTTCGTTTGTAAACGTGG 58 NA Drosophila melanogaster 50 CG18731 FBgn0042213 FBtr0085459 3 1 1 64 3R 25551066 25551084 CAATCAGCCTACGATAAGC 58 25551112 25551130 GTTCAGTCATGAAAGCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dmrt99B FBgn0039683 FBtr0085454 1 1 1 121 3R 25518816 25518834 CAAATGCACTCTAATCGCG 59 25519205 25519223 CAGGAACCGAAGTGTAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 ppk20 FBgn0039676 FBtr0085466 2 1 1 80 3R 25493362 25493380 TTCCTGTACAACCACAGAG 58 25493157 25493235 GTAGCTGAAGATGTCATTGTG 59 NA Drosophila melanogaster 50 Trc8 FBgn0039668 FBtr0085430,FBtr0085432,FBtr0085429 3 3 4 98 3R 25327494 25327512 TGTCCAACTTTGGACTGTC 59 25327200 25327434 CTTGGATTAGTCTGATGGTCC 59 NA Drosophila melanogaster 50 Trc8 FBgn0039668 FBtr0085430,FBtr0085432,FBtr0085429 1 3 4 96 3R 25327494 25327512 TGTCCAACTTTGGACTGTC 59 25327202 25327435 TGGATTAGTCTGATGGTCCA 59 NA Drosophila melanogaster 50 SP1029 FBgn0040282 FBtr0085400,FBtr0085398,FBtr0085399 2 3 3 106 3R 25071030 25071112 TACAAGTTCTACCATCCGC 59 25070942 25070961 TTCACGAAGTCCTTGAACTC 59 NA Drosophila melanogaster 50 CG14509 FBgn0039647 FBtr0113303,FBtr0113304 3 2 2 148 3R 25004532 25006889 CAGAGTTCGATTATGCCAG 57 25004402 25004420 GTCATAGTGATTGGTGACG 57 NA Drosophila melanogaster 50 beta4GalNAcTB FBgn0039625 FBtr0085419 1 1 1 60 3R 24859466 24859484 AGGTGACCAGAAATGTCTC 58 24859424 24859442 GCAATGATCTCCGAGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31048 FBgn0051048 FBtr0085327 2 1 1 88 3R 24692468 24692545 GTCTATACCACGAGATCCT 57 24692597 24692615 GTATAAATGAGCCAGCTCC 57 NA Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 2 7 8 82 3R 24639657 24639675 TACTGCTACGGATATTGGC 58 24639721 24640880 CGCTCAAACACCTTATAGC 58 NA Drosophila melanogaster 50 Or98a FBgn0039551 FBtr0085226 3 1 1 81 3R 23672840 23672920 ATATTAAGGTGGCTAAGCTGG 59 23672960 23672981 CAGTTCTTTGTCAATCTGTCAG 59 NA Drosophila melanogaster 50 CG12877 FBgn0039544 FBtr0100446 2 1 3 97 3R 23535930 23536006 CTACAATACGACCTACTCGG 59 23536066 23536084 CATGGAACATGGACATCAG 58 NA Drosophila melanogaster 50 Cpr97Ea FBgn0039480 FBtr0085136 1 1 1 84 3R 22909614 22909695 AACCCTATCGTGTTCAACG 59 22909548 22909567 ACCTCGTATTGCACATACTG 59 NA Drosophila melanogaster 50 CG14254 FBgn0039469 FBtr0085075 1 1 1 60 3R 22821472 22821490 AGCAAGATATCGTGATCCC 58 22821514 22821532 AAGTAAACCTCTGGCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6403 FBgn0039453 FBtr0085044 3 1 1 72 3R 22561681 22561699 AAGTTCTACTTCTGCCTGG 58 22561627 22561648 CGTTGTTCACGAAATAGTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5476 FBgn0039441 FBtr0085031 3 1 1 169 3R 22458430 22458448 CAATTGGGAGGATCCTCTC 59 22458581 22458599 GAAAGCTATGGCACTTCCT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Hex-t1 FBgn0042711 FBtr0085010 1 1 1 60 3R 22274934 22274953 TGTTCAATCCGAGCATAGAC 59 22274975 22274994 GTAATCTCACGATCCATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14540 FBgn0039398 FBtr0084948 3 1 1 148 3R 21786302 21786388 GAACAAGTCATTAGCAAGGT 58 21786499 21786517 GAAAGACTCAGCATTTCCT 57 NA Drosophila melanogaster 50 MED28 FBgn0039337 FBtr0084836 2 1 1 70 3R 21303056 21303074 TCAAGGACGAGAATCAGGA 59 21303108 21303126 ATTGTAGTGCTTCTGCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11889 FBgn0039308 FBtr0100614 3 1 1 60 3R 21098618 21098636 TCTTCCATCAGCAGTTCAG 59 21098717 21098735 TCAAAGATCAGTGATGCGA 58 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 ssh FBgn0029157 FBtr0084800,FBtr0084799 2 2 2 163 3R 20769134 20769152 CTCTTAAGGATATCCCGCC 58 20768924 20769007 CTTGACAGCCATCTTTAGC 58 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625 1 8 17 81 3R 20521108 20521126 GACGCTGATCAAGAAATGC 59 20521842 20528756 ACGAGTGATATCACCTAAGTC 58 NA Drosophila melanogaster 50 Syx18 FBgn0039212 FBtr0084670 3 1 1 61 3R 20450762 20450781 GTGGAACAGATCTATCTGGA 58 20450720 20450739 CTATAGGTTTCCAGTTCGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsc1 FBgn0026317 FBtr0084546 2 1 1 86 3R 19956786 19956865 TAAGCTTATGACGCACGAG 59 19956915 19956933 GAATTCGGTATGATCGGCA 59 NA Drosophila melanogaster 50 CG5902 FBgn0039136 FBtr0084501,FBtr0084502 1 2 2 191 3R 19812925 19813001 AGTAGCAGAAGACGATTAGAG 58 19813154 19813172 TTGTTGTAGTGGGAGTTGG 59 NA InUTR Drosophila melanogaster 50 Gdh FBgn0001098 FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498 3 4 4 98 3R 19763339 19763461 AAGCTAAGATCATTGCCGA 59 19763259 19763277 TGTACAGATCGGGAATGAC 58 NA Drosophila melanogaster 50 unk FBgn0004395 FBtr0084403,FBtr0084402 1 2 2 143 3R 18981726 18981806 TACAAGTACAGGTCCACTC 57 18981601 18981619 GGTCGACTTGTAGATCTCC 58 NA Drosophila melanogaster 50 CG13841 FBgn0040588 FBtr0084316 1 1 1 81 3R 18593148 18593234 GAATTTCACATCAGGGAAGC 59 18593086 18593104 GTTCCTCGTCAGATTCCTC 59 NA Drosophila melanogaster 50 CG6455 FBgn0019960 FBtr0084188 1 1 2 140 3R 17847984 17848135 ATCACCTACGCCAAATACG 59 17847862 17847880 ATCGATCTGATCGTTGACG 59 NA Drosophila melanogaster 50 CG33092 FBgn0053092 FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144 3 7 7 268 3R 17705102 17705177 AGGACTTTCGGGATTTGTG 59 17705407 17705427 AGGTACCAGTGAAGTTAATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG10825 FBgn0038860 FBtr0084015,FBtr0113258,FBtr0084014 2 3 3 60 3R 16957351 16957370 GACATTGAAGATGGCAACTG 59 16957393 16957411 CGCCTTTACATCTAAGGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5077 FBgn0038786 FBtr0083878,FBtr0083880,FBtr0083881,FBtr0083879 2 4 4 194 3R 16148680 16148698 TCCATCGAGACATTATCCC 58 16148855 16148946 CAAAGCAAGTTGCTTAATGG 58 NA Drosophila melanogaster 50 CG4854 FBgn0038766 FBtr0083830 2 1 1 85 3R 15854484 15854503 AACAATGTCTACTCAGAGCG 59 15854551 15854634 TGACAGATTTCGCATTCGT 59 NA Drosophila melanogaster 50 CG4572 FBgn0038738 FBtr0083861,FBtr0083860,FBtr0083862 3 3 3 60 3R 15688808 15688826 TGGGCAATAAGACATTCCA 58 15688766 15688785 TTCTTCAAGTGAAGTTCCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dys FBgn0024242 FBtr0110918,FBtr0110917,FBtr0083764,FBtr0110919 1 4 8 80 3R 15310655 15310768 GATAGTGATACGAGTCGCA 58 15310812 15310830 AGACAATGATTCCAGGACC 58 NA Drosophila melanogaster 50 CG5835 FBgn0038682 FBtr0083751 2 1 1 118 3R 14977295 14977313 TTTAAACAAACCGCAGACG 59 14975339 14977213 AATCGTCGGAAGTATCCTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14286 FBgn0038673 FBtr0083710 3 1 1 78 3R 14850207 14850226 AATCAAATTCACACCTACGG 58 14850267 14850285 CTTTCCAGATGACAGAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14298 FBgn0038654 FBtr0083695 2 1 1 62 3R 14702462 14702481 AATTTCAACTGCTATGTGGG 58 14702506 14702524 CTTGGTCTGATCCTTCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7709 FBgn0038642 FBtr0083687 3 1 1 62 3R 14518022 14518040 ATCTCAAAGAAGCAGCTGG 59 14516621 14516639 TTGATGAGCTTCGAATGCA 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 fray FBgn0023083 FBtr0083638,FBtr0083637 1 2 2 60 3R 14413756 14413775 TTGCTCAATTACCACTACCT 58 14413798 14413816 AGGACAAGATTGACTGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7685 FBgn0038619 FBtr0083630 2 1 1 130 3R 14231128 14231147 GATCCCATCAAGATTGTCAG 58 14231303 14231321 CAGTAGTTGTCGTTCAGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG5823 FBgn0038515 FBtr0083505 2 1 1 67 3R 13358994 13359012 CACCATTCTCACTGGACTG 59 13358885 13358903 ATGATTCGATGGATCCGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5148 FBgn0038478 FBtr0083400 1 1 1 60 3R 12915293 12915311 CATTGCCAATAGCTCAACC 59 12915332 12915353 CTGGGTCAAATGATTACTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3983 FBgn0038473 FBtr0083426,FBtr0083425 1 2 2 80 3R 12897403 12897422 GAGCTCCATCATAAACTCGT 59 12897280 12897361 TCTTGCATTGATTTGGTCAC 59 NA Drosophila melanogaster 50 Fas1 FBgn0000634 FBtr0083333 3 1 4 111 3R 12458490 12461276 GTCGTTCAAGGAGAATGCT 59 12461351 12461369 AATGGTCACTTCTGTCAGG 59 NA Drosophila melanogaster 50 CG17562 FBgn0038449 FBtr0083329 3 1 1 90 3R 12442647 12442725 CATTAAGCGTTTAAAGCTGC 58 12442778 12442796 TAGGATCCTTACCAACGAC 58 NA Nonspecific Drosophila melanogaster 50 CG10340 FBgn0022344 FBtr0083358 2 1 1 60 3R 12439333 12439352 CGACACTAAGGTACTCACAG 59 12439292 12439311 GAACATCTGCAACTCATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 decay FBgn0028381 FBtr0083304 3 1 1 183 3R 12325640 12325658 AACTCTTCTTCATCCAGGC 59 12325170 12325496 GAGAAGAATTTGTCGAATGTGG 59 NA Drosophila melanogaster 50 CG6654 FBgn0038301 FBtr0083139 2 1 1 102 3R 11038057 11038075 ATACGCTGTGATTCCAAGG 59 11037918 11037993 GCATGGTGAATACTTTCTGAC 59 NA Drosophila melanogaster 50 CG14860 FBgn0038273 FBtr0083002 2 1 1 69 3R 10721196 10721214 TTCAAGAGCGAGGATTCTG 59 10721246 10721265 CGCATGGATTATTATGAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eff FBgn0011217 FBtr0083018 2 1 1 119 3R 10560129 10563151 GGAGATGATTTATTTCACTGGC 59 10559528 10559546 TTTGGGTGGTTTAAAGGGA 58 NA Drosophila melanogaster 50 primo-1 FBgn0040077 FBtr0091749,FBtr0091747 1 2 3 104 3R 9536371 9536453 TTTGTTTGGGCAACATCTG 59 9536285 9536303 CAATTGCTGCACTATCGAC 59 NA Nonspecific Drosophila melanogaster 50 primo-1 FBgn0040077 FBtr0091747,FBtr0091748 3 2 3 145 3R 9536154 9536172 ATTCGACTACATCTTCGGC 59 9535872 9536045 GCTCATAGTAGGGATCCTC 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Adgf-C FBgn0038173 FBtr0082821 2 1 1 168 3R 9534286 9534359 AGAGACCAATTGGTTTGGT 59 9534491 9534509 CACCTGATTCGAAATGGGA 59 NA Drosophila melanogaster 50 CG9813 FBgn0038143 FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767 2 6 6 120 3R 9199920 9200008 TGGCAAAGGTAATGTTTGC 59 9199818 9199836 AAGTCGATGGGTATGACAC 59 NA Drosophila melanogaster 50 CG8774 FBgn0038136 FBtr0082740,FBtr0082741 3 2 2 136 3R 9125212 9125230 TAACTTTGACGGAAGAGCT 58 9125330 9125482 AGAAATGGTTCTGGTAGCT 58 NA Drosophila melanogaster 50 beat-Vc FBgn0038084 FBtr0082658 1 1 1 63 3R 8578160 8578178 TCAAGCTGATCGATCAGAC 59 8573261 8573279 ATGAACGGATCGAATTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 trus FBgn0038055 FBtr0082634 1 1 1 115 3R 8283515 8283533 ATGAGAACGAGTCCTACGA 59 8283612 8283689 CGTATCCCGCGAATATCTC 59 NA Drosophila melanogaster 50 CG3313 FBgn0037980 FBtr0082555 3 1 1 82 3R 7841240 7841258 AGCCGGAAAGTATTTGGAG 59 7841112 7841194 CCTCCGGATACACAATTCC 59 NA Drosophila melanogaster 50 CG12213 FBgn0037968 FBtr0082510 2 1 3 180 3R 7792356 7792376 ACTATGTACCTAAAGTCCAGC 58 7791995 7792214 GATTTGGGCACAATTTGCA 59 NA Drosophila melanogaster 50 CG6962 FBgn0037958 FBtr0082516 3 1 1 121 3R 7706267 7706286 ATAAGAAGATCTTTGGCGAG 57 7706106 7706184 CGCTTGATCAACATTAAACG 58 NA Nonspecific Drosophila melanogaster 50 HisCl1 FBgn0037950 FBtr0082470 3 1 3 157 3R 7614595 7614614 CTATAGACGTCTGGATGTCG 59 7614734 7614804 TAGTGCAGACTTTAGGTCG 58 NA Drosophila melanogaster 50 Fer3 FBgn0037937 FBtr0082435 1 1 1 60 3R 7519514 7519532 CTACGAGAAACGACTGTCC 59 7519472 7519491 GAATCCGATGTAGGTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6325 FBgn0037814 FBtr0082260 2 1 1 82 3R 6230155 6230175 CACAAAGAAGCTAAGAAGACG 59 6230029 6230111 GTGATATGCAGTCGTCCTC 59 NA Drosophila melanogaster 50 jumu FBgn0015396 FBtr0082237 3 1 1 81 3R 6185608 6185686 CTTCGATATAGAGGTCGGG 58 6185731 6185749 ATTCGAGATAATTCGACGC 57 NA Drosophila melanogaster 50 tws FBgn0004889 FBtr0082186,FBtr0082187 2 2 8 87 3R 5955361 5960551 GAAGCCAGCAAGTAATGGA 59 5955292 5955310 TATGATGTCTGCATCCGTG 59 NA Drosophila melanogaster 50 CG9746 FBgn0037663 FBtr0081986 3 1 1 82 3R 5068878 5068896 ATCACGTGTTCGTAGTCAG 59 5068759 5068834 GTCTAAAGAGATTACGCAAGG 58 NA Drosophila melanogaster 50 CG11963 FBgn0037643 FBtr0113206,FBtr0081957 3 2 2 122 3R 4767443 4767462 CATTCTGGTCAACATCTTCG 58 4767547 4767633 ACTTTGGTTCCCTGAAGAC 59 NA Drosophila melanogaster 50 pyd FBgn0003177 FBtr0089783,FBtr0089784,FBtr0112822 1 3 8 81 3R 4660661 4664121 AGTCTAAGGTACCCTACGA 58 4660598 4660616 TAGATGCTGTACTTGCTGG 59 NA Drosophila melanogaster 50 CG8112 FBgn0037612 FBtr0081904 3 1 1 249 3R 4539287 4539306 TATTCTGGTCATGTTCCTGC 59 4539893 4539911 GTACAGGATGAGACAGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2678 FBgn0014931 FBtr0081757 1 1 1 132 3R 3740984 3741640 CTATGCTAAAGCCGAAACC 58 3741736 3741754 AACTCCTCGGAACAATAGG 58 NA Drosophila melanogaster 50 pyd3 FBgn0037513 FBtr0081780 1 1 1 96 3R 3573996 3574014 TCTTCTTATGTCGCAGCTC 59 3573858 3573876 GACACAGGTTCAGATCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Antp FBgn0000095 FBtr0081648,FBtr0081652,FBtr0081651,FBtr0081649,FBtr0081650,FBtr0081647,FBtr0081656,FBtr0081654,FBtr0081653,FBtr0081655 2 10 11 256 3R 2734436 2734454 CAGAACCATCACAACATGG 58 2724212 2724230 AGCTCTAGAGTCTGGTACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14676 FBgn0037388 FBtr0078645 3 1 1 60 3R 1673330 1673348 TCTACAAGCTCTTCTTCGT 57 1673371 1673390 TGCAGATATTCCCTGATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1213 FBgn0037387 FBtr0078643,FBtr0078642,FBtr0078644 1 3 3 64 3R 1671125 1671143 GATGCAGCTCTTCATTGTG 59 1671243 1671261 GGTATGAAACATACGGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG31551 FBgn0051551 FBtr0078706 2 1 1 60 3R 1456841 1456859 CATGAAGAATCAGAGCAGG 57 1456883 1456901 TAGAGTGTGAACTTGGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0110933,FBtr0078809,FBtr0078810,FBtr0100199 3 5 15 83 3R 1139715 1139734 TCCAGCAAATCCGATAAGAG 59 1139211 1139672 GGTGGAGTTCTTACTACTATCC 59 NA Drosophila melanogaster 50 Cdep FBgn0051536 FBtr0110958 2 1 2 80 3R 749540 751276 AACTTCCAAAGGTCTCAGTC 59 751318 751337 GGAATTCACATACGTATGCG 59 NA Drosophila melanogaster 50 laf FBgn0020280 FBtr0078852 2 1 1 67 3R 702550 702568 AGGTCTCCAGTAAGGAAGG 59 702424 702442 GACAAGCTCTTGCTTATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31523 FBgn0051523 FBtr0078938,FBtr0078935,FBtr0078936,FBtr0078937 1 4 4 91 3R 293417 293436 ATTTCTACTACATGATCGCC 57 293286 293364 GAATTGAACCATTTGGAAGG 57 NA Drosophila melanogaster 50 CG9855 FBgn0037242 FBtr0078950 2 1 1 150 3R 222520 222596 TATTTATCCGAACCTCAGCC 59 222389 222407 AAAGAGAATACGTCCCACG 59 NA Drosophila melanogaster 50 CG9776 FBgn0027866 FBtr0078955 1 1 2 141 3R 153970 153990 AGAAGCAAGCTGATATCTCAG 59 153730 153867 TACAGAGCATATTGTGCCG 59 NA Drosophila melanogaster 50 snRNA:U12:73B FBgn0041721 FBtr0075315 2 1 1 65 3L 16646871 16646891 GCCTCAAACTAATGAGTAAGG 58 16646918 16646936 CTAGAAGCCAATACTGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40470 FBgn0058470 FBtr0111152 2 1 1 80 3L 23927591 23927671 ATGAACCAGGAATAAAGGTCC 59 23927531 23927551 GCAGAGGCGTATTAAATAGTG 58 NA Drosophila melanogaster 50 CG17698 FBgn0040056 FBtr0111168,FBtr0111167 1 2 3 162 3L 23734173 23739296 CAAATTGGACAGGGATCCT 59 23739420 23739440 TGTAAACTCGATCTAGAGGTG 58 NA Drosophila melanogaster 50 nrm FBgn0005629 FBtr0111148 1 1 2 110 3L 23017169 23017187 TATCATACTGGTTGCTGCT 58 23017259 23018195 TCCGTGAGATATTTATCCTGG 58 NA Drosophila melanogaster 50 CG33771 FBgn0053771 FBtr0091772 3 1 1 60 3L 22642929 22642947 CTACTACATGCACGACTGG 59 22642969 22642989 GCCAGGAATAAGAAACTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-ile FBgn0027086 FBtr0078500,FBtr0078499,FBtr0078498 3 3 3 107 3L 22283343 22283418 CAGAGATTGGGCTATCTCC 58 22283489 22283507 GCTAACTGCTTGATACTGC 58 NA Drosophila melanogaster 50 RpLP0 FBgn0000100 FBtr0078481 3 1 1 66 3L 22069391 22069409 GTTAGGGAGAACAAGGCAG 59 22069439 22069531 ACTCATCGAACAGTTCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 Syn1 FBgn0037130 FBtr0078450 3 1 2 170 3L 21753270 21753288 CATCTCGAAGATCTTCCGG 59 21741289 21753137 CGCAGGAATTTAACTTCCAG 59 NA Nonspecific Drosophila melanogaster 50 CG32447 FBgn0052447 FBtr0078460,FBtr0078461 2 2 2 184 3L 21687566 21687584 TTCTGCTATTATCCTCCCG 58 21686806 21687418 GGTCGTATAAACATGCCTG 58 NA Drosophila melanogaster 50 CG32447 FBgn0052447 FBtr0078460,FBtr0078461 2 2 2 184 3L 21687566 21687584 TTCTGCTATTATCCTCCCG 58 21686806 21687418 GGTCGTATAAACATGCCTG 58 NA Drosophila melanogaster 50 CG3947 FBgn0037019 FBtr0078278 2 1 1 60 3L 20770574 20770595 CGACTTCAAGCTTCATATAGAC 58 20770535 20770553 GAGTTTCCTCGGAATTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6996 FBgn0036950 FBtr0074822 1 1 1 60 3L 20201146 20201164 GACTGGACTCTTCTACGAC 58 20201185 20201206 ACACTTGATACTACTGGAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ac76E FBgn0004852 FBtr0074897 1 1 1 82 3L 19966657 19966744 GTAATCGAATTGAACCTGGC 59 19966789 19966807 ATGTTGCTCAGGTAGAGGA 59 NA Drosophila melanogaster 50 pip FBgn0003089 FBtr0075008 3 1 11 85 3L 19297288 19297306 ATAACCCTGACTGTTCTCG 58 19297155 19297173 GTGATCTTGCTATTGTGCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG9666 FBgn0036856 FBtr0074991 3 1 1 155 3L 19258403 19258421 GTGGGAGAAGTCCTTTGAC 59 19258540 19259708 TTCTGAATGTACGACCGTG 59 NA Drosophila melanogaster 50 CG18135 FBgn0036837 FBtr0075044,FBtr0075043,FBtr0075042,FBtr0075045 3 4 4 60 3L 18984759 18984777 CAGACATGATCGAGTTGGA 59 18984717 18984735 TCGTGATAAATCACAGGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32192 FBgn0052192 FBtr0075146,FBtr0075147 3 2 2 239 3L 18033710 18033728 TGATATTGTACGCTTCGGA 58 18034086 18034105 GAGAATATCCAACTCTGCTC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Jon74E FBgn0023197 FBtr0075207 1 1 1 80 3L 17541554 17541659 ATGAATGACGAATCCACTG 57 17541492 17541511 GTATTCACAGTCCTCATTGG 57 NA Drosophila melanogaster 50 CG13059 FBgn0036607 FBtr0075371 3 1 1 103 3L 16317193 16317211 CTTAAGACTGTGGTCTCCT 57 16317278 16317296 ATCACGGTCTTGATAACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5284 FBgn0036566 FBtr0075444,FBtr0075445 2 2 2 82 3L 16087580 16087598 TTATCCGTTCCTAGACAGC 58 16087644 16087720 AAGTTTCATTCCGCTTTGG 58 NA Drosophila melanogaster 50 CG7304 FBgn0036527 FBtr0075576 2 1 2 87 3L 15673901 15673978 AATCAAGGAACCTGAAACG 57 15674029 15674047 ATATTCAGGAGATGTGGCT 57 NA Drosophila melanogaster 50 AGO2 FBgn0046812 FBtr0075560,FBtr0075559 2 2 2 84 3L 15551210 15551360 AAGTGACTGTGACAGATCG 59 15551407 15551426 TTAAGGTCAATGGTCGAGTC 59 NA Drosophila melanogaster 50 CG18581 FBgn0036466 FBtr0075666 2 1 1 70 3L 15043002 15043020 GAAACTCACAGTCCTACGG 59 15042950 15042968 TCATCTTCGAAGAACTCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9384 FBgn0036446 FBtr0075690 1 1 1 285 3L 14756185 14756203 AAGAACATAGCTTTCCGGG 59 14757032 14757050 ATCTTGAACATCGTTCGCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100042,FBtr0100039,FBtr0100040 3 3 6 60 3L 14206288 14223280 TGACTACGATTATAGGCTGGA 59 14223301 14223320 CTGTGTATCTGACAGATCGT 58 NA DesignRelaxed Drosophila melanogaster 50 stv FBgn0086708 FBtr0075806,FBtr0075809,FBtr0075807 3 3 5 83 3L 13474163 13474181 GACATGGACAACATGTTCC 58 13474228 13474324 GAAACCAAAGTGTGAGTCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG32117 FBgn0052117 FBtr0075905 1 1 1 60 3L 12896340 12896358 TACATAGCCATGAAACGCA 59 12896298 12896316 AGATCTTCGGTTTGGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32108 FBgn0052108 FBtr0075933 2 1 1 96 3L 12816013 12816092 GAAGGTATGTGAATATGTAGGC 58 12816148 12816167 ACATAGCAGGTATTGACTCG 59 NA Drosophila melanogaster 50 ara FBgn0015904 FBtr0075908 2 1 1 239 3L 12587398 12587416 AAGGGTGAGAAGATCATGC 59 12587618 12587699 CTCTTTGGTCTCATCTTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG32092 FBgn0052092 FBtr0076082 2 1 1 80 3L 11796385 11796513 GCGGTTAAATGAGACTATAACG 59 11796326 11796346 CAGAGACACTGAATACTTCCC 59 NA Drosophila melanogaster 50 Pi3K68D FBgn0015278 FBtr0076088,FBtr0076087 3 2 3 80 3L 11769204 11769284 ACTGTGATGATACACCACG 59 11769142 11769163 TAGGTAGCACTTCACATATGTG 59 NA Drosophila melanogaster 50 Mob1 FBgn0036172 FBtr0089331,FBtr0089330,FBtr0089333,FBtr0089332 2 4 4 160 3L 11520315 11520333 CTAGTGGATCTTCCAGCTG 59 11518602 11518687 CATAAGTACGTTCTGTTGCC 58 NA Drosophila melanogaster 50 CG14160 FBgn0036066 FBtr0076316,FBtr0113160 3 2 2 234 3L 10082166 10082184 CTAATGTGGAAATACCGCC 58 10081408 10081906 CACTGGAGGTATATGCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385 1 8 8 111 3L 9825956 9826035 GAGTTAACCGGGACTACAC 59 9826110 9826128 CTTTCCCAAACTTAGCCGA 59 NA InUTR Drosophila melanogaster 50 Hsp23 FBgn0001224 FBtr0076453 1 1 1 60 3L 9375423 9375442 TCATCACTCGTCACTTTGTC 59 9375464 9375483 ACCTTATCAGCCTCATAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5026 FBgn0035945 FBtr0076516,FBtr0076515 3 2 2 122 3L 8963883 8963901 GTCTTATTTGAACCGGCCT 59 8963985 8964058 AAATAGAGATCACTCCACAGC 59 NA Drosophila melanogaster 50 Tsp66E FBgn0035936 FBtr0076507,FBtr0076508,FBtr0076506 1 3 3 84 3L 8919887 8921127 GCATTGAGCAATTTACACAG 58 8921174 8921192 CTCATGAAGAACATGACGG 58 NA Drosophila melanogaster 50 Prm FBgn0003149 FBtr0076593,FBtr0076594 1 2 4 143 3L 8732792 8732810 CATCATCCTGTACGAGACC 59 8732582 8732686 TCATGAAGATCATCTCCCAG 58 NA Drosophila melanogaster 50 CG17352 FBgn0035880 FBtr0076675 3 1 5 141 3L 8346692 8346710 AAAGGGATCAAGAACAGCC 59 8346517 8346588 AAGTGGGACTCACAAATAGC 59 NA Drosophila melanogaster 50 CG8541 FBgn0035788 FBtr0076862 2 1 1 61 3L 7464934 7464955 ATACACTCCTGCTATTAAGACG 59 7464977 7464995 GAGTAGCCTGAGTGTACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14821 FBgn0035719 FBtr0076895,FBtr0113150 1 2 2 220 3L 6939646 6940353 GAAGATTGATGAGGGTCCC 59 6940537 6940555 TAGAAGGCTGAATCAGCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 tan FBgn0028980 FBtr0077043 2 1 1 63 3L 6048716 6048734 CATAGTCTACGACTTTGCC 57 6048761 6048832 GTTAGTAGTGGGTGACCTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG10477 FBgn0035661 FBtr0077068 2 1 1 60 3L 6027462 6027480 ACATGGGTACTAACTGCTG 58 6027368 6027386 CATAGTAGATGGTCACGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32407 FBgn0052407 FBtr0077032 1 1 1 96 3L 5916305 5916323 ATCAAGAGCATCATCGGAG 59 5916383 5916464 TAAAGGCAGCATCTAGCAG 59 NA Drosophila melanogaster 50 PGRP-LD FBgn0035635 FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577 1 4 4 107 3L 5775936 5776021 TGCATAAGCTGGAAAGGTC 59 5776092 5776110 GATACTGGCTCCGATAGTG 59 NA Nonspecific Drosophila melanogaster 50 CG10576 FBgn0035630 FBtr0077121,FBtr0077122 3 2 2 211 3L 5757777 5757795 CTGACTACACGTTAAAGGC 58 5756865 5757540 GAGGGAGTAGTTATTGGCG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Ubp64E FBgn0016756 FBtr0077096,FBtr0077095,FBtr0077097 3 3 3 99 3L 5751686 5751765 GTGACTAGTATCACCCAAGAG 59 5751826 5751844 ACATGTATGCATTGGTGCT 59 NA Drosophila melanogaster 50 mthl2 FBgn0035623 FBtr0077088,FBtr0077087 1 2 2 80 3L 5599497 5599577 TCGGACAAACAGAATTACAC 58 5599617 5599638 GTAGGAGAATATCTCAAAGCTC 57 NA Drosophila melanogaster 50 CG10591 FBgn0035621 FBtr0077128 1 1 1 70 3L 5592287 5592307 GGGCAACATTATAGTGATTCC 58 5592237 5592255 AAATGTGGAAGAACTGAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Msr-110 FBgn0015766 FBtr0077131 2 1 3 188 3L 5566920 5568048 AATCATCAGGCCTACAAGC 59 5566750 5566768 AGTCTCAAGCATTAGCTCC 59 NA Drosophila melanogaster 50 shep FBgn0052423 FBtr0077173,FBtr0077174 1 2 4 143 3L 5160146 5161354 CAAATGTTACGGCTTCGTC 59 5157062 5160039 TCCTGTTCCTGTTGAATGG 59 NA Drosophila melanogaster 50 CG13722 FBgn0035553 FBtr0073329 2 1 1 74 3L 4487529 4487548 AAGCCAGAGCTACTTTACTG 59 4487417 4487435 GAATACCCATCGGTGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1295 FBgn0035509 FBtr0073222 3 1 1 85 3L 4204733 4204753 CACATTGAACTTGAACCTGAC 59 4205226 4205244 GATCGTACAGAGGCTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18869 FBgn0042179 FBtr0073204 3 1 1 144 3L 4060912 4060933 GCTATGTATACGATGATTCACG 58 4061038 4061122 ACTGCATAGCCAAGATGTC 59 NA Drosophila melanogaster 50 mge FBgn0035473 FBtr0073176,FBtr0073175 2 2 2 64 3L 3908527 3909017 AGAACTACGATGATGAGCC 58 3908481 3908499 GAACATCTCGGTTAGTCCC 59 NA DesignRelaxed Drosophila melanogaster 50 Awh FBgn0013751 FBtr0073156,FBtr0073155 2 2 2 132 3L 3860362 3860380 AGTATGGTTCCAGAACTCG 58 3860752 3860900 ATAGAGGATTCATGAGTCGG 58 NA InUTR Drosophila melanogaster 50 CG14967 FBgn0035420 FBtr0073099 2 1 1 85 3L 3214811 3214829 GAAATGGAGTTGACCTGGA 59 3214682 3214764 CGTACAGTCACATTAAGTTCC 58 NA Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 2 9 15 80 3L 3083796 3084813 TCGCCACTTATATGAATCGA 58 3084853 3084874 CCAAATTAAGTAGTGAGAACCC 58 NA Drosophila melanogaster 50 dlt FBgn0024510 FBtr0072790 2 1 1 60 3L 1791675 1791693 TCATCGGTAGCATTTCTGG 59 1791633 1791651 TGTTACGCATTAGTTGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12035 FBgn0035263 FBtr0072766 1 1 1 60 3L 1724860 1724878 TTACTATGGGCACTACGAG 58 1724902 1724920 AGTGTCCTTTAGCTTTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2199 FBgn0035213 FBtr0072721 3 1 2 62 3L 1341944 1341962 TAACAGACGTACTGGAGAC 58 1341834 1341852 ATATCTTGATGGGCAAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG33966 FBgn0053966 FBtr0100007 2 1 1 61 3L 1234875 1234893 TGATCAAGCCCATGATGTC 59 1234981 1234999 CCATTTGCTTCCATGAACG 59 NA DesignNoJunction Drosophila melanogaster 50 Glut1 FBgn0025593 FBtr0112910 1 1 6 80 3L 982229 982247 CTGCATCTCTATGGTCTGG 59 982289 983845 ACCAAAGAACTCCTTGATCAG 59 NA Drosophila melanogaster 50 CG13897 FBgn0035160 FBtr0072601 2 1 1 60 3L 738522 738540 GTGCACTCAAGATTGAAGC 59 738480 738498 ACTTGCTCGCTCTTAAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3344 FBgn0035154 FBtr0072609 1 1 1 71 3L 686599 686617 TACAGGTTGATGTCCAGAG 58 686493 686511 CACATCGAATTTCACGAGG 58 NA DesignNoJunction Drosophila melanogaster 50 pyx FBgn0035113 FBtr0072524 3 1 2 84 3L 222326 222344 AGGTTAAGGAAACCCTGAC 58 222207 222280 GTCATTAGTTCCAGGAAACAG 58 NA Drosophila melanogaster 50 Kaz1-ORFB FBgn0063923 FBtr0072488,FBtr0100851,FBtr0072493,FBtr0072490 1 4 6 110 3L 217695 217713 AGTACAATCCAATCTGCGG 59 217866 217884 GACAAATTCCCTTGTGCAC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 5SrRNA-Psi:CR33356 FBgn0053356 FBtr0086348 1 1 1 74 2R 15652639 15652657 TACCACGCTGAATACATCG 59 15652583 15652601 GTATTAAACGCGTACGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33433 FBgn0053433 FBtr0086425 1 1 1 62 2R 15624217 15624235 AATACATCGGTTCTCGTCC 59 15624173 15624191 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3570 FBgn0035035 FBtr0072317 3 1 1 91 2R 20491685 20491703 AATACGAGAACCTGAGCTG 59 20491757 20491776 TGTATTCCAGTAGCAAACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3253 FBgn0041706 FBtr0072251 3 1 1 85 2R 20003513 20003531 TACATAGCAGTGGACAACG 59 20003580 20003654 TGCATCTCATAAACCTGGG 59 NA Drosophila melanogaster 50 Adk2 FBgn0022708 FBtr0072163 3 1 1 184 2R 19912486 19912504 GAGATTTCATCCGGTTCGA 59 19912652 19912733 AATGTGTCGAGCTTCTCAG 59 NA Drosophila melanogaster 50 CG4585 FBgn0025335 FBtr0072227 3 1 1 69 2R 19750975 19750993 CTACCAGAACATGCTGGAG 59 19750924 19750942 CTTGAACACGTAATCCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11300 FBgn0034901 FBtr0072090 1 1 1 77 2R 19639867 19639887 CAACCAGAGTAATCAGAATGG 58 19639926 19639944 TACAATAGACGACGGTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11299 FBgn0034897 FBtr0113114,FBtr0113113,FBtr0072087 3 3 3 112 2R 19619396 19619414 CATTTACCAGGACTTTGCC 58 19619490 19619573 CATCGTTGTACAATCCGTC 58 NA Drosophila melanogaster 50 CG9899 FBgn0034829 FBtr0071969 3 1 1 93 2R 19048080 19048101 CGATCCAGAAGAATAATCACAC 58 19048155 19048260 CCCATATAGGTTCTGGCTG 59 NA Drosophila melanogaster 50 Art7 FBgn0034817 FBtr0114564 3 1 1 191 2R 18964705 18964723 CTGTGGGAATATCCCTGTC 59 18964477 18964496 ACTGCTTACAATGGATCTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Obp59a FBgn0034766 FBtr0071869,FBtr0071870 3 2 2 76 2R 18590239 18590257 CCTGCTGATTTGTTTGAGC 59 18590297 18590315 CTTCACTTAGTCCCTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13511 FBgn0034759 FBtr0071863 1 1 1 60 2R 18547460 18547479 GCTCTGACCTTGTATATCTG 57 18547559 18547578 AGTTGATGAAGTAGGGAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3045 FBgn0034703 FBtr0071787 2 1 1 80 2R 18061065 18061143 CATACAAATTCAGGCTACGAC 59 18061005 18061024 CATTATGCAACGGATTTGGT 59 NA Drosophila melanogaster 50 CG30392 FBgn0050392 FBtr0071618 2 1 1 109 2R 17179225 17179243 AGAACCATGCTGGATTACG 59 17179074 17179153 TCGTAGACAAAGTCAAGACC 59 NA Drosophila melanogaster 50 CG16742 FBgn0034529 FBtr0086227 3 1 2 98 2R 16511585 16511604 AAACAACCTTCGTATGTTCC 58 16511665 16511733 AATACGGTTGTTGAGTGGA 58 NA Drosophila melanogaster 50 Mgat1 FBgn0034521 FBtr0086259 3 1 1 80 2R 16448045 16448063 AAGCACATTAAACTGAGCG 58 16447926 16448004 GTTATCGTAATTGTCCTTCAGC 59 NA Drosophila melanogaster 50 CG13424 FBgn0034520 FBtr0086218 3 1 1 197 2R 16445732 16445907 GAAACGCAGATCAAGATCTG 59 16446067 16446085 CATAATGGACTGAATGGGC 58 NA Drosophila melanogaster 50 isopeptidase-T-3 FBgn0028372 FBtr0086473,FBtr0086474 1 2 2 118 2R 15559346 15559420 GCAGTCGAATATCCAATACG 58 15559501 15559519 AACGTTGCTTTAGCATAGC 58 NA Drosophila melanogaster 50 CalpA FBgn0012051 FBtr0086529,FBtr0112869 3 2 3 123 2R 15316872 15316890 CATCGATCCTCAGAAGGAG 58 15316977 15317053 TTTGGGTAAATCGTCCCTC 59 NA Drosophila melanogaster 50 CG18605 FBgn0034411 FBtr0086571 2 1 1 63 2R 14866001 14866019 GATGAAGATGGACGGACAG 59 14866046 14866064 AGGTGCATTAGCTTGTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18604 FBgn0034378 FBtr0086606 3 1 1 61 2R 14591366 14591384 TCCAGTAATGTCACTGCAG 59 14591521 14591539 TGATTGAAGGCATATCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG6459 FBgn0034259 FBtr0086892 2 1 1 189 2R 13559530 13559548 CAATGTGAACCATACGGTG 58 13559301 13559377 GAAGACATCGTTGTACTCG 57 NA Drosophila melanogaster 50 GstS1 FBgn0010226 FBtr0087005,FBtr0100258,FBtr0087006 2 3 3 121 2R 12981867 12981885 CATTCTACCTGGAGAAGCT 58 12981677 12981697 GACCATGTAGTTCATGTAGTC 57 NA DesignNoJunction Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 1 5 7 80 2R 11836644 11836723 CATTTGCTACGTGCTACTC 58 11836582 11836603 GCTCTAGTTATATTCGAGAAGG 57 NA Drosophila melanogaster 50 l(2)k05713 FBgn0022160 FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309 2 4 4 84 2R 11747749 11747767 GAACTTCCTCGAGATCCAC 59 11747608 11747702 TACTGCTCTAGATCTAGGCC 59 NA Drosophila melanogaster 50 Mtk FBgn0014865 FBtr0087386 2 1 1 132 2R 11296383 11296401 GCAACTTAATCTTGGAGCG 59 11296497 11296515 TTGGTTAGGATTGAAGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 chn FBgn0015371 FBtr0111007,FBtr0111006,FBtr0087415,FBtr0087416 3 4 4 113 2R 11025934 11026024 CAAATCTGCAACAACTCGA 58 11026101 11026119 GTTGCTGGATTACATTGGC 59 NA Nonspecific Drosophila melanogaster 50 Su(var)2-HP2 FBgn0026427 FBtr0087502,FBtr0087501 3 2 2 82 2R 10498986 10499139 AACAAGTTAAACCAGCTCG 58 10498922 10498940 TTCTGACTCCGTCTTTGAG 58 NA Drosophila melanogaster 50 Tfb1 FBgn0033929 FBtr0087548,FBtr0087549,FBtr0087550 2 3 3 106 2R 10251345 10251363 TAACCAGCGATGAGTTCTG 59 10251490 10251509 CTTTATGTCAGCCAGAAAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG8547 FBgn0033919 FBtr0087566,FBtr0087567 1 2 2 244 2R 10149672 10149993 AGTCATTCGGAACTACCAC 58 10149387 10149405 CTCGTACTCGTACATTCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13339 FBgn0033871 FBtr0087632 3 1 1 112 2R 9712740 9712758 GTGAAGTGGATCCAATGGA 59 9712833 9712852 AACTATGTTGAGGATGTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6016 FBgn0033844 FBtr0087699,FBtr0087700 2 2 2 98 2R 9379089 9379168 TTCTTCCAGTGCTTCTGTG 59 9379009 9379028 CTCTGTCACATCAATTCTGC 58 NA Drosophila melanogaster 50 CG4679 FBgn0033816 FBtr0087759 1 1 1 60 2R 9125033 9125051 AGAACCAGCACAGAATTCC 59 9124991 9125010 GCGTCCACAAATTCTATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4627 FBgn0033808 FBtr0087738 3 1 1 61 2R 9103016 9103035 CGCTACAAACTCCTTAATCG 58 9103058 9103077 AAGAGACCCTCAAACAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13324 FBgn0033789 FBtr0087796 2 1 1 134 2R 8937018 8937036 AACGATTTCCTCCTCTCAC 58 8936902 8936921 GTTGTTCTTGAAGTTGTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sans FBgn0033785 FBtr0087790,FBtr0087791 1 2 2 108 2R 8827580 8827667 CTGCCAGTATTTCAGAAGC 58 8827739 8827757 AGGTGAGTTTACGGAATGG 59 NA Drosophila melanogaster 50 CG17019 FBgn0033783 FBtr0087806 1 1 1 82 2R 8821000 8821019 TCTATTAAAGCTCAAGCCCA 58 8820859 8820955 CCTCTTTCTCTAGACAGCC 58 NA Drosophila melanogaster 50 CG8771 FBgn0033766 FBtr0087874 1 1 1 88 2R 8572120 8572262 CAGTCGGGAAGAATTAACAC 58 8571992 8572010 CCTCTAGTTGGCTCTTGAC 59 NA Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835 1 6 8 107 2R 8504611 8504629 GCATATTTACCCACTGAGC 58 8504697 8505312 GACGTCTACCATTCTAAATCTG 58 NA Drosophila melanogaster 50 CG13154 FBgn0033736 FBtr0087953 2 1 1 60 2R 8314661 8314680 CGAATAAACTTCGACGACTC 58 8314620 8314641 GATTATCCGGAATCTTTACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33013 FBgn0053013 FBtr0087908 3 1 1 82 2R 8251798 8251889 TGATGAAGTACTACAGACAGC 59 8251933 8251951 TGGTATAATTCCAGCCTGC 59 NA Drosophila melanogaster 50 Cam FBgn0000253 FBtr0088002,FBtr0088001 3 2 2 105 2R 8156852 8156870 AAATCTGGGCGAGAAACTC 59 8156936 8161287 CATCATAGTCACGAATTCTTCG 59 NA Drosophila melanogaster 50 CG13185 FBgn0033661 FBtr0113072 2 1 2 92 2R 7765781 7765854 CCAAAGTAACTACAGAGGCA 59 7765708 7765728 CCTCGATGATCTTACCTAGAG 58 NA Drosophila melanogaster 50 Egm FBgn0086712 FBtr0088090 1 1 1 234 2R 7505191 7505209 AAGTACTTTACCCTGCGAC 59 7504914 7504932 TGAAGAGTGGATTTCTGGA 57 NA DesignNoJunction Drosophila melanogaster 50 tou FBgn0033636 FBtr0113066 1 1 5 162 2R 7469645 7470533 GCATTATGAAAGCGTATGCA 59 7469502 7469520 TTATTGATTGCGCTCTTGC 59 NA Drosophila melanogaster 50 tou FBgn0033636 FBtr0088094,FBtr0088092,FBtr0113066,FBtr0088091,FBtr0088093 2 5 5 103 2R 7469205 7469223 AGGACAAGTTGCTACTGTG 59 7468891 7469138 CTCGTAGCAGTACCAATCG 59 NA Drosophila melanogaster 50 CG34054 FBgn0054054 FBtr0100109 1 1 1 60 2R 7297431 7297452 TATCACCGAATGTAGTAAGCTC 59 7297392 7297411 CAGTTGGCCATAATCATACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or47a FBgn0026386 FBtr0088111 1 1 1 60 2R 7139096 7139185 CTTCTCATCGATTGTTCGC 58 7139208 7139227 TTAGGAGAATGATCTCAGCA 57 NA DesignRelaxed Drosophila melanogaster 50 shn FBgn0003396 FBtr0088099,FBtr0088100,FBtr0088101,FBtr0088098 1 4 4 101 2R 7098299 7098384 GGCAAGCAAGTAAATGTGG 59 7098446 7098467 CTTCTTCTGCAACAATATCTCC 59 NA Drosophila melanogaster 50 luna FBgn0040765 FBtr0088210 1 1 1 256 2R 6877498 6877516 CAAATGCAGAATAACGGCA 59 6877198 6877216 AATTGGCACTTGTGTATCC 57 NA DesignNoJunction Drosophila melanogaster 50 Rpb5 FBgn0033571 FBtr0088237 2 1 1 60 2R 6785887 6785906 CCAGGTGGTTAAGATCATCC 59 6785846 6785867 CAATCGATAGGATATGTACCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 1 12 12 88 2R 6499952 6500255 GCATATGGACATGTATAACTCG 58 6500304 6500322 TATAGTGCGGTTCCTTCTG 58 NA Drosophila melanogaster 50 CG12895 FBgn0033523 FBtr0088314 2 1 1 184 2R 6324622 6324640 AGTTCCGGAATATCCTGTC 58 6324394 6324412 TGACACCATTGATCAACTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG12901 FBgn0033513 FBtr0088354,FBtr0088353,FBtr0088355 3 3 3 127 2R 6244081 6244100 ACAAAGATAAGGCCAAGGAC 59 6243973 6243993 TTCTTATCCCTATTCCTTGCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Obp46a FBgn0033508 FBtr0088359 1 1 1 62 2R 6199173 6199191 ATACGAGACGGATGAAGAG 58 6199078 6199096 CTGTTGAAACTGCACTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG1688 FBgn0027589 FBtr0088495 3 1 1 219 2R 5663322 5663340 CAGAAGAAAGTCCACACCA 59 5659923 5660050 CAATTGACAGGCATCTCCT 59 NA DesignRelaxed Drosophila melanogaster 50 Uba1 FBgn0023143 FBtr0088499 3 1 1 96 2R 5577416 5577498 GATTCCATCAAGAAAGCTCTG 59 5577340 5577361 GGTTAACATATTGATCCTCCCA 59 NA Drosophila melanogaster 50 CG1814 FBgn0033426 FBtr0088523,FBtr0088521,FBtr0088522 2 3 3 81 2R 5468496 5468576 AAATCTACTACGAGGGTTCG 58 5468619 5468638 TGATCTCCGAAATAGAGCAC 59 NA Drosophila melanogaster 50 CG12932 FBgn0033419 FBtr0088514 2 1 1 62 2R 5411740 5411759 TGCCATACTCGAAACTAGAC 59 5411784 5411802 TTACTTGTCGCTTATGCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Phax FBgn0033380 FBtr0088569,FBtr0088568 1 2 2 102 2R 5003141 5003159 AGTGAAGATAAGCAACCGG 59 5003283 5003301 TATTGATCTCGTGGGTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG8642 FBgn0033312 FBtr0088729 1 1 1 61 2R 4501395 4501413 GGAAAGATAGCCGAGAGTG 59 4501352 4501370 TGCAGCTTGTTTATCTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6a14 FBgn0033302 FBtr0088734 1 1 2 71 2R 4453321 4453339 CACCTCTGCCTATAGTTGG 59 4453268 4453286 TTCTTTGGTTGATATCGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30360 FBgn0050360 FBtr0088751,FBtr0088750 2 2 2 60 2R 4353596 4353614 GATACGCGAGTTATCATGG 57 4353635 4353656 CATAGAACTGCATCACATAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lig FBgn0020279 FBtr0100575,FBtr0088775,FBtr0088776,FBtr0088774 3 4 4 81 2R 3961935 3961953 TGCCATACTATCAGCAACC 59 3961997 3962988 TAATATCCCTGCACATGTGG 59 NA Drosophila melanogaster 50 CG2065 FBgn0033204 FBtr0088922 2 1 1 60 2R 3551754 3551772 AGAACTGGACTTGAGTTCG 59 3551795 3551870 CTCTTTCTTGAATCCAGCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG1621 FBgn0033182 FBtr0088984 1 1 1 60 2R 3379317 3379335 TGTACATCCGCAATAACCT 58 3379275 3379293 ATATCGTTGTAGAAGCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012 1 6 7 106 2R 3293620 3293714 AAATATGACTTCAAGCCAGC 58 3287508 3293552 CCGGAACTTTCAGAATTTGG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111066 1 1 60 109 2R 3225834 3225852 GATAGATTCCGTTCATGCG 58 3219874 3225761 ATCTGGGAGGTACATTGAC 58 NA Drosophila melanogaster 50 CG12842 FBgn0033131 FBtr0089029 3 1 1 63 2R 2927053 2927072 CCTATCCTTGTTATCTGTGC 57 2927098 2927116 CCAATGTGCACATTCAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)01289 FBgn0010482 FBtr0110900,FBtr0086137 2 2 4 83 2R 2622092 2622242 TATACGAAGGTGAACTTCAGC 59 2622029 2622047 TCACATCATCTTCATCGCC 59 NA Drosophila melanogaster 50 CG9422 FBgn0033092 FBtr0086120,FBtr0086121 3 2 2 104 2R 2579666 2579684 AGATTATAGTCACACGCCA 58 2579808 2579826 AATCAGTGGACGTATTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG9422 FBgn0033092 FBtr0086120,FBtr0086121 1 2 2 99 2R 2579672 2579690 TAGTCACACGCCAAATACC 59 2579808 2579827 AAATCAGTGGACGTATTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9410 FBgn0033086 FBtr0086116 3 1 3 61 2R 2556768 2556786 CTCCAAACCGTAACATTGC 59 2556809 2556829 ACAGGATAAGAGCAATCTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 EcR FBgn0000546 FBtr0086012,FBtr0086011,FBtr0086008,FBtr0086010,FBtr0086009 2 5 5 80 2R 1981446 1981524 GCGTATAATGAGTCAACCC 57 1981384 1981403 GTGAGTATGGTTATCTCGGT 58 NA Drosophila melanogaster 50 Or42b FBgn0033043 FBtr0086051 2 1 1 61 2R 1684849 1684870 TCTTTCAGATATCCATGAGCAG 59 1684745 1684763 GGTTATCACGGAGAAAGCA 59 NA DesignNoJunction Drosophila melanogaster 50 snoRNA:Psi18S-525j FBgn0083029 FBtr0113555 1 1 1 60 2L 20421993 20422012 AAATAAGTAGACGAACGGCA 59 20422035 20422053 AAACACAAGTCATCTGCGA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1428 FBgn0032967 FBtr0085929 3 1 1 60 2L 21907655 21907673 CATAGTCTGATCACTCCGT 58 21907696 21907715 GACCGAGAGCTATAACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9253 FBgn0032919 FBtr0081468 3 1 1 287 2L 21143660 21143679 AAGGATGTAATTGGCCTAGC 59 21144118 21144136 TAGATGATCAACCAAGCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG14402 FBgn0032894 FBtr0081425 3 1 1 60 2L 20849956 20849974 CAAACGGGAATTCTTCAGC 59 20849998 20850016 CGAACTCTGGGATAAACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 szar FBgn0032885 FBtr0089945 2 1 3 191 2L 20790710 20791237 GCTATACTTGCTACATGCG 58 20790468 20790486 CTTGGGATGGTATGAGTCC 59 NA Drosophila melanogaster 50 CG15477 FBgn0032865 FBtr0081380 2 1 1 228 2L 20544651 20544670 GTTCTAATTTGGTGGGACTG 58 20544861 20544879 ATCCGTATACGGACATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sick FBgn0085372 FBtr0112547 1 1 3 104 2L 19929347 19950418 CAACCAATGTAAGTTCACAC 57 19950484 19950503 GCTACCCAGATAAATATGCC 57 NA Drosophila melanogaster 50 CG10466 FBgn0032822 FBtr0081291 3 1 1 72 2L 19792588 19792606 GATAGGACACTAAGGGTCG 58 19792642 19792660 TTTCCTCGTCCATCTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 swm FBgn0002044 FBtr0081244,FBtr0081245 2 2 2 184 2L 19496695 19496714 TGCGAATAACAAGTCTACCC 59 19496861 19496970 CGCCGAAGTTCTTAAAGTG 59 NA Drosophila melanogaster 50 CG13083 FBgn0032789 FBtr0081241 3 1 2 141 2L 19488277 19488295 AAGAACATTGAAAGGACGC 58 19488456 19488475 CATAGACGTTCTCGTATCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG10495 FBgn0032750 FBtr0081150 3 1 1 60 2L 19064547 19064566 TTCTTTACGGTATTCAGAGC 57 19064589 19064607 CCAGTTCCAAATCTTCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10431 FBgn0032730 FBtr0081134 2 1 1 145 2L 18977189 18977276 TCTTGGAGATGATCTGAATCTC 59 18977382 18977400 AAGTAACCTTGACTAGCGC 59 NA InUTR Drosophila melanogaster 50 CG10428 FBgn0032724 FBtr0081132 1 1 1 165 2L 18949223 18949241 TTTACGGAGTTCCCAACTC 59 18949370 18949444 TCTTGCAATAAGCTCTCGG 59 NA Drosophila melanogaster 50 CG31751 FBgn0086909 FBtr0081092 3 1 2 63 2L 18679132 18679150 CGATCGCAACTTCTTTGTC 59 18682280 18682298 ACAGTGGGTTACAATGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10413 FBgn0032689 FBtr0081080 2 1 1 103 2L 18602866 18603715 AATAACACGATACCCGTTCC 59 18602782 18602801 GATCCTAGATTATCCCGCAG 59 NA Drosophila melanogaster 50 RpS26 FBgn0004413 FBtr0081091 1 1 3 176 2L 18443098 18443116 CTAAATGCTAATGGCCGTG 58 18442940 18442960 GATGACGAACTTCTTGATTGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Socs36E FBgn0041184 FBtr0081041,FBtr0081040 3 2 2 281 2L 18141991 18142009 AAGTACGTTACAACTGCAC 57 18141235 18141747 TTATTGCTTCTGGAAACTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG17928 FBgn0032603 FBtr0080908 1 1 1 122 2L 16792164 16792184 CAAGGAACTACAAGTTCACTC 58 16792268 16792382 CAAGATGGAGAAACTCGGT 59 NA Drosophila melanogaster 50 mRpL4 FBgn0001995 FBtr0080843 3 1 1 60 2L 16328291 16328309 GATCTGGGCTATGTCAACC 59 16328249 16328269 GCTTCAGCATAGAATAGACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17328 FBgn0028895 FBtr0080829 1 1 1 60 2L 16300603 16300621 ACAATATCTGGGCATTCTG 57 16300645 16300663 CACAAAGTCCGTATTGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ca-alpha1D FBgn0001991 FBtr0090006,FBtr0090004,FBtr0090005 2 3 4 83 2L 16186142 16189035 TATAACAATGTCTACGCACCC 59 16189080 16189098 CTGATCGTAGGGACTAGCT 59 NA Drosophila melanogaster 50 sna FBgn0003448 FBtr0080739 2 1 1 72 2L 15477964 15477982 GGATCTATCCCTGAAACGG 59 15477910 15477928 ATAGTCACGTTTCGGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mol FBgn0086711 FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015 1 5 5 81 2L 14984076 14984208 CTAGTCATATTAATCACTCGCC 58 14984016 14984034 GTGAGAAGGCTTTGTATGG 58 NA Drosophila melanogaster 50 ics FBgn0028546 FBtr0080511 1 1 1 107 2L 13639939 13639957 AAGATGGAGGAGAATCCCT 59 13639787 13639874 GTTGTAGATGATCTTATAGGTCTCC 59 NA Drosophila melanogaster 50 Nnp-1 FBgn0022069 FBtr0080473 3 1 1 60 2L 13364778 13364799 CAACTACGATGAGGTTATTAGC 58 13364739 13364758 GTAATTCACCTTCTTCTGCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ACXC FBgn0040508 FBtr0080413,FBtr0100494 3 2 2 91 2L 12912877 12912954 CTTTACGTACAGCACTATAACG 58 12913006 12913024 AAATTGATGCTCAACACGG 59 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090025,FBtr0090020 2 2 17 141 2L 12726989 12727008 ATTCCAAGCTTTCCAAATCG 59 12727112 12737411 GAATGACGTGAAACCTTGG 59 NA Drosophila melanogaster 50 CG17024 FBgn0032437 FBtr0080371 3 1 1 60 2L 12454255 12454273 ATGAAGGTTGAATTCGGTG 58 12454297 12454315 AGTCAATTATGTCCGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4983 FBgn0032371 FBtr0080253 1 1 1 60 2L 11653514 11653535 CCAACAAGTCAAATGTACTACC 59 11653554 11653574 GCTTCCGAATGAATATAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6509 FBgn0032363 FBtr0080246,FBtr0080247 1 2 2 80 2L 11511227 11511245 TCAACGGTGTATGATGAGG 59 11510837 11511185 CACATACCTTAGAGTCTCTGC 59 NA Drosophila melanogaster 50 salm FBgn0004579 FBtr0089913 2 1 1 81 2L 11436265 11436284 GAAGCAACACATGCTAACTC 59 11435916 11436224 CTCACTCATATACTTTACGGCA 59 NA Drosophila melanogaster 50 Porin2 FBgn0069354 FBtr0080184 1 1 1 163 2L 10846348 10846366 AATTTGACGTTGGCAACAC 59 10846140 10846158 CTTGGTTACCTCGATACCG 59 NA DesignNoJunction Drosophila melanogaster 50 Lip2 FBgn0024740 FBtr0080123 2 1 1 170 2L 10702988 10705038 AGTTTATCAAGAAACGCCAG 58 10702775 10702796 GTAGATACTCGTAGTTAAAGGC 57 NA Drosophila melanogaster 50 Myo31DF FBgn0086347 FBtr0080035,FBtr0080036 3 2 2 102 2L 10494502 10494521 CTGGATATTTACGGCTTCGA 59 10494359 10494440 GCACCAGTTCTATGAATAACTG 59 NA Drosophila melanogaster 50 CG5343 FBgn0032248 FBtr0080044 1 1 1 64 2L 10430580 10430598 CAACGACATACAAAGCCTC 58 10430534 10430552 ATGTTATGAACGTGGTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LSm-4 FBgn0067622 FBtr0091657 1 1 1 63 2L 10404635 10404653 TGTCAAAGTTGCAATGGAG 58 10404530 10404549 GGTTTATCAATTTGCACGGT 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG5731 FBgn0032192 FBtr0079959 3 1 1 82 2L 10207544 10207563 AACTCCATCGGATATTTCGG 59 10207418 10207499 TTTCGTAAAGGTCCTCCAC 59 NA Drosophila melanogaster 50 Ripalpha FBgn0032189 FBtr0079962 3 1 1 200 2L 10200226 10200298 TCCAATTGTCCGAACTCAG 59 10200044 10200062 TAATCTGACAAACTGGGCA 58 NA Drosophila melanogaster 50 CG31711 FBgn0051711 FBtr0079880 2 1 1 107 2L 9926998 9927075 CTCTTCCAGGTCCTAACTG 58 9927146 9927164 TATCTTGATGAGATCCGGC 58 NA Drosophila melanogaster 50 CG9573 FBgn0032089 FBtr0079779 1 1 1 60 2L 9013257 9013275 GTTGAAGTTTCCATGCCTC 59 9013215 9013235 CGTAAGTAGTAGATAGCAGCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp29Fb FBgn0032075 FBtr0079755,FBtr0079756 1 2 2 80 2L 8939019 8939127 CAATCTATGCTAGAGTGTTGC 58 8939168 8939187 CAGAGTGAAGTTCACATTGG 58 NA Drosophila melanogaster 50 CG8486 FBgn0031993 FBtr0079583,FBtr0079582 1 2 3 133 2L 8183521 8183539 CTTTGTGAATCGCATCCTG 59 8183702 8184140 GTTCACTTTCATCGCTCTC 58 NA Drosophila melanogaster 50 Cka FBgn0044323 FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538 3 4 4 100 2L 8036254 8036272 ACATCAATGGAAACGAGAG 57 8036394 8036413 GTCCACGATTATTTCATCGA 57 NA DesignNoJunction Drosophila melanogaster 50 Cka FBgn0044323 FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538 1 4 4 98 2L 8036254 8036272 ACATCAATGGAAACGAGAG 57 8036391 8036411 CCACGATTATTTCATCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Snoo FBgn0085450 FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718 1 4 5 60 2L 7894794 7894812 GAATAAAGCTGCAGGTTGG 59 7894752 7894772 GGACTTTCCTCATTCTCTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Slob FBgn0024290 FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518 2 4 4 80 2L 7649009 7649027 TGAGGACTTAGTCCTTTGC 58 7648879 7648968 GGCTTAATTGTACTGAAACAGG 59 NA Drosophila melanogaster 50 CG15819 FBgn0031919 FBtr0079457 2 1 1 82 2L 7474306 7474324 AACAATGGAAACGCAAGAC 59 7474124 7474142 CTCTGAAACCTTGGATTGC 58 NA DesignNoJunction Drosophila melanogaster 50 SP1070 FBgn0031879 FBtr0079354 1 1 1 80 2L 6973679 6973757 TACATGAAGGATGGTCTGC 59 6973617 6973638 GTCTTCTTTAGTTCCATAGAGC 58 NA Drosophila melanogaster 50 CG11188 FBgn0031851 FBtr0079299 2 1 1 68 2L 6718520 6718538 TTCATCCAAGCTACTGCAG 59 6718570 6718588 TTCATCTCGGAGTATTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13982 FBgn0031811 FBtr0079256 2 1 1 172 2L 6413222 6413240 ATCTCTTATCGAGGACCAC 57 6413432 6413450 GTTCTGCATTTGAATGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG13994 FBgn0031772 FBtr0079188 1 1 1 145 2L 6063078 6063096 TAATTGACGAAACCGATGC 58 6063205 6063223 CTTCTTGCGATTCAAATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ade2 FBgn0000052 FBtr0079220,FBtr0079219 2 2 3 117 2L 6044341 6044436 ACATTCCAGGTTACAAACAG 58 6044243 6044261 TTATTTCCGTAGTCGGAGG 58 NA Drosophila melanogaster 50 CG31647 FBgn0051647 FBtr0079131 1 1 2 91 2L 5439277 5445113 GAAGGAGACTACACGACAG 59 5437080 5437099 CTAAACTTTGAAGGAGCTGC 59 NA Drosophila melanogaster 50 tkv FBgn0003716 FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086 1 4 4 224 2L 5221390 5221470 TTCTCATGTGCAAGGTAGC 59 5221184 5221202 ATAAGCTAGCCACGATCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG7742 FBgn0031690 FBtr0079092 1 1 1 84 2L 5213324 5213400 GCTACATGACTACGATATTGAG 58 5213261 5213279 GAAGACCAGTTTGTCAACG 58 NA Drosophila melanogaster 50 CG31918 FBgn0031678 FBtr0079028 2 1 1 60 2L 5057723 5057742 AGAAGTTTCAGTGGATGGAG 59 5057682 5057700 ATGATGTCATTGAAGCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15629 FBgn0031630 FBtr0077383 1 1 1 80 2L 4814827 4814845 ATTGCCCTAAACTTTGCTC 58 4815023 4815042 ATCCACAGTTGTCTTTATGG 57 NA DesignNoJunction Drosophila melanogaster 50 Psf2 FBgn0031599 FBtr0077461 2 1 1 62 2L 4386507 4386525 TGCAAAGCTAGACAACCTC 59 4386463 4386481 GAATAGGGCAGAATGGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NTPase FBgn0024947 FBtr0077680,FBtr0077682,FBtr0077683,FBtr0077681 3 4 4 142 2L 2881427 2881445 CCTTACCTTCATCTCGACG 59 2881242 2881260 ATTTCTCGTCGCTAGTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 oho23B FBgn0015521 FBtr0077621,FBtr0077624,FBtr0077622,FBtr0077623 1 4 4 68 2L 2856560 2856643 CATTACCAAGAACTTCTAAGCG 59 2856671 2856690 GGGAAATCGCTTTATTACCA 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG3104 FBgn0031473 FBtr0077687,FBtr0077686 3 2 2 285 2L 2852250 2853261 TGTCGCTTAAGAAGGAGAC 59 2850468 2850486 ATCAGAATCTTCACCACGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG17237 FBgn0031410 FBtr0077801 1 1 1 60 2L 2288674 2288692 TAGGATCAACAAAGACGGC 59 2288632 2288653 CCCATAGATAATGTCTTGAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GlyP FBgn0004507 FBtr0100485,FBtr0077828 2 2 2 77 2L 2134899 2134917 ACAACAACCACGTAAACAC 58 2134957 2135046 CATCGTTGAAGAACTTGAGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5118 FBgn0031317 FBtr0077979 2 1 1 97 2L 1171783 1171801 TTATAAGCGGAAACACCGA 58 1171634 1171722 GTGAATGGGTAGCAATCCT 59 NA Drosophila melanogaster 50 PNUTS FBgn0053526 FBtr0091486,FBtr0091489,FBtr0091487,FBtr0091488 1 4 4 81 2L 872013 872033 CAATCGCCTCAAGATAAACTC 59 872076 872221 TAGAATGCGTACACCTTCG 59 NA Drosophila melanogaster 50 dock FBgn0010583 FBtr0078013,FBtr0078015,FBtr0078014 1 3 3 101 2L 831534 831552 TATTATGGAGCCATCACCC 58 831616 831722 GTCTCCCATGTTAGTCTCAC 59 NA Drosophila melanogaster 50 CG13690 FBgn0031252 FBtr0078090 2 1 1 60 2L 419207 419225 AACACCAAGGAATATGCGA 59 419165 419183 TGTTCGGCGATATGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)gl FBgn0002121 FBtr0078171,FBtr0078170 2 2 6 138 2L 15703 17062 TTATCGTAAGACGGCACAG 59 15583 15601 ACCGTACAATTCAACTCCG 59 NA Drosophila melanogaster 50 Mgstl FBgn0025814 FBtr0077242 2 1 2 67 X 20913603 20913623 TGGTCGGCTATATTGATACTC 58 20913652 20913670 GTAAAGAAGCGCATGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14221 FBgn0031042 FBtr0074764 2 1 1 88 X 19513568 19513587 TTCTTTAACGGTGACAATCC 58 19513416 19513517 TTGTCGGTAGGAACATACG 59 NA Drosophila melanogaster 50 vav FBgn0040068 FBtr0074677,FBtr0113316,FBtr0074678 1 3 3 202 X 19164841 19164859 ACAGAATCCGGTAAGTGTG 59 19165025 19165116 TATCATCGGTCTTTAGGCT 57 NA DesignRelaxed Drosophila melanogaster 50 bnb FBgn0001090 FBtr0074659,FBtr0074656,FBtr0074658,FBtr0074657 3 4 4 63 X 18689036 18689054 GATGAGTCCTCAGAGTCCA 59 18688991 18689012 ACTATTCCTAGTTCTCCTTCGA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG32560 FBgn0052560 FBtr0113438,FBtr0074457 3 2 2 164 X 17640916 17641005 GTCATGTCCACCATAGATCTC 59 17641131 17641149 CGAGTAGATCCAAAGGTCG 59 NA Drosophila melanogaster 50 CG8289 FBgn0030854 FBtr0074484 3 1 1 99 X 17528632 17528650 AATCGTATTGAACGCTCCT 59 17528331 17528351 TTCCTACATGGATTTCCTTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG8568 FBgn0030841 FBtr0074436 2 1 1 82 X 17345164 17346090 GATTCGATCAGAAAGTGTGC 59 17345101 17345119 CCTGCCATTAAGAAAGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5070 FBgn0030824 FBtr0074389 2 1 1 75 X 17097390 17097408 GGATCTGGCTATGGATCAG 58 17097446 17097465 ATACCTTGATCACCTTCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9784 FBgn0030761 FBtr0074289 2 1 1 60 X 16492126 16492147 ATTTCCGGATAACATATCCCTC 59 16492087 16492105 CTTATCCACCGTCACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12481 FBgn0030542 FBtr0100281 1 1 1 60 X 14081464 14081482 TTATCACTTCGTCACCGAG 59 14081503 14081524 CGGTTTGATGTAATAGTTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NFAT FBgn0030505 FBtr0073808,FBtr0112980 2 2 2 139 X 13549482 13549568 AATCATCTGCACTCAACCA 59 13549671 13549689 ATGTCTCCTGAAACACCAC 59 NA Drosophila melanogaster 50 CG32647 FBgn0052647 FBtr0073703,FBtr0073702 1 2 2 114 X 12670827 12670915 ACAAACTGTACCAGGAACG 59 12670731 12670749 AGGAATCCCAGCATTATGG 59 NA Drosophila melanogaster 50 CG15307 FBgn0030192 FBtr0071442 3 1 1 84 X 10238018 10238036 ATAGGAGGCGTAACTACGA 59 10238083 10240894 GACGATCGGTAATTAAGCCT 59 NA Drosophila melanogaster 50 CG17440 FBgn0030120 FBtr0071328 1 1 1 87 X 9162927 9163011 TATTTCAGATTCTGCCGCA 59 9162858 9162876 TTGAGCTCTAGATGCTTGC 59 NA Drosophila melanogaster 50 CG32727 FBgn0052727 FBtr0071056 2 1 1 104 X 7301527 7301604 GCTTTCAGAAACGGATGTC 59 7301672 7301690 TTCGATCCGGATGTTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33691 FBgn0064122 FBtr0091671,FBtr0091673 2 2 3 60 X 6771757 6771777 CGCTAGCTAGCAATAATTCAG 58 6771798 6771817 TTGTTATTCCGTCGTACTCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32750 FBgn0052750 FBtr0070881 2 1 1 167 X 6089883 6089901 ATAGCCACCTTTACAACGG 59 6089676 6089752 AAATTGAGAGGCTGTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5928 FBgn0029836 FBtr0100295,FBtr0070871 2 2 2 80 X 5962699 5963093 CTCAACACCTTTATTCAGAAGC 59 5963131 5963152 TCCTATGATATCCAATTGAGCC 59 NA Drosophila melanogaster 50 CG15766 FBgn0029813 FBtr0070832 1 1 1 150 X 5709770 5709788 GATTGCCGATGACATTGTG 59 5709638 5709656 TAGCAGAAACTCCTTGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pon FBgn0025739 FBtr0070681 2 1 1 198 X 4530753 4530771 AAGTCCATAGCTGATCTGG 58 4530931 4531145 CCTCATATGGATTGAACTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32793 FBgn0052793 FBtr0070550 3 1 1 63 X 2824349 2824367 TGACTTTATCATCCACCCG 59 2824394 2824412 CTGGATCTCCTCTAGGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 boi FBgn0040388 FBtr0114528 1 1 3 148 X 2340562 2340580 AAGCGGACTTTGTTACCTC 59 2340218 2340452 GAACATTGGACTCTTATCGGA 59 NA Drosophila melanogaster 50 CG2924 FBgn0023528 FBtr0070412 3 1 2 96 X 2163040 2163058 TCAGATCCTCAATTCCAGC 59 2161318 2162981 ATACGTTTCCGTTATGTTGG 58 NA Drosophila melanogaster 50 CG18031 FBgn0023550 FBtr0070423 1 1 1 100 X 2097004 2097023 CAACACGTATACGTTTACCA 57 2096868 2096943 CAAAGAGAACTATGGAAGGAC 58 NA Drosophila melanogaster 50 b6 FBgn0024897 FBtr0070272 2 1 1 159 X 1581301 1581319 GATGCGATTCACTAACCAC 58 1582605 1582697 CAACGGGTAGTTCAATCTG 58 NA Drosophila melanogaster 50 CG13358 FBgn0026874 FBtr0070144 2 1 1 60 X 699380 699399 ACTATATGGACTACCTGTGG 57 698941 699357 GTATTGTGGAGCCTATTCG 57 NA DesignRelaxed Drosophila melanogaster 50 CG40626 FBgn0085504 FBtr0113916 1 1 1 61 U 9898120 9898138 GCTATAAACTCGGCAAGGT 59 9898163 9898181 CTATGGCAGATCGTACACC 59 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG40530 FBgn0085494 FBtr0113904 1 1 1 143 U 8030062 8030080 CAGAGGACGAATACGTCTC 59 8029937 8029956 GGCATTGATGACAGAATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40820 FBgn0085523 FBtr0113936 1 1 1 222 U 7044978 7045145 GTAAGACACGTTCAACCAG 58 7043624 7043642 TAATCGATAGTGGGCTTGC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CR14638 FBgn0037223 FBtr0113190 2 1 1 121 3R 70296 70371 CGCATCTTTCTAATTCTAAGCC 59 70452 70471 TATAGCCTTAGAAAGCTGGG 58 NA Drosophila melanogaster 50 CG31038 FBgn0051038 FBtr0085498,FBtr0085499,FBtr0085497,FBtr0085494 2 4 6 81 3R 25723358 25727914 GAAGGAAATGAACGGACTG 58 25727959 25727977 GAACTCTTGGATCGATTCG 57 NA Drosophila melanogaster 50 CG7789 FBgn0039698 FBtr0085483 3 1 1 271 3R 25629389 25629471 GGAGTATACACAGGGACAC 58 25629706 25629724 TCAGAACTTCTGTGGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sirt7 FBgn0039631 FBtr0085364 1 1 1 122 3R 24882027 24882265 AAGGGTCTCGATGATACTG 58 24882351 24882369 TATATCTCTACCCGCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1894 FBgn0039585 FBtr0085290 1 1 1 78 3R 24310405 24310423 TAAAGTATCAGCCGTTGGG 59 24310465 24310564 TTAGTCAATTGCAGGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4884 FBgn0039565 FBtr0085264 2 1 1 139 3R 23783454 23783535 CGAGAAACAAAGTGGAACTG 59 23783282 23783301 ATGGGAAGGATTCGATTGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12259 FBgn0039557 FBtr0085270 1 1 1 60 3R 23746110 23746128 CGTCAAGAATGGGTAATGC 58 23746068 23746086 TGAACGTGATGGAGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12877 FBgn0039544 FBtr0100446,FBtr0085223,FBtr0085222 3 3 3 80 3R 23536242 23536338 GATTATACAGGAGAGCGAGG 59 23536379 23536399 CGCAGATAATACTTGATGAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6059 FBgn0039491 FBtr0085130 1 1 1 223 3R 22948908 22948926 GATCTCCCGTTTGAATGAC 58 22948645 22948721 ACTTCAAGGCAAGTGTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 spz FBgn0003495 FBtr0085140 3 1 12 91 3R 22893080 22893101 GTCAGCATCTAATCACTTACAG 58 22892191 22892336 GGAAGACAAAGGTATCCGA 58 NA Drosophila melanogaster 50 NepYr FBgn0004842 FBtr0085100 3 1 1 98 3R 22855542 22855560 GTTTATTGCACTTGCCACC 59 22855622 22856386 CGGCAAATGTATTTCTCGC 59 NA Nonspecific Drosophila melanogaster 50 CG14248 FBgn0039445 FBtr0085052 1 1 1 140 3R 22475236 22476722 AGTGAAAGTTGAGGTGGAG 59 22475114 22475132 GTCACTACCGTACCATGTG 59 NA Drosophila melanogaster 50 CG31081 FBgn0051081 FBtr0085033 3 1 1 78 3R 22460648 22460722 AGTGTTTCTTACGTTGTTGG 58 22460763 22460781 CACAGGTCCTCCATAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HLHmgamma FBgn0002735 FBtr0084955 1 1 1 68 3R 21825782 21825800 GATCTTATGGTTGCCACCT 59 21825832 21825850 CAGGATATCGGCTTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5959 FBgn0039387 FBtr0084940 3 1 1 82 3R 21724934 21724955 CACATACACGGATTTACATTCC 59 21724998 21725083 TCCAGCTCCTGAATATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10553 FBgn0039324 FBtr0084853 3 1 1 166 3R 21142945 21143024 AAATGATCTGCGCATTGTC 59 21142797 21142817 GATCGACAAAGTAGGTATCCT 58 NA Drosophila melanogaster 50 CG5728 FBgn0039182 FBtr0084632 3 1 1 83 3R 20156574 20156594 CTCTAACAGTTTCAGCAAAGC 59 20156449 20156532 CATTTAAATAGCCTTCGACCAG 59 NA Drosophila melanogaster 50 CG5515 FBgn0039163 FBtr0084574,FBtr0084575 1 2 2 60 3R 20014285 20014305 CAACTACAAGGAAGATCAGAC 58 20014245 20014263 ATCGCCACAGTATATGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mpk2 FBgn0015765 FBtr0084580 1 1 2 169 3R 19977709 19977824 AATGATATGCGCATTCGTG 59 19977458 19977576 TTAATGGTGCCTCTGTTCC 59 NA InUTR Drosophila melanogaster 50 CG13602 FBgn0039127 FBtr0110793,FBtr0084521 2 2 2 60 3R 19753915 19753933 GCATCATCCCTTTATACGG 57 19753873 19753891 AAAGGTGTTGTAGAGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16710 FBgn0039101 FBtr0084438 2 1 1 87 3R 19509028 19509046 AAGCATAGGCACTACATGG 59 19509097 19509253 ACTTATGGTTGCGTACTGG 59 NA Drosophila melanogaster 50 CG13836 FBgn0039060 FBtr0084370 1 1 1 61 3R 18995836 18995854 ATAAATCGGAACTGGTGGG 59 18995879 18995897 CTTATCCTTCTCATCGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6726 FBgn0039049 FBtr0084349,FBtr0084348 2 2 2 95 3R 18918259 18918330 GACTCTTTGGCATCTTCGT 59 18918388 18918407 ACCACATAGTTCAGCTTCTC 59 NA Drosophila melanogaster 50 CG34375 FBgn0085404 FBtr0112607 1 1 1 95 3R 18832381 18832400 GGCATTAATCAACAATCGCT 59 18828724 18832323 TGGTTTGATGACCTCAAGG 59 NA Nonspecific Drosophila melanogaster 50 tin FBgn0004110 FBtr0084086 3 1 1 289 3R 17206635 17206654 CATCTACGGTTCAGATGAGG 59 17207331 17207352 GATTCTGGAACCAAATCTTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 ETHR FBgn0038874 FBtr0084054,FBtr0084053 1 2 2 60 3R 17084707 17084725 ATAGTCATCATGCTGCTGG 59 17085196 17085214 TCTTCACAATCACGATGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3353 FBgn0038869 FBtr0084108 2 1 1 126 3R 17043428 17043505 AAAGTCGGAGAATTTGCTG 58 17043320 17043338 CAATGTCGTTGGAATAGGG 58 NA Drosophila melanogaster 50 CG10825 FBgn0038860 FBtr0113258 3 1 3 121 3R 16956616 16956636 CGTGTGCAGAAATACATACAC 59 16956795 16956813 CTGAGCATTGAGACTCCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 sec15 FBgn0038856 FBtr0084034 3 1 1 72 3R 16932409 16932428 TTAAGTGCTACGGTTACACC 59 16932292 16932376 ACCTCATTATAATGATCCCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10887 FBgn0038773 FBtr0083864 1 1 1 123 3R 15940786 15940860 CATTCAATAGGAGGAGCCC 59 15940945 15940965 GGAACACTATTTGCTGTTGAG 59 NA Drosophila melanogaster 50 trem FBgn0038767 FBtr0083840 3 1 1 81 3R 15855663 15855681 CAGAACGTTTACCTACTCG 57 15855541 15855618 ACAAAGATCACAGACATGC 58 NA Drosophila melanogaster 50 CG11453 FBgn0038734 FBtr0083791 1 1 1 83 3R 15609857 15609875 CTCAAGGATCATCGACTGG 59 15609920 15610000 AGTTTCGGGTACATAGTACAG 58 NA Drosophila melanogaster 50 CG6300 FBgn0038730 FBtr0083798 2 1 1 70 3R 15598227 15598245 ACAACTGGTACTCCAAAGG 59 15598113 15598193 GTCAGATGATAGTTGCCTG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15025 FBgn0038709 FBtr0083768 3 1 1 62 3R 15316150 15316303 AATCTAAGCCTTCTGTATCCG 59 15316108 15316132 CTATATCCTTGATACTCCTAGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gukh FBgn0026239 FBtr0089767 1 1 4 148 3R 14839141 14839159 ATCAGAAGGAGATCCAGGA 58 14846750 14846768 TGCAGTGTCCAATAGATGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7131 FBgn0038598 FBtr0083598 2 1 2 111 3R 14113252 14113327 AAAGCTGTCCTATCAACCG 59 14113159 14113177 ATCGTGTTTCTGAGTGGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Prx5037 FBgn0038519 FBtr0083503 2 1 1 81 3R 13371568 13371643 CCCACTAGATTTCACATTCG 58 13371506 13371526 GGTGTTAATGTCATGGAACTC 58 NA Drosophila melanogaster 50 CG3995 FBgn0038472 FBtr0083428 3 1 1 99 3R 12868324 12868398 GAGAAGGGCCTTAAAGGAC 59 12868243 12868261 CTCCGACGAAGTAAGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ARP-like FBgn0027095 FBtr0083283 3 1 1 81 3R 12175449 12175468 GAAGGACTACAAACAGATCG 57 12175509 12175616 GTAGTAACAGAATCTGTGTTCC 58 NA Drosophila melanogaster 50 CG14876 FBgn0038368 FBtr0083192 1 1 1 152 3R 11659422 11659440 TTCAATGGACCCTACATGC 59 11658994 11659306 TTTAGCTGGAATGGGACAG 59 NA Drosophila melanogaster 50 Surf4 FBgn0019925 FBtr0083118,FBtr0083117 3 2 2 82 3R 11170644 11170663 GATTTAAGGTCGACATAGCG 58 11170516 11170534 GAAGTCCCACAGAATGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6912 FBgn0038290 FBtr0083038 1 1 1 122 3R 10962464 10962482 GATATCAGGATGTCAACGG 57 10962103 10962200 TAAGAAAGTATCCAGGCCC 58 NA Drosophila melanogaster 50 CG14839 FBgn0038219 FBtr0082920 1 1 1 60 3R 10088768 10088787 GCCTCAGATCAAGTATACAC 57 10088810 10088828 CTAATAGTGCCGTCTTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9799 FBgn0038146 FBtr0082763 2 1 1 155 3R 9212601 9212679 AAAGGAAAGGTTGACAAGC 58 9212464 9212482 GAACTTGCGAACAATGACC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9813 FBgn0038143 FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767 1 6 6 80 3R 9204503 9204740 TTGCCCTACATCTACAATCC 59 9204442 9204461 GTCCAGTTCACTTACATCGT 59 NA Drosophila melanogaster 50 CG5999 FBgn0038083 FBtr0082659 2 1 1 69 3R 8568649 8568726 CGTAATCGAAATTGGTACAAGG 59 8568601 8568619 TGAGCATTTCCGAGTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14394 FBgn0038079 FBtr0114501 1 1 6 207 3R 8521768 8521861 ATATGAAGGCAATGGATGC 57 8522797 8522815 TGAATGACCAGCAAGAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6574 FBgn0037846 FBtr0082297 3 1 1 80 3R 6687497 6687516 ATCACTTCCCAACTTATGCT 59 6687378 6687454 TATAATCTGAGTGCCCAGC 58 NA Drosophila melanogaster 50 CG6208 FBgn0037789 FBtr0082195 3 1 1 62 3R 5946534 5946552 AGTCTTACGGACAAGTTGG 59 5946490 5946511 CCTCTAGTGTTAATTGTACCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32939 FBgn0052939 FBtr0082085 3 1 1 92 3R 5519222 5519297 GTTGATGAGGACCAAACCA 59 5519353 5519371 ATCTGGTAGCTAGCTTCCT 59 NA Nonspecific Drosophila melanogaster 50 CG11975 FBgn0037648 FBtr0081960 2 1 1 131 3R 4819331 4819425 ATACTTTCCAGAGGGTGGT 59 4819520 4819538 GACTTCTTCAGGTCATCCC 59 NA Drosophila melanogaster 50 CG31259 FBgn0051259 FBtr0081871 2 1 1 292 3R 4351253 4351344 TTTCAAGTCGACTACCTGC 59 4351600 4351618 GGAACTTGTAGTAGCTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 Ctr1B FBgn0062412 FBtr0081835 1 1 1 96 3R 4144502 4144520 ATGCTGATCTTCATGACCT 58 4144580 4144598 GATTCTTCTTGTTCCAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14606 FBgn0037485 FBtr0081603 1 1 1 80 3R 3042364 3042385 ATAATCTTTGGACTGCTACTCG 59 3042227 3042327 CCAGTAGATCATATTGGGTATGG 59 NA Drosophila melanogaster 50 CG1315 FBgn0026565 FBtr0081699 1 1 1 81 3R 2468968 2469597 CCGGATCTGAAGATCATCG 59 2468905 2468923 CATAGGCAATGAGGTCCTG 59 NA Drosophila melanogaster 50 CG1041 FBgn0037440 FBtr0081734,FBtr0110774 2 2 2 106 3R 2198948 2199033 GTGGAATTTGACCAAGAACTC 59 2198862 2198880 CCAAGGGAATGGTCTTCTG 59 NA Drosophila melanogaster 50 CG11459 FBgn0037396 FBtr0078623 1 1 1 60 3R 1852683 1852704 AGATGGGACTAAACAAGTTCTC 59 1852644 1852663 GACGAGCGATAATTGAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hpr1 FBgn0037382 FBtr0078667 2 1 1 169 3R 1645559 1645577 ACAACTGGAAGAACGAAGG 59 1645354 1645427 TGTTAGGTTGTCATTTCCCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG14644 FBgn0037226 FBtr0078981 2 1 1 278 3R 78270 78288 AGACAGGAAATCCTCACTC 58 77955 78028 GATCTCCTTGATCTCGACC 58 NA DesignRelaxed Drosophila melanogaster 50 CG32230 FBgn0052230 FBtr0070041,FBtr0070040 2 2 2 100 3L 23332708 23332726 TAATCCCGATGTCACTTGG 59 23334566 23334584 TGGAATAATCCCTCACAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5274 FBgn0036987 FBtr0078231 3 1 2 140 3L 20420679 20420765 CTCTAAAGTTCCACGATAAAGG 58 20420508 20420578 AATCAATGTTTCCAGTCGC 58 NA InUTR Drosophila melanogaster 50 CG7017 FBgn0036951 FBtr0074856 2 1 1 74 3L 20204842 20205131 GAATAGAGCTAGCGGTGTC 59 20204786 20204806 TATTCAAAGTCCTCGATCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17732 FBgn0036923 FBtr0074898 3 1 1 60 3L 19976825 19976843 CCCATATGAACACGGAGAC 59 19976867 19976885 TAGGATGGATCGTACAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8793 FBgn0036894 FBtr0074966 3 1 1 85 3L 19609174 19609192 TTTACTGAGACCTGGAAGC 58 19609013 19609128 TAACCAGTTCATTCTGAGTCTG 59 NA Drosophila melanogaster 50 CG14095 FBgn0036870 FBtr0074987 1 1 1 137 3L 19457372 19457390 CCAATCCTGAACAGAGTGG 59 19457253 19457271 ATAGTTCAAAGGTGCTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13698 FBgn0036773 FBtr0075137 3 1 1 96 3L 18083173 18083191 GATGATCTCATCCAGGGAG 58 18083030 18083113 TATGATGGCCAGTACACCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG32174 FBgn0052174 FBtr0075227 3 1 1 84 3L 17422690 17422964 GAAAGATAATCAAGTCACGCC 59 17422626 17422645 ATATCGCGTCATCAAGTAGG 59 NA Drosophila melanogaster 50 nxf2 FBgn0036640 FBtr0089479,FBtr0089478 3 2 2 110 3L 16571919 16571937 ATGTGGAGATCGATTTGGA 58 16571768 16571845 GATCGGGTATCATAAAGGC 57 NA Drosophila melanogaster 50 CG13044 FBgn0036599 FBtr0075470 1 1 1 286 3L 16296124 16296207 AAATTGTTCGTTCTCGCTG 59 16295856 16295874 AAAGTCTTCACAATGGGTG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL39 FBgn0036462 FBtr0075672 2 1 1 95 3L 14991963 14991981 TTGCAGCTTTATGTTGGGA 59 14991713 14991906 CCTGATTTGATATTGGGTCCA 59 NA Drosophila melanogaster 50 CG9425 FBgn0036451 FBtr0075692 1 1 2 62 3L 14788839 14788983 TACAAGGATCATCCTGCTG 58 14789009 14789027 GAAGTGAAACGGATGATGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5620 FBgn0036268 FBtr0076012,FBtr0076013 1 2 2 85 3L 12208895 12209529 AAAGCAAATAGAGGTGCCA 59 12208828 12208846 TTTGTCCTTTGACCAGGAC 59 NA Drosophila melanogaster 50 CG5626 FBgn0036266 FBtr0076016 3 1 1 111 3L 12198561 12198639 TCCTACTAGAAGTTGGACGT 59 12198469 12198487 TAGTTGGTGTACCTTTCGC 59 NA Drosophila melanogaster 50 CG34050 FBgn0054050 FBtr0100105 2 1 1 61 3L 10938128 10938147 TACAATTTGCTTGATAGGCG 58 10938171 10938189 ACAGATAGCACGAGTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gap1 FBgn0004390 FBtr0076368,FBtr0076367 3 2 2 106 3L 9834655 9835578 ACTGCTTTAAGATTGTGCAC 59 9834568 9834589 GTTCATCAGACATATCTTGTGC 59 NA Drosophila melanogaster 50 syd FBgn0024187 FBtr0076769,FBtr0076768 3 2 2 82 3L 7919927 7921025 TTCGCATAAACGATAACGAC 58 7919864 7919882 GTAACTCTTATCGCCTCGA 58 NA Drosophila melanogaster 50 CG10147 FBgn0035702 FBtr0076987 1 1 1 94 3L 6480892 6480970 AAGAAAGCTTTGGAAGAGC 58 6480816 6480834 TTCTTGTGCAGAATCAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5568 FBgn0035641 FBtr0077025 3 1 1 105 3L 5865429 5865498 TTTCTACCCGTGGATAGCT 59 5865565 5865585 TACTAGTCAAGCTAAACACGG 59 NA DesignNoJunction Drosophila melanogaster 50 Uev1A FBgn0035601 FBtr0077155,FBtr0077156 3 2 2 139 3L 5357292 5358043 AACACCATTCGAGAATCGA 58 5357103 5357189 ATCTATGATCAACCACGCC 59 NA Drosophila melanogaster 50 Aats-leu FBgn0027085 FBtr0073348 1 1 1 85 3L 4827824 4827844 CAACGAGACTGATCATATTGG 58 4827949 4827967 CCAATTAAGGATGCCAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 Ack FBgn0028484 FBtr0073211 3 1 1 167 3L 4111632 4111716 GCTCTCAAAGAATATTTGGC 57 4111846 4111864 TATATCGAATGTTCGCTGG 57 NA Drosophila melanogaster 50 CG16758 FBgn0035348 FBtr0072966,FBtr0072964,FBtr0072963,FBtr0072965 3 4 4 170 3L 2499617 2499702 AACCACGATGAGGTTATGG 59 2499465 2499483 GTCTTAGATGCGAGCTCAG 59 NA InUTR Drosophila melanogaster 50 drpr FBgn0027594 FBtr0072799 2 1 2 80 3L 1716843 1716861 CGAATCCCTCAAAGAGGAG 59 1716541 1716799 AGGTGATCGTATTCATCGG 58 NA Drosophila melanogaster 50 CG13887 FBgn0035165 FBtr0072583 2 1 2 159 3L 838473 838491 TAAACTTGATCTGCACCCA 58 838614 839257 TTGTTGAGCTCGATGAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG16940 FBgn0035111 FBtr0072486,FBtr0072485 2 2 3 85 3L 213966 214040 ATTATCTCTTGCGGATGGTG 59 214088 214106 ATATCACGACCACGTTGTC 59 NA Drosophila melanogaster 50 Gyk FBgn0025592 FBtr0072530 3 1 2 81 3L 205419 205438 TAGTGAATACGGTCAACGAG 59 203609 205378 GTGATTATTTCCTCAACCTTCC 59 NA Drosophila melanogaster 50 usnp FBgn0034913 FBtr0072236 1 1 1 61 2R 19731730 19731748 ATCAGTTGGACGAGATCAG 58 19731687 19731705 CTTCAGACCAGTCAGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fd59A FBgn0004896 FBtr0071898 1 1 1 79 2R 18756377 18756716 GCTTTCCATACTACAAGGAC 57 18756758 18756776 TATGAAGCAGTCGTTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wrapper FBgn0025878 FBtr0071821 1 1 1 100 2R 18269324 18269342 CTCAAGTTCCGACAGATCC 59 18269406 18269488 TAGATGAGTCCGTTTGTGG 58 NA Drosophila melanogaster 50 wdp FBgn0034718 FBtr0071849,FBtr0071852,FBtr0071851,FBtr0071850 2 4 4 60 2R 18187362 18187380 CGACATAGATAGCGATGGT 58 18187320 18187338 CTCTGGATTCTCAAGAGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr58b FBgn0041238 FBtr0071732 3 1 1 60 2R 17866985 17867006 CTAAACTTGTACTTCATGGTGC 59 17866946 17866967 CTATGTTGTACTTCATGTAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or56a FBgn0034473 FBtr0086344 2 1 1 85 2R 15657949 15657967 ACACCTTTATCACTTGCCT 58 15657818 15657901 TCGGGTAATATCCATCTCCT 59 NA Drosophila melanogaster 50 CG30122 FBgn0050122 FBtr0086660 2 1 1 107 2R 14523768 14523855 CAAAGATGACAATCGATGGC 59 14523680 14523698 TGGCAATATCTTCCAGAGC 59 NA Drosophila melanogaster 50 Mapmodulin FBgn0034282 FBtr0086822,FBtr0113091,FBtr0086823 1 3 3 81 2R 13755981 13756002 TACTCAAGTGGATAATTACCGC 59 13755859 13755939 GTCGTTGCAATCAAATCCA 59 NA Drosophila melanogaster 50 CG6385 FBgn0034276 FBtr0089560 3 1 1 97 2R 13642027 13642110 AAACTGTCTACACCTGTGC 59 13641948 13641966 GGGATTGTAGACCTCTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG4966 FBgn0034261 FBtr0086840,FBtr0086839 2 2 2 83 2R 13577313 13577390 ATCTTGAGATCCAACGACTC 59 13577436 13577454 GATCTGATGGGTAGGTTCC 58 NA Drosophila melanogaster 50 mbl FBgn0053197 FBtr0086994 2 1 4 130 2R 13249486 13249504 AATTCTCTGGCATGGTACC 59 13249598 13260595 AGGGTGTCCAGTAAATGAG 58 NA Drosophila melanogaster 50 CG34365 FBgn0085394 FBtr0112588,FBtr0112589,FBtr0112590,FBtr0112587 1 4 4 80 2R 11344304 11350806 TGATATCGAGGAAGAAACGTC 59 11350848 11350866 CTCTTGAGGAGCATCAGTG 59 NA Drosophila melanogaster 50 CG34187 FBgn0085216 FBtr0112380 3 1 1 84 2R 11181049 11182512 CAGACCATCATCAACTATTCC 58 11180985 11181006 CATGGTTCGATGTGAATTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33506 FBgn0053506 FBtr0091446 3 1 1 94 2R 10745458 10745476 TATGGTTTACACCATGGGT 58 10745320 10745338 GACCCAGAATGCTGTAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Rpn6 FBgn0028689 FBtr0087474,FBtr0087475 2 2 2 129 2R 10638752 10638770 CTTTGAAGGATTCGACAGC 58 10638492 10638659 GGTAATAGCCAGCTTTCCA 59 NA Drosophila melanogaster 50 CG6701 FBgn0033889 FBtr0087607 3 1 1 83 2R 9864799 9864888 AAGAAATATCCAACGCCCA 59 9864734 9864754 GAAGGTCTTTAAGGTGAATCC 58 NA Drosophila melanogaster 50 CG13162 FBgn0033718 FBtr0087904 3 1 1 96 2R 8236024 8236101 TGATGAGCTACTCTCAGCA 59 8236160 8236179 ATTATGTACAAGCAGTCCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13162 FBgn0033718 FBtr0087904 1 1 1 60 2R 8236020 8236099 CAGTTGATGAGCTACTCTCAG 59 8236119 8236139 GAGTTGAGGTACGTAAATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7741 FBgn0033615 FBtr0088118 3 1 1 108 2R 7191260 7191336 TAAGCATATCACTGTTCCCA 58 7191406 7191425 AAGATACGTAAGATTGGTGC 57 NA Drosophila melanogaster 50 mthl13 FBgn0050018 FBtr0088220 1 1 1 88 2R 6679692 6679713 CGTATTCTGCCTATTTCTTGAC 59 6679760 6679860 TGATATAACCTGTCAGTGAGC 59 NA Drosophila melanogaster 50 eve FBgn0000606 FBtr0088390 1 1 1 132 2R 5867056 5867145 ATGAATGCCTATCCAGTCC 58 5867241 5867259 TAGAACTCCTTCTCCAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alc FBgn0033383 FBtr0088624,FBtr0088625 1 2 2 78 2R 5023198 5023275 CTATCGTGTGAACCCACTC 59 5023138 5023156 CATCCTTGATAGACAGGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11191 FBgn0033249 FBtr0088868 3 1 1 283 2R 3889251 3889441 AGTCCTGTCTGAAGTTCCT 59 3888986 3889004 CATCATGTATTTGGTGCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sep5 FBgn0026361 FBtr0088876,FBtr0088877 1 2 2 60 2R 3848536 3848556 GGTTTAAGGAACGCATAATGG 59 3848496 3848515 GGAAACTGGTATATGCTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scra FBgn0004243 FBtr0100216,FBtr0088911,FBtr0088912 1 3 3 151 2R 3479240 3479258 AACCAGAAGGATCCTTGTG 59 3479372 3479455 GCAGCTAAATGTTGTTTCAC 58 NA Nonspecific Drosophila melanogaster 50 vimar FBgn0022960 FBtr0086183,FBtr0086182 2 2 2 158 2R 2865096 2865204 TACTGGTGATGACTCAATGC 59 2864957 2864975 TGCTCCACAAAGTAGATGC 59 NA Drosophila melanogaster 50 Opbp FBgn0050443 FBtr0086109 2 1 1 82 2R 2542551 2542569 TAAACGCTGTGGTAAACGA 59 2542613 2542694 GAAGTTATCCACGTCAAACAC 59 NA Drosophila melanogaster 50 Cyp6w1 FBgn0033065 FBtr0085987 3 1 1 79 2R 2061673 2061812 GAAGATTGGAAAGAACTTGC 57 2061854 2061872 GGGAGCATAGATCCTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7843 FBgn0033062 FBtr0086021,FBtr0086020,FBtr0086018 1 3 3 166 2R 1969443 1969461 CTCTAAGCGTCCAGAATCG 59 1968904 1969243 GTTCCAAAGGCAATTCTCTG 59 NA Drosophila melanogaster 50 PNGase FBgn0033050 FBtr0085971,FBtr0085972 1 2 2 166 2R 1905650 1905668 AAGAAGTACAGAGATGCGC 59 1905853 1905933 TTATTGGTGCGCAATACAC 58 NA Drosophila melanogaster 50 RpL38 FBgn0040007 FBtr0111120 2 1 1 87 2R 403694 403712 GTTCGAGGTTCCTTTACAC 58 403625 403643 TTTACTTGTAGTCCAGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17493 FBgn0040010 FBtr0111255 1 1 1 60 2L 22443162 22443182 CCTCACTCGTATAGTCTATGC 59 22443203 22443281 GGGTAATTTCAGATGTTGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10949 FBgn0032858 FBtr0081367 1 1 1 76 2L 20416089 20416164 GAGGAACTTTGCTACAACC 58 20416031 20416049 TGGTTGATCTGATGACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10186 FBgn0032797 FBtr0081280,FBtr0081281 1 2 2 80 2L 19511020 19511039 TAGTTTCTACAACGACCTGG 59 19510897 19510980 TCCATACATCTCGATATGATGG 59 NA Drosophila melanogaster 50 dnt FBgn0024245 FBtr0081224 1 1 1 106 2L 19339845 19339863 AAATTGTGATGATGGCCTC 58 19339639 19339775 CTGATCGTCAATAACGCAG 58 NA Drosophila melanogaster 50 ham FBgn0045852 FBtr0081123 3 1 1 87 2L 18776363 18776479 CTGGTTATCTGTGGTACGAG 59 18776295 18776313 AGTTGAACAGGACTCTTGG 59 NA Drosophila melanogaster 50 CG31851 FBgn0051851 FBtr0080454 1 1 1 60 2L 13257902 13257920 ATGACCTGGAATCATGGAC 59 13257942 13257962 CCAGTTTACGATAATCCTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16965 FBgn0032387 FBtr0080284 2 1 1 233 2L 11983090 11983163 TAAGGGAGCTAGATTTCCC 57 11983360 11983378 TTGGTGGAATCATCACAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG33695 FBgn0052831 FBtr0091681,FBtr0091682,FBtr0091679,FBtr0091683,FBtr0091680 1 5 5 81 2L 11278902 11278920 AGTATTCAAGTCACAGCCA 58 11278965 11278983 ATTAGACTGTGGATGCAGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17768 FBgn0032240 FBtr0100253 1 1 1 77 2L 10403555 10403747 GTTATTTGCACCTCAAAGGA 58 10403497 10403515 ATATTTGATGGTGCTCCCG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Trp1 FBgn0011584 FBtr0079932,FBtr0079931 1 2 2 80 2L 10011481 10011499 TTGCACTTCTGGATCTTCC 59 10011540 10011615 ATAGTTGCTCTCATATAGTGGC 59 NA Drosophila melanogaster 50 CG13130 FBgn0040965 FBtr0079974 1 1 1 75 2L 9983868 9983886 TCATTAGATGAGTTGGGCA 58 9983811 9983829 GTCCTGGGATCGAAATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13390 FBgn0032031 FBtr0079723 3 1 1 60 2L 8375870 8375888 GGCATACAGTTCCTAAAGC 58 8375828 8375846 TGGCATCTAACACGAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7795 FBgn0032019 FBtr0079611,FBtr0079610 2 2 2 82 2L 8317757 8317849 CACTCGCAACTATCATTGC 59 8317693 8317714 TGTGATGGTATGAGGAATTCTC 59 NA Drosophila melanogaster 50 CG7806 FBgn0032018 FBtr0079600 3 1 1 182 2L 8316116 8316202 TCTCTTTGAAGGCACTGTG 59 8316347 8316366 CAAAGAAGTTGCCTTTGACC 59 NA Drosophila melanogaster 50 CG14537 FBgn0031954 FBtr0079526 3 1 1 60 2L 7840742 7840761 GAGGGATATAACCAGTGGAG 58 7840784 7840802 GAAATCCATATTGGCCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15818 FBgn0031910 FBtr0079442 1 1 1 60 2L 7411296 7411315 ACTAAAGGATATCGAAGGCA 58 7411336 7411356 CTTCTGTCCATCTTTCAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sip2 FBgn0031878 FBtr0079360,FBtr0079357,FBtr0079361,FBtr0079359,FBtr0079358 3 5 5 64 2L 6961828 6961910 TTCCGAAATCAAGCATGTG 58 6961782 6961800 GAATTTGAGGTACCTTCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9550 FBgn0031826 FBtr0079286 2 1 1 204 2L 6497722 6497805 GACCTAAATCTGAACATCATGC 59 6498023 6498042 GGAACAAGTCCTCATAACGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG15418 FBgn0031554 FBtr0077556 2 1 1 218 2L 3621584 3621602 ATTGGAGTACGAAAGTGCA 59 3621320 3621403 GCAGGCTATTATCTGTTCGA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Thor FBgn0022073 FBtr0077524 2 1 1 165 2L 3478760 3479203 GGCACCAAACTTATCTACGA 59 3479331 3479349 ACTTGGTCTGCTTGATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3238 FBgn0031540 FBtr0077569 2 1 1 282 2L 3469212 3469230 TATTCTTCACCGGTTCAGC 59 3468896 3468966 TTCTCAAAGAACTGTCCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15408 FBgn0031523 FBtr0077587 3 1 1 170 2L 3333260 3333279 GCTGTTAATTGCCATACCAC 59 3333471 3333654 AAGGTTCCTCTGATGTTGG 59 NA Drosophila melanogaster 50 CG15406 FBgn0031517 FBtr0077580 1 1 1 101 2L 3310963 3311036 AATGTCCGATTTCCTCACC 59 3311101 3311119 TAGTTGTTGAAGGCGAAGG 59 NA Drosophila melanogaster 50 CG17258 FBgn0031496 FBtr0077668 2 1 1 221 2L 3033081 3033101 AGAATGGAGGTCCTTAAAGAG 58 3032820 3032898 GTTCTTTGTGATCAACCGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31933 FBgn0051933 FBtr0077896 3 1 1 60 2L 1821981 1821999 TATGATAGAGGACAGCCAG 57 1821939 1821959 CTTTAATCTCATCCACTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10869 FBgn0031347 FBtr0113010,FBtr0077917 2 2 2 167 2L 1586997 1587018 TAAGGAACTCATAGATGTTGCC 59 1586788 1586869 AGTAAACTGCTTTGCAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31928 FBgn0051928 FBtr0077929 1 1 1 60 2L 1492785 1492805 GAAATTCTGACAGGAATCCTC 58 1492826 1492845 TCTTAATGACCAGATCTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14341 FBgn0031315 FBtr0077963 2 1 2 66 2L 1166938 1166956 TTACAATTGCGAGACATGC 58 1166986 1167004 TAGTGGACATCGCTTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13690 FBgn0031252 FBtr0078090 3 1 1 60 2L 418603 418622 GAAATAATTCGCGAGGAGTG 59 418562 418580 ACTCCATGACACTTTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11911 FBgn0031249 FBtr0078098 2 1 1 60 2L 320443 320462 TCCATTTACACCAAGGTGTC 59 320402 320422 AGTAGGCACTCTGAATATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17075 FBgn0031239 FBtr0078142 1 1 1 60 2L 265486 265505 TCCACCTATGCTTCTTTCAC 59 265445 265466 ATGTATTCATAGGTGGTCAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41474 FBgn0084034 FBtr0111203 3 1 1 105 X 22150773 22151456 CAATACATTGGTATTGTGCCTG 59 22151522 22151540 CATTTATCGCCGGATTTCC 59 NA Drosophila melanogaster 50 CG5445 FBgn0030838 FBtr0074428,FBtr0074425,FBtr0074427,FBtr0074426 1 4 4 130 X 17198383 17198401 CAAATGGCTGGTACTTTGG 59 17198821 17198840 GATTTGCGGATAGATATCCG 58 NA DesignNoJunction Drosophila melanogaster 50 disco-r FBgn0042650 FBtr0074251 1 1 1 60 X 16014329 16014348 ACAACGAGGAAGATGAACAG 59 16014288 16014306 GCCCGTGATAGATCTAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gbeta13F FBgn0001105 FBtr0074109,FBtr0074106,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107 2 6 6 60 X 15755481 15755499 GCTCATTATCCGACTAAGC 57 15755523 15755614 CTCTTGTTAGATGGTGGCT 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG32626 FBgn0052626 FBtr0073830,FBtr0073833,FBtr0073832,FBtr0073831 3 4 4 81 X 13726180 13726259 GATCATAAAGGAAGTGGCCT 59 13726118 13726136 CGACTTGCCATAGATGGAG 59 NA Drosophila melanogaster 50 hep FBgn0010303 FBtr0073749,FBtr0073747 2 2 3 238 X 12975691 12975709 GTCTAGATCACCGGAACAG 59 12975077 12975095 CTGTGGAATTCAATTGGGT 57 NA DesignNoJunction Drosophila melanogaster 50 cac FBgn0005563 FBtr0073589,FBtr0073588 3 2 10 127 X 11856268 11856287 GAAGATCATTGGATTCGGTG 58 11848305 11854113 TTGAGTTCGAATCATCGTG 57 NA Drosophila melanogaster 50 Hsp60 FBgn0015245 FBtr0073434,FBtr0073435 1 2 2 189 X 11005433 11005514 AACGAGGATCAGAAACTCG 59 11005667 11005685 GATCGATGATGCCCTTCTC 59 NA Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475 1 6 7 168 X 10173217 10217609 AGGTCAAAGAGATGATGGA 57 10173067 10173085 AGTCCCATAATGTACAGGG 58 NA Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475 2 6 7 169 X 10173217 10217610 AAGGTCAAAGAGATGATGGA 58 10173067 10173085 AGTCCCATAATGTACAGGG 58 NA Drosophila melanogaster 50 CG32704 FBgn0052704 FBtr0071333 1 1 1 80 X 9128779 9128867 GTGGATTTACGATGCAACG 59 9128717 9128735 GATAACCTGGACTCACCTG 59 NA Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 3 8 8 60 X 6579593 6579674 GCCTTCAATGTGACTTCTC 58 6579697 6579716 GTGGATAACTGTCCACAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 Rnp4F FBgn0014024 FBtr0070752,FBtr0112876,FBtr0112875,FBtr0070753 3 4 4 80 X 5214529 5214601 CAAATAATGGGCTATCCGG 58 5214467 5214485 ACCATTGTATTCGCTTTCC 58 NA Drosophila melanogaster 50 norpA FBgn0004625 FBtr0070651,FBtr0070650 2 2 4 186 X 4248573 4251080 CTGATGAAGCATTGGATGC 59 4251230 4251248 ACTTGTCGAAGGTGAACTG 59 NA Drosophila melanogaster 50 crm FBgn0000376 FBtr0070495,FBtr0070496 2 2 2 80 X 2629131 2629221 AGGGATATACTGGATCCGT 58 2629069 2629087 GATTTCCTGGAACTTGTGC 59 NA Drosophila melanogaster 50 deltaCOP FBgn0028969 FBtr0070371 1 1 1 162 X 1755125 1755200 TTCTCGAAAGTGATTCCCG 59 1754981 1754999 CATGTGAGTCCATCTCCAC 59 NA Drosophila melanogaster 50 TRAM FBgn0040340 FBtr0070168,FBtr0070167,FBtr0070169 3 3 3 61 X 830596 830614 CATATGGCAAGCCATACAC 58 830639 830657 GTAGAAGAATATCGCGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18166 FBgn0029526 FBtr0070095 1 1 2 116 X 375353 375371 TAGGTTCTGTGATCAAGCA 58 375192 375273 CGATAGTTCAACGAGTGAC 57 NA Nonspecific, InUTR Drosophila melanogaster 50 plexA FBgn0025741 FBtr0089226,FBtr0089223,FBtr0089225,FBtr0089224 2 4 5 118 4 1036234 1037009 AGATTTAGAGTGGAGAACAGG 58 1036136 1036154 CCGGAACATTATAGTGCTG 57 NA Drosophila melanogaster 50 CG11574 FBgn0039878 FBtr0085854 1 1 1 63 3R 27625940 27625958 TGAATGGACTAATTCCGGA 57 27625895 27625913 TACATGGATGACGATGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ttk FBgn0003870 FBtr0085828,FBtr0085826,FBtr0085827,FBtr0085825,FBtr0085830,FBtr0085829 3 6 6 128 3R 27553857 27553875 AACATGATGAACGACTCCT 58 27553964 27554122 GCGACTTTCATTTAGATCATCC 59 NA Drosophila melanogaster 50 ball FBgn0027889 FBtr0085095,FBtr0085096 2 2 2 60 3R 22691160 22691178 CAAACAACGGAGATCTCGA 59 22691118 22691139 CTTAGATTATTGTTGCTGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11892 FBgn0039313 FBtr0089645 3 1 2 139 3R 21108534 21108619 GAAGAAATTCTACGCTGCC 58 21108721 21108740 GATTCCTATAGCAGGCATCC 59 NA Drosophila melanogaster 50 CG13623 FBgn0039205 FBtr0084679 1 1 1 60 3R 20355671 20355689 GTGATCGATACAGTCTCGC 59 20355629 20355647 GTTCGCTATGGTAGTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sav FBgn0053193 FBtr0084356 1 1 1 125 3R 18884837 18884855 TTCAACATGTTTAGCCTGC 58 18884657 18884675 CTTCTCGAGTATCAAAGCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG31203 FBgn0051203 FBtr0083926,FBtr0083924,FBtr0083923,FBtr0083925,FBtr0083927 3 5 5 87 3R 16575021 16575039 GATGGAATTACGGAAAGCC 58 16575089 16575200 GGAACATAACCCTAAACACG 58 NA Drosophila melanogaster 50 CG15025 FBgn0038709 FBtr0083768 1 1 1 60 3R 15316617 15316635 GCACAACTCGCTAAATGAC 59 15316575 15316596 CCTCAAGAGAACAGATAGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eh FBgn0000564 FBtr0083444 2 1 1 86 3R 13272987 13273082 AAGAGATTTGACTCCATGGG 59 13272719 13272737 GTAATCTCCCAGCATGGTC 59 NA Drosophila melanogaster 50 Zeelin1 FBgn0038294 FBtr0083030 1 1 5 99 3R 11002129 11004014 TACAGCCGAACAAAGAAGG 59 11001978 11001996 GCTTGTCCCTCAAGTAGAG 59 NA Drosophila melanogaster 50 PGRP-LB FBgn0037906 FBtr0082398,FBtr0082396,FBtr0082397 2 3 3 190 3R 7279014 7279184 AGATTGGAGAACCGAACTG 59 7278842 7278860 TTATGTGGGTAAAGTGCGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG6744 FBgn0037901 FBtr0082402 1 1 1 114 3R 7259978 7259996 ACATCTCGGATCTAAGGGT 59 7259675 7259900 GATTGGACTCGTTTGAGCT 59 NA Drosophila melanogaster 50 CG12419 FBgn0037769 FBtr0082148 2 1 1 107 3R 5807764 5807783 ATGAATTACTACGTGGAGCG 59 5807853 5807871 CATCACTGAATCCTCGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tgo FBgn0015014 FBtr0082005 3 1 1 60 3R 4844947 4844965 AGCAATTATCAACCCAGGA 58 4844905 4844924 GTTCCCGACTTTAGATCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31473 FBgn0051473 FBtr0081749 1 1 1 79 3R 3638304 3638322 GTGTCTTGAAATGCCAAGG 59 3638578 3638598 CATCACACGAATCATAAACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf1 FBgn0010355 FBtr0081686,FBtr0081684 2 2 3 157 3R 2480377 2480939 CAGATGGCAGATGAATCCA 59 2481058 2481078 TTGTAAGGCCCATTATCATCC 59 NA Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078674 2 1 5 86 3R 1587421 1587439 TTCATTAGCTGGAAGAGCG 59 1586678 1587373 GATTTGCTCCATAACATGTCC 59 NA Drosophila melanogaster 50 Grip163 FBgn0026432 FBtr0076061 3 1 1 147 3L 11990023 11990042 GACTATCTAAGCACCACTCG 59 11989834 11989916 CAGTGTTCAGGTTTAATCTTGG 59 NA Drosophila melanogaster 50 Ard1 FBgn0036064 FBtr0076349,FBtr0076352,FBtr0076351,FBtr0076350,FBtr0076348 3 5 5 67 3L 9966736 9966754 CTGAACCTCTACACCAACG 59 9966785 9966803 CCATCGGCATAGTACTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sif FBgn0085447 FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713 3 5 8 188 3L 5692112 5697030 GTTCCTTCGCAAGATTTCG 59 5698070 5698091 CGTAGTAACCATTTCTTTACCG 59 NA Drosophila melanogaster 50 Sk2 FBgn0052484 FBtr0072984 3 1 1 62 3L 3049408 3049426 CTACCTGATCCTCATACGC 59 3049451 3049470 ATGTTGTAGAGGAAGCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9153 FBgn0035207 FBtr0072670 3 1 2 85 3L 1314021 1314039 CAAAGAGCTCTATTGCTGG 58 1314088 1314173 GACTAGGTGTGAGGATCTG 58 NA Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 1 8 8 80 2R 19817553 19817571 GGATATCATGGAGAAGCCC 59 19817427 19817509 CCAATAGCCATGTAACGGA 59 NA Drosophila melanogaster 50 inaD FBgn0001263 FBtr0071909 3 1 1 90 2R 18745186 18745204 AAGCATAGTAACTACGCCG 59 18745060 18745133 CTCGATCGATCTCATAACCC 59 NA Drosophila melanogaster 50 mei-S332 FBgn0002715 FBtr0071761 1 1 1 72 2R 18010945 18010963 CCACTAGGATACCAGAGGA 59 18011060 18011078 AACACTAATTCCGCTGGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13492 FBgn0034662 FBtr0071741 1 1 2 80 2R 17709905 17709989 TGCAATCGTGAGATCTTCC 59 17709843 17709861 ATCCGATTCACAACTGGAG 59 NA Drosophila melanogaster 50 CG30393 FBgn0050393 FBtr0071620 2 1 1 60 2R 17154143 17154161 AGATGTCTGGCATAAGCAC 59 17154101 17154119 CTCTTCAGTTCCCTTTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10822 FBgn0034478 FBtr0086339 3 1 1 82 2R 15839178 15839197 TATATGACAATTTGCGGGAG 57 15839242 15839260 ACGAACTCTCAGTAGAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14495 FBgn0034293 FBtr0086810 2 1 1 60 2R 13937034 13937052 GATGAGTTCACCATTGCCT 59 13936992 13937010 ACAGATCGTAGGAATCGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10200 FBgn0033968 FBtr0087445,FBtr0087444 1 2 2 70 2R 10696983 10697001 ATTCTGGCTCCTCTTACAC 58 10697097 10697115 GAAACGCTCATCAAAGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8878 FBgn0027504 FBtr0088018,FBtr0088017 3 2 2 92 2R 8034900 8034918 CGATGAAGAGGAGAACCAG 59 8034688 8034844 CTATCCGATTCATCCTCGC 59 NA Drosophila melanogaster 50 Syx6 FBgn0037084 FBtr0088104,FBtr0088103 2 2 3 129 2R 7108119 7108443 CACTATCAGCATCGTTGAG 57 7108536 7108554 GTTCAGGCTCATCTTATCC 57 NA InUTR Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 2 9 9 91 2R 5738884 5738970 GAAGCCGTTAAGGAGATCC 59 5738811 5738829 ATATCGATGACAGTTCCGG 58 NA Drosophila melanogaster 50 Rya-r44F FBgn0011286 FBtr0088637,FBtr0088639 1 2 4 110 2R 4758430 4758448 AAGAGAAAGTCTACGGTGG 58 4758521 4759736 TCAACGAGAAGCTAATTGTG 58 NA Drosophila melanogaster 50 Cyp6a13 FBgn0033304 FBtr0088690 3 1 1 60 2R 4459448 4459469 CAGTCGTAATTTCCTGATATCC 58 4459490 4459508 TTCAAGTCCTTCCATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pax FBgn0041789 FBtr0081214,FBtr0100449,FBtr0081211,FBtr0081213,FBtr0081212,FBtr0081210 3 6 6 60 2L 19404088 19404106 TACTTCGAGATGTTTGCCC 59 19404046 19404065 TGTAGTTCTCCATAATGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ntl FBgn0031934 FBtr0079478,FBtr0079479 2 2 2 114 2L 7712415 7712488 AGGAATTAAGTCGGTTGGC 59 7712566 7712584 CTTTATGCCTTTCCAGGCT 59 NA Drosophila melanogaster 50 NTPase FBgn0024947 FBtr0077680,FBtr0077683,FBtr0077681 1 3 4 143 2L 2882504 2882702 CTTTGTCTTTGGCTTCGTC 59 2882379 2882397 CGATTGAACTTGTAGGCCA 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100309 1 1 8 151 2L 119258 119276 TTACTGAATTGCGTTCCCA 59 119068 119144 TTCGTCAATCACTTCTAGCT 58 NA InUTR Drosophila melanogaster 50 galectin FBgn0031213 FBtr0078101 1 1 1 107 2L 74976 74994 TAAGTTTCACGGTGACTGG 59 75124 75142 ACCGTGGATTAATGTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 shtd FBgn0004391 FBtr0074078,FBtr0074077 3 2 2 80 X 15350326 15350404 CCTATACGATCACGTAACCA 58 15350265 15350283 CGACTCAAATAGGCATCGA 59 NA Drosophila melanogaster 50 CG2061 FBgn0027498 FBtr0073429,FBtr0073430,FBtr0073431 3 3 3 60 X 10987595 10987614 ATTGGCTAAACGATGTACTG 57 10987635 10987655 CATATGGATACCAGGTCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32676 FBgn0052676 FBtr0071503 1 1 1 74 X 10611415 10620959 GTTTATTGGCTCAACGTCC 59 10611359 10611377 AATCATTAACCTGTGCGTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG4586 FBgn0029924 FBtr0071003 2 1 1 60 X 6865441 6865460 TCGATAGCATCTATGGTCTG 58 6865483 6865501 AGTACTGTGTACTCTCCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14531 FBgn0040619 FBtr0085312 1 1 1 83 3R 24632860 24632878 CTCTATGAGCCATGGACAG 59 24632925 24632996 ATCCAGAATGAGCTTCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5053 FBgn0039352 FBtr0084898 3 1 1 96 3R 21489960 21490039 CAGACCAATAGGCAAACTG 58 21490099 21490117 TTGAAGTGTCAGTGTTGTG 58 NA Drosophila melanogaster 50 CG12250 FBgn0039345 FBtr0084895 2 1 2 101 3R 21434507 21434594 GTTAAGAAAGAATCTGGTACCG 58 21419450 21419468 GAAATCGCAATAATGGGCA 58 NA Drosophila melanogaster 50 CG11891 FBgn0039309 FBtr0100223 1 1 3 63 3R 21097769 21097836 CTATGTGGAATTTGCCGAC 58 21097863 21097881 GTTGTACACTCCGTAGCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG5768 FBgn0039198 FBtr0110867,FBtr0084620 3 2 2 114 3R 20212175 20212193 GCTATAATGGACGTGACTG 57 20212017 20212097 TTTGGCAAGCTGAATATGG 58 NA Drosophila melanogaster 50 Tango12 FBgn0051052 FBtr0084367 3 1 1 100 3R 18812460 18812536 CTGTTCCTCAGGGAAATGG 59 18812378 18812396 AACCGGAGTATCATGAACC 59 NA Drosophila melanogaster 50 CG6660 FBgn0039030 FBtr0084338 1 1 1 60 3R 18749535 18749553 TCGTATGCGTACTACATGC 59 18749577 18749657 GCAGCACTATGAATACCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5892 FBgn0038873 FBtr0084052 3 1 1 154 3R 17069448 17069525 TGTATACTTGGGCCAAGAC 58 17069696 17069717 GTACATCAGTGGAATATTCAGC 58 NA Drosophila melanogaster 50 CG31245 FBgn0051245 FBtr0083773 3 1 1 60 3R 15202568 15202588 CTATAACCAAAGATTGCAGGG 58 15202462 15202547 CTTCTCAACAATGGGTTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha100-2 FBgn0028670 FBtr0083656,FBtr0083657 2 2 2 94 3R 14217227 14217308 GTTCATGATGTTCTTCAAGTGG 59 14217154 14217172 TGAACATGATCAACACGGA 59 NA Drosophila melanogaster 50 Spt3 FBgn0037981 FBtr0082537 1 1 1 62 3R 7843126 7843144 AAAGTGGAAGCATACCGAC 59 7843168 7843188 CTACATTATGTCCAGCTAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf12 FBgn0011290 FBtr0082442,FBtr0082440,FBtr0082441 2 3 3 69 3R 7504709 7504728 ATATCTGGTGGTAGCAAGTC 58 7504588 7504677 TAAGCATGGGAGTGTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40400 FBgn0058400 FBtr0111160 1 1 1 60 3L 24524227 24524630 CGTTCACAGTATTATTCGGAC 58 24524187 24524206 GAACACATTCAGTTAGTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 D FBgn0000411 FBtr0075746 3 1 1 60 3L 14169715 14169733 ATGGGTCAACAGAAGTTGG 59 14169673 14169691 GGAATGGATTGTAGCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10083 FBgn0036372 FBtr0075819 2 1 1 130 3L 13477335 13477417 GAATGCATTAACGGATTTGG 57 13477224 13477242 CTGGATCGAAAGTGATCTC 57 NA Drosophila melanogaster 50 Klp68D FBgn0004381 FBtr0076030 3 1 1 60 3L 11789708 11789832 GAGCATAGTTCAAGATCCCA 59 11789855 11789873 TTTCCGTATCGCACATCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG32046 FBgn0052046 FBtr0076409,FBtr0076408 2 2 2 258 3L 9741456 9741474 AACTCTACTTGGACTCGTC 58 9741159 9741235 GTCATTGAAGAGATTGTGCT 58 NA DesignRelaxed Drosophila melanogaster 50 CG13313 FBgn0035941 FBtr0076512 1 1 1 82 3L 8953047 8953130 TGCTGCATTTATCAAAGGAC 58 8953175 8953193 TATGGAGCGGGATAATTGC 59 NA Drosophila melanogaster 50 CG11345 FBgn0035546 FBtr0073334 2 1 1 217 3L 4458028 4458110 GAAAGTCCTTATGCTGGCT 59 4457829 4457847 AATAAACTGGAGGAGGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14997 FBgn0035515 FBtr0073226,FBtr0073225 2 2 2 84 3L 4241427 4241503 TTTAGGAAGATGGGTCGTC 58 4241551 4241569 CTGCGTAATGCTTAACACC 59 NA Drosophila melanogaster 50 YT521-B FBgn0027616 FBtr0073079,FBtr0073078 2 2 2 142 3L 3373085 3373103 GAACAATAGCGACAACGTC 59 3372842 3372982 CAAATTTACCACTCTCGTTGAC 59 NA Drosophila melanogaster 50 CG3589 FBgn0035065 FBtr0072375 3 1 1 110 2R 20672168 20672186 ATTGTGGTCATAGAGTCGG 58 20672260 20672335 AGTCTCAATGTTCTGTCCC 58 NA Drosophila melanogaster 50 Pde8 FBgn0034886 FBtr0072074,FBtr0072077,FBtr0072078,FBtr0072075,FBtr0072076 3 5 5 65 2R 19565138 19565156 ACATATCACAACAGCACCC 59 19565246 19565264 TAGTTGGGTGATGAAAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15118 FBgn0034418 FBtr0086590,FBtr0086592,FBtr0086589,FBtr0113096,FBtr0086591 2 5 5 96 2R 15023520 15023538 TGATCAACGGCTACAACTG 59 15023284 15023461 TTCTTAATTTGCTCCTCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG8214 FBgn0034037 FBtr0087320 1 1 1 259 2R 11575754 11575772 TAACACAGAGTTCGAGCAC 59 11575449 11575467 GATCCATGTCCAGGATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13165 FBgn0033707 FBtr0087892 2 1 1 93 2R 8184832 8185026 GGATGTTGTACAGGTACCTG 59 8185082 8185100 AGCAGATACATCTTGTCGC 59 NA Drosophila melanogaster 50 CG13170 FBgn0033703 FBtr0087996 2 1 1 69 2R 8127944 8127962 CTGTTTGTCCTGTCATTCG 58 8127994 8128013 ATAACTTGGGTGTGGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1776 FBgn0033441 FBtr0088497 3 1 1 82 2R 5608265 5608537 TAAGCGACTCAGAGTTCTC 58 5608201 5608222 CTGTTCCATACGATATACAGTC 57 NA Drosophila melanogaster 50 CG1294 FBgn0033030 FBtr0086035 3 1 1 66 2R 1552910 1552928 CAACGATCATATTCGTGCG 59 1552958 1552976 AGTACTTGTACATCCGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10428 FBgn0032724 FBtr0081132 2 1 1 171 2L 18949217 18949236 AATAGCTTTACGGAGTTCCC 59 18949370 18949444 TCTTGCAATAAGCTCTCGG 59 NA Drosophila melanogaster 50 CG4580 FBgn0032585 FBtr0080865 2 1 1 184 2L 16489425 16489444 AGTACTACCAAGACTTGCAG 59 16489591 16489662 CTGAAAGAATGGCTGAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fu12 FBgn0026718 FBtr0079703 2 1 2 100 2L 8450794 8450812 GAGACTATCGAAATGCGCT 59 8450647 8450666 CTTACGGACATTCTCCAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4495 FBgn0031893 FBtr0113028,FBtr0079405 2 2 2 98 2L 7183805 7183879 ATGATCCCAAGTCTGTTGG 59 7183939 7183959 AGTCTGAGAATGTGATCAGTC 59 NA Drosophila melanogaster 50 CG9175 FBgn0031779 FBtr0079212,FBtr0079211 1 2 2 95 2L 6097245 6097320 TCCCAAAGACGTACAATCC 59 6097168 6097186 TCAGATGCCAATGTAGGAG 58 NA Drosophila melanogaster 50 CG7382 FBgn0031708 FBtr0079130 3 1 1 76 2L 5519254 5519272 GATGCAGTTCTATGTGCAG 58 5519141 5519214 GTTTACCAGAGTCACTCCT 58 NA DesignRelaxed Drosophila melanogaster 50 l(2)05714 FBgn0010607 FBtr0079050 3 1 2 72 2L 4970769 4971092 CACCAGAATATGATTAAGGGTG 58 4970718 4970736 GTGAAATTATGGAGGCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tango14 FBgn0031312 FBtr0077961 3 1 1 109 2L 1159432 1159450 GGTTATGTGAACGGTTCAC 58 1159809 1159829 TTACTGTCTTCGTACAACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:U31:54Ed FBgn0063378 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30211 FBgn0050211 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30231 FBgn0050231 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me18S-G642 FBgn0086035 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG40172 FBgn0058172 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CR41506 FBgn0085789 FBtr0114242 1 1 1 109 YHet 338145 338235 TGCTAAACTACAACTCACCC 59 338307 338325 GTAAGTCCTTCTCACGAGC 59 NA Nonspecific Drosophila melanogaster 50 CG17167 FBgn0039941 FBtr0113729,FBtr0113728 3 2 2 127 XHet 57117 57598 CAAGCATCTTAACGACGAG 58 57689 57707 ATAGCGTGACCTTAATGGG 59 NA Drosophila melanogaster 50 CG17167 FBgn0039941 FBtr0113729,FBtr0113728 1 2 2 91 XHet 53879 56997 CATCGATAAGCCTCCAGAG 59 57049 57070 GAAGATTAAGAACAAAGAGGCC 59 NA Drosophila melanogaster 50 CG2893 FBgn0040030 FBtr0113766,FBtr0113767,FBtr0113768,FBtr0113769 1 4 4 102 XHet 12054 12367 GATAACGATAATCGGAGACAC 58 12431 12449 AATAACACTAGACACCGCT 58 NA Nonspecific Drosophila melanogaster 50 CR32661 FBgn0030356 FBtr0073593 1 1 1 70 X 11812357 11812375 TTCATTCACGAACAGAGTG 57 11812241 11812259 ATTAGTTTGGACATGTGGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG41105 FBgn0069939 FBtr0111201,FBtr0111200 3 2 2 83 X 22268296 22268315 AACAAGGACGTCAAATAGAG 57 22268361 22268379 GTTTGGTCTGGTGTTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41482 FBgn0084042 FBtr0111177 2 1 1 106 X 22083319 22092641 TTTAGGATACCCTACAGTACAC 58 22083234 22083253 CAACAATTGTACCAAAGGCA 59 NA Drosophila melanogaster 50 CG14584 FBgn0031181 FBtr0077213 2 1 1 60 X 21349676 21349694 TCAACTAGAGATCCTAGCC 57 21349634 21349652 GATAAGCAATCGAACCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077204,FBtr0077206 2 2 8 175 X 21247655 21247673 ATATGTTCCAGCGAGAAGC 59 21251117 21251692 CCAAAGGATCTTAGCCTCTC 59 NA Drosophila melanogaster 50 shakB FBgn0085387 FBtr0112570,FBtr0112569 1 2 5 82 X 20663568 20663649 AGACTGTGTACATACAAGAGAC 59 20663507 20663525 CATCGACCACTGTATACGT 58 NA Drosophila melanogaster 50 Pp4-19C FBgn0023177 FBtr0077324,FBtr0077325 3 2 2 144 X 20293018 20293100 CAATTACTGCTATCGCTGC 59 20292892 20292910 TTAGAGAAAGTAGTCCGCC 58 NA Drosophila melanogaster 50 Pp4-19C FBgn0023177 FBtr0077324,FBtr0077325 3 2 2 144 X 20293018 20293100 CAATTACTGCTATCGCTGC 59 20292892 20292910 TTAGAGAAAGTAGTCCGCC 58 NA Drosophila melanogaster 50 sw FBgn0003654 FBtr0089402 3 1 13 178 X 20101688 20103205 AGGATGAATTCACAGTGCT 58 20101528 20101548 TTCAGTCTCCTTCTTGATCTC 58 NA Drosophila melanogaster 50 sw FBgn0003654 FBtr0089406,FBtr0089407 3 2 13 97 X 20105886 20105904 ACTGGTCTACACAAAGCAG 59 20104509 20105411 TAGCATGAGCTTTACGTGG 59 NA Drosophila melanogaster 50 CG34331 FBgn0085360 FBtr0112533 2 1 1 99 X 20016607 20016625 AATGTTCCCGATATTCCCG 59 20016688 20016706 TGATCGTGAATATGCCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14216 FBgn0031054 FBtr0074747 1 1 1 60 X 19559218 19559295 ATAAACATGATGGCCAAGTC 58 19559318 19559336 ACTCCTGGATCAATTCGTC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12204 FBgn0031022 FBtr0074783 2 1 1 77 X 19387626 19387644 TTTAAGGAGCACAAGGACC 59 19387567 19387585 ATGCTGGTACCAATCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8028 FBgn0031010 FBtr0113005 1 1 2 77 X 19173010 19173028 ATTTGAGCTGGGATACAGC 59 19171955 19171973 ATACGAGATGCCAAGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6361 FBgn0030925 FBtr0074630,FBtr0113000 3 2 2 256 X 18374512 18374587 ATGAATGTGACCAATCGTG 58 18374274 18374292 GAGATTACGCCTACGATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG32559 FBgn0052559 FBtr0074458 2 1 1 68 X 17629586 17629605 ATCACATTACTGCCCAAGAG 59 17629636 17629654 TCTCGATGATGTCACATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 par-6 FBgn0026192 FBtr0074456,FBtr0074455 2 2 2 83 X 17598560 17598579 TAACAACGACGATAACTTCG 58 17598624 17598710 TTAAGATCATCCTTTCGCTG 57 NA Drosophila melanogaster 50 B-H2 FBgn0004854 FBtr0074429 1 1 1 195 X 17215117 17216701 AATCGCAGAACCAAATGGA 59 17216859 17216878 CCTGGCGGTAATAGATATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG32563 FBgn0052563 FBtr0074391 2 1 1 60 X 17102868 17102888 TTACTATGTGGACACCTTGAC 59 17102909 17102928 TGGAATCGATGGAATCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9059 FBgn0030810 FBtr0074414,FBtr0074413 2 2 2 145 X 16870244 16870262 AATATGGCCGATCTTACCA 58 16869876 16870075 TATACGTGATGTCTGGAGC 58 NA Drosophila melanogaster 50 CG9699 FBgn0030772 FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369 1 6 7 76 X 16588098 16588116 CATTGAGGCGGTTAAATGC 59 16580767 16580785 TGTAATCGCGATCCTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 crl FBgn0015374 FBtr0074283 3 1 1 109 X 16488187 16488205 AGGACAACTTCTTCGAGTG 59 16488361 16488379 ACTCAGAGGATAGTCGGTC 59 NA DesignNoJunction Drosophila melanogaster 50 caz FBgn0011571 FBtr0074217 3 1 2 96 X 16186056 16186074 GGAGGACACCATCTTTGTC 59 16186132 16186236 CTTGTCTTTCTTGATGATGCC 59 NA Drosophila melanogaster 50 CG9216 FBgn0030726 FBtr0074252,FBtr0074253 2 2 3 161 X 15991598 15991746 GATGATCAATGTGCTCGAC 58 15991455 15991474 ATACTGTTCGGAGACATTGG 59 NA Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 3 9 9 111 X 15788792 15788878 AGTTACCGAATATGGCGAG 59 15788952 15788971 TTTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 3 7 7 83 X 15717700 15717788 GATCCATTGCTTGAGACTG 58 15717832 15717853 TTCGTAGAGATCTTTAAGTCCC 59 NA Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 3 7 7 83 X 15717700 15717788 GATCCATTGCTTGAGACTG 58 15717832 15717853 TTCGTAGAGATCTTTAAGTCCC 59 NA Drosophila melanogaster 50 mRpS30 FBgn0030692 FBtr0074094 3 1 1 60 X 15681959 15681978 CATGACAAGGAGTATGTTCC 57 15681998 15682019 ACCTGTTCTTATTCTTAGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15641 FBgn0030643 FBtr0074035 1 1 1 62 X 15362094 15362112 TCTGTACGTCTTCAATCGC 59 15362138 15362156 TAGCAATTACCGTTGACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9053 FBgn0030606 FBtr0073969,FBtr0073968 1 2 2 60 X 14960238 14960256 CCTACGACAAGGAGATGAC 59 14960196 14960214 GAGTGGTATAGGCACTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9009 FBgn0027601 FBtr0073972 1 1 1 75 X 14829955 14829973 GGATGACTTCATGAGGTCG 59 14829468 14829916 CATAAAGAGGGCAATTGGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG13403 FBgn0030544 FBtr0073928 2 1 1 64 X 14085586 14085604 TCTGGTTATTACTCGGGTG 58 14085540 14085558 TAGTTCTTGTAGCTGGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr12A FBgn0030494 FBtr0073784 1 1 1 60 X 13437904 13437925 TACTAGATCGATTCGATAACCG 59 13437945 13437964 TCCAACTCGAATCGATACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1640 FBgn0030478 FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769 1 6 6 82 X 13268114 13268132 ATTCAACCGTTAGACGTCC 59 13268315 13268333 ATGTTATCCAGTGTGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2111 FBgn0030223 FBtr0071492 1 1 1 61 X 10554376 10554449 CATACGCAATTATTGCAGC 57 10554474 10554492 CAATTAGCGGTGTCATCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG1889 FBgn0030164 FBtr0071409 3 1 3 168 X 9859796 9859876 TCTCGATTGTAGCCTAGAC 57 9860008 9860026 GTTTCTGACCTTCTGATCG 57 NA Drosophila melanogaster 50 su(r) FBgn0086450 FBtr0071338,FBtr0071337 3 2 2 236 X 9091509 9091527 TTTCTTTGGTCCCTACCAG 58 9091233 9091309 ATGCACATGTCATCATCGA 59 NA DesignRelaxed Drosophila melanogaster 50 rdgA FBgn0085373 FBtr0112550,FBtr0112552 3 2 3 96 X 8917351 8918116 GTGGAAGAGCCCTATACTG 58 8918299 8918317 TCCTTGTTCATGTAGTGCA 58 NA Drosophila melanogaster 50 oc FBgn0004102 FBtr0089650 1 1 2 184 X 8534548 8536499 GGCGATCTATGCTATCCAG 59 8527985 8534400 TTGAACCACACCTGTACTC 59 NA Drosophila melanogaster 50 CG12111 FBgn0030050 FBtr0071232 2 1 1 60 X 8464753 8464772 CCATCGGAGATTGATACCAC 59 8464712 8464733 GCTCGATGTAGTAATAGTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PIP82 FBgn0024943 FBtr0071235 3 1 1 112 X 8419964 8419982 TCCCAATCAGAATCCATCG 59 8419795 8419889 AGTAGCTATTCTCTTCGTCG 58 NA Drosophila melanogaster 50 org-1 FBgn0021767 FBtr0071244 1 1 1 85 X 8345442 8345460 ATTGGATGAAGCAGATCGT 59 8345278 8345396 GGAGTTCAGAATGATATGTCCA 59 NA Drosophila melanogaster 50 RpS6 FBgn0004922 FBtr0071137,FBtr0071135 1 2 3 268 X 7794950 7794968 TTCTACGAGAAGCGTATGG 58 7794187 7794205 TTCTTCAAGACGACCAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG18624 FBgn0029971 FBtr0071140,FBtr0071141 3 2 2 126 X 7787312 7787330 GTCTTGGGACTGGATAAGC 59 7787204 7787222 CGTATAGGGCACTCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CheA7a FBgn0029948 FBtr0071055 3 1 1 60 X 7272239 7272257 TTGGTTCATAGTTGTCGAG 57 7272280 7272299 CCATCGTAAAGGTGTTTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100214,FBtr0100208,FBtr0100200,FBtr0100215,FBtr0100217,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100201,FBtr0100206 3 11 15 113 X 6979981 6981658 CCATCCGGAATGGATACAG 59 6979886 6979904 TAAATTGTTGGCACTCCCA 59 NA Nonspecific Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 3 12 15 240 X 6978842 6979199 CTTTGTTCGGTACAACAAGC 59 6978621 6978640 AATTGATCTACCTCTGTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 3 12 15 240 X 6978842 6979199 CTTTGTTCGGTACAACAAGC 59 6978621 6978640 AATTGATCTACCTCTGTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 pod1 FBgn0029903 FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966 3 5 6 107 X 6701674 6702856 CAATTATTCCACGTTTGGGT 58 6702926 6702944 AGATATTCTCGTGGGATCC 57 NA Drosophila melanogaster 50 RpL17 FBgn0029897 FBtr0070982 1 1 4 202 X 6638071 6638089 AATCAACACGTCGAATTGG 58 6636285 6637104 GTGTTCTTGAAGTGCACAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG17717 FBgn0029877 FBtr0070944,FBtr0070943 1 2 2 60 X 6484257 6484276 ACTAGCCCATATCATCTTGC 59 6484361 6484382 GCTGCCTTGATTCATATTATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33668 FBgn0053668 FBtr0091647 1 1 1 60 X 6313194 6313213 AAAGTTTGTAAGCGACACTC 58 6313153 6313173 GTTGCCATTAAGTAACTGCTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15764 FBgn0029817 FBtr0070820 3 1 1 61 X 5763282 5763300 CTATCGTCAATTTGGTGCA 58 5763325 5763343 TGTATAGCCATTCACGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3239 FBgn0029769 FBtr0070793,FBtr0070792 1 2 2 60 X 5388821 5388839 CCAACTATGGGCCATAGTC 59 5388779 5388797 ATCGCTCTTGGATATTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mcm3 FBgn0024332 FBtr0070762 2 1 1 183 X 5219595 5219613 CTATCGCAATCCCAAGGAG 59 5219834 5219852 CATGAACTCCACGGATAGG 59 NA DesignNoJunction Drosophila melanogaster 50 ec FBgn0000542 FBtr0112801,FBtr0070606,FBtr0112802 3 3 3 60 X 3746876 3746896 TAATCCAGGACAAGATTGGAG 59 3746918 3746936 TTATCCACACTCTGTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10793 FBgn0029656 FBtr0070536 3 1 1 60 X 3210169 3210189 AGAATGGATACTATGCGAGTG 59 3210129 3210147 TATTCGTCGGTTAGACGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2694 FBgn0024991 FBtr0070482,FBtr0070483,FBtr0070481 1 3 3 103 X 2609385 2609403 GAAACCGACATGAAGACAC 58 2609550 2609568 ATCTCGTTCAGATTCTGGT 57 NA DesignNoJunction Drosophila melanogaster 50 Csat FBgn0024994 FBtr0070501 2 1 1 221 X 2597412 2597431 ATACGCTGAAGTACATCAGC 59 2596698 2596716 CAATGATGGTCTTGTGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 br FBgn0000210 FBtr0070266 1 1 7 123 X 1531146 1531164 CCAATATCGATCCCTCAGC 59 1537128 1537146 AATGTGGAGAGGTTAAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0070176 3 1 5 152 X 935429 936303 ATTGACAGATACGATGTGC 57 936418 936437 ATTGTACAGAAACAGGTACC 57 NA Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 2 8 8 61 X 551358 551376 GGATGATGAGAGCAAGGAG 59 551401 551419 TTAGGAAATCTGCATCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ewg FBgn0005427 FBtr0100581,FBtr0100580 1 2 8 82 X 165638 167225 CAACAGCAATTACACCACG 59 165574 165594 GATTATTTGGGTCTACCTGGA 58 NA Drosophila melanogaster 50 G9a FBgn0040372 FBtr0070063 3 1 1 81 X 146766 146785 CATCAGGACTACAGATTCCC 59 146826 147112 CGTAGTCAAAGCATATTTCCTC 59 NA Drosophila melanogaster 50 CR40642 FBgn0085761 FBtr0114211 1 1 1 60 U 9503526 9503545 TGAAGATTGAGATAGTCGGG 58 9503568 9503586 CAGAACGAGCACATAAACC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR41583 FBgn0085805 FBtr0114259 1 1 1 60 U 6962694 6962713 GACAAAGTGACTTAGTGCTG 58 6962653 6962673 CTAACAAGGACTTAGTAGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40196 FBgn0058196 FBtr0113830,FBtr0113829,FBtr0113831 1 3 3 119 U 1092306 1092324 AGATCTAAGTTGCGATCCT 57 1092152 1092224 TAAAGAGAATTCACTGCTCG 57 NA Drosophila melanogaster 50 CG40091 FBgn0058091 FBtr0113789 3 1 1 122 U 131203 131221 TTGAGACGTTCGGTAAAGG 59 125409 125427 CGCAATATTCCTTGAACGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33521 FBgn0053521 FBtr0091471,FBtr0091472 3 2 4 192 4 1207179 1207197 TTTCGGAAATGGATTACCC 57 1208238 1208378 CTTCTCAGGTATTGTAGATCG 57 NA Drosophila melanogaster 50 CG32016 FBgn0052016 FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232 1 6 6 82 4 974520 974659 GCACTACTCTCAAGAATTGC 58 974457 974475 GAGTTGGAGAGTTACCGTG 59 NA Drosophila melanogaster 50 CG1732 FBgn0039915 FBtr0089972 1 1 2 81 4 654475 654553 TGTATTACACAAGGTGGCA 58 654598 654616 ATATGAGCCACAGTAAGCA 58 NA Drosophila melanogaster 50 mav FBgn0039914 FBtr0100502 2 1 2 281 4 645271 645398 GGTCAATATAAGCCAAGCTG 58 645009 645027 TTCATTGTATCCTGTTCGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 1 7 7 82 4 208987 209060 CGGATCATAGACTTACGGA 57 208923 208941 GAAGCATGGTTTAGTCAGG 58 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156 3 9 10 82 4 103361 106346 ATCCTAAGATGGGCTTAACTC 58 106387 106408 CATATCTGAACTTAGCATTGGG 58 NA Drosophila melanogaster 50 snoRNA:Psi18S-1377e FBgn0083047 FBtr0113594 2 1 1 71 3R 26032799 26032817 TCTGGACGTTGTTCAAGTC 59 26032746 26032764 AACATTGTGGAGTGATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ttk FBgn0003870 FBtr0085828,FBtr0085826,FBtr0085827,FBtr0085825,FBtr0085830,FBtr0085829 1 6 6 126 3R 27553859 27553877 CATGATGAACGACTCCTCC 59 27553964 27554122 GCGACTTTCATTTAGATCATCC 59 NA Drosophila melanogaster 50 CG1607 FBgn0039844 FBtr0085786,FBtr0085785 1 2 2 82 3R 27214820 27214896 TACATATGCGAAACTGCTG 57 27214942 27214960 TAAAGTATTGCGTGTTGCC 58 NA Drosophila melanogaster 50 CG31005 FBgn0051005 FBtr0085769 2 1 1 90 3R 27066774 27066794 GCTGGTGATTACATCTTATCG 58 27064197 27066722 CGGTCAAGATCTGACTCAG 59 NA Drosophila melanogaster 50 CG15533 FBgn0039768 FBtr0085626 1 1 1 114 3R 26256515 26256608 TGATGAGAAAGTACTGGCG 59 26256686 26256704 GAATTGATGGTCACAGCAG 58 NA Drosophila melanogaster 50 sima FBgn0015542 FBtr0114597 1 1 2 94 3R 25907961 25907979 TACTGCTGGATTCTTAGCC 58 25908036 25945862 GGAATCGTCATCCTTATGAC 57 NA Drosophila melanogaster 50 CG11504 FBgn0039733 FBtr0085548,FBtr0085547,FBtr0085549 1 3 3 60 3R 25824888 25824907 GATAGCTACTTTGAGGAGCA 58 25824930 25824948 CGTAGTACATGCGTTTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS8 FBgn0039713 FBtr0085489 3 1 1 217 3R 25688837 25688855 ATGAAGAAGTACCTGGAGC 58 25689254 25689272 CAAATCATGTCTTGCAAGC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG2006 FBgn0039664 FBtr0085425 2 1 1 145 3R 25316053 25316071 GATAACCTGGAGATCACCG 59 25316180 25316198 ATGAGATCGTACATGTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100335,FBtr0100339,FBtr0085093,FBtr0085092 3 4 9 103 3R 22699390 22699590 CTAGATTGGATGCTCTTTGG 58 22699306 22699326 TCCTGCTTAGTAACTCTAAGC 58 NA InUTR Drosophila melanogaster 50 MED28 FBgn0039337 FBtr0084836 1 1 1 69 3R 21303057 21303075 CAAGGACGAGAATCAGGAC 59 21303108 21303126 ATTGTAGTGCTTCTGCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6995 FBgn0039229 FBtr0084699,FBtr0084700 2 2 3 94 3R 20646482 20646831 CAGATGAAGATCATGGAGTCC 59 20646887 20646905 CGCTTACGATCAGTAACGT 59 NA Drosophila melanogaster 50 Syx18 FBgn0039212 FBtr0084670 2 1 1 60 3R 20450761 20450780 TGGAACAGATCTATCTGGAC 58 20450720 20450739 CTATAGGTTTCCAGTTCGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13624 FBgn0039209 FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795 1 6 6 107 3R 20386540 20386627 CATTAAGGTGTACAAGCACAG 59 20386453 20386471 CTTAGCTTGTCCAGTTCCT 58 NA Drosophila melanogaster 50 Acp95EF FBgn0002863 FBtr0084561 2 1 1 61 3R 20054874 20054893 CAGATTTGAGACGAAAGACC 58 20054917 20054935 ATTAACCAGCGAGTGACTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10225 FBgn0039110 FBtr0084468 3 1 1 66 3R 19577600 19577618 GAAACGCAAATACGAGGAG 58 19577552 19577572 CACGTCGATAATGTTGATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16732 FBgn0039086 FBtr0084419 1 1 1 60 3R 19361166 19361184 TTTGGTAATATGCGTTGGG 58 19361124 19361145 GAGAGTTGATATCCATAACCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 orb FBgn0004882 FBtr0100228,FBtr0084386,FBtr0084385,FBtr0084384,FBtr0100227 2 5 5 80 3R 19092488 19092506 TGATTCTCACTGTGGTAGG 58 19092371 19092446 CAAGGAATGACTTCAACATCC 59 NA Drosophila melanogaster 50 CG17119 FBgn0039045 FBtr0084357,FBtr0084358 1 2 2 102 3R 18881579 18881597 TACTCGAAATCAGTCGGTG 59 18881430 18881515 GAACACATCCTTCACAATCTC 58 NA Drosophila melanogaster 50 CG34149 FBgn0083985 FBtr0111020,FBtr0113489 2 2 2 64 3R 18206399 18206417 GATCAAAGCCTCTGTTCTG 58 18206442 18206463 TCTGATAAGAACTCCTGTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067 3 1 22 81 3R 17200835 17200853 AACAGTCCCAGAACTACAG 58 17181270 17200790 TCACCTAAATCTTGAGCCT 57 NA Drosophila melanogaster 50 CG5191 FBgn0038803 FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905 1 5 5 88 3R 16396363 16396821 TGTCGACAGGTAAATCCTC 58 16396873 16396891 ATCACGTTGTCTATCTCCC 58 NA Drosophila melanogaster 50 CG4342 FBgn0038791 FBtr0083898 1 1 1 60 3R 16207789 16207902 CATCGATAATCAGACGCAG 58 16207747 16207765 GATGATGTTCTCCTCGGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG4686 FBgn0038739 FBtr0083816 1 1 1 238 3R 15690793 15690811 GATCACTCTATCGACTGGC 59 15691013 15692147 CAAAGTGCCAGTGAATACG 59 NA DesignRelaxed Drosophila melanogaster 50 CG4662 FBgn0038735 FBtr0083813,FBtr0083814 3 2 2 111 3R 15676840 15677559 AACCAAGCGAATTATGGAG 57 15677633 15677756 GTTTACATAGTTCTCCAGGG 57 NA Drosophila melanogaster 50 CG11407 FBgn0038733 FBtr0083790 1 1 1 81 3R 15607737 15607808 TCCAGTCATTCCTTAACCAC 59 15607852 15607870 TTACAGTGGTAAGCAGACC 58 NA Drosophila melanogaster 50 CG16718 FBgn0038721 FBtr0083805,FBtr0083806 2 2 2 80 3R 15461808 15461826 AAAGTCATTGATTCGCCCA 59 15461689 15461765 TCGAAAGTCCGTATATCTGC 59 NA Drosophila melanogaster 50 CG6231 FBgn0038720 FBtr0083810,FBtr0083809,FBtr0083807,FBtr0083808 1 4 4 80 3R 15444855 15444873 CGACTTTAATCGCTACCAG 57 15444732 15444811 TGCGTAAAGTAATGCATCG 58 NA Drosophila melanogaster 50 Dys FBgn0024242 FBtr0110918,FBtr0110917,FBtr0083764,FBtr0110919 3 4 8 81 3R 15310654 15310767 CGATAGTGATACGAGTCGC 59 15310812 15310830 AGACAATGATTCCAGGACC 58 NA Drosophila melanogaster 50 Dys FBgn0024242 FBtr0083765 1 1 8 157 3R 15308359 15310765 ATTGCAATTGTCGTGAGTC 58 15310886 15310904 CGATCATCCAGATTCTGGG 59 NA Drosophila melanogaster 50 CG14291 FBgn0038660 FBtr0083724 3 1 1 60 3R 14737265 14737283 CCTTGTTGCAGTACTACCA 59 14737223 14737242 AAGGGATCCGTCTTAATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7694 FBgn0038627 FBtr0083632 1 1 1 93 3R 14416140 14416251 GCTGAAGAAGACGAATTCC 58 14416308 14416326 TTCATCCTGCCTAAACCTG 59 NA Drosophila melanogaster 50 fru FBgn0004652 FBtr0083651,FBtr0083649,FBtr0083643,FBtr0083652,FBtr0083648,FBtr0083642 2 6 13 84 3R 14256555 14256573 CCAGACGGACAATATCGAC 59 14252824 14252843 ATGATTTCGATCCAGTTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 PKD FBgn0038603 FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592 1 4 4 196 3R 14131625 14132352 AGCAGCTCACTGAATATCC 59 14131447 14131465 GTATTGTACTGGCAGTCCC 59 NA Drosophila melanogaster 50 alt FBgn0038535 FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416 2 6 6 164 3R 13500933 13500951 GTAGCAACCACAATAGCAC 58 13500724 13500805 ATGTGTTTGTCGTCTTGGT 59 NA Drosophila melanogaster 50 alt FBgn0038535 FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416 1 6 6 163 3R 13500932 13500950 TAGCAACCACAATAGCACC 59 13500724 13500805 ATGTGTTTGTCGTCTTGGT 59 NA Drosophila melanogaster 50 AttD FBgn0038530 FBtr0083470 3 1 1 60 3R 13451400 13451418 CATTTCACAGTCATAGCCG 58 13451442 13451460 CCAGTTTGCAAATTGAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hmx FBgn0085448 FBtr0112715 1 1 1 177 3R 13391176 13391194 ATTGGGTTTCATATCGCAG 57 13392859 13392877 ATTATTGTTGTTCGGGCTC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG31419 FBgn0051419 FBtr0083433 2 1 1 95 3R 13110932 13110950 AAGAATTACATCCTGCCGG 59 13111009 13111027 CTTCTTTGGATGGCATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14897 FBgn0038434 FBtr0083310 3 1 2 158 3R 12292102 12292197 GGTTCCGAAGATGATAGCA 59 12291962 12291981 TTCCCTTAGCCCTTTAAAGC 59 NA Drosophila melanogaster 50 CG34404 FBgn0085433 FBtr0112669,FBtr0112668,FBtr0112667 2 3 3 60 3R 11191520 11191538 TGAATCCGGAGAAGATCCA 59 11191416 11191497 GACCAGATTAATTTGCTCGT 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG34404 FBgn0085433 FBtr0112669,FBtr0112668,FBtr0112667 1 3 3 80 3R 11190290 11190366 AATCCAACCACAATCTGGG 59 11190228 11190246 TCTTCTGCTCTAGCTTCCT 59 NA Nonspecific Drosophila melanogaster 50 CG14866 FBgn0038315 FBtr0083081 3 1 1 61 3R 11143392 11143410 CAAGGGTCTAAACTCCCAC 59 11143434 11143453 CCATGATCTCCTCATTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957 3 1 12 101 3R 11126775 11126793 CTCAACACCCGTCTAAAGG 59 11128937 11132073 GATTAGGTCGTCTTCGAGC 59 NA Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089963,FBtr0089966,FBtr0089967,FBtr0089962,FBtr0089961,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 1 10 12 204 3R 11120874 11120892 TTGCTCGAAGAAGACTTGG 59 11122404 11122422 ATTTCTTGTCAGCCTCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9611 FBgn0028487 FBtr0112937,FBtr0112938 2 2 5 136 3R 9522483 9522559 TTTCCGGATAGCTTTCACC 59 9522365 9522383 TGGCGATCATATTCCTGAC 59 NA Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 1 8 8 283 3R 9504401 9504476 ACACGACGTAAATCAGGAG 59 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 sqd FBgn0086897 FBtr0082854,FBtr0082857,FBtr0082856,FBtr0082855 3 4 4 252 3R 9468818 9468901 AACGACTGAGAAGGAACTC 58 9468584 9468602 CTCATCGCTGATCTCTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 beat-Vb FBgn0038092 FBtr0082684 2 1 1 95 3R 8759111 8759131 GCTTTAATGACTTCGTAGAGG 58 8759187 8759265 CCAGAGAAACCTTTATCCCA 59 NA Drosophila melanogaster 50 CG14394 FBgn0038079 FBtr0114499,FBtr0113228,FBtr0114500 2 3 6 66 3R 8522002 8522020 GTCTGTCCATAGTCATGCA 59 8522474 8522492 TTTATGTTGAGACTCCCGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG18547 FBgn0037973 FBtr0082506 3 1 1 62 3R 7805322 7805340 GCTTAAGGAGTTCCTGACC 59 7805221 7805239 TATCTGGCATAGGTGAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG6950 FBgn0037955 FBtr0082522,FBtr0082519,FBtr0082520 3 3 4 118 3R 7647072 7647092 CGAGGTGATCATTATTGAACC 58 7646915 7646933 CAGAGCTTATTGGTCCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33698 FBgn0053698 FBtr0091686 1 1 1 60 3R 6970605 6970623 ATACTCGAGGATTTGGACG 58 6970563 6970584 CAGGATTCGTGTAAATTTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3996 FBgn0037800 FBtr0082224 1 1 1 96 3R 6067376 6067394 AAAGCTAGGACCCATTGAG 58 6067454 6067528 GTAGTAGAGCTGCAATCCT 58 NA Drosophila melanogaster 50 Best1 FBgn0040238 FBtr0082183,FBtr0114590 3 2 2 80 3R 5991953 5992985 CAAATTGCTGCTCAGATGG 59 5991891 5991912 GCATAGTAAATGGTCAAGAAGG 59 NA Nonspecific Drosophila melanogaster 50 CG6241 FBgn0037792 FBtr0082185 1 1 1 110 3R 5969268 5969289 CCATAAGACATTCAAGAAAGGC 59 5968646 5969199 TCTAGATTGCGCTTAGTTCTG 59 NA Drosophila melanogaster 50 CG12807 FBgn0037772 FBtr0082171 2 1 1 192 3R 5825480 5825626 GAATATGGGAATCTGCGAC 58 5825934 5825952 AAACGGATGATTCACAGAG 57 NA Drosophila melanogaster 50 CG16908 FBgn0037741 FBtr0082166 2 1 1 100 3R 5577208 5577284 AGCCTTAGTGATGTGATACC 58 5577127 5577146 AGTTTGTACTCCTGAGTCTG 58 NA Drosophila melanogaster 50 Kap-alpha3 FBgn0027338 FBtr0082108,FBtr0082106,FBtr0082107 3 3 3 158 3R 5402864 5402942 GAAAGACCAGGATGAAATGC 59 5402725 5402743 TTCTTCAGGTCAATGGACG 59 NA Drosophila melanogaster 50 Rel FBgn0014018 FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338 3 4 4 60 3R 4870881 4870899 CACTACATACGACCTTTGC 58 4870839 4870857 TTCCGGCATTATTCTTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11967 FBgn0037646 FBtr0081958 2 1 1 87 3R 4807811 4807831 CATAATAGTTTGCGGACACAG 59 4807880 4807969 TCGGTTAAGCTTAGAAGCG 59 NA Drosophila melanogaster 50 CG2091 FBgn0037372 FBtr0078678 3 1 1 149 3R 1580055 1580074 ATCAACAATATCTACGGCAG 57 1579864 1579882 GTAGAGATCAGGAGTCTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG2185 FBgn0037358 FBtr0078732 1 1 1 61 3R 1479037 1479055 CAAGATCTCGTTCGAGGAC 59 1478994 1479012 ACATCTTCTGATCCACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CRMP FBgn0023023 FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686 3 4 4 114 3R 1400049 1400129 CTACATCAAGAATGGCGAG 57 1400403 1400421 GCCAGGTATCGTTATTTCC 57 NA Drosophila melanogaster 50 Itp-r83A FBgn0010051 FBtr0078687 3 1 2 93 3R 1357058 1357149 TATTGATTCTGTCGAAGAGGAG 59 1357421 1357440 GGCCAAAGATGTCATTACTG 58 NA Drosophila melanogaster 50 kkv FBgn0001311 FBtr0078798,FBtr0078800,FBtr0078799 2 3 3 98 3R 1204858 1204876 TAAGAATTCGGTGATGGCC 59 1204709 1204796 TTGTTGTTAATCGGTGCTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG11999 FBgn0037312 FBtr0078807 3 1 1 148 3R 1180313 1180332 ACTACTTCTTACAGGACTGG 58 1180057 1180075 CAGATCCGTACTTGACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31522 FBgn0051522 FBtr0078941,FBtr0078939 3 2 4 148 3R 272465 272486 CCTCACATATGTCTATCTGGTC 59 271122 272149 AACCGGAAATGCCTATCTC 59 NA Drosophila melanogaster 50 CG31522 FBgn0051522 FBtr0078942 1 1 4 123 3R 271958 272154 TTTATGAGTGCTTGATGGG 57 270250 270268 TTCGAGAAGTAGTACCACC 58 NA Drosophila melanogaster 50 CG14645 FBgn0040687 FBtr0078908 2 1 1 60 3R 160991 161011 GTGTGAGACACTTAACAAACC 59 161033 161051 CATGAATCCTGTTTCGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arf79F FBgn0010348 FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572 1 6 7 81 3L 22862819 22862837 CTTTACAGTGTGGGATGTG 58 22862563 22862777 GATAAGACCTTGTGTATTCTGG 58 NA Drosophila melanogaster 50 CG11425 FBgn0037167 FBtr0078507 1 1 1 70 3L 22467998 22468016 ACTTATTGTCCTGGTGGAG 58 22468050 22468068 CATCACAGAAGAAACCACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syn1 FBgn0037130 FBtr0078450,FBtr0078451 2 2 2 246 3L 21739983 21740001 ACTACCAGAGGGAGTTCTC 59 21739703 21739774 TCCATGTCCAGTTCAATCTC 59 NA DesignRelaxed Drosophila melanogaster 50 Aef1 FBgn0005694 FBtr0078349,FBtr0078350,FBtr0078348 3 3 3 117 3L 21429089 21429107 ACCATGTGAAGATCCACAC 59 21429250 21429269 TAGACTTTGTCCATGACGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CSN3 FBgn0027055 FBtr0078269 1 1 1 109 3L 20833655 20833673 TCTTCGAAGTCTGCATCAC 59 20833493 20833582 ATACGCTATCTTGCCTTCG 59 NA Drosophila melanogaster 50 CG11796 FBgn0036992 FBtr0078226,FBtr0078225 2 2 2 141 3L 20432114 20432190 CTACCATCAAGACGTACGG 59 20431991 20432010 TCAATGAAGTTCAGCTTGGT 59 NA Drosophila melanogaster 50 CG7757 FBgn0036915 FBtr0074891,FBtr0074892 3 2 2 60 3L 19904506 19904524 CAGTTATACTGACCCAGGA 57 19904548 19904566 CGTATGCTTATCTTACCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fibp FBgn0036911 FBtr0089595,FBtr0089596,FBtr0089594 3 3 3 98 3L 19809913 19809981 ATACTTACCAGCACACTGG 58 19809833 19809852 TTTCCTTGTCGAGTAGACAG 59 NA Drosophila melanogaster 50 CG9392 FBgn0036895 FBtr0074948 2 1 1 60 3L 19614225 19614243 GACGAACACAAACTACTGG 58 19614267 19614285 TTCTCTTGATCCGCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rept FBgn0040075 FBtr0074988 2 1 1 60 3L 19249613 19249631 CACTAACTATCGCAGTCCG 59 19249654 19249673 TATGATGATCATGCGATCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18363 FBgn0036808 FBtr0075090 1 1 1 80 3L 18690908 18690927 CAACGGATCTGATTAACGTG 59 18690783 18690867 CGAAGACATGCTTATAGTTGC 59 NA Drosophila melanogaster 50 GNBP2 FBgn0040322 FBtr0075097,FBtr0075094,FBtr0075095,FBtr0075096 2 4 4 86 3L 18667069 18667159 CCAAGCAATTGAGAATTGC 57 18667001 18667020 CATATAAGTGGTTTCCGGAG 57 NA Nonspecific, InUTR Drosophila melanogaster 50 term FBgn0003683 FBtr0075112 2 1 1 206 3L 18586681 18586699 CCCATAATCTCCAGCTTCG 59 18586493 18586511 AATATCCATAACGGCCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 W FBgn0003997 FBtr0075133 1 1 1 262 3L 18165271 18165289 TAATCCAGTCTGCCATACC 58 18163059 18163077 AAGGGCTAGCTGATTTCAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13698 FBgn0036773 FBtr0075137 1 1 1 60 3L 18083552 18083570 GGGTTACTACGATAGTCCA 57 18083449 18083467 AAACGGTCCGAAATAACCT 59 NA DesignNoJunction Drosophila melanogaster 50 Eip75B FBgn0000568 FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149 3 4 4 111 3L 17948399 17948417 GAGATGGATATCGTTGGCT 58 17948141 17948324 TGAGTATTCCGATCTGCTG 58 NA Drosophila melanogaster 50 Pep FBgn0004401 FBtr0075198 1 1 3 184 3L 17636609 17636627 TTTGGTAACAACATGCGAC 58 17633134 17633152 ATGGAGACTCCTTGGTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6333 FBgn0036731 FBtr0075224 2 1 1 60 3L 17473857 17473876 AAAGACTCAGAAGATGTCCT 57 17473816 17473834 GACAGTTTGTAGAGACTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4998 FBgn0036612 FBtr0110866 3 1 2 142 3L 16336460 16336479 CCTCTACAACATTCCCACTC 59 16336584 16336909 TTCCATAATAGGCACGCTG 59 NA Drosophila melanogaster 50 CG10516 FBgn0036549 FBtr0075512 3 1 1 146 3L 15962650 15962733 AAAGTACCGAGAAACCGAC 59 15962843 15962861 AGGTAGTGGAAGTACTCGT 59 NA Drosophila melanogaster 50 pHCl FBgn0036542 FBtr0100035 1 1 4 89 3L 15861721 15861739 AGTCCAGTTCGGATAAGGA 59 15860711 15861668 TCAGAGTGCCATTTACAGG 59 NA Drosophila melanogaster 50 RecQ5 FBgn0027375 FBtr0100362,FBtr0075715,FBtr0075714 3 3 3 83 3L 14621498 14621575 GATGGAAGCTTAGGAGATGG 59 14621434 14621455 CTGATCGTTGTTTATCATCTGC 59 NA InUTR Drosophila melanogaster 50 shd FBgn0003388 FBtr0075675,FBtr0075676 3 2 2 96 3L 14613848 14613923 TAGAAACGTTAGCCAACAC 57 14613983 14614001 CGATACTCGCAGAATTCAC 58 NA Drosophila melanogaster 50 Hsc70Cb FBgn0026418 FBtr0075771,FBtr0075772,FBtr0075773 2 3 3 200 3L 14032908 14032926 GATGATATCGACGTCTCGT 58 14033087 14033172 GTTAAAGACCTGCTCAATAAGC 59 NA Drosophila melanogaster 50 Hsc70Cb FBgn0026418 FBtr0075771,FBtr0075772,FBtr0075773 2 3 3 200 3L 14032908 14032926 GATGATATCGACGTCTCGT 58 14033087 14033172 GTTAAAGACCTGCTCAATAAGC 59 NA Drosophila melanogaster 50 caps FBgn0023095 FBtr0075832,FBtr0111005,FBtr0075833 3 3 3 158 3L 13222138 13222156 ATTTGTAGCTGTGCTTTCG 58 13231812 13244269 GTTCTGCCGGTATAATCCT 58 NA InUTR Drosophila melanogaster 50 CG11255 FBgn0036337 FBtr0075896,FBtr0075895 1 2 2 118 3L 13013917 13014182 TACATTTCGGGCTTCTTCC 59 13013817 13013836 AATTGCGATATGAATGGTGC 59 NA Drosophila melanogaster 50 CG11658 FBgn0036196 FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127 3 5 5 186 3L 11694739 11694757 TAATGGTCTCAGTGAGGCT 59 11694509 11694589 GCTGTCATTTACATGCGAG 59 NA Drosophila melanogaster 50 CG6084 FBgn0086254 FBtr0076139 3 1 2 169 3L 11614456 11614474 ATTCGATACCAGGTTCAGC 59 11613757 11614323 CCGTATTGGTTGAGTAGGG 59 NA Drosophila melanogaster 50 Sgs3 FBgn0003373 FBtr0076096 2 1 1 126 3L 11505497 11505515 AACTACAACTACTTGTGCG 57 11505605 11505623 CTTAGATGTCGTGCATGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mnf FBgn0036134 FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228 1 5 5 98 3L 11109449 11109535 ACAATACACAGGATCTGTTCC 59 11109371 11109389 ATATGGCCTGAACGATGAG 59 NA Drosophila melanogaster 50 CG14154 FBgn0036093 FBtr0076257,FBtr0076258 1 2 2 65 3L 10635838 10635856 CCATTTCCAAGCAGATGGA 59 10635885 10635903 CACCATCGTATGAATCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CalpB FBgn0025866 FBtr0076343 3 1 1 62 3L 9883640 9883659 GCATGGATCTTATGAAGCAC 59 9883902 9883920 CCAGTAAAGTCCTCCATGG 59 NA DesignNoJunction Drosophila melanogaster 50 I-2 FBgn0028429 FBtr0112935,FBtr0076370 2 2 2 71 3L 9829169 9829187 ACTAAAGACTTCGCGTAGC 59 9829048 9829066 TTCAGCTCATCGAACTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Ilp4 FBgn0044049 FBtr0076372 3 1 1 64 3L 9796941 9796959 TTATCCGTAAGCTACAGCA 58 9796895 9796913 CTTTAACCTTCCCGTTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8329 FBgn0036022 FBtr0076387 1 1 1 60 3L 9631380 9631398 CTGCGAATGAACAATGGAG 59 9631422 9631440 TCAGGACCCAATTGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MTF-1 FBgn0040305 FBtr0113323,FBtr0113322,FBtr0076459 2 3 5 107 3L 9427511 9427529 CTCAGTCGCTATAGATGCA 58 9428957 9428976 GCATTTAAAGCTGTAGTCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32022 FBgn0052022 FBtr0076597 2 1 1 61 3L 8713836 8713854 AGCGTAAAGTATCAGAGGC 59 8713793 8713811 CATGAAGTTCTCCATTCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGEF4 FBgn0035761 FBtr0076886,FBtr0076885 1 2 2 146 3L 7314973 7315051 GCAAATGCGAATATGATACG 57 7314846 7314864 CCTTTCCCATTGGATTTCC 58 NA Drosophila melanogaster 50 CG32387 FBgn0052387 FBtr0076920,FBtr0110848 2 2 3 94 3L 7157941 7158035 CTACAGACACAAGCAAAGTC 58 7157866 7157884 GAATGGTGGCATAATACCG 58 NA Drosophila melanogaster 50 Cpr65Ea FBgn0035735 FBtr0076929 1 1 1 60 3L 7079518 7079537 TACCATCACCAAGTTCTTGG 59 7079477 7079496 CTCGATATCATAGGCGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dikar FBgn0052393 FBtr0076954,FBtr0076953 1 2 2 165 3L 6734820 6734841 GTTTAGTTCTGCCTTTGATCTG 59 6734614 6734632 TGTGATTTCCTTGGCTACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32394 FBgn0052394 FBtr0076955 1 1 1 221 3L 6730704 6730722 TCTACGTGAAGAACCATCG 59 6730378 6730463 CAGTGTATTCATTGTTGTGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG13297 FBgn0035685 FBtr0077020 1 1 1 61 3L 6149978 6149996 CTACACTCTTCCTGATGGA 57 6149935 6149953 CTGAAGTTCCACTCAGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr65Aw FBgn0052404 FBtr0077023 2 1 1 64 3L 6135437 6135455 TAATCCTGGTCAGCTTCTG 58 6135391 6135409 GTATCTCAGTATCTGGGCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 loj FBgn0061492 FBtr0077053,FBtr0077052,FBtr0077051 1 3 3 124 3L 6088573 6088752 TACGTGTCCTTTAGTGTGG 58 6088839 6088858 GATACCTGATCCGTGTAGTC 59 NA Drosophila melanogaster 50 CG10472 FBgn0035670 FBtr0077066 2 1 1 194 3L 6055555 6055573 ATTTCCCTGATCAAGTTGC 57 6054776 6054794 GTTGTTCATGATGGGAACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG12027 FBgn0035585 FBtr0073372 1 1 1 61 3L 5012006 5012027 CTACAAGGATCCCATTTATCAG 58 5011966 5011984 GACTCTTCAGCCGATACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Src64B FBgn0003501 FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321 3 5 5 178 3L 4596210 4596228 TAAATCCCGCGATGAATCC 59 4595932 4596069 TCTCAAAGAACCAGTCTTCG 59 NA Drosophila melanogaster 50 Src64B FBgn0003501 FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321 1 5 5 158 3L 4596191 4596209 GATCTGAGCTTCATGAAGG 57 4595933 4596069 CTCAAAGAACCAGTCTTCG 58 NA Drosophila melanogaster 50 dyl FBgn0066365 FBtr0073341,FBtr0073343,FBtr0073342 3 3 3 70 3L 4295826 4295844 CAGTACGATCCCTATGTGC 59 4295774 4295792 TAGAAATCGTACCAGGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr64Ac FBgn0035512 FBtr0073252 2 1 1 145 3L 4212506 4212524 CGGAGTAACCGATCATCAC 59 4212379 4212397 TGAATCCGTTGACCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 2 9 15 80 3L 3083796 3084813 TCGCCACTTATATGAATCGA 58 3084853 3084874 CCAAATTAAGTAGTGAGAACCC 58 NA Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996 3 6 15 82 3L 3083796 3085208 TCGCCACTTATATGGTCAC 59 3085252 3085272 ATATGGTGCATAGAAGTTGGG 59 NA Drosophila melanogaster 50 CG1244 FBgn0035357 FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933 3 6 6 91 3L 2640505 2640584 GTCTGTGGAAGGATGTACC 59 2640639 2640657 CACTTGTAGGACAGGTGAG 59 NA Drosophila melanogaster 50 CG16758 FBgn0035348 FBtr0072966,FBtr0072964,FBtr0072963,FBtr0072965 2 4 4 168 3L 2499617 2499702 AACCACGATGAGGTTATGG 59 2499467 2499485 CTTAGATGCGAGCTCAGAG 59 NA InUTR Drosophila melanogaster 50 CG32306 FBgn0052306 FBtr0072892,FBtr0072895 2 2 4 229 3L 2461254 2463060 TAGATGCGGAATTCGAACC 59 2463252 2463271 AATCGGAGAGTAATCCATGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5690 FBgn0035295 FBtr0072842 2 1 1 108 3L 1949145 1949166 CTGCAAGAATATCATCAGAAGC 59 1949233 1949315 TGAGATTGGTCTCAGTTTCAG 59 NA Drosophila melanogaster 50 n-syb FBgn0013342 FBtr0072819 1 1 5 167 3L 1636901 1636920 GCATAGAGTACCTTCATCCT 58 1635945 1635964 GTTCTTGTCTTTCTTTCCCA 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12003 FBgn0035234 FBtr0072744 1 1 1 60 3L 1566463 1566481 ATCATTGATCCCAGTCTGC 59 1566505 1566523 CAAAGTTGTCTCGGAAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Reg-2 FBgn0016715 FBtr0072561 1 1 1 143 3L 606251 606269 GATTATCCCAACTTTGGGC 58 605661 605679 CTCAATTAGGTGGTTGGAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG12313 FBgn0035124 FBtr0072507 2 1 1 60 3L 276324 276342 GTCTGGAAACGACAATGAC 58 276363 276384 TCCTAGAACACTAAGAAACGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pk61C FBgn0020386 FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466 1 8 8 86 3L 142804 142822 ATATCGCGACTGCTTAGTG 59 142872 142953 GTCGAAAGAGTTCTTTGCG 59 NA Drosophila melanogaster 50 Pk61C FBgn0020386 FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466 1 8 8 86 3L 142804 142822 ATATCGCGACTGCTTAGTG 59 142872 142953 GTCGAAAGAGTTCTTTGCG 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-176 FBgn0086659 FBtr0091917 2 1 1 62 2R 19727509 19727527 AAGGCAGAGTAAGGAATGG 58 19727465 19727483 CTCGCGGATTTATAACCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:229 FBgn0065073 FBtr0091664 3 1 1 111 2R 18961459 18961477 CAGAACATGGCATCATGTG 59 18961366 18961384 GCATTATTCTAAGCAGCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6a15Psi FBgn0033303 FBtr0088689 1 1 1 60 2R 4457403 4457424 GGAACTTCATTACTGATACCTG 58 4457445 4457463 GATGTGGATATAAGTGCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ETH FBgn0028738 FBtr0072426 3 1 1 60 2R 20682574 20682593 CTTGACAACAACGCTATTCC 59 20682533 20682551 GATCGAAATCCTTCCAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k09913 FBgn0021979 FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961 3 4 4 100 2R 18958339 18958357 TGAGATGGGATTCGATGTG 59 18958497 18958515 GGAATCGAATAGTCTCGGC 59 NA DesignNoJunction Drosophila melanogaster 50 fd59A FBgn0004896 FBtr0071898 2 1 1 74 2R 18756703 18756724 CATACTACAAGGACAAATTCCC 58 18756759 18756777 TTATGAAGCAGTCGTTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30265 FBgn0050265 FBtr0071891 3 1 1 94 2R 18720503 18720521 TTTGTACATCGGTCGACTG 59 18720578 18720658 GAGTCCAATCGTATTCTGGA 58 NA Drosophila melanogaster 50 CG30275 FBgn0050275 FBtr0071874 1 1 4 118 2R 18595918 18596191 GTACATTGTGGATAGGGCC 59 18596273 18596291 TCTGTCCCATTACCTCCTC 59 NA Drosophila melanogaster 50 CG4329 FBgn0034745 FBtr0071940 1 1 2 60 2R 18499375 18499393 GGAAACCGATCATCATGAC 58 18499284 18499303 GTCTCATAGTTCCAAATCCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG10344 FBgn0034729 FBtr0071840 1 1 2 169 2R 18313878 18313896 ATACATGTGGGTCATCCAC 59 18313669 18313687 TCTTTGCTCTCCTTAGTGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG30392 FBgn0050392 FBtr0071618 1 1 1 106 2R 17179225 17179243 AGAACCATGCTGGATTACG 59 17179077 17179155 TAGACAAAGTCAAGACCGC 59 NA Drosophila melanogaster 50 Xbp1 FBgn0021872 FBtr0071571 2 1 2 189 2R 17031809 17031828 ATACTACAGAACAAGTGCGA 58 17031980 17032051 CTGTTGTATACCAGCCCTC 59 NA Drosophila melanogaster 50 RpS18 FBgn0010411 FBtr0086273,FBtr0086274 3 2 2 240 2R 16151784 16151803 CCTGCGTATCATGAATACGA 59 16152066 16152084 ATCGATGATGTCCTTCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15128 FBgn0034467 FBtr0086481 1 1 1 108 2R 15574057 15574162 AAGAAGGTTCAGCAATTGG 58 15573967 15573985 ACACCTCGTTAAGGAACTC 58 NA Drosophila melanogaster 50 CG10916 FBgn0034312 FBtr0086749 1 1 1 60 2R 14061969 14061987 CTTTACCAGGGTATCCTGC 59 14062011 14062029 GGATGTACATGACCTTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pcl FBgn0003044 FBtr0086735 1 1 1 238 2R 14024861 14024879 CTGTCAGCCATAAGATCAC 57 14025140 14025213 AACAAAGAACATATCGCCG 58 NA DesignRelaxed Drosophila melanogaster 50 Mapmodulin FBgn0034282 FBtr0113091 2 1 3 133 2R 13755957 13755975 GATCTTCAAGATGTTGCCA 57 13755582 13755798 CATTGCACTTATCTCCCAC 58 NA Drosophila melanogaster 50 Rab4 FBgn0016701 FBtr0086830,FBtr0086831,FBtr0086829 1 3 3 82 2R 13461765 13461847 AGAGAACGAGCTTATCTTCC 58 13461892 13461910 TGGTCTTTGAGCACTTGAG 59 NA Drosophila melanogaster 50 RpL18A FBgn0010409 FBtr0086947 3 1 1 68 2R 13434113 13434131 ATTAAGGTGGACTCGATCC 58 13434063 13434081 CTTTGAATCGTGGAACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4847 FBgn0034229 FBtr0086937,FBtr0086934,FBtr0086933 3 3 5 199 2R 13400212 13400290 GACTTCTTGAGCCAATCTG 58 13400453 13400471 TTCAGACCGGTCAATTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 mbl FBgn0053197 FBtr0086994 3 1 4 131 2R 13249486 13249504 AATTCTCTGGCATGGTACC 59 13249598 13260596 GAGGGTGTCCAGTAAATGAG 59 NA Drosophila melanogaster 50 GstS1 FBgn0010226 FBtr0087005,FBtr0100258,FBtr0087006 3 3 3 121 2R 12981866 12981885 CATTCTACCTGGAGAAGCTC 59 12981677 12981697 GACCATGTAGTTCATGTAGTC 57 NA DesignNoJunction Drosophila melanogaster 50 veg FBgn0015562 FBtr0087051,FBtr0087052 2 2 2 60 2R 12843872 12843890 TGGATTAATCACCTTGGGA 57 12843914 12843932 GTTCTTGAGTAGCAGTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ef1beta FBgn0028737 FBtr0087041 1 1 1 90 2R 12756214 12756232 ATCTATTCGGATCCGACGA 59 12756286 12756304 TTCTTAGACTTCTTGGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dek FBgn0026533 FBtr0100437,FBtr0100438,FBtr0100436 1 3 4 119 2R 12747181 12747201 CCAATCTTGAGGAGATTACGA 59 12747282 12747364 TCGCAATTAACGCTTTCAC 59 NA Drosophila melanogaster 50 unc-104 FBgn0034155 FBtr0113089 2 1 4 155 2R 12648210 12648919 ATGCGAATAAGGATGAGCT 58 12647993 12648011 TAAGTTTCTCCTCCCAGGT 59 NA Drosophila melanogaster 50 DAT FBgn0034136 FBtr0087125 1 1 1 80 2R 12448479 12448561 CAAATTGTAGACCGTTTGAGAG 59 12448420 12448438 TTCCCATGGCATACAAGTC 59 NA Drosophila melanogaster 50 Menl-2 FBgn0029153 FBtr0100603,FBtr0100601,FBtr0100602 1 3 3 247 2R 12303329 12303347 GTACTTGTTGGAGCAACTG 58 12303033 12303051 AAAGTCAGACAGTTGTTGG 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG7747 FBgn0034109 FBtr0087179 2 1 1 94 2R 12180219 12180297 GCTCTCAGTTCTTTATCACCT 59 12180145 12180165 TTGAAGAGTGTCTAATCCTCC 58 NA Drosophila melanogaster 50 mrj FBgn0034091 FBtr0087193,FBtr0087196,FBtr0087194,FBtr0087195 1 4 5 149 2R 12093318 12093418 AAGTGAAGAAGGCATATCGA 58 12092510 12092528 ACTCATCGTATATGCGACG 59 NA Drosophila melanogaster 50 CG33462 FBgn0053462 FBtr0087284 2 1 1 94 2R 11584621 11584715 CTTGCTAATAACCGTTCGC 59 11584773 11584791 CATTGTACTCCTGGAAGGG 59 NA Drosophila melanogaster 50 CG30081 FBgn0050081 FBtr0087365 3 1 1 60 2R 11095728 11095748 CCAACCTGAACATATAAGACC 58 11095767 11095788 AGCTATGCCATTGTATCTAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10249 FBgn0027596 FBtr0087429,FBtr0112929 2 2 4 123 2R 10793453 10797741 TTTGATGTGGCAGATTCCT 59 10793348 10793366 TTTCATATTGGACCTCCGC 59 NA Drosophila melanogaster 50 CG10209 FBgn0033971 FBtr0087462 2 1 1 129 2R 10735327 10735346 AGAAGACGATTATTCAGTGG 57 10735166 10735184 TCCTGGTTTAGTTCGATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34444 FBgn0085473 FBtr0112748 1 1 1 93 2R 10257485 10257565 GTTCGAATTGCATGGATTAGG 59 10257620 10257638 CACACCATTGAGATCTCCC 59 NA Drosophila melanogaster 50 CG8493 FBgn0033716 FBtr0087903,FBtr0087902 1 2 2 60 2R 8226604 8226622 GTGGCATCCATGTTATCTG 58 8226646 8226664 ACCTCGTATCTGTTTAGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SIP2 FBgn0061197 FBtr0089670,FBtr0089669 1 2 4 178 2R 8191471 8191489 AAGGAAGTGTCCAAGATGC 59 8191253 8191330 CTCAGCTTGTTGTTTACCTG 59 NA Drosophila melanogaster 50 Oda FBgn0014184 FBtr0088015,FBtr0088013,FBtr0088014 1 3 3 283 2R 8055513 8055531 GAACAGATCACGATAGGGC 59 8055182 8055203 CAGAATCGTATTCCAATTGGTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG34232 FBgn0085261 FBtr0112426,FBtr0112425 2 2 2 80 2R 8052971 8052989 TTTGCCACTATCTTGGTGG 59 8052909 8052927 CTTGTGGTTCAGATGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9027 FBgn0033631 FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897 3 4 4 193 2R 7269622 7269641 AATCGGATAATACCCAGGTC 58 7269385 7269466 ACCGTGATCAACCTTATCG 59 NA Drosophila melanogaster 50 cag FBgn0017414 FBtr0088239 3 1 1 60 2R 6780923 6780941 ACCCATCTCGAATAAGGAC 58 6780881 6780901 GATAGGCTCTATCAGAGTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mat1 FBgn0024956 FBtr0088255 1 1 1 60 2R 6626857 6626876 AGACAAACAAGCGTATTGAG 58 6626816 6626834 TTATTCCGCTGAATGACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0089365 1 1 26 186 2R 6419759 6419777 TGAGGATTTGACACTGGAC 59 6375918 6419548 ATCCACGGTAATCACTTGG 59 NA Drosophila melanogaster 50 micr FBgn0033522 FBtr0088262,FBtr0088263 2 2 3 125 2R 6322086 6322165 GAGGAAATGGATGTTTCCC 58 6322252 6322272 CTCTTCAGTCATTAGGTTCTC 57 NA Drosophila melanogaster 50 CG12900 FBgn0033515 FBtr0088323 1 1 1 60 2R 6266266 6266286 GAGATCATACTTGGAACTCTG 57 6266226 6266244 GGATCTTCTTACGTCTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hr46 FBgn0000448 FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367 2 4 4 111 2R 6095624 6095704 CAATTTCCGCGATATTTCC 57 6095531 6095549 CGAATCTATCGAGAACAGC 57 NA Drosophila melanogaster 50 gem FBgn0050011 FBtr0089758,FBtr0089759 1 2 2 95 2R 6023164 6023252 ACATGGACGATTATAGCCAG 59 6023310 6023328 TTGAAAGATAGGCCGTGAG 59 NA Drosophila melanogaster 50 sut4 FBgn0028560 FBtr0089675,FBtr0089674 2 2 2 60 2R 5973577 5973595 GCCACTATCATTTCGATCC 58 5973535 5973555 ACACCAATAGGAGTATCTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 3 9 9 68 2R 5738998 5739016 CTTTGAGTTGAATGGCCAG 59 5738880 5738966 ACATGGATCTCCTTAACGG 58 NA DesignRelaxed Drosophila melanogaster 50 sec31 FBgn0033339 FBtr0088642 1 1 2 114 2R 4783045 4783063 AAAGACGACATCGATAGCA 58 4783141 4783468 TATCTTGCGTATGGGTCAG 58 NA Drosophila melanogaster 50 CG14756 FBgn0033275 FBtr0088804 1 1 1 82 2R 4092805 4092823 GGAGTCCATCGATGAACTG 59 4092741 4092759 GTGAGAGGTCGATTTCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lig FBgn0020279 FBtr0100575,FBtr0088775,FBtr0088776,FBtr0088774 3 4 4 81 2R 3961935 3961953 TGCCATACTATCAGCAACC 59 3961997 3962988 TAATATCCCTGCACATGTGG 59 NA Drosophila melanogaster 50 lin19 FBgn0015509 FBtr0088845,FBtr0088847,FBtr0088848,FBtr0088846 3 4 4 94 2R 3806336 3806415 TGCGAAGAGGTTCTTATCG 59 3806473 3806491 ATCCGTTTCAGATCATCGT 58 NA Drosophila melanogaster 50 mus205 FBgn0002891 FBtr0088831 1 1 1 127 2R 3683669 3683746 AAAGAACGATTGTACTCCAG 57 3683836 3683854 CCTCTGTTTCGAACATGTC 58 NA Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012 1 7 7 84 2R 3287432 3287450 GATCTACGACAAGGAGACG 59 3287308 3287384 GGTGACTTCATTCCTGGTC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111056 2 1 60 81 2R 3226196 3226215 GGCAAATATAGTTGTCGAGC 59 3219874 3226152 ATCTGGGAGGTACATTCAC 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111067 3 1 60 169 2R 3251527 3251545 CAAAGCTATGAATCGGAGG 57 3249363 3251394 TACTTTCCATCCGTCTCTG 58 NA Drosophila melanogaster 50 CG17266 FBgn0033089 FBtr0086144 3 1 1 92 2R 2563161 2563180 CAAATACAGTCCCAACTGAG 58 2563022 2563040 TTCGAATATCATTCGTCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bin3 FBgn0033073 FBtr0085993,FBtr0085992 2 2 2 81 2R 2126343 2126361 GGTAGGATTCAGTCACAGC 59 2126405 2126496 TGCATACAACTGTATGGGTC 59 NA Drosophila melanogaster 50 CG8335 FBgn0033069 FBtr0085990 3 1 1 60 2R 2088677 2088695 GCATTGATCTGGATATGGC 58 2088717 2088737 GGATAGGCGAACATATTTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ap FBgn0000099 FBtr0086058 2 1 2 115 2R 1604289 1604800 GACGTCAGATACAGGATCG 59 1604192 1604210 TGAGTAGCATGAGGATTCC 58 NA Drosophila melanogaster 50 CG10396 FBgn0033020 FBtr0086089 3 1 1 60 2R 1241694 1241712 GTGGAGGAGATGGTATTCG 59 1241736 1241754 TTGATTCCATGACCAACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-525f FBgn0083033 FBtr0113548 3 1 1 67 2L 20419803 20419821 ATAAACCTGCCTGTGTCTC 59 20419851 20419870 TTAATTACTCAGGATGCCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1832 FBgn0032979 FBtr0085964,FBtr0100407 3 2 2 130 2L 22168220 22168238 GATACAATTACGCCCTGGT 59 22168055 22168126 GGATATGGTGTTAGCTGCA 59 NA Drosophila melanogaster 50 CG6448 FBgn0032976 FBtr0085939,FBtr0113045,FBtr0085938 1 3 5 212 2L 22156803 22158518 GTCCAAATTCAAGGTGCTG 59 22158694 22158712 TGCCGATACGATTTATTCC 57 NA DesignRelaxed Drosophila melanogaster 50 CG31619 FBgn0051619 FBtr0110959,FBtr0085901,FBtr0085902 1 3 3 110 2L 21713301 21716335 GATCCCACCTACATCAAGG 59 21716408 21716427 CGTTCGAGAGTATTCAAGGA 59 NA Drosophila melanogaster 50 His2B:CG33872 FBgn0053872 FBtr0091876 1 1 1 61 2L 21528097 21528115 AAGAACATCACCAAGACCG 59 21528054 21528072 TAGATGGCATAGCTCTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 nrv3 FBgn0032946 FBtr0081520,FBtr0081518,FBtr0081521,FBtr0081519 1 4 4 88 2L 21385322 21385341 ACATTAGTTTGGTACGAGTC 57 21385391 21388515 AGATCTTGGTACGATTTCAG 57 NA Drosophila melanogaster 50 E2f2 FBgn0024371 FBtr0081501 1 1 1 80 2L 21155158 21155178 GACATCTTTGGAGATGATTCC 58 21154977 21155116 CAGCTCGTAATGATTACGC 58 NA Drosophila melanogaster 50 CG18810 FBgn0042133 FBtr0081386 2 1 1 60 2L 20649228 20649248 GATGTCCAACTATGTCATGTG 58 20649270 20649288 CTTCATAAGCTTGGGATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10492 FBgn0032748 FBtr0113043,FBtr0081148 1 2 2 166 2L 19055919 19055937 TATTAACGTTCCACTGCAG 57 19056067 19056264 CTTCGTTGACACTATCGTG 58 NA Drosophila melanogaster 50 CadN FBgn0015609 FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017 1 6 12 101 2L 17651479 17652674 TCTGATACTACTCGTCTTGGT 59 17651398 17651416 TTGATGATATTCTCGCGCA 59 NA Drosophila melanogaster 50 CG6860 FBgn0032633 FBtr0080969 1 1 2 84 2L 17370896 17370916 CGATATTAAAGCACGATTCCC 59 17368378 17370852 CAAATTAGATTCAGCCAGAGG 58 NA Drosophila melanogaster 50 Tpr2 FBgn0032586 FBtr0080867,FBtr0080866 3 2 2 94 2L 16505937 16506015 CGCCTGTTTGAAATATCGTC 59 16506072 16506090 GTTTCATTACACTGACCGC 59 NA Drosophila melanogaster 50 CG4580 FBgn0032585 FBtr0080865 1 1 1 60 2L 16489197 16489216 ACATGCTCTATAAGGAACGA 58 16489239 16489257 ATTTCCAGGATATTGGCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL4 FBgn0001995 FBtr0080843 2 1 1 60 2L 16328245 16328263 ATTCTATGCTGAAGCACGA 59 16328203 16328221 TGCTCCAGATGTTTCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dyn-p25 FBgn0040228 FBtr0080693,FBtr0080694 2 2 2 101 2L 15006135 15006153 CAATTCAGCAAGGGAATCG 59 15006218 15006236 CACATAGGATCCAATGGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32970 FBgn0052970 FBtr0114461,FBtr0080622 2 2 2 80 2L 14309125 14309143 GCAACACTTTATACCGCTG 59 14309420 14309438 TTAGGCTGGCTTTCTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 smi35A FBgn0016930 FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289 1 5 5 80 2L 14189225 14195743 GAGCTAATGAGCTTGAACCT 59 14189164 14189182 GAAGCGTCGTATGAGACTC 59 NA Drosophila melanogaster 50 smi35A FBgn0016930 FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289 1 5 5 80 2L 14189225 14195743 GAGCTAATGAGCTTGAACCT 59 14189164 14189182 GAAGCGTCGTATGAGACTC 59 NA Drosophila melanogaster 50 CG16956 FBgn0032523 FBtr0080520 1 1 1 60 2L 13413910 13413928 TACCACCAAGTAAGGACCA 59 13413868 13413888 GGCTCCCTTATGAAATAAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vm34Ca FBgn0003983 FBtr0080521 2 1 1 184 2L 13411507 13411526 TAAGGAGGATAAGATGCTCG 58 13411342 13411360 TGAACAGGTAGTTCTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sir2 FBgn0024291 FBtr0080434 1 1 1 60 2L 13168582 13168603 CAGACCCAAATAGAAAGATCTG 58 13168624 13168642 TTTACACTGCTGCTAACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SC35 FBgn0040286 FBtr0089899,FBtr0089898 1 2 2 80 2L 12432196 12432318 GGAGTGCGAGATATGACTC 59 12432134 12432152 TACAGCATGACACAGATGG 59 NA InUTR Drosophila melanogaster 50 Patsas FBgn0029137 FBtr0080363,FBtr0080362 1 2 2 60 2L 12101695 12101713 TACTTTGACCACCACTGTC 59 12101653 12101671 ACCACATTCTGTTCCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6686 FBgn0032388 FBtr0089572,FBtr0089573 3 2 2 62 2L 11985837 11985856 TTACAGTGCAGAAGAGTTGG 59 11985733 11985751 TGCCGAAGTTTCTTAACCT 59 NA DesignNoJunction Drosophila melanogaster 50 crol FBgn0020309 FBtr0080260,FBtr0080263,FBtr0080261 3 3 4 152 2L 11797737 11797843 TGAAACCGATCATAATTCCC 57 11797604 11797622 CCGCATTATGTGAGATGAG 58 NA Drosophila melanogaster 50 CG31705 FBgn0028490 FBtr0080244,FBtr0080243,FBtr0080242 2 3 3 77 2L 11524601 11524620 AGCTGTTTACTATCCACAGG 59 11524475 11524493 AATGCTCCAGCGATAAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)06225 FBgn0010612 FBtr0110872,FBtr0110873 2 2 3 274 2L 10976255 10976273 CAAGGGATCAGGACTTGTG 59 10975910 10975928 TGTAGCCTACAATGTGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31715 FBgn0051715 FBtr0079996 1 1 1 180 2L 10341918 10342156 GGAGCAGACATAAATAGAAAGG 58 10342349 10342370 CAAGGAGTTTCTTAATCTCGTC 58 NA Drosophila melanogaster 50 CG4995 FBgn0032219 FBtr0079989,FBtr0079991,FBtr0079990 2 3 3 60 2L 10324288 10324309 ACCATTCTAAGGGATATTCCAG 59 10324399 10324417 GCATAAGGTACTCGAAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 nAcRalpha-30D FBgn0032151 FBtr0079913 3 1 6 98 2L 9825639 9825657 CTGGAGGTTAAGTTCGGAC 59 9819323 9825309 CTTCTCGTCCAAATTTAACCAC 59 NA Drosophila melanogaster 50 nAcRalpha-30D FBgn0032151 FBtr0079912,FBtr0079915 3 2 6 95 2L 9825635 9825653 AGGTTAAGTTCGGACTGAC 58 9815903 9825307 CGTTCCACTCCAAATTTAACC 59 NA Drosophila melanogaster 50 Nckx30C FBgn0028704 FBtr0079926,FBtr0079928,FBtr0079927 2 3 3 120 2L 9733529 9742390 CAACGTGGTATCAATGACAC 59 9733428 9733446 CAATGATGTGCAGGATGAC 58 NA Drosophila melanogaster 50 CG9298 FBgn0032060 FBtr0079730 2 1 1 60 2L 8686354 8686372 GGTGGCCTTATATTCAACC 57 8686396 8686414 TAAAGGTCTTCTCGTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17834 FBgn0028394 FBtr0079686,FBtr0079689,FBtr0079687,FBtr0079688 2 4 4 72 2L 8536208 8536227 TGCTGGGAAGATTTCTACTG 59 8536262 8536905 GATTGTAGTTGGCGATGGA 59 NA DesignRelaxed Drosophila melanogaster 50 D12 FBgn0027490 FBtr0079707 2 1 1 60 2L 8434924 8434943 GGAAAGGAACACTACTGGAG 59 8434883 8434901 TATAACCATGAACCCTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acp29AB FBgn0015583 FBtr0079716 1 1 1 60 2L 8392750 8392768 CATCCAGGATGAGATGGAG 58 8392708 8392726 CCAGTAGCTATTGTTGGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS13 FBgn0010265 FBtr0100541,FBtr0079724 2 2 2 260 2L 8364231 8364249 AGATGATGTCAAGGAGCAG 59 8363927 8363945 AGAATCAGACGGAACTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Btk29A FBgn0003502 FBtr0079616,FBtr0112836,FBtr0079617 2 3 6 142 2L 8298083 8298102 CTTTCAGCTACTTCGATGTG 58 8284050 8284128 TTGGAACGGATAACCATCC 59 NA Drosophila melanogaster 50 CG8455 FBgn0031997 FBtr0079588,FBtr0079587 3 2 2 89 2L 8200026 8200113 TTATGCTGGCCACTATAACC 59 8200162 8200183 CACTCAGATAGCTATTGAAGAC 58 NA DesignRelaxed Drosophila melanogaster 50 poe FBgn0011230 FBtr0079545 1 1 1 80 2L 8056362 8056380 CTTATTCGTGTCCTAGCCG 59 8056245 8056319 CAAAGTGTCCTTGAAATGCT 58 NA Drosophila melanogaster 50 Pvf3 FBgn0085407 FBtr0112611 2 1 3 81 2L 7155493 7155513 CCTCTCATAAGGAACATTGAG 57 7107536 7118888 AAATGTTCTCCACATCATGG 58 NA Drosophila melanogaster 50 Rab30 FBgn0031882 FBtr0079426,FBtr0079428,FBtr0079427 3 3 3 60 2L 7032003 7032021 CAGGGTCTATTTCCACCTG 59 7031961 7031982 CGGTCTTAATCATGAAATCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11321 FBgn0031857 FBtr0079386 3 1 2 85 2L 6767316 6767334 ACCATCGAAATCCACACTG 59 6767032 6767267 GAGCATTAGCTTTGTGCAG 59 NA Drosophila melanogaster 50 CG9505 FBgn0031805 FBtr0079253 2 1 1 60 2L 6369130 6369148 GGGAAGGAACTGTATTCGT 58 6369172 6369190 GTAGACGTAGTTCATCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9135 FBgn0031769 FBtr0079186,FBtr0079185 1 2 2 128 2L 6052015 6052092 AAGAGAAGTACCGATATGTGG 59 6052182 6052200 ACTTGATGTCTTGGCTGAG 59 NA Drosophila melanogaster 50 CG13992 FBgn0031756 FBtr0079237 2 1 1 60 2L 5967363 5967381 GATCTACTGAATCGCAGCA 59 5967321 5967339 TACTTGGCCTAATCTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tim FBgn0014396 FBtr0114526,FBtr0077564,FBtr0077567,FBtr0114527,FBtr0077566 1 5 8 80 2L 3500053 3500071 CAGAATTCCGGACTACTGG 59 3499754 3500009 TTGAGGTTGAGTTTGTCCA 58 NA Drosophila melanogaster 50 pgant4 FBgn0051956 FBtr0114524,FBtr0077523 3 2 2 60 2L 3473690 3473773 GTCAACTACAATTGGCTGC 59 3473795 3473815 TGGAGATCTTGGGATTAATGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG2991 FBgn0031474 FBtr0077627,FBtr0077625,FBtr0077626 3 3 3 121 2L 2866633 2866651 CCTCACAATTGCATCAGTC 58 2866736 2866826 GTTAACTGGAACCTTGGTC 57 NA DesignRelaxed Drosophila melanogaster 50 aph-1 FBgn0031458 FBtr0077716 1 1 1 60 2L 2766967 2766985 CAATGAGCTTTACACGACC 58 2767009 2767027 GACTCCCGTAAGTATGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31689 FBgn0031449 FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706 1 4 4 81 2L 2738712 2738730 GAGACCTTCAACAACTGGT 59 2738773 2738878 AGAAGATGATATGGACTGGTG 58 NA Drosophila melanogaster 50 CG17301 FBgn0031442 FBtr0077697 2 1 1 60 2L 2653315 2653333 GACTACTGCATGATGTCGA 59 2653356 2653375 TGAAATCCGAGAACTTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 insv FBgn0031434 FBtr0077746 3 1 1 60 2L 2576010 2576028 TTAGCAACGGCATAAAGAG 57 2575968 2575987 ATGAACTGTAGTGGAGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9886 FBgn0031428 FBtr0077770 2 1 1 69 2L 2422324 2422342 TTTACAAGAATCTCGCGCA 59 2422374 2422393 AGATCCATCACATTGGTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4272 FBgn0028485 FBtr0077763,FBtr0077762 2 2 2 60 2L 2368169 2368189 TCGTACGGAGAACTATATCAG 58 2368209 2368331 CCGTATAGGAAGTGATCTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG4271 FBgn0031409 FBtr0077756 3 1 1 60 2L 2285202 2285220 TCTTATTTGCACGAAGCTC 58 2285243 2285262 CAGAAGTCAAACTTTGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34049 FBgn0054049 FBtr0100104 1 1 1 60 2L 2264640 2264659 CGAGAATATTATGCGTGTCC 58 2264599 2264620 CCAGAGTTTCAGTATTTGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eno FBgn0000579 FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905 1 4 5 83 2L 1727657 1727675 TAAATTTGTGCAGATCCGC 58 1726602 1726620 GAGTCGTAGATTTGACGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5565 FBgn0031335 FBtr0077944 1 1 1 60 2L 1355744 1355762 ACCAAGAAGTGTTACTGCC 59 1355702 1355720 CTATCAAGGTTCCATCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdlc2 FBgn0026141 FBtr0077925,FBtr0077924 3 2 2 62 2L 1344750 1344769 GTTCGACAAGAAGTACAACC 58 1344794 1344812 ACATAGGATCCGAAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpp30 FBgn0022246 FBtr0078143 1 1 1 112 2L 252058 252076 ATAAGATCGAGCATCTGCG 59 251910 251983 ATTATGGGAGACACTCATCG 58 NA Drosophila melanogaster 50 CG11377 FBgn0031217 FBtr0078104 3 1 1 116 2L 103426 103526 AGTGTCATGATATTTCTGCG 58 103603 103623 CAATATGAGTAGAGCTCTGGA 58 NA Drosophila melanogaster 50 CG7889 FBgn0031003 FBtr0074675 1 1 1 247 X 19138595 19138613 ACTATTTGTACTCCCGACG 58 19138885 19138903 AGTGGGTGTTTGTTTACGT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG9981 FBgn0030746 FBtr0074304 1 1 1 80 X 16297169 16297188 TAAAGGAGGGATTGGAAGAC 58 16297037 16297128 CGTTCCTTATGACAGTTACTC 58 NA Drosophila melanogaster 50 CG15029 FBgn0030619 FBtr0073998 1 1 1 77 X 15079177 15079195 TCTGATTGTTGTCACCGAG 59 15080350 15080368 CCATCCTTGTCTGTATGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG12398 FBgn0030596 FBtr0073976 3 1 1 105 X 14807144 14807216 ATATAGATTTCCTTCGCCAC 57 14807058 14807076 GAATCCTGTCTGAGATCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9512 FBgn0030593 FBtr0073979 2 1 1 111 X 14798009 14798027 ATTGGTTCACCTCAGATCC 58 14796896 14796914 GATCCTTGAGGTTCTCACC 59 NA DesignNoJunction Drosophila melanogaster 50 mud FBgn0002873 FBtr0073907,FBtr0073905,FBtr0073906 1 3 3 81 X 14142425 14142580 CCTAGCACATAACTATCCCG 59 14142623 14142642 GTAAACGTAAAGGCAATCCA 58 NA Drosophila melanogaster 50 CG10990 FBgn0030520 FBtr0112981,FBtr0073840 2 2 2 166 X 13644649 13644667 CAAGCAGCTAGATCTCACC 59 13644371 13644389 TCTTGTCGGTTAGGAATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG12721 FBgn0030373 FBtr0073637 3 1 1 80 X 11966601 11966619 CAATCTAGATGGATGGCGA 58 11966539 11966557 TTTCTTACGCTTCTTTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1745 FBgn0030301 FBtr0073500,FBtr0073499 3 2 2 83 X 11349152 11349171 ACTATTAATCCGGTGGACAC 59 11349217 11349325 CTCCAGGAGGTCATTTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12796 FBgn0029909 FBtr0070973 1 1 1 75 X 6726261 6726279 TGACTCTGATCTCGATTGC 59 6726134 6726226 CGGGTCATGTATCTTCTATAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6067 FBgn0029828 FBtr0070864 1 1 1 271 X 5849896 5851092 AAATGCAAACGACCTACAC 58 5851396 5851414 TGACGGATGGTAGTATGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Parg FBgn0023216 FBtr0070585 1 1 1 60 X 3564620 3564707 CCAGACATCAACTTTAACAGG 58 3564580 3564598 TAAGCTTCTCCAGAACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2694 FBgn0024991 FBtr0070482,FBtr0070483,FBtr0070481 2 3 3 194 X 2609466 2609565 TCTTACCAGAATCTGAACGA 58 2609720 2609740 GAAATCTTCTCCCTCATACTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG2652 FBgn0025838 FBtr0070505 1 1 1 63 X 2576417 2576435 TATTTGCGAGGAGATGCTC 59 2576372 2576390 ATTCTGTCTCATCATGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED18 FBgn0026873 FBtr0114454,FBtr0070308 1 2 2 113 X 1760521 1760607 AGCAAAGGGCTATATGTTCC 59 1760683 1760701 TAGCTTTGTGAGATTGGCT 58 NA Drosophila melanogaster 50 CG32809 FBgn0023531 FBtr0089815,FBtr0089814 3 2 2 83 X 1579765 1584245 CCACAAATCAAAGATTGGC 57 1579700 1579718 TCTGAAGAGTACATGCCTC 58 NA Drosophila melanogaster 50 eIF4E-7 FBgn0040368 FBtr0070252 3 1 1 60 X 1052915 1052933 CAACATATACGTGCTGGAG 57 1052873 1052892 AGTTGATCCCAGTTTATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40313 FBgn0058313 FBtr0113862,FBtr0113861 2 2 2 71 U 1924376 1924528 ACAATGAAACCAACGAAGAG 58 1924324 1924342 CTATCCATACTTCGGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40203 FBgn0058203 FBtr0113833 1 1 1 167 U 448296 452482 CAGCAAACTTGTGATGGTG 59 452613 452631 AACTCGATCTTAGTGCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF4G FBgn0023213 FBtr0089243,FBtr0112904 2 2 2 85 4 941816 945718 CCTATCACTGATGAAACGGA 59 941750 941768 GGATGGGTCTGATTAGGTG 59 NA Drosophila melanogaster 50 Or98P FBgn0067407 FBtr0085225 3 1 1 65 3R 23670943 23671077 TATATCGTGGCTAAGCTGG 58 23671104 23671124 CAATCGCTCAGAAATGTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PH4alphaSG2 FBgn0039779 FBtr0085653 2 1 2 129 3R 26316146 26316166 TAAAGCTGGATGACTATCTCG 59 26316257 26316330 AATGCACGGAACTCTTCTC 59 NA Drosophila melanogaster 50 CG31030 FBgn0051030 FBtr0110834,FBtr0085579 2 2 2 60 3R 25991690 25991765 AACATTGAAGTGGTGAGTC 57 25991648 25991666 CCAACAGAATCTCAGAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15517 FBgn0039718 FBtr0085515 2 1 1 80 3R 25729268 25729347 AAATAGTACCGTCTGCCTC 58 25729206 25729225 GAATTTCCATCCATTGTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11878 FBgn0039310 FBtr0084821 2 1 1 66 3R 21100570 21100588 AATATGCTGGTCGGATACC 58 21100618 21100692 GCATAGAATCCTCTCGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31108 FBgn0051108 FBtr0084802 3 1 1 95 3R 20941041 20941060 TAATTTACTCTGGACGGGTG 59 20940903 20940983 ATTTCGTAGGACCTAGGGA 58 NA Drosophila melanogaster 50 CG5871 FBgn0038870 FBtr0084050 3 1 1 92 3R 17046820 17046906 GATGTGCATAGTATGCATGTG 59 17046960 17046978 AGTCCTATCAGACTGAGCT 58 NA Drosophila melanogaster 50 CG4465 FBgn0038750 FBtr0083851 1 1 1 60 3R 15742696 15742770 TATTTGGTGACATAACAGCG 58 15742655 15742674 AAGCAGTCGTAAAGTATGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31088 FBgn0051088 FBtr0083241 2 1 1 84 3R 11776252 11776348 TTCAACAGCTTAGCTTATGC 58 11776134 11776152 CAGTCAAGCGATTTGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31183 FBgn0051183 FBtr0083187 2 1 1 99 3R 11688528 11688713 CGATAATTCACTTCCTGGGT 59 11688448 11688466 GATGTAGTGACGATAGCCG 59 NA Drosophila melanogaster 50 Su(var)3-9 FBgn0003600 FBtr0083129 3 1 3 299 3R 11087619 11088286 ACATCACAATCAAGCTGGA 59 11087338 11087356 TGTCCACATCATGTTCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 aur FBgn0000147 FBtr0082483 1 1 1 249 3R 7789482 7789562 AACCAAGACTGAAACCCAG 59 7789775 7789793 ATACAGACGCAGGATATGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9839 FBgn0037633 FBtr0081934 3 1 1 99 3R 4630978 4630996 GGAATTGGAACAGCAAGAG 58 4630832 4630916 GTAGTCATCCATATCGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1427 FBgn0037347 FBtr0078702,FBtr0078703 1 2 2 82 3R 1427574 1427643 TATAGCCTGCAAACTCGTG 59 1427687 1427707 GTTGTGCCTCTAGTAAGTCTC 59 NA Drosophila melanogaster 50 AcCoAS FBgn0012034 FBtr0078413,FBtr0100592,FBtr0078414 1 3 3 83 3L 21265831 21265849 TCTAAAGCACAACCTGAGC 59 21265711 21265729 TTGTAATACCAGAGCCAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11451 FBgn0037025 FBtr0078255 3 1 1 92 3L 20799466 20799545 GCTAACAAGAGAAGCAAATCG 59 20799598 20799617 AAAGTGATCTTCTCGAGACG 59 NA Drosophila melanogaster 50 CG7372 FBgn0036522 FBtr0075570 1 1 1 120 3L 15614596 15614614 CAGTTGGACAAGAGTGAGG 59 15614698 15614774 TTGAATTGGTGGGTTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14110 FBgn0036352 FBtr0075844 1 1 1 105 3L 13377974 13378045 GTTGTTCTCACCATTCAAGC 59 13378113 13378131 GCTCTTCATCTTTACGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32112 FBgn0052112 FBtr0075917,FBtr0075915,FBtr0075916 1 3 3 80 3L 12737069 12737147 TTTACAACTGGTGTCATGAG 57 12737190 12737208 TTCTCTGTACTGTCCATCC 57 NA Drosophila melanogaster 50 CG17153 FBgn0036248 FBtr0075992 2 1 1 271 3L 12111719 12111799 AACTAGACGATTCGTTGGAG 59 12112093 12112111 GGATTTGTGTCCAGTTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 tna FBgn0026160 FBtr0076267,FBtr0112923,FBtr0076268 2 3 3 119 3L 10865268 10865287 AAACTATCAGCACAGTCCAG 59 10865369 10865454 ATTTCTTCGCTGTTGTCCA 59 NA Drosophila melanogaster 50 exo70 FBgn0035892 FBtr0076612 1 1 1 85 3L 8408752 8408828 CTACGAAATTTACTCTGGAGTG 58 8408874 8408892 TCAGCATAGCGTTGATCTC 59 NA Drosophila melanogaster 50 CG10144 FBgn0035704 FBtr0076986 1 1 1 123 3L 6486753 6486830 AGAGAATAAGCTTCCTGGT 57 6486648 6486666 ATGATGATACGCTCCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Ero1L FBgn0028736 FBtr0073216,FBtr0073217 1 2 2 139 3L 4173146 4173167 AAGATTCTCTACTCAGAGAAGC 59 4173267 4173346 TTGGATAGTCTGCCAAACG 59 NA Drosophila melanogaster 50 CG2469 FBgn0035205 FBtr0072668,FBtr0072669 3 2 2 73 3L 1307848 1307866 GTTGAGCATTCTCAAGCAG 59 1307902 1307982 TTTGTTTGTAGTAGGCAAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG2469 FBgn0035205 FBtr0072668,FBtr0072669 1 2 2 72 3L 1307848 1307866 GTTGAGCATTCTCAAGCAG 59 1307902 1307981 TTGTTTGTAGTAGGCAAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG13912 FBgn0035186 FBtr0072625 2 1 1 138 3L 1189810 1189895 GTCACATACTGTGAGGGTC 59 1189996 1190015 GTACCTGTGATCGTATTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33376 FBgn0053376 FBtr0086368 1 1 1 62 2R 15645224 15645242 AATACATCGGTTCTCGTCC 59 15645180 15645198 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33378 FBgn0053378 FBtr0086370 1 1 1 62 2R 15644479 15644497 AATACATCGGTTCTCGTCC 59 15644435 15644453 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2811 FBgn0035082 FBtr0072412 3 1 1 73 2R 20827639 20827658 TACTAGAAGACTACCCGGAC 59 20827527 20827606 CTGAATGGTTTCATTCTGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ETH FBgn0028738 FBtr0072426 3 1 1 124 2R 20682883 20682904 AGGATTCTTCCTAAAGATCACC 59 20682722 20682798 GAGGAGTAACAGAGCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pof FBgn0035047 FBtr0072327,FBtr0072328 1 2 2 157 2R 20558156 20558174 AACTGCTCAGATTCCAGTG 59 20558292 20558374 GTATCTTCTAAGCTGTTCTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 nvy FBgn0005636 FBtr0072267 1 1 1 209 2R 20177065 20177083 TTCTTCATGGAGATGAGCC 59 20177314 20177460 AACCTGATGGTGACTATCC 58 NA DesignNoJunction Drosophila melanogaster 50 Rrp4 FBgn0034879 FBtr0072111 2 1 1 82 2R 19443487 19443505 GAGAACATCAAGTCCTCGG 59 19443423 19443441 ACATAGCGACTCTTAAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr59c FBgn0041235 FBtr0071977 1 1 1 60 2R 18990145 18990226 CAGCCTTTGAGAACTTCCA 59 18990103 18990123 CCCATAACGTAGAATTCATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30275 FBgn0050275 FBtr0071874,FBtr0071873,FBtr0071875,FBtr0071876 3 4 4 107 2R 18599193 18599211 GATCCAGATGTCTATGCAG 57 18599282 18599362 ATGATGTAAGATCTTGCGG 57 NA Drosophila melanogaster 50 EfSec FBgn0034627 FBtr0071608 3 1 1 80 2R 17273457 17273475 TACCTCAAGGAGAACAGCT 59 17273338 17273414 CACCTCCTATAATAGTGCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rx FBgn0020617 FBtr0071518 1 1 1 74 2R 16811023 16811041 ATCTCAACCAGACCAACAG 59 16811079 16811271 TGTCATCTTGACCTTCGTC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 cora FBgn0010434 FBtr0086508,FBtr0086506,FBtr0086507,FBtr0086509 3 4 4 126 2R 15123911 15123994 GTCTACCGCGATAAATTGC 59 15124084 15124102 CAATGGTGGATTCGTACTG 58 NA Drosophila melanogaster 50 CG10912 FBgn0034296 FBtr0086807 1 1 1 99 2R 13944224 13944242 ATTCCACCTTCGAATCCTG 59 13944051 13944161 GAATATGTCGGACCCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4945 FBgn0034137 FBtr0087100,FBtr0087099,FBtr0087098 1 3 3 131 2R 12454486 12455297 GAATTGGAGAAGATCCAGCT 59 12455391 12455409 TTTGGGTACAGCTTTCAGG 59 NA Drosophila melanogaster 50 CG30098 FBgn0050098 FBtr0087168 1 1 1 105 2R 12242442 12242522 TACCGCTTTGTTCTAACCG 59 12242298 12242316 TTCTAGTCTGTCCATCCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG30084 FBgn0083919 FBtr0113484,FBtr0111048,FBtr0100388,FBtr0100387,FBtr0087315 3 5 6 81 2R 11652679 11652697 GTATCCTGAATAAGGCAGC 57 11651323 11652635 ATAAAGGGTCCTCTGATCTG 58 NA Drosophila melanogaster 50 CG6357 FBgn0033875 FBtr0087638 3 1 1 139 2R 9728355 9728376 CTGATCATACTATTGAGGAACG 58 9728476 9728552 CGGCTTAAAGTCAATCAGG 58 NA Drosophila melanogaster 50 Cyp6g2 FBgn0033696 FBtr0088009 2 1 1 118 2R 8076681 8076699 CTTCTGGGAGGGATTACTC 58 8076530 8076599 CGGTTGAGGAAAGTACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13185 FBgn0033661 FBtr0113071,FBtr0113072 1 2 2 81 2R 7764022 7764041 ACCTCTAAACGTAACTTGCA 59 7763895 7763978 GCGTTGAATCTGTTGATCC 59 NA Drosophila melanogaster 50 CG34229 FBgn0085258 FBtr0112422 2 1 1 173 2R 7729258 7729360 TTTGAAGCAGTTTATGCTGC 59 7729496 7729514 TGAAGGAGCATCTTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp47F FBgn0033629 FBtr0088152 3 1 2 237 2R 7265746 7266039 TAACGACATGCGAATCTCC 59 7265468 7265486 CTCCACAATGAAGATGACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG30016 FBgn0050016 FBtr0088241 2 1 1 75 2R 6762775 6762848 TATTGGATACTTCGGTGGG 58 6762718 6762736 CATTCCTGAATCTCGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33757 FBgn0053757 FBtr0091758 3 1 1 83 2R 5342087 5342106 AGAAACAATGTGATCGTGAG 58 5341970 5342041 TTTCTTAAACGGGCAAGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11196 FBgn0033248 FBtr0088870 1 1 1 128 2R 3882127 3882145 AGTTAGTTCCAAGATGGCC 59 3881847 3882035 TAGTTACGTCGCTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12824 FBgn0033222 FBtr0113050 2 1 2 138 2R 3678003 3678082 GAATTATCCTACGCATTTGGAG 59 3678236 3678255 TTAAGTAGAGGAACATGGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17493 FBgn0040010 FBtr0111255 2 1 1 60 2L 22443163 22443183 CTCACTCGTATAGTCTATGCG 59 22443204 22443282 TGGGTAATTTCAGATGTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Spn3 FBgn0028986 FBtr0081450 2 1 1 119 2L 20837006 20837082 GTTCTTATAGCGATGGGCA 59 20836905 20836923 ATTAACCTCTAGGAACGCC 58 NA Drosophila melanogaster 50 CG6453 FBgn0032643 FBtr0080998 3 1 1 155 2L 17483290 17483308 TAGATGCTTTCGTAACGCT 59 17483088 17483171 GTTCTTCGCTTAGCTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15293 FBgn0028526 FBtr0080603 3 1 1 199 2L 14109137 14109209 CTTCTGAAGCTGAAGGGAG 59 14108956 14108975 CTGAAATCCGGACCTAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15483 FBgn0032457 FBtr0080402 3 1 1 141 2L 12761228 12761246 TATCCCGTCAATATGGGAC 58 12760992 12761123 GAATTCCAATCACTTGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pdm2 FBgn0004394 FBtr0080392 1 1 2 138 2L 12673635 12680782 CCTGCCAACAAAGTTATGC 59 12684581 12684599 TCAGATTCTGTGGCATCTC 59 NA Nonspecific Drosophila melanogaster 50 CG14072 FBgn0032318 FBtr0080145 1 1 1 69 2L 10937393 10937411 TCTACAATATGCGGTCGAG 58 10937444 10937520 TTGAGACACATTCGATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nup107 FBgn0027868 FBtr0080121 1 1 1 182 2L 10733695 10733777 CAAGCAAACCATCGAACTC 59 10733531 10733549 ACTTCGTTCAGAAACAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11289 FBgn0031887 FBtr0079404 2 1 1 64 2L 7068583 7068601 ATGTGGGAGAAGTTCATGG 59 7068629 7068698 AAGTGCAAACGGTAGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lam FBgn0002525 FBtr0079100 3 1 1 96 2L 5544647 5544667 GTCAAGAGATAGACCTTCTCG 59 5544725 5544808 ACCTTGATGTCCATAAGGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG3714 FBgn0031589 FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077481,FBtr0077482,FBtr0077479 3 6 6 107 2L 4195813 4195831 GTTCTTTCGCAACAATCCA 58 4195656 4195742 TATTCGATATCGCTCTGGG 58 NA Drosophila melanogaster 50 CG10039 FBgn0031581 FBtr0077507 3 1 1 60 2L 4007892 4008751 ACTACATTTGTACCATGCG 57 4008775 4008793 ATGGATTCGCGTAGTAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Shaw FBgn0003386 FBtr0089274,FBtr0089275 2 2 2 80 2L 3721575 3721651 GCTCAACTATTACAGAACTGGA 59 3721691 3721710 CAGAACTCCAATTCCTCCTC 59 NA Drosophila melanogaster 50 Ptpa FBgn0016698 FBtr0077589 1 1 1 148 2L 3377673 3377691 TTCAATCGGTACCTTGAGC 59 3377803 3377877 TCAAAGGGACTCTTAACCG 58 NA Drosophila melanogaster 50 tRNA:N5:84F FBgn0051583 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG18139 FBgn0038522 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG17162 FBgn0039944 FBtr0113724,FBtr0113726,FBtr0113723,FBtr0113725,FBtr0113722 1 5 5 60 XHet 67548 67566 TACTCACTTAAATCGCCCA 58 66298 66316 TTATAGACGTTTGATGCGG 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG14619 FBgn0031187 FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350 2 5 5 123 X 21868683 21868703 TTTATGAACTCGGTCATCCAG 59 21868788 21868866 GTTTGGCAAATTCGTGGAG 59 NA Drosophila melanogaster 50 sw FBgn0003654 FBtr0089402 2 1 13 176 X 20101685 20103202 ATGAATTCACAGTGCTTGC 59 20101527 20101548 CTTCAGTCTCCTTCTTGATCTC 59 NA Drosophila melanogaster 50 CG32626 FBgn0052626 FBtr0073830,FBtr0073833,FBtr0073832,FBtr0073831 3 4 4 81 X 13726180 13726259 GATCATAAAGGAAGTGGCCT 59 13726118 13726136 CGACTTGCCATAGATGGAG 59 NA Drosophila melanogaster 50 CG1552 FBgn0030258 FBtr0073397,FBtr0073396 1 2 2 155 X 10947114 10947133 AGAACAATCACATAATGCCC 58 10946802 10946820 AATAAACCGGACAGCAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11265 FBgn0030049 FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964 1 4 4 141 X 8459066 8459084 ATGATATCGGTCGAAGCAG 59 8459189 8459419 ATGATTCGACCCAGTATCG 58 NA Drosophila melanogaster 50 CG3719 FBgn0024986 FBtr0070233 3 1 1 95 X 1274174 1274192 CCACTACGAGTTCGATCAG 59 1273332 1273350 GGCGTGAGTATCTTACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41529 FBgn0085671 FBtr0114118,FBtr0114119 1 2 2 64 U 3832285 3832303 CAATTGGTTTGACCTGCTC 59 3832331 3832349 GCTTCTGGTTGAGATTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41490 FBgn0085651 FBtr0114095 1 1 1 63 U 1766227 1766245 TAGAATTGGCCCATGAAGG 59 1766272 1766290 ACCTTGACTCTCAATCGAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211 1 4 7 180 4 1080191 1080209 CAACACAACCTCTCAACAG 58 1079962 1080047 TGAGAAGAGTCCATTGCAG 59 NA Drosophila melanogaster 50 CG31184 FBgn0051184 FBtr0084505 1 1 1 68 3R 19822378 19822396 AGGTGTACGTAAAGATGCG 59 19822488 19822506 TCAAATGCTGATCAAAGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5191 FBgn0038803 FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905 2 5 5 102 3R 16396363 16396821 TGTCGACAGGTAAATCCTC 58 16396887 16396905 TAATGCCCATCGCTATCAC 59 NA InUTR Drosophila melanogaster 50 CG7708 FBgn0038641 FBtr0083669,FBtr0083668 1 2 2 102 3R 14509015 14509033 TTCTGTCCTATGTTGCAGC 59 14509228 14509247 TTGTAATCTGTCTCGTTCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG31517 FBgn0047199 FBtr0082864 2 1 1 147 3R 9774636 9774654 CAAATGCCATCAGAAATCG 57 9774849 9774867 TCTTTGGTCATCTCGACAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG10126 FBgn0038088 FBtr0082686,FBtr0082687 2 2 2 61 3R 8681482 8681557 TGGATGGAAAGATAACCCG 59 8681439 8681457 AATTGAGGCACTAATGGTG 57 NA DesignRelaxed Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082456 3 1 6 160 3R 7418218 7418236 TTTGGTCAGAACACAGAGG 59 7417722 7418096 ATATTGCGGAAGACTGATCTC 59 NA Drosophila melanogaster 50 SelR FBgn0037847 FBtr0082296,FBtr0082294,FBtr0082292 1 3 6 165 3R 6692389 6692407 AACAAACACTACGAGAAGG 57 6689539 6692261 GTATACGTTCTGGTATGCTG 57 NA Drosophila melanogaster 50 Fmr1 FBgn0028734 FBtr0082200,FBtr0082198,FBtr0082199 2 3 5 192 3R 5930726 5930802 TTTCGAATCAAGATCGCTG 58 5930470 5930488 GAAGCTGCTGATCAATCTC 58 NA Drosophila melanogaster 50 neur FBgn0002932 FBtr0082001,FBtr0082002,FBtr0082004,FBtr0082003 1 4 4 224 3R 4847924 4847942 GATATAAACGGCCAACTCG 58 4847659 4847677 ATTCTCGTAGCAGATGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33324 FBgn0053324 FBtr0081727 3 1 1 77 3R 2272573 2272591 TCTTTCCGATCACATGAGC 59 2272632 2272650 GTCTTAAGGGAGCTACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1021 FBgn0037443 FBtr0081731,FBtr0081732 1 2 2 81 3R 2217072 2217090 CGATTGAACACGAAGATCC 58 2216930 2217030 GATACTCGTTGACATTATCGTC 58 NA Drosophila melanogaster 50 Snm1 FBgn0037338 FBtr0078688 2 1 1 86 3R 1382370 1382388 TGCTAACAGAAGATCGCAG 59 1382492 1382513 CAGTAAAGTAATCGACTAGGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG6838 FBgn0037182 FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186 1 4 4 88 3L 22709292 22709405 TCAGTAAGGATCCAAACCC 58 22709222 22709240 ATTAAGCAGATTCACGCTG 58 NA Drosophila melanogaster 50 eRF1 FBgn0036974 FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177 3 6 6 81 3L 20344765 20344786 TGGAGATTATCACGGATAAGTC 59 20344828 20345922 TTGTAGCGTAAGATACCGC 59 NA Drosophila melanogaster 50 tra FBgn0003741 FBtr0075364,FBtr0100244 1 2 2 136 3L 16583384 16583459 ATTTCTACGGGATGTCTGG 58 16583266 16583284 GTTTCTGTAGCCAAATCGC 59 NA InUTR Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100044,FBtr0100043 2 2 6 100 3L 14219494 14223284 CAATGAGCAACTGGAACTG 59 14223348 14223366 CTGCATATTCGGTCTTGGT 59 NA Drosophila melanogaster 50 CG11006 FBgn0027534 FBtr0075927,FBtr0075929,FBtr0114506,FBtr0075928 2 4 4 85 3L 12803756 12803840 TGATGAAGATCGATGAGAAGG 59 12803887 12803905 CAATGATAGAACGCCTGTG 58 NA Drosophila melanogaster 50 PGRP-LD FBgn0035635 FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577 3 4 4 107 3L 5775936 5776021 TGCATAAGCTGGAAAGGTC 59 5776092 5776110 GATACTGGCTCCGATAGTG 59 NA Nonspecific Drosophila melanogaster 50 CG17723 FBgn0035432 FBtr0073057,FBtr0073055,FBtr0073058,FBtr0073054,FBtr0073056 1 5 5 85 3L 3312395 3312526 CATATTAGGTGCCGTAACCT 59 3312574 3312592 GTAGAGTGGATACCCTCGT 59 NA Drosophila melanogaster 50 CG34206 FBgn0085235 FBtr0112399 3 1 1 60 2R 18051694 18051714 GTAATCATCCAGAACAGTGGA 59 18051654 18051672 GGTCTTGGTAAACTCTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GM130 FBgn0034697 FBtr0071789,FBtr0071790 2 2 2 131 2R 18013744 18013762 TAAAGAGGCCAGTCAAGTG 59 18013576 18013594 ATCTTCAGCTGGAATTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG15093 FBgn0034390 FBtr0086638 2 1 3 260 2R 14664054 14664072 CTTTGTGATCACCATGCTG 59 14663588 14663606 GCACAGGGTTGTAGATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 3 8 8 99 2R 14032395 14032483 AGGAAAGAATTCTGAGAAGC 57 14032544 14032563 CTCAATCATCGGATACAGAC 57 NA Drosophila melanogaster 50 CG12699 FBgn0046294 FBtr0086995 3 1 1 103 2R 13134409 13134429 CAGAATCTGATGCAGAATCAG 58 13134326 13134344 TATATCCACACGGTTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Psi FBgn0014870 FBtr0087073,FBtr0087072 3 2 3 178 2R 12752526 12752604 AGAATAAGCAGAACGGATCTG 59 12752368 12752386 ATACTGCGAATACTGTGCA 59 NA Drosophila melanogaster 50 igl FBgn0013467 FBtr0087361,FBtr0087362 2 2 2 160 2R 11068192 11068210 CTGAATTCGATCCCAACGA 59 11076379 11076397 ATCTATGTCCAACTCCTCG 58 NA DesignNoJunction Drosophila melanogaster 50 Cyp6a21 FBgn0033981 FBtr0087456 2 1 1 60 2R 10773288 10773309 GAAGGATTTGGTCTATCTAGAC 57 10773196 10773214 GAGAACGGTGTACAATCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13335 FBgn0033857 FBtr0087679 3 1 2 84 2R 9459466 9459548 GTGTAACCAAGGTGATTGG 58 9459400 9459418 CATTCCGAACTCTTCAGGT 59 NA Drosophila melanogaster 50 TppII FBgn0020370 FBtr0087775,FBtr0087774 3 2 2 92 2R 9040864 9040942 CCAAGATAAAGACCAACATGG 58 9040792 9040810 CTAATACAGCCAGCTTTGC 58 NA Drosophila melanogaster 50 Mef2 FBgn0011656 FBtr0088443,FBtr0088447 3 2 6 107 2R 5805515 5805533 AATCTTAGCGTACTGAGCC 59 5805020 5805445 TTCATACTTATCGTGCCCTG 59 NA Drosophila melanogaster 50 sec31 FBgn0033339 FBtr0088643 1 1 2 151 2R 4782954 4782972 AAGGAGGAAATGCTGAACC 59 4783145 4783469 TTATCTTGCGTCTGATGGG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111060 2 1 60 127 2R 3219882 3226922 ATCTCGTAGTGAACGTACC 58 3219773 3219792 TTTCTTCCATGTAACTTGGG 57 NA Drosophila melanogaster 50 Pld FBgn0033075 FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997 3 6 6 81 2R 2141752 2142360 ACATTCAGGGTTACTTGGT 58 2142405 2142423 CCCTCCTTACTAGTTCCAG 58 NA Drosophila melanogaster 50 cul-2 FBgn0032956 FBtr0085900,FBtr0085899 1 2 2 87 2L 21662617 21662694 GCCTTAATACAAGAGGTTCTC 58 21662743 21662761 CAATTAATGACTCCACGCA 58 NA Drosophila melanogaster 50 CG9264 FBgn0032911 FBtr0081463 2 1 2 81 2L 21080465 21080483 ATCCTATTCAGTGGCTGTG 59 21080526 21080609 TAGGTATCAGCAGAATGAGTC 58 NA Drosophila melanogaster 50 CG31788 FBgn0051788 FBtr0081056 2 1 1 64 2L 18257751 18257769 TCTTTCGATTGGACCTTGG 59 18257705 18257724 CTTACTACACGCTGTTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15270 FBgn0028879 FBtr0080703,FBtr0080702 3 2 2 82 2L 15091215 15091301 GAGAAACTTAAAGAGCAACTGG 59 15091343 15091362 AAATAGGGAATCGCAGACTC 59 NA Drosophila melanogaster 50 nompC FBgn0016920 FBtr0079074,FBtr0079075 1 2 3 110 2L 5358663 5358681 ATGACACCACTACACTTGG 59 5358754 5358834 ATTATAGCCGTTCTCGATGG 59 NA Drosophila melanogaster 50 CG3557 FBgn0031423 FBtr0077790 3 1 1 61 2L 2385091 2385110 ATAAGGGAACAGATAAGCCG 59 2385049 2385067 TCTTTCAGCTGTTGACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8326 FBgn0030851 FBtr0074486 3 1 1 60 X 17522778 17522796 CAAGAGGTTGATACCGAGG 59 17522736 17522756 CAGCATCCTGTTTGAATTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085631,FBtr0085634 2 4 5 237 3R 26211978 26212058 GATCTGATCAATGTGCCGA 59 26211759 26211777 TCTTCTTGAGAGTGGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Nf1 FBgn0015269 FBtr0100113,FBtr0084953,FBtr0084952 1 3 3 81 3R 21814617 21814635 GAACATATTCTACCAGGCC 57 21814679 21814751 TTCTCCAATCTTGTATCGTC 57 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0110937,FBtr0112915 2 12 12 139 3R 17037303 17037478 TGATGTGATTAATCTCGCC 57 17037581 17037599 GTTCCATGATCGTGTAGAG 57 NA Drosophila melanogaster 50 CG31406 FBgn0051406 FBtr0082235 1 1 2 257 3R 6174718 6174736 AATCTTCGAGGACCAAAGG 59 6175444 6175518 CATTATCGTTTGTCGCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 cp309 FBgn0086690 FBtr0099993,FBtr0099992 2 2 2 83 3L 15062921 15063040 CAGACAATGGAAACTTCTAAGG 58 15062859 15062877 GTAAGGGACAATAAAGCCG 58 NA Drosophila melanogaster 50 CG14961 FBgn0035439 FBtr0073069 2 1 1 61 3L 3330611 3330629 GGTACATCCAGTCCTACCA 59 3330654 3330728 ATTCGATGACTCGTAGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13568 FBgn0034965 FBtr0113115,FBtr0113116 2 2 2 93 2R 19941629 19941647 CCTCTCAGGTATTCTTCGT 58 19941485 19941572 GACTGTTGACGTACATCTC 57 NA Drosophila melanogaster 50 CG30269 FBgn0050269 FBtr0071867 3 1 1 73 2R 18555802 18556154 TGATATTATGCCTGTTCCAG 57 18556190 18556208 ATTGGTGTTCATGCAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GM130 FBgn0034697 FBtr0071789,FBtr0071790 1 2 2 71 2R 18013195 18013213 AGAACGTGGAACTACAACG 59 18013083 18013160 TTGCCTCATAATGCCTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 ap FBgn0000099 FBtr0086059,FBtr0086058 2 2 2 100 2R 1595875 1596126 CGCTAACATAGATCTCAACAC 58 1595795 1595813 GATGCTTAAACGAGGTTCG 58 NA Drosophila melanogaster 50 CG15483 FBgn0032457 FBtr0080402 2 1 1 115 2L 12760987 12761118 AGTGATTGGAATTCCAGGA 58 12760890 12760908 ACATCTCTTGCAACTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pdm2 FBgn0004394 FBtr0080393,FBtr0080392 2 2 2 109 2L 12680828 12684543 TATCAGACTGCGGAAAGAG 58 12684616 12684634 CTCAGAGTCTAGTTCCCTG 58 NA DesignNoJunction Drosophila melanogaster 50 KH1 FBgn0086130 FBtr0078009 3 1 1 60 2L 812444 812464 TCCTAGATGATACGTTCACAG 58 812486 812569 AAGTGGAAGGGAAATCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33268 FBgn0036177 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:G3:56EFb FBgn0011870 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Ppr-Y FBgn0046697 FBtr0113889 2 1 1 129 YHet 162097 191734 TGCATGAATCTATACAGGAGTC 59 191903 191921 CGGAGTTCAATAGGAACGT 59 NA Drosophila melanogaster 50 CG17162 FBgn0039944 FBtr0113724,FBtr0113726,FBtr0113723,FBtr0113725,FBtr0113722 2 5 5 60 XHet 66271 66289 GTGGATGTAGAGGACAGGA 59 66229 66247 GCCGATGAAATATTCCCTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41474 FBgn0084034 FBtr0111203 1 1 1 80 X 22150773 22151456 CAATACATTGGTATTGTGCCTG 59 22151497 22151515 ATGCCGAAATGTTGAACAG 59 NA Drosophila melanogaster 50 CG12576 FBgn0031190 FBtr0077366,FBtr0077365 2 2 2 63 X 21879091 21879109 TATATCCGGATCAACGCTG 59 21879046 21879065 GTACTTGGTGGAGACTAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sol FBgn0003464 FBtr0089677,FBtr0089679 3 2 4 195 X 21223906 21223925 AGCGGAAGTACAACTTTACC 59 21224083 21225131 GATCATGCATATGCTGCTG 59 NA InUTR Drosophila melanogaster 50 sol FBgn0003464 FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676 2 4 4 83 X 21228148 21228166 AGAGCTACAATGTGGTGTC 59 21228210 21228300 GAACGATGATTACTTGTCTCTG 58 NA Drosophila melanogaster 50 sw FBgn0003654 FBtr0089405 2 1 13 67 X 20105884 20105902 TGGTCTACACAAAGCAGAC 59 20101678 20105853 ATCAAATGCAAGCACATCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG9577 FBgn0031092 FBtr0070007 3 1 1 124 X 20061837 20061921 TTGGATCACATTCTCCTGC 59 20062008 20062027 TTACAGGTTACCGATCACAG 59 NA InUTR Drosophila melanogaster 50 CG32528 FBgn0052528 FBtr0074793 1 1 1 136 X 19640676 19640694 GAAGAAGGTCCAAGAGGAG 58 19640873 19640891 GATCACTGATGGACTGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Zw FBgn0004057 FBtr0074749,FBtr0074748 2 2 2 60 X 19565027 19565045 CAACATCAAGCAGATCTGC 59 19565154 19565172 AGGCTTCTCGATAATCACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7990 FBgn0030997 FBtr0074694,FBtr0074695 1 2 2 208 X 19093478 19095497 GATCAACACAACGATTAGCTC 59 19092799 19093309 GTATAATGTTGTAGACGCGG 58 NA DesignRelaxed Drosophila melanogaster 50 Obp18a FBgn0030985 FBtr0074701 2 1 1 61 X 19029478 19029496 TCCATACCTGATTCTCCAG 57 19029435 19029453 ATTACGAGGCGATAGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7101 FBgn0030963 FBtr0074639 3 1 1 60 X 18725712 18725731 TCACCGATCACATAAAGACG 59 18725752 18725772 CAGAATTCACAGGTGTAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CCKLR-17D1 FBgn0030950 FBtr0113001 2 1 3 82 X 18603482 18607398 ACTACTATGATTACGGCCA 57 18603418 18603436 GTATAGATGCCTCCTTCCT 57 NA Drosophila melanogaster 50 CG6123 FBgn0030913 FBtr0074578 2 1 1 160 X 18249961 18249979 AATCGAGTGAATTTCCAGC 58 18224540 18248912 TAAAGTGTCCTTGTTGACAC 57 NA InUTR Drosophila melanogaster 50 RSG7 FBgn0024941 FBtr0074350 3 1 1 83 X 16736544 16736626 GCACCTTCTACAGATTCCA 58 16736479 16736497 AAAGGTAGACGGCATAGTC 58 NA Drosophila melanogaster 50 CG9132 FBgn0030791 FBtr0074354,FBtr0074353 3 2 2 283 X 16693215 16693233 GATCAACATGCGGATAACG 59 16692662 16692681 ATATCTAGAACTGCACCCAG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Rbp2 FBgn0010256 FBtr0074281,FBtr0074280,FBtr0074279 2 3 3 258 X 16344027 16344045 CTTTGAGGTGAAGTACGTG 58 16344401 16344419 CTTCTGGAAACCGTCTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 l(1)G0022 FBgn0027329 FBtr0074086 2 1 1 61 X 15642280 15642301 GAACAAGTACACTTTCGTTGAG 59 15642323 15642341 CCTTGATCAGGATCGTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32594 FBgn0052594 FBtr0073956,FBtr0073957 1 2 2 103 X 14925094 14925222 GAATAAATCTCCGCATCGAG 58 14925288 14925306 CATGATCATGTCGATGTGG 58 NA Drosophila melanogaster 50 CG14411 FBgn0030582 FBtr0073947,FBtr0073946 3 2 2 61 X 14729739 14729757 AGCTGTACGACATTCTGAG 59 14729782 14729800 GTCCAGAAAGGATGAGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14411 FBgn0030582 FBtr0073947,FBtr0073946 2 2 2 60 X 14729742 14729760 TGTACGACATTCTGAGCAG 59 14729784 14729802 TTGTCCAGAAAGGATGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5334 FBgn0030577 FBtr0073935 3 1 1 60 X 14669935 14669953 CCCTTTGGAACAAATTGCT 58 14669977 14669995 GTTGAATGCGGTTATCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9411 FBgn0030569 FBtr0073916 3 1 1 207 X 14368849 14368867 CCTTTGGAACGCAATACAG 59 14368585 14368603 GAATACGAATCATCCAGGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG1434 FBgn0030554 FBtr0073903 1 1 1 100 X 14133631 14133717 TCCCAGTGATAATCATCTGC 59 14133780 14133798 ACAATTTGTCACACTGCTG 58 NA Drosophila melanogaster 50 CG32628 FBgn0052628 FBtr0113442 2 1 2 175 X 13609630 13609791 TATCGTCGTAAGAAGTCCAC 58 13609929 13609947 TAACCATTATGTCCGGACG 59 NA Drosophila melanogaster 50 IP3K2 FBgn0085388 FBtr0112575,FBtr0112573,FBtr0112574 3 3 3 80 X 13221585 13221603 TATGTGCCCGTTTACAAGG 59 13221714 13221733 ATAGTCACTGAGCAGATCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG4318 FBgn0030455 FBtr0073742 2 1 1 60 X 13048638 13048659 GTCAGTGAGATGAATTATGAGG 58 13048599 13048618 GCTCAATCAGTTCAACATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4404 FBgn0030432 FBtr0073694 3 1 1 60 X 12798361 12798379 GCAGAATCGAAAGTTTCGA 58 12798319 12798340 CTTGTTATCCAGAATATCGTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32651 FBgn0052651 FBtr0073672 3 1 1 60 X 12300909 12300933 GTATGGATCTAACCTATCCTTAACC 59 12300873 12300892 CAGAATTTCACTCAGTTGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 regucalcin FBgn0030362 FBtr0073576,FBtr0073578,FBtr0073577,FBtr0073575 3 4 4 99 X 11910742 11910817 AGGTTAATCCCAACACTGG 59 11910880 11910898 TACAGGATGTCCAAGTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 cac FBgn0005563 FBtr0100303,FBtr0100302 3 2 10 159 X 11856301 11856320 ATTCACCGGAATGTTTAGTG 58 11848300 11856054 GTTGATTGAGTTCGAATCCC 58 NA Drosophila melanogaster 50 CG2444 FBgn0030326 FBtr0073531 2 1 1 60 X 11598590 11598609 ACTTTGTGAACATCAATCGC 59 11598549 11598568 TTGTCGCAATTGTATTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PhKgamma FBgn0011754 FBtr0090001,FBtr0090000 3 2 3 82 X 11592561 11592579 TCTAGTCGTTGATCCTTCG 58 11592624 11594666 CACCCATTAACACCATTTGG 59 NA Drosophila melanogaster 50 CG11160 FBgn0030257 FBtr0073390 3 1 2 81 X 10942566 10942584 TCGTATCAACAACGACCTG 59 10942627 10942987 GACATCCCGATATCTAAGGAG 58 NA Drosophila melanogaster 50 Gr8a FBgn0030108 FBtr0071311 3 1 1 121 X 9122271 9122290 TTCATATACGCTTCGCAGAG 59 9122374 9122451 AAGTTCTGAATCTGCAGGG 59 NA Drosophila melanogaster 50 CG9034 FBgn0040931 FBtr0071343 3 1 1 112 X 9053728 9053746 AACTACTATGCCAAGGACG 59 9053634 9053652 CTCCTCTAGTCATCCTCGT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12125 FBgn0030037 FBtr0071246 1 1 1 133 X 8329150 8329171 CTTCTACGATATCTGTTTGGAC 58 8328974 8329056 CTGTTGTTAATGCCGTCTC 58 NA Drosophila melanogaster 50 CG10958 FBgn0030004 FBtr0071153 2 1 1 60 X 8028134 8028153 GCTAAAGATTCTTGAACCGT 58 8028175 8028194 TATATTGTCGATGCGTACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15324 FBgn0029966 FBtr0071087 1 1 1 60 X 7769355 7769375 ACACTTACTATCCCTATGGAC 58 7769397 7769415 GCAGTATAGTAGACAGGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4607 FBgn0029932 FBtr0071014,FBtr0071013 2 2 2 60 X 6964929 6964949 GAAATCCCTCAGATACTTCCG 59 6965439 6965457 GAATTCCGGTACGTAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33692 FBgn0064121 FBtr0091674,FBtr0091675,FBtr0091676 1 3 3 125 X 6773677 6773695 ATTTACGGCACCATATCAG 57 6773784 6773802 TGACCATGTGTATGATGGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 iav FBgn0086693 FBtr0070969 3 1 1 108 X 6710426 6710504 TGGGTGATTATAACTATCCCG 58 6710574 6710592 AACATGTTGAGCAACAGGA 59 NA Drosophila melanogaster 50 kdn FBgn0086133 FBtr0070906,FBtr0070907 2 2 2 153 X 6253882 6253900 GTACATCTGGAAGACCCTC 58 6254129 6254147 GTAGATCTTCGACACCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 kdn FBgn0086133 FBtr0070906,FBtr0070907 3 2 2 153 X 6253881 6253899 AGTACATCTGGAAGACCCT 59 6254128 6254146 TAGATCTTCGACACCAGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG32750 FBgn0052750 FBtr0070881 1 1 1 60 X 6090376 6090397 GACTGATGATAATTCCGTTGAG 58 6090337 6090356 TGGCCTATATTCCACTACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rux FBgn0003302 FBtr0070889 1 1 1 60 X 5930277 5930298 GTGCGTCGTACTTTATTTACAG 59 5930238 5930256 GTATGAAATCGGCATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 XRCC1 FBgn0026751 FBtr0070763 3 1 1 141 X 5225461 5225479 TCAGTTACTCAAGGGTGTG 58 5225644 5225724 GAATGCGCATATCAGATGG 58 NA Drosophila melanogaster 50 CG32774 FBgn0052774 FBtr0070662 2 1 1 60 X 4138356 4138374 CTTTGACGATTTCAGCGAG 59 4138314 4138332 TTCCAATACGTTGTTCGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GlcAT-I FBgn0066114 FBtr0070644 3 1 1 123 X 4026119 4026137 GCAAAGAGGCTATCAGGAG 59 4026224 4026242 TAGCTTGGTCTTCTCAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32778 FBgn0052778 FBtr0070622 3 1 1 110 X 3978728 3978832 GATCCCAGTGGTTACTCAC 59 3978904 3978924 CGGATTACTGCATTGATAAGC 59 NA Drosophila melanogaster 50 Vap-33-1 FBgn0029687 FBtr0070619,FBtr0070618,FBtr0070616,FBtr0070617 3 4 4 105 X 3846162 3846180 GAAACGTCTGAGAGTCTGG 59 3846246 3846812 GTGTGATTTGATCCTTCAAGTG 59 NA Drosophila melanogaster 50 CG32783 FBgn0052783 FBtr0070615 1 1 1 60 X 3841558 3841576 TAATTTAGAACTGGCGGTG 57 3841689 3841707 TTGGTTCAAGATCCTCTGG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG34336 FBgn0085365 FBtr0112538 3 1 1 111 X 3763592 3763610 TAGGGATGATCGATTCCAG 57 3763035 3763053 AGTATTCCAGCTTGTAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12206 FBgn0029662 FBtr0070528,FBtr0070527 3 2 3 102 X 3365982 3366000 AATTAAATCCGCCAAGGGA 59 3360657 3365919 CATATAGTTCTTGACATTGGGC 59 NA Drosophila melanogaster 50 Scgdelta FBgn0025391 FBtr0070277 2 1 1 80 X 1643777 1643796 GCGATAATTATGGACATGCT 58 1642313 1643736 GTTACGTGATGACTCTATGGA 59 NA Drosophila melanogaster 50 CG11403 FBgn0026876 FBtr0070245 2 1 1 60 X 1131810 1131828 AAGTTTGCTCATAGAGGCA 58 1131710 1131731 GATTCCGAAGAATCATTGAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 sdk FBgn0021764 FBtr0070132,FBtr0070131,FBtr0070133,FBtr0070130 2 4 4 60 X 622716 622734 ATGCCGGATCCATATTCAG 59 622758 624284 TCAAAGATGCCCATGTAGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG4293 FBgn0024983 FBtr0100476 3 1 4 178 X 423559 423678 CGGTAAGCTGAAACATGAC 58 423341 423359 CGTGTAAACCAGGTAAACG 58 NA InUTR Drosophila melanogaster 50 CG12470 FBgn0040371 FBtr0070069 1 1 1 60 X 202610 202628 ACCTGCGATGTTAATAGGT 58 202652 202670 AAAGAAATCCAGCAGTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40574 FBgn0085749 FBtr0114199 1 1 1 68 U 9836543 9836561 ACTATAGGTAGGCAGTGGT 58 9836592 9836611 TGCCAAGATCATATGAACAC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41423 FBgn0085644 FBtr0114088 1 1 1 88 U 2928081 2928102 CATGAAGGACTTTATGTGTCTC 58 2928535 2928554 GGATACTTTGCCTTGTACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40108 FBgn0058108 FBtr0113794 1 1 1 63 U 1340751 1340770 CAAATGGTACTAGTTCCGTG 58 1340796 1340814 GACGTGGTTACATCAAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41520 FBgn0085665 FBtr0114111 1 1 2 83 U 1352550 1352569 TTACAAATTCGTGGTACGAC 58 1352615 1352685 TTGAATAACCGTCCAACCT 58 NA Drosophila melanogaster 50 cals FBgn0039928 FBtr0089208,FBtr0089207 2 2 2 84 4 1140617 1140635 TCGCCTAGACTTATGTGAC 58 1139632 1140570 GATGTGCTTTGTCTTAAGGG 58 NA Drosophila melanogaster 50 CG1544 FBgn0039827 FBtr0085755,FBtr0113311,FBtr0085756 3 3 3 88 3R 27027463 27027481 TAACCTATTGGGACACTGG 58 27027532 27027611 ATGGATGTTAAAGTCTTCGG 57 NA Drosophila melanogaster 50 CG31021 FBgn0051021 FBtr0085666 3 1 1 86 3R 26428681 26428759 CTTAAACTGAATCGACAGTGC 59 26428807 26428825 AGCTTCCTTCATGAGATGC 59 NA Drosophila melanogaster 50 tmod FBgn0082582 FBtr0113483 1 1 7 100 3R 26398783 26399969 ACATCGACAGAATCTTCCG 59 26400033 26400051 GTTATAGGCGACCAGATCC 59 NA Drosophila melanogaster 50 hdc FBgn0010113 FBtr0085620,FBtr0085621,FBtr0085619 2 3 3 82 3R 26184088 26184106 ATTCGATCGCTATCCACTG 59 26184151 26185704 CGTATTTAACCTCGATGCAG 58 NA Drosophila melanogaster 50 CG15506 FBgn0039686 FBtr0085456 1 1 2 75 3R 25547135 25547153 GATTGACGCCAAATGAGAG 58 25547402 25547420 TCATATGGAGCATAGCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14518 FBgn0039621 FBtr0085341 3 1 1 99 3R 24851100 24851118 ACGATCAATCACACCTGTC 59 24851688 24851708 GATATTCTCCAGTGGGAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14529 FBgn0039609 FBtr0085328 3 1 1 60 3R 24699150 24699169 GGAAAGTTGACTCTACTGGG 59 24699189 24699210 GTTTAATCTGGGAGTTGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14529 FBgn0039609 FBtr0085328 1 1 1 60 3R 24699160 24699179 CTCTACTGGGTGTCTATGTG 58 24699201 24699220 AACTGTAGGCGTTTAATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17856 FBgn0039576 FBtr0085279 2 1 1 61 3R 24120011 24120029 CAAACTGTACGATGAACGC 59 24120054 24120072 TCTTGGTCATGGAAAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33213 FBgn0053213 FBtr0085271 1 1 1 60 3R 23744604 23744622 GTATTTACCAGAGGAACGG 57 23744562 23744581 AAATTTGTCGGAATTGGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5402 FBgn0039521 FBtr0085213 1 1 1 60 3R 23327995 23328014 TTTACAACAACGGAATCCAG 58 23327954 23327972 TGGATGAATCTGTTGTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14242 FBgn0039443 FBtr0085034 1 1 1 60 3R 22462758 22462778 CGGAGACGAATATCTTTACAC 58 22462798 22462818 ATGTCCAGTGGATTATTCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14551 FBgn0039408 FBtr0084971 1 1 1 132 3R 21887696 21887714 ATCAACAATCTCTGGCTGG 59 21887270 21887288 CATAGATAAGTGGTCCCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8968 FBgn0039400 FBtr0084951 3 1 1 94 3R 21803181 21803200 CGAGGACTTATCTTTGACAC 57 21803401 21803419 AAGGCAGTTCCAGATTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CHKov1 FBgn0045761 FBtr0113351,FBtr0113352,FBtr0113349 2 3 5 291 3R 21149362 21149380 GATAACCTAGTGGAGCACC 59 21149029 21149047 AATTAAAGTCCAGGGCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10238 FBgn0039280 FBtr0084782 1 1 1 115 3R 20952156 20952298 ATCAGGCCTAAGAAATCGA 58 20952059 20952077 AACTCAGCGTCATTAACTC 57 NA Drosophila melanogaster 50 CG11820 FBgn0039270 FBtr0084765 3 1 1 67 3R 20892009 20892027 ATCTCAAGCGCTACAAGAG 59 20892058 20892076 ATCGTAGACATCCTTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nmnat FBgn0039254 FBtr0084749,FBtr0084750 1 2 2 106 3R 20771798 20771877 CAAGTATCAGAGCAACATTACG 59 20771944 20771962 GAAGGTACTTGACCGACTG 59 NA Drosophila melanogaster 50 niki FBgn0045980 FBtr0084737 2 1 1 95 3R 20649804 20649879 GAACAAAGGGTACTCCTATGAG 59 20649730 20649748 ATGGACACATTGCTGTAGG 59 NA Drosophila melanogaster 50 CG13624 FBgn0039209 FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795 1 6 6 107 3R 20386540 20386627 CATTAAGGTGTACAAGCACAG 59 20386453 20386471 CTTAGCTTGTCCAGTTCCT 58 NA Drosophila melanogaster 50 CG6454 FBgn0039187 FBtr0084608 3 1 2 112 3R 20175949 20177784 GATCGAAGAATCCAGCTCC 59 20177859 20177878 TTAAATTGGGACTGCTACCC 59 NA Drosophila melanogaster 50 CG17083 FBgn0039070 FBtr0084383 2 1 1 60 3R 19112730 19112749 TCAATCTCTACAACTCGGTG 59 19112689 19112708 TCCATATTGCTAGATTCCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6569 FBgn0038909 FBtr0084155 3 1 3 128 3R 17693227 17693246 CTTATCAAGGAACGGAACAG 58 17692978 17693137 CTGTATGACCTGGTCATCTC 59 NA Drosophila melanogaster 50 CG7956 FBgn0038890 FBtr0100124,FBtr0110891,FBtr0084112 2 3 3 92 3R 17350158 17350177 TGAAATCTCCGTTTATGGTG 57 17350229 17350313 GAGTATAGTCTCCCTTTAATGC 57 NA Drosophila melanogaster 50 CG3308 FBgn0038877 FBtr0084102 2 1 1 100 3R 17097942 17097960 CATGTACCCAAACACAAGG 58 17097799 17097881 GTTGGAAGGTACAATATCTGTG 58 NA Drosophila melanogaster 50 CG17279 FBgn0038850 FBtr0084042 1 1 1 84 3R 16875906 16875924 AATTTGGCATAACCTTCGC 59 16875296 16875858 TTTCAATCCCAGTAGTCGC 59 NA Drosophila melanogaster 50 Calx FBgn0013995 FBtr0083999,FBtr0084000,FBtr0083998 3 3 3 147 3R 16838010 16838030 CCTTTGTGGTATCCATATTCG 58 16838139 16838225 GCGAATGTATCTGGTATGC 58 NA Drosophila melanogaster 50 RpS30 FBgn0038834 FBtr0083969 2 1 2 113 3R 16676605 16676623 TGGACTAGAGACCATCGAG 59 16676787 16676805 CAATCGAGGCTGAATTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 TFAM FBgn0038805 FBtr0083949,FBtr0083948 1 2 2 60 3R 16401261 16401280 CGGAAATCTTATCGATCCAC 58 16401220 16401238 TATATCTTTGGAGGCCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or92a FBgn0038798 FBtr0083887 3 1 1 80 3R 16331619 16331704 TGATATCTTCAAGCTCTCGG 58 16331747 16331765 GGATGCGTTTGTATTTGGT 58 NA Nonspecific Drosophila melanogaster 50 CG31206 FBgn0051206 FBtr0083875 1 1 1 80 3R 15933212 15933304 GATATGCTCATAATGTGCAGG 58 15933152 15933172 GTGGTAGATTTCCATGAAACC 58 NA Drosophila melanogaster 50 CG31220 FBgn0051220 FBtr0083782 1 1 1 60 3R 15475528 15475547 GATTAACACTCGCTATGTCC 58 15475570 15475588 GATTTGCAAGACCGTATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tinc FBgn0038554 FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769 2 4 4 113 3R 13691908 13692611 CTTCCTAGCAGCTCTTGTC 59 13692688 13692706 TAAGTGCTGTCCAATGGAG 59 NA Drosophila melanogaster 50 alt FBgn0038535 FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416 2 6 6 164 3R 13500933 13500951 GTAGCAACCACAATAGCAC 58 13500724 13500805 ATGTGTTTGTCGTCTTGGT 59 NA Drosophila melanogaster 50 mRpS11 FBgn0038474 FBtr0089893,FBtr0089894 2 2 3 106 3R 12898895 12898967 GGATCACAAAGGAGTCCTC 59 12899037 12899055 TAATGGTAACCGCTGTAGC 59 NA Drosophila melanogaster 50 Patr-1 FBgn0028470 FBtr0083392 1 1 1 81 3R 12872449 12872469 TCCTAGTGAGCATTTCATCTG 59 12872512 12872586 GAAAGGATTCCAAAGCGAC 59 NA Drosophila melanogaster 50 Mhcl FBgn0026059 FBtr0110973,FBtr0110974,FBtr0083229,FBtr0083231 1 4 6 98 3R 11916206 11916226 ACCAGAGCTTGATATTCATGG 59 11915531 11916146 TATTATAGGCACCAGCTGC 59 NA Drosophila melanogaster 50 pnr FBgn0003117 FBtr0083220,FBtr0083221 3 2 2 130 3R 11865150 11865168 CATTCAGACCAGGAAACGA 59 11865262 11865348 AGGGTTTGAGATCATGCTC 59 NA Drosophila melanogaster 50 CG14872 FBgn0038346 FBtr0083157,FBtr0083156 2 2 2 64 3R 11334093 11334111 GAACGAAGATACGCAAACC 59 11334047 11334065 GTTTGTAGGTCACAGTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sra-1 FBgn0038320 FBtr0083085 1 1 1 86 3R 11161917 11161935 CAGAATAACACTGCACGTC 58 11161985 11162064 CGAATGAAACGATTCGTGG 59 NA Drosophila melanogaster 50 CG4210 FBgn0038302 FBtr0083049 1 1 2 80 3R 11039816 11039897 TCTCCATGATTCAAGAACTG 57 11039939 11040026 CGTCTCGTTTAAGATCTTCC 58 NA Drosophila melanogaster 50 CG3731 FBgn0038271 FBtr0083000,FBtr0083001 1 2 2 80 3R 10717532 10717550 CAACACATGCTACAAGGAC 58 10717594 10717686 TTGAAGAGCATATCCTCGC 59 NA Drosophila melanogaster 50 Abi FBgn0020510 FBtr0112896,FBtr0082910 3 2 2 101 3R 9946188 9946430 CGCAATATCAACAGGAATCAC 59 9946107 9946125 GTCTTGATGCTCATCCTCC 59 NA Drosophila melanogaster 50 CG7518 FBgn0038108 FBtr0082697 1 1 2 114 3R 8832837 8832855 CAATTCCTATCTGGAGGGC 59 8832933 8833261 ATTGTGTATGGAGACCTCG 58 NA Drosophila melanogaster 50 CG7518 FBgn0038108 FBtr0082697,FBtr0082696 1 2 2 100 3R 8825930 8826123 TGCTGACATACATTCTGGAC 59 8826186 8826204 GAACTTTCGCAGGAAATCG 59 NA Drosophila melanogaster 50 granny-smith FBgn0040493 FBtr0082728,FBtr0082730,FBtr0082729 2 3 3 122 3R 8785059 8785077 TAGGGATAACTTGCATGCC 59 8784891 8784910 GCATCCGTGTTATTGATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Lk6 FBgn0017581 FBtr0082535,FBtr0082534 1 2 2 80 3R 7581105 7581184 GTCCATTCAAGAAGGACAC 58 7581043 7581062 TTAGAAATTAGGTCCTTGGC 57 NA Drosophila melanogaster 50 CG18476 FBgn0037931 FBtr0082443 3 1 1 97 3R 7501593 7501611 GAAATGATCCAGCATCAGC 58 7501443 7501533 TCCATAATGCTCTTGGAGAC 59 NA Drosophila melanogaster 50 CG6813 FBgn0037923 FBtr0082450 2 1 1 61 3R 7451857 7451875 CACCGACTAGTTTGAACCA 59 7451626 7451832 AGTCAGTTCATATGGACCA 57 NA DesignRelaxed Drosophila melanogaster 50 dpr5 FBgn0037908 FBtr0082395,FBtr0082394 1 2 2 222 3R 7330267 7331006 CAACTCGAATTCTGACAGC 58 7331192 7331210 CATCGAACATAAGTTGCCG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 PGRP-LB FBgn0037906 FBtr0082398,FBtr0082396,FBtr0082397 1 3 3 190 3R 7279014 7279184 AGATTGGAGAACCGAACTG 59 7278842 7278860 TTATGTGGGTAAAGTGCGG 59 NA Drosophila melanogaster 50 mRpL40 FBgn0037892 FBtr0082384 1 1 1 112 3R 7234008 7234026 GATGAACTGGAGGTTCCAC 59 7234161 7234179 CACTGCTTCTTGAGGAGAG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG4570 FBgn0037844 FBtr0082287 2 1 1 61 3R 6683264 6683285 CATGGACGATCTTAAATTCGTC 59 6683307 6683325 GCGAGTCAAGGAAGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Skeletor FBgn0020517 FBtr0091656 3 1 1 117 3R 6518760 6518778 ATTCAGTGTCACGAACCAG 59 6518916 6518935 TGATGTACCAGGAAATTCCC 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082207,FBtr0082209,FBtr0082206,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210,FBtr0082208 2 8 8 177 3R 5845147 5845239 TATCAATCGCTATCGTCCTG 59 5844989 5845007 ATAGTTGAGCCAGATTCGC 59 NA Drosophila melanogaster 50 CG16905 FBgn0037762 FBtr0082144 1 1 1 60 3R 5640482 5640503 TACTATCTATCCTCGATCAGCA 59 5640521 5640542 TGATGTATTTCTTCCACCAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8132 FBgn0037687 FBtr0082029 2 1 1 64 3R 5227958 5227976 CAACCAACTCTTTGTGGTC 58 5228004 5228022 CATAGGCTACATACTCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rel FBgn0014018 FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338 2 4 4 60 3R 4870435 4870454 TGAAGAATGTGTATCCGGAG 59 4870394 4870414 TTGACCTTACATGGAATCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11035 FBgn0037544 FBtr0081816 3 1 1 61 3R 3858441 3858459 CAGGAACCAAGGAAGTGAG 59 3858398 3858419 TCTCATAAGCCTGATTGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10435 FBgn0037539 FBtr0081820 1 1 1 60 3R 3837034 3837053 AAAGGTGGTTAGTCTATGCG 59 3836933 3836951 CAGTGGAATAAGGTGTTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG1227 FBgn0037491 FBtr0081598 3 1 1 105 3R 3074115 3074188 TTACACAGAGGACATGCAC 59 3074028 3074046 CTGTATCAGATCGTGGGTC 59 NA Drosophila melanogaster 50 CG14605 FBgn0037486 FBtr0081602 1 1 3 99 3R 3044372 3044393 CAACAGGACGATAATAAAGCTG 59 3044052 3044312 TCCCGACATAGAAATCAGC 59 NA Drosophila melanogaster 50 CG10981 FBgn0037384 FBtr0078638,FBtr0078639 2 2 2 146 3R 1651124 1651142 CTTACCCAGGATGTGATCC 59 1651306 1651540 TTCTACTGGACTCGTTCTG 58 NA Drosophila melanogaster 50 Vha26 FBgn0015324 FBtr0078701,FBtr0078700 3 2 2 106 3R 1418407 1418428 CTCAAGATCATGGAATACTACG 58 1418495 1418591 ACTTTCAGCACCTTCAGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG14667 FBgn0037317 FBtr0078788,FBtr0100433 3 2 2 162 3R 1201809 1201883 ATCCGAAAGTTCAGGTGTG 59 1202006 1202027 AGAAGGTGGTAATAATTGAGGG 59 NA InUTR Drosophila melanogaster 50 rpk FBgn0022981 FBtr0078859 2 1 1 136 3R 473035 473130 GATTTAAGGTACTGCTTCATGC 59 473227 473245 GTACTCTGCTATTCCCGAC 59 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113339,FBtr0078898,FBtr0078902,FBtr0113341,FBtr0078899,FBtr0078901,FBtr0113340,FBtr0078897,FBtr0078900,FBtr0113338 3 10 15 217 3R 110087 110105 TAGCTAAGCAGATGGTTGG 59 120999 121298 GATGTTGTACTTATCGCGA 57 NA DesignRelaxed Drosophila melanogaster 50 Gel FBgn0010225 FBtr0078971,FBtr0078968,FBtr0078973,FBtr0078972,FBtr0078969 1 5 5 135 3R 66120 66138 TCAATACGAGCAAGAGGAC 59 66237 66319 AAAGTAAAGCTTTGCCGTG 59 NA Drosophila melanogaster 50 CR32489 FBgn0046767 FBtr0076761 3 1 1 60 3L 7997569 7997588 CATATCGTATGGCAGTAACC 57 7997611 7997629 ATAGCTGAAACCAACACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32350 FBgn0052350 FBtr0070046 1 1 1 60 3L 23143232 23143250 GCTCTTTGTTCCCTTACCA 59 23143190 23143211 CATTATTGATATCCGGTGTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11241 FBgn0037186 FBtr0078536,FBtr0113188 3 2 2 191 3L 22729703 22729721 CACCTACGAGCAGATTCTC 59 22729072 22729548 TGGTTAACCTTTGGGTGAC 59 NA Drosophila melanogaster 50 CG3680 FBgn0037027 FBtr0078256 1 1 1 80 3L 20805232 20805250 GGAACTGATACAGGGTTCC 59 20805292 20805371 GTGCGTAGATAGCATTTAAGG 58 NA Drosophila melanogaster 50 Psn FBgn0019947 FBtr0078192,FBtr0078193,FBtr0114517 2 3 3 80 3L 20426898 20426919 GTGTTCATTAAATACCTGCCTG 59 20426959 20427050 AAGGACAGCAATAAGATCCC 59 NA Drosophila melanogaster 50 CG32226 FBgn0052226 FBtr0074846 3 1 1 98 3L 20292669 20292687 ACATCAGACAAGTGAACCC 59 20292320 20292610 CATGGCATTCCATTGTAAAGAG 59 NA Drosophila melanogaster 50 rdgC FBgn0004366 FBtr0074834,FBtr0074833,FBtr0074835 1 3 4 115 3L 20253983 20254001 TCCAGAAATGGTATCGCAG 59 20254080 20254321 TTTGTATAGCTCAGCCTGG 59 NA Drosophila melanogaster 50 CG7335 FBgn0036941 FBtr0074865 3 1 1 60 3L 20125848 20125866 TTCGAATGTCGTAATCCCG 59 20125806 20125824 CGTTGAATTGTATGACCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gyc76C FBgn0013974 FBtr0100157,FBtr0100156,FBtr0100155 3 3 3 89 3L 19717434 19717452 ATAACTCGAACAACATGCC 58 19717243 19717381 TGATGAGCTTGTACTCTGG 58 NA Drosophila melanogaster 50 CG6885 FBgn0036810 FBtr0075053 3 1 1 60 3L 18738153 18738172 TCATCAGAAGGATGAAGGTG 59 18738195 18738213 AGAGAATTGCTCTTAGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 W FBgn0003997 FBtr0075133 2 1 1 263 3L 18165271 18165290 ATAATCCAGTCTGCCATACC 58 18163059 18163077 AAGGGCTAGCTGATTTCAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Mip FBgn0036713 FBtr0075241 2 1 1 60 3L 17339032 17339050 CACCCTCTAATGAACCAGG 59 17338990 17339009 CTAAGTTGGTCCAGTACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14057 FBgn0036696 FBtr0075286 3 1 1 127 3L 17037746 17037820 TTACTTTGATCGGAGATGTACG 59 17037640 17037658 GGTTATCTGACCCATGGTG 59 NA Drosophila melanogaster 50 Lmpt FBgn0036672 FBtr0089452,FBtr0089457,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459 2 6 8 123 3L 16905417 16906329 CATCGACTCCAAGGATCTG 59 16906415 16906434 ACAGTAGATCTTATCCGCCT 59 NA Drosophila melanogaster 50 Rpn12 FBgn0028693 FBtr0075308 1 1 1 60 3L 16576664 16576684 CTACAACAAGATCTTTCAGGC 58 16576703 16576724 CATAAAGTAGCTATACACCTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32158 FBgn0052158 FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404 1 5 7 106 3L 16485841 16485859 CGTACAGCAACTTCAAGAC 58 16485591 16485772 AATGATTGTCGTATCCCTCC 59 NA Drosophila melanogaster 50 CG34248 FBgn0085277 FBtr0112442 3 1 1 120 3L 16263666 16263684 GCTATCCTTTGTTCTACCC 57 16263564 16263582 TCCTTTGACCACCTTATGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG33796 FBgn0053796 FBtr0091800 3 1 1 183 3L 16162920 16162939 TACTGTTCACTACCAAACGT 58 16162696 16162774 TACGATCATGTCACCTTGC 59 NA Drosophila melanogaster 50 CG32152 FBgn0052152 FBtr0075489 1 1 1 60 3L 16136081 16136099 ATCACGGTCATGAATGGTC 59 16136039 16136057 TGATGCCATCTACTTTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 brm FBgn0000212 FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523 1 4 4 159 3L 15964327 15964406 GATACCATTCTAGGTCGAGG 58 15964187 15964205 GATTCTTACGCTTTCGTCG 58 NA Drosophila melanogaster 50 GXIVsPLA2 FBgn0036545 FBtr0075509,FBtr0075508 1 2 2 160 3L 15948605 15948623 AACTGCATATACCAGTGCC 59 15948810 15948828 TCATTGCAACATGTCTCCA 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Eig71Ed FBgn0004591 FBtr0075572 3 1 1 90 3L 15645922 15645941 AGAGTGCAGAACTAAGACTC 58 15645994 15646088 TCGATTAGAACCCAAGCAG 59 NA Drosophila melanogaster 50 Trl FBgn0013263 FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704 1 8 9 198 3L 14747639 14750013 CTTGCTAAAGAATACACCATGC 59 14747462 14747480 GTAGTCGTCCTTGGTAACC 59 NA Drosophila melanogaster 50 CG9238 FBgn0036428 FBtr0075724,FBtr0075723 3 2 2 106 3L 14535466 14535485 CAACGAAACAGAATATTGGG 57 14535320 14535340 GATTCTGACCCTTATCATAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG17364 FBgn0036391 FBtr0075789,FBtr0075788 1 2 2 91 3L 13976266 13976284 TCAGCAAGACGAAGTATCC 59 13975942 13976211 AAGCGGTATTCCTGTATCG 59 NA Drosophila melanogaster 50 CG17364 FBgn0036391 FBtr0075789,FBtr0075788 2 2 2 92 3L 13976266 13976285 TTCAGCAAGACGAAGTATCC 59 13975942 13976211 AAGCGGTATTCCTGTATCG 59 NA Drosophila melanogaster 50 CG10960 FBgn0036316 FBtr0075942,FBtr0075943,FBtr0075941 3 3 3 134 3L 12820167 12820185 TATCCTGTTCGTCTATGCC 58 12819717 12820070 TCTTTGGAAACCAAGTAGGT 58 NA Drosophila melanogaster 50 CG5620 FBgn0036268 FBtr0076012,FBtr0076013 3 2 2 91 3L 12206879 12206897 CTTCTCGATATGGTCGGTG 59 12206563 12206824 AGGATCCCTTGAGATCCTC 59 NA Drosophila melanogaster 50 CG7252 FBgn0036226 FBtr0076041 3 1 1 60 3L 11941460 11941478 CATCCAATGCAACAATGGT 58 11941502 11941520 GTTGAAGTACAGACCGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5946 FBgn0036211 FBtr0110869,FBtr0110868 3 2 4 70 3L 11811201 11811219 GATCTGGTACACAGTCGAC 59 11810714 11810733 TCATATCATCGTTCACGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11652 FBgn0036194 FBtr0076131,FBtr0076130 2 2 2 161 3L 11688043 11688062 GATGTGATAGTACCACAGGC 59 11687837 11687920 CTTGTAAGCCTTTAGCAACG 59 NA Drosophila melanogaster 50 CG14135 FBgn0036193 FBtr0076111 3 1 1 182 3L 11685611 11685629 GATCAGAGGAAGAACTCGC 59 11686327 11686348 CTCTCGTTCTTTGATTCTTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 GlcAT-P FBgn0036144 FBtr0076189 1 1 3 80 3L 11176779 11176800 CATTTATATGGCGCTCTATCAG 58 11175730 11176739 GATTTCTCCTGATGCTTGAC 58 NA Drosophila melanogaster 50 Ufd1-like FBgn0036136 FBtr0076223 2 1 1 60 3L 11115276 11115294 TGATTTCCAGTTTGGACTC 57 11115234 11115252 GCTTCTATCACTGATAGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32071 FBgn0052071 FBtr0076231 2 1 1 116 3L 11096916 11096935 TATTCTTGTGCTATCCCTGG 58 11096819 11096837 GAAGTGGATGAGCTACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Elo68beta FBgn0036128 FBtr0113161 3 1 2 123 3L 11094312 11094386 CACATGAAATCCGGATAGC 58 11094207 11094226 TACACATGTAGGAAGCTCAG 58 NA Drosophila melanogaster 50 JIL-1 FBgn0020412 FBtr0076236,FBtr0076237 1 2 2 80 3L 11075163 11075182 CGGAGAACATAATGTTCGAG 58 11075042 11075121 AGCGATTATTGTAACATGCG 59 NA Drosophila melanogaster 50 CG7888 FBgn0036116 FBtr0076200,FBtr0076199,FBtr0076201 3 3 3 130 3L 11052080 11052098 TTCATCTCCCTGTTTGGAG 58 11052191 11052268 ACAAAGTTGCTTAACACCAG 58 NA Drosophila melanogaster 50 CG8072 FBgn0036070 FBtr0076295 3 1 1 60 3L 10145488 10145506 GAACCGCATTTCAACTACG 59 10145528 10145548 CATTCGATTGTCGAATCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pall FBgn0036005 FBtr0076471 3 1 1 61 3L 9480554 9480572 CTTCAAGCGCATCAAATCC 59 9480442 9480529 ATAGAATGTGGTTCCTGCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3891 FBgn0035993 FBtr0076504 3 1 1 77 3L 9434812 9434831 TTTAAGTGTTAGCACTGCAG 58 9434754 9434772 GGCATTGGTATCACTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32032 FBgn0043806 FBtr0076529 3 1 1 62 3L 9087254 9087272 GCTCCATATACACAGTGGT 58 9087297 9087678 TACGCAGCTCATCTAAACTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG8006 FBgn0035857 FBtr0076698 2 1 1 60 3L 8205622 8205640 ATTGGAGTATGAGCTCTCG 58 8205664 8205682 ATCCCGATTGAATGTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pbl FBgn0003041 FBtr0112817,FBtr0076772,FBtr0076771 1 3 5 199 3L 7895365 7900229 AAGGAATGCATTCTGGGAC 59 7895110 7895128 TTCAGGTCCTTCTTGATGC 59 NA Drosophila melanogaster 50 Hn FBgn0001208 FBtr0100225,FBtr0076811 1 2 2 92 3L 7755875 7755895 ACCAAGTATCCCATTACTCAG 58 7755948 7756027 CGAGTTCGCAAATTTAATGG 58 NA Drosophila melanogaster 50 CG14835 FBgn0035782 FBtr0076866 2 1 1 60 3L 7430222 7430240 TATTTGATGGCCCAATTCG 58 7430180 7430198 GGACATTGACGGTTAACCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18417 FBgn0035780 FBtr0076855 2 1 1 93 3L 7394162 7394183 GGACAGATGTATTTGACTTTGC 59 7394304 7394322 GCAGATCCTCTTCTGTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10592 FBgn0035619 FBtr0077129 2 1 1 86 3L 5586368 5586386 TGTCTATCAACGGCTATCC 58 5586231 5586249 AGATGGTAAAGGGAAGCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13717 FBgn0035562 FBtr0073320 2 1 1 74 3L 4629874 4629893 ATTAGTTACTTGGGTGGACC 59 4629819 4629839 ATCCAGCGATAATATCGAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15024 FBgn0040699 FBtr0073331 2 1 1 78 3L 4463134 4463152 GAAGATCTGGAGGAACCAG 59 4463074 4463093 CCTGGTATTTGTATCCATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syx17 FBgn0035540 FBtr0073293 1 1 1 70 3L 4404177 4404195 CTGGCATGAAGGAATTTGC 59 4404290 4404308 GTCGTCGTACTGAGAACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1319 FBgn0035529 FBtr0073239 3 1 1 163 3L 4292834 4292852 TAACATAACCTTCGTGCGT 59 4292979 4292997 TGGTCTTGAAGATCAGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pav FBgn0011692 FBtr0073227 2 1 1 89 3L 4243628 4243646 TGTACTCGGTGTTTGTCAC 59 4243696 4243775 TCTGCAAAGTCTTCTGTATACC 59 NA Drosophila melanogaster 50 CG14985 FBgn0035482 FBtr0073191 3 1 1 111 3L 4004262 4004280 CAGATCAAGGGTGACTTGG 59 4004526 4004547 GCCCAATCTTAATTATGTAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14964 FBgn0035410 FBtr0073110 2 1 1 101 3L 3175327 3175442 GGATAAGGACAAACAAGATTCC 59 3175247 3175266 GTAAACTCTAGGAAGGCCAG 59 NA Drosophila melanogaster 50 CG32488 FBgn0052488 FBtr0073008 2 1 1 60 3L 3015450 3015468 GAAATAACCGGGTGATGGT 59 3015408 3015426 CCGGTATAGGCTTTCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32305 FBgn0052305 FBtr0072876 1 1 1 83 3L 2250639 2250660 CATGATTAAGTACACCATGCTC 59 2250704 2250780 GGGTATGTAGCTTCTTCGA 58 NA Drosophila melanogaster 50 Patj FBgn0067864 FBtr0072781,FBtr0072780,FBtr0072779 2 3 3 113 3L 1800627 1800645 AGTAAGGGACTCCCTAGAC 58 1800782 1800800 GTGTAGTACTTGTGACGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12090 FBgn0035227 FBtr0072705,FBtr0072704,FBtr0072703 3 3 3 152 3L 1524353 1524439 ATAGTGGCTGACTTGATTGG 59 1524220 1524238 CAGGAATGTAGTGCAAAGC 59 NA Drosophila melanogaster 50 CG17181 FBgn0035144 FBtr0072563 2 1 1 244 3L 585229 585247 AATCTCCGACTCGAATTCC 59 584943 585022 TATCCATGATTGATCTGTGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG4622 FBgn0035021 FBtr0100276,FBtr0072344 2 2 2 76 2R 20421882 20421951 TGTTTAATGCAGATGGCTC 58 20421824 20421845 GACGTCGTATTTAAAGGTTTCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3394 FBgn0034999 FBtr0072268,FBtr0072269 3 2 2 248 2R 20184730 20184749 AGACGTCTTCTTTAACTCGG 59 20185258 20185276 TAATCCATGTCCACCTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4065 FBgn0034982 FBtr0100398,FBtr0072280 1 2 2 97 2R 20024113 20024134 CCAGTTATCAGTTTCTAGAGGA 58 20023979 20024055 GATAAAGAAGTTCAGCGCC 58 NA Drosophila melanogaster 50 CG5594 FBgn0025698 FBtr0072137,FBtr0072136 3 2 4 99 2R 19797271 19797290 CTACAACCAGGATGAGTCTG 59 19797351 19799213 GATATCACCTGAGTCATCGT 58 NA Drosophila melanogaster 50 wibg FBgn0034918 FBtr0072233 1 1 1 222 2R 19744002 19744022 CATCAACTCGATATCCAAGAC 58 19743800 19743818 CTCCAAGTCCTTGATCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)not FBgn0011297 FBtr0072095 2 1 1 72 2R 19593272 19593290 CACTCGCTACCCTATTTGG 59 19593218 19593236 CAATCAGTCCGAGGATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 IM18 FBgn0067903 FBtr0091694 2 1 1 226 2R 19488696 19488714 GATTCACTTGAGATTGCCA 57 19488488 19488506 TAGTCTTCGATGGTTTCCC 58 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG3500 FBgn0034849 FBtr0072038 1 1 1 243 2R 19244588 19244606 ATCAGCTTCACGATCTTCG 59 19244178 19244381 TAAAGTAAGCCAGCACCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG30417 FBgn0050417 FBtr0072041 3 1 1 60 2R 19214915 19214933 TTACCATGAGATTGTCCGG 59 19214873 19214891 CGTATTCAAACGATGCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k09913 FBgn0021979 FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961 1 4 4 99 2R 18958340 18958358 GAGATGGGATTCGATGTGG 59 18958497 18958515 GGAATCGAATAGTCTCGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30193 FBgn0050193 FBtr0071948,FBtr0113364,FBtr0071945,FBtr0071949,FBtr0071946,FBtr0071947,FBtr0071944 3 7 7 69 2R 18814926 18814944 TTGTATCGCAAATTCGTGC 59 18815045 18815063 CCTGATTCACGTACTCGTC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG30193 FBgn0050193 FBtr0071948,FBtr0071949,FBtr0071946,FBtr0071944 3 4 7 80 2R 18813126 18814633 GGCTTATAATATTGTTCTGCGG 59 18814673 18814692 ATTCCTTGACATCCTTGGTC 59 NA Nonspecific Drosophila melanogaster 50 CG3624 FBgn0034724 FBtr0071845 1 1 1 88 2R 18282134 18282152 AGGATGTGGTTCTCAAGTG 59 18282006 18282024 GGAAATGACATTATCGCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11170 FBgn0034705 FBtr0071786 1 1 1 60 2R 18065782 18065800 AGTAGACTTGTGAAAGCCA 58 18065740 18065760 GCCTTAGAAAGTAAATCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4021 FBgn0034659 FBtr0071716 2 1 1 125 2R 17662013 17662102 GTACAGCATACAACGTCCA 59 17662191 17662209 GTGCCTATACCAGGATTGG 59 NA Drosophila melanogaster 50 CG15676 FBgn0034651 FBtr0071668 3 1 1 60 2R 17559696 17559716 GAGCACGATATCGACTATCTG 59 17559738 17559756 ATACGGCTAGGTTCATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30394 FBgn0050394 FBtr0071614,FBtr0071613 3 2 2 125 2R 17209252 17209326 ATACAGAAAGGGTCATACGG 58 17209146 17209164 ATTATAAGCTCCACGGAGG 58 NA Drosophila melanogaster 50 CG10069 FBgn0034611 FBtr0071590,FBtr0071589,FBtr0071591 3 3 3 80 2R 17172235 17172255 TATCTATCAGATGTGAGCGGA 59 17172297 17172371 ATACATCAGCAGAATGGGC 59 NA Drosophila melanogaster 50 CG9406 FBgn0034592 FBtr0071570 2 1 1 86 2R 17030212 17030230 GATTCCGTCGACTATCCAG 59 17030280 17030350 TGGTTCCATTTGTCGATCC 59 NA Drosophila melanogaster 50 shg FBgn0003391 FBtr0071546 3 1 1 60 2R 16938710 16938731 GATCATTAATTACGAGGACGAG 58 16938671 16938691 GACATTCAGATCATAGTCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 IM14 FBgn0067905 FBtr0100038 3 1 1 110 2R 16757932 16757950 GAACTGTCTGAAGATCTGC 57 16758087 16758106 TCAGTTTGAATCAACGTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11159 FBgn0034539 FBtr0086248 1 1 1 128 2R 16543721 16543740 CATCCAAATCTATGCAGCTG 59 16543481 16543578 CGTTAAGGAACTCTTCGCA 59 NA Drosophila melanogaster 50 Ate1 FBgn0025720 FBtr0086318,FBtr0086317 1 2 3 80 2R 16143440 16143458 CGATACATAATGATCCGCC 57 16143302 16143397 AGGGTTTCTCATTCTGTAGG 58 NA Drosophila melanogaster 50 Fak56D FBgn0020440 FBtr0114605 2 1 5 174 2R 15319735 15319816 GAATTGCTAAGATCCTGCTC 58 15319580 15319598 ATGAGTGGTTCGACTTCAG 59 NA Drosophila melanogaster 50 ena FBgn0000578 FBtr0086583,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582 1 5 6 112 2R 15048910 15048988 CCATTCTCAAGGTCAATGG 58 15049063 15049082 CTTGACTTTCTGAATCTCCA 57 NA Drosophila melanogaster 50 CG5174 FBgn0034345 FBtr0086685,FBtr0086689,FBtr0086687 1 3 7 102 2R 14311982 14312385 AGAGCACTGTATACCAACG 59 14312451 14312469 GACAGTTTCGACGAAATGC 59 NA Drosophila melanogaster 50 lolal FBgn0022238 FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778 1 4 4 80 2R 14042986 14043404 TCACAGATGTAACACTCGC 59 14042924 14042942 TAAAGTAGGGACTGCAAGC 59 NA Drosophila melanogaster 50 CG14481 FBgn0034260 FBtr0086841 3 1 1 80 2R 13573540 13573621 ATTCCCTGAGGATTGATCTC 58 13573662 13573682 CCTTAACTTGAAGCACATCTG 59 NA Drosophila melanogaster 50 CG30460 FBgn0050460 FBtr0087011,FBtr0087009,FBtr0087010,FBtr0113378 3 4 5 103 2R 12959348 12959484 AATCTGAAGACCAAGAGATCC 59 12959265 12959283 GACATCAGGTTTGGTTTGG 58 NA Drosophila melanogaster 50 fat-spondin FBgn0026721 FBtr0086976,FBtr0086975 3 2 2 114 2R 12945252 12945270 TTAGTGGTCTGGATCTCTG 57 12945346 12945428 GAGTTGGGTGACATATAAGAG 57 NA Drosophila melanogaster 50 CG6421 FBgn0025827 FBtr0087043 1 1 1 64 2R 12760235 12760253 ACGATTATGCTCGAATCCA 58 12760281 12760299 GAAATTGTAGGGCATGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5522 FBgn0034158 FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026 2 6 6 88 2R 12676160 12676302 CTACACTATAGCAGCCTCG 59 12676354 12676372 AAATAACCGCATCCAACTG 58 NA Drosophila melanogaster 50 CG4927 FBgn0034139 FBtr0100547 3 1 1 116 2R 12460071 12460089 ATCACAAATCGACTGGGAC 59 12460721 12460739 TCATAGTTGGGATCCAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Menl-2 FBgn0029153 FBtr0100602 1 1 3 109 2R 12303124 12303200 ACTGAGGTTAGATTGGGTC 58 12303033 12303051 AAAGTCAGACAGTTGTTGG 57 NA Nonspecific Drosophila melanogaster 50 CG30324 FBgn0050324 FBtr0087181 2 1 1 93 2R 12175249 12175267 AAATTCTACGAGTTGCCAG 57 12175174 12175192 TATTGGTACAGGGACAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8405 FBgn0034071 FBtr0087210 2 1 1 80 2R 11935713 11935732 AACTCCTTCATCAAGAATCC 57 11935775 11935851 AATTTCCACTCTGATGACG 57 NA Drosophila melanogaster 50 CG30084 FBgn0083919 FBtr0113484,FBtr0111048,FBtr0100387,FBtr0087315 3 4 6 157 2R 11652754 11660560 ATAATGTGTACCGAGGTGC 59 11651322 11652635 GATAAAGGGTCCTCTGATCTG 59 NA Drosophila melanogaster 50 CG33462 FBgn0053462 FBtr0087284 3 1 1 95 2R 11584619 11584714 GACTTGCTAATAACCGTTCG 59 11584772 11584790 ATTGTACTCCTGGAAGGGT 59 NA Drosophila melanogaster 50 Vha14 FBgn0010426 FBtr0087341 2 1 1 102 2R 11567356 11567374 CAACTTTATGGTGGTCGAC 58 11567272 11567293 CTGGTTGATTAGAATGATGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arf51F FBgn0013750 FBtr0087377,FBtr0087375,FBtr0087379,FBtr0087376,FBtr0087378 1 5 5 90 2R 11211571 11211592 GAGCTGCATAGGATAATTAACG 59 11211643 11211715 GTTTCATTGCATCAGGCAG 59 NA Drosophila melanogaster 50 CG12868 FBgn0033945 FBtr0087505 1 1 1 60 2R 10492613 10492631 TGATTAACAACCGATTCGC 58 10492571 10492589 AAATGGCTGTCGATTTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 beta4GalNAcTA FBgn0027538 FBtr0087539 2 1 1 82 2R 10147578 10147598 GCAATCTTTACAACTGTCCAC 59 10147642 10147717 TGATCGATAAGGCAACCTG 59 NA Drosophila melanogaster 50 shot FBgn0013733 FBtr0087619,FBtr0087618 2 2 6 138 2R 9805407 9809061 CAGTTTAAAGACGAACGCG 59 9804646 9804667 CCAGGAGTGAAAGTAAATTGTG 59 NA Drosophila melanogaster 50 IM10 FBgn0033835 FBtr0087654 2 1 2 60 2R 9295402 9295420 GAATGGTCATACCATCGTG 57 9295444 9295518 GAAACCGTTTCAGTAGTGC 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG4630 FBgn0033809 FBtr0087765 1 1 1 91 2R 9103755 9104117 TTACACTAGGTGCCAACTG 59 9103682 9103701 TGTGAACGTGTAGATGACTG 59 NA Drosophila melanogaster 50 nemy FBgn0033765 FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875 1 6 6 192 2R 8558847 8559072 AAGCGGATGAGGAAATCTG 59 8558673 8558691 CTGTACGCTTATAGTCCCG 59 NA InUTR Drosophila melanogaster 50 spt4 FBgn0028683 FBtr0087840 3 1 1 75 2R 8521420 8521439 ATTATTGCCCTAACTACGCC 59 8521543 8521561 AGATACCACGAGTAAAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 muskelin FBgn0033757 FBtr0087885,FBtr0087886 3 2 2 80 2R 8516767 8516840 GATCAAAGAGGAACTGGCT 59 8516705 8516723 ATGCCAGAAGAGATCATGC 59 NA Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087832,FBtr0087836 2 2 8 102 2R 8505632 8505713 TCCTGAATACGATGGTCCA 59 8505779 8505797 CGAATAGCATTGACGTTCG 59 NA Drosophila melanogaster 50 CG8816 FBgn0033754 FBtr0087891 1 1 1 95 2R 8456977 8456995 TACGATTGTCCCATTCTGG 59 8456845 8456863 ATCACAGCCATGATACTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8828 FBgn0033740 FBtr0087948 1 1 1 108 2R 8355063 8355145 GACCAAGAACATTCAAACCA 58 8354974 8354994 CTGGTCGTAGTTCTTATTCAG 57 NA Drosophila melanogaster 50 Cpr49Ag FBgn0033730 FBtr0087922 1 1 1 60 2R 8295498 8295516 GATAATGTGAACAACGCCG 59 8295621 8295639 GTATTCCGTTCGATGTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13160 FBgn0033720 FBtr0087911 3 1 1 80 2R 8261510 8261530 CCAATCCGGATATACTAATCG 57 8261571 8261643 CATTGATTAAAGGAGCAGCA 58 NA Drosophila melanogaster 50 CG33012 FBgn0053012 FBtr0087909,FBtr0087910 3 2 2 80 2R 8256395 8256468 GTATGATACAGAGGCTCACTC 59 8256510 8256528 GACTCCGTGTAGTAAACGA 58 NA Drosophila melanogaster 50 CG8889 FBgn0033675 FBtr0088025,FBtr0088024 3 2 3 109 2R 7914479 7914554 CAAACTAGATAATTGCACGC 57 7914389 7914408 ATCTATCCGAATCGTACCTG 58 NA Drosophila melanogaster 50 ths FBgn0033652 FBtr0088030 1 1 1 174 2R 7695556 7697411 ATTAGTTGGCATGAGGGAG 59 7697548 7697567 CTTGTTGAACATGTAGCAGG 59 NA Nonspecific Drosophila melanogaster 50 wal FBgn0010516 FBtr0088082,FBtr0088083 1 2 2 120 2R 7578024 7578042 TACTCAATCCGATCACCCT 59 7577365 7577383 CCATCCACCTTGGAAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30015 FBgn0050015 FBtr0088243,FBtr0113356,FBtr0113357,FBtr0088242 2 4 4 159 2R 6730710 6730728 TCGGATATACTGCGATCAC 58 6730477 6730588 GAATGGAAGTCTCCAATGTC 58 NA Drosophila melanogaster 50 CG12920 FBgn0033481 FBtr0088404 3 1 1 125 2R 5957463 5957481 AAGGTGAAAGTGGTGATCG 59 5957570 5957649 AGAGAAAGACGAAGGAGGA 59 NA Drosophila melanogaster 50 wun FBgn0016078 FBtr0088553,FBtr0088552 1 2 2 182 2R 5291962 5296734 TTTAATCTTGCTCTGCGCT 59 5291417 5291816 TCCACGATGAATATCACGC 59 NA Drosophila melanogaster 50 CG13739 FBgn0033403 FBtr0088558 1 1 1 151 2R 5238261 5238279 ATATCCTGTAAGACGGCTG 58 5208667 5208685 CTTGGTTTGCTTGCTACAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Rep2 FBgn0028408 FBtr0112930,FBtr0088597 1 2 2 118 2R 5184940 5184958 AGGATGGCGAATACTTTCG 59 5185039 5185788 CGGTATAGCTGATATGGCAG 59 NA Drosophila melanogaster 50 CG18659 FBgn0027561 FBtr0088626 1 1 2 81 2R 5013709 5014934 TTAAGGACAAGACTAATCCGG 59 5013534 5013552 TTATAGGCGGTCTTCATGC 59 NA Drosophila melanogaster 50 CG8738 FBgn0033321 FBtr0088705 1 1 1 60 2R 4585962 4585980 GCCTATTTGAGGAACTGGA 58 4586003 4586022 CCTCTATTAATGGGAACCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30379 FBgn0050379 FBtr0088851 1 1 1 62 2R 3828676 3828694 TATACGCATGGGATTCGTC 59 3828771 3828789 AACGTGAACAGTAATTGGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG30380 FBgn0050380 FBtr0088881 2 1 1 188 2R 3826956 3826976 CCCAATGATCCTAAGATAGCC 59 3826788 3826806 GAACCTATAGCCATAGGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lin19 FBgn0015509 FBtr0088845,FBtr0088847,FBtr0088848,FBtr0088846 1 4 4 93 2R 3806337 3806416 GCGAAGAGGTTCTTATCGA 59 3806473 3806491 ATCCGTTTCAGATCATCGT 58 NA Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012 2 7 7 88 2R 3287506 3293551 CAAATTCTGAAAGTTCCGGAG 59 3287438 3287459 CTTGTCGTAGATCATCAAACAC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111079 2 1 60 92 2R 3245785 3245803 AGAGTTCGAACAATGGAGG 59 3236471 3245731 CTTGTACCATCTGTTAATGGG 58 NA Drosophila melanogaster 50 lbm FBgn0016032 FBtr0089033 2 1 1 174 2R 2938956 2938974 CTATATCCACCTCAGCCTG 58 2939111 2939192 GAAGCAGATTAACTCGAAGG 58 NA Drosophila melanogaster 50 coro FBgn0033109 FBtr0086208,FBtr0086209,FBtr0086207 3 3 3 147 2R 2752071 2752153 TCGGTATTTCGAGGTAACG 59 2751942 2751961 GTTCATGCGATAGAACTTGG 58 NA Drosophila melanogaster 50 CG7849 FBgn0033060 FBtr0085977,FBtr0085976 3 2 2 60 2R 1964592 1964610 CTGAGCAACATTTGCAAGG 59 1964950 1964969 GAATAGAACTAGACTGGCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or42a FBgn0033041 FBtr0086052 2 1 1 86 2R 1679083 1679164 GGAACTAACATCAGTGTCAC 58 1679016 1679035 AGATTTGGCAAGTTTCTCAG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG17683 FBgn0040002 FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300 1 4 5 80 2R 19474 19550 AATCACTTCAGTTGAGGTGG 59 19590 19611 CAGTCTAAATCAAGGAGATCGT 59 NA Drosophila melanogaster 50 snRNA:U5:35D FBgn0003936 FBtr0080770 1 1 1 60 2L 15751643 15751662 GTCGAATAAATCTTTCGCCT 58 15751602 15751621 GACTCATTAGAGTGTTCCTC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL5 FBgn0064225 FBtr0111129,FBtr0111128,FBtr0111131,FBtr0111130,FBtr0111132 1 5 5 99 2L 22428912 22428930 GTACAGATCGCCTATGCTC 59 22428771 22428849 AGTTGGTCAATCCAACCTG 59 NA Drosophila melanogaster 50 CG2225 FBgn0032957 FBtr0100618,FBtr0085918,FBtr0085914,FBtr0085915,FBtr0085917 1 5 5 105 2L 21669234 21669380 TTACAACGGTAACGATCAG 57 21669147 21669166 ACACCCATAGCTTAAATCTG 57 NA Drosophila melanogaster 50 CG2201 FBgn0032955 FBtr0100510,FBtr0085921,FBtr0085922,FBtr0100511,FBtr0085923 1 5 5 83 2L 21615151 21615169 GTCTCATCTGTTCTGGAGC 59 21615024 21615105 CGAGCAATACCATATTCCCA 59 NA Drosophila melanogaster 50 CG9243 FBgn0032926 FBtr0110945,FBtr0081498 3 2 2 60 2L 21168068 21168087 ATGAGCGAAATATCTGTTCC 57 21168027 21168046 ACGAAGAGTATAAGCACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31675 FBgn0051675 FBtr0081429 2 1 1 163 2L 20868505 20868524 TTTGAAACGGGTATTCAAGG 58 20869242 20869260 ATCCGTTGCAGTAGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9317 FBgn0032879 FBtr0081394,FBtr0081395 2 2 2 95 2L 20729942 20729960 CCGGATGACTATTGGTGTC 59 20729654 20729883 TTCGTCGTTATCCAGTTCC 59 NA Drosophila melanogaster 50 Hr38 FBgn0014859 FBtr0081397 2 1 2 61 2L 20690174 20690192 TGAGGCTTACTAACCAAGC 59 20689590 20690149 ACTAAAGGAGCTATTGGGT 57 NA DesignRelaxed Drosophila melanogaster 50 Taf13 FBgn0032847 FBtr0081340 3 1 1 84 2L 20093243 20093332 AGATCAAGTATGTGGGCAC 59 20093177 20093196 TAGGTTTGGCTTATACCTGG 58 NA InUTR Drosophila melanogaster 50 CG34051 FBgn0054051 FBtr0100106 1 1 1 114 2L 19960589 19960672 ATTTCGAACTGGAGCAGAG 59 19960493 19960514 CACCGTCAAAGAATAACTTCAG 59 NA Drosophila melanogaster 50 Rab9 FBgn0032782 FBtr0081206 3 1 1 159 2L 19434714 19434732 GTTCTACAGAGGATCGGAC 58 19434853 19434934 CGGAATGTCGTTCTTATTTCC 59 NA Drosophila melanogaster 50 CG17549 FBgn0032774 FBtr0081221 3 1 3 82 2L 19387760 19387870 CAACGATATTCGCATCCAG 58 19387696 19387714 CTCCTCTGTACCGATTCTG 58 NA Drosophila melanogaster 50 CG10602 FBgn0032721 FBtr0089317 1 1 4 103 2L 18859028 18859046 CATTTACGATTGCACCTGG 59 18857395 18858962 GAGTAGAGATCATTGGGTGG 59 NA Drosophila melanogaster 50 Pde11 FBgn0085370 FBtr0112544,FBtr0112545 2 2 2 80 2L 18535124 18535199 CTCCTTCCAGATTAAAGCCT 59 18535063 18535083 CACTGATCAAAGTGATGATGC 59 NA Drosophila melanogaster 50 kel FBgn0001301 FBtr0081043,FBtr0081042 1 2 2 230 2L 18135777 18135795 CTACGTATACACTGCCACG 59 18134818 18135583 ATCACCTCGTTGAAATGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG5131 FBgn0032644 FBtr0080984 3 1 1 62 2L 17485349 17485367 TATTAGCAAAGCAGATGCC 57 17485393 17485411 AAGTCTGCATAGCATTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr36c FBgn0045485 FBtr0080964 3 1 1 112 2L 17181320 17181338 ATTTATCGGTCATGCTCCA 58 17181414 17181488 GTTCTCAAAGGCTTCTTCG 58 NA Drosophila melanogaster 50 CG13284 FBgn0032614 FBtr0080927,FBtr0080926 1 2 2 142 2L 16843628 16843646 AAATGAATGCCTACACCGA 59 16843386 16843522 AATGGCATACTGAATGCCA 59 NA Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080904 2 1 13 127 2L 16770955 16770973 TGGTGCTGATATTGAGACC 59 16771130 16771950 GACAGTATTCTTTAACACCGG 58 NA Drosophila melanogaster 50 Idgf1 FBgn0020416 FBtr0080860 3 1 1 60 2L 16445566 16445586 TTCTACTACAAGGACATCACC 58 16445606 16445626 TGAGGAGAATCTTCAGTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 chif FBgn0000307 FBtr0080838 1 1 3 145 2L 16343299 16344438 CCTGAAGAAGGAGACTTGC 59 16343172 16343193 GCATTCTCCTTATCCTTATCCA 59 NA InUTR Drosophila melanogaster 50 CG3975 FBgn0027559 FBtr0080713 2 1 1 60 2L 15256127 15256145 CCTACATCAAAGAGCAGGA 58 15256085 15256105 TTGCCATGGACTAGAAATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33678 FBgn0053678 FBtr0091658 3 1 1 60 2L 15071107 15071125 ACTACAAGAGGAGGTACCA 58 15071149 15071167 CTGTGCAACTTCTAGGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GABA-B-R1 FBgn0028924 FBtr0080697 1 1 1 83 2L 15026310 15026392 AGAGGAATTTCGACATCGAC 59 15026438 15026456 TGATATCCCTCCGGATAGC 59 NA Drosophila melanogaster 50 osp FBgn0003016 FBtr0089866 1 1 3 82 2L 14600871 14601145 TTTGAGCTACCAAGGTCTG 59 14600807 14600825 ATGATGCTGGTGATGTCTG 59 NA Drosophila melanogaster 50 CG16876 FBgn0028876 FBtr0080592 1 1 1 60 2L 14047751 14047771 ATCATAGTAAAGCAGCCATCC 59 14047792 14047811 TCTCTGTGATCTTCTCAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31731 FBgn0028539 FBtr0080535 3 1 2 134 2L 13785507 13785800 TTTGCTTCCACTCAGATCG 59 13785897 13785916 AATAGTTGTAGAGCATGGCA 59 NA Drosophila melanogaster 50 CG9395 FBgn0032506 FBtr0080475 2 1 1 85 2L 13351826 13351937 CTCATTGGATCACTTAATCAGC 59 13351762 13351783 GCAAACTGAAGATAGTAGAAGG 58 NA Drosophila melanogaster 50 Pect FBgn0032482 FBtr0080441 2 1 4 162 2L 13208447 13208467 GTGGACACATATCATTTGGTC 59 13208767 13209480 TCGAAGAACCTTCTTTCTCG 59 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090023,FBtr0090018 3 2 17 198 2L 12726932 12726950 TTATATCAAGAGCGTTGGC 57 12727112 12729198 GAAGTACGAGGTAACTTGG 57 NA Drosophila melanogaster 50 pdm2 FBgn0004394 FBtr0080392 3 1 2 138 2L 12673635 12680782 CCTGCCAACAAAGTTATGC 59 12684581 12684599 TCAGATTCTGTGGCATCTC 59 NA Nonspecific Drosophila melanogaster 50 bun FBgn0010460 FBtr0080379 2 1 6 63 2L 12460637 12460658 GAATTGGCTATACGAGATTTGG 59 12460595 12460614 ATTAGGCACCATCACATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5435 FBgn0032431 FBtr0080387 1 1 1 68 2L 12430283 12430301 TATTGGGTCATCCACTTCG 59 12430149 12430167 AAATGAGCTTTACGCTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 Aats-thr FBgn0027081 FBtr0080333,FBtr0080332,FBtr0080331 1 3 3 63 2L 12104541 12104694 ATACTCGCAAGGAACTCAG 59 12104721 12104739 TTCTCCCAGAAGACATTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31867 FBgn0051867 FBtr0080224 1 1 1 60 2L 11144877 11144897 GTGGATATACCTGCTAATCCT 58 11144837 11144856 AAGATTGAGTCTCACAACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 piwi FBgn0004872 FBtr0080166 2 1 1 83 2L 10983721 10983740 GAGAGCAATGGATGATTGTG 58 10983532 10983675 GATGAGTATCTTTCGGCGT 59 NA Drosophila melanogaster 50 CG7296 FBgn0032283 FBtr0080129 1 1 1 68 2L 10686460 10686478 GTGGACTGTACGGTTAGAC 59 10686410 10686429 CACAGTCATTTCTTATCGCT 57 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Pp2A-29B FBgn0005776 FBtr0005088,FBtr0100533 3 2 2 98 2L 8367857 8367934 GATGATGTAGAGCACCTGG 59 8367995 8368014 CAGATCAACAAACTTCTCGG 58 NA Drosophila melanogaster 50 CG7795 FBgn0032019 FBtr0079610 3 1 2 103 2L 8317345 8317643 TTATCTGCAGATGTACACGG 59 8317261 8317279 ACTGGTTGGGATAATGTGG 59 NA Drosophila melanogaster 50 CG7179 FBgn0020880 FBtr0079497 2 1 1 60 2L 7776096 7776114 GGATGAGGATAAGGCTCAC 59 7776054 7776072 TATGGATTGGGACGAAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr28b FBgn0045495 FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458 2 5 5 118 2L 7455130 7455213 ATTGTATTTCACGATCAGCG 58 7455031 7455049 TATTGAAGGTCTCACAGCA 58 NA Drosophila melanogaster 50 wg FBgn0004009 FBtr0079433,FBtr0079432 3 2 2 101 2L 7313109 7313127 GAATCTGCACAACAACGAG 59 7314370 7314388 CAGGTCTTCACTGTACACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11266 FBgn0031883 FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638 2 7 7 117 2L 7036714 7036822 TTTATCACGTACCACAATGC 58 7036902 7036920 TATTCATGTCCAGTCGCTC 59 NA Drosophila melanogaster 50 Rab30 FBgn0031882 FBtr0079426,FBtr0079428,FBtr0079427 1 3 3 60 2L 7031918 7031936 AGCTACAAATCTGGGACAC 59 7031876 7031894 TAGTAGCTTTGCGTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nrv2 FBgn0015777 FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382 2 5 5 86 2L 6791574 6791593 ACTTTGATCTGGTACAAGGG 59 6791313 6791525 TACTTTGTACACCGCAAGG 59 NA Drosophila melanogaster 50 CG11050 FBgn0031836 FBtr0079292,FBtr0079293,FBtr0079291 2 3 3 105 2L 6616056 6616074 ATCCAAAGACGATAAGCGA 58 6616143 6616222 CTCGTATTCCTCAAACAGC 58 NA Drosophila melanogaster 50 CG9505 FBgn0031805 FBtr0079253 3 1 1 60 2L 6368501 6368519 CATTACCAGTCATGCATCG 58 6368543 6368561 CCAGTAGCTCGATGTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tkv FBgn0003716 FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086 1 4 4 224 2L 5221390 5221470 TTCTCATGTGCAAGGTAGC 59 5221184 5221202 ATAAGCTAGCCACGATCAG 58 NA DesignRelaxed Drosophila melanogaster 50 jet FBgn0031652 FBtr0110896,FBtr0079057 1 2 2 76 2L 4949020 4949038 ACTTAACAAGCTCACCGTC 59 4948962 4948980 AGTTCCCGATTTGGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ine FBgn0011603 FBtr0077447,FBtr0077448,FBtr0077446,FBtr0077449 2 4 4 107 2L 4468743 4468761 GAAGACTGTCGAAGAACGT 59 4468589 4468672 ATACCCAGATGGCAAAGAG 59 NA Drosophila melanogaster 50 bowl FBgn0004893 FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493 3 4 4 122 2L 3780466 3780484 CACCAAGTCGTACAATCTG 58 3780569 3781912 TGAATATACCTGTGATCCCT 57 NA Drosophila melanogaster 50 v(2)k05816 FBgn0042627 FBtr0077657 2 1 1 94 2L 3055305 3055386 CTCAAGGAGATTTGCAGTG 58 3055443 3055462 TCGATGATCTGTAGAGTGTG 58 NA Drosophila melanogaster 50 CG17221 FBgn0031500 FBtr0077654,FBtr0077655 2 2 2 85 2L 3041373 3041391 ACAGAAACTAGTGGAGCAG 58 3041495 3041513 TCTTCTCAAAGGCCTTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 syt FBgn0004242 FBtr0077726 2 1 4 80 2L 2793377 2793395 ATGGAAAGGGTAAGAAGGG 58 2793258 2793334 TATCAGGCTGAACTTTCTCC 59 NA Drosophila melanogaster 50 oaf FBgn0011818 FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780 3 4 4 104 2L 2495397 2495415 TATTACCTCCAACATTGGC 57 2495483 2495583 AGGATTTGAACCTCATTGC 57 NA Drosophila melanogaster 50 CG10874 FBgn0031395 FBtr0077848 1 1 2 120 2L 2191942 2191960 TGACCTATGTGAATGAGCG 59 2191069 2191859 TCATCACGATCTTTCAGGAG 59 NA Drosophila melanogaster 50 CG5440 FBgn0031331 FBtr0077923 3 1 1 80 2L 1334573 1334593 GCTTCATTTGTCTGGATATCC 58 1334635 1334653 GGGAGCAAATTGATAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dock FBgn0010583 FBtr0078013,FBtr0078015,FBtr0078014 1 3 3 101 2L 831534 831552 TATTATGGAGCCATCACCC 58 831616 831722 GTCTCCCATGTTAGTCTCAC 59 NA Drosophila melanogaster 50 CG11376 FBgn0031216 FBtr0078103 2 1 1 99 2L 95215 95233 ATTGGACTTTCCTCAAGGG 59 95294 95366 GGGCAAATCAGACAAATTCTC 59 NA Drosophila melanogaster 50 CR41508 FBgn0085791 FBtr0114244 2 1 1 63 YHet 320309 320328 CAGAAACCATTTGACATGGT 58 320194 320284 CTTGATCATCCTTTACTGCT 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG41472 FBgn0084032 FBtr0111205 2 1 1 61 X 22035767 22035788 CTCTAACTCTTCAAACAATCGC 59 22035810 22035828 CAACAACCAGTTCAAACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12564 FBgn0031179 FBtr0077216 2 1 1 240 X 21306649 21306667 CATTGTGCCCAAATGTCAC 59 21306347 21306445 AATCTGCATCTTCATGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15460 FBgn0031104 FBtr0113006 3 1 1 108 X 20261540 20261558 GACTCGATCTTGGACATGG 59 20261394 20261468 TCTTTACGTCCAGCATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1631 FBgn0031101 FBtr0077297 1 1 1 93 X 20198737 20198814 ATAGCGAAGATGAGAGCTG 58 20198871 20198889 AAGTCGCTGTCTGATTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17068 FBgn0031098 FBtr0077341 1 1 1 60 X 20120079 20120097 GGTATCCCATGTACTCCTG 58 20120037 20120055 TTGAACATGAACTTCACGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12701 FBgn0031071 FBtr0074808,FBtr0074807 3 2 2 60 X 19675007 19675026 CAGTCACCCTATCATCAGTC 59 19674966 19674984 CGTACTCCTGCTTGATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14210 FBgn0031040 FBtr0074740 1 1 1 92 X 19510516 19510534 AAGAAGACCGTTAACCGAC 59 19510590 19510608 GTCCTTGATCTCCTTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7322 FBgn0030968 FBtr0074654 2 1 1 190 X 18750417 18750435 AATGTCACCCAATCTCTGC 59 18750245 18750263 GGATTAACGGAATTGACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dik FBgn0030891 FBtr0074510 2 1 1 64 X 17980256 17980274 ACAGATGCTCTCCAATGTG 59 17980302 17980320 TGTCGAGGCTATCATACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8959 FBgn0030691 FBtr0074192 1 1 1 136 X 15677074 15677092 ATATCACCGATTGCGATCC 59 15676900 15676918 TAAATTACCAGATCGCGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG9095 FBgn0030617 FBtr0074026,FBtr0112984 2 2 2 87 X 15039449 15039468 GGTTACGAGATGATAGGACG 59 15039308 15039399 ACTCCACAATCTCACAACG 59 NA Drosophila melanogaster 50 CG9941 FBgn0030514 FBtr0073843 1 1 1 88 X 13613452 13613470 AGTCCAACAACGTAAGCTC 59 13613317 13613335 GTAGCTATCACTGGAGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32652 FBgn0052652 FBtr0073671 2 1 1 89 X 12305612 12305687 AGCTAGGATAGTTGAAATGGTG 59 12305544 12305562 AAGCGCAACATTTGTATCC 59 NA Drosophila melanogaster 50 sbr FBgn0003321 FBtr0073411 3 1 1 82 X 10728726 10728927 AACTGGTTAAGTTGGACGG 59 10728662 10728680 CTTCGTTTCGAGAAGACGT 59 NA Drosophila melanogaster 50 CG2889 FBgn0030206 FBtr0071450 3 1 1 134 X 10370033 10370051 ATTGAAGACCCACTTCCTG 59 10370149 10370224 ATGGTGCAGGTAAATAGCT 58 NA Drosophila melanogaster 50 Hk FBgn0001203 FBtr0089804 3 1 2 98 X 10135765 10136883 TATGGAGGAGTTCAGTCGT 59 10135685 10135703 AGATTCTTGTACCGCAGTC 59 NA Drosophila melanogaster 50 CG12057 FBgn0030098 FBtr0071304 1 1 1 77 X 9086138 9086156 AACTCGTACAAGAACTCCG 59 9086197 9086215 ACTGACCAAATAGACGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ld14 FBgn0030090 FBtr0071349 1 1 1 113 X 9020331 9021112 TTGATTGCACAAACTGCTG 59 9020236 9020254 CTATCATCTCATCCCAGCC 58 NA Nonspecific Drosophila melanogaster 50 CG1885 FBgn0030066 FBtr0071268 1 1 1 73 X 8793915 8793933 ATCCGGATAAATATGCCGG 59 8793860 8793878 GAGATTGAGGGATTCAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12659 FBgn0040929 FBtr0071229 1 1 1 116 X 8485679 8485697 TTTAAGCGTCCGTTTACCT 59 8485522 8485599 ATTGAGCGTGAAGTAGGTG 59 NA Drosophila melanogaster 50 GIIIspla2 FBgn0030013 FBtr0071159 3 1 1 107 X 8052053 8052071 TGGAACGTACAACGATCTG 59 8052141 8052160 AAGAGATCATAGCGATTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1514 FBgn0029976 FBtr0071092 3 1 1 108 X 7808922 7809004 GAGTGATATTGACCTAACACTG 58 7809073 7809091 GTAGAAACCAATCAGAGCG 58 NA Drosophila melanogaster 50 CG14425 FBgn0029933 FBtr0100572 2 1 1 60 X 6979545 6979664 GCGAGACTATAAGACTGGC 59 6979503 6979521 CATTTCCGATGTGAAGTCC 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG3342 FBgn0029874 FBtr0070918 3 1 1 62 X 6421265 6421286 GGATGAGAAGGAATTCATAACG 58 6421224 6421242 CTGAGATAGTGCTCCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3566 FBgn0029854 FBtr0089869 1 1 2 192 X 6170573 6170591 TACGATGTGACCAAGTTCC 59 6170253 6170271 ATTCTCACCTAATTGGGCT 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Tre FBgn0003747 FBtr0070802 2 1 1 88 X 5575442 5575527 TTTCACTGATGGAACACCT 58 5575579 5575597 CAAATAGGATTCCACGGGA 59 NA Drosophila melanogaster 50 CG12691 FBgn0029701 FBtr0070646 1 1 1 60 X 4160358 4160376 CAGATCACAGTAAGCCTCC 59 4160400 4160418 GATAGTTCTTCACTCGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ec FBgn0000542 FBtr0070606 1 1 3 117 X 3730856 3735357 TTCTTTCAGACCTGCAAGG 59 3735438 3745002 AAAGTTCCTTTAGAGCGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG13758 FBgn0040378 FBtr0070436 1 1 1 80 X 2470076 2470157 CACTGGAAAGCGAATATCAC 58 2470200 2470218 TCGTGAATCATCACAATGC 58 NA Drosophila melanogaster 50 Or2a FBgn0023523 FBtr0070397 1 1 1 70 X 2141352 2141370 TTCTCTTATCTACGCAGGC 58 2141404 2141492 ATGTGAACCTCATGACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4325 FBgn0026878 FBtr0070342 3 1 1 74 X 1937691 1937709 TCGGACAATATACAAGCCG 59 1937443 1937653 TGATTGCTTTCTCCAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32806 FBgn0052806 FBtr0070301 2 1 2 60 X 1683900 1683919 GCACAGATAGCGTCTATCTC 59 1683940 1683960 CTTTGAATAGCTCGCATTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14628 FBgn0040365 FBtr0070180 2 1 1 60 X 1039733 1039752 GAATTGAACTCACCAGTGGA 59 1039775 1039793 GGAAGGTTTCTCACAAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40878 FBgn0085531 FBtr0113944 1 1 1 73 U 9833676 9833694 TTACAAGGTGTGGAGTGTG 59 9833731 9833749 GCTTTAAACTAATGCCGGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40376 FBgn0058376 FBtr0113876 1 1 1 60 U 1972943 1972963 GGTAATTAATGGACCTTGGAC 58 1972984 1973003 GGAATGTACCATTAGCTCAC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40108 FBgn0058108 FBtr0113794 3 1 1 65 U 1340749 1340768 ACCAAATGGTACTAGTTCCG 59 1340796 1340814 GACGTGGTTACATCAAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41327 FBgn0085617 FBtr0114061 1 1 1 96 U 1165866 1165884 TCGTCATCATTCTCAACCA 58 1165944 1165962 CCGACTAGGATGTATTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-3385a FBgn0082962 FBtr0113577 1 1 1 61 3R 1422156 1422175 GGGTTCATGTACAGTATGCA 59 1422114 1422132 ACGGCATTGGGTTATATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bxd FBgn0020556 FBtr0083342 1 1 4 80 3R 12579443 12579463 TATTACACAACTCCAGAGGAC 58 12570417 12579402 TGGGAAGTGATAATGTGCTC 59 NA Drosophila melanogaster 50 CR41470 FBgn0084050 FBtr0111305 1 1 1 60 3R 217928 217946 ACAATATCCAAGTGCCTCG 59 217886 217904 TTGTCTGATTAGCTGCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Map205 FBgn0002645 FBtr0085876 2 1 2 113 3R 27887173 27887191 AAACACGTACGAGCTAGTG 59 27884778 27884797 ATTAATACCTTCCGGTGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15555 FBgn0039839 FBtr0085764 2 1 1 94 3R 27092045 27092063 ATTTGGAAGGTGGAGTTCC 59 27092121 27092202 TTGCCACTTAGATTGTGGG 59 NA Drosophila melanogaster 50 CG15554 FBgn0039820 FBtr0085736 1 1 1 86 3R 26951979 26952383 GCTGTTAACCCTAATGGCA 59 26952433 26952451 CCGTAGACATAGGCTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33920 FBgn0053920 FBtr0091924 3 1 1 66 3R 26870354 26870373 GATTTCATTAGGCCCTTCAC 58 26870250 26870268 TTTCGATCACGAGATCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 spdo FBgn0011716 FBtr0085651 2 1 1 133 3R 26303881 26303979 CTACATGATAGCACACCTCG 59 26304075 26304093 AACTATAGCTCCTGTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634 1 4 5 103 3R 26212311 26213196 AGATTTCAAGTGCTCCCTG 59 26212226 26212244 TGATCTCCTCCTGGATCTG 59 NA Nonspecific Drosophila melanogaster 50 CG31038 FBgn0051038 FBtr0085495,FBtr0085498,FBtr0085499,FBtr0085494 1 4 6 242 3R 25705388 25705406 TTACTCTGACTAGCTGCCA 59 25723101 25723119 CTTCCACATCACTCAGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7829 FBgn0039703 FBtr0085531 2 1 2 65 3R 25643103 25643121 CATGGACTATGACATCGGT 58 25643005 25643077 GCCTTTACCTTTCTAGATAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11951 FBgn0039656 FBtr0085403 2 1 1 80 3R 25062309 25062406 CCGAACAGGACTTAAACTG 58 25062247 25062265 AAGATTACCCACTGATCGG 58 NA Drosophila melanogaster 50 CG11880 FBgn0039637 FBtr0085373,FBtr0085372,FBtr0085371 1 3 3 73 3R 24951436 24951454 ATCACTGGATGTGACACTC 58 24951560 24951578 TTCATAGTGTCCCAGACGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG14528 FBgn0039611 FBtr0085329 3 1 1 60 3R 24702601 24702620 ATGCATCTGAACATCAACTC 58 24702640 24702661 ACACCTCTCCATATACATTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12879 FBgn0039540 FBtr0085218 3 1 1 103 3R 23520157 23520932 AAGAAGTGTGACCATAGCG 59 23520999 23521017 GTGTTCAGGATGAGATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp97E FBgn0039465 FBtr0085083 2 1 2 89 3R 22788880 22788900 ATCTTCTTCAGCTTCACTGAG 59 22788165 22788733 AGCCAGGACTTCTAATTTAGAG 59 NA Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100338,FBtr0100337,FBtr0100335,FBtr0100340,FBtr0100339,FBtr0085093,FBtr0100336,FBtr0100334,FBtr0085092 1 9 9 85 3R 22700512 22700596 CAGTGGATAAGGCTATCCT 57 22700445 22700466 CTTGTCCAGGTTATAAATGGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6425 FBgn0039449 FBtr0085047 3 1 1 163 3R 22541891 22541910 TCAGAGCTAAGGGATACTCC 59 22541682 22541700 AATTGGTACTCGCTGAAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14354 FBgn0039376 FBtr0084905 1 1 1 242 3R 21641477 21641495 GAATATTGCCCAGAAGGCT 59 21641701 21641774 TTTGTCTGTGAACCAACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LpR1 FBgn0066101 FBtr0113480,FBtr0084926,FBtr0084925,FBtr0113481,FBtr0113479,FBtr0113482 2 6 6 132 3R 21567974 21567992 TCGATGAACTTCGAGAACC 59 21567719 21567878 CTATGACGGGTGAGTACTC 58 NA Drosophila melanogaster 50 CG5112 FBgn0039341 FBtr0084878 3 1 1 60 3R 21318433 21318453 AGCTCTTCAAGAAGATACTGG 59 21318475 21318493 ATCAGACCATAAATGGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13653 FBgn0039288 FBtr0084804 2 1 1 60 3R 21021866 21021884 GCCAGGGATACTGATTACG 59 21021908 21021926 TTAGACCCACATCTCCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mld FBgn0083077 FBtr0111013,FBtr0111012 3 2 2 291 3R 20445546 20445564 GTATAAGCCAAGGCTACAG 57 20445819 20445902 CATTTCCACTGTTGATGGA 57 NA DesignRelaxed Drosophila melanogaster 50 nAcRalpha-96Aa FBgn0000036 FBtr0084619 3 1 1 141 3R 20231141 20233047 GTTACATGGTGGACTTGAG 57 20231018 20231036 CTGTAGAACTTCTCGTTCC 57 NA Drosophila melanogaster 50 CG10221 FBgn0028475 FBtr0084467 2 1 1 80 3R 19580925 19581005 AATCAAGGAGTCACCTTACAG 59 19580865 19580885 ACGGTAATCATGTACAAGTCC 59 NA Drosophila melanogaster 50 CG4467 FBgn0039064 FBtr0084390,FBtr0110801 1 2 2 80 3R 19057612 19057630 CTTTCCAGTCACCTATGTG 57 19057481 19057569 ACATTGAAGGTTACATCCAC 57 NA Drosophila melanogaster 50 CG7031 FBgn0039027 FBtr0084313 2 1 1 125 3R 18630085 18630506 ACGTTAATTTGCAGATGCC 59 18630592 18630613 CCATATTGTGATACAATGGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6937 FBgn0038989 FBtr0084266 3 1 1 195 3R 18411077 18411158 GAAGGTTGTCAATAAGGCC 58 18411317 18411335 TTCCACCAGTAAGTTGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 oa2 FBgn0038980 FBtr0100322,FBtr0084260 2 2 2 83 3R 18335918 18338472 GAAATTGCGCATCATTACC 57 18338518 18338537 TTAAATGTCATCGCACAGAG 58 NA Drosophila melanogaster 50 CG7059 FBgn0038957 FBtr0084221,FBtr0084219,FBtr0084220 3 3 3 140 3R 18217574 18217648 AGCACATTGAGGGAATCTC 59 18217750 18217770 GCCTAATATACTCCTGATCCC 58 NA Drosophila melanogaster 50 CG5802 FBgn0038863 FBtr0084017,FBtr0113259 1 2 2 80 3R 16965292 16965420 GTATTTACAGGTGAGGCCA 58 16965463 16965482 AGCTATCAGCGATAAATGGG 59 NA Nonspecific Drosophila melanogaster 50 Rlip FBgn0026056 FBtr0084002 2 1 1 81 3R 16844665 16844684 GATGTCTCACCGACTAATGG 59 16844727 16845176 GGGCACATACTTTATCAGCT 59 NA Drosophila melanogaster 50 Hs6st FBgn0038755 FBtr0083846 1 1 1 80 3R 15764172 15831968 TGTCAAGATCAGGTATGCG 59 15764110 15764128 TGGGAGCTCATTATAAGCG 59 NA Drosophila melanogaster 50 CG17836 FBgn0038661 FBtr0083701,FBtr0113246,FBtr0083702,FBtr0083703,FBtr0083700 2 5 5 92 3R 14751507 14751633 AATGATGATCGGTTCGAGG 59 14751689 14751707 CTCTACGATGTCTGCATGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14291 FBgn0038660 FBtr0083724 1 1 1 60 3R 14737817 14737836 GCTCAGTACATGACCATCTC 59 14737776 14737796 CTAGCTCCTTCAGCATTAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PKD FBgn0038603 FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592 3 4 4 203 3R 14131625 14132352 AGCAGCTCACTGAATATCC 59 14131440 14131458 CTTGTGCGTATTGTACTGG 58 NA DesignRelaxed Drosophila melanogaster 50 beat-IIb FBgn0038494 FBtr0083411 1 1 1 188 3R 13064759 13065208 AAGTTGTGGAATTTCCGGA 59 13059233 13059251 CAACCGTTCGAATGTACTG 58 NA Drosophila melanogaster 50 CG9624 FBgn0038213 FBtr0082897 1 1 1 60 3R 10054525 10054544 CTGAGAATGCCTTAAACCAG 58 10054484 10054502 AGAAAGTCCACCTGATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or88a FBgn0038203 FBtr0082890 2 1 1 84 3R 9936370 9936388 CAATATTGCCAGCGAACAC 59 9936435 9936510 CCAGCTGCATTATTTCAGTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14368 FBgn0038162 FBtr0082859 1 1 1 165 3R 9451183 9451201 TCAAGTCTTGTGTCTAGGC 58 9451036 9451054 CATCCTTCTCGTCCTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8476 FBgn0038127 FBtr0082781 3 1 1 60 3R 9045604 9045624 TTCTACCTATATGTAGCCGGA 59 9045564 9045583 TGATCACGTCCAATAGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14380 FBgn0038124 FBtr0082733 1 1 1 81 3R 9014573 9014591 AATTATTCCAGGACCCGTC 59 9014700 9014718 TAGAAGCGCAGTTAAACAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG7242 FBgn0040494 FBtr0082690 3 1 1 88 3R 8787956 8788448 CATGGAAAGCATTCACACG 59 8788500 8788518 GTACAGTGACACCCTTCAC 59 NA Nonspecific Drosophila melanogaster 50 CG34055 FBgn0054055 FBtr0100000 3 1 1 62 3R 8341044 8341062 AATCGACACCACAGTAACC 59 8341000 8341018 CCAAGATCTGGAGTTTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HisCl1 FBgn0037950 FBtr0082471,FBtr0082472,FBtr0082470 1 3 3 80 3R 7614292 7614373 GTACTCAACAGGTAACTTCAC 58 7614415 7614433 TAGGTGTGGAACAAATGGT 58 NA Drosophila melanogaster 50 Tsp86D FBgn0037848 FBtr0082288 3 1 1 208 3R 6695117 6695135 CATACTGGAGATGTCGCTG 59 6695307 6695382 TGAAGTACTCGTTCTTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12592 FBgn0037811 FBtr0082233 3 1 1 249 3R 6165648 6165666 TGAAGAAGGTAATTCAGCG 57 6165943 6165961 CTCATCGGAACTCTTTAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG3909 FBgn0027524 FBtr0082172 2 1 1 122 3R 5869964 5870036 TATGATGTAACCCACTCCG 58 5870122 5870140 TTTCACGCTGTTATCACTG 58 NA Drosophila melanogaster 50 Fps85D FBgn0000723 FBtr0082053,FBtr0082051,FBtr0082052,FBtr0082054 2 4 4 90 3R 5194239 5194257 GATGTGGGAGATCTTCTCC 58 5194104 5194186 CATACGATATCCCGTATCGA 58 NA Drosophila melanogaster 50 CG9740 FBgn0037669 FBtr0081984 3 1 1 60 3R 5083910 5083996 ACAGGCTGATTATCCATAGG 58 5083869 5083888 AATTCAGCGGTTAGATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10101 FBgn0037501 FBtr0081531 3 1 1 172 3R 3233943 3233961 AGCTTAACGGATAAGTGGG 59 3234097 3234175 AGAAAGTGGATGTTCTGGG 59 NA Drosophila melanogaster 50 rn FBgn0003263 FBtr0081594 1 1 2 71 3R 3102468 3102486 GGCAATGGCATATCATCCT 59 3101753 3102433 AATCTTGGTGTCCTTCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14610 FBgn0037477 FBtr0081609 2 1 1 60 3R 2969555 2969573 GAATGTCTCAGTGAGGTGG 59 2969513 2969532 GGGTCTCTGTGATAGATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1943 FBgn0037468 FBtr0081637,FBtr0081636,FBtr0081635 3 3 3 64 3R 2902726 2902744 CCAATATCTTCTCGGAGCC 59 2902771 2902790 GTTCTGTTGGTTGTACTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 djl FBgn0037463 FBtr0081631 3 1 1 86 3R 2886703 2886776 AAAGAAATTCTCAAGCCCG 58 2886824 2886844 CTTGATCACATGAATCACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 UbcD6 FBgn0004436 FBtr0078849 3 1 1 91 3R 776250 776269 GATGGTGGAATATGCTTGGA 59 776116 776196 CTCAGCAGTGACTGTATGG 59 NA Drosophila melanogaster 50 CG40298 FBgn0058298 FBtr0111169 1 1 1 60 3L 23720645 23720663 TTTAAATGCGCTACTGTGG 58 23720687 23720705 GCTTCGTTACGGAATACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33771 FBgn0053771 FBtr0091772 2 1 1 75 3L 22642565 22642639 AGTCAACTCTTTGTTACCG 57 22642677 22642696 TGTTAGCTATGGTTATCGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5104 FBgn0037009 FBtr0078209 3 1 1 195 3L 20514317 20514522 TCATTACGCAGATCAACGA 59 20514681 20514774 ATGAGAAAGCAGGTACTGG 58 NA Drosophila melanogaster 50 CG8004 FBgn0036920 FBtr0074915 2 1 1 66 3L 19921025 19921043 TCTACAAAGAGGTCACAGC 58 19920977 19920995 TTCTGCATGTGATTGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9368 FBgn0036890 FBtr0074942,FBtr0074943,FBtr0074944 3 3 3 261 3L 19595820 19595838 GATCTTCGATGCCATATGC 58 19596063 19596081 TTAGTCCATCAGTCGAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9619 FBgn0036862 FBtr0075014 2 1 1 127 3L 19278386 19278404 ATAGGGATGTCCTCATGTC 57 19278154 19278172 TTTATGATCGGCTCATCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG32204 FBgn0052204 FBtr0113429 2 1 1 81 3L 18923742 18923761 CGTACTGATATACTCGTGGC 59 18923240 18923700 TATTTGCACACCGTAGTAGAC 59 NA Drosophila melanogaster 50 Cat FBgn0000261 FBtr0075058 1 1 1 104 3L 18820346 18820461 CTACTTTGCTGAGGTGGAG 59 18820529 18820547 GAGTAGGAGAACAGACGAC 58 NA Drosophila melanogaster 50 Eip75B FBgn0000568 FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149 3 4 4 111 3L 17948399 17948417 GAGATGGATATCGTTGGCT 58 17948141 17948324 TGAGTATTCCGATCTGCTG 58 NA Drosophila melanogaster 50 NUCB1 FBgn0052190 FBtr0075171 3 1 1 67 3L 17792073 17792092 GGACAAGGTCTATCAGAGTG 59 17792025 17792043 TACGTTCCATTTCCTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Abl FBgn0000017 FBtr0112790,FBtr0075357 3 2 2 95 3L 16621830 16621848 GAGTATCTTCTCAGCTCCG 58 16621680 16621771 ACCCTCGTATCTCAAACTG 58 NA Drosophila melanogaster 50 CG5389 FBgn0036568 FBtr0075446 3 1 1 203 3L 16091482 16091656 TAGTGCTGGAGGTATTCCA 59 16091823 16091841 AGAAATCCGACTTGACCTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG6498 FBgn0036511 FBtr0075562 1 1 1 80 3L 15567175 15567262 GAGATGCAGCAGTACTCAG 59 15567305 15567324 ATAAGAGGAATCCAAAGGCG 59 NA Drosophila melanogaster 50 CG32847 FBgn0052847 FBtr0075639 1 1 1 60 3L 15114733 15114752 TACTTTCGTAATGGACACCA 58 15114772 15114793 GGTGTCTAGACATATGTTACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11552 FBgn0036465 FBtr0075669 1 1 1 60 3L 15035314 15035335 CGATAAGTACTTGGAATCATCG 58 15035275 15035293 ATAGAGCAGATTTAGGCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsc70Cb FBgn0026418 FBtr0075771,FBtr0075772,FBtr0075773 3 3 3 200 3L 14032908 14032927 GATGATATCGACGTCTCGTC 59 14033087 14033172 GTTAAAGACCTGCTCAATAAGC 59 NA Drosophila melanogaster 50 CG8750 FBgn0040812 FBtr0075802 3 1 1 97 3L 13835968 13835987 CTTAAGATTCCAAATCGGCG 59 13835890 13835909 AAAGGACCTAGTATCCTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ImpL1 FBgn0001256 FBtr0075842 2 1 2 175 3L 13375920 13376013 GTAGTTTGCATCGTAGCAG 58 13376151 13376170 GAAATTGGAGTGTTTCCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7600 FBgn0064766 FBtr0076165 3 1 1 141 3L 11205852 11205928 CATATCACAGGCTATGGACC 59 11206032 11206050 AATTCTCGGAATTGAGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6511 FBgn0035923 FBtr0076570 3 1 1 118 3L 8717225 8717301 GGGCTCAAGAGGAATACAG 59 8717383 8717401 CAGTTTCACATACAACGGC 59 NA Drosophila melanogaster 50 eIF4E-3 FBgn0035860 FBtr0076701 1 1 1 111 3L 8223296 8223371 TAAGCTATCCCTTTGGACG 58 8223446 8223464 CACCTGGTACTGGATTTCC 59 NA Drosophila melanogaster 50 CG32372 FBgn0052372 FBtr0076793 2 1 1 108 3L 7518496 7518514 ATTGGAACATCTCCAGGTG 59 7518584 7518665 CAACAAAGTCATTTCCAAGGG 59 NA Drosophila melanogaster 50 CG13293 FBgn0035677 FBtr0077050 3 1 1 139 3L 6080581 6080599 TGTCTACACCAAGTTGTGG 59 6080699 6080781 CGCTGGTTCTTAAGTAATAGTG 58 NA Drosophila melanogaster 50 CG5568 FBgn0035641 FBtr0077025 1 1 1 102 3L 5865429 5865498 TTTCTACCCGTGGATAGCT 59 5865564 5865582 TAGTCAAGCTAAACACGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15020 FBgn0035543 FBtr0073298 3 1 1 92 3L 4424893 4424976 GAGTTCAACATATCGAAGCTG 59 4425028 4425048 CAGCTGAATACAGTAATCCAC 58 NA Drosophila melanogaster 50 tipE FBgn0003710 FBtr0073220,FBtr0073219 2 2 2 120 3L 4191775 4191793 CCAACTCGGAGATCAACTC 59 4191877 4192200 CTCAAGTTTCCTTGCACTG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14989 FBgn0035495 FBtr0073207 1 1 1 171 3L 4090078 4090096 AAACACAATCCTGAGACCG 59 4090361 4090379 CTTCATCACCCTCATCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12605 FBgn0035481 FBtr0073166,FBtr0073167 3 2 3 286 3L 3961786 3961804 CAAGTCACCTCTCAAATCG 58 3959843 3959861 AAATCACCTTGCCATCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Ubi-p63E FBgn0003943 FBtr0073179,FBtr0073177,FBtr0073178 3 3 3 90 3L 3901649 3901668 AAGACAAGGAAGGAATTCCC 59 3901578 3901596 ATGTTGTAATCGGACAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32276 FBgn0047135 FBtr0073107,FBtr0073106 3 2 2 60 3L 3198409 3198429 AACGAAAGAGGGTCAATATCC 59 3198369 3198387 GACCACAAAGATGAACAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12011 FBgn0035257 FBtr0072764 1 1 1 104 3L 1694644 1694734 GCATTCTCTACGACTCCTG 59 1694802 1694820 ATTTCTTGAGGTGAAGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 n-syb FBgn0013342 FBtr0072816,FBtr0072819,FBtr0072818 2 3 5 178 3L 1636902 1636921 TGCATAGAGTACCTTCATCC 58 1635683 1635953 CCTGTTCCTTGTTCTTGTC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7879 FBgn0035235 FBtr0072827,FBtr0072826 1 2 2 77 3L 1562995 1563981 CTTTCATCGCTTTCAGCAC 59 1562936 1562957 CCTGGATCTCCATTAGTTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 5SrRNA:CR33404 FBgn0053404 FBtr0086396 1 1 1 62 2R 15634918 15634936 AATACATCGGTTCTCGTCC 59 15634874 15634892 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3356 FBgn0034989 FBtr0072262 3 1 1 81 2R 20088407 20088484 ATTCTTTATGGTAACCACGG 57 20088525 20088546 GTAGTGTTTCTCATAGTCTTCG 58 NA Drosophila melanogaster 50 CG17662 FBgn0034884 FBtr0072106 1 1 1 145 2R 19493670 19493688 AGTTCCTCATTACCTGCTG 58 19493491 19493561 GAAGAGACCCGAAATACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5398 FBgn0034882 FBtr0072071 3 1 1 258 2R 19490578 19490597 CTTTCCTTGGTTACTTCCTG 58 19490818 19490900 GTTAGTTGAATCCCTGCGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG9826 FBgn0034784 FBtr0071894 2 1 2 138 2R 18729521 18729540 ATTGGTAGTTCCCTGAACTC 59 18729641 18729740 GATTGTGCTTATCAGCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CycB FBgn0000405 FBtr0071913,FBtr0071914,FBtr0071912,FBtr0071911 2 4 4 85 2R 18693056 18693179 CACTAAAGTTACAGTCAAGTCC 58 18692992 18693010 ACTTCTTCGACAGATTGCT 58 NA Drosophila melanogaster 50 PpD5 FBgn0005778 FBtr0071806 3 1 1 60 2R 17929910 17929930 GGATTTGAATCGGGTATATGG 58 17929870 17929890 CAACTTGATGCTATATCGTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LBR FBgn0034657 FBtr0071711,FBtr0071712 3 2 3 109 2R 17608823 17609371 GGTTTCCGAGGTATCATCG 59 17609444 17609462 CGGAGCTTGTGTTAAATGC 59 NA Drosophila melanogaster 50 Obp56b FBgn0046880 FBtr0086480 1 1 1 96 2R 15586700 15586780 CTAAGCGAACTAGTAGCGG 59 15586622 15586640 CACTGGCAGCAATATTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7744 FBgn0034447 FBtr0086535 3 1 1 81 2R 15340706 15341059 CTAAAGGTTTACAGAGAACGAC 58 15341101 15341119 CGTGCAGGACTTTATTCAC 58 NA Drosophila melanogaster 50 CG11961 FBgn0034436 FBtr0086519,FBtr0086520 2 2 2 80 2R 15249503 15249524 CTTACTTCATCTACTTCTCGTG 58 15249565 15249644 AATTTCCGTTGGGTTTCTC 58 NA Drosophila melanogaster 50 CG15088 FBgn0034381 FBtr0086646,FBtr0086645 1 2 2 82 2R 14616063 14616081 GATTTCTACGGTGTCTCCT 58 14615934 14616018 CGATTAACTCCGTAAATCCA 57 NA Drosophila melanogaster 50 edl FBgn0023214 FBtr0086652 1 1 1 60 2R 14555462 14555480 GAACTGCCACAGAAATTCC 59 14555420 14555439 ACATATCGAGACTCATCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15605 FBgn0034196 FBtr0087002 3 1 1 61 2R 13014416 13014434 GTAAAGAGGGACAAGGCAG 59 13014373 13014393 AAATCCCTAAAGTATCGAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tef FBgn0086350 FBtr0087014 3 1 1 147 2R 12942843 12942862 ATCCGCAAGTTAAAGATGGA 59 12942657 12942675 TCGGGTTATCTGTGATTGC 59 NA DesignNoJunction Drosophila melanogaster 50 fidipidine FBgn0025519 FBtr0087185 2 1 1 93 2R 12151032 12151116 AAAGATGAGCTCGATCTGG 59 12150957 12150975 TAGGATCGAGATCAATGCG 59 NA Drosophila melanogaster 50 krimp FBgn0034098 FBtr0087189 1 1 1 60 2R 12127001 12127020 CATCATTACTCGGATCACCA 59 12126960 12126980 AAGATACGCATCATATCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mrj FBgn0034091 FBtr0113084 1 1 5 142 2R 12093318 12093419 GAAGTGAAGAAGGCATATCGA 59 12093067 12093085 TAGATTCTGCGCTTACGTG 59 NA Drosophila melanogaster 50 CG6145 FBgn0033853 FBtr0087687,FBtr0087685,FBtr0087686 1 3 3 60 2R 9426355 9426492 AGCTAGTGACCTTTAAAGATGG 59 9426316 9426335 CAGACGATAAAGTCAATCCG 58 NA DesignRelaxed Drosophila melanogaster 50 drk FBgn0004638 FBtr0087693,FBtr0087697,FBtr0087698,FBtr0087696,FBtr0087694,FBtr0087695 3 6 6 92 2R 9385227 9385305 GAATCACGACTGGTATTACG 58 9385154 9385172 CTGATGCGTATCAAGAAGG 57 NA Drosophila melanogaster 50 CG30038 FBgn0050038 FBtr0088057 3 1 1 122 2R 7784025 7784108 CAATCGAGATTTGTCGTACAG 59 7783923 7783942 TCATATTGTTGAACTGCACC 58 NA Drosophila melanogaster 50 CG9003 FBgn0033639 FBtr0113067,FBtr0113068,FBtr0088088,FBtr0113069 1 4 4 80 2R 7531791 7531810 CATTAATTTGCACTCGTGCT 59 7531671 7531750 ATCTCCATGAGATTTGGACAG 59 NA Drosophila melanogaster 50 Tapdelta FBgn0021795 FBtr0088153 2 1 1 289 2R 7258214 7258291 ACAACAAGTACCAGGTGAG 59 7257943 7257962 GAAGGCATCCTCTACTTAGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13227 FBgn0033589 FBtr0088107 2 1 1 190 2R 7122902 7122920 CTCTATTCAGCTGCTGGAC 59 7123074 7123092 GAGTTCTCTGGAAACCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12942 FBgn0033569 FBtr0088236 3 1 1 80 2R 6782935 6782953 TGACTCTAAACGACGATGG 59 6782994 6783068 CTATTCCATTGGATTTCAGCTG 59 NA Drosophila melanogaster 50 CG30020 FBgn0050020 FBtr0088235 3 1 1 96 2R 6775818 6775836 CCATTCACAAGCACAAGTG 59 6775895 6775988 AATTTGGGAAGATTGCTGTG 59 NA Drosophila melanogaster 50 CG12343 FBgn0033556 FBtr0088247 2 1 1 60 2R 6710464 6710484 GAAGAAGCGTAAAGACAATCC 59 6710424 6710442 TCTAGCTGTTTGAGCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trsn FBgn0033528 FBtr0088306 1 1 1 80 2R 6367090 6367173 GTACTACAGATACTCCGATCAC 59 6367031 6367049 GCCTCCAGGTAAATAACCA 58 NA Drosophila melanogaster 50 CG11777 FBgn0033527 FBtr0088273 3 1 1 81 2R 6356435 6356716 CCATTAAGCACACTGATCG 58 6356760 6356779 TAGGTAATGAAGAACTGGCT 58 NA Drosophila melanogaster 50 CG1776 FBgn0033441 FBtr0088497 1 1 1 81 2R 5608218 5608239 CAGAAGTTGTGAACTTTGACTG 59 5607468 5608176 CCTGAGATGAGCACATAGC 59 NA Drosophila melanogaster 50 CG33758 FBgn0053758 FBtr0091759 3 1 1 93 2R 5341208 5341227 TTGCTCGTAACAATAACGTG 58 5341083 5341154 TCAATTACCTTGAAGGGACAC 59 NA DesignNoJunction Drosophila melanogaster 50 ana FBgn0011746 FBtr0088559 3 1 1 81 2R 4963416 4963434 TTTAAGTCTCATCTGGCGA 58 4963903 4963921 TCTTCATGGAGTTGCTACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13749 FBgn0033353 FBtr0088655 3 1 1 61 2R 4821025 4821043 TAATCGACGATTCCATTGC 57 4821068 4821086 ATCATGTCCGTCGTATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14747 FBgn0033306 FBtr0088732 1 1 1 80 2R 4468410 4468540 CAAGGGAATAACAACCGAC 58 4468348 4468366 TTCATCCATGGGATAACCA 57 NA Drosophila melanogaster 50 Lcp3 FBgn0002534 FBtr0088743 2 1 1 290 2R 4323102 4323120 CTAATGTGGAGGTCAAGGA 58 4323374 4323392 TCACTTAGTTCTTGCTGGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Vps28 FBgn0021814 FBtr0088825 1 1 1 73 2R 3967245 3967263 TACAAGGTGGCCTTTAAGC 59 3967190 3967208 AGCCGGAATTTCTTAACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30382 FBgn0050382 FBtr0088894 2 1 1 250 2R 3718957 3719037 CTCTACCAAGTGGAGTACG 58 3718437 3718455 TACTTGTAGCGGAAGTTGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG7881 FBgn0033048 FBtr0086033 2 1 1 108 2R 1850680 1850698 CTTATTCTTGGCCATCGTC 58 1850528 1850609 GTTGTACTCAGGAAAGTCCA 59 NA Drosophila melanogaster 50 snoRNA:Me28S-C2645a FBgn0082938 FBtr0113556 1 1 1 60 2L 20647821 20647842 CCATGATGAAATCGTTAGATGG 59 20647860 20647881 CTACTATCGAGATGAATCAGTC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His2A:CG33859 FBgn0053859 FBtr0091863 1 1 1 60 2L 21528622 21528641 GAATTATTCCGCGTCATCTG 59 21528664 21528682 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34136 FBgn0083972 FBtr0110944 2 1 1 80 2L 21097208 21097226 CTGTCGTTTCCCTACTGTG 59 21097270 21098593 ATTGTTGGTGCTCATTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ppk13 FBgn0053508 FBtr0091448 1 1 1 84 2L 21087935 21087955 CCCAAGCTCAATATGTATTCG 58 21087734 21087889 GTATAAAGACCGTGGCCTC 59 NA Drosophila melanogaster 50 CG10664 FBgn0032833 FBtr0081300,FBtr0081301 3 2 2 130 2L 19959683 19959761 ACATCTTCGTGTACGATGAG 59 19959854 19959872 CTTGTTCTCGTAGTCCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 Lar FBgn0000464 FBtr0081260,FBtr0112800 2 2 2 80 2L 19729579 19729600 GCTATCAGTATTATGTCGTGGA 59 19729639 19729729 CATCCGTGACCTTAAATTCAC 59 NA Drosophila melanogaster 50 CG17549 FBgn0032774 FBtr0081221 2 1 3 80 2L 19388087 19388107 ATCGATCCGTATCTATTCCAC 58 19387924 19388046 ACCAGTTATAGCTTGTTGGT 58 NA Drosophila melanogaster 50 gammaTub37C FBgn0010097 FBtr0081228 3 1 1 73 2L 19185373 19185393 CCGTTCTCATAGACTTAGAGC 59 19185212 19185338 CTGGTTGTACAACTTGGAG 57 NA DesignRelaxed Drosophila melanogaster 50 CG10623 FBgn0032727 FBtr0081190 3 1 1 60 2L 18956717 18956735 AGGAACAGTACCTTAGCGA 59 18956675 18956693 CCCATGATCAGTGGAAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10600 FBgn0032717 FBtr0081120 2 1 1 107 2L 18838148 18838516 GGGAGAAGATTCCTTCCTC 58 18838059 18838077 GATCCTTCGACTTGAAGGA 58 NA Drosophila melanogaster 50 Grip71 FBgn0032705 FBtr0081099 2 1 1 91 2L 18710304 18710322 CAAAGTCTTTGTCCTCCAG 57 18710377 18710450 CTTAAGGTCTGTTGCAGTG 58 NA Drosophila melanogaster 50 Cyt-c-p FBgn0000409 FBtr0080889 1 1 1 98 2L 16722073 16722091 TGAGAAGGGAAAGAAGCTG 59 16722153 16722171 ATCAGACCATGCAGATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pkaap FBgn0040079 FBtr0080826 2 1 1 81 2L 16290138 16290157 TTCGCTGACTTTCTAAAGTC 57 16290199 16290288 GATGAGTGGTGGAATTATCTC 57 NA Drosophila melanogaster 50 CG12448 FBgn0028857 FBtr0080796,FBtr0080795 3 2 2 60 2L 15942014 15942032 TGCGAAAGGAACATATGCT 59 15942053 15942136 TTACTTAGCAGATCAGATTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18125 FBgn0028917 FBtr0080642 1 1 1 60 2L 14346189 14346207 CCCATCGATCTTCAAGGAG 59 14346147 14346168 CAGTTAATCCACAATAGTACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33640 FBgn0053640 FBtr0091617 1 1 1 66 2L 13528173 13528191 TAACTATGCGCAGTTCCTG 59 13528221 13528420 CTCGTCTATGTAGGTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bun FBgn0010460 FBtr0080378 1 1 6 167 2L 12482643 12482663 CAGTCGTCAATATGGATTTCG 59 12458211 12477120 ACTTGACCAGATCCATTGC 59 NA Drosophila melanogaster 50 CG12307 FBgn0032370 FBtr0080266 1 1 1 67 2L 11651627 11651645 CAGAGCTCTGTGAGTTGTC 59 11651578 11651596 ATCGCGAGATTGTTAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14070 FBgn0032313 FBtr0080177 2 1 1 60 2L 10900943 10900961 GGATACCGGAAGAGAAGTG 59 10900901 10900921 TCTTAATGATCCGGTAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6700 FBgn0032305 FBtr0080187 3 1 1 105 2L 10839999 10840072 CAGGATTTGACTGTCCAGG 59 10839912 10839930 ACTGATTGAACTCCTCGTG 59 NA Drosophila melanogaster 50 CG18302 FBgn0032266 FBtr0080095 1 1 1 81 2L 10535693 10535777 GACCATTAGTGTTTATTGCCAG 59 10535819 10535837 TTATGTATCAGGCTTCGCC 59 NA Drosophila melanogaster 50 CG33301 FBgn0053301 FBtr0079935 3 1 1 60 2L 10050133 10050151 CAAACCTGCTAACCAAGTG 58 10050175 10050193 GAATACGCCTTCTTGTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 zf30C FBgn0022720 FBtr0079865 2 1 1 259 2L 9761256 9761274 ACAAGGAACTGCTCTACTG 58 9761497 9761580 GTGCGTCTTGAGAATACCA 59 NA DesignRelaxed Drosophila melanogaster 50 Nckx30C FBgn0028704 FBtr0079926,FBtr0079928,FBtr0079927 3 3 3 140 2L 9733529 9742389 AACGTGGTATCAATGACAC 57 9733407 9733427 CCACAAACATATAGATCACCC 58 NA Drosophila melanogaster 50 CG9582 FBgn0032090 FBtr0079778 3 1 1 69 2L 9024655 9024673 AAGTGCAGGATTCAAGGAC 59 9024604 9024622 TAATCGTGCTTATGGTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sema-1a FBgn0011259 FBtr0110930,FBtr0079691 3 2 3 96 2L 8660491 8660509 CCTCTGTAGTCATCGAGGA 59 8660568 8660660 TCTTTGGGTTGATCGTACTG 59 NA Drosophila melanogaster 50 fos28F FBgn0013442 FBtr0079585 3 1 1 225 2L 8180885 8181062 CAAACCGTTCACATTTCGG 59 8181251 8181269 TATAGGAGCTCGTACCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12560 FBgn0031974 FBtr0079548 1 1 1 247 2L 8009190 8009268 CTTTGTTCTAACGCTACGT 57 8008863 8008881 AGTGCTGTAGACTTAAGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13791 FBgn0031923 FBtr0079521 2 1 1 68 2L 7578286 7578304 CAATTGCAATACCAGCGAC 59 7578236 7578254 CCTTAGTGGTTCTGTCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sip2 FBgn0031878 FBtr0079360,FBtr0079357,FBtr0079359,FBtr0079358 2 4 5 64 2L 6961828 6961911 CTTCCGAAATCAAGCATGTG 59 6961783 6961801 AATTTGAGGTACCTTCGGC 59 NA DesignNoJunction Drosophila melanogaster 50 Atac1 FBgn0031876 FBtr0079362 3 1 1 62 2L 6959506 6959524 AGCGATATGCTCCTTATGC 59 6959462 6959480 ATCCATGTACTCGGATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32829 FBgn0052829 FBtr0079370 3 1 1 70 2L 6916036 6916054 AAGAAGCACAAGAAGGGTC 59 6915984 6916002 TCCTTGATGTACTCGTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nhe3 FBgn0028703 FBtr0112942,FBtr0079318,FBtr0079317 1 3 3 80 2L 6682192 6682211 GACGTAAACCTATATGCGCT 59 6682075 6682149 TTGAATGGCTCCACTAAGG 59 NA Drosophila melanogaster 50 Oatp26F FBgn0051634 FBtr0079327 3 1 1 81 2L 6627591 6628523 TTACTTGGGCATCTACTACAC 59 6627530 6627549 ATAGATGAGCAGCAGTTGTC 59 NA Drosophila melanogaster 50 Oatp26F FBgn0051634 FBtr0079327 1 1 1 80 2L 6627591 6628523 TTACTTGGGCATCTACTACAC 59 6627531 6627549 TAGATGAGCAGCAGTTGTC 59 NA Drosophila melanogaster 50 CG31643 FBgn0051643 FBtr0079182 1 1 1 103 2L 6040770 6040790 GGCTACCAAATAGACTTTGTG 58 6040855 6040932 ATTGCCACTTTGGTTATGC 58 NA Drosophila melanogaster 50 CG3058 FBgn0031601 FBtr0077435 2 1 1 73 2L 4403403 4403521 GACCGAGTAGTTGTAATACG 57 4403557 4403575 CTGTACATGACCTCATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aph-1 FBgn0031458 FBtr0077716 3 1 1 61 2L 2766696 2766773 CTGGCTGATATGAGTGGTC 59 2766797 2766816 ACGAAGAATAGCTCAGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33124 FBgn0053124 FBtr0113449 2 1 1 80 2L 2208538 2208618 CTGATAGCGAGTTTCATTTCG 59 2208478 2208496 CAGGGAATATTGGGTTCCA 58 NA Drosophila melanogaster 50 CG7337 FBgn0031374 FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012 2 5 5 130 2L 1937464 1937482 CACAATACGGAGAATGGGA 59 1937575 1938518 CTATGGCCTACATTCTCCAG 59 NA Drosophila melanogaster 50 a5 FBgn0011294 FBtr0077922 2 1 1 60 2L 1329313 1329391 GAGTTACTTAGGATCAAGTACG 57 1329412 1329430 GAGTATAGGTCTTGCCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13946 FBgn0040725 FBtr0078004 2 1 1 77 2L 776761 776779 GAACTCTCCAACAGTACCA 58 776820 776838 TGATGAGGAAACGTCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0196 FBgn0027279 FBtr0077355,FBtr0077356,FBtr0112508,FBtr0077357,FBtr0077354 2 5 5 81 X 21898312 21898331 TATTTCGGTGCATGTATCCA 59 21898374 21898508 GAGTGCAATCTTAGCAAACC 59 NA Drosophila melanogaster 50 CG7990 FBgn0030997 FBtr0074694 2 1 2 104 X 19093490 19093870 ACTATGGCCAGATCAACAC 59 19093404 19093422 ACAGTTCATGGAAGCTAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9992 FBgn0030744 FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309 1 5 5 93 X 16277004 16277022 AGTCCTACTTCCGAGACTG 59 16276867 16276947 CAAAGTTGTGCAAGTCCTG 59 NA Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 2 7 7 80 X 16269992 16270010 ATCACCATGTATCGAAGCG 59 16270054 16270134 TCCATTTCACCTCGTTCTC 59 NA Drosophila melanogaster 50 CG9503 FBgn0030598 FBtr0073974 1 1 1 122 X 14815296 14815314 AGCTGTCCAAGATTGACTG 59 14815076 14815094 AGTTAAGAACAGAGCTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15721 FBgn0030438 FBtr0073715 3 1 1 160 X 12867627 12867645 ATACAACGTTTGCAACGAC 59 12867768 12868494 GCCAATCATTCTGCTTTCTG 59 NA Drosophila melanogaster 50 Klp10A FBgn0030268 FBtr0073478,FBtr0073475,FBtr0073477,FBtr0073476,FBtr0073479 2 5 5 152 X 11027593 11027611 TAATGGAAAGGTGCAGGAC 59 11027383 11027477 AGAAGATCGAAGACCTTGC 59 NA Drosophila melanogaster 50 l(1)G0232 FBgn0028341 FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407 3 6 6 85 X 9524046 9524066 GCCGTCGGATTATATTAATGC 59 9523916 9524001 TCTTTGGTAATGGACCTTGAG 59 NA Drosophila melanogaster 50 CG34449 FBgn0085478 FBtr0112753 1 1 3 82 X 9227647 9230967 TTACAGTAAGCTATCGCCC 58 9227583 9227601 GTTCACAGTCCTGACTCTG 59 NA Drosophila melanogaster 50 Pat1 FBgn0029878 FBtr0070945 3 1 1 118 X 6489264 6489355 CATTGATATAAGCCTGCGTC 58 6489433 6489454 GCGCATACTTCAAATACTTCTC 59 NA Drosophila melanogaster 50 CG15473 FBgn0029719 FBtr0070689 3 1 1 125 X 4547952 4548047 TGGAAATCTAAGCCAGCTG 59 4547845 4547863 GTCATAATATCGCCGAAGC 58 NA DesignRelaxed Drosophila melanogaster 50 Actn FBgn0000667 FBtr0070344 1 1 3 80 X 1922776 1924258 GGATCCAGATGATCTCCAG 58 1922714 1922732 AAGCAGTGATAGTACGAGG 58 NA Drosophila melanogaster 50 CG40196 FBgn0058196 FBtr0113830,FBtr0113829,FBtr0113831 2 3 3 120 U 1092307 1092325 CAGATCTAAGTTGCGATCC 57 1092152 1092224 TAAAGAGAATTCACTGCTCG 57 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156 2 9 10 80 4 103363 106347 CCTAAGATGGGCTTAACTCG 59 106387 106408 CATATCTGAACTTAGCATTGGG 58 NA Drosophila melanogaster 50 CG7816 FBgn0039714 FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921 1 6 6 80 3R 25690544 25690624 GGGCGATAATCAAGATCCT 58 25690482 25690501 ATCGTGAAGATCAGTATGCC 59 NA Drosophila melanogaster 50 Trc8 FBgn0039668 FBtr0085431,FBtr0085430,FBtr0085432,FBtr0085429 1 4 4 92 3R 25325968 25326046 GCTATCAGGAAATGTATTCCG 58 25325896 25325914 AACGATCCTGAACGTACAG 59 NA Drosophila melanogaster 50 CG1647 FBgn0039602 FBtr0085326 1 1 1 184 3R 24646212 24646230 GAAGATCTACGAGCTGGTG 59 24646431 24646519 GATCAATTAATCTTGCGGGC 59 NA Drosophila melanogaster 50 CG14259 FBgn0039483 FBtr0085104 3 1 1 80 3R 22920754 22920772 CAATCTGACTGACCTGGTG 59 22920939 22920958 CAGCTAAAGTCTTTCTTGCT 58 NA DesignNoJunction Drosophila melanogaster 50 5PtaseI FBgn0051107 FBtr0084793 1 1 1 60 3R 20868261 20868281 ACTGAAATACTGTCCCTACTC 58 20868221 20868239 TAACTTTGAACTGGTCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 1 5 6 80 3R 20045369 20045388 ATGAACATCTACAACGAACC 57 20025660 20045326 TGGATTCACGGTAAATGAC 57 NA Drosophila melanogaster 50 Pk92B FBgn0014006 FBtr0083818,FBtr0083819 2 2 2 81 3R 15708427 15708448 GATATGATCCTGGAGATGACTG 59 15708487 15708574 CGTACTCGTACTCGATATTAGC 59 NA Drosophila melanogaster 50 CG6184 FBgn0038725 FBtr0083802,FBtr0083800,FBtr0083801 2 3 3 88 3R 15479276 15479357 CCAAGGAATTTAAGGACTACG 58 15479208 15479226 GTACACCAGTTCGTACTCC 59 NA Drosophila melanogaster 50 Dad FBgn0020493 FBtr0100160,FBtr0083394,FBtr0083393 1 3 3 81 3R 12894608 12894696 CTTTGAAACCAATAGGGCTG 59 12894740 12894758 AATGCTGAAGTAGTCGACG 59 NA Drosophila melanogaster 50 CG7518 FBgn0038108 FBtr0082697,FBtr0082696 3 2 2 114 3R 8825634 8825652 GATTACGAGCGGTTACCTC 59 8825729 8825805 GTTAGCCATTAATATGGCGC 59 NA Drosophila melanogaster 50 SelR FBgn0037847 FBtr0082296,FBtr0082294,FBtr0082292 3 3 6 166 3R 6692389 6692408 CAACAAACACTACGAGAAGG 58 6689539 6692261 GTATACGTTCTGGTATGCTG 57 NA Drosophila melanogaster 50 CG2702 FBgn0037540 FBtr0081786 2 1 1 137 3R 3840564 3840582 CGTTGATAGGAATACGGCA 59 3840683 3840761 GTAGTGAAGGGTTCGTGAC 59 NA Drosophila melanogaster 50 CG33324 FBgn0053324 FBtr0081727 2 1 1 72 3R 2272958 2272976 TTGGATGCTCCCAATACTG 59 2273012 2273030 TTTCCTTGGGTGACTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11373 FBgn0040679 FBtr0078657 2 1 1 128 3R 1786221 1786523 GCACACGATAGGATTTGGA 59 1786060 1786079 TTAGACGTCAAAGAATCCGT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG2051 FBgn0037376 FBtr0078670,FBtr0078669 1 2 3 80 3R 1613835 1613948 GTGTTACTTCTTGAGCTACG 58 1613774 1613792 TATACGGTGGTGTAACCAG 58 NA Drosophila melanogaster 50 CG31547 FBgn0051547 FBtr0078765,FBtr0078764 3 2 2 143 3R 1317155 1317277 AATATAATACCGGTGCGGG 59 1317030 1317048 TGTCAACGCATTTATTCCG 58 NA Drosophila melanogaster 50 CG12000 FBgn0037314 FBtr0078805,FBtr0078806 3 2 2 77 3R 1183098 1183116 CAAGGACAGGGACTTTACC 59 1182968 1182986 GTATCGCGGTAGTAAAGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG12163 FBgn0037303 FBtr0078823 3 1 2 163 3R 1065334 1069571 AACGAGAAATATGTCCATCG 57 1064896 1064915 GAGGCTGAGTATACTTTCAC 57 NA Drosophila melanogaster 50 CG7140 FBgn0037147 FBtr0114546 3 1 1 60 3L 22020820 22020838 GAACCGCATAATAGTGGAG 57 22020778 22020796 TTGAAAGGCCTTGTAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 chb FBgn0021760 FBtr0089462,FBtr0089460,FBtr0089461 1 3 3 60 3L 21172075 21172093 CAATGTGAACGATGTGACC 59 21172116 21172135 GCTAGATTCGAAAGATTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234 1 10 10 72 3L 20826943 20826961 CAAATGCGTCAAACTGGAC 59 20827129 20827147 GTTGCGTTTGAGTATGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14187 FBgn0036938 FBtr0074868 3 1 1 61 3L 20105625 20105645 AAGGACTTCTTCATGTACCTG 59 20105584 20105602 AATCCTGACATCGTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075008 2 1 11 85 3L 19297287 19297305 TAACCCTGACTGTTCTCGA 59 19297154 19297172 GGTGATCTTGCTATTGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6902 FBgn0035899 FBtr0076657 1 1 1 60 3L 8484483 8484501 TCTGTGCGTGTTATTTGAC 58 8484441 8484459 TCTCGCAGACATGATATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nmo FBgn0011817 FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758 2 6 6 142 3L 8040250 8040352 GTCTTCGATCCGGATAAGC 59 8040457 8040476 AAATCAGCCGTATACTGACG 59 NA Drosophila melanogaster 50 CG15011 FBgn0035518 FBtr0073244 2 1 1 105 3L 4257248 4257321 AACTCTGTCGCATAACTCC 59 4257161 4257179 CTGGTGTCATTGGGTAGAC 59 NA Drosophila melanogaster 50 CG10339 FBgn0034972 FBtr0072288 1 1 1 60 2R 19966351 19966370 AAAGTTCTACATCACACCCA 58 19966310 19966328 CACCTGGCTATCGTTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16739 FBgn0034505 FBtr0086286 2 1 1 62 2R 16229792 16229810 CTGTACTTCACCAATTGGC 58 16229836 16229854 ATAGAGCAATCCCAAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spin FBgn0086676 FBtr0089592,FBtr0089591 1 2 5 80 2R 12020077 12020098 GACCTTCCTTCATCTATCTAGG 58 12020138 12020350 CAAACTTGTACGAGATGTCG 58 NA Drosophila melanogaster 50 CG34365 FBgn0085394 FBtr0112590,FBtr0112587 3 2 4 90 2R 11306982 11307000 AGGATTACAGTCACAGCAG 58 11307054 11308196 TCGGAGAAATCGGATACTG 58 NA Drosophila melanogaster 50 Mdr49 FBgn0004512 FBtr0087801 3 1 1 81 2R 8832634 8832654 TGACTTTCAGCTTAAGGAAGG 59 8832508 8832593 TCTGGTTGAGTATCTGAACAG 59 NA Drosophila melanogaster 50 CG13226 FBgn0033594 FBtr0088108 2 1 1 60 2R 7132093 7132115 GTTATAACTATGGATACCCGGTC 59 7132134 7132153 CTGGGTCTGTAGTAGTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 3 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421093 TAGTAAGGTAGCAAAGTAGGGA 59 NA Drosophila melanogaster 50 CG1667 FBgn0033453 FBtr0088479 2 1 1 85 2R 5731846 5731865 GCTACCTCAAACTTTCACTG 58 5731910 5731983 GGTAACATTATTCTTGTCCTCG 58 NA Drosophila melanogaster 50 gcl FBgn0005695 FBtr0088710 1 1 1 91 2R 4615200 4615218 ATTATACCCAAGGAGTGGC 58 4615273 4615361 TGAGGACTACAATCCTCCT 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111090,FBtr0089020 1 2 60 161 2R 3249350 3249368 AAAGTACCTGGTATTGCCC 59 3238787 3249225 TTAAATCCCACAGGCTCTG 59 NA Drosophila melanogaster 50 vlc FBgn0010633 FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039 1 4 4 105 2R 1591797 1591817 CCAGATATCTCCGAAGATACC 58 1591884 1591954 TATTGTGGCAAAGACCCTC 59 NA Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445 3 8 8 80 2L 20877196 20877215 TCTGCAAGAAGATACCAGTG 59 20877070 20877156 AAATATACTGGGTACTCAGTCC 58 NA Drosophila melanogaster 50 drl FBgn0015380 FBtr0081195 2 1 1 80 2L 19207435 19207454 ATGAGATGGAGCACTATCTC 58 19207497 19207639 CCATAATGGTGAAGAGCTC 57 NA Drosophila melanogaster 50 ppk FBgn0020258 FBtr0080638 3 1 1 132 2L 14379783 14379858 CAGGGCTATAAGGTCTTTCTC 59 14379671 14379689 GCAAATTGTCAGTGGACAC 59 NA Drosophila melanogaster 50 Nup107 FBgn0027868 FBtr0080121 1 1 1 60 2L 10733517 10733535 GAAGTGATGTTCAAGTCGG 58 10733475 10733494 TGGATATTTCATCTGCCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34183 FBgn0085212 FBtr0112376 3 1 1 107 2L 9890438 9890456 TCAGACATAGTGGATGAGC 58 9890286 9890304 TTTGGAAGCGGAGATACTG 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)05714 FBgn0010607 FBtr0079050,FBtr0079051 1 2 2 60 2L 4970752 4970772 GGTGAACTTGTCAAAGATGAG 59 4970712 4970732 CTTTGGGTGAAATTATGGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3558 FBgn0025681 FBtr0077645,FBtr0077644 1 2 2 80 2L 2996428 2996512 AAGCTTAGGTCCCTTTCTC 58 2996555 2996574 AAGTGGAGATTGACGTACAG 59 NA Drosophila melanogaster 50 aph-1 FBgn0031458 FBtr0077716 2 1 1 60 2L 2766906 2766924 TCCACATAGGCTATGTGGT 59 2766947 2766966 GCATTGAGCAGAGTTATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eno FBgn0000579 FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905 1 4 5 83 2L 1727657 1727675 TAAATTTGTGCAGATCCGC 58 1726602 1726620 GAGTCGTAGATTTGACGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3164 FBgn0025683 FBtr0078153,FBtr0078155,FBtr0100379,FBtr0078154 1 4 4 80 2L 123790 123872 TATTACGATCCTATCATTCCCG 59 123731 123750 TAGGACTTTAGCGAGTACCA 59 NA Drosophila melanogaster 50 CG1314 FBgn0031134 FBtr0077286 3 1 1 60 X 20739335 20739356 CATATCGCCTAATCCTAATGAG 58 20739296 20739316 CGCAAGTTCTATTTCGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Frq1 FBgn0030897 FBtr0074545,FBtr0100239 2 2 2 149 X 18055313 18061670 ACGGACACATACTTCACAG 59 18062480 18062498 GAGCGATGCGAATTTACTG 59 NA Drosophila melanogaster 50 CG33173 FBgn0053173 FBtr0074093 1 1 1 82 X 15671322 15671400 GGATAGTGATCCGGATAGC 58 15671446 15671464 CATGGATCCAGGTGTTCTC 59 NA Drosophila melanogaster 50 Rbp1-like FBgn0030479 FBtr0073790 1 1 1 161 X 13278471 13278489 GTGTCGAAATGTCATCAGG 58 13275072 13278346 GTGATCTATAGCGTCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2861 FBgn0029728 FBtr0070732 3 1 2 89 X 4695260 4695278 TACCTCTAGAAACACCCAC 57 4694585 4695207 TAAAGAGCGTACCTAGTGC 58 NA Drosophila melanogaster 50 usp FBgn0003964 FBtr0070346 3 1 1 77 X 1933764 1933782 ATATTGTCGGAGCTGAGTG 59 1933705 1933723 TATGATGGCCTTCAAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14631 FBgn0029552 FBtr0070172 3 1 1 112 X 906252 906270 CTGGATACAGCTTCATTCG 57 906345 906364 ATTATTCATCCGGTCACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NfI FBgn0042696 FBtr0089141 1 1 1 80 4 296250 296271 ACTTTAAGAGGCTGTATGATCG 59 294528 296210 AGGGTGAAATTCATCCTGTC 59 NA Drosophila melanogaster 50 CG3509 FBgn0038252 FBtr0082969 2 1 1 60 3R 10489500 10489518 ATAATCTCGGAGCTGATCG 58 10489542 10489560 AGTTTCGACCCATCATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6753 FBgn0038070 FBtr0082669 1 1 1 60 3R 8467005 8467280 CTATGCCTCATCGGATGTG 59 8466963 8466981 AAGGAGGTAGGCTAAGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Art1 FBgn0037834 FBtr0082304 3 1 1 103 3R 6613266 6613284 TAATCACGGTTGTCAAGGG 59 6613094 6613199 GTAGAACAGGCAGTAACCC 59 NA Drosophila melanogaster 50 CG11872 FBgn0037806 FBtr0082229 1 1 1 217 3R 6132865 6132883 AATGGTAGTCTGCCTACAG 58 6133219 6133237 TAGCAGAAGATGCAGAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2616 FBgn0037512 FBtr0081738 2 1 1 63 3R 3548886 3548904 CCTCCAGATTTACGAGAGC 59 3548931 3549428 ATCCCTGATTTCAAGGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Snap25 FBgn0011288 FBtr0111143,FBtr0111142 2 2 2 81 3L 24251668 24251687 AATATGGCATTGGATATGGG 57 24251731 24290793 CATTAGATTCACCCTTCCG 57 NA Drosophila melanogaster 50 Mkp3 FBgn0036844 FBtr0075035,FBtr0075036 1 2 2 60 3L 19062619 19062638 CACTACTCACAAGATTTGGC 58 19062374 19062596 GCGCTTCCTCTATAAACTG 57 NA DesignRelaxed Drosophila melanogaster 50 stv FBgn0086708 FBtr0075806,FBtr0113425,FBtr0075808,FBtr0075809,FBtr0075807 3 5 5 80 3L 13475399 13475417 CTGCTTAAGCTAGACACCA 58 13475460 13475544 CTGAATGCATTTGATAGCCT 58 NA Nonspecific Drosophila melanogaster 50 CG32112 FBgn0052112 FBtr0075917,FBtr0075915,FBtr0075916 2 3 3 90 3L 12737833 12737915 CAGAAGCTATTTAGATCCTGC 58 12737967 12737985 TATCACATTTCAGGCCCTC 59 NA Drosophila melanogaster 50 mfr FBgn0035935 FBtr0076566 3 1 1 82 3L 8904067 8904134 ATCGCGTTTAATGGAACTC 58 8904003 8904022 CGACCAACATAGATCATAGG 57 NA Drosophila melanogaster 50 CG17352 FBgn0035880 FBtr0076675,FBtr0076676,FBtr0100664,FBtr0076674 2 4 5 78 3L 8347400 8347418 CTACTACATTCGACTGCGT 59 8347282 8347359 ATTCAAGTAGTTGAACACGC 58 NA DesignNoJunction Drosophila melanogaster 50 Cpr65Ax1 FBgn0086900 FBtr0112465 1 1 1 121 3L 6141022 6141040 TATGAAATTCGCCATCGTC 57 6140851 6140938 TGGTTTCAACTGCATATGAG 58 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG1275 FBgn0035321 FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906 2 4 4 69 3L 2253685 2253787 GTATGGCAACTCCATTCTG 58 2253634 2253652 GTGGGTAAGCTTCAGAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 Ipk1 FBgn0050295 FBtr0113368,FBtr0071515 1 2 2 110 2R 16764119 16764771 TTTCCCGGTGAAATTATGGT 59 16765150 16765168 CTTCTGGCTCTGATTGGAG 59 NA Drosophila melanogaster 50 CG9001 FBgn0034175 FBtr0087060 1 1 1 99 2R 12887566 12887586 GATGATCCACTAGCAATACTC 57 12887434 12887505 TGTAGGCCACTTGTATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30156 FBgn0050156 FBtr0086184 1 1 1 80 2R 2869299 2869319 AACTGGAAGTAGAAATCGAGG 59 2869182 2869257 GATTATCCCTCCAACTCCG 59 NA Drosophila melanogaster 50 vlc FBgn0010633 FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039 2 4 4 106 2R 1591797 1591817 CCAGATATCTCCGAAGATACC 58 1591885 1591955 TTATTGTGGCAAAGACCCT 59 NA Drosophila melanogaster 50 CG10641 FBgn0032731 FBtr0081185 1 1 1 76 2L 18986729 18986747 AAGTGGTCAACGTCTACAC 59 18978769 18986690 TGTATTGAAGGTCTTCTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31751 FBgn0086909 FBtr0081092,FBtr0081093 3 2 2 76 2L 18682373 18682446 GATGCTGCTTTACTTGGGA 59 18682483 18682504 CAGAGTAATACTTTCCTGTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5693 FBgn0040989 FBtr0081026 2 1 1 256 2L 18006796 18006814 TTAATCCGGGCTACATTGG 59 18007034 18007052 ACATCTCCAAAGGACTCCT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 chif FBgn0000307 FBtr0114469,FBtr0080838,FBtr0080839 2 3 3 66 2L 16352002 16352020 CATTTGCCACTAGATGCAC 59 16351954 16351974 CTGATATGTTCCTATAGCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PRL-1 FBgn0024734 FBtr0080857,FBtr0080856 3 2 2 60 2L 16248748 16248831 GGAGCTAAAGAAGAACAATGTC 59 16248709 16248729 GGTATTATAGCTAGGTTCGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG6614 FBgn0032369 FBtr0080267 1 1 1 80 2L 11645651 11645670 TAATATCTGTTTGCCTGCCA 59 11645535 11645609 AGACGATTGAGATGGTACAG 58 NA Drosophila melanogaster 50 cdc14 FBgn0031952 FBtr0079492 2 1 1 81 2L 7806708 7806728 AAGATAGTTCACTACACCTCC 58 7806514 7806668 GGTAGATTATTGCATACGAACC 59 NA Drosophila melanogaster 50 mio FBgn0031399 FBtr0077835 2 1 1 81 2L 2219093 2219168 GATATGCTACAGGAGTGAGC 59 2219212 2219230 TATAAAGCGATCCAGCTCC 58 NA Drosophila melanogaster 50 tRNA:CR31382 FBgn0051382 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR32123:Psi FBgn0052123 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR32357 FBgn0052357 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG12061 FBgn0040031 FBtr0113683,FBtr0113682 2 2 3 116 XHet 22997 23088 TACTCAACCGACCAAACTG 59 23168 23186 GCCTCATACCACATAACCA 59 NA Drosophila melanogaster 50 CR34311 FBgn0085340 FBtr0112509 2 1 1 60 X 20254970 20254988 ATTCAATCAGTGGATGGAC 57 20254928 20254949 CACTATATTGGAAGGTAAGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 FucTC FBgn0044872 FBtr0111136 2 1 1 76 X 22411742 22411760 GGACATTTACGGAAACTGC 59 22411147 22411165 AGTCAGTGTCCAACATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34019 FBgn0054019 FBtr0100074 2 1 1 98 X 21296900 21296918 TTTCTCCGAATTTCTCCAC 57 21296672 21296838 AATCATTTCACGTGAGGAG 57 NA Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210 2 5 8 86 X 21247686 21250626 ACATGACGCTTATGAAATGG 58 21250675 21250693 CAAAGTGGCCATAGAAGGT 59 NA Drosophila melanogaster 50 sol FBgn0003464 FBtr0089677,FBtr0089679 2 2 4 194 X 21223907 21223925 GCGGAAGTACAACTTTACC 58 21224083 21225131 GATCATGCATATGCTGCTG 59 NA InUTR Drosophila melanogaster 50 CG1532 FBgn0031143 FBtr0077268 1 1 1 64 X 20898775 20898793 TAACTATGGAGTGAGCAGC 58 20898013 20898031 CCTTGGAGTGTATGGTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 hydra FBgn0031128 FBtr0077294,FBtr0077295 2 2 2 94 X 20542568 20542708 CCTTAAAGTAGAAGTCGTGGT 59 20542494 20542513 TATGGGTATGATTGGGTTGG 59 NA Drosophila melanogaster 50 CG11943 FBgn0031078 FBtr0074798,FBtr0074799 2 2 2 80 X 19747834 19747916 GATCTGGTCTATAGCACGC 59 19747959 19747978 CTTGGAGTTCATGAAGTCGA 59 NA Drosophila melanogaster 50 CG11943 FBgn0031078 FBtr0074798,FBtr0074799 3 2 2 81 X 19747833 19747915 GGATCTGGTCTATAGCACG 59 19747960 19747978 CTTGGAGTTCATGAAGTCG 58 NA Drosophila melanogaster 50 Cdc42 FBgn0010341 FBtr0074751,FBtr0074752 1 2 2 63 X 19592047 19592066 GCTCATCTCGTATACAACCA 59 19592092 19592110 ATAGTTGTCGAACACCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33253 FBgn0030992 FBtr0074668 3 1 1 251 X 19079999 19080017 TTACTGTGACGGTAGATGC 59 19080232 19080321 ATACGTCCTTGATCTCCAC 58 NA DesignRelaxed Drosophila melanogaster 50 Cyp18a1 FBgn0010383 FBtr0074609,FBtr0074610 2 2 2 83 X 18584393 18584411 CTTCGATGGCAAGAATCAC 58 18584225 18584243 GTGGTCTTGATGGTTTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 Bx FBgn0000242 FBtr0074598,FBtr0074597,FBtr0074599 3 3 3 179 X 18461161 18461553 GACTACTTGAGATTGTTTGGC 59 18464621 18464639 TATCTTGTTCTCGCACAGG 59 NA Drosophila melanogaster 50 CG15048 FBgn0030935 FBtr0074595 1 1 1 63 X 18415013 18415031 AACATCGAGCTTAATCCCG 59 18415058 18415076 TAACCTTGAAACCCACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-his FBgn0027087 FBtr0074594 2 1 2 100 X 18412108 18412868 ATGAGAATTGAAGTGCTGAC 58 18412929 18412949 AAGTCATACCTCATCGATAGG 58 NA Drosophila melanogaster 50 CG15044 FBgn0030928 FBtr0074627 1 1 1 64 X 18385667 18385685 TGTGAACCACTACGATGAC 59 18385621 18385639 GATAGCTCATGAGCACCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wupA FBgn0004028 FBtr0074526,FBtr0074523 3 2 7 80 X 18004585 18004603 ACGCGTATACAGTTTGGAG 59 18000951 18004543 TTGAGATCGTTGATCTCTTGG 59 NA Drosophila melanogaster 50 Taf8 FBgn0022724 FBtr0074514 2 1 1 62 X 17996728 17996802 GTTTCCTTTAATTGCCTGCA 59 17996827 17996845 TCTGTGGGATTTAAAGCGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG8915 FBgn0030833 FBtr0074447 3 1 1 124 X 17138054 17138072 CAGGATCGTGGTAAGTCAG 59 17137887 17137966 TGCATTGTCTATTCATGCG 58 NA Drosophila melanogaster 50 CG32571 FBgn0052571 FBtr0074325 3 1 1 145 X 16625902 16625921 TGTCCAAGAAGTCTAATGCC 59 16626028 16626153 ATCATAGTTGGCCTGAATGG 59 NA Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 2 7 7 80 X 16269992 16270010 ATCACCATGTATCGAAGCG 59 16270054 16270134 TCCATTTCACCTCGTTCTC 59 NA Drosophila melanogaster 50 Dsp1 FBgn0011764 FBtr0089259,FBtr0089263,FBtr0089261,FBtr0089262,FBtr0089260 1 5 5 66 X 16230990 16231008 ATGAGACGGTGATATTCGC 59 16231038 16231132 TTGTCCACCATTGTCTTCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG33251 FBgn0053251 FBtr0074223 1 1 1 60 X 16205781 16205801 CGTCTAGAACCACTTCTAGAG 59 16205823 16205841 CGAGAAGTGGATCTAGTCG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3632 FBgn0030735 FBtr0112988,FBtr0112990,FBtr0112991,FBtr0112989 1 4 4 92 X 16195705 16195724 CTATATCCTGTCCAGATGGC 59 16195779 16195858 TTTCCTCACGTAGCTTGTG 59 NA Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 3 9 9 111 X 15788792 15788878 AGTTACCGAATATGGCGAG 59 15788952 15788971 TTTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 Myb FBgn0002914 FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169 1 4 5 82 X 15749875 15749893 GGTCTATAATCGCGTTGGA 59 15749747 15749829 GTCCAAGTTGACTCTTGTG 58 NA Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 2 7 7 82 X 15717700 15717788 GATCCATTGCTTGAGACTG 58 15717832 15717852 TCGTAGAGATCTTTAAGTCCC 58 NA Drosophila melanogaster 50 PGRP-LE FBgn0030695 FBtr0074183 3 1 1 132 X 15696001 15696020 CTGCCTGTTAAATATGTGGT 57 15695601 15695619 TGTACGCAATGTCATTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 l(1)G0168 FBgn0027287 FBtr0074042 2 1 2 249 X 15381365 15381383 GACTTGGAGTATGAGGGAC 58 15381661 15397628 GCTCTTCATTCTGCAACTG 59 NA DesignRelaxed Drosophila melanogaster 50 rab3-GEF FBgn0030613 FBtr0073993 1 1 2 90 X 14989268 14991682 CTAAACTCCTTGAGACTTCCC 59 14991734 14991752 AACTAATCGTTCCTTGGGC 59 NA Drosophila melanogaster 50 CG14414 FBgn0030571 FBtr0073931,FBtr0073930,FBtr0073932 3 3 3 220 X 14475704 14475797 ATATGATGAAACGCAGAAGC 58 14475980 14475998 CGCGATCCTTGTTAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 dmrt11E FBgn0030477 FBtr0073768 2 1 1 101 X 13263266 13264044 CATGGAAGAATACAAACAGCG 59 13264107 13264125 ATGACATGGTTCAGTTCCG 59 NA Drosophila melanogaster 50 HDAC4 FBgn0041210 FBtr0100425,FBtr0073797 3 2 3 149 X 13159366 13159384 GAAGACGATAGCCATACAG 57 13159061 13159185 GATAGAGTTTGCATCGAGAG 57 NA Drosophila melanogaster 50 CG15742 FBgn0030462 FBtr0073733 1 1 1 60 X 13151943 13151961 CGTTCATCATGCATGACAG 59 13151901 13151919 TTGGTGAGCTCTTCAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32644 FBgn0052644 FBtr0073714 1 1 1 80 X 12862153 12862270 TCAGTGGACAAGAGTTATTCG 59 12862312 12862330 CAACATCAACAAGCTTCGT 58 NA Drosophila melanogaster 50 Pkcdelta FBgn0030387 FBtr0073645 2 1 1 113 X 12345381 12345399 GATGACGATGTTGACTCCA 59 12345476 12346267 AAAGAACAAGTGGCTCTCC 59 NA Drosophila melanogaster 50 CG2467 FBgn0030355 FBtr0073594,FBtr0073595 1 2 2 139 X 11806290 11806308 TACACTACCAACGGATTGC 59 11805446 11805534 TTGAGATCAACCTGCATGG 59 NA Drosophila melanogaster 50 FucT6 FBgn0030327 FBtr0073620 3 1 1 116 X 11601775 11601793 TTTCTTACCTCTGGCATGC 59 11601612 11601632 CATATACTCCTCCACACTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11203 FBgn0030249 FBtr0073385,FBtr0112978 3 2 2 185 X 10811065 10811139 GTAATCATTCCACAGGAGTG 57 10811285 10811305 GGATAGATCGTCCTTATTTCC 57 NA Drosophila melanogaster 50 CG32694 FBgn0052694 FBtr0071410 3 1 4 62 X 9893285 9893303 CAAACGAACGATTGGACTG 59 9893329 9894398 ATGGAGTCGATTTCCTTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG1791 FBgn0030163 FBtr0112968,FBtr0071429 2 2 2 168 X 9857893 9857911 TACTTGGTGCCTACAAAGG 59 9857683 9857762 GTACCAAACAAGTTGCTCTC 59 NA Drosophila melanogaster 50 CG9689 FBgn0030159 FBtr0071390 2 1 1 60 X 9776162 9776180 TAAGTCTGCAGAGGATGGT 59 9776203 9776222 GAATTTGTTGACCTCACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12075 FBgn0030065 FBtr0071253,FBtr0071254 2 2 2 63 X 8763928 8764014 CAACAGTTCCAGTGATGAC 58 8764041 8764059 CTTCAGAGCAATAACCGAG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG2147 FBgn0030025 FBtr0071166 3 1 1 68 X 8135143 8135161 CACAAGATTCAATCTCGCC 58 8135192 8135211 GATCCGGATATGGAATCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS14b FBgn0004404 FBtr0071096 2 1 1 102 X 7829571 7829589 CTGCATATTAAGCTGCGTG 59 7829655 7829673 CAATCTTCATGGACGAACG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CBP FBgn0026144 FBtr0071053,FBtr0071052 3 2 2 118 X 7235527 7235615 CTTGTTTAAGGCTGTGGAC 58 7235696 7235715 CTATCACAGCGAATGAAACG 59 NA Drosophila melanogaster 50 CG18155 FBgn0029945 FBtr0071051 2 1 1 116 X 7223487 7223505 TTCAATTGTATATGGCCGC 58 7223668 7223686 GTATAGCTATCCACAGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 2 12 15 239 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978621 6978640 AATTGATCTACCTCTGTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 CG32776 FBgn0052776 FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630 1 4 4 85 X 3791669 3795148 GAGTCTCGATGATGACTACG 59 3791603 3791623 CGGGATGATCAATAATCTCCA 59 NA Drosophila melanogaster 50 tlk FBgn0086899 FBtr0112680,FBtr0112682,FBtr0112681 3 3 3 86 X 3677585 3677720 CATTCCAGGAGAACTGGAC 59 3677770 3677788 CTATCTCTTCACGCTCAGC 59 NA Drosophila melanogaster 50 Mct1 FBgn0023549 FBtr0070393 1 1 1 80 X 2092962 2093859 TGATACACATAGTTACCGATGG 59 2093900 2093918 TGCCCTCGTTGAAATAGTC 59 NA Drosophila melanogaster 50 CG14803 FBgn0023513 FBtr0070310 3 1 1 62 X 1763892 1763910 CAAGTCACTCCACTTCCAG 59 1764000 1764019 GAATAGAGTTCGTGGTATGC 58 NA DesignNoJunction Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177 1 4 5 88 X 938610 938748 AATCTGGATAAGGCTCCTG 58 938800 938818 CTATCTGGCATACCTGGTC 58 NA Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 1 8 8 60 X 551391 551410 CATTATCTCATGGGATGCAG 58 551433 551451 TATCAGCTCAAACAGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33521 FBgn0053521 FBtr0091473,FBtr0091471,FBtr0091472,FBtr0091470 2 4 4 82 4 1210308 1210519 CGAATCTGGAATAAGCAAAGC 59 1210561 1210581 GTACATGATTGCTTAAACCCG 59 NA Drosophila melanogaster 50 CG1732 FBgn0039915 FBtr0089972 3 1 2 82 4 654474 654552 CTGTATTACACAAGGTGGC 58 654598 654616 ATATGAGCCACAGTAAGCA 58 NA Drosophila melanogaster 50 CG2177 FBgn0039902 FBtr0114519,FBtr0089132,FBtr0089133 2 3 3 79 4 333993 334012 TAACTCTTGGATTGGTTGTG 57 333875 333893 AACGTCTTGATGGCTAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 RpL6 FBgn0039857 FBtr0085804,FBtr0085805 1 2 2 92 3R 27420766 27420784 CAAGAAGGACCAGAAGGAG 59 27420692 27420710 ATGTTCTGCAAGTACTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11337 FBgn0039846 FBtr0085812,FBtr0085811 1 2 3 80 3R 27230185 27230203 GAGGAAGGAGAGGAATCCA 59 27230067 27230141 TCATGTTACGTCCATTGCT 59 NA Drosophila melanogaster 50 CG2218 FBgn0039767 FBtr0085627 2 1 1 86 3R 26253065 26253083 GAGGAAAGTTCAGATGTGG 57 26252997 26253015 CTTATCTCGCTCCAGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tpi FBgn0086355 FBtr0085582,FBtr0085583 1 2 3 138 3R 25959294 25959312 ATCAAGGACTGGAAGAACG 59 25959113 25959131 CCTCCTTGGAGATGTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 RpL32 FBgn0002626 FBtr0114556,FBtr0085592,FBtr0085593,FBtr0085594,FBtr0114555 1 5 5 60 3R 25871413 25871431 CGGATCGATATGCTAAGCT 59 25871309 25871327 ACTCTGTTGTCGATACCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7816 FBgn0039714 FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921 3 6 6 81 3R 25690544 25690624 GGGCGATAATCAAGATCCT 58 25690481 25690500 GATCGTGAAGATCAGTATGC 58 NA Drosophila melanogaster 50 CG14507 FBgn0039655 FBtr0113305 3 1 1 60 3R 25053242 25053262 CATAATACCGGAAATGTACGG 58 25053202 25053220 TTTGAAGACAAAGGAGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 2 7 8 82 3R 24639657 24639675 TACTGCTACGGATATTGGC 58 24639721 24640880 CGCTCAAACACCTTATAGC 58 NA Drosophila melanogaster 50 CG33346 FBgn0053346 FBtr0085306 3 1 1 60 3R 24495984 24496002 ATTGACCTCCAACAATGGG 59 24496026 24496044 AACTTTGCAGACTGATGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hrb98DE FBgn0001215 FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301 3 4 6 95 3R 24429337 24429355 CAATCAAGGCAACTATGGC 59 24429413 24429794 TTACTTTATCACCTCGTCCG 59 NA InUTR Drosophila melanogaster 50 CG31053 FBgn0051053 FBtr0085268 2 1 1 70 3R 23753806 23753824 TTGATCTTCCACATGACCC 59 23753754 23753772 TTATCTGTCGAGGATTCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31055 FBgn0051055 FBtr0085244,FBtr0085242 1 2 3 124 3R 23512758 23512776 ATGACACCCAATTTGTCGA 59 23512282 23512671 TTGCCGAATCTTACAATCCT 59 NA Drosophila melanogaster 50 CG12885 FBgn0039523 FBtr0085185 1 1 1 300 3R 23356800 23357017 TGATGAAGCTGCAATACCA 59 23357281 23357299 TAGTAAACAGGATGGCCAG 58 NA DesignRelaxed Drosophila melanogaster 50 TfIIA-L FBgn0011289 FBtr0085155,FBtr0085156,FBtr0085154 2 3 3 92 3R 23081684 23081766 TACGATAAGATCACCAGGTC 58 23081821 23081839 TTTCTGGAACACGTAGTCC 59 NA Drosophila melanogaster 50 CG18766 FBgn0042111 FBtr0085122,FBtr0085123 2 2 2 95 3R 23068902 23068984 GGTTCTATAAGACCGAGTACG 59 23068827 23068845 ATGAGGCCATGAAGTTGTC 59 NA Drosophila melanogaster 50 CG6059 FBgn0039491 FBtr0085130 2 1 1 115 3R 22949093 22949113 CTTAACGATCAAGTTCTGGTC 58 22948948 22948966 GAACGAGCTATTTCCTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG6503 FBgn0040606 FBtr0085025 3 1 1 84 3R 22250615 22250633 ATAGTGCCGAGAACAATCG 59 22250549 22250567 TTGATGTTCAGGCTGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nf1 FBgn0015269 FBtr0084953 1 1 3 144 3R 21819071 21819089 TTTGTCAACTGTTTGGAGG 58 21819196 21820468 CTGGACATTCTTTATCCGTG 58 NA Drosophila melanogaster 50 CG4774 FBgn0039360 FBtr0084931,FBtr0084929,FBtr0084930 2 3 3 80 3R 21512087 21512106 ATATGTTATAGTCCAGGGCG 58 21511695 21512044 TGTCCATCCAACAGATCTG 58 NA Drosophila melanogaster 50 jigr1 FBgn0039350 FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887 3 6 6 98 3R 21474749 21474768 GTACGATAGGTCAAACAAGC 58 21474829 21474919 CTTATACTGGTGGCATCGT 59 NA Drosophila melanogaster 50 CG34349 FBgn0085378 FBtr0112558,FBtr0112559 3 2 2 84 3R 20889764 20889782 TATCTTTCGCAGATCTGGA 57 20889827 20889909 GATTCGGAATCTGTATACTCTG 57 NA Drosophila melanogaster 50 Rpb10 FBgn0039218 FBtr0084688 1 1 1 60 3R 20543534 20543553 TTGGGTCTAAAGAGGTACTG 58 20543576 20543594 TTTCGATAAGATCCACGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slo FBgn0003429 FBtr0100631 2 1 17 173 3R 20520805 20520823 CTTCATAGCACAAAGTGCC 59 20525143 20528755 CGAGTGATATCACTTGCAC 58 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100632,FBtr0100636,FBtr0100637 3 3 17 93 3R 20521092 20521110 AGGACATTAAGGACGAGAC 58 20521838 20528849 CGATTGAGTACTAAGTCATCG 58 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100638,FBtr0100637 3 3 17 144 3R 20508113 20512918 AGGGCGAAGACATATTGTG 59 20515050 20515068 CTCAAGTTCCAAATCGGGT 59 NA Drosophila melanogaster 50 mld FBgn0083077 FBtr0111012 1 1 2 198 3R 20416955 20416973 TCATTCTCATCCACCTCCT 59 20417133 20441782 CGCGATTTATATTGAGCATCC 59 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 3 5 6 83 3R 20045868 20045949 CTAGAGATTACTGGCTGCG 59 20045803 20045821 GTTGTCGTTCAGGTAGAGG 59 NA Drosophila melanogaster 50 CG10219 FBgn0039112 FBtr0084466 2 1 1 93 3R 19585754 19585772 CTTCATAGCTCCATCCCAG 59 19585618 19585636 GTAGTCAACTACCATGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10252 FBgn0039104 FBtr0084475 2 1 1 90 3R 19521519 19521597 CCAATGTCATCGATAAGCG 58 19521447 19521465 TACGAAGGAGCATTAACCC 59 NA Drosophila melanogaster 50 CG15498 FBgn0038892 FBtr0084122 3 1 1 171 3R 17393570 17393901 CCATACCAGTACACAATCC 57 17393417 17393435 TATGTGAACTTCCACAGGT 58 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0110938,FBtr0110939,FBtr0084021,FBtr0084022 2 4 12 106 3R 17027123 17027417 TATATGGTAGCATGCGTCG 59 17027487 17027505 GTAGATGTCGTCGAGATCG 59 NA Drosophila melanogaster 50 Cpr92A FBgn0038714 FBtr0083811 2 1 1 76 3R 15423765 15423783 CAGTACCAGCTCATTACGG 59 15423707 15423725 AGGATACGAAAGCAGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5250 FBgn0038691 FBtr0083743 2 1 1 67 3R 15054197 15054216 CTACTTACAAGGAGGATCCC 58 15054149 15054167 GTTGATCGGAATGTTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL55 FBgn0038678 FBtr0083754 3 1 1 73 3R 14920393 14920411 GGATCCACGATAAACATCC 57 14920282 14920300 GTTAAGGTGCTCAGATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 14-3-3epsilon FBgn0020238 FBtr0083567,FBtr0083565,FBtr0083566,FBtr0083568 3 4 4 80 3R 14073561 14073579 TATTGCCATGAACGATCTG 57 14073621 14073709 ATCTCATAGTAGAACACCGAG 58 NA Drosophila melanogaster 50 PP2AB FBgn0042693 FBtr0083553,FBtr0083552 3 2 5 81 3R 13995749 13995767 GTAGAAGGAGTAGCTCCAG 58 13995812 13997260 GTTTGTTAGCCAAACTGCT 58 NA Drosophila melanogaster 50 CG7397 FBgn0038543 FBtr0083531 2 1 1 81 3R 13598313 13598395 GGAGATTGTCAAATCCAAGG 58 13598251 13598269 CAGCTTATTGCAGTCTTCG 58 NA Drosophila melanogaster 50 CREG FBgn0025456 FBtr0089895,FBtr0089896,FBtr0089897 2 3 3 60 3R 13219734 13219752 TTATCTCCATCGACGACAG 58 13219692 13219710 AGCAGGAATCGAATACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31268 FBgn0051268 FBtr0083390 3 1 1 110 3R 12858006 12858089 ATGAACAGAAACAAGGCAG 58 12858163 12858181 TTTCATCGGAATTTGCCCT 59 NA DesignRelaxed Drosophila melanogaster 50 Gyc-89Da FBgn0038435 FBtr0110963,FBtr0110962 2 2 2 60 3R 12299798 12299816 ACCACGACATGAAGATCAC 59 12299839 12299858 TTGTGCATAATCCAGGTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8925 FBgn0038404 FBtr0083253 3 1 2 101 3R 12000208 12003269 TCTACGTGTTCCAGATTGC 59 12003332 12003352 TGGAGGACTGACTAATATTGC 59 NA Drosophila melanogaster 50 Mhcl FBgn0026059 FBtr0083233,FBtr0083229 1 2 6 165 3R 11895717 11895735 GCTCTATCAGTGATCTGGA 57 11894322 11895588 TACTTGGCGTTATTTCTCG 57 NA Drosophila melanogaster 50 c(3)G FBgn0000246 FBtr0083196,FBtr0083195,FBtr0083194 3 3 3 110 3R 11617460 11617478 AACATTACGACAAGGAGCT 58 11617297 11617386 TATTATTCAGCTCTTGCGC 57 NA Drosophila melanogaster 50 CG14871 FBgn0038343 FBtr0083158 2 1 1 176 3R 11311208 11311226 CTTTGAATGCCAGCATCTC 59 11310711 11310729 GTATGAAGTCGATGAGCCT 58 NA DesignNoJunction Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 3 7 12 160 3R 11122417 11125003 AGAAATACGATGAGGTTGC 57 11126526 11126544 CTTCTCCTCAGAGACTTCC 58 NA Drosophila melanogaster 50 Oscp FBgn0016691 FBtr0083064,FBtr0083063 3 2 2 82 3R 11092175 11092194 GTCTCTGAAGATCACTTCCC 59 11092239 11092257 TCATGTCGACGTACTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4210 FBgn0038302 FBtr0083049,FBtr0083050 3 2 2 95 3R 11040075 11040153 ACAACGATACTGATCAGGC 59 11040212 11040230 GGACATAGATGTCCTCGAC 58 NA Drosophila melanogaster 50 btsz FBgn0053555 FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530 2 5 5 100 3R 10634158 10634176 ATAAGCTGAGTGCTTTGGA 58 10634011 10634096 TAGATACACCTTAACGTAGGG 58 NA Drosophila melanogaster 50 cv-c FBgn0086901 FBtr0112632,FBtr0112630 1 2 3 153 3R 10235277 10235547 AGACAATAACTCCACATCGT 58 10235143 10235161 AGACATATCCTTTGGTGGC 59 NA Drosophila melanogaster 50 Kif19A FBgn0038205 FBtr0082912,FBtr0082911 3 2 2 80 3R 9939301 9939320 CGGCAGCATATGATTATCTC 58 9939178 9939258 TGATTCAATGTCGTCATCG 57 NA Drosophila melanogaster 50 CG8863 FBgn0038145 FBtr0082751,FBtr0082753,FBtr0082752,FBtr0082755 3 4 5 211 3R 9210112 9210130 GATGACCAAGTGTATTGCC 58 9210395 9210413 GTTGCTTGGGATCAAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 poly FBgn0086371 FBtr0082772 1 1 1 60 3R 9188264 9188283 CAAATGGCTAACGAATACCG 59 9188223 9188243 GCGAATATCCTCTACTAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8795 FBgn0038139 FBtr0100149,FBtr0082774,FBtr0082773 2 3 3 128 3R 9157366 9157632 TTTGTTATGCTCAGGAATGC 58 9157257 9157275 GTTAGAACTGTCGCATTGG 58 NA Drosophila melanogaster 50 CG14384 FBgn0038097 FBtr0082731 2 1 1 60 3R 8791909 8791927 GAGGAAATGGACGATGAGG 59 8791867 8791885 GGATAGCATTGTACTCGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Men FBgn0002719 FBtr0082660,FBtr0082661 1 2 2 178 3R 8539997 8540015 TCTTGGTATTGCCAACCTG 59 8539781 8539799 AAGTATCGATGGGTTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14394 FBgn0038079 FBtr0114501,FBtr0113226 1 2 6 60 3R 8522001 8522019 AGTCTGTCCATAGTCATGC 58 8522808 8522826 TGATGAGGGACTGAATGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10096 FBgn0038032 FBtr0082603,FBtr0082604 2 2 2 93 3R 8217631 8217649 GTATACCAAGGCTCTGACG 59 8217501 8217575 ATAGCTGGCAATTATGACAC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG17738 FBgn0038009 FBtr0082565 3 1 1 64 3R 8096862 8096880 TTGGAGGCTTTGGTTATGG 59 8096907 8096926 GAAACCTCCATAGAAGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 1 15 15 89 3R 7811197 7811279 CCCAAGAATAACATGCTTAAGC 59 7811129 7811148 CAGCTGTGTAAGATTAGCCT 59 NA Drosophila melanogaster 50 CG3397 FBgn0037975 FBtr0082504 2 1 1 222 3R 7809366 7809384 TCAGAAGAGGAACGTTGAG 58 7808960 7808978 AACCGTGGATAAAGTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12213 FBgn0037968 FBtr0082510 3 1 3 181 3R 7792356 7792377 AACTATGTACCTAAAGTCCAGC 59 7791995 7792214 GATTTGGGCACAATTTGCA 59 NA Drosophila melanogaster 50 CG31116 FBgn0051116 FBtr0082528,FBtr0082526 1 2 5 107 3R 7624475 7624582 TTATGCTGCAAGTAAACCCT 59 7624202 7624223 GTGATTGCTTTGAACTATCTCC 59 NA Drosophila melanogaster 50 CG31116 FBgn0051116 FBtr0082528,FBtr0113390,FBtr0113391 2 3 5 121 3R 7628396 7631758 TCTTATGTATGGTCGCTATACC 58 7628048 7628314 CCAGCAGTTCCTTATTCCT 58 NA Drosophila melanogaster 50 CG14714 FBgn0037929 FBtr0082422,FBtr0113222 1 2 3 78 3R 7498790 7498808 CAGCCACGAGATTAATGGA 59 7498953 7498971 AGAACAGTGAACGGTTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10535 FBgn0037926 FBtr0082420 3 1 1 103 3R 7480674 7480849 CTATGCCTTGCTAAGTCCC 59 7480916 7480934 CAAATCCAATGATCCCGTC 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG14691 FBgn0037829 FBtr0082314 2 1 2 82 3R 6579577 6579771 CTCGAATCACATACTGAAGGT 59 6579515 6579533 TTACCAGCGAAGTCTTCAC 59 NA Drosophila melanogaster 50 CG11870 FBgn0037804 FBtr0090031,FBtr0090030,FBtr0090033,FBtr0090032 2 4 4 95 3R 6117481 6117566 CCACATCTACGAAGTATTTGAG 58 6117620 6117640 TTCCTTTCAGACAGATAGTCG 59 NA Drosophila melanogaster 50 Fmr1 FBgn0028734 FBtr0082200,FBtr0082198,FBtr0082199 2 3 5 192 3R 5930726 5930802 TTTCGAATCAAGATCGCTG 58 5930470 5930488 GAAGCTGCTGATCAATCTC 58 NA Drosophila melanogaster 50 CG32468 FBgn0052468 FBtr0081592 3 1 1 74 3R 3139065 3139083 AATTGGCCCACAGATAGAG 59 3139009 3139029 CTTAAGAGTAGGCTTAAAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1307 FBgn0026566 FBtr0081698 3 1 1 74 3R 2482897 2482915 GGAATCTTCGGTGTCTAGC 59 2482587 2482606 TTAAAGTTGTCGTTCAAGCC 58 NA DesignNoJunction Drosophila melanogaster 50 Osi10 FBgn0037417 FBtr0078600,FBtr0078601 3 2 2 158 3R 2092757 2092839 ATATCATTGCTGGGCAGTC 59 2092961 2092979 CTCTACCTGATCCAACTGC 59 NA DesignRelaxed Drosophila melanogaster 50 Osi4 FBgn0037412 FBtr0078615 2 1 1 70 3R 2045358 2045377 AAGATCAAACGTGAGGACTC 59 2044286 2044304 ACGTAGTTGTAGATCAGGG 58 NA DesignNoJunction Drosophila melanogaster 50 Spec2 FBgn0044823 FBtr0078739 1 1 1 138 3R 1444207 1444225 GACCAACTCGATACACTCG 59 1443258 1443276 AAAGGTATGTCTGCTGCTC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CRMP FBgn0023023 FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686 2 4 4 113 3R 1400049 1400129 CTACATCAAGAATGGCGAG 57 1400402 1400420 CCAGGTATCGTTATTTCCG 57 NA Drosophila melanogaster 50 CG31550 FBgn0051550 FBtr0078685,FBtr0113409,FBtr0078684 3 3 3 246 3R 1314709 1314728 CTAAAGGAGGACAACATTGG 58 1314990 1315101 GACGTGGATTGTTCAAAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31522 FBgn0051522 FBtr0078941,FBtr0078939 3 2 4 148 3R 272465 272486 CCTCACATATGTCTATCTGGTC 59 271122 272149 AACCGGAAATGCCTATCTC 59 NA Drosophila melanogaster 50 CG9778 FBgn0037233 FBtr0078957 3 1 1 87 3R 143397 143415 AACCAGCAATAACCATCCC 59 142781 142799 GTCATCCGACTTGATCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338 1 5 15 165 3R 110121 120861 CGTTAAAGGAGGTGATGGA 58 120990 121008 CTTATCGCGAATGTCTTGC 59 NA Drosophila melanogaster 50 CG12581 FBgn0037213 FBtr0078961,FBtr0078962 3 2 2 107 3R 8593 8611 GACTCCGGTAATTCTGGTG 59 9470 9489 CTCTTGACGTATGGAGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 mRpS5 FBgn0044510 FBtr0111146,FBtr0111144,FBtr0111147,FBtr0111145 2 4 4 61 3L 24530644 24530665 GCTTGTTATCTTCACATGAACC 59 24530685 24530705 GAAGCTGGTATTACGTAAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slif FBgn0037203 FBtr0078555,FBtr0078556,FBtr0078557 3 3 3 86 3L 22885585 22885671 AATCTTTGCGTCCATAATGG 58 22885720 22885738 ATGGTGTATGCTAACAGGG 59 NA Drosophila melanogaster 50 CG11426 FBgn0037166 FBtr0078506 1 1 1 108 3L 22465972 22465990 TATGCCATGATCTACGTGG 58 22466062 22466080 TATACCAGGCTACCATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nopp140 FBgn0037137 FBtr0089580 2 1 2 111 3L 21827843 21827861 CAGAAGCGCAAGTTTAGTG 59 21828572 21828591 TGTTGTGCTTCTTAAAGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14564 FBgn0037131 FBtr0078435 3 1 1 91 3L 21750424 21750442 AGTTCAACCCAAGATCGAG 59 21750497 21750515 TAAGTGGCTCGGTATTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10512 FBgn0037057 FBtr0078297,FBtr0078300,FBtr0078298 1 3 4 296 3L 21199477 21199495 GATGCCATTAGGAGGATCC 59 21200564 21200582 TTCTTCTCCTTGTCTCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Ac78C FBgn0024150 FBtr0078322 3 1 1 91 3L 21133113 21133131 AGTACCTTAATCCCTGGAC 57 21132912 21133061 CATATTGGATCGGAACATATCC 58 NA Drosophila melanogaster 50 skd FBgn0003415 FBtr0078328,FBtr0112830,FBtr0078329 1 3 3 80 3L 20989472 20989493 TTTCTAACATTCGAGGAAGAGG 59 20989354 20989431 GTCCATATGAGTGTCCCAG 59 NA Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234 2 10 10 73 3L 20826943 20826961 CAAATGCGTCAAACTGGAC 59 20827130 20827148 TGTTGCGTTTGAGTATGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6981 FBgn0036945 FBtr0074821,FBtr0074820 3 2 2 97 3L 20182279 20182428 AACATAAGGGAGAGCTGTG 58 20182489 20182507 GTAACCCTTCCAGTAGTGG 58 NA Drosophila melanogaster 50 CG7433 FBgn0036927 FBtr0074908,FBtr0074909 2 2 2 97 3L 19992458 19992476 AACATAGCTCCGAAAGGAC 59 19992275 19992400 TTCTGGTACCATATGAAGATGC 59 NA Drosophila melanogaster 50 CG14087 FBgn0036868 FBtr0074996 3 1 1 60 3L 19382794 19382814 TCTATTGCTTAGGATTGCTGG 59 19382836 19382854 TAGAAGCTTGTTTGAGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GNBP2 FBgn0040322 FBtr0075094,FBtr0075095,FBtr0075096 1 3 4 133 3L 18667368 18667387 CTATAGCATCAAGCCTCCAG 59 18667190 18667272 GTTGGAGCATCAGATAGGG 59 NA Drosophila melanogaster 50 AlCR2 FBgn0036789 FBtr0100242 1 1 2 74 3L 18480285 18480523 CATTTATCTTTCTGGCCGTC 58 18480230 18480248 ACAGTATTGGGTTCATGGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6652 FBgn0036687 FBtr0075291,FBtr0075292 2 2 2 80 3L 17014034 17014052 CCCTAGAGGAATCAATGGA 57 17013905 17013991 GTACACTAATGTCCTCATCG 57 NA Drosophila melanogaster 50 nudC FBgn0021768 FBtr0075328 3 1 1 109 3L 16802358 16802377 TGAATCCGATAAGAGTGAGC 59 16802449 16812016 GAATCTTGAGCTCCACCTC 59 NA Drosophila melanogaster 50 CG9674 FBgn0036663 FBtr0075341,FBtr0075344 2 2 4 88 3L 16785600 16785618 TAAGAATGCCGGATTACCC 59 16784780 16785548 GAACAATCACACGTGATCG 59 NA Drosophila melanogaster 50 CG4101 FBgn0025558 FBtr0075314 3 1 1 110 3L 16605745 16605763 AGCTTGCTAATCCGATACG 59 16605837 16605855 GGACTCCGGATTACTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32158 FBgn0052158 FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404 1 5 7 106 3L 16485841 16485859 CGTACAGCAACTTCAAGAC 58 16485591 16485772 AATGATTGTCGTATCCCTCC 59 NA Drosophila melanogaster 50 CG13067 FBgn0036589 FBtr0075465 3 1 1 239 3L 16264444 16264535 TCAAATACTTCGCTCTGTG 57 16264738 16264756 AGTCTTAACGGTAGTAGGC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG5284 FBgn0036566 FBtr0075445 2 1 2 118 3L 16087340 16087463 CTTTACCGTGATAATGTTCGAG 59 16087542 16087560 CATCGTAGATACCTTGCCT 58 NA Drosophila melanogaster 50 Sox21a FBgn0036411 FBtr0075748 2 1 1 61 3L 14099830 14099848 GAATACTGGAAGCCATCAC 57 14099787 14099805 CCATGAAAGCGTTCATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10741 FBgn0036373 FBtr0075810,FBtr0075811 1 2 2 138 3L 13494304 13494390 CCACTCTACAGATATGGCG 59 13494492 13494510 CTTAGGTGTACCACTTGGC 59 NA Drosophila melanogaster 50 CG11268 FBgn0036336 FBtr0075876 1 1 1 107 3L 13012061 13012079 TACGGATACATTTGGGTGG 59 13012150 13012296 ATTCTGGACCAAGTGAGTG 59 NA Drosophila melanogaster 50 Est-P FBgn0000594 FBtr0076004 3 1 1 60 3L 12184146 12184166 AACGGTAAGCATCTATAAGCC 59 12184187 12184206 GAGTACTACGACAGGAAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11658 FBgn0036196 FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127 1 5 5 86 3L 11694639 11694657 AACAAGGGTATTGCCAGTC 59 11694509 11694589 GCTGTCATTTACATGCGAG 59 NA Drosophila melanogaster 50 CG11652 FBgn0036194 FBtr0076131,FBtr0076130 1 2 2 160 3L 11688043 11688061 ATGTGATAGTACCACAGGC 58 11687837 11687920 CTTGTAAGCCTTTAGCAACG 59 NA Drosophila melanogaster 50 CG6140 FBgn0036162 FBtr0076177 3 1 1 165 3L 11457238 11457256 CAATGGACACTTTGAGCTC 58 11457036 11457054 CATTAGCGACTCATTCACG 58 NA DesignNoJunction Drosophila melanogaster 50 tna FBgn0026160 FBtr0076267,FBtr0112923,FBtr0076268 1 3 3 118 3L 10865269 10865287 AACTATCAGCACAGTCCAG 58 10865369 10865454 ATTTCTTCGCTGTTGTCCA 59 NA Drosophila melanogaster 50 simj FBgn0010762 FBtr0076262,FBtr0076263 3 2 3 121 3L 10681692 10681791 TTAGAGCTTTGGGACAAGG 59 10681876 10682039 GTTATTGTTGAAGGCTGCC 59 NA Drosophila melanogaster 50 CG34238 FBgn0085267 FBtr0112432 3 1 1 154 3L 10619997 10620015 CCATCCTAGTTGTGTTCGT 59 10620133 10620206 ACTCCACAATCAATCCCAC 59 NA Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385 2 8 8 112 3L 9825956 9826035 GAGTTAACCGGGACTACAC 59 9826111 9826129 TCTTTCCCAAACTTAGCCG 59 NA InUTR Drosophila melanogaster 50 LanB2 FBgn0002528 FBtr0076382 3 1 1 106 3L 9616210 9616290 TAGATTGGAGAATCGTTTGG 57 9616358 9616377 TCAGATTCTTCTGAATGGTG 57 NA Drosophila melanogaster 50 CG32036 FBgn0052036 FBtr0114525 1 1 1 81 3L 9481436 9481454 CGATTGGTGGTACAATGTC 58 9481313 9481331 AATGTAGGGATTGTGCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33926 FBgn0053926 FBtr0091930 3 1 1 79 3L 9436443 9436461 TCCTCCAATATTAGGGCCA 59 9438841 9438859 TCAGTGATCTCCATGTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rdl FBgn0004244 FBtr0076535,FBtr0076536 2 2 3 108 3L 9152790 9152809 GATGGACTGAGTAGTGTTGG 59 9148402 9152720 AATAGTTGCCTGTGGTTAGG 59 NA Drosophila melanogaster 50 CG5804 FBgn0035926 FBtr0076591 3 1 1 71 3L 8781523 8781606 TTTCAACGCTATCCTCGAG 59 8781470 8781488 TAGAACTCCAGGTACACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6416 FBgn0035917 FBtr0089568,FBtr0089561,FBtr0089563 3 3 8 88 3L 8620819 8627689 ATTGTGAATCAGCCCTACC 59 8627741 8627759 CTCAAGTAGGACTCTGTCG 58 NA Drosophila melanogaster 50 Unr FBgn0035895 FBtr0114592,FBtr0076661 2 2 2 84 3L 8429048 8429130 ACATAGAAGGATGTGTAACTCG 59 8428985 8429003 TCATAGGTAATCACACCGC 59 NA Drosophila melanogaster 50 syd FBgn0024187 FBtr0076769,FBtr0076768 2 2 2 82 3L 7919927 7921024 TCGCATAAACGATAACGAC 58 7919863 7919881 AGTAACTCTTATCGCCTCG 58 NA Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112702,FBtr0112698 2 6 10 80 3L 7693414 7693497 ACTGTACAAGGAAGTCATCC 59 7693353 7693373 TTAGCTTCGAATGGTTCTACC 59 NA Drosophila melanogaster 50 lqf FBgn0028582 FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794 3 6 6 87 3L 7527257 7527345 GGATTTCAAGGATCCAAACG 59 7527392 7527413 AGAAATATCCAGCAGATCTAGC 59 NA Drosophila melanogaster 50 CG13296 FBgn0035687 FBtr0076997 1 1 1 60 3L 6156266 6156284 ACAGCTCAACTGGATAGTC 58 6156308 6156326 GCTCAATTCGGAAGATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lcp65Ae FBgn0020640 FBtr0077056 3 1 1 88 3L 6131092 6131110 CTTGGAATCCGATGTTGGA 59 6130962 6130980 ACTTCAACTGTCCCTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13721 FBgn0035554 FBtr0073328 3 1 1 60 3L 4497248 4497268 ATACTATGGAGGTTACTACGG 57 4497208 4497229 CTAGAAGTAGTGTCCATAGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32250 FBgn0052250 FBtr0073287 3 1 1 83 3L 4319226 4319244 TATCCACTGGATACAGTGC 58 4320169 4320187 GATCTCCTTGATCACTTGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG1319 FBgn0035529 FBtr0073239 2 1 1 163 3L 4292833 4292852 TTAACATAACCTTCGTGCGT 59 4292978 4292996 GGTCTTGAAGATCAGGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 prominin-like FBgn0026189 FBtr0073120,FBtr0073119,FBtr0073118 1 3 3 80 3L 3119960 3120042 CTTGATCAATTAACCCACGC 59 3119899 3119920 CATTTCTGCCAAGGAATTACTC 59 NA Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 1 9 15 80 3L 3083795 3084812 CTCGCCACTTATATGAATCG 58 3084852 3084873 CAAATTAAGTAGTGAGAACCCG 59 NA Drosophila melanogaster 50 Sk2 FBgn0052484 FBtr0072984 2 1 1 62 3L 3049407 3049425 TCTACCTGATCCTCATACG 57 3049451 3049469 TGTTGTAGAGGAAGCTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32488 FBgn0052488 FBtr0073008 1 1 1 60 3L 3015829 3015847 ATTTCAAGGCAGGAGATGG 59 3015787 3015807 TATCCTCCTTGATCTCTATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34025 FBgn0054025 FBtr0100080 3 1 1 60 3L 2960682 2960701 AGACTTCCGAATTCTAACAC 57 2960641 2960659 TTCTCCAAGGCAATACCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL8 FBgn0024939 FBtr0072925 2 1 2 181 3L 2587718 2587736 TTCGAGTACTAATCCCGTG 58 2587880 2588092 GATGATGTCCTTGACAACTC 58 NA InUTR Drosophila melanogaster 50 CG33231 FBgn0053231 FBtr0072896 1 1 1 63 3L 2465278 2465296 TAGAGCAGCTAGTGATGAG 57 2465323 2465341 AACATTCCTCAGGATCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13800 FBgn0035338 FBtr0072891 1 1 1 60 3L 2406754 2406775 ACTTGATGTTACTACTAGCACC 59 2406796 2406814 ATCGTTAGAGGTTGGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ptp61F FBgn0003138 FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718 2 4 4 144 3L 1346060 1346078 AGAAACAGATCAAGTGCCA 59 1345856 1345953 TCGGTTAATTTGAACCATCG 58 NA Drosophila melanogaster 50 CG9186 FBgn0035206 FBtr0072727,FBtr0072728 1 2 2 67 3L 1312565 1312583 AATTTGGACGGACAAATCC 58 1312516 1312534 ATCTTGACATCACTTGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LysB FBgn0004425 FBtr0072628 2 1 1 62 3L 1207603 1207621 AATCTTCCAGATCAACGAC 57 1207647 1207665 TCATTGTAGGAGAAGCGAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12038 FBgn0035179 FBtr0072619,FBtr0072620 2 2 2 169 3L 994903 994981 ATAATGCAGTATCTGGCCTC 59 995113 995131 GCACTCTGGTACTTCAGTC 59 NA Drosophila melanogaster 50 CG7047 FBgn0035103 FBtr0072535,FBtr0072534,FBtr0072536 3 3 3 136 3L 177250 177268 ATAAAGTGCAGAGTGTCCC 59 177066 177152 AAATACTCGATGGTCTCAGTG 59 NA Drosophila melanogaster 50 snoRNA:Or-aca4 FBgn0082922 FBtr0113512 2 1 1 60 2R 13504275 13504293 GTGGCAAGAGTAGCTACTG 59 13504317 13504335 TTTGATCTACCTTCAGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tkr FBgn0003715 FBtr0072458,FBtr0100126,FBtr0072457,FBtr0072456 1 4 4 178 2R 20981953 20981972 GTAAGGAGTTTGGAAAGGAG 57 20979236 20981812 GAGACCAAACATATGTGGC 58 NA Drosophila melanogaster 50 CG30427 FBgn0043792 FBtr0072413 3 1 4 84 2R 20817351 20817369 TGAAGTGATACCTGTGGAC 58 20817232 20817303 CTGAAGAGGTCTCTTCTCC 58 NA Drosophila melanogaster 50 Dll FBgn0000157 FBtr0072378,FBtr0072379 1 2 2 166 2R 20705136 20705154 ACCTATCAGCATTTCGGAC 59 20705284 20707346 ATGGAGAAGTCATCCTTCG 58 NA Nonspecific Drosophila melanogaster 50 Dll FBgn0000157 FBtr0072378,FBtr0072379 2 2 2 166 2R 20705136 20705154 ACCTATCAGCATTTCGGAC 59 20705284 20707346 ATGGAGAAGTCATCCTTCG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG13569 FBgn0034979 FBtr0072283,FBtr0072284 3 2 2 126 2R 20011038 20011115 ATCCATCAAGTTCTGCCAC 59 20010930 20010948 CTTATCGGAGCTAACGACG 59 NA Drosophila melanogaster 50 CG2970 FBgn0034936 FBtr0072145 1 1 1 96 2R 19837691 19837771 ATCCGTGATATTCGACTGC 59 19837831 19837849 CCTCCGATTCGAGAATAGC 59 NA Drosophila melanogaster 50 mRpL43 FBgn0034893 FBtr0072084 2 1 1 90 2R 19586040 19586123 GTGGGAGAGTACTTGAACG 59 19586176 19586195 TCTTTAGCAGGTCAATCCAC 59 NA Drosophila melanogaster 50 CG34372 FBgn0085401 FBtr0112597 2 1 1 102 2R 19354701 19354719 GAGTATCACTATCTGGGCA 57 19354782 19361612 GATGAAAGGACTTGAGATACTG 58 NA Drosophila melanogaster 50 yellow-d FBgn0041712 FBtr0072011 2 1 1 167 2R 19267484 19267503 TACAATTCGCGAAACTTTGG 59 19267694 19267712 GAAGTTGACCTCCTTCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Klp59D FBgn0034827 FBtr0071968 1 1 1 60 2R 19031671 19031689 TCTAGAGACTTACGCTCAC 57 19031710 19031731 GTACTGCTCTATTTCCTTATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3074 FBgn0034709 FBtr0071785,FBtr0071784 2 2 2 153 2R 18079062 18079174 CATCTCCAACACTCTATGC 57 18078927 18078945 CGTGGTATTGTACTTGCTG 58 NA Drosophila melanogaster 50 Gr58a FBgn0041239 FBtr0071728 3 1 1 60 2R 17868469 17868487 TCCGTCAACGTATAAGGTC 58 17868511 17868529 ATAAGCCAAACTCGTTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HmgZ FBgn0010228 FBtr0071673,FBtr0071674 3 2 2 155 2R 17585804 17585905 GAAGGATAAGACCGAGTGG 59 17585667 17585685 TTCTTCTTGGCCTTCTTGG 59 NA Nonspecific Drosophila melanogaster 50 CG30387 FBgn0050387 FBtr0071597,FBtr0071595,FBtr0071596 3 3 3 80 2R 17194842 17194917 GTCTTAAAGGAGGATCAGC 57 17194961 17194979 CATTGTATTGGAAACGCTG 57 NA Drosophila melanogaster 50 CG9394 FBgn0034588 FBtr0071567 1 1 1 60 2R 17006858 17006876 CTCATGTTCCATGTGAACC 58 17006898 17006918 CATAAACTTCCACCAGATAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Treh FBgn0003748 FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536 3 6 6 81 2R 16972827 16972845 TTTAATGCCATGATGGAGG 57 16972889 16972968 GTGCACTGAAGTACTTATCG 58 NA Drosophila melanogaster 50 bl FBgn0015907 FBtr0086219 3 1 4 91 2R 16483145 16483163 GTTCGCATACTGATTCCGA 59 16483312 16485968 TTTGGATGGTTCTGAGTCC 59 NA InUTR Drosophila melanogaster 50 Obp57e FBgn0050145 FBtr0086265 3 1 1 63 2R 16435543 16435561 CTTTCTAACATGCGTCCTC 58 16435498 16435516 ATCGATCTGCACATTACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16926 FBgn0040732 FBtr0086499 1 1 1 71 2R 15388240 15388258 AGATAAGGGTTCCGTTGAC 58 15388111 15388129 TTGTCGTTGTACTTGTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 5-HT1B FBgn0004572 FBtr0086599 1 1 1 84 2R 14914735 14914753 TATTTGGTTGCATCTCTGG 57 14914213 14914689 CATTACTTATCTCGTAGACGG 57 NA Drosophila melanogaster 50 Jheh2 FBgn0034405 FBtr0089969 2 1 2 80 2R 14744764 14744782 ACATATCTGCCCAAATGGA 58 14744188 14744720 TGAAGAGCCCTGAATTTCC 59 NA Drosophila melanogaster 50 CG15088 FBgn0034381 FBtr0086646,FBtr0086645 2 2 2 82 2R 14616064 14616082 GGATTTCTACGGTGTCTCC 59 14615935 14616021 GATTAACTCCGTAAATCCATGC 59 NA Drosophila melanogaster 50 GstE5 FBgn0063495 FBtr0086673 3 1 1 60 2R 14292315 14292336 GGATGATGGTAACTACATTTGG 58 14292356 14292375 ATATTTGGACACCAGATACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pen-2 FBgn0053198 FBtr0089842 1 1 1 60 2R 14165340 14165358 AGCAGAGCCAAATAAAGAG 57 14165456 14165474 ATCAGCCAGAATAGAGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 Sema-1b FBgn0016059 FBtr0086890,FBtr0086891 3 2 2 107 2R 13565405 13565423 ACAAGACAAAGTCCTAGCC 59 13564084 13565334 TTGTAGATGACGTCCTTGG 58 NA Drosophila melanogaster 50 Dcr-2 FBgn0034246 FBtr0086904 3 1 1 80 2R 13466225 13466309 CACAATTTACAGCGATCCC 58 13466163 13466183 CTGTAGAGTACTTTACACGCT 59 NA Drosophila melanogaster 50 Ngp FBgn0034243 FBtr0086906 1 1 1 82 2R 13454602 13454621 ATTCTTAGTGCCGAATATCC 57 13454481 13454499 AATAGATTGATGAGCGCAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG4847 FBgn0034229 FBtr0086937,FBtr0086934,FBtr0086933 1 3 5 191 2R 13400212 13400290 GACTTCTTGAGCCAATCTG 58 13400443 13400463 GGTCAATTGACTAAGGAACTC 58 NA Drosophila melanogaster 50 CG4847 FBgn0034229 FBtr0086937,FBtr0086936,FBtr0086934,FBtr0086933,FBtr0086935 3 5 5 68 2R 13400456 13400474 AATTGACCGGTCTGAAGAG 59 13400570 13400589 GGTTGACCAACTTCAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30457 FBgn0050457 FBtr0086998 2 1 1 219 2R 13048142 13048160 CTACAACTATGCTCCCGTC 59 13047941 13047959 AATGTAGGTGTTCACTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6421 FBgn0025827 FBtr0087043 3 1 1 65 2R 12760234 12760252 CACGATTATGCTCGAATCC 58 12760281 12760299 GAAATTGTAGGGCATGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Picot FBgn0024315 FBtr0087115,FBtr0087114 2 2 2 83 2R 12544687 12544777 ATTCCTATTGATGACTCTCAGG 59 12544625 12544643 GCCATAGAAGAAGGACGAC 59 NA Drosophila melanogaster 50 CG8366 FBgn0034054 FBtr0087201 1 1 1 125 2R 11842950 11842969 ATGTATCGCTTAAGATCGTC 57 11843114 11843132 CTGTGCTCTTGTTTAGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG8192 FBgn0034030 FBtr0087354 3 1 1 145 2R 11433076 11433094 TACCTAAAGATCCAGGGAC 57 11432885 11432969 GCATAGTATCCAGAGTTTCTG 57 NA Drosophila melanogaster 50 CG34365 FBgn0085394 FBtr0112588,FBtr0112589,FBtr0112590,FBtr0112587 3 4 4 99 2R 11344307 11350808 TATCGAGGAAGAAACGTCAG 59 11350870 11350888 CTCATCCGGATTGGATTCC 59 NA Drosophila melanogaster 50 CG8102 FBgn0034007 FBtr0087393,FBtr0087394 3 2 2 60 2R 11184882 11184901 CCAAACTTTACTGTCTCAGC 58 11184841 11184859 GACATCTCTTCCTCCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11808 FBgn0034000 FBtr0087366 1 1 1 60 2R 11104309 11104327 AACAATGAAACGGTCACAG 58 11104351 11104369 TTACATCTTCGTTTCGGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Als FBgn0033920 FBtr0087540 1 1 1 80 2R 10159222 10159300 CTAGGATTCGGCATTCTAGG 59 10159341 10159361 AAATAGATCCTTGGGTAGCTG 59 NA Drosophila melanogaster 50 CG8394 FBgn0033911 FBtr0087577 1 1 1 60 2R 10087346 10087364 GATCCTGGATGCTATTCGT 58 10087304 10087324 TTCAGTGACTTAAGGAATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13349 FBgn0033886 FBtr0114494,FBtr0114493 3 2 5 70 2R 9846689 9846707 AAGAACTCAACCACATCGA 58 9846637 9846655 TAGGCTTGGAATGGATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930 3 5 6 106 2R 8335508 8335527 TATCATAACCTCAACAAGCG 57 8335595 8335676 GAGTTATCACTTGTGTACGC 58 NA Drosophila melanogaster 50 CG8290 FBgn0026573 FBtr0088042 1 1 2 103 2R 7860538 7862871 AGCTGCTGATAAACAAGCT 59 7862938 7862956 GCATGTCATCTTCGTTGTC 59 NA Drosophila melanogaster 50 CG34229 FBgn0085258 FBtr0112422 2 1 1 178 2R 7729367 7729385 AAGTACTGAAGCTCTACCG 58 7729527 7729545 CCTTAGTTCTGTGAGGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34228 FBgn0085257 FBtr0112421 2 1 1 68 2R 7539547 7539567 GGATATCTGACAAATACACCC 57 7539665 7539683 CTTCTGTCAACCGTTTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 san FBgn0024188 FBtr0088126 1 1 1 106 2R 7248722 7248740 CACAGTTATGTTCGAGCAC 58 7249042 7249060 TATAGAACTCGATGGCTCC 57 NA DesignNoJunction Drosophila melanogaster 50 skf FBgn0050021 FBtr0114569,FBtr0114570,FBtr0088196 3 3 3 64 2R 7117475 7117493 TGTGACATGCTAGAAGCAG 59 7117366 7117447 ATCAGCTTGGAAAGAGCAG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 lola FBgn0005630 FBtr0089363 3 1 26 188 2R 6419760 6419778 TTGAGGATTTGACACTGGA 58 6406866 6419548 GGTTTGTAGAGACATCTTGG 57 NA Drosophila melanogaster 50 CG2269 FBgn0033484 FBtr0088407,FBtr0088408,FBtr0088409 3 3 3 135 2R 5982127 5982206 ATCAACTGGCAGAAGACTC 59 5982305 5982323 TTTAGGGTCTCGTAGGGAG 59 NA Drosophila melanogaster 50 CG12918 FBgn0033477 FBtr0088433 1 1 1 81 2R 5939072 5939090 GTTCGCCTAGTGAAATCTG 58 5938815 5938833 TTGCCTTCAAGTAGTCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1809 FBgn0033423 FBtr0088520 1 1 1 145 2R 5450902 5450989 GGTTATCCTTATCGTGACCA 58 5451097 5451115 TTCTCCTTTAGAAGGGCAC 58 NA Drosophila melanogaster 50 unpg FBgn0015561 FBtr0088586 3 1 1 135 2R 5083258 5083276 CTTGGAGAAACAGCTTCCA 59 5083374 5083393 GTAGTCCTGGTTCATAAGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rya-r44F FBgn0011286 FBtr0088637,FBtr0088639 1 2 4 110 2R 4758430 4758448 AAGAGAAAGTCTACGGTGG 58 4758521 4759736 TCAACGAGAAGCTAATTGTG 58 NA Drosophila melanogaster 50 CG8746 FBgn0033330 FBtr0088714 1 1 1 60 2R 4680636 4680654 CCTCCAAAGTCGAGATCAC 59 4680678 4680696 GTGACGATTGCTTCTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 stmA FBgn0086784 FBtr0088715,FBtr0100111,FBtr0088716 3 3 3 114 2R 4618187 4618266 TGTTTATCCTCGGAATCCAG 59 4618092 4618110 CTAACACGCGAGATTAGCA 59 NA Drosophila melanogaster 50 CG30379 FBgn0050379 FBtr0088851 2 1 1 63 2R 3828676 3828694 TATACGCATGGGATTCGTC 59 3828771 3828790 CAACGTGAACAGTAATTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 tor FBgn0003733 FBtr0112838,FBtr0088938 3 2 3 89 2R 3592980 3592999 CTAACGATGTTCCAGAAAGG 58 3592852 3592930 GCTCCACTTTACTGTTTAGAC 58 NA Drosophila melanogaster 50 dpld FBgn0015930 FBtr0088985,FBtr0088987,FBtr0088986 1 3 3 119 2R 3371061 3371161 TATGTGGGATATCGAGGTG 57 3370960 3370978 TCAATGAGGAACACAATGC 58 NA Drosophila melanogaster 50 CG11112 FBgn0033164 FBtr0113047 1 1 1 60 2R 3288448 3288466 ACACTTCGAGGATAAGGTC 58 3288490 3288508 GCTATCATCGTTGTTACCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111064,FBtr0111063,FBtr0111066,FBtr0111065,FBtr0111101,FBtr0089019 1 6 60 115 2R 3251771 3251789 GGTCAAGTGTAAGATCCCA 58 3249364 3251692 ACTTTCCATCATAGGCGTC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111064,FBtr0111057,FBtr0111100 3 3 60 85 2R 3247004 3247022 AGCACCTTAAGGGAAAGAG 58 3236471 3246958 CTTGTACCATCTAAAGAAAGGC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111087,FBtr0111059,FBtr0111074 3 3 60 94 2R 3244596 3249235 TTGGTCATCACAGAACCTG 59 3244520 3244539 CTTAAGGCTTGACCCATAGG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111090,FBtr0089020 1 2 60 161 2R 3249350 3249368 AAAGTACCTGGTATTGCCC 59 3238787 3249225 TTAAATCCCACAGGCTCTG 59 NA Drosophila melanogaster 50 Or43a FBgn0026389 FBtr0089051 2 1 1 83 2R 3120818 3120931 CGATGGAGATAAGAGTCGG 59 3120753 3120772 TAAAGTAGGAGTAGGACGCA 59 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086205,FBtr0086204,FBtr0086197,FBtr0086201,FBtr0086196,FBtr0086198,FBtr0086202,FBtr0086199,FBtr0086200,FBtr0086203 1 10 11 67 2R 2764942 2764960 AAGTGGAATTGTCTGAGGT 58 2764829 2764847 AAATTCAGCCTGATCGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Eb1 FBgn0027066 FBtr0086128 3 1 5 122 2R 2640924 2640942 AACGATCTCCATCTGATGC 59 2641028 2641693 GGGTATAATCGGAGTTCGT 58 NA Drosophila melanogaster 50 PNGase FBgn0033050 FBtr0085971,FBtr0085972 2 2 2 167 2R 1905650 1905668 AAGAAGTACAGAGATGCGC 59 1905853 1905934 ATTATTGGTGCGCAATACAC 59 NA Drosophila melanogaster 50 CG11163 FBgn0025693 FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053 3 4 4 80 2R 1662572 1662645 TGCATCTCGTTACAGACTC 59 1662510 1662530 TATATCTTGGGCTGGATACGA 59 NA Drosophila melanogaster 50 scarface FBgn0033033 FBtr0086061,FBtr0086060 1 2 2 123 2R 1566825 1566843 GAAAGACGTTTGGAGTTCG 59 1565503 1566741 CCTCTTCATGTATAGATAACGC 58 NA Drosophila melanogaster 50 CG17715 FBgn0041004 FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246 1 6 6 93 2L 22742091 22742164 ATAATGATCATGGCGGGTG 59 22742219 22742239 TTATGGTGTTTCCTAGTCCTG 59 NA Drosophila melanogaster 50 CG41432 FBgn0083999 FBtr0111264 3 1 1 175 2L 22011122 22011141 ATAATGAACCTTGGCATCAC 58 22011279 22011297 GACTTTATACACTCGCCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1416 FBgn0032961 FBtr0085903,FBtr0085904,FBtr0085905 2 3 3 113 2L 21759358 21760490 GAAGAAACTTCATCCAGCAC 59 21760566 21760584 CTGTTTGATGCTATGCCAG 58 NA Drosophila melanogaster 50 CG17472 FBgn0032868 FBtr0081382 2 1 1 61 2L 20634581 20634601 TCTTAGTATTGGCGAATCTGG 59 20634692 20634713 CCTTTCGTGTTCATCATATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40169 FBgn0058169 FBtr0100178 1 1 2 115 2L 20238606 20238626 CGCCTTTAAGTCTTCTTTGTC 59 20243210 20243228 TAAAGCGATGCAAGAACCA 59 NA DesignNoJunction Drosophila melanogaster 50 mRpS18B FBgn0032849 FBtr0081338 3 1 2 159 2L 20096893 20096911 CTTACAAGCAAACCTACGG 58 20096690 20096708 AGCACCAGGTATTCATCAC 59 NA DesignNoJunction Drosophila melanogaster 50 fs(2)ltoPP43 FBgn0004811 FBtr0081317,FBtr0081316 3 2 2 61 2L 19794636 19794660 CTATGTCTACGATCTATATGTTCCC 59 19794599 19794617 CCATCATGTCCACATATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13083 FBgn0032789 FBtr0081241,FBtr0081242 3 2 2 68 2L 19487824 19487842 ATTGTTAACGCAATCCAGG 58 19487873 19487892 GATTTCTAGCTCCACTTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab9 FBgn0032782 FBtr0081206 2 1 1 158 2L 19434714 19434732 GTTCTACAGAGGATCGGAC 58 19434852 19434933 GGAATGTCGTTCTTATTTCCC 59 NA Drosophila melanogaster 50 CG31786 FBgn0051786 FBtr0081057 1 1 1 100 2L 18210627 18210645 TGTCGGCATAACAAGTCAG 59 18210137 18210564 CAGAGGAACCTACTGAAGTG 59 NA Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976 3 4 6 107 2L 17394484 17400407 CTTATACAGATAACAGCAGCG 58 17400476 17400494 CAATGAAGGCAATCTGTCC 58 NA Drosophila melanogaster 50 beat-IIIc FBgn0032629 FBtr0080971,FBtr0080972 3 2 2 91 2L 17191093 17193537 ATGATTGTTGCGTATCTTCC 58 17191021 17191042 CAATTAACCCGAACATAGTCTC 58 NA Drosophila melanogaster 50 Tpr2 FBgn0032586 FBtr0080867,FBtr0080866 2 2 2 94 2L 16505937 16506014 CGCCTGTTTGAAATATCGT 58 16506072 16506090 GTTTCATTACACTGACCGC 59 NA Drosophila melanogaster 50 CG12455 FBgn0028859 FBtr0080823 2 1 2 80 2L 16239065 16239085 CTGGAAGTATTTAGTAGGTCG 57 16239127 16239211 TATTCCATAAATGGCGCTC 57 NA Drosophila melanogaster 50 CG4168 FBgn0028888 FBtr0080716 2 1 1 218 2L 15176145 15176164 ATTTGACAACTGTAACTGGG 58 15171527 15172142 CTGTGCATGAACTCAAACC 59 NA DesignRelaxed Drosophila melanogaster 50 CG4140 FBgn0028535 FBtr0080728 1 1 1 78 2L 15006800 15006818 TCCAATTGTCGGAATACGG 59 15006740 15006758 GTTCCTCGGAGTTGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9254 FBgn0028513 FBtr0080512 3 1 1 60 2L 13596096 13596114 TGCCAAAGTATATGTCGGA 58 13596054 13596072 GAGGAGTAGAGACCATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16826 FBgn0032505 FBtr0080464 2 1 1 60 2L 13348208 13348228 GTCGTAAATGATCTGGAAGTG 58 13348250 13348268 GTTTCTTCTCGTCTATCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Edem2 FBgn0032480 FBtr0080438 2 1 1 80 2L 13193604 13193679 GACATCCTTGGAAATTTCTCC 58 13193720 13193739 ATCAAACTCTGTGAAATCGC 58 NA Drosophila melanogaster 50 CG6153 FBgn0032445 FBtr0080394 2 1 1 61 2L 12693623 12693641 TTTGGCGAAGACATAACAC 58 12693729 12693747 TGAGCTTCTGTGAACTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4705 FBgn0032339 FBtr0080195,FBtr0080196 1 2 2 93 2L 11092644 11092662 ACCCTATTTGTTCCTTCGT 58 11092716 11092792 GTGACCAGTTCTATTTCATTGG 59 NA Drosophila melanogaster 50 CG5727 FBgn0032193 FBtr0079958 3 1 1 60 2L 10210340 10210360 GATCGACTATTTCTGATACCC 57 10210300 10210318 CACTTTCTACGAACTCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gcm FBgn0014179 FBtr0079855 2 1 1 60 2L 9580392 9580410 GATACGTCCAGTTTGACCA 59 9580350 9580371 CATTGTAGTAGCCATAATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7810 FBgn0032017 FBtr0079612 3 1 1 60 2L 8310255 8310273 AGGAACGCTTTCTTAGTGG 59 8310213 8310231 GTGTTATCATCTACGGCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Snx6 FBgn0032005 FBtr0079631 2 1 1 105 2L 8219287 8219370 AGGATCAAGAATCTGGAAACC 59 8219202 8219220 TAAGTAGAGCTTTGGCAGC 59 NA Drosophila melanogaster 50 CG5171 FBgn0031907 FBtr0079440,FBtr0079439,FBtr0114588 2 3 3 122 2L 7404097 7404115 TAATTGGTCGCAGAAAGTG 58 7404267 7404285 GTTTGAATCTGGGCATCAG 58 NA DesignNoJunction Drosophila melanogaster 50 ninaC FBgn0002938 FBtr0079437,FBtr0079436 2 2 2 80 2L 7379582 7379601 AGTTTCATTGGCGATATCCT 59 7379644 7379720 ATACTTGGCATGGAACTCC 59 NA Drosophila melanogaster 50 CG8902 FBgn0031886 FBtr0079424 2 1 1 108 2L 7065042 7065060 GAGGACAGTCAAGTGACAG 59 7064895 7064913 GATGTTCATTCGTCACCTG 58 NA DesignNoJunction Drosophila melanogaster 50 ifc FBgn0001941 FBtr0079179 1 1 1 60 2L 5987732 5987752 TCCGTCCACTGATTATTAACC 59 5987772 5987792 ACCACGGTGTTAATAATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acp26Aa FBgn0002855 FBtr0079155 3 1 1 60 2L 5893408 5893427 AACAGAGGTTACTAACGGAG 58 5893367 5893386 AAGTATATGGAATGGTTCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hel25E FBgn0014189 FBtr0079123,FBtr0079125,FBtr0079124 2 3 3 83 2L 5539760 5539780 ACTTAACGAAGTACAGGATCG 59 5539635 5539717 CGTCCCTCAATGTATGTAGAG 59 NA Drosophila melanogaster 50 CG15439 FBgn0031606 FBtr0077455 3 1 1 60 2L 4450933 4450953 TATGTGGATCGATATTCGCTG 59 4450893 4450911 ACTCCTTGGGTACATTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34177 FBgn0085206 FBtr0112368 3 1 1 123 2L 4434166 4434184 TTAGCATCAAGGATCCCAC 59 4434330 4434348 TTGATGTAGTCACCGTAGC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 l(2)k05819 FBgn0022153 FBtr0077432 3 1 2 164 2L 4395031 4395049 AGATCCTCCAGTGAAACCT 59 4395176 4395252 ATATACTTGGTGACCAGCAG 59 NA Drosophila melanogaster 50 Atet FBgn0020762 FBtr0077427,FBtr0112899,FBtr0112898,FBtr0077426 2 4 4 80 2L 4343789 4343809 CATCTCAACTACTGGTACTCC 59 4343849 4343931 GGAGAAGACAATCTGAAATGG 58 NA Drosophila melanogaster 50 CG10039 FBgn0031581 FBtr0077507 2 1 1 63 2L 4007885 4007905 CACCACTACTACATTTGTACC 58 4008771 4008789 ATTCGCGTAGTAGAGAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Thor FBgn0022073 FBtr0077524 3 1 1 159 2L 3479190 3479208 AAACTTATCTACGAGCGGG 59 3479331 3479349 ACTTGGTCTGCTTGATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31776 FBgn0051776 FBtr0077522 1 1 1 61 2L 3471513 3471534 CCATGAAATCGATTAGTAGTCC 58 3471556 3471680 TACTCGCTTGTAGTTCCTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG9664 FBgn0031515 FBtr0077607,FBtr0077605 2 2 3 89 2L 3292518 3292536 TGAATCGCTCATCACTCAG 59 3292289 3292465 TCTATCAAGGCTGTCTCCT 59 NA Drosophila melanogaster 50 Alp23B FBgn0031461 FBtr0077720,FBtr0077721 3 2 2 94 2L 2810634 2811157 AATGTGCAAGATGAGTGGA 59 2811215 2811233 CAGGTGATTTGGATGAGGT 59 NA Drosophila melanogaster 50 snapin FBgn0031455 FBtr0077737 1 1 1 60 2L 2759346 2759364 TCATAAGCAACGTGTTGGT 59 2759304 2759322 TCTATCAGCTTGTGCAGAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31663 FBgn0051663 FBtr0077893 1 1 1 198 2L 1866134 1866235 CTACTCCTTCATCGAGACTG 58 1865744 1865762 GAGTCCTCCAGTGAAACTG 59 NA Drosophila melanogaster 50 CG17650 FBgn0031365 FBtr0077901 3 1 1 60 2L 1759006 1759026 TAATGACTATCCCATGGAGAG 58 1758966 1758985 ATTATCAAGATCCCTCCTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4577 FBgn0031306 FBtr0077957 3 1 1 192 2L 1139037 1139055 GAGATCGATGACTACGTGC 59 1139266 1139285 CCACGTTGTAGTAGATACCC 59 NA DesignNoJunction Drosophila melanogaster 50 dock FBgn0010583 FBtr0078013,FBtr0078015,FBtr0078014 2 3 3 102 2L 831533 831552 GTATTATGGAGCCATCACCC 59 831616 831722 GTCTCCCATGTTAGTCTCAC 59 NA Drosophila melanogaster 50 Gr21a FBgn0041250 FBtr0078006 1 1 1 97 2L 782369 782388 CTTCTTCACAACGATCATCG 59 782501 782519 AGAACACGATGACGAACAG 59 NA DesignNoJunction Drosophila melanogaster 50 Ets21C FBgn0005660 FBtr0078079,FBtr0112854 1 2 2 169 2L 547990 548008 TGAACTACGACAAGCTGAG 59 547762 547780 GTAGGAACCCAGCATACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4133 FBgn0031257 FBtr0078061 2 1 1 107 2L 457242 457261 TTGAGTAAGCTGAAGAACCG 59 457328 457410 GTTCATTTCATCTTCCATCTCC 59 NA Drosophila melanogaster 50 CG3625 FBgn0031245 FBtr0078136,FBtr0078135,FBtr0113009 3 3 3 118 2L 284780 284798 TATCGACAGGGAGCTAGTC 59 284143 284161 TGTACGAGATGAACAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3436 FBgn0031229 FBtr0078120,FBtr0078119 3 2 2 68 2L 156466 156485 TAGAAGGACATGAGGGAGAG 59 156514 156534 CAGAAGAAAGCAATAACTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437 1 6 10 94 2L 110793 110811 GAGATCACGTCTAAGGCTG 59 110869 111916 AAATCGAAACCCTTGGAGG 59 NA Drosophila melanogaster 50 CR32658 FBgn0040859 FBtr0073628,FBtr0073626,FBtr0073627 2 3 3 141 X 11985679 11985698 CAATTGCATTAACAAGCCAG 58 11985865 11985883 ACCATAGTAATCCCGTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15452 FBgn0031130 FBtr0077292 3 1 1 139 X 20616430 20616708 GATTCGCAACGCATTAAGG 59 20616309 20616327 CGACTTAGTGGATTGTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15743 FBgn0030465 FBtr0073755 3 1 1 76 X 13180853 13180871 TAAATGCCCAGGATGTCAC 59 13180911 13181005 GTACTCGTATAGCTCCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0237 FBgn0027259 FBtr0073541 3 1 1 97 X 11466148 11466225 TATCTGGGATCCTAGCTGTC 59 11466070 11466088 CCGCATGCATTACAAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 antdh FBgn0026268 FBtr0073468 2 1 1 84 X 11062400 11062497 TCAAGATTACGAGCGTCAG 59 11062334 11062352 AGCATTCGATCCTTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071474,FBtr0071478,FBtr0071477,FBtr0071475 3 7 7 104 X 10172050 10172137 CCGAGGCCTTTAGATTCAG 59 10171964 10171982 ACAGCACAAAGTAGCTCTC 59 NA Drosophila melanogaster 50 CG32727 FBgn0052727 FBtr0071056 1 1 1 103 X 7301528 7301605 CTTTCAGAAACGGATGTCG 58 7301672 7301690 TTCGATCCGGATGTTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wuho FBgn0029857 FBtr0070897 1 1 1 60 X 6183175 6183194 GCAACTTTACTTTAACCAGC 57 6183217 6183235 CTTAAGCGTTCGTTCTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34434 FBgn0085463 FBtr0112735 1 1 1 168 X 5509828 5509972 CAAGAACACAAACGTCGAG 59 5509678 5509696 AACTGCATTCCAATCACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or2a FBgn0023523 FBtr0070397 2 1 1 71 X 2141352 2141370 TTCTCTTATCTACGCAGGC 58 2141405 2141493 TATGTGAACCTCATGACCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14798 FBgn0029588 FBtr0089693,FBtr0089694 3 2 2 289 X 1587078 1587096 AAATCGAGCCTCACATCAG 59 1587475 1587493 GACAAAGTCATGGGATCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG13361 FBgn0029532 FBtr0070149 1 1 1 60 X 646259 646356 TAAATTCACGCTACAAGGGA 59 646218 646236 TATTTGGTCTGATTGTCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11148 FBgn0039936 FBtr0089250,FBtr0089249,FBtr0089248 3 3 3 82 4 880999 881075 AAAGTTGATGTACCCACGT 59 880935 880956 AGGTATATTCGGACATAGTCCT 59 NA Drosophila melanogaster 50 Sox102F FBgn0039938 FBtr0100600,FBtr0089252 2 2 2 81 4 822726 823031 AAAGTCATGGGAGAGTGTG 59 822663 822682 TTTACTGAGTCACGACTCAC 59 NA Drosophila melanogaster 50 Asator FBgn0039908 FBtr0089108,FBtr0089109,FBtr0089107 2 3 3 80 4 499215 499233 AACAAACTCCCAAGTAGCC 59 498699 499173 AGCTTCGTATACTGTACATCC 59 NA Drosophila melanogaster 50 Sry-beta FBgn0003511 FBtr0085556 1 1 1 79 3R 25865600 25865671 GATAGAAGGCTGCATTGTG 58 25865713 25865732 GCTGGTTTATGATCTTCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5039 FBgn0039356 FBtr0084900 1 1 1 125 3R 21504866 21504939 CTCCACATTCAGGATGGAG 59 21505025 21505046 GTTTGCAGTAGTAACTAAACCG 59 NA InUTR Drosophila melanogaster 50 CG13640 FBgn0039237 FBtr0084730 3 1 1 60 3R 20687759 20687778 TTCTTCAAGTCCTGGAAGAC 59 20687718 20687742 CATAGTCTTGTACTCCACTATATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6454 FBgn0039187 FBtr0084608,FBtr0084609 1 2 2 80 3R 20179238 20179351 ACCATATCTGACGATGTCTG 58 20179391 20179412 CGATACAGATCGATTAAACACC 59 NA Drosophila melanogaster 50 mask FBgn0043884 FBtr0084563,FBtr0084562 2 2 2 112 3R 20068259 20068390 CATTCAAGAGAACACCAAACTC 59 20068462 20068481 TAGTCTTGTCCAAACTCACG 59 NA Drosophila melanogaster 50 CG4335 FBgn0038795 FBtr0083894 3 1 1 126 3R 16233294 16233371 AATCTACAAGTGCAGTGGA 58 16233186 16233204 TACGATTCCATGGTGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4783 FBgn0038756 FBtr0083823 1 1 1 60 3R 15774212 15774232 CTGGGCTACCATAATAATTGC 58 15774254 15774327 AATAAAGCTTTGCTGGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5013 FBgn0038396 FBtr0083223 1 1 1 181 3R 11875629 11875698 AATACCTGAGCTGCTTCAG 59 11875843 11875861 CAGTAAGTACCACTTGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 beat-Vc FBgn0038084 FBtr0082658 3 1 1 92 3R 8573284 8578156 CAATATGACAGTCGGAGTG 57 8573210 8573229 CAATTTGCCTCGAGATAGTC 58 NA DesignNoJunction Drosophila melanogaster 50 mus308 FBgn0002905 FBtr0082662 1 1 1 80 3R 8535334 8535352 CTTTCTCTACAAAGCGCTG 58 8535213 8535290 AGAGCTATGTAGAAACGCT 58 NA Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082457 1 1 6 66 3R 7417027 7417238 AAGCTAAAGATCCGAGAGG 58 7416979 7416997 AATACTCGTTGGCTACGAC 59 NA DesignNoJunction Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082207,FBtr0082209,FBtr0082206,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210,FBtr0082208 1 8 8 176 3R 5845147 5845238 ATCAATCGCTATCGTCCTG 59 5844989 5845007 ATAGTTGAGCCAGATTCGC 59 NA Drosophila melanogaster 50 Prat FBgn0004901 FBtr0081764 1 1 1 60 3R 3736865 3736884 GAGGTACATACGACACATGG 59 3736824 3736842 CGTTGTTAACAAGCTCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1142 FBgn0037504 FBtr0081559 2 1 1 130 3R 3298562 3298993 TCATCAACAGAGCTGAACG 59 3298450 3298468 TTGCTTAGGGTTCAGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pbprp4 FBgn0011282 FBtr0112867,FBtr0081597 2 2 2 133 3R 3077122 3077140 ATGATAGTTTCGATGGCGA 58 3076952 3077025 CAAGACATTGGTCATCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1041 FBgn0037440 FBtr0081734,FBtr0110774 1 2 2 105 3R 2198948 2199033 GTGGAATTTGACCAAGAACTC 59 2198863 2198881 CAAGGGAATGGTCTTCTGG 59 NA Drosophila melanogaster 50 CG31556 FBgn0051556 FBtr0078612 2 1 1 148 3R 2134650 2134947 GACACAAGTTGGAATTGCT 58 2134520 2134538 CCACTACAGAGTCATCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7448 FBgn0037143 FBtr0078473,FBtr0078474 2 2 2 78 3L 21943709 21943727 CTTTGATGTTGGTCAGAGG 58 21943769 21943839 AAACTCAGCTGCTATTGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG5976 FBgn0036999 FBtr0078199 2 1 2 61 3L 20467698 20467716 AATCTACAATCTAGGCGCT 58 20467738 20468680 TGGGATTGTAGGATATCTTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32428 FBgn0052428 FBtr0078222 3 1 1 61 3L 20465779 20465797 TGTACACCAAGAGATGTCG 59 20464244 20465755 GAAATCATTGCAGTACTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 schuy FBgn0036925 FBtr0074899 2 1 1 200 3L 19979620 19979638 GAATAGACCTTCGTTCGTG 57 19979802 19979883 CCTTTCTGGTTGCTATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8004 FBgn0036920 FBtr0074915 1 1 1 60 3L 19920971 19920990 AATCACATGCAGAACTATGG 57 19920930 19920950 ACTGATAGACCTTCAACAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mtr3 FBgn0036916 FBtr0074918 2 1 1 60 3L 19906616 19906634 TGAGAGTCTAGACAAACCG 58 19906516 19906592 GATGAAGGTGTTTCTGGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4101 FBgn0025558 FBtr0075314 2 1 1 108 3L 16605747 16605765 CTTGCTAATCCGATACGGG 59 16605837 16605855 GGACTCCGGATTACTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7276 FBgn0036499 FBtr0075546,FBtr0075545 2 2 2 60 3L 15491663 15491681 CATTAAGATGAAGGGACGC 58 15491705 15491723 AAGCATTACGTTCACAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32110 FBgn0052110 FBtr0075931 1 1 1 60 3L 12802395 12802416 TGATCGAGGACATAAGAATCAG 59 12802437 12802455 CGATCATGGTGTTCTTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ATPsyn-b FBgn0019644 FBtr0076405 2 1 2 117 3L 9723626 9723644 GATCTACGTCATGGAGCAC 59 9723724 9723835 TTTATCGATCTCGCCATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Lcp65Af FBgn0020639 FBtr0077057 3 1 1 99 3L 6129817 6129835 GTTCCTGATTGTCTTCGTC 58 6129678 6129756 GCCATAGTTAAAGCTTACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11594 FBgn0035484 FBtr0073283,FBtr0073285,FBtr0073284 3 3 3 123 3L 4023613 4023693 AGTGATTACTGGACTGGAC 58 4023450 4023469 TCTACCGTACTGGTAAAGGT 59 NA DesignNoJunction Drosophila melanogaster 50 PebII FBgn0011694 FBtr0072455 2 1 1 79 2R 21061596 21061614 CTAATGACTGGTAGCGCTC 59 21061535 21061553 CTAGAACCTCCTCCAACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yellow-d2 FBgn0034856 FBtr0072012 3 1 1 61 2R 19268918 19268937 GAGATGGACTATACGATCCG 58 19268961 19269033 ATGCTTGTAGTAGACGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30266 FBgn0050266 FBtr0071887 2 1 1 191 2R 18710684 18710705 GAGGATTATACAGTTCAGTCTC 57 18711094 18711192 TTTCTCCATATAGCTGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15657 FBgn0034595 FBtr0071635 3 1 1 116 2R 17035473 17035551 CATTTCGAGCATTGAACAGG 59 17035376 17035394 ATATAGTAGCCTCCCAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Spn6 FBgn0028983 FBtr0086733 2 1 1 65 2R 14014683 14014701 AAGCTCAAGACTGTGAACC 59 14014730 14014748 CTTGACATGGACCTCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 grh FBgn0004586 FBtr0090009,FBtr0090012,FBtr0090011,FBtr0090008,FBtr0090007,FBtr0090010 1 6 6 157 2R 13726937 13727109 ATGCAGACCGATAAGAAGG 59 13727229 13727248 GTATACACCTCCTCGTTCTC 58 NA Drosophila melanogaster 50 RpL18A FBgn0010409 FBtr0086947 2 1 1 156 2R 13434484 13434924 CCAAGGGATTGTTGAAGGA 59 13434346 13434364 TTGAACTTCTTCAGTTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpLP2 FBgn0003274 FBtr0087105,FBtr0087106 1 2 2 93 2R 12473722 12473740 TTAAACATGCGTTACGTGG 58 12473797 12473815 CAGAGCTGAGGATCTTCTC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4282 FBgn0034114 FBtr0087144 3 1 1 87 2R 12211669 12211688 ATCTACCACAATCACGAGTG 59 12211738 12211818 TGTGTTCCTTGAGTTCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8323 FBgn0033903 FBtr0087521 2 1 1 257 2R 10053013 10053094 CATCATCAATTCCTTCCGG 58 10053733 10053751 TTCCTGGAGTAGATCTGAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG13339 FBgn0033871 FBtr0087632 2 1 1 141 2R 9712657 9712728 AGAAAGTTGGACAATTGGG 57 9712833 9712851 ACTATGTTGAGGATGTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 IM10 FBgn0033835 FBtr0087654,FBtr0087655 3 2 2 65 2R 9294848 9294866 CAACACGTTTGTTAACCGA 58 9294954 9294972 AAATTGGGACCACTGATGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG4676 FBgn0033815 FBtr0087743 1 1 1 60 2R 9123702 9123721 CATCTTCAACATCACATCCA 57 9123744 9123814 CTTGCGGATACTAGTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30034 FBgn0050034 FBtr0088097 2 1 1 195 2R 7405813 7405831 GCTGAAAGCTCAATAAGGA 57 7404232 7404250 TAATGATCTTGGTCAGGCA 58 NA DesignNoJunction Drosophila melanogaster 50 Caf1-105 FBgn0033526 FBtr0088310 2 1 1 89 2R 6355424 6355443 ATTCTAGATGACCACAAGGG 58 6355295 6355372 CATTTGTCTATCGGTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8248 FBgn0033347 FBtr0088678 2 1 1 84 2R 4807087 4807106 ATTATTTACCTGTTCGCCCT 59 4806965 4807040 TGTTCTGCGACTTGTAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14752 FBgn0033307 FBtr0088691 2 1 1 95 2R 4478001 4478019 TTATCAGTCACCACCTGAC 58 4478077 4478528 TGAATACTTTCAGGACGGAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 pk FBgn0003090 FBtr0089043,FBtr0089044,FBtr0089042 2 3 3 96 2R 3108296 3108314 CTTATCTACTTCCACCGGG 58 3108374 3108516 CCAGGATAATCTCATCGCA 58 NA Drosophila melanogaster 50 CG9331 FBgn0032889 FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081418,FBtr0081419 2 5 5 237 2L 20826862 20826880 TTCGTAGTGATCGCTTCTC 59 20827142 20827499 CAACAACATTGTCAAGCGT 59 NA DesignNoJunction Drosophila melanogaster 50 Nedd8 FBgn0032725 FBtr0081192 1 1 1 92 2L 18951472 18951490 GGTAGATCGCATCAAGGAG 59 18951338 18951416 TCGTCATTCATTTGCTTGC 59 NA Nonspecific Drosophila melanogaster 50 CG10336 FBgn0032698 FBtr0081095,FBtr0081094 2 2 2 61 2L 18689783 18689802 CCACTAGTTCTATGGCATCC 59 18689823 18689844 GTTGTCATTGAATAGGTCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15293 FBgn0028526 FBtr0080603 1 1 1 193 2L 14109137 14109209 CTTCTGAAGCTGAAGGGAG 59 14108962 14108980 TCCGGACCTAACTCATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5446 FBgn0032429 FBtr0080388 3 1 1 60 2L 12427509 12427527 AGAACTACTCCCTGAACAG 57 12427386 12427485 ACGTATATGGTCAGCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13134 FBgn0032182 FBtr0079968 3 1 1 175 2L 10097806 10097824 AATTTCCATCACTTCGACG 58 10096920 10096938 GATTTGCTGGCATTAACCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG5885 FBgn0025700 FBtr0079900 2 1 1 61 2L 9917571 9917589 TACAACAACGCCATCTACC 59 9917528 9917549 GAGTTCTTCAGGATAAAGAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pvf2 FBgn0031888 FBtr0079423 1 1 1 61 2L 7070929 7074254 AATAATCGTACCAGGGAGC 58 7070886 7070904 TCCTTTGCCATCATCAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)k09022 FBgn0086451 FBtr0079343 3 1 1 89 2L 6859532 6859550 AGATTACGTCTGTTCCACC 58 6859666 6859685 ATAATGTCCACCAAGTAGGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11327 FBgn0031849 FBtr0079316,FBtr0079315 2 2 2 60 2L 6685161 6685179 AGCCCTTGAGTTTCTTGAG 59 6685119 6685139 ATGGGATAGCTAAGCTTAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr FBgn0015623 FBtr0079251,FBtr0079250 3 2 2 80 2L 6344877 6344896 TCGCTGAGTATTGTACTGAC 59 6344939 6345042 ATTTCTCCTTTCCTTCGGG 59 NA Drosophila melanogaster 50 CG9117 FBgn0031766 FBtr0079222 1 1 1 68 2L 6037478 6037496 ATCACGACCTCTACATGGA 59 6037428 6037446 CATTCGAATCTAGGGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)05714 FBgn0010607 FBtr0079051 2 1 2 71 2L 4970769 4971059 GCCAAGAATATGATTAAGGGTG 59 4970719 4970737 TGAAATTATGGAGGCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15629 FBgn0031630 FBtr0077383 2 1 1 62 2L 4814827 4814845 ATTGCCCTAAACTTTGCTC 58 4814868 4815024 GGCTTCTTGATTTATATCCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 S FBgn0003310 FBtr0077993,FBtr0077994 2 2 2 113 2L 1052484 1052574 CCCAAAGAGATTACCATACAC 58 1052391 1052409 CAGCATGATTGTGTAGAGC 58 NA Drosophila melanogaster 50 CG13689 FBgn0031270 FBtr0078071 2 1 1 98 2L 602910 602928 AACAGGAATAGGAGCAAGC 59 602990 603075 TATTTGAGCCACATTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tao-1 FBgn0031030 FBtr0074771,FBtr0074772 2 2 4 200 X 19471224 19471307 AAGAGATACGCTTCCTTCG 59 19471042 19471060 GATAGCTCAACCCACTGAG 59 NA Drosophila melanogaster 50 Pfrx FBgn0027621 FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720 2 8 8 60 X 19402025 19402043 CGTTAAACGAGATCGATGC 59 19402067 19402085 TTCTCCTTGATTTGCTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6340 FBgn0030648 FBtr0074041,FBtr0074039 3 2 4 102 X 15380372 15380390 CATGTTCTCCAACATGGAG 58 15380456 15380474 CTAGAAAGTACGTGGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4004 FBgn0030418 FBtr0073686 2 1 2 60 X 12638835 12638853 AAAGGTACAGGAATCGGTC 58 12638877 12638895 ATCCATCAGATGAAACCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15729 FBgn0030399 FBtr0073664 2 1 1 78 X 12458361 12458379 CCATCTCAACTGGGATCTG 59 12457241 12457259 GATTATGTTGCCACCACTG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG9817 FBgn0030219 FBtr0071509 1 1 1 82 X 10499367 10499385 AGGAGAACAGCATAATGCC 59 10499205 10499223 GTACATCAGGTCGATCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 pod1 FBgn0029903 FBtr0070965,FBtr0070968,FBtr0070967,FBtr0112956,FBtr0070964,FBtr0070966 3 6 6 82 X 6700767 6700786 TGGTTTGATGTACTCCACAG 59 6700828 6700925 GCTCATTGTTCGAGAATATCTC 59 NA Drosophila melanogaster 50 CG12179 FBgn0025388 FBtr0070694 3 1 2 95 X 4529349 4529367 GTCTGTCCTTAAGTCACAC 57 4528414 4528994 GAATGATGATTAGTCCGTCTG 58 NA Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177 3 4 5 149 X 938609 938687 CAATCTGGATAAGGCTCCT 58 938800 938818 CTATCTGGCATACCTGGTC 58 NA InUTR Drosophila melanogaster 50 CG2003 FBgn0039886 FBtr0085870,FBtr0085871 3 2 2 98 3R 27815033 27815051 GAGGAGATTCCTAAGACGG 58 27815170 27815188 GTTTAGCTGGAGGACTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Mtl FBgn0039532 FBtr0085191,FBtr0085192,FBtr0085193 1 3 3 140 3R 23464015 23464106 ATCATTCTAGTTGGCACCA 58 23464210 23464228 CTCCATGTATTTCACAGCG 58 NA Nonspecific Drosophila melanogaster 50 CG31225 FBgn0051225 FBtr0084414 3 1 1 60 3R 19307742 19307760 CTCTGATAACTCAACGGCT 59 19307784 19307802 GCGTCTTAGATAGTGAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31156 FBgn0051156 FBtr0084277 2 1 2 80 3R 18436492 18436511 GGAGGACAACTACAGAATCC 59 18435191 18436450 TTCTCCGACAATACTTTCCA 58 NA Drosophila melanogaster 50 CG7708 FBgn0038641 FBtr0083669,FBtr0083668 3 2 2 103 3R 14509015 14509033 TTCTGTCCTATGTTGCAGC 59 14509229 14509248 CTTGTAATCTGTCTCGTTCC 57 NA DesignNoJunction Drosophila melanogaster 50 fru FBgn0004652 FBtr0083641,FBtr0083643,FBtr0083645 3 3 13 90 3R 14340833 14340851 GAACATCGAAACGGATGTG 59 14261500 14340779 GTCAGTGTTGTACCTAGGG 58 NA DesignRelaxed Drosophila melanogaster 50 Keap1 FBgn0038475 FBtr0083423,FBtr0083424,FBtr0083422 3 3 3 83 3R 12901902 12901980 GAAATTTCACTCAGGTGTGC 59 12901838 12901857 GTTCATCCCTTCGTATCAGG 59 NA Drosophila melanogaster 50 Dad FBgn0020493 FBtr0100160,FBtr0083394,FBtr0083393 2 3 3 82 3R 12894608 12894696 CTTTGAAACCAATAGGGCTG 59 12894740 12894759 TAATGCTGAAGTAGTCGACG 59 NA Drosophila melanogaster 50 Gr85a FBgn0045473 FBtr0082216 2 1 1 60 3R 5821887 5821905 ATCCTAGCTGAGATAACCC 57 5821845 5821863 GGAGTACCATCTTCAGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31453 FBgn0051453 FBtr0081898 3 1 1 68 3R 4386926 4386944 CTCATCTACGAGACAGGAC 58 4386813 4386831 TTCAGAGAACATCAGTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078818 3 1 15 120 3R 1121454 1121474 TAGACGATGAAGACAAGAAGG 59 1120593 1121372 AAACAATAGCGGTCTTTGC 59 NA Drosophila melanogaster 50 CG34357 FBgn0085386 FBtr0112568 1 1 2 132 3R 340837 348723 TATCTATATTGGCGCTGCA 58 340723 340741 TGTGAATTCCAGGAGAGTG 58 NA Drosophila melanogaster 50 CG6597 FBgn0036967 FBtr0074838,FBtr0074837 1 2 2 84 3L 20296376 20296394 ACATGGATCATGGTCAACC 59 20296442 20300945 AATCTGATATGGCGTCTGC 59 NA Drosophila melanogaster 50 l(3)neo26 FBgn0036815 FBtr0075057,FBtr0075056 2 2 2 66 3L 18814990 18815008 TTCAGCCGATTCCAAAGAG 59 18815035 18815056 CCCATCAAGTAAATATCCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32056 FBgn0052056 FBtr0076303,FBtr0076301,FBtr0076302 3 3 3 86 3L 10214550 10214568 TTCTTCGGCATCAATTTCC 58 10214221 10214501 GAACATGGCATCTATGAGGA 59 NA Drosophila melanogaster 50 CG32046 FBgn0052046 FBtr0076408 3 1 2 219 3L 9731226 9731245 TAACGGATCTACGTAGACAG 58 9729084 9730038 AATTGTAGTCTGGACAAACC 57 NA DesignRelaxed Drosophila melanogaster 50 CG8012 FBgn0040832 FBtr0076699 2 1 1 226 3L 8208607 8208625 AGTCATGTTGGTCAAGGTC 59 8208883 8208901 AGTAGTATGGATACGTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eps-15 FBgn0035060 FBtr0072435,FBtr0072434 1 2 3 116 2R 20657578 20659259 TTCGACAATAAGCTCCACC 59 20657480 20657498 TAGCAATGACGATCCACTG 59 NA Drosophila melanogaster 50 CG10339 FBgn0034972 FBtr0072288 2 1 1 62 2R 19967654 19967672 ATCATACAGTCCGACTCGA 59 19967610 19967628 ATACAAGCAGTTCTCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HmgZ FBgn0010228 FBtr0071673,FBtr0071674 2 2 2 165 2R 17585805 17585906 TGAAGGATAAGACCGAGTG 58 17585658 17585676 GAGGACTCTTTCTTCTTGG 57 NA DesignRelaxed Drosophila melanogaster 50 CG3420 FBgn0033100 FBtr0086135 1 1 1 60 2R 2644052 2644070 GAGTTCCTGAAGATCAAGC 57 2643949 2643967 AGTAGTCTCCCGACTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13082 FBgn0032803 FBtr0081251 1 1 1 60 2L 19538749 19538767 CAATCACGTATGATCAGCG 58 19538791 19538809 AAGTTCTCCAGATCAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ddc FBgn0000422 FBtr0081168 1 1 3 60 2L 19119231 19119249 ACATCAAGATCGACATGGA 58 19119189 19119207 AAGTCGACCATTGTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CadN FBgn0015609 FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017 1 6 12 101 2L 17651479 17652674 TCTGATACTACTCGTCTTGGT 59 17651398 17651416 TTGATGATATTCTCGCGCA 59 NA Drosophila melanogaster 50 CG31717 FBgn0051717 FBtr0079977 3 1 1 60 2L 10250970 10250989 TCTGTCGTTCTTCAAATCCC 59 10251012 10251030 TCCATCGCATGATATCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rost FBgn0011705 FBtr0079782 3 1 1 83 2L 8986656 8986674 GGTGTACGGAATGAGTCTG 59 8986522 8986610 TTGCCAAATTCATCTGTTCC 59 NA Drosophila melanogaster 50 fy FBgn0001084 FBtr0079712 2 1 1 84 2L 8401853 8401871 TTCTTGTTGTTTGTGGCAG 59 8401728 8401749 ACTTCTCCTGGAGTATATTAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 3 7 8 167 2L 119224 119296 ATAATGCAGACTGATGTCCTG 59 119020 119038 TTGAGCCATGGTGTTTAGG 59 NA Drosophila melanogaster 50 CG17450 FBgn0040028 FBtr0070057 3 1 2 227 X 21478739 21478757 ATCCAGGTGAAGCATATGC 59 21478407 21478548 GTTGCGATTCATGTTCGAC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG32533 FBgn0052533 FBtr0074786 1 1 1 61 X 19368797 19370159 TTACGACAAGCTGGATGAC 59 19368754 19368772 TATCGTCACTTGAATGGGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG9522 FBgn0030587 FBtr0073986 2 1 1 144 X 14742526 14742690 CATTCTTCAGCGATGTTCC 58 14742400 14742418 ACTATGTTCTCCACTCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34133 FBgn0083969 FBtr0110887,FBtr0110888 2 2 2 96 3R 25698194 25698268 GAAGCTCTACACGCTATCC 59 25698327 25698346 ATGTTCATCTGTTTGAGCAC 58 NA Drosophila melanogaster 50 Sas FBgn0038045 FBtr0082588 1 1 1 74 3R 8252668 8252792 AGAGATCGTTGGAGTTCCT 59 8252830 8252848 GAAAGTTGTTTGCGTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CoVa FBgn0019624 FBtr0082473 1 1 2 243 3R 7645124 7645288 GCGACAGTTATAAACGTGTC 59 7645560 7645578 TGAAGTACTTCTCGTAGCG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Snm1 FBgn0037338 FBtr0078688 3 1 1 83 3R 1382370 1382388 TGCTAACAGAAGATCGCAG 59 1382433 1382510 TAAAGTAATCGACTAGGCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11109 FBgn0037200 FBtr0078552 3 1 2 66 3L 22865434 22865542 CCTTAAAGTGAATTCTGCTGC 59 22865570 22865588 GGTGACTTTGGGAGTAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr76Bc FBgn0036880 FBtr0113180 2 1 1 180 3L 19516472 19519135 CATTATGAGCATCAGGGCT 59 19519279 19519297 CATTGAATCCCTTCTTGGC 58 NA DesignNoJunction Drosophila melanogaster 50 gdl-ORF39 FBgn0028377 FBtr0091756 1 1 1 62 3L 15503331 15503723 GGTTAATGACCAACAATCCA 58 15503748 15503766 TTCTCGGTGACATAGAAGC 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG32141 FBgn0052141 FBtr0075735 3 1 1 60 3L 14197147 14197167 ATTTGCTCTAACAGATCAGGG 59 14197186 14197207 CGCTATATTAATGTGCTTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15829 FBgn0035743 FBtr0076913 2 1 1 72 3L 7122060 7122152 CTTTGAGGAGATCGTCGAG 59 7122188 7122206 GTAGAACTCGAGGAACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7386 FBgn0035691 FBtr0076999 2 1 1 75 3L 6184215 6184291 CGAATGCAAGGTTTGTGAC 59 6184328 6184348 GCTCTTCTCATGAATCTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lcp65Ae FBgn0020640 FBtr0077056 2 1 1 145 3L 6131005 6131083 CTTTCAGTGGTCCTTCGAG 59 6130878 6130896 AGTTGACTTCGTAGGTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9822 FBgn0034623 FBtr0071612 3 1 1 153 2R 17234695 17234782 TAAGCTGACCAAAGACCTC 58 17234560 17234579 ATAGACACTGGCATAGTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18538 FBgn0034324 FBtr0086760 1 1 1 65 2R 14184841 14184914 GATGAAACCATGGTACGTC 58 14184943 14184961 TTGTAGTCGCTGACATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8102 FBgn0034007 FBtr0087393 1 1 2 114 2R 11185411 11185486 AGCAGTGGGAATTTCTACG 59 11185315 11185333 TCATGTCGCAGGATATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18812 FBgn0042135 FBtr0088937 1 1 3 282 2R 3609632 3609650 CAATGCTAGAAGGCATGAC 58 3607269 3607349 ATCAGATATAGCAAGGCCT 57 NA DesignNoJunction Drosophila melanogaster 50 Cyt-b5 FBgn0033189 FBtr0088906 3 1 2 77 2R 3422593 3422847 TTAAATCTCATCCCGGTGG 59 3422888 3422906 CAACGTCCTCAAAGTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lectin-galC1 FBgn0016675 FBtr0081201 3 1 1 66 2L 19417485 19417503 TTACATTGCTGGTCATAGC 57 19417532 19417620 CCTTCGTTTACTTGTATGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14346 FBgn0031337 FBtr0077926,FBtr0077927 2 2 2 186 2L 1368291 1368309 TGAGCACTTACACATACGA 58 1368597 1368615 GTTAGCTCGATCACAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 pncr004:X FBgn0047095 FBtr0091949 1 1 1 60 X 19068744 19068762 TGTTGTTTGATTTCGCGAG 59 19068702 19068722 ACCAACAGTCCATAGATTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1503 FBgn0031157 FBtr0077260 2 1 1 60 X 20976805 20976823 CTACTACGCCTACCTTCAG 58 20976763 20976781 ATTCAGGAAGTGCAAATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1532 FBgn0031143 FBtr0077268 2 1 1 65 X 20898775 20898794 ATAACTATGGAGTGAGCAGC 59 20898013 20898031 CCTTGGAGTGTATGGTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15452 FBgn0031130 FBtr0077292 2 1 1 60 X 20616310 20616328 ATGCACAATCCACTAAGTC 57 20616268 20616288 CATTAATGTACTGGAGTCGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12534 FBgn0031068 FBtr0074794 1 1 1 105 X 19643188 19643206 GATGGATAAGGAGCACCAC 59 19643275 19643293 CTTGAAATCGTTGCAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0156 FBgn0027291 FBtr0074780,FBtr0074781 2 2 2 91 X 19413855 19413945 GAACATTATGCGCATGTCC 59 19413782 19413802 GATACTTCTCTTCGAACTGGA 58 NA Drosophila melanogaster 50 l(1)G0003 FBgn0027335 FBtr0074616 1 1 1 103 X 18531740 18531758 AATTGGTCACGAGAAGTCG 59 18531594 18531673 TTAGCATTAGTTCCTCGCG 59 NA Drosophila melanogaster 50 Bx FBgn0000242 FBtr0074598,FBtr0074597,FBtr0074599 3 3 3 179 X 18461161 18461553 GACTACTTGAGATTGTTTGGC 59 18464621 18464639 TATCTTGTTCTCGCACAGG 59 NA Drosophila melanogaster 50 GalNAc-T2 FBgn0030930 FBtr0074624,FBtr0074625 3 2 2 175 X 18392114 18392132 GATCATCCTGGTGGATGAC 59 18391515 18391533 CCAAGAAGACGATCACCTC 59 NA DesignNoJunction Drosophila melanogaster 50 ari-1 FBgn0017418 FBtr0089507,FBtr0089506,FBtr0089508 2 3 3 121 X 18027372 18027391 TACAATCGCTACATGAACCA 59 18027209 18027288 AGAAACTGCACCTCAATCC 59 NA Drosophila melanogaster 50 CG15373 FBgn0030889 FBtr0112999 1 1 2 80 X 17938961 17939061 CGGGATATGGAAATTGATAGAC 58 17939102 17939120 AAAGGTCCAAACGAAACTC 58 NA Drosophila melanogaster 50 CG6788 FBgn0030880 FBtr0074495 2 1 1 141 X 17782426 17782444 ATGTCGGAAACCATCAAGG 59 17782549 17782567 GACACTCACTTCGAAGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12995 FBgn0030826 FBtr0074401 2 1 2 63 X 17104096 17104114 GTATTTGCGGTCGAATGTG 59 17104051 17104069 ATTTACTGCTACCAACTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAP15B FBgn0030808 FBtr0074378,FBtr0110990 1 2 2 80 X 16847419 16847438 GTTTGATCTTCGTAAGCGAG 59 16847480 16847558 TCTCCTTTAGCACTATGCAG 59 NA Drosophila melanogaster 50 CG4875 FBgn0030801 FBtr0074340,FBtr0074341 2 2 2 82 X 16778983 16779003 TCTAAAGTCCCAAGAGATCCT 59 16779047 16779124 TATTGTCGTCGATGAGCAG 59 NA Drosophila melanogaster 50 r FBgn0003189 FBtr0089734 2 1 2 163 X 16554458 16554476 TTCCAGATACCCAAGAACG 58 16554667 16559231 ACGGATTCCACATTAACTCC 59 NA Drosophila melanogaster 50 CG9723 FBgn0030768 FBtr0074376 3 1 1 63 X 16548650 16548668 ATTATTCCCAGTACGGTGG 58 16548605 16548624 GATTGCTTGTCCTTGTAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13014 FBgn0030759 FBtr0074282 3 1 1 103 X 16482296 16482314 CTTTGGGATCTACTTTGGC 58 16482381 16482399 AGTAACGTCTCGACTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 disco FBgn0000459 FBtr0100384,FBtr0074250 2 2 2 67 X 16107028 16107046 AGAAACGAGTACAGTGCTC 59 16106979 16106997 AAAGTGAATCTTAAGGGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9172 FBgn0030718 FBtr0074151,FBtr0074152 1 2 2 82 X 15880262 15880280 AAGGTCTACGACCAAATGC 59 15880198 15880216 GAGTAATGGTAGTAGCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycD FBgn0010315 FBtr0074163,FBtr0074164,FBtr0074165 1 3 3 60 X 15801699 15801718 GTCTGATGACCGATCTAACC 59 15801596 15801614 ATGTGCAGCATACAATCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6227 FBgn0030631 FBtr0074011 2 1 1 130 X 15241248 15241268 AAGAACTTCTATGTCGAGGTG 59 15241360 15241519 TGTGCCCAAGTCTTAATGG 59 NA Drosophila melanogaster 50 CG15745 FBgn0030469 FBtr0073758,FBtr0073759 3 2 2 61 X 13200447 13200466 TATTCGGATGACATAACCGC 59 13200490 13200508 TGCAGACGAAAGTATTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15744 FBgn0030466 FBtr0073756 2 1 1 149 X 13182934 13183008 TTAAGTTGCTCGACCTGTC 59 13183121 13183139 GTTTCTTTAGCGGCATACC 58 NA Drosophila melanogaster 50 lic FBgn0015763 FBtr0073720 3 1 1 103 X 12985990 12986008 GGTCTTCCTTCACGATCTG 59 12986160 12986179 GAATGACTTTCAGTTGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18646 FBgn0030444 FBtr0073719 1 1 1 80 X 12967046 12967065 TCCATACGGAACAAGAACAC 59 12967108 12968458 GCTGTCCCTGTAATCTGTC 59 NA Drosophila melanogaster 50 p24-1 FBgn0030341 FBtr0073604 1 1 1 69 X 11745766 11745784 TTATGGTCTGGTCATCCCT 59 11745715 11745733 CTCAGCACCATAATCTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2145 FBgn0030251 FBtr0073387 2 1 1 94 X 10822730 10822748 CATCCAAGTGAATCTGCAG 58 10822883 10822901 ATTCAAGGGCTTTCGAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Tango5 FBgn0052675 FBtr0071501,FBtr0071499,FBtr0071500 1 3 3 107 X 10655691 10655709 CACGTTTCTGCTCTATCTG 57 10655534 10655623 CAGATAATATCATCGGGATACG 57 NA Drosophila melanogaster 50 CG15311 FBgn0030182 FBtr0071436 3 1 1 165 X 10083514 10083533 ATTTGGAATCTGCATTGCAG 59 10085244 10085262 TGCCTCTTCAGATAGTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG32685 FBgn0052685 FBtr0071489 1 1 1 83 X 9967962 9967980 ACATCAAACTGGACGTGAG 59 9967432 9967915 ATGCATTATCGTCCGTAGC 59 NA Drosophila melanogaster 50 CG2989 FBgn0030171 FBtr0071416,FBtr0112972 3 2 2 121 X 9924353 9924447 TTGCATAAATGAAGCCAGC 59 9924531 9924550 AATGTGTACACAGGTATGGA 58 NA Drosophila melanogaster 50 l(1)G0320 FBgn0028327 FBtr0071372 1 1 1 60 X 9446549 9446567 AGGAATTCGTGATCGAGAC 59 9446507 9446526 AAGTAGTTGAAGTCCATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12124 FBgn0030112 FBtr0071332 1 1 1 226 X 9131715 9131733 AATATACCCAAGAAGCGGA 58 9131433 9131525 ATCGGAGCTGAATTGATGG 59 NA DesignRelaxed Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0071296,FBtr0071294 1 2 6 83 X 9003012 9005126 AATCGCAGATTTAATCCAGC 58 9005172 9005433 CGTAGGCATTCTGACTCTC 59 NA Drosophila melanogaster 50 CG2004 FBgn0030060 FBtr0071281 2 1 1 204 X 8607808 8607826 GATATTCTTCCGCAACGAG 58 8607429 8607640 GTAGTCTTGACGTACAGGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG11265 FBgn0030049 FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964 2 4 4 142 X 8459065 8459083 AATGATATCGGTCGAAGCA 58 8459189 8459419 ATGATTCGACCCAGTATCG 58 NA Drosophila melanogaster 50 Es2 FBgn0023506 FBtr0071198 3 1 1 60 X 8357165 8357183 AACGTTACCATTGATACGG 57 8357206 8357225 GTTTAGTGGGTATCTTGAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1632 FBgn0030027 FBtr0071170 2 1 1 106 X 8162737 8162822 CTGGGATATGAATCCGTGG 59 8162892 8162910 CGTATGAAGCTGATCTCCG 59 NA Drosophila melanogaster 50 Trxr-1 FBgn0020653 FBtr0071168,FBtr0071167,FBtr0071169 1 3 3 61 X 8140427 8140445 ACATCAAGTCCGTCAACTG 59 8140468 8140558 GATGTACTCCACTTTCTTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 Ubc-E2H FBgn0029996 FBtr0071114,FBtr0071112,FBtr0071113 3 3 3 64 X 7983664 7983684 TGTGAACAAGATCTACCATCC 59 7983620 7983638 TGATAACATCCAGGCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2256 FBgn0029995 FBtr0071115 1 1 1 86 X 7978305 7978323 CTCAAGAAGTTCGACCTGG 59 7978182 7978200 CTCGATTAGCAATGGTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 l(1)G0193 FBgn0027280 FBtr0071130 3 1 2 83 X 7837252 7837726 AGCCATGATAGTGTCTACC 58 7837187 7837207 GCTATATCCGCATATAGTGAG 57 NA Drosophila melanogaster 50 CG12689 FBgn0029952 FBtr0071081 1 1 1 60 X 7479870 7479891 CAACCAAACAGAGTTAATTCCC 59 7479831 7479851 CACATTCTGCATTAGCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9657 FBgn0029950 FBtr0071057 1 1 1 60 X 7315225 7315243 CATTAGATGGTGCCATCAG 57 7315329 7315347 TACGATATGCGATACAGCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG14427 FBgn0029931 FBtr0071010 1 1 1 60 X 6935386 6935404 AAGGTGGATTTCGAGAAGG 59 6935428 6935446 CTAGCAATTGGTAGGTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 2 8 8 173 X 6579447 6579465 ACAACGTCTTCCACTACAG 59 6579602 6579683 AATTCGCTGGAGAAGTCAC 59 NA Drosophila melanogaster 50 Tsp5D FBgn0029837 FBtr0114466,FBtr0070888 2 2 2 147 X 5964737 5964899 CCTGGTATTGTACTTTATGCTG 58 5964611 5964629 ATCGCTGCTGTTATAATGC 58 NA Drosophila melanogaster 50 Tsp5D FBgn0029837 FBtr0114466,FBtr0070888 3 2 2 148 X 5964737 5964899 CCTGGTATTGTACTTTATGCTG 58 5964610 5964629 GATCGCTGCTGTTATAATGC 59 NA Drosophila melanogaster 50 CG15930 FBgn0029754 FBtr0070754 2 1 1 176 X 5210055 5210142 TGATCTAAACTGGTTCTATCGC 59 5209900 5209921 TCCACATACTCTATGTTCACAC 59 NA Drosophila melanogaster 50 HLH4C FBgn0011277 FBtr0070691 1 1 1 60 X 4540329 4540349 CTTAGTCGCTACTATCTGGTC 59 4540289 4540307 CCAGATGCGGATTATTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15579 FBgn0040906 FBtr0070657 1 1 1 233 X 4205674 4205692 CGTATTCCATCGTCCACTC 59 4205459 4205477 CTTAGCATTGCTTTCGCTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Vap-33-1 FBgn0029687 FBtr0070619,FBtr0070618,FBtr0070616,FBtr0070617 1 4 4 95 X 3846066 3846153 GAGGATAAGTTTAAGCCATCCA 59 3846209 3846227 TTCAATGTTGCATTCACGC 59 NA Drosophila melanogaster 50 CG2947 FBgn0029676 FBtr0100247,FBtr0070598,FBtr0070597 2 3 3 60 X 3685529 3685548 GTAACATCACAAAGTACGCG 59 3685569 3685589 GGCACAATCTTCTTGATAAGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2875 FBgn0029672 FBtr0070586,FBtr0070587 2 2 2 67 X 3466639 3466657 ACTTTCTCATGGACTCCCT 59 3466528 3466546 AAAGATTCCCTGAAGAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13021 FBgn0029669 FBtr0070570 3 1 3 109 X 3408477 3409288 TACTGTGGAAACTTGGTGTC 59 3409360 3409378 AATCGTCCCAATCCTTTGG 59 NA InUTR Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514 1 9 14 83 X 3215176 3215194 TCTATATCGCTCCGATTCG 58 3215240 3219968 TCTTTAAACCTTTCGCTAGC 58 NA Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070522,FBtr0070511,FBtr0070514 3 14 14 87 X 3232771 3232789 CTACCAGAGCATGATACCG 59 3232840 3233011 AAGGGTTACTTGAAAGCGT 59 NA Drosophila melanogaster 50 crm FBgn0000376 FBtr0070495,FBtr0070496 1 2 2 80 X 2629130 2629220 GGGATATACTGGATCCGTC 58 2629068 2629086 CGATTTCCTGGAACTTGTG 58 NA Drosophila melanogaster 50 CG11596 FBgn0023522 FBtr0070319,FBtr0070318,FBtr0070320 1 3 3 60 X 1823156 1823174 TAAACCGATCATCGACAGC 59 1823198 1823289 ATCCTTCAGCTCGAAATCG 59 NA DesignRelaxed Drosophila melanogaster 50 Adar FBgn0026086 FBtr0070299,FBtr0100557,FBtr0070300 1 3 3 71 X 1672938 1672956 AATTGGAGTCACAGACTGG 59 1672991 1673138 ATTTCTGTCCATCGACCTC 59 NA DesignRelaxed Drosophila melanogaster 50 pck FBgn0013720 FBtr0070256,FBtr0070255 3 2 3 84 X 1365310 1365329 TTTAAGGACTTCGTGTACCC 59 1365376 1365453 TAACGTAATACTCGTGCGA 58 NA Drosophila melanogaster 50 CG14627 FBgn0040361 FBtr0070199 3 1 1 68 X 1076442 1076460 AGATGGAGACCAACTTCAC 58 1076492 1076510 GAGTAGACGGTAAACTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14629 FBgn0040398 FBtr0070179 1 1 1 60 X 945945 945963 GTCTTCGAGAAGTATTGCC 57 945986 946005 CGTTGAAGTTCTTCAGACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 svr FBgn0004648 FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070082 3 5 7 107 X 396959 398709 GAACTTTGATGGCAACTTCC 59 398778 398797 TGGTGTTCGTATTTAGTCGG 59 NA Drosophila melanogaster 50 CG41558 FBgn0085689 FBtr0114138 2 1 1 106 U 4953229 4953247 TAAGAGACGTGATGAGCTC 58 4953141 4953159 CCATCTCGGAGACAAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41559 FBgn0085690 FBtr0114139 3 1 1 71 U 4512680 4512698 TGTTAAGAACCCACTCGAG 58 4512627 4512646 TAGAACTTGTCATCAACCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40196 FBgn0058196 FBtr0113830,FBtr0113829,FBtr0113831 2 3 3 120 U 1092307 1092325 CAGATCTAAGTTGCGATCC 57 1092152 1092224 TAAAGAGAATTCACTGCTCG 57 NA Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089212,FBtr0089210,FBtr0089215,FBtr0089211,FBtr0089213 2 6 7 151 4 1080458 1081052 ATGAAATGCCTCAGGTTCC 59 1080325 1080343 TTGAGTATCAGCAACTCCG 59 NA Drosophila melanogaster 50 CG32016 FBgn0052016 FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232 2 6 6 143 4 974514 974653 CTCTCAAGAATTGCATTCGC 59 974390 974408 CTTGGTGATTGCGTATCCT 59 NA Drosophila melanogaster 50 Ephrin FBgn0040324 FBtr0089078,FBtr0089075,FBtr0089077,FBtr0089076 2 4 4 82 4 596941 597612 TAACGGAAACGATGACCAC 59 597655 597676 CACCACTATTATAGGTCAGCTC 59 NA Drosophila melanogaster 50 pncr002:3R FBgn0063127 FBtr0091948 1 1 1 60 3R 2525497 2525516 GAACTAAGAGCTAAGGCTCC 59 2525456 2525477 ATGAGTACCAATAGGTGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 1 14 14 90 3R 27691897 27691915 ATACTGCACCAGATCTTCC 58 27691743 27691843 GATATTGGATGAGGGCCTG 59 NA Drosophila melanogaster 50 CycG FBgn0039858 FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799 2 5 5 91 3R 27426460 27426478 ACATCAAGGAGTCGTACAC 59 27426317 27426407 ATCAGGAATCCTCATGTACTG 58 NA Drosophila melanogaster 50 spn-F FBgn0086362 FBtr0085760 3 1 1 60 3R 27081516 27081535 CAGTGAGGAACTAGGTTACC 59 27081558 27081576 TGGTTCACTAGTGGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 su(rdgB)69 FBgn0086704 FBtr0085782,FBtr0085781 3 2 2 154 3R 26987045 26989273 CATACTGCTGAGATACGGC 59 26986909 26986927 CAATCATGACCACATTGCG 59 NA Drosophila melanogaster 50 Aph-4 FBgn0016123 FBtr0085734,FBtr0085733 2 2 2 95 3R 26877609 26877627 CGATCCCATGTTCTACGAG 59 26877746 26877764 ATGTTGGAGCTGTTCTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31012 FBgn0027598 FBtr0085704,FBtr0085706,FBtr0085707,FBtr0085705 1 4 4 135 3R 26650595 26650683 AGTTCCTATGACTGGTAACCT 59 26650778 26650798 TTCAGGTAGTTGATTAGCACC 59 NA Drosophila melanogaster 50 PH4alphaNE3 FBgn0051017 FBtr0085667 3 1 1 101 3R 26430476 26430553 AATGTTCGGTTCAACTCCA 59 26430617 26430636 GGTTATCCACTGTAATGCCT 59 NA Drosophila melanogaster 50 Axn FBgn0026597 FBtr0085554,FBtr0085553,FBtr0085555 3 3 3 95 3R 25858740 25858816 CACCTTTCAGGTGATACCTC 59 25858874 25858892 AACTTGGGTATCAGCAAGG 59 NA Drosophila melanogaster 50 CG15523 FBgn0039727 FBtr0085505 3 1 1 80 3R 25768409 25768489 TTCCTATGCCAGTAAGCAG 59 25768532 25768551 AATGCAGGAAAGTTTCATGC 59 NA Drosophila melanogaster 50 ppk19 FBgn0039679 FBtr0085451 3 1 1 112 3R 25499302 25499322 CACTTCGTTGACTTATAACCG 59 25499396 25499463 GAACTCCATCAATGGGAGG 59 NA Drosophila melanogaster 50 Brd8 FBgn0039654 FBtr0085394 3 1 1 63 3R 25050948 25050966 GAAAGTAGCTCCCAAGGAC 59 25050992 25051011 GATCTATTAGTTCCGGCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11899 FBgn0014427 FBtr0085390 1 1 1 179 3R 25026879 25026897 GTTTGGCGTTATCTATGCG 59 25027040 25027114 ACATAGATGCCAAAGGTCG 59 NA Drosophila melanogaster 50 CG14509 FBgn0039647 FBtr0113303,FBtr0113304 1 2 2 146 3R 25004530 25006888 AGAGTTCGATTATGCCAGTC 59 25004403 25004421 TCATAGTGATTGGTGACGG 59 NA Drosophila melanogaster 50 CG1957 FBgn0027873 FBtr0085358,FBtr0085357 3 2 2 60 3R 24862476 24862495 ACGATGAGATTCCTATCCAC 58 24862517 24862536 TTAAAGTCGGACAGTTTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Moca-cyp FBgn0039581 FBtr0085286,FBtr0085287 1 2 2 110 3R 24168519 24168608 CGAGATACCAGAGGTATCGA 59 24168681 24168699 TGATCTTTGCCTCGATCAC 59 NA Drosophila melanogaster 50 CG33213 FBgn0053213 FBtr0085271 3 1 1 60 3R 23744605 23744623 GGTATTTACCAGAGGAACG 57 23744563 23744581 AATTTGTCGGAATTGGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12428 FBgn0039543 FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236 3 5 5 150 3R 23529755 23529773 ATCCGATGTACACCAAGAG 58 23529567 23529642 TTAATGAACACAGCTTCCGA 59 NA Drosophila melanogaster 50 CG6330 FBgn0039464 FBtr0085085 3 1 2 148 3R 22777615 22778738 AAAGGATAACGCGGTACTC 59 22777130 22777504 CATGCAAACGAACTTAACGT 59 NA Drosophila melanogaster 50 Tl FBgn0003717 FBtr0085059 2 1 2 148 3R 22652406 22663446 AGTTCTGAGCAAGTGAACC 59 22663558 22663576 CTATGCTCATCTCACTGCA 59 NA InUTR Drosophila melanogaster 50 boss FBgn0000206 FBtr0084949 2 1 1 99 3R 21790534 21790554 TTGGCAATAAGCTAGCTAGTC 59 21790615 21790754 CTGTTTGGTAAGTCTGCCA 59 NA Drosophila melanogaster 50 CG8934 FBgn0039391 FBtr0084945 1 1 1 68 3R 21739496 21739514 TATCCGCAACCTACTACGA 59 21739603 21739621 GAACCAATTGATCCTTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17370 FBgn0039381 FBtr0084909,FBtr0084910,FBtr0084911 3 3 3 90 3R 21711544 21711628 GGAACCAACGGATAAATTCG 59 21711680 21711699 GAAGAACATGATGAGCAGTG 58 NA Drosophila melanogaster 50 CG11891 FBgn0039309 FBtr0100221,FBtr0100223 3 2 3 81 3R 21098640 21098715 CAGATCCTTCTATGCTGCC 59 21098760 21098778 ATCCATTGATGCCTCTTCC 59 NA Nonspecific Drosophila melanogaster 50 CG11854 FBgn0039299 FBtr0084811 1 1 1 147 3R 21068233 21068251 ATTCACAAGGGATCTCAGC 59 21068362 21068442 CTTTGTTCTAGTGAGGCGT 59 NA Drosophila melanogaster 50 CG31108 FBgn0051108 FBtr0084802 2 1 1 95 3R 20941041 20941059 AATTTACTCTGGACGGGTG 59 20940902 20940982 CATTTCGTAGGACCTAGGG 58 NA Drosophila melanogaster 50 CG34349 FBgn0085378 FBtr0112558 1 1 2 94 3R 20883617 20885942 AGTGATGAATGTCACAGATCTC 59 20885997 20886015 CCAAACTGTTTGTGCACTC 59 NA Drosophila melanogaster 50 CG11120 FBgn0039250 FBtr0084717,FBtr0084716 3 2 2 129 3R 20749906 20749925 GAAGACATTGATAAGCGCTG 59 20750067 20750148 GTATAACACCTCTATTGGGCT 58 NA Drosophila melanogaster 50 CG18669 FBgn0040599 FBtr0113329 3 1 1 176 3R 20192827 20193111 CAGCTGATGAGTCAAATCAC 58 20192670 20192688 CCACAATTGACGCTTTCTG 59 NA Drosophila melanogaster 50 CG5706 FBgn0039175 FBtr0084637 3 1 1 75 3R 20077895 20077913 CTCTGTTTAGAGGGCTTGG 59 20077772 20077790 CCACAAACTGGAACTTAGG 57 NA DesignNoJunction Drosophila melanogaster 50 p38c FBgn0046322 FBtr0084582 3 1 1 60 3R 19974969 19974987 GGATCTTATTGAGCCACAC 57 19974927 19974947 GAAGTTCTGATCATAGACTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 KrT95D FBgn0020647 FBtr0084508,FBtr0084507,FBtr0084506 2 3 3 104 3R 19824628 19824646 GGATAAGGAGCGTGATCTC 59 19824481 19824560 TCAATGTACACTCGCAGTG 59 NA Drosophila melanogaster 50 CG33108 FBgn0053108 FBtr0084504 3 1 1 60 3R 19822900 19822918 TGTAGGTTATCTGGTGGAC 57 19823000 19823018 AGATTTACCATGACGAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 eIF-3p66 FBgn0040227 FBtr0089622 3 1 1 137 3R 19507104 19507122 TTAAGACTGGAGACCAGGA 59 19507223 19507317 CTACCAGGACAATATCGCT 58 NA Drosophila melanogaster 50 CG4467 FBgn0039064 FBtr0084390,FBtr0110801 3 2 2 90 3R 19057621 19057639 GAAGTGGATCTTTCCAGTC 57 19057480 19057568 CACATTGAAGGTTACATCCA 57 NA Drosophila melanogaster 50 CG7054 FBgn0038972 FBtr0084254 2 1 1 63 3R 18291005 18291023 CATAGTACCCGATGTGCTG 59 18291050 18291068 GTCATCGCCATAGATGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5778 FBgn0038930 FBtr0084182,FBtr0113265 2 2 2 60 3R 17911480 17911498 GGTGGAGGATACTACAACG 59 17911438 17911456 CCGAATATACTGGACGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067 2 1 22 80 3R 17200833 17200851 CAGTCCCAGAACTACAGTG 59 17181269 17200791 TTCACCTAAATCTTGAGCCTC 59 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084073 2 1 22 81 3R 17200833 17200851 CAGTCCCAGAACTACAGTG 59 17198791 17200788 TGATCTCCGTATCTTGAGC 58 NA Drosophila melanogaster 50 CG31207 FBgn0051207 FBtr0084044 2 1 1 60 3R 16872077 16872097 TGAAGATATACGAGCTAACCC 58 16871973 16871991 TTGTCTAGCCAGAATACCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17838 FBgn0038826 FBtr0113255,FBtr0083959 1 2 8 88 3R 16628266 16631681 TTTACCAGTAGTCGGTAAACG 59 16631731 16631749 TTCCTATTAAACCGCTCGG 59 NA Drosophila melanogaster 50 mun FBgn0053518 FBtr0091463 2 1 1 106 3R 16215762 16215780 ATAACAGTAATCCGGCCAG 59 16213337 16215693 CAACTTTAATCTGCACTCGC 59 NA Drosophila melanogaster 50 CG10887 FBgn0038773 FBtr0083864 3 1 1 129 3R 15940786 15940860 CATTCAATAGGAGGAGCCC 59 15940950 15940971 GATTCAGGAACACTATTTGCTG 59 NA Drosophila melanogaster 50 CG4462 FBgn0038752 FBtr0083850 2 1 1 178 3R 15748417 15748435 TGGTACCGAACACTATTGC 59 15748027 15748102 ATCAGCATCCATTGAGTCC 59 NA Drosophila melanogaster 50 CG6231 FBgn0038720 FBtr0083810,FBtr0083809,FBtr0083807,FBtr0083808 1 4 4 80 3R 15444855 15444873 CGACTTTAATCGCTACCAG 57 15444732 15444811 TGCGTAAAGTAATGCATCG 58 NA Drosophila melanogaster 50 CG5316 FBgn0038704 FBtr0083760,FBtr0083758 2 2 3 80 3R 15230458 15230570 GGGATATAACTCAGCTAACCG 59 15230610 15230630 GCTTCTCGATGATTTGATTCG 59 NA Drosophila melanogaster 50 CG6026 FBgn0038676 FBtr0083715 2 1 1 60 3R 14867672 14867691 CCATGCACAACCATTAAGTC 59 14867714 14867732 CTTGGGAAAGACAACAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12333 FBgn0038617 FBtr0083655 1 1 1 130 3R 14227280 14227355 AAGAAGGGCCATTCTTCAG 59 14227168 14227186 ACCACGACTGAAAGATGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31235 FBgn0051235 FBtr0083588 3 1 1 97 3R 14143407 14143425 TTCATGAAGAATGCCTACG 57 14143196 14143347 TCGCAATCATTGAAGTACTC 57 NA Drosophila melanogaster 50 CG14322 FBgn0038532 FBtr0083476 3 1 1 151 3R 13490222 13490240 ACGTGTTTCACCTAGTCAC 59 13490355 13490435 CTCCAGATTCAAGAGCGAG 59 NA Drosophila melanogaster 50 CG14332 FBgn0038509 FBtr0083446 3 1 1 61 3R 13247828 13247846 GATCGTATTTGTCGTCGGT 59 13247785 13247803 AATAGCTCCAGACTGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gish FBgn0011253 FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333 1 6 8 90 3R 12118541 12119712 CTATTAGGATCACATGCCGA 59 12119765 12119783 AAACCATGGCATTGTAACG 59 NA Drosophila melanogaster 50 Sra-1 FBgn0038320 FBtr0083085 3 1 1 88 3R 11161917 11161935 CAGAATAACACTGCACGTC 58 11161986 11162066 TTCGAATGAAACGATTCGTG 59 NA Drosophila melanogaster 50 Su(var)3-9 FBgn0003600 FBtr0083131,FBtr0083130 2 2 3 91 3R 11085095 11085179 CATTGCTGGCAATGAATCC 59 11085022 11085043 GCAAGATCAGAATCTGTTTCAG 59 NA Drosophila melanogaster 50 CG34316 FBgn0085345 FBtr0112514,FBtr0112515 3 2 2 83 3R 11056745 11056763 CAAATCCTTATACACCGCC 58 11056810 11056894 TTTGTAATGGAGGTTTCGG 57 NA Nonspecific Drosophila melanogaster 50 CG6687 FBgn0038299 FBtr0083140 3 1 1 140 3R 11032952 11032970 TTAACCGTGTCATATCCCG 59 11032768 11032849 CCATTAAGCTGAGGATAGGG 59 NA Drosophila melanogaster 50 CG7530 FBgn0038256 FBtr0083020,FBtr0083021,FBtr0083019 1 3 3 103 3R 10551833 10551851 TTCAACCCGTACATTCGTC 59 10551639 10551767 CTCCAGATGTTGATCGTCTC 59 NA Drosophila melanogaster 50 CG9920 FBgn0038200 FBtr0082917 1 1 1 73 3R 9923385 9923403 ATACGGTGGAACTAAGGTC 58 9923330 9923348 TAGCAAGGATATCGCTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9286 FBgn0038183 FBtr0082830 3 1 1 188 3R 9607072 9607149 CGGATTTGATCATAGCCCA 59 9607298 9607319 CCAGTATGTAGGTCCTTAACTG 59 NA Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082803,FBtr0082807 2 2 8 81 3R 9490587 9490607 CTAGGCAGACAATCTAAACTC 57 9490649 9491186 ATCCTTGAGATCTTAATGCG 57 NA InUTR Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082802,FBtr0082803,FBtr0082807,FBtr0082801,FBtr0100261,FBtr0082805,FBtr0082804 3 7 8 147 3R 9487574 9487894 GCTTTGTGGAATTCGAAGAC 59 9488069 9488087 CCATATCGATCGTCGTAGC 59 NA Drosophila melanogaster 50 CG14370 FBgn0038158 FBtr0082788 3 1 1 61 3R 9413914 9413932 CAAGCATCTGGACAATGGA 59 9413956 9413975 CAATTCTTAGCGGAAAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14375 FBgn0038147 FBtr0082762 2 1 1 60 3R 9215472 9215779 GAAATCATGGTTTAACCGAC 57 9215431 9215449 GGGATAATCAAGTTCACCC 57 NA DesignRelaxed Drosophila melanogaster 50 CG14380 FBgn0038124 FBtr0082733 2 1 1 82 3R 9014572 9014590 GAATTATTCCAGGACCCGT 59 9014700 9014718 TAGAAGCGCAGTTAAACAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG8508 FBgn0038123 FBtr0082783 3 1 1 61 3R 9011794 9011813 TACTGGAGAAACCTACATGC 59 9011752 9011770 TTTCGGTATCGTCAATGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pp1-87B FBgn0004103 FBtr0082595 3 1 1 61 3R 8251194 8251212 TACTACGATCTGTTGCGTC 59 8251151 8251169 AACAGGTAATTCGATTCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10013 FBgn0038012 FBtr0082567 2 1 1 60 3R 8150289 8150310 CTGATATAGACTTACCCATGGA 58 8150331 8150349 ACATTCATGTCCACATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 svp FBgn0003651 FBtr0082564,FBtr0082562 2 2 3 123 3R 8126351 8126617 CCTCACAAGTCATTGAGCA 59 8126704 8126722 CACATCGAAGGCAGATAGG 59 NA Nonspecific Drosophila melanogaster 50 CG12256 FBgn0038002 FBtr0082621 1 1 1 132 3R 8051368 8051386 ATTCCAAGTGCAAGGAGAC 59 8051192 8051212 TGTTTATAGGACTCACCACTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG18347 FBgn0037969 FBtr0082484 1 1 1 110 3R 7796689 7796766 TGTATCACTAAGACACTGAAGC 59 7796837 7796855 ATAGTAGACCGTTTGAGCG 59 NA Drosophila melanogaster 50 CG12213 FBgn0037968 FBtr0113223,FBtr0082510 2 2 3 80 3R 7791205 7791283 GGATGAAGATCAAGATGAGGA 58 7791145 7791166 ACTTAGTGTCTAATAACCTCGC 59 NA InUTR Drosophila melanogaster 50 Taf12 FBgn0011290 FBtr0082440,FBtr0082441 3 2 3 280 3R 7504916 7504934 TGTCGGATCTCTTTACCAC 58 7504583 7504672 TTTGGTAAGCATGGGAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 Tctp FBgn0037874 FBtr0082344 1 1 1 60 3R 7036109 7036130 ATCTACAAGGATATCATCACCG 59 7036151 7036169 CCAGCTTCATCTTGTAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ugt86Da FBgn0040259 FBtr0082338 3 1 1 77 3R 6984037 6984055 CTATTAGCTGGAACACCGA 58 6984165 6984183 CACTAAACTTCAGCAGTGC 59 NA DesignNoJunction Drosophila melanogaster 50 pont FBgn0040078 FBtr0082226 3 1 1 124 3R 6089059 6089077 CCTACCTACACAAGTCCCT 59 6089226 6089244 CAGATCTAGCGGAATTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210 3 5 8 82 3R 5834567 5835034 TCTACGAAGGTTCAAACCG 59 5834503 5834521 GAGTCGGTGGATATCTCAG 58 NA Drosophila melanogaster 50 CG12807 FBgn0037772 FBtr0082171 3 1 1 192 3R 5825469 5825561 AACGACTTGCAGAATATGG 57 5825923 5825941 TCACAGAGATCTGAATGGG 58 NA Drosophila melanogaster 50 dmt FBgn0016792 FBtr0082086 1 1 1 153 3R 5539290 5539593 CATTTGCCGATAAGCAACC 59 5539710 5539728 TTCTTCTCCGGAGAATCCA 59 NA Drosophila melanogaster 50 CG9396 FBgn0037714 FBtr0082111 3 1 1 85 3R 5397005 5397023 AATGGACTTATCAAGGCCT 58 5396880 5396956 AATATGGTCTTGGGTCCTG 58 NA Drosophila melanogaster 50 CG16790 FBgn0037713 FBtr0082112 1 1 1 90 3R 5395399 5395417 GATGAATTCTCCCGATCCT 58 5395266 5395284 CCTCATTCGTGTAGATCCG 59 NA DesignNoJunction Drosophila melanogaster 50 Vps16A FBgn0037674 FBtr0081979 2 1 1 80 3R 5094882 5094901 GATACAGAGTTGATCACCCA 58 5094943 5095030 GTCCCTAATAGTCATGTGCA 59 NA Drosophila melanogaster 50 CG11982 FBgn0037653 FBtr0081965 1 1 1 60 3R 4833149 4833167 CAATGTGCAGATCAATGCC 59 4833191 4833209 GTCCCAGCATATAGAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33191 FBgn0053191 FBtr0081941 2 1 1 60 3R 4604667 4604688 CACTTGATAATCTATGCTCCAG 58 4604628 4604646 CATCGGATTCATCCGACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pif1A FBgn0027540 FBtr0091714,FBtr0091715 3 2 2 98 3R 4612636 4616239 GATGTCAAGATAACCCAACTC 58 4612558 4612576 ACTGCTCTTCATTGTTGTG 58 NA Nonspecific Drosophila melanogaster 50 CG34135 FBgn0083971 FBtr0110905,FBtr0110904 2 2 2 60 3R 4576505 4576525 CAGGAGTGATGTATTTACTGG 57 4576399 4576417 AAGTGAATGATCATGAGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11035 FBgn0037544 FBtr0081816 1 1 1 60 3R 3858441 3858459 CAGGAACCAAGGAAGTGAG 59 3858399 3858419 CTCATAAGCCTGATTGATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14607 FBgn0037488 FBtr0081575 1 1 1 60 3R 3069117 3069138 GCCTATATCTATGATTACTCCG 57 3069158 3069177 TGTTGGTATTCGATGTTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MAGE FBgn0037481 FBtr0081606 2 1 1 60 3R 2980371 2980390 TCGAAACTGTACGTTATGCT 59 2980330 2980348 AGTAGCCATGTTCTTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31248 FBgn0051248 FBtr0081564 1 1 1 109 3R 2956077 2956149 AAATTCAGTATGCACCACC 57 2956221 2956240 CACTTCGATCATAAAGTCCA 57 NA Drosophila melanogaster 50 Taf1 FBgn0010355 FBtr0081685 2 1 3 132 3R 2480358 2480376 GATTGACCTAGAGGCTCAC 59 2480796 2480941 CATGGATTCATCTTGCTGC 59 NA Drosophila melanogaster 50 Osi20 FBgn0037430 FBtr0081708 1 1 1 60 3R 2166503 2166521 GATTCTGTCCAAGATTGCC 58 2166543 2166563 CTGGATAAGGTTGTAGATCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or83a FBgn0037322 FBtr0078797 2 1 1 124 3R 1224187 1224205 CTGCATATGGTGCTTTGTG 59 1224028 1224099 TGCAATTGATTCAGTTCCG 58 NA Drosophila melanogaster 50 CG1172 FBgn0037321 FBtr0078792 2 1 1 157 3R 1220304 1220322 GACGAGTTCTGGGATACTG 59 1220443 1221256 TCTGTAAGGTAGCCATTGG 58 NA Drosophila melanogaster 50 CG12000 FBgn0037314 FBtr0078805,FBtr0078806 1 2 2 68 3R 1183098 1183116 CAAGGACAGGGACTTTACC 59 1182977 1182995 TAGTAAAGCACCTCCATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2604 FBgn0037298 FBtr0078829,FBtr0078828,FBtr0078830 3 3 3 60 3R 1047615 1047634 CTAAGACCGGACTAATTAGC 57 1047574 1047593 AGAATCTCAAACTTGATGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1116 FBgn0037297 FBtr0078775,FBtr0078774,FBtr0078776 3 3 3 211 3R 1045991 1046009 CAAGATCACCATTGCTACG 58 1046184 1046267 CGGTTACGTTCTTAAGGTG 58 NA DesignRelaxed Drosophila melanogaster 50 cno FBgn0000340 FBtr0078832 1 1 2 110 3R 1009579 1009597 TCACCAGGAACTCTTTCTG 58 1008596 1009505 GACGCTCGATATCTAGCAC 59 NA Drosophila melanogaster 50 atms FBgn0010750 FBtr0078868 1 1 1 213 3R 602416 602434 TACTTCTTCGTGATGCGTC 59 602670 602688 CTTCTTCCACGATCTCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9769 FBgn0037270 FBtr0078892 3 1 1 60 3R 539109 539127 GCTGCTAGACCTTATCCAC 59 539067 539085 GAACATCTGAGTGAACTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33927 FBgn0053927 FBtr0091931 1 1 1 268 3R 516124 516142 TCAGTGTCGTTTAAAGGCA 59 515816 515834 CCATTATATGCACTGGACC 57 NA DesignNoJunction Drosophila melanogaster 50 CG41465 FBgn0084026 FBtr0111215 2 1 1 60 3R 287850 287871 TTCTTATGCATTATCTCGAGGG 59 287891 287910 GTTGACTCCCAATATACCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1090 FBgn0037238 FBtr0078912 3 1 2 111 3R 189420 189439 GCCTTATCCTCCACATACTG 59 189513 189951 GATAGCTTTAGCTCCTCGC 59 NA Drosophila melanogaster 50 CG41462 FBgn0084023 FBtr0111218 1 1 1 129 3R 179817 179835 GAGGCAAAGTGAACAATGC 59 179925 179946 CTTTCTATTCAGAAATCCAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113337 2 1 15 249 3R 117722 117740 AAACGAAGATAGAAGGCCC 59 121000 121299 TGATGTTGTACTTATCGCG 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Arf79F FBgn0010348 FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572 3 6 7 86 3L 22862823 22862842 ATTAGCTTTACAGTGTGGGA 58 22862563 22862777 GATAAGACCTTGTGTATTCTGG 58 NA Drosophila melanogaster 50 CG11449 FBgn0037162 FBtr0078503 1 1 1 74 3L 22448587 22448607 ACGAGCTGAAGTATCTAAAGG 59 22448643 22448661 CTATGGCTGCTTCCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 olf413 FBgn0037153 FBtr0089664 2 1 1 86 3L 22222253 22222365 TCAAATTACGCCAGATACGA 59 22222414 22222432 GTCGAAAGTCCTGATAGGC 59 NA Drosophila melanogaster 50 CG33292 FBgn0053292 FBtr0078428 1 1 1 60 3L 21652116 21652134 GAAATCCGAGTGTGATTGC 59 21652158 21652176 ATCATCCGCATTACCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7634 FBgn0037101 FBtr0078371 3 1 1 123 3L 21560464 21560547 CGAAAGTCTATTGAAGAGGC 58 21560633 21560651 GATCTAGAGCTTCACTGGT 58 NA Drosophila melanogaster 50 Aef1 FBgn0005694 FBtr0078349 2 1 3 107 3L 21428135 21428153 CAACAACATCAGAGAAGCG 59 21428224 21428304 GGATTAGGTAGTCTCGGTG 58 NA InUTR Drosophila melanogaster 50 CG33054 FBgn0053054 FBtr0078317,FBtr0078316 2 2 2 60 3L 21190926 21190944 CTACCTAGTAACCAAGCCT 57 21190884 21190903 AGATGCTTGTACAGATTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32432 FBgn0052432 FBtr0078268 1 1 1 80 3L 20840211 20840289 GTCAGAATTGAGATCTTTGAGC 59 20840152 20840170 TTGGTTAGAGGAGTTGCAC 59 NA Drosophila melanogaster 50 CG13255 FBgn0040636 FBtr0078263 3 1 1 101 3L 20831558 20831576 TCATACTGGTCAATGTGGT 58 20831641 20831659 CCATGATGGAGGTCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS26 FBgn0036774 FBtr0075121 1 1 1 86 3L 18100363 18100384 CCAAGAACTATATCACTAGGGA 58 18100431 18100449 TATCGATGGCGAAATTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Prestin FBgn0036770 FBtr0075153 1 1 1 80 3L 17893991 17894068 GAATTGTAAACCTCCTAATGGC 59 17893932 17893950 TGAATCCATTCACCAGAGG 58 NA Drosophila melanogaster 50 CG5535 FBgn0036764 FBtr0075158,FBtr0075159 2 2 2 255 3L 17847364 17847452 GAATACGCAATTGGCTCTG 59 17847127 17847145 TAATGACGAACAACACGAC 58 NA DesignRelaxed Drosophila melanogaster 50 cln3 FBgn0036756 FBtr0075167 1 1 1 89 3L 17803370 17803448 CGCGATACAATAAGAATGTG 57 17803300 17803318 ATCTCAAGCTAGCATAGCT 57 NA Drosophila melanogaster 50 CG7542 FBgn0036738 FBtr0075181 3 1 1 62 3L 17543191 17543209 AAACATCGGTGATGAGTCC 59 17543234 17543253 ATAATACCCGACTTCTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 frc FBgn0042641 FBtr0075228 1 1 1 60 3L 17425341 17425360 GCCTAATGTACTACAACTCG 57 17425300 17425318 GTAACATAGTTGAGGGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cad74A FBgn0036715 FBtr0075240,FBtr0075239 2 2 2 95 3L 17363253 17363333 CGAATGTCACAGAGAATGC 58 17363176 17363194 AAGTAATGGTTCCGGATGG 59 NA Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 3 8 8 172 3L 16956749 16956767 ACGTCAAGTACAAGGACTG 59 16956901 16956979 CAATAGACCCTTGTGAATCAC 58 NA Drosophila melanogaster 50 CG13030 FBgn0036669 FBtr0075334 2 1 1 60 3L 16853229 16853247 CCTTGGAGGCCTATAATCG 59 16853270 16853289 TTCTCACGGATTGATCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4877 FBgn0036624 FBtr0075386,FBtr0075387 3 2 2 84 3L 16382650 16382670 CATCTGCTAGATAGCAATCCA 59 16382716 16382792 CCATGTCCTGGTTACTGTC 59 NA Drosophila melanogaster 50 CG4962 FBgn0036597 FBtr0075471 3 1 1 85 3L 16288426 16288444 GATATGGACTGGGATACGG 58 16288359 16288377 GTAGCTCTTGATGATCGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4950 FBgn0036587 FBtr0075479 1 1 1 60 3L 16259967 16259986 CACAACTTCAGAAATTGGGA 58 16259926 16259946 AGATGATGTAGATAGGAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED10 FBgn0036581 FBtr0075458 1 1 1 60 3L 16225538 16225558 GTCTATGTGCCATTTGAAGTG 59 16225580 16225598 ACAGCTGAGGATTCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5151 FBgn0036576 FBtr0075488,FBtr0075487 2 2 2 125 3L 16134523 16134541 ACATTACCAGTACCAGCTG 58 16134354 16134434 ATCTCCGATTGCTGATAGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Notum FBgn0044028 FBtr0075436,FBtr0075435 3 2 2 84 3L 16023316 16023335 GGATACCGACTATATCCCAC 58 16023445 16023464 CATTATCCACTCGCATTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7739 FBgn0036509 FBtr0075596 3 1 1 60 3L 15555023 15555042 TTTACTTGCGAACCATTACG 58 15554982 15555000 AGATCAGGATACCCATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13472 FBgn0036450 FBtr0075691 1 1 1 84 3L 14782306 14782431 ATGGAAGGTATTATGAGGCTG 59 14782477 14782495 TCCTCATGGTTTCCATAGC 59 NA Drosophila melanogaster 50 Syx13 FBgn0036341 FBtr0075886 3 1 1 68 3L 13038636 13038655 ATGTCAACCAGATCATGACC 59 13038686 13039325 CGATGAAATCCATCTGCTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG17667 FBgn0036312 FBtr0075926,FBtr0075925 3 2 2 114 3L 12787408 12787491 ACAAGGATGTCTTTCAGGG 59 12787569 12787587 TCGAGTAGCGTTAGTTCCT 59 NA Drosophila melanogaster 50 eap FBgn0052099 FBtr0076000 1 1 1 60 3L 12143241 12143260 CAAGTTGAGGAACTTCTCGT 59 12143283 12143301 AGTAGCTGATCACTTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32095 FBgn0052095 FBtr0076077 2 1 1 60 3L 11817606 11817624 GACATTAGCTTCCATACGG 57 11817564 11817583 GTAGATTGTGCAATACTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tim13 FBgn0036204 FBtr0076089 2 1 1 149 3L 11767390 11767408 CTTCAAGAAGTGCATCCAG 58 11767259 11767277 ATGGTCCTGTACTGTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6216 FBgn0036139 FBtr0076220 1 1 2 175 3L 11138485 11138503 AGTCCTAAGACCACGAGAG 59 11137496 11138347 AAAGTATCAACTGGGTCTGG 59 NA Drosophila melanogaster 50 CG6310 FBgn0036121 FBtr0076239 2 1 1 80 3L 11062394 11062475 CTATTGCCTACAATCACTGAG 58 11062334 11062353 TGATACTGGATGTTCTCCTG 58 NA Drosophila melanogaster 50 Fad2 FBgn0029172 FBtr0076196 1 1 1 60 3L 11017528 11017547 AATTCATGGCCTATTTGGGT 59 11017569 11017588 TTGACCAAATCCAGTGAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr67Fa1 FBgn0036108 FBtr0076191 3 1 1 114 3L 10883620 10883638 CATCCTTAGGAGCTTGGAG 59 10883716 10883734 ATCACATAAGACTTCCGCT 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG32062 FBgn0052062 FBtr0076290,FBtr0076289 1 2 5 163 3L 10564192 10564210 ACGAGTACAATGGAACCAG 59 10564337 10566558 TACTGTGGATATGCTGAGC 58 NA Drosophila melanogaster 50 Dhh1 FBgn0011802 FBtr0076292 1 1 1 60 3L 10455329 10455348 CAGTTTGTCTACGAATTGCC 59 10455288 10455306 GCAGTTTAAGACGCATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32060 FBgn0052060 FBtr0076283 1 1 1 106 3L 10417909 10418210 GTTAATGAACGAGGATCAGG 58 10418279 10418297 GCATTTAGCAATTGCAGAC 57 NA Drosophila melanogaster 50 CG32053 FBgn0052053 FBtr0076315 3 1 1 172 3L 10084474 10084627 CATTAATGGAGTTCTGTTCGC 59 10084322 10084340 CCTCTTGTAGAACACCGAC 59 NA Drosophila melanogaster 50 dpr6 FBgn0040823 FBtr0076353 3 1 1 200 3L 10029897 10029915 ATGAGTGCCAGATATCGAC 58 10030563 10033968 CATAATTAATGACCTCCTCGTG 58 NA Drosophila melanogaster 50 CG6674 FBgn0036063 FBtr0076354 2 1 1 95 3L 9964532 9964550 GATCGAGTTCAAGAGGACC 59 9964455 9964473 CTTAACTGCGGCTTATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14164 FBgn0036057 FBtr0113157,FBtr0076359 1 2 2 82 3L 9887379 9887459 GATTGATTTGCCCATGATCC 59 9887316 9887334 CATTGGGATGATAGCTCCG 59 NA Nonspecific Drosophila melanogaster 50 CG34382 FBgn0085411 FBtr0112620 1 1 1 188 3L 9873510 9873528 GTCAGGAAACCATCTACGG 59 9875408 9875426 CTTGCAGATACACGTAGTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323 1 4 11 113 3L 9774996 9775719 ACCTGGGTAATTTGTCTGG 59 9775795 9775814 ACATATCGTCCTTCATGTCG 59 NA Drosophila melanogaster 50 vsg FBgn0045823 FBtr0076398,FBtr0076400,FBtr0076399,FBtr0076401 3 4 4 78 3L 9709210 9709228 ATGGATCCTCGTTCATTGG 59 9709270 9709288 TTGTAGAACTTGTAGGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsp27 FBgn0001226 FBtr0076454 3 1 1 63 3L 9377244 9377262 TTGTCTAGACAGGGTTGTG 58 9377288 9377307 GCAGCAGTGGTATAATTGAC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG5026 FBgn0035945 FBtr0076516,FBtr0076515 1 2 2 80 3L 8963987 8964060 TGTGGAGTGATCTCTATTTGC 59 8964101 8964120 TGACAAGTTCCTGAATTTGC 58 NA Drosophila melanogaster 50 mRpL12 FBgn0011787 FBtr0076511 3 1 1 82 3L 8950441 8950459 AGGTGAAGAACCTACTCGA 59 8950505 8950523 GTCCTCCTTAACGATGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 h FBgn0001168 FBtr0076569,FBtr0100153 1 2 2 91 3L 8670523 8670543 CTCAATGAACTCAAGACTCTG 58 8670733 8670751 GTCTTCTCCAGAATGTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17352 FBgn0035880 FBtr0076675,FBtr0076676,FBtr0100664,FBtr0076674 1 4 5 102 3L 8348275 8348293 CTTCGTATCCTCCAAGCAG 59 8347658 8347677 CATGTTCATCATGGTGATGG 58 NA DesignNoJunction Drosophila melanogaster 50 pbl FBgn0003041 FBtr0112817,FBtr0076772,FBtr0076773,FBtr0076774,FBtr0076771 3 5 5 80 3L 7891868 7891886 AGACTGGTTCTGGTATACC 57 7891737 7891826 GTGATGCTATCCAAATAGTCG 58 NA Drosophila melanogaster 50 Srp19 FBgn0015298 FBtr0076879 2 1 1 69 3L 7340782 7340802 GACAATCCCAGCTATATTGAG 57 7340733 7340751 TGTTCTCCATGAGGAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lark FBgn0011640 FBtr0076842,FBtr0076843,FBtr0076845,FBtr0076841,FBtr0076844 1 5 5 99 3L 7334147 7334165 TACGACACTATGTTCAGCC 59 7334466 7334484 TAAAGTCCTCGTAACCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8616 FBgn0035752 FBtr0076834 3 1 1 166 3L 7233026 7233044 AAACTTCACAGAACTCGTG 57 7233229 7233250 TGCTCCAGTAGTTAATAATCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32387 FBgn0052387 FBtr0076919 3 1 3 167 3L 7157973 7158039 TTTGCTACAGACACATGCT 59 7157608 7157843 AGGTTTCCGGAATCTTATCG 59 NA Drosophila melanogaster 50 CG10107 FBgn0035713 FBtr0076952,FBtr0076950 1 2 3 85 3L 6741017 6741035 AAATCTCCACGAACTTTCC 57 6740081 6740970 GGGAGAAATCTTTGTACAAGG 58 NA Drosophila melanogaster 50 CG33523 FBgn0053523 FBtr0091478,FBtr0091476,FBtr0091477,FBtr0091475 1 4 4 284 3L 5921919 5921937 ACAGCAAGGATAAGTTCCT 58 5922249 5922267 TCACGTATTGCAGGTTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10486 FBgn0035647 FBtr0114644 3 1 1 88 3L 5898840 5898859 GATACCTGCTTTACGATGGT 59 5898690 5898708 AAGGCCAGTGATAGATTGG 59 NA DesignNoJunction Drosophila melanogaster 50 DopEcR FBgn0035538 FBtr0100185,FBtr0100186,FBtr0073337 2 3 3 60 3L 4379449 4379467 AAACTGAGCAATGTCAAGG 58 4371891 4379425 CTAATTGTGCGCATCTGAG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 wit FBgn0024179 FBtr0073279 2 1 1 81 3L 4067285 4067305 AGTACTATGTGAACGAGAGGA 59 4067161 4067242 TCATCGTAGCCGAAATAGC 59 NA Drosophila melanogaster 50 CG32264 FBgn0052264 FBtr0113431 3 1 5 142 3L 3754053 3767147 CAACAATAACGGAAACTGGTC 59 3723843 3723861 GTTGTGCATCAGTCTTGTC 59 NA Drosophila melanogaster 50 CG32270 FBgn0052270 FBtr0100421 1 1 1 60 3L 3208707 3208725 GCCTTAATGATGGCAATCC 58 3208665 3208683 TCACTCAGATAGGTCACCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Pxn FBgn0011828 FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951 3 4 5 114 3L 2607772 2607790 TTCGTCAAGAATGTGACCA 59 2604263 2607695 CCAAATCCACGTTGTTTCTG 59 NA Drosophila melanogaster 50 Pxn FBgn0011828 FBtr0072950,FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951 2 5 5 148 3L 2611835 2611855 CTGAACAATAATCGGCTAAGC 59 2611549 2611649 TACATGATCAGGCGATTCAG 59 NA Drosophila melanogaster 50 msn FBgn0010909 FBtr0072957,FBtr0072956 1 2 5 182 3L 2558381 2560125 CAGTGAGGAGTATCAAGCG 59 2558217 2558235 GAATTCGAGGACGAAGAGG 59 NA Drosophila melanogaster 50 CG33232 FBgn0035347 FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920 2 4 4 87 3L 2495884 2495902 ACATTAGCTCCGAGTACAC 58 2495951 2496030 GCATTATGACCATATGACTCC 58 NA Drosophila melanogaster 50 CG32298 FBgn0052298 FBtr0072897 1 1 1 60 3L 2390645 2390663 CGAGCTAGAGTTTGTTGAC 58 2390603 2390623 TATCTTCTTCGATAGACCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32308 FBgn0052308 FBtr0072851 1 1 2 81 3L 2023324 2025976 GGCAAATTTCTTCAGACTGG 59 2023262 2023280 CAAATTGCCTCAGTTGCTC 59 NA Drosophila melanogaster 50 HBS1 FBgn0042712 FBtr0072866 3 1 1 60 3L 1864618 1864636 AGATCCTCAACGAAGAGAC 58 1864576 1864595 GGCGCTTTCATCTTATTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bgb FBgn0013753 FBtr0072758 1 1 1 60 3L 1640393 1640411 GTTCCGTGGATGGATAGAC 59 1640435 1640453 CTCGTCATACTCCAGACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12090 FBgn0035227 FBtr0072703 1 1 3 124 3L 1528072 1529120 GAAAGATCATCATAGGCGTC 58 1527967 1527987 CAGAGTGTAATCCGATATCAC 57 NA Drosophila melanogaster 50 stet FBgn0020248 FBtr0072713,FBtr0072712 2 2 2 202 3L 1476518 1476595 CATTCTGGTCTTCGTTTCC 58 1476334 1476352 TCTGCTCAAAGCTCTTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG9153 FBgn0035207 FBtr0072671,FBtr0072670 1 2 2 83 3L 1317542 1317560 AATGAGGATTACGACTGGC 59 1317604 1317680 CCATTTGATTGTATCATCGACC 59 NA Drosophila melanogaster 50 CG9153 FBgn0035207 FBtr0072671,FBtr0072670 2 2 2 88 3L 1317537 1317556 TGGGAAATGAGGATTACGAC 59 1317604 1317680 CCATTTGATTGTATCATCGACC 59 NA Drosophila melanogaster 50 scf FBgn0025682 FBtr0089942,FBtr0089940,FBtr0089941 1 3 3 60 3L 1299627 1299647 TATTTGAACGAGGAGGAAGTG 59 1299669 1299687 CCTCCGAATGATCGAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32333 FBgn0052333 FBtr0100256,FBtr0072662 3 2 2 254 3L 1285102 1287941 ATCTGCTAGTTGACAGTCG 59 1288159 1288177 GATGGAAGTAGTCGAACAG 57 NA DesignRelaxed Drosophila melanogaster 50 bab1 FBgn0004870 FBtr0072642 2 1 2 138 3L 1099101 1099119 GATCCGAGAGGAAGAAAGG 59 1040162 1040180 ATTCTGGTTGGTGTTCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13887 FBgn0035165 FBtr0072583,FBtr0072584 3 2 2 61 3L 838421 838440 TTCTACATCTCTGGATTCGC 59 838464 838482 ATCAAGTTTACCAGTCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 emc FBgn0000575 FBtr0072578 2 1 1 101 3L 749780 749801 GAAGATGTATCTGTCCAAACTG 58 749863 749881 CAGATGTAGTCGATGACGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3279 FBgn0035156 FBtr0072607 3 1 1 60 3L 692360 692380 AGGATGTGTCCATAAGTACAG 58 692320 692339 TCAATCCTTTCCGAGTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rev1 FBgn0035150 FBtr0072557 1 1 1 98 3L 657500 657520 GTGGATCTTATTCTCAAGCAG 58 657580 657662 CATATTGATGATCCGGCAC 58 NA Drosophila melanogaster 50 trh FBgn0003749 FBtr0112839,FBtr0072567,FBtr0110875 3 3 3 80 3L 368937 369016 AACTATGTGATCAGCAACC 57 368875 368893 CTTAATGCTATCCGGACTG 57 NA Drosophila melanogaster 50 snoRNA:Psi18S-1347b FBgn0083053 FBtr0113514 3 1 1 75 2R 14030550 14030570 CGACTAAGATTCATAGTTGCC 58 14030607 14030625 GTTATGCAGATGGTATGCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3760 FBgn0022343 FBtr0072391,FBtr0072392 1 2 2 123 2R 20826705 20826723 TCCAAGACCTACGTTTCAC 59 20826863 20826881 ACTCGGTATTGGTGATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13592 FBgn0035019 FBtr0072345 2 1 1 60 2R 20418321 20418339 CTCTACAGCTACCTACCGT 59 20418279 20418298 ACTCGGACACATTTGATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11406 FBgn0034990 FBtr0100169,FBtr0072276 1 2 2 153 2R 20090339 20093348 TATCCATTGGATCGTAGCA 57 20090044 20090062 CATATCGCAGCGTATTCAG 58 NA Drosophila melanogaster 50 Sox14 FBgn0005612 FBtr0072158,FBtr0072157 1 2 2 60 2R 19872011 19872029 AGACAACATTGTGAACGAC 58 19872050 19872071 CACATATGGAGGTATTTGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Alas FBgn0020764 FBtr0072151 1 1 1 60 2R 19853862 19853880 TCAAATCTCAAACGTGCTG 58 19853904 19853922 TGGGTAGTTAATCGACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30416 FBgn0050416 FBtr0072042 2 1 1 60 2R 19209563 19209584 GACAGATCTCGATGTATATGAC 57 19209524 19209542 ATGCCCTTCATTCATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30412 FBgn0050412 FBtr0072044,FBtr0072043 1 2 2 72 2R 19206418 19206436 TTTACGGACTTCGTAAGGC 59 19206364 19206382 TCTGCTTGAAACCCATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yip3 FBgn0040063 FBtr0072050,FBtr0072051 2 2 2 117 2R 19132235 19132253 GTCTTAAGAGTACCAACGC 57 19132086 19132104 ACTATGTTCCGATCGATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3162 FBgn0034834 FBtr0072052 1 1 1 60 2R 19098280 19098301 CCCAATAAGATCTACGTAGGTG 59 19098241 19098259 GTTCCTTGACCTGATCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED23 FBgn0034795 FBtr0071903 1 1 1 80 2R 18779968 18779988 CAAATGTCCACCAGATATTGG 59 18780027 18780106 GATATGTTATAGGTCGATCGTG 58 NA Drosophila melanogaster 50 stl FBgn0086408 FBtr0113110,FBtr0071885 2 2 2 81 2R 18703125 18703200 ACCATCACATTCAGATATCTCC 59 18703241 18703260 TTTGCTACTCAGTTCGTCTG 59 NA Drosophila melanogaster 50 jbug FBgn0028371 FBtr0071917 3 1 3 92 2R 18605691 18605709 CTGACCATCAAGTACGGAG 59 18605546 18605635 ATAAACGCGGACCTTACTG 59 NA Drosophila melanogaster 50 CG11291 FBgn0034713 FBtr0071773 3 1 1 60 2R 18099068 18099086 CATTGAGGGCTCTGTAGAG 59 18099110 18099128 TATGAGACATCGCTTTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9865 FBgn0034649 FBtr0071680 1 1 2 167 2R 17557180 17557260 AAGAATCACTACCAGGAGGA 59 17556976 17557050 TTATTTGTTCGACTTGCCG 58 NA InUTR Drosophila melanogaster 50 Egfr FBgn0003731 FBtr0071653,FBtr0071654 2 2 2 178 2R 17443838 17443856 GTCAACGAGAATCTCAGGG 59 17444064 17444153 TCAAACTTGTAGGCATTGGA 59 NA Drosophila melanogaster 50 Sdc FBgn0010415 FBtr0071707,FBtr0071706,FBtr0071705 2 3 3 143 2R 17299915 17367606 CTCAAGATCAGAAATCGGTG 58 17286794 17286815 GATCTTTCTCTAGATCTTCGTG 57 NA Drosophila melanogaster 50 CG30389 FBgn0050389 FBtr0071633,FBtr0071632 3 2 3 100 2R 17043171 17043192 GGTCTGTTTATTCTTCATACCC 58 17043018 17043112 GCAAACAGATACCCTTATCTG 58 NA Drosophila melanogaster 50 CG9945 FBgn0034527 FBtr0086225,FBtr0086226 3 2 2 238 2R 16506496 16506514 TGGATTAGTGAGCAATCCG 59 16506716 16506794 CAAAGCCATCTTGACAAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13426 FBgn0034510 FBtr0086295 3 1 1 65 2R 16400572 16400590 AGATACAGGGCCAAATGTG 59 16400470 16400488 AGACTTGCACTTCAAATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS18 FBgn0010411 FBtr0086273,FBtr0086274 2 2 2 205 2R 16151894 16151912 ATGTCGATCTTACCAAGCG 59 16152141 16152159 GATCTTCTTCAGACGCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15124 FBgn0034461 FBtr0086470 2 1 1 60 2R 15530554 15530575 CAATATGCTCGACTTTACAGAC 59 15530596 15530614 GTGCAGAGTTATGTTCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0100393 1 1 15 197 2R 15353087 15353105 TTGTGGTGACAATGATCGA 59 15353727 15353745 TTTATGTAGCACTTGTGCG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15088 FBgn0034381 FBtr0086646,FBtr0086645 3 2 2 83 2R 14616063 14616081 GATTTCTACGGTGTCTCCT 58 14615933 14616017 GCGATTAACTCCGTAAATCC 58 NA Drosophila melanogaster 50 GstE3 FBgn0063497 FBtr0086671 2 1 1 60 2R 14288429 14288447 CGCTCTGGATGATAATGGT 59 14288469 14288489 CACCAGGTAGGAGTTAATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18107 FBgn0034330 FBtr0086663 3 1 1 77 2R 14272156 14272174 AATCGTCACTGTCTTTGTG 57 14272278 14272297 ATAACATTTCCTGGATCGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lolal FBgn0022238 FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778 3 4 4 123 2R 14042986 14043404 TCACAGATGTAACACTCGC 59 14042819 14042838 ATAATGATCGGATGCTTCGA 59 NA Drosophila melanogaster 50 CG34386 FBgn0085415 FBtr0112627 3 1 1 84 2R 13978157 13980061 AACATCAACCAAAGGTCAG 57 13980108 13980127 ATGGTAACTCATTGTTGGTG 58 NA Drosophila melanogaster 50 swi2 FBgn0034262 FBtr0086889 2 1 1 173 2R 13580226 13580244 ATCACTACCATAACCACCG 58 13579919 13580089 CTTTCCAGATTGGTTCAGC 58 NA Drosophila melanogaster 50 CG6520 FBgn0034224 FBtr0086953 1 1 1 80 2R 13363194 13363212 TTGAGCAGGATCTAAACGA 58 13363132 13363150 CATCCTCGTCACTTTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30457 FBgn0050457 FBtr0086998 3 1 1 219 2R 13048142 13048160 CTACAACTATGCTCCCGTC 59 13047941 13047960 AATGTAGGTGTTCACTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdk4 FBgn0016131 FBtr0087104,FBtr0087103,FBtr0087102 1 3 3 110 2R 12470447 12470465 ATATCGCTGAACGAGAACG 59 12470537 12471672 GCATACTTCGTACAGTTTGAC 59 NA Drosophila melanogaster 50 Ric FBgn0017549 FBtr0087254 1 1 1 116 2R 11997163 11997181 GCGGGTCTATAAGATTGTC 57 11996770 11996885 TAGGAGTCCTCAATTGTGG 58 NA Drosophila melanogaster 50 GalNAc-T1 FBgn0034025 FBtr0087332,FBtr0087331 2 2 2 61 2R 11401756 11401906 GACTTCCATCCTTACAAATTCC 59 11401927 11401946 ATGCGGGCAGTATTAATACC 59 NA DesignRelaxed Drosophila melanogaster 50 scb FBgn0003328 FBtr0087370,FBtr0087369 1 2 2 80 2R 11144983 11145002 TGGATCATTATTGTGTCCGT 59 11145042 11145127 GAAGAAGCCAAACTTGTATAGC 59 NA Drosophila melanogaster 50 cpsf FBgn0024698 FBtr0089257,FBtr0089258 1 2 2 81 2R 10389447 10389468 GTAGATCAATTGGAAATGGCAC 59 10389329 10389405 CTCCAGAACCATACACCTC 59 NA Drosophila melanogaster 50 cg FBgn0000289 FBtr0112795 3 1 7 86 2R 10067360 10067378 CCTTCTTCCAGAAGAACCA 58 10067428 10067936 GTACAACAAGCTGTTGCTG 59 NA Drosophila melanogaster 50 CG6016 FBgn0033844 FBtr0087699,FBtr0087700 3 2 2 100 2R 9379091 9379170 TGTTCTTCCAGTGCTTCTG 59 9379009 9379028 CTCTGTCACATCAATTCTGC 58 NA Drosophila melanogaster 50 CG32843 FBgn0052843 FBtr0087755 3 1 1 101 2R 9160232 9160250 CTCCAGTACATCCTTACGC 59 9157017 9160167 GCACAGACCTTGAAATGAG 58 NA Drosophila melanogaster 50 Nmda1 FBgn0013305 FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876 2 6 6 91 2R 8765640 8765660 CGAACTTCATATTCTTGGGTC 58 8765511 8765587 CATGAGAACCTCTTTCGGA 58 NA Drosophila melanogaster 50 fdl FBgn0045063 FBtr0087946,FBtr0087947 3 2 2 133 2R 8376192 8376277 GAAAGAAGCAGGTACTGGG 59 8376077 8376096 GTGATCATCGCTAGGATCAG 59 NA Drosophila melanogaster 50 Cyp6g1 FBgn0025454 FBtr0087992 3 1 1 82 2R 8075204 8075222 CTACGACTACACTCTCGAG 58 8075268 8075346 GATTGGTCCAGTACTTTGG 57 NA Drosophila melanogaster 50 CG30016 FBgn0050016 FBtr0088241 3 1 1 60 2R 6762573 6762591 GAGGACACTTTATCCAGCA 58 6762531 6762552 GTGATAGTTCTGATTCTCACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Caf1-105 FBgn0033526 FBtr0088310 3 1 1 60 2R 6354742 6354761 CTACTGCTCACTGATTACCT 58 6354701 6354722 TTCCATATCTTCATAGCAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12928 FBgn0033432 FBtr0088540 2 1 1 105 2R 5475831 5475910 GATTCGGATTTACAGCTTCG 59 5475745 5475763 GTGCATAAAGCGCATTACC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Myd88 FBgn0033402 FBtr0088598 2 1 1 80 2R 5192789 5192807 TCACAGAGGAGTTTCTTCG 58 5192654 5192747 GAGTGTGATTCTCAATCTGGA 59 NA Drosophila melanogaster 50 CG34141 FBgn0083977 FBtr0110980 2 1 1 128 2R 5150166 5150184 AAACAGAACAGGATGTCGA 58 5149998 5150016 GTTTGTTAAGAGCCCTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 hig FBgn0010114 FBtr0088608,FBtr0100119,FBtr0088606,FBtr0088607 2 4 4 86 2R 5117876 5117894 TCATGGACTGCATGTATCC 59 5117583 5117829 GAGACCATCCTGTAGAATACTG 59 NA Drosophila melanogaster 50 alc FBgn0033383 FBtr0088624,FBtr0088625 1 2 2 68 2R 5023270 5023288 CAAGGATACACCGCTATCG 59 5023161 5023179 AAGTGGTTAAGCATCACGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG8258 FBgn0033342 FBtr0088683 1 1 1 122 2R 4793178 4793196 ACAAAGTTTGCATCGAGGA 59 4793010 4793031 CAATGTCATCCATGAAGTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 1 9 9 90 2R 4568146 4568164 AGATCAAGACCTGCTTGTG 59 4568217 4568299 ATATCACGGTAGTCCATGAC 58 NA Drosophila melanogaster 50 CG8693 FBgn0033294 FBtr0088748 2 1 1 93 2R 4347436 4347454 TCCGATGCCTATCATTACG 59 4347511 4347615 TGTCATGGTTACCGATCAC 59 NA Drosophila melanogaster 50 sut2 FBgn0028562 FBtr0088778 3 1 1 97 2R 3975942 3975960 AAGGAATAGTGAGCTGTGG 58 3976018 3976098 AGAGCGAGTAGAAGAATATAGC 58 NA Drosophila melanogaster 50 Optix FBgn0025360 FBtr0088865,FBtr0088866 1 2 2 78 2R 3929501 3929519 CATGATATCAGCGGGTCTG 59 3929561 3929579 ATTTGGGATTTCGGTTTGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11107 FBgn0033160 FBtr0088966 3 1 1 80 2R 3275871 3275889 GAGATTACCTAGAGGCTGC 58 3275931 3276230 GGAACATTAGGATATCACCCT 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111093,FBtr0111073 1 2 60 109 2R 3236477 3245110 AATGCCGTTCTTTAGATGG 57 3236386 3236407 CGTCCTTAATAATGAGAGTACC 57 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111066 3 1 60 110 2R 3225835 3225853 CGATAGATTCCGTTCATGC 58 3219874 3225761 ATCTGGGAGGTACATTGAC 58 NA Drosophila melanogaster 50 Tsp42Ej FBgn0033132 FBtr0089030 3 1 1 82 2R 2929211 2929230 GGTGTCGTACAAGTATTCCA 59 2929329 2929347 TGAAGGTGAAGAGGTAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG34215 FBgn0085244 FBtr0112408 3 1 1 124 2R 2719085 2719103 GTGTGAGCGAATCATATGC 59 2718925 2718943 AGCAATCAGGGTAATCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3271 FBgn0033088 FBtr0086118,FBtr0086119 3 2 2 108 2R 2561684 2561772 ATATTCGCAGTGACGAGTC 59 2561842 2561862 AGATGATGGAATAGGCAAAGG 59 NA Drosophila melanogaster 50 CG30432 FBgn0050432 FBtr0086002 3 1 1 60 2R 2085637 2085658 GGGATTATATGTTTGGTGATCG 58 2085598 2085618 CAAAGTCATTGAGACGATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PNGase FBgn0033050 FBtr0085971,FBtr0085972 3 2 2 168 2R 1905648 1905667 TGAAGAAGTACAGAGATGCG 59 1905853 1905933 TTATTGGTGCGCAATACAC 58 NA Drosophila melanogaster 50 CG14464 FBgn0033000 FBtr0111283 2 1 2 68 2R 716970 716989 AAATATTCGCTCAAACGGTC 58 717073 717091 TTATACCAGCAACCATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41485 FBgn0084045 FBtr0111242 2 1 1 61 2L 22834393 22834411 TCTTTGGTTCTGGGAAGAG 58 22834436 22834454 CAAGGATGTTATTGTGGCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40006 FBgn0058006 FBtr0111230 3 1 1 88 2L 22580846 22580921 ATAAACTTGTACCGGGTGG 59 22580776 22580796 CCATTATCAAAGGCGTTATCC 59 NA Drosophila melanogaster 50 CG17494 FBgn0040011 FBtr0111253,FBtr0111252 3 2 3 110 2L 22473764 22473782 AGCATGATCACTGAAGACC 59 22473855 22476862 CTTTACAATCTCGTTTCGCA 58 NA Drosophila melanogaster 50 clumsy FBgn0026255 FBtr0081476,FBtr0110895 3 2 2 81 2L 21207154 21207231 CAGTTCAGACATAATTGCCT 57 21207272 21207293 GATAGATTCATTGGGTATCCAG 57 NA Drosophila melanogaster 50 szar FBgn0032885 FBtr0089947,FBtr0089945,FBtr0089946 3 3 3 131 2L 20790495 20790513 AACATTACTGCCGAATCTG 57 20790327 20790400 CTTCGAGATTCTTGTTCCG 58 NA Drosophila melanogaster 50 CG40176 FBgn0058176 FBtr0100292 3 1 1 129 2L 20268869 20269594 TATCAGACTGCAATGCTCC 59 20268232 20268252 AATTAAACTCCACTCCGACTC 59 NA Drosophila melanogaster 50 CG10664 FBgn0032833 FBtr0081300,FBtr0081301 2 2 2 129 2L 19959684 19959761 CATCTTCGTGTACGATGAG 57 19959854 19959872 CTTGTTCTCGTAGTCCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13964 FBgn0032831 FBtr0081298 3 1 1 72 2L 19946092 19946110 AAAGTCTCTATGCCAAGCC 59 19946146 19946164 TACAGATTAAGGCGTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18094 FBgn0032791 FBtr0081243 2 1 1 60 2L 19490895 19490913 GGCATCTTGATTTGCACAG 59 19490936 19490955 GATGACCCGATTTAGAATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pax FBgn0041789 FBtr0081213 1 1 6 80 2L 19411587 19411605 TATCATCGTCGTTCCACAG 59 19410632 19411544 CTAATAGAGCATCCAGACGT 58 NA Drosophila melanogaster 50 brat FBgn0010300 FBtr0081159,FBtr0081160,FBtr0081158 3 3 3 60 2L 19168285 19168303 TCTGCAGTGATGAGTACAC 59 19168327 19168345 ATTACAGTCACCTCAGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 BicD FBgn0000183 FBtr0081002 2 1 1 88 2L 17463879 17464002 CTAGAGACCTTACAGGGTG 58 17463809 17463828 ATGTGGTACATAGACTCACG 58 NA Drosophila melanogaster 50 dl FBgn0000462 FBtr0081005,FBtr0081006 3 2 3 108 2L 17438009 17438159 GAACCAAGAGATACCTCGC 59 17437919 17437937 TGTTGTGGTTGTAGTTGCT 59 NA Drosophila melanogaster 50 Gr36a FBgn0045487 FBtr0080962 1 1 1 90 2L 17177703 17177778 GAGCAATCCTTTGAAAGCA 58 17177832 17177850 ATGAACTGCGAGTAATGGT 58 NA Drosophila melanogaster 50 trpgamma FBgn0032593 FBtr0080946,FBtr0080945,FBtr0114470 1 3 3 80 2L 16665213 16665232 CGAGCAAGAATATTTGTCCG 59 16665101 16665173 GCTTAAGGGTCTTATCATTCAG 58 NA Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080878,FBtr0080876 1 3 7 188 2L 16483962 16483981 TCTGCATACGGTTTATACCA 58 16481537 16483811 TTGATCGATAGGCATCTGG 58 NA Drosophila melanogaster 50 CG31823 FBgn0051823 FBtr0080810 2 1 1 60 2L 15899211 15899308 CCAGCGAATCAAATAGTTACC 59 15899171 15899192 AATAAATACCCACCTGTATCGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG18480 FBgn0028518 FBtr0080755 3 1 1 61 2L 15630510 15630529 TGATATAACCACCATTGACG 57 15630670 15630688 ACGTAAGATTAAGCAGGTG 57 NA DesignNoJunction Drosophila melanogaster 50 vig FBgn0024183 FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720 3 4 4 85 2L 15065447 15066946 GATAGAACTGGTGTGAAGTC 57 15065381 15065399 ACATCATCAATAGCCTCCT 57 NA Drosophila melanogaster 50 vig FBgn0024183 FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720 2 4 4 84 2L 15065452 15066950 TTCCGATAGAACTGGTGTG 58 15065386 15065404 ATCAATAGCCTCCTTGACC 58 NA Drosophila melanogaster 50 mol FBgn0086711 FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015 1 5 5 162 2L 14977342 14977360 TATGAAGGCTTTGACAGGT 58 14977067 14977217 AATAAAGCAGAGAATGCCTG 58 NA Drosophila melanogaster 50 osp FBgn0003016 FBtr0089865,FBtr0089866,FBtr0114465 2 3 3 107 2L 14605240 14610697 GATCACAAATCGGGTTTCC 58 14605151 14605170 TGACTCAGATTCGTTATGGT 58 NA Drosophila melanogaster 50 Rab14 FBgn0015791 FBtr0080627,FBtr0080628,FBtr0080626 3 3 3 82 2L 14357909 14357928 CTAATGTTTCTCGAAGCGAG 58 14358041 14358059 TTCTGGTAAATCTTGCGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32971 FBgn0052971 FBtr0080621,FBtr0114463,FBtr0114462 3 3 3 68 2L 14277702 14277722 CATGATGTCAAGGAGTATCAG 57 14277751 14277770 CGATTGTCTATCCATTTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33641 FBgn0053641 FBtr0091618 2 1 1 69 2L 13529140 13529158 CAAGTATAAGGTGCCAGAC 57 13529191 13529209 GTAGCTTCGATTATTCGCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9293 FBgn0032516 FBtr0080526,FBtr0080525 1 2 2 92 2L 13386150 13386168 CAATGAGCCCACATATTGC 59 13386014 13386032 AAGTGAAACCACTCGATGG 59 NA DesignNoJunction Drosophila melanogaster 50 beta Cop FBgn0025724 FBtr0080469 2 1 1 70 2L 13380055 13380073 ATGTCTATGGACGTTGTGG 59 13380107 13380187 TTTAGATTGACCTGCTGCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG9302 FBgn0032514 FBtr0080470 3 1 1 89 2L 13377041 13377059 TGGTCATGTTCTATGCACC 59 13376907 13376925 GAGGATCATCCTGTAAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6565 FBgn0032513 FBtr0080468 3 1 1 60 2L 13375355 13375374 ATATACTGGGAGATGCAGTG 58 13375397 13375415 GGCGACAATAGACGTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9928 FBgn0032472 FBtr0080496 1 1 1 60 2L 13142694 13142714 GTTCTGATGACGATAGGACTC 59 13142654 13142674 CTATCATTGCCACTGTTATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5776 FBgn0032450 FBtr0080407 1 1 1 158 2L 12703466 12703484 AGTATGGAGTACGCTTTGG 59 12703273 12703291 TATAAGCTGGACATGTCCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG5446 FBgn0032429 FBtr0080388 2 1 1 92 2L 12427509 12427527 AGAACTACTCCCTGAACAG 57 12427354 12427372 ACTTGTCCTGAACGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6734 FBgn0032395 FBtr0080312 3 1 1 118 2L 12015032 12015050 CTTAGATCATAGCCTGGCC 59 12014869 12014887 TTGCATAGACCAGAGATGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33695 FBgn0052831 FBtr0091683 2 1 5 220 2L 11278274 11278293 AAATTTGTTGTTCCACCGTG 59 11278636 11278654 TTAGGCTGATCTTGGTCAG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG4713 FBgn0032342 FBtr0080197 1 1 1 80 2L 11109227 11109245 GAATCAGCTACAATGTGGC 58 11109288 11109365 AAGATTCATCATTGAGCAGG 57 NA Drosophila melanogaster 50 CG14072 FBgn0032318 FBtr0080145 2 1 1 60 2L 10937631 10937649 GGCAACCAAATTTGATTCG 58 10937670 10937691 GACCTTGAAGATTAATTCCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6443 FBgn0032290 FBtr0080110 1 1 1 68 2L 10729250 10729268 ATGGAGGAACTATTCCCAG 58 10729300 10729381 CTTTGTCTTTCTGCTCTGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG17097 FBgn0032275 FBtr0110819 1 1 1 80 2L 10649590 10649667 TTCAATACGACCCTCACTC 58 10649709 10649729 CTGTGCATAGTGATAGATCTG 57 NA Drosophila melanogaster 50 CG5022 FBgn0032225 FBtr0079999 1 1 1 80 2L 10345912 10345995 AATAGTTCAAGAGGAGCTGG 59 10346038 10346056 CGCAGTGCTAATTCTATGG 58 NA Drosophila melanogaster 50 Pten FBgn0026379 FBtr0089900,FBtr0089904 1 2 6 82 2L 10257442 10257462 CACATGTAAACAATCCTCTCC 58 10256492 10257398 GGTATGTTGATTCACCGGA 59 NA Drosophila melanogaster 50 CG17855 FBgn0032124 FBtr0079830 1 1 1 84 2L 9541501 9541519 TCTAGCAGTGAATCTGACC 58 9541567 9541643 TTTGTATGAGGCTATGGGT 57 NA Drosophila melanogaster 50 Toll-4 FBgn0032095 FBtr0079768 1 1 1 136 2L 9084212 9084230 AATAACAAGGACGATCCAC 57 9085519 9086251 CAGTTAATGTCTCCCATCC 57 NA Drosophila melanogaster 50 Btk29A FBgn0003502 FBtr0079616,FBtr0112836,FBtr0079617 2 3 6 142 2L 8298083 8298102 CTTTCAGCTACTTCGATGTG 58 8284050 8284128 TTGGAACGGATAACCATCC 59 NA Drosophila melanogaster 50 Slob FBgn0024290 FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518 3 4 4 81 2L 7649009 7649028 TTGAGGACTTAGTCCTTTGC 59 7648879 7648968 GGCTTAATTGTACTGAAACAGG 59 NA Drosophila melanogaster 50 ninaC FBgn0002938 FBtr0079436 3 1 2 80 2L 7383685 7383703 AGCAAAGATCCTCGTATCC 58 7383747 7383816 CCTCAGAGTTATCACCCTC 58 NA Drosophila melanogaster 50 wg FBgn0004009 FBtr0079433,FBtr0079432 2 2 2 97 2L 7313109 7313127 GAATCTGCACAACAACGAG 59 7314366 7314384 TCTTCACTGTACACGATCC 58 NA DesignNoJunction Drosophila melanogaster 50 Hrb27C FBgn0004838 FBtr0079347,FBtr0079348,FBtr0079346 2 3 3 170 2L 6924245 6924263 ACCTTCTTTAACCGCTACG 59 6924397 6924699 CTTCTTGATTTCGACCTGC 58 NA Drosophila melanogaster 50 Oatp26F FBgn0051634 FBtr0079327 2 1 1 81 2L 6627591 6628524 TTTACTTGGGCATCTACTACAC 59 6627531 6627549 TAGATGAGCAGCAGTTGTC 59 NA Drosophila melanogaster 50 Sec61alpha FBgn0086357 FBtr0079266 3 1 1 70 2L 6480070 6480090 GAAGTTATCAAACCGTTCTGC 59 6479049 6480038 TCCCTGAATTGGATCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9500 FBgn0031804 FBtr0079280 1 1 1 83 2L 6358073 6358150 GCTATCAGAAACAAACCCG 58 6358008 6358027 AGTACTAGCATTGGATTGGT 58 NA Drosophila melanogaster 50 stai FBgn0051641 FBtr0079196,FBtr0079197 1 2 3 178 2L 6122168 6122186 GTGACATGAAGGAGAAGCT 59 6122398 6122706 GATTGTGTTATGCTCCTTTAGG 59 NA Drosophila melanogaster 50 CG9140 FBgn0031771 FBtr0079216 2 1 1 80 2L 6061112 6061195 CATGACTCGATTTGTTAAGGG 59 6061052 6061071 TGTCCCTCAATTTGTTTGGA 59 NA Drosophila melanogaster 50 qtc FBgn0028572 FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260 3 5 7 122 2L 5068375 5068393 ACGAGTTGGAGAACATACG 59 5069211 5070106 GATAAATGGTCTTACGCGC 59 NA Drosophila melanogaster 50 CG8892 FBgn0031664 FBtr0079045,FBtr0079046 3 2 2 61 2L 4980357 4980375 GTACTGGTGAGGAAGTGTG 59 4980314 4980335 CAAATCGGGAAGAATATTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17612 FBgn0031597 FBtr0077464,FBtr0077463 1 2 2 60 2L 4381618 4381636 GTCTTGAAGCCCATATGTG 58 4381576 4381594 GGCTCCAACTCTGATTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31959 FBgn0051959 FBtr0077488 3 1 1 187 2L 3758661 3758742 AGATATTCGGGAACAGTACTG 59 3758891 3758909 TTTCAAATGGAGCATAGGC 58 NA Drosophila melanogaster 50 CG16704 FBgn0031558 FBtr0077550 2 1 1 171 2L 3692499 3692517 ACTCATCTGCTGTCTTGTG 59 3692231 3692249 ATTATTGTTTCCGTGGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15418 FBgn0031554 FBtr0077556 1 1 1 196 2L 3621633 3621651 TCTGTCACTGACGTTAGTG 58 3621455 3621473 CAACCAATAGCAACACCAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Dot FBgn0015663 FBtr0077532 2 1 1 61 2L 3620689 3620708 ACCTAAAGAAAGCTCTTGCA 59 3620788 3620806 GACCTCAAGAGATCGTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31698 FBgn0051698 FBtr0077612 1 1 1 60 2L 3173805 3173823 GAGAGCAATACGAGTTCTG 57 3173763 3173782 CGATATTACGGCCATTAGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17257 FBgn0031495 FBtr0077651,FBtr0077652 1 2 2 152 2L 3031809 3031827 TTTGCCATCCGTTTATGGT 59 3032000 3032021 CGAGTATAAAGGCTATGTAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 Prx6005 FBgn0031479 FBtr0077684 3 1 1 162 2L 2877381 2877621 CGCAACTTTGATGAAATCCT 59 2877238 2877256 TGGTTTCGATACCATCAGG 59 NA Drosophila melanogaster 50 Hrs FBgn0031450 FBtr0089751,FBtr0089750 1 2 3 168 2L 2740460 2740524 CAGAAAGATGTCACTCCCA 58 2740656 2740674 TGAACATCTCGCAGTTCTC 59 NA Drosophila melanogaster 50 CG3862 FBgn0031286 FBtr0078038 2 1 1 61 2L 825369 825389 GTGATCATTTATCCTACAGCC 58 825328 825346 ATGTCCTCGTCTGTTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ipk2 FBgn0031267 FBtr0078074 2 1 1 74 2L 573290 573308 CTTTGCTCATGTTTACCCG 59 573234 573252 TCTATCAGGCTCTGGAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 r-cup FBgn0031142 FBtr0077269,FBtr0077270 2 2 2 60 X 20896647 20896667 CAGAAGTACTTCGACAAATGC 59 20896607 20896626 GATAAAGAGCCTTGTGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 D2R FBgn0053517 FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461,FBtr0070034 1 5 5 80 X 19905403 19905495 ATAGACAGATACATCGCTGTG 59 19905343 19905361 CAGTATCGTAAGGCAAACG 58 NA Drosophila melanogaster 50 CG14223 FBgn0031053 FBtr0074758 3 1 1 66 X 19554627 19554710 TCTGCTCTGCCTTATTTCC 59 19554579 19554598 CGGTGATATCCTTAGGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14213 FBgn0031047 FBtr0074744,FBtr0074743 3 2 2 116 X 19533765 19533783 TGTACCCTTTCTTGTCGAC 59 19533938 19533956 GAAAGGTGATCACCTCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 kek5 FBgn0031016 FBtr0074707,FBtr0074708 3 2 2 200 X 19360066 19360084 CTTCCAAGATGGACAAGAC 57 19360248 19362351 AGTGATTGGCCACATAGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CCKLR-17D3 FBgn0030954 FBtr0113003 1 1 1 236 X 18660137 18660155 TTCTACAACATCCTGCTGG 59 18659525 18659938 TTCATTATAGACTGCGGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Cyp308a1 FBgn0030949 FBtr0074604 3 1 1 64 X 18605173 18605192 GAACTTAAGGTGCATTTGGG 59 18605219 18605298 GCGGGATCTAAATGAATGG 58 NA DesignRelaxed Drosophila melanogaster 50 Ing3 FBgn0030945 FBtr0074614 3 1 1 100 X 18545398 18545416 AGAAGAAGCTAACCACAGC 59 18545316 18545334 TTCCAGACTAATCGACGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Frq1 FBgn0030897 FBtr0074545,FBtr0100239 3 2 2 153 X 18062517 18063531 GAGAACAATGATGGCTCCA 59 18063774 18063794 CTATGTTGTACATCTCCTCCC 59 NA Drosophila melanogaster 50 CG9777 FBgn0030764 FBtr0074287 1 1 1 60 X 16525180 16525198 AAGCTTAAGGCCAAGATGG 59 16525138 16525157 GTTCGTTAGTTGAATTGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9509 FBgn0030594 FBtr0073978 1 1 1 60 X 14801228 14801249 TTTGTTCTACTCTCACATCCTG 59 14801189 14801209 TGGGATCTGTACTCTTTAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12723 FBgn0030459 FBtr0073738 2 1 1 152 X 13084523 13084541 AATACCACAATTTCCCGGA 58 13084389 13084407 AATTGGCTAGTTGGTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9360 FBgn0030332 FBtr0073613 3 1 1 133 X 11657855 11657955 CCCAGACCAAGATTACGAG 59 11657740 11657758 GATGCAGTAGCTAATGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11122 FBgn0030266 FBtr0073481 3 1 1 61 X 11014957 11014978 GTTCATCCAAGTTGAAGAACTC 59 11014856 11014935 TTTCCGAATGGATTCAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12637 FBgn0030224 FBtr0071504 2 1 1 60 X 10567051 10567069 AGACGACATTCGTTTCCAG 59 10567009 10567028 GAATTCGCATACAATGACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PPP4R2r FBgn0030208 FBtr0071452,FBtr0071453,FBtr0071451 1 3 3 87 X 10373988 10374006 CTAATCGATCCTCGGAAGC 59 10374057 10374134 GATCGATTGTGCTAACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 rdgA FBgn0085373 FBtr0112550,FBtr0112552,FBtr0112551 3 3 3 116 X 8918161 8918303 TCTCAATATGTTACGTGCAC 57 8918381 8918400 TATTTGACAATGTCCCTGTG 57 NA Drosophila melanogaster 50 Tbh FBgn0010329 FBtr0089999 3 1 1 109 X 7918327 7919582 TATTTACATGAAGCGCACG 58 7919655 7919673 TGTACAGCTGATCGATACG 58 NA Nonspecific Drosophila melanogaster 50 CG1531 FBgn0029985 FBtr0071098 2 1 1 87 X 7844742 7844760 ATTCCCAGCATATTAGCGG 59 7844808 7844907 ACGTAAAGTAATCCTGATCGAG 59 NA Drosophila melanogaster 50 l(1)G0155 FBgn0026664 FBtr0071093 2 1 1 121 X 7814713 7814731 TCAAACTATTCGCGTTGAG 58 7814816 7814923 AGTCATGAACTCGTTGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33666 FBgn0053666 FBtr0091645 1 1 1 78 X 6370846 6370923 TTCTTGACTACTCCGAAGC 59 6370786 6370804 TTCTTAGAACGGGAAAGCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3774 FBgn0029849 FBtr0070874,FBtr0070875 2 2 2 60 X 6116022 6116040 TCTTTACGCACATGTTACC 57 6116064 6116082 TGTTGGACTATATTGCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6986 FBgn0029723 FBtr0100551,FBtr0100552,FBtr0070714,FBtr0070713 2 4 4 92 X 4619145 4619163 CCAGCACTATGACTATCCC 58 4619218 4620278 GAGATGTAACCGAAACTGTC 58 NA Drosophila melanogaster 50 CG12179 FBgn0025388 FBtr0070695,FBtr0070694 3 2 2 165 X 4525985 4526061 CAGCCAATACTCGAGTTAGG 59 4525839 4525858 TGTCTGACCTTGTTGAAGAC 59 NA Drosophila melanogaster 50 CG14423 FBgn0029646 FBtr0070556 1 1 1 60 X 2839753 2839772 GTTCCTAACCTTCAAGAACC 58 2839794 2839813 GATAATGATCGGAATCACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14047 FBgn0040390 FBtr0070465,FBtr0070464 1 2 2 204 X 2262912 2262930 TTATAAAGCGTCGCAACTC 58 2262667 2262744 GATGGCTTGTCGTTATCCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG3655 FBgn0040397 FBtr0070181,FBtr0113327 3 2 2 132 X 970326 970476 ACAATCTTCAGGTCCATCC 58 970212 970230 GTTAGGTAAAGGTGCTGGA 58 NA Drosophila melanogaster 50 CG3703 FBgn0040348 FBtr0070187 2 1 1 231 X 837532 837556 GGAACTAGTACTAGCCTATTATAGG 59 836820 837343 CAAATGGGAATTGAGTCCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG14632 FBgn0029538 FBtr0070193 1 1 2 88 X 787264 787282 TCGTATACGCGATATGCTG 59 785610 785629 TTAACGTCTCTTCTGATTGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG5273 FBgn0040382 FBtr0070136,FBtr0070137,FBtr0070135 2 3 3 64 X 655011 655029 GAGACCTCTAACATGACCG 59 655057 655075 ACACAAATAATGCCTCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40728 FBgn0085769 FBtr0114219 3 1 1 68 U 9902227 9902245 TATTTACGTGAGGTCTCCG 58 9902177 9902196 GACTTCTGTGAATCATCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR41613 FBgn0085822 FBtr0114280 1 1 1 60 U 9112802 9112821 TGAAGATTGAGATAGTCGGG 58 9112761 9112779 CAGAACGAGCACATAAACC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41010 FBgn0085552 FBtr0113965 1 1 1 82 U 6449562 6449580 TTCGATATGCTCGAACTGG 59 6449498 6449516 CATCTGTTTCATCGTTGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hcf FBgn0039904 FBtr0089124,FBtr0089126,FBtr0089127,FBtr0089125 1 4 4 84 4 383495 383577 GTTGCTAGAAACAGACTCCA 59 383624 383642 TGTAGAACTGTGCAACGAG 59 NA Drosophila melanogaster 50 Cyp9f3Psi FBgn0038034 FBtr0082602 3 1 1 61 3R 8222141 8222159 TTACGCTACTTTCGTACCT 58 8222098 8222116 TTTACATAGGGCTCTACGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pri FBgn0053327 FBtr0082835 2 1 1 60 3R 9639342 9639361 TAAATCACAGATCTTCGCCA 59 9639384 9639402 CCAACTTCAGTACTGACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1499 FBgn0039852 FBtr0085791,FBtr0085792 1 2 2 84 3R 27386436 27386454 AGTGGATTCGGTTTACCAG 59 27386501 27386586 GTAAGAGTGGCATCTGTAGG 59 NA Drosophila melanogaster 50 CG1544 FBgn0039827 FBtr0085755,FBtr0113311,FBtr0085756 1 3 3 86 3R 27027533 27027613 CGAAGACTTTAACATCCATCC 58 27027661 27027679 CAATCGATCTTGACTCCGT 59 NA Drosophila melanogaster 50 Nlp FBgn0016685 FBtr0085552 3 1 1 237 3R 25830772 25831022 TCTACGGAGTCACTTTGAC 58 25835479 25835497 TTCGACTCGTAGAACTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG31202 FBgn0051202 FBtr0085510 2 1 1 60 3R 25755623 25755642 CCGTTTATGAACTGACATCC 58 25755582 25755600 CCGGTGAGGGAATATAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14507 FBgn0039655 FBtr0113305 1 1 1 71 3R 25052648 25052955 GATCATAGGGACACTCGAC 58 25052595 25052613 GAACTCCAGACGAATCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ligatin FBgn0041588 FBtr0085410 3 1 1 60 3R 24976481 24976500 CGAGCAATTTCTACAGACTC 58 24976440 24976458 TTCTTCAGGTCGATTTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr98c FBgn0046886 FBtr0085187 1 1 1 90 3R 23371394 23371463 TTATTTGGAGGGATGCTGG 59 23371517 23371535 GTCTGTAGCCGATTAGAGC 59 NA Drosophila melanogaster 50 CG5938 FBgn0046247 FBtr0113355,FBtr0085159,FBtr0085160 3 3 5 129 3R 23101495 23102020 GCAACATGACGGTATTTGG 59 23102113 23102131 AGGGATTTCTTCAGCACTC 59 NA Drosophila melanogaster 50 CG4956 FBgn0039370 FBtr0084920 3 1 1 61 3R 21603667 21603685 TATATTGGGCAACTGGTGG 59 21603624 21603644 CCAGAACTAAGCTATCGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31370 FBgn0051370 FBtr0084829 3 1 1 101 3R 21129281 21129300 CTCAGTTCTAAGGGAAACAC 57 21129363 21129473 AGACCATAATCTTTAAGGCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG31104 FBgn0051104 FBtr0084825 3 1 1 81 3R 21112345 21112363 CAAAGAGAATTGTGGGAGC 58 21112471 21112491 CCACCATTATAGGAAGAAAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG13646 FBgn0039255 FBtr0084751 3 1 1 161 3R 20774499 20774518 ATAGCTGATAACTTGCTGCA 59 20774642 20774796 TTTGAAGGAGAGGGATTCC 58 NA Drosophila melanogaster 50 CG13618 FBgn0039203 FBtr0084643 1 1 1 205 3R 20352623 20352757 GAACCGATCTGGATAAGCA 59 20352926 20352944 TAGTCGCATGTACTTGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13597 FBgn0039124 FBtr0084525 3 1 1 60 3R 19718472 19718490 AGGCTACTGAATCATTGGA 57 19718430 19718448 TTGTTAGATGCTCGAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31365 FBgn0051365 FBtr0084406 2 1 1 235 3R 18950904 18950991 CTATAACATCAAAGAAGACGGC 59 18950630 18950648 GTTGAGGACAACTGGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5791 FBgn0040582 FBtr0084180 2 1 1 110 3R 17913073 17913160 GTCTGACTTGTCCCAATCC 59 17913234 17913252 CATTTCCACGGGAAATGAC 59 NA Drosophila melanogaster 50 Cchl FBgn0038925 FBtr0084185 3 1 1 146 3R 17852269 17852287 AGGAGGTACTTAAGTGGGA 58 17852084 17852102 AGTCATGCCTATCGAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31431 FBgn0051431 FBtr0084137 2 1 1 84 3R 17697790 17697810 CGCATTTGGCTATTGATACTC 59 17697853 17698143 ACTCTGTGTTCTCTGTATAGTC 58 NA Drosophila melanogaster 50 lbl FBgn0008651 FBtr0084092 3 1 1 212 3R 17258988 17259006 AAACTTTGACGAAGAGCAG 58 17236494 17236800 AACCAAGTGATGACCTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG15690 FBgn0038825 FBtr0083957 1 1 1 60 3R 16581101 16581119 CTCCTACTTCGGAAACGAG 59 16581142 16581161 ATTAAAGAACGAAGTCTCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4288 FBgn0038799 FBtr0083888,FBtr0083889 1 2 2 155 3R 16333613 16333704 GGATTTGCCGTTAATCACC 59 16333476 16333494 GAAGATAATGCGCCATTCG 59 NA Drosophila melanogaster 50 CG4288 FBgn0038799 FBtr0083888,FBtr0083889 2 2 2 157 3R 16333614 16333706 CTGGATTTGCCGTTAATCAC 59 16333476 16333494 GAAGATAATGCGCCATTCG 59 NA Drosophila melanogaster 50 CG5835 FBgn0038682 FBtr0083751 1 1 1 118 3R 14977295 14977313 TTTAAACAAACCGCAGACG 59 14975339 14977213 AATCGTCGGAAGTATCCTC 58 NA Nonspecific Drosophila melanogaster 50 CG7718 FBgn0038649 FBtr0083682 2 1 1 123 3R 14570555 14570573 AACTGCTTGTCTGGATCAC 59 14570392 14570468 CATTTGGATGAGCCATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pxt FBgn0038538 FBtr0083507,FBtr0083508 3 2 2 110 3R 13546531 13546681 ACAAGTCTTGGCTCATGAC 59 13546755 13546773 CTTTGCTGAGGACTGAGAG 59 NA Drosophila melanogaster 50 CG12265 FBgn0038489 FBtr0083408 2 1 1 100 3R 12975816 12975834 GAAGATGATCCGTGGAAGG 59 12975897 12975977 TCCAGAAATTGTGATACGGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG4287 FBgn0038388 FBtr0083240 2 1 1 60 3R 11788823 11788841 CTGAAGATGATAAGGCCCG 59 11788781 11788799 GAATCAGTGATCTCCTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14868 FBgn0038330 FBtr0083109 2 1 1 76 3R 11194556 11194632 ACAAGACAATGTTGGATGC 58 11194498 11194516 AATGGTGTCCTCATTTGTG 57 NA DesignNoJunction Drosophila melanogaster 50 MRG15 FBgn0027378 FBtr0083125 3 1 1 87 3R 11103271 11103347 ATAATAAGAAAGGCAGCGC 58 11103202 11103220 GTGTTGCTATCCTTAGACG 57 NA Drosophila melanogaster 50 CG4210 FBgn0038302 FBtr0083049 1 1 2 80 3R 11039935 11040023 CAGAGGAAGATCTTAAACGAG 57 11040065 11040083 TATCGTTGTCTACAAGCAC 57 NA Drosophila melanogaster 50 CG9649 FBgn0038211 FBtr0082902 1 1 1 83 3R 10041784 10041802 TCCACGAACAGTACAATCC 59 10041652 10041737 AATCGCCAATATCAACGTG 58 NA Drosophila melanogaster 50 Dip-B FBgn0000454 FBtr0082832,FBtr0082833,FBtr0082831 1 3 3 192 3R 9609801 9609886 GAGAAGGTTCTCAAGGCTG 59 9610099 9610117 CCCTTGGATCATCGATCTG 59 NA Drosophila melanogaster 50 Cpn FBgn0010218 FBtr0082547 1 1 2 165 3R 7989482 7989500 TCCAATTACAGCTCCAGAG 58 7989269 7989354 ATCTGGTTCCGTAGTTTCTG 59 NA Drosophila melanogaster 50 CG14731 FBgn0037964 FBtr0082478 1 1 1 60 3R 7757623 7757643 GGGTATAGACTCTATTTCCCA 57 7757665 7758000 CAAGTCCCTTACTCGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6950 FBgn0037955 FBtr0082521,FBtr0082522,FBtr0082519,FBtr0082520 2 4 4 60 3R 7646624 7646642 TTCTCAGTAACTGGTTGGA 57 7646582 7646600 GGTTTCGAATCAGTTCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34114 FBgn0083950 FBtr0110808 1 1 1 85 3R 6871199 6871217 ATTGCCATTGAGTCACTCC 59 6871263 6872117 GTTTATATTCGCCATCAACCTC 59 NA Drosophila melanogaster 50 Bruce FBgn0037808 FBtr0082239 2 1 1 80 3R 6145490 6145508 GATTTGCTTATGATGCCCA 58 6145369 6145447 GTACACCAGGAAAGAAACAC 58 NA Drosophila melanogaster 50 Crc FBgn0005585 FBtr0082103 3 1 1 106 3R 5456247 5456265 GGATACGTGGATCTACAGC 59 5455891 5456177 AGGTCTGAATGCCTTTGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9427 FBgn0037721 FBtr0082104 1 1 1 109 3R 5451275 5451397 TGATCAGTGTGCCAATGAG 59 5451184 5451202 TGTACTGTTTGGTCACCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8436 FBgn0037670 FBtr0081977 3 1 1 83 3R 5085049 5085358 GCTCCTAGGATAAAGATCCA 57 5085404 5085422 AACAATGATCTCCTTGCCT 58 NA Drosophila melanogaster 50 CG18193 FBgn0037579 FBtr0081839 2 1 1 68 3R 4169721 4169739 TTGAGGAAGCAATTTCAGG 57 4169770 4169789 TATGTTATCCATACTGCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10435 FBgn0037539 FBtr0081820 2 1 1 79 3R 3837074 3837094 CAACGTATCAGTACTATGGGT 59 3836955 3837035 ATCTTCTTATCGTCGATACCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31559 FBgn0051559 FBtr0078616 2 1 1 81 3R 1976751 1981888 GAACTTCAAGGAGAAAGACCT 59 1976690 1976708 ACACTTCGTGTAGGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41461 FBgn0084022 FBtr0111219 2 1 1 60 3R 175903 175921 GCACTCGACTAATTCTTGC 58 175943 176173 TACAATTGATACCGATCCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11370 FBgn0037181 FBtr0078522 2 1 1 112 3L 22705670 22705689 TATATGCAGTATGTCCAGCC 59 22705764 22705847 TGATTGCAATCCTTCAGGT 59 NA Drosophila melanogaster 50 CG9063 FBgn0028500 FBtr0078512 2 1 1 210 3L 22253773 22253791 AGGCAGAGACTATCATCGT 59 22253331 22253349 AGTATTGGAAGCCATACGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33288 FBgn0053288 FBtr0078347 2 1 1 66 3L 21422450 21422468 TAAAGATTTGTGACGTCGC 58 21422498 21422988 AAGATTTCGTTGGAGTGTG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG7335 FBgn0036941 FBtr0074865 2 1 1 60 3L 20125849 20125867 CTTCGAATGTCGTAATCCC 57 20125807 20125825 GTTGAATTGTATGACCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Met75Cb FBgn0028415 FBtr0075116 1 1 1 63 3L 18462674 18462693 CGTATTCAATGGTTTCTTGC 57 18462630 18462648 TATCTGTGCATCCACAGAG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 W FBgn0003997 FBtr0075133 3 1 1 107 3L 18163175 18165161 AGAAACCACAGAGCTTCAC 59 18163086 18163105 ATTCGATTACACGTCTCCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13040 FBgn0036608 FBtr0075431 1 1 1 225 3L 16318777 16318860 CTTCATTGCTATCTGTGCC 58 16318570 16318588 AGCCACAGTCTTAATCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAP71E FBgn0036518 FBtr0075567,FBtr0075569,FBtr0075568 3 3 3 89 3L 15593707 15593796 TCAAGTTCAAGGTCTCTACG 59 15593848 15593866 AGTACTCATAGTTGTCGCG 59 NA Drosophila melanogaster 50 CG32147 FBgn0047178 FBtr0075647 3 1 1 63 3L 15136796 15136903 GCCATATCTTGTTATCCATGTC 58 15136754 15136773 CAGCTTCTCGATGTATACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Leucokinin FBgn0028418 FBtr0075722 1 1 1 60 3L 14553811 14553829 TGGCAAAGATAGTCCTGTG 59 14553769 14553787 CTGGCTCCATAGACTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8833 FBgn0036386 FBtr0075792 2 1 1 90 3L 13920553 13920572 CAAACTGAACTAGCCAAGGA 59 13920424 13920500 TCATAGCAGAAGGCAAGTC 59 NA Drosophila melanogaster 50 CG17672 FBgn0083978 FBtr0110982 2 1 1 247 3L 13022402 13022422 GGTGCTTAAGTAGAAGTTCTG 58 13028410 13028428 GTTCCAGTTGGAGAATGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG10754 FBgn0036314 FBtr0075944 1 1 1 74 3L 12806373 12806391 AGTTCTTCCTTCAGTTCGC 59 12806317 12806335 GTGCCCTATGTAGATTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nrx-IV FBgn0013997 FBtr0075999,FBtr0075998 1 2 2 81 3L 12146776 12146794 CGTGTGAACTTGAATCTCG 58 12146839 12147059 GTCCATCCGAGTAGAACTC 58 NA Drosophila melanogaster 50 CG7557 FBgn0036159 FBtr0076174,FBtr0076175 3 2 2 223 3L 11438776 11438857 AGATACTTTCTGCAGTCCC 58 11439044 11439062 AGGAGTGAGCATTTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8065 FBgn0036075 FBtr0076296 3 1 1 238 3L 10209382 10209460 TTCTGTTTCGCATCAAAGG 58 10210144 10210162 ATTTCATCAGATCGGAACC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6707 FBgn0036058 FBtr0076356,FBtr0076358,FBtr0076357 2 3 3 108 3L 9888976 9889075 ACATACTCGATTGCTTCGG 59 9888886 9888906 CTTTAAGGCGGAAATAGTAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6709 FBgn0036056 FBtr0076360,FBtr0113156 2 2 2 60 3L 9886557 9886628 ATGCGATACAAGAAATGGC 58 9886515 9886534 CCAAGTTATTTAGGACCTCG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG4080 FBgn0035983 FBtr0076494 3 1 1 135 3L 9383210 9383386 TAATAGACTGGCCCTTCTG 58 9382210 9383111 AGTAGAATTCTGTTGCGTG 57 NA Drosophila melanogaster 50 Dhpr FBgn0035964 FBtr0100531,FBtr0100532,FBtr0076531 2 3 3 89 3L 9128542 9128561 CATGAACCGTAAATGGATGC 59 9128613 9128631 TCTTGGGTCCACTTAAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Argk FBgn0000116 FBtr0076546,FBtr0112792,FBtr0076544,FBtr0076545,FBtr0112791,FBtr0076543 1 6 6 65 3L 9042989 9043007 AGATGGAAAGCAAGGTCAG 59 9042942 9042960 GGTAGAACTTGCCCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Prm FBgn0003149 FBtr0076596,FBtr0076593,FBtr0076594,FBtr0076595 2 4 4 222 3L 8727222 8727349 CGAAGTCAAGAACTTGTCC 58 8727018 8727036 GATGAGGTTCTTCTGGTCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13672 FBgn0035862 FBtr0110798 1 1 1 102 3L 8242040 8247971 ATGTCATAAGAGCCGAGAC 58 8248036 8248055 GAATTGTTGGAGAACTCGAC 58 NA Drosophila melanogaster 50 Atg18 FBgn0035850 FBtr0076693,FBtr0076692,FBtr0076691 2 3 3 124 3L 8181566 8181584 AATATCTGGTGTCCAGCTC 58 8181672 8182396 AAACGAGTAACCCATCCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG8368 FBgn0035707 FBtr0076976,FBtr0076977 3 2 2 61 3L 6600122 6600140 GAGATGATACTTCCACCGC 59 6600165 6600239 GGAATCTTGGCTATCTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myt1 FBgn0040298 FBtr0077118 2 1 1 76 3L 5771081 5771099 CACAAACCAAGGCAAATCC 59 5770965 5770983 CGTGTACATGAACGTACCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG10673 FBgn0035590 FBtr0077180 2 1 1 61 3L 5132166 5132184 CAGTTCATCCAGGAAACAG 58 5132123 5132141 TCCAGCAGACATTTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Teh3 FBgn0040697 FBtr0073257 1 1 1 60 3L 4184373 4184392 CCTGCATCCAGATCTATGTG 59 4184332 4184353 CAGTTCTGGAATATGAGATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12605 FBgn0035481 FBtr0073166,FBtr0073167 1 2 3 256 3L 3961756 3961774 GAACTCGCGTTCAATTCTC 59 3959843 3959861 AAATCACCTTGCCATCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10858 FBgn0035458 FBtr0073190 2 1 1 193 3L 3751227 3753056 TTCAATAGCGATTTCCTCTG 57 3748686 3748704 GAAAGCTAATCAAGGCCAG 58 NA Drosophila melanogaster 50 CG1291 FBgn0035401 FBtr0073023 2 1 1 64 3L 3145173 3145192 GTTCTCTTTCCAAGCATTCG 59 3145217 3145237 TGGAGATAGGAACAAGATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Spec FBgn0003470 FBtr0072789 2 1 1 134 3L 1781201 1781220 AAAGATCATAGAGGAACGCG 59 1779977 1781104 ATGGACGTTCTTGTCTCTG 59 NA Drosophila melanogaster 50 CG32320 FBgn0052320 FBtr0113433 3 1 1 86 3L 1400092 1400112 ACCAGTACTATCAGATCATGG 58 1400157 1400230 GTCTCATTGAGCTTATCTTCAC 58 NA Drosophila melanogaster 50 CG2277 FBgn0035204 FBtr0072729 3 1 1 60 3L 1306444 1306463 CTGATGAACATCTACAGTCG 57 1306403 1306424 TGCTCTTGAAATAGAGACTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3402 FBgn0035148 FBtr0072559 1 1 1 168 3L 652265 652451 CGGATTATGGCATCTATGTG 58 652116 652134 ACCAGCATGTTGAGTATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG12851 FBgn0035086 FBtr0072394 1 1 1 89 2R 20840516 20840586 CGAATTGGATTCAAACGGA 58 20840639 20840657 TCTTGCATAGAGCTCTTGG 59 NA Drosophila melanogaster 50 CG3907 FBgn0034958 FBtr0072195,FBtr0072196 3 2 2 98 2R 19908024 19908099 TTGAGAAAGAGATAACGCTG 57 19907945 19907963 TAATATTGCCCATGCTCTG 57 NA Drosophila melanogaster 50 l(2)efl FBgn0011296 FBtr0072100 1 1 2 259 2R 19572570 19572588 AAAGCATGAGGAGAAGCAG 59 19572267 19572285 AAAGGATTGAGTCCTAGGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13511 FBgn0034759 FBtr0071863 2 1 1 222 2R 18547262 18547280 GAAATGGTGACCGTAACCA 59 18547466 18547542 AGCAGCAGATATACAAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6613 FBgn0034694 FBtr0071758 3 1 1 97 2R 17993065 17993154 AGCACCACATTCAGATGTC 59 17993215 17993233 CGCTTACGTATTCGTTCAC 58 NA Drosophila melanogaster 50 CG13492 FBgn0034662 FBtr0071741,FBtr0071742 3 2 2 94 2R 17715211 17715301 AGACACGCATCATAAGTGG 59 17715135 17715153 ACAGTTTCCTGTTCCATCG 59 NA Drosophila melanogaster 50 CG10433 FBgn0034638 FBtr0071690 1 1 2 255 2R 17494114 17494195 AGTTACTACATGCTGCAGG 59 17493603 17493621 CATTCTTGCAATCCGAACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18375 FBgn0034606 FBtr0071622,FBtr0071623 1 2 2 105 2R 17109399 17109417 AATATCCTGACAGCAGCTG 59 17109240 17109330 ACTGATTGCGGTACATCAG 59 NA Drosophila melanogaster 50 king-tubby FBgn0015721 FBtr0089600,FBtr0089599 1 2 2 84 2R 17010146 17010164 ATCCTTCACGGTCTTTGAC 59 17010209 17010287 GTTGGTGTCATAAATGATGACG 59 NA Drosophila melanogaster 50 CG34202 FBgn0085231 FBtr0112395 1 1 1 76 2R 16640463 16640481 CTCCACCAATGATCTGGAC 59 16640521 16640539 CGCTATTGGCCTCATACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp56c FBgn0046879 FBtr0086478 2 1 2 106 2R 15587995 15588094 GATTGCTTTGTGAGCTGTC 59 15587907 15587926 TTCTCATGCTGTATGATCGT 58 NA DesignNoJunction Drosophila melanogaster 50 mip40 FBgn0034430 FBtr0086560 1 1 1 67 2R 15178917 15178935 GTACCTCCGATCTTCTGTC 58 15178868 15178886 ATGCTTTATCCAGTGTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rhi FBgn0004400 FBtr0086897 1 1 1 60 2R 13519493 13519511 GTACTTCGAGAGCTTGAGG 59 13516245 13519469 GTACAAACCCGGTACTAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG30093 FBgn0050093 FBtr0087199 3 1 1 131 2R 11831773 11831791 CCAAGTACGAGTACCTGAG 58 11831886 11831904 TTTAATCCTCCTCAGCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha36 FBgn0022097 FBtr0087335 3 1 1 68 2R 11429524 11429542 GATCAAGATCACCAACCGT 59 11429574 11429592 AAAGTCCTATCGATTCGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hr51 FBgn0034012 FBtr0114456 1 1 1 113 2R 11226338 11226419 ATAACAAAGGAGGAGCTGG 58 11226496 11226514 GAGAACTATCGCCTTGAGG 59 NA Drosophila melanogaster 50 Arf51F FBgn0013750 FBtr0087377,FBtr0087375,FBtr0087379,FBtr0087376,FBtr0087378 2 5 5 166 2R 11211495 11211514 CTATTACACGGGTACACAGG 59 11211643 11211715 GTTTCATTGCATCAGGCAG 59 NA Drosophila melanogaster 50 CG8152 FBgn0034008 FBtr0087392 1 1 1 60 2R 11198381 11198399 CGTGAGTTCTACAAGGAGG 59 11198339 11198358 TACTTGGAAGGTTAGGTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8090 FBgn0033995 FBtr0087404 1 1 1 82 2R 11087677 11087695 TGAATCCTTCCAAACCCAG 59 11087554 11087631 TTGATTGATGTCTTCGCCA 59 NA Drosophila melanogaster 50 AttA FBgn0012042 FBtr0087437 1 1 1 262 2R 10634905 10634923 ACAAGCATCCTAATCGTGG 59 10635149 10635231 TGACCAGCATTGTTGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(var)2-HP2 FBgn0026427 FBtr0087502,FBtr0087501 2 2 2 81 2R 10498985 10499138 ACAAGTTAAACCAGCTCGA 59 10498922 10498940 TTCTGACTCCGTCTTTGAG 58 NA Drosophila melanogaster 50 CG17386 FBgn0033936 FBtr0087488 1 1 1 60 2R 10310291 10310310 TTTCGCCTATATCTTCTGCT 58 10310333 10310351 CTGCTTATACCAGACACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vg FBgn0003975 FBtr0087785 3 1 1 82 2R 8774680 8774700 GGTGCCTACTATCCATATCTG 59 8774743 8778988 TACAAATCCTGGTTGAACCT 58 NA Drosophila melanogaster 50 Cpr49Ae FBgn0033728 FBtr0087920 3 1 1 95 2R 8291003 8291680 TACAACTATGCCTATGAGACG 59 8291737 8291755 GATGATCACGTCACTGGAG 59 NA Drosophila melanogaster 50 Cpr49Aa FBgn0050045 FBtr0113359 3 1 1 136 2R 8264211 8264291 CACACTGCTCTTCATAGCA 59 8264391 8264409 GATACTTGTAGGAGCCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13160 FBgn0033720 FBtr0087911 2 1 1 80 2R 8262316 8262386 TGGAACTTTCTAAGGACGA 57 8262430 8262448 CATGTGGACTGACATAGTG 57 NA Drosophila melanogaster 50 CG8378 FBgn0027495 FBtr0087983 2 1 1 119 2R 8029885 8030015 CTACGACAATTACGGTGCT 59 8030096 8030116 AACATAGGATAGTTCAGCTCG 59 NA Drosophila melanogaster 50 CG8271 FBgn0033657 FBtr0088032 3 1 1 103 2R 7737359 7737479 GTACTCACAGGTATTGGAGG 59 7737545 7737563 GAAACGCAGATTCCATTGG 59 NA Drosophila melanogaster 50 CG8800 FBgn0033408 FBtr0088555 2 1 1 71 2R 5283261 5283279 CATTAAGCAGATATCCGGG 57 5283154 5283172 ATTAGGTTGTAGCTGAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8232 FBgn0033352 FBtr0088654 3 1 1 82 2R 4818147 4818225 CCATAAGTGATGAGAACTCC 57 4818268 4818288 CCCAAAGATCTTACTGATGTC 58 NA Drosophila melanogaster 50 CG8248 FBgn0033347 FBtr0088678 1 1 1 83 2R 4807087 4807105 TTATTTACCTGTTCGCCCT 58 4806965 4807040 TGTTCTGCGACTTGTAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8734 FBgn0033315 FBtr0088728 3 1 1 60 2R 4514522 4514541 CATGCAGTCCCTGTATATCC 59 4514481 4514501 GTCCACTTTCAGCATATACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp4e2 FBgn0014469 FBtr0088745 3 1 1 120 2R 4333713 4333731 AACTGTACGAAGAGGTCTC 58 4333814 4333893 TCCTTAAATAGTTTGCGCTG 58 NA Drosophila melanogaster 50 CG34216 FBgn0085245 FBtr0112409 1 1 1 179 2R 3591903 3591923 GACTTTGGAGATGTATTGCTC 58 3591416 3591763 GCTTTGCATAAAGGGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2144 FBgn0033187 FBtr0088904 3 1 1 81 2R 3408120 3408198 CCATCGGAGTGATTACTACAC 59 3408241 3408259 ATCGCCTTCTCTTAAAGGG 59 NA Drosophila melanogaster 50 CG12828 FBgn0033145 FBtr0112770 1 1 1 155 2R 3037040 3037058 ATACTGTCCCATTGTGTCG 59 3036847 3036923 GTTTACCACTAGGAACAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1294 FBgn0033030 FBtr0086035 1 1 1 60 2R 1552908 1552927 TTCAACGATCATATTCGTGC 58 1552949 1552968 TACATCCGGAGATTTGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30441 FBgn0050441 FBtr0086093 3 1 1 143 2R 1239551 1239569 GAGTTGAGCATCCAAACCT 59 1239426 1239444 CCTTATCGACATCTTTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Atf6 FBgn0033010 FBtr0086081,FBtr0086079 3 2 3 154 2R 1036542 1036563 CAACGTATGATTAAGAACCGAG 59 1040309 1040328 AGCAGAAATATCTGATCCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG41442 FBgn0084007 FBtr0111281 2 1 1 60 2R 972181 972201 ACTATTTGCTCTACCCTATCC 58 972222 972241 AAATCGTACAGCTAGATCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33828 FBgn0053828 FBtr0091832 1 1 1 60 2L 21476754 21476773 GGTCAATGGAAAGCTTATCC 58 21476796 21476814 CGACAGTTTGAAAGATCCA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33813 FBgn0053813 FBtr0091817 1 1 1 60 2L 21451504 21451523 GGTCAATGGAAAGCTTATCC 58 21451546 21451564 CGACAGTTTGAAAGATCCA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Catsup FBgn0002022 FBtr0081143 3 1 1 60 2L 19042312 19042386 AAGCCGGATTTGGATATGAG 59 19042408 19042427 TGATAAGAAGAGTTGAGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17323 FBgn0032713 FBtr0081104 3 1 1 254 2L 18825167 18825251 AATTACTATCGGTTCCCGC 59 18825467 18825487 CCCAACTAATCAGGATCACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15144 FBgn0032648 FBtr0080992 3 1 1 92 2L 17528322 17528340 GAGTTGAAGAACAAGTGCG 59 17528190 17528268 AGAAGATTCCCTATAGAGGGT 58 NA Drosophila melanogaster 50 CG15141 FBgn0032635 FBtr0080979 2 1 1 60 2L 17412856 17412874 GCTTTACAAGGAACTTGCC 59 17412898 17412916 GTACGTCTTAGCCGAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13277 FBgn0032599 FBtr0080934 2 1 1 60 2L 16742960 16742978 CAACAATGACGGTAAGGAG 58 16742918 16742936 CAAGTACTTGGAGAGGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4793 FBgn0028514 FBtr0080794 2 1 2 112 2L 15926181 15927003 AATTGGCCCTCCATAATCC 59 15927078 15927097 GATTCTGATTCGGTGTTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG34165 FBgn0085194 FBtr0112356 3 1 1 103 2L 14714009 14714027 ACGATTTGAAGGTGGTCTG 59 14714094 14714112 GACCTCTGAAGATGACACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33090 FBgn0028916 FBtr0080624 2 1 1 184 2L 14343685 14343760 AATGATGAAACCCTTCCCG 59 14343908 14343926 TTGTACATGCGGTATTCGT 59 NA Drosophila melanogaster 50 CG32970 FBgn0052970 FBtr0114461,FBtr0080622 3 2 2 79 2L 14309126 14309144 CAACACTTTATACCGCTGC 59 14309420 14309438 TTAGGCTGGCTTTCTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 Ance-3 FBgn0032536 FBtr0100327 3 1 1 98 2L 13916557 13916632 TGGATAGGTATAATCGCCTG 58 13916693 13916711 TGTAGTGAAGATCGCACTG 59 NA Drosophila melanogaster 50 CG9305 FBgn0032512 FBtr0080471 3 1 1 104 2L 13372248 13372320 AAACCCTAAGAAGCGTTCC 59 13372162 13372180 AGCTTTGTACTCGTTACGT 58 NA Drosophila melanogaster 50 CG9306 FBgn0032511 FBtr0080472 3 1 1 75 2L 13370420 13370438 AGAAGGAGTTTGTGACCTG 59 13370363 13370382 TAAGATTAGTGGTGTCCCAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG16820 FBgn0032495 FBtr0080452 2 1 1 146 2L 13249403 13249421 AATTTCACCGATAACGGCT 59 13249531 13249614 CTTGATGTTGTCGATGGTG 58 NA Drosophila melanogaster 50 Cry FBgn0005664 FBtr0080281 1 1 1 76 2L 11944243 11945003 GACATACTTGTTGCTCTGC 58 11945043 11945061 TAAGATCGATTGGACGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6488 FBgn0032361 FBtr0080248 1 1 1 81 2L 11497784 11497802 GAGTTCTTTAAGACCGCTG 58 11497663 11497739 GTCGCTGATCTTATTGTGC 58 NA Drosophila melanogaster 50 CG6495 FBgn0027550 FBtr0080114 1 1 1 60 2L 10764352 10764370 ACGATGAGGAAACGTACAC 59 10764449 10764468 TTGACCTTCTTGTGTTTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5640 FBgn0032207 FBtr0080077,FBtr0080075,FBtr0080076 3 3 3 80 2L 10275747 10275765 TGCTTTCCTAGCATATCGC 59 10275618 10275705 TGATATAAGACGCCGATTGAG 59 NA Drosophila melanogaster 50 hoip FBgn0015393 FBtr0079846 3 1 1 70 2L 9699937 9700018 GACTGAGGAAGTTAATCCCA 58 9700051 9700069 GCAAGTTCATGATCTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cks30A FBgn0010314 FBtr0079799 2 1 1 60 2L 9331061 9331081 AAGGACATTTACTACTCCGAC 59 9331102 9331193 AAACCACATGTCTGTACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13398 FBgn0032042 FBtr0079710 2 1 1 60 2L 8414642 8414660 CTCTTCTCCTTCGAAGCAG 59 8414600 8414618 CTCGAAACGTGTAGATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13384 FBgn0032036 FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079658 2 4 6 231 2L 8385087 8386224 ATACAGTCAGTATTCCCGA 57 8386516 8386535 TTATAGGACTTATCCGTCGA 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079622 1 1 4 84 2L 8244491 8244977 CGGAGAAGGTAAACCTCTC 59 8244425 8244443 TTCTTCTCGTTTAGGCGAC 59 NA Drosophila melanogaster 50 CG31906 FBgn0051906 FBtr0079412 1 1 1 207 2L 7225793 7225811 TACAATGCCGATAAGTCGG 59 7225060 7225622 CATGGTTGCCATTGATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ppk14 FBgn0031803 FBtr0079252 2 1 1 208 2L 6355790 6355906 GTTTCTGGCTAACAGTGGT 59 6356078 6356096 CATATACTTCTGGCCCTCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG31644 FBgn0051644 FBtr0079159 2 1 1 60 2L 5818141 5818159 TTACTCCACTTACGATCCC 58 5818099 5818117 CGATAGGTATCCTCCACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12512 FBgn0031703 FBtr0079077 2 1 1 144 2L 5339563 5339581 CTTTCTAAACGCCCATCCA 59 5339375 5339393 ATAGGCCTTTAAGGTCTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15436 FBgn0031610 FBtr0077442 2 1 1 60 2L 4464826 4464846 TGCCAGTTTCTATAAGCAGAG 59 4464868 4464886 TCACTTGTGTATCTCGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpb FBgn0011570 FBtr0077881 1 1 1 60 2L 1705700 1705719 TATGCCTTCGATCAGTACAG 58 1705742 1705760 ATAGGTAGACGGAGGAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11601 FBgn0031244 FBtr0078137 1 1 1 60 2L 282366 282384 CTTTACATCATCTGGCTGC 58 282324 282342 GAATGGGATACACCCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mir-11 FBgn0046832 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG8945 FBgn0030815 FBtr0074411 3 1 1 123 X 16978206 16978224 CAGATTTGGCGTCTAAAGC 59 16978000 16978119 CATCCGTAAGACCTCTGAG 58 NA Drosophila melanogaster 50 Traf3 FBgn0030748 FBtr0074275,FBtr0074274,FBtr0074273 1 3 3 89 X 16310687 16310705 AAACTGGAAGAGTCCAAGC 59 16310758 16310836 TATATCCAGCCGTAGAGCA 59 NA Drosophila melanogaster 50 CG4239 FBgn0030745 FBtr0074270,FBtr0074269,FBtr0074268 2 3 3 243 X 16281095 16281113 AATGTTTCCGTTCTTCGAC 58 16281320 16281395 GTAGAAGACGACGTACCAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15604 FBgn0030713 FBtr0074157 1 1 1 60 X 15845182 15845201 GTAGTGAGTCATCTCAAGGG 59 15845141 15845162 GGTTTACGGTGATTAAGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Stim FBgn0045073 FBtr0074161,FBtr0074160,FBtr0074159 1 3 3 80 X 15829503 15829521 AGAATGTTCTGTACGGTCG 59 15829367 15829460 TAATACGTGCTCTAGAACCC 58 NA Drosophila melanogaster 50 CG2061 FBgn0027498 FBtr0073429 3 1 3 218 X 10986709 10986727 ACAAACATTCTCGTCCCTG 59 10987088 10987106 AAGGGATTCTTCAGGTAGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 ras FBgn0003204 FBtr0071496,FBtr0071494,FBtr0071495 1 3 3 90 X 10641989 10642007 CTACCCTATTTGGAGTGCG 59 10642057 10642150 GGCCATTATAGATCATATCCCTC 59 NA Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274 2 10 10 164 X 8768354 8768372 GGATGAGAACGAGAACGAG 59 8768131 8768227 TCTTGTTTCAGAGCCTTGAG 59 NA Drosophila melanogaster 50 Marf FBgn0029870 FBtr0070909,FBtr0070910 1 2 3 124 X 6263370 6263389 TGGAGTTTAAGTTCAGCTGG 59 6263476 6263563 TACGCTGTGTCCAATACTG 59 NA Drosophila melanogaster 50 fs(1)M3 FBgn0005390 FBtr0070892 1 1 1 83 X 5856877 5856895 TGATCTGATCCGAACTGTG 59 5856761 5856833 ACACTTAGATCTTCATCTGGAG 59 NA Drosophila melanogaster 50 CG4857 FBgn0026083 FBtr0070643 3 1 1 109 X 4015176 4015194 CAATCAGTTCGACTTGGAC 58 4015267 4015502 TCTGAGGATCCAATTGCTC 59 NA Drosophila melanogaster 50 CG12498 FBgn0040356 FBtr0070489 2 1 1 60 X 2704472 2704490 TTAACCAGGCCATAAGTCC 58 2704514 2704532 TACAGTTCGACCTTCTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4293 FBgn0024983 FBtr0100475,FBtr0070090,FBtr0070089,FBtr0100476 3 4 4 159 X 422615 422634 CTTTCACCACCATATACGCT 59 422414 422432 AAGGTTACTAGGTGATCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG41497 FBgn0085658 FBtr0114103 1 1 1 60 U 1683934 1683952 TCATCAATTTGGTTGGCAG 58 1683892 1683910 GTTGCATGATAGCTGTGAG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2126 FBgn0039876 FBtr0085857 1 1 1 86 3R 27601402 27601477 GTTGATCTATTACTCCTTTCCG 58 27601337 27601355 GTTTGATCCAGTTTGAGGG 58 NA Drosophila melanogaster 50 PH4alphaEFB FBgn0039776 FBtr0085650 1 1 1 122 3R 26310458 26310953 CCACCGTTCTATTCTATATGAG 57 26311034 26311054 CATCTCTATGGAGATTCATCC 57 NA Drosophila melanogaster 50 CG7593 FBgn0039687 FBtr0085461 1 1 1 60 3R 25550536 25550556 CAAACAGAGATTTGTGGAGAC 59 25550496 25550514 GTAGCTCAGAGATTCGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6195 FBgn0038723 FBtr0083803 1 1 1 122 3R 15473741 15473759 ATTTGATGTGCTCAAGAGC 58 15473584 15473655 GTGAACTCATAGTTTGCCG 58 NA Drosophila melanogaster 50 vib FBgn0026158 FBtr0083745 1 1 1 89 3R 15044180 15044198 AGAGATAGTGCACATCGAC 58 15044046 15044127 TTCTTTGACTGGTAGGTGG 58 NA Drosophila melanogaster 50 CG17836 FBgn0038661 FBtr0083701,FBtr0113246,FBtr0083702,FBtr0083703,FBtr0083700 3 5 5 92 3R 14751507 14751633 AATGATGATCGGTTCGAGG 59 14751689 14751707 CTCTACGATGTCTGCATGG 59 NA Nonspecific Drosophila melanogaster 50 CG14883 FBgn0038432 FBtr0083291 1 1 1 80 3R 12282428 12282522 CAGCCATTAAGAAGTGCCT 59 12282566 12282584 CGACTATTTCACCACAGGA 58 NA Drosophila melanogaster 50 CG34404 FBgn0085433 FBtr0112669,FBtr0112668,FBtr0112667 2 3 3 60 3R 11191520 11191538 TGAATCCGGAGAAGATCCA 59 11191416 11191497 GACCAGATTAATTTGCTCGT 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG6499 FBgn0038309 FBtr0113238 3 1 1 92 3R 11073839 11073912 CACCAGCTCCATCTATTCC 59 11073765 11073783 GTAATGGACACTAGGGAGC 59 NA Drosophila melanogaster 50 CG9588 FBgn0038166 FBtr0082849 2 1 1 76 3R 9501449 9501531 GAAAGAGCTGGTCTCTGTG 59 9501391 9501409 AGATCTCCCTTGAAGTTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Fmr1 FBgn0028734 FBtr0082200,FBtr0082198,FBtr0082199 1 3 5 192 3R 5930726 5930803 GTTTCGAATCAAGATCGCTG 59 5930471 5930489 AAGCTGCTGATCAATCTCC 59 NA Drosophila melanogaster 50 CG8436 FBgn0037670 FBtr0081977 2 1 1 83 3R 5085049 5085359 GCTCCTAGGATAAAGATCCAG 59 5085404 5085422 AACAATGATCTCCTTGCCT 58 NA Drosophila melanogaster 50 CG40057 FBgn0058057 FBtr0111158 1 1 2 108 3L 24518814 24518832 AATGATTATGTCGCCACAC 58 24518724 24518742 ATAACAGTTCGCGGTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075003 1 1 11 85 3L 19292231 19292507 ATATTTATGCAACCAGCGC 58 19292164 19292182 TATGTCCTTCACATGCTCG 59 NA Nonspecific Drosophila melanogaster 50 CG7441 FBgn0036763 FBtr0075141 2 1 1 88 3L 17843610 17843628 AGTCCCGTCTTCTAAAGGA 59 17843679 17843886 ATGAGTGGACTTGTAAAGCA 59 NA Drosophila melanogaster 50 Eig71Ea FBgn0004588 FBtr0075587 2 1 1 84 3L 15642348 15642429 CTAAATTGCTTGGGTTGGC 59 15642282 15642300 ACTATTAAGTACGCCTGCG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 Prosbeta2 FBgn0023174 FBtr0075629 2 1 1 135 3L 14993472 14993756 AACATATACTGCTGTGGAGC 59 14993854 14993872 GCTTCAACATCGTATTGGC 59 NA Drosophila melanogaster 50 CG6038 FBgn0036198 FBtr0076123 2 1 1 174 3L 11704185 11704203 GTGCGGAGAAGTTTAACTG 58 11703973 11703991 CATCCTTCGTATTTGTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32373 FBgn0052373 FBtr0076806,FBtr0076805 1 2 2 80 3L 7750857 7750940 CTGTAATGATATCGACGAGTG 58 7750980 7751000 CATATGAATTCACCAGGAAGG 58 NA Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133 1 5 11 192 3L 3578467 3593333 TTGCAGATATGGAGACTGG 58 3593488 3593507 CTGTTTGTTCAGAAAGACCT 57 NA Drosophila melanogaster 50 sls FBgn0086906 FBtr0072849 3 1 2 81 3L 2046157 2046292 CGTATTTGAACGTCCTGGA 59 2046094 2046112 GTCAGGAGTATGAATCGGC 59 NA Drosophila melanogaster 50 CG13924 FBgn0035286 FBtr0072835 3 1 1 60 3L 1870668 1870687 AAGAGTCTAACCAATCTGCT 58 1870710 1870728 CATTTAAGGTGCGTTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13923 FBgn0035277 FBtr0072783 1 1 1 129 3L 1803449 1803468 GATCTACAACTTCGAGTTCC 57 1803560 1805020 GACATCGTAGACTTGACTG 57 NA Drosophila melanogaster 50 CG1233 FBgn0035137 FBtr0072549,FBtr0072548 3 2 2 135 3L 364779 364797 ACACCTGTGATCATGAGAC 58 364896 364975 TGAAGGTGTATCCGAAAGG 58 NA Drosophila melanogaster 50 CR33471 FBgn0053471 FBtr0088081 2 1 1 60 2R 7586961 7586979 GTGAGAACAGTGTCTTCAG 57 7586919 7586938 ATAGACGAACATATCCATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mlp60A FBgn0011643 FBtr0072180 1 1 1 143 2R 19962571 19962589 TACTTCACAGAGTACCTCC 57 19962825 19962843 TTGTGGAATTTGTAGCCTC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG17390 FBgn0033939 FBtr0113081 3 1 1 176 2R 10347958 10347976 CTTGAAGCATCACGTACAG 58 10349608 10349702 ATCTTCAAGTGGTCACTCC 58 NA Drosophila melanogaster 50 Dp FBgn0011763 FBtr0087740,FBtr0087741 3 2 2 84 2R 9114280 9114362 CCTATTGGGACTGGATAAGG 58 9114408 9114427 GTATTTGGCAAGGTTTGGAG 59 NA Drosophila melanogaster 50 vis FBgn0033748 FBtr0087945 3 1 2 87 2R 8396972 8397090 CAGTGTCATCTACAGCTGG 59 8396903 8396921 GATCATGGTTGCTTGAAGC 59 NA Nonspecific Drosophila melanogaster 50 CG12902 FBgn0033512 FBtr0088356,FBtr0088357 2 2 2 61 2R 6242540 6242558 CAAGGCCAAGAAGTAGGAC 59 6242497 6242518 GCTTGGATGATTGATATTACCG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 cdc2rk FBgn0013435 FBtr0088429 1 1 2 98 2R 5955815 5955890 CTATGGAATTGTCTATCGCG 58 5955736 5955754 CTAATTGGCAGACCATCCT 59 NA Drosophila melanogaster 50 bft FBgn0041606 FBtr0080320 1 1 2 112 2L 11960349 11960410 TTGAGTGTGATTACGCCTC 59 11960255 11960273 TTATCTTCGACTTCTGGCC 59 NA Drosophila melanogaster 50 CG17715 FBgn0041004 FBtr0111245 3 1 6 176 2L 22737570 22741711 TTATACGAGAGTCAACTGGC 59 22741970 22742039 AATGCTGTACAATTGACCTG 58 NA Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445 3 8 8 80 2L 20877196 20877215 TCTGCAAGAAGATACCAGTG 59 20877070 20877156 AAATATACTGGGTACTCAGTCC 58 NA Drosophila melanogaster 50 VhaSFD FBgn0027779 FBtr0080941 2 1 3 121 2L 16724986 16725902 GTGTGATACCGAACAACGA 59 16724883 16724901 GATACGGATCAGAGTGCTG 59 NA Drosophila melanogaster 50 CG31824 FBgn0051824 FBtr0080789 2 1 1 109 2L 15886794 15887912 ACTTGGGAAAGATACAAGC 57 15887984 15888003 AATCTGTGAACGATATCGAG 57 NA Drosophila melanogaster 50 CG3994 FBgn0028516 FBtr0080715,FBtr0080714 3 2 2 60 2L 15229860 15229878 TCACGATCATGAAGGATGC 59 15229657 15229677 TAGTGCATATAGTTGGGAGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9008 FBgn0028540 FBtr0080577,FBtr0080576 2 2 2 157 2L 13775381 13775399 GAATCCTTGGATCGATCGA 58 13775035 13775262 CCTCGATGATAATCTGAAGGA 58 NA Drosophila melanogaster 50 CG3841 FBgn0032131 FBtr0079836 2 1 1 60 2L 9591154 9591173 GTTTAACCAGCTGGTTTACC 59 9591321 9591339 ATATCCGTGCTGTTTAGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34310 FBgn0085339 FBtr0112506,FBtr0112507 1 2 2 96 2L 6674206 6674224 ACTGAAACTAGTGGAACCA 58 6674356 6674374 GTCGATCCAATACCGATGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 syt FBgn0004242 FBtr0077727,FBtr0077728 1 2 4 80 2L 2793375 2793393 GGAAAGGGTAAGAAGGGTG 59 2793250 2793333 TTCCTCCATATCAGGTTTCTC 58 NA Drosophila melanogaster 50 Ent1 FBgn0031250 FBtr0078095 2 1 2 80 2L 357474 357492 CTACCTCGTGTTCTACCTG 58 357181 357431 TACTTCCAGTAATCTTCCGC 59 NA Drosophila melanogaster 50 CG31973 FBgn0051973 FBtr0113416,FBtr0078163,FBtr0078164 2 3 4 92 2L 38598 38618 CGATGGTATTATTCACCAAGC 59 35204 38544 GACTCAACTCTATAGGCGG 58 NA Drosophila melanogaster 50 skpD FBgn0026174 FBtr0074796 2 1 1 60 X 19707138 19707156 TGTTCGAAATTACAGTGGC 58 19707180 19707198 CAACAGAGATCCTCTAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS10b FBgn0031035 FBtr0074732 2 1 2 105 X 19492110 19492199 ACGGGAGTATTACGATACG 58 19492495 19492513 AAGAGGTACTCGTAGATCG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Andorra FBgn0030898 FBtr0074591 2 1 1 60 X 18072904 18072922 GCTAATCGGCTATTTCCCA 59 18072862 18072883 CCTATATTCCACATAGAGCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18210 FBgn0030636 FBtr0074081 3 1 1 152 X 15314087 15314105 ACAAGAAGATCCTCTCCAG 57 15305094 15305112 CATCCTTGACAAACTTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3191 FBgn0023525 FBtr0070417 3 1 1 148 X 2145346 2145364 TACCAGTGCATGTTTGGAG 59 2145116 2145235 GGTAGAATGTCTGCGTAGTC 59 NA Drosophila melanogaster 50 CG14780 FBgn0025383 FBtr0070257 3 1 1 228 X 1366670 1366688 CCTTCAGGAGAATCAGCAG 59 1366939 1366957 CAGAACCACTACGAATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34433 FBgn0085462 FBtr0112734 2 1 1 60 3R 26475791 26475811 GCTCTTTCTGTTCTATACCCT 58 26475833 26475851 GATGTGATATCCCATGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14512 FBgn0039639 FBtr0085413 3 1 1 60 3R 24964036 24964054 AGAGCAGTACAATTTCCGG 59 24963994 24964013 TCCAATAATTAGGTCTGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33204 FBgn0053204 FBtr0089470 1 1 1 108 3R 24741129 24742159 TAGACGATCGAAGAGATCTG 58 24742230 24742248 GAGTATTTGTTCTCCAGCC 57 NA Nonspecific Drosophila melanogaster 50 CcapR FBgn0039396 FBtr0084983 3 1 1 61 3R 21750438 21750458 CGAATCCACTAATCTATTGCC 58 21750306 21750415 CGGAAAGCGACTTAATGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31224 FBgn0051224 FBtr0083691 1 1 1 92 3R 14478940 14479022 GAGTGAGTCGGTTTATGGG 59 14478866 14478884 GGATAATAGTCCTGTCGCC 59 NA Drosophila melanogaster 50 sxe2 FBgn0038398 FBtr0083225 1 1 1 116 3R 11911739 11911757 GTACGATCTTTATACGCCC 57 11911837 11911921 TGAATGGAGACCCTAACTG 58 NA Drosophila melanogaster 50 pum FBgn0003165 FBtr0081994 3 1 5 106 3R 4982876 4982894 TGGATTACATCACTGGCTG 59 4906735 4924427 GAAACAGTTGTTGATTGTGG 57 NA DesignRelaxed Drosophila melanogaster 50 CG6897 FBgn0036800 FBtr0075108 2 1 1 66 3L 18616835 18616853 TAGAAACCTATGCGGACTG 58 18616883 18616901 AAGTTTCCTCTTTCCCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 exex FBgn0041156 FBtr0076751 3 1 1 296 3L 7942377 7943260 CATGTCGAGATCAGAGTCG 59 7943520 7943673 TTATGACCCATGGGTATCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4835 FBgn0035607 FBtr0077148 3 1 1 60 3L 5476259 5476277 AAAGACCACTACTACCGAG 57 5476301 5476319 AGCTGTAGTTGATTCTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nAcRbeta-64B FBgn0000038 FBtr0073299 2 1 2 121 3L 4433347 4433365 TTGGTTTGGTACGACTACC 59 4433449 4433623 CCATCGGCATTATTGAAGAG 58 NA Drosophila melanogaster 50 CG12605 FBgn0035481 FBtr0073168 2 1 3 74 3L 3959966 3959985 ATAGTATTCAGCCCATGGAC 58 3959843 3959861 AAATCACCTTGCCATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DptB FBgn0034407 FBtr0086621 2 1 1 70 2R 14754987 14755006 GCTTATCCCTATCCTGATCC 58 14755039 14755113 AAATTGGGAGCATATGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8303 FBgn0034143 FBtr0087119 3 1 1 130 2R 12484043 12484061 AAGTGCAAGGGCTATATCC 59 12483878 12483951 GTTCCATAAACAATCGATGGC 59 NA Drosophila melanogaster 50 CG8192 FBgn0034030 FBtr0087354 1 1 1 143 2R 11433074 11433092 CCTAAAGATCCAGGGACAG 58 11432885 11432969 GCATAGTATCCAGAGTTTCTG 57 NA Drosophila melanogaster 50 CG8738 FBgn0033321 FBtr0088705 2 1 1 105 2R 4584622 4585167 GATCAGATAGAGGAGGGTC 57 4585236 4585254 CATCCAGCTGGTAGTAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3107 FBgn0033005 FBtr0086078,FBtr0086077 3 2 3 125 2R 979866 979885 GTAGCGACATTTATGAATGC 57 979973 980041 CAGGTTTGGTCTGAATACG 58 NA Drosophila melanogaster 50 CG33552 FBgn0053552 FBtr0091522 3 1 1 61 2L 16682858 16682876 AAAGAAGATCGCCGAAGAG 59 16682899 16682919 CTCCGGTAACCTCATAATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sfmbt FBgn0032475 FBtr0080492,FBtr0080491 1 2 2 109 2L 13172240 13172323 TCGGATTGGTTCTGTTACC 59 13172149 13172167 AATGTACGAGAGTCGTAGC 58 NA Drosophila melanogaster 50 Hand FBgn0032209 FBtr0080073 1 1 1 92 2L 10294480 10294499 AGCACTGTTTGAAATCAGAG 58 10292795 10292813 GAATAAGTTCCGATGCCCA 59 NA DesignNoJunction Drosophila melanogaster 50 Ts FBgn0024920 FBtr0077679 3 1 1 60 2L 2968691 2968709 ATCATTAAACGTCAGGTGC 58 2968649 2968668 CGACTATCTGAAAGTCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33923 FBgn0053923 FBtr0091927 1 1 1 81 2L 1341635 1341653 TTGCCCGTTACCTTTACAG 59 1341504 1341591 TCCACAATGATATCGTGGTC 59 NA Drosophila melanogaster 50 tRNA:K2:42Ad FBgn0011890 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 su(f) FBgn0003559 FBtr0113735,FBtr0113732,FBtr0113733 1 3 5 80 XHet 77307 77325 ACTATATCGCATTCGAGCA 58 77366 77445 CGTTCATGTAATCCTTAGATCG 58 NA Nonspecific Drosophila melanogaster 50 CG17159 FBgn0039945 FBtr0113720,FBtr0113717,FBtr0113718,FBtr0113721,FBtr0113719 2 5 5 60 XHet 68536 68557 CAACTTCAGAATTGGATGAACC 59 68497 68516 AGTGTGGGTTCTATAGTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-1192a FBgn0083001 FBtr0113566 3 1 1 61 X 17038542 17038560 GCTTGTAGACCAGATCGAG 59 17038499 17038517 TCGAAGCTCAATTCTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14617 FBgn0031191 FBtr0100652,FBtr0100651,FBtr0077352 2 3 5 128 X 21887458 21887783 GATTGCTTCAACAGCTCTG 59 21887874 21887893 GTTTGAGGAGTAGTTTGGTC 58 NA Drosophila melanogaster 50 CG14476 FBgn0027588 FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058 2 5 5 95 X 21472298 21472388 CCAGTAGATGATTTCAAGATCC 58 21472224 21472242 GTGCAACATCAAGGTTGAG 59 NA Drosophila melanogaster 50 CG14476 FBgn0027588 FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058 1 5 5 94 X 21472297 21472387 CAGTAGATGATTTCAAGATCCC 58 21472224 21472242 GTGCAACATCAAGGTTGAG 59 NA Drosophila melanogaster 50 CG1718 FBgn0031170 FBtr0077233 3 1 1 80 X 21167096 21167114 AATACGAGGATTTGGCTCG 59 21166970 21167053 GGATATAGTCCTCAAAGCCC 59 NA Drosophila melanogaster 50 shakB FBgn0085387 FBtr0112569 3 1 5 126 X 20663759 20676866 GAGTAGATCATCGGTGTCTC 59 20663652 20663670 GGGATTTCCTACGTACTGC 59 NA Drosophila melanogaster 50 RhoGAP19D FBgn0031118 FBtr0077320 3 1 1 106 X 20358539 20359364 TGCAGATGCACTATACGAG 59 20358451 20358469 AAATGTGGTCTTGTGGGAG 59 NA Drosophila melanogaster 50 inx6 FBgn0027107 FBtr0077339 1 1 1 60 X 20139923 20139941 ATGCTCACCAGGTATTTCC 59 20139881 20139899 ACTTGATCGAATAGCACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 D2R FBgn0053517 FBtr0070034 3 1 5 82 X 19905588 19907143 GCACCTAAGGTAAATGGAG 57 19905524 19905544 GAAGTAGAGCATATCACATCC 57 NA Drosophila melanogaster 50 CrebB-17A FBgn0014467 FBtr0074555,FBtr0074556,FBtr0074554,FBtr0112878 2 4 7 202 X 18269409 18269883 CTACAACACCAACAACAGC 59 18270049 18270067 GACAGTAGAGCTCCTTGAG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 wupA FBgn0004028 FBtr0074520 1 1 7 83 X 18000953 18006603 GATGTTGAGATCAACGATCTC 58 18000825 18000843 TTTGGAGACCTTCTTCAGG 58 NA Drosophila melanogaster 50 Fim FBgn0024238 FBtr0074443,FBtr0074441,FBtr0074442 3 3 3 118 X 17182048 17182066 ACTCAATCTAGCCTTCGTG 59 17181556 17181966 AATTGCGGTAGGTCTTCTC 59 NA Drosophila melanogaster 50 baz FBgn0000163 FBtr0074388,FBtr0111000 1 2 2 80 X 17085682 17085701 GCAGATGCACTTAATGACTG 59 17085744 17085829 GGTAGTGTTGGAGACATCG 59 NA Drosophila melanogaster 50 Rrp45 FBgn0030789 FBtr0074355 2 1 1 267 X 16684012 16684032 GCAGTTGGATAATAACGAGAG 58 16683710 16683728 CTAGATGTATCGCTTGGCT 58 NA DesignNoJunction Drosophila melanogaster 50 if FBgn0001250 FBtr0074357,FBtr0074358 1 2 2 82 X 16649915 16649936 CCATCAACATTCAGAAGAACTG 59 16649783 16649872 ATACTTGTCCACAGTGCTG 59 NA Drosophila melanogaster 50 CG34325 FBgn0085354 FBtr0112527 2 1 1 95 X 16608994 16609101 CTTCAAGTGCAAGAAATGC 57 16608917 16608935 ATTCTTTAATCGGAGCAGG 57 NA Nonspecific, InUTR Drosophila melanogaster 50 r FBgn0003189 FBtr0089734,FBtr0089733 1 2 2 94 X 16554421 16554440 CTATGAGGCGTATCTCAAGG 59 16554496 16554580 CCATCTTGTGCTTGAAACTG 59 NA Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 2 7 7 80 X 16269992 16270010 ATCACCATGTATCGAAGCG 59 16270054 16270134 TCCATTTCACCTCGTTCTC 59 NA Drosophila melanogaster 50 CG9917 FBgn0030740 FBtr0074237 1 1 1 60 X 16216932 16216952 CCATTTGGCTGGTTATATTCG 59 16216892 16216910 ATCTGATCCAGGTCTAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 disco FBgn0000459 FBtr0100384,FBtr0074250 2 2 2 67 X 16107028 16107046 AGAAACGAGTACAGTGCTC 59 16106979 16106997 AAAGTGAATCTTAAGGGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nipsnap FBgn0030724 FBtr0074258,FBtr0074257,FBtr0074259 1 3 3 277 X 15965372 15965390 TCTTAGCTTGATGCAGGAG 59 15964887 15965071 GCAGAGATTTGTAACACCA 57 NA DesignRelaxed Drosophila melanogaster 50 mmd FBgn0041109 FBtr0074156,FBtr0074155 3 2 2 95 X 15856479 15856581 AATTTGAATGCAAGGCGAC 59 15856402 15856420 TTAGATTATCACCGCACGG 59 NA Drosophila melanogaster 50 CycD FBgn0010315 FBtr0074163,FBtr0074164,FBtr0074165 2 3 3 60 X 15801699 15801717 TCTGATGACCGATCTAACC 58 15801595 15801614 CATGTGCAGCATACAATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 2 9 9 111 X 15788791 15788877 GAGTTACCGAATATGGCGA 59 15788952 15788970 TTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 CG16952 FBgn0030701 FBtr0074115,FBtr0074114,FBtr0074116 3 3 3 80 X 15765546 15765902 CAATAGCACAGAAAGATCTGTC 59 15765943 15765961 TTTGGGAACTCCTTGAACC 59 NA InUTR Drosophila melanogaster 50 CG8974 FBgn0030693 FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186 1 5 5 210 X 15688455 15688537 GATCCACGTAACAAAGTTCC 58 15688199 15688217 GTTCATCCTCGTATTGCCT 59 NA DesignRelaxed Drosophila melanogaster 50 Actr13E FBgn0011741 FBtr0074203 1 1 1 60 X 15630814 15630834 GGGATTACATATTCAGCAAGG 58 15630774 15630793 ATGACAATATTGCGGTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9503 FBgn0030598 FBtr0073974 3 1 1 124 X 14815296 14815314 AGCTGTCCAAGATTGACTG 59 14815074 14815094 ATAGTTAAGAACAGAGCTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12539 FBgn0030586 FBtr0073987 1 1 1 60 X 14737114 14737132 ATTGCTAAAGCGAACTGTC 58 14737072 14737090 CCAATAATCATCCGAGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9413 FBgn0030574 FBtr0073943,FBtr0073944 1 2 2 90 X 14482757 14484290 GAACTATGATAGGGTCTGGA 57 14482686 14482705 GCAAGCCAGATTATAAAGCT 58 NA Drosophila melanogaster 50 CG11095 FBgn0030528 FBtr0073827 3 1 1 60 X 13706153 13706172 TATCCCTACTATACACCCGA 58 13706194 13706213 AAGGAGATCTGAAAGCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32652 FBgn0052652 FBtr0073671 3 1 1 89 X 12305612 12305686 GCTAGGATAGTTGAAATGGTG 58 12305543 12305562 TAAGCGCAACATTTGTATCC 58 NA Drosophila melanogaster 50 CG2061 FBgn0027498 FBtr0073429,FBtr0073430,FBtr0073431 2 3 3 60 X 10987593 10987614 CTATTGGCTAAACGATGTACTG 58 10987635 10987653 TATGGATACCAGGTCATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PPP4R2r FBgn0030208 FBtr0071452,FBtr0071453,FBtr0071451 2 3 3 82 X 10374023 10374042 TAAGTTTATGCGTGCTTTGG 59 10374146 10374164 CATTCTCACTTTCGGTACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG2972 FBgn0030177 FBtr0071430 1 1 1 60 X 9978470 9978491 TAAGTACAAGAATCAGAGCCTG 59 9978512 9978530 GATCGGATTTCTCGAATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 amx FBgn0000077 FBtr0071331 3 1 1 61 X 9140509 9140527 CTATTCCGTACCAACTGCA 59 9140466 9140484 GTAAAGGATCGATTGCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297 2 4 6 118 X 9005030 9005125 CGAGCATGGATTTAATCCAG 58 9005449 9005467 GAATCTGTCGGATGAGGTC 59 NA Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274 3 10 10 166 X 8768356 8768374 GAGGATGAGAACGAGAACG 59 8768131 8768227 TCTTGTTTCAGAGCCTTGAG 59 NA Drosophila melanogaster 50 CG11265 FBgn0030049 FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964 3 4 4 142 X 8459066 8459084 ATGATATCGGTCGAAGCAG 59 8459189 8459420 AATGATTCGACCCAGTATCG 59 NA Drosophila melanogaster 50 CG32711 FBgn0052711 FBtr0071248 1 1 1 142 X 8302474 8302564 AAGCAATGGCACAATACAC 59 8302287 8302305 TTAGAAGTCATCTGCACGT 58 NA InUTR Drosophila melanogaster 50 CG1575 FBgn0029999 FBtr0071151 3 1 1 63 X 8012147 8012165 CTAATGAGTCTGCTCTGGA 58 8012192 8012210 TTAGCTCCGTGGTATTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tom40 FBgn0016041 FBtr0071074,FBtr0071073 2 2 2 70 X 7632792 7632810 GTATCAGATCGATCTGCCC 59 7632945 7632963 CAAAGATTTGCCAGTTGGA 58 NA DesignNoJunction Drosophila melanogaster 50 RpL7A FBgn0014026 FBtr0070915,FBtr0070916,FBtr0070917 1 3 3 84 X 6425868 6425886 CGATGTTGATCCTCTGGAG 59 6425399 6425417 CTTACCCTTCACAATGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3774 FBgn0029849 FBtr0070875 1 1 2 103 X 6114598 6115423 CCCTTCCAATATGGCTCTG 59 6115489 6115508 CGATTTGAATGATCAGCTCC 59 NA InUTR Drosophila melanogaster 50 rux FBgn0003302 FBtr0070889 2 1 1 60 X 5930603 5930621 ACTCCCTGAAGTATGTGGA 59 5930561 5930581 CCGTAGATATGTTCATTACGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAP5A FBgn0029778 FBtr0070785,FBtr0070784 1 2 2 228 X 5511348 5511366 TATCCCAGCTTTATGGCAG 59 5510964 5510984 GAGGAGAGCATAAAGATCTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG4165 FBgn0029763 FBtr0070774,FBtr0070772,FBtr0070773,FBtr0070775 3 4 4 81 X 5317036 5317156 TTAGAACACTACCAGACACC 58 5317200 5317218 ACTCATAGCACCAGATGTC 58 NA Drosophila melanogaster 50 ctp FBgn0011760 FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704 1 4 4 184 X 4585720 4585738 AGTGAAGTTGTAAGCACAC 57 4592338 4592356 CTCCTTCTTGATGTAGGCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 rap FBgn0003200 FBtr0070687,FBtr0070686 1 2 2 136 X 4568509 4568527 TACTGAAGAACGAGCTCCT 59 4563162 4568409 ATTGTAGTCCTGCTTGGTG 59 NA Drosophila melanogaster 50 CG12184 FBgn0025387 FBtr0070696 2 1 1 117 X 4522152 4522170 CAGATGATTCGCAATGCTC 59 4521996 4522071 TAACTCGAGTATTGGCTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG2875 FBgn0029672 FBtr0070586,FBtr0070587 3 2 2 67 X 3466638 3466656 CTTTCTCATGGACTCCCTC 59 3466527 3466546 TAAAGATTCCCTGAAGAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070511,FBtr0070514 2 13 14 81 X 3228354 3228595 CGTCGCTTAAGTTCAAACG 59 3228640 3228658 TCGGAAATCTGATTTCCCG 59 NA Drosophila melanogaster 50 CG3588 FBgn0025643 FBtr0070548,FBtr0100550,FBtr0070549,FBtr0070547 2 4 4 169 X 2816306 2816324 TTGAGTCCCTTGGAAAGAC 59 2816542 2816560 TTCTTCTTGTGTTGCTGAC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG13762 FBgn0040333 FBtr0070444 1 1 1 60 X 2516370 2516388 TTCTCAACATCCAGCTCAC 59 2516328 2516346 GGCCATTCAACATATTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Unc-76 FBgn0040395 FBtr0070376,FBtr0070377 2 2 2 83 X 1985850 1985868 ACTTGACCACAGTCATTCC 59 1985913 1986003 CCTTGAGAATCTTGATCAGGA 59 NA Drosophila melanogaster 50 arm FBgn0000117 FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988 2 4 5 93 X 1787501 1787519 CAGAAGAAGCATATGAGGG 57 1786143 1787446 GTATCATATCCTTGCTGATGG 58 NA Drosophila melanogaster 50 CG32810 FBgn0025394 FBtr0070260 3 1 1 121 X 1408818 1408901 TAACCCAGATGATCTCAACG 59 1408985 1409003 ACACTCTTTGGATACCACG 59 NA DesignRelaxed Drosophila melanogaster 50 CG11412 FBgn0024362 FBtr0070208,FBtr0070209 3 2 3 228 X 1237464 1237482 GATATGCACATGAACGTGC 59 1237916 1237935 TAAGATAGTAGCGGAACAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11412 FBgn0024362 FBtr0070208,FBtr0070209 2 2 3 228 X 1237463 1237481 GGATATGCACATGAACGTG 58 1237916 1237934 AAGATAGTAGCGGAACAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3638 FBgn0026875 FBtr0070248,FBtr0070246,FBtr0070249,FBtr0070247 3 4 4 88 X 1117713 1117731 TTATTTGGCCTCCAGTGTG 59 1117575 1117661 CATAGGGACTTCTCATGCC 59 NA Drosophila melanogaster 50 fz3 FBgn0027343 FBtr0112928,FBtr0070138 3 2 2 60 X 676921 676939 GCATTTGTATACGAGTGGG 58 676961 676981 AGCATATAGAGGAGTGATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17896 FBgn0023537 FBtr0070093,FBtr0070092 3 2 2 60 X 385921 385939 AGGCAAGTACATTTACGAG 57 385879 385897 GCCCATATTAGATTGCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3777 FBgn0024989 FBtr0070066,FBtr0070068,FBtr0070067 2 3 3 128 X 241726 242117 ACAAGACTGGTAGAAATCGT 58 242208 242226 CAACCACTATACCCTCCTC 58 NA Drosophila melanogaster 50 ewg FBgn0005427 FBtr0100577,FBtr0100579,FBtr0089441,FBtr0089442 1 4 8 172 X 165636 166462 ATGTTGATTACACCACGCA 59 165420 165438 AACGGTTTGAATGGTAGCA 59 NA Drosophila melanogaster 50 CR41585 FBgn0085806 FBtr0114260 1 1 1 60 U 7429711 7429730 CGTTCTTTATTCACGCACTG 59 7429751 7429771 GCGGTATTTCTACTGTTAGTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40561 FBgn0085744 FBtr0114194 3 1 1 258 U 7865244 7865262 TAGTAGTGCAAGCTAGCTG 58 7865004 7865027 CAGCTAGCTTACACTACTATATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41010 FBgn0085552 FBtr0113965 2 1 1 110 U 6449562 6449580 TTCGATATGCTCGAACTGG 59 6449470 6449488 AAATACTCGTCAATGACGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40609 FBgn0085501 FBtr0113913 3 1 2 284 U 5681829 5681847 CAAGAGATATCGTCGGTGG 59 5681471 5681489 TGCAACATTCAATTGCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG40162 FBgn0058162 FBtr0113815 3 1 1 74 U 592685 592705 ATCCTAATCTCATTCGAGACG 59 588193 588211 CCAAATCGTTGTTAACGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG40268 FBgn0058268 FBtr0113853 1 1 1 60 U 374512 374530 CAACGCTTCCAAGAAACTC 59 374470 374488 CTGTGTCTCCAAAGTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sv FBgn0005561 FBtr0100344,FBtr0100346,FBtr0100343,FBtr0089327 1 4 7 95 4 1129117 1129138 CCGTTAGTTCCTATTAGTATGC 58 1129194 1129748 GTCAAATGCTAGAGCTGTG 58 NA Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 2 8 8 80 4 671647 672939 ACAGCACAGATTGATGGTC 59 671585 671604 GTTCAAATACGGGTGAAAGC 59 NA Drosophila melanogaster 50 Eph FBgn0025936 FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086 3 4 5 110 4 640795 640889 GCTCAACAGATATCCAGGT 58 640961 640981 TATTATAGTGTCGAGTTGCCG 59 NA Drosophila melanogaster 50 Or98P FBgn0067407 FBtr0085225 2 1 1 60 3R 23670833 23670852 AACCTATTGCTCAGGATCTC 58 23670875 23670893 ATGCCATACTCAAAGTAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Map205 FBgn0002645 FBtr0085876,FBtr0085875 2 2 2 60 3R 27893116 27893134 GCCTTTAGATCAGGAGGAG 58 27893074 27893092 CACTAACTGCTCTTGACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 krz FBgn0040206 FBtr0085877 2 1 1 60 3R 27875115 27875134 GTCTAGCACTCTCATTACCA 58 27875074 27875093 ATAGTGGACCATAATACCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1544 FBgn0039827 FBtr0085755,FBtr0113311,FBtr0085756 3 3 3 88 3R 27027463 27027481 TAACCTATTGGGACACTGG 58 27027532 27027611 ATGGATGTTAAAGTCTTCGG 57 NA Drosophila melanogaster 50 Moca-cyp FBgn0039581 FBtr0085286,FBtr0085287 3 2 2 119 3R 24168519 24168608 CGAGATACCAGAGGTATCGA 59 24168690 24168708 TCTCGATCCTGATCTTTGC 59 NA InUTR Drosophila melanogaster 50 Cpr97Eb FBgn0039481 FBtr0085135 2 1 1 60 3R 22916122 22916143 CTATGGAAAGTACGGTTATGTG 58 22916083 22916102 GGCTCCATACTCTATTTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14250 FBgn0039448 FBtr0085049 1 1 1 87 3R 22518460 22518478 TTGGACTTTAGCTCAGCAC 59 22518391 22518409 TTGTGAGAGGAGTTACTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5024 FBgn0039373 FBtr0084902 3 1 1 60 3R 21637263 21637281 GGATCTGGCTTTATACACG 57 21637304 21637323 TTTCATCGCCATATTCAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CHKov1 FBgn0045761 FBtr0113353 3 1 5 159 3R 21149169 21153867 AAACTACATCCAACGGAGAG 59 21149029 21149047 AATTAAAGTCCAGGGCACC 59 NA DesignRelaxed Drosophila melanogaster 50 CG11844 FBgn0046214 FBtr0084775,FBtr0084777,FBtr0113354 2 3 4 85 3R 20949829 20950321 ATAGAACTGGCGTCAAGTC 59 20950370 20950388 TAAGTCCTCAATGTCCTGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CycB3 FBgn0015625 FBtr0084728 3 1 1 61 3R 20695891 20695910 TGGATGCTAAGAAACAGGAG 59 20695849 20695867 CGTAGTCATCTTACTGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7006 FBgn0039233 FBtr0084704 3 1 1 79 3R 20676464 20676482 AAGATCTTGTTCGAGCACC 59 20676576 20676594 CAATATGTTCCATCTGGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slo FBgn0003429 FBtr0100632,FBtr0100636,FBtr0100637 3 3 17 93 3R 20521092 20521110 AGGACATTAAGGACGAGAC 58 20521838 20528849 CGATTGAGTACTAAGTCATCG 58 NA Drosophila melanogaster 50 CG31126 FBgn0051126 FBtr0084663 2 1 1 60 3R 20485387 20485405 TAAATTTCACTCTTCGCCG 58 20485429 20485447 GGTGTCAGTTGATTCAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31184 FBgn0051184 FBtr0084505 2 1 1 69 3R 19822377 19822395 AAGGTGTACGTAAAGATGC 57 19822488 19822506 TCAAATGCTGATCAAAGGC 58 NA DesignNoJunction Drosophila melanogaster 50 Gdh FBgn0001098 FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498 1 4 4 96 3R 19763339 19763461 AAGCTAAGATCATTGCCGA 59 19763261 19763279 TACAGATCGGGAATGACCA 59 NA Drosophila melanogaster 50 CG31145 FBgn0051145 FBtr0084480,FBtr0084479 2 2 2 85 3R 19440925 19441934 CAATACAGCATGTTGTGCA 59 19440858 19440879 CTTCATTAAGGCCTTGATATCG 58 NA Drosophila melanogaster 50 Gr94a FBgn0041225 FBtr0084346 3 1 1 60 3R 18878199 18878217 GATTCTGTCGCTCATATGC 58 18878238 18878259 ATAGTACAGACTGTAGAAACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 p53 FBgn0039044 FBtr0084359,FBtr0084360 3 2 2 96 3R 18878870 18878891 CGATATCAAGGAGGATATTCCG 59 18878662 18878743 ATTCCCGGAGTTTAATCCC 59 NA Drosophila melanogaster 50 sar1 FBgn0038947 FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208 2 5 5 60 3R 18184317 18184335 TTCACTACATTCGACTTGG 57 18185255 18185273 GGAAGTAGTCCTTCCAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6028 FBgn0038924 FBtr0084186 3 1 2 117 3R 17850658 17850676 ATAATGTCATCGCTCATGC 58 17850488 17850506 CCGAAGACATAGTCCATGG 59 NA DesignNoJunction Drosophila melanogaster 50 Eip93F FBgn0013948 FBtr0112874,FBtr0084169 1 2 2 96 3R 17821415 17821433 CCCAACCACTGTAAGACAG 59 17821491 17821577 GTGATGTTTGGTTGTTCTCAG 59 NA Drosophila melanogaster 50 Cby FBgn0067317 FBtr0084136 3 1 1 60 3R 17694053 17694072 TCTTCAACAAGAAGTTCGAG 57 17694095 17694113 CCTATATTGCAACGTCCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5180 FBgn0043457 FBtr0083903 2 1 1 153 3R 16384875 16384893 AGATCACCTCCCTAGACTC 59 16385074 16385092 AATGGCTGATAGTGATCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4936 FBgn0038768 FBtr0083831 2 1 1 128 3R 15859118 15859137 GTACAAATGCAGCTATTGCC 59 15859283 15859303 GTGTTGGTGTAAGTGAATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Hs6st FBgn0038755 FBtr0083846 3 1 1 114 3R 15763057 15763075 CTGTCCAGAATCTTCGACC 59 15756240 15762979 TTCAGATGTTCGAAACGCT 59 NA Drosophila melanogaster 50 CG6231 FBgn0038720 FBtr0083810,FBtr0083809,FBtr0083807,FBtr0083808 1 4 4 80 3R 15444855 15444873 CGACTTTAATCGCTACCAG 57 15444732 15444811 TGCGTAAAGTAATGCATCG 58 NA Drosophila melanogaster 50 Dys FBgn0024242 FBtr0110919 1 1 8 153 3R 15419676 15419694 CAAAGGAGCATGATGACAG 58 15419810 15420230 TTGAGTTCTCATTCAAGTGC 58 NA Drosophila melanogaster 50 PKD FBgn0038603 FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592 2 4 4 196 3R 14131625 14132352 AGCAGCTCACTGAATATCC 59 14131447 14131465 GTATTGTACTGGCAGTCCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG7993 FBgn0038585 FBtr0083562 3 1 1 297 3R 14049825 14049911 ATCTCTGGAGTTCTTGACC 58 14050172 14050190 GATCGAATCCACCTTCTCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG33333 FBgn0053333 FBtr0083441 3 1 1 266 3R 13243369 13243387 CTTACGGTCAAGACCAAGG 59 13243615 13243635 CATGGTACACATTTCCTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34279 FBgn0085308 FBtr0112474,FBtr0112475 1 2 2 156 3R 13228764 13228843 TTTACCCTGAGTATTCCCA 57 13228448 13228645 TTATGCGATAATCCTTCTGG 57 NA Drosophila melanogaster 50 CG14879 FBgn0038419 FBtr0083326 3 1 2 177 3R 12172999 12173110 TGAACATCTTCGACGAGTC 59 12172840 12172858 TTGACCTTCTGTACATCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6171 FBgn0026737 FBtr0112926,FBtr0083113 1 2 2 60 3R 11189173 11189192 CCACTAATAGCAATGCACAG 58 11189132 11189153 CTAATACTGCTTGAAGATACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 1 8 8 283 3R 9504401 9504476 ACACGACGTAAATCAGGAG 59 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 beat-Va FBgn0038087 FBtr0082688 1 1 1 70 3R 8669191 8669209 CTAAACTCGGTCAAATGGT 57 8669081 8669099 TAAATCGGACTCGTCAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6950 FBgn0037955 FBtr0082522,FBtr0082519,FBtr0082520 2 3 4 116 3R 7647072 7647092 CGAGGTGATCATTATTGAACC 58 7646917 7646935 GAGCTTATTGGTCCCTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6950 FBgn0037955 FBtr0082522,FBtr0082519,FBtr0082520 1 3 4 114 3R 7647072 7647092 CGAGGTGATCATTATTGAACC 58 7646919 7646937 GCTTATTGGTCCCTCTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6950 FBgn0037955 FBtr0082521,FBtr0082522,FBtr0082519,FBtr0082520 1 4 4 60 3R 7646915 7646933 GAGGGACCAATAAGCTCTG 59 7646873 7646891 TGAACAGACTCTCGAACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14718 FBgn0037939 FBtr0082426 3 1 1 60 3R 7526914 7526934 AGAGCTGAATGGAGATATAGG 58 7526956 7526974 ATTAACCTCCTCTGCAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4089 FBgn0037838 FBtr0082281 1 1 1 60 3R 6642365 6642384 CACTTACATCAACAAGTGGC 59 6642461 6642481 TTATCGGTTGTGATCATCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Syn FBgn0004575 FBtr0089476,FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471 1 5 5 80 3R 6041341 6042793 GGTGGATGAGATATCCGAG 58 6042837 6042855 TACTCTCGTCCATCTTTGG 58 NA Drosophila melanogaster 50 tws FBgn0004889 FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190 1 8 8 80 3R 5954403 5954421 CTCCAGGGATTACTTGAGC 59 5954227 5954361 TATTCATGAACCGGATAGGTC 59 NA Drosophila melanogaster 50 CG3940 FBgn0037788 FBtr0082179 2 1 1 91 3R 5938525 5943340 CTCCTTAATAGTCTGCTGCTC 59 5943393 5944014 TTGGAAATGGCTCATCCTG 59 NA Drosophila melanogaster 50 CG16904 FBgn0037763 FBtr0082154 1 1 1 60 3R 5641958 5641976 GCATGTACACCTATTTCCA 57 5641916 5641936 CTTATGACATAGATGACACCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nmdyn-D7 FBgn0028997 FBtr0082083 2 1 1 95 3R 5506303 5506321 ATAAACCAGGGCATGATGG 59 5506378 5506448 CATAAGGACTGAAGAGGAGAC 59 NA Drosophila melanogaster 50 CG8176 FBgn0037702 FBtr0082064,FBtr0082065 1 2 4 104 3R 5348603 5349931 TAGCAATCAAGTCTCTGGC 59 5349999 5350017 TCTTCCTGTATGTTCTCGG 58 NA Drosophila melanogaster 50 hyx FBgn0037657 FBtr0081968 1 1 1 133 3R 4866926 4866944 CTCATTACCATGCTCAACG 58 4867200 4867218 GACACAGTCTGATTGTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8136 FBgn0037616 FBtr0081909,FBtr0081910,FBtr0081908 1 3 3 60 3R 4547570 4547588 GTGCATTGGGCATAATGTC 59 4547611 4547630 GACGATTGATGGGAATTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mkk4 FBgn0024326 FBtr0081892 3 1 1 68 3R 4474698 4474716 TTCCAAAGAGTTTGTGGAC 57 4474583 4474601 CTATACTTGGGTCGATCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7549 FBgn0037559 FBtr0110951 3 1 3 110 3R 4083121 4083139 TTTATCGTCCGATTTCGGT 59 4083213 4084122 AGACTGAAACCTAAACCGA 58 NA Drosophila melanogaster 50 DNApol-iota FBgn0037554 FBtr0081798,FBtr0081797 1 2 2 198 3R 4060898 4060916 ATGTGGAGGAAAGGTTTCG 59 4061142 4061160 CTCACACCAGTTTCTCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 alpha-Est8 FBgn0015576 FBtr0081553 3 1 1 103 3R 3335992 3336256 GTACAGCGATCTCTTCTCG 59 3335907 3335925 ATCGGTACAGGAATGTTGG 59 NA Drosophila melanogaster 50 nxf4 FBgn0051501 FBtr0081583 3 1 1 60 3R 3172627 3172645 GACTTCAAATTCGAGTCCA 57 3172666 3172687 GATACCATCCATAGATACTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rn FBgn0003263 FBtr0081593 2 1 2 150 3R 3121509 3121527 CATGCCAAAGACATAAGCG 59 3118152 3120143 GAAAGTGACCTTTCTGCAG 58 NA Drosophila melanogaster 50 Edg84A FBgn0000552 FBtr0081688 2 1 1 60 3R 2510383 2510401 ATTCTCATCCGCAGTACTC 58 2510424 2510443 TTAACATCTCCTGTCTCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31286 FBgn0051286 FBtr0081682,FBtr0081683 3 2 2 96 3R 2467279 2467353 TATGCTTGGAAACTGTCCA 58 2467411 2467431 CCCTCTTTACTTCAAATCTGC 58 NA Drosophila melanogaster 50 CG1249 FBgn0037434 FBtr0081737 2 1 1 94 3R 2171142 2171160 AAACGTGAAGGAGATGTGG 59 2171066 2171085 ACATCTTCGATATGAACCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cas FBgn0004878 FBtr0078725 3 1 1 222 3R 1540443 1540461 CTGTCCCAAGGTGTATGTG 59 1540169 1540257 TTTGTGCTTGTCCATATCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG14673 FBgn0037352 FBtr0078738 2 1 1 60 3R 1452327 1452346 CTAACATGGAGTTCTGTCCA 59 1452286 1452304 AATTTCCTCTCGAAGCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 exba FBgn0037346 FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745 3 7 7 85 3R 1423978 1423999 GGTTCTATTATTCGTAAAGGGC 58 1423648 1423932 CAGAACCGTTGACTAACCA 59 NA Drosophila melanogaster 50 Rheb FBgn0041191 FBtr0078693,FBtr0078694 3 2 2 93 3R 1395422 1395440 GTGTACTCGATAACCAGCC 59 1395495 1395574 CCACAGGTACATATTTCTTGC 59 NA Drosophila melanogaster 50 CG31523 FBgn0051523 FBtr0078938,FBtr0078935,FBtr0078936,FBtr0078937 2 4 4 92 3R 293416 293434 TTCTACTACATGATCGCCG 58 293283 293361 CACGAATTGAACCATTTGGA 59 NA Drosophila melanogaster 50 CG14642 FBgn0037222 FBtr0089687,FBtr0089688 1 2 2 160 3R 67638 67714 TACATCCATATACGAGGCG 58 67496 67514 TAAGTAGGGCTATGTCGTC 57 NA Drosophila melanogaster 50 aux FBgn0037218 FBtr0078965,FBtr0078966 3 2 2 143 3R 52283 52301 TTCTCTGCTCTATGCACAC 59 52405 52485 CTGTTCCATTATGCTTATCAGG 58 NA Drosophila melanogaster 50 CG40053 FBgn0058053 FBtr0111154 2 1 1 106 3L 24003641 24003662 CACCATAAAGCTGTTATTGAGG 59 24003556 24003574 ATTTCCTATCGATCGACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mub FBgn0014362 FBtr0078469,FBtr0078468,FBtr0078470 3 3 4 155 3L 21914290 21914308 CGAGATTCGCCAAATATCC 58 21914425 21918297 GCAGTCTCCATTGATATTCTC 58 NA Drosophila melanogaster 50 CG6049 FBgn0037081 FBtr0078400,FBtr0078399,FBtr0078398 3 3 3 80 3L 21414145 21414214 ATCTATGATCGCCATCCTG 58 21414083 21414103 CATCATTTGAATGACGAGGTC 59 NA Drosophila melanogaster 50 CG4289 FBgn0037020 FBtr0078251 3 1 1 95 3L 20772496 20772788 CTTCTGGAAGCAATACATTGC 59 20772841 20772863 GTCTCTACCTTCTTGTCTATGTC 59 NA Drosophila melanogaster 50 gogo FBgn0052227 FBtr0074848 1 1 1 80 3L 20264893 20266095 CTAATACAGGTGGATGGTGAG 59 20264833 20264851 CTTTATGTACTGGGTGGCA 59 NA Drosophila melanogaster 50 grim FBgn0015946 FBtr0075130 1 1 1 70 3L 18296909 18296927 GATCTTCTGCTACGCTCTG 59 18296857 18296875 ATATCTGAATGACCGTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32185 FBgn0052185 FBtr0075174 1 1 1 60 3L 17488008 17488027 GAATACTGATCCTCGTGTCC 59 17488050 17488068 TATGGTTGACGATAGGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 1 8 8 118 3L 16956803 16956821 AAGACCCATTGAAGGTAGC 59 16956901 16956979 CAATAGACCCTTGTGAATCAC 58 NA Drosophila melanogaster 50 CG11905 FBgn0036678 FBtr0075304,FBtr0075301,FBtr0113173 2 3 10 209 3L 16926458 16928309 AATGCGCTTTCTTGTTCTC 59 16923956 16923974 GGTTGATAGGCTCCATAGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG32154 FBgn0052154 FBtr0075460 3 1 1 60 3L 16232078 16232097 TTGGAATCCTATGGTCTAGC 58 16232119 16232138 CTGAAGTGTCCTTCTGAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5235 FBgn0036565 FBtr0075497 2 1 1 60 3L 16082500 16082518 GAGGAATGTTGTTCACCAC 58 16082458 16082479 GGATCCAGAGTATATCTTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dcp2 FBgn0036534 FBtr0075540 2 1 4 86 3L 15815230 15815248 GGTACTGTATCCTCGAAGC 59 15815106 15815181 GACAATCTGCTTCTCATTGC 59 NA Drosophila melanogaster 50 CG7255 FBgn0036493 FBtr0110880 1 1 3 96 3L 15301926 15304066 ATGATTGTGGGACTTTCCA 58 15304126 15304144 TGTATTTGAGCTTCTGCCA 59 NA Drosophila melanogaster 50 CG6859 FBgn0036484 FBtr0075640 3 1 1 60 3L 15138845 15138863 AACTTGCTGAACATCAACC 58 15138886 15138905 CACTGATGATAGGAATGAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13467 FBgn0036455 FBtr0075696 3 1 1 60 3L 14897941 14897959 TTCTCGATAAGATCTCGCC 58 14897982 14898001 ATGGAGAACACATATCGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trl FBgn0013263 FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704 3 8 9 237 3L 14747639 14750011 TGCTAAAGAATACACCATGC 58 14747421 14747439 TGTTGTGGAATCATGTGCT 59 NA DesignRelaxed Drosophila melanogaster 50 bbg FBgn0036425 FBtr0075726 2 1 1 60 3L 14504428 14504447 GGACGAAGATAAACTACCCA 58 14504387 14504408 ATCCTTATCATTCTCCTGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fz FBgn0001085 FBtr0075743 1 1 2 93 3L 14310429 14359857 AAGTTGAAGGTGACATCCT 58 14359914 14359932 TAAATGCAGAGTGGAAGGA 58 NA Nonspecific Drosophila melanogaster 50 CG13738 FBgn0036390 FBtr0075790 1 1 1 67 3L 13966341 13966359 TTTACCAGGTGGTCTACTG 58 13966292 13966310 ATTTCTCACGGTGTTCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11006 FBgn0027534 FBtr0075927,FBtr0075929,FBtr0114506,FBtr0075928 2 4 4 85 3L 12803756 12803840 TGATGAAGATCGATGAGAAGG 59 12803887 12803905 CAATGATAGAACGCCTGTG 58 NA Drosophila melanogaster 50 CG10654 FBgn0036294 FBtr0075971 3 1 1 60 3L 12499562 12499582 AGTCTACGTAATAGAGGACGA 59 12499522 12499540 AATGGATAGCTTCTCCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5946 FBgn0036211 FBtr0076079,FBtr0076078 1 2 4 106 3L 11811263 11811281 AAGGACATTCTACTGCGTG 59 11810404 11811193 CTATACTGCCAACCTTCGT 59 NA Drosophila melanogaster 50 CG7573 FBgn0036153 FBtr0076170,FBtr0076171 2 2 2 102 3L 11305503 11305522 CTTGTTGGGTTTGATTTGTG 58 11305639 11305660 CTCGCTTAACATATGAATAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6199 FBgn0036147 FBtr0076187,FBtr0076188 3 2 2 82 3L 11195966 11196054 TTAGACTTGGAAGAGACAAACC 59 11195905 11195923 AGAAACTGGTCGAAGAAGG 59 NA Drosophila melanogaster 50 JIL-1 FBgn0020412 FBtr0076236,FBtr0076237 3 2 2 81 3L 11075164 11075183 CCGGAGAACATAATGTTCGA 59 11075042 11075121 AGCGATTATTGTAACATGCG 59 NA Drosophila melanogaster 50 nudE FBgn0036059 FBtr0113158,FBtr0113159 1 2 4 95 3L 9894108 9894450 TTCGCTTAAGAATCCCGAG 59 9894509 9894527 TTTCTTAACATGTCGGCCA 59 NA Drosophila melanogaster 50 vsg FBgn0045823 FBtr0076398,FBtr0076400,FBtr0076399,FBtr0076401 3 4 4 78 3L 9709210 9709228 ATGGATCCTCGTTCATTGG 59 9709270 9709288 TTGTAGAACTTGTAGGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5021 FBgn0035944 FBtr0076514,FBtr0076513 3 2 2 142 3L 8960603 8960685 TTGAGTCAAAGAACAGTCG 57 8960791 8960809 GATCATTACCAGCAGTAGC 57 NA Drosophila melanogaster 50 CG7546 FBgn0035793 FBtr0076791 2 1 2 138 3L 7506481 7506629 GTCTCGAAATGGATCACGA 59 7506927 7506945 ATAATTCGGGCCATTTCCA 59 NA Drosophila melanogaster 50 CG8539 FBgn0035791 FBtr0076831 2 1 1 60 3L 7490752 7490771 TCCTTTGTGTTCGAGATGTC 59 7490711 7490731 GAGGAAAGAACTTGTACTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lark FBgn0011640 FBtr0076842,FBtr0076843,FBtr0076845,FBtr0076841,FBtr0076844 2 5 5 100 3L 7334146 7334165 ATACGACACTATGTTCAGCC 59 7334466 7334484 TAAAGTCCTCGTAACCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Cpr65Ec FBgn0035737 FBtr0076909 1 1 1 62 3L 7086536 7086554 GACTCGCGAGTATAAGAGC 59 7086580 7086598 GACGTCTGGTACTGATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13711 FBgn0035572 FBtr0073347 2 1 1 60 3L 4758214 4758232 GGCCAAGTACTTTATCACC 57 4758253 4758274 GTATCCTTTCAAATTCCGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DopEcR FBgn0035538 FBtr0100186 1 1 3 179 3L 4379568 4380292 GAAACGCCAAAGAGTTAGC 59 4371891 4379425 CTAATTGTGCGCATCTGAG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 CG10863 FBgn0027552 FBtr0073171 2 1 1 83 3L 3941428 3941446 ATCTATGATGCCAAGGTGC 59 3941296 3941384 AATCTCAATCAGATATCGGAGC 59 NA Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 3 9 15 80 3L 3083795 3084813 CTCGCCACTTATATGAATCGA 59 3084852 3084873 CAAATTAAGTAGTGAGAACCCG 59 NA Drosophila melanogaster 50 Jafrac2 FBgn0040308 FBtr0072982,FBtr0072983 3 2 2 93 3L 3043306 3043327 CGTGGTTAATAAGGAGATTGTG 59 3043380 3043450 TACAAAGGTGAAGTCCAGTG 59 NA Drosophila melanogaster 50 CG1240 FBgn0035370 FBtr0072969 1 1 1 101 3L 2767839 2767857 AAGTCGTGAAGAAGGTGTG 59 2767922 2767940 TCATCACCTTCATCAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1244 FBgn0035357 FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933 1 6 6 88 3L 2640260 2640344 CACAAAGTGAAGATTCACCC 59 2640395 2640413 CCCTGATCCGTAAAGAACC 59 NA Drosophila melanogaster 50 CG33232 FBgn0035347 FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920 2 4 4 87 3L 2495884 2495902 ACATTAGCTCCGAGTACAC 58 2495951 2496030 GCATTATGACCATATGACTCC 58 NA Drosophila melanogaster 50 CG7974 FBgn0035254 FBtr0072763 2 1 1 139 3L 1665905 1665923 AAGATCCGCAACATAGAGG 59 1666025 1666099 TCGATGTTGAATCGATTGTG 58 NA Drosophila melanogaster 50 CG2199 FBgn0035213 FBtr0072721 2 1 2 173 3L 1342375 1342393 GAATGCGCAATATACTGCT 58 1341852 1341936 ATGATGGGATGCTTCTGTG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 Glut1 FBgn0025593 FBtr0112911,FBtr0072617,FBtr0072616,FBtr0112909 1 4 6 80 3L 982229 982247 CTGCATCTCTATGGTCTGG 59 982289 983866 GTCGATCATTTCCTTGATCAG 58 NA Drosophila melanogaster 50 CkIIalpha-i3 FBgn0025676 FBtr0072604,FBtr0072603 1 2 2 80 3L 709131 709151 GGTGAATTTACCGATGAAGAG 58 709015 709091 TTCAACAGTCTCCTTGATCTC 59 NA Drosophila melanogaster 50 DIP2 FBgn0024806 FBtr0072520 2 1 1 82 3L 254628 254706 AGTGTTATGGGTGTCACTG 59 254564 254582 CCTTCGGTATAATGGCAGG 59 NA Drosophila melanogaster 50 E(bx) FBgn0000541 FBtr0072522,FBtr0072523,FBtr0072521 3 3 3 88 3L 245466 245936 GAAGGAAAGGGTACGAGTC 59 245396 245417 CAGCATATCATCCTCATTATCG 58 NA Drosophila melanogaster 50 Zfrp8 FBgn0021875 FBtr0072253 3 1 1 107 2R 20021866 20021884 AATTTCACAGTCCTCAGGT 58 20022009 20022027 TTTCTTTAGGCAGGGAACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13569 FBgn0034979 FBtr0072284 2 1 2 126 2R 20013242 20013261 TCCTATGTCTACAAGACTGG 57 20013078 20013153 AACTACGCTCTTACTCCAG 58 NA InUTR Drosophila melanogaster 50 CG3907 FBgn0034958 FBtr0072195,FBtr0072196 2 2 2 97 2R 19908023 19908097 GAGAAAGAGATAACGCTGG 57 19907944 19907963 TTAATATTGCCCATGCTCTG 58 NA Drosophila melanogaster 50 CG4797 FBgn0034909 FBtr0072240,FBtr0072239 3 2 2 65 2R 19702155 19702173 ATGGATAACAACTCCACGG 59 19702046 19702126 ATGGACACTTGCTATCCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG11299 FBgn0034897 FBtr0113114,FBtr0113113,FBtr0072087 2 3 3 112 2R 19619397 19619415 ATTTACCAGGACTTTGCCC 59 19619491 19619574 ACATCGTTGTACAATCCGT 59 NA Drosophila melanogaster 50 CG4091 FBgn0034894 FBtr0072096,FBtr0072097 3 2 3 114 2R 19587892 19587911 GATTGTGATCAAGATCGGTG 58 19587740 19587758 TGATATGATGGACAGCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Pde8 FBgn0034886 FBtr0072074,FBtr0072077,FBtr0072075,FBtr0072076 3 4 5 103 2R 19562499 19562638 CGTTAATAGATGCGTAGCG 58 19562705 19562723 GAGTGGACATGACATTGTG 58 NA Drosophila melanogaster 50 CG4019 FBgn0034885 FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103 3 4 4 214 2R 19495764 19495783 ATCGAGTTCGTAATCACCTC 59 19495489 19495507 TAGATCCAGTTGCTCTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG3906 FBgn0034871 FBtr0072121 3 1 1 68 2R 19399612 19399630 GAATCAGAGGAATGGTGTC 57 19399562 19399580 GTGATCGGTTCTATTCGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF2B-delta FBgn0034858 FBtr0072014,FBtr0072015,FBtr0072013 3 3 3 88 2R 19276380 19276398 TGAGCTACGACATTACTCC 58 19276450 19276468 GAGTATGACGGGAACACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9849 FBgn0034803 FBtr0071951 2 1 1 160 2R 18825595 18825614 CGCTAGTGATTACAGATCCC 59 18826066 18826085 GTACTCAGTGATGATTGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Oatp58Da FBgn0050277 FBtr0071779 3 1 1 86 2R 18107960 18107978 ATCAGTACCATGCTAACGG 59 18107839 18107910 GGTAAGCAACCCTATACCC 59 NA Drosophila melanogaster 50 CG6393 FBgn0034685 FBtr0071752,FBtr0071751,FBtr0071753,FBtr0071750 3 4 4 117 2R 17956299 17956317 GTACATCCTTCCCTTCGAG 59 17956398 17956416 GTTAAACATCACGATCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9284 FBgn0046297 FBtr0071717,FBtr0071718 2 2 2 84 2R 17691237 17691255 TAAGTCCTTGTCATCTGGC 58 17691303 17691321 ATAGCCTTATGTCCTCTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18735 FBgn0042098 FBtr0071744 2 1 1 60 2R 17686279 17686298 TAAATGGCTTCTACCATCGT 58 17686238 17686258 CTATCCTGACGATTATGCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34204 FBgn0085233 FBtr0112397 2 1 1 61 2R 17684054 17684072 GCTGTACGTCTAGTAGAGG 58 17684095 17684115 CCAATGCATGTAATTAGACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089710,FBtr0089703 3 2 9 181 2R 17399388 17399406 ATATCACAGGTTCGCTCTC 58 17399675 17399908 GAAGTACTTGACGTAGCCC 59 NA Drosophila melanogaster 50 Fkbp13 FBgn0010470 FBtr0071702,FBtr0071703 2 2 2 70 2R 17375559 17375578 CAATGTGTTCAAGGAGATCG 58 17375335 17375526 TTAGATACTCGCTGACCTC 57 NA DesignRelaxed Drosophila melanogaster 50 dpr FBgn0040726 FBtr0086238 2 1 1 81 2R 16621942 16633294 CTTCAACGTAGTGGAACTC 57 16633338 16633357 TGTTAGGTTTATGTCACTGC 57 NA Drosophila melanogaster 50 exu FBgn0000615 FBtr0086243,FBtr0086242,FBtr0086244 1 3 3 133 2R 16557493 16557511 TATGCTGAAGTCGATGCAG 59 16557295 16557313 AGATAAGCACAATCCCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8929 FBgn0034504 FBtr0086284 2 1 3 95 2R 16215632 16215844 CATAACAGATCCCTCATTACC 57 16215901 16215919 TTGTCCCAATAATCGTTGG 57 NA Drosophila melanogaster 50 hpo FBgn0034453 FBtr0086500 3 1 1 60 2R 15383189 15383207 GTTTATGGAGGATCCAGGT 58 15383147 15383166 TGAGCTCTGTTGGTATTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0086456,FBtr0086451,FBtr0100392,FBtr0086457,FBtr0086454 1 14 15 80 2R 15359174 15359192 GTTTGAGGAGGACGAACTC 59 15359236 15360336 GCGACTAGAGCTTCTATCC 59 NA Drosophila melanogaster 50 Topors FBgn0034410 FBtr0086570 1 1 1 104 2R 14861660 14861681 CGTTATGTGTACGATAGAAAGC 59 14861746 14861831 CTGAGCAGGATTGTTTCTG 58 NA Drosophila melanogaster 50 CG5323 FBgn0034362 FBtr0086706 2 1 1 108 2R 14502923 14502942 CTACGTTCAACACGAATTGG 59 14503110 14503128 CTGATCCTCATTGGGACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5726 FBgn0034313 FBtr0086772 3 1 1 142 2R 14065181 14065199 ATAACTCTGCTTCACTCGG 59 14064542 14064560 CATGGATGGATACTGGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Dgp-1 FBgn0027836 FBtr0086774,FBtr0086773 1 2 2 187 2R 14058156 14058237 CTTTATGGAAATAAGGGTTGCC 59 14057990 14058008 CATCAAAGCCGAGAATGTC 58 NA Drosophila melanogaster 50 rdgBbeta FBgn0027872 FBtr0086888 1 1 1 80 2R 13585371 13585392 CCGAGTCTTCTATGTGATAGAG 59 13584361 13584436 TTGGGTATAAAGGAACACGT 58 NA Drosophila melanogaster 50 CG4847 FBgn0034229 FBtr0086937,FBtr0086934,FBtr0086933 2 3 5 198 2R 13400213 13400291 ACTTCTTGAGCCAATCTGG 59 13400453 13400471 TTCAGACCGGTCAATTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG4827 FBgn0034225 FBtr0086926 2 1 1 98 2R 13367686 13367704 GACACCTATACCGGAACTG 59 13367766 13367848 GTTGCCCAGAGAAATAGCA 59 NA Drosophila melanogaster 50 CG18467 FBgn0034218 FBtr0086918 1 1 1 102 2R 13329030 13329048 ATAGACCATCCACTTCGTG 58 13329113 13329187 TGATATCCCTCTGTAACCAG 57 NA Drosophila melanogaster 50 Ark FBgn0024252 FBtr0086968,FBtr0086967 1 2 2 91 2R 12909216 12909234 GGATGTACATCGAGCAGAG 59 12909289 12909428 TAGCTTCAGATACGGTTGC 59 NA Drosophila melanogaster 50 CG9001 FBgn0034175 FBtr0087060 2 1 1 60 2R 12887577 12887596 ACATTTCTGGGATGATCCAC 59 12887536 12887554 GTCCAGAACCAAGAAAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mlf FBgn0034051 FBtr0087292 3 1 4 93 2R 11826016 11826034 GACTGTGTAATCCAGGAGC 59 11824075 11825959 GTGGATGTATGCTGTTCTG 58 NA DesignRelaxed Drosophila melanogaster 50 Hr51 FBgn0034012 FBtr0114456 2 1 1 141 2R 11225706 11225912 GACAATGATGACGACTCCA 59 11226016 11226035 TTGTCTCGTAAACTGTTTCG 58 NA Drosophila melanogaster 50 igl FBgn0013467 FBtr0087361,FBtr0087362 1 2 2 83 2R 11068182 11068200 GAGCTAGAGGCTGAATTCG 59 11076292 11076310 CAAATGACCACGGAAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 tra2 FBgn0003742 FBtr0089617,FBtr0089620,FBtr0089615,FBtr0089619,FBtr0089616,FBtr0089621 3 6 7 143 2R 10490376 10490678 GATTGACGCACAAACACAG 59 10490251 10490272 CGTTGGGTTATAGAGAAATCGA 59 NA Drosophila melanogaster 50 Asx FBgn0000142 FBtr0100154,FBtr0087493 1 2 2 80 2R 10395746 10395764 CATATCCAGGATGTCGTCC 59 10395808 10395899 CTGGCCGATATCATTTCCA 59 NA Drosophila melanogaster 50 cg FBgn0000289 FBtr0087527 1 1 7 131 2R 10064860 10064878 ATCTTACGCAAGAGGAGTG 59 10064973 10065374 GTATGTCACTTGGTGTCCC 59 NA Drosophila melanogaster 50 shot FBgn0013733 FBtr0087619,FBtr0087617,FBtr0087616,FBtr0087621 3 4 6 81 2R 9787943 9788949 AACTAGATAAACTGCTCGGA 58 9787881 9787899 CGTATAAGTCGTCCTCCAG 58 NA Drosophila melanogaster 50 CG13335 FBgn0033857 FBtr0087680,FBtr0087679 1 2 2 60 2R 9459378 9459396 GGCTGATAATCGCATTAGG 58 9459336 9459355 GGTAATAGAGTACACCTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8830 FBgn0033738 FBtr0087950 1 1 2 126 2R 8322072 8322090 AACATCGAGAAGCTGTTCC 59 8321899 8321982 TCCTTGGCAAGATCTTGTG 59 NA Drosophila melanogaster 50 CG30049 FBgn0050049 FBtr0087906 1 1 1 80 2R 8246241 8246315 CATCGAGTTCGTGAAATCC 58 8246358 8246377 TCCTGGTTTACGTAATGTCC 59 NA Drosophila melanogaster 50 sha FBgn0003382 FBtr0088120 3 1 1 136 2R 7219336 7219419 AAATATGCCCACAATGTCC 58 7219518 7219537 ACATAGATGAGACCCAAGAG 58 NA Drosophila melanogaster 50 Cpr47Eg FBgn0086519 FBtr0088183 2 1 1 89 2R 7165684 7165702 CAGAAGGGTGACCTTAACG 59 7165613 7165631 ATATTGGATGGACACTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13231 FBgn0033580 FBtr0088203 3 1 1 267 2R 7033873 7034025 ATGAAATTCACTCTGCTGCT 59 7034255 7034273 GATAGGACACCGAAGACAC 59 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7722 FBgn0033574 FBtr0088211 2 1 1 86 2R 6828030 6828048 GTTACTGAATTTGGGTGCG 59 6827894 6827912 CTTGAAGAACTTGCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18004 FBgn0033566 FBtr0089727 2 1 3 81 2R 6773587 6773605 CTATTGAGTCCGGAATGCA 59 6773647 6773668 CAACTTATTACCACTTAGAGGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 3 9 9 68 2R 5738998 5739016 CTTTGAGTTGAATGGCCAG 59 5738880 5738966 ACATGGATCTCCTTAACGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 3 9 9 68 2R 5738998 5739016 CTTTGAGTTGAATGGCCAG 59 5738880 5738966 ACATGGATCTCCTTAACGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG1623 FBgn0033448 FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487 2 4 4 70 2R 5716116 5716134 TGAACTACGAACCCAAGAC 59 5716064 5716082 ATCCGGATACTTGTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1623 FBgn0033448 FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487 1 4 4 69 2R 5716115 5716133 GAACTACGAACCCAAGACC 59 5716064 5716082 ATCCGGATACTTGTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Not1 FBgn0085436 FBtr0112673 1 1 3 109 2R 5457800 5457818 AAACTTTAACTCGAGCAGC 58 5457646 5457727 CATCTGTATCGCATGAGTG 58 NA Drosophila melanogaster 50 Ggamma1 FBgn0004921 FBtr0088645,FBtr0088647,FBtr0088648,FBtr0088649,FBtr0088646 3 5 5 101 2R 4789860 4789879 TAATGTCATCATCCCTGCAG 59 4789943 4789961 TCATCTTAGCGCATGACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12780 FBgn0033301 FBtr0088736 1 1 1 60 2R 4439515 4439535 GAGACGTACTTTACTACTGGA 58 4439475 4439493 TTCATCCGGTGATAGTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30364 FBgn0050364 FBtr0088772 2 1 1 60 2R 4249320 4249338 TGATCCAAGCAAGAAGACC 59 4249278 4249299 ACTACCATCATCCTTGTATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30376 FBgn0050376 FBtr0088800 1 1 1 71 2R 4151188 4151206 TCATCTCGCCATACAACTC 59 4151135 4151153 CAAAGATCATGTTGTGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30378 FBgn0050378 FBtr0088854 3 1 1 87 2R 3838352 3838370 GAAGATGTCCGAAGAGGAC 59 3838418 3838439 GGTAACAAATTCGTTGAAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111063,FBtr0111086 1 2 60 80 2R 3247508 3249236 ATTGGTCATCACAGAACCG 59 3247446 3247464 CGAGTGAGAGTTATGTGCT 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111099 1 1 60 80 2R 3237335 3237355 AGAGATATCCACTAGTTTCGC 59 3236463 3237295 TCGATGAACTTGTACCATCTG 59 NA Drosophila melanogaster 50 Tsp42Ec FBgn0033124 FBtr0086179 2 1 1 220 2R 2895240 2895258 ATCCTACTGATCGTGTTGG 58 2895505 2895523 AGTTGCAGGATAAAGAGCA 58 NA DesignNoJunction Drosophila melanogaster 50 jing FBgn0086655 FBtr0114364,FBtr0114363,FBtr0086104,FBtr0114365 1 4 5 184 2R 2506076 2506094 GTTTGACTTCTTCGACACG 59 2506242 2506321 ACTCGTCGGAAATGATCTC 59 NA Drosophila melanogaster 50 scarface FBgn0033033 FBtr0086061,FBtr0086060 2 2 2 134 2R 1566836 1566854 TTATCCGACTCGAAAGACG 59 1565503 1566741 CCTCTTCATGTATAGATAACGC 58 NA Drosophila melanogaster 50 Stlk FBgn0046692 FBtr0111111,FBtr0111112 3 2 2 75 2R 434374 434392 CTATGGATCAGCCAATGGA 58 434431 434449 TTTCTATGTTGAAGCCGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5929 FBgn0032982 FBtr0085963 2 1 1 80 2L 22189794 22189812 CAGTCCGCTTAATCTACGA 58 22189547 22189750 TTATTTAAAGCGGCTGCAG 58 NA Drosophila melanogaster 50 CG31601 FBgn0051601 FBtr0085947 3 1 1 60 2L 22042567 22042587 GAATTATCCGAAGATGACACC 58 22042527 22042547 CTGATGTCTTGTAATCACACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2528 FBgn0032969 FBtr0085948 2 1 1 60 2L 21992253 21992272 GCAAGGGATTCTTCTATGGT 59 21992212 21992233 GTTTCTGATCCGTCAAATATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 szar FBgn0032885 FBtr0089947,FBtr0089945,FBtr0089946 3 3 3 131 2L 20790495 20790513 AACATTACTGCCGAATCTG 57 20790327 20790400 CTTCGAGATTCTTGTTCCG 58 NA Drosophila melanogaster 50 spir FBgn0003475 FBtr0081353,FBtr0081352 1 2 4 147 2L 20334710 20334730 GAACTAGAGCACATAATCGAG 58 20336395 20336472 CACCTGCTTCATTGTTCAG 59 NA Drosophila melanogaster 50 Lim3 FBgn0002023 FBtr0081169,FBtr0081170 1 2 2 95 2L 19081685 19081829 ACTTCTTCAAACGTTACGGT 59 19081609 19081627 GATGGTAGACGTTGTCCTG 59 NA Drosophila melanogaster 50 tos FBgn0015553 FBtr0081131 1 1 1 60 2L 18679789 18679807 GGGCACTCCTAAATCTAGG 58 18679747 18679765 CTTGGTTTGATTCTGGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10283 FBgn0032681 FBtr0081085,FBtr0081086 2 2 2 95 2L 18483895 18483915 CGATCAGGACATGTTAATGAG 58 18476903 18476986 GAAGTCATTAATCTCTTGGGAC 58 NA Drosophila melanogaster 50 Socs36E FBgn0041184 FBtr0081041,FBtr0081040 3 2 2 281 2L 18141991 18142009 AAGTACGTTACAACTGCAC 57 18141235 18141747 TTATTGCTTCTGGAAACTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CadN FBgn0015609 FBtr0100316,FBtr0100313,FBtr0081020,FBtr0081016,FBtr0081013,FBtr0081015 1 6 12 101 2L 17651479 17655676 CATACTGATACTCGTCTTGGT 59 17651398 17651416 TTGATGATATTCTCGCGCA 59 NA Drosophila melanogaster 50 fws FBgn0024689 FBtr0080999 3 1 2 83 2L 17480302 17480320 AAACCAAGTGGTTAATGCC 58 17480184 17480202 ATAAAGGTGGCCAATAGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG33928 FBgn0053928 FBtr0091932 1 1 1 69 2L 17436341 17436362 GTTCGGCTTTATAAGATACCAG 58 17436237 17436255 GACCATTTGATCGCTTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0080978,FBtr0080977 3 2 6 144 2L 17394476 17398601 CAATTCGGCTTATACAGATCTC 58 17398705 17398861 ATAATCATAAGATGCGCGAC 58 NA Drosophila melanogaster 50 CG31806 FBgn0051806 FBtr0080952 1 1 1 81 2L 16985306 16985324 TTAAACGAAGTCATGCCAG 58 16985369 16985387 CTTCCTCAACCAGGATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cni FBgn0000339 FBtr0080849,FBtr0080848 3 2 2 101 2L 16309925 16310012 ACTACATATACGGCATGGT 57 16309842 16309860 CAACTAATACACGACGCTG 58 NA InUTR Drosophila melanogaster 50 beat-Ib FBgn0028645 FBtr0080808 1 1 1 124 2L 15906996 15908081 GAAATCGATGTCGAGACTG 58 15906890 15906908 ATGGAAGTATCGAAGGTGG 58 NA Drosophila melanogaster 50 CG18478 FBgn0028517 FBtr0080757 1 1 1 60 2L 15670546 15670564 GGTGGCTCTTTAATTACCC 57 15670585 15670606 CTTTATTGAATATCCGATGGGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 gft FBgn0001980 FBtr0080749,FBtr0080748,FBtr0080747 1 3 3 112 2L 15266877 15266895 CTCAGCGTTTGTTAGTACG 58 15266722 15266801 TTGTATCTTCACCCTGTGG 58 NA Drosophila melanogaster 50 CG32972 FBgn0028905 FBtr0080600 2 1 2 86 2L 14164081 14164100 CGTTTCTACCAGGTTAAGGA 59 14163422 14164034 GCTATCGTTCTTAATCTTGCC 59 NA Drosophila melanogaster 50 beta Cop FBgn0025724 FBtr0080469 1 1 1 80 2L 13380050 13380068 CAGCAATGTCTATGGACGT 59 13380109 13380192 TAGTCTTTAGATTGACCTGCTG 59 NA Drosophila melanogaster 50 abo FBgn0000018 FBtr0080168 3 1 1 60 2L 10974628 10974647 CGTATGTGTTCTTTCTGGTG 58 10974587 10974607 GGCAGGATAAGTCTATCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17139 FBgn0032307 FBtr0100836 3 1 1 106 2L 10844747 10844822 GAAGTCGGACTGAAATTTGAG 59 10844661 10844679 ACGTTTCCATACAGGTTGG 59 NA Nonspecific Drosophila melanogaster 50 CG17140 FBgn0032306 FBtr0100837 3 1 2 113 2L 10843819 10843838 TCACCAACAATGATCTTCTC 57 10843657 10843743 TTTGAAAGCTCACTTCGTC 58 NA Nonspecific Drosophila melanogaster 50 CG6144 FBgn0032259 FBtr0100565,FBtr0080034 2 2 2 72 2L 10489298 10489316 TTGGTCAACGAGTATCTGC 59 10489352 10489370 AGATGATGGGATGGAACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SamDC FBgn0019932 FBtr0079994,FBtr0079995 2 2 2 75 2L 10340229 10340319 TTGTGTTAAGTGAGAGCAG 57 10340358 10340376 AATGGAGTAGTCGTTCCAC 58 NA DesignRelaxed Drosophila melanogaster 50 Trp1 FBgn0011584 FBtr0079932,FBtr0079931 1 2 2 80 2L 10011481 10011499 TTGCACTTCTGGATCTTCC 59 10011540 10011615 ATAGTTGCTCTCATATAGTGGC 59 NA Drosophila melanogaster 50 CG5850 FBgn0032172 FBtr0110943,FBtr0079890 2 2 2 100 2L 9962390 9962408 AGTGCTACTCAACGTACTG 59 9962050 9962327 TGAGGAAATTCTGAAGCAGG 59 NA Drosophila melanogaster 50 und FBgn0025117 FBtr0079866 2 1 1 150 2L 9764622 9764641 TAAATGGACACTCCATCAGC 59 9764875 9764893 ATATCGTCATGGACCAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Trx-2 FBgn0040070 FBtr0079839,FBtr0079840 1 2 2 98 2L 9615398 9615416 AAACTGGTTGAGCTTTCCA 59 9615559 9615579 GGAGATGTTGTATTCCATTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Fbp2 FBgn0000640 FBtr0079808 3 1 1 61 2L 9427136 9427154 AAGATGTCGATCGAACAGG 59 9427179 9427197 ATCACATCAATGTGTCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13101 FBgn0032084 FBtr0079783,FBtr0079784 3 2 2 85 2L 8978779 8978870 CCAGAATATGCGGATAAACTG 58 8978714 8978732 ACCAGAGATATGATGTGCA 58 NA Drosophila melanogaster 50 Cka FBgn0044323 FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538 1 4 4 98 2L 8036254 8036272 ACATCAATGGAAACGAGAG 57 8036391 8036411 CCACGATTATTTCATCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Snoo FBgn0085450 FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718,FBtr0112720 1 5 5 60 2L 7975303 7975321 GCACGACTATCTTCATGTG 58 7975261 7975281 GAGGATGATCTGGTATTTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7203 FBgn0031942 FBtr0079498 1 1 1 64 2L 7752411 7752430 TCACCTGAAATGACTTCTGG 59 7752366 7752384 GTAAAGATGCGAGCAAGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG3430 FBgn0031875 FBtr0079350 1 1 1 91 2L 6958533 6958554 GACTACCAAGCAAATATTCCAG 59 6958671 6958690 TTAGAATCGGCATTAATGGG 57 NA DesignNoJunction Drosophila melanogaster 50 Hrb27C FBgn0004838 FBtr0079347,FBtr0079348,FBtr0079346 1 3 3 169 2L 6924245 6924263 ACCTTCTTTAACCGCTACG 59 6924396 6924698 TTCTTGATTTCGACCTGCT 59 NA Drosophila melanogaster 50 CG11322 FBgn0031856 FBtr0079387 1 1 1 60 2L 6758889 6758910 CATTGCATTCTCCTTTGATCAG 59 6758850 6758869 GATAAGATCAATGGGCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr FBgn0015623 FBtr0079250 3 1 2 99 2L 6342340 6342735 ATTCCATACAACCCACCAC 59 6342798 6342816 CCATAGAAGACGACCAGAC 59 NA Drosophila melanogaster 50 CG31639 FBgn0051639 FBtr0079208,FBtr0079207 2 2 2 112 2L 6154021 6154656 AATTTAATACCAGCTCGGAC 57 6153928 6153946 GATTTCCATCTGCCTTTCC 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 stai FBgn0051641 FBtr0079196,FBtr0079197 2 2 3 179 2L 6122167 6122185 AGTGACATGAAGGAGAAGC 59 6122398 6122706 GATTGTGTTATGCTCCTTTAGG 59 NA Drosophila melanogaster 50 chic FBgn0000308 FBtr0079233,FBtr0079235,FBtr0079236,FBtr0079234 3 4 4 117 2L 5976614 5976632 CACTGCATGAAGACAACAC 59 5973579 5973597 AGTACCCGCAAGTAATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Gpdh FBgn0001128 FBtr0079147,FBtr0079148,FBtr0079146 2 3 3 106 2L 5947158 5947244 GGTCTGGAGGACAAATTCC 59 5947314 5947332 ATATGCTCAGGGTGATTGC 59 NA Drosophila melanogaster 50 CG11034 FBgn0031741 FBtr0079140 1 1 1 103 2L 5805647 5805665 AATGGCACCTGGATAACAG 59 5806411 5806714 CCCACATAGTTGTTAAGTTCG 58 NA Drosophila melanogaster 50 CG14005 FBgn0031739 FBtr0079160 1 1 1 60 2L 5800929 5800950 CATAACTTTCTGGCGTATATGG 59 5800890 5800909 TCGTTTGCTTTATTAACGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TpnC25D FBgn0031692 FBtr0079063 1 1 1 119 2L 5218754 5218773 CAACGCTGAAGGAAATTCTC 59 5218852 5218935 CCATGAATTCATCAAAGTCCAC 59 NA Drosophila melanogaster 50 qtc FBgn0028572 FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260 2 5 7 99 2L 5069212 5070107 CGCGTAAGACCATTTATCG 58 5070169 5070188 TAGAAGATAGCGCTCTTGAG 58 NA Drosophila melanogaster 50 CG14036 FBgn0031677 FBtr0079029 3 1 1 62 2L 5054763 5054783 AGGAGTGTGACTACTATCTCC 59 5054721 5054739 GACTACGAAGCGCTATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31660 FBgn0051660 FBtr0077388,FBtr0100301 2 2 2 117 2L 4871881 4871960 ACTTTATGCATCTGTTGCC 58 4872041 4872059 CAACTTCAGTATGATGGCG 58 NA Drosophila melanogaster 50 Psf2 FBgn0031599 FBtr0077461 1 1 1 60 2L 4386505 4386523 CAAAGCTAGACAACCTCAC 58 4386463 4386481 GAATAGGGCAGAATGGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tutl FBgn0010473 FBtr0089269,FBtr0089270,FBtr0089268,FBtr0089271 2 4 4 174 2L 4295611 4299075 CAATATTCCAGAAGACGCC 58 4303359 4303377 CGGATAGCTCTCATACCAG 58 NA Drosophila melanogaster 50 CG2955 FBgn0031585 FBtr0077468 1 1 1 60 2L 4149599 4149617 GCGTTGAGAAGCAAATACC 59 4149640 4149659 TCCAAACTCTCGCTATTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cog3 FBgn0031536 FBtr0077573 1 1 1 112 2L 3455694 3455765 ACACCTGACGGTTTATCTG 59 3455600 3455619 GTAGAATGGAGCAGATCTCC 59 NA Drosophila melanogaster 50 CG17224 FBgn0031489 FBtr0077672,FBtr0077671 2 2 2 112 2L 3017310 3017391 ATGAGATCGCTATTCTCGG 58 3017216 3017234 TATGGTCTGAAATCCGTCG 59 NA Drosophila melanogaster 50 oaf FBgn0011818 FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780 2 4 4 104 2L 2495396 2495415 GTATTACCTCCAACATTGGC 58 2495482 2495582 GGATTTGAACCTCATTGCG 59 NA Drosophila melanogaster 50 CG31924 FBgn0051924 FBtr0077945,FBtr0077946 1 2 2 60 2L 1354545 1354563 TCAAAGCGTTCAACATTCC 58 1354503 1354521 ATCCTAAACGAATCCCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 S FBgn0003310 FBtr0077993,FBtr0077994 3 2 2 114 2L 1052484 1052574 CCCAAAGAGATTACCATACAC 58 1052390 1052408 CCAGCATGATTGTGTAGAG 57 NA Drosophila melanogaster 50 ATbp FBgn0039946 FBtr0113737 1 1 1 61 XHet 85057 85075 AAGCACATACAGGATGAGC 59 85100 85178 GATGTACGACTGTGTTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32661 FBgn0030356 FBtr0073593 3 1 1 295 X 11812517 11812634 GCGACGGAAATCTATTTGTG 59 11812177 11812195 GTGTCAGTTGACCCTTACC 59 NA DesignNoJunction Drosophila melanogaster 50 tgy FBgn0030984 FBtr0100167,FBtr0074702 1 2 2 66 X 19019676 19020055 ACTACAATCCGAGATCGTG 58 19019628 19019646 CTGTGCACATAGTGAAAGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 scu FBgn0021765 FBtr0074511 3 1 1 71 X 17986194 17986212 GGATAAGTTCGGTCGTCTG 59 17986247 17986265 AAGTTGAACGTCTTTACCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9512 FBgn0030593 FBtr0073979 3 1 1 140 X 14798009 14798027 ATTGGTTCACCTCAGATCC 58 14796867 14796885 GATCTGGAAGATCATCGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12717 FBgn0030420 FBtr0073704 2 1 1 60 X 12657049 12657068 CATCAGTGATAACATTGCCG 59 12657008 12657028 ATGCACCTTCCTATAGAACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0110967,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 1 9 9 103 X 10691465 10691553 CTACAGTGTACAGTCTGCC 59 10691380 10691398 GTTGCAATTGTTCTTTGGC 58 NA Drosophila melanogaster 50 CG12643 FBgn0040942 FBtr0071481 3 1 1 127 X 10159126 10159144 ATAAACCACAACCAGTGCA 59 10159017 10159035 ATGGATTCGGCTTACTGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG32720 FBgn0052720 FBtr0071082 2 1 1 110 X 7428105 7429632 CAAATCGCTGGTTTGTCTG 59 7427254 7427272 AACAGAAGGAACCAGAAGC 59 NA DesignRelaxed Drosophila melanogaster 50 sqh FBgn0003514 FBtr0070877 2 1 1 100 X 6117686 6117704 TTCGACGAGGAGAATATGG 58 6117531 6117622 TACATCTCGTCCACATCCT 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12680 FBgn0029740 FBtr0070726 1 1 1 60 X 4891582 4891640 CAGGGATTAGCTGTATCCTG 59 4891663 4891681 TACTGTTCGCATTCTTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32801 FBgn0052801 FBtr0070355 1 1 1 69 X 1796692 1796710 CCATAGATCTAACCGGCAC 59 1796482 1796659 TGTTAGCGGATGAACTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14816 FBgn0023517 FBtr0070366 1 1 1 167 X 1767145 1767163 TAGTAGCCTCCACAATGGT 59 1766930 1767014 GAAGGAACTGAGATGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14786 FBgn0027794 FBtr0070230 1 1 1 81 X 1352353 1352371 TTCGACCTACACATCAAGC 59 1352229 1352308 GAAAGGCTGGATACATGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14632 FBgn0029538 FBtr0070192 3 1 2 143 X 787516 787534 TCAGGTGAACAACTATGGC 59 786652 787256 CACGAGAATAGCGTTTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 Roc1a FBgn0025638 FBtr0070122 1 1 1 94 X 541544 541646 TTTGAGGTGAAGAAGTGGA 58 541769 541787 CACAAGTCCATGATGTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG41041 FBgn0069966 FBtr0114295 1 1 1 104 U 403738 403756 AGAAGGCGATTAGAGACAG 58 403147 403670 TAGATCTCCAAAGGGAACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2241 FBgn0039788 FBtr0085680 1 1 1 76 3R 26409039 26409112 AACTCAACCTCAAGGTTCG 59 26408981 26408999 AACCTCCGCAATATAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mlc2 FBgn0002773 FBtr0089747 3 1 2 254 3R 25999491 25999510 GAAGAAGACCAAGGAAGAGG 59 25999097 25999115 ATAATACCGTCCTTGTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 DopR2 FBgn0015129 FBtr0085467,FBtr0085468 3 2 2 60 3R 25466925 25466943 ATGGTCTTCACCTACTGTC 58 25466883 25466902 TCTTAAGAGATCTCGTCTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13614 FBgn0039194 FBtr0084614,FBtr0084615 2 2 2 107 3R 20196249 20196328 GTGTTTACACTACCAACCG 58 20196399 20196417 GTTTAGCTTACACGAGTCG 58 NA Drosophila melanogaster 50 CG6697 FBgn0027526 FBtr0084347 1 1 1 61 3R 18887481 18887499 ATATTCCGCAAGACACAGG 59 18887523 18887599 CCTTTGTACTTCAGGTTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or94b FBgn0039034 FBtr0084342 3 1 1 89 3R 18816026 18816044 TGCTTAACTGCTACATGGA 58 18816095 18816237 TCTTCACAAAGATGGGTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7031 FBgn0039027 FBtr0084313 1 1 1 60 3R 18630084 18630506 AACGTTAATTTGCAGATGCC 59 18630527 18630547 CACTGACAATTGTCAGTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6028 FBgn0038924 FBtr0084186 1 1 2 228 3R 17850771 17850875 GATCATCTGCATTGGTCTG 58 17850490 17850508 GAAGACATAGTCCATGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 glec FBgn0015229 FBtr0084157 3 1 1 164 3R 17677583 17681125 AAAGGCATGTACAATGTTCG 59 17677438 17677456 CTTCTGATCTGCCAATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-2sigma FBgn0043012 FBtr0084103 3 1 1 157 3R 17095550 17095570 CCAAGTGGTATATGAACTTCG 58 17095353 17095371 GATGCAGAAGTACAGACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7079 FBgn0038849 FBtr0084043 3 1 1 65 3R 16873763 16873851 TAATATAAGGCTGGACCGC 58 16873716 16873734 GTTAGGTCTTCATTGTCGG 57 NA DesignNoJunction Drosophila melanogaster 50 GluClalpha FBgn0024963 FBtr0100128,FBtr0083788,FBtr0083787,FBtr0100127 1 4 4 108 3R 15578394 15579482 GCTTCACTAGCAAATAATGCC 59 15579552 15579570 TTCCAGATGGTCGTATTCG 59 NA Drosophila melanogaster 50 l(3)05822 FBgn0010877 FBtr0083596,FBtr0083595 3 2 2 181 3R 14115634 14115652 AACTACGTGGACATCAAGG 59 14115413 14115490 GTAACCAATTCGTTCTCCTG 58 NA Nonspecific Drosophila melanogaster 50 CG14317 FBgn0038566 FBtr0083541 3 1 1 60 3R 13907414 13907433 TCAACTCCTTGTACCATTCG 59 13907453 13907474 GTCAGACAGATATCCTGAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14318 FBgn0038544 FBtr0083530 3 1 1 122 3R 13608131 13608152 GACTGCGAATGTTATAAACCAG 59 13606480 13606499 AGGGTATTACGTCGTTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8925 FBgn0038404 FBtr0083253,FBtr0113241 3 2 2 114 3R 12005513 12005531 TCCGACGTAGTCTTATTGG 58 12005609 12005687 ATGAGACACTTGGCTATGG 59 NA Drosophila melanogaster 50 Trax FBgn0038327 FBtr0083093 3 1 2 60 3R 11188258 11188329 GGTTACATCAGTCTAAACTGTC 58 11188349 11188368 TCATGGTAGTGATCTTACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6276 FBgn0038316 FBtr0083123 2 1 1 72 3R 11145472 11145554 GAGGAGGTCTTTAAACTAATCG 58 11145421 11145439 AGTAGTATTTGTGCCTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4860 FBgn0037999 FBtr0082623 1 1 1 118 3R 8046705 8046853 GTTCGAGAGGAGTATGGTG 59 8046605 8046623 AGGTACAGGTTATTCACGC 59 NA DesignNoJunction Drosophila melanogaster 50 Ugt86Dd FBgn0040256 FBtr0113321 1 1 1 76 3R 6954012 6954033 GAGATTATTAACTGTGATCGCG 59 6953957 6953975 AAATCTTCGCACTTTCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12420 FBgn0037797 FBtr0082222 2 1 1 173 3R 6049093 6049111 TATGAGTACGCGAAAGCAG 59 6049377 6049395 TTAAAGCAATCCGTCACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG16904 FBgn0037763 FBtr0082154 2 1 1 63 3R 5642491 5642509 CTACAACATCGGACAAGTC 57 5642374 5642464 GAATAACAGATGGATGCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8507 FBgn0037756 FBtr0082140 1 1 1 80 3R 5617769 5617852 CTTAAGCCCTACAAGAAATTCC 59 5617893 5617911 TCGGTTGAGTTTCTTGTCC 59 NA Drosophila melanogaster 50 CG8129 FBgn0037684 FBtr0082026,FBtr0082027 2 2 2 120 3R 5192794 5192813 AGTGGCTATCCTAAGATTGG 58 5192896 5192978 CACCACAACTTTCTTTCCC 58 NA Drosophila melanogaster 50 CG11997 FBgn0037662 FBtr0081972 2 1 1 60 3R 5004098 5004119 CCGAGAACTTTGAAGATTATCC 58 5004139 5004158 ATCACTTCCTCGTAATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cks85A FBgn0037613 FBtr0081949 1 1 1 160 3R 4541377 4541466 ATACAGGCATGTTATCTTGC 58 4541236 4541254 TGCGTCGGAATAGAATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31496 FBgn0051496 FBtr0081582 1 1 1 60 3R 3171454 3171472 CTACACGCAAACTATTCGG 58 3171496 3171514 CTGTGTCTCCGTATAGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Edg84A FBgn0000552 FBtr0081688 2 1 1 72 3R 2510236 2510315 TAAGACTGCGCTATTTGTG 57 2510351 2510369 ACTTCCAGATGATTTCGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3634 FBgn0037026 FBtr0078272 3 1 1 60 3L 20801974 20801993 CTGATCCTGATCTTTGAGTG 57 20801868 20801953 CTTGCTCTATAAACGAAGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7757 FBgn0036915 FBtr0074891,FBtr0074892 3 2 2 124 3L 19904510 19904529 TATACTGACCCAGGATCTGG 59 19904616 19904688 GTTTCAAGGGCTCATTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10424 FBgn0036848 FBtr0075033 2 1 1 75 3L 19090456 19090474 CATCCAGTGCTAGACTGTG 59 19090321 19090419 CAATAACAACGACGTGAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ftz-f1 FBgn0001078 FBtr0075086,FBtr0075087 2 2 2 88 3L 18745982 18746125 CAGTGAATGACAAATTCAGAGG 59 18745915 18745933 CTTGGTGTACAGGTGATCC 59 NA Drosophila melanogaster 50 MYPT-75D FBgn0036801 FBtr0075049 3 1 1 255 3L 18656384 18656402 AGGAGGAGATTTGGAGGAG 59 18656846 18657250 TTCACAGATGTCTGAAGGAG 59 NA DesignRelaxed Drosophila melanogaster 50 W FBgn0003997 FBtr0075133 2 1 1 107 3L 18163175 18165161 AGAAACCACAGAGCTTCAC 59 18163086 18163104 ATTCGATTACACGTCTCCT 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13050 FBgn0036591 FBtr0075478 3 1 1 233 3L 16272162 16272302 GACTGCTACTCATTACAATCG 58 16271949 16271967 GACCAAGACCTCCATAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5830 FBgn0036556 FBtr0075521 2 1 1 81 3L 15988283 15988301 GGACCTTCAGAAGATTGTC 57 15988152 15988238 GGATTTAACAGGAACTGCA 57 NA Drosophila melanogaster 50 CG3919 FBgn0036423 FBtr0075716 3 1 1 78 3L 14404297 14404315 CACGATGACAACTACTTGC 58 14404357 14404602 TAACCGAATTTCGCATCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG32103 FBgn0052103 FBtr0075983,FBtr0075982,FBtr0075984 2 3 3 147 3L 12398217 12398235 ACGTACCTGATGACTTCAC 59 12398023 12398106 CTTTGTGTTTGTACCTGCA 58 NA Drosophila melanogaster 50 CG10907 FBgn0036207 FBtr0076029 3 1 1 100 3L 11787836 11787913 AAATCCAAGATCCGTGAGG 59 11787977 11787995 TTTGCTGCTTTCTCTTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Ufd1-like FBgn0036136 FBtr0076223 3 1 1 67 3L 11115947 11116022 ATTATTATGCCTCCCTCGG 58 11115898 11115917 TTGAACAGCATTGGATACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fad2 FBgn0029172 FBtr0076196 2 1 1 60 3L 11017529 11017547 ATTCATGGCCTATTTGGGT 58 11017571 11017589 CTTGACCAAATCCAGTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lark FBgn0011640 FBtr0076842,FBtr0076843,FBtr0076841,FBtr0076844 3 4 5 100 3L 7333781 7333799 TACAGAGATCGCATGTACG 58 7333861 7333986 TAGTCATAGTCCCTAAAGCCA 59 NA Drosophila melanogaster 50 Lcp65Ac FBgn0020642 FBtr0076991 2 1 1 208 3L 6137933 6137951 CAAGTAACGTTGACTAGCC 58 6138123 6138211 AAAGCAAAGTTGTAGCCCT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13704 FBgn0035583 FBtr0073353 2 1 1 111 3L 4899023 4899041 CTACTTGGTGATATGCCTG 57 4900350 4900422 AAGGCCAGTGAAGTATCTG 58 NA DesignNoJunction Drosophila melanogaster 50 Shab FBgn0003383 FBtr0072974,FBtr0110776,FBtr0072975 3 3 4 300 3L 2925192 2925211 ATCCTGAACTTCTATCGCAC 59 2925474 2940796 ATATCACTGCGATAACCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13800 FBgn0035338 FBtr0072891 1 1 1 70 3L 2388781 2402572 GACTGTTCAAACCACTTGG 58 2402606 2402624 TATTCCGGTCATTGGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Start1 FBgn0035028 FBtr0089867,FBtr0089868 3 2 2 80 2R 20462814 20462894 TGCATTGTGATCAATGGAG 58 20462937 20462956 AAAGAGCGATTTGTAGATGG 57 NA Drosophila melanogaster 50 CG30419 FBgn0050419 FBtr0072275 2 1 1 71 2R 20103103 20116616 GGCAATTCCAACAAGATACTG 59 20103052 20103070 GGTCCAGTAACTGGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30411 FBgn0050411 FBtr0072016 1 1 1 72 2R 19303766 19303784 AAGATGTTTACCTGACGCC 59 19303819 19303901 TAGTTATCGCTGGCTTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3124 FBgn0034840 FBtr0072046 3 1 1 204 2R 19170849 19170867 GAACAGCTCCAATATGTGG 58 19170587 19170682 TATCGATGGTGCGTTTAGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG30284 FBgn0050284 FBtr0071684,FBtr0071685 1 2 2 191 2R 17538929 17539031 ATATACCGCAAACATCCGG 59 17538756 17538774 CCATATTCAGATCGGTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha100-3 FBgn0028669 FBtr0086602 3 1 1 60 2R 14797998 14798016 GAGGATATGAGTGCTGGAG 58 14797956 14797974 GTGGCATATGATTGACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18432 FBgn0034238 FBtr0086943 1 1 1 60 2R 13428267 13428285 ATCAACGAATGCATTGGAG 58 13428309 13428385 GCCATATGTTGAGGTTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30459 FBgn0050459 FBtr0087015 3 1 1 88 2R 12920823 12920908 CGAAACATCATAAGGAGTTCG 59 12920755 12920773 TACCACAGCATAGACAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087272,FBtr0087270,FBtr0087273,FBtr0087271 2 4 7 89 2R 11848682 11848827 CCAATTCGAGACACATATTCTC 58 11848614 11848632 GATCCATTGGATTTCGGGA 59 NA Drosophila melanogaster 50 CG12863 FBgn0033948 FBtr0087500 3 1 1 212 2R 10508294 10508363 GCAAGGTTATATGCATGGG 58 10508045 10508064 TTACAATCACCAGTCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30485 FBgn0050485 FBtr0087640 3 1 1 60 2R 9738594 9738614 CACCCTATTCTTATGATCCGA 58 9738636 9738654 AGGCTATTTCTCTGATGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ox FBgn0011227 FBtr0087861 2 1 1 227 2R 8644994 8645013 CAAATCAGCTGTGAGTTTGG 59 8644720 8644804 ATGTCCTTCCAGAGTTTGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG8083 FBgn0025709 FBtr0088560,FBtr0088562,FBtr0088561 1 3 3 89 2R 4967849 4967870 GAGGATCTCGATTTATGTACTG 57 4967919 4967991 TCATAGTTGGTTATGTCGTG 57 NA Drosophila melanogaster 50 CG8709 FBgn0033269 FBtr0113055,FBtr0088815 2 2 2 138 2R 4027872 4028032 TCAACTATCCAGACGTGTG 59 4027752 4027770 GTTAGTGGCTTCTGGAAGG 59 NA Drosophila melanogaster 50 CG9272 FBgn0032907 FBtr0089944 1 1 1 95 2L 20926989 20927007 AAAGACCGAGGTCTAACTC 58 20926856 20926931 AGCTTTGTTCTTGTAGAAGG 57 NA Drosophila melanogaster 50 hk FBgn0001202 FBtr0081180 1 1 1 74 2L 19031683 19031701 ATGAACGCATTCTTTCCCT 59 19031563 19031645 GTTTACCAAACTCGCTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 pburs FBgn0032546 FBtr0080634 2 1 1 126 2L 14416992 14417068 TGAAAGAGTGCTACTGCTG 59 14416884 14416902 CGAAGACGTATATCCATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33642 FBgn0053642 FBtr0091619 3 1 1 107 2L 13530289 13530307 AACATCTCACCGAAATGGT 59 13530375 13530456 GTCAACGTATAGTTGAAGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5885 FBgn0025700 FBtr0079900 1 1 1 91 2L 9917858 9917942 TTCCAATCTGGCTCTTCTG 59 9917785 9917803 CAGATAAGTACTAGCGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7219 FBgn0031973 FBtr0079549 3 1 1 99 2L 8005559 8006448 CTCAATCCCGACTACAGAC 59 8005478 8005497 TGATATTGTATCGTGCTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bsg25D FBgn0000228 FBtr0079085,FBtr0079084 3 2 3 274 2L 5274257 5274275 TCAGAGATCGAGGATTTGC 59 5273573 5274019 GAAGTGGTGAGGTTATTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9641 FBgn0031483 FBtr0077677 2 1 2 83 2L 2975213 2975231 GAGGAAGAGAATTGCAACG 58 2975077 2975166 TTCCATGAATCCCGTTACC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14346 FBgn0031337 FBtr0077926,FBtr0077927 3 2 2 187 2L 1368290 1368309 CTGAGCACTTACACATACGA 59 1368597 1368615 GTTAGCTCGATCACAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 stnB FBgn0016975 FBtr0111138,FBtr0111137 3 2 2 81 X 22386913 22387148 ACCATCAAATTTCAACCACC 58 22386851 22386869 GAAGTTCACGATTCTTGGG 58 NA Nonspecific Drosophila melanogaster 50 CG14617 FBgn0031191 FBtr0100652,FBtr0100651,FBtr0077352 2 3 5 129 X 21887458 21887783 GATTGCTTCAACAGCTCTG 59 21887875 21887894 TGTTTGAGGAGTAGTTTGGT 58 NA InUTR Drosophila melanogaster 50 CG14193 FBgn0030994 FBtr0074670 2 1 1 60 X 19084732 19084750 TTCATTGTCACCTGGAAGG 59 19084774 19084792 GTTTGATCTCCTGAACAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 disco-r FBgn0042650 FBtr0074251 2 1 1 60 X 16016055 16016073 AGGATCCGTTGATGATTCC 59 16016013 16016031 GGAAGCGGATACCTTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Graf FBgn0030685 FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197 3 6 6 81 X 15646356 15646433 AACCAATGTTCGTTACTCC 57 15646293 15646312 ATAGTTCTCCGGAATGAGTC 58 NA Drosophila melanogaster 50 CG2467 FBgn0030355 FBtr0073594,FBtr0073595 3 2 2 145 X 11806295 11806314 GGTAACTACACTACCAACGG 59 11805446 11805534 TTGAGATCAACCTGCATGG 59 NA Drosophila melanogaster 50 Hsc70-3 FBgn0001218 FBtr0073608,FBtr0073610,FBtr0073609,FBtr0073611 3 4 4 60 X 11697601 11697619 ATCTATTCCGTTCCACCCT 59 11697559 11697577 TTGTTCATGTCAGCATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gs2 FBgn0001145 FBtr0073494,FBtr0073496,FBtr0073495 3 3 3 175 X 11318343 11318361 ATCAACAAGACGATCCTCG 59 11322574 11322592 GAGCTTCCATCGTAGTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG41555 FBgn0085686 FBtr0114135 3 1 1 97 U 4873346 4877303 GAAAGAAACCGCTGATACG 58 4877362 4877382 TTCTCGTCTCCATAATAACGG 59 NA Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211 3 4 7 199 4 1080210 1080228 TTGGGAGTACAAGCTAAGC 59 1079962 1080047 TGAGAAGAGTCCATTGCAG 59 NA Drosophila melanogaster 50 CG11340 FBgn0039840 FBtr0085766 3 1 1 60 3R 27129455 27129473 GTTGGATGTACAACACCAC 58 27129413 27129431 AAACTCACTGGGTTATCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31126 FBgn0051126 FBtr0084663 1 1 1 60 3R 20485415 20485433 AGTTTCCATACGAAACCTG 57 20485457 20485475 GAGGATCTGTCCTAAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myo95E FBgn0039157 FBtr0100517,FBtr0084579,FBtr0084578,FBtr0100518,FBtr0100519,FBtr0100516,FBtr0100520 1 7 7 97 3R 19985254 19985381 TCTAGTCGATATGGAAAGCT 57 19985027 19985045 TGATAGGGTCCGTTATACG 57 NA Drosophila melanogaster 50 CG31145 FBgn0051145 FBtr0084480,FBtr0084479 1 2 2 83 3R 19434146 19434165 GTACGACCTTATGGACATGG 59 19433379 19434101 CCGTAGACCTTGAATGTCTC 59 NA Drosophila melanogaster 50 CG6560 FBgn0038916 FBtr0084151 1 1 1 71 3R 17712036 17712054 AAGACCACGATACTGAAGC 59 17711920 17711938 GATGTTAAATCCTGCCGTG 58 NA DesignNoJunction Drosophila melanogaster 50 Cyp12e1 FBgn0037817 FBtr0082250 1 1 2 176 3R 6261575 6261593 TATTTCCACATTGGGAACG 57 6261733 6261851 CTTGTCAGGACTAGGATCC 58 NA Drosophila melanogaster 50 Fps85D FBgn0000723 FBtr0082053,FBtr0082051,FBtr0082052,FBtr0082054 2 4 4 90 3R 5194239 5194257 GATGTGGGAGATCTTCTCC 58 5194104 5194186 CATACGATATCCCGTATCGA 58 NA Drosophila melanogaster 50 CG11977 FBgn0037650 FBtr0081961 1 1 1 60 3R 4823639 4823657 CCAACAAGAAGCACATCAC 59 4823744 4823762 TGATTTCTACCGCATTTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7918 FBgn0037546 FBtr0081789 2 1 1 83 3R 3908802 3908820 TCGTGGACAGGAATATTCG 59 3908866 3908953 TCGAAACGGTTCCTATTAGC 59 NA Drosophila melanogaster 50 CG31496 FBgn0051496 FBtr0081582 3 1 1 76 3R 3171866 3171885 CCACAGGTTATCCTACTCTC 58 3171924 3171942 GGAGTATTCAGTGTGGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10277 FBgn0037442 FBtr0113198,FBtr0081722,FBtr0081720,FBtr0081721 1 4 4 88 3R 2211842 2211860 AACAAGTACGACACCTGTG 59 2211912 2212067 GTGTGATAGGGATGTGAGC 59 NA Drosophila melanogaster 50 CG10632 FBgn0036302 FBtr0114612,FBtr0114609 1 2 4 162 3L 12533237 12533498 ATGTCTACAAGGCCAATCG 59 12531552 12531570 AGAGAACCAATCCGTAGGA 59 NA Drosophila melanogaster 50 CG6279 FBgn0036125 FBtr0076235 2 1 1 82 3L 11087696 11087717 CCAATCAGATGCTTAAGAATCC 59 11087443 11087653 CACATCCATGGTGATCCTC 59 NA Drosophila melanogaster 50 JIL-1 FBgn0020412 FBtr0076236,FBtr0076237 2 2 2 80 3L 11075165 11075183 CCGGAGAACATAATGTTCG 58 11075043 11075121 GCGATTATTGTAACATGCG 57 NA Drosophila melanogaster 50 Jon65Ai FBgn0035667 FBtr0077067 1 1 1 72 3L 6047296 6047314 GTTCCATTATCGGCAACAC 59 6047242 6047260 TAGATGGTCACCGATTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Faa FBgn0016013 FBtr0073278 3 1 1 72 3L 4073176 4073194 CGAAGGGTTCAGAATTGGA 59 4073062 4073080 AGCTTGATCTCAGACTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 YT521-B FBgn0027616 FBtr0073079,FBtr0073078 2 2 2 142 3L 3373085 3373103 GAACAATAGCGACAACGTC 59 3372842 3372982 CAAATTTACCACTCTCGTTGAC 59 NA Drosophila melanogaster 50 drpr FBgn0027594 FBtr0072798 3 1 2 117 3L 1716852 1716870 TGTGTACAACGAATCCCTC 59 1716546 1716682 ATCGTATTCATCCTCGGGA 59 NA Drosophila melanogaster 50 CG30269 FBgn0050269 FBtr0071867 2 1 1 61 2R 18556199 18556218 GAACACCAATCACTACTGTG 58 18556242 18556260 CTCATTTGCGATCGTAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sara FBgn0026369 FBtr0071641,FBtr0071642 3 2 2 117 2R 17373767 17373847 ATTATTAAGTGCGAGGACTGG 59 17373926 17373944 AAAGATCGAGAAGTGGCAG 59 NA Drosophila melanogaster 50 hts FBgn0004873 FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086547,FBtr0086548 2 6 6 81 2R 15298014 15298106 GCAACAAGAGTCACTTTGTC 59 15297952 15297970 CTGCAGCCGATATAGATGG 59 NA Drosophila melanogaster 50 cora FBgn0010434 FBtr0086508,FBtr0086506,FBtr0086507,FBtr0086509 3 4 4 115 2R 15123911 15123994 GTCTACCGCGATAAATTGC 59 15124073 15124091 TCGTACTGCTCGAATTCAC 59 NA Drosophila melanogaster 50 AGO1 FBgn0026611 FBtr0087613,FBtr0087612,FBtr0087614 2 3 3 103 2R 9835755 9835774 GTATCAGCTATGCCATACGT 59 9835605 9835689 CCAGATGATATCTGGCACG 59 NA Drosophila melanogaster 50 CG12129 FBgn0033475 FBtr0088395 2 1 1 83 2R 5921489 5921507 ACTCTGGAGAAGTCAAGGA 59 5921605 5921623 AAAGCTCCTTATCGATGCC 59 NA DesignNoJunction Drosophila melanogaster 50 hig FBgn0010114 FBtr0088608,FBtr0100119,FBtr0088606,FBtr0088607 2 4 4 86 2R 5117876 5117894 TCATGGACTGCATGTATCC 59 5117583 5117829 GAGACCATCCTGTAGAATACTG 59 NA Drosophila melanogaster 50 LvpH FBgn0002570 FBtr0088759 2 1 1 63 2R 4337512 4337533 GACGATGTGATCATCTATTCAC 58 4337408 4337429 GGTTGAGAACGATTACATAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG30378 FBgn0050378 FBtr0088854 2 1 1 61 2R 3838349 3838367 CGAGAAGATGTCCGAAGAG 59 3838389 3838410 CATCTTTGTCCTGATCAATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111082 3 1 60 89 2R 3247291 3249236 ATTGGTCATCACAGAACCC 59 3247220 3247239 CTATCCTCCTGCCTAATCCT 59 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086197,FBtr0086196 3 2 11 108 2R 2764774 2764792 TCAGCCATCATACACAAGG 59 2764586 2764604 CCTCAGGCGACATAATAGC 59 NA DesignNoJunction Drosophila melanogaster 50 gus FBgn0026238 FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753 2 6 6 62 2R 1005304 1008282 TTGGTGGATTAGATCCCGA 59 1005260 1005279 TTTGACGAATTGTTCTTCGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG41121 FBgn0069930 FBtr0111251 2 1 2 120 2L 22708254 22708272 AGTAGTGATGTATCTCCGC 58 22708356 22709162 GAACGTGGTCTAAAGAACG 58 NA Drosophila melanogaster 50 Df31 FBgn0022893 FBtr0085920 3 1 3 152 2L 21629740 21629758 AAACCCTCAGTTACAACGT 59 21628149 21628167 TGCATCTTTCTTCACAGCA 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 tup FBgn0003896 FBtr0081111,FBtr0081112 3 2 2 105 2L 18862253 18862271 AGTATTAGGGACAAGCGAC 58 18862105 18862184 CATTGTAGCAGGTTCTGAG 57 NA Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976 1 4 6 107 2L 17394484 17400407 CTTATACAGATAACAGCAGCG 58 17400476 17400494 CAATGAAGGCAATCTGTCC 58 NA Drosophila melanogaster 50 rk FBgn0003255 FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610 3 4 5 90 2L 13991706 13992947 GTGGTCGTCCTAGATTTGG 59 13991051 13991652 ACAAAGTTAGCTCCTCCAG 58 NA Drosophila melanogaster 50 CG31635 FBgn0051635 FBtr0113410,FBtr0079326 2 2 2 124 2L 6640195 6640366 GTCAATTTATGCCGTGGTC 59 6640089 6640107 TCCAAGCTATGGTTGTAGC 59 NA Drosophila melanogaster 50 Acp26Ab FBgn0002856 FBtr0079156,FBtr0079157 2 2 2 60 2L 5892670 5892688 GTTCACAATCAAGATCCCA 57 5892628 5892648 CTGTAGTCGTATAGGGTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15439 FBgn0031606 FBtr0077455 2 1 1 60 2L 4450934 4450953 TATGTGGATCGATATTCGCT 58 4450893 4450911 ACTCCTTGGGTACATTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aru FBgn0029095 FBtr0078033,FBtr0078031,FBtr0078032 2 3 3 92 2L 864328 864406 GAAACAGGGAACATAATCGA 57 864255 864274 GTTGTTGTATAGCTCCATGG 58 NA Drosophila melanogaster 50 Gs1 FBgn0001142 FBtr0078115,FBtr0078114 3 2 2 65 2L 133222 133240 GGATTAAGGCATGTGACGA 59 133269 133287 CATACTCCTCAGCTATGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9911 FBgn0030734 FBtr0074243,FBtr0074241,FBtr0074242,FBtr0074244 2 4 4 81 X 16188807 16188826 CAAATCTGAAGGAAGACTGC 58 16188675 16188763 ATGATAGGTGTACCTGGTG 58 NA Drosophila melanogaster 50 CG32806 FBgn0052806 FBtr0070302 1 1 2 76 X 1683699 1683767 ATGTGGATGCAATTAGGCT 59 1684194 1684215 TCTCTAGAGATCATCTCATCAC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177 1 4 5 148 X 938610 938688 AATCTGGATAAGGCTCCTG 58 938800 938818 CTATCTGGCATACCTGGTC 58 NA Drosophila melanogaster 50 Mgat2 FBgn0039738 FBtr0085602,FBtr0100418 2 2 2 187 3R 25845046 25845124 CAACTTCAATTATCTGGACTCG 59 25844816 25844834 GACTACTGGCATTCAGGAG 59 NA Drosophila melanogaster 50 CG6455 FBgn0019960 FBtr0084188 3 1 2 152 3R 17847984 17848135 ATCACCTACGCCAAATACG 59 17847850 17847870 AGACTTGACCTTATCGATCTG 59 NA Drosophila melanogaster 50 Mekk1 FBgn0024329 FBtr0083683 3 1 2 115 3R 14565052 14565428 AGTCCAGTCATCTGATTGC 59 14564257 14564275 ACCAATCCGATTTCGAGTC 59 NA Drosophila melanogaster 50 DNaseII FBgn0000477 FBtr0083538 2 1 1 93 3R 13845224 13845801 AAACGATGTAGATTGGTGG 57 13845858 13845876 GTACAGGTACTTCAAGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33324 FBgn0053324 FBtr0081727 1 1 1 166 3R 2272025 2272184 TTATCGCCAGTGTATCACG 59 2272314 2272332 GTGTTGCAACTAATCGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bbg FBgn0036425 FBtr0075726 3 1 1 61 3L 14504030 14504048 TGAAGAGGAGTTCTCCTCC 59 14503003 14504005 CCGATTTGACAAGGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3335 FBgn0036018 FBtr0076383 2 1 1 156 3L 9619782 9619859 AAACCCAAGATAATGATGGC 58 9620027 9620045 GGAATACGTAAGGATCGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG4942 FBgn0035960 FBtr0076524 1 1 1 66 3L 9066768 9066843 TTCGATCAAGAAGCAGTGG 59 9066873 9066891 AATCATGGTCTTCATGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13912 FBgn0035186 FBtr0072625 1 1 1 137 3L 1189810 1189895 GTCACATACTGTGAGGGTC 59 1189996 1190014 TACCTGTGATCGTATTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 IM23 FBgn0034328 FBtr0086729 3 1 1 73 2R 14270689 14270707 TGAAGTGCCTGATTCTGTC 59 14270570 14270652 GATAATCACATTTCCGGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34194 FBgn0085223 FBtr0112387 1 1 1 86 2R 13432118 13432337 CTTCCTCAATGTCCTCCTC 59 13432387 13432405 AAGACGGTGACACAATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR31808 FBgn0062978 FBtr0080943 2 1 1 114 2L 16715863 16715884 CCACTACTGAAATTTCTAGAGC 58 16705789 16715788 GCGTAATATGCAAGTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9886 FBgn0031428 FBtr0077770 2 1 1 134 2L 2421896 2421914 TACTGGATCCTCAACTCAG 57 2422011 2422086 CTTTAATGACTGGCTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mir-310 FBgn0067694 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:P:35Bd FBgn0028882 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snmRNA:430:CR33734 FBgn0053734 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Pp1-Y2 FBgn0046698 FBtr0113894 2 1 1 115 YHet 280285 280303 ATCTATCGAGACCATGTGC 58 291297 291315 AACAGTCGACAAATGTACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0269 FBgn0029067 FBtr0077226 2 1 1 77 X 21192937 21192955 CATGTGGACTACTTCCTGG 59 21192793 21192811 TCCGTAAATCTCCATGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32511 FBgn0052511 FBtr0077258 1 1 1 60 X 21027595 21027613 CAATGGAGCCTACTACGTG 59 21027553 21027571 GTTGTTGTACGAGAAGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 unc FBgn0003950 FBtr0077259 3 1 1 276 X 20983986 20984067 ATAGAAACCAAGCTCCTGC 59 20983728 20983746 GGACCTTCTGAAACTTTGC 58 NA DesignRelaxed Drosophila melanogaster 50 r-cup FBgn0031142 FBtr0077269 3 1 2 133 X 20895466 20895484 GATCCACCTACTCCTATGC 58 20895082 20895100 CTCATGGAGCAAGTAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 sw FBgn0003654 FBtr0089406,FBtr0089407,FBtr0089401,FBtr0089404 1 4 13 137 X 20101657 20103198 ATTCACAGACGACGAAGAG 59 20101538 20101556 TTCTTGATCTCGAGTGGTG 59 NA Nonspecific Drosophila melanogaster 50 CG17003 FBgn0031082 FBtr0070035 1 1 1 61 X 19895258 19895276 CAGAACGATGCAAATTCCG 59 19895215 19895233 ATCGATGTACCTACCACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nep3 FBgn0031081 FBtr0070000 1 1 1 119 X 19859149 19859239 GGATATTCCTGCAATCAATGG 59 19859320 19859338 CTTCTCCAGTACGTTACGT 58 NA Drosophila melanogaster 50 CG32529 FBgn0052529 FBtr0100839,FBtr0074800,FBtr0074801 1 3 3 80 X 19795511 19795910 ACCGTATATGGAATATCCACC 58 19795952 19795970 ATATGAGGCCCAGTATGGA 59 NA Drosophila melanogaster 50 CG14204 FBgn0031032 FBtr0074729 3 1 1 105 X 19479667 19479744 CTGTGATGTTCAAGAATGGA 57 19479812 19479830 TAACCGAACATAGTACCGA 57 NA Drosophila melanogaster 50 CG8034 FBgn0031011 FBtr0074684 1 1 1 179 X 19177216 19177397 CCGTTCAATTATGGCTGAG 58 19177055 19177073 ATCACAAATAGGGCTTTGC 58 NA Drosophila melanogaster 50 tgy FBgn0030984 FBtr0074702 2 1 2 145 X 19020802 19020820 ATTGGTTCATAAAGGCGGA 59 19020312 19020399 CATGTATGACTCGTTCTTCTG 58 NA Drosophila melanogaster 50 fu FBgn0001079 FBtr0074602 2 1 1 140 X 18554036 18554054 TGTTCCTCAACTTCCTCAC 59 18554226 18554244 CAATCCGTTCTACAAGCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Fim FBgn0024238 FBtr0074443,FBtr0074441,FBtr0074442 1 3 3 87 X 17182017 17182035 AACAACCATCCAGGATTGG 59 17181556 17181966 AATTGCGGTAGGTCTTCTC 59 NA Drosophila melanogaster 50 rok FBgn0026181 FBtr0074286 3 1 1 88 X 16520824 16520908 TTACGAATGCAAGAGATGC 58 16520754 16520773 GATCGTGATTGAGCTTACAG 58 NA Drosophila melanogaster 50 eIF-2alpha FBgn0004925 FBtr0074300 1 1 1 66 X 16339861 16339879 TTTAAAGGCTCTGGAGGTG 59 16339813 16339831 GAACTCTCCATCGTACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9281 FBgn0030672 FBtr0074057,FBtr0074056 2 2 2 81 X 15601693 15601779 TGATTATGGTTCAGAACGTG 57 15601631 15601649 AGATCAATTCCGAACTCCA 58 NA Drosophila melanogaster 50 CG9213 FBgn0030655 FBtr0074071 2 1 1 108 X 15466547 15466565 GATTTCCGGCTAACTTTGC 59 15466393 15466411 GATTTCACCTTTCCGATGG 58 NA DesignNoJunction Drosophila melanogaster 50 Flo-2 FBgn0024753 FBtr0073951,FBtr0073949 3 2 6 124 X 14818434 14819687 CAAGATCATGAAGTCATCTTCG 59 14820853 14820871 GGATCGTCTGCTTGATCTC 59 NA Drosophila melanogaster 50 CG9400 FBgn0030562 FBtr0073920,FBtr0112982 2 2 2 60 X 14182364 14182383 CAATGATTTAGACAGCGAGG 58 14182323 14182344 GGGTATATTGTTGTCCAAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1640 FBgn0030478 FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769 2 6 6 83 X 13268114 13268132 ATTCAACCGTTAGACGTCC 59 13268315 13268334 TATGTTATCCAGTGTGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4645 FBgn0030435 FBtr0073692 3 1 1 143 X 12805133 12805450 TTCTCTGGGTGATCAATATCTC 59 12805554 12805572 TCAGGATTCCAACGATGAG 59 NA Drosophila melanogaster 50 Cpr11A FBgn0030394 FBtr0073650 2 1 1 158 X 12381932 12381950 TTCAAGTACAATCCCAGCG 59 12382072 12382365 GTTCTGGGTCTTCAGTTCC 59 NA Drosophila melanogaster 50 CG1924 FBgn0030377 FBtr0073634 3 1 1 60 X 12072506 12072524 CGAGGACGTTGATGTAGAG 59 12072464 12072485 CTTATAGGTAGGCTTCTCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Upf1 FBgn0030354 FBtr0073596 3 1 1 88 X 11795423 11795441 GACTTTGGGCAAATATCGC 59 11795284 11795302 GAGAACTGATTCAAGCTCC 57 NA DesignNoJunction Drosophila melanogaster 50 SelG FBgn0030350 FBtr0073570 1 1 1 169 X 11781587 11781668 GCCATTAAGCAGCTATTCC 58 11781801 11781819 CTTAGTCCACCTGATCCTG 58 NA Drosophila melanogaster 50 CG2446 FBgn0030328 FBtr0073615,FBtr0073618,FBtr0073619,FBtr0073617,FBtr0073616 2 5 5 195 X 11606950 11606968 CAATGATCTCAGTCCCGAG 59 11606371 11606389 CTCCGATTCTGTAGCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Sk1 FBgn0030300 FBtr0073497,FBtr0073498 3 2 2 60 X 11339337 11339355 ATCTACCTGGTGATCATCC 57 11339379 11339397 TCAGCATGAAATTGAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kap3 FBgn0028421 FBtr0112931,FBtr0112934,FBtr0112933,FBtr0112932,FBtr0073459 3 5 5 175 X 11231085 11231169 GCAATATAAGATTGGATCGCTG 59 11230931 11230949 TGATGTCCAGGAAATCGTC 59 NA Drosophila melanogaster 50 CG2061 FBgn0027498 FBtr0073429,FBtr0073430,FBtr0073431 2 3 3 60 X 10987593 10987614 CTATTGGCTAAACGATGTACTG 58 10987635 10987653 TATGGATACCAGGTCATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11203 FBgn0030249 FBtr0073385,FBtr0112978 1 2 2 185 X 10811066 10811140 TAATCATTCCACAGGAGTGC 59 10811285 10811306 AGGATAGATCGTCCTTATTTCC 58 NA Drosophila melanogaster 50 ras FBgn0003204 FBtr0071496,FBtr0071494,FBtr0071495 3 3 3 90 X 10641989 10642007 CTACCCTATTTGGAGTGCG 59 10642057 10642150 GGCCATTATAGATCATATCCCTC 59 NA Drosophila melanogaster 50 l(1)G0232 FBgn0028341 FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407 1 6 6 83 X 9524045 9524065 CCGTCGGATTATATTAATGCG 59 9523917 9524001 CTTTGGTAATGGACCTTGAG 58 NA Drosophila melanogaster 50 CG32699 FBgn0052699 FBtr0110850,FBtr0071369 2 2 2 130 X 9468297 9468392 ATGGACCTGGAGTATTACG 58 9468185 9468204 ATTGTTGGCATACAGATTGG 58 NA Drosophila melanogaster 50 CG15369 FBgn0030105 FBtr0071309 1 1 1 61 X 9111319 9111337 GTATCCAGGTGACCTTCAG 59 9111362 9111380 TTAAGCATCGTGTTTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0071296,FBtr0112965,FBtr0071294,FBtr0071298,FBtr0071295,FBtr0071297 3 6 6 107 X 9009733 9009804 AATGTAGTAGTGCCTCCAC 58 9009875 9009893 CATATAGATGCGCATGCAG 58 NA Drosophila melanogaster 50 sni FBgn0030026 FBtr0071183 1 1 1 60 X 8136242 8136263 CTCGAACATACACATACTTGAG 58 8136142 8136160 GACTAGCTTGTCATAGGCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG32720 FBgn0052720 FBtr0071082 1 1 1 110 X 7428105 7429632 CAAATCGCTGGTTTGTCTG 59 7427254 7427272 AACAGAAGGAACCAGAAGC 59 NA Drosophila melanogaster 50 CG1999 FBgn0029947 FBtr0071054 3 1 1 60 X 7253548 7253566 TGAAATATCCCGTGAGGTG 59 7253590 7253608 GCGTTTATATGTCCTGACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17717 FBgn0029877 FBtr0070944,FBtr0070943 3 2 2 87 X 6484217 6484235 TGATTGTGAAGCATCTGCT 59 6484350 6484369 ATATTATCCATGCACTGCAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG34417 FBgn0085446 FBtr0112705,FBtr0112704 3 2 5 86 X 6481126 6482107 CAGGAATATGAGAACGTCCA 59 6482155 6482174 CAAGAAATGGTGTATCAGCG 59 NA Drosophila melanogaster 50 CG4766 FBgn0027546 FBtr0070891 3 1 1 186 X 5893075 5893094 GATCTTCTGTCCAAGGAGAG 59 5892784 5892802 GATTGCCTGGTAAATCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15765 FBgn0029814 FBtr0070817 1 1 1 186 X 5728500 5730078 CAATCTAGTGACGGTCGAC 59 5730802 5730820 CATCAGTGGTAGGGATTCG 59 NA Drosophila melanogaster 50 CG12693 FBgn0029705 FBtr0070654 1 1 1 81 X 4221588 4221671 CTGATTCACCTGGAGATAAGG 59 4221527 4221545 GACTCGAAACCTCCTTCTG 59 NA Drosophila melanogaster 50 CG15572 FBgn0029702 FBtr0070647 2 1 1 60 X 4163387 4163408 TGTGAATCTGGGAGTTAATCTG 59 4163426 4163447 GCTGGTACTATTGGTAATACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mnt FBgn0023215 FBtr0070580,FBtr0070579,FBtr0070578 1 3 3 121 X 3593201 3593219 GAAGGAGTGCTATGACCTG 59 3593301 3593387 CTTCATGACTCAAGGAATTGAC 59 NA Drosophila melanogaster 50 ng3 FBgn0010295 FBtr0070539 2 1 1 60 X 3135856 3135876 AGAGGACGTATCACTATACAC 58 3135816 3135837 CTATAGATATGTCGTATCCGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kirre FBgn0028369 FBtr0070560,FBtr0070559 3 2 2 67 X 3024318 3024336 AATGACCGGAGACTTTACC 58 3024435 3024454 CTATGGCATCGTGATATTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG3526 FBgn0040355 FBtr0070546,FBtr0113325 1 2 2 60 X 2787336 2787357 ACAATAGGATGACCTTCTATCG 59 2787377 2787396 GAGCAAAGATCATAGTCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 w FBgn0003996 FBtr0070490 3 1 1 156 X 2685364 2685454 CGATAAATGTGTTCACCTCAG 59 2685228 2685246 ATCATCGGATAGGCAATCG 59 NA Drosophila melanogaster 50 CG11596 FBgn0023522 FBtr0070319,FBtr0070318,FBtr0070320 3 3 3 63 X 1823153 1823173 GTATAAACCGATCATCGACAG 58 1823198 1823289 ATCCTTCAGCTCGAAATCG 59 NA DesignRelaxed Drosophila melanogaster 50 br FBgn0000210 FBtr0070265 1 1 7 132 X 1531146 1531164 CCAATATCGATCCCTCAGC 59 1552857 1552875 GATGAGGTAGAACTGGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG40867 FBgn0085529 FBtr0113942 3 1 1 201 U 9327270 9327288 CAATCCCATTGGATACTGG 57 9327087 9327105 TTTGCCTTGTATCACAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40992 FBgn0085550 FBtr0113963 3 1 1 60 U 5052775 5052793 TCTGTATGTTTGAGGTCGG 58 5052733 5052752 GTCGATATACAACAGTCCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40801 FBgn0085520 FBtr0113933 2 1 1 60 U 2929875 2929893 CTGCTGTAAACAAGAAGGC 59 2929759 2929777 ACCTTGCCGAGTTTATAGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41524 FBgn0085668 FBtr0114115 2 1 1 112 U 2873653 2873672 TTACACTTTCCACATTTCGC 59 2873170 2873578 AGAGAAACGGTTTACAGGA 58 NA Drosophila melanogaster 50 CG40275 FBgn0058275 FBtr0113858 3 1 2 83 U 1839079 1839097 TAGTGTTGTTGGTGCTACG 59 1839144 1840678 TCATTATGTGATCGCTCGG 59 NA Nonspecific Drosophila melanogaster 50 CG40269 FBgn0058269 FBtr0114296 3 1 1 73 U 395321 395339 TCAAAGATGGTCCTATGCC 59 395266 395286 CCGAGATTAGGATGTTATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32016 FBgn0052016 FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232 1 6 6 82 4 974520 974659 GCACTACTCTCAAGAATTGC 58 974457 974475 GAGTTGGAGAGTTACCGTG 59 NA Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 3 8 8 80 4 671648 672941 TAACAGCACAGATTGATGGT 59 671587 671605 TCAAATACGGGTGAAAGCT 59 NA Drosophila melanogaster 50 Asator FBgn0039908 FBtr0089107 1 1 3 80 4 502324 508432 TACGAGTAGAGGAAACGAC 58 502262 502281 TGATCTTGTTTGGAAGAAGG 57 NA Drosophila melanogaster 50 CR33328 FBgn0053328 FBtr0082858 3 1 1 65 3R 9464149 9464167 TATATTCGCGACAGACCAC 59 9464102 9464120 ATTACAAGGCTGGTCAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1815 FBgn0039863 FBtr0085823 2 1 3 254 3R 27501092 27501186 ACGATCCAAAGGGTATACC 58 27501404 27501422 CTACCATGTTGGATCGGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31002 FBgn0051002 FBtr0085813 2 1 1 60 3R 27219703 27219721 TGGTCCTCAACATAAAGCA 58 27219661 27219681 AGCAGCCGTATAATTGTAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gycbeta100B FBgn0013973 FBtr0085753 1 1 1 84 3R 26984104 26996735 GAAGAAACCTATCGGCTCC 59 26996783 26996801 CCTTCATGATAACGGGTCC 59 NA Drosophila melanogaster 50 CG12069 FBgn0039796 FBtr0085728 2 1 1 82 3R 26520393 26520479 GATTTGCCAAGAAAGTGGA 58 26520329 26520349 CTTCGATTGGATAATCTCTGG 57 NA Drosophila melanogaster 50 CG7802 FBgn0039704 FBtr0085486,FBtr0085485 3 2 2 80 3R 25648409 25648428 AGCATCTACTACGACAATGC 59 25648471 25648554 CGAGAAGACGTATCCTGTC 59 NA Drosophila melanogaster 50 Ef1gamma FBgn0029176 FBtr0085392,FBtr0085393 2 2 2 191 3R 25046027 25046167 AGGAACTCTGTACACTTACC 58 25046384 25046402 CTCAAGTACTGTCCTTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 2 8 8 121 3R 24962130 24962213 ACCAATGATAAGCCCTACTC 58 24962294 24962315 CCCATGAACATATAGGTTTCAC 58 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085377 1 1 8 100 3R 24959596 24959614 TAAACCAAACGACCGAGTC 59 24959678 24960291 TTTCTCCATGTAACCGAGC 59 NA Drosophila melanogaster 50 CG11880 FBgn0039637 FBtr0085373,FBtr0085372,FBtr0085371 2 3 3 74 3R 24951436 24951454 ATCACTGGATGTGACACTC 58 24951561 24951579 CTTCATAGTGTCCCAGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11873 FBgn0039633 FBtr0085365 2 1 1 94 3R 24929963 24930045 CTAATCAGGTATCATTGCATGC 59 24930100 24930118 TTGTCCTGGAATTCCAGAG 58 NA Drosophila melanogaster 50 CG9988 FBgn0039591 FBtr0085305 2 1 1 80 3R 24462887 24462905 GTAGAACTATGCCGAAGGT 58 24462946 24463022 TGTCGCCTATCTTATTGTATCC 59 NA Drosophila melanogaster 50 Mes-4 FBgn0039559 FBtr0085267 2 1 1 122 3R 23761874 23761892 GGACAAAGGTTGTCATCTG 58 23761702 23761789 GCCTATTAAGAGTGACAACG 58 NA Drosophila melanogaster 50 btz FBgn0045862 FBtr0085220,FBtr0085221 2 2 2 60 3R 23528130 23528148 GTACTATGTGACCGGAACG 59 23528172 23528190 ATTAACATACGGTGCCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31055 FBgn0051055 FBtr0085244,FBtr0085242 1 2 3 124 3R 23512758 23512776 ATGACACCCAATTTGTCGA 59 23512282 23512671 TTGCCGAATCTTACAATCCT 59 NA Drosophila melanogaster 50 CG5938 FBgn0046247 FBtr0085161,FBtr0113355,FBtr0085162,FBtr0085159,FBtr0085160 3 5 5 263 3R 23101495 23102020 GCAACATGACGGTATTTGG 59 23102313 23102331 TGTTCTCCCATTCGAACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5938 FBgn0046247 FBtr0085161,FBtr0113355,FBtr0085162,FBtr0085159,FBtr0085160 1 5 5 252 3R 23101506 23102031 GTATTTGGGCTAAGCAACC 58 23102313 23102331 TGTTCTCCCATTCGAACAG 59 NA DesignNoJunction Drosophila melanogaster 50 Nep5 FBgn0039478 FBtr0085148,FBtr0113296,FBtr0085147 1 3 3 104 3R 22886399 22886420 CCTTATCATAGGATTCGATGTC 57 22886254 22886334 TCGTTGTTGAAAGGAAACG 58 NA Drosophila melanogaster 50 BM-40-SPARC FBgn0026562 FBtr0085094 1 1 1 80 3R 22695845 22695927 GGAGAAGAACAAGATCAAGGA 59 22695785 22695803 TTGAGTAGATTGTGCTGCA 59 NA Nonspecific Drosophila melanogaster 50 Lerp FBgn0051072 FBtr0085097,FBtr0085099,FBtr0114572 1 3 3 85 3R 22674504 22674587 GATGGCAAGATTGAGATTGAC 59 22674439 22674457 GAATAGTCCGTCATTGCCT 59 NA Drosophila melanogaster 50 CG14551 FBgn0039408 FBtr0084971 3 1 1 153 3R 21887749 21887767 GGGAGAACCTAAGACTCCT 59 21887302 21887320 TAAATGGTGACCACTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5028 FBgn0039358 FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290 3 5 5 126 3R 21507753 21507830 AACTACGGTGACCATTACG 59 21507919 21507938 CCAGATGGTTCAACATATCG 58 NA Drosophila melanogaster 50 jigr1 FBgn0039350 FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887 2 6 6 95 3R 21474753 21474771 GATAGGTCAAACAAGCGGT 59 21474830 21474920 CCTTATACTGGTGGCATCG 59 NA Drosophila melanogaster 50 jigr1 FBgn0039350 FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887 2 6 6 95 3R 21474753 21474771 GATAGGTCAAACAAGCGGT 59 21474830 21474920 CCTTATACTGGTGGCATCG 59 NA Drosophila melanogaster 50 CG31439 FBgn0051439 FBtr0084845 2 1 1 60 3R 21223728 21223746 TACTACATCTGTCGTCACC 58 21223686 21223704 CGTTGAAGTACCTATCACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31097 FBgn0051097 FBtr0084861 3 1 1 93 3R 21122616 21122637 CAGGACTTTAATGTCCTAACAC 58 21122248 21122562 TTACGGCAAAGAATGTTGG 58 NA Drosophila melanogaster 50 CG13658 FBgn0039315 FBtr0084826 1 1 1 180 3R 21114185 21114206 CATCTTCATGGTAATGGATACG 58 21114346 21114430 GGTCATCATGAAGAATTCGT 57 NA Drosophila melanogaster 50 CG33096 FBgn0053096 FBtr0114464 1 1 1 113 3R 20924089 20924107 TCTTTGGGTACGACTACTC 58 20924183 20924266 TGATGTTGAATCTGGTTCTC 57 NA Drosophila melanogaster 50 CG11820 FBgn0039270 FBtr0084765 1 1 1 62 3R 20891643 20891661 GACTTGTGACCAAACAGTC 58 20891744 20891765 CGGCTATAATCTCTTCTATAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18410 FBgn0039226 FBtr0084741 1 1 1 96 3R 20624871 20624889 TTGGGATTCAAGGACAAGG 59 20624248 20624266 CAATCAATCCCTTGATGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5768 FBgn0039198 FBtr0110867 3 1 2 117 3R 20212411 20212429 GGGTATTACAGCATCTGCA 59 20212190 20212333 TAGCCCATGTTATCTACAACTG 59 NA Drosophila melanogaster 50 CG34290 FBgn0085319 FBtr0112486 1 1 1 160 3R 20115194 20115212 ATCGTTGGATTCTATCCGC 59 20114891 20115017 ATTCCGAAAGTTGGATGGT 59 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 2 5 6 82 3R 20045369 20045389 CATGAACATCTACAACGAACC 59 20025659 20045326 GTGGATTCACGGTAAATGAC 58 NA Drosophila melanogaster 50 CG18754 FBgn0042106 FBtr0084439 3 1 1 117 3R 19511053 19511071 AACAACAGTACATCAGGGT 58 19511216 19511235 CAATAGACAAATGGGTTGGA 57 NA DesignNoJunction Drosophila melanogaster 50 orb FBgn0004882 FBtr0084385,FBtr0084384,FBtr0100227 1 3 5 125 3R 19094013 19094120 TTCACCTTTAGTCAGCGAC 59 19093906 19093924 AAACTGGTGTAACCTTGCT 59 NA Drosophila melanogaster 50 orb FBgn0004882 FBtr0100228,FBtr0084386,FBtr0084385,FBtr0084384,FBtr0100227 1 5 5 80 3R 19092492 19092510 TGGATGATTCTCACTGTGG 58 19092375 19092450 GAATGACTTCAACATCCTTGG 59 NA Drosophila melanogaster 50 HP1c FBgn0039019 FBtr0084309 1 1 1 79 3R 18571593 18571611 TCCAGAAATTCGAGGAGTC 58 18571654 18571672 CAGCTTCTGGATCTCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dph5 FBgn0024558 FBtr0084280 3 1 1 61 3R 18408774 18408792 CAAGGGTCTGGAGATAGTG 58 18408731 18408750 GAATCGAGGTGTACATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5278 FBgn0038986 FBtr0084281 3 1 1 109 3R 18385411 18385431 CGTGCACATTATCATGTACTC 59 18384981 18385340 AGAACTGGATCATCTGCAG 59 NA Drosophila melanogaster 50 oa2 FBgn0038980 FBtr0100322,FBtr0084260 3 2 2 93 3R 18340440 18340751 TCTTCCTCTGGTACATCGT 59 18340808 18340826 GAGTTGAAGTAGCCGATCC 59 NA Drosophila melanogaster 50 CG5376 FBgn0038977 FBtr0084292 1 1 1 75 3R 18313859 18313940 TATTCAAGGATCTTAAGTCCGC 59 18313805 18313823 TATTTCTTGGCTTCTGCCA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG5874 FBgn0038872 FBtr0084051 3 1 1 82 3R 17054078 17054159 CTCTATCGAACGAACACGT 59 17054205 17054223 GATAAGGGCTTTGTCAGGT 59 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0110938,FBtr0110939,FBtr0084021,FBtr0084022 3 4 12 131 3R 17027123 17027417 TATATGGTAGCATGCGTCG 59 17027512 17027530 AATACTGATGGTCCGTCTG 58 NA Drosophila melanogaster 50 RpS30 FBgn0038834 FBtr0083969,FBtr0083970 3 2 2 89 3R 16676605 16676623 TGGACTAGAGACCATCGAG 59 16676763 16676781 TTGAATCCATGGATCTGGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5466 FBgn0038815 FBtr0083913 1 1 1 65 3R 16445309 16445327 GTTGGACCAGATTACCCAC 59 16445586 16445607 GATTCTATTGAGTCCAGATTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG10889 FBgn0038769 FBtr0083839 2 1 1 60 3R 15861225 15861243 GACACATCGTAATCGATGG 58 15861183 15861203 GAGAATACTAGATTGTTGCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11391 FBgn0038732 FBtr0083789 3 1 1 60 3R 15605390 15605408 GACTCATTACCCTGGTCAC 59 15605432 15605450 ATTTCACTGGAAATCAGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sqz FBgn0010768 FBtr0083733 1 1 1 167 3R 14993956 14993974 AACAGCAAATGGTCATGGA 59 14994105 14994303 GATTCGGGTCGTACTTCTG 59 NA Drosophila melanogaster 50 CG7998 FBgn0038587 FBtr0083563 3 1 1 152 3R 14053482 14053500 CGATGATCTGTTCAACGTG 58 14053615 14053692 TAAACACCAGCCTTCTTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 beat-IIa FBgn0038498 FBtr0083453 3 1 1 193 3R 13153084 13156753 CATGCAAGTTGTTGAACTG 57 13147181 13147199 TCAGATTATCAATGGTGCG 57 NA Drosophila melanogaster 50 CG5265 FBgn0038486 FBtr0083407 1 1 1 60 3R 12965371 12965390 CAACAGTCAGTTTGGAAAGG 59 12965413 12965431 ATCGTCGGTAAACCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3983 FBgn0038473 FBtr0083426,FBtr0083425 3 2 2 80 3R 12897405 12897425 CAAGAGCTCCATCATAAACTC 58 12897283 12897363 TGCATTGATTTGGTCACTC 58 NA Drosophila melanogaster 50 Actn3 FBgn0015008 FBtr0083380 3 1 1 60 3R 12803013 12803032 GGCCTTGAAATCTCTTTCAG 58 12802972 12802992 TGTAGTGGTACAAGATGACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 srp FBgn0003507 FBtr0083216,FBtr0083215,FBtr0100595 3 3 3 90 3R 11827967 11827986 ATGGAAAGTGGTTCATTGGT 59 11828036 11828140 GTGGTTTCATATCGTCATTGAC 59 NA Drosophila melanogaster 50 CG5516 FBgn0038389 FBtr0083212 2 1 1 256 3R 11789949 11789967 GACACTGGAGCTATGAGTG 59 11790187 11790205 GTCTGATTCGGATGAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14872 FBgn0038346 FBtr0083156 1 1 2 60 3R 11335250 11335271 CCATACTCAATAACAGTTGGTC 58 11335211 11335229 GAGTTGTTCCAAGGAAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6276 FBgn0038316 FBtr0083123 3 1 1 67 3R 11144889 11144907 ATGACTACGAACAAGAGGC 59 11144840 11144858 CATCTTGTGTAGGTCCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Set FBgn0014879 FBtr0083062 3 1 1 82 3R 11090604 11090622 AGATAATGATGAGGAGGCA 57 11090668 11090749 ACTTGTCATCCTCATCCTC 58 NA Nonspecific Drosophila melanogaster 50 CG3631 FBgn0038268 FBtr0082997,FBtr0114533 2 2 2 153 3R 10707240 10707321 CGATATGACCTATTGCAAATCG 59 10707433 10707453 TCCATTGTCTATAAGCACCAC 59 NA Drosophila melanogaster 50 CG14855 FBgn0038260 FBtr0082991 2 1 1 120 3R 10622830 10622851 GATTTCTCAACCATATTCGCTG 59 10622929 10623010 GTGAAACGTATTCGAGAATCAG 59 NA Drosophila melanogaster 50 CG10097 FBgn0038033 FBtr0100525,FBtr0100524 3 2 2 110 3R 8220864 8220882 TATACCTACACCAAGGCAC 58 8220676 8220694 CACTGGTTCTTTGAACGTG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG4860 FBgn0037999 FBtr0082623 3 1 1 145 3R 8046859 8046877 GAACTCGGTCTCATGTCAG 59 8046602 8046621 CCCAGGTACAGGTTATTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 Ugt35a FBgn0026315 FBtr0082374 1 1 1 60 3R 6997411 6997429 CCTTAGCAAAGGAACTGTC 58 6997369 6997392 GAGAAATAGATTACTCCCTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Adk3 FBgn0042094 FBtr0082331,FBtr0082330 3 2 2 70 3R 6713947 6713966 GAATTGATCTGCAAGAACCA 58 6713896 6713914 TTTATGATGTTCTGGCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rbp1 FBgn0010252 FBtr0082278,FBtr0082277,FBtr0082276,FBtr0082275 3 4 4 76 3R 6610338 6610356 TATAGGGAGTGGGACTTGG 59 6610396 6610414 CCTTCTATCTCGTGCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12950 FBgn0037736 FBtr0082170 2 1 1 80 3R 5564291 5564309 TTATAGATGTCGCGTGGAC 59 5564099 5564248 TGTTTGGGTGGAGATATGAC 59 NA Drosophila melanogaster 50 AP-47 FBgn0024833 FBtr0082114 3 1 1 60 3R 5384455 5384473 AAGTATCGCAAGAACGAGG 59 5384413 5384431 CGTTTGCGAGAAGATTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8176 FBgn0037702 FBtr0113208,FBtr0113207 2 2 4 102 3R 5348606 5349271 CAATCAAGATCAGACACAACAG 59 5349333 5349352 GTTCAATTGCTTCTTCCCAG 59 NA Drosophila melanogaster 50 RhoL FBgn0014380 FBtr0082124 3 1 1 61 3R 5323516 5323611 CTATCCCAGTACCAACTGC 59 5323473 5323492 TTTCGAATGAGGTCCTACTG 59 NA DesignRelaxed Drosophila melanogaster 50 ps FBgn0026188 FBtr0082038,FBtr0111031,FBtr0111029,FBtr0111030,FBtr0082037,FBtr0111028,FBtr0111027 3 7 9 272 3R 5269787 5270772 ATATTCATCATGGCGAGAC 57 5271075 5271093 TATCGACGATCTTGTTGGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG11984 FBgn0037655 FBtr0082008,FBtr0082009,FBtr0082007 2 3 3 163 3R 4837857 4837875 CATTGCGGAACTGTTATCG 59 4837617 4837636 ATGTTGAGACTATGGGATGC 59 NA DesignNoJunction Drosophila melanogaster 50 Dhod FBgn0000447 FBtr0081890,FBtr0081891,FBtr0081889 2 3 3 60 3R 4478123 4478141 ATTCGATAAGAACGCGGAG 59 4478081 4478105 CTCTATAAATCCGAATCCTAGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11718 FBgn0037585 FBtr0081852 1 1 1 95 3R 4192157 4193214 ATCAGAAATCGAGTTCCCAG 59 4192081 4192099 GATAGTGCTCGTGGAACTC 59 NA Drosophila melanogaster 50 CG11672 FBgn0037563 FBtr0081865 3 1 1 60 3R 4116102 4116124 GAGACAGAGACTACAAACTATGG 59 4116064 4116082 CAATCTCTGCCAGATTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Est10 FBgn0015569 FBtr0081557 2 1 1 87 3R 3313167 3313247 ATTCTATCCAGAGGTTTCAAGG 59 3313101 3313119 GTTAAGACCGAGATCGCTC 59 NA Drosophila melanogaster 50 sas FBgn0002306 FBtr0081571,FBtr0081570 3 2 2 113 3R 3008658 3008676 AGACGAGTTCATCAAACGG 59 3008750 3008839 CGCCATTTACAGATTCATAGTC 59 NA InUTR Drosophila melanogaster 50 Sas-4 FBgn0011020 FBtr0081569 3 1 1 60 3R 2977966 2977984 TGTAAGCATATTCGAGCTG 57 2978005 2978026 GGAGTTCATATCAATGTTTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1104 FBgn0037467 FBtr0081643,FBtr0081644 2 2 2 138 3R 2897573 2897645 GTATCACGATTTGGTCCTG 57 2897453 2897471 CTTAGAAATCGATGCACGT 57 NA Drosophila melanogaster 50 Pak FBgn0014001 FBtr0081714,FBtr0114607,FBtr0081715,FBtr0081716 2 4 4 85 3R 2184960 2184978 ATTTCAGGACTTCCTCGAC 58 2185026 2185116 TTAGGAAGGGATGCTTTAGC 59 NA Drosophila melanogaster 50 Gasp FBgn0026077 FBtr0078619 2 1 2 144 3R 1920000 1920018 GCACAGTGTTCAAGATTGG 59 1919322 1919340 CCTTCACTGTTCAGTCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1213 FBgn0037387 FBtr0078643,FBtr0078642,FBtr0078644 2 3 3 64 3R 1671125 1671143 GATGCAGCTCTTCATTGTG 59 1671242 1671261 GGTATGAAACATACGGTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG1208 FBgn0037386 FBtr0113197,FBtr0113196 1 2 2 117 3R 1662757 1662830 TTTAATTGGTATCGCAACGG 58 1662910 1662928 AATCGTAAGGAGCAACTGG 59 NA Drosophila melanogaster 50 sec8 FBgn0086685 FBtr0078677 3 1 1 167 3R 1581264 1581282 CCTCCAATTATCTGGAGCA 58 1581047 1581133 TGAGTATTTCGTCTGGCTC 59 NA Drosophila melanogaster 50 CG31547 FBgn0051547 FBtr0078765,FBtr0078764 2 2 2 136 3R 1317155 1317277 AATATAATACCGGTGCGGG 59 1317037 1317055 GCATTTATTCCGTCCTCCA 59 NA Drosophila melanogaster 50 CG2663 FBgn0037323 FBtr0078795,FBtr0078796 3 2 2 193 3R 1227160 1227241 TACTGGACTATGTGCACTG 58 1226985 1227003 GTCCAGGATGAAGATGTCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG9809 FBgn0037248 FBtr0078946 1 1 3 90 3R 249511 249531 CATAGAGACTCGCAAATAAGC 58 249378 249459 CAGCATTATCCAAGTCAGC 58 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113343 2 1 15 193 3R 111913 120842 TTAAAGTTCACCGCTTCTG 57 120999 121298 GATGTTGTACTTATCGCGA 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 nAcRalpha-80B FBgn0037212 FBtr0113189,FBtr0089255 1 2 2 80 3L 23262560 23262578 ATATCGATCGACTCGTGTC 58 23262622 23271328 ATTCGCCGTAATGTTTCCT 59 NA Drosophila melanogaster 50 CG33771 FBgn0053771 FBtr0091772 1 1 1 60 3L 22642928 22642946 ACTACTACATGCACGACTG 59 22642968 22642988 CCAGGAATAAGAAACTTGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32446 FBgn0052446 FBtr0078426 1 1 1 83 3L 21634395 21634413 ATTCAAGGTGGAGATGACC 58 21634460 21635089 ACTTTCTCGACCTTATCGC 59 NA Nonspecific Drosophila melanogaster 50 CG32441 FBgn0052441 FBtr0078375,FBtr0078376 2 2 2 224 3L 21568000 21568333 GACTTGCTGAAGAAACTGG 58 21568521 21568539 CTGGGTGCACTCTATAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 capaR FBgn0037100 FBtr0078379 3 1 1 80 3L 21552986 21553083 TTCATTCTGTTCACGTCAG 57 21552924 21552942 TTATCAGCACCCTATTTGC 57 NA Drosophila melanogaster 50 Hr78 FBgn0015239 FBtr0078392,FBtr0078390,FBtr0078389 1 3 4 91 3L 21488964 21489534 CATGCGAAGTGATTCTGTG 59 21488891 21488909 CAGAAGTGGATGAGCTACC 59 NA Drosophila melanogaster 50 CG33288 FBgn0053288 FBtr0078347 3 1 1 110 3L 21423143 21423161 TTTATGACAGTCCAAGCGG 59 21423296 21423314 GTCTGCCTCTAGTTCTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 Cpr78Cb FBgn0037068 FBtr0078337 2 1 1 68 3L 21288921 21288939 CCTTCAAGACCAGTAATGG 57 21288970 21288989 TATAGATGCCAATGGTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 park FBgn0041100 FBtr0078318,FBtr0078319 2 2 2 129 3L 21189207 21189300 CGATGAAGAAAGAGTCCGT 59 21189096 21189115 ATCACGATGGACAGTAAAGG 59 NA Drosophila melanogaster 50 CG10587 FBgn0037039 FBtr0078333 2 1 1 60 3L 20955221 20955242 CCATATTACGGCTAAAGAAACC 59 20955182 20955200 TTGCACAATATCAGCTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HLH106 FBgn0015234 FBtr0074873,FBtr0074875,FBtr0074874 1 3 3 102 3L 19790266 19790285 GTCTTCACGTACGATCTGAG 59 19790347 19790437 CTCGATATTGCTTAATGACGTG 59 NA Drosophila melanogaster 50 CG8765 FBgn0036900 FBtr0089598,FBtr0089597 2 2 2 123 3L 19678984 19679068 AAAGAAGTCGGTGAAACAG 57 19678879 19678897 ATTATAGTGCTTCCAACGC 57 NA Drosophila melanogaster 50 Chd3 FBgn0023395 FBtr0074998 1 1 1 60 3L 19441039 19441058 CTACGGTCCAGTAATAAGGG 58 19441080 19441099 TATTCAGGTCTATTGTGGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cat FBgn0000261 FBtr0075058 2 1 1 106 3L 18820344 18820459 AACTACTTTGCTGAGGTGG 59 18820529 18820547 GAGTAGGAGAACAGACGAC 58 NA Drosophila melanogaster 50 Nufip FBgn0036812 FBtr0075088 1 1 1 99 3L 18740913 18740931 AAGAAAGTTTGGTCCGAGG 59 18740775 18740793 CCTTGGCTAATCTAGCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18233 FBgn0036795 FBtr0075103 2 1 1 101 3L 18599110 18599128 GGACTTCTTCAAAGGACAG 57 18599277 18599295 AAGTGATCGCTTAAACTCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG9674 FBgn0036663 FBtr0075341,FBtr0075344 2 2 4 88 3L 16785600 16785618 TAAGAATGCCGGATTACCC 59 16784780 16785548 GAACAATCACACGTGATCG 59 NA Drosophila melanogaster 50 CG32164 FBgn0042177 FBtr0075313 1 1 1 75 3L 16597755 16597773 CAGAAACTACTACAGCCCA 58 16597811 16597889 AATCATCGTCTTCCTTGAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13055 FBgn0036583 FBtr0075482 1 1 1 158 3L 16245038 16245056 AACAACAAACTGGATGTGG 58 16244898 16244916 GTGAACTAGGTCATCCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf4 FBgn0010280 FBtr0114589 1 1 5 188 3L 16107926 16108769 ACCAAGACCATCAATCAGG 59 16108918 16109140 TAAAGTTATCGATGGACTCTGC 59 NA Drosophila melanogaster 50 CG5222 FBgn0036570 FBtr0075495 3 1 1 103 3L 16097460 16097479 ATAACCATGTGTTCTCCGAG 59 16097319 16097337 GATAAAGTGAACAGCGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 mRpS31 FBgn0036557 FBtr0075519 3 1 1 141 3L 15998823 15998841 ACAGAGTCTGAGCTATTGG 58 15998945 15999030 TGCCCACGATAATATCACTC 59 NA Drosophila melanogaster 50 CG7304 FBgn0036527 FBtr0075577,FBtr0075576 3 2 2 60 3L 15673576 15673595 GAAAGACGAGGAATGTACGA 59 15673618 15673636 TCGCTCTAGATAAAGGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13455 FBgn0036498 FBtr0075544 1 1 1 96 3L 15490337 15490355 CTGTACGACTCCATCAGTC 59 15490483 15490501 TTTCCCTCTTGGCTAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17177 FBgn0036440 FBtr0075710 1 1 1 60 3L 14694698 14694716 GGAAATAGATCTGTGCGAG 57 14694656 14694677 CTTTAACTGCTTATCACTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bbg FBgn0036425 FBtr0075726 1 1 1 60 3L 14501183 14501202 GTATAATTGTCGGTGTGGAG 58 14501142 14501160 AAGTTGATAATTGGCTGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34244 FBgn0085273 FBtr0112438 3 1 1 61 3L 14228587 14228605 CAATAGCCTGAGCATTGAC 58 14228544 14228563 AATTATCCTCGGTCACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6833 FBgn0036405 FBtr0075774 3 1 1 62 3L 14045081 14045100 CATGACATTCGTGATACGTC 58 14045123 14045143 CGTGTGGGTATTAGAGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 blue FBgn0041161 FBtr0075781 2 1 1 82 3L 14040887 14040963 GATGACTAATGTGCGTTCC 58 14040823 14040842 CATACTGTTCGATAACGGTG 58 NA Drosophila melanogaster 50 CG10743 FBgn0036376 FBtr0075814,FBtr0075813 3 2 2 103 3L 13507881 13507899 CTGCTATGAGGACAATTGC 58 13508025 13508045 GCATCTTTAGGTTTAGCTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10960 FBgn0036316 FBtr0075942,FBtr0075943,FBtr0075941 1 3 3 133 3L 12820168 12820186 GTATCCTGTTCGTCTATGC 57 12819719 12820071 TTTGGAAACCAAGTAGGTG 57 NA Drosophila melanogaster 50 CG14131 FBgn0036205 FBtr0076028 3 1 1 98 3L 11771330 11771348 GATACTGCTGTCCATGGAG 59 11771409 11771541 ACTGATGAAGTTGTTCCCTG 59 NA Drosophila melanogaster 50 CG12289 FBgn0036160 FBtr0076178,FBtr0076179 1 2 2 60 3L 11451067 11451085 CCACAATTGTCCAAGATCG 58 11451025 11451044 AATGACTTGTCGCAATACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18490 FBgn0036149 FBtr0076167,FBtr0076166 3 2 2 171 3L 11219659 11219744 GATGCGTCAGTAAACAAGC 59 11219876 11219897 CGAAAGGTATTTCATCAACGTC 59 NA Drosophila melanogaster 50 CG6216 FBgn0036139 FBtr0076220,FBtr0076221 3 2 2 103 3L 11143173 11143247 AAATGTGTTGTGGCAAGAC 59 11143088 11143106 CTTGTTGGAGGACAAAGGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG32073 FBgn0052073 FBtr0076230 2 1 1 95 3L 11100392 11100410 GTATTCCGTTGATTGCACC 59 11100315 11100333 GATCCACTGCTACTTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NijA FBgn0036101 FBtr0089569,FBtr0089570,FBtr0089571 1 3 3 148 3L 10687816 10688131 TATTCCAGATTGCTGTGGG 59 10687686 10687707 GGCTGATATTAGAACATTGACC 58 NA Drosophila melanogaster 50 CG14153 FBgn0036094 FBtr0076259 1 1 1 60 3L 10636860 10636879 AATCCAACTATGCCAATCCA 59 10636902 10636920 TTCACTATGATAGGCGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 E(z) FBgn0000629 FBtr0076279 2 1 1 83 3L 10630672 10630752 GGATAAGAAACTGGGACGA 58 10630607 10630625 GATCGTAGGGTTTAGCCTG 59 NA Drosophila melanogaster 50 SH3PX1 FBgn0040475 FBtr0076413 2 1 1 86 3L 9704600 9704620 GGATCGACTTCACATCTACAG 59 9704054 9704072 TCCTTTCGCTTCTGTATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6767 FBgn0036030 FBtr0076416,FBtr0076415 3 2 2 147 3L 9677737 9677755 TGTATGCTATTCTGACGCA 58 9677545 9677626 GAGACATCAATGCACTGGA 59 NA Drosophila melanogaster 50 CG8336 FBgn0036020 FBtr0076384,FBtr0076386,FBtr0076385 3 3 3 127 3L 9624224 9624296 CTCGACAAGTTCACAGGAG 59 9624387 9624405 TAGTATCGATTCGCCTTGC 59 NA Drosophila melanogaster 50 PGRP-LA FBgn0035975 FBtr0076432,FBtr0076435 2 2 4 181 3L 9329862 9329880 GATAAGTCGCCATCTAGGC 59 9330025 9330095 AGATTCGGAAACGTTTGGT 59 NA Drosophila melanogaster 50 Mcm7 FBgn0020633 FBtr0076585 1 1 1 107 3L 8885793 8885811 CATTGTGGTCTCTGGAGTG 59 8885882 8885967 ATACAGATGATGCGGTGAG 59 NA Drosophila melanogaster 50 CG32022 FBgn0052022 FBtr0076597 3 1 1 62 3L 8713836 8713854 AGCGTAAAGTATCAGAGGC 59 8713792 8713810 GCATGAAGTTCTCCATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32351 FBgn0052351 FBtr0076639 3 1 1 105 3L 8614807 8614881 GATGCATATTGATGCCACC 59 8614949 8614968 AATAAACTCGATGAGTGTCC 57 NA DesignRelaxed Drosophila melanogaster 50 CG15829 FBgn0035743 FBtr0076913 1 1 1 68 3L 7122203 7122221 CTACGGCTACTACAAGCAG 59 7122253 7122271 TTCTTCTCCTCATCTTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10103 FBgn0035715 FBtr0076949 1 1 1 108 3L 6748214 6748528 TTTATCGATCGTGAAGCGA 59 6747859 6747878 GATTAATGGAGGTGTAACGC 58 NA Drosophila melanogaster 50 CG32245 FBgn0052245 FBtr0073312 3 1 3 91 3L 4563894 4578763 AAATACGTAGACTTGCGGA 58 4578818 4578836 CATTATCACAAGAGCCACG 58 NA Drosophila melanogaster 50 CG11357 FBgn0035558 FBtr0073310,FBtr0113143,FBtr0113142 3 3 3 196 3L 4551753 4551771 AGTGGTTCAACGAGAAGTG 59 4551929 4552113 CCATTTGGAACGATATGAACG 59 NA Drosophila melanogaster 50 CG1268 FBgn0035521 FBtr0113137,FBtr0073230,FBtr0113136 1 3 3 97 3L 4262902 4262920 CTCACCAGAATCTGATCCG 59 4262980 4262999 GATCAAGGGATTCATTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0110922,FBtr0073132,FBtr0073135,FBtr0110924,FBtr0073131,FBtr0073134,FBtr0110923,FBtr0110920,FBtr0110925,FBtr0073133,FBtr0110921 2 11 11 118 3L 3552857 3578300 CAGATTAACAATTTCCCGCG 59 3578378 3578399 CGTTGTATGGAACTTTGTTACC 59 NA Drosophila melanogaster 50 CG12082 FBgn0035402 FBtr0073114 1 1 1 159 3L 3147627 3147645 ATAAGAAGCTGCCCTATCC 58 3147425 3147443 TTATCTGCGTACTTCGACG 59 NA DesignNoJunction Drosophila melanogaster 50 msn FBgn0010909 FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956 3 5 5 104 3L 2556720 2556801 AGCAATAGAGATACGTTCCG 59 2556635 2556654 AATACTTTGTCGTTTCGCTC 58 NA Drosophila melanogaster 50 CG13802 FBgn0035330 FBtr0113127,FBtr0072886 3 2 2 60 3L 2299244 2299264 CCTTCTTTCTGCAATGTTACC 59 2299774 2299793 TTAATAAGCGCCAAGATGTC 58 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG8960 FBgn0035315 FBtr0072872,FBtr0072871 2 2 2 245 3L 2197630 2197648 TTCTGCATCATCGAGAACC 59 2197857 2197875 ATTCAGCTTGACTTCAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 zormin FBgn0052311 FBtr0110858,FBtr0110856 1 2 4 134 3L 2125346 2125364 ATGTTAGCAGGGAGATCAG 58 2124605 2125249 ATTTGGTTCCGTATTGAGAG 57 NA Drosophila melanogaster 50 sls FBgn0086906 FBtr0072849 1 1 2 80 3L 2046155 2046290 TATTTGAACGTCCTGGACC 59 2046093 2046111 CGTCAGGAGTATGAATCGG 59 NA Drosophila melanogaster 50 dre4 FBgn0002183 FBtr0072864,FBtr0072865 3 2 2 83 3L 1875341 1875359 ATCGCTAGTGTCAATGGAC 59 1875208 1875295 TGTTTGACTTTCCTATCCGA 58 NA Drosophila melanogaster 50 CG33791 FBgn0035240 FBtr0091792,FBtr0091794,FBtr0091795,FBtr0091793 1 4 4 125 3L 1606787 1606805 AAGTTGATCAAGGAGGGAG 58 1606891 1606971 CCAAGAGGAATACTTTATGGTC 58 NA Nonspecific Drosophila melanogaster 50 CG7852 FBgn0035229 FBtr0072735,FBtr0072737,FBtr0072736 1 3 3 81 3L 1539065 1539083 AGCATCACGCTGATATGTC 59 1539125 1539209 GTCGAGGAAGACATCTATACAG 59 NA Drosophila melanogaster 50 scf FBgn0025682 FBtr0089942,FBtr0089940,FBtr0089941 2 3 3 60 3L 1299622 1299641 ATGGTTATTTGAACGAGGAG 57 1299664 1299682 GAATGATCGAAGTCATGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13908 FBgn0035178 FBtr0072618,FBtr0113121 2 2 2 60 3L 990114 990132 ACATCCACCAGTATCTGTC 58 990155 990174 TTGGAGTTGTTCAGAATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mth FBgn0023000 FBtr0072571,FBtr0072570 2 2 2 80 3L 344411 344429 GGACATTCAGAACTTTGCG 59 344284 344369 CGTAGGAAGAAGGTGTAAGTC 59 NA Drosophila melanogaster 50 Ptpmeg FBgn0035133 FBtr0072545,FBtr0072542,FBtr0072544,FBtr0072543 2 4 4 80 3L 354437 354510 ATATCACCATATGACTGCACC 59 354552 354570 CATGTTTACGTAGTTGGCG 59 NA Drosophila melanogaster 50 CG7047 FBgn0035103 FBtr0072535,FBtr0072534,FBtr0072536 1 3 3 135 3L 177250 177268 ATAAAGTGCAGAGTGTCCC 59 177067 177152 AATACTCGATGGTCTCAGTG 58 NA Drosophila melanogaster 50 p130CAS FBgn0035101 FBtr0113120,FBtr0072474 2 2 3 102 3L 168759 168777 CAAACTCAAATTCGGGAGG 58 168843 172071 GGTGTGATTACCTTTGTCG 58 NA Drosophila melanogaster 50 CR30082 FBgn0050082 FBtr0087321 3 1 1 85 2R 11573082 11573101 TACATTCTTCGGTGGAAGAC 59 11572862 11573035 GTACTTGGCATTTGTAAACG 57 NA DesignRelaxed Drosophila melanogaster 50 CG30430 FBgn0050430 FBtr0072448 3 1 1 66 2R 21017163 21017181 CTACTACCCTTGCTGTAGC 59 21017211 21017229 ACTATAGAATCCGCATCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3894 FBgn0035059 FBtr0072373,FBtr0072372 2 2 2 135 2R 20650966 20650984 TCGCTTTCATCCATACCAC 59 20651083 20651101 CTCCACCAAGAAGATGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13581 FBgn0035014 FBtr0072300 1 1 1 64 2R 20394819 20394837 TGTTATACTGTGACCAGCC 58 20394865 20394883 GACAGATGGTACAGGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SerT FBgn0010414 FBtr0072362 1 1 1 122 2R 20294900 20294974 AGTTCTTTGAGCGAAAGGT 59 20294796 20294814 ACAGGGAGAAGTAGACCAG 59 NA Drosophila melanogaster 50 CG11406 FBgn0034990 FBtr0100169,FBtr0072276 1 2 2 153 2R 20090339 20093348 TATCCATTGGATCGTAGCA 57 20090044 20090062 CATATCGCAGCGTATTCAG 58 NA Drosophila melanogaster 50 yki FBgn0034970 FBtr0072183,FBtr0072184 2 2 3 156 2R 19953829 19954697 TAAAGCAGAATGAATCTGGG 57 19953609 19953627 TACCATTCCAAATCGTCAG 57 NA Drosophila melanogaster 50 TM4SF FBgn0020372 FBtr0100255,FBtr0072130 1 2 2 139 2R 19767864 19767958 TAGCCATATTCCAGAGCCT 59 19768061 19768079 CTTGTCCTGTATGGTCAGG 59 NA InUTR Drosophila melanogaster 50 retn FBgn0004795 FBtr0072072,FBtr0072073 3 2 2 98 2R 19538521 19538539 TATCAACAAGAAGCTGTGG 57 19538601 19538969 TACTTCATGTATTGGGTGC 57 NA Drosophila melanogaster 50 CG13559 FBgn0034870 FBtr0072057 1 1 1 60 2R 19391078 19391096 ATTGGATGCTGGCTAATCC 59 19391120 19391138 GACACGAGTGATGGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13557 FBgn0034867 FBtr0072019 2 1 1 90 2R 19363433 19363451 CCAGATTGGTGTATCCCTG 59 19363361 19363379 TTGGTCTCAATCATTCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30411 FBgn0050411 FBtr0072016 3 1 1 80 2R 19303765 19303783 GAAGATGTTTACCTGACGC 58 19303890 19303908 AATCCGGTAGTTATCGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF2B-delta FBgn0034858 FBtr0072014,FBtr0072015,FBtr0072013 1 3 3 76 2R 19275710 19275728 CAAGAACCAACTGACACAG 58 19275824 19275842 TATCGATGAAGTGGACGAG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG3732 FBgn0034750 FBtr0071936 2 1 1 76 2R 18527053 18527071 CTAAGTTCTCGGATGTGGA 58 18526939 18526957 ATCCTTGTACTCTACCACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11206 FBgn0034720 FBtr0071846,FBtr0113106,FBtr0071847 2 3 4 145 2R 18222380 18222458 GAAAGGATCTCAGAGCTCC 59 18222253 18222271 TGGTTGCGTATATTCCTCC 59 NA Drosophila melanogaster 50 CG3074 FBgn0034709 FBtr0071785,FBtr0071784 1 2 2 153 2R 18079061 18079174 CATCTCCAACACTCTATGCT 59 18078927 18078945 CGTGGTATTGTACTTGCTG 58 NA Drosophila melanogaster 50 Tango11 FBgn0050404 FBtr0071746 2 1 2 207 2R 17606590 17606608 ATTCCGTTGAATCGGACTC 59 17605017 17605035 TTGATCTCGATGTTCAGCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG30403 FBgn0050403 FBtr0114523 2 1 1 60 2R 17598117 17598138 CTACAGATTCGACTTACCAGAC 59 17598078 17598096 GATCTGGCTTAATCTCCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10505 FBgn0034612 FBtr0071619 3 1 1 80 2R 17177151 17177171 ATCTTTAAGGTCTACGGATGG 58 17177020 17177110 CTGGAAGGAATGAATAGCCA 59 NA Drosophila melanogaster 50 shg FBgn0003391 FBtr0071546 1 1 1 60 2R 16938716 16938737 CGAGACGATCATTAATTACGAG 58 16938677 16938695 CAGATCATAGTCCGTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13443 FBgn0034548 FBtr0086239 3 1 1 60 2R 16661665 16661684 ATGCAATTAATGCCTCTGGA 59 16661705 16661725 TCGAGTATAAATTCTCCCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bl FBgn0015907 FBtr0086221,FBtr0086220 2 2 4 90 2R 16483146 16483164 TTCGCATACTGATTCCGAG 59 16483310 16485063 GTGGCTTTATACTGAGTCCTC 59 NA Drosophila melanogaster 50 CG13870 FBgn0034506 FBtr0086287,FBtr0086288 1 2 2 278 2R 16232030 16232160 ATCTTCCTTTCAAATGCCC 57 16232402 16232420 ATTCGGATAACTGGTGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG15128 FBgn0034467 FBtr0086481 2 1 1 109 2R 15574057 15574163 CAAGAAGGTTCAGCAATTGG 59 15573967 15573985 ACACCTCGTTAAGGAACTC 58 NA Drosophila melanogaster 50 sm FBgn0003435 FBtr0086492,FBtr0100233,FBtr0100232 1 3 7 106 2R 15488466 15488484 AGTCAAATGACGACCTACG 59 15461823 15488397 CAAGACATCAACTGTGATGG 58 NA Drosophila melanogaster 50 Elongin-C FBgn0023211 FBtr0086540 3 1 2 228 2R 15333532 15333550 ACGAATTTGTCGTCAAACG 59 15332774 15332792 AGTTCTAATGCGATCTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 Elongin-C FBgn0023211 FBtr0086540 1 1 2 153 2R 15333532 15333550 ACGAATTTGTCGTCAAACG 59 15332849 15332867 GTGAAGTACATGCAGACCT 59 NA DesignNoJunction Drosophila melanogaster 50 Fak56D FBgn0020440 FBtr0114606 2 1 5 105 2R 15323046 15323108 TTATTTCCCAGGAATCTCGT 58 15322960 15322978 TTCCTTTGGTAAAGTGCAC 58 NA Drosophila melanogaster 50 endoB FBgn0034433 FBtr0086558,FBtr0086559 2 2 4 81 2R 15196010 15196085 CCAATGAGGTGATCTTCGT 59 15195947 15195965 AGACCCTTCAATAGACCCT 59 NA Drosophila melanogaster 50 CG14500 FBgn0034318 FBtr0086752 3 1 1 60 2R 14076666 14076684 CATTGTCGATCCCTTAACG 58 14076707 14076726 TGACATTGAATTCCGTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nopo FBgn0034314 FBtr0086750 1 1 1 86 2R 14069011 14069029 AGGAGATCGAACTAAAGCG 59 14069139 14069212 AAGCTTGTAGCTTCTCCTG 59 NA Drosophila melanogaster 50 Sema-1b FBgn0016059 FBtr0086890,FBtr0086891 3 2 2 107 2R 13565405 13565423 ACAAGACAAAGTCCTAGCC 59 13564084 13565334 TTGTAGATGACGTCCTTGG 58 NA Drosophila melanogaster 50 CG4847 FBgn0034229 FBtr0086937,FBtr0086936,FBtr0086934,FBtr0086933,FBtr0086935 3 5 5 68 2R 13400456 13400474 AATTGACCGGTCTGAAGAG 59 13400570 13400589 GGTTGACCAACTTCAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 EDTP FBgn0027506 FBtr0086958,FBtr0086959 1 2 2 80 2R 13320625 13320704 TCCGAAGAGATCTAGAACCA 59 13320564 13320583 CCATTGGACGATGTAGACTC 59 NA Drosophila melanogaster 50 Ark FBgn0024252 FBtr0086968,FBtr0086967 2 2 2 93 2R 12909214 12909232 CAGGATGTACATCGAGCAG 59 12909289 12909428 TAGCTTCAGATACGGTTGC 59 NA Drosophila melanogaster 50 Dek FBgn0026533 FBtr0100437,FBtr0100438,FBtr0100436 3 3 4 148 2R 12747152 12747173 CGGATATGTCAAAGAGATTCTG 58 12747282 12747364 TCGCAATTAACGCTTTCAC 59 NA Drosophila melanogaster 50 CG15615 FBgn0034159 FBtr0087077 3 1 1 91 2R 12681314 12681332 TGCCAGAGAAGAAATTGGA 58 12681182 12681262 CTTCCATTCCAATTTATCGGTC 59 NA Drosophila melanogaster 50 CG5522 FBgn0034158 FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026 2 6 6 88 2R 12676160 12676302 CTACACTATAGCAGCCTCG 59 12676354 12676372 AAATAACCGCATCCAACTG 58 NA Drosophila melanogaster 50 CG8306 FBgn0034142 FBtr0087120 1 1 1 137 2R 12478090 12478172 TTCGTCCGAGTATGATCAC 58 12477971 12477989 TAATGATGCTGGGATCCAG 58 NA Drosophila melanogaster 50 CG4409 FBgn0034128 FBtr0113085 3 1 1 113 2R 12331523 12331541 CTGTACGCCCTATTCTTCG 59 12331618 12332182 CATTGAGTTCTGCAAACCG 59 NA Drosophila melanogaster 50 CG15709 FBgn0034100 FBtr0087186 1 1 1 61 2R 12141949 12141967 GCGATTCCAGTTATGTGGA 59 12141744 12141762 AATTGATTTGCAGTAGCGC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG8445 FBgn0034088 FBtr0087246,FBtr0087245 2 2 2 211 2R 12083400 12083418 AAATATGAACGCTGCTGGA 59 12083148 12083225 CCTGTACATCGTGACATCC 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG8389 FBgn0034063 FBtr0087204,FBtr0087205 1 2 2 60 2R 11900093 11900111 TCCATGTCTTCCCTATCAC 58 11900191 11900211 GGTTTAGTGGTTTCAAGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Pcf11 FBgn0022063 FBtr0087458 3 1 1 116 2R 10756534 10757568 TATTACATCAGCCAGGTGG 58 10756436 10756454 GTTGACTATGCACTGTCCA 59 NA Drosophila melanogaster 50 CG10131 FBgn0033949 FBtr0087499 1 1 1 61 2R 10517518 10517536 GTATGACATCCTGGAGAGC 59 10517561 10517579 GATGCAAATCCTTGTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30077 FBgn0050077 FBtr0087497 2 1 1 83 2R 10489160 10489178 CACTGCCCTAAAGGATCTC 59 10489224 10489243 TCTAGGGTCTGGTTAATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8617 FBgn0033925 FBtr0087561 1 1 1 66 2R 10243737 10243755 GATTTGAGCATCATGAGCG 59 10243689 10243707 TCATTGAAGCTCATTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13349 FBgn0033886 FBtr0087611,FBtr0114495,FBtr0114494,FBtr0087610,FBtr0114493 3 5 5 92 2R 9847383 9847401 GACGATCTCATCGTCTTCC 59 9847309 9847329 CGATGACTTGAACTTAAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shot FBgn0013733 FBtr0087620,FBtr0087618 2 2 6 145 2R 9770040 9788950 GAACTAGATCAAGCAGTATTCG 58 9769916 9769935 TTAATCTGGTTGCGTAACTC 57 NA Drosophila melanogaster 50 CG6197 FBgn0033859 FBtr0087623 3 1 1 179 2R 9483353 9483434 CATTGCTCACAGGTTTGTG 59 9483577 9483595 GTTTGTGCTCAGGAATTGG 59 NA Drosophila melanogaster 50 cid FBgn0040477 FBtr0087667 2 1 1 72 2R 9373778 9373796 TCCTACATGCTAACCAAGC 59 9373832 9373850 AGATGTAGGCCATCAATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30062 FBgn0050062 FBtr0087706 3 1 1 64 2R 9333551 9333569 ACGGACTGTTCCAAATCAG 59 9333505 9333523 TGCATAGTATTCCGTTCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dp FBgn0011763 FBtr0087740,FBtr0087741 1 2 2 81 2R 9113248 9113323 AAACAGAAGCAGGTACCAC 59 9113368 9113386 AAGGGCAAGTCGTAATGAC 59 NA Drosophila melanogaster 50 CG4630 FBgn0033809 FBtr0087765 3 1 1 96 2R 9103760 9104122 ATTCGTTACACTAGGTGCC 59 9103682 9103701 TGTGAACGTGTAGATGACTG 59 NA Drosophila melanogaster 50 CG3884 FBgn0033786 FBtr0087799 3 1 2 61 2R 8838237 8838255 GGATACGAATTCCAGAAGC 57 8838194 8838215 TTCATCCATACATATCCGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nmda1 FBgn0013305 FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876 3 6 6 93 2R 8765642 8765662 GACGAACTTCATATTCTTGGG 58 8765511 8765587 CATGAGAACCTCTTTCGGA 58 NA Drosophila melanogaster 50 SIP2 FBgn0061197 FBtr0089670,FBtr0089669,FBtr0089671,FBtr0089668 3 4 4 97 2R 8191550 8191640 CAGATAAGCGATCTAAGGGAG 59 8191473 8191491 ATCTTGGACACTTCCTTGC 59 NA Drosophila melanogaster 50 CG8964 FBgn0033674 FBtr0088027 3 1 1 133 2R 7911661 7911767 AAATGGATGAGGGAAACCC 59 7911546 7911564 ATTTGACCCTGGCTATTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13190 FBgn0033662 FBtr0088034 2 1 1 130 2R 7774236 7774255 CCAGCACAATCAATCTTCTG 59 7774347 7774435 CAGACCCATTCAATGTTGTG 59 NA Drosophila melanogaster 50 Damm FBgn0033659 FBtr0088061 2 1 1 281 2R 7753255 7753273 AATCCAACCTTATCTGGCA 58 7752914 7753010 AACTTGTTTCGAACCTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG9003 FBgn0033639 FBtr0113069 1 1 4 98 2R 7532456 7538327 GATTCGATCAAACATTCCTAGG 58 7532379 7532397 CATCCAGGTAGGAGAAGAC 58 NA Drosophila melanogaster 50 CG13215 FBgn0033592 FBtr0088192 3 1 1 70 2R 7127394 7127412 GATATTACCGGAGAGCCAG 59 7127342 7127360 CAGATGAAATAGTCGCCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf5 FBgn0010356 FBtr0088240 3 1 1 60 2R 6765181 6765202 GGCTTGGATAACAATCTAACTC 58 6765142 6765160 TGCTGATATAGTCTTCGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 3 12 12 93 2R 6499952 6500255 GCATATGGACATGTATAACTCG 58 6500309 6500327 ATTCGTATAGTGCGGTTCC 59 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 1 9 9 149 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349137 6349157 GACAGCATCGAATACAAACTG 59 NA Drosophila melanogaster 50 CG11825 FBgn0033519 FBtr0088316 2 1 1 92 2R 6308449 6308467 TCAGGCAAACAAGTTATCC 57 6308375 6308393 TAGGCTCCAATCAAACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1814 FBgn0033426 FBtr0088523,FBtr0088521,FBtr0088522 3 3 3 81 2R 5468497 5468576 AATCTACTACGAGGGTTCG 58 5468620 5468639 ATGATCTCCGAAATAGAGCA 58 NA Drosophila melanogaster 50 CG8734 FBgn0033315 FBtr0088728 2 1 1 60 2R 4515044 4515063 TTTCTTCACAGCCATAACTG 58 4515003 4515021 GGAGCTGAGTATCTTTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2127 FBgn0033286 FBtr0088765 3 1 2 85 2R 4257390 4257408 TCAGAAATGTCGTTCCCTC 59 4257323 4257343 ACCAATCGACCTTGAATAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18449 FBgn0033285 FBtr0089732 2 1 1 76 2R 4254893 4254911 TTTATCTCCACCCAAAGCA 58 4254835 4254853 TAGTATCCATCAAACGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8708 FBgn0033271 FBtr0088809 3 1 2 65 2R 4047560 4047580 CTTTACTACAAGACGGATGAC 58 4047462 4047481 TACGTAGTGAAAGGAGATGG 58 NA DesignNoJunction Drosophila melanogaster 50 Nup44A FBgn0033247 FBtr0088862,FBtr0088860,FBtr0088861 1 3 3 75 2R 3878040 3878058 CACTTACATGGTCACCCAG 59 3878192 3878211 GAATAAGAAGACCTTGCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11198 FBgn0033246 FBtr0088871,FBtr0113053,FBtr0088872 3 3 4 199 2R 3872618 3872636 AGCGAAACAAATGAGTCCA 59 3870501 3872392 GACATACTCGGCCTTAACC 59 NA Drosophila melanogaster 50 p47 FBgn0033179 FBtr0088997 1 1 1 100 2R 3352768 3352847 TTTCATACAAACTGCACGC 59 3352686 3352704 TCTCGATGGTGGAATTGTC 59 NA Nonspecific Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111084 2 1 60 158 2R 3249225 3249243 AAGGACGATTGGTCATCAC 59 3236470 3241079 ACTTGTACCATCTAAAGGCG 59 NA Drosophila melanogaster 50 Rab2 FBgn0014009 FBtr0086124 1 1 1 60 2R 2585036 2585055 GATCAAGCTTCAAATCTGGG 58 2585078 2585569 AGAGCGTGTGATAGATCTG 58 NA DesignRelaxed Drosophila melanogaster 50 jing FBgn0086655 FBtr0114364,FBtr0114363,FBtr0086104,FBtr0114365 2 4 5 186 2R 2506074 2506093 ATGTTTGACTTCTTCGACAC 58 2506242 2506321 ACTCGTCGGAAATGATCTC 59 NA Drosophila melanogaster 50 Nipped-A FBgn0053554 FBtr0113467 3 1 2 81 2R 1082459 1082480 GGGATCGATTTAGTAGAAACTC 58 1081195 1082417 TGGTATGTGATCCCATTCC 58 NA Drosophila melanogaster 50 Spf45 FBgn0086683 FBtr0111239,FBtr0111240 3 2 3 160 2L 22960010 22960028 TGACGAAGAATTGGAACCC 59 22959807 22959888 CCACTACAGCTTTAATTGCAC 59 NA Drosophila melanogaster 50 CG34173 FBgn0085202 FBtr0112364 3 1 1 82 2L 22054066 22054085 ATTAGAATTGAGGAGCGCTC 59 22054003 22054021 ATAAAGCGGATAAGGGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41433 FBgn0084000 FBtr0111263 2 1 1 134 2L 22028939 22028957 GTCTCATTAGTCTTTGCCG 58 22029055 22035396 TATGAGTGGTATACGCCAC 58 NA Drosophila melanogaster 50 CG9246 FBgn0032925 FBtr0081472 1 1 1 60 2L 21164018 21164039 AAGGAAGATACGGTAACTAAGG 59 21164060 21164078 TGTGGTACTTCTCTTCGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 del FBgn0086251 FBtr0081502 3 1 1 81 2L 21146958 21146977 TGTCGCCAAACAATATAAGG 58 21146842 21146860 TAGTCTTGTGATCTCTGGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG14401 FBgn0032900 FBtr0081430 1 1 1 134 2L 20870741 20870759 TACCAAGTACCATGAGGGA 59 20870928 20870946 CCGAGGAAGTTCATAAAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG40463 FBgn0058463 FBtr0100162 1 1 1 60 2L 20226427 20226446 TTTCGGTTTCATTGTTTCGG 59 20226469 20226487 TTCGTGATCACAGTACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10462 FBgn0032815 FBtr0100351,FBtr0100352,FBtr0081325 3 3 3 92 2L 19733222 19733240 GACAAACGTTTCCGAACTC 59 19733055 19733167 GTCTAACGAGCATATCTTGC 58 NA Drosophila melanogaster 50 CG10348 FBgn0032707 FBtr0081124 1 1 1 60 2L 18715400 18715420 GAACGTTCCTTTAGCATATCC 58 18715360 18715378 CCTTGTTGTGGATATTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4841 FBgn0032622 FBtr0080950 1 1 1 172 2L 16915348 16915431 GATTGATGCTGTGGATCGA 59 16915567 16915585 CAGTCTTGAAATGCAGCTG 59 NA Drosophila melanogaster 50 CG13272 FBgn0086673 FBtr0080914 3 1 1 209 2L 16811804 16811822 AGACTTTGGAGACGATTGG 59 16813594 16813613 GATTACTTTGACCAGTGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080898,FBtr0080903,FBtr0080900 3 3 13 98 2L 16779121 16779139 AAGGGTATTGAGGATCCCA 59 16779199 16780558 GAAGAACACCTTTGTGTTACC 59 NA Drosophila melanogaster 50 CG17912 FBgn0032600 FBtr0080893,FBtr0113041 2 2 2 175 2L 16744377 16744699 AGCGTACAGTAATGCTACC 59 16744836 16744856 GTGGATGCATAATCTTTGTGG 59 NA Drosophila melanogaster 50 CG31738 FBgn0051738 FBtr0080882,FBtr0080881 3 2 2 60 2L 16659041 16659059 CTCAAGATGGTGACTTCCT 58 16659083 16659101 TTGAGGAAACCATGACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycE FBgn0010382 FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775 3 5 5 98 2L 15729492 15729578 ATACATTTAGTCGGGAGATGG 59 15729414 15729432 AGATCACTCGGAAGAATGG 58 NA Drosophila melanogaster 50 CG15256 FBgn0028880 FBtr0080751 1 1 1 134 2L 15555022 15559594 TTGCACAAGTTGATCAACG 59 15559691 15559710 GTTAGTCATGAGGACATCCT 58 NA Drosophila melanogaster 50 yuri FBgn0045842 FBtr0100611,FBtr0080709,FBtr0100610 2 3 7 107 2L 15261796 15261814 AATCTACGACGAATCCTCG 58 15258928 15261726 AGTTGTCCGTTAATTTCCAC 58 NA Drosophila melanogaster 50 CG16863 FBgn0028931 FBtr0110942,FBtr0080536 2 2 2 60 2L 13792783 13792801 ATCACTACGATATCTGGGC 58 13792824 13792843 TTTACAATCCTTTGCTTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9008 FBgn0028540 FBtr0080577,FBtr0080576 3 2 2 157 2L 13775381 13775399 GAATCCTTGGATCGATCGA 58 13775035 13775262 CCTCGATGATAATCTGAAGGA 58 NA Drosophila melanogaster 50 kuz FBgn0015954 FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660 2 5 5 86 2L 13634171 13634249 CACCTACAGAGATTTCACTG 57 13634298 13634316 TACTTCTCGCAAATTCCAC 57 NA Drosophila melanogaster 50 CG31855 FBgn0051855 FBtr0080467 3 1 1 78 2L 13369397 13369415 CAGAATGTCAGTACGAGAC 57 13369457 13369475 ATGTTCGTTGCTCAAATGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG15479 FBgn0032493 FBtr0080481 3 1 1 60 2L 13234573 13234592 GAGCACCATCAGATCTATCG 59 13234532 13234551 CGCATTTCTCAATCTTTCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ACXE FBgn0040506 FBtr0080416 2 1 1 91 2L 12928710 12928791 TCATATCGTGGATGTGTATCTC 59 12928843 12928861 TTAGCATGGCAAACATGAC 58 NA Drosophila melanogaster 50 vir-1 FBgn0043841 FBtr0080391,FBtr0080390,FBtr0080389 3 3 4 106 2L 12407726 12409466 CTCCTTCGATGATCTCTTCC 59 12407639 12407657 TAGAATCATCAGAGTCGCC 58 NA Drosophila melanogaster 50 CG34163 FBgn0085192 FBtr0112354 3 1 1 62 2L 11988515 11988533 ACTGAAATCGGGTGTATCC 59 11988559 11988577 TTGAGTCGTTCGATTTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 esc FBgn0000588 FBtr0080325 3 1 1 227 2L 11828900 11828980 TACAAATACGACACCCACG 59 11828327 11828345 CTTAAGGTCGTACGACCAG 59 NA DesignRelaxed Drosophila melanogaster 50 sala FBgn0003313 FBtr0080237 2 1 1 60 2L 11486576 11486596 TGGAACTAATCCAGTTGAGTC 59 11486616 11486636 ATGTTCCGGATATTCATGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33129 FBgn0053129 FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172 2 4 4 117 2L 10966083 10966101 GATCAAGACCACCTGTGAC 59 10965902 10966002 TTGGTCAATGAACTTTGCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG17086 FBgn0032310 FBtr0080142 3 1 1 187 2L 10853608 10853627 TACACCTACACATTGGATGG 59 10853777 10853849 CAACTAGTGTCCGGTTCTG 59 NA Drosophila melanogaster 50 CG17098 FBgn0032276 FBtr0080103 1 1 1 60 2L 10652593 10652611 TGACTAGTGAATCACCGGA 59 10652635 10652653 TGCTGCTGATATAGACTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6138 FBgn0032268 FBtr0080098 1 1 1 61 2L 10567849 10567868 TGGTATGGAACAACAAAGAG 57 10567889 10567910 CGCTATAAGTGTAGTTTCACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7384 FBgn0032262 FBtr0080135 2 1 1 62 2L 10509504 10509522 TGCATACTCCTAGTTTCGG 58 10509245 10509263 AATCGTGCTATTCTCCACC 59 NA DesignNoJunction Drosophila melanogaster 50 SamDC FBgn0019932 FBtr0079994,FBtr0079995 3 2 2 76 2L 10340228 10340319 TTTGTGTTAAGTGAGAGCAG 58 10340358 10340376 AATGGAGTAGTCGTTCCAC 58 NA DesignRelaxed Drosophila melanogaster 50 CYLD FBgn0032210 FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069 2 5 5 80 2L 10296849 10296945 TTCTAAAGCTAAGCTCGGG 59 10296787 10296808 CACTCGGTAATGTTAACTTCTC 58 NA Drosophila melanogaster 50 bsk FBgn0000229 FBtr0080087 1 1 1 105 2L 10248598 10248616 AAATGGACTTGGATCACGA 58 10248448 10248530 GATGGCTTTAAGTCTCTGTG 58 NA Drosophila melanogaster 50 CG5708 FBgn0032196 FBtr0079956,FBtr0079955 2 2 2 81 2L 10225002 10225021 GCGTATTTCATCTAAGGTGC 59 10224875 10224964 GCTCCTAACATAGTATACCTATCAC 59 NA Drosophila melanogaster 50 CG13134 FBgn0032182 FBtr0079968 2 1 1 175 2L 10097806 10097825 GAATTTCCATCACTTCGACG 59 10096921 10096939 ATTTGCTGGCATTAACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5846 FBgn0032171 FBtr0079891 2 1 1 113 2L 9956413 9956431 AAGACCTGGATCTAAGTGC 58 9956318 9956336 TTATGGCCGTCATGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 und FBgn0025117 FBtr0079866 3 1 1 150 2L 9764623 9764641 AAATGGACACTCCATCAGC 59 9764875 9764894 CATATCGTCATGGACCAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4389 FBgn0028479 FBtr0079859,FBtr0079857,FBtr0079858 1 3 3 81 2L 9575428 9575513 GGTAAACTTCGCGTAAATCG 59 9575366 9575384 TCTTCACAAAGTCGGTGTC 59 NA Drosophila melanogaster 50 tai FBgn0041092 FBtr0079794 3 1 1 80 2L 9235196 9235214 ACAAGCGTGGAGATATGAC 59 9235257 9238970 AAATCTCACGATACGTTCGA 59 NA Drosophila melanogaster 50 CG17906 FBgn0032086 FBtr0079762 1 1 1 81 2L 8994955 8994973 GGATCTCACACTACACCAC 59 8995015 8995098 TCTGGCATGGTTAATGATAGAG 59 NA Drosophila melanogaster 50 CG31886 FBgn0032079 FBtr0113029,FBtr0079787 2 2 2 60 2L 8955036 8955054 CCAGGATGTGCTAATGGAG 59 8954994 8955015 TGGAATATCCTCAGTCAAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8451 FBgn0031998 FBtr0079637 1 1 1 82 2L 8202398 8202477 TCTGGATGAGATTCTGTTTCTG 59 8202279 8202297 CATGGAGATTAATGCCCGA 59 NA Drosophila melanogaster 50 Slob FBgn0024290 FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518 1 4 4 80 2L 7649009 7649028 TTGAGGACTTAGTCCTTTGC 59 7648880 7648969 GCTTAATTGTACTGAAACAGGG 59 NA Drosophila melanogaster 50 CG5261 FBgn0031912 FBtr0079445,FBtr0079444 1 2 2 103 2L 7428203 7428285 TAAGCTCAACGAAGGTGAC 59 7428351 7428370 CCTGGATGAGAATCTTAGCC 59 NA Drosophila melanogaster 50 CG17376 FBgn0042189 FBtr0079380 1 1 2 93 2L 6800106 6800501 CCAACTTATCCATGTGGCT 59 6800031 6800049 TGTTACACAACATGGTCCA 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG31633 FBgn0051633 FBtr0079325 1 1 1 83 2L 6655003 6655077 ATGACTTGGTTTCGAAGCA 59 6654938 6654958 CAGGTAATTGTGAATAGCTGC 59 NA Drosophila melanogaster 50 Gal FBgn0001089 FBtr0079230 1 1 1 82 2L 6004845 6005017 CAATGCACTAAGGACAATTCTG 59 6004784 6004803 CAGTGAACCCAAAGTTTGTG 59 NA Drosophila melanogaster 50 CG7236 FBgn0031730 FBtr0079133 2 1 1 92 2L 5712410 5712487 ATTAGGCTACTGAAGAACCTG 59 5712541 5712559 GAACTCGAAGACCAGATGG 59 NA Drosophila melanogaster 50 CG14013 FBgn0031720 FBtr0079121 2 1 1 60 2L 5553644 5553664 TACAATGACTACATCTCCTCG 58 5553604 5553623 TTTGATTGCCCAGATATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His3.3A FBgn0014857 FBtr0079011 3 1 2 292 2L 5055489 5055507 GGACTTCAAGACCGATCTG 59 5055899 5055920 GATAGACCTAAGTACTAAGCGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG3244 FBgn0031629 FBtr0077417 2 1 1 155 2L 4799863 4801820 AAAGATGAAAGTCACCCTGG 59 4797620 4797638 TAGGAGAACTCCTTGGGAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15431 FBgn0031602 FBtr0077459 3 1 1 196 2L 4408317 4408335 ACGACTATTTCGTGGAGAC 59 4408064 4408082 GTAGGAGCTATCGGTACTG 58 NA DesignNoJunction Drosophila melanogaster 50 Art2 FBgn0031592 FBtr0077476 2 1 1 60 2L 4278801 4278821 GATATTATAGTGTGCGACTGG 58 4278635 4278653 ACGACTCGAGCATATTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 for FBgn0000721 FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305 2 10 10 83 2L 3624270 3624291 CAGCTAATTTCCAATCTAGACG 58 3623866 3624229 GAATTCCTCGTTGATCTTTCTG 59 NA Drosophila melanogaster 50 CG33123 FBgn0053123 FBtr0077562 2 1 1 80 2L 3511135 3511153 ACTTTGGAGTTCGATGAGC 59 3511012 3511093 TTCCAAGACATCAAGATCCAG 59 NA Drosophila melanogaster 50 CG3238 FBgn0031540 FBtr0077569 1 1 1 60 2L 3468652 3468672 CCGGAGTTTGTAAAGATTCTG 58 3468612 3468630 TGGTTATGGAATCGTTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15408 FBgn0031523 FBtr0077587 2 1 1 165 2L 3333265 3333284 TAATTGCCATACCACATTCG 58 3333471 3333654 AAGGTTCCTCTGATGTTGG 59 NA Drosophila melanogaster 50 CG3488 FBgn0014906 FBtr0077576 1 1 1 128 2L 3167131 3167213 AACAGGAGGATGACATCAC 58 3167305 3167323 CAATGTGATTTAGCACCGC 59 NA Drosophila melanogaster 50 alpha4GT1 FBgn0031491 FBtr0077670 2 1 1 60 2L 3022432 3022450 TCAAAGATGGTCGTTTGTC 57 3022336 3022355 CGGAGAAAGTCTGATATGTG 57 NA DesignNoJunction Drosophila melanogaster 50 l(2)s5379 FBgn0010704 FBtr0100674,FBtr0077840,FBtr0100673 2 3 3 140 2L 2229568 2229648 TCTTAGTGGTGAAACCTGG 58 2229751 2229770 TGTGTCGTCATATCGAAGAG 59 NA Drosophila melanogaster 50 CG34172 FBgn0085201 FBtr0112363 2 1 1 121 2L 2192827 2192847 AGTTACATAAGAGACCTAGGC 58 2192664 2192682 AAATCTTATCCGCAGGTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG31935 FBgn0051935 FBtr0077916 1 1 1 112 2L 1595532 1595607 CAAACTAGCTGACATTCTAAGC 59 1595441 1595459 GAAGTTCATCCGAATGGGA 59 NA Drosophila melanogaster 50 GluRIIC FBgn0046113 FBtr0078026,FBtr0078027 1 2 2 80 2L 917374 917471 CTTTGGAAGAAAGGCTCAC 58 917513 917533 GTTTCCTATTGTTCCATACGC 59 NA Drosophila melanogaster 50 dbe FBgn0020305 FBtr0078030 2 1 1 66 2L 869441 869459 CAGAAGTGTTCCCTTCGAG 59 869393 869411 TTTGATGATGTCACACCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED15 FBgn0027592 FBtr0078062 3 1 1 83 2L 475105 475125 TGGAGACTCTACTTAAGTGTG 58 475169 475242 TTGAGGATTTACCAAACTGC 58 NA Drosophila melanogaster 50 Ent1 FBgn0031250 FBtr0078095,FBtr0078094 3 2 2 127 2L 356466 356485 CATGTCGAAGATCTATCTGC 57 356304 356377 AATAAACATCTGTCCACACG 58 NA Drosophila melanogaster 50 CG11617 FBgn0031232 FBtr0078146 3 1 1 62 2L 205204 205281 ATATGACCAGGCAGAAAGC 59 205160 205178 CATCTGTGGTAAAGATCGC 58 NA DesignRelaxed Drosophila melanogaster 50 stnB FBgn0016975 FBtr0111138,FBtr0111137 1 2 2 81 X 22386913 22387148 ACCATCAAATTTCAACCACC 58 22386851 22386869 GAAGTTCACGATTCTTGGG 58 NA Nonspecific Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077207,FBtr0077204,FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077206,FBtr0077210 1 8 8 102 X 21253981 21254060 AACACGATTGTAAAGGCTG 58 21254126 21254144 TCATTTCCAGGGTGATACG 59 NA Drosophila melanogaster 50 CG15445 FBgn0031161 FBtr0077252,FBtr0077251,FBtr0077253,FBtr0077250 2 4 4 80 X 20989730 20989748 TACGAAAGGATCAATCGCA 59 20989789 20989900 CTGATCCTCCATCTCTATTAGG 58 NA Drosophila melanogaster 50 Mgstl FBgn0025814 FBtr0077243 1 1 2 201 X 20914131 20914149 GTTGAATCCCAGACCAGAC 59 20914314 20914710 AGGTCTTCGTCTTGAAACG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11229 FBgn0031138 FBtr0077282 3 1 1 60 X 20782713 20782733 CTGGGAGACAATATACCTTGG 59 20782755 20782773 GTCTTTGTCGTCATCAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12701 FBgn0031071 FBtr0074808,FBtr0074807 1 2 2 60 X 19671582 19671601 CCACATGATAATCAAGAGCG 58 19671541 19671561 TATGCTCTTCTCGATCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14218 FBgn0031031 FBtr0074770 1 1 1 77 X 19474950 19475029 GATACCTTCTTTAGGTCGC 57 19474891 19474909 GGAGTCAACTAAGTCTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rictor FBgn0031006 FBtr0074689 3 1 1 84 X 19148554 19148643 GTTTATAGACGCCTCTCCG 59 19148488 19148507 TCAAATCATTAGGAGGCAGG 59 NA Drosophila melanogaster 50 par-6 FBgn0026192 FBtr0074456,FBtr0074455 3 2 2 94 X 17598551 17598569 GTTGCCGATTAACAACGAC 59 17598624 17598712 CATTAAGATCATCCTTTCGCTG 59 NA Drosophila melanogaster 50 xmas-1 FBgn0016080 FBtr0074405 3 1 1 273 X 17047247 17047265 GAGATCGTCCAATCACCAG 59 17046813 17046831 CTTGGTGATCAGCCTATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9676 FBgn0030773 FBtr0074364 1 1 1 163 X 16593873 16593946 GTAGCTCCAGCTAATGAGC 59 16593728 16593746 TTGGAGTTAAAGGTCAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9981 FBgn0030746 FBtr0074304 2 1 1 80 X 16297173 16297191 CTCTAAAGGAGGGATTGGA 57 16297040 16297131 TCCTTATGACAGTTACTCTGG 58 NA Drosophila melanogaster 50 U2af50 FBgn0005411 FBtr0074234 3 1 1 86 X 16251575 16251593 TTATTTCGACAGTGGTTCC 57 16251441 16251525 GTTCCTTAACCTGATCGTC 57 NA Drosophila melanogaster 50 l(1)G0136 FBgn0026666 FBtr0074084 3 1 1 129 X 15629207 15629297 GACAAGTTGGATGAGGAGG 59 15629457 15629475 TGTTAAACACGAACTCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG15747 FBgn0030474 FBtr0073766 3 1 1 62 X 13232590 13232608 AGCTGCTCCTCAATTTCAG 59 13232633 13232652 CGTTCCATTAGACTAGGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32643 FBgn0052643 FBtr0073716 1 1 1 81 X 12878837 12878855 AGCACATACGTTACTACGG 59 12878899 12878918 GTATTCTGTTGGTCAAGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tomosyn FBgn0030412 FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678 1 4 4 80 X 12546142 12546277 ACTATCACGATGAAAGATGG 57 12546317 12546338 TAGACTAGGAAGACTATGTACC 57 NA Drosophila melanogaster 50 Cyp311a1 FBgn0030367 FBtr0073640,FBtr0073639 3 2 2 109 X 11924493 11924511 CAAATTCGAGGGTCAATCG 58 11924349 11924369 CATATAGCACAAACGACATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1756 FBgn0030303 FBtr0073502 1 1 1 91 X 11368366 11368384 ACAAAGACTTTCCAGAGCC 59 11368439 11368922 ATTGCCATAGCCTATGGTG 59 NA Drosophila melanogaster 50 CG15202 FBgn0030271 FBtr0073438 2 1 1 127 X 11037218 11037300 AAATTAGCTATTGCGGTCG 58 11037391 11037409 GATGTAGTTGCTCTCGGAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG9817 FBgn0030219 FBtr0071509 1 1 1 82 X 10499259 10499375 CATAATGCCACAGAACAGC 59 10499195 10499214 CGTACTTGGAGTACATCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32700 FBgn0052700 FBtr0071374,FBtr0071373 1 2 2 204 X 9401288 9404203 GTATCCTTCAGTGGCAGTC 59 9401102 9401120 CTTCAGCTGCTTATGTCTG 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG15326 FBgn0029965 FBtr0071149 2 1 1 259 X 7759225 7759243 CATCTTATAGCACCCTCGA 58 7758713 7758731 CAGAGTGGATGTGGTAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 inx7 FBgn0027106 FBtr0071035,FBtr0071034 2 2 2 92 X 6886132 6886221 TGTGCTTCTACAGAAATGTC 57 6886059 6886078 CAATTACCGCCAATAATTCG 57 NA Drosophila melanogaster 50 CG2709 FBgn0024977 FBtr0070486 2 1 1 98 X 2620747 2620765 AATCACAAGCAGGTCAGAC 59 2620826 2620845 AGAAGGTGTGCTTCTTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HLH3B FBgn0011276 FBtr0070506 3 1 1 89 X 2575464 2575482 GTCCATATCCGATGGAGAC 59 2575393 2575411 ATGTAATCGCGAAGATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF2B-epsilon FBgn0023512 FBtr0070350,FBtr0070351 1 2 2 72 X 1814897 1814916 ATCCAACTACATTAAGAGCG 57 1814783 1814862 ATTCTCCTCGTACACATCC 58 NA DesignNoJunction Drosophila melanogaster 50 A3-3 FBgn0028550 FBtr0070244 3 1 1 238 X 1146120 1154001 GCATTTATTGATTCGATGCC 57 1145901 1145921 GCTTATCACATGTCAAACTCG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177 3 4 5 149 X 938609 938687 CAATCTGGATAAGGCTCCT 58 938800 938818 CTATCTGGCATACCTGGTC 58 NA Drosophila melanogaster 50 CG14632 FBgn0029538 FBtr0070193 3 1 2 89 X 787264 787282 TCGTATACGCGATATGCTG 59 785609 785629 CTTAACGTCTCTTCTGATTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13359 FBgn0025616 FBtr0070145 3 1 1 60 X 697379 697398 AGCGGTTAATTCCCTATGTC 59 697338 697357 CACCACACTACCATATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40766 FBgn0085773 FBtr0114223 2 1 1 147 U 8596147 8596165 TTGATCACGAGTTAGTCGG 59 8596276 8596294 AGGTTACGAAAGTGGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40973 FBgn0085549 FBtr0113962 3 1 1 77 U 6667865 6667884 AGTTTATCGTTGTCATCACC 57 6667807 6667825 ATTCCGAAGTACCGTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40068 FBgn0058068 FBtr0113783 1 1 1 60 U 1206511 1206529 GGAGATTGCCAAGAAACTG 58 1206552 1206571 GTTTGTTTCTTCAGGTGTGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40096 FBgn0058096 FBtr0113791 2 1 1 144 U 181436 181454 AACTCGAGTCAAGTTCCAG 59 181624 181642 CAAACCTCGTGTAAGGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 sv FBgn0005561 FBtr0100344,FBtr0100346,FBtr0100342,FBtr0089328,FBtr0100343,FBtr0089327,FBtr0100345 3 7 7 81 4 1127214 1128333 GAAGCACATGATGAGAACC 58 1128378 1128396 CACTGTACGTTGACATACG 58 NA Drosophila melanogaster 50 CG1732 FBgn0039915 FBtr0089972,FBtr0089971 3 2 2 88 4 653332 653964 TAATTCTGAGGTGTGGATCG 59 654015 654033 TGTAACTTCCTAACGCCAC 59 NA Drosophila melanogaster 50 Hcf FBgn0039904 FBtr0089124,FBtr0089126,FBtr0089127,FBtr0089125 3 4 4 99 4 381551 381570 GCGATAAACATCAAAGAGCT 58 381630 382947 CGTACCACTGATTAGTAACAG 57 NA Drosophila melanogaster 50 Or85e FBgn0026399 FBtr0081896 2 1 1 82 3R 4460875 4460893 ATTCGATGTGCTCTACTGC 59 4460656 4460830 AACTCAGGCCATTTACAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11318 FBgn0039818 FBtr0085739 2 1 1 85 3R 26933506 26933592 GGACTGAGAAGCAATTATCTC 58 26933441 26933459 CTAAAGGCCTTTGAATCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sima FBgn0015542 FBtr0114597,FBtr0085565 2 2 2 88 3R 25893707 25893725 AACATTGAGATTCCGTTGG 58 25893777 25894044 TCATGCATCTTGTCATCCA 58 NA Drosophila melanogaster 50 Dup99B FBgn0024381 FBtr0089608 1 1 1 60 3R 25541040 25541058 TATTTCTCCTCTTGGTCGT 57 25540998 25541016 TTTCGATCCTGGGATAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1420 FBgn0039626 FBtr0085418 1 1 1 94 3R 24863886 24863904 GGAACTTGGATCCCAACTC 59 24863754 24863828 AAACTCAGCTTCCTCTTCG 59 NA Drosophila melanogaster 50 Ssl2 FBgn0041780 FBtr0085343 3 1 1 90 3R 24857938 24857956 TTACACAGGAATTCACAGC 57 24857811 24857884 ATAATCACAAGGTTGCCCT 58 NA DesignNoJunction Drosophila melanogaster 50 woc FBgn0010328 FBtr0112857,FBtr0085178 2 2 2 82 3R 23083857 23083875 GTACTACGAGCGGTTTACC 59 23083729 23083812 TGACAATGTATTGCGAATCG 59 NA Drosophila melanogaster 50 CG6074 FBgn0039486 FBtr0085133 2 1 1 155 3R 22929095 22929312 CTACACGTACAAGGGTTCC 59 22928958 22928976 GTCCTGAAATTGTCCACCA 59 NA Drosophila melanogaster 50 spz FBgn0003495 FBtr0085146,FBtr0085143,FBtr0112834,FBtr0085139 2 4 12 112 3R 22892376 22892851 TCTTTAATAGGACGGACACG 59 22892129 22892147 GTCATTCCTCAAAGGACGA 59 NA Drosophila melanogaster 50 Tsp97E FBgn0039465 FBtr0085082 2 1 2 104 3R 22788171 22788895 CTTCAGCTTCACTGAGGTC 59 22788085 22788104 AAATAATCGTGCGGAAAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Lgr3 FBgn0039354 FBtr0084899 2 1 1 92 3R 21501836 21501902 TATTACAAGGTTGTGCTGG 57 21501958 21501976 GATAAGCATCGAAACCTCC 57 NA Drosophila melanogaster 50 CG5071 FBgn0039347 FBtr0084884,FBtr0084885 3 2 2 61 3R 21445600 21445618 CAATTTACCAGCCAGATGC 59 21445643 21445661 TTGTTGACCAATTAGCTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11910 FBgn0039332 FBtr0084846 1 1 1 60 3R 21207416 21207434 TTGCGGTTGAATCTTTCTG 58 21207374 21207394 GTTTCTTGAACAATCCCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11913 FBgn0039331 FBtr0084833 1 1 1 72 3R 21184208 21184339 CATCAAACAAAGAAGGCCC 59 21184375 21184393 TTCATGAACTCGGGATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CHKov2 FBgn0039328 FBtr0084849 2 1 1 109 3R 21156227 21156245 AGCACCAGAAATTACTCGA 58 21156086 21156156 ATAGTCGCTTATGAGAACGAG 59 NA Drosophila melanogaster 50 CG18528 FBgn0039189 FBtr0084628 3 1 1 112 3R 20185023 20185041 GATTTGACAGAGGTGGAGG 59 20184873 20184891 CAGTTGTCGTAGAGTCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 crb FBgn0086905 FBtr0111008,FBtr0084603 3 2 2 80 3R 20134439 20134754 TGCCACAACAAGATAAATGC 59 20134795 20134815 CTCATCGATATCTACTTCGCA 59 NA Drosophila melanogaster 50 Lsd-1 FBgn0039114 FBtr0084456,FBtr0084455 2 2 3 89 3R 19590398 19590480 CCCGAAATGATGTACTGGA 59 19590532 19590551 GATTTGCTTGACAGAATCGG 59 NA Drosophila melanogaster 50 CG31457 FBgn0051457 FBtr0084405 2 1 1 79 3R 18952757 18952834 GTTACTGGACGATGAACCA 59 18952696 18952714 TGTTGATCTCAACCATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6455 FBgn0019960 FBtr0084188 2 1 2 140 3R 17847984 17848135 ATCACCTACGCCAAATACG 59 17847862 17847880 ATCGATCTGATCGTTGACG 59 NA Drosophila melanogaster 50 CG31176 FBgn0051176 FBtr0084114 2 1 1 108 3R 17499107 17499125 AGAAGGTCACCTTTAGTGC 59 17498768 17499036 GCAAGATGATACTTGCTCTG 58 NA InUTR Drosophila melanogaster 50 CG16727 FBgn0038719 FBtr0083780 3 1 1 80 3R 15440007 15440083 TGTACATCTTGGTCTTCGA 57 15440127 15440145 AGCAGTAGAATACAGCCAG 58 NA Drosophila melanogaster 50 CG7685 FBgn0038619 FBtr0083630 2 1 1 128 3R 14231129 14231211 ATCCCATCAAGATTGTCAGG 59 14231302 14231320 AGTAGTTGTCGTTCAGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31360 FBgn0051360 FBtr0083480 3 1 1 65 3R 13510991 13511009 ATTGGTGCCTTCCTATTGG 59 13511035 13511056 CATAGTGAAATTCTCCAGAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7587 FBgn0038523 FBtr0083460 3 1 1 240 3R 13420311 13420329 GTCTTCTGAACGAGGAGAG 59 13420598 13420673 TAGGGTTTGTTGCATTCAG 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG3678 FBgn0038461 FBtr0083376 3 1 1 80 3R 12816556 12816636 TACGATACACAATGGGTGG 59 12816494 12816513 TATGCGGATTAAGCTTCAGG 59 NA Nonspecific Drosophila melanogaster 50 Glut3 FBgn0015230 FBtr0083340 1 1 1 60 3R 12614802 12614820 TCTCTGAGATTTCTGCGTG 59 12614843 12614862 GTGTTAGAAAGTCGATCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14903 FBgn0038446 FBtr0083303 2 1 1 60 3R 12399042 12399060 CAAGTTGTGGATCGAACAG 58 12399000 12399019 AACATAAGGTTTCAAGGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14894 FBgn0038428 FBtr0083314 2 1 1 60 3R 12268268 12268286 AGAAGCCTTAGACATTTGC 57 12268226 12268244 GTTTCCGTAGAGAACTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33331 FBgn0067628 FBtr0082998 2 1 1 62 3R 10712692 10712711 ATCTTTACTTGGCAGGAAGG 59 10712733 10712754 GATTATCAGAAGGATTGACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9288 FBgn0038182 FBtr0082829 3 1 1 60 3R 9605777 9605795 CATTCTACTTCGAGCACGA 59 9605819 9605837 TCTGTAATGGGAGCTACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9796 FBgn0038149 FBtr0082760 3 1 1 132 3R 9224682 9224805 TGTTCAATGAGCAATTCGAC 59 9224569 9224587 AAAGATGGAGTCGATGCTC 59 NA Drosophila melanogaster 50 GstD2 FBgn0010038 FBtr0082569 2 1 1 60 3R 8197799 8197818 ACAAGAAGCTACTGAACACC 59 8197841 8197859 TTGAGCTTAACAAACTCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14731 FBgn0037964 FBtr0082478 3 1 1 60 3R 7757627 7757648 ATAGACTCTATTTCCCACATGC 59 7757667 7758004 CTATCAAGTCCCTTACTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 glo FBgn0037954 FBtr0089918,FBtr0089917,FBtr0089919 1 3 3 193 3R 7644467 7644485 AACGCACAAGGAGATACTC 59 7643857 7644310 AAACTTCAATGTAGCGGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14722 FBgn0037943 FBtr0082431 2 1 1 60 3R 7568077 7568095 AACGACGAATATGACCTGG 59 7568118 7568137 TAATGTCGCCATCGTTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14713 FBgn0037928 FBtr0110809 3 1 1 60 3R 7494633 7494653 GTGATATTACAGTGGGATTGG 58 7494675 7494693 GTTGAAGGCATTGTTCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sle FBgn0037810 FBtr0082231,FBtr0082232 1 2 2 155 3R 6162872 6162952 AAAGAAAGAGCATCTTGCC 58 6163071 6163089 TTTACATCCTTCTTCAGCG 57 NA Drosophila melanogaster 50 CG6293 FBgn0037807 FBtr0082240 1 1 1 68 3R 6134931 6134950 GAACCAATACCTTTGGAGAG 57 6134818 6134836 GTATTACACGTCGGGATCC 59 NA DesignNoJunction Drosophila melanogaster 50 mtTFB2 FBgn0037778 FBtr0082173 3 1 1 143 3R 5872049 5872131 CATATACATACATCTCACCTGC 58 5872235 5872253 CTATAGGCCATCTGCTGAG 58 NA Drosophila melanogaster 50 CG11775 FBgn0037630 FBtr0081917 3 1 1 60 3R 4621856 4621876 CAGATGTACGAAATGATGAGG 58 4621948 4621969 TGTGATACTTCTCCAAATAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8202 FBgn0037622 FBtr0081914 3 1 1 89 3R 4559640 4559661 CAAGTTGACTGATCCAAATGAG 59 4559710 4559786 CTGTTTACCTCGTGTATCGT 59 NA Drosophila melanogaster 50 CG11671 FBgn0037562 FBtr0081829 2 1 1 188 3R 4113781 4113799 GATAATCAATGCCCTGGCT 59 4113950 4114026 AAATTTCCCTCCGTAAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2641 FBgn0037518 FBtr0081745 2 1 1 177 3R 3621856 3621973 GTTATGACAAGTGCAAGCC 59 3622114 3622132 TTGGTAGCGAACTCTTCAG 59 NA Drosophila melanogaster 50 sas FBgn0002306 FBtr0081571,FBtr0081570 2 2 2 156 3R 3001105 3003936 ACAAGAGCTATAAGCACGG 59 3004056 3004074 ATCTTCTCCAGACAGTTGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31554 FBgn0051554 FBtr0078637 3 1 1 151 3R 1642729 1642747 CTTAATGACTCCACTCGGG 59 1642862 1642880 GATTCGAAGTCGTACTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpII18 FBgn0003275 FBtr0078787 2 1 1 72 3R 1197774 1197792 ACATCGAGATCATAGCTCC 58 1197828 1197846 TACTTTGTGGTAATGCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32461 FBgn0052461 FBtr0078567 1 1 1 60 3L 22947881 22947900 AGGTGCTTCCAATAAGACTC 59 22947840 22947858 TCGGCTTATACCACAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11241 FBgn0037186 FBtr0078536,FBtr0113188 1 2 2 93 3L 22729073 22729549 TGTCACCCAAAGGTTAACC 59 22728998 22729016 CATACTCGTGGATCTTGGG 59 NA Drosophila melanogaster 50 CG32450 FBgn0052450 FBtr0078501 3 1 1 72 3L 22323241 22323318 AATATGTGCGGAGTATGCA 59 22323354 22323372 TTCATACGCTGTTCAAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12972 FBgn0037076 FBtr0078403 1 1 1 74 3L 21339163 21339794 AAAGGGATCAAATCCCGTC 59 21339107 21339125 ATAGTAACGGATTACGGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6289 FBgn0036970 FBtr0078172 1 1 1 95 3L 20336866 20336884 GCCTCCAAGAATGAATCTG 58 20336943 20337018 TAGTCCAGCCTCATATACG 57 NA Drosophila melanogaster 50 CG6951 FBgn0036959 FBtr0074828,FBtr0074829 3 2 2 80 3L 20237666 20238044 CTCATTATACAGGTGGGCA 58 20238088 20238106 CTTGGATGCACGATATGTG 58 NA Drosophila melanogaster 50 CG14187 FBgn0036938 FBtr0074868 2 1 1 114 3L 20105762 20105871 TTCTTGTTGGTTTCACAGC 58 20105666 20105684 GATAATCCACAGGTCGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7385 FBgn0036937 FBtr0074869 3 1 1 147 3L 20102493 20102564 ATTATTTGACCCGGAGCTG 59 20102364 20102383 GTAGGTCATCATTAGGTCGC 59 NA Drosophila melanogaster 50 CG7433 FBgn0036927 FBtr0074908,FBtr0074909 3 2 2 98 3L 19992459 19992477 GAACATAGCTCCGAAAGGA 59 19992275 19992400 TTCTGGTACCATATGAAGATGC 59 NA Drosophila melanogaster 50 Cpr76Bd FBgn0036881 FBtr0113181 3 1 1 115 3L 19530132 19530150 CCTACTTGAAGTCAGCACC 59 19530291 19530309 ATCATTCACGGCATACTCG 59 NA DesignNoJunction Drosophila melanogaster 50 fz2 FBgn0016797 FBtr0075028 2 1 3 143 3L 19153782 19163567 CAGTGACAATCAATCCTGG 58 19139512 19139530 TGTTTCCTTCCAGACACAG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 not FBgn0013717 FBtr0075109 1 1 1 99 3L 18613427 18613448 CTCAGCGATTACTTTATGTCAG 58 18613282 18613369 AATAGAACTCCTGGAAGAGAC 58 NA Drosophila melanogaster 50 rpr FBgn0011706 FBtr0075120 2 1 1 63 3L 18391232 18391250 AGTCACAGTGGAGATTCCT 59 18391187 18391205 TGACATGAAGTGTACTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32189 FBgn0052189 FBtr0075163 1 1 1 69 3L 17828096 17828114 CAACAACTGATTCGTCCAC 59 17828045 17828063 TTCTTCTTTGTGGAGGCAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Pep FBgn0004401 FBtr0075198 3 1 3 185 3L 17636609 17636627 TTTGGTAACAACATGCGAC 58 17633133 17633152 TATGGAGACTCCTTGGTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Exn FBgn0027593 FBtr0075271,FBtr0075273,FBtr0075272 2 3 3 190 3L 16983972 16984125 ATTCGTAGATGACTCAGACC 58 16984278 16984296 AATCATCCGAAATGACCAC 57 NA Drosophila melanogaster 50 CG4729 FBgn0036623 FBtr0075417,FBtr0075419,FBtr0075418 1 3 4 81 3L 16377075 16377093 ATCAAGCCCATAGACAAGC 59 16376952 16377031 ACACGAAGATAAGTTGGGAG 59 NA Drosophila melanogaster 50 comm3 FBgn0053209 FBtr0075589 3 1 1 96 3L 15625073 15625092 GATTGGAGTCATCCTTACAC 57 15607121 15625014 GTATGAGTTCTTCCACTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16959 FBgn0036481 FBtr0075655,FBtr0075656 1 2 2 237 3L 15114503 15115737 GATCAGGTCAAGAGAACCG 59 15114284 15114302 CATAGCAAGACTCCTCTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG10725 FBgn0036362 FBtr0089323 2 1 1 104 3L 13431284 13431361 GTGCATGAATGAGATAGCTG 58 13431428 13431446 GATCCAATACACTCGACCT 58 NA Drosophila melanogaster 50 CG14111 FBgn0036350 FBtr0075841 1 1 1 60 3L 13373296 13373314 CTACCAAATCACCGAACTC 57 13373337 13373356 CTCTTGGGAGACTCAATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ptp69D FBgn0014007 FBtr0075913,FBtr0075914 1 2 2 80 3L 12733375 12733459 TCATGATATCCGAAATCGGAG 59 12733498 12733519 GTATGTGATCGTATTGAACCTC 58 NA Drosophila melanogaster 50 CG6910 FBgn0036262 FBtr0076002 3 1 1 154 3L 12180066 12180084 CTGAAGCATAACAAGACCA 57 12180201 12180281 TCATAGCGATTGAAGATCAG 57 NA Nonspecific Drosophila melanogaster 50 CG11560 FBgn0036249 FBtr0075993 3 1 1 99 3L 12113597 12113615 GTGAGCAGTTCTATGAGGT 58 12113677 12113762 GATTTCAGAGTCTGCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5964 FBgn0036206 FBtr0076085 2 1 1 60 3L 11784574 11784595 CAGGATCATGGAAATTATCTGG 58 11784535 11784555 GAAGTTCTTGAAGATTGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18331 FBgn0036181 FBtr0076140 3 1 1 60 3L 11605043 11605062 ACTTGAGTCTGCCTAAACTG 59 11605002 11605020 TTTGAGCTTGACTTTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7573 FBgn0036153 FBtr0076170 3 1 2 263 3L 11301765 11304930 ATCAGGTTTGATCCTTTGC 57 11305229 11305248 AAGCTGTTTATCCTTGGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32048 FBgn0052048 FBtr0076376 2 1 2 159 3L 9568818 9574505 TAAGGTACGAGTGCAAAGTG 59 9574683 9574704 CTATAGATGGGATGATTGAGCA 59 NA DesignNoJunction Drosophila melanogaster 50 path FBgn0036007 FBtr0076428,FBtr0076427 1 2 2 107 3L 9490135 9490223 CCAACAACCGATAATGAAACTC 59 9490049 9490067 GATTCCCATGATGAGACCG 59 NA Drosophila melanogaster 50 Use1 FBgn0035965 FBtr0076537 3 1 1 137 3L 9129412 9129430 TGATTGCCTTCGTAATTGC 58 9128894 9128912 CTTAACGAGCGTTTAAAGC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Arp66B FBgn0011744 FBtr0076737 1 1 1 83 3L 8108436 8108517 CTCCATCAAGTATCCGGTG 59 8108371 8108389 TACTTAAAGACGCACTGCT 58 NA Drosophila melanogaster 50 Prat2 FBgn0041194 FBtr0076945 3 1 2 147 3L 6906617 6907521 CAACACAACTGGACATAGC 58 6906488 6906506 AGATTGTTGATCATGCCCA 59 NA Drosophila melanogaster 50 Bre1 FBgn0086694 FBtr0077116 3 1 1 207 3L 5785974 5785993 CTAATAGTGCCAAGACACCA 59 5785672 5785804 GGCAACTGTCGTATATCCA 59 NA DesignRelaxed Drosophila melanogaster 50 sif FBgn0085447 FBtr0112712,FBtr0112708,FBtr0114646 3 3 8 117 3L 5661233 5661801 TCTATTGAGTTCGTTCAGGT 58 5661880 5661899 AATGCAGGTGATGTTAACAG 58 NA Drosophila melanogaster 50 ago FBgn0041171 FBtr0073246,FBtr0073247,FBtr0073245 2 3 3 100 3L 4247723 4247742 AAATTGTGGGACGTTAAGAC 58 4247576 4247660 GTGTCGTTTGCTCTAATCC 58 NA Drosophila melanogaster 50 CG11505 FBgn0035424 FBtr0073046,FBtr0073047,FBtr0073045 2 3 3 95 3L 3231785 3231918 CCAAAGAGAAAGATAATCGTCC 58 3231974 3231992 TAGTGTTGTGCTCTGTAGC 59 NA Drosophila melanogaster 50 BtbVII FBgn0012049 FBtr0073025,FBtr0073024 1 2 2 80 3L 3150144 3150225 GTACTTTCAGGCTTTGTTCAC 59 3150266 3150285 TTTAGGTCATCGTACTGCAC 59 NA Drosophila melanogaster 50 mRpS35 FBgn0035374 FBtr0072971 2 1 1 245 3L 2781128 2781209 AAGAATTCCGAGTGCTCAG 59 2781417 2781436 GTATCTTCATCAGCTCTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1317 FBgn0035333 FBtr0072901 3 1 1 298 3L 2370382 2370403 GGTATACGTTTACTACTTCGCT 59 2370048 2370124 TTTGTAAGAGCAGCAATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13919 FBgn0035248 FBtr0072759 1 1 1 60 3L 1645792 1645810 CCTCCCAAGTGATGATCTG 59 1645833 1645852 GTCACGTATATGGGAATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL17 FBgn0035122 FBtr0072503 1 1 1 60 3L 265001 265019 TGAACTGTTCTACAACCGT 58 265043 265123 ATTGGAAATGAGCAGTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13879 FBgn0035120 FBtr0072502 2 1 1 60 3L 258926 258944 ACCCTTAAGATCCCAAAGG 58 258968 258986 CCAGCGAATCTACCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33388 FBgn0053388 FBtr0086380 1 1 1 62 2R 15640789 15640807 AATACATCGGTTCTCGTCC 59 15640745 15640763 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33445 FBgn0053445 FBtr0086437 1 1 1 62 2R 15619770 15619788 AATACATCGGTTCTCGTCC 59 15619726 15619744 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12848 FBgn0040666 FBtr0072437 1 1 1 74 2R 20650292 20650310 ATTCGTGGAGAAGTACTGC 59 20650236 20650254 AACTTACGGTCCATGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 IFa FBgn0053527 FBtr0091490 1 1 1 121 2R 20465423 20465441 GTATCCCGTTAAAGCCTCC 59 20465320 20465338 TATTTGCTGTCGTTCTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3492 FBgn0035007 FBtr0072294 1 1 1 64 2R 20361101 20361119 GATCTACCTGGACATCGAG 58 20361147 20361165 TGAAGAGCTGGATGATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mov34 FBgn0002787 FBtr0072290 2 1 1 60 2R 20291457 20291475 CCACCAGATTGTCTACCAG 59 20291499 20291517 GTCATTGGTTATATCGGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30179 FBgn0050179 FBtr0072182 1 1 1 62 2R 19965169 19965187 AAGTTCTATGGGCCAAAGG 59 19965213 19965231 TTAAGCCATTGTCAGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13545 FBgn0034828 FBtr0071972 1 1 1 255 2R 19045543 19045617 GCTTTGGCCCTATTAATCC 58 19045306 19045324 TAGGATGAGGAGTAGACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30190 FBgn0050190 FBtr0113362,FBtr0113363,FBtr0071950 1 3 3 120 2R 18817485 18817503 TGAGGCCAAGAAATCAGAC 59 18817586 18817724 ATGTTGTAGTTGAAATCGCC 58 NA Nonspecific Drosophila melanogaster 50 T3dh FBgn0017482 FBtr0071848 1 1 1 86 2R 18218505 18218580 CAAACCTACTTTGGCTGTG 58 18218437 18218455 CAGAACACATCAAAGCCAG 59 NA Drosophila melanogaster 50 Oatp58Dc FBgn0034716 FBtr0113105,FBtr0071777 1 2 2 80 2R 18113468 18113488 CTATACTACACGTTGGGAGTG 59 18112902 18113429 GTATGAAAGACTCAACAAAGCC 59 NA Drosophila melanogaster 50 CG9865 FBgn0034649 FBtr0071680,FBtr0071681 1 2 2 60 2R 17556398 17556417 ATCTACTAATATCCGCCCTG 58 17556357 17556375 CTGTCGTGTAATTGTCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11136 FBgn0034540 FBtr0086233 2 1 1 92 2R 16547206 16547290 ATAGATAACTCACCGATCCA 57 16547345 16547363 TATTTCCAGGGAGGAACTG 58 NA Drosophila melanogaster 50 CG16739 FBgn0034505 FBtr0086286 2 1 1 175 2R 16229782 16229802 GCTTAAGGATCTGTACTTCAC 58 16229939 16230019 CCACTTTGACAATTCGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ena FBgn0000578 FBtr0086583,FBtr0086584,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582 3 6 6 94 2R 15048398 15048489 AAAGAATAAGGTCACCACCTC 59 15048545 15048563 TAGAGCTTCGTCCTATGGT 59 NA Drosophila melanogaster 50 unc-104 FBgn0034155 FBtr0113088,FBtr0113087,FBtr0087079,FBtr0113089 2 4 4 80 2R 12650303 12650322 CCATGATATGCAAGGATCTG 58 12650186 12650261 TATAGGAAACCTCAACCGAG 58 NA Drosophila melanogaster 50 CG6262 FBgn0034121 FBtr0087151,FBtr0087152,FBtr0087153 1 3 5 60 2R 12249831 12249849 GATCCAGATTGTCCATGTG 57 12249872 12249891 CTTGAACGACAATTAGTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cato FBgn0024249 FBtr0087183 1 1 1 75 2R 12165673 12165691 AACTAGGACCCATCATGGA 59 12165616 12165634 CCTGTGAAGCTGTTACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12964 FBgn0034022 FBtr0087358 2 1 1 62 2R 11376845 11377060 GTGCAGTTGCTCAATATCC 58 11376801 11376822 CCAAATACTGAGGATATTGAGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG8179 FBgn0034020 FBtr0087325 3 1 1 211 2R 11354265 11354358 AGATTGTCATACAGACCGG 58 11354533 11354551 TCTAATCCTACGCTTGGTC 58 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG30475 FBgn0050475 FBtr0087427 3 1 1 298 2R 10839406 10839425 TACCATCATAGTCACCACAG 58 10838913 10839145 GAAACAGCCATAACTGTCG 58 NA DesignRelaxed Drosophila melanogaster 50 Ercc1 FBgn0028434 FBtr0087448 3 1 1 65 2R 10741044 10741120 CTAATCCACACCAGAAGCT 58 10741149 10741167 CAGCATCAGTCTTGTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6347 FBgn0033874 FBtr0087637 3 1 1 178 2R 9725552 9726011 AGAGATATACGAATGGCCA 57 9726153 9726171 GAATAGATGTCCTTCGAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG30056 FBgn0050056 FBtr0087823 2 1 1 107 2R 8449866 8449884 ACGAGATCCTGATTAACCA 57 8449955 8449973 GATCGGAGATGGACATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr49Ac FBgn0033725 FBtr0087917,FBtr0087916 1 2 2 88 2R 8276584 8276771 GATCACTCTTACCTGACTGAG 59 8276821 8276839 TAGAATCCCTTGGCATGTG 59 NA Drosophila melanogaster 50 CG13204 FBgn0033627 FBtr0088129,FBtr0088128 3 2 2 204 2R 7256173 7256192 ATTTCCTAAAGCCCTTCCAG 59 7256417 7256435 TAGGTATTAACCGTGTGCG 59 NA DesignNoJunction Drosophila melanogaster 50 epsilonTry FBgn0010425 FBtr0088160 3 1 1 77 2R 7233445 7233464 GTATCGTCGGTGGTTATGAG 59 7233387 7233405 AGAAGTGTGATCCATAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alphaTry FBgn0003863 FBtr0088161 2 1 1 78 2R 7232251 7232269 CTAACACCATGGTCAACGA 59 7232191 7232211 CTAATAGCCTTGATGCTTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or47b FBgn0026385 FBtr0088166 3 1 1 84 2R 7207473 7207621 TTATACTCAGTCAGTGGAGG 57 7207408 7207426 TATATCCCTCTGGATGCCT 58 NA Drosophila melanogaster 50 BBS4 FBgn0033578 FBtr0088202 2 1 1 92 2R 7023913 7024338 CCGAACACTATACATAATGGG 57 7024392 7024410 TAAATCTCGTGGTCCTGTC 58 NA Drosophila melanogaster 50 Pfk FBgn0003071 FBtr0088420 3 1 3 167 2R 5997998 5998017 GTGTTTAAGAACCATGCAGG 59 5999073 6000132 ATGAAGTAGACCTTGCAGC 59 NA Drosophila melanogaster 50 CG1407 FBgn0033474 FBtr0088436,FBtr0088435 3 2 2 100 2R 5919791 5919809 CATGCTTCTGTTCTACCAC 58 5919621 5919728 GTATCCTCCATTGATCTGGT 58 NA Drosophila melanogaster 50 Mef2 FBgn0011656 FBtr0088444,FBtr0088443,FBtr0088447,FBtr0088445,FBtr0088446 3 5 6 90 2R 5806136 5806226 ATATGCAGATCAACGACAGAG 59 5806066 5806084 AAAGGAATAGCTCGTGAGG 59 NA Drosophila melanogaster 50 CG1690 FBgn0033442 FBtr0088496 1 1 1 72 2R 5645394 5645412 TATTTGTACGCTCCAACGA 59 5645340 5645358 TTGATCACCAAGCTTTGAC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 rad201 FBgn0003194 FBtr0088619 1 1 1 67 2R 5054460 5054478 AATTTCAACAGGCGTAAGC 59 5054411 5054429 GACTTCATAACCCGTTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8690 FBgn0033297 FBtr0088752 1 1 1 124 2R 4360989 4361010 CACACTTGAAGATATACAAGGC 59 4361095 4361173 TTTGGTCAGAGATCGTTGG 59 NA Drosophila melanogaster 50 CG30375 FBgn0050375 FBtr0088799 2 1 1 101 2R 4153885 4153903 AAATGACATAGCCTTGCTC 57 4153745 4153820 TAGTTGAAGCTGTTCTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12159 FBgn0033232 FBtr0088889 1 1 2 146 2R 3803014 3803411 TTATAGGCTCCGACTTTCC 58 3802674 3802904 TAAACCTGAACCAACTCGA 58 NA Drosophila melanogaster 50 CG12822 FBgn0033229 FBtr0088842,FBtr0088841 3 2 2 158 2R 3719998 3720016 GACATTGAGACGATAACCC 57 3720138 3720215 ATAATTGCTCTGACCTTGG 57 NA Nonspecific Drosophila melanogaster 50 CG30492 FBgn0050492 FBtr0088917,FBtr0088913,FBtr0113382,FBtr0088916,FBtr0088914,FBtr0088915 3 6 6 95 2R 3526397 3527215 CGGTGCTAAATAAGATTGTGG 59 3527271 3527290 TGAAATTCTCGTCAATGTGG 58 NA Drosophila melanogaster 50 Corin FBgn0033192 FBtr0088909,FBtr0088908 1 2 2 80 2R 3446452 3446472 ACAGATTCCCTACAACTACAC 59 3446514 3446589 GAATCCAAGTCCGTTTGAG 58 NA Drosophila melanogaster 50 CG1598 FBgn0033191 FBtr0088955 2 1 1 92 2R 3426864 3426883 ATCCGTGCTAATCATATCCA 58 3426707 3426809 AAGCCATTTACCTTTGTCG 58 NA Drosophila melanogaster 50 CG30438 FBgn0050438 FBtr0086068,FBtr0086067,FBtr0086069,FBtr0086070 2 4 4 83 2R 1436271 1436341 GAAATATGACATGGTGGCA 57 1436388 1436406 TCAGTGCTAAGATCAGGAC 58 NA Drosophila melanogaster 50 snoRNA:Psi18S-640b FBgn0083025 FBtr0113543 3 1 1 108 2L 20419014 20419033 ATGTTGAAGATGATGTGGCT 59 20419104 20419122 AGTTGGCAACCATCTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9318 FBgn0032880 FBtr0081393 2 1 1 63 2L 20731804 20731825 GCTGAAATGGAAGAGTAATGTC 59 20731708 20731780 CAATGAGAAGACCACACCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG13077 FBgn0032810 FBtr0081257 3 1 1 290 2L 19566372 19566391 TATTTCCTATCTCACGCTGC 59 19566995 19567013 AGAATGCACAGTACGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31800 FBgn0051800 FBtr0081179 2 1 1 153 2L 19033923 19033999 TATCACCGGAAGAATGGAG 58 19033788 19033806 CCATCTAGTGCCTTTAGCA 59 NA Drosophila melanogaster 50 hk FBgn0001202 FBtr0081180 2 1 1 75 2L 19031684 19031702 AATGAACGCATTCTTTCCC 58 19031563 19031645 GTTTACCAAACTCGCTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Nak FBgn0015772 FBtr0081189,FBtr0081187 3 2 3 122 2L 18965177 18965270 GATGAATGCGAGATTGCAC 59 18965073 18965094 TTAAGATCCCGATGGATAATCG 59 NA Drosophila melanogaster 50 bsf FBgn0032679 FBtr0081087 2 1 1 107 2L 18452097 18452115 AGATTTCCGAACTTCTGGG 59 18451952 18452026 GCTCGAGTTCATTGATGGA 59 NA Drosophila melanogaster 50 Fas3 FBgn0000636 FBtr0081052 3 1 4 88 2L 18384849 18384867 TACTGATTGTGTTTGCACG 58 18387311 18392257 GTTGTTTGTCTTGGTTTCGT 59 NA Nonspecific Drosophila melanogaster 50 CG31746 FBgn0051746 FBtr0081060 3 1 1 88 2L 18193058 18200634 ATATCAGCACAGTTCTGGG 59 18192988 18193007 ATTACATCGATCTGCTCCAG 59 NA Drosophila melanogaster 50 CG31741 FBgn0051741 FBtr0081032 1 1 1 84 2L 18085926 18086008 AACTATTGAAGCTTGCCCT 59 18086056 18086074 ACGACTATTGACATTCCCA 58 NA Drosophila melanogaster 50 CG31804 FBgn0051804 FBtr0080967 2 1 1 60 2L 17364007 17364028 ATTACTGGATATCCTTGAAGGG 59 17364048 17364067 AGAATCCAACGAACATTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4278 FBgn0014092 FBtr0080834 1 1 1 60 2L 16327366 16327386 GCTCATAATCAGCTATCATCC 58 16327408 16327426 ATGTGACTGCGTAATCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31826 FBgn0051826 FBtr0080762 2 1 1 249 2L 15772679 15772697 TACTTTAGTCAGTGAGCGT 57 15772389 15772466 TTAGGTCCTCGCATTTCTC 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG15293 FBgn0028526 FBtr0080603 2 1 1 198 2L 14109137 14109209 CTTCTGAAGCTGAAGGGAG 59 14108957 14108975 TGAAATCCGGACCTAACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5446 FBgn0032429 FBtr0080388 2 1 1 60 2L 12427508 12427526 GAACTACTCCCTGAACAGC 59 12427385 12427484 TACGTATATGGTCAGCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6712 FBgn0032408 FBtr0080364 3 1 1 65 2L 12095332 12095350 CCTGAAACTACGTTCCCTG 59 12095285 12095304 ATTATCCAGGCATAGTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 prd FBgn0003145 FBtr0080299,FBtr0080298 2 2 2 60 2L 12084916 12084934 CTGCGTATCGAAGATCCTG 59 12084874 12084893 AATTACGCCTGGTCTAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kek2 FBgn0015400 FBtr0080252 2 1 1 60 2L 11622177 11622195 AAACGTTTCAGGACTACAG 57 11622219 11622237 TCCCTGATAGGATTTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12299 FBgn0032295 FBtr0080113 3 1 1 104 2L 10739983 10740004 TAGACTCTGACATGTACTACGA 59 10740069 10740087 CATCGGTGTAAACCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Apf FBgn0051713 FBtr0079895 1 1 1 61 2L 9938492 9938510 GTACGACGAGAAGGATCTG 59 9938449 9938467 GCACCTGATAATTCAGGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pelo FBgn0011207 FBtr0079847 3 1 1 81 2L 9706675 9706693 ATCTGGTCGAATCCATTCG 59 9706738 9708154 TGAGCAAGTTGTTCTCCTG 59 NA Drosophila melanogaster 50 alien FBgn0013746 FBtr0079781,FBtr0079780 3 2 2 117 2L 8995734 8995811 CTAGATGACACAATCAAGGGA 59 8995637 8995655 ATTGGATTTGGTTGGACCA 59 NA Drosophila melanogaster 50 CG9510 FBgn0032076 FBtr0100480,FBtr0100481 2 2 2 64 2L 8940290 8940308 AAGCAGGAATCAATGGAGG 59 8940187 8940262 AGATAGTAGGCCCAGTCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG34398 FBgn0085427 FBtr0112648,FBtr0112649 2 2 2 86 2L 8927410 8927428 CATAGATAGTGCCGACGTC 59 8927478 8927561 CTGGTGATTCCACTATCCC 59 NA Drosophila melanogaster 50 Snx6 FBgn0032005 FBtr0079631 3 1 1 112 2L 8219987 8220058 ATGCTGGCTACATTATTCC 57 8219893 8219911 TTTGAACTCCTCTTTGGTC 57 NA Drosophila melanogaster 50 CG14534 FBgn0031957 FBtr0079563 3 1 1 192 2L 7860586 7860685 GTGTTAGTGGTCCTCATGG 59 7860412 7860430 GTACATGGACGTAGACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k09022 FBgn0086451 FBtr0079343 2 1 1 88 2L 6859532 6859550 AGATTACGTCTGTTCCACC 58 6859666 6859684 TAATGTCCACCAAGTAGGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13981 FBgn0031807 FBtr0079279 2 1 1 168 2L 6379272 6379290 CTACGTGTAGTGTCGAGTC 59 6379122 6379140 CAATCACCGAATTTGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gef26 FBgn0021873 FBtr0079249 3 1 1 87 2L 6325595 6325723 GCATGGATAGTCTTACCGT 58 6325773 6325792 AGTACTTCCACATCTTCCTC 58 NA Drosophila melanogaster 50 stai FBgn0051641 FBtr0079198,FBtr0079196,FBtr0079197 1 3 3 96 2L 6121936 6122015 GTCGCATTTCTCTAGAAGC 58 6122075 6122093 TCATTGGTGATCTCATCCT 57 NA Drosophila melanogaster 50 obst-E FBgn0031737 FBtr0079163 2 1 2 126 2L 5765983 5766001 AATCAGTGCTCTATTGTGC 57 5764186 5764205 GTTCTTGCACTCAATGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3652 FBgn0031600 FBtr0077460 2 1 1 137 2L 4393371 4393389 ATACTACAAGGCTCCTCCA 59 4393190 4393271 GAAGAATGAGATATTGCCGC 59 NA Drosophila melanogaster 50 for FBgn0000721 FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305 3 10 10 112 2L 3623190 3623275 CGAGTTACTTACTGGTACCC 59 3623097 3623115 CATTGCGGGTGATATTCCT 59 NA Drosophila melanogaster 50 CG12795 FBgn0031535 FBtr0113019 3 1 1 63 2L 3453264 3453432 ATACAGGGCAATATGAGCG 59 3453459 3453477 GCTCCATAATGGATAAGGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG3347 FBgn0031513 FBtr0077579 1 1 1 60 2L 3270777 3270934 GGACACGTTGGTTTATTGG 59 3270955 3270976 TACGATATCTCGATTTCCTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17260 FBgn0031498 FBtr0077653 3 1 1 65 2L 3038338 3038356 CCAGAGGACATAGAAACGG 59 3038385 3038403 GAGATGACCACAGTAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hrs FBgn0031450 FBtr0089751,FBtr0089749,FBtr0089750 2 3 3 60 2L 2741915 2741933 TGAAGTGCAGATCGATGAG 59 2741955 2741975 GTTAACAAAGATCTCCACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17302 FBgn0031443 FBtr0077699 3 1 1 284 2L 2656123 2656143 TAAACAAGGAGTCGATAAGCC 59 2660458 2660479 CCCACAACTTAAATTGAATCCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15394 FBgn0031439 FBtr0113016 1 1 1 211 2L 2588892 2592138 CTCATTTGGAATCTCGGCT 59 2592371 2592390 GCGATGAGTGTTCATTTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9870 FBgn0031422 FBtr0077768 3 1 1 70 2L 2383990 2384008 GCTGCTATAGTCTGTTGGT 59 2384042 2384113 GTGAAGGAATAGCAAACCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15390 FBgn0031419 FBtr0077764 3 1 1 102 2L 2374808 2374883 ACTTACATCACATAAGGCAC 57 2374948 2374966 GAGAATACAGCTAACGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16995 FBgn0031412 FBtr0077758 1 1 1 90 2L 2308170 2308188 ATTTATATCGGGCCAAGCA 59 2308242 2308315 GACAGCAAATAATTGGCCC 59 NA Drosophila melanogaster 50 CG31670 FBgn0031375 FBtr0077870 3 1 1 189 2L 1952869 1954321 TTTACTTTAGTCCGCGTGG 59 1952698 1952716 TCCATGATCTTGGCTATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18131 FBgn0031343 FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934 3 4 6 63 2L 1500146 1500167 GCCAGCTTATATCTAATGACCT 59 1500036 1500123 GATATGTTGACTTGAGTGGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG11555 FBgn0086856 FBtr0078128 1 1 1 60 2L 274575 274596 GAGATAATGCACATCCTTATCG 58 274615 274635 CCTTTCTGAAACGGATTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR32200 FBgn0052200 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG17162 FBgn0039944 FBtr0113724,FBtr0113726,FBtr0113723,FBtr0113725,FBtr0113722 1 5 5 60 XHet 67548 67566 TACTCACTTAAATCGCCCA 58 66298 66316 TTATAGACGTTTGATGCGG 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG1801 FBgn0031171 FBtr0077231 1 1 1 80 X 21179300 21179320 AGCCATGGATTCTATCTAGAG 58 21179167 21179258 ATCCTTACGCAAATTCTCC 57 NA Drosophila melanogaster 50 CG14234 FBgn0031065 FBtr0074790 1 1 1 103 X 19631527 19631545 AGTACGTGACCATTCTCAC 59 19631611 19631743 GCCGATTATCCAATTGATGG 59 NA Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074573,FBtr0074575,FBtr0074574,FBtr0074571,FBtr0074570 3 5 6 171 X 18286786 18286878 CCTTGGCAGAGTACAAGTC 59 18286633 18286651 TCCACTTTCAGCAGATTCC 59 NA Drosophila melanogaster 50 X11Lbeta FBgn0052677 FBtr0071493 2 1 1 116 X 10597389 10597407 ATCTCTACGAGTTCTCGGA 59 10597487 10597606 ACTGGATGTCAATGCTGTC 59 NA Drosophila melanogaster 50 CG15249 FBgn0030161 FBtr0112966 1 1 2 101 X 9782869 9782887 AATTTAGCGATCCAGGTCC 59 9782720 9782738 GTTCCTCGCTGTTACTACC 59 NA DesignNoJunction Drosophila melanogaster 50 trol FBgn0001402 FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964 3 4 7 81 X 2386428 2386446 TAGTAATGATCGCAGACCG 58 2384862 2386383 TCCAACGTCGTTATTCTCC 59 NA Drosophila melanogaster 50 CG41527 FBgn0085670 FBtr0114117 3 1 1 61 U 3401255 3401273 ATTCGATACAAAGAGCGAC 57 3401298 3401316 AGGTACCATGAGAATAGCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11626 FBgn0038705 FBtr0113247 1 1 1 106 3R 15235692 15235769 AGTTATAGTGCTTCTATACCGC 59 15235835 15235854 CTTCCTTCCGAATAAAGCAG 58 NA Drosophila melanogaster 50 P5cr FBgn0015781 FBtr0083713 3 1 1 62 3R 14855097 14855115 TTTCATCTGCGTAAAGCCA 59 14855140 14855159 ACGTGCTTGTATTTAAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpo FBgn0000363 FBtr0083534,FBtr0083536,FBtr0100377,FBtr0083535,FBtr0083537 2 5 6 175 3R 13793462 13793481 ACGCCATAATGGAGAATCAG 59 13832725 13832808 TTCATAGCCCTCATAGGCT 59 NA Drosophila melanogaster 50 CG14864 FBgn0038311 FBtr0110811,FBtr0083128 2 2 2 60 3R 11093539 11093560 GTAAATAAACCGACCTTTGGAG 59 11093500 11093518 AGAAACTACAGGTGCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mura FBgn0037705 FBtr0082118 1 1 3 145 3R 5372637 5372656 TGCAACGTCAATTTAAACGG 59 5368638 5372529 TGTACATCGCAATTTGGGT 59 NA Drosophila melanogaster 50 Dfd FBgn0000439 FBtr0081621 1 1 1 120 3R 2627071 2627355 GATGAATGAGTGCATTCGT 58 2627439 2627457 CTGAGATCCCGGATAAGAG 58 NA Drosophila melanogaster 50 CG1208 FBgn0037386 FBtr0113197,FBtr0113196 1 2 2 117 3R 1662757 1662830 TTTAATTGGTATCGCAACGG 58 1662910 1662928 AATCGTAAGGAGCAACTGG 59 NA Drosophila melanogaster 50 CG33170 FBgn0053170 FBtr0089836 3 1 1 98 3L 22858910 22858981 TCACAGAACTATGAGGTCC 57 22859042 22859061 CTTGTTCTTGGTTTGATCCA 58 NA Drosophila melanogaster 50 Smc5 FBgn0052438 FBtr0078374,FBtr0078373 3 2 3 197 3L 21565422 21565496 TAAAGCAGCAACCAGAGAC 59 21565656 21565675 AAGTCATGTATTGCCTCTCG 59 NA Drosophila melanogaster 50 eRF1 FBgn0036974 FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177 1 6 6 80 3L 20344766 20344787 GGAGATTATCACGGATAAGTCC 59 20344828 20345922 TTGTAGCGTAAGATACCGC 59 NA Drosophila melanogaster 50 CG5103 FBgn0036784 FBtr0075132 3 1 1 64 3L 18286740 18286758 ATAGGCACTGAAATGGAGG 59 18286694 18286712 AAGACTAGGGCATTGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7510 FBgn0036741 FBtr0075182 1 1 1 80 3L 17619486 17619601 GCTATCCCATAGTTATGGCTC 59 17619643 17619661 GTGAGATAGGAGCCATCAG 58 NA Drosophila melanogaster 50 TpnC73F FBgn0010424 FBtr0089585 1 1 2 161 3L 17040551 17040569 CGTTTGTACGATAAGCAGG 58 17040691 17041075 CTCCATGAATTCATCGAAATCC 59 NA Drosophila melanogaster 50 CG5018 FBgn0036578 FBtr0075484 1 1 1 157 3L 16219781 16219799 ATCCCAAAGAGCTTGTGAG 59 16219414 16219432 GTTGACAAGTTCGTTAGGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG10948 FBgn0036317 FBtr0075939 3 1 3 112 3L 12841550 12841568 ATGTACGAAGACTCCATGC 59 12840243 12841475 TTCAATCTGAGTGAATTGCG 58 NA Drosophila melanogaster 50 CG4328 FBgn0036274 FBtr0076008 3 1 1 86 3L 12285040 12285058 CAGTATGTGGTCAAACAGG 58 12284916 12284990 GCCATAGAAATCGTATCCC 57 NA Drosophila melanogaster 50 Fuca FBgn0036169 FBtr0100588,FBtr0100587 2 2 2 60 3L 11513424 11513442 TATTCAATGCCACCAAGTG 57 11513301 11513400 AGCACAACATATCTGGCTC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG8600 FBgn0035765 FBtr0076883 1 1 1 240 3L 7327666 7327684 TTTCACTGAGCTGAAGGAC 59 7327372 7327390 TACTTAGATGTCGCTCTCG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7995 FBgn0035266 FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767 2 5 5 157 3L 1743701 1743719 CATCTCCACGTACTTCTCG 59 1743909 1743927 TTACATCCGTGATGTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34413 FBgn0085442 FBtr0112685,FBtr0112684,FBtr0112683,FBtr0112686 3 4 4 81 2R 20770530 20770605 CTTCCTGCAAGTGATAACG 58 20770649 20770668 AAAGTTCACTAGGATAGGCG 59 NA Drosophila melanogaster 50 wrapper FBgn0025878 FBtr0071821 2 1 1 101 2R 18269324 18269342 CTCAAGTTCCGACAGATCC 59 18269406 18269489 ATAGATGAGTCCGTTTGTGG 59 NA Drosophila melanogaster 50 CG15122 FBgn0034457 FBtr0086466 2 1 1 60 2R 15397597 15397616 GACATGCATCCAATCTACGA 59 15397638 15397657 TAGAGTTGAAGAACTGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cora FBgn0010434 FBtr0086507,FBtr0086509 3 2 4 184 2R 15124300 15124318 TTCAATAGGACTCTGTCCG 58 15124563 15125670 TCCTTATCAGCATCCTTCTC 58 NA Drosophila melanogaster 50 Lis-1 FBgn0015754 FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240 2 6 6 64 2R 12070571 12070592 GCTCAAATGATCAGACAATACG 59 12070617 12070702 GCGTAATTCAACCTTGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG18568 FBgn0033888 FBtr0087608 3 1 1 62 2R 9859557 9859575 ATAAGCTAATCCTTGGCGA 58 9859513 9859531 CTATTTGATCGACCAGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4676 FBgn0033815 FBtr0087743 3 1 1 60 2R 9123630 9123648 CATTGTTATGCCGGAACTG 59 9123672 9123690 GGCCAACCATAATAACGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tou FBgn0033636 FBtr0113066,FBtr0088091 3 2 5 80 2R 7477440 7477521 GATTACATGATGGGTACTGG 57 7477379 7477399 GTACTTGATTATCTCCGTGTC 57 NA Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414 3 10 10 73 2R 5991854 5991872 TGTCGACAGTCGATAAGGA 59 5991906 5992234 CATATCATCGTAACGTTCTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 brp FBgn0086376 FBtr0111001,FBtr0113488 1 2 2 182 2R 5424065 5424083 AAGAAGCTCATGGATACGC 59 5424438 5424530 GATCTTTAAGGCTTGTTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 Socs44A FBgn0033266 FBtr0088784 1 1 1 60 2R 4015967 4015985 AACCCTGCATTATCGACTG 59 4016007 4016027 GTACTTAAGTTCCTCGAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 EcR FBgn0000546 FBtr0086012,FBtr0086011,FBtr0086008,FBtr0086010,FBtr0086009 3 5 5 80 2R 1981445 1981523 CGTATAATGAGTCAACCCG 57 1981383 1981401 CGTGAGTATGGTTATCTCG 57 NA Drosophila melanogaster 50 bur FBgn0000239 FBtr0081497 3 1 1 83 2L 21176599 21176682 AATAAGGTGTTGCTCCTGG 59 21176534 21176552 CTGATGAGGGTACAAAGCA 59 NA Drosophila melanogaster 50 Top3alpha FBgn0040268 FBtr0081246 2 1 1 72 2L 19499084 19499155 AAGATTAAGGTTCTGCACAC 58 19499190 19499208 TATCGAAGAGTCGGTTTCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG4103 FBgn0028925 FBtr0080727 2 1 1 60 2L 15009374 15009394 CTCTCAATGTGATGAATGCTG 59 15009334 15009353 AGGACAATATCCCGAAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 osp FBgn0003016 FBtr0089866 3 1 3 92 2L 14600871 14601145 TTTGAGCTACCAAGGTCTG 59 14600797 14600818 GTTATTTCTGATGATGCTGGTG 59 NA Drosophila melanogaster 50 Gdi FBgn0004868 FBtr0079862 3 1 1 293 2L 9492856 9492876 ATTAAGCTCTACTCCGATTCG 59 9492501 9492519 GTCCAGAATGCAAATGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4495 FBgn0031893 FBtr0079405 2 1 2 106 2L 7182804 7182822 GAATCGGAAGATAGCGAGG 59 7182890 7183173 TACTCAATGATCTTCCTCTCG 58 NA Drosophila melanogaster 50 Rtnl1 FBgn0053113 FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039 1 7 7 111 2L 4994867 4994885 CTACTTGTCGCTCCTAACC 59 4994704 4994794 CTCCAGGTAATCCTTAAAGGG 59 NA Drosophila melanogaster 50 for FBgn0000721 FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305 2 10 10 81 2L 3624268 3624289 GCTAATTTCCAATCTAGACGAG 58 3623866 3624229 GAATTCCTCGTTGATCTTTCTG 59 NA Drosophila melanogaster 50 Tak1 FBgn0026323 FBtr0077319 3 1 1 118 X 20393466 20393543 AGATCTACAAGGGTGAACG 58 20393366 20393384 CACTATGTACTGCATCGAC 57 NA Drosophila melanogaster 50 Tao-1 FBgn0031030 FBtr0074773,FBtr0074771,FBtr0074774,FBtr0074772 3 4 4 90 X 19465922 19466012 TGCTCGAGAATAAGATGGA 57 19465850 19465869 TCTTTAGTATGCTTCTCGTG 57 NA Drosophila melanogaster 50 CG11802 FBgn0030346 FBtr0073600 1 1 1 64 X 11765984 11766002 ATATACCGCAGTTTCTGCC 59 11765938 11765956 TGCATCTCGTGTATTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dsh FBgn0000499 FBtr0073454,FBtr0073455 1 2 2 60 X 11251506 11251524 CACGACAGTATTATTGCCG 58 11251548 11251566 GGTTATTCTGGTCCAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Atg5 FBgn0029943 FBtr0071065 3 1 1 105 X 7216497 7216600 ATACAGACGATGACTTCACG 59 7216411 7216429 ACAGGTGTCGATAATTCGG 59 NA Drosophila melanogaster 50 torp4a FBgn0025615 FBtr0070690 2 1 1 63 X 4543647 4543665 ATACATATTGCCGGTTTGC 58 4543544 4543620 AATTCATCTATTCTCGCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14418 FBgn0040354 FBtr0070565 3 1 1 72 X 2777245 2777263 ATCAGGAGCAGATTGTCTG 59 2777191 2777209 TTCTTCACCTGATCACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34110 FBgn0083946 FBtr0110797 3 1 1 83 3R 20995701 20995719 ATAACGCCTGTCTAAACGA 58 20995578 20995657 CGGAGGTTAAATCTTCATAGTG 58 NA Drosophila melanogaster 50 CG31111 FBgn0051111 FBtr0084790 3 1 1 60 3R 20881795 20881813 TTAAAGTATAAGCGGCGCT 59 20881603 20881774 TCTCCAGTAGATAACTCTTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp93a FBgn0038859 FBtr0084030 2 1 2 144 3R 16955075 16955160 CTTTGCATGCATGTATTGC 58 16954949 16954967 CTCTTCAACATCAGTTGCG 59 NA Drosophila melanogaster 50 Ssdp FBgn0011481 FBtr0083612,FBtr0083611,FBtr0083613 1 3 3 65 3R 14020957 14020975 AAGATCAAGGAGAGCATGC 59 14020910 14020928 GTAGTCCGGATGATCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31287 FBgn0051287 FBtr0083256 1 1 1 117 3R 12029565 12029583 AGTATGCTGATGTCTTCGA 58 12029663 12029739 GCTTGGTTACCAAATTTACG 57 NA Drosophila melanogaster 50 lds FBgn0002542 FBtr0081758 1 1 1 91 3R 3747546 3747865 GAATCGCTAAAGGACCTCC 59 3747920 3747938 ATAAGCGATACCTTCAGGC 59 NA Drosophila melanogaster 50 CG9809 FBgn0037248 FBtr0078946,FBtr0078945,FBtr0078947 1 3 3 99 3R 249717 249737 GAAACCACCAAGGAAATTCTG 59 249579 249657 CGAACCCATACTTCATTCCA 59 NA Drosophila melanogaster 50 CG14455 FBgn0037175 FBtr0078543 2 1 1 60 3L 22680018 22680036 CTTTCAAGGTCATCCTCAC 57 22679976 22679995 TTAAGGTCCAGGAACTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32448 FBgn0052448 FBtr0078449 2 1 1 129 3L 21821272 21821290 TTAGTGGAGAAGACGACGA 59 21821095 21821179 TAATCTTGTTCGGCTTGGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG32444 FBgn0043783 FBtr0078424 2 1 1 94 3L 21630406 21631259 TATCCAGGACAAATTCCAGC 59 21631316 21631334 GAAATATCACTCCCTCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fng FBgn0011591 FBtr0078267 3 1 1 83 3L 20936717 20936735 ACGACGAAGAACTATCACG 59 20929803 20936670 GAAGAACCAGGTCTGATCG 59 NA Drosophila melanogaster 50 CG18223 FBgn0036832 FBtr0075070,FBtr0075071 1 2 2 60 3L 18913132 18913152 CATATCGAGAACCTACATCCT 58 18913033 18913110 TACGATCTTGCGCTTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7589 FBgn0036727 FBtr0075221 1 1 1 80 3L 17465633 17465714 CTGGAAAGACCATTTGAATACG 59 17465752 17465773 CAGGAAGTACACATAAATACGC 59 NA Drosophila melanogaster 50 TpnC73F FBgn0010424 FBtr0089585 2 1 2 162 3L 17040550 17040568 CCGTTTGTACGATAAGCAG 58 17040691 17041075 CTCCATGAATTCATCGAAATCC 59 NA Drosophila melanogaster 50 rhea FBgn0020254 FBtr0076627 3 1 1 88 3L 8562029 8562047 TAACTGCACTAAGTTGGCC 59 8562099 8564083 CATTCAGCACCATAACCCT 59 NA Drosophila melanogaster 50 CG34264 FBgn0085293 FBtr0112459 3 1 1 66 3L 317251 317269 TGGACGACCCTAATATGGT 59 317299 317317 AAGTTTCGCTTCAGAAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MAN1 FBgn0034962 FBtr0072166,FBtr0072167 2 2 2 60 2R 19922796 19922815 GAAGTTCAACTATCCCACTG 57 19922836 19922856 AGTTAGCCTTTCTTTCCTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3803 FBgn0034938 FBtr0072208 3 1 1 227 2R 19841234 19841252 ATAAAGCCCATCAGCACTC 59 19840910 19840987 CTTTAGCTTGTACTCTGGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG9850 FBgn0034903 FBtr0100330,FBtr0100329 3 2 2 92 2R 19655723 19655744 CCTATATCATCTATCCGGAGGT 59 19654947 19655670 TGAAGTAGCGTTTGACCTG 59 NA Drosophila melanogaster 50 CG30389 FBgn0050389 FBtr0071633,FBtr0071632,FBtr0071634 1 3 3 80 2R 17037702 17037783 AAGTGGAACAAGAGTACCG 59 17037640 17037661 TTAATAGAATCTCGGGATCAGG 58 NA Drosophila melanogaster 50 CG10934 FBgn0034263 FBtr0086859 1 1 1 60 2R 13610345 13610363 GATAATGGTCACTCATGCC 57 13610387 13610405 ATAGTATCTGTACGTCCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAP54D FBgn0034249 FBtr0086900,FBtr0086901 3 2 2 100 2R 13477349 13477420 GGAGAAGAATCTCACCCAG 59 13477267 13477285 AATTCAGTGGTTTGTCGTG 58 NA Drosophila melanogaster 50 Cyp6a8 FBgn0013772 FBtr0087455 3 1 1 117 2R 10775311 10775389 TAGATGAAACTCTGCGACTG 59 10775213 10775231 ATGATGACCGATTGACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6a9 FBgn0013771 FBtr0087457 3 1 1 77 2R 10767788 10767806 TGGAAAGTACAACGGAGAG 58 10767676 10767748 AGGGTTTCCGATATAACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8531 FBgn0033918 FBtr0087538 3 1 1 80 2R 10145863 10145943 GATTCATCAAAGAGCGACC 58 10145986 10146005 ATAGGTGTACTCTATCCGCA 59 NA Drosophila melanogaster 50 Dmn FBgn0021825 FBtr0088641 1 1 1 110 2R 4780392 4780413 CAGAAGATTACGGAACTATACG 58 4780484 4780568 TGCATATTTATGGAGGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 brat FBgn0010300 FBtr0081159,FBtr0081160,FBtr0081158 2 3 3 60 2L 19170833 19170851 CATCTTTGATCAGAACGGC 58 19170875 19170893 GAACTCGAGGTGCTTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bun FBgn0010460 FBtr0080378 3 1 6 171 2L 12482649 12482667 ACCACAGTCGTCAATATGG 59 12458211 12477120 ACTTGACCAGATCCATTGC 59 NA Drosophila melanogaster 50 Mt2 FBgn0028707 FBtr0110911 2 1 2 142 2L 12096646 12096713 TATGCCCAATTGGATGGAC 59 12096819 12096837 TGAAGCTTTGTGACTTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9541 FBgn0032083 FBtr0079785 2 1 1 81 2L 8971317 8971335 CTTGGAACTCTTTCGTGAG 58 8971185 8971272 GTCTCCATCAACAATCTGC 58 NA Drosophila melanogaster 50 Acp24A4 FBgn0051779 FBtr0110767 2 1 1 74 2L 3693707 3693795 TGAAATCTGTGGATTACCCG 59 3693652 3693670 TGAGCATCATAAGACCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11023 FBgn0031208 FBtr0089256 1 1 1 60 2L 8571 8668 ACAGGATGATAAATCGACGG 59 8688 8709 GTCTTCGGTAGTTATGTGTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 tRNA:V4:89BC FBgn0012011 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR32330 FBgn0052330 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-305 FBgn0067700 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 su(f) FBgn0003559 FBtr0113732,FBtr0113736,FBtr0113733,FBtr0113734 1 4 5 139 XHet 78220 78304 CCACATTGGTCTATGTTCAG 58 78406 78424 ATACTCCATTAAAGCAGCG 57 NA Nonspecific Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210 1 5 8 85 X 21247686 21250626 ACATGACGCTTATGAAATGG 58 21250674 21250692 AAAGTGGCCATAGAAGGTC 59 NA Drosophila melanogaster 50 Sdic3 FBgn0052823 FBtr0089465 3 1 1 115 X 20087949 20087967 TAAGCGTCTACAATGTGCA 59 20085962 20087870 ATCAAATGCAAGCACATCG 59 NA Nonspecific Drosophila melanogaster 50 wupA FBgn0004028 FBtr0074521 1 1 7 81 X 18006019 18006040 CAGTAAGATACTGAAACTGGAG 57 18000953 18005980 GAGATCGTTGATCTCATAATCC 58 NA Drosophila melanogaster 50 CG32556 FBgn0052556 FBtr0074477 3 1 2 187 X 17578306 17578324 ATTCAAGAGGTCTTCGGAC 58 17571526 17578155 TTCACGTAGGTCTGATCTG 58 NA Drosophila melanogaster 50 caz FBgn0011571 FBtr0074217 1 1 2 93 X 16186059 16186077 GGACACCATCTTTGTCTCC 59 16186132 16186236 CTTGTCTTTCTTGATGATGCC 59 NA Drosophila melanogaster 50 CG9170 FBgn0030716 FBtr0074154,FBtr0074153 2 2 2 90 X 15875695 15875780 GAAGATATGCTACTCGGAGG 59 15875624 15875642 TATGGCATCTAGTGGATGG 58 NA Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 2 9 9 111 X 15788791 15788877 GAGTTACCGAATATGGCGA 59 15788952 15788970 TTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 Chc FBgn0000319 FBtr0112798,FBtr0074180,FBtr0112797,FBtr0074182,FBtr0074181,FBtr0074179 3 6 6 95 X 15722670 15722757 CTTTATCAGTGTTACGACTTGC 59 15722596 15722615 CTGAATCAAATAGGGCATGG 58 NA Drosophila melanogaster 50 mRpS25 FBgn0030572 FBtr0073945 3 1 1 74 X 14476545 14476563 GATCACCTGGTTAAGGTGG 59 14476346 14476364 GTCCTTGCTCTCCTTTAGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG13404 FBgn0030559 FBtr0073921 3 1 1 67 X 14159851 14159869 GTTACTATACGGACTGGGC 59 14159715 14159733 CATAATCATGTTCGCCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11674 FBgn0030551 FBtr0073926 3 1 1 61 X 14119284 14119303 AATCAAGCTGTCTAGAGGAC 58 14119242 14119260 CTTTGTCAGGCAAATCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ste:CG33239 FBgn0053239 FBtr0073876 1 1 1 60 X 13951420 13951439 GTATTTCAGCGAGATACTGG 57 13951379 13951397 CAAGCCAGAGGAACTATCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32628 FBgn0052628 FBtr0113442 1 1 2 174 X 13609631 13609791 ATCGTCGTAAGAAGTCCAC 59 13609929 13609947 TAACCATTATGTCCGGACG 59 NA Drosophila melanogaster 50 CG1764 FBgn0030467 FBtr0073796 3 1 1 98 X 13189613 13189631 AGTTTCACCAATGAGGAGG 59 13189389 13189407 GTACTTCAGCCTCTTGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 HDAC4 FBgn0041210 FBtr0100425,FBtr0073797 3 2 3 103 X 13165612 13170475 TCATGGAGCTCAAGAAGAG 58 13165527 13165548 CTCCAATTGAAGTTTATGCTCC 59 NA Drosophila melanogaster 50 CG32642 FBgn0052642 FBtr0073713 1 1 1 60 X 12853404 12853424 GTATAGTGATTATTCGGGCTC 57 12853446 12853464 TGCATCGTAGTTGACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Smr FBgn0024308 FBtr0073707,FBtr0073706,FBtr0073708 1 3 3 84 X 12604887 12604906 ATTATCTTGGACAGAAGCTG 57 12604744 12604840 TTGGATTCACTAACATCCG 57 NA Drosophila melanogaster 50 cac FBgn0005563 FBtr0100303,FBtr0100302 1 2 10 157 X 11856301 11856319 TTCACCGGAATGTTTAGTG 57 11848301 11856054 TTGATTGAGTTCGAATCCC 57 NA Drosophila melanogaster 50 SelG FBgn0030350 FBtr0073570 2 1 1 170 X 11781587 11781668 GCCATTAAGCAGCTATTCC 58 11781802 11781820 TCTTAGTCCACCTGATCCT 58 NA Drosophila melanogaster 50 CG10347 FBgn0030342 FBtr0073602,FBtr0073603 1 2 2 60 X 11747672 11747693 TCTGGATGAGGTTATATTCGAC 59 11747633 11747652 TGCACTTAAATCATCTCCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tim8 FBgn0027359 FBtr0073482 3 1 1 94 X 11262534 11262555 GGTCAATTTGTAGATTGCTCAC 59 11262610 11262628 AATCAAGAGGAACTCCTGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Kap3 FBgn0028421 FBtr0112931,FBtr0112934,FBtr0112933,FBtr0112932,FBtr0073459 1 5 5 80 X 11231087 11231171 GTGCAATATAAGATTGGATCGC 59 11231028 11231048 CAGCTCATTTCTCATTGTCTC 59 NA Drosophila melanogaster 50 CG15200 FBgn0030278 FBtr0073445 1 1 1 67 X 11077355 11077373 TAATGGAGAAGCCTTCTGC 59 11077404 11077422 AATCGCCCTTAATTCTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ran FBgn0020255 FBtr0073471 2 1 2 83 X 11040023 11040041 GTCGATATCAAGGATCGCA 59 11039880 11039979 GGCAGAAATATCGTAATACTGC 59 NA Drosophila melanogaster 50 Ork1 FBgn0017561 FBtr0073405,FBtr0073404 3 2 2 97 X 10776329 10776347 GATCATGATCGCGTATTCG 58 10776184 10776268 TGTAGATCGCTTCAAACGT 59 NA Drosophila melanogaster 50 CG32669 FBgn0052669 FBtr0073412 1 1 1 60 X 10738687 10738707 CAATCTGTCGTATGTGTTGTC 59 10738647 10738667 ATAGAAGACCGGAATGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 1 8 9 94 X 10692567 10692660 GAATAAGGGTGAAATTTGCC 57 10692492 10692510 GCATGATCCGTTTAATGGT 58 NA Drosophila melanogaster 50 CG2124 FBgn0030217 FBtr0071491 3 1 1 60 X 10491683 10491702 CAATTACACGCAGTACATCC 58 10491725 10491743 ACGATCGGTATTATTCAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32685 FBgn0052685 FBtr0071489 2 1 1 84 X 9967962 9967981 TACATCAAACTGGACGTGAG 59 9967432 9967915 ATGCATTATCGTCCGTAGC 59 NA Drosophila melanogaster 50 l(1)G0232 FBgn0028341 FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407 3 6 6 85 X 9524046 9524066 GCCGTCGGATTATATTAATGC 59 9523916 9524001 TCTTTGGTAATGGACCTTGAG 59 NA Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274 3 10 10 166 X 8768356 8768374 GAGGATGAGAACGAGAACG 59 8768131 8768227 TCTTGTTTCAGAGCCTTGAG 59 NA Drosophila melanogaster 50 Ogg1 FBgn0027864 FBtr0071223 3 1 1 154 X 8585439 8585460 CCGTCGACATTCATATTTACAG 59 8585574 8585652 AAAGAGAATAGCTTGAGCCC 59 NA Drosophila melanogaster 50 CG11190 FBgn0030035 FBtr0071175 2 1 1 60 X 8299848 8299868 CTATTCCGTCTACGATATGCA 59 8299808 8299826 GACATTAAACAGCCGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubc-E2H FBgn0029996 FBtr0071114,FBtr0071112,FBtr0071113 1 3 3 62 X 7983587 7983605 GCGTTGTACGATCTATCGA 59 7983543 7983561 ATTGGGATATGTGAGCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0155 FBgn0026664 FBtr0071093 3 1 1 85 X 7815075 7815095 CGCTTATCACAAAGATTCTGG 59 7815142 7815160 AAATGAGATAGTGGCCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18624 FBgn0029971 FBtr0071140,FBtr0071141 1 2 2 104 X 7787312 7787330 GTCTTGGGACTGGATAAGC 59 7787226 7787244 GAACATGGTCATACGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34417 FBgn0085446 FBtr0112705,FBtr0112704 2 2 5 85 X 6481126 6482106 CAGGAATATGAGAACGTCC 57 6482155 6482173 AAGAAATGGTGTATCAGCG 57 NA Drosophila melanogaster 50 CG34417 FBgn0085446 FBtr0112706,FBtr0112707,FBtr0112704 3 3 5 89 X 6448796 6448951 CACCACCAGATAACAAGCT 59 6449002 6449022 TAGTAGGAGGAGTAGTTGGTG 59 NA Drosophila melanogaster 50 CG4119 FBgn0028474 FBtr0070799 3 1 1 99 X 5563172 5563190 AAGAAGATAGAGGCCACAG 58 5563253 5563346 TATCATCGTAGTCTAGCGG 57 NA Drosophila melanogaster 50 Rnp4F FBgn0014024 FBtr0070752,FBtr0112876,FBtr0112875,FBtr0070753 2 4 4 80 X 5214528 5214600 AAATAATGGGCTATCCGGG 59 5214466 5214485 CACCATTGTATTCGCTTTCC 59 NA Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070738,FBtr0070739,FBtr0070740,FBtr0100408 2 4 4 238 X 4962659 4962677 GATTCAACGACACCTTCGA 59 4962975 4962993 CTTCAGGTGCAGATAGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12688 FBgn0029707 FBtr0070653 1 1 1 70 X 4275985 4276003 GACCAAGAAGATCCAAGCA 59 4277107 4277125 TCGGAGTGTCCTCTAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514 3 9 14 87 X 3215172 3215190 CGTTTCTATATCGCTCCGA 59 3215240 3219968 TCTTTAAACCTTTCGCTAGC 58 NA Drosophila melanogaster 50 boi FBgn0040388 FBtr0070458,FBtr0070457 1 2 3 147 X 2340562 2340580 AAGCGGACTTTGTTACCTC 59 2339616 2340452 CCAGAGTTGTTCTTATCGGA 59 NA Drosophila melanogaster 50 CG4199 FBgn0025628 FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070337,FBtr0070333,FBtr0070335 2 6 6 60 X 1961216 1961235 TAAATCGTAACGGATCCGTG 59 1961175 1961193 TACACATCGGGTACATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nmdar2 FBgn0053513 FBtr0070288,FBtr0091454,FBtr0091453 1 3 3 130 X 1385972 1386200 GGGAAGAGATTGGAGTGTG 59 1385860 1385881 GAGGAATGTGATCTTCAAATGG 59 NA Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 3 8 8 61 X 551391 551410 CATTATCTCATGGGATGCAG 58 551433 551452 ATATCAGCTCAAACAGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SP71 FBgn0029128 FBtr0100136,FBtr0100135 2 2 2 81 X 94411 94493 GCTATGATGTTTCTGTTCACTG 59 94535 94553 TAAATGCGTCCATTGAACG 58 NA Drosophila melanogaster 50 CG40769 FBgn0085516 FBtr0113929 2 1 1 135 U 8483497 8483516 ATCCGTACCAGAAGTTTCTG 59 8483381 8483399 AAATGTGGTGACAGGAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40820 FBgn0085523 FBtr0113936 1 1 1 112 U 7044868 7044886 GTTGTACGGCATGATTCAC 59 7043624 7043642 TAATCGATAGTGGGCTTGC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG32016 FBgn0052016 FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232 1 6 6 82 4 974520 974659 GCACTACTCTCAAGAATTGC 58 974457 974475 GAGTTGGAGAGTTACCGTG 59 NA Drosophila melanogaster 50 CaMKI FBgn0016126 FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065 3 6 7 103 4 467819 467838 GAAAGGAAGAATCTCTGGAG 57 470592 470883 ATTTGGATGAGTTAACCGC 58 NA Drosophila melanogaster 50 CaMKI FBgn0016126 FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065 2 6 7 96 4 467853 470559 TTTGAGAAGGTTCAGTGCA 59 470889 470910 CTCATACGTTTCTAAGAGTTGC 59 NA Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450 2 8 8 166 4 157780 157853 TCGAGCAACCTTAAGACAC 59 158041 158059 TAAACCAATTGCTTGCAGC 59 NA DesignRelaxed Drosophila melanogaster 50 snoRNA:Psi18S-1295 FBgn0083055 FBtr0113584 1 1 1 60 3R 16648403 16648422 CAGAATCGGACATTATTCCC 58 16648444 16648463 CCTGAACCATGTGATATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bxd FBgn0020556 FBtr0083344 1 1 4 60 3R 12571323 12571343 CGATCTTATTAGCATTCGCAG 59 12571283 12571302 AAATTGGGCGTTCTAATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 2 14 14 109 3R 27690344 27690863 AAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 1 14 14 90 3R 27691897 27691915 ATACTGCACCAGATCTTCC 58 27691743 27691843 GATATTGGATGAGGGCCTG 59 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 3 14 14 90 3R 27691897 27691915 ATACTGCACCAGATCTTCC 58 27691743 27691843 GATATTGGATGAGGGCCTG 59 NA Drosophila melanogaster 50 rod FBgn0003268 FBtr0085795 2 1 1 80 3R 27411998 27412017 TTATGCCGAAGATATCTCGA 58 27412059 27412148 GTTCGCTGTCAAGAATATCC 58 NA Drosophila melanogaster 50 zwilch FBgn0061476 FBtr0085777 2 1 1 95 3R 27037281 27037361 CTGGCAAATGTTTACAACGA 59 27037205 27037225 GTCCATAACATCACTTAGCTG 58 NA Drosophila melanogaster 50 Ctr1C FBgn0062411 FBtr0085750,FBtr0085749 3 2 2 60 3R 26789705 26789723 CACTGACTCTTTCTTGCCT 59 26789663 26789682 AATTTCAGGGCCTCATAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31036 FBgn0051036 FBtr0114571,FBtr0085501 2 2 2 80 3R 25736317 25736401 AAATCTGAACCCTACATCAGG 59 25736442 25736461 GTTAAAGAATCCAGCCTGTC 58 NA Drosophila melanogaster 50 CG7598 FBgn0039689 FBtr0085473 2 1 1 60 3R 25563431 25563452 TCTACCACTATGTTCTGTACAC 58 25563472 25563491 AAGGGAATCTTCGCTATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2010 FBgn0039667 FBtr0085427 3 1 2 129 3R 25321408 25321426 TCCAAATCGCGAACTAGAG 59 25321519 25322735 AGCTTCTCAATGGTCAGTC 59 NA InUTR Drosophila melanogaster 50 CG5611 FBgn0039531 FBtr0085199 2 1 1 63 3R 23460978 23460996 AATGCCTACAACAAACCAG 58 23460933 23460954 CTGAGGTAACATTCATGATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TfIIA-L FBgn0011289 FBtr0085155,FBtr0085156,FBtr0085154 3 3 3 93 3R 23081685 23081766 ACGATAAGATCACCAGGTC 58 23081822 23081841 GATTTCTGGAACACGTAGTC 58 NA Drosophila melanogaster 50 CG14550 FBgn0039405 FBtr0084974 3 1 1 151 3R 21883447 21883465 CCTCGTATACGTGACTTGG 59 21883314 21883333 TCGATAGATTTATGGCAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14545 FBgn0040602 FBtr0084913 2 1 1 61 3R 21676487 21676505 GAGAGCATTGAGACTACGA 58 21676444 21676462 GACATCGGTGTACATAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5028 FBgn0039358 FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290 2 5 5 107 3R 21507673 21507691 ACATGACCAATCTGTACGG 59 21507762 21507839 CAAAGATGGCGTAATGGTC 58 NA Drosophila melanogaster 50 Fur1 FBgn0004509 FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986 1 5 6 103 3R 21180026 21181954 GCTATATGGCACAAATCACAC 59 21179943 21179961 ATTGAACTGGTTCGACTGG 59 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0084683,FBtr0100635,FBtr0084685 1 3 17 91 3R 20521093 20521111 GGACATTAAGGACGAGACG 59 20521837 20527818 GGTGTTCATCTAAGTCATCGA 59 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 3 5 6 83 3R 20045868 20045949 CTAGAGATTACTGGCTGCG 59 20045803 20045821 GTTGTCGTTCAGGTAGAGG 59 NA Drosophila melanogaster 50 AP-1sigma FBgn0039132 FBtr0084496 3 1 1 99 3R 19785068 19785086 CATTCATCGCTATGTGGAG 58 19785214 19785234 CTCATCCAGGATAAAGTATGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG33111 FBgn0053111 FBtr0084529,FBtr0084530,FBtr0100312 3 3 3 121 3R 19633221 19633304 AATTCACAATCTCACCAGC 58 19633118 19633136 GGATCTTGAAGAGCTTTCG 58 NA Drosophila melanogaster 50 CG10175 FBgn0039084 FBtr0084423,FBtr0084421,FBtr0084422 2 3 3 98 3R 19350515 19350588 ACAGGAGCAAGAAGATTCC 59 19350435 19350453 CATGTTCTTATGCGGACAG 58 NA Drosophila melanogaster 50 wge FBgn0051151 FBtr0110835,FBtr0084329,FBtr0084328 3 3 3 86 3R 18539557 18539638 CAAGGATACGATCCTCGAG 59 18539489 18539507 TACTGCTGACTCCAGTAGG 59 NA Drosophila melanogaster 50 CG7084 FBgn0038938 FBtr0084202,FBtr0084201 3 2 2 90 3R 18128384 18128492 CTATATGGGCGATACGTACG 59 18128545 18128563 CGAATACACAATGATGGGC 58 NA Drosophila melanogaster 50 CG6439 FBgn0038922 FBtr0084190 1 1 1 156 3R 17843782 17843800 GACTTCGAGTGCTACTTCC 59 17843587 17843605 TCATGTTAAGGGTCTGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 1 22 22 84 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202454 17202549 TTCAGGAATACGATAGCGT 58 NA Drosophila melanogaster 50 Calx FBgn0013995 FBtr0083999,FBtr0084000,FBtr0083998 2 3 3 146 3R 16838011 16838032 CTTTGTGGTATCCATATTCGTG 59 16838139 16838225 GCGAATGTATCTGGTATGC 58 NA Drosophila melanogaster 50 CG17199 FBgn0038775 FBtr0083874 1 1 1 60 3R 16034201 16034219 CAACACATGAAGATGGTCG 58 16034159 16034177 CTGACAGAGTACAGGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14299 FBgn0038651 FBtr0083681 2 1 2 80 3R 14578389 14578469 GCTATTGGCTGATCAAATCAG 59 14578329 14578348 TCGGTATATGGGATTAGCCA 59 NA Drosophila melanogaster 50 CstF-64 FBgn0027841 FBtr0083660 3 1 1 60 3R 14485969 14485987 GCTAATGCTCAATCCTCAG 57 14486010 14486029 GATCCTCATAACCACCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 koko FBgn0051232 FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629 3 5 5 84 3R 14229544 14229623 TACGATGAGTTCCTCATTGC 59 14229670 14229688 TGACATCGCGTATCTTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 repo FBgn0011701 FBtr0083564 3 1 1 71 3R 14063741 14063759 TACATCAAGACGAGCACTC 59 14063794 14063812 GTAGCTAGTGAATGGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8907 FBgn0038466 FBtr0083372 1 1 1 107 3R 12835620 12835699 TAAAGACGCTAAGCAAGGG 59 12835770 12835788 CATACTGATCCTTGGCCTG 59 NA Drosophila melanogaster 50 CG31274 FBgn0051274 FBtr0083369 1 1 2 84 3R 12819313 12819331 ACACTTTAATCCTGGACCG 59 12819378 12819461 TTGTTGATCCACAAGATCCT 58 NA Nonspecific Drosophila melanogaster 50 Ahcy89E FBgn0015011 FBtr0083378,FBtr0083379 1 2 2 123 3R 12804736 12804817 ATTGATGTGAATGGCTTGC 59 12804631 12804649 AATTCACCAGTCTTCCCTC 58 NA Drosophila melanogaster 50 Rbf2 FBgn0038390 FBtr0083213 2 1 1 60 3R 11792939 11792959 GAGCTAAATCAAAGACTTCCC 58 11792979 11792999 TCTCCTTGTCTTCTGTTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204 2 6 8 195 3R 11782022 11785052 GACTGATGAGGAACAATGG 57 11785211 11785229 CCAATCGTTGTTAGTCGAG 58 NA Drosophila melanogaster 50 CG5302 FBgn0038351 FBtr0083149 3 1 1 82 3R 11463090 11463273 TCTGATCACGAATCAGTAGC 59 11463312 11463336 CTATAGGTACAGTAACTATCGTGAC 59 NA Drosophila melanogaster 50 CG18519 FBgn0038348 FBtr0083153 3 1 2 92 3R 11366295 11366382 GATCTTATAAGATCTTGCCCAG 58 11366224 11366242 CAATCCTGTGCTGAATGTC 58 NA Drosophila melanogaster 50 CG14870 FBgn0038342 FBtr0083145 2 1 1 72 3R 11307885 11307903 TTTAGTTTGAGCATCGTGG 58 11307939 11307957 GGAAGACGAACTCCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31303 FBgn0051303 FBtr0083047 3 1 1 141 3R 11026449 11026469 CAAGCGAAAGAATAGCAACTC 59 11026571 11026590 GTTATTGAGATGATTGCGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gyc88E FBgn0038295 FBtr0083028,FBtr0083027,FBtr0110961 3 3 3 116 3R 11013199 11013217 TTCAGCAGAGATCTCATGC 59 11013295 11013377 CTCATCCAACAATCTCATGGA 59 NA Drosophila melanogaster 50 CG6904 FBgn0038293 FBtr0083037,FBtr0083035,FBtr0083036 2 3 3 95 3R 10968577 10968689 CTGGGCATTTACTACAGAC 57 10968500 10968520 GTTGTTCTTCGATCCATAGAG 58 NA Drosophila melanogaster 50 dpr9 FBgn0038282 FBtr0089376 1 1 1 80 3R 10888195 10888854 CTGAATGTCGTTGAACCCT 59 10888133 10888154 GGTAAGGTTTATAGTGGAACCA 59 NA Drosophila melanogaster 50 Nsf2 FBgn0013998 FBtr0082883 1 1 1 155 3R 9663228 9663246 ATCATCACACTGGTCTCCT 59 9662456 9663111 GTCTTTGAACTGAAAGACGAG 59 NA Drosophila melanogaster 50 CG9611 FBgn0028487 FBtr0082846,FBtr0112939,FBtr0082847 1 3 5 157 3R 9522676 9522694 AAGACTCTGCACGATAGAG 58 9522057 9522557 CGTAGTTTGTATCTATCCGGA 58 NA Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 3 8 8 284 3R 9504401 9504476 ACACGACGTAAATCAGGAG 59 9504723 9504742 TTTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG7966 FBgn0038115 FBtr0082715 2 1 1 81 3R 8875356 8875444 TGGGATAAGCAGTTCTATCC 58 8875294 8875312 TTCCTCCATTCACAGTGTC 59 NA Drosophila melanogaster 50 granny-smith FBgn0040493 FBtr0082728,FBtr0082730,FBtr0082729 2 3 3 122 3R 8785059 8785077 TAGGGATAACTTGCATGCC 59 8784891 8784910 GCATCCGTGTTATTGATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4830 FBgn0037996 FBtr0082625 3 1 1 91 3R 8035668 8035686 ACCTACATTATGCCCACAG 59 8035483 8035615 TGCTTAAGAGTAGATTCCTCG 59 NA Drosophila melanogaster 50 ninaG FBgn0037896 FBtr0082404 3 1 1 93 3R 7245310 7245473 GTAGATGCTAGTGTACTACCC 58 7245237 7245255 TCTTCAGAATCCAAGAGGC 58 NA Drosophila melanogaster 50 CG17721 FBgn0037885 FBtr0082354 1 1 1 60 3R 7061432 7061451 TATTCCCATAGAAAGTGCCT 58 7061474 7061492 AGTCACCGGCTATATTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp12e1 FBgn0037817 FBtr0082249 2 1 2 106 3R 6261642 6261660 TTGGTTTGGAAACTAGCCT 59 6261730 6261806 TACAAGAGTAGGATCCGCT 59 NA Drosophila melanogaster 50 topi FBgn0037751 FBtr0082135 1 1 1 91 3R 5602336 5602354 GCTTAGTCGCTACTTTGTG 58 5602468 5602487 AGTAGTGAAAGGAGGTACAC 58 NA DesignNoJunction Drosophila melanogaster 50 MED6 FBgn0024330 FBtr0082162,FBtr0082161 3 2 2 99 3R 5592834 5592906 CATCTGCACAACATGATCG 59 5592753 5592771 CTTCCGAGGGATTATGACG 59 NA Drosophila melanogaster 50 CG8043 FBgn0037610 FBtr0081902 2 1 1 63 3R 4503760 4503778 ATCGAGAAGGTTCTCAACG 59 4503805 4503823 GTTCAACATAACAGCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DppIII FBgn0037580 FBtr0081840,FBtr0081841 2 2 2 179 3R 4171063 4171081 AGATTCCTGTTCTTAGGGC 58 4171282 4171301 CGGATGCCTTTACTATAGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG9603 FBgn0040529 FBtr0081855 1 1 1 141 3R 4166245 4166263 GAGTGTTCCCAAGAAGGAG 59 4165784 4165802 ATGTTGTCCAGGTATCCAG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7878 FBgn0037549 FBtr0113205 2 1 1 90 3R 3949751 3949771 AATGGAGGTCAAGAAGTACTC 59 3949885 3949903 CTCCAAGTCGGATATCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Antp FBgn0000095 FBtr0081652,FBtr0081650,FBtr0081647,FBtr0081654,FBtr0081653,FBtr0081655 3 6 11 159 3R 2724257 2734249 TTGGTAAGTGTCAAGAACG 57 2724116 2724134 CAAATCTTTATCTGGCGCT 58 NA Drosophila melanogaster 50 Pi4KIIalpha FBgn0037339 FBtr0078756,FBtr0078755,FBtr0078757 2 3 3 162 3R 1385036 1385113 CCTTCCTCTAAAGACTGGC 59 1384892 1384913 GTTGCGTATGATATAATCGAGC 59 NA Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078812 1 1 15 117 3R 1118452 1118470 GATTCAAGAGGACACCGAG 59 1117793 1118373 CTTTATAAGCTCCCAGGACTC 59 NA Drosophila melanogaster 50 snoRNA:Psi28S-2566 FBgn0086661 FBtr0091666 1 1 1 66 3L 18889359 18889377 GTTGAATTACCTGAGTGGG 57 18889311 18889329 AATTAGATGGTTTGCAGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nrm FBgn0005629 FBtr0111148 3 1 2 111 3L 23017168 23017187 TTATCATACTGGTTGCTGCT 59 23017259 23018195 TCCGTGAGATATTTATCCTGG 58 NA Drosophila melanogaster 50 Arf79F FBgn0010348 FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572 2 6 7 85 3L 22862823 22862841 TTAGCTTTACAGTGTGGGA 58 22862563 22862777 GATAAGACCTTGTGTATTCTGG 58 NA Drosophila melanogaster 50 mael FBgn0016034 FBtr0089631,FBtr0089633,FBtr0089632 1 3 3 117 3L 22718019 22718093 GATGTCCCATGATCTGGAG 59 22718174 22718192 CAACGAATATTCGCATGCC 59 NA Drosophila melanogaster 50 CG14456 FBgn0037176 FBtr0078518 3 1 1 84 3L 22680635 22680653 AGGACATCAAGTTCTGGAG 58 22680701 22680719 ATGGAGAAGTTCAGATGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hr78 FBgn0015239 FBtr0078392,FBtr0078390,FBtr0078389,FBtr0078391 3 4 4 80 3L 21488570 21488706 GACATTGATGTTCGCTACC 58 21488508 21488527 GGAATATCTGGCGAATAGCT 59 NA Drosophila melanogaster 50 Hr78 FBgn0015239 FBtr0078392,FBtr0078390,FBtr0078389,FBtr0078391 2 4 4 80 3L 21488570 21488706 GACATTGATGTTCGCTACC 58 21488508 21488527 GGAATATCTGGCGAATAGCT 59 NA Drosophila melanogaster 50 CG5274 FBgn0036987 FBtr0078232,FBtr0078231 3 2 2 67 3L 20420641 20420660 CGATAGACAGCAATAAGCTC 58 20420593 20420614 CGCACAAGTTGGATAATTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5282 FBgn0036986 FBtr0078233 2 1 1 178 3L 20418118 20418136 TGGAGATTTCGATGCTCAG 59 20417905 20417923 CAGGTTGAGCAAGATTACG 58 NA DesignNoJunction Drosophila melanogaster 50 Csas FBgn0052220 FBtr0074911 1 1 1 80 3L 19981544 19981564 CCAAGTATATTCAAGAGGCTG 58 19981429 19981503 ATCGCAGATAATGTGATCTC 57 NA Drosophila melanogaster 50 CG34258 FBgn0085287 FBtr0112452 1 1 1 113 3L 19944749 19944767 ATAGTTATCCGGACTGCCT 59 19944600 19944618 AGAACTTCCTTCCGATCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14104 FBgn0040786 FBtr0074926 1 1 1 63 3L 19800183 19800201 AATGAAACGTCAGAGGGTC 59 19800138 19800156 TTAGGTCGTTGTACTCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075007 2 1 11 127 3L 19300104 19300122 ACACAAATGTGACATTGGC 59 19299933 19299951 ATCCAGATGAGTGTCATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4174 FBgn0036793 FBtr0100567,FBtr0075111 3 2 3 256 3L 18594641 18594659 GACTCCTATGCCATGACTG 59 18594292 18594372 AAATAGTGACCAAGTCCCT 57 NA DesignRelaxed Drosophila melanogaster 50 CG7271 FBgn0036791 FBtr0075101 3 1 1 95 3L 18581872 18581892 CAACTGAACCTTGTCATAGAC 58 18581946 18581967 GTCGAACATGATTGAGATATGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 star1 FBgn0036790 FBtr0089578 1 1 1 80 3L 18567824 18567907 GGTACTGACGGTGATAAGTG 59 18568006 18568024 GGATTCGAGTGAATCAGGG 59 NA Drosophila melanogaster 50 CG32182 FBgn0052182 FBtr0075188 3 1 1 60 3L 17751815 17751833 AGAGGTACCAGTATCCCAG 59 17751857 17751875 GCGGTAATCATACAAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sec3 FBgn0086475 FBtr0075231 1 1 1 82 3L 17415683 17415701 AGTGTTATAACGATGCGCT 59 17415541 17415639 GCCTTCGAAGAATTGATTCAG 59 NA Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 1 8 8 118 3L 16956803 16956821 AAGACCCATTGAAGGTAGC 59 16956901 16956979 CAATAGACCCTTGTGAATCAC 58 NA Drosophila melanogaster 50 CG4729 FBgn0036623 FBtr0075417,FBtr0075419,FBtr0075418 3 3 4 82 3L 16377075 16377093 ATCAAGCCCATAGACAAGC 59 16376951 16377030 GACACGAAGATAAGTTGGGA 59 NA Drosophila melanogaster 50 CG33257 FBgn0053257 FBtr0075378 2 1 1 60 3L 16339813 16339831 GGAATGGCTATCACTACCG 59 16339855 16339873 TCAAAGTAACCACCTTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32147 FBgn0047178 FBtr0075647 2 1 1 60 3L 15136475 15136494 TGAAATCGCTCGATATGGAC 59 15136434 15136454 CTATCTACAGGAGGTACATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5114 FBgn0036460 FBtr0075624 3 1 1 90 3L 14977140 14977158 CAGGATATCCATCTGGGAC 58 14977210 14977320 CCATTTGATCCTTATGACAGC 59 NA Drosophila melanogaster 50 shd FBgn0003388 FBtr0075675,FBtr0075676 1 2 2 90 3L 14613774 14613794 GAATATTCTGGAGCTCAAGGA 59 14613845 14613921 GTTGGCTAACGTTTCTATGC 59 NA Drosophila melanogaster 50 CG9592 FBgn0036426 FBtr0075717 1 1 1 60 3L 14511291 14511309 TCAAGATGATCCGACTTCC 58 14511332 14511351 ATATTCCTTACGGGTAGGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 toe FBgn0036285 FBtr0075980 3 1 1 196 3L 12416969 12416987 AACATGAGCTCAAATCCCA 59 12416725 12416811 CCTTCGATATCTATCATCCGA 58 NA Drosophila melanogaster 50 CG32104 FBgn0052104 FBtr0075986 1 1 1 80 3L 12391118 12391136 TATTTACATGGCGAGGAGG 58 12390990 12391074 CTGTAAGACGGTGGATCTG 59 NA Drosophila melanogaster 50 RhoGAP68F FBgn0036257 FBtr0075997 1 1 1 89 3L 12134437 12134455 GTTTGATGATACCGAGCTG 58 12134571 12134646 TCAAGTTCTGGATCTTCGG 58 NA Drosophila melanogaster 50 rols FBgn0041096 FBtr0076054,FBtr0076055,FBtr0076057,FBtr0076056 3 4 5 195 3L 12021963 12048296 TAGATCTCCAGTCCATCCG 59 12020252 12021804 CCATCAACATCTTTCAGCG 59 NA Drosophila melanogaster 50 CG7351 FBgn0036184 FBtr0076102 2 1 1 60 3L 11620408 11620426 TTTCTCGATCTGGCTATGG 58 11620449 11620468 TGACAATCTCATCAAAGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32082 FBgn0052082 FBtr0076216,FBtr0113423,FBtr0113422 3 3 3 109 3L 11152568 11152586 AGTGGATACAGTACCAGCA 59 11152659 11152872 TCCTTAATTCGTTCCAGGC 59 NA Drosophila melanogaster 50 Mnf FBgn0036134 FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228 2 5 5 143 3L 11109449 11109535 ACAATACACAGGATCTGTTCC 59 11109326 11109344 ACGAATAAATGCCCGAGAG 59 NA Drosophila melanogaster 50 CG8065 FBgn0036075 FBtr0076296 2 1 1 69 3L 10209611 10209631 AACTTCCATCTATATCGGAGC 59 10210143 10210162 ATTTCATCAGATCGGAACCC 59 NA DesignNoJunction Drosophila melanogaster 50 RpS9 FBgn0010408 FBtr0076423,FBtr0076424 1 2 3 162 3L 9504210 9504228 CTGGCTAAGATCCGTAAGG 59 9503662 9503680 CCTCAATCTTCAGACCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 orb2 FBgn0035938 FBtr0076563,FBtr0076561,FBtr0076564,FBtr0076562 3 4 4 60 3L 8936313 8936334 CGGAATTAAAGTATCCAAAGGG 59 8936274 8936292 ATGTAGCTCTGCTGATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 foi FBgn0024236 FBtr0076624 1 1 1 98 3L 8525887 8525905 CATTGCCTTTGGACAATCG 59 8525966 8526051 ATCTCTGGCATCATATCGAC 59 NA Nonspecific Drosophila melanogaster 50 se FBgn0086348 FBtr0076623 2 1 1 96 3L 8514299 8514319 GTGGAGAGGATTATAACTACG 57 8514434 8514452 ATGTAGAAGGCCATCACAG 59 NA DesignNoJunction Drosophila melanogaster 50 DNApol-alpha50 FBgn0011762 FBtr0076603 3 1 1 81 3L 8336219 8336295 CTATCGTATGGATCATCCGAG 59 8336335 8336356 AACGTATGTAGATATCGTCCTG 59 NA Drosophila melanogaster 50 nmo FBgn0011817 FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758 1 6 6 141 3L 8040250 8040352 GTCTTCGATCCGGATAAGC 59 8040457 8040475 AATCAGCCGTATACTGACG 59 NA Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076777,FBtr0076779,FBtr0076780 1 3 8 163 3L 7811314 7813096 AATCAAACGGCAAATCCAC 59 7811169 7811187 TTGTGTTACCTTGAGGTCG 59 NA Drosophila melanogaster 50 CG32369 FBgn0052369 FBtr0076783 2 1 2 97 3L 7774094 7774115 GAAGTTCTTCTTAAACTGAGCC 59 7773960 7774036 CTTAAGTAGTGGGCCTTGG 59 NA Drosophila melanogaster 50 CG8543 FBgn0035787 FBtr0076863 2 1 1 60 3L 7463067 7463085 CCAACAATGTCTACACTCC 57 7463025 7463043 GACTTGGTGATCACTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 unc-13-4A FBgn0035756 FBtr0076887 2 1 1 80 3L 7262828 7262846 GTGGTCATTGAACTACTGC 58 7262643 7262786 GTTAAGAGTACGCTTATGCAC 59 NA Drosophila melanogaster 50 RpL18 FBgn0035753 FBtr0076892 3 1 1 117 3L 7234013 7234031 TCAACCACAAGTACGATCG 59 7233837 7233855 TTGAACTTCTTGTTGGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32392 FBgn0052392 FBtr0076948,FBtr0076947 1 2 2 263 3L 6750546 6750628 AACAGGAAGAATTCCTGGC 59 6750301 6750319 AGACGCTCTTCATAAGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 SP1173 FBgn0035710 FBtr0076960,FBtr0076959,FBtr0076958 2 3 4 88 3L 6685394 6685480 TAATAACCGGTCTTACAGCT 58 6685325 6685343 AGTAATGGTCCGGTATTCC 58 NA Drosophila melanogaster 50 CG8398 FBgn0035708 FBtr0076980,FBtr0076979,FBtr0076981,FBtr0076978 2 4 4 93 3L 6609616 6609634 AAGCACTTCATTCCCTACC 59 6609688 6609779 TGCAGTAGATTATCAGATCTGG 59 NA Drosophila melanogaster 50 CG18769 FBgn0042185 FBtr0076973,FBtr0076970,FBtr0076972,FBtr0076971 3 4 6 164 3L 6544995 6545013 CACCACCCATAGAAGTCTC 59 6555513 6583716 ACATAGATGTCTTCTCCCG 58 NA Drosophila melanogaster 50 CG32406 FBgn0052406 FBtr0077037 2 1 1 100 3L 6012866 6012884 ATAAGCCGCAAGACTAGTC 59 6012947 6013168 TCATTGCAATTGAGATTCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG18418 FBgn0035568 FBtr0073366 3 1 1 60 3L 4689695 4689714 TGTTTACCAGATGGAGTTGG 59 4689654 4689675 CACCATAGATGGATAATTTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dyl FBgn0066365 FBtr0073343 3 1 3 241 3L 4299005 4299026 GCTTAATGACGACCATAAAGTC 59 4298551 4298569 CAGGACTATGGCCATTAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Gad1 FBgn0004516 FBtr0073276,FBtr0073277,FBtr0073275 2 3 3 80 3L 4082635 4084743 ACTGACGGCATATGATCTC 58 4082573 4082592 ACATCGATTACCTTCAGCAG 59 NA Drosophila melanogaster 50 Faa FBgn0016013 FBtr0073278 1 1 1 70 3L 4073174 4073192 AAGGGTTCAGAATTGGACC 59 4073062 4073080 AGCTTGATCTCAGACTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11526 FBgn0035437 FBtr0073083,FBtr0073084 3 2 2 105 3L 3322982 3323003 GATTACTTCAAGGCCAATTACG 59 3322831 3322916 ATATTAGAGCAGCGATGGC 59 NA InUTR Drosophila melanogaster 50 BtbVII FBgn0012049 FBtr0073025,FBtr0073024 1 2 2 80 3L 3150144 3150225 GTACTTTCAGGCTTTGTTCAC 59 3150266 3150285 TTTAGGTCATCGTACTGCAC 59 NA Drosophila melanogaster 50 CG14955 FBgn0035399 FBtr0073123,FBtr0073122 1 2 2 80 3L 3111110 3111337 GACTACTATGTGGATCAATTGC 58 3111051 3111069 CCAGGACAAAGAATTAGGC 58 NA Drosophila melanogaster 50 Jafrac2 FBgn0040308 FBtr0072982,FBtr0072983 2 2 2 92 3L 3043306 3043327 CGTGGTTAATAAGGAGATTGTG 59 3043380 3043449 ACAAAGGTGAAGTCCAGTG 59 NA Drosophila melanogaster 50 Pxn FBgn0011828 FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951 2 4 5 110 3L 2607769 2607787 GTCAAGAATGTGACCATCC 58 2604264 2607695 CAAATCCACGTTGTTTCTG 57 NA Drosophila melanogaster 50 ecd FBgn0000543 FBtr0072903 3 1 1 60 3L 2263756 2263776 ATGATGGATAGCTACCAATCG 59 2263716 2263736 CGCTAAACAGATTGGATACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1275 FBgn0035321 FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906 1 4 4 62 3L 2253685 2253787 GTATGGCAACTCCATTCTG 58 2253641 2253659 AGCTTCAGAGTCTTCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13921 FBgn0035267 FBtr0072772 1 1 2 164 3L 1748010 1748030 GATTCTGGACGATAATCATCG 58 1748360 1748435 GTGACACGAAATAGCACTG 58 NA Drosophila melanogaster 50 Psa FBgn0035226 FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697 2 6 6 114 3L 1520666 1520684 TGAGACCTTTGTGCTAGTG 59 1520761 1521150 CATAGTTACCAGATTGCCGA 59 NA Drosophila melanogaster 50 CG13912 FBgn0035186 FBtr0072625 2 1 1 70 3L 1190004 1190023 GATCACAGGTACTTGACCTC 59 1190056 1190074 GAATTCTGTCGAGAGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trio FBgn0024277 FBtr0072648,FBtr0072646,FBtr0072645,FBtr0072649,FBtr0072644,FBtr0072647 3 6 6 80 3L 998876 998894 CCGAATACATAGTCAGTGC 57 998722 998832 AGTTACTCAGATCCAGACG 58 NA Drosophila melanogaster 50 E(bx) FBgn0000541 FBtr0072522,FBtr0072521 3 2 3 136 3L 235006 235024 AAATGACGTTGAAGAGCTG 58 234496 234577 GTTTGAGATCCATTGGCTC 58 NA Drosophila melanogaster 50 thoc7 FBgn0035110 FBtr0072527 2 1 2 126 3L 212541 212620 ACGAAATCATAAAGCAGCG 58 212368 212452 TACATGATGGGATTGCTGTC 59 NA Drosophila melanogaster 50 snoRNA:U3:54Ab FBgn0065047 FBtr0091605 1 1 1 64 2R 13033162 13033181 ACATACTTTCACACTAGCTG 57 13033206 13033226 CCGAATAGAACGATTCAACTC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33426 FBgn0053426 FBtr0086418 1 1 1 62 2R 15626794 15626812 AATACATCGGTTCTCGTCC 59 15626750 15626768 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2857 FBgn0035078 FBtr0072419 3 1 1 60 2R 20787609 20787627 TGGTAAGAACACAGATGGT 58 20787567 20787585 AAAGTGTTCATCTGACTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yki FBgn0034970 FBtr0072183,FBtr0072184 2 2 3 156 2R 19953829 19954697 TAAAGCAGAATGAATCTGGG 57 19953609 19953627 TACCATTCCAAATCGTCAG 57 NA Drosophila melanogaster 50 Obp59a FBgn0034766 FBtr0071869,FBtr0071870 1 2 2 74 2R 18590241 18590259 TGCTGATTTGTTTGAGCTG 58 18590297 18590315 CTTCACTTAGTCCCTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wdp FBgn0034718 FBtr0071851 2 1 4 175 2R 18198686 18198705 GAATAATACGTACTCACGCA 57 18188505 18195724 GGCGTCTTATCTTCTATAAGAC 57 NA InUTR Drosophila melanogaster 50 dve FBgn0020307 FBtr0071776,FBtr0071775 1 2 2 126 2R 18168265 18168283 CCAATATCGAGACCGACAG 59 18168373 18168504 ATTAATGAGCCTCTGGCTG 59 NA Drosophila melanogaster 50 synj FBgn0034691 FBtr0071757,FBtr0071756 3 2 2 183 2R 17969982 17970000 GGTTTGAGGAGATCTTCCG 59 17970214 17970232 ACTAGCAGGACATCAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6393 FBgn0034685 FBtr0071752,FBtr0071751,FBtr0071750 2 3 4 81 2R 17956169 17956254 GATAATTGAATTCCCAGCAGTG 59 17956296 17956314 GAAGGGAAGGATGTACTGG 59 NA Drosophila melanogaster 50 rig FBgn0050149 FBtr0086252 3 1 1 107 2R 16522537 16522555 CTTACAGAAGACTCTGCCA 58 16522389 16522466 CTTCAGATTGGTCAACTCG 58 NA Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457 1 11 15 108 2R 15365201 15366256 TTCACTCTGGTCAAACCAG 59 15366328 15366346 TTGGAGAAGAAGCTCATGC 59 NA Drosophila melanogaster 50 CG7137 FBgn0034422 FBtr0086505 3 1 1 60 2R 15115660 15115678 CATCACGGATACTCCACTC 59 15115702 15115720 TAGTGAGAGGCAGTATACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5-HT1A FBgn0004168 FBtr0086578,FBtr0086577 3 2 2 145 2R 14978951 14981552 GTCACCATAATTGGCAATGTC 59 14981659 14981677 TCGTATACAGCTCCTAGGG 59 NA Drosophila melanogaster 50 CG18536 FBgn0034322 FBtr0086758 1 1 1 101 2R 14182690 14182764 TGAGGAAACGATGGTTGAG 59 14182829 14182847 TCATAGAAGGGCTGTTTGG 59 NA Drosophila melanogaster 50 sbb FBgn0010575 FBtr0086765 3 1 3 91 2R 14170893 14170911 CAACAGCAACTAATGGGTG 59 14170734 14170838 AGTACACCCGCTTTAAGTG 59 NA Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 1 8 8 97 2R 14032395 14032483 AGGAAAGAATTCTGAGAAGC 57 14032543 14032561 CAATCATCGGATACAGACG 57 NA Drosophila melanogaster 50 Hsf FBgn0001222 FBtr0110964,FBtr0086782,FBtr0110966,FBtr0110965 1 4 4 60 2R 14018484 14018503 CAATGACAGCATAAGCAGTG 59 14018380 14018401 CTGATAGGAAATCAGTTCAGAG 57 NA DesignNoJunction Drosophila melanogaster 50 HLH54F FBgn0022740 FBtr0089547 1 1 1 67 2R 13645900 13645921 GGTGGAGGCAATTATAATTTCC 59 13647548 13647566 CTCTGGTGGAACTCAAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Sema-1b FBgn0016059 FBtr0086890,FBtr0086891 1 2 2 85 2R 13565383 13565401 TTTATAGGCAACTCGACGG 59 13564084 13565334 TTGTAGATGACGTCCTTGG 58 NA Drosophila melanogaster 50 RpL18A FBgn0010409 FBtr0086947 1 1 1 67 2R 13434113 13434131 ATTAAGGTGGACTCGATCC 58 13434064 13434082 TTTGAATCGTGGAACTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k01209 FBgn0022029 FBtr0086914,FBtr0086912,FBtr0086913,FBtr0086915 1 4 4 92 2R 13312000 13312086 CGGTTAAGAAGGGACATCTC 59 13312140 13312159 GTAATTGCAATAGGAGGGCT 59 NA Drosophila melanogaster 50 Amy-p FBgn0000079 FBtr0087004 1 1 1 99 2R 13007784 13007804 GTGAAACTGAACTTCCATCTG 59 13007705 13007723 TAGTTGGTGTCGAATTGGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 GstS1 FBgn0010226 FBtr0087005,FBtr0100258,FBtr0087006 2 3 3 121 2R 12981867 12981885 CATTCTACCTGGAGAAGCT 58 12981677 12981697 GACCATGTAGTTCATGTAGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG15609 FBgn0034180 FBtr0114627,FBtr0114625 1 2 6 103 2R 12896440 12897016 CAATCATTGTGAGACCGAG 58 12896355 12896373 TATTTAGCTGCATCTGTCG 57 NA Drosophila melanogaster 50 CG5522 FBgn0034158 FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026 1 6 6 81 2R 12676157 12676301 CTACTACACTATAGCAGCCTC 58 12676344 12676362 ATCCAACTGCTTGATGGAG 59 NA Drosophila melanogaster 50 CG8445 FBgn0034088 FBtr0087246,FBtr0087245 1 2 2 210 2R 12083400 12083418 AAATATGAACGCTGCTGGA 59 12083149 12083226 CTGTACATCGTGACATCCA 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 scb FBgn0003328 FBtr0087370,FBtr0087369 2 2 2 111 2R 11144952 11144970 ATCCAAACATCAGGAGACG 59 11145042 11145127 GAAGAAGCCAAACTTGTATAGC 59 NA Drosophila melanogaster 50 scb FBgn0003328 FBtr0087370,FBtr0087369 1 2 2 80 2R 11144983 11145002 TGGATCATTATTGTGTCCGT 59 11145042 11145127 GAAGAAGCCAAACTTGTATAGC 59 NA Drosophila melanogaster 50 CG12854 FBgn0033965 FBtr0087467 3 1 1 62 2R 10657520 10657539 AGTGCTACAGAACCTATGTC 58 10657477 10657495 GATTCCAGTGGGAATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12869 FBgn0033943 FBtr0087496 3 1 1 165 2R 10480311 10480329 GATCCTGATTCACCTGTCG 59 10480526 10480545 AAATCGTAGTTCGTTGATGG 58 NA DesignNoJunction Drosophila melanogaster 50 Cp1 FBgn0013770 FBtr0087592,FBtr0087591,FBtr0087593 3 3 3 299 2R 9854396 9854414 ATAAGTACGCCGATTTGCT 59 9854737 9854755 AATCGACCAGATTCTGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6209 FBgn0033862 FBtr0087651 2 1 1 60 2R 9550078 9550098 CAAGGAAATAAAGGGCAAGTG 59 9550038 9550057 CTCTTTCTTCTTGCGTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tafazzin FBgn0026619 FBtr0087864,FBtr0087862,FBtr0087863 3 3 3 183 2R 8641315 8641407 TCTTCATGTTTGGCAAGTG 58 8641150 8641168 GACTCGTAGATGATCCTGC 59 NA Drosophila melanogaster 50 nemy FBgn0033765 FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875 2 6 6 194 2R 8558847 8559072 AAGCGGATGAGGAAATCTG 59 8558671 8558690 CTCTGTACGCTTATAGTCCC 59 NA InUTR Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835 2 6 8 109 2R 8504609 8504628 CTGCATATTTACCCACTGAG 58 8504697 8505312 GACGTCTACCATTCTAAATCTG 58 NA Drosophila melanogaster 50 CG12943 FBgn0033572 FBtr0113065 3 1 2 114 2R 6792368 6792558 CCACAGGATGAAATTTATCCTC 58 6792631 6792651 GAACTACGTACTCAATTAGCG 58 NA Drosophila melanogaster 50 CG12936 FBgn0033549 FBtr0088222 1 1 1 60 2R 6699392 6699410 ATCGATCATTTCTCCAGCG 59 6699434 6699452 GCTTGATCTTCAAATCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7220 FBgn0033544 FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217 3 5 5 110 2R 6624695 6624713 CCATGTTGAGTAGTTGTCG 58 6624787 6624870 CAGAATCATCGTGGTACCA 59 NA Drosophila melanogaster 50 Hr46 FBgn0000448 FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367 3 4 4 111 2R 6095624 6095704 CAATTTCCGCGATATTTCC 57 6095531 6095549 CGAATCTATCGAGAACAGC 57 NA Drosophila melanogaster 50 CG1371 FBgn0033482 FBtr0088428 1 1 1 110 2R 5960613 5960693 GGGCACTGATGAAATACAC 58 5960521 5960539 TACCATACTTCTTCACGCA 58 NA Drosophila melanogaster 50 Pka-R2 FBgn0022382 FBtr0112901 2 1 5 92 2R 5884716 5885217 AGCTAGCATTCCTAGACAC 58 5884642 5884661 ACATTTGCTCATAGATCACG 58 NA Drosophila melanogaster 50 CG12134 FBgn0033471 FBtr0088388,FBtr0088389 1 2 2 60 2R 5859732 5859750 GAAACGTCTACGACAAGGA 59 5859774 5859792 TAGCTCTTGAAATCGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Not1 FBgn0085436 FBtr0112674,FBtr0112672 3 2 3 111 2R 5457800 5457819 GAAACTTTAACTCGAGCAGC 59 5457651 5457726 GTATCGCATGACCTTACGT 59 NA Drosophila melanogaster 50 CG8029 FBgn0033393 FBtr0088587,FBtr0088588 1 2 2 133 2R 5095480 5095498 TTGCTGGAAGATCACATGG 59 5095661 5095679 CTGGTGTAGTAGGTCTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 babo FBgn0011300 FBtr0088659 2 1 2 82 2R 4842342 4843221 CATCTTCAGCTACAGTTGC 58 4843267 4843285 ACCTTTCGTTACTGGTGAG 59 NA Drosophila melanogaster 50 Tom7 FBgn0033357 FBtr0088657 2 1 1 90 2R 4839305 4839323 TATCCGAGGGAGTTAAGGA 58 4839377 4839395 AAATACAGCACAAGAGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8272 FBgn0033337 FBtr0088686 3 1 1 72 2R 4777366 4777384 TCTTTAGAGCACTGCAGTG 59 4777249 4777267 GACTCATTTCCAGCTTGGA 59 NA DesignNoJunction Drosophila melanogaster 50 rgr FBgn0033310 FBtr0088692 1 1 1 80 2R 4496832 4496851 GGTACTTTGAGAGGATGGAC 59 4496893 4496972 TCTCATTGGAAATCTTGGCT 59 NA Drosophila melanogaster 50 Cyp6a14 FBgn0033302 FBtr0088734,FBtr0088735 3 2 2 60 2R 4452185 4452206 CAACTCAGATATTGTGCTAGAC 58 4452146 4452164 GTGGATATTATGCACCGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11191 FBgn0033249 FBtr0088868 2 1 1 230 2R 3889123 3889141 GATGTGAACAGCAACTGTC 59 3888911 3888929 ATTCGCCTTGTATTTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rnh1 FBgn0023171 FBtr0088883,FBtr0088884 2 2 2 110 2R 3819056 3819130 CAAGAATCACCAGCTAAACG 59 3818965 3818983 ATTCCCAAGTCAAGAGCTG 59 NA Drosophila melanogaster 50 CG12822 FBgn0033229 FBtr0088842 1 1 2 104 2R 3720673 3720745 TTGACTCAGGAAGAACCTC 58 3720813 3720831 CTCCATACAGTTCCAGGTC 59 NA Nonspecific Drosophila melanogaster 50 Gapdh1 FBgn0001091 FBtr0100479,FBtr0088903 2 2 2 61 2R 3679690 3679708 GCTAATCTCGTGGTACGAC 59 3679647 3679665 ACTTGATCAGGTCGATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088988,FBtr0088989,FBtr0088990 2 3 9 91 2R 3362872 3362953 CAATAAATGCAGGAGATCGG 58 3361302 3361320 TTGTGATGTGAAGATCCCA 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111087,FBtr0111059,FBtr0111074 2 3 60 94 2R 3244597 3249236 ATTGGTCATCACAGAACCT 58 3244521 3244539 TTAAGGCTTGACCCATAGG 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111055 1 1 60 96 2R 3236476 3239434 GTGCCCATCATTAGATGGT 59 3236398 3236416 TGAGAGTACCAGAGACCTG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111094 3 1 60 97 2R 3243476 3243494 AACGATGAGTTCAGTCACG 59 3236472 3243417 TTGTACCATCTATAAACGGGC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111066 2 1 60 109 2R 3225833 3225851 ATAGATTCCGTTCATGCGG 59 3219873 3225761 CATCTGGGAGGTACATTGAC 59 NA Drosophila melanogaster 50 CG7849 FBgn0033060 FBtr0085977,FBtr0085976 2 2 2 60 2R 1965401 1965419 GATGTGACAGATAGTCTGC 57 1965441 1965461 GGAGGTTCTTGATAATTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17490 FBgn0040009 FBtr0111256,FBtr0111258 1 2 4 177 2L 22433048 22440282 ACAATAATGAGAAGGTGGGA 58 22440422 22440440 CTCATATAGTCAGCGGGTG 59 NA InUTR Drosophila melanogaster 50 nrv3 FBgn0032946 FBtr0081520,FBtr0081518,FBtr0081521,FBtr0081519 3 4 4 91 2L 21385319 21385337 AGCACATTAGTTTGGTACG 57 21385391 21388515 AGATCTTGGTACGATTTCAG 57 NA Drosophila melanogaster 50 Hr39 FBgn0010229 FBtr0081481,FBtr0081480,FBtr0081479,FBtr0081478 1 4 4 104 2L 21255223 21255241 TAGTTTGGCAGGAACTTCG 59 21255309 21255551 ACATCCATGATTTCCTGCA 59 NA Drosophila melanogaster 50 phr6-4 FBgn0016054 FBtr0081404 1 1 2 146 2L 20645747 20645765 ACAGCTGTTTACACTCGAC 59 20645347 20645420 GATTTCAAACGGTACCTGC 59 NA InUTR Drosophila melanogaster 50 tj FBgn0000964 FBtr0081239 1 1 1 129 2L 19465154 19465172 TCTGGTGAACACATCTTCG 59 19465265 19465283 ATAGTGGTGTGCGTAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Side FBgn0032741 FBtr0081141 3 1 1 219 2L 19028914 19028932 AAACCACTCATGGAGAAGC 59 19029301 19029321 CAGCTCTGTATTTGTTAACCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17322 FBgn0027070 FBtr0081107,FBtr0081105,FBtr0081108,FBtr0081106 1 4 4 100 2L 18827245 18827516 ACTATTAGCTTAGAGGACTTCG 58 18827577 18827595 GTGGTATTGCAGTCCTCTC 59 NA Drosophila melanogaster 50 Mst36Fa FBgn0086681 FBtr0081074 1 1 1 61 2L 18676025 18676043 CTCATCGGCAATGATAGTG 58 18675931 18675949 GATATCGCGTTTCAATCGG 59 NA DesignNoJunction Drosophila melanogaster 50 fws FBgn0024689 FBtr0080999 1 1 2 82 2L 17480301 17480319 AACCAAGTGGTTAATGCCT 59 17480184 17480202 ATAAAGGTGGCCAATAGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0080978,FBtr0080975,FBtr0080977,FBtr0080976 1 4 6 84 2L 17408757 17408775 GAGGTTCTGAGCCTAAAGG 59 17408823 17408908 TTTCGATGTCCAGTGACTC 59 NA Drosophila melanogaster 50 CG31738 FBgn0051738 FBtr0080882,FBtr0080881 1 2 2 123 2L 16657881 16657899 ATTATCGGGATGAACGCAG 59 16658057 16658075 TTGTGACCATTCAGTTCGT 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 c(2)M FBgn0028525 FBtr0080830 1 1 1 80 2L 16303992 16304011 AGAAGATGCTATCCGAATGC 59 16304052 16304131 GTTCAATAGACTCGTTCAGGT 59 NA Drosophila melanogaster 50 CG13244 FBgn0032577 FBtr0080792 1 1 1 60 2L 15917295 15917313 TTCTACAACTTTGTCTGCC 57 15917337 15917355 CTACTTGTTCAGCATCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycE FBgn0010382 FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775 1 5 5 96 2L 15729492 15729576 ACATTTAGTCGGGAGATGG 58 15729414 15729432 AGATCACTCGGAAGAATGG 58 NA Drosophila melanogaster 50 yuri FBgn0045842 FBtr0100611,FBtr0080709,FBtr0100610 1 3 7 80 2L 15258932 15261730 TCAAGTGGAAATTAACGGAC 58 15258871 15258892 CTAATCTGGTTATCTCGATCCT 58 NA Drosophila melanogaster 50 Adh FBgn0000055 FBtr0100594,FBtr0100591,FBtr0100589 2 3 5 100 2L 14616350 14616368 TTTGACCAACAAGAACGTG 58 14616432 14616515 GGATCACCAGGTTCTTCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG33648 FBgn0053648 FBtr0091625 2 1 1 60 2L 14525152 14525171 CCAGACTGTTAATATTGCCC 58 14525253 14525274 CCATTATATCGCTTGTATAGGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG7968 FBgn0028532 FBtr0080551 2 1 1 60 2L 13849582 13849602 CTACAAGGAAATTGGCATCAG 59 13849687 13849705 CAGATCGGTGAAGTTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7099 FBgn0032517 FBtr0080499 1 1 1 139 2L 13389114 13389206 ATGAGCCGAATATTACCGA 58 13389309 13389327 TTTCTGGCGGTTAATTTGG 58 NA Drosophila melanogaster 50 CG6108 FBgn0032498 FBtr0080459 1 1 1 60 2L 13279487 13279508 ATACAACTCAGAACCTTCTCAG 59 13279528 13279547 GTTATCCTCATCCTGTTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6043 FBgn0032497 FBtr0113039 2 1 5 80 2L 13274311 13274331 AGCGTATCATACCGATAACTC 59 13274372 13274705 GGTAATTCTGGTAACCACCA 59 NA Drosophila melanogaster 50 CG16972 FBgn0032481 FBtr0080488 1 1 1 157 2L 13198536 13198613 CCTGACTAGCGAGAAAGAG 59 13198397 13198418 CGCAGAAGTAATACACATTCAC 59 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090013,FBtr0090027 1 3 17 90 2L 12731059 12737970 TCTTTATGGTTCTGGCTACC 59 12738023 12738041 AAGTAGTACAGGAAGGCGA 59 NA Drosophila melanogaster 50 CG5446 FBgn0032429 FBtr0080388 3 1 1 93 2L 12427509 12427528 CAGAACTACTCCCTGAACAG 59 12427354 12427372 ACTTGTCCTGAACGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31759 FBgn0051759 FBtr0080349,FBtr0080348 2 2 2 60 2L 12208525 12208545 CTGCAGGTATTAGATACGGTC 59 12208567 12208585 TTAGGGATGAAATCCACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6509 FBgn0032363 FBtr0080246,FBtr0080247 3 2 2 80 2L 11511223 11511241 CGGTGTATGATGAGGAACC 59 11510833 11511182 GAGTCACATACCTTAGAGTCTC 59 NA Drosophila melanogaster 50 CG33129 FBgn0053129 FBtr0080169 2 1 4 108 2L 10968579 10968708 GCTTCTGAAAGCTATAAACGAC 59 10968492 10968511 CAGTTCTTCGTTCAGATTCG 58 NA Drosophila melanogaster 50 CG14071 FBgn0032312 FBtr0080178 1 1 1 60 2L 10888607 10888627 ACGATACCGAGGATAATTTGG 59 10888567 10888586 CTCAAATTGCACTGGAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6508 FBgn0032303 FBtr0080139 3 1 1 60 2L 10820325 10820344 GAAAGAACCATCTAGCTACG 57 10820366 10820385 GAATCTGGAGTATTCATCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5168 FBgn0032246 FBtr0080020 2 1 1 277 2L 10424070 10424088 AACTTTGAGACACCATGCA 59 10424661 10424742 ACTTTGTTGCTATGTCCCT 58 NA DesignRelaxed Drosophila melanogaster 50 CYLD FBgn0032210 FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069 1 5 5 80 2L 10296852 10296949 CCGTTTCTAAAGCTAAGCTC 58 10296791 10296812 CGGTAATGTTAACTTCTCATCC 58 NA Drosophila melanogaster 50 CG34159 FBgn0085188 FBtr0112350 1 1 1 80 2L 10203021 10203391 GGATCAAGGTCTACGAACAG 59 10202960 10202981 CGAATGGCTTAAAGTTCTTCAG 59 NA Drosophila melanogaster 50 CG17005 FBgn0032109 FBtr0079798 2 1 1 103 2L 9328260 9328280 GAGATCCTGTCTATCAATCCT 58 9328345 9328421 TCTTCAGTGTGAACTTCGT 58 NA Drosophila melanogaster 50 CG13090 FBgn0032054 FBtr0079683 2 1 1 66 2L 8518714 8518732 TACCAACAGAAGATCCAGG 58 8518762 8518780 TCTCGAATTCTGCAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fy FBgn0001084 FBtr0079712 1 1 1 83 2L 8401853 8401871 TTCTTGTTGTTTGTGGCAG 59 8401729 8401750 CTTCTCCTGGAGTATATTAGCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG31898 FBgn0051898 FBtr0079662 1 1 1 60 2L 8400996 8401017 GGAAATCGTTAAGTCAAAGCTC 59 8401038 8401056 CTATCCTCGGTCAATCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13394 FBgn0032037 FBtr0079717 2 1 2 183 2L 8389265 8390108 TACTTAGCTCCCAATATGCG 59 8389101 8389119 GAACTCCTTCCTCGAATGG 59 NA Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567 3 8 9 166 2L 8089724 8105699 GCTCAATCACTTGATAAGCTG 59 8106857 8106875 GAAGGTACATCCGTCACAG 59 NA Drosophila melanogaster 50 MED20 FBgn0013531 FBtr0079544 3 1 1 60 2L 8072130 8072148 ACACCGTGAAACAATACCT 59 8072088 8072106 CCCATAAGAGTCACATGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Proct FBgn0045038 FBtr0079562 1 1 1 185 2L 7870281 7870299 GATTTGGACAAGTTGCGTG 59 7865997 7866015 ATTAGAGTTGCCGTTGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7164 FBgn0031946 FBtr0079487 1 1 1 60 2L 7781759 7781777 TAAGATCGAGTCAGTTGCC 59 7781801 7781819 TTGTCGTAGGTCTTTCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7179 FBgn0020880 FBtr0079497 1 1 1 60 2L 7777027 7777045 CCGATCAATATCAGACCAC 57 7776985 7777003 GCATCGTAATCCTTGAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myo28B1 FBgn0040299 FBtr0079475,FBtr0079473 1 2 4 80 2L 7687916 7687984 CCATTGGACTCCGATAAGG 59 7688027 7688046 CTTAACAACAGCTTTGAGCA 58 NA Drosophila melanogaster 50 CG5171 FBgn0031907 FBtr0079440,FBtr0079439,FBtr0114588 3 3 3 123 2L 7404096 7404115 ATAATTGGTCGCAGAAAGTG 58 7404267 7404285 GTTTGAATCTGGGCATCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9044 FBgn0031752 FBtr0079149 3 1 1 110 2L 5951984 5952060 ACGTTAACTGAAAGGACGA 58 5952134 5952152 TTTATCCTTGCGCATTGTG 59 NA Drosophila melanogaster 50 CG9021 FBgn0031747 FBtr0079154 2 1 1 63 2L 5903958 5903978 GACTTAAATTGGATCCCACCT 59 5903915 5903933 GAAATGTGTAGGTCGAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3756 FBgn0031657 FBtr0078994 3 1 1 67 2L 4969834 4969852 CATGATTAAGCTGAACCGC 59 4969883 4969901 CTGGTGAGAAACAGTTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cf2 FBgn0000286 FBtr0089647,FBtr0089648 2 2 3 72 2L 4879192 4880391 TCGCATACATACAGGAGAG 58 4879138 4879156 CAGATAGTCCTTCACGCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Cf2 FBgn0000286 FBtr0089647,FBtr0089648 1 2 3 81 2L 4879192 4880392 CTCGCATACATACAGGAGAG 59 4879130 4879148 TGCTTGGTCAGATAGTCCT 59 NA Nonspecific Drosophila melanogaster 50 CG3355 FBgn0031619 FBtr0077376,FBtr0100560 2 2 2 60 2L 4651845 4651864 GTAAAGGGTCGTCATTATCC 57 4651885 4651905 CATAGCGATCATTGATTAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31961 FBgn0051961 FBtr0077484,FBtr0077485 1 2 2 60 2L 4187335 4187355 CGTTGACTACTTCTACCAGAC 59 4187295 4187316 CTTTAATCGCTGCTCTATATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3980 FBgn0031575 FBtr0077504,FBtr0077503 1 2 2 101 2L 3869048 3869122 ATCAACAGTTTGGATGGCT 59 3869185 3869205 AAGACTCTCAATAGGATCGAC 58 NA Drosophila melanogaster 50 CG15406 FBgn0031517 FBtr0077580 3 1 1 110 2L 3310196 3310633 CGACAATAGCATTCGAGGT 59 3310707 3310725 CAGGGTATCACGTGATAGG 58 NA Drosophila melanogaster 50 CG17259 FBgn0031497 FBtr0077667 1 1 1 62 2L 3036055 3036073 TATCGCGTTGTTAACATCG 58 3036011 3036029 GAGATCCAGCTTCTTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34447 FBgn0085476 FBtr0112751 2 1 1 103 2L 2419491 2419561 CTGTACTCGAATTCCACCC 59 2419406 2419427 CCATGGATGAGTATCTTTAGGG 59 NA DesignRelaxed Drosophila melanogaster 50 VGlut FBgn0031424 FBtr0077769 1 1 1 178 2L 2407361 2407474 AAGGAAACCTCATTCGGTG 59 2407616 2407634 CCAGGATTGGTAACATCCC 59 NA Drosophila melanogaster 50 Rab5 FBgn0014010 FBtr0077793,FBtr0077798,FBtr0077796,FBtr0077794,FBtr0077797,FBtr0077795 3 6 6 203 2L 2360797 2360985 AACTGCATAAACAAGCCTC 58 2360549 2360569 CGTTCTTAGGTAGTTTCTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG10880 FBgn0031398 FBtr0077843 3 1 1 73 2L 2215945 2215963 TGGACAAACTTATTGCCGA 59 2215890 2215909 GAAGAGTTCCAAATCTTCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(dx) FBgn0003557 FBtr0077824,FBtr0077823,FBtr0077822 3 3 3 83 2L 2040140 2040221 AATTAAGCGTGACAATCGAG 58 2040267 2040285 TGTCAATCAAGAGCTCCAC 59 NA Drosophila melanogaster 50 CG4896 FBgn0031319 FBtr0077968,FBtr0114467,FBtr0077970 1 3 3 80 2L 1181782 1181861 TGAGGGTCTATCCTATCGT 58 1181905 1181923 CTCCTATTTGGTGGAGGAG 58 NA Drosophila melanogaster 50 PNUTS FBgn0053526 FBtr0091486,FBtr0091489,FBtr0091487,FBtr0091488 1 4 4 81 2L 872013 872033 CAATCGCCTCAAGATAAACTC 59 872076 872221 TAGAATGCGTACACCTTCG 59 NA Drosophila melanogaster 50 lectin-21Ca FBgn0040107 FBtr0077998 1 1 1 60 2L 624973 624991 TCACTTAGCAAGTCTGGAG 58 625015 625033 CACGGATAGATTTAGGGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11835 FBgn0031264 FBtr0078076 2 1 1 60 2L 562207 562225 AACCAAAGAGTCCAAGGTG 59 562165 562183 AGTGTTCTGATCCAATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3345 FBgn0031240 FBtr0078127 3 1 1 109 2L 270510 270528 TTTAAACGACGATCTCAGC 57 270600 270673 TCTGATAAGCTTTGTAGTGC 57 NA Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100309 3 1 8 152 2L 119259 119277 ATTACTGAATTGCGTTCCC 58 119068 119144 TTCGTCAATCACTTCTAGCT 58 NA InUTR Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089431,FBtr0089436,FBtr0089435 2 3 10 116 2L 111013 111031 TGGAAGACACTTAACCTGC 59 111110 112701 AAACATGATACCCTGGTCAC 59 NA Drosophila melanogaster 50 CG17168 FBgn0039943 FBtr0113730 1 1 1 60 XHet 61760 61778 GAAGATTAAGCAAAGGGCG 59 61801 61820 GCTTTCATTGGAGGAATCTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR34311 FBgn0085340 FBtr0112509 2 1 1 67 X 20254718 20254795 GGAATACTGAACTCAAAGAAGC 59 20254672 20254690 GGTATCGCAGTTAGATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14618 FBgn0031189 FBtr0077351 3 1 1 130 X 21876259 21876277 ACCACAATCACTTCAAGGG 59 21876371 21876480 CTCAAACACATGGTAGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14613 FBgn0031188 FBtr0077367 2 1 1 180 X 21873120 21873199 CTACCTGTCAAAGAGTGGC 59 21872795 21872814 AATGGATACGGTTGTACACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33502 FBgn0053502 FBtr0070055 2 1 1 102 X 21482189 21482207 GGAGAGCTTGAAGTTCCTG 59 21481054 21482123 CAATTTGGCCAAAGGACTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32551 FBgn0052551 FBtr0074564 3 1 1 106 X 18333120 18333138 AAATATAACCCAAGCCTGG 57 18333208 18333849 TTTCATTGGGTGAATCGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089658,FBtr0089660,FBtr0089657,FBtr0089661,FBtr0089659,FBtr0089662,FBtr0089663 1 7 7 82 X 17844790 17845235 CTAACTGTCAGGTTCCTCG 59 17844726 17844744 ATGATGGCGATTATGTCGA 58 NA Drosophila melanogaster 50 Arpc3B FBgn0065032 FBtr0113478,FBtr0074410 2 2 2 60 X 16999552 16999571 ATGAGTCACTCTACTTCTGG 58 16999015 16999531 TCCGACTTAACTTCGTAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9519 FBgn0030589 FBtr0073984 3 1 1 60 X 14750257 14750276 TCAATGGTGATTAGCCAGAC 59 14750216 14750236 GATAGATCTCGAGCATATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33174 FBgn0053174 FBtr0073826,FBtr0073825 3 2 2 81 X 13696194 13696278 TCTCAAGAGCTTGGTTATCC 59 13696322 13696340 TGCAGTGGTGTAGTAATGC 59 NA Drosophila melanogaster 50 lic FBgn0015763 FBtr0073720 1 1 1 101 X 12985990 12986008 GGTCTTCCTTCACGATCTG 59 12986159 12986177 ATGACTTTCAGTTGAGCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG1537 FBgn0030260 FBtr0073394 1 1 1 157 X 10956478 10956710 CGTAACATTAACCATTGCTG 57 10956278 10956296 TAGATGAACTCGCAAGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 spirit FBgn0030051 FBtr0071231,FBtr0071230 2 2 2 86 X 8466541 8466559 GAGGTTCGACCACTATGTG 59 8466322 8466340 TTGTTCAGTTCATTGCAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12796 FBgn0029909 FBtr0070973 3 1 1 80 X 6726265 6726284 CATGTTGACTCTGATCTCGA 59 6726134 6726226 CGGGTCATGTATCTTCTATAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lin-52 FBgn0029800 FBtr0070840 1 1 1 106 X 5648377 5648477 GATTAATGAACTAGCCCAGCT 59 5648291 5648309 GAGTCATCTCCATTGCCTC 59 NA Drosophila melanogaster 50 CG2930 FBgn0028491 FBtr0070608,FBtr0070609,FBtr0070610 2 3 3 299 X 3769989 3770007 AAATAGCTCCTGCAAGTCC 59 3770270 3770360 GGTAGGGCAGTTTCTTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3021 FBgn0040337 FBtr0070173 3 1 1 164 X 921579 921686 GTACATCACTTCCAAACGTG 59 921813 921831 TAGATGGTATTGCTTGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41041 FBgn0069966 FBtr0114295 3 1 1 105 U 403738 403756 AGAAGGCGATTAGAGACAG 58 403146 403670 CTAGATCTCCAAAGGGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131 3 5 5 84 4 372565 372585 CGATATACCACAACATGTTGG 59 372445 372522 GTGTCCAGCCATTATATTTGAG 59 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 2 14 14 109 3R 27690344 27690863 AAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 CG31002 FBgn0051002 FBtr0085813 3 1 1 60 3R 27220669 27220749 TAATGAGGTCCTTAGGATTGC 59 27220629 27220650 GATGAAATCACTACTTTGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15554 FBgn0039820 FBtr0085736 2 1 1 88 3R 26951977 26952381 TGGCTGTTAACCCTAATGG 59 26952433 26952451 CCGTAGACATAGGCTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15550 FBgn0039811 FBtr0085751 2 1 1 60 3R 26762705 26762723 CACTGGAATCCATACCCAC 59 26762663 26762683 ATACAAGTGATCAGGACTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pka-C2 FBgn0000274 FBtr0085727 2 1 1 80 3R 26521699 26521717 GCCCTCATACTTTACGTCC 59 26521575 26521657 GAGTTTCCTAAACGCTTTGAG 59 NA Drosophila melanogaster 50 sima FBgn0015542 FBtr0114597,FBtr0085565 1 2 2 86 3R 25893709 25893727 CATTGAGATTCCGTTGGGA 59 25893777 25894044 TCATGCATCTTGTCATCCA 58 NA Drosophila melanogaster 50 CG4582 FBgn0039344 FBtr0084896 1 1 1 64 3R 21407984 21408201 CAATCCCACCAGAATCCTC 59 21407938 21407956 GCTCGTTGTACATGTTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13643 FBgn0040601 FBtr0084722 2 1 1 104 3R 20725656 20725674 CACATCCACTACATCGACC 59 20725509 20725589 TCGTCTAAATCTTGCTTCGA 59 NA Drosophila melanogaster 50 CG13826 FBgn0040590 FBtr0084391 1 1 1 60 3R 19048541 19048560 AAGACCAACATTTGGAAAGG 58 19048500 19048521 GAAGCCTTTCAATACTTACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13837 FBgn0039042 FBtr0084345 2 1 1 60 3R 18870115 18870133 CTCCTGCTCATCTAGTGTC 58 18870156 18870175 TGGCAGTTGATGATATTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-50 FBgn0024832 FBtr0084252 3 1 2 84 3R 18288485 18288571 GCTTCTTCCACATCAAGAG 58 18288619 18288637 AGGAACTCAAACACCATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31207 FBgn0051207 FBtr0084044 3 1 1 62 3R 16872082 16872103 GCTACTTGAAGATATACGAGCT 59 16871977 16872059 CTAGCCAGAATACCCATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Sep2 FBgn0014029 FBtr0083945 3 1 1 135 3R 16413958 16413976 TTTCGTCGACAAGAAGGAG 59 16413175 16413859 TTCGCCTATACACATGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TFAM FBgn0038805 FBtr0083949,FBtr0083948 3 2 2 80 3R 16401331 16401873 CTACAGGAAAGCGATTTCC 58 16401269 16401287 ATAAGATTTCCGTGACGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5180 FBgn0043457 FBtr0083903 3 1 1 61 3R 16384864 16384883 GAAGGTCTTAGAGATCACCT 57 16384907 16384989 TGACCGCTTGTTGTATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Cpr92A FBgn0038714 FBtr0083811 2 1 1 241 3R 15424200 15424552 TGAAGATTTCCCTGCTGAG 59 15423977 15423995 CAGGTCACCAGTATAACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ahcy89E FBgn0015011 FBtr0083378,FBtr0083379 2 2 2 124 3R 12804736 12804817 ATTGATGTGAATGGCTTGC 59 12804630 12804648 AAATTCACCAGTCTTCCCT 58 NA Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083352 2 1 6 88 3R 12484779 12558421 AAGTACAAATGGTCTGCGA 59 12484709 12484727 AATGATTCGTGTGGAACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6901 FBgn0038414 FBtr0083269 2 1 1 81 3R 12149496 12149514 CTGTTGGTTTGTAGGTGTC 58 12149558 12149650 AACATAGTAGACCAGCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 pxb FBgn0053207 FBtr0083162 1 1 2 60 3R 11510996 11511014 CCATCATCACTATCAGCAG 57 11512326 11512347 GGGATAGTGAATACTCTTTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 Trax FBgn0038327 FBtr0083093 1 1 2 60 3R 11188249 11188318 TTCTACAGCGGTTACATCAG 59 11188339 11188359 TGATCTTACGCCATAGTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 foxo FBgn0038197 FBtr0082887,FBtr0082886 1 2 3 83 3R 9892800 9892818 ATTTACGAGTGGATGGTCC 59 9892865 9905076 TATGGAGTTCTTCCATCCG 58 NA Drosophila melanogaster 50 rdx FBgn0086364 FBtr0082872,FBtr0082871,FBtr0082874,FBtr0100852,FBtr0100361 1 5 5 90 3R 9796061 9796079 AAATCAGAAGTCAGAGCCA 58 9795916 9796007 AACGATAAGCTCTTTGGGA 58 NA Drosophila melanogaster 50 CG34307 FBgn0085336 FBtr0112503 3 1 1 72 3R 7723562 7723580 GCTCTCATAGTGATTCGCT 59 7723616 7723693 GAATTGGGTATATGGCCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pros FBgn0004595 FBtr0089720,FBtr0089719,FBtr0089718 1 3 3 83 3R 7203837 7203855 CAAGATGTACTTCCCGGAC 59 7203900 7217259 TAGAATTCTCGGAAGTTCGAG 59 NA Drosophila melanogaster 50 HP1e FBgn0037675 FBtr0082016 1 1 1 60 3R 5147703 5147723 CGATGAAGATAATACCTGGGA 58 5147744 5147763 CGAATCAATAAGTGAATGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Alh FBgn0037471 FBtr0113199,FBtr0081615 1 2 6 130 3R 2921228 2921310 GAAGATGATCTCAGCAGCA 59 2921116 2921134 TTGTCGTTCTTATGCAACG 58 NA Nonspecific Drosophila melanogaster 50 CG12147 FBgn0037325 FBtr0078793 3 1 1 60 3R 1252765 1252786 AAATCATCCTCATGAGAAGGAC 59 1252726 1252744 GGATTGCTTCTCCTCTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mms19 FBgn0037301 FBtr0078778 1 1 1 126 3R 1060945 1061030 CGATGTTGTTGGTGATCTC 58 1061118 1061138 GTAGAGGAATTTAACGACAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14646 FBgn0037241 FBtr0078919 3 1 1 70 3R 216766 216836 CTTAGCGTAGCTAAGGCAG 59 216869 216888 CTTATCATCTGCAAGGTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9795 FBgn0037234 FBtr0078907,FBtr0100617,FBtr0078906,FBtr0078905 3 4 4 86 3R 150514 150598 GAGATATAGACGATCTAAAGACCC 59 150643 150661 CGGATTCCAGATGTGAGAG 59 NA Drosophila melanogaster 50 CG40397 FBgn0058397 FBtr0111151 2 1 1 84 3L 23855352 23855370 TGAAGAAATGGAACGAGCT 59 23855286 23855304 TTTGTATGCCTGACTACCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17698 FBgn0040056 FBtr0111168,FBtr0111167,FBtr0111166 1 3 3 80 3L 23741093 23741114 CAATAAGTAATGGATCAACGGC 59 23741153 23741252 CACAATATTCGTTCTGTCCAG 59 NA Drosophila melanogaster 50 CG33766 FBgn0053766 FBtr0091767 3 1 1 69 3L 22638774 22638865 AATCGTGCCAATACCTACG 59 22638897 22638916 ATAGCTGCGATTAAAGTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32440 FBgn0052440 FBtr0078345 2 1 1 70 3L 21353622 21354058 GGACACCAACGTCTATCAG 59 21354092 21354110 CAAAGTACAGGACTGACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr77a FBgn0045474 FBtr0078281 2 1 1 79 3L 20730863 20731347 ACACTATGCACTTCTACGG 59 20730802 20730820 CAGCTTAAACAGTCCACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7757 FBgn0036915 FBtr0074891,FBtr0074892 1 2 2 60 3L 19904574 19904594 GCCATAACCAACCTTATAGAG 57 19904616 19904688 GTTTCAAGGGCTCATTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14353 FBgn0036771 FBtr0075144 1 1 1 111 3L 17901523 17901541 AGTCCGTAGAGAAGAAGGT 59 17901616 17901690 ATATCCAGAACTTGCAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0112850,FBtr0075441 1 2 6 229 3L 16069528 16069546 AGACCAAATCACTGTCAGC 59 16069739 16070090 ACTGCCACTTTCATATCCT 58 NA DesignRelaxed Drosophila melanogaster 50 Toll-6 FBgn0036494 FBtr0075614 2 1 1 60 3L 15331908 15331929 GAACATGATTACCGTTATGGAG 58 15331949 15331968 GAGACCATAGAGATTTCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10140 FBgn0036363 FBtr0075853 3 1 1 89 3L 13433178 13433265 TACTACCTTTGTCGCTCTG 58 13433107 13433125 AGGATGTACACAGCTTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33703 FBgn0053703 FBtr0091691 1 1 1 251 3L 9505479 9505550 ATCGTTCTTAACCTTGGTG 57 9505192 9505210 CATGTAAACACCGTTTGGA 58 NA DesignNoJunction Drosophila melanogaster 50 Tequila FBgn0023479 FBtr0076526,FBtr0076525,FBtr0076528 3 3 4 102 3L 9082959 9082977 GCAAAGATGAGGCTAACTG 58 9083042 9083131 CATTGACCATTAGCCTTGAC 58 NA Drosophila melanogaster 50 CG7185 FBgn0035872 FBtr0076710 3 1 1 77 3L 8305157 8305385 AGAGCTGTTTCTGATGCAG 59 8305098 8305117 TTTGATCAGTGAAATGGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32387 FBgn0052387 FBtr0076920,FBtr0076919,FBtr0110848 3 3 3 88 3L 7158306 7158395 ATGGGTTCTAGTATCCAATGC 59 7158238 7158256 CCATGCGGAGTTGATAGAG 59 NA Drosophila melanogaster 50 Cpr65Eb FBgn0035736 FBtr0076928 3 1 1 107 3L 7081709 7081798 CAACGTCGTTGTACTTGTG 59 7081620 7081638 TTCAGTTCGTTGACAAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7386 FBgn0035691 FBtr0076999 1 1 1 60 3L 6184215 6184291 CGAATGCAAGGTTTGTGAC 59 6184312 6184333 CTTCAGATGATTGTTGAGACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10478 FBgn0035657 FBtr0077069 2 1 1 144 3L 6003671 6003757 AATTTAATTGCGAAGGCTGG 59 6003546 6003567 CGTGTCTTATGATATAGTCACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32846 FBgn0052846 FBtr0073009 3 1 1 129 3L 2951189 2951270 GATGATCCCAATGCTTCTG 58 2951078 2951098 ATTGGTAGTAGTCCGAAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15822 FBgn0035308 FBtr0072917,FBtr0114630 2 2 2 76 3L 2157416 2157434 CAACATCCACGAGATTCAG 58 2157127 2157376 CATAGTGGTAGATGCTCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG9184 FBgn0035208 FBtr0072725 3 1 2 245 3L 1322692 1322759 TGGTTTGGTTATCCTGCAG 59 1322465 1322484 TAATGGTGTTGTACTGACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34413 FBgn0085442 FBtr0112685,FBtr0112684,FBtr0112683,FBtr0112686 3 4 4 81 2R 20770530 20770605 CTTCCTGCAAGTGATAACG 58 20770649 20770668 AAAGTTCACTAGGATAGGCG 59 NA Drosophila melanogaster 50 CG16912 FBgn0035064 FBtr0072429 1 1 1 111 2R 20670493 20670512 TAAAGGCTATCGAGCAACAG 59 20670349 20670422 GCATTGTTGACGATTATTAGGG 59 NA Drosophila melanogaster 50 CG30272 FBgn0050272 FBtr0071890 3 1 1 83 2R 18717779 18717855 CCAAACTTTCCAGAGTACGA 59 18717901 18717919 CTGTGTCAGTATGTAGCCC 59 NA Drosophila melanogaster 50 CG30196 FBgn0050196 FBtr0071927 1 1 1 60 2R 18542579 18542689 CTTCTCTGCTGTAATCCCA 58 18542537 18542555 AGCTGCAGTAGTGATTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16739 FBgn0034505 FBtr0086286 1 1 1 174 2R 16229782 16229802 GCTTAAGGATCTGTACTTCAC 58 16229938 16230018 CACTTTGACAATTCGAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15082 FBgn0034397 FBtr0086617 3 1 1 279 2R 14718797 14719686 TATTTGCAGGTCCACTACG 59 14719929 14719947 GGGTCGAGATAGCTATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15096 FBgn0034394 FBtr0086633,FBtr0086632 1 2 2 97 2R 14696278 14696409 ATTGTCACAAATGAGCACG 59 14696199 14696217 CCGAAGATCACGTACAGAG 59 NA Drosophila melanogaster 50 Hsf FBgn0001222 FBtr0110964,FBtr0086782,FBtr0110966,FBtr0110965 2 4 4 235 2R 14020428 14020510 GTATGGATTCCACAAGATCAC 58 14020213 14020231 AATCCAGATTGTCCTGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10257 FBgn0033985 FBtr0087408 3 1 1 145 2R 10830749 10830767 ATGATTTGGGTCAATGGAC 57 10831382 10831400 ATGTAGAGGGAGTACTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 Tfb1 FBgn0033929 FBtr0087548,FBtr0087549 2 2 3 158 2R 10251001 10251083 GTTATGCGGATATCAAGACTC 58 10251203 10251221 ATAGCTCCTTGACCTTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 RN-tre FBgn0020620 FBtr0087603,FBtr0087605 2 2 3 123 2R 9877122 9877201 CAGGACAGACAAATATGGCT 59 9877018 9877039 CTGATTTAGCATCTTCATCCAC 59 NA Drosophila melanogaster 50 cnn FBgn0013765 FBtr0100656,FBtr0087705,FBtr0087704,FBtr0100654,FBtr0087703 2 5 5 84 2R 9327822 9327906 AAGTCAGAGGAATCTACATCAC 59 9327759 9327777 GATCTACCTTGGCACAGTC 59 NA Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835 3 6 8 184 2R 8505421 8505504 GATAATGAGAATCGAATGGAGG 58 8505951 8505969 GTTATTGCATCTCGCTGAG 58 NA Drosophila melanogaster 50 CG13177 FBgn0040759 FBtr0112772 2 1 1 82 2R 8051418 8051500 CCTATAGAGGACAAGAAACCC 59 8051544 8051562 GATGGAGCTGCATAGTAGC 59 NA Drosophila melanogaster 50 inv FBgn0001269 FBtr0088068,FBtr0088070,FBtr0088069,FBtr0088067 1 4 4 60 2R 7364318 7364339 AGCATAGACAATATCCTGAAGG 59 7364360 7364378 TTAAAGCACCAATCTTGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18336 FBgn0040763 FBtr0088175 3 1 1 269 2R 7181676 7181755 CGATTTGGTTTCGACTTCC 59 7181425 7181443 TCAATCATGATTGAGGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18336 FBgn0040763 FBtr0088175 1 1 1 64 2R 7181676 7181755 CGATTTGGTTTCGACTTCC 59 7181630 7181648 AAATGCATGTCGTTCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp47a FBgn0033573 FBtr0088200 2 1 2 60 2R 6797429 6797447 TGAATCGAGTTCTAGTGCT 57 6797470 6797569 ATGTTTATCTCGCTCAAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30016 FBgn0050016 FBtr0088241 1 1 1 74 2R 6762775 6762848 TATTGGATACTTCGGTGGG 58 6762719 6762737 ATTCCTGAATCTCGTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1663 FBgn0033449 FBtr0088477 3 1 1 75 2R 5724934 5725011 CATGACTACATCTCGAACCA 59 5725049 5725067 AGTACTGAATAACTCCGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rya-r44F FBgn0011286 FBtr0088640,FBtr0088638,FBtr0088637,FBtr0088639 2 4 4 82 2R 4772299 4772385 TTGTTAACGGCACTATTGG 58 4772428 4772449 GAAGTACTTAAGAATCAGCTCC 58 NA Drosophila melanogaster 50 CG12822 FBgn0033229 FBtr0088842,FBtr0088841 2 2 2 158 2R 3719998 3720016 GACATTGAGACGATAACCC 57 3720138 3720215 ATAATTGCTCTGACCTTGG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG34215 FBgn0085244 FBtr0112408 2 1 1 60 2R 2719085 2719103 GTGTGAGCGAATCATATGC 59 2718989 2719061 ATAGGCACCACATGATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7845 FBgn0033059 FBtr0086023 3 1 1 63 2R 1962597 1962615 GTGGACAATGAATACGAGG 57 1962489 1962570 ACTCATTATCGCTGTCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34136 FBgn0083972 FBtr0110944 3 1 1 81 2L 21097208 21097226 CTGTCGTTTCCCTACTGTG 59 21097270 21098594 AATTGTTGGTGCTCATTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40169 FBgn0058169 FBtr0100179 2 1 2 99 2L 20238606 20238626 CGCCTTTAAGTCTTCTTTGTC 59 20238687 20245322 AAACTGCTCTTCATCAGTG 57 NA DesignNoJunction Drosophila melanogaster 50 TotF FBgn0044811 FBtr0081310 2 1 1 71 2L 19912252 19912330 GAAGACAGTCATTCTATTTGGC 59 19912202 19912220 TCACTCTGTGCATGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sick FBgn0085372 FBtr0112547,FBtr0112549,FBtr0112548 3 3 3 86 2L 19926498 19928628 CAGCAATAGCATAAGATCGAC 58 19928676 19928694 TAGTAGGGCTCGATTTCCA 59 NA Drosophila melanogaster 50 l(2)37Bb FBgn0002021 FBtr0081177 3 1 1 66 2L 19051030 19051110 AGAAGGATGACACGTATGC 59 19050982 19051001 GAGAATTGCTGACAAAGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6115 FBgn0040985 FBtr0080959 1 1 1 94 2L 16887665 16887798 AAGCACTTGCAGTATTTGG 58 16887589 16887607 TCCTTGTGGTTCATGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33641 FBgn0053641 FBtr0091618 1 1 1 63 2L 13529420 13529499 CCCTTTAAAGCGAACTTTACC 59 13529524 13529542 GTGGTAGCTCTTCTTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nub FBgn0085424 FBtr0112642 3 1 2 119 2L 12614102 12614120 ATAAGGTCCTGGAACTGAC 58 12614201 12622983 GACTGATATCATTTGGGTCCT 59 NA Drosophila melanogaster 50 CG14930 FBgn0032366 FBtr0080245 1 1 1 141 2L 11520511 11520532 CATCAATAGATCCTATAGCTCG 57 11520391 11520410 CGATAAATTGACAGTTGCCA 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4709 FBgn0032169 FBtr0079884 1 1 1 70 2L 9955463 9955481 TTTACCTTTAAGCCGACGG 59 9955575 9955593 ATAAGCTTAGAGCCGATGC 59 NA DesignNoJunction Drosophila melanogaster 50 Pka-C1 FBgn0000273 FBtr0079851,FBtr0079850,FBtr0079852 3 3 3 70 2L 9696917 9696935 AGATCATTCTGTCCAAGGG 58 9696865 9696883 CATTTCGTAGACGAGTACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 numb FBgn0002973 FBtr0079821,FBtr0079822 1 2 2 85 2L 9460672 9460690 TTCCGTCAAGTATCTGGGA 59 9460739 9460941 ATTGCCTCAAGACCTTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9468 FBgn0032069 FBtr0079741 3 1 1 91 2L 8779040 8779058 GCGTTTCAAGAAGGTTCAC 59 8778903 8778985 GTTTGACTTGCGAAGTCTG 59 NA Drosophila melanogaster 50 CG13784 FBgn0031897 FBtr0079414 1 1 2 192 2L 7219081 7219099 ATCAATGATGAGATGGGCC 59 7218853 7218926 TCCAGAAGAGTATTCTCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13773 FBgn0042092 FBtr0079372 1 1 1 184 2L 6907124 6907240 GCTCCAAAGAACAAATCCA 58 6906958 6906976 GTCTTTGTAGTGTCACCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Thor FBgn0022073 FBtr0077524 1 1 1 165 2L 3478760 3479202 GGCACCAAACTTATCTACG 58 3479331 3479349 ACTTGGTCTGCTTGATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10874 FBgn0031395 FBtr0077849 1 1 2 121 2L 2191942 2191960 TGACCTATGTGAATGAGCG 59 2190774 2191857 AACATCGGGAACTTTCAGG 59 NA Drosophila melanogaster 50 Or22b FBgn0026397 FBtr0077874 2 1 1 80 2L 1523516 1523676 CGCTTGATATTGGACTATGTC 58 1523716 1523736 AATACCGATCAAGAGGAACTG 59 NA Drosophila melanogaster 50 CG3662 FBgn0031285 FBtr0078012 3 1 2 231 2L 823534 823552 TGAAGGTCTACATGATGGA 57 823813 823832 GGTTGTGTTATCATATGGGT 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG1702 FBgn0031117 FBtr0077310 1 1 1 83 X 20339661 20339679 TCATTATCTTCCGGCTGAG 58 20340068 20340086 TGAAGTCTTCGGTCAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12701 FBgn0031071 FBtr0074808,FBtr0074807 3 2 2 60 X 19675007 19675026 CAGTCACCCTATCATCAGTC 59 19674966 19674984 CGTACTCCTGCTTGATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ste:CG33244 FBgn0053244 FBtr0073881 1 1 1 60 X 13945074 13945093 GTATTTCAGCGAGATACTGG 57 13945033 13945051 CAAGCCAGAGGAACTATCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Ptp10D FBgn0004370 FBtr0073525,FBtr0073524,FBtr0073522 3 3 3 91 X 11518239 11558771 TTACACTAAAGGACGTTCGA 58 11558824 11558843 ATAGTCCAGTCGATAGGAGG 59 NA Drosophila melanogaster 50 Klp10A FBgn0030268 FBtr0073478,FBtr0073475,FBtr0073477,FBtr0073476,FBtr0073479 1 5 5 93 X 11027534 11027552 TTGTGACCCTGAATATGCC 59 11027383 11027477 AGAAGATCGAAGACCTTGC 59 NA Drosophila melanogaster 50 CG3323 FBgn0029750 FBtr0070758 3 1 1 60 X 5198944 5198962 GGTGAATACACCACATGAC 58 5198902 5198920 TAGCTTATCATCACTGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tip60 FBgn0026080 FBtr0070668 2 1 1 133 X 4009236 4009360 ACTATAAACGACATCTGCGA 58 4009122 4009140 TGTTGCTCGATGATAACCC 59 NA Drosophila melanogaster 50 RpL36 FBgn0002579 FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156 2 4 4 115 X 522710 522793 CTTGAAGAACATCCAAACCC 59 522614 522632 TATCCTTGGACACCTTCAG 58 NA Drosophila melanogaster 50 Doa FBgn0053553 FBtr0113466 1 1 9 81 3R 24728521 24745224 ACTATCTAACAGCAAAGCC 57 24745269 24745287 CTGTGATGGAGAATGTCTC 57 NA Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113301,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 3 8 8 82 3R 24639525 24639610 GTTGACAATGAGTCTGATGC 59 24639653 24639673 CAATATCCGTAGCAGTAAGGA 59 NA Drosophila melanogaster 50 Cyp6a18 FBgn0039519 FBtr0085183 3 1 1 60 3R 23305686 23305705 GACAGTCGGTCATTATTCCA 59 23305727 23305746 GGTTCGGGATAAATACTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 e FBgn0000527 FBtr0084106 1 1 1 84 3R 17056439 17056457 CTTCTATAACAAGGCCGAC 57 17056312 17056394 CCAGATATCGTTCAGTATATCG 57 NA Drosophila melanogaster 50 cic FBgn0028386 FBtr0112787 3 1 2 192 3R 16122039 16122058 CATACAAGCTGAACAATGGT 58 16122210 16122828 GCTTCTTCATCTCTAAGATCTG 58 NA Drosophila melanogaster 50 CG17836 FBgn0038661 FBtr0083701,FBtr0113246,FBtr0083702,FBtr0083703,FBtr0083700 2 5 5 92 3R 14751507 14751633 AATGATGATCGGTTCGAGG 59 14751689 14751707 CTCTACGATGTCTGCATGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 htl FBgn0010389 FBtr0083548,FBtr0083550,FBtr0083549 1 3 3 60 3R 13872690 13872708 ATATCTTCGTCTTTGGCGG 59 13872648 13872666 GCATAGAACACAAACAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31190 FBgn0051190 FBtr0113397,FBtr0113398 3 2 4 175 3R 13308946 13309029 ATAAATGTGAATGAACCCGC 58 13308790 13308808 ATCTCCGCTATGCTAAACC 59 NA Drosophila melanogaster 50 His4r FBgn0013981 FBtr0082962,FBtr0082963 1 2 3 114 3R 10451846 10451864 TAACATCCAGGGTATCACC 58 10451941 10452024 AAGGAATACCTTTAGCACAC 57 NA Nonspecific Drosophila melanogaster 50 desat1 FBgn0086687 FBtr0082630,FBtr0082628,FBtr0082627,FBtr0082626,FBtr0082629 1 5 5 88 3R 8271987 8272005 GTCGATCTATCCGATCTGC 59 8272118 8272136 ATGATGAAGCAAGCAATCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33779 FBgn0053779 FBtr0091780 3 1 1 60 3R 4030132 4030150 GAGTTAAGACGGACTTTCC 57 4030090 4030111 TAGTATATTCCCTTTGGTAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gfzf FBgn0053546 FBtr0091512 2 1 2 162 3R 2972811 2973414 CTACGGCTCTATTGTACCC 58 2972667 2972685 CTTCGAGTACTCCTCAGAG 58 NA Drosophila melanogaster 50 CG3618 FBgn0037028 FBtr0078271 1 1 1 60 3L 20808837 20808857 ATCTATGCTCCACTAAGTCAG 58 20808797 20808815 GGATCTCAATTTCCTCGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Deaf1 FBgn0013799 FBtr0100666,FBtr0074882 1 2 2 210 3L 19812918 19812936 AAGTACAAGGACAAGTGGC 59 19821425 19821443 GTGTAAAGAGACGGACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6664 FBgn0036685 FBtr0100439,FBtr0075294,FBtr0075295,FBtr0075293 2 4 4 72 3L 17008132 17008150 CAAGACCAAGTGCAAAGTG 59 17007996 17008097 TTTGGCTTGAATGATGACTG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 2 8 8 121 3L 16956903 16956980 GATTCACAAGGGTCTATTGC 58 16957064 16957082 CATGGATTCCCTCCTTCAG 59 NA Drosophila melanogaster 50 CG13713 FBgn0042199 FBtr0073346 2 1 1 113 3L 4697704 4697723 CCACTGTCACCTATCATCTG 59 4697798 4697817 TATTGGATATGAGCTCGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32244 FBgn0052244 FBtr0073325,FBtr0073324 2 2 2 96 3L 4505303 4505413 TAAAGTTTGAACAGGTTCGC 58 4505226 4505245 CGGGTAGAGCTCTTTATGAG 59 NA Drosophila melanogaster 50 CG14968 FBgn0035431 FBtr0073087,FBtr0073090,FBtr0073089,FBtr0073088,FBtr0073086 1 5 5 79 3L 3300765 3300783 CAGTAGTACCACCGATCTG 58 3300029 3300047 CGGAACCAATGTACTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32306 FBgn0052306 FBtr0072894,FBtr0072892,FBtr0072893,FBtr0072895 3 4 4 84 3L 2464050 2464068 TGAAACTACCGCAGATCAC 59 2464115 2464134 GAGTAGTGATCCATGGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1275 FBgn0035321 FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906 1 4 4 62 3L 2253685 2253787 GTATGGCAACTCCATTCTG 58 2253641 2253659 AGCTTCAGAGTCTTCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 5SrRNA:CR33367 FBgn0053367 FBtr0086359 1 1 1 60 2R 15648567 15648585 AATACATCGGTTCTCGTCC 59 15648525 15648543 CTAAGTACTAACCGCGTCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34214 FBgn0085243 FBtr0112407 2 1 1 61 2R 20553148 20553166 CTTCGACAAGATCATGCTG 58 20553105 20553123 TGTTCTGATAGAAGACCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Xbp1 FBgn0021872 FBtr0071571,FBtr0071572 2 2 2 77 2R 17031706 17031724 GAAGCTAAAGAACCGTGTG 58 17031765 17031783 ATCTCGTAGTCCATCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086450,FBtr0100390,FBtr0100392 1 3 15 89 2R 15361465 15365132 GAGACAAATCTGTTCGATCG 58 15365184 15365202 AAAGGTTGAACGTGATGGA 59 NA Drosophila melanogaster 50 Vha44 FBgn0020611 FBtr0087175,FBtr0087173,FBtr0087176,FBtr0087174 3 4 4 85 2R 12214368 12214386 GATTTGGTCAAGAAGGAGC 58 12214239 12214319 TCATTAGCCATGACCTTGG 59 NA Drosophila melanogaster 50 cg FBgn0000289 FBtr0087526,FBtr0087528,FBtr0087529 2 3 7 108 2R 10064189 10065378 CAAGAACTGTGACATACTTCC 58 10065448 10065466 CTCCAACTTTAGGTTGGGT 59 NA Drosophila melanogaster 50 CG8233 FBgn0033897 FBtr0087582,FBtr0087584,FBtr0087583 2 3 3 83 2R 10037317 10037743 TTTGTTCCTCACAATGATGC 59 10037253 10037271 AGTTATCACCTTTGGCAGG 59 NA Drosophila melanogaster 50 cag FBgn0017414 FBtr0088239 2 1 1 60 2R 6781279 6781297 ATTGGAAAGACACAAGCAG 58 6781237 6781256 ACAGACCCTCTTTAATCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0089345,FBtr0089343 2 2 26 189 2R 6419762 6419780 TGTTGAGGATTTGACACTG 57 6393565 6419549 CGTAATACTCAGATCTTGGG 57 NA Drosophila melanogaster 50 osp FBgn0003016 FBtr0089865,FBtr0089866,FBtr0114465 1 3 3 106 2L 14605240 14610697 GATCACAAATCGGGTTTCC 58 14605152 14605171 GACTCAGATTCGTTATGGTG 58 NA Drosophila melanogaster 50 CG17646 FBgn0031362 FBtr0077886,FBtr0077885 2 2 2 93 2L 1747846 1748777 CTGTGGTCTTGACATTTCC 58 1748834 1748852 ATCAACGAGAGGAAGTAGG 58 NA Drosophila melanogaster 50 ia2 FBgn0031294 FBtr0089789,FBtr0089790 2 2 2 80 2L 1014710 1014791 TATCACATCTATGAGGTTCACC 59 1014651 1014671 GTTCTTCAGGTAGAAAGAACG 58 NA Drosophila melanogaster 50 jar FBgn0011225 FBtr0100171,FBtr0100172,FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173 2 6 6 82 3R 20082819 20082909 ACGGTTATCATGGTTCCTC 59 20082755 20082774 AATAGTCGACTGTAGATGGC 58 NA Drosophila melanogaster 50 CG11391 FBgn0038732 FBtr0083789 1 1 1 63 3R 15605145 15605341 GAAATGCACAGCTATCTGG 58 15605368 15605386 TTAGCCAATCCAATGTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34303 FBgn0085332 FBtr0112499 2 1 1 222 3R 5977270 5977346 CCATATCAGAGGTTGAGATCC 59 5976999 5977017 GGAGACCAATTCCACAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6767 FBgn0036030 FBtr0076416,FBtr0076415 3 2 2 147 3L 9677737 9677755 TGTATGCTATTCTGACGCA 58 9677545 9677626 GAGACATCAATGCACTGGA 59 NA Drosophila melanogaster 50 pita FBgn0034878 FBtr0072113,FBtr0072112 1 2 2 132 2R 19437404 19437478 GTCATGAGACAGTCCACTC 59 19437290 19437308 CAGTACTTGCAGGGATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15097 FBgn0034396 FBtr0086631 3 1 2 206 2R 14712073 14712225 CTATGCGATGTTCAACGAC 58 14711885 14711903 AGCAAGAACTTACAGCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Cyp6a23 FBgn0033978 FBtr0087452 1 1 1 74 2R 10764395 10764413 AACGAGTTTACCTACGAGG 58 10764451 10764534 ATACTTGCGAAGGGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11196 FBgn0033248 FBtr0088870 3 1 1 129 2R 3882127 3882145 AGTTAGTTCCAAGATGGCC 59 3881846 3882034 GTAGTTACGTCGCTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14591 FBgn0033054 FBtr0086026,FBtr0086025 1 2 2 60 2R 1925264 1925338 TACATTATCCGAAGCGGAG 58 1925222 1925240 TATGTGACCAGTGGAACTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5945 FBgn0032494 FBtr0080450 3 1 1 170 2L 13240690 13240708 GTGAATTCAACGTAACGCT 58 13240894 13241506 TATCCAGTTCAGGATCTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17261 FBgn0031501 FBtr0077656 3 1 1 70 2L 3043044 3043063 AACATAAACCTACGTTGCTG 58 3043096 3043191 CACAGAAGAGCACATTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me28S-C2645c FBgn0082936 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG17159 FBgn0039945 FBtr0113720,FBtr0113717,FBtr0113718,FBtr0113721,FBtr0113719 1 5 5 60 XHet 67548 67566 TACTCACTTAAATCGCCCA 58 66298 66316 TTATAGACGTTTGATGCGG 57 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 snoRNA:Psi28S-3436b FBgn0086602 FBtr0091803 1 1 1 118 X 6636490 6636508 ACTAGGTGGTTATCCTCCA 58 6636390 6636408 CAAGGTTCAGGTAGAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32660 FBgn0052660 FBtr0073592 2 1 1 63 X 11814477 11814495 ACAACTCGTTTCGTAACGA 59 11814360 11814451 CGCATGAAACTCAATTACAC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG41482 FBgn0084042 FBtr0111177 1 1 1 90 X 22092691 22092709 ATGCAGCAAAGAAGTATGG 58 22083318 22092638 AGTGTACTGTAGGGTATCCT 58 NA Drosophila melanogaster 50 CG12564 FBgn0031179 FBtr0077216 1 1 1 70 X 21306509 21306527 ACGACTACAACACATGGAC 59 21306457 21306475 CTGACACATGTATTTGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077204,FBtr0077206 2 2 8 175 X 21247655 21247673 ATATGTTCCAGCGAGAAGC 59 21251117 21251692 CCAAAGGATCTTAGCCTCTC 59 NA Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077207,FBtr0077204,FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077206,FBtr0077210 2 8 8 103 X 21253980 21254060 CAACACGATTGTAAAGGCTG 59 21254126 21254144 TCATTTCCAGGGTGATACG 59 NA Drosophila melanogaster 50 CG17068 FBgn0031098 FBtr0077341 2 1 1 60 X 20120077 20120095 TATCCCATGTACTCCTGTG 57 20120035 20120053 CGTTGAACATGAACTTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sw FBgn0003654 FBtr0089398 1 1 13 84 X 20105884 20105902 TGGTCTACACAAAGCAGAC 59 20101661 20104507 TCGTCGTCTCCATAATAATCC 59 NA Drosophila melanogaster 50 CG14235 FBgn0031066 FBtr0074817,FBtr0074815,FBtr0074816 3 3 3 195 X 19638353 19638371 CATCGCTATAGCTATCGCC 59 19635080 19635098 GGAAGTCGATGTACGACTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14235 FBgn0031066 FBtr0074817,FBtr0074815,FBtr0074816 1 3 3 188 X 19638353 19638371 CATCGCTATAGCTATCGCC 59 19635087 19635105 GATGTACGACTGGTAGCAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Mec2 FBgn0030993 FBtr0074669 2 1 1 265 X 19083572 19083682 CGTTGAGATCAAGGATGTC 57 19083990 19084008 GATACGGAGTAAGCAGCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG34329 FBgn0085358 FBtr0112531 1 1 1 69 X 18944763 18944781 TCTCACTGGAAACTATGGC 58 18944812 18944832 GGTGCTTATCAAGTTGATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6696 FBgn0030947 FBtr0074611 2 1 1 84 X 18554696 18555284 CATAGAGCCATTGGATCCG 59 18554630 18554649 GTACATCTCGTTTAGCTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG15042 FBgn0030937 FBtr0074619 2 1 1 60 X 18421127 18421147 TACATAAACATCCTAGAGGGC 58 18421087 18421107 TGATATCGCTTCGTAGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CrebB-17A FBgn0014467 FBtr0074555,FBtr0074556,FBtr0112879,FBtr0074554,FBtr0074557,FBtr0112877,FBtr0112878 1 7 7 160 X 18267097 18267115 GGAGTCATACAGACAGCAG 59 18267324 18267342 TTACACGGAAAGGTTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Taf8 FBgn0022724 FBtr0074514 1 1 1 80 X 17996670 17996688 CAAAGTTCCTCTGCAAGAC 58 17996732 17996805 GTTTGCAGGCAATTAAAGG 57 NA Nonspecific Drosophila melanogaster 50 ppk23 FBgn0030844 FBtr0112998,FBtr0100574,FBtr0074491 3 3 3 125 X 17462376 17462395 TTCAACAGTCGTTTCAAGTC 58 17462088 17462223 GATAAAGATACGTGAAGTGCTG 59 NA Drosophila melanogaster 50 Fim FBgn0024238 FBtr0074443,FBtr0074441,FBtr0074442 2 3 3 117 X 17182047 17182065 CTCAATCTAGCCTTCGTGG 59 17181556 17181966 AATTGCGGTAGGTCTTCTC 59 NA Drosophila melanogaster 50 CG5070 FBgn0030824 FBtr0074389 3 1 1 76 X 17097390 17097408 GGATCTGGCTATGGATCAG 58 17097447 17097466 GATACCTTGATCACCTTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mei-218 FBgn0002709 FBtr0100640,FBtr0100639 1 2 2 89 X 17033337 17033420 TCTAGATTGAGCCAAAGACG 59 17033267 17033285 AGGATTTGGTAGTTGCTCG 59 NA Nonspecific Drosophila melanogaster 50 Cap FBgn0015615 FBtr0074291,FBtr0074290 2 2 2 95 X 16483582 16483674 GATGAGATAGATCAGGCGC 59 16483505 16483523 CGTTGTCGTAATGAACTGG 58 NA Drosophila melanogaster 50 eIF-2alpha FBgn0004925 FBtr0074300 3 1 1 76 X 16340721 16340739 CAACAAGCTGATTCGTGTC 59 16340663 16340681 GATCGATGTAGCCCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nonA FBgn0004227 FBtr0100586 2 1 3 143 X 16259517 16259535 ATAGCAATTCGCCATTCGA 59 16259713 16259733 CCACAGATCTATTGGTTACTG 57 NA DesignNoJunction Drosophila melanogaster 50 Chc FBgn0000319 FBtr0112798,FBtr0074180,FBtr0112797,FBtr0074182,FBtr0074181,FBtr0074179 2 6 6 93 X 15722670 15722757 CTTTATCAGTGTTACGACTTGC 59 15722598 15722616 GAATCAAATAGGGCATGGC 58 NA Drosophila melanogaster 50 mRpL3 FBgn0030686 FBtr0074090 3 1 1 193 X 15655384 15655404 TAATCAATTACTGGGTCTCCG 59 15655679 15655697 CAAAGTTATTGGTGCCCAC 59 NA DesignNoJunction Drosophila melanogaster 50 Graf FBgn0030685 FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197 2 6 6 81 X 15646356 15646434 TAACCAATGTTCGTTACTCC 57 15646294 15646312 TAGTTCTCCGGAATGAGTC 58 NA Drosophila melanogaster 50 CG15601 FBgn0030673 FBtr0074055 1 1 1 60 X 15605878 15605898 CTTATTATATTCGGCCAGAGC 58 15605918 15605938 GAGAATATGAATCCGGAATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8119 FBgn0030664 FBtr0074051 1 1 1 60 X 15556959 15556978 CAAGCTAATTCTACATCCGC 58 15557001 15557019 TTTGAATGCCGAATAGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15028 FBgn0030618 FBtr0112985 1 1 2 60 X 15075468 15075487 CTATGGGCCTCATTATTGTC 57 15075508 15075528 ATAGCGCAGTACATAGATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fbxl4 FBgn0030555 FBtr0073923 2 1 1 102 X 14129631 14129703 AATCTGATAGAGTTGAGCCTG 59 14129549 14129567 GAAAGAGATCGAGACGCTC 59 NA Drosophila melanogaster 50 mew FBgn0004456 FBtr0073731,FBtr0073732 2 2 2 83 X 13109887 13109963 AATAACATAGAGGTGGAGACG 59 13109824 13109842 GATGATAATCAGCCACGGT 59 NA Drosophila melanogaster 50 CG15730 FBgn0030395 FBtr0073667 1 1 1 60 X 12390170 12390190 CAGTGATAATAGTCGTCCTCC 59 12390130 12390148 GCAGAGTTCCTTATTCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11245 FBgn0030388 FBtr0073646 3 1 1 60 X 12337554 12337573 TCTGACCAGGATTAACTCAC 58 12337596 12337614 TGAACCATAACTCGGTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34323 FBgn0085352 FBtr0112525 1 1 1 60 X 11964609 11964627 CCTGGGTATTGAAGTACGA 58 11964648 11964669 CCCTGATTAACGTGAATAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2446 FBgn0030328 FBtr0073615,FBtr0073618,FBtr0073619 2 3 5 95 X 11607717 11607801 CAGGAGACTAAACACCAGC 59 11607640 11607658 GGTGGTATCGCTGTATCTC 59 NA InUTR Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0112813 1 1 12 81 X 11296749 11296767 TCTACAGGGTGGAGTTACC 59 11296812 11299316 TCCTCGGAAGGATAGTCAG 59 NA Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 3 8 9 95 X 10692567 10692660 GAATAAGGGTGAAATTTGCC 57 10692491 10692509 TGCATGATCCGTTTAATGG 58 NA Drosophila melanogaster 50 Gip FBgn0011770 FBtr0071472 3 1 1 60 X 10223470 10223488 GCAAGATTCATCTAACCGC 58 10223428 10223447 GTCTTCGTGTAGTCACTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34319 FBgn0085348 FBtr0112521 3 1 1 190 X 10150175 10150193 CTGAGTCGCTATTTGATGG 57 10149162 10149180 ATCTCAAAGTCCAGCAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2974 FBgn0030178 FBtr0071488 2 1 1 91 X 9979879 9979897 AAGTTCAGTGTGGATCAGC 59 9979806 9979824 ATTCGTGGATGCTTCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1354 FBgn0030151 FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386 3 4 4 161 X 9674775 9674793 TCTGCTCAAGAACTTGGAC 59 9674918 9675202 AAGGCCTCAATATCATGGG 59 NA Drosophila melanogaster 50 CG34028 FBgn0054028 FBtr0100083 3 1 1 60 X 9405864 9405885 GCGAGGTTAATATCTATCGGAG 59 9405903 9405924 GAATATGGCTCGAGTTTATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12111 FBgn0030050 FBtr0071232 3 1 1 60 X 8464755 8464775 ATTCCATCGGAGATTGATACC 59 8464715 8464735 CGATGTAGTAATAGTTGTCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15336 FBgn0030009 FBtr0071156 2 1 1 60 X 8042079 8042097 ATAATCGGCGACTTATGTG 57 8042121 8042139 TGCAGATTCCAATAGATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gclc FBgn0040319 FBtr0071108,FBtr0071107 2 2 2 111 X 7997904 7997923 CCATTGAACAGTATCTTCGC 58 7997746 7997830 GAATCCTGCTTGTAATCCG 58 NA Drosophila melanogaster 50 CG1530 FBgn0029983 FBtr0071097 1 1 1 82 X 7834384 7834405 GGACATTTAAGTTCGAGTTTCC 59 7834447 7834536 GAGGTGTTCCTTGTAATCCT 59 NA Drosophila melanogaster 50 CG8300 FBgn0029937 FBtr0071015 2 1 1 141 X 6999960 6999979 AATTGGAGAACTACCACAGG 59 7000083 7000101 CATAGGACGATGGTTTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Smg1 FBgn0052743 FBtr0070972 3 1 1 133 X 6728096 6728116 GTCGGAGATCTTAAGTACCAC 59 6728211 6728294 ATCAGCTCAGTCTTGTTGG 59 NA Drosophila melanogaster 50 COQ7 FBgn0029502 FBtr0070963 1 1 1 147 X 6666725 6666743 GTCAGATAATGGAGGCACC 59 6666917 6666935 TTGATTACCTCGGTCATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3367 FBgn0029871 FBtr0070920 1 1 1 117 X 6361762 6361846 CAGGATCACAGACCTAGTG 58 6361663 6361681 CAAAGAACATGGTCTGGTG 58 NA Drosophila melanogaster 50 Marf FBgn0029870 FBtr0070909,FBtr0070910,FBtr0070908 1 3 3 102 X 6262083 6262570 AGGAATCGGTTAAGTCTCAG 58 6262635 6262653 ACGAAGAATACCCTTTCGG 59 NA Drosophila melanogaster 50 CG5941 FBgn0029833 FBtr0070867 3 1 1 115 X 5932573 5932591 CTCCTCACGTTATCCACAC 59 5932980 5932998 TATTTCGCCTACTTCACGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15766 FBgn0029813 FBtr0070832 2 1 1 151 X 5709770 5709788 GATTGCCGATGACATTGTG 59 5709637 5709656 ATAGCAGAAACTCCTTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070740,FBtr0100408 3 2 4 220 X 4961634 4961652 CTCCACAATGATTACGCTG 58 4962190 4962208 CGTTCACAAACTCAAGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 l(1)G0334 FBgn0028325 FBtr0070708,FBtr0070710,FBtr0070709,FBtr0070711 3 4 4 165 X 4598543 4598632 AAGTTAAGGCCATCGATCTG 59 4598757 4598778 TGGATGTGATCAATATCGTAGG 59 NA Drosophila melanogaster 50 Cyp4d1 FBgn0005670 FBtr0070428,FBtr0070427 1 2 2 103 X 2053587 2053665 CGAGATCAATGGAAAGCTC 58 2053502 2053520 GCTTGAAGATATTGGGCTC 58 NA Drosophila melanogaster 50 ph-p FBgn0004861 FBtr0070432 2 1 1 60 X 2021131 2021150 CTGTCTGTAGTCACTTCTGG 59 2021090 2021108 GACGATCTGTTCCATTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 a6 FBgn0023130 FBtr0070279 1 1 1 137 X 1589105 1589123 ACAGCATCCTGATAACCAG 59 1588986 1589004 TTACCTCTTCGATGGTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14777 FBgn0026872 FBtr0070253 2 1 1 94 X 1362358 1362376 GAAGACCTTTAGTCAGGCC 59 1362498 1362516 TAATGGTCTGCAGGATAGG 58 NA DesignNoJunction Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 3 8 8 61 X 551391 551410 CATTATCTCATGGGATGCAG 58 551433 551452 ATATCAGCTCAAACAGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18273 FBgn0029525 FBtr0070094 3 1 1 125 X 378441 378459 AATAGGGATCCAGAGACAG 57 378271 378352 ATAGTTCAACGAGTGACCA 58 NA Drosophila melanogaster 50 CG13375 FBgn0040370 FBtr0070103 2 1 1 107 X 180915 180990 ATTACCCAGGTGTTCAAGG 59 180826 180844 ATTGTTACCAATCTGCTGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG17691 FBgn0039993 FBtr0113759,FBtr0113758,FBtr0113761 3 3 4 60 U 1179267 1179286 AATCTACGGGATAAGTACGG 58 1179309 1179327 TTCCTTGCTCACATAAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 myoglianin FBgn0026199 FBtr0089093,FBtr0089092,FBtr0089095,FBtr0089094 2 4 4 86 4 714058 714079 CCTATTAATACCAACGATGAGG 58 713456 714011 ATGAGGTTGAATTTCCTCG 57 NA Drosophila melanogaster 50 CaMKI FBgn0016126 FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065 2 6 7 96 4 467853 470559 TTTGAGAAGGTTCAGTGCA 59 470889 470910 CTCATACGTTTCTAAGAGTTGC 59 NA Drosophila melanogaster 50 snoRNA:Psi28S-2442b FBgn0082988 FBtr0113581 2 1 1 95 3R 1424239 1424257 CAACAACTCAATCGGTGTC 59 1424162 1424181 AAATCTTTAGATTGCTGGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ef1alpha100E FBgn0000557 FBtr0085834,FBtr0085835,FBtr0085833,FBtr0085832 1 4 4 116 3R 27567452 27567470 CTTCAACGTGAAGAACGTG 59 27567550 27567645 TTGAGCACAATCACCTGAG 59 NA Drosophila melanogaster 50 CG15548 FBgn0039812 FBtr0085731 3 1 1 60 3R 26785969 26785987 TTCATCGCAATCGGATAGG 59 26786008 26786029 CTTCAATCTCTGATTTCTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34041 FBgn0054041 FBtr0100096 2 1 1 84 3R 26334331 26334401 GAATTTAGTCCTTTGGAGTCTC 58 26334446 26334464 TATTTAGCCAGTTCTCCGC 59 NA Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634 2 4 5 103 3R 26212311 26213196 AGATTTCAAGTGCTCCCTG 59 26212226 26212244 TGATCTCCTCCTGGATCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 spn-A FBgn0003479 FBtr0085589,FBtr0085590 1 2 2 60 3R 25881272 25881290 CAAGGAGCTGGATAAACTG 57 25881230 25881250 AAAGATCTCGGTAATGGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sry-alpha FBgn0003510 FBtr0085557 2 1 1 60 3R 25868295 25868315 CGCCTTAAGATACTGTACTCC 59 25868334 25868355 GATTATCCCTGCATATCAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF2B-alpha FBgn0039726 FBtr0085508 3 1 1 136 3R 25760961 25760979 ATGGCTGCCGTATATTGAC 59 25760788 25760861 CTTAACCATCTCTTCGCCA 59 NA Drosophila melanogaster 50 CG1907 FBgn0039674 FBtr0085447 1 1 1 60 3R 25446156 25446174 GATTCACGCCCTACTACTG 59 25446196 25446216 TCCAGAATAATGAAGGTCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11897 FBgn0039644 FBtr0085387,FBtr0085386 2 2 2 80 3R 24986115 24986197 CGAAACGATTTGCAAATCTC 58 24986238 24986258 CTGATATCCGTCTGATTTGTG 58 NA Drosophila melanogaster 50 CG11877 FBgn0039636 FBtr0085370 2 1 1 212 3R 24943568 24943586 TGGACTCCCTACTAATCGG 59 24943824 24943842 TCTGCGATCATTTGATCCA 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 beta4GalNAcTB FBgn0039625 FBtr0085419 3 1 1 60 3R 24859502 24859522 CATCGAGGAATCAAAGATCGA 59 24859462 24859480 CTGGGAGACATTTCTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1894 FBgn0039585 FBtr0085290 1 1 1 60 3R 24310597 24310615 GCCAAAGTGCTTCTAAGTC 58 24310638 24310657 TGAAGAGATGAATCGTTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12885 FBgn0039523 FBtr0085185 2 1 1 300 3R 23356800 23357017 TGATGAAGCTGCAATACCA 59 23357281 23357299 TAGTAAACAGGATGGCCAG 58 NA DesignRelaxed Drosophila melanogaster 50 mrt FBgn0039507 FBtr0085174 1 1 1 135 3R 23104813 23104907 TGATATAGGCTATGAGACGAC 58 23104698 23104716 CACTATAAACGGCAAGTGG 58 NA Drosophila melanogaster 50 CG14253 FBgn0039467 FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074 1 5 5 81 3R 22809875 22809893 GTATGCCTATGGAAGGCAG 59 22809935 22810014 CGGTAACTTAAAGATTTGGCTC 59 NA Drosophila melanogaster 50 CG5521 FBgn0039466 FBtr0085069 3 1 1 95 3R 22796538 22796617 GGTGTCAGATACTTCTTACTG 57 22796673 22796692 AATAAGACCAGGGATAAGGT 57 NA Drosophila melanogaster 50 ball FBgn0027889 FBtr0085095 2 1 2 115 3R 22692030 22692048 GTGGGTGAGAAGAACTACG 59 22691877 22691895 AACTGTTTGATGTCCTCCA 58 NA DesignNoJunction Drosophila melanogaster 50 Ald FBgn0000064 FBtr0085001 3 1 6 201 3R 22082687 22082705 AAGAAGGAGAACATTGCTG 57 22081879 22081897 TTGGGATATAGCTTCGCTC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 m1 FBgn0002578 FBtr0084957 2 1 1 60 3R 21840894 21840912 GTCAAGGAATGCTTCAAGC 59 21840936 21840954 TTCCATTGGTAATGCACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst57Db FBgn0011669 FBtr0084915 3 1 1 68 3R 21656518 21656536 ATCCACATCAATAGTCCCA 57 21656468 21656486 TATTGAATTCTGTGCCTGC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG10553 FBgn0039324 FBtr0084853 2 1 1 166 3R 21142945 21143025 TAAATGATCTGCGCATTGTC 58 21142798 21142818 ATCGACAAAGTAGGTATCCTG 59 NA Drosophila melanogaster 50 danr FBgn0039283 FBtr0084780 2 1 1 76 3R 20964604 20964622 TGAGTGTTAAGAACTGGGC 59 20964662 20964680 CTTATCGTTCACTTGCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11844 FBgn0046214 FBtr0084775,FBtr0084777,FBtr0113354 3 3 4 85 3R 20949829 20950321 ATAGAACTGGCGTCAAGTC 59 20950370 20950388 TAAGTCCTCAATGTCCTGC 58 NA Nonspecific Drosophila melanogaster 50 Ets96B FBgn0039225 FBtr0084697 2 1 2 136 3R 20619263 20620058 GGTACAATGTGAATGTCAAAGG 59 20620154 20620324 TGGAAATCTGTAGCAGTACG 59 NA Drosophila melanogaster 50 CG31128 FBgn0051128 FBtr0084638 1 1 1 62 3R 20295265 20295283 CCTCTATGCTCAAACTGCA 59 20295309 20295327 AAATAGGCCAGAATGGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rox8 FBgn0005649 FBtr0084592,FBtr0084591,FBtr0084593,FBtr0084594 1 4 4 83 3R 19871216 19871234 TATTCCAACTACCAGGCAG 58 19870980 19871169 CCAGTTGACCTTGATTTCC 58 NA Drosophila melanogaster 50 CG10157 FBgn0039099 FBtr0084435 3 1 1 84 3R 19505325 19505344 GACATTCTGAGGAAGTACGG 59 19505388 19505467 CGTTATAAACGTTATCCAGAGC 59 NA Drosophila melanogaster 50 CG10175 FBgn0039084 FBtr0084423,FBtr0084421 1 2 3 103 3R 19350706 19351230 AAGATCTCTGCGGAAAGAG 59 19350621 19350639 TATAGTAGCCTCCTCGCTC 59 NA Drosophila melanogaster 50 CG13850 FBgn0038961 FBtr0084231 2 1 1 98 3R 18234854 18234872 AATGGAATGCTAGATGCCC 59 18234721 18234793 GCACAGTGCATCTATAAGGA 59 NA Drosophila melanogaster 50 CG7059 FBgn0038957 FBtr0084221,FBtr0084219,FBtr0084220 3 3 3 140 3R 18217574 18217648 AGCACATTGAGGGAATCTC 59 18217750 18217770 GCCTAATATACTCCTGATCCC 58 NA Drosophila melanogaster 50 CG7071 FBgn0038949 FBtr0084211,FBtr0084212 3 2 2 184 3R 18189675 18189693 ATTGAGTCCTGTGATCTGC 59 18189839 18189928 AGGCTCTTAATCTGATAGCTG 59 NA Nonspecific Drosophila melanogaster 50 CG34034 FBgn0054034 FBtr0100089 3 1 1 119 3R 17564482 17564500 TTGGTCTACCTAGTGAGTC 57 17563392 17563410 GCAGTGGTTTAAACTCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7922 FBgn0038889 FBtr0084109 2 1 1 64 3R 17309566 17309680 CAACACTTTCAGGCAAACC 59 17309707 17309726 ATTACGGATTCACGGTACTC 59 NA DesignRelaxed Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0114359 3 1 22 82 3R 17200833 17200851 CAGTCCCAGAACTACAGTG 59 17196937 17200787 TCGTAGGTGAGAACTTGAG 58 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0110937,FBtr0112915 3 12 12 137 3R 17037304 17037479 GATGTGATTAATCTCGCCG 58 17037580 17037598 TTCCATGATCGTGTAGAGC 59 NA Drosophila melanogaster 50 Atpalpha FBgn0002921 FBtr0089510 3 1 8 108 3R 16774534 16787937 TTAAGGTCGGATTACGAGC 59 16788009 16789456 TGCGTCTTGACTTGTACTG 59 NA Drosophila melanogaster 50 CG3822 FBgn0038837 FBtr0083987 1 1 1 86 3R 16687386 16687460 TCTTTAGGGACTCAAAGATCTC 58 16687321 16687339 CATTGCTGGCTGTAAAGAC 59 NA Drosophila melanogaster 50 CG17270 FBgn0038828 FBtr0083994 1 1 1 60 3R 16643045 16643066 TTAACTTCTACGTGATCTTCCC 59 16642912 16642930 TAGATGAGGCCCAGTAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Elongin-B FBgn0023212 FBtr0083947 3 1 1 84 3R 16404507 16404646 TTGACATTCAGGAACGAGG 59 16404441 16404459 TCATGACTTCGGGTAAGTC 58 NA Drosophila melanogaster 50 CG4360 FBgn0038787 FBtr0113252 1 1 2 127 3R 16152109 16152127 TTACCAACCACCTCAAGAC 59 16151913 16151931 TTGTTGAAGTTAGCATGCG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Rh3 FBgn0003249 FBtr0083876 2 1 1 60 3R 15907847 15907867 TATACTGGTCATCAATCTGGC 59 15907807 15907826 GAATATCGGAGTCTTGACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4572 FBgn0038738 FBtr0083861,FBtr0083860,FBtr0083862 1 3 3 60 3R 15688809 15688827 GTGGGCAATAAGACATTCC 58 15688767 15688786 TCTTCAAGTGAAGTTCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31226 FBgn0051226 FBtr0083675,FBtr0083676 2 2 2 222 3R 14677345 14677363 TATCCTTGCTATCCTTGCG 59 14677088 14677159 TTGCAAGAGATGTTCAGCA 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 PKD FBgn0038603 FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592 3 4 4 203 3R 14131625 14132352 AGCAGCTCACTGAATATCC 59 14131440 14131458 CTTGTGCGTATTGTACTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG7217 FBgn0038570 FBtr0100620,FBtr0100619 2 2 2 61 3R 13992156 13992174 TGTCGTGCAAATTTCTTGG 59 13992113 13992132 CAGTGAAATGATTTGTTGGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17803 FBgn0038547 FBtr0083528 3 1 1 80 3R 13626492 13626512 TCAGGATCTATATGACAGGGT 59 13626232 13626451 ACTCCTTGTTGTATCCACAC 59 NA Drosophila melanogaster 50 CG31190 FBgn0051190 FBtr0089444,FBtr0113397,FBtr0089443 3 3 4 90 3R 13307713 13307894 ATTGTTACCTGGCAGATCC 59 13307641 13307659 TGATGTTCTGCTTCTCCTC 58 NA Drosophila melanogaster 50 CG34279 FBgn0085308 FBtr0112474,FBtr0112475 1 2 2 66 3R 13228451 13228647 TACCAGAAGGATTATCGCA 57 13228403 13228422 CTAGAAGTTCGTCGTTACTG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG5246 FBgn0038484 FBtr0083405 2 1 1 60 3R 12961959 12961977 GATCCTGTCTCAATGTTCG 57 12962000 12962019 ATGATTTAACTGGTGACGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fas1 FBgn0000634 FBtr0083333 1 1 4 110 3R 12460096 12461277 TCGTTCAAGGAGAATGCTG 59 12461351 12461369 AATGGTCACTTCTGTCAGG 59 NA Drosophila melanogaster 50 CG6006 FBgn0063649 FBtr0113476 1 1 2 120 3R 11995751 11995823 TACCTCTTAACAAGATCGAGG 58 11995905 11995923 TGGTTGTCTGTCTTCTGAC 59 NA Drosophila melanogaster 50 CG18519 FBgn0038348 FBtr0083153 2 1 2 90 3R 11366293 11366380 TCTTATAAGATCTTGCCCAGAG 59 11366224 11366242 CAATCCTGTGCTGAATGTC 58 NA Drosophila melanogaster 50 Rh6 FBgn0019940 FBtr0083146 2 1 1 60 3R 11309219 11309240 GTGATGTACATCTTTACCTCGT 59 11309261 11309279 TGACCACAAACATGTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS10 FBgn0038307 FBtr0113237 1 1 3 83 3R 11056745 11056763 CAAATCCTTATACACCGCC 58 11056810 11056894 TTTGTAATGGAGGTTTCGG 57 NA Nonspecific, InUTR Drosophila melanogaster 50 CG7530 FBgn0038256 FBtr0083020,FBtr0083021,FBtr0083019 2 3 3 105 3R 10551835 10551853 AGTTCAACCCGTACATTCG 59 10551639 10551767 CTCCAGATGTTGATCGTCTC 59 NA Drosophila melanogaster 50 CG31313 FBgn0051313 FBtr0082982 3 1 1 82 3R 10392940 10392960 GACTTATCCAAGGCTAAGGAG 59 10392720 10392899 TTCACTACCTGATAATTGGGAC 59 NA Drosophila melanogaster 50 CG9649 FBgn0038211 FBtr0082902 3 1 1 84 3R 10041784 10041802 TCCACGAACAGTACAATCC 59 10041651 10041737 TAATCGCCAATATCAACGTG 58 NA Drosophila melanogaster 50 primo-1 FBgn0040077 FBtr0091749,FBtr0091747 2 2 3 104 3R 9536371 9536453 TTTGTTTGGGCAACATCTG 59 9536285 9536303 CAATTGCTGCACTATCGAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG9611 FBgn0028487 FBtr0082846,FBtr0112939,FBtr0082847 2 3 5 158 3R 9522676 9522694 AAGACTCTGCACGATAGAG 58 9522056 9522556 TCGTAGTTTGTATCTATCCGG 58 NA Drosophila melanogaster 50 sqd FBgn0086897 FBtr0082857 3 1 4 80 3R 9470130 9470148 GAGGATATGCAACCCTCTC 59 9468919 9470087 GACAAACAGTTTCCATCAGC 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG9759 FBgn0038160 FBtr0082861,FBtr0082862 3 2 2 73 3R 9434792 9434810 TCTGGCGGATGTAAATCAG 59 9434737 9434755 CGAATCCAAATTGTCTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsc70-2 FBgn0001217 FBtr0082707 2 1 1 60 3R 8871642 8871660 GAGGATCATCAATGAGCCC 59 8871681 8871702 CTTAAGATTCTTATCCAGCCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12267 FBgn0038057 FBtr0082635 3 1 1 80 3R 8287891 8287967 TCGCAGAGATTGTTGAGAC 59 8288010 8288029 TTGACAAGGTCTTTATGCGA 59 NA Drosophila melanogaster 50 dpr17 FBgn0051361 FBtr0082543,FBtr0082542 1 2 2 99 3R 7936143 7936161 GATTAGCGATAGTGACGAG 57 7936224 7936318 AATTAATGAGCCGATCGTG 57 NA Drosophila melanogaster 50 CG31368 FBgn0051368 FBtr0082477 2 1 2 81 3R 7717449 7717470 TATATGTATTTGGCAGGGTCTC 59 7717510 7717598 CTCAACTTCAAAGGTCTAAGC 58 NA Drosophila melanogaster 50 CG6834 FBgn0037935 FBtr0082438 3 1 1 84 3R 7511673 7511743 AACTGAAAGATCACACTTCC 57 7511608 7511627 TTAACGTCCGTAAAGTTGTC 58 NA Drosophila melanogaster 50 Ranbp9 FBgn0037894 FBtr0082386 1 1 1 86 3R 7239747 7239823 TTCTCCTGGCTATTAACGA 57 7239873 7239891 CATCAGCCACACTAAAGTG 58 NA Drosophila melanogaster 50 CG6689 FBgn0037877 FBtr0082368 1 1 1 154 3R 7045009 7045087 TAAGTGGTGTCTGGATCAG 58 7044873 7044891 CTGCACTTCATCAGTTGAG 58 NA Drosophila melanogaster 50 CG18577 FBgn0037870 FBtr0082341 3 1 1 73 3R 7022480 7022498 CAGAGCGTTTAAACGAACC 59 7022533 7022553 GAAATTCGATGGCCTATAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14694 FBgn0037845 FBtr0082298 2 1 1 111 3R 6684643 6684661 GATACAATGGAGCTTGTGG 58 6684496 6684568 ATTCCAGGCTATTGTTGGT 58 NA Drosophila melanogaster 50 fau FBgn0020439 FBtr0082308 1 1 4 63 3R 6599527 6599545 TACAACTACAGCACAGAGC 59 6599482 6599500 AAGAATAGCTGTAGCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp12e1 FBgn0037817 FBtr0082249 1 1 2 105 3R 6261643 6261661 TGGTTTGGAAACTAGCCTG 59 6261730 6261806 TACAAGAGTAGGATCCGCT 59 NA Drosophila melanogaster 50 CG18545 FBgn0037812 FBtr0082234 2 1 1 71 3R 6167232 6167251 CTACGTAGCTAGTGTTTGGA 58 6167285 6167303 GTTGTTTCAACTGCAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Best1 FBgn0040238 FBtr0082183,FBtr0114590 3 2 2 80 3R 5991953 5992985 CAAATTGCTGCTCAGATGG 59 5991891 5991912 GCATAGTAAATGGTCAAGAAGG 59 NA Nonspecific Drosophila melanogaster 50 CG9471 FBgn0037749 FBtr0113211 3 1 2 171 3R 5597068 5597087 CAACGCATTGCTATTATTGG 57 5596861 5596879 CATCCTCGTAGTTGGTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9471 FBgn0037749 FBtr0082160,FBtr0113211 1 2 2 79 3R 5597058 5597076 TATTATTGGAGGAACCGGC 59 5596942 5596960 ATAGCAATTTCACCGACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-47 FBgn0024833 FBtr0082114 1 1 1 60 3R 5384672 5384693 CTTTGTGGAATACTTCAAGGAG 58 5384633 5384652 GATGATCACGAAATTGTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16736 FBgn0037668 FBtr0081985 2 1 1 60 3R 5082688 5082708 TAGCGATCTCATAACTATGGC 59 5082648 5082667 CACTGGTGTCATAATGACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Prosbeta3 FBgn0026380 FBtr0082010 1 1 1 108 3R 4831658 4831676 AAGAAGGTGTTCCACATCG 59 4831568 4831586 TCTCGTACAGATTCTTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31100 FBgn0051100 FBtr0082011 3 1 1 139 3R 4825366 4825775 TTGCTATTCGGATATGGCA 58 4825245 4825264 AGGTTAATGGAACTGAACCA 58 NA Drosophila melanogaster 50 CG11967 FBgn0037646 FBtr0081958 1 1 1 86 3R 4807813 4807831 TAATAGTTTGCGGACACAG 57 4807881 4807970 GTCGGTTAAGCTTAGAAGC 58 NA Drosophila melanogaster 50 CG34135 FBgn0083971 FBtr0110905,FBtr0110904 1 2 2 60 3R 4576502 4576520 GTGATGTATTTACTGGCGG 58 4576394 4576415 GCTTGAAGTGAATGATCATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11760 FBgn0037615 FBtr0081907 1 1 2 62 3R 4545212 4545230 GACATACTCTAGCCCTGGA 59 4545256 4545274 ATCGGATCGTCTCAAAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9773 FBgn0037609 FBtr0081953 1 1 1 141 3R 4501233 4501307 CTGGGATACAATTGCATTCC 58 4501111 4501132 CGCGATACTTGTAGAAATTGAC 59 NA Drosophila melanogaster 50 Obp85a FBgn0037589 FBtr0081849 1 1 1 232 3R 4246001 4246019 GGAAATTCAACTTTGCCGA 58 4245730 4245748 GAGAGTGAATCGTCTTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 grn FBgn0001138 FBtr0081808 3 1 1 222 3R 3993196 3993214 CTCTACCTCACTAACGGAC 58 3986730 3986748 TTTGTAGTACAGGCCACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14463 FBgn0037535 FBtr0081783 2 1 1 119 3R 3826194 3826212 AGGACATAGTGCTAAACGA 57 3826375 3826455 GGGATTGACTATTGAATAGGG 57 NA Drosophila melanogaster 50 CG1939 FBgn0037469 FBtr0081638 3 1 1 61 3R 2908467 2908486 CAAGATCGTCTGTGTAACCT 59 2908581 2908599 CATTGCGGGCTATTAATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31367 FBgn0051367 FBtr0081736 2 1 1 83 3R 2187747 2187767 CATCTCAAAGAGATTCAGGAC 58 2187591 2187609 AATAGTGTTCCTCTCCTCC 57 NA DesignNoJunction Drosophila melanogaster 50 Rm62 FBgn0003261 FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653 1 6 6 154 3R 1829622 1829746 GAGGAGAAATTGAAGACCCT 59 1829487 1829505 TTGTCACCGTGAATAGCTC 59 NA Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078675,FBtr0078672 1 2 5 165 3R 1586675 1587377 ATTCGGACATCAAATCGTG 58 1586472 1586490 GATGACATCTACCTTGCAG 57 NA Drosophila melanogaster 50 CG12746 FBgn0037341 FBtr0078690,FBtr0078692,FBtr0078689,FBtr0078691 3 4 4 80 3R 1392052 1392070 AAACTCTAATGCGAAGCTC 57 1392114 1392200 GTCTCCAACTTGAAGAAGG 57 NA Drosophila melanogaster 50 CG12746 FBgn0037341 FBtr0078690,FBtr0078692,FBtr0078689,FBtr0078691 2 4 4 80 3R 1392051 1392070 GAAACTCTAATGCGAAGCTC 59 1392113 1392199 TCTCCAACTTGAAGAAGGT 58 NA Drosophila melanogaster 50 Pi4KIIalpha FBgn0037339 FBtr0078756,FBtr0078757 2 2 3 187 3R 1388607 1388695 AAAGTTGAGATCAACACCG 57 1388438 1388456 TTCTGAATAACAGCATCGC 58 NA Drosophila melanogaster 50 CG2519 FBgn0037336 FBtr0078761,FBtr0078762 1 2 2 80 3R 1369138 1369157 TCACGTCTAATCGAGTTGTG 59 1369007 1369096 TCCAATAAAGCCCGTATCTG 59 NA Drosophila melanogaster 50 CG14668 FBgn0037320 FBtr0078801 3 1 1 64 3R 1212581 1212599 AAACCGATTAGTGTCGGTC 59 1212535 1212553 AAACGTCAGAAGAACTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hph FBgn0086689 FBtr0078782,FBtr0078781,FBtr0078780 2 3 3 112 3R 1092742 1092850 TCTGACCAATCAGATTGACTC 59 1092985 1093003 GATAACAAGCGACCATTGC 59 NA Drosophila melanogaster 50 CG9780 FBgn0037230 FBtr0078959,FBtr0078960 1 2 2 60 3R 118913 118932 GATCGATGAGATCTCTAGGC 58 118872 118892 CGTAGTGTGCATTATGTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpx FBgn0041605 FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897 2 5 15 193 3R 110111 120843 AATTAAGTGCCGTTAAAGGC 59 120999 121298 GATGTTGTACTTATCGCGA 57 NA DesignRelaxed Drosophila melanogaster 50 CG12582 FBgn0037215 FBtr0111225,FBtr0078964 1 2 2 100 3R 24403 24421 GTCAATGGTTCGTACTGGA 59 24483 24560 AATAGCTCGACAGCATATAGG 59 NA Drosophila melanogaster 50 CG40294 FBgn0058294 FBtr0111150 3 1 1 73 3L 23573503 23573521 TTTCACAGTAAGGAGAGCA 58 23573448 23573467 AAATCTTCTGACGGTTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SPoCk FBgn0052451 FBtr0078532 2 1 4 166 3L 22768457 22770214 TTCATTGAGGAACAGACGG 59 22770344 22770362 TTATGCCCGATGATCTTGG 59 NA Drosophila melanogaster 50 CG11437 FBgn0037165 FBtr0078505 3 1 1 63 3L 22462717 22462735 CACTTAACAGATGTGGCAG 58 22462762 22462780 ATACTGTTGCAAAGAAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eg FBgn0000560 FBtr0078437,FBtr0078438 2 2 2 98 3L 21807935 21807953 ATTTACATGTGAAGGCTGC 58 21809436 21809454 TTGTTGATCACGCAATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10586 FBgn0037036 FBtr0078335 1 1 1 60 3L 20948990 20949008 ATTGTGTCCTTTGGGATCG 59 20948948 20948967 GAACATCCGTATAGACACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Six4 FBgn0027364 FBtr0078274,FBtr0078275 2 2 2 127 3L 20783262 20783280 GTTCAAGAATCGTCGACAG 58 20782189 20782207 CGGGATAATAGCTTGGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17147 FBgn0036954 FBtr0074824 2 1 1 61 3L 20217879 20217898 ACTATGAGTGTGACAAGACC 59 20217922 20217940 CTTCTTGGAGGTGACAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fat2 FBgn0036930 FBtr0074906,FBtr0100509 1 2 2 80 3L 20008038 20008056 CGCTATTGAACTGTTACGA 57 20008099 20008174 TTTCCCATATCACTAACCGT 58 NA Drosophila melanogaster 50 Paps FBgn0020389 FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885 1 6 6 93 3L 19853427 19853509 TAGACAGCATGGAGATCCT 59 19853566 19853584 AACTCATCCTTCCTCTTGG 58 NA Drosophila melanogaster 50 pip FBgn0003089 FBtr0075007 1 1 11 126 3L 19300103 19300121 CACAAATGTGACATTGGCC 59 19299933 19299951 ATCCAGATGAGTGTCATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9629 FBgn0036857 FBtr0075017 3 1 1 61 3L 19260249 19260267 TGTGTACATCCTCAAAGCC 59 19260206 19260224 GTTCCACCTCATTGTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nes FBgn0026630 FBtr0075021,FBtr0075020,FBtr0075019 3 3 3 87 3L 19251647 19251665 ATACATGGTTGTGAGCACC 59 19251405 19251423 CGAGTTGTTCAGAATGTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG18135 FBgn0036837 FBtr0075044,FBtr0075043,FBtr0075042,FBtr0075045 3 4 4 61 3L 18984759 18984777 CAGACATGATCGAGTTGGA 59 18984716 18984734 ATCGTGATAAATCACAGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6843 FBgn0036827 FBtr0075067 1 1 1 64 3L 18895059 18895077 AATTTGCACGAGAACAAGG 58 18895105 18895123 ATGAAATTGACGCTCAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7320 FBgn0036782 FBtr0075128 1 1 1 60 3L 18196236 18196256 CGTTCCTGACTGTGATATACC 59 18196277 18196296 TTAAACTCCTTCGATTCCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14353 FBgn0036771 FBtr0075144 3 1 1 60 3L 17902345 17902364 GAGGGTCATTGATGACTCTG 59 17902387 17902405 AAGCATATTAAGGGCTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6333 FBgn0036731 FBtr0075224 1 1 1 60 3L 17473855 17473873 GACTCAGAAGATGTCCTCC 58 17473813 17473831 ACCGACAGTTTGTAGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3764 FBgn0036684 FBtr0075297 2 1 1 80 3L 16988830 16988848 ATGTCTCAGCTAGTGTCCA 59 16988707 16988786 CGACAAACACTCATAGGCT 59 NA Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 1 8 8 118 3L 16956803 16956821 AAGACCCATTGAAGGTAGC 59 16956901 16956979 CAATAGACCCTTGTGAATCAC 58 NA Drosophila melanogaster 50 Lmpt FBgn0036672 FBtr0089452,FBtr0089457,FBtr0089456,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459,FBtr0089455 1 8 8 80 3L 16914082 16914100 GGAGCAGGAGATCTATTGC 59 16914143 16914290 GAGGTGATGACCTTATTGCA 59 NA Drosophila melanogaster 50 CG13032 FBgn0036652 FBtr0075316 3 1 1 102 3L 16669016 16669034 CACAAATACGCTGAATTCG 57 16669158 16669176 CTTCTCTGTCAGCATTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4098 FBgn0036648 FBtr0075361 1 1 1 87 3L 16602284 16602302 GAGTTTCGAGTTTGCACTG 59 16602215 16602233 CAGCGATGACATCATTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tra FBgn0003741 FBtr0075364,FBtr0100244 2 2 2 137 3L 16583384 16583459 ATTTCTACGGGATGTCTGG 58 16583265 16583283 CGTTTCTGTAGCCAAATCG 59 NA Drosophila melanogaster 50 pHCl FBgn0036542 FBtr0100037,FBtr0100036 1 2 4 84 3L 15853122 15857082 CTAGATCGATGATAGGCGTG 59 15853057 15853075 TTAGAAACAACCGGCAGAG 59 NA Drosophila melanogaster 50 CG7372 FBgn0036522 FBtr0075570 2 1 1 60 3L 15614490 15614509 TAATACAGAATCCGTGGCTC 59 15614531 15614550 TTCATCGATTGTCAACTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12304 FBgn0036515 FBtr0075565,FBtr0075566 1 2 2 127 3L 15577530 15577748 ATTAAAGGAGGTGCCACTG 59 15577839 15577857 AGTGCGTAAAGGTCTTGAC 59 NA Drosophila melanogaster 50 gnu FBgn0001120 FBtr0075697 1 1 1 60 3L 14795841 14795860 AAGATTAAAGTGGAGGACCC 59 14795800 14795819 GCTTATAGCGTGAATGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7768 FBgn0036415 FBtr0075736,FBtr0075737 3 2 2 60 3L 14211495 14211514 CGCGTTTACTTCGATATAGC 58 14211534 14211555 GTAGTTCCATCACAATTCTACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34017 FBgn0054017 FBtr0100072 3 1 1 60 3L 12815436 12815456 TCATCCGACTATGATTTGACC 59 12815476 12815496 CTCCTTCCGAATCATATTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32103 FBgn0052103 FBtr0075983,FBtr0075982,FBtr0075984 2 3 3 147 3L 12398217 12398235 ACGTACCTGATGACTTCAC 59 12398023 12398106 CTTTGTGTTTGTACCTGCA 58 NA Drosophila melanogaster 50 CG32100 FBgn0052100 FBtr0076006 2 1 1 60 3L 12261192 12261210 CACTAGATGACCACGAGAC 59 12261234 12261252 TCGAGATACGATACTTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6910 FBgn0036262 FBtr0076002 2 1 1 227 3L 12179993 12180011 CATCTATCAGCCCAATTGC 58 12180201 12180281 TCATAGCGATTGAAGATCAG 57 NA DesignRelaxed Drosophila melanogaster 50 CG11658 FBgn0036196 FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127 1 5 5 86 3L 11694639 11694657 AACAAGGGTATTGCCAGTC 59 11694509 11694589 GCTGTCATTTACATGCGAG 59 NA Drosophila melanogaster 50 CG11658 FBgn0036196 FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127 3 5 5 186 3L 11694739 11694757 TAATGGTCTCAGTGAGGCT 59 11694509 11694589 GCTGTCATTTACATGCGAG 59 NA Drosophila melanogaster 50 Sgs3 FBgn0003373 FBtr0076096 1 1 1 125 3L 11505497 11505515 AACTACAACTACTTGTGCG 57 11505604 11505622 TTAGATGTCGTGCATGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sgs8 FBgn0003378 FBtr0076160 2 1 1 77 3L 11502214 11502235 ATCTGATCAACATTATGGAGGG 59 11502158 11502176 TCTAGAACAGCCAAACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12289 FBgn0036160 FBtr0076178,FBtr0076179 1 2 2 60 3L 11451067 11451085 CCACAATTGTCCAAGATCG 58 11451025 11451044 AATGACTTGTCGCAATACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NijA FBgn0036101 FBtr0089569,FBtr0089570,FBtr0089571 2 3 3 149 3L 10687816 10688132 ATATTCCAGATTGCTGTGGG 59 10687686 10687707 GGCTGATATTAGAACATTGACC 58 NA Drosophila melanogaster 50 Ilp3 FBgn0044050 FBtr0076373 3 1 1 60 3L 9794874 9794892 CTTCAATCAGATCGATGGC 58 9794832 9794853 ACTATCACTCAACAGTCTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323 3 4 11 114 3L 9774996 9775719 ACCTGGGTAATTTGTCTGG 59 9775795 9775815 TACATATCGTCCTTCATGTCG 59 NA Drosophila melanogaster 50 Hsp22 FBgn0001223 FBtr0100558 2 1 2 62 3L 9366372 9366390 AATCGAGTCTTGGAAGCAG 59 9366416 9366502 GTAGATCACCACATTGCTG 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG4476 FBgn0035969 FBtr0076429 1 1 1 60 3L 9207843 9207861 GGTCAGGAATTTCCATTGG 58 9207948 9207968 CAATAATACAGCCCGATACAC 58 NA DesignNoJunction Drosophila melanogaster 50 Tequila FBgn0023479 FBtr0076526,FBtr0076525,FBtr0076528 1 3 4 100 3L 9082961 9082979 AAAGATGAGGCTAACTGCC 59 9083042 9083131 CATTGACCATTAGCCTTGAC 58 NA Drosophila melanogaster 50 Argk FBgn0000116 FBtr0112791 1 1 6 107 3L 9043448 9057571 GAAATACGCAAACAAGACAC 57 9043360 9043378 GTACTTCTTCAACAGCGAC 58 NA Nonspecific Drosophila melanogaster 50 Doc2 FBgn0035956 FBtr0076547,FBtr0100367 1 2 2 63 3L 9007823 9007841 GTTGACCAATAACACGCTG 59 9007700 9007718 CTGATACTTGTGCATGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13310 FBgn0035928 FBtr0076590 3 1 1 123 3L 8792967 8792985 ATGTTCTCGATAGCTCCTC 58 8792659 8792881 CAATGTACATGTGATCTCCC 58 NA Drosophila melanogaster 50 CG32022 FBgn0052022 FBtr0076597 1 1 1 60 3L 8713834 8713852 CGTAAAGTATCAGAGGCGG 59 8713792 8713810 GCATGAAGTTCTCCATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13670 FBgn0035873 FBtr0076708 1 1 1 61 3L 8314921 8314939 GTGTGGTTAAATACACGGC 59 8314964 8314982 ACCATTGGTAATGACCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mthl7 FBgn0035847 FBtr0076726,FBtr0076727 3 2 2 109 3L 8172115 8172135 CTGACAGCCATTTACATTAGG 58 8171963 8172044 AACTGTAGGTAAGTCTGGC 58 NA Drosophila melanogaster 50 CG7409 FBgn0035817 FBtr0076810 3 1 1 60 3L 7747733 7747751 GGAAGCGATCACTATCTCG 59 7747775 7747793 TTTCCGACAATTACCCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bj1 FBgn0002638 FBtr0077076,FBtr0077075,FBtr0077074 1 3 3 196 3L 5924798 5924816 ATTTGGTCATCCTGACCAC 59 5924561 5924579 GAATGTGCAGTAGTTGGTG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Tektin-C FBgn0035638 FBtr0077115,FBtr0113147 3 2 2 106 3L 5788690 5788708 GAAGCTCAAGGAGTTCCAG 59 5788197 5788215 CCAGATTCTCGTACGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Msr-110 FBgn0015766 FBtr0077133,FBtr0077132,FBtr0077131 3 3 3 231 3L 5561016 5561034 CATTCAGCGTTTGATCCTG 59 5560675 5560694 TGTTACTTAAACGGAACGAG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Dhc64C FBgn0010349 FBtr0073360 1 1 2 98 3L 4813392 4813410 AACCGTCAAGATCGAAGAG 59 4813074 4813330 TTAATCGAGCTAACGGCTG 59 NA Drosophila melanogaster 50 CG32245 FBgn0052245 FBtr0073311 2 1 3 80 3L 4564538 4577926 TACGTAGACTTGATACACAAGC 59 4578774 4578792 ATGTTGATGCCTTATCGCT 59 NA Drosophila melanogaster 50 CG32242 FBgn0052242 FBtr0073326 2 1 1 75 3L 4503563 4503581 ATAGTGAACACTGGTCAGC 59 4503439 4503457 AGTAGGAACAACTCTCGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11345 FBgn0035546 FBtr0073334 3 1 1 64 3L 4457732 4457750 TGATTAAGGTCAACCCACC 59 4457686 4457704 ATTGACCTTGACAACTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14997 FBgn0035515 FBtr0073226,FBtr0073225 1 2 2 84 3L 4241426 4241503 CTTTAGGAAGATGGGTCGTC 59 4241550 4241568 TGCGTAATGCTTAACACCA 59 NA Drosophila melanogaster 50 Chd64 FBgn0035499 FBtr0073270 3 1 1 203 3L 4115429 4115447 AGTGCATGGAGAACATCTC 59 4115082 4115101 AGTTCCTCACATTCTTGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12006 FBgn0035464 FBtr0073150,FBtr0073149 3 2 2 84 3L 3812980 3812998 GAATACAGAGATGAACGCG 58 3813043 3813127 GGTGAATGTGACTATAGTATGG 57 NA Drosophila melanogaster 50 CG32284 FBgn0052284 FBtr0073037 3 1 1 84 3L 3186885 3186967 TCCAACTTGTAGAACCTACG 59 3187014 3187032 GTACTGGTTCACTTTGCAG 58 NA Drosophila melanogaster 50 CG12734 FBgn0035411 FBtr0073036 1 1 2 157 3L 3183716 3183734 TAATAGCAATGAGGAGCCA 58 3183988 3184260 GCTTCAAGAGTTTCTGAGC 58 NA Drosophila melanogaster 50 CG14955 FBgn0035399 FBtr0073123,FBtr0073122 2 2 2 83 3L 3113326 3113344 GAGTGCCAAGATTTCTACC 57 3113163 3113282 GCTGTCTATTACTTCACTATCG 58 NA Drosophila melanogaster 50 CG33234 FBgn0053234 FBtr0113457 3 1 2 133 3L 2662835 2662999 ATATGGATGCTGAGATGCC 59 2663094 2663114 CCTATAATTACCCAACGACGA 59 NA Drosophila melanogaster 50 CG7995 FBgn0035266 FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767 3 5 5 158 3L 1743700 1743718 CCATCTCCACGTACTTCTC 59 1743909 1743927 TTACATCCGTGATGTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7971 FBgn0035253 FBtr0113123,FBtr0072807,FBtr0072806,FBtr0100219 2 4 5 179 3L 1661261 1661279 GATCATGTCTCCAAGACGG 59 1659864 1659882 CTTTCGGACATTCTTCGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Psa FBgn0035226 FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697 3 6 6 120 3L 1520660 1520678 CTACCGTGAGACCTTTGTG 59 1520761 1521150 CATAGTTACCAGATTGCCGA 59 NA Drosophila melanogaster 50 Ptp61F FBgn0003138 FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718 1 4 4 143 3L 1346059 1346077 GAAACAGATCAAGTGCCAC 59 1345856 1345953 TCGGTTAATTTGAACCATCG 58 NA Drosophila melanogaster 50 CG9184 FBgn0035208 FBtr0072726 3 1 2 184 3L 1322443 1322551 GAAGACCATTGAGGATCAG 57 1322277 1322295 TGTAGCCATTGTAGTAGGG 58 NA Drosophila melanogaster 50 CG12038 FBgn0035179 FBtr0072619,FBtr0072620 3 2 2 170 3L 994902 994980 CATAATGCAGTATCTGGCCT 59 995113 995131 GCACTCTGGTACTTCAGTC 59 NA Drosophila melanogaster 50 Kaz1-ORFB FBgn0063923 FBtr0100851 3 1 6 186 3L 216933 216952 ACTACATCCACTTGTATCGT 58 217100 217229 TACACGCATTATGTTCAGGA 59 NA InUTR Drosophila melanogaster 50 CR41440 FBgn0084049 FBtr0111304 2 1 1 85 2R 619123 619141 AGAAGTGCTTCTTTCTGAC 57 619190 619208 GATGAACTCCTTCTCTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR30449 FBgn0050449 FBtr0086333 3 1 1 61 2R 15616792 15616811 TATTGTCTAGTGGTTAGGCT 57 15616835 15616853 ATACAGGGAACTGAACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13588 FBgn0035038 FBtr0072319 1 1 1 125 2R 20496803 20496882 ACAACCCGAATAAGAATGAC 57 20496968 20496988 CGTCATCTAGAATGCTAATGG 58 NA Drosophila melanogaster 50 CG4681 FBgn0069913 FBtr0072341 2 1 1 74 2R 20466831 20466849 CGATATGAGTCTGCTGACC 59 20466775 20466793 AATTTGGAAAGATTGCGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ori FBgn0035025 FBtr0072308 1 1 1 80 2R 20454948 20455019 GATCCCAGAAGTCAGTTCTC 59 20455061 20455080 ATTACTGGTCGGAGTTATGG 58 NA Drosophila melanogaster 50 CG3394 FBgn0034999 FBtr0072268,FBtr0072269 1 2 2 246 2R 20184732 20184750 ACGTCTTCTTTAACTCGGG 59 20185258 20185276 TAATCCATGTCCACCTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3363 FBgn0034987 FBtr0072260 1 1 1 132 2R 20078139 20078157 AAGGACACGGATAAGTCAG 58 20078253 20078331 AAGGTTTGTTAGCATCTGC 58 NA Drosophila melanogaster 50 Unc-89 FBgn0053519 FBtr0091464,FBtr0113464 1 2 2 80 2R 19885415 19885497 GAGAGTCATTACCAATACGGA 59 19885355 19885373 ATACTCTCGCAATCTCACC 58 NA Drosophila melanogaster 50 wibg FBgn0034918 FBtr0072233 3 1 1 223 2R 19744002 19744023 ACATCAACTCGATATCCAAGAC 59 19743800 19743818 CTCCAAGTCCTTGATCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13545 FBgn0034828 FBtr0071972 2 1 1 256 2R 19045543 19045618 AGCTTTGGCCCTATTAATCC 59 19045306 19045324 TAGGATGAGGAGTAGACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11206 FBgn0034720 FBtr0071846,FBtr0113106,FBtr0071847 3 3 4 146 2R 18222380 18222458 GAAAGGATCTCAGAGCTCC 59 18222252 18222271 ATGGTTGCGTATATTCCTCC 59 NA Drosophila melanogaster 50 Vrp1 FBgn0034695 FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104 3 7 7 89 2R 17998431 17998841 CAACCTAAATATCTCGTTAGGC 58 17998363 17998383 GTTAGACTGCTGTTTAAGGAC 58 NA Drosophila melanogaster 50 CG9304 FBgn0034674 FBtr0071726 1 1 1 105 2R 17862241 17862312 TACATCTGGGATAGGACGG 59 17862444 17862463 ACCACATCATAAAGGAGGTG 59 NA Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708 1 9 9 89 2R 17398741 17398920 CCAGAGGATTACGTCTATCC 58 17398972 17398990 ACCAATCACCGACTTTAGG 59 NA Drosophila melanogaster 50 CG4050 FBgn0020312 FBtr0071637,FBtr0071638 1 2 2 60 2R 17012577 17012595 TATCAGCATGAGGAGTGAC 58 17012475 17012493 CTTCATAAGAATGTCGCCA 57 NA DesignNoJunction Drosophila melanogaster 50 CG9346 FBgn0034572 FBtr0071526 1 1 1 80 2R 16900820 16900841 AGAGGACAAAGAGAATATGGAG 59 16900942 16901029 TTAAGAACAGCCTTCTCTGTG 59 NA Drosophila melanogaster 50 insc FBgn0011674 FBtr0071562 3 1 1 96 2R 16710766 16710784 CCACTACTCCATCATGTCC 59 16710259 16710708 GATTTGCTCGTAGAGAAAGAC 58 NA Drosophila melanogaster 50 insc FBgn0011674 FBtr0071562 1 1 1 92 2R 16710762 16710780 TACTCCATCATGTCCAACG 59 16710259 16710708 GATTTGCTCGTAGAGAAAGAC 58 NA Drosophila melanogaster 50 CG10444 FBgn0034494 FBtr0086305 2 1 1 60 2R 16160167 16160187 CGACTACTTCTGGTTATATCG 57 16160127 16160145 AATAAGAAAGCCGATGACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 plu FBgn0003114 FBtr0086306 3 1 1 151 2R 16150788 16150806 AATCTGTCCTCGATGATCC 58 16150601 16150619 TTAATCATTCCTCGCAGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG15120 FBgn0034454 FBtr0086463 1 1 1 65 2R 15387273 15387291 GCAATTAATATTGCCGCTG 57 15387430 15387448 AATGTCGTGCACATTACCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG15093 FBgn0034390 FBtr0086640,FBtr0086639 3 2 3 72 2R 14664066 14664084 CAAGAACTCGGACTTTGTG 58 14664012 14664030 AGTCATCTCATCGTAGGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5174 FBgn0034345 FBtr0086684,FBtr0086689 2 2 7 99 2R 14312452 14312470 CATTTCGTCGAAACTGTCG 59 14312533 14313480 GGAACTCAACGCTTTAACG 59 NA Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 1 8 8 97 2R 14032395 14032483 AGGAAAGAATTCTGAGAAGC 57 14032543 14032561 CAATCATCGGATACAGACG 57 NA Drosophila melanogaster 50 Hsf FBgn0001222 FBtr0110964,FBtr0086782 2 2 4 81 2R 14018836 14018854 AGTTGGAAACACTGAAGGA 58 14018537 14018791 GAGTCGTTAAACAGACCCA 59 NA Drosophila melanogaster 50 CG14487 FBgn0034272 FBtr0086865 1 1 1 60 2R 13632113 13632132 TCAACCATATTCGACAAGGA 58 13632155 13632173 CGGGCATAACAGTAAGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9001 FBgn0034175 FBtr0087060 3 1 1 60 2R 12887578 12887596 ACATTTCTGGGATGATCCA 58 12887536 12887554 GTCCAGAACCAAGAAAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hmgs FBgn0010611 FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146 1 5 5 60 2R 12227687 12227705 CAGCAGAAGGATACTTCCA 58 12227727 12227747 GGAATAGGATAGCATCGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33017 FBgn0053017 FBtr0087135 3 1 1 60 2R 12163545 12163565 CAGGAACGCTAATCATAACAG 58 12163586 12163605 GTCGCAAATACAATCATCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rho1 FBgn0014020 FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216 3 7 7 83 2R 11993292 11993372 ACACAATTCGGGATCTAGC 59 11993419 11993437 AGGCATTAATCTTCTCGGC 59 NA Drosophila melanogaster 50 ATPCL FBgn0020236 FBtr0087266,FBtr0087265 3 2 2 85 2R 11881893 11881976 CATTTACCAGTGAGGAAGC 58 11881826 11881844 AATAAATCCTATGCTGCGG 57 NA Drosophila melanogaster 50 l(2)k05713 FBgn0022160 FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309 1 4 4 83 2R 11747749 11747767 GAACTTCCTCGAGATCCAC 59 11747609 11747702 ACTGCTCTAGATCTAGGCC 59 NA Drosophila melanogaster 50 CG30088 FBgn0050088 FBtr0087280 3 1 1 60 2R 11579170 11579188 CTGGCCAATGATATTGCTC 58 11579211 11579291 GTATGTGCACATTAAAGCGA 58 NA DesignRelaxed Drosophila melanogaster 50 CG33467 FBgn0053467 FBtr0089861 1 1 1 145 2R 10943596 10943614 ATTTACCAAGGTCGAGTGC 59 10943413 10943487 CTTGCACTCGAATTGTTGG 59 NA Drosophila melanogaster 50 shot FBgn0013733 FBtr0087619,FBtr0087617,FBtr0087616,FBtr0087618 1 4 6 80 2R 9804409 9804427 GAGGATATTGTGGATGGCA 59 9792995 9804367 AATATCGGAGATCTGGAAGTG 59 NA Drosophila melanogaster 50 CG4716 FBgn0033820 FBtr0087747,FBtr0087746 3 2 2 61 2R 9144352 9144373 CCATATTATCAAACGATCTGCC 59 9144393 9144413 CTTTGTCATTATGCTCCTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AQP FBgn0033807 FBtr0087766 3 1 1 295 2R 9100790 9100808 CTTCAAGGAGATGGCTCTG 59 9100453 9100531 AGTTAAAGGCGTAAACTGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG30486 FBgn0050486 FBtr0087817 1 1 1 163 2R 8735945 8735963 TGGATGATGTTAAGGGCTG 59 8735749 8735767 GTACTGATAGAGTCCGCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087832,FBtr0087836 1 2 8 102 2R 8505631 8505712 TTCCTGAATACGATGGTCC 58 8505778 8505796 GAATAGCATTGACGTTCGG 58 NA Drosophila melanogaster 50 Sin3A FBgn0022764 FBtr0087887,FBtr0087889,FBtr0087890,FBtr0087888 2 4 4 91 2R 8467292 8467310 CAACATGGACTCGAATACG 58 8467117 8467237 TGGAGACAACCTTATCCAG 58 NA Drosophila melanogaster 50 vis FBgn0033748 FBtr0087944 1 1 2 137 2R 8396496 8397090 CAGTGTCATCTACAGGTCC 59 8396318 8396336 TCCTCAGTCCCAAATACAG 58 NA Nonspecific Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930 3 5 6 106 2R 8335508 8335527 TATCATAACCTCAACAAGCG 57 8335595 8335676 GAGTTATCACTTGTGTACGC 58 NA Drosophila melanogaster 50 Cyp6g2 FBgn0033696 FBtr0088009 3 1 1 60 2R 8077496 8077517 ATCCCAGAACATATTCTTCCTG 59 8077457 8077475 CGATAGCTTCAAACGTACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ix FBgn0001276 FBtr0088154 2 1 1 60 2R 7247102 7247120 CACTTACTTGAACACGGTC 58 7247060 7247079 CAGAGTGTCGTGTATATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7220 FBgn0033544 FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217 3 5 5 110 2R 6624695 6624713 CCATGTTGAGTAGTTGTCG 58 6624787 6624870 CAGAATCATCGTGGTACCA 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0089342,FBtr0089349 2 2 26 187 2R 6419759 6419778 TTGAGGATTTGACACTGGAC 59 6408769 6419548 GTCGTACTTCAGGTCTTGG 59 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 2 9 9 198 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349188 6349206 CTTAGTACAGTCCACAGCC 59 NA Drosophila melanogaster 50 Pka-R2 FBgn0022382 FBtr0088438,FBtr0088437,FBtr0088439 3 3 5 219 2R 5885777 5885795 CGAACGCATCATCAAACAG 59 5884113 5885213 CTTGACATCGAGGAATGCT 59 NA DesignRelaxed Drosophila melanogaster 50 Prosalpha7 FBgn0023175 FBtr0089997,FBtr0089998 2 2 2 80 2R 5734626 5734644 AGACTGAGATGGAGAAGCT 59 5734397 5734585 GGACTTTGTAGATGATTTCACC 59 NA Drosophila melanogaster 50 CG1623 FBgn0033448 FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487 2 4 4 70 2R 5716116 5716134 TGAACTACGAACCCAAGAC 59 5716064 5716082 ATCCGGATACTTGTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Wnt2 FBgn0004360 FBtr0088512 2 1 1 281 2R 5389081 5389483 GTCATACCCACAGCTTCTC 59 5389726 5389746 GTTATTGTGCAGGTTCATCAG 59 NA DesignRelaxed Drosophila melanogaster 50 Pkn FBgn0020621 FBtr0112897,FBtr0088602,FBtr0088604 1 3 6 98 2R 5144983 5145002 GTATCTGTATCGTGGTAGCA 58 5143204 5144922 TGTGGTATAACCTCCACAC 58 NA Drosophila melanogaster 50 gcl FBgn0005695 FBtr0088710 2 1 1 92 2R 4615200 4615218 ATTATACCCAAGGAGTGGC 58 4615274 4615362 CTGAGGACTACAATCCTCC 58 NA Drosophila melanogaster 50 CG34218 FBgn0085247 FBtr0112411 2 1 1 73 2R 4250072 4250090 TAGTCTGCCTAAGAAGTCG 58 4250017 4250038 GTTAATAGCAGTCTCGATACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pnut FBgn0013726 FBtr0088793,FBtr0088792 1 2 2 60 2R 4126449 4126470 GGTGCATCTATTTAAGAAGCAG 59 4126489 4126509 GTAGATCTTGATCTTGTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8709 FBgn0033269 FBtr0088815 2 1 2 200 2R 4026691 4026709 TTAAGATCGCCTGTCTGTC 59 4026084 4026447 GATTGATGTAGCCAGAGGA 58 NA Drosophila melanogaster 50 CG12821 FBgn0040780 FBtr0113332,FBtr0113331 1 2 2 83 2R 3721687 3721705 TAGTGTGGAGTACCATGTG 58 3721751 3721827 AGACTTCCATCTGATCTGTG 58 NA Drosophila melanogaster 50 CG1399 FBgn0033212 FBtr0088940,FBtr0088939 3 2 2 123 2R 3565905 3566090 GGTCTAAACAGAATGGAACTC 58 3565802 3565822 AGCTGACTGATACACTATTGG 59 NA Drosophila melanogaster 50 dpld FBgn0015930 FBtr0088985,FBtr0088987,FBtr0088986 2 3 3 142 2R 3371482 3371500 TAGTGTTCGACAACCATGG 59 3371296 3371378 GGAAAGAATGTCGTTGATGTC 59 NA Drosophila melanogaster 50 CG1707 FBgn0033162 FBtr0089013 1 1 1 142 2R 3283096 3283114 TTCTCGCTGTACTTTCTGG 59 3281431 3281449 TAATTCTGATCCGGATCCC 58 NA DesignNoJunction Drosophila melanogaster 50 cos FBgn0000352 FBtr0089015 1 1 1 85 2R 3273115 3273133 AACTTTGGCCTACAATTCG 58 3272992 3273066 TTGGAGTCTATCAGCTTGG 58 NA Drosophila melanogaster 50 Tsp42El FBgn0033134 FBtr0089032 2 1 1 111 2R 2935583 2935601 CTGAATCTATATGTGCGCG 58 2935676 2935758 GAATGACAGCGTTGAATCC 59 NA Drosophila melanogaster 50 CG7849 FBgn0033060 FBtr0085977,FBtr0085976 1 2 2 60 2R 1965401 1965421 GATGTGACAGATAGTCTGCTC 59 1965441 1965461 GGAGGTTCTTGATAATTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)09851 FBgn0022288 FBtr0086043 2 1 1 60 2R 1642399 1642418 GATGACGGCTTATATTGTGG 58 1642440 1642459 AATAAGGTTGTTGACATGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17510 FBgn0039969 FBtr0086073,FBtr0086074 1 2 2 99 2R 1491755 1491773 AAATGATCAAGTTCGCTCC 58 1491443 1491461 AAGTACTAAAGCTGCTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10395 FBgn0033019 FBtr0086087,FBtr0086088 1 2 2 60 2R 1238958 1238976 AGTCTTTACAACAGCCCTC 59 1239000 1239018 TAGTTGCCAGTTACAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Atf6 FBgn0033010 FBtr0086081,FBtr0086080,FBtr0086079 2 3 3 60 2R 1040784 1040805 ACTCATATAATGAACCTCCACC 59 1040823 1040844 CACCTGTTTATACAGTTTCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-2263 FBgn0082990 FBtr0113537 3 1 1 61 2L 5187846 5187864 AACGATTATTGGATGCTGG 57 5187888 5187907 TATGGAGTGATGCGATTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17494 FBgn0040011 FBtr0111253,FBtr0111252 2 2 3 109 2L 22473765 22473783 GCATGATCACTGAAGACCA 59 22473854 22476862 CTTTACAATCTCGTTTCGCAG 59 NA Drosophila melanogaster 50 Tsp39D FBgn0032943 FBtr0081515 2 1 1 88 2L 21356673 21356795 GGGTATACAGGAGCTACGA 59 21356847 21356865 CTTGTGAAGCATGGTATGC 59 NA Drosophila melanogaster 50 crc FBgn0000370 FBtr0081512,FBtr0081513 1 2 3 83 2L 21318350 21318369 ATTCGATGCTTACAAACAGG 58 21318415 21318498 GGAGTATAGCATTGCACCT 59 NA Drosophila melanogaster 50 CG9249 FBgn0032922 FBtr0081500 2 1 1 153 2L 21158425 21158443 AATTCGACTAGAAGCAGCA 58 21158230 21158311 TGATAAAGGGAACCCTAATCTC 59 NA Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445 3 8 8 80 2L 20877196 20877215 TCTGCAAGAAGATACCAGTG 59 20877070 20877156 AAATATACTGGGTACTCAGTCC 58 NA Drosophila melanogaster 50 CG14402 FBgn0032894 FBtr0081425 1 1 1 60 2L 20849883 20849903 CTGTACCGGTAAATTGTACAG 58 20849925 20849943 GAAGAACTTACTCAGTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10195 FBgn0032787 FBtr0081286 1 1 1 122 2L 19483516 19483534 CGTATCAATCCCTGTTGGA 59 19483348 19483430 CATAGAAGTCATCGCCAGG 59 NA Drosophila melanogaster 50 dnt FBgn0024245 FBtr0081224 2 1 1 107 2L 19339846 19339864 CAAATTGTGATGATGGCCT 58 19339639 19339775 CTGATCGTCAATAACGCAG 58 NA Drosophila melanogaster 50 CG10176 FBgn0032682 FBtr0081067 3 1 1 60 2L 18486908 18486928 CACAATCACAGATCTACAGTG 58 18487031 18487050 GTTGTCATAGTCACAACGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CadN FBgn0015609 FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017 1 6 12 101 2L 17651479 17652674 TCTGATACTACTCGTCTTGGT 59 17651398 17651416 TTGATGATATTCTCGCGCA 59 NA Drosophila melanogaster 50 CG34170 FBgn0085199 FBtr0112361 1 1 1 61 2L 17311721 17311742 CGTTAAGGATAAGCTGAATCTG 58 17311681 17311699 ATCCATCCCGGTATACCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31818 FBgn0051818 FBtr0080841 2 1 1 60 2L 16338322 16338340 CCCAAAGTCTACTACGACC 59 16338280 16338301 ATCTTGGCTTAGGATTTAGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gli FBgn0001987 FBtr0080769,FBtr0080765,FBtr0080768,FBtr0080767 2 4 5 83 2L 15760332 15760410 GGATTACAGAACCTACACGT 59 15760268 15760286 TTTCTGCCTGGATAGTTGG 59 NA Drosophila melanogaster 50 yuri FBgn0045842 FBtr0080711,FBtr0100613,FBtr0080712 3 3 7 107 2L 15261795 15261813 ATCTACGACGAATCCTCGA 59 15261626 15261725 CGTATCGCATTCAATTTCCA 58 NA Nonspecific Drosophila melanogaster 50 elB FBgn0004858 FBtr0080637 3 1 3 221 2L 14391934 14392242 TATTATCCACCCGGTTACG 58 14391731 14391749 GTTTATGTAGTGCGGACTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG16863 FBgn0028931 FBtr0110942 1 1 2 124 2L 13791568 13791586 TTCATGCTGTACCATTTGC 58 13791743 13791761 CACAATCTGCAATGACTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15638 FBgn0028943 FBtr0080516 2 1 1 139 2L 13535729 13535747 GATTATAATCCACCGCCCA 59 13535608 13535626 CAATTGGAGGTTCCTTTGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090029 3 2 17 196 2L 12726933 12726951 TATATCAAGAGCGTTGGCA 58 12727110 12736605 ATATAGCTGAAGACTTGGCC 59 NA Drosophila melanogaster 50 PICK1 FBgn0032447 FBtr0080396,FBtr0080395 1 2 2 97 2L 12696297 12696316 CATTACAAAGGATCAGAGCA 57 12696376 12697481 GTGTTCCATCGAAGATCTG 57 NA Drosophila melanogaster 50 bun FBgn0010460 FBtr0111003 2 1 6 189 2L 12477159 12498535 GATTTCATCGGTGCATCTG 58 12458097 12458115 TGTTCGACTTGAGAATGCT 59 NA Drosophila melanogaster 50 CG31860 FBgn0051860 FBtr0080340 2 1 1 60 2L 12166227 12166245 CTCATGGTTCTGATGGAGG 59 12166269 12166287 ATGTCTGTTTCACCTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31760 FBgn0051760 FBtr0080338 3 1 1 96 2L 12167033 12167124 AGCAGAAGTGATCTTAGATCAG 59 12167181 12167199 CAGGAAGAACACTTCTCCG 59 NA Drosophila melanogaster 50 CG14914 FBgn0032334 FBtr0113036,FBtr0080192 1 2 2 109 2L 11068922 11068940 CAAGTGCAATCTATGGCAG 58 11069013 11069031 TTGATTGCTGTTTGACCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dnz1 FBgn0027453 FBtr0080181 3 1 1 110 2L 10855451 10855666 CCAGTTGCGAATGATTCAC 59 10855359 10855377 GTCTCGTCGTACAGAATCG 59 NA Drosophila melanogaster 50 Cdk5alpha FBgn0027491 FBtr0080063 2 1 1 61 2L 10308564 10308582 TTGGTTGAAGACTCGAAGG 59 10308449 10308469 CTTAGCTTGTTCACAATGACG 59 NA DesignNoJunction Drosophila melanogaster 50 Nckx30C FBgn0028704 FBtr0079926,FBtr0079928,FBtr0079927 1 3 3 118 2L 9733529 9742390 CAACGTGGTATCAATGACAC 59 9733430 9733448 ATGATGTGCAGGATGACAG 59 NA Drosophila melanogaster 50 Trx-2 FBgn0040070 FBtr0079839 1 1 2 100 2L 9613532 9615311 AAAGATAAGGCCGATCTCG 59 9615375 9615393 GAGATCATCTTGCAGGGTC 59 NA Drosophila melanogaster 50 Sema-1a FBgn0011259 FBtr0110930,FBtr0079691 3 2 3 96 2L 8660491 8660509 CCTCTGTAGTCATCGAGGA 59 8660568 8660660 TCTTTGGGTTGATCGTACTG 59 NA Drosophila melanogaster 50 lectin-29Ca FBgn0040098 FBtr0079715 3 1 1 60 2L 8394093 8394112 CTGGTTTACCTACAATTCGC 58 8394052 8394073 CTCCATATTACCAATTCTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Uro FBgn0003961 FBtr0079486 1 1 1 60 2L 7780868 7780888 CAGTATGATCGCATCTTTAGC 58 7780910 7780928 TCTCGGTATCGGAGTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31904 FBgn0051904 FBtr0079502,FBtr0079501 3 2 2 284 2L 7735484 7735566 ATTTAAAGGCATTGGCTACG 58 7735106 7735124 GTGTAGGACAGTCCATGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG5973 FBgn0031914 FBtr0079446,FBtr0079448,FBtr0079447 1 3 3 102 2L 7444552 7444571 TGAAAGCAGTTCACATAGTG 58 7444636 7444719 TGGAAGAAGATCCTCTTGC 58 NA Drosophila melanogaster 50 CG31909 FBgn0051909 FBtr0079406 1 1 1 91 2L 7257998 7258016 AGAAATCGTAGAGAACCCA 57 7258071 7258089 AAGCGTCTACTTCATCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nrv2 FBgn0015777 FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382 1 5 5 84 2L 6791573 6791591 TTTGATCTGGTACAAGGGC 59 6791313 6791525 TACTTTGTACACCGCAAGG 59 NA Drosophila melanogaster 50 CG34179 FBgn0085208 FBtr0112372 3 1 1 87 2L 6048627 6048647 CGAAATGTCGTACTTACTCAC 58 6048560 6048578 ATTGGTCAGGTGGAATGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12511 FBgn0031729 FBtr0079113 1 1 1 60 2L 5678959 5678977 CTCAAGACATTCTCACAGC 58 5679001 5679019 TTTCTCTGACCTCTAGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vri FBgn0016076 FBtr0079070,FBtr0079071 1 2 2 91 2L 5307901 5308027 AGGCTTCTAACTTGCATCC 59 5308082 5308100 ATATTTGCCCAGACTGTCG 59 NA Drosophila melanogaster 50 pgant5 FBgn0031681 FBtr0079026,FBtr0111024 3 2 2 114 2L 5077708 5077787 CTCAACTTCCGATGGTACC 59 5077612 5077632 CCTTATCGATGGAGAACAGAC 59 NA Drosophila melanogaster 50 betaggt-I FBgn0015000 FBtr0078991 2 1 1 102 2L 4945960 4945979 GCTCCGATTCCTTAATCTCC 59 4946101 4946119 TGAGTTTAGCACATCCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3008 FBgn0031643 FBtr0077389 3 1 1 128 2L 4884221 4884239 TGATAACAAAGCACGATCC 57 4884328 4884400 GGTTAAACACCTTATTGGAGAG 58 NA Drosophila melanogaster 50 bowl FBgn0004893 FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493 2 4 4 81 2L 3780517 3780537 GCCCTATTCCTGTGATATCTG 59 3780577 3781922 CTCCTTGGAGTGAATATACCTG 59 NA Drosophila melanogaster 50 dpp FBgn0000490 FBtr0077774,FBtr0077772,FBtr0077775,FBtr0077771,FBtr0077773 1 5 5 60 2L 2458369 2458387 GACCACTTTAACTCGACCA 59 2458410 2458429 CGGGATTCATATTGTTGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34447 FBgn0085476 FBtr0112751 1 1 1 103 2L 2419491 2419561 CTGTACTCGAATTCCACCC 59 2419406 2419427 CCATGGATGAGTATCTTTAGGG 59 NA Drosophila melanogaster 50 CG31670 FBgn0031375 FBtr0077870 3 1 1 113 2L 1951165 1951183 CACCTCACGATTATCCCAG 59 1951070 1951088 CTATGAAGGTCTCCGAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4749 FBgn0031308 FBtr0077959 1 1 1 60 2L 1147944 1147963 ACAAGAAGAACAACTGTGAC 58 1147985 1148004 TAGACACTTCCGTAGAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 drongo FBgn0020304 FBtr0078035,FBtr0078036,FBtr0078037 3 3 3 121 2L 836547 836565 TCCCATCTACAATGCAGTG 59 835446 835464 CGTCGAGATCCTTAAGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Pkg21D FBgn0000442 FBtr0078042 1 1 1 107 2L 788167 788249 GATTTCAGTGATAAGCAGCA 58 788079 788100 CTTGGAGTACATTGAATCTACC 58 NA Drosophila melanogaster 50 RpLP1 FBgn0002593 FBtr0078056 3 1 1 260 2L 420301 420319 ATCAACACCATCCTGAAGG 59 420542 420561 GATTTAGTCGAACAGACCGA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG33992 FBgn0045202 FBtr0100045 1 1 1 60 2L 327806 327824 AATACATGGAGTGCAAGGA 58 327764 327784 TGGATTGGATCACACTTATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3345 FBgn0031240 FBtr0078127 1 1 1 107 2L 270510 270528 TTTAAACGACGATCTCAGC 57 270598 270671 TGATAAGCTTTGTAGTGCAC 58 NA Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 2 7 8 166 2L 119224 119295 TAATGCAGACTGATGTCCTG 59 119020 119038 TTGAGCCATGGTGTTTAGG 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-1854b FBgn0083041 FBtr0113569 2 1 1 62 X 17039685 17039703 GATCCTTACAGGGTTGTGG 59 17039641 17039661 AGAGGAATAGCTAATCATGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0269 FBgn0029067 FBtr0077226 3 1 1 81 X 21192724 21192742 ATACTACAGACAGCACTGC 59 21192538 21192682 TATCCTATTTAGGTCACTGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32521 FBgn0052521 FBtr0077234,FBtr0077235 1 2 3 79 X 21077234 21077252 TACGATAACAACGGTGGTG 59 21077173 21077193 GGATTCGAGAAGAAATTGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1702 FBgn0031117 FBtr0077310 2 1 1 130 X 20340468 20340547 GTGAAATCGAACAGACACG 59 20340641 20340659 TTTGTAGACGAACTCGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Obp19c FBgn0031111 FBtr0077327 2 1 2 68 X 20289469 20289487 GATCAAGTTGGTGAGTAGC 57 20289419 20289440 CGAATGAGAAGTATTAGTGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fu FBgn0001079 FBtr0074602 1 1 1 139 X 18554036 18554054 TGTTCCTCAACTTCCTCAC 59 18554225 18554243 AATCCGTTCTACAAGCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074573,FBtr0074575,FBtr0074574,FBtr0074571,FBtr0074570 3 5 6 81 X 18286507 18286593 GTTCATCAAACATCACCAGG 59 18286445 18286463 ATTCAGGACATAGACACGC 59 NA Drosophila melanogaster 50 nonA FBgn0004227 FBtr0100586 3 1 3 144 X 16259516 16259534 AATAGCAATTCGCCATTCG 58 16259713 16259733 CCACAGATCTATTGGTTACTG 57 NA DesignNoJunction Drosophila melanogaster 50 Gbeta13F FBgn0001105 FBtr0074109,FBtr0074106,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107 2 6 6 60 X 15755481 15755499 GCTCATTATCCGACTAAGC 57 15755523 15755614 CTCTTGTTAGATGGTGGCT 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG8959 FBgn0030691 FBtr0074192 3 1 1 146 X 15677083 15677102 CGTCAGTATCATATCACCGA 58 15676900 15676918 TAAATTACCAGATCGCGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG17209 FBgn0030687 FBtr0112987 1 1 1 90 X 15659001 15659019 AAGTGCGTCTCAATATGGT 58 15659070 15659165 GAGTTTCGTATATGAATCCAGG 58 NA Drosophila melanogaster 50 CG15031 FBgn0030623 FBtr0074023 2 1 1 60 X 15138406 15138424 AAAGGTATCGAGTTTCGTC 57 15138364 15138384 GAGTGTATATTGTTCGGTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14414 FBgn0030571 FBtr0073931,FBtr0073930,FBtr0073932 3 3 3 295 X 14475629 14475647 CAATGCGCTACTGAAACTG 59 14475980 14475998 CGCGATCCTTGTTAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11158 FBgn0030511 FBtr0073812 2 1 1 63 X 13577219 13577294 GATGTTCCGGTCTTTAGGG 59 13577320 13577339 AGTTGGTATACTCCCAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 comt FBgn0000346 FBtr0073754 2 1 1 111 X 13153746 13153837 GAAGAAGACTGTCTCCCAG 58 13153909 13153930 GAAATTGAAGACCAGTGATTGG 59 NA Drosophila melanogaster 50 CG15734 FBgn0030374 FBtr0110815,FBtr0073636 1 2 2 72 X 11980917 11980935 CACACCTATCAAGTTTGGC 58 11980783 11980884 ACTTATCGGGCGAATAATAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp311a1 FBgn0030367 FBtr0073640,FBtr0073639 1 2 2 107 X 11924493 11924511 CAAATTCGAGGGTCAATCG 58 11924351 11924369 TATAGCACAAACGACATGG 57 NA DesignNoJunction Drosophila melanogaster 50 Usp7 FBgn0030366 FBtr0073641 2 1 1 93 X 11919084 11919159 CTACACATTTAAGGGCACCA 59 11919010 11919028 GATGCTAAGCGATAGTCGT 59 NA Drosophila melanogaster 50 CkIIbeta FBgn0000259 FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559 1 5 6 162 X 11689033 11689147 TGTTCCAAGGCTATATGGA 57 11689687 11689705 TTGTATTCGTGCGTATGTG 58 NA InUTR Drosophila melanogaster 50 CG32700 FBgn0052700 FBtr0071374,FBtr0071373 3 2 2 171 X 9404563 9404581 GATGGTGATGACTTGGAGG 59 9404410 9404428 TAATTTGAAGCGATGGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mxc FBgn0005639 FBtr0071312 3 1 1 81 X 9138109 9138127 GGAATTCTACTTCGGTGAC 57 9138170 9138250 CAATGGTACATATGGATCCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fh FBgn0030092 FBtr0071348 2 1 1 107 X 9042493 9042511 ATCTACAAGCACAGTGGTC 59 9042404 9042422 TTAACTACAGTAGGGCAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 e(r) FBgn0011586 FBtr0071266,FBtr0071267 1 2 2 60 X 8799183 8799201 GTTTACCAGAAGAGCACCA 59 8799141 8799160 TCTTCTCCTTGATCCAATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spirit FBgn0030051 FBtr0071231,FBtr0071230 3 2 2 87 X 8466541 8466559 GAGGTTCGACCACTATGTG 59 8466321 8466340 CTTGTTCAGTTCATTGCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Upf2 FBgn0029992 FBtr0071117 2 1 1 60 X 7966165 7966186 TGAAATAAGCGAGATAGACGAG 59 7966062 7966080 CTGATCATTCGATGACCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG14436 FBgn0029902 FBtr0070977 2 1 1 127 X 6694188 6694206 GATGATGCGATGGATTTGG 59 6693857 6694097 AGTTTCATACTGGTGGCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdk7 FBgn0015617 FBtr0070756 3 1 1 130 X 5202772 5202862 GTTTGCCACAGTTTACAAGG 59 5202661 5202680 ATATCTTGATCTCACGCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4313 FBgn0025632 FBtr0070327,FBtr0100659 3 2 2 62 X 1947160 1947178 TGCTTTAATCTGCCATTGG 58 1947204 1947222 CAGATCACTATGGGTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11398 FBgn0040366 FBtr0070250 3 1 1 60 X 1108285 1108307 CATCTCTTCGTCCATAGTATCTG 59 1108247 1108265 TATAATCTGCTCCGCAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3713 FBgn0040343 FBtr0070195 2 1 1 64 X 740980 740999 ACTGACCTTTGAACTCATCC 59 740935 740953 CTTCGAAGCTATCATCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Suv4-20 FBgn0025639 FBtr0070151 2 1 1 106 X 547480 547499 CTACGATATAGCCATCCAGC 59 547262 547411 ATCGGACGATATGATCGTG 59 NA Drosophila melanogaster 50 CR41604 FBgn0085814 FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269 3 4 4 104 U 3449415 3449487 TTTCTGAAGCAAAGTCCCA 59 3449555 3449573 CTTGATACTGATCTCCCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG40188 FBgn0058188 FBtr0113821 1 1 2 60 U 2233302 2233323 GTGTACCTCTTAAACTTTCCTC 58 2235793 2235812 TAATCGAACGAATCAAGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41327 FBgn0085617 FBtr0114061 3 1 1 129 U 1165947 1165966 AATACATCCTAGTCGGACAC 58 1166058 1166076 TTAATTCTTGAGGTCCCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40189 FBgn0058189 FBtr0113823 3 1 1 121 U 40282 40300 TACAAAGGAAGGTTGATCG 57 40994 41728 ATGATATCTTTCGAGTGCG 57 NA Drosophila melanogaster 50 CG2003 FBgn0039886 FBtr0085870,FBtr0085871 2 2 2 64 3R 27815036 27815111 GAGATTCCTAAGACGGTGC 59 27815139 27815157 CCATAGAAGAGCAGACCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1910 FBgn0022349 FBtr0085839,FBtr0085840,FBtr0085838,FBtr0085841 2 4 4 87 3R 27576299 27576375 AATGTAAATGGTGAGCCCA 59 27576425 27576444 TGGGATTGGTTTAGTTACAC 57 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 Med FBgn0011655 FBtr0085815,FBtr0085816 3 2 2 85 3R 27440094 27440113 CTATTATCTGGATCGCGAGG 59 27440160 27440235 GGTCAAACACCTTTATGCAC 59 NA Drosophila melanogaster 50 CG15537 FBgn0039770 FBtr0113310 1 1 1 114 3R 26268921 26268939 TTCTCCATGATTGTGCTGG 59 26262230 26264029 CATGCATGCAATCTGAGAC 59 NA Nonspecific Drosophila melanogaster 50 Ptp99A FBgn0004369 FBtr0100523,FBtr0085423,FBtr0085424,FBtr0085422,FBtr0110981 1 5 5 80 3R 25300558 25301994 GGAGTCAAGGATTATACAACTG 58 25302034 25302053 AGGTTGTAGTCATTATGCGA 58 NA Drosophila melanogaster 50 Gr98b FBgn0046887 FBtr0085186 3 1 1 136 3R 23369226 23369302 CATAAATGCGTACAACTGCT 58 23369401 23369419 ATGTGAAACGCAACTTCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5468 FBgn0039434 FBtr0085029 1 1 1 288 3R 22445557 22445575 GATATTGGAGATCTGGCCA 58 22445827 22445845 TGAAACGAGCGACTTAGAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG5455 FBgn0039430 FBtr0085016,FBtr0085017,FBtr0085015 1 3 3 82 3R 22293798 22293874 CGATGATAGCGACTATGCT 59 22293920 22293938 AAGTGGGAAAGCTGTACTC 59 NA Drosophila melanogaster 50 CG33970 FBgn0053970 FBtr0100013,FBtr0100012 2 2 2 103 3R 22182066 22182084 AACAATTCTGTCCAGTGCA 59 22182151 22186297 GGTCACATATTGCACAACC 59 NA Drosophila melanogaster 50 CG5127 FBgn0039335 FBtr0084835 2 1 1 106 3R 21299358 21299379 CATACTATGTAGCATACCTGGA 58 21299446 21299521 GTATGCCCTTCAACTTCAG 58 NA Drosophila melanogaster 50 CG13659 FBgn0039319 FBtr0084828 1 1 1 111 3R 21127672 21127691 CCATCCTCCTAGAGACTCTC 59 21127765 21127843 CTCAGCAGTAGAAACTCGT 59 NA Drosophila melanogaster 50 CG33096 FBgn0053096 FBtr0114464 2 1 1 113 3R 20924090 20924108 CTTTGGGTACGACTACTCC 59 20924183 20924267 CTGATGTTGAATCTGGTTCTC 58 NA Drosophila melanogaster 50 veli FBgn0039269 FBtr0084787 1 1 2 91 3R 20890640 20890658 AATAATACCTGGAGGCGTG 59 20890503 20890585 TTTCTCCTTCGACAGACAC 59 NA Drosophila melanogaster 50 CG31381 FBgn0043799 FBtr0084711 3 1 1 60 3R 20703256 20703274 ACATCATCTACTGGACGTG 58 20703297 20703316 GTTACGAAAGTGAGTGACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31142 FBgn0047114 FBtr0084492 1 1 1 119 3R 19755134 19755254 GATAAGCTATGCAGATGGC 58 19755337 19755355 TAGAAGGCACTCAGTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7077 FBgn0038946 FBtr0084205 1 1 1 188 3R 18181542 18181681 AATTAACGAGCATTTGCCC 59 18181833 18181851 AAATTCAATCGACCTTCCG 58 NA InUTR Drosophila melanogaster 50 CG6637 FBgn0038908 FBtr0084135 1 1 1 79 3R 17691668 17691749 TGATCAAGGATTTGGGCTG 59 17691792 17691810 AATCCAACAGAGACCTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG16791 FBgn0038881 FBtr0084095 2 1 1 131 3R 17147621 17147639 GAATAGACGTGATGTTCCC 57 17147132 17147526 CAGGAGTACTCCTCTTCAC 58 NA Drosophila melanogaster 50 CG31195 FBgn0051195 FBtr0083997 2 1 1 87 3R 16585155 16585174 ATATGTGAAGAAGTGGCTGG 59 16584812 16585105 TACCACACCCTTGAATTCC 59 NA Drosophila melanogaster 50 Dys FBgn0024242 FBtr0110918,FBtr0110917,FBtr0083766,FBtr0083764,FBtr0110916,FBtr0110919,FBtr0083765,FBtr0110915 3 8 8 162 3R 15416358 15416489 ACTATATCGACCACGAACG 58 15416680 15416698 ATGCTAATCCTGTCGAGAG 58 NA Drosophila melanogaster 50 CG14294 FBgn0038656 FBtr0083726 3 1 1 60 3R 14727710 14727728 GATTTCTACGTCAAGCTGG 58 14727668 14727687 CACTATCCAATACTTCACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpb4 FBgn0053520 FBtr0100273,FBtr0083604,FBtr0100275,FBtr0083603 1 4 5 65 3R 14080037 14080113 TACAACAATCGCCTCAGAG 59 14079990 14080008 CATTATGAGACCGTGTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 14-3-3epsilon FBgn0020238 FBtr0083567,FBtr0083565,FBtr0083566,FBtr0083568 2 4 4 80 3R 14073560 14073579 ATATTGCCATGAACGATCTG 58 14073621 14073708 TCTCATAGTAGAACACCGAG 57 NA Drosophila melanogaster 50 CG5840 FBgn0038516 FBtr0083454,FBtr0083455 2 2 2 281 3R 13362216 13362235 GTATTCGTGATGATTGAGGC 58 13362551 13362569 CTACTTCGTCTTTCCCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14890 FBgn0038444 FBtr0083300 1 1 1 127 3R 12395401 12395980 AAAGGAGCCAATCATCTCG 59 12396071 12396089 TTTCATTATCCTCCGCCTG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Pak3 FBgn0044826 FBtr0083312 3 1 2 60 3R 12278002 12278020 CAAATCAAGCCCAAACCTC 59 12277960 12277979 CTCGACGTATATCCGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HtrA2 FBgn0038233 FBtr0082987 2 1 1 65 3R 10335968 10335986 AAGGTTATCGTTGGGTCAC 59 10335837 10335856 TATGTGGGTCACTATGTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Art6 FBgn0038189 FBtr0082878 2 1 1 107 3R 9771029 9771107 GAAATGCTCTGTATATGGAGG 57 9770942 9770961 TTAACCAGAGGTTTCCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14721 FBgn0037942 FBtr0082430 1 1 1 127 3R 7562049 7562067 GAAAGCACACGATACAGGT 59 7562156 7562235 CTGTGCATGATATAGGTTCCA 59 NA Drosophila melanogaster 50 CG31406 FBgn0051406 FBtr0082235 3 1 2 260 3R 6174718 6174736 AATCTTCGAGGACCAAAGG 59 6175447 6175521 TTGCATTATCGTTTGTCGC 59 NA DesignNoJunction Drosophila melanogaster 50 Dh FBgn0012344 FBtr0082080,FBtr0112870 1 2 2 121 3R 5469413 5472752 ACTCACAGGATGACTTTCTG 59 5472836 5472854 GTTCTCCTTCATTTGCCTG 58 NA Nonspecific Drosophila melanogaster 50 CG9396 FBgn0037714 FBtr0082111 1 1 1 84 3R 5397004 5397022 ATGGACTTATCAAGGCCTG 59 5396880 5396956 AATATGGTCTTGGGTCCTG 58 NA Drosophila melanogaster 50 alpha-Man-II FBgn0011740 FBtr0082031 2 1 1 82 3R 5239049 5239068 AAATCTCCTACTTTGCTCGG 59 5239110 5239463 CTGTCCATTCTTTACAATGGAC 59 NA Drosophila melanogaster 50 CG9356 FBgn0037688 FBtr0082048,FBtr0082047 1 2 2 157 3R 5228688 5228706 TGTAATCAGCCTAAGTGCC 59 5228480 5228567 TAATGAATTCCAAGGCCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8043 FBgn0037610 FBtr0081902 1 1 1 63 3R 4503735 4503753 CAAGCATGGTATTGCACTG 59 4503780 4503798 GATCATCAACTCAGGACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11694 FBgn0037571 FBtr0081859 2 1 1 71 3R 4137734 4137752 GTTCTCAGATCATTCTGCG 58 4137681 4137699 TGATCCGACATTAGAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bcd FBgn0000166 FBtr0081664 1 1 5 79 3R 2582671 2584835 CGATTTGATCTTGGAGCCT 59 2582610 2582628 TTATTCCGGTGCTCATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ccp84Ac FBgn0004781 FBtr0081693 2 1 1 138 3R 2521638 2521656 ATCCCAAGTACAACTTCGC 59 2521518 2521536 TTTACAGTACGACGGAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15597 FBgn0037420 FBtr0078613 1 1 1 197 3R 2110901 2110919 AGTTCTACTTGTGCCTCTC 58 2110634 2110652 TTTAATGACCTTCACGGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 disp FBgn0029088 FBtr0078665 3 1 1 137 3R 1677590 1677792 CTATATGAAGCGCAGATGC 58 1677471 1677492 GTGTCATACATGTTGGATATGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG41453 FBgn0084016 FBtr0111174 2 1 1 131 3L 23081059 23081080 GGTTGGAGAACAAGAATATGAG 58 23082203 23082222 AGAATAAGATTTCGATCGGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG11523 FBgn0037156 FBtr0078511 1 1 1 60 3L 22259529 22259548 TTTGCATCTCATCCAAACTG 58 22259488 22259506 ATAGTCCGGATGTTCAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5976 FBgn0036999 FBtr0078200,FBtr0078199 2 2 2 68 3L 20468597 20468683 GATATCCTACAATCCCAGCG 59 20468713 20468732 AGCTTATCGGATAGATTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5976 FBgn0036999 FBtr0078199 1 1 2 60 3L 20467698 20467716 AATCTACAATCTAGGCGCT 58 20467737 20468679 GGGATTGTAGGATATCTTAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7290 FBgn0036949 FBtr0074858 1 1 1 71 3L 20198599 20198617 GAACAACTATCCATGCAGC 58 20198546 20198564 AGATTGCATAGGTTGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32192 FBgn0052192 FBtr0075146,FBtr0075147 3 2 2 230 3L 18033710 18033728 TGATATTGTACGCTTCGGA 58 18034086 18034105 GAGAATATCCAACTCTGCTC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG16775 FBgn0036767 FBtr0075156 1 1 1 60 3L 17879308 17879329 GTGATGAATCCATCTTTATCGG 58 17879269 17879287 TACTTGACGATGCACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Oatp74D FBgn0036732 FBtr0075173 3 1 1 81 3L 17494564 17500728 ACGCCTAACAGAAATACAC 57 17500773 17500791 GGTAGATTGGTTGATCTGG 57 NA InUTR Drosophila melanogaster 50 CG33052 FBgn0053052 FBtr0075229 3 1 1 178 3L 17421027 17421045 CAAGCTGGAAAGTGATCTG 58 17420810 17420828 ATAGATGCTCTGTGAGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14059 FBgn0036690 FBtr0075289 1 1 1 191 3L 17023383 17023825 TCTGAATCGACTTGGATCC 58 17023210 17023228 GAGTGATCCCTCTTGAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5235 FBgn0036565 FBtr0075497 1 1 1 71 3L 16082903 16082922 CAATCCTGAAGTTTAAACGC 57 16082796 16082869 TAAACGTATCAGCGGAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13471 FBgn0036443 FBtr0075709 2 1 1 60 3L 14726057 14726075 ATCACGGAATTCATGGAGG 59 14726015 14726033 GTCTTTGAACTTCTTCGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10710 FBgn0036377 FBtr0075817 3 1 1 60 3L 13510213 13510233 GCAATTACCGGTATTACAACG 59 13510173 13510191 GAGATGAACTCGTAGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11253 FBgn0036338 FBtr0075894 1 1 1 101 3L 13018103 13018121 AGATACGGACCATACTTGC 58 13017963 13018038 TCCTTGAGCTGACAATCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11261 FBgn0036332 FBtr0075899 3 1 1 73 3L 13003079 13003097 CATGAACGATTTACGGAGC 58 13002952 13003042 TTTAATGCCTCTTGGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17826 FBgn0036227 FBtr0076042 3 1 1 60 3L 11942983 11943061 CCAGAACTAAACACTATGGAG 57 11943083 11943101 GACGATCCCATAAAGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 E(z) FBgn0000629 FBtr0076279 1 1 1 81 3L 10630670 10630750 ATAAGAAACTGGGACGAGC 59 10630607 10630625 GATCGTAGGGTTTAGCCTG 59 NA Drosophila melanogaster 50 nbs FBgn0086349 FBtr0076411 1 1 1 78 3L 9715362 9715380 TACAGTATGTGCCATCGTC 59 9715230 9715249 ATAATACGTCGACCATTCTG 57 NA DesignNoJunction Drosophila melanogaster 50 vsg FBgn0045823 FBtr0076398,FBtr0076399 1 2 4 186 3L 9707709 9708850 ATTTGTGCGAAGAAGTGAC 58 9709000 9709018 GAAGTTGTGGTCTTCTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6761 FBgn0036031 FBtr0076414 3 1 1 173 3L 9694600 9694618 TGAGGATTCAGGAATTGGC 59 9694392 9694410 TTTGATAGCGAGATCCTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6694 FBgn0035900 FBtr0076656 2 1 1 99 3L 8501329 8501444 CATCTGTGTCAGCTTTCTG 58 8501248 8501266 CAAATAGTACCGACAGACG 57 NA Drosophila melanogaster 50 CG8012 FBgn0040832 FBtr0076699 3 1 1 208 3L 8208624 8208710 TCTTGATGTTCGCATTGTG 58 8208882 8208900 GTAGTATGGATACGTGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sec63 FBgn0035771 FBtr0076847 1 1 1 98 3L 7356782 7356800 CAATCTGGTCGAGAAGGAG 59 7356861 7356962 AAATACGAGTCCGATCTCAG 58 NA Drosophila melanogaster 50 Dbi FBgn0010387 FBtr0076916,FBtr0076915 3 2 2 74 3L 7126426 7126444 TACATCACCTTTGTGGAGG 58 7126481 7126500 GGTTTAAGATCGCTAATTGC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Usp36 FBgn0035633 FBtr0077103,FBtr0077101,FBtr0077100 3 3 6 189 3L 5767102 5767120 CTGAAGCAATCGTATCGTG 58 5768385 5768403 CATTGTTTCCCTTAGCCGA 59 NA DesignNoJunction Drosophila melanogaster 50 Txl FBgn0035631 FBtr0077098 2 1 1 180 3L 5759699 5759717 CTTTGAAGTTCAAGGCACC 59 5759920 5759938 TTCTGGAACTTGACGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Tie FBgn0014073 FBtr0073323 2 1 1 131 3L 4512758 4512776 CAAACATATTGCCAGCCTC 59 4512583 4512663 CTCGATGAACAATCCTCCT 58 NA Drosophila melanogaster 50 Gr64f FBgn0052255 FBtr0073201 1 1 1 111 3L 4037071 4037144 AAGCTTGAACACTATGCCA 59 4037219 4037237 ATCATGAACACTCGAGGAG 58 NA Drosophila melanogaster 50 CG1120 FBgn0035462 FBtr0073148 3 1 1 270 3L 3807923 3807944 GGATTTCAGTCAACTTATGCTG 59 3808231 3808249 CTTCAGCGACATATTCTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG16984 FBgn0062517 FBtr0072928 2 1 1 76 3L 2595971 2596045 AAATCCTGTTGTGGAGAGG 59 2596085 2596103 ATAGCTTCTTGTCCTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 E(bx) FBgn0000541 FBtr0072522,FBtr0072523,FBtr0072521 1 3 3 86 3L 245466 245936 GAAGGAAAGGGTACGAGTC 59 245398 245419 GCATATCATCCTCATTATCGGA 59 NA Drosophila melanogaster 50 gol FBgn0004919 FBtr0072460,FBtr0072459 2 2 2 137 2R 20963227 20964697 GAACATCAGTGCTGTTTGTG 59 20963053 20963071 TAACAGAGCAGAGATTGCG 59 NA DesignNoJunction Drosophila melanogaster 50 Lcp9 FBgn0025578 FBtr0072430 3 1 1 64 2R 20667812 20667886 TTTGTGATCGTTCTTGCCT 59 20667766 20667784 TTTACAACATCAGCCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or59a FBgn0026384 FBtr0072023 1 1 1 60 2R 19327792 19327868 CTAGAACTATTCCGACGCA 58 19327750 19327770 CTGTGAACTGAATTAGCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dnr1 FBgn0034738 FBtr0071837 2 1 1 60 2R 18452436 18452454 GGTGACCAATCAGTTTACC 58 18452394 18452413 ATTCTCCATGAACATGGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NtR FBgn0029147 FBtr0071762 2 1 1 102 2R 18017105 18017124 GAGTTCCCTCATTCTCATCG 59 18017189 18017279 ATATGCAGTCATCATGGGC 59 NA Drosophila melanogaster 50 CG4363 FBgn0034663 FBtr0071740 2 1 1 95 2R 17722058 17722138 GATTCCAGCAAGGATTCCA 59 17721981 17722001 CACATAGCAATACGAGTTTGG 59 NA Drosophila melanogaster 50 CG4266 FBgn0034598 FBtr0071629,FBtr0113100 2 2 2 80 2R 17054330 17054404 CGTAATGAAGGGAAATGCTG 59 17054269 17054287 TCCTTGTTAAGGTCCATGC 59 NA Drosophila melanogaster 50 CG34201 FBgn0085230 FBtr0112394 2 1 1 60 2R 16638683 16638701 TGTCATATCAGAAGGTCGG 58 16638724 16638743 ACTCAAGGTATCACTTACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9945 FBgn0034527 FBtr0086225,FBtr0086226 2 2 2 237 2R 16506497 16506515 GGATTAGTGAGCAATCCGA 59 16506716 16506794 CAAAGCCATCTTGACAAGC 59 NA DesignRelaxed Drosophila melanogaster 50 prod FBgn0014269 FBtr0086601 1 1 1 262 2R 14857641 14857660 AGGGAGCAAATTATCTACGA 58 14857332 14857350 TTGGGACACTATAAGGACG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 sano FBgn0034408 FBtr0086567,FBtr0086569,FBtr0086566,FBtr0086568 2 4 4 271 2R 14844989 14845235 TCACATCAGGTACAAGAGTC 58 14845469 14845487 TATTGCTACTGGAACTCCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG18604 FBgn0034378 FBtr0086606 1 1 1 60 2R 14591366 14591384 TCCAGTAATGTCACTGCAG 59 14591520 14591538 GATTGAAGGCATATCGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 sec6 FBgn0034367 FBtr0086709 2 1 1 93 2R 14513727 14513745 GTTGTGAAGTCCCTTTGTG 58 14513801 14513885 GATAGCTAGAAAGTCCTTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30116 FBgn0028496 FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718 3 4 4 80 2R 14363164 14363625 GGATTATCGCCTTATGAACG 58 14363103 14363121 GATTGAAAGGCTTGTTCCA 58 NA Drosophila melanogaster 50 CG30114 FBgn0050114 FBtr0086753 3 1 1 72 2R 14095517 14095536 AATAATATTCGCAACCGCTG 59 14095571 14095589 TAATCAGCAGACTGTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sub FBgn0003545 FBtr0086881 3 1 1 66 2R 13633611 13633688 TTTATGCTTTCCTCTCAACG 58 13633564 13633584 CCTCTATCTCATCTTTGAGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG30106 FBgn0050106 FBtr0086893 2 1 1 119 2R 13538599 13538673 AGTAACCTGAAGCATCTCG 59 13538498 13538516 GTAGTAGACCAGGAAGTGC 59 NA Drosophila melanogaster 50 CG18631 FBgn0034239 FBtr0086944 1 1 1 60 2R 13431029 13431047 AACTGGAACGAGAGTTTCC 59 13431436 13431454 GTGTACGCAAAGTTTAGGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15701 FBgn0034095 FBtr0087131 2 1 1 156 2R 12120367 12120475 GTACAAGGAAGTTCAGTACG 57 12120594 12120612 ATAGCTCCTCAGATCACAG 57 NA Drosophila melanogaster 50 CG30090 FBgn0050090 FBtr0087279 1 1 1 80 2R 11577929 11577995 CTTTCAAAGCTCACATCTCG 59 11578035 11578056 CAAACCATTCTATGCTATCGAC 59 NA Drosophila melanogaster 50 CG12963 FBgn0034031 FBtr0113082,FBtr0087337,FBtr0113083,FBtr0087338 3 4 4 130 2R 11449472 11449490 ATGTGTAACCTGACCACTC 58 11449584 11449602 GAATGTGGATCTGTCTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17389 FBgn0033938 FBtr0087490 3 1 1 72 2R 10337029 10337294 TTACTCAGCAATCAACACC 57 10337330 10337348 TAGGAGGATACTCTGGTCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG17386 FBgn0033936 FBtr0087488 3 1 1 60 2R 10310292 10310310 TTCGCCTATATCTTCTGCT 57 10310334 10310352 ACTGCTTATACCAGACACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8617 FBgn0033925 FBtr0087561 2 1 1 67 2R 10243737 10243755 GATTTGAGCATCATGAGCG 59 10243688 10243707 ATCATTGAAGCTCATTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8589 FBgn0033921 FBtr0087562 1 1 1 80 2R 10189226 10189244 ATCGACTGTTATATCCCGT 57 10189095 10189182 GGGTTCTAAGGGTACTCTG 58 NA Drosophila melanogaster 50 CG13331 FBgn0033850 FBtr0087672,FBtr0087673 1 2 2 275 2R 9409608 9409821 AGAAGACCAGACTGAGAGG 59 9410060 9410078 GTTCCATGTTATAGGTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34312 FBgn0085341 FBtr0112510 2 1 1 69 2R 9097696 9097772 TCTGTTTGGGTGAAATCCA 59 9097645 9097664 CATAAACAATGCGAATTGCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG13321 FBgn0033787 FBtr0087792 3 1 1 154 2R 8841820 8841838 ACCAGTGTTTGTACATCCC 59 8842107 8842125 ATAGATCTGATCGCCATCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3884 FBgn0033786 FBtr0087800 3 1 2 60 2R 8837217 8837235 CATCGAGCTTTGTTCATCG 59 8837175 8837196 AAATCTCATAGGAATCCAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17760 FBgn0033756 FBtr0110824 2 1 1 82 2R 8514600 8514619 TATTCATGGCCATACAGTCG 59 8514663 8514750 GGCAAGTTTACTATGCTCCT 59 NA Drosophila melanogaster 50 CG8979 FBgn0033669 FBtr0088053,FBtr0088051,FBtr0088052 1 3 3 123 2R 7855431 7855449 TGTATTCACGGGAAACTCG 59 7855269 7855344 ACTTGGAATGAAGGATCCG 59 NA Drosophila melanogaster 50 CG30026 FBgn0050026 FBtr0088143 2 1 1 62 2R 7296500 7296519 ATATCCGACTTACAGACCTC 58 7296457 7296475 GAAGAAACGGGAGGTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr47Ef FBgn0033603 FBtr0088186,FBtr0088187 3 2 2 60 2R 7157762 7158245 AGTAAAGCTCTGGTGATCAC 59 7157721 7157739 ATTTGTTATCCAGCTTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34223 FBgn0085252 FBtr0112416 1 1 1 83 2R 7123448 7123526 ACCTCAAAGTTCAGTTCCA 58 7123572 7123591 GGTTGAAGACGACTAAAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 StIP FBgn0033540 FBtr0088212 1 1 1 81 2R 6534913 6534991 TTCTGCTGGATTCTCTTCC 58 6535033 6535054 TCAGAATCTACCTTGTAGACAG 58 NA Drosophila melanogaster 50 Or46a FBgn0026388 FBtr0088330 3 1 2 190 2R 6027757 6027867 GTGTTATCTGACGAGAGGC 59 6028077 6028095 ATAAAGAGGAGCGCAATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8080 FBgn0033373 FBtr0088633 1 1 1 171 2R 4978187 4978205 GTAGCAACGGCAATATTCC 58 4977977 4978052 TCGCCAATAAATACCTCGT 58 NA Drosophila melanogaster 50 CG12126 FBgn0033280 FBtr0088801 3 1 1 92 2R 4150528 4150548 CCTAAACCGAATCAAGAAGTC 58 4150456 4150474 AAACTGATCAAAGGCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11198 FBgn0033246 FBtr0113054,FBtr0088871,FBtr0113053,FBtr0088872 3 4 4 80 2R 3864340 3864358 TTGGAATTAAGGAGGACGT 58 3864216 3864296 CGGAGATGTATATCCTCGG 58 NA Drosophila melanogaster 50 CG12824 FBgn0033222 FBtr0113050 1 1 2 137 2R 3678003 3678082 GAATTATCCTACGCATTTGGAG 59 3678236 3678254 TAAGTAGAGGAACATGGCG 58 NA DesignNoJunction Drosophila melanogaster 50 boca FBgn0004132 FBtr0088953 2 1 1 60 2R 3454055 3454074 AAGGATATACGCGACTACAG 58 3453852 3454033 CTTCCTCCCATTGATCTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fmo-2 FBgn0033079 FBtr0086148 3 1 1 102 2R 2531041 2531731 CAGATAAGTTTAAAGACGCGC 59 2530959 2530977 CTTAGGAAGACCTGCTTGG 59 NA Drosophila melanogaster 50 Src42A FBgn0004603 FBtr0085968,FBtr0085967 3 2 2 82 2R 1896787 1896807 GATACGGTTAAGCATTATCGC 59 1896851 1896936 TGAAGGGTTCTGAATGTCG 59 NA Drosophila melanogaster 50 CG17337 FBgn0033035 FBtr0086038 3 1 1 95 2R 1586849 1586931 CTGAGTACAAGAAAGACATTGG 58 1586987 1587005 CAGAAAGACTGGGATAGCG 59 NA Drosophila melanogaster 50 CG8245 FBgn0033031 FBtr0086036 3 1 1 61 2R 1556880 1556901 GCACTGGTTATAACCATTACAC 59 1556922 1557002 AAGGCAGAAATTGATTCCTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG10395 FBgn0033019 FBtr0086087 3 1 2 110 2R 1238315 1238393 TGGTGAAAGAAGGTTCTAAGG 59 1238465 1238483 TTGAATTAGATGCAAGCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Uhg2 FBgn0063449 FBtr0079906 1 1 1 101 2L 9894336 9894354 GAGCACATGGATTTACCGA 59 9893864 9894075 AACGTCACTCTTATACAGTCG 59 NA Drosophila melanogaster 50 fs(2)ltoPP43 FBgn0004811 FBtr0081316 3 1 2 99 2L 19793389 19794590 TACTTAAGTGTGATTCCTGTGG 59 19793311 19793329 AGTAGTTCTCCTGGTTCGA 59 NA Drosophila melanogaster 50 CG10702 FBgn0032752 FBtr0081175,FBtr0081176,FBtr0081174 1 3 3 80 2L 19067507 19067579 AAGGACAAGTACGTCATGG 59 19067445 19067463 GGAAATAACATAGCCGTGC 58 NA Drosophila melanogaster 50 Fas3 FBgn0000636 FBtr0112804 2 1 4 204 2L 18384849 18384867 TACTGATTGTGTTTGCACG 58 18386298 18386316 TCCAATTTATCGGTTACGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG31803 FBgn0051803 FBtr0081010 1 1 1 61 2L 17412280 17412298 CTATATTGGCAAGGGAGCC 59 17412181 17412255 GTCCAGCTTAACGTAGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ChLD3 FBgn0032598 FBtr0080892 3 1 1 221 2L 16741881 16741959 CATTTCTGAAATTCCTCGACG 59 16742142 16742160 AGAATCGATCCTCTTGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 fzy FBgn0001086 FBtr0080833 1 1 1 91 2L 16311781 16311799 CACATCCGAGAGGATTCTG 59 16311907 16311925 CCACAGCCACTATATTGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG18478 FBgn0028517 FBtr0080757 1 1 1 74 2L 15670249 15670269 CTTGGACACTAATAGTAGCAC 57 15670304 15670423 GCTCTTCAATTTGTTGAAGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15269 FBgn0028878 FBtr0080704 2 1 1 60 2L 15109783 15109801 AACAGTATTAGGAGCCCAC 58 15109825 15109843 AGGCATAAGGAGTTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 elB FBgn0004858 FBtr0080636 3 1 3 100 2L 14391196 14391323 TTATCATCCGTACGGATGG 58 14391114 14391134 GAGAAATGATGGGTTTGACTG 59 NA Drosophila melanogaster 50 CG33681 FBgn0053681 FBtr0091661 3 1 1 118 2L 14005803 14013475 GGTTCTGTTAACGATTACGAG 58 14013553 14013573 GTGAATAGAACAGCACATCTC 58 NA Drosophila melanogaster 50 RpL24 FBgn0032518 FBtr0080524 2 1 1 71 2L 13394263 13394281 TATCAAGCTTGGCTTACAG 57 13394210 13394229 TGATGATTCATGACGTACAC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG17036 FBgn0032449 FBtr0080408 3 1 1 60 2L 12699689 12699772 AAGTGATCTCCTACATCCAG 58 12699648 12699667 TAAACACTGAGCTTATTCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 giac FBgn0032368 FBtr0080268 3 1 1 113 2L 11610828 11610846 CGTACTCAGAGCTACAGTG 59 11610674 11610751 TCCATATACTTCAACGCGA 58 NA Drosophila melanogaster 50 CG34162 FBgn0085191 FBtr0112353 1 1 1 135 2L 11532725 11532743 TAGCGGTGATGAGATTCTG 58 11532841 11532924 TGATGGTATCATTGCAATCC 58 NA Drosophila melanogaster 50 CG4705 FBgn0032339 FBtr0080195,FBtr0080196 1 2 2 93 2L 11092644 11092662 ACCCTATTTGTTCCTTCGT 58 11092716 11092792 GTGACCAGTTCTATTTCATTGG 59 NA Drosophila melanogaster 50 CG33300 FBgn0053300 FBtr0079904 1 1 1 60 2L 9902620 9902640 CCACGATTAAATCCACATCTG 59 9902580 9902600 GTCGATTTAATGGTCGTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9463 FBgn0032066 FBtr0079744 1 1 1 112 2L 8767704 8767725 TGGCTATTATCGCTCTAATCAC 59 8767556 8767634 GCTCATTGACATACTTGATCAG 59 NA Drosophila melanogaster 50 CG10806 FBgn0031865 FBtr0079374,FBtr0079373 3 2 2 83 2L 6862440 6862458 CGGTGGCTACCTAATATCG 59 6862304 6862394 CAGCCTACATTCTGGAAGAG 59 NA Drosophila melanogaster 50 CG31643 FBgn0051643 FBtr0079182 3 1 1 108 2L 6040765 6040784 CCTACGGCTACCAAATAGAC 59 6040855 6040932 ATTGCCACTTTGGTTATGC 58 NA Drosophila melanogaster 50 Traf1 FBgn0026319 FBtr0077429,FBtr0077430,FBtr0112925 2 3 3 70 2L 4379579 4379597 AGATCCAGATGCTCAAGTC 58 4379631 4379649 GATCTTCCACAACAGAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17224 FBgn0031489 FBtr0077672,FBtr0077671 2 2 2 112 2L 3017310 3017391 ATGAGATCGCTATTCTCGG 58 3017216 3017234 TATGGTCTGAAATCCGTCG 59 NA Drosophila melanogaster 50 CG9961 FBgn0031451 FBtr0077740 1 1 1 173 2L 2744537 2744624 GACAAGAAATGTAAGTCCTTGG 59 2744385 2744403 ATCCTTCAAAGCTCTCAGG 58 NA DesignNoJunction Drosophila melanogaster 50 VGlut FBgn0031424 FBtr0077769 3 1 1 62 2L 2405010 2405028 ATGAGGTGCAATATGTCGG 59 2405054 2405516 GTTCATGAACACAGTCCCA 59 NA DesignRelaxed Drosophila melanogaster 50 robl22E FBgn0028570 FBtr0077800 3 1 1 85 2L 2290569 2290587 TCAGTCCATGAAGAACGTC 59 2290502 2290520 GTGTCAGAGTGTAGTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15387 FBgn0031403 FBtr0077841 1 1 2 69 2L 2226059 2226077 GATTCTCATGATGCAGCAC 58 2225951 2225969 CCCATGACCCTTAATGACC 59 NA DesignNoJunction Drosophila melanogaster 50 Gr22f FBgn0041249 FBtr0077902 2 1 1 63 2L 1755575 1755593 AATTTCTGGGACTTCTGGC 59 1755530 1755548 TTTGGTCTCCACACTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31937 FBgn0031360 FBtr0077884 2 1 1 70 2L 1730318 1730336 ATCTCGACGAGCATAAGAC 58 1730369 1730388 ATTGACAAGGACATCCAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14343 FBgn0031325 FBtr0077975 2 1 1 63 2L 1219860 1219878 TTGAGTATTGGAACCTGCA 58 1219905 1219923 CAGACATCCATCGACTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ds FBgn0000497 FBtr0078045 2 1 1 90 2L 648358 648494 ATTTACAGTATTACGGGCGG 59 648287 648305 GTTCTCTATCCAAGGGTCG 59 NA Drosophila melanogaster 50 Pph13 FBgn0023489 FBtr0078070 3 1 1 146 2L 578333 578351 CTTGGCGGAGATTATAAGG 57 578524 578542 GTTATCAAGGGAGTTCGAG 57 NA DesignNoJunction Drosophila melanogaster 50 alpha-Adaptin FBgn0015567 FBtr0089488,FBtr0089489 3 2 2 81 2L 411176 411195 CTATTCGTGAGGAAATGGTG 58 411046 411132 ATAACGTCCACATACCAGG 58 NA Drosophila melanogaster 50 mir-2b-1 FBgn0046824 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 l(1)G0196 FBgn0027279 FBtr0112508 3 1 5 104 X 21900448 21902842 AGAACCGGTAGTTTCTTCTC 59 21902909 21902927 TCTGAGTTACTAGCAGTGC 58 NA Drosophila melanogaster 50 CG9992 FBgn0030744 FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309 1 5 5 93 X 16277004 16277022 AGTCCTACTTCCGAGACTG 59 16276867 16276947 CAAAGTTGTGCAAGTCCTG 59 NA Drosophila melanogaster 50 CG1640 FBgn0030478 FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769 2 6 6 83 X 13268114 13268132 ATTCAACCGTTAGACGTCC 59 13268315 13268334 TATGTTATCCAGTGTGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4332 FBgn0030456 FBtr0073726 3 1 1 60 X 13049794 13049812 GCTAAAGGATCTAGTGCCC 59 13049836 13049854 GTAGTGGAAGCTGAATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ant2 FBgn0025111 FBtr0073426,FBtr0073425 2 2 2 100 X 10674035 10674053 TTTATCCACTGGACTTTGC 57 10673656 10673677 GATCACCTTCATTAGACAATCG 58 NA DesignNoJunction Drosophila melanogaster 50 Nrg FBgn0002968 FBtr0071209,FBtr0071208,FBtr0071207 1 3 3 80 X 8426429 8426450 GCAACAGAATAAGGAAAGTGAC 59 8426489 8438894 ATCCAACTATATTCTGGCTCG 59 NA Drosophila melanogaster 50 SK FBgn0029761 FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070765,FBtr0070767,FBtr0070769,FBtr0070766 1 7 7 80 X 5270149 5270167 ACAGATCTCATCTGGATGC 58 5270207 5272346 TCTTCCATATACCTAGGGTAGTC 59 NA Drosophila melanogaster 50 CG15578 FBgn0040905 FBtr0070659 2 1 1 60 X 4171818 4171838 TCCATTATAATGGTCCTGGAG 58 4171778 4171796 AGATGTTCAGCTCTGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14818 FBgn0026088 FBtr0070364 2 1 1 148 X 1773493 1773511 AACAATCATGATCCCTCGT 58 1773302 1773320 GACATAATGTCGTCTGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TRAM FBgn0040340 FBtr0070168,FBtr0070167,FBtr0070169 1 3 3 60 X 830597 830615 ATATGGCAAGCCATACACC 59 830639 830657 GTAGAAGAATATCGCGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41576 FBgn0085702 FBtr0114151 3 1 1 61 U 6401115 6401135 CGTAGTGATTCCATGATAAGC 58 6401157 6401176 GAAGCAGTTCAAGACAAGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG40600 FBgn0085499 FBtr0113910 3 1 2 60 U 5775745 5775763 AGTTACCATTGCCTTAGGT 58 5773900 5773918 ATCATTAGGGCAAGTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wdb FBgn0027492 FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206 1 7 7 125 3R 23392424 23392442 AAATTCTTAGGACTGCGGG 59 23392253 23392336 GTTGATGATACTGCCAAGGA 59 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100638,FBtr0100637 1 3 17 115 3R 20508113 20512918 AGGGCGAAGACATATTGTG 59 20512997 20513015 GGAGAAAGACCACTTCGAC 59 NA Drosophila melanogaster 50 crb FBgn0086905 FBtr0084603 2 1 2 117 3R 20132499 20132517 GGAGTACACTGGTGAACTG 59 20132598 20133928 ACAGTTGTAACCCGATGAG 59 NA Drosophila melanogaster 50 beat-IV FBgn0039089 FBtr0084433 2 1 1 82 3R 19399755 19399773 GGAGTTCTACCGATACGTG 59 19399819 19400034 AAAGCTCCTCAATGACTCG 59 NA Drosophila melanogaster 50 p53 FBgn0039044 FBtr0084359,FBtr0084360 2 2 2 93 3R 18878869 18878887 ATCAAGGAGGATATTCCGA 57 18878661 18878742 GATTCCCGGAGTTTAATCC 57 NA Drosophila melanogaster 50 CG31176 FBgn0051176 FBtr0084114 3 1 1 108 3R 17499108 17499127 CAAGAAGGTCACCTTTAGTG 58 17498770 17499038 AAGATGATACTTGCTCTGTG 57 NA InUTR Drosophila melanogaster 50 alt FBgn0038535 FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416 3 6 6 165 3R 13500933 13500951 GTAGCAACCACAATAGCAC 58 13500723 13500804 AATGTGTTTGTCGTCTTGG 58 NA Drosophila melanogaster 50 Art3 FBgn0038306 FBtr0083135,FBtr0083134 1 2 2 60 3R 11054140 11054158 ATCCTATCCATCTTCGCCT 59 11054098 11054116 CCGAGTTATCTATGCCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5961 FBgn0038056 FBtr0082681 3 1 1 156 3R 8284853 8284932 GCTTGTGTCAAAGTATGGG 58 8284715 8284734 CCATTCTCAGGTACGTAGTC 59 NA Drosophila melanogaster 50 Fer3 FBgn0037937 FBtr0082435 3 1 1 61 3R 7519350 7519368 ATCCACATCATCTGCATCC 59 7519307 7519325 ATGATTATAGGGCGAAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Est9 FBgn0015577 FBtr0081556,FBtr0081555 3 2 2 107 3R 3321249 3321666 GAATACCTTCAGATGGTTTCC 58 3321162 3321180 GAAGCGGTACAAATACGTC 58 NA Drosophila melanogaster 50 CG2017 FBgn0037391 FBtr0078664,FBtr0114518,FBtr0078663,FBtr0078662,FBtr0078661 2 5 5 93 3R 1685454 1685472 ATGCACGAGATTCAGTCTG 59 1685168 1685189 CATTGTACTTGTAGTTGACCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2663 FBgn0037323 FBtr0078795,FBtr0078796 3 2 2 193 3R 1227160 1227241 TACTGGACTATGTGCACTG 58 1226985 1227003 GTCCAGGATGAAGATGTCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG33927 FBgn0053927 FBtr0091931 3 1 1 269 3R 516125 516143 ATCAGTGTCGTTTAAAGGC 58 515816 515834 CCATTATATGCACTGGACC 57 NA DesignNoJunction Drosophila melanogaster 50 CS-2 FBgn0029091 FBtr0078476,FBtr0114557 3 2 2 121 3L 21959313 21959331 TCCTCAAGTCAATTGTCCG 59 21959413 21960242 GTCGAAGAAGATGTTAGTTTCC 59 NA Drosophila melanogaster 50 CG11307 FBgn0037106 FBtr0078420,FBtr0078421 1 2 2 167 3L 21612250 21612329 AATTTCAGAAACAGCCGAC 58 21612460 21612478 CTTAAGGACGACTTGACGT 59 NA Drosophila melanogaster 50 CG6479 FBgn0036710 FBtr0075246,FBtr0075245 2 2 2 93 3L 17330908 17330926 TCTTGCATAGCTGACTACC 58 17330774 17330853 GGAATATTATAGCTGCATCGG 58 NA Drosophila melanogaster 50 endos FBgn0061515 FBtr0075783,FBtr0075782 2 2 2 229 3L 14023965 14023984 CTCAAGTCCAAGTATCCCAG 59 14023369 14023387 TTACAGGGTTGGATGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11255 FBgn0036337 FBtr0075896,FBtr0075895 3 2 2 166 3L 13013917 13014182 TACATTTCGGGCTTCTTCC 59 13013769 13013788 AAGATGATGTCCACGTAAGG 59 NA Drosophila melanogaster 50 mirr FBgn0014343 FBtr0075912,FBtr0075911 2 2 2 113 3L 12698329 12698347 GATCTGAAGGAGAACCTGG 59 12698424 12700490 CAAATCCATGCCATAGCTG 58 NA Drosophila melanogaster 50 rols FBgn0041096 FBtr0076055,FBtr0076057,FBtr0076053 3 3 5 169 3L 12006171 12006189 TTAACCACAAGAATCTGCG 58 12005820 12006038 ATGAGTATGATCTCCCGAC 57 NA Drosophila melanogaster 50 CG14130 FBgn0036210 FBtr0076031 1 1 1 189 3L 11809146 11809228 GGATAGCACGAGATACTGC 59 11809381 11809399 GTTCTTTAGAGACGCCTCC 59 NA Drosophila melanogaster 50 scyl FBgn0041094 FBtr0076169,FBtr0076168 3 2 2 60 3L 11247415 11247433 AGTTCATGAAGAGTTTGGC 57 11247455 11247475 TTCTTGGTGATCGTATACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8012 FBgn0040832 FBtr0076699 1 1 1 225 3L 8208607 8208625 AGTCATGTTGGTCAAGGTC 59 8208882 8208900 GTAGTATGGATACGTGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nmo FBgn0011817 FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758 3 6 6 141 3L 8040250 8040352 GTCTTCGATCCGGATAAGC 59 8040457 8040475 AATCAGCCGTATACTGACG 59 NA DesignRelaxed Drosophila melanogaster 50 Src64B FBgn0003501 FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321 3 5 5 178 3L 4596210 4596228 TAAATCCCGCGATGAATCC 59 4595932 4596069 TCTCAAAGAACCAGTCTTCG 59 NA Drosophila melanogaster 50 Cip4 FBgn0035533 FBtr0073339,FBtr0113138 2 2 2 82 3L 4327039 4327057 CCATTAGAGGCACGATGAG 59 4325402 4326994 CAGGGAATTCTTATTGCTGC 59 NA Drosophila melanogaster 50 CG12734 FBgn0035411 FBtr0073036,FBtr0073035 3 2 2 141 3L 3183013 3183031 TACAAGATGGTACGCATGG 59 3183135 3183209 GTATCAACATCTCACAACGC 59 NA Drosophila melanogaster 50 yellow-g2 FBgn0035328 FBtr0072883 1 1 1 60 3L 2277321 2277339 CTCTACATAGCCCTCATCC 58 2277363 2277381 TCAGGTAGGTGAAGTACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15800 FBgn0034904 FBtr0072245 1 1 1 74 2R 19678513 19678531 ATGAGAAACACGAAGAGCC 59 19678457 19678475 AGATCTGCAGCTCAATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rrp4 FBgn0034879 FBtr0072111 2 1 1 83 2R 19443487 19443505 GAGAACATCAAGTCCTCGG 59 19443422 19443440 CACATAGCGACTCTTAAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10505 FBgn0034612 FBtr0071619 2 1 1 80 2R 17177151 17177170 TCTTTAAGGTCTACGGATGG 58 17177019 17177108 GCTGGAAGGAATGAATAGC 58 NA Drosophila melanogaster 50 Khc FBgn0001308 FBtr0087184 3 1 1 88 2R 12157150 12157307 CTGTGACAAACATGAACGAG 59 12157081 12157099 TTTCTTCTGGTTCTCCAGG 58 NA Drosophila melanogaster 50 CG13167 FBgn0033706 FBtr0088000 2 1 1 61 2R 8145267 8145285 CTCCTATACGAAGGCACTC 58 8145310 8145328 TTCGCACTTGGTATTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11866 FBgn0033486 FBtr0088423 3 1 1 96 2R 6007151 6007169 ATGCTACATGCGTCTATCC 59 6007229 6007311 GACTTCGTCTAGTATGGCG 59 NA Drosophila melanogaster 50 kermit FBgn0010504 FBtr0088813,FBtr0088814,FBtr0088812,FBtr0088811 1 4 4 60 2R 4035544 4035562 AGCTGTACCAGAAGATTGC 59 4035502 4035520 GTGCAGAAGAGAATGTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30492 FBgn0050492 FBtr0088917,FBtr0088913,FBtr0113382,FBtr0088916,FBtr0088914,FBtr0088915 2 6 6 94 2R 3526397 3527215 CGGTGCTAAATAAGATTGTGG 59 3527270 3527289 GAAATTCTCGTCAATGTGGC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111064,FBtr0111057,FBtr0111100 1 3 60 82 2R 3247001 3247019 ACCTTAAGGGAAAGAGCAG 58 3236471 3246958 CTTGTACCATCTAAAGAAAGGC 59 NA Drosophila melanogaster 50 CG9410 FBgn0033086 FBtr0086117 1 1 3 177 2R 2556719 2556737 ATTGAAACAAGGTCAGCAG 58 2557032 2557050 TTGTGGTAATTGCTGACGT 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG17994 FBgn0033072 FBtr0086001 3 1 1 80 2R 2096656 2096674 ACTGTTACAGTTCCCACAG 59 2096594 2096612 GTTGCAACAACTCCTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ret FBgn0011829 FBtr0081496,FBtr0081494,FBtr0081493,FBtr0081492,FBtr0081495 2 5 5 90 2L 21184334 21184355 GAGCCTGTTAATGTTAAGATGG 59 21184210 21184286 CACGATGAACCAACTTTAACTC 59 NA Drosophila melanogaster 50 CG10722 FBgn0032848 FBtr0081335,FBtr0081334 1 2 2 194 2L 20095930 20096011 AACTTCAGCGTTACAACGA 59 20096166 20096187 ACTATGTGTACACAATGTACCC 59 NA InUTR Drosophila melanogaster 50 Ca-alpha1D FBgn0001991 FBtr0090003,FBtr0090006,FBtr0090005 3 3 4 86 2L 16180232 16182782 GTCCAATTGTTTAAGGGCA 58 16182893 16182911 ATAGACCAGATAGGTTCCG 57 NA Drosophila melanogaster 50 BicC FBgn0000182 FBtr0080805,FBtr0080804,FBtr0080803 2 3 3 163 2L 16045385 16045854 ATGTTCAGGTCATATTCTCCAC 59 16046038 16046056 CTCCATCTGGACATTCACC 59 NA Drosophila melanogaster 50 pburs FBgn0032546 FBtr0080634 3 1 1 63 2L 14417236 14417254 GATATAGCCAAGGCACTGG 59 14417191 14417209 TTGATCAAGTGGATCTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31704 FBgn0051704 FBtr0080273 3 1 1 72 2L 11840774 11840792 GGTATTCCAGTACTCCTGC 59 11840828 11840846 ACTATAGGTCACGGAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cdc2 FBgn0004106 FBtr0080051 1 1 1 97 2L 10385157 10385175 TGACTCGGAAATTGACCAG 59 10385021 10385039 TCTTATAGTCGGGTAGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 D12 FBgn0027490 FBtr0079707 3 1 1 63 2L 8434907 8434925 AGTTTACGGGAGATAGTGG 58 8434862 8434880 AAACATCTTTGAGAGCTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079623 1 1 4 81 2L 8244689 8244707 CCATATCCTTTGGCATCCT 59 8244491 8244644 GAGAGGTTTACACAACGCT 59 NA Drosophila melanogaster 50 slmo FBgn0029161 FBtr0079218,FBtr0079217,FBtr0112945 1 3 3 71 2L 6047423 6047441 AACAGATGGTGCTGAAGAC 59 6047370 6047388 CATAGTAGAGCACCTCGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15362 FBgn0031378 FBtr0077814 2 1 1 271 2L 1981473 1981491 AGTACGTGATCTTCAAGGA 57 1981784 1981802 GATCTTGTTGCCGAAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12698 FBgn0030721 FBtr0074139 3 1 1 93 X 15901456 15901544 CACATGAAGGTCAATATGGTG 59 15901599 15901617 CTGTGTCATCATCCAGGAG 59 NA Drosophila melanogaster 50 CG1537 FBgn0030260 FBtr0073394 2 1 1 157 X 10956477 10956710 CGTAACATTAACCATTGCTGG 59 10956278 10956296 TAGATGAACTCGCAAGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3097 FBgn0029804 FBtr0070836 1 1 1 108 X 5660892 5661115 AGTGCTTAGAATCTCGGAG 58 5660802 5660820 GTACAGGATGAAGGTCACC 59 NA Drosophila melanogaster 50 CG3249 FBgn0029764 FBtr0070795,FBtr0070796,FBtr0070794 1 3 3 102 X 5309430 5309448 ACTTACCAAAGGCATTGTC 57 5309066 5309367 GATTACATTATTGGGACCTAGG 57 NA Drosophila melanogaster 50 CG15375 FBgn0029694 FBtr0070637 3 1 1 286 X 3995737 3995831 TCTTCATTTCGTCAAGGTC 57 3996282 3996300 ATATAAGGCGGTACCTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 VhaAC39 FBgn0028665 FBtr0070611 2 1 1 114 X 3775908 3775926 CCTTTACAAGGCCTACCTG 59 3776094 3776112 GATAATTGCACGACGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 sphinx FBgn0083990 FBtr0111046,FBtr0111045 3 2 3 60 4 996137 996158 CACTTTAAGATTCCTGTAGTGG 58 996177 996197 CTTACTTACAGATGGAGAAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pan FBgn0085432 FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156 2 8 10 77 4 115560 115581 GAGATAACTATGGTTACGTGTC 58 115618 120040 TATTATTGCCTCCCGAATCC 59 NA DesignRelaxed Drosophila melanogaster 50 dmrt99B FBgn0039683 FBtr0085454 2 1 1 122 3R 25518815 25518833 CCAAATGCACTCTAATCGC 59 25519205 25519223 CAGGAACCGAAGTGTAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31159 FBgn0051159 FBtr0084270 1 1 1 80 3R 18440610 18440685 CTGCTTTGGAACAGAAGTG 58 18440726 18440747 ATCCTAACTAGGGTTAATGGAC 58 NA Drosophila melanogaster 50 CG17565 FBgn0038424 FBtr0083286 3 1 1 170 3R 12259203 12259283 CAGTTTCTAAGCAACTGCC 59 12259417 12259435 TACACTGAACAGGAACTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG32473 FBgn0052473 FBtr0082743,FBtr0082744,FBtr0082742 3 3 3 158 3R 9136816 9136899 GGAATTTGACGTGAAGCAG 59 9137021 9137039 TTGAAGGACGATGCTTCAG 59 NA Drosophila melanogaster 50 CG12163 FBgn0037303 FBtr0078823,FBtr0078822 1 2 2 60 3R 1064106 1064183 GCTTACAAGGCCATTAAGG 58 1064064 1064082 CCTTGTATGGGTACTCAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG14646 FBgn0037241 FBtr0078919 1 1 1 60 3R 216780 216853 GGCAGAAACTTACAACATATCG 59 216873 216892 AATGCTTATCATCTGCAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14639 FBgn0037224 FBtr0078975 2 1 1 60 3R 72794 72871 CGTTGTTCTAATGTGCCTG 59 72894 72913 TTGGTACTTGTATCCCTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32182 FBgn0052182 FBtr0075188 1 1 1 60 3L 17751381 17751399 CCAACTGAGACTGATGGAG 59 17751422 17751441 CCACAATTGCAGTATCAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32141 FBgn0052141 FBtr0075735 2 1 1 60 3L 14196660 14196680 GAAAGATCACCAACTTACCTG 58 14196698 14196720 CAAGTAAGAGGAGTACGATAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mtTFB1 FBgn0036197 FBtr0076112,FBtr0114551,FBtr0114552 2 3 3 60 3L 11702737 11702756 ACGGACAAGATAGTCAAGTC 59 11702778 11702797 CCACCTCAAGAACTAAATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 orb2 FBgn0035938 FBtr0076561 1 1 4 110 3L 8942849 8947041 TTTGTTATTGGCATCTAGGG 57 8942758 8942776 CTTTGGTAACTTGAGCGAG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 zip FBgn0005634 FBtr0072398,FBtr0072399,FBtr0100467,FBtr0100466 1 4 4 80 2R 20879487 20879567 CAAATGGATAAGCTGAATAGCC 59 20879428 20879447 CTTCTCCTTCTGCAATTCCT 59 NA Drosophila melanogaster 50 CG30194 FBgn0050194 FBtr0071954,FBtr0071955 3 2 3 96 2R 18946731 18946749 TATGCCGCATTGATATCCA 58 18946808 18946885 CAAAGAGGGCTACAGTATCC 59 NA Drosophila melanogaster 50 CG5742 FBgn0034304 FBtr0086780 3 1 1 62 2R 14037960 14037978 CTGCGATACGAGGAATCAG 59 14037916 14037936 CAGTATATCGGTCGACATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34363 FBgn0085392 FBtr0112584,FBtr0112585 2 2 2 80 2R 6226463 6226545 CTGGAGAACATGTTTAATGACC 59 6226404 6226423 TGATAGAATGGTCAACTGCT 58 NA Drosophila melanogaster 50 Pka-R2 FBgn0022382 FBtr0088438,FBtr0112902,FBtr0112901,FBtr0088437,FBtr0088439 3 5 5 72 2R 5886301 5886942 ATGTTATTGAATCTGGCGTC 58 5886248 5886266 AGTCCAGTGTGATTGTAGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG33199 FBgn0053199 FBtr0088688 2 1 1 73 2R 4836300 4836318 GTTCAGCCTTAAGCAACTG 59 4836245 4836265 CTATAGCTCCATTCTAGAGCT 57 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13078 FBgn0032809 FBtr0081256 1 1 1 60 2L 19564929 19564948 ACTATGGTCCTAATGGTCCT 59 19564971 19564989 CAATCTTCTGGTAGAGCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 btv FBgn0023096 FBtr0110948 1 1 1 80 2L 17969773 17969850 TACTATGGCAAGGAGAAGG 58 17969711 17969729 TTCGTCATGGGTTAGACAG 58 NA Drosophila melanogaster 50 CG9463 FBgn0032066 FBtr0079744 3 1 1 121 2L 8767714 8767734 CAATTTGGCTGGCTATTATCG 59 8767556 8767634 GCTCATTGACATACTTGATCAG 59 NA Drosophila melanogaster 50 Cyp4ac3 FBgn0031695 FBtr0079068 2 1 1 238 2L 5268725 5268745 GGATCTACTCAATTTAACGCC 58 5268997 5269065 GCCATTTCTGGTCTATGCT 59 NA DesignRelaxed Drosophila melanogaster 50 slp2 FBgn0004567 FBtr0077500 3 1 1 60 2L 3838115 3838136 ACAATTTCTTACCTATCCTCCG 59 3838157 3838175 ATAACGCTGATACATGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31690 FBgn0051690 FBtr0077704,FBtr0077703 2 2 2 285 2L 2712125 2718300 TCACTTTAATCTGGGCGTG 59 2718549 2718567 CTGAAGTCTTCCATCGGAG 59 NA DesignRelaxed Drosophila melanogaster 50 Tfb4 FBgn0031309 FBtr0077985 3 1 1 106 2L 1150062 1150141 ACATATCAAGGCTCCAGAG 58 1149974 1149992 CATGAACGTCATGTACTGC 58 NA Drosophila melanogaster 50 tRNA:CR31578 FBgn0051578 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30155 FBgn0050155 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:K2:42Eb FBgn0011893 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG13235 FBgn0040766 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CR32658 FBgn0040859 FBtr0073628,FBtr0073626,FBtr0073627 3 3 3 142 X 11985664 11985685 GCTTAGTCTAGGAATCAATTGC 59 11985851 11985869 GTTGGCCAAACATCAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210 1 5 8 85 X 21247686 21250626 ACATGACGCTTATGAAATGG 58 21250674 21250692 AAAGTGGCCATAGAAGGTC 59 NA Drosophila melanogaster 50 l(1)G0269 FBgn0029067 FBtr0077226 1 1 1 76 X 21192936 21192954 ATGTGGACTACTTCCTGGA 59 21192793 21192811 TCCGTAAATCTCCATGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 shakB FBgn0085387 FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572 2 5 5 81 X 20644231 20644249 ACGCTAATATACAGGGTGG 58 20643790 20644186 GACGCACTAACCTAAATCG 58 NA Drosophila melanogaster 50 CG33496 FBgn0053496 FBtr0089609 2 1 1 63 X 20081124 20081142 TTCGAGCAGATCTACAACC 59 20080687 20080705 TGTAGTCACCAGAGGTCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14207 FBgn0031037 FBtr0074733,FBtr0074734 2 2 2 95 X 19504475 19504493 ATTAGCTCACCCTTGATCC 58 19504616 19504635 TTTCACAACAATTTCCTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 Tao-1 FBgn0031030 FBtr0074773,FBtr0074771,FBtr0074774,FBtr0074772 2 4 4 89 X 19465921 19466011 GCTCGAGAATAAGATGGAC 57 19465850 19465869 TCTTTAGTATGCTTCTCGTG 57 NA Drosophila melanogaster 50 Grip84 FBgn0026430 FBtr0074777 1 1 3 194 X 19455819 19456733 TTCATCCAGATTGAGACCC 58 19455643 19455662 CATTTGATCGGTGTAGAAGG 58 NA Drosophila melanogaster 50 CG15042 FBgn0030937 FBtr0074619 3 1 1 60 X 18421127 18421146 ACATAAACATCCTAGAGGGC 58 18421086 18421107 TTGATATCGCTTCGTAGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Wnt5 FBgn0010194 FBtr0074623 2 1 1 60 X 18396573 18396593 CTTACATCCAAGATAGACGAG 57 18396533 18396552 TCTCCTGTTTGATCTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GalNAc-T2 FBgn0030930 FBtr0074624,FBtr0074625 1 2 2 173 X 18392114 18392132 GATCATCCTGGTGGATGAC 59 18391517 18391535 AAGAAGACGATCACCTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8611 FBgn0027602 FBtr0074440,FBtr0074439 1 2 2 130 X 17313897 17313976 TTCTTCAAACTACATGGCTC 57 17313786 17313804 TTTATGTCGGGAACATCGA 58 NA Drosophila melanogaster 50 wus FBgn0030805 FBtr0074418 2 1 1 60 X 16833834 16833853 GTCATTGCCTATCTATGCTG 58 16833793 16833811 GCAAGTACAGATGATGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32570 FBgn0052570 FBtr0074326 2 1 1 79 X 16629697 16629716 TATCAGGAGGACAACAATGC 59 16629758 16629776 TAGTTGTAGCTACCATCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9634 FBgn0027528 FBtr0074359 1 1 1 84 X 16638924 16638944 GCCAATCATGAGTACTTTGTG 59 16638788 16638881 GATTCAGTTCATTGAGTTCCTG 59 NA Drosophila melanogaster 50 CG9723 FBgn0030768 FBtr0074376 2 1 1 63 X 16548651 16548669 GATTATTCCCAGTACGGTG 57 16548606 16548624 ATTGCTTGTCCTTGTAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5877 FBgn0030625 FBtr0074002,FBtr0074001 2 2 2 60 X 15189567 15189588 GCAGAATTGCATATACATAGGG 59 15189609 15189627 ACAGTGAAACGAGTATGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9517 FBgn0030591 FBtr0073982 1 1 2 133 X 14771781 14771799 GAAAGAGAACAACAGTCGG 58 14771334 14771581 ATACTGACGACGTATGACG 58 NA Drosophila melanogaster 50 CG9400 FBgn0030562 FBtr0112982 2 1 2 62 X 14182787 14182808 GCTTCATCGATAGATATCATCC 58 14182592 14182611 CAAGTAATGTGAAGTGACCA 57 NA DesignNoJunction Drosophila melanogaster 50 CG2750 FBgn0030376 FBtr0073629 3 1 1 83 X 12001673 12001817 GTTTAGGGATATGACCTATGAGAC 59 12001859 12001877 GTTTCATACGCTTGACGAC 59 NA Drosophila melanogaster 50 CG11356 FBgn0030375 FBtr0073635 3 1 1 96 X 11997541 11997561 CTGTGGAAGCATTATTATGCC 59 11997465 11997483 TTAGCAGTGAGAATGTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15738 FBgn0030352 FBtr0073572 1 1 1 97 X 11786400 11786418 ATTCAATGTGGAGGTCTCC 58 11786805 11786823 ACTTGTCTATGGAGTCGTG 58 NA DesignNoJunction Drosophila melanogaster 50 rho-4 FBgn0030318 FBtr0073518 1 1 3 80 X 11494346 11498350 AGATATTTGACAAGCACGAC 58 11498393 11498411 AATAGCCATCCGAGATCAG 58 NA Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489 3 8 12 99 X 11291936 11292011 ATATAACCAGAGAACCGCG 59 11292074 11292092 GACACATAGATACCCTGGC 59 NA Drosophila melanogaster 50 Ant2 FBgn0025111 FBtr0073426,FBtr0073425 1 2 2 99 X 10674034 10674052 TTATCCACTGGACTTTGCC 59 10673656 10673677 GATCACCTTCATTAGACAATCG 58 NA DesignNoJunction Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274 3 10 10 166 X 8768356 8768374 GAGGATGAGAACGAGAACG 59 8768131 8768227 TCTTGTTTCAGAGCCTTGAG 59 NA Drosophila melanogaster 50 Trxr-1 FBgn0020653 FBtr0071168,FBtr0071167,FBtr0071169 3 3 3 61 X 8140427 8140445 ACATCAAGTCCGTCAACTG 59 8140468 8140558 GATGTACTCCACTTTCTTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 sdt FBgn0003349 FBtr0111034,FBtr0100375,FBtr0089974,FBtr0089978,FBtr0100376,FBtr0089975 3 6 7 181 X 8131033 8131051 ATTCCTAGTCAGTCGTTCC 58 8131195 8131276 TATAAAGGATATCCCGCCTC 58 NA Drosophila melanogaster 50 CG2258 FBgn0029997 FBtr0071109,FBtr0071111,FBtr0071110 2 3 3 80 X 7991568 7991656 CATTGGAGATTGTCGAGGA 59 7991506 7991527 TAATAGTGAGCATCTTGACCAG 59 NA Drosophila melanogaster 50 RpS14a FBgn0004403 FBtr0071094 3 1 2 138 X 7828191 7828209 TCCATGTCACTGATCTGTC 58 7828370 7828388 AGTGTCTTGCACTTCTCAG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG10932 FBgn0029969 FBtr0071143 1 1 1 62 X 7781997 7782015 AGATCGTCATCTCAGAGGA 59 7781953 7781971 CCAACTGTCCAAACTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1402 FBgn0029962 FBtr0071085 3 1 1 80 X 7732874 7733758 CCAAACAGGAGTTGTACCA 59 7733801 7733820 GCGCATTATTACCTAGTGGA 59 NA Drosophila melanogaster 50 Hira FBgn0022786 FBtr0071070 3 1 1 119 X 7619070 7619156 GAATATCACAGTTCGTGCC 58 7619239 7619257 ATTTGCACTCCTTTAGCAG 58 NA Drosophila melanogaster 50 CBP FBgn0026144 FBtr0071053,FBtr0071052 1 2 2 117 X 7235527 7235615 CTTGTTTAAGGCTGTGGAC 58 7235696 7235714 TATCACAGCGAATGAAACG 58 NA Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 2 12 15 239 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978621 6978640 AATTGATCTACCTCTGTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 1 12 15 238 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978622 6978640 ATTGATCTACCTCTGTGCA 57 NA DesignRelaxed Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 2 12 15 238 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978622 6978640 ATTGATCTACCTCTGTGCA 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG4078 FBgn0029798 FBtr0070807 2 1 1 81 X 5644425 5644506 GAAGCGAATATGAAACTACCG 59 5644548 5644567 CTAGTGGTTCATCCTCTGTC 59 NA Drosophila melanogaster 50 CG34435 FBgn0085464 FBtr0112736 2 1 1 79 X 5508351 5508369 GGAGCTAATGAGAATGCTG 57 5508290 5508308 CCTGGTCACATTCATTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SK FBgn0029761 FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070769,FBtr0070766 2 5 7 95 X 5292153 5292440 ACTGACATGGCTAAGACAC 59 5292498 5292517 CTCTAGGTTGGTTAAACGCT 59 NA Drosophila melanogaster 50 CG3323 FBgn0029750 FBtr0070758 1 1 1 60 X 5198942 5198960 TGAATACACCACATGACAG 57 5198900 5198919 ATTAGCTTATCATCACTGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2662 FBgn0024993 FBtr0070478 3 1 1 63 X 2594618 2594636 GATGTGATGAACGGATTCG 58 2594663 2594681 ACATCACGAGTTCGAAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trol FBgn0001402 FBtr0070451 1 1 7 104 X 2417515 2417533 TTGGAAGTAAGTTGCAGCA 59 2416446 2417451 CCTCGATATCACTAGATTCAGTG 59 NA Drosophila melanogaster 50 ptr FBgn0003159 FBtr0070404,FBtr0070403,FBtr0070402 2 3 3 99 X 2243040 2243058 GAGTTCCACTGAGTAAGCT 58 2242892 2242910 TACACCTGACTAGCATCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG4045 FBgn0025629 FBtr0070331 1 1 1 68 X 1969241 1969259 CCTATATCCTCAGGAAGGG 57 1969124 1969142 CTATCCACTTGTGCAAGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Adar FBgn0026086 FBtr0070299,FBtr0100557,FBtr0070300 3 3 3 60 X 1677571 1677591 AAAGTAACCACTGACTATGGG 59 1677613 1677698 GCTTTGCGATCTGATAGTC 58 NA DesignRelaxed Drosophila melanogaster 50 DAAM FBgn0025641 FBtr0070241,FBtr0070240,FBtr0070239 3 3 3 82 X 1187405 1187424 TTCTCATGCTCGGTATACAG 58 1187282 1187360 AAAGAAGTCCAAATGCCTG 58 NA Drosophila melanogaster 50 TRAM FBgn0040340 FBtr0070168,FBtr0070167,FBtr0070169 2 3 3 60 X 830604 830622 AAGCCATACACCTACATCG 59 830644 830664 TCAGCGTGTAGAAGAATATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14635 FBgn0029535 FBtr0070142 1 1 1 86 X 738956 738974 GAATATCGCTGACCTGGAC 59 739024 739042 TGTGGCATAGAAAGATCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fz3 FBgn0027343 FBtr0112928,FBtr0070138 1 2 2 60 X 676920 676939 AGCATTTGTATACGAGTGGG 59 676960 676980 GCATATAGAGGAGTGATTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 svr FBgn0004648 FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070086,FBtr0070082,FBtr0070085 2 7 7 108 X 396239 396323 CTATGACAACTCCTTGGCT 58 396394 396413 CATAATCGGATGGTTGTCAG 58 NA Drosophila melanogaster 50 ewg FBgn0005427 FBtr0100581,FBtr0100579 1 2 8 124 X 165180 165198 ATGTACCAGTCGGTAATGG 58 163391 163473 ATTCTCCACAGATCAAGGG 58 NA Drosophila melanogaster 50 ewg FBgn0005427 FBtr0100581,FBtr0100580 3 2 8 84 X 165638 167225 CAACAGCAATTACACCACG 59 165572 165592 TGGATTATTTGGGTCTACCTG 59 NA Drosophila melanogaster 50 CG41561 FBgn0085692 FBtr0114141 1 1 1 60 U 4051903 4051921 CGATTCGTAAGACCCTCTG 59 4051861 4051879 ATTTGCATAGATCCCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41529 FBgn0085671 FBtr0114118,FBtr0114119 3 2 2 65 U 3832285 3832303 CAATTGGTTTGACCTGCTC 59 3832331 3832350 AGCTTCTGGTTGAGATTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11155 FBgn0039927 FBtr0089195 3 1 3 200 4 1152574 1154508 TTAATCCGAAGGCAACCTC 59 1154672 1154690 ATGTCATTGTCGATCCACC 59 NA Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211 2 4 7 182 4 1080191 1080209 CAACACAACCTCTCAACAG 58 1079960 1080047 TATGAGAAGAGTCCATTGCAG 59 NA Drosophila melanogaster 50 ATPsyn-beta FBgn0010217 FBtr0089186 1 1 2 95 4 1053793 1053811 ATCCGAATTCCAGTTGGTG 59 1053921 1053941 GGTCTTGTCTGTATCAATTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450 3 8 8 168 4 157780 157853 TCGAGCAACCTTAAGACAC 59 158042 158061 CATAAACCAATTGCTTGCAG 58 NA DesignRelaxed Drosophila melanogaster 50 Hsromega FBgn0001234 FBtr0084059,FBtr0084057,FBtr0084058 3 3 3 60 3R 17123733 17123754 GATTCTGTCAGATTGATTGTGC 59 17123775 17123793 CAGAGAAGTCGATACACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsromega FBgn0001234 FBtr0084059,FBtr0084057,FBtr0084058 3 3 3 60 3R 17123733 17123754 GATTCTGTCAGATTGATTGTGC 59 17123775 17123793 CAGAGAAGTCGATACACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2135 FBgn0039874 FBtr0085858 2 1 1 153 3R 27595742 27595761 CTCTTGGTATCAGAACTCGG 59 27595554 27595626 AATAAAGGCGGGAAGTGAG 59 NA Drosophila melanogaster 50 5-HT7 FBgn0004573 FBtr0085746 3 1 1 60 3R 26795822 26795840 GCTCTCGTCTCTATTCCTC 58 26795780 26795801 GTAGATAATAGGGTTCAGCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34155 FBgn0083991 FBtr0111047 2 1 1 90 3R 26382397 26382415 TAATCGTCAACGTTTACGC 58 26382325 26382344 AGCTTGTCTCCTTTCTAGAC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG15534 FBgn0039769 FBtr0085644 2 1 1 76 3R 26258989 26259007 ATGTCTTGGAAACCACGAG 59 26259680 26259698 AGTCAACTCTAAGGGAGCT 59 NA DesignNoJunction Drosophila melanogaster 50 janA FBgn0001280 FBtr0085595,FBtr0085597,FBtr0085596 2 3 3 86 3R 25864788 25864807 TTGAAGGTCTACGGATACTC 58 25864615 25864633 GTAGTCCGGGTATTTGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 kay FBgn0001297 FBtr0099988,FBtr0099991,FBtr0099989,FBtr0099990 1 4 4 173 3R 25617430 25617514 ACGACCGATACTTCAAGTG 59 25617651 25617669 CGTATTTGAGGTATTCGCG 58 NA Drosophila melanogaster 50 kay FBgn0001297 FBtr0099988,FBtr0099991,FBtr0099989,FBtr0099990 2 4 4 174 3R 25617430 25617514 ACGACCGATACTTCAAGTG 59 25617652 25617670 GCGTATTTGAGGTATTCGC 59 NA Drosophila melanogaster 50 Kul FBgn0039688 FBtr0085460 3 1 1 88 3R 25556242 25556260 TACACAGTAGCCTTAGCTG 58 25556641 25556659 TTAAGCTTCAGATTCGACC 57 NA DesignNoJunction Drosophila melanogaster 50 CG2010 FBgn0039667 FBtr0085428,FBtr0085427 2 2 2 119 3R 25323843 25323861 TAAGTTTATACAGCGCCAG 57 25323944 25324030 ACAATGATCTTGCAGTTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 3 8 8 148 3R 24962000 24962021 GCACAATCATACGTATTTCAGG 59 24962129 24962212 AGTAGGGCTTATCATTGGTG 59 NA Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 1 7 8 81 3R 24639657 24639675 TACTGCTACGGATATTGGC 58 24639719 24640879 GCTCAAACACCTTATAGCAG 58 NA Drosophila melanogaster 50 CG9989 FBgn0039593 FBtr0085307 3 1 1 101 3R 24496949 24497017 TACGTAAACACCGTTCCAC 59 24497082 24497100 CAAACAAGCTTGTGTTGCT 59 NA Drosophila melanogaster 50 larp FBgn0040108 FBtr0089682,FBtr0089680,FBtr0089681 3 3 3 123 3R 24146994 24147108 CGATTATGAAACAGGTCAACTG 59 24146892 24146911 GTTCTTGAAGCTCTTCAGGT 59 NA Drosophila melanogaster 50 CG34437 FBgn0085466 FBtr0112738 1 1 1 69 3R 24109732 24109750 TAACAACTGCTAGTTGCGT 59 24109842 24109862 GGTATATTGTCAAACCTTCCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4815 FBgn0039568 FBtr0085260 3 1 1 62 3R 23815808 23815826 GATAAACTCATTGCAGCCG 59 23815764 23815782 TTTCTTCCTGGACTCATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mtl FBgn0039532 FBtr0085191,FBtr0085192,FBtr0085193 2 3 3 60 3R 23463678 23463696 AATCTCCTACACGACAGAC 58 23463720 23463807 GTAGTTGTCGAAGACTGTG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 raps FBgn0040080 FBtr0085189 1 1 1 61 3R 23409075 23409093 ACGCCTACTTCTACCTAGG 59 23409118 23409136 CGTAAGATCGTGTTTGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31064 FBgn0051064 FBtr0085125,FBtr0085126,FBtr0085124 1 3 3 101 3R 23059041 23059059 CTATCGGATTACCTGCAGG 59 23058896 23058977 TATCACAACGATCTCATCGC 59 NA Drosophila melanogaster 50 gro FBgn0001139 FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963 3 5 5 104 3R 21870081 21870172 CGCCATTATGTTATGTACTACG 59 21870236 21870255 AAGTAGCTGGTTGATCAGTG 59 NA Drosophila melanogaster 50 Mst57Db FBgn0011669 FBtr0084915 2 1 1 67 3R 21656517 21656535 TCCACATCAATAGTCCCAG 58 21656468 21656487 TATTGAATTCTGTGCCTGCA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11790 FBgn0039265 FBtr0084760,FBtr0084761 3 2 2 90 3R 20874455 20874473 CTGAGAAGGGATATACCCA 57 20875008 20875026 AAATAACTTTGCAGTGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11089 FBgn0039241 FBtr0084710 1 1 1 151 3R 20704834 20704910 CAAGATTGCTCTTCTCAGTG 58 20705024 20705042 TAATCTCCGAGACATCCCT 59 NA Drosophila melanogaster 50 CG6980 FBgn0039228 FBtr0084698 3 1 1 82 3R 20633975 20634065 GTGCTACATCAAGCTACAG 57 20634111 20634129 GGAGATTACTCTCCTGCAG 58 NA Drosophila melanogaster 50 tld FBgn0003719 FBtr0084691 1 1 1 80 3R 20577194 20577264 GAGATTCGAGGTGGTATGTG 59 20577304 20577325 TAGTCCATAGGATAGTTGGGAG 59 NA Drosophila melanogaster 50 CG33340 FBgn0053340 FBtr0084611 2 1 1 78 3R 20189259 20189278 TATCTACTACGTCGAGTCGG 59 20189319 20189337 CTTAATCTGGATGGGAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6454 FBgn0039187 FBtr0084608,FBtr0084609 2 2 2 81 3R 20175505 20175618 TCAACAAGTTCCCTCAGTG 59 20175663 20175681 TCATTCACCACCAATTCCT 58 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 1 5 6 80 3R 20045369 20045388 ATGAACATCTACAACGAACC 57 20025660 20045326 TGGATTCACGGTAAATGAC 57 NA Drosophila melanogaster 50 spas FBgn0039141 FBtr0084533,FBtr0084534 3 2 2 69 3R 19866502 19866520 AATGGTCATTCTACCCTCC 58 19866611 19866629 CAATAAACCCTTAGCCGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG4434 FBgn0039071 FBtr0084382 1 1 1 80 3R 19114369 19114388 CCGAGCTTATTATCGAACTG 58 19114247 19114328 GACATATGTTCGGTAGTTGAC 58 NA Drosophila melanogaster 50 EloA FBgn0039066 FBtr0084375,FBtr0084374 1 2 2 64 3R 19079219 19079237 ATGAGTCAGAAGCTCTAGC 58 19079323 19079341 ACCCGAATAGATCTTGGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4704 FBgn0039029 FBtr0084314 3 1 1 60 3R 18670596 18670616 AAGTCTCCATGATGAATTCCC 59 18670556 18670576 GTCTTATTGAGTCGATGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4813 FBgn0039013 FBtr0084326 3 1 1 72 3R 18551262 18551280 CACATCTATGGTCCTACGC 59 18551208 18551226 CATTTCCCTCTGTGTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wge FBgn0051151 FBtr0110835,FBtr0084329,FBtr0084328 3 3 3 86 3R 18539557 18539638 CAAGGATACGATCCTCGAG 59 18539489 18539507 TACTGCTGACTCCAGTAGG 59 NA Drosophila melanogaster 50 CG31156 FBgn0051156 FBtr0084277 3 1 2 102 3R 18435193 18436452 TGTGGAAAGTATTGTCGGAG 59 18435110 18435128 GAGATTAGGCTGGGATGAG 58 NA Drosophila melanogaster 50 CG7907 FBgn0038887 FBtr0113262,FBtr0113261 2 2 2 106 3R 17231514 17231532 CAAGATCAACGTGTTCACC 59 17231600 17231709 CAACCAAATCCTTGAAGACAG 59 NA Drosophila melanogaster 50 CG3301 FBgn0038878 FBtr0084101 2 1 2 92 3R 17100159 17100238 GCCTGTTGGAAGTAATACG 58 17100085 17100103 AATATGATATTGCACCGGC 58 NA InUTR Drosophila melanogaster 50 Rab1 FBgn0016700 FBtr0084104,FBtr0084105 2 2 2 111 3R 17093374 17093393 TGCCGATGACACATATACAG 59 17093164 17093238 AGCAGTATCCCAGATTTGC 59 NA Drosophila melanogaster 50 Mvl FBgn0011672 FBtr0089521,FBtr0089522 1 2 3 184 3R 16881620 16881699 TTTGTTAATGGACTGGGCA 59 16881391 16881409 GCCATGTGTATCACAAGGT 59 NA Drosophila melanogaster 50 CG4465 FBgn0038750 FBtr0083851 2 1 1 66 3R 15743360 15743379 TATCTCCTCAAACTCCACAC 58 15743313 15743331 GTGATGACATCGTCATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5629 FBgn0027595 FBtr0083752,FBtr0083753 2 2 2 184 3R 14967736 14967823 AATACAAGCACAAGCTGGT 59 14967333 14967351 AGCGTTACTGATGAACTCG 59 NA Drosophila melanogaster 50 fru FBgn0004652 FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642 2 13 13 132 3R 14261181 14261201 ATGTCAGATACTCAGAGATGC 59 14260762 14260781 TTGTTATCTGTGAGACCACG 59 NA DesignNoJunction Drosophila melanogaster 50 Ssdp FBgn0011481 FBtr0083612,FBtr0083611,FBtr0083613 1 3 3 65 3R 14020957 14020975 AAGATCAAGGAGAGCATGC 59 14020910 14020928 GTAGTCCGGATGATCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cdm FBgn0038574 FBtr0083619 1 1 1 173 3R 14006605 14006624 AGGAGATCGATGTCCTAGAG 59 14006332 14006409 AGAACATAACAATGGCCGT 59 NA Drosophila melanogaster 50 CG7785 FBgn0038564 FBtr0083539 2 1 1 85 3R 13848386 13848461 TCATTTATGTGGGCAATGG 58 13848510 13848528 TAGAATGCGTTCGAATCCT 58 NA Drosophila melanogaster 50 CG14324 FBgn0038527 FBtr0083500 1 1 1 60 3R 13444216 13444234 CCCAACCAGTAGTTATTCC 57 13444174 13444192 AATCCACCTAGACCTAGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Surf4 FBgn0019925 FBtr0083118,FBtr0083117 2 2 2 81 3R 11170643 11170662 ATTTAAGGTCGACATAGCGG 59 11170516 11170534 GAAGTCCCACAGAATGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 ear FBgn0026441 FBtr0083082 1 1 1 101 3R 11147302 11147320 GAATCCTTTCCGAAACCCA 59 11147454 11147474 GCGAAAGTAAATCTCAACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Rrp6 FBgn0038269 FBtr0113235 2 1 1 108 3R 10711364 10711382 TTATGGAAGACCTGACCCA 59 10711162 10711180 ATCTCAAACTGCTCTTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 pr-set7 FBgn0011474 FBtr0082929,FBtr0082928,FBtr0082930 3 3 3 97 3R 10142502 10142520 CGTTTGATGAAGGTCACTC 58 10142581 10142670 AAGGGAACTCCTATTGTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9616 FBgn0038214 FBtr0082896 2 1 1 66 3R 10070972 10070991 ATTCGAAATGCAAGGAAAGC 59 10070870 10070891 CTCATTCTTATTGGGATACGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14372 FBgn0038156 FBtr0100458 3 1 1 198 3R 9283199 9283217 AATGTCACCTGGTACTTGG 59 9283379 9283465 TCGGTTTCAGATTCACGTC 59 NA Drosophila melanogaster 50 CG33098 FBgn0053098 FBtr0082579,FBtr0082578 1 2 3 152 3R 8213837 8213855 ACTATGAAGCCTTCGTTCG 59 8214033 8214051 TGTCACCATAGTTGGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 GstD1 FBgn0001149 FBtr0100410,FBtr0082607 2 2 2 85 3R 8193741 8193759 AATGTGAACAGGTGGTACG 59 8193674 8193692 TACTTCTTGAACTCCAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 3 15 15 123 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811939 7812029 GGTTCTTCAGGATGTTGGA 59 NA Drosophila melanogaster 50 CG12213 FBgn0037968 FBtr0113223,FBtr0082509,FBtr0082510 1 3 3 129 3R 7792547 7792565 TTCATAAGGACAAGGCCAG 59 7792379 7792397 CAGTTGGTCTTGAATTCCG 58 NA DesignNoJunction Drosophila melanogaster 50 l(3)neo38 FBgn0086910 FBtr0082533,FBtr0110877,FBtr0110876 1 3 3 120 3R 7596967 7596985 CTCCATACCGTACTCACAG 58 7595815 7596883 CTGGTTGAGGACTTCTTCC 59 NA Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082457 2 1 6 71 3R 7417224 7417243 CCAAGAAGCTAAAGATCCGA 59 7416979 7416997 AATACTCGTTGGCTACGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17734 FBgn0037890 FBtr0082360 3 1 2 116 3R 7068559 7068577 GAGTACCTGTTCGACAAGG 59 7068201 7068219 AAGTGATCTAGCCGATGTC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG6608 FBgn0037852 FBtr0082333,FBtr0082334 3 2 2 60 3R 6705785 6705803 CACACTCCTTAAGTCAAGC 58 6705743 6705764 CTTGAGCTTATCGTAAATGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14683 FBgn0037822 FBtr0100412,FBtr0082267 1 2 2 60 3R 6524092 6524111 TGTTGGCTAATGTTGAAGAG 58 6524133 6524152 TTCTCTTCACCATACATCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6465 FBgn0037818 FBtr0082323 3 1 1 83 3R 6501868 6501886 CTCCCTTGCTAATGGTCTG 59 6501746 6501821 ACCATTTGTGGAGGTTAGC 59 NA Drosophila melanogaster 50 CG9471 FBgn0037749 FBtr0082160,FBtr0113211 3 2 2 91 3R 5596934 5596952 GAAATTGCTATACCGCAGC 59 5596861 5596879 CATCCTCGTAGTTGGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8176 FBgn0037702 FBtr0113208,FBtr0113207 2 2 4 102 3R 5348606 5349271 CAATCAAGATCAGACACAACAG 59 5349333 5349352 GTTCAATTGCTTCTTCCCAG 59 NA Drosophila melanogaster 50 CG8176 FBgn0037702 FBtr0113208,FBtr0113207 1 2 4 100 3R 5348606 5349271 CAATCAAGATCAGACACAACAG 59 5349332 5349350 TCAATTGCTTCTTCCCAGG 59 NA Drosophila melanogaster 50 CG12951 FBgn0037677 FBtr0082058 1 1 1 114 3R 5155293 5155375 GGGTCTCAATGATACTTATGG 57 5155199 5155217 ATATTTGGGATCCGTTTGG 57 NA Drosophila melanogaster 50 Rel FBgn0014018 FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338 2 4 4 60 3R 4870435 4870454 TGAAGAATGTGTATCCGGAG 59 4870394 4870414 TTGACCTTACATGGAATCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8136 FBgn0037616 FBtr0081909,FBtr0081910,FBtr0081908 3 3 3 65 3R 4547413 4547431 GAGACATTCGACTCCTTGG 59 4547460 4547478 CACCTGACTTCGGTTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18193 FBgn0037579 FBtr0081839 1 1 1 67 3R 4169721 4169739 TTGAGGAAGCAATTTCAGG 57 4169770 4169788 ATGTTATCCATACTGCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11671 FBgn0037562 FBtr0081829 1 1 1 60 3R 4114152 4114171 TACTAAATAACCGGCATGTG 57 4114191 4114212 TCAGTGATATAGGACTTGACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Antp FBgn0000095 FBtr0081648,FBtr0081652,FBtr0081651,FBtr0081649,FBtr0081650,FBtr0081647,FBtr0081656,FBtr0081654,FBtr0081653,FBtr0081655 2 10 11 256 3R 2734436 2734454 CAGAACCATCACAACATGG 58 2724212 2724230 AGCTCTAGAGTCTGGTACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2185 FBgn0037358 FBtr0078732 3 1 1 63 3R 1479381 1479399 GAGGATCTGATGCGTATCC 59 1479336 1479354 AGGAATGAACTATCCGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2519 FBgn0037336 FBtr0078761,FBtr0078762 3 2 2 84 3R 1369007 1369095 AGATACGGGCTTTATTGGA 58 1368941 1368959 GATCGTACCTAGGAATCCT 57 NA Drosophila melanogaster 50 CG12000 FBgn0037314 FBtr0078805,FBtr0078806 2 2 2 76 3R 1183098 1183116 CAAGGACAGGGACTTTACC 59 1182969 1182987 TATCGCGGTAGTAAAGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199 3 14 15 133 3R 1100031 1100465 GAGCACAACGTATTTGGTG 59 1099916 1099934 TACATATTCTCGCCAGTCC 58 NA Drosophila melanogaster 50 laf FBgn0020280 FBtr0078852 1 1 1 66 3R 702550 702568 AGGTCTCCAGTAAGGAAGG 59 702425 702443 ACAAGCTCTTGCTTATCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG31526 FBgn0051526 FBtr0078929,FBtr0111213 3 2 2 189 3R 359275 359293 AATGCATCTTCCCTTAGCC 59 359446 359464 AATAACTACGATCGTGGCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14651 FBgn0037254 FBtr0078927 2 1 1 60 3R 307542 307562 GCAGTTTATCCTTAAGATGCC 59 307583 307602 TTCCTTGAGGTTGATGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32944 FBgn0052944 FBtr0110851,FBtr0078948 3 2 2 95 3R 239079 239165 AGAACCGAGTGGAATTCTC 58 239002 239020 TGTGAACTACTCGATTCGC 59 NA Drosophila melanogaster 50 growl FBgn0037245 FBtr0078922,FBtr0078921 3 2 2 105 3R 231260 231331 GTACAACTAAGTCTGAGGGC 59 231399 231417 TTCTTCTTTGAACGACGCT 59 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338 1 5 15 165 3R 110121 120861 CGTTAAAGGAGGTGATGGA 58 120990 121008 CTTATCGCGAATGTCTTGC 59 NA Drosophila melanogaster 50 slif FBgn0037203 FBtr0078555,FBtr0078556,FBtr0078557 3 3 3 86 3L 22885585 22885671 AATCTTTGCGTCCATAATGG 58 22885720 22885738 ATGGTGTATGCTAACAGGG 59 NA Drosophila melanogaster 50 mael FBgn0016034 FBtr0089631,FBtr0089633,FBtr0089632 3 3 3 118 3L 22718019 22718093 GATGTCCCATGATCTGGAG 59 22718175 22718193 TCAACGAATATTCGCATGC 58 NA Drosophila melanogaster 50 CG6838 FBgn0037182 FBtr0078540,FBtr0078539,FBtr0113186 3 3 4 64 3L 22709981 22710078 CTAACAAATCCTGCTTCGAC 58 22709936 22709954 GATGCCATAGGTAACGGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG7139 FBgn0027532 FBtr0078486 3 1 2 138 3L 22063978 22063996 GAGCCCAATACTAGTTGGT 58 22063253 22063879 CCTTCATTAACTGAATGAGCTC 59 NA Drosophila melanogaster 50 CG14573 FBgn0037125 FBtr0078433 3 1 1 166 3L 21727439 21727457 AGGATGTGGATACAGATGC 58 21727587 21727605 CAACTTGCCCAATCTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11247 FBgn0037120 FBtr0113184,FBtr0078459,FBtr0078458 1 3 3 149 3L 21718589 21718666 TATCAGTGTAGGATCTGCC 57 21718458 21718476 CATGTGGTTCTTTAGGTGC 58 NA Drosophila melanogaster 50 CG33054 FBgn0053054 FBtr0078317,FBtr0078316 3 2 2 60 3L 21190925 21190944 CTACCTAGTAACCAAGCCTC 58 21190884 21190903 AGATGCTTGTACAGATTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33285 FBgn0053285 FBtr0078325 1 1 1 60 3L 21081675 21081694 AGCTCCAAATAGATCAACTG 57 21081634 21081652 ATTAGAGACATGGGTGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12983 FBgn0037040 FBtr0114618 3 1 4 94 3L 20959003 20959088 GCCTTAATGATGAACAAGGA 57 20958928 20958946 ATGGGTACATCCTGTAGTC 57 NA Drosophila melanogaster 50 CG12983 FBgn0037040 FBtr0114616,FBtr0114618,FBtr0078332,FBtr0114617 2 4 4 60 3L 20959685 20959706 GATCTTAAGACAAGTGTAGCCT 59 20959588 20959607 TCTGAAGTTCCTTGTACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0100238,FBtr0100237,FBtr0078257 3 3 10 189 3L 20809757 20809775 CACATGTCCTACATGATGG 57 20809928 20825958 GTTTGACTTGTTCCCTCTC 57 NA InUTR Drosophila melanogaster 50 CG14086 FBgn0036860 FBtr0074994 3 1 1 104 3L 19272207 19272495 TGCGCAGAGGATAATTACC 59 19272563 19272581 GATGACCGCATAAACAGGA 59 NA Drosophila melanogaster 50 fz2 FBgn0016797 FBtr0112890,FBtr0075028 3 2 3 219 3L 19153743 19153761 AAATCAACCAGATAGCAGC 57 19139397 19139415 TTAGCTTAGTTCGGTTGTG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG3797 FBgn0036842 FBtr0075037 3 1 1 68 3L 19054864 19054883 TTCTAAACTCGCTTATGAGC 57 19054675 19054693 ATTGCTGGGAGATCAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14073 FBgn0036814 FBtr0075084,FBtr0075085 1 2 2 80 3L 18796091 18796174 TTGCTTAACAAGCTCTGTC 57 18796029 18796047 ATCTATCTTGAACTCCCGT 57 NA Drosophila melanogaster 50 CG13379 FBgn0036804 FBtr0113179 3 1 1 60 3L 18674642 18674660 GGCCAACTATCTGTACCAG 59 18674600 18674619 TGTCTCGTTAAAGATTCCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32196 FBgn0052196 FBtr0075118 1 1 1 80 3L 18452968 18453046 GATTTGGATGATCAGGAGAG 57 18452907 18452925 TGAATCAGTGTTCAACAGG 57 NA Drosophila melanogaster 50 CG6259 FBgn0036740 FBtr0075201 3 1 1 142 3L 17613943 17613961 GTCGTTCAACATGGAACAG 59 17613740 17613837 CTTGGATGTCCTCGATCTG 59 NA Drosophila melanogaster 50 Papst2 FBgn0036695 FBtr0075279 3 1 1 158 3L 17037248 17037330 ACCTTACAATATCTGTGGTCG 59 17037450 17037468 TTCGATGAGGAATTTGCGA 59 NA Drosophila melanogaster 50 CG32158 FBgn0052158 FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404 2 5 7 125 3L 16485860 16485878 TTTGACTGGGATGTGAGTG 59 16485591 16485772 AATGATTGTCGTATCCCTCC 59 NA Drosophila melanogaster 50 fax FBgn0014163 FBtr0100477,FBtr0100478,FBtr0075413,FBtr0075412 3 4 4 190 3L 16398660 16398678 ATGAAGGACAAGTGCTTCC 59 16398260 16398433 TTCTCGTTTGACTTGTCCT 58 NA DesignRelaxed Drosophila melanogaster 50 CG13035 FBgn0036628 FBtr0075414,FBtr0075415 1 2 2 96 3L 16391793 16391813 TTGGTCATATCCTGTATTCCC 58 16391125 16391735 AGGTGAAGTTCTTGTCCTG 59 NA Drosophila melanogaster 50 Zn72D FBgn0017453 FBtr0075493,FBtr0075494 1 2 2 286 3L 16104977 16105111 ATAGGACAGCTAATCGCAC 59 16104709 16104727 ATAGAATGTCTTGGTGGCG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 brm FBgn0000212 FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523 1 4 4 159 3L 15964327 15964406 GATACCATTCTAGGTCGAGG 58 15964187 15964205 GATTCTTACGCTTTCGTCG 58 NA Drosophila melanogaster 50 pHCl FBgn0036542 FBtr0100034,FBtr0100037,FBtr0100035,FBtr0100036 2 4 4 105 3L 15857831 15858867 ATGGAGAGCATTTCCTACG 59 15857744 15857763 TTAAGTACGCGTTCAATGTG 58 NA Drosophila melanogaster 50 Eig71Ee FBgn0004592 FBtr0075585 1 1 1 60 3L 15648354 15648374 CACTACTAAGAAGACAAACCC 57 15648314 15648332 TTCCGTCAATGGAGTAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdi FBgn0014002 FBtr0075650,FBtr0075648 2 2 2 62 3L 15131457 15131475 TTAAGATCTCGTCCTTCCC 58 15131413 15131431 AGTCGATGACCTTGTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100039,FBtr0100040 1 2 6 93 3L 14193463 14193483 CGAACGATGGAAATAACAACC 59 14193538 14193847 TCGTCATCATCTTGAGGTG 59 NA Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100041 2 1 6 99 3L 14223198 14223286 AAAGATTGTCTGGAACTGCT 59 14223348 14223366 CTGCATATTCGGTCTTGGT 59 NA Drosophila melanogaster 50 Rgl FBgn0026376 FBtr0075793 2 1 4 82 3L 13903682 13907076 TATACCTACACGAAGCCCA 59 13903618 13903637 ACTTTCTTCAGGTAAACGGT 59 NA Drosophila melanogaster 50 CG14105 FBgn0036359 FBtr0075857 2 1 1 101 3L 13419261 13419281 GGTGTCCTTTATCGTAAACTG 58 13419125 13419198 TTCCACCAACTGTTCTCTG 59 NA Drosophila melanogaster 50 CG11279 FBgn0036342 FBtr0075887 1 1 1 80 3L 13040390 13040408 CGTTATTTCGAAGTCGGTC 58 13040452 13040470 TTGCTCAACTGGATGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14119 FBgn0036322 FBtr0075869 2 1 1 62 3L 12884895 12884916 GTCCTGTTTCAATGAATGTACC 59 12884939 12884957 GTTGTCCCATATACGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CAH2 FBgn0027843 FBtr0076001 1 1 1 127 3L 12175451 12175469 TACACTGGTTCTCTGACCA 59 12175621 12175639 AGATGATCATCGTTGGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32091 FBgn0052091 FBtr0076106 3 1 1 80 3L 11635177 11635257 CTTCAGCATTACGAATGGC 59 11635301 11635319 AAGTCAAATCCGTAGACGG 59 NA Nonspecific Drosophila melanogaster 50 CG33490 FBgn0053490 FBtr0089526 3 1 1 91 3L 11566886 11566964 AAGTATTCGTGGTATCCCT 57 11566813 11566832 TATTCTAGCAGAGATCGGAC 58 NA Drosophila melanogaster 50 CG7573 FBgn0036153 FBtr0076170,FBtr0076171 1 2 2 100 3L 11305505 11305523 TGTTGGGTTTGATTTGTGC 59 11305639 11305660 CTCGCTTAACATATGAATAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 Cpr67Fa2 FBgn0036109 FBtr0076192 1 1 1 87 3L 10885432 10885450 CTTGGAGTACATCCGTACC 59 10885498 10885519 CGATTTCGATTAACCAAAGACC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG34001 FBgn0054001 FBtr0100056 3 1 1 61 3L 10627414 10627432 GGATAAACCATTTGCGGTG 59 10627457 10627475 TTTCTAGGAGTCGTTCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpr10 FBgn0052057 FBtr0076310,FBtr0076308,FBtr0076309 3 3 3 84 3L 10143596 10144088 TCATCAGGATAAGGTGCTC 58 10143530 10143548 AATGGATTTGGTCTCCTCC 58 NA Drosophila melanogaster 50 CG32052 FBgn0044328 FBtr0076330 3 1 1 83 3L 9798477 9799013 CAGGAAACGGTATACATCGT 59 9799059 9799077 GAAAGTCAACTGGTTGTGC 59 NA Drosophila melanogaster 50 CG8336 FBgn0036020 FBtr0076384,FBtr0076386,FBtr0076385 1 3 3 122 3L 9624229 9624301 CAAGTTCACAGGAGATGGG 59 9624387 9624405 TAGTATCGATTCGCCTTGC 59 NA Drosophila melanogaster 50 CG32048 FBgn0052048 FBtr0076377,FBtr0076376 1 2 2 107 3L 9584403 9584421 ATAATGCCATCGCATTCGA 59 9585230 9585248 CAGCTGAGTGATCTCAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 path FBgn0036007 FBtr0076428,FBtr0076427 2 2 2 109 3L 9490135 9490223 CCAACAACCGATAATGAAACTC 59 9490047 9490066 AAGATTCCCATGATGAGACC 59 NA Drosophila melanogaster 50 CG3967 FBgn0035989 FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480 1 5 5 116 3L 9411532 9411550 AACAATTTCGTGCTCTACG 58 9410905 9411452 TGTGTTAGGACTGTTTGTG 57 NA Drosophila melanogaster 50 eIF-4E FBgn0015218 FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487 2 7 7 94 3L 9393610 9393692 AGAACATTCGTCCCATGTG 59 9393534 9393553 GTTATCCAGATCGGTCTTGG 59 NA Drosophila melanogaster 50 CG4452 FBgn0035981 FBtr0089493,FBtr0089494,FBtr0089495 3 3 3 192 3L 9362319 9362340 CATGTGGTTGCTATAACATACC 59 9362724 9362742 AGTTGTCCACCTTCATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5144 FBgn0035957 FBtr0076523 3 1 1 60 3L 9041122 9041142 AGCTGGAGAGTAAGATTTGTG 59 9041162 9041182 TATTTACCCTTGTACTCTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cp18 FBgn0000357 FBtr0076571 3 1 1 87 3L 8720281 8720299 GAAACCATGGAGGATATGG 57 8720350 8720368 TACTGAGATCCCACATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SrpRbeta FBgn0011509 FBtr0076598 3 1 1 90 3L 8712804 8712822 TATAAACACCGTGCCAAGG 59 8712675 8712750 TGGTGTACAGAAAGTCTGC 59 NA Drosophila melanogaster 50 Idh FBgn0001248 FBtr0076671,FBtr0114548,FBtr0114547,FBtr0076668,FBtr0076673,FBtr0076669,FBtr0114549,FBtr0076667,FBtr0076670 2 9 9 60 3L 8350910 8350931 CATTAAGAGCCAACTGATTCTG 59 8350871 8350889 ACCAAGATCGTAGGTATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7112 FBgn0035879 FBtr0113153 2 1 2 110 3L 8344379 8344397 ATCGGGATAATGGTAGTGG 58 8344471 8344876 TCTTGTACTCCTGATTGCC 58 NA Drosophila melanogaster 50 CG16998 FBgn0035795 FBtr0076829 1 1 1 60 3L 7532761 7532781 GGCATTGATTACATCACTCTG 59 7532721 7532740 GCTATCTGGATACTGAACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lqf FBgn0028582 FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794 3 6 6 87 3L 7527257 7527345 GGATTTCAAGGATCCAAACG 59 7527392 7527413 AGAAATATCCAGCAGATCTAGC 59 NA Drosophila melanogaster 50 smid FBgn0016983 FBtr0076851 3 1 2 101 3L 7375349 7375367 GAAACAGATGACCAGGGAG 59 7375430 7375502 GAAATGATCGAGAATGCTTGG 59 NA Drosophila melanogaster 50 CG8607 FBgn0035760 FBtr0076837 2 1 1 61 3L 7313437 7313458 GGCGAATCTGTATAAGAAACAC 59 7313543 7313561 GAATGTCGTGCATGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 mei-P22 FBgn0016036 FBtr0076836 3 1 1 64 3L 7237763 7237781 ATCCCGGGATAAAGTTGTC 59 7237809 7237827 TATATGGAGGCTTCAGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33523 FBgn0053523 FBtr0091475 1 1 4 102 3L 5918409 5918505 CTGGGTACTAAATGCTGCT 59 5918570 5918589 AATGTACTGGTTGATGTCCT 58 NA Drosophila melanogaster 50 CG10576 FBgn0035630 FBtr0077121,FBtr0077122 1 2 2 210 3L 5757776 5757794 TGACTACACGTTAAAGGCC 59 5756865 5757540 GAGGGAGTAGTTATTGGCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG33514 FBgn0053514 FBtr0091456 1 1 1 60 3L 4365596 4365615 TTAAGACATGGATCGAGCAG 59 4365638 4365656 ACCAGAAACTGATCATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11583 FBgn0035524 FBtr0073242 1 1 1 60 3L 4282229 4282247 TGAAGATGACGGGAAACTG 59 4282187 4282206 AATTTGGAGTCAAACGAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr64Aa FBgn0035510 FBtr0073254 3 1 1 107 3L 4208899 4208918 CAATACACCTTCAGCTACGA 59 4208484 4208502 CTCAATCAGTGAATAGGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11594 FBgn0035484 FBtr0073283,FBtr0073285,FBtr0073284 2 3 3 97 3L 4023565 4023583 CAAATACTTGGCGTTCGTC 59 4023428 4023446 AAAGTAGCGTTTGAAAGGG 58 NA DesignNoJunction Drosophila melanogaster 50 mge FBgn0035473 FBtr0073176,FBtr0073175 1 2 2 63 3L 3908526 3909016 GAACTACGATGATGAGCCC 59 3908481 3908499 GAACATCTCGGTTAGTCCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG11505 FBgn0035424 FBtr0073046,FBtr0073047,FBtr0073045 3 3 3 96 3L 3231784 3231917 GCCAAAGAGAAAGATAATCGTC 59 3231974 3231992 TAGTGTTGTGCTCTGTAGC 59 NA Drosophila melanogaster 50 CG32278 FBgn0052278 FBtr0073033 1 1 1 81 3L 3171095 3171170 AAGCTCAAGCAGATCAAGG 59 3171214 3171233 CCAGATCCTTGTGTAGAGTC 59 NA Nonspecific Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 1 9 15 80 3L 3083795 3084812 CTCGCCACTTATATGAATCG 58 3084852 3084873 CAAATTAAGTAGTGAGAACCCG 59 NA Drosophila melanogaster 50 CG33234 FBgn0053234 FBtr0113457 1 1 2 112 3L 2662835 2662999 ATATGGATGCTGAGATGCC 59 2663072 2663093 CTTAGCCAAGTCAAGATAACAC 59 NA Drosophila melanogaster 50 CG12020 FBgn0035273 FBtr0072778 1 1 1 60 3L 1798157 1798176 TTCACGTTCTTCATTTGCAC 59 1798199 1798217 CTACGTCCGTAATGACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7955 FBgn0035244 FBtr0072754,FBtr0072756,FBtr0072755 3 3 3 154 3L 1622520 1622538 AGTACTCCACTCAGGTAGG 59 1622656 1622740 CAGAATGTTATGCTCGGTG 58 NA Drosophila melanogaster 50 pUf68 FBgn0028577 FBtr0072710,FBtr0072707,FBtr0072709,FBtr0072708 2 4 4 157 3L 1498789 1499053 CTCATGTGCAGAGTCTACG 59 1498650 1498668 ATCTCATACTCCACGAACG 58 NA Drosophila melanogaster 50 CG13914 FBgn0035209 FBtr0072678 3 1 1 85 3L 1331979 1331997 GTCAGAATGTGGCTTTGTC 59 1332046 1332064 GTTCTCCAGGATCTTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3344 FBgn0035154 FBtr0072609 2 1 1 72 3L 686599 686617 TACAGGTTGATGTCCAGAG 58 686492 686510 CCACATCGAATTTCACGAG 58 NA DesignNoJunction Drosophila melanogaster 50 RhoGEF3 FBgn0035128 FBtr0089651,FBtr0089654,FBtr0089653,FBtr0089652 1 4 4 81 3L 302290 302367 CATTTGTGATGGTTACCTGC 59 302411 302429 GTTGGAGAAGATAAGCCGA 59 NA Drosophila melanogaster 50 gol FBgn0004919 FBtr0072460,FBtr0072459 3 2 2 74 2R 20962926 20962944 ACACCATACGGATATTGCC 59 20962812 20962830 TTCGATGCTCTATAAGCCA 58 NA DesignNoJunction Drosophila melanogaster 50 Atf-2 FBgn0050420 FBtr0072381,FBtr0072382 2 2 3 80 2R 20766554 20766574 GTACATAGTGGCCCTAATAGC 59 20766614 20766695 TTATGGAACCAAGTTACTCCG 59 NA Drosophila melanogaster 50 yki FBgn0034970 FBtr0110864 1 1 3 148 2R 19953830 19954095 ATCCCAGAATGCAATCTGG 59 19953617 19953635 CAAATCGTCAGGTTTGTGG 59 NA Drosophila melanogaster 50 CG34213 FBgn0085242 FBtr0112406 2 1 1 80 2R 19854979 19855050 AATTCAGATGAGGGAACCC 58 19854917 19854937 GAACTGGAAACTAAATCCAGC 59 NA Drosophila melanogaster 50 CG4585 FBgn0025335 FBtr0072227 2 1 1 68 2R 19751615 19751633 CCAGTACGAAACTACCCAC 59 19751565 19751583 CACAGGATATCCAGGTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tango11 FBgn0050404 FBtr0071747,FBtr0071746 1 2 2 60 2R 17604978 17604996 GGGAGAAGATCGTCTACTG 58 17604936 17604955 AGCCAGAATATTGTCTTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10069 FBgn0034611 FBtr0071590,FBtr0071589,FBtr0071591 1 3 3 80 2R 17172236 17172254 ATCTATCAGATGTGAGCGG 58 17172298 17172372 GATACATCAGCAGAATGGG 57 NA Drosophila melanogaster 50 CG13438 FBgn0034545 FBtr0086237 2 1 1 60 2R 16580845 16580864 AATGGCTTCAATGACATGGA 59 16580887 16580905 TGGTAGTCTGTCTCCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 exu FBgn0000615 FBtr0086243,FBtr0086242,FBtr0086244 3 3 3 134 2R 16557493 16557511 TATGCTGAAGTCGATGCAG 59 16557294 16557313 TAGATAAGCACAATCCCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11159 FBgn0034539 FBtr0086248 3 1 1 129 2R 16543721 16543740 CATCCAAATCTATGCAGCTG 59 16543480 16543577 TCGTTAAGGAACTCTTCGC 59 NA Drosophila melanogaster 50 CG11110 FBgn0034535 FBtr0086231 1 1 1 145 2R 16529637 16529655 GAAGATTATCAAGCGCGTG 59 16529764 16529782 GTCCAAAGGTATTGCTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13428 FBgn0034515 FBtr0086267 3 1 1 198 2R 16427862 16427880 TATTTACGTTGTGGCTCTG 57 16427295 16427313 GTCCTCCAATGTATCACGA 58 NA DesignNoJunction Drosophila melanogaster 50 mus209 FBgn0005655 FBtr0086308,FBtr0086307 2 2 2 62 2R 16149429 16149447 GATCAAGGATCTGGGTCAC 59 16149385 16149403 TATGTCTCGTTGTCCTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp56i FBgn0043532 FBtr0086337 3 1 1 60 2R 15755650 15755670 GTTAGTCGTCGTTACATTACC 58 15755749 15755768 GCATTGATCCTTAATGGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457 3 11 15 114 2R 15365199 15366254 CTTTCACTCTGGTCAAACC 58 15366332 15366350 GAGTTTGGAGAAGAAGCTC 57 NA Drosophila melanogaster 50 cora FBgn0010434 FBtr0086506 2 1 4 101 2R 15124559 15124841 GAAGGAGAAGTTGATGCGA 59 15124906 15124924 ATGGCCTCAATCTCTAGGT 59 NA Drosophila melanogaster 50 l(2)03709 FBgn0010551 FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616 1 6 6 191 2R 14707870 14707888 GATGATCAACATCTCGCTG 58 14708043 14708123 ATGAGTAGGGATACCTGCT 59 NA Drosophila melanogaster 50 CG34020 FBgn0054020 FBtr0100075 2 1 1 116 2R 14645021 14645139 ATAGCCCTATTGGTTCACC 58 14644776 14644794 TTATGGACTTCCTTGGGAG 58 NA Drosophila melanogaster 50 mRpS28 FBgn0034361 FBtr0086714 1 1 1 99 2R 14502017 14502035 TTGGTTGGAAGTTTCACTG 58 14501879 14501897 AACTCCAAGTCCTTGATGC 59 NA DesignNoJunction Drosophila melanogaster 50 GstE7 FBgn0063493 FBtr0086675 1 1 1 60 2R 14294602 14294620 AGAAGAATCCACAGCACAC 59 14294642 14294662 GAGTCCCAGATATAATGTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dgp-1 FBgn0027836 FBtr0086774,FBtr0086773 2 2 2 137 2R 14058156 14058234 TATGGAAATAAGGGTTGCC 57 14058037 14058055 TCAATTTCGTGCTTGTGAC 58 NA DesignRelaxed Drosophila melanogaster 50 Dgp-1 FBgn0027836 FBtr0086774,FBtr0086773 3 2 2 208 2R 14058156 14058235 TTATGGAAATAAGGGTTGCC 57 14057967 14057985 CTTGTTAACCACATTGCCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG10910 FBgn0034289 FBtr0089630 3 1 1 121 2R 13908154 13908172 GATATTTGGAACGCCAGGA 59 13908257 13908343 ATTCAGAACGGTATCCACG 59 NA Drosophila melanogaster 50 Sema-1b FBgn0016059 FBtr0086890,FBtr0086891 2 2 2 106 2R 13565404 13565422 CAAGACAAAGTCCTAGCCC 59 13564084 13565334 TTGTAGATGACGTCCTTGG 58 NA Drosophila melanogaster 50 rhi FBgn0004400 FBtr0086897 2 1 1 103 2R 13519484 13519502 GAGCTTGAGGATCATTGTG 58 13516193 13516212 TTGGAGTCGATTATGTTGTG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 l(2)k07433 FBgn0022085 FBtr0086948 2 1 3 83 2R 13408423 13411598 AATCTAACCGGTCCTAAACTC 59 13408360 13408378 AACACAGTATTCAACGGCA 59 NA Drosophila melanogaster 50 CG4853 FBgn0034230 FBtr0086938 2 1 2 121 2R 13403022 13403097 GGTTTCTATCCTAAACACCCA 59 13403180 13403198 TGATAAGCAGGTTGACCAC 59 NA Drosophila melanogaster 50 CG4847 FBgn0034229 FBtr0086937,FBtr0086936,FBtr0086934,FBtr0086933,FBtr0086935 1 5 5 66 2R 13400456 13400474 AATTGACCGGTCTGAAGAG 59 13400569 13400587 TTGACCAACTTCAAACTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG34193 FBgn0085222 FBtr0112386 1 1 1 83 2R 13397520 13397538 CACTTTGGCTCTTTCAGTG 58 13397652 13397670 TTCTTCGTCATAGGGAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6796 FBgn0034177 FBtr0087057 3 1 1 170 2R 12889886 12889967 GAAATGTTGGCTGAAGGAC 59 12890099 12890119 ATCCATGTAGTCGTGTATAGC 59 NA Drosophila melanogaster 50 CG34191 FBgn0085220 FBtr0112384 1 1 1 60 2R 12839926 12839944 ACTGCTGGTAATGTGTTCC 59 12839968 12839986 CTCGATCTCTGGGTATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 inaC FBgn0004784 FBtr0087047 2 1 1 82 2R 12788521 12788596 AATAACGAGCTTCCTGACC 59 12788642 12788660 AAGGATGCGTGGTAATCTC 59 NA Drosophila melanogaster 50 Hmgs FBgn0010611 FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146 1 5 5 60 2R 12227687 12227705 CAGCAGAAGGATACTTCCA 58 12227727 12227747 GGAATAGGATAGCATCGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lis-1 FBgn0015754 FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240 3 6 6 211 2R 12070355 12070374 GCCGGAGATTATGTACTCTC 59 12070615 12070701 CGTAATTCAACCTTGCAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG8405 FBgn0034071 FBtr0087210 3 1 1 80 2R 11936759 11936841 GTTTATAGTCGACCTGCTG 57 11936885 11936903 AATATGACAGTGAGCAACG 57 NA Drosophila melanogaster 50 CG8152 FBgn0034008 FBtr0087392 2 1 1 60 2R 11198382 11198400 TCGTGAGTTCTACAAGGAG 58 11198340 11198358 ACTTGGAAGGTTAGGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 chn FBgn0015371 FBtr0111007,FBtr0111006,FBtr0087415,FBtr0087416 3 4 4 113 2R 11025934 11026024 CAAATCTGCAACAACTCGA 58 11026101 11026119 GTTGCTGGATTACATTGGC 59 NA Nonspecific Drosophila melanogaster 50 CG10131 FBgn0033949 FBtr0087499 2 1 1 62 2R 10517517 10517535 TGTATGACATCCTGGAGAG 57 10517561 10517579 GATGCAAATCCTTGTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp50a FBgn0050067 FBtr0087557 2 1 2 93 2R 10258354 10258372 GTACACGTTTGTTGCTCAG 59 10258222 10258297 AATCTAAACGGCAACTTGC 59 NA Drosophila melanogaster 50 Ih FBgn0028428 FBtr0100372 2 1 4 87 2R 10179875 10181605 GAGGAGGTCTATATTCTGCA 57 10181655 10181673 TTGTCAAGCCATCTTTGTC 58 NA Drosophila melanogaster 50 CG13018 FBgn0040751 FBtr0087581 2 1 1 118 2R 10044829 10044847 GGATCTCAAGATGTGCCTC 59 10044729 10044747 CGTAGAAGGTATTGCGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33155 FBgn0053155 FBtr0100451,FBtr0100452,FBtr0100453 3 3 3 273 2R 9842525 9842543 TTTGCCCTGATTGATTCAG 57 9842950 9842968 TAGATCTTCTCGATCACCG 57 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 drk FBgn0004638 FBtr0087693,FBtr0087697,FBtr0087698,FBtr0087696,FBtr0087694,FBtr0087695 1 6 6 80 2R 9385034 9385133 TCTCCTTATCAGTCAAATGCC 59 9384974 9384992 CCCAGAGGAAGAATTTGCT 59 NA Drosophila melanogaster 50 CG17050 FBgn0033831 FBtr0087719 3 1 1 90 2R 9277947 9278040 TGATGTTTCAGGCTTTGGA 59 9277875 9277896 GCAGAGGTATACAATTCTTCGA 59 NA Drosophila melanogaster 50 CG4716 FBgn0033820 FBtr0087747,FBtr0087746 2 2 2 60 2R 9144345 9144366 CCGGAATCCATATTATCAAACG 59 9144387 9144405 TTATGCTCCTCAGATGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nacalpha FBgn0086904 FBtr0087860,FBtr0087858,FBtr0087859 2 3 3 69 2R 8647677 8647695 CAGATGTGTACAAGAACCC 57 8647626 8647644 GACAGATCCTCGATCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vis FBgn0033748 FBtr0087944 2 1 2 137 2R 8396496 8397090 CAGTGTCATCTACAGGTCC 59 8396318 8396336 TCCTCAGTCCCAAATACAG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Lac FBgn0010238 FBtr0087932,FBtr0087933 3 2 2 81 2R 8341113 8341131 TATCCTACATCACGCAGGA 59 8341175 8341194 TACTCTTTGGCATACTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SIP2 FBgn0061197 FBtr0089670,FBtr0089669,FBtr0089671,FBtr0089668 2 4 4 97 2R 8191550 8191640 CAGATAAGCGATCTAAGGGAG 59 8191473 8191491 ATCTTGGACACTTCCTTGC 59 NA Drosophila melanogaster 50 RpS11 FBgn0033699 FBtr0088005,FBtr0088007,FBtr0088006 2 3 3 126 2R 8087085 8087348 CTGTGTTCAGAGATGTTGAG 58 8086978 8086996 TTCTTGAAGCTCTTCTTGG 57 NA Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 2 12 12 120 2R 6499213 6499231 GATTCCTGGACTTCACACC 59 6499313 6499429 TCGGTGGTATTTGATAGATCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Syb FBgn0003660 FBtr0088362 3 1 2 126 2R 6138638 6139440 AACAACGAGAACAACAATGC 59 6138531 6138549 GTTCCGATAGCTTCTGGTC 59 NA Nonspecific Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414 2 10 10 71 2R 5991854 5991872 TGTCGACAGTCGATAAGGA 59 5991904 5992232 TATCATCGTAACGTTCTGACTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 3 9 9 68 2R 5738998 5739016 CTTTGAGTTGAATGGCCAG 59 5738880 5738966 ACATGGATCTCCTTAACGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG8170 FBgn0033365 FBtr0088665 2 1 2 87 2R 4909291 4909309 CTACAGTCTGCAGGATCTG 59 4908981 4909240 TGTGATGTCGACTTTCTCC 59 NA Drosophila melanogaster 50 CG8229 FBgn0033356 FBtr0088673,FBtr0088672 2 2 2 60 2R 4837923 4837944 CCTCTGATGAAGATCTGAACTC 59 4837884 4837902 AGTTCAGATTGTGGAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30497 FBgn0050497 FBtr0088932 1 1 3 83 2R 3629422 3665994 TATCCCATAATGCAGTGCG 59 3629357 3629375 CTGGTAGACGTCCATTCTG 59 NA Drosophila melanogaster 50 CG1942 FBgn0033215 FBtr0088928 1 1 1 119 2R 3601396 3601473 ATTGTCCAAGTTGTTGGTG 58 3601553 3601574 GTACTGATCGAATAACTTCTCC 58 NA Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088988,FBtr0088989,FBtr0088990 2 3 9 91 2R 3362872 3362953 CAATAAATGCAGGAGATCGG 58 3361302 3361320 TTGTGATGTGAAGATCCCA 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111093,FBtr0111073 2 2 60 111 2R 3236476 3245109 ATGCCGTTCTTTAGATGGT 58 3236383 3236403 CTGCGTCCTTAATAATGAGAG 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111081,FBtr0111069 1 2 60 80 2R 3229659 3229677 GATTCTATTCGTGTCACGC 58 3219874 3229615 ATCTGGGAGGTACATTCAC 58 NA Drosophila melanogaster 50 CG12164 FBgn0033158 FBtr0088963 1 1 1 111 2R 3199604 3199686 GAAGGAAGTCAAGGTTCCC 59 3199761 3199779 CACCTTAACCTCCTTCCAG 59 NA Nonspecific Drosophila melanogaster 50 ppk25 FBgn0053349 FBtr0086169 3 1 1 81 2R 2838479 2838498 AATCATTACTGAGGTGGGTC 59 2838542 2838726 CTGTGTTTCTAGTTTGCCG 59 NA Drosophila melanogaster 50 CG34212 FBgn0085241 FBtr0112405 3 1 1 71 2R 1937592 1937610 GTGTTTCTACTTGGTGGTC 57 1937539 1937557 AGGATGAAGCAACCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40130 FBgn0058130 FBtr0111295 3 1 1 144 2R 284512 294007 ACCACTAGGAATCCTTTACG 58 294325 294343 CGAAGAATACCAGTGGTCC 59 NA Drosophila melanogaster 50 CG41439 FBgn0084005 FBtr0111228 1 1 1 60 2L 22243507 22243526 TCTTAGTGGAGAATGAGCCT 59 22243466 22243485 ATGACATATCGATCGTTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 crc FBgn0000370 FBtr0100139,FBtr0081512 2 2 3 89 2L 21312033 21312106 CTTTGCAAATGGCATTACTC 57 21312158 21312176 ATCTCCTCATCACTAAGCA 57 NA DesignRelaxed Drosophila melanogaster 50 Ret FBgn0011829 FBtr0081496,FBtr0081494,FBtr0081493,FBtr0081492,FBtr0081495 1 5 5 88 2L 21184334 21184355 GAGCCTGTTAATGTTAAGATGG 59 21184212 21184288 CGATGAACCAACTTTAACTCAG 59 NA Drosophila melanogaster 50 CG31675 FBgn0051675 FBtr0081429 3 1 1 164 2L 20868504 20868524 GTTTGAAACGGGTATTCAAGG 59 20869242 20869260 ATCCGTTGCAGTAGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 lok FBgn0019686 FBtr0081328 1 1 3 121 2L 20061955 20061973 ATGGAGAAGATAGTCTGGG 57 20062058 20062160 TCGTTGTTGAGATCAACAG 57 NA Drosophila melanogaster 50 CadN FBgn0015609 FBtr0100316,FBtr0100313,FBtr0081020,FBtr0081016,FBtr0081013,FBtr0081015 2 6 12 102 2L 17651480 17655677 TCATACTGATACTCGTCTTGG 58 17651398 17651416 TTGATGATATTCTCGCGCA 59 NA Drosophila melanogaster 50 CG15144 FBgn0032648 FBtr0080992 2 1 1 91 2L 17528321 17528339 AGTTGAAGAACAAGTGCGA 59 17528190 17528268 AGAAGATTCCCTATAGAGGGT 58 NA Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976 2 4 6 108 2L 17394484 17400407 CTTATACAGATAACAGCAGCG 58 17400477 17400495 CCAATGAAGGCAATCTGTC 58 NA Drosophila melanogaster 50 Cas FBgn0022213 FBtr0080930 1 1 1 93 2L 16823561 16823650 AGTACGATTCGTTGGTCTC 59 16823486 16823504 AGAATCTCTGGGTTCTCGA 59 NA Drosophila melanogaster 50 mdy FBgn0004797 FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917 2 4 4 87 2L 16820785 16820804 CATAACGCCCTAATCCTGAG 59 16820919 16825419 CAATTATTTCCATGGCTAGACC 59 NA Drosophila melanogaster 50 trpgamma FBgn0032593 FBtr0080946,FBtr0080945,FBtr0114470 1 3 3 80 2L 16665213 16665232 CGAGCAAGAATATTTGTCCG 59 16665101 16665173 GCTTAAGGGTCTTATCATTCAG 58 NA Drosophila melanogaster 50 mol FBgn0086711 FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015 1 5 5 162 2L 14977342 14977360 TATGAAGGCTTTGACAGGT 58 14977067 14977217 AATAAAGCAGAGAATGCCTG 58 NA Drosophila melanogaster 50 CG3491 FBgn0028887 FBtr0080675 2 1 1 132 2L 14929652 14929727 CTAGCCAAATACCGAAAGGA 59 14929822 14929840 TTCCGTTTGATACATCCGA 58 NA Drosophila melanogaster 50 CG4480 FBgn0032553 FBtr0080684 2 1 1 60 2L 14871561 14871579 TCTATCACTACAAGCCGGA 59 14871453 14871473 GCCCAATAAACCTTTATCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 smi35A FBgn0016930 FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289 3 5 5 91 2L 14195795 14195814 CGGATGGATCTCATAATGTC 57 14189224 14195741 CAGGTTCAAGCTCATTAGC 58 NA Drosophila melanogaster 50 RpL24 FBgn0032518 FBtr0080524 3 1 1 72 2L 13394263 13394282 CTATCAAGCTTGGCTTACAG 58 13394210 13394229 TGATGATTCATGACGTACAC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG5458 FBgn0032478 FBtr0080437 3 1 1 60 2L 13183857 13183875 ACAGAGACAAGGTAGAGGT 59 13183895 13183917 GTAGTTCCCATCATACTGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pk34A FBgn0028410 FBtr0080432 3 1 1 60 2L 13159376 13159394 TCAATGTCCGCATACTCTC 59 13159415 13159436 CCCAATAGATGAAGATATCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17036 FBgn0032449 FBtr0080408 3 1 1 60 2L 12700288 12700306 GGTACAAACCGGTTATCGT 59 12700246 12700264 ATAAGCATGGAGAACAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bru-2 FBgn0043904 FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351 3 4 4 139 2L 12385726 12389193 ATTGGAGCTATAAAGGCCC 59 12389295 12389314 GTATTGATGCCACAGAATGC 59 NA Drosophila melanogaster 50 CG31862 FBgn0051862 FBtr0080350 1 1 1 60 2L 12339354 12339372 ATAAGGACACTGACAAGGA 57 12339395 12339414 AACAAATCGATGATATGGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16997 FBgn0032413 FBtr0080335 3 1 1 60 2L 12111331 12111350 ATTAATTCCAACTGGCTGGT 59 12111370 12111391 CAAGTACTTGATTCCTATTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-thr FBgn0027081 FBtr0080333,FBtr0080332,FBtr0080331 2 3 3 63 2L 12104541 12104694 ATACTCGCAAGGAACTCAG 59 12104721 12104739 TTCTCCCAGAAGACATTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG6555 FBgn0032367 FBtr0080270 1 1 1 60 2L 11591617 11591636 CACCATTATCCTGTTTCTGG 58 11591576 11591595 GTCTGGAAGTACACTTTCAG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 salm FBgn0004579 FBtr0089913 1 1 1 80 2L 11436265 11436283 AAGCAACACATGCTAACTC 58 11435916 11436223 CTCACTCATATACTTTACGGC 58 NA Drosophila melanogaster 50 w-cup FBgn0032269 FBtr0080132 2 1 1 60 2L 10577061 10577079 TACCATCATACCGCAATCC 59 10577019 10577037 ACTTGCCTCCATTTGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5390 FBgn0032213 FBtr0080064 1 1 1 80 2L 10304764 10304840 CAGTAGCATTGTTGTGAGAG 58 10304703 10304721 TTGACATATCGGTCTTCGT 58 NA Drosophila melanogaster 50 RpL13 FBgn0011272 FBtr0079888,FBtr0100164 1 2 2 170 2L 9968212 9968230 GAGAAGAAGTTCAAGGCCT 59 9968433 9968451 GTAGACAGAACGATCAGGT 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Oatp30B FBgn0032123 FBtr0079827,FBtr0079828,FBtr0079826,FBtr0079825 2 4 4 83 2L 9537728 9537811 GCATATGGATTATTGCTACGAC 59 9537854 9537873 TTCTTAGACTTGGTCTGTGG 58 NA Drosophila melanogaster 50 CG32982 FBgn0052982 FBtr0079771,FBtr0110960,FBtr0079772 3 3 3 170 2L 9156575 9161131 TGGGACAGTTTATCTTCAAGG 59 9161263 9161397 TCATTGTGCATTCCTCCAG 59 NA Drosophila melanogaster 50 CG9555 FBgn0032085 FBtr0079761 3 1 1 91 2L 8992784 8992859 TTTATCCTTCCATGCCAGG 59 8992912 8992932 CATAAAGCAATCGAAGACCAG 59 NA Drosophila melanogaster 50 mus201 FBgn0002887 FBtr0005674,FBtr0005673,FBtr0100473 1 3 3 111 2L 8440832 8440850 CAGTGATGAGGAAGTTTCG 58 8440925 8441035 TTTGATAATCTCCTCCGGA 57 NA Nonspecific Drosophila melanogaster 50 CG14534 FBgn0031957 FBtr0079563 2 1 1 89 2L 7860409 7860427 GTCTACGTCCATGTACCTC 58 7858882 7858900 GATCTTGTAGTGCTTCTGC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG4502 FBgn0031896 FBtr0079417,FBtr0079416 3 2 2 68 2L 7196232 7196327 ACGACAAGATCACAAGGTG 59 7196182 7196200 CGAATCGTATGATCCGGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3476 FBgn0031881 FBtr0079389 2 1 1 108 2L 7028578 7028596 ATCAACTATTCTGTCCGGC 59 7028728 7028746 CTTGTATGTTCCCTCAGGT 58 NA DesignNoJunction Drosophila melanogaster 50 homer FBgn0025777 FBtr0079307,FBtr0079306,FBtr0110778 3 3 3 137 2L 6722249 6722267 ATAAACTCGACGATCACAC 57 6722075 6722148 CTTCTCTACGAACTTGGTC 57 NA Drosophila melanogaster 50 homer FBgn0025777 FBtr0079307,FBtr0079306,FBtr0110778 2 3 3 137 2L 6722248 6722266 TAAACTCGACGATCACACC 59 6722074 6722148 ACTTCTCTACGAACTTGGTC 59 NA Drosophila melanogaster 50 GRHR FBgn0025595 FBtr0079308,FBtr0079310,FBtr0079309 3 3 3 99 2L 6713835 6714562 GTGTACAGCATACTGTTTGTG 59 6713756 6713775 TGATATCAATACGCAAGGGA 58 NA Drosophila melanogaster 50 CG9531 FBgn0031817 FBtr0079270 3 1 1 102 2L 6466888 6466907 CTGAAGGACAAGAAGTACGA 59 6466751 6466824 TAAGGTTCTCATACACCACG 59 NA Drosophila melanogaster 50 CG9486 FBgn0031791 FBtr0079243 3 1 1 61 2L 6256175 6256196 GGACAAGATACACAAGTTTCTG 59 6256216 6256236 CGTAGTGCTTGAAGATATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15393 FBgn0031429 FBtr0077784 1 1 1 203 2L 2490014 2490032 TCTAGGCACCCATTAACAC 58 2489829 2489847 TAGTGCTAATTGCTGGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpp FBgn0000490 FBtr0077774,FBtr0077772,FBtr0077775,FBtr0077771,FBtr0077773 1 5 5 60 2L 2458369 2458387 GACCACTTTAACTCGACCA 59 2458410 2458429 CGGGATTCATATTGTTGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15387 FBgn0031403 FBtr0077841 2 1 2 70 2L 2226059 2226077 GATTCTCATGATGCAGCAC 58 2225950 2225968 ACCCATGACCCTTAATGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Got2 FBgn0001125 FBtr0077868,FBtr0100359,FBtr0077867 2 3 3 82 2L 1985509 1985527 TACTACGACAAGGACACCT 59 1985376 1985394 AGAACAATGCTCTTCTCGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG17646 FBgn0031362 FBtr0077886,FBtr0077885 3 2 2 94 2L 1747846 1748777 CTGTGGTCTTGACATTTCC 58 1748834 1748853 GATCAACGAGAGGAAGTAGG 59 NA Drosophila melanogaster 50 smi21F FBgn0016926 FBtr0077988 2 1 2 167 2L 1118689 1118707 TTGTCTAGCTTACGCAAGG 59 1117491 1117509 GATCGACATATTGGCTGCT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4341 FBgn0028481 FBtr0077949,FBtr0112936 2 2 2 96 2L 956936 957062 ATCATTATGCCGAATTCCTC 57 957121 957139 AAAGTATAATCGTTGGGCG 57 NA Drosophila melanogaster 50 dock FBgn0010583 FBtr0078013,FBtr0078015,FBtr0078014 1 3 3 101 2L 831534 831552 TATTATGGAGCCATCACCC 58 831616 831722 GTCTCCCATGTTAGTCTCAC 59 NA Drosophila melanogaster 50 alpha-Adaptin FBgn0015567 FBtr0089488,FBtr0089489 2 2 2 81 2L 411176 411194 TATTCGTGAGGAAATGGTG 57 411045 411131 GATAACGTCCACATACCAG 57 NA Drosophila melanogaster 50 alpha-Adaptin FBgn0015567 FBtr0089488,FBtr0089489 1 2 2 80 2L 411178 411199 TACTCTATTCGTGAGGAAATGG 59 411051 411140 GTCCACATACCAGGTATAATCC 59 NA Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 2 7 8 166 2L 119224 119295 TAATGCAGACTGATGTCCTG 59 119020 119038 TTGAGCCATGGTGTTTAGG 59 NA Drosophila melanogaster 50 RpS10b FBgn0031035 FBtr0074731,FBtr0074732 1 2 2 62 X 19492231 19492477 CAATCCAGAATGTTTATGCC 57 19492502 19492520 CTCCTTGAAGAGGTACTCG 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG8661 FBgn0030837 FBtr0074444 3 1 1 132 X 17178388 17178468 TTGCGTAAATGCATTGGTG 59 17178274 17178295 GATCTTTAGGGATTTGTAGGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5070 FBgn0030824 FBtr0074389 1 1 1 74 X 17097390 17097408 GGATCTGGCTATGGATCAG 58 17097446 17097464 TACCTTGATCACCTTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4949 FBgn0030813 FBtr0074381 3 1 2 63 X 16973030 16973107 AATTTGGCAAAGCTATGCG 59 16973133 16973152 GACTGGTGATCAGTAAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAP15B FBgn0030808 FBtr0074378,FBtr0110990 3 2 2 80 X 16847421 16847439 TTGATCTTCGTAAGCGAGG 59 16847482 16847560 ACTCTCCTTTAGCACTATGC 59 NA Drosophila melanogaster 50 CG4678 FBgn0030778 FBtr0074320,FBtr0074319,FBtr0100450 1 3 3 82 X 16603629 16603647 TTACGCTGGAGATATCCTG 58 16603691 16603777 GATAAGTGACAGCTGATTGTC 58 NA Drosophila melanogaster 50 CG1764 FBgn0030467 FBtr0073796 2 1 1 89 X 13189128 13189207 TTCCAGAAGCCTACAAGAC 58 13189057 13189075 GACCACTGGAATATTGGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG10353 FBgn0030349 FBtr0114451,FBtr0114452 1 2 2 80 X 11773136 11773154 CATCCCTATAAACGTCCCA 58 11773013 11773095 GATAATGTTCTGGTAGATGACG 58 NA Drosophila melanogaster 50 Gga FBgn0030141 FBtr0071363 1 1 1 127 X 9496702 9496789 CTTGTAGCTGACACTCTGG 59 9496880 9496898 CTAGCTACTGTTGGAGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 sws FBgn0003656 FBtr0071126,FBtr0071125 3 2 2 111 X 7852386 7852406 GCTCTACAAGAAATGGAATCC 58 7852235 7852313 TTTGACCTCCTCTAGTTGG 58 NA Drosophila melanogaster 50 Act5C FBgn0000042 FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822 2 4 4 112 X 5797605 5797623 AGGATCTGTATGCCAACAC 59 5797699 5797717 CTTGATCTTCATGGTCGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL35 FBgn0029785 FBtr0070800,FBtr0070801 2 2 2 184 X 5566554 5567047 TGGTGAAGGTTAAGTGCTC 59 5567277 5567295 GTGCATCACAATGTAGACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17758 FBgn0029780 FBtr0070855 2 1 1 130 X 5547888 5547988 TATCGTTTCCATTCGACCAG 59 5547777 5547795 CTATCAACCTCCTCAACGG 59 NA DesignNoJunction Drosophila melanogaster 50 ctp FBgn0011760 FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704 2 4 4 184 X 4585720 4585738 AGTGAAGTTGTAAGCACAC 57 4592338 4592356 CTCCTTCTTGATGTAGGCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG2662 FBgn0024993 FBtr0070478 2 1 1 82 X 2592941 2592959 CAACTTGTTCCGTATCGGT 59 2593005 2593088 CTGTTTGGGTTTCTTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14805 FBgn0023514 FBtr0070312 2 1 1 80 X 1772160 1772178 CTAGGGTGTATGTTGGCTC 59 1772222 1772297 GGTGATATTCCTTCATGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4293 FBgn0024983 FBtr0100475,FBtr0070090,FBtr0070089,FBtr0100476 1 4 4 109 X 422505 422584 AAACTAGATTCAGAGCGCA 58 422414 422432 AAGGTTACTAGGTGATCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG40813 FBgn0085521 FBtr0113934 1 1 1 106 U 3136482 3136500 TATCCAACATACCCAAGCA 58 3136570 3136661 ATGATGCTTACTTGACTGC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11155 FBgn0039927 FBtr0089193,FBtr0089195,FBtr0089194 3 3 3 115 4 1147554 1147632 AGTAATACGAGTAGGTGCC 58 1147710 1147729 GTGTATTGGGAAGAAGAGTC 57 NA Drosophila melanogaster 50 pncr002:3R FBgn0063127 FBtr0091948 1 1 1 60 3R 2525772 2525793 CAATTATTCTGGATACAGCCTG 58 2525633 2525754 GTTAAATCTCTACGTATCTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3669 FBgn0039838 FBtr0113313 3 1 1 87 3R 27085019 27085039 AGTATGGAGATATCGATGAGG 58 27085088 27085396 CGATTGGGATTCTTTACGA 57 NA Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0113385,FBtr0084927 2 7 7 110 3R 21527327 21527345 AACCAGGTCCACAAATCTG 59 21527166 21527253 GACATAGATGACGCTTGCT 59 NA Drosophila melanogaster 50 CG5079 FBgn0039346 FBtr0084883 2 1 1 75 3R 21439880 21439898 CATCTCATCAGGAAGTGCA 59 21439937 21439955 TTTGCTGTCTGAAGTTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nAcRbeta-96A FBgn0004118 FBtr0084682,FBtr0084681 2 2 2 80 3R 20337253 20337274 TCTCTTTACCATGATACTCGTC 59 20336936 20337215 GTAGATGGAGATCTGAAATGGA 59 NA Drosophila melanogaster 50 Mpk2 FBgn0015765 FBtr0084581 2 1 2 169 3R 19977710 19977825 CAATGATATGCGCATTCGT 59 19977483 19977579 GTATTGATTCTCTGTTCCACG 58 NA InUTR Drosophila melanogaster 50 wfs1 FBgn0039003 FBtr0084334 1 1 2 124 3R 18515891 18515968 TTGGAATCTGGAAGATCGT 58 18515728 18515803 GATTGGGCTCTACTATGGA 57 NA Drosophila melanogaster 50 CG15499 FBgn0038891 FBtr0084124 2 1 1 178 3R 17357664 17357761 GATGAAGGTGTGGAAACGA 59 17357357 17357378 CCAGACAATTATGGATTAGAGC 58 NA DesignNoJunction Drosophila melanogaster 50 cdc2c FBgn0004107 FBtr0083921,FBtr0083922 2 2 2 87 3R 16562576 16562594 GACCAAGTTCCCTAGATGG 59 16562643 16562718 GCACAGCATTGACATTATGAG 59 NA Drosophila melanogaster 50 CG14357 FBgn0038204 FBtr0082913 2 1 1 89 3R 9937625 9937643 GATCAATTACGGAACCCTG 57 9937469 9937572 TTTCTAGTGATTCCCACGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10148 FBgn0038120 FBtr0082713 1 1 1 112 3R 8957168 8957186 TAAAGGAGTTGGATGCCAG 59 8956964 8957095 CTGTATAACCTTTACCTTGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31358 FBgn0051358 FBtr0082554 2 1 1 84 3R 7856788 7856806 AACTTTCCCTGGAAATCCA 58 7856667 7856740 ATCTCCATCAAGTCCACTC 58 NA Drosophila melanogaster 50 CG33654 FBgn0053654 FBtr0091633 2 1 1 79 3R 5408730 5408748 TAAGGTCTGCAAATCGGAG 59 5408577 5408687 TCTGTAGCCGTTAAATCGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG7352 FBgn0037581 FBtr0081842 1 1 1 128 3R 4174219 4174237 GTGACTTAGTCCAGAAGCA 58 4174328 4174401 TTTCGATTTCTAGGACTTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Snm1 FBgn0037338 FBtr0078688 1 1 1 81 3R 1382370 1382388 TGCTAACAGAAGATCGCAG 59 1382433 1382508 AAGTAATCGACTAGGCTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5262 FBgn0036988 FBtr0078230 3 1 1 134 3L 20422717 20422738 GGCGACACTATTCTTTAATGAG 59 20422478 20422623 TTTGTTTGGTCACATACGAC 58 NA Drosophila melanogaster 50 CG17147 FBgn0036954 FBtr0074824 3 1 1 156 3L 20216996 20217403 CTAACCTCAAACTTGGAGTG 58 20217521 20217540 TAGCACTGAATGTACTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mus304 FBgn0002901 FBtr0075122 2 1 1 76 3L 18105427 18105445 TCATATGCAACTGGTGGAG 59 18105550 18105569 CAGTTGGTTTAACAAACGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG4877 FBgn0036624 FBtr0075386,FBtr0075387 1 2 2 80 3L 16382654 16382673 TGCTAGATAGCAATCCAGAC 58 16382716 16382792 CCATGTCCTGGTTACTGTC 59 NA Drosophila melanogaster 50 retinin FBgn0040074 FBtr0075375 2 1 1 111 3L 16325081 16325158 TGTCTAGATTGTTCCTGCC 58 16325233 16325251 GACTTGACCGAACTGAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33795 FBgn0053795 FBtr0091799 2 1 1 117 3L 16164133 16164151 AAAGAATATCGACGGATGC 57 16163979 16164055 GTTTACATAGAAAGGGCAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 cp309 FBgn0086690 FBtr0099993,FBtr0099992 3 2 2 90 3L 15060072 15060613 TACTCAGCAGAGAAGTCCT 59 15060000 15060021 GTTATTGGTGGGTAGATTTGAG 58 NA Drosophila melanogaster 50 CG10732 FBgn0036365 FBtr0075851,FBtr0075852 1 2 2 143 3L 13437172 13437316 AGGAAAGTTGTAGAGACGA 57 13437485 13437503 TAGGGACTGAATGGATTGG 58 NA Drosophila melanogaster 50 CG11279 FBgn0036342 FBtr0075887 2 1 1 80 3L 13040390 13040408 CGTTATTTCGAAGTCGGTC 58 13040452 13040470 TTGCTCAACTGGATGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13675 FBgn0035845 FBtr0113152 1 1 1 80 3L 8154323 8154341 ATCAGAGCAACTCTACCAG 58 8154174 8154280 TGTTGCTGTTGATCATTCAG 58 NA Drosophila melanogaster 50 CG8647 FBgn0035729 FBtr0076902 1 1 1 297 3L 7005380 7005847 TCCATTAAAGATGCCCTGG 59 7006108 7006126 TGTAGCTGTTCTTCACGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr65Av FBgn0052405 FBtr0077024 2 1 1 73 3L 6132845 6132866 CATACTAAGATACGACAACGAC 58 6132683 6132701 TAACTCCATCACTGGTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14995 FBgn0035497 FBtr0073272,FBtr0073274,FBtr0073271,FBtr0073273 1 4 4 80 3L 4098073 4098091 AAATCTTCCGAGTCTCAGG 58 4097790 4098029 ACGATCGAACGATAGTTGG 59 NA Drosophila melanogaster 50 CG14977 FBgn0035469 FBtr0073158 3 1 1 66 3L 3897079 3897153 ATCTCACAGAGACCATCGA 59 3897182 3897201 TAATCGATGGTGATCCTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13925 FBgn0035291 FBtr0072838 2 1 1 75 3L 1921868 1921887 ATTCTCAAGTTCAGTGTCAG 57 1921922 1922087 CTATCTCATCGACATTTCTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2790 FBgn0027599 FBtr0072409 3 1 1 87 2R 20835324 20835342 TTTATCCTACGCAAGGTGG 59 20835194 20835273 TGACTAAGTTGCGAACCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10904 FBgn0034945 FBtr0072205 3 1 1 60 2R 19857147 19857165 CTGTTATAGAACCACGACC 57 19857042 19857124 TTCGATACCAATTTCTTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30411 FBgn0050411 FBtr0072016 2 1 1 73 2R 19303765 19303783 GAAGATGTTTACCTGACGC 58 19303819 19303901 TAGTTATCGCTGGCTTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18067 FBgn0034512 FBtr0086216 3 1 1 63 2R 16422045 16422063 TGGAGCTTGGATTCTACTG 58 16422090 16422169 TATATTCGCAGCGCTAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp57c FBgn0034509 FBtr0113099,FBtr0086292 1 2 2 78 2R 16391213 16391293 GGTCTCCATACAGAGTCTC 58 16391335 16391353 CTGGCTGATGTTATTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 UbcD10 FBgn0026316 FBtr0089553 1 1 1 60 2R 13676435 13676453 GCATCGAGATCAACTTTCC 58 13676393 13676414 GTCTTAAAGTTAATCTTGGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syn2 FBgn0034135 FBtr0087093,FBtr0087095,FBtr0087096,FBtr0087094,FBtr0087097 2 5 5 86 2R 12443282 12443356 GACGCATTTACAGATGAAGC 59 12443405 12443423 ATGACACCTTCATTCACCC 59 NA Drosophila melanogaster 50 mRpS16 FBgn0033907 FBtr0087578 3 1 1 139 2R 10060919 10060937 AATCATACGTTTCGTACGC 58 10060733 10060751 GTTCGTTGTAATCGTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13353 FBgn0033896 FBtr0087600 2 1 1 160 2R 9978283 9978594 AGGTGTTCATCATAGTGCG 59 9978715 9978736 GATGGTGATGTAAATGAACCAG 59 NA Drosophila melanogaster 50 Cp1 FBgn0013770 FBtr0087592,FBtr0087591,FBtr0087593 3 3 3 168 2R 9849824 9854260 GAATGGCATACGTTCAAGC 59 9854392 9854410 AATCGGCGTACTTATTGAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG33775 FBgn0053775 FBtr0091776 2 1 1 83 2R 8451991 8452011 GCTATATCGTTTCAAGGACTC 58 8451870 8451947 AATGTCGTGGTTATATGGAC 57 NA Drosophila melanogaster 50 CheB42a FBgn0053348 FBtr0086168 1 1 1 214 2R 2837258 2837328 GGTATTTGGTCAAGTCTATCG 58 2837564 2837582 TCAAGTCCAGTTCGTAGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7845 FBgn0033059 FBtr0086023 1 1 1 62 2R 1962596 1962614 TGGACAATGAATACGAGGA 57 1962489 1962570 ACTCATTATCGCTGTCACC 59 NA DesignNoJunction Drosophila melanogaster 50 vlc FBgn0010633 FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039 1 4 4 105 2R 1591797 1591817 CCAGATATCTCCGAAGATACC 58 1591884 1591954 TATTGTGGCAAAGACCCTC 59 NA Drosophila melanogaster 50 CG9253 FBgn0032919 FBtr0081468 3 1 1 258 2L 21143567 21143585 CTCAATGAGGCTTTGTGTC 58 21143807 21144014 TACCAAGGGCTTCAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 Hr38 FBgn0014859 FBtr0081397 3 1 2 150 2L 20688576 20688594 CTTCAATGCCATCAATGCC 59 20688325 20688464 CGAGTTGTAGTTATGTTGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG2493 FBgn0032864 FBtr0081363 2 1 1 60 2L 20462665 20462683 AAACTCTTCGAGACTCTGG 58 20462623 20462641 GGAATGCATCCGATATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10194 FBgn0032790 FBtr0081285 1 1 1 60 2L 19489642 19489723 ATAAGAAATCGCTGGATCCA 58 19489601 19489619 TCGAAGGTTTCTCGTATGG 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)37Cb FBgn0086444 FBtr0081163 1 1 1 115 2L 19126464 19126482 GTACAAGAAGCAACTGCTG 59 19126307 19126385 CGTATTCAGATCGCTCTCC 59 NA Drosophila melanogaster 50 CG10561 FBgn0002036 FBtr0081155 1 1 1 279 2L 19114566 19114642 GCCAAGTTTGGAATTAGACAC 59 19114945 19114963 GTTATCCGCCTGTAGAACC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 BicC FBgn0000182 FBtr0080805,FBtr0080804,FBtr0080803 2 3 3 163 2L 16045385 16045854 ATGTTCAGGTCATATTCTCCAC 59 16046038 16046056 CTCCATCTGGACATTCACC 59 NA Drosophila melanogaster 50 Tap42 FBgn0051852 FBtr0080466 1 1 1 60 2L 13367803 13367822 AGCTAGAAGTTACCGAACTG 59 13367844 13367933 GCAGTCTTCACTTTGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gyc32E FBgn0010197 FBtr0080223,FBtr0112856 3 2 2 81 2L 11141213 11141232 AAGATTCACAAGAAGAGCGT 59 11141089 11141169 TATTCTCATGTCGCACCTC 59 NA Drosophila melanogaster 50 CG5045 FBgn0032229 FBtr0080000 1 1 1 60 2L 10357401 10357422 GAATAATGATACATCAGCCCTC 58 10357498 10357517 TGTATTAGGATGTCTGTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 Akap200 FBgn0027932 FBtr0079664,FBtr0079667 2 2 4 70 2L 8429454 8430290 AACAACAAGGTGGATCTCG 59 8430324 8430342 TCCTGTGTTGTAACGTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG8460 FBgn0031996 FBtr0079586 2 1 1 60 2L 8197810 8197886 GAACGGTTAAAGTGTTTCCC 59 8197909 8197927 AGCTTAATGTCCCGATCAG 59 NA DesignRelaxed Drosophila melanogaster 50 Gs1l FBgn0019982 FBtr0110812 1 1 2 161 2L 4456511 4456734 GCAGATTACGTTTAGGAAACG 59 4456060 4456388 TATATCCTCTCCGTGTCCA 58 NA InUTR Drosophila melanogaster 50 Acp24A4 FBgn0051779 FBtr0110767 1 1 1 73 2L 3693707 3693794 GAAATCTGTGGATTACCCG 57 3693652 3693670 TGAGCATCATAAGACCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8851 FBgn0031546 FBtr0077526,FBtr0077527 2 2 2 69 2L 3521306 3521383 CAGGATCAGAAGTACAAGC 57 3521416 3521434 TATCTCCAGAGTCCCTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3238 FBgn0031540 FBtr0077569 1 1 1 281 2L 3469212 3469230 TATTCTTCACCGGTTCAGC 59 3468897 3468967 TCTCAAAGAACTGTCCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15387 FBgn0031403 FBtr0113015,FBtr0077841 2 2 2 60 2L 2226103 2226122 CTCGAAGAAACTCTCAGAGG 59 2226062 2226082 CTGCATCATGAGAATCATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:HPsi FBgn0011877 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tty FBgn0015558 FBtr0077225,FBtr0077224 3 2 2 100 X 21207803 21207822 AACGATGAGATCTACCTGGA 59 21207428 21207447 CGGGTCATGAGATAGAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089658,FBtr0089660,FBtr0089662 3 3 7 103 X 17824694 17824712 AATTACTTCTATCACCGCG 57 17824461 17824627 AAATGTTGACCTAGTGCAC 57 NA Drosophila melanogaster 50 CG8211 FBgn0030858 FBtr0074480 3 1 1 106 X 17547784 17547868 ATGGAGGTGCTAAGTTGTC 59 17547696 17547714 TTGAGATAGGTCTTCGAGG 57 NA DesignRelaxed Drosophila melanogaster 50 Traf3 FBgn0030748 FBtr0074275,FBtr0074274,FBtr0074273 3 3 3 145 X 16310576 16310596 CCAGTGTCCAGAATATAAGGG 59 16310758 16310836 TATATCCAGCCGTAGAGCA 59 NA Drosophila melanogaster 50 CG32642 FBgn0052642 FBtr0073713 3 1 1 60 X 12853352 12853370 TACTCCTGACATTCGTCCT 59 12853392 12853412 TCACTATACCAATCGTAGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Klp10A FBgn0030268 FBtr0073478,FBtr0073475,FBtr0073477,FBtr0073476,FBtr0073479 2 5 5 152 X 11027593 11027611 TAATGGAAAGGTGCAGGAC 59 11027383 11027477 AGAAGATCGAAGACCTTGC 59 NA Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475 3 6 7 170 X 10173218 10217611 GAAGGTCAAAGAGATGATGG 57 10173067 10173085 AGTCCCATAATGTACAGGG 58 NA Drosophila melanogaster 50 CG1354 FBgn0030151 FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386 1 4 4 96 X 9674840 9674858 CCGAATACGATTCGATGCT 59 9674918 9675202 AAGGCCTCAATATCATGGG 59 NA Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 2 8 8 173 X 6579447 6579465 ACAACGTCTTCCACTACAG 59 6579602 6579683 AATTCGCTGGAGAAGTCAC 59 NA Drosophila melanogaster 50 CG18166 FBgn0029526 FBtr0070096 1 1 2 244 X 374490 374958 CCTCACAAGTGGACTATCG 59 374264 374282 CAATGGCGTTTCCTTAACG 59 NA DesignRelaxed Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131 2 5 5 80 4 370302 370370 GATTCACCGCTTAAAGCAG 59 370240 370259 CTCAGTTGCTAATGCAAGTG 59 NA Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100337,FBtr0100340,FBtr0100339,FBtr0085093 2 4 9 71 3R 22699812 22699830 CATGAATCCTTACTCGGCA 59 22699705 22699723 TTGTAGCCCGTATATGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31099 FBgn0051099 FBtr0084856 2 1 1 121 3R 21135543 21135563 CCTCAAAGCTCTTAATTTCGG 59 21135389 21135407 TCATCATCGTTATGGGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13624 FBgn0039209 FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795 2 6 6 125 3R 20386538 20386624 TAAGGTGTACAAGCACAGTG 59 20386432 20386450 GTCATGTCATTGATGGTGC 59 NA Drosophila melanogaster 50 Plip FBgn0039111 FBtr0084454,FBtr0084453 2 2 2 111 3R 19584916 19584934 CTAAGTTCCTCCTACCAGC 58 19585008 19585089 ATCCGTTCTTCATCATGAGG 59 NA Drosophila melanogaster 50 CG5802 FBgn0038863 FBtr0084017,FBtr0113259 1 2 2 80 3R 16965292 16965420 GTATTTACAGGTGAGGCCA 58 16965463 16965482 AGCTATCAGCGATAAATGGG 59 NA Nonspecific Drosophila melanogaster 50 PKD FBgn0038603 FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592 1 4 4 196 3R 14131625 14132352 AGCAGCTCACTGAATATCC 59 14131447 14131465 GTATTGTACTGGCAGTCCC 59 NA Drosophila melanogaster 50 Taf12 FBgn0011290 FBtr0082442,FBtr0082440,FBtr0082441 3 3 3 71 3R 7504487 7504505 GATCATCGACGACTTTGTC 58 7504434 7504452 TTGTTAGACTTTCGGTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp85a FBgn0037589 FBtr0081849 2 1 1 233 3R 4246001 4246019 GGAAATTCAACTTTGCCGA 58 4245729 4245747 GGAGAGTGAATCGTCTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Osi5 FBgn0037413 FBtr0078595 3 1 1 60 3R 2054319 2054337 GGATGCTGGGTCTTAAGAC 59 2054359 2054379 TACGATATGCTGTGACTAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sec23 FBgn0037357 FBtr0078710,FBtr0078711 3 2 2 106 3R 1476885 1476903 TCGATCGTCAGTTGATTCG 59 1477041 1477059 CATGAATTGCGGGAATAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG10512 FBgn0037057 FBtr0078297,FBtr0078300,FBtr0078298 3 3 4 297 3L 21199477 21199495 GATGCCATTAGGAGGATCC 59 21200564 21200583 CTTCTTCTCCTTGTCTCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Fibp FBgn0036911 FBtr0089595,FBtr0089596,FBtr0089594 1 3 3 97 3L 19809913 19809981 ATACTTACCAGCACACTGG 58 19809834 19809852 TTCCTTGTCGAGTAGACAG 58 NA Drosophila melanogaster 50 Eip75B FBgn0000568 FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149 2 4 4 111 3L 17948398 17948416 AGATGGATATCGTTGGCTC 58 17948140 17948324 TTGAGTATTCCGATCTGCTG 59 NA Drosophila melanogaster 50 CG10741 FBgn0036373 FBtr0075810,FBtr0075811 3 2 2 180 3L 13494144 13494162 ACAGTCCCATTGACATGTC 59 13494305 13494392 ATCGCCATATCTGTAGAGTG 58 NA Drosophila melanogaster 50 stv FBgn0086708 FBtr0075806,FBtr0075809,FBtr0075807 1 3 5 83 3L 13474163 13474181 GACATGGACAACATGTTCC 58 13474228 13474324 GAAACCAAAGTGTGAGTCG 58 NA Drosophila melanogaster 50 Tim13 FBgn0036204 FBtr0076089 3 1 1 164 3L 11767390 11767408 CTTCAAGAAGTGCATCCAG 58 11767244 11767262 ATCTCCAACGATTCCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385 3 8 8 114 3L 9825956 9826035 GAGTTAACCGGGACTACAC 59 9826112 9826131 AGTCTTTCCCAAACTTAGCC 59 NA InUTR Drosophila melanogaster 50 CG33700 FBgn0053700 FBtr0091688 3 1 1 125 3L 9507484 9507567 CCTGTCCATATGATCACGA 58 9507377 9507398 GATATTCCTTGTCAAATGCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 Idh FBgn0001248 FBtr0076673 1 1 9 265 3L 8353429 8353447 CATCCACCTGATTCTCCAG 59 8350919 8350937 TTGGCTCTTAATGGAGTCC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 bin FBgn0045759 FBtr0076900 1 1 1 87 3L 6986012 6986030 CCAATGGATACTACGCCAG 59 6986151 6986170 TAATCGTAGCTAGCAAAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10144 FBgn0035704 FBtr0076986 2 1 1 81 3L 6485923 6485943 GGATTATCAATCTGCTACTGG 57 6485805 6485823 GCAATGAAGTTTAGCAAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG32398 FBgn0052398 FBtr0076988 1 1 1 64 3L 6362060 6362078 TTTGTATATCTGGGCAGCC 59 6362014 6362032 CATTTCTATGGCTTTCGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33353 FBgn0053353 FBtr0086345 1 1 1 62 2R 15653744 15653762 AATACATCGGTTCTCGTCC 59 15653700 15653718 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 aPKC FBgn0022131 FBtr0110997,FBtr0110995 2 2 6 80 2R 10834737 10834755 AGATCCCTATGTGACAAGC 58 10834100 10834694 ATGACATGAGGATCATCTGG 58 NA Drosophila melanogaster 50 Nmda1 FBgn0013305 FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876 2 6 6 91 2R 8765640 8765660 CGAACTTCATATTCTTGGGTC 58 8765511 8765587 CATGAGAACCTCTTTCGGA 58 NA Drosophila melanogaster 50 CG13185 FBgn0033661 FBtr0113072 3 1 2 93 2R 7765780 7765853 CAAAGTAACTACAGAGGCAC 58 7765706 7765724 AACCTCGATGATCTTACCT 57 NA Drosophila melanogaster 50 ix FBgn0001276 FBtr0088154 3 1 1 60 2R 7247105 7247125 TATCCCACTTACTTGAACACG 59 7247065 7247083 TGTCGTGTATATCCTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mef2 FBgn0011656 FBtr0088444,FBtr0088446 1 2 6 169 2R 5806556 5806959 GGATTCAGTTTATCCATCGG 58 5806291 5806309 TTAGATTGGAAGCTCGTCC 59 NA Drosophila melanogaster 50 hig FBgn0010114 FBtr0100119,FBtr0088607 2 2 4 176 2R 5119323 5119341 GGAATGTGAAGTTTCAGCC 59 5118141 5118618 CCCATCCCACATTAATTTCTG 59 NA Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 2 9 9 94 2R 4568146 4568164 AGATCAAGACCTGCTTGTG 59 4568222 4568303 GGTCATATCACGGTAGTCC 58 NA Drosophila melanogaster 50 Vha16 FBgn0004145 FBtr0086150,FBtr0086153,FBtr0086151 2 3 4 81 2R 2519557 2519575 CTTCTTCGGAGTTATGGGA 58 2515389 2515407 GGTACCAGACTTAGCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17528 FBgn0032999 FBtr0111275,FBtr0111277,FBtr0111274,FBtr0111276 2 4 4 83 2R 705644 705728 TGGAATATGTAAGTGGTGGT 58 705580 705598 TAATCATAATGCGCGACTG 58 NA Drosophila melanogaster 50 Ddc FBgn0000422 FBtr0081167,FBtr0081166 2 2 3 71 2L 19119161 19119182 CGAATATCTGGAGAATATACGC 58 19118084 19118102 ATCAATGGCTTCAGGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CycE FBgn0010382 FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775 1 5 5 96 2L 15729492 15729576 ACATTTAGTCGGGAGATGG 58 15729414 15729432 AGATCACTCGGAAGAATGG 58 NA Drosophila melanogaster 50 RfC38 FBgn0028700 FBtr0080225 3 1 1 72 2L 11129720 11129738 GATCGATCTCATCAAGCAG 57 11129666 11129684 AATCACCTTGAATTCCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Btk29A FBgn0003502 FBtr0079616,FBtr0112836,FBtr0079617 3 3 6 168 2L 8298110 8298128 TCGATGGTTTGAGTTGACC 59 8284050 8284128 TTGGAACGGATAACCATCC 59 NA Drosophila melanogaster 50 Gr28b FBgn0045495 FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458 2 5 5 118 2L 7455130 7455213 ATTGTATTTCACGATCAGCG 58 7455031 7455049 TATTGAAGGTCTCACAGCA 58 NA Drosophila melanogaster 50 CG10399 FBgn0031877 FBtr0079351 2 1 1 62 2L 6961369 6961387 GACAAACTGATCCAAGTGG 58 6961413 6961431 CTTGGACTCTGAGGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 halo FBgn0001174 FBtr0077918,FBtr0114554 2 2 2 61 2L 1517929 1517947 AAGATGTCCACCATCAAGC 59 1517886 1517904 ATGTTCTTGATCGTCTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3164 FBgn0025683 FBtr0078153,FBtr0078155,FBtr0100379,FBtr0078154 1 4 4 80 2L 123790 123872 TATTACGATCCTATCATTCCCG 59 123731 123750 TAGGACTTTAGCGAGTACCA 59 NA Drosophila melanogaster 50 CG32857 FBgn0052857 FBtr0070052 1 1 1 102 X 21488281 21488299 GGAGAGCTTGAAGTTCCTG 59 21487146 21488215 CAATTTGGCCAAAGGACTG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG9034 FBgn0040931 FBtr0071343 1 1 1 147 X 9053866 9053942 TTGTGTACCAAGATGTCCG 59 9053737 9053755 CATAGTAGTTGGCCACTCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9657 FBgn0029950 FBtr0071057 3 1 1 66 X 7314073 7314153 ATGTTTATTGTGGCTTCGC 59 7314182 7314201 GATTGAATGCTATAGCCGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG41314 FBgn0085609 FBtr0114053 3 1 1 140 U 1495088 1495106 ATTGAAATACTCGCCACAG 57 1492546 1494984 TATATTGGTCGTTGCTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9682 FBgn0039760 FBtr0085617 2 1 1 118 3R 26077222 26077240 ACAGGAGGTTTCCAATAGC 59 26077382 26077479 TCTTACTGGATTGATTGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG6006 FBgn0063649 FBtr0113476,FBtr0113477 3 2 2 87 3R 11992910 11992930 TTATCTCCGGCTATTTATCGG 59 11992979 11993672 AGCCAAAGACCGAATATGG 59 NA Drosophila melanogaster 50 E(bx) FBgn0000541 FBtr0072522,FBtr0072523,FBtr0072521 2 3 3 87 3L 245466 245936 GAAGGAAAGGGTACGAGTC 59 245397 245418 AGCATATCATCCTCATTATCGG 59 NA Drosophila melanogaster 50 Peb FBgn0004181 FBtr0072454 3 1 1 62 2R 21064122 21064203 TTGATACTCGTCCTTTCTCTG 59 21064080 21064098 CAATTCACTGACAACAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12484 FBgn0086604 FBtr0112774,FBtr0112775,FBtr0112776 3 3 3 91 2R 16355847 16355865 GAAACAGTTGACATACCGG 58 16355920 16356314 GTACCGTAGTCATTCTCCG 59 NA Drosophila melanogaster 50 Psi FBgn0014870 FBtr0087073,FBtr0087072 3 2 3 170 2R 12752526 12752604 AGAATAAGCAGAACGGATCTG 59 12752376 12752396 AATACTGTGCATACTGAGTGG 59 NA Drosophila melanogaster 50 CG1663 FBgn0033449 FBtr0088477 2 1 1 75 2R 5724934 5725010 CATGACTACATCTCGAACC 57 5725049 5725067 AGTACTGAATAACTCCGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cathD FBgn0029093 FBtr0088898 2 1 1 61 2R 3710087 3710105 GGCCACCTCTATTAACCAG 59 3709981 3710062 AAACCACATACTGACCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)01289 FBgn0010482 FBtr0110900,FBtr0086137,FBtr0086136 1 3 4 88 2R 2620509 2620527 CTATTCCGAAATTCCCGAG 57 2620379 2620459 CCTTGTCGTAGAATATAACCG 58 NA Drosophila melanogaster 50 heix FBgn0028375 FBtr0080852 2 1 1 90 2L 16298934 16298954 CCTATTTCGACTTCATCAAGG 58 16298186 16298882 GATACCACCTCATCCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7164 FBgn0031946 FBtr0079487 3 1 1 81 2L 7781832 7781912 TATTCACTCGACCATGAAGTC 59 7781955 7781973 ATTCGGAGTTCCAGATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR31577 FBgn0051577 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-308 FBgn0067696 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG41425 FBgn0085645 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-263a FBgn0067722 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CR32657 FBgn0052657 FBtr0073625 1 1 1 99 X 11981403 11981422 CTTAAATACTCGCCATTGCT 58 11981542 11981560 AGTGTAGTCCAGTCATGGA 59 NA DesignNoJunction Drosophila melanogaster 50 FucTC FBgn0044872 FBtr0111136 1 1 1 75 X 22411741 22411759 GACATTTACGGAAACTGCG 59 22411147 22411165 AGTCAGTGTCCAACATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 fliI FBgn0000709 FBtr0077192 1 1 1 103 X 21214198 21214216 GTTGAGTTCTTTCACCTGC 58 21214281 21214536 AGTATGTAGCAGAAGGTTGAG 59 NA Drosophila melanogaster 50 CG17003 FBgn0031082 FBtr0070035 3 1 1 71 X 19895476 19895494 TTATGGCCAAACACTATGG 57 19895423 19895441 AGAAACCTTCGTAGAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14216 FBgn0031054 FBtr0074747 2 1 1 115 X 19559217 19559295 GATAAACATGATGGCCAAGTC 59 19559372 19559390 GTCGTCAGTAGAAGAGCAC 59 NA InUTR Drosophila melanogaster 50 Arp11 FBgn0031050 FBtr0074760 3 1 1 271 X 19539604 19539673 TTCTTCAAGCATCTACTGGT 58 19539352 19539370 TAGCTCTGATCCTTGAAGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12237 FBgn0031048 FBtr0074761 2 1 1 64 X 19536354 19536373 ATCATCAGTGACTCGAACAG 59 19536309 19536327 CAATCGGCCAAGTTATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Shawn FBgn0031039 FBtr0074738,FBtr0074737,FBtr0074739 1 3 3 116 X 19508311 19508329 TGTTTCCTCTACTGCAACG 59 19508409 19508486 GATGAATGCGTCAATGGTG 59 NA Nonspecific Drosophila melanogaster 50 CG32543 FBgn0052543 FBtr0074638 3 1 1 155 X 18718960 18719045 TTAAATAGCACTTCCTCGGAC 59 18719162 18719180 AGTAAATGAGACTGACGCC 59 NA Drosophila melanogaster 50 Cyp18a1 FBgn0010383 FBtr0074609,FBtr0074610 1 2 2 80 X 18584393 18584411 CTTCGATGGCAAGAATCAC 58 18584228 18584246 GTCTTGATGGTTTCCATGC 59 NA DesignNoJunction Drosophila melanogaster 50 Frq1 FBgn0030897 FBtr0074545,FBtr0100239 2 2 2 149 X 18055313 18061670 ACGGACACATACTTCACAG 59 18062480 18062498 GAGCGATGCGAATTTACTG 59 NA Drosophila melanogaster 50 CG32495 FBgn0052495 FBtr0089800 2 1 3 140 X 17797984 17798002 TATAGCATCGGTCTGTTGC 59 17798106 17798652 GAGTACGAATTTCTGCTGC 58 NA Drosophila melanogaster 50 CG32560 FBgn0052560 FBtr0113438 2 1 2 85 X 17615633 17630235 CTCTACAGTGAACTAGGTGAG 58 17630282 17630300 TCATTCAGCGATGTATCGT 58 NA Drosophila melanogaster 50 RhoGAPp190 FBgn0026375 FBtr0074483,FBtr0074482,FBtr0074481 3 3 3 81 X 17536385 17536403 CGAGGGCATTTATAGGGTG 59 17536257 17536343 CTCAGTATTGGTATCCTCTTCG 59 NA Drosophila melanogaster 50 para FBgn0003036 FBtr0111022 1 1 3 174 X 16375502 16375520 GTACATCTGCCACAAAGAC 58 16374823 16375364 TAATTAGCGACAGCATGAC 57 NA Drosophila melanogaster 50 Cyp1 FBgn0004432 FBtr0074238 3 1 1 60 X 16214214 16214233 AGTTGCAGTTTGGAATTCAG 58 16214173 16214192 AAAGTACTCATCTTTGACGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3632 FBgn0030735 FBtr0112988,FBtr0112990,FBtr0112991,FBtr0112989 2 4 4 94 X 16195703 16195723 CACTATATCCTGTCCAGATGG 59 16195779 16195858 TTTCCTCACGTAGCTTGTG 59 NA Drosophila melanogaster 50 exd FBgn0000611 FBtr0074136,FBtr0074135,FBtr0074137 1 3 3 92 X 15888239 15888257 ATTGGAGAAGTACGAGCAG 59 15888313 15888394 TTTGGTGTAATGGGTCTCG 59 NA Drosophila melanogaster 50 CycD FBgn0010315 FBtr0074163,FBtr0074164,FBtr0074165 3 3 3 61 X 15801699 15801718 GTCTGATGACCGATCTAACC 59 15801595 15801614 CATGTGCAGCATACAATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6308 FBgn0030645 FBtr0074036 2 1 1 71 X 15366368 15366386 ACAGACAGACATCGAACAG 59 15366421 15366439 GAGGTAGAGTCACTGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HDAC6 FBgn0026428 FBtr0074009,FBtr0074010,FBtr0074008 2 3 3 161 X 15230448 15230466 CGAGTACAACGGTTATTGC 58 15230591 15230662 GAGAAGTAAACCACCCTGG 59 NA Drosophila melanogaster 50 CG9009 FBgn0027601 FBtr0073972 2 1 1 76 X 14829956 14829974 CGGATGACTTCATGAGGTC 59 14829468 14829916 CATAAAGAGGGCAATTGGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG14407 FBgn0030584 FBtr0073989 3 1 1 127 X 14732199 14732217 TAGCTGACACTTGAACAGC 59 14732090 14732109 GAATCTGGTATCTCGGATGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 rdgB FBgn0003218 FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194 3 4 4 84 X 13663020 13663039 CTATTATCCGGACAATGGCT 59 13663083 13663187 GTCAATTACGTCTACGATACGA 59 NA Drosophila melanogaster 50 CG11151 FBgn0030519 FBtr0073819 1 1 1 201 X 13633779 13633797 CTTGCTATACGACCATCCC 59 13634050 13634068 TTCTCCTTCAGTCCATCGA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 sno FBgn0005410 FBtr0112849 1 1 4 84 X 13094927 13095640 AGGATGCATGAGTTATGCA 59 13094861 13094879 CTGATTATTCCCGACTCCG 59 NA Drosophila melanogaster 50 CG34411 FBgn0085440 FBtr0112679 1 1 1 80 X 13060223 13061220 CAGCAATCTACAAGGATTACAC 59 13060164 13060182 AGGTTCTTCAAACAAGCGA 59 NA Drosophila melanogaster 50 Tis11 FBgn0011837 FBtr0073683 2 1 2 93 X 12554818 12554837 TGTCTGCTGATATTCTGCAG 59 12554893 12571780 TGATCGTTCATCGTTACGT 59 NA Drosophila melanogaster 50 CG11697 FBgn0030313 FBtr0073511 3 1 1 60 X 11466929 11466947 GTAGCGTCAATGATCTTCG 58 11466971 11466989 GCCACATAAACTCCATAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PGRP-SA FBgn0030310 FBtr0073509 2 1 1 113 X 11456392 11456410 GTATCGTATACGAAGGCAC 57 11456487 11456566 CCGATGGAAGTTTATCCAC 57 NA Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489 3 8 12 101 X 11291934 11292010 GGATATAACCAGAGAACCGC 59 11292074 11292092 GACACATAGATACCCTGGC 59 NA Drosophila melanogaster 50 CG11750 FBgn0030294 FBtr0073456 1 1 1 60 X 11253424 11253442 GCTAGAGGGCTACTATCTG 57 11253466 11253484 AAATTGCCATTGCAGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpt3 FBgn0028686 FBtr0073436 3 1 1 118 X 11019356 11019374 ACATGGACGTACTGATACC 58 11019530 11019606 TTGCAGTTTCTTGTAACGC 59 NA Drosophila melanogaster 50 C901 FBgn0021742 FBtr0073400 3 1 1 214 X 10860494 10860512 CCTATAGACGCAACTTCGA 58 10860172 10860251 CTGGCAATAACCATTCATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG34408 FBgn0085437 FBtr0114584 1 1 4 80 X 10120618 10120636 GGATCTGAATGTTTCGCTG 58 10120680 10121391 ACTAAGGTGTCTGTTTCCC 58 NA Drosophila melanogaster 50 CG34339 FBgn0085368 FBtr0112541,FBtr0112542 3 2 2 132 X 9319487 9366041 GGATCACCAGGTAAATACAC 57 9319374 9319392 TCCCTACATTCCCTTACTC 57 NA InUTR Drosophila melanogaster 50 CG12111 FBgn0030050 FBtr0071232 1 1 1 60 X 8464754 8464772 CCATCGGAGATTGATACCA 58 8464712 8464733 GCTCGATGTAGTAATAGTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11265 FBgn0030049 FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964 3 4 4 142 X 8459066 8459084 ATGATATCGGTCGAAGCAG 59 8459189 8459420 AATGATTCGACCCAGTATCG 59 NA Drosophila melanogaster 50 PIP82 FBgn0024943 FBtr0071235 2 1 1 111 X 8419964 8419983 ATCCCAATCAGAATCCATCG 59 8419797 8419890 TAGCTATTCTCTTCGTCGC 58 NA Drosophila melanogaster 50 otu FBgn0003023 FBtr0071238,FBtr0071237 3 2 3 144 X 8381409 8381623 ACTATAACTTTAAGGTGGGCG 59 8381022 8381303 GGGACCACTATCTCTTTGC 59 NA Drosophila melanogaster 50 otu FBgn0003023 FBtr0071236 1 1 3 141 X 8381020 8381624 GACTATAACTTTAAGGTCCCGT 59 8380900 8380918 AAGACTTGTTGGCCTTACC 59 NA Drosophila melanogaster 50 CG18262 FBgn0030012 FBtr0071158 3 1 1 88 X 8048110 8048128 TTCATGACCTCAATGTCCA 58 8048180 8048198 CTTCTTCCGTTGAAACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2120 FBgn0030005 FBtr0071154 1 1 1 153 X 8030081 8030099 ATTGGAACTTGTGAATGGG 57 8030284 8030302 TTCCGAGAATCTTCTGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CHES-1-like FBgn0029504 FBtr0071079,FBtr0112946 3 2 2 87 X 7580675 7580693 TCAGAATAACCAGGGAGGA 59 7580530 7580625 GATGTTGTGATTCTCCTCAC 58 NA Drosophila melanogaster 50 CG9650 FBgn0029939 FBtr0112959,FBtr0112957 3 2 6 123 X 7126488 7126507 TAAGTTCATCCAGCACAAGG 59 7126591 7126956 TATTGTCGTTCTAAGGCTGAG 59 NA Drosophila melanogaster 50 CG4607 FBgn0029932 FBtr0071014,FBtr0071013 3 2 2 61 X 6964929 6964949 GAAATCCCTCAGATACTTCCG 59 6965440 6965458 CGAATTCCGGTACGTAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32736 FBgn0052736 FBtr0071008 2 1 2 97 X 6905778 6905857 AGACCAATTTCTACCGCAC 59 6905918 6905936 TTAGTTGGTGTTATTCGCG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG3842 FBgn0029866 FBtr0070903,FBtr0070904 2 2 2 60 X 6236588 6236606 GTGAGAAATTTCGTGGAGC 59 6236627 6236648 TATTGATCAGTATATCCAGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5937 FBgn0029834 FBtr0112952,FBtr0070868 2 2 2 107 X 5938567 5938585 CGAACACTTAGGGTGAAGG 59 5938726 5938744 ATTCAAACTGTTGCTGAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4096 FBgn0029791 FBtr0070805 2 1 1 197 X 5598567 5598650 CAACAACTGCATGACTCTC 58 5600595 5600613 GTCATGATGTGCACAATGG 59 NA Drosophila melanogaster 50 snf FBgn0003449 FBtr0070748 1 1 1 94 X 5203548 5203566 GATCTTCAAGGAGATCGGC 59 5203624 5203642 ATTTGGAGTAGGCGATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Xpac FBgn0004832 FBtr0070670 3 1 1 65 X 3997307 3997325 ATCTACACCAAGAAGACGC 59 3997260 3997278 CTCTTCATCGTAGGTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15239 FBgn0029681 FBtr0070612 2 1 1 169 X 3783554 3783573 GATGACCTCTTTGGATTTGC 59 3783853 3783871 CTAAAGCCACCGTAATCAG 57 NA DesignNoJunction Drosophila melanogaster 50 Parg FBgn0023216 FBtr0070585 2 1 1 60 X 3564068 3564088 CAGTCACATCATCAATATCGC 59 3564028 3564046 CAATGTACGCCTTGTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13021 FBgn0029669 FBtr0070570,FBtr0070571,FBtr0070572 1 3 3 60 X 3409536 3409555 AATGTACGAATCGGTAATCC 57 3409578 3409596 ATCCTTCGTCCTTATCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14421 FBgn0029644 FBtr0070554 3 1 1 82 X 2835652 2835670 GAACTTCCAGATCTTCGGT 58 2835716 2835734 TTAACAGATCGGTCAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syx4 FBgn0024980 FBtr0070494 2 1 1 128 X 2636017 2636604 TACTCAATCCGTACACGGA 59 2635841 2635859 TGTGAAGCTCATCCATCTC 59 NA Drosophila melanogaster 50 moody FBgn0025631 FBtr0070341 3 1 1 108 X 1941164 1941183 TTCTCATAATGATCGTGGGC 59 1941008 1941096 ATACAGAGGCTGATGATAAAGG 59 NA Drosophila melanogaster 50 Gr2a FBgn0027796 FBtr0114515 2 1 1 97 X 1347845 1347917 CAATGCTCTGATAACCCAG 57 1347978 1347996 TATAGAGAAGGGTGCAGTC 57 NA Drosophila melanogaster 50 SNF1A FBgn0023169 FBtr0070216,FBtr0070218 1 2 3 80 X 1270211 1270737 GTTGTACCAGGTCATATCG 57 1270781 1270799 ATATAGTCGAACAGCTCCC 58 NA Drosophila melanogaster 50 CG3655 FBgn0040397 FBtr0070181,FBtr0113327 2 2 2 132 X 970325 970475 CAATCTTCAGGTCCATCCC 59 970211 970229 AGTTAGGTAAAGGTGCTGG 58 NA Drosophila melanogaster 50 CG18166 FBgn0029526 FBtr0070096 3 1 2 244 X 374490 374958 CCTCACAAGTGGACTATCG 59 374264 374282 CAATGGCGTTTCCTTAACG 59 NA DesignRelaxed Drosophila melanogaster 50 CG41526 FBgn0085669 FBtr0114116 1 1 1 94 U 3173717 3173735 AAACATTCACCACTCTCCT 58 3173792 3173811 CATGTATGTGGACTACTGAG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41500 FBgn0085660 FBtr0114105 3 1 1 141 U 1956963 1958156 GACTCATTAAGCATCTATACCG 58 1958257 1958276 AGTCCTTTCACAATCAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17471 FBgn0039924 FBtr0100543,FBtr0100544 1 2 2 80 4 1216413 1216482 AAGCAATACCATCCGTACG 59 1216351 1216372 TACAGTGATACGATACATTCCC 59 NA Drosophila melanogaster 50 pho FBgn0002521 FBtr0089204,FBtr0089205 1 2 2 99 4 1194714 1194793 ACAATACAGACTCGACTGG 58 1194633 1194651 TTACAACCCTTATGTGGGC 59 NA Drosophila melanogaster 50 sv FBgn0005561 FBtr0100344,FBtr0100342,FBtr0100343,FBtr0089327,FBtr0100345 2 5 7 90 4 1128889 1128908 ACGTCTATGCTTTACGACAG 59 1128961 1129108 AACCTGTTCCAATGGAAGG 59 NA Drosophila melanogaster 50 mGluRA FBgn0019985 FBtr0089184 2 1 1 80 4 964872 964942 TCTGATCGCAATACAGGTG 59 964985 965004 CGGTCTGGGTAATAGAATCG 59 NA Drosophila melanogaster 50 snoRNA:Psi28S-3305c FBgn0082974 FBtr0113593 1 1 1 60 3R 24429115 24429133 TGTTAGAGCGTCGATAGAG 58 24429157 24429175 TCGTCAGTTGATCTCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or98P FBgn0067407 FBtr0085225 3 1 1 60 3R 23670834 23670852 ACCTATTGCTCAGGATCTC 58 23670875 23670894 CATGCCATACTCAAAGTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycG FBgn0039858 FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799 3 5 5 97 3R 27426466 27426484 ACTTCCACATCAAGGAGTC 58 27426317 27426407 ATCAGGAATCCTCATGTACTG 58 NA Drosophila melanogaster 50 CG11334 FBgn0039849 FBtr0085808,FBtr0085809 3 2 2 272 3R 27286574 27286650 AAGCATAGATTTCTGGACG 57 27286254 27286272 GTAAGGACGAGTCTCTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 zfh1 FBgn0004606 FBtr0100269,FBtr0085701,FBtr0085702 3 3 3 284 3R 26611407 26611426 TATTAAGCTGCCCGATTACC 59 26611741 26611759 CACTCTATGCACTGGTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11313 FBgn0039798 FBtr0085724 1 1 1 91 3R 26556351 26556371 GGGATCACTGATCAATAATCG 58 26556227 26556299 CTCTGAAAGAGACATCTCCT 58 NA Drosophila melanogaster 50 Ptp99A FBgn0004369 FBtr0100523,FBtr0085423,FBtr0085422,FBtr0110981 2 4 5 107 3R 25297479 25297497 TGTGTTCCACATACACGAC 59 25297567 25298891 GTGTAGGGTCGTAAGTTCTG 59 NA Drosophila melanogaster 50 CG14509 FBgn0039647 FBtr0113303,FBtr0113304 3 2 2 148 3R 25004532 25006889 CAGAGTTCGATTATGCCAG 57 25004402 25004420 GTCATAGTGATTGGTGACG 57 NA Drosophila melanogaster 50 CG14516 FBgn0039640 FBtr0085382,FBtr0085383 3 2 2 95 3R 24969481 24969502 CAAGGGTTCAACTATTATTCGC 59 24969558 24969639 TTGTAAGCCATTTCCTGCA 59 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 1 8 8 120 3R 24962131 24962214 CCAATGATAAGCCCTACTCC 59 24962294 24962315 CCCATGAACATATAGGTTTCAC 58 NA Drosophila melanogaster 50 CG6599 FBgn0039513 FBtr0085166 2 1 1 80 3R 23187088 23187169 GAGTCTTCAGATAAAGATGGC 58 23187211 23187229 TATCAAGGTGTCAATGCAC 57 NA Drosophila melanogaster 50 CG5484 FBgn0039450 FBtr0085037,FBtr0085039,FBtr0085038 2 3 3 106 3R 22544580 22544653 ATGCATAAGGATTGGTCCC 59 22544723 22544741 TATGTGATGTAGCCCATGG 58 NA Drosophila melanogaster 50 CG6452 FBgn0039438 FBtr0085054 3 1 1 77 3R 22451953 22451971 ACTTCGTCAAGTACAGGAC 58 22451894 22451912 CTCCCAGGTTATCGTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ald FBgn0000064 FBtr0114544,FBtr0085000 1 2 6 91 3R 22082687 22082705 AAGAAGGAGAACATTGCTG 57 22082305 22082325 GATCCAGCTGTATAGTTACCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG6142 FBgn0039415 FBtr0084987 2 1 1 87 3R 21962197 21962215 GGAACCCAATTTCATGCAG 59 21962320 21962338 AGGCTTCGATCTAGAAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14546 FBgn0039395 FBtr0084984 2 1 1 60 3R 21747123 21747142 ATCCTACGCGGTTTAATCAG 59 21747082 21747102 CTAGATGAGCTGCTTCTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0113385,FBtr0084927 2 7 7 110 3R 21527327 21527345 AACCAGGTCCACAAATCTG 59 21527166 21527253 GACATAGATGACGCTTGCT 59 NA Drosophila melanogaster 50 CG13656 FBgn0039307 FBtr0084817 2 1 1 89 3R 21094998 21095018 ACCTACTACAGGCTCTATCTC 59 21095069 21095171 CATTTGTTGTTAGCCGGTC 59 NA Nonspecific Drosophila melanogaster 50 CG13654 FBgn0039290 FBtr0084805 2 1 1 80 3R 21038189 21038264 GAGTGGTCGATGGTATGTG 59 21038308 21038326 TTAACGCTCTCCATGATGG 59 NA Drosophila melanogaster 50 CG13652 FBgn0039284 FBtr0084781 1 1 1 94 3R 20986659 20986677 GTCATCTCCTAGTCGTTGG 59 20986735 20986753 ACTGGACATTAGAGAACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34027 FBgn0054027 FBtr0100082 1 1 1 80 3R 20929919 20929991 CTGACCAAGATGATGAGTC 57 20929857 20929876 CATATCATCGACACTTGGAC 58 NA Drosophila melanogaster 50 CG33095 FBgn0053095 FBtr0100204 2 1 2 232 3R 20925151 20925169 GGACACAAATGTCAAACGG 59 20925846 20925864 CGTTCGACTTCATATCGGT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG11791 FBgn0039266 FBtr0113283,FBtr0084762 2 2 3 142 3R 20877259 20877277 TCTACAATTGCCTGAGTCC 58 20878307 20878327 CTTCAATTCTGGAGGTATCAC 58 NA DesignNoJunction Drosophila melanogaster 50 Hr96 FBgn0015240 FBtr0084756 2 1 1 87 3R 20851913 20851932 GCATTTGATCGACTATCCAG 58 20852050 20852133 TTTGGTGAATACTGTCAGC 57 NA Drosophila melanogaster 50 CG13646 FBgn0039255 FBtr0084751 2 1 1 160 3R 20774500 20774518 TAGCTGATAACTTGCTGCA 58 20774642 20774796 TTTGAAGGAGAGGGATTCC 58 NA Drosophila melanogaster 50 CG11069 FBgn0039244 FBtr0084712 2 1 1 80 3R 20721540 20721613 GTCAGAGATCCTGTCATGC 59 20721655 20721675 AATGGATATCAGCAGATAGGC 59 NA Drosophila melanogaster 50 CG6995 FBgn0039229 FBtr0084699,FBtr0084700 3 2 3 95 3R 20646481 20646830 ACAGATGAAGATCATGGAGTC 59 20646887 20646905 CGCTTACGATCAGTAACGT 59 NA Drosophila melanogaster 50 CG5463 FBgn0039153 FBtr0084584 2 1 1 81 3R 19954274 19954292 CTGATAAATCTCCAGGCAG 57 19954152 19954229 GTTCGATTAGCTCACTGAC 57 NA Drosophila melanogaster 50 CG13604 FBgn0039137 FBtr0113277 3 1 4 144 3R 19816969 19817778 TCCAACTCAACCATCTCAC 59 19816843 19816861 GACGAAGTTCCCAATTGGA 59 NA Drosophila melanogaster 50 Gdh FBgn0001098 FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498 1 4 4 96 3R 19763339 19763461 AAGCTAAGATCATTGCCGA 59 19763261 19763279 TACAGATCGGGAATGACCA 59 NA Drosophila melanogaster 50 CG10184 FBgn0039094 FBtr0084481 3 1 1 170 3R 19429481 19429564 TTCTGTACGAACAAGGTGG 59 19429329 19429347 AGATATTGTGGGTCTGCTC 58 NA Drosophila melanogaster 50 Irk2 FBgn0039081 FBtr0084425 2 1 2 114 3R 19344262 19344281 CAATCCTCAATCCTATCCCA 58 19341197 19344185 GAAATTGCGAGATCTGCAG 59 NA Drosophila melanogaster 50 orb FBgn0004882 FBtr0084385,FBtr0084384,FBtr0100227 3 3 5 167 3R 19094013 19094120 TTCACCTTTAGTCAGCGAC 59 19093864 19093882 TTTGCCAAACTAAGTCCCA 59 NA Drosophila melanogaster 50 CG31365 FBgn0051365 FBtr0084406 2 1 1 105 3R 18950843 18950861 GTGGTCGTGTTTAATCTGG 58 18950696 18950714 GCTCATCTCTATCGTTCTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG31158 FBgn0051158 FBtr0113395,FBtr0113396 2 2 2 80 3R 18430801 18430882 CAAGCTGATGCTGAAAGAG 58 18430926 18430944 TTCTTGTGCTCGTTAAGCT 59 NA Drosophila melanogaster 50 CG7084 FBgn0038938 FBtr0084202,FBtr0084201 1 2 2 87 3R 18128384 18128492 CTATATGGGCGATACGTACG 59 18128542 18128560 ATACACAATGATGGGCAGG 59 NA Drosophila melanogaster 50 r-l FBgn0003257 FBtr0084038 2 1 1 176 3R 16898333 16898351 TCTCCTTTCTGCTGAACAC 59 16897511 16897530 TCTCGTAGGTCAGTTTAGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12278 FBgn0038847 FBtr0084003 1 1 1 60 3R 16869959 16869977 TCCCAAGAAATCAGCACTC 59 16869998 16870019 ACTGTAGTACGTAGTACAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15690 FBgn0038825 FBtr0083957 2 1 1 60 3R 16581099 16581117 TTCTCCTACTTCGGAAACG 59 16581141 16581159 TAAAGAACGAAGTCTCCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11407 FBgn0038733 FBtr0083790 2 1 1 82 3R 15607737 15607807 TCCAGTCATTCCTTAACCA 57 15607853 15607871 GTTACAGTGGTAAGCAGAC 57 NA Drosophila melanogaster 50 CG6184 FBgn0038725 FBtr0083802,FBtr0083800,FBtr0083801 2 3 3 87 3R 15479275 15479357 CCAAGGAATTTAAGGACTACGA 59 15479209 15479227 TACACCAGTTCGTACTCCT 59 NA Drosophila melanogaster 50 Dys FBgn0024242 FBtr0083765 3 1 8 158 3R 15308359 15310765 ATTGCAATTGTCGTGAGTC 58 15310887 15310905 ACGATCATCCAGATTCTGG 58 NA Drosophila melanogaster 50 CG34284 FBgn0085313 FBtr0112480 2 1 1 61 3R 14728338 14728357 AATTGGCTTTATCCCATTGC 59 14728296 14728314 CTTGTGAAGATCGACACCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7720 FBgn0038652 FBtr0083678,FBtr0083679 2 2 2 111 3R 14594466 14594484 TCATCTACGGCATGATGAG 58 14587720 14594391 CTCTTGAACCTGAGATCGA 58 NA Drosophila melanogaster 50 fru FBgn0004652 FBtr0083641,FBtr0083643,FBtr0083645 1 3 13 90 3R 14340833 14340851 GAACATCGAAACGGATGTG 59 14261500 14340779 GTCAGTGTTGTACCTAGGG 58 NA Drosophila melanogaster 50 CG7669 FBgn0038607 FBtr0083576 1 1 1 115 3R 14188639 14188658 TGCCAGTGATAACAGTAGTG 59 14188736 14188809 TAGCAGTAAGTGGTTGCTG 59 NA Drosophila melanogaster 50 14-3-3epsilon FBgn0020238 FBtr0083567,FBtr0083565,FBtr0083566,FBtr0083568 1 4 4 80 3R 14073561 14073579 TATTGCCATGAACGATCTG 57 14073622 14073709 ATCTCATAGTAGAACACCGA 57 NA Drosophila melanogaster 50 CG14313 FBgn0038579 FBtr0083615 2 1 1 83 3R 14017127 14017145 CACCTTTAGCATCATGCAG 58 14017062 14017080 TAGCTGACGTTGTTCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12321 FBgn0038577 FBtr0083616 1 1 1 60 3R 14014304 14014322 GTTTCTAAAGGACAAGCGT 57 14014262 14014280 GCTCGGTATGATTACTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7713 FBgn0038545 FBtr0083513 2 1 1 80 3R 13621623 13621725 GGTAGCCTACAATATCTATTGC 58 13621766 13621784 TCAATGTTCGGATTCTGGA 58 NA Drosophila melanogaster 50 Keap1 FBgn0038475 FBtr0083423,FBtr0083424,FBtr0083422 2 3 3 83 3R 12901902 12901979 AAATTTCACTCAGGTGTGC 58 12901837 12901856 AGTTCATCCCTTCGTATCAG 58 NA Drosophila melanogaster 50 CG10405 FBgn0038431 FBtr0110773 2 1 1 159 3R 12280831 12280849 CACTACGGTACTGACAGTC 59 12281349 12281367 GATTCCGATAAGGGTTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5903 FBgn0038400 FBtr0083281 1 1 1 80 3R 11971672 11971690 TACAACTTCATCAAGGGCG 59 11971610 11971628 GTACTTAAGGTCCTCCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5404 FBgn0038354 FBtr0083165 3 1 1 81 3R 11531789 11531809 GCATTGAAGAGTCGAATATGG 59 11531848 11531924 CGGTCCAATAACTCTAGTAAGAG 59 NA Drosophila melanogaster 50 CG6125 FBgn0038337 FBtr0083105,FBtr0083106 1 2 2 86 3R 11229093 11229169 CTTAAACAGCATGAATCCACG 59 11229027 11229045 CTCAGATCGTAGTGCATCG 59 NA Drosophila melanogaster 50 CG5044 FBgn0038326 FBtr0083090,FBtr0083091 1 2 2 94 3R 11183940 11183959 GGGATTCTAGAGAATCTGCA 58 11184280 11184298 GTAACCTTCATCGAGGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089959 1 1 12 99 3R 11126777 11126795 CAACACCCGTCTAAAGGAG 59 11128937 11130910 GATCATCTCGTCTTCGAGC 59 NA Drosophila melanogaster 50 CG3610 FBgn0038266 FBtr0082994 3 1 1 60 3R 10671505 10671523 CGTAGAGATCTAATGGCCC 59 10671546 10671565 TTCGATGATCTTGTATCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)L1231 FBgn0086686 FBtr0082975 1 1 1 103 3R 10471316 10471334 GTATTTGCGAGAACAGCTC 58 10471109 10471250 TGCTATATCATCAGCATCGT 58 NA Nonspecific Drosophila melanogaster 50 primo-2 FBgn0040076 FBtr0091746,FBtr0091745 3 2 2 150 3R 9537064 9537082 ATTCGACTACATCTTCGCC 59 9536741 9536953 ACCAATGTCATAATAGGGATCC 59 NA Nonspecific Drosophila melanogaster 50 flfl FBgn0024555 FBtr0114604,FBtr0082817 2 2 2 161 3R 9513944 9514076 AAGATATGTCAGGTGCAAGG 59 9514200 9514218 TATCGTTTCCGAGATGTCC 58 NA Drosophila melanogaster 50 flfl FBgn0024555 FBtr0114604,FBtr0082817 2 2 2 161 3R 9513944 9514076 AAGATATGTCAGGTGCAAGG 59 9514200 9514218 TATCGTTTCCGAGATGTCC 58 NA Drosophila melanogaster 50 CG14377 FBgn0038148 FBtr0082756 2 1 1 148 3R 9223599 9223617 TCATCTGTTTGACCCTGTG 59 9223729 9223747 GTAGGTGGAGTATGATGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GstD3 FBgn0010039 FBtr0082570 2 1 1 61 3R 8199308 8199326 GTGGGATTCGACATTAGCA 59 8199351 8199369 ATCTTCTTGACATGGTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 3 15 15 123 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811939 7812029 GGTTCTTCAGGATGTTGGA 59 NA Drosophila melanogaster 50 CG6923 FBgn0037944 FBtr0082432,FBtr0082433 3 2 2 109 3R 7571158 7571176 CTACTCACCACTGCATCTG 59 7571003 7571088 GCTCAATAGTTTCCAAAGTAGC 59 NA Drosophila melanogaster 50 Csk FBgn0086903 FBtr0082447,FBtr0082446,FBtr0082444,FBtr0082448,FBtr0082445 3 5 5 85 3R 7460836 7460854 AAATCAGACATGTGGAGCT 58 7460708 7460787 TCGGCTAATGGAATTCTGG 59 NA Drosophila melanogaster 50 dpr5 FBgn0037908 FBtr0082395,FBtr0082394 1 2 2 222 3R 7330267 7331006 CAACTCGAATTCTGACAGC 58 7331192 7331210 CATCGAACATAAGTTGCCG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG17734 FBgn0037890 FBtr0082360 1 1 2 108 3R 7068559 7068577 GAGTACCTGTTCGACAAGG 59 7068209 7068227 TAGCCGATGTCATCTTGTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG6666 FBgn0037873 FBtr0082372 2 1 1 60 3R 7035051 7035071 AATGGTATTAGGCATCTCCTC 59 7035011 7035032 AGTAAACCTCCTTGATCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9458 FBgn0037765 FBtr0082152 1 1 1 60 3R 5644911 5644931 TACATCACTATCGTTCAGCTC 59 5644871 5644889 GGGTGTAGATACTATGCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SpdS FBgn0037723 FBtr0082079 3 1 2 83 3R 5457948 5457966 CAGCCTTATCGATGGAGTC 59 5458013 5458107 TAGGTTTCGCTGAAAGACG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 SpdS FBgn0037723 FBtr0082079 1 1 2 80 3R 5457953 5457973 TTATCGATGGAGTCATCTAGG 58 5458014 5458109 CATAGGTTTCGCTGAAAGAC 58 NA InUTR Drosophila melanogaster 50 DppIII FBgn0037580 FBtr0081841 2 1 2 160 3R 4170700 4170718 CAATCTCCAGAAGTTTGGG 58 4170911 4170929 GAGATTCTCGAAGGCACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10903 FBgn0037543 FBtr0081787 2 1 1 145 3R 3856791 3856873 GAAATATTCCACAAACACCCG 59 3856980 3856998 CAAGAACGCTACCTGAGAG 59 NA Drosophila melanogaster 50 Prat FBgn0004901 FBtr0081764 3 1 1 60 3R 3736863 3736882 GGTACATACGACACATGGAG 59 3736822 3736841 TTCGTTGTTAACAAGCTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199 3 14 15 133 3R 1100031 1100465 GAGCACAACGTATTTGGTG 59 1099916 1099934 TACATATTCTCGCCAGTCC 58 NA Drosophila melanogaster 50 uta FBgn0037302 FBtr0078826 3 1 2 155 3R 1062632 1062650 TTCCAGGAGGGTCTTAGTC 59 1062495 1062514 TAGCATTTCCTCTTACTCCC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 cpx FBgn0041605 FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897 1 5 15 192 3R 110112 120843 ATTAAGTGCCGTTAAAGGC 58 120999 121298 GATGTTGTACTTATCGCGA 57 NA DesignRelaxed Drosophila melanogaster 50 Gel FBgn0010225 FBtr0078971,FBtr0078968,FBtr0078973,FBtr0078972,FBtr0078969 1 5 5 135 3R 66120 66138 TCAATACGAGCAAGAGGAC 59 66237 66319 AAAGTAAAGCTTTGCCGTG 59 NA Drosophila melanogaster 50 CG14448 FBgn0037191 FBtr0078534 1 1 1 60 3L 22782076 22782094 ACACAATTACCTCTTTCGG 57 22782118 22782136 CTGCATGTTACTGATCTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12546 FBgn0037178 FBtr0078541 1 1 1 60 3L 22686851 22686869 TGTTCTTTCCGTCCTAGGA 59 22686809 22686827 TGTAGATGTGCTGCTACTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14457 FBgn0037174 FBtr0100669 1 1 2 91 3L 22671741 22671759 TTTGGAACTGATTGTGCTG 58 22671814 22672166 CTTTGATGTAATCTGGCGG 58 NA Drosophila melanogaster 50 CG33772 FBgn0053772 FBtr0091773 2 1 1 89 3L 22645004 22645022 ATGTTAGGGACTGGAACAG 58 22644900 22644918 ATGTGGCCACTTGATATCG 59 NA DesignNoJunction Drosophila melanogaster 50 RpLP0 FBgn0000100 FBtr0078481 1 1 1 66 3L 22069391 22069409 GTTAGGGAGAACAAGGCAG 59 22069439 22069531 ACTCATCGAACAGTTCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 sa FBgn0002842 FBtr0078401 2 1 1 88 3L 21399044 21399062 CATCGAGGTGATAACCCAC 59 21398679 21398697 CGAAATTTCCTGAGGATGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG10585 FBgn0037044 FBtr0078287 2 1 1 158 3L 21021858 21021876 ATTGATAGTGCTCCTGGTG 59 21021998 21022195 TTAACCACGCTATTGTGCA 59 NA DesignRelaxed Drosophila melanogaster 50 schuy FBgn0036925 FBtr0074899 1 1 1 60 3L 19981045 19981063 AATCAGTCGCTACACTTCC 59 19981086 19981105 TTGTAGTTTAGGCTTCACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Paps FBgn0020389 FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885 2 6 6 94 3L 19853427 19853509 TAGACAGCATGGAGATCCT 59 19853566 19853585 AAACTCATCCTTCCTCTTGG 59 NA Drosophila melanogaster 50 HLH106 FBgn0015234 FBtr0074873,FBtr0074875,FBtr0074874 1 3 3 102 3L 19790266 19790285 GTCTTCACGTACGATCTGAG 59 19790347 19790437 CTCGATATTGCTTAATGACGTG 59 NA Drosophila melanogaster 50 CG8786 FBgn0036897 FBtr0074962 1 1 1 88 3L 19635049 19635067 CCATCTGTTTGCAAACCTG 59 19634304 19634999 CTTATAAGCAACACCCTTCAC 58 NA Drosophila melanogaster 50 CG14087 FBgn0036868 FBtr0074996 2 1 1 60 3L 19382794 19382813 TCTATTGCTTAGGATTGCTG 57 19382836 19382854 TAGAAGCTTGTTTGAGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rept FBgn0040075 FBtr0074988 3 1 1 60 3L 19249656 19249675 GATCGCATGATCATCATACG 58 19249697 19249716 TTAGGATCTCCTTAACCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Indy FBgn0036816 FBtr0075083,FBtr0075082,FBtr0075081 1 3 3 86 3L 18824243 18824263 GTGGAGTACTGTAATCTACAC 57 18824113 18824195 GAGGCCAAAGTGTAATCTG 58 NA Drosophila melanogaster 50 Cyp12c1 FBgn0036806 FBtr0075091 2 1 1 60 3L 18678557 18678575 CAGGGAATTGGGACTACTC 59 18678515 18678535 CTTGAACAGTTTACTAGCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6322 FBgn0036733 FBtr0075209 3 1 1 60 3L 17506562 17506583 ACTACTTCGATCTAGAGATGGA 59 17506523 17506541 TCAAATTCCTCAAGGAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32185 FBgn0052185 FBtr0075174 2 1 1 60 3L 17488009 17488027 AATACTGATCCTCGTGTCC 58 17488050 17488069 ATATGGTTGACGATAGGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scaf6 FBgn0053522 FBtr0100596,FBtr0091474 3 2 2 172 3L 17035131 17035211 AACAAGCTCTGCTAAAGCA 59 17034977 17034995 TTGCATATTGTCTTGTGCG 59 NA Nonspecific Drosophila melanogaster 50 CG12436 FBgn0036637 FBtr0075401 2 1 1 116 3L 16522762 16522780 TTCAATACGAGTGCCAAGG 59 16522613 16522631 ATTTAAGTCCCACAACGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13071 FBgn0036585 FBtr0075461 1 1 1 204 3L 16255941 16256033 TCAAGCTGTTCGTATTCCT 58 16256201 16256219 TAGATCCAGCCATATCCAC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 GXIVsPLA2 FBgn0036545 FBtr0075509,FBtr0075508 3 2 2 172 3L 15948605 15948623 AACTGCATATACCAGTGCC 59 15948822 15948840 CAGATATCGTGGTCATTGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG6878 FBgn0036488 FBtr0075643 2 1 1 100 3L 15155061 15155079 CATATAGAGCCGGTGAACC 59 15155142 15155161 TTCATCTTATCGAAGCACGT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7003 FBgn0036486 FBtr0075646 1 1 1 80 3L 15148021 15148039 AATCGTATGGCTTTAACGC 58 15147899 15147979 CTTTCTTGGAAAGCTCATAGG 58 NA Drosophila melanogaster 50 CG3020 FBgn0036464 FBtr0075670 1 1 1 80 3L 15009976 15009994 CAATCCCATTTGGAACGAG 58 15009707 15009932 ACCACATAGATCTCGATGG 58 NA Drosophila melanogaster 50 CG7768 FBgn0036415 FBtr0075736,FBtr0075737 1 2 2 60 3L 14211795 14211813 GCCAATACCAATGGATCTC 57 14211837 14211855 TATTATCCAGCCATGTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9028 FBgn0036389 FBtr0075759 1 1 1 181 3L 13961789 13961865 GGAATCTGGATTTCAGCCA 59 13962010 13962028 TTCAGTGTTCATGGAGGAG 58 NA Drosophila melanogaster 50 Atg1 FBgn0010715 FBtr0075945 1 1 1 80 3L 12781718 12790790 TCATGGAGTATTGCAATGG 57 12781656 12781674 AGAGTCTAACGGTATCCTC 57 NA Drosophila melanogaster 50 Atg1 FBgn0010715 FBtr0075945 2 1 1 80 3L 12781718 12790791 GTCATGGAGTATTGCAATGG 58 12781657 12781675 GAGTCTAACGGTATCCTCG 58 NA Drosophila melanogaster 50 CG10632 FBgn0036302 FBtr0114611 1 1 4 112 3L 12533237 12533498 ATGTCTACAAGGCCAATCG 59 12533143 12533161 CTTTGCATACTCACTGCTG 58 NA Drosophila melanogaster 50 Pi3K68D FBgn0015278 FBtr0076088,FBtr0076087 1 2 3 80 3L 11769208 11769291 CGTACTTACTGTGATGATACAC 58 11769149 11769168 CACTTCACATATGTGTTGGG 58 NA Drosophila melanogaster 50 CG6024 FBgn0036202 FBtr0113164,FBtr0113165,FBtr0113166 3 3 3 91 3L 11752784 11752802 GCTAATCCTCATCGGACTC 59 11737115 11752729 GCGACTGCATGTAATAGTG 58 NA Drosophila melanogaster 50 CG11658 FBgn0036196 FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127 3 5 5 186 3L 11694739 11694757 TAATGGTCTCAGTGAGGCT 59 11694509 11694589 GCTGTCATTTACATGCGAG 59 NA Drosophila melanogaster 50 CG7368 FBgn0036179 FBtr0110884 2 1 1 182 3L 11596183 11596201 CAATATGCAACTGTTGCGT 59 11596347 11596449 ATTCTGGAGTACTTGCTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Mob1 FBgn0036172 FBtr0089331,FBtr0089330,FBtr0089333,FBtr0089332 1 4 4 158 3L 11520315 11520333 CTAGTGGATCTTCCAGCTG 59 11518604 11518688 TAAGTACGTTCTGTTGCCG 59 NA Drosophila melanogaster 50 scyl FBgn0041094 FBtr0076169,FBtr0076168 3 2 2 60 3L 11247415 11247433 AGTTCATGAAGAGTTTGGC 57 11247455 11247475 TTCTTGGTGATCGTATACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14149 FBgn0036105 FBtr0076269 1 1 1 60 3L 10872477 10872495 GAATCCAATGGCATGATGG 58 10872519 10872537 CGAAACTGTCTGTGAAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32066 FBgn0052066 FBtr0076278,FBtr0076277 3 2 2 241 3L 10640104 10640122 CTACGAGCATTCCATGGAG 59 10634813 10634831 TATTCTCCGTGGAATCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32062 FBgn0052062 FBtr0113420 3 1 5 128 3L 10575214 10580742 CGGAGTGTATACTATGATCCC 58 10580986 10582464 AGCAGTGGCATTTAATATGG 58 NA Drosophila melanogaster 50 CG3529 FBgn0035995 FBtr0076461 1 1 1 106 3L 9442915 9443129 GGTAAGTAAATCGACGAAAGAG 58 9443359 9443377 ATTTGTCAAACTCCGAGCT 59 NA Drosophila melanogaster 50 CG4461 FBgn0035982 FBtr0076452 2 1 1 63 3L 9368679 9368697 GTATCTGTGGGACGATTCG 59 9368724 9368742 GAGTAGGTCACTTCTGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5021 FBgn0035944 FBtr0076514,FBtr0076513 2 2 2 142 3L 8960602 8960685 TTTGAGTCAAAGAACAGTCG 58 8960790 8960808 ATCATTACCAGCAGTAGCC 59 NA Drosophila melanogaster 50 CG6683 FBgn0035902 FBtr0076655 1 1 1 60 3L 8507618 8507637 CATTTGAAATTCCTGCAGCA 59 8507577 8507595 TCAGATCACCCGAATTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13671 FBgn0035867 FBtr0076706 1 1 1 60 3L 8295215 8295234 TCTGGGATATCTATGAACGG 58 8295256 8295275 TTGTTGAACTCCCTTAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13685 FBgn0035816 FBtr0076809 1 1 1 64 3L 7741167 7741185 AATCTCAAAGCTGACGAGG 59 7741213 7741231 AAATTATACATGCGCACCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 smid FBgn0016983 FBtr0076851 2 1 2 99 3L 7375349 7375367 GAAACAGATGACCAGGGAG 59 7375429 7375500 AATGATCGAGAATGCTTGGT 59 NA Drosophila melanogaster 50 dikar FBgn0052393 FBtr0076954,FBtr0076953 3 2 2 173 3L 6734106 6734124 CTCGATGACAACTTTCTGC 58 6733868 6733887 ATCCTGGTAGAGATTCTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32397 FBgn0052397 FBtr0076985 1 1 1 70 3L 6558069 6558504 ATTACGTCAGCAATGACGT 59 6558017 6558035 TCTTCCTCCGTAGTAGGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG6600 FBgn0035672 FBtr0077046 1 1 1 60 3L 6063672 6063693 TACTGGATCTCTTTAAGTCACC 58 6063711 6063732 CAGATAACAATAAGCAGCAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pole2 FBgn0035644 FBtr0077081 3 1 1 60 3L 5889892 5889911 AAGAGGGCAAGTTCTATGTC 59 5889851 5889870 GCTCCAGTGAGATCTAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5568 FBgn0035641 FBtr0077025 3 1 1 60 3L 5865395 5865414 CACCATTAGCAATAGTCACC 58 5865487 5865506 AATAATCGAGCTATCCACGG 59 NA DesignNoJunction Drosophila melanogaster 50 sif FBgn0085447 FBtr0112712,FBtr0112708,FBtr0114646 2 3 8 117 3L 5661232 5661800 ATCTATTGAGTTCGTTCAGG 57 5661880 5661898 ATGCAGGTGATGTTAACAG 57 NA Drosophila melanogaster 50 CG11347 FBgn0035542 FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141 2 6 6 226 3L 4419447 4419465 TATTAGGTCCACCCAGGAG 59 4419654 4419749 TGTTCTTGCTCTTCTGACTC 59 NA DesignRelaxed Drosophila melanogaster 50 Fit1 FBgn0035498 FBtr0073209,FBtr0073210 3 2 2 60 3L 4105483 4105501 ATTCCTCAAGCCTCAAAGG 59 4105524 4105543 CCTGTAGGTGAAGAAGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133 3 5 11 193 3L 3578466 3593333 ATTGCAGATATGGAGACTGG 59 3593487 3593507 CTGTTTGTTCAGAAAGACCTC 59 NA Drosophila melanogaster 50 CG11526 FBgn0035437 FBtr0073083,FBtr0073084 1 2 2 103 3L 3322982 3323000 TACTTCAAGGCCAATTACG 57 3322830 3322915 GATATTAGAGCAGCGATGG 57 NA InUTR Drosophila melanogaster 50 CG32281 FBgn0052281 FBtr0073034 1 1 1 60 3L 3169513 3169534 GTCCAGATTGAAGGATTTAACG 59 3169553 3169573 CATGTTTCGAAAGTAGTGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32306 FBgn0052306 FBtr0072894,FBtr0072892,FBtr0072893,FBtr0072895 2 4 4 83 3L 2464050 2464068 TGAAACTACCGCAGATCAC 59 2464115 2464133 AGTAGTGATCCATGGACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1275 FBgn0035321 FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906 1 4 4 62 3L 2253685 2253787 GTATGGCAACTCCATTCTG 58 2253641 2253659 AGCTTCAGAGTCTTCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG15822 FBgn0035308 FBtr0072917 1 1 2 74 3L 2154776 2156645 AACAGGAAAGAGTGTCGTG 59 2154720 2154738 CTTCCACTGTCATGGAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 Aprt FBgn0000109 FBtr0089421,FBtr0089420 1 2 2 80 3L 1884237 1884331 TACGGTATTGACACCTTTGAG 59 1884177 1884195 GGCTAGTAGATCGTCAACG 59 NA InUTR Drosophila melanogaster 50 alphaCop FBgn0025725 FBtr0072812,FBtr0072811 2 2 2 60 3L 1643933 1643954 TATGGTGGTCTTTAAACTGGAG 59 1643894 1643913 GAGAATATTCCCGTGGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12104 FBgn0035238 FBtr0072825 2 1 1 63 3L 1601689 1601708 CAAATGCAAGTGATAGTGCA 59 1601645 1601663 CATAGACGTTCTTCTGCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cct1 FBgn0041342 FBtr0072741,FBtr0072739,FBtr0072738,FBtr0072740 1 4 4 113 3L 1551789 1551870 CTATGTGGACGAGATCGTC 59 1551947 1551965 ATGCCATCGGTTACATACG 59 NA Drosophila melanogaster 50 CG9149 FBgn0035203 FBtr0072667 2 1 1 61 3L 1303940 1303958 TCGAGGGTATACAGAAGCT 59 1304043 1304061 ATTGCCAGCGGTTATAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13912 FBgn0035186 FBtr0072625 3 1 1 70 3L 1190005 1190023 ATCACAGGTACTTGACCTC 58 1190057 1190075 GGAATTCTGTCGAGAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13902 FBgn0035166 FBtr0072595 3 1 1 60 3L 840786 840804 TTAACCCGAGTAACCTCCA 59 840744 840762 ACTCTTCTAGACTGGGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 klar FBgn0001316 FBtr0072565,FBtr0112808 2 2 4 183 3L 452993 453011 CATCACCACAATGACACCT 59 451762 452846 ATTTCAGTATGTCGCCTCC 59 NA Drosophila melanogaster 50 CG13884 FBgn0035138 FBtr0072568 1 1 1 91 3L 366256 366274 ACTACAATCATGGTGGCTC 59 366183 366202 ATAACTTCCAAATAGCGGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34454 FBgn0085483 FBtr0112760 2 1 1 60 3L 232210 232228 TTTCGAAACATCTCGTAGC 57 232168 232187 CGAAATTGGTATTGACGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gyk FBgn0025592 FBtr0072530,FBtr0072529 3 2 2 156 3L 202532 202550 TTCAATCCGACCTAGTAGG 57 202335 202353 GATGGCTTTATGGCTTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CR30082 FBgn0050082 FBtr0087321 1 1 1 151 2R 11573147 11573167 CGATTGTACATCTGAGTTCTG 58 11572862 11573035 GTACTTGGCATTTGTAAACG 57 NA Drosophila melanogaster 50 CG30429 FBgn0050429 FBtr0072450 2 1 1 60 2R 21134353 21134371 ACGATGACATGAAATGTGG 58 21134395 21134413 CCAAAGTAGACACAACCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL39 FBgn0023170 FBtr0072185 2 1 1 106 2R 19949797 19949816 CAAGTCGTTCAGAATAAAGC 57 19949505 19949729 TAGCGTTGTAACGAATAGTG 57 NA Drosophila melanogaster 50 CG5602 FBgn0034922 FBtr0072132 3 1 1 96 2R 19778247 19778321 AGTTCCTAAGATTGATGCGA 58 19778380 19778398 CATAGGTTCTACCTTGGGC 59 NA Drosophila melanogaster 50 CG9850 FBgn0034903 FBtr0100329 2 1 2 123 2R 19647293 19648385 CCATAACCAAACTCGATATGTG 59 19646068 19646086 CTGTTCACCTTCTCCAGTC 59 NA Drosophila melanogaster 50 CG9876 FBgn0034821 FBtr0071979 1 1 1 254 2R 18981234 18981252 GAACTCAGTAGCAACTTCG 58 18978215 18978413 AAACCAGACCTGAACTCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 inaD FBgn0001263 FBtr0071909 1 1 1 87 2R 18745183 18745201 CATAGTAACTACGCCGACG 59 18745060 18745133 CTCGATCGATCTCATAACCC 59 NA Drosophila melanogaster 50 CG30274 FBgn0050274 FBtr0071888 3 1 1 60 2R 18713363 18713381 GTTCCAAGAGTTCTTGGTG 58 18713405 18713423 ATCAGCATCGATACTCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30266 FBgn0050266 FBtr0071887 3 1 1 128 2R 18711273 18711291 TGCAAAGAACGACATATCG 58 18711436 18711456 CCGTCATTATCCGTAATTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG30268 FBgn0050268 FBtr0071877 2 1 1 80 2R 18601080 18601152 CATAATTGCTGAGTTCGAGG 58 18601193 18601213 ATATCAAGGGACTGAGATAGC 58 NA Drosophila melanogaster 50 Obp59a FBgn0034766 FBtr0071869 3 1 2 61 2R 18590571 18590591 AGGAGATGAATATGGTAGGTG 58 18590613 18590632 CTTCTCTGAAGGATTTCGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4554 FBgn0034734 FBtr0071833 1 1 1 80 2R 18378870 18378888 CTGATTCGCAATATACGCT 57 18378931 18379011 AAACATAGCCGTTCTTATGC 58 NA Drosophila melanogaster 50 CG10344 FBgn0034729 FBtr0071840 3 1 2 170 2R 18313878 18313896 ATACATGTGGGTCATCCAC 59 18313668 18313687 TTCTTTGCTCTCCTTAGTGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG10494 FBgn0034634 FBtr0071699,FBtr0071700 3 2 2 98 2R 17405516 17405534 TTCAATGACAGTGACGAGG 59 17405377 17405397 CCGAATGATGAGTAGAAACGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG13423 FBgn0034513 FBtr0086217 3 1 1 60 2R 16424977 16424995 CCTGAATGATATGACAGCG 58 16425019 16425037 TAGATTCACCGTACAGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10822 FBgn0034478 FBtr0086339 1 1 1 60 2R 15839049 15839070 GTTACGTGGAAGAAGTATTTCG 59 15839091 15839109 ATCAATATGTCCTCCACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp56g FBgn0034474 FBtr0086343,FBtr0086342 2 2 2 84 2R 15671154 15671174 CGAACTTTAAGGATGTCATCG 59 15671090 15671108 ATCTTGAAGGCAGTGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp56e FBgn0034471 FBtr0086327 2 1 1 78 2R 15600067 15600085 TCAAACAGGAGGGAATCAC 59 15600126 15600145 TTTACCTTTGGATCGGAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Topors FBgn0034410 FBtr0086570 3 1 1 173 2R 14861591 14861611 GAGCTGATGAATTACTACCAG 57 14861746 14861831 CTGAGCAGGATTGTTTCTG 58 NA Drosophila melanogaster 50 CG15096 FBgn0034394 FBtr0086633,FBtr0086632 2 2 2 112 2R 14697626 14697644 TATTCTTTGCCCTTACGGT 58 14697466 14697550 CGACCAATTATACTCGGGA 58 NA Drosophila melanogaster 50 CG33958 FBgn0053958 FBtr0114576,FBtr0099994 2 2 2 80 2R 14074503 14074521 TCCATTAATCGTGGATTGC 57 14074345 14074459 AACTAGGTATCGCCATACG 58 NA Drosophila melanogaster 50 CG17680 FBgn0062440 FBtr0086781 1 1 1 173 2R 14035292 14035310 TAACCTAAGGATCCTGCAG 58 14035137 14035155 TTCTCCTCCAGAAAGTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 stau FBgn0003520 FBtr0086783,FBtr0086784 2 2 2 111 2R 14007613 14007631 AAACAACACGGAGAGTAGC 59 14007460 14007539 GAAGTTGACCTCAAAGTCCA 59 NA Drosophila melanogaster 50 CG30456 FBgn0050456 FBtr0086980 2 1 1 113 2R 12993700 12993782 TACTTTACTAGTATCCGCCTG 58 12993857 12993875 ATTAATGAACTGCGTGAGC 58 NA Drosophila melanogaster 50 CG30098 FBgn0050098 FBtr0087168 1 1 1 114 2R 12242539 12242557 ATAACAGATTCGCATGTGG 57 12242324 12242342 GACGAATCGTATTCACCCA 59 NA DesignNoJunction Drosophila melanogaster 50 Nox FBgn0085428 FBtr0112650 2 1 1 80 2R 12199780 12199798 CTATGTGATCTGCGGTGAG 59 12199842 12199925 TTATCGAGGATCCCTCTGG 59 NA Drosophila melanogaster 50 CG7786 FBgn0034096 FBtr0087190 3 1 1 100 2R 12122337 12122355 GAACAATCCGTCCTACTCC 59 12122255 12122274 GTAGAGTTTCCGACGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mlf FBgn0034051 FBtr0087292 1 1 4 94 2R 11826017 11826035 TGACTGTGTAATCCAGGAG 58 11824075 11825959 GTGGATGTATGCTGTTCTG 58 NA Drosophila melanogaster 50 Ranbp11 FBgn0053139 FBtr0087278 3 1 1 60 2R 11574675 11574694 CGATATGAGCAGGTAATGTG 58 11574715 11574735 TGTACATGGTAATCCTTTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30471 FBgn0050471 FBtr0087333 3 1 1 137 2R 11423920 11424004 TTCTTTACCATCAGTGGCT 58 11424105 11424123 CAATCTCAGGTAGCGATGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG8090 FBgn0033995 FBtr0087404 2 1 1 83 2R 11087678 11087696 CTGAATCCTTCCAAACCCA 59 11087554 11087631 TTGATTGATGTCTTCGCCA 59 NA Drosophila melanogaster 50 CG33506 FBgn0053506 FBtr0091446 2 1 1 94 2R 10745457 10745476 TATGGTTTACACCATGGGTC 59 10745320 10745338 GACCCAGAATGCTGTAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34442 FBgn0085471 FBtr0112746 3 1 1 106 2R 10255105 10255189 ACATTATATTCAGTCCCAGCAG 59 10255256 10255274 TTTGGTATACGTGGAGCAC 59 NA Drosophila melanogaster 50 CG13018 FBgn0040751 FBtr0087581 3 1 1 119 2R 10044828 10044846 GATCTCAAGATGTGCCTCC 59 10044727 10044745 CTCGTAGAAGGTATTGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6329 FBgn0033872 FBtr0087634,FBtr0087633,FBtr0087635,FBtr0087636 1 4 4 140 2R 9717361 9718064 TGCATACAAGTGACCACTG 59 9718168 9718186 TTTGTCCTTCAGATGCTCC 59 NA Drosophila melanogaster 50 Mp20 FBgn0002789 FBtr0005009,FBtr0087745 1 2 2 81 2R 9134626 9134644 ATCAACAACTTCCAGAAGG 57 9134689 9134707 TCTTCTCGTACAGATCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13326 FBgn0033794 FBtr0087779 2 1 1 132 2R 9017613 9017686 AATCAGACACTAGCGATGC 59 9017499 9017518 TAAGATTCTCGCTCATCACG 59 NA Drosophila melanogaster 50 CG3955 FBgn0033793 FBtr0087780 1 1 1 264 2R 9016193 9016211 AAAGGGTGAACAAACTGTG 58 9015878 9015896 CAGGAATAGAGCTTGGTCC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835 3 6 8 110 2R 8504608 8504626 CCTGCATATTTACCCACTG 57 8504697 8505312 GACGTCTACCATTCTAAATCTG 58 NA Drosophila melanogaster 50 CG30056 FBgn0050056 FBtr0087823 1 1 1 105 2R 8449868 8449888 GAGATCCTGATTAACCATCAG 57 8449955 8449973 GATCGGAGATGGACATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33626 FBgn0053626 FBtr0091603 1 1 1 92 2R 8297919 8297937 GATATGGTTCAGGGAACCA 58 8297993 8298072 ATAGTAAATGGTACCCGGG 58 NA Drosophila melanogaster 50 Cpr49Ad FBgn0033726 FBtr0087955 1 1 1 89 2R 8278730 8278748 TTCGTTCATTACACCCGAG 59 8278599 8278678 ACACCATCATAGGTGATCAC 59 NA Drosophila melanogaster 50 CG30047 FBgn0050047 FBtr0087905 2 1 1 96 2R 8241483 8241501 TAAGGACTCCGTATCTGTG 57 8241560 8241636 CAATAGTATCCTCGATCGTG 57 NA Drosophila melanogaster 50 RpS11 FBgn0033699 FBtr0088005,FBtr0088007,FBtr0088006 3 3 3 127 2R 8087085 8087348 CTGTGTTCAGAGATGTTGAG 58 8086977 8086996 CTTCTTGAAGCTCTTCTTGG 58 NA Drosophila melanogaster 50 CG33964 FBgn0053964 FBtr0100005 2 1 1 100 2R 8070834 8070852 GAACTACTTGACGGACCAG 59 8070916 8070934 ATAGGTCTTCTATGGCCAG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 MCPH1 FBgn0033664 FBtr0088055,FBtr0088056 2 2 2 82 2R 7785976 7786066 CAAACTACTCAACAGGATAAGC 59 7785915 7785933 TACCATTGGTTCCCATCAG 58 NA Drosophila melanogaster 50 Mtor FBgn0013756 FBtr0088033 1 1 1 149 2R 7746852 7746870 GAGAACAACCAGAGTCAGG 59 7746983 7747057 AATCTCCACAGAGCTTTCG 59 NA Drosophila melanogaster 50 iotaTry FBgn0015001 FBtr0088125 2 1 1 60 2R 7244374 7244393 GTGTCTATTCAGATCAGTGC 58 7244413 7244434 TGATCTCCTTGCTATAGATGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13217 FBgn0033590 FBtr0088194 3 1 1 247 2R 7124007 7124025 TGACACTCTTGGAATTGGA 58 7123778 7123796 GAACTTCTTGCCGAATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11883 FBgn0033538 FBtr0088284,FBtr0113063,FBtr0088283 1 3 3 90 2R 6527408 6527427 AATCATACAAGTTGTGCGTC 58 6527480 6527561 TCATCATCCATCAGCACAG 59 NA Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 3 12 12 93 2R 6499952 6500255 GCATATGGACATGTATAACTCG 58 6500309 6500327 ATTCGTATAGTGCGGTTCC 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0089353 1 1 26 163 2R 6419735 6419753 GGACATGACAATGGAGGAG 59 6405693 6419549 AGGTTAGTACGAAATCTTGGG 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 2 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421092 TAGTAAGGTAGCAAAGTAGGG 58 NA Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414 3 10 10 73 2R 5991854 5991872 TGTCGACAGTCGATAAGGA 59 5991906 5992234 CATATCATCGTAACGTTCTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0088416,FBtr0088419 3 2 10 72 2R 5994288 5994975 CACTTAGCTAAACAGGCGT 59 5995011 5995029 AGTCCTTGTAGGAGTCCTC 59 NA DesignRelaxed Drosophila melanogaster 50 lectin-46Cb FBgn0040092 FBtr0088475 3 1 1 213 2R 5703154 5703224 AAAGATGAACTGGTTTGGC 58 5703401 5703419 ATAGTTGCTGTAGTAGCGC 59 NA DesignNoJunction Drosophila melanogaster 50 trpl FBgn0005614 FBtr0088471,FBtr0088472,FBtr0088473 1 3 3 81 2R 5649774 5650241 CTTCCTGTTCATCTTGATTCTG 59 5650283 5650301 CTTCTTCATCCTGGTCGTC 59 NA Drosophila melanogaster 50 CG1868 FBgn0033427 FBtr0088543,FBtr0088542 1 2 2 106 2R 5469713 5469731 GGCATTCGATGATCTAGAC 57 5469570 5469643 AAGTGCCTCCATCTATCTC 58 NA Drosophila melanogaster 50 shrb FBgn0086656 FBtr0088623 2 1 1 88 2R 5030496 5030572 TCAGAATATGGACGTGGAC 58 5030426 5030444 AAATGGCATCGGAAATCTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG8788 FBgn0028955 FBtr0088581 3 1 1 87 2R 5027790 5028948 TACTTCTACATCATGTGGCG 59 5028997 5029016 CTTTAGACACGGATCAGGAC 59 NA InUTR Drosophila melanogaster 50 CG18659 FBgn0027561 FBtr0088627 2 1 2 86 2R 5013708 5014540 ATTTGCAATACTAATCCGGC 58 5013527 5013545 GAATCCCTTATAGGCGGTC 59 NA Drosophila melanogaster 50 CG8746 FBgn0033330 FBtr0088714 2 1 1 66 2R 4680367 4680386 GACATACGACTTACTCTCCC 58 4680415 4680433 GAGTTCATTCTGGGTTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30375 FBgn0050375 FBtr0088799 1 1 1 100 2R 4153820 4153838 GTCTTCCCATTAGACAGGC 59 4153681 4153699 CAGAGTGTTCGACTTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12822 FBgn0033229 FBtr0088842,FBtr0088841 3 2 2 158 2R 3719998 3720016 GACATTGAGACGATAACCC 57 3720138 3720215 ATAATTGCTCTGACCTTGG 57 NA Nonspecific Drosophila melanogaster 50 phr FBgn0003082 FBtr0088839,FBtr0088838 3 2 2 60 2R 3713282 3713300 CAGTTTCTTACCCACTTGG 57 3713324 3713342 AGAACTCCTGTATGTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 esn FBgn0028642 FBtr0089039,FBtr0089038 3 2 2 161 2R 3012688 3012927 TGCGATGAGATCATCTTCTC 59 3013051 3013069 GAACATTGTGTCGAAGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG15237 FBgn0033104 FBtr0086212 2 1 1 144 2R 2696943 2696961 CCATACCCGGAATTGAGAC 59 2696750 2696768 TTCATCTGAATGTCGTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15909 FBgn0033090 FBtr0086122 1 1 1 60 2R 2570913 2570932 CCTATAATGAGGTCGTGCAG 59 2570955 2570973 TTCAGATAGACAACTGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12551 FBgn0033045 FBtr0086048 3 1 1 87 2R 1808648 1808666 GAAGGTTCCAAGCATTCAC 59 1808717 1808735 CTTTCTTTGACGACTCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10417 FBgn0033021 FBtr0086092,FBtr0086091 2 2 2 80 2R 1249152 1249172 AAGAGTCCTGATACTTCATCC 58 1249043 1249112 ATCCTCATTACCATCTTCGTC 59 NA Drosophila melanogaster 50 CG33347 FBgn0053347 FBtr0086090 3 1 1 125 2R 1243034 1243052 TTTAATCTGGAGGGACCAG 58 1243141 1243159 ATAATAGGATACTGCGCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17715 FBgn0041004 FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246 1 6 6 93 2L 22742091 22742164 ATAATGATCATGGCGGGTG 59 22742219 22742239 TTATGGTGTTTCCTAGTCCTG 59 NA InUTR Drosophila melanogaster 50 CG3262 FBgn0032986 FBtr0085953,FBtr0085954 1 2 2 60 2L 22240691 22240711 TTTCTCTTCCGTTAGACTCAC 59 22240733 22240751 ATTACAACAGGCACTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycK FBgn0025674 FBtr0085942,FBtr0085941 3 2 2 60 2L 22129323 22129341 TGCAGACCATCAAATTCGA 59 22129281 22129300 GCGTACTTTAGGAGAAAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1416 FBgn0032961 FBtr0085903,FBtr0085904,FBtr0085905 3 3 3 114 2L 21759359 21760490 AAGAAACTTCATCCAGCAC 57 21760568 21760586 GTCTGTTTGATGCTATGCC 58 NA Drosophila melanogaster 50 crc FBgn0000370 FBtr0100139,FBtr0081512 1 2 3 89 2L 21312033 21312106 CTTTGCAAATGGCATTACTC 57 21312158 21312176 ATCTCCTCATCACTAAGCA 57 NA Drosophila melanogaster 50 rtGEF FBgn0015803 FBtr0081357,FBtr0112885,FBtr0081356,FBtr0112884 2 4 4 80 2L 20355989 20356088 CATACTGGATAAGTACAAGGAC 57 20356129 20356147 GTGAGCACAAGTAATCCAG 58 NA Drosophila melanogaster 50 CG10237 FBgn0032783 FBtr0081207,FBtr0081209,FBtr0081208 2 3 3 92 2L 19437120 19437677 GTCTTCTAGAAGCGGAGAC 59 19437046 19437064 TTTCCGGGTAATACTTGCA 58 NA Drosophila melanogaster 50 hkl FBgn0086441 FBtr0081145,FBtr0081144 1 2 2 106 2L 19047789 19047807 ACCTTGCATATACTGGCTG 59 19047965 19047983 CCTCCCGTTCCTTAATACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31739 FBgn0051739 FBtr0080919 1 1 1 162 2L 16827878 16828058 ATCCTTTCAACATGGGTGG 59 16828182 16828202 GACAGCTCAACAAATAATCCG 59 NA Drosophila melanogaster 50 CG31816 FBgn0051816 FBtr0080868 2 1 1 60 2L 16542677 16542696 ATAAGCAGACCAAAGAATGG 57 16542716 16542737 GTGGTAAGATTATCCTTAGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876 3 7 7 169 2L 16472183 16472201 GAATATTCAGAGCCTGCTC 57 16469244 16471862 TCTGGTAAAGCACTCTCAG 58 NA Drosophila melanogaster 50 yuri FBgn0045842 FBtr0080711,FBtr0100613,FBtr0080712 2 3 7 174 2L 15261626 15261725 TGGAAATTGAATGCGATACG 58 15261471 15261491 GTCCTAAACGTTGTAGTTGTG 59 NA Drosophila melanogaster 50 CG3994 FBgn0028516 FBtr0080715,FBtr0080714 2 2 2 221 2L 15230349 15236617 TGGTGAATGTCATCATGGG 59 15230146 15230164 TTTGGTAGGAGAACGTTGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 vig FBgn0024183 FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720 3 4 4 85 2L 15065447 15066946 GATAGAACTGGTGTGAAGTC 57 15065381 15065399 ACATCATCAATAGCCTCCT 57 NA Drosophila melanogaster 50 CG7532 FBgn0028915 FBtr0080640 1 1 1 219 2L 14349764 14351458 GATATGTTCCGTTTGTTGGT 58 14349495 14349513 TCATGAAGCCAAGGAACTC 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 bgm FBgn0027348 FBtr0080590 1 1 1 80 2L 14015965 14015984 ACAATTATGGCGACTATCCT 58 14016024 14016142 GCTCATATTGTTTGTAGGTGAC 59 NA Drosophila melanogaster 50 DnaJ-H FBgn0032474 FBtr0080494,FBtr0080493 2 2 2 82 2L 13164329 13164348 TTTACCTTCATGGGTCTCAG 59 13164154 13164172 TTCTTGTCGTCCCTTATGG 58 NA DesignNoJunction Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020 3 17 17 87 2L 12723993 12724013 AAGACCTATCAGATCAGACAG 58 12724062 12724215 ATTTGAGCACCTTAATGCC 58 NA Drosophila melanogaster 50 rho-6 FBgn0032415 FBtr0080359,FBtr0080360 1 2 2 195 2L 12130996 12131014 GTGGTCTATATGGTGGGTG 59 12130751 12130772 CATCGCTGAGTAACAATATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6766 FBgn0032398 FBtr0080308 3 1 1 87 2L 12040191 12040273 CAGAGTTGTCTCCAATTACTC 58 12040124 12040142 ATTTCGTACGACCAGTAGG 58 NA Drosophila melanogaster 50 CG12264 FBgn0032393 FBtr0080290 2 1 1 60 2L 12000812 12000830 CATGTCATCAGGAATGGTG 58 12000854 12000872 CAAACGACAAATTCAGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31705 FBgn0028490 FBtr0080244,FBtr0080243,FBtr0080242 1 3 3 74 2L 11524599 11524617 TGTTTACTATCCACAGGCG 59 11524475 11524493 AATGCTCCAGCGATAAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 lectin-33A FBgn0040096 FBtr0113317 2 1 1 60 2L 11002518 11002536 CGAAGAGGATTGTGTTGGA 59 11002556 11002578 CTCTATATCGTGATACCCAAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7300 FBgn0032286 FBtr0080125,FBtr0080126 3 2 2 60 2L 10695948 10695969 GAAGCTGGTCATCTAAATATCC 58 10695909 10695927 TAGATGCAGCTTGAGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17107 FBgn0032281 FBtr0080107 2 1 1 288 2L 10681992 10682010 TGAAGTTCCTGGCTATCTG 58 10682262 10682280 TATCCATGTCTGCCATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5091 FBgn0032234 FBtr0080005 2 1 1 146 2L 10381312 10381385 TTTCATTTCAAGTGCACGAG 59 10381493 10381512 CCAACAATTCATCTCTTGCT 58 NA Drosophila melanogaster 50 CG13139 FBgn0032230 FBtr0080002 1 1 1 158 2L 10365531 10365549 GATCGCCCTAATGAATTCC 58 10365671 10365779 AGCATGAATCTGAATGCTC 57 NA Drosophila melanogaster 50 CG4953 FBgn0032204 FBtr0079984 2 1 1 87 2L 10267722 10267802 CTCTATTGCATCAAGCCCA 59 10267853 10267871 AGACGATGTCCAGTTTACC 58 NA DesignRelaxed Drosophila melanogaster 50 gcm2 FBgn0019809 FBtr0079838,FBtr0079837 1 2 2 82 2L 9611429 9611447 TAGCAAGGTTCTTAAGCGT 58 9611493 9611570 TGCCACAGGCATTATACTG 59 NA Drosophila melanogaster 50 CG32982 FBgn0052982 FBtr0079771 2 1 3 167 2L 9127415 9127433 CACAACCATGAATCGTGAG 58 9154756 9156506 ACAAAGTATCGCTCCTTCC 59 NA Drosophila melanogaster 50 fu12 FBgn0026718 FBtr0079704,FBtr0079703 2 2 2 61 2L 8450610 8450631 GTGATAATGAACCACCAAAGTG 59 8450570 8450588 ATCACAGGCCACAAATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Peritrophin-15a FBgn0040959 FBtr0079713 3 1 1 293 2L 8396054 8396072 CAATTGCACCATGAAGTCC 59 8395708 8395726 TGCAATCAACAGTAAGCAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG8419 FBgn0031999 FBtr0079589 3 1 1 81 2L 8208386 8208457 ACTTGATTTGGAGAAACGC 58 8208502 8208520 TACATCAGCACCAATCTCG 59 NA Drosophila melanogaster 50 cup FBgn0000392 FBtr0079298 1 1 1 92 2L 6665778 6668346 AAACGGAGTTCCAAGATCC 59 6668402 6668420 AGTCTTCGTCGTTGTAACC 59 NA Drosophila melanogaster 50 CG31635 FBgn0051635 FBtr0113410,FBtr0079326 3 2 2 127 2L 6640198 6640369 CTCGTCAATTTATGCCGTG 59 6640089 6640107 TCCAAGCTATGGTTGTAGC 59 NA Drosophila melanogaster 50 CG11320 FBgn0031837 FBtr0113026 3 1 1 139 2L 6617359 6617437 ATAACCGTGCACCATAAGG 59 6617177 6617195 ATTATCCAAAGCGGTTGGA 59 NA Drosophila melanogaster 50 Gef26 FBgn0021873 FBtr0079249 2 1 1 86 2L 6325594 6325722 AGCATGGATAGTCTTACCG 58 6325772 6325790 TACTTCCACATCTTCCTCG 58 NA Drosophila melanogaster 50 cl FBgn0000318 FBtr0079095 3 1 1 137 2L 5520502 5520520 CAAGGACGAGAAAGGAGAG 59 5520694 5521147 AAATCCTTCCAGTATGCCC 59 NA Nonspecific Drosophila melanogaster 50 Bsg25D FBgn0000228 FBtr0079085,FBtr0079084 2 2 3 99 2L 5274074 5274092 GATTCCAAGGATGAAGCCA 59 5273565 5273583 ATGTTTCCGAAGTGGTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Bsg25D FBgn0000228 FBtr0079083 1 1 3 144 2L 5275753 5276943 GAGTTCAGCAATTGGAGAC 58 5275627 5275645 AATGCCTTAGTTAGCTGCT 58 NA Drosophila melanogaster 50 Marcal1 FBgn0031655 FBtr0078992 3 1 1 93 2L 4957676 4957755 GACTGGAATCCTAGCACTC 59 4957812 4957830 TGTGAGCAATCAGATAGCG 59 NA Drosophila melanogaster 50 CG2837 FBgn0031646 FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403 2 4 4 164 2L 4904903 4904923 GTTTACTCCAATATACCACCG 58 4904700 4904721 CTTGTTGAACGATTGATCATCC 59 NA DesignNoJunction Drosophila melanogaster 50 mRpS2 FBgn0031639 FBtr0077408 2 1 1 66 2L 4849666 4849684 CCAACCTGATCACCTATCC 59 4849618 4849636 TTGCAATAGAGCTCCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3714 FBgn0031589 FBtr0077481 2 1 6 91 2L 4190819 4193322 ACGATGTTAAGAGGAGTGG 58 4190746 4190764 GTCGATTCGAATTCCAAGC 59 NA Drosophila melanogaster 50 for FBgn0000721 FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305 1 4 10 179 2L 3626210 3634250 ATGTCATGGAAGATGGACG 59 3626049 3626067 TGATGGTCTGAAAGCACTG 59 NA Drosophila melanogaster 50 CG8853 FBgn0031550 FBtr0077529 2 1 1 242 2L 3531823 3531842 TTTGAACAATGAGCTCAAGC 59 3532399 3532417 GTGTCATCCTTCAGTTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3332 FBgn0031514 FBtr0077608,FBtr0077609 1 2 2 82 2L 3276462 3276540 GATAACGGGCATGATCCTC 59 3276398 3276417 GATTGTCCAGATCCATCGAG 59 NA Drosophila melanogaster 50 colt FBgn0019830 FBtr0077734,FBtr0077732,FBtr0077733,FBtr0077731 3 4 4 69 2L 2769058 2769077 CAAGCTATACAAGGAGGGTG 59 2769008 2769026 CAAATCCCTGAGCATTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15387 FBgn0031403 FBtr0077841 3 1 2 70 2L 2226060 2226078 TGATTCTCATGATGCAGCA 59 2225951 2225969 CCCATGACCCTTAATGACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14352 FBgn0031351 FBtr0077876 3 1 1 61 2L 1612340 1612358 TCTCGAAGCGGAAATACTC 59 1612383 1612401 CTTAGGATGAAGCCTTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lectin-21Cb FBgn0040106 FBtr0078046 1 1 1 60 2L 620647 620665 TGTACTTAATCCGCAAGCA 59 620605 620623 ACCAGATTGCTAATGTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31974 FBgn0051974 FBtr0078150 1 1 1 80 2L 141443 141462 ATTACAACGCCTTCATTCAG 58 141327 141401 CCTCTTCGAGAAACAATTCG 58 NA Drosophila melanogaster 50 CG1724 FBgn0031164 FBtr0077257 1 1 1 64 X 21073783 21073801 CAGAACGATCTAGGCAGAG 59 21073737 21073755 TTAATATCGCCTGATCCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1835 FBgn0031127 FBtr0077277,FBtr0077278 2 2 2 111 X 20539514 20540148 GCAATTGTGTTTCTATGGCA 59 20540222 20540240 GACTGTTGTCTCTACTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9572 FBgn0031089 FBtr0070006 3 1 1 230 X 20044240 20044259 TTGTCTATAGAGATCCGGTC 57 20044813 20044831 GATTAACGCAGCGATTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Cdc42 FBgn0010341 FBtr0074751,FBtr0074752 2 2 2 232 X 19592047 19592066 GCTCATCTCGTATACAACCA 59 19592261 19592340 ACTTCTCCTTGACGTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 B-H1 FBgn0011758 FBtr0074430 2 1 1 254 X 17295640 17295658 GTACCTTAGCGTTCAGGAG 59 17296010 17296028 ATGTCTATGTTCGTGTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 PGRP-LE FBgn0030695 FBtr0074183 3 1 1 161 X 15695627 15695717 AGTGCTTCCACATTGAGTC 59 15695484 15695503 TGAAGCATCCAATGAAACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG8128 FBgn0030668 FBtr0074053 2 1 1 72 X 15592705 15592795 CAAGAGCATACTCGTCCTC 59 15592831 15592849 GCAAATCGATCCGTAATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6340 FBgn0030648 FBtr0074038 2 1 4 139 X 15377319 15377337 AACAATAACTATGGCAGCG 58 15377440 15378567 TTTGACTCATCAATGCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Grip128 FBgn0026433 FBtr0074075,FBtr0100271 1 2 2 138 X 15362477 15362559 GATCACGGATTCCTGTCTG 59 15362357 15362376 GTTTGGTCGGGATTATAGGT 59 NA InUTR Drosophila melanogaster 50 CG11092 FBgn0027537 FBtr0073828 2 1 1 91 X 13718172 13718190 GGTAAAGCTTGAGGGTCAG 59 13718245 13718336 ACAATACGACGTATACCGC 59 NA Drosophila melanogaster 50 CG9938 FBgn0030500 FBtr0073850 3 1 1 187 X 13505495 13505515 TATTGCGGATCTATTCAGTCG 59 13505260 13505346 GCCATGATTTGTTCACCTG 59 NA Drosophila melanogaster 50 Tango10 FBgn0030330 FBtr0073553,FBtr0073552 3 2 2 167 X 11616428 11616571 AGGAGCGATTTAAGATCGC 59 11616701 11616720 GACTCAAGTACAGTGATGTG 57 NA DesignRelaxed Drosophila melanogaster 50 mxc FBgn0005639 FBtr0071312 1 1 1 70 X 9138110 9138128 GAATTCTACTTCGGTGACG 57 9138162 9138240 TATGGATCCTGCTCTACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12056 FBgn0030099 FBtr0071305 3 1 1 72 X 9087183 9087201 GGACTACGTCTACAAGGGA 59 9087237 9087255 ATGATGATAGGTGGTCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2263 FBgn0030007 FBtr0071190 1 1 1 60 X 8038815 8038833 GTTCCGGCAGATATTCCTC 59 8038773 8038793 TTCCACATAGTTGTTCGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tom40 FBgn0016041 FBtr0071074 1 1 2 122 X 7631708 7631915 AGTGCAAAGATATCCAGGC 59 7632001 7632019 GATATCCACTGGGTACCAC 58 NA Drosophila melanogaster 50 CG15035 FBgn0029949 FBtr0071063 3 1 1 60 X 7297094 7297112 GGATATCGAAGAAATGCGC 59 7297052 7297070 CAGTTGTTCACAGCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100214,FBtr0100200,FBtr0100205,FBtr0100201,FBtr0100206 2 5 15 191 X 6982728 6982746 GAAAGACACTCACTGACTC 57 6979978 6981655 ATTCTGTATCCATTCCGGA 57 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG4575 FBgn0029920 FBtr0071000 2 1 1 64 X 6844582 6844820 TATGGAGGCCTTTCAAACTC 59 6844847 6844865 TCGTAGTATGCGGTATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3184 FBgn0029892 FBtr0070989 3 1 1 62 X 6582486 6582504 GAGCAGTGAGTGTAATCCC 59 6582442 6582460 TCGTACAATTCCATCTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3224 FBgn0029885 FBtr0070992 2 1 1 80 X 6555058 6555079 GAACTGATCAATCAGAATGTGG 59 6554999 6555017 GATGAAGTACTTGGCACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL7A FBgn0014026 FBtr0070915,FBtr0070916,FBtr0070917 3 3 3 158 X 6425464 6425885 GATGTTGATCCTCTGGAGC 59 6425324 6425342 CTTGTCGTTGTTATCGACG 58 NA DesignNoJunction Drosophila melanogaster 50 Marf FBgn0029870 FBtr0070909,FBtr0070910,FBtr0070908 2 3 3 104 X 6262081 6262568 CCAGGAATCGGTTAAGTCTC 59 6262635 6262653 ACGAAGAATACCCTTTCGG 59 NA Drosophila melanogaster 50 Nmd3 FBgn0023542 FBtr0070425 2 1 1 111 X 2077579 2077657 GCAGGTCTATTTCAGAGCT 59 2077486 2077504 AGGATAGGTCTTTCGATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp4d14 FBgn0023541 FBtr0070426 2 1 1 89 X 2068504 2068523 ATTTACCTACGTTCAGTCGG 59 2068371 2068389 TTCATGGTGAAATCCAAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14781 FBgn0026871 FBtr0070258 3 1 1 68 X 1371536 1371554 GGATCTCAAGAAGGAGTCC 58 1371586 1371604 TTGGGCTTGATAGTGAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fz3 FBgn0027343 FBtr0112928 2 1 2 60 X 671933 671951 TGTCTTTCCTCTGCTATCC 58 671975 671993 CCGTGGTTATCAATCACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41545 FBgn0085680 FBtr0114129 1 1 1 60 U 9635860 9635878 AAACTGAAGTTGAGTGGTG 57 9635902 9635920 AATCCAGTGGTTTATTGCC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17471 FBgn0039924 FBtr0100543,FBtr0100544 2 2 2 82 4 1216408 1216477 ATACCATCCGTACGTTGTG 59 1216344 1216363 CGCTTTCTACAGTGATACGA 59 NA Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089210,FBtr0089215,FBtr0089211,FBtr0089213 1 7 7 82 4 1079778 1079796 TAACCAGACAACGAATCCT 58 1079118 1079732 ATGTAGAAGAGCTCTTGCC 59 NA Drosophila melanogaster 50 myoglianin FBgn0026199 FBtr0089093,FBtr0089092,FBtr0089095,FBtr0089094 1 4 4 85 4 713460 714015 TTCCCGAGGAAATTCAACC 59 713393 713413 CAAGTCTGAGTAGCTACTGTC 59 NA Drosophila melanogaster 50 CG11539 FBgn0039859 FBtr0085868 2 1 1 67 3R 27441573 27441591 GACCTTAGAAGAGGAGCAC 59 27441524 27441542 CAATGAAGGTCAGCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34041 FBgn0054041 FBtr0100096 1 1 1 80 3R 26334889 26334953 ATTGACGAAGCCCTTATCG 59 26334996 26335015 CACTGGACTAGATGCTATGG 59 NA Drosophila melanogaster 50 mRpS18C FBgn0039765 FBtr0085625 3 1 1 80 3R 26249985 26250003 ACTACAAGAACGTGAAGCT 58 26250047 26250065 ATAATCCGGTGATGTGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15531 FBgn0039755 FBtr0113309,FBtr0085572 1 2 2 110 3R 26021244 26021262 GTCTTCTGAAGTACTCGCC 59 26021090 26021171 ACAGCAGGACATAGAATCTC 58 NA Drosophila melanogaster 50 CG7920 FBgn0039737 FBtr0085604 3 1 2 213 3R 25840612 25840630 AACTACTTCACCTACGTGC 59 25840417 25840436 AACCGAAAGATTGCAAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1972 FBgn0039691 FBtr0085476 1 1 1 123 3R 25572450 25572523 GATGCCAAAGGCATTATGC 59 25572610 25572628 TTTCCAGGTTGAATTCGTC 57 NA DesignRelaxed Drosophila melanogaster 50 Dup99B FBgn0024381 FBtr0089608 3 1 1 61 3R 25540973 25540991 GGAGTGGATCCAAAGTCAG 59 25540877 25540896 GGTAGGGTCCTAAGTTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1907 FBgn0039674 FBtr0085447 2 1 1 193 3R 25445364 25445453 CTAGACTTGGTCAAGACCC 58 25445609 25445628 TTCAGATACGTGTACATGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1957 FBgn0027873 FBtr0085358,FBtr0085357 1 2 2 60 3R 24862476 24862494 ACGATGAGATTCCTATCCA 57 24862517 24862536 TTAAAGTCGGACAGTTTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12558 FBgn0039599 FBtr0085311 2 1 1 60 3R 24616246 24616264 GCAGCTTAGTCAGCTAGTC 59 24616286 24616306 AGAAGATCCGTAAACTGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9997 FBgn0039597 FBtr0085314 1 1 1 60 3R 24582414 24582435 TCCGAATAATGACACAGTACAG 59 24582375 24582395 ATTGGTCAAGGTAACTACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12426 FBgn0039552 FBtr0085227 2 1 1 66 3R 23697806 23697824 TGGTTCTCGTCATATTCCG 59 23697645 23697777 TTAAACGTCATCGCAATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5934 FBgn0039505 FBtr0085158 2 1 1 156 3R 23099966 23099985 TACATCGAGAACCTGATGTC 58 23100104 23100122 TACATGTAGCTCTAGCGTG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG34129 FBgn0083965 FBtr0110870 2 1 1 60 3R 22016589 22016608 CGATAGGGAGAACTATGCTG 59 22016548 22016569 CTGGTAGATAAATTTCTCGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5039 FBgn0039356 FBtr0084900 2 1 1 146 3R 21504866 21504939 CTCCACATTCAGGATGGAG 59 21505048 21505067 TACTTGTAGTAGAGGCACGT 59 NA InUTR Drosophila melanogaster 50 msi FBgn0011666 FBtr0084881,FBtr0084882 1 2 2 133 3R 21425813 21425831 CCTCATATCACAGAACCCA 58 21425928 21426005 AGTAGGGTGCATATCTGAC 58 NA Drosophila melanogaster 50 CG13658 FBgn0039315 FBtr0084826 3 1 1 183 3R 21114182 21114201 CTCCATCTTCATGGTAATGG 57 21114346 21114430 GGTCATCATGAAGAATTCGT 57 NA Drosophila melanogaster 50 ssh FBgn0029157 FBtr0084800,FBtr0084799 1 2 2 99 3R 20769070 20769088 CAGTAACAGTACGCAAAGC 59 20768924 20769007 CTTGACAGCCATCTTTAGC 58 NA Drosophila melanogaster 50 CG11168 FBgn0039249 FBtr0084715 2 1 1 111 3R 20745204 20745222 GTATCTACGTACACGCCAC 59 20745297 20745655 TGGGTGAACTCGTTTATGG 59 NA Drosophila melanogaster 50 CG7006 FBgn0039233 FBtr0084704 3 1 1 207 3R 20676482 20676551 CTGTCCAAATACATTGGCA 57 20676722 20676740 CCGTGATATGGAACTTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 atl FBgn0039213 FBtr0084656,FBtr0084657 1 2 2 91 3R 20459010 20459028 GTGGGTCTCTATACGTTCG 59 20459081 20459163 CCGCTATATCTAATGTAGGCC 59 NA Drosophila melanogaster 50 CG13617 FBgn0039201 FBtr0084641 1 1 1 83 3R 20343181 20343202 CCAAAGGTATTTCGCATAACTC 59 20343246 20343322 GTGGATGTTGCAGTTTCAG 59 NA Drosophila melanogaster 50 CG13826 FBgn0040590 FBtr0084391 2 1 1 60 3R 19048541 19048559 AGACCAACATTTGGAAAGG 57 19048499 19048519 CGAAGCCTTTCAATACTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17110 FBgn0039050 FBtr0084350 1 1 1 105 3R 18920033 18920109 TACATTGTGGCAACTTCGA 59 18920176 18920196 CAGCTTATCCATCACAAAGTG 59 NA Drosophila melanogaster 50 CG17244 FBgn0039031 FBtr0084340 1 1 1 130 3R 18803189 18803207 AATATTCCCGAAATCCCGA 58 18803301 18803319 CTGGTCTGGTTATTGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Takl2 FBgn0039015 FBtr0084325 1 1 1 132 3R 18559169 18559187 AAGCAAGCCAAGTTATTCG 58 18558681 18558699 TAGCAGTGTATTGAGTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18596 FBgn0038953 FBtr0084216 2 1 1 97 3R 18205006 18205024 GTACCTGTGAAGTTCTGGG 59 18205085 18205171 TTTCTCAGCAGTCATGCTC 59 NA Drosophila melanogaster 50 CG31465 FBgn0051465 FBtr0084147 2 1 1 92 3R 17708830 17708848 AATCAATCGTCGGAAGAGG 59 17708961 17708979 CCAGGATCCGTTTAGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 lbl FBgn0008651 FBtr0084092 2 1 1 152 3R 17236916 17236934 CAAGAAGAAACGCAAGTCC 59 17236494 17236800 AACCAAGTGATGACCTGTG 59 NA Nonspecific Drosophila melanogaster 50 CG17278 FBgn0046763 FBtr0084047 2 1 1 60 3R 16847164 16847182 CAAGACCTATCGCAATCTG 57 16847022 16847141 AAAGTTTGCATTCTGGAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4686 FBgn0038739 FBtr0083816 3 1 1 240 3R 15690791 15690809 CGGATCACTCTATCGACTG 59 15691013 15692147 CAAAGTGCCAGTGAATACG 59 NA DesignRelaxed Drosophila melanogaster 50 CG34286 FBgn0085315 FBtr0112482 1 1 1 76 3R 15541501 15541520 TGTTGTAATCGTACTCATCC 57 15541388 15541462 AGCTTTCCAGATGAATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nup58 FBgn0038722 FBtr0083781 3 1 1 102 3R 15471796 15471878 CAAGATGGCATCAAGATTAAGG 59 15471941 15471959 CAGAGGAGATGGTCTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31246 FBgn0051246 FBtr0083514 3 1 1 120 3R 13637506 13637524 GCTTAAACGGGAGAATTGC 59 13639333 13661885 GTTGTATTCGATGCTGTCAC 59 NA InUTR Drosophila melanogaster 50 CG34035 FBgn0054035 FBtr0100090 3 1 1 192 3R 13238974 13239051 TCCAGATTATGAGTTGACCA 58 13239734 13239752 AACAACTTCCTCCGTATCC 58 NA DesignNoJunction Drosophila melanogaster 50 Cad89D FBgn0038439 FBtr0083306 3 1 1 81 3R 12316385 12316403 CTCATCACCAATCTCACCA 58 12316238 12316343 TGTTGATCTCTTCTATGACAGG 59 NA Drosophila melanogaster 50 CG17931 FBgn0038421 FBtr0083322 3 1 2 60 3R 12185362 12185437 CTAACAATGACAAACGAGACTC 59 12185323 12185342 TACAGTAGTAATCCAGGCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG12784 FBgn0038356 FBtr0083169 3 1 1 60 3R 11589108 11589126 TGAAAGATGGTCTCATGGC 59 11589147 11589168 CCAGATATAAAGTTCGTACACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5073 FBgn0038331 FBtr0083094 2 1 1 81 3R 11198475 11198578 GAGACCATCAAGGAAATCG 57 11198623 11198641 TTACGCCAGGTATAAACGA 58 NA Drosophila melanogaster 50 Surf4 FBgn0019925 FBtr0083118,FBtr0083117 1 2 2 80 3R 11170643 11170661 TTTAAGGTCGACATAGCGG 59 11170516 11170534 GAAGTCCCACAGAATGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7987 FBgn0038244 FBtr0082978,FBtr0082979 2 2 2 76 3R 10400293 10400311 GGTAATCACAGACGACTGG 59 10400170 10400188 TAATCCCAGCTATCTGCTC 58 NA DesignNoJunction Drosophila melanogaster 50 pr-set7 FBgn0011474 FBtr0082929,FBtr0082928,FBtr0082930 2 3 3 146 3R 10142453 10142471 AAATCTGCTGGAGGATCAG 59 10142581 10142670 AAGGGAACTCCTATTGTGC 59 NA Drosophila melanogaster 50 Ravus FBgn0038128 FBtr0082779 1 1 1 61 3R 9088905 9088923 CACCATAACGCCTATACAC 57 9088862 9088880 GTTGATAAGATTGCAGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 beat-Vb FBgn0038092 FBtr0082684 1 1 1 94 3R 8759112 8759133 CTTTAATGACTTCGTAGAGGTC 58 8759187 8759265 CCAGAGAAACCTTTATCCCA 59 NA Drosophila melanogaster 50 CG17404 FBgn0038001 FBtr0082622 3 1 1 62 3R 8050128 8050149 CTTTCCCTTCTTGGATAATGTG 59 8050087 8050105 ATGGTGTGGTAACTCATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CoVa FBgn0019624 FBtr0082473 3 1 2 244 3R 7645124 7645288 GCGACAGTTATAAACGTGTC 59 7645560 7645579 CTGAAGTACTTCTCGTAGCG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG31374 FBgn0051374 FBtr0082400,FBtr0082401,FBtr0082399 3 3 3 85 3R 7264081 7264157 GAGTATCCTCAAGGAGGAG 57 7264014 7264032 CTTCGTCTAGCTTCATGGA 58 NA Drosophila melanogaster 50 CG4655 FBgn0037839 FBtr0082282 1 1 1 80 3R 6665262 6665348 CGATACTAGCCAATGATGC 58 6665392 6665410 GCACGATAACCACTATCTC 57 NA Drosophila melanogaster 50 Rbp1 FBgn0010252 FBtr0082277 1 1 4 91 3R 6610563 6610581 GTAGAGATGTCTTCGGGTC 58 6610636 6611133 GGAGTTATCCTGTAGCGTC 59 NA Drosophila melanogaster 50 MtnA FBgn0002868 FBtr0082158 2 1 1 77 3R 5610016 5610036 CCTAAATAGCCCATACCTACC 59 5609959 5609977 GCAAGGCATCTTGATTGAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12950 FBgn0037736 FBtr0082170 3 1 1 81 3R 5563185 5563269 TATACAATATGTCCCGGAAGC 59 5563124 5563144 GTAGACATCTGTTCCTTCTCG 59 NA Drosophila melanogaster 50 pum FBgn0003165 FBtr0081993,FBtr0081991,FBtr0081992,FBtr0081990 2 4 5 91 3R 5043824 5043935 GACGACAACGATAAGTCAC 58 5043751 5043769 GAGTTTGTGACCTGATCGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG17944 FBgn0037500 FBtr0081589 3 1 2 90 3R 3187468 3187486 GATTTCGGAATGAGACGAG 57 3187294 3187416 GGTGCTCATTATTATAGGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lap FBgn0086372 FBtr0081572 3 1 1 82 3R 3015981 3016453 GCAATGAGCGATTTATGCA 59 3016498 3016517 TTGTACAGTTCCTTTGTCCA 59 NA Drosophila melanogaster 50 Fer1 FBgn0037475 FBtr0081567 1 1 1 60 3R 2963287 2963305 CTACGAGAAGCGACTAAGC 59 2963590 2963610 GAAGGTTATGTAGCTTATGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31560 FBgn0051560 FBtr0078609 2 1 1 60 3R 2135938 2135958 GAGTCAATCAAATCGGAACAG 59 2135980 2135998 TAGTGGTAGCAGAATCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1103 FBgn0037235 FBtr0078909,FBtr0111220 1 2 2 60 3R 164025 164784 GTGTATACCTTTGTTCGGAC 58 164807 164825 TAGTAAGTAGCCAGAGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14565 FBgn0037129 FBtr0078452 3 1 1 87 3L 21737099 21737117 CTTTACATGAGGATAGCGC 58 21737030 21737048 TCAATTTCATGGAGTCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14572 FBgn0037128 FBtr0078434 3 1 1 76 3L 21734688 21734706 TCTACCCGTTATCCTTTGC 59 21734746 21734764 CATACCGGTTGATCCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED1 FBgn0037109 FBtr0078464 1 1 1 81 3L 21626068 21626086 CCTCAAGAAACAAGCTCTC 58 21625929 21626026 GCTGTCCATATCATTATACTGC 58 NA Drosophila melanogaster 50 croc FBgn0014143 FBtr0078395 2 1 1 62 3L 21468445 21468463 TATCCCTACCACTTGAACG 58 21468401 21468419 GACATGATGCATCTGACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10586 FBgn0037036 FBtr0078335 2 1 1 66 3L 20949266 20949284 CACGGTATCAGTACCTGTG 59 20949105 20949236 TATGGAGACTGATTCCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7757 FBgn0036915 FBtr0074892 3 1 2 129 3L 19904505 19904524 TCAGTTATACTGACCCAGGA 59 19904616 19904688 GTTTCAAGGGCTCATTTGG 59 NA Drosophila melanogaster 50 Cat FBgn0000261 FBtr0075058 3 1 1 177 3L 18820346 18820461 CTACTTTGCTGAGGTGGAG 59 18820602 18820620 AATCTTCACCTTGTACGGG 59 NA Drosophila melanogaster 50 CG5103 FBgn0036784 FBtr0075132 2 1 1 271 3L 18286762 18286780 GAACAAGATCTTCTGCTCG 58 18286445 18286527 TCTGCAAATGCTTGATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 blot FBgn0027660 FBtr0075235,FBtr0075233,FBtr0075234,FBtr0075232 1 4 4 128 3L 17391426 17391508 GTTGTAATGCTGTGCACAC 59 17391316 17391334 GTAGTGACGACTGAAGGAG 59 NA Drosophila melanogaster 50 Papst2 FBgn0036695 FBtr0075279 2 1 1 156 3L 17037247 17037330 TACCTTACAATATCTGTGGTCG 59 17037447 17037465 GATGAGGAATTTGCGACTC 58 NA Drosophila melanogaster 50 CG13033 FBgn0036638 FBtr0075400 3 1 1 62 3L 16537920 16537939 GATACCACTATCGTACTCCA 57 16537877 16537895 GAGGCAGATACTCCTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dcp2 FBgn0036534 FBtr0075540,FBtr0100528,FBtr0075539,FBtr0075538 2 4 4 152 3L 15816272 15816355 TTGTTCCAACACATTCCCT 59 15816138 15816156 GAAGTAGGACTGCACTAGC 59 NA Drosophila melanogaster 50 Eig71Ee FBgn0004592 FBtr0075585 1 1 1 147 3L 15648988 15649059 GTAAGCTTCTTTCTGCTGC 59 15648859 15648877 TAGATCTCACAGGTCCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9040 FBgn0036394 FBtr0075765 2 1 1 60 3L 13981211 13981230 AAGATGATGCTAGTACCTCC 58 13981252 13981271 GAACTACCTGTATCGGAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14147 FBgn0036112 FBtr0076194 3 1 1 60 3L 10966109 10966128 GGATCATCATTTGGATCACC 58 10966151 10966169 CTCATGGTGGTACACTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34237 FBgn0085266 FBtr0112431 3 1 1 300 3L 10618496 10618514 CCATAGAGATTCATTGCCC 57 10618029 10618108 AAACTCAATTGCCATGGTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG6718 FBgn0036053 FBtr0076362,FBtr0076363,FBtr0076365,FBtr0076364 1 4 4 102 3L 9854030 9854111 TCTCTACCATTGGCAATCTG 59 9853947 9853965 AAGTAGGGTATGCCAATCG 59 NA Drosophila melanogaster 50 CG6902 FBgn0035899 FBtr0076657 2 1 1 61 3L 8484483 8484501 TCTGTGCGTGTTATTTGAC 58 8484440 8484459 ATCTCGCAGACATGATATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7366 FBgn0035855 FBtr0076721 1 1 1 60 3L 8194729 8194747 TGCGGAACGATATGATCAC 59 8194687 8194707 GTATTCTCGAAACTGAGATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13676 FBgn0035844 FBtr0076732 3 1 1 84 3L 8138574 8138592 ACGAGATCCACTTCAAGTG 59 8138223 8138527 ACGCAATGGTGATAGATCTG 59 NA Drosophila melanogaster 50 Neos FBgn0024542 FBtr0076835 3 1 1 60 3L 7235974 7235993 CTTAGCATCATGAACAAGCC 59 7236016 7236034 AAGTGGGATACATGAGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr65Eb FBgn0035736 FBtr0076928 1 1 1 105 3L 7081709 7081798 CAACGTCGTTGTACTTGTG 59 7081622 7081640 CAGTTCGTTGACAAAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mdr65 FBgn0004513 FBtr0077011 1 1 1 81 3L 6237404 6237424 TGGAAACTTACCTTAGCTGTG 59 6237283 6237361 GCTTGCCTTGAAACTTAGC 59 NA Drosophila melanogaster 50 CG13296 FBgn0035687 FBtr0076997 1 1 1 62 3L 6156741 6156759 TTCTCCTTATGGGCATTCC 59 6156784 6156931 ACATGTAGCGACTATTTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lcp65Ag1 FBgn0020638 FBtr0077058 1 1 1 150 3L 6127982 6128000 TACATCGCCGATAAGAACG 59 6127850 6127869 TTCTCCTTGATAAGAACGGT 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG32232 FBgn0052232 FBtr0073373 1 1 1 60 3L 4996215 4996233 TGTACGATCACAGATACCA 57 4996173 4996191 GTAGTTGTAGTCCGAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13704 FBgn0035583 FBtr0073353 1 1 1 110 3L 4899024 4899042 TACTTGGTGATATGCCTGG 58 4900350 4900422 AAGGCCAGTGAAGTATCTG 58 NA DesignNoJunction Drosophila melanogaster 50 Ras64B FBgn0003206 FBtr0073212 2 1 1 199 3L 4139253 4139918 CATCCAGAGCTACTTCGTC 59 4140137 4140155 AGCTGGAATGATCGTTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11526 FBgn0035437 FBtr0073083,FBtr0073084 2 2 2 104 3L 3322982 3323001 TTACTTCAAGGCCAATTACG 58 3322830 3322915 GATATTAGAGCAGCGATGG 57 NA InUTR Drosophila melanogaster 50 dro5 FBgn0035434 FBtr0073062 2 1 1 91 3L 3316845 3316863 AGTTCCTGTACCTCTTCCT 59 3316918 3316936 TCCTCCGTATCTTCCAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33159 FBgn0053159 FBtr0073104 1 1 1 60 3L 3204331 3204350 TATTTCGGAAGTTCCGTACC 59 3204290 3204310 TCCTCCACAGATAAAGTAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32276 FBgn0047135 FBtr0073107,FBtr0073106 1 2 2 60 3L 3198771 3198789 AATATGTGACAATGCGTGG 58 3198409 3198427 GGATATTGACCCTCTTTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7995 FBgn0035266 FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767 3 5 5 158 3L 1743700 1743718 CCATCTCCACGTACTTCTC 59 1743909 1743927 TTACATCCGTGATGTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33791 FBgn0035240 FBtr0091794,FBtr0091793 3 2 4 101 3L 1604964 1604982 CATGATCTGGACTCCTTCG 59 1605047 1605167 GTTCCAGGACTCATCTACG 59 NA Nonspecific Drosophila melanogaster 50 CG13917 FBgn0035237 FBtr0072747 3 1 1 116 3L 1598383 1598401 CATGAGTCTCGAGAAGGAG 58 1598540 1598559 GCGTCGATGAAGATTTAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 robl62A FBgn0028567 FBtr0072695 3 1 1 64 3L 1477945 1477963 TGATAAGCTGTGCTTTCTG 57 1477991 1478009 CTTCCTCTGGACTAACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17129 FBgn0035151 FBtr0072612,FBtr0072614,FBtr0072613 2 3 3 60 3L 679095 679114 AGGTATCAAATTCCGACGAC 59 679054 679072 CTTGCTAAGGGATCACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4049 FBgn0034976 FBtr0072285 3 1 1 111 2R 19998282 19998366 TTGAACAAGAGTCCAAGCT 59 19998189 19998207 GCTTGGGTAGAATACTGGA 58 NA Drosophila melanogaster 50 CG5594 FBgn0025698 FBtr0072137,FBtr0072136,FBtr0072139,FBtr0072138 3 4 4 80 2R 19812003 19812024 CCGAAACTACTTCTAACAAGGA 59 19812065 19812149 TGAACTCATCCGGTTTCAC 59 NA Drosophila melanogaster 50 Nap1 FBgn0015268 FBtr0072219 2 1 1 60 2R 19793601 19793621 CGCAAGCTAATCGATATTTCC 59 19793498 19793516 GAAACTCCAAGGTGTACGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG10320 FBgn0034645 FBtr0113102,FBtr0113101 1 2 3 213 2R 17545965 17545983 ATTGAAGGATCCATGGCTG 59 17546219 17546237 CTTATCTCCGTGTTCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33704 FBgn0053704 FBtr0091692 3 1 1 62 2R 16837736 16837757 GAGGAATATAACCATCCATTGG 58 16837780 16838068 ATGAGTTCGTTCCAGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13442 FBgn0034546 FBtr0086240 2 1 1 86 2R 16616808 16617429 TAATCCCGAACAACTCGTG 59 16616740 16616758 GTGCTAATCCAACACTCCA 59 NA Drosophila melanogaster 50 CG16742 FBgn0034529 FBtr0086228,FBtr0086227 3 2 2 60 2R 16515304 16515322 ACTGTTTGATGATAGCGAC 57 16515346 16515364 TTGGATACTAGGAGCTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34199 FBgn0085228 FBtr0112392 3 1 1 143 2R 16175139 16175215 CAAAGTTGCTTCTACTGCTG 59 16175321 16175339 GGATAGCAGGCACATACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7735 FBgn0034446 FBtr0086534 2 1 1 82 2R 15332073 15332146 CATGAGATTTGTGGTGGTC 58 15332192 15332210 AGAGAATTGGCACAATTCG 58 NA Drosophila melanogaster 50 Jheh3 FBgn0034406 FBtr0086622 3 1 1 97 2R 14748811 14748829 AAACATCACGGATTACGCT 59 14748664 14748682 TTTCAGCGGCATTAAATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15084 FBgn0034402 FBtr0086619 2 1 1 67 2R 14739214 14739232 AACAGTCACCACATTTGGT 59 14739263 14739281 GATCCTGTACTTGGAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SP2637 FBgn0034371 FBtr0086657,FBtr0086658 1 2 2 100 2R 14529434 14529452 AGACTGGTGAGATCTTTCC 58 14529290 14529370 TATATCCAGAACCGACTGC 58 NA Drosophila melanogaster 50 CG5859 FBgn0025830 FBtr0087036 3 1 1 85 2R 12740645 12740666 CACAACATACTTAAGGATGACC 58 12740712 12740791 CTGACAGGGTTGTTAATGC 58 NA Drosophila melanogaster 50 unc-5 FBgn0034013 FBtr0087382 1 1 1 81 2R 11253282 11253359 TGATACATCGAACTCAACCT 58 11253403 11253421 CAGCATCTCATATGTGCTG 58 NA Drosophila melanogaster 50 CG8092 FBgn0033998 FBtr0087403,FBtr0087402 2 2 2 82 2R 11099263 11099281 GAGCAGACAAGAGTAACCA 58 11099141 11099159 ATACTCCAGTCCTTGAACG 58 NA DesignNoJunction Drosophila melanogaster 50 Cyp6a23 FBgn0033978 FBtr0087452 3 1 1 102 2R 10764367 10764386 GATCAACAATGTTCTGAGCA 58 10764451 10764534 ATACTTGCGAAGGGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8547 FBgn0033919 FBtr0087566,FBtr0087567 2 2 2 245 2R 10149672 10149993 AGTCATTCGGAACTACCAC 58 10149386 10149404 ACTCGTACTCGTACATTCC 58 NA DesignRelaxed Drosophila melanogaster 50 RN-tre FBgn0020620 FBtr0087603,FBtr0087605 3 2 3 124 2R 9877122 9877200 AGGACAGACAAATATGGCT 58 9877016 9877037 CACTGATTTAGCATCTTCATCC 59 NA Drosophila melanogaster 50 CG8889 FBgn0033675 FBtr0088025,FBtr0088024 1 2 3 108 2R 7914479 7914554 CAAACTAGATAATTGCACGC 57 7914390 7914408 TCTATCCGAATCGTACCTG 57 NA Drosophila melanogaster 50 CG34229 FBgn0085258 FBtr0112422 1 1 1 172 2R 7729259 7729360 TTGAAGCAGTTTATGCTGC 59 7729496 7729514 TGAAGGAGCATCTTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 betaTry FBgn0010357 FBtr0088122 2 1 1 62 2R 7234351 7234369 TATGTCAACGTGAACATCG 57 7234395 7234413 GTTTCCGTAGCCATAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp47a FBgn0033573 FBtr0088200 1 1 2 60 2R 6797436 6797455 AGTTCTAGTGCTATTGCTGG 59 6797475 6797576 CAGATTGATGTTTATCTCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pfk FBgn0003071 FBtr0088421 2 1 3 105 2R 6000579 6000597 CACTACATCGCATCATCGA 59 6000666 6001639 GCTAAGTAACCGCAATGAC 58 NA Drosophila melanogaster 50 CG8027 FBgn0033392 FBtr0088609 1 1 1 87 2R 5092884 5092959 TTGCCTACAATAACCAGGG 59 5092815 5092833 TATATTTGGGTCGGACTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8172 FBgn0033362 FBtr0113058 2 1 3 272 2R 4898800 4898818 CATGATCTGGTCTTGTTGC 58 4895737 4895824 ATATTGGAGTTTGGAGTGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG14743 FBgn0033326 FBtr0088722 3 1 1 80 2R 4598790 4598966 CTAGTTGAGACTATGCTGGT 58 4598729 4598747 CAGTAGTGACCATATTGCC 57 NA Drosophila melanogaster 50 Cyp4e1 FBgn0015034 FBtr0088746 3 1 1 85 2R 4336627 4336701 AGGACTACGTAATTGATGGTG 59 4336748 4336766 AACACGGTCATTGTATCCC 59 NA Drosophila melanogaster 50 CG2915 FBgn0033241 FBtr0088879 3 1 2 107 2R 3846921 3846939 GTTGGCCAGAAGTTATCCA 59 3846773 3846852 CTGAAAGTTGTAGGTCAACAC 59 NA Drosophila melanogaster 50 CG11125 FBgn0033174 FBtr0088974 2 1 1 133 2R 3336439 3336509 TAAGAAACGCTACGAACAG 57 3336606 3336624 AGTATATGCGGATGTCCTC 58 NA Drosophila melanogaster 50 Fmo-2 FBgn0033079 FBtr0086148 1 1 1 87 2R 2532057 2532076 GAACACTTCAAGCTAAAGGC 59 2531879 2532007 ATACGTAGACCTCCCAGTC 59 NA Drosophila melanogaster 50 CG17683 FBgn0040002 FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300 3 4 5 80 2R 19474 19549 AATCACTTCAGTTGAGGTG 57 19591 19611 CAGTCTAAATCAAGGAGATCG 57 NA Drosophila melanogaster 50 CG31703 FBgn0051703 FBtr0085946,FBtr0111227 3 2 2 102 2L 22103104 22103122 TCTTCAGCTATGGTCAACG 59 22103020 22103040 AATGGAGATCTTTCTCTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9264 FBgn0032911 FBtr0081463,FBtr0081462 3 2 2 80 2L 21079113 21079301 GCATTATAGATCTCAGGAGGA 58 21079343 21079361 GGAACCAACTTATGGAAGC 58 NA Drosophila melanogaster 50 CG10651 FBgn0032853 FBtr0081378 1 1 1 217 2L 20134272 20134340 AAATCAGCAGGAACTGTCC 59 20134073 20134091 TATTGCTTCCCTTCATGCA 59 NA DesignRelaxed Drosophila melanogaster 50 Side FBgn0032741 FBtr0081141 3 1 1 249 2L 19029112 19029319 ACGGTTAACAAATACAGAGC 58 19029531 19029549 ACTTCTTCCCGTGATTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Irk3 FBgn0032706 FBtr0114486,FBtr0081125 3 2 2 65 2L 18712026 18712045 CATCGAGTCCAAGATACGAG 59 18711710 18711728 TTTATAGTCTCACCCTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6380 FBgn0032632 FBtr0080970 1 1 1 60 2L 17291319 17291340 CTACATGAACACAAGAGTTCAC 59 17291280 17291298 ATATACGAGCAGGAGTAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15254 FBgn0028949 FBtr0080783 2 1 1 68 2L 15614614 15614632 AATGAAACCTTCAGATGGC 57 15614508 15614582 ATGCTCGGTGTCAATATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CSN1a FBgn0028838 FBtr0080671 2 1 1 61 2L 14763399 14763417 TCCGGAATCTGATTAGGGT 59 14763442 14763460 AATGTAGGTGAGGACATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34166 FBgn0085195 FBtr0112357 1 1 1 288 2L 14743257 14743275 TAGAACGCTTTCGACAGTG 59 14743601 14743619 TTTAGTAACGTCCACCGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Adh FBgn0000055 FBtr0100594,FBtr0100591,FBtr0100589 1 3 5 100 2L 14616350 14616368 TTTGACCAACAAGAACGTG 58 14616432 14616515 GGATCACCAGGTTCTTCAG 59 NA Nonspecific Drosophila melanogaster 50 nAcRalpha-34E FBgn0028875 FBtr0080593 1 1 3 88 2L 14083488 14083506 TAGCTTCATCCGTTGTGTC 59 14083558 14089116 TTTACGTAGCCATTCGGAC 59 NA Drosophila melanogaster 50 kek1 FBgn0015399 FBtr0080401 3 1 1 60 2L 12820646 12820664 CCCATATCGCATTATGTGG 58 12820604 12820622 GAGCTCGACATGTAATCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ref2 FBgn0032439 FBtr0080376 3 1 1 60 2L 12611275 12611294 GTTCAAGGAGGATCGATCAG 59 12611234 12611255 ACCTTTGAATTCCTCTAAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6579 FBgn0032422 FBtr0080357 1 1 1 63 2L 12176938 12176956 ATCAGTGCAAATCCCTCAC 59 12176893 12176911 ATGTTAGAGGCAGAATCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34160 FBgn0085189 FBtr0112351 1 1 1 72 2L 10580081 10580099 TAGACGATTATTGTGCCGT 58 10580135 10580153 TAGATTTCTAGCCCTTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5385 FBgn0032215 FBtr0080062 1 1 1 60 2L 10311923 10311942 ATTGAATAGCAGATCGACGT 59 10311768 10311900 ATTTGAGGGTTCACCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13394 FBgn0032037 FBtr0079717,FBtr0079718 3 2 2 64 2L 8391199 8391291 CAAAGCGACTTACAAGGGA 59 8391153 8391172 TAGAAGGTACTCATCCACGT 59 NA DesignRelaxed Drosophila melanogaster 50 cup FBgn0000392 FBtr0079298 2 1 1 93 2L 6665778 6668346 AAACGGAGTTCCAAGATCC 59 6668402 6668421 TAGTCTTCGTCGTTGTAACC 59 NA Drosophila melanogaster 50 CG9547 FBgn0031824 FBtr0079263 1 1 1 60 2L 6493746 6493764 TCCTGAACGGATCTAAGAC 58 6493704 6493722 CATACGACTATGACGTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11029 FBgn0031735 FBtr0079136 1 1 1 82 2L 5746670 5746688 ATTGACATCATAGCTGCCT 58 5746734 5746752 TCGTTGATCATGTCGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsp60C FBgn0031728 FBtr0079111 3 1 3 84 2L 5662970 5668824 GACCAACTAAAGCTCTCCA 58 5668871 5668951 CATGTTGACTGATATTTGCC 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG34124 FBgn0083960 FBtr0110838 1 1 1 80 2L 4963959 4964035 GAGAAACAGAAAGAACTCGC 59 4964075 4964096 CATTATGTTAACCTTCTCGGTG 59 NA Drosophila melanogaster 50 CG14044 FBgn0031650 FBtr0078990 1 1 1 80 2L 4943740 4943813 ACGGATAATAGATCCCAAGC 59 4943856 4943874 TCTAGGGATATCGTGGAGG 59 NA Drosophila melanogaster 50 Cf2 FBgn0000286 FBtr0089649 2 1 3 77 2L 4879196 4880311 ATTTAACGACTCACACGGG 59 4879137 4879155 TCAGATAGTCCTTCACGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG3355 FBgn0031619 FBtr0077376 1 1 2 184 2L 4652029 4652047 CTAACTACGATCCCAACCG 59 4652461 4652479 CAGATAGTTGGAGGTGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31778 FBgn0051778 FBtr0077543 2 1 1 60 2L 3704938 3704957 AGCTAAGAATCACCATTGGA 58 3704897 3704915 GTGAATGGTTGTTCCAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sr-CIV FBgn0031547 FBtr0077560 2 1 1 179 2L 3523289 3523307 TTTGGAACCTACCACTTCC 59 3523062 3523146 GTCGAACTTGTAGGGATGG 59 NA Drosophila melanogaster 50 CG2772 FBgn0031533 FBtr0077516 2 1 1 176 2L 3447080 3447152 CCTTAACCAGACTCTGCTC 59 3447292 3447310 GTGAGATCATATGCCGGAG 59 NA Drosophila melanogaster 50 CG2843 FBgn0031452 FBtr0077712 1 1 1 294 2L 2745204 2745277 TGGCGGAGATCTAAATCTG 58 2745597 2745615 GGACTTGTCGATCTTACGG 59 NA DesignNoJunction Drosophila melanogaster 50 Hrs FBgn0031450 FBtr0089751,FBtr0089750 2 2 3 169 2L 2740459 2740523 CCAGAAAGATGTCACTCCC 59 2740656 2740674 TGAACATCTCGCAGTTCTC 59 NA Drosophila melanogaster 50 Or23a FBgn0026395 FBtr0077698 3 1 1 62 2L 2654850 2654922 GCTGTATAGATTACTCGATGTG 58 2654945 2654963 ATAAACTGCACCATCATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3639 FBgn0031282 FBtr0078010 2 1 1 60 2L 816192 816213 TATTCGACTACTTTGGACTACG 59 816234 816252 TCCTGAATCCTCAAACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 al FBgn0000061 FBtr0078053 1 1 1 76 2L 384874 384892 TTATCCCGACGTGTTTACG 59 385738 386317 GAAACCAAACCTGAATGCG 59 NA DesignRelaxed Drosophila melanogaster 50 tRNA:CR32362 FBgn0052362 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-307 FBgn0067697 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Aats-lys FBgn0027084 FBtr0071367,FBtr0071366 3 2 2 73 X 9501701 9501721 CGCTATCTTGATCTCATTCTC 58 9501587 9501666 ACGTACGAGATGATCTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG32699 FBgn0052699 FBtr0110850 1 1 2 92 X 9467349 9467444 TCATCCATCTCTACAGCGA 59 9467275 9467293 TTTGTTCATTCAGCTTGCC 59 NA Drosophila melanogaster 50 CG3342 FBgn0029874 FBtr0070918 1 1 1 60 X 6420890 6420911 GACACTGGACAAATATCTAGAC 58 6420851 6420870 CATCTTGTGCTCCATTAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32813 FBgn0052813 FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219 3 4 6 225 X 1283913 1283931 CAACCATTCGTTCATGGAC 59 1284338 1284356 CTTGATAAGGATCACGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG41087 FBgn0069947 FBtr0113986 2 1 1 60 U 2089870 2089888 GCTGATGCTTGTCAAAGTC 59 2089828 2089849 GATCTTCTGGTAAACAAACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CaMKI FBgn0016126 FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089063,FBtr0089065 1 7 7 106 4 473274 473293 ATGAAATTAGTGAGTCCGCA 59 473362 473438 TCCAGAAATCCAAGCATGG 59 NA Drosophila melanogaster 50 plexB FBgn0025740 FBtr0089179 1 1 1 84 4 53992 56512 GCTGTTTGCTAAGGATATTCC 59 53928 53946 GTCGCTTATTTGTGGAAGC 59 NA Nonspecific Drosophila melanogaster 50 RpL32 FBgn0002626 FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555 2 4 5 61 3R 25871413 25871431 CGGATCGATATGCTAAGCT 59 25871308 25871326 CACTCTGTTGTCGATACCC 59 NA DesignNoJunction Drosophila melanogaster 50 Acph-1 FBgn0000032 FBtr0085610,FBtr0085609 1 2 2 104 3R 25818488 25818562 GATTTGACCAATTTGGGCA 58 25818402 25818420 GTAGATGTTCTCGTTGGAG 57 NA DesignRelaxed Drosophila melanogaster 50 alph FBgn0086361 FBtr0085446,FBtr0085442,FBtr0085445 2 3 5 166 3R 25422971 25422990 GAGTCTAGCAAGATAACCGA 58 25423191 25423899 TAATGCGTTGGACTTTCAC 58 NA Drosophila melanogaster 50 Cyp6a18 FBgn0039519 FBtr0085183 2 1 1 60 3R 23305497 23305517 AAGGATCTAAAGTACCTCGAC 58 23305597 23305616 GTACAATGGTATAATGGCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0084927 3 6 7 167 3R 21532677 21532695 GACATCAGGTGCTCTACTC 59 21532198 21532547 GATGTTCCAACATATGCGTC 59 NA Drosophila melanogaster 50 CG11913 FBgn0039331 FBtr0084833 2 1 1 60 3R 21184836 21184855 GACTGTGGAGCTATAACTCC 59 21184877 21184896 ACTCATACAACTTCTCACGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6028 FBgn0038924 FBtr0084187,FBtr0084186 2 2 2 62 3R 17850248 17850266 ATGTGATCAATCGTCTGTC 57 17850204 17850222 TTCCGGTGACTATGATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31431 FBgn0051431 FBtr0084137 3 1 1 92 3R 17697852 17698142 TGACTATACAGAGAACACAGAG 58 17698195 17698213 ATACTCTCATCGACCAGAC 57 NA Drosophila melanogaster 50 CG14861 FBgn0038280 FBtr0083023 3 1 1 60 3R 10840740 10840761 GTTCAATGAATCTGATGAGGAG 58 10840780 10840800 AAAGGATGTACCAGAACTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His4r FBgn0013981 FBtr0082962,FBtr0082963,FBtr0082964 1 3 3 69 3R 10451846 10451865 TAACATCCAGGGTATCACCA 59 10451897 10451915 AGAGATACGCTTAACACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NK7.1 FBgn0024321 FBtr0082941,FBtr0082942 3 2 2 85 3R 10167296 10169956 ACCAAGAAGGAAAGTTCTGG 59 10167230 10167248 GTTGGACTGATATCCGGTG 59 NA Drosophila melanogaster 50 CG31337 FBgn0051337 FBtr0082790 1 1 1 91 3R 9370330 9370348 TATGCGATGTACAAGGAGC 59 9370089 9370275 CACAAATGATAGCCTTCGC 59 NA Drosophila melanogaster 50 l(3)neo38 FBgn0086910 FBtr0082533,FBtr0110877,FBtr0110876 3 3 3 126 3R 7596969 7596991 GAATATCTCCATACCGTACTCAC 59 7595815 7596883 CTGGTTGAGGACTTCTTCC 59 NA Drosophila melanogaster 50 Syn FBgn0004575 FBtr0089476,FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471 1 5 5 80 3R 6041341 6042793 GGTGGATGAGATATCCGAG 58 6042837 6042855 TACTCTCGTCCATCTTTGG 58 NA Drosophila melanogaster 50 CG10086 FBgn0037517 FBtr0081744 1 1 1 110 3R 3618430 3618607 GTACCAGATTTACCTCCTCC 58 3618680 3618698 ATAGCGTGGAGTAAATCGG 59 NA Drosophila melanogaster 50 CG31248 FBgn0051248 FBtr0081564 3 1 1 110 3R 2956077 2956149 AAATTCAGTATGCACCACC 57 2956222 2956241 CCACTTCGATCATAAAGTCC 58 NA Drosophila melanogaster 50 pb FBgn0051481 FBtr0089277,FBtr0089276 1 2 4 135 3R 2552943 2565279 CAATCAGGGTGATAACTCCA 59 2537545 2537563 TATCTCGATCCTCCTTGGG 59 NA Drosophila melanogaster 50 CG1076 FBgn0037402 FBtr0078585 1 1 1 129 3R 1948786 1948805 ATATGATTCGACCCACTGTC 59 1948897 1948973 GGAGTGATGACTCGTTGAG 59 NA Drosophila melanogaster 50 Lcp65APsi FBgn0020646 FBtr0076993 2 1 1 104 3L 6141448 6141466 AACCATTTCAATTGCCCTG 58 6141531 6141552 GTCTCAAACTTGTAGCTATAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arf79F FBgn0010348 FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572 3 6 7 86 3L 22862823 22862842 ATTAGCTTTACAGTGTGGGA 58 22862563 22862777 GATAAGACCTTGTGTATTCTGG 58 NA Drosophila melanogaster 50 Csp FBgn0004179 FBtr0078494 2 1 3 106 3L 22263005 22264017 GTATTCACATCTGAATCGCC 58 22264667 22264685 AGTTAACGTCGTCTAGGTC 58 NA Drosophila melanogaster 50 CG14183 FBgn0036931 FBtr0074907 2 1 1 80 3L 20019233 20019251 GAATGGGTTACTGAGGAGC 59 20019123 20019192 ATACTCAACCCTCATGTATTCG 59 NA Drosophila melanogaster 50 CG32204 FBgn0052204 FBtr0113429 3 1 1 82 3L 18923743 18923764 AATCGTACTGATATACTCGTGG 59 18923242 18923700 TTTGCACACCGTAGTAGAC 59 NA Drosophila melanogaster 50 CG4306 FBgn0036787 FBtr0075117 3 1 1 60 3L 18455406 18455424 GGAGGATTATGTTCAGCGA 59 18455364 18455385 CAGATAGGAGTTAACTTGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NUCB1 FBgn0052190 FBtr0075171 1 1 1 65 3L 17792152 17792170 ATTCTTCTCCATCCACGAC 59 17792105 17792123 AACAGAGCTTTGACCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5284 FBgn0036566 FBtr0075445 3 1 2 118 3L 16087340 16087463 CTTTACCGTGATAATGTTCGAG 59 16087541 16087560 CATCGTAGATACCTTGCCTG 59 NA Drosophila melanogaster 50 CG10738 FBgn0036368 FBtr0075804 3 1 2 158 3L 13454313 13454332 ACATTGAACAGTATGATCCG 57 13454453 13454602 ATTTGTTGACCTCATTGGC 58 NA Drosophila melanogaster 50 CG18331 FBgn0036181 FBtr0076140 1 1 1 60 3L 11604384 11604402 CAACCACTACATCGAAGAC 57 11604342 11604361 CTAGACCAGGAGTATTTGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6709 FBgn0036056 FBtr0076360,FBtr0113156 1 2 2 80 3L 9886558 9886630 ACATGCGATACAAGAAATGG 58 9886497 9886515 CCAGATTGTTATCGGATGC 58 NA Nonspecific Drosophila melanogaster 50 CG10063 FBgn0035727 FBtr0076935 2 1 1 60 3L 6964866 6964885 ATGACTTGACCTACCTAACC 58 6964825 6964843 TGAACGATATTGTGCTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9948 FBgn0035721 FBtr0076896 2 1 1 60 3L 6949964 6949982 GCAGAACGAAGGATTACAG 58 6950006 6950024 ACTGATTACTCAAGGCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1275 FBgn0035321 FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906 3 4 4 139 3L 2253685 2253787 GTATGGCAACTCCATTCTG 58 2253564 2253582 AGTTGTGGGAATCGAAGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG30275 FBgn0050275 FBtr0071874 2 1 4 124 2R 18595820 18595838 ATCCACTTTGTGGAAACCT 59 18595926 18596199 TTATCTTCGGCCCTATCCA 59 NA Drosophila melanogaster 50 NC2alpha FBgn0034650 FBtr0071666,FBtr0071667 1 2 2 63 2R 17558012 17558030 GAAGATCATGCAAAGCGAC 59 17558057 17558075 TGAGATGATAACAGGCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30075 FBgn0050075 FBtr0087555 3 1 1 60 2R 10263837 10263856 TCTGCTTCAACAAGATGAGG 59 10263878 10263897 AGACGAAGTTCCTTCATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835 3 6 8 110 2R 8504608 8504626 CCTGCATATTTACCCACTG 57 8504697 8505312 GACGTCTACCATTCTAAATCTG 58 NA Drosophila melanogaster 50 CG30490 FBgn0050490 FBtr0088209 3 1 1 60 2R 7007166 7007185 CACAAATACTTCTAACGGCA 58 7007125 7007143 GCTACTCTCCTGATGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11778 FBgn0033371 FBtr0088563 1 1 1 280 2R 4971217 4971235 TTCTAAGCATGACCGAGAG 58 4971479 4971553 AATAGACGTATCCGTCGAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG12107 FBgn0033209 FBtr0088924 1 1 1 110 2R 3562263 3562281 TATTCGGCATCTTTCTGGG 59 3562425 3562443 TTATGGCGTACAGGTAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 RpL21 FBgn0032987 FBtr0085961 3 1 1 67 2L 22247681 22247699 AACTCAAAGGGCTATCGTC 59 22247632 22247650 ATAACTCCATGCTTTCGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lok FBgn0019686 FBtr0081329 1 1 3 244 2L 20061999 20062152 GATCAAATCGCTGGATCTC 58 20062597 20062617 CATTCTTTAGGATTCGCATCC 59 NA DesignRelaxed Drosophila melanogaster 50 Pde11 FBgn0085370 FBtr0112544,FBtr0112545 2 2 2 80 2L 18535124 18535199 CTCCTTCCAGATTAAAGCCT 59 18535063 18535083 CACTGATCAAAGTGATGATGC 59 NA Drosophila melanogaster 50 RluA-1 FBgn0051719 FBtr0080040,FBtr0080039,FBtr0080041 3 3 3 80 2L 10464363 10464384 TATATCCATGTTCAAGAGCACC 59 10464242 10464324 CTATGATGAACAACGGAAGTG 59 NA Drosophila melanogaster 50 rost FBgn0011705 FBtr0079782 2 1 1 82 2L 8986655 8986673 GTGTACGGAATGAGTCTGG 59 8986522 8986610 TTGCCAAATTCATCTGTTCC 59 NA Drosophila melanogaster 50 Spn2 FBgn0028987 FBtr0079624 2 1 1 64 2L 8240694 8240712 TCATAAGGCGTTCATCGAG 59 8240593 8240666 AAAGTAAAGCTGTTGCAGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Mnn1 FBgn0031885 FBtr0110978,FBtr0079401 3 2 3 84 2L 7059186 7060972 CACAAAGGAGGAGAAATCCA 59 7061019 7061037 ATTGAGAATCTTCTCGCCA 58 NA Drosophila melanogaster 50 toc FBgn0015600 FBtr0110903,FBtr0077665,FBtr0077663,FBtr0077662,FBtr0077664 3 5 6 100 2L 3071761 3080665 TTCATGTCCAAAGAGCTGG 59 3071679 3071699 TGCTGTAGCAGCAATATAGTC 59 NA Drosophila melanogaster 50 CG33673 FBgn0053673 FBtr0091652 1 1 1 93 2L 1946255 1946273 TCGATATCAACCGAAACTG 57 1946122 1946140 ATCACAAGGAGCAAATCTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG18131 FBgn0031343 FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934 3 4 6 63 2L 1500146 1500167 GCCAGCTTATATCTAATGACCT 59 1500036 1500123 GATATGTTGACTTGAGTGGC 58 NA DesignRelaxed Drosophila melanogaster 50 GluRIIC FBgn0046113 FBtr0078026,FBtr0078027 3 2 2 140 2L 917374 917471 CTTTGGAAGAAAGGCTCAC 58 917575 917593 TATCCAATGATCTTCGCGG 59 NA Drosophila melanogaster 50 Nle FBgn0021874 FBtr0078075 3 1 1 61 2L 567612 567632 TTGTGGGATCTTAACACAGAG 59 567571 567589 AGAACCCACTGCTTATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8010 FBgn0031008 FBtr0074688 2 1 1 144 X 19161474 19161492 GATACAACGACTTCGAGGA 58 19161282 19161366 TGCCTGTAATACTTCTCCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG9172 FBgn0030718 FBtr0074151,FBtr0074152 1 2 2 82 X 15880262 15880280 AAGGTCTACGACCAAATGC 59 15880198 15880216 GAGTAATGGTAGTAGCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 REG FBgn0029133 FBtr0073730 2 1 1 135 X 13106868 13106886 GTGGATGTCATCGTCTCTG 59 13106982 13107200 TAAGTAGATTGGAATCCTCCAC 59 NA Drosophila melanogaster 50 CG32682 FBgn0052682 FBtr0071480 1 1 1 60 X 10201913 10201931 AAACAGGTATACACTGGGC 59 10201871 10201889 TTTCTAATTCAAGTGCCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12661 FBgn0030071 FBtr0071265 2 1 1 60 X 8817389 8817407 AGAATCGCCTAGAGAAGTG 58 8817347 8817366 TCCAAGCTATAATCGGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14441 FBgn0029895 FBtr0070959 2 1 1 103 X 6607701 6607783 AATAATCGCAAACTTGGGC 59 6607849 6607868 GCCTCTCGCAATATTAACTG 58 NA Drosophila melanogaster 50 CG14265 FBgn0040393 FBtr0070541 2 1 1 226 X 3130645 3130663 TAGCAGTCGTACTGATCTG 58 3130437 3130455 CTTCTTGGATGAACTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sta FBgn0003517 FBtr0070289,FBtr0070291,FBtr0070290 2 3 3 225 X 1376899 1376919 GGGAGGCTTAGATATTCTGTC 59 1376502 1376712 GATGACGAAGATGTCCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ase FBgn0000137 FBtr0070075 1 1 1 60 X 355896 355917 GGTTGCAATACATCAGAATACC 59 355938 355956 AATAAGTCAGTCGTCAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15510 FBgn0039707 FBtr0085487 1 1 1 152 3R 25662547 25662621 AGAGCAAGAAACCATCGAC 59 25662737 25662755 ATCTGGACGATCTCCTCTC 59 NA Drosophila melanogaster 50 CG33977 FBgn0053977 FBtr0100020 2 1 1 63 3R 9228654 9228673 TCTTTGCGATTCCCTATCTC 59 9228610 9228628 TACTTGGTAGTTAGTGGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8021 FBgn0037602 FBtr0081878 3 1 1 90 3R 4476920 4476939 ACCTACTTCTCAAAGTACGG 58 4476992 4477010 AAACCACAAAGCCATAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17233 FBgn0036958 FBtr0074852,FBtr0074851,FBtr0074850 1 3 3 60 3L 20227274 20227366 AAGGATATTGTTCTATGCCG 57 20227233 20227251 GTGCAATCTTGTGGAAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 Elo68beta FBgn0036128 FBtr0113161 1 1 2 121 3L 11094311 11094385 ACATGAAATCCGGATAGCG 59 11094208 11094226 ACACATGTAGGAAGCTCAG 58 NA Drosophila melanogaster 50 dally FBgn0011577 FBtr0076583 3 1 1 125 3L 8879486 8879603 CCGAAATCATGAACCATCTG 58 8879691 8879709 ACTGAACAAAGAAGTGCCT 59 NA Drosophila melanogaster 50 CG15829 FBgn0035743 FBtr0076913 1 1 1 71 3L 7122060 7122152 CTTTGAGGAGATCGTCGAG 59 7122187 7122205 TAGAACTCGAGGAACTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11586 FBgn0035520 FBtr0073243 2 1 1 62 3L 4262084 4262102 AATCCGGTGGCTATTACTG 59 4262040 4262059 CCAGAAAGTTGATGGAATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14989 FBgn0035495 FBtr0073207 3 1 1 234 3L 4089191 4089209 TTTGCTGTGTAAAGAGCTC 57 4090361 4090379 CTTCATCACCCTCATCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30429 FBgn0050429 FBtr0072450 2 1 1 147 2R 21134524 21134600 TTTACGCTAATGGAAACCG 58 21134711 21134729 GGTTCATCCTGTACCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9294 FBgn0034666 FBtr0071720 2 1 1 68 2R 17749019 17749037 GAACTGGGTATAGTTGCTG 57 17749069 17749142 TTCCCTTAAGGTATCGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7997 FBgn0034117 FBtr0087172,FBtr0087171 1 2 2 80 2R 12229398 12229418 CAGCTCCTCTAATTATGTCCA 58 12229277 12229356 CAATAACCGCACGATTCTG 59 NA Drosophila melanogaster 50 CG8768 FBgn0033769 FBtr0087871 2 1 1 152 2R 8579233 8579307 AGTTTAGCAAAGCCTTTGC 59 8579099 8579118 TAAATCCGGATGATAGAGCT 57 NA DesignRelaxed Drosophila melanogaster 50 CG30502 FBgn0050502 FBtr0089001 2 1 1 127 2R 3334678 3336934 GATAGTATGGAGCACCTAGTG 59 3334571 3334589 TACCAAGGGTCAAAGAGAC 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111092,FBtr0111064,FBtr0111093,FBtr0111070,FBtr0111098,FBtr0111087,FBtr0111063,FBtr0089016,FBtr0111072,FBtr0111084,FBtr0111066,FBtr0111053,FBtr0111090,FBtr0111086,FBtr0111058,FBtr0111050,FBtr0111061,FBtr0089020,FBtr0111082,FBtr0111079,FBtr0089017,FBt 2 60 60 83 2R 3208258 3209096 GATAGAAAGAAACGAAACCGG 59 3208195 3208213 GCCATAGTATCGTAGGCTG 59 NA Drosophila melanogaster 50 CG2225 FBgn0032957 FBtr0100618,FBtr0085918,FBtr0085914,FBtr0085915,FBtr0085917 3 5 5 122 2L 21669233 21669379 TACAACGGTAACGATCAGC 59 21669129 21669147 TATTTGCATCAGTGGAGCA 59 NA Drosophila melanogaster 50 CG31680 FBgn0051680 FBtr0081383 1 1 1 61 2L 20640192 20640284 GTTCTAAGTGAATCCTTAGCAG 58 20640303 20640324 GAAATATTATGAAGCCTCCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15145 FBgn0032649 FBtr0080991 2 1 1 104 2L 17531715 17531734 AAGGATGAAACCACTCAGAC 59 17531558 17531576 GAACAGTTCTAGGGTACGG 59 NA DesignNoJunction Drosophila melanogaster 50 ACXE FBgn0040506 FBtr0080416 3 1 1 92 2L 12928710 12928791 TCATATCGTGGATGTGTATCTC 59 12928843 12928862 ATTAGCATGGCAAACATGAC 59 NA Drosophila melanogaster 50 CG12307 FBgn0032370 FBtr0080266 3 1 1 69 2L 11651627 11651645 CAGAGCTCTGTGAGTTGTC 59 11651576 11651595 TCATCGCGAGATTGTTAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34366 FBgn0085395 FBtr0112591 1 1 1 119 2L 9380713 9380828 TCATCAGGCTGATTGTCTC 59 9380612 9380630 TATATTCACCCATGCGCTG 59 NA Drosophila melanogaster 50 tRNA:G3:57BCb FBgn0011872 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 su(f) FBgn0003559 FBtr0113736 3 1 5 80 XHet 77304 77323 AGGACTATATCGCATTCGAG 58 77366 77612 TAGGGCCGTATTTAGATCG 58 NA InUTR Drosophila melanogaster 50 CG14619 FBgn0031187 FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350 1 5 5 122 X 21868684 21868703 TTATGAACTCGGTCATCCAG 59 21868788 21868866 GTTTGGCAAATTCGTGGAG 59 NA Drosophila melanogaster 50 tty FBgn0015558 FBtr0077225,FBtr0077224 1 2 2 98 X 21207802 21207820 CGATGAGATCTACCTGGAG 58 21207428 21207447 CGGGTCATGAGATAGAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 sw FBgn0003654 FBtr0089403,FBtr0089404 2 2 13 73 X 20105893 20105912 AAAGAGACACTGGTCTACAC 58 20103229 20105857 TTGTATTCATCATCGCCGT 59 NA DesignRelaxed Drosophila melanogaster 50 RhoGAP18B FBgn0030986 FBtr0074699 3 1 1 86 X 19038525 19038610 AATGTGTTTCGCATCAACC 59 19038457 19038475 CTCGTCCAGGTACAAACTG 59 NA Drosophila melanogaster 50 Pk17E FBgn0004462 FBtr0074634 2 1 1 81 X 18685101 18685185 CAACCTCCATATTCTATCGGA 58 18685228 18685246 ACGAACCAGATCAATGGAG 59 NA Drosophila melanogaster 50 CG15046 FBgn0030927 FBtr0074628 1 1 1 203 X 18382307 18382326 ACTATCTGGCGGATATAGTG 58 18382010 18382085 GACAGTCAGTGTCTTCACC 59 NA DesignRelaxed Drosophila melanogaster 50 wupA FBgn0004028 FBtr0074520 3 1 7 89 X 18006657 18006675 AAGCAACACTATGACAGGA 58 18000956 18006605 ATCGTTGATCTCAACATCCT 58 NA Drosophila melanogaster 50 CG5445 FBgn0030838 FBtr0074425,FBtr0074427,FBtr0074426 1 3 4 85 X 17197412 17198114 GATGAGTAACTGGAGCCTG 59 17198163 17198181 GGACGATCTTCATCGAAGG 59 NA Nonspecific Drosophila melanogaster 50 f FBgn0000630 FBtr0074424,FBtr0074421,FBtr0074423,FBtr0074420,FBtr0074422 2 5 6 106 X 17173603 17173621 AGAAGATGAAAGTGGAGCA 58 17173691 17173774 CAAGTAGATCTGGTCCACG 59 NA Drosophila melanogaster 50 mei-218 FBgn0002709 FBtr0100640,FBtr0100639 3 2 2 89 X 17033337 17033420 TCTAGATTGAGCCAAAGACG 59 17033267 17033285 AGGATTTGGTAGTTGCTCG 59 NA Nonspecific Drosophila melanogaster 50 mei-218 FBgn0002709 FBtr0100640,FBtr0100639 2 2 2 88 X 17033337 17033419 CTAGATTGAGCCAAAGACG 57 17033267 17033285 AGGATTTGGTAGTTGCTCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 spheroide FBgn0030774 FBtr0074363 1 1 1 69 X 16595393 16595411 AGTACCAACCAGTATGCTG 58 16595342 16595360 TATAGTAGTCCGGATGCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 r FBgn0003189 FBtr0089734,FBtr0089733 3 2 2 93 X 16554422 16554440 TATGAGGCGTATCTCAAGG 58 16554496 16554580 CCATCTTGTGCTTGAAACTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG9992 FBgn0030744 FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309 1 5 5 93 X 16277004 16277022 AGTCCTACTTCCGAGACTG 59 16276867 16276947 CAAAGTTGTGCAAGTCCTG 59 NA Drosophila melanogaster 50 vap FBgn0003969 FBtr0074141,FBtr0074143,FBtr0074142,FBtr0074140 3 4 4 110 X 15897469 15897569 CTATTTAGTTCGCGAAAGTGAC 59 15897299 15897318 ATATAGAAGTCTCCGCACAC 58 NA Drosophila melanogaster 50 CG16952 FBgn0030701 FBtr0074115,FBtr0074114,FBtr0074116 1 3 3 110 X 15769231 15769312 ATATACAGCATCAACTGCCA 59 15769385 15769403 GTTGTGGATGTGATGTTGG 59 NA Nonspecific Drosophila melanogaster 50 CG6299 FBgn0030641 FBtr0074033,FBtr0074032 2 2 2 139 X 15360379 15360398 TCATATGCACCTTCTTCGAG 59 15360497 15360584 GTAGATGATCTTGATTGTGCTC 58 NA Drosophila melanogaster 50 rdgB FBgn0003218 FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194 3 4 4 84 X 13663020 13663039 CTATTATCCGGACAATGGCT 59 13663083 13663187 GTCAATTACGTCTACGATACGA 59 NA Drosophila melanogaster 50 CG32631 FBgn0052631 FBtr0073799 2 1 1 88 X 13451538 13451556 TCAACGAGAAGGAGTACAC 58 13451608 13451626 TTAGAACTGACCACTCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4645 FBgn0030435 FBtr0073692 2 1 1 142 X 12805134 12805450 TCTCTGGGTGATCAATATCTC 58 12805554 12805572 TCAGGATTCCAACGATGAG 59 NA Drosophila melanogaster 50 CG34323 FBgn0085352 FBtr0112525 2 1 1 60 X 11964609 11964628 CCTGGGTATTGAAGTACGAC 59 11964648 11964669 CCCTGATTAACGTGAATAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hmr FBgn0001206 FBtr0071511 2 1 1 125 X 10486441 10486459 CTCTACTGCGATTTACGCA 59 10486275 10486353 CCGATGATTGAGATTTGGGA 59 NA Drosophila melanogaster 50 CG2990 FBgn0030170 FBtr0112971,FBtr0071415 2 2 2 103 X 9906163 9906182 GATATTAGAAGAGGGACGCT 58 9906307 9906325 CAACATATTCGCCCAAGTC 58 NA DesignNoJunction Drosophila melanogaster 50 btd FBgn0000233 FBtr0071379 1 1 1 73 X 9590947 9590965 ACATGAAGTCCGAGTATGC 59 9591002 9591020 ATGCGGATAACCGTAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3099 FBgn0030145 FBtr0071365 2 1 1 61 X 9514512 9514532 TTCTATCGCAAACTAGAGTCC 59 9514554 9514634 ATGTGCAGTTTAAGCTTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 ric8a FBgn0028292 FBtr0071317 1 1 1 61 X 9150342 9150360 CACCTGAAACGACTAGAGG 59 9150385 9150403 TTGAATTCGTCCAGGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17754 FBgn0030114 FBtr0071314,FBtr0071316,FBtr0071315 1 3 3 215 X 9148059 9148150 ATACCTGGACTCTGATCTG 57 9148329 9148347 GTATGACATTCGGAATCGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG12118 FBgn0030101 FBtr0071340,FBtr0071339 1 2 2 124 X 9089594 9089612 AAGGAGACATCGAAATGGG 59 9089159 9089177 TAGAAAGAATGGACGTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274 1 10 10 163 X 8768353 8768371 GATGAGAACGAGAACGAGG 59 8768131 8768227 TCTTGTTTCAGAGCCTTGAG 59 NA Drosophila melanogaster 50 CG12075 FBgn0030065 FBtr0071253,FBtr0071254 2 2 2 63 X 8763928 8764014 CAACAGTTCCAGTGATGAC 58 8764041 8764059 CTTCAGAGCAATAACCGAG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG2004 FBgn0030060 FBtr0071281 1 1 1 203 X 8607808 8607826 GATATTCTTCCGCAACGAG 58 8607430 8607641 TAGTCTTGACGTACAGGTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG1440 FBgn0030038 FBtr0071197,FBtr0112961,FBtr0112962 1 3 3 91 X 8334503 8334584 GTATCCGTGGATAAGAGCG 59 8334639 8334657 TTCATCACCAGATAGCCCT 59 NA Drosophila melanogaster 50 CG1636 FBgn0030030 FBtr0071171 3 1 1 133 X 8168645 8168746 CATCGATGTTTACAGGTACG 58 8168842 8168860 AAACCTGGTAGATGATCCG 58 NA Drosophila melanogaster 50 CG10761 FBgn0030015 FBtr0071187 2 1 1 63 X 8055821 8055839 TTATTGAGCATCCTCCTGG 58 8055776 8055794 GGAAGATACTGGCCAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Upf2 FBgn0029992 FBtr0071117 1 1 1 60 X 7966164 7966183 AATAAGCGAGATAGACGAGG 58 7966059 7966077 TCGCTGATCATTCGATGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11386 FBgn0029973 FBtr0071139 1 1 1 60 X 7791673 7791691 GTAAATACACCGTGGAAGC 58 7791631 7791650 GGATTCTTCTTGAGAACGAC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab39 FBgn0029959 FBtr0071072 1 1 1 65 X 7630237 7630255 ATATAAGGCGGAGGATGGA 59 7630284 7630302 AAGTCCAGACTATTGGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14436 FBgn0029902 FBtr0070977 2 1 1 152 X 6694188 6694206 GATGATGCGATGGATTTGG 59 6693832 6693850 GTAAAGCCAGATAACGTGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14439 FBgn0029898 FBtr0070960 1 1 1 119 X 6649035 6649053 TGTGATGAACAACATTGGC 58 6649136 6649214 AGAATAGAACTGATGCCGT 58 NA Drosophila melanogaster 50 CG17717 FBgn0029877 FBtr0070944,FBtr0070943 2 2 2 87 X 6484216 6484234 CTGATTGTGAAGCATCTGC 59 6484350 6484368 TATTATCCATGCACTGCAG 57 NA DesignNoJunction Drosophila melanogaster 50 Rpt4 FBgn0028685 FBtr0070929 3 1 1 93 X 6184932 6184951 GTCGGAGAACGATCTAAAGG 59 6184795 6184879 GGCCTTCACAATGAATTTATCC 59 NA Drosophila melanogaster 50 Tsp5D FBgn0029837 FBtr0114466,FBtr0070888 3 2 2 148 X 5964737 5964899 CCTGGTATTGTACTTTATGCTG 58 5964610 5964629 GATCGCTGCTGTTATAATGC 59 NA Drosophila melanogaster 50 Act5C FBgn0000042 FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822 2 4 4 112 X 5797605 5797623 AGGATCTGTATGCCAACAC 59 5797699 5797717 CTTGATCTTCATGGTCGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ctp FBgn0011760 FBtr0070706,FBtr0070707,FBtr0070705,FBtr0070704 3 4 4 185 X 4585719 4585738 CAGTGAAGTTGTAAGCACAC 59 4592338 4592356 CTCCTTCTTGATGTAGGCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12688 FBgn0029707 FBtr0070653 3 1 1 74 X 4275981 4275999 AGGAGACCAAGAAGATCCA 59 4277107 4277125 TCGGAGTGTCCTCTAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3626 FBgn0029706 FBtr0070652 2 1 1 83 X 4263412 4263498 ACCTATAAGGAATTGGATGTGG 59 4263541 4263560 TAGGACATAGCCCAATTCAC 59 NA Drosophila melanogaster 50 CG9904 FBgn0040336 FBtr0070442 1 1 1 60 X 2515304 2515323 GGTACATCATGTTCAACTGG 58 2515412 2515430 AACAGATTGGTGCTAATGG 57 NA DesignNoJunction Drosophila melanogaster 50 egh FBgn0001404 FBtr0070440,FBtr0070439 2 2 2 128 X 2491030 2491048 CAGTTATGTGGTCACCCAG 59 2491451 2491469 ATGAAGTTGAACGTGTAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14045 FBgn0040387 FBtr0070463 3 1 1 99 X 2278343 2278361 TCAGCGATTCAACTTCCAG 59 2277627 2278281 GGGAACTGAGTTTAAATGGC 59 NA Drosophila melanogaster 50 csw FBgn0000382 FBtr0070378,FBtr0070379,FBtr0070380 2 3 3 112 X 2005069 2005087 AAGTTCGTCTACTATGCGG 59 2005161 2005246 CCCGTGTACTTTATATTGGTG 58 NA Drosophila melanogaster 50 CG14814 FBgn0023515 FBtr0070369,FBtr0070370 2 2 2 95 X 1756984 1757068 CAAGCGCAAACTTAACCAG 59 1756907 1756925 AGTTCGTGTATCAAGGTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 pck FBgn0013720 FBtr0070256,FBtr0070255,FBtr0100198 1 3 3 103 X 1365543 1365561 CTCTCGCTTACCATCATCC 59 1365628 1365700 ATGAACAGAGACGAGATGG 58 NA InUTR Drosophila melanogaster 50 CG14627 FBgn0040361 FBtr0070199 2 1 1 67 X 1076442 1076460 AGATGGAGACCAACTTCAC 58 1076491 1076509 AGTAGACGGTAAACTGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sdk FBgn0021764 FBtr0070132,FBtr0070131,FBtr0070133,FBtr0070130 3 4 4 90 X 631306 631548 ACCTGGATATACAATGAGACAC 59 631599 631617 ATCGGATGTTCGAGATGAG 58 NA InUTR Drosophila melanogaster 50 RpL36 FBgn0002579 FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156 1 4 4 114 X 522710 522792 TTGAAGAACATCCAAACCC 57 522614 522632 TATCCTTGGACACCTTCAG 58 NA Drosophila melanogaster 50 CG13366 FBgn0025633 FBtr0070161,FBtr0110791 1 2 2 98 X 508046 508613 AGATGCAGAGTCTACAGGA 59 507966 507984 GTGAGTTTACTACGTCCCG 59 NA Drosophila melanogaster 50 ac FBgn0000022 FBtr0070072 1 1 1 60 X 264647 264666 AAGACTACCGTAACAATTCC 57 264688 264707 ATATAGTCGAGGATGTCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR41571 FBgn0085804 FBtr0114258 2 1 1 60 U 5607594 5607615 GATCGATTCATTGGAGTTAGAG 58 5607555 5607573 AACTCACCTGAAAGACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR41548 FBgn0085802 FBtr0114256 1 1 1 60 U 9796437 9796458 GATCGCAAGATCGTTATATTGG 59 9796478 9796497 GTACAAGACCATACGATCTG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41423 FBgn0085644 FBtr0114088 2 1 1 89 U 2928080 2928100 CCATGAAGGACTTTATGTGTC 58 2928535 2928554 GGATACTTTGCCTTGTACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41521 FBgn0085666 FBtr0114113 3 1 1 64 U 2919167 2919185 ACAACCAAGGTTCATTTGG 58 2919212 2919231 AGAATTGGACATTATAGCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mitf FBgn0067895 FBtr0100347,FBtr0100348 1 2 2 80 4 1224345 1224363 AAGCTCGTTACAGTCTACC 58 1224406 1224998 AATGATGGTAGCTCAGAGAC 58 NA Drosophila melanogaster 50 plexA FBgn0025741 FBtr0089226,FBtr0089223 2 2 5 81 4 1040636 1042882 CCATGTGTTCTAACGAAACTG 59 1040575 1040593 GGGTTTCTCCTCCTAAAGG 58 NA Drosophila melanogaster 50 eIF4G FBgn0023213 FBtr0089243,FBtr0112904 1 2 2 84 4 941816 945718 CCTATCACTGATGAAACGGA 59 941751 941769 GATGGGTCTGATTAGGTGG 59 NA Drosophila melanogaster 50 CG9935 FBgn0039916 FBtr0089102,FBtr0110907,FBtr0110906 2 3 3 81 4 663046 663127 CATTCTTGAGTCAGAGCCA 59 662983 663001 GTGTGATTGTTCCAGTGTC 58 NA Drosophila melanogaster 50 CG1815 FBgn0039863 FBtr0085822,FBtr0085823,FBtr0085824 1 3 3 80 3R 27501824 27501843 GGTTCACAAATCTATCCCTC 57 27501884 27502037 GAAGTAGTCGGTTATCTTGTG 58 NA Drosophila melanogaster 50 CycG FBgn0039858 FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799 2 5 5 91 3R 27426460 27426478 ACATCAAGGAGTCGTACAC 59 27426317 27426407 ATCAGGAATCCTCATGTACTG 58 NA Drosophila melanogaster 50 CG11333 FBgn0039850 FBtr0085789 3 1 1 132 3R 27289386 27289404 GTTCTCTATGCTGGTGGAG 59 27289561 27289580 ATCATTTACCAGGTCGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1750 FBgn0039836 FBtr0085767,FBtr0085768 3 2 2 127 3R 27079897 27079915 GATCTGCATGCATCTTTGG 59 27079733 27079807 GTAATCTTGGGAGCATAGCT 59 NA Drosophila melanogaster 50 chp FBgn0000313 FBtr0085778 3 1 1 81 3R 27032427 27032500 AATTCGCTGATGAACACGA 59 27032364 27032382 GGATCCAGTTGTAGCTGAG 59 NA Drosophila melanogaster 50 Tpi FBgn0086355 FBtr0085582,FBtr0085584,FBtr0085583 3 3 3 108 3R 25959111 25959129 CAACATCTCCAAGGAGGTG 59 25959021 25959039 CAGGAAGCCATCTATGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7816 FBgn0039714 FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921 3 6 6 81 3R 25690544 25690624 GGGCGATAATCAAGATCCT 58 25690481 25690500 GATCGTGAAGATCAGTATGC 58 NA Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 1 7 8 81 3R 24639657 24639675 TACTGCTACGGATATTGGC 58 24639719 24640879 GCTCAAACACCTTATAGCAG 58 NA Drosophila melanogaster 50 Hrb98DE FBgn0001215 FBtr0085302,FBtr0085298,FBtr0085299,FBtr0085301 2 4 6 95 3R 24429336 24429354 GCAATCAAGGCAACTATGG 59 24429413 24429793 TACTTTATCACCTCGTCCG 58 NA InUTR Drosophila melanogaster 50 Moca-cyp FBgn0039581 FBtr0085286,FBtr0085287 1 2 2 110 3R 24168519 24168608 CGAGATACCAGAGGTATCGA 59 24168681 24168699 TGATCTTTGCCTCGATCAC 59 NA InUTR Drosophila melanogaster 50 CG34437 FBgn0085466 FBtr0112738 3 1 1 70 3R 24109731 24109749 ATAACAACTGCTAGTTGCG 58 24109842 24109862 GGTATATTGTCAAACCTTCCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6330 FBgn0039464 FBtr0085085 2 1 2 147 3R 22777615 22778738 AAAGGATAACGCGGTACTC 59 22777131 22777505 ATGCAAACGAACTTAACGTC 59 NA Drosophila melanogaster 50 CG6460 FBgn0039439 FBtr0085053 1 1 1 141 3R 22453954 22453972 CTGATATCGGTGATCTGGC 59 22453831 22453849 AACTGATCGTACTGACCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8932 FBgn0039390 FBtr0084944 1 1 1 108 3R 21736612 21736630 ATCGTCATCTATGTGCCAG 59 21737020 21737038 AATTCCGCTGAATAACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31380 FBgn0051380 FBtr0084918 1 1 1 60 3R 21615039 21615060 AACTATGGTGCTATCCTAACAC 59 21615000 21615018 GATGTTCCTCGACTATGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 niki FBgn0045980 FBtr0084737 1 1 1 94 3R 20649804 20649878 AACAAAGGGTACTCCTATGAG 58 20649730 20649748 ATGGACACATTGCTGTAGG 59 NA Drosophila melanogaster 50 nAcRalpha-96Ab FBgn0000039 FBtr0084640,FBtr0084639 1 2 2 86 3R 20313318 20314186 GTGATCAGATCGATTTGAAGC 59 20314234 20314252 GATAGTACTCACGCAGGTC 59 NA Drosophila melanogaster 50 HDC15381 FBgn0086610 FBtr0113461 2 1 1 156 3R 20203015 20203033 TGTACGATGTTGTGGAGAC 59 20203209 20203300 TTATCCAGGGATGGAACCA 59 NA Drosophila melanogaster 50 jar FBgn0011225 FBtr0100171,FBtr0100172,FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173 3 6 6 83 3R 20083624 20083702 ATATTGGATGCCAATCCCG 59 20083559 20083577 GAACTTTCCAAATCGCGAG 59 NA Drosophila melanogaster 50 Mpk2 FBgn0015765 FBtr0084580 2 1 2 90 3R 19977630 19977648 GGAATGGAGTAATAGCGCA 59 19977458 19977576 TTAATGGTGCCTCTGTTCC 59 NA InUTR Drosophila melanogaster 50 CG10365 FBgn0039109 FBtr0084447,FBtr0084448,FBtr0084446,FBtr0084449 1 4 4 107 3R 19554819 19554837 ATTCGAGGATATGTTCGCC 59 19555685 19556379 AGTGATTCCCTCTTTGTCC 58 NA Drosophila melanogaster 50 orb FBgn0004882 FBtr0100228,FBtr0084386,FBtr0084385,FBtr0084384,FBtr0100227 3 5 5 80 3R 19092487 19092506 TGATTCTCACTGTGGTAGGA 59 19092371 19092446 CAAGGAATGACTTCAACATCC 59 NA Drosophila melanogaster 50 CG5391 FBgn0038943 FBtr0084242 3 1 1 72 3R 18159011 18159029 TCAAGCTAAAGAAGGGCAG 59 18158957 18158975 AAATCGTAGTCGAACTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ND42 FBgn0019957 FBtr0084172 1 1 2 136 3R 17854857 17854942 ATGTCTGGTTCAATGCTCC 59 17855042 17855060 TCAACTCGAAAGCATAGCA 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG31465 FBgn0051465 FBtr0084147 1 1 1 92 3R 17708830 17708848 AATCAATCGTCGGAAGAGG 59 17708961 17708979 CCAGGATCCGTTTAGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Fancd2 FBgn0038827 FBtr0083995 1 1 1 81 3R 16640970 16640988 GGACATCATAGCCAATGCT 59 16640802 16640928 GGAATAGTTGATGTTAAGCAGC 59 NA Drosophila melanogaster 50 CG15923 FBgn0038814 FBtr0113254 1 1 1 80 3R 16438766 16439051 TATCGACCATGCTATCAAGG 59 16438705 16438723 TCTATTTCGCAGTTCAGCA 59 NA Drosophila melanogaster 50 CG4335 FBgn0038795 FBtr0083894 3 1 1 60 3R 16233397 16233418 ATCTACCAGCTGATATAATGCC 59 16233358 16233377 TGCACTTGTAGATTCATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr92a FBgn0045471 FBtr0083865 3 1 1 60 3R 15947020 15947039 TCCTACAAGTTCTTCATGGT 58 15947062 15947080 AAGATAACTGCAACGTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GluClalpha FBgn0024963 FBtr0083787 1 1 4 161 3R 15591450 15591468 GATAGCAATGCAACGTTCG 59 15592362 15593260 TCTAGAACATTGTCTTGTGGG 59 NA Drosophila melanogaster 50 CG31219 FBgn0051219 FBtr0113400 2 1 2 104 3R 15477463 15477481 AAGATCATAGTGCATGGGC 59 15477549 15477679 GATTCCTGTCCTATAGCGC 59 NA Drosophila melanogaster 50 CG3734 FBgn0038700 FBtr0083755 3 1 1 81 3R 15215343 15215425 ACTATTATTCCAGAGCATGCC 59 15215466 15215486 CTTTGGAAGCTCTCATTTCAG 59 NA Drosophila melanogaster 50 CG7714 FBgn0038645 FBtr0083686 1 1 1 60 3R 14551903 14551921 CCGTTCCTCAATATACGGA 58 14551861 14551879 AACTTGAATCCTGACTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7675 FBgn0038610 FBtr0083582,FBtr0083583,FBtr0083581 3 3 3 130 3R 14205050 14205068 ACAGTCATTATCACAGGCG 59 14204680 14204956 ACGATCTCATCCTTCACTG 58 NA Drosophila melanogaster 50 CG14316 FBgn0038567 FBtr0083546 3 1 1 60 3R 13978775 13978794 TTGAGGATCATATCAAGTGC 57 13978816 13978835 TCCGTCAGATTTATACAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7794 FBgn0038565 FBtr0083540 1 1 1 95 3R 13850106 13850189 ATCCTTCGCCTTCAATCTC 59 13850247 13850266 CAATAAACGATACATCGGCG 59 NA Drosophila melanogaster 50 osa FBgn0003013 FBtr0089581,FBtr0089582,FBtr0089583 3 3 3 111 3R 13533853 13533871 ACATCTCAATATTCGCCGT 59 13533696 13533778 GATTCGGTTCGGGATACTG 59 NA Drosophila melanogaster 50 CG14893 FBgn0038451 FBtr0083331 3 1 1 113 3R 12447303 12447321 ACTTTCCCAACACCTACAC 59 12447398 12447475 CATGGGTCGCAATTATGAC 58 NA Drosophila melanogaster 50 glob1 FBgn0027657 FBtr0083247,FBtr0083246,FBtr0083248,FBtr0083245 1 4 4 109 3R 11723133 11723277 CTTACAACCAACTGAAAGGAG 58 11723044 11723062 GATTCCGTAGACATGGTCC 59 NA Drosophila melanogaster 50 rec FBgn0003227 FBtr0083193 2 1 1 60 3R 11657250 11657270 GACATGATCTAGTTGATGCTG 58 11657210 11657228 TTAAGGATGCCAGTTACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18519 FBgn0038348 FBtr0083153 1 1 2 89 3R 11366293 11366380 TCTTATAAGATCTTGCCCAGAG 59 11366225 11366243 AATCCTGTGCTGAATGTCC 59 NA Drosophila melanogaster 50 CG18522 FBgn0038347 FBtr0083154 2 1 1 81 3R 11361060 11361079 GGAGGGAAAGATTATCCGTG 59 11360776 11361018 GGGCATAATCTTGTAGGAGTC 59 NA Drosophila melanogaster 50 CG6130 FBgn0038334 FBtr0083107 1 1 1 60 3R 11208307 11208325 CATTGAGCTGATCATGGAG 57 11208265 11208284 GGTATCGATTAACATGTCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34316 FBgn0085345 FBtr0112514,FBtr0112515 3 2 2 83 3R 11056745 11056763 CAAATCCTTATACACCGCC 58 11056810 11056894 TTTGTAATGGAGGTTTCGG 57 NA Nonspecific Drosophila melanogaster 50 CG6974 FBgn0038285 FBtr0083042 3 1 1 60 3R 10904602 10904620 CACGAAGTTGTCCTTAACG 58 10904560 10904580 GGGTTTCGTGTTGAATTACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14852 FBgn0038242 FBtr0082957 2 1 1 176 3R 10391987 10392006 CTAGTCCTTCAACAGGATCG 59 10392145 10392163 TATTCCTGTTATTGCGACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082802,FBtr0082801,FBtr0082806 1 3 8 95 3R 9488692 9488710 ATCATCCTCTCGTTATGGC 58 9488769 9491188 TAATCCTTGAGATCCTGCC 58 NA Drosophila melanogaster 50 CG33929 FBgn0053929 FBtr0091933 3 1 1 136 3R 8720054 8720072 TTCCTCATTCGAATACTGC 57 8719864 8719955 CAACTGGATATCCTTTCCAG 57 NA Drosophila melanogaster 50 Octbeta3R FBgn0053959 FBtr0099996 2 1 5 137 3R 8344783 8344895 ATCTTTAAGGAGGCGATTCG 59 8344665 8344684 ATTCAGATCACAGTCACTGG 59 NA Drosophila melanogaster 50 GstD6 FBgn0010042 FBtr0082573 1 1 1 60 3R 8203071 8203090 TTCGTTATTTGGGAAACTCG 58 8203113 8203131 CATCCTTACCGTACTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3809 FBgn0037995 FBtr0082545 2 1 1 60 3R 8023906 8023926 CTTTCGAACTTCCTTTAGGAG 58 8023948 8023966 TGGTAGATCCATTCTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082455,FBtr0082454 1 2 6 133 3R 7419485 7429878 CAAAGCAAAGAAGAGGGTG 58 7419370 7419388 CATTATCTTTCTCGGCAGC 58 NA Nonspecific Drosophila melanogaster 50 RpS25 FBgn0086472 FBtr0082369,FBtr0082370 2 2 2 126 3R 7041512 7041530 GAAGCTGTACAAGGAAGTG 58 7041336 7041422 CTTGATCAGACCCTTCTCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG4509 FBgn0037840 FBtr0089880 3 1 1 116 3R 6671487 6671574 GTTCGCATCAAGCATAACC 59 6671654 6671672 GCGGTTCTCAATTACATCC 58 NA Drosophila melanogaster 50 Rbp1 FBgn0010252 FBtr0082278,FBtr0082277,FBtr0082276,FBtr0082275 2 4 4 75 3R 6610338 6610356 TATAGGGAGTGGGACTTGG 59 6610395 6610413 CTTCTATCTCGTGCTTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Takr86C FBgn0004841 FBtr0082315,FBtr0112789 1 2 2 80 3R 6565219 6566919 GACCAAGCACTATTACAATGG 59 6565159 6565178 GCCATAGAAGTGGGATATCG 59 NA Drosophila melanogaster 50 CG31477 FBgn0051477 FBtr0082180,FBtr0113408 1 2 2 60 3R 5947869 5947887 ATGTGAAGTTCACTCCGTG 59 5947911 5947929 TCACGTTCTACCTTCTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8147 FBgn0043791 FBtr0082060,FBtr0100522 2 2 2 60 3R 5321990 5322009 TGATCTTCCATATGCCACTC 59 5322029 5322050 GAGGTAGTTACTATCATAGCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34135 FBgn0083971 FBtr0110905,FBtr0110904 1 2 2 60 3R 4576502 4576520 GTGATGTATTTACTGGCGG 58 4576394 4576415 GCTTGAAGTGAATGATCATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3014 FBgn0037519 FBtr0081773 3 1 1 129 3R 3627339 3627357 TACACTATCTCGCTGACCA 59 3627038 3627056 GATTCTCGTCCTTGACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 gfzf FBgn0053546 FBtr0114531,FBtr0091512 1 2 2 122 3R 2972596 2972675 TACTCGAAGATGAATCCGC 59 2972492 2972510 ATATAGCGTTGAATCCGGC 59 NA Drosophila melanogaster 50 CG2911 FBgn0037350 FBtr0113194,FBtr0078740 2 2 2 67 3R 1448390 1448408 GCCCGACTTCTATGAACTC 59 1448341 1448359 TGTAGCTGCACTTGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pi4KIIalpha FBgn0037339 FBtr0078756,FBtr0078757 1 2 3 186 3R 1388606 1388694 AAGTTGAGATCAACACCGT 59 1388438 1388456 TTCTGAATAACAGCATCGC 58 NA Drosophila melanogaster 50 CG12162 FBgn0037329 FBtr0078681,FBtr0078680 2 2 2 269 3R 1294733 1294751 CTGCTAGTTCGGTCTACTG 59 1295039 1295057 AATCGAAGGAGTATCCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Hus1-like FBgn0026417 FBtr0078876 3 1 1 60 3R 634734 634755 ATCAGGAGTACATAGTTCTAGG 57 634695 634714 AGCACAGATAAAGCTCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9809 FBgn0037248 FBtr0078946,FBtr0078945 3 2 3 191 3R 252655 252673 AAGGAGATACCTTTGAGGC 58 252359 252447 AGTCGTTGTAAATCAGCAG 57 NA Drosophila melanogaster 50 CG9809 FBgn0037248 FBtr0078946,FBtr0078945 1 2 3 155 3R 252619 252637 AGTCTGAGCCGATATTCTG 58 252359 252447 AGTCGTTGTAAATCAGCAG 57 NA Drosophila melanogaster 50 CG9766 FBgn0037229 FBtr0078980,FBtr0113191,FBtr0078979 3 3 3 185 3R 95720 95739 CATTCTGCTGAACAAGAAGG 59 95495 95572 CTAGCGTTCATAACCACTG 57 NA DesignRelaxed Drosophila melanogaster 50 snoRNA:Psi28S-2566 FBgn0086661 FBtr0091666 3 1 1 67 3L 18889359 18889377 GTTGAATTACCTGAGTGGG 57 18889310 18889329 GAATTAGATGGTTTGCAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR15821 FBgn0035311 FBtr0072914 2 1 1 64 3L 2172118 2172189 AAATTGGGAATGGCTTCAG 58 2172072 2172090 TTGATCCGCCTATCTATGG 58 NA DesignRelaxed Drosophila melanogaster 50 pncr014:3L FBgn0046272 FBtr0091955 1 1 1 75 3L 14027883 14027901 CGATGTAAGACAGTTGTGG 58 14027826 14027844 CTATTGCAATCTGCTTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32489 FBgn0046767 FBtr0076761 2 1 1 60 3L 7996349 7996367 ATCGTTTGATACAAGCCAG 57 7996391 7996409 CTACCCTATTTCTGCACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Cat FBgn0010215 FBtr0070038 1 1 1 80 3L 23324108 23327476 GGATAATATGAGGCAATTCGG 58 23324048 23324067 GGATCCTTAAGTTCTTGCTG 58 NA Drosophila melanogaster 50 S1P FBgn0037105 FBtr0078466 2 1 1 134 3L 21609638 21609656 AAGTCACTTGACGACAGAG 59 21609464 21609541 GTAAGAAACTTGGGAGTTCG 58 NA Drosophila melanogaster 50 CG10565 FBgn0037051 FBtr0078323 1 1 1 94 3L 21128002 21128478 CTTACGAGATACTGGGCAC 59 21127926 21127944 ATCGATGTCGTTCTGTGAG 59 NA Drosophila melanogaster 50 Las FBgn0029158 FBtr0078229,FBtr0078228 3 2 2 149 3L 20424698 20424929 GCCACGATTATGCTTATGG 58 20424567 20424588 CAGAACAATGTAATCCAATCCC 59 NA Drosophila melanogaster 50 eRF1 FBgn0036974 FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177 3 6 6 81 3L 20344765 20344786 TGGAGATTATCACGGATAAGTC 59 20344828 20345922 TTGTAGCGTAAGATACCGC 59 NA Drosophila melanogaster 50 Ac76E FBgn0004852 FBtr0074897 3 1 1 98 3L 19967921 19967999 GCATTAACAAGATTCTGCTGG 59 19968059 19968077 AGTAGCTCTCGTGGTAGAG 59 NA Drosophila melanogaster 50 mRpL21 FBgn0036853 FBtr0075022 1 1 1 62 3L 19247703 19247721 GATATCATCCTGGTGGAGG 58 19247659 19247677 CTTATCCAGGCTGATCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3819 FBgn0036833 FBtr0075048 3 1 1 68 3L 18914285 18914304 ATGTGGACAAGCTATACACG 59 18914236 18914254 ATGAATCCATGTCCAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7320 FBgn0036782 FBtr0075128 2 1 1 60 3L 18196194 18196214 GAGGAGGAAACATTCAAAGAG 58 18196235 18196254 TATATCACAGTCAGGAACGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gk FBgn0020300 FBtr0075126 3 1 1 137 3L 18136678 18136696 GAAGACCAAGTCCCAACTC 59 18136794 18138033 ATTGTTGGAGATCTGATCAGTC 59 NA Drosophila melanogaster 50 Tsp74F FBgn0036769 FBtr0075154,FBtr0075155 2 2 2 93 3L 17886316 17886411 TTTGTGATATTCGTGGGTG 57 17886241 17886259 GATTTGTACCGAGCAACTC 58 NA Drosophila melanogaster 50 sec3 FBgn0086475 FBtr0075231 3 1 1 84 3L 17417198 17417277 GAGCTCAACAAAGTCATAAGTC 59 17417135 17417154 CATTGGCGGTCTTTAAATCG 59 NA Drosophila melanogaster 50 CG7692 FBgn0036714 FBtr0075215 3 1 1 80 3L 17346768 17346788 CTATTCCTTAACCTGAAGCTG 58 17346829 17346903 GAAAGCAACTTCTTCTCCTG 58 NA Drosophila melanogaster 50 CG33256 FBgn0053256 FBtr0075260 3 1 1 60 3L 16898138 16898159 GGAAATTGATGACGAAGATGAG 59 16898179 16898198 GTTGTTATCCGAGATTCCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32170 FBgn0052170 FBtr0075258 1 1 1 60 3L 16871927 16871945 AAACCACAGAGTAGACCAC 58 16871969 16871987 TAACAGGTGCATTGTAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9674 FBgn0036663 FBtr0075342,FBtr0075341,FBtr0075343,FBtr0075344 3 4 4 95 3L 16784163 16784181 GCAGACGATAATGTAACCG 58 16784031 16784104 CTCTCCATATTTGCATGCA 57 NA DesignRelaxed Drosophila melanogaster 50 CG32158 FBgn0052158 FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404 3 5 7 126 3L 16485860 16485879 ATTTGACTGGGATGTGAGTG 59 16485591 16485772 AATGATTGTCGTATCCCTCC 59 NA Drosophila melanogaster 50 CG13046 FBgn0036595 FBtr0075473 1 1 1 60 3L 16281275 16281293 TCTCACACCTGGATTACTC 57 16281233 16281252 GCGGGATAGTGATAGTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33689 FBgn0053689 FBtr0091669 3 1 1 72 3L 16193778 16193797 CAACATCAATCACACGTGTC 59 16193883 16193903 CGATTCTATATTTCCCGTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 brm FBgn0000212 FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523 3 4 4 160 3L 15964328 15964407 GGATACCATTCTAGGTCGAG 58 15964187 15964205 GATTCTTACGCTTTCGTCG 58 NA Drosophila melanogaster 50 Eig71Ek FBgn0014851 FBtr0075575 3 1 1 141 3L 15654551 15654572 GAATAGGACGATTTGATGAGAC 58 15654730 15654748 GACATATCATCACAGCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7276 FBgn0036499 FBtr0075546,FBtr0075545 1 2 2 60 3L 15491556 15491575 TACATTCGCTTGATGATAGC 57 15491595 15491616 GATTATAGGTCTTGTTTGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16959 FBgn0036481 FBtr0075655,FBtr0075656 2 2 2 238 3L 15114503 15115737 GATCAGGTCAAGAGAACCG 59 15114283 15114301 TCATAGCAAGACTCCTCTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG17081 FBgn0036480 FBtr0075638 3 1 1 121 3L 15120743 15120855 CAAACATTGGATCAGTTGCA 59 15120939 15120957 TGATTGTAGCGATCATCGG 59 NA Drosophila melanogaster 50 mnd FBgn0002778 FBtr0075627,FBtr0114529,FBtr0075626 3 3 3 86 3L 14983803 14983821 GTTAATTGCCTGACACCTG 58 14983959 14983977 TAGTACGTAGACGTCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17839 FBgn0036454 FBtr0075695 3 1 2 145 3L 14872646 14873309 GCGAAGTTAATGTCAGATGG 58 14873417 14873435 CATCGAGGAACCTGAATCC 59 NA Drosophila melanogaster 50 bmm FBgn0036449 FBtr0075699 3 1 1 89 3L 14770856 14771041 AAATTCACGCTCTATGACCA 59 14770786 14770804 CACAAGGATTGAAACACGG 59 NA Drosophila melanogaster 50 Ptp69D FBgn0014007 FBtr0075913 2 1 2 82 3L 12731790 12731876 AGAGATTCTTTGAGCAGGG 58 12731922 12731940 AATCCTTTGTGATTTCCGG 57 NA Drosophila melanogaster 50 mirr FBgn0014343 FBtr0075912,FBtr0075911 1 2 2 112 3L 12698330 12698348 ATCTGAAGGAGAACCTGGT 59 12698424 12700490 CAAATCCATGCCATAGCTG 58 NA Drosophila melanogaster 50 CG32103 FBgn0052103 FBtr0075983,FBtr0075982,FBtr0075984 1 3 3 146 3L 12398215 12398233 GTACCTGATGACTTCACAC 57 12398022 12398105 TCTTTGTGTTTGTACCTGC 58 NA Drosophila melanogaster 50 rols FBgn0041096 FBtr0076055,FBtr0076057,FBtr0076053 2 3 5 168 3L 12006171 12006190 TTTAACCACAAGAATCTGCG 58 12005822 12006040 GAGTATGATCTCCCGACAG 58 NA Drosophila melanogaster 50 CG6931 FBgn0036236 FBtr0076048 3 1 1 90 3L 11984177 11984255 ATATGCTCCCAACGATATTAGG 59 11984305 11984324 TGTGGTTTCTATGTTCTCCC 59 NA Drosophila melanogaster 50 mRpL2 FBgn0036135 FBtr0076211 1 1 1 60 3L 11114424 11114442 TGAGCTGAAGTACATCCTG 58 11114466 11114484 CGAGGTCTTGAGGATATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpr10 FBgn0052057 FBtr0076310,FBtr0076308,FBtr0076309 2 3 3 83 3L 10143594 10144087 CATCAGGATAAGGTGCTCAG 59 10143530 10143548 AATGGATTTGGTCTCCTCC 58 NA Drosophila melanogaster 50 CG6674 FBgn0036063 FBtr0076354 3 1 1 95 3L 9964533 9964551 AGATCGAGTTCAAGAGGAC 58 9964456 9964474 TTAACTGCGGCTTATCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18180 FBgn0036024 FBtr0076389 2 1 1 62 3L 9634498 9634516 CGAGACATTGGTCTGATCC 59 9634541 9634560 AGGGATCTTGTTGATCAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Shc FBgn0015296 FBtr0076458 2 1 1 61 3L 9420849 9420867 GTAGGCTCAATGATCCCTC 59 9420892 9420910 CTTCACATTCTCCTTGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF-4E FBgn0015218 FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487 3 7 7 96 3L 9393614 9393696 AAGAAGAACATTCGTCCCA 58 9393536 9393554 TATCCAGATCGGTCTTGGA 59 NA Drosophila melanogaster 50 CG5288 FBgn0035950 FBtr0076553,FBtr0076555,FBtr0076554 2 3 3 81 3L 8977959 8977978 GCTTCAACTCAGAAATCTCG 58 8977752 8977915 CTTTGGAAGCTCGATTCTG 58 NA Drosophila melanogaster 50 Cpr66D FBgn0052029 FBtr0076567 1 1 1 212 3L 8633926 8633944 ATCGGTCAGGGATTATCAG 58 8636162 8636180 AATCCAAACTGGTACGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17352 FBgn0035880 FBtr0076675,FBtr0076676,FBtr0100664,FBtr0076674 2 4 5 124 3L 8347400 8347418 CTACTACATTCGACTGCGT 59 8347236 8347254 ATATGCAGTGATTGTTCCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG8042 FBgn0027554 FBtr0076766 3 1 2 157 3L 7967277 7967416 CAAGTAGTTCAAACAGCATCAG 59 7967141 7967159 CTGGAGGTTGATACAGCAG 59 NA Drosophila melanogaster 50 CG14838 FBgn0035799 FBtr0076801 2 1 1 146 3L 7579461 7579479 ATTATAGAGGCAAAGCGGG 59 7579586 7579661 CTTCTTACCTTTGATCTCTTCG 58 NA Drosophila melanogaster 50 Rac2 FBgn0014011 FBtr0076867 2 1 1 61 3L 7427532 7427550 ATCAGCTATACGACCAACG 59 7427489 7427507 GAATAGTTGTCGAACACCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mus312 FBgn0002909 FBtr0076839 3 1 3 87 3L 7324322 7324400 AGCGACGAAGTAAAGACTG 59 7324516 7324537 TATCGAACTCTTGTGTTAGGTC 59 NA Drosophila melanogaster 50 mus312 FBgn0002909 FBtr0110926,FBtr0076840,FBtr0076839 2 3 3 82 3L 7323267 7323287 GATGAAGAGAAGTCCACTGAG 59 7323328 7323408 GATTTATAATCTTCCTTGGCGG 59 NA InUTR Drosophila melanogaster 50 CG32388 FBgn0045806 FBtr0076933 2 1 1 110 3L 6976930 6977010 GAAATTCAAATGTCTGCAGC 58 6976839 6976857 AATGGACCCGATTCATCTG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Lcp65Ab2 FBgn0020643 FBtr0076992 1 1 1 243 3L 6139827 6139845 ATTCCTCATCGTCTTCGTC 59 6140052 6140070 TGTGATGGTGAACTTCTCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10486 FBgn0035647 FBtr0114644 2 1 1 88 3L 5898841 5898859 GATACCTGCTTTACGATGG 57 5898690 5898708 AAGGCCAGTGATAGATTGG 59 NA DesignNoJunction Drosophila melanogaster 50 S6k FBgn0015806 FBtr0077114 3 1 1 84 3L 5798978 5798997 CACAAGACAAATTCCAGTGG 59 5793803 5798931 AACGTAGGTGAAACCTTGG 59 NA Drosophila melanogaster 50 Pmi FBgn0044419 FBtr0091713,FBtr0091712 2 2 2 67 3L 5773860 5773941 TGTTGTCAATATCAGGTGGA 58 5773971 5773989 GAGGAGACATCTGTCAGTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 sif FBgn0085447 FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713 1 5 8 94 3L 5692112 5697030 GTTCCTTCGCAAGATTTCG 59 5697088 5697106 TATATGGTGACGCCATGAC 59 NA Drosophila melanogaster 50 sif FBgn0085447 FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713 2 5 8 95 3L 5692112 5697030 GTTCCTTCGCAAGATTTCG 59 5697088 5697107 TTATATGGTGACGCCATGAC 59 NA Drosophila melanogaster 50 CG10625 FBgn0035612 FBtr0077140,FBtr0077139 3 2 7 80 3L 5534467 5535606 ATTCCATACACTCCAGATAACG 59 5534342 5534361 GTGATAATACCGACCATCGT 59 NA Drosophila melanogaster 50 lama FBgn0016031 FBtr0077161,FBtr0077160,FBtr0077159 3 3 3 97 3L 5338824 5338842 AACTTATCCGGATTGGGTG 59 5338685 5338764 AGGAAATGGTATTGGACCAC 59 NA Drosophila melanogaster 50 CG18808 FBgn0042131 FBtr0073361 3 1 1 60 3L 4806474 4806494 ACTCATATAACCATGGACCAG 58 4806434 4806455 CGAGAGCAATAAATACTTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 axo FBgn0026729 FBtr0073368 2 1 1 91 3L 4673380 4674963 CAATTAAGACTTTGCCGTGAG 59 4673309 4673327 CGATCCGGATTCTTAACGT 59 NA Drosophila melanogaster 50 CG33514 FBgn0053514 FBtr0091456 3 1 1 60 3L 4365597 4365615 TAAGACATGGATCGAGCAG 58 4365638 4365657 CACCAGAAACTGATCATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ida FBgn0041147 FBtr0073160,FBtr0073161 3 2 2 60 3L 3905670 3905690 GGTATTCAAGCTCATTCAGGA 59 3905710 3905730 GGTCAACAAACTATGTAGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32264 FBgn0052264 FBtr0073186,FBtr0073187 3 2 5 92 3L 3718985 3721549 GGATTAGACTATGCAGGCA 58 3718911 3718929 TTTCGCGTATCACAAATGG 58 NA Drosophila melanogaster 50 CG11526 FBgn0035437 FBtr0073083,FBtr0073084 3 2 2 105 3L 3322982 3323003 GATTACTTCAAGGCCAATTACG 59 3322831 3322916 ATATTAGAGCAGCGATGGC 59 NA InUTR Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996 2 6 15 81 3L 3083796 3085208 TCGCCACTTATATGGTCAC 59 3085252 3085271 TATGGTGCATAGAAGTTGGG 59 NA Drosophila melanogaster 50 CG13802 FBgn0035330 FBtr0113127,FBtr0072886 3 2 2 60 3L 2299244 2299264 CCTTCTTTCTGCAATGTTACC 59 2299774 2299793 TTAATAAGCGCCAAGATGTC 58 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG13937 FBgn0035287 FBtr0072863,FBtr0072861,FBtr0072862 2 3 3 60 3L 1877653 1877771 CACATTATCTGGTGCAATGTC 59 1877613 1877631 CGTTGAAGTTGAACATCCA 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Patj FBgn0067864 FBtr0072781,FBtr0072780,FBtr0072779 1 3 3 111 3L 1800627 1800645 AGTAAGGGACTCCCTAGAC 58 1800780 1800798 GTAGTACTTGTGACGGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 alpha-Spec FBgn0003470 FBtr0072789 1 1 1 133 3L 1781201 1781219 AAGATCATAGAGGAACGCG 59 1779977 1781104 ATGGACGTTCTTGTCTCTG 59 NA Drosophila melanogaster 50 Dhc62B FBgn0013811 FBtr0072793,FBtr0072794 1 2 2 82 3L 1769261 1769341 CAAATTCAAGGGTCAAACTG 57 1769198 1769216 TTGACTGTATCATCGAGGT 57 NA Drosophila melanogaster 50 CG9119 FBgn0035189 FBtr0072635 1 1 1 73 3L 1204613 1204631 GAACCAACTGAGTACGGAG 59 1204558 1204576 TCTGCAACTCTGACAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13900 FBgn0035162 FBtr0072597,FBtr0072598 1 2 2 167 3L 827894 827912 AACTGGAGGATATTCGCAC 59 827204 827222 TGGTCTAATGGTCATTGGA 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG1233 FBgn0035137 FBtr0072549,FBtr0072548 1 2 2 132 3L 364782 364800 CCTGTGATCATGAGACCAG 59 364896 364975 TGAAGGTGTATCCGAAAGG 58 NA Drosophila melanogaster 50 fwd FBgn0004373 FBtr0072516,FBtr0072515,FBtr0072517 2 3 3 81 3L 307029 307047 GAAGAACTTCGTCCAAAGC 59 306902 306984 AATGTTGCCATTATGCCTG 58 NA Drosophila melanogaster 50 miple FBgn0027111 FBtr0072505,FBtr0072504 2 2 2 158 3L 268949 269103 ACAAAGATAAAGCTGCTCG 58 269225 269243 ACATAGCAGACAGTTAACG 57 NA InUTR Drosophila melanogaster 50 pyx FBgn0035113 FBtr0072524 2 1 2 84 3L 222205 222277 TTTCCTGGAACTAATGACCG 59 222140 222159 GAGAGTATTCTCTACGCTCC 58 NA Drosophila melanogaster 50 5SrRNA:CR33438 FBgn0053438 FBtr0086430 1 1 1 62 2R 15622372 15622390 AATACATCGGTTCTCGTCC 59 15622328 15622346 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3760 FBgn0022343 FBtr0072391,FBtr0072392 2 2 2 124 2R 20826705 20826723 TCCAAGACCTACGTTTCAC 59 20826863 20826882 AACTCGGTATTGGTGATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 bs FBgn0004101 FBtr0072271 3 1 1 203 2R 20235971 20262943 CGAGGACTCGAAAGATGAC 59 20263110 20263128 TGATAGTTCAATGCTGGCA 59 NA DesignRelaxed Drosophila melanogaster 50 PebIII FBgn0011695 FBtr0072164 2 1 1 62 2R 19914543 19914561 GATGATACTTGCGCTTGTC 58 19914587 19914605 GTGGTGTACTTATCCTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16787 FBgn0034940 FBtr0072207 1 1 1 60 2R 19844214 19844232 CTACACAGTGCGGATAAGG 59 19844172 19844190 CTGGAACATGACCTTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TM4SF FBgn0020372 FBtr0100255,FBtr0072130 2 2 2 140 2R 19767863 19767957 ATAGCCATATTCCAGAGCC 58 19768061 19768079 CTTGTCCTGTATGGTCAGG 59 NA Drosophila melanogaster 50 Ssrp FBgn0010278 FBtr0072242 3 1 1 134 2R 19694612 19694691 AGAGAACAAAGAAACCCTCC 59 19694497 19694515 TCTCGGTAACCTTTATGCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG17662 FBgn0034884 FBtr0072106 2 1 1 60 2R 19493323 19493341 GATCGATCTGAGGACTTCC 58 19493281 19493301 CTATTGCACTATAACCTCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5398 FBgn0034882 FBtr0072071 1 1 1 256 2R 19490580 19490598 TTCCTTGGTTACTTCCTGC 59 19490818 19490900 GTTAGTTGAATCCCTGCGA 59 NA DesignRelaxed Drosophila melanogaster 50 eIF2B-delta FBgn0034858 FBtr0072014,FBtr0072015,FBtr0072013 3 3 3 88 2R 19276380 19276398 TGAGCTACGACATTACTCC 58 19276450 19276468 GAGTATGACGGGAACACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34371 FBgn0085400 FBtr0112596 1 1 1 81 2R 19058172 19060020 ATCTCCTCACGATGTACAC 58 19058109 19058127 TTCATGTCGAGGATAACCT 57 NA Drosophila melanogaster 50 l(2)k09913 FBgn0021979 FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961 1 4 4 99 2R 18958340 18958358 GAGATGGGATTCGATGTGG 59 18958497 18958515 GGAATCGAATAGTCTCGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30193 FBgn0050193 FBtr0071948,FBtr0071949,FBtr0071946,FBtr0071944 3 4 7 80 2R 18813126 18814633 GGCTTATAATATTGTTCTGCGG 59 18814673 18814692 ATTCCTTGACATCCTTGGTC 59 NA Nonspecific Drosophila melanogaster 50 CG9826 FBgn0034784 FBtr0071894 3 1 2 126 2R 18729603 18729621 TTATTCCCATCCTCACACC 58 18729792 18729810 ATGATGAATACCACGTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG30259 FBgn0050259 FBtr0071921 2 1 2 81 2R 18591494 18591512 CACATAGAATCCACCGAGG 59 18591139 18591452 TATGGGTATCAACTATCCTGGT 59 NA Drosophila melanogaster 50 robo FBgn0005631 FBtr0071923,FBtr0071922 1 2 2 80 2R 18584836 18584921 GACACTCAAGTCACTATCTCG 59 18584776 18584796 AATACCCTGAGTATTCTCAGC 58 NA Drosophila melanogaster 50 CG3290 FBgn0034711 FBtr0071782 2 1 1 121 2R 18094151 18094238 TTGTGTTCATAGAGGGTGG 58 18094048 18094066 GATGTTGGTCATTTCACGA 58 NA Drosophila melanogaster 50 Gr58a FBgn0041239 FBtr0071728 1 1 1 60 2R 17868203 17868224 CCATAGAAACCTCAAGTTACAC 58 17868243 17868263 CAGTAATGAGAAATCACCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15675 FBgn0034648 FBtr0071664 1 1 2 80 2R 17553014 17553716 AGAACACTGGAATCTGTGC 59 17553759 17553778 TCATTTGTGACGAACATGTG 59 NA Drosophila melanogaster 50 CG10433 FBgn0034638 FBtr0071690 1 1 2 153 2R 17494012 17494030 TCGAACAAGGGATTGTGTC 59 17493603 17493621 CATTCTTGCAATCCGAACC 59 NA DesignNoJunction Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708 2 9 9 93 2R 17398737 17398915 TTTGCCAGAGGATTACGTC 59 17398972 17398990 ACCAATCACCGACTTTAGG 59 NA Drosophila melanogaster 50 Sdc FBgn0010415 FBtr0071706 3 1 3 130 2R 17286782 17286801 GAAAGATCCGGACTATTCTG 57 17286080 17286689 TATGAGCTGTGTTTATGCC 57 NA Drosophila melanogaster 50 Pu FBgn0003162 FBtr0071578,FBtr0071580,FBtr0071579 3 3 3 116 2R 17068988 17069006 AAATGTTCTCCATGTGCGA 59 17069086 17069163 ATATTTCGACAATGCGTGC 59 NA Drosophila melanogaster 50 Treh FBgn0003748 FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536 3 6 6 81 2R 16972827 16972845 TTTAATGCCATGATGGAGG 57 16972889 16972968 GTGCACTGAAGTACTTATCG 58 NA Drosophila melanogaster 50 Treh FBgn0003748 FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536 1 6 6 80 2R 16972826 16972845 CTTTAATGCCATGATGGAGG 58 16972887 16972966 GCACTGAAGTACTTATCGAC 58 NA Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494 3 7 7 152 2R 15418202 15419689 CTATTGAGGGTAAAGGCAC 57 15418068 15418087 CTCAATTGTAGATGTCCACC 57 NA Drosophila melanogaster 50 CG15086 FBgn0034374 FBtr0086651,FBtr0086649,FBtr0086650,FBtr0086648 2 4 4 61 2R 14567639 14567657 GGATCCTTACTACCAACGA 58 14567540 14567558 TGCATGATCCGTAGTTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10924 FBgn0034356 FBtr0086699,FBtr0113093 1 2 2 60 2R 14421137 14421157 GATGAAGTTCGATAACAAGGG 58 14421179 14421197 GCCAAAGAATCCATTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dp1 FBgn0027835 FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682 2 6 6 84 2R 14306395 14306413 GATCGATAAACGCATCCAC 58 14306458 14306564 GATGTTCACCTTATTATCCTCG 58 NA Drosophila melanogaster 50 thr FBgn0003701 FBtr0086825 3 1 1 82 2R 13752032 13752050 TATTAATTGGAAACCGGCG 58 13751910 13751931 CCATTGAGTATTTGACTACTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5002 FBgn0034275 FBtr0089546 2 1 1 81 2R 13638979 13638997 CACTTGACGTCAATTAGGC 58 13639042 13639285 CTTTAACACGCGTCATGAG 59 NA Drosophila melanogaster 50 Amy-p FBgn0000079 FBtr0087004 3 1 1 270 2R 13007775 13007794 ACTTCCATCTGGAATTACCA 58 13007524 13007542 CTTGTAGGAGATGGGTTGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 fat-spondin FBgn0026721 FBtr0086976,FBtr0086975 2 2 2 99 2R 12944820 12944898 AAGCCAAATACAGCTTCGT 59 12944961 12944979 ATCACGTCAGAGAAGTGTG 59 NA Drosophila melanogaster 50 CG9000 FBgn0034176 FBtr0087059 1 1 1 60 2R 12889048 12889067 CGAGGATACGTTCCATAAGG 59 12889007 12889025 GAAGATGCCGAATTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30461 FBgn0050461 FBtr0100249,FBtr0100251,FBtr0100250,FBtr0100252 3 4 4 60 2R 12883879 12883899 GCAGCTTATTCTCAGTAATCG 58 12883785 12883803 TTTCTTGATTCGCGAACAG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 unc-104 FBgn0034155 FBtr0087079 3 1 4 94 2R 12645901 12646139 GATACCTTCTAGGCAACGT 58 12645825 12645844 GGCTCTCCACATTATAGTCC 59 NA Drosophila melanogaster 50 Nach FBgn0024319 FBtr0089587,FBtr0089588,FBtr0087116 2 3 3 84 2R 12541208 12541228 GTGAACACATTGATTACGACG 59 12541078 12541164 AAGCCCGAATAGAACTTATCG 59 NA Drosophila melanogaster 50 RpLP2 FBgn0003274 FBtr0087105,FBtr0087106 3 2 2 94 2R 12473721 12473740 CTTAAACATGCGTTACGTGG 59 12473797 12473815 CAGAGCTGAGGATCTTCTC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Cdk4 FBgn0016131 FBtr0087104,FBtr0087103,FBtr0087102 2 3 3 114 2R 12470443 12470461 TAGGATATCGCTGAACGAG 58 12470537 12471672 GCATACTTCGTACAGTTTGAC 59 NA Drosophila melanogaster 50 CG8179 FBgn0034020 FBtr0087325 2 1 1 211 2R 11354265 11354358 AGATTGTCATACAGACCGG 58 11354533 11354551 TCTAATCCTACGCTTGGTC 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG34365 FBgn0085394 FBtr0112588,FBtr0112589,FBtr0112590,FBtr0112587 1 4 4 80 2R 11344304 11350806 TGATATCGAGGAAGAAACGTC 59 11350848 11350866 CTCTTGAGGAGCATCAGTG 59 NA Drosophila melanogaster 50 aPKC FBgn0022131 FBtr0110996,FBtr0110998,FBtr0110999,FBtr0110997,FBtr0110995,FBtr0087426 2 6 6 83 2R 10835446 10835464 CTCTATGAGATGTTGGCCG 59 10835324 10835401 CAGATAGTCCTCAGTGTTCTG 59 NA Drosophila melanogaster 50 CG12862 FBgn0033950 FBtr0087483,FBtr0087484 3 2 2 62 2R 10527938 10527957 TAGACCAGATAGCGGTAGAC 59 10527895 10527914 AGATCTCATAAATCTCCCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tra2 FBgn0003742 FBtr0089617,FBtr0089620,FBtr0089615,FBtr0089619,FBtr0089616,FBtr0089621 2 6 7 141 2R 10490376 10490678 GATTGACGCACAAACACAG 59 10490253 10490274 TTGGGTTATAGAGAAATCGACG 59 NA Drosophila melanogaster 50 Tfb1 FBgn0033929 FBtr0087548,FBtr0087549,FBtr0087550 3 3 3 126 2R 10251324 10251343 ACCTTGTCATAACCAAAGTC 57 10251490 10251508 TTTATGTCAGCCAGAAAGG 57 NA DesignNoJunction Drosophila melanogaster 50 SelD FBgn0020615 FBtr0087564,FBtr0087565 2 2 2 60 2R 10157196 10157215 TACCAAGATGACAGAGAAGG 58 10157155 10157175 CTTAAAGCCTCGCATTATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33156 FBgn0053156 FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681 1 5 5 82 2R 9436514 9436532 TTATGGTGACTCCCATCTG 58 9436391 9436470 TACTGATATCTTCAGCTCCAC 58 NA Drosophila melanogaster 50 CG17034 FBgn0033837 FBtr0087707,FBtr0087710,FBtr0087709 2 3 4 147 2R 9303455 9305089 ACTCTGCACATATTCACGG 59 9303067 9303085 TAATGATAGACTGCGGCAC 59 NA Drosophila melanogaster 50 CG8776 FBgn0033764 FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869 1 5 5 104 2R 8548250 8548271 CATAAGGTCAACTTCTATAGCC 58 8548111 8548185 CAGCATTACCAGAAAGCTG 58 NA Drosophila melanogaster 50 CG8646 FBgn0033763 FBtr0087846 3 1 1 89 2R 8544888 8544973 GATGATTTGGGCTTCAACG 59 8545025 8545044 AATAATGCCAGAATAGGCCA 59 NA Drosophila melanogaster 50 CG30055 FBgn0050055 FBtr0087827 3 1 1 94 2R 8477655 8477673 TCTCTTTGTGAGACACCTG 58 8477729 8477749 GTAGCTAGTTAGTTGCATGTG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG8525 FBgn0033735 FBtr0087927 1 1 1 231 2R 8313751 8313769 CACAGAGATCGACATTGTG 58 8314026 8314044 GTTGACTGTCTCCTTTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 Cpr49Ac FBgn0033725 FBtr0087917,FBtr0087916 2 2 2 89 2R 8276583 8276769 CGATCACTCTTACCTGACTG 59 8276821 8276839 TAGAATCCCTTGGCATGTG 59 NA Drosophila melanogaster 50 CG30015 FBgn0050015 FBtr0088243,FBtr0113356,FBtr0113357,FBtr0088242 2 4 4 159 2R 6730710 6730728 TCGGATATACTGCGATCAC 58 6730477 6730588 GAATGGAAGTCTCCAATGTC 58 NA Drosophila melanogaster 50 CG34363 FBgn0085392 FBtr0112584,FBtr0112585 2 2 2 80 2R 6226463 6226545 CTGGAGAACATGTTTAATGACC 59 6226404 6226423 TGATAGAATGGTCAACTGCT 58 NA Drosophila melanogaster 50 CAP FBgn0033504 FBtr0088342,FBtr0088343 1 2 10 128 2R 6180357 6180375 GTGTCTCCGACAAGATCAG 59 6180932 6181135 CTTTGTAGATGACTTCATTGGG 59 NA Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414 2 10 10 71 2R 5991854 5991872 TGTCGACAGTCGATAAGGA 59 5991904 5992232 TATCATCGTAACGTTCTGACTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG12128 FBgn0033473 FBtr0088393,FBtr0088394 1 2 2 60 2R 5914624 5914642 AGGATAAGCCTAATCCGTC 58 5914665 5914684 GCATTCTCGAGAATTGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pka-R2 FBgn0022382 FBtr0112902 3 1 5 179 2R 5885357 5885376 TGTACTTCATTGAGGAGGGA 59 5885045 5885216 TAACATCCAGGAATGCTAGC 59 NA Drosophila melanogaster 50 CG1648 FBgn0033446 FBtr0088493 3 1 2 137 2R 5707414 5707433 CAAACAAACTTACAAACCCG 58 5700121 5700139 TTCTTGCTGAAGAGGTTGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG34350 FBgn0085379 FBtr0112560 3 1 1 125 2R 4888981 4888999 CTAGAATGCCACTCACCAG 59 4885419 4888892 TACGACCAGATTGGAACTG 58 NA Drosophila melanogaster 50 Pgi FBgn0003074 FBtr0088679,FBtr0088681,FBtr0088680 3 3 3 105 2R 4799600 4799618 AATCTGTCTGTCCATTGGC 59 4799451 4799531 AACAGGAGCATTCTTCTCG 59 NA Drosophila melanogaster 50 stmA FBgn0086784 FBtr0088715,FBtr0100111,FBtr0088716 2 3 3 113 2R 4618186 4618264 TTTATCCTCGGAATCCAGC 59 4618091 4618109 ACTAACACGCGAGATTAGC 59 NA Drosophila melanogaster 50 CG30355 FBgn0050355 FBtr0088726 2 1 1 60 2R 4567145 4567166 TTCCTCTAAGCAAGAAAGAGAC 59 4567106 4567125 CTTAGCCTCAAGGGTAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vps25 FBgn0022027 FBtr0088694 1 1 1 151 2R 4513455 4513473 CTGTACGAAATAGCCTCCG 59 4513588 4513606 TAGAAGAACTTAACGCCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Odc1 FBgn0013307 FBtr0088863 2 1 1 89 2R 3893657 3893675 TACTATCTGAATGACGGCG 58 3893728 3893876 TGCATTGTCCAGATAATGC 58 NA Drosophila melanogaster 50 phr FBgn0003082 FBtr0088839,FBtr0088838 2 2 2 60 2R 3713283 3713301 AGTTTCTTACCCACTTGGA 58 3713325 3713343 GAGAACTCCTGTATGTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tor FBgn0003733 FBtr0112837 2 1 3 83 2R 3592967 3592985 GAAAGGCTGAAACAACTGC 59 3590738 3592923 TGATATTCGTAGCCCAATACTG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0089016,FBtr0111061,FBtr0089017,FBtr0089019,FBtr0111074,FBtr0089018 3 6 60 124 2R 3219876 3231794 ACAAGTTAATGTACCTCCCAG 59 3219772 3219792 CTTTCTTCCATGTAACTTGGG 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111103 2 1 60 98 2R 3236476 3242205 GGTACCATTCTTCAGATGGT 59 3236397 3236415 ATGAGAGTACCAGAGACCT 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111079 1 1 60 92 2R 3245777 3245795 AACAATGGAGGTGTCTGTG 59 3236463 3245723 TCGATGAACTTGTACCATCTG 59 NA Drosophila melanogaster 50 Ady43A FBgn0026602 FBtr0089050 1 1 1 254 2R 3132515 3132533 ATGGAGAAACTCAACCAGC 59 3131807 3131825 GTCCTGATACATGAGGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 Tsp42Ea FBgn0029508 FBtr0086172,FBtr0086171,FBtr0086173 2 3 3 109 2R 2884499 2884517 CAGAAGGACAAGTACCTGG 59 2884589 2884674 CAGCATTTCATGCTGATCTG 59 NA Drosophila melanogaster 50 Adf1 FBgn0000054 FBtr0086111,FBtr0086113,FBtr0086112 2 3 3 144 2R 2554510 2554588 ATCCGCATGAAATTACTGTC 58 2554695 2554713 ATCTTGATGGTGTTGAGCA 59 NA Drosophila melanogaster 50 Pld FBgn0033075 FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997 3 6 6 81 2R 2141752 2142360 ACATTCAGGGTTACTTGGT 58 2142405 2142423 CCCTCCTTACTAGTTCCAG 58 NA Drosophila melanogaster 50 CG14591 FBgn0033054 FBtr0086026,FBtr0086025 2 2 2 66 2R 1925324 1925344 CCGATTTACATTATCCGAAGC 59 1925222 1925240 TATGTGACCAGTGGAACTC 58 NA DesignNoJunction Drosophila melanogaster 50 gp210 FBgn0033039 FBtr0086044 1 1 1 80 2R 1659487 1659583 CATTTGGTGACTCCTTTAACG 59 1659625 1659643 TATACGACTCCGACAAAGC 59 NA Drosophila melanogaster 50 CG30440 FBgn0050440 FBtr0086076 1 1 1 90 2R 1372145 1373383 TCTTAAAGGGCTACTATGATCG 59 1372076 1372094 TTAAGGTTTCCGAACAGCA 59 NA Drosophila melanogaster 50 CG3107 FBgn0033005 FBtr0086078,FBtr0086077 1 2 3 113 2R 979878 979896 ATGAATGCAATGACTGGTC 58 979973 980041 CAGGTTTGGTCTGAATACG 58 NA Drosophila melanogaster 50 snRNA:U4:38AB FBgn0003931 FBtr0081292 1 1 1 82 2L 19810764 19810782 TGAAGTTCTACTGAGGTGC 58 19810828 19810846 TAGTGGACGGTATTTCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33804 FBgn0053804 FBtr0091808 1 1 1 69 2L 21427249 21427267 AATTTAAAGGAACGTGGCG 59 21427299 21427318 CGCATTTATAAGTGGCAGTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Acon FBgn0010100 FBtr0081473,FBtr0112855 3 2 2 118 2L 21172389 21172468 TTACGATAAGATCCAGCCC 58 21172550 21172568 TAAGCTTGATCCTCTCGAC 58 NA Drosophila melanogaster 50 CG10947 FBgn0032857 FBtr0081368,FBtr0081369,FBtr0081370 1 3 3 60 2L 20387006 20387025 GGAGAACTGGTACAAATACC 57 20386965 20386983 GATGTTCACCGAGTACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CdGAPr FBgn0032821 FBtr0081318 2 1 1 80 2L 19778937 19779026 GGACAGAACATCAACAACC 58 19778875 19778894 GTTAAGGTCCAAGGATAGCT 58 NA Drosophila melanogaster 50 fbp FBgn0032820 FBtr0081321,FBtr0081322 1 2 2 80 2L 19762535 19762556 TCCTATACCACATGTCTAATGG 58 19762294 19762496 GATGTATTTGCCCTGTTTCTC 59 NA Drosophila melanogaster 50 spi FBgn0005672 FBtr0081271,FBtr0081269,FBtr0081268,FBtr0100597 2 4 7 209 2L 19571730 19571749 ATACAGAAACGAGAAGAGCC 59 19569195 19569213 CGTAAACGTTGAGTTAGGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG10188 FBgn0032796 FBtr0081283,FBtr0081282 1 2 2 60 2L 19505689 19505708 ATTATGACCGAGAAACACCA 59 19505648 19505666 TCTCAACGAACACCTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 swm FBgn0002044 FBtr0081244,FBtr0081245 1 2 2 183 2L 19496695 19496714 TGCGAATAACAAGTCTACCC 59 19496860 19496969 GCCGAAGTTCTTAAAGTGC 59 NA Drosophila melanogaster 50 Hs2st FBgn0024230 FBtr0081288 3 1 1 109 2L 19443926 19443945 GAATTTAGTCCGCAAGAAGG 58 19443776 19443794 AGAAGAAGGGTATCTGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG10492 FBgn0032748 FBtr0113043,FBtr0081148 1 2 2 166 2L 19055919 19055937 TATTAACGTTCCACTGCAG 57 19056067 19056264 CTTCGTTGACACTATCGTG 58 NA Drosophila melanogaster 50 CG10283 FBgn0032681 FBtr0081085,FBtr0081086 3 2 2 96 2L 18476906 18476989 TCAGTCCCAAGAGATTAATGAC 59 18476831 18476849 CTTGATTTGTTCGTGCAGG 59 NA Drosophila melanogaster 50 CG15152 FBgn0032665 FBtr0081034 2 1 1 63 2L 18114686 18114704 GACACGGATGAGACTAAGG 59 18114730 18114749 TAAAGTCAACCTCATCGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CadN FBgn0015609 FBtr0081014,FBtr0100313,FBtr0081020,FBtr0100314,FBtr0081019,FBtr0081013 2 6 12 93 2L 17664218 17665391 TACCATTATGCAGGTTACGG 59 17664144 17664162 ATTATCCGGATCAATGCCC 59 NA Drosophila melanogaster 50 beat-IIIc FBgn0032629 FBtr0080971,FBtr0080972 1 2 2 89 2L 17191092 17193535 GATTGTTGCGTATCTTCCG 58 17191021 17191042 CAATTAACCCGAACATAGTCTC 58 NA Drosophila melanogaster 50 CG31784 FBgn0051784 FBtr0080974,FBtr0080973 3 2 2 82 2L 17102630 17105794 TCTATGACAATTCGTGTTCC 57 17102567 17102585 CAATTCGGGACGTATTCTC 57 NA Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080898,FBtr0080895,FBtr0080903,FBtr0080902,FBtr0080901,FBtr0080896,FBtr0080899,FBtr0080900 3 8 13 166 2L 16770916 16770935 ATTCATCCGTATCCACTTCG 59 16771130 16771351 GACAAATGTCTTTAACACCGG 59 NA Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080898,FBtr0080895,FBtr0080903,FBtr0080902,FBtr0080896,FBtr0080904,FBtr0080899,FBtr0080900 1 8 13 87 2L 16779200 16780559 GTAACACAAAGGTGTTCTTCC 59 16780608 16780626 ATCCAGGACATGATCTTGC 59 NA Drosophila melanogaster 50 jhamt FBgn0028841 FBtr0080859 1 1 1 60 2L 16366145 16366163 ATGCCAGTAAGCATTACCA 58 16366187 16366205 CATCCAATGTCCAGAACCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vig FBgn0024183 FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720 1 4 4 81 2L 15065447 15066946 GATAGAACTGGTGTGAAGTC 57 15065385 15065403 CATCAATAGCCTCCTTGAC 57 NA Drosophila melanogaster 50 mol FBgn0086711 FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015 3 5 5 163 2L 14977342 14977361 ATATGAAGGCTTTGACAGGT 59 14977067 14977217 AATAAAGCAGAGAATGCCTG 58 NA Drosophila melanogaster 50 Ance FBgn0012037 FBtr0080553,FBtr0080552 2 2 2 86 2L 13908582 13908660 GTATCTGAGATACTTGGTCTCC 59 13908707 13908725 TTGTCGGGATCATATTGGC 59 NA Drosophila melanogaster 50 Sop2 FBgn0001961 FBtr0080569 3 1 2 62 2L 13829347 13829365 ATGGAACAAGGATCGAACC 59 13829234 13829255 CTGTATATGTGGATCTCATGGT 59 NA DesignNoJunction Drosophila melanogaster 50 sec71 FBgn0028538 FBtr0080537 1 1 2 129 2L 13798835 13798853 CACTGGGCTACTATTTGAG 57 13799015 13799033 TAGTAGTTGGAAACGTGGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17217 FBgn0032419 FBtr0080341 1 1 1 60 2L 12170813 12170832 GAGAATGTGCATAAGTTCCT 57 12170854 12170873 GATTCTTGTACGACCATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi21 FBgn0032359 FBtr0080214 3 1 1 63 2L 11285325 11285343 AATCAAGATAGTGGACGGT 57 11285280 11285298 CAATATGCTCTCCGTTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ca-beta FBgn0015608 FBtr0080217 2 1 4 92 2L 11165650 11165668 GACCCTCAAGACTGTATGG 59 11163929 11165594 CCATGGAATCTCGAGATGG 59 NA Drosophila melanogaster 50 CG33129 FBgn0053129 FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172 3 4 4 118 2L 10966083 10966101 GATCAAGACCACCTGTGAC 59 10965901 10966002 ATTGGTCAATGAACTTTGCC 59 NA DesignRelaxed Drosophila melanogaster 50 UbcD2 FBgn0015320 FBtr0080115 3 1 2 95 2L 10766423 10766442 ATATCAAAGGTCTTGCTGTC 57 10766232 10766251 ATTCTGCAAATATTGCGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31716 FBgn0051716 FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080009,FBtr0080012 2 5 6 90 2L 10398212 10398292 GATATCAGATTTGCCGATTCTG 59 10398343 10398361 GGATTCTCGGGATACTCCT 59 NA Drosophila melanogaster 50 CG4968 FBgn0032214 FBtr0079987 3 1 1 99 2L 10307482 10307564 TTTCACGAAACGTTCATGG 58 10307626 10307645 GCTCATTGAAGATCTTGTGC 59 NA Drosophila melanogaster 50 NPC1 FBgn0024320 FBtr0079957 2 1 1 99 2L 10216933 10216951 GGTTAAACTTTGGGCTTCG 59 10216792 10216872 GATGATTATCTGTTCCAGCCT 59 NA Drosophila melanogaster 50 Dref FBgn0015664 FBtr0079889 2 1 1 89 2L 9965436 9965454 GTCCATATCTTGGTCCGAG 59 9965305 9965383 TCCAAAGCAATCACCAGAG 59 NA Drosophila melanogaster 50 Trx-2 FBgn0040070 FBtr0079839,FBtr0079840 3 2 2 101 2L 9615375 9615393 GACCCTGCAAGATGATCTC 59 9615541 9615559 CAATGTCTTCGCATTCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 gcm2 FBgn0019809 FBtr0079838,FBtr0079837 2 2 2 83 2L 9611428 9611447 TTAGCAAGGTTCTTAAGCGT 59 9611493 9611570 TGCCACAGGCATTATACTG 59 NA Drosophila melanogaster 50 jp FBgn0032129 FBtr0113030,FBtr0079861,FBtr0079860 3 3 3 95 2L 9549654 9550211 AGGTTAAGGACTGGTTTGTG 59 9549578 9549596 GCTAGGTGAGCATGTAGAC 59 NA Drosophila melanogaster 50 Eaat1 FBgn0026439 FBtr0079802,FBtr0079801,FBtr0079800 3 3 3 147 2L 9338300 9338321 AGATCATGTACATATCCTTCCC 58 9338514 9338599 TAAGTAATGGCTCTGGTAGC 58 NA Drosophila melanogaster 50 CG9314 FBgn0032061 FBtr0079731 3 1 1 66 2L 8706513 8706534 CAGTTGGTCAATGTACATTCAG 59 8706624 8706642 GAACGGATTGAAACGACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hnf4 FBgn0004914 FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846 3 4 4 101 2L 8688854 8688935 TCTTCTTCGATCCCAATGC 59 8688771 8688790 GCCGATCTGATATGTAGTCC 59 NA Drosophila melanogaster 50 Glt FBgn0001114 FBtr0079727,FBtr0079726,FBtr0079725 3 3 3 281 2L 8674101 8674119 ACCATCCATTAACCCATCC 59 8674363 8674775 TGATCATAGATTCGCGACAC 59 NA DesignRelaxed Drosophila melanogaster 50 Sema-1a FBgn0011259 FBtr0079691 3 1 3 181 2L 8665511 8666046 TGGCATTGTAACTCAACAC 58 8666191 8666209 AATCACGGTAGATGTAGCT 57 NA Drosophila melanogaster 50 Sema-1a FBgn0011259 FBtr0110930,FBtr0079691,FBtr0110931 3 3 3 60 2L 8564280 8631030 ACTCTACGTTGAATTAGGTCC 59 8631052 8631070 CACAACACTTTCGTTTCCC 59 NA DesignRelaxed Drosophila melanogaster 50 Trf FBgn0010287 FBtr0079542 2 1 1 61 2L 8073609 8073627 ATCTTCGTCAACGGAAAGG 59 8073652 8073670 CAGTCCATAATGTCCTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Slob FBgn0024290 FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518 1 4 4 80 2L 7649009 7649028 TTGAGGACTTAGTCCTTTGC 59 7648880 7648969 GCTTAATTGTACTGAAACAGGG 59 NA Drosophila melanogaster 50 Pvf3 FBgn0085407 FBtr0112611 3 1 3 125 2L 7155537 7155555 CAGAAAGAACTACTGGCGA 59 7107534 7118888 GTAAATGTTCTCCACATCATGG 59 NA Drosophila melanogaster 50 CG11266 FBgn0031883 FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638 2 7 7 117 2L 7036714 7036822 TTTATCACGTACCACAATGC 58 7036902 7036920 TATTCATGTCCAGTCGCTC 59 NA Drosophila melanogaster 50 slam FBgn0043854 FBtr0079254 3 1 1 140 2L 6375225 6375245 TAAGTCAAGTTACCTCCAGTG 59 6375413 6375431 ATTCACCTGTCTGCAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Fcp26Aa FBgn0086265 FBtr0079238 3 1 1 61 2L 5963887 5963905 GAACTATTTCCCACAGCCA 59 5963844 5963863 TAGTTGTTCTGACCACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14014 FBgn0031718 FBtr0114511 2 1 1 60 2L 5550525 5550544 CCAGTTGTATCTGATGAACG 58 5550484 5550502 CATTGCACTTGTAGTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nompC FBgn0016920 FBtr0079074,FBtr0079075 3 2 3 112 2L 5358663 5358681 ATGACACCACTACACTTGG 59 5358757 5358836 GGATTATAGCCGTTCTCGA 58 NA Drosophila melanogaster 50 Rtnl1 FBgn0053113 FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039 3 7 7 144 2L 4994705 4994794 CCCTTTAAGGATTACCTGGA 58 4994580 4994601 TGATCGAATCGATGATATCCTC 59 NA Drosophila melanogaster 50 Sgs1 FBgn0003372 FBtr0077393 2 1 1 60 2L 4937566 4937584 AAAGCTAATTACGACTGGG 57 4937608 4937626 ATCCGGGTATTATCTCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3714 FBgn0031589 FBtr0077481 1 1 6 89 2L 4190817 4193320 GATGTTAAGAGGAGTGGCT 58 4190746 4190764 GTCGATTCGAATTCCAAGC 59 NA Drosophila melanogaster 50 CG31961 FBgn0051961 FBtr0077484,FBtr0077485 2 2 2 60 2L 4187329 4187351 GACTACTTCTACCAGACTTTCAG 59 4187291 4187309 CATCCTTTAATCGCTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slp1 FBgn0003430 FBtr0077499 2 1 1 80 2L 3825840 3825858 CAAGAAACCCATCAACACC 58 3825901 3825920 GAGTACGGATGAACGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3407 FBgn0031573 FBtr0077515 2 1 1 93 2L 3811501 3811584 TCACGAAAGGACACATTCC 59 3811426 3811445 GATGATGTGGTACTTCAGGT 59 NA Drosophila melanogaster 50 CG3921 FBgn0031571 FBtr0077496 2 1 1 80 2L 3800323 3800342 TCGTCACAATTATTGGAGCT 59 3800383 3800466 AGTAGCATAGGATCATCTGAC 58 NA Drosophila melanogaster 50 CG31958 FBgn0051958 FBtr0077495 2 1 1 67 2L 3786137 3786155 GAGATGATACGCGAGTACG 59 3786186 3786204 ATCATGTTGTTGGACTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bowl FBgn0004893 FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493 2 4 4 81 2L 3780517 3780537 GCCCTATTCCTGTGATATCTG 59 3780577 3781922 CTCCTTGGAGTGAATATACCTG 59 NA Drosophila melanogaster 50 CG10031 FBgn0031563 FBtr0077544 2 1 1 73 2L 3698651 3698669 TTCAAGTACGGAGGATGTC 58 3698596 3698614 GGAATACAAGCCTCCTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 for FBgn0000721 FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305 3 10 10 112 2L 3623190 3623275 CGAGTTACTTACTGGTACCC 59 3623097 3623115 CATTGCGGGTGATATTCCT 59 NA Drosophila melanogaster 50 msl-2 FBgn0005616 FBtr0077571,FBtr0077570 1 2 2 60 2L 3465411 3465430 TAAGAAGCATCTGTTTCCCA 58 3465370 3465388 GTAGGTCTTGAAGTCGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34394 FBgn0085423 FBtr0112641 3 1 4 129 2L 3363097 3363117 CTTCATTGAGAAGAACACGTG 59 3362708 3363006 CTGATTCATGCCTCTCCTC 59 NA Drosophila melanogaster 50 CG31689 FBgn0031449 FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706 1 4 4 81 2L 2738712 2738730 GAGACCTTCAACAACTGGT 59 2738773 2738878 AGAAGATGATATGGACTGGTG 58 NA Drosophila melanogaster 50 CG31679 FBgn0051679 FBtr0077809 3 1 1 60 2L 2237682 2237702 GGATTATCAAAGGGTATCGTC 57 2237642 2237661 ATTGTAGCGAAGATTCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11723 FBgn0031391 FBtr0077852 3 1 1 60 2L 2145953 2145972 AACTTCGTTTGACTATGTCG 58 2145912 2145933 CTCATTCTCTATCTTGACATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Iris FBgn0031305 FBtr0077986 2 1 1 60 2L 1133498 1133516 GAATGCCATAACTGAAGCC 58 1133456 1133474 AAGGACAAGAGGACTAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ia2 FBgn0031294 FBtr0089789,FBtr0089790 2 2 2 80 2L 1014710 1014791 TATCACATCTATGAGGTTCACC 59 1014651 1014671 GTTCTTCAGGTAGAAAGAACG 58 NA Drosophila melanogaster 50 dock FBgn0010583 FBtr0078013,FBtr0078015,FBtr0078014 3 3 3 102 2L 831534 831552 TATTATGGAGCCATCACCC 58 831618 831723 AGTCTCCCATGTTAGTCTC 57 NA Drosophila melanogaster 50 CG3164 FBgn0025683 FBtr0078153,FBtr0078155,FBtr0100379,FBtr0078154 1 4 4 80 2L 123790 123872 TATTACGATCCTATCATTCCCG 59 123731 123750 TAGGACTTTAGCGAGTACCA 59 NA Drosophila melanogaster 50 galectin FBgn0031213 FBtr0078101 3 1 1 108 2L 74976 74994 TAAGTTTCACGGTGACTGG 59 75125 75143 AACCGTGGATTAATGTGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CR32661 FBgn0030356 FBtr0073593 1 1 1 289 X 11812517 11812634 GCGACGGAAATCTATTTGTG 59 11812183 11812201 GTTGACCCTTACCAAGGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32820 FBgn0052820 FBtr0070053 1 1 2 252 X 21484496 21484637 GAACATGAATCGCAACCTC 59 21484262 21484280 GATGTGCAGTGGTATCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12231 FBgn0031026 FBtr0074779 1 1 1 61 X 19425589 19425607 GGAGATCAGTACCGAAGAC 58 19425546 19425564 ACAGGTCGTAGATGTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9903 FBgn0030756 FBtr0074297 1 1 1 60 X 16433702 16433792 CTGGCAGATTCTTGTAGCT 59 16433660 16433681 CAGATAAGTGGATAGATAGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4239 FBgn0030745 FBtr0074270,FBtr0074269,FBtr0074268 3 3 3 93 X 16281322 16281397 GGTACGTCGTCTTCTACAC 59 16281454 16281472 TAGATCTCCTTCATGGCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG8928 FBgn0030711 FBtr0074132 3 1 1 82 X 15839282 15839301 AATTGGATAGCTACCTTGTG 57 15839345 15839432 ATGATTTGAGGCATCTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9065 FBgn0030610 FBtr0073966 3 1 1 71 X 14978594 14978675 GAAATATCCGTCTCGAACC 57 14978541 14978559 AACTCCTTGAGATGCACTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG34408 FBgn0085437 FBtr0114584,FBtr0114585,FBtr0071439,FBtr0112675 2 4 4 81 X 10121919 10121937 AGAACTCCACCATATTGGC 59 10121982 10122065 CGTATGAGCAGAGTCACTG 59 NA Drosophila melanogaster 50 CG1468 FBgn0030157 FBtr0071388 2 1 1 73 X 9772671 9772692 CGATGATGACGAATTAAACTGG 59 9772726 9772867 TCACTACATCTCCACACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9034 FBgn0040931 FBtr0071343 2 1 1 154 X 9053866 9053942 TTGTGTACCAAGATGTCCG 59 9053730 9053748 TCCTTGGCATAGTAGTTGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11284 FBgn0030056 FBtr0071222 1 1 1 181 X 8581603 8581624 CTACAATTCGAAGTACAAGGAC 58 8581766 8581859 ATAGGCAATCGGAATCCAG 59 NA Drosophila melanogaster 50 sws FBgn0003656 FBtr0071126,FBtr0071125 1 2 2 104 X 7852380 7852399 AAGAAATGGAATCCCTTCAC 57 7852235 7852313 TTTGACCTCCTCTAGTTGG 58 NA Drosophila melanogaster 50 Cec-Psi1 FBgn0000280 FBtr0085613 3 1 1 62 3R 26037273 26037291 CATCCTGACCACTTATTGG 57 26037317 26037396 AGACCAACGTCTAATGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1746 FBgn0039830 FBtr0085773,FBtr0085774,FBtr0085772 3 3 3 209 3R 27043629 27043647 AGTACTTGCGACCATTGAG 59 27042876 27042895 CGAATACTGTTCCGATACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG5706 FBgn0039175 FBtr0084637 2 1 1 137 3R 20078129 20078221 TACACCGATGATGAGTTCC 58 20077947 20077966 GTATATGATCTCCTCGCTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13604 FBgn0039137 FBtr0084509 2 1 4 103 3R 19817569 19817588 ATACCTATGAGCAGTTGGAC 58 19816967 19817503 GAGTGAGATGGATCGACTG 59 NA Drosophila melanogaster 50 CG10375 FBgn0039116 FBtr0084458 1 1 1 114 3R 19594040 19594185 ACGGATCAAATGATTGCAG 58 19594263 19594281 TGACCATAACGTAGATGGC 59 NA Drosophila melanogaster 50 CG13838 FBgn0039041 FBtr0084344 3 1 1 86 3R 18868181 18868199 AATTCCAGCTTGGATGACC 59 18868249 18868267 GATTAGCCTCCGAATCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rtet FBgn0028468 FBtr0084009 2 1 1 80 3R 16935847 16935867 GTCACATTTCTGATGTACCAC 58 16935909 16935984 CATGATTACACCCGTTGTC 58 NA Drosophila melanogaster 50 sec15 FBgn0038856 FBtr0084034 1 1 1 60 3R 16932398 16932416 GTTACACCGTGAACATCCT 59 16932292 16932376 ACCTCATTATAATGATCCCGC 59 NA DesignNoJunction Drosophila melanogaster 50 TotC FBgn0044812 FBtr0083972 3 1 1 65 3R 16698768 16698849 TTCTCTACTATGCCTTGCC 58 16698878 16698896 CTTTCCTCGTCAGAATAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34008 FBgn0054008 FBtr0100063 2 1 1 85 3R 16406880 16406899 AATCACATTGATACCAGCAG 57 16406746 16406764 TTAAATATCGTGCATGGCC 58 NA DesignNoJunction Drosophila melanogaster 50 mRpL55 FBgn0038678 FBtr0083754 3 1 1 77 3R 14920421 14920440 TATATCCCACAGTTGTGGTG 59 14920307 14920381 GCTTGATAATCTTCCTGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gyc88E FBgn0038295 FBtr0083028,FBtr0083027,FBtr0110961 3 3 3 116 3R 11013199 11013217 TTCAGCAGAGATCTCATGC 59 11013295 11013377 CTCATCCAACAATCTCATGGA 59 NA Drosophila melanogaster 50 Aats-met FBgn0027083 FBtr0082895 1 1 1 237 3R 10078533 10084353 AACTACAGCCACGTAAAGG 59 10077695 10077713 AGTGGAAGTGATTGCACTC 59 NA DesignNoJunction Drosophila melanogaster 50 svp FBgn0003651 FBtr0082564,FBtr0082563 2 2 3 295 3R 8107954 8115931 GACAATTTACCTGCGAAGG 58 8119839 8119857 GTAGGAACTGAGGTACGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG34360 FBgn0085389 FBtr0114581,FBtr0112576,FBtr0114582 2 3 5 235 3R 5701940 5756098 AATGAGGAACCCATTGAGC 59 5769232 5769250 AGATAGTTGCCGTAGTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 alpha-Est5 FBgn0015573 FBtr0081547 1 1 1 106 3R 3361247 3361464 GATTGTTTGGGATTCCTATCG 58 3361161 3361179 GAGATGTACTGCTTGACCC 59 NA Drosophila melanogaster 50 Alh FBgn0037471 FBtr0081613,FBtr0113199,FBtr0081612,FBtr0081614,FBtr0081615 3 5 6 164 3R 2926915 2926936 GAAGATCAGCTATGAGAAACAG 58 2925158 2925176 TTACTCAGTACGACCAAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14673 FBgn0037352 FBtr0078738 2 1 1 81 3R 1452574 1453045 AATTGAGCTACACCTGTGG 59 1452511 1452530 GACTCATCGGAATCATCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14659 FBgn0037284 FBtr0078873 2 1 1 60 3R 656747 656766 ATTCCACCCAACTATACCAG 58 656706 656726 GCTGTTGCTTAGTCTTTATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113339,FBtr0078898,FBtr0078902,FBtr0113341,FBtr0078899,FBtr0078901,FBtr0113340,FBtr0078897,FBtr0078900,FBtr0113338 3 10 15 218 3R 110087 110105 TAGCTAAGCAGATGGTTGG 59 120999 121299 TGATGTTGTACTTATCGCGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG13040 FBgn0036608 FBtr0075431 3 1 1 226 3L 16318778 16318861 GCTTCATTGCTATCTGTGC 59 16318570 16318588 AGCCACAGTCTTAATCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34452 FBgn0085481 FBtr0112758 3 1 1 80 3L 15680220 15680239 TGCTAAAGACGTATAGTCCC 58 15680042 15680178 CTAGCATAAAGACCAGACCA 58 NA Drosophila melanogaster 50 CG32135 FBgn0052135 FBtr0075760 1 1 1 60 3L 13961103 13961124 GGAGATATCATCGGATACTCTG 59 13961145 13961163 AGTCTGCAATACGAATGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snRNP69D FBgn0016940 FBtr0075952 2 1 1 99 3L 12727057 12727075 TGAAGCTAAGTCACGAGAC 59 12726976 12726994 TTCAGGTGAGTGTTCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pbgs FBgn0036271 FBtr0076011 3 1 1 60 3L 12263572 12263590 TTCCTATCCGTATCACACG 58 12263530 12263548 ATACAGCATAGCGAACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7512 FBgn0036168 FBtr0113163 1 1 1 83 3L 11511464 11511553 CTAAGCAGGATAGATCCCAC 59 11511599 11511617 CACATAATCACACTTGCGG 59 NA Drosophila melanogaster 50 fry FBgn0016081 FBtr0076417,FBtr0110843 2 2 2 80 3L 9625379 9625399 CAGAAGTGGGATGAAATTTCC 59 9625257 9625339 TACTATAAAGGCTTCTGTGCG 59 NA Drosophila melanogaster 50 CG4484 FBgn0035968 FBtr0076503 3 1 1 232 3L 9196872 9197216 AGTTAATGAAGTGGTTCGGA 58 9196599 9196619 CTGTTTCAGTGGTACTATCTC 57 NA DesignNoJunction Drosophila melanogaster 50 Tequila FBgn0023479 FBtr0076526,FBtr0076525,FBtr0076528 1 3 4 100 3L 9082961 9082979 AAAGATGAGGCTAACTGCC 59 9083042 9083131 CATTGACCATTAGCCTTGAC 58 NA Drosophila melanogaster 50 CG32372 FBgn0052372 FBtr0076793 1 1 1 80 3L 7518524 7518542 GATGGCATGATTCGATTGG 59 7518584 7518665 CAACAAAGTCATTTCCAAGGG 59 NA Drosophila melanogaster 50 CG10486 FBgn0035647 FBtr0114644 2 1 1 71 3L 5898734 5898833 TTTGGTGCTCGAGTATGTG 59 5898681 5898699 GAGTAGAACAAGGCCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12493 FBgn0035571 FBtr0073363 3 1 1 61 3L 4753579 4753597 TGAAGGACCTATTGATCGT 57 4753363 4753555 CAAGTCATCTGACATACCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycJ FBgn0010317 FBtr0073128,FBtr0073127 3 2 2 84 3L 3466872 3466968 GCCGTCTACTATATGGATCG 59 3467014 3467033 TATGAAGACAAGTGATGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 5SrRNA:CR33380 FBgn0053380 FBtr0086372 1 1 1 62 2R 15643741 15643759 AATACATCGGTTCTCGTCC 59 15643697 15643715 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5339 FBgn0034925 FBtr0072220 2 1 1 93 2R 19785296 19785314 TGTTCATACTGTCCGAGGA 59 19785164 19785239 ATATCCAGCAACGTGACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12782 FBgn0034838 FBtr0072048 1 1 1 108 2R 19152611 19152629 TAGAATCGAACCAGCTGAG 58 19152465 19152539 AACCTAATGGACTTGTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp58d FBgn0034770 FBtr0071872 2 1 1 143 2R 18594758 18594830 TTTCTATCGTGCTTTGTGG 58 18594936 18594955 CATGGCAATGTGATAATCCT 58 NA Drosophila melanogaster 50 mei-S332 FBgn0002715 FBtr0071761 2 1 1 152 2R 18010962 18011041 GATAGAAGAGCCAACAAGC 58 18011155 18011175 GCTAAACAGACGATTGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Ipk1 FBgn0050295 FBtr0113368,FBtr0071515 3 2 2 114 2R 16764803 16765127 CTAAGGGAATACGAGCACC 59 16765205 16765223 CAATAGAAACGCGACTCTG 58 NA Drosophila melanogaster 50 CG5323 FBgn0034362 FBtr0086706 2 1 1 221 2R 14502750 14502829 CAGAATGAGATGCACTTGTG 59 14503110 14503128 CTGATCCTCATTGGGACTG 59 NA DesignNoJunction Drosophila melanogaster 50 qkr54B FBgn0022987 FBtr0086925,FBtr0086923,FBtr0086924 2 3 3 92 2R 13358308 13358326 CCAATGAGTACATACGCGA 59 13358382 13358455 TTTCTATCTCGCCTTCCAG 58 NA Drosophila melanogaster 50 Ercc1 FBgn0028434 FBtr0087448 2 1 1 65 2R 10741043 10741119 TCTAATCCACACCAGAAGC 58 10741148 10741166 AGCATCAGTCTTGTTCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8067 FBgn0033891 FBtr0087595 2 1 1 60 2R 9871620 9871638 TAGTTAAGGACGAAGAGCA 57 9871718 9871737 CTAGAGATGACCAGATCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG16935 FBgn0033883 FBtr0087622 3 1 1 99 2R 9748784 9749140 ATTCAGGGTAAATACCCGG 58 9748703 9748721 CAAAGCCTTTGACTTTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sug FBgn0033782 FBtr0087789 2 1 1 170 2R 8816677 8816695 GGATACGGATATCGTCAGC 59 8816829 8817289 TCTATCGCAATCTGTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7222 FBgn0033551 FBtr0088223 3 1 1 80 2R 6701649 6701668 TCGGTAATGAAGAGCTACTG 58 6701708 6701797 TGATCCAGTACATATCGTAGAC 58 NA Drosophila melanogaster 50 CG12309 FBgn0033542 FBtr0088215 2 1 1 60 2R 6613425 6613443 GGTCAGACACTTATCCTCC 58 6613467 6613485 CAGCTCCACTGATAGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or46a FBgn0026388 FBtr0088331 3 1 2 94 2R 6029333 6029351 TTGTCCTTCTCATGATGCA 58 6029409 6029488 GATAGAACCAAAGGCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jra FBgn0001291 FBtr0088411,FBtr0088410 2 2 2 62 2R 5984793 5984813 GCTGCGAACTTAAGTATTCAG 59 5984837 5984855 AGGTATGATCTGAATGGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1902 FBgn0033434 FBtr0088531 3 1 2 173 2R 5491676 5491758 CTCGTTCAGGAATATTCGC 58 5491895 5491913 CTATGTTCCAGTTGTCGTC 57 NA Drosophila melanogaster 50 CG12769 FBgn0033252 FBtr0088828,FBtr0088827 2 2 2 120 2R 3942343 3942423 CCTCACTGATCAAGGTCTC 59 3942241 3942259 TTGTTGTTACTCTCCAGCG 59 NA Drosophila melanogaster 50 CG17510 FBgn0039969 FBtr0086073,FBtr0086074 2 2 2 84 2R 1491809 1491827 CAAGGAGTATACGTCTGGC 59 1491512 1491761 ATATTCCTCTAGGGAGCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG31619 FBgn0051619 FBtr0110959,FBtr0085901,FBtr0085902 1 3 3 110 2L 21713301 21716335 GATCCCACCTACATCAAGG 59 21716408 21716427 CGTTCGAGAGTATTCAAGGA 59 NA Drosophila melanogaster 50 Mio FBgn0032940 FBtr0081524,FBtr0081527,FBtr0081528,FBtr0081526,FBtr0081525 3 5 5 84 2L 21286543 21286561 AGTCTTGATGAGCTACGTC 58 21286414 21286496 TATTTGTAACAGCTGGACGA 59 NA Drosophila melanogaster 50 CG31626 FBgn0051626 FBtr0081485 3 1 2 125 2L 21233892 21236653 TATTAATTATCCGCCTCTGGG 59 21233787 21233806 ATTATTGCTGGATATCCGTC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9264 FBgn0032911 FBtr0081463,FBtr0081462 2 2 2 80 2L 21079050 21079070 TCTAATTACGGGATTGGTCAG 59 21079110 21079298 TCCTGAGATCTATAATGCACC 58 NA Drosophila melanogaster 50 phr6-4 FBgn0016054 FBtr0081404,FBtr0081405 1 2 2 60 2L 20644599 20644680 TAATAAGTTTCCGGGAGGC 59 20644557 20644575 ATCCTTTAGGGATTCCTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG10188 FBgn0032796 FBtr0081283,FBtr0081282 1 2 2 131 2L 19506345 19507491 AGGTATTTCGACCCATTCG 59 19506232 19506250 ATTGAGCTCGTCGATATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6453 FBgn0032643 FBtr0080998 1 1 1 154 2L 17483290 17483308 TAGATGCTTTCGTAACGCT 59 17483089 17483172 TTCTTCGCTTAGCTTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyt-c-d FBgn0086907 FBtr0080888 3 1 1 61 2L 16719329 16719347 GAATTTGGACGAGTACCTC 57 16719372 16719390 CGAACACCATCTTTGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 beat-Ib FBgn0028645 FBtr0080808 3 1 1 126 2L 15906996 15908081 GAAATCGATGTCGAGACTG 58 15906888 15906906 CGATGGAAGTATCGAAGGT 58 NA Drosophila melanogaster 50 CG12636 FBgn0028854 FBtr0089265 1 1 1 80 2L 14726510 14726728 GCGTACCAGATTAATGTGAC 58 14726449 14726468 AATAACGTGTATGTGGTCGA 59 NA Drosophila melanogaster 50 Sop2 FBgn0001961 FBtr0080570,FBtr0080569 2 2 2 175 2L 13829263 13829350 AACCCAGATTGCCTTATCG 59 13829106 13829124 ACACATAGGCATTACGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 JhI-21 FBgn0028425 FBtr0089655,FBtr0089656 3 2 2 112 2L 12054492 12055097 TTATTTACACCGAATCCGTG 57 12054399 12054417 AGATCTTGTGATGCATGTG 57 NA Drosophila melanogaster 50 CG14932 FBgn0032375 FBtr0080257 1 1 1 60 2L 11790397 11790416 CCCATATGTCACTTATGAGG 57 11790495 11790513 GGTAATCTCCAAAGCACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CHIP FBgn0027052 FBtr0080027 1 1 1 100 2L 10438801 10438888 GAACGTCGAAAGAAACGTG 59 10438949 10438970 TCATACGTAATTCCAGATGGAG 59 NA Drosophila melanogaster 50 CG9287 FBgn0032057 FBtr0079753 1 1 1 169 2L 8677654 8677673 CCCACGATTTCTTTAATCGT 58 8677358 8677377 ATAATCGAACGAGTAGAGGA 57 NA DesignNoJunction Drosophila melanogaster 50 Ugt37b1 FBgn0026755 FBtr0079242 2 1 1 94 2L 6225744 6225817 GAATGCCAGGATCTACAGG 59 6225875 6225893 AGGCAAAGAAGATTAGCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15625 FBgn0031644 FBtr0077390 1 1 1 97 2L 4890351 4890433 GATATCCACAGTACATGAACAC 58 4890491 4890509 CTTGATGTTCATCGCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3251 FBgn0031622 FBtr0077422 2 1 1 63 2L 4690496 4690569 CTGAAGTTAGAAAGGCAAGAG 58 4690453 4690471 TTCCGAAAGAGTTGACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Psf2 FBgn0031599 FBtr0077461 1 1 1 85 2L 4386822 4386840 AAGTGCCGAATTGTACCTC 59 4386697 4386773 GTAAAGAACTTTGAGCGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17265 FBgn0031488 FBtr0077646 1 1 1 60 2L 3014569 3014653 CCAGAACAAACTACGTCAG 58 3014674 3014695 CTCTAGATTATCGGTGATTAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3119 FBgn0031466 FBtr0077691 1 1 2 121 2L 2837280 2837357 AGATGACGATACGTACGTG 58 2835536 2837195 CGCCAGACATATAACTCAC 57 NA DesignRelaxed Drosophila melanogaster 50 BBS8 FBgn0031255 FBtr0078058 1 1 1 116 2L 424911 424929 CAAATCGACTTGGTTCTGC 59 425009 425087 GAAGTCACCAGAAGTCACC 59 NA Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089657,FBtr0089661 2 2 7 102 X 17836890 17836908 AACTACTTCTATCACCGCG 59 17835182 17836826 TGTGTTGACCTAATGTACCTG 59 NA Drosophila melanogaster 50 CG32694 FBgn0052694 FBtr0071412,FBtr0071411 1 2 4 108 X 9898694 9898712 CAATGATCTCCAGCTCTCC 59 9898782 9899196 GAACAGATTACTCTTGTTGCG 59 NA Drosophila melanogaster 50 l(1)G0255 FBgn0028336 FBtr0070954,FBtr0070953 2 2 2 85 X 6575394 6575476 TTCGGCTATTGTCTGATGG 59 6575524 6575543 GATCTTGGCAATATTCTCGC 59 NA Drosophila melanogaster 50 yin FBgn0015565 FBtr0070632,FBtr0070633,FBtr0070631 1 3 3 174 X 3759040 3759114 GATGCCAACTAAAGCTGTG 59 3758884 3758903 CAAAGATCCTGCGTTAATGG 59 NA Drosophila melanogaster 50 CR41604 FBgn0085814 FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269 1 4 4 104 U 3449415 3449487 TTTCTGAAGCAAAGTCCCA 59 3449555 3449573 CTTGATACTGATCTCCCGC 59 NA Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451 1 4 8 94 4 162671 162692 GCCGCTTAGTTCATTAATATCC 59 162747 162837 GATGAACCCAACAAGTCAC 58 NA Drosophila melanogaster 50 ocn FBgn0041102 FBtr0085599 3 1 1 200 3R 25863172 25863190 ACCATTGTAAGAGGATCCG 58 25862881 25862899 CAGTATGTCCTTCGTCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 spz FBgn0003495 FBtr0085146,FBtr0085143,FBtr0112834,FBtr0085139 3 4 12 139 3R 22892376 22892851 TCTTTAATAGGACGGACACG 59 22892129 22892147 GTCATTCCTCAAAGGACGA 59 NA Drosophila melanogaster 50 mRpL45 FBgn0038996 FBtr0084272 1 1 1 60 3R 18444543 18444561 TTCGTAAGCTCAAGTTCGT 59 18444585 18444603 ATATCCTCCTGTTTCTCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6455 FBgn0019960 FBtr0084188 2 1 2 152 3R 17847984 17848135 ATCACCTACGCCAAATACG 59 17847850 17847870 AGACTTGACCTTATCGATCTG 59 NA Drosophila melanogaster 50 ire-1 FBgn0038736 FBtr0113248 1 1 2 127 3R 15683399 15686380 CAATAGCAGATGATCCTCCT 58 15683291 15683310 CGGTAACTTCTTAAGACTGC 58 NA Drosophila melanogaster 50 CG17836 FBgn0038661 FBtr0083701,FBtr0113246,FBtr0083702,FBtr0083703,FBtr0083700 3 5 5 92 3R 14751507 14751633 AATGATGATCGGTTCGAGG 59 14751689 14751707 CTCTACGATGTCTGCATGG 59 NA Nonspecific Drosophila melanogaster 50 CG7208 FBgn0038575 FBtr0083618,FBtr0083617 1 2 2 281 3R 14010549 14010567 AAGAGCTCTATGCTTCTGC 59 14010222 14010240 AAATATGGAAGCCATGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 alt FBgn0038535 FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416 3 6 6 165 3R 13500933 13500951 GTAGCAACCACAATAGCAC 58 13500723 13500804 AATGTGTTTGTCGTCTTGG 58 NA Drosophila melanogaster 50 srp FBgn0003507 FBtr0083216,FBtr0083215,FBtr0100595 1 3 3 88 3R 11827969 11827987 GGAAAGTGGTTCATTGGTG 58 11828036 11828140 GTGGTTTCATATCGTCATTGAC 59 NA Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957 2 1 12 100 3R 11126777 11126795 CAACACCCGTCTAAAGGAG 59 11128938 11132074 CGATTAGGTCGTCTTCGAG 59 NA Drosophila melanogaster 50 CG5196 FBgn0038039 FBtr0082585,FBtr0082584 2 2 2 114 3R 8236622 8236640 GTATTCAATGACGAGTGCC 58 8236772 8236790 CTCGTTTCTCCTCCTTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Sp7 FBgn0037515 FBtr0081740,FBtr0081742,FBtr0081743 2 3 4 92 3R 3586989 3587741 ACAAGGAAGTTGTAGGAATCC 59 3587795 3587813 TAAGACTGCTGAATCACGG 59 NA Drosophila melanogaster 50 djl FBgn0037463 FBtr0081631 2 1 1 72 3R 2886919 2886938 GAAGGAATCAAACCTTTCGT 58 2886973 2886991 CTTCTGGCATTCCTTTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34113 FBgn0083949 FBtr0110806,FBtr0110807 2 2 2 81 3R 1699263 1701808 GATCTATCAGATCTGATGCCT 58 1699202 1699220 TCTGATTGACGCTGTAGAC 59 NA Drosophila melanogaster 50 CG6933 FBgn0036952 FBtr0074855,FBtr0074854,FBtr0074853 2 3 3 61 3L 20211888 20211906 TGTACCCATAACCGATGTG 59 20211845 20211863 TTCTTGCAACCCTCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34258 FBgn0085287 FBtr0112452 3 1 1 178 3L 19944749 19944767 ATAGTTATCCGGACTGCCT 59 19944535 19944553 ATAGGTTTGCTTAGTTGCG 58 NA DesignNoJunction Drosophila melanogaster 50 Eip75B FBgn0000568 FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149 3 4 4 111 3L 17948399 17948417 GAGATGGATATCGTTGGCT 58 17948141 17948324 TGAGTATTCCGATCTGCTG 58 NA Drosophila melanogaster 50 CG34247 FBgn0085276 FBtr0112441 2 1 1 88 3L 16254433 16254452 GAATCGCATCTTTACCACAG 58 16254364 16254382 ATGTACTCATAGGTCAGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ATPsyn-b FBgn0019644 FBtr0076406,FBtr0076405 1 2 2 66 3L 9724145 9724163 GAGACTCTCAACAAGTGCA 59 9724193 9724211 TCGTTTAGGCAGACTTGAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4483 FBgn0035970 FBtr0076502 1 1 1 60 3L 9229684 9229702 GCATCAAACTAAAGGACGA 57 9229642 9229662 GTTAATAGAGTGATTGGACCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7387 FBgn0035852 FBtr0076723 2 1 1 60 3L 8184995 8185013 TCTAGCGACTATTTCCGAC 58 8184953 8184971 AGATGTTTAGGTGCTTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nmo FBgn0011817 FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758 1 6 6 141 3L 8040250 8040352 GTCTTCGATCCGGATAAGC 59 8040457 8040475 AATCAGCCGTATACTGACG 59 NA Drosophila melanogaster 50 CG32396 FBgn0052396 FBtr0076969 3 1 1 60 3L 6524162 6524180 GTGTTCTTTAACGCAACGG 59 6524203 6524222 CCGTGTCTATCAGTATGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Scsalpha FBgn0004888 FBtr0073151 3 1 1 75 3L 3817925 3817943 GTCATTGTGACCAGGAGTC 59 3817981 3818000 TTTACACTAACTCCAGACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gsb FBgn0001148 FBtr0072444 1 1 1 60 2R 20951918 20951939 ATCATCAGGTTGATCAGAAGAG 59 20951958 20951978 CCAAAGTATGGATAGGTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4806 FBgn0035048 FBtr0072332 1 1 1 60 2R 20554397 20554415 CCCAATATCTTCGGAACAC 57 20554298 20554317 CAGCACGATCCTCTATACTG 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)tid FBgn0002174 FBtr0089505,FBtr0089503,FBtr0089504 2 3 3 75 2R 19596287 19596305 AAACCAAAGCGAAAGAAGG 58 19596344 19596362 ATCTTGCTTATGAAGCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 apt FBgn0015903 FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067 3 5 5 85 2R 19484451 19484469 TTTATGAAGATTGCCGCCA 59 19484517 19484598 ATGTACTGTGTCATTTCCGT 59 NA Drosophila melanogaster 50 PIP5K59B FBgn0034789 FBtr0071901,FBtr0110862,FBtr0071900 2 3 3 100 2R 18763724 18763743 TATATTCTACCTGACGACCG 58 18763803 18763886 GATTCATATAGTAACCAGGCAG 58 NA Drosophila melanogaster 50 CG30461 FBgn0050461 FBtr0100249,FBtr0100251,FBtr0100250,FBtr0100252 1 4 4 60 2R 12883879 12883899 GCAGCTTATTCTCAGTAATCG 58 12883785 12883803 TTTCTTGATTCGCGAACAG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Ext2 FBgn0029175 FBtr0100512,FBtr0100513 2 2 2 60 2R 12034900 12034918 GAGTAGGATCTTTCCGCTG 59 12034858 12034879 GTTGGTATCAATGGTATTCCAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k05713 FBgn0022160 FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309 3 4 4 112 2R 11745506 11745703 TACCTTCAGATGATGTCGG 58 11745412 11745430 CTGATCTGCTTCAGATTGG 57 NA Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930 1 5 6 105 2R 8335509 8335527 ATCATAACCTCAACAAGCG 57 8335595 8335676 GAGTTATCACTTGTGTACGC 58 NA Drosophila melanogaster 50 Tom7 FBgn0033357 FBtr0088657 3 1 1 150 2R 4839313 4839331 GGAGTTAAGGATCGTTTGG 57 4839553 4839572 TTTACTGCCATAACAGACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyt-b5 FBgn0033189 FBtr0088906 3 1 2 135 2R 3422534 3422552 CTTCGCTCGAGTTCTTAGG 59 3422887 3422905 AACGTCCTCAAAGTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pld FBgn0033075 FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997 1 6 6 80 2R 2141751 2142360 GACATTCAGGGTTACTTGGT 59 2142403 2142421 CTCCTTACTAGTTCCAGGC 58 NA Drosophila melanogaster 50 CG7843 FBgn0033062 FBtr0086021,FBtr0086020,FBtr0086018 2 3 3 166 2R 1969443 1969461 CTCTAAGCGTCCAGAATCG 59 1968904 1969243 GTTCCAAAGGCAATTCTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG34211 FBgn0085240 FBtr0112404 3 1 1 91 2R 1934770 1934788 CTGTTCATCTTCTTGGTGC 58 1934843 1934861 GTGGTGGTCTTAAAGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2611 FBgn0032871 FBtr0081387 2 1 1 70 2L 20650645 20650663 AGCTACTATGTGTACGTGC 59 20650697 20650715 CTTCGTATCTCGTCCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst36Fb FBgn0086682 FBtr0081075 1 1 1 80 2L 18672388 18672406 GAATCCAGCGTATCCAGTC 59 18672273 18672347 TATCGGATCAGTCAAACTACTG 59 NA Drosophila melanogaster 50 CG31805 FBgn0051805 FBtr0080958 3 1 1 73 2L 16898441 16898459 TACTGATGACTCTCCCGAG 59 16898279 16898297 GTAAATGGGCGAGATTGGA 59 NA DesignNoJunction Drosophila melanogaster 50 Nckx30C FBgn0028704 FBtr0079926,FBtr0079928,FBtr0079927 1 3 3 118 2L 9733529 9742390 CAACGTGGTATCAATGACAC 59 9733430 9733448 ATGATGTGCAGGATGACAG 59 NA Drosophila melanogaster 50 CG33298 FBgn0032120 FBtr0089853,FBtr0089854 1 2 2 80 2L 9517894 9518001 AGCTCATAAGGTTAACAGCA 59 9518041 9518062 TGTCATTCTCCATATCAGTCAG 59 NA Drosophila melanogaster 50 Ndae1 FBgn0031899 FBtr0079410,FBtr0079411 1 2 2 90 2L 7229715 7229734 ATACGACTGTGTCTGTACAC 59 7229590 7229665 ATTGTAGGACTCACAAGAATCC 59 NA Drosophila melanogaster 50 ifc FBgn0001941 FBtr0079179 2 1 1 60 2L 5987898 5987916 ACACTTTATCTCGGAGCAC 59 5987940 5987958 ACCGTAGTAGGAGTACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 antdh FBgn0026268 FBtr0073468 1 1 1 82 X 11062398 11062495 AAGATTACGAGCGTCAGTC 59 11062334 11062352 AGCATTCGATCCTTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089210,FBtr0089215,FBtr0089211,FBtr0089213 2 7 7 83 4 1079778 1079797 ATAACCAGACAACGAATCCT 58 1079118 1079732 ATGTAGAAGAGCTCTTGCC 59 NA Drosophila melanogaster 50 CG18428 FBgn0039149 FBtr0084543 3 1 1 61 3R 19935254 19935272 CAATACAGCCTGAAAGGGT 59 19935297 19935382 CAGTGCTATTGGTATGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TotA FBgn0028396 FBtr0083971 3 1 1 61 3R 16696805 16696910 TCTTCAACTGCTCTTATGTG 57 16696934 16696952 GAATAGCCCATGCATAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17275 FBgn0038836 FBtr0083988 2 1 1 69 3R 16685382 16685400 AGAATCTAAGGAACGGTGG 58 16685273 16685350 AAATCCTTCTTCAATCGCAC 58 NA DesignNoJunction Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 2 7 12 159 3R 11122418 11125004 GAAATACGATGAGGTTGCC 58 11126526 11126544 CTTCTCCTCAGAGACTTCC 58 NA Drosophila melanogaster 50 CG14355 FBgn0038208 FBtr0082907 3 1 1 206 3R 9976870 9976889 TGCACAGGATATTATGTTCG 57 9976623 9976702 TTCTTAAGTTCACAACACGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13056 FBgn0040794 FBtr0075376 3 1 1 77 3L 16326437 16326526 GTCACAGAGAATGTACTTATCC 58 16326564 16326582 TGATACAATTGCAGATCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34039 FBgn0054039 FBtr0100094 3 1 1 80 3L 14555382 14555494 AATTAACGAACTGACAAGCG 59 14555537 14555555 ATCTTCAGTTCCAAGGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18537 FBgn0034323 FBtr0086759 2 1 1 62 2R 14183671 14183691 GGAAAGTTTGGAATATCAGCG 59 14183715 14183796 CACCATTGTCTCCTCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 LvpD FBgn0002569 FBtr0088747 3 1 1 158 2R 4342651 4342731 ATTCGCACAAACAAGATCAG 59 4342911 4342929 TCTCTGTGACAGATCTGCT 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)37Bb FBgn0002021 FBtr0081177 2 1 1 65 2L 19051030 19051110 AGAAGGATGACACGTATGC 59 19050983 19051001 AGAATTGCTGACAAAGACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ca-alpha1D FBgn0001991 FBtr0090003,FBtr0090006,FBtr0090004,FBtr0090005 2 4 4 80 2L 16174941 16174961 TATGCGATAATTGGCCTAGAG 59 16175003 16175448 TTCCTCGTATTCACCTGTG 58 NA Drosophila melanogaster 50 He FBgn0028430 FBtr0080616 3 1 1 106 2L 13972602 13972799 CCAATACATAGCAACCGTC 58 13972514 13972532 GAAGTGGATTCCGTTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:M2:83F FBgn0011919 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:N5:42Ae FBgn0011935 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:Y1:22Fb FBgn0012017 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 kl-5 FBgn0001315 FBtr0113891 3 1 1 88 YHet 30391 30409 CAAGTGATAGGATGTCAGC 57 30461 30531 TATTCCCTGAAGTTGAGGG 58 NA Drosophila melanogaster 50 roX2 FBgn0019660 FBtr0073515 2 1 2 60 X 11473568 11473586 ACGTTACTTCCGAGATCCT 59 11473610 11473628 CTACACTGGTTGGATTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bbx FBgn0024251 FBtr0100599,FBtr0100598 1 2 2 80 X 21241685 21241706 TTCCTCATATTCTGCAAGAGAC 59 21241746 21241835 TATCTTTGTAATGGCACGGT 59 NA Nonspecific Drosophila melanogaster 50 Cyp6v1 FBgn0031126 FBtr0077276 3 1 1 177 X 20531658 20532010 TCACGATCCTAAGTACTGG 57 20532151 20532169 GTGCAAGAAGTAAACGAGG 58 NA Drosophila melanogaster 50 CG1812 FBgn0031119 FBtr0077313,FBtr0077312 1 2 2 80 X 20385200 20385384 ATAAGCTTTACATCTCTGGTGG 59 20385425 20385443 AGACTTCCGTCTTTGTGTC 59 NA Drosophila melanogaster 50 CG14213 FBgn0031047 FBtr0074744,FBtr0074743 2 2 2 116 X 19533766 19533784 GTACCCTTTCTTGTCGACC 59 19533939 19533957 AGAAAGGTGATCACCTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG12203 FBgn0031021 FBtr0074712 3 1 1 131 X 19387098 19387116 CATTGTCCAACATGAACGT 58 19387211 19387229 TGATGCCGTAGTTCTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7423 FBgn0030982 FBtr0074704 1 1 1 126 X 18977109 18977127 GATCGCTTAATGTGAACGA 57 18977001 18977019 TACTTGTCCTTCCTGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34422 FBgn0085451 FBtr0112722 2 1 2 104 X 18749365 18749383 GTACAACTTCCTCGTCGAG 59 18749515 18749533 TTGATGGTATTGTAGGCCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG7053 FBgn0030960 FBtr0074635 3 1 1 61 X 18686500 18686520 TAAGTTTGACTACTCCACCTC 58 18686543 18686561 TCTTCTTCATGGCGTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6900 FBgn0030958 FBtr0074633 1 1 1 81 X 18679758 18679776 ACTTCAGGTCGTTGTTCTG 59 18679821 18679839 ATCTGGTTGCGTATGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074573,FBtr0074575,FBtr0074574 3 3 6 167 X 18301908 18302558 CCTACCAATGCGAGATGAG 59 18286873 18286892 CCAAGGTGTAGTCCATATCG 59 NA Drosophila melanogaster 50 Frq2 FBgn0083228 FBtr0074547,FBtr0074546,FBtr0074548 2 3 3 120 X 18094919 18094937 AAATCTGGACGAGAAGCTG 59 18095255 18095333 CTGTTGTCCTACCATCTGG 59 NA Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089657,FBtr0089661 1 2 7 102 X 17836890 17836908 AACTACTTCTATCACCGCG 59 17835182 17836825 TGTGTTGACCTAATGTACCT 58 NA Drosophila melanogaster 50 CG6847 FBgn0030884 FBtr0074505 3 1 1 114 X 17816189 17816267 ATATCCGAGAAAGACGATGC 59 17816344 17816362 TGTACGACTTGTAGTGCAG 59 NA Drosophila melanogaster 50 ppk23 FBgn0030844 FBtr0074491 1 1 3 101 X 17461885 17461903 CCTACACATTCTCCTCCTG 58 17461727 17461820 TAGGCACATTAGGTATGGG 58 NA Drosophila melanogaster 50 f FBgn0000630 FBtr0110991,FBtr0074423,FBtr0074420,FBtr0074422 1 4 6 115 X 17166632 17166651 AATACAACGTAGGACGATCC 59 17166729 17166933 GTTCAAATGGTGGTTGCTG 59 NA Drosophila melanogaster 50 CG34326 FBgn0085355 FBtr0112528 1 1 1 63 X 16926402 16926420 ACCCATGTACCATCTACCA 59 16926357 16926375 TCTGTTTGTTCGGATGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 1 7 7 80 X 16273085 16273103 TTTGGTTATGCATGAGCAC 58 16273145 16273233 CAGAAGGCACATTTGTTATCC 59 NA Drosophila melanogaster 50 nonA FBgn0004227 FBtr0074233 3 1 3 65 X 16259644 16259662 TGATTGGAAACAATGCTGC 59 16265362 16265380 TCTCGTTTATAGGACCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG3415 FBgn0030731 FBtr0074209 1 1 1 88 X 16166182 16166200 CATTCTCTTCAACGAGCTG 58 16166250 16166566 TATAGCTACCATTATCCTCGC 58 NA Drosophila melanogaster 50 vap FBgn0003969 FBtr0074141,FBtr0074143,FBtr0074142,FBtr0074140 3 4 4 110 X 15897469 15897569 CTATTTAGTTCGCGAAAGTGAC 59 15897299 15897318 ATATAGAAGTCTCCGCACAC 58 NA Drosophila melanogaster 50 Aats-arg FBgn0027093 FBtr0074178 3 1 1 116 X 15737019 15737100 AATCCAAGAAGCGATTCGA 59 15736921 15736940 CATTGCAAATTAGCTCCCAC 59 NA Drosophila melanogaster 50 CG32598 FBgn0052598 FBtr0073918 2 1 1 71 X 14210364 14210382 GATTCGCTGAGAAGTTTCG 58 14210311 14210332 TAGGTAAATCGACTCCTTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRNA-capping-enzyme FBgn0030556 FBtr0073922 1 1 1 101 X 14135154 14135226 GACGGAAGTTATAGGTCCC 58 14135071 14135089 CAAATGTCCCAGAAGTCCT 59 NA Drosophila melanogaster 50 CG15756 FBgn0030493 FBtr0073783 3 1 1 184 X 13428829 13428908 CGAGTTCAGATATCAGCTG 57 13429056 13429139 ATAATGTCTGCATGTCCAC 57 NA Drosophila melanogaster 50 Jafrac1 FBgn0040309 FBtr0073763,FBtr0073764 2 2 2 99 X 13225457 13225475 TGACAAGTCGATGAAGGTG 59 13225538 13225556 CAAGTTCTGCTTGTCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bap60 FBgn0025463 FBtr0073741 3 1 1 86 X 13052006 13052024 GAGTTCTTCCTAAGCTTCG 57 13051878 13051956 GGTCATCAGCTTCAAATCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG1840 FBgn0030351 FBtr0073571 3 1 1 64 X 11782657 11782676 ATTCGTGGGTATATGGTTCG 59 11782762 11782780 TTCCAGTGAATGGAGACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15740 FBgn0030340 FBtr0073605 2 1 1 60 X 11738273 11738291 GCAGACATCGTCTATGGTC 59 11738231 11738249 TACTTTGAGGAGCCAAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dy FBgn0004511 FBtr0073612 1 1 1 66 X 11666763 11666781 CTACCAGCACAATATGCCA 59 11666604 11666733 GTTCTGGTGATTGTTTCGC 59 NA DesignRelaxed Drosophila melanogaster 50 rho-4 FBgn0030318 FBtr0073518 2 1 3 81 X 11494345 11498350 GAGATATTTGACAAGCACGAC 59 11498393 11498411 AATAGCCATCCGAGATCAG 58 NA Drosophila melanogaster 50 CG1572 FBgn0030309 FBtr0073543,FBtr0073544 3 2 2 81 X 11450009 11450027 ACGTTCTGTTTACTCCTCG 59 11449816 11449967 GGTAAATCAGCTCATAGATCGT 59 NA Drosophila melanogaster 50 CG32666 FBgn0052666 FBtr0073507,FBtr0073508 2 2 2 126 X 11445268 11445287 GAGACCTTCCTCAACATCTC 59 11445376 11445818 CATTCATGCGATCGTTTGG 59 NA Drosophila melanogaster 50 CG15208 FBgn0030247 FBtr0073383 3 1 1 60 X 10795165 10795186 ATTAGAAGTAGATCGGTGTTGG 59 10795207 10795225 AATCGGACGGAAAGAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9689 FBgn0030159 FBtr0071390 3 1 1 60 X 9776161 9776179 CTAAGTCTGCAGAGGATGG 59 9776202 9776221 AATTTGTTGACCTCACTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7267 FBgn0030079 FBtr0071354 3 1 1 208 X 8965964 8965982 GTAACTTGTCCCTCCATCC 59 8965704 8965723 CCTATCGGTATTCAGGAGTC 58 NA DesignNoJunction Drosophila melanogaster 50 oc FBgn0004102 FBtr0089650,FBtr0100341 2 2 2 82 X 8527989 8534405 ATCTAGAGTACAGGTGTGGT 59 8527926 8527944 TCAAGCTATTCGACTGCTG 59 NA Drosophila melanogaster 50 slpr FBgn0030018 FBtr0071184 3 1 1 111 X 8069981 8070059 ATTGGAGATAAGGTCGGTG 58 8069888 8069906 TGTATTCGATCTCATGCGG 59 NA Drosophila melanogaster 50 CG2258 FBgn0029997 FBtr0071109,FBtr0071111,FBtr0071110 3 3 3 80 X 7991100 7991207 CTCAATCGAGAGGATGATCC 59 7991039 7991057 GTCGATAAACATTCGCAGC 59 NA Drosophila melanogaster 50 RpS14a FBgn0004403 FBtr0071094 2 1 2 253 X 7828192 7828210 CCATGTCACTGATCTGTCC 59 7828486 7828504 CAATCTTCATGGACGAACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4615 FBgn0029935 FBtr0071020 1 1 1 183 X 6994193 6994211 ATTACTCACGGCATTTGGA 59 6993966 6994046 CATTCTTCGGTGGTTTGTG 59 NA Drosophila melanogaster 50 CG4542 FBgn0029906 FBtr0070970 2 1 1 102 X 6716153 6716234 AGTGCCAAGAAACAAAGTC 58 6716300 6716318 TTAAGATGGCCTTCTCGTG 59 NA Drosophila melanogaster 50 CG3973 FBgn0029881 FBtr0070948 3 1 1 129 X 6542403 6542541 GATATTCGAGAGGTCACCG 59 6542634 6542652 GTTCTGTAAAGTTGGAGGC 58 NA Drosophila melanogaster 50 CG3566 FBgn0029854 FBtr0089870 2 1 2 259 X 6170583 6170602 ACAACAAGGTCTACGATGTG 59 6169140 6169158 GATCACATAGACCAGCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3160 FBgn0029789 FBtr0070847 2 1 1 80 X 5581342 5581361 TATAACACCACGCTCAATCC 59 5581213 5581301 GGAGTACTCATAGCTGATTCG 59 NA Drosophila melanogaster 50 Rab-RP4 FBgn0015794 FBtr0070849 2 1 1 114 X 5565046 5565128 GATGTGGTGGAGAAGATCG 59 5564950 5564968 AACAGTAACACGTAGACGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG3249 FBgn0029764 FBtr0070795,FBtr0070796,FBtr0070794 2 3 3 103 X 5309430 5309449 AACTTACCAAAGGCATTGTC 58 5309066 5309367 GATTACATTATTGGGACCTAGG 57 NA Drosophila melanogaster 50 CG12688 FBgn0029707 FBtr0070653 2 1 1 71 X 4275984 4276002 AGACCAAGAAGATCCAAGC 59 4277107 4277125 TCGGAGTGTCCTCTAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 cib FBgn0026084 FBtr0070640 2 1 3 64 X 4003988 4004006 GAACAACTTGAAGCACACG 59 4004033 4004204 CTCCTTCTCCTTCCTTATCG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12535 FBgn0029657 FBtr0070534,FBtr0070535 3 2 2 62 X 3287188 3287206 AAGTTTGGTCATGTCCCTG 59 3287144 3287162 TTAGGACATAGAAGTGCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Klp3A FBgn0011606 FBtr0070448 2 1 1 80 X 2494440 2494458 CGAGACAGTGGTACTAAGC 59 2494295 2494396 TCGGATTGAATCCTCTTGG 59 NA Drosophila melanogaster 50 CG12496 FBgn0040385 FBtr0070462 1 1 1 65 X 2304589 2304607 GATATCCGGAATGTCACCC 59 2304542 2304560 CACACTCTGTACCCTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ph-d FBgn0004860 FBtr0112843,FBtr0070433 1 2 2 70 X 2011730 2011748 ATATGCAGACAAAGACGTC 57 2011615 2011633 TTAGCTTGATGTCCTCCTG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG32810 FBgn0025394 FBtr0070260 2 1 1 145 X 1408638 1408656 TGAGTTCTACAACGTGACG 59 1408823 1408905 ACAGCGTTGAGATCATCTG 59 NA Drosophila melanogaster 50 CG3056 FBgn0024987 FBtr0070215,FBtr0070214 2 2 2 106 X 1265710 1265728 TCAATTACTTGCCACAGGA 58 1265798 1265956 ATATCCGGTCTTGAAGTCG 58 NA Drosophila melanogaster 50 CG41586 FBgn0085710 FBtr0114159 1 1 1 60 U 7473446 7473464 TGTCAAGCGACCATATGAG 59 7473488 7473506 GGCTCATCTATATCCAGGT 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41010 FBgn0085552 FBtr0113965 3 1 1 133 U 6449634 6449654 GGAAACTATCAAGGAGTACTG 57 6449521 6449539 TTGTGGTCATAATGCTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41518 FBgn0085663 FBtr0114108 2 1 1 122 U 2350212 2350230 CTTGATCCGCACAAATAGC 59 2334333 2349621 TGTATTGACCTAAAGGCCAG 59 NA Drosophila melanogaster 50 CG40339 FBgn0058339 FBtr0113867 1 1 2 136 U 1062290 1062308 TACCCAATGGTGATTGAGG 58 1062853 1062871 TGCCTTTCGTTATCTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33521 FBgn0053521 FBtr0091471,FBtr0091472 1 2 4 191 4 1207180 1207198 TTCGGAAATGGATTACCCT 58 1208238 1208378 CTTCTCAGGTATTGTAGATCG 57 NA Drosophila melanogaster 50 CaMKII FBgn0004624 FBtr0089217,FBtr0089218,FBtr0100148,FBtr0089219,FBtr0100146,FBtr0100147 1 6 6 80 4 1068496 1068515 GGATATCTGTCTCCTGAGGT 59 1068342 1068456 GTAAAGAATAACTCCACATGCC 59 NA Drosophila melanogaster 50 CG11148 FBgn0039936 FBtr0089250,FBtr0089249,FBtr0089248 1 3 3 81 4 880999 881075 AAAGTTGATGTACCCACGT 59 880936 880956 GGTATATTCGGACATAGTCCT 58 NA Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 2 8 8 80 4 671647 672939 ACAGCACAGATTGATGGTC 59 671585 671604 GTTCAAATACGGGTGAAAGC 59 NA Drosophila melanogaster 50 CG34013 FBgn0054013 FBtr0100068 3 1 1 81 4 279988 280082 ATGATCAGAATCCTCGCTC 58 280127 280145 ATAGTAACGTTCCGTTTGC 58 NA Drosophila melanogaster 50 Ank FBgn0011747 FBtr0089172,FBtr0089171,FBtr0089174 1 3 4 80 4 149994 150012 CAAGAAGTGAAACCTGTGC 59 144503 149950 AAATGGTTGCGTCATTCTG 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-301 FBgn0083039 FBtr0113583 3 1 1 70 3R 16400694 16400712 AAACTGTGTCGATTACCGT 59 16400746 16400764 CATGTCTGAGTCTTACGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 2 14 14 109 3R 27690344 27690863 AAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 Ef1alpha100E FBgn0000557 FBtr0085834,FBtr0085835,FBtr0085833,FBtr0085832 3 4 4 189 3R 27567379 27567397 TGGTCACCGAAGTAAAGTC 59 27567550 27567645 TTGAGCACAATCACCTGAG 59 NA Drosophila melanogaster 50 Med FBgn0011655 FBtr0085815 2 1 2 147 3R 27438273 27438291 TGAAGGACGAATACTCAGC 59 27438402 27438618 GCATCGCCAACATATTCAG 59 NA Drosophila melanogaster 50 CG15553 FBgn0039817 FBtr0089392 1 1 1 80 3R 26925153 26925171 TCTTTCGTTCCATTCAGGG 59 26925032 26925109 CAAACAGCTTACCAGTGTC 58 NA Drosophila melanogaster 50 CG9733 FBgn0039759 FBtr0085638 2 1 1 188 3R 26071289 26071307 CGATATGTCCTCACAGCTG 59 26070296 26070314 GCTGTATCTTTCGTGAACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG1983 FBgn0039751 FBtr0085574 3 1 1 144 3R 26002802 26002906 TCAACAAGATCCTTTCTGTG 57 26002677 26002696 CTAGTGTTGATCTGGATGAG 57 NA Drosophila melanogaster 50 trp FBgn0003861 FBtr0085513 1 1 1 102 3R 25743588 25743608 GGATCTTTGGAACATAGTGGA 59 25743449 25743524 GAACCAGAGATCACGATGG 59 NA Drosophila melanogaster 50 CG7609 FBgn0027518 FBtr0085543,FBtr0085542 1 2 2 105 3R 25569982 25570000 ATCAAGGTGTGGAACATGG 59 25569833 25569916 CGATGTGATAAGTTCTTTCTGG 59 NA Drosophila melanogaster 50 CG2010 FBgn0039667 FBtr0085428,FBtr0085427 2 2 2 119 3R 25323843 25323861 TAAGTTTATACAGCGCCAG 57 25323944 25324030 ACAATGATCTTGCAGTTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 1 8 8 120 3R 24962131 24962214 CCAATGATAAGCCCTACTCC 59 24962294 24962315 CCCATGAACATATAGGTTTCAC 58 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 2 8 8 121 3R 24962130 24962213 ACCAATGATAAGCCCTACTC 58 24962294 24962315 CCCATGAACATATAGGTTTCAC 58 NA Drosophila melanogaster 50 Ppn FBgn0003137 FBtr0085295,FBtr0085294 1 2 2 93 3R 24351202 24351220 TTCTACTACAGCGGTTGTG 59 24351018 24351146 AGATGTCCTTAGCAACTTGG 59 NA Drosophila melanogaster 50 CG34362 FBgn0085391 FBtr0112582,FBtr0112583 2 2 2 157 3R 23903909 23903927 AAACCTTGAAGTCGAAGGG 59 23904345 23908633 CTTGATGTTCTCTTTACTCGC 59 NA Drosophila melanogaster 50 Gr98c FBgn0046886 FBtr0085187 3 1 1 92 3R 23371394 23371463 TTATTTGGAGGGATGCTGG 59 23371518 23371537 TTGTCTGTAGCCGATTAGAG 58 NA Drosophila melanogaster 50 CG5938 FBgn0046247 FBtr0113355,FBtr0085159,FBtr0085160 1 3 5 126 3R 23101495 23102020 GCAACATGACGGTATTTGG 59 23102110 23102128 GATTTCTTCAGCACTCCGT 59 NA Drosophila melanogaster 50 gb FBgn0039487 FBtr0085132 1 1 1 118 3R 22935942 22935960 TACATCTCCCTACCTCTGG 59 22935591 22935860 TTATCGCCAAAGGTCACAG 59 NA Drosophila melanogaster 50 spz FBgn0003495 FBtr0114372 1 1 12 105 3R 22892470 22892488 AGTATCACAGCCTGATCCA 59 22892166 22892339 CGATACTTGGTATCCGATGG 59 NA Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100338,FBtr0100334,FBtr0085092 1 3 9 134 3R 22699712 22699802 AACAGCTACCCATATACGG 58 22699596 22699614 ATATTTGCTGTTGGCACTG 58 NA Nonspecific Drosophila melanogaster 50 Hex-t2 FBgn0042710 FBtr0085011 1 1 1 60 3R 22277324 22277342 ATAATCAACTGCGAGTGGG 59 22277366 22277384 AAGTTCGAACGAACTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fur1 FBgn0004509 FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986 3 5 6 197 3R 21182169 21182187 GAGACGAGGAGACATTCAG 59 21180028 21181955 GTGATTTGTGCCATATAGCG 59 NA Drosophila melanogaster 50 CG31087 FBgn0051087 FBtr0084855 3 1 1 80 3R 21137039 21137117 GGTTTGGCTGCTTATATGG 58 21136977 21136995 GCTTTCCAGATTAGCATCG 58 NA Nonspecific Drosophila melanogaster 50 CG10550 FBgn0039321 FBtr0084857,FBtr0084858 2 2 3 227 3R 21133346 21133425 ATATACTGCTGAAGGATGGC 59 21133138 21133156 TAATCAATTCGTCAGTGGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG10420 FBgn0039296 FBtr0084870 3 1 1 60 3R 21060516 21060535 CCATCAGATAGACAATGCCT 59 21060475 21060495 CAGTAGTACATCATCCAATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13663 FBgn0039291 FBtr0084873 1 1 1 60 3R 21040537 21040555 ACAGATCATCACCACAAGG 59 21040495 21040513 GCAGATAGACAGTCCAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11920 FBgn0039274 FBtr0084769 3 1 1 60 3R 20901486 20901505 ATGAACAGAGGAAACTACCA 58 20901527 20901546 TTACATTATTGGCACGACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9996 FBgn0039273 FBtr0113285 3 1 1 92 3R 20899625 20899897 TAACGAATTGCAGACTGGG 59 20899551 20899572 GCTGACTTAATCATAACCAGAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG11791 FBgn0039266 FBtr0113283,FBtr0084762 1 2 3 60 3R 20877255 20877274 CACATCTACAATTGCCTGAG 58 20878221 20878241 CCTTAAAGCTGCTCTTATCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31110 FBgn0051110 FBtr0084792 2 1 1 80 3R 20869767 20869841 CTTTCCGGAGTGTAAATGG 58 20869705 20869723 TTGACTAGATCGATGACGG 58 NA Drosophila melanogaster 50 nAcRalpha-96Aa FBgn0000036 FBtr0084619 1 1 1 98 3R 20247488 20247506 AACTACAATCGCCTCATCC 59 20240605 20247429 CTTTAGATTCACATCGATCAGC 59 NA Drosophila melanogaster 50 CG5746 FBgn0039186 FBtr0084631,FBtr0084630 1 2 2 115 3R 20172702 20172814 TCAGAACTACAACTCGACG 59 20172605 20172623 GTCCGGTAGCATTGTAGTC 59 NA Drosophila melanogaster 50 BRWD3 FBgn0011785 FBtr0084604 1 1 1 85 3R 20146560 20146578 CTTAAGGGACTACTGCACC 59 20146627 20146706 GAACGCGATCTAAGTTGTG 58 NA Drosophila melanogaster 50 Hmgcr FBgn0001205 FBtr0084451,FBtr0084450 2 2 2 70 3R 19574394 19574476 TATCATCAAATGGCTGACC 57 19574510 19574528 TAACTACCAAGGCGATGAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG10300 FBgn0039107 FBtr0084445 2 1 1 76 3R 19538174 19538261 AAACTGCCTTTCAAGTTCG 58 19538301 19538319 ATGGTCATCACATCTCTGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG10254 FBgn0027512 FBtr0084476,FBtr0084477 2 2 2 117 3R 19516918 19516936 GGTAATAGAAGATCCGCCG 59 19516756 19516840 GCCAGAATCATTCTTAGTACGA 59 NA Drosophila melanogaster 50 Ir FBgn0039061 FBtr0113273,FBtr0084371 3 2 2 168 3R 19009810 19009828 TGATAGGAACAGTCCACTG 58 19010018 19010036 CACATTCACGAAACGATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7059 FBgn0038957 FBtr0084221,FBtr0084219,FBtr0084220 2 3 3 139 3R 18217576 18217650 CACATTGAGGGAATCTCCA 58 18217751 18217771 CGCCTAATATACTCCTGATCC 59 NA Drosophila melanogaster 50 GABA-B-R2 FBgn0027575 FBtr0084168 2 1 2 174 3R 17597551 17597631 CACCACAGAAGTTACCGAG 59 17597338 17597356 CATCATAGTTGGAGCAGGG 59 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0110937 1 1 12 157 3R 17036279 17036297 CTTCTACTCGAATCATGCG 58 17036418 17036519 CGTCCTCTTCTTTCTTGAG 57 NA Drosophila melanogaster 50 CG4462 FBgn0038752 FBtr0083850 3 1 1 178 3R 15748415 15748433 GTACCGAACACTATTGCCA 59 15748025 15748101 AGATCAGCATCCATTGAGTC 59 NA Drosophila melanogaster 50 CG4465 FBgn0038750 FBtr0083851 1 1 1 65 3R 15743360 15743378 ATCTCCTCAAACTCCACAC 58 15743313 15743331 GTGATGACATCGTCATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3517 FBgn0038706 FBtr0083770 3 1 1 60 3R 15250575 15250593 ATGATCATCTGTGGACTGC 59 15250533 15250553 CATATGTGATAATGTCCACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5316 FBgn0038704 FBtr0083759 3 1 3 61 3R 15229790 15229808 CCAAGAAGCATTGGAACTC 58 15229831 15229851 AATAGCCTTACTTGTGTAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31404 FBgn0051404 FBtr0083774 2 1 1 60 3R 15201058 15201076 CTTCGCAAAGATAACGCTC 59 15201016 15201035 AGTAGGTGAATATACCCGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5451 FBgn0038666 FBtr0083721 3 1 1 152 3R 14806342 14806416 AACGTTACAGGAGGAAACG 59 14806208 14806227 TGCTCGTATAGATTGAGCAG 59 NA Drosophila melanogaster 50 Rh2 FBgn0003248 FBtr0083697 3 1 1 128 3R 14726195 14726213 TGTCATTTGCTACTTCGGA 58 14726305 14726405 TACTTGGGATGGCTAATGC 59 NA Drosophila melanogaster 50 14-3-3epsilon FBgn0020238 FBtr0083567,FBtr0083565,FBtr0083566,FBtr0083568 2 4 4 80 3R 14073560 14073579 ATATTGCCATGAACGATCTG 58 14073621 14073708 TCTCATAGTAGAACACCGAG 57 NA Drosophila melanogaster 50 CG7156 FBgn0038588 FBtr0083607 3 1 2 135 3R 14067506 14067524 CAAGAGTCTCCAACTACCC 58 14067312 14067331 TATAGCTTCTTAAGTGGCGA 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7785 FBgn0038564 FBtr0083539 3 1 1 95 3R 13848386 13848461 TCATTTATGTGGGCAATGG 58 13848520 13848538 ACTGTTCCAATAGAATGCG 57 NA Drosophila melanogaster 50 CG17283 FBgn0038505 FBtr0083437 3 1 1 60 3R 13234381 13234399 GGATATCGATCCATAGCGG 59 13234423 13234441 CCTCCGAGCACATATTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cctgamma FBgn0015019 FBtr0083338,FBtr0083337 2 2 2 85 3R 12474348 12474433 CATTAAACGCTATGCCAAGG 59 12474481 12474499 CTTTGTTGATCATCACGCC 59 NA Drosophila melanogaster 50 Mst89B FBgn0020399 FBtr0083260 3 1 1 135 3R 12093123 12093141 TTTGGATGATCTTCTCCGC 59 12093315 12093333 GTAGCAAAGTGGTAAACGG 58 NA DesignNoJunction Drosophila melanogaster 50 Acyp2 FBgn0038363 FBtr0083174 1 1 1 164 3R 11618599 11618617 TTCGAGATCTTTGGACGAG 59 11618867 11618944 CAGCCAATGTTTCATTTCCA 59 NA Nonspecific Drosophila melanogaster 50 CG31302 FBgn0051302 FBtr0083097,FBtr0083096 3 2 3 132 3R 11209087 11209153 GCTACTCAAGCCTCTTGAG 59 11209249 11209267 GATATGGATGATAGGCCGC 59 NA Drosophila melanogaster 50 CG6934 FBgn0038289 FBtr0083039 3 1 1 66 3R 10937536 10937554 ATCTGGATGTACGGAAGTG 58 10937488 10937507 AGTTTCATTTGCTAACCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL10Aa FBgn0038281 FBtr0083024 1 1 1 60 3R 10863378 10863396 AGCCATAGGAGTTGATTGC 59 10863420 10863438 CTTGGGATCTTTGTTCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3731 FBgn0038271 FBtr0083000,FBtr0083001 1 2 2 80 3R 10717532 10717550 CAACACATGCTACAAGGAC 58 10717594 10717686 TTGAAGAGCATATCCTCGC 59 NA Drosophila melanogaster 50 CG33330 FBgn0053330 FBtr0082990 2 1 1 61 3R 10620682 10620700 CATGCAGTCCTTGATTTCC 58 10620725 10620743 GATCTGGTTCCGATAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kif19A FBgn0038205 FBtr0082912,FBtr0082911 1 2 2 80 3R 9939295 9939315 GCATATGATTATCTCCCACTG 58 9939173 9939253 CCTTCTGATTCAATGTCGT 57 NA Drosophila melanogaster 50 Art9 FBgn0038188 FBtr0082879 1 1 1 84 3R 9768735 9768756 GAAGGTCGATATAATAGTGTCC 57 9768613 9768631 TTCTCTGGCAAAGATCACC 59 NA DesignNoJunction Drosophila melanogaster 50 yellow-e FBgn0041711 FBtr0082757 1 1 1 82 3R 9236552 9236570 GTTTGACTTTCGATGAGCG 59 9236111 9236129 GACATTCTTATGCACGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG8795 FBgn0038139 FBtr0100149,FBtr0082774,FBtr0082773 2 3 3 128 3R 9157366 9157632 TTTGTTATGCTCAGGAATGC 58 9157257 9157275 GTTAGAACTGTCGCATTGG 58 NA Drosophila melanogaster 50 Osi22 FBgn0038133 FBtr0082738 1 1 1 60 3R 9117014 9117034 GACATGAGCAACGATATAGTG 58 9117053 9117074 CAATGATCTCCTTGAGATTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 beat-Vb FBgn0038092 FBtr0082684 3 1 1 95 3R 8759112 8759133 CTTTAATGACTTCGTAGAGGTC 58 8759188 8759266 ACCAGAGAAACCTTTATCCC 59 NA Drosophila melanogaster 50 beat-Vc FBgn0038084 FBtr0082658 3 1 1 64 3R 8578160 8578178 TCAAGCTGATCGATCAGAC 59 8573260 8573279 AATGAACGGATCGAATTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 Men FBgn0002719 FBtr0082660,FBtr0082661 3 2 2 179 3R 8539997 8540015 TCTTGGTATTGCCAACCTG 59 8539780 8539798 AAAGTATCGATGGGTTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 Men FBgn0002719 FBtr0082660,FBtr0082661 2 2 2 179 3R 8539998 8540016 CTCTTGGTATTGCCAACCT 59 8539781 8539799 AAGTATCGATGGGTTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14394 FBgn0038079 FBtr0114499,FBtr0113228,FBtr0114500 1 3 6 65 3R 8522003 8522021 TCTGTCCATAGTCATGCAG 58 8522474 8522492 TTTATGTTGAGACTCCCGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG14714 FBgn0037929 FBtr0082422,FBtr0110810,FBtr0113222 3 3 3 63 3R 7498478 7498496 CAATCATAGCAGCTATGGC 58 7498523 7498541 ATAGCGATCCTTGACTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14708 FBgn0037910 FBtr0082409 2 1 1 61 3R 7380010 7380030 TCGAGTCTCTACAATATCGAC 58 7380053 7380071 CTATCCAGATTCACGGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pug FBgn0020385 FBtr0100144,FBtr0082266,FBtr0082264,FBtr0082265 1 4 4 122 3R 6525707 6525725 GACTCCAACGTTTACATCC 58 6525808 6525952 CAGATCGTTTATCTTATCGAGC 58 NA Drosophila melanogaster 50 hth FBgn0001235 FBtr0082255,FBtr0082256 3 2 6 110 3R 6359728 6387646 GATACATCAGACCCTGATGG 59 6359637 6359655 ACTACCGAGGAAGACTGAG 59 NA Drosophila melanogaster 50 Bruce FBgn0037808 FBtr0082239 1 1 1 80 3R 6144747 6144766 GATTACTCTCAACGACAAGG 57 6144629 6144706 GGAATAGTGGTTTCTTCAAGG 58 NA Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210 2 5 8 81 3R 5834566 5835033 CTACGAAGGTTCAAACCGA 59 5834503 5834521 GAGTCGGTGGATATCTCAG 58 NA Drosophila melanogaster 50 bocksbeutel FBgn0037719 FBtr0082105,FBtr0100537 3 2 2 61 3R 5415792 5415810 TTAGTGGATCCAATCTGGC 59 5415749 5415767 TAGAGTGTTTACTGCGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kap-alpha3 FBgn0027338 FBtr0082108,FBtr0082106,FBtr0082107 1 3 3 116 3R 5402864 5402942 GAAAGACCAGGATGAAATGC 59 5402767 5402785 GTGTTCGAGTCCAAATTGG 59 NA Drosophila melanogaster 50 CG11980 FBgn0037652 FBtr0081962,FBtr0081963 1 2 3 101 3R 4830105 4830125 CCAAATAACCTTCAAGGAGAC 58 4830244 4830263 TAGTGACAGTAGACCAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11755 FBgn0037611 FBtr0081903 2 1 1 60 3R 4504194 4504214 TTGCTCTAGGAGTCATATACC 58 4504236 4504254 GGTGGTTGGAAAGGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17944 FBgn0037500 FBtr0081590,FBtr0081589 2 2 2 63 3R 3187264 3187282 GATCCGAGATCATTCTCCC 58 3187219 3187240 CGTCGTAAATGGACTTTATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ftz FBgn0001077 FBtr0081625 3 1 1 60 3R 2690209 2690227 TACGATAATTCAGGCAGCA 58 2690248 2690269 GATAGTAGCCCTGATAATTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1021 FBgn0037443 FBtr0081731,FBtr0081732 2 2 2 173 3R 2216935 2217034 CAGAGACGATAATGTCAACGA 59 2216715 2216733 TGATTCTGCAAGTCCTTGG 59 NA Drosophila melanogaster 50 exba FBgn0037346 FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745 3 7 7 85 3R 1423978 1423999 GGTTCTATTATTCGTAAAGGGC 58 1423648 1423932 CAGAACCGTTGACTAACCA 59 NA Drosophila melanogaster 50 CG14669 FBgn0037326 FBtr0078679 1 1 1 170 3R 1280551 1280571 TCAGATCTTGGACAGTTTCAG 59 1281082 1281181 TAGTTATATTGCGCCGAGC 59 NA InUTR Drosophila melanogaster 50 7B2 FBgn0041707 FBtr0078789,FBtr0100112 1 2 2 69 3R 1203302 1203320 CAGGATAGTGCTGATGTGG 59 1203353 1203371 TCTGCATGATGTACTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED31 FBgn0037262 FBtr0078856,FBtr0078857 1 2 2 80 3R 468366 468479 CCAACTATCTAAACTTCCTTGC 59 468519 468538 AGTACTGCAGATACTTCAGG 58 NA Drosophila melanogaster 50 CG1090 FBgn0037238 FBtr0078912 1 1 2 109 3R 189422 189442 CTTATCCTCCACATACTGGTG 59 189513 189951 GATAGCTTTAGCTCCTCGC 59 NA Drosophila melanogaster 50 snoRNA:Or-CD11 FBgn0086082 FBtr0114358 1 1 1 61 3L 20446836 20446854 AATGTGAAGAGCATTCCAC 58 20446879 20446897 ACGGAATAGTCAAGCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-3327a FBgn0082967 FBtr0113611 3 1 1 92 3L 13035887 13035905 TTTGCGTGTAGAATAGTGC 58 13035960 13035979 AATCAACTGGGATTTGTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40057 FBgn0058057 FBtr0111159 1 1 2 125 3L 24518909 24518930 CGAATGCAATGGATATGATGTC 59 24518394 24518823 GATCTATGAGTGTGGCGAC 59 NA Drosophila melanogaster 50 CG11523 FBgn0037156 FBtr0078511 2 1 1 60 3L 22259529 22259547 TTGCATCTCATCCAAACTG 58 22259487 22259505 GATAGTCCGGATGTTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mub FBgn0014362 FBtr0078469,FBtr0111017,FBtr0078468,FBtr0078470 1 4 4 80 3L 21907919 21907998 GATTTCGTGAAGAGTCTGGT 59 21908041 21908059 TTGTACCAGACACAGTCAC 59 NA Drosophila melanogaster 50 CG14572 FBgn0037128 FBtr0078434 2 1 1 70 3L 21734694 21734712 CGTTATCCTTTGCCTTTGG 59 21734746 21734764 CATACCGGTTGATCCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6014 FBgn0027542 FBtr0078346 3 1 1 81 3L 21404666 21412712 TCTTAACCAATAGCCCGTC 59 21412756 21412775 GCTGGTTGTATTATGCTCTG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 Eip78C FBgn0004865 FBtr0078307,FBtr0078306 2 2 3 92 3L 21224332 21224350 CTGGTCATCAGACTGAACC 59 21224406 21256109 ACCATAACGTACGGAATCG 59 NA Drosophila melanogaster 50 eRF1 FBgn0036974 FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177 1 6 6 80 3L 20344766 20344787 GGAGATTATCACGGATAAGTCC 59 20344828 20345922 TTGTAGCGTAAGATACCGC 59 NA Drosophila melanogaster 50 CG6680 FBgn0036968 FBtr0074842,FBtr0074841 1 2 2 80 3L 20312175 20312194 GCCACAGGATGTATATGGAG 59 20312236 20312311 TTGTTGAAGGGAAACTTCCA 59 NA Drosophila melanogaster 50 CG8004 FBgn0036920 FBtr0074915 3 1 1 67 3L 19921025 19921043 TCTACAAAGAGGTCACAGC 58 19920976 19920994 GTTCTGCATGTGATTGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9372 FBgn0036891 FBtr0074945 1 1 1 90 3L 19600844 19600863 AGATTGGTCGGATAGAAACG 59 19600916 19601111 CAGGTTAACCTCCATGAGG 59 NA Drosophila melanogaster 50 rept FBgn0040075 FBtr0074988 1 1 1 60 3L 19249613 19249631 CACTAACTATCGCAGTCCG 59 19249653 19249673 TATGATGATCATGCGATCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6865 FBgn0036817 FBtr0075060 2 1 1 189 3L 18858236 18858255 AGAGCAATACCATTGGAGAG 59 18858469 18858487 GACACGTATTTACTGACGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32188 FBgn0052188 FBtr0075164 1 1 1 69 3L 17826549 17826567 CAACAACTGATTCGTCCAC 59 17826498 17826516 TTCTTCTTTGTGGAGGCAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6479 FBgn0036710 FBtr0075246,FBtr0075245 3 2 2 93 3L 17330908 17330927 CTCTTGCATAGCTGACTACC 59 17330775 17330855 GAATATTATAGCTGCATCGGTG 59 NA Drosophila melanogaster 50 l(3)73Ah FBgn0002283 FBtr0075311 1 1 1 81 3L 16582261 16582354 AACTGCAAGAAGATGAATCG 58 16582398 16582416 TTCTGCGTGATATCCTTGG 59 NA Drosophila melanogaster 50 CG4729 FBgn0036623 FBtr0075417,FBtr0075419,FBtr0075418 1 3 4 81 3L 16377075 16377093 ATCAAGCCCATAGACAAGC 59 16376952 16377031 ACACGAAGATAAGTTGGGAG 59 NA Drosophila melanogaster 50 CG13060 FBgn0036606 FBtr0075370 1 1 1 66 3L 16313032 16313110 AAATTTATCGGCGTCATCG 58 16313140 16313158 CATGGTGAGTCTCGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33687 FBgn0053687 FBtr0091667 2 1 1 99 3L 16191403 16191421 TCAACCTTCATCAATGCCT 59 16191554 16191572 GATATCGCAAGAATGCCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG13445 FBgn0036532 FBtr0075503 3 1 1 91 3L 15802892 15802910 TCATCGAGTATCCTGAAGG 57 15802965 15802983 TTAAGATTCATTGGAGGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 comm FBgn0010105 FBtr0075579 3 1 1 60 3L 15715951 15715969 CATCCTCTTCGGAATCCAG 59 15715909 15715927 GGCATGTTAATGCAAATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12355 FBgn0040805 FBtr0075606,FBtr0113333 3 2 2 176 3L 15486579 15486598 CGCCTTATCTATTGACTGTG 58 15486284 15486303 TATAGATGACACGGAATCGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG32147 FBgn0047178 FBtr0075647 3 1 1 60 3L 15136486 15136507 GGCTATATCTATCTGAAATCGC 58 15136447 15136465 GTACATGGACAAACAGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10006 FBgn0036461 FBtr0075628,FBtr0113171 2 2 2 88 3L 14989466 14989485 GATCGATAATGGAGTTTGCA 58 14989536 14989611 CATAGATCCAAGCGTACCA 58 NA Drosophila melanogaster 50 CG9425 FBgn0036451 FBtr0075692 2 1 2 278 3L 14788839 14788983 TACAAGGATCATCCTGCTG 58 14789223 14789243 CTGGTATCATTCAGTTTACCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG13479 FBgn0040811 FBtr0075721 2 1 1 285 3L 14561147 14561167 CCATATTTCATCAGCACTTGG 59 14560882 14560900 TACAGAACCTTCTGCACTC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11251 FBgn0036346 FBtr0075891 3 1 1 60 3L 13082076 13082094 CTTATTCACCGCCTATCCC 59 13082034 13082054 TTCCCGTTAGTATAATGTCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS12 FBgn0014027 FBtr0075878,FBtr0075880 2 2 2 60 3L 13016618 13016842 GTTGATGTTGATGTTCCCT 57 13016866 13016884 CAGTGTTAATGTCCATGGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG11008 FBgn0036315 FBtr0075932 1 1 1 60 3L 12814311 12814330 AATACTCCAACCACAATGCT 59 12814353 12814371 AATCTCCTTCAACTGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ptp69D FBgn0014007 FBtr0075913 3 1 2 138 3L 12731790 12731876 AGAGATTCTTTGAGCAGGG 58 12731978 12731996 TATGTCGGTTCTTGTAGGC 59 NA Drosophila melanogaster 50 Ncc69 FBgn0036279 FBtr0075987,FBtr0075988 3 2 2 93 3L 12362374 12363044 AAATTGAGAGTTTACGCGC 59 12362299 12362317 AATCGATCCGGAATTTCGA 59 NA Drosophila melanogaster 50 CG9760 FBgn0036259 FBtr0076021 1 1 1 136 3L 12151110 12151128 ACTCCATCGGGATATTGTG 58 12150942 12150960 ATTGTGCACATTTCCACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6793 FBgn0036242 FBtr0076051 2 1 1 60 3L 12035673 12035691 AGAAACTTCGAATCGGAGG 59 12035715 12035733 ATGCAGAGATTTCGACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32094 FBgn0052094 FBtr0076081 2 1 1 83 3L 11806613 11806632 TAACACTCCAGGAAGTTACC 58 11806486 11806504 AACAGACAAGTGTTGTGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Or67c FBgn0036078 FBtr0076300 1 1 1 90 3L 10236594 10236613 GTTGCTAATCATGAGGAGTC 58 10236471 10236542 GCTGATGACCTTCATATAGG 57 NA Drosophila melanogaster 50 CG33926 FBgn0053926 FBtr0091930 2 1 1 78 3L 9436443 9436461 TCCTCCAATATTAGGGCCA 59 9438840 9438858 CAGTGATCTCCATGTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rdl FBgn0004244 FBtr0076536 1 1 3 91 3L 9156062 9161908 GTTCTAATGGACTTCACATTGG 59 9155992 9156010 AGTGTTTCTACACCAGGTC 58 NA Drosophila melanogaster 50 CG5026 FBgn0035945 FBtr0076516,FBtr0076515 3 2 2 122 3L 8963883 8963901 GTCTTATTTGAACCGGCCT 59 8963985 8964058 AAATAGAGATCACTCCACAGC 59 NA Drosophila melanogaster 50 Tsp66E FBgn0035936 FBtr0076507,FBtr0076508,FBtr0076506 2 3 3 85 3L 8919886 8921125 CGCATTGAGCAATTTACAC 57 8921174 8921192 CTCATGAAGAACATGACGG 58 NA Drosophila melanogaster 50 CG13306 FBgn0040828 FBtr0076592 2 1 1 66 3L 8742520 8742538 ATGGTTACATGGGTTTCGG 59 8742472 8742490 CATTGGAAGTGATACGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Prm FBgn0003149 FBtr0076593,FBtr0076594 2 2 4 143 3L 8732791 8732809 ATCATCCTGTACGAGACCA 59 8732581 8732686 CTCATGAAGATCATCTCCCAG 59 NA Drosophila melanogaster 50 Cp15 FBgn0000355 FBtr0076572 1 1 1 154 3L 8721893 8721911 GAGGGTAATGGAGGAAGTG 59 8722029 8722047 AATTAGTAAGCACGTTGGC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 se FBgn0086348 FBtr0076623 1 1 1 96 3L 8514299 8514320 GTGGAGAGGATTATAACTACGA 58 8514434 8514452 ATGTAGAAGGCCATCACAG 59 NA DesignNoJunction Drosophila melanogaster 50 ImpE1 FBgn0001253 FBtr0076606 2 1 2 166 3L 8373010 8373028 AATAGCAGTTGTCTGGAGG 58 8378901 8378919 AAGAGATTCGGGATGAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 Idh FBgn0001248 FBtr0076671,FBtr0114548,FBtr0114547,FBtr0076668,FBtr0076673,FBtr0076669,FBtr0114549,FBtr0076667,FBtr0076670 1 9 9 60 3L 8350349 8350367 TCTGAAGAAGTACGATGGA 57 8350307 8350325 GTACTGCTTGTTGTACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8605 FBgn0035762 FBtr0076838 1 1 1 80 3L 7317837 7317913 GACTACAATCTCAGGCTGG 59 7317956 7317975 AATCTGTTCTATGTCCACCG 59 NA Drosophila melanogaster 50 unc-13-4A FBgn0035756 FBtr0076887 1 1 1 80 3L 7262829 7262847 CGTGGTCATTGAACTACTG 58 7262644 7262786 TTAAGAGTACGCTTATGCAC 57 NA Drosophila melanogaster 50 msl-3 FBgn0002775 FBtr0076926,FBtr0076927 2 2 2 87 3L 7117435 7117511 GTTATGTCCACTGTCTGCA 59 7117366 7117385 TATACAGCAAGTGGTCATCC 59 NA Drosophila melanogaster 50 CG33171 FBgn0053171 FBtr0089837 3 1 2 163 3L 7042667 7043281 ATACGAAACGTGGTATCCG 59 7043785 7044349 TCTGTACCCTGGATGAGAG 59 NA Drosophila melanogaster 50 Jon65Aiii FBgn0035665 FBtr0077041 2 1 1 60 3L 6044354 6044372 CCGCCCTTATTAACAAGGT 59 6044396 6044414 CCAGTGTAAGTGGAGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PGRP-LD FBgn0035635 FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577 3 4 4 107 3L 5775936 5776021 TGCATAAGCTGGAAAGGTC 59 5776092 5776110 GATACTGGCTCCGATAGTG 59 NA Nonspecific Drosophila melanogaster 50 mthl2 FBgn0035623 FBtr0077088,FBtr0077087 1 2 2 80 3L 5599497 5599577 TCGGACAAACAGAATTACAC 58 5599617 5599638 GTAGGAGAATATCTCAAAGCTC 57 NA Drosophila melanogaster 50 CG34266 FBgn0085295 FBtr0112461 1 1 1 64 3L 4677910 4677928 AATGCTCTACGTCAAGGTG 59 4677956 4677974 TTTGCTCGGCTATAAGCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 pfk FBgn0035405 FBtr0073028,FBtr0073027 3 2 2 60 3L 3160956 3160974 ACAAATGATCGACGAGGAG 59 3160998 3161016 AGTACCAGCTTCTAGTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or63a FBgn0035382 FBtr0072977 2 1 1 81 3L 2962474 2962568 ATAATGTTACCTCTGCCATCTC 59 2962604 2962628 GGTACATCTGTATATGATAGTAGGG 59 NA Drosophila melanogaster 50 CG12093 FBgn0035372 FBtr0073015 1 1 1 68 3L 2773115 2773133 ATTAGCTACTCCCATCTGC 58 2773007 2773025 ATAGGTGCCATATTCAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1017 FBgn0035294 FBtr0072841 3 1 1 183 3L 1942197 1942215 GAACTCAAGCGAATGAAGC 59 1942422 1942442 GATGATAGTACTTCTGCAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG12022 FBgn0035276 FBtr0072782 2 1 1 102 3L 1804302 1804320 CAAATACCTCCCAACAGTC 57 1804447 1804465 AACTTAACGTACAGCTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG13919 FBgn0035248 FBtr0072759 3 1 1 63 3L 1645836 1645854 ATTCCCATATACGTGACCG 58 1645881 1645899 CAACATAGAAGATGGCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12105 FBgn0035241 FBtr0072824 3 1 1 60 3L 1614779 1614798 GAAATAGATGTAGGCGGAGG 59 1614738 1614756 CATTATCAAACATCGGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13896 FBgn0035159 FBtr0072602 3 1 1 62 3L 711474 711497 GAAGACCTACTATAGCATAAGGAG 59 711435 711453 CAGTTTGGATGGAAATGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13884 FBgn0035138 FBtr0072568 3 1 1 92 3L 366257 366275 GACTACAATCATGGTGGCT 59 366183 366202 ATAACTTCCAAATAGCGGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1233 FBgn0035137 FBtr0072549,FBtr0072548 2 2 2 134 3L 364780 364798 CACCTGTGATCATGAGACC 59 364896 364975 TGAAGGTGTATCCGAAAGG 58 NA Drosophila melanogaster 50 CG7049 FBgn0035102 FBtr0072537 3 1 1 60 3L 175275 175293 ACAAGTCCTACTGCTACAG 58 175233 175252 GAACTGTCTTCTGTGTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me18S-G393 FBgn0086030 FBtr0114306 1 1 1 79 2R 20516233 20516251 TTAATGTGGCTCCCTTTCC 59 20516172 20516190 ACACTTATGATGTCCTGCA 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2765 FBgn0035087 FBtr0113119,FBtr0113118,FBtr0072408 3 3 3 212 2R 20849156 20849174 TATGGACGACACCATACTG 58 20848860 20848879 GAGTTCAGCATGTTGTACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3760 FBgn0022343 FBtr0072391,FBtr0072392 2 2 2 124 2R 20826705 20826723 TCCAAGACCTACGTTTCAC 59 20826863 20826882 AACTCGGTATTGGTGATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3579 FBgn0035037 FBtr0072318 2 1 1 124 2R 20495515 20495533 TTCCAGTACTACCACTTCG 58 20495679 20495697 AGCAAATTACATACCAGGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG4692 FBgn0035032 FBtr0072340,FBtr0072339 1 2 2 60 2R 20486728 20486748 GCAACAGATTCTACACTTTCC 59 20486688 20486709 TATAGTTTAGTGGTGATTGCCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13587 FBgn0035031 FBtr0072314 2 1 1 137 2R 20486315 20486333 CTTTCTTTACAGAGCCTGG 57 20486499 20486517 ATTTCGCAGATAAAGGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG30166 FBgn0050166 FBtr0072358 1 1 1 223 2R 20313467 20313485 CAATCTAACACTGCCAACG 59 20313262 20313280 ATATAAATGGTCCTGGCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Chi FBgn0013764 FBtr0072192,FBtr0072191 2 2 2 80 2R 19920383 19920401 CTTTGAGCTAAACAAGCGG 59 19920321 19920339 AAGAACTCCGTGGTAAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ken FBgn0011236 FBtr0072129 2 1 1 86 2R 19762610 19762684 TTGATAAGGAACCTGCTGG 59 19762732 19762752 CTTAAAGTAGGTGGCATTCAC 58 NA Drosophila melanogaster 50 pita FBgn0034878 FBtr0072113,FBtr0072112 2 2 2 60 2R 19436869 19436888 TTGAAGACATGGACAATGTG 58 19436828 19436848 GCATCGTCTTCTAAGTATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30193 FBgn0050193 FBtr0113364 1 1 7 120 2R 18817485 18817503 TGAGGCCAAGAAATCAGAC 59 18817586 18817724 ATGTTGTAGTTGAAATCGCC 58 NA Nonspecific, InUTR Drosophila melanogaster 50 CG13530 FBgn0034777 FBtr0071915 2 1 1 113 2R 18664520 18664538 CTACTCAACAGGTGAGTGC 59 18664084 18664443 TTTCGCAGATCATTTGGTG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG13512 FBgn0034760 FBtr0071864 1 1 2 86 2R 18548329 18548347 TCAACTTACTGTATGGCGG 59 18548604 18548622 CTTGTAGCAACAGTTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pgc FBgn0016053 FBtr0112520,FBtr0112519 2 2 2 79 2R 18219710 18219729 CTACCAGATGGAGTACTCCT 59 18219771 18219789 ATCCATTGTCGTAGGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 comr FBgn0034667 FBtr0071735 1 1 1 60 2R 17752645 17752663 GATTCGCAATACGATGACC 58 17752603 17752622 CGTCGAAGTAATCCTCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LBR FBgn0034657 FBtr0071713,FBtr0071711,FBtr0071712 2 3 3 60 2R 17609736 17609757 GTGAAGAGGATATTGATGAGGA 59 17609777 17609796 ACATTGAAACTACGGAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10306 FBgn0034654 FBtr0071670 2 1 1 77 2R 17573048 17573066 GTCCTATGTGCAGGATCAG 59 17573107 17573125 AACTGGTACAGTTTCAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10080 FBgn0034641 FBtr0071658 1 1 1 80 2R 17514582 17514666 CTGTACAATGTCATTTCCGT 58 17514707 17514727 GTCTTCGTTGAAATCAGAGTC 58 NA Drosophila melanogaster 50 RpL29 FBgn0016726 FBtr0071593,FBtr0071594,FBtr0071592 2 3 3 137 2R 17181657 17181744 CACTCTGGGTATGGATGTG 59 17181844 17181863 TACAGAGTAACAGGCTTTGG 59 NA Drosophila melanogaster 50 CG4030 FBgn0034585 FBtr0071640 2 1 1 173 2R 16976492 16976573 CTCAAACGCTTCAGATGTC 58 16976337 16976355 TCGTTAGACACTTATCGCA 58 NA Drosophila melanogaster 50 Pros29 FBgn0003150 FBtr0071522 2 1 1 64 2R 16882760 16882778 AAACAAATTGCTGGACAGC 59 16882806 16882961 AGACCATGTTGTCGTTCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG11159 FBgn0034539 FBtr0086248 2 1 1 129 2R 16543722 16543741 ACATCCAAATCTATGCAGCT 59 16543481 16543578 CGTTAAGGAACTCTTCGCA 59 NA Drosophila melanogaster 50 CG18367 FBgn0034460 FBtr0086469 1 1 1 60 2R 15524252 15524270 TTCAAGAAGCAGTTCAGCA 59 15524294 15524312 TCAGCCATGACTTGATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16716 FBgn0034459 FBtr0086467 2 1 1 73 2R 15484048 15484067 TAAATGAAACAAGGCTCAGG 58 15484160 15484178 TCGTTCTTCGTTAGGTGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15121 FBgn0034456 FBtr0086465 1 1 1 60 2R 15396673 15396694 CTCACTGAACAAGTTCATTCTG 59 15396715 15396733 CTCTTCCCAGTAGTTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ena FBgn0000578 FBtr0086583,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582 3 5 6 115 2R 15048910 15048988 CCATTCTCAAGGTCAATGG 58 15049064 15049085 GTTCTTGACTTTCTGAATCTCC 58 NA Drosophila melanogaster 50 Jheh3 FBgn0034406 FBtr0086622 1 1 1 97 2R 14748811 14748829 AAACATCACGGATTACGCT 59 14748664 14748682 TTTCAGCGGCATTAAATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15084 FBgn0034402 FBtr0086619 3 1 1 68 2R 14739213 14739231 CAACAGTCACCACATTTGG 59 14739263 14739281 GATCCTGTACTTGGAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15097 FBgn0034396 FBtr0086631 1 1 2 103 2R 14713006 14713024 ACCAGATGAGGAACAATGC 59 14712225 14712243 GAAATAGGGCGATACGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)03709 FBgn0010551 FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616 1 6 6 191 2R 14707870 14707888 GATGATCAACATCTCGCTG 58 14708043 14708123 ATGAGTAGGGATACCTGCT 59 NA Drosophila melanogaster 50 CG33998 FBgn0053998 FBtr0100053 2 1 1 60 2R 14626320 14626339 CTATGCGTATCTAACTGCTG 57 14626361 14626380 ACTCTTCAAGTGGATCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15073 FBgn0034379 FBtr0086607 2 1 1 80 2R 14594783 14594863 TCTATGTGAGAGGAGATTTCC 58 14594905 14594923 CACATGGTACCATAGTTGC 58 NA Drosophila melanogaster 50 CG15067 FBgn0034331 FBtr0086728 2 1 1 109 2R 14272831 14272849 CAAGCTCGAGATCATCTCC 59 14272740 14272758 GTATTGAGTTCCTCCAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 inaC FBgn0004784 FBtr0087047 1 1 1 80 2R 12788515 12788593 GGATATAATAACGAGCTTCCTG 58 12788634 12788652 GTGGTAATCTCCTGTCTGG 59 NA Drosophila melanogaster 50 RpS15 FBgn0034138 FBtr0087124,FBtr0087123 3 2 2 101 2R 12458181 12458199 AACATGATCATCGTACCCG 59 12457857 12457875 GTAGTGACCGATCATCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Syn2 FBgn0034135 FBtr0087095,FBtr0087096 2 2 5 119 2R 12442744 12443115 TCCTTCAGAAACAACTACCTC 59 12443196 12443214 TGACACCTGTGGAAATTCC 59 NA Drosophila melanogaster 50 mRpL34 FBgn0083983 FBtr0111011 1 1 1 70 2R 11986724 11986742 GGAATGCTAGGATGTCGAC 59 11986776 11986794 ATTGTGACGTCCTTTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11808 FBgn0034000 FBtr0087366 2 1 1 69 2R 11104311 11104329 CAATGAAACGGTCACAGTC 59 11104359 11104380 CGGATGGAATATTACATCTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS23 FBgn0033912 FBtr0087575 2 1 1 136 2R 10103500 10103518 CAGATGGAAGGCTAATCCC 59 10103134 10103152 TCTTGCCGTTCTTGATGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13337 FBgn0033863 FBtr0087626 3 1 1 60 2R 9553890 9553909 CACTATTCAAGATCTCACGG 57 9553932 9553950 CACTTCTTTAGAGGCTTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cnn FBgn0013765 FBtr0100656,FBtr0087704 3 2 5 139 2R 9334702 9334722 CGATCTACCTCACTAAATCAC 57 9332634 9333061 AAACTGGCATATGAGTTCTC 57 NA Drosophila melanogaster 50 CG13323 FBgn0033788 FBtr0087797 2 1 1 60 2R 8934623 8934642 GCAATAACAACGACTACCTG 58 8934582 8934600 TTGTTCTTGATCGGATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30053 FBgn0050053 FBtr0087873 1 1 1 60 2R 8577005 8577023 ATTGCGATCTCTGTGAAGG 59 8576907 8576926 GAGGAGTAGCTTACATTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sin3A FBgn0022764 FBtr0087887,FBtr0087889,FBtr0087890,FBtr0087888 1 4 4 81 2R 8467283 8467301 CTCGAATACGTTCGAGGAC 59 8467118 8467238 GGAGACAACCTTATCCAGC 59 NA Drosophila melanogaster 50 Cpr49Ac FBgn0033725 FBtr0087917,FBtr0087916 1 2 2 88 2R 8276584 8276771 GATCACTCTTACCTGACTGAG 59 8276821 8276839 TAGAATCCCTTGGCATGTG 59 NA Drosophila melanogaster 50 CG13168 FBgn0033705 FBtr0087998,FBtr0087999 1 2 2 97 2R 8142680 8142698 ATGACCAAGAAGCATCTGG 59 8142809 8142829 CTGGTATCGTACTTCTTAAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG8858 FBgn0033698 FBtr0088008 1 1 1 112 2R 8083928 8084002 CAAGAGAAGTGAATCCAATCTC 58 8083837 8083855 CTTTCAAAGTGTTGCCCAG 59 NA Drosophila melanogaster 50 128up FBgn0010339 FBtr0087976 3 1 1 107 2R 7926105 7926189 GGAATTTAAATATGCGCTGG 57 7926259 7926277 TTCTTCACAATCTGGACCA 58 NA Nonspecific Drosophila melanogaster 50 CG30025 FBgn0050025 FBtr0088158 1 1 1 62 2R 7241547 7241565 CTCCTTCAAGAACCACGAG 59 7241503 7241521 TTGATGATGGCAATGTCGT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9067 FBgn0033605 FBtr0088182 1 1 1 80 2R 7166602 7166620 ATCTCCACTTGCTCTACAC 58 7166476 7166561 GATCGAACTTCTTTGAAGTCAG 59 NA Drosophila melanogaster 50 Cpr47Ea FBgn0033597 FBtr0088190 1 1 1 98 2R 7139895 7139913 TGGCTATTTGAAGAACCCG 59 7139729 7139747 TAGGTGATGGTGTAGACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG12343 FBgn0033556 FBtr0088247 1 1 1 60 2R 6710208 6710226 CAGGAGGATCTACAACGAC 59 6710166 6710185 GAACTTGGAATTCCTCTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0089355 3 1 26 157 2R 6419569 6419587 ACTTGGACTAATGGCACAG 59 6389556 6389872 TTAGTTTGTCTGAGGGCTC 58 NA Drosophila melanogaster 50 Caf1-105 FBgn0033526 FBtr0088310 1 1 1 60 2R 6355923 6355941 AAGATACCCGAGATTTCGT 58 6355881 6355900 TTTGCTGTATATCCACACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12907 FBgn0033511 FBtr0088351 1 1 1 62 2R 6241426 6241444 AAACGGACATGTCAAGGAG 59 6241467 6241488 GAAACGATATGGATTCGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CAP FBgn0033504 FBtr0088342,FBtr0088347,FBtr0088341,FBtr0088344,FBtr0088338,FBtr0088345,FBtr0088340,FBtr0088343,FBtr0088339,FBtr0088346 1 10 10 83 2R 6192541 6192559 TGATGCCAACTGGTATGAG 59 6192605 6192993 CCATCTCGACTGACAATCTC 59 NA Drosophila melanogaster 50 Jra FBgn0001291 FBtr0088410 3 1 2 183 2R 5984066 5984084 ATAATGGATCCGTCTGGAC 58 5984639 5984761 GCAATGACGTCAATCAGTG 59 NA InUTR Drosophila melanogaster 50 egr FBgn0033483 FBtr0088405,FBtr0088406 1 2 2 103 2R 5970991 5971089 AAGTATGGGCTACCATGGA 59 5971156 5971174 TATTGGTCACCGTCAAGAC 59 NA Drosophila melanogaster 50 CG12744 FBgn0033459 FBtr0088378 3 1 2 104 2R 5763457 5763531 TTCAATCCGAATCTCTGGC 59 5763596 5763617 CGCATAAGACTCAATAAATCGG 59 NA InUTR Drosophila melanogaster 50 Pdk FBgn0017558 FBtr0112892 1 1 2 82 2R 5320667 5320687 GATCTTCAACAAGACAAGCTC 59 5320731 5321874 CGTTCATATCGGAGCTCTG 59 NA Drosophila melanogaster 50 CG30344 FBgn0050344 FBtr0088583 1 1 1 83 2R 5034538 5034624 AAGAAGGCTCTGAGAATGG 58 5034671 5034689 ATAGATATAACCGCTGGCC 58 NA Drosophila melanogaster 50 sns FBgn0024189 FBtr0111043,FBtr0088635 3 2 2 83 2R 4718009 4718027 TATCATCTGTGACTCGAGC 58 4718073 4718387 TTATTAATGCCTTCGATGGG 57 NA Drosophila melanogaster 50 Jon44E FBgn0001285 FBtr0088704 3 1 1 108 2R 4579239 4579257 ATGTGCTCATCTACTTCGG 59 4579329 4579347 TTGTTCAGGAAGTCGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 3 9 9 95 2R 4568140 4568158 ATGAGCAGATCAAGACCTG 59 4568217 4568298 TATCACGGTAGTCCATGAC 58 NA Drosophila melanogaster 50 Pabp2 FBgn0005648 FBtr0088786,FBtr0088785 3 2 2 185 2R 4020283 4020454 GGCGTCAAATAAAGGTAATGTC 59 4020663 4020683 AGTAAGGAGCGTAGTAATTGG 59 NA Drosophila melanogaster 50 nito FBgn0027548 FBtr0088857,FBtr0088858 2 2 2 123 2R 3850891 3850967 GAATATAGACCACGCGGTC 59 3851054 3851072 GATCGTAGGGATCAATCGG 59 NA Drosophila melanogaster 50 Dgk FBgn0085390 FBtr0112581,FBtr0112580 2 2 4 80 2R 3738268 3738288 CCATTGTTAACCAGATGATGG 59 3736488 3738226 TCATCTCTTGCAGTATCGG 58 NA Drosophila melanogaster 50 phr FBgn0003082 FBtr0088839,FBtr0088838 2 2 2 60 2R 3713282 3713301 CAGTTTCTTACCCACTTGGA 59 3713324 3713342 AGAACTCCTGTATGTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpld FBgn0015930 FBtr0088985,FBtr0088987,FBtr0088986 1 3 3 119 2R 3371061 3371161 TATGTGGGATATCGAGGTG 57 3370960 3370978 TCAATGAGGAACACAATGC 58 NA Drosophila melanogaster 50 so FBgn0003460 FBtr0088970 1 1 1 92 2R 3312437 3312455 AATACAAGGAGCTGTACCG 59 3312511 3312666 CATAATGCGCTTTCAACCA 59 NA Drosophila melanogaster 50 CG3287 FBgn0028954 FBtr0086157 1 1 2 148 2R 2699449 2699467 TACCAGATAGAAACGCGTC 59 2699578 2700294 ATTATCGTTTGCACATTGGG 59 NA Nonspecific Drosophila melanogaster 50 CG9436 FBgn0033101 FBtr0086134 2 1 1 62 2R 2645948 2645967 GGTTTGGAATACGTAGACCT 59 2645905 2645923 GTCATTGTGGAACTTCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)01289 FBgn0010482 FBtr0110900 2 1 4 115 2R 2611427 2611445 ATTCGTTAAGACCAGGGAC 58 2611124 2611348 CAATCGAACCAGAGTCCTC 59 NA Drosophila melanogaster 50 Nipped-B FBgn0026401 FBtr0111119,FBtr0111118 2 2 2 80 2R 580450 580531 TAATTAGAGGTTATGCGAGTCG 59 580391 580412 TAGTGCGAAGAAGTGTATACAG 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-525i FBgn0083030 FBtr0113553 1 1 1 60 2L 20421686 20421705 AAATAGACAATCGGCATCCT 59 20421727 20421746 ACACAAACACAAGTCATCTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 snRNA:U4:39B FBgn0003930 FBtr0081489 3 1 1 86 2L 21215134 21215152 CCAATGAAGTCCTCCTGAG 59 21215066 21215084 TAGTGGACGGTATTTCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycK FBgn0025674 FBtr0085942,FBtr0085941 1 2 2 60 2L 22129184 22129204 AGCACAGTAGTTTGTCTACAG 59 22129144 22129162 CCAAATGGATAAGAGCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10722 FBgn0032848 FBtr0081335,FBtr0081334 2 2 2 195 2L 20095929 20096010 GAACTTCAGCGTTACAACG 59 20096166 20096187 ACTATGTGTACACAATGTACCC 59 NA InUTR Drosophila melanogaster 50 CG10680 FBgn0032836 FBtr0081303 1 1 1 162 2L 19964562 19964581 ACGATGTCGAGTTTCTAGAG 58 19964768 19964850 TAGTTGGGTTGACGAATGG 59 NA Drosophila melanogaster 50 Hs2st FBgn0024230 FBtr0081288 2 1 1 109 2L 19443926 19443944 AATTTAGTCCGCAAGAAGG 57 19443775 19443793 CAGAAGAAGGGTATCTGCA 58 NA DesignNoJunction Drosophila melanogaster 50 CadN FBgn0015609 FBtr0100316,FBtr0100313,FBtr0081020,FBtr0081016,FBtr0081013,FBtr0081015 3 6 12 102 2L 17651479 17655676 CATACTGATACTCGTCTTGGT 59 17651397 17651415 GTTGATGATATTCTCGCGC 59 NA Drosophila melanogaster 50 CG6012 FBgn0032615 FBtr0080923 1 1 1 214 2L 16861180 16861198 CAATGTGGTCCTAATCGCT 59 16860564 16860582 ATTTCAGCAAGGATTTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 mdy FBgn0004797 FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917 2 4 4 87 2L 16820785 16820804 CATAACGCCCTAATCCTGAG 59 16820919 16825419 CAATTATTTCCATGGCTAGACC 59 NA Drosophila melanogaster 50 Idgf3 FBgn0020414 FBtr0080864,FBtr0080862,FBtr0080863 2 3 3 91 2L 16451847 16451865 TGATCAAGGATTTGAGTGC 57 16451920 16452204 ATCATAGTACCAGCTGGAG 57 NA Drosophila melanogaster 50 CG5869 FBgn0028894 FBtr0080851 3 1 1 97 2L 16302195 16302268 ATAGCCAGATCGAATTGCA 59 16302116 16302134 GTCTAGTTCGCGTATCTCG 59 NA Drosophila melanogaster 50 pkaap FBgn0040079 FBtr0080826 1 1 1 80 2L 16290139 16290157 TCGCTGACTTTCTAAAGTC 57 16290199 16290288 GATGAGTGGTGGAATTATCTC 57 NA Drosophila melanogaster 50 CG18507 FBgn0028527 FBtr0080528,FBtr0080527 3 2 2 137 2L 13668242 13668260 CATCAGCATAATGGAGGTG 57 13668697 13668715 AAGTGTGACAATCACATCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33645 FBgn0053645 FBtr0091622 3 1 1 60 2L 13532977 13532995 GACAATCGCACCTATATGG 57 13533018 13533037 CGGTAATATCGTCAACTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nnp-1 FBgn0022069 FBtr0080473 1 1 1 60 2L 13365041 13365059 TTTAACAGCAAGAGACGCA 59 13364999 13365020 TCTGGTAAGTCTCAAAGATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5792 FBgn0032455 FBtr0089908,FBtr0089907 1 2 2 140 2L 12713556 12713574 GAGTTCAGTCTCCTTGTCG 59 12713367 12713452 ATGAAGCATCTTGGTGGTC 59 NA Drosophila melanogaster 50 RpL9 FBgn0015756 FBtr0080163,FBtr0080164 1 2 2 101 2L 11003232 11003522 ACATGATCAAGGGAGTCAC 58 11003149 11003167 CAATGACCGTGTTGTTCTC 59 NA Drosophila melanogaster 50 SCAR FBgn0041781 FBtr0080148 2 1 1 89 2L 10981421 10981500 TCGAGATGGTATTACTCTACGT 59 10981550 10981568 AAGATTGAAGCCACATCCA 59 NA Drosophila melanogaster 50 Myo31DF FBgn0086347 FBtr0080035,FBtr0080036 3 2 2 102 2L 10494502 10494521 CTGGATATTTACGGCTTCGA 59 10494359 10494440 GCACCAGTTCTATGAATAACTG 59 NA Drosophila melanogaster 50 CG33303 FBgn0053303 FBtr0080052 1 1 1 60 2L 10374454 10374472 CAATTTGGTCGAAAGCCAC 59 10374412 10374430 AGAAGTCTTCGAGAAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31720 FBgn0051720 FBtr0113413,FBtr0089788 3 2 2 73 2L 10236397 10236415 ATACTCAGTACTGCGTGGA 59 10236224 10236242 CATCTTGAAGCGAATCCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5708 FBgn0032196 FBtr0079956,FBtr0079955 1 2 2 80 2L 10225002 10225021 GCGTATTTCATCTAAGGTGC 59 10224876 10224965 CTCCTAACATAGTATACCTATCACC 59 NA Drosophila melanogaster 50 CG34159 FBgn0085188 FBtr0112350 3 1 1 179 2L 10203534 10203553 GATACAATAACCACAGTGCC 58 10203023 10203392 GTTCGTAGACCTTGATCCA 58 NA Drosophila melanogaster 50 CG13392 FBgn0032033 FBtr0079720 1 1 1 60 2L 8382147 8382165 GAAGTGTTTCTGTTGTGGC 59 8382105 8382123 TTAAGGTTCCTAAGGCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pvf3 FBgn0085407 FBtr0112611 1 1 3 80 2L 7155493 7155513 CCTCTCATAAGGAACATTGAG 57 7107537 7118888 AATGTTCTCCACATCATGG 57 NA Drosophila melanogaster 50 Pvf3 FBgn0085407 FBtr0112612,FBtr0112613 2 2 3 101 2L 7133057 7133075 ATCTCACACCAAGGAACTG 59 7132974 7132992 TCGTTGTAGTGTAGTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11289 FBgn0031887 FBtr0079404 1 1 1 60 2L 7069185 7069206 CGATCAACGAGATAATCTTCAG 58 7069227 7069245 GGTGGATAAGGTCAAACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18304 FBgn0031869 FBtr0079367 3 1 1 84 2L 6934897 6934997 AAGGAACAATTACAGAGCAC 58 6934832 6934850 GATTCTTCACCTGTTGCTC 58 NA Drosophila melanogaster 50 CG9511 FBgn0031810 FBtr0113025 1 1 2 94 2L 6408281 6408299 GATACTGGAAGTGAAGGCA 58 6407521 6407541 GGGTATTTAAAGTGGGAAAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13983 FBgn0031792 FBtr0079285 3 1 1 60 2L 6264175 6264194 ATCAGGAATCGGATAGACAC 58 6264134 6264152 GGGTAGTACGGGTAGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lid FBgn0031759 FBtr0079231,FBtr0079232 2 2 2 82 2L 5993336 5993482 GTATCAATAAGGTGCGAACTC 58 5993274 5993292 GAACAACTCTAGCTCCTCC 59 NA Drosophila melanogaster 50 CG11029 FBgn0031735 FBtr0079136 2 1 1 93 2L 5746739 5746757 GACATGATCAACGAGTTCC 58 5746814 5746832 AGATCTTCAGGATGTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8892 FBgn0031664 FBtr0079045,FBtr0079046 1 2 2 60 2L 4980310 4980329 TATTCTTCCCGATTTGAGGC 59 4980269 4980289 TGCATCCTCCTGAATAAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL27A FBgn0010410 FBtr0077452 2 1 1 85 2L 4457497 4457748 GTTAAATTCGGCTACTACAAGC 59 4457433 4457453 TTCTTAGAGAAGTACTTGGCC 59 NA Drosophila melanogaster 50 CG10039 FBgn0031581 FBtr0077507 3 1 1 63 2L 4007885 4007906 CACCACTACTACATTTGTACCA 59 4008771 4008789 ATTCGCGTAGTAGAGAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pgant4 FBgn0051956 FBtr0114524,FBtr0077523 3 2 2 60 2L 3473690 3473773 GTCAACTACAATTGGCTGC 59 3473795 3473815 TGGAGATCTTGGGATTAATGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3523 FBgn0027571 FBtr0077659 2 1 1 81 2L 3067046 3067064 CACATGGGAGGAGAAACTC 59 3067107 3067195 GGATTTCTTGATCGTTTCCAC 59 NA Drosophila melanogaster 50 Hrs FBgn0031450 FBtr0089751,FBtr0089750 3 2 3 168 2L 2740460 2740524 CAGAAAGATGTCACTCCCA 58 2740656 2740674 TGAACATCTCGCAGTTCTC 59 NA DesignRelaxed Drosophila melanogaster 50 Gr23a FBgn0041248 FBtr0077702 3 1 2 184 2L 2671790 2671866 CAAAGCTATAATCTAGGCCG 57 2672012 2672086 GCTGCAAACATACTACTCAG 58 NA Drosophila melanogaster 50 Gr23a FBgn0041248 FBtr0077701 3 1 2 300 2L 2670562 2670580 CCTACTGGATGATCATGGG 58 2672012 2672086 GCTGCAAACATACTACTCAG 58 NA DesignRelaxed Drosophila melanogaster 50 p16-ARC FBgn0031437 FBtr0077694 3 1 1 101 2L 2580477 2580495 GATGAGAGCGAGATTACGA 58 2580560 2580578 CACATTCTGGTTCTTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 oaf FBgn0011818 FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780 1 4 4 103 2L 2495396 2495415 GTATTACCTCCAACATTGGC 58 2495481 2495581 GATTTGAACCTCATTGCGA 58 NA Drosophila melanogaster 50 CG15358 FBgn0031373 FBtr0077892 1 1 1 60 2L 1882852 1882870 CTGGATAGACTGGAAAGCC 59 1882810 1882828 TCCTATCGAACTTGGAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31937 FBgn0031360 FBtr0077884 1 1 1 69 2L 1730318 1730336 ATCTCGACGAGCATAAGAC 58 1730369 1730387 TTGACAAGGACATCCAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18131 FBgn0031343 FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934 2 4 6 63 2L 1500147 1500167 GCCAGCTTATATCTAATGACC 58 1500036 1500123 GATATGTTGACTTGAGTGGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG4297 FBgn0031258 FBtr0078085 2 1 2 125 2L 462391 462409 AAATCGATGGTTCCGAGAG 59 462029 462047 TCTTCATCAGGATGGATCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11592 FBgn0025686 FBtr0078134 3 1 1 60 2L 287984 288005 CCATAAATATAGTGAACGGAGC 58 287945 287964 CTTGTTCCAATTGTGTTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 net FBgn0002931 FBtr0078162 3 1 1 60 2L 84053 84072 GACTCCCAACTCTAAATCCA 58 84012 84030 ACCAGTTGCATTCATACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-3436b FBgn0086602 FBtr0091803 2 1 1 119 X 6636491 6636509 AACTAGGTGGTTATCCTCC 57 6636390 6636408 CAAGGTTCAGGTAGAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 roX1 FBgn0019661 FBtr0070635 1 1 2 60 X 3755981 3756070 CTAAGTGGAAACTTCTCGTG 58 3755940 3755959 TAGGTCACCCTATCAGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mst FBgn0020272 FBtr0077211 2 1 1 147 X 21260878 21260897 CCAGGATCACTAGTTATCCC 58 21261065 21261084 TTATTGTTTCGCCAGATGGT 59 NA DesignNoJunction Drosophila melanogaster 50 Obp19b FBgn0031110 FBtr0077302 1 1 1 171 X 20288157 20288175 GATCAACATGATGTTCCCG 58 20288680 20288698 TCATTCCTTGATCTCGGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG17068 FBgn0031098 FBtr0077341 3 1 1 60 X 20120119 20120139 ACCAGATCTACAAGATCTACG 58 20120079 20120097 CAGGAGTACATGGGATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14227 FBgn0031058 FBtr0074755 1 1 1 104 X 19582287 19582373 AGTATTCAGACTTCGTGCG 59 19582201 19582219 GAAAGTCTTCTGCAGTGGT 59 NA Drosophila melanogaster 50 CG7326 FBgn0030970 FBtr0074653 1 1 1 60 X 18756516 18756534 TGAGAACGAGGATCAACAC 59 18756474 18756495 CATTTGATCCGTAAACACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13008 FBgn0030780 FBtr0074323 3 1 2 92 X 16606046 16607821 GTAAATTCAAGGCGTCAGC 59 16607877 16607895 AGGATTCCCTAGAGTGGTG 59 NA Drosophila melanogaster 50 vap FBgn0003969 FBtr0074141,FBtr0074143,FBtr0074142,FBtr0074140 2 4 4 81 X 15894965 15894983 ACGATCTTTGGTCATGGTC 59 15894837 15894921 CTCCATGTATTGTTCCTTGC 58 NA Drosophila melanogaster 50 CG8952 FBgn0030688 FBtr0074193 1 1 1 66 X 15660250 15660343 AGATAATCGCATAGTGTCCG 59 15660203 15660221 CTTCAGTATGACCTGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9240 FBgn0030669 FBtr0074060 3 1 1 68 X 15594658 15594676 TGATCAGGTGCTAATCCAG 58 15594608 15594627 TTCTTGTCATCCGAATTACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 acj6 FBgn0000028 FBtr0074015,FBtr0100328 2 2 4 101 X 15271607 15272223 CTATTCACATCTCATCATCCTG 58 15265712 15266194 AGATATCACCATTCTGACGT 58 NA Drosophila melanogaster 50 CG9072 FBgn0030614 FBtr0074029 3 1 1 61 X 14989856 14989875 GAGCAACTGATTGTCTATCG 58 14989814 14989834 TCATAGTGATCCTTCTGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1368 FBgn0030539 FBtr0073891 2 1 1 62 X 14069543 14069562 CTACGTCTACAGGAAGTAGG 58 14069587 14069605 GACACTGTTTCGTGTTCAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG15753 FBgn0030491 FBtr0073781 1 1 1 159 X 13415076 13415094 TATGACGCAAACAAGTCTC 57 13416787 13416805 GTTGACAAACAGCGATTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34411 FBgn0085440 FBtr0112679 2 1 1 80 X 13061675 13064064 ATTGAGTATTCTGGACCTTCG 59 13061615 13061633 ACCTCCAAATTCGGTAGTC 58 NA Drosophila melanogaster 50 CG1837 FBgn0030329 FBtr0073551 2 1 1 96 X 11612713 11612731 GGTTGACCTTACCGAAGAC 59 11612791 11612870 CAAACGCTGACAATGACTG 59 NA DesignNoJunction Drosophila melanogaster 50 bif FBgn0014133 FBtr0073527,FBtr0073526 3 2 2 140 X 11575137 11575759 TGCAATTGCAGATTTCACAG 59 11575862 11575880 ACAACAGAGTGATGACCTC 58 NA Drosophila melanogaster 50 Tim8 FBgn0027359 FBtr0073482 2 1 1 140 X 11262534 11262555 GGTCAATTTGTAGATTGCTCAC 59 11262656 11262752 CGTTGAACTCGTGTATCTG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG2972 FBgn0030177 FBtr0071430 2 1 1 73 X 9977537 9977555 CATTAAACACTGCGTGGAG 59 9977592 9977610 TCACTTTCAGATCGATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14431 FBgn0029922 FBtr0071002 3 1 1 82 X 6858226 6858245 CTCCATCATCGATATCGAGC 59 6858776 6858794 ATGAGGAAGATGTCTGTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4542 FBgn0029906 FBtr0070970 1 1 1 101 X 6716154 6716235 GTGCCAAGAAACAAAGTCC 59 6716300 6716318 TTAAGATGGCCTTCTCGTG 59 NA Drosophila melanogaster 50 Spx FBgn0015818 FBtr0070894 2 1 1 99 X 6149975 6150067 AAGATGCCACCATCTATGC 59 6150130 6150206 ATGTGTACGTTCACCACTG 59 NA DesignRelaxed Drosophila melanogaster 50 vanin-like FBgn0040069 FBtr0070879 1 1 1 80 X 6094738 6094756 CTGCAAGATAGTTTGCTGC 59 6094613 6094695 TTGGACATAGCTATCTTCCG 58 NA Drosophila melanogaster 50 CG15770 FBgn0029803 FBtr0070811 2 1 1 60 X 5659602 5659621 GATAATACCGATGACGACGA 59 5659643 5659662 AATATAAACCTGCAAGGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4119 FBgn0028474 FBtr0070799 1 1 1 90 X 5560824 5561254 GAATTTGACGGACCTATTGC 59 5561307 5561325 CATCTACCTTGGCTACCAG 59 NA Drosophila melanogaster 50 CG12688 FBgn0029707 FBtr0070653 1 1 1 63 X 4275989 4277077 AAGAAGATCCAAGCATCCC 59 4277104 4277122 GAGTGTCCTCTAAGTCCTG 58 NA DesignNoJunction Drosophila melanogaster 50 fd3F FBgn0061173 FBtr0070602 2 1 1 114 X 3704156 3704257 GATGTCCTGTTGGATAATGAC 58 3704333 3704351 TTTGGTTGTTATTGCCTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG3630 FBgn0023540 FBtr0070385 1 1 1 180 X 2065005 2065023 AACATCCACGTGATGAAGG 59 2065236 2065254 CTACCAACTTGTGTTTGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3600 FBgn0026087 FBtr0070322 3 1 1 215 X 1887551 1887569 TGACCATTATCAAGACGCC 59 1887748 1887766 GTTCATTGCTATTTCCGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14804 FBgn0014411 FBtr0070311 3 1 1 65 X 1768501 1768520 ATTCAAGTGTCTAGCGAAGG 59 1768547 1768566 AATGGATAGCTGTTGTTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14814 FBgn0023515 FBtr0070370 1 1 2 96 X 1758265 1758283 ATATTCAAGCAACAGCGGT 59 1758125 1758208 CGCAGAGGTTTAGTAAATATGC 59 NA Drosophila melanogaster 50 CG11418 FBgn0024360 FBtr0070236 1 1 2 92 X 1240148 1242267 CCATGAGTAACCTCACTGG 59 1240074 1240092 GAATGGTAAAGGTCAACGG 58 NA Drosophila melanogaster 50 CG40947 FBgn0085540 FBtr0113953 1 1 1 122 U 8131646 8131664 TTCAGGACTCATTCAACCG 59 8131542 8131560 GAATCATGCCGTACTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33978 FBgn0053978 FBtr0100021 2 1 1 82 4 185016 185101 TCACTTTCTCAAAGACTCCA 58 184953 184971 CTGTCCTCGATCAATTGTG 58 NA Drosophila melanogaster 50 tRNA:CR31485:Psi FBgn0051485 FBtr0081662 2 1 1 61 3R 2645041 2645060 GCTTGAATAGCTTAGTTGGT 57 2644999 2645017 GAACTTGAACCGTGTACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snRNA:U1:95Cc FBgn0004187 FBtr0084487 1 1 1 77 3R 19652076 19652094 TTAACCGTGATCACGAAGG 59 19652135 19652153 TAATCGCAGAGGTCAACTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 sip3 FBgn0039875 FBtr0085842 3 1 1 99 3R 27598368 27598386 GGTCTACATCACCAAATCG 57 27598511 27598584 CAGGAAGATCTTGCTTAGC 57 NA Drosophila melanogaster 50 CG2135 FBgn0039874 FBtr0085858 1 1 1 151 3R 27595741 27595759 CTTGGTATCAGAACTCGGG 59 27595554 27595626 AATAAAGGCGGGAAGTGAG 59 NA Drosophila melanogaster 50 CG11317 FBgn0039816 FBtr0085741 3 1 1 160 3R 26917485 26917784 TGACTACGACGAATCACTC 58 26917220 26917238 CAAATTCCTCCTTGTGGTG 58 NA Drosophila melanogaster 50 CG2218 FBgn0039767 FBtr0085627 3 1 1 151 3R 26252986 26253004 GAGATAAGCGATCCCTACG 59 26252532 26252871 AAGATCATTAGCTCCCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tace FBgn0039734 FBtr0085551,FBtr0085550 2 2 2 125 3R 25826681 25826758 GCATATGGATCACGATAGCT 59 25826846 25826864 ATGTGATAGGTTTCCTCCG 58 NA Drosophila melanogaster 50 CG31036 FBgn0051036 FBtr0114571,FBtr0085501 1 2 2 80 3R 25736582 25736670 GCAGTCAACAGAAACTCCT 59 25736714 25736732 TTCGGTCCTCTCACTAGTC 59 NA Drosophila melanogaster 50 CG7593 FBgn0039687 FBtr0085461 3 1 1 171 3R 25550369 25550387 GTGGGACCCTATTACAAGC 59 25550160 25550235 AACAATACAGGACACAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11874 FBgn0039634 FBtr0085416 2 1 1 81 3R 24936985 24937088 GGATGATGAATTCAAGGAAGG 58 24936924 24936943 CTCGAATAGGTTTACATCGC 58 NA Drosophila melanogaster 50 CG33204 FBgn0053204 FBtr0089470 2 1 1 60 3R 24741086 24741105 CCATTAATTAGAGGAGTGGG 57 24741127 24742157 GATCTCTTCGATCGTCTAGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14526 FBgn0027578 FBtr0085331 1 1 1 60 3R 24710899 24710919 CAACATCCTGATAGAGAACAC 58 24710939 24710959 AATGTAGAAGGGTTGTAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spz FBgn0003495 FBtr0085143,FBtr0085139 1 2 12 93 3R 22892851 22892869 ATGATGAGGGAGTTGTCCT 59 22892193 22892339 AAGACAAAGGTATCCGATGG 59 NA Drosophila melanogaster 50 CG14242 FBgn0039443 FBtr0085034 3 1 1 112 3R 22462480 22462560 CTCCTTGTTGTTACTATGGAC 58 22462634 22462652 TAAAGTATTCCGTGGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 m1 FBgn0002578 FBtr0084957 1 1 1 60 3R 21840539 21840557 TGATGAGCCAAACTTTGAC 58 21840579 21840599 GTATTTCCGTATACACATGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14540 FBgn0039398 FBtr0084948 1 1 1 145 3R 21786302 21786388 GAACAAGTCATTAGCAAGGT 58 21786496 21786514 AGACTCAGCATTTCCTGAG 58 NA Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0113385,FBtr0084927 3 7 7 111 3R 21527327 21527346 TAACCAGGTCCACAAATCTG 59 21527166 21527253 GACATAGATGACGCTTGCT 59 NA Drosophila melanogaster 50 CG11902 FBgn0028647 FBtr0084831 2 1 1 80 3R 21161709 21161728 AAGTCGTATCATCTACGTCG 59 21161770 21161840 TTCAGATGGCTTACATTCCT 58 NA Drosophila melanogaster 50 CG10425 FBgn0039304 FBtr0084867 3 1 1 150 3R 21087199 21087281 CTTAAGGATGCCCTGAAGG 59 21087067 21087085 AGCTAACTATTCGCAGTGG 59 NA Drosophila melanogaster 50 CG6422 FBgn0039261 FBtr0113281,FBtr0084795,FBtr0084794 1 3 3 90 3R 20864033 20864153 TGAAGTCTCTGGCAATGAC 59 20863961 20863982 GTTCATATTGTTCCATGGAGTG 59 NA Drosophila melanogaster 50 CG3744 FBgn0039240 FBtr0084726,FBtr0084725,FBtr0084727 2 3 3 85 3R 20700371 20700443 GATACAATTCTGGGCTGCT 59 20700304 20700322 GTTCTGTGGACAAATCTGC 59 NA Drosophila melanogaster 50 crb FBgn0086905 FBtr0111008,FBtr0084603 1 2 2 80 3R 20135391 20135412 CTGCGAGATCAACATTAATGAG 59 20135452 20135536 GTATAGGTTCCAATCCCGTC 59 NA Drosophila melanogaster 50 Orct FBgn0019952 FBtr0084599 2 1 1 65 3R 20102833 20102854 GCAGTATCTATGAACTATCACC 57 20102880 20102898 AGGAGCACCTTTCATTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10365 FBgn0039109 FBtr0084447,FBtr0084448,FBtr0084446,FBtr0084449 1 4 4 107 3R 19554819 19554837 ATTCGAGGATATGTTCGCC 59 19555685 19556379 AGTGATTCCCTCTTTGTCC 58 NA Drosophila melanogaster 50 CG6688 FBgn0039038 FBtr0084343 3 1 1 110 3R 18839661 18839680 CTTGAGAGTGTCTGAAATCG 58 18839750 18839883 CAGCAGATGCTATTAGTATCAC 58 NA Drosophila melanogaster 50 CG31281 FBgn0051281 FBtr0084339 3 1 1 105 3R 18792273 18792359 TGCTAACATGAAGGACTCC 58 18792428 18792446 AGAAATTCTCTTCGACCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rumi FBgn0086253 FBtr0084320 3 1 1 107 3R 18576191 18576209 GTTTGGTAGGAACAGGAGG 59 18576052 18576121 TGAAGCTAAATTCATCCTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wfs1 FBgn0039003 FBtr0084334 2 1 2 124 3R 18515890 18515967 TGGAATCTGGAAGATCGTG 59 18515727 18515803 AGATTGGGCTCTACTATGGA 59 NA Drosophila melanogaster 50 Cby FBgn0067317 FBtr0084136 3 1 1 86 3R 17693874 17694045 CTTCAAGCAGTTGTTTGCA 59 17694095 17694113 CCTATATTGCAACGTCCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31177 FBgn0051177 FBtr0084129 2 1 1 132 3R 17586054 17586195 CAGCAATACCACTTGACCA 59 17586291 17586309 TCATGGGATAACCAACCTG 58 NA Drosophila melanogaster 50 CG17271 FBgn0038829 FBtr0110823 3 1 2 93 3R 16646431 16646449 ACTTCAAGATGCACGACTC 59 16645201 16646374 TCTCCACTATCCTTGACGT 59 NA Drosophila melanogaster 50 CG11447 FBgn0038737 FBtr0083815 2 1 1 62 3R 15687529 15687547 CATGATGAACTATCGCTGC 58 15687573 15687591 ATTCCGTATTTGTCGTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11779 FBgn0038683 FBtr0100548 1 1 4 118 3R 14977295 14977313 TTTAAACAAACCGCAGACG 59 14975339 14977213 AATCGTCGGAAGTATCCTC 58 NA Nonspecific, InUTR Drosophila melanogaster 50 CG5265 FBgn0038486 FBtr0083407 2 1 1 60 3R 12965372 12965390 AACAGTCAGTTTGGAAAGG 57 12965413 12965432 TATCGTCGGTAAACCTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14879 FBgn0038419 FBtr0083326 1 1 2 177 3R 12172999 12173110 TGAACATCTTCGACGAGTC 59 12172840 12172858 TTGACCTTCTGTACATCGC 59 NA Drosophila melanogaster 50 Sb FBgn0003319 FBtr0083250 1 1 1 170 3R 11965602 11966315 AGACACAGAAGAAGCACAC 59 11966447 11966467 GCAATTGACTACGATTAAGGC 59 NA Drosophila melanogaster 50 CG3303 FBgn0038381 FBtr0083200 2 1 1 80 3R 11734653 11734820 CCTAGAAACCTCTTTGAATTGC 59 11734860 11734879 AAAGAGCCTCATTAGCAGAG 59 NA Drosophila melanogaster 50 spn-E FBgn0003483 FBtr0083183 3 1 1 83 3R 11667898 11667916 ACAAAGCCTTTAAACGTCG 58 11667962 11668048 GTTGACGATGCAAGTAATCG 59 NA Drosophila melanogaster 50 CG6499 FBgn0038309 FBtr0113238 2 1 1 92 3R 11073838 11073911 ACCAGCTCCATCTATTCCT 59 11073764 11073782 CGTAATGGACACTAGGGAG 58 NA Drosophila melanogaster 50 Cyp313a1 FBgn0038236 FBtr0082954 2 1 1 96 3R 10347636 10347728 CTTCGAATCGCTCATATCTC 58 10347786 10347805 TCGTAACTTATCATAACCGC 57 NA Drosophila melanogaster 50 Aats-met FBgn0027083 FBtr0082895 3 1 1 116 3R 10084727 10084745 CTACGTCTGGTTAGATGCT 58 10084562 10084580 AACTTGAGGATGTCCTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9588 FBgn0038166 FBtr0082849 1 1 1 131 3R 9501449 9501531 GAAAGAGCTGGTCTCTGTG 59 9501336 9501354 TTTCAGCTGGACATTCTGG 59 NA Nonspecific Drosophila melanogaster 50 CheA87a FBgn0038142 FBtr0082749 1 1 1 60 3R 9195581 9195602 GATATCTCGATCTGAATCAACG 58 9195621 9195697 CTTGAAACCTTAAGCACAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HisCl1 FBgn0037950 FBtr0082471,FBtr0082472,FBtr0082470 3 3 3 81 3R 7614291 7614373 AGTACTCAACAGGTAACTTCAC 59 7614415 7614433 TAGGTGTGGAACAAATGGT 58 NA Drosophila melanogaster 50 CG17187 FBgn0037882 FBtr0082365 2 1 1 78 3R 7057294 7057312 ACAAGAATCCGGACAATCC 59 7057234 7057253 GATTCATCCGTGAGGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14694 FBgn0037845 FBtr0082298 1 1 1 110 3R 6684642 6684660 ATACAATGGAGCTTGTGGT 58 6684496 6684568 ATTCCAGGCTATTGTTGGT 58 NA Drosophila melanogaster 50 CG31278 FBgn0051278 FBtr0082319 2 1 1 98 3R 6533656 6533674 TCAGGATCATAGCAATGGA 57 6533505 6533594 AAATAGTCAGTGGCAACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31407 FBgn0051407 FBtr0082214 3 1 1 74 3R 5848950 5848968 TCTTTAGCAGCCTCAATGG 59 5848894 5848912 ACTGGTCTATATCCCGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8301 FBgn0037717 FBtr0082073 1 1 1 97 3R 5410209 5410227 TCATCCATCTGAAGACCCT 59 5410288 5410951 ATAGGATGCAAAGACCTCC 58 NA Drosophila melanogaster 50 MBD-like FBgn0027950 FBtr0082069 1 1 2 112 3R 5386317 5386335 AGCAACAGATCGAACTCAG 59 5386720 5386738 TTTATGGTTGCGAATCACC 58 NA DesignNoJunction Drosophila melanogaster 50 Cyp313b1 FBgn0037601 FBtr0081893 2 1 1 130 3R 4470310 4470380 GCTTATAATGGCTTGACCG 58 4470198 4470217 ATAAACCCAAACAGTATGCC 58 NA Drosophila melanogaster 50 CG1091 FBgn0037470 FBtr0081640,FBtr0081641 3 2 2 86 3R 2909299 2909420 GCATGCTAGGTATTCAGCA 59 2909231 2909249 TGTATGGGATCCTGTACCA 59 NA Drosophila melanogaster 50 Obp83ef FBgn0046876 FBtr0078618 2 1 1 60 3R 1935754 1935773 TCAAAGGAACCTATTCCCTG 59 1935713 1935731 GATCGTAGAATCCCATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MTA1-like FBgn0027951 FBtr0078734,FBtr0078733 2 2 2 91 3R 1466845 1466863 GCTCACAATAATTCCCACG 58 1466659 1466793 GAACTATAGTAACTTCAGTGCC 58 NA Drosophila melanogaster 50 7B2 FBgn0041707 FBtr0078789,FBtr0100112 3 2 2 70 3R 1203302 1203320 CAGGATAGTGCTGATGTGG 59 1203353 1203372 ATCTGCATGATGTACTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1129 FBgn0037279 FBtr0078871,FBtr0078870 1 2 2 74 3R 639630 639648 GTGGAGTTTGCCAATAAGC 59 639686 639966 AATAACCTGACGACATCCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31528 FBgn0051528 FBtr0078923 1 1 1 72 3R 243028 243046 TTCTGTTAAGCAGAGCGAC 59 243082 243100 TGCAGTAGAAGTCATCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1103 FBgn0037235 FBtr0078909 2 1 2 85 3R 163949 163967 TGAATTCAACTTCGGACTC 57 164016 164774 AGGTATACACATCAACCGA 57 NA Drosophila melanogaster 50 CG9778 FBgn0037233 FBtr0078957 2 1 1 75 3R 143409 143427 CAACTCGATAACAACCAGC 58 142805 142823 ATCGCTGGTGTCAAATAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG41457 FBgn0084019 FBtr0111149 1 1 1 75 3L 23453246 23453264 AGATGCGGAAGACTTTGTC 59 23453189 23453207 AGAGCTTTCAGAATTCCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32461 FBgn0052461 FBtr0078567 3 1 1 60 3L 22948300 22948320 GGAATTAATTGAAGAGGAGCG 59 22948260 22948278 GCTTATCATCCGACCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6049 FBgn0037081 FBtr0078400,FBtr0078399,FBtr0078398 3 3 3 80 3L 21414145 21414214 ATCTATGATCGCCATCCTG 58 21414083 21414103 CATCATTTGAATGACGAGGTC 59 NA Drosophila melanogaster 50 CG10585 FBgn0037044 FBtr0078287 1 1 1 158 3L 21021858 21021876 ATTGATAGTGCTCCTGGTG 59 21021998 21022195 TTAACCACGCTATTGTGCA 59 NA Drosophila melanogaster 50 CG33286 FBgn0053286 FBtr0113459 2 1 1 80 3L 20966343 20966361 GAGGAAAGCCAGTACTCTG 59 20966085 20966301 GAGATTTATTTCGAACGGCTG 59 NA Drosophila melanogaster 50 CG10587 FBgn0037039 FBtr0078333 3 1 1 83 3L 20955089 20955107 AGAAACTATTGCGTACGGT 59 20954871 20955042 CTGTTAAATGAACCGTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7757 FBgn0036915 FBtr0074891,FBtr0074892 2 2 2 61 3L 19904573 19904594 AGCCATAACCAACCTTATAGAG 59 19904616 19904688 GTTTCAAGGGCTCATTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15881 FBgn0036909 FBtr0074879,FBtr0074880 2 2 2 73 3L 19799699 19799718 TACGGATAACCAGTTTAGGG 58 19799807 19799825 TGATGTCCTCGACATTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 LCBP1 FBgn0036901 FBtr0074955 1 1 4 60 3L 19685850 19685868 AACTTTGCGATTGGAAGTC 58 19685469 19685828 TTGGTACATTTACTCTCGAGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 pip FBgn0003089 FBtr0075009 3 1 11 104 3L 19296135 19296224 CGATCAGGACTGTTTACCT 58 19296049 19296069 ATATTGGTCTCTTCCCAAGTC 59 NA Drosophila melanogaster 50 CG6812 FBgn0036843 FBtr0075025 2 1 1 239 3L 19058257 19058278 GAGATAATCAATGGCATAGAGG 58 19058478 19058562 CATGAAGCAAAGGAAGCAC 59 NA DesignRelaxed Drosophila melanogaster 50 Acp76A FBgn0015586 FBtr0075038 2 1 1 164 3L 19044274 19044295 CCCATATTCAAGGAGAAATTCG 59 19044062 19044149 TTCTAAACGGAGAATGGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3819 FBgn0036833 FBtr0075048 3 1 1 65 3L 18914779 18915057 GCTGGTTGTTCAATTAAGATCC 59 18914735 18914753 CGATTTAATCAGCAGAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 skl FBgn0036786 FBtr0075119 1 1 1 207 3L 18432804 18432822 GTGGACTTTGAAGGACCTC 59 18432615 18432633 GTTGTATTTGAACGGTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Grd FBgn0001134 FBtr0075139 3 1 1 133 3L 17822746 17822764 GTTACTGGACAATCTGCTG 58 17824281 17824668 TCGAGTAGGTCATATCGAC 57 NA Drosophila melanogaster 50 CG32186 FBgn0052186 FBtr0075172 3 1 1 81 3L 17788550 17788720 GAGTCAAGGTTCTCATCTG 57 17788487 17788506 TCCAGTATTAGTCTCCACAG 57 NA Drosophila melanogaster 50 CG13031 FBgn0036655 FBtr0075319 3 1 1 96 3L 16718002 16718075 GTTGATTCTCGTATCCCTG 57 16718134 16718153 ATAGAGTCCGAAAGTAGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5222 FBgn0036570 FBtr0075495 2 1 1 103 3L 16097460 16097478 TAACCATGTGTTCTCCGAG 58 16097318 16097336 CGATAAAGTGAACAGCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 AGO2 FBgn0046812 FBtr0075560,FBtr0075559 3 2 2 87 3L 15551210 15551360 AAGTGACTGTGACAGATCG 59 15551409 15551429 GATTTAAGGTCAATGGTCGAG 58 NA Drosophila melanogaster 50 RecQ5 FBgn0027375 FBtr0100362,FBtr0075715,FBtr0075714 1 3 3 81 3L 14621498 14621575 GATGGAAGCTTAGGAGATGG 59 14621436 14621457 GATCGTTGTTTATCATCTGCAG 59 NA Drosophila melanogaster 50 CG10749 FBgn0036328 FBtr0075871 2 1 1 60 3L 12965870 12965888 CATTCGAGGGTAAGAATGG 57 12965910 12965930 GGTATCACCACTATATCAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10654 FBgn0036294 FBtr0075971 3 1 1 68 3L 12499567 12500328 TGAGGAAGTCTACGTAATAGAG 58 12499520 12499539 GAAATGGATAGCTTCTCCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gap69C FBgn0020655 FBtr0075981 3 1 1 102 3L 12409095 12409385 CCTCGACAAAGATTAAAGAGG 58 12408938 12408956 TTATTCCAACCTCGTTTGC 58 NA Drosophila melanogaster 50 CG5718 FBgn0036222 FBtr0076069 1 1 1 61 3L 11916171 11916189 AAGGACATCAAGACAACCG 59 11916128 11916146 TCTAGCGTCTCAACTAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6718 FBgn0036053 FBtr0076362,FBtr0076363,FBtr0076365,FBtr0076364 3 4 4 106 3L 9854428 9854506 TGACTCCAATTAACAACCGA 59 9854341 9854359 AAATGCGCGGAAATATGAG 58 NA Drosophila melanogaster 50 CG3891 FBgn0035993 FBtr0076504 2 1 1 61 3L 9434203 9434224 GCTGCAGTCAATAATATAAGCG 59 9434163 9434181 CTGTTCGTATTCGTTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17352 FBgn0035880 FBtr0076675,FBtr0076676,FBtr0100664,FBtr0113154,FBtr0076674 1 5 5 199 3L 8349037 8349118 CTACTGCCTATAGAAGCTCG 59 8348857 8348875 CGAGAACTGGATATGCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32369 FBgn0052369 FBtr0076784,FBtr0076783 1 2 2 256 3L 7772127 7772145 CCAAGGTGGAGTACATCTG 59 7771828 7771907 AATGTCCACCTTTAGTTGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG8600 FBgn0035765 FBtr0076883 2 1 1 241 3L 7327666 7327685 ATTTCACTGAGCTGAAGGAC 59 7327372 7327390 TACTTAGATGTCGCTCTCG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG34030 FBgn0054030 FBtr0100085 3 1 1 96 3L 7067833 7067942 CATTGTAGCTTACTGTCATGC 59 7067757 7067777 GGGAATAAACGATCCAATCAG 58 NA Drosophila melanogaster 50 CG14823 FBgn0035734 FBtr0076906 2 1 4 204 3L 7059753 7059771 CATCAATCTCAAGGATCGG 57 7060660 7060678 TTGTTATCGTCGAGGTCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13293 FBgn0035677 FBtr0077050 1 1 1 130 3L 6080590 6080608 CAAGTTGTGGAAGTTCCAG 58 6080699 6080781 CGCTGGTTCTTAAGTAATAGTG 58 NA Drosophila melanogaster 50 nAcRbeta-64B FBgn0000038 FBtr0073300 2 1 2 68 3L 4429770 4429790 GCCGTTATGTAATCGTAAAGG 59 4429820 4429838 CGGTTAGCAGAGTTAACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11582 FBgn0035525 FBtr0073241 2 1 1 60 3L 4283213 4283232 TGGAATAAGTGTCGACAGAC 59 4283172 4283190 CATGAAACCACCTGTAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13802 FBgn0035330 FBtr0113127,FBtr0072886 3 2 2 60 3L 2299266 2299774 AAAGCTGAGTGACCTTATGG 59 2299797 2299815 CAGGATGAAGTTGATGCTC 58 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG13931 FBgn0035258 FBtr0072802 3 1 1 78 3L 1701475 1701493 TTCAATCACTACTCGCGTC 59 1701415 1701433 GGTCTACAAAGTCGTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7970 FBgn0035252 FBtr0072762 3 1 1 235 3L 1653240 1653320 CAAATCCATTACGGCATGC 59 1653519 1653537 AAATCGGAGCATAGACCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG18170 FBgn0035239 FBtr0100190,FBtr0100191 1 2 2 94 3L 1603319 1603339 TTCTTCAAGGGAATGGTAGAG 59 1603395 1603471 GTTGTGGTTCCTATCGAGG 59 NA Nonspecific Drosophila melanogaster 50 mthl10 FBgn0035132 FBtr0072573 2 1 2 117 3L 335072 335090 GACAAGGGATGGTCTAAGC 59 333639 334992 ATCTGTTTGTGATCAAGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 RhoGEF3 FBgn0035128 FBtr0089651,FBtr0089654,FBtr0089653,FBtr0089652 1 4 4 81 3L 302290 302367 CATTTGTGATGGTTACCTGC 59 302411 302429 GTTGGAGAAGATAAGCCGA 59 NA Drosophila melanogaster 50 CR30066 FBgn0050066 FBtr0087563 3 1 1 60 2R 10177809 10177828 AAACACTGAACGACAAATCG 59 10177768 10177788 CCGTGAACGTGAATAATATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL19 FBgn0002607 FBtr0072406,FBtr0072405 1 2 2 131 2R 20856733 20856995 TGAGTTCTCTAAAGCTCCA 57 20856554 20856572 TAAGCTTGCGAATGTTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 egg FBgn0086908 FBtr0112777 2 1 1 80 2R 20665802 20665874 ACTATGTGCATGAAGTTCCA 59 20665741 20665762 TCTTAACAGCGTAGTATGTCTC 59 NA Drosophila melanogaster 50 CG4563 FBgn0035006 FBtr0072355 2 1 1 195 2R 20339840 20339925 GATCTATGTACCTGCTTCCC 59 20339606 20339624 GGTAATCGAGAATCCGGTC 59 NA Drosophila melanogaster 50 Sox14 FBgn0005612 FBtr0072158,FBtr0072157 1 2 2 178 2R 19868267 19871083 GAACCAAGAAACATTCGCC 59 19871225 19871243 TATGTACGGCTGCTTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18128 FBgn0034898 FBtr0072094 1 1 1 92 2R 19607155 19607173 AAGTACGGACTAATCTGCG 59 19607081 19607099 GAAGTTGGGTATGTCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13542 FBgn0034809 FBtr0071987 3 1 1 184 2R 18897198 18897216 GATGAGGATGAAGTGGAGG 59 18896681 18896699 AAATTGCACATGACCTGAC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30190 FBgn0050190 FBtr0113362,FBtr0113363,FBtr0071950 3 3 3 120 2R 18817485 18817503 TGAGGCCAAGAAATCAGAC 59 18817586 18817724 ATGTTGTAGTTGAAATCGCC 58 NA Nonspecific Drosophila melanogaster 50 stl FBgn0086408 FBtr0113110,FBtr0071885 1 2 2 80 2R 18703125 18703200 ACCATCACATTCAGATATCTCC 59 18703241 18703259 TTGCTACTCAGTTCGTCTG 59 NA Drosophila melanogaster 50 CG13516 FBgn0040658 FBtr0100554 2 1 1 78 2R 18557546 18557655 TCTGTTTGGTCGGATTCTG 59 18557697 18557715 CAATAGTGGTTTCCAGTGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG13502 FBgn0034692 FBtr0113103 1 1 2 62 2R 17974261 17974279 GATCAAGAATGCCAATCCC 58 17974055 17974235 CTATTCAGCTCAAGAGCCT 58 NA DesignNoJunction Drosophila melanogaster 50 comr FBgn0034667 FBtr0071735 2 1 1 60 2R 17752646 17752664 GGATTCGCAATACGATGAC 58 17752604 17752623 GTCGAAGTAATCCTCTTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18735 FBgn0042098 FBtr0071744 1 1 1 60 2R 17686279 17686298 TAAATGGCTTCTACCATCGT 58 17686238 17686257 CTATCCTGACGATTATGCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 swi2 FBgn0034262 FBtr0086889 1 1 1 82 2R 13579494 13579514 CGAACTAATATGCACAGATCG 58 13579373 13579450 ATTGTCTCTTCAGCTCCAG 58 NA Drosophila melanogaster 50 CG4866 FBgn0034232 FBtr0086940 3 1 1 103 2R 13406107 13406125 GGAGTTTCCAATGATCAGC 58 13406192 13406267 GACATTCGAAGTTTCACCA 57 NA Drosophila melanogaster 50 CG34189 FBgn0085218 FBtr0112382 2 1 1 60 2R 12642090 12642109 GAGGATCATATCCTGAACCA 58 12642131 12642150 TCCATATGTACTTCATGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34457 FBgn0085486 FBtr0112763 2 1 1 84 2R 12558812 12558888 GAAGATATACCTAGCAATTCCC 57 12558932 12558951 TTTGGATCAGAACATTCTCG 57 NA Drosophila melanogaster 50 CG33459 FBgn0053459 FBtr0089859 2 1 1 82 2R 12376128 12376219 GACAGTTGAATATACAGTTGCC 59 12376262 12376280 AATCCACAAGCCAATACCA 59 NA Drosophila melanogaster 50 Cyp6a9 FBgn0013771 FBtr0087457 1 1 1 76 2R 10767788 10767806 TGGAAAGTACAACGGAGAG 58 10767677 10767748 GGGTTTCCGATATAACCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsc70-5 FBgn0001220 FBtr0087568 2 1 1 75 2R 10141098 10141117 ATAGTCCACGATACTGAGAC 58 10140982 10141060 TCTTTAGCTTCTCGCACTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13337 FBgn0033863 FBtr0087626 1 1 1 60 2R 9553683 9553701 TATATGCAAAGCACAGGAG 57 9553724 9553743 ACTAAGGCAGTCTTCTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4643 FBgn0043010 FBtr0087762,FBtr0087763 3 2 2 77 2R 9108960 9108978 AAGAACTACGAGTTCCTCG 58 9108838 9108856 GTAGACAGCGGATACTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 sca FBgn0003326 FBtr0087855,FBtr0087856 1 2 2 158 2R 8687287 8687506 AAGAATAAGCTCACCCACC 59 8687628 8687646 GATAATGGCCTCGTACTGG 59 NA Nonspecific Drosophila melanogaster 50 CG8594 FBgn0033755 FBtr0087826 3 1 1 95 2R 8460031 8460050 CGAATAGGAACATCAACAGC 58 8460108 8460210 CTTCGTAGTCCAAGCTCTC 59 NA Drosophila melanogaster 50 CG8818 FBgn0033751 FBtr0087941 2 1 1 206 2R 8405342 8405360 AAGAGCTAGTGGAGAGGAG 59 8405040 8405058 ATTCACTGCAGGATTTGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG12370 FBgn0033744 FBtr0087936,FBtr0113075 2 2 2 121 2R 8372560 8372633 TGCAAGTGATAACCACAGAG 59 8372775 8372793 CAGCGTGTACAGATAGAGG 59 NA Drosophila melanogaster 50 CG30037 FBgn0050037 FBtr0088049 1 1 1 60 2R 7867328 7867346 ACACCTACAACAACTTGAC 57 7867286 7867304 CAACTCTGGGTGATATGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12914 FBgn0033499 FBtr0088334 2 1 1 114 2R 6136262 6136280 ATATTTGTCCTCACCTGCT 58 6136358 6136459 AGACTATGACAAACACGCT 58 NA Drosophila melanogaster 50 lectin-46Cb FBgn0040092 FBtr0088475 2 1 1 182 2R 5703154 5703224 AAAGATGAACTGGTTTGGC 58 5703370 5703388 TTGCTGATGTACTGGAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Rep2 FBgn0028408 FBtr0112930,FBtr0088597 1 2 2 118 2R 5184940 5184958 AGGATGGCGAATACTTTCG 59 5185039 5185788 CGGTATAGCTGATATGGCAG 59 NA Drosophila melanogaster 50 CG8170 FBgn0033365 FBtr0110892,FBtr0088665 3 2 2 124 2R 4907046 4907121 GTACCTGATTGGTGTGGTC 59 4906940 4906958 AGATGTTCATCGTGAGTCC 59 NA Drosophila melanogaster 50 rgr FBgn0033310 FBtr0088692 3 1 1 80 2R 4496832 4496850 GGTACTTTGAGAGGATGGA 57 4496894 4496972 TCTCATTGGAAATCTTGGC 57 NA Drosophila melanogaster 50 CG8712 FBgn0033258 FBtr0088823,FBtr0088822 3 2 2 62 2R 3985319 3985340 CTCCAAGTCTATAAGTTCAGCT 59 3985278 3985297 GGCTGTGATACCTCATTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CSN4 FBgn0027054 FBtr0088859 1 1 1 111 2R 3860591 3860609 GATCGCTCGACTCTATCTG 59 3860682 3860761 ATATAGAACCTGCAACTCCTC 58 NA Drosophila melanogaster 50 ubl FBgn0022224 FBtr0086211 1 1 1 82 2R 2697754 2697772 AAGCACGAGAAGATTGTCC 59 2697625 2697711 CCATCGTGAATTTCATAGTCAG 59 NA Drosophila melanogaster 50 SCAP FBgn0033052 FBtr0086027 1 1 1 98 2R 1914898 1914916 TAAGACTAGCCCATCAGCA 59 1914762 1914836 TGAGGCAATACACCTTGAG 59 NA Drosophila melanogaster 50 CG41443 FBgn0084008 FBtr0111279 1 1 1 89 2R 1142636 1142654 ACGTGGACGTAGATTTGTG 59 1142705 1142725 GACGAACAGATAAGTCATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-640g FBgn0083020 FBtr0113554 1 1 1 65 2L 20421818 20421836 TTCGTGTCTACAATGCTCC 59 20421863 20421883 GGAAATATAAGACTGCTTCGG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41485 FBgn0084045 FBtr0111242 1 1 1 61 2L 22834394 22834412 CTTTGGTTCTGGGAAGAGG 59 22834437 22834455 CCAAGGATGTTATTGTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dap160 FBgn0023388 FBtr0081503,FBtr0081504 2 2 2 80 2L 21137683 21137769 GAACAGATCTTGGACAAGG 57 21137621 21137639 ATCGTCCTTATCAAACGAC 57 NA Drosophila melanogaster 50 CG31798 FBgn0051798 FBtr0081200 2 1 1 272 2L 19395004 19395082 TAATAGCCGAAATTGGCAG 57 19395376 19395394 TATAGAGTCGGGATAAGCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG10341 FBgn0032701 FBtr0081097,FBtr0113042 2 2 2 83 2L 18698971 18699048 CAACAGAAGCTACGAATGC 59 18699092 18699113 CTTGTGTTGACTCATTTACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 qua FBgn0003187 FBtr0080997,FBtr0080996 3 2 2 100 2L 17487330 17487412 ATTACGGCAAGAACTTCCA 59 17487248 17487266 GATTAGAGCCGATCCTTCG 59 NA Drosophila melanogaster 50 CG4103 FBgn0028925 FBtr0080727 1 1 1 61 2L 15009376 15009450 GCTCTCAATGTGATGAATGC 59 15009334 15009353 AGGACAATATCCCGAAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15286 FBgn0028531 FBtr0080625 2 1 1 60 2L 14339124 14339144 CGTAATGTCATTGTGGAAGAG 59 14339165 14339184 CATTGATGGTGAATGGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33640 FBgn0053640 FBtr0091617 3 1 1 67 2L 13528172 13528190 ATAACTATGCGCAGTTCCT 58 13528221 13528420 CTCGTCTATGTAGGTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pk34A FBgn0028410 FBtr0080432 2 1 1 60 2L 13159815 13159836 GAATTATCTCCTGAATACGGCT 59 13159856 13159875 GAAACACGAGTTCAACAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 A16 FBgn0028965 FBtr0080427 1 1 1 105 2L 13019809 13019827 ATGAATCGAGAACGACGTC 59 13019654 13019674 CCTAATACCTAAGTAACCGCT 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Ced-12 FBgn0032409 FBtr0080330 3 1 1 100 2L 12099281 12099299 CAATGTCAACTTCTCGCAG 59 12099363 12099441 CCAACGCTAATATACCCGG 59 NA Drosophila melanogaster 50 bib FBgn0000180 FBtr0079929 3 1 1 105 2L 9987720 9992265 CTTTATGGCGTAACTGTGC 59 9992334 9992352 TGAGGATGAATTCCACACC 59 NA Drosophila melanogaster 50 CG31712 FBgn0051712 FBtr0079896 2 1 1 60 2L 9935311 9935331 AGAGCAGAAGGTCATATTAGG 58 9935271 9935289 TTTCAGGGAGAACGATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yip2 FBgn0040064 FBtr0079876 1 1 1 108 2L 9916890 9916908 AACTGAATGTGAACGGAGG 59 9916980 9917057 TACTTTAGCTTCTTGCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG13117 FBgn0032140 FBtr0079864 1 1 1 78 2L 9736915 9736933 AGAGCAATATCTACACGCC 59 9736975 9736993 AAATTGCTCAACGTTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3759 FBgn0032116 FBtr0079807 2 1 1 80 2L 9420816 9420834 TACTCTTAACAGCACTGCT 58 9420876 9423310 GGCAGATGGTATTATCATCTG 58 NA Drosophila melanogaster 50 CG9515 FBgn0032077 FBtr0079791 1 1 1 80 2L 8942553 8942572 ACGTATACTTTGGCGATCTG 59 8942436 8942511 AAGCACCAGCTTTATCTAGG 59 NA Nonspecific Drosophila melanogaster 50 Glt FBgn0001114 FBtr0079727,FBtr0079726,FBtr0079725 3 3 3 281 2L 8674101 8674119 ACCATCCATTAACCCATCC 59 8674363 8674775 TGATCATAGATTCGCGACAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13394 FBgn0032037 FBtr0079717 1 1 2 182 2L 8389265 8390107 ACTTAGCTCCCAATATGCG 59 8389101 8389119 GAACTCCTTCCTCGAATGG 59 NA Drosophila melanogaster 50 Spn2 FBgn0028987 FBtr0079624 1 1 1 114 2L 8240743 8240762 GACTTCAAAGATCTGGTCGA 59 8240593 8240666 AAAGTAAAGCTGTTGCAGC 59 NA Nonspecific Drosophila melanogaster 50 CG7102 FBgn0031961 FBtr0079559 3 1 1 80 2L 7884707 7884726 GAGTGCGTTAAGACTAATGC 59 7884573 7884666 CAAGCAGAAATAGTCTGAGGA 59 NA Drosophila melanogaster 50 Rack1 FBgn0020618 FBtr0079565 2 1 1 101 2L 7825962 7825980 GAACCTGTACACTCTGGAG 59 7825879 7825897 CAGATCTTGATCGAGGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31642 FBgn0051642 FBtr0079199 1 1 1 60 2L 6119521 6119540 CATCATCCTCACTACATCGG 59 6119561 6119581 GCTGTATTAGTACCAGGAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14024 FBgn0031697 FBtr0079082 1 1 1 138 2L 5313078 5313276 TATATTAGCTGGCTACGATGTG 59 5312961 5312979 CACAAAGAGAAAGGACAGC 58 NA Drosophila melanogaster 50 CG3887 FBgn0031670 FBtr0079000 3 1 1 122 2L 5011327 5011421 CCTTTACTGCTACTCCTGC 59 5011507 5011525 TAATAGTTTAGACCCGGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k05819 FBgn0022153 FBtr0077433,FBtr0077432 3 2 2 87 2L 4396832 4396851 AAACAGATTGGATTCACCGA 59 4396901 4396981 CAACATCAGGTTGCAAGTG 59 NA Drosophila melanogaster 50 Traf1 FBgn0026319 FBtr0077429,FBtr0112925 3 2 3 127 2L 4372534 4378919 CAGATTATCTATCCCGGTCC 58 4379009 4379027 TTACAGGCGTTGAGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 for FBgn0000721 FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305 1 10 10 81 2L 3624268 3624289 GCTAATTTCCAATCTAGACGAG 58 3623866 3624229 GAATTCCTCGTTGATCTTTCTG 59 NA Drosophila melanogaster 50 CG3488 FBgn0014906 FBtr0077576 3 1 1 128 2L 3167131 3167213 AACAGGAGGATGACATCAC 58 3167305 3167323 CAATGTGATTTAGCACCGC 59 NA Drosophila melanogaster 50 CG3523 FBgn0027571 FBtr0077659 3 1 1 85 2L 3067107 3067195 GTGGAAACGATCAAGAAATCC 59 3067242 3067260 GTCTTGAGCTTCAGAGTGG 59 NA Drosophila melanogaster 50 Lsp1beta FBgn0002563 FBtr0078025 1 1 1 96 2L 898846 898864 CTCTTCGAGATCGTCTACC 58 898924 899010 GAGTGTAGTAGGACTCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2807 FBgn0031266 FBtr0078068 3 1 1 60 2L 570338 570357 ATTCTTCCGTTGCTTATGTC 58 570377 570398 CCTTCACTAATAAATGACGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mt:tRNA:D FBgn0013691 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Nipsnap FBgn0030724 FBtr0074258,FBtr0074257,FBtr0074259 2 3 3 278 X 15965372 15965391 ATCTTAGCTTGATGCAGGAG 59 15964887 15965071 GCAGAGATTTGTAACACCA 57 NA DesignRelaxed Drosophila melanogaster 50 CG6299 FBgn0030641 FBtr0074033,FBtr0074032 2 2 2 139 X 15360379 15360398 TCATATGCACCTTCTTCGAG 59 15360497 15360584 GTAGATGATCTTGATTGTGCTC 58 NA Drosophila melanogaster 50 cac FBgn0005563 FBtr0100303,FBtr0100302 2 2 10 158 X 11856301 11856320 ATTCACCGGAATGTTTAGTG 58 11848301 11856054 TTGATTGAGTTCGAATCCC 57 NA Drosophila melanogaster 50 CG34348 FBgn0085377 FBtr0112557 3 1 1 137 X 11234653 11234671 TCTGGACTATTCGCTATGG 58 11234772 11237290 ATTATTACCTGCCTGTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 Dlic2 FBgn0030276 FBtr0073441,FBtr0073443,FBtr0073442 1 3 4 94 X 11049247 11055097 AAAGGAGAACCTATGGTCG 58 11055153 11055173 TGTCGCCTAATACTAGTACAG 58 NA Drosophila melanogaster 50 CG1628 FBgn0030218 FBtr0071510 3 1 1 122 X 10493310 10493328 CATCAGAGGCTTCTATCGC 59 10492950 10493226 TCTTTGGATTGATCATCCCTG 59 NA Drosophila melanogaster 50 CG12081 FBgn0030053 FBtr0071218 3 1 1 73 X 8483604 8483622 TACATCTTCGGTGGATTCG 59 8483659 8483677 ATGGTGTCCAGATTAAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pod1 FBgn0029903 FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966 1 5 6 106 X 6701674 6702856 CAATTATTCCACGTTTGGGT 58 6702925 6702943 GATATTCTCGTGGGATCCC 58 NA Drosophila melanogaster 50 CG12236 FBgn0029822 FBtr0070825,FBtr0070826 3 2 2 79 X 5803548 5803566 GGATGAGCAGACCATAGTG 59 5803683 5803702 CAATGTAATCGGGTATGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15778 FBgn0029788 FBtr0070803 2 1 1 76 X 5578109 5578128 TTATTATCGCGATACGGAGC 59 5578238 5578256 TATTGGCCATTTGGTAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fcp3C FBgn0000644 FBtr0070542 1 1 1 80 X 3067747 3067766 TTGGATCATATGTTTCCCTG 57 3067614 3067704 CAGATGTTGTACGATCGTC 58 NA Drosophila melanogaster 50 CG40245 FBgn0058245 FBtr0113844 1 1 1 70 U 688210 688228 TTCAATGTATACACGGCTC 57 688158 688176 CAAACTCGTTCCAATCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 plexA FBgn0025741 FBtr0089226,FBtr0089223 3 2 5 194 4 1043035 1043053 GATGATGTCCTCTTTGCTG 58 1040633 1042878 TTGCAGTTTCGTTAGAACAC 58 NA Drosophila melanogaster 50 Slip1 FBgn0024728 FBtr0089090 2 1 1 80 4 685866 685886 TTAGAAACTCAGATAGCCAGG 58 685928 686591 GTCATCATCGTCTTCAGGG 59 NA Drosophila melanogaster 50 CaMKI FBgn0016126 FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065 1 6 7 94 4 467853 470559 TTTGAGAAGGTTCAGTGCA 59 470887 470908 CATACGTTTCTAAGAGTTGCAC 59 NA Drosophila melanogaster 50 CG12063 FBgn0039851 FBtr0085790 3 1 1 137 3R 27331592 27331611 GATAAGTTCGCCTTCAATGG 58 27331710 27331956 AATTATGAAGCCATAGCCGT 59 NA Drosophila melanogaster 50 scrib FBgn0026178 FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0100181,FBtr0085019 3 6 7 200 3R 22404542 22404830 TTCATATCGCACATTGTGC 58 22404993 22405374 TAGCACTTCCTGAAATCCTG 59 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625 2 8 17 92 3R 20521093 20521111 GGACATTAAGGACGAGACG 59 20521837 20528752 GTGATATCACCTAAGTCATCGA 59 NA Drosophila melanogaster 50 CG10881 FBgn0038796 FBtr0083885 1 1 1 65 3R 16234657 16234675 CATGACCGAGACTGATCTC 59 16234703 16234722 GCCAAATACATCTTGGTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 htl FBgn0010389 FBtr0083548,FBtr0083550,FBtr0083549 1 3 3 60 3R 13872690 13872708 ATATCTTCGTCTTTGGCGG 59 13872648 13872666 GCATAGAACACAAACAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 1 15 15 89 3R 7811197 7811279 CCCAAGAATAACATGCTTAAGC 59 7811129 7811148 CAGCTGTGTAAGATTAGCCT 59 NA Drosophila melanogaster 50 CG4820 FBgn0037876 FBtr0113221 3 1 2 152 3R 7043274 7043350 GTGAGACATGAAAGGGAGG 59 7043522 7043540 ACTGGAAGAGTTGATGTGC 59 NA Drosophila melanogaster 50 CG4509 FBgn0037840 FBtr0089880 1 1 1 80 3R 6671487 6671574 GTTCGCATCAAGCATAACC 59 6671616 6671636 GTCGTTGATCAGATTAGTCCT 59 NA Drosophila melanogaster 50 tws FBgn0004889 FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190 3 8 8 80 3R 5954404 5954422 TCTCCAGGGATTACTTGAG 57 5954228 5954360 ATTCATGAACCGGATAGGT 58 NA Drosophila melanogaster 50 mura FBgn0037705 FBtr0082116,FBtr0082117,FBtr0082118 3 3 3 84 3R 5367294 5367414 GGAACTTGAATAACCACTTTGG 59 5367231 5367250 AAGTTGTACGAAGAACCCTC 59 NA Drosophila melanogaster 50 CG11718 FBgn0037585 FBtr0081852 3 1 1 97 3R 4192159 4193216 TGATCAGAAATCGAGTTCCC 59 4192081 4192099 GATAGTGCTCGTGGAACTC 59 NA Drosophila melanogaster 50 CG1104 FBgn0037467 FBtr0081643,FBtr0081644 1 2 2 137 3R 2897573 2897645 GTATCACGATTTGGTCCTG 57 2897454 2897472 TTAGAAATCGATGCACGTG 58 NA Drosophila melanogaster 50 CG1193 FBgn0037375 FBtr0078628,FBtr0078627 1 2 2 189 3R 1611780 1611995 AATACTCCAGGAAGCAGTG 58 1612148 1612166 GTATTTCGAGGTCAGGGTC 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-110 FBgn0083057 FBtr0113600 2 1 1 60 3L 831923 831942 AAATCGTGATCACTGAACCA 59 831882 831900 CAAATCAGTGAAGTGTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3529 FBgn0035995 FBtr0076461 3 1 1 108 3L 9442915 9443129 GGTAAGTAAATCGACGAAAGAG 58 9443360 9443379 GAATTTGTCAAACTCCGAGC 59 NA Drosophila melanogaster 50 CG8209 FBgn0035830 FBtr0076753 3 1 1 279 3L 7970256 7970276 AGTTGGAGATGAAGAAGATCG 59 7970573 7970591 TTGACGTTGAAGGTTTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 Scsalpha FBgn0004888 FBtr0073151 2 1 1 74 3L 3817925 3817943 GTCATTGTGACCAGGAGTC 59 3817981 3817999 TTACACTAACTCCAGACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12034 FBgn0035421 FBtr0073043 1 1 1 60 3L 3220113 3220133 GAGATAGCCGAATACAAACTG 58 3220155 3220173 AGAAGCTAAATTTCTCGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3880 FBgn0035057 FBtr0072371 3 1 1 176 2R 20649505 20649523 GCATCGATTACAACATGCT 58 20649663 20649737 CAGACCACTGATCAAATCG 58 NA Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 3 8 8 81 2R 19817553 19817571 GGATATCATGGAGAAGCCC 59 19817426 19817508 TCCAATAGCCATGTAACGG 59 NA Drosophila melanogaster 50 egl FBgn0000562 FBtr0114586 1 1 1 80 2R 19623883 19623901 CTCAAGGGCTACTACAAGG 59 19623759 19623840 GGAGTCACTTTGATCTTTGC 59 NA Drosophila melanogaster 50 CG3500 FBgn0034849 FBtr0072038 3 1 1 243 2R 19244588 19244606 ATCAGCTTCACGATCTTCG 59 19244178 19244381 TAAAGTAAGCCAGCACCTG 59 NA DesignRelaxed Drosophila melanogaster 50 Obp58c FBgn0034769 FBtr0071920 1 1 1 95 2R 18593777 18593795 GTTCACTGAAAGGTTTCCC 58 18593640 18593658 ATGGAGGTATTCTCTTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG16926 FBgn0040732 FBtr0086499 2 1 1 72 2R 15388240 15388258 AGATAAGGGTTCCGTTGAC 58 15388110 15388129 CTTGTCGTTGTACTTGTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 hts FBgn0004873 FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086548 1 5 6 87 2R 15295689 15295707 TTCGATAACGTCACAGACG 59 15295552 15295639 TGTCGGTATATTCACCATGC 59 NA Drosophila melanogaster 50 CG14502 FBgn0034321 FBtr0086756 2 1 2 60 2R 14181433 14181451 AGTTGATCAATGCAATGGC 59 14181537 14181555 ATAGGTTTCAATGGACAGC 57 NA DesignNoJunction Drosophila melanogaster 50 mbl FBgn0053197 FBtr0086994 1 1 4 126 2R 13249486 13249504 AATTCTCTGGCATGGTACC 59 13249593 13260591 TGTCCAGTAAATGAGACTGG 59 NA Drosophila melanogaster 50 CG15863 FBgn0033467 FBtr0088441 3 1 1 63 2R 5846827 5846846 GTTCTGGTGAACAAACATCG 59 5846783 5846801 GCTTAAGATGTGTACCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pgi FBgn0003074 FBtr0088679,FBtr0088681,FBtr0088680 1 3 3 93 2R 4799447 4799529 AGAAGAATGCTCCTGTTATCC 59 4799374 4799392 TACTGATCGTAGGGAAGGA 58 NA Drosophila melanogaster 50 CG41121 FBgn0069930 FBtr0111251 1 1 2 119 2L 22708255 22708273 GTAGTGATGTATCTCCGCT 58 22708356 22709162 GAACGTGGTCTAAAGAACG 58 NA Drosophila melanogaster 50 Hr39 FBgn0010229 FBtr0081481,FBtr0081480,FBtr0081479 3 3 4 154 2L 21256008 21256026 AAGATAACCCTATCGCAGG 58 21257042 21257115 AACTCTGTCGTATCTGACTG 58 NA Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445 1 8 8 80 2L 20877196 20877214 CTGCAAGAAGATACCAGTG 57 20877069 20877155 GAAATATACTGGGTACTCAGTC 57 NA Drosophila melanogaster 50 CG9318 FBgn0032880 FBtr0081393 3 1 1 202 2L 20731947 20731965 ATCACCTTAGCATTTGCCT 59 20731709 20731781 AATGAGAAGACCACACCAG 59 NA DesignRelaxed Drosophila melanogaster 50 fbp FBgn0032820 FBtr0081321,FBtr0081322 2 2 2 82 2L 19762541 19762561 AGTCATCCTATACCACATGTC 58 19762297 19762497 GTATTTGCCCTGTTTCTCC 58 NA Drosophila melanogaster 50 CG31857 FBgn0051857 FBtr0080380 2 1 1 61 2L 12516907 12516925 TCTCGCCAACGATATACAC 59 12516864 12516882 GGCACTATTTGGTATGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14921 FBgn0032345 FBtr0080227 3 1 1 84 2L 11121520 11121538 ACTCAATCGTCTGGTAACC 58 11121454 11121472 CTCAAAGAAGATGGGTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13102 FBgn0032088 FBtr0079766 1 1 1 80 2L 9012551 9012636 GTACAACTGGAATAACGATGTG 59 9012677 9012695 TTAAGTGCTAAGCTGCAGG 59 NA Drosophila melanogaster 50 CG17906 FBgn0032086 FBtr0079762 3 1 1 82 2L 8994953 8994971 CTGGATCTCACACTACACC 59 8995015 8995097 CTGGCATGGTTAATGATAGAG 58 NA Drosophila melanogaster 50 CG9967 FBgn0031413 FBtr0077799,FBtr0100648 3 2 2 123 2L 2309692 2310134 TTTCCTCAACGATTACAGCA 59 2309588 2309606 CTCCGGAGGATTATCATCC 58 NA Drosophila melanogaster 50 Ory FBgn0046323 FBtr0113893 2 1 1 60 YHet 233544 233567 CTATCTCATATGCCTACTGTAGAG 59 233586 271130 GGTTTATACGCTGTTGCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG14213 FBgn0031047 FBtr0074743 3 1 2 80 X 19533364 19533383 CATATGAATCCTCAGCAGCA 59 19533426 19533496 ATTGATCCACTGGTACACC 58 NA DesignNoJunction Drosophila melanogaster 50 l(1)G0222 FBgn0028343 FBtr0074490,FBtr0074489,FBtr0074488 3 3 3 114 X 17468998 17469093 AGCCCAAGGAAATCATCTG 59 17468902 17468922 TTTGACTGGGATCTTAGTACG 59 NA Drosophila melanogaster 50 CG2061 FBgn0027498 FBtr0073429 2 1 3 189 X 10986739 10986819 AACTCGTATTTCGCTTCGT 59 10987088 10987107 AAAGGGATTCTTCAGGTAGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 sev FBgn0003366 FBtr0073393 3 1 1 86 X 10972705 10972723 ACTTAGCCGATTACGACTG 59 10972571 10972657 CAAATCGGAACCTGTATTGTG 59 NA Drosophila melanogaster 50 fz4 FBgn0027342 FBtr0071018,FBtr0071017 1 2 2 77 X 7002382 7002400 CTTTCAAACGTCAGCAGTG 59 7002261 7002279 TGATTGCCTACGAAACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Parg FBgn0023216 FBtr0070585 2 1 1 60 X 3564619 3564706 CAGACATCAACTTTAACAGGC 59 3564579 3564598 TTAAGCTTCTCCAGAACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-1377b FBgn0083050 FBtr0113597 3 1 1 74 3R 26033319 26033338 TTTGCTGGAAGTTACATCCA 59 26033264 26033282 ACATTGTGGAGTGATAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18672 FBgn0040628 FBtr0085762 1 1 1 98 3R 27086878 27086896 ATCGGAACGAGAAGTACAG 58 27086955 27087033 CATTGTCCTTCCTAACAATAGC 59 NA Drosophila melanogaster 50 dco FBgn0002413 FBtr0085744,FBtr0085743 1 2 3 221 3R 26884331 26886097 GAACCCTTCGAATACAAAGC 59 26883518 26883536 GATCCCGATCCTATCTTGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG33920 FBgn0053920 FBtr0091924 2 1 1 64 3R 26870353 26870371 TTTCATTAGGCCCTTCACC 59 26870250 26870268 TTTCGATCACGAGATCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10514 FBgn0039312 FBtr0084864 3 1 1 119 3R 21104577 21104597 CACAAGATATTCACTGAGACG 58 21104416 21104496 TACCGTAGAATGCAAAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dad FBgn0020493 FBtr0100160,FBtr0083394,FBtr0083393 3 3 3 82 3R 12894609 12894696 TTTGAAACCAATAGGGCTG 57 12894741 12894760 TTAATGCTGAAGTAGTCGAC 57 NA Drosophila melanogaster 50 CG4520 FBgn0038355 FBtr0083167 2 1 1 113 3R 11571115 11571133 CGTGATGAGATCGGTATCC 59 11571210 11571285 TAATGGGAGTAACGTGCTG 59 NA Drosophila melanogaster 50 Act88F FBgn0000047 FBtr0083143 2 1 1 62 3R 11267216 11267234 TCTGTATGCCAACTCTGTG 59 11267260 11267339 ATACGATCGGCAATACCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 PGRP-LB FBgn0037906 FBtr0082398,FBtr0082396,FBtr0082397 3 3 3 202 3R 7279014 7279184 AGATTGGAGAACCGAACTG 59 7278830 7278848 CTTCGGTGTCGTTTATGTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG4757 FBgn0027584 FBtr0082339 2 1 1 96 3R 6988486 6988504 TCCTTTGTTGAAGCGAGAG 59 6988564 6988638 TTTGTTGTGAGGATCACCC 59 NA Drosophila melanogaster 50 CG16817 FBgn0037728 FBtr0082082 1 1 1 63 3R 5504316 5504335 GCAATGACTTGATCTACGTC 58 5504361 5504450 TCCGTAACTTTGTGTTCGA 59 NA DesignRelaxed Drosophila melanogaster 50 Paps FBgn0020389 FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885 1 6 6 93 3L 19853427 19853509 TAGACAGCATGGAGATCCT 59 19853566 19853584 AACTCATCCTTCCTCTTGG 58 NA Drosophila melanogaster 50 CG18223 FBgn0036832 FBtr0075070,FBtr0075071 3 2 2 61 3L 18913133 18913153 TCATATCGAGAACCTACATCC 58 18913033 18913110 TACGATCTTGCGCTTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7739 FBgn0036509 FBtr0075596 2 1 1 60 3L 15555597 15555616 AATACCACCGAACTGAAGTG 59 15555556 15555576 CCATTACCTCTCCTTTACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 BobA FBgn0040487 FBtr0075673 1 1 1 60 3L 14939103 14939122 AGAAGAAATCTCTTACCGGC 59 14939062 14939081 TTCTTGATGGTCTTCAGCAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10638 FBgn0036290 FBtr0089321 1 1 2 96 3L 12492359 12492433 TTTGGTCACTAAGCTTTGG 57 12492281 12492299 ATCGATATAGTCCAAGCCA 57 NA Drosophila melanogaster 50 CG14154 FBgn0036093 FBtr0076258 3 1 2 86 3L 10635692 10635813 GGAGATGATGTTCTTAACGC 58 10635862 10635880 AATTGGGTTAGATTGGCGT 59 NA Drosophila melanogaster 50 CG6640 FBgn0036068 FBtr0076313,FBtr0076312 1 2 2 216 3L 10090284 10090852 GCTGGTCTCATCTTTATCTC 57 10090026 10090044 CAATAACCAATCCACCGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6694 FBgn0035900 FBtr0076656 1 1 1 98 3L 8501329 8501444 CATCTGTGTCAGCTTTCTG 58 8501249 8501267 AAATAGTACCGACAGACGG 58 NA Drosophila melanogaster 50 Cpr60D FBgn0050163 FBtr0072334 2 1 1 126 2R 20550739 20550816 TATAGCCTTATCTTTGCCCT 57 20550632 20550650 TGATCTCATGCTGGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11414 FBgn0035024 FBtr0072307 3 1 1 82 2R 20451703 20451721 TCGTATGACATTGTACCCA 57 20451766 20451852 ACCTCATCAACCAATTTCTG 58 NA Drosophila melanogaster 50 CG34445 FBgn0085474 FBtr0112749 3 1 1 73 2R 18535595 18535613 AATTACTATGTGCCGTGCA 59 18535540 18535558 GAACGTCCAAAGTAACAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 qkr58E-2 FBgn0022985 FBtr0071828 1 1 1 91 2R 18305129 18305203 CACAGCTCCAAAGATTTCG 59 18305257 18305276 AGCATTTGTCTACTTAGGCT 58 NA Nonspecific, InUTR Drosophila melanogaster 50 CG34005 FBgn0054005 FBtr0100060 3 1 1 69 2R 13936048 13936123 AATGGCTAAGTTACAGTTGG 57 13936155 13936173 TAGGATTAAAGCCTGCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Acp53Ea FBgn0015584 FBtr0087080 3 1 1 61 2R 12637670 12637754 TACTGGCTCTCGTATTTGTG 59 12637628 12637648 CAACCAATTCTCCCATATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aPKC FBgn0022131 FBtr0110996,FBtr0110998,FBtr0110999,FBtr0110997,FBtr0110995,FBtr0087426 3 6 6 85 2R 10835448 10835466 TGCTCTATGAGATGTTGGC 59 10835324 10835401 CAGATAGTCCTCAGTGTTCTG 59 NA Drosophila melanogaster 50 CG12860 FBgn0033954 FBtr0087480 2 1 1 68 2R 10553764 10553782 GACATACCCTACAAGCCAG 59 10553714 10553732 CTTGTCATCCAAACGTACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8830 FBgn0033738 FBtr0087950,FBtr0087951 1 2 2 61 2R 8321598 8321616 TGAATAGCGTACTTCAGGC 59 8321297 8321315 GATAAGCAGGATTTGCCTG 58 NA DesignNoJunction Drosophila melanogaster 50 skpB FBgn0026176 FBtr0088020 2 1 1 64 2R 8026992 8027010 GAATGACTTTCTGCCACAG 58 8026946 8026965 ATTTATCCTCACACCACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 thetaTry FBgn0011555 FBtr0088162 2 1 1 60 2R 7229892 7229911 TATAACTCGAAGACCATGGA 57 7229851 7229869 CCTTTACCTTCTCGTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9080 FBgn0033593 FBtr0088191 1 1 1 189 2R 7129653 7129671 ATGAAACAGTACCTGGTGC 59 7129482 7129500 CTCCACAGCAATATCCTCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG34220 FBgn0085249 FBtr0112413 1 1 1 60 2R 5929611 5929629 GTGAGCCTAATGATACGAC 57 5929569 5929588 GTTATAGTGGTGGTTGTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Epac FBgn0085421 FBtr0112636,FBtr0112635 3 2 2 95 2R 2653106 2653124 AATGGATCCGTTCTTGGAC 59 2652230 2653047 TCGCAGTGGAAGTAATTGG 59 NA Drosophila melanogaster 50 CG15909 FBgn0033090 FBtr0086122 1 1 1 73 2R 2570758 2570836 ATGGTATGTCTTCGTGCTC 59 2570872 2570891 AATTAGCTGTGAGTCTTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arr1 FBgn0000120 FBtr0081030 1 1 1 129 2L 18079716 18079967 ACCACACTTATTGCCAGTC 59 18080057 18080078 GCATCAGAATAAATGGTAGCTC 59 NA Drosophila melanogaster 50 CG34043 FBgn0054043 FBtr0100098 2 1 1 89 2L 10280114 10280132 GAATACAGAGATTGCGGAC 57 10279677 10280062 AATTCCTCCACTATTTCTGC 57 NA Drosophila melanogaster 50 gcm2 FBgn0019809 FBtr0079838,FBtr0079837 1 2 2 82 2L 9611429 9611447 TAGCAAGGTTCTTAAGCGT 58 9611493 9611570 TGCCACAGGCATTATACTG 59 NA Drosophila melanogaster 50 CG7144 FBgn0025687 FBtr0079495 2 1 1 112 2L 7793321 7793518 CATTCAGTCGGCTATTATCG 58 7793228 7793246 AACTTCCCTCCATCTTGTG 59 NA Drosophila melanogaster 50 CG7211 FBgn0031941 FBtr0079481 2 1 1 60 2L 7747625 7747643 AAAGAAGTCCGGACTTTCC 59 7747667 7747685 GGTGACCAGAACATTTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6630 FBgn0031921 FBtr0079456 2 1 1 122 2L 7482821 7482900 CTTCCTAGCATATCGCCTG 59 7482717 7482736 ATATCCCTGCTTGGTAATGG 59 NA Drosophila melanogaster 50 CG4648 FBgn0031225 FBtr0078149 1 1 1 80 2L 147396 147414 ATCCGGTATTTCCACAGAC 59 145896 147352 TCTGTTTCGGTATCCACTG 58 NA Drosophila melanogaster 50 mt:tRNA:N FBgn0013701 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-137 FBgn0082181 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30209 FBgn0050209 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30212 FBgn0050212 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:P:35Bb FBgn0028911 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snmRNA:430:CR33729 FBgn0053729 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi18S-531 FBgn0083027 FBtr0113559 1 1 1 78 X 657227 657245 AGAGTGAGCTTTATGCGTC 59 657167 657187 CCCAAATAAAGAAGAGTGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pncr004:X FBgn0047095 FBtr0091949 2 1 1 61 X 19068744 19068763 TTGTTGTTTGATTTCGCGAG 59 19068702 19068722 ACCAACAGTCCATAGATTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40500 FBgn0069968 FBtr0111197,FBtr0111196,FBtr0111198,FBtr0111199 3 4 4 209 X 22282268 22282286 CAGTCTCAGGGACATTCAC 59 22282912 22282931 ATGACACAGATGTGATAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14615 FBgn0031184 FBtr0077369 2 1 1 61 X 21849845 21849863 ATTGTCGCTACTAACTGGC 59 21849802 21849820 AGATCTTTCTGGTACCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sep1 FBgn0011710 FBtr0077198,FBtr0077199 1 2 2 117 X 21230623 21230641 GAGTTCACCCTAATGGTGG 59 21230722 21230806 TTTGTTTCTCTATGGCGTC 57 NA DesignRelaxed Drosophila melanogaster 50 shakB FBgn0085387 FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572 1 5 5 80 X 20644230 20644248 CGCTAATATACAGGGTGGT 58 20643790 20644186 GACGCACTAACCTAAATCG 58 NA Drosophila melanogaster 50 Fim FBgn0024238 FBtr0074443,FBtr0074441,FBtr0074442 1 3 3 87 X 17182017 17182035 AACAACCATCCAGGATTGG 59 17181556 17181966 AATTGCGGTAGGTCTTCTC 59 NA Drosophila melanogaster 50 CG10598 FBgn0003057 FBtr0074400 2 1 1 138 X 17120018 17120036 TTAACGAAGGCTACTCTGG 58 17119898 17119916 ATTTACCAGCCCTTGTTCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9699 FBgn0030772 FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369 3 6 7 84 X 16588098 16588116 CATTGAGGCGGTTAAATGC 59 16580759 16580777 AAAGCCTATGTAATCGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 eas FBgn0000536 FBtr0074215 1 1 5 101 X 16175214 16175232 ATATTTGTTGAGGAGGCCG 59 16175295 16175480 TACCCTGATCTTAAACTCGAC 58 NA Drosophila melanogaster 50 Gbeta13F FBgn0001105 FBtr0074106 1 1 6 144 X 15754271 15755416 GTTAACACTGCGTAACACAG 59 15755523 15755614 CTCTTGTTAGATGGTGGCT 58 NA InUTR Drosophila melanogaster 50 Myb FBgn0002914 FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169,FBtr0074173 2 5 5 60 X 15749530 15749548 CCGAATACAATGCTCAGTC 58 15749488 15749507 GTTGAGAGCAATGACTTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14414 FBgn0030571 FBtr0073931,FBtr0073930,FBtr0073932 1 3 3 295 X 14475629 14475647 CAATGCGCTACTGAAACTG 59 14475980 14475998 CGCGATCCTTGTTAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32598 FBgn0052598 FBtr0073918 1 1 1 70 X 14210364 14210382 GATTCGCTGAGAAGTTTCG 58 14210312 14210332 AGGTAAATCGACTCCTTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Yippee FBgn0026749 FBtr0073789,FBtr0100168 3 2 2 60 X 13280865 13280884 AGTCAATTGATCAGTACCCG 59 13280758 13280776 CACGCTTAAACAGATAGGC 58 NA DesignNoJunction Drosophila melanogaster 50 Smr FBgn0024308 FBtr0073707,FBtr0073706,FBtr0073708 2 3 3 86 X 12604887 12604908 CAATTATCTTGGACAGAAGCTG 59 12604744 12604841 TTGGATTCACTAACATCCGA 58 NA Drosophila melanogaster 50 Tango4 FBgn0030365 FBtr0073622 3 1 1 63 X 11916286 11916304 CATAGTCCTCCATCCATCG 58 11916331 11916349 CCACTGCTTGATGTTATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cac FBgn0005563 FBtr0073589,FBtr0073588 3 2 10 127 X 11856268 11856287 GAAGATCATTGGATTCGGTG 58 11848305 11854113 TTGAGTTCGAATCATCGTG 57 NA Drosophila melanogaster 50 PhKgamma FBgn0011754 FBtr0090001,FBtr0090000 2 2 3 81 X 11592561 11592579 TCTAGTCGTTGATCCTTCG 58 11592624 11594665 ACCCATTAACACCATTTGG 57 NA Drosophila melanogaster 50 CG1637 FBgn0030245 FBtr0073406 2 1 3 75 X 10769194 10769282 GGAGAAGTTCAACTTCTCG 57 10769137 10769157 GAAGCTGTAGAACATGTTCTC 58 NA DesignRelaxed Drosophila melanogaster 50 Rph FBgn0030230 FBtr0071502 1 1 1 134 X 10644296 10644314 CAATGGCAAGATGCTTCTC 59 10644119 10644198 TTGAGTTGGATCTTGACGA 58 NA Drosophila melanogaster 50 CG17754 FBgn0030114 FBtr0071314,FBtr0071316,FBtr0071315 1 3 3 215 X 9148059 9148150 ATACCTGGACTCTGATCTG 57 9148329 9148347 GTATGACATTCGGAATCGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG12056 FBgn0030099 FBtr0071305 1 1 1 60 X 9087118 9087137 GATGTGTTAACCCTAAAGCC 58 9087160 9087178 GATAGAAATCCCGCCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bx42 FBgn0004856 FBtr0071350 2 1 1 267 X 8999666 8999684 CCCAGTACATTCGGTACAC 59 8999352 8999435 GGAATGGTGTAACCTTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG7766 FBgn0030087 FBtr0114595,FBtr0071351,FBtr0114594 3 3 5 111 X 8994627 8994645 ATGATCGACATCCTCAAGG 58 8992435 8994554 TCTTGTCCTGATCTAGATGGA 59 NA Drosophila melanogaster 50 CG4040 FBgn0030076 FBtr0071283 3 1 1 111 X 8946320 8946338 ATGCTGACCTATTTGGAGG 59 8946413 8946492 CACGGGTGATATGAATGTG 58 NA Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071271,FBtr0071270 3 2 10 102 X 8770413 8770432 GCGTGTAAAGAAGTATGTGG 58 8770084 8770349 TGATCCAGTCATATCATCGG 58 NA Drosophila melanogaster 50 Crag FBgn0025864 FBtr0071219,FBtr0071220 3 2 2 102 X 8488660 8488736 ACGAGGATTACGATGAGTC 58 8488802 8488820 ATAGCCTTGATCATGTGCA 59 NA Drosophila melanogaster 50 dec-1 FBgn0000427 FBtr0071147 1 1 3 60 X 7764241 7764259 AGGTAGATGAGATGTTGCG 59 7764015 7764033 TATTGTCTGAAATGCGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 dec-1 FBgn0000427 FBtr0071146,FBtr0071145 1 2 3 106 X 7764290 7764311 CCAGTCAATTCGTATCAAAGTC 59 7764007 7764223 TTCGGGTTTATTGTCCTGG 59 NA Drosophila melanogaster 50 CG32736 FBgn0052736 FBtr0071007,FBtr0071008 2 2 2 60 X 6905877 6905895 AAGAACTACGTGGAAGAGC 59 6905918 6905937 CTTAGTTGGTGTTATTCGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4542 FBgn0029906 FBtr0070970 3 1 1 102 X 6716154 6716235 GTGCCAAGAAACAAAGTCC 59 6716300 6716319 ATTAAGATGGCCTTCTCGTG 59 NA Drosophila melanogaster 50 pod1 FBgn0029903 FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966 1 5 6 106 X 6701674 6702856 CAATTATTCCACGTTTGGGT 58 6702925 6702943 GATATTCTCGTGGGATCCC 58 NA Drosophila melanogaster 50 pod1 FBgn0029903 FBtr0070965,FBtr0070968,FBtr0070967,FBtr0112956,FBtr0070964,FBtr0070966 2 6 6 80 X 6700769 6700787 GTTTGATGTACTCCACAGC 58 6700828 6700925 GCTCATTGTTCGAGAATATCTC 59 NA Drosophila melanogaster 50 Marf FBgn0029870 FBtr0070909,FBtr0070910 3 2 3 125 X 6263369 6263388 CTGGAGTTTAAGTTCAGCTG 58 6263476 6263563 TACGCTGTGTCCAATACTG 59 NA Drosophila melanogaster 50 CG15771 FBgn0029801 FBtr0070809,FBtr0070810 3 2 2 148 X 5652315 5652334 AACTTTCTCAATGTCAAGCC 58 5652502 5652520 ACATCCTCTAGCGATTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11473 FBgn0029779 FBtr0070857 2 1 1 73 X 5524057 5524078 CCATTATTGTGGGATTCATCAG 59 5523727 5523745 GATGTCGTTCAGATTGGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6133 FBgn0026079 FBtr0070669 1 1 1 153 X 4005692 4005710 GAAGAAGGAAACCCAGGAG 59 4005499 4005517 GAGAATGTGGATGGTCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12206 FBgn0029662 FBtr0070528,FBtr0070529,FBtr0070527 2 3 3 153 X 3360229 3360310 CGTATAAATCGATTGCCACG 59 3360095 3360113 ACTTCATCGCAATTCATGC 59 NA Drosophila melanogaster 50 Vinc FBgn0004397 FBtr0070420 3 1 1 165 X 2114541 2116266 AACTCACTACAGATCTGGC 58 2112117 2114412 CAGACGAGATACCTGTTGG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 Adar FBgn0026086 FBtr0070299,FBtr0100557,FBtr0070300 1 3 3 60 X 1677570 1677590 CAAAGTAACCACTGACTATGG 58 1677612 1677697 CTTTGCGATCTGATAGTCC 57 NA DesignRelaxed Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0110927 1 1 5 60 X 938203 938222 AGGAGGAAGATCAAGTTCAG 58 938245 938263 TATATTGTGAGAGTGCCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mod(r) FBgn0016038 FBtr0089724,FBtr0089723 1 2 4 98 X 516384 516490 ATATCAGGATTGCAGCTTCC 59 516551 516569 ACGTGTTGAGGAAAGTCTG 59 NA Drosophila melanogaster 50 CG40748 FBgn0085513 FBtr0113926 1 1 1 60 U 8192488 8192507 CACAGTAACTAAGAAGCGTG 58 8192447 8192468 GCTTTCATTCATTAGCTTCTGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41576 FBgn0085702 FBtr0114151 2 1 1 60 U 6401116 6401136 GTAGTGATTCCATGATAAGCG 58 6401157 6401176 GAAGCAGTTCAAGACAAGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG41529 FBgn0085671 FBtr0114118,FBtr0114119 2 2 2 65 U 3832285 3832303 CAATTGGTTTGACCTGCTC 59 3832331 3832350 AGCTTCTGGTTGAGATTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40629 FBgn0085505 FBtr0113918 3 1 2 168 U 2572813 2572831 AACTACACTTACCGTCTGC 59 2573004 2573022 CATTAAGGCCTTCTGATGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG41310 FBgn0085606 FBtr0114050 1 1 1 60 U 1971709 1971727 GCATTGTCACTCCTAATGG 58 1971748 1971769 CAGCGCAGATATGATTTATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Caps FBgn0053653 FBtr0091630,FBtr0091632 1 2 3 125 4 1254595 1257735 GAACATTACGGAGAACTGC 58 1257824 1257842 AATGAGTCCAGTACTGTCG 58 NA Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211 1 4 7 180 4 1080191 1080209 CAACACAACCTCTCAACAG 58 1079962 1080047 TGAGAAGAGTCCATTGCAG 59 NA Drosophila melanogaster 50 CaMKI FBgn0016126 FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065 2 6 7 96 4 467853 470559 TTTGAGAAGGTTCAGTGCA 59 470889 470910 CTCATACGTTTCTAAGAGTTGC 59 NA Drosophila melanogaster 50 CG2177 FBgn0039902 FBtr0114519,FBtr0089132,FBtr0089133 1 3 3 78 4 333993 334011 AACTCTTGGATTGGTTGTG 57 333875 333893 AACGTCTTGATGGCTAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 pan FBgn0085432 FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156 3 9 10 81 4 103362 106346 TCCTAAGATGGGCTTAACTC 58 106387 106408 CATATCTGAACTTAGCATTGGG 58 NA Drosophila melanogaster 50 Hsromega FBgn0001234 FBtr0084059,FBtr0084057,FBtr0084058 1 3 3 60 3R 17123843 17123862 CTATCATCGAACAAGTTCCG 58 17123885 17123903 GAACGTAATATGCTGCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2053 FBgn0039887 FBtr0085873 1 1 1 60 3R 27864626 27864647 GTCTACTGAAATCAGATCATCC 58 27864668 27864686 GGAATTAATTCAGTGCCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1746 FBgn0039830 FBtr0085773,FBtr0085774,FBtr0085772 3 3 3 209 3R 27043629 27043647 AGTACTTGCGACCATTGAG 59 27042876 27042895 CGAATACTGTTCCGATACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG15556 FBgn0039821 FBtr0085737 3 1 1 60 3R 26955067 26955086 CCAACTGAAGAGAAAGGGAG 59 26955026 26955047 GAGTGAATCTCGAGTATAGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15549 FBgn0039810 FBtr0085752 2 1 1 68 3R 26762120 26762139 AATTATCCCTCGGATTTGGG 59 26762071 26762089 GATGTCAGTTCGATCCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sap-r FBgn0000416 FBtr0085714,FBtr0085713 3 2 2 80 3R 26710365 26710453 ATCTGGATGATCTCGAAGTG 58 26710304 26710322 TGCTAGACAGCTTGTTGTC 59 NA Drosophila melanogaster 50 CG15533 FBgn0039768 FBtr0085626 3 1 1 118 3R 26256511 26256607 GAATTGATGAGAAAGTACTGGC 59 26256686 26256704 GAATTGATGGTCACAGCAG 58 NA Drosophila melanogaster 50 RpS7 FBgn0039757 FBtr0089423,FBtr0089425,FBtr0089422 1 3 4 69 3R 26032436 26033825 TTGAACACAAAGTCGACAC 58 26032385 26032403 AATTCGAAGGTAACATCGC 58 NA DesignRelaxed Drosophila melanogaster 50 Ice FBgn0019972 FBtr0085482 2 1 1 63 3R 25626176 25626194 ACATCTGGAGCTTCTTCAC 59 25626221 25626239 AAGAACAACTTGGGTTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alph FBgn0086361 FBtr0085446,FBtr0085442,FBtr0085445 3 3 5 167 3R 25422971 25422990 GAGTCTAGCAAGATAACCGA 58 25423191 25423900 CTAATGCGTTGGACTTTCAC 59 NA Drosophila melanogaster 50 Ptp99A FBgn0004369 FBtr0100523,FBtr0085423,FBtr0085422,FBtr0110981 1 4 5 107 3R 25297478 25297496 ATGTGTTCCACATACACGA 58 25297567 25298890 TGTAGGGTCGTAAGTTCTG 58 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 1 8 8 120 3R 24962131 24962214 CCAATGATAAGCCCTACTCC 59 24962294 24962315 CCCATGAACATATAGGTTTCAC 58 NA Drosophila melanogaster 50 Gr98b FBgn0046887 FBtr0085186 2 1 1 138 3R 23369224 23369300 TGCATAAATGCGTACAACTG 59 23369401 23369419 ATGTGAAACGCAACTTCAG 58 NA Drosophila melanogaster 50 CG34293 FBgn0085322 FBtr0112489 1 1 1 60 3R 22991070 22991089 GATTCTTTCTGGTGATGCTG 58 22991029 22991050 TAGTTGGGAAGATACATGAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spz FBgn0003495 FBtr0112834 2 1 12 81 3R 22892915 22893094 TCTAATCACTTACAGTACGAGG 58 22892855 22892873 CAACTCCCTCATCATTGGT 59 NA Drosophila melanogaster 50 CG34129 FBgn0083965 FBtr0110870 1 1 1 60 3R 22016589 22016608 CGATAGGGAGAACTATGCTG 59 22016548 22016568 CTGGTAGATAAATTTCTCGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5948 FBgn0039386 FBtr0084939 1 1 1 80 3R 21722408 21722493 CAGTTTCCCAATAACTTTCTCG 59 21722532 21722552 CAGGTAAATGCTCTGAAAGAC 58 NA Drosophila melanogaster 50 CG17370 FBgn0039381 FBtr0084909,FBtr0084910,FBtr0084911 3 3 3 90 3R 21711544 21711628 GGAACCAACGGATAAATTCG 59 21711680 21711699 GAAGAACATGATGAGCAGTG 58 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100632,FBtr0100636,FBtr0100637 2 3 17 92 3R 20521093 20521111 GGACATTAAGGACGAGACG 59 20521837 20528849 CGATTGAGTACTAAGTCATCGA 59 NA Drosophila melanogaster 50 mld FBgn0083077 FBtr0111013,FBtr0111012 2 2 2 148 3R 20445690 20445708 ACAAGAAGTGCTACAGCAG 59 20445820 20445903 GCATTTCCACTGTTGATGG 59 NA Nonspecific Drosophila melanogaster 50 CG13622 FBgn0039202 FBtr0084680 3 1 1 62 3R 20348697 20348715 GTCAGGGTCAGGTTTACAG 59 20348653 20348671 GTTTGGGATACTGAACTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 jar FBgn0011225 FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173 1 4 6 85 3R 20079843 20080373 CCCAAACAAATTGATCAGATCC 59 20079779 20079797 ACTTCCACTTGGACAAGTC 59 NA Drosophila melanogaster 50 CG5669 FBgn0039169 FBtr0084565 1 1 1 60 3R 20050915 20050933 CCAATCTTCAGGCTTTACC 58 20050873 20050892 TGAATGATTTGCACTTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13606 FBgn0039161 FBtr0084553 2 1 2 143 3R 20006410 20006428 AATGCGAACCTCTTTAAGC 58 20006535 20006553 ACACGACTACATATTGCAC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG18428 FBgn0039149 FBtr0084543 2 1 1 68 3R 19935512 19935530 GAGATTGTGACCAAAGAGC 58 19935562 19935580 GTAGAACTCTCCATCACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33108 FBgn0053108 FBtr0084504 2 1 1 60 3R 19822899 19822918 TTGTAGGTTATCTGGTGGAC 58 19822999 19823017 GATTTACCATGACGAGCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG5854 FBgn0039130 FBtr0084495,FBtr0084494 3 2 2 67 3R 19760640 19760754 ATAAGCGCTATTTGATGCC 58 19760784 19760803 CTTCATTGTCTCGTTCAGGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG31142 FBgn0047114 FBtr0084492 1 1 1 69 3R 19755345 19755363 AGTGCCTTCTATGAAACCA 58 19755396 19755414 CTTCTCGTTCTGCATTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31414 FBgn0051414 FBtr0113405 1 1 1 89 3R 19531434 19531507 CAGGATCATGTCTATAGATCCT 58 19531557 19531575 CATATCAAAGTCGGAACCG 58 NA Drosophila melanogaster 50 CG4434 FBgn0039071 FBtr0084382 3 1 1 83 3R 19114374 19114395 TCTACATCCGAGCTTATTATCG 59 19114251 19114333 TATGTTCGGTAGTTGACTATCG 59 NA Drosophila melanogaster 50 CG13837 FBgn0039042 FBtr0084345 1 1 1 60 3R 18869925 18869943 TGTTTGGATCGAAAGTTGG 58 18869966 18869985 GGGATTTAGTGGTTATGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13838 FBgn0039041 FBtr0084344 2 1 1 77 3R 18868126 18868144 TTTCGATGACCTCATCGAG 59 18868185 18868203 TTTAGGTCATCCAAGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 loco FBgn0020278 FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273 1 4 4 85 3R 18446567 18446653 AGCACCAAGATGAACTACTC 59 18446501 18446519 GTCGAAGTTGATTTCGGTG 59 NA Drosophila melanogaster 50 CG33107 FBgn0053107 FBtr0084279 1 1 1 107 3R 18410052 18410070 ATGATGACGTACCAAAGGG 59 18409905 18409981 GTAGAACATCTCCTCCGAG 58 NA Drosophila melanogaster 50 PyK FBgn0003178 FBtr0084213,FBtr0084214 1 2 2 191 3R 18197875 18197951 CACTCATCTACAAGGAGCC 59 18198191 18198210 GCAGAATTTATTCGACGGTG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG6455 FBgn0019960 FBtr0084189,FBtr0084188 3 2 2 129 3R 17847610 17847628 CAAGCCTAAGGATAATCCG 57 17847439 17847517 GACATCGTCATTAAAGCCT 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG5849 FBgn0038897 FBtr0084125 1 1 1 80 3R 17568321 17568339 AAGATGTTTCATCACGCCT 59 17568380 17568476 CACGCTATAACGATATTTCTCC 58 NA Drosophila melanogaster 50 Rab11 FBgn0015790 FBtr0084010,FBtr0084011 2 2 2 77 3R 16940758 16940776 GTTTCATAGAAACCTCGGC 58 16940817 16940984 TGCGATAGATCTCTGTGAG 58 NA DesignRelaxed Drosophila melanogaster 50 Cortactin FBgn0025865 FBtr0084039 1 1 1 98 3R 16889218 16889236 CAAATTTGGAGTGCAGTCC 59 16889047 16889158 TTGGAGTAATCCTTCTGAGAC 58 NA Drosophila melanogaster 50 Atpalpha FBgn0002921 FBtr0089510,FBtr0089513,FBtr0089515,FBtr0089514,FBtr0089509,FBtr0089512,FBtr0089516,FBtr0089511 3 8 8 107 3R 16799059 16799235 GTCAAGAATGGACCTACCG 59 16799305 16799324 TCTTGCAGATGATCAGATCG 59 NA Drosophila melanogaster 50 CG17838 FBgn0038826 FBtr0083962,FBtr0113256,FBtr0083959,FBtr0083963,FBtr0083958,FBtr0083961 1 6 8 80 3R 16618211 16618229 CACAAATCGTGGTTATGCA 58 16618273 16619451 TCGTGATTATCGAGCTGTC 59 NA Drosophila melanogaster 50 CG31199 FBgn0051199 FBtr0083930 1 1 1 60 3R 16568866 16568884 ACGTTTGTAGTAGCTGGTC 59 16568824 16568844 TGTTTACCCAGGTCTTTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4390 FBgn0038771 FBtr0083836,FBtr0083837 3 2 2 60 3R 15882338 15882356 CAATGATCACATCCAGACC 57 15882296 15882314 GTAGAAGTAGCTGTGATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31220 FBgn0051220 FBtr0083782 3 1 1 60 3R 15475843 15475864 ATATACGATGGCTTACTATCCG 59 15475883 15475903 GAATTTCATCAGTGACCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31245 FBgn0051245 FBtr0083773 3 1 1 61 3R 15202703 15202721 GAAACTCGAGACCCAAGTC 59 15202660 15202678 CCATCTAGTAGGTTCCGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3773 FBgn0038692 FBtr0083737 2 1 1 193 3R 15055968 15055986 TTTATGCCATTCCGAACCA 59 15056143 15056217 ATGCGAACCTCCTTTACTC 59 NA Drosophila melanogaster 50 CG7670 FBgn0038608 FBtr0083586 2 1 1 84 3R 14191451 14191469 TAATACGCCAAAGCAAACG 59 14191324 14191404 CTTCTCAGTCACATCTGGAG 59 NA Drosophila melanogaster 50 CG14322 FBgn0038532 FBtr0083476 2 1 1 128 3R 13494448 13494530 CAATTGGAGTTTGTTTCTGG 57 13494619 13494639 GTTCAGGACGTAAATATAGCC 58 NA Drosophila melanogaster 50 CG31190 FBgn0051190 FBtr0089444,FBtr0113397,FBtr0089443 3 3 4 90 3R 13307713 13307894 ATTGTTACCTGGCAGATCC 59 13307641 13307659 TGATGTTCTGCTTCTCCTC 58 NA Drosophila melanogaster 50 ss FBgn0003513 FBtr0083318 2 1 1 193 3R 12216469 12216487 AGCATTCTAAGGCTGTCTG 59 12205504 12209707 AGAAATCCATTTAGGGCCTG 59 NA Drosophila melanogaster 50 CG5013 FBgn0038396 FBtr0083223 2 1 1 79 3R 11875934 11875952 TTGATATCGATGTGGTGGG 59 11875995 11876013 AATGATAAGGTCCAGAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083209,FBtr0083210,FBtr0083205,FBtr0083204 1 8 8 80 3R 11780339 11780357 TGGATCCTTCTTGTCATCG 59 11780398 11780482 GAGTCGAGAATGGTATTATCCT 58 NA Drosophila melanogaster 50 Rh6 FBgn0019940 FBtr0083146 3 1 1 60 3R 11309218 11309239 TGTGATGTACATCTTTACCTCG 59 11309260 11309278 GACCACAAACATGTTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34316 FBgn0085345 FBtr0112514,FBtr0112515 2 2 2 60 3R 11056768 11056786 GATCCTTGGCCTATATCCT 57 11056810 11056894 TTTGTAATGGAGGTTTCGG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG3563 FBgn0038259 FBtr0082989,FBtr0113234,FBtr0082988 3 3 3 125 3R 10616865 10616883 GTTACAGTAGTGCCTCGAC 59 10616970 10619180 GATAAGTGGCTTGTATCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9611 FBgn0028487 FBtr0112937,FBtr0112938 1 2 5 135 3R 9522484 9522560 CTTTCCGGATAGCTTTCAC 58 9522367 9522385 GCGATCATATTCCTGACAG 57 NA Drosophila melanogaster 50 CG18616 FBgn0028495 FBtr0082643 1 1 1 157 3R 8458166 8458184 TCAGCCTAGAGTCTTTGGA 59 8458303 8458388 CATGTGACCTAGCAATTTGTG 59 NA Drosophila melanogaster 50 CG5844 FBgn0038049 FBtr0082591 1 1 1 166 3R 8259974 8259992 AAATTTGGAGGTCTGTTGG 57 8260193 8260211 AGCGTGATGTTCTTATCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG33098 FBgn0053098 FBtr0082579,FBtr0082578 3 2 3 156 3R 8213833 8213851 CTCGACTATGAAGCCTTCG 59 8214033 8214051 TGTCACCATAGTTGGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17360 FBgn0037949 FBtr0082531 2 1 1 80 3R 7608083 7608163 CAGTAGCTTAATGGGTTCCA 59 7608022 7608040 GTAGGCGTAGAGCTTAACG 59 NA Drosophila melanogaster 50 CG6923 FBgn0037944 FBtr0082432,FBtr0082433 3 2 2 109 3R 7571158 7571176 CTACTCACCACTGCATCTG 59 7571003 7571088 GCTCAATAGTTTCCAAAGTAGC 59 NA Drosophila melanogaster 50 CG12594 FBgn0037941 FBtr0082429 1 1 1 80 3R 7556032 7556111 CATTAAGGGCTAAGAACGAC 58 7556152 7556172 CCTCCAGATAAAGATTGTGAG 57 NA Drosophila melanogaster 50 KP78b FBgn0026063 FBtr0082408 2 1 1 60 3R 7173530 7173551 GTCTGCTATTGAATACTGTCAC 58 7173491 7173510 GTTCTCTGCCTTTAGATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17184 FBgn0037884 FBtr0082364,FBtr0082363 1 2 2 92 3R 7059704 7059722 TTATTTCGTCGGTGAACAC 58 7059279 7059648 CATCGAATTCGATTCTGGC 59 NA Drosophila melanogaster 50 CG14687 FBgn0037835 FBtr0082280 3 1 1 67 3R 6618942 6618961 AGAACAATACGGGAAATCCC 59 6618991 6619009 TTTACCACCATTCTCGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Crc FBgn0005585 FBtr0082103 1 1 1 106 3R 5456247 5456265 GGATACGTGGATCTACAGC 59 5455891 5456177 AGGTCTGAATGCCTTTGTC 59 NA Drosophila melanogaster 50 neur FBgn0002932 FBtr0082001,FBtr0082002,FBtr0082004,FBtr0082003 2 4 4 222 3R 4847925 4847943 CGATATAAACGGCCAACTC 58 4847659 4847677 ATTCTCGTAGCAGATGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11984 FBgn0037655 FBtr0082008,FBtr0082009,FBtr0082007 3 3 3 165 3R 4837857 4837875 CATTGCGGAACTGTTATCG 59 4837615 4837633 CGATGTTGAGACTATGGGA 58 NA DesignNoJunction Drosophila melanogaster 50 pyd FBgn0003177 FBtr0089782,FBtr0089781,FBtr0114459 1 3 8 81 3R 4660660 4661006 CATATACGGTACCCTACGAC 58 4660598 4660616 TAGATGCTGTACTTGCTGG 59 NA Drosophila melanogaster 50 CG8359 FBgn0037634 FBtr0081919 1 1 1 60 3R 4632612 4632633 CAAGAATCGAATATTGAGCCTG 59 4632653 4632672 CCGTATTTATGTTGCTTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8007 FBgn0037600 FBtr0081877 2 1 2 66 3R 4448078 4448096 CAACGGATACGGATCTCAG 59 4448126 4448213 TCCTTTATGCTGGAATCGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31463 FBgn0051463 FBtr0081831 1 1 1 60 3R 4118759 4118777 CTTGGTAATGCGCATTCAG 59 4118801 4118819 GACATTGCGTTTAACCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7891 FBgn0037551 FBtr0081794 3 1 1 80 3R 3954138 3954224 GAACGAATGAATCTATCGAGC 58 3954265 3954284 GTCAATGTTGTCCTTCTCCT 59 NA Drosophila melanogaster 50 CG7891 FBgn0037551 FBtr0081794 1 1 1 80 3R 3954137 3954223 CGAACGAATGAATCTATCGAG 58 3954265 3954283 TCAATGTTGTCCTTCTCCT 58 NA Drosophila melanogaster 50 CG3014 FBgn0037519 FBtr0081773 1 1 1 78 3R 3626412 3626430 ACCATCTTACGACAGTTGC 59 3625649 3625669 GTTACTCCCTAATGTTTGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG1234 FBgn0037489 FBtr0081599 1 1 1 146 3R 3070186 3070260 ATTGGCAAACTTACCTCCC 59 3070058 3070076 CTCCTGTTTGAAGTCCGAG 59 NA Drosophila melanogaster 50 Alh FBgn0037471 FBtr0081613,FBtr0113199,FBtr0081612,FBtr0081614,FBtr0081615 3 5 6 153 3R 2926915 2926936 GAAGATCAGCTATGAGAAACAG 58 2925169 2925187 GACCAAGGGAGATGTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 lab FBgn0002522 FBtr0081696 1 1 1 71 3R 2488344 2488362 CTTCAATCGCTACTTGACG 58 2488046 2488309 ACCTGCGTTTCATTAAGCT 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG1213 FBgn0037387 FBtr0078643,FBtr0078642,FBtr0078644 1 3 3 64 3R 1671125 1671143 GATGCAGCTCTTCATTGTG 59 1671243 1671261 GGTATGAAACATACGGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 MTA1-like FBgn0027951 FBtr0078734,FBtr0078733 2 2 2 91 3R 1466845 1466863 GCTCACAATAATTCCCACG 58 1466659 1466793 GAACTATAGTAACTTCAGTGCC 58 NA Drosophila melanogaster 50 CG2911 FBgn0037350 FBtr0113194,FBtr0078740 3 2 2 77 3R 1448312 1448330 ACTACAATGTCATCCCGAC 59 1448253 1448271 TTGAAGTCACTGTTCTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34277 FBgn0085306 FBtr0112472 2 1 1 60 3R 1196912 1196930 TATCTAGCTCCAAGCAGTC 58 1196954 1196972 GAGAATATCCGGATGGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 uta FBgn0037302 FBtr0078825 2 1 2 86 3R 1062622 1062640 GTCTTAGTCAAGGAGTGGG 58 1062348 1062366 CATTACCATGAAACCAGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11739 FBgn0037239 FBtr0078915,FBtr0078913,FBtr0078916,FBtr0078914 2 4 4 80 3R 205702 205720 CAATCAGACATTCAACGCC 59 205764 205845 GAGGTAACTAGTTGCTGCT 58 NA Drosophila melanogaster 50 snoRNA:Me18S-A1806 FBgn0086074 FBtr0114350 2 1 1 60 3L 7632831 7632849 AACTTTACTACCCGAACCA 58 7632870 7632891 ATCAGAATTACGTCCCTTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12460 FBgn0040045 FBtr0111161 2 1 1 213 3L 24527969 24527987 TGATCCAGGATTCAGAGGT 59 24528267 24528317 AGATTTCTCACCATTCGCA 59 NA DesignRelaxed Drosophila melanogaster 50 Arf79F FBgn0010348 FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572 1 6 7 81 3L 22862819 22862837 CTTTACAGTGTGGGATGTG 58 22862563 22862777 GATAAGACCTTGTGTATTCTGG 58 NA Drosophila melanogaster 50 CG7611 FBgn0037094 FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362 1 8 8 84 3L 21519967 21519985 TAAACAGCATAGCCTTTCG 57 21520031 21520298 CTATCAAAGTTGTACCCTCTG 57 NA Drosophila melanogaster 50 Neu2 FBgn0037085 FBtr0078394 2 1 1 60 3L 21482780 21482801 GGCAATGAACCTGATATTAACG 59 21482741 21482759 AGCTAAAGCCTGGTTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10512 FBgn0037057 FBtr0078297,FBtr0078300,FBtr0078298 1 3 4 296 3L 21199477 21199495 GATGCCATTAGGAGGATCC 59 21200564 21200582 TTCTTCTCCTTGTCTCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33056 FBgn0053056 FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311 3 5 5 132 3L 21191820 21191990 GGAACATATGAGGGAGCAC 59 21191706 21191726 AATTATGTCCACGCTATCCTC 59 NA Drosophila melanogaster 50 CG33056 FBgn0053056 FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311 1 5 5 111 3L 21192061 21192083 GGATGGTAGACATATCTACAACC 59 21191820 21191990 GTGCTCCCTCATATGTTCC 59 NA Drosophila melanogaster 50 CG34000 FBgn0054000 FBtr0100055 3 1 1 60 3L 20981573 20981593 TCCTAATGCACTACACTAACC 59 20981533 20981552 TCGGGAGTCGATAAATTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3947 FBgn0037019 FBtr0078278 1 1 1 60 3L 20770716 20770734 AACAGAGGAAGAATTCGGG 59 20770674 20770692 TGGGACTGCAATAAATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 knrl FBgn0001323 FBtr0078212 2 1 1 139 3L 20595360 20610496 CCATATGCGATGAATCAGAC 58 20593028 20593046 TTCTTGCAGTCGGATATCG 59 NA Drosophila melanogaster 50 fbl FBgn0011205 FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188 3 4 5 150 3L 20381809 20381827 CAAGCTGGTCTACTTCGAG 59 20381940 20383027 GACATTGTCCATCTGTAGGT 59 NA Drosophila melanogaster 50 CG5618 FBgn0036975 FBtr0078179 2 1 2 131 3L 20347970 20347989 AGGTGATCCATTACTCTGTG 58 20348083 20348418 CTTCGTAGGTGTATGTGCT 59 NA Drosophila melanogaster 50 rdgC FBgn0004366 FBtr0074834,FBtr0074832,FBtr0074833,FBtr0074835 1 4 4 80 3L 20256764 20256782 ATGGATGCTTTGTATGCCA 59 20256823 20256905 GGTAATTTCGCCTGAATTATCG 59 NA Drosophila melanogaster 50 CG17233 FBgn0036958 FBtr0074852,FBtr0074851,FBtr0074850 3 3 3 66 3L 20228040 20228058 GGAAAGACCTTCTATCGCA 59 20227932 20227953 GGTAGAGTTTCTTAGTTTCGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6981 FBgn0036945 FBtr0074821,FBtr0074820 1 2 2 96 3L 20182279 20182428 AACATAAGGGAGAGCTGTG 58 20182488 20182506 TAACCCTTCCAGTAGTGGA 59 NA Drosophila melanogaster 50 obst-J FBgn0036940 FBtr0074866 1 1 1 60 3L 20123740 20123758 GGCTAATGACAAACTTCCA 57 20123698 20123716 CGAGAACTTATCGTAGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32213 FBgn0052213 FBtr0074931 1 1 1 208 3L 19469226 19469244 TACAATGGAATCGCCTCTG 59 19469416 19469434 ATGAGAAATGGTGCAGGAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10419 FBgn0036850 FBtr0075032 2 1 1 60 3L 19093033 19093054 GATGAGCAAGTTAAATCCTTCC 59 19092994 19093013 ACTCCTTACGAAGAACTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rad9 FBgn0025807 FBtr0075080,FBtr0112917 1 2 2 88 3L 18864945 18865071 TGCCGAATATAATCCGTGG 59 18864875 18864893 TGCCTCCAAAGTAAGTTCC 59 NA Drosophila melanogaster 50 CG18811 FBgn0042134 FBtr0075098 3 1 1 176 3L 18664681 18664699 CCAAATACGATGCTGTCCT 59 18664468 18664486 GCACGTTCTGAATGATCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Msi FBgn0043025 FBtr0075192,FBtr0110847,FBtr0110846 3 3 3 100 3L 17748770 17748791 CTAGGAACTTAAATGACAGTCG 58 17748632 17748652 GGTGTTAAGATCAAATCCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9706 FBgn0036662 FBtr0075326 1 1 2 167 3L 16777687 16777705 AACACATTGTGCAATCTGG 58 16778001 16778019 ATCGAAGGTTATCTCGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4998 FBgn0036612 FBtr0075377 1 1 2 147 3L 16335188 16335206 AATGCTACCACTACTGCTG 59 16336894 16336912 GGTTTCCATAATAGGCACG 58 NA DesignNoJunction Drosophila melanogaster 50 Eig71Ef FBgn0004593 FBtr0075584 2 1 1 63 3L 15650361 15650379 AAGTTAAGGGACACTTGCA 59 15650316 15650335 ACTCCACATTATTGATGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7945 FBgn0036505 FBtr0075600 3 1 3 128 3L 15516169 15516187 TCATTTGCAAGACCTGAGG 59 15515672 15516078 TTAAATGGTCTGTCCAGAGC 59 NA Drosophila melanogaster 50 Tollo FBgn0029114 FBtr0075607 1 1 1 60 3L 15230429 15230449 GAAGAATCTACTTGTGCTCTC 58 15230471 15230489 GGATCTCTGATCCATTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17364 FBgn0036391 FBtr0075789,FBtr0075788 1 2 2 91 3L 13976266 13976284 TCAGCAAGACGAAGTATCC 59 13975942 13976211 AAGCGGTATTCCTGTATCG 59 NA Drosophila melanogaster 50 CG32135 FBgn0052135 FBtr0075760 2 1 1 60 3L 13961104 13961125 GAGATATCATCGGATACTCTGG 59 13961145 13961164 AAGTCTGCAATACGAATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9028 FBgn0036389 FBtr0075759 2 1 1 182 3L 13961789 13961865 GGAATCTGGATTTCAGCCA 59 13962011 13962029 GTTCAGTGTTCATGGAGGA 59 NA Drosophila melanogaster 50 CG14131 FBgn0036205 FBtr0076028 2 1 1 96 3L 11771330 11771348 GATACTGCTGTCCATGGAG 59 11771407 11771539 TGATGAAGTTGTTCCCTGTC 59 NA Drosophila melanogaster 50 CG33270 FBgn0053270 FBtr0076149 1 1 1 79 3L 11571587 11571605 GCTTCATCTGCTAGTACCA 58 11571526 11571544 GTTGTTGTCGTTGATGCTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33267 FBgn0053267 FBtr0089845 3 1 1 156 3L 11557914 11557932 ACCACAACCACAACTACAG 59 11565621 11565639 TGCGCTTATAGTGGATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12289 FBgn0036160 FBtr0076178,FBtr0076179 3 2 2 60 3L 11450911 11450929 TGATACGCCTAATCCTCGA 59 11450869 11450887 GATACCACTATCCGATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6175 FBgn0036152 FBtr0076183 1 1 1 137 3L 11284161 11284179 AATTACTGCAACATCAGCG 58 11282659 11282677 GTGGTTGTACGTTAGGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6327 FBgn0036115 FBtr0076244,FBtr0076243,FBtr0076246 3 3 4 175 3L 11032852 11033105 CAATCCAAGTTCATACGTTCG 59 11031514 11031534 TGTACAAATGTCTCGAGATCC 59 NA Drosophila melanogaster 50 CG12362 FBgn0036082 FBtr0076282,FBtr0076281 1 2 2 60 3L 10407208 10407227 AAATATCGCTCTTCAATGGC 58 10407250 10407268 GCATGTGGTTGCTATAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gap1 FBgn0004390 FBtr0076368,FBtr0076367 2 2 2 89 3L 9835629 9835647 TCTGTGATATACCGCTCCA 59 9834654 9835577 TGTGCACAATCTTAAAGCAG 59 NA Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076321,FBtr0076319,FBtr0076323 2 4 11 114 3L 9774994 9775718 CTACCTGGGTAATTTGTCTG 57 9775795 9775813 CATATCGTCCTTCATGTCG 57 NA Drosophila melanogaster 50 CG5194 FBgn0035955 FBtr0076548 1 1 1 115 3L 9002144 9002162 TTCTGACAAGAAGGATCCG 58 9001997 9002015 ATGGTGGTATGGGAATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Cp16 FBgn0000356 FBtr0076574 2 1 1 183 3L 8725292 8725310 GACTGGAATTCCCTCAACC 59 8725591 8725609 TCTTCAGGTACGCATTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7112 FBgn0035879 FBtr0113153,FBtr0076605 3 2 2 81 3L 8343179 8343256 GCTCCTTCATATGCCTGAG 59 8343301 8343319 TTTGTAGAGATCACGGAGC 59 NA Drosophila melanogaster 50 CG33275 FBgn0035802 FBtr0089849,FBtr0089850 1 2 3 91 3L 7612960 7613371 TCTATTTACCAGGCACACG 59 7613426 7613444 TTCATAGCAATTGATGCCG 58 NA Drosophila melanogaster 50 CG7526 FBgn0035798 FBtr0076799,FBtr0076800 3 2 2 98 3L 7562064 7562181 ATATACGTCAGATCTGCCA 57 7562242 7562261 ATAGGTTTGTGAAACATCGG 58 NA Drosophila melanogaster 50 lqf FBgn0028582 FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794 3 6 6 87 3L 7527257 7527345 GGATTTCAAGGATCCAAACG 59 7527392 7527413 AGAAATATCCAGCAGATCTAGC 59 NA Drosophila melanogaster 50 lqf FBgn0028582 FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794 2 6 6 86 3L 7527258 7527346 GATTTCAAGGATCCAAACGG 59 7527392 7527413 AGAAATATCCAGCAGATCTAGC 59 NA Drosophila melanogaster 50 CG8641 FBgn0035733 FBtr0076931 2 1 1 120 3L 7053961 7053981 CGGGAAATAAATGTGATCGAG 59 7053748 7053766 ATGCGGTAATTCTGACGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13298 FBgn0035692 FBtr0077015 2 1 1 93 3L 6185897 6185916 GACATATTCGGCAAATTTGG 57 6185757 6185775 AAATGTCCTCGTAGACGAC 59 NA DesignNoJunction Drosophila melanogaster 50 D19B FBgn0022699 FBtr0077017 2 1 1 89 3L 6177480 6177498 TCTTCAAGATGCTCGAGTC 59 6177409 6177427 AGTCATCCTGAGATACTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jon65Aiii FBgn0035665 FBtr0077041 1 1 1 60 3L 6044471 6044489 CTAACACTCTGCAGTACGA 58 6044513 6044531 TAAGTGTTCTGGCATTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5537 FBgn0035639 FBtr0077112 1 1 1 197 3L 5804898 5804916 TCCAATCTCTTCTGCACAC 59 5805074 5805180 GTGTCTCAAATGCAATCTATCC 59 NA InUTR Drosophila melanogaster 50 Sucb FBgn0029118 FBtr0077135 1 1 2 175 3L 5556421 5556439 GTATGGAGTGGCCATACAG 59 5556183 5556201 ACTTGGTGGTGATATGGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10673 FBgn0035590 FBtr0077180 3 1 1 63 3L 5132213 5132231 CCCACAAGCTGTATATGGA 58 5132168 5132186 GTTTCCTGGATGAACTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acp63F FBgn0015585 FBtr0073182 3 1 1 93 3L 3816160 3816179 CCCGATTGTAACTTAGATGG 57 3816032 3816105 TTAGTTCGATGAATCCTGGT 58 NA Drosophila melanogaster 50 kst FBgn0004167 FBtr0112840 1 1 4 127 3L 3358074 3358092 AGATAATGCAGACAAGCTG 57 3358240 3358276 GGAAATCCTTTGAAGGCTC 58 NA Drosophila melanogaster 50 dro3 FBgn0052283 FBtr0073060 2 1 1 64 3L 3315067 3315085 GCTGTAATGACCATTGTCC 58 3315113 3315131 GTTCCAGATAGGCAATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32280 FBgn0052280 FBtr0073030,FBtr0073031,FBtr0073032 3 3 3 168 3L 3168252 3168339 ATTGCCCTATTTGGTTGCT 59 3168469 3168489 GTAATCAATCTACACCACGGA 59 NA InUTR Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 2 9 15 80 3L 3083796 3084813 TCGCCACTTATATGAATCGA 58 3084853 3084874 CCAAATTAAGTAGTGAGAACCC 58 NA Drosophila melanogaster 50 Shab FBgn0003383 FBtr0072975,FBtr0112829 2 2 4 85 3L 2941551 2941572 CTCCTTCCATCATATCAATCTG 58 2941618 2942577 TTGTTTGCTTTCCTGTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG1143 FBgn0035359 FBtr0072937 2 1 1 94 3L 2646176 2646194 ACCAAGATTAGCATCACCA 58 2646252 2646270 GTGTTTGTCACAGATCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13802 FBgn0035330 FBtr0113127,FBtr0072886 2 2 2 60 3L 2299266 2299774 AAAGCTGAGTGACCTTATGG 59 2299797 2299815 CAGGATGAAGTTGATGCTC 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 R FBgn0004636 FBtr0072867 1 1 1 106 3L 1861082 1861100 GACAGTTACAGGAAGCAGG 59 1860994 1861012 TTCATGTACAAATCCCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 n-syb FBgn0013342 FBtr0072815,FBtr0072817,FBtr0072816,FBtr0072819 2 4 5 299 3L 1635310 1635328 GAGGAAATTCTGGCTTCAG 58 1632235 1632253 TCGAGAAACTTTCGTCCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12030 FBgn0035147 FBtr0072556 3 1 1 137 3L 649359 649380 GGTCAACTTCTATAGAGTGGAC 59 650290 650309 TAGTACTGCAAAGGTATGCG 59 NA DesignNoJunction Drosophila melanogaster 50 MED14 FBgn0035145 FBtr0072554 2 1 2 158 3L 593651 593734 TGGCTGAACTATTACCACG 59 593856 593874 GGAAGCTCATTATCTGCGA 59 NA Drosophila melanogaster 50 CG17181 FBgn0035144 FBtr0072563 1 1 1 243 3L 585229 585247 AATCTCCGACTCGAATTCC 59 584944 585022 ATCCATGATTGATCTGTGC 57 NA DesignRelaxed Drosophila melanogaster 50 p130CAS FBgn0035101 FBtr0113120,FBtr0072474 2 2 3 102 3L 168759 168777 CAAACTCAAATTCGGGAGG 58 168843 172071 GGTGTGATTACCTTTGTCG 58 NA Drosophila melanogaster 50 snoRNA:Psi28S-3316c FBgn0082970 FBtr0113519 2 1 1 66 2R 17217698 17217719 GCAATATCTACAATAGCTTGGG 58 17217744 17217764 GGATGTTTACAATCTGAACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tkr FBgn0003715 FBtr0072458,FBtr0100126,FBtr0072457,FBtr0072456 1 4 4 178 2R 20981953 20981972 GTAAGGAGTTTGGAAAGGAG 57 20979236 20981812 GAGACCAAACATATGTGGC 58 NA Drosophila melanogaster 50 CG4065 FBgn0034982 FBtr0100398,FBtr0072280 2 2 2 98 2R 20024114 20024135 TCCAGTTATCAGTTTCTAGAGG 58 20023979 20024055 GATAAAGAAGTTCAGCGCC 58 NA Drosophila melanogaster 50 CG4049 FBgn0034976 FBtr0072285 2 1 1 104 2R 19997350 19997434 GGATTTATAGATACGGTCAGAC 57 19997267 19997286 TTCCTTGTTTCTTGATCTGC 58 NA Drosophila melanogaster 50 enok FBgn0034975 FBtr0072250 3 1 1 67 2R 19993167 19993186 TAAGTAATCCACAGCACCAG 59 19993280 19993298 TGAGCTAACTGCAATGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30178 FBgn0050178 FBtr0072159 2 1 1 79 2R 19874559 19874577 TCAACGGATACCTGTTCTG 58 19874620 19874638 ATCGATTGGCTTCTCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3825 FBgn0034948 FBtr0072204 3 1 1 61 2R 19864357 19864375 CCCTTCCTCTTTGTTCTCC 59 19864314 19864334 CGATATTGCTCGTAGATAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5339 FBgn0034925 FBtr0072220 1 1 1 232 2R 19785292 19785310 CATACTGTCCGAGGAACAG 59 19785021 19785040 TGATTACGTTGAAGTTCAGC 58 NA DesignNoJunction Drosophila melanogaster 50 TBPH FBgn0025790 FBtr0089627,FBtr0089626,FBtr0089625,FBtr0089624 3 4 4 95 2R 19748031 19748104 CATTATCAAGGGCGTTTCG 59 19747954 19747972 GCAGAGTTGTAGTTGTAGC 58 NA DesignRelaxed Drosophila melanogaster 50 TBPH FBgn0025790 FBtr0089627,FBtr0089626,FBtr0089625,FBtr0089624 1 4 4 143 2R 19748031 19748104 CATTATCAAGGGCGTTTCG 59 19747906 19747924 TTCATGTGGTTACCCTGTG 59 NA Drosophila melanogaster 50 CG11299 FBgn0034897 FBtr0113114,FBtr0113113,FBtr0072087 1 3 3 110 2R 19619397 19619415 ATTTACCAGGACTTTGCCC 59 19619489 19619572 ATCGTTGTACAATCCGTCC 59 NA Drosophila melanogaster 50 Pde8 FBgn0034886 FBtr0072074,FBtr0072077,FBtr0072075,FBtr0072076 3 4 5 103 2R 19562499 19562638 CGTTAATAGATGCGTAGCG 58 19562705 19562723 GAGTGGACATGACATTGTG 58 NA Drosophila melanogaster 50 yip3 FBgn0040063 FBtr0072050,FBtr0072051 1 2 2 116 2R 19132234 19132252 TCTTAAGAGTACCAACGCC 59 19132086 19132104 ACTATGTTCCGATCGATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30270 FBgn0061435 FBtr0089763,FBtr0089762 2 2 2 60 2R 18672277 18672295 TCTTTGGCCAGTATTACGA 58 18672318 18672337 TAATCGTAGGAATGTGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30268 FBgn0050268 FBtr0071877 3 1 1 80 2R 18601081 18601154 ATAATTGCTGAGTTCGAGGAG 59 18601193 18601214 AATATCAAGGGACTGAGATAGC 59 NA Drosophila melanogaster 50 RpS24 FBgn0034751 FBtr0071935 3 1 1 66 2R 18528246 18528264 AACAGGATGAAGAAGGTGC 59 18528198 18528216 ATCAGGCTTACTTCTTGCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG30288 FBgn0050288 FBtr0113367 2 1 1 108 2R 17407685 17407705 TGGTCAGAGTAATGATTTCGG 59 17407478 17407555 CGCACATTCATATACATTGGG 59 NA Drosophila melanogaster 50 CG10069 FBgn0034611 FBtr0071590,FBtr0071589,FBtr0071591 3 3 3 80 2R 17172235 17172255 TATCTATCAGATGTGAGCGGA 59 17172297 17172371 ATACATCAGCAGAATGGGC 59 NA Drosophila melanogaster 50 CG18375 FBgn0034606 FBtr0071622,FBtr0071623 2 2 2 106 2R 17109400 17109418 GAATATCCTGACAGCAGCT 59 17109240 17109330 ACTGATTGCGGTACATCAG 59 NA Drosophila melanogaster 50 CG15658 FBgn0034602 FBtr0071583 1 1 1 90 2R 17085588 17085609 GGACATTAAGTTTCTGATGCTC 59 17085660 17085743 ATCAATTTCCTGGAGCGAG 59 NA Drosophila melanogaster 50 CG34201 FBgn0085230 FBtr0112394 1 1 1 60 2R 16638683 16638701 TGTCATATCAGAAGGTCGG 58 16638724 16638743 ACTCAAGGTATCACTTACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13430 FBgn0034518 FBtr0100495 1 1 2 84 2R 16439217 16439294 GCAATGAGATTATGCACCA 58 16439151 16439169 ATCTTCTGCAGATTCTGGT 58 NA Nonspecific, InUTR Drosophila melanogaster 50 mei-W68 FBgn0002716 FBtr0086461 1 1 1 144 2R 15345800 15345818 GACAATCCTCTGCTAGTCC 59 15345984 15346002 TCATCAGCAGCCTTAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Fak56D FBgn0020440 FBtr0086542,FBtr0086543,FBtr0114605,FBtr0086544 2 4 5 83 2R 15322745 15322827 GGTATTAATACCGCTGAGAG 57 15322681 15322699 CCAAATCGTGAACTCTAGG 57 NA Drosophila melanogaster 50 Dpt FBgn0004240 FBtr0086620 2 1 1 61 2R 14753561 14753579 GAGGACCATATGGCAACTC 59 14753603 14753622 AAATCTGTAGGTGTAGGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)03709 FBgn0010551 FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616 2 6 6 192 2R 14707870 14707888 GATGATCAACATCTCGCTG 58 14708044 14708124 GATGAGTAGGGATACCTGC 58 NA Drosophila melanogaster 50 Cyp12b2 FBgn0034387 FBtr0086609 3 1 1 86 2R 14643155 14643175 GGAGAGCTTGAACTACTATCG 59 14643223 14643299 CATTCCTGACCCTGATCAG 59 NA Drosophila melanogaster 50 CG5098 FBgn0034300 FBtr0113092,FBtr0086732 1 2 2 196 2R 13986927 13986945 GTACCTAGTGACTAGCGAC 58 13987105 13987192 GCTTACGTTTATGCATGCT 58 NA Drosophila melanogaster 50 Mapmodulin FBgn0034282 FBtr0086822,FBtr0086823 1 2 3 133 2R 13755953 13755971 TTCAAGATGTTGCCATCGT 59 13755049 13755794 TCATCTTCGTCGGAAACTC 59 NA Drosophila melanogaster 50 CG8950 FBgn0034186 FBtr0087013 2 1 1 60 2R 12949610 12949628 ATCATCCGACAGAATCCAC 59 12949568 12949586 TCTCATAAATCTCGGCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30100 FBgn0050100 FBtr0087140 3 1 1 71 2R 12179409 12179427 TCAGGAGTCGGATATCGAG 59 12179462 12179480 GATGTCTTGTTGACAGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mrj FBgn0034091 FBtr0087193,FBtr0087196,FBtr0087194,FBtr0087195 3 4 5 150 2R 12093318 12093419 GAAGTGAAGAAGGCATATCGA 59 12092510 12092528 ACTCATCGTATATGCGACG 59 NA Drosophila melanogaster 50 Rho1 FBgn0014020 FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216 3 7 7 83 2R 11993292 11993372 ACACAATTCGGGATCTAGC 59 11993419 11993437 AGGCATTAATCTTCTCGGC 59 NA Drosophila melanogaster 50 Mlf FBgn0034051 FBtr0087294,FBtr0087295 3 2 4 95 2R 11826017 11826036 ATGACTGTGTAATCCAGGAG 58 11825374 11825959 CAATGTTGCCACTGTTCTG 59 NA Drosophila melanogaster 50 CG8291 FBgn0034049 FBtr0087298,FBtr0087299,FBtr0087300 1 3 3 80 2R 11812361 11812437 AGGATCGTTTGAGAATCCC 59 11812299 11812319 GGATAGGAAAGCAGATAAGGA 58 NA Drosophila melanogaster 50 CG33464 FBgn0053464 FBtr0087305 1 1 1 65 2R 11759748 11759766 AAACCGAAGATTCCTCCTC 58 11759701 11759719 TACTGTCCTCGGTATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k05713 FBgn0022160 FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309 2 4 4 84 2R 11747749 11747767 GAACTTCCTCGAGATCCAC 59 11747608 11747702 TACTGCTCTAGATCTAGGCC 59 NA Drosophila melanogaster 50 fus FBgn0023441 FBtr0087347,FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087348,FBtr0087343 1 6 6 60 2R 11550739 11550760 GTCCATATGGTTATCAATGCAC 59 11550639 11550657 AGTCCATCTGGATAAAGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34365 FBgn0085394 FBtr0112590 2 1 4 155 2R 11304328 11306865 CTTCCAAAGGTTCTTCGGT 59 11306983 11307002 AACTGCTGTGACTGTAATCC 59 NA Drosophila melanogaster 50 Cyp6a22 FBgn0013773 FBtr0087450 1 1 1 60 2R 10759325 10759343 TCTACTGCTTATTGCCCTG 59 10759366 10759385 CCAGTAGCTATATCTCGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34379 FBgn0085408 FBtr0112616,FBtr0112614,FBtr0112615 1 3 3 140 2R 10238326 10238345 CCGACGAATTTAATCAAGCA 58 10238511 10238529 CTTGGCGAATAGATCCTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930 2 5 6 106 2R 8335509 8335527 ATCATAACCTCAACAAGCG 57 8335596 8335677 CGAGTTATCACTTGTGTACG 58 NA Drosophila melanogaster 50 Buffy FBgn0040491 FBtr0088077 2 1 1 65 2R 7575229 7575323 TATCATTTCTCAGGGTCGT 57 7575352 7575370 AAACCAGATCTTCTGAGGC 59 NA DesignRelaxed Drosophila melanogaster 50 nompA FBgn0016047 FBtr0089382,FBtr0089381,FBtr0089379,FBtr0089380 3 4 4 81 2R 7202468 7202541 GGGCAATGAATATGATCGT 57 7202405 7202423 ATATCGGGATCCATAACGA 57 NA Drosophila melanogaster 50 Cpr47Ec FBgn0033600 FBtr0088189 3 1 1 66 2R 7146941 7146959 GTGGAGGTGTTCTATACGG 59 7146893 7146912 TTTCCGGATTGATAATGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0089356 3 1 26 164 2R 6419738 6419756 GGAGGACATGACAATGGAG 59 6414712 6419549 ACAACCATTGAGTCTTGGG 59 NA Drosophila melanogaster 50 CG12901 FBgn0033513 FBtr0088354,FBtr0088353,FBtr0088355 2 3 3 126 2R 6244081 6244099 CAAAGATAAGGCCAAGGAC 58 6243973 6243993 TTCTTATCCCTATTCCTTGCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12209 FBgn0033498 FBtr0088364 2 1 1 80 2R 6134641 6134660 CACGGTGTTCATATTCTTCG 59 6134524 6134601 ATAAACTCCACTATAAGCACGG 59 NA Drosophila melanogaster 50 Pka-R2 FBgn0022382 FBtr0088438,FBtr0088437,FBtr0088439 3 3 5 219 2R 5885777 5885795 CGAACGCATCATCAAACAG 59 5884113 5885213 CTTGACATCGAGGAATGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 3 9 9 68 2R 5738998 5739016 CTTTGAGTTGAATGGCCAG 59 5738880 5738966 ACATGGATCTCCTTAACGG 58 NA DesignRelaxed Drosophila melanogaster 50 trpl FBgn0005614 FBtr0088471,FBtr0088472,FBtr0088473 1 3 3 81 2R 5649774 5650241 CTTCCTGTTCATCTTGATTCTG 59 5650283 5650301 CTTCTTCATCCTGGTCGTC 59 NA Drosophila melanogaster 50 CG30339 FBgn0050339 FBtr0088534 2 1 1 61 2R 5489660 5489679 TTACTGAATTTGGCCAAGAG 58 5489232 5489636 TTATACACGTGAAACCGCT 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Su(var)2-10 FBgn0003612 FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578 2 9 9 80 2R 5005652 5005727 GCGAGGCTTAATCAAAGAG 58 5005770 5005789 CAGTTAAGGGAAACCTTCAG 58 NA Drosophila melanogaster 50 Ggamma1 FBgn0004921 FBtr0088645,FBtr0088647,FBtr0088648,FBtr0088649,FBtr0088646 2 5 5 101 2R 4789860 4789878 TAATGTCATCATCCCTGCA 58 4789943 4789961 TCATCTTAGCGCATGACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6a14 FBgn0033302 FBtr0088734 2 1 2 81 2R 4453354 4453374 CTCATATTGGAAGAGGAAAGG 57 4453293 4453311 GTACTTCTTCACGATTCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30365 FBgn0050365 FBtr0088773 3 1 1 60 2R 4247332 4247350 ACCAATGAGAATACTCCCA 57 4247290 4247308 GTATGGTTTCCTTAGGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kermit FBgn0010504 FBtr0088813,FBtr0088814,FBtr0088812,FBtr0088811 1 4 4 60 2R 4035544 4035562 AGCTGTACCAGAAGATTGC 59 4035502 4035520 GTGCAGAAGAGAATGTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18853 FBgn0042173 FBtr0089426 1 1 1 298 2R 3717029 3717108 CAAGGTCAGAGCAATTATACC 58 3717368 3717386 TAGTGCTCGTTGTAGAAGC 59 NA DesignRelaxed Drosophila melanogaster 50 cn FBgn0000337 FBtr0088931 1 1 1 99 2R 3670887 3670973 TTATGTGGAGATGCGAGAC 59 3670806 3670824 ATGTCTTTCTACCTTCGGC 59 NA Drosophila melanogaster 50 CG30497 FBgn0050497 FBtr0088933,FBtr0088934,FBtr0088932 2 3 3 60 2R 3628353 3628371 ACTTGCGTAACCATTTCTG 58 3628311 3628330 TGCATCAGGTACTGATACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL52 FBgn0033208 FBtr0088942 1 1 1 66 2R 3561560 3561578 TACTTAGATGGTAGGCCCA 58 3561452 3561470 TCTCCTGCTGCTTAATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30494 FBgn0027604 FBtr0088918 3 1 1 60 2R 3529409 3529428 TGATGCCCTAACTCAATCTG 59 3529448 3529469 AATCTCTACATTATCCAGCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11127 FBgn0033178 FBtr0088975 3 1 1 61 2R 3351150 3351168 TCCTGCTGATGTACAAGAC 58 3351193 3351211 GAAGTTGACGTACTTGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111102,FBtr0111095 2 2 60 97 2R 3236477 3243205 CGTGCCCTTCTATAGATGG 59 3236398 3236416 TGAGAGTACCAGAGACCTG 59 NA Drosophila melanogaster 50 CG3287 FBgn0028954 FBtr0086157,FBtr0086158 2 2 2 60 2R 2701211 2701229 GCTTCCTCATATTTCTGCT 57 2701252 2701554 TAATAGAACAGACCCGACAG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 jing FBgn0086655 FBtr0114364,FBtr0114363,FBtr0086104,FBtr0114365 2 4 5 186 2R 2506074 2506093 ATGTTTGACTTCTTCGACAC 58 2506242 2506321 ACTCGTCGGAAATGATCTC 59 NA Drosophila melanogaster 50 CG34212 FBgn0085241 FBtr0112405 1 1 1 67 2R 1937588 1937606 TTCTACTTGGTGGTCTTGG 58 1937539 1937557 AGGATGAAGCAACCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12547 FBgn0040521 FBtr0111273 3 1 1 76 2R 674665 674683 GAAAGGTTATGCCTGTCGT 59 674545 674563 TAGTCTACCGTCAATGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CR15280 FBgn0028867 FBtr0100604 2 1 1 188 2L 14782721 14782792 CAGACATTATTTGCTCGTCTG 59 14782477 14782571 TTCTCTGTAAACCACTGGC 59 NA Drosophila melanogaster 50 snRNA:U2:34ABb FBgn0004192 FBtr0080443 1 1 1 61 2L 13215851 13215872 CCTTATGGCTAAGATCAAAGTG 58 13215891 13215912 GAGGAACTATCAGATGTTAAGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 nompB FBgn0016919 FBtr0085924,FBtr0085925 2 2 2 83 2L 21578668 21578757 CGGCAAAGTTTACTATCAGAC 59 21578605 21578623 TCTGAGTATGGACTACGCT 59 NA Drosophila melanogaster 50 His1:CG33825 FBgn0053825 FBtr0091829 1 1 1 60 2L 21471711 21471730 GGTCAATGGAAAGCTTATCC 58 21471753 21471771 CGACAGTTTGAAAGATCCA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 nrv3 FBgn0032946 FBtr0081520,FBtr0081518,FBtr0081521,FBtr0081519 2 4 4 90 2L 21385320 21385338 GCACATTAGTTTGGTACGA 57 21385391 21388515 AGATCTTGGTACGATTTCAG 57 NA Drosophila melanogaster 50 CG31673 FBgn0051673 FBtr0081422 3 1 1 187 2L 20830560 20830581 GGCATTTAATCTGATGAAGAGG 59 20830786 20830869 GAAGGATAACACAATTGGGC 59 NA Drosophila melanogaster 50 Fs(2)Ket FBgn0000986 FBtr0081392 2 1 1 80 2L 20737379 20737397 GACTGATGTACGACTCCAG 59 20737441 20737527 CCTCGGGAATTATATCGCA 58 NA Drosophila melanogaster 50 rtGEF FBgn0015803 FBtr0081357,FBtr0112885,FBtr0081356,FBtr0112884 2 4 4 80 2L 20355989 20356088 CATACTGGATAAGTACAAGGAC 57 20356129 20356147 GTGAGCACAAGTAATCCAG 58 NA Drosophila melanogaster 50 Pax FBgn0041789 FBtr0081213,FBtr0081212,FBtr0081210 1 3 6 177 2L 19410626 19416414 GATGCTCTATTAGCCGACC 59 19410401 19410485 AGTGCTCTTGATACACCTG 58 NA Drosophila melanogaster 50 MESR3 FBgn0032694 FBtr0081073 2 1 1 114 2L 18617654 18617672 TTTCTCATTAAACCGACGC 58 18631768 18649609 TTTCGGGTTTAAGTTTCCG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 RpS26 FBgn0004413 FBtr0081091 2 1 3 179 2L 18443101 18443119 GTGCTAAATGCTAATGGCC 59 18442940 18442960 GATGACGAACTTCTTGATTGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 qua FBgn0003187 FBtr0080997,FBtr0080996 3 2 2 100 2L 17487330 17487412 ATTACGGCAAGAACTTCCA 59 17487248 17487266 GATTAGAGCCGATCCTTCG 59 NA Drosophila melanogaster 50 beat-IIIa FBgn0032627 FBtr0080961 2 1 1 190 2L 17170065 17170143 ATGAAGTTAAAGTGCGTGG 58 17170297 17170315 ATATTAGCTAGGCGTTCCT 57 NA Drosophila melanogaster 50 CG6012 FBgn0032615 FBtr0080923 2 1 1 215 2L 16861180 16861198 CAATGTGGTCCTAATCGCT 59 16860563 16860582 TATTTCAGCAAGGATTTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080903,FBtr0080902,FBtr0080899 3 3 13 99 2L 16774774 16774792 AAGTGTAACGAGACTCTGG 58 16774855 16776278 GTTCGAAACCGTTGTACTC 58 NA Drosophila melanogaster 50 trpgamma FBgn0032593 FBtr0080946,FBtr0080945,FBtr0114470 3 3 3 81 2L 16665214 16665233 TCGAGCAAGAATATTTGTCC 57 16665101 16665173 GCTTAAGGGTCTTATCATTCAG 58 NA Drosophila melanogaster 50 CG12448 FBgn0028857 FBtr0080796,FBtr0080795 1 2 2 60 2L 15942351 15942372 ACGATTCTGGTATATGACAAGG 59 15942392 15942411 AGTTCATGTACACCTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32971 FBgn0052971 FBtr0114463 3 1 3 134 2L 14277356 14277374 AATTCAAAGGAGTCGAGGA 58 14277533 14277551 CATGCTTAGGACGTTATCC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG32971 FBgn0052971 FBtr0080621,FBtr0114463,FBtr0114462 3 3 3 68 2L 14277702 14277722 CATGATGTCAAGGAGTATCAG 57 14277751 14277770 CGATTGTCTATCCATTTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acyp FBgn0025115 FBtr0080555 2 1 1 81 2L 13912480 13912499 TTTCATATCAAGCCCGATCC 59 13912543 13912561 AATTGCTATCATGGTGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9254 FBgn0028513 FBtr0080512 1 1 1 60 2L 13596673 13596691 GTAACTCATTTGCCTGGTG 58 13596631 13596649 GACTCAGTGTCCACTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5945 FBgn0032494 FBtr0080450 3 1 1 64 2L 13240890 13240908 ATTTGCAGATCCTGAACTG 57 13241530 13241548 AAATATCGCGCCAATACTG 58 NA DesignNoJunction Drosophila melanogaster 50 Vha68-1 FBgn0020368 FBtr0080429 3 1 1 107 2L 13001499 13001572 AATGAAGTTCAAGGACCCG 59 13001410 13001430 GCTTAGTCCTCTAGATTTCGG 59 NA InUTR Drosophila melanogaster 50 CG5075 FBgn0032464 FBtr0080421 2 1 1 60 2L 12981131 12981150 CAAGCTGCATGACAATATCC 59 12981171 12981191 ATAGTCCTCGACATTATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090023,FBtr0090026,FBtr0090022,FBtr0090029,FBtr0090025,FBtr0090014,FBtr0090024 1 8 17 120 2L 12724232 12724250 GAGTTTCGAGAAGCAAGTG 58 12724334 12724773 TAATGAAACCAGGAACGGT 58 NA Drosophila melanogaster 50 aret FBgn0000114 FBtr0080345,FBtr0080344,FBtr0080346 2 3 4 122 2L 12278912 12282525 TAAATGGGATGTACCATCCC 58 12298615 12298633 CAAATAGCTTGCGAACGTC 59 NA Drosophila melanogaster 50 rho-6 FBgn0032415 FBtr0080359,FBtr0080360 2 2 2 232 2L 12131043 12131062 TTTATAGGTATCTGCCTGGA 57 12130762 12130780 AACAATATCAGCAGGGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6750 FBgn0032292 FBtr0080122 2 1 1 72 2L 10732190 10732208 GAGATCACCCAAATCCAGG 59 10732076 10732094 TGAGATACTTGCCGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sps2 FBgn0032224 FBtr0079998,FBtr0079997 3 2 2 140 2L 10343347 10343422 ATAATACTACCGTCAAACGC 57 10343524 10343543 ATCACTACATTCAGACAGCA 58 NA InUTR Drosophila melanogaster 50 Oatp30B FBgn0032123 FBtr0079827,FBtr0079828,FBtr0079826,FBtr0079825 3 4 4 84 2L 9537728 9537811 GCATATGGATTATTGCTACGAC 59 9537854 9537874 TTTCTTAGACTTGGTCTGTGG 59 NA Drosophila melanogaster 50 CG18661 FBgn0040964 FBtr0079763 3 1 1 62 2L 8998077 8998095 CGACTACATGTTCAACTCG 58 8998121 8998139 AATAGTCCAATGGAGCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13384 FBgn0032036 FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079658 1 4 6 230 2L 8385088 8386225 TACAGTCAGTATTCCCGAG 57 8386516 8386535 TTATAGGACTTATCCGTCGA 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG13793 FBgn0031935 FBtr0079508 2 1 1 86 2L 7718115 7718134 GGATTATTTCCTTCGGACAG 58 7717962 7718069 GGTTAATCACCAGAAAGTAGTG 58 NA Drosophila melanogaster 50 CG4495 FBgn0031893 FBtr0079405 1 1 2 105 2L 7182804 7182822 GAATCGGAAGATAGCGAGG 59 7182890 7183172 ACTCAATGATCTTCCTCTCG 58 NA Drosophila melanogaster 50 CG17375 FBgn0031861 FBtr0079375 3 1 1 104 2L 6805349 6805441 CTTATTCTTGGTATGTGCGAC 59 6805265 6805283 TCATCCATTCCAGCAATCC 59 NA Drosophila melanogaster 50 CG13771 FBgn0031844 FBtr0079323 1 1 1 118 2L 6663058 6663140 TTCTTGCAGTGTGGATCTG 59 6662958 6662976 CTTGTCTTGCAAGAAGTGG 58 NA Nonspecific Drosophila melanogaster 50 CG11050 FBgn0031836 FBtr0079292,FBtr0079293,FBtr0079291 1 3 3 104 2L 6616057 6616075 TCCAAAGACGATAAGCGAG 59 6616142 6616222 CTCGTATTCCTCAAACAGCT 59 NA Drosophila melanogaster 50 CG13989 FBgn0031786 FBtr0079204 1 1 1 60 2L 6160720 6160738 CAAGCTCTATCTACGCTCC 59 6160762 6160780 TGGCATATAGATCTCGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slmo FBgn0029161 FBtr0079218,FBtr0079217,FBtr0112945 2 3 3 72 2L 6047423 6047441 AACAGATGGTGCTGAAGAC 59 6047369 6047387 TCATAGTAGAGCACCTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lid FBgn0031759 FBtr0079231,FBtr0079232 2 2 2 82 2L 5993336 5993482 GTATCAATAAGGTGCGAACTC 58 5993274 5993292 GAACAACTCTAGCTCCTCC 59 NA Drosophila melanogaster 50 CG34381 FBgn0085410 FBtr0112618,FBtr0112619 2 2 2 92 2L 5850180 5850198 TTGTCATCTGTATGGAGCG 59 5850254 5850843 TGACAATGACCATCCTCAG 58 NA Drosophila melanogaster 50 CG14005 FBgn0031739 FBtr0079160 3 1 1 62 2L 5801328 5801346 GTAGTGAAGACAGAGCCTC 59 5801284 5801305 GGGCTTGTATTCAATATTCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp28d1 FBgn0031689 FBtr0079062 1 1 1 83 2L 5211812 5211890 TGCATCCATGAAACTTTGAG 58 5211936 5211954 TTTGTTCGTCAGTTCACAG 58 NA Drosophila melanogaster 50 Atet FBgn0020762 FBtr0077427,FBtr0112899,FBtr0112898,FBtr0077426 2 4 4 80 2L 4343789 4343809 CATCTCAACTACTGGTACTCC 59 4343849 4343931 GGAGAAGACAATCTGAAATGG 58 NA Drosophila melanogaster 50 drm FBgn0024244 FBtr0077531,FBtr0077530 2 2 2 78 2L 3545739 3545757 TGAGATCACCTATTCGTGC 59 3545799 3546740 CTGACTACATCTGTGCTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG12795 FBgn0031535 FBtr0113019 1 1 1 60 2L 3453264 3453432 ATACAGGGCAATATGAGCG 59 3453454 3453474 CCATAATGGATAAGGCTAGTG 57 NA DesignRelaxed Drosophila melanogaster 50 CG34394 FBgn0085423 FBtr0112638,FBtr0112641,FBtr0112639 2 3 4 104 2L 3363376 3363396 CGAACTGTATTCCATAGACGT 59 3363181 3363310 TGATCATCGACAGTTCTGG 59 NA Drosophila melanogaster 50 CG8838 FBgn0031526 FBtr0077588 1 1 1 60 2L 3358227 3358245 AGTTCCACTCAGTTGAAGC 59 3358268 3358287 CCTTAGCTGTAGATTCTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15408 FBgn0031523 FBtr0077587 1 1 1 164 2L 3333266 3333284 AATTGCCATACCACATTCG 58 3333471 3333654 AAGGTTCCTCTGATGTTGG 59 NA Drosophila melanogaster 50 v(2)k05816 FBgn0042627 FBtr0077657 1 1 1 91 2L 3055305 3055386 CTCAAGGAGATTTGCAGTG 58 3055441 3055459 ATGATCTGTAGAGTGTGCG 59 NA Drosophila melanogaster 50 oho23B FBgn0015521 FBtr0077621,FBtr0077622,FBtr0077623 3 3 4 164 2L 2856560 2856643 CATTACCAAGAACTTCTAAGCG 59 2856766 2856786 AGCTAATCCTGGTTCTAACTG 59 NA InUTR Drosophila melanogaster 50 aop FBgn0000097 FBtr0077851,FBtr0077850 1 2 2 124 2L 2159242 2159326 CTGAGCCCAATACAAATGG 58 2159136 2159154 GACGATCTTGAAGACTCCC 59 NA Drosophila melanogaster 50 CG7263 FBgn0031392 FBtr0077830,FBtr0077831 2 2 2 175 2L 2153370 2153389 CAAGTCTAACGATGCAACAG 59 2153526 2153609 GCTCAAAGAACAAGCTTCTC 59 NA Drosophila melanogaster 50 Gr22c FBgn0045499 FBtr0077899 2 1 1 60 2L 1791097 1791115 GAGCTCAAGGGATACATGG 59 1791055 1791074 CAGTTGTAAGAACAAGGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eno FBgn0000579 FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905 1 4 5 83 2L 1727657 1727675 TAAATTTGTGCAGATCCGC 58 1726602 1726620 GAGTCGTAGATTTGACGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10869 FBgn0031347 FBtr0077917 2 1 2 60 2L 1585896 1585915 TGCTTACTGAGCTTCTAGAC 58 1585855 1585874 TCATTTACCTTGTTGGTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5011 FBgn0040723 FBtr0077973 3 1 1 84 2L 1200986 1201004 ATTTACCACGAACCTCCTC 58 1201052 1201070 CGTATCCTGGACCATATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lwr FBgn0010602 FBtr0078081,FBtr0078082 1 2 2 158 2L 541831 541849 CTACACCATCTACTGCCAG 59 541691 541709 TTCCAAACAAACGCTTACC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14195 FBgn0030998 FBtr0074692 3 1 1 196 X 19104367 19104883 GATTCTTTGCAGGTATCGG 58 19104189 19104207 CATCAGTACGATGGACTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG15056 FBgn0030918 FBtr0074560 3 1 1 102 X 18309563 18309654 CTCGTTCAGCGTAATTAGC 58 18309720 18309738 AAACATATCGCAACTGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32560 FBgn0052560 FBtr0113438,FBtr0074457 2 2 2 163 X 17640916 17641005 GTCATGTCCACCATAGATCTC 59 17641130 17641148 GAGTAGATCCAAAGGTCGC 59 NA Drosophila melanogaster 50 Ipod FBgn0030187 FBtr0071484 1 1 1 85 X 10126135 10126153 TTACAATGTGATAGCCACG 57 10126068 10126086 ATGAATATCCGTGACCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3108 FBgn0029807 FBtr0070833 1 1 1 259 X 5673289 5673381 GCAGTCCAAATATGATGGC 58 5672409 5672427 CAATGAAGCCGTGAATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14050 FBgn0040392 FBtr0070407 1 1 1 76 X 2219481 2219499 CAATCCGACGAAGAAAGTC 58 2219338 2219441 CCTCGGTAATGAAAGACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SNF1A FBgn0023169 FBtr0070216,FBtr0070217,FBtr0070218 2 3 3 78 X 1270213 1270739 TGTACCAGGTCATATCGAC 58 1270781 1270799 ATATAGTCGAACAGCTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41549 FBgn0085681 FBtr0114130 3 1 1 159 U 9114728 9114746 GTATCTATGTGGCAGATGC 57 9114587 9114607 CAGTACTCCTTGATAGTTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40820 FBgn0085523 FBtr0113936 2 1 1 103 U 7044978 7045145 GTAAGACACGTTCAACCAG 58 7044893 7044911 TCATCGTCGTAGAACAAGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1674 FBgn0039897 FBtr0089116,FBtr0089119,FBtr0089117 3 3 4 151 4 258044 258063 CCTAGCTAAGCAGCTTAGTG 59 258177 260949 TAGCGGATTCTTTACTGGC 59 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 3 7 7 85 4 208987 209060 CGGATCATAGACTTACGGA 57 208920 208938 ATCGAAGCATGGTTTAGTC 57 NA Drosophila melanogaster 50 Hsromega FBgn0001234 FBtr0084057 2 1 3 141 3R 17122806 17123536 AAATAGGAAGCCAGTTGGG 59 17123641 17123659 ACAGCTTTCGAATAACGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2003 FBgn0039886 FBtr0085870,FBtr0085871 3 2 2 95 3R 27815036 27815111 GAGATTCCTAAGACGGTGC 59 27815170 27815188 GTTTAGCTGGAGGACTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Med FBgn0011655 FBtr0085815,FBtr0085816 2 2 2 85 3R 27440095 27440113 TATTATCTGGATCGCGAGG 58 27440162 27440236 AGGTCAAACACCTTTATGC 57 NA Drosophila melanogaster 50 tll FBgn0003720 FBtr0085709 3 1 1 60 3R 26678303 26678322 ATCAGAAATACAACAGCGTG 58 26678343 26678484 ACATGGTATAGAATGCGACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2267 FBgn0039792 FBtr0085672 2 1 1 85 3R 26454494 26454512 GAACAATATTGGAGGTGGC 58 26454373 26454445 TCTTCCAGTCAGTCATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CDase FBgn0039774 FBtr0085649,FBtr0085647,FBtr0085646,FBtr0085648,FBtr0085645 1 5 5 80 3R 26289006 26289024 CTGCTCTATGACATCTCCA 58 26289067 26289145 TTTGATGCACAGATACAGTC 57 NA Drosophila melanogaster 50 ATPsyn-gamma FBgn0020235 FBtr0085541,FBtr0085540,FBtr0085539 3 3 3 97 3R 25573740 25573758 TTCTACACCATGAAGGAGG 58 25573661 25573679 AGCTTGTCGATCATCTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Doa FBgn0053553 FBtr0110914 3 1 9 92 3R 24732970 24732988 ACTATCACCAAGATCGAGG 58 24733044 24733434 CATCTGCAGATACTGCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6690 FBgn0038918 FBtr0084149 2 1 1 60 3R 17738147 17738166 GAAACGATTCTCAACATGCT 58 17738189 17738207 CTGCATCCTTGATAATCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 H FBgn0001169 FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917 2 4 4 171 3R 16452162 16452180 AGTACCGACCAAATGTCTG 59 16452313 16452499 ACAGATTCAGTGGTAAGTCTG 59 NA Drosophila melanogaster 50 CG4459 FBgn0038753 FBtr0083849 3 1 1 111 3R 15752846 15752864 CTACCTCATCCTGTACACG 58 15752698 15752771 TGAATTCCGTTCAGTTTCG 58 NA Drosophila melanogaster 50 CG14306 FBgn0038628 FBtr0113245 3 1 1 104 3R 14418072 14418090 TGCCCAAAGACAAGTACTG 59 14418155 14418466 GATTAATCTCGATTAGCTTCCG 58 NA DesignNoJunction Drosophila melanogaster 50 kuk FBgn0038476 FBtr0083398,FBtr0083397 1 2 2 60 3R 12909232 12909250 GTTTCTTCATCGACATCGG 58 12909274 12909292 GTAGCGGTTCCATATCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14877 FBgn0038380 FBtr0083249 1 1 1 99 3R 11715125 11715200 ATAAACGTGATGAAGCGAC 58 11715044 11715062 TCATGAGAAAGCAGGTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31321 FBgn0051321 FBtr0082926 2 1 1 82 3R 10138093 10138172 CTTTCACCTGTCAGATTATCTC 58 10138215 10138233 TGGAACTATAGCCTCACAG 58 NA Drosophila melanogaster 50 l(3)87Df FBgn0002354 FBtr0082703 3 1 1 149 3R 8856858 8856876 TTTCTCTACGGAATCAGCG 59 8856989 8857072 GACGGACCATTGATACCTG 59 NA Nonspecific Drosophila melanogaster 50 CG11600 FBgn0038068 FBtr0082646 2 1 1 123 3R 8463049 8463068 ATAAGATTCCTGCTATCCGT 57 8463153 8463279 GTTGAAGAAAGTGCTTTGGA 58 NA DesignNoJunction Drosophila melanogaster 50 Rrp46 FBgn0037815 FBtr0082248 3 1 1 162 3R 6239342 6239361 CTTGGAGTGTAACTACCGAC 59 6239486 6239562 AATACTGCCACGATCTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8351 FBgn0037632 FBtr0081918 3 1 1 116 3R 4628710 4628801 GTTTCAACCTCTTCCAAGG 58 4628881 4628899 CGATCATAATTGCGTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10267 FBgn0037446 FBtr0081728 2 1 1 117 3R 2283820 2283895 ATATGCATGCGAACTATGC 58 2283976 2283994 GAAGAATTGACGACTGCAG 58 NA Drosophila melanogaster 50 CG12162 FBgn0037329 FBtr0078681,FBtr0078680 3 2 2 267 3R 1294736 1294809 CTAGTTCGGTCTACTGGTG 58 1295040 1295058 CAATCGAAGGAGTATCCGT 58 NA DesignNoJunction Drosophila melanogaster 50 Arf79F FBgn0010348 FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0112859,FBtr0078571,FBtr0078572 1 7 7 109 3L 22863021 22863042 GGAAATGAGGATATTGATGGTC 58 22862866 22862952 CATTGAAACCAATGGTAGGT 58 NA Drosophila melanogaster 50 CG14187 FBgn0036938 FBtr0074868 1 1 1 113 3L 20105761 20105870 TCTTGTTGGTTTCACAGCT 59 20105666 20105684 GATAATCCACAGGTCGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MESR6 FBgn0036846 FBtr0075026 2 1 1 219 3L 19086205 19086224 TCTTTATCGTCGACTACCAC 58 19086406 19086766 TGTCCTGCATAAAGTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GNBP2 FBgn0040322 FBtr0075097,FBtr0075094,FBtr0075095,FBtr0075096 1 4 4 177 3L 18667068 18667159 CCAAGCAATTGAGAATTGCA 59 18666910 18666928 TAGTTGTGAAAGTCGTCCC 59 NA Drosophila melanogaster 50 CG5103 FBgn0036784 FBtr0075132 3 1 1 277 3L 18286765 18286786 CGATATGAACAAGATCTTCTGC 59 18286445 18286527 TCTGCAAATGCTTGATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5284 FBgn0036566 FBtr0075444,FBtr0075445 3 2 2 106 3L 16085786 16085862 GGATCTGATAAAGGGTTCCA 58 16085931 16085949 AACTAGCTCCAATGTCCAC 59 NA Drosophila melanogaster 50 CG6498 FBgn0036511 FBtr0075562 2 1 1 81 3L 15567173 15567260 CAGAGATGCAGCAGTACTC 59 15567305 15567323 TAAGAGGAATCCAAAGGCG 59 NA Drosophila melanogaster 50 Sox21b FBgn0042630 FBtr0075747 3 1 1 126 3L 14118331 14118490 GCGATGTCTTCTTTAGTCTG 58 14118224 14118243 TTATCCTGAGCTATCTTGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10743 FBgn0036376 FBtr0075814,FBtr0075813 1 2 2 99 3L 13507884 13507963 CTATGAGGACAATTGCCGA 59 13508023 13508044 CATCTTTAGGTTTAGCTCTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 Nelf-E FBgn0017430 FBtr0076650 3 1 1 77 3L 8592865 8592947 AGTCTGGTCATCTATTGCC 58 8592806 8592825 TCATCGTATTGAACCATCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6673 FBgn0035906 FBtr0076653 3 1 2 60 3L 8515815 8515833 GCTGACTACATGATTTGGC 58 8515773 8515792 CATCCAGAGTGTACTTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13679 FBgn0035856 FBtr0076697,FBtr0076696 2 2 2 85 3L 8196329 8196347 CTACAGCTCTCCCTATGTG 58 8196395 8196414 TATTGAGGCGTAGGATTCAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 sphinx2 FBgn0052382 FBtr0076864 3 1 1 104 3L 7433754 7433826 TTGTTGTGGCATTGATCAC 58 7433668 7433689 CGAATTTGAGTGAGGATAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lark FBgn0011640 FBtr0076842,FBtr0076843,FBtr0076841,FBtr0076844 1 4 5 98 3L 7333781 7333799 TACAGAGATCGCATGTACG 58 7333861 7333984 GTCATAGTCCCTAAAGCCA 58 NA Drosophila melanogaster 50 Cpr65Aw FBgn0052404 FBtr0077023 3 1 1 64 3L 6135395 6135413 ATACTGCCCAGATACTGAG 57 6135284 6135367 GAATGAGAAGGCATAGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr65Aw FBgn0052404 FBtr0077023 1 1 1 60 3L 6135388 6135407 CCCAGATACTGAGATACGAC 58 6135282 6135365 TCGAATGAGAAGGCATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12027 FBgn0035585 FBtr0073372 1 1 1 122 3L 5011903 5011921 CTGAAGGAAGTCACTGAGC 59 5011744 5011819 TAGATCATCAACCGAAATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13708 FBgn0035577 FBtr0073358 1 1 1 103 3L 4832330 4832348 TTTCACATACCCAAGGAGG 58 4832168 4832263 TTGCTATATTCACCCAGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GV1 FBgn0027790 FBtr0072784 3 1 2 81 3L 1822029 1822048 CAAATACAATGCGAAGACCA 58 1822091 1822405 CAACTGCTGCAAATAGTTCC 59 NA Drosophila melanogaster 50 CG12090 FBgn0035227 FBtr0072705,FBtr0072704,FBtr0072703 2 3 3 151 3L 1524353 1524438 TAGTGGCTGACTTGATTGG 59 1524220 1524238 CAGGAATGTAGTGCAAAGC 59 NA Drosophila melanogaster 50 RabX6 FBgn0035155 FBtr0072577 1 1 1 67 3L 690792 690959 AGATCAAGCTCCAACTCTG 58 690990 691008 GTAGTACGAGGATGTGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16971 FBgn0035114 FBtr0072498,FBtr0072497,FBtr0072496 1 3 3 228 3L 224178 224985 GTGAAGTCGCAAACATGTG 59 225762 225780 TTGTTTGTGTTCCGTTCCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Cpr60D FBgn0050163 FBtr0072334 1 1 1 125 2R 20550739 20550815 ATAGCCTTATCTTTGCCCT 58 20550632 20550650 TGATCTCATGCTGGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3065 FBgn0034946 FBtr0072153,FBtr0072155,FBtr0072154 2 3 3 60 2R 19859018 19859039 GATAAAGATTAAGCTGGAACGG 59 19859060 19859078 TTCAGGAGATACGATCTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34371 FBgn0085400 FBtr0112596 3 1 1 83 2R 19058172 19060020 ATCTCCTCACGATGTACAC 58 19058107 19058126 GATTCATGTCGAGGATAACC 57 NA Drosophila melanogaster 50 twi FBgn0003900 FBtr0100130,FBtr0071953 1 2 2 60 2R 18934046 18934064 ACATAAGCTACAAGCCCAC 59 18934087 18934106 AGCTTGATCACATTGTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30193 FBgn0050193 FBtr0071947 2 1 7 101 2R 18814594 18814612 CCCAGAGTTTACTGTTTCC 57 18814675 18814773 CATATTCCTTGACATCCTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30274 FBgn0050274 FBtr0071888 2 1 1 104 2R 18712765 18713014 AAATATTCGTTCCCGACGA 59 18713082 18713100 TACCCGATTCCGTAATGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30291 FBgn0050291 FBtr0071549 2 1 1 85 2R 16896815 16896833 CACAGGAAGATTAGCAACG 58 16896697 16896769 TAGTAGTTGATATTTGTCCGGG 59 NA Drosophila melanogaster 50 Obp56c FBgn0046879 FBtr0086478 3 1 2 107 2R 15587995 15588094 GATTGCTTTGTGAGCTGTC 59 15587906 15587925 CTTCTCATGCTGTATGATCG 58 NA DesignNoJunction Drosophila melanogaster 50 Rep FBgn0026378 FBtr0086462 3 1 1 78 2R 15380846 15380864 ACTTGACAATGAAGGTGGA 58 15380906 15380981 ATATAAACCCTCGGGACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5036 FBgn0028743 FBtr0089552 1 1 1 92 2R 13685114 13685203 TATCCGAGATTCCTAAACTCTC 58 13685256 13685274 CTAAGTTGGACTATCCGCT 58 NA Drosophila melanogaster 50 CG8950 FBgn0034186 FBtr0087013 3 1 1 67 2R 12948300 12948374 CAGGATCTTCAGGATCCTG 58 12948251 12948270 AATTCATCTTTGACGGTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Menl-2 FBgn0029153 FBtr0100603,FBtr0100601,FBtr0100602 2 3 3 76 2R 12304508 12304527 CGTTTATGATGACGAAATGG 57 12304388 12304469 GGCCCTTATTGTACTTTCC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8441 FBgn0034086 FBtr0087247 1 1 1 179 2R 12073248 12073326 GAAGAATCCGGATAAGCCC 59 12073087 12073105 TTCTGGATGTTCTTCTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8102 FBgn0034007 FBtr0087393 2 1 2 115 2R 11185411 11185486 AGCAGTGGGAATTTCTACG 59 11185314 11185333 TTCATGTCGCAGGATATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34187 FBgn0085216 FBtr0112380 2 1 1 83 2R 11181048 11182511 AGACCATCATCAACTATTCCG 59 11180985 11181006 CATGGTTCGATGTGAATTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12442 FBgn0033770 FBtr0113076,FBtr0087849 2 2 2 69 2R 8588067 8588141 GAACTAAGTCTACTCCCGC 59 8588174 8588192 GCTCGTAGATCTCCTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13148 FBgn0033767 FBtr0087847 3 1 2 62 2R 8574565 8575103 TAATGTCGAGGATAATGAACCC 59 8575126 8575144 TCATCATCCAGGTCATCCA 59 NA DesignNoJunction Drosophila melanogaster 50 Hey FBgn0027788 FBtr0088869 3 1 1 280 2R 3884918 3885349 CTCCAAGGAACAAATCTCG 58 3883915 3883933 TGATATGGTAGTCCATGGC 58 NA DesignNoJunction Drosophila melanogaster 50 Dgk FBgn0085390 FBtr0112581,FBtr0112579,FBtr0112580 3 3 4 164 2R 3732585 3732603 GAAGTTCCAGTACATGCTC 57 3732249 3732396 AACTCTATGGAGTCCATGG 58 NA Drosophila melanogaster 50 tor FBgn0003733 FBtr0112838,FBtr0112837,FBtr0088938 1 3 3 80 2R 3596046 3596064 ATGCCACCTACATAATCCG 59 3595832 3596003 GAAAGTTGTCATCAGACAGG 58 NA Drosophila melanogaster 50 CG34200 FBgn0085229 FBtr0112393 3 1 1 112 2R 1645327 1645430 AATGGATGCTGGTCAAGAG 59 1645505 1645524 TTGGTAGTACTCTTAGGCTG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG31601 FBgn0051601 FBtr0085947 3 1 1 75 2L 22041649 22042109 CAGCTAAGGATACCTACCC 58 22041592 22041610 CCGAACGATATTTCTAGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33846 FBgn0053846 FBtr0091850 1 1 1 69 2L 21507017 21507035 AATTTAAAGGAACGTGGCG 59 21507067 21507086 CGCATTTATAAGTGGCAGTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10186 FBgn0032797 FBtr0081280,FBtr0081281 2 2 2 81 2L 19511020 19511040 TTAGTTTCTACAACGACCTGG 59 19510897 19510980 TCCATACATCTCGATATGATGG 59 NA Drosophila melanogaster 50 CG5325 FBgn0032407 FBtr0080327,FBtr0080326 3 2 2 106 2L 12094355 12094376 TGTCTCCAAGTATTCTGATAGC 59 12094443 12094461 CAAACATGCTGGCTATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5317 FBgn0032404 FBtr0080296,FBtr0113037 2 2 2 78 2L 12056424 12056508 GTCAGACAAATATGCGGTG 58 12056550 12056568 CAGAATTCTCCTCTTGCGA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31757 FBgn0051757 FBtr0080321 1 1 1 140 2L 11835097 11835115 GATGCTCTTAACAAAGCGG 59 11830831 11833279 CCTTGATTCGTCTATGAAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 mre11 FBgn0020270 FBtr0080213 1 1 1 60 2L 11284101 11284186 GTGACAGTCAGTAGTACGC 59 11284209 11284228 CCATAAGGCTACTAAGGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31870 FBgn0051870 FBtr0080137 1 1 2 135 2L 10790357 10790434 TAGGAACTATGGACCTGGA 58 10790533 10790551 CTTATAAGCAGCAGGACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6415 FBgn0032287 FBtr0080108 3 1 1 138 2L 10704076 10704150 TAATGAAGACAGCTGTGGA 58 10704252 10704270 TTCCCGGTAAGTAGTTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7384 FBgn0032262 FBtr0080135 3 1 1 238 2L 10509631 10509711 CACAGAACACATCAATGCC 59 10509196 10509216 CTATTATGGGACCCATCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 bib FBgn0000180 FBtr0079929 2 1 1 96 2L 9987719 9992264 GCTTTATGGCGTAACTGTG 59 9992324 9992342 TTCCACACCGAATCTTTCC 59 NA Drosophila melanogaster 50 hoip FBgn0015393 FBtr0079846 2 1 1 70 2L 9699936 9700017 TGACTGAGGAAGTTAATCCC 58 9700050 9700068 CAAGTTCATGATCTTGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gcm2 FBgn0019809 FBtr0079838,FBtr0079837 3 2 2 85 2L 9611426 9611446 GATTAGCAAGGTTCTTAAGCG 59 9611493 9611570 TGCCACAGGCATTATACTG 59 NA Drosophila melanogaster 50 CG17292 FBgn0032029 FBtr0079648 2 1 2 115 2L 8372615 8372694 AAACAAATCCAGGCTCCTC 59 8372898 8372918 CGGTTAGGTCATAGATATCGC 59 NA Drosophila melanogaster 50 Hrb27C FBgn0004838 FBtr0079347,FBtr0079348,FBtr0079346 2 3 3 170 2L 6924245 6924263 ACCTTCTTTAACCGCTACG 59 6924397 6924699 CTTCTTGATTTCGACCTGC 58 NA Drosophila melanogaster 50 ade2 FBgn0000052 FBtr0079220,FBtr0079221,FBtr0079219 3 3 3 231 2L 6042011 6042092 TGTCGGATCTTCTTCAAGG 58 6041798 6041819 CTGCCAACAAATCCTATAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14013 FBgn0031720 FBtr0079121 3 1 1 70 2L 5553326 5553398 CAAGATACTATCGACCATCG 57 5553275 5553293 CTATGTAGCCGGAGATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14021 FBgn0031702 FBtr0079078,FBtr0079079 2 2 2 102 2L 5331328 5331349 GCGACATCTACTATCTAATGAC 57 5331184 5331265 CTCAGCAGCTTGTTATCTG 58 NA Drosophila melanogaster 50 CG14040 FBgn0031676 FBtr0079009 3 1 1 83 2L 5053278 5053296 ATGGCTACAATACCGTCAC 59 5053343 5053419 TGTTGTCTCGGCAATACAG 59 NA DesignNoJunction Drosophila melanogaster 50 morgue FBgn0027609 FBtr0077457 1 1 1 117 2L 4444547 4444565 CAGTTGCTAAAGGAACTGG 58 4444386 4444466 AGCAGGTGTTACTATTCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17257 FBgn0031495 FBtr0077651,FBtr0077652 1 2 2 101 2L 3031809 3031827 TTTGCCATCCGTTTATGGT 59 3031892 3031970 CAAAGGAGATTCCGAGGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18557 FBgn0031470 FBtr0077689 3 1 1 76 2L 2845450 2845529 AAAGTTAGTGATCGGTGCT 58 2845392 2845410 CAACCTCTTCTACTGTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31679 FBgn0051679 FBtr0077809 1 1 1 99 2L 2237966 2238049 GTTATATCCGATGTTATCCACC 58 2237888 2237906 TGATAATACCAGCTCCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5565 FBgn0031335 FBtr0077944 2 1 1 62 2L 1355745 1355763 CACCAAGAAGTGTTACTGC 58 1355629 1355719 TCTATCAAGGTTCCATCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR31480 FBgn0051480 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 l(1)G0196 FBgn0027279 FBtr0112508,FBtr0077354 2 2 5 168 X 21905422 21905440 GATATCAACGACCGTAACG 58 21905572 21906078 CTCTGTTGGATATTGCTCC 57 NA Drosophila melanogaster 50 Lsd-2 FBgn0030608 FBtr0073967 2 1 3 94 X 14968002 14968022 CCTCCTTGAATACTACTTCCC 59 14967383 14967401 CAGAACTCTTGCCATTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 ogre FBgn0004646 FBtr0071037,FBtr0071036 2 2 2 79 X 6870079 6870097 TACACCTACTACCAGTGGG 59 6869302 6869321 TTATTCCACAGGAATTTGGG 57 NA DesignNoJunction Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 3 13 13 81 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567131 2567221 CTGTATTGAGAGCTCATGCT 59 NA Drosophila melanogaster 50 Sox102F FBgn0039938 FBtr0100600 1 1 2 93 4 844189 844210 GAAGATCAAACGAATGAGAAGG 59 823944 844135 CGTAATGAGCCTGACTGAG 59 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 3 14 14 110 3R 27690344 27690864 TAAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 CG5484 FBgn0039450 FBtr0085037,FBtr0085039,FBtr0085038 1 3 3 88 3R 22544580 22544653 ATGCATAAGGATTGGTCCC 59 22544705 22544723 GTGGGCAGATAGAGATCTG 58 NA Drosophila melanogaster 50 Myo95E FBgn0039157 FBtr0084579,FBtr0100518,FBtr0100519,FBtr0100516 1 4 7 110 3R 19982894 19982994 AGTTTATATCGTGTCGCCC 59 19982802 19982820 CTGTCTGATCTTCCACTGG 59 NA Drosophila melanogaster 50 cnc FBgn0000338 FBtr0084397,FBtr0084394,FBtr0084392,FBtr0084395,FBtr0084396,FBtr0084393 1 6 7 67 3R 19013518 19013609 ATGTCTTCCAGTACCTACG 58 19013469 19013487 CTGTTGCAAACTGTAGTCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG17618 FBgn0040587 FBtr0113328 3 1 1 60 3R 18555460 18555480 GTATTGGTGATGCTTGTATCC 58 18555556 18555577 ATACTGGATATACGATCAAGGC 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 lbe FBgn0011278 FBtr0084091 1 1 1 67 3R 17267866 17267884 GAAGGACTTCGATAGCGTC 59 17267817 17267835 TTAGGTCGTTCACGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14306 FBgn0038628 FBtr0113245 2 1 1 61 3R 14418150 14418168 GCATACGGAAGCTAATCGA 59 14418481 14418501 GTTTAAAGTCGTGGGAATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9813 FBgn0038143 FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767 2 6 6 120 3R 9199920 9200008 TGGCAAAGGTAATGTTTGC 59 9199818 9199836 AAGTCGATGGGTATGACAC 59 NA Drosophila melanogaster 50 l(3)neo38 FBgn0086910 FBtr0082533,FBtr0110877,FBtr0110876 1 3 3 120 3R 7596967 7596985 CTCCATACCGTACTCACAG 58 7595815 7596883 CTGGTTGAGGACTTCTTCC 59 NA Drosophila melanogaster 50 CG33056 FBgn0053056 FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311 2 5 5 131 3L 21191820 21191990 GGAACATATGAGGGAGCAC 59 21191707 21191726 ATTATGTCCACGCTATCCTC 59 NA Drosophila melanogaster 50 Mkp3 FBgn0036844 FBtr0075035,FBtr0075036 3 2 2 156 3L 19062985 19063095 TTAATGGGTCTTAGGTCCC 57 19062847 19062865 GTCCAGGGATTATCTCCAC 58 NA Drosophila melanogaster 50 CG8065 FBgn0036075 FBtr0076296 1 1 1 68 3L 10209611 10209631 AACTTCCATCTATATCGGAGC 59 10210143 10210161 TTTCATCAGATCGGAACCC 59 NA DesignNoJunction Drosophila melanogaster 50 orb2 FBgn0035938 FBtr0076563,FBtr0076561,FBtr0076562 1 3 4 120 3L 8942757 8942775 TCGCTCAAGTTACCAAAGG 59 8942279 8942297 CAGTTCCTGACGATGTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 ImpL3 FBgn0001258 FBtr0077008 2 1 1 186 3L 6253759 6253778 TCCAACTTTCTGAAGAACCC 59 6253524 6253611 TATCGGGACTGTACTCTACC 59 NA Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 2 9 15 80 3L 3083796 3084813 TCGCCACTTATATGAATCGA 58 3084853 3084874 CCAAATTAAGTAGTGAGAACCC 58 NA Drosophila melanogaster 50 Unc-89 FBgn0053519 FBtr0113464 1 1 2 80 2R 19900368 19900444 AAGTCAAGATGCTTTGTGC 58 19900306 19900327 GAACTCTAGTATATCGATGGGC 59 NA Drosophila melanogaster 50 Mes4 FBgn0034726 FBtr0071827 1 1 1 64 2R 18299680 18299698 GATCCGGATCTGCATATGG 59 18299726 18299744 AATAGTTCCACTGCCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15661 FBgn0034605 FBtr0110814,FBtr0071624 2 2 2 91 2R 17103410 17103490 TTCTACTGTGATCAGCACC 58 17103337 17103355 AGGATTTCCTCGGTAATCG 58 NA Drosophila melanogaster 50 CG30296 FBgn0050296 FBtr0113369,FBtr0113370 2 2 5 115 2R 16910985 16911003 ACCTATCCAATGGACATGC 59 16911082 16911489 CAATTTGGACGTCAGTTCC 59 NA Drosophila melanogaster 50 CG16739 FBgn0034505 FBtr0086286 3 1 1 63 2R 16229792 16229810 CTGTACTTCACCAATTGGC 58 16229837 16229855 CATAGAGCAATCCCAAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dg FBgn0034072 FBtr0087258,FBtr0087257,FBtr0087256 3 3 3 132 2R 11972593 11972678 TTTATGGCCTACCTCTGGA 59 11972479 11972497 TTAATGGTCCTAACCGCTC 59 NA Drosophila melanogaster 50 CG34187 FBgn0085216 FBtr0112380 2 1 1 68 2R 11180982 11181000 TTCACATCGAACCATGTCC 59 11180932 11180950 CTTGACAGGCTTCTTTACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpn6 FBgn0028689 FBtr0087474,FBtr0087475 2 2 2 130 2R 10638752 10638770 CTTTGAAGGATTCGACAGC 58 10638491 10638658 AGGTAATAGCCAGCTTTCC 59 NA Drosophila melanogaster 50 CG11784 FBgn0033381 FBtr0088579 3 1 1 132 2R 5010058 5010133 GAGGAATTTGTCAAGCTAAACC 59 5010225 5010244 GATAGAGTTGGTCATTCCCG 59 NA Drosophila melanogaster 50 Df31 FBgn0022893 FBtr0085919,FBtr0085920,FBtr0100293 1 3 3 254 2L 21627955 21627973 ATGAGAAGAAGGACGAGGA 59 21627635 21627653 GAACCTCATCCTTTGTGCT 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Hr38 FBgn0014859 FBtr0081397 3 1 2 62 2L 20690174 20690192 TGAGGCTTACTAACCAAGC 59 20689589 20690149 AACTAAAGGAGCTATTGGGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG31809 FBgn0051809 FBtr0113414 2 1 1 81 2L 16853857 16853965 TCATGGATTACAGTACGCC 59 16853794 16853813 CATTCGCTTAAAGAGTTGGT 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG4908 FBgn0032195 FBtr0079950,FBtr0079949 1 2 2 60 2L 10223857 10223875 TCTAGCTTTATAACCGCCC 58 10223899 10223917 ATAGGTTTAGCAGGCAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pes FBgn0031969 FBtr0079553,FBtr0114550,FBtr0079552 3 3 3 119 2L 7988318 7988403 CCGGGTATTACCTTGTATGAG 59 7988219 7988237 GACAATTAGCGGAACAAGC 59 NA Drosophila melanogaster 50 CG5181 FBgn0031909 FBtr0079467 1 1 1 60 2L 7409419 7409440 GATATTGTCAGACTGACAAAGG 58 7409380 7409399 AATAAAGGGTCAGACAATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF-4a FBgn0001942 FBtr0079178,FBtr0079175,FBtr0079177,FBtr0079176 1 4 4 89 2L 5984935 5985036 ATTCATAGAATTGGTCGCG 57 5985089 5985107 ATCCTTAAGGATTCGTCGA 57 NA Drosophila melanogaster 50 morgue FBgn0027609 FBtr0077457 2 1 1 60 2L 4443838 4443857 TTGTCAACATAATACCCGTC 57 4443797 4443815 GACATGTCGTCCAAATAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34394 FBgn0085423 FBtr0112638,FBtr0112641,FBtr0112639 1 3 4 80 2L 3363352 3363370 GTGTTAATGCAGGCATTCC 59 3363179 3363309 TGTGATCATCGACAGTTCTG 59 NA Drosophila melanogaster 50 CG13692 FBgn0031254 FBtr0078057 2 1 1 60 2L 422032 422052 TACAGATCCTGGAAATTGGAG 59 422074 422092 ACATCCTCGAAATACTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bap FBgn0010380 FBtr0074789 3 1 1 84 X 19626776 19626794 AATGGTTTGGATCATTGGC 58 19626842 19626925 ATCCTGGAATCCTTCAAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6340 FBgn0030648 FBtr0074039 1 1 4 282 X 15377319 15377337 AACAATAACTATGGCAGCG 58 15379284 15379365 CCTTGCTGTGATTCTTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG2574 FBgn0030386 FBtr0073644 1 1 1 64 X 12303468 12303555 GCCAAGGTTCTACTTTCCA 59 12303583 12303601 ATGACTAGCGGATCATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr98a FBgn0039520 FBtr0085184 3 1 1 97 3R 23314953 23314973 CAGCTCTAAGAAGTCTAAACC 57 23315031 23315106 GAACTTTCCCAGCATTTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 scrib FBgn0026178 FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085020,FBtr0100181,FBtr0085019 2 7 7 123 3R 22392940 22393020 GATGAGTTTGAATCCGATCG 58 22393215 22393233 GGACACGCTTATTCTTCAG 58 NA Drosophila melanogaster 50 zen2 FBgn0004054 FBtr0081671 1 1 1 72 3R 2569654 2569739 ATGATGTATCCTTGCGTCG 59 2569600 2569618 TTGATTTCTCCGAAGACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pb FBgn0051481 FBtr0089279,FBtr0089278,FBtr0089277,FBtr0089276 2 4 4 80 3R 2536680 2537244 GATGATCAGTCCGATAGTAACTC 59 2536622 2536641 GGAATCGGGTATATCATCGG 59 NA Drosophila melanogaster 50 CG7372 FBgn0036522 FBtr0075570 3 1 1 199 3L 15614517 15614535 AACCATCCACGATAAGCAG 59 15614698 15614774 TTGAATTGGTGGGTTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18769 FBgn0042185 FBtr0076973,FBtr0076975,FBtr0076970,FBtr0076974,FBtr0076972,FBtr0076971 2 6 6 104 3L 6584089 6584166 TTATTGCTCAGCTCTACGA 58 6584234 6584252 GTGGTTCTAGTTCATAGCG 57 NA Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567,FBtr0079574 2 9 9 94 2L 8107088 8107106 TTCAAATACAGCCGTTGTG 58 8107164 8107246 TTACATTGGCAAAGGTCCA 59 NA Drosophila melanogaster 50 Tsp FBgn0031850 FBtr0079313,FBtr0079311,FBtr0114488,FBtr0079312,FBtr0079314 2 5 6 96 2L 6701752 6701770 CATCACTCTCACTCGATCC 59 6700488 6700562 CGACGAGGTCTAATGTGTC 59 NA Drosophila melanogaster 50 CG5397 FBgn0031327 FBtr0077920 3 1 1 187 2L 1240784 1240803 CATGTATCTATCGATGTCGC 58 1240952 1241051 TACTCCTTAAGCAATTGACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me28S-A774b FBgn0086078 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:K2:42Ed FBgn0011895 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:K2:42Ae FBgn0011891 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG40486 FBgn0069972 FBtr0111188,FBtr0111187 2 2 2 72 X 22361363 22361381 CTCATTAACAGCCTAACGG 57 22361309 22361327 GATACATGTTGAGCACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14476 FBgn0027588 FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058 2 5 5 95 X 21472298 21472388 CCAGTAGATGATTTCAAGATCC 58 21472224 21472242 GTGCAACATCAAGGTTGAG 59 NA Drosophila melanogaster 50 CG1518 FBgn0031149 FBtr0077264 3 1 1 113 X 20923020 20923040 TACTAGATCCATCCTATGCCA 59 20922617 20922945 AGAGGAAGACCAGGATCTG 59 NA Drosophila melanogaster 50 Mgstl FBgn0025814 FBtr0077242 3 1 2 68 X 20913602 20913623 ATGGTCGGCTATATTGATACTC 59 20913652 20913670 GTAAAGAAGCGCATGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shakB FBgn0085387 FBtr0112569 1 1 5 125 X 20663759 20676866 GAGTAGATCATCGGTGTCTC 59 20663653 20663671 GGATTTCCTACGTACTGCC 59 NA Drosophila melanogaster 50 CG1835 FBgn0031127 FBtr0077277 3 1 2 137 X 20540413 20540431 TAAGGAGCTTGCCTTTGAG 59 20540596 20540614 TCTCTTCTGCTTATGCCAG 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 Pbprp2 FBgn0011280 FBtr0077303,FBtr0077304 3 2 2 185 X 20291523 20291615 CTGCAGATAATGGATGAATCC 58 20291826 20291844 CTCGTAAATGCATTCCTCG 58 NA Drosophila melanogaster 50 Peritrophin-A FBgn0022770 FBtr0077335,FBtr0077336 3 2 2 61 X 20119014 20119032 CTAGGTTTACACTGGTTCG 57 20119056 20119075 AAGTAGTTGGTTAGTCGGAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14205 FBgn0031034 FBtr0074730 3 1 1 81 X 19487506 19487525 TATCGATACTGTGCGTTCTC 59 19487568 19487651 CACTTATTTAGCGGTTGGTC 58 NA Drosophila melanogaster 50 mRpS14 FBgn0044030 FBtr0074785 1 1 1 60 X 19373535 19373553 AGTTGTCCACAAGTACAGG 59 19373493 19373511 CTTATTGTAGTCGGCGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tgy FBgn0030984 FBtr0100167,FBtr0074702 2 2 2 73 X 19020044 19020062 TACGCCTACTACAATCCGA 59 19019628 19019646 CTGTGCACATAGTGAAAGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 tgy FBgn0030984 FBtr0100167,FBtr0074702 3 2 2 74 X 19020045 19020063 GTACGCCTACTACAATCCG 59 19019628 19019646 CTGTGCACATAGTGAAAGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG32544 FBgn0052544 FBtr0074644 1 1 1 60 X 18754563 18754581 CAACAAGACGAGAGTCTGG 59 18754605 18754623 ACAGGATGCTATTGAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7101 FBgn0030963 FBtr0074639 1 1 1 60 X 18725005 18725024 TTTCTTTACCGTCATGTTGC 59 18725047 18725065 ACATGTCGCAGTAGAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6961 FBgn0030959 FBtr0074660 3 1 1 238 X 18681362 18681439 TCGAGGATGAGGAAATATCTC 58 18681144 18681162 CTCCTTGGTGCTATTTGAG 57 NA DesignRelaxed Drosophila melanogaster 50 CG6617 FBgn0030944 FBtr0074615 3 1 1 83 X 18544260 18544278 CCATCATCAAGGAGGAGTG 59 18544195 18544213 AGTAGTTCATGATCAGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-his FBgn0027087 FBtr0074594 1 1 2 99 X 18412109 18412868 TGAGAATTGAAGTGCTGAC 57 18412929 18412949 AAGTCATACCTCATCGATAGG 58 NA Drosophila melanogaster 50 CG6867 FBgn0030887 FBtr0089574 2 1 1 85 X 17922031 17922119 TGACTGTGGAACTCTACTC 57 17922168 17922186 ATTGTCGGAGATTAAACGC 58 NA Drosophila melanogaster 50 CG12986 FBgn0030868 FBtr0074474 1 1 1 295 X 17713593 17713611 TGAGCATCTTTATCGCTGG 59 17713316 17713334 GAATATCCTCAGGCGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5172 FBgn0030830 FBtr0114540 2 1 2 298 X 17115619 17115637 CTGATCGCCTTAACCTCAG 59 17116321 17116339 CCATAACCTCCTTGTCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4829 FBgn0030796 FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337 2 5 5 92 X 16718723 16718742 GAGAAGGGATACCATGTGTC 59 16718794 16718964 CAAATAGATTTGGTACTGCTCG 59 NA Drosophila melanogaster 50 CG9672 FBgn0030777 FBtr0074361 1 1 1 60 X 16600451 16600469 CTACAGCACTCTGAAGACC 59 16600409 16600429 ACTGAAAGTAATCTCCTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Axs FBgn0000152 FBtr0074372,FBtr0100417 1 2 2 80 X 16576145 16576242 CACGATATCCTGTATCTCGA 58 16576084 16576102 AAAGTAGTTCCGGATGTCC 58 NA Drosophila melanogaster 50 CG8959 FBgn0030691 FBtr0074192 2 1 1 146 X 15677084 15677102 CGTCAGTATCATATCACCG 57 15676900 15676918 TAAATTACCAGATCGCGGT 58 NA DesignNoJunction Drosophila melanogaster 50 Grip128 FBgn0026433 FBtr0074075 3 1 2 205 X 15365293 15365420 GACAGCTTAAGTGACTGGT 59 15365106 15365124 ATCCGAAAGTCGTAACTCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG15027 FBgn0030611 FBtr0073965 3 1 1 74 X 14979477 14979496 GATTAACCTAAAGCAGTCGA 57 14979422 14979440 GTCATGGTGATCACATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15890 FBgn0030576 FBtr0073939 1 1 1 82 X 14653323 14653343 CATTCTCAATGTCTGCTTCTC 59 14653154 14653282 CGTAGAATCCAATTTGCTTGAG 59 NA Drosophila melanogaster 50 NetA FBgn0015773 FBtr0073942 1 1 1 80 X 14498822 14498840 ATGACCTGGATCATACCGA 59 14498642 14498781 ACCCAAGATCAAATAGGATCTG 59 NA Drosophila melanogaster 50 CG13402 FBgn0030538 FBtr0089267 2 1 1 60 X 14066339 14066357 TATCGACGAAATCGAGGAG 58 14066297 14066317 GGTTAACACAACCTTACTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12479 FBgn0040871 FBtr0073869 1 1 1 171 X 14045895 14045913 ACATCAATCGATGCCTCTC 59 14045742 14045760 TTTACATCGTTGAGCTCCT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 mus101 FBgn0002878 FBtr0073817 3 1 1 60 X 13617195 13617213 AGTATAAGGCAGCCATACG 58 13617237 13617255 CTATCGAAGATCCATTCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2691 FBgn0030504 FBtr0073848 2 1 1 87 X 13515708 13515729 CATTCTGAGGAACGATAAATCG 59 13515577 13515660 GCGAAGTAGTTCGTAGGTC 59 NA Drosophila melanogaster 50 CG1681 FBgn0030484 FBtr0073778 3 1 1 161 X 13302599 13302698 GATAATGCGGTGAATCTCG 58 13302822 13302912 ATTGTAGCCAATGGATTTCG 58 NA Drosophila melanogaster 50 CG15727 FBgn0030410 FBtr0073709 3 1 1 60 X 12522734 12522752 GAACCTGATGAACTTGACG 58 12522692 12522711 CAGAGCCTATATCCAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32653 FBgn0052653 FBtr0073665 3 1 1 60 X 12425049 12425067 AAGTGTACTTCGAGGTAGC 58 12425007 12425026 AGGACTAAGTGATCTGTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cac FBgn0005563 FBtr0073589,FBtr0073588 2 2 10 127 X 11856269 11856287 GAAGATCATTGGATTCGGT 57 11848305 11854113 TTGAGTTCGAATCATCGTG 57 NA Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489 2 8 12 100 X 11291936 11292011 ATATAACCAGAGAACCGCG 59 11292075 11292093 GGACACATAGATACCCTGG 58 NA Drosophila melanogaster 50 dsh FBgn0000499 FBtr0073454,FBtr0073455 3 2 2 60 X 11251507 11251525 ACGACAGTATTATTGCCGA 58 11251549 11251567 AGGTTATTCTGGTCCAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15211 FBgn0030234 FBtr0112977,FBtr0073376,FBtr0112975,FBtr0112976 1 4 4 179 X 10672153 10672254 ATATTCTCGGAGCTGATCAC 59 10672396 10672414 CAGGAACAGGAAGTACGTG 59 NA Drosophila melanogaster 50 CG2124 FBgn0030217 FBtr0071491 2 1 1 60 X 10491016 10491035 TGGGCTTCTTTAAGACACAG 59 10491057 10491076 TGATAGAGTTGCGTTAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12644 FBgn0040940 FBtr0071434 2 1 1 206 X 10052889 10052907 CCAAGACAATGTCATTGGC 59 10053077 10053095 ACTCACCATTCACATAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 APC4 FBgn0052707 FBtr0071285 2 1 1 82 X 8977506 8977584 GGAGAACCTAGGAACTTACAC 59 8977627 8977646 CAATATTGGTCATTGGCTGC 59 NA Drosophila melanogaster 50 rdgA FBgn0085373 FBtr0112550,FBtr0112552 2 2 3 95 X 8917351 8918116 GTGGAAGAGCCCTATACTG 58 8918298 8918316 CCTTGTTCATGTAGTGCAC 58 NA Drosophila melanogaster 50 CG33181 FBgn0053181 FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451 2 5 5 82 X 8409361 8409381 ATTATCGGGATTATACCACCG 59 8409425 8409512 GTCTTCGCATAGGGAACTC 59 NA Drosophila melanogaster 50 CG11190 FBgn0030035 FBtr0071175 3 1 1 61 X 8299849 8299869 TCTATTCCGTCTACGATATGC 58 8299808 8299826 GACATTAAACAGCCGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trxr-1 FBgn0020653 FBtr0071168,FBtr0071167,FBtr0071169 2 3 3 104 X 8140380 8140398 AAAGATCAAGCCAGACTGG 59 8140466 8140554 TACTCCACTTTCTTGTCGC 59 NA Nonspecific Drosophila melanogaster 50 mys FBgn0004657 FBtr0071105 3 1 1 118 X 7958771 7958789 CTATGTCTCGACCATTCCC 59 7959557 7961104 TCACCTCGTTAGAGAAGCT 59 NA Drosophila melanogaster 50 CG12155 FBgn0029957 FBtr0071071 3 1 1 60 X 7624716 7624734 AACCAATCGTCATGATTCC 57 7624758 7624776 CTCTGTTACATCCACCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12689 FBgn0029952 FBtr0071081 3 1 1 62 X 7479777 7479798 GATACGAATAGTTGAACACCAG 58 7479736 7479754 GAGTTCACAGGTCTTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 2 12 15 239 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978621 6978640 AATTGATCTACCTCTGTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 CG14439 FBgn0029898 FBtr0070960 2 1 1 120 X 6649035 6649053 TGTGATGAACAACATTGGC 58 6649136 6649215 GAGAATAGAACTGATGCCGT 59 NA Drosophila melanogaster 50 CG5937 FBgn0029834 FBtr0112952,FBtr0070868 1 2 2 60 X 5938617 5938637 GTATGCTATGTGTTTGGATGG 59 5938727 5938747 CAGATTCAAACTGTTGCTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6978 FBgn0029727 FBtr0070715 3 1 1 60 X 4679151 4679170 GCCCACCTATATGTACAGAG 59 4679190 4679211 CGAGGATATTATGCCATTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cib FBgn0026084 FBtr0070641,FBtr0070639 3 2 3 200 X 4004033 4004192 CGATAAGGAAGCCATCGAG 59 4004356 4004374 TCTCAGATCTCGGATCTCG 59 NA InUTR Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514 1 9 14 83 X 3215176 3215194 TCTATATCGCTCCGATTCG 58 3215240 3219968 TCTTTAAACCTTTCGCTAGC 58 NA Drosophila melanogaster 50 CG17959 FBgn0029647 FBtr0070557 3 1 1 109 X 2841460 2841481 CCAAGAGATATCTCAAGAAGCT 59 2841551 2841569 TAGGTAGTACTCCTCCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34052 FBgn0054052 FBtr0100107 3 1 1 98 X 2216181 2216200 CAGTACGGTACAGTAAGGAC 59 2216038 2216056 TTTGGGCTGAAGTACAGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG2924 FBgn0023528 FBtr0070412,FBtr0070413 2 2 2 81 X 2160700 2160866 GCAGTACAAGCAAGAAGGA 59 2160637 2160658 TAGTCTTGTCTCTGACTTTGAC 59 NA Drosophila melanogaster 50 CG14801 FBgn0024988 FBtr0070305,FBtr0070304,FBtr0070306,FBtr0070307 2 4 4 140 X 1737990 1738010 GTTTGATCATATCCACAAGCG 59 1738112 1744662 AGGAGTTTGTCTTCGATGC 59 NA Drosophila melanogaster 50 CG14811 FBgn0029590 FBtr0070373 1 1 1 60 X 1715817 1715835 TTCTCCCAAGCTTGTAACC 59 1715775 1715794 TGATAGAAATACGACGAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32809 FBgn0023531 FBtr0089815,FBtr0089814 3 2 2 83 X 1579765 1584245 CCACAAATCAAAGATTGGC 57 1579700 1579718 TCTGAAGAGTACATGCCTC 58 NA Drosophila melanogaster 50 l(1)G0431 FBgn0028274 FBtr0070297 1 1 1 89 X 1356601 1356686 TTATGGATACAATCGCGGT 58 1356530 1356550 CCATTGACGTAGTCTTTAAGC 59 NA Drosophila melanogaster 50 CG14785 FBgn0027795 FBtr0070231 1 1 1 257 X 1350071 1350089 AAACTGTTACCTCAGCGTC 59 1349705 1349723 TTAGACTTGAGGGTGATGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13362 FBgn0029531 FBtr0070150 3 1 1 80 X 644741 644817 AAAGACAACAACGGAAACC 58 644679 644697 GTGTATGTGCGGAAATAGG 58 NA Nonspecific Drosophila melanogaster 50 Suv4-20 FBgn0025639 FBtr0070151 1 1 1 105 X 547480 547498 TACGATATAGCCATCCAGC 58 547262 547411 ATCGGACGATATGATCGTG 59 NA Drosophila melanogaster 50 svr FBgn0004648 FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070082 2 5 7 105 X 396960 398709 AACTTTGATGGCAACTTCC 58 398778 398796 GGTGTTCGTATTTAGTCGG 57 NA Drosophila melanogaster 50 CG41020 FBgn0085556 FBtr0113969 2 1 1 60 U 7799383 7799401 AAAGACAGTTGAAGATCGG 57 7799422 7799443 TCTTAACTCAGTTACATCCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40339 FBgn0058339 FBtr0113866 2 1 2 71 U 1062794 1062814 TTGTATACTCCTGTTCTCTGG 58 1062845 1062865 TCGTTATCTCCACATAACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40207 FBgn0058207 FBtr0113835 3 1 1 86 U 882428 884776 TCACAGCTAACTTGGTTCG 59 884824 884844 TCCGAATTCCAAAGTCTAGAC 59 NA Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131 2 5 5 80 4 370302 370370 GATTCACCGCTTAAAGCAG 59 370240 370259 CTCAGTTGCTAATGCAAGTG 59 NA Drosophila melanogaster 50 Ptx1 FBgn0020912 FBtr0089390,FBtr0089389,FBtr0089391 1 3 3 251 3R 26750052 26750070 GAAACCACGATCAAGACAG 58 26750285 26754871 ATTCTTGAACCACACCCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG2246 FBgn0039790 FBtr0085674,FBtr0085678,FBtr0085673 2 3 6 102 3R 26419561 26419843 GACGCCTAGAAACTCTACTC 59 26419478 26419496 CTTGACCTTGACAATGTGC 59 NA Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634 3 4 5 103 3R 26212311 26213196 AGATTTCAAGTGCTCCCTG 59 26212226 26212244 TGATCTCCTCCTGGATCTG 59 NA Nonspecific Drosophila melanogaster 50 CG31033 FBgn0039705 FBtr0085529,FBtr0085528 3 2 3 84 3R 25658970 25658988 CTACTGGAGCGACTTATGC 59 25658060 25658924 CCGAACGTTTCCTAATTATGC 59 NA Drosophila melanogaster 50 CG14515 FBgn0039648 FBtr0085389 2 1 1 163 3R 25023678 25023696 CCAAGACCATTCCAGAGTG 59 25024840 25024858 TTTGTTCACAATGTCGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14528 FBgn0039611 FBtr0085329 2 1 1 60 3R 24702238 24702256 GAGAACATACCGAAGTCGT 59 24702280 24702298 TCAGAAGTGCTTTGTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Noa36 FBgn0026400 FBtr0085320 1 1 1 86 3R 24424304 24424322 ACAAGCTGGGTCAATACTC 59 24424236 24424254 TCTTGTCGTACTTGAAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wdb FBgn0027492 FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206 3 7 7 131 3R 23392424 23392442 AAATTCTTAGGACTGCGGG 59 23392247 23392330 GAATCCGTTGATGATACTGC 58 NA Drosophila melanogaster 50 CG5402 FBgn0039521 FBtr0085213 3 1 1 63 3R 23328018 23328036 CACAACGACTAGAACAACG 58 23327973 23327991 TGTTTCCAAGACCGATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5471 FBgn0039440 FBtr0114538 1 1 1 211 3R 22455687 22455705 TTCTCCGTAGTTCTTTGCC 59 22455880 22455898 GATTGAGATCCTTCCAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scrib FBgn0026178 FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085019 2 5 7 88 3R 22406736 22415639 CAACTACAGTCAACACCTG 57 22415691 22415709 TTAGGCACTTTAGTCGGAG 58 NA Drosophila melanogaster 50 CG11892 FBgn0039313 FBtr0089645,FBtr0089644 2 2 2 60 3R 21108218 21108236 TCTTCGACATTAGTCCTGG 58 21108258 21108278 TTATTGGTCCAAAGATCTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31510 FBgn0051510 FBtr0084783 2 1 1 60 3R 20944223 20944244 GAAAGTGTCTGTTGATGTAGAG 58 20944184 20944203 AAGGACATGAATCACATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tnc FBgn0039257 FBtr0084754 2 1 1 247 3R 20841625 20841736 TTTATCTGCCTCCTGTGTC 58 20841947 20841965 GATACATTTGCAGGACACG 58 NA DesignRelaxed Drosophila melanogaster 50 Rpb10 FBgn0039218 FBtr0084688 2 1 1 60 3R 20543533 20543553 TTTGGGTCTAAAGAGGTACTG 59 20543575 20543593 TTCGATAAGATCCACGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625 1 8 17 81 3R 20521108 20521126 GACGCTGATCAAGAAATGC 59 20521842 20528756 ACGAGTGATATCACCTAAGTC 58 NA Drosophila melanogaster 50 Dms FBgn0011581 FBtr0084607 1 1 1 84 3R 20168705 20168723 AGAACTCCGATCAACTGAC 59 20168834 20168852 AACAGGTCATCAGAGTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 3 5 6 83 3R 20045868 20045949 CTAGAGATTACTGGCTGCG 59 20045803 20045821 GTTGTCGTTCAGGTAGAGG 59 NA Drosophila melanogaster 50 CG13604 FBgn0039137 FBtr0084509 3 1 4 113 3R 19817577 19817769 ATCATTAGCGATACCTATGAGC 59 19816967 19817503 GAGTGAGATGGATCGACTG 59 NA Drosophila melanogaster 50 cenB1A FBgn0039056 FBtr0084368,FBtr0084369 1 2 2 83 3R 18949098 18949171 CATTGTAACGCTACTCCGA 59 18949218 18949236 TTGTACGTCTCATCTTCGC 59 NA Drosophila melanogaster 50 CG34375 FBgn0085404 FBtr0112607 2 1 1 60 3R 18832347 18832365 ATGCCTGCAACATATTTCC 58 18828724 18832323 TGGTTTGATGACCTCAAGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG17244 FBgn0039031 FBtr0084340 2 1 1 131 3R 18803188 18803206 CAATATTCCCGAAATCCCG 58 18803301 18803319 CTGGTCTGGTTATTGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17843 FBgn0038919 FBtr0084150 1 1 1 60 3R 17740577 17740596 GAAAGCTATTGCTGACTGAC 58 17740619 17740637 GCTCCCTTTATACTCTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Caki FBgn0013759 FBtr0112872,FBtr0112873,FBtr0084162 1 3 5 80 3R 17617275 17617294 AAGATAGTTCCTTCGTACCG 58 17615474 17616440 CACGAATATAAGCACCGGA 59 NA Drosophila melanogaster 50 CG31198 FBgn0051198 FBtr0084128 1 1 1 81 3R 17581769 17581787 CATCCGTATGATCAAGCAC 58 17581829 17581909 CTGATACTCGTATTTCTTCAGG 58 NA Drosophila melanogaster 50 E2f FBgn0011766 FBtr0084118,FBtr0084119,FBtr0084117 1 3 3 201 3R 17449734 17449752 AGATCAACGTCTTCCTCTG 58 17449364 17449569 GGCGTTTGAAATAATCCCT 58 NA DesignRelaxed Drosophila melanogaster 50 dmrt93B FBgn0038851 FBtr0084007 3 1 1 81 3R 16901986 16902004 ATGTTGACCACTATGCCAC 59 16902047 16902332 ATTTGCTCTGGTACTGATCTG 59 NA Drosophila melanogaster 50 TotX FBgn0044810 FBtr0083985 3 1 1 62 3R 16731158 16731177 GTGTTCTTAGGCATAGTTCC 57 16731115 16731136 GTGTTCCTCATAACTTGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TotB FBgn0038838 FBtr0083973 1 1 1 60 3R 16699994 16700014 GATATACGGGAGAAATCATGG 57 16700036 16700054 AAGATCCTTCTAGCACCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5077 FBgn0038786 FBtr0083878,FBtr0083880,FBtr0083881,FBtr0083879 1 4 4 192 3R 16148681 16148699 CCATCGAGACATTATCCCG 59 16148854 16148945 AAAGCAAGTTGCTTAATGGC 59 NA Drosophila melanogaster 50 ire-1 FBgn0038736 FBtr0113248 3 1 2 129 3R 15683401 15686382 GACAATAGCAGATGATCCTC 57 15683291 15683310 CGGTAACTTCTTAAGACTGC 58 NA Drosophila melanogaster 50 Vha13 FBgn0026753 FBtr0083804 2 1 1 193 3R 15469501 15469519 GAGGAGATCGAGAAGTTCC 58 15469267 15469285 ATGTTGTACACGTACTGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG15025 FBgn0038709 FBtr0083768 2 1 1 60 3R 15316484 15316504 CCTCTAATAAGTCGTCGACTC 59 15316444 15316463 AGTAAACTGGCATCAACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11779 FBgn0038683 FBtr0083750,FBtr0100549,FBtr0083749,FBtr0100548 3 4 4 81 3R 14981620 14981638 CTCGTCATGAGCGATAGTG 59 14981490 14981508 AGAACTTGGAGTCCTTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14285 FBgn0038674 FBtr0083711 2 1 1 69 3R 14851516 14851534 GGTCAACAATCTTTCGCAG 59 14851624 14851644 TATGATCAACTCATGGCAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33541 FBgn0053541 FBtr0091507 1 1 1 62 3R 14322818 14322837 GCTGCGTTATGAATTATTGG 57 14322775 14322793 ACACAAATTTGGTAGCACG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5265 FBgn0038486 FBtr0083407 3 1 1 60 3R 12966697 12966717 GGATGTACTTGAAACATGTCC 58 12966738 12966757 ATACTTGCACTTAAGCTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31265 FBgn0051265 FBtr0083402 2 1 1 61 3R 12954018 12954037 AAATCCCTGTGAATCAAAGC 58 12954061 12954079 TTATCCTGCCAGATTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14909 FBgn0038458 FBtr0083366 2 1 1 65 3R 12801101 12801119 GATGCAGTTGAATCCACTG 58 12801148 12801166 TAGGTTATCATGCCGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083351,FBtr0083350,FBtr0083347,FBtr0083349 3 4 6 97 3R 12484785 12536291 CTGGCTAGGTACAAATGGT 58 12484706 12484727 GATAATGATTCGTGTGGAACTC 59 NA Drosophila melanogaster 50 mRpS33 FBgn0038426 FBtr0083316 2 1 1 60 3R 12262128 12262147 TGAACTACCTCTCAAATCGC 59 12262087 12262105 ATGGACTTCTCGTTTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mtSSB FBgn0010438 FBtr0083277,FBtr0100152 3 2 2 103 3R 12030247 12030625 CCAACTACAAATATGAGAACGG 59 12030165 12030183 CTTCAAGTATTCCAGCACG 58 NA Drosophila melanogaster 50 CG6499 FBgn0038309 FBtr0113238 1 1 1 91 3R 11073838 11073911 ACCAGCTCCATCTATTCCT 59 11073765 11073783 GTAATGGACACTAGGGAGC 59 NA Drosophila melanogaster 50 Caf1 FBgn0015610 FBtr0083052 2 1 1 87 3R 11052240 11052368 ACCTCAATGGCTATTTGCT 59 11052419 11052437 ATAACCCTATGCTCCTTGG 58 NA Drosophila melanogaster 50 CG6687 FBgn0038299 FBtr0083140 1 1 1 131 3R 11032943 11032961 TCATATCCCGGCTAAATGC 59 11032768 11032849 CCATTAAGCTGAGGATAGGG 59 NA Drosophila melanogaster 50 CG3731 FBgn0038271 FBtr0083000,FBtr0083001 2 2 2 78 3R 10717534 10717552 ACACATGCTACAAGGACAC 59 10717594 10717686 TTGAAGAGCATATCCTCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG3563 FBgn0038259 FBtr0082989,FBtr0113234,FBtr0082988 1 3 3 125 3R 10616865 10616883 GTTACAGTAGTGCCTCGAC 59 10616970 10619180 GATAAGTGGCTTGTATCTTGC 59 NA Drosophila melanogaster 50 CG34388 FBgn0085417 FBtr0112629 1 1 1 117 3R 10246524 10246542 AACTAAATCTTTCGGGCCA 59 10246623 10246710 TTCTCCTTGCTCATGTCTC 58 NA Drosophila melanogaster 50 twf FBgn0038206 FBtr0082891 1 1 1 117 3R 9948582 9948701 TTCGATCGAGAATGAGCAG 59 9948782 9948800 AATATAGCAGGGCACATCC 59 NA Drosophila melanogaster 50 Dip-B FBgn0000454 FBtr0082832,FBtr0082833,FBtr0082831 2 3 3 192 3R 9609801 9609886 GAGAAGGTTCTCAAGGCTG 59 9610099 9610117 CCCTTGGATCATCGATCTG 59 NA DesignRelaxed Drosophila melanogaster 50 Dip-B FBgn0000454 FBtr0082832,FBtr0082833,FBtr0082831 1 3 3 192 3R 9609801 9609886 GAGAAGGTTCTCAAGGCTG 59 9610099 9610117 CCCTTGGATCATCGATCTG 59 NA Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 2 8 8 284 3R 9504400 9504475 AACACGACGTAAATCAGGA 58 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG10841 FBgn0038163 FBtr0082795 2 1 1 80 3R 9458460 9458539 GGACTACGAACTAATTGCAC 58 9458580 9458600 GGTATCTTCATAAAGTGCAGC 59 NA Drosophila melanogaster 50 CG12538 FBgn0038157 FBtr0082791 2 1 1 66 3R 9349193 9349211 AATTGAACAAGTGTCAGCG 58 9349145 9349163 TTTATTGGAGCACCATGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8863 FBgn0038145 FBtr0082751,FBtr0082753,FBtr0082752,FBtr0082755 1 4 5 60 3R 9210263 9210281 GAGGTTGACATTCCAATCG 58 9210395 9210413 GTTGCTTGGGATCAAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15888 FBgn0038131 FBtr0100257 1 1 1 60 3R 9112010 9112031 AATGAGAATCTACGAGTGTCTG 59 9111971 9111989 AACGTACAATTTCGTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp304a1 FBgn0038095 FBtr0082691 1 1 1 149 3R 8789869 8789889 CGAGATCCTCAATAATCAGGT 59 8790290 8790308 TCTCTTAAGTAGCGCAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG14739 FBgn0037987 FBtr0082553 3 1 1 60 3R 7874272 7874290 CATCATGAAACACTCGGAG 58 7874230 7874248 GTACGTCTTCATGCAAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31116 FBgn0051116 FBtr0082528,FBtr0113390,FBtr0113391 1 3 5 120 3R 7628395 7631757 CTTATGTATGGTCGCTATACCA 59 7628048 7628314 CCAGCAGTTCCTTATTCCT 58 NA Drosophila melanogaster 50 CG31374 FBgn0051374 FBtr0082400,FBtr0082401,FBtr0082399 2 3 3 85 3R 7264081 7264158 AGAGTATCCTCAAGGAGGAG 59 7264015 7264033 TTCGTCTAGCTTCATGGAG 58 NA Drosophila melanogaster 50 CG6764 FBgn0037899 FBtr0082403 3 1 1 79 3R 7256636 7256654 AGAAGATCACCTACGTGGA 59 7256575 7256593 TAACATCTCGAGATCCTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tws FBgn0004889 FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190 1 8 8 80 3R 5954403 5954421 CTCCAGGGATTACTTGAGC 59 5954227 5954361 TATTCATGAACCGGATAGGTC 59 NA Drosophila melanogaster 50 CG16789 FBgn0037712 FBtr0082071 3 1 1 81 3R 5393270 5393345 GATCGATCTGTTTAACGATACC 58 5393385 5393405 GTAGATCATGTCCTCATAGGC 59 NA Drosophila melanogaster 50 CG31259 FBgn0051259 FBtr0081871 3 1 1 208 3R 4351094 4351112 AGGACTAAAGCCATTCCTG 58 4351357 4351375 CATTGTCGAAACCAAACGT 59 NA DesignNoJunction Drosophila melanogaster 50 DppIII FBgn0037580 FBtr0081840,FBtr0081841 3 2 2 179 3R 4171063 4171081 AGATTCCTGTTCTTAGGGC 58 4171280 4171301 CGGATGCCTTTACTATAGTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33722 FBgn0064126 FBtr0091719 2 1 2 130 3R 4069896 4069919 CATACAGATACGTATCCTTGTAGG 59 4070007 4070026 GTCTCCAGAATCTCCAACAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7910 FBgn0037547 FBtr0081790 1 1 1 85 3R 3914237 3914255 CTGTTGGAAATAATGGCGG 59 3914301 3914376 GCATAGTATACCTTCATGTCCT 59 NA Drosophila melanogaster 50 alphaTub84D FBgn0003885 FBtr0081539,FBtr0081538 2 2 2 60 3R 3357678 3357697 AAATAGTGTCCTCGATCACC 59 3357720 3357738 GTGAGGTCCACATTTAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gfzf FBgn0053546 FBtr0114531,FBtr0091512 2 2 2 124 3R 2972597 2972676 GTACTCGAAGATGAATCCG 57 2972491 2972509 GATATAGCGTTGAATCCGG 57 NA Drosophila melanogaster 50 dpr11 FBgn0053202 FBtr0081704 3 1 1 121 3R 2358447 2358465 TTCATCATGTGGTACCACG 59 2357760 2358362 ATTAATGAGCCAATCGTGC 58 NA DesignRelaxed Drosophila melanogaster 50 Osi4 FBgn0037412 FBtr0078615 1 1 1 69 3R 2045358 2045376 AGATCAAACGTGAGGACTC 59 2044286 2044304 ACGTAGTTGTAGATCAGGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG1208 FBgn0037386 FBtr0113197,FBtr0113196 3 2 2 122 3R 1662757 1662830 TTTAATTGGTATCGCAACGG 58 1662915 1662933 ATACCAATCGTAAGGAGCA 58 NA Drosophila melanogaster 50 CG1236 FBgn0037370 FBtr0078721 2 1 1 60 3R 1563271 1563291 GACTTAATCGTAGTCTGTTGC 58 1563312 1563331 CAGTGGCATTGAAGATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 plx FBgn0004879 FBtr0078718 3 1 2 93 3R 1533896 1534232 GATGGATAACATACCCAAGCA 59 1534287 1534305 CACTAGGAACACCATCGTC 59 NA Drosophila melanogaster 50 exba FBgn0037346 FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745 3 7 7 85 3R 1423978 1423999 GGTTCTATTATTCGTAAAGGGC 58 1423648 1423932 CAGAACCGTTGACTAACCA 59 NA Drosophila melanogaster 50 CRMP FBgn0023023 FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686 1 4 4 85 3R 1400179 1400396 GAATTATCAAGTTTGTGGGTCC 59 1400442 1400460 AATGATCATCAGTCCGCTG 59 NA Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199 1 14 15 114 3R 1100031 1100465 GAGCACAACGTATTTGGTG 59 1099935 1099953 AATGGAACACCTTGAAGCT 59 NA Drosophila melanogaster 50 CG2604 FBgn0037298 FBtr0078829,FBtr0078828,FBtr0078830 2 3 3 60 3R 1047615 1047635 TCTAAGACCGGACTAATTAGC 58 1047575 1047594 GAATCTCAAACTTGATGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tacc FBgn0026620 FBtr0089955,FBtr0089953,FBtr0089952,FBtr0089954 2 4 7 83 3R 570241 570259 AAAGTTTGGAGGTCTTCCC 59 569895 570197 TTCAGTTGAGTATCCATATCGG 59 NA Drosophila melanogaster 50 pncr011:3L FBgn0083068 FBtr0091958 3 1 1 63 3L 11089808 11089826 TGCTAATTAGCGGAAGACG 59 11089853 11089871 AATGGAAGTTGGATTGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pncr008:3L FBgn0047000 FBtr0091957 1 1 1 60 3L 6213682 6213700 TTGGTTCTAAGTCTCGTCG 59 6213724 6213742 GCGATAAAGTCGAGAACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slif FBgn0037203 FBtr0078555,FBtr0078556,FBtr0078557 1 3 3 82 3L 22885585 22885671 AATCTTTGCGTCCATAATGG 58 22885716 22885734 TGTATGCTAACAGGGTTCC 58 NA Drosophila melanogaster 50 CG32454 FBgn0052454 FBtr0078529 3 1 1 60 3L 22724211 22724229 CTCCTTGACTATCCCTTCG 58 22724253 22724271 GAATAGAGATTGACAGCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33770 FBgn0053770 FBtr0091771 1 1 1 60 3L 22642228 22642246 CTACTACTTGAGGGACTGG 58 22642270 22642288 TCCACTGGTTATGAAAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11248 FBgn0037117 FBtr0078430,FBtr0078431 3 2 2 146 3L 21675715 21675789 TACAAGAAGCTCGTTCAGC 59 21675898 21675917 CTTCATATCAGACTGGCAGG 59 NA Drosophila melanogaster 50 CG7166 FBgn0037107 FBtr0078465 3 1 1 84 3L 21615745 21615842 GGAGATGTAAACTCAGAAATGC 59 21615682 21615704 CATCTCGTGGATACATAGATCTC 59 NA Drosophila melanogaster 50 CG33289 FBgn0053289 FBtr0078367 3 1 1 85 3L 21528239 21528447 GATGTTTCCGAGAAATCGC 59 21528495 21528514 GATATTGGATCCCAGTCCAC 59 NA Drosophila melanogaster 50 Pros54 FBgn0015283 FBtr0078368 1 1 1 110 3L 21530466 21530544 GATGACTCTGTCCAACACC 59 21530618 21530636 GTCAGGAGGTTTATCTCGC 59 NA Drosophila melanogaster 50 CG7611 FBgn0037094 FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362 3 8 8 110 3L 21518808 21519093 GACCTTAAGGACCTAGAGC 58 21519167 21519185 ATTGCCATCATCCAAATGC 59 NA Drosophila melanogaster 50 CG7632 FBgn0037071 FBtr0078339 2 1 1 60 3L 21298921 21298940 AGGAGTACTTCGATGAAGTG 58 21298963 21298981 TCGTGGTATTCGAACAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11399 FBgn0037021 FBtr0078277 1 1 1 95 3L 20775753 20775771 AGTAAACCCTCCTCATTGC 59 20775611 20775695 ACAATAAAGCTCAGAGGCTC 59 NA Drosophila melanogaster 50 CG6480 FBgn0036964 FBtr0074847 1 1 1 107 3L 20289634 20289716 TGGACAATGGTCTCTTCAC 59 20289545 20289563 TAAACGCTACCTTTCGGTC 59 NA Drosophila melanogaster 50 trc FBgn0003744 FBtr0074922 2 1 1 151 3L 19825365 19825383 CTCAATCGACGATACGTCC 59 19825175 19825193 TTCACTCCAAATTTCGCAC 58 NA DesignNoJunction Drosophila melanogaster 50 cyc FBgn0023094 FBtr0074924 3 1 1 110 3L 19808536 19808554 AGAAGTCAGCTAGAACCTC 57 19808285 19808303 GAATCATGGAGGAGAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 LCBP1 FBgn0036901 FBtr0074955 2 1 4 60 3L 19685850 19685868 AACTTTGCGATTGGAAGTC 58 19685469 19685828 TTGGTACATTTACTCTCGAGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14098 FBgn0036884 FBtr0074936 2 1 2 76 3L 19539057 19539245 TTGTACAGGTTCATCTGTGTC 59 19539282 19539301 ATGATTATTTGTCCCGTGTG 58 NA DesignRelaxed Drosophila melanogaster 50 Rad9 FBgn0025807 FBtr0075080,FBtr0112917 2 2 2 90 3L 18864946 18865073 GATGCCGAATATAATCCGTG 58 18864875 18864893 TGCCTCCAAAGTAAGTTCC 59 NA Drosophila melanogaster 50 CG14073 FBgn0036814 FBtr0075084,FBtr0075085 1 2 2 80 3L 18796091 18796174 TTGCTTAACAAGCTCTGTC 57 18796029 18796047 ATCTATCTTGAACTCCCGT 57 NA Drosophila melanogaster 50 CG7330 FBgn0036780 FBtr0075127 3 1 1 153 3L 18143848 18143866 CAGATACTGGGTGAGTTCG 59 18143983 18146297 CTTTGTAGTTCCGCAACAC 59 NA Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 2 8 8 121 3L 16956903 16956980 GATTCACAAGGGTCTATTGC 58 16957064 16957082 CATGGATTCCCTCCTTCAG 59 NA Drosophila melanogaster 50 CG4753 FBgn0036622 FBtr0075422,FBtr0075421 2 2 2 88 3L 16372429 16372447 TTCTGCACTACTTGGTCAC 59 16372299 16372378 GAGGCTATAGAATCCTCCCA 59 NA Drosophila melanogaster 50 th FBgn0003691 FBtr0075499,FBtr0075501,FBtr0075500 1 3 3 60 3L 16033061 16033079 GTTGTAGCTGATCTTCCGT 59 16033019 16033037 TCGTGTTGTTATCCACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6151 FBgn0036533 FBtr0075543,FBtr0075541,FBtr0075542 2 3 3 63 3L 15809068 15809087 CCGTGGTATCTCAAATATGG 57 15806715 15809042 AAAGAATGGCAAAGAAGGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG13457 FBgn0036482 FBtr0075654,FBtr0075653 3 2 2 78 3L 15121464 15121483 GATTATACGGGACCTAGCTC 58 15121300 15121318 CATCATCGTAGGTGGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13737 FBgn0036382 FBtr0075754,FBtr0075755 2 2 2 63 3L 13875756 13875774 TGGAGACCTATTTGACGGA 59 13875801 13875819 CTGTTGGGCTCAAATTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10713 FBgn0036360 FBtr0075855 3 1 1 181 3L 13422918 13422936 GTTCTACTTCGACCACCAG 59 13422755 13422773 CTAACGAGGAGTTGACACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10749 FBgn0036328 FBtr0075871 1 1 1 60 3L 12966061 12966080 CCCATCAACGTGATAGTACC 59 12966102 12966121 GATCGTATGTACCCTTTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nrx-IV FBgn0013997 FBtr0075999,FBtr0075998 2 2 2 82 3L 12146775 12146793 GCGTGTGAACTTGAATCTC 59 12146839 12147059 GTCCATCCGAGTAGAACTC 58 NA Drosophila melanogaster 50 RpL10Ab FBgn0036213 FBtr0076034 1 1 3 93 3L 11816587 11816605 ATTTGAGTAGGTCTCCAGC 58 11816662 11816772 GGAATGTGCTTCAACAAGG 59 NA InUTR Drosophila melanogaster 50 CG6024 FBgn0036202 FBtr0113164,FBtr0113165,FBtr0113166 1 3 3 89 3L 11752782 11752800 TAATCCTCATCGGACTCCT 59 11737115 11752729 GCGACTGCATGTAATAGTG 58 NA Drosophila melanogaster 50 scyl FBgn0041094 FBtr0076169,FBtr0076168 1 2 2 60 3L 11247413 11247432 GCAGTTCATGAAGAGTTTGG 59 11247454 11247473 CTTGGTGATCGTATACTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 As FBgn0061469 FBtr0076186 1 1 1 93 3L 11200361 11200379 CTTCGAAATGGTTACGGAC 58 11200224 11200304 AAAGTCGAATTCACGACTG 58 NA Drosophila melanogaster 50 CG32082 FBgn0052082 FBtr0076216,FBtr0113423,FBtr0113422 3 3 3 109 3L 11152568 11152586 AGTGGATACAGTACCAGCA 59 11152659 11152872 TCCTTAATTCGTTCCAGGC 59 NA Drosophila melanogaster 50 Elo68alpha FBgn0052072 FBtr0076232 3 1 1 124 3L 11095818 11095836 CCATGGTGTTCCTAAATGG 58 11095629 11095730 CTTTGTAAGACGCATTTCG 57 NA Drosophila melanogaster 50 CG12362 FBgn0036082 FBtr0076282,FBtr0076281 1 2 2 60 3L 10407208 10407227 AAATATCGCTCTTCAATGGC 58 10407250 10407268 GCATGTGGTTGCTATAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf2 FBgn0011836 FBtr0076361 3 1 1 85 3L 9878987 9879005 CTTAACACCTGTGGTCTCC 59 9878860 9878938 CATCTAGCACAAGTTTCGC 59 NA Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326 3 11 11 89 3L 9773789 9773875 CCTCATGAGATCTTTGTGC 58 9773928 9773946 CTCATACTTGATCCAACGG 57 NA Drosophila melanogaster 50 vsg FBgn0045823 FBtr0076398,FBtr0076400,FBtr0076399,FBtr0076401 1 4 4 72 3L 9709210 9709228 ATGGATCCTCGTTCATTGG 59 9709264 9709282 AACTTGTAGGCCACTAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8336 FBgn0036020 FBtr0076384,FBtr0076386,FBtr0076385 2 3 3 123 3L 9624228 9624300 ACAAGTTCACAGGAGATGG 59 9624387 9624405 TAGTATCGATTCGCCTTGC 59 NA Drosophila melanogaster 50 Klp67A FBgn0004379 FBtr0076499 3 1 1 219 3L 9356319 9356484 AGATCAAGAAGGCTCTACTC 58 9356059 9356077 TTGAATTTGACCAAAGGCG 59 NA DesignRelaxed Drosophila melanogaster 50 Doc3 FBgn0035954 FBtr0076521 1 1 1 80 3L 8999125 8999262 CTGGATAACAATGGTCATATCG 58 8999301 8999321 GAGATCAGAGGTTCGTATGAC 59 NA Drosophila melanogaster 50 Idh FBgn0001248 FBtr0076671,FBtr0114548,FBtr0114547,FBtr0076668,FBtr0076673,FBtr0076669,FBtr0114549,FBtr0076667,FBtr0076670 1 9 9 60 3L 8350349 8350367 TCTGAAGAAGTACGATGGA 57 8350307 8350325 GTACTGCTTGTTGTACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7197 FBgn0035866 FBtr0076715 2 1 1 61 3L 8292008 8292027 GTCTATGCCAATAAGCAGGA 59 8291966 8291984 AGTTGTCGTGAGATTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mus301 FBgn0002899 FBtr0076689 3 1 1 102 3L 8134576 8134666 TTAAGATCAATCGTGCCAG 57 8134732 8134750 ATGTGCTCTAAGGATTGGA 57 NA Drosophila melanogaster 50 CG8111 FBgn0035825 FBtr0076770 1 1 1 294 3L 7907430 7907448 TGATGTGTTCAATCCGGAG 59 7907093 7907172 TACAAACAGCAGACGAAGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 SMSr FBgn0052380 FBtr0076870,FBtr0076871 1 2 2 108 3L 7368206 7368288 AATAACAGGGCTCTCATGC 59 7368116 7368135 TATCGTATTCATTGGGCACC 59 NA Drosophila melanogaster 50 CG10107 FBgn0035713 FBtr0076952,FBtr0076950 3 2 3 117 3L 6740078 6740966 GTACAAAGATTTCTCCCGTG 58 6739980 6739998 AATCTCGAATCTGTAGGGC 58 NA Drosophila melanogaster 50 CG8368 FBgn0035707 FBtr0076976,FBtr0076977 2 2 2 60 3L 6600058 6600078 CTACCACTATCTGTCTAACGA 58 6600100 6600118 CTTCGTGCTGAATATCCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)mbn FBgn0002440 FBtr0100355 1 1 2 114 3L 6118570 6118588 GGACGTTATGAGACAAGCT 59 6118410 6118492 TCGGATGTTGTGTTGACTC 59 NA Drosophila melanogaster 50 Bj1 FBgn0002638 FBtr0077075 1 1 3 112 3L 5925537 5925555 CTAGACAACGTGGAACTCC 59 5925355 5925373 ATTAGTCAGGGCCTTTCTG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Pmi FBgn0044419 FBtr0091713,FBtr0091712 1 2 2 120 3L 5773860 5773941 TGTTGTCAATATCAGGTGGA 58 5774024 5774042 TACGGTGCAAGTATTTGGT 59 NA Nonspecific Drosophila melanogaster 50 shep FBgn0052423 FBtr0077172,FBtr0077175,FBtr0077173,FBtr0077174 3 4 4 80 3L 5156244 5156459 CAGGTAGATGATCAGACTTCG 59 5156184 5156204 TTTGTATGAGGTTACTCCCAG 59 NA Drosophila melanogaster 50 CG11357 FBgn0035558 FBtr0073310,FBtr0113143,FBtr0113142 3 3 3 196 3L 4551753 4551771 AGTGGTTCAACGAGAAGTG 59 4551929 4552113 CCATTTGGAACGATATGAACG 59 NA Drosophila melanogaster 50 CG18675 FBgn0040696 FBtr0073218 1 1 1 263 3L 4174526 4174544 AATACCGAGGATCTGACTG 58 4174832 4192200 CTCAAGTTTCTTGAGTTCCT 57 NA DesignRelaxed Drosophila melanogaster 50 Gr64d FBgn0035486 FBtr0073198 3 1 2 96 3L 4032380 4032469 ATACCATGGGCTCTTTGAG 59 4032529 4032547 GTTTCCCGGATGATATGGG 59 NA Nonspecific Drosophila melanogaster 50 Acp63F FBgn0015585 FBtr0073182 2 1 1 92 3L 3816160 3816179 CCCGATTGTAACTTAGATGG 57 3816033 3816105 TAGTTCGATGAATCCTGGT 57 NA Drosophila melanogaster 50 CG14973 FBgn0035451 FBtr0073130 1 1 1 220 3L 3506997 3507015 TAAGCTGGAAGATGTCTGC 59 3507199 3507307 GATTCTCCGCCTTAATCGT 59 NA DesignRelaxed Drosophila melanogaster 50 rasp FBgn0024194 FBtr0073029 3 1 1 60 3L 3162534 3162554 TCTTAGTGTAAACCTGGACTG 59 3162576 3162594 GTAGCTGGCTATCAATGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1271 FBgn0035392 FBtr0072989,FBtr0072986,FBtr0072988,FBtr0072987 2 4 4 63 3L 3054212 3054230 AACGATGTGTTCTTCATGC 58 3054323 3054341 CTGACCGATAATCGTTCAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG2113 FBgn0035384 FBtr0072979 3 1 1 60 3L 2995684 2995703 ATGGGTTCGTAGACTTTAGC 59 2995726 2995744 ACGGGTTCTGTATCATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1139 FBgn0035300 FBtr0072845 2 1 1 157 3L 1972191 1972274 TCCCACTACAAACTTTCAGAC 59 1972393 1972411 AAATGTGCAGGCAGTAGAG 59 NA Drosophila melanogaster 50 CG12004 FBgn0035236 FBtr0072746,FBtr0113122,FBtr0072745 3 3 3 143 3L 1573249 1573267 TTCATCTGCATCGAAATGC 58 1573608 1573688 CATTGTTTCCTTAAGACTGCTG 59 NA Drosophila melanogaster 50 CG9133 FBgn0035198 FBtr0100645,FBtr0100646 2 2 3 179 3L 1254314 1254405 CATGAACGAGAATGTGGAC 58 1254548 1254566 TTCTTGAGTACGCGTATGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG9130 FBgn0035197 FBtr0072655,FBtr0072657 3 2 2 117 3L 1253652 1253670 AAATTCGGTACAAGGAGCC 59 1254103 1254121 TACTTCACCAGTAAGTGGC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 LysS FBgn0004430 FBtr0072631 1 1 1 101 3L 1227995 1228013 TCAACGATCTGTACTGGTG 59 1228078 1228096 GGACAGAGTTGGTGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17129 FBgn0035151 FBtr0072612,FBtr0072614 3 2 3 142 3L 679821 679908 CAAGAATTTAGCGACCTGG 58 679697 679715 TCTCTTCACCTTTCACCTC 58 NA InUTR Drosophila melanogaster 50 Reg-2 FBgn0016715 FBtr0072561 2 1 1 144 3L 606251 606269 GATTATCCCAACTTTGGGC 58 605660 605678 GCTCAATTAGGTGGTTGGA 59 NA DesignNoJunction Drosophila melanogaster 50 E(bx) FBgn0000541 FBtr0072522,FBtr0072521 1 2 3 87 3L 234500 234582 TTAAAGAGCCAATGGATCTC 57 234432 234453 GTCATATCGCCTATAAACTCAG 58 NA Drosophila melanogaster 50 Lsp1gamma FBgn0002564 FBtr0072463 1 1 1 60 3L 67406 67425 ACGATGAAACTAAGATGACC 57 67447 67466 TAGTACCAGTAAGCATTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6a15Psi FBgn0033303 FBtr0088689 2 1 1 60 2R 4457396 4457417 TGAGAAGGGAACTTCATTACTG 59 4457436 4457456 ATATAAGTGCGGATCGTAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 emp FBgn0010435 FBtr0072400,FBtr0072402,FBtr0072401 1 3 3 88 2R 20865282 20865300 GACAACATGTGCTTCTGTC 59 20865154 20865230 ATGGGAGAGTCGTATTGAC 58 NA Drosophila melanogaster 50 Mmp1 FBgn0035049 FBtr0072330,FBtr0072329 3 2 2 213 2R 20563637 20563726 GAGATCAAGTTCGTGGAGAG 59 20563443 20563461 TCTGATCTGAGTGGGAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13569 FBgn0034979 FBtr0072283,FBtr0072284 2 2 2 99 2R 20012300 20012318 ACTTCACCATCATCGTCAG 59 20012161 20012237 AAGTGGCAGAAGTTAGAGC 59 NA Drosophila melanogaster 50 eIF-5A FBgn0034967 FBtr0072172,FBtr0072173 1 2 2 64 2R 19946638 19946656 TAGTGGCAAGGACTTACTG 58 19946746 19946764 TAATTGCGATAACGCACTC 58 NA DesignNoJunction Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 3 8 8 81 2R 19817553 19817571 GGATATCATGGAGAAGCCC 59 19817426 19817508 TCCAATAGCCATGTAACGG 59 NA Drosophila melanogaster 50 CG13562 FBgn0034928 FBtr0072135 2 1 1 139 2R 19791999 19792017 ATCCTAACACTGTTCAGGC 59 19792120 19792195 ATATCGCACGTGTCTATGC 59 NA Drosophila melanogaster 50 CG5554 FBgn0034914 FBtr0072126 1 1 1 126 2R 19733346 19733364 CTACTTCGTGAAGAAGCAG 57 19733454 19733659 GTTGAAGTCCTTCAGAGTG 57 NA Drosophila melanogaster 50 l(2)dtl FBgn0013548 FBtr0072085 1 1 1 60 2R 19591330 19591348 ATTGCTACAATCTGGCCTC 59 19591372 19591390 TTAAGGAGTCCCTTGTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alphaPS5 FBgn0034880 FBtr0072063 2 1 1 82 2R 19447452 19447473 CATTTGGTACATCATTCTGTCC 59 19447516 19447586 AGAACCGAAGCTTGTAGAG 59 NA Drosophila melanogaster 50 CG3906 FBgn0034871 FBtr0072121 2 1 1 68 2R 19399432 19399450 ATGCGGTACTACAACACAG 59 19399382 19399400 CTTGTAGGCATCCGTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13544 FBgn0034826 FBtr0071973 1 1 1 126 2R 19027279 19027351 GAACTCAAACTGCATGTCG 59 19027171 19027191 GAAAGTTTCCGTATCCTTTCC 58 NA Drosophila melanogaster 50 RpL23 FBgn0010078 FBtr0071897 2 1 1 149 2R 18742009 18742028 ATCTTGGAATAACCAGTCCG 59 18742257 18742275 ATCACGTACAGGTTCTTGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 blw FBgn0011211 FBtr0071883 3 1 1 105 2R 18687968 18688079 GATCGTCAGACTGGTAAGAC 59 18688147 18688165 CGACGTAGATGCAGTACAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG11362 FBgn0034737 FBtr0071836 1 1 1 60 2R 18450150 18450169 CATTACAAATGTGGACAGGG 58 18450190 18450210 GAAGTACTGAGTAATCTTCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GlcT-1 FBgn0067102 FBtr0071755 2 1 1 60 2R 17964228 17964249 AGATCAATAACATCCATCCAGG 59 17964268 17964288 TCTGAGATCATCACAAAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30284 FBgn0050284 FBtr0071684,FBtr0071685 2 2 2 60 2R 17538445 17538463 GGTCAAGACCTTTATCGAG 57 17538403 17538422 TAGAGATTGACAGAACTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9437 FBgn0034599 FBtr0071575 3 1 1 60 2R 17057113 17057132 CACAATTCATCCGGAAATCG 59 17057155 17057173 AGACTCAATAGGCTCAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34396 FBgn0085425 FBtr0112644 3 1 2 126 2R 16981403 16987725 TTTACACGACCATAGGTTACG 59 16987813 16987831 AATAACTTGCCCAGATCGG 59 NA Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0086456,FBtr0086451,FBtr0100392,FBtr0086457,FBtr0086454 3 14 15 97 2R 15359155 15359173 ACAAGTGGATGAACATGGG 59 15359234 15360334 GACTAGAGCTTCTATCCGC 59 NA Drosophila melanogaster 50 RpL11 FBgn0013325 FBtr0086533 3 1 1 80 2R 15330539 15330557 CATCAAGTACGATCCCTCC 59 15330601 15330833 TGGTTCACATTGTAGCCAG 59 NA Nonspecific Drosophila melanogaster 50 endoB FBgn0034433 FBtr0113097,FBtr0113098 3 2 4 83 2R 15196011 15196540 GTCTCCACAGTGATCTTCG 59 15195946 15195964 CAGACCCTTCAATAGACCC 59 NA Drosophila melanogaster 50 CG15087 FBgn0034380 FBtr0086647 2 1 1 81 2R 14596613 14596683 CACATACTGATTGCTCTGG 57 14596550 14596568 ATATCTCAGTTTCGTGGGT 57 NA Drosophila melanogaster 50 sec6 FBgn0034367 FBtr0086709 2 1 1 60 2R 14514314 14514332 AACGTAATCGAGCTGAAGG 59 14514353 14514374 GAGTGAAGTATTTGATCTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dgp-1 FBgn0027836 FBtr0086774,FBtr0086773 1 2 2 187 2R 14058156 14058237 CTTTATGGAAATAAGGGTTGCC 59 14057990 14058008 CATCAAAGCCGAGAATGTC 58 NA Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 2 8 8 98 2R 14032393 14032483 CAAGGAAAGAATTCTGAGAAGC 59 14032542 14032560 AATCATCGGATACAGACGC 59 NA Drosophila melanogaster 50 rdgBbeta FBgn0027872 FBtr0086888 2 1 1 81 2R 13584372 13585343 CTAACAGAATACACGTGTTCC 58 13584311 13584329 CTGTGCTGCCATTATTGTC 59 NA Drosophila melanogaster 50 CG14478 FBgn0028953 FBtr0086921,FBtr0086922 1 2 2 60 2R 13351432 13351452 GCAGGATCATAATTGGATGTC 58 13351474 13351492 TTCGGCATTGAGAAGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12699 FBgn0046294 FBtr0086995 2 1 1 91 2R 13134399 13134417 CAGAATCAGATGCAGAGGA 58 13134326 13134344 TATATCCACACGGTTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS15 FBgn0034138 FBtr0087124,FBtr0087123 2 2 2 100 2R 12458179 12458197 CATGATCATCGTACCCGAG 59 12457856 12457874 GGTAGTGACCGATCATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Rho1 FBgn0014020 FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216 1 7 7 81 2R 11992618 11992639 CATACTGATGTGTTTCTCAGTG 59 11992681 11993233 AAAGTGTTTGACCTCTGGG 59 NA Drosophila melanogaster 50 CG8192 FBgn0034030 FBtr0087354 2 1 1 145 2R 11433072 11433090 TAAAGATCCAGGGACAGCT 59 11432881 11432963 GTCGGCATAGTATCCAGAG 59 NA Drosophila melanogaster 50 mus210 FBgn0004698 FBtr0087373,FBtr0087374 2 2 3 111 2R 11200223 11200241 AAGTCAACGCGAATAAAGC 59 11200316 11202134 ATAGATCTGCATCTGCCAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12424 FBgn0033987 FBtr0087409,FBtr0087410,FBtr0087411 3 3 3 101 2R 10865415 10865739 TGGTGCTCATTAAGGTTCG 59 10865804 10865822 TGTAATGGCTGAAGGTCAG 59 NA Nonspecific Drosophila melanogaster 50 CG12424 FBgn0033987 FBtr0087409,FBtr0087410,FBtr0087411 2 3 3 101 2R 10865415 10865739 TGGTGCTCATTAAGGTTCG 59 10865804 10865822 TGTAATGGCTGAAGGTCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Dro FBgn0010388 FBtr0087436 1 1 1 232 2R 10633493 10633511 CAATGAAGTTCACCATCGT 58 10633707 10633725 TTGATCGGATGACTTCTCC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12860 FBgn0033954 FBtr0087480 1 1 1 66 2R 10553762 10553780 CATACCCTACAAGCCAGAG 59 10553714 10553732 CTTGTCATCCAAACGTACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arc2 FBgn0033928 FBtr0087547 3 1 1 64 2R 10249877 10249898 TTCCTACCAGATATACATGGAG 58 10249923 10249941 ATGAGTCGATCACTTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33156 FBgn0053156 FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681 2 5 5 83 2R 9436514 9436533 ATTATGGTGACTCCCATCTG 58 9436391 9436470 TACTGATATCTTCAGCTCCAC 58 NA Drosophila melanogaster 50 EfTuM FBgn0024556 FBtr0087670 2 1 1 63 2R 9396194 9396212 TTCGTGGGCTATAACAAGG 59 9396239 9396257 GAATCTGGTGGAACATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mars FBgn0033845 FBtr0087668 2 1 1 60 2R 9391977 9391995 CTTTACGCGTTACTCAGTG 58 9392019 9392037 CTGAGGATCCAAGATGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(z)2 FBgn0008654 FBtr0087793 2 1 1 82 2R 8887544 8887657 CGGAACTTATAAGCTTATCCCT 59 8887700 8887718 GTAAATAGTGGGAGGCACC 59 NA Drosophila melanogaster 50 CG30487 FBgn0050487 FBtr0087802 1 1 1 60 2R 8825248 8825268 GTTAATTTCGAAGAGCTGTCC 59 8825208 8825229 GAAGATTCTTGGGTATGTTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30486 FBgn0050486 FBtr0087817 3 1 1 164 2R 8735945 8735964 ATGGATGATGTTAAGGGCTG 59 8735749 8735767 GTACTGATAGAGTCCGCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG33627 FBgn0053627 FBtr0091604 2 1 1 179 2R 8298799 8298817 TAAGTTGTTCATGCCTCGT 59 8298960 8299026 TAAACGTAAAGGCCCTTGG 59 NA Drosophila melanogaster 50 RpS11 FBgn0033699 FBtr0088005,FBtr0088007,FBtr0088006 3 3 3 127 2R 8087085 8087348 CTGTGTTCAGAGATGTTGAG 58 8086977 8086996 CTTCTTGAAGCTCTTCTTGG 58 NA Drosophila melanogaster 50 CG13176 FBgn0033692 FBtr0087989 2 1 1 60 2R 8069064 8069082 CAGTTCGGTGATTTACCAG 58 8069104 8069124 GCACTATTATATCCTGCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8290 FBgn0026573 FBtr0088042 2 1 2 103 2R 7860537 7862870 TAGCTGCTGATAAACAAGC 57 7862937 7862955 CATGTCATCTTCGTTGTCC 58 NA Drosophila melanogaster 50 CG8979 FBgn0033669 FBtr0088053,FBtr0088051,FBtr0088052 2 3 3 131 2R 7855439 7855457 CTAGACCCTGTATTCACGG 58 7855269 7855344 ACTTGGAATGAAGGATCCG 59 NA Drosophila melanogaster 50 CG8986 FBgn0033658 FBtr0088062 2 1 1 90 2R 7750308 7750326 ATGTTCTGGTCAAGAAGCC 59 7750236 7750254 ATGAAGTAGACCTCTGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13193 FBgn0033650 FBtr0088029 2 1 1 135 2R 7656803 7656821 GTTCAAGTACGGGAATCTG 57 7656979 7656997 GTAATTTGTGTCGTGGAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13220 FBgn0033608 FBtr0088116 1 1 1 60 2R 7172086 7172104 CTACTACATACCGCTGCAC 59 7172128 7172146 GTTCATAACATTCACCGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr47Eb FBgn0033598 FBtr0088112 2 1 1 101 2R 7142989 7143008 TATGTACAGCTACATCGACG 59 7143072 7143090 ATCTCCTTGGGAATGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30015 FBgn0050015 FBtr0088243,FBtr0113356,FBtr0113357,FBtr0088242 1 4 4 156 2R 6730705 6730725 GATATACTGCGATCACATCAC 58 6730477 6730588 GAATGGAAGTCTCCAATGTC 58 NA Drosophila melanogaster 50 CG12325 FBgn0033557 FBtr0088227 2 1 1 80 2R 6713098 6713181 TGGTGAAGAGATTGCTGTG 59 6713224 6713243 ATAGTAGTAACTTGGCCAGC 59 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 3 9 9 198 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349188 6349206 CTTAGTACAGTCCACAGCC 59 NA DesignRelaxed Drosophila melanogaster 50 Hdc FBgn0005619 FBtr0088333 2 1 1 106 2R 6131259 6131280 GATATTGTCAAGGATTGGATGG 58 6131346 6131680 TTCTCCTTGGTTTCCTTGAG 59 NA Drosophila melanogaster 50 dap FBgn0010316 FBtr0088470,FBtr0088469 3 2 2 155 2R 5600928 5600946 TCAATTCCTCGCTAGAGTC 58 5601064 5602430 GCTCCTTCATGAATTCTGTG 58 NA DesignRelaxed Drosophila melanogaster 50 Mmp2 FBgn0033438 FBtr0088500 1 1 2 139 2R 5545211 5545229 TGACATGAAAGAGTCACGA 58 5530973 5545110 GATACATACCCATCAAGAAGG 57 NA Drosophila melanogaster 50 CG1809 FBgn0033423 FBtr0088520 2 1 1 60 2R 5450898 5450987 CAATGGTTATCCTTATCGTGAC 58 5451007 5451026 ATTATCATCCGCCAGTTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 wun FBgn0016078 FBtr0088553,FBtr0088552 3 2 2 182 2R 5291962 5296734 TTTAATCTTGCTCTGCGCT 59 5291417 5291816 TCCACGATGAATATCACGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG2063 FBgn0033400 FBtr0088600 1 1 1 175 2R 5173218 5173236 CTATTACGAGTCCTTGGCG 59 5172997 5173015 TCTTAACAACGGTTGACGA 59 NA DesignNoJunction Drosophila melanogaster 50 ltd FBgn0002567 FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934 3 5 5 112 2R 5066195 5066214 AGATGGATGAGTATGTGAGG 58 5066041 5066123 GATGAGTATCTTATTCACGAGG 57 NA Drosophila melanogaster 50 ltd FBgn0002567 FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934 1 5 5 108 2R 5066192 5066210 GGATGAGTATGTGAGGGAG 58 5066041 5066123 GATGAGTATCTTATTCACGAGG 57 NA Drosophila melanogaster 50 Su(var)2-10 FBgn0003612 FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578 1 9 9 80 2R 5005945 5006020 TCATAGATGGCTACTTCCAG 58 5006060 5006081 CATCCTGATGAAGTTGAATCTC 58 NA Drosophila melanogaster 50 CG30382 FBgn0050382 FBtr0088894 1 1 1 250 2R 3718957 3719037 CTCTACCAAGTGGAGTACG 58 3718437 3718455 TACTTGTAGCGGAAGTTGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Rpt1 FBgn0028687 FBtr0088947 2 1 1 60 2R 3541239 3541259 CGACATTGAGCTTCTAAAGAC 59 3541199 3541219 GATGCTCTTGATGGATTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111097 1 1 60 87 2R 3233833 3233851 GACATGCTGGGAACTACTC 59 3219876 3233782 CTGGGAGGTACATTGACAG 59 NA Drosophila melanogaster 50 CG12831 FBgn0033141 FBtr0089057 1 1 1 73 2R 2961010 2961028 CAATTACGCATCCATCAGG 58 2960955 2960974 AATTGGTGGATAACCTTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12836 FBgn0033140 FBtr0089037 1 1 1 177 2R 2956248 2956762 AAGATGTTCGCAGATAACC 57 2956903 2956921 GGTGTGAAAGAACTTCCAG 58 NA Drosophila melanogaster 50 CheB42b FBgn0066293 FBtr0086192 3 1 1 101 2R 2831081 2831099 CGACAAGAACCAGTATTGG 58 2830838 2831016 TGTACCAGAACGGTATCAG 58 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086201,FBtr0086198 2 2 11 82 2R 2764774 2764792 TCAGCCATCATACACAAGG 59 2764016 2764728 AGGCTCATAAACATACCCG 59 NA Drosophila melanogaster 50 ZIP1 FBgn0033096 FBtr0086139 2 1 1 70 2R 2604233 2604251 GAGATCCTCATTGAGAGCC 59 2604181 2604199 AACATTAGAGCGAATCCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha16 FBgn0004145 FBtr0086150,FBtr0086153,FBtr0086151 3 3 4 81 2R 2519556 2519575 CTTCTTCGGAGTTATGGGAG 59 2515389 2515407 GGTACCAGACTTAGCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 bin3 FBgn0033073 FBtr0085993,FBtr0085992 2 2 2 81 2R 2126343 2126361 GGTAGGATTCAGTCACAGC 59 2126405 2126496 TGCATACAACTGTATGGGTC 59 NA Drosophila melanogaster 50 SCAP FBgn0033052 FBtr0086027 3 1 1 99 2R 1914899 1914917 GTAAGACTAGCCCATCAGC 59 1914762 1914836 TGAGGCAATACACCTTGAG 59 NA Drosophila melanogaster 50 gus FBgn0026238 FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753 2 6 6 62 2R 1005304 1008282 TTGGTGGATTAGATCCCGA 59 1005260 1005279 TTTGACGAATTGTTCTTCGG 59 NA DesignRelaxed Drosophila melanogaster 50 gus FBgn0026238 FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753 3 6 6 101 2R 1005301 1008279 GTGGATTAGATCCCGAACC 59 1005218 1005236 GAAGCTGTTGAATGTGCTC 59 NA Nonspecific Drosophila melanogaster 50 snoRNA:Psi18S-525b FBgn0083037 FBtr0113541 1 1 1 63 2L 20418734 20418752 AACTAGAAAGACGAACGGC 59 20418779 20418797 CACGAACACAAGTCATCTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41120 FBgn0069931 FBtr0111231 2 1 1 72 2L 22667742 22667760 TGTTAGGAATTGCTGGTGG 59 22667688 22667706 CGTAAGGCATTAATACCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His4:CG33889 FBgn0053889 FBtr0091893 1 1 1 60 2L 21484232 21484250 GAACGTAATTCGTGATGCC 59 21484190 21484208 GGCTGTAACTGTCTTCCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp39D FBgn0032943 FBtr0081515 3 1 1 92 2L 21356673 21356795 GGGTATACAGGAGCTACGA 59 21356851 21356869 AGTTCTTGTGAAGCATGGT 59 NA Drosophila melanogaster 50 CG31988 FBgn0051988 FBtr0081490 1 1 1 131 2L 21201885 21201903 ATTACGAGGACCTCTTTGC 59 21201772 21201791 AGGTTATAGGATTCTCGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9320 FBgn0032882 FBtr0081409 3 1 1 85 2L 20753100 20753185 CTACTTTAAGGAATACGTGGAC 58 20753231 20753249 CCAGATTCAGCTCAAACAG 58 NA Drosophila melanogaster 50 CG17470 FBgn0032869 FBtr0081406 2 1 1 60 2L 20642844 20642862 GGTGACCAACATAGTGGAC 59 20642802 20642820 AGAAATCGGATTCTCTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33120 FBgn0053120 FBtr0081118 1 1 1 60 2L 18844261 18844282 CCTTTGCTGATGTTATCATTCC 59 18843472 18843491 GCACATAGTTGGATAGTTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG10336 FBgn0032698 FBtr0081095,FBtr0081094 2 2 2 62 2L 18689946 18689965 GATAGTGGAGCCTAAGAAGC 59 18689990 18690008 AGTGTTTCCACAGTGAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31787 FBgn0051787 FBtr0081055 3 1 1 60 2L 18285300 18285320 CTTCGATAATACCATCAGCAC 58 18285260 18285279 AGCTACTTCAAGAGTAAACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31787 FBgn0051787 FBtr0081055 1 1 1 60 2L 18285141 18285159 GCAAGATCCATGTGAACCT 59 18285099 18285118 TCTATCGCTCGAATGAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4278 FBgn0014092 FBtr0080834 2 1 1 60 2L 16327492 16327510 GTGGGATAAGAAGAGTGGT 58 16327534 16327552 GCTGATGATATTCACTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34167 FBgn0085196 FBtr0112358 3 1 1 67 2L 16003433 16003452 TTTCTAGGATGAGTTGTGCT 58 16003385 16003403 CTTACAACCAGACCCACAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4793 FBgn0028514 FBtr0080794 1 1 2 84 2L 15926120 15926141 GATCATGTTATCAGGCTTAGTG 58 15926990 15927008 TTATGGGATTATGGAGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31821 FBgn0051821 FBtr0080809 1 1 1 60 2L 15901177 15901195 TCAAAGGCATACTTCAGGG 59 15901135 15901153 TTTATCCAGTACATCCCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)35Di FBgn0001989 FBtr0080772 1 1 2 60 2L 15750553 15750574 CTACTACTTCAAGTACAACCAG 57 15750514 15750535 GTAATAGCCAACTTGAATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15266 FBgn0028860 FBtr0080708 3 1 1 63 2L 15256672 15256690 AACACAGAAGCTCACAGAC 59 15256768 15256786 CCTCAATTTGGGTGATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dyn-p25 FBgn0040228 FBtr0080693,FBtr0080694 3 2 2 102 2L 15006135 15006153 CAATTCAGCAAGGGAATCG 59 15006219 15006237 ACACATAGGATCCAATGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ance-2 FBgn0032535 FBtr0080554 1 1 1 89 2L 13910656 13910726 TTGGAGAACTCACTTTGGA 58 13910779 13910797 TAGAGCATAGTATCGCCAG 58 NA Drosophila melanogaster 50 CG31845 FBgn0051845 FBtr0080533 2 1 1 140 2L 13777621 13777639 TGCAAACTTTGCGAATCAC 59 13777743 13777761 CTGAACTCTGTCAGGTAGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9263 FBgn0032530 FBtr0080515 1 1 1 60 2L 13542197 13542215 ATTGGTACGGATGGATGTC 59 13541967 13541985 ATCTCAACATCGTCTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5204 FBgn0032473 FBtr0080433 3 1 1 83 2L 13162314 13162333 CACTGATCTCAGTTATTGCG 58 13162436 13162454 AAATCTTCGGGTTCCTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020 3 17 17 87 2L 12723993 12724013 AAGACCTATCAGATCAGACAG 58 12724062 12724215 ATTTGAGCACCTTAATGCC 58 NA Drosophila melanogaster 50 CG31759 FBgn0051759 FBtr0080349,FBtr0080348 2 2 2 60 2L 12208525 12208545 CTGCAGGTATTAGATACGGTC 59 12208567 12208585 TTAGGGATGAAATCCACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-thr FBgn0027081 FBtr0080333,FBtr0080332,FBtr0080331 1 3 3 63 2L 12104541 12104694 ATACTCGCAAGGAACTCAG 59 12104721 12104739 TTCTCCCAGAAGACATTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG6712 FBgn0032408 FBtr0080364 2 1 1 64 2L 12095332 12095350 CCTGAAACTACGTTCCCTG 59 12095286 12095304 TTATCCAGGCATAGTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tom70 FBgn0032397 FBtr0080311,FBtr0080309,FBtr0080310 2 3 3 60 2L 12037588 12037606 CACCAAGGATATGAACGAG 57 12037546 12037565 GAACATCTCCAGGATACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16965 FBgn0032387 FBtr0080284 1 1 1 232 2L 11983091 11983164 AAGGGAGCTAGATTTCCCT 59 11983360 11983378 TTGGTGGAATCATCACAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG6509 FBgn0032363 FBtr0080246,FBtr0080247 3 2 2 80 2L 11511223 11511241 CGGTGTATGATGAGGAACC 59 11510833 11511182 GAGTCACATACCTTAGAGTCTC 59 NA Drosophila melanogaster 50 CG4713 FBgn0032342 FBtr0080197 2 1 1 81 2L 11109226 11109244 GGAATCAGCTACAATGTGG 58 11109288 11109365 AAGATTCATCATTGAGCAGG 57 NA Drosophila melanogaster 50 Nos FBgn0011676 FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486 1 9 10 160 2L 10831340 10831358 GTCACAGGATTATCGGTCG 59 10826070 10830602 TCGAGCAGGAAAGAATCTC 59 NA Drosophila melanogaster 50 CG6431 FBgn0032289 FBtr0080109 1 1 1 80 2L 10727686 10727706 GACTGTCTTCATAATACACGG 58 10727748 10727846 CGGGATAGGTAAGCATCTC 59 NA Drosophila melanogaster 50 CG17108 FBgn0032285 FBtr0080127 1 1 1 168 2L 10694030 10694048 ATAGTGCTGAGTGTTTGTG 57 10693880 10693898 CACCAGATCCATAACCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6113 FBgn0032264 FBtr0080093 3 1 1 129 2L 10530139 10530157 GATACATCCTCACCTTGCA 59 10530250 10530326 TAGAGCAGGTAACCAAGTC 58 NA Drosophila melanogaster 50 RluA-1 FBgn0051719 FBtr0080040,FBtr0080039,FBtr0080041 3 3 3 80 2L 10464363 10464384 TATATCCATGTTCAAGAGCACC 59 10464242 10464324 CTATGATGAACAACGGAAGTG 59 NA Drosophila melanogaster 50 CG31716 FBgn0051716 FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012 2 6 6 95 2L 10400665 10400738 GAAGCAGAGTAACAGATGC 58 10400797 10400815 TTAATATGGGTGCTTGCTG 57 NA Drosophila melanogaster 50 CYLD FBgn0032210 FBtr0080068,FBtr0080071,FBtr0080072,FBtr0080070,FBtr0080069 3 5 5 81 2L 10296849 10296946 TTTCTAAAGCTAAGCTCGGG 59 10296787 10296808 CACTCGGTAATGTTAACTTCTC 58 NA Drosophila melanogaster 50 CG34048 FBgn0054048 FBtr0100103 3 1 1 155 2L 10126129 10126147 CAGAGTTATTCCGCATCCA 59 10125876 10126011 ACGTACTTTCTGTCTTTCCA 58 NA Drosophila melanogaster 50 CG34048 FBgn0054048 FBtr0100103 1 1 1 151 2L 10126125 10126143 GTTATTCCGCATCCAAAGG 58 10125876 10126011 ACGTACTTTCTGTCTTTCCA 58 NA Drosophila melanogaster 50 nAcRalpha-30D FBgn0032151 FBtr0079913,FBtr0079914,FBtr0079915 1 3 6 80 2L 9807360 9807378 TGCTAATCTCATCGATGGC 59 9802426 9807316 GAATTGTAACTCCCAGCGT 59 NA Drosophila melanogaster 50 nAcRalpha-30D FBgn0032151 FBtr0079916 3 1 6 84 2L 9798301 9806458 CTGTTCCTCTTATAGGCACC 59 9798236 9798254 TAGTTGAGCACCACTACTG 58 NA Drosophila melanogaster 50 Pka-C1 FBgn0000273 FBtr0079851,FBtr0079852 1 2 3 112 2L 9685193 9696199 TACATCAGCCATTTCCCTC 59 9685099 9685118 TTCAAATCGTCTTCCAAGTC 58 NA InUTR Drosophila melanogaster 50 CG33299 FBgn0053299 FBtr0079845 3 1 1 60 2L 9657070 9657088 GAAGATACCCTACACCGTC 58 9657112 9657130 GACGGGATAAGGTTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gcm2 FBgn0019809 FBtr0079838,FBtr0079837 3 2 2 85 2L 9611426 9611446 GATTAGCAAGGTTCTTAAGCG 59 9611493 9611570 TGCCACAGGCATTATACTG 59 NA Drosophila melanogaster 50 Ggamma30A FBgn0028433 FBtr0079796,FBtr0079797,FBtr0079795 3 3 3 163 2L 9272595 9291061 AATCCATAGCAGAAATGCG 58 9291185 9291206 CTGGTTATCATAATTATGGCGG 59 NA InUTR Drosophila melanogaster 50 CG7781 FBgn0032021 FBtr0079609 1 1 1 60 2L 8322790 8322808 GATTACGCAGATCATCGAG 57 8322677 8322695 CCTAATCACACGGCTATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7787 FBgn0032020 FBtr0079601 1 1 1 148 2L 8320480 8320498 TTGCAACTGTTTGATGCTG 59 8320680 8320698 TCATCATGTCCTTGACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7870 FBgn0032012 FBtr0079614 1 1 1 109 2L 8302545 8302563 CTCAGTGTCATCGTACCAG 59 8302263 8302281 TATGTGAAATTGGGAGTGC 57 NA DesignNoJunction Drosophila melanogaster 50 Btk29A FBgn0003502 FBtr0079616,FBtr0112836,FBtr0079617 2 3 6 142 2L 8298083 8298102 CTTTCAGCTACTTCGATGTG 58 8284050 8284128 TTGGAACGGATAACCATCC 59 NA Drosophila melanogaster 50 CG8349 FBgn0032003 FBtr0079594 1 1 1 60 2L 8216175 8216194 AATCTTCGAAAGGTACTGGG 59 8216217 8216235 CTAGCTCGCATAGAAATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5973 FBgn0031914 FBtr0079446,FBtr0079448,FBtr0079447 2 3 3 127 2L 7444741 7444759 GATCTCCCATATTGAGGCG 59 7444849 7444935 TGTCAGCCAGTTCATAATCC 59 NA Drosophila melanogaster 50 CG5181 FBgn0031909 FBtr0079467 3 1 1 61 2L 7409419 7409440 GATATTGTCAGACTGACAAAGG 58 7409379 7409399 GAATAAAGGGTCAGACAATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sip2 FBgn0031878 FBtr0079360,FBtr0079357,FBtr0079361,FBtr0079359,FBtr0079358 1 5 5 60 2L 6962872 6962890 AGTTCTTACGAAACAGCCA 59 6962830 6962848 ATTCGTCGACGTTTAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9507 FBgn0031808 FBtr0079255 3 1 1 63 2L 6382413 6382431 ATCCTACGTAAGCTCACTG 58 6382458 6382476 GTTCTCAGCCAAGATTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hoe2 FBgn0031649 FBtr0077394,FBtr0114514 2 2 2 80 2L 4935314 4935333 GCTTTGGATTTCTGACTGTG 59 4935176 4935274 GAAGTATATCCTGGAACACCTG 59 NA Drosophila melanogaster 50 CG2950 FBgn0031637 FBtr0077411,FBtr0077409,FBtr0077410 2 3 3 87 2L 4845309 4845327 CAAACCGACCAAGATTCCT 59 4845145 4845259 CTTGATGCCCATTACTTTGC 59 NA Drosophila melanogaster 50 CG15435 FBgn0031608 FBtr0077441 3 1 1 60 2L 4460023 4460041 GACTACGAGATATTCGCCA 58 4460065 4460083 TGAGAAACTCGTTTGTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tutl FBgn0010473 FBtr0089269,FBtr0089270,FBtr0089268,FBtr0089271 1 4 4 164 2L 4295612 4299076 AATATTCCAGAAGACGCCG 59 4303347 4303368 CTCATACCAGATATAGATGGGC 59 NA Drosophila melanogaster 50 CG15425 FBgn0031591 FBtr0077471 1 1 1 61 2L 4257886 4257904 GAATACAGGACTTCCGGTG 59 4257929 4257947 GATTCACGTACTGCATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2955 FBgn0031585 FBtr0077468 2 1 1 60 2L 4150407 4150428 CATTCATAGAACTGAAACGGAC 59 4150446 4150467 TGCTATAAGAGAAACTCGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bowl FBgn0004893 FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493 3 4 4 122 2L 3780466 3780484 CACCAAGTCGTACAATCTG 58 3780569 3781912 TGAATATACCTGTGATCCCT 57 NA Drosophila melanogaster 50 lilli FBgn0041111 FBtr0077634,FBtr0077633,FBtr0077632 3 3 3 292 2L 2947157 2947175 GACATTCCGTCGAGTAGTG 59 2947431 2947622 TTGTTGACATCCTTCTCCG 59 NA DesignRelaxed Drosophila melanogaster 50 NTPase FBgn0024947 FBtr0077680,FBtr0077683,FBtr0077681 1 3 4 143 2L 2882504 2882702 CTTTGTCTTTGGCTTCGTC 59 2882379 2882397 CGATTGAACTTGTAGGCCA 59 NA Nonspecific Drosophila melanogaster 50 oho23B FBgn0015521 FBtr0077621,FBtr0077622,FBtr0077623 3 3 4 164 2L 2856560 2856643 CATTACCAAGAACTTCTAAGCG 59 2856766 2856786 AGCTAATCCTGGTTCTAACTG 59 NA InUTR Drosophila melanogaster 50 CG16995 FBgn0031412 FBtr0077758 3 1 1 97 2L 2308450 2308468 CGTCGTTTCAAGGTAACAC 59 2308529 2308596 ATAGATGGTACTGCCACTC 58 NA Drosophila melanogaster 50 cpb FBgn0011570 FBtr0077881 2 1 1 60 2L 1705705 1705723 CTTCGATCAGTACAGGGAG 58 1705747 1705765 ATCCCATAGGTAGACGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18131 FBgn0031343 FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934 1 4 6 62 2L 1500147 1500167 GCCAGCTTATATCTAATGACC 58 1500037 1500123 ATATGTTGACTTGAGTGGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG31659 FBgn0051659 FBtr0077943 2 1 1 80 2L 1359514 1359533 AGTCGACGGATTTCATAGAG 58 1359404 1359471 TTACAGTACCAGTTTGGGT 58 NA Drosophila melanogaster 50 CG33922 FBgn0053922 FBtr0091926 3 1 1 130 2L 1343758 1343777 ATAACGTAACCGTAGATGGC 59 1343587 1343666 AATGATATCGTGGTCGTAGG 59 NA Drosophila melanogaster 50 Oseg3 FBgn0031262 FBtr0078078,FBtr0078077 1 2 2 86 2L 554391 554409 AATTCTGGAGATCCAGCAG 59 554262 554341 AGTTCGGGTTTAATCAGCA 59 NA Drosophila melanogaster 50 CG11604 FBgn0031242 FBtr0078139 1 1 1 60 2L 272446 272464 TCCGGTAGTTATCATGGTC 58 272404 272425 GGATGGCAATATTTAGATTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpp30 FBgn0022246 FBtr0078143 2 1 1 112 2L 252059 252077 CATAAGATCGAGCATCTGC 58 251911 251983 TTATGGGAGACACTCATCG 58 NA Drosophila melanogaster 50 r-cup FBgn0031142 FBtr0077269 2 1 2 127 X 20895470 20895488 GATCGATCCACCTACTCCT 59 20895092 20895110 AAGTAGCTCCTTTCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1304 FBgn0031141 FBtr0077271 2 1 1 60 X 20836232 20836250 ATTCTGTCCAGGAACTACG 58 20836190 20836208 CATTTGAGTCCTGATTGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bap FBgn0010380 FBtr0074789 2 1 1 83 X 19626776 19626794 AATGGTTTGGATCATTGGC 58 19626841 19626924 TCCTGGAATCCTTCAAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG32551 FBgn0052551 FBtr0074564 2 1 1 106 X 18333120 18333139 AAATATAACCCAAGCCTGGA 58 18333208 18333849 TTTCATTGGGTGAATCGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7772 FBgn0030883 FBtr0074540 3 1 1 108 X 17800362 17800695 TCATCAATCGGATCACCTG 59 17800272 17800290 ATGATAAGCGGTATGCTGG 59 NA Nonspecific Drosophila melanogaster 50 CG32495 FBgn0052495 FBtr0089800,FBtr0089799,FBtr0089801 3 3 3 82 X 17798672 17798835 ATAAGCTGCACAATATGCC 58 17798881 17798899 CTTTGCATAGATGTCCCAC 58 NA Nonspecific Drosophila melanogaster 50 CG6506 FBgn0030874 FBtr0074465 3 1 1 62 X 17744852 17744870 CCCTCATTGAAACGTACTC 57 17744956 17744974 TTAGGCACGGATTCAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15816 FBgn0030866 FBtr0074459 2 1 1 61 X 17633498 17633516 AAAGTCCTCGAGCAATACG 59 17633540 17633559 TTGTTTCGGAATTCGTTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34327 FBgn0085356 FBtr0112529 1 1 1 209 X 17117599 17117617 GATCTGGAGGATGGAAGAG 58 17117408 17117426 ACAGTGCACTGGATAATCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4949 FBgn0030813 FBtr0074381 2 1 2 63 X 16973029 16973107 TAATTTGGCAAAGCTATGCG 59 16973133 16973151 ACTGGTGATCAGTAAGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15865 FBgn0015336 FBtr0074375 2 1 1 60 X 16557726 16557873 CCATCTTCGAAGAGTCCAC 59 16557684 16557703 TCTCAAAGACCACATAGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8924 FBgn0030710 FBtr0074131,FBtr0074130 3 2 2 68 X 15837294 15837312 GAATGTCCACCTATCCCTG 59 15837402 15837421 GAATCCAAGTATTGCTGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8952 FBgn0030688 FBtr0074193 3 1 1 68 X 15660250 15660343 AGATAATCGCATAGTGTCCG 59 15660201 15660219 CTCTTCAGTATGACCTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6340 FBgn0030648 FBtr0074040 1 1 4 68 X 15377389 15377407 AGAAGACAAAGCCGATGTC 59 15377439 15377457 TTACCTCATCAATGCGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9164 FBgn0030634 FBtr0074013,FBtr0074012,FBtr0074014 3 3 3 165 X 15276203 15276279 ACAAGTCCGACTTCTACAC 58 15276056 15276074 TAGTCCTTGTAGATGCTGC 58 NA DesignNoJunction Drosophila melanogaster 50 Lsd-2 FBgn0030608 FBtr0110969 2 1 3 261 X 14968211 14968229 CCAGGAGATCTACAACCAG 58 14966999 14967989 AACATTATCTTCCTCGACATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12177 FBgn0030510 FBtr0073846 3 1 1 140 X 13572778 13572898 ATATACACATTAACTGGCGC 58 13572657 13572675 GATTCCACGTATCGATCCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG11164 FBgn0030507 FBtr0073809 3 1 1 89 X 13562478 13562568 AAAGAGCAATATCGCTGGA 59 13562621 13562639 ATTTAAGGTTCCCTGGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4400 FBgn0030434 FBtr0073693 3 1 1 125 X 12803066 12803084 TGGACAAGAAGTATCGCAC 59 12802712 12802977 GTTTCTCGCTCTCAAAGTG 58 NA Drosophila melanogaster 50 CG34321 FBgn0085350 FBtr0112523 2 1 1 200 X 11625579 11625597 TCGAATCGAACGTGAAGAG 59 11625397 11625415 CAAATCGCTCGGTATACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11699 FBgn0030311 FBtr0073510 2 1 1 179 X 11464973 11464991 GAAGACGGATAGCAAGGTC 59 11465134 11465212 AACTCCTGGAAATCCTTGG 59 NA Drosophila melanogaster 50 Or10a FBgn0030298 FBtr0073548 3 1 1 92 X 11310698 11310716 TTATTTCGAGTTCTGTGCC 57 11310565 11310642 TCCAAGTGATCAGTGTAGG 58 NA Drosophila melanogaster 50 ras FBgn0003204 FBtr0071496,FBtr0071494,FBtr0071495 3 3 3 92 X 10641987 10642006 ATCTACCCTATTTGGAGTGC 58 10642057 10642150 GGCCATTATAGATCATATCCCTC 59 NA Drosophila melanogaster 50 CG12075 FBgn0030065 FBtr0071253,FBtr0071254 3 2 2 105 X 8761810 8761828 CTATTTGGTGGACAGGTCC 59 8762036 8762054 TGGAATCAGATGCTTCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10959 FBgn0030010 FBtr0071157 1 1 1 60 X 8043587 8043606 CAACCAAAGGACTACAACTG 58 8043629 8043647 TTAGGTATTTCTGCGTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14435 FBgn0029911 FBtr0071042 3 1 1 83 X 6735741 6735759 TAAGTTTGTGTTGCCAGAC 58 6735598 6735696 AGTACGTCCTCGTTATATGAG 58 NA Drosophila melanogaster 50 CG15894 FBgn0029864 FBtr0112955,FBtr0070901 1 2 2 214 X 6215017 6215856 AATGTATTCGAGCAGGTCG 59 6217753 6217771 TAACTCTGGTGGTCATCGA 59 NA DesignNoJunction Drosophila melanogaster 50 Mlc-c FBgn0004687 FBtr0070783 3 1 1 132 X 5514314 5516297 GATCAGTTGGCTGAATTCC 58 5514200 5514218 ACTTCTTGACATCCGACTC 59 NA Drosophila melanogaster 50 CG3239 FBgn0029769 FBtr0070793,FBtr0070792 2 2 2 60 X 5389628 5389647 CCTTTCGTCTTCAAGTACTC 57 5389587 5389605 TGCTTCCAAATGTCATACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3309 FBgn0029756 FBtr0070798 2 1 1 159 X 5222335 5222354 TACTTCACCATTCACGACAG 59 5222136 5222213 TGTTCTTCTGGTTGTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdk7 FBgn0015617 FBtr0070756 1 1 1 109 X 5202772 5202862 GTTTGCCACAGTTTACAAGG 59 5202682 5202700 CTGTCCTGTTGATACCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15472 FBgn0029724 FBtr0070736 1 1 1 60 X 4663828 4663846 CAGACCATATGTCTGGGAG 58 4663786 4663806 GTAATTGGCTATGCTTACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3556 FBgn0029708 FBtr0070674 2 1 1 131 X 4427044 4427062 TTCTTTAAGGCCATGACCC 59 4427225 4427306 CCAGTAGTGATACCCTCGA 59 NA Drosophila melanogaster 50 CG32779 FBgn0052779 FBtr0070601 3 1 1 157 X 3697166 3697184 CAGAATGTCAGTCCTGGTC 59 3697305 3697323 CACGAGAGGTTCTTATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3939 FBgn0040396 FBtr0070508 2 1 1 65 X 3069646 3069664 GAGAAAGACAAGGACGGAC 59 3069967 3069986 ACTCATGATAGTTTCCTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17776 FBgn0040899 FBtr0070390 2 1 1 122 X 2079003 2079021 GAAGAAGCCGATTAACACC 58 2079107 2079125 GTGCAGTAGTGGTAGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32803 FBgn0052803 FBtr0100306,FBtr0070356 1 2 2 60 X 1794976 1794998 GACTAGTCATAATGGTACCTCTC 59 1794938 1794956 GCAAATCCGAAATAGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3056 FBgn0024987 FBtr0070215,FBtr0070214 3 2 2 106 X 1265711 1265729 CAATTACTTGCCACAGGAC 58 1265798 1265957 TATATCCGGTCTTGAAGTCG 58 NA Drosophila melanogaster 50 CG11378 FBgn0040364 FBtr0070197 1 1 1 88 X 1065650 1065668 TCTAAGGTGGATCCTAGCC 59 1065720 1065855 ATATCCTCGATGCTAACGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40685 FBgn0085767 FBtr0114217 1 1 1 61 U 9461350 9461368 GTTGGCTAATGCAACAACC 59 9461307 9461326 AACATTAACCTGATGGATGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR41535 FBgn0085795 FBtr0114249 1 1 1 60 U 8853700 8853718 CAGAACGAGCACATAAACC 58 8853741 8853760 TGAAGATTGAGATAGTCGGG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40375 FBgn0085733 FBtr0114182 1 1 1 80 U 1361949 1361970 GAAAGTTAAGGAAACAGAGTGG 59 1356337 1361911 TACCTATAAGAAACGTATGCCG 59 NA Drosophila melanogaster 50 CG11340 FBgn0039840 FBtr0085766 2 1 1 281 3R 27130061 27130731 ATCTTCAACAGAATCTGGC 57 27129798 27129816 AGTCCAGGTTCTTCATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15531 FBgn0039755 FBtr0113309,FBtr0085572 3 2 2 112 3R 26021246 26021264 CGGTCTTCTGAAGTACTCG 59 26021090 26021171 ACAGCAGGACATAGAATCTC 58 NA Drosophila melanogaster 50 CG34296 FBgn0085325 FBtr0112492 2 1 1 79 3R 25548494 25548512 GTGGATCAACCGTTAACAC 58 25548554 25548573 ATAGTCGTAATCCGAACTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ppk19 FBgn0039679 FBtr0085451 1 1 1 110 3R 25499304 25499323 CTTCGTTGACTTATAACCGC 59 25499396 25499463 GAACTCCATCAATGGGAGG 59 NA Drosophila melanogaster 50 CG14519 FBgn0039619 FBtr0085340 1 1 1 125 3R 24817029 24817047 TTTAATTGGTACAGTGCGC 58 24817136 24817154 TGTTGCAGATATAGCTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14523 FBgn0039612 FBtr0085349 2 1 1 60 3R 24704850 24704868 AATAGATGAGCTGGTGACG 59 24704808 24704829 CTCATTGAAGACATAGTTAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12426 FBgn0039552 FBtr0085227 1 1 1 65 3R 23697806 23697824 TGGTTCTCGTCATATTCCG 59 23697646 23697777 TAAACGTCATCGCAATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spz FBgn0003495 FBtr0085144,FBtr0085137,FBtr0085138,FBtr0085145,FBtr0085140,FBtr0085143,FBtr0085139 3 7 12 135 3R 22892191 22892337 ATCGGATACCTTTGTCTTCC 59 22892075 22892094 GAAGTTTCTAAGGTGTTGGC 59 NA Drosophila melanogaster 50 NepYr FBgn0004842 FBtr0085100 1 1 1 98 3R 22855542 22855560 GTTTATTGCACTTGCCACC 59 22855622 22856386 CGGCAAATGTATTTCTCGC 59 NA Nonspecific Drosophila melanogaster 50 CG5500 FBgn0039461 FBtr0085064 1 1 1 137 3R 22705551 22705818 ACATAGAGATACCTCCCGAG 59 22705918 22705936 TCTTGCTCAGCACAATCTC 59 NA Drosophila melanogaster 50 CG12290 FBgn0039419 FBtr0084990 3 1 1 60 3R 22058037 22058056 TCTGAGTTACATGAGCTCCT 59 22058077 22058097 GTATTTGAATAGCGAACTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8957 FBgn0039393 FBtr0084946 3 1 1 279 3R 21743338 21743414 AGACATGACCTTTGATCCA 58 21743716 21743735 TATGACTTGATCCTTGGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11913 FBgn0039331 FBtr0084833 3 1 1 170 3R 21184208 21184339 CATCAAACAAAGAAGGCCC 59 21184473 21184491 GAAATGTACGATCAACGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5807 FBgn0027539 FBtr0084739 1 1 1 114 3R 20633194 20634328 CTTATGCTGATTTGCACCC 59 20633098 20633116 TGTAGAAGGCGCTAAACTC 59 NA Drosophila melanogaster 50 CG6454 FBgn0039187 FBtr0084608,FBtr0084609 3 2 2 81 3R 20175505 20175618 TCAACAAGTTCCCTCAGTG 59 20175662 20175681 TCATTCACCACCAATTCCTC 59 NA Drosophila melanogaster 50 CG13597 FBgn0039124 FBtr0084525 2 1 1 60 3R 19718390 19718408 GAGTAGTTCCTCATGGCTC 59 19718348 19718367 AGGATTAAATGACGACACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pli FBgn0025574 FBtr0112908,FBtr0084527,FBtr0112907 3 3 3 94 3R 19691346 19691364 GAATCTCCCATACTGGCTG 59 19688922 19691288 AAGTAACCATTGTAGCCGA 58 NA Drosophila melanogaster 50 CG17381 FBgn0039079 FBtr0084415 3 1 1 60 3R 19311003 19311021 TGGTCTGCATGATTTCTGG 59 19311045 19311063 GATCTTACCCGCCTTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4704 FBgn0039029 FBtr0084314 1 1 1 74 3R 18670520 18670538 TCCTGAAGTTTCTACACGC 59 18670408 18670482 AACTGGACTCCTTCAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dcr-1 FBgn0039016 FBtr0084324 2 1 1 80 3R 18560351 18560369 TTAACGATGTGATTGACCG 57 18560226 18560309 CGGACAATAAGTAGTACTCCT 58 NA Drosophila melanogaster 50 CG7044 FBgn0038854 FBtr0084035 2 1 1 109 3R 16925092 16925112 ACTCGGAAGTCTATGTAAGAG 58 16924936 16925023 AAGATGGTCTACAAGATCGAG 59 NA Drosophila melanogaster 50 CG31199 FBgn0051199 FBtr0083930 1 1 1 67 3R 16569355 16569373 AATATGCAAAGCACCTTCG 58 16569249 16569324 CCCTTGCCATACACTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14280 FBgn0038695 FBtr0083738 3 1 1 120 3R 15085286 15085362 AAAGATGAAGCTGAGAACG 57 15085446 15085464 CATCGTTAAACCGTTCTCC 58 NA Drosophila melanogaster 50 CG5558 FBgn0038684 FBtr0083748 3 1 2 190 3R 14986898 14987091 CCAAAGAAAGAACACTTGGC 59 14986727 14986745 CAGTAGTTGGACCACTTGG 59 NA Nonspecific Drosophila melanogaster 50 Prp18 FBgn0027784 FBtr0083717 2 1 1 60 3R 14856413 14856431 AGAGCATACAGACAATGGC 59 14856371 14856390 ATCACATCCATGTCGTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fsh FBgn0016650 FBtr0083510,FBtr0083509 3 2 2 86 3R 13556338 13556426 AGACATAACTGAACTCGATCTC 59 13556473 13556491 TGAATGTACAACGCTTCGA 59 NA Drosophila melanogaster 50 l(3)07882 FBgn0010926 FBtr0083504 3 1 1 62 3R 13363085 13363103 CTTAGGCTCAAACAGACCC 59 13362980 13363000 GTAAATGCGCTTAACCTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31279 FBgn0051279 FBtr0083284 1 1 1 139 3R 12257306 12257325 GTACTACGACATCTTCAGCA 59 12257427 12257930 CATCTGACTTCTCATGCGA 59 NA Drosophila melanogaster 50 mtSSB FBgn0010438 FBtr0083277,FBtr0100152 1 2 2 101 3R 12030246 12030624 CAACTACAAATATGAGAACGGC 59 12030166 12030184 TTCAAGTATTCCAGCACGG 59 NA Drosophila melanogaster 50 CG6966 FBgn0038286 FBtr0113236 3 1 1 97 3R 10908099 10908118 TTTGGATCCTGATGAGATGC 59 10907953 10908041 CCCTAAATCGAATGTAGTAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG14857 FBgn0038262 FBtr0082993 3 1 1 117 3R 10628075 10628093 ACTTTCTTACCACCTACGC 59 10628174 10628491 GCCAAGTATTCCAGAACCA 59 NA Drosophila melanogaster 50 su(Hw) FBgn0003567 FBtr0082945,FBtr0082946 2 2 2 119 3R 10131798 10131884 CAGAGAAACAACTTGAGCG 59 10131697 10131715 CGTCCATATGCTCCTTGAG 59 NA Drosophila melanogaster 50 Sp212 FBgn0053329 FBtr0082899 2 1 1 106 3R 10049440 10049458 TTTCGAATAGCCGTCAGAC 59 10048879 10049370 GGAACGGTTACAAATTCGC 59 NA Drosophila melanogaster 50 GstD10 FBgn0042206 FBtr0082609 2 1 1 60 3R 8190922 8190940 TCCGAGTACTATTATCCGC 58 8190880 8190900 TCTTGTAGTTCTCCTCATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12213 FBgn0037968 FBtr0113223,FBtr0082510 3 2 3 146 3R 7791201 7791277 AGATCAAGATGAGGACGAC 58 7791073 7791093 GCACGGCTTTAATATAAAGGG 59 NA InUTR Drosophila melanogaster 50 mus309 FBgn0002906 FBtr0082434 3 1 1 103 3R 7564857 7564939 GGCTTCCCTAGATATCTGTG 59 7564773 7564791 ATTTGACCATAGGTGGCTG 59 NA Drosophila melanogaster 50 CG8478 FBgn0037746 FBtr0082133,FBtr0082132 3 2 2 97 3R 5590340 5590415 TAACTGAAGTATCCAACGAAGG 59 5590472 5590491 AGAGACTTCGTTCACTACCT 59 NA Drosophila melanogaster 50 CG8478 FBgn0037746 FBtr0082133,FBtr0082132 1 2 2 94 3R 5590340 5590415 TAACTGAAGTATCCAACGAAGG 59 5590470 5590488 GACTTCGTTCACTACCTCG 59 NA Drosophila melanogaster 50 Prosbeta3 FBgn0026380 FBtr0082010 2 1 1 109 3R 4831658 4831676 AAGAAGGTGTTCCACATCG 59 4831567 4831585 GTCTCGTACAGATTCTTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11760 FBgn0037615 FBtr0081906,FBtr0081907 1 2 2 158 3R 4545581 4545599 CTATCTACTGCTGCTCCAG 58 4545719 4545739 GGATGTTTCTGTCTATATGGC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7352 FBgn0037581 FBtr0081842 2 1 1 129 3R 4174218 4174236 AGTGACTTAGTCCAGAAGC 58 4174328 4174401 TTTCGATTTCTAGGACTTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31146 FBgn0051146 FBtr0081541 1 1 1 81 3R 3501116 3501134 ATTGCGCTTCTATATGCAG 58 3501177 3512168 CATGTCCTGGTATTTCTTCAG 58 NA Drosophila melanogaster 50 dj FBgn0019828 FBtr0089741 2 1 2 60 3R 2885193 2885292 TCCTTGAGAACTTTAAGGAAGG 59 2885313 2885331 GCGGATCGTGAATAGAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31562 FBgn0051562 FBtr0078589 1 1 1 101 3R 2010549 2010567 CATGATCCTCGAGGATCTG 59 2010766 2010784 TAGCGACTCTTCAGATTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG2919 FBgn0037348 FBtr0078743 2 1 1 78 3R 1430093 1430176 CAGAAATTACCAAGGCGGA 59 1430033 1430052 AATTCTTTCAGTTCCTTGGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31525 FBgn0051525 FBtr0078924 3 1 1 60 3R 253773 253791 CATAACAAGCATGCAACAC 57 253815 253833 TACCCTGATGATGTGTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9791 FBgn0037232 FBtr0078904 3 1 2 114 3R 138248 138329 TACTCCATATGAGGTGGCT 59 138407 138425 ACAAACATGCACTTCATCC 58 NA Drosophila melanogaster 50 CG10508 FBgn0037060 FBtr0078302,FBtr0078303,FBtr0078301 2 3 4 86 3L 21208530 21208549 TATTATCGAACGAATGGCCA 59 21208598 21208690 GTGACATAATCGGCTAGCA 59 NA Drosophila melanogaster 50 CG4825 FBgn0037010 FBtr0078214 3 1 1 102 3L 20516651 20516737 TCGGTTAGGCAATATTACGT 58 20516568 20516586 ACAGAATAGCTTCGGAGAC 58 NA Drosophila melanogaster 50 cyc FBgn0023094 FBtr0074924 1 1 1 193 3L 19807834 19807922 CTTATCGATGCGAAGACCA 59 19807659 19807677 GTAGTCAGTCTGGACTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18136 FBgn0036839 FBtr0075040 3 1 1 105 3L 18994623 18994641 GTGCTGATCTCCATGAGAC 59 18994480 18994554 TCTCCAGAAAGTTCCTCCA 59 NA Drosophila melanogaster 50 Rad9 FBgn0025807 FBtr0075080,FBtr0112917 1 2 2 88 3L 18864945 18865071 TGCCGAATATAATCCGTGG 59 18864875 18864893 TGCCTCCAAAGTAAGTTCC 59 NA Drosophila melanogaster 50 l(3)neo26 FBgn0036815 FBtr0075057,FBtr0075056 2 2 2 66 3L 18814990 18815008 TTCAGCCGATTCCAAAGAG 59 18815035 18815056 CCCATCAAGTAAATATCCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6311 FBgn0036735 FBtr0075208 1 1 1 60 3L 17520616 17520637 CCAGAGATTTCATTGTTCAAGG 59 17520515 17520595 GTAAGGCGTCTACTGAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6322 FBgn0036733 FBtr0075209 2 1 1 60 3L 17506434 17506452 CTAAACGAACCCATTTGCT 58 17506392 17506410 CCTTAAGACGTCTTCTTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eig71Ec FBgn0004590 FBtr0075586 2 1 1 102 3L 15644934 15645030 CTTGTCGATTGACACTCGA 59 15644850 15644868 GTCCTCCTTGAAGTTGGAG 59 NA Drosophila melanogaster 50 obst-H FBgn0053983 FBtr0100028 1 1 1 206 3L 15521705 15521788 AGATAAAGTTCAGTGTGCCT 58 15521518 15521536 TTTCCATAGCATTTCGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gnu FBgn0001120 FBtr0075697 1 1 1 124 3L 14796262 14796338 TATAGAGATCCCGCATCCC 59 14796156 14796174 CCAAAGAGTCCGTATCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11255 FBgn0036337 FBtr0075896,FBtr0075895 2 2 2 165 3L 13013917 13014182 TACATTTCGGGCTTCTTCC 59 13013770 13013788 AGATGATGTCCACGTAAGG 58 NA Drosophila melanogaster 50 Klp68D FBgn0004381 FBtr0076030 1 1 1 175 3L 11789711 11789834 CATAGTTCAAGATCCCACG 57 11789973 11789991 AGTGCCAGATTAATCTTGC 57 NA Drosophila melanogaster 50 CG6767 FBgn0036030 FBtr0076416,FBtr0076415 2 2 2 145 3L 9677734 9677753 TATGCTATTCTGACGCATGG 59 9677545 9677626 GAGACATCAATGCACTGGA 59 NA Drosophila melanogaster 50 CG12525 FBgn0036010 FBtr0076422 3 1 1 97 3L 9536289 9536436 CCCATTGTACAAGAGTGGT 59 9536210 9536229 ACGATTAGGAAATTTCCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aay FBgn0023129 FBtr0076457 1 1 1 60 3L 9417180 9417198 CTATGCCAACAAGATGCTG 58 9417219 9417240 CTGGTTGATATCAAAGCTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7185 FBgn0035872 FBtr0076710 1 1 1 74 3L 8305157 8305385 AGAGCTGTTTCTGATGCAG 59 8305101 8305119 GATCAGTGAAATGGCTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13678 FBgn0035859 FBtr0076700 2 1 1 97 3L 8215942 8215961 ATCCATGGATTGTAAACCCT 58 8216020 8216039 TTAATGCATCACAAGTAGGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Nmt FBgn0020392 FBtr0076728 3 1 1 60 3L 8169858 8169876 ATTATCGATTGCTTCGTGG 57 8169816 8169835 AGTAGCTAGTCAGATCAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7548 FBgn0035792 FBtr0076830 2 1 1 108 3L 7499254 7499272 CTCCAGCTTGCTTCTACTC 59 7499164 7499182 TACATTCTGTTGGGTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32407 FBgn0052407 FBtr0077032 2 1 1 97 3L 5916305 5916323 ATCAAGAGCATCATCGGAG 59 5916384 5916465 TTAAAGGCAGCATCTAGCA 58 NA Drosophila melanogaster 50 CG17150 FBgn0035581 FBtr0073351,FBtr0073349 1 2 3 80 3L 4888911 4889142 TATTTCACGACGGAGTACC 58 4889186 4889204 TTCACTACTCGGAATGTGC 59 NA Drosophila melanogaster 50 axo FBgn0026729 FBtr0073368 3 1 1 125 3L 4673380 4674963 CAATTAAGACTTTGCCGTGAG 59 4673275 4673294 AATCACGTAGAGTGCATAGG 59 NA Drosophila melanogaster 50 CG32240 FBgn0052240 FBtr0073336 2 1 1 237 3L 4381319 4381395 CATTTGTGACGGTTCTCAG 58 4381037 4381055 TTCTTCATGTACTTGGCCA 58 NA DesignNoJunction Drosophila melanogaster 50 Gr64b FBgn0045478 FBtr0073195 1 1 1 82 3L 4029936 4030007 CTTGGTCCATAGAGGTTCAG 59 4030052 4030070 GAGGTAGAAGAATCCGCTG 59 NA Drosophila melanogaster 50 CG12766 FBgn0035476 FBtr0073172 2 1 1 80 3L 3938886 3938967 CGATATGTGATTGAGCTGG 58 3938824 3938843 GAAGACATTGAAGTTCTCCT 57 NA Drosophila melanogaster 50 CG14973 FBgn0035451 FBtr0073130 2 1 1 223 3L 3506994 3507012 TGCTAAGCTGGAAGATGTC 59 3507199 3507307 GATTCTCCGCCTTAATCGT 59 NA DesignRelaxed Drosophila melanogaster 50 mu2 FBgn0002872 FBtr0072857,FBtr0072856 1 2 2 80 3L 1945489 1945507 TAAGTCCCAATGAGGAGTC 57 1945372 1945448 TCTGACAGATCTTCTGATAGTG 58 NA Drosophila melanogaster 50 CG13930 FBgn0035256 FBtr0072803 2 1 1 181 3L 1671167 1671186 CCAGTCGGACATATACTACG 59 1670945 1671023 AGATACGAATGCACCAGTC 59 NA Drosophila melanogaster 50 RpL23A FBgn0026372 FBtr0072805 3 1 1 137 3L 1667572 1667590 TCATCAAGTACCCACTGAC 58 1667453 1667471 CCACCTTGATGTCGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 klar FBgn0001316 FBtr0072565,FBtr0112807,FBtr0110818 2 3 4 71 3L 436258 436277 CATCTGAAGAACGAAGTGAG 58 436144 436224 CAGTTGCGTGTTGATTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG16971 FBgn0035114 FBtr0072498,FBtr0072497,FBtr0072496 2 3 3 229 3L 224178 224985 GTGAAGTCGCAAACATGTG 59 225763 225781 CTTGTTTGTGTTCCGTTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 NitFhit FBgn0024945 FBtr0072483 2 1 1 60 3L 204658 204677 GAGCAGGAGCTTGATATAGG 59 204699 204718 GATACAGAGATTGAAGCACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33408 FBgn0053408 FBtr0086400 1 1 1 62 2R 15633428 15633446 AATACATCGGTTCTCGTCC 59 15633384 15633402 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3770 FBgn0035085 FBtr0072393 3 1 1 103 2R 20833761 20833780 TCTATTTCTGCATCCGATGG 59 20833843 20833914 ATGAAACTCCTATGCTACAGTC 59 NA Drosophila melanogaster 50 CG34214 FBgn0085243 FBtr0112407 2 1 1 138 2R 20553345 20553422 ATAAATCCTCTGTACCCGC 58 20553225 20553243 AGCGTATGTTAGCATCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4622 FBgn0035021 FBtr0100276 3 1 2 179 2R 20422605 20422679 AATACATCGATTCAGGACAC 57 20422445 20422465 GGCTGATATCATTAGTTCCTG 57 NA Drosophila melanogaster 50 CG4286 FBgn0034601 FBtr0071627 1 1 1 78 2R 17065632 17065712 GTTCTCGAAGAGCTAACCA 59 17065572 17065590 TCTCTTCATCGAAGTACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mago FBgn0002736 FBtr0071569 3 1 1 261 2R 17016216 17016234 TTACCTACGCTACTACGTC 57 17016459 17016535 GATGACGATCTCCAGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18065 FBgn0034519 FBtr0100677 2 1 1 73 2R 16439217 16439294 GCAATGAGATTATGCACCA 58 16439162 16439180 ATTCTGGTGGCTGTAATCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CkIIbeta2 FBgn0026136 FBtr0086278 1 1 1 60 2R 16177428 16177447 ATGCTCGCTTTATCCTAACC 59 16177470 16177488 CCCTTGTTGTACTTGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Scs-fp FBgn0017539 FBtr0086552,FBtr0086553,FBtr0086554 3 3 3 136 2R 15280457 15280475 CTGAAGATGCAGAAGACCA 59 15280283 15280358 CAGATAAGCGACCTATCGAC 59 NA Drosophila melanogaster 50 FK506-bp2 FBgn0013954 FBtr0086515 2 1 1 105 2R 15178224 15178242 CTGCTCAAGGTCGAATAGG 59 15178311 15178329 TATGATGTTCTTCGGCTCG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7137 FBgn0034422 FBtr0086505 1 1 1 60 2R 15115145 15115163 GACTACGAAGATGTGGAGG 59 15115187 15115205 CTATTCTTCCGGACTTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k07433 FBgn0022085 FBtr0086949,FBtr0086948,FBtr0086950 2 3 3 82 2R 13419274 13419292 GTGATAGAATCGCTGATGG 57 13419150 13419229 CCAGATATTCTTCGTATGGC 57 NA Drosophila melanogaster 50 Cbp53E FBgn0004580 FBtr0087056 3 1 1 85 2R 12872275 12872350 GACATTAGTCCAGAGGCAG 59 12872399 12872417 CCATCCTGATTGTCATCGT 59 NA Drosophila melanogaster 50 Vkor FBgn0053544 FBtr0091510 3 1 1 63 2R 12666129 12666147 CAAGTAAATGCTCCCAACG 59 12666173 12666247 AAGAGCTCAAGAAGTACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8317 FBgn0034140 FBtr0087122 1 1 1 64 2R 12462676 12462694 GTTCAACTACAGTCCCTCG 59 12462630 12462648 AATCAAAGTACGGCTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15711 FBgn0034122 FBtr0087167 2 1 1 60 2R 12251214 12251232 AGCTCTCATTCAAAGGTCG 59 12251172 12251193 GTTCCGGATATAGCAAATACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8435 FBgn0034084 FBtr0087249 2 1 1 168 2R 12057719 12057737 AGTGGACTACAACACTCTG 58 12057509 12057530 CTTGATCTCCTCAATGATTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG30084 FBgn0083919 FBtr0087313 1 1 6 146 2R 11651546 11651564 GTTTCCGTTAAAGCCTTGG 59 11651322 11651436 GATAAAGGGTCCTGAGGTG 59 NA Drosophila melanogaster 50 Obp51a FBgn0043530 FBtr0087420 3 1 1 237 2R 10912208 10912294 ATCCGCTTTATTCGAATCTG 58 10911990 10912008 CGATAGTTTGAGGCATGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LamC FBgn0010397 FBtr0087512 1 1 1 201 2R 10459774 10459793 CTACAGAATCTGGAGGACAC 59 10459522 10459540 TTTCGAGATCCAACGACAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8550 FBgn0033742 FBtr0087935 3 1 1 60 2R 8359772 8359791 AAGAACTGGTCAATCAGTGG 59 8359814 8359832 CCATTCAAGCCGTATACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8831 FBgn0033737 FBtr0087952 2 1 1 94 2R 8316489 8316507 CTGACAGAACTCAAGAAGC 58 8316346 8316433 ATCCTTAGTATGCGATGACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8490 FBgn0033715 FBtr0087899 1 1 1 66 2R 8223112 8223130 TAGCATATCCATGCACCTC 58 8223160 8223178 TTACTGGATCCATCAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17739 FBgn0033710 FBtr0087893 1 1 1 80 2R 8194902 8194921 TGGATGATAACTATGTGCTG 57 8194962 8195075 CACTGAGGCTAACATTATACC 57 NA Drosophila melanogaster 50 CG8407 FBgn0033687 FBtr0087985 2 1 1 60 2R 8041215 8041411 ATACTCATCGAACTACGAGC 59 8041432 8041452 GAACTTCTTGTCCATGTTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG8979 FBgn0033669 FBtr0088053,FBtr0088051,FBtr0088052 3 3 3 133 2R 7855440 7855459 TTCTAGACCCTGTATTCACG 58 7855269 7855344 ACTTGGAATGAAGGATCCG 59 NA Drosophila melanogaster 50 CG13203 FBgn0033628 FBtr0088130 1 1 2 163 2R 7263313 7263331 AGGATAACAGTTCAGTGGC 59 7263780 7263798 TATCATGTGCGAGTACTCC 58 NA DesignNoJunction Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 2 12 12 89 2R 6499951 6500254 GGCATATGGACATGTATAACTC 58 6500304 6500322 TATAGTGCGGTTCCTTCTG 58 NA Drosophila melanogaster 50 CG2269 FBgn0033484 FBtr0088407,FBtr0088408,FBtr0088409 1 3 3 114 2R 5982474 5982563 CTATCTATGTGGTGCCTCAC 59 5982640 5982658 GATCATCAGGATGGAACGG 59 NA Drosophila melanogaster 50 CG1407 FBgn0033474 FBtr0088436,FBtr0088435 1 2 2 91 2R 5919620 5919727 CCAGATCAATGGAGGATACC 59 5919548 5919567 GCAAAGTTGTTAAGAATGCG 58 NA Drosophila melanogaster 50 CG30356 FBgn0050356 FBtr0088717 2 1 1 60 2R 4616876 4616894 GACATTCGATGCTAAAGCA 58 4616834 4616852 AGAAACTGAAAGAACGGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PGRP-SC2 FBgn0043575 FBtr0088709 2 1 1 101 2R 4604832 4604850 CTGGGCAACTACAATACCA 59 4604915 4604933 GTATCCGGAAACGATCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14755 FBgn0033282 FBtr0088738 2 1 1 80 2R 4235818 4235836 CTGAATCTGTGCATTACCC 58 4235880 4235898 TTAGCCATGAGCTGATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8708 FBgn0033271 FBtr0088809,FBtr0088808 1 2 2 60 2R 4048238 4048256 GTTGAAGCATGATCATCGC 59 4048196 4048214 TACCTCCTTCTTCAACTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30381 FBgn0050381 FBtr0113374 3 1 2 107 2R 3818098 3818176 CGTTTGAAGAGGTTAAATGC 57 3818010 3818028 CGTAATCTTTGGTGTACCG 58 NA Drosophila melanogaster 50 CG10465 FBgn0033017 FBtr0086094 2 1 1 65 2R 1228111 1228129 ACAATGACACAATGCTGAG 58 1228015 1228082 ATCCTTCCGAATCAGTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17665 FBgn0039997 FBtr0111269,FBtr0111268 1 2 2 83 2R 124473 124492 AGTTTGAGACATACGAACAG 57 124352 124429 GCAATATGTCCTGTATACACC 58 NA Drosophila melanogaster 50 CG40131 FBgn0058131 FBtr0111296 3 1 1 74 2R 80209 80228 CACATGATTCAAGATCAGGA 57 80265 80283 CTTCATATCCACAGTGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snRNA:U5:38ABb FBgn0043021 FBtr0081294 1 1 1 60 2L 19816434 19816453 GTCGAATAAATCTTTCGCCT 58 19816475 19816494 GACTCATTAGAGTGTTCCTC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33819 FBgn0053819 FBtr0091823 1 1 1 60 2L 21461625 21461644 GGTCAATGGAAAGCTTATCC 58 21461667 21461685 CGACAGTTTGAAAGATCCA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9265 FBgn0032910 FBtr0081507 1 1 1 81 2L 21060031 21062274 ACGAAGTTGGTGATATCACTC 59 21059970 21059988 AGATGGTCAGGTGTATCCA 59 NA Drosophila melanogaster 50 TotF FBgn0044811 FBtr0081310 3 1 1 79 2L 19912252 19912330 GAAGACAGTCATTCTATTTGGC 59 19912194 19912212 ATTCAGGATCACTCTGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15173 FBgn0032744 FBtr0081178 2 1 1 81 2L 19044078 19044167 TTGACAAAGAATTGGTTCGG 58 19044016 19044034 CGAAGGCCTCCTTAAAGAG 59 NA Drosophila melanogaster 50 CG17321 FBgn0032719 FBtr0081110 3 1 1 142 2L 18853449 18853547 TATTGGTGTTATCCTCGGC 59 18853653 18853671 GAGACACGTGATGAGTAGC 59 NA Drosophila melanogaster 50 CG5050 FBgn0032637 FBtr0080981 3 1 1 99 2L 17453347 17453365 GTTATTCACCATGGTGGTG 58 17453428 17453523 CTTCATGGAGCTATCCTGG 59 NA Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0110935,FBtr0080978,FBtr0080975,FBtr0110934,FBtr0080977,FBtr0080976 3 6 6 142 2L 17400817 17400900 CATTGGAGGCAAGAATGGA 59 17401006 17401024 TAGGCTCATCCAATTCCAC 59 NA Drosophila melanogaster 50 CG34106 FBgn0083942 FBtr0110785 1 1 1 60 2L 17171656 17171676 CGATTACTACGAGTTCTATGC 58 17171695 17171716 GGTATTAACTCTGTGTTCTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cact FBgn0000250 FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847 2 4 4 64 2L 16314857 16322976 GATTCGCAACTACGATGGA 59 16314811 16314829 AGATATCAATGTGACCCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4935 FBgn0028897 FBtr0080825 1 1 1 109 2L 16263173 16263272 TCGCATAAGTGATAATGGC 57 16263345 16263363 GCAAATCTGTCGAGAAGAC 58 NA Drosophila melanogaster 50 CG15253 FBgn0028948 FBtr0080782 1 1 1 61 2L 15616050 15616123 GATGAAGAACATCGTAACCAC 59 15616009 15616027 AGGCATGAAATGGATTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wor FBgn0001983 FBtr0080740 1 1 1 62 2L 15425379 15425397 AAGAAGCGTCCGATAATGG 59 15425273 15425355 TCCTTCATCATGACTTAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst35Bb FBgn0013301 FBtr0080681 1 1 1 77 2L 14882311 14882329 GAAAGGATAGATACCGCCG 59 14882203 14882221 ATTACTTGCAAATCCGTCG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG15283 FBgn0028844 FBtr0080632 3 1 1 135 2L 14447986 14448600 AAAGAAACTACAGAGGGCG 59 14447400 14447419 GAAAGTGATAAACGATGGCG 59 NA Nonspecific Drosophila melanogaster 50 CG16888 FBgn0032533 FBtr0080572 2 1 1 60 2L 13813211 13813230 CCGCTTATAGATTGAGTTGC 58 13813170 13813188 GAACGATTGGAGGTATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cmet FBgn0040232 FBtr0080215 1 1 1 80 2L 11262290 11262308 AGCTTGAGACGGAAATAGC 59 11262165 11262248 CAAAGGTAATCGATTTCCTCG 59 NA Drosophila melanogaster 50 l(2)06225 FBgn0010612 FBtr0110872,FBtr0110873,FBtr0080167 3 3 3 270 2L 10976161 10976268 GATCAGGACTTGTGAACAG 57 10975909 10975927 TTGTAGCCTACAATGTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4908 FBgn0032195 FBtr0079950,FBtr0079949 3 2 2 60 2L 10223340 10223359 ATGGATTACGATCAGAGGAG 58 10223382 10223400 CACAAAGTTTGTCTCCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5734 FBgn0032191 FBtr0079960 1 1 1 60 2L 10206166 10206184 AGAGATGCCAAGCTAACTG 59 10206124 10206142 CAACGGTCTGGTTGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ggamma30A FBgn0028433 FBtr0079796,FBtr0079797,FBtr0079795 2 3 3 82 2L 9272595 9291061 AATCCATAGCAGAAATGCG 58 9291107 9291125 ATTGTTCTTCTTATCCGGC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG7231 FBgn0031968 FBtr0079529,FBtr0079530 2 2 3 129 2L 7986072 7986144 GAACGTAAGTTTGCCTACC 58 7986237 7986255 CTGTTTGTAGCGCATACAG 58 NA Drosophila melanogaster 50 CG7115 FBgn0027515 FBtr0079523,FBtr0079524 3 2 2 127 2L 7823092 7823465 GGAGGATAGGTTTATTATCGAGG 59 7823552 7823570 AGATGTTCTTCACCAGCAC 59 NA Drosophila melanogaster 50 CG3430 FBgn0031875 FBtr0079350 2 1 1 285 2L 6958282 6958360 CCCAAAGAAGGATTATGAGAC 58 6958671 6958691 CTTAGAATCGGCATTAATGGG 58 NA DesignNoJunction Drosophila melanogaster 50 sens-2 FBgn0051632 FBtr0079341 3 1 1 284 2L 6832394 6832412 AATTCAGCGACCTGTACTC 59 6833112 6833130 AGTAGTTGCAGGGATAAGG 58 NA DesignNoJunction Drosophila melanogaster 50 Spn27A FBgn0028990 FBtr0079321 1 1 1 60 2L 6671917 6671935 AGGAATTCAACGTAAACCG 58 6671875 6671893 ATGTTACCAGTGGACTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34180 FBgn0085209 FBtr0112373 1 1 1 82 2L 6060609 6060682 CAAGGAATATCAGTTCATCCC 58 6060726 6060744 TGCATATGCTTAAGGGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9098 FBgn0031762 FBtr0079229,FBtr0079228 3 2 2 99 2L 6009175 6009248 AACAGCAAGCAAGTTTGAC 59 6009094 6009112 CATCTTGAACGTGTTGAGG 58 NA DesignNoJunction Drosophila melanogaster 50 Ucp4B FBgn0031758 FBtr0079174,FBtr0079173 2 2 2 60 2L 5969915 5969935 TTAACACAGTCTTTAGGCCAG 59 5969956 5969975 AACTTGGGTCTTTCCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8892 FBgn0031664 FBtr0079045,FBtr0079046 2 2 2 60 2L 4980268 4980287 CTTTATTCAGGAGGATGCAC 58 4980227 4980245 GTCATCATCGATGTACGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15425 FBgn0031591 FBtr0077471 1 1 1 69 2L 4258161 4258238 TTCATAGTGCTTGCAAACG 59 4258271 4258289 TTACTCATGTACGTGGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15387 FBgn0031403 FBtr0113015,FBtr0077841 1 2 2 60 2L 2226104 2226123 ACTCGAAGAAACTCTCAGAG 58 2226063 2226082 TGCATCATGAGAATCATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Got2 FBgn0001125 FBtr0077868,FBtr0100359,FBtr0077867 3 3 3 255 2L 1986023 1986041 TTCAAGAAGGACACCAACC 59 1985662 1985680 CAGTTCCACTGATGGACTG 59 NA DesignNoJunction Drosophila melanogaster 50 Ptth FBgn0013323 FBtr0078073 1 1 1 81 2L 576133 576153 CGATTTCTATGAGGATCTGGT 59 576014 576091 GAGCTCATTCGTAACTTTGC 59 NA Drosophila melanogaster 50 Cap FBgn0015615 FBtr0074291,FBtr0074290 2 2 2 95 X 16483582 16483674 GATGAGATAGATCAGGCGC 59 16483505 16483523 CGTTGTCGTAATGAACTGG 58 NA Drosophila melanogaster 50 Aats-arg FBgn0027093 FBtr0074178 2 1 1 116 X 15737019 15737100 AATCCAAGAAGCGATTCGA 59 15736921 15736939 CATTGCAAATTAGCTCCCA 58 NA Drosophila melanogaster 50 cngl FBgn0029090 FBtr0089294,FBtr0089293 3 2 2 83 X 15293119 15293253 GCCTAATGGTATACGACGA 58 15293054 15293073 GTATCAGCGCTATCATATCG 57 NA Drosophila melanogaster 50 Yippee FBgn0026749 FBtr0073789,FBtr0100168 1 2 2 60 X 13280864 13280882 TCAATTGATCAGTACCCGA 57 13280756 13280775 CACACGCTTAAACAGATAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15209 FBgn0030237 FBtr0073378 2 1 1 68 X 10736602 10736620 CAAGCTAACCTACACGGAG 59 10736652 10736670 TAAACATTGCGATTCTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071474,FBtr0071478,FBtr0071477,FBtr0071475 3 7 7 104 X 10172050 10172137 CCGAGGCCTTTAGATTCAG 59 10171964 10171982 ACAGCACAAAGTAGCTCTC 59 NA Drosophila melanogaster 50 CG34408 FBgn0085437 FBtr0071439,FBtr0112675 3 2 4 89 X 10120396 10120557 CCACCTATGATAATGCCCA 58 10120610 10120628 CATTCAGATCCGTCTTCCA 59 NA Drosophila melanogaster 50 CG15375 FBgn0029694 FBtr0070637 1 1 1 60 X 3996039 3996058 ATCCATAAGTTCCATACGCC 59 3996282 3996300 ATATAAGGCGGTACCTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 fz3 FBgn0027343 FBtr0112928,FBtr0070138 3 2 2 60 X 676920 676939 AGCATTTGTATACGAGTGGG 59 676960 676980 GCATATAGAGGAGTGATTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1674 FBgn0039897 FBtr0089118,FBtr0089119,FBtr0089117 2 3 4 81 4 254958 257026 CGCTAAATGAACCGAATGTC 59 257068 257088 GAATCATGGTCTGCTTTAGTG 59 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 3 14 14 110 3R 27690344 27690864 TAAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 CG2187 FBgn0017448 FBtr0085861 2 1 1 80 3R 27582880 27582898 TCGTGACAAATTCGTTCCT 59 27582762 27582836 TGTTCATGCCAGTAACCTG 59 NA Drosophila melanogaster 50 CG31202 FBgn0051202 FBtr0085510 1 1 1 60 3R 25754754 25754772 AGGCGATAGAGAAGTACTG 57 25754712 25754730 TTGTTAACGTCCATCACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Doa FBgn0053553 FBtr0110913,FBtr0110912,FBtr0091524,FBtr0091527,FBtr0091526,FBtr0113466,FBtr0091525,FBtr0091523 1 8 9 80 3R 24745224 24745242 CCGTCATTCAAGATGATGC 58 24745283 24745961 TGGCCATGATCTTATATCTGTG 59 NA Drosophila melanogaster 50 gro FBgn0001139 FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963 2 5 5 103 3R 21870081 21870172 CGCCATTATGTTATGTACTACG 59 21870236 21870254 AGTAGCTGGTTGATCAGTG 58 NA Drosophila melanogaster 50 gro FBgn0001139 FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963 2 5 5 103 3R 21870081 21870172 CGCCATTATGTTATGTACTACG 59 21870236 21870254 AGTAGCTGGTTGATCAGTG 58 NA Drosophila melanogaster 50 Eip93F FBgn0013948 FBtr0112874,FBtr0084169 2 2 2 131 3R 17821484 17821569 GAAGATTCTGAGAACAACCA 57 17821663 17821681 GTTAACACAGAAGTTGCAC 57 NA Drosophila melanogaster 50 Gr93b FBgn0045470 FBtr0084160 2 1 1 60 3R 17668306 17668324 ACTGACCCTGTTCTTTCTC 58 17668264 17668284 GCCGTACTGTACTAGAAAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sur-8 FBgn0038504 FBtr0083447,FBtr0083448 3 2 2 149 3R 13224765 13224783 GACCAGGATGTCATCAAGG 59 13224396 13224416 ACCGATCTTATTGCTGTACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14333 FBgn0038500 FBtr0083434 1 1 1 121 3R 13210387 13210405 TTGCGAATCATTTCAGCAG 59 13210490 13210508 GAACTTGTTGATCAGCTCG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31116 FBgn0051116 FBtr0082528,FBtr0082526 1 2 5 107 3R 7624475 7624582 TTATGCTGCAAGTAAACCCT 59 7624202 7624223 GTGATTGCTTTGAACTATCTCC 59 NA Drosophila melanogaster 50 Ugt35b FBgn0026314 FBtr0082375 3 1 1 60 3R 6995383 6995402 CATATCCACCTTTGGAACTG 58 6995342 6995360 TAGAGGAGATTCATTGCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9636 FBgn0037556 FBtr0081805,FBtr0081804 1 2 3 103 3R 4068191 4068210 GACAATAAGATCGTATCGCT 57 4068005 4068126 CTACTGCTAGGTTGAATCTG 57 NA Drosophila melanogaster 50 CG15594 FBgn0037421 FBtr0078604,FBtr0078603 1 2 2 60 3R 2113814 2113834 TACAACCATCGCTATAACGAG 59 2113853 2113874 GAGGATTCGGTTTGTAATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199 1 14 15 114 3R 1100031 1100465 GAGCACAACGTATTTGGTG 59 1099935 1099953 AATGGAACACCTTGAAGCT 59 NA Drosophila melanogaster 50 Nep2 FBgn0027570 FBtr0078891 2 1 1 80 3R 549287 549306 TAGCATGGACTACATCATCG 59 549092 549246 GACTGGTCCAGATCTATAAGC 59 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113339,FBtr0078898,FBtr0078902,FBtr0113341,FBtr0078899,FBtr0078901,FBtr0113340,FBtr0078897,FBtr0078900,FBtr0113338 3 10 15 217 3R 110087 110105 TAGCTAAGCAGATGGTTGG 59 120999 121298 GATGTTGTACTTATCGCGA 57 NA DesignRelaxed Drosophila melanogaster 50 CG9449 FBgn0036875 FBtr0074980,FBtr0110902 3 2 2 76 3L 19487943 19487964 GTAAATGAGACCTACTATCCCT 58 19487490 19487509 GTACCAATGTTGAACAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 GNBP1 FBgn0040323 FBtr0075050 1 1 1 80 3L 18670117 18670136 AACCTTTGCCTTTCAATACG 59 18670176 18670261 AGTAGTAGGAGTGGTACTATCC 59 NA Drosophila melanogaster 50 CG13063 FBgn0036601 FBtr0075366 2 1 1 154 3L 16299876 16299894 AGTCTCCTCTGGTTTATGC 58 16300012 16300030 GATGTCCTCCACTACATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5946 FBgn0036211 FBtr0110869,FBtr0110868 3 2 4 70 3L 11811201 11811219 GATCTGGTACACAGTCGAC 59 11810714 11810733 TCATATCATCGTTCACGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11658 FBgn0036196 FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127 2 5 5 89 3L 11694639 11694657 AACAAGGGTATTGCCAGTC 59 11694506 11694586 CTGGCTGTCATTTACATGC 59 NA Drosophila melanogaster 50 CG6175 FBgn0036152 FBtr0076183 2 1 1 138 3L 11284161 11284180 GAATTACTGCAACATCAGCG 59 11282659 11282677 GTGGTTGTACGTTAGGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34356 FBgn0085385 FBtr0112566 1 1 1 80 3L 9939057 9939075 CAAGGAGACCATAACGGAG 59 9939118 9939249 TAGATTTGTAGTATCCGCGG 59 NA Drosophila melanogaster 50 CG7387 FBgn0035852 FBtr0076723 1 1 1 60 3L 8185999 8186017 ATTGTTTGGAGTTGGATCG 58 8185957 8185975 ATCATCCGCATACAGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32271 FBgn0052271 FBtr0073105 3 1 1 64 3L 3202674 3202692 CAAAGTGTCCACCATTGAG 58 3202628 3202647 CAGAGACCTTGATCAGATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13561 FBgn0034906 FBtr0072243 2 1 1 83 2R 19692102 19692123 CATCCCTTCATTAACATCATCC 58 19691979 19692058 CAACACTATTTCCGGTGGA 59 NA Drosophila melanogaster 50 CG5174 FBgn0034345 FBtr0086688,FBtr0086685,FBtr0086684,FBtr0086689,FBtr0086687,FBtr0086690,FBtr0086686 2 7 7 274 2R 14311632 14311651 ATAATACAGCCAACCTGTCG 59 14311962 14311980 CTTGAGGTTCTTAAGGCCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34196 FBgn0085225 FBtr0112389 1 1 1 60 2R 13997581 13997600 CCATTCCCATGGACTATGAC 59 13997621 13997641 CGAAATAAGGCTGGATAATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hbs FBgn0029082 FBtr0087414,FBtr0087413 2 2 2 129 2R 10924646 10924866 TTTGACTGTCCTGTATGCT 58 10924959 10924977 TATGGACCAGCTAATTCGG 58 NA Drosophila melanogaster 50 CG34233 FBgn0085262 FBtr0112427 2 1 1 153 2R 8170328 8170346 CTGATAAGTAGCTGGCGAC 59 8171425 8171443 CATAAATTCCACGTGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13185 FBgn0033661 FBtr0113072 1 1 2 91 2R 7765780 7765853 CAAAGTAACTACAGAGGCAC 58 7765708 7765728 CCTCGATGATCTTACCTAGAG 58 NA Drosophila melanogaster 50 CG30035 FBgn0050035 FBtr0088073 3 1 2 109 2R 7558674 7560228 ATTTGGACACAGGTCTTGG 59 7560301 7560319 ATATTCCGATCGGTCATCG 59 NA DesignRelaxed Drosophila melanogaster 50 TpnC47D FBgn0010423 FBtr0088184 3 1 1 132 2R 7162451 7162469 ATATCCTCCGTCTTATGGG 57 7162279 7162297 TCTACGATGAACTTGGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414 1 10 10 69 2R 5991854 5991872 TGTCGACAGTCGATAAGGA 59 5991904 5992230 TCATCGTAACGTTCTGACTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG1371 FBgn0033482 FBtr0088428 2 1 1 111 2R 5962379 5962397 CTCTTTGGTAGTCTCAGGA 57 5962136 5962304 TGGCACTAAAGATTGTCCT 58 NA Drosophila melanogaster 50 CG2264 FBgn0033478 FBtr0088400,FBtr0088399,FBtr0088401,FBtr0088402 2 4 5 153 2R 5948857 5949128 GAGTTTCACAACCGTAGTG 58 5949244 5949263 AGTGTGGATTAACTCCAGTG 59 NA Drosophila melanogaster 50 Rad51C FBgn0033389 FBtr0088585 2 1 1 87 2R 5053968 5053986 TCAGTGCTGACAGAATTGG 59 5054034 5054142 TCATCACCACAACTATATTCCC 59 NA Drosophila melanogaster 50 Phax FBgn0033380 FBtr0088568 2 1 2 106 2R 5002591 5002610 ACACATTCTGGACTTAAACG 58 5002678 5002752 CGACTCGAACAAGTAATTCG 59 NA Drosophila melanogaster 50 Src42A FBgn0004603 FBtr0085968,FBtr0085967 2 2 2 81 2R 1896789 1896807 TACGGTTAAGCATTATCGC 57 1896852 1896937 CTGAAGGGTTCTGAATGTC 57 NA Drosophila melanogaster 50 Fas3 FBgn0000636 FBtr0112805 2 1 4 86 2L 18387308 18388391 CAAACGAAACTCAAATCGAC 57 18388440 18388458 CATTGGGTGTTTCCAAGAG 58 NA Nonspecific Drosophila melanogaster 50 Ugt36Ba FBgn0040262 FBtr0080909 2 1 1 60 2L 16795129 16795148 CTCCAATGTCAAGAGTTCCA 59 16795169 16795189 CAGGACCTTAAAGATGATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 crol FBgn0020309 FBtr0080260,FBtr0080263,FBtr0080261 1 3 4 149 2L 11797737 11797843 TGAAACCGATCATAATTCCC 57 11797607 11797625 CATTATGTGAGATGAGCGT 57 NA Drosophila melanogaster 50 CG33129 FBgn0053129 FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172 3 4 4 118 2L 10966083 10966101 GATCAAGACCACCTGTGAC 59 10965901 10966002 ATTGGTCAATGAACTTTGCC 59 NA DesignRelaxed Drosophila melanogaster 50 nrv2 FBgn0015777 FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382 1 5 5 84 2L 6791573 6791591 TTTGATCTGGTACAAGGGC 59 6791313 6791525 TACTTTGTACACCGCAAGG 59 NA Drosophila melanogaster 50 CG11015 FBgn0031830 FBtr0079288 3 1 1 286 2L 6558501 6558519 GACATGAAGGTCTTCAAGC 58 6559115 6559134 TATTTGGACAGCTAAGTGGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Cyp28d2 FBgn0031688 FBtr0079061 2 1 1 84 2L 5207745 5207764 GATCTATGCAACCGATTTCC 58 5207872 5207890 GTTGCCCAATATCATGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7337 FBgn0031374 FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012 2 5 5 130 2L 1937464 1937482 CACAATACGGAGAATGGGA 59 1937575 1938518 CTATGGCCTACATTCTCCAG 59 NA Drosophila melanogaster 50 CG6540 FBgn0030943 FBtr0074601 3 1 1 110 X 18542383 18542401 CAACCAGACCCAGTATCTG 59 18542472 18542552 GTGGCGAAACTTATATTAGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp5D FBgn0029837 FBtr0114466,FBtr0070888 1 2 2 137 X 5964737 5964899 CCTGGTATTGTACTTTATGCTG 58 5964621 5964639 TTATAATGCCGCTCGATCC 59 NA Drosophila melanogaster 50 CG10802 FBgn0029664 FBtr0070568 2 1 1 123 X 3377106 3377186 TCCTGAAGGAGTTCAAGAC 58 3377273 3377291 AATAGTATCGTGTCCTCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2712 FBgn0024975 FBtr0070488 3 1 1 137 X 2627431 2627449 GAAATCAGCACAGACTTCG 58 2627618 2627638 TGCATATGGTACTTGAAGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14805 FBgn0023514 FBtr0070312 3 1 1 81 X 1772160 1772178 CTAGGGTGTATGTTGGCTC 59 1772222 1772298 AGGTGATATTCCTTCATGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13360 FBgn0025620 FBtr0070147 1 1 1 100 X 682698 682716 TCACTGTGCTTAATCATGG 57 682552 682634 GAAATCCACGAATATGGCA 57 NA Drosophila melanogaster 50 Gcn2 FBgn0019990 FBtr0085787 3 1 1 135 3R 27223214 27223233 CTTCTAGAACTTCTGAGCGG 59 27223331 27223402 GGTCCGAGTTACACTTGTC 59 NA Drosophila melanogaster 50 CG5902 FBgn0039136 FBtr0084501,FBtr0084502 1 2 2 191 3R 19812925 19813001 AGTAGCAGAAGACGATTAGAG 58 19813154 19813172 TTGTTGTAGTGGGAGTTGG 59 NA InUTR Drosophila melanogaster 50 RpS3 FBgn0002622 FBtr0084410 2 1 1 67 3R 19185337 19185355 CAACGACTATGTCGAGACC 59 19185386 19185404 TGACCTTGATACCAAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cby FBgn0067317 FBtr0084136 2 1 1 85 3R 17693874 17694045 CTTCAAGCAGTTGTTTGCA 59 17694094 17694112 CTATATTGCAACGTCCCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14709 FBgn0025701 FBtr0082411 3 1 1 80 3R 7399573 7399658 CTTATCGTACTGGGTGGAC 59 7399700 7399720 GCGGCAAAGTAATACATATCC 59 NA Drosophila melanogaster 50 Prat FBgn0004901 FBtr0081764 2 1 1 60 3R 3736865 3736883 AGGTACATACGACACATGG 58 3736823 3736841 TCGTTGTTAACAAGCTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Alh FBgn0037471 FBtr0081613,FBtr0113199,FBtr0081612,FBtr0081614,FBtr0081615 2 5 6 159 3R 2926921 2926942 CAACTTGAAGATCAGCTATGAG 58 2925169 2925187 GACCAAGGGAGATGTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Psn FBgn0019947 FBtr0078192,FBtr0078193,FBtr0114517 2 3 3 80 3L 20426898 20426919 GTGTTCATTAAATACCTGCCTG 59 20426959 20427050 AAGGACAGCAATAAGATCCC 59 NA Drosophila melanogaster 50 pip FBgn0003089 FBtr0075011 1 1 11 101 3L 19294145 19294163 TGAGTGTCTCTTTGTGCAG 59 19294010 19294081 TTAAAGGGTAGACAATCGGC 59 NA Drosophila melanogaster 50 ftz-f1 FBgn0001078 FBtr0075086,FBtr0075087 3 2 2 88 3L 18747722 18748241 AAATTGTGCTTCGATTCTGG 59 18747589 18747607 AATTCACGAATCATCGGTG 58 NA Drosophila melanogaster 50 Su(P) FBgn0004465 FBtr0075359 3 1 1 131 3L 16604094 16604112 AGGAACACGAAATTCATGG 58 16603919 16603999 AAACCATTTACCGATGCTG 58 NA Drosophila melanogaster 50 CG15005 FBgn0035508 FBtr0073255 3 1 1 60 3L 4202045 4202064 CCTCCAGTTATGATCAACCT 58 4202004 4202022 GATGTTGGAGGATGTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Teh3 FBgn0040697 FBtr0073257 3 1 1 79 3L 4183947 4183965 CATCAATGCCGAAACTCTG 59 4183886 4183904 GCCTGATGAAGTAACACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13902 FBgn0035166 FBtr0072595 2 1 1 115 3L 840958 841048 CTTCAAGAGCACTAGTCCC 59 840861 840879 GATAATCCATTAGGGCGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30178 FBgn0050178 FBtr0072159 1 1 1 70 2R 19874352 19874371 TGGTGGTTGATCCTAAACTG 59 19874404 19874422 CTTGTCCAGATAGCACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp12d1-d FBgn0053503 FBtr0089418 2 1 1 87 2R 7012516 7012534 ATCTTTATGCAACCCAGGG 59 7012383 7012465 GGATTTCCTTAATGCGCTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG8027 FBgn0033392 FBtr0088609 3 1 1 92 2R 5093028 5093047 AAACTGCACAAGAAATCTGG 58 5092898 5092973 GGCAAATTAGAGTCCTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 Gli FBgn0001987 FBtr0080769,FBtr0080766,FBtr0080765,FBtr0080768,FBtr0080767 2 5 5 92 2L 15758071 15758151 GCTAGATATGGCAATCCGA 58 15757997 15758017 GGTATTGATGTTCAAGTACCG 58 NA Drosophila melanogaster 50 CG34164 FBgn0085193 FBtr0112355 1 1 1 75 2L 12057122 12057140 TAAATGAGTTTCTGTGCGC 58 12057246 12057264 TTGTACGAGACGGATACCT 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 hgo FBgn0040211 FBtr0080201 1 1 1 101 2L 11137692 11137776 GATGTAAAGGACTTCCAGGT 59 11137840 11137858 ATAGTTACCATGCCAAGCC 59 NA Drosophila melanogaster 50 CG31718 FBgn0051718 FBtr0080015 3 1 1 118 2L 10407547 10407565 AACGAGATCTGTGATCTGC 59 10407647 10407860 TGGGCATTACACATAGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31694 FBgn0051694 FBtr0077685 3 1 1 98 2L 2871046 2871065 CTAACACTTATACCTTCGGG 57 2870896 2870914 TGTAGATTGCAAGAGACCC 58 NA DesignNoJunction Drosophila melanogaster 50 net FBgn0002931 FBtr0078162 2 1 1 60 2L 84053 84071 ACTCCCAACTCTAAATCCA 57 84011 84030 GACCAGTTGCATTCATACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11374 FBgn0031214 FBtr0114507 2 1 1 60 2L 77477 77498 TAAGTATCAAATGAGGCCAGAG 59 77519 77537 AAGCTTGATATCTCCACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mt:tRNA:K FBgn0013697 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-U3344b FBgn0086048 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me18S-G1358b FBgn0086054 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-A2634a FBgn0082946 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me5.8S-G74 FBgn0086066 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30506 FBgn0050506 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snmRNA:430:CR33739 FBgn0053739 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 stnB FBgn0016975 FBtr0111138,FBtr0111137 1 2 2 81 X 22386913 22387148 ACCATCAAATTTCAACCACC 58 22386851 22386869 GAAGTTCACGATTCTTGGG 58 NA Nonspecific Drosophila melanogaster 50 CG41473 FBgn0084033 FBtr0111204 3 1 1 119 X 22120157 22120175 TCACGTTGTTTATGCTGAG 58 22120258 22120276 TTATATCCTCGCTCTGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17450 FBgn0040028 FBtr0070057 1 1 2 252 X 21478404 21478545 GAACATGAATCGCAACCTC 59 21478170 21478188 GATGTGCAGTGGTATCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 sol FBgn0003464 FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676 1 4 4 80 X 21228148 21228166 AGAGCTACAATGTGGTGTC 59 21228209 21228297 CGATGATTACTTGTCTCTGC 58 NA Drosophila melanogaster 50 CG1801 FBgn0031171 FBtr0077231 3 1 1 80 X 21179300 21179321 CAGCCATGGATTCTATCTAGAG 59 21179168 21179259 TCCTTACGCAAATTCTCCT 58 NA Drosophila melanogaster 50 CG34120 FBgn0083956 FBtr0110827,FBtr0110826 2 2 2 75 X 21003954 21003972 ATCGGTTCGACATCATACG 59 21004250 21004268 TAGTTCATTCGTCGTTCGA 58 NA DesignNoJunction Drosophila melanogaster 50 Syx16 FBgn0031106 FBtr0077330 3 1 1 161 X 20264589 20264607 GAATCACTACGACGATCGG 59 20264310 20264391 GGCTTGATCTTAGACATGGT 59 NA DesignRelaxed Drosophila melanogaster 50 para FBgn0003036 FBtr0111022 2 1 3 175 X 16375502 16375520 GTACATCTGCCACAAAGAC 58 16374822 16375364 TTAATTAGCGACAGCATGAC 58 NA Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 2 7 7 82 X 15717700 15717788 GATCCATTGCTTGAGACTG 58 15717832 15717852 TCGTAGAGATCTTTAAGTCCC 58 NA Drosophila melanogaster 50 Paf-AHalpha FBgn0025809 FBtr0074191,FBtr0074190 1 2 2 60 X 15678437 15678456 AAATCTAACCAATGCTGGAG 57 15678396 15678416 TTGAGAAAGCAGATCGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0168 FBgn0027287 FBtr0074042,FBtr0074043 2 2 2 204 X 15403948 15403966 AAGGTGGGACTCAATAAGC 59 15404195 15404213 ATGTCACTCCATCCATCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9164 FBgn0030634 FBtr0074012,FBtr0074014 1 2 3 74 X 15276618 15276636 CATGAACAACATACCCGGA 59 15276372 15276581 CTATGAAAGCTGGGAAACTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 gce FBgn0030627 FBtr0074004 1 1 1 80 X 15210002 15210162 GCAATGATATCATTCTGACTGG 59 15210203 15210221 GTGTATTGGCATCGATCAG 58 NA Drosophila melanogaster 50 Flo-2 FBgn0024753 FBtr0073954,FBtr0073952,FBtr0073950,FBtr0073953,FBtr0073951,FBtr0073949 1 6 6 77 X 14825993 14826012 ATATTGTACTCGAATCGCTG 57 14826114 14826132 TTAGGACAATCTCATCGGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG32614 FBgn0052614 FBtr0073867 1 1 1 60 X 14026099 14026120 CTTTAACATCAAGATGCTAGCG 59 14026139 14026159 CATGTCAACCTCATTTGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11068 FBgn0030536 FBtr0073854 1 1 1 60 X 13849934 13849953 AAGTTGTCCCGTCTAAAGAC 59 13849974 13849994 CCAATAGATTGTCGTACTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15754 FBgn0030492 FBtr0073782 2 1 1 112 X 13422921 13422939 GGTTGAGGGCTTCTATGTC 59 13423015 13423103 TCAGAAACTCAACTGGACG 59 NA Drosophila melanogaster 50 CG34324 FBgn0085353 FBtr0112526 2 1 1 205 X 13350951 13350969 ACAATCCAGTTGCTATTGC 58 13350764 13350782 ACAGTTGTTGACGGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sno FBgn0005410 FBtr0112848 3 1 4 93 X 13094934 13096787 CTTTATTGGCGCAGATGAG 58 13094859 13094878 TTCTGATTATTCCCGACTCC 58 NA Drosophila melanogaster 50 l(1)G0237 FBgn0027259 FBtr0073541 3 1 1 67 X 11465883 11465903 CAATATGGACGATCACTACCT 59 11465836 11465856 CCATATTCTGGTGTATAGCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32666 FBgn0052666 FBtr0073507,FBtr0073508 1 2 2 124 X 11445270 11445288 GACCTTCCTCAACATCTCG 59 11445376 11445818 CATTCATGCGATCGTTTGG 59 NA Drosophila melanogaster 50 Atg8a FBgn0052672 FBtr0071498 2 1 1 61 X 10659672 10659690 TTGTGAACAACGTCATTCC 58 10659560 10659647 GTGATGTTCCTGGTACAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG1468 FBgn0030157 FBtr0071388 2 1 1 60 X 9773041 9773059 ACAGAAGCACCAGATACAG 58 9773083 9773101 CAGAGTCCTCTTCATTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34449 FBgn0085478 FBtr0112753 3 1 3 85 X 9227649 9230970 GCTTTACAGTAAGCTATCGC 58 9227583 9227601 GTTCACAGTCCTGACTCTG 59 NA Drosophila melanogaster 50 CG12065 FBgn0030052 FBtr0071215,FBtr0071214 3 2 4 95 X 8480265 8480589 ATACACCACAGTCGATTCC 59 8481296 8481315 CCCAGAGTATACACATTCGA 58 NA Drosophila melanogaster 50 Trxr-1 FBgn0020653 FBtr0071168,FBtr0071167,FBtr0071169 1 3 3 61 X 8140427 8140445 ACATCAAGTCCGTCAACTG 59 8140468 8140558 GATGTACTCCACTTTCTTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG12689 FBgn0029952 FBtr0071081 2 1 1 61 X 7479777 7479798 GATACGAATAGTTGAACACCAG 58 7479737 7479755 AGTTCACAGGTCTTTGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11368 FBgn0040923 FBtr0071058 1 1 1 203 X 7346266 7346284 CAAGATGCATCTGAACCTG 58 7346525 7346543 ATTTAACCGGTAGATGCAG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 iav FBgn0086693 FBtr0070969 2 1 1 107 X 6710342 6710360 TCCTCTACAAGGGACATCC 59 6710427 6710507 GATCGGGATAGTTATAATCACCC 59 NA Drosophila melanogaster 50 RpL7A FBgn0014026 FBtr0070915,FBtr0070916,FBtr0070917 1 3 3 84 X 6425868 6425886 CGATGTTGATCCTCTGGAG 59 6425399 6425417 CTTACCCTTCACAATGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6067 FBgn0029828 FBtr0070864 1 1 1 120 X 5851296 5851314 TCACTAGCTGCATCTTCAG 59 5851467 5851485 GTCACTCCGAATACGAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12236 FBgn0029822 FBtr0070826 1 1 2 237 X 5803807 5803825 GAAATACTCACCGAGTCCG 59 5804088 5804477 TATTGGGCGAATCATTCGT 59 NA DesignRelaxed Drosophila melanogaster 50 norpA FBgn0004625 FBtr0100671,FBtr0100670 1 2 4 89 X 4247570 4247588 TGACGATCTGTTCGAACAC 59 4247641 4247989 CATCTAGCCAGATCTTGGC 59 NA Drosophila melanogaster 50 CG32776 FBgn0052776 FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630 3 4 4 89 X 3791673 3795151 CCTGAGTCTCGATGATGAC 59 3791602 3791621 GCGGGATGATCAATAATCTC 58 NA Drosophila melanogaster 50 CG2947 FBgn0029676 FBtr0100247,FBtr0070598,FBtr0070597 1 3 3 80 X 3685382 3685400 ATGTCTGATATACTGGGCG 58 3685518 3685536 GATGTTACCCGGATTTGAC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG2875 FBgn0029672 FBtr0070586,FBtr0070587 2 2 2 67 X 3466639 3466657 ACTTTCTCATGGACTCCCT 59 3466528 3466546 AAAGATTCCCTGAAGAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514 3 9 14 87 X 3215172 3215190 CGTTTCTATATCGCTCCGA 59 3215240 3219968 TCTTTAAACCTTTCGCTAGC 58 NA Drosophila melanogaster 50 CG32795 FBgn0040384 FBtr0070492,FBtr0070491,FBtr0070493 1 3 3 89 X 2679095 2679113 CACAAGATGACCTTGAAGC 58 2678712 2679044 CAGGATTATCTGCAAATAGCG 59 NA Drosophila melanogaster 50 ptr FBgn0003159 FBtr0070404,FBtr0070403,FBtr0070402 1 3 3 89 X 2243030 2243048 GAGTAAGCTCTTGTCCCTC 59 2242892 2242910 TACACCTGACTAGCATCCA 59 NA DesignNoJunction Drosophila melanogaster 50 sta FBgn0003517 FBtr0070291 1 1 3 60 X 1376969 1376988 GAGGTTATGTCCACTAACCA 58 1376928 1376946 AACGTGGAAAGAGTTACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3655 FBgn0040397 FBtr0070181,FBtr0113327 1 2 2 131 X 970325 970475 CAATCTTCAGGTCCATCCC 59 970212 970230 GTTAGGTAAAGGTGCTGGA 58 NA Drosophila melanogaster 50 CDC45L FBgn0026143 FBtr0070182 3 1 1 60 X 923239 923257 AGGAGTTCTTCTCGATGGT 59 923197 923217 TAAACTATGTCCGCTATGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TRAM FBgn0040340 FBtr0070168,FBtr0070167,FBtr0070169 1 3 3 60 X 830597 830615 ATATGGCAAGCCATACACC 59 830639 830657 GTAGAAGAATATCGCGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12467 FBgn0025623 FBtr0112912,FBtr0112913 2 2 2 101 X 712956 712974 CACCTAACTGTCGTTTCTG 58 712815 712891 CAGAACACAGTTAGGATCG 57 NA Drosophila melanogaster 50 CG4293 FBgn0024983 FBtr0100476 1 1 4 176 X 423557 423676 GTAAGCTGAAACATGACGG 58 423341 423359 CGTGTAAACCAGGTAAACG 58 NA InUTR Drosophila melanogaster 50 CR41607 FBgn0085817 FBtr0114275 1 1 1 60 U 4305913 4305931 TCTCGAATCTATGGGTGGT 59 4305955 4305973 AACCAGACAAATCACTCCA 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41556 FBgn0085687 FBtr0114136 1 1 1 60 U 4985661 4985680 GTTATGGTTTGTGCAGATCG 59 4985701 4985721 CGTGTTATCTGAAGAAATGCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41246 FBgn0085572 FBtr0114015 2 1 1 100 U 1570112 1571136 TATTCGCAAATTGGGTTCC 58 1570030 1570048 CTGGCCTATAGGTAATGGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG41041 FBgn0069966 FBtr0114295 1 1 1 71 U 403048 403066 GTATGGGACAACTCTTCCA 58 402995 403013 TTCTGTTAACTCAGGGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pncr013:4 FBgn0041005 FBtr0091952 2 1 1 60 4 488578 488596 GAAGACGTCTACCATTCAC 57 488619 488638 CAGATTATCCACCCTTACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sv FBgn0005561 FBtr0100344,FBtr0100346,FBtr0100343,FBtr0089327 1 4 7 95 4 1129117 1129138 CCGTTAGTTCCTATTAGTATGC 58 1129194 1129748 GTCAAATGCTAGAGCTGTG 58 NA Drosophila melanogaster 50 plexA FBgn0025741 FBtr0089226,FBtr0089223 3 2 5 194 4 1043035 1043053 GATGATGTCCTCTTTGCTG 58 1040633 1042878 TTGCAGTTTCGTTAGAACAC 58 NA Drosophila melanogaster 50 CaMKI FBgn0016126 FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089063,FBtr0089065 2 7 7 120 4 473264 473285 CCCTATTGGGATGAAATTAGTG 58 473365 473442 CATTTCCAGAAATCCAAGCA 58 NA Drosophila melanogaster 50 pncr002:3R FBgn0063127 FBtr0091948 2 1 1 60 3R 2525501 2525521 TCCAAGAACTAAGAGCTAAGG 58 2525461 2525479 TACCAATAGGTGTTCTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gammaCop FBgn0028968 FBtr0085794,FBtr0085793 2 2 2 106 3R 27400822 27400840 TGCCGTCAACACTATAGTC 59 27400910 27400986 TGAAGGTTCCTGAACAGAG 58 NA Drosophila melanogaster 50 Prosalpha3T FBgn0039819 FBtr0085738 1 1 1 60 3R 26948798 26948816 TCAGTTCAACTTCGGTGAG 59 26948756 26948774 GATATCGCAAAGGTTCGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12071 FBgn0039808 FBtr0085717 2 1 2 132 3R 26704772 26704870 GCCCTATATTTGTGAAGTGTG 59 26704660 26704678 CTTCACCATGTTGTTCAGC 59 NA Drosophila melanogaster 50 PH4alphaSG1 FBgn0051014 FBtr0085686 3 1 1 94 3R 26329653 26329671 TACAATCTGCACAGTTCCA 58 26329523 26329595 AACCACTCATTGCAAATCC 58 NA Drosophila melanogaster 50 CG15530 FBgn0039752 FBtr0085568 3 1 2 89 3R 26005341 26005359 AATCGCAAGGTTAATCCGA 59 26005410 26005495 GAATCTACGCTTTCTTCACAG 59 NA InUTR Drosophila melanogaster 50 CG31033 FBgn0039705 FBtr0085530,FBtr0085529,FBtr0085528 1 3 3 80 3R 25653846 25653866 CATATGCTCTGTAAGAGACGA 59 25653707 25653804 TGTTCGTTTGTAAACGTGG 58 NA Drosophila melanogaster 50 Ef1gamma FBgn0029176 FBtr0085392 2 1 2 147 3R 25046022 25046162 GTGAAAGGAACTCTGTACAC 58 25046272 25046290 GGAACTTCTTGAGGAACTC 57 NA Drosophila melanogaster 50 CG33346 FBgn0053346 FBtr0085306 1 1 1 60 3R 24495783 24495804 CAGCAATTGGAAGATAGTTGAG 59 24495825 24495843 GCAGACATTTAGCACATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wdb FBgn0027492 FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206 3 7 7 131 3R 23392424 23392442 AAATTCTTAGGACTGCGGG 59 23392247 23392330 GAATCCGTTGATGATACTGC 58 NA Drosophila melanogaster 50 CG6066 FBgn0039488 FBtr0085131 2 1 1 60 3R 22941723 22941743 TGAAGGGTTCTTACATAGGAC 58 22941683 22941701 TTCTTGTGCTTTCTCTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31080 FBgn0051080 FBtr0085032 1 1 1 73 3R 22459633 22459651 TATAACTACCAGCCTGCAG 58 22459688 22459706 GAAGGAGAGTAACTGGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31093 FBgn0051093 FBtr0084917 2 1 1 68 3R 21615954 21615972 ATCTCTGGCTAGAAATGGA 57 21615904 21615922 GTAGCTACTGGAATGTCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 jigr1 FBgn0039350 FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887 3 6 6 98 3R 21474749 21474768 GTACGATAGGTCAAACAAGC 58 21474829 21474919 CTTATACTGGTGGCATCGT 59 NA Drosophila melanogaster 50 CG4673 FBgn0039348 FBtr0084893,FBtr0084892 1 2 2 80 3R 21448136 21448154 CGATCAATATTCAGCCGGA 59 21448014 21448094 TCCAACCAATCTTCTTCAGTC 59 NA Drosophila melanogaster 50 CG31105 FBgn0051105 FBtr0084731 2 1 1 80 3R 20683515 20683594 TGGTTCGAAGTATTCAGTACC 59 20683455 20683474 GAGTATCTCGAATATGGCCA 58 NA Drosophila melanogaster 50 CG7006 FBgn0039233 FBtr0084704 2 1 1 79 3R 20676463 20676481 CAAGATCTTGTTCGAGCAC 58 20676575 20676593 AATATGTTCCATCTGGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10170 FBgn0039085 FBtr0084420 2 1 1 60 3R 19359330 19359349 ATATGTGATCGAACAACCTC 57 19359289 19359307 GAATAGCCGAGTATTGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4624 FBgn0039058 FBtr0084401 3 1 1 60 3R 18983989 18984007 CAAGAAGAATGTGCAGACC 58 18983947 18983967 AATGAACGAGTAGAAGATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34376 FBgn0085405 FBtr0112609 1 1 2 269 3R 18283136 18283154 AACGAACTGTATATGCCCA 58 18285751 18285769 GTTGGTCACGATTATGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 3 22 22 87 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202451 17202547 TTGTTCAGGAATACGATAGC 57 NA Drosophila melanogaster 50 CG17298 FBgn0038879 FBtr0084056 2 1 1 154 3R 17109002 17109317 CAAAGTACTGTTCGTGCTC 58 17109435 17109515 GATGAACAACATGGGAGTG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31207 FBgn0051207 FBtr0084044 1 1 1 60 3R 16872077 16872098 TTGAAGATATACGAGCTAACCC 59 16871974 16871992 TGTCTAGCCAGAATACCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG17270 FBgn0038828 FBtr0083994 2 1 1 60 3R 16643045 16643065 TAACTTCTACGTGATCTTCCC 58 16642911 16642930 ATAGATGAGGCCCAGTAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5191 FBgn0038803 FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905 1 5 5 101 3R 16396364 16396823 GTCGACAGGTAAATCCTCTG 59 16396887 16396905 TAATGCCCATCGCTATCAC 59 NA InUTR Drosophila melanogaster 50 att-ORFB FBgn0067782 FBtr0090034 3 1 1 135 3R 16379404 16379422 CTTCACCAAGATCTGGGTG 59 16379031 16379306 CACTTCATAGTATTCCCGCT 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 mira FBgn0021776 FBtr0083847,FBtr0083848 3 2 2 62 3R 15758837 15758855 ACTACCAGCTGACTTTGAC 59 15758793 15758811 TCTTTAGACGCTCCATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4572 FBgn0038738 FBtr0083861,FBtr0083860,FBtr0083862 2 3 3 60 3R 15688809 15688827 GTGGGCAATAAGACATTCC 58 15688767 15688785 TCTTCAAGTGAAGTTCCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7718 FBgn0038649 FBtr0083682 1 1 1 60 3R 14570960 14570978 ATGAAGGTCTACCTGTTCG 58 14570918 14570936 AGTCATTGGACAGATTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14302 FBgn0038647 FBtr0083673 1 1 1 181 3R 14558519 14558537 CTGTTTAGCCTCTGTCTGG 59 14558682 14558700 TAGATGGTCGACGTTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fru FBgn0004652 FBtr0083641,FBtr0083643,FBtr0083645 1 3 13 90 3R 14340833 14340851 GAACATCGAAACGGATGTG 59 14261500 14340779 GTCAGTGTTGTACCTAGGG 58 NA Drosophila melanogaster 50 koko FBgn0051232 FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629 2 5 5 155 3R 14229544 14229623 TACGATGAGTTCCTCATTGC 59 14229741 14229759 CATCGACCAGTACTCATCG 59 NA Drosophila melanogaster 50 Rim FBgn0053547 FBtr0091514 2 1 1 82 3R 13715372 13715390 ACATCGATGGAATGACTCC 59 13713257 13715326 TAGATCGAGCTCTAGCAGG 59 NA Drosophila melanogaster 50 CG5255 FBgn0038485 FBtr0083406 1 1 1 60 3R 12964441 12964460 CACTCACCTAAGTCTATCCA 57 12964483 12964501 AGCAATCATTTCCTCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Abd-B FBgn0000015 FBtr0083382,FBtr0083385,FBtr0083384,FBtr0083381,FBtr0083383 2 5 5 121 3R 12755453 12755471 GTACTCGAAGTTCCAGACC 59 12755293 12755368 ATATCTTGACCTGTCGCTC 58 NA Drosophila melanogaster 50 CG14906 FBgn0015351 FBtr0112880,FBtr0083355 1 2 2 60 3R 12475850 12475868 CCCACTTCACTTCAATTGG 58 12475808 12475827 ACTTCATATAGCCTTTCGTC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 gish FBgn0011253 FBtr0100331 3 1 8 143 3R 12122933 12122951 TATTTGCGTTATGTACGGC 58 12123057 12123187 CTATGTCTCCATTGTCTTCC 57 NA Drosophila melanogaster 50 pnr FBgn0003117 FBtr0083220,FBtr0083221 2 2 2 128 3R 11865150 11865168 CATTCAGACCAGGAAACGA 59 11865260 11865346 GGTTTGAGATCATGCTCCT 59 NA Drosophila melanogaster 50 CG9632 FBgn0038377 FBtr0083185,FBtr0083186 1 2 2 67 3R 11686256 11686274 AAGAAGCTCAAGAGAAGGC 59 11686305 11686323 TCAATATCGGTCGGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sra-1 FBgn0038320 FBtr0083085 2 1 1 87 3R 11161917 11161935 CAGAATAACACTGCACGTC 58 11161986 11162065 TCGAATGAAACGATTCGTG 58 NA Drosophila melanogaster 50 Hsc70-4 FBgn0001219 FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056 2 6 6 71 3R 11071531 11071549 GGTATCCTCAACGTGACTG 59 11071584 11071602 CTTGTCGTTGGTAATGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082802,FBtr0082801,FBtr0082806 1 3 8 95 3R 9488692 9488710 ATCATCCTCTCGTTATGGC 58 9488769 9491188 TAATCCTTGAGATCCTGCC 58 NA Drosophila melanogaster 50 CG12360 FBgn0038111 FBtr0082718,FBtr0082717 3 2 3 80 3R 8855690 8855708 CGACAACACTTTCTACGAC 58 8854594 8855646 CTGATAAGGCTCTCATTGC 57 NA Drosophila melanogaster 50 Csk FBgn0086903 FBtr0082447,FBtr0082446,FBtr0082444,FBtr0082448,FBtr0082445 3 5 5 85 3R 7460836 7460854 AAATCAGACATGTGGAGCT 58 7460708 7460787 TCGGCTAATGGAATTCTGG 59 NA Drosophila melanogaster 50 CG17187 FBgn0037882 FBtr0082365 3 1 1 109 3R 7057384 7057404 GAATCTTTACGATCTTCTGGG 58 7057295 7057313 GATTGTCCGGATTCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nocturnin FBgn0037872 FBtr0113220,FBtr0113218,FBtr0113219 3 3 3 96 3R 7032963 7033087 ACATCCTATCACAAACTCTCG 59 7033145 7033163 TGGACAATCAGGTACTTGC 59 NA Drosophila melanogaster 50 hth FBgn0001235 FBtr0100455,FBtr0082254,FBtr0082255,FBtr0100454,FBtr0082253,FBtr0082256 3 6 6 93 3R 6417178 6419287 GAAGTCGACTCACTGATGG 59 6411623 6411644 GACAGAAGTTATCGCATAACTC 58 NA Drosophila melanogaster 50 tws FBgn0004889 FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190 2 8 8 80 3R 5954404 5954423 ATCTCCAGGGATTACTTGAG 58 5954229 5954361 TTCATGAACCGGATAGGTC 58 NA Drosophila melanogaster 50 CG12947 FBgn0037753 FBtr0113213 3 1 2 102 3R 5608195 5608275 CGACTATCTTACAGAGTACCTG 59 5608338 5608356 CACATTCGGAAAGCAATCC 59 NA Drosophila melanogaster 50 unc-115 FBgn0037733 FBtr0082095,FBtr0082094 2 2 4 61 3R 5515793 5516164 TTAGCGAGATGTACATCCG 58 5515750 5515771 GCTAGAGGAATAAAGTGAACCA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Kap-alpha3 FBgn0027338 FBtr0082108,FBtr0082106,FBtr0082107 3 3 3 158 3R 5402864 5402942 GAAAGACCAGGATGAAATGC 59 5402725 5402743 TTCTTCAGGTCAATGGACG 59 NA Drosophila melanogaster 50 Aats-trp FBgn0010803 FBtr0081981,FBtr0081980 1 2 2 70 3R 5091868 5091886 TTCGATGTCAACAAGACGT 59 5091758 5091776 TTCTGATACATGGCAGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11986 FBgn0037656 FBtr0081967 3 1 1 194 3R 4841805 4841823 GACAAGAATACATGGTCGC 58 4841981 4842065 CAGCCAATCATTCATCTGC 59 NA Drosophila melanogaster 50 mRpS18A FBgn0051450 FBtr0081897 3 1 1 63 3R 4388185 4388203 AGGACAGTACGAAGTACCA 59 4388140 4388159 TTATTTGCCTTGGCATTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp85a FBgn0037589 FBtr0081849 3 1 1 234 3R 4246003 4246021 CCGGAAATTCAACTTTGCC 59 4245730 4245748 GAGAGTGAATCGTCTTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 stck FBgn0020249 FBtr0081845,FBtr0081846,FBtr0081844 2 3 3 221 3R 4184861 4184937 GCTAACGATATGAACGAACTG 59 4185120 4185138 CTGATGATAGTGCGTCTCG 59 NA DesignRelaxed Drosophila melanogaster 50 eIF4AIII FBgn0037573 FBtr0081834 1 1 1 91 3R 4139539 4139557 ATTGGACTACGGTCAACAC 59 4139612 4139685 TCTTGATGGCTCTTGTTCG 59 NA Drosophila melanogaster 50 Tom34 FBgn0010812 FBtr0081788 3 1 1 133 3R 3860479 3860500 GACGAATACATTAAGGACAAGC 59 3860594 3860671 TGCAGTATTCCTTCTCTGG 58 NA Drosophila melanogaster 50 CG34023 FBgn0054023 FBtr0100078 3 1 1 63 3R 3246248 3246266 CTATTCCCGAGTGGTATGC 59 3246292 3246311 TTAATGCCATTTGAGGTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31493 FBgn0051493 FBtr0081566 2 1 1 78 3R 2957689 2957707 GAAAGTGGCAGAATTGTGG 59 2957809 2957828 CGCAAATGTCGTAGTATGAG 58 NA DesignNoJunction Drosophila melanogaster 50 Alh FBgn0037471 FBtr0113199 2 1 6 87 3R 2922537 2922621 ATTTGGGAATGAGACACGT 59 2922468 2922486 CTACTGGCAGTTAAGCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Rheb FBgn0041191 FBtr0078693,FBtr0078694 1 2 2 80 3R 1395126 1395144 ATCGTCGCTATGCATACAG 59 1395187 1395309 ATCTTGGTGAAGGTGTTCTC 59 NA Drosophila melanogaster 50 Itp-r83A FBgn0010051 FBtr0078686 1 1 2 92 3R 1356982 1357000 TAAGACTTACGAAGACGCT 58 1357055 1357390 CACCTTCGGAATCAATATCC 58 NA Drosophila melanogaster 50 tacc FBgn0026620 FBtr0089955,FBtr0089953,FBtr0089952,FBtr0089954 1 4 7 82 3R 570241 570259 AAAGTTTGGAGGTCTTCCC 59 569896 570197 TCAGTTGAGTATCCATATCGG 58 NA Drosophila melanogaster 50 CR34262 FBgn0085291 FBtr0112457 3 1 1 103 3L 21953026 21953044 GATCTTTCCCACAAACGTG 59 21953111 21953190 AATACTTGGCCAGTAGAGG 58 NA Nonspecific Drosophila melanogaster 50 CG32453 FBgn0052453 FBtr0078521 1 1 1 69 3L 22690358 22690376 ATTCGCTCTACTTCTCAGC 59 22690409 22690427 TGTAGATGTGCTGCTACTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7172 FBgn0037102 FBtr0078377 1 1 1 60 3L 21561688 21561706 CGAGAAGTACCAGAGACAG 58 21561646 21561664 CTTGGGATTCACATTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mkrn1 FBgn0029152 FBtr0078383,FBtr0078384 2 2 2 69 3L 21524869 21524890 CAGAGCCAGAATGAAATAATCG 59 21524637 21524656 GATAATCTCGCCGATCTACG 59 NA DesignNoJunction Drosophila melanogaster 50 skd FBgn0003415 FBtr0078328,FBtr0112830,FBtr0078329 3 3 3 80 3L 20989472 20989491 TCTAACATTCGAGGAAGAGG 58 20989352 20989429 CTGTCCATATGAGTGTCCC 59 NA Drosophila melanogaster 50 CG12984 FBgn0037042 FBtr0078286 2 1 1 61 3L 20985086 20985104 GGTATCAGGGACAACACTG 59 20985126 20985147 GTTTCATCGTCCAAGAATATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13253 FBgn0037015 FBtr0113182,FBtr0113183 3 2 2 65 3L 20706706 20706793 CAAGAACCTAGAGGACTGC 59 20706659 20706678 TCATCGAATTCCTGTTCGAG 59 NA DesignRelaxed Drosophila melanogaster 50 Deaf1 FBgn0013799 FBtr0100666,FBtr0074882 2 2 2 220 3L 19812918 19812936 AAGTACAAGGACAAGTGGC 59 19821426 19821444 GGTGTAAAGAGACGGACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8765 FBgn0036900 FBtr0089598,FBtr0089597 3 2 2 123 3L 19678982 19679066 AGAAGTCGGTGAAACAGTG 59 19678877 19678897 GAATTATAGTGCTTCCAACGC 59 NA Drosophila melanogaster 50 CG32206 FBgn0052206 FBtr0089795,FBtr0089796 2 2 2 83 3L 19374588 19378509 GACATTGTGCAGATTATCTTCG 59 19374526 19374544 TTCGTAACCATCCACATCC 59 NA Drosophila melanogaster 50 fz2 FBgn0016797 FBtr0112890,FBtr0075028 1 2 3 218 3L 19153742 19153760 AATCAACCAGATAGCAGCA 58 19139397 19139415 TTAGCTTAGTTCGGTTGTG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14082 FBgn0036851 FBtr0075031,FBtr0114620 3 2 2 178 3L 19101292 19101310 CTGTACTGTGATACCCTGC 59 19101132 19101150 GACAAATTGGGTGATCCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7842 FBgn0036691 FBtr0075278 3 1 1 85 3L 17029623 17029641 CACTCCTCTAATGCAAAGC 58 17029690 17029708 AGTACACTCTAATGACGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lasp FBgn0063485 FBtr0100145 1 1 2 119 3L 16674000 16674018 CAAACAGAACACGAAGCAC 59 16673020 16673918 TATTCCGATTCATTGCTGCT 59 NA Drosophila melanogaster 50 CG18814 FBgn0042137 FBtr0075385 2 1 1 114 3L 16363479 16363498 TAGTGAACATTTCCTCGGTG 59 16363575 16363648 TAATGGATGGGACTAGCCA 59 NA Drosophila melanogaster 50 CG4998 FBgn0036612 FBtr0075377 3 1 2 148 3L 16335187 16335205 CAATGCTACCACTACTGCT 59 16336894 16336912 GGTTTCCATAATAGGCACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4962 FBgn0036597 FBtr0075471 2 1 1 70 3L 16288358 16288376 CCGATCATCAAGAGCTACG 59 16288306 16288324 TTGTAGGTGTTGGCATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5027 FBgn0036579 FBtr0075457 2 1 1 166 3L 16222732 16222807 AAGGAGTTCAAGGTTCGTG 59 16222936 16222955 TTTAGCATGTCCACACTCTC 59 NA Drosophila melanogaster 50 CG32150 FBgn0052150 FBtr0075535 3 1 2 104 3L 15832750 15832951 GCAATAATCCGAAAGATGGC 59 15832665 15832683 CATAGCACCGCTCTATTCC 59 NA Drosophila melanogaster 50 Dcp2 FBgn0036534 FBtr0100528,FBtr0075539,FBtr0075538 2 3 4 86 3L 15815230 15815248 GGTACTGTATCCTCGAAGC 59 15815103 15815181 GCTGACAATCTTCTCATTGC 59 NA Drosophila melanogaster 50 Tfb2 FBgn0036513 FBtr0075595 1 1 1 60 3L 15572245 15572263 GGGAATTAGAGCGAAATCG 58 15572203 15572222 GAGAGGAACTGATTGTACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16979 FBgn0036512 FBtr0075563 2 1 1 60 3L 15571018 15571036 TGCTAAATACCCACATCGG 59 15571059 15571078 ACTAAGTACTCTTTGCCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7427 FBgn0036510 FBtr0075561 3 1 1 62 3L 15557501 15557519 ATCCGGAGTACTATTACCG 57 15557545 15557563 GATAGCGCATGAATAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33985 FBgn0053985 FBtr0100030 1 1 1 60 3L 15519473 15519494 GCCTGCTATAGAGATTATTGTG 58 15519434 15519454 GATACGACTCTGATTATCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12355 FBgn0040805 FBtr0075606,FBtr0113333 2 2 2 176 3L 15486579 15486599 ACGCCTTATCTATTGACTGTG 59 15486285 15486303 ATAGATGACACGGAATCGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13457 FBgn0036482 FBtr0075654,FBtr0075653 1 2 2 76 3L 15121463 15121481 TTATACGGGACCTAGCTCC 59 15121300 15121318 CATCATCGTAGGTGGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17177 FBgn0036440 FBtr0075710 2 1 1 60 3L 14692257 14692278 TCACTGCTACTTGTGATATCTG 59 14692218 14692236 TATTTCCGTAGTCATGCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hml FBgn0029167 FBtr0075753 3 1 1 80 3L 13839971 13839989 GTCGTCGATAAGGAGAACG 59 13840033 13840131 GTATCGTGCACTAACTGCT 59 NA Drosophila melanogaster 50 CG10154 FBgn0036361 FBtr0075854 3 1 1 100 3L 13429170 13429330 TAACTGCACGATTGATGCT 59 13429088 13429107 AGAAGTGAGTTCCCATAAGG 58 NA Drosophila melanogaster 50 Ptp69D FBgn0014007 FBtr0075914 2 1 2 149 3L 12731787 12731878 CTAAGAGATTCTTTGAGGGCA 59 12731989 12732007 GTCAGTGTCCTTATGTCGG 59 NA Drosophila melanogaster 50 CG5620 FBgn0036268 FBtr0076012,FBtr0076013 2 2 2 86 3L 12208895 12209529 AAAGCAAATAGAGGTGCCA 59 12208827 12208845 GTTTGTCCTTTGACCAGGA 59 NA Drosophila melanogaster 50 thoc6 FBgn0036263 FBtr0076019 2 1 1 153 3L 12185711 12185730 AAGTTGCATATCCTCAAGGA 58 12185508 12185595 GAATATGCTCGGTTTCCCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 nol FBgn0014368 FBtr0076214 3 1 1 181 3L 11124057 11124075 ACTGATCCGACTACTCCTC 59 11124220 11124238 CTTCCTTTCTTGGAGGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mnf FBgn0036134 FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228 3 5 5 145 3L 11108508 11108591 CAGTACAGTAGTGGCAGTC 59 11108381 11108399 ACATGGTTCCTCTTTAGCG 59 NA Drosophila melanogaster 50 CG32062 FBgn0052062 FBtr0113420 2 1 5 127 3L 10575215 10580743 GGAGTGTATACTATGATCCCT 57 10580986 10582464 AGCAGTGGCATTTAATATGG 58 NA Drosophila melanogaster 50 CG32043 FBgn0052043 FBtr0114368 1 1 4 94 3L 9463530 9463670 ACGGAAATCTACACGAAGG 59 9463728 9463746 AGATTCCACTTACCAGCTG 58 NA Drosophila melanogaster 50 TrpA1 FBgn0035934 FBtr0113155 1 1 2 147 3L 8890172 8890190 AATTGCAAGAAGGACTCGA 59 8889438 8889633 TTACCATGGTGTTCACCAC 59 NA Drosophila melanogaster 50 CG13311 FBgn0035929 FBtr0076589 1 1 1 60 3L 8795040 8795059 TGAATGAAACGCACTATAGC 58 8794999 8795017 CACTGAAGGACCTGATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13667 FBgn0035890 FBtr0076610,FBtr0076611 2 2 2 60 3L 8399338 8399356 CGATGTACTCGATGTTCAG 57 8399380 8399398 AAGGTCGAAGAATGTTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7942 FBgn0035838 FBtr0076686 2 1 2 108 3L 8115189 8115207 GTACCTGGATATGTGCTCC 59 8115334 8115352 CTCCTGCAGGTAATTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33275 FBgn0035802 FBtr0089850 3 1 3 182 3L 7596896 7596915 ACATTTATCCCGTCTACTGG 58 7597060 7609223 GATGCCATAACCAGGACTC 59 NA Drosophila melanogaster 50 msl-3 FBgn0002775 FBtr0076926 2 1 2 192 3L 7118286 7118421 GGTGCTAAACGTCTTTGAG 58 7118046 7118130 GTAGTCACCACGAATTTGC 59 NA Drosophila melanogaster 50 CG8647 FBgn0035729 FBtr0076902 3 1 1 70 3L 7006275 7006293 CAATACCACTCTGGTCACC 59 7006326 7006345 GGCCAATATACAGAGTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 G-ialpha65A FBgn0001104 FBtr0076934 3 1 1 86 3L 6966749 6966767 TGTTCCTCAACAAGAAGGA 58 6966625 6966699 TGTTGGTTCCTGTGTACTC 59 NA Drosophila melanogaster 50 Pole2 FBgn0035644 FBtr0077081 2 1 1 60 3L 5890460 5890478 TGGATGTGGATTTACTGCC 59 5890418 5890437 AATCCACATAGCTTGAAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sucb FBgn0029118 FBtr0077135 3 1 2 177 3L 5556421 5556439 GTATGGAGTGGCCATACAG 59 5556181 5556200 ATACTTGGTGGTGATATGGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG34391 FBgn0085420 FBtr0112634 3 1 1 80 3L 5430868 5432302 CAGGGAGAACAATATCATACC 57 5432344 5432362 TTCTTCATGGCATATCCCA 58 NA Drosophila melanogaster 50 CG7509 FBgn0035575 FBtr0073362 2 1 1 99 3L 4803911 4803985 CGGATAAGTCATATAGATGGC 57 4803832 4803850 ATAGATCAGCTGGAATGCT 58 NA Drosophila melanogaster 50 CG32244 FBgn0052244 FBtr0073325,FBtr0073324 3 2 2 104 3L 4505470 4505488 TGCTATCTTCTCAACAGCG 59 4505293 4505402 CAAACATCATGCGAACCTG 59 NA Drosophila melanogaster 50 DopEcR FBgn0035538 FBtr0100185 2 1 3 192 3L 4379581 4379933 CAATTCTTGCCTGTTGCAG 59 4371891 4379425 CTAATTGTGCGCATCTGAG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 ago FBgn0041171 FBtr0073246,FBtr0073247,FBtr0073245 1 3 3 99 3L 4247723 4247741 AATTGTGGGACGTTAAGAC 57 4247576 4247660 GTGTCGTTTGCTCTAATCC 58 NA Drosophila melanogaster 50 CG11593 FBgn0035488 FBtr0114509 2 1 1 83 3L 4038740 4038821 CTTAAACGGTGTTATCAGCTG 59 4038677 4038695 TATCCAGAATGTCGGATGC 59 NA Drosophila melanogaster 50 enc FBgn0004875 FBtr0073153 1 1 4 228 3L 3832330 3832348 TATCACTATGAGCCCAGAG 57 3832540 3832616 CTGATTGATGAAAGACGCG 59 NA DesignRelaxed Drosophila melanogaster 50 PHGPx FBgn0035438 FBtr0073068,FBtr0073066,FBtr0073067 3 3 4 214 3L 3328064 3328082 CTGGTGATCCTCAACTTCC 59 3328326 3328345 GTGAAGTTCCACTTGATTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG12016 FBgn0035436 FBtr0073063,FBtr0073064 2 2 2 60 3L 3321318 3321337 GGATTCATGATCTTCAACCA 57 3321358 3321378 GGAAGTGGTACTTAATGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1291 FBgn0035401 FBtr0073023 3 1 1 64 3L 3145174 3145192 TTCTCTTTCCAAGCATTCG 58 3145217 3145238 CTGGAGATAGGAACAAGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-pro FBgn0027082 FBtr0072948 1 1 1 69 3L 2650953 2651029 TTTCGTTAAGGTGAATGCC 58 2650902 2650923 CGATACATAATGGTATTCGTGG 58 NA DesignRelaxed Drosophila melanogaster 50 Pxn FBgn0011828 FBtr0072950,FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951 1 5 5 146 3L 2611834 2611853 GAACAATAATCGGCTAAGCC 59 2611549 2611649 TACATGATCAGGCGATTCAG 59 NA Drosophila melanogaster 50 dos FBgn0016794 FBtr0072926,FBtr0072927 3 2 2 94 3L 2594380 2594399 TAACCAATAAACTGGGTGCA 59 2594456 2594530 ATTGCCCAACTTATAGGCA 58 NA Drosophila melanogaster 50 DmsR-2 FBgn0035329 FBtr0113126,FBtr0072885 2 2 2 60 3L 2299266 2299774 AAAGCTGAGTGACCTTATGG 59 2299797 2299815 CAGGATGAAGTTGATGCTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG9018 FBgn0035318 FBtr0072909 1 1 2 194 3L 2236070 2236088 CTGGAGGATAAGGACAAGG 58 2235817 2235835 TGAAGAACGTACATCGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 zormin FBgn0052311 FBtr0110858,FBtr0110856 2 2 4 135 3L 2125346 2125364 ATGTTAGCAGGGAGATCAG 58 2124604 2125249 CATTTGGTTCCGTATTGAGAG 59 NA Drosophila melanogaster 50 CG12025 FBgn0035285 FBtr0072834 1 1 1 60 3L 1867415 1867434 TATCACGTCGTGTACATCTG 59 1867457 1867475 GGTGATAGAAGTCGAACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2211 FBgn0035211 FBtr0072723 3 1 1 192 3L 1333847 1333866 GGAGCGTTCAAATCTTACTC 58 1333618 1333693 GGGAATGTAATCAAGATGCA 57 NA Drosophila melanogaster 50 CG9153 FBgn0035207 FBtr0072671,FBtr0072670 3 2 2 89 3L 1317536 1317555 GTGGGAAATGAGGATTACGA 59 1317604 1317680 CCATTTGATTGTATCATCGACC 59 NA Drosophila melanogaster 50 CG33965 FBgn0053965 FBtr0100006 1 1 1 81 3L 1233637 1233710 AATCAAGGAGAGGGTTTCC 58 1233753 1233773 GTACTCCTCAGGAAGATAGTG 58 NA Drosophila melanogaster 50 bab1 FBgn0004870 FBtr0072643 3 1 2 64 3L 1099101 1099119 GATCCGAGAGGAAGAAAGG 59 1079627 1079646 GTTATGTACTTACGTTGGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Glut1 FBgn0025593 FBtr0112911,FBtr0072617,FBtr0072616,FBtr0112909 3 4 6 81 3L 982228 982246 CCTGCATCTCTATGGTCTG 59 982289 983866 GTCGATCATTTCCTTGATCAG 58 NA Drosophila melanogaster 50 CkIIalpha-i3 FBgn0025676 FBtr0072604,FBtr0072603 2 2 2 80 3L 709486 709566 TGTAAGCTTGCAACAAAGC 59 709424 709442 GGACGATTCTTAGTCAGCT 58 NA Drosophila melanogaster 50 5SrRNA:CR33385 FBgn0053385 FBtr0086377 1 1 1 62 2R 15641896 15641914 AATACATCGGTTCTCGTCC 59 15641852 15641870 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30424 FBgn0050424 FBtr0113375,FBtr0113377,FBtr0113376 1 3 3 97 2R 20853307 20853382 ACTTCGGGAATTCAGTCAC 59 20853228 20853246 TTGAAGTGGTCTTCAGTCC 59 NA Drosophila melanogaster 50 CG13588 FBgn0035038 FBtr0072319 2 1 1 127 2R 20496801 20496882 CTACAACCCGAATAAGAATGAC 58 20496968 20496988 CGTCATCTAGAATGCTAATGG 58 NA Drosophila melanogaster 50 CG13581 FBgn0035014 FBtr0072300 3 1 1 66 2R 20394520 20394538 TAAGGCCATCTATTTCCGC 59 20394568 20394586 GAAGCTGGAGAAGTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nop60B FBgn0023184 FBtr0072258,FBtr0100213 2 2 2 235 2R 20064130 20064148 ATCAAGCGAGTGATCATGG 59 20064347 20064426 CTTAACTTGCGTTTGCTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13565 FBgn0034935 FBtr0072209 2 1 1 122 2R 19835170 19835888 ATATCTTTGTGAAGCTGGCT 59 19834792 19834810 TACTTCGTCTTGAACTCCG 59 NA Drosophila melanogaster 50 CG11299 FBgn0034897 FBtr0113114,FBtr0113113,FBtr0072087 3 3 3 112 2R 19619396 19619414 CATTTACCAGGACTTTGCC 58 19619490 19619573 CATCGTTGTACAATCCGTC 58 NA Drosophila melanogaster 50 Pde8 FBgn0034886 FBtr0072075 1 1 5 180 2R 19563345 19563363 AGATGGACTTCATAGCCAC 58 19563505 19564584 GCCGAACAATTCTCTTTAGTG 59 NA Drosophila melanogaster 50 retn FBgn0004795 FBtr0072072,FBtr0072073 3 2 2 98 2R 19538521 19538539 TATCAACAAGAAGCTGTGG 57 19538601 19538969 TACTTCATGTATTGGGTGC 57 NA Drosophila melanogaster 50 eIF2B-delta FBgn0034858 FBtr0072014,FBtr0072015,FBtr0072013 1 3 3 76 2R 19275710 19275728 CAAGAACCAACTGACACAG 58 19275824 19275842 TATCGATGAAGTGGACGAG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG3800 FBgn0034802 FBtr0071994 3 1 1 138 2R 18823623 18823641 GACACATCTCCAAGAACTG 57 18823503 18823521 TACATTTATGAGGTGCCAC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Oatp58Dc FBgn0034716 FBtr0113105,FBtr0071777 2 2 2 81 2R 18113473 18113491 TCGCTATACTACACGTTGG 58 18112904 18113429 ATGAAAGACTCAACAAAGCC 58 NA Drosophila melanogaster 50 lox2 FBgn0034660 FBtr0071745 3 1 1 88 2R 17677625 17677643 GCATCTTTCTGTTTGGAGG 58 17677500 17677573 ATGGAAATGCCCTGATCTC 59 NA Drosophila melanogaster 50 CG9143 FBgn0034496 FBtr0086304 2 1 1 155 2R 16163906 16163986 CTACAATGACGAATCTGGC 58 16163769 16163787 CTGTTGGGATACTTGAAGC 58 NA Drosophila melanogaster 50 Obp56d FBgn0034470 FBtr0086477 1 1 1 60 2R 15591018 15591036 AAACGGCAATTTCGATGAC 59 15590976 15590994 CTCCAAGAAACAATTGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp56c FBgn0046879 FBtr0086478 2 1 2 80 2R 15588127 15588147 GCGACTACAATAATGACAACG 59 15587986 15588004 TCTCATACAGACAGCTCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15124 FBgn0034461 FBtr0086470 1 1 1 60 2R 15530548 15530566 TAACGACAATATGCTCGAC 57 15530589 15530608 AGTTATGTTCGGTAAGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494 3 7 7 68 2R 15418201 15419688 TATTGAGGGTAAAGGCACC 58 15418151 15418169 TTCATGCTCTTGGATGAGG 59 NA DesignRelaxed Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494 2 7 7 152 2R 15418202 15419689 CTATTGAGGGTAAAGGCAC 57 15418068 15418087 CTCAATTGTAGATGTCCACC 57 NA Drosophila melanogaster 50 CG30127 FBgn0050127 FBtr0086556 3 1 1 102 2R 15216060 15216078 GACCGATGCACAATATGAC 58 15215762 15215780 TCAGTGGACGTGTTAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 Jheh2 FBgn0034405 FBtr0089970 1 1 2 127 2R 14744417 14744435 TCTTCGAGGTTATTGCACC 59 14744116 14744134 CTTATCGAATCCCACTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)03709 FBgn0010551 FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616 1 6 6 191 2R 14707870 14707888 GATGATCAACATCTCGCTG 58 14708043 14708123 ATGAGTAGGGATACCTGCT 59 NA Drosophila melanogaster 50 CG15068 FBgn0040733 FBtr0086727 1 1 1 60 2R 14277927 14277946 ATGTGATTATAAACGGCGAC 58 14277886 14277905 ATTTCCACATTCTAATCGCC 58 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 sbb FBgn0010575 FBtr0086765 1 1 3 84 2R 14170886 14170904 AACTAATGGGTGGATTGCC 59 14170734 14170838 AGTACACCCGCTTTAAGTG 59 NA Drosophila melanogaster 50 CG6435 FBgn0034165 FBtr0087045 1 1 1 211 2R 12761771 12761789 TTGCCTAGACTGTCTATGC 58 12762020 12762039 ACATATAATTCTGCACCGTG 58 NA DesignNoJunction Drosophila melanogaster 50 Nox FBgn0085428 FBtr0112650 1 1 1 80 2R 12202783 12202801 GATCAACTGGTAGCTCCAC 59 12202843 12202953 GGCCATCGATAAATATCTCCA 59 NA Drosophila melanogaster 50 CG15701 FBgn0034095 FBtr0087131 3 1 1 156 2R 12120368 12120476 TACAAGGAAGTTCAGTACGC 59 12120594 12120613 GATAGCTCCTCAGATCACAG 59 NA Drosophila melanogaster 50 CG8435 FBgn0034084 FBtr0087249 3 1 1 169 2R 12057719 12057738 CAGTGGACTACAACACTCTG 59 12057509 12057530 CTTGATCTCCTCAATGATTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 Asph FBgn0034075 FBtr0087218,FBtr0087221 2 2 4 89 2R 12000754 12001291 CCAAATACAACTGAGGATGAG 58 12001342 12001360 ATCATCCGGTATGTGATCC 58 NA Drosophila melanogaster 50 Asph FBgn0034075 FBtr0087220,FBtr0087219 3 2 4 273 2R 12000137 12000155 AAGAATCAGTAGAGCCGGA 59 12000466 12002286 GGCTTTATTTGTGATGCCA 58 NA DesignRelaxed Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 1 5 7 80 2R 11836644 11836723 CATTTGCTACGTGCTACTC 58 11836582 11836603 GCTCTAGTTATATTCGAGAAGG 57 NA Drosophila melanogaster 50 CG34123 FBgn0083959 FBtr0114580,FBtr0110832,FBtr0114579,FBtr0110831,FBtr0110833,FBtr0113485 3 6 6 80 2R 11165813 11166764 GAACAAGAATCTGATTACCGTC 59 11165754 11165773 GTTAGGATGGTCTGATCCAG 59 NA Drosophila melanogaster 50 CG8093 FBgn0033999 FBtr0087401 2 1 1 60 2R 11102560 11102580 GTCCTTTACTGGACAAATGTG 59 11102520 11102538 ATGTGGTTCCTTGAGAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13340 FBgn0033868 FBtr0087649 2 1 1 61 2R 9666285 9666303 GACAGAAGACGTATCTGCC 59 9666242 9666260 CTTCACTCCCGTGTTAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6016 FBgn0033844 FBtr0087700 1 1 2 80 2R 9378988 9379008 GCTCAGTTCTCAATTATAGCC 58 9377367 9378946 CACGATTGGTATCTTGGTG 58 NA Drosophila melanogaster 50 CG34439 FBgn0085468 FBtr0112740 1 1 2 85 2R 9046597 9047045 TACAAGATGAACGGTCTGG 58 9047094 9047112 GCACTTAAGCTTAAACGGA 58 NA InUTR Drosophila melanogaster 50 CG8632 FBgn0033762 FBtr0087844 2 1 2 98 2R 8541556 8541626 CCAGCAGATCTATGACTCC 58 8541688 8541706 TTGTCGAGCATTACTTTGG 58 NA Drosophila melanogaster 50 Cpr49Ab FBgn0050042 FBtr0087914 2 1 1 98 2R 8266534 8266606 CACTATCTTTGGGAAACTGAG 58 8266666 8266684 GTAGAATCCCTTGGAACGA 58 NA Drosophila melanogaster 50 garz FBgn0033714 FBtr0087898,FBtr0087897 1 2 2 80 2R 8216834 8216852 AATTTGCGTGGTCTAAACG 59 8216896 8216978 CTCTTCGTTCTTGATTGCA 58 NA Drosophila melanogaster 50 CG8858 FBgn0033698 FBtr0088008 2 1 1 123 2R 8083928 8084002 CAAGAGAAGTGAATCCAATCTC 58 8083826 8083847 CTCCGATACATCTTTCAAAGTG 59 NA Drosophila melanogaster 50 E(Pc) FBgn0000581 FBtr0088139,FBtr0088140 2 2 2 93 2R 7344228 7344316 GTTTACCTACCGACTCGAC 59 7344373 7344391 ATTTAGCATCCGAACAAGC 58 NA Drosophila melanogaster 50 trsn FBgn0033528 FBtr0088306 2 1 1 80 2R 6367095 6367176 GCAGTACTACAGATACTCCG 59 6367034 6367053 TCCAGGTAAATAACCAAGGC 59 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 1 9 9 149 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349137 6349157 GACAGCATCGAATACAAACTG 59 NA Drosophila melanogaster 50 CG34222 FBgn0085251 FBtr0112415 2 1 1 142 2R 6207801 6207819 TAGACAGAAATGCCGATCC 59 6207677 6207695 TGAAATAGCCGTTATTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CAP FBgn0033504 FBtr0088342,FBtr0088347,FBtr0088341,FBtr0088338,FBtr0088340,FBtr0088343,FBtr0088339 2 7 10 83 2R 6182437 6182455 GTCATTCGTCTGTTTCCGA 59 6182825 6183262 TCGATTGTTCTAGATTCCCG 59 NA Drosophila melanogaster 50 CG2264 FBgn0033478 FBtr0088400,FBtr0088399,FBtr0088401,FBtr0088402 1 4 5 152 2R 5948857 5949128 GAGTTTCACAACCGTAGTG 58 5949244 5949262 GTGTGGATTAACTCCAGTG 57 NA Drosophila melanogaster 50 CG12128 FBgn0033473 FBtr0088393,FBtr0088394 3 2 2 60 2R 5914623 5914641 AAGGATAAGCCTAATCCGT 57 5914664 5914683 CATTCTCGAGAATTGAACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8029 FBgn0033393 FBtr0088587,FBtr0088588 3 2 2 242 2R 5095662 5095680 CAAGACCTACTACACCAGC 59 5095958 5095976 TACAGATAAGCCACCTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 ltd FBgn0002567 FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934 1 5 5 108 2R 5066192 5066210 GGATGAGTATGTGAGGGAG 58 5066041 5066123 GATGAGTATCTTATTCACGAGG 57 NA Drosophila melanogaster 50 ltd FBgn0002567 FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934 2 5 5 110 2R 5066194 5066212 ATGGATGAGTATGTGAGGG 58 5066041 5066123 GATGAGTATCTTATTCACGAGG 57 NA Drosophila melanogaster 50 CG8788 FBgn0028955 FBtr0088581 2 1 1 86 2R 5027791 5028948 ACTTCTACATCATGTGGCG 59 5028997 5029016 CTTTAGACACGGATCAGGAC 59 NA InUTR Drosophila melanogaster 50 sns FBgn0024189 FBtr0111043,FBtr0088635 2 2 2 83 2R 4718008 4718027 CTATCATCTGTGACTCGAGC 59 4718072 4718386 TATTAATGCCTTCGATGGGT 58 NA Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 1 9 9 90 2R 4568146 4568164 AGATCAAGACCTGCTTGTG 59 4568217 4568299 ATATCACGGTAGTCCATGAC 58 NA Drosophila melanogaster 50 CG14763 FBgn0033243 FBtr0088875 1 1 1 80 2R 3854502 3854575 CAACTACGACAGATATCGCT 59 3854441 3854460 AAGTTGACCATGGAGTAGAG 58 NA Drosophila melanogaster 50 CG30497 FBgn0050497 FBtr0088933,FBtr0088934,FBtr0088932 3 3 3 60 2R 3628352 3628370 CTTGCGTAACCATTTCTGG 59 3628310 3628330 ATGCATCAGGTACTGATACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr43a FBgn0041243 FBtr0110820 3 1 2 182 2R 3279335 3279408 TCTTGCAGAGAACAATGCA 59 3279171 3279189 TTGAGGATTAGACTGCGTG 59 NA Drosophila melanogaster 50 Gr43a FBgn0041243 FBtr0089014,FBtr0110820 1 2 2 123 2R 3279490 3279508 TTTACTTCATCCTCACGGG 58 3279330 3279403 CTGGTTGCATTGTTCTCTG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111064,FBtr0111057,FBtr0111100 2 3 60 83 2R 3247002 3247020 CACCTTAAGGGAAAGAGCA 59 3236471 3246958 CTTGTACCATCTAAAGAAAGGC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111080 3 1 60 80 2R 3243664 3243682 GACCGTATAAAGAGCTCGA 58 3236471 3243622 CTTGTACCATCTATAAACCGG 57 NA Drosophila melanogaster 50 coro FBgn0033109 FBtr0086208,FBtr0086209,FBtr0086207 2 3 3 140 2R 2752071 2752154 TTCGGTATTTCGAGGTAACG 59 2751950 2751968 GATAGAACTTGGCGACCTC 59 NA Drosophila melanogaster 50 phtf FBgn0028579 FBtr0086125 2 1 1 80 2R 2630263 2630352 AATAGTTGCATGGTACCAG 57 2630396 2630414 TCCAATATCCTCTGTTCGA 57 NA Drosophila melanogaster 50 Pld FBgn0033075 FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997 2 6 6 80 2R 2141752 2142360 ACATTCAGGGTTACTTGGT 58 2142404 2142422 CCTCCTTACTAGTTCCAGG 58 NA Drosophila melanogaster 50 vlc FBgn0010633 FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039 3 4 4 107 2R 1591797 1591817 CCAGATATCTCCGAAGATACC 58 1591885 1591956 ATTATTGTGGCAAAGACCCT 59 NA Drosophila melanogaster 50 CG30438 FBgn0050438 FBtr0086068,FBtr0086069,FBtr0086070 2 3 4 97 2R 1414858 1414876 GGACATCCTAATGGCTACG 59 1416315 1426767 AGGTAATATTGTGACCTCTGG 58 NA Drosophila melanogaster 50 CG30437 FBgn0050437 FBtr0086065 2 1 3 117 2R 1328563 1341069 TTAGTCGATGAAGTTGTGC 57 1341150 1341168 AGTATTCGGGAGGAATGTC 58 NA Drosophila melanogaster 50 d4 FBgn0033015 FBtr0111115 3 1 3 159 2R 1151493 1182137 AAAGTTTACACTCCCACCA 58 1182338 1182362 GAGTCCTTACTATCATTATCTCCTG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG41448 FBgn0084012 FBtr0111271 2 1 1 93 2R 562785 562803 AGCATACGAGTGAACAAGG 59 562710 562728 GAACTTCTCGACGTATCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snmRNA:158 FBgn0065104 FBtr0091750 1 1 1 60 2L 5206237 5206255 AGGATCACTCTACCCAAGG 59 5206279 5206297 GCTGCTATCCCATCTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33855 FBgn0053855 FBtr0091859 1 1 1 60 2L 21522068 21522087 GGTCAATGGAAAGCTTATCC 58 21522110 21522128 CGACAGTTTGAAAGATCCA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His2A:CG33832 FBgn0053832 FBtr0091836 1 1 1 60 2L 21483508 21483527 GAATTATTCCGCGTCATCTG 59 21483550 21483568 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31626 FBgn0051626 FBtr0081485 2 1 2 83 2L 21236687 21236706 CCCACATTCTTCAAGAAGTG 58 21233882 21233900 TGATCATTAACCCAGAGGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9246 FBgn0032925 FBtr0081472 2 1 1 60 2L 21164019 21164039 AGGAAGATACGGTAACTAAGG 58 21164061 21164079 TTGTGGTACTTCTCTTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10722 FBgn0032848 FBtr0081335,FBtr0081334 1 2 2 194 2L 20095930 20096011 AACTTCAGCGTTACAACGA 59 20096166 20096187 ACTATGTGTACACAATGTACCC 59 NA InUTR Drosophila melanogaster 50 CG10664 FBgn0032833 FBtr0081300,FBtr0081301 1 2 2 130 2L 19959683 19959761 ACATCTTCGTGTACGATGAG 59 19959854 19959872 CTTGTTCTCGTAGTCCCAC 59 NA Drosophila melanogaster 50 CdGAPr FBgn0032821 FBtr0081318 3 1 1 100 2L 19779090 19779109 TTTCATCCAATGTACAGCAG 58 19778938 19779027 GTTGTTGATGTTCTGTCCC 58 NA Drosophila melanogaster 50 fon FBgn0032773 FBtr0081222 2 1 2 128 2L 19385700 19386087 GATTTCCAACAAAGTTTGGG 57 19385285 19385303 AAAGCTACCGCTATAACCT 58 NA Drosophila melanogaster 50 CG17350 FBgn0032772 FBtr0081199 3 1 1 92 2L 19382122 19382206 CAAACGAAAGAGTCCAAGG 58 19382262 19382280 GATTTCGAACGTGATGTCC 58 NA Drosophila melanogaster 50 CG10602 FBgn0032721 FBtr0089314,FBtr0089315,FBtr0089317,FBtr0089316 3 4 4 106 2L 18856840 18856925 CTAAGGGAAGCCTTAACGT 58 18856752 18856771 CATATAAGGATGCTCCTTGC 58 NA Drosophila melanogaster 50 CG15147 FBgn0032654 FBtr0080988 2 1 1 86 2L 17626142 17626162 CCGTTATCGTCAAACTTATCG 59 17626076 17626094 TTAACCCTTGGCTGAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ApepP FBgn0026150 FBtr0080956 1 1 1 60 2L 16909250 16909268 AGTCACGTAGAATTCAGGA 57 16909208 16909226 ACATCGTTCTTAATGGCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31805 FBgn0051805 FBtr0080958 1 1 1 72 2L 16898441 16898459 TACTGATGACTCTCCCGAG 59 16898280 16898298 TAAATGGGCGAGATTGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 mdy FBgn0004797 FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917 1 4 4 86 2L 16820786 16820804 ATAACGCCCTAATCCTGAG 58 16820919 16825419 CAATTATTTCCATGGCTAGACC 59 NA Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080878,FBtr0080876 2 3 7 189 2L 16483963 16483982 GTCTGCATACGGTTTATACC 58 16481537 16483811 TTGATCGATAGGCATCTGG 58 NA Drosophila melanogaster 50 CG4455 FBgn0028506 FBtr0080836 1 1 1 60 2L 16353320 16353338 TATCTGGATAGTCGACCCG 59 16353362 16353380 TTACGGTGAAGATGATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13244 FBgn0032577 FBtr0080792 3 1 1 60 2L 15917294 15917313 ATTCTACAACTTTGTCTGCC 58 15917336 15917354 TACTTGTTCAGCATCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18420 FBgn0028866 FBtr0080687 3 1 1 80 2L 14796076 14796162 AATACCACAATCGTTGTTCG 58 14796015 14796034 GGTCCTATTCACTTGATGCT 59 NA Drosophila melanogaster 50 CG18095 FBgn0028872 FBtr0080606 1 1 1 113 2L 14029995 14030015 AATGTAGAGGGAATAGACTGC 58 14029844 14029920 ATAGGCAACAACACAATCG 58 NA Drosophila melanogaster 50 CG16885 FBgn0032538 FBtr0080559 3 1 2 185 2L 13933468 13933486 TCACCTATCCCGTTAAGGT 59 13932840 13932858 TTTGTAAGTCGTACGTTGG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG31845 FBgn0051845 FBtr0080533 1 1 1 138 2L 13777621 13777639 TGCAAACTTTGCGAATCAC 59 13777741 13777759 GAACTCTGTCAGGTAGCAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4970 FBgn0032364 FBtr0080239,FBtr0080240 1 2 2 60 2L 11519078 11519096 GATCATAAGGCAGCATGAC 58 11519177 11519195 AATCGCCTCAATCTCATCG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 mre11 FBgn0020270 FBtr0080213 3 1 1 60 2L 11284098 11284118 GATGTGACAGTCAGTAGTACG 59 11284207 11284225 TAAGGCTACTAAGGAGCGT 59 NA DesignNoJunction Drosophila melanogaster 50 RfC3 FBgn0032244 FBtr0080019 3 1 1 130 2L 10420337 10420410 TTATGAGACTTGAGCTGCC 59 10420504 10420522 AATAAAGAAGGCGGCTACC 59 NA Drosophila melanogaster 50 Cdk5alpha FBgn0027491 FBtr0080063 3 1 1 89 2L 10308594 10308615 GGCAATGAAATCAGTTATCCAC 59 10308454 10308472 CTTGTTCACAATGACGAGG 58 NA DesignNoJunction Drosophila melanogaster 50 Pka-C1 FBgn0000273 FBtr0079851,FBtr0079852 1 2 3 112 2L 9685193 9696199 TACATCAGCCATTTCCCTC 59 9685099 9685118 TTCAAATCGTCTTCCAAGTC 58 NA InUTR Drosophila melanogaster 50 CG12438 FBgn0032065 FBtr0079732 3 1 1 60 2L 8752954 8752972 CATCAGCTTCGAGTACCTG 59 8752995 8753014 GATATAGAGCACTATGGCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9314 FBgn0032061 FBtr0079731 1 1 1 60 2L 8706229 8706248 ATGTTCTGGGACTTCATGAC 59 8706271 8706289 TAAAGTACATGAGCAGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hnf4 FBgn0004914 FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846 1 4 4 99 2L 8688854 8688935 TCTTCTTCGATCCCAATGC 59 8688773 8688793 CGATCTGATATGTAGTCCTCG 59 NA Drosophila melanogaster 50 Glt FBgn0001114 FBtr0079727,FBtr0079726,FBtr0079725 2 3 3 280 2L 8674101 8674119 ACCATCCATTAACCCATCC 59 8674363 8674774 GATCATAGATTCGCGACAC 58 NA DesignRelaxed Drosophila melanogaster 50 Aats-ala FBgn0027094 FBtr0079721 3 1 2 257 2L 8380660 8380682 GATCTAACTACGATACCGATCTG 59 8380302 8380320 CATTCAACTTCTCAGTGGC 58 NA DesignNoJunction Drosophila melanogaster 50 Snoo FBgn0085450 FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718,FBtr0112720 3 5 5 61 2L 7975349 7975367 AGTTCGAGAATCACACCTG 59 7975306 7975324 ATGAAGATAGTCGTGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myo28B1 FBgn0040299 FBtr0079474,FBtr0079476,FBtr0079475,FBtr0079473 1 4 4 80 2L 7682041 7682116 TGGGACATATCTTCAAGATGG 59 7682155 7682176 GATTATCCTGGAACTCAATGTG 58 NA Drosophila melanogaster 50 Gr28a FBgn0041247 FBtr0079463 1 1 1 139 2L 7452809 7452827 CCAGAACTCAGAGATCGAC 59 7452629 7452647 ATAATGAGGTAGCACGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13779 FBgn0040954 FBtr0079403 1 1 1 139 2L 7064272 7064290 CGAGGAAGAGCTAAATGTG 57 7064393 7064411 GTTAGGACTGAACAAAGGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 homer FBgn0025777 FBtr0079307,FBtr0079306,FBtr0110778 1 3 3 101 2L 6721445 6721527 TGCTCTTCAGGAATCAACTG 59 6721363 6721381 CACAGCTGCTCCATATCTC 59 NA Drosophila melanogaster 50 Kr-h1 FBgn0028420 FBtr0079194,FBtr0079195 3 2 2 119 2L 6095045 6095063 CTAACTACGATGACACCCA 58 6095144 6095248 GTAGAGCGGATTCATATTTGG 58 NA Drosophila melanogaster 50 Gpdh FBgn0001128 FBtr0079147,FBtr0079148,FBtr0079146 1 3 3 105 2L 5947159 5947245 GTCTGGAGGACAAATTCCC 59 5947314 5947332 ATATGCTCAGGGTGATTGC 59 NA Drosophila melanogaster 50 CG31915 FBgn0051915 FBtr0079099 1 1 1 60 2L 5529231 5529251 CATTATGGTCAATGAACTCGG 59 5529271 5529291 CTCCAAATGCTTGTAGTAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14023 FBgn0031698 FBtr0113022,FBtr0079081 1 2 2 154 2L 5323469 5323487 AGCAACATCAGCAAATGTC 59 5323216 5323351 GTTGTTGAAGCAATCAGGC 59 NA Nonspecific Drosophila melanogaster 50 Bsg25D FBgn0000228 FBtr0079085,FBtr0079084 2 2 3 99 2L 5274074 5274092 GATTCCAAGGATGAAGCCA 59 5273565 5273583 ATGTTTCCGAAGTGGTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Bsg25D FBgn0000228 FBtr0079083 2 1 3 145 2L 5275753 5276943 GAGTTCAGCAATTGGAGAC 58 5275626 5275644 CAATGCCTTAGTTAGCTGC 58 NA Drosophila melanogaster 50 qtc FBgn0028572 FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260 3 5 7 122 2L 5068375 5068393 ACGAGTTGGAGAACATACG 59 5069211 5070106 GATAAATGGTCTTACGCGC 59 NA Drosophila melanogaster 50 CG17612 FBgn0031597 FBtr0077464,FBtr0077463 1 2 2 60 2L 4381618 4381636 GTCTTGAAGCCCATATGTG 58 4381576 4381594 GGCTCCAACTCTGATTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34176 FBgn0085205 FBtr0112367 2 1 1 196 2L 4004180 4004199 GACCCGTGATTAAGGTACAG 59 4004358 4004376 CTGTGGATTGTGGTAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31686 FBgn0051686 FBtr0077752 2 1 1 60 2L 2244994 2245012 ACAGTACCTTCATCTTCGT 57 2245034 2245054 TGAATGCCTTAGAAGTCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aop FBgn0000097 FBtr0077851,FBtr0077850 1 2 2 124 2L 2159242 2159326 CTGAGCCCAATACAAATGG 58 2159136 2159154 GACGATCTTGAAGACTCCC 59 NA Drosophila melanogaster 50 CG18132 FBgn0031345 FBtr0077919 3 1 1 60 2L 1517316 1517335 CAAATTTGAGTGTGAAGGCA 59 1517275 1517293 AGCTTAAGTATCGTGCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 S FBgn0003310 FBtr0077993,FBtr0077994 1 2 2 111 2L 1052484 1052575 TCCCAAAGAGATTACCATACAC 59 1052394 1052412 CATGATTGTGTAGAGCGGA 59 NA Drosophila melanogaster 50 CG15824 FBgn0031292 FBtr0078029 3 1 1 92 2L 884175 884265 GATACAGAAACACCAATCGTG 59 884103 884121 GCTGTATAACCAGCAGGAG 59 NA Drosophila melanogaster 50 PNUTS FBgn0053526 FBtr0091486,FBtr0091489,FBtr0091487,FBtr0091488 3 4 4 65 2L 872029 872047 AACTCAGCACCTATTCTGG 58 872076 872221 TAGAATGCGTACACCTTCG 59 NA DesignRelaxed Drosophila melanogaster 50 dbe FBgn0020305 FBtr0078030 3 1 1 67 2L 869541 869559 AGCTAGATTTGATGGAGGG 58 869492 869510 GATGATGTAGGGATCCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13694 FBgn0031219 FBtr0078160 1 1 1 60 2L 116000 116020 GCTATAACTACTACACAGCTC 57 115960 115979 TTTGAATTCTCATCACCGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-1854b FBgn0083041 FBtr0113569 3 1 1 63 X 17039686 17039704 TGATCCTTACAGGGTTGTG 58 17039641 17039661 AGAGGAATAGCTAATCATGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12446 FBgn0031201 FBtr0077343 1 1 1 60 X 22212379 22212397 ACTTTCCGTTGAGCTACTG 59 22212337 22212355 TATGTTAAGGAGGGTGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077207,FBtr0077204,FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077206,FBtr0077210 2 8 8 103 X 21253980 21254060 CAACACGATTGTAAAGGCTG 59 21254126 21254144 TCATTTCCAGGGTGATACG 59 NA Drosophila melanogaster 50 shakB FBgn0085387 FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572 3 5 5 82 X 20644231 20644250 AACGCTAATATACAGGGTGG 59 20643790 20644186 GACGCACTAACCTAAATCG 58 NA Drosophila melanogaster 50 CG17065 FBgn0031099 FBtr0077340 3 1 1 92 X 20125925 20125944 TCATAGGACTGTCAAGTAGC 58 20125852 20125872 GAATCTTCGGTGTAGAATCCT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9581 FBgn0031093 FBtr0070026 3 1 1 95 X 20063447 20063522 GAGTTCTTGTCACATGCTC 58 20063370 20063389 TAGTAGAAGTCCGAGTTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7453 FBgn0030991 FBtr0074667,FBtr0074666 3 2 2 65 X 19074920 19074939 CACTGATATACACCAGGAGG 58 19074967 19074985 GTACCTGGCTTATCCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp18a1 FBgn0010383 FBtr0074609,FBtr0074610 3 2 2 273 X 18584262 18584280 CTGGTACAGGTGATCATCG 59 18583571 18584025 CATTGAGTTCCACATCCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG6762 FBgn0030876 FBtr0074492 2 1 1 214 X 17751366 17751384 AATCGTAGCGAAATCATCC 57 17751675 17752095 CTGGTTTCGTTCTTAATGGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG4653 FBgn0030776 FBtr0074321 2 1 1 87 X 16598342 16598663 GAGCTACCCAGCTAAATCC 59 16598714 16598732 TATGATCTTGGACAGAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13403 FBgn0030544 FBtr0073928 3 1 1 144 X 14085740 14085912 GAACTCCGTAACCGTACTC 59 14085614 14085632 GTACGATGGATACGAGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PhKgamma FBgn0011754 FBtr0090002,FBtr0090001,FBtr0090000 1 3 3 80 X 11592460 11592544 ATATTTCAGAGGATCCCAAGG 58 11592583 11592604 ATACTTCCTTGACGGTTATACG 59 NA Drosophila melanogaster 50 rho-4 FBgn0030318 FBtr0073518,FBtr0073517,FBtr0073519 3 3 3 82 X 11498697 11498777 TACATTTCCAGGACGATCC 58 11498822 11498841 ATTGTAGATGAACAGGGTGG 59 NA Drosophila melanogaster 50 ran FBgn0020255 FBtr0073471,FBtr0073472 1 2 2 74 X 11040029 11040049 GCAACAAAGTCGATATCAAGG 59 11039897 11039993 ACTGCAAGTTCTTCTTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11190 FBgn0030035 FBtr0071175 1 1 1 95 X 8300893 8300911 TAGTGGTTCGTCCATTGTC 59 8300608 8300836 GGGTGTGGTAAAGATTATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10777 FBgn0029979 FBtr0071132 2 1 1 105 X 7822581 7822836 CAAGATCAAGGTGGAGGAC 59 7822494 7822512 CTTTAGCACTGAATCACGC 59 NA Drosophila melanogaster 50 Pdp FBgn0029958 FBtr0071076 3 1 1 188 X 7627164 7627182 TGTACGAGGCTAGTTTCCT 59 7626888 7626906 CAATGTGAACCAAACAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14443 FBgn0029880 FBtr0070949 1 1 1 60 X 6529653 6529671 GGTAGTCAATGGGCTATCG 59 6529693 6529713 ATCGTAAATAGCAGTCAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32751 FBgn0052751 FBtr0070880 3 1 1 110 X 6091974 6091992 ATCCTGTTCTATACTCCCG 57 6091650 6091900 AATTTGAACAGCTGTGAGG 58 NA Nonspecific Drosophila melanogaster 50 CG32750 FBgn0052750 FBtr0070881 1 1 1 134 X 6089850 6089868 TTCGGTCATTTCATCTGCT 59 6089676 6089752 AAATTGAGAGGCTGTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4064 FBgn0029808 FBtr0070812 2 1 1 60 X 5679371 5679390 AATATGAGACTCACATCGCG 59 5679412 5679507 GTGTTTATCTCCTGAAGGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG16732 FBgn0039086 FBtr0084419 3 1 1 102 3R 19362087 19362159 AGAAATGCTTGAGTCTGACC 59 19362004 19362022 TAGAATGTCATTGGAGGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CSN6 FBgn0028837 FBtr0084265 1 1 1 60 3R 18406944 18406963 GAAACAGTGATCAACAAGGA 58 18406986 18407062 TGAACACCTGCTTGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34376 FBgn0085405 FBtr0112609 2 1 2 223 3R 18283184 18285566 ATGGACATTCCCTCAATCG 59 18285752 18285771 TTGTTGGTCACGATTATGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Bin1 FBgn0024491 FBtr0083279 2 1 1 66 3R 12012468 12012488 GGAATCTATGATTGTGGAGGA 58 12012349 12012440 CATAGGACAGGTCTTCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5013 FBgn0038396 FBtr0083223 3 1 1 183 3R 11875629 11875698 AATACCTGAGCTGCTTCAG 59 11875844 11875863 GTCAGTAAGTACCACTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9799 FBgn0038146 FBtr0082763 3 1 1 156 3R 9212601 9212680 CAAAGGAAAGGTTGACAAGC 59 9212464 9212482 GAACTTGCGAACAATGACC 59 NA DesignRelaxed Drosophila melanogaster 50 yellow-f2 FBgn0038105 FBtr0082722 2 1 1 100 3R 8820032 8820158 AGTATCCAAATAACCGCCA 58 8819950 8819969 TATACTCTCCGGAACATCGA 59 NA Drosophila melanogaster 50 dpr5 FBgn0037908 FBtr0082394 2 1 2 163 3R 7326150 7326859 GTTATAAGTAATTCGAGAGCCC 58 7329149 7329167 AAGTTGGACAATTCCTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15864 FBgn0040528 FBtr0081803 3 1 1 60 3R 4075502 4075681 GAATATACGAATACGCTGGG 57 4075702 4075722 TAATCATCGGGAAGATTGTGG 59 NA DesignRelaxed Drosophila melanogaster 50 Sp7 FBgn0037515 FBtr0081740,FBtr0081742,FBtr0081741,FBtr0081743 2 4 4 88 3R 3588209 3588228 GCAGTTTGATCAACAATCGT 59 3588279 3588366 AACGGTAGTTAGGTGACCT 59 NA Drosophila melanogaster 50 CG34287 FBgn0085316 FBtr0112483 1 1 1 60 3R 1679449 1679467 TGAAGGACTTTGTGAAGGA 58 1679491 1679509 TCATTCCGAGAGTAATCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078808,FBtr0110933,FBtr0078809,FBtr0078810,FBtr0100199 2 11 15 91 3R 1121930 1121951 ACCAGTATTAGTCGAAGAAGAC 59 1121677 1121879 CTATTTCTGCATCTAAGCGC 59 NA Drosophila melanogaster 50 Csp FBgn0004179 FBtr0078495,FBtr0078493,FBtr0078494 2 3 3 83 3L 22262520 22262538 AAGACTTACCGGAAACTCG 59 22262583 22262685 GACTTCCTTGAACTTATCAGC 58 NA Drosophila melanogaster 50 CG7202 FBgn0037086 FBtr0078393 3 1 1 117 3L 21485774 21485793 TAAGTTTCTTGTTCCTGGCT 59 21485287 21485696 TCTGTGTATAATTCGACTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eip78C FBgn0004865 FBtr0078308,FBtr0078307,FBtr0078306 1 3 3 92 3L 21257078 21257157 ACTCTACGATTCTGACTTTGTC 59 21257210 21257228 GAGAAGAGTCCGATTTCGG 59 NA Drosophila melanogaster 50 CG18135 FBgn0036837 FBtr0075044,FBtr0075043,FBtr0075042,FBtr0075045 2 4 4 60 3L 18984754 18984772 ATGATCGAGTTGGATGTCC 59 18984712 18984733 CGAAATCGTGATAAATCACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7304 FBgn0036527 FBtr0075577,FBtr0075576 3 2 2 87 3L 15673900 15673978 AAATCAAGGAACCTGAAACG 58 15674028 15674046 TATTCAGGAGATGTGGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7275 FBgn0036500 FBtr0075547 1 1 1 94 3L 15492986 15493062 GAGGATTGCAACCTTTATACC 58 15493118 15493136 TAGTCAACATCGGTGACAG 59 NA Drosophila melanogaster 50 CG34039 FBgn0054039 FBtr0100094 1 1 1 79 3L 14555383 14555494 ATTAACGAACTGACAAGCG 58 14555537 14555555 ATCTTCAGTTCCAAGGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14110 FBgn0036352 FBtr0075844 3 1 1 149 3L 13377974 13378045 GTTGTTCTCACCATTCAAGC 59 13378155 13378175 GTTGATATAGGCATTACGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32085 FBgn0052085 FBtr0076133 3 1 1 170 3L 11647203 11661303 TTAATATCGTGCACTCCCTG 59 11647052 11647070 CACAGGCGATATACTCGAG 59 NA Drosophila melanogaster 50 simj FBgn0010762 FBtr0076262,FBtr0076264,FBtr0076263 3 3 3 110 3L 10680696 10680777 GAAACAGACCAACAAAGATCC 59 10680848 10680867 TTAACGAATGCCTGTTTCAG 58 NA Drosophila melanogaster 50 CG32066 FBgn0052066 FBtr0076277 2 1 2 278 3L 10640226 10652483 CGAGATACAGATCTATCGGG 58 10639967 10639985 TACTCATCGAACTTCAGCA 58 NA DesignNoJunction Drosophila melanogaster 50 SH3PX1 FBgn0040475 FBtr0076413 2 1 1 83 3L 9704119 9704617 TCGACTTCACATCTACAGG 58 9704054 9704072 TCCTTTCGCTTCTGTATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7979 FBgn0035848 FBtr0076690 1 1 1 61 3L 8174976 8174994 TGTTATGACGAGGGAAAGC 59 8175019 8175324 TTCTCCTGTTTGGCATACG 59 NA DesignNoJunction Drosophila melanogaster 50 Clk FBgn0023076 FBtr0100132,FBtr0100134,FBtr0076785 2 3 3 89 3L 7760034 7760052 CTACACTCATTTGAGACGC 58 7759910 7759982 GTATCGTTACGAAAGTAGCC 58 NA Drosophila melanogaster 50 Gr63a FBgn0035468 FBtr0114512,FBtr0073181 2 2 2 60 3L 3896208 3896226 CGCCTCCTTTATTTACTCG 57 3896091 3896184 CACATAGCCTACATAGCAC 57 NA DesignNoJunction Drosophila melanogaster 50 Pxn FBgn0011828 FBtr0072950,FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951 3 5 5 150 3L 2611834 2611853 GAACAATAATCGGCTAAGCC 59 2611545 2611644 GTTGTACATGATCAGGCGA 59 NA Drosophila melanogaster 50 RabX5 FBgn0035255 FBtr0072804 2 1 1 72 3L 1669611 1669688 TACAGTCTGGAAATGTGGG 58 1669557 1669575 CATTGCGATAATAGGCTCC 58 NA DesignRelaxed Drosophila melanogaster 50 alphaCop FBgn0025725 FBtr0072812,FBtr0072811 1 2 2 61 3L 1643936 1644012 GGTATGGTGGTCTTTAAACTG 58 1643895 1643913 AGAATATTCCCGTGGACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13887 FBgn0035165 FBtr0072583,FBtr0072584 2 2 2 159 3L 838473 838491 TAAACTTGATCTGCACCCA 58 838614 839257 TTGTTGAGCTCGATGAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-1389a FBgn0083046 FBtr0113525 2 1 1 64 2R 17221476 17221495 TAAAGAGATTCCGGCTAAGC 59 17221519 17221540 CTGAAAGTCTACTTTCCAAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wdp FBgn0034718 FBtr0071849,FBtr0071852,FBtr0071851,FBtr0071850 3 4 4 60 2R 18187368 18187386 CGAGGACGACATAGATAGC 59 18187326 18187347 ATTCTCAAGAGGTCTAACATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4386 FBgn0034661 FBtr0071743 1 1 1 149 2R 17687666 17687684 TCATCAAGTTGGATGAGCC 59 17687470 17687554 CCTGAAGAGTATCGGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11110 FBgn0034535 FBtr0086231 3 1 1 157 2R 16529765 16529783 ACAGCAATACCTTTGGACC 59 16529902 16529922 CTAGTTGTAGTAGTTGCTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8929 FBgn0034504 FBtr0086283,FBtr0086285,FBtr0086284 1 3 3 80 2R 16217662 16217743 ACCTGAAGGACTATATCAAGTG 59 16217783 16217802 AGTACTCATAGTAGCGTTCC 58 NA Drosophila melanogaster 50 Jheh3 FBgn0034406 FBtr0086622 2 1 1 300 2R 14748958 14749037 TTCAGGGCTTGAATATTCAC 57 14748609 14748627 ATGAAGAACTTCTTGTGGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG11395 FBgn0034200 FBtr0086987 2 1 1 97 2R 13024825 13024843 TGGCTATGTCACTGATCCT 59 13024904 13024999 GTTCGGATATCCATGTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8388 FBgn0034062 FBtr0087263 2 1 1 77 2R 11897640 11897714 CTTATCCCAGTCAGTATACGA 58 11897583 11897601 AGACATCACAGATCTTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 Obp51a FBgn0043530 FBtr0087420 2 1 1 159 2R 10912208 10912294 ATCCGCTTTATTCGAATCTG 58 10912068 10912086 GAATGGTGTTACCACACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6a9 FBgn0013771 FBtr0087457 2 1 1 77 2R 10767788 10767806 TGGAAAGTACAACGGAGAG 58 10767676 10767747 AGGGTTTCCGATATAACCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-phe FBgn0020766 FBtr0087594 2 1 1 83 2R 9857093 9857181 GATATGGTGGAGCAGATCAG 59 9857227 9857245 ATAAACAATGCGGAAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4712 FBgn0033818 FBtr0087758 1 1 2 114 2R 9137561 9137579 AATCAAATTAGCGATGCCC 58 9136954 9136972 AGTCATTCAAGCTCACACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33007 FBgn0053007 FBtr0087778 3 1 1 60 2R 9035419 9035439 ACACTAACATCTCGTTGTCTC 59 9035379 9035399 CTTTCCTGAGGACTATAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ap FBgn0000099 FBtr0086059,FBtr0086058 3 2 2 102 2R 1595762 1595780 ATGAAGTCCTACTTTGCCA 58 1595602 1595696 GAAACCAGACCTGTAGGAC 59 NA Drosophila melanogaster 50 CG33510 FBgn0053510 FBtr0091450 1 1 1 60 2L 21083637 21083655 AGAAGTGTCTGTTGATCCG 59 21083531 21083613 TGCTAAGACAGCTCTTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2611 FBgn0032871 FBtr0081387 1 1 1 100 2L 20650361 20650382 CGATGGATTCGTTAATGAACAG 59 20650443 20650537 CAATGCCACCGATAAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10188 FBgn0032796 FBtr0081283,FBtr0081282 3 2 2 137 2L 19506345 19507491 AGGTATTTCGACCCATTCG 59 19506226 19506245 GCTATAATTGAGCTCGTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17568 FBgn0032763 FBtr0081233 3 1 1 110 2L 19179979 19180055 GAACTTCGCGTTATGACTC 58 19179887 19179906 ACATTCCTATCTGATGCCAG 59 NA InUTR Drosophila melanogaster 50 CG15134 FBgn0032621 FBtr0080949,FBtr0114502 1 2 2 80 2L 16904393 16904471 CTAAGACAGGGAATCATTGTG 58 16904511 16904531 CTTGTACTGATGCTCAAACAG 59 NA Drosophila melanogaster 50 CG12455 FBgn0028859 FBtr0080823,FBtr0080822 3 2 2 104 2L 16238092 16238165 AGATGATCTGAACTGTGGT 57 16238233 16238251 CTGGAATTCGTTACCTTGG 58 NA Drosophila melanogaster 50 CG4218 FBgn0028881 FBtr0080662 2 1 1 172 2L 14547793 14547883 CAATTTCCAGGACTATGGTC 57 14547640 14547658 CCTAGTAGATGGGCTTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG8292 FBgn0032004 FBtr0079632 1 1 1 98 2L 8217756 8217775 CCAAGTTTACGGATAAGGGT 59 8217615 8217695 GATCGTTATACTGCCACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wg FBgn0004009 FBtr0079433,FBtr0079432 2 2 2 106 2L 7314644 7314662 GATCAGCAAGATCCATCAC 57 7314732 7314881 ATCTATTATGCTTGCGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 tRNA:CR31896 FBgn0051896 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089658,FBtr0089660,FBtr0089662 2 3 7 103 X 17824693 17824711 ATTACTTCTATCACCGCGA 58 17824460 17824626 CAAATGTTGACCTAGTGCA 57 NA Drosophila melanogaster 50 Ucp4A FBgn0030872 FBtr0074464 3 1 1 131 X 17739670 17739688 CTTACATCGTTTCCGTGGT 59 17739780 17740725 GGTATTGCATATTGGACTTTCC 59 NA Drosophila melanogaster 50 kat80 FBgn0040207 FBtr0074247,FBtr0074246 1 2 2 80 X 16168526 16168607 AGTGCTTTATGTCTCTGACG 59 16168465 16168485 CGGAGTAGACAAAGTTATCCT 58 NA Drosophila melanogaster 50 CG16952 FBgn0030701 FBtr0074115,FBtr0074114,FBtr0074116 3 3 3 80 X 15765546 15765902 CAATAGCACAGAAAGATCTGTC 59 15765943 15765961 TTTGGGAACTCCTTGAACC 59 NA InUTR Drosophila melanogaster 50 CG33174 FBgn0053174 FBtr0073825 2 1 2 162 X 13699489 13699507 AAATACGACAGTGGTTGGA 58 13700689 13702412 AAGACACGACCTTCTTGAG 59 NA Drosophila melanogaster 50 CG32627 FBgn0052627 FBtr0073814,FBtr0073815,FBtr0113441,FBtr0073813 3 4 4 131 X 13606925 13607018 CAAAGCCATGATTAGAAGACTG 59 13607110 13607128 GTTAACTTCTTCTCCGGGT 58 NA Drosophila melanogaster 50 CG11146 FBgn0030397 FBtr0073666 2 1 1 78 X 12413264 12413282 AGGACTATTCGCTATCCCT 59 12413142 12413160 ATGTACTGTCCAGTCTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 Klp10A FBgn0030268 FBtr0073478,FBtr0073475,FBtr0073477,FBtr0073476,FBtr0073479 1 5 5 93 X 11027534 11027552 TTGTGACCCTGAATATGCC 59 11027383 11027477 AGAAGATCGAAGACCTTGC 59 NA Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 3 8 9 95 X 10692567 10692660 GAATAAGGGTGAAATTTGCC 57 10692491 10692509 TGCATGATCCGTTTAATGG 58 NA Drosophila melanogaster 50 CG32776 FBgn0052776 FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630 2 4 4 88 X 3791673 3795151 CCTGAGTCTCGATGATGAC 59 3791603 3791623 CGGGATGATCAATAATCTCCA 59 NA Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514 1 9 14 83 X 3215176 3215194 TCTATATCGCTCCGATTCG 58 3215240 3219968 TCTTTAAACCTTTCGCTAGC 58 NA Drosophila melanogaster 50 CG2865 FBgn0023526 FBtr0070408 2 1 1 62 X 2186463 2186481 TGGAGAGGATCAAGGACTC 59 2186419 2186437 AGTAGGTGTTGTTGATGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14798 FBgn0029588 FBtr0089693,FBtr0089694 1 2 2 290 X 1587078 1587096 AAATCGAGCCTCACATCAG 59 1587472 1587490 AAAGTCATGGGATCCTTGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 RpL36 FBgn0002579 FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156 3 4 4 114 X 522710 522792 TTGAAGAACATCCAAACCC 57 522614 522632 TATCCTTGGACACCTTCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CR41604 FBgn0085814 FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269 3 4 4 104 U 3449415 3449487 TTTCTGAAGCAAAGTCCCA 59 3449555 3449573 CTTGATACTGATCTCCCGC 59 NA DesignRelaxed Drosophila melanogaster 50 Dhap-at FBgn0040212 FBtr0084897 1 1 1 90 3R 21312780 21312798 CAATGAATGCTCGCATGTC 59 21312650 21312729 CAAAGGGATCTTTCTTAACGTG 59 NA Drosophila melanogaster 50 CG6454 FBgn0039187 FBtr0084608,FBtr0084609 1 2 2 80 3R 20179238 20179351 ACCATATCTGACGATGTCTG 58 20179391 20179412 CGATACAGATCGATTAAACACC 59 NA Drosophila melanogaster 50 CG6982 FBgn0039014 FBtr0113267,FBtr0113268 3 2 2 134 3R 18555138 18555156 GATTGGTTAATGGCCTCAG 58 18555254 18555342 CTTAATGTAGCCGACATCG 58 NA Nonspecific Drosophila melanogaster 50 cpo FBgn0000363 FBtr0083534,FBtr0083536,FBtr0100377,FBtr0083535,FBtr0083537 3 5 6 176 3R 13793463 13793481 CGCCATAATGGAGAATCAG 58 13832727 13832810 CCTTCATAGCCCTCATAGG 58 NA Drosophila melanogaster 50 CG5013 FBgn0038396 FBtr0083223 1 1 1 60 3R 11875847 11875868 AAGTGGTACTTACTGACAACTG 59 11875889 11875907 CAGGACTTTCGGATATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His4r FBgn0013981 FBtr0082962,FBtr0082963,FBtr0082964 2 3 3 69 3R 10451846 10451864 TAACATCCAGGGTATCACC 58 10451897 10451915 AGAGATACGCTTAACACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pum FBgn0003165 FBtr0081991,FBtr0081992,FBtr0081990 3 3 5 281 3R 5059500 5059518 CATTGTAGGATCTCGAGGT 58 5058565 5059255 CATTTGTCCGGGTTATCGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG2051 FBgn0037376 FBtr0078670,FBtr0078669 2 2 3 80 3R 1613834 1613947 TGTTACTTCTTGAGCTACGA 58 1613773 1613791 GTATACGGTGGTGTAACCA 58 NA Drosophila melanogaster 50 CG12746 FBgn0037341 FBtr0078690,FBtr0078692,FBtr0078689,FBtr0078691 3 4 4 80 3R 1392052 1392070 AAACTCTAATGCGAAGCTC 57 1392114 1392200 GTCTCCAACTTGAAGAAGG 57 NA Drosophila melanogaster 50 CG32452 FBgn0052452 FBtr0078524,FBtr0078523 3 2 2 60 3L 22712450 22712469 CTCCGATAGTTACACTTCAC 57 22712492 22712510 AGGTACTGGATCATCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4365 FBgn0037024 FBtr0078254,FBtr0078253,FBtr0078252 2 3 3 66 3L 20792309 20792327 GCATGGAGATCAAGATCCT 58 20792356 20792375 GTCTTCGTGTCTACAATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fbl FBgn0011205 FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188 3 4 5 150 3L 20381809 20381827 CAAGCTGGTCTACTTCGAG 59 20381940 20383027 GACATTGTCCATCTGTAGGT 59 NA Drosophila melanogaster 50 Rad9 FBgn0025807 FBtr0075080,FBtr0112917 3 2 2 91 3L 18864947 18865074 AGATGCCGAATATAATCCGT 58 18864875 18864893 TGCCTCCAAAGTAAGTTCC 59 NA Drosophila melanogaster 50 CG33924 FBgn0053924 FBtr0091928 2 1 1 60 3L 17712636 17712656 AACCGACGGTACTAAATATGG 59 17712596 17712614 TGATTCGGATCCAGAAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nedd4 FBgn0036736 FBtr0075176,FBtr0075177,FBtr0075179,FBtr0075178 3 4 4 82 3L 17537426 17537445 TTAGTTCGGTAACGAAGACC 59 17537489 17537571 GCCTCCATAATCTAAGCCAG 59 NA Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 3 8 8 172 3L 16956749 16956767 ACGTCAAGTACAAGGACTG 59 16956901 16956979 CAATAGACCCTTGTGAATCAC 58 NA Drosophila melanogaster 50 bru-3 FBgn0036379 FBtr0075815 3 1 2 118 3L 13644686 13657527 CAAGTTACTGTAAGTTGCCA 58 13595558 13595576 AGCTTGCGATCTAAATGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG7638 FBgn0036133 FBtr0076210 1 1 1 80 3L 11104452 11104532 TCAAGCAGAAGATCTCGTC 59 11104576 11104594 AAAGGCATAGGATCAGTGG 59 NA Drosophila melanogaster 50 path FBgn0036007 FBtr0076427 1 1 2 135 3L 9492179 9492274 TTAACATAGTGGACAGCGG 59 9490252 9490270 TCAAAGTCATTTCCAGCCA 59 NA Drosophila melanogaster 50 SP1173 FBgn0035710 FBtr0076960,FBtr0076959,FBtr0076958 1 3 4 87 3L 6685394 6685479 AATAACCGGTCTTACAGCT 58 6685325 6685343 AGTAATGGTCCGGTATTCC 58 NA Drosophila melanogaster 50 CG1268 FBgn0035521 FBtr0113137,FBtr0073230,FBtr0113136 2 3 3 97 3L 4262901 4262919 CCTCACCAGAATCTGATCC 59 4262980 4262998 ATCAAGGGATTCATTTGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 n-syb FBgn0013342 FBtr0072815,FBtr0072817,FBtr0072816,FBtr0072819 3 4 5 300 3L 1635310 1635329 AGAGGAAATTCTGGCTTCAG 59 1632235 1632253 TCGAGAAACTTTCGTCCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG9130 FBgn0035197 FBtr0072657 1 1 2 179 3L 1254314 1254405 CATGAACGAGAATGTGGAC 58 1254548 1254566 TTCTTGAGTACGCGTATGG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 Glut1 FBgn0025593 FBtr0112911,FBtr0072617,FBtr0072616,FBtr0112909 3 4 6 81 3L 982228 982246 CCTGCATCTCTATGGTCTG 59 982289 983866 GTCGATCATTTCCTTGATCAG 58 NA Drosophila melanogaster 50 5SrRNA:CR33355 FBgn0053355 FBtr0086347 1 1 1 62 2R 15653009 15653027 AATACATCGGTTCTCGTCC 59 15652965 15652983 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Lcp9 FBgn0025578 FBtr0072430 3 1 1 60 2R 20667762 20667780 GGCTGATGTTGTAAAGAGC 58 20667720 20667741 CTCATAAGCGTAGTTAAAGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)tid FBgn0002174 FBtr0089505,FBtr0089503,FBtr0089504 3 3 3 122 2R 19594943 19594961 CAAGAAGTACCATCCGGAC 59 19595047 19595065 CCATAGGTGTCGTACTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vrp1 FBgn0034695 FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104 1 7 7 86 2R 17998431 17998841 CAACCTAAATATCTCGTTAGGC 58 17998366 17998384 AGACTGCTGTTTAAGGACG 59 NA Drosophila melanogaster 50 otp FBgn0015524 FBtr0110772,FBtr0071557 2 2 3 182 2R 16774171 16774189 AGACAACCAATGTCTTCCG 59 16772853 16772871 GCTGGTACATCATGGAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Obp57e FBgn0050145 FBtr0086265 2 1 1 62 2R 16435435 16435454 TAGAGTTGGTAACATGTCGC 59 16435392 16435410 CATATGATAGCTCGCACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30154 FBgn0050154 FBtr0086215 1 1 1 146 2R 16420908 16420926 TCAACAACTCTGGGTTCTC 59 16421104 16421123 ACTATATTGTCGGTGGACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syn2 FBgn0034135 FBtr0087095,FBtr0087096 3 2 5 119 2R 12442743 12443115 TTCCTTCAGAAACAACTACCTC 59 12443195 12443213 GACACCTGTGGAAATTCCA 59 NA Drosophila melanogaster 50 CG12970 FBgn0034047 FBtr0087289,FBtr0087288 3 2 2 60 2R 11743958 11743978 GATATGGAGATAAGCTCAAGG 57 11743999 11744018 ACCAAATGGATCAACAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cg FBgn0000289 FBtr0087526,FBtr0087528,FBtr0087529 3 3 7 127 2R 10064189 10065378 CAAGAACTGTGACATACTTCC 58 10065467 10065485 ACAACTCTAATGTGCCTGG 59 NA Drosophila melanogaster 50 CG6280 FBgn0033866 FBtr0087628 1 1 1 181 2R 9643168 9643186 ATCGAAGGTCCAAACTTGG 59 9643452 9643470 TAACCATGTCCATTGGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6220 FBgn0033865 FBtr0087650 1 1 1 60 2R 9580389 9580407 CCAAGTACAATCGCTATGG 57 9580347 9580365 TTTATGCCGAACTCTTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0087931,FBtr0113074,FBtr0087929,FBtr0087930 3 6 6 206 2R 8335670 8335688 ATAACTCGGGCAAGATACG 59 8335921 8335939 CCTTGTAGTGGAATGTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 Cpr49Ag FBgn0033730 FBtr0087922 2 1 1 61 2R 8295497 8295515 GGATAATGTGAACAACGCC 59 8295621 8295639 GTATTCCGTTCGATGTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7759 FBgn0033633 FBtr0088133,FBtr0088134 2 2 2 113 2R 7294149 7294167 CTCAGCAGATGTAAAGCCA 59 7294244 7294317 ACCACAGTTCTCATGAAGC 59 NA Drosophila melanogaster 50 Pka-R2 FBgn0022382 FBtr0088438,FBtr0088437,FBtr0088439 2 3 5 218 2R 5885776 5885794 GAACGCATCATCAAACAGG 59 5884113 5885213 CTTGACATCGAGGAATGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG30492 FBgn0050492 FBtr0088913,FBtr0113382,FBtr0088914,FBtr0088915 1 4 6 87 2R 3538430 3538448 CCATCTGTTAAGGCTCTGG 59 3538499 3538583 CTATTCTAACCTTGGCCCG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111054 1 1 60 94 2R 3249290 3249308 ATACAAGAGCTACCAGTGC 59 3240862 3249233 AAATAGGCTCTGTGATGACC 59 NA Drosophila melanogaster 50 CheB42c FBgn0066292 FBtr0086191 1 1 1 80 2R 2832494 2832515 GTTTAAGTACTGGACCAAACAC 59 2832365 2832453 ATTATAACGGTACCACGCG 59 NA Drosophila melanogaster 50 Pax FBgn0041789 FBtr0081213,FBtr0081212,FBtr0081210 3 3 6 178 2L 19410626 19426206 GATGCTCTATTAGCCGACC 59 19410400 19410485 TAGTGCTCTTGATACACCTG 58 NA Drosophila melanogaster 50 CG17323 FBgn0032713 FBtr0081104 3 1 1 93 2L 18825812 18825830 ATTTCGAGGATATAGGCGA 57 18825944 18825962 GAGTGGGAGACTACTTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 Ca-alpha1D FBgn0001991 FBtr0090004 3 1 4 89 2L 16181896 16182782 AGTACAACTCTTTAAGGGCA 58 16182894 16182913 TCATAGACCAGATAGGTTCC 57 NA Drosophila melanogaster 50 CG14930 FBgn0032366 FBtr0080245 1 1 1 94 2L 11521185 11521203 TCTGGAGTTCGTAGATGGT 59 11521047 11521127 TTGCCAAAGTATAAGCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5385 FBgn0032215 FBtr0080062 2 1 1 60 2L 10311765 10311783 TGGTGAACCCTCAAATACG 59 10311723 10311741 CCTTATTGGAATATCCGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Traf1 FBgn0026319 FBtr0077429,FBtr0077430,FBtr0112925 2 3 3 70 2L 4379579 4379597 AGATCCAGATGCTCAAGTC 58 4379631 4379649 GATCTTCCACAACAGAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 drongo FBgn0020304 FBtr0078035,FBtr0078036,FBtr0078037 2 3 3 120 2L 836547 836565 TCCCATCTACAATGCAGTG 59 835447 835465 GTCGAGATCCTTAAGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089431,FBtr0089436,FBtr0089435 2 3 10 116 2L 111013 111031 TGGAAGACACTTAACCTGC 59 111110 112701 AAACATGATACCCTGGTCAC 59 NA Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089431,FBtr0089436,FBtr0089435 3 3 10 118 2L 111010 111030 GATTGGAAGACACTTAACCTG 58 111110 112700 AACATGATACCCTGGTCAC 58 NA Drosophila melanogaster 50 CG15604 FBgn0030713 FBtr0074157 1 1 1 132 X 15846073 15847920 ATCAGTCACATGCAGTCAC 59 15845959 15845977 TATACCCTTCTCTGTGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11095 FBgn0030528 FBtr0073827 2 1 1 72 X 13706074 13706158 GGCACGAATGAAATATCCC 58 13706194 13706212 AGGAGATCTGAAAGCTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 c12.1 FBgn0040235 FBtr0071324 1 1 1 72 X 9213078 9213096 AAAGGATCTGAGTGCACTG 59 9212961 9213044 CCTGTATTTCAGTTTCGTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5778 FBgn0038930 FBtr0084182,FBtr0113265 2 2 2 115 3R 17911577 17911962 CTACGACTGTAATCCACCC 59 17911480 17911498 CGTTGTAGTATCCTCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr92a FBgn0045471 FBtr0083865 3 1 1 110 3R 15947779 15947857 CTACGCTGGATACTTTATTCCT 59 15947928 15947946 GGAGTGCTGATAAGAACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gish FBgn0011253 FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083265,FBtr0083261,FBtr0100333,FBtr0083263 2 7 8 116 3R 12125398 12126972 ATGGTTCAGTACAGGTTGTG 59 12127051 12127069 TTTCATCGACCACTTCGAC 59 NA Drosophila melanogaster 50 kin17 FBgn0024887 FBtr0078181 1 1 1 72 3L 20350906 20350924 ATTGACAGATATCAGGGCA 58 20350960 20351050 CCAAATGAGCTTGATCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scyl FBgn0041094 FBtr0076168 3 1 2 63 3L 11246056 11246817 TAAAGATTGGACCAGCAGAC 59 11246843 11246861 CTTCTTGGACATCAGGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kaz1-ORFB FBgn0063923 FBtr0072488,FBtr0100851,FBtr0072493,FBtr0100224 2 4 6 108 3L 217438 217504 ATTTGTTTCAGGTCTTGCC 58 217576 217594 TATCGTAGGTTCAGTGGGT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 ari-2 FBgn0025186 FBtr0071774 2 1 1 99 2R 18103673 18103751 CTCTTTGAGTACCAGCAGG 59 18103814 18103832 GATTCTCGAGATCACCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15651 FBgn0034567 FBtr0071553 2 1 1 192 2R 16872902 16872979 ATGTGATTTGTTCCTGCAG 58 16872671 16872689 CTGTTTGGTGTGAAAGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11048 FBgn0034487 FBtr0086316 3 1 1 244 2R 16128045 16128063 CGAAAGTGGAGAACTCAGG 59 16128270 16128410 AATTTCTGTTGTGGGATCAC 58 NA DesignNoJunction Drosophila melanogaster 50 Obp56a FBgn0034468 FBtr0086476 2 1 1 65 2R 15585277 15585296 GAACTCCTACTTCGTGATCG 59 15585324 15585581 TTAAGGGACGATCCAACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hts FBgn0004873 FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086547,FBtr0086548 3 6 6 87 2R 15297367 15297385 AGAACGATGTCGAACTACC 59 15297237 15297316 TTCTTCCAGATCCCTTGAC 58 NA Drosophila melanogaster 50 CG6805 FBgn0034179 FBtr0086966 1 1 1 130 2R 12894007 12894306 TTTAAGTTCGTGGAAGGCA 59 12894400 12894418 TGATAAGACAGCTGGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr22e FBgn0045497 FBtr0077888 2 1 1 88 2L 1785075 1785148 AAGTATCACGGACTTTGCA 59 1785200 1785218 AACCCATCTCGTAGTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR32546 FBgn0052546 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG41355 FBgn0083997 FBtr0111185 3 1 1 66 X 22324591 22324609 GCATATTAACGGTTTGCCG 59 22324543 22324561 TACTCGTAGACGTTGACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1678 FBgn0031176 FBtr0077219 2 1 1 283 X 21273723 21273741 CGTGTAATCTTCCTCATCG 57 21273458 21273476 TTTACATGAAGGACTCGGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11227 FBgn0031139 FBtr0077274,FBtr0077273 2 2 3 60 X 20802902 20802920 ATAGAGTTGCGAATGAGCC 59 20802860 20802878 GGCGATATTCATGATCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12701 FBgn0031071 FBtr0074808,FBtr0074807 2 2 2 60 X 19671574 19671592 AATCAAGAGCGAGTACGTG 59 19671532 19671552 GTAGAGCTCTATGCTCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tao-1 FBgn0031030 FBtr0074771,FBtr0074772 2 2 4 200 X 19471224 19471307 AAGAGATACGCTTCCTTCG 59 19471042 19471060 GATAGCTCAACCCACTGAG 59 NA Drosophila melanogaster 50 car FBgn0000257 FBtr0074727 1 1 2 187 X 19461774 19461792 TCCATCTGCAAACAGAGTC 59 19462065 19462083 GATTTGGCTCTTAAGCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Grip84 FBgn0026430 FBtr0074775,FBtr0074777,FBtr0074776 2 3 3 80 X 19457158 19457176 ATCTCCAAGTACCAAATGC 57 19457034 19457114 TTCCTTCCAAATCTTGCAC 58 NA Drosophila melanogaster 50 CoRest FBgn0053525 FBtr0091483,FBtr0091480,FBtr0091482,FBtr0091484,FBtr0091481 3 5 5 160 X 19417451 19417529 GCAGTCTGAGTACGAAGAG 59 19417651 19417756 ACTCCTCCAATTTCAGATCAG 59 NA Drosophila melanogaster 50 CoRest FBgn0053525 FBtr0091480,FBtr0091482,FBtr0091481 1 3 5 171 X 19418034 19418052 ATCCATAGCCAGTTTGGTC 59 19418187 19419220 GGCGATTATCTTGTCATCG 58 NA Drosophila melanogaster 50 Pfrx FBgn0027621 FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720 3 8 8 60 X 19402026 19402044 GTTAAACGAGATCGATGCC 58 19402068 19402086 CTTCTCCTTGATTTGCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pfrx FBgn0027621 FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720 1 8 8 60 X 19401733 19401752 GTCGTCTACAATAACGAGGG 59 19401772 19401793 GGATGTTCATCAGGTAGTAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8051 FBgn0031012 FBtr0074683 1 1 1 83 X 19197563 19197679 CGTTAACATTCTAGTGACGT 57 19197499 19197517 CTGGAGATTCCTAGACCAG 58 NA Drosophila melanogaster 50 CG15882 FBgn0030983 FBtr0074703 3 1 1 61 X 19018199 19018217 GAATGATGTCGACATTGCC 59 19018156 19018176 CTTCCTTCGAAACAGATTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pk17E FBgn0004462 FBtr0074634 3 1 1 81 X 18685101 18685186 CAACCTCCATATTCTATCGGAG 59 18685228 18685246 ACGAACCAGATCAATGGAG 59 NA Drosophila melanogaster 50 CCKLR-17D1 FBgn0030950 FBtr0113002,FBtr0113001,FBtr0074608 2 3 3 207 X 18607851 18607869 AGATCATCGCCATCATCTG 59 18607608 18607626 AGATAGGTGAAGCTCAGAG 57 NA DesignNoJunction Drosophila melanogaster 50 betaCop FBgn0008635 FBtr0074576 3 1 1 60 X 18276341 18276428 CTTCGGCAATATTGTTTACG 57 18276300 18276318 AATGGTATTGAGGACCACC 58 NA DesignRelaxed Drosophila melanogaster 50 CG8661 FBgn0030837 FBtr0074444 1 1 1 60 X 17178270 17178291 TACAAATCCCTAAAGATCGCTC 59 17178231 17178252 CCCACTTGATTATGCAATTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rrp45 FBgn0030789 FBtr0074355 1 1 1 266 X 16684011 16684031 CAGTTGGATAATAACGAGAGC 58 16683710 16683728 CTAGATGTATCGCTTGGCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG15642 FBgn0030642 FBtr0074076 3 1 1 78 X 15361277 15361296 ATCATTTGTGGAACCTGGAG 59 15361218 15361236 TATAGGCGTACGGATTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15032 FBgn0030626 FBtr0112986 3 1 2 107 X 15200610 15204426 CATCTGGAGAACATGGAGG 59 15204496 15204515 AAAGTAGGGAATGTCTTGCT 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG9413 FBgn0030574 FBtr0073943,FBtr0073944 2 2 2 91 X 14482758 14484291 GGAACTATGATAGGGTCTGG 58 14482686 14482705 GCAAGCCAGATTATAAAGCT 58 NA Drosophila melanogaster 50 CG11674 FBgn0030551 FBtr0073926 2 1 1 61 X 14119285 14119303 AATCAAGCTGTCTAGAGGA 57 14119242 14119260 CTTTGTCAGGCAAATCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ste:CG33240 FBgn0053240 FBtr0073877 1 1 1 60 X 13950151 13950170 GTATTTCAGCGAGATACTGG 57 13950110 13950128 CAAGCCAGAGGAACTATCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10992 FBgn0030521 FBtr0073838 1 1 1 140 X 13674680 13675206 TACGGATCTAATCAGGGCT 59 13674558 13674576 ATAATCGACGGTGTAACCG 59 NA Drosophila melanogaster 50 rdgB FBgn0003218 FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194 1 4 4 81 X 13663029 13663047 GGACAATGGCTATCAGGAC 59 13663089 13663193 GACAATGTCAATTACGTCTACG 59 NA Drosophila melanogaster 50 sno FBgn0005410 FBtr0073736,FBtr0112848,FBtr0073735,FBtr0112849 1 4 4 113 X 13100745 13100763 GATCAAATAGAAGTGCCCG 58 13098089 13098107 TATGGGTATGGGTATACCG 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 tomosyn FBgn0030412 FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678 2 4 4 84 X 12531143 12531162 GAAACATACACGTTGTTCAC 57 12531208 12531302 GTTCTAACCACTTCAATTGC 57 NA Drosophila melanogaster 50 CG12720 FBgn0030379 FBtr0073631 2 1 1 111 X 12090626 12090644 GAGTTCATTCCCACCAGTC 59 12091280 12091496 TCTTGACGTACCCATTTGAG 59 NA Drosophila melanogaster 50 CG15221 FBgn0030331 FBtr0112979 3 1 1 181 X 11628579 11628597 AACATCTGGATGCTGATCG 59 11628742 11628832 ATACCAATCGCCATAGCTG 59 NA Nonspecific Drosophila melanogaster 50 CG2446 FBgn0030328 FBtr0073615,FBtr0073618,FBtr0073619 1 3 5 80 X 11607718 11607802 GCAGGAGACTAAACACCAG 59 11607656 11607677 CTCCTTATCGTGGTATCTATCG 59 NA InUTR Drosophila melanogaster 50 rho-4 FBgn0030318 FBtr0073518,FBtr0073517,FBtr0073519 3 3 3 82 X 11498697 11498777 TACATTTCCAGGACGATCC 58 11498822 11498841 ATTGTAGATGAACAGGGTGG 59 NA Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073490 2 1 12 200 X 11276004 11281814 AATAGCTGATAATCAGCGCA 59 11289281 11289301 TCGTATAACCAGCTATCATCG 59 NA Drosophila melanogaster 50 antdh FBgn0026268 FBtr0073468 2 1 1 115 X 11062726 11062744 GTAATGCAGCAGGTATTGC 59 11062629 11062647 ATGCTATTGATGAGCACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sesB FBgn0003360 FBtr0073423,FBtr0073422,FBtr0073421,FBtr0073424 1 4 4 116 X 10676325 10676422 GTACAAGCAGGTCTTCCTG 59 10676227 10676245 GGGTAGACAAAGCACAGAG 59 NA Drosophila melanogaster 50 Gbeta5 FBgn0030011 FBtr0071189 1 1 1 71 X 8045298 8045316 CATCTTTGGCGTCAATTCG 59 8045245 8045263 GTGTAATCGTTGTAGCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10920 FBgn0029963 FBtr0071150 3 1 1 60 X 7747490 7747508 AGTTCTGGTGGAATCTGAC 58 7747448 7747467 TGTGTTATAACCACTACGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34338 FBgn0085367 FBtr0112540 2 1 1 81 X 7663070 7663090 CGAGGACAAACAACATAATCG 59 7663130 7664835 GGGATAAATTCGACATCTTCTG 58 NA Drosophila melanogaster 50 CG15035 FBgn0029949 FBtr0071063 1 1 1 60 X 7296322 7296340 GGTTATGACTTCGATGCAG 58 7296280 7296299 TCGGGAATTGAATGGTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100214,FBtr0100200,FBtr0100205,FBtr0100201,FBtr0100206 1 5 15 191 X 6982728 6982746 GAAAGACACTCACTGACTC 57 6979978 6981655 ATTCTGTATCCATTCCGGA 57 NA Nonspecific, InUTR Drosophila melanogaster 50 CG32736 FBgn0052736 FBtr0071007,FBtr0071008 1 2 2 60 X 6905876 6905894 GAAGAACTACGTGGAAGAG 57 6905918 6905936 TTAGTTGGTGTTATTCGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pod1 FBgn0029903 FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966 2 5 6 106 X 6701674 6702857 CAATTATTCCACGTTTGGGTC 59 6702925 6702943 GATATTCTCGTGGGATCCC 58 NA Drosophila melanogaster 50 CG14445 FBgn0029851 FBtr0112954,FBtr0070893 3 2 2 119 X 6132220 6132983 GATTCTACCGCAAGATTGC 58 6133066 6133084 AATCGAACTTGTACATGGC 58 NA Drosophila melanogaster 50 CG12729 FBgn0029816 FBtr0070819 2 1 1 60 X 5739858 5739877 ATTCCACCTGTAAGTCATCG 59 5739898 5739918 CTCTTTATGAACTTGTCCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4064 FBgn0029808 FBtr0070812 1 1 1 63 X 5679370 5679389 AAATATGAGACTCACATCGC 57 5679490 5679509 TTGTGTTTATCTCCTGAAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG15768 FBgn0029806 FBtr0070834 3 1 1 68 X 5670684 5670702 TTAAATTCGCACCAACTGC 59 5670634 5670652 AGTATCGTTCGGTTTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17761 FBgn0040914 FBtr0070856 1 1 1 202 X 5537046 5537064 AAAGATTACTGGACCAGCC 59 5535973 5535991 ATCCAAATTGAAGTCCTCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG15471 FBgn0029726 FBtr0070733 3 1 1 60 X 4676888 4676906 TCGTTGACACAGATGATCG 59 4676846 4676864 ATAATCGCATACTCGGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15471 FBgn0029726 FBtr0070733 1 1 1 60 X 4676651 4676669 GGACAAGACATTCGATCAC 58 4676609 4676627 GTGTCGTACTTTAAAGCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0334 FBgn0028325 FBtr0070708,FBtr0070710,FBtr0070709,FBtr0070711 1 4 4 145 X 4598141 4598234 ACAACAACTACGGAATGGG 59 4598343 4598361 ATAGTTGATGGCGAACTCG 59 NA Drosophila melanogaster 50 Usf FBgn0029711 FBtr0070701,FBtr0070700 2 2 2 60 X 4440714 4440733 TCGACGTTTAATGTTACCCT 59 4440673 4440692 CCTCGAATAGATCACTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sgs4 FBgn0003374 FBtr0070524 2 1 1 61 X 3144871 3144889 CACCCAAGTGTAAATCCGA 59 3144914 3144932 CTTTGGCTTAGATGTGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trol FBgn0001402 FBtr0070451 2 1 7 106 X 2417516 2417534 TTTGGAAGTAAGTTGCAGC 58 2416445 2417449 TCCTCGATATCACTAGATTCAG 58 NA Drosophila melanogaster 50 boi FBgn0040388 FBtr0070458,FBtr0070457 1 2 3 147 X 2340562 2340580 AAGCGGACTTTGTTACCTC 59 2339616 2340452 CCAGAGTTGTTCTTATCGGA 59 NA Drosophila melanogaster 50 ptr FBgn0003159 FBtr0070404,FBtr0070403,FBtr0070402 3 3 3 100 X 2243041 2243059 AGAGTTCCACTGAGTAAGC 58 2242892 2242910 TACACCTGACTAGCATCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG4325 FBgn0026878 FBtr0070342 1 1 1 60 X 1937204 1937224 CGAGAATCTACTTTACGAGAC 57 1937164 1937182 CCGCTGGTTAAGATATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF2B-epsilon FBgn0023512 FBtr0070350,FBtr0070351 2 2 2 60 X 1814876 1814895 GGATTCCATGATGGATTGTC 58 1814774 1814793 CACTAGATGATTCTCCTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 arm FBgn0000117 FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988 2 4 5 93 X 1787501 1787519 CAGAAGAAGCATATGAGGG 57 1786143 1787446 GTATCATATCCTTGCTGATGG 58 NA Drosophila melanogaster 50 MED18 FBgn0026873 FBtr0114454,FBtr0070308 3 2 2 115 X 1760520 1760607 TAGCAAAGGGCTATATGTTCC 59 1760684 1760702 GTAGCTTTGTGAGATTGGC 58 NA Drosophila melanogaster 50 a6 FBgn0023130 FBtr0070279 3 1 1 138 X 1589105 1589123 ACAGCATCCTGATAACCAG 59 1588985 1589004 GTTACCTCTTCGATGGTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33082 FBgn0053082 FBtr0070174 1 1 1 60 X 925359 925377 TCTTAGAGTGCTCACTCTG 58 925401 925419 CAGTCTCTTTGACTGTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13361 FBgn0029532 FBtr0070149 2 1 1 60 X 646583 646603 CAGATCGTCTACATCGATGAG 59 646543 646562 TAGTGGGACTCAGAGTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40948 FBgn0085541 FBtr0113954 1 1 1 60 U 8664463 8664484 ATACTAGACACATGGAACAAGG 59 8664424 8664445 TCTCCGATGTCTTGAATAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40992 FBgn0085550 FBtr0113963 1 1 1 60 U 5052778 5052796 CGCTCTGTATGTTTGAGGT 59 5052736 5052757 GATATACAACAGTCCACTTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40849 FBgn0085525 FBtr0113938 3 1 1 123 U 2835802 2835823 GCTATACAAATAAGGAGGAAGC 58 2835700 2835718 TCCTCAGCTATGGATTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sv FBgn0005561 FBtr0100346,FBtr0100342,FBtr0089328,FBtr0100343,FBtr0089327 1 5 7 102 4 1131421 1131439 GTACCCGGTTCAGATTACG 59 1131504 1131922 AGGACGAATTTATCAAGCCA 59 NA Drosophila melanogaster 50 Eph FBgn0025936 FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086 1 4 5 108 4 640795 640889 GCTCAACAGATATCCAGGT 58 640961 640979 TTATAGTGTCGAGTTGCCG 59 NA Drosophila melanogaster 50 Map205 FBgn0002645 FBtr0085876,FBtr0085875 3 2 2 60 3R 27884514 27884535 GAACTTCGTTGTTGAAGAAGAG 59 27884475 27884494 AGAAAGCGGTATCTCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gammaCop FBgn0028968 FBtr0085794,FBtr0085793 1 2 2 102 3R 27400438 27400532 ATTCCATAGCCACCTTTGG 59 27400598 27400616 ATGTACTCGTCGTCATAGC 58 NA Drosophila melanogaster 50 CG9737 FBgn0039758 FBtr0085639 3 1 1 81 3R 26068275 26068296 ATGATCGTCATATCCTAACAGC 59 26068151 26068234 AAACGCACATGCTTTAATCC 59 NA Drosophila melanogaster 50 CG31029 FBgn0051029 FBtr0085585 1 1 1 272 3R 25956420 25956438 GTCGTACCCAACTGATCTC 59 25956113 25956184 TCAAGAAGGTGTAGCATCG 59 NA DesignRelaxed Drosophila melanogaster 50 Jon99Ci FBgn0003358 FBtr0085511 3 1 1 62 3R 25751839 25751857 GTCTGTAGTGCCCTAACTG 59 25751795 25751813 ATGACGAATCTCCAGATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31036 FBgn0051036 FBtr0114571,FBtr0085501 3 2 2 80 3R 25736319 25736401 ATCTGAACCCTACATCAGG 58 25736444 25736463 GAGTTAAAGAATCCAGCCTG 58 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 2 8 8 121 3R 24962130 24962213 ACCAATGATAAGCCCTACTC 58 24962294 24962315 CCCATGAACATATAGGTTTCAC 58 NA Drosophila melanogaster 50 CG14061 FBgn0039598 FBtr0085313 1 1 1 60 3R 24582932 24582952 GGAATTAGCATTCGATGATCC 58 24582892 24582911 AATGGAATTCTTGACTTCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4884 FBgn0039565 FBtr0085264 1 1 1 84 3R 23783411 23783429 GTCAATGGAAAGAAGCTGC 59 23783293 23783311 TCGATTGACTAAAGCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31055 FBgn0051055 FBtr0085244,FBtr0085242 2 2 3 125 3R 23512759 23512777 AATGACACCCAATTTGTCG 58 23512282 23512670 TTGCCGAATCTTACAATCC 57 NA Drosophila melanogaster 50 CG5590 FBgn0039537 FBtr0085215 3 1 1 120 3R 23504525 23504543 TTCTCGGGTAAACTGAAGG 58 23504627 23504645 CCTACAGCTTGGACTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 raps FBgn0040080 FBtr0085189 2 1 1 62 3R 23409075 23409093 ACGCCTACTTCTACCTAGG 59 23409119 23409137 GCGTAAGATCGTGTTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wdb FBgn0027492 FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206 2 7 7 129 3R 23392424 23392442 AAATTCTTAGGACTGCGGG 59 23392249 23392331 ATCCGTTGATGATACTGCC 59 NA Drosophila melanogaster 50 CG5938 FBgn0046247 FBtr0113355,FBtr0085159,FBtr0085160 3 3 5 129 3R 23101495 23102020 GCAACATGACGGTATTTGG 59 23102113 23102131 AGGGATTTCTTCAGCACTC 59 NA Drosophila melanogaster 50 CG31064 FBgn0051064 FBtr0085125,FBtr0085126,FBtr0085124 3 3 3 104 3R 23059044 23059062 AAGCTATCGGATTACCTGC 59 23058896 23058977 TATCACAACGATCTCATCGC 59 NA Drosophila melanogaster 50 CG5882 FBgn0039490 FBtr0085109 2 1 1 81 3R 22945078 22945155 TACTGGATGAAACTTCCAGC 59 22945196 22945217 GTCTTCATCGTAGAAAGTTCCT 59 NA Drosophila melanogaster 50 XNP FBgn0039338 FBtr0084837 2 1 2 65 3R 21306131 21306150 ATTGTCCTTACTGGTACACC 59 21305987 21306005 CACAAACTGGATCATGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Fur1 FBgn0004509 FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986 2 5 6 196 3R 21182169 21182187 GAGACGAGGAGACATTCAG 59 21180029 21181956 TGATTTGTGCCATATAGCGA 59 NA Drosophila melanogaster 50 CG10550 FBgn0039321 FBtr0084859,FBtr0084857,FBtr0084858 2 3 3 87 3R 21132485 21132505 ATGCTGAAGTATGGATTCTGG 59 21132358 21132376 TCATATTGGCGTCCTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Nup358 FBgn0039302 FBtr0084813 1 1 1 86 3R 21078946 21079021 CGAATATGTTTGGTCCTCGA 59 21079070 21079088 CAATGTAAGGTGCTACCGA 59 NA Drosophila melanogaster 50 CG11847 FBgn0039281 FBtr0084778 3 1 1 141 3R 20954376 20954466 CAGTAAAGGATGCTCAAGAG 57 20954570 20954588 AGGTAGGGATGAAATTCGA 57 NA Drosophila melanogaster 50 RabX4 FBgn0051118 FBtr0084736 1 1 1 94 3R 20652933 20652953 GCAAGTCCAACATCAATATCG 59 20652801 20652820 ATCGTTATCAAAGTTGTCCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG17782 FBgn0039195 FBtr0084624 3 1 1 158 3R 20197236 20197386 GGGCTTTAAACTCAAGACTC 58 20197097 20197115 ATATGCGATGATGTCGAGG 59 NA Nonspecific Drosophila melanogaster 50 CG6454 FBgn0039187 FBtr0084608,FBtr0084609 3 2 2 81 3R 20175505 20175618 TCAACAAGTTCCCTCAGTG 59 20175662 20175681 TCATTCACCACCAATTCCTC 59 NA Drosophila melanogaster 50 CG5515 FBgn0039163 FBtr0084574,FBtr0084575 1 2 2 60 3R 20014283 20014302 CTACAAGGAAGATCAGACCA 58 20014242 20014262 CATATCGCCACAGTATATGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rox8 FBgn0005649 FBtr0084592,FBtr0084591,FBtr0084593,FBtr0084594 3 4 4 84 3R 19871216 19871235 ATATTCCAACTACCAGGCAG 59 19870980 19871169 CCAGTTGACCTTGATTTCC 58 NA Drosophila melanogaster 50 KrT95D FBgn0020647 FBtr0084508,FBtr0084507,FBtr0084506 3 3 3 106 3R 19824628 19824646 GGATAAGGAGCGTGATCTC 59 19824479 19824558 CATCAATGTACACTCGCAG 58 NA Drosophila melanogaster 50 CG31140 FBgn0051140 FBtr0084499 1 1 5 123 3R 19799164 19799182 TATCTACTTACCTCCGCAC 57 19799269 19802236 CTTGATCATCTGACACGAG 57 NA Drosophila melanogaster 50 Lsd-1 FBgn0039114 FBtr0084456,FBtr0084455,FBtr0084457 1 3 3 166 3R 19591778 19591859 AACATACCCAGAAACCTGG 59 19591989 19592007 TGAAGGCTACCATAGAACG 58 NA Drosophila melanogaster 50 Ir FBgn0039061 FBtr0113273,FBtr0084371 1 2 2 157 3R 19009821 19009839 GTCCACTGTACATGCTCTC 59 19010018 19010036 CACATTCACGAAACGATGG 59 NA DesignNoJunction Drosophila melanogaster 50 Cyp6d4 FBgn0039006 FBtr0084304 1 1 1 81 3R 18524994 18525012 ATTCAGCTGAGGAATACCG 59 18525056 18525135 TAATATGACCATCGGGTGTC 58 NA Drosophila melanogaster 50 CG13847 FBgn0038967 FBtr0084296 3 1 1 106 3R 18252446 18252573 CAATTATGTGAAGCAGGAGC 59 18252359 18252377 TCAACTGGTAGATCTGCTG 58 NA Drosophila melanogaster 50 CG5380 FBgn0038951 FBtr0084236 2 1 1 60 3R 18192583 18192601 CAAAGGCATCTGGATTAGG 57 18192541 18192561 GTTGAGCTGTATCATGTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 how FBgn0017397 FBtr0084177 1 1 3 118 3R 17897749 17900174 ATGCTGATCATAGCGTAGG 58 17900256 17900274 TATCTCAATGAAACCCGCC 59 NA Drosophila melanogaster 50 slou FBgn0002941 FBtr0084123 2 1 1 154 3R 17380374 17380394 TAGAGAACATACTGGATCCGA 59 17375448 17380258 ATTCAAATCCTGGGCAGAC 59 NA Drosophila melanogaster 50 RpS20 FBgn0019936 FBtr0083964 1 1 1 124 3R 16648270 16648288 CAAAGAACCAGAACTTGCG 59 16648604 16648862 GATTCTCATCTGGAAGCGA 59 NA Drosophila melanogaster 50 CG17267 FBgn0038821 FBtr0114503,FBtr0083931 1 2 2 60 3R 16564028 16564047 CTATCCCATCGAGTATGTCC 58 16563987 16564007 AATATAGCGCCTTCTGTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4159 FBgn0038811 FBtr0083944 3 1 1 116 3R 16417448 16417468 CTGCAGAAGGTTAAAGAAACC 59 16417288 16417307 CGTAAAGGACATGATGAAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4662 FBgn0038735 FBtr0083813,FBtr0083814 1 2 2 99 3R 15676654 15676674 GACAAGGACGAATTTCTAGTG 58 15676847 15677566 AAATGCGCTCCATAATTCG 58 NA Drosophila melanogaster 50 CG5237 FBgn0038693 FBtr0083742 3 1 1 80 3R 15071131 15071288 CTCAAACTCTACTAACTGTCCT 58 15071072 15071090 GAGTGGGATCTTCAAGAGG 59 NA Drosophila melanogaster 50 CG5555 FBgn0038686 FBtr0083746 2 1 1 107 3R 15004415 15004433 CAAGACAGAGGTTTCCGAG 59 15004260 15004347 TGTACATCCTTTAGCTTAGCTG 59 NA Drosophila melanogaster 50 ATPsyn-d FBgn0016120 FBtr0083728,FBtr0083727 3 2 2 92 3R 14921152 14921170 CAATCCTCGATCAACTGGT 59 14921226 14921244 ATAGATGTCCGACTTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14290 FBgn0038662 FBtr0083723 2 1 1 99 3R 14753844 14753931 GGATTACTTTATGAGTACCCAC 57 14753766 14753784 GGAGATGAATTTGGGACTC 57 NA Drosophila melanogaster 50 gwl FBgn0004461 FBtr0083674 2 1 1 91 3R 14575311 14575330 TTTCTACGAGTTCATGACCG 59 14575381 14575472 GCCATTCGATGTTCTTATTCAG 59 NA Drosophila melanogaster 50 koko FBgn0051232 FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629 2 5 5 155 3R 14229544 14229623 TACGATGAGTTCCTCATTGC 59 14229741 14229759 CATCGACCAGTACTCATCG 59 NA Drosophila melanogaster 50 SF1 FBgn0025571 FBtr0083456 1 1 1 87 3R 13368197 13369225 AGAATCCGGAAGAAAGATCG 59 13369275 13369293 TTCCTGTAGCGGAATTCAC 59 NA Drosophila melanogaster 50 CG5319 FBgn0038501 FBtr0083435 3 1 1 85 3R 13213351 13213437 CTAACGTTGCTAAGGTACCT 59 13213484 13213503 TACTTCTTGGCTGCATAGAG 59 NA Drosophila melanogaster 50 Akt1 FBgn0010379 FBtr0083226,FBtr0083228,FBtr0083227 3 3 3 111 3R 11928586 11928604 TTCGACAAGGAGTTTACGG 59 11928679 11928768 CTCCTTGGTAGCTGAACTG 59 NA Drosophila melanogaster 50 srp FBgn0003507 FBtr0083216 1 1 3 130 3R 11826497 11827481 CTAGAAGATTGAGCGCCTC 59 11827575 11827593 GAGCTTATAGTACAGGCCG 59 NA Drosophila melanogaster 50 CG14872 FBgn0038346 FBtr0083156 3 1 2 60 3R 11335076 11335097 CTATCTTCAAGTTCTTCACTCG 58 11335037 11335056 TTGATCAGCTCGAAGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5044 FBgn0038326 FBtr0083090,FBtr0083091 3 2 2 97 3R 11183940 11183959 GGGATTCTAGAGAATCTGCA 58 11184283 11184301 AACGTAACCTTCATCGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34316 FBgn0085345 FBtr0112514,FBtr0112515 1 2 2 83 3R 11056745 11056763 CAAATCCTTATACACCGCC 58 11056810 11056894 TTTGTAATGGAGGTTTCGG 57 NA Nonspecific Drosophila melanogaster 50 Gyc88E FBgn0038295 FBtr0110961 1 1 3 80 3R 11015636 11015727 TGCAGTCATGGTCATAGTC 59 11015771 11015789 AGAATGCTGGAAACTCTGG 59 NA Drosophila melanogaster 50 Gyc88E FBgn0038295 FBtr0083028,FBtr0083027,FBtr0110961 3 3 3 116 3R 11013199 11013217 TTCAGCAGAGATCTCATGC 59 11013295 11013377 CTCATCCAACAATCTCATGGA 59 NA Drosophila melanogaster 50 Aats-met FBgn0027083 FBtr0082895 3 1 1 116 3R 10084721 10084741 GTCTGGTTAGATGCTTTAGTC 58 10084558 10084576 ATGGAACTTGAGGATGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9616 FBgn0038214 FBtr0082896 1 1 1 65 3R 10070972 10070990 TTCGAAATGCAAGGAAAGC 59 10070870 10070891 CTCATTCTTATTGGGATACGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sp212 FBgn0053329 FBtr0082899 1 1 1 104 3R 10049440 10049458 TTTCGAATAGCCGTCAGAC 59 10048881 10049372 AACGGTTACAAATTCGCTG 59 NA Drosophila melanogaster 50 Art9 FBgn0038188 FBtr0082879 3 1 1 167 3R 9768727 9768745 TAATAGTGTCCGAGTGGGT 59 9768519 9768537 TCACTTCGACAGTCTTACG 59 NA DesignNoJunction Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 2 8 8 284 3R 9504400 9504475 AACACGACGTAAATCAGGA 58 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG32473 FBgn0052473 FBtr0082743 2 1 3 122 3R 9134615 9135198 GCGTACTTTCAGATAATCGC 59 9135283 9135301 GGAATCCCAGATTCTGGAG 59 NA Drosophila melanogaster 50 CG7966 FBgn0038115 FBtr0082715 3 1 1 82 3R 8875356 8875445 ATGGGATAAGCAGTTCTATCC 59 8875294 8875312 TTCCTCCATTCACAGTGTC 59 NA Drosophila melanogaster 50 CG11670 FBgn0038114 FBtr0113230,FBtr0113231 1 2 2 82 3R 8869501 8869519 AGTCGTAAACACTATCGCT 58 8869562 8869652 GTATAAACACCTGGAAGTTCAC 58 NA Drosophila melanogaster 50 CG4115 FBgn0038017 FBtr0082568 3 1 1 93 3R 8186205 8188298 GCGAGAATGTGAAATACATCTG 59 8188352 8188370 CAACCGTTGATGTTTGTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG6923 FBgn0037944 FBtr0082432,FBtr0082433 2 2 2 109 3R 7571002 7571087 CTACTTTGGAAACTATTGAGCG 59 7570914 7570932 GAGGTTTAAGCAAATGGCG 59 NA Drosophila melanogaster 50 CG5270 FBgn0037897 FBtr0082387 3 1 2 90 3R 7251369 7251444 AGTGGACAAACAGATTCCC 59 7251496 7251516 GATGTATATTACGCGGATCCT 59 NA Drosophila melanogaster 50 fau FBgn0020439 FBtr0082308 3 1 4 64 3R 6599527 6599545 TACAACTACAGCACAGAGC 59 6599481 6599499 GAAGAATAGCTGTAGCCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12817 FBgn0037798 FBtr0082243,FBtr0110952,FBtr0110953 1 3 3 120 3R 6050095 6050113 ATGATTTGAGTGAGGAGGA 57 6049685 6049703 AATTGCCTTCACGAATTCC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG8500 FBgn0037754 FBtr0082139 1 1 1 129 3R 5611792 5611867 ACAGACAGGTCATAAGCTG 58 5611960 5611978 GAGTAGACCAGGATGAAGG 58 NA Drosophila melanogaster 50 Rpt3R FBgn0037742 FBtr0082165 2 1 2 106 3R 5581288 5581354 TACAAGCAAATTGGCATCG 59 5581200 5581218 GATGCAGTTGTATGATGGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Fps85D FBgn0000723 FBtr0082053,FBtr0082051 3 2 4 109 3R 5195422 5198485 AACAGCAGATATCGCTCTC 59 5195331 5195351 GAAGTCACCATCGTTATTCAG 58 NA Drosophila melanogaster 50 CG11776 FBgn0037631 FBtr0081935 3 1 1 82 3R 4622475 4622494 TCCAAAGACTGACTAACGAG 59 4619075 4622433 CTTTATTTCCTCTAACTGGGTC 58 NA Drosophila melanogaster 50 Pif1B FBgn0046874 FBtr0091717,FBtr0091716 2 2 2 61 3R 4600939 4600957 TTGATATGCATGCCATGGA 59 4600828 4600915 CTTAAGGTGCTTTGGTTTCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Cenp-C FBgn0086697 FBtr0089973 3 1 1 82 3R 4393444 4393534 TAAATACTACCGGTATTCGGAG 58 4393577 4393595 CTTGCTAGGATCCATGGTG 59 NA Drosophila melanogaster 50 Coq2 FBgn0037574 FBtr0081858 1 1 1 225 3R 4141339 4141357 CTACGACACGATATACGCC 59 4141074 4141150 GAGGGAATAGATCTGCTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG11672 FBgn0037563 FBtr0081865 1 1 1 60 3R 4115981 4115999 TATTGCCGGTAACATTGAG 57 4115939 4115958 GATCACATCACTTAGTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18749 FBgn0042182 FBtr0100545 3 1 1 80 3R 4072981 4073000 TTCGCTGATTAATTACGGCT 59 4073043 4073118 TTAAGCCTGGTCGTATTCG 59 NA Nonspecific Drosophila melanogaster 50 CG7878 FBgn0037549 FBtr0113205 1 1 1 79 3R 3949762 3949780 AGAAGTACTCCTTTCGTGG 58 3949885 3949903 CTCCAAGTCGGATATCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10445 FBgn0037531 FBtr0081762 3 1 1 179 3R 3743510 3743589 CTAATGATTGGGATGCTGC 58 3743349 3743369 GCCATCTCTTCTAGTACTGTC 59 NA Drosophila melanogaster 50 Rtnl2 FBgn0015831 FBtr0081548 3 1 1 60 3R 3355237 3355257 TCTTACGTTTCTATCCTCACC 58 3355197 3355215 GCCAGATAAAGAGTCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi10 FBgn0037417 FBtr0078600,FBtr0078601 2 2 2 158 3R 2092757 2092839 ATATCATTGCTGGGCAGTC 59 2092961 2092979 CTCTACCTGATCCAACTGC 59 NA Drosophila melanogaster 50 CG2100 FBgn0037369 FBtr0078724 1 1 1 60 3R 1560529 1560547 ATGGATTCCCAACGTACTG 59 1560487 1560507 CTTCATTCGCTTCACTTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16708 FBgn0037315 FBtr0078804,FBtr0078803 3 2 2 123 3R 1185797 1185815 CTCCCGTTACAGTCATCTG 59 1185264 1185711 CAAATTGCGAATATCACCAC 57 NA DesignRelaxed Drosophila melanogaster 50 CG1115 FBgn0037299 FBtr0078777 3 1 1 90 3R 1052508 1052526 CCAAATACTTCTCTGCCAG 57 1052580 1052598 GACCCATGATTGGGTAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31530 FBgn0051530 FBtr0078882 1 1 1 85 3R 578308 578532 ATCTATCTGTGGCAGTGGA 59 578241 578259 TCCAGCAAGATCTTCTTGG 59 NA Drosophila melanogaster 50 CG31534 FBgn0051534 FBtr0078866 3 1 2 152 3R 535932 535950 TGGCAACAACATCTACCAG 59 536066 536347 CAGCCCAGATCTAATTCGT 59 NA Drosophila melanogaster 50 CG14650 FBgn0037252 FBtr0078926 3 1 1 171 3R 265863 265950 AATACCATAAGGTGCAGCA 58 266154 266172 TTAGCGCCAAGTATTTCCA 59 NA Drosophila melanogaster 50 eIF3-S10 FBgn0037249 FBtr0111110 1 1 2 98 3R 258422 258440 GAAGAACCTGACGAAGGAC 59 257836 258362 AAATAGATATCTGGATGGGCC 59 NA Drosophila melanogaster 50 CG14646 FBgn0037241 FBtr0078919 1 1 1 60 3R 216954 216974 TTAGGAATCTAGAGAACCGAG 58 216995 217014 TGTAACTGAATGTTGGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9779 FBgn0037231 FBtr0078958 1 1 1 133 3R 136072 136145 AATCAGCTATCCACCTTGC 59 135957 135977 GCCTTCATCATTTCCTTTGAC 59 NA Drosophila melanogaster 50 CG14639 FBgn0037224 FBtr0078975 2 1 1 65 3R 72901 72920 ATACAAGTACCAACCTCAGC 59 72948 72966 GAAATGGGTGTCAGAGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14641 FBgn0037220 FBtr0078985 3 1 1 60 3R 56786 56804 GGGTGTCAATTTGGATTCC 58 56744 56763 ACTTGGATACGGTACTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40053 FBgn0058053 FBtr0111154 3 1 1 107 3L 24003641 24003662 CACCATAAAGCTGTTATTGAGG 59 24003555 24003573 CATTTCCTATCGATCGACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32461 FBgn0052461 FBtr0078567 2 1 1 60 3L 22948281 22948300 GACTTTACACCGAACTTGAC 58 22948240 22948258 TCATATGGCGTCATAGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arf79F FBgn0010348 FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572 3 6 7 86 3L 22862823 22862842 ATTAGCTTTACAGTGTGGGA 58 22862563 22862777 GATAAGACCTTGTGTATTCTGG 58 NA Drosophila melanogaster 50 SPoCk FBgn0052451 FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532 2 4 4 60 3L 22771883 22771901 AAATGGTGACTGGAGATGC 59 22776520 22776538 TCGATACCGATGAGATTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11247 FBgn0037120 FBtr0113184,FBtr0078459,FBtr0078458 2 3 3 150 3L 21718589 21718667 CTATCAGTGTAGGATCTGCC 59 21718458 21718476 CATGTGGTTCTTTAGGTGC 58 NA Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234 2 10 10 73 3L 20826943 20826961 CAAATGCGTCAAACTGGAC 59 20827130 20827148 TGTTGCGTTTGAGTATGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234 3 10 10 74 3L 20826941 20826959 CTCAAATGCGTCAAACTGG 59 20827129 20827147 GTTGCGTTTGAGTATGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7323 FBgn0036943 FBtr0074863 2 1 1 84 3L 20146428 20146579 CATAATGACAGGCAACCAC 58 20146362 20146380 GATAATGCCCATCTTGGTC 57 NA Drosophila melanogaster 50 CG9231 FBgn0036887 FBtr0074972 3 1 1 61 3L 19578681 19578699 ATTATGGTGTACAGTGGCA 58 19578638 19578656 AGATTCATCTTTGTGACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32204 FBgn0052204 FBtr0113429 1 1 1 80 3L 18923741 18923760 GTACTGATATACTCGTGGCG 59 18923240 18923700 TATTTGCACACCGTAGTAGAC 59 NA Drosophila melanogaster 50 Tsp74F FBgn0036769 FBtr0075154,FBtr0075155 3 2 2 94 3L 17886316 17886412 CTTTGTGATATTCGTGGGTG 58 17886241 17886259 GATTTGTACCGAGCAACTC 58 NA Drosophila melanogaster 50 Eip74EF FBgn0000567 FBtr0075202,FBtr0075203 3 2 4 63 3L 17591956 17591974 CCAGATAACGATGGTCGTC 59 17591559 17591929 TAGAATCATCGGCTATGCA 58 NA DesignRelaxed Drosophila melanogaster 50 CG7630 FBgn0040793 FBtr0075217 1 1 1 220 3L 17418703 17418721 TAAGCACATTGTCAAGCAG 58 17419173 17419251 CAGAAGATTTCACGAATCCA 57 NA DesignRelaxed Drosophila melanogaster 50 Or74a FBgn0036709 FBtr0075247 1 1 1 61 3L 17320947 17320965 AGTTAGTCTCACTGCTGTG 58 17320847 17320865 TTAGGAACGTGAAGTAGGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG13035 FBgn0036628 FBtr0075414,FBtr0075415 2 2 2 97 3L 16391793 16391814 TTTGGTCATATCCTGTATTCCC 59 16391125 16391735 AGGTGAAGTTCTTGTCCTG 59 NA Drosophila melanogaster 50 CG4729 FBgn0036623 FBtr0075417,FBtr0075419,FBtr0075418 2 3 4 82 3L 16377075 16377094 TATCAAGCCCATAGACAAGC 59 16376952 16377031 ACACGAAGATAAGTTGGGAG 59 NA Drosophila melanogaster 50 CG4982 FBgn0036598 FBtr0075469 3 1 1 61 3L 16294677 16294695 GTATTCGCTGTCCTGATCC 59 16294720 16294738 TATTCCACGTGCTCATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PDCD-5 FBgn0036580 FBtr0075483 1 1 1 176 3L 16224506 16224581 GGCACGACTTAATACCCTC 59 16224348 16224366 TATTTCACGGAGGACTTGC 59 NA Drosophila melanogaster 50 CG6244 FBgn0036531 FBtr0075502 2 1 1 84 3L 15801587 15801605 TTCGATTGTCCATTCTGCA 59 15801705 15801724 CGGTACAGGTAATTCTTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7255 FBgn0036493 FBtr0110881,FBtr0100360 1 2 3 131 3L 15301821 15301841 TTTAGAGTTCCCTTTGTACCG 59 15301932 15302037 AAGAAATACGGGTATACCCAC 59 NA Drosophila melanogaster 50 CG12316 FBgn0036483 FBtr0075651,FBtr0075652 1 2 2 101 3L 15128060 15128080 GACCATATTGAATCATCTGCG 59 15127562 15127997 GAACTGAGAACCACTTCGT 59 NA Drosophila melanogaster 50 CG13460 FBgn0036471 FBtr0114510 2 1 1 60 3L 15054441 15054460 GATCCTATGGATCCTATGGC 58 15054400 15054421 TTATTATTCCAGTAGCTGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL39 FBgn0036462 FBtr0075672 3 1 1 96 3L 14991963 14991981 TTGCAGCTTTATGTTGGGA 59 14991712 14991905 ACCTGATTTGATATTGGGTCC 59 NA Drosophila melanogaster 50 CG4613 FBgn0036427 FBtr0075725 1 1 1 143 3L 14513252 14513270 GTACAGGTCCATGATCGTG 59 14513056 14513074 TAGCCAAAGGACACAACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10743 FBgn0036376 FBtr0075814,FBtr0075813 1 2 2 102 3L 13507881 13507899 CTGCTATGAGGACAATTGC 58 13508024 13508044 CATCTTTAGGTTTAGCTCTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG34429 FBgn0085458 FBtr0112730 2 1 1 145 3L 13056703 13056721 GAGTCTGTGTCCTGAAGAG 59 13056882 13056900 CAGGTAGTCATTGTCCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 eIF-2beta FBgn0004926 FBtr0075968 3 1 1 194 3L 12518773 12519100 AAGACAAAGAGAACGACGAG 59 12518598 12518616 CAAAGGAGGTCTTCTTGGT 59 NA Drosophila melanogaster 50 Pop2 FBgn0036239 FBtr0076058,FBtr0076059,FBtr0076060 2 3 3 80 3L 11993787 11993865 TCAAGTTTAACCTGAGCGAG 59 11993726 11993745 GCTTCTTGAACTGAATTCCG 59 NA Drosophila melanogaster 50 viaf FBgn0036237 FBtr0076062 1 1 1 60 3L 11985631 11985651 GATTATGTCAACGAGGTAACC 58 11985591 11985609 CATACAGGTGGAGTACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 obst-G FBgn0036228 FBtr0076066 2 1 1 60 3L 11946338 11946359 TACTTCAAGAAAGTACTCTGGC 59 11946244 11946262 CATAAGGACGTCTTGAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7257 FBgn0036224 FBtr0076040 1 1 1 60 3L 11935259 11935277 CCAATTACCGTACCAAGCT 59 11935301 11935319 CGCAAAGCTTTCAATTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 chrb FBgn0036165 FBtr0076093 3 1 1 65 3L 11487795 11487814 CTCTTCATTGAGTTCGAGAG 57 11487953 11487973 CGGATCCACTTTAAAGTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6199 FBgn0036147 FBtr0076187,FBtr0076188 3 2 2 82 3L 11195966 11196054 TTAGACTTGGAAGAGACAAACC 59 11195905 11195923 AGAAACTGGTCGAAGAAGG 59 NA Drosophila melanogaster 50 Alg10 FBgn0052076 FBtr0076217 3 1 1 201 3L 11158742 11158761 GAATATCGTGTGGGTATGCA 59 11158989 11159007 GATCGAAGCGTAGAAACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14149 FBgn0036105 FBtr0076269 3 1 1 60 3L 10872509 10872532 CTCTATACTAGGTTTCACAGACAG 59 10872551 10872569 CTCCAGACCATCGATTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpr10 FBgn0052057 FBtr0076310,FBtr0076308,FBtr0076309 1 3 3 82 3L 10143594 10144086 ATCAGGATAAGGTGCTCAG 58 10143530 10143548 AATGGATTTGGTCTCCTCC 58 NA Drosophila melanogaster 50 dpr10 FBgn0052057 FBtr0076310,FBtr0076308,FBtr0076309 2 3 3 83 3L 10143594 10144087 CATCAGGATAAGGTGCTCAG 59 10143530 10143548 AATGGATTTGGTCTCCTCC 58 NA Drosophila melanogaster 50 nudE FBgn0036059 FBtr0114600,FBtr0113158,FBtr0076344,FBtr0113159 1 4 4 98 3L 9893399 9893533 CTCTCAAGCTCAAGTTGGA 59 9893595 9893613 GGTACACCTTCATGGTGTC 59 NA Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385 3 8 8 114 3L 9825956 9826035 GAGTTAACCGGGACTACAC 59 9826112 9826131 AGTCTTTCCCAAACTTAGCC 59 NA InUTR Drosophila melanogaster 50 CG3306 FBgn0036016 FBtr0076380 2 1 1 60 3L 9594753 9594771 GGATCCAGATACGTTGGTC 59 9594794 9594813 AAATGTAGACACCCATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34272 FBgn0085301 FBtr0112467 1 1 1 60 3L 9588220 9588241 GATGATTTATGCGATGAGTTCC 59 9588262 9588280 TCAGCTTTGTCCAAATGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF-4E FBgn0015218 FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487 3 7 7 96 3L 9393614 9393696 AAGAAGAACATTCGTCCCA 58 9393536 9393554 TATCCAGATCGGTCTTGGA 59 NA Drosophila melanogaster 50 CG5653 FBgn0035943 FBtr0076559 3 1 1 60 3L 8958225 8958243 GTTATCGTGGAGTTATGGC 57 8958183 8958201 ACAGGAGACTCTAGATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Prm FBgn0003149 FBtr0076593,FBtr0076594 3 2 4 144 3L 8732791 8732809 ATCATCCTGTACGAGACCA 59 8732580 8732684 CCTCATGAAGATCATCTCCC 59 NA Drosophila melanogaster 50 ergic53 FBgn0035909 FBtr0076626,FBtr0076625 3 2 2 124 3L 8529702 8529720 CATGAATCAGGTCAAGCAG 58 8530054 8530073 TTACGCTTAGGAACAATGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7066 FBgn0035869 FBtr0076707 1 1 1 65 3L 8298022 8298040 GAAATTGTTGTTCCTGGCC 59 8298122 8298140 ATAGTCGCATCTAGACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 Tsp66A FBgn0035786 FBtr0076860 2 1 2 82 3L 7459767 7460632 AATTCTGTTCGAACACATGC 59 7460677 7460695 CCATTAGGGCATTTACGGT 59 NA Drosophila melanogaster 50 sphinx1 FBgn0052383 FBtr0076865 1 1 1 60 3L 7431774 7431794 GTCAGCGATCATATAAAGTGG 58 7431734 7431753 TGGAATACTCACAGAATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lcp65Ae FBgn0020640 FBtr0077056 2 1 1 88 3L 6131091 6131109 TTGGAATCCGATGTTGGAC 59 6130961 6130980 TACTTCAACTGTCCCTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lcp65Af FBgn0020639 FBtr0077057 1 1 1 83 3L 6129608 6129626 GTTGGAACTGATGAGGAGG 59 6129543 6129561 GTAGGCGATGGAGTAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32412 FBgn0052412 FBtr0077080 2 1 1 92 3L 5894960 5894978 GTGCCATTCTGTTGAACAC 59 5894651 5894907 AGAATATGAGCATAAGTCCCAC 59 NA Drosophila melanogaster 50 Blimp-1 FBgn0035625 FBtr0077089 2 1 1 90 3L 5637721 5637844 CCAAATGTTAAGACTGAAGGAG 58 5637894 5637913 AATTAGAGGTTGGAATGCCT 59 NA Drosophila melanogaster 50 CG10672 FBgn0035588 FBtr0077179 3 1 1 145 3L 5133872 5133952 TGATGCCTTTGAGCTACTG 59 5133745 5133764 CTTTCGAGAACTTTGTCCTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG15023 FBgn0035548 FBtr0073332 3 1 1 72 3L 4461104 4461122 TTGTGATTACCTCGACGAC 59 4461050 4461068 TAAGTGGGTACTGGTTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS6 FBgn0035534 FBtr0073288 1 1 1 70 3L 4364986 4365004 AAGATCGCAGACTTGAAGG 59 4365038 4365056 TCCACCTTGAAGATGTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17746 FBgn0035425 FBtr0073094,FBtr0073093 2 2 2 93 3L 3238653 3238671 CACAAGTACGTTCTCAAGC 58 3238039 3238057 TGCGTAGCATAACGTAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 msn FBgn0010909 FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956 2 5 5 103 3L 2556719 2556800 GCAATAGAGATACGTTCCGT 59 2556635 2556654 AATACTTTGTCGTTTCGCTC 58 NA Drosophila melanogaster 50 CG5690 FBgn0035295 FBtr0072842 3 1 1 109 3L 1949143 1949162 TGCTGCAAGAATATCATCAG 58 1949233 1949314 GAGATTGGTCTCAGTTTCAG 57 NA Drosophila melanogaster 50 Aprt FBgn0000109 FBtr0089421,FBtr0089420 3 2 2 82 3L 1884242 1884334 GAGTACGGTATTGACACCT 58 1884178 1884196 GCTAGTAGATCGTCAACGA 58 NA InUTR Drosophila melanogaster 50 CG7971 FBgn0035253 FBtr0072808 3 1 5 144 3L 1661261 1661279 GATCATGTCTCCAAGACGG 59 1661074 1661093 GGTTTCAAGTTTCGGATTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG9192 FBgn0035193 FBtr0072734 2 1 1 60 3L 1237926 1237945 GTTTAATCCATACGGTGGTC 58 1237885 1237904 GTTATAGCCTCCAAGTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12030 FBgn0035147 FBtr0072556 2 1 1 137 3L 649360 649380 GTCAACTTCTATAGAGTGGAC 57 650291 650310 GTAGTACTGCAAAGGTATGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7047 FBgn0035103 FBtr0072535,FBtr0072534,FBtr0072536 2 3 3 135 3L 177251 177269 GATAAAGTGCAGAGTGTCC 57 177068 177152 ATACTCGATGGTCTCAGTG 58 NA Drosophila melanogaster 50 Atf-2 FBgn0050420 FBtr0072381,FBtr0072382 2 2 3 80 2R 20766554 20766574 GTACATAGTGGCCCTAATAGC 59 20766614 20766695 TTATGGAACCAAGTTACTCCG 59 NA Drosophila melanogaster 50 CG33988 FBgn0053988 FBtr0100033 3 1 1 214 2R 20588051 20588137 TACAGAAGAGATCAACGCG 59 20587794 20587812 GTAGCTAGACTTCTCCAGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG4589 FBgn0019886 FBtr0072347,FBtr0072348,FBtr0072349 3 3 3 82 2R 20398309 20398389 CGATATTCGTAAGGTGTTGGA 59 20398247 20398265 GCAGACTGATGAGTTCCTC 59 NA Drosophila melanogaster 50 CG13569 FBgn0034979 FBtr0072284 1 1 2 125 2R 20013241 20013260 CCTATGTCTACAAGACTGGA 57 20013078 20013153 AACTACGCTCTTACTCCAG 58 NA InUTR Drosophila melanogaster 50 Unc-89 FBgn0053519 FBtr0113464 3 1 2 81 2R 19900368 19900445 AAAGTCAAGATGCTTTGTGC 59 19900306 19900327 GAACTCTAGTATATCGATGGGC 59 NA Drosophila melanogaster 50 CG3105 FBgn0034950 FBtr0072160 2 1 1 81 2R 19879127 19879205 CGTTAATGAAGCCAAGCAC 59 19879250 19879268 CTCGTGGTTACTCACTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 egl FBgn0000562 FBtr0114586 2 1 1 107 2R 19623914 19623932 TATGGATCTGACAGAGGAC 57 19623763 19623843 TCACTTTGATCTTTGCTGG 57 NA Drosophila melanogaster 50 CG4019 FBgn0034885 FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103 1 4 4 213 2R 19495764 19495782 TCGAGTTCGTAATCACCTC 58 19495489 19495507 TAGATCCAGTTGCTCTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG30414 FBgn0050414 FBtr0072032 2 1 1 184 2R 19272381 19272400 TAAACTCAGGAGAATACGCT 58 19272161 19272234 GGACGTAGTCTGAGTACTG 58 NA Drosophila melanogaster 50 CG30193 FBgn0050193 FBtr0071948,FBtr0071949,FBtr0071946,FBtr0071944 1 4 7 80 2R 18813126 18814633 GGCTTATAATATTGTTCTGCGG 59 18814673 18814692 ATTCCTTGACATCCTTGGTC 59 NA Nonspecific Drosophila melanogaster 50 CG30187 FBgn0050187 FBtr0071997 1 1 1 80 2R 18804775 18805208 GCACTTATTCTAGACCAACAG 58 18804715 18804735 TATAGTTCCATTATCGGGAGC 58 NA Drosophila melanogaster 50 CG9825 FBgn0034783 FBtr0071893 3 1 1 90 2R 18725371 18725446 CGAACTTTCCGGAATACGA 59 18725500 18725518 CCAAGGAATTGCGTTAGGA 59 NA Drosophila melanogaster 50 Obp58c FBgn0034769 FBtr0071920 2 1 1 96 2R 18593778 18593796 TGTTCACTGAAAGGTTTCC 57 18593640 18593658 ATGGAGGTATTCTCTTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG30401 FBgn0050401 FBtr0071731 1 1 1 60 2R 17873721 17873739 ACATTAATGGTCATCCGGT 58 17873679 17873697 GATGTAGCTGCTGAATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089710,FBtr0089703 1 2 9 129 2R 17399440 17399460 CCGTCTAGATCCTACAAACTC 59 17399675 17399908 GAAGTACTTGACGTAGCCC 59 NA Drosophila melanogaster 50 Fkbp13 FBgn0010470 FBtr0071702,FBtr0071703 3 2 2 70 2R 17375559 17375577 AATGTGTTCAAGGAGATCG 57 17375334 17375526 TTTAGATACTCGCTGACCTC 58 NA DesignRelaxed Drosophila melanogaster 50 Sara FBgn0026369 FBtr0071641,FBtr0071642 2 2 2 116 2R 17373768 17373847 TTATTAAGTGCGAGGACTGG 59 17373926 17373944 AAAGATCGAGAAGTGGCAG 59 NA Drosophila melanogaster 50 CG30394 FBgn0050394 FBtr0071614,FBtr0071613 2 2 2 124 2R 17209252 17209325 TACAGAAAGGGTCATACGG 58 17209146 17209164 ATTATAAGCTCCACGGAGG 58 NA Drosophila melanogaster 50 CG34396 FBgn0085425 FBtr0112645 1 1 2 119 2R 16987563 16987730 AACTATAGGTTACGGCCAC 58 16987813 16987831 AATAACTTGCCCAGATCGG 59 NA Drosophila melanogaster 50 Obp57a FBgn0043535 FBtr0086294 2 1 1 60 2R 16393084 16393103 TGCCTACGTCTATAAATTGG 57 16393124 16393144 GAACTTGATGACTGAATGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10737 FBgn0034420 FBtr0086587,FBtr0100282 1 2 5 81 2R 15064177 15064195 GATTAGTCACAAGCAGTGC 58 15064237 15065333 GAGTTTAGTTAGTTCCATGGAG 58 NA Drosophila melanogaster 50 CG15109 FBgn0034416 FBtr0086576,FBtr0100137,FBtr0086575 2 3 4 145 2R 14947119 14947138 ACAAGATGAACTACTTGCTG 57 14947337 14947355 CAGTGAAGCAGTATTGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15080 FBgn0034391 FBtr0086613 1 1 1 128 2R 14680407 14680482 AAAGAATCCACCGTGTCTC 59 14680574 14680592 GAAGCTGTTCGTGTTTGAG 59 NA Drosophila melanogaster 50 CG15086 FBgn0034374 FBtr0086651,FBtr0086649,FBtr0086650,FBtr0086648 1 4 4 60 2R 14567640 14567659 CAGGATCCTTACTACCAACG 59 14567543 14567563 ATGATCCGTAGTTCTGATACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10924 FBgn0034356 FBtr0086699,FBtr0113093 3 2 2 60 2R 14421136 14421156 GGATGAAGTTCGATAACAAGG 58 14421178 14421196 CCAAAGAATCCATTCTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED9 FBgn0034311 FBtr0086748,FBtr0086747 3 2 2 119 2R 14055534 14055552 GAGAGCTATCCCATGAGAC 58 14055635 14055722 AACGAAGGATTTGAAACGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG5756 FBgn0034301 FBtr0086786 3 1 2 106 2R 13991256 13991513 GATTTACGCACACGTTTCC 59 13991168 13991186 CAAAGTTGGTGCTATCAGC 59 NA Drosophila melanogaster 50 CG4847 FBgn0034229 FBtr0086937,FBtr0086934,FBtr0086933 3 3 5 199 2R 13400212 13400290 GACTTCTTGAGCCAATCTG 58 13400453 13400471 TTCAGACCGGTCAATTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6429 FBgn0046999 FBtr0087044 1 1 1 60 2R 12760946 12760967 TTATATGGTGAAGTACGGACAG 59 12760987 12761006 ATAATCGTAACAGTCCTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34459 FBgn0085488 FBtr0112765 2 1 1 71 2R 12713706 12713724 GAAGTCCAGGAAGCTAGTG 59 12713759 12713777 ATTCATATTGGCCTCCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hmgs FBgn0010611 FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146 1 5 5 60 2R 12227687 12227705 CAGCAGAAGGATACTTCCA 58 12227727 12227747 GGAATAGGATAGCATCGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rho1 FBgn0014020 FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216 3 7 7 83 2R 11993292 11993372 ACACAATTCGGGATCTAGC 59 11993419 11993437 AGGCATTAATCTTCTCGGC 59 NA Drosophila melanogaster 50 Dg FBgn0034072 FBtr0087258,FBtr0087257,FBtr0087256 1 3 3 100 2R 11972593 11972678 TTTATGGCCTACCTCTGGA 59 11972511 11972529 ACTTATCTCCACGGTTTCC 58 NA Drosophila melanogaster 50 CG8299 FBgn0034052 FBtr0087291 3 1 1 80 2R 11828680 11828698 TGTTAAGGTCAGCAAACTG 57 11828618 11828636 CGAGTGATGATCAAACCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sli FBgn0003425 FBtr0087304,FBtr0087302,FBtr0112831 3 3 5 138 2R 11773781 11773799 GACCGTGATATACGAGACG 59 11772978 11773607 ATTGTTGGAGATGTCCAGTC 59 NA Drosophila melanogaster 50 kn FBgn0001319 FBtr0112810 2 1 3 100 2R 10681341 10685773 GTTGACCAGAGCAATTTGG 59 10681259 10681278 TATAAGGCGATCACGAAGTG 59 NA Drosophila melanogaster 50 Sec61beta FBgn0010638 FBtr0087498 2 1 1 74 2R 10506666 10506747 GTATCAAAGTTGGTCCCGT 59 10506785 10506803 AAATGTGCAGCATGAAGAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG8613 FBgn0033924 FBtr0087546 2 1 1 81 2R 10241976 10242051 AAGAATGCATCGCAAATCG 59 10242094 10242114 GTGTAGCTTTGTAGTAGTCCA 59 NA Drosophila melanogaster 50 Ih FBgn0028428 FBtr0100370,FBtr0100369,FBtr0100371 3 3 4 107 2R 10179873 10184210 GGGAGGAGGTCTATTTCCT 59 10184281 10184299 CTAAGAACTGCAAGCAACC 59 NA Drosophila melanogaster 50 CG6145 FBgn0033853 FBtr0087687,FBtr0087685,FBtr0087686 3 3 3 60 2R 9426355 9426491 GCTAGTGACCTTTAAAGATGG 58 9426315 9426334 GCAGACGATAAAGTCAATCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG6145 FBgn0033853 FBtr0087687,FBtr0087685,FBtr0087686 1 3 3 60 2R 9426355 9426492 AGCTAGTGACCTTTAAAGATGG 59 9426316 9426335 CAGACGATAAAGTCAATCCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG32843 FBgn0052843 FBtr0087755 1 1 1 88 2R 9162690 9162708 TGAATCTGATCTCCGAGGT 59 9161475 9162641 CTTCAGGGATTTGAAATAACCC 59 NA Drosophila melanogaster 50 CG17041 FBgn0033822 FBtr0087749,FBtr0087751,FBtr0113080,FBtr0087750 3 4 4 222 2R 9151042 9151060 ATAATGTGGCAAGACCCTC 59 9151380 9151398 TGTTCTCAATGGTGTTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 Or49b FBgn0028963 FBtr0087781 3 1 1 97 2R 8731548 8731631 CTTTATGCTGATTATCGTCAGC 59 8731689 8731707 CATACCAATAGAGGGCCAG 59 NA Drosophila melanogaster 50 sca FBgn0003326 FBtr0087855,FBtr0087856 3 2 2 158 2R 8687287 8687506 AAGAATAAGCTCACCCACC 59 8687628 8687646 GATAATGGCCTCGTACTGG 59 NA Nonspecific Drosophila melanogaster 50 Sin3A FBgn0022764 FBtr0087887,FBtr0087889,FBtr0087890,FBtr0087888 1 4 4 81 2R 8467283 8467301 CTCGAATACGTTCGAGGAC 59 8467118 8467238 GGAGACAACCTTATCCAGC 59 NA Drosophila melanogaster 50 CG30049 FBgn0050049 FBtr0087906 2 1 1 80 2R 8243985 8244003 GAGGAGAATCCTCTACAGG 57 8244046 8244114 CAAATTGATAACTGCCTTGC 57 NA Drosophila melanogaster 50 CG8841 FBgn0033713 FBtr0087964,FBtr0087965 2 2 3 85 2R 8212163 8212182 CATACTGTTGCTCCTATCGG 59 8212027 8212045 CAGGTATATCCATGGGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13195 FBgn0033648 FBtr0088080 2 1 1 60 2R 7589872 7589890 GGACTCAAGGTCTTAACGA 58 7589830 7589849 TTATTGGAGATAAGAAGGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34228 FBgn0085257 FBtr0112421 1 1 1 60 2R 7539685 7539704 AAGTTTGAATACAGATGCCG 58 7539727 7539745 TTCCAGTACGGGACTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 etaTry FBgn0011554 FBtr0088163 1 1 1 60 2R 7228564 7228583 ACTATGGATAACGACATTGC 57 7228523 7228541 TAAAGCTATCCAAGGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr47Ef FBgn0033603 FBtr0088186 1 1 2 204 2R 7157112 7157130 ATAGCCAAATCTCTGGCTG 59 7156783 7156880 CTCCTGATCCATATCCACC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG34225 FBgn0085254 FBtr0112418 3 1 1 60 2R 7133203 7133222 CAGTGGATGGAGTAATTCCT 58 7133241 7133263 CTACCACCAGTAACTACTATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13226 FBgn0033594 FBtr0088108 3 1 1 60 2R 7132088 7132111 CTACGGTTATAACTATGGATACCC 59 7132130 7132148 TCTGTAGTAGTTCTGCCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34223 FBgn0085252 FBtr0112416 3 1 1 72 2R 7123572 7123592 GTCTTTAGTCGTCTTCAACCT 59 7123626 7123644 TGGTGGTAGTTATACCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30490 FBgn0050490 FBtr0088209 1 1 1 60 2R 7003948 7003966 GCATCAACAAGCTTACTGG 59 7003906 7003926 CGATGGGAATAATGATCTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pfk FBgn0003071 FBtr0088421 3 1 3 109 2R 6000666 6001639 GTCATTGCGGTTACTTAGC 58 6001712 6001730 CTTGACACAGATCTCGTCC 59 NA Drosophila melanogaster 50 egr FBgn0033483 FBtr0088405 2 1 2 99 2R 5970831 5970927 GGTGAATCTCTTCTTTCAGC 58 5970989 5971087 CATGGTAGCCCATACTTCC 59 NA Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 1 9 9 87 2R 5738879 5738966 CCGTTAAGGAGATCCATGTC 59 5738811 5738829 ATATCGATGACAGTTCCGG 58 NA Drosophila melanogaster 50 CG1814 FBgn0033426 FBtr0088523,FBtr0088521,FBtr0088522 1 3 3 80 2R 5468497 5468576 AATCTACTACGAGGGTTCG 58 5468620 5468638 TGATCTCCGAAATAGAGCA 57 NA Drosophila melanogaster 50 Cyp4p1 FBgn0015037 FBtr0088592 3 1 1 96 2R 5128337 5128421 CAGTATTTGTGAAACCGCC 59 5128478 5128499 GAAGCATTCTTCAATCTGACTG 59 NA Drosophila melanogaster 50 CG8247 FBgn0033348 FBtr0088677 1 1 1 80 2R 4808338 4808356 AAGCTACCCACAAATACCT 58 4808213 4808296 CCGTAAACTTTCTCTTCTCAG 58 NA Drosophila melanogaster 50 PGRP-SC1a FBgn0043576 FBtr0088707 1 1 1 165 2R 4597331 4597349 GTCTATGTCGTCTCCAAGG 59 4597478 4597496 CCATGTGGTAGTTCTGGAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30355 FBgn0050355 FBtr0088726 1 1 1 60 2R 4566860 4566880 AGATCAACCGAAAGAGATGAC 59 4566820 4566839 TATCATCCACAACATTGCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30364 FBgn0050364 FBtr0088772 3 1 1 60 2R 4249567 4249587 CAAGAGAATTGTGCTTATGCC 59 4249527 4249548 GTGAATAGTTCGACAAGTATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mlh1 FBgn0011659 FBtr0088790 2 1 1 60 2R 4058505 4058524 CGATGAGGTTTACAAGTTCG 58 4058547 4058565 TTTGGCCGAATAGTTAACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Odc1 FBgn0013307 FBtr0088863 3 1 1 90 2R 3893656 3893674 GTACTATCTGAATGACGGC 57 3893728 3893876 TGCATTGTCCAGATAATGC 58 NA Drosophila melanogaster 50 CG1600 FBgn0033188 FBtr0088958,FBtr0088957,FBtr0088956 1 3 3 192 2R 3414718 3414736 TATCACTTTGCCACAACTG 57 3414477 3414495 CAAAGTCAATGACCACGTC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995 1 9 9 157 2R 3355133 3355208 AGAAGTTGTCATCAGCTCG 59 3354994 3355012 GTAGTAGTTGGTCAGCACC 59 NA Nonspecific Drosophila melanogaster 50 CG33914 FBgn0053914 FBtr0091918 2 1 1 79 2R 2924676 2924694 ACACAAACATGAACCACAC 58 2924554 2924572 GGAGACTTCGGTATTTGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG9455 FBgn0033113 FBtr0086162 2 1 1 105 2R 2770259 2770277 CTCTTTACCTCGCAAAGTG 58 2770345 2770433 TCTTCATGAAACTGACTGCT 59 NA Drosophila melanogaster 50 koi FBgn0033107 FBtr0086159 2 1 1 82 2R 2704200 2704218 GAATAGAATCAGCTCCTCG 57 2704327 2704345 GTAATCGCCGAACAATACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15234 FBgn0040673 FBtr0089698 3 1 1 150 2R 2495743 2495761 AATTAACGCATTGGACGTC 58 2495552 2495570 CTTCAAGTTTCTGCAACGA 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG3107 FBgn0033005 FBtr0086078,FBtr0086077,FBtr0111280 1 3 3 60 2R 980669 980688 TCATCGGATACTAAGGACAC 58 980711 980729 AGTCTTCAACTCGAAGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17715 FBgn0041004 FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246 1 6 6 93 2L 22742091 22742164 ATAATGATCATGGCGGGTG 59 22742219 22742239 TTATGGTGTTTCCTAGTCCTG 59 NA Drosophila melanogaster 50 CG41434 FBgn0084001 FBtr0111262 3 1 1 60 2L 22038813 22038833 ATACCCTTACGTACTACTGGA 59 22038854 22038873 ATTCTTCTCTTGCGATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3305 FBgn0032949 FBtr0085896 3 1 1 228 2L 21574898 21574916 CGACAACAACTGAGAAACC 58 21575107 21575977 GTAAAGTTTCCCTCCCTAGC 59 NA DesignRelaxed Drosophila melanogaster 50 Mio FBgn0032940 FBtr0081524,FBtr0081527,FBtr0081528,FBtr0081526,FBtr0081525 3 5 5 84 2L 21286543 21286561 AGTCTTGATGAGCTACGTC 58 21286414 21286496 TATTTGTAACAGCTGGACGA 59 NA Drosophila melanogaster 50 Hr39 FBgn0010229 FBtr0081481,FBtr0081480,FBtr0081479 2 3 4 153 2L 21256008 21256026 AAGATAACCCTATCGCAGG 58 21257042 21257114 ACTCTGTCGTATCTGACTG 58 NA Drosophila melanogaster 50 CG31674 FBgn0051674 FBtr0081423 1 1 1 173 2L 20832250 20832268 GAAAGAAACGGCAGTACTG 58 20832456 20832674 GGAGTAACCACAACATTGTC 58 NA Drosophila melanogaster 50 CG34051 FBgn0054051 FBtr0100106 3 1 1 116 2L 19960589 19960674 ATATTTCGAACTGGAGCAGAG 59 19960493 19960514 CACCGTCAAAGAATAACTTCAG 59 NA Drosophila melanogaster 50 TepIV FBgn0041180 FBtr0081254 3 1 1 108 2L 19553195 19553213 TTATCCCTACAGGGAACCA 59 19553285 19553371 GATCTTGAGGTTCCAGACG 59 NA Drosophila melanogaster 50 CG17350 FBgn0032772 FBtr0081199 2 1 1 91 2L 19382123 19382207 AAACGAAAGAGTCCAAGGA 58 19382262 19382280 GATTTCGAACGTGATGTCC 58 NA Drosophila melanogaster 50 Arr1 FBgn0000120 FBtr0081030 2 1 1 131 2L 18079716 18079967 ACCACACTTATTGCCAGTC 59 18080059 18080080 GTGCATCAGAATAAATGGTAGC 59 NA Drosophila melanogaster 50 CG13258 FBgn0032582 FBtr0080853 2 1 1 74 2L 16292363 16292381 ATATGCCAACTGATGTCCG 59 16292307 16292326 CGATGACTCCAGATAATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tim17b2 FBgn0020371 FBtr0089699,FBtr0089700 1 2 2 65 2L 15485207 15485225 CAATGATCGAGGGCTTAGG 59 15485254 15485272 GTTCACGATTTCGGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31855 FBgn0051855 FBtr0080467 1 1 1 67 2L 13369471 13369489 AACATGGAATTCGAACGTC 58 13369520 13369538 CTCTGAATGCTCATCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15639 FBgn0032502 FBtr0080477 3 1 1 128 2L 13305735 13305753 ATCCGATAAAGATGAGCCA 58 13305560 13305580 CCATCATGGGATAGATAGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6043 FBgn0032497 FBtr0089911,FBtr0089910,FBtr0114471,FBtr0113039,FBtr0113040 2 5 5 141 2L 13276279 13276383 CAACAACGATATGATGCCC 58 13276488 13276506 TTTCAGGTGTTGTCATTGC 58 NA Drosophila melanogaster 50 CG5867 FBgn0027586 FBtr0080449 2 1 1 90 2L 13238890 13238908 GACCAAACTGGAGACTGAG 59 13238962 13239042 CAAGATGACATCGTTCAGC 58 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090029 1 2 17 195 2L 12726933 12726951 TATATCAAGAGCGTTGGCA 58 12727110 12736604 TATAGCTGAAGACTTGGCC 58 NA Drosophila melanogaster 50 rho-6 FBgn0032415 FBtr0080360 3 1 2 110 2L 12131373 12131391 GATCTTCAAACCGGAATGG 58 12131055 12131300 CCTATAAAGCACTGAAAGCA 57 NA Drosophila melanogaster 50 CG5317 FBgn0032404 FBtr0080296,FBtr0113037 2 2 2 60 2L 12056760 12056778 CGATTCCAATCCCAAACTG 58 12056801 12056820 CTTGTCGAAGATCTTCTTGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 JhI-21 FBgn0028425 FBtr0089655,FBtr0089656 2 2 2 111 2L 12054492 12055096 TATTTACACCGAATCCGTG 57 12054399 12054417 AGATCTTGTGATGCATGTG 57 NA Drosophila melanogaster 50 CG14934 FBgn0032381 FBtr0080275 1 1 1 105 2L 11848792 11848810 AGAAGTGGTTAATCGCAGG 59 11848950 11848968 GATGTCAACCAGTTCAGTG 58 NA DesignNoJunction Drosophila melanogaster 50 salr FBgn0000287 FBtr0080235,FBtr0080236 1 2 2 119 2L 11372325 11372343 AACTTCAGTTCGAGTTCCG 59 11372424 11372533 CATATGGACCTTGAGATTCCC 59 NA Drosophila melanogaster 50 CG16833 FBgn0026147 FBtr0080151,FBtr0080152,FBtr0080150 2 3 3 80 2L 10993660 10993748 AAGACCGGAATGAGTATGTG 59 10993790 10993809 CATCCTCGGCTATGATAAGG 59 NA Drosophila melanogaster 50 ial FBgn0024227 FBtr0080180 1 1 1 112 2L 10857110 10857128 CATGGAGATCTCCTACCCA 59 10856956 10856974 AATGGGTCATCACATCCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17085 FBgn0032309 FBtr0080141 2 1 1 176 2L 10851680 10851699 ATATTGAGGTTAGTTCGCGG 59 10851838 10851856 GAATCTGTATATGCCGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17127 FBgn0032299 FBtr0080136 1 1 1 60 2L 10771192 10771211 ATCAATCTCTTCGAGATCCT 57 10771234 10771252 ACTGCAGGTTGTTTATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CHIP FBgn0027052 FBtr0080027 3 1 1 122 2L 10438642 10438660 AAATGTACACGATGAGCAG 57 10438805 10438892 ACTTCACGTTTCTTTCGAC 58 NA Drosophila melanogaster 50 CG13139 FBgn0032230 FBtr0080002 3 1 1 159 2L 10365532 10365550 ATCGCCCTAATGAATTCCG 59 10365673 10365781 CCAGCATGAATCTGAATGC 59 NA Drosophila melanogaster 50 CG4995 FBgn0032219 FBtr0079989,FBtr0079990 3 2 3 241 2L 10322826 10323681 AATGATAAGGATCCCTACCG 58 10323953 10323971 TCTCTTTGCACTATCGTCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG5640 FBgn0032207 FBtr0080075 1 1 3 97 2L 10277916 10278258 ACTCCGAAGCTTTATCAGC 59 10277837 10277855 ATAAGCAACGCCTATTCCA 59 NA Drosophila melanogaster 50 Srp54 FBgn0024285 FBtr0079875 3 1 1 61 2L 9913817 9913836 CCATGACCATTGTGAAAGAG 58 9913859 9913878 TCCAATTACCGGATCAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4036 FBgn0032149 FBtr0079870 1 1 1 60 2L 9791082 9791101 CATGGTCCTACTGTATCCAG 58 9791124 9791142 TGGACATGATTGGTATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ggamma30A FBgn0028433 FBtr0079796,FBtr0079797,FBtr0079795 2 3 3 82 2L 9272595 9291061 AATCCATAGCAGAAATGCG 58 9291107 9291125 ATTGTTCTTCTTATCCGGC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 alien FBgn0013746 FBtr0079781,FBtr0079780 3 2 2 117 2L 8995734 8995811 CTAGATGACACAATCAAGGGA 59 8995637 8995655 ATTGGATTTGGTTGGACCA 59 NA Drosophila melanogaster 50 Cyp4d21 FBgn0031925 FBtr0079471 3 1 1 90 2L 7606643 7606663 CTTTACTGACAAGGTCATTCG 58 7606715 7606793 ATCGTCTCCCATTATCAGC 58 NA Drosophila melanogaster 50 CG5261 FBgn0031912 FBtr0079445,FBtr0079444 3 2 2 103 2L 7428203 7428285 TAAGCTCAACGAAGGTGAC 59 7428351 7428370 CCTGGATGAGAATCTTAGCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13993 FBgn0031776 FBtr0079191 3 1 1 111 2L 6069481 6069568 CGACACAAGAGTTTACCAG 58 6069643 6069661 CAGTTCTATCGCTTTGTCG 58 NA Drosophila melanogaster 50 bchs FBgn0043362 FBtr0079144 2 1 1 80 2L 5912388 5912470 CTAAGCGTCAGTTTCTCTG 57 5912513 5912532 GGCAATACTGTATAGTAGCC 57 NA Drosophila melanogaster 50 CG14005 FBgn0031739 FBtr0079160 2 1 1 60 2L 5801332 5801350 CGCAGTAGTGAAGACAGAG 59 5801290 5801311 GTATTCAATATTCACCAGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9171 FBgn0031738 FBtr0079162,FBtr0079161 1 2 2 114 2L 5770099 5770117 ATTCTGGCTTCAGACATCG 59 5769934 5770021 ATGGAAATACTCTGGGTGC 59 NA Drosophila melanogaster 50 CG11147 FBgn0031734 FBtr0079165,FBtr0079166 1 2 2 80 2L 5735111 5735129 TCCAGGAACCAATCTTTGG 59 5734813 5735068 AGAAGACCATGGTCATTACC 59 NA Drosophila melanogaster 50 CG14017 FBgn0031721 FBtr0079105,FBtr0079104 2 2 2 60 2L 5554211 5554229 GTGCTTCTATTTCAGCGAG 58 5554251 5554271 CTCTAGAAGTGCCATAGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14014 FBgn0031718 FBtr0114511 3 1 1 60 2L 5550713 5550733 GATCTTCATCTTTAACTCGCC 58 5550673 5550691 TTTCTGGTACACGATCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Oscillin FBgn0031717 FBtr0079102,FBtr0079101 2 2 2 153 2L 5548088 5548173 GATGAGTATGTGGGACTGG 59 5548290 5548308 CCTCGAACTTATTGCACTC 58 NA Drosophila melanogaster 50 hoe2 FBgn0031649 FBtr0077394,FBtr0114514 1 2 2 80 2L 4935313 4935331 TTTGGATTTCTGACTGTGC 58 4935174 4935271 TGGAAGTATATCCTGGAACAC 58 NA Drosophila melanogaster 50 Bsg25A FBgn0000227 FBtr0077423 3 1 1 61 2L 4683630 4683648 GTATCAAGAAACCGGTGAC 58 4683587 4683605 GAATTCGAAACCAGGACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ine FBgn0011603 FBtr0077448,FBtr0077446,FBtr0077449 2 3 4 142 2L 4473965 4474340 TAGTCTCAGGTTATCTTCCAG 58 4473843 4473861 GAAATGATAGGAACTGCCG 58 NA Drosophila melanogaster 50 CG31958 FBgn0051958 FBtr0077495 1 1 1 66 2L 3786137 3786155 GAGATGATACGCGAGTACG 59 3786185 3786203 TCATGTTGTTGGACTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bowl FBgn0004893 FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493 2 4 4 81 2L 3780517 3780537 GCCCTATTCCTGTGATATCTG 59 3780577 3781922 CTCCTTGGAGTGAATATACCTG 59 NA Drosophila melanogaster 50 CG17262 FBgn0031499 FBtr0077666 3 1 1 85 2L 3039325 3039343 TGCTAAAGGTCCATCTGAG 58 3039194 3039277 CGAAATAAGGCAGTACAACC 58 NA Drosophila melanogaster 50 CG3119 FBgn0031466 FBtr0077692 3 1 2 105 2L 2837273 2837350 GATACGTACGTGGTCATGG 59 2836172 2837204 GCAGAAGCACATTGTATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Iris FBgn0031305 FBtr0077986 1 1 1 60 2L 1133240 1133258 CAATGGCGTAATCCAACTG 59 1133198 1133216 CATATGATCGTTGATGCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15824 FBgn0031292 FBtr0078029 2 1 1 92 2L 884177 884266 CGATACAGAAACACCAATCG 59 884104 884122 CTGTATAACCAGCAGGAGC 59 NA Drosophila melanogaster 50 Plc21C FBgn0004611 FBtr0078047,FBtr0078048,FBtr0078051,FBtr0078050 3 4 5 138 2L 344368 344386 CGAAAGAAGCATGACAAGG 59 344486 344571 GCGGAGAAAGACAATTAAGAC 59 NA Drosophila melanogaster 50 smo FBgn0003444 FBtr0078129 3 1 1 64 2L 280010 280028 CAATTGAGACTTGGAAGCG 59 280125 280143 TTTCACTTCTTCGACCACC 59 NA DesignNoJunction Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437 1 6 10 94 2L 110793 110811 GAGATCACGTCTAAGGCTG 59 110869 111916 AAATCGAAACCCTTGGAGG 59 NA Drosophila melanogaster 50 CG31973 FBgn0051973 FBtr0113415 1 1 4 93 2L 38598 38618 CGATGGTATTATTCACCAAGC 59 38079 38544 TTCTTGAGAACTATAGGCGG 58 NA Drosophila melanogaster 50 pncr004:X FBgn0047095 FBtr0091949 2 1 1 94 X 19068655 19068673 CCTTTCTGAAGAGTCCCAC 59 19065308 19068598 TTATCGAGGGTATCTTGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tty FBgn0015558 FBtr0077224 1 1 2 163 X 21203386 21204059 AAACTACTCCAAGACCCTG 58 21203241 21203259 CTCCTCCATTCTGTAGACC 58 NA Nonspecific Drosophila melanogaster 50 CG1314 FBgn0031134 FBtr0077286 1 1 1 60 X 20739704 20739725 TCTACCCAATATCTACAAGGAC 58 20739665 20739683 CTTCCACAGCATTATCAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14213 FBgn0031047 FBtr0074743 1 1 2 79 X 19533365 19533383 ATATGAATCCTCAGCAGCA 58 19533426 19533496 ATTGATCCACTGGTACACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34401 FBgn0085430 FBtr0112653 1 1 1 81 X 18772012 18772092 CAGTCTATCAAGCGATCGA 58 18772137 18772155 GTCATTTGGAGTTGCTCTG 58 NA Drosophila melanogaster 50 CG7053 FBgn0030960 FBtr0074635 1 1 1 60 X 18686501 18686519 AAGTTTGACTACTCCACCT 57 18686543 18686561 TCTTCTTCATGGCGTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6867 FBgn0030887 FBtr0089574 3 1 1 86 X 17922030 17922119 CTGACTGTGGAACTCTACTC 59 17922167 17922186 ATTGTCGGAGATTAAACGCT 59 NA Drosophila melanogaster 50 CG12991 FBgn0030847 FBtr0074448,FBtr0074449 1 2 2 114 X 17492121 17492140 CATTGGGATCGTACTGTACC 59 17492217 17492312 ATCCGAATTGTCACTCACC 59 NA Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 2 7 7 80 X 16269992 16270010 ATCACCATGTATCGAAGCG 59 16270054 16270134 TCCATTTCACCTCGTTCTC 59 NA Drosophila melanogaster 50 Cyp1 FBgn0004432 FBtr0074238 2 1 1 60 X 16214257 16214276 TCTATAACCCTAGCTTCGTC 58 16214216 16214234 GAATTCCAAACTGCAACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9914 FBgn0030737 FBtr0074240 3 1 1 109 X 16201327 16201345 ACATCGATAGCGTGATGAG 59 16201236 16201255 GTAGCGTTCGAAATAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8184 FBgn0030674 FBtr0074082 2 1 1 80 X 15620696 15620774 CAATGCCTTATCAAGGTTCC 58 15620817 15620835 CTCGCATCATACCAAATGG 58 NA Drosophila melanogaster 50 RpS15Aa FBgn0010198 FBtr0073792,FBtr0073795,FBtr0073793,FBtr0073794 2 4 4 119 X 13230101 13230119 CAGTTTGGTTACGTTGTGC 59 13230000 13230018 GATGCGAACTTGGTTTCTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 gd FBgn0000808 FBtr0073583 2 1 1 81 X 11880505 11880524 ATCCCGACTTTAACAGTCAG 59 11880321 11880463 GTGTTAAATCGAACTTCGTCC 59 NA Drosophila melanogaster 50 CG1552 FBgn0030258 FBtr0073397,FBtr0073396 2 2 2 117 X 10947114 10947134 GAGAACAATCACATAATGCCC 59 10946802 10946820 AATAAACCGGACAGCAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 BCL7-like FBgn0026149 FBtr0071358 1 1 1 69 X 9251291 9251606 TAACACCTGTTTCTCCGTC 59 9251639 9251657 CTCAGAGAAGGGCATACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2120 FBgn0030005 FBtr0071154 3 1 1 153 X 8030081 8030099 ATTGGAACTTGTGAATGGG 57 8030284 8030302 TTCCGAGAATCTTCTGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CheA7a FBgn0029948 FBtr0071055 2 1 1 97 X 7272421 7272533 GCAGAAGATTGTTCTCATGG 58 7272593 7272611 TAATGAACTGACAGAACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14427 FBgn0029931 FBtr0071010 2 1 1 72 X 6934976 6934994 AATCCTGCGGTTACTACAC 59 6935030 6935048 ATCTCCTCGTCATTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12543 FBgn0029872 FBtr0070919 1 1 1 93 X 6378100 6378118 TTTGTGGTCGATAACGGAG 59 6377948 6378045 CAAAGTGTCCTGAAATAGCTG 59 NA Drosophila melanogaster 50 CG12729 FBgn0029816 FBtr0070819 1 1 1 60 X 5739854 5739873 GTGAATTCCACCTGTAAGTC 58 5739896 5739914 TTATGAACTTGTCCAGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3323 FBgn0029750 FBtr0070758 3 1 1 207 X 5199537 5199555 AGATACGCCAGTTAGATCG 58 5199272 5199366 CGATTGCTGTTGTTAACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3546 FBgn0029716 FBtr0070679 1 1 1 60 X 4453281 4453300 CAGAGGAGAATCCAAATCAG 57 4453323 4453341 TTCTTGATCACTTCCACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fas2 FBgn0000635 FBtr0070666,FBtr0070667,FBtr0070665 3 3 3 60 X 4048783 4097238 GCTGCTCTTTAATAGAACTGAC 59 4048744 4048763 TGTTTGGGATAAATCTCCAG 57 NA DesignRelaxed Drosophila melanogaster 50 fs(1)Ya FBgn0000927 FBtr0070485 1 1 1 81 X 2620218 2620236 GATGAGTTCCATGATGCGA 59 2620281 2620299 CTTATCCGAATCCCTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 east FBgn0010110 FBtr0070326 3 1 1 100 X 1912033 1912744 ACGAGAACGAAGATTCGTC 59 1912808 1912826 CGGAATGAGGATCTTCTCC 59 NA Drosophila melanogaster 50 CG3587 FBgn0023521 FBtr0070321 1 1 1 80 X 1835080 1835165 TACTTATAATGCACCGCTG 57 1835209 1835227 AGGATCTCCTTGATGATCG 58 NA Nonspecific Drosophila melanogaster 50 CG11409 FBgn0024366 FBtr0070238 3 1 1 60 X 1226350 1226369 GGGAACCTCTACTCATTGAG 59 1226309 1226327 ATGTCTATGTTCGGATCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11663 FBgn0029539 FBtr0070164 2 1 1 201 X 788774 788792 ATGCAAACCCAGATAACAC 57 788957 788975 TGTTACTGGTCGTTGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40847 FBgn0085775 FBtr0114226 1 1 2 93 U 2293119 2293202 GGAATCCGTACCAGAACAG 59 2293044 2293062 ATAACTTCCTCGGAGAGCA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450 1 8 8 166 4 157780 157853 TCGAGCAACCTTAAGACAC 59 158041 158059 TAAACCAATTGCTTGCAGC 59 NA Drosophila melanogaster 50 PH4alphaEFB FBgn0039776 FBtr0085650 3 1 1 89 3R 26310458 26310953 CCACCGTTCTATTCTATATGAG 57 26311003 26311021 TTCCCTTCTTGGGAAACAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31048 FBgn0051048 FBtr0085327 3 1 1 89 3R 24692467 24692544 CGTCTATACCACGAGATCC 58 24692596 24692615 GTATAAATGAGCCAGCTCCT 59 NA Drosophila melanogaster 50 CG6059 FBgn0039491 FBtr0085130 3 1 1 114 3R 22949093 22949112 TTAACGATCAAGTTCTGGTC 57 22948948 22948966 GAACGAGCTATTTCCTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG17191 FBgn0039473 FBtr0085152 2 1 1 68 3R 22845343 22845415 CAACAGTAAGTGCTCTTCC 58 22845293 22845311 CTATCTGAGGCACATACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14254 FBgn0039469 FBtr0085075 2 1 1 60 3R 22821429 22821449 GAGAAGACTCTGATCTATGTG 57 22821471 22821489 GGATCACGATATCTTGCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr97a FBgn0041224 FBtr0085081 2 1 1 65 3R 22791203 22791221 TCGTATTTCTGGCTGTTCC 59 22791099 22791176 TGAGGGTTTGGTTACTTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 beat-VII FBgn0039447 FBtr0085050,FBtr0085051 2 2 2 60 3R 22489063 22489326 AATCGACTGGGACAATTCC 59 22489021 22489040 TAGATCGAACTGGACATCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG14551 FBgn0039408 FBtr0084971 2 1 1 152 3R 21887748 21887766 GGAGAACCTAAGACTCCTC 58 21887302 21887320 TAAATGGTGACCACTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL27 FBgn0039359 FBtr0084932 3 1 1 77 3R 21510053 21510071 AAGGTGACCAAGAAGATGG 59 21509994 21510012 GTAGTTCAGGCTCTTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 XNP FBgn0039338 FBtr0084838,FBtr0084837 3 2 2 65 3R 21305069 21305143 AACTACGAGTTCGAAGGTG 59 21305022 21305040 GAAGTAATCCTTTCCGCTC 57 NA DesignNoJunction Drosophila melanogaster 50 Ela FBgn0013949 FBtr0084709 1 1 2 198 3R 20691529 20691547 AGGAGGATCCTCATCATCC 59 20691876 20691894 CTGTGGCAAGTATACTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13602 FBgn0039127 FBtr0110793 2 1 2 79 3R 19754113 19754132 AAACCTATACGGCATATTGC 58 19753966 19753984 CTTGCTAATCCGTTTCACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17382 FBgn0039080 FBtr0084416 3 1 1 60 3R 19314044 19314064 TTACCCTATGTACGACATCAG 58 19314086 19314104 CACACTTAAAGGCTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rumi FBgn0086253 FBtr0084320 1 1 1 87 3R 18576169 18576187 AGAAGATGACGGACTTTGC 59 18576050 18576121 CTTGAAGCTAAATTCATCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33099 FBgn0053099 FBtr0084288 3 1 1 82 3R 18355700 18355769 GAGGACAAGATCAAAGCTG 58 18355636 18355654 TTTCGTCTGTAACGATCCT 58 NA Drosophila melanogaster 50 CG34149 FBgn0083985 FBtr0111020,FBtr0113489 3 2 2 174 3R 18205913 18205987 GATTCTGAATGGAAGACAGAC 58 18206123 18206141 ATGGCTTGTTAGGATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7069 FBgn0038952 FBtr0084215 2 1 1 60 3R 18199275 18199293 GGGTATTTGTAGACGACGG 59 18199315 18199335 ACTTCATCTCCCTTTGATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31424 FBgn0051424 FBtr0084249 2 1 1 60 3R 17941741 17941759 ACTGTTGTCATGGATCACG 59 17941699 17941718 AGAAATCCACACCAATTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 E2f FBgn0011766 FBtr0084118,FBtr0084119,FBtr0084117 2 3 3 202 3R 17449734 17449753 GAGATCAACGTCTTCCTCTG 59 17449364 17449569 GGCGTTTGAAATAATCCCT 58 NA DesignRelaxed Drosophila melanogaster 50 lbe FBgn0011278 FBtr0084091 2 1 1 114 3R 17268106 17270809 AAGATAAATCCCACTTGGAC 57 17268011 17268029 TAGAGAAATCGCTTCTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CheB93a FBgn0038888 FBtr0084089 3 1 1 147 3R 17233645 17233663 AATGCATTACCACTCCAGG 59 17233844 17233862 CTATCACGCTTAACTCCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7009 FBgn0038861 FBtr0084029 2 1 1 269 3R 16958961 16958979 TTGTACACTCAGCTCAAGC 59 16958655 16958728 ATAGTTCTCGCCCAAATCG 59 NA DesignRelaxed Drosophila melanogaster 50 Elongin-B FBgn0023212 FBtr0083947 2 1 1 83 3R 16404508 16404647 CTTGACATTCAGGAACGAG 58 16404443 16404461 ATGACTTCGGGTAAGTCTG 58 NA Drosophila melanogaster 50 CG4433 FBgn0038763 FBtr0083843,FBtr0083842 3 2 2 90 3R 15845006 15845024 CTTGGACTCGATCAATGTG 58 15844873 15844952 ATTCAGTATGCACCAATGC 58 NA Drosophila melanogaster 50 CG4733 FBgn0038744 FBtr0083820 3 1 1 81 3R 15723302 15723320 TTCTATTCGGTAAACCGCA 58 15723365 15723476 GACTGATCATCTCCAGCAG 59 NA Drosophila melanogaster 50 CG5237 FBgn0038693 FBtr0083742 2 1 1 80 3R 15060249 15060270 TGATGATACCATACACTTCGAG 59 15060130 15060210 GACTTTGTGGATTTCTCTTCG 59 NA Drosophila melanogaster 50 CG7713 FBgn0038545 FBtr0083513 1 1 1 80 3R 13621346 13621427 ACGGTATTAAGATCAGCACTC 59 13621467 13621487 AGCTAAACTGGAAGAGAATGG 59 NA Drosophila melanogaster 50 ird5 FBgn0024222 FBtr0083236 2 1 1 88 3R 11872785 11872872 GAAAGACCTATTCGATTGCG 59 11872716 11872736 CGGCGTCATTATTTAACTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10264 FBgn0038394 FBtr0083222 3 1 1 86 3R 11869873 11869891 TTTCAAGACCTGGTCATCC 59 11870016 11870034 CTCGAAATTTAGCAATCGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG7026 FBgn0038276 FBtr0083007 2 1 1 78 3R 10725439 10725458 TCAAGATCCTCATTGTGGAG 59 10725380 10725398 TTGGAGGTCATGTAGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 foxo FBgn0038197 FBtr0082887,FBtr0082886 2 2 3 158 3R 9892725 9892744 GGAAATCTATCCTATGCGGA 58 9892865 9905076 TATGGAGTTCTTCCATCCG 58 NA Drosophila melanogaster 50 Hsc70-2 FBgn0001217 FBtr0082707 3 1 1 60 3R 8872895 8872913 AGAAGGAGGAGTTCGAGAG 59 8872934 8872955 GACATTATTGGAGTACAGATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)87Df FBgn0002354 FBtr0082703 2 1 1 149 3R 8856858 8856876 TTTCTCTACGGAATCAGCG 59 8856989 8857072 GACGGACCATTGATACCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14708 FBgn0037910 FBtr0082409 1 1 1 60 3R 7380422 7380440 AGGACATGTTCATCAACGG 59 7380464 7380482 ATAATTGCGGTGAAGACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6621 FBgn0037855 FBtr0082329 2 1 1 136 3R 6716556 6716729 GACAACAAGCTCATGAACAG 59 6716439 6716459 GACTTTCTAGATGAGACTGCT 58 NA Drosophila melanogaster 50 CG6254 FBgn0037794 FBtr0082184 3 1 1 95 3R 5985598 5985616 AGGATCACAAACTTGTGCA 59 5985458 5985542 CTAAATGGATCTTTAACCTCGC 59 NA Drosophila melanogaster 50 CG3934 FBgn0037783 FBtr0082176 2 1 1 95 3R 5886263 5886395 ACATCCAATTTGTTGCCAC 59 5886452 5886472 CTTCTAGGTCATAGGGTATGG 58 NA DesignNoJunction Drosophila melanogaster 50 tgo FBgn0015014 FBtr0082005 2 1 1 60 3R 4844947 4844966 GAGCAATTATCAACCCAGGA 59 4844906 4844924 TTCCCGACTTTAGATCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pyd FBgn0003177 FBtr0089783,FBtr0089784,FBtr0089782,FBtr0089781,FBtr0114459,FBtr0112822 2 6 8 110 3R 4659790 4659872 CCCGTAATATCGATCCACG 59 4659698 4659716 TGTATTTGCCGTAATCCGT 59 NA Drosophila melanogaster 50 CG31462 FBgn0051462 FBtr0081851 1 1 1 60 3R 4212739 4212759 TCTACAAGAGCTACAAATCCG 59 4212699 4212718 TAGGCATCCAAATAGTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Scr FBgn0003339 FBtr0081659,FBtr0081657,FBtr0081658 3 3 3 73 3R 2667000 2667018 CAATGGAAAGAAGAACCCG 58 2651400 2666963 CATTCACAGTACTCGTCCC 59 NA DesignRelaxed Drosophila melanogaster 50 lab FBgn0002522 FBtr0081696 2 1 1 60 3R 2488344 2488362 CTTCAATCGCTACTTGACG 58 2488302 2488321 ATTAAGCTGCAACGTATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1137 FBgn0037454 FBtr0081705 3 1 1 152 3R 2385095 2385113 CTGATAAGGAGGCCTACCT 59 2384902 2384920 CTTCCAAATCAGCTTGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18048 FBgn0037435 FBtr0081712 3 1 1 60 3R 2173090 2173108 GGTTCTGGATTATGGACGA 58 2173129 2173150 CTTAAGTTCTGCTTGATATCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31562 FBgn0051562 FBtr0078589 3 1 1 107 3R 2010543 2010561 CACCATCATGATCCTCGAG 59 2010766 2010784 TAGCGACTCTTCAGATTCG 58 NA DesignNoJunction Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199 3 14 15 133 3R 1100031 1100465 GAGCACAACGTATTTGGTG 59 1099916 1099934 TACATATTCTCGCCAGTCC 58 NA Drosophila melanogaster 50 CG14645 FBgn0040687 FBtr0078908 3 1 1 60 3R 160994 161013 TGAGACACTTAACAAACCAG 57 161036 161054 ATCCATGAATCCTGTTTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11523 FBgn0037156 FBtr0078511 3 1 1 60 3L 22259528 22259546 TGCATCTCATCCAAACTGG 59 22259486 22259504 CGATAGTCCGGATGTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 olf413 FBgn0037153 FBtr0089664 3 1 1 86 3L 22222254 22222366 CAAATTACGCCAGATACGAC 59 22222415 22222433 CGTCGAAAGTCCTGATAGG 59 NA Drosophila melanogaster 50 CG32442 FBgn0052442 FBtr0089797 2 1 2 142 3L 21522166 21522184 ACAACTGTCACCAAATCAC 58 21521993 21522060 AAACCTTCCAGTAGAGCTC 58 NA Drosophila melanogaster 50 CG12983 FBgn0037040 FBtr0114616,FBtr0114618,FBtr0078332,FBtr0114617 3 4 4 114 3L 20959768 20959786 TTTCCATTAAACCAGCCGT 59 20959614 20959693 GCATCATCAATAAAGGCTACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13248 FBgn0036984 FBtr0078234 1 1 1 60 3L 20402270 20402289 TCAATATAGCCGTGATGGTG 59 20402229 20402247 TTCTTACCATCCGCATACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 in FBgn0001259 FBtr0078183 2 1 1 60 3L 20361524 20361545 TAATCGGATACATACGCTTCTC 59 20361564 20361584 CTCTCCTGATTAAAGCTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32225 FBgn0052225 FBtr0074845 3 1 1 243 3L 20298017 20298035 AGACTGTGATCATGTACGC 59 20297735 20297810 TTGAAGTATCTCCAACCGC 59 NA DesignRelaxed Drosophila melanogaster 50 Hdm FBgn0036955 FBtr0074826,FBtr0074825 1 2 2 96 3L 20221968 20221986 AATAAGGTTGTGCTCTGCT 59 20222046 20222181 ACATTTCTCCTCTACTCGC 58 NA Drosophila melanogaster 50 CG32223 FBgn0036946 FBtr0074861 2 1 1 191 3L 20183914 20183933 ACTCCTTCATCCATGATCAG 58 20162148 20183760 GGATTCGAGTCGTTACCTG 59 NA Drosophila melanogaster 50 CG14185 FBgn0036936 FBtr0074818 3 1 1 85 3L 20100156 20100174 CAAGTGATCTGGAGTCTGG 59 20100223 20100241 ATTCAAGGCGATAGGAACG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(z)12 FBgn0020887 FBtr0074917,FBtr0074916 2 2 2 118 3L 19914078 19914161 GTCACAACAGACTCTACCA 58 19913978 19913996 CATCTGGATGGTCTTCTGG 59 NA Drosophila melanogaster 50 star1 FBgn0036790 FBtr0089578 2 1 1 81 3L 18567824 18567907 GGTACTGACGGTGATAAGTG 59 18568007 18568025 GGGATTCGAGTGAATCAGG 59 NA Drosophila melanogaster 50 Cpr72Ea FBgn0036617 FBtr0075382 1 1 1 60 3L 16355757 16355775 ATCCACTTCTGCTGTTAGG 58 16355799 16355817 TAGGGATAGTACAAGGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf4 FBgn0010280 FBtr0075450,FBtr0075449,FBtr0075451,FBtr0075448,FBtr0114589 3 5 5 192 3L 16112318 16112339 GATGAGGTATTTCTCAATCTCC 58 16112492 16112567 GTGGATCCAACTTGATGAC 58 NA Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0075438,FBtr0112850,FBtr0075439 3 3 6 81 3L 16070897 16073864 AGAAGAGCTCAAGCAACTC 59 16073908 16073927 AATTACTCTAATCAACGCGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG13445 FBgn0036532 FBtr0075503 2 1 1 227 3L 15802624 15802704 GTTCTTTGGTATCATCGCC 58 15802895 15802913 TAGCCTTCAGGATACTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 comm3 FBgn0053209 FBtr0075589 1 1 1 95 3L 15625073 15625092 GATTGGAGTCATCCTTACAC 57 15607122 15625016 TATGAGTTCTTCCACTGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10116 FBgn0036367 FBtr0075824 1 1 1 99 3L 13450044 13450117 CCAACAGTCGTAACTATTCC 57 13449964 13449982 TTATATTGCTGTCCTGCTG 57 NA Drosophila melanogaster 50 CG11268 FBgn0036336 FBtr0075876 3 1 1 120 3L 13012048 13012066 GCAGTTCAAGAGATACGGA 59 13012150 13012296 ATTCTGGACCAAGTGAGTG 59 NA Drosophila melanogaster 50 CG17153 FBgn0036248 FBtr0075992 1 1 1 270 3L 12111720 12111799 ACTAGACGATTCGTTGGAG 58 12112093 12112111 GGATTTGTGTCCAGTTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Pi3K68D FBgn0015278 FBtr0076086 3 1 3 130 3L 11779735 11780171 AAACGACAATACTGTGTCG 58 11779623 11779641 CGAAACCCTTTAGATGGTG 58 NA InUTR Drosophila melanogaster 50 CG14142 FBgn0036143 FBtr0076162 3 1 1 150 3L 11168111 11168191 GATGAGAGTAGCTATGCGG 59 11168441 11168459 TCCAAATGGGATAGTTGGG 58 NA Drosophila melanogaster 50 CG34456 FBgn0085485 FBtr0112762 2 1 1 75 3L 9355469 9355487 GTACGGATACGATGGAGTG 59 9355525 9355544 ATTCAGGATGGACAGTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sphinx1 FBgn0052383 FBtr0076865 2 1 1 60 3L 7431775 7431795 CGTCAGCGATCATATAAAGTG 58 7431735 7431754 GGAATACTCACAGAATCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bhr FBgn0082598 FBtr0076849,FBtr0076848 1 2 2 71 3L 7365560 7365578 ATGCCTTTGTCAAGTTCAC 58 7365613 7365692 TTTACGACAGGTAGCTAGG 58 NA DesignRelaxed Drosophila melanogaster 50 lark FBgn0011640 FBtr0076842,FBtr0076843,FBtr0076845,FBtr0076841,FBtr0076844 1 5 5 271 3L 7333870 7333995 GGACTATGACTACTATGACCG 58 7334466 7334484 TAAAGTCCTCGTAACCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12607 FBgn0035545 FBtr0073302 3 1 1 84 3L 4447578 4447907 TCCAGTCTATAACGAAACCA 58 4447954 4447972 TGTCTCTTTGTACTTCGCT 58 NA InUTR Drosophila melanogaster 50 CG32262 FBgn0052262 FBtr0073184 2 1 1 60 3L 3809384 3809403 TCATGTCCTACATGAAGCAC 59 3809343 3809361 GCAACTAACTTCTCCTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14964 FBgn0035410 FBtr0073110 3 1 1 102 3L 3175327 3175442 GGATAAGGACAAACAAGATTCC 59 3175246 3175264 TGTAAACTCTAGGAAGGCC 58 NA Drosophila melanogaster 50 Cht2 FBgn0022702 FBtr0072795 1 1 1 98 3L 1753509 1753527 ATCATGTGCTACGACTACC 58 1753302 1753447 GGAGAATTTCACACTCAGC 58 NA Drosophila melanogaster 50 CG9168 FBgn0035216 FBtr0072692 2 1 1 60 3L 1412194 1412212 CAACGCTTTGAGAATTCAG 57 1412236 1412254 CATGGGTGAAACTATTGCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED30 FBgn0035149 FBtr0072558 2 1 1 61 3L 653147 653165 TGAACTCATAGAGACCGTC 58 653104 653122 GTGTCCGATCGATGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13885 FBgn0040689 FBtr0100297 2 1 1 152 3L 391608 391626 TATACACTCGCATCACCAC 59 390987 391495 TGCACTTCATAACTGTAGTAGG 59 NA Drosophila melanogaster 50 CG13884 FBgn0035138 FBtr0072568 2 1 1 92 3L 366256 366274 ACTACAATCATGGTGGCTC 59 366182 366202 CATAACTTCCAAATAGCGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rno FBgn0035106 FBtr0072531,FBtr0072532 3 2 2 138 3L 197456 197474 GATGAGAATGTCATCTGCG 58 197278 197354 ATAGCCATTGTCCTGATGG 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-841d FBgn0083016 FBtr0113524 2 1 1 61 2R 17218438 17218456 ACTAGCTTCGTGTGATGAC 59 17218481 17218499 CATGGATAAGACGCATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33422 FBgn0053422 FBtr0086414 1 1 1 62 2R 15628264 15628282 AATACATCGGTTCTCGTCC 59 15628220 15628238 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 fzr2 FBgn0034937 FBtr0072146 2 1 1 60 2R 19838607 19838625 GTACAAGATACTCGATGCG 57 19838649 19838667 CCAGTCAATAAGGTTCAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)06496 FBgn0010622 FBtr0071985 2 1 1 133 2R 18949725 18949743 GGAGAGGATTAAGCAGCTG 59 18949610 18949628 CCTCGATAAGTTCGCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shg FBgn0003391 FBtr0071546 2 1 1 60 2R 16938715 16938736 GAGACGATCATTAATTACGAGG 58 16938676 16938694 TCAGATCATAGTCCGTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hrg FBgn0015949 FBtr0111010,FBtr0086484,FBtr0086483 2 3 3 88 2R 15554704 15554781 AGATTTCAAGTCTGGGATCC 59 15554635 15554654 GAATTCTGTTGTGGGTATGC 59 NA Drosophila melanogaster 50 CG16716 FBgn0034459 FBtr0086467 1 1 1 68 2R 15483191 15483209 AATAAGCAACCCATGTTCG 58 15483241 15483314 TATTGCCTGGAGATTCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9416 FBgn0034438 FBtr0086555 3 1 1 81 2R 15256386 15256469 CACTAAAGAGCATGGTTTACC 58 15256325 15256345 GGTGATAATGGTCAAGATCAG 58 NA Drosophila melanogaster 50 CG10474 FBgn0034427 FBtr0086561 2 1 1 69 2R 15173164 15173183 CTATATGGTCAGTAGTCCGG 58 15173114 15173132 TTTCTCAGGATTCGCTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15093 FBgn0034390 FBtr0086640,FBtr0086639 1 2 3 60 2R 14664055 14664073 ACTTTGTGATCACCATGCT 59 14664013 14664031 GTCATCTCATCGTAGGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18467 FBgn0034218 FBtr0086918 3 1 1 103 2R 13329029 13329048 TATAGACCATCCACTTCGTG 58 13329113 13329187 TGATATCCCTCTGTAACCAG 57 NA Drosophila melanogaster 50 Chit FBgn0013763 FBtr0087111 3 1 1 139 2R 12580300 12580318 CGATCGTCGATGAGAAGTC 59 12580421 12580501 GTCGTAGAACAGGGATGAG 59 NA Drosophila melanogaster 50 Iap2 FBgn0015247 FBtr0087297 1 1 2 66 2R 11821705 11821723 TAACTTTCAAGGACTGGCC 59 11821278 11821297 TAGTAGAAACCTGCCTTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34188 FBgn0085217 FBtr0112381 1 1 1 251 2R 11315048 11315119 GTAGGTGCAGAATGGAGTC 59 11314741 11314759 AACTTCCTCCATTCGTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 dup FBgn0000996 FBtr0087387 2 1 1 147 2R 11265914 11267069 CTTATAAGCCCTTTGAAGACC 58 11265787 11265805 CCAATTTGACAGGAGATCC 57 NA Drosophila melanogaster 50 Cyp6a19 FBgn0033979 FBtr0087453 2 1 1 60 2R 10766342 10766362 GGAATACGATTCTATGCAGGA 59 10766381 10766456 CCTTAGCGATTCATTGATAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33156 FBgn0053156 FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681 2 5 5 83 2R 9436514 9436533 ATTATGGTGACTCCCATCTG 58 9436391 9436470 TACTGATATCTTCAGCTCCAC 58 NA Drosophila melanogaster 50 cbs FBgn0086757 FBtr0087666 3 1 1 172 2R 9339513 9339827 CTTTGAGCGCAATAAATCTC 57 9339962 9339980 GCATTATGGTTTCGTCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13326 FBgn0033794 FBtr0087779 3 1 1 135 2R 9017613 9017686 AATCAGACACTAGCGATGC 59 9017496 9017517 TCTTAAGATTCTCGCTCATCAC 59 NA Drosophila melanogaster 50 CG3790 FBgn0033778 FBtr0087815 1 1 1 80 2R 8760662 8760740 CCATGATCAATCATATGGGTC 58 8760602 8760621 CAAATCCTCCCAAGATTAGC 58 NA Drosophila melanogaster 50 Tsp47F FBgn0033629 FBtr0088152 2 1 2 237 2R 7265747 7266040 GTAACGACATGCGAATCTC 58 7265469 7265487 TCCACAATGAAGATGACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13202 FBgn0033623 FBtr0088157 1 1 1 60 2R 7243888 7243909 TGATGGAGAACTCTATGAACTG 59 7243849 7243867 CTGAGTGCTATAAACAGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr47Ed FBgn0033601 FBtr0088188 1 1 1 60 2R 7149171 7149284 GCTATTGATCTTGACTGGCT 59 7149130 7149148 AATGGAAGTACACTCAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17765 FBgn0033529 FBtr0088274 3 1 1 113 2R 6368037 6368603 GCTGATGATAAGCATGTTCG 59 6368735 6368754 TGATCGTAGGTCTTGAAGAC 58 NA Drosophila melanogaster 50 CG30008 FBgn0050008 FBtr0088380 3 1 1 87 2R 5777590 5777610 CGATTTATAAGGATCCCTGGT 59 5777659 5777803 CATTCCATGAAATGCGGAC 59 NA Drosophila melanogaster 50 CG1513 FBgn0033463 FBtr0088450 2 1 1 92 2R 5772529 5772548 TCATAACATTGGTGAGGGTG 59 5772395 5772474 GTAAGAATAGACCTGCCGT 58 NA Drosophila melanogaster 50 dpr12 FBgn0085414 FBtr0112626 3 1 1 97 2R 1744802 1744883 ATTGAGAAGAGTCCTACACC 58 1744943 1744961 GTCTCAATGGTTATGTCGC 58 NA Drosophila melanogaster 50 His-Psi:CR33805 FBgn0053805 FBtr0091809 1 1 1 60 2L 21429078 21429097 GAATTATTCCGCGTCATCTG 59 21429120 21429138 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17018 FBgn0039972 FBtr0085958,FBtr0085957,FBtr0085956 1 3 3 80 2L 22365253 22365274 GTCAGTTATACTCGAGATTCCT 58 22365314 22365385 TGGGACATCCTTTAGAAGTC 58 NA Drosophila melanogaster 50 CG1832 FBgn0032979 FBtr0085964,FBtr0100407 1 2 2 129 2L 22168219 22168237 ATACAATTACGCCCTGGTC 59 22168055 22168126 GGATATGGTGTTAGCTGCA 59 NA Drosophila melanogaster 50 His2B:CG33880 FBgn0053880 FBtr0091884 1 1 1 61 2L 21508322 21508340 AAGAACATCACCAAGACCG 59 21508279 21508297 TAGATGGCATAGCTCTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10188 FBgn0032796 FBtr0081283,FBtr0081282 2 2 2 137 2L 19506345 19507491 AGGTATTTCGACCCATTCG 59 19506226 19506244 GCTATAATTGAGCTCGTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pax FBgn0041789 FBtr0100449,FBtr0081211,FBtr0081213,FBtr0081212,FBtr0081210 1 5 6 97 2L 19410546 19410564 CAAACATCAAGCTCTGCAG 59 19410401 19410485 AGTGCTCTTGATACACCTG 58 NA Drosophila melanogaster 50 Ddc FBgn0000422 FBtr0081168 1 1 3 92 2L 19119229 19119247 ATCAAGATCGACATGGAGG 58 19118128 19119173 CCTTTCGCGTATATTCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5674 FBgn0032656 FBtr0081023,FBtr0081021 1 2 3 104 2L 17971990 17972267 GATTCCGCAAGAAGTTGAC 59 17972335 17972353 TGTACTCCGGATTCATTCG 59 NA Drosophila melanogaster 50 CG15147 FBgn0032654 FBtr0080988 1 1 1 61 2L 17626056 17626074 CTCCAGCTAAGGATCAACG 59 17626013 17626031 GCAATAGCAACCTCAAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15136 FBgn0032625 FBtr0080954 3 1 1 61 2L 17047596 17047778 TGATGAGTTATCTACGTACACC 59 17047556 17047574 GCTCGTAGCATATGTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyt-c-d FBgn0086907 FBtr0080888 2 1 1 61 2L 16719328 16719346 GGAATTTGGACGAGTACCT 58 16719371 16719389 GAACACCATCTTTGTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fzy FBgn0001086 FBtr0080833 3 1 1 93 2L 16311771 16311789 ATATACCCACCACATCCGA 59 16311899 16311917 ACTATATTGTCGGCACTCC 58 NA DesignNoJunction Drosophila melanogaster 50 wor FBgn0001983 FBtr0080740 3 1 1 64 2L 15425379 15425397 AAGAAGCGTCCGATAATGG 59 15425271 15425353 GGTCCTTCATCATGACTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)34Fa FBgn0001967 FBtr0080608 2 1 1 74 2L 14019954 14019972 CAGCTATGTGGTGTACGAG 59 14019898 14019916 AGAATGGTTCGATATCCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16996 FBgn0032412 FBtr0080334 3 1 1 60 2L 12110363 12110381 AAGTTACCTTGTGGTCAGG 59 12110404 12110423 ATATAAACGACGAGACCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 w-cup FBgn0032269 FBtr0080132 2 1 1 135 2L 10576864 10576882 TCAAGAAGACAATTCGCGA 59 10576687 10576771 CTGTGACTAGTAGATGTAGATAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myo31DF FBgn0086347 FBtr0080035,FBtr0080036 1 2 2 101 2L 10494502 10494520 TGGATATTTACGGCTTCGA 58 10494359 10494440 GCACCAGTTCTATGAATAACTG 59 NA Drosophila melanogaster 50 Grip75 FBgn0026431 FBtr0080033 3 1 1 105 2L 10483619 10483696 GAACTTCCAGATAGTTTGCA 57 10483764 10483782 AATACTTCTCCAGACGTCC 58 NA Drosophila melanogaster 50 CG6232 FBgn0032252 FBtr0080029 1 1 1 80 2L 10446357 10446531 TATGTCAAGGATGACGCTG 59 10446574 10446593 TACGGATTCGTTTAGTGTGG 59 NA Drosophila melanogaster 50 CG31720 FBgn0051720 FBtr0113413,FBtr0089788 3 2 2 218 2L 10236542 10236939 TCAAAGCCCTCAGATTTCG 59 10236224 10236242 CATCTTGAAGCGAATCCTG 58 NA DesignNoJunction Drosophila melanogaster 50 Aldh FBgn0012036 FBtr0079806 3 1 1 136 2L 9390125 9390252 GTCTATCTTGCCAGTCTGG 59 9390352 9390370 GGAATAGTCTTGCCATGGT 59 NA Drosophila melanogaster 50 CG13108 FBgn0032100 FBtr0079773 1 1 1 60 2L 9164833 9165025 TACCTCCAGTTCTGTATATTCC 58 9165046 9165064 GACCTCTATGAAGTCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cka FBgn0044323 FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538 2 4 4 99 2L 8036253 8036272 AACATCAATGGAAACGAGAG 58 8036391 8036411 CCACGATTATTTCATCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34132 FBgn0083968 FBtr0110879 2 1 1 89 2L 7885725 7885743 AATTGCTCACGCAAATGAC 59 7885795 7885886 AAATGCATTTCTGTTCGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7149 FBgn0031948 FBtr0079496 3 1 1 80 2L 7788085 7788163 TACTACAACTTGGATGGCA 58 7788023 7788041 ATGATCGAATAGCTCTCCC 58 NA Drosophila melanogaster 50 chm FBgn0028387 FBtr0079443 3 1 1 83 2L 7413998 7414082 AGACTCGAAGGTAAAGCTG 59 7414129 7414147 AAATCATAGTCAGGCACCA 58 NA Drosophila melanogaster 50 Pvf3 FBgn0085407 FBtr0112612,FBtr0112611 2 2 3 137 2L 7107248 7107268 ATCCTTCCAAGATCTATACGC 59 7100546 7107149 TGCTCTTCACGAAGAAGTG 59 NA Drosophila melanogaster 50 Pcp FBgn0003046 FBtr0079388 2 1 1 67 2L 7021722 7021811 TGCTTGTGAACTTCATCGT 59 7021842 7021860 GTCCGGAATGTAGGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13771 FBgn0031844 FBtr0079323 3 1 1 118 2L 6663058 6663140 TTCTTGCAGTGTGGATCTG 59 6662958 6662976 CTTGTCTTGCAAGAAGTGG 58 NA Nonspecific Drosophila melanogaster 50 eIF-4a FBgn0001942 FBtr0079178,FBtr0079175,FBtr0079177,FBtr0079176 2 4 4 90 2L 5984935 5985036 ATTCATAGAATTGGTCGCG 57 5985089 5985108 TATCCTTAAGGATTCGTCGA 57 NA Drosophila melanogaster 50 CG34351 FBgn0085380 FBtr0112561 3 1 1 101 2L 4717851 4719812 CGGCTATTATGAGAACCGA 58 4719876 4719895 AATTCCTCCTCGTTGAAGTC 59 NA Drosophila melanogaster 50 CG34177 FBgn0085206 FBtr0112368 2 1 1 197 2L 4434383 4434401 ACCCTACTTTGCAACTAGG 58 4434562 4434631 ATTGGGATAGGCTGAATCC 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG3702 FBgn0031590 FBtr0077477 1 1 1 60 2L 4225327 4225345 GCCTACTTTGTCTACTCGT 58 4225285 4225303 TGAGCACAAATGAGTACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16704 FBgn0031558 FBtr0077550 3 1 1 172 2L 3692499 3692517 ACTCATCTGCTGTCTTGTG 59 3692230 3692249 GATTATTGTTTCCGTGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9662 FBgn0031529 FBtr0077594 2 1 1 84 2L 3376537 3376555 GATTCAGCATTCCAATGCC 59 3376411 3376490 TATATGATACCGCCTGTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or23a FBgn0026395 FBtr0077698 1 1 1 60 2L 2654853 2654925 GTATAGATTACTCGATGTGACC 57 2654945 2654964 CATAAACTGCACCATCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17242 FBgn0042188 FBtr0077803 2 1 1 60 2L 2268479 2268498 CCAATAATCGGCTGTATGGA 59 2268438 2268456 GATTTATTGAGGACGTCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 frtz FBgn0086698 FBtr0077911 3 1 1 135 2L 1712034 1712054 AAGAGAAATGGTTACTCCAGG 59 1711859 1711939 TAGTCACATTGGTCGTAATGG 59 NA Drosophila melanogaster 50 CG12237 FBgn0031048 FBtr0074761 1 1 1 63 X 19536354 19536372 TCATCAGTGACTCGAACAG 59 19536309 19536327 CAATCGGCCAAGTTATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5445 FBgn0030838 FBtr0074425,FBtr0074427,FBtr0074426 2 3 4 61 X 17197412 17198114 GATGAGTAACTGGAGCCTG 59 17198139 17198157 ACTGTAAGCTGCAGAAGTC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG13404 FBgn0030559 FBtr0073921 1 1 1 66 X 14159851 14159869 GTTACTATACGGACTGGGC 59 14159716 14159734 ATAATCATGTTCGCCTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hep FBgn0010303 FBtr0073747 3 1 3 122 X 12976564 12976652 TTAGTAGCATCGGTCAATCG 59 12976461 12976480 CATCCGTGATCAATGTTTGG 59 NA Drosophila melanogaster 50 fne FBgn0086675 FBtr0073712,FBtr0113493 1 2 2 89 X 12837475 12837558 ATATTTCTGGTCTATCGAAGGG 59 12837608 12837626 TCTTGCCATTCAACTCCTG 59 NA Drosophila melanogaster 50 CG1791 FBgn0030163 FBtr0112968,FBtr0071429 2 2 2 101 X 9858700 9858718 GATAATGAGAAACTCGGCG 58 9858501 9858577 ATGAATTGTACACGTGCTG 58 NA Drosophila melanogaster 50 c12.1 FBgn0040235 FBtr0071324 3 1 1 105 X 9212502 9212520 ACTGATGAACTATGAGCCC 58 9212415 9212433 AAAGACCACATCATCGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7246 FBgn0030081 FBtr0071353 3 1 1 75 X 8974529 8974547 TATACGAGAAGATGCTGCT 57 8974408 8974426 AACTCGTACAGCCATAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12075 FBgn0030065 FBtr0071253,FBtr0071254 1 2 2 63 X 8763928 8764014 CAACAGTTCCAGTGATGAC 58 8764041 8764059 CTTCAGAGCAATAACCGAG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG3588 FBgn0025643 FBtr0070549 3 1 4 64 X 2817770 2817788 AGAACGGAACATCATCCAG 59 2817814 2817834 GCGATTGAAGTACACATACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40629 FBgn0085505 FBtr0113918 1 1 2 160 U 2572876 2572894 CAACTTCTTCATGCAGCTG 59 2573059 2573077 ACTTGTTGACGGTGTATCC 59 NA DesignNoJunction Drosophila melanogaster 50 Fur1 FBgn0004509 FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986 1 5 6 103 3R 21180026 21181954 GCTATATGGCACAAATCACAC 59 21179943 21179961 ATTGAACTGGTTCGACTGG 59 NA Drosophila melanogaster 50 CG17751 FBgn0038717 FBtr0083778 2 1 1 61 3R 15433733 15433753 TTTATGGACACCCAGTATGTC 59 15433832 15433851 TGTTGTGGACTCAAGTACTC 59 NA DesignNoJunction Drosophila melanogaster 50 Rpb4 FBgn0053520 FBtr0100273,FBtr0083604,FBtr0100275,FBtr0083603 2 4 5 99 3R 14080129 14080147 GACAGAGGAATTGCAACTC 58 14079990 14080008 CATTATGAGACCGTGTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 3 7 12 160 3R 11122417 11125003 AGAAATACGATGAGGTTGC 57 11126526 11126544 CTTCTCCTCAGAGACTTCC 58 NA Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089963,FBtr0089966,FBtr0089967,FBtr0089962,FBtr0089961,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 2 10 12 205 3R 11120874 11120892 TTGCTCGAAGAAGACTTGG 59 11122404 11122423 TATTTCTTGTCAGCCTCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8773 FBgn0038135 FBtr0082739 3 1 1 106 3R 9122693 9122791 GAGCGAAATCACTGTAACTG 58 9122860 9122878 GATCATTCCACAGATCGGT 59 NA Drosophila melanogaster 50 CG14736 FBgn0037986 FBtr0089692,FBtr0089691 2 2 3 80 3R 7866654 7866732 TAGGTCGTCTTAGGAAAGGT 59 7866773 7866793 TATCTACTCTGTGAGTCTCGT 59 NA Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082208 3 1 8 83 3R 5841637 5844227 GCCAATATTAGTTCCAAGGTG 59 5841574 5841592 GTAGACGGTTTGCTTACAG 58 NA Drosophila melanogaster 50 exba FBgn0037346 FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745 1 7 7 82 3R 1423978 1423999 GGTTCTATTATTCGTAAAGGGC 58 1423651 1423935 AACCGTTGACTAACCAGAG 59 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897 1 5 15 192 3R 110112 120843 ATTAAGTGCCGTTAAAGGC 58 120999 121298 GATGTTGTACTTATCGCGA 57 NA DesignRelaxed Drosophila melanogaster 50 alpha-Cat FBgn0010215 FBtr0070038 2 1 1 80 3L 23324106 23327475 GATAATATGAGGCAATTCGGAC 59 23324047 23324066 GGGATCCTTAAGTTCTTGCT 59 NA Drosophila melanogaster 50 CG32169 FBgn0052169 FBtr0113428,FBtr0075285 1 2 3 80 3L 17061140 17061158 TTGATCTAACCAATGGGCA 58 17060464 17061099 GATAGTTGTTCATCACTGACAG 58 NA Drosophila melanogaster 50 CG17033 FBgn0036546 FBtr0075510 3 1 1 89 3L 15950151 15950242 CAACCTACTGTCCAGACTG 59 15950295 15950313 AAATGGGAATTGTAGGCGT 59 NA Drosophila melanogaster 50 CG7857 FBgn0026738 FBtr0075605 1 1 1 60 3L 15497177 15497198 TCGCTTATCTCATACATGATCC 59 15497138 15497156 CGAATTGTTGGTCGTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10418 FBgn0036277 FBtr0075954 3 1 1 92 3L 12329936 12330017 AACGACCTCAGCATATGTG 59 12330073 12330091 GTACTTGTCCGGATCTGTG 59 NA Drosophila melanogaster 50 CG16711 FBgn0036032 FBtr0076397,FBtr0076396 1 2 2 60 3L 9701212 9701233 CATTAAATCCCTCTCGAATCTG 58 9701254 9701272 CACATTGAGAAGTGGAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5280 FBgn0035952 FBtr0076552 2 1 1 63 3L 8982550 8982569 AGGAGGATCTCATAAACGAG 58 8982440 8982458 ATTTCCGTCAACCACTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7207 FBgn0027569 FBtr0076717 1 1 1 101 3L 8276303 8276384 GCTCTGTTGTTAATCCTGGA 59 8276221 8276239 TTACGTATCCCGTAAAGCG 59 NA Drosophila melanogaster 50 scf FBgn0025682 FBtr0089942,FBtr0089940,FBtr0089941 3 3 3 60 3L 1299623 1299641 TGGTTATTTGAACGAGGAG 57 1299665 1299683 CGAATGATCGAAGTCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13877 FBgn0035112 FBtr0072495 2 1 1 79 3L 218187 218292 ACATATGCACTCTTGTGGT 58 218335 218353 CTGAGACTTAGGATGCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mthl8 FBgn0052475 FBtr0072462 1 1 1 81 3L 25273 25352 TATTCTACCAAGTTTGGCGT 59 25394 25414 GCTCAAGTACAGCTTAAATGC 59 NA Drosophila melanogaster 50 l(2)tid FBgn0002174 FBtr0089505,FBtr0089503,FBtr0089504 1 3 3 74 2R 19596287 19596305 AAACCAAAGCGAAAGAAGG 58 19596343 19596361 TCTTGCTTATGAAGCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 asrij FBgn0034793 FBtr0071902 2 1 1 292 2R 18774490 18774508 TCAGTTACCAGCAGAAGTG 59 18774764 18774843 CATTGAACCAGAGTCCAGG 59 NA DesignRelaxed Drosophila melanogaster 50 aPKC FBgn0022131 FBtr0110996,FBtr0110998,FBtr0110999,FBtr0110997,FBtr0110995,FBtr0087426 1 6 6 82 2R 10835449 10835469 TCTTGCTCTATGAGATGTTGG 59 10835330 10835405 GTCCTCAGTGTTCTGATCG 59 NA Drosophila melanogaster 50 mars FBgn0033845 FBtr0087668 1 1 1 60 2R 9391978 9391996 TTTACGCGTTACTCAGTGG 59 9392020 9392038 GCTGAGGATCCAAGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17580 FBgn0040755 FBtr0087857 2 1 1 79 2R 8694698 8694717 TATACTCCACAGAGTTGGTG 58 8694816 8694834 TTCAAACAGGAGAACAGAC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG30054 FBgn0050054 FBtr0114522 2 1 1 191 2R 8511580 8511660 GGAGAGCATAGTGAACTGG 59 8511875 8511893 AATTCGACCTATGTCACCC 59 NA Drosophila melanogaster 50 Pax FBgn0041789 FBtr0100449,FBtr0081211 2 2 6 80 2L 19419921 19419939 GTACGGAAAGATCGATCCG 59 19410634 19419878 AATAGAGCATATCCTGGCAG 59 NA Drosophila melanogaster 50 cana FBgn0040233 FBtr0091678 3 1 1 85 2L 11276002 11276020 AAGTAGAAATCGATCGCCG 59 11276069 11276148 AGTTTGAGCTTCCAGATCG 59 NA Nonspecific Drosophila melanogaster 50 IP3K1 FBgn0032147 FBtr0079869 2 1 1 102 2L 9786714 9786732 TGAGTCTACAGAGATCGGG 59 9786798 9787163 AGCTCTAGGGCATTAATGG 58 NA Drosophila melanogaster 50 CG32984 FBgn0052984 FBtr0079758 1 1 1 108 2L 8965699 8965781 ATGGGCTATAATAAGGTAGCTG 59 8965850 8965868 CTGGTTGAGTTGTATCGCA 59 NA Drosophila melanogaster 50 Herp FBgn0031950 FBtr0079493,FBtr0079494 2 2 2 87 2L 7797320 7797411 GGGTGCGATTTATCTATATCAC 58 7797254 7797272 GCCAGCATTATTGTTACGA 58 NA DesignRelaxed Drosophila melanogaster 50 Tsp FBgn0031850 FBtr0079313,FBtr0079311,FBtr0114488,FBtr0079312,FBtr0079314 3 5 6 105 2L 6701761 6701779 TGGATGTTGCATCACTCTC 59 6700488 6700562 CGACGAGGTCTAATGTGTC 59 NA Drosophila melanogaster 50 CG3714 FBgn0031589 FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077482,FBtr0077479 1 5 6 114 2L 4190819 4192645 AGAAGTCATTCAGGAGTGG 58 4190723 4190741 GAAAGATAGGCCAGATCCC 59 NA Drosophila melanogaster 50 CG9662 FBgn0031529 FBtr0077594 1 1 1 65 2L 3376587 3376605 GTATAACCTGCCCTTCCAC 59 3376540 3376558 ATTGGAATGCTGAATCTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4270 FBgn0031407 FBtr0077755,FBtr0077754 1 2 2 158 2L 2263727 2263745 TAAATAAGCTGGCTCAGGA 57 2263925 2263945 AGCTATTGATTTCCCGATACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089431,FBtr0089436,FBtr0089435 3 3 10 118 2L 111010 111030 GATTGGAAGACACTTAACCTG 58 111110 112700 AACATGATACCCTGGTCAC 58 NA Drosophila melanogaster 50 Hs3st-B FBgn0031005 FBtr0074676 3 1 1 201 X 19144210 19144228 GTCTACCACATGAATCCGG 59 19144944 19144962 CCAGATAGCGTGCATAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15221 FBgn0030331 FBtr0112979 2 1 1 181 X 11628579 11628597 AACATCTGGATGCTGATCG 59 11628742 11628832 ATACCAATCGCCATAGCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG17626 FBgn0040032 FBtr0113755 2 1 2 71 U 251491 251511 ACAACTATCGTCTCAATAGGC 59 251544 251607 CTTTGTGAAGGTGGTTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 gish FBgn0011253 FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083265,FBtr0083261,FBtr0100333,FBtr0083263 1 7 8 115 3R 12125399 12126972 TGGTTCAGTACAGGTTGTG 59 12127051 12127069 TTTCATCGACCACTTCGAC 59 NA Drosophila melanogaster 50 yellow-e2 FBgn0038151 FBtr0082758 3 1 1 131 3R 9232074 9232350 TTATTATCCACCTAATGGCGG 59 9231963 9231981 GGATAGGCCTGGATTTCAC 59 NA Drosophila melanogaster 50 CG11656 FBgn0038109 FBtr0082698 1 1 1 129 3R 8835796 8835893 TTATCTCAAGAGGCTGCTG 59 8835986 8836004 TCTTCTTGGAACTCCTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4820 FBgn0037876 FBtr0113221,FBtr0082345 1 2 2 148 3R 7043274 7043350 GTGAGACATGAAAGGGAGG 59 7043518 7043536 GAAGAGTTGATGTGCTGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG1142 FBgn0037504 FBtr0081559 3 1 1 131 3R 3298562 3298993 TCATCAACAGAGCTGAACG 59 3298449 3298468 ATTGCTTAGGGTTCAGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17027 FBgn0036553 FBtr0075516 1 1 1 69 3L 15974053 15974302 GACTTGTTGCCTACTCCTG 59 15974335 15974353 TAGAAGGCATCCAGATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32068 FBgn0052068 FBtr0113421 2 1 1 96 3L 10656819 10656900 GATGATGAGATCACATGCTC 58 10656959 10656977 GAATTTCCTCATCCGTGTG 58 NA Drosophila melanogaster 50 CG6527 FBgn0036085 FBtr0076291 3 1 1 89 3L 10551831 10551911 TACAAGGTGCAATGTACAG 57 10551760 10551778 TATGAGGACATGTGAGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10289 FBgn0035688 FBtr0077019 2 1 1 96 3L 6165386 6165466 TTACCTTCACAGATGAGCC 58 6165308 6165326 ACAGTGATCACAGTCTCCT 59 NA Drosophila melanogaster 50 Lcp65Ag3 FBgn0086611 FBtr0077061 1 1 1 74 3L 6123688 6123706 ATAAGAACGGATTCCAGCC 59 6123632 6123650 ACAGTGAAAGCAACTTCAC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG18418 FBgn0035568 FBtr0073366 1 1 1 60 3L 4689758 4689778 CCTTGTACAATGGATTGAGTG 58 4689718 4689736 ATCTTGGCTGATGTGTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr64a FBgn0045479 FBtr0073194 3 1 1 92 3L 4028241 4028260 GCCTGATATTCCAGATGACC 59 4028315 4028403 TTCCAGCCATTCCAAAGAG 59 NA Drosophila melanogaster 50 CG3548 FBgn0035033 FBtr0072315 2 1 1 60 2R 20489012 20489030 CGGAAGCATACAGGATCAG 59 20489054 20489072 GACATTGTTGTAGTCCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tud FBgn0003891 FBtr0071582 2 1 1 89 2R 17072518 17072592 GTCAATGTGACAAATGTACAGG 59 17072639 17072660 GGCACGATTATAAGGATTTGTC 59 NA Drosophila melanogaster 50 l(2)05510 FBgn0028622 FBtr0086258 3 1 1 74 2R 16451345 16451363 CAAGGTCTACGAGATCTCG 58 16451216 16451308 AGGACCTCATTCTTGTTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 mip40 FBgn0034430 FBtr0086560 3 1 1 69 2R 15178917 15178935 GTACCTCCGATCTTCTGTC 58 15178866 15178885 ATATGCTTTATCCAGTGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 3 8 8 99 2R 14032395 14032483 AGGAAAGAATTCTGAGAAGC 57 14032544 14032563 CTCAATCATCGGATACAGAC 57 NA Drosophila melanogaster 50 CG10151 FBgn0033960 FBtr0087471,FBtr0087472 2 2 3 81 2R 10641389 10641503 ATCACGAGAAAGCAATGAG 57 10641326 10641345 AAACGATTGTGTTGGATCTC 58 NA Drosophila melanogaster 50 CG12129 FBgn0033475 FBtr0088395 2 1 1 149 2R 5921048 5921118 AAGAGCCGGATCTTTATGG 59 5921284 5921302 TCGTAGATCCTTTCATGCC 59 NA DesignNoJunction Drosophila melanogaster 50 d4 FBgn0033015 FBtr0086083,FBtr0111115,FBtr0086082 1 3 3 79 2R 1182527 1182545 CAAACGTAGAGGGTACTCC 59 1182640 1182658 ATCAGATTCTCCCTCAACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17665 FBgn0039997 FBtr0111269,FBtr0111268 3 2 2 86 2R 123439 123513 ACAATTCTAGCGAGGAGGA 59 123371 123392 GTCAGTCAGAATCATTGTTAGC 59 NA Drosophila melanogaster 50 Rpb11 FBgn0032634 FBtr0081011 2 1 1 82 2L 17409917 17409935 ATTATTCTCCGCAGGAAGC 59 17409791 17409871 GTCTTTGAAACGCTCTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33309 FBgn0053309 FBtr0080674,FBtr0100163 3 2 2 60 2L 14811306 14811327 TGAATCCCGAGATAGTTAAACC 59 14811347 14811366 GGCGATATCCTTAACTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33309 FBgn0053309 FBtr0080674,FBtr0100163 1 2 2 100 2L 14810811 14810889 CGATAATAGCCAACGAGAC 57 14810953 14810971 CTTTCGACCTAGACCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rho-6 FBgn0032415 FBtr0080360 3 1 2 74 2L 12131336 12131355 CCTACTGACCTATATGCTGC 59 12131055 12131300 CCTATAAAGCACTGAAAGCA 57 NA DesignRelaxed Drosophila melanogaster 50 tRNA:CR31242 FBgn0051242 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-6-1 FBgn0046819 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi28S-3316a FBgn0082972 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 su(f) FBgn0003559 FBtr0113735,FBtr0113732,FBtr0113733 3 3 5 80 XHet 77307 77325 ACTATATCGCATTCGAGCA 58 77366 77445 CGTTCATGTAATCCTTAGATCG 58 NA Nonspecific Drosophila melanogaster 50 CG12061 FBgn0040031 FBtr0113683,FBtr0113682 2 2 3 116 XHet 22997 23088 TACTCAACCGACCAAACTG 59 23168 23186 GCCTCATACCACATAACCA 59 NA Drosophila melanogaster 50 snoRNA:Psi28S-2876 FBgn0086671 FBtr0091623 2 1 1 65 X 17038913 17038933 CTATCTAATATCCGTAGCGTC 57 17038868 17038886 GTCTCTTCGTTTCATACGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0196 FBgn0027279 FBtr0077355,FBtr0077356,FBtr0112508,FBtr0077357,FBtr0077354 3 5 5 83 X 21898310 21898330 CATATTTCGGTGCATGTATCC 59 21898374 21898508 GAGTGCAATCTTAGCAAACC 59 NA Drosophila melanogaster 50 shakB FBgn0085387 FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572 2 5 5 81 X 20644231 20644249 ACGCTAATATACAGGGTGG 58 20643790 20644186 GACGCACTAACCTAAATCG 58 NA Drosophila melanogaster 50 shakB FBgn0085387 FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572 3 5 5 82 X 20644231 20644250 AACGCTAATATACAGGGTGG 59 20643790 20644186 GACGCACTAACCTAAATCG 58 NA Drosophila melanogaster 50 CG14231 FBgn0031060 FBtr0074814 2 1 1 96 X 19594805 19594823 CAATTGAGTACTGCCTCCT 58 19594727 19594745 TATATGGCATCGTTGTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdc42 FBgn0010341 FBtr0074751,FBtr0074752 3 2 2 64 X 19592046 19592065 TGCTCATCTCGTATACAACC 59 19592092 19592110 ATAGTTGTCGAACACCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CoRest FBgn0053525 FBtr0091483 3 1 5 148 X 19418058 19418078 CTACTACTCGTGGAAGAAGAC 59 19418187 19422683 GCCTATTCTTCTTGTCATCG 58 NA Drosophila melanogaster 50 CG7453 FBgn0030991 FBtr0074667,FBtr0074666 2 2 2 64 X 19074921 19074939 ACTGATATACACCAGGAGG 57 19074967 19074985 GTACCTGGCTTATCCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7288 FBgn0030969 FBtr0074643 2 1 1 90 X 18753660 18753735 GAACTTTCCCATCAAGCAC 59 18753786 18753807 CACCAGATTGTATTTCGTATCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG6023 FBgn0030912 FBtr0074580 1 1 2 119 X 18209706 18209724 ATTCTTGGAGCGACTACAG 59 18209360 18209623 TTGGAGGTAGAAATGCGAC 59 NA Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089658,FBtr0089660,FBtr0089662 3 3 7 103 X 17824694 17824712 AATTACTTCTATCACCGCG 57 17824461 17824627 AAATGTTGACCTAGTGCAC 57 NA Drosophila melanogaster 50 CG4678 FBgn0030778 FBtr0074320,FBtr0074319 1 2 3 108 X 16602677 16602698 GGATTGGATATCCAAGATTCAG 58 16602767 16603420 GTAGGTCTGGAACATGGAG 59 NA Drosophila melanogaster 50 CG13011 FBgn0030771 FBtr0074318 3 1 1 182 X 16573632 16573650 CTACAGTCTCATTCGGCAG 59 16573938 16574031 GCATAGCCCATGTAATAGCA 59 NA Drosophila melanogaster 50 CG4239 FBgn0030745 FBtr0074270,FBtr0074269,FBtr0074268 3 3 3 212 X 16281482 16281500 AAAGGTGTACGATGGTGTG 59 16281737 16281755 AGCACAAAGATGATCGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Dsp1 FBgn0011764 FBtr0089259,FBtr0089263,FBtr0089261,FBtr0089262,FBtr0089260 3 5 5 79 X 16230977 16230996 AAGAAACATCCCGATGAGAC 59 16231038 16231132 TTGTCCACCATTGTCTTCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9170 FBgn0030716 FBtr0074154,FBtr0074153 1 2 2 89 X 15875695 15875779 AAGATATGCTACTCGGAGG 57 15875624 15875642 TATGGCATCTAGTGGATGG 58 NA Drosophila melanogaster 50 CG9056 FBgn0030702 FBtr0074167 2 1 1 81 X 15778401 15778487 GAGGATCTTGAGTTTGCCA 59 15778338 15778356 AGGTACAAGTTAGCTCGTC 58 NA Drosophila melanogaster 50 CG8206 FBgn0030679 FBtr0074085 1 1 1 62 X 15633866 15633884 ACAATCTGGGACTGTTCAC 59 15633910 15633928 TGGTACTGATTCCAGAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lsd-2 FBgn0030608 FBtr0073967 3 1 3 95 X 14968003 14968023 GCCTCCTTGAATACTACTTCC 59 14967383 14967401 CAGAACTCTTGCCATTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32595 FBgn0052595 FBtr0073941 3 1 1 60 X 14612827 14612847 CACTGGTATTCATTTACTGGG 58 14612787 14612807 ATTGTCGTAGGTTAGTACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0469 FBgn0040153 FBtr0113318 3 1 2 178 X 14100668 14100687 CAATAACTTTGCCGACAAGG 59 14099474 14100397 CTCTGGTAACGATGAGCTG 59 NA Drosophila melanogaster 50 ben FBgn0000173 FBtr0073855 2 1 1 60 X 13892369 13892387 CGGAGGACTATCCAATGTC 59 13892411 13892429 TTCGGATGGTAGATCTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33174 FBgn0053174 FBtr0073826,FBtr0073825 3 2 2 81 X 13696194 13696278 TCTCAAGAGCTTGGTTATCC 59 13696322 13696340 TGCAGTGGTGTAGTAATGC 59 NA Drosophila melanogaster 50 Rtc1 FBgn0020909 FBtr0073820 3 1 1 97 X 13652266 13652284 AGACTCCAGCTATCAATGG 58 13652398 13652416 GAACGGTGTAATTGGACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15747 FBgn0030474 FBtr0073766 1 1 1 60 X 13232590 13232608 AGCTGCTCCTCAATTTCAG 59 13232631 13232650 TTCCATTAGACTAGGACCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12716 FBgn0030439 FBtr0073752 2 1 1 118 X 12869516 12869597 GAAACAAGTCCTGAGAATCC 58 12869417 12869435 TTGAAATTGAGGCGTTGAG 58 NA Drosophila melanogaster 50 CG32649 FBgn0052649 FBtr0073697 2 1 1 60 X 12794118 12794136 CTATGCAAGGTGAGAGGAG 59 12794076 12794095 TGGAATCTTGTATGCTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489 2 8 12 100 X 11291936 11292011 ATATAACCAGAGAACCGCG 59 11292075 11292093 GGACACATAGATACCCTGG 58 NA Drosophila melanogaster 50 CG1737 FBgn0030293 FBtr0073453 3 1 1 60 X 11248059 11248079 AAGAAGATCACCTGCTATGAG 59 11248101 11248119 TCGACAACATATCCTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11106 FBgn0030280 FBtr0073446 3 1 1 73 X 11096549 11096568 CAATTACTTTCAACGGATGG 57 11096604 11096622 ATTGAGGACAGTAGTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15203 FBgn0030261 FBtr0073392 3 1 1 114 X 10960950 10961813 ATACTTATCGAGGGTTGCG 59 10961890 10961909 TTTGCTTGCACTTGTATCTC 58 NA DesignRelaxed Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 1 8 9 94 X 10692567 10692660 GAATAAGGGTGAAATTTGCC 57 10692492 10692510 GCATGATCCGTTTAATGGT 58 NA Drosophila melanogaster 50 CG2898 FBgn0030195 FBtr0071445 2 1 1 62 X 10269618 10269636 CATCCGTCAACAGTCTACC 59 10269662 10269680 TTCGTTATTACAGCACAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-lys FBgn0027084 FBtr0071367,FBtr0071366 2 2 2 71 X 9501701 9501721 CGCTATCTTGATCTCATTCTC 58 9501589 9501668 GTACGAGATGATCTTGGCA 59 NA DesignRelaxed Drosophila melanogaster 50 su(r) FBgn0086450 FBtr0071338,FBtr0071337 2 2 2 230 X 9091234 9091310 ATCGATGATGACATGTGCA 59 9090948 9090968 GGTGTAGAAGATCTTCTCCTC 59 NA DesignRelaxed Drosophila melanogaster 50 His3.3B FBgn0004828 FBtr0071345,FBtr0071347,FBtr0071346 1 3 3 217 X 9048445 9048463 GATTTCAAGACCGATCTGC 58 9048107 9048125 ACGACAGTGATCGAATCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0071296,FBtr0112965,FBtr0071294,FBtr0071298,FBtr0071295,FBtr0071297 2 6 6 87 X 9008595 9008676 ACGAGGATGAGTTTGAACG 59 9008727 9008745 CTTGTGGTCGAGACTTGAG 59 NA Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071271,FBtr0071270 2 2 10 101 X 8770411 8770431 CGTGTAAAGAAGTATGTGGAC 58 8770084 8770349 TGATCCAGTCATATCATCGG 58 NA Drosophila melanogaster 50 CG12065 FBgn0030052 FBtr0071217,FBtr0071215,FBtr0071214,FBtr0071216 2 4 4 96 X 8481474 8481494 ACTACACGGACTATAAGAAGC 59 8481552 8481632 GGTTTCTCCTTGCTATTGC 58 NA Drosophila melanogaster 50 CG1440 FBgn0030038 FBtr0071197,FBtr0112961,FBtr0112962 2 3 3 92 X 8334502 8334583 CGTATCCGTGGATAAGAGC 59 8334639 8334657 TTCATCACCAGATAGCCCT 59 NA Drosophila melanogaster 50 CG32712 FBgn0052712 FBtr0071247 3 1 1 61 X 8327293 8327311 CATCAGCATGAACCATTCC 58 8327250 8327270 TAGTACAAGTGGTAGACAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15345 FBgn0040928 FBtr0071176 1 1 1 60 X 8291639 8291661 CTCTCAGAGGAAGAAGATTACAG 59 8291601 8291619 TCTCTTCAATGTCCTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sws FBgn0003656 FBtr0071125 3 1 2 83 X 7854138 7855220 TCACACCAATGGATCTCTG 58 7854073 7854092 TCTTTAGGATCGCATAACGG 59 NA Drosophila melanogaster 50 CG15324 FBgn0029966 FBtr0071087 3 1 1 60 X 7769159 7769177 CGATCATACTTTCGCTTGG 58 7769200 7769219 CATTTCTCTTGTACGGACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33691 FBgn0064122 FBtr0091671,FBtr0091673 1 2 3 60 X 6771757 6771777 CGCTAGCTAGCAATAATTCAG 58 6771798 6771817 TTGTTATTCCGTCGTACTCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 C3G FBgn0026145 FBtr0070975,FBtr0070976 1 2 2 91 X 6677060 6677078 ATCATGAAGCATCTACGCA 59 6676920 6677007 CACTCCAATCTTCTTATGGGA 59 NA Drosophila melanogaster 50 CG5928 FBgn0029836 FBtr0100295,FBtr0070871 1 2 2 80 X 5962705 5963096 ACCTTTATTCAGAAGCCCA 58 5963139 5963158 TTTGCCTCCTATGATATCCA 57 NA InUTR Drosophila melanogaster 50 CG3726 FBgn0029824 FBtr0070858 1 1 1 141 X 5835115 5835201 TAAGCATCCTTACAGTGGC 59 5835359 5835378 CAAGTAGGGATTGGTTTGGA 59 NA Drosophila melanogaster 50 mof FBgn0014340 FBtr0070829 2 1 1 60 X 5768536 5768555 AGCAGATCACAATCAAGGAG 59 5768495 5768513 TAGATAATGTCGTCGTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3033 FBgn0029818 FBtr0070830 2 1 1 109 X 5765455 5765473 TGACATTCTACCAGTTCCC 58 5765295 5765382 GCCATAAATCACGGAATCG 59 NA Drosophila melanogaster 50 CG12239 FBgn0029810 FBtr0070814 3 1 1 65 X 5686776 5686794 GAAGATCGAGAAGACCGAC 59 5686822 5686841 ATCTTCACGAGATTCACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070738,FBtr0070739,FBtr0070740,FBtr0100408 1 4 4 214 X 4962802 4962820 CAGTATGCCTACAAGGAGC 59 4963094 4963112 TAATTGTGGACTGGCATGG 59 NA DesignNoJunction Drosophila melanogaster 50 cib FBgn0026084 FBtr0070641,FBtr0070639 2 2 3 67 X 4004033 4004192 CGATAAGGAAGCCATCGAG 59 4004223 4004241 CATCAAAGTTCTCGATGCC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG10803 FBgn0029666 FBtr0070569 2 1 1 99 X 3381473 3381494 CATAGCGTCTACGAAATATCCT 59 3381552 3381638 AAAGGTATTTGCCCAGATAGG 59 NA Drosophila melanogaster 50 Sgs4 FBgn0003374 FBtr0070524 1 1 1 60 X 3144872 3144890 ACCCAAGTGTAAATCCGAC 59 3144914 3144932 CTTTGGCTTAGATGTGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2694 FBgn0024991 FBtr0070482,FBtr0070483,FBtr0070481 3 3 3 104 X 2609385 2609403 GAAACCGACATGAAGACAC 58 2609550 2609569 CATCTCGTTCAGATTCTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 Ilp6 FBgn0044047 FBtr0070406 1 1 1 107 X 2226037 2226055 GAATACGAACAGAGACGCA 59 2225870 2225969 GAAACTGTTGGGAAATACATCG 59 NA Drosophila melanogaster 50 CG34052 FBgn0054052 FBtr0100107 2 1 1 96 X 2216179 2216198 GTACGGTACAGTAAGGACTG 59 2216038 2216056 TTTGGGCTGAAGTACAGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Nmd3 FBgn0023542 FBtr0070425 2 1 1 63 X 2077150 2077168 CTACCACGAGTTTCTTGAC 57 2077105 2077123 ATAGATGTTGACCTGACCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Actn FBgn0000667 FBtr0070343,FBtr0070345 1 2 3 80 X 1924296 1924317 GAGAATCTTAATACTGCCTTCG 58 1923949 1924258 GTTGATCAAATCATCTGGATCC 59 NA Drosophila melanogaster 50 CG3740 FBgn0023530 FBtr0070283 1 1 1 163 X 1562735 1562753 TCATCCTAAACGACCTGAC 58 1562590 1562608 CACGAATGACATGACAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 br FBgn0000210 FBtr0070267 2 1 7 138 X 1531145 1531163 CCCAATATCGATCCCTCAG 58 1554704 1554722 TTAGAGAACGCACGTTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 pck FBgn0013720 FBtr0070256,FBtr0070255 1 2 3 83 X 1365311 1365329 TTAAGGACTTCGTGTACCC 58 1365376 1365453 TAACGTAATACTCGTGCGA 58 NA Drosophila melanogaster 50 CG32813 FBgn0052813 FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219 1 4 6 222 X 1283913 1283931 CAACCATTCGTTCATGGAC 59 1284335 1284353 GATAAGGATCACGTCCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3638 FBgn0026875 FBtr0070248,FBtr0070246,FBtr0070247 1 3 4 168 X 1120310 1120891 CATCGAGTTGCAAAGTCTG 59 1120160 1120178 CATCAGCGTAATGATGACC 58 NA Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 2 8 8 61 X 551358 551376 GGATGATGAGAGCAAGGAG 59 551401 551419 TTAGGAAATCTGCATCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ewg FBgn0005427 FBtr0100582 2 1 8 186 X 167373 167393 GATCAACTGCTACAAGTACCA 59 165900 167226 AACAATCAGATTGCTGTTGC 59 NA Drosophila melanogaster 50 CG40955 FBgn0085544 FBtr0113957 2 1 1 85 U 9989962 9989980 GAGTCATCGATCCATCAGC 59 9989895 9989913 ATTCCTAGCCAAAGCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40894 FBgn0085532 FBtr0113945 1 1 1 60 U 8953577 8953596 ATGAGTTGATGACGAAACTG 58 8953536 8953557 TCCATTATATCGTAGTCGTCTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41534 FBgn0085674 FBtr0114122 3 1 1 60 U 8549940 8549958 TTACGATGAGTGCAAACGA 59 8549980 8550000 GTAGCAATCTACAAACATCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sv FBgn0005561 FBtr0100344,FBtr0100346,FBtr0100343,FBtr0089327 1 4 7 95 4 1129117 1129138 CCGTTAGTTCCTATTAGTATGC 58 1129194 1129748 GTCAAATGCTAGAGCTGTG 58 NA Drosophila melanogaster 50 CaMKII FBgn0004624 FBtr0089217,FBtr0089218,FBtr0100148,FBtr0089219,FBtr0100146,FBtr0100147 1 6 6 80 4 1068496 1068515 GGATATCTGTCTCCTGAGGT 59 1068342 1068456 GTAAAGAATAACTCCACATGCC 59 NA Drosophila melanogaster 50 toy FBgn0019650 FBtr0089185 3 1 1 84 4 1026627 1026703 CAAACACAGGTGTCATTTCTG 59 1026748 1026767 TAATTGCTTCCCGTTAGGTC 59 NA Drosophila melanogaster 50 CG1909 FBgn0039911 FBtr0089080,FBtr0089079 3 2 2 80 4 606384 606471 CAAGATTATTGTAAGGAGGCC 58 606513 606531 CATGACGCGAATACTTCTC 58 NA Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0100364,FBtr0100365,FBtr0100366,FBtr0089130,FBtr0089131 2 5 5 80 4 370302 370370 GATTCACCGCTTAAAGCAG 59 370240 370259 CTCAGTTGCTAATGCAAGTG 59 NA Drosophila melanogaster 50 Syt7 FBgn0039900 FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475 2 5 6 155 4 323148 325656 TAGTTATAGTCTTCGGGCTG 58 323012 323033 CCAATCAAAGGAGTTCTAAGAC 58 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 1 7 7 82 4 208987 209060 CGGATCATAGACTTACGGA 57 208923 208941 GAAGCATGGTTTAGTCAGG 58 NA Drosophila melanogaster 50 plexB FBgn0025740 FBtr0089179 3 1 1 84 4 53992 56512 GCTGTTTGCTAAGGATATTCC 59 53928 53946 GTCGCTTATTTGTGGAAGC 59 NA Nonspecific Drosophila melanogaster 50 CG1910 FBgn0022349 FBtr0085839,FBtr0085840,FBtr0085838,FBtr0085841 3 4 4 64 3R 27575212 27575230 AGGAGAAGGTACAGACCTC 59 27575317 27575335 CTTGACCTCTTTCTTGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG1750 FBgn0039836 FBtr0085767,FBtr0085768 1 2 2 125 3R 27079897 27079915 GATCTGCATGCATCTTTGG 59 27079735 27079808 AATCTTGGGAGCATAGCTG 59 NA Drosophila melanogaster 50 chp FBgn0000313 FBtr0085778 2 1 1 81 3R 27032428 27032501 CAATTCGCTGATGAACACG 59 27032365 27032383 GATCCAGTTGTAGCTGAGG 59 NA Drosophila melanogaster 50 su(rdgB)69 FBgn0086704 FBtr0085782,FBtr0085781 1 2 2 87 3R 26987045 26989273 CATACTGCTGAGATACGGC 59 26986976 26986994 ATCCTCGATGAGTTTGTCG 59 NA Drosophila melanogaster 50 tmod FBgn0082582 FBtr0085659,FBtr0085661,FBtr0085663,FBtr0085658,FBtr0085662,FBtr0085660 3 6 7 190 3R 26398542 26398560 CACCATCGAGGAGTTTAGG 59 26398787 26402912 GTTTCACACGTATTCTGTCG 59 NA Drosophila melanogaster 50 hdc FBgn0010113 FBtr0085621,FBtr0085619 1 2 3 138 3R 26105941 26105959 GAGGTCGAACTCTATTCCG 59 26134965 26183984 CCTCGTCCTCAATCTTGAC 59 NA Drosophila melanogaster 50 RpS7 FBgn0039757 FBtr0089425,FBtr0089422,FBtr0089424 3 3 4 205 3R 26034349 26034367 TCCAAGATTATCAAGCCCG 59 26034098 26034117 ATCTTCTGGAACACCTTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9747 FBgn0039754 FBtr0085573 2 1 1 85 3R 26011994 26012159 TACGATAAGCGGATCATGC 59 26011927 26011946 AATACGTGGTGGTAGTTGTG 59 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 3 8 8 148 3R 24962000 24962021 GCACAATCATACGTATTTCAGG 59 24962129 24962212 AGTAGGGCTTATCATTGGTG 59 NA Drosophila melanogaster 50 Doa FBgn0053553 FBtr0091524,FBtr0091526 1 2 9 124 3R 24746881 24746902 CATCTTGTTCGAACTGTATCTG 59 24746987 24747076 AAAGAGTATGATTGCGTGC 58 NA Drosophila melanogaster 50 CG33203 FBgn0053203 FBtr0114574,FBtr0085348 2 2 2 88 3R 24700983 24711990 ATACTGACACATGCCATACC 59 24700914 24700932 AAGGACAGGAACTTGTAGC 59 NA Drosophila melanogaster 50 CG5514 FBgn0039560 FBtr0085252,FBtr0085253 3 2 2 110 3R 23765359 23765436 TACCTTCGAAGGTACTGAG 57 23765510 23765528 TCTATGTTTGCCTTCACCT 58 NA Drosophila melanogaster 50 CG18437 FBgn0039536 FBtr0085214 2 1 1 81 3R 23497485 23497503 AAAGGACATGGACGTAACC 59 23497548 23497623 GACCAAGGATCGATAACCC 59 NA Drosophila melanogaster 50 Lerp FBgn0051072 FBtr0085097,FBtr0085099,FBtr0114572 3 3 3 103 3R 22686815 22686833 CGATTCCTGCACCTATCAG 59 22686665 22686748 AACTCAGATCCAACAGCTC 59 NA Drosophila melanogaster 50 CG6447 FBgn0039437 FBtr0085055,FBtr0085056 3 2 2 220 3R 22450655 22450673 AGATCTTGCCCAGAAACTG 59 22450453 22450471 TCTGAGCATTAGCCTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gro FBgn0001139 FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963 2 5 5 103 3R 21870081 21870172 CGCCATTATGTTATGTACTACG 59 21870236 21870254 AGTAGCTGGTTGATCAGTG 58 NA Drosophila melanogaster 50 CG31091 FBgn0051091 FBtr0084941 2 1 1 191 3R 21727246 21727331 AGGAAGAACTAATTCGACCG 59 21727485 21727503 GTGATTAGCTCAGTTGGGT 59 NA Drosophila melanogaster 50 Fur1 FBgn0004509 FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986 3 5 6 197 3R 21182169 21182187 GAGACGAGGAGACATTCAG 59 21180028 21181955 GTGATTTGTGCCATATAGCG 59 NA Drosophila melanogaster 50 CG10425 FBgn0039304 FBtr0084867 1 1 1 147 3R 21087199 21087281 CTTAAGGATGCCCTGAAGG 59 21087070 21087088 TAACTATTCGCAGTGGTCC 59 NA Drosophila melanogaster 50 fd96Ca FBgn0004897 FBtr0084770 1 1 1 60 3R 20910307 20910325 ATAATGTTACCCTCGTCGC 59 20910349 20910367 ATTCTATTCTGCACCTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6422 FBgn0039261 FBtr0113281,FBtr0084795,FBtr0084794 2 3 3 94 3R 20864033 20864153 TGAAGTCTCTGGCAATGAC 59 20863957 20863978 CCTTGTTCATATTGTTCCATGG 59 NA Drosophila melanogaster 50 CG11781 FBgn0039259 FBtr0084797 2 1 1 61 3R 20850318 20850336 TGACCAATCAGTTCATGGG 59 20850275 20850293 GCCATAGAGGAATGTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6643 FBgn0039208 FBtr0084647,FBtr0084648 1 2 2 90 3R 20378367 20378626 TATTGGTGTGAGGCTACTG 58 20378680 20378698 GGTTCTCGTCTTTCTTGGA 59 NA Drosophila melanogaster 50 orb FBgn0004882 FBtr0100228,FBtr0084386,FBtr0084385,FBtr0084384,FBtr0100227 1 5 5 80 3R 19092492 19092510 TGGATGATTCTCACTGTGG 58 19092375 19092450 GAATGACTTCAACATCCTTGG 59 NA Drosophila melanogaster 50 CG7029 FBgn0039026 FBtr0084312,FBtr0113270,FBtr0113271,FBtr0113269 1 4 4 92 3R 18614228 18614308 ATAGTTTCTATGCGGATCCC 59 18614363 18614381 TGCGTTTCACTATGTCCTC 59 NA Drosophila melanogaster 50 loco FBgn0020278 FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273 3 4 4 86 3R 18446567 18446652 GCACCAAGATGAACTACTC 57 18446499 18446517 AAGTCGAAGTTGATTTCGG 58 NA Drosophila melanogaster 50 pinta FBgn0038966 FBtr0084297 2 1 1 121 3R 18249662 18249680 CTCATCAAGAGATCCGTGG 59 18249502 18249580 GGCGTCATGAATATTCTAAAGG 59 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067 1 1 22 80 3R 17200833 17200851 CAGTCCCAGAACTACAGTG 59 17181269 17200790 TTCACCTAAATCTTGAGCCT 58 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 2 22 22 85 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202453 17202548 GTTCAGGAATACGATAGCG 57 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 2 22 22 85 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202453 17202548 GTTCAGGAATACGATAGCG 57 NA Drosophila melanogaster 50 CG3308 FBgn0038877 FBtr0084102 3 1 1 101 3R 17097942 17097960 CATGTACCCAAACACAAGG 58 17097798 17097879 CGTTGGAAGGTACAATATCTG 58 NA Drosophila melanogaster 50 CG5802 FBgn0038863 FBtr0084017,FBtr0113259 2 2 2 76 3R 16965292 16965420 GTATTTACAGGTGAGGCCA 58 16965460 16965478 ATCAGCGATAAATGGGTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 TotB FBgn0038838 FBtr0083973 2 1 1 60 3R 16700052 16700073 CTTTAAGAAGATTCTGTCTCCG 58 16700093 16700112 GAGTTCGGTAAAGAATCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Stat92E FBgn0016917 FBtr0089486,FBtr0089485,FBtr0089487 3 3 5 81 3R 16367270 16367415 GAAGACAGGATAATGTCCGA 58 16367208 16367228 GATCTTCGTTGAACTTTAGGG 58 NA Drosophila melanogaster 50 CG10889 FBgn0038769 FBtr0083839 1 1 1 60 3R 15860551 15860570 GATCAACTCACTGATTAGCC 58 15860510 15860528 CTGCTCGATGGTATTTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trem FBgn0038767 FBtr0083840 2 1 1 80 3R 15855662 15855680 AGAACGTTTACCTACTCGG 58 15855541 15855618 ACAAAGATCACAGACATGC 58 NA Drosophila melanogaster 50 CG14305 FBgn0038630 FBtr0083634,FBtr0083636,FBtr0083635 1 3 3 60 3R 14424799 14424819 CTTATGCCACTGTTATAACCG 58 14424841 14424859 GCCAAATGTACTCCATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpb4 FBgn0053520 FBtr0100273,FBtr0083604,FBtr0100275,FBtr0083603 2 4 5 99 3R 14080129 14080147 GACAGAGGAATTGCAACTC 58 14079990 14080008 CATTATGAGACCGTGTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7208 FBgn0038575 FBtr0083618,FBtr0083617 2 2 2 282 3R 14010550 14010568 GAAGAGCTCTATGCTTCTG 57 14010222 14010240 AAATATGGAAGCCATGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 PP2AB FBgn0042693 FBtr0083556,FBtr0083555,FBtr0083553,FBtr0083552,FBtr0083554 2 5 5 132 3R 14001239 14001330 GGCGATCAATATGTTTGCT 58 14001426 14001444 GTAAACGAGTTGCAGATGC 59 NA Nonspecific Drosophila melanogaster 50 CG7217 FBgn0038570 FBtr0100619 3 1 2 105 3R 13991872 13992085 ATGGTGAAAGTAGGAGACTC 58 13991786 13991804 AGATGATCACCTTCTTGCC 59 NA Nonspecific Drosophila melanogaster 50 Brf FBgn0038499 FBtr0083452 1 1 1 80 3R 13216263 13216281 TATGAGCTTGGTCGTACCT 59 13202972 13216220 GATGTATAAACACGGGTCCA 59 NA Drosophila melanogaster 50 Abd-B FBgn0000015 FBtr0083382,FBtr0083385,FBtr0083384,FBtr0083381,FBtr0083383 3 5 5 122 3R 12755454 12755472 CGTACTCGAAGTTCCAGAC 59 12755293 12755368 ATATCTTGACCTGTCGCTC 58 NA Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083348,FBtr0083352,FBtr0083351,FBtr0083350,FBtr0083347,FBtr0083349 3 6 6 66 3R 12558920 12558938 GAGCCTACAAACAGGACTG 59 12558872 12558891 TTCCAAATGTCTTTGTAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cad89D FBgn0038439 FBtr0083306 1 1 1 80 3R 12316385 12316403 CTCATCACCAATCTCACCA 58 12316239 12316344 GTTGATCTCTTCTATGACAGGT 59 NA Drosophila melanogaster 50 CG14876 FBgn0038368 FBtr0083192 3 1 1 264 3R 11659534 11659552 TAGGACTCCAAAGTTTCGG 58 11658994 11659306 TTTAGCTGGAATGGGACAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG34274 FBgn0085303 FBtr0112469 2 1 1 84 3R 11558092 11558162 TGCTTTATCAAGTTACGCG 58 11558210 11558228 CACGCAGATAATGTTCGTC 58 NA Drosophila melanogaster 50 CG5038 FBgn0038324 FBtr0083089 3 1 1 60 3R 11179037 11179055 AGTTCTCTATCATCGCTGG 58 11179079 11179097 TATTGCAGTCCGATAAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pr-set7 FBgn0011474 FBtr0082929,FBtr0082928,FBtr0082930 1 3 3 97 3R 10142502 10142520 CGTTTGATGAAGGTCACTC 58 10142581 10142670 AAGGGAACTCCTATTGTGC 59 NA Drosophila melanogaster 50 CG34383 FBgn0085412 FBtr0112624,FBtr0112623 1 2 4 84 3R 9582377 9582623 AGATCAGGAACTTGGATGTC 59 9582670 9582688 CTCCTCAACTGAATCAGCA 59 NA Drosophila melanogaster 50 CG7381 FBgn0038098 FBtr0082727,FBtr0082726,FBtr0082725 2 3 3 81 3R 8795404 8795425 GATGACGAGGATATAAAGACCT 58 8795254 8795362 TGCTGCCATACTTCTTCTC 59 NA Drosophila melanogaster 50 CG14394 FBgn0038079 FBtr0113227,FBtr0114499 3 2 6 203 3R 8522009 8522181 CATAGTCATGCAGGTCCTG 59 8522348 8522366 TTTAGAAAGTCGCCCTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG6225 FBgn0038072 FBtr0082649,FBtr0113225 3 2 2 82 3R 8484654 8484732 ACTCCTGTGATTAAGTCATACG 59 8484773 8484793 ATGCCCAGACTAATCTTTGAG 59 NA Drosophila melanogaster 50 Pp1-87B FBgn0004103 FBtr0082595 2 1 1 60 3R 8251249 8251267 CATTCTGCTCGAGCTAGAG 59 8251207 8251227 GTAGTACTGTCCATGGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 svp FBgn0003651 FBtr0082564,FBtr0082563,FBtr0082562 3 3 3 180 3R 8116037 8116055 TTGTCGATTGAAGAAGTGC 58 8119848 8119866 GAGCGAGATGTAGGAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 Ect3 FBgn0037977 FBtr0082487 2 1 1 87 3R 7827144 7827218 GGTGACAACCTATGTGGAG 59 7827267 7827287 TATAAAGTGTTCCAGATCGGC 59 NA Drosophila melanogaster 50 SelR FBgn0037847 FBtr0082296,FBtr0082294,FBtr0082292,FBtr0082293,FBtr0082295,FBtr0082291 1 6 6 103 3R 6692606 6692624 AAGGTTACGGTGAACAAGG 59 6692406 6692539 TTGTAGCAACCTGTGAAGG 59 NA Drosophila melanogaster 50 hth FBgn0001235 FBtr0100455,FBtr0082254,FBtr0082255,FBtr0100454,FBtr0082253,FBtr0082256 2 6 6 91 3R 6417178 6419287 GAAGTCGACTCACTGATGG 59 6411625 6411645 CAGAAGTTATCGCATAACTCG 58 NA Drosophila melanogaster 50 Cyp12e1 FBgn0037817 FBtr0082250 2 1 2 177 3R 6261574 6261593 CTATTTCCACATTGGGAACG 58 6261733 6261851 CTTGTCAGGACTAGGATCC 58 NA Drosophila melanogaster 50 tws FBgn0004889 FBtr0082186,FBtr0082187 3 2 8 87 3R 5955360 5960550 AAGCCAGCAAGTAATGGAG 59 5955291 5955310 ATATGATGTCTGCATCCGTG 59 NA Drosophila melanogaster 50 CG3934 FBgn0037783 FBtr0082176 1 1 1 96 3R 5886262 5886280 GACATCCAATTTGTTGCCA 58 5886452 5886472 CTTCTAGGTCATAGGGTATGG 58 NA DesignNoJunction Drosophila melanogaster 50 RpS29 FBgn0037752 FBtr0082137 3 1 2 100 3R 5604291 5604310 AGATTCTTTGATGGAACCGA 59 5604373 5604391 ATGTTAAGGCCATACTTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dh FBgn0012344 FBtr0112870 1 1 2 234 3R 5466244 5469213 CCGTAATCGCTATACTCCA 58 5469410 5472749 AAAGTCATCCTGTGAGTTCC 59 NA DesignRelaxed Drosophila melanogaster 50 Fps85D FBgn0000723 FBtr0082051,FBtr0082052 3 2 4 103 3R 5199589 5216617 CCTGAATCATCTCACCGAC 59 5199504 5199524 TTATGTAGTTCTCCTCGAAGC 59 NA Drosophila melanogaster 50 Nmdmc FBgn0010222 FBtr0081996,FBtr0081997 2 2 2 289 3R 4868835 4868854 GAATGTCAGTCTACCGATGG 59 4868498 4868583 GGCGAACTTCTTCAAAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG11963 FBgn0037643 FBtr0113206,FBtr0081957 3 2 2 122 3R 4767443 4767462 CATTCTGGTCAACATCTTCG 58 4767547 4767633 ACTTTGGTTCCCTGAAGAC 59 NA Drosophila melanogaster 50 CG8379 FBgn0037638 FBtr0081922,FBtr0081921 2 2 2 80 3R 4652246 4652266 CTATGATGAGCTCTACTACGA 57 4652308 4652380 GTTGTATAGCGAAGAACCA 57 NA Drosophila melanogaster 50 hb FBgn0001180 FBtr0081950,FBtr0081951 1 2 2 60 3R 4519197 4519215 ACGATGATACCAACATCCG 59 4519155 4519174 TTGTAGTTCTTCATCTTGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11693 FBgn0037570 FBtr0081860 3 1 1 68 3R 4135442 4135461 ATTAACCACGACGAATTCGA 59 4135393 4135411 TATGTAATCGGAGGAGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7800 FBgn0037552 FBtr0081795 1 1 1 60 3R 4044626 4044647 GATATTCCCAAACTTCTAACGG 58 4044666 4044686 TATTCTCGGATAGATCCAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11035 FBgn0037544 FBtr0081816 2 1 1 60 3R 3858393 3858414 CAATCAGGCTTATGAGATTCTG 58 3858354 3858373 GATTCCCTTGTCGTAAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst84Dc FBgn0004174 FBtr0081587 2 1 2 82 3R 3190327 3190345 TTTGGCTTCTAAAGACCGT 59 3190206 3190224 CACAGCAGTAATATCCGCA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Antp FBgn0000095 FBtr0081648,FBtr0081652,FBtr0081651,FBtr0081649,FBtr0081650,FBtr0081647,FBtr0081656,FBtr0081654,FBtr0081653,FBtr0081655 1 10 11 255 3R 2734435 2734453 AGAACCATCACAACATGGG 59 2724212 2724230 AGCTCTAGAGTCTGGTACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2051 FBgn0037376 FBtr0078670,FBtr0078669 3 2 3 81 3R 1613834 1613948 GTGTTACTTCTTGAGCTACGA 59 1613773 1613792 GTATACGGTGGTGTAACCAG 59 NA Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078673,FBtr0078676 1 2 5 85 3R 1587421 1587439 TTCATTAGCTGGAAGAGCG 59 1586951 1587374 GTACATACCCAGTTATGTCCG 59 NA Drosophila melanogaster 50 CG31542 FBgn0051542 FBtr0078786 1 1 1 100 3R 1195951 1195969 GAAGAAGTGCGTCATTCAG 58 1196032 1196051 TGTGAGCGTTATAATCTGTG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9776 FBgn0027866 FBtr0078956,FBtr0078955 3 2 2 112 3R 155853 155871 AAGTCCAAGAAAGACGAGG 59 155694 155715 GCATCTATTGTACTACGTTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9779 FBgn0037231 FBtr0078958 2 1 1 151 3R 136072 136145 AATCAGCTATCCACCTTGC 59 135939 135957 ATCTCCTCAATAATGCCGG 59 NA Drosophila melanogaster 50 nAcRalpha-80B FBgn0037212 FBtr0113189 2 1 2 80 3L 23232107 23255816 ATGGGTTTAAGGTTGATCTG 57 23255859 23255877 ATTCAGATAGGTCCACACC 58 NA Drosophila melanogaster 50 CG7632 FBgn0037071 FBtr0078339 1 1 1 60 3L 21298964 21298982 TCTGTTCGAATACCACGAG 59 21299006 21299024 CTTCTCTGGCTCGTTAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ppl FBgn0027945 FBtr0078412 1 1 1 83 3L 21273951 21273969 AGCAGTTGCTATGAGAAGG 59 21273825 21273843 CTGATCCTCGGTCATAAGG 58 NA DesignNoJunction Drosophila melanogaster 50 siz FBgn0026179 FBtr0111038,FBtr0078289,FBtr0078290 3 3 3 119 3L 21066241 21066320 TCATCCGATACGATCTTCG 58 21066401 21066421 GCGCAGATTCTTGATAAAGTC 59 NA Drosophila melanogaster 50 CG5059 FBgn0037007 FBtr0078218,FBtr0078216,FBtr0078217,FBtr0078219 2 4 4 117 3L 20508983 20509001 ATGATGAGCTCAGAAACGT 58 20508709 20508828 TCAATGTTCCAGCTACTGG 59 NA Drosophila melanogaster 50 CG14088 FBgn0036858 FBtr0075016 1 1 1 60 3L 19263420 19263438 CTGCATTCTTCAGTAACGC 59 19263378 19263396 ATTAGGCCCATGTTATTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11619 FBgn0036836 FBtr0075046 1 1 1 60 3L 18979532 18979553 GGGATGAGTATATGGATCTGAG 59 18979493 18979511 GACTGAACGAAGTTGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7341 FBgn0036777 FBtr0075124,FBtr0075123 2 2 2 60 3L 18113820 18113839 TTCCTAAAGATCTTCAAGGC 57 18113862 18113880 TAATCCTTGAGACCACTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13728 FBgn0036716 FBtr0075238 2 1 1 60 3L 17373521 17373539 GGAAATCGATCCAGTACCA 58 17373479 17373499 GATGCTCAAAGTCAATAAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9674 FBgn0036663 FBtr0075341,FBtr0075344 1 2 4 87 3L 16785600 16785618 TAAGAATGCCGGATTACCC 59 16784781 16785549 AACAATCACACGTGATCGT 59 NA Drosophila melanogaster 50 CG4753 FBgn0036622 FBtr0075422,FBtr0075421 3 2 2 89 3L 16372431 16372449 CATTCTGCACTACTTGGTC 58 16372300 16372378 AGGCTATAGAATCCTCCCA 58 NA Drosophila melanogaster 50 CG5018 FBgn0036578 FBtr0075484 3 1 1 187 3L 16219811 16219829 TGTATGTGTTGGAGAGGGA 59 16219414 16219432 GTTGACAAGTTCGTTAGGG 58 NA DesignNoJunction Drosophila melanogaster 50 brm FBgn0000212 FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523 2 4 4 160 3L 15964327 15964406 GATACCATTCTAGGTCGAGG 58 15964186 15964204 CGATTCTTACGCTTTCGTC 58 NA Drosophila melanogaster 50 comm FBgn0010105 FBtr0075579 2 1 1 60 3L 15715867 15715887 GGTGGATAATTCAGATTCCGA 59 15715827 15715846 TAAACTTTGTGCTACTGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6854 FBgn0036478 FBtr0075635 3 1 3 123 3L 15101947 15101967 TTTATTCACGACATCGAGGAG 59 15102052 15102449 TGAGAACGATCTTTGGCAG 59 NA Drosophila melanogaster 50 CG13476 FBgn0036441 FBtr0075687,FBtr0075686 1 2 2 70 3L 14698767 14698788 CAGAAAGCTCTAGTTGATATCG 58 14698819 14698837 GCATTATGGATTGTGTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8100 FBgn0036410 FBtr0075779 3 1 1 60 3L 14077499 14077517 CCTATTCCAACCGATCCTC 59 14077541 14077559 CTAGGCTCAGATAAGCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32138 FBgn0052138 FBtr0075776,FBtr0075775,FBtr0114573 1 3 3 80 3L 14054599 14058180 GATATGCGATCAAGAAATGGTG 59 14058221 14058239 TTTGGGTCCAGATATGTGC 59 NA Drosophila melanogaster 50 CG14120 FBgn0036321 FBtr0075868 3 1 1 60 3L 12879263 12879281 AGGACTACATACTGTGCCA 59 12879304 12879323 TCTTTGTACCAAGTTAGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11009 FBgn0036318 FBtr0075934 3 1 1 215 3L 12843890 12844026 GCAATTGAATATGGTCAAGC 57 12844204 12844222 CATATAGACCGTATTCGGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG17667 FBgn0036312 FBtr0075926,FBtr0075925 2 2 2 113 3L 12787406 12787490 AGACAAGGATGTCTTTCAGG 59 12787566 12787584 AGTAGCGTTAGTTCCTTGG 58 NA Drosophila melanogaster 50 CG32112 FBgn0052112 FBtr0075917,FBtr0075915,FBtr0075916 1 3 3 80 3L 12737069 12737147 TTTACAACTGGTGTCATGAG 57 12737190 12737208 TTCTCTGTACTGTCCATCC 57 NA Drosophila melanogaster 50 CG6404 FBgn0027615 FBtr0076271,FBtr0076272 3 2 2 138 3L 10877848 10877866 CTAAGAAGGGATTCGTCGG 59 10877654 10877673 AACTTGTACGTCTTGACCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32046 FBgn0052046 FBtr0076409 2 1 2 182 3L 9728380 9730036 TTTGTCCAGAAGTAAGCCC 59 9728216 9728234 GTGGAAATAATGGTGTGCC 59 NA Drosophila melanogaster 50 CG16717 FBgn0036028 FBtr0076392 1 1 1 60 3L 9673760 9673778 TGTCTTCGGACATGTACAC 59 9673802 9673820 CACAAAGATGATCCTGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4452 FBgn0035981 FBtr0089493,FBtr0089494 1 2 3 71 3L 9361078 9361096 ATGTACTTACTGCCGTTCG 59 9361218 9361236 TAATGTTCGCACTTCTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32040 FBgn0052040 FBtr0076440 1 1 1 60 3L 9348254 9348273 AATCGTTAAAGAAACGCCTG 59 9348293 9348314 AAGTAGCTATCGTTATCATCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6673 FBgn0035906 FBtr0076653 2 1 2 60 3L 8515816 8515834 TGCTGACTACATGATTTGG 57 8515774 8515792 ATCCAGAGTGTACTTGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12027 FBgn0035585 FBtr0073372 3 1 1 69 3L 5011904 5011922 GCTGAAGGAAGTCACTGAG 59 5011853 5011871 AAACTCGAGCATATCCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32235 FBgn0047330 FBtr0073355 1 1 1 216 3L 4860053 4860071 AAAGCAGGATTCAGGTTCC 59 4859855 4859875 CTAATGCCAAGATCAATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11349 FBgn0035550 FBtr0073305 3 1 1 60 3L 4474283 4474302 AGCATTTGATCCTTCTACAG 57 4474325 4474343 TCTTTGGTTAGAAACACCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nAcRbeta-64B FBgn0000038 FBtr0073300 3 1 2 69 3L 4429770 4429790 GCCGTTATGTAATCGTAAAGG 59 4429820 4429839 ACGGTTAGCAGAGTTAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cip4 FBgn0035533 FBtr0073339,FBtr0113138 1 2 2 80 3L 4327037 4327055 ATTAGAGGCACGATGAGTG 59 4325402 4326994 CAGGGAATTCTTATTGCTGC 59 NA Drosophila melanogaster 50 CG1309 FBgn0035519 FBtr0073229 1 1 1 80 3L 4260253 4260378 ACTTATGAGACCCATGCTG 59 4260421 4260440 ATGGTCTTAACCTTGTAGCG 59 NA Drosophila melanogaster 50 ago FBgn0041171 FBtr0073246,FBtr0073247,FBtr0073245 2 3 3 100 3L 4247723 4247742 AAATTGTGGGACGTTAAGAC 58 4247576 4247660 GTGTCGTTTGCTCTAATCC 58 NA Drosophila melanogaster 50 CG32252 FBgn0052252 FBtr0073251 2 1 1 73 3L 4222186 4222204 GAATGCAATGTGACCTGTG 59 4222131 4222150 GCTTCACATGATTGAACCAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Gad1 FBgn0004516 FBtr0073276,FBtr0073277,FBtr0073275 1 3 3 80 3L 4082635 4084743 ACTGACGGCATATGATCTC 58 4082573 4082591 ACATCGATTACCTTCAGCA 58 NA Drosophila melanogaster 50 CG10853 FBgn0035478 FBtr0073164 3 1 1 64 3L 3947970 3947988 CTAATATCCCTGGCCTTGG 59 3948073 3948091 ACCTTCTTTATCGGAGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14974 FBgn0040694 FBtr0073140 3 1 1 101 3L 3620873 3620892 GTTACAGAAGTCCAAAGGAG 57 3620682 3620751 CTATGGAGCAATTATCTGCC 58 NA Drosophila melanogaster 50 CG14961 FBgn0035439 FBtr0073069 2 1 1 61 3L 3330612 3330630 GTACATCCAGTCCTACCAC 58 3330711 3330729 GATTCGATGACTCGTAGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14968 FBgn0035431 FBtr0073088 3 1 5 188 3L 3300880 3301006 GATTACGGTAGAGATATGTTGG 57 3300038 3300731 TGTACTTCACCTTGAACGT 58 NA InUTR Drosophila melanogaster 50 CG14965 FBgn0035414 FBtr0073109 3 1 1 60 3L 3192015 3192034 GGTGAGACACAGAATTTGGA 59 3191974 3191994 CCTCTTCTGTCAACTCTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996 2 6 15 81 3L 3083796 3085208 TCGCCACTTATATGGTCAC 59 3085252 3085271 TATGGTGCATAGAAGTTGGG 59 NA Drosophila melanogaster 50 CG33232 FBgn0035347 FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920 1 4 4 80 3L 2495895 2495913 GAGTACACCGAAATGAGGT 58 2495954 2496034 GTTGGCATTATGACCATATGAC 59 NA Drosophila melanogaster 50 sls FBgn0086906 FBtr0072849 2 1 2 81 3L 2046155 2046290 TATTTGAACGTCCTGGACC 59 2046092 2046110 CCGTCAGGAGTATGAATCG 59 NA Drosophila melanogaster 50 CG13931 FBgn0035258 FBtr0072802 1 1 1 78 3L 1701475 1701493 TTCAATCACTACTCGCGTC 59 1701415 1701433 GGTCTACAAAGTCGTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aplip1 FBgn0040281 FBtr0072627 3 1 2 252 3L 1197306 1197520 CAAGAAATCTTCCATTCTGC 57 1197735 1197753 CGACATGCTCTTAAAGTCG 58 NA DesignRelaxed Drosophila melanogaster 50 trio FBgn0024277 FBtr0072648,FBtr0072646,FBtr0072645,FBtr0072649,FBtr0072644,FBtr0072647 1 6 6 80 3L 998874 998892 GAATACATAGTCAGTGCCC 57 998720 998831 CAAGTTACTCAGATCCAGAC 57 NA Drosophila melanogaster 50 Glut1 FBgn0025593 FBtr0072615 2 1 6 134 3L 972277 972295 ACCTTTCGATGATCTCACC 59 972393 973831 AATTGGACACTGGAAACAC 58 NA Drosophila melanogaster 50 CG34267 FBgn0085296 FBtr0112462 2 1 1 120 3L 500404 500425 CAAGTGACAATATCTCCAAGTC 58 500242 500260 CTCAATGTAACCAGGAGCA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CR33471 FBgn0053471 FBtr0088081 1 1 1 60 2R 7587372 7587393 CTAAGCTATAGATACTTGGCAG 57 7587333 7587351 AAGTGCCTAATGCAATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33383 FBgn0053383 FBtr0086375 1 1 1 62 2R 15642634 15642652 AATACATCGGTTCTCGTCC 59 15642590 15642608 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Uhg1 FBgn0045800 FBtr0086842 2 1 1 116 2R 13586940 13587368 GTGTCTCAAAGTAAGATGGTC 58 13587628 13587647 GACATTACAGATCCCTAGGA 57 NA Drosophila melanogaster 50 CG30423 FBgn0050423 FBtr0089764 1 1 1 105 2R 20762917 20762935 TTTGCTCACTTCCTTACCG 59 20762765 20762783 TTATCGTCAGGATACTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG3640 FBgn0035042 FBtr0072322 1 1 1 60 2R 20527248 20527266 CCTGGTGATAGTTACCCTC 58 20527290 20527308 GTGCTCTTGGCAATAATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mAcR-60C FBgn0000037 FBtr0072367 1 1 2 206 2R 20271001 20271019 CTACATGACCAACATGGTC 57 20269371 20270773 GAGGTGCATCCTAAATCAG 57 NA DesignRelaxed Drosophila melanogaster 50 enok FBgn0034975 FBtr0072250 1 1 1 66 2R 19993168 19993186 AAGTAATCCACAGCACCAG 59 19993280 19993298 TGAGCTAACTGCAATGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10339 FBgn0034972 FBtr0072288 3 1 1 63 2R 19967146 19967164 TTGGTCTTCAAGCAGAAGG 59 19967101 19967119 AGAACCCGAAGATGTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dcp1 FBgn0034921 FBtr0072223 2 1 1 65 2R 19776668 19776686 AACGATAAGGAGTTTGCCA 59 19776621 19776639 CAGCAGTAGATTGGAACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9850 FBgn0034903 FBtr0100329 3 1 2 134 2R 19648482 19648500 TATCTGGAACGCAATCGAG 59 19647295 19648386 CATATCGAGTTTGGTTATGGC 59 NA Drosophila melanogaster 50 CG5431 FBgn0034888 FBtr0072080,FBtr0114542 1 2 2 97 2R 19571830 19571901 AAAGAAATGCACCCATTCG 59 19571962 19571980 TCTTGTATCCGGACATTGG 59 NA Drosophila melanogaster 50 CG5428 FBgn0034887 FBtr0114541 2 1 1 279 2R 19569944 19569962 CTTCTTCACCAGCTACGAG 59 19570265 19570283 GAATTCCCGTATGATGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3530 FBgn0028497 FBtr0072028,FBtr0112940,FBtr0072029 1 3 3 84 2R 19279314 19279332 CTTTCGTCATTCCCAAGGA 59 19279181 19279266 AATTTGTTGATGGACACCG 58 NA Drosophila melanogaster 50 yellow-d2 FBgn0034856 FBtr0072012 3 1 1 61 2R 19269579 19269597 GGTGTCTACCACTCTAACG 59 19269620 19269640 GAGAGTGGAAATACATCATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ugt58Fa FBgn0040091 FBtr0071934 2 1 1 89 2R 18530878 18530896 GATAACGTTACCGAAACGG 58 18530751 18530769 AAGATCAGCAAGGTTTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 GM130 FBgn0034697 FBtr0071789,FBtr0071790 3 2 2 131 2R 18013744 18013763 TTAAAGAGGCCAGTCAAGTG 59 18013577 18013595 TCTTCAGCTGGAATTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Grx-1 FBgn0034658 FBtr0071714 2 1 1 68 2R 17645091 17645110 CAAGGTGGTGATCTTTAGCA 59 17645141 17645159 ATCTTTCGGAACTGTTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17922 FBgn0034656 FBtr0071675 1 1 1 97 2R 17581991 17582009 AACATCGGGTTATGTACCT 57 17581856 17581930 CAGATCCAGCTTAAACTGC 58 NA Drosophila melanogaster 50 CG18870 FBgn0042180 FBtr0071688 2 1 1 124 2R 17503365 17503384 TATTGGAACTGCATAACGGT 59 17503193 17503211 CTATCATCGTAGTGCACCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30222 FBgn0050222 FBtr0071655,FBtr0071656 1 2 2 104 2R 17470719 17470737 CTTAGACGCTTTGATGAGC 58 17471237 17471312 ATCGAAGTCAGTGATTCGG 59 NA Drosophila melanogaster 50 Sara FBgn0026369 FBtr0071641,FBtr0071642 1 2 2 80 2R 17372489 17372573 GGTCAAGATTGTTAACATGAGC 59 17372613 17372632 CTGCCCATATGATGTAGTCC 59 NA Drosophila melanogaster 50 CG15661 FBgn0034605 FBtr0110814,FBtr0071624 3 2 2 98 2R 17103547 17103565 GTATTCATTACCCACGGTG 57 17103405 17103485 ATTAAGGTGCTGATCACAG 57 NA Drosophila melanogaster 50 Glycogenin FBgn0034603 FBtr0089601 2 1 2 141 2R 17092794 17092873 GCCTTCAAACAGTTCAGAG 58 17092978 17092996 ACAGCTGAATCAAATCCTG 57 NA Drosophila melanogaster 50 king-tubby FBgn0015721 FBtr0089600,FBtr0089599 2 2 2 122 2R 17009300 17009318 GACCAGATACTCACCAACG 59 17009403 17009519 CTCTATGAGATCAGCCTCCT 59 NA Drosophila melanogaster 50 Treh FBgn0003748 FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536 3 6 6 81 2R 16972827 16972845 TTTAATGCCATGATGGAGG 57 16972889 16972968 GTGCACTGAAGTACTTATCG 58 NA Drosophila melanogaster 50 Treh FBgn0003748 FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536 2 6 6 81 2R 16972825 16972844 ACTTTAATGCCATGATGGAG 57 16972887 16972966 GCACTGAAGTACTTATCGAC 58 NA Drosophila melanogaster 50 CG3216 FBgn0034568 FBtr0071552 1 1 2 80 2R 16876691 16876710 TTACTCCATTCTCGATCTGG 58 16876252 16876648 TTCATCTGCTTGTGAACAC 58 NA Drosophila melanogaster 50 CG34115 FBgn0083951 FBtr0110813 1 1 1 97 2R 16864109 16864127 TTTATTGTGGCCTTTGTGG 58 16864246 16864264 TAGGGATAACGGTACTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 Gr57a FBgn0041240 FBtr0086241 3 1 1 60 2R 16574051 16574070 ATCTATCAAAGATTGGCTGC 58 16574010 16574028 TCAGATTAGCTCCGAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16799 FBgn0034538 FBtr0086249 1 1 1 98 2R 16541191 16541263 CTTCATTTCCAACTGGATCTG 58 16541113 16541131 AAGAGGCCATAGTTCTTGC 59 NA Drosophila melanogaster 50 CG8929 FBgn0034504 FBtr0086283,FBtr0086285,FBtr0086284 3 3 3 81 2R 16217662 16217743 ACCTGAAGGACTATATCAAGTG 59 16217783 16217803 CAGTACTCATAGTAGCGTTCC 59 NA Drosophila melanogaster 50 CG11055 FBgn0034491 FBtr0086271,FBtr0086270,FBtr0086272 2 3 3 142 2R 16148061 16148141 ACTTACACTTAACATGGACC 57 16148245 16148324 CTTCGTTGGATAACATTGTG 57 NA Drosophila melanogaster 50 Obp56g FBgn0034474 FBtr0086343,FBtr0086342 2 2 2 84 2R 15671154 15671174 CGAACTTTAAGGATGTCATCG 59 15671090 15671108 ATCTTGAAGGCAGTGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494 2 7 7 151 2R 15418201 15419688 TATTGAGGGTAAAGGCACC 58 15418068 15418088 CTCAATTGTAGATGTCCACCT 59 NA Drosophila melanogaster 50 CG15086 FBgn0034374 FBtr0086651,FBtr0086649,FBtr0086650,FBtr0086648 3 4 4 60 2R 14567640 14567659 CAGGATCCTTACTACCAACG 59 14567543 14567563 ATGATCCGTAGTTCTGATACC 58 NA DesignNoJunction Drosophila melanogaster 50 IM23 FBgn0034328 FBtr0086729 2 1 1 60 2R 14270365 14270383 TATCCGGATGGTTACAGTG 58 14270323 14270342 CGCAATCCTTATTGTGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5726 FBgn0034313 FBtr0086772 1 1 1 83 2R 14065119 14065140 CCTTTGAAGTCACATCAATCAC 59 14064542 14064560 CATGGATGGATACTGGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 lolal FBgn0022238 FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778 3 4 4 123 2R 14042986 14043404 TCACAGATGTAACACTCGC 59 14042819 14042838 ATAATGATCGGATGCTTCGA 59 NA Drosophila melanogaster 50 CG4996 FBgn0034271 FBtr0086864 3 1 1 90 2R 13627850 13627928 GTACGAACTCAAGAAAGTTCTC 59 13627979 13627997 AAGAACCTTCTGCTGAGTG 59 NA Drosophila melanogaster 50 CG14479 FBgn0034228 FBtr0086952 3 1 1 68 2R 13390037 13390055 GTTCCAGTTTCCTCTTCCA 59 13389987 13390005 ATCAGTGTCTGTTTAGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4750 FBgn0034134 FBtr0087092,FBtr0113086 1 2 2 60 2R 12424201 12424219 CTACCTACTCAAGGACTCG 58 12424240 12424261 GTACATGAACTGGATAACAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ave FBgn0050476 FBtr0087439 2 1 1 68 2R 10640163 10640181 GTACCTGTGGACAGTTAGC 59 10640212 10640231 TCATACTGGGTGTATTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SelD FBgn0020615 FBtr0087564,FBtr0087565 3 2 2 60 2R 10157196 10157216 GTACCAAGATGACAGAGAAGG 59 10157156 10157175 TTAAAGCCTCGCATTATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cp1 FBgn0013770 FBtr0087592,FBtr0087591,FBtr0087593 3 3 3 299 2R 9854396 9854414 ATAAGTACGCCGATTTGCT 59 9854737 9854755 AATCGACCAGATTCTGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 cnn FBgn0013765 FBtr0100656,FBtr0087704 1 2 5 82 2R 9334646 9334665 TCTCTGAATTCCAACAACTC 57 9332634 9333061 AAACTGGCATATGAGTTCTC 57 NA Drosophila melanogaster 50 CG17041 FBgn0033822 FBtr0087749,FBtr0113080,FBtr0087750 1 3 4 157 2R 9150200 9150218 TACTCGAGATCAACGAGGA 59 9150450 9150468 CACAATCGACTTCTCCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Aats-val FBgn0027079 FBtr0087734,FBtr0087735 2 2 2 81 2R 9089460 9089478 ATCACGGAGGAACTTTACC 58 9089523 9089605 ATGTATTGCTGGGATAGCT 58 NA Drosophila melanogaster 50 CG3884 FBgn0033786 FBtr0087800 2 1 2 60 2R 8837253 8837273 ATGAGGGTCATCTGATTATCG 59 8837213 8837231 AAAGCGATGAACAAAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nemy FBgn0033765 FBtr0087878,FBtr0087875 3 2 6 89 2R 8561427 8563641 TAATGCCAAGCTCAGTCAG 59 8560797 8560816 ATGTCGAATAGCACATCCTC 59 NA Drosophila melanogaster 50 Iswi FBgn0011604 FBtr0087842,FBtr0087841,FBtr0087843 2 3 3 93 2R 8527411 8527429 TAGAGGATCGCTTTCTGGT 59 8527486 8527565 GGAGAAGCTCTTATAGCCG 59 NA Drosophila melanogaster 50 CG30054 FBgn0050054 FBtr0114522 1 1 1 162 2R 8511986 8512076 CTATGTACTTAGCATGGTGGA 59 8512261 8512279 CTTTGATTCCTCCAGTCGA 58 NA Drosophila melanogaster 50 Sin3A FBgn0022764 FBtr0087887,FBtr0087889,FBtr0087890,FBtr0087888 3 4 4 92 2R 8467292 8467310 CAACATGGACTCGAATACG 58 8467116 8467237 TTGGAGACAACCTTATCCAG 59 NA Drosophila melanogaster 50 achi FBgn0033749 FBtr0087943 2 1 2 140 2R 8400285 8400879 CAGTGTCATCTACAGGTCC 59 8400104 8400125 ACTTCCTCAGTACCAAATACAG 59 NA Nonspecific Drosophila melanogaster 50 CG13154 FBgn0033736 FBtr0087953 1 1 1 60 2R 8314906 8314924 ACCTCTATACGACTTCGTG 58 8314864 8314882 AATCTTCTCCAGCATTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8841 FBgn0033713 FBtr0087964,FBtr0087965 1 2 3 84 2R 8212163 8212181 ATACTGTTGCTCCTATCGG 58 8212027 8212045 CAGGTATATCCATGGGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30034 FBgn0050034 FBtr0088097 1 1 1 195 2R 7405813 7405831 GCTGAAAGCTCAATAAGGA 57 7404232 7404250 TAATGATCTTGGTCAGGCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG30031 FBgn0050031 FBtr0088123 1 1 1 62 2R 7238631 7238649 CTCCTTCAAGAACCACGAG 59 7238675 7238693 TTGATGATGGCAATGTCGT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp46a FBgn0033508 FBtr0088359 2 1 1 63 2R 6199173 6199192 CATACGAGACGGATGAAGAG 59 6199078 6199096 CTGTTGAAACTGCACTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12923 FBgn0033461 FBtr0088379 2 1 1 60 2R 5775760 5775778 CTGATAATCAGGTGTTGGG 57 5775801 5775820 CGCTGGGATATCAATAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34033 FBgn0054033 FBtr0100088 3 1 1 61 2R 5708244 5708262 CTTCTTGGTTTAGTGCCCT 59 5708287 5708305 GTTTAGATCAGCCAAGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8262 FBgn0027513 FBtr0088685 3 1 1 61 2R 4786772 4786791 GATTACATAGCAGAGGAGGA 57 4786730 4786748 AACTGAGGAATCACTCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8586 FBgn0033320 FBtr0088725 1 1 1 128 2R 4582345 4582363 AATCAGCCTGATCAATCCG 59 4582169 4582187 TACTTAAAGTTCGCCTGCT 58 NA DesignNoJunction Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 2 9 9 94 2R 4568146 4568164 AGATCAAGACCTGCTTGTG 59 4568222 4568303 GGTCATATCACGGTAGTCC 58 NA Drosophila melanogaster 50 CG14755 FBgn0033282 FBtr0088738 3 1 1 81 2R 4235817 4235835 GCTGAATCTGTGCATTACC 58 4235880 4235898 TTAGCCATGAGCTGATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1399 FBgn0033212 FBtr0088940,FBtr0088939 1 2 2 121 2R 3565903 3566088 TCTAAACAGAATGGAACTCCC 59 3565802 3565822 AGCTGACTGATACACTATTGG 59 NA Drosophila melanogaster 50 CG30492 FBgn0050492 FBtr0088917,FBtr0088913,FBtr0113382,FBtr0088916,FBtr0088914,FBtr0088915 3 6 6 95 2R 3526397 3527215 CGGTGCTAAATAAGATTGTGG 59 3527271 3527290 TGAAATTCTCGTCAATGTGG 58 NA Drosophila melanogaster 50 so FBgn0003460 FBtr0088970 3 1 1 94 2R 3312435 3312454 ACAATACAAGGAGCTGTACC 59 3312511 3312666 CATAATGCGCTTTCAACCA 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111102,FBtr0111095 1 2 60 97 2R 3236476 3243204 GTGCCCTTCTATAGATGGT 58 3236397 3236415 ATGAGAGTACCAGAGACCT 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111067 1 1 60 153 2R 3249225 3249243 AAGGACGATTGGTCATCAC 59 3236472 3240414 TTGTACCATCTGCTAATGGG 59 NA Drosophila melanogaster 50 Spn43Ab FBgn0024293 FBtr0100356,FBtr0089054 3 2 2 88 2R 3039482 3039502 CATTTCATTAACGCAGTGGAG 59 3039348 3039434 CCTTTAAGCAATCCAGTTTCC 59 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086204,FBtr0086203 2 2 11 99 2R 2764760 2764778 CAAGGCCTTCATTGAAGTC 58 2763577 2763595 AATGAAGTGTTTGCGACTG 58 NA DesignNoJunction Drosophila melanogaster 50 Ogt FBgn0040295 FBtr0086085,FBtr0086084,FBtr0086086 3 3 3 80 2R 1208104 1213313 GCACGAATATTTGATAGAGCTG 59 1213354 1213372 ATTGCCATGAACTACAGCA 59 NA Drosophila melanogaster 50 CG17478 FBgn0032998 FBtr0111270 2 1 1 114 2R 509136 509154 AATTTCAACGGAGAAGGTG 57 509040 509061 CGTTGATATCGCATTACAACTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 RpL5 FBgn0064225 FBtr0111129,FBtr0111128,FBtr0111131,FBtr0111130,FBtr0111132 2 5 5 100 2L 22428912 22428930 GTACAGATCGCCTATGCTC 59 22428770 22428849 TAGTTGGTCAATCCAACCTG 59 NA Drosophila melanogaster 50 CG31601 FBgn0051601 FBtr0085947 1 1 1 60 2L 22041404 22041422 AATTTGCGATCTACTCAGG 57 22041362 22041381 GATCTCGTTTCTCTAAGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9266 FBgn0032909 FBtr0081434 1 1 1 76 2L 20966705 20966723 TAGCAAATACCCAAGTGGC 59 20966647 20966665 TAGGATTAGGTGGGTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081442,FBtr0081441,FBtr0081444,FBtr0081447 1 4 8 100 2L 20876928 20876946 TCCAAATGATGTCCCACAC 59 20874424 20875092 CGTGAACAGAAATTGTCTATCC 59 NA Drosophila melanogaster 50 spi FBgn0005672 FBtr0081271,FBtr0081269,FBtr0081268,FBtr0081270,FBtr0100597,FBtr0081272,FBtr0081267 2 7 7 63 2L 19568717 19568735 CCTGGTACTGTTTGAACGA 59 19568672 19568690 CTGTAAACCGGTAGATCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS26 FBgn0004413 FBtr0081090,FBtr0081089,FBtr0081091 1 3 3 294 2L 18442938 18442956 TCAAGAAGTTCGTCATCCG 59 18442662 18442680 TATGGAGATGTCAGGTGGT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG3975 FBgn0027559 FBtr0080713 1 1 1 60 2L 15255578 15255596 CAAAGGATGTCAAAGCCAC 59 15255536 15255554 TTAAAGAAGTTGTCCACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 osp FBgn0003016 FBtr0089865,FBtr0089866,FBtr0114465 2 3 3 107 2L 14605240 14610697 GATCACAAATCGGGTTTCC 58 14605151 14605170 TGACTCAGATTCGTTATGGT 58 NA Drosophila melanogaster 50 DnaJ-H FBgn0032474 FBtr0080494,FBtr0080493 2 2 2 82 2L 13164329 13164348 TTTACCTTCATGGGTCTCAG 59 13164154 13164172 TTCTTGTCGTCCCTTATGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15483 FBgn0032457 FBtr0080402 1 1 1 60 2L 12761583 12761601 CGATATTCCGTGCTATTCG 58 12761541 12761560 ATCCAGATACGTATAGTCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17211 FBgn0032414 FBtr0080336 3 1 1 109 2L 12125890 12125969 ACTGCTATTGCATAGGTGG 59 12126041 12126060 GTATCTTACGGGACAACAGG 59 NA Drosophila melanogaster 50 crol FBgn0020309 FBtr0080260,FBtr0080263,FBtr0080261 3 3 4 152 2L 11797737 11797843 TGAAACCGATCATAATTCCC 57 11797604 11797622 CCGCATTATGTGAGATGAG 58 NA Drosophila melanogaster 50 CG12602 FBgn0032373 FBtr0080255 3 1 1 141 2L 11743878 11743898 AAGTACGACAGCTATATTGGC 59 11744001 11744081 TCATGAACTCAACCCAGTG 59 NA Drosophila melanogaster 50 Samuel FBgn0032330 FBtr0080161 1 1 1 80 2L 11014645 11029006 GAATACGTTCAGTCGTTTCG 59 11014584 11014602 CGAGTTAACCAGGTGATCC 59 NA Drosophila melanogaster 50 Porin2 FBgn0069354 FBtr0080184 3 1 1 221 2L 10846406 10846424 ATACTCAACTGTTCGCTGG 59 10846140 10846158 CTTGGTTACCTCGATACCG 59 NA DesignNoJunction Drosophila melanogaster 50 Lip1 FBgn0023496 FBtr0080124 1 1 1 141 2L 10700216 10700303 ACTTTAATAGCCTGGTAGGC 59 10700094 10700112 TTAAACTCGTTCCAGTTGC 58 NA Drosophila melanogaster 50 CG5694 FBgn0032197 FBtr0079954,FBtr0079953 1 2 2 80 2L 10229119 10229196 GAAGCTATACTCGAACACGA 59 10229058 10229076 TTTGTTATCTGGCTCAGGG 59 NA Drosophila melanogaster 50 CG31874 FBgn0051874 FBtr0079964 2 1 1 60 2L 10190451 10190469 GTGAACTCAACACGATTGC 59 10190409 10190430 CCAAGGAATCGTATATCATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13124 FBgn0032156 FBtr0079902,FBtr0079903 2 2 2 89 2L 9903932 9904013 ACTTTCAGAGATTGAGTGCT 58 9903862 9903881 ATGAGTAACTCCAGTTGCTG 59 NA Drosophila melanogaster 50 Taf11 FBgn0011291 FBtr0079924 3 1 1 69 2L 9763152 9763170 ACGAAATCCTCTTTCCCAC 59 9763101 9763119 AATTTCAGGTCGACATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trx-2 FBgn0040070 FBtr0079839 2 1 2 102 2L 9613530 9615310 TGAAAGATAAGGCCGATCTC 59 9615375 9615393 GAGATCATCTTGCAGGGTC 59 NA Drosophila melanogaster 50 jp FBgn0032129 FBtr0113030,FBtr0079861,FBtr0079860 1 3 3 85 2L 9549654 9550211 AGGTTAAGGACTGGTTTGTG 59 9549588 9549608 CATGTAGACAAATAGAAGCGC 59 NA Drosophila melanogaster 50 CG31886 FBgn0032079 FBtr0113029,FBtr0079787 1 2 2 60 2L 8954834 8954854 CGGAACACATATTGAATCACC 59 8954794 8954813 CTATTGTGATGATGTGCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 raw FBgn0003209 FBtr0079746,FBtr0079745 2 2 2 82 2L 8712592 8712682 TACAATCCTCAAGTATCCGA 57 8712529 8712547 AAGAATAATACACGGGCCT 58 NA Drosophila melanogaster 50 CG9296 FBgn0032059 FBtr0079750 3 1 1 60 2L 8685727 8685746 TATATGATTCTGCGGGATGC 59 8685686 8685704 AGAAGTCCTTGTTCTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14275 FBgn0032022 FBtr0079602,FBtr0079603 1 2 2 78 2L 8329717 8329735 CCTACGTCTATGCCATGTG 59 8332320 8332338 GAATTACACTGATGGCACC 58 NA DesignNoJunction Drosophila melanogaster 50 Btk29A FBgn0003502 FBtr0079616,FBtr0079618,FBtr0112836,FBtr0079615,FBtr0079617,FBtr0112835 3 6 6 117 2L 8262033 8262051 ATGACTCACAAGAGCACTG 59 8261860 8261953 ACATACCATTCATAGCGCTC 59 NA Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567 1 8 9 163 2L 8089727 8105702 CAATCACTTGATAAGCTGGTG 59 8106857 8106875 GAAGGTACATCCGTCACAG 59 NA Drosophila melanogaster 50 CG7231 FBgn0031968 FBtr0079529,FBtr0079530 2 2 3 129 2L 7986072 7986144 GAACGTAAGTTTGCCTACC 58 7986237 7986255 CTGTTTGTAGCGCATACAG 58 NA Drosophila melanogaster 50 Wnt6 FBgn0031902 FBtr0079434 3 1 1 252 2L 7343047 7351187 AATCTTAATGCGCGATTCC 58 7351403 7351421 CTGACTGGGATGTTGATCC 59 NA DesignRelaxed Drosophila melanogaster 50 wg FBgn0004009 FBtr0079433,FBtr0079432 1 2 2 97 2L 7313109 7313127 GAATCTGCACAACAACGAG 59 7314366 7314384 TCTTCACTGTACACGATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31906 FBgn0051906 FBtr0079412 2 1 1 63 2L 7225670 7225688 CAGATCAACAAGGATGGCA 59 7225625 7225643 GGACTTTAAGGGTGACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11266 FBgn0031883 FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638 2 7 7 117 2L 7036714 7036822 TTTATCACGTACCACAATGC 58 7036902 7036920 TATTCATGTCCAGTCGCTC 59 NA Drosophila melanogaster 50 CG9542 FBgn0031821 FBtr0079265 2 1 1 62 2L 6488483 6488502 ATCATACGACCAGGTTTCAG 59 6488440 6488458 GAACAAAGTGCTCTAGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vm26Ab FBgn0003980 FBtr0079171 1 1 1 138 2L 5957439 5957457 AGAACTACCTGTTCAGCTG 58 5957559 5957577 GATCCTTAAAGTTCGCGGA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG31915 FBgn0051915 FBtr0079099 3 1 1 60 2L 5529228 5529249 GAGCATTATGGTCAATGAACTC 59 5529269 5529288 CAAATGCTTGTAGTAGTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8892 FBgn0031664 FBtr0079045,FBtr0079046 1 2 2 60 2L 4980310 4980329 TATTCTTCCCGATTTGAGGC 59 4980269 4980289 TGCATCCTCCTGAATAAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cf2 FBgn0000286 FBtr0089649 1 1 3 77 2L 4880294 4880312 CATTTAACGACTCACACGG 58 4879138 4879156 CAGATAGTCCTTCACGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15628 FBgn0031632 FBtr0077384 3 1 1 72 2L 4825676 4825696 GTAACTTTAGAGCGCTATCTG 58 4826465 4826483 TACGATCATTCAGGTACGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG15440 FBgn0031607 FBtr0077454 2 1 1 60 2L 4454129 4454148 TTCGTCAACTTCATATCCGA 58 4454088 4454106 GCTTACCGTTTAGCTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bowl FBgn0004893 FBtr0077492,FBtr0077490,FBtr0077491,FBtr0077493 3 4 4 122 2L 3780466 3780484 CACCAAGTCGTACAATCTG 58 3780569 3781912 TGAATATACCTGTGATCCCT 57 NA Drosophila melanogaster 50 Rrp1 FBgn0004584 FBtr0077678 2 1 1 140 2L 2971050 2971130 GGAAAGTAAACCAGCTCGA 59 2970847 2970868 GCGTCTTTATCCAATGTTACAG 59 NA Drosophila melanogaster 50 Rbp9 FBgn0010263 FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635 3 7 7 84 2L 2963121 2963234 CAATCTGTTAAGGTGATTCGTG 59 2963279 2963297 CAGCCTCTTCGTAATTCGT 59 NA Drosophila melanogaster 50 CG8813 FBgn0031476 FBtr0077628 2 1 1 60 2L 2870159 2870179 CACCTATCAGATCGATTACTG 57 2870199 2870219 TAGGCTCTCATAAATACCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14346 FBgn0031337 FBtr0077926,FBtr0077927 3 2 2 192 2L 1368285 1368303 AAACCCTGAGCACTTACAC 59 1368597 1368615 GTTAGCTCGATCACAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 lectin-21Cb FBgn0040106 FBtr0078046 2 1 1 60 2L 620647 620665 TGTACTTAATCCGCAAGCA 59 620605 620624 ACCAGATTGCTAATGTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11912 FBgn0031248 FBtr0078099 3 1 1 62 2L 318906 318924 GTGATCCACGAGAACTACG 59 318862 318880 CTTGAGGAGAATTAGGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hop FBgn0024352 FBtr0078131 1 1 1 80 2L 296742 296760 AGATCTTAAAGGATCCGGC 58 296804 296987 TCTGCAAGTGTTCTTTGAC 58 NA Drosophila melanogaster 50 spen FBgn0016977 FBtr0078123,FBtr0078121 1 2 3 80 2L 199736 200132 CCAGTCTGAATGATTCTACGT 59 200173 200192 CACCTCGCATTAAATGATGC 59 NA Drosophila melanogaster 50 CG3164 FBgn0025683 FBtr0078153,FBtr0078155,FBtr0100379,FBtr0078154 2 4 4 80 2L 123790 123871 ATTACGATCCTATCATTCCCG 59 123730 123749 GTAGGACTTTAGCGAGTACC 59 NA Drosophila melanogaster 50 CG15322 FBgn0031088 FBtr0070005 3 1 1 109 X 20031044 20031505 TCCACTTTATGCGTATCCG 59 20031578 20031596 TGTATTTGTGTTGCTGCTG 58 NA Nonspecific Drosophila melanogaster 50 CG10597 FBgn0030832 FBtr0074398 1 1 1 83 X 17125080 17125234 ATGCATCACAAACCATTGG 58 17125015 17125036 CGATTTCTTACCTTCATTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13004 FBgn0030797 FBtr0112996,FBtr0074351 1 2 2 105 X 16721788 16721806 TCATCTGCGGTTATGTCAC 59 16721631 16721719 GAGTTGATATGTGGCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15865 FBgn0015336 FBtr0074375 1 1 1 60 X 16557725 16557872 CATCTTCGAAGAGTCCACC 59 16557683 16557702 TTCTCAAAGACCACATAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12507 FBgn0030729 FBtr0074248 1 1 1 60 X 16159850 16160069 CTACGACAGATATGATGAGC 57 16159809 16159829 GTACATGTCCTCAAAGTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rab3-GEF FBgn0030613 FBtr0112983,FBtr0073993 3 2 2 82 X 14996233 14996251 AAATGCAATTCTGGGAGGA 59 14996296 14996373 TTCAATAGGACCCTGATCCA 59 NA Drosophila melanogaster 50 Lsd-2 FBgn0030608 FBtr0110969 3 1 3 300 X 14968250 14968268 TAAGCTTGAGGTAAAGGCG 59 14966999 14967989 AACATTATCTTCCTCGACATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10993 FBgn0030524 FBtr0073837 2 1 1 108 X 13684884 13684902 ATATCCAACCTACCCAAGC 58 13684735 13684812 GCTTTCTTGACAGCTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL49 FBgn0030433 FBtr0073691 3 1 1 112 X 12801658 12801676 TCCAAGGAGACATTTGGAC 59 12801752 12801770 GAAGTGTATCTGACCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2658 FBgn0024992 FBtr0070503,FBtr0070502 2 2 2 133 X 2590887 2590966 CTCAGCATGGATTCATTTAACC 59 2590775 2590794 ACAAATTCCTTCACCTCCTG 59 NA Drosophila melanogaster 50 CG17776 FBgn0040899 FBtr0070390 3 1 1 124 X 2079001 2079020 CAGAAGAAGCCGATTAACAC 58 2079107 2079125 GTGCAGTAGTGGTAGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32816 FBgn0052816 FBtr0070101,FBtr0070102 3 2 2 72 X 211945 227599 TGACGAATTTCCGGAAGAG 59 211891 211910 CTTTAGTACAGTGATTGGCG 58 NA DesignNoJunction Drosophila melanogaster 50 pncr017:3R FBgn0046756 FBtr0091956 1 1 1 61 3R 27594813 27594831 AGTCGAGAGGTCTTAACCA 59 27594853 27594874 CTTCTCTGATATCTTCATTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gcn2 FBgn0019990 FBtr0085787 2 1 1 133 3R 27223216 27223234 TCTAGAACTTCTGAGCGGA 59 27223331 27223402 GGTCCGAGTTACACTTGTC 59 NA Drosophila melanogaster 50 CG15534 FBgn0039769 FBtr0085644 3 1 1 76 3R 26258989 26259007 ATGTCTTGGAAACCACGAG 59 26259680 26259698 AGTCAACTCTAAGGGAGCT 59 NA DesignNoJunction Drosophila melanogaster 50 Cpr97Eb FBgn0039481 FBtr0085135 1 1 1 139 3R 22916316 22916707 AAATTGACCTTGAGCTTGG 58 22916195 22916214 TCGTATCCATATGTGTAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14354 FBgn0039376 FBtr0084905 3 1 1 244 3R 21641475 21641493 TCGAATATTGCCCAGAAGG 59 21641701 21641774 TTTGTCTGTGAACCAACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kal-1 FBgn0039155 FBtr0084549 2 1 1 103 3R 19972454 19972535 AAGGAGAAGGTCTATGAACTG 58 19972928 19972946 TTCAGTTTGCTGAACTCCA 59 NA Drosophila melanogaster 50 CG31245 FBgn0051245 FBtr0083773 2 1 1 60 3R 15202569 15202589 CCTATAACCAAAGATTGCAGG 58 15202463 15202547 TTCTCAACAATGGGTTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7685 FBgn0038619 FBtr0083630 1 1 1 127 3R 14231130 14231211 TCCCATCAAGATTGTCAGG 58 14231302 14231320 AGTAGTTGTCGTTCAGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18622 FBgn0038460 FBtr0083377 3 1 1 202 3R 12810319 12813251 GGGTTTCGAATTGAACTAACTC 59 12809663 12809681 ATCCTCTTTGTCATCCAGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Gyc88E FBgn0038295 FBtr0083028,FBtr0083027,FBtr0110961 1 3 3 80 3R 11013404 11013425 GTATCAGATGATACCCAAACAG 58 11013465 11013554 CTATCGAACATCTCACAGGT 58 NA Drosophila melanogaster 50 CG31495 FBgn0051495 FBtr0082882 2 1 1 60 3R 9664553 9664571 ATTGCTGAAGAAATTGGGC 58 9664511 9664530 TACAAGTGGACTAGAATGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082802,FBtr0082803,FBtr0082807,FBtr0082801,FBtr0100261,FBtr0082805,FBtr0082804 2 7 8 140 3R 9487451 9487469 TTATCATGGTGGGATCTCG 58 9487573 9487892 CTTCGAATTCCACAAAGCC 59 NA InUTR Drosophila melanogaster 50 CG7488 FBgn0038106 FBtr0082695 3 1 1 153 3R 8822346 8822421 AATGTTGTCTACACATCCG 57 8822537 8822556 ATATAGTAAGGGACACTGCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6790 FBgn0037915 FBtr0082460 2 1 1 187 3R 7403616 7403697 CTTACTTATTTCGGCTCCCA 59 7403448 7403466 ATGAGGGCTGACATAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL3 FBgn0020910 FBtr0082347,FBtr0082346 3 2 5 127 3R 7047973 7047991 GTAAGGTTAAGGCCTTCCC 59 7048082 7048293 CTTGTTGATCTTGGAGCCA 59 NA Drosophila melanogaster 50 TfIIFbeta FBgn0010421 FBtr0082310 1 1 1 131 3R 6592802 6592885 CATTGAATATCGGGAGCGA 59 6592689 6592707 GTGATCTTGACCAGATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10435 FBgn0037539 FBtr0081820 3 1 1 80 3R 3837075 3837095 CCAACGTATCAGTACTATGGG 59 3836955 3837035 ATCTTCTTATCGTCGATACCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3014 FBgn0037519 FBtr0081773 2 1 1 77 3R 3625707 3626428 CATCTTACGACAGTTGCCT 59 3625648 3625667 CGTTACTCCCTAATGTTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9727 FBgn0037445 FBtr0081730 1 1 1 102 3R 2280093 2280111 TAAGCTCCCGTATCAAGAG 58 2279954 2280027 TTCAAAGGTCCAATGTCTG 57 NA DesignNoJunction Drosophila melanogaster 50 Mms19 FBgn0037301 FBtr0078778 3 1 1 130 3R 1060945 1061030 CGATGTTGTTGGTGATCTC 58 1061121 1061142 GCTTGTAGAGGAATTTAACGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9809 FBgn0037248 FBtr0078946,FBtr0078945,FBtr0078947 3 3 3 102 3R 251619 251639 GATGAATTACGCTATGTGGAC 58 251471 251555 GTTGTTCCGGCTTATTCTC 58 NA Drosophila melanogaster 50 CG7634 FBgn0037101 FBtr0078371 1 1 1 122 3L 21560465 21560548 GAAAGTCTATTGAAGAGGCA 57 21560633 21560651 GATCTAGAGCTTCACTGGT 58 NA Drosophila melanogaster 50 CG5078 FBgn0037005 FBtr0078208 2 1 1 60 3L 20499623 20499644 GGGTAATCTCATAATGGATCGT 59 20499663 20499683 GACCAAAGTTGCTACTAACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 star1 FBgn0036790 FBtr0089578 3 1 1 102 3L 18567741 18567759 ATAAGGAAACTGCGATCGG 59 18567824 18567907 CACTTATCACCGTCAGTACC 59 NA Drosophila melanogaster 50 CG33985 FBgn0053985 FBtr0100030 1 1 1 62 3L 15519213 15519293 GGCCATGACTTATAATCCC 57 15519169 15519187 GAATGCGGATAAACATCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34400 FBgn0085429 FBtr0112652,FBtr0112651 1 2 2 104 3L 13884423 13884441 AGTAGCTACCACTACAGCA 59 13884042 13884355 ATCCCGATAAATCTGGTGG 58 NA Drosophila melanogaster 50 CG6527 FBgn0036085 FBtr0076291 2 1 1 88 3L 10551829 10551909 CAAGGTGCAATGTACAGTG 59 10551759 10551778 TTATGAGGACATGTGAGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32048 FBgn0052048 FBtr0076376 3 1 2 160 3L 9568818 9574505 TAAGGTACGAGTGCAAAGTG 59 9574684 9574705 TCTATAGATGGGATGATTGAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32022 FBgn0052022 FBtr0076597 3 1 1 173 3L 8713993 8714066 AACTACCTCAAAGTGTCGC 59 8713838 8713857 CTCTGATACTTTACGCTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sif FBgn0085447 FBtr0112712,FBtr0112708,FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713 2 7 8 90 3L 5697096 5697116 GTCACCATATAAAGCAAAGGC 59 5697168 5698077 CTTTACCGATAGGAAGCCG 59 NA Drosophila melanogaster 50 dyl FBgn0066365 FBtr0073343 3 1 3 298 3L 4299067 4299086 TACTCGTATCAACTGACACC 58 4298554 4298572 GACTATGGCCATTAGGCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13931 FBgn0035258 FBtr0072802 2 1 1 229 3L 1701889 1702296 AAACTGTCATCTGGTGGTC 59 1701678 1701696 CCAAGCACTTTGTATACCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5594 FBgn0025698 FBtr0072137,FBtr0072136,FBtr0072139,FBtr0072138 2 4 4 80 2R 19801156 19801174 CACAGTCTACTTGTCCAGC 59 19801216 19801295 ATAGACTGACCGAATTTGTCC 59 NA Drosophila melanogaster 50 CG9897 FBgn0034807 FBtr0071989 1 1 1 80 2R 18873359 18873432 CAATAGGATTAGCAGCGGA 59 18873297 18873315 CTAAGGATCCGCACTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9313 FBgn0034566 FBtr0071521 1 1 1 84 2R 16869956 16869974 AAGAAGATGAACGTCACCG 59 16870022 16870102 TCATGAAGTCATGCGATCC 59 NA Drosophila melanogaster 50 CG34005 FBgn0054005 FBtr0100060 2 1 1 68 2R 13936050 13936124 TGGCTAAGTTACAGTTGGC 59 13936155 13936174 TTAGGATTAAAGCCTGCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Acp53Ea FBgn0015584 FBtr0087080 2 1 1 60 2R 12637670 12637753 ACTGGCTCTCGTATTTGTG 59 12637628 12637648 CAACCAATTCTCCCATATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10265 FBgn0033990 FBtr0087421,FBtr0087422 1 2 2 85 2R 10881076 10881094 TACATAGTAACGCCGATCG 59 10880926 10881027 ATGTGAATCTCCTGTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10102 FBgn0033927 FBtr0087559 3 1 1 299 2R 10249281 10249448 TAGACGAGCACAGTTTGTG 59 10249000 10249018 TGAAGGTATGGACACTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsc70-5 FBgn0001220 FBtr0087568 1 1 1 74 2R 10141098 10141116 TAGTCCACGATACTGAGAC 57 10140982 10141060 TCTTTAGCTTCTCGCACTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG8525 FBgn0033735 FBtr0087927 2 1 1 259 2R 8313650 8313668 GATAAGGTGGCTATTGCAG 57 8313890 8313971 TAAACATTATCCATGGTGCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG34223 FBgn0085252 FBtr0112416 2 1 1 84 2R 7123447 7123525 CACCTCAAAGTTCAGTTCC 58 7123572 7123591 GGTTGAAGACGACTAAAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30005 FBgn0050005 FBtr0088464 3 1 1 84 2R 5495070 5495089 ATCAATCGATTCCAGAAGGT 58 5495133 5495216 CTGCGAGATATCTTATAATCGC 58 NA Drosophila melanogaster 50 CG12929 FBgn0033429 FBtr0088541 1 1 2 147 2R 5473877 5473895 GAGGGCCAGTATTACAGTG 59 5473690 5473708 CATCAGGATACTGCCACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18659 FBgn0027561 FBtr0088626 1 1 2 196 2R 5015060 5015078 ATCTACAGATCTTTGCGCA 59 5013563 5013695 CTCCTTAACCGATTTGACG 58 NA Drosophila melanogaster 50 CG13747 FBgn0033364 FBtr0088660 2 1 1 121 2R 4905717 4905802 GCTACTGATCAATTTGTTGACC 59 4906003 4906024 GATAAATTAGGCAGCTTGAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Tsp42Ej FBgn0033132 FBtr0089030 1 1 1 230 2R 2928037 2929080 ATTCTCATTGTGACGTGCA 59 2929328 2929346 GAAGGTGAAGAGGTAGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 Stlk FBgn0046692 FBtr0111112 2 1 2 92 2R 434474 447872 TTTGTACAAGCAGGTTTCC 58 447928 447946 GAACATAATGCTCGGAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9320 FBgn0032882 FBtr0081409 1 1 1 83 2L 20753101 20753186 TACTTTAAGGAATACGTGGACG 59 20753230 20753248 CAGATTCAGCTCAAACAGC 59 NA Drosophila melanogaster 50 CG13970 FBgn0032851 FBtr0089388 1 1 1 60 2L 20103854 20103873 ACCTAGATGATCTGGATGAG 57 20103813 20103832 AATAGACCCACCAATCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10263 FBgn0032812 FBtr0081265,FBtr0081263 1 2 3 224 2L 19581874 19582022 GTGATGAGCCAAACAATCG 59 19581668 19581686 AAATACATGCTTGCAGGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5783 FBgn0032670 FBtr0081049 1 1 1 87 2L 18156497 18156515 GAATCTGGTGTACAGGGAC 59 18156566 18156640 AAATCCAGATGGAGGTTCG 59 NA Drosophila melanogaster 50 CG17904 FBgn0032597 FBtr0080891 1 1 1 60 2L 16733497 16733518 CTGAGTTTAAGAATGTCACCAC 59 16733539 16733557 CTGGCCATAATCTTTGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3994 FBgn0028516 FBtr0080715,FBtr0080714 3 2 2 132 2L 15236713 15236731 TCATGATCTGGGTCATCAC 58 15230349 15236617 CCCATGATGACATTCACCA 59 NA DesignNoJunction Drosophila melanogaster 50 B4 FBgn0023407 FBtr0080514,FBtr0080513 3 2 2 121 2L 13535017 13546919 CTCTTAAAGGCTGCATGGA 59 13534914 13534932 TCTTTGTTGACTTCGTGGA 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG31851 FBgn0051851 FBtr0080454 2 1 1 60 2L 13258089 13258108 TGAAATATCGCTGGATACCT 58 13258130 13258149 GGTAGTCTCATTTCGTATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 w-cup FBgn0032269 FBtr0080132 1 1 1 134 2L 10576863 10576881 CAAGAAGACAATTCGCGAC 59 10576687 10576771 CTGTGACTAGTAGATGTAGATAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8486 FBgn0031993 FBtr0079583,FBtr0110893,FBtr0079582 3 3 3 81 2L 8188866 8188939 GACATTTATCTGGTACGGGA 58 8188983 8189001 GCGATCGGTATAGGAAGAG 59 NA Drosophila melanogaster 50 CG3165 FBgn0031484 FBtr0077642 1 1 1 66 2L 2977472 2977490 ATTGAATGTGCTCTTCCAG 57 2977520 2977594 GCTCAGACCTGTTATTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10880 FBgn0031398 FBtr0077843 2 1 1 107 2L 2215602 2215620 GAATCAGATCACCGAAGAG 57 2215458 2215531 TTCTTCTTGTGACTCTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mir-303 FBgn0067702 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:D:96A FBgn0011845 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:G3:22BCa FBgn0011859 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG17167 FBgn0039941 FBtr0113729,FBtr0113728 2 2 2 92 XHet 53879 56997 CATCGATAAGCCTCCAGAG 59 57050 57071 GGAAGATTAAGAACAAAGAGGC 59 NA Drosophila melanogaster 50 if FBgn0001250 FBtr0074357,FBtr0074358 1 2 2 82 X 16649915 16649936 CCATCAACATTCAGAAGAACTG 59 16649783 16649872 ATACTTGTCCACAGTGCTG 59 NA Drosophila melanogaster 50 CG9992 FBgn0030744 FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309 2 5 5 170 X 16276792 16276810 GTGGTGCTAAATAGCTCTG 57 16276573 16276660 GATCGAATTGATATCCTCCTG 57 NA Drosophila melanogaster 50 CG9522 FBgn0030587 FBtr0073986 1 1 1 60 X 14741877 14741895 TAGGCGTCATAATCTGCAC 59 14741835 14741853 TGCATCTATCAGAACTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32666 FBgn0052666 FBtr0073507,FBtr0073508 3 2 2 124 X 11445270 11445288 GACCTTCCTCAACATCTCG 59 11445376 11445818 CATTCATGCGATCGTTTGG 59 NA DesignRelaxed Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073484,FBtr0073488 1 2 12 200 X 11277136 11281813 AGAGATCTTGAATCAGCGC 59 11289281 11289301 TCGTATAACCAGCTATCATCG 59 NA Drosophila melanogaster 50 sws FBgn0003656 FBtr0071125 2 1 2 82 X 7854138 7855220 TCACACCAATGGATCTCTG 58 7854074 7854092 CTTTAGGATCGCATAACGG 58 NA Drosophila melanogaster 50 peb FBgn0003053 FBtr0100265,FBtr0070680 2 2 2 179 X 4514858 4514876 GATACGGAGAACTTCACCT 58 4515310 4515328 AACTTGATGCTGTTTGTGG 58 NA DesignNoJunction Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211 1 4 7 180 4 1080191 1080209 CAACACAACCTCTCAACAG 58 1079962 1080047 TGAGAAGAGTCCATTGCAG 59 NA Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211 2 4 7 182 4 1080191 1080209 CAACACAACCTCTCAACAG 58 1079960 1080047 TATGAGAAGAGTCCATTGCAG 59 NA Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 1 8 8 80 4 671649 672942 CTAACAGCACAGATTGATGG 58 671588 671606 CAAATACGGGTGAAAGCTG 59 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 1 14 14 90 3R 27691897 27691915 ATACTGCACCAGATCTTCC 58 27691743 27691843 GATATTGGATGAGGGCCTG 59 NA Drosophila melanogaster 50 Pli FBgn0025574 FBtr0112908,FBtr0084527,FBtr0112907 3 3 3 94 3R 19691346 19691364 GAATCTCCCATACTGGCTG 59 19688922 19691288 AAGTAACCATTGTAGCCGA 58 NA Drosophila melanogaster 50 cnc FBgn0000338 FBtr0084392,FBtr0084393 3 2 7 92 3R 19014845 19017430 GACATGAATGAGAGCTTCTG 58 19014772 19014790 GTTGCTAACATGTCCACTG 58 NA Drosophila melanogaster 50 Atpalpha FBgn0002921 FBtr0089510,FBtr0089513,FBtr0089509,FBtr0089511 3 4 8 136 3R 16792304 16792323 CGATTCTTTGCATCGATCTG 59 16792914 16798904 CGAAATCAACCTTGAGTTCAC 59 NA Drosophila melanogaster 50 CG14301 FBgn0038632 FBtr0083692 2 1 1 89 3R 14456485 14456503 ACCGGACAACTTTCTTAGC 59 14455784 14455802 AGTATGGGATAGTCAACGC 58 NA DesignNoJunction Drosophila melanogaster 50 htl FBgn0010389 FBtr0083548,FBtr0083550,FBtr0083549 3 3 3 60 3R 13873052 13873072 GTAAGCGATCGAGTTAATCAC 58 13873012 13873030 CCAGTGTGAGATTCAATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9813 FBgn0038143 FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767 2 6 6 120 3R 9199920 9200008 TGGCAAAGGTAATGTTTGC 59 9199818 9199836 AAGTCGATGGGTATGACAC 59 NA Drosophila melanogaster 50 SelR FBgn0037847 FBtr0082296,FBtr0082294,FBtr0082292 3 3 6 166 3R 6692389 6692408 CAACAAACACTACGAGAAGG 58 6689539 6692261 GTATACGTTCTGGTATGCTG 57 NA Drosophila melanogaster 50 Fmr1 FBgn0028734 FBtr0082200,FBtr0082198,FBtr0082199 1 3 5 192 3R 5930726 5930803 GTTTCGAATCAAGATCGCTG 59 5930471 5930489 AAGCTGCTGATCAATCTCC 59 NA Drosophila melanogaster 50 CG8147 FBgn0043791 FBtr0082060,FBtr0100522 3 2 2 60 3R 5321943 5321962 AGAAAGAACGATATCTTCGG 57 5321985 5322003 CATATGGAAGATCATCCGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10277 FBgn0037442 FBtr0113198,FBtr0081722,FBtr0081720,FBtr0081721 2 4 4 89 3R 2211842 2211860 AACAAGTACGACACCTGTG 59 2211913 2212068 CGTGTGATAGGGATGTGAG 59 NA Drosophila melanogaster 50 CG6838 FBgn0037182 FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186 2 4 4 89 3L 22709293 22709406 GTCAGTAAGGATCCAAACC 57 22709222 22709240 ATTAAGCAGATTCACGCTG 58 NA Drosophila melanogaster 50 CG33054 FBgn0053054 FBtr0078317 3 1 2 174 3L 21190888 21190906 CCTACGAATCTGTACAAGC 57 21190610 21190628 TAGACAACAATCTCCAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10724 FBgn0036357 FBtr0075845,FBtr0075846 2 2 2 61 3L 13409017 13409104 TATCATCAAGAATGCCCATCC 59 13409127 13409145 TGTTATTGTCCAGCCAGAC 59 NA DesignRelaxed Drosophila melanogaster 50 ect FBgn0000451 FBtr0076306 2 1 3 300 3L 10188715 10188733 CCAAACTCTGGATGAGGTC 59 10187360 10188005 CTTTGTGATCTGTGCTTCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326 2 11 11 88 3L 9773790 9773876 CTCATGAGATCTTTGTGCA 57 9773928 9773946 CTCATACTTGATCCAACGG 57 NA Drosophila melanogaster 50 CG1146 FBgn0035346 FBtr0072921,FBtr0072922,FBtr0072923 2 3 3 69 3L 2491992 2492010 CTACTCCATCACCGATCTC 58 2492043 2492061 TTCGTTGATGTACGTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sox14 FBgn0005612 FBtr0072158,FBtr0072157 1 2 2 60 2R 19872011 19872029 AGACAACATTGTGAACGAC 58 19872050 19872071 CACATATGGAGGTATTTGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TBPH FBgn0025790 FBtr0089627,FBtr0089626,FBtr0089625,FBtr0089624 2 4 4 144 2R 19748031 19748104 CATTATCAAGGGCGTTTCG 59 19747905 19747924 ATTCATGTGGTTACCCTGTG 59 NA Drosophila melanogaster 50 asrij FBgn0034793 FBtr0071902 3 1 1 293 2R 18774489 18774508 TTCAGTTACCAGCAGAAGTG 59 18774764 18774843 CATTGAACCAGAGTCCAGG 59 NA DesignRelaxed Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0086456,FBtr0086451,FBtr0100392,FBtr0086457,FBtr0086454 2 14 15 96 2R 15359155 15359173 ACAAGTGGATGAACATGGG 59 15359233 15360333 ACTAGAGCTTCTATCCGCT 59 NA Drosophila melanogaster 50 CG12442 FBgn0033770 FBtr0113076,FBtr0087849 2 2 2 65 2R 8587976 8587994 CATCGACGATATGGTCGAG 59 8588023 8588041 CTTTCCACATCCTGTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13213 FBgn0033609 FBtr0088180,FBtr0088178,FBtr0088179 2 3 3 81 2R 7174275 7174293 CCAGAAGCTAAAGGTCCTG 59 7174159 7174232 AGGTGAGTCCATAATTTCCTG 59 NA Drosophila melanogaster 50 Tsp42Ej FBgn0033132 FBtr0089030 1 1 1 81 2R 2929211 2929229 GGTGTCGTACAAGTATTCC 57 2929328 2929346 GAAGGTGAAGAGGTAGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9447 FBgn0033110 FBtr0086206 3 1 1 87 2R 2762345 2762423 ACTAATGGATCGACGACAG 58 2762276 2762296 GAAATCTGAGTTATACGGCTC 58 NA Drosophila melanogaster 50 CG14464 FBgn0033000 FBtr0111283 3 1 2 68 2R 716971 716989 AATATTCGCTCAAACGGTC 58 717073 717092 ATTATACCAGCAACCATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 p120ctn FBgn0015587 FBtr0111113,FBtr0111114 1 2 2 60 2R 487558 487579 CGACTGCTATCTTATGATTCTC 58 494275 494294 AATTACGTAAAGCACCACAG 58 NA DesignNoJunction Drosophila melanogaster 50 rtGEF FBgn0015803 FBtr0112884 2 1 4 102 2L 20356711 20356729 CAATGCCAATAATCCCAGC 59 20356795 20356887 ATGTTGACTCAGATGAGCG 59 NA Drosophila melanogaster 50 CG32970 FBgn0052970 FBtr0114461,FBtr0080622 1 2 2 79 2L 14309126 14309144 CAACACTTTATACCGCTGC 59 14309420 14309438 TTAGGCTGGCTTTCTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 kuz FBgn0015954 FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660 1 5 5 86 2L 13634172 13634250 ACCTACAGAGATTTCACTGG 58 13634298 13634317 GTACTTCTCGCAAATTCCAC 59 NA Drosophila melanogaster 50 CG13138 FBgn0032211 FBtr0080066,FBtr0080067 3 2 2 60 2L 10300363 10300381 CAACGTAGACCTAAGTCCA 58 10300321 10300339 TATGGAGAATGGCATACCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nhe3 FBgn0028703 FBtr0112942,FBtr0079318 3 2 3 98 2L 6680539 6680961 TATCAAGTGCACAGTTCTG 57 6680459 6680477 CAAGTTCGTATCTGTTCCA 57 NA Drosophila melanogaster 50 pgant5 FBgn0031681 FBtr0079026,FBtr0111024 1 2 2 112 2L 5077708 5077787 CTCAACTTCCGATGGTACC 59 5077614 5077633 TTATCGATGGAGAACAGACC 58 NA Drosophila melanogaster 50 CG7337 FBgn0031374 FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012 3 5 5 130 2L 1937464 1937482 CACAATACGGAGAATGGGA 59 1937576 1938518 CTATGGCCTACATTCTCCA 58 NA Drosophila melanogaster 50 CG2807 FBgn0031266 FBtr0078068 1 1 1 60 2L 570338 570357 ATTCTTCCGTTGCTTATGTC 58 570377 570398 CCTTCACTAATAAATGACGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11245 FBgn0030388 FBtr0073646 1 1 1 178 X 12341653 12341671 GATTCATCCAATTCCAGCG 58 12341811 12341964 TCTAACATCTTCTTGGGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gga FBgn0030141 FBtr0071363 3 1 1 131 X 9496702 9496789 CTTGTAGCTGACACTCTGG 59 9496883 9496902 TGAACTAGCTACTGTTGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 Ssl2 FBgn0041780 FBtr0085343 1 1 1 60 3R 24857551 24857569 CAGAGGACTTTGTCTTTGC 58 24857442 24857527 TTCTTTACGCGATCGTACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31550 FBgn0051550 FBtr0078685,FBtr0113409,FBtr0078684 3 3 3 246 3R 1314709 1314728 CTAAAGGAGGACAACATTGG 58 1314990 1315101 GACGTGGATTGTTCAAAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG34258 FBgn0085287 FBtr0112452 1 1 1 180 3L 19944669 19944741 CACTTTATTGCAACTCGGA 58 19944507 19944525 CCTTATCACTTCCATCCGA 58 NA DesignNoJunction Drosophila melanogaster 50 Atg12 FBgn0036255 FBtr0089325 2 1 1 83 3L 12130392 12130485 AATTACATTTGCACCTGCC 58 12130532 12130550 TAGTAGAGCACCAGTTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Alg10 FBgn0052076 FBtr0076217 2 1 1 196 3L 11158853 11158935 AGAGTTGTGGCTTCAACTC 59 11159095 11159113 TGGCGAAGTAGAATAGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3434 FBgn0036000 FBtr0076473 3 1 1 63 3L 9452787 9452805 TTCACCACCTGTACAAGAC 59 9452683 9452761 TAAAGGTTGTGAACCATCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5428 FBgn0034887 FBtr0114541 3 1 1 225 2R 19569939 19569957 AACATCTTCTTCACCAGCT 58 19570146 19570224 GAACGAACCTGAACTCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 sPLA2 FBgn0033170 FBtr0088972,FBtr0100138 2 2 3 69 2R 3330818 3330836 CGAGATTATCGAGTCCCAC 59 3330869 3330954 CTTGAGGATGGGAAACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17510 FBgn0039969 FBtr0086073,FBtr0086074 3 2 2 84 2R 1491808 1491826 AAGGAGTATACGTCTGGCT 59 1491511 1491761 TATATTCCTCTAGGGAGCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG32972 FBgn0028905 FBtr0080599,FBtr0080600 1 2 2 130 2L 14164509 14164587 ATGATGTGACTCTCACCAC 58 14164397 14164415 CTGCAGGATATCTCCAACG 59 NA Drosophila melanogaster 50 Gyc32E FBgn0010197 FBtr0080223,FBtr0112856 2 2 2 81 2L 11143213 11143231 ATACCAACCACAAAGACCC 59 11143084 11143170 CAATGAAGACATAGATGCGAG 58 NA Drosophila melanogaster 50 aru FBgn0029095 FBtr0078033,FBtr0078031,FBtr0078032 3 3 3 93 2L 864329 864407 TGAAACAGGGAACATAATCG 57 864255 864274 GTTGTTGTATAGCTCCATGG 58 NA Drosophila melanogaster 50 snoRNA:MeU2-C28 FBgn0065057 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-G2703b FBgn0082930 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30229 FBgn0050229 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi28S-3436b FBgn0086602 FBtr0091803 3 1 1 119 X 6636490 6636509 AACTAGGTGGTTATCCTCCA 59 6636390 6636408 CAAGGTTCAGGTAGAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-2179 FBgn0086666 FBtr0091922 1 1 1 79 X 658040 658059 GGTTATAGTGAGTTCACTCC 57 657980 657998 TTCCAGAAGTTGTTAACCG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 hydra FBgn0031128 FBtr0077294,FBtr0077295 3 2 2 192 X 20542569 20542708 CCTTAAAGTAGAAGTCGTGG 57 20542396 20542414 GTATCCTCCCAGAGATAGG 57 NA Drosophila melanogaster 50 CG15455 FBgn0031121 FBtr0077314 1 1 1 73 X 20413032 20413050 AAGTTCAATGATCTGCGGT 59 20424611 20424630 GTTGAGATGACAATCGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11943 FBgn0031078 FBtr0074798,FBtr0074799 1 2 2 80 X 19747833 19747915 GGATCTGGTCTATAGCACG 59 19747959 19747977 TTGGAGTTCATGAAGTCGA 58 NA Drosophila melanogaster 50 RpS10b FBgn0031035 FBtr0074731,FBtr0074732 3 2 2 98 X 19492188 19492206 TATTACGATACGTTCGCGT 58 19492495 19492513 AAGAGGTACTCGTAGATCG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Grip84 FBgn0026430 FBtr0074775,FBtr0074777,FBtr0074776 2 3 3 80 X 19457156 19457175 TCTCCAAGTACCAAATGCTC 59 19457033 19457114 TTTCCTTCCAAATCTTGCAC 58 NA Drosophila melanogaster 50 CoRest FBgn0053525 FBtr0091483 2 1 5 147 X 19418059 19418078 TACTACTCGTGGAAGAAGAC 58 19418187 19422683 GCCTATTCTTCTTGTCATCG 58 NA Drosophila melanogaster 50 Pfrx FBgn0027621 FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720 3 8 8 60 X 19402026 19402044 GTTAAACGAGATCGATGCC 58 19402068 19402086 CTTCTCCTTGATTTGCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vav FBgn0040068 FBtr0113316 1 1 3 94 X 19159261 19159279 CTACATCTACAGCGAGGAC 58 19159337 19163303 TATTGTCGGTGGTAACCTC 58 NA Drosophila melanogaster 50 CG6540 FBgn0030943 FBtr0074601 1 1 1 75 X 18543309 18543327 TAACATCATATCGCCGCAG 59 18543366 18543384 GAATATCAGGTCCATGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32547 FBgn0052547 FBtr0114369 1 1 1 113 X 18341147 18341227 TCTTCCTGCTGATGTACTG 58 18341052 18341070 GATGCTCGTACATCATGAC 58 NA Drosophila melanogaster 50 CG15055 FBgn0030919 FBtr0074561 3 1 1 84 X 18318472 18318490 CTATGGCTCCTATAGTGCC 58 18318538 18318556 GTATTTCACAACTGGAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 upd3 FBgn0053542 FBtr0113465 1 1 1 98 X 18174129 18174147 GACTCTGGACATTGTCGAG 59 18174209 18177440 CGAAGGTTCAACTGTTTGC 59 NA Drosophila melanogaster 50 CG7192 FBgn0030894 FBtr0074527,FBtr0074528 3 2 2 84 X 17992532 17992620 GTGAATGATATACCTACACTGC 58 17992469 17992487 ACAAGATCTGACGTTCCAG 59 NA Drosophila melanogaster 50 CG8142 FBgn0030871 FBtr0074472 1 1 1 266 X 17737802 17737820 GATCTGTTCGAGATGTCGG 59 17737492 17737510 GATCTGCAGATACTCGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 par-6 FBgn0026192 FBtr0074456,FBtr0074455 2 2 2 83 X 17598560 17598579 TAACAACGACGATAACTTCG 58 17598624 17598710 TTAAGATCATCCTTTCGCTG 57 NA Drosophila melanogaster 50 f FBgn0000630 FBtr0074424,FBtr0074421,FBtr0074423,FBtr0074420,FBtr0074422 1 5 6 106 X 17173603 17173622 AGAAGATGAAAGTGGAGCAG 59 17173691 17173774 CAAGTAGATCTGGTCCACG 59 NA Drosophila melanogaster 50 CG13011 FBgn0030771 FBtr0074318 2 1 1 182 X 16573629 16573647 ATCCTACAGTCTCATTCGG 58 16573936 16574028 TAGCCCATGTAATAGCAGG 58 NA Drosophila melanogaster 50 Graf FBgn0030685 FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197 1 6 6 80 X 15646356 15646433 AACCAATGTTCGTTACTCC 57 15646294 15646312 TAGTTCTCCGGAATGAGTC 58 NA Drosophila melanogaster 50 cngl FBgn0029090 FBtr0089294,FBtr0089293 1 2 2 81 X 15293119 15293253 GCCTAATGGTATACGACGA 58 15293056 15293074 ATCAGCGCTATCATATCGA 58 NA Drosophila melanogaster 50 CG9123 FBgn0030629 FBtr0074019 3 1 1 90 X 15235941 15235959 TTCAAGCTCATCAAATCGC 58 15235869 15235887 ATCTTGCATAGGAGCTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lsd-2 FBgn0030608 FBtr0110969 2 1 3 102 X 14966835 14966854 GTAGGCATTATCGATAGGGA 58 14966646 14966664 TGTGTAGGACTGGATCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 rut FBgn0003301 FBtr0073992 3 1 1 110 X 14689077 14689095 GAGATGGATGTGCTACAGG 59 14688852 14689004 GTAGAGTTCCATGTTGTTGC 59 NA Drosophila melanogaster 50 Jafrac1 FBgn0040309 FBtr0073763,FBtr0073764 3 2 2 99 X 13225456 13225474 CTGACAAGTCGATGAAGGT 59 13225537 13225555 AAGTTCTGCTTGTCATCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pde9 FBgn0052648 FBtr0073701 2 1 1 80 X 12688608 12700941 GACACCTTCAATAACATTCGC 59 12688548 12688567 CGTGAGGATTTCATTGTGAC 59 NA Drosophila melanogaster 50 Gtp-bp FBgn0010391 FBtr0073480 2 1 1 251 X 11022187 11022205 GTACCAGAACATCAACAGC 58 11021867 11021885 TTCGATATCAGATGGTCGC 59 NA DesignNoJunction Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 2 8 9 95 X 10692568 10692661 CGAATAAGGGTGAAATTTGC 57 10692492 10692510 GCATGATCCGTTTAATGGT 58 NA Drosophila melanogaster 50 CG1791 FBgn0030163 FBtr0112968,FBtr0071429 3 2 2 170 X 9857893 9857911 TACTTGGTGCCTACAAAGG 59 9857681 9857760 ATGTACCAAACAAGTTGCTC 58 NA Drosophila melanogaster 50 ld14 FBgn0030090 FBtr0071349 2 1 1 113 X 9020331 9021112 TTGATTGCACAAACTGCTG 59 9020236 9020254 CTATCATCTCATCCCAGCC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15036 FBgn0040922 FBtr0071060 3 1 1 70 X 7318784 7318802 TGGAGTGTTTAAGCCTTGG 59 7318732 7318750 TATCCGTATACATCCGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34337 FBgn0085366 FBtr0112539 2 1 1 63 X 7311349 7311367 ATTTATGGGTCAGAGCTGC 59 7311393 7311412 CATTTCACCAAATTTGGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100214,FBtr0100208,FBtr0100200,FBtr0100215,FBtr0100217,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100201,FBtr0100206 1 11 15 113 X 6979981 6981658 CCATCCGGAATGGATACAG 59 6979886 6979904 TAAATTGTTGGCACTCCCA 59 NA Nonspecific Drosophila melanogaster 50 l(1)G0255 FBgn0028336 FBtr0070954,FBtr0070953 3 2 2 86 X 6575393 6575476 ATTCGGCTATTGTCTGATGG 59 6575524 6575543 GATCTTGGCAATATTCTCGC 59 NA Drosophila melanogaster 50 CG14443 FBgn0029880 FBtr0070949 3 1 1 60 X 6529736 6529754 TGGTGATCTATGTGAAGCG 59 6529778 6529796 CAATTCCGGATCAAATCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tre1 FBgn0046687 FBtr0070848 3 1 1 89 X 5568182 5568269 CAATCGCAACTACAGAGTG 58 5568111 5568129 TAGTTTCTACTCGGCATCG 58 NA Drosophila melanogaster 50 CG3239 FBgn0029769 FBtr0070793,FBtr0070792 3 2 2 60 X 5389203 5389223 GGAATCCTGGCATATAGATCG 59 5389163 5389181 ATGACTGAGGATCTGTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3568 FBgn0029710 FBtr0070676 3 1 1 217 X 4438006 4438024 GTGGTACACTTCTCATGGT 58 4438204 4438280 CTGATTAGCATATTCGCCCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG32776 FBgn0052776 FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630 1 4 4 85 X 3791669 3795148 GAGTCTCGATGATGACTACG 59 3791603 3791623 CGGGATGATCAATAATCTCCA 59 NA Drosophila melanogaster 50 Rala FBgn0015286 FBtr0070584,FBtr0070583,FBtr0070582 1 3 3 95 X 3603936 3603954 GATAACTACTTTCGCAGCG 58 3602942 3603880 GATTTGTTCTCTGAATTCCTGG 59 NA Drosophila melanogaster 50 CG8310 FBgn0040377 FBtr0070450 3 1 1 219 X 2473970 2474043 GGCAAGATCATTGAGACCA 59 2473769 2473787 CCAACTCATAGGTGTCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG3091 FBgn0029608 FBtr0070416,FBtr0100226 1 2 2 108 X 2147526 2147544 CACATCTGTTCATGGATCG 58 2147384 2147402 ATGAGCTTATTTCCCTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 msta FBgn0053548 FBtr0070421 3 1 2 60 X 2106976 2106994 ACGCCAAGTTACTATGGTC 59 2106934 2106953 AAGTGCTTAGTCATTCCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3835 FBgn0023507 FBtr0070383,FBtr0070382,FBtr0070381 2 3 3 95 X 2038240 2038324 TTCAAGTTCCTGAACTCCC 59 2038383 2038401 GTTGATCTTCTCCTCGTCG 59 NA Nonspecific Drosophila melanogaster 50 CG17766 FBgn0023510 FBtr0070316 3 1 1 60 X 1806805 1806826 CTTCGACTTTCTGATGAAACAC 59 1806846 1806865 ATTAGTACGAAGACCCTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Edem1 FBgn0023511 FBtr0070352,FBtr0070353 2 2 3 88 X 1801464 1801542 AAAGTTGGAACTGAGGGAG 59 1801394 1801412 GCAGTTCATCGTAGTTGGA 59 NA Drosophila melanogaster 50 CG14782 FBgn0025381 FBtr0070259 3 1 1 101 X 1373462 1373480 ACGGAAACATAGTGATTGG 57 1373545 1373563 TTCTGTACGTCTGGTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab27 FBgn0025382 FBtr0070294 3 1 2 80 X 1368834 1368852 CATCGACTACGATTACCTG 57 1368772 1368790 GTGTACTGGTAGAGGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 png FBgn0000826 FBtr0070234 1 1 1 60 X 1250748 1250766 CCTACCAGACATCTTCCAC 59 1250706 1250725 GAAGTAATGCTTGTAGAGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12773 FBgn0024365 FBtr0070235 3 1 1 176 X 1246461 1246479 AACCTATGGCCAAAGTACG 59 1246246 1246321 CAAGTACAGGAACGTGGAG 59 NA Nonspecific Drosophila melanogaster 50 CR41612 FBgn0085821 FBtr0114279 1 1 1 155 U 7404861 7404879 AATGTTGCTGATTCTGCTG 58 7404998 7405016 ACCAGTTGAGTGTGAACAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40639 FBgn0085758 FBtr0114208 1 1 1 60 U 9455996 9456015 TGAAGATTGAGATAGTCGGG 58 9456038 9456056 CAGAACGAGCACATAAACC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41588 FBgn0085712 FBtr0114161 1 1 1 60 U 7505851 7505869 GTCAACAGAGTACAACAGG 57 7505893 7505911 ATGGCGTCGTATTAATGCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40624 FBgn0085502 FBtr0113914 2 1 1 99 U 6539844 6539862 CTTAGCCGTCTGATTTGGA 59 6539925 6539943 CTTCCTTCAAATGGTCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41555 FBgn0085686 FBtr0114135 2 1 1 96 U 4873346 4877303 GAAAGAAACCGCTGATACG 58 4877362 4877381 TCTCGTCTCCATAATAACGG 58 NA Drosophila melanogaster 50 plexA FBgn0025741 FBtr0100296 2 1 5 162 4 1043003 1043021 AGAAGGGAATACACCAACG 59 1036238 1042878 TTCTCCACTCGTTAGAACAC 59 NA Drosophila melanogaster 50 CG11148 FBgn0039936 FBtr0089250,FBtr0089249 2 2 3 185 4 886491 886567 TTGGCAATAACTCTCGTCC 59 886265 886342 CGGCCTTTGATATAACCGA 59 NA Drosophila melanogaster 50 CG11337 FBgn0039846 FBtr0085812,FBtr0085811 3 2 3 81 3R 27230181 27230199 AAGGAGAGGAATCCAAAGC 59 27230062 27230136 GAAGGTCATGTTACGTCCA 59 NA Drosophila melanogaster 50 Gcn2 FBgn0019990 FBtr0085787 1 1 1 132 3R 27223217 27223235 CTAGAACTTCTGAGCGGAG 59 27223331 27223402 GGTCCGAGTTACACTTGTC 59 NA Drosophila melanogaster 50 CG1544 FBgn0039827 FBtr0085755,FBtr0113311,FBtr0085756 2 3 3 87 3R 27027534 27027614 GAAGACTTTAACATCCATCCC 58 27027663 27027681 ACCAATCGATCTTGACTCC 59 NA Drosophila melanogaster 50 dco FBgn0002413 FBtr0085743 1 1 3 144 3R 26886813 26886831 AATTGAAACGAAAGCGCAG 59 26884335 26886100 TGTATTCGAAGGGTTCGTG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG15528 FBgn0039742 FBtr0085591 3 1 1 137 3R 25875128 25875233 CCAGAACTTTGTAGCTATTCAG 58 25875012 25875030 CCCAGTTTGTCCATGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nlp FBgn0016685 FBtr0085552 3 1 1 137 3R 25831117 25831135 AAGGAGAACGAGTTCAACG 59 25835492 25835510 CTTGAATGTCACCTTCGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15817 FBgn0028476 FBtr0085395,FBtr0085396 1 2 2 80 3R 25057749 25057767 TAATTGCATCAGGGAAACG 58 25057811 25057895 GCTATGTATCCATTTGCGA 57 NA Drosophila melanogaster 50 CG5646 FBgn0039525 FBtr0085210 1 1 1 109 3R 23386077 23386095 TACCACAACATGTTCCTGG 59 23385927 23386006 TCACTGTAATAAGTGGCTGTC 59 NA Drosophila melanogaster 50 CG14253 FBgn0039467 FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074 3 5 5 84 3R 22809872 22809890 CCAGTATGCCTATGGAAGG 59 22809935 22810014 CGGTAACTTAAAGATTTGGCTC 59 NA Drosophila melanogaster 50 CG14545 FBgn0040602 FBtr0084913 1 1 1 60 3R 21676484 21676502 AGCATTGAGACTACGATGG 59 21676442 21676461 ATGACATCGGTGTACATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tok FBgn0004885 FBtr0084689,FBtr0084690 1 2 2 86 3R 20568665 20568888 CAGTCACAGAGTCAGAGTG 59 20568938 20568956 ATTCTTGTAGCTGGATGCT 58 NA Drosophila melanogaster 50 CG5768 FBgn0039198 FBtr0084620 3 1 2 173 3R 20215502 20215521 TTAGTTTGGGCATCAATTGG 58 20212185 20215366 CATTATAGCCCATGCTGTC 58 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 2 5 6 82 3R 20045369 20045389 CATGAACATCTACAACGAACC 59 20025659 20045326 GTGGATTCACGGTAAATGAC 58 NA Drosophila melanogaster 50 Aats-glupro FBgn0005674 FBtr0084511 2 1 2 100 3R 19782483 19782560 GAACCAAATACAAGGTGTACC 58 19782403 19782421 GTCATGGTACTCAGTGGTG 59 NA Drosophila melanogaster 50 Gdh FBgn0001098 FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498 2 4 4 97 3R 19763339 19763461 AAGCTAAGATCATTGCCGA 59 19763260 19763278 GTACAGATCGGGAATGACC 59 NA Drosophila melanogaster 50 Hmgcr FBgn0001205 FBtr0084451,FBtr0084450 3 2 2 70 3R 19574394 19574477 TATCATCAAATGGCTGACCA 59 19574510 19574528 TAACTACCAAGGCGATGAG 58 NA DesignRelaxed Drosophila melanogaster 50 Irk2 FBgn0039081 FBtr0084426,FBtr0084425 1 2 2 87 3R 19340991 19341009 TCTTTGCTCTCATCTGGTG 59 19340869 19340940 CAACCAGATTCCTCTTGGT 59 NA Drosophila melanogaster 50 CG6763 FBgn0039069 FBtr0084378 3 1 1 60 3R 19111410 19111428 CCAGAGGAATGGTTTCTCC 59 19111452 19111470 GCCACAATCGTACATACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6921 FBgn0038985 FBtr0084262,FBtr0084261 2 2 3 86 3R 18380434 18380453 ATAAAGATTGTCGAGGAGCG 59 18380566 18380585 CATAGGTGAGCTCATTAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG7046 FBgn0038979 FBtr0084259 2 1 1 86 3R 18319252 18319271 ATCTATGAAGCTCCGTTGTC 59 18319320 18319338 CATTGCTTCATCCTTGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sar1 FBgn0038947 FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208 3 5 5 60 3R 18184317 18184336 TTCACTACATTCGACTTGGG 59 18185255 18185273 GGAAGTAGTCCTTCCAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31423 FBgn0051423 FBtr0084248 3 1 1 60 3R 17944320 17944338 TGATTGTCATAGTGCCCTG 59 17944278 17944298 CCCAATTTGTGAAGTACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 how FBgn0017397 FBtr0084177 3 1 3 119 3R 17897749 17900174 ATGCTGATCATAGCGTAGG 58 17900257 17900275 GTATCTCAATGAAACCCGC 58 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 2 22 22 85 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202453 17202548 GTTCAGGAATACGATAGCG 57 NA Drosophila melanogaster 50 CG17298 FBgn0038879 FBtr0084056 1 1 1 154 3R 17109002 17109317 CAAAGTACTGTTCGTGCTC 58 17109435 17109515 GATGAACAACATGGGAGTG 58 NA Nonspecific Drosophila melanogaster 50 RhoGAP92B FBgn0038747 FBtr0083821 3 1 1 106 3R 15737488 15737506 GAGTTCTACTTGACCCTGC 59 15737575 15738046 CTCTCCATGACTTCACTGTC 59 NA Drosophila melanogaster 50 CG4572 FBgn0038738 FBtr0083861,FBtr0083860,FBtr0083862 2 3 3 60 3R 15688809 15688827 GTGGGCAATAAGACATTCC 58 15688767 15688785 TCTTCAAGTGAAGTTCCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11659 FBgn0038731 FBtr0083797 3 1 1 80 3R 15602169 15602249 GGCAACTATCATCTGACCA 59 15602107 15602125 AATGGTGGTAAGCAAACCA 59 NA Nonspecific Drosophila melanogaster 50 Vha13 FBgn0026753 FBtr0083804 3 1 1 194 3R 15469501 15469519 GAGGAGATCGAGAAGTTCC 58 15469266 15469284 GATGTTGTACACGTACTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31221 FBgn0051221 FBtr0083762,FBtr0083763 1 2 2 121 3R 15279980 15282852 CTAATGAGATCGGACCTGG 58 15282937 15282955 AAGAAGAACTTCACATCGC 58 NA Drosophila melanogaster 50 CG31221 FBgn0051221 FBtr0083762,FBtr0083763 1 2 2 121 3R 15279980 15282852 CTAATGAGATCGGACCTGG 58 15282937 15282955 AAGAAGAACTTCACATCGC 58 NA Drosophila melanogaster 50 CG5629 FBgn0027595 FBtr0083752,FBtr0083753 1 2 2 88 3R 14967736 14967823 AATACAAGCACAAGCTGGT 59 14967666 14967684 CAGCTCGTAGGAATCTGTG 59 NA Drosophila melanogaster 50 CG7669 FBgn0038607 FBtr0083576 3 1 1 139 3R 14188615 14188633 GAAGGACATTGTTTCGCTG 59 14188736 14188809 TAGCAGTAAGTGGTTGCTG 59 NA Drosophila melanogaster 50 PKD FBgn0038603 FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592 1 4 4 196 3R 14131625 14132352 AGCAGCTCACTGAATATCC 59 14131447 14131465 GTATTGTACTGGCAGTCCC 59 NA Drosophila melanogaster 50 PP2AB FBgn0042693 FBtr0083556,FBtr0083555 1 2 5 262 3R 14000710 14000728 ATCTATTCTACACGCCACC 58 14001241 14001333 GACAGCAAACATATTGATCG 57 NA DesignRelaxed Drosophila melanogaster 50 CG7785 FBgn0038564 FBtr0083539 1 1 1 80 3R 13848324 13848345 CTTCAATGGAAAGAATCTGGAG 59 13848385 13848461 CCATTGCCCACATAAATGAC 59 NA Drosophila melanogaster 50 CG7379 FBgn0038546 FBtr0083529 1 1 1 147 3R 13622584 13622663 GCAATCAGATCTCCTTTGG 58 13622455 13622473 ATTACATTTGGCCGTTCTC 58 NA Drosophila melanogaster 50 CG7523 FBgn0038533 FBtr0083490 2 1 1 97 3R 13496053 13496136 CATCACATATCTCTTCGATCAC 58 13495977 13495995 CCTTCTGCATGTTAGTCTC 57 NA Drosophila melanogaster 50 CG31190 FBgn0051190 FBtr0089444,FBtr0113397,FBtr0089443 1 3 4 82 3R 13308082 13308442 TAAGTCGCAGCTATGACAG 59 13308018 13308036 CATGCGAATCAGAAAGGTG 59 NA Drosophila melanogaster 50 CG31190 FBgn0051190 FBtr0089444,FBtr0113397,FBtr0089443 2 3 4 83 3R 13308082 13308443 ATAAGTCGCAGCTATGACAG 59 13308018 13308036 CATGCGAATCAGAAAGGTG 59 NA Drosophila melanogaster 50 CG31266 FBgn0051266 FBtr0083403 2 1 1 60 3R 12958870 12958890 CAAAGAATATAACCTTGGCGG 59 12958912 12958930 GCAAAGGTCAACTTATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ahcy89E FBgn0015011 FBtr0083378,FBtr0083379 2 2 2 124 3R 12804736 12804817 ATTGATGTGAATGGCTTGC 59 12804630 12804648 AAATTCACCAGTCTTCCCT 58 NA Drosophila melanogaster 50 gish FBgn0011253 FBtr0083265,FBtr0083263 2 2 8 82 3R 12118543 12121396 ATTAGGATCACATGCAGAGG 59 12121441 12121459 GCAACTCCATAACAAGAGC 58 NA Drosophila melanogaster 50 CG12785 FBgn0038410 FBtr0083275 2 1 1 82 3R 12094588 12094673 GTGGGACTACTAAGATCTGC 59 12094525 12094543 CATACAATGCCCAGTTCCT 59 NA Drosophila melanogaster 50 mtSSB FBgn0010438 FBtr0083277,FBtr0100152 1 2 2 101 3R 12030246 12030624 CAACTACAAATATGAGAACGGC 59 12030166 12030184 TTCAAGTATTCCAGCACGG 59 NA Drosophila melanogaster 50 Mhcl FBgn0026059 FBtr0083233,FBtr0083229 1 2 6 165 3R 11895717 11895735 GCTCTATCAGTGATCTGGA 57 11894322 11895588 TACTTGGCGTTATTTCTCG 57 NA Drosophila melanogaster 50 CG31292 FBgn0051292 FBtr0083199 1 1 1 60 3R 11732355 11732373 GACCCTCTCGAAGAATCTG 59 11732397 11732415 CACCTTGTAGAGGTATGGA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34274 FBgn0085303 FBtr0112469 3 1 1 85 3R 11558091 11558162 TTGCTTTATCAAGTTACGCG 59 11558210 11558228 CACGCAGATAATGTTCGTC 58 NA Drosophila melanogaster 50 CG6196 FBgn0038323 FBtr0083116 1 1 1 78 3R 11176180 11176198 ATCTAGGCATTAACAGCAC 57 11176120 11176139 TTCCTGTTCACTTCTATGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4338 FBgn0038313 FBtr0083066 3 1 1 60 3R 11102007 11102026 TAAGGTGCAGAATGAGTACC 59 11102049 11102067 AAGATCCCTAGGCTTATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpr9 FBgn0038282 FBtr0089376 3 1 1 81 3R 10888195 10888854 CTGAATGTCGTTGAACCCT 59 10888132 10888153 AGGTAAGGTTTATAGTGGAACC 59 NA Drosophila melanogaster 50 CG7886 FBgn0038248 FBtr0082976 1 1 1 111 3R 10453562 10453582 GCAGTGAGATTAAGTATGTGG 58 10453393 10453492 GAGGGATTAAGCTTGAAATCTC 58 NA Drosophila melanogaster 50 CG9722 FBgn0038209 FBtr0082906 2 1 1 60 3R 9979239 9979258 CACTTACTGCTGATAAACGG 58 9979198 9979216 ACCACAAATATCCAGGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34383 FBgn0085412 FBtr0112624,FBtr0112623 2 2 4 85 3R 9582377 9582623 AGATCAGGAACTTGGATGTC 59 9582671 9582689 TCTCCTCAACTGAATCAGC 58 NA Drosophila melanogaster 50 Task6 FBgn0038165 FBtr0082850 1 1 1 93 3R 9496548 9496643 CTTTAACCACTATAGGCTTTGG 58 9496476 9496495 AATATCAGTGCGAACATCAC 58 NA Drosophila melanogaster 50 CG8863 FBgn0038145 FBtr0082751,FBtr0082753,FBtr0082752,FBtr0082755 3 4 5 211 3R 9210112 9210130 GATGACCAAGTGTATTGCC 58 9210395 9210413 GTTGCTTGGGATCAAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 yellow-f FBgn0041710 FBtr0082723 2 1 1 96 3R 8818257 8818275 GAGCAGAACCTAGTGTCTG 59 8818113 8818197 GGCGATTATTGGGAAACTC 58 NA Drosophila melanogaster 50 CG14387 FBgn0038089 FBtr0082683 2 1 1 75 3R 8718229 8718247 TTTCATCTTCGGTCGAGAG 59 8718286 8718357 AAATCGACCATGTCCAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG5844 FBgn0038049 FBtr0082591 2 1 1 167 3R 8259974 8259992 AAATTTGGAGGTCTGTTGG 57 8260194 8260212 CAGCGTGATGTTCTTATCC 58 NA DesignNoJunction Drosophila melanogaster 50 Dip-C FBgn0000455 FBtr0082597 1 1 1 60 3R 8238219 8238237 ACATAACCTGCACATTCCC 59 8238177 8238197 TTGTAGATGAACTTCTGGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5167 FBgn0038038 FBtr0082583 3 1 1 61 3R 8233260 8233278 CCTACATGACGTATCCCTC 58 8233303 8233321 AATGATAGAGGCGAAGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4066 FBgn0038011 FBtr0082566 3 1 1 60 3R 8138697 8138718 TAATACTGAAACCTATCCGACC 59 8138736 8138757 TTGGTTGATATCTTCTATGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpr17 FBgn0051361 FBtr0082542 3 1 2 138 3R 7922730 7932871 TTGGGATACAAGTAGTCACC 58 7932972 7932990 ATTGGACTATCTGGCAGAG 58 NA Drosophila melanogaster 50 Ect3 FBgn0037977 FBtr0082487 3 1 1 92 3R 7827144 7827218 GGTGACAACCTATGTGGAG 59 7827273 7827292 AGGCGTATAAAGTGTTCCAG 59 NA Drosophila melanogaster 50 glo FBgn0037954 FBtr0089917,FBtr0089919 3 2 3 82 3R 7642968 7642986 TTTGTTCAGTTCGAAAGCC 58 7642468 7642923 ATCTCAATATACCTGTGCCC 58 NA Drosophila melanogaster 50 CG32852 FBgn0052852 FBtr0082449 3 1 1 63 3R 7468092 7468110 GCTACAGCAAACCAAAGAC 59 7468047 7468065 CTGCCCGTTCTTACTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18764 FBgn0042205 FBtr0082417 2 1 1 105 3R 7453761 7453852 CTCATCCACGAAAGGACTC 59 7453921 7453939 TATGGATTAGTTCGTGCCG 59 NA Drosophila melanogaster 50 CG6744 FBgn0037901 FBtr0082402 2 1 1 116 3R 7259979 7259998 CAACATCTCGGATCTAAGGG 59 7259675 7259900 GATTGGACTCGTTTGAGCT 59 NA Drosophila melanogaster 50 CG14681 FBgn0037820 FBtr0100117 2 1 2 299 3R 6515461 6515479 CTTTAGCTACGACGGAGAG 59 6516220 6516238 GCGTTCTTCTTTACCTGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12592 FBgn0037811 FBtr0082233 2 1 1 248 3R 6165649 6165667 GAAGAAGGTAATTCAGCGC 58 6165943 6165961 CTCATCGGAACTCTTTAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG12814 FBgn0037796 FBtr0082182,FBtr0110786 3 2 2 97 3R 5999289 5999307 CTCAAGTTCCTGGAGAACG 59 5999145 5999228 CCATAGGTATCGTTTGGCT 59 NA Drosophila melanogaster 50 CG12814 FBgn0037796 FBtr0082182,FBtr0110786 1 2 2 80 3R 5998355 5998373 CTTCCTGATCATGTTGCTG 58 5998140 5998314 TTCTCGATGATCTCTGTATTGG 59 NA Drosophila melanogaster 50 CG16790 FBgn0037713 FBtr0082112 3 1 1 91 3R 5395400 5395418 CGATGAATTCTCCCGATCC 59 5395266 5395284 CCTCATTCGTGTAGATCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8199 FBgn0037709 FBtr0082067 1 1 1 97 3R 5382485 5382619 CTCTTCTGTCGAAACAACG 58 5382680 5382698 ATTCCATAGCCCATAGGTC 58 NA Drosophila melanogaster 50 CG16779 FBgn0037698 FBtr0082125 1 1 1 80 3R 5298175 5298195 AGTTCCTACAAGATCAACACC 59 5298050 5298134 GGCACTATTTAGCAATTGCA 59 NA Drosophila melanogaster 50 Ada FBgn0037661 FBtr0081971 1 1 1 60 3R 4891302 4891321 CGTGATCGATGCAATTAAGG 59 4891342 4891362 CAGTAGCTTGACTGTTATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11984 FBgn0037655 FBtr0082008,FBtr0082009,FBtr0082007 1 3 3 162 3R 4837857 4837875 CATTGCGGAACTGTTATCG 59 4837618 4837636 TGTTGAGACTATGGGATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9801 FBgn0037623 FBtr0081945,FBtr0081944,FBtr0081946 2 3 3 110 3R 4564427 4564514 TAAATATCTGGAGGGCCGA 59 4564335 4564353 CCAGCTTCGTATGTATCCA 58 NA Drosophila melanogaster 50 CG11737 FBgn0037592 FBtr0081869 2 1 1 81 3R 4346201 4346220 AGAAGATGATCTTCAACCGT 58 4346263 4346336 CAGGACACCGACTTATAGAG 58 NA Drosophila melanogaster 50 Poxm FBgn0003129 FBtr0111026 2 1 1 116 3R 4146356 4146374 TACATCAGGGAACTGAAGC 58 4146258 4146276 CGATATGGAGCTCACACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tom34 FBgn0010812 FBtr0081788 2 1 1 100 3R 3860512 3860530 GATATGGAATCCAAGGTGC 57 3860594 3860671 TGCAGTATTCCTTCTCTGG 58 NA Drosophila melanogaster 50 Taf1 FBgn0010355 FBtr0081686,FBtr0081684 2 2 3 157 3R 2480377 2480939 CAGATGGCAGATGAATCCA 59 2481058 2481078 TTGTAAGGCCCATTATCATCC 59 NA Drosophila melanogaster 50 CG15186 FBgn0037448 FBtr0081674,FBtr0081673,FBtr0081672 2 3 3 97 3R 2319011 2319029 AGTTAACCAGATCCCTGGA 59 2319089 2319280 CAACTCGTCCATATTTGCAG 59 NA Drosophila melanogaster 50 CG17917 FBgn0037431 FBtr0081709 3 1 1 68 3R 2167822 2167841 GATGTAATACACATCGGACC 57 2168072 2168090 ACAATGTGCTGCTAAATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NPFR1 FBgn0037408 FBtr0078590 1 1 1 92 3R 2018052 2018070 ACACCCTGGTTGTTATAGC 59 2018126 2018206 AAAGTAGGTCCGATATGGC 58 NA Drosophila melanogaster 50 Obp83cd FBgn0046878 FBtr0078584 1 1 1 149 3R 1934343 1934999 CATCACCAACATGGAAAGC 59 1935112 1935130 TTGACAGGATAGTAGGCGA 59 NA Drosophila melanogaster 50 CG14676 FBgn0037388 FBtr0078645 1 1 1 60 3R 1673551 1673569 TTCAAGTCGATCCTCATCC 58 1673593 1673611 ACTCTCCTATCTCCATGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha26 FBgn0015324 FBtr0078701,FBtr0078700 1 2 2 106 3R 1418407 1418428 CTCAAGATCATGGAATACTACG 58 1418495 1418591 ACTTTCAGCACCTTCAGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CRMP FBgn0023023 FBtr0089685,FBtr0089686 3 2 4 87 3R 1402974 1403325 CTGGCTTATGACGATTTGC 59 1403376 1403394 TGGTAAAGTCACCCTTTCC 59 NA Drosophila melanogaster 50 CG34112 FBgn0086608 FBtr0110805 3 1 1 65 3R 219617 219635 GTTCGAAGAACAAGAAGCG 59 219570 219588 ATCCTGATCCAGATCCTCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40057 FBgn0058057 FBtr0111159 2 1 2 125 3L 24518909 24518930 CGAATGCAATGGATATGATGTC 59 24518394 24518823 GATCTATGAGTGTGGCGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG32230 FBgn0052230 FBtr0070041,FBtr0070040 1 2 2 99 3L 23332708 23332726 TAATCCCGATGTCACTTGG 59 23334565 23334583 GGAATAATCCCTCACAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 Mes2 FBgn0037207 FBtr0078563,FBtr0078561 2 2 3 90 3L 22939627 22939645 TATGAGGCCATGGATTTCC 59 22943660 22943678 TATGGCCATAGGTTGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12377 FBgn0037168 FBtr0078545 2 1 1 187 3L 22497198 22497216 TAGGCATACACATTCGACC 59 22496814 22496832 CTTGTTATTCAGGCTTCGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG11449 FBgn0037162 FBtr0078503 3 1 1 79 3L 22447943 22447962 AAAGGAGTCCGTGTTAAGTC 59 22448004 22448022 GAATCATGCGGTTGATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SAK FBgn0026371 FBtr0078387 2 1 1 91 3L 21507766 21507849 ATTTGCTAGCAGTGACTCC 59 21507693 21507711 ATTCCTCCCGTATTTGAGG 58 NA Drosophila melanogaster 50 CG12983 FBgn0037040 FBtr0078332 2 1 4 95 3L 20959003 20959238 GCTGGATAAGGAACAAGGA 58 20958926 20958946 GAATGGGTACATCCTGTAGTC 59 NA Drosophila melanogaster 50 obst-F FBgn0036947 FBtr0074860 1 1 1 60 3L 20193912 20193931 GAAACCACAATGAAAGTTCC 57 20193871 20193891 CGATATAGCAAACGGTTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075013 1 1 11 180 3L 19311973 19311991 CCAACAAACTGAACAGTCG 59 19303883 19306260 TTATATCCGACCTTCTGGC 58 NA Drosophila melanogaster 50 nes FBgn0026630 FBtr0075021,FBtr0075020,FBtr0075019 2 3 3 86 3L 19251647 19251665 ATACATGGTTGTGAGCACC 59 19251406 19251424 GAGTTGTTCAGAATGTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18135 FBgn0036837 FBtr0075044,FBtr0075043,FBtr0075042,FBtr0075045 1 4 4 60 3L 18984759 18984777 CAGACATGATCGAGTTGGA 59 18984717 18984735 TCGTGATAAATCACAGGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4174 FBgn0036793 FBtr0100567,FBtr0075111 2 2 3 255 3L 18594637 18594655 CCTATGCCATGACTGAAGG 59 18594289 18594370 TCGAAATAGTGACCAAGTCC 59 NA DesignRelaxed Drosophila melanogaster 50 term FBgn0003683 FBtr0075112 3 1 1 206 3L 18586680 18586698 CCATAATCTCCAGCTTCGT 59 18586492 18586511 TAATATCCATAACGGCCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14586 FBgn0036758 FBtr0075165 2 1 1 80 3L 17811380 17811466 CGAACTCATCAAACTAAGTGAG 59 17811321 17811339 TTTGTCTCCATCCAAGACC 59 NA Drosophila melanogaster 50 CG33052 FBgn0053052 FBtr0075229 2 1 1 177 3L 17421026 17421044 AAGCTGGAAAGTGATCTGG 59 17420810 17420828 ATAGATGCTCTGTGAGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6512 FBgn0036702 FBtr0075251,FBtr0075252 3 2 2 82 3L 17233768 17233786 CAATGAGATTGGTGTGGGT 59 17233650 17233669 TCAGGAAGTTAACGAACTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6652 FBgn0036687 FBtr0075291,FBtr0075292 1 2 2 80 3L 17014033 17014052 CCCTAGAGGAATCAATGGAG 58 17013905 17013992 GTACACTAATGTCCTCATCGT 59 NA Drosophila melanogaster 50 zetaCOP FBgn0040512 FBtr0075352,FBtr0075353,FBtr0075351 1 3 3 111 3L 16666237 16666255 TTCCATTAGCCTGATCCTC 58 16665632 16666162 ATCCAGAATAATGCCTCCG 59 NA Drosophila melanogaster 50 Syx8 FBgn0036643 FBtr0075365 2 1 1 64 3L 16579404 16579422 AGCATTGGACAGGTTAACC 59 16579358 16579376 AACAAGGCTATGATGACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7945 FBgn0036505 FBtr0075600 2 1 3 127 3L 15515670 15516075 CTGGACAGACCATTTAACG 58 15515504 15515523 ATGGACATCAGAAGGTAGTC 58 NA Drosophila melanogaster 50 CG9628 FBgn0036433 FBtr0075678,FBtr0075677 1 2 2 80 3L 14620524 14620542 TTGCTATGTGACCTTTGGA 58 14620586 14620664 CATGGAGTCAAATCACCGA 59 NA Drosophila melanogaster 50 Sox21a FBgn0036411 FBtr0075748 1 1 1 60 3L 14099830 14099848 GAATACTGGAAGCCATCAC 57 14099788 14099806 CATGAAAGCGTTCATTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9007 FBgn0036398 FBtr0075768 2 1 1 61 3L 14003675 14003802 TTTGGTCAGCAAATTGCTC 59 14003825 14003845 CTACTGCTTATAGCAGAGTGG 59 NA DesignRelaxed Drosophila melanogaster 50 caps FBgn0023095 FBtr0075832,FBtr0111005,FBtr0075833 1 3 3 87 3L 13222209 13222227 CAAACTAGCCACGAATTGC 59 13231812 13244269 GTTCTGCCGGTATAATCCT 58 NA InUTR Drosophila melanogaster 50 CG32103 FBgn0052103 FBtr0075982,FBtr0075984 1 2 3 80 3L 12406593 12406611 GATCGATATCCACGACCTG 59 12405540 12406550 GACTGCTGAAGGAATTTCTC 58 NA Drosophila melanogaster 50 CG5897 FBgn0036220 FBtr0076070 2 1 1 60 3L 11881331 11881351 TTATCAACGGGATAGAGATGG 58 11881291 11881311 ATATCCGTAACAGGTCATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11597 FBgn0036212 FBtr0110780 2 1 2 207 3L 11814813 11814946 CGTTGAAAGCAATTTGTCAG 58 11814625 11814643 AAATGATCAGGTGGCTAGG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG5946 FBgn0036211 FBtr0076079,FBtr0076078 3 2 4 106 3L 11811263 11811281 AAGGACATTCTACTGCGTG 59 11810404 11811193 CTATACTGCCAACCTTCGT 59 NA DesignRelaxed Drosophila melanogaster 50 mtTFB1 FBgn0036197 FBtr0076112,FBtr0114551,FBtr0114552 2 3 3 60 3L 11702737 11702756 ACGGACAAGATAGTCAAGTC 59 11702778 11702797 CCACCTCAAGAACTAAATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha16-3 FBgn0028667 FBtr0076090 1 1 1 65 3L 11466706 11466724 ATCATTGCGATCTATGGCC 59 11466752 11466771 GGTATACGAATCCGACAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Elo68beta FBgn0036128 FBtr0113161,FBtr0113162 3 2 2 78 3L 11094156 11094174 CTTATGTCAAATGGCTGCC 59 11094035 11094053 CTGTACATAATCACGTGCA 57 NA DesignNoJunction Drosophila melanogaster 50 l(3)01239 FBgn0010741 FBtr0076238 2 1 1 60 3L 11067089 11067109 CTGTGATAGAAACTCTGGAGG 59 11067049 11067067 CCACCAATTTGACGAAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6404 FBgn0027615 FBtr0076271,FBtr0076272 1 2 2 137 3L 10877848 10877866 CTAAGAAGGGATTCGTCGG 59 10877655 10877673 ACTTGTACGTCTTGACCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Or67d FBgn0036080 FBtr0076297 2 1 1 111 3L 10267181 10267274 CATCAGCTGTATACTAGAATGC 58 10267343 10267364 AGATGCAAGATATGGTACAGAG 59 NA Drosophila melanogaster 50 CG14177 FBgn0036013 FBtr0076378 2 1 1 85 3L 9591186 9591205 TAAGTGAGCATGATTTACGG 57 9591253 9591271 TATAGCCATTCCGTAGACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 phol FBgn0035997 FBtr0076475 1 1 1 60 3L 9447556 9447574 GAACAGTTGATCTATGCGG 58 9447514 9447532 CGATAAGCTCGATGTTACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bol FBgn0011206 FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538 3 4 4 131 3L 9101077 9101097 ATATACCCATGGATCAGTTCG 59 9100463 9100724 TGGTGGGTACATTCATTGG 59 NA Drosophila melanogaster 50 smg FBgn0016070 FBtr0076549,FBtr0076550,FBtr0076551 2 3 3 133 3L 8986300 8986318 CAGTCAACTCAAGGACCTG 59 8986128 8986204 TCTTACCATTCCATCTTGGC 59 NA Drosophila melanogaster 50 Cpr66Cb FBgn0035875 FBtr0076601 3 1 1 196 3L 8330741 8330759 ACCAGTACTACGAGGAGAG 59 8330919 8331020 GGGAGGAGCATAGTAATCC 58 NA Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780 1 8 8 125 3L 7811265 7811285 GATGACAAATACAAGGAGGAG 58 7810754 7811178 GTCGGCATATTGTGTTACC 58 NA Drosophila melanogaster 50 CG14838 FBgn0035799 FBtr0076801 3 1 1 147 3L 7579460 7579478 CATTATAGAGGCAAAGCGG 58 7579586 7579661 CTTCTTACCTTTGATCTCTTCG 58 NA Drosophila melanogaster 50 CG7548 FBgn0035792 FBtr0076830 3 1 1 109 3L 7499254 7499272 CTCCAGCTTGCTTCTACTC 59 7499163 7499181 CTACATTCTGTTGGGTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8560 FBgn0035781 FBtr0076868 1 1 1 116 3L 7395839 7395857 CTACCTGCTGTATCCTTGG 59 7395674 7395692 GTATACTTCGTTCCGGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8519 FBgn0035711 FBtr0076942 2 1 1 107 3L 6701486 6701505 GGAGTACGATCATCAGACTG 59 6701575 6701653 TATTCGTCTTCAGCCTTGG 59 NA Drosophila melanogaster 50 CG18769 FBgn0042185 FBtr0076973,FBtr0076970,FBtr0076972,FBtr0076971 2 4 6 163 3L 6544995 6545013 CACCACCCATAGAAGTCTC 59 6555511 6583715 CATAGATGTCTTCTCCCGTC 59 NA Drosophila melanogaster 50 D19A FBgn0022935 FBtr0077016 3 1 1 60 3L 6180791 6180810 GTATCCTTGCAATATCTGCG 58 6180750 6180768 AAGGTGATCCCTTAAAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myt1 FBgn0040298 FBtr0077118 3 1 1 77 3L 5771081 5771099 CACAAACCAAGGCAAATCC 59 5770964 5770982 TCGTGTACATGAACGTACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11357 FBgn0035558 FBtr0073310,FBtr0113143,FBtr0113142 2 3 3 147 3L 4551802 4551822 CGACGATGTGTTTATGAACAC 59 4551929 4552113 CCATTTGGAACGATATGAACG 59 NA Drosophila melanogaster 50 CG15014 FBgn0035532 FBtr0073340 3 1 1 60 3L 4321266 4321287 AATCTTCAGAAGAGTCCAAGTC 59 4321227 4321247 TTGTCATTCTCAGTAGAGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fit1 FBgn0035498 FBtr0073209,FBtr0073210 1 2 2 60 3L 4105445 4105463 AACATCACCAGGATACCAG 58 4105487 4105505 TGAACCTTTGAGGCTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14995 FBgn0035497 FBtr0073272,FBtr0073271 1 2 4 158 3L 4096937 4096957 CCCATGTATAACACCATAACC 58 4095866 4095983 GTAGTATTCCTTCATCGAGTG 57 NA Drosophila melanogaster 50 CG1135 FBgn0035489 FBtr0073202 3 1 1 294 3L 4041686 4041763 TTAAGAGCTCGGAACAACC 59 4042020 4042039 CGAATATTACGTTTGTTGCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG2162 FBgn0035388 FBtr0072981 1 1 1 80 3L 3039187 3039206 CCAAGTTACTCCAAGAACTG 58 3039248 3039335 TGTGAAAGACCGTATAGTCC 58 NA Drosophila melanogaster 50 CG1317 FBgn0035333 FBtr0072901 2 1 1 60 3L 2371547 2371568 CGATCAAGTACATTCATCAGGA 59 2371508 2371526 TATTCCTTGTGCGAGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ACXD FBgn0040507 FBtr0072874 2 1 1 81 3L 2242202 2242220 GATGATCATAACGTTCGGC 58 2242265 2242344 CCGTTTCCAGTTGTAATCC 58 NA Drosophila melanogaster 50 CG1887 FBgn0035290 FBtr0113125,FBtr0072859,FBtr0113124 2 3 3 61 3L 1894438 1894614 AATACAACCGAAACTTGGAG 58 1894396 1894417 CTTTAAGATTCAGCTGTATCCG 58 NA DesignRelaxed Drosophila melanogaster 50 Ptp61F FBgn0003138 FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718 3 4 4 145 3L 1346061 1346079 AAGAAACAGATCAAGTGCC 57 1345856 1345953 TCGGTTAATTTGAACCATCG 58 NA Drosophila melanogaster 50 CG2211 FBgn0035211 FBtr0072723 1 1 1 176 3L 1333837 1333856 AATCTTACTCAAGGAGTGCC 59 1333624 1333700 GTAATCAAGATGCATCACAGC 59 NA Drosophila melanogaster 50 CG13908 FBgn0035178 FBtr0113121 1 1 2 201 3L 990851 990869 TATCATCACGCCAACTCAC 59 991034 991103 GTAGGGTGAATTTCTTGCG 58 NA DesignRelaxed Drosophila melanogaster 50 Glut1 FBgn0025593 FBtr0112910 3 1 6 167 3L 982069 982087 CCAAGTTCGCTACGATAGG 59 982287 983843 CAAAGAACTCCTTGATCAGGA 59 NA Drosophila melanogaster 50 RabX6 FBgn0035155 FBtr0072577 3 1 1 60 3L 691085 691103 TGGACATTGTGACCTATGC 59 691127 691145 AGATCGCTCTTATTGCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kaz1-ORFB FBgn0063923 FBtr0072488,FBtr0100851,FBtr0072493,FBtr0072490 1 4 6 110 3L 217695 217713 AGTACAATCCAATCTGCGG 59 217866 217884 GACAAATTCCCTTGTGCAC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 snoRNA:Psi18S-841d FBgn0083016 FBtr0113524 3 1 1 62 2R 17218438 17218456 ACTAGCTTCGTGTGATGAC 59 17218481 17218500 ACATGGATAAGACGCATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-841b FBgn0083018 FBtr0113520 3 1 1 96 2R 17217783 17217801 CAAATGCACTCTGTGTCAC 59 17217858 17217879 GCACTAATTGCATGGATAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL19 FBgn0002607 FBtr0072406,FBtr0072405 1 2 2 62 2R 20856642 20856660 GATCGCTAACACAAACTCG 58 20856532 20856550 TTGATGATCAGACCATCCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG5594 FBgn0025698 FBtr0072137,FBtr0072139 2 2 4 97 2R 19810464 19810482 CTTATACCTACGAGCGGAC 59 19810543 19811533 TGTTTGAACCACTTTGGAG 58 NA Drosophila melanogaster 50 CG5597 FBgn0034920 FBtr0072131 1 1 1 80 2R 19775913 19776011 CCATCACGATAATATCCAACG 58 19776053 19776071 CATCGAAGTATCCCTCCTC 58 NA Drosophila melanogaster 50 CG4091 FBgn0034894 FBtr0072097 1 1 3 259 2R 19588108 19588336 TGGAACTTGGAAGTCATGG 59 19587867 19587885 CTGAACTGATTGTTCCGGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG17664 FBgn0034883 FBtr0072107,FBtr0072108 1 2 2 64 2R 19491491 19491509 ATGACCACTGGATCTACTG 58 19491445 19491463 CTTGTAGATCACCGAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 apt FBgn0015903 FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067 1 4 5 115 2R 19468991 19484433 GGTCAACAAACAGTATTCGG 59 19484508 19484591 GTGTCATTTCCGTCTTTATGTC 59 NA Drosophila melanogaster 50 CG3085 FBgn0034816 FBtr0071963 2 1 1 60 2R 18963471 18963546 GAGAAATCCCAAGAACTCC 57 18963567 18963588 CTTTATGTTCTTCACGTTCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG34369 FBgn0085398 FBtr0112594 2 1 1 100 2R 17855780 17855861 AATTCCTTCGACTACTGGC 59 17855924 17855943 ATAATCTGCGCGTAGATCTC 59 NA Drosophila melanogaster 50 CG4372 FBgn0034665 FBtr0071738 2 1 1 60 2R 17726169 17726187 AAGGATCAAATTGTTCGGC 58 17726127 17726146 CCACGTACTTATCAAGAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30391 FBgn0050391 FBtr0071621 1 1 1 60 2R 17153487 17153505 CTACAAGATCACCATGCAG 57 17153445 17153465 TTCGATATCATAGATCTGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4266 FBgn0034598 FBtr0113100 1 1 2 151 2R 17054801 17054819 AATATGTCAAGAGCTCGCA 59 17054539 17054687 CTTCTTCTCGTCTAACAGGT 58 NA Drosophila melanogaster 50 CG3295 FBgn0034573 FBtr0071547 2 1 1 61 2R 16903819 16903837 CTTACAAGCACTTCTTGGG 58 16903776 16903797 GTCTTTGAGGAATATGAACGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15651 FBgn0034567 FBtr0071553 3 1 1 104 2R 16872814 16872832 GAAATGCTCTACATGCAGG 58 16872671 16872689 CTGTTTGGTGTGAAAGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11200 FBgn0034500 FBtr0086300,FBtr0086299 3 2 2 72 2R 16193965 16193983 TATCAGTACCTGGGAATCG 57 16193848 16193930 TATAAAGTGCCACTCGATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG11041 FBgn0034481 FBtr0086310 1 1 1 80 2R 16034203 16034580 TGAATCAGCTCATGGTAGC 59 16034624 16034642 CATTCCCATCCATATCCGA 58 NA Drosophila melanogaster 50 CG15099 FBgn0034400 FBtr0086628 3 1 1 81 2R 14731163 14731241 GGATAAAGATATCAGTGCCTC 57 14731102 14731120 CTTGAGCTTCTTGATGCTC 58 NA Drosophila melanogaster 50 Mctp FBgn0034389 FBtr0110970,FBtr0110971 2 2 2 107 2R 14660396 14660473 TATGTCCAGAGCTGTTTCG 59 14660543 14660562 AACTAGAGGTACTGTCTCCA 58 NA Drosophila melanogaster 50 CG5482 FBgn0034368 FBtr0086661 3 1 1 105 2R 14518209 14518227 CAAGATTGCCGCTTATGAC 59 14518062 14518140 GCCCTCCAATATTCTTCCT 58 NA Drosophila melanogaster 50 CG30116 FBgn0028496 FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718 2 4 4 80 2R 14363162 14363624 GATTATCGCCTTATGAACGTG 59 14363102 14363120 CGATTGAAAGGCTTGTTCC 59 NA Drosophila melanogaster 50 CG5174 FBgn0034345 FBtr0086685,FBtr0086689,FBtr0086687 3 3 7 135 2R 14311982 14312385 AGAGCACTGTATACCAACG 59 14312484 14312502 ATAGAACGCATCGATTCGG 59 NA Drosophila melanogaster 50 GstE6 FBgn0063494 FBtr0086674 1 1 1 60 2R 14293755 14293776 CCATTATTGCCTATTTGGTCTC 59 14293797 14293815 GGATCTTTCGGGTATAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Idgf5 FBgn0064237 FBtr0086668 1 1 1 149 2R 14281820 14281838 GTTTAGTTCCTCATCGGTG 57 14281951 14282035 TCAATAAAGAGTTCCGCTG 57 NA Nonspecific Drosophila melanogaster 50 sbb FBgn0010575 FBtr0086765 2 1 3 85 2R 14170887 14170905 CAACTAATGGGTGGATTGC 58 14170734 14170838 AGTACACCCGCTTTAAGTG 59 NA Drosophila melanogaster 50 pen-2 FBgn0053198 FBtr0089842 2 1 1 61 2R 14165339 14165358 GAGCAGAGCCAAATAAAGAG 58 14165456 14165474 ATCAGCCAGAATAGAGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14483 FBgn0034248 FBtr0086902 3 1 1 139 2R 13473413 13473431 AGAAGCGGGAACTTTATCC 59 13473292 13473312 TATCTACTTCTTCTGCTTGCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14482 FBgn0034245 FBtr0086905 3 1 1 67 2R 13460016 13460162 TTCCTTCATCCGATCTGGA 59 13459967 13459985 AGTCGGTGTAGTAAAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4853 FBgn0034230 FBtr0086938,FBtr0086939 2 2 2 81 2R 13403814 13403895 CGGAAATATTAAAGTTGGGC 57 13403939 13403957 TTAAAGCATTCCAGAGCTG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 qkr54B FBgn0022987 FBtr0086925,FBtr0086923 3 2 3 81 2R 13359115 13359204 CATCACAGCTATAGGAGCTC 59 13359245 13359266 CCAATATGGACATCACTTTCTG 59 NA Drosophila melanogaster 50 CG34460 FBgn0085489 FBtr0112766 1 1 1 80 2R 12714656 12714790 CATCCACTACTGTCAGATACC 59 12714831 12714850 CATTGTGGAAAGTCAACGTC 59 NA Drosophila melanogaster 50 fidipidine FBgn0025519 FBtr0087185 3 1 1 95 2R 12151032 12151116 AAAGATGAGCTCGATCTGG 59 12150955 12150974 TGTAGGATCGAGATCAATGC 59 NA Drosophila melanogaster 50 Cdk5 FBgn0013762 FBtr0087350 2 1 1 132 2R 11457930 11457948 GATGAAGATCTTCCGTGTG 57 11457754 11457772 GTTTAGCCTAGGTACCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 GalNAc-T1 FBgn0034025 FBtr0087332,FBtr0087331 1 2 2 60 2R 11401756 11401906 GACTTCCATCCTTACAAATTCC 59 11401927 11401945 TGCGGGCAGTATTAATACC 59 NA DesignRelaxed Drosophila melanogaster 50 Hr51 FBgn0034012 FBtr0114456 3 1 1 142 2R 11225704 11225910 ATGACAATGATGACGACTC 57 11226016 11226034 TGTCTCGTAAACTGTTTCG 57 NA Drosophila melanogaster 50 AGO1 FBgn0026611 FBtr0087613,FBtr0087612,FBtr0087614 2 3 3 103 2R 9835755 9835774 GTATCAGCTATGCCATACGT 59 9835605 9835689 CCAGATGATATCTGGCACG 59 NA Drosophila melanogaster 50 CG33156 FBgn0053156 FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681 3 5 5 83 2R 9436514 9436532 TTATGGTGACTCCCATCTG 58 9436390 9436470 ATACTGATATCTTCAGCTCCAC 59 NA Drosophila melanogaster 50 CG33470 FBgn0053470 FBtr0087657,FBtr0087656 3 2 2 65 2R 9299575 9299593 CAACACGTTTGTTAACCGA 58 9299681 9299699 AAATTGGGACCACTGATGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG4616 FBgn0033806 FBtr0087737,FBtr0087736 3 2 2 81 2R 9095634 9095654 CATCACAGGAATCAAGAAAGC 59 9095696 9095774 TTGGCAATTGTATCTTGCTG 59 NA Drosophila melanogaster 50 CG33007 FBgn0053007 FBtr0087778 2 1 1 60 2R 9035421 9035440 GACACTAACATCTCGTTGTC 58 9035380 9035399 TTTCCTGAGGACTATAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sca FBgn0003326 FBtr0087855,FBtr0087856 1 2 2 158 2R 8687287 8687506 AAGAATAAGCTCACCCACC 59 8687628 8687646 GATAATGGCCTCGTACTGG 59 NA Nonspecific Drosophila melanogaster 50 CG30203 FBgn0050203 FBtr0087894 3 1 1 81 2R 8201008 8201028 CATATAAGCAAACAGGAGGTG 58 8201071 8201179 TAGGATCTACCTCCTGCTG 59 NA Drosophila melanogaster 50 CG9027 FBgn0033631 FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897 1 4 4 188 2R 7269617 7269636 GATAATACCCAGGTCAAGGG 59 7269385 7269466 ACCGTGATCAACCTTATCG 59 NA Drosophila melanogaster 50 Gr47b FBgn0041241 FBtr0088127 3 1 1 114 2R 7250563 7250644 ATTTACCTGGTGTACAACGG 59 7250721 7250739 CAATGTCCACATCTTTGCC 59 NA Drosophila melanogaster 50 kappaTry FBgn0043471 FBtr0088165 2 1 1 60 2R 7225815 7225835 GATATAGGTGTCCTCCTTCTG 58 7225775 7225793 TTGAGCTTATTCCGAGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shn FBgn0003396 FBtr0088099,FBtr0088100,FBtr0088101,FBtr0088098 3 4 4 116 2R 7101598 7101616 TATGGACTTTGACCAGCAG 59 7101693 7101777 TCATCCGTATCACTACTTTCAG 59 NA Drosophila melanogaster 50 CG33476 FBgn0053476 FBtr0088319 1 1 1 60 2R 6297728 6297746 GCCAATTCCTGATGAATCC 58 6297686 6297704 ACCAGCCGTTTGTATACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414 1 10 10 69 2R 5991854 5991872 TGTCGACAGTCGATAAGGA 59 5991904 5992230 TCATCGTAACGTTCTGACTG 59 NA DesignRelaxed Drosophila melanogaster 50 mRpL42 FBgn0033480 FBtr0088403 1 1 1 151 2R 5954331 5954350 CGTTTATACGGAGGATTTCG 58 5954464 5954482 GTGTTCTCGTAGGGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12128 FBgn0033473 FBtr0088394 3 1 2 81 2R 5915137 5915219 AACCTCAAAGTGAGAGCTG 59 5915263 5915282 CAATAAACACCTGTTTCCCG 59 NA Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 1 9 9 87 2R 5738879 5738966 CCGTTAAGGAGATCCATGTC 59 5738811 5738829 ATATCGATGACAGTTCCGG 58 NA Drosophila melanogaster 50 CG8635 FBgn0033317 FBtr0088727 2 1 1 130 2R 4518513 4518590 CCACCACGGATATTATTTGC 59 4518402 4518420 CTTCAGCACATATCCAGCT 59 NA Drosophila melanogaster 50 Rs1 FBgn0021995 FBtr0088788 1 1 1 104 2R 4053428 4053632 TCCATTGAGGTTCTCATTCTG 59 4053698 4053716 GGTCTGACGTGTCTTACAG 59 NA Drosophila melanogaster 50 CG11508 FBgn0033267 FBtr0088817,FBtr0114490,FBtr0088818 2 3 3 60 2R 4017214 4017232 GTACGTTTAATCGCAGGAC 58 4017172 4017192 TTCACGATGAAGCTATAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tor FBgn0003733 FBtr0112837 3 1 3 85 2R 3592968 3592987 CAGAAAGGCTGAAACAACTG 59 3590738 3592923 TGATATTCGTAGCCCAATACTG 59 NA Drosophila melanogaster 50 CG11113 FBgn0033165 FBtr0113048 1 1 1 60 2R 3289659 3289678 AAACTACATAATCCTGCCGA 58 3289700 3289719 TTCATCTGCAAAGATGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111082 2 1 60 88 2R 3247291 3249236 ATTGGTCATCACAGAACCC 59 3247221 3247240 TATCCTCCTGCCTAATCCTC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111101 3 1 60 125 2R 3219876 3229224 TGAAAGTTAATGTACCTCCCAG 59 3219772 3219792 CTTTCTTCCATGTAACTTGGG 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111064,FBtr0111057,FBtr0111100 3 3 60 85 2R 3247004 3247022 AGCACCTTAAGGGAAAGAG 58 3236471 3246958 CTTGTACCATCTAAAGAAAGGC 59 NA Drosophila melanogaster 50 CG17082 FBgn0039994 FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289 3 6 6 91 2R 644085 644172 TTCTATTGGTCGATCAAAGGAG 59 644224 644242 CATTCTCTGAGGCTGACAG 59 NA Drosophila melanogaster 50 Stlk FBgn0046692 FBtr0111111 2 1 2 176 2R 448287 450361 AAATCAAGGTTCCCTATCCC 59 450499 450518 CGACATTGCTTAAGAAACGA 58 NA Drosophila melanogaster 50 Cyp6t2Psi FBgn0041336 FBtr0081529 2 1 1 60 2L 21283849 21283867 ATAAGACTTGGTGGGAGAC 58 21283807 21283828 GTCAAATTCTTTCCAGAAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snRNA:U5:38ABa FBgn0043022 FBtr0081315 3 1 1 63 2L 19811993 19812014 GAGAGGAACACTCTAATGAGTC 59 19811951 19811972 CCCAACTAAATATTTAGCCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11629 FBgn0032965 FBtr0085950 1 1 1 60 2L 21897010 21897028 ACACAGGGAAATATCCGTC 59 21896968 21896986 TAGCTTTCTGCATCATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2225 FBgn0032957 FBtr0085918,FBtr0085915 2 2 5 117 2L 21670616 21670636 GAACTTACACCCGTTAAACAG 59 21670466 21670537 CTATTAACGATCGCACCGT 59 NA Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081442,FBtr0081441,FBtr0081444,FBtr0081447 1 4 8 100 2L 20876928 20876946 TCCAAATGATGTCCCACAC 59 20874424 20875092 CGTGAACAGAAATTGTCTATCC 59 NA Drosophila melanogaster 50 CG15475 FBgn0032867 FBtr0081381 2 1 1 63 2L 20615083 20615101 AAGGATCTTAAAGAGGCGC 59 20615128 20615146 TGGTCTCTTTAACATGCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12617 FBgn0040996 FBtr0081351 3 1 1 61 2L 20294907 20294925 AAACATCTGAACGAGATGG 57 20294950 20294968 GGAATATAGTTCCGACCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10462 FBgn0032815 FBtr0100351,FBtr0100352,FBtr0081325 2 3 3 91 2L 19733222 19733240 GACAAACGTTTCCGAACTC 59 19733056 19733168 TCTAACGAGCATATCTTGCA 58 NA Drosophila melanogaster 50 CG10186 FBgn0032797 FBtr0081280,FBtr0081281 2 2 2 81 2L 19511020 19511040 TTAGTTTCTACAACGACCTGG 59 19510897 19510980 TCCATACATCTCGATATGATGG 59 NA Drosophila melanogaster 50 CG17349 FBgn0032771 FBtr0081198 3 1 1 105 2L 19370705 19370723 AGTTGTTGTACCTCAGGTC 58 19370857 19370934 ATGTCGATCTTTGGAGGAG 58 NA Nonspecific Drosophila melanogaster 50 l(2)37Cb FBgn0086444 FBtr0081163 3 1 1 116 2L 19126465 19126483 AGTACAAGAAGCAACTGCT 59 19126307 19126385 CGTATTCAGATCGCTCTCC 59 NA Drosophila melanogaster 50 CG10383 FBgn0032699 FBtr0089628 3 1 1 117 2L 18692897 18692976 ATCCCATTGAGGACATTCAC 59 18692799 18692819 GGATCCTTTGTAATATGGTGC 58 NA Drosophila melanogaster 50 qua FBgn0003187 FBtr0080997,FBtr0080996 2 2 2 97 2L 17489499 17489519 TCGTATCTGGGAAACATATCC 59 17489361 17489440 GATCGAACATCGTAACCCT 59 NA Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0080978,FBtr0080977 1 2 6 143 2L 17394476 17398601 CAATTCGGCTTATACAGATCTC 58 17398705 17398860 TAATCATAAGATGCGCGAC 57 NA Drosophila melanogaster 50 CG15133 FBgn0032619 FBtr0080948 3 1 1 81 2L 16895765 16895783 TCACCACCTAAGACTAGCA 59 16895826 16895906 ACATTTCATCCGGTATCTCTG 59 NA Drosophila melanogaster 50 CG33552 FBgn0053552 FBtr0091522 2 1 1 60 2L 16682968 16682988 GCATACTACATTACTTGCAGC 59 16683010 16683028 CGGATCATCTGTGATTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 chif FBgn0000307 FBtr0080838,FBtr0080839 2 2 3 60 2L 16345234 16345254 CACTACCACAACTACTACGAC 59 16345194 16345212 TTCATCGTCTTTGCTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syx5 FBgn0011708 FBtr0080831 2 1 2 115 2L 16308277 16308295 TATTGGCAAGAACATAGCC 57 16308442 16308460 TGATATAGGTCAGCTCCTG 57 NA DesignNoJunction Drosophila melanogaster 50 Gli FBgn0001987 FBtr0080769,FBtr0080766,FBtr0080765,FBtr0080768,FBtr0080767 1 5 5 90 2L 15758069 15758149 TAGATATGGCAATCCGACG 59 15757997 15758017 GGTATTGATGTTCAAGTACCG 58 NA Drosophila melanogaster 50 lace FBgn0002524 FBtr0080738 1 1 1 106 2L 15503218 15503302 GGATCCAAGAAACTGATTGAC 58 15503370 15503388 GTCTTCATGGAGGTAAGGA 57 NA Drosophila melanogaster 50 CG4168 FBgn0028888 FBtr0080716 3 1 1 219 2L 15176145 15176165 GATTTGACAACTGTAACTGGG 59 15171527 15172142 CTGTGCATGAACTCAAACC 59 NA DesignRelaxed Drosophila melanogaster 50 cenG1A FBgn0028509 FBtr0080548,FBtr0080546,FBtr0080547 3 3 3 150 2L 13896605 13896623 CAGGAGATCTTCAAGAGCC 59 13896737 13896819 TAGCCCATTCAGGATTTGG 59 NA Drosophila melanogaster 50 CG6043 FBgn0032497 FBtr0114471 2 1 5 150 2L 13274368 13276257 ACTTTGGTGGTAATGGAGTC 59 13276455 13276474 AATGATCGACTGGGTATAGC 59 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020 2 17 17 87 2L 12723992 12724013 CAAGACCTATCAGATCAGACAG 59 12724061 12724214 TTTGAGCACCTTAATGCCA 59 NA Drosophila melanogaster 50 Oatp33Eb FBgn0032435 FBtr0080370 1 1 1 96 2L 12448982 12449601 TCCACTGATTGTGGATTGG 59 12449661 12449679 GATGGGATGATAGACGTCC 59 NA Drosophila melanogaster 50 Patsas FBgn0029137 FBtr0080363,FBtr0080362 1 2 2 60 2L 12101337 12101356 ATATCAGAATCCCTTCTCGC 59 12101296 12101314 CAGGCAGACAAAGAATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 crol FBgn0020309 FBtr0080262 3 1 4 149 2L 11797737 11798678 CTTCATCTGCAAAGTTCCC 58 11797606 11797624 GCATTATGTGAGATGAGCG 58 NA Drosophila melanogaster 50 Mst33A FBgn0028412 FBtr0080271,FBtr0080272 1 2 2 60 2L 11585776 11585795 GGGATCTCTATCGGAATGTG 59 11585735 11585755 TCAACTCTGGATACTTTGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17139 FBgn0032307 FBtr0100836 1 1 1 106 2L 10844747 10844822 GAAGTCGGACTGAAATTTGAG 59 10844661 10844679 ACGTTTCCATACAGGTTGG 59 NA Nonspecific Drosophila melanogaster 50 Nos FBgn0011676 FBtr0100487,FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100489,FBtr0100486 1 8 10 80 2L 10806031 10806051 GCTACAGAAGGATCAAATCCT 59 10805730 10805989 TCCTGCACATATGTCTTCG 59 NA Drosophila melanogaster 50 CG6444 FBgn0032293 FBtr0080112 2 1 1 68 2L 10733154 10733173 CTACTAAAGCATAGCAACGG 58 10733204 10733222 TTAGGAGTTGTTGTCCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS7 FBgn0032236 FBtr0080007 2 1 1 71 2L 10386949 10386967 GTCCAAGCTTTACCATGTG 58 10387002 10387020 GTATCGTCGTGAAAGATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4995 FBgn0032219 FBtr0079989,FBtr0079990 1 2 3 60 2L 10322825 10323681 CAATGATAAGGATCCCTACCG 59 10323703 10323721 GGCCTTTAGTTGAATGTCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5640 FBgn0032207 FBtr0080077,FBtr0080075,FBtr0080076 2 3 3 80 2L 10275748 10275766 ATGCTTTCCTAGCATATCG 57 10275619 10275705 GATATAAGACGCCGATTGAG 58 NA Drosophila melanogaster 50 CG4946 FBgn0032203 FBtr0079983 1 1 1 137 2L 10265650 10265669 CGGAACCATTAGGTATTCCT 58 10265769 10265842 TTGAAGAAGTCCACAACGT 59 NA Drosophila melanogaster 50 Dref FBgn0015664 FBtr0079889 3 1 1 91 2L 9964857 9964936 AGAAGTTGGGTCTGAAACTG 59 9964785 9964803 CTTAAGATCGGACTCCACG 59 NA Drosophila melanogaster 50 nAcRalpha-30D FBgn0032151 FBtr0079913,FBtr0079914,FBtr0079915 3 3 6 135 2L 9807416 9807434 TATACAAATTCGTCGCCGT 59 9802427 9807317 AATTGTAACTCCCAGCGTC 59 NA Drosophila melanogaster 50 CG17633 FBgn0032144 FBtr0079868 1 1 1 60 2L 9769242 9769261 CGACTCAATCATGTTCTTGG 58 9769282 9769302 CACGATTATCTGAATATCGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp4e3 FBgn0015035 FBtr0079925 1 1 1 80 2L 9749082 9749163 CAGGCATTCAGAGATATGTG 58 9749021 9749040 TAAACTAAACACGCGATTGG 58 NA Drosophila melanogaster 50 gcm FBgn0014179 FBtr0079855 1 1 1 60 2L 9580641 9580660 AGAGATTCACTACGAAACGG 59 9580600 9580621 CATATCGTAGGAGTACATTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34181 FBgn0085210 FBtr0112374 3 1 1 60 2L 9368048 9368068 TGGCTTTCAGGACTAATTACC 59 9368090 9368108 CTTCAAGGACGTACCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eaat1 FBgn0026439 FBtr0079802,FBtr0079801,FBtr0079800 3 3 3 147 2L 9338300 9338321 AGATCATGTACATATCCTTCCC 58 9338514 9338599 TAAGTAATGGCTCTGGTAGC 58 NA Drosophila melanogaster 50 CG9586 FBgn0032101 FBtr0079774 3 1 1 188 2L 9165838 9165956 CTCAATACTCCCAGACTGC 59 9165668 9165686 TTTCCCGATCCTCTTTGTC 59 NA Drosophila melanogaster 50 Dh31 FBgn0032048 FBtr0079700,FBtr0079699 2 2 2 72 2L 8493010 8493028 CTCATGGAACTGATGACTC 57 8492792 8492974 TTCGTTTGGAATTCTCCAG 57 NA DesignRelaxed Drosophila melanogaster 50 Rbsn FBgn0031991 FBtr0079581 1 1 1 80 2L 8161359 8161378 AATAACATGGCAGCTAACCA 59 8161421 8161504 TTGAAGATCAGACCCTTGG 58 NA Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567 2 8 9 165 2L 8089727 8105702 CAATCACTTGATAAGCTGGTG 59 8106859 8106877 GAGAAGGTACATCCGTCAC 59 NA Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567 1 8 9 163 2L 8089727 8105702 CAATCACTTGATAAGCTGGTG 59 8106857 8106875 GAAGGTACATCCGTCACAG 59 NA Drosophila melanogaster 50 CG34010 FBgn0054010 FBtr0100065 1 1 1 80 2L 8009951 8009970 TATGGAGAACAATCTCGCTG 59 8009836 8009911 CTACCATGAGGAGATCTTAGAC 58 NA Drosophila melanogaster 50 sip2 FBgn0031878 FBtr0079360,FBtr0079357,FBtr0079359,FBtr0079358 1 4 5 85 2L 6961943 6961961 CAATGGAATCGATTCAGCC 58 6961812 6961830 GAGTTCGTTCATCAACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13766 FBgn0031834 FBtr0079330 1 1 1 73 2L 6565805 6565823 GAATTGGCCTTCTATCTGC 58 6565750 6565768 TTGTTCATGTTCTCATCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9536 FBgn0031818 FBtr0079267 2 1 1 166 2L 6475577 6475595 CAGCGTATTGGTTAATCCC 58 6475254 6475447 CCTTCAAGGCAATTTGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 ppk7 FBgn0031802 FBtr0079281 2 1 1 88 2L 6353159 6353178 AATGGACCTACTGTTTCCAC 59 6352972 6353051 AGATGAGCAGGTCATTGTG 59 NA Drosophila melanogaster 50 Cpr FBgn0015623 FBtr0079250 2 1 2 98 2L 6342340 6342735 ATTCCATACAACCCACCAC 59 6342796 6342815 CATAGAAGACGACCAGACTG 59 NA Drosophila melanogaster 50 CG9135 FBgn0031769 FBtr0079186,FBtr0079185 2 2 2 130 2L 6052013 6052091 AGAAGAGAAGTACCGATATGTG 59 6052182 6052200 ACTTGATGTCTTGGCTGAG 59 NA Drosophila melanogaster 50 nompC FBgn0016920 FBtr0112891 2 1 3 113 2L 5358662 5358681 AATGACACCACTACACTTGG 59 5358754 5358806 GTTAATGGTTTGTTCTCGATGG 59 NA Drosophila melanogaster 50 Msp-300 FBgn0053715 FBtr0091707,FBtr0091706,FBtr0091705 2 3 3 89 2L 5155461 5155479 GTTTCTGTGAGAAGACCCT 58 5155532 5155604 CATTGCGGAAATGAACCTC 59 NA Drosophila melanogaster 50 CG5828 FBgn0031682 FBtr0079018 2 1 1 67 2L 5094357 5094375 GATTCTAGGCACCAGTGAG 59 5094406 5094424 GATCTGTAAATCCGTAGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3058 FBgn0031601 FBtr0077435 2 1 1 60 2L 4403650 4403668 TGTACGAGTTGTACGATCC 58 4403692 4403710 ATCATGATGTGCTTGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL40 FBgn0003941 FBtr0077470 1 1 1 62 2L 4228204 4228222 CATTCAGAAGGAGTCCACC 59 4228248 4228266 GAGGGCTCAATGATACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lectin-24Db FBgn0040102 FBtr0077469 1 1 1 60 2L 4188416 4188434 TATCCTTGGAGGAATCAGC 58 4188458 4188476 ATTCGGTCCAGTCTATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Shaw FBgn0003386 FBtr0089274,FBtr0089275 2 2 2 80 2L 3721575 3721651 GCTCAACTATTACAGAACTGGA 59 3721691 3721710 CAGAACTCCAATTCCTCCTC 59 NA Drosophila melanogaster 50 lectin-24A FBgn0040104 FBtr0077539 1 1 1 60 2L 3717571 3717589 AGTATGTTGCTATCCACCA 57 3717529 3717549 GCTTCGTTCGCTAATATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 for FBgn0000721 FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305 3 10 10 83 2L 3624270 3624291 CAGCTAATTTCCAATCTAGACG 58 3623866 3624229 GAATTCCTCGTTGATCTTTCTG 59 NA Drosophila melanogaster 50 CG17593 FBgn0031544 FBtr0077525 1 1 1 130 2L 3516254 3516333 GAGTATACGGATCTGAGCA 57 3516427 3516445 ATAATACGTGACTCGAGGA 57 NA Drosophila melanogaster 50 CG31954 FBgn0051954 FBtr0077563 3 1 1 61 2L 3509607 3509625 CAACTACACCAATGTGGAC 58 3509564 3509582 CAAACTTGATGGGATGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9664 FBgn0031515 FBtr0077607,FBtr0077605 3 2 3 90 2L 3292520 3292538 TGTGAATCGCTCATCACTC 59 3292290 3292466 CTATCAAGGCTGTCTCCTC 58 NA Drosophila melanogaster 50 gammaTub23C FBgn0004176 FBtr0077641 3 1 1 125 2L 2973361 2973439 ACTCCAAGCTCTACAATCC 58 2973527 2973546 GGTCAATGATGTCGAATACC 58 NA Drosophila melanogaster 50 CG9867 FBgn0031421 FBtr0077767 1 1 1 158 2L 2382548 2382622 TTTCCTATGAAAGGCTCCC 58 2382744 2382762 TGTAGCAATTCGGATCCTC 59 NA Drosophila melanogaster 50 CG17646 FBgn0031362 FBtr0077886,FBtr0077885 3 2 2 94 2L 1747846 1748777 CTGTGGTCTTGACATTTCC 58 1748834 1748853 GATCAACGAGAGGAAGTAGG 59 NA Drosophila melanogaster 50 CG17646 FBgn0031362 FBtr0077886,FBtr0077885 1 2 2 92 2L 1748860 1749521 GAAATACCCTTCCAGAGCC 59 1749577 1749595 GTAGATCCGGAATGAGTCC 58 NA Drosophila melanogaster 50 CG17660 FBgn0031356 FBtr0077912 3 1 1 82 2L 1708393 1708471 GACTGAGGAGGAATATGGTC 58 1708330 1708349 TATGACGGAAGCGATAACAG 59 NA Drosophila melanogaster 50 chinmo FBgn0086758 FBtr0077879,FBtr0077877,FBtr0077880,FBtr0077878 1 4 4 94 2L 1690675 1690693 GTTTCTCGTCTAACTTGGC 58 1690751 1694237 TTTGAATACTACGCCATCG 57 NA Drosophila melanogaster 50 CG5397 FBgn0031327 FBtr0077920 1 1 1 60 2L 1241601 1241619 ACAGCTTCGAGTACAATGG 59 1241643 1241661 ATTGGTAGACCCTTCAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31976 FBgn0051976 FBtr0078152 3 1 1 60 2L 139079 139097 AACCACCATTAACGAGGAG 59 139037 139055 GGAGTGCTGAAGTATGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41352 FBgn0083994 FBtr0111195 3 1 1 60 X 22319058 22319081 CGATACTAGTAATGTAACCAGAGG 59 22319099 22319118 ACGGGCATTATTTAGACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32500 FBgn0052500 FBtr0077374 2 1 2 102 X 21494389 21494407 GGAGAGCTTGAAGTTCCTG 59 21493238 21494323 CAATTTGGCCAAAGGACTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34120 FBgn0083956 FBtr0110827 1 1 2 80 X 21004971 21005058 GGTGAAGTTTAGTAATGCCTC 58 21005100 21005118 TTGGTGAGAATAGTGGCTG 59 NA Drosophila melanogaster 50 Pp4-19C FBgn0023177 FBtr0077324,FBtr0077325 2 2 2 143 X 20293018 20293100 CAATTACTGCTATCGCTGC 59 20292893 20292911 TAGAGAAAGTAGTCCGCCT 59 NA Drosophila melanogaster 50 CG7378 FBgn0030976 FBtr0113004 3 1 2 150 X 18800155 18801537 CCACTATTATCAGTCGCCC 59 18801651 18801669 ATCACAGTCAACGTCATGG 59 NA Drosophila melanogaster 50 Cyp18a1 FBgn0010383 FBtr0074609,FBtr0074610 2 2 2 272 X 18584261 18584279 TGGTACAGGTGATCATCGA 59 18583571 18584025 CATTGAGTTCCACATCCCT 59 NA DesignNoJunction Drosophila melanogaster 50 RhoGAP16F FBgn0030893 FBtr0074513 2 1 2 80 X 17990420 17990438 GAAATCAAGAGTCCGTTGG 58 17990482 17990562 CAGATCGGTTAACAACCAC 58 NA Drosophila melanogaster 50 Socs16D FBgn0030869 FBtr0074473 1 1 1 81 X 17716884 17716902 GTATGCCAAGTTCAAGTCG 58 17716756 17716839 GAAGAGATATCTGCCGCTC 59 NA Drosophila melanogaster 50 CG32564 FBgn0052564 FBtr0074390 1 1 1 76 X 17101612 17101630 TACAACGGTGGATACAACG 59 17101670 17101688 TTGAATCCACCTGAGAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eo FBgn0030597 FBtr0073975 3 1 1 60 X 14812146 14812164 AGGTCCATAAGACCTACTC 57 14812104 14812122 TTCGGTTGAAGATAGGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10993 FBgn0030524 FBtr0073837 1 1 1 107 X 13684884 13684902 ATATCCAACCTACCCAAGC 58 13684736 13684813 CTTTCTTGACAGCTTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11816 FBgn0030495 FBtr0073785 2 1 1 156 X 13447291 13447455 CGAGGAGTACAAATTGGTG 58 13447153 13447173 GGCAATATAGTACTGTGTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1463 FBgn0030406 FBtr0073657 2 1 1 152 X 12504839 12504857 TCTACGAGGTGTTATCTCC 57 12504651 12504723 TTCCTCGAATTCCTCACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11727 FBgn0030299 FBtr0073546,FBtr0073547 2 2 2 88 X 11331116 11331135 GATCATACTTGGAGGTCTCG 59 11330817 11331066 GGATACGTTATTCTCCTGCA 59 NA Drosophila melanogaster 50 hop FBgn0004864 FBtr0073457 2 1 1 152 X 11256257 11256348 ATTAGATGGTACTCTCCGGA 59 11256124 11256142 ATTGAGGAAATCCTCCTGC 59 NA Drosophila melanogaster 50 Sp1 FBgn0020378 FBtr0112894 3 1 3 98 X 9647339 9647592 TAACATCACAGCTAGTCGC 59 9647654 9647672 GAGGATGACTGTGATCCAG 59 NA Drosophila melanogaster 50 BCL7-like FBgn0026149 FBtr0071358 3 1 1 71 X 9251289 9251604 TCTAACACCTGTTTCTCCG 58 9251639 9251657 CTCAGAGAAGGGCATACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7267 FBgn0030079 FBtr0071354 1 1 1 206 X 8965964 8965982 GTAACTTGTCCCTCCATCC 59 8965706 8965724 TATCGGTATTCAGGAGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 Corp FBgn0030028 FBtr0071179 3 1 1 61 X 8165258 8165276 GCTTGAAGGTTCTCTTCCA 59 8165215 8165233 GTAAGTGTTCGAGGATCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdp FBgn0029958 FBtr0071076 2 1 1 181 X 7627154 7627174 GCTAGTTTCCTCAAGTATGTC 58 7626887 7626905 TCAATGTGAACCAAACAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32741 FBgn0052741 FBtr0070958 1 1 1 158 X 6591539 6591557 TACTTCCGTTTCGTTCTGG 59 6591676 6592136 GTACAACAAGAATCGATTGAGG 59 NA InUTR Drosophila melanogaster 50 CG14443 FBgn0029880 FBtr0070949 2 1 1 60 X 6529428 6529448 GGTTCTGGACAATATTGATCG 58 6529470 6529488 TAGTCGGCAAATGTTACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33668 FBgn0053668 FBtr0091647 1 1 1 78 X 6313337 6313414 TTCTTGACTACTCCGAAGC 59 6313277 6313295 TTCTTAGAACGGGAAAGCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Sirt4 FBgn0029783 FBtr0070852,FBtr0070850,FBtr0070851 2 3 3 60 X 5558825 5558845 CTGGCGGATATCAAGATATCC 59 5558785 5558803 GAAAGTCGAACAGTTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15577 FBgn0040904 FBtr0070660 2 1 1 60 X 4170863 4170882 CTACTGAGGTCCATACTACG 58 4170822 4170840 ACTCTTTGTCACTCATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ilp7 FBgn0044046 FBtr0070577 1 1 1 104 X 3562424 3562442 ATCAAGAAGACAACCACGG 59 3562632 3562650 TATCGATGGAGTGTTTCCA 57 NA DesignNoJunction Drosophila melanogaster 50 CG16781 FBgn0029661 FBtr0070530 3 1 1 106 X 3357842 3357923 TATCATATGGAGATGCGTGG 59 3357755 3357773 CTAGTTGCGAAGCATATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14418 FBgn0040354 FBtr0070565 1 1 1 71 X 2777186 2777204 GATCAGGTGAAGAATGTGC 58 2777133 2777151 CTCAGTAGTAACCTCGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2658 FBgn0024992 FBtr0070503,FBtr0070502 3 2 2 133 X 2590887 2590964 CAGCATGGATTCATTTAACC 57 2590773 2590792 CTACAAATTCCTTCACCTCC 57 NA Drosophila melanogaster 50 gt FBgn0001150 FBtr0070460 3 1 1 268 X 2322755 2322849 TTCGATCTCAAGACTGATCG 59 2322506 2322524 GAAAGATCCAGGACCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11664 FBgn0040341 FBtr0070163 1 1 1 60 X 770170 770188 CCTCTTAACATGTTCGCAC 58 770210 770230 GAGCGATATGCATCAAATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12467 FBgn0025623 FBtr0112912,FBtr0112913 1 2 2 99 X 712955 712973 ACCTAACTGTCGTTTCTGG 59 712816 712892 AGAACACAGTTAGGATCGC 59 NA Drosophila melanogaster 50 CG41578 FBgn0085704 FBtr0114153 1 1 1 60 U 6695536 6695554 AACGTAGTACCTGTACCAC 58 6695578 6695596 GTGTAATCGTGCTAGTGTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41367 FBgn0085633 FBtr0114077 3 1 1 60 U 2759884 2759903 AAACTTCAAAGGTAGTGGTC 57 2759843 2759862 AAGTTGTCCATAGGACAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-3091a FBgn0082979 FBtr0113579 3 1 1 69 3R 1422493 1422511 TGGTACGTAATTGCAAGAG 57 1422442 1422461 TACGTTGTTCAGTGAATGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15561 FBgn0039829 FBtr0085776 3 1 1 71 3R 27040842 27040860 GAAGAAAGACAAGGCTGAG 58 27040789 27040807 ATCTTGACGGGATCTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PH4alphaSG1 FBgn0051014 FBtr0085686 2 1 1 93 3R 26329654 26329672 GTACAATCTGCACAGTTCC 58 26329525 26329597 CCACTCATTGCAAATCCAC 59 NA Drosophila melanogaster 50 CG31371 FBgn0051371 FBtr0085687 3 1 1 158 3R 26327966 26328122 AAATATCCAAGTCCACGGA 58 26327826 26327844 GATCTGAACTGACAGGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 RpL32 FBgn0002626 FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555 1 4 5 81 3R 25871345 25871425 GATATGCTAAGCTGTCGCA 59 25871282 25871300 AGATACTGTCCCTTGAAGC 58 NA DesignNoJunction Drosophila melanogaster 50 Gycalpha99B FBgn0013972 FBtr0085453 3 1 1 168 3R 25509348 25509426 TATCCACAAGCTCAAACTG 57 25509558 25509576 TTCAATGATACCTGTGCAG 57 NA Nonspecific Drosophila melanogaster 50 CG1957 FBgn0027873 FBtr0085358,FBtr0085357 3 2 2 60 3R 24861862 24861882 GGAGATCATCAATCTAGACGA 58 24861904 24861922 AGGTACAAACTCATAGCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9986 FBgn0039589 FBtr0085304 3 1 1 80 3R 24433363 24433381 CAGAGCTGGTGTTTAAGTG 58 24433425 24433502 GTTGCAAGGTGCTTAACTC 59 NA Drosophila melanogaster 50 CG14262 FBgn0039503 FBtr0085177 1 1 1 60 3R 23090697 23090715 CGTACTCCAGATCAATGGG 59 23090655 23090678 GTATATGAACTCCAGGAAGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5880 FBgn0039489 FBtr0085108 3 1 1 175 3R 22943085 22943104 TACGTTATGGCTGTGATCAC 59 22943242 22943320 CAATTGTTGAGCCAAGGAC 59 NA Drosophila melanogaster 50 Lerp FBgn0051072 FBtr0085097,FBtr0085099,FBtr0114572 3 3 3 103 3R 22686815 22686833 CGATTCCTGCACCTATCAG 59 22686665 22686748 AACTCAGATCCAACAGCTC 59 NA Drosophila melanogaster 50 CG6036 FBgn0039421 FBtr0085027 2 1 1 60 3R 22170421 22170441 GTGAATTTATTAGGTCACGGC 59 22170381 22170399 ACGCTGTTAACAATCATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HLHm7 FBgn0002633 FBtr0084960 3 1 1 101 3R 21863207 21863225 TTGGAACCACACTGATGAC 59 21863290 21863308 CACAGACGATACTGAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5890 FBgn0039380 FBtr0084908 3 1 1 124 3R 21693136 21693155 GTTCACCAAACAGGAAATCC 59 21693926 21694183 AACTTGAATTGCCATGTGG 58 NA Nonspecific Drosophila melanogaster 50 CG31110 FBgn0051110 FBtr0084792 3 1 1 80 3R 20869765 20869839 TTCCGGAGTGTAAATGGTC 59 20869703 20869722 TGTTGACTAGATCGATGACG 59 NA Drosophila melanogaster 50 CG31121 FBgn0051121 FBtr0084724,FBtr0084723 3 2 2 106 3R 20708635 20708712 CTATTACTTGGATTTGGTCACC 58 20708550 20708568 CCGAGTTAATCTGATCCCA 58 NA Drosophila melanogaster 50 HdacX FBgn0051119 FBtr0084734 3 1 1 123 3R 20681665 20681739 CAAGCACATTCACAAGCTC 59 20681560 20681580 CAGTGACTTTAGGTATTCCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mask FBgn0043884 FBtr0084563,FBtr0084562 3 2 2 128 3R 20061670 20061760 GGAGATAGATGTGCTACAGG 59 20061851 20061869 GAGATATTGCTGGAACGCT 59 NA Drosophila melanogaster 50 kal-1 FBgn0039155 FBtr0084549 3 1 1 104 3R 19972454 19972535 AAGGAGAAGGTCTATGAACTG 58 19972929 19972947 CTTCAGTTTGCTGAACTCC 58 NA Drosophila melanogaster 50 Atg6 FBgn0010709 FBtr0084590 2 1 1 61 3R 19875163 19875181 AAGATCATCGATCCCTCCA 59 19875066 19875084 TCCTCCGAGTTAAACTGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG10182 FBgn0039091 FBtr0084486 3 1 1 89 3R 19414622 19414701 GAAAGAATCAGGACCAGCT 59 19414551 19414569 AGTTGACCTCTACAATGCG 59 NA Drosophila melanogaster 50 Dph5 FBgn0024558 FBtr0084280 2 1 1 60 3R 18408736 18408754 ATCTGGAGATGTACACCTC 57 18408624 18408714 CCATAGAACTCTTGCATATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AnnIX FBgn0000083 FBtr0089520,FBtr0089518 3 2 4 69 3R 16894704 16894722 AGAACAAGTACGGCAAGAG 59 16896459 16896477 AAGACGTAGCTGTAGTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5630 FBgn0038842 FBtr0113257,FBtr0083979 1 2 2 97 3R 16751961 16752071 CAGCGAGGATTATGATCCA 58 16752132 16752150 TTCCAGTTACTTGCTTTGC 58 NA Drosophila melanogaster 50 CG7671 FBgn0038609 FBtr0083577 2 1 1 123 3R 14192619 14192637 GAAGTGGACCAGATACCTC 58 14192724 14192807 TAAACACGCTGAGATGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7670 FBgn0038608 FBtr0083586 1 1 1 84 3R 14191451 14191469 TAATACGCCAAAGCAAACG 59 14191324 14191403 CTTCTCAGTCACATCTGGA 58 NA Drosophila melanogaster 50 cdm FBgn0038574 FBtr0083619 3 1 1 173 3R 14006605 14006624 AGGAGATCGATGTCCTAGAG 59 14006332 14006409 AGAACATAACAATGGCCGT 59 NA DesignRelaxed Drosophila melanogaster 50 ald FBgn0000063 FBtr0083478 2 1 1 85 3R 13498506 13498526 CAGGGATATCTAAACGAAACC 58 13498573 13498654 CGCACAAGTTGATAATCGT 58 NA Drosophila melanogaster 50 CG18213 FBgn0038470 FBtr0083429 2 1 1 88 3R 12865224 12865309 ATAACCAGAATACGACCGC 59 12865154 12865172 CGAGATTATCGTTCCCTCC 59 NA Drosophila melanogaster 50 sra FBgn0086370 FBtr0083255 2 1 1 76 3R 12022174 12022192 AGTTATTCCGCACATTCAG 57 12022232 12022250 GTCATAGTTAACACGCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5903 FBgn0038400 FBtr0083281 3 1 1 82 3R 11971672 11971690 TACAACTTCATCAAGGGCG 59 11971608 11971627 ATGTACTTAAGGTCCTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31313 FBgn0051313 FBtr0082982 2 1 1 81 3R 10392939 10392957 TTATCCAAGGCTAAGGAGC 58 10392718 10392897 CATTCACTACCTGATAATTGGG 58 NA Drosophila melanogaster 50 CG9307 FBgn0038180 FBtr0082826 2 1 1 119 3R 9594695 9594802 AAACTGAATGTGAACGACG 58 9594885 9594903 GTTCTTGTTCGAGTTGCTC 59 NA Drosophila melanogaster 50 CG34044 FBgn0054044 FBtr0100099 3 1 1 80 3R 9538984 9539049 GGACATTTGCATACCTCAC 58 9538922 9538940 ATCTGGATGTTGCTCTTCC 59 NA Nonspecific Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 2 8 8 284 3R 9504400 9504475 AACACGACGTAAATCAGGA 58 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG9588 FBgn0038166 FBtr0082849 3 1 1 131 3R 9501449 9501531 GAAAGAGCTGGTCTCTGTG 59 9501336 9501354 TTTCAGCTGGACATTCTGG 59 NA Nonspecific Drosophila melanogaster 50 lig3 FBgn0038035 FBtr0082600 2 1 1 80 3R 8224927 8225010 GACCTAGAGAAGCTTAGAACG 59 8224867 8224885 AGTATCGAGACAGCTTTGG 59 NA Drosophila melanogaster 50 Cyp313a5 FBgn0038005 FBtr0082619 2 1 1 92 3R 8059775 8059793 CTTACTCGCGGAATTTGTC 58 8059651 8059719 CCCATAGTAATTTGAGCGG 57 NA Drosophila melanogaster 50 CG31358 FBgn0051358 FBtr0082554 3 1 1 84 3R 7856787 7856805 ACTTTCCCTGGAAATCCAG 59 7856666 7856740 TATCTCCATCAAGTCCACTC 58 NA Drosophila melanogaster 50 CG5270 FBgn0037897 FBtr0082387,FBtr0082388 3 2 2 81 3R 7254514 7254532 AAGTTCTTGGACAAGTGTG 57 7254577 7254656 CTAGTCGAATCTGCTTCAG 57 NA Drosophila melanogaster 50 CG4596 FBgn0037849 FBtr0082289 1 1 1 79 3R 6700299 6700317 ATCCTGACCGACATTTGTG 59 6700360 6700378 TACATGGATAGTTCCTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rlb1 FBgn0014022 FBtr0082062 2 1 1 170 3R 5339111 5339187 GGTGATATCCAACAAGAAGG 57 5339320 5339338 TTTAGAGCCTTCAACTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9740 FBgn0037669 FBtr0081984 1 1 1 60 3R 5083898 5083984 TCCATAGGAAGTCATGTCTC 58 5083857 5083876 ACCTTAATACCGAATTCAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pyd3 FBgn0037513 FBtr0081780 2 1 1 97 3R 3573996 3574015 ATCTTCTTATGTCGCAGCTC 59 3573858 3573876 GACACAGGTTCAGATCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33097 FBgn0053097 FBtr0081735,FBtr0110852 1 2 2 80 3R 2192121 2192140 CGAGGTTATCAAGATACGCA 59 2192000 2192081 GACTTGGAAATCATTCGAACTC 59 NA Drosophila melanogaster 50 Osi12 FBgn0037419 FBtr0078602 2 1 1 60 3R 2104825 2104844 TACTTCTTCAACGGTCACTC 59 2104867 2104885 CAATCTCATCGGATGTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1213 FBgn0037387 FBtr0078643,FBtr0078642,FBtr0078644 1 3 3 64 3R 1671125 1671143 GATGCAGCTCTTCATTGTG 59 1671243 1671261 GGTATGAAACATACGGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 laza FBgn0037163 FBtr0078508 2 1 1 64 3L 22453606 22453625 GATCTGAGCATACGGTATCC 59 22453561 22453579 ATCATGAGCAGTAGCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Csp FBgn0004179 FBtr0078495,FBtr0078493,FBtr0078494 3 3 3 89 3L 22262748 22262766 TTTGGGCTTGTACATAGCC 59 22262819 22262899 ATAACCACCGCCTTTACAG 59 NA Drosophila melanogaster 50 CG7370 FBgn0037133 FBtr0078436 3 1 1 164 3L 21763095 21763113 CACACCTACACTCACTGAC 59 21763337 21763356 ACCAGTATTGTAGTAAGGCA 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Eip78C FBgn0004865 FBtr0078308,FBtr0078307,FBtr0078306 2 3 3 141 3L 21256958 21256979 GCTTATACTAATAAAGCTGGGC 58 21257079 21257157 GACAAAGTCAGAATCGTAGAG 58 NA Drosophila melanogaster 50 gig FBgn0005198 FBtr0074819 3 1 1 98 3L 20131160 20131239 ATACTGCAGGTTACGTTCC 59 20131301 20131319 AAAGTCATTGCCAATGTGG 58 NA Drosophila melanogaster 50 CG6843 FBgn0036827 FBtr0075067 2 1 1 65 3L 18895726 18895744 AGAAGGACAAATCGAGCAG 59 18895773 18895791 ATGAAGAGGAGTCTGAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33051 FBgn0053051 FBtr0075230 1 1 1 102 3L 17419835 17419853 ACCTTGATCACAAGGACTG 59 17419694 17419712 GAGATGTTTAGCTCTTGGG 57 NA DesignNoJunction Drosophila melanogaster 50 Taf4 FBgn0010280 FBtr0075450,FBtr0075449,FBtr0075451,FBtr0075448,FBtr0114589 1 5 5 175 3L 16111339 16111357 GTATGATAACGCCGAATGC 59 16111496 16111621 TATTTGCACAATGTTCGCC 59 NA Drosophila melanogaster 50 CG5235 FBgn0036565 FBtr0075497 3 1 1 72 3L 16082903 16082922 CAATCCTGAAGTTTAAACGC 57 16082795 16082869 TTAAACGTATCAGCGGAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7857 FBgn0026738 FBtr0075605 3 1 1 91 3L 15497253 15497332 AAATGCTCTTCCAGGTCAC 59 15497180 15497201 TCATGTATGAGATAAGCGAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13477 FBgn0036438 FBtr0075685 1 1 1 63 3L 14684761 14684779 CTCGAATTCCATCCGTACC 59 14684806 14684824 ATTGGATTATCGCCTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5048 FBgn0036437 FBtr0075684 2 1 1 195 3L 14678409 14678486 ATGTCTTCTTGCAGATGGG 59 14678645 14678663 CAACGATCAACATTGACGG 59 NA DesignRelaxed Drosophila melanogaster 50 Tsp68C FBgn0043550 FBtr0075751 2 1 2 64 3L 13837014 13837129 TTTGATATGTGGCTTGCTG 58 13837156 13837175 GAATGCGTTTGTTATCGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10627 FBgn0036298 FBtr0075967 2 1 1 268 3L 12521140 12521159 ATCCTAAATCACAAGGGCTG 59 12520822 12520909 TTATCGGTGTCCTCTTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG10418 FBgn0036277 FBtr0075954 2 1 1 82 3L 12329936 12330017 AACGACCTCAGCATATGTG 59 12330061 12330081 GGATCTGTGACACTGATATCC 59 NA Drosophila melanogaster 50 CG32105 FBgn0052105 FBtr0075953 2 1 1 155 3L 12328104 12328122 GATAGCTCCGGTTATTTGG 57 12328315 12328333 CAACTGGTCAAAGTTGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4300 FBgn0036272 FBtr0076009 3 1 2 147 3L 12266715 12268188 ATGACTAGCTCAGATGAGC 58 12266130 12266604 ATTCAGCAATGTTCTGCAG 58 NA Drosophila melanogaster 50 Pi3K68D FBgn0015278 FBtr0076086 1 1 3 129 3L 11779734 11780170 AACGACAATACTGTGTCGA 58 11779623 11779641 CGAAACCCTTTAGATGGTG 58 NA InUTR Drosophila melanogaster 50 CG14132 FBgn0040817 FBtr0113334 1 1 1 75 3L 11705708 11705726 AAGGACTTTATCGTCTCGC 59 11705651 11705669 AAATCACGTTTCAGTTGCG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Ilp3 FBgn0044050 FBtr0076373 1 1 1 78 3L 9794900 9794990 ACCAAGAGAACTTTGGACC 59 9794840 9794858 TCAACAGTCTTTCCAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 defl FBgn0036038 FBtr0076403 2 1 1 60 3L 9718106 9718182 CCCAAGATAAATCCCATGCT 59 9718205 9718223 TAATGGTGTTCAGCTTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RecQ4 FBgn0040290 FBtr0076729 1 1 1 84 3L 8164758 8164838 AAGTACTTGAAGCATGCTG 58 8164692 8164712 CCTCCTTGAATGTCTTATCTC 57 NA Drosophila melanogaster 50 CG8563 FBgn0035777 FBtr0076852 3 1 1 109 3L 7387918 7387936 TCACTGGAACTATCAGGGA 59 7388096 7388114 TGAATTCCAGATACCGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 Glu-RI FBgn0004619 FBtr0076982 3 1 1 144 3L 6626307 6626327 GAAAGAGAACGGGTTATAGAC 57 6626433 6626515 TGAGAATCACGCTTATCCA 58 NA Drosophila melanogaster 50 CG6602 FBgn0035673 FBtr0077047 3 1 1 60 3L 6065538 6065556 AAGCAGGCTATTTACACAG 57 6065579 6065598 GATCGTAAATCTGCTTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bj1 FBgn0002638 FBtr0077075 2 1 3 113 3L 5925538 5925556 TCTAGACAACGTGGAACTC 58 5925355 5925373 ATTAGTCAGGGCCTTTCTG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG10592 FBgn0035619 FBtr0077129 3 1 1 86 3L 5586367 5586385 GTCTATCAACGGCTATCCG 59 5586230 5586248 AAGATGGTAAAGGGAAGCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG14985 FBgn0035482 FBtr0073191 1 1 1 109 3L 4004264 4004282 GATCAAGGGTGACTTGGAG 59 4004526 4004547 GCCCAATCTTAATTATGTAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32487 FBgn0052487 FBtr0073007 1 1 1 60 3L 3016472 3016490 AAAGGGAGTTATTCAGCCG 59 3016363 3016448 GATATCTGTGCACATGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32298 FBgn0052298 FBtr0072897 2 1 1 65 3L 2390410 2390487 AAAGGACCTATCAACAGGC 59 2390363 2390382 ATATCGTGAACAGACCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34259 FBgn0085288 FBtr0112453 1 1 1 60 3L 2027088 2027107 ACAACCTGCTATACAATGAG 57 2027130 2027148 TATACGAACACCTGATGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17129 FBgn0035151 FBtr0072612,FBtr0072614 1 2 3 117 3L 679822 679909 GCAAGAATTTAGCGACCTG 59 679723 679743 CGTTTCAACCATTTAGCTACC 59 NA InUTR Drosophila melanogaster 50 CG7047 FBgn0035103 FBtr0072535,FBtr0072534,FBtr0072536 2 3 3 135 3L 177251 177269 GATAAAGTGCAGAGTGTCC 57 177068 177152 ATACTCGATGGTCTCAGTG 58 NA Drosophila melanogaster 50 CG13581 FBgn0035014 FBtr0072300 2 1 1 65 2R 20394818 20394836 CTGTTATACTGTGACCAGC 57 20394865 20394883 GACAGATGGTACAGGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DnaJ-60 FBgn0020129 FBtr0072278,FBtr0072279 2 2 2 141 2R 20046224 20046242 AACTACGATCCCAATCCAG 58 20046040 20046119 GTTTAAAGGACGACCTGAC 58 NA Drosophila melanogaster 50 l(2)not FBgn0011297 FBtr0072095 1 1 1 71 2R 19593999 19594017 TTTGTTCCTGGACAGAAGG 59 19593946 19593964 ATGTTCATCTTAACGCCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30413 FBgn0050413 FBtr0072040 1 1 1 60 2R 19217355 19217375 GAAGACGTATACTCTAACCCA 58 19217315 19217333 CGTGATCTTGATGTAGGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 robo FBgn0005631 FBtr0071923,FBtr0071922 1 2 2 80 2R 18584836 18584921 GACACTCAAGTCACTATCTCG 59 18584776 18584796 AATACCCTGAGTATTCTCAGC 58 NA Drosophila melanogaster 50 CG10307 FBgn0034655 FBtr0071671 3 1 1 148 2R 17577356 17577432 CTACAGCTAATGGCTTTGC 58 17577544 17577562 TCTAGATCCTGTCCTGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13430 FBgn0034518 FBtr0100496 3 1 2 71 2R 16439277 16439295 AGCAATGAGGTATGCTGAG 59 16439224 16439242 TAATCTGTGGGCGAAACTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11044 FBgn0034484 FBtr0086313 1 1 1 151 2R 16121738 16121758 AATGGTGGACCACTATAAGAG 58 16121871 16122074 CGCGTATGATCAAAGTGTC 58 NA Drosophila melanogaster 50 CG6484 FBgn0034247 FBtr0086903 1 1 1 76 2R 13470792 13470810 CGATATCGATGACGAGCTC 59 13470318 13470752 ACAGAATGTTGACCTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6421 FBgn0025827 FBtr0087043 2 1 1 65 2R 12760235 12760253 ACGATTATGCTCGAATCCA 58 12760282 12760300 GGAAATTGTAGGGCATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34459 FBgn0085488 FBtr0112765 1 1 1 68 2R 12713684 12713702 GATGGTCGATCAACTGGAG 59 12713734 12713752 ATCGAATTGGACTCCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30100 FBgn0050100 FBtr0087140 2 1 1 70 2R 12179414 12179432 AGTCGGATATCGAGGAGAC 59 12179465 12179484 GTTGGATGTCTTGTTGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Khc FBgn0001308 FBtr0087184 2 1 1 88 2R 12157151 12157307 CTGTGACAAACATGAACGA 58 12157081 12157099 TTTCTTCTGGTTCTCCAGG 58 NA Drosophila melanogaster 50 krimp FBgn0034098 FBtr0087189 3 1 1 60 2R 12127277 12127295 AACCGATTCCTATTGCCTC 59 12127235 12127255 GATTGTAGATATCACGTCTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30094 FBgn0050094 FBtr0087233 2 1 1 78 2R 12030038 12030057 GATAACCTCTGCGACTATCC 59 12030098 12030116 ATCTCTTCTTGCAATGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp50b FBgn0050073 FBtr0087552 2 1 1 90 2R 10258866 10258884 AGTTGGTCTACTGTTGTGG 59 10258938 10259010 CAAGGACCATAGTCATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34379 FBgn0085408 FBtr0112616,FBtr0112614,FBtr0112615 2 3 3 194 2R 10238350 10238431 ATGGATGAGCTCATCAAGC 59 10238588 10238607 TAAACTGGTTATGTTGCCCA 59 NA DesignNoJunction Drosophila melanogaster 50 SelD FBgn0020615 FBtr0087564,FBtr0087565 3 2 2 60 2R 10157196 10157216 GTACCAAGATGACAGAGAAGG 59 10157156 10157175 TTAAAGCCTCGCATTATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8485 FBgn0033915 FBtr0087572,FBtr0087570,FBtr0087571,FBtr0087569 1 4 4 90 2R 10126046 10126142 GTTCACAGGGATCTAAAGC 57 10125974 10125992 AGAACTTGTTGCTAAACCC 57 NA Drosophila melanogaster 50 CG13332 FBgn0033851 FBtr0087674 2 1 1 61 2R 9413142 9413160 CATCCAGAAGCAAATCTGG 58 9413185 9413203 CATTTAGCTGACGTTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4646 FBgn0033810 FBtr0087764 2 1 1 93 2R 9107489 9107507 CATGAAGTGCAAGATGTGC 59 9107355 9107373 CTTAAATGCGCCAGAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Psc FBgn0005624 FBtr0087798 3 1 1 174 2R 8858020 8862016 AACATCAAATCGGACACCA 59 8857864 8857882 CCGAGGGACTAAAGATCAG 58 NA DesignRelaxed Drosophila melanogaster 50 spt4 FBgn0028683 FBtr0087840 2 1 1 75 2R 8521468 8521552 AGATTGTCCCGCTTTACTC 59 8521591 8521609 TGTCACGTAAGGTAGACTG 58 NA DesignNoJunction Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0087931,FBtr0087929,FBtr0087930 1 3 6 61 2R 8337239 8337257 CAGATTAGCAGCGATATGC 58 8337282 8339492 TATTCGCATTTGCTTGCAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 128up FBgn0010339 FBtr0087976 2 1 1 106 2R 7926105 7926189 GGAATTTAAATATGCGCTGG 57 7926258 7926276 TCTTCACAATCTGGACCAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Drip FBgn0015872 FBtr0088141,FBtr0088142 2 2 2 75 2R 7300182 7300200 GGATATCAAGGGATCAGCG 59 7300068 7300143 GCTCAGTTTGATTGCACAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 cdc2rk FBgn0013435 FBtr0088430,FBtr0088429 3 2 2 218 2R 5955042 5955060 CACATGATTGGCCAATCAG 59 5954777 5954797 TAAATCCGAGATGGGAATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 cdc2rk FBgn0013435 FBtr0088430,FBtr0088429 1 2 2 216 2R 5955042 5955060 CACATGATTGGCCAATCAG 59 5954779 5954797 AATCCGAGATGGGAATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30002 FBgn0050002 FBtr0088466 1 1 1 154 2R 5592562 5592655 CTTTAAAGATCACATACGACCC 58 5592768 5592788 CAGTTCTTATATCCACCTCCA 58 NA Drosophila melanogaster 50 Mmp2 FBgn0033438 FBtr0088500 2 1 2 139 2R 5545211 5545229 TGACATGAAAGAGTCACGA 58 5530973 5545110 GATACATACCCATCAAGAAGG 57 NA Drosophila melanogaster 50 Cyp4p3 FBgn0033397 FBtr0088593 3 1 1 135 2R 5130632 5130709 AATAGCATTTGTGAGACGG 57 5130808 5130826 TATCGCTCCATAGAAGTGG 58 NA Drosophila melanogaster 50 CG8642 FBgn0033312 FBtr0088729 2 1 1 62 2R 4501123 4501141 TCTACTGATCGAGCATCTC 57 4501079 4501097 TTCTTCTCCCGAAACTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30362 FBgn0050362 FBtr0088769 1 1 1 60 2R 4253173 4253191 CATTGCTTCTGCATCAACC 59 4253131 4253151 TCTTCATGCGGTAATAGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Optix FBgn0025360 FBtr0088865 3 1 2 253 2R 3919743 3920822 ACTTCAGGGAACTTTATGCA 59 3921905 3921923 ATCCTGTAGGTACCATTCG 58 NA DesignNoJunction Drosophila melanogaster 50 Tsp42Ee FBgn0029506 FBtr0086180 2 1 1 81 2R 2905066 2905085 GTCGAATTAATGACCACTGG 58 2905129 2905210 AGATAAAGCCGATCAGCTC 59 NA Drosophila melanogaster 50 CG17002 FBgn0033122 FBtr0086170 3 1 1 183 2R 2875602 2875620 GACTATGGAGAAGCTACCG 58 2875767 2876090 ATTCTGTGGAGGAAACTGG 59 NA Nonspecific Drosophila melanogaster 50 CG3420 FBgn0033100 FBtr0086135 3 1 1 188 2R 2644445 2644464 GATACTAAGACGGAACCTGG 59 2644138 2644232 TTATCTTTGTCCAGGTGGA 57 NA DesignNoJunction Drosophila melanogaster 50 Adf1 FBgn0000054 FBtr0086111,FBtr0086113,FBtr0086112 1 3 3 144 2R 2554511 2554588 TCCGCATGAAATTACTGTC 57 2554696 2554714 AATCTTGATGGTGTTGAGC 58 NA Drosophila melanogaster 50 CG7843 FBgn0033062 FBtr0086021,FBtr0086020,FBtr0086018 3 3 3 212 2R 1969490 1969508 TATCTACGCGATCCTAAGC 58 1968905 1969243 TTCCAAAGGCAATTCTCTG 57 NA DesignRelaxed Drosophila melanogaster 50 CG11665 FBgn0033028 FBtr0086072 3 1 1 102 2R 1531219 1531335 TTATAGTTCATTGGGCCCG 59 1531135 1531154 GAGTATCATACCCAGTGACG 59 NA Drosophila melanogaster 50 TpnC41C FBgn0013348 FBtr0086102 3 1 1 86 2R 954422 954494 GAGCAAACTGCATTACTACG 59 954355 954373 TATCGTACCCACCATAGCT 59 NA Drosophila melanogaster 50 snmRNA:158 FBgn0065104 FBtr0091750 2 1 1 60 2L 5206232 5206251 CAAGAAGGATCACTCTACCC 59 5206274 5206292 TATCCCATCTAACCCTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6448 FBgn0032976 FBtr0113044,FBtr0085939,FBtr0113046,FBtr0085938 3 4 5 86 2L 22140896 22140914 GAGCATTTAGATCTTGCCG 58 22140962 22141605 GTAAACAGCATCTTGATCCTG 59 NA Drosophila melanogaster 50 CG31693 FBgn0051693 FBtr0100262,FBtr0085931 3 2 2 60 2L 22015690 22015709 TGTCGAGAAACTTCATGGTC 59 22015732 22015750 AGCGAGATAACTGCTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33864 FBgn0053864 FBtr0091868 1 1 1 69 2L 21536679 21536697 AATTTAAAGGAACGTGGCG 59 21536729 21536748 CGCATTTATAAGTGGCAGTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17567 FBgn0040994 FBtr0081231,FBtr0081229 1 2 4 190 2L 19183448 19183516 CAAATTCCACTTAGCTGCC 59 19183223 19183241 AATGAGCACTGGATGTAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15253 FBgn0028948 FBtr0080782 3 1 1 94 2L 15616050 15616123 GATGAAGAACATCGTAACCAC 59 15615976 15615994 TACTTCTGATCAGTGGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31832 FBgn0051832 FBtr0080726 3 1 1 60 2L 15031307 15031326 TATACAAACTGGAACGGGTG 59 15031266 15031284 TGGTATCTTAGGGAGTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab14 FBgn0015791 FBtr0080627,FBtr0080628,FBtr0080626 1 3 3 267 2L 14357453 14357536 ATTCATGGCCAATTGTCCT 59 14357819 14357839 GTTGCCAATGAGAAAGATCAC 59 NA DesignNoJunction Drosophila melanogaster 50 Rab14 FBgn0015791 FBtr0080627,FBtr0080626 2 2 3 147 2L 14357443 14357526 CCGAGAAGAAATTCATGGC 58 14357637 14357655 TAATAGGAGCGTGTCACTG 58 NA Drosophila melanogaster 50 Nnp-1 FBgn0022069 FBtr0080473 2 1 1 60 2L 13364620 13364638 AGCAGAACAAAGATGACCA 59 13364578 13364596 TCATTCTTCGGCTTAAGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5075 FBgn0032464 FBtr0080421 1 1 1 60 2L 12979419 12979437 GGTGAGATCATTCGACTGG 59 12979460 12979479 CCGAAGTATCCTCGTAAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vir-1 FBgn0043841 FBtr0080391,FBtr0080390,FBtr0080389 2 3 4 105 2L 12407725 12409464 CCTTCGATGATCTCTTCCG 59 12407638 12407657 CTAGAATCATCAGAGTCGCC 59 NA Drosophila melanogaster 50 Mt2 FBgn0028707 FBtr0080329,FBtr0110911 2 2 2 60 2L 12097161 12097181 GAAAGATCTGGGAAGAAATGC 59 12097202 12097221 GCAATTTGTGAAAGACCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Csl4 FBgn0032346 FBtr0080226 1 1 1 153 2L 11123436 11123454 ATGAGACTGTAGTCTGCCT 59 11123247 11123319 ACCACCTGGCATTTATCAC 59 NA Drosophila melanogaster 50 porin FBgn0004363 FBtr0080183,FBtr0080182 1 2 3 82 2L 10848458 10848551 CAGTCTGGAAACAAGAACG 58 10848394 10848413 AGATCAATGTTCACATCCGA 59 NA Drosophila melanogaster 50 ppk10 FBgn0065110 FBtr0100097 3 1 1 82 2L 10451065 10451084 CTGATTATGCCTACGATGGT 59 10450940 10451020 CGTGGTATCTTGCTCTAGG 59 NA Drosophila melanogaster 50 CG5188 FBgn0032247 FBtr0080024 2 1 1 61 2L 10429600 10429620 CTTTCATTGGACATGGAATCG 59 10429640 10429716 ATAATAGTGTAGTATCTCCGGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13088 FBgn0032047 FBtr0079681 2 1 1 80 2L 8490118 8490136 AAGTTCTGCTAAGTCGCAG 59 8490177 8490253 AATCCCGTAGAACTTTACTAGG 59 NA Drosophila melanogaster 50 CG15818 FBgn0031910 FBtr0079442 3 1 1 60 2L 7411340 7411359 TGAAAGATGGACAGAAGAGG 59 7411382 7411400 TCGGATAGAGTCTTCTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13773 FBgn0042092 FBtr0079372 2 1 1 185 2L 6907125 6907241 AGCTCCAAAGAACAAATCC 57 6906958 6906976 GTCTTTGTAGTGTCACCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34126 FBgn0083962 FBtr0110840 1 1 1 80 2L 4991012 4991030 CAGATGAAGCTAGACAACG 57 4991071 4991154 GGTCTTGTGCCTATAATTATCC 58 NA Drosophila melanogaster 50 fred FBgn0051774 FBtr0077508 1 1 1 80 2L 3929494 3929784 CAATGATAACCTGGTACCGA 59 3929433 3929452 TATAGTGGTTCTTCGATCCG 58 NA Drosophila melanogaster 50 Or22c FBgn0026396 FBtr0077826 2 1 1 88 2L 2055777 2057042 CATCATGTTGAACACGTCG 59 2057093 2057112 CGAAGCAGTAGAGGAATAGC 59 NA Drosophila melanogaster 50 CG14341 FBgn0031315 FBtr0077964 2 1 2 68 2L 1166860 1166878 GTCTGGAGTGAACCAAGAC 59 1166909 1166988 GAGTATCTGTTCCGTTCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12788 FBgn0031041 FBtr0100291 2 1 1 60 X 19511430 19511449 TTCGGACAGATATACATGGC 59 19511389 19511407 TCCTAAGTGAGTTTGCCTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9699 FBgn0030772 FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369 2 6 7 80 X 16588098 16588116 CATTGAGGCGGTTAAATGC 59 16580763 16580781 CCTATGTAATCGCGATCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG9938 FBgn0030500 FBtr0073850 2 1 1 186 X 13505495 13505514 ATTGCGGATCTATTCAGTCG 59 13505260 13505346 GCCATGATTTGTTCACCTG 59 NA Drosophila melanogaster 50 CG32686 FBgn0052686 FBtr0071468,FBtr0071467,FBtr0113446 1 3 3 60 X 10267481 10267499 CAACCAAACTCATCTACGA 57 10267439 10267460 CGTCTAAATAAGGATTCGTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sp1 FBgn0020378 FBtr0071381,FBtr0112894,FBtr0071380 2 3 3 61 X 9648300 9648318 GAACATCCATTCGTGTCAC 58 9648343 9648361 TCAGATGTGACGTCTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16782 FBgn0029659 FBtr0070531 1 1 1 60 X 3353767 3353786 TTTCTGTCATGGACTCTTCG 59 3353726 3353745 TTTCTTGGCATTATCATCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070509,FBtr0070510 3 2 14 163 X 3140216 3140333 GAGTATATTGCCGGTACCT 58 3140460 3140478 AAAGTCTCGTTCGAATTGC 58 NA Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 1 8 8 80 4 671649 672942 CTAACAGCACAGATTGATGG 58 671588 671606 CAAATACGGGTGAAAGCTG 59 NA Drosophila melanogaster 50 CycG FBgn0039858 FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799 3 5 5 97 3R 27426466 27426484 ACTTCCACATCAAGGAGTC 58 27426317 27426407 ATCAGGAATCCTCATGTACTG 58 NA Drosophila melanogaster 50 CG2267 FBgn0039792 FBtr0085672 1 1 1 60 3R 26453869 26453889 CCAAGTCACAGTTTACTTTGC 59 26453829 26453847 TGCTCGATACCTTGTACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12428 FBgn0039543 FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236 1 5 5 80 3R 23531106 23531201 GGAGTACATGCTGAAGAGTC 59 23531045 23531065 TTGATGCTGGACTTTCTAGTC 59 NA Drosophila melanogaster 50 CG3330 FBgn0039511 FBtr0085170 1 1 1 60 3R 23156320 23156339 TAAATCTGCAGAATAAGCCC 57 23156279 23156297 GTGGTCTTCTCCATTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scrib FBgn0026178 FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085019 2 5 7 88 3R 22406736 22415639 CAACTACAGTCAACACCTG 57 22415691 22415709 TTAGGCACTTTAGTCGGAG 58 NA Drosophila melanogaster 50 jigr1 FBgn0039350 FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887 2 6 6 95 3R 21474753 21474771 GATAGGTCAAACAAGCGGT 59 21474830 21474920 CCTTATACTGGTGGCATCG 59 NA Drosophila melanogaster 50 CG7048 FBgn0038976 FBtr0084257 1 1 1 148 3R 18313401 18313419 GGTTCGTCATAGACATCGG 59 18313592 18313610 TGAGTTATAGAAGCGCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32855 FBgn0052855 FBtr0083234 3 1 1 63 3R 11905851 11905869 ATCTGTGTTGCTACTACGC 59 11905806 11905824 GCTAAGATCACTCAGGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14683 FBgn0037822 FBtr0100412,FBtr0082267 2 2 2 60 3R 6523603 6523623 GACTCCTAAACCCTACTAGAC 58 6523644 6523663 GTCACATCTATAGAGCTTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hth FBgn0001235 FBtr0082254,FBtr0082255,FBtr0082253,FBtr0082256 3 4 6 132 3R 6340056 6346801 ATTTAACGCATCCCTACCC 59 6337492 6337511 GATTGATCGATCATTGGCTG 59 NA Drosophila melanogaster 50 CG8379 FBgn0037638 FBtr0081922,FBtr0081921 3 2 2 102 3R 4651044 4651062 TATCCTGGTCAACTATCGC 58 4651128 4651370 TATCATTTGGCCATAGCCA 58 NA Drosophila melanogaster 50 CG9601 FBgn0037578 FBtr0081854 2 1 1 60 3R 4167774 4167794 GAAGCACAATATAGCTTTCCG 59 4167734 4167752 CATGTCCTTGATCTTGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL1 FBgn0037566 FBtr0081832 2 1 1 82 3R 4127781 4127858 AGGGAAATAATGAAGTCCTGG 59 4127899 4127920 GCTGGTAATATCCTTAATGAGC 58 NA Drosophila melanogaster 50 CG1124 FBgn0037290 FBtr0078841 3 1 1 149 3R 792947 793347 TTCCTGATATTCAGCTGCC 59 793460 793478 TCAGTTTCAGGGATGTCAC 59 NA Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 3 8 8 172 3L 16956749 16956767 ACGTCAAGTACAAGGACTG 59 16956901 16956979 CAATAGACCCTTGTGAATCAC 58 NA Drosophila melanogaster 50 CG9701 FBgn0036659 FBtr0075321 2 1 1 87 3L 16731143 16731161 CTTTAATCACGACATGGGC 58 16731212 16731822 CTTGGGATAGACCTTGAGC 59 NA Drosophila melanogaster 50 Tollo FBgn0029114 FBtr0075607 2 1 1 60 3L 15230951 15230970 CAATAGGATCACTCAGTTGG 57 15230993 15231011 GGTACTCAGACTCAGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34032 FBgn0054032 FBtr0100087 3 1 1 62 3L 12883540 12883558 ACAATGTGGAACCTATCCG 59 12883652 12883670 GTGTCGATGATGAAATCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3552 FBgn0035999 FBtr0076464,FBtr0076463,FBtr0114371 1 3 3 86 3L 9452140 9452160 CGAGTACTGTGTAAACAAGGA 59 9452208 9452292 TTATCAGCATCTGGCAAGG 59 NA Drosophila melanogaster 50 Tequila FBgn0023479 FBtr0076526 3 1 4 94 3L 9078323 9078341 GTATTTGCCAGCCTAAGAC 58 9078396 9078481 GGCAGATAGTATCATAGTTTGG 58 NA Drosophila melanogaster 50 CG6416 FBgn0035917 FBtr0089568,FBtr0089561,FBtr0089563 1 3 8 86 3L 8620819 8627689 ATTGTGAATCAGCCCTACC 59 8627739 8627757 CAAGTAGGACTCTGTCGTG 59 NA Drosophila melanogaster 50 CG2812 FBgn0034931 FBtr0072140 3 1 1 126 2R 19813621 19813639 ATCTACATCACAGACTGCG 59 19813729 19813812 GTATCGTTTGATCCTGCGA 59 NA Drosophila melanogaster 50 CG34197 FBgn0085226 FBtr0112390 1 1 1 60 2R 15289466 15289486 ACTTCAGAGGAACTATCAGAG 58 15289426 15289445 CACCTTCATCAATTAACCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33958 FBgn0053958 FBtr0114576,FBtr0099994 3 2 2 80 2R 14074502 14074521 TCCATTAATCGTGGATTGCT 59 14074345 14074459 AACTAGGTATCGCCATACG 58 NA Drosophila melanogaster 50 Rho1 FBgn0014020 FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216 2 7 7 82 2R 11993293 11993373 CACAATTCGGGATCTAGCA 59 11993419 11993437 AGGCATTAATCTTCTCGGC 59 NA Drosophila melanogaster 50 CG7220 FBgn0033544 FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217 3 5 5 110 2R 6624695 6624713 CCATGTTGAGTAGTTGTCG 58 6624787 6624870 CAGAATCATCGTGGTACCA 59 NA Drosophila melanogaster 50 gem FBgn0050011 FBtr0089758,FBtr0089759 3 2 2 97 2R 6023162 6023250 TGACATGGACGATTATAGCC 59 6023310 6023328 TTGAAAGATAGGCCGTGAG 59 NA Drosophila melanogaster 50 CG34141 FBgn0083977 FBtr0110980 1 1 1 127 2R 5150165 5150183 AACAGAACAGGATGTCGAC 59 5149998 5150016 GTTTGTTAAGAGCCCTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995 1 9 9 157 2R 3355133 3355208 AGAAGTTGTCATCAGCTCG 59 3354994 3355012 GTAGTAGTTGGTCAGCACC 59 NA Nonspecific Drosophila melanogaster 50 CG3358 FBgn0033117 FBtr0086166,FBtr0114532 2 2 2 63 2R 2811957 2811975 CTAATAGACGGACGCTGTG 59 2812068 2812086 TGATTCCGGCAATAGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 Pld FBgn0033075 FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997 2 6 6 80 2R 2141752 2142360 ACATTCAGGGTTACTTGGT 58 2142404 2142422 CCTCCTTACTAGTTCCAGG 58 NA Drosophila melanogaster 50 TpnC4 FBgn0033027 FBtr0086075 2 1 1 83 2R 1394209 1394279 GGAACAATTGAGAATCCTTAGG 58 1394147 1394167 CTAGATACATCAGCATGTTCG 58 NA Drosophila melanogaster 50 CG17082 FBgn0039994 FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289 1 6 6 87 2R 637011 642015 TTGAACAAGGGTTAGAGGT 58 642066 642084 AGTTGTACAATCGCTTCAG 57 NA Drosophila melanogaster 50 wor FBgn0001983 FBtr0080740 3 1 1 60 2L 15424609 15424627 GAGGATCAGGAGAATCAGG 58 15424567 15424585 AGTACAGATCATTGCTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5945 FBgn0032494 FBtr0080450 1 1 1 60 2L 13240879 13240897 GCAAACGGAATATTTGCAG 57 13241513 13241533 ACTGATTAGCCACATTCAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Ca-beta FBgn0015608 FBtr0080218,FBtr0080217,FBtr0080220,FBtr0080219 1 4 4 60 2L 11165752 11165771 GCTAAGCTAGACAACATTCG 58 11165645 11165664 TTGTGCCATACAGTCTTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17292 FBgn0032029 FBtr0079648 1 1 2 102 2L 8372615 8372694 AAACAAATCCAGGCTCCTC 59 8372887 8372905 GATATCGCTATCTGCCACC 59 NA Drosophila melanogaster 50 Gr28b FBgn0045495 FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458 3 5 5 118 2L 7455130 7455212 TTGTATTTCACGATCAGCG 58 7455030 7455049 TTATTGAAGGTCTCACAGCA 58 NA Drosophila melanogaster 50 CG15423 FBgn0031580 FBtr0077506 1 1 1 60 2L 4006165 4006183 GAAGGCCAATTGTAGAGGT 59 4006207 4006225 ATCTCAATCACTGGTCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eno FBgn0000579 FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905 2 4 5 84 2L 1727657 1727676 TTAAATTTGTGCAGATCCGC 59 1726602 1726620 GAGTCGTAGATTTGACGGG 59 NA DesignNoJunction Drosophila melanogaster 50 Myb FBgn0002914 FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169,FBtr0074173 3 5 5 88 X 15749880 15749899 AACCAAGGTCTATAATCGCG 59 15749747 15749829 GTCCAAGTTGACTCTTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7065 FBgn0030091 FBtr0071299 2 1 1 115 X 9038971 9040049 ACCTTCAAAGGTACCAACG 59 9040128 9040146 AAAGCATTGGCCAATTTGG 59 NA Drosophila melanogaster 50 Hexo2 FBgn0041629 FBtr0071249 2 1 1 192 X 8605964 8605982 CTACCGACTGATTGTGTCC 59 8606138 8606226 GATTCGGGATTCCAGTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CBP FBgn0026144 FBtr0071053,FBtr0071052 1 2 2 117 X 7235527 7235615 CTTGTTTAAGGCTGTGGAC 58 7235696 7235714 TATCACAGCGAATGAAACG 58 NA Drosophila melanogaster 50 SK FBgn0029761 FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070765,FBtr0070767,FBtr0070769,FBtr0070766 1 7 7 80 X 5270149 5270167 ACAGATCTCATCTGGATGC 58 5270207 5272346 TCTTCCATATACCTAGGGTAGTC 59 NA Drosophila melanogaster 50 CG15912 FBgn0029712 FBtr0070677 3 1 1 60 X 4443599 4443618 TTCATTCTGACTTCCTACGA 58 4443641 4443659 GAATTTCGAAGATACCGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14810 FBgn0029589 FBtr0070374 3 1 1 79 X 1714144 1714224 TCCATTTCGAAGAACAAGAG 57 1714084 1714102 TTCATCCCATTGGACTTGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG32813 FBgn0052813 FBtr0070224 2 1 6 181 X 1285417 1285435 AAATCGAATACTGGCAGAC 57 1285658 1285676 TATCGAGATGATGTCGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14632 FBgn0029538 FBtr0070192 1 1 2 67 X 787287 787305 CACAGGTCCAAGAATCAGG 59 786652 787256 CACGAGAATAGCGTTTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG41587 FBgn0085711 FBtr0114160 1 1 1 60 U 7489897 7489915 ACAGTTGAGTGAAGTGACC 59 7489939 7489957 TCTGTTAGCGGTTAACTGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Fer2LCH FBgn0015221 FBtr0085622,FBtr0085623 2 2 3 93 3R 26214617 26214931 CACTGGAATAAACCGTCGA 59 26214986 26215006 CAATATTCATCATCCTTGGCC 59 NA InUTR Drosophila melanogaster 50 CG5246 FBgn0038484 FBtr0083405 1 1 1 60 3R 12962263 12962281 TCGAAGATCCATTGCAGTC 59 12962305 12962323 TGTGGATCAACGCTATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ea FBgn0000533 FBtr0083083 3 1 1 113 3R 11155236 11155254 GAAGACCAAGATCGACGAG 59 11155393 11155413 GTGATCACATATCTTGTGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9492 FBgn0037726 FBtr0082100 2 1 1 80 3R 5496612 5496630 CTACTCCAATCGCATTCTC 57 5496462 5496568 CAGATTTCATCGTCTGCTG 58 NA Drosophila melanogaster 50 CG18268 FBgn0037520 FBtr0081772 2 1 1 106 3R 3628930 3629011 TTAATATGGCTCTTAGCCAGAG 59 3628845 3628863 TTCACAATGTTTGCTCAGC 59 NA Drosophila melanogaster 50 rn FBgn0003263 FBtr0081593 1 1 2 150 3R 3121508 3121526 ATGCCAAAGACATAAGCGA 59 3118151 3120142 AGAAAGTGACCTTTCTGCA 59 NA Drosophila melanogaster 50 CG13247 FBgn0036979 FBtr0078184 1 1 1 164 3L 20364376 20364463 CTTTAAAGGCAAGTCCCTG 58 20364591 20364609 GTCCACTTAGTGTTCTGGA 58 NA Drosophila melanogaster 50 CG6597 FBgn0036967 FBtr0074838,FBtr0074837 3 2 2 99 3L 20296362 20296381 TACTATTAGCGACAACATGG 57 20296443 20300946 CAATCTGATATGGCGTCTG 58 NA Drosophila melanogaster 50 CG17286 FBgn0027500 FBtr0075363 3 1 1 149 3L 16587092 16587171 GTGTCCAATTCTGTCTTGG 58 16586961 16586979 CACGTTACTTTCTGGTTCC 58 NA Drosophila melanogaster 50 CG30125 FBgn0050125 FBtr0086595 3 1 1 84 2R 14982919 14983033 TTTGGTACAACTCATCGGA 58 14982853 14982872 TTTATGATAATCAGCCCGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30088 FBgn0050088 FBtr0087280 2 1 1 139 2R 11579092 11579110 CAGGGTGGATCTTGTTCTC 59 11579212 11579292 TGTATGTGCACATTAAAGCG 59 NA Drosophila melanogaster 50 CG4670 FBgn0033814 FBtr0087760 2 1 1 60 2R 9121659 9121680 CAAATTCAAGATTGATCCGACC 59 9121620 9121638 AATTTCACCTTTGCGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30378 FBgn0050378 FBtr0088854 1 1 1 60 2R 3838350 3838368 GAGAAGATGTCCGAAGAGG 59 3838389 3838410 CATCTTTGTCCTGATCAATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp9b2 FBgn0015039 FBtr0089055 2 1 1 116 2R 3018193 3018211 GGAACCCAGAAAGTTTGAC 58 3018035 3018114 GCATATCGATTTCCTATGCA 57 NA Drosophila melanogaster 50 debcl FBgn0029131 FBtr0086108 2 1 1 283 2R 2537066 2539495 ATGGATATCATCAACCAGGG 58 2539796 2539814 ACTAGGTTGAGCAACATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CR31808 FBgn0062978 FBtr0080943 1 1 1 102 2L 16715854 16715872 TTTCTAGAGCGTTTCGGTC 59 16705789 16715788 GCGTAATATGCAAGTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34163 FBgn0085192 FBtr0112354 2 1 1 62 2L 11988516 11988534 CTGAAATCGGGTGTATCCT 58 11988559 11988578 GTTGAGTCGTTCGATTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 abo FBgn0000018 FBtr0080168 1 1 1 60 2L 10974630 10974648 TCGTATGTGTTCTTTCTGG 57 10974588 10974607 GCAGGATAAGTCTATCTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7329 FBgn0032271 FBtr0080131 2 1 1 121 2L 10630060 10630137 ATATGACCATGTTCCCTGTG 59 10629958 10629978 CTTGGATTCGTAATCGTACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13134 FBgn0032182 FBtr0079968 1 1 1 174 2L 10097806 10097824 AATTTCCATCACTTCGACG 58 10096921 10096939 ATTTGCTGGCATTAACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 mir-iab-4-5p FBgn0082170 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:V3b:92Bb FBgn0012004 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:MeU2-A31 FBgn0086076 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Akh FBgn0004552 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-3 FBgn0046822 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30198 FBgn0050198 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CR33963 FBgn0053963 FBtr0100004 1 1 1 60 X 12553619 12553640 CTTGTTTCTCGTGTATCTTGTG 59 12553660 12553679 GAATGTAAGTTGACCACTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41478 FBgn0084038 FBtr0111180 1 1 1 194 X 22077362 22077380 ATAGTATGCATAGCGACGC 59 22075317 22076939 TAAATGCAAATCTGGGCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG14617 FBgn0031191 FBtr0100652,FBtr0100651,FBtr0077352 3 3 5 129 X 21887458 21887783 GATTGCTTCAACAGCTCTG 59 21887874 21887894 TGTTTGAGGAGTAGTTTGGTC 59 NA InUTR Drosophila melanogaster 50 DIP1 FBgn0024807 FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370 3 4 4 170 X 21497272 21497350 TTCTTTGCATTATGCGTCC 58 21497120 21497138 GAGAGTTGCACACTTTCAC 58 NA Nonspecific Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210 3 5 8 87 X 21247686 21250626 ACATGACGCTTATGAAATGG 58 21250676 21250694 ACAAAGTGGCCATAGAAGG 59 NA Drosophila melanogaster 50 unc FBgn0003950 FBtr0077259 2 1 1 148 X 20983986 20984067 ATAGAAACCAAGCTCCTGC 59 20983856 20983874 TTGAGGTACCGTTTCATCG 59 NA DesignRelaxed Drosophila melanogaster 50 D2R FBgn0053517 FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461 1 4 5 80 X 19905587 19920746 TACTTTCTGGTAAATGGAGC 57 19905526 19905545 AGTAGAGCATATCACATCCA 57 NA Drosophila melanogaster 50 Mer FBgn0086384 FBtr0074754 1 1 1 109 X 19586340 19586359 ACGGAGTAAACTACTTTCCT 57 19586191 19586209 CTTTGGCGTTAGCTTATCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14215 FBgn0031052 FBtr0074746 1 1 1 81 X 19548336 19548490 CCACATTCTCTAAGATTGCC 58 19548534 19548552 CAGTCGTTAAGCAAAGCTC 59 NA Drosophila melanogaster 50 CG14211 FBgn0031044 FBtr0074741 2 1 1 82 X 19518476 19518495 AAACTTTAGCTGGATCAACG 58 19518605 19518623 CCACCTTGGAAGGTATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14200 FBgn0031023 FBtr0074721 3 1 1 94 X 19404261 19404279 TTTATCCCTTCGAATGCGA 59 19405171 19405189 GTCCTCTGAGAACTTGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7326 FBgn0030970 FBtr0074653 2 1 1 60 X 18756516 18756536 TATGAGAACGAGGATCAACAC 59 18756476 18756495 TTTGATCCGTAAACACATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074571 3 1 6 100 X 18286942 18298034 CGAGAACTTGGTCACAGAG 59 18286786 18286878 GACTTGTACTCTGCCAAGG 59 NA Drosophila melanogaster 50 CrebB-17A FBgn0014467 FBtr0074555,FBtr0074556,FBtr0074554,FBtr0112878 2 4 7 202 X 18269409 18269883 CTACAACACCAACAACAGC 59 18270049 18270067 GACAGTAGAGCTCCTTGAG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG8661 FBgn0030837 FBtr0074444 2 1 1 60 X 17178268 17178288 AAATCCCTAAAGATCGCTCTG 59 17178228 17178246 CCACCCACTTGATTATGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ppk28 FBgn0030795 FBtr0100474,FBtr0074335 3 2 2 83 X 16701917 16701936 GCACTTCTACTACATGACCA 59 16701980 16702063 CCCGTATTAGACAAGAATTCG 58 NA Drosophila melanogaster 50 eas FBgn0000536 FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211 3 5 5 113 X 16178691 16178711 CTCTATGTCCAGGTCAATCAG 59 16178784 16179064 AAATGCATAGCCTACGTAGTC 59 NA Drosophila melanogaster 50 eas FBgn0000536 FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211 3 5 5 113 X 16178691 16178711 CTCTATGTCCAGGTCAATCAG 59 16178784 16179064 AAATGCATAGCCTACGTAGTC 59 NA Drosophila melanogaster 50 Nipsnap FBgn0030724 FBtr0074258,FBtr0074257,FBtr0074259 1 3 3 277 X 15965372 15965390 TCTTAGCTTGATGCAGGAG 59 15964887 15965071 GCAGAGATTTGTAACACCA 57 NA DesignRelaxed Drosophila melanogaster 50 eIF5 FBgn0030719 FBtr0074149,FBtr0074144,FBtr0074148,FBtr0074147,FBtr0074146,FBtr0074150,FBtr0074145 2 7 7 129 X 15882572 15882664 CTGTTCGATCACAAGAATGAG 59 15882463 15882481 AATTGGTCTCCGGATTGTC 59 NA Drosophila melanogaster 50 eIF5 FBgn0030719 FBtr0074149,FBtr0074144,FBtr0074148,FBtr0074147,FBtr0074146,FBtr0074150,FBtr0074145 3 7 7 131 X 15882571 15882661 TTCGATCACAAGAATGAGC 57 15882458 15882476 AGTTAAATTGGTCTCCGGA 58 NA Drosophila melanogaster 50 CG8974 FBgn0030693 FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186 2 5 5 211 X 15688455 15688537 GATCCACGTAACAAAGTTCC 58 15688198 15688216 TGTTCATCCTCGTATTGCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG15645 FBgn0030657 FBtr0089701,FBtr0089702 2 2 2 60 X 15471753 15471772 GAGATCCAGAAGTTGTTGGA 59 15471712 15471733 TCTTCATTCGGATGAGATTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9514 FBgn0030592 FBtr0073980 1 1 1 153 X 14789821 14789840 GCTGTTGTCGTTATATTTGC 57 14782403 14782423 GTAGAGCATCGTATTTAGCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9522 FBgn0030587 FBtr0073986 2 1 1 60 X 14741671 14741689 TCAAGGCCATTGGAATACC 59 14741629 14741649 TGATCGAACATTCTCTTACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32613 FBgn0052613 FBtr0073887 2 1 1 60 X 13845392 13845410 TCTTCGCTATGGCTTAGAC 58 13845350 13845369 ACTGAATGACTGACAAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15211 FBgn0030234 FBtr0112977,FBtr0073376,FBtr0112975,FBtr0112976 3 4 4 188 X 10667186 10671999 AAATTGTGGAGTTTGTGCTG 59 10672150 10672250 TCAGCTCCGAGAATATCCA 59 NA Drosophila melanogaster 50 CG15249 FBgn0030161 FBtr0112966 3 1 2 103 X 9782871 9782889 ACAATTTAGCGATCCAGGT 58 9782720 9782738 GTTCCTCGCTGTTACTACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1354 FBgn0030151 FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386 2 4 4 98 X 9674840 9674858 CCGAATACGATTCGATGCT 59 9674919 9675204 TCAAGGCCTCAATATCATGG 59 NA Drosophila melanogaster 50 otu FBgn0003023 FBtr0071236 2 1 3 142 X 8381021 8381625 TGACTATAACTTTAAGGTCCCG 59 8380900 8380918 AAGACTTGTTGGCCTTACC 59 NA Drosophila melanogaster 50 Trxr-1 FBgn0020653 FBtr0071168,FBtr0071167,FBtr0071169 2 3 3 104 X 8140380 8140398 AAAGATCAAGCCAGACTGG 59 8140466 8140554 TACTCCACTTTCTTGTCGC 59 NA Nonspecific Drosophila melanogaster 50 CG15336 FBgn0030009 FBtr0071156 1 1 1 60 X 8042078 8042097 GATAATCGGCGACTTATGTG 58 8042120 8042138 GCAGATTCCAATAGATGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubc-E2H FBgn0029996 FBtr0071114,FBtr0071112,FBtr0071113 3 3 3 64 X 7983664 7983684 TGTGAACAAGATCTACCATCC 59 7983620 7983638 TGATAACATCCAGGCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Act5C FBgn0000042 FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822 3 4 4 153 X 5797300 5797318 GATGAAGATCCTGACCGAG 59 5797435 5797453 GTAGGACTTCTCCAACGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17764 FBgn0029751 FBtr0070757 1 1 1 119 X 5200833 5200851 TCTTCAGTCAGACAATGCC 59 5200732 5200752 CAGATTCCAGATTGAACTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070740 1 1 4 65 X 4959928 4959946 CCAAACAATAGTCTCGACG 58 4960134 4960152 CTCGTCGTACTCAATGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 SIP3 FBgn0061196 FBtr0070727 2 1 1 60 X 4854543 4854561 AATATGTTGCGCAGTTTGG 59 4854501 4854519 GAATATCGGCAATTCGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15240 FBgn0029684 FBtr0070628 2 1 1 79 X 3804821 3804839 CATCAAGTACTGTTCCCTG 57 3804760 3804778 GTTGCTGATTCTTGAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yin FBgn0015565 FBtr0070632,FBtr0070633,FBtr0070631 1 3 3 174 X 3759040 3759114 GATGCCAACTAAAGCTGTG 59 3758884 3758903 CAAAGATCCTGCGTTAATGG 59 NA Drosophila melanogaster 50 Rala FBgn0015286 FBtr0070584,FBtr0070583,FBtr0070582 2 3 3 97 X 3603937 3603956 GAGATAACTACTTTCGCAGC 58 3602942 3603880 GATTTGTTCTCTGAATTCCTGG 59 NA Drosophila melanogaster 50 gt FBgn0001150 FBtr0070460 3 1 1 111 X 2322216 2322234 CTTCTGCAAACCTTTGCTG 59 2322123 2322141 GAACGTCTATCTGCATGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4199 FBgn0025628 FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333 2 4 6 110 X 1965424 1965442 CAAGGAGTACAAGACCACG 59 1962396 1962414 GACATGGTTGTACTGGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14801 FBgn0024988 FBtr0070305,FBtr0070304,FBtr0070306,FBtr0070307 2 4 4 140 X 1737990 1738010 GTTTGATCATATCCACAAGCG 59 1738112 1744662 AGGAGTTTGTCTTCGATGC 59 NA Drosophila melanogaster 50 CG14786 FBgn0027794 FBtr0070230 2 1 1 60 X 1352397 1352416 CAAGTTCTGAAGGTTCAGGA 59 1352356 1352376 TGATGTGTAGGTCGAATATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3056 FBgn0024987 FBtr0070215,FBtr0070214 3 2 2 106 X 1265711 1265729 CAATTACTTGCCACAGGAC 58 1265798 1265957 TATATCCGGTCTTGAAGTCG 58 NA Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0070176 1 1 5 151 X 935428 936303 GATTGACAGATACGATGTGC 58 936417 936435 TGTACAGAAACAGGTACCG 58 NA Drosophila melanogaster 50 CG5273 FBgn0040382 FBtr0070136,FBtr0070135 3 2 3 289 X 654397 654415 CTACATACTATCCGTCCGC 59 654821 654839 GATTATGCGATCCTGACCA 59 NA DesignNoJunction Drosophila melanogaster 50 svr FBgn0004648 FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070082 1 5 7 104 X 396960 398709 AACTTTGATGGCAACTTCC 58 398777 398795 GTGTTCGTATTTAGTCGGG 57 NA Drosophila melanogaster 50 CG40971 FBgn0085547 FBtr0113960 1 1 1 60 U 8267568 8267586 TGGAAGACTTCAGAAGACG 58 8267526 8267544 CTTCGAGCACTAGATACGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41272 FBgn0085590 FBtr0114034 3 1 1 75 U 477450 489216 TGTACTCGTTCCTTCTTATTGG 59 489252 489270 TGTTGCAATTACCTGTCTG 57 NA DesignNoJunction Drosophila melanogaster 50 sphinx FBgn0083990 FBtr0111044,FBtr0111045 1 2 3 60 4 997418 997439 TACATACTGTCAGTATCGAAGG 58 997458 997478 GTTGTACTCACCTGGATAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pan FBgn0085432 FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156 1 8 10 80 4 115558 115579 ACGAGATAACTATGGTTACGTG 59 115618 120041 ATATTATTGCCTCCCGAATCC 59 NA Drosophila melanogaster 50 Or85e FBgn0026399 FBtr0081896 3 1 1 60 3R 4460301 4460320 TTCGAGCTCCTAATGTTCAC 59 4460260 4460279 CAGATCGAATACTATGCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 1 14 14 90 3R 27691897 27691915 ATACTGCACCAGATCTTCC 58 27691743 27691843 GATATTGGATGAGGGCCTG 59 NA Drosophila melanogaster 50 CG1638 FBgn0039855 FBtr0113315 1 1 1 84 3R 27416804 27416822 TCAACTTTAGAGGCTTCGC 59 27416930 27416948 TTCAGGTGCCTATTACAGC 59 NA DesignNoJunction Drosophila melanogaster 50 mRpL32 FBgn0039835 FBtr0085759 2 1 1 84 3R 27079010 27079084 AGTTCTTTGTCCCTTCTGC 59 27079132 27079150 ATCTAGACCGAGTGTCTCC 59 NA Drosophila melanogaster 50 CG33920 FBgn0053920 FBtr0091924 1 1 1 64 3R 26870353 26870371 TTTCATTAGGCCCTTCACC 59 26870250 26870268 TTTCGATCACGAGATCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 zfh1 FBgn0004606 FBtr0100269,FBtr0085701,FBtr0085702 1 3 3 195 3R 26611645 26611663 CACAAATACGAGCATTCCG 59 26611890 26611908 TGCAATAGGAATACCGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 aralar1 FBgn0028646 FBtr0085695,FBtr0085692,FBtr0085694,FBtr0085693 2 4 4 80 3R 26274281 26274365 CTAGTTTCGGTAACTGAGGG 59 26274220 26274238 CAGTTCCATGTTGTTCAGC 59 NA Drosophila melanogaster 50 CG9737 FBgn0039758 FBtr0085639 2 1 1 80 3R 26068275 26068296 ATGATCGTCATATCCTAACAGC 59 26068152 26068234 AACGCACATGCTTTAATCC 59 NA Drosophila melanogaster 50 RpS7 FBgn0039757 FBtr0089423,FBtr0089425,FBtr0089422 1 3 4 69 3R 26032436 26033825 TTGAACACAAAGTCGACAC 58 26032385 26032403 AATTCGAAGGTAACATCGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG31025 FBgn0051025 FBtr0085587 3 1 2 119 3R 25953816 25953900 AGACCCTCAAAGAAGATGC 59 25953715 25953733 GATCAATGGAAGAGGTGGA 58 NA Drosophila melanogaster 50 alph FBgn0086361 FBtr0085446,FBtr0085442,FBtr0085445 1 3 5 165 3R 25422972 25422990 AGTCTAGCAAGATAACCGA 57 25423191 25423899 TAATGCGTTGGACTTTCAC 58 NA Drosophila melanogaster 50 Cnx99A FBgn0015622 FBtr0110909,FBtr0085438,FBtr0085437 3 3 4 116 3R 25142527 25142547 CGATATTCTCTTCGACAACCT 59 25142077 25142449 ACGAATGAGTCCGATTCAC 59 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 3 8 8 148 3R 24962000 24962021 GCACAATCATACGTATTTCAGG 59 24962129 24962212 AGTAGGGCTTATCATTGGTG 59 NA Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 2 7 8 81 3R 24639657 24639675 TACTGCTACGGATATTGGC 58 24639719 24640879 GCTCAAACACCTTATAGCAG 58 NA Drosophila melanogaster 50 CG34354 FBgn0085383 FBtr0112564 1 1 1 118 3R 24027966 24052463 TGGAGAAATATCAGACTGCAG 59 24060809 24060827 CATTCATTGCAGTGATGGC 59 NA Drosophila melanogaster 50 CG4849 FBgn0039566 FBtr0085257 2 1 1 128 3R 23790245 23790322 TAAACAAGATTGATCGCCTC 57 23790472 23790490 AGAGATTGTCATCTGGAGC 58 NA Drosophila melanogaster 50 CG4884 FBgn0039565 FBtr0085264 2 1 1 85 3R 23783412 23783430 CGTCAATGGAAAGAAGCTG 59 23783293 23783311 TCGATTGACTAAAGCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5508 FBgn0027579 FBtr0085251,FBtr0085249,FBtr0085250 1 3 3 62 3R 23755849 23755867 GAAGTTCGAGTACCGACAG 59 23755951 23755969 ATTGCATGCTTCAGTACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12879 FBgn0039540 FBtr0085218 1 1 1 60 3R 23521507 23521525 GACCAGTGTCTACTGTCTG 59 23521549 23521567 ATAGCTCGAAATCTTTGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His2Av FBgn0001197 FBtr0085062 2 1 1 63 3R 22693481 22693500 ATATTGGAATACCTGACCGC 59 22694099 22694117 CTTTCAAGTCCTTCGATGC 58 NA DesignNoJunction Drosophila melanogaster 50 HLHm5 FBgn0002631 FBtr0084979 3 1 1 65 3R 21854947 21854966 ACTTCTGTTACAACCTCCAC 59 21854901 21854919 GTTATCGCTGTGGTATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4774 FBgn0039360 FBtr0084931,FBtr0084929,FBtr0084930 2 3 3 80 3R 21512087 21512106 ATATGTTATAGTCCAGGGCG 58 21511695 21512044 TGTCCATCCAACAGATCTG 58 NA Drosophila melanogaster 50 CG4673 FBgn0039348 FBtr0084893,FBtr0084892 2 2 2 81 3R 21448138 21448156 TTCGATCAATATTCAGCCG 57 21448015 21448094 CCAACCAATCTTCTTCAGTC 58 NA Drosophila melanogaster 50 CG10550 FBgn0039321 FBtr0084859,FBtr0084857,FBtr0084858 1 3 3 86 3R 21132485 21132504 TGCTGAAGTATGGATTCTGG 59 21132358 21132376 TCATATTGGCGTCCTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100638,FBtr0100637 1 3 17 115 3R 20508113 20512918 AGGGCGAAGACATATTGTG 59 20512997 20513015 GGAGAAAGACCACTTCGAC 59 NA Drosophila melanogaster 50 CG13613 FBgn0039193 FBtr0113278 1 1 1 79 3R 20191749 20191768 GGTCACCCAAGTTATAACCT 59 20191946 20191964 TATCACGATAATGCTGCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG13606 FBgn0039161 FBtr0110794 3 1 2 90 3R 20009628 20009646 TACTTTAGCACCACCTTCC 58 20009700 20009718 AGAAGTATCTAAACCGCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5991 FBgn0026576 FBtr0084537,FBtr0084536,FBtr0084538 2 3 3 60 3R 19878787 19878805 GATTCTTCTCCTACACCGC 59 19878829 19878847 TCCATGTAGATTTCGACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gdh FBgn0001098 FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498 3 4 4 98 3R 19763339 19763461 AAGCTAAGATCATTGCCGA 59 19763259 19763277 TGTACAGATCGGGAATGAC 58 NA Drosophila melanogaster 50 CG13837 FBgn0039042 FBtr0084345 3 1 1 60 3R 18870069 18870088 CCTTATATGGTCTGCTACGA 58 18870110 18870129 CTAGATGAGCAGGAGTACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7023 FBgn0039025 FBtr0084310 2 1 2 160 3R 18601042 18601060 AATGAGATCATACTGGCCG 59 18601364 18601382 GTCTCGGACGTAAGTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5315 FBgn0038984 FBtr0084283,FBtr0084284,FBtr0084282 2 3 3 83 3R 18370411 18370492 CTAATTCTGATGGGCCTCC 59 18370346 18370364 AAACTTTCCAGGGAACCAG 59 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0110938,FBtr0110939,FBtr0084021,FBtr0084022 1 4 12 105 3R 17027123 17027417 TATATGGTAGCATGCGTCG 59 17027486 17027504 TAGATGTCGTCGAGATCGT 59 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0112915 1 11 12 80 3R 17033375 17036516 ATCTATCAGATCTGGAAGAGG 57 17036558 17036576 TGGGTATCAGATCATAGCA 57 NA Drosophila melanogaster 50 AnnIX FBgn0000083 FBtr0089519 2 1 4 279 3R 16894413 16894431 AATACGAGAATCTGTCGGG 58 16894734 16895045 GATGTATCGCCCTTGATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG4335 FBgn0038795 FBtr0083894 1 1 1 60 3R 16232663 16232684 CTCAGGAATTTGTTCAACTCAG 59 16232624 16232642 GGGATGGTATTAAACACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5077 FBgn0038786 FBtr0083878,FBtr0083880,FBtr0083881,FBtr0083879 2 4 4 194 3R 16148680 16148698 TCCATCGAGACATTATCCC 58 16148855 16148946 CAAAGCAAGTTGCTTAATGG 58 NA Drosophila melanogaster 50 CG6184 FBgn0038725 FBtr0083802,FBtr0083800,FBtr0083801 1 3 3 87 3R 15479275 15479357 CCAAGGAATTTAAGGACTACGA 59 15479209 15479227 TACACCAGTTCGTACTCCT 59 NA Drosophila melanogaster 50 CG14302 FBgn0038647 FBtr0083673 3 1 1 191 3R 14558509 14558527 CTTCAACCTGCTGTTTAGC 59 14558682 14558700 TAGATGGTCGACGTTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14300 FBgn0038643 FBtr0100288 3 1 1 130 3R 14519218 14519236 GATGAGTCCGAGATTGGAC 59 14519106 14519124 TTGAGCAGATGCATGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15803 FBgn0038606 FBtr0083587 3 1 1 60 3R 14180906 14180926 TATACCAACTAAGCTCCTCTC 58 14180866 14180885 CGGATTCTGGAAGAGATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tinc FBgn0038554 FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769 1 4 4 82 3R 13678779 13678797 TCAATCTGCAGATTGTCCT 58 13678843 13683517 GTTGCCGACCTTAAATACG 58 NA Drosophila melanogaster 50 CG5873 FBgn0038511 FBtr0083442 1 1 1 131 3R 13261667 13261685 GTACCATCAGTTTGGTGAG 57 13261780 13266664 TTGTACGGGTTTAAAGTGC 58 NA Drosophila melanogaster 50 MESK4 FBgn0043069 FBtr0083367 3 1 1 84 3R 12815101 12815119 ACACTTTAATCCTGGACCG 59 12815166 12815249 TTGTTGATCCACAAGATCCT 58 NA Nonspecific Drosophila melanogaster 50 CG31275 FBgn0063261 FBtr0083346,FBtr0083345 2 2 2 60 3R 12576907 12576926 ACTATTGGGTATGTGGTGTC 59 12576866 12576884 TATCGAAGGATGTTTCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14888 FBgn0038442 FBtr0083298 3 1 1 86 3R 12378114 12378132 TAACCACAACCATCAAGGG 59 12378181 12378278 AAATCTGTGTATCAGGTGGT 58 NA Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204 1 6 8 163 3R 11782022 11785052 GACTGATGAGGAACAATGG 57 11785179 11785197 TTGATATTGTCGGTTCGTC 57 NA Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083209 2 1 8 124 3R 11779943 11780309 TCAAATCGGACAGGTTACC 59 11780394 11780478 CGAGAATGGTATTATCCTTGAC 58 NA Drosophila melanogaster 50 alpha-Man-IIb FBgn0026616 FBtr0083179 3 1 1 173 3R 11647813 11647891 GTTTCCAGTATCATGAACGT 57 11648027 11648045 GATCCAGCATAACCTCCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG5038 FBgn0038324 FBtr0083089 1 1 1 60 3R 11177376 11177395 ATGAAGTTCCTAAACCTCCT 57 11177418 11177436 GAATCAATCGCCACATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 btsz FBgn0053555 FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530 3 5 5 111 3R 10634167 10634187 GCAGTACAACTATAAGCTGAG 58 10634011 10634096 TAGATACACCTTAACGTAGGG 58 NA Drosophila melanogaster 50 CG9925 FBgn0038191 FBtr0082876 2 1 1 81 3R 9787987 9788005 CTAGTGATGTTTCCGTTGG 58 9787859 9787943 TCCTTACTCAATATCTCGCC 58 NA Drosophila melanogaster 50 Rbp4 FBgn0010258 FBtr0082853 1 1 1 81 3R 9480565 9480583 TTCAAGCCAGCTAAATCTC 57 9480415 9480520 CTTAGATACCGTAGGGTGG 58 NA Drosophila melanogaster 50 CG14369 FBgn0038159 FBtr0082789 1 1 1 138 3R 9418227 9418245 CATTGGAGCAGGAAATTGG 59 9418107 9418125 TATGCCCAAGAATAGCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14394 FBgn0038079 FBtr0113227,FBtr0114499 1 2 6 156 3R 8522009 8522181 CATAGTCATGCAGGTCCTG 59 8522298 8522319 GATGAACAGATTGATCATGGTC 59 NA Drosophila melanogaster 50 CG5509 FBgn0038054 FBtr0082633 3 1 1 60 3R 8278546 8278564 GGTCAGAAACTGAGTGACC 59 8278586 8278606 CGTACGGACTAAAGTTAATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34402 FBgn0085431 FBtr0112656,FBtr0112654 2 2 3 83 3R 8228195 8228269 CATTGGAAGTTGTGACCAC 58 8228314 8228334 TATCTGCTGAACTTTCGATCC 59 NA Drosophila melanogaster 50 CG10038 FBgn0038013 FBtr0082614,FBtr0082615 2 2 2 223 3R 8175080 8175156 TACTCTTGATTTGGTGGAGC 59 8174876 8174894 TCCATTCGTGCTTAGTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CoVa FBgn0019624 FBtr0082473 1 1 2 186 3R 7645326 7645344 GATCTGTCATACCCGTGTG 59 7645560 7645578 TGAAGTACTTCTCGTAGCG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG5270 FBgn0037897 FBtr0082387,FBtr0082388 3 2 2 81 3R 7254514 7254532 AAGTTCTTGGACAAGTGTG 57 7254577 7254656 CTAGTCGAATCTGCTTCAG 57 NA Drosophila melanogaster 50 nocturnin FBgn0037872 FBtr0113220,FBtr0113218,FBtr0113219 1 3 3 92 3R 7032967 7033089 CCTATCACAAACTCTCGGG 59 7033145 7033163 TGGACAATCAGGTACTTGC 59 NA Drosophila melanogaster 50 Ugt86Dg FBgn0040253 FBtr0082377 3 1 1 60 3R 6990896 6990914 CTAAAGCTTTAGCCCAGGA 58 6990854 6990872 ATTACACCATGCTCACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hth FBgn0001235 FBtr0100455,FBtr0082254,FBtr0082255,FBtr0100454,FBtr0082253,FBtr0082256 1 6 6 89 3R 6417178 6419287 GAAGTCGACTCACTGATGG 59 6411627 6411647 GAAGTTATCGCATAACTCGTG 59 NA Drosophila melanogaster 50 CG34302 FBgn0085331 FBtr0112498 1 1 1 60 3R 5648961 5648980 AGTCAATGAGGACTATTGGA 57 5648920 5648939 CTGAAACATCAGCATGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ps FBgn0026188 FBtr0111029,FBtr0111028,FBtr0111027 2 3 9 198 3R 5258550 5269739 ATTTCAGTTCCGGTGAGTC 59 5270868 5270886 GACATCTTGACCCTAGCAC 59 NA Drosophila melanogaster 50 CG33937 FBgn0053937 FBtr0091947,FBtr0091946 1 2 2 60 3R 5183234 5183252 AATAGATTCTCACTCGGCC 58 5183276 5183294 ACCGTCAACTGTACAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9740 FBgn0037669 FBtr0081984 2 1 1 61 3R 5083891 5083910 GAAGTCATGTCTCAAGTTCC 58 5083849 5083867 TAGCCTCCACCTTAATACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or85a FBgn0037576 FBtr0081836 2 1 1 85 3R 4148571 4148590 TCATTCACAATGTTCAGCAG 58 4148635 4148710 CTTGGCCATCTTTATATTGGTG 59 NA Drosophila melanogaster 50 CG9636 FBgn0037556 FBtr0081805,FBtr0081804 3 2 3 105 3R 4068193 4068212 GGGACAATAAGATCGTATCG 57 4068005 4068126 CTACTGCTAGGTTGAATCTG 57 NA Drosophila melanogaster 50 lds FBgn0002542 FBtr0081758 3 1 1 93 3R 3747546 3747865 GAATCGCTAAAGGACCTCC 59 3747921 3747940 TCATAAGCGATACCTTCAGG 58 NA Drosophila melanogaster 50 Mst84Da FBgn0004172 FBtr0081584 2 1 1 299 3R 3191578 3191598 CCACCTTCAATAGTTAACACC 58 3191914 3191932 AGTATTCCGACAGGTTTCC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14605 FBgn0037486 FBtr0081600,FBtr0081601 1 2 3 82 3R 3044111 3044315 CCTGCTGATTTCTTTAACAAGG 59 3044050 3044068 GATCCCGACATCTGATTGG 59 NA Drosophila melanogaster 50 Ccp84Ab FBgn0004782 FBtr0081692 3 1 1 75 3R 2528178 2528196 AGAGTACTCCCTGATCGAC 59 2528121 2528139 GTTGAATCCGTTGATGGGA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31286 FBgn0051286 FBtr0081682,FBtr0081683 2 2 2 96 3R 2467278 2467353 TTATGCTTGGAAACTGTCCA 59 2467409 2467430 CCTCTTTACTTCAAATCTGCAG 59 NA Drosophila melanogaster 50 CG17917 FBgn0037431 FBtr0081709 1 1 1 66 3R 2167824 2167842 TGTAATACACATCGGACCG 59 2168072 2168090 ACAATGTGCTGCTAAATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rm62 FBgn0003261 FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653 3 6 6 156 3R 1829624 1829748 AGGAGGAGAAATTGAAGACC 59 1829487 1829505 TTGTCACCGTGAATAGCTC 59 NA Drosophila melanogaster 50 CG1193 FBgn0037375 FBtr0078628,FBtr0078627 1 2 2 189 3R 1611780 1611995 AATACTCCAGGAAGCAGTG 58 1612148 1612166 GTATTTCGAGGTCAGGGTC 59 NA Drosophila melanogaster 50 CG31542 FBgn0051542 FBtr0078786 3 1 1 123 3R 1195951 1195969 GAAGAAGTGCGTCATTCAG 58 1196056 1196074 TTGGGAGTACTGTCATGTC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11739 FBgn0037239 FBtr0078915,FBtr0078913,FBtr0078916,FBtr0078914 2 4 4 80 3R 205702 205720 CAATCAGACATTCAACGCC 59 205764 205845 GAGGTAACTAGTTGCTGCT 58 NA Drosophila melanogaster 50 CG9791 FBgn0037232 FBtr0078904 3 1 2 82 3R 139481 139569 GACGTGATGGATCTCTATCG 59 139613 139632 ATTTCGTCCAGTTCCTTCTG 59 NA Drosophila melanogaster 50 CG1092 FBgn0037228 FBtr0111222,FBtr0078978 1 2 2 60 3R 93458 93476 GGATTGGAGCATGTACCTC 59 93500 93518 CGTGGAGTAGAAGTAGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32028 FBgn0062463 FBtr0076660 3 1 1 112 3L 8434322 8434340 CGCTGTGAAATTAACTCGT 58 8434228 8434247 TAAACTCCGCTTTACTTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Csp FBgn0004179 FBtr0078495,FBtr0078493 3 2 3 187 3L 22263010 22264665 CACATCTGAATGAGGACGT 59 22264816 22264834 GTTTAGCGACGTATTCTCG 58 NA Drosophila melanogaster 50 CG32447 FBgn0052447 FBtr0078460,FBtr0078461 1 2 2 183 3L 21687566 21687584 TTCTGCTATTATCCTCCCG 58 21686807 21687419 GTCGTATAAACATGCCTGG 58 NA Drosophila melanogaster 50 CG7597 FBgn0037093 FBtr0078357,FBtr0078358 2 2 2 115 3L 21513430 21513511 TACGGACAGGTTTACAAGG 58 21513590 21513608 TTGATTTCACGAACAGCTG 58 NA Drosophila melanogaster 50 CG7202 FBgn0037086 FBtr0078393 1 1 1 60 3L 21484877 21484896 CTATGGAAGTGTCAGATCCG 59 21484836 21484854 CATTGATTCTTCGGAGGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10508 FBgn0037060 FBtr0078302,FBtr0078303,FBtr0078301 3 3 4 87 3L 21208529 21208548 CTATTATCGAACGAATGGCC 58 21208598 21208690 GTGACATAATCGGCTAGCA 59 NA Drosophila melanogaster 50 CG32425 FBgn0052425 FBtr0078205,FBtr0078202,FBtr0078203 3 3 5 165 3L 20505333 20505351 ATCATCAATGATGAGCGCT 59 20505480 20505633 AGATCACTGGTAGCTTTCC 58 NA Drosophila melanogaster 50 CG6259 FBgn0036740 FBtr0075201 1 1 1 103 3L 17613904 17613922 CTTGAAGGATACTCAGGCC 59 17613740 17613837 CTTGGATGTCCTCGATCTG 59 NA Drosophila melanogaster 50 TpnC73F FBgn0010424 FBtr0089585,FBtr0089586 3 2 2 91 3L 17039495 17039513 TTCGATCACCAGAAGACTG 59 17039632 17039650 TCCAGGATCTTCTTGTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG13022 FBgn0036679 FBtr0075299 1 1 1 60 3L 16931832 16931850 AGGACAAGACAGAATCCAC 58 16931790 16931808 CCACTGCTAGGTTATCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11905 FBgn0036678 FBtr0075305,FBtr0113174,FBtr0075300 2 3 10 196 3L 16922148 16922167 ATGGCTCCTAAGAAAGATGC 59 16921906 16921924 AATGAAATGCTGAAGGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32161 FBgn0052161 FBtr0075331 2 1 1 63 3L 16839993 16840011 GACACTTCAAGGCTACAGG 59 16840038 16840056 ACTAAGACGGGAATTGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9669 FBgn0036667 FBtr0075339 3 1 1 63 3L 16837870 16837888 TCATCGGAACCTTCTTCAC 59 16837825 16837843 TCCTTAGAGCTCTTTCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12486 FBgn0036541 FBtr0075533 1 1 1 60 3L 15849168 15849186 CCCACTGAGCATATCTACG 59 15849126 15849144 CTTTCGTACTTGTGACACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dcp2 FBgn0036534 FBtr0100528,FBtr0075539,FBtr0075538 1 3 4 85 3L 15815229 15815247 GTACTGTATCCTCGAAGCG 59 15815103 15815181 GCTGACAATCTTCTCATTGC 59 NA Drosophila melanogaster 50 CG33985 FBgn0053985 FBtr0100030 3 1 1 60 3L 15519572 15519590 TTCCACAGTTGTAATCACC 57 15519530 15519548 GACTGATGGTCGTAATGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eip71CD FBgn0000565 FBtr0075553,FBtr0075552,FBtr0075555,FBtr0075554 2 4 4 69 3L 15505788 15505806 TCATAACCACTGAGATTGC 57 15505898 15505916 AACCTATACTTCTGGTGGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG13472 FBgn0036450 FBtr0075691 2 1 1 85 3L 14782305 14782430 GATGGAAGGTATTATGAGGCT 59 14782477 14782495 TCCTCATGGTTTCCATAGC 59 NA Drosophila melanogaster 50 CG32143 FBgn0052143 FBtr0075683 1 1 2 60 3L 14674941 14674959 TCTAGTTTCAGTCTTGCCG 59 14674983 14675001 AATCATAGAAGGACGCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13737 FBgn0036382 FBtr0075754,FBtr0075755 3 2 2 64 3L 13875755 13875773 ATGGAGACCTATTTGACGG 58 13875801 13875819 CTGTTGGGCTCAAATTTCG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13737 FBgn0036382 FBtr0075754,FBtr0075755 1 2 2 62 3L 13875757 13875775 GGAGACCTATTTGACGGAG 59 13875801 13875819 CTGTTGGGCTCAAATTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10743 FBgn0036376 FBtr0075814,FBtr0075813 2 2 2 102 3L 13507881 13507899 CTGCTATGAGGACAATTGC 58 13508023 13508044 CATCTTTAGGTTTAGCTCTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG10089 FBgn0036369 FBtr0075822,FBtr0075823,FBtr0075820,FBtr0075821 1 4 4 135 3L 13462085 13462103 AAGATCTCGCACATCATCG 59 13461910 13461928 GTATGAAGTCGTTGCAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32118 FBgn0052118 FBtr0075889 1 1 1 60 3L 13091354 13091374 GCCATTGATGTGATACAACTC 59 13091395 13091414 GAAGACTACTAGGGTTTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11006 FBgn0027534 FBtr0075927,FBtr0075929,FBtr0114506,FBtr0075928 3 4 4 85 3L 12803755 12803840 TTGATGAAGATCGATGAGAAGG 59 12803886 12803904 AATGATAGAACGCCTGTGG 59 NA Drosophila melanogaster 50 CG10973 FBgn0036306 FBtr0100354,FBtr0075950 3 2 2 199 3L 12746676 12746694 AGTGTTTCCTGTGCTAGTG 59 12746435 12746513 TAACCATGTCTTCACACGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG10632 FBgn0036302 FBtr0114612,FBtr0114609 3 2 4 177 3L 12533237 12533498 ATGTCTACAAGGCCAATCG 59 12531537 12531555 TTTACCCGGACATTCAGAG 58 NA Drosophila melanogaster 50 CG10646 FBgn0036292 FBtr0075972 2 1 1 82 3L 12496861 12496879 TTAACACCTCAGTACGGAG 58 12496797 12496815 AAGTGAACCTGATTGGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAP68F FBgn0036257 FBtr0075997 3 1 1 90 3L 12134437 12134455 GTTTGATGATACCGAGCTG 58 12134572 12134647 CTCAAGTTCTGGATCTTCG 57 NA Drosophila melanogaster 50 Atg12 FBgn0036255 FBtr0089325 2 1 1 60 3L 12130500 12130518 CAAGAACTTGTACGAGTGC 58 12130540 12130560 ATTCTTGCAGTAGTAGAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10361 FBgn0036208 FBtr0076084 3 1 1 121 3L 11793263 11793281 ACAACTACTTAGGACTGGC 58 11793099 11793117 CTTGTGTATATCCTGCGTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG6024 FBgn0036202 FBtr0113164,FBtr0113165,FBtr0113166 3 3 3 91 3L 11752784 11752802 GCTAATCCTCATCGGACTC 59 11737115 11752729 GCGACTGCATGTAATAGTG 58 NA Drosophila melanogaster 50 CG32068 FBgn0052068 FBtr0113421 1 1 1 81 3L 10656762 10656782 GAGTACCAGAGCGATAATACC 59 10656825 10656905 TTTCCGAGCATGTGATCTC 59 NA Drosophila melanogaster 50 hay FBgn0001179 FBtr0076253,FBtr0114599 2 2 2 116 3L 10626350 10626368 TTCATCTATGGTCCCACCT 59 10626504 10626523 CAAATCGAAACTGGTGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32063 FBgn0045770 FBtr0076286,FBtr0076287 2 2 2 60 3L 10459993 10460011 GAGGGTATGGAGAATGTGC 59 10460032 10460053 CAATACTTTGTAATGATCGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4452 FBgn0035981 FBtr0089493,FBtr0089494,FBtr0089495 3 3 3 184 3L 9361224 9361242 AGTGCGAACATTATCTGGG 59 9362076 9362094 TCTTGGACATCGGTATACG 58 NA DesignNoJunction Drosophila melanogaster 50 bol FBgn0011206 FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538 1 4 4 129 3L 9101077 9101095 ATACCCATGGATCAGTTCG 58 9100463 9100724 TGGTGGGTACATTCATTGG 59 NA Drosophila melanogaster 50 CG5144 FBgn0035957 FBtr0076523 1 1 1 60 3L 9041123 9041142 GCTGGAGAGTAAGATTTGTG 58 9041163 9041183 GTATTTACCCTTGTACTCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5288 FBgn0035950 FBtr0076553,FBtr0076555,FBtr0076554 1 3 3 80 3L 8977957 8977977 CTTCAACTCAGAAATCTCGAG 58 8977752 8977915 CTTTGGAAGCTCGATTCTG 58 NA Drosophila melanogaster 50 Prm FBgn0003149 FBtr0076596,FBtr0076593,FBtr0076594,FBtr0076595 1 4 4 221 3L 8727222 8727349 CGAAGTCAAGAACTTGTCC 58 8727019 8727037 ATGAGGTTCTTCTGGTCCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG6416 FBgn0035917 FBtr0089564,FBtr0089566,FBtr0089565,FBtr0089562 2 4 8 86 3L 8623724 8627690 ATTCAATACCAACCCTACCG 59 8627739 8627757 CAAGTAGGACTCTGTCGTG 59 NA Drosophila melanogaster 50 Unr FBgn0035895 FBtr0114592,FBtr0076661 3 2 2 85 3L 8429048 8429129 CATAGAAGGATGTGTAACTCG 57 8428983 8429002 GTTCATAGGTAATCACACCG 58 NA Drosophila melanogaster 50 CG34461 FBgn0085490 FBtr0112767 1 1 1 151 3L 8319406 8319424 CTACGGCATTAAGGATCCC 59 8319996 8320014 CATTGAAGCCATTGTGGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8044 FBgn0035829 FBtr0076765,FBtr0076764 2 2 2 139 3L 7968997 7969015 ATCAAGTCGTCGACTTCTC 59 7968876 7968895 GAATTCATGATGGAACTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8562 FBgn0035779 FBtr0076854 2 1 1 70 3L 7392425 7392443 CTCCTACGGCAACTATCTG 59 7392537 7392555 CCAGATCCTCCCAATTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10064 FBgn0035724 FBtr0076937 1 1 1 80 3L 6959185 6959206 GGATATCAACTATCTCGACACC 59 6959063 6959144 GTCATGCGTTTAATGTCCC 59 NA Drosophila melanogaster 50 l(3)mbn FBgn0002440 FBtr0100355,FBtr0077062 3 2 2 90 3L 6117829 6117916 AATGTACCCTCAAATGGTGG 59 6117758 6117776 CTCCTGCACCGATAATACC 59 NA Drosophila melanogaster 50 DnaJ-1 FBgn0015657 FBtr0077124,FBtr0077123 3 2 2 60 3L 5744201 5744219 ATCGAGCATGATCTGTTCG 59 5744159 5744178 TCATCTTCTTGATGCATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17030 FBgn0035584 FBtr0073374 3 1 1 63 3L 4980548 4980569 GGAGGATAAACAGAATTTGCAG 59 4980506 4980525 CCACTTGTAGATGTTGTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1268 FBgn0035521 FBtr0113137,FBtr0073230,FBtr0113136 3 3 3 98 3L 4262902 4262920 CTCACCAGAATCTGATCCG 59 4262981 4263000 CGATCAAGGGATTCATTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1265 FBgn0035517 FBtr0073228 2 1 1 82 3L 4255722 4255812 CAAACATGACTCGAATCTACAC 59 4255855 4255873 AAGGAACGTCGAAATCAGG 59 NA Drosophila melanogaster 50 pav FBgn0011692 FBtr0073227 3 1 1 90 3L 4243626 4243644 CATGTACTCGGTGTTTGTC 58 4243696 4243774 CTGCAAAGTCTTCTGTATACC 58 NA Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0110922,FBtr0073132,FBtr0073135,FBtr0110924,FBtr0073131,FBtr0073134,FBtr0110923,FBtr0110920,FBtr0110925,FBtr0073133,FBtr0110921 1 11 11 117 3L 3552857 3578300 CAGATTAACAATTTCCCGCG 59 3578377 3578398 GTTGTATGGAACTTTGTTACCG 59 NA Drosophila melanogaster 50 PHGPx FBgn0035438 FBtr0073068,FBtr0073066,FBtr0073067 1 3 4 138 3L 3328064 3328082 CTGGTGATCCTCAACTTCC 59 3328251 3328269 TGTCTCCATTCACATCGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32280 FBgn0052280 FBtr0073030,FBtr0073031,FBtr0073032 2 3 3 125 3L 3168251 3168338 GATTGCCCTATTTGGTTGC 59 3168426 3168445 CAATCCTATCGACGGTATCG 59 NA InUTR Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 3 9 15 80 3L 3083795 3084813 CTCGCCACTTATATGAATCGA 59 3084852 3084873 CAAATTAAGTAGTGAGAACCCG 59 NA Drosophila melanogaster 50 CG32295 FBgn0052295 FBtr0072962 3 1 1 61 3L 2526056 2526075 CGTATGATCGATTTGATGGA 57 2526014 2526032 TTATCCGGAATCGGTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GV1 FBgn0027790 FBtr0072785,FBtr0072784 2 2 2 224 3L 1821407 1821812 CCAATCCCTATGTCTACGT 58 1822000 1822018 TATCAGACACAATTGCCGT 59 NA DesignRelaxed Drosophila melanogaster 50 drpr FBgn0027594 FBtr0072798 1 1 2 97 3L 1716832 1716850 AAGAGGAGCATGTCTACGA 59 1716546 1716682 ATCGTATTCATCCTCGGGA 59 NA Drosophila melanogaster 50 CG9130 FBgn0035197 FBtr0072655,FBtr0072657 3 2 2 60 3L 1252201 1252221 AATCCGATAAGTCTGAGAAGC 59 1252242 1252261 ATGTAGAGGAAGTTTCCTGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34263 FBgn0085292 FBtr0112458 3 1 1 62 3L 265790 265811 GTGCTATTACCAATTGTGATCC 59 265749 265767 ATTGGTGCTCATTTGTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me28S-A2589a FBgn0086023 FBtr0114299 3 1 1 84 2R 17212744 17212762 TACTGAGTGCCTAAATCGA 57 17212809 17212828 GTTATCAGACAAATGCCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR14499 FBgn0034317 FBtr0086751 1 1 1 60 2R 14075374 14075392 AAGAACTTCTTCGGATCGT 58 14075415 14075434 ATTGCTAAAGCTCAGAAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4692 FBgn0035032 FBtr0072340,FBtr0072339 2 2 2 60 2R 20486728 20486748 GCAACAGATTCTACACTTTCC 59 20486688 20486709 TATAGTTTAGTGGTGATTGCCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 pio FBgn0020521 FBtr0072312,FBtr0072313 2 2 2 186 2R 20476321 20476910 ACTTAATCACAATCGCAGC 58 20479586 20479604 TTAATGGTGATCAGCATCG 57 NA Drosophila melanogaster 50 CG5539 FBgn0034907 FBtr0072123 1 1 1 60 2R 19692533 19692553 CTATAAGACTCTGAACAGCGG 59 19692574 19692593 AACTATCCAGTATTTGGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9850 FBgn0034903 FBtr0100330 1 1 2 80 2R 19644063 19644947 TAGTCTACAATGTAACCAGCAG 59 19644004 19644022 GATTCTCGTCCTTGTTGCT 59 NA Drosophila melanogaster 50 apt FBgn0015903 FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067 3 5 5 109 2R 19484510 19484593 CATAAAGACGGAAATGACACAG 59 19484659 19484681 GATCGAGTAGGTATTTCTTCTCC 59 NA Drosophila melanogaster 50 PIP5K59B FBgn0034789 FBtr0071901,FBtr0110862,FBtr0071900 3 3 3 102 2R 18763722 18763742 TCTATATTCTACCTGACGACC 57 18763803 18763886 GATTCATATAGTAACCAGGCAG 58 NA Drosophila melanogaster 50 CG34446 FBgn0085475 FBtr0112750 1 1 1 64 2R 18535235 18535253 AAACCACTTTACTTTGCCG 58 18535189 18535207 TTGGTCCTGCAATAAGGAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 px FBgn0003175 FBtr0112821,FBtr0112820 1 2 3 103 2R 18430901 18430919 TTTCAAGCCAAAGGATACG 58 18428464 18428482 ACTCCGGTTTATGAGATGC 59 NA DesignNoJunction Drosophila melanogaster 50 LBR FBgn0034657 FBtr0071711,FBtr0071712 3 2 3 109 2R 17608823 17609371 GGTTTCCGAGGTATCATCG 59 17609444 17609462 CGGAGCTTGTGTTAAATGC 59 NA Drosophila melanogaster 50 RpL29 FBgn0016726 FBtr0071593,FBtr0071594,FBtr0071592 2 3 3 137 2R 17181657 17181744 CACTCTGGGTATGGATGTG 59 17181844 17181863 TACAGAGTAACAGGCTTTGG 59 NA Drosophila melanogaster 50 CG4286 FBgn0034601 FBtr0071627 1 1 1 60 2R 17065905 17065923 CATCGAGGAAGAGTTCCTG 59 17065863 17065881 CTTCGGATTCATGGGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mago FBgn0002736 FBtr0071569 2 1 1 62 2R 17016322 17016340 AAGAACGACACCATGATCC 59 17016366 17016384 CTTCAGTTCTTCCATCACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11055 FBgn0034491 FBtr0086271,FBtr0086270,FBtr0086272 1 3 3 141 2R 16148062 16148142 CTTACACTTAACATGGACCC 57 16148245 16148324 CTTCGTTGGATAACATTGTG 57 NA Drosophila melanogaster 50 CG16898 FBgn0034480 FBtr0086325 1 1 1 60 2R 15892255 15892276 AATCCCTATCAGAAGATTGTCC 59 15892216 15892237 CGGTTATACACATCATACTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CalpA FBgn0012051 FBtr0086529,FBtr0112869 3 2 3 123 2R 15316872 15316890 CATCGATCCTCAGAAGGAG 58 15316977 15317053 TTTGGGTAAATCGTCCCTC 59 NA Drosophila melanogaster 50 CG7461 FBgn0034432 FBtr0086517 3 1 1 60 2R 15193938 15193958 GACGAGGCTATACAAATTCTG 58 15193979 15193998 CTCGTTCCAATCCATTATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 IM2 FBgn0025583 FBtr0086664 2 1 1 115 2R 14274182 14274200 AGTTCTTCTCAGTCGTCAC 58 14274341 14274359 ATTGCAGTATTTGCAGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5098 FBgn0034300 FBtr0113092,FBtr0086732 3 2 2 196 2R 13986927 13986945 GTACCTAGTGACTAGCGAC 58 13987105 13987192 GCTTACGTTTATGCATGCT 58 NA DesignRelaxed Drosophila melanogaster 50 spin FBgn0086676 FBtr0089593,FBtr0089589,FBtr0089592,FBtr0089590,FBtr0089591 2 5 5 96 2R 12019319 12019339 ATTATCTCGGATCTGTTCGTG 59 12019397 12019824 CCACAATGTATCCCAGACC 59 NA Drosophila melanogaster 50 Jhe FBgn0010052 FBtr0087223 1 1 1 80 2R 12008553 12008572 GACCCGAATACTTTATGGAC 57 12008615 12008699 TCGATAGGAATCCAAAGGG 58 NA Drosophila melanogaster 50 Asph FBgn0034075 FBtr0087218,FBtr0087221 2 2 4 89 2R 12000754 12001291 CCAAATACAACTGAGGATGAG 58 12001342 12001360 ATCATCCGGTATGTGATCC 58 NA Drosophila melanogaster 50 CG10257 FBgn0033985 FBtr0087408 3 1 1 146 2R 10830748 10830767 CATGATTTGGGTCAATGGAC 59 10831382 10831400 ATGTAGAGGGAGTACTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG10151 FBgn0033960 FBtr0087471,FBtr0087472 1 2 3 80 2R 10641389 10641503 ATCACGAGAAAGCAATGAG 57 10641327 10641345 AACGATTGTGTTGGATCTC 57 NA Drosophila melanogaster 50 tra2 FBgn0003742 FBtr0089617,FBtr0089620,FBtr0089615,FBtr0089619,FBtr0089616,FBtr0089621 3 6 7 143 2R 10490376 10490678 GATTGACGCACAAACACAG 59 10490251 10490272 CGTTGGGTTATAGAGAAATCGA 59 NA Drosophila melanogaster 50 CG8485 FBgn0033915 FBtr0087572,FBtr0087570,FBtr0087571,FBtr0087569 1 4 4 90 2R 10126046 10126142 GTTCACAGGGATCTAAAGC 57 10125974 10125992 AGAACTTGTTGCTAAACCC 57 NA Drosophila melanogaster 50 cg FBgn0000289 FBtr0112795,FBtr0112794,FBtr0112796,FBtr0087527 1 4 7 97 2R 10064188 10064691 ACAAGAACTATCTGCTAGTGG 59 10064750 10064768 ATTGGTCAACGTATGGTGG 59 NA Drosophila melanogaster 50 CG8233 FBgn0033897 FBtr0087582,FBtr0087584,FBtr0087583 3 3 3 84 2R 10037317 10037743 TTTGTTCCTCACAATGATGC 59 10037252 10037270 GAGTTATCACCTTTGGCAG 58 NA Drosophila melanogaster 50 CG3955 FBgn0033793 FBtr0087780 3 1 1 68 2R 9015922 9015940 ATGTACTGCCAACTGTGAG 59 9015872 9015890 GAAGTGCAGGAATAGAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spt4 FBgn0028683 FBtr0087840 2 1 1 75 2R 8521420 8521438 ATTATTGCCCTAACTACGC 57 8521543 8521561 AGATACCACGAGTAAAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 Cyp6g2 FBgn0033696 FBtr0088009 2 1 1 60 2R 8077497 8077518 GATCCCAGAACATATTCTTCCT 59 8077458 8077477 GATAGCTTCAAACGTACCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30036 FBgn0050036 FBtr0088050 1 1 1 60 2R 7865989 7866007 CGTATTCATCTTGGGACGA 59 7865947 7865968 CCTGAATAGCTTATCAAGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ef1alpha48D FBgn0000556 FBtr0088036,FBtr0088035 1 2 2 60 2R 7781322 7781340 AACTGCCAAGTACTACGTG 59 7781362 7781382 GTTCTTGATGAAATCCCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7777 FBgn0033635 FBtr0088136,FBtr0088137 2 2 2 245 2R 7327364 7327484 TCTCAATGAGCTCAAATCCA 59 7327753 7327771 ATCAAGCTAATTCGTCCTG 57 NA DesignRelaxed Drosophila melanogaster 50 CG13223 FBgn0033599 FBtr0088113 3 1 1 81 2R 7145171 7145246 GCCTACATAATAGTTCGAGGA 58 7145288 7145307 TAGCCACAGGAATCATTAGG 58 NA Drosophila melanogaster 50 CG12943 FBgn0033572 FBtr0088198 3 1 2 85 2R 6792307 6792325 TGGAATCATCGGCTATTGG 59 6792373 6792513 ACTGGGAAAGGATTTCATCC 59 NA Drosophila melanogaster 50 CG33144 FBgn0053144 FBtr0088254 2 1 1 69 2R 6629450 6629471 GAACCTAACTACAACGAATCTG 58 6629341 6629420 GTCCAATTCGATTTCTCGA 57 NA DesignRelaxed Drosophila melanogaster 50 CAP FBgn0033504 FBtr0088344 3 1 10 82 2R 6187766 6192142 CTTTAAAGACGTGAACATCCAC 59 6192184 6192203 GAATGGCTAGTTCCTCTTCC 59 NA Drosophila melanogaster 50 CG30342 FBgn0050342 FBtr0088582 1 1 1 60 2R 5032001 5032022 GTACATAGACAATCGAAAGCTG 59 5032043 5032061 GTAGACAATCTCGAACTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vang FBgn0015838 FBtr0088566 2 1 1 60 2R 4992059 4992080 CTACTACATCAAGATCATTCGC 58 4992101 4992119 CTGACCCAACATGTAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13748 FBgn0033355 FBtr0088656 3 1 1 115 2R 4827985 4828003 ACTGAAAGAGTACGTTGGA 58 4828082 4828100 AGATGGCGTCAAAGAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14767 FBgn0040777 FBtr0088720,FBtr0088719 2 2 3 151 2R 4607469 4607487 GGAGATGATGGACGAACTG 59 4607278 4607355 TATCGAAGTTCTGGTAACGC 59 NA Drosophila melanogaster 50 CG30359 FBgn0050359 FBtr0088749 2 1 1 86 2R 4351070 4351146 ACCATGAGTAACGTCTTGAG 59 4351195 4351213 CGCTATTTCGAACACATGG 59 NA Drosophila melanogaster 50 lig FBgn0020279 FBtr0100575,FBtr0088775,FBtr0088776,FBtr0088774 3 4 4 81 2R 3961935 3961953 TGCCATACTATCAGCAACC 59 3961997 3962988 TAATATCCCTGCACATGTGG 59 NA Drosophila melanogaster 50 Nup44A FBgn0033247 FBtr0088860,FBtr0088861 3 2 3 142 2R 3877556 3877635 TCAGACCGTCAAGATTTGG 59 3877741 3877759 GATCAAATGAGCATGTGGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG18812 FBgn0042135 FBtr0088935 1 1 3 82 2R 3616657 3616946 CTTCGTAATCTGGGATGGG 59 3616593 3616611 TGCTTTCAGTCAGAGTCTC 58 NA Drosophila melanogaster 50 didum FBgn0015933 FBtr0089745,FBtr0089743 3 2 3 118 2R 3394087 3394172 TGTATTCGATACACCGATCTG 59 3394251 3394270 ATAACACGATTCTCGATCGG 59 NA Drosophila melanogaster 50 CG12831 FBgn0033141 FBtr0089057 2 1 1 74 2R 2961011 2961029 CCAATTACGCATCCATCAG 58 2960955 2960974 AATTGGTGGATAACCTTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Spn1 FBgn0028988 FBtr0086163 2 1 1 278 2R 2771949 2772025 GAGACCTTAGAGAAGCTGG 58 2772336 2772355 TATTCAAGGGCTTACAACAC 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG3420 FBgn0033100 FBtr0086135 2 1 1 60 2R 2644051 2644070 GAGTTCCTGAAGATCAAGCA 59 2643949 2643967 AGTAGTCTCCCGACTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Tdc1 FBgn0050445 FBtr0086143 3 1 1 199 2R 2565501 2565519 ATGAACGATTTGAGGTTCG 58 2565198 2565216 CAGGATGTCCTTCTCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17683 FBgn0040002 FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300 3 4 5 80 2R 19474 19549 AATCACTTCAGTTGAGGTG 57 19591 19611 CAGTCTAAATCAAGGAGATCG 57 NA Drosophila melanogaster 50 step FBgn0086779 FBtr0110946,FBtr0085910 3 2 2 91 2L 21742582 21742600 TATTCACCAACACGGACAC 59 21742266 21742529 GGGTTTGTCTTTAACAGATGG 59 NA Drosophila melanogaster 50 CG2225 FBgn0032957 FBtr0085918,FBtr0085915 1 2 5 82 2L 21670580 21670601 GGAGATTCACTTTAGAAACAGC 59 21670466 21670537 CTATTAACGATCGCACCGT 59 NA Drosophila melanogaster 50 CG8678 FBgn0032935 FBtr0081487 1 1 1 166 2L 21213357 21213375 AGACTAAGCCTTCGAATCC 58 21213153 21213227 AAACTTGGCAGAATCAGAC 57 NA Drosophila melanogaster 50 Dap160 FBgn0023388 FBtr0081503,FBtr0081504 2 2 2 80 2L 21137683 21137769 GAACAGATCTTGGACAAGG 57 21137621 21137639 ATCGTCCTTATCAAACGAC 57 NA Drosophila melanogaster 50 CG9270 FBgn0032908 FBtr0081436,FBtr0081435 1 2 2 90 2L 20930076 20930152 CTTAGAAGAGGTGCACCTC 59 20930004 20930022 TACACTGTAGTTGGATCCG 58 NA Drosophila melanogaster 50 CheB38b FBgn0067311 FBtr0081454 2 1 1 81 2L 20816837 20816856 TGGTTCAAGTATTGGTTCAG 57 20816716 20816793 CTAGCACGGTATCTTTCAC 57 NA Drosophila melanogaster 50 CG13958 FBgn0032825 FBtr0081295 3 1 1 60 2L 19828688 19828706 ACTATGTGCTCTTCAACCC 59 19828729 19828748 TTGCGTATCTTGTACTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spi FBgn0005672 FBtr0081271,FBtr0081269,FBtr0081268,FBtr0081270,FBtr0100597,FBtr0081272,FBtr0081267 3 7 7 65 2L 19568669 19568687 ATCTACCGGTTTACAGCTG 59 19568622 19568640 TCTCCTTGTATTCGCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)37Cd FBgn0086445 FBtr0081156 3 1 1 109 2L 19127556 19127574 GCTATCCATAACCGTGAGG 59 19127647 19127722 CACAAAGCGTTTCAAAGGT 59 NA Drosophila melanogaster 50 ncm FBgn0086707 FBtr0081088 1 1 1 118 2L 18446810 18446828 CACATCTGATGATGCTGGA 59 18446646 18446664 CAGGATCTCACGACTTAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CadN FBgn0015609 FBtr0100316,FBtr0100313,FBtr0081020,FBtr0081016,FBtr0081013,FBtr0081015 3 6 12 102 2L 17651479 17655676 CATACTGATACTCGTCTTGGT 59 17651397 17651415 GTTGATGATATTCTCGCGC 59 NA Drosophila melanogaster 50 Idgf3 FBgn0020414 FBtr0080864,FBtr0080862,FBtr0080863 2 3 3 91 2L 16451847 16451865 TGATCAAGGATTTGAGTGC 57 16451920 16452204 ATCATAGTACCAGCTGGAG 57 NA Drosophila melanogaster 50 CG4930 FBgn0028515 FBtr0080824 3 1 1 62 2L 16258273 16258292 GATCCCGTTAAGGATTACCA 58 16258317 16258335 ATCCACGATTTCGTCTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18063 FBgn0028856 FBtr0080798,FBtr0080797 3 2 2 83 2L 15958577 15958709 GACTCGAGCATATGTCTGG 59 15958756 15958774 TTTGTAGCAAGCATTAGCG 58 NA Drosophila melanogaster 50 CG15255 FBgn0028950 FBtr0080785 3 1 1 60 2L 15611057 15611076 GAAGTTGGTTACGACTACGA 59 15611016 15611034 CGTTGATAGAGAAGGCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lace FBgn0002524 FBtr0080738 3 1 1 123 2L 15503218 15503302 GGATCCAAGAAACTGATTGAC 58 15503386 15503405 CATCTTCACCCATAATGGTC 58 NA Drosophila melanogaster 50 yuri FBgn0045842 FBtr0080711,FBtr0100613,FBtr0080712 3 3 7 107 2L 15261795 15261813 ATCTACGACGAATCCTCGA 59 15261626 15261725 CGTATCGCATTCAATTTCCA 58 NA Nonspecific Drosophila melanogaster 50 CG4103 FBgn0028925 FBtr0080727 1 1 1 60 2L 15009375 15009394 CTCTCAATGTGATGAATGCT 57 15009334 15009353 AGGACAATATCCCGAAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mol FBgn0086711 FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015 2 5 5 162 2L 14977343 14977361 ATATGAAGGCTTTGACAGG 57 14977068 14977217 ATAAAGCAGAGAATGCCTG 57 NA Drosophila melanogaster 50 Mst35Bb FBgn0013301 FBtr0080681 2 1 1 266 2L 14882569 14882587 ATCATCCAAAGAGGAGAGC 58 14882321 14882339 TATCCTTTCTATGCTCCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33309 FBgn0053309 FBtr0100163 3 1 2 80 2L 14812301 14812319 GAAGTGAACCACTATAGGC 57 14812363 14813398 ACCTATGTATATTCGCCGA 57 NA Drosophila melanogaster 50 Adhr FBgn0000056 FBtr0100187,FBtr0006151 3 2 2 80 2L 14617635 14618079 AATATAGCGAAACTGGCCA 59 14618123 14618141 GGTACTCGGCTTTATCGAC 59 NA Nonspecific Drosophila melanogaster 50 spel1 FBgn0015546 FBtr0080630 1 1 2 99 2L 14364515 14364533 CATTCTTGGAAGAGTGGGA 58 14364595 14364690 AGTGGCAGTCCTTATTATGC 59 NA Drosophila melanogaster 50 He FBgn0028430 FBtr0080616 3 1 1 60 2L 13972472 13972493 GTACACAGATTTCTGACTTCAC 59 13972433 13972452 AATATCTTTGCTGTCGTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ance FBgn0012037 FBtr0080553,FBtr0080552 3 2 2 87 2L 13908583 13908661 TATCTGAGATACTTGGTCTCCT 59 13908708 13908727 CATTGTCGGGATCATATTGG 58 NA Drosophila melanogaster 50 CG33640 FBgn0053640 FBtr0091617 2 1 1 63 2L 13528007 13528028 CTGGCCATATGATGATTAATCG 59 13528050 13528070 GTTATGTCCATCGATGAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tap42 FBgn0051852 FBtr0080466 3 1 1 60 2L 13368687 13368706 TGTTGATGAATTCTACCAGC 57 13368729 13368747 AACCTTCTCCTCATCAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31728 FBgn0051728 FBtr0080453 1 1 1 80 2L 13256708 13256726 CAGGATCAAACGACTTGTG 58 13256848 13256866 TCACTCAACGTCAGTATGG 59 NA DesignNoJunction Drosophila melanogaster 50 ACXC FBgn0040508 FBtr0080413,FBtr0100494 3 2 2 81 2L 12914446 12914466 CAAGTCAATCATCAATGACCG 59 12914506 12914637 CAGGGTGAGTTTAAGTTAATGC 59 NA Drosophila melanogaster 50 ACXC FBgn0040508 FBtr0080413,FBtr0100494 1 2 2 80 2L 12914445 12914465 CCAAGTCAATCATCAATGACC 59 12914505 12914635 GGGTGAGTTTAAGTTAATGCC 59 NA Drosophila melanogaster 50 escl FBgn0032391 FBtr0100626,FBtr0080286 1 2 2 60 2L 11991111 11991131 GATGAGCACGAAGTTAATTCC 59 11991152 11991171 TAGTAGTGCTGAACAAACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6686 FBgn0032388 FBtr0089572,FBtr0089573 1 2 2 61 2L 11985837 11985855 TACAGTGCAGAAGAGTTGG 59 11985733 11985751 TGCCGAAGTTTCTTAACCT 59 NA DesignNoJunction Drosophila melanogaster 50 Or33c FBgn0026390 FBtr0080280 3 1 1 60 2L 11938854 11938873 CATCATTGTCTCCTACATGC 58 11938896 11938914 CAAGTAGTAGACCAGCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 giac FBgn0032368 FBtr0080268 1 1 1 97 2L 11610907 11610986 AAACTTCGATGGATTGCGA 59 11610828 11610846 CACTGTAGCTCTGAGTACG 59 NA Drosophila melanogaster 50 CG14930 FBgn0032366 FBtr0080245 2 1 1 95 2L 11521185 11521203 TCTGGAGTTCGTAGATGGT 59 11521046 11521126 CTTGCCAAAGTATAAGCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33695 FBgn0052831 FBtr0091683 1 1 5 219 2L 11278275 11278293 AATTTGTTGTTCCACCGTG 59 11278636 11278654 TTAGGCTGATCTTGGTCAG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Gyc32E FBgn0010197 FBtr0112856 2 1 2 82 2L 11142406 11142784 CCATATTCGCGACATTTGC 59 11142342 11142363 CAAAGACACGTTGATGATATGG 59 NA Drosophila melanogaster 50 aub FBgn0000146 FBtr0112793,FBtr0080165 2 2 2 83 2L 10999440 10999525 GACTTTAGGACGTTGAGGG 59 10999375 10999393 CTTGTTGAACATGCGAAGG 59 NA Drosophila melanogaster 50 CG6729 FBgn0032296 FBtr0080119 3 1 1 82 2L 10742716 10742735 GAACACTAAGGATCCAAACC 58 10742595 10742613 CATAGTTCAAGCTCTCGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG7384 FBgn0032262 FBtr0080135 1 1 1 60 2L 10509502 10509520 CATACTCCTAGTTTCGGCG 59 10509245 10509263 AATCGTGCTATTCTCCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34367 FBgn0085396 FBtr0112592 2 1 1 137 2L 10348762 10348781 CACCACATAATCACAATCCG 58 10348181 10348662 TTATAGCAGCTGCGTACTG 59 NA Drosophila melanogaster 50 CG4839 FBgn0032187 FBtr0079944,FBtr0079943 1 2 2 155 2L 10151645 10152707 CGAATAGTCAAGATCAAATGGC 59 10152822 10152841 CGTCCTTTGCAATAGATTCG 59 NA Drosophila melanogaster 50 CG4619 FBgn0032166 FBtr0079883 3 1 1 60 2L 9939759 9939779 CAAGTCAAAGATGAACGAGTG 59 9939800 9939819 TCTTTACAGGATCCAGACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nAcRalpha-30D FBgn0032151 FBtr0079913,FBtr0100236,FBtr0079916,FBtr0079914 1 4 6 60 2L 9825635 9825653 AGGTTAAGTTCGGACTGAC 58 9819312 9819330 AGAAGCTGATTCTTCTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG4382 FBgn0032132 FBtr0114535 1 1 1 80 2L 9599743 9599763 CGATGATTTCATGAAGGTACC 58 9599625 9599704 CTTTGGAGAATGGATAAAGCTG 59 NA Drosophila melanogaster 50 CG9483 FBgn0032072 FBtr0079738 1 1 1 60 2L 8866962 8866980 CGGACTTAGTGTGATCCTG 59 8867001 8867022 GGTGTAACCTATAATGATCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17834 FBgn0028394 FBtr0079686,FBtr0079689,FBtr0079687,FBtr0079688 3 4 4 70 2L 8536210 8536229 CTGGGAAGATTTCTACTGGA 58 8536262 8536905 GATTGTAGTTGGCGATGGA 59 NA DesignRelaxed Drosophila melanogaster 50 Btk29A FBgn0003502 FBtr0079616,FBtr0112836,FBtr0079617 3 3 6 168 2L 8298110 8298128 TCGATGGTTTGAGTTGACC 59 8284050 8284128 TTGGAACGGATAACCATCC 59 NA Drosophila melanogaster 50 Acp1 FBgn0014454 FBtr0079500 2 1 1 115 2L 7741354 7741490 AACAGCACCATGAAATTCG 59 7741257 7741275 GTGTAGGACAGTCCATGTC 59 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13796 FBgn0031939 FBtr0114496,FBtr0079504,FBtr0079503,FBtr0079505 3 4 4 82 2L 7728553 7728574 CCTTACTCATATTACCATTGGG 58 7728428 7728510 TCATACCAACGTGATCCTC 58 NA Drosophila melanogaster 50 CG33296 FBgn0053296 FBtr0079509 2 1 1 104 2L 7714975 7714994 GTTCTTGTCTAGTGCAAGTG 58 7714821 7714908 AGTTGAGTTGCAGTCAGAG 59 NA Drosophila melanogaster 50 CG5973 FBgn0031914 FBtr0079446,FBtr0079448,FBtr0079447 3 3 3 129 2L 7444739 7444758 CTGATCTCCCATATTGAGGC 59 7444849 7444935 TGTCAGCCAGTTCATAATCC 59 NA Drosophila melanogaster 50 CG9550 FBgn0031826 FBtr0079286 2 1 1 72 2L 6497916 6497934 TATCAAATGGTCGAGACCC 58 6498024 6498042 GGAACAAGTCCTCATAACG 57 NA DesignNoJunction Drosophila melanogaster 50 CG34180 FBgn0085209 FBtr0112373 1 1 1 64 2L 6060734 6060752 AAGCATATGCAGCTTTCCA 59 6060780 6060798 TAATCACGGCCTGTATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7371 FBgn0031710 FBtr0079129 1 1 1 80 2L 5522670 5522743 AAGAATCGATACACAGCGG 59 5522608 5522627 AAATAGGTATTCCCGACAGG 58 NA Drosophila melanogaster 50 qtc FBgn0028572 FBtr0100263,FBtr0100259 2 2 7 99 2L 5068385 5070107 GAACATACGCACCATTTATCG 59 5070168 5070186 GAAGATAGCGCTCTTGAGG 59 NA Drosophila melanogaster 50 CG9121 FBgn0031675 FBtr0079032 3 1 1 246 2L 5048821 5048839 CTCAGATCGAATTGCACAC 58 5048522 5048540 GAAGATACCTTTCCTGCAC 57 NA DesignNoJunction Drosophila melanogaster 50 Trip1 FBgn0015834 FBtr0079053 2 1 1 213 2L 4967052 4967071 AAATTACGTCGATGTTGTGG 58 4966803 4966821 TCCGAATCGAACAATTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 betaggt-I FBgn0015000 FBtr0078991 3 1 1 103 2L 4945960 4945978 GCTCCGATTCCTTAATCTC 57 4946102 4946120 ATGAGTTTAGCACATCCAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG2950 FBgn0031637 FBtr0077411,FBtr0077409,FBtr0077410 2 3 3 87 2L 4845309 4845327 CAAACCGACCAAGATTCCT 59 4845145 4845259 CTTGATGCCCATTACTTTGC 59 NA Drosophila melanogaster 50 CG3964 FBgn0031574 FBtr0077501,FBtr0077502 2 2 2 111 2L 3865422 3865505 CATCATCAAGAACACCACC 58 3865580 3865598 GAACGATCCGGGTATATGG 59 NA Drosophila melanogaster 50 CG2816 FBgn0031564 FBtr0077536 3 1 1 123 2L 3703589 3703607 AACGAGTATGAGGTCTGAG 58 3703808 3703879 CAGGCATAGTTTCACTCTC 57 NA InUTR Drosophila melanogaster 50 E23 FBgn0020445 FBtr0089981,FBtr0089980,FBtr0089979 3 3 3 266 2L 3337718 3337736 AGGAGGAGATCTTCTTCCC 59 3337406 3337488 CAGAAGTGGGTTCATCCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG33281 FBgn0053281 FBtr0077584 2 1 1 177 2L 3324849 3324867 TTGTGTCTCATGTGGATGG 59 3325063 3325134 AAATGCCGCGAATATTGTC 59 NA Drosophila melanogaster 50 CG3347 FBgn0031513 FBtr0077579 2 1 1 102 2L 3270743 3270761 TTTACCCAATATGCCAGCA 59 3270966 3270984 GCTCGGACTACGATATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG3123 FBgn0031465 FBtr0077723 3 1 1 60 2L 2824615 2824636 GGCTGTTTATCTACAGAAAGAG 58 2824576 2824594 GGTCGCATGTAAATATCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 colt FBgn0019830 FBtr0077734,FBtr0077732,FBtr0077733,FBtr0077731 1 4 4 65 2L 2769055 2769073 CTATACAAGGAGGGTGGAC 58 2769008 2769026 CAAATCCCTGAGCATTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9967 FBgn0031413 FBtr0077799,FBtr0100648 2 2 2 123 2L 2309693 2310134 TTTCCTCAACGATTACAGC 57 2309588 2309606 CTCCGGAGGATTATCATCC 58 NA Drosophila melanogaster 50 chinmo FBgn0086758 FBtr0077879,FBtr0077877,FBtr0077880,FBtr0077878 2 4 4 103 2L 1690666 1690684 AATGGAACAGTTTCTCGTC 57 1690751 1694237 TTTGAATACTACGCCATCG 57 NA Drosophila melanogaster 50 CG18131 FBgn0031343 FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934 2 4 6 63 2L 1500147 1500167 GCCAGCTTATATCTAATGACC 58 1500036 1500123 GATATGTTGACTTGAGTGGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG5556 FBgn0031332 FBtr0077948 3 1 1 60 2L 1352713 1352732 CTATTGCATCTTCGATCTGG 58 1352616 1352635 GGCCCTCTTATAGACATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3876 FBgn0031284 FBtr0078039 2 1 1 60 2L 819064 819082 CATTTACCACTCCGTTTGG 58 819022 819040 GGATGTGTTCCCGATAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089431,FBtr0089436,FBtr0089435 2 3 10 116 2L 111013 111031 TGGAAGACACTTAACCTGC 59 111110 112701 AAACATGATACCCTGGTCAC 59 NA Drosophila melanogaster 50 Tak1 FBgn0026323 FBtr0077319 2 1 1 117 X 20393466 20393543 AGATCTACAAGGGTGAACG 58 20393367 20393385 ACTATGTACTGCATCGACG 59 NA Drosophila melanogaster 50 CG33498 FBgn0053498 FBtr0089611 1 1 1 212 X 20096835 20096935 TGATGGCCATAGTTGAGTG 59 20096246 20096264 TGTAGTCACCAGAGGTCTC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG32556 FBgn0052556 FBtr0074477,FBtr0074478 2 2 2 94 X 17568970 17569361 GATTACCTGATGACCAGGG 59 17568894 17568912 GGATAACTGGATGTGGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9723 FBgn0030768 FBtr0074376 2 1 1 90 X 16548229 16548248 ACAATCTGCGTTTGATTCTG 59 16548091 16548176 CGATAGCAGATCAGGAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF-2alpha FBgn0004925 FBtr0074300 3 1 1 107 X 16339898 16340218 TCTATGTAATGACCACATCCAC 59 16339812 16339830 TGAACTCTCCATCGTACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pis FBgn0030670 FBtr0074059 1 1 2 60 X 15597113 15597227 CTTTAACCAAACGCATTGC 58 15597071 15597090 CACAATATCGGCAGATAACC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG32625 FBgn0052625 FBtr0073839 3 1 1 154 X 13650530 13650617 TGAACATATCATCAAGTGCC 57 13650395 13650413 TCTCACAGTGGATATTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12177 FBgn0030510 FBtr0073846 2 1 1 80 X 13572778 13572898 ATATACACATTAACTGGCGC 58 13572717 13572735 GGTTGAGCATGGTAATTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG18292 FBgn0030269 FBtr0073437 1 1 1 71 X 11032639 11032657 TCATCGCAGCTAAAGTACC 59 11032692 11032710 GATATTGGCCGAAGTTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0071296,FBtr0112965,FBtr0071294,FBtr0071298,FBtr0071295,FBtr0071297 1 6 6 87 X 9008595 9008676 ACGAGGATGAGTTTGAACG 59 9008727 9008745 CTTGTGGTCGAGACTTGAG 59 NA Drosophila melanogaster 50 l(1)G0193 FBgn0027280 FBtr0071130 1 1 2 81 X 7837250 7837724 CCATGATAGTGTCTACCGA 57 7837187 7837207 GCTATATCCGCATATAGTGAG 57 NA Drosophila melanogaster 50 RpS6 FBgn0004922 FBtr0071136,FBtr0071137,FBtr0071135 3 3 3 112 X 7794185 7794203 CTGGTCGTCTTGAAGAAGG 59 7794091 7794109 CTCAAGTTGTAGAGCTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab39 FBgn0029959 FBtr0071072 3 1 1 133 X 7629366 7629812 GAGTTATCCGATCCCACAG 59 7629909 7629927 TAGTAGGACTTGGTGATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ct FBgn0004198 FBtr0114613 2 1 3 91 X 7522897 7526805 TCGACAAAGTAATACTCCCAC 59 7539842 7539860 TAGCTGCTCTTTGAGTGTG 59 NA Drosophila melanogaster 50 CG14434 FBgn0029915 FBtr0071040 2 1 1 60 X 6746414 6746433 CTCCCAATTGGTCTACTACG 59 6746373 6746392 GTTGAACTTGGAAAGCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lag1 FBgn0040918 FBtr0070937 3 1 2 81 X 6160490 6160510 AACTACAAGGACCTCATATGG 58 6153747 6160447 ATATCCAGAAACGCTCCAG 59 NA Drosophila melanogaster 50 kirre FBgn0028369 FBtr0070560,FBtr0070559 2 2 2 87 X 3025864 3025960 ATCAAACGGATTTCTCGGA 58 3026008 3026029 CGTCCTTAAATAGGGATTACCA 59 NA DesignNoJunction Drosophila melanogaster 50 msta FBgn0053548 FBtr0070422 2 1 2 71 X 2101619 2101637 TCACCCGGAATATCTTCCT 59 2100496 2101584 CAGTATTGTCGTGACACCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3638 FBgn0026875 FBtr0070248,FBtr0070246,FBtr0070249,FBtr0070247 1 4 4 88 X 1117713 1117731 TTATTTGGCCTCCAGTGTG 59 1117575 1117661 CATAGGGACTTCTCATGCC 59 NA Drosophila melanogaster 50 mod(r) FBgn0016038 FBtr0089725,FBtr0089726 3 2 4 187 X 516160 516242 CCAGGTGGAGATTATATCAAGAG 59 516389 516482 CAATCTGAAGAAGCTCCCT 58 NA Drosophila melanogaster 50 CG3038 FBgn0040373 FBtr0070107,FBtr0070108 3 2 2 228 X 139376 139459 AAAGAGAACTCTTAGCCGT 58 139166 139185 TAGTCCTCGATGAAATTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41489 FBgn0085650 FBtr0114094 1 1 1 70 U 1939559 1940136 CAAGATCGAGAGCGAAGAG 59 1940170 1940188 AAGAAGCACATAGGCTAGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40203 FBgn0058203 FBtr0113833 3 1 1 168 U 448295 452481 TCAGCAAACTTGTGATGGT 59 452613 452631 AACTCGATCTTAGTGCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF4G FBgn0023213 FBtr0089243,FBtr0112904 1 2 2 84 4 941816 945718 CCTATCACTGATGAAACGGA 59 941751 941769 GATGGGTCTGATTAGGTGG 59 NA Drosophila melanogaster 50 bxd FBgn0020556 FBtr0083343,FBtr0083344 2 2 4 93 3R 12571211 12571230 CAATATGCTTCGGTAATCGT 58 12570416 12571155 ATGGGAAGTGATAATGTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1907 FBgn0039674 FBtr0085447 3 1 1 193 3R 25445364 25445453 CTAGACTTGGTCAAGACCC 58 25445610 25445628 TTCAGATACGTGTACATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp97E FBgn0039465 FBtr0085082 3 1 2 105 3R 22788173 22788897 TTCTTCAGCTTCACTGAGG 59 22788086 22788104 AATAATCGTGCGGAAAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 cav FBgn0026257 FBtr0084557,FBtr0084559,FBtr0084558,FBtr0084556 1 4 4 60 3R 20048196 20048275 GAGAATAACCGAGGAGGAC 58 20048299 20048317 ACAAAGCTCCTTTACCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10208 FBgn0039118 FBtr0084461 1 1 1 93 3R 19599523 19599608 TAATAAACGTTATCGTGCCC 58 19599449 19599467 ATCACCCTCTTGCATTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hmx FBgn0085448 FBtr0112715 1 1 1 178 3R 13385915 13391194 GATTGGGTTTCATATCGCAG 59 13392859 13392877 ATTATTGTTGTTCGGGCTC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG34035 FBgn0054035 FBtr0100090 2 1 1 191 3R 13238976 13239055 CAGATTATGAGTTGACCATCAC 58 13239734 13239753 AAACAACTTCCTCCGTATCC 59 NA DesignNoJunction Drosophila melanogaster 50 mRpS10 FBgn0038307 FBtr0083053,FBtr0113237 3 2 3 288 3R 11055460 11055538 CAGGCTATAAAGACGCTCC 59 11055859 11055877 AGATATGCACCGACTTCAG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG4203 FBgn0038300 FBtr0083048 1 1 1 60 3R 11036606 11036625 AAAGGAAAGCATGAACATGG 59 11036647 11036666 GATGTCGGGTATCTTACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yellow-e3 FBgn0038150 FBtr0082759 1 1 1 160 3R 9229847 9229865 AATCGTGTTTGACTCCCTG 59 9229640 9229723 GAAAGTACAGAAAGCGGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG8863 FBgn0038145 FBtr0082751,FBtr0082754,FBtr0082753,FBtr0082752,FBtr0082755 2 5 5 219 3R 9210100 9210118 TATCAGGCATGAGATGACC 58 9210301 9210409 CTTGGGATCAAAGTCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14394 FBgn0038079 FBtr0113228 1 1 6 298 3R 8521124 8521858 ATGAGATGAAGGCAATGGA 58 8522541 8522562 GGATATTATGAACACGACTACC 58 NA DesignNoJunction Drosophila melanogaster 50 Sbf FBgn0025802 FBtr0082530,FBtr0082529 3 2 2 84 3R 7619363 7619450 TCCAATAGTATTATGGGCTCAC 59 7619300 7619319 TGACACCTATTTCCAAAGCA 59 NA Drosophila melanogaster 50 CG4089 FBgn0037838 FBtr0082281 3 1 1 299 3R 6642322 6642340 GAGCAAGTTCTATACAGCG 57 6642659 6642735 GAATCTCATTGGATCGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG8358 FBgn0037727 FBtr0082081 3 1 1 60 3R 5502341 5502359 GCTTTATCAATCCATGCGG 59 5502382 5502460 CTCACTGAAGTTGTTAGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9492 FBgn0037726 FBtr0082100 1 1 1 80 3R 5496612 5496631 TCTACTCCAATCGCATTCTC 59 5496463 5496569 AGATTTCATCGTCTGCTGG 59 NA Drosophila melanogaster 50 CG11984 FBgn0037655 FBtr0082008,FBtr0082009,FBtr0082007 3 3 3 101 3R 4838553 4838574 GCTGATTTCCTTTCTGATATCC 58 4838074 4838492 TAACTAGCAAGAACAAGCCT 58 NA DesignNoJunction Drosophila melanogaster 50 Xe7 FBgn0010772 FBtr0078729,FBtr0078728 1 2 2 95 3R 1493795 1493813 GTGATCCGTACCGAAAGAG 59 1493659 1493738 CGAACTGAACATATCCTTCGA 59 NA Drosophila melanogaster 50 Dip2 FBgn0040466 FBtr0078893 3 1 1 61 3R 470787 470910 TACTACAATTGACGCAGTCC 59 470745 470763 CAATGGAAGATTCCTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33771 FBgn0053771 FBtr0091772 3 1 1 76 3L 22642564 22642639 AAGTCAACTCTTTGTTACCG 58 22642677 22642696 TGTTAGCTATGGTTATCGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11489 FBgn0025702 FBtr0112914,FBtr0078496 3 2 2 88 3L 22272065 22272084 ATATTTGACAACCGGTTTCG 58 22272134 22272216 TTCTCATCTTTGAGATCCCG 59 NA Drosophila melanogaster 50 eRF1 FBgn0036974 FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177 3 6 6 81 3L 20344765 20344786 TGGAGATTATCACGGATAAGTC 59 20344828 20345922 TTGTAGCGTAAGATACCGC 59 NA Drosophila melanogaster 50 CG34254 FBgn0085283 FBtr0112448 2 1 1 62 3L 18673582 18673600 GAGCAGTAAACAATCCGAC 58 18673626 18673697 CAAGGACTAGATGGCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32187 FBgn0052187 FBtr0075169 1 1 1 117 3L 17799161 17799179 AACAGGACCTAAAGATGCC 59 17798938 17799080 TTCAGGAATGTTAGCTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 roq FBgn0036621 FBtr0075423 1 1 1 93 3L 16367764 16367974 TTCAATGCCAATAAGCAGC 59 16367689 16367707 TCATTCCACTATCGATGCC 59 NA Drosophila melanogaster 50 CG12355 FBgn0040805 FBtr0113333 1 1 2 75 3L 15487705 15487724 CAATAGGAAGATATGCCGTG 58 15486664 15487668 CGATCTAACCATTTGTACCA 57 NA DesignNoJunction Drosophila melanogaster 50 Acp70A FBgn0003034 FBtr0075836 1 1 1 106 3L 13294755 13294773 ATTCTTGGTTCTCGTTTGC 58 13294843 13294926 ACTTATCACGAGGATTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32086 FBgn0052086 FBtr0076147 2 1 1 88 3L 11576401 11576420 CAAGTGGACTTTATGGATCG 58 11576281 11576299 ACACCGAAAGTTATGTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6216 FBgn0036139 FBtr0076220 3 1 2 192 3L 11143173 11143247 AAATGTGTTGTGGCAAGAC 59 11138519 11138538 TTATTTCGTTGATGGCTGAG 58 NA Drosophila melanogaster 50 CG33703 FBgn0053703 FBtr0091691 3 1 1 102 3L 9505330 9505348 CTTGAATGCTACATGTCCG 58 9505192 9505210 CATGTAAACACCGTTTGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG16986 FBgn0035356 FBtr0072930 2 1 1 68 3L 2600896 2600914 ATTCGCTAAACACATCACC 58 2600946 2601025 TTGACCTTCTGTAGGTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cht2 FBgn0022702 FBtr0072795 2 1 1 102 3L 1753509 1753527 ATCATGTGCTACGACTACC 58 1753298 1753446 CAATGGAGAATTTCACACTCAG 59 NA Drosophila melanogaster 50 snoRNA:Psi28S-1175a FBgn0083005 FBtr0113527 2 1 1 74 2R 18494649 18494668 GGCAGATTAAATGATGAGCA 58 18494705 18494723 GTGTTTCTGAAGCATCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11073 FBgn0034693 FBtr0071797 3 1 1 60 2R 17981217 17981235 TGTGATTGCTTGGGATCTG 59 17981175 17981196 CTCAGCCTGATCCTTATTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6393 FBgn0034685 FBtr0071752,FBtr0071751,FBtr0071753,FBtr0071750 1 4 4 68 2R 17956172 17956254 AATTGAATTCCCAGCAGTG 58 17956286 17956304 ATGTACTGGTGGAATTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30289 FBgn0050289 FBtr0071697 1 1 1 100 2R 17408612 17408690 GTACTCAGATTATGTTAGGCC 57 17408532 17408551 GACCATATTCTGTTTCACCC 58 NA Drosophila melanogaster 50 CG15653 FBgn0034578 FBtr0071545 2 1 1 217 2R 16947878 16947898 GCTGTGATGTACATGAAATGG 59 16947624 16947699 GTTCCTTTATCCTTGCTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9236 FBgn0034558 FBtr0071516 2 1 1 114 2R 16768652 16769708 TATGATTTCGATCAGGACGG 59 16769785 16769803 TTACCTTGTCGGCAATCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Gr57a FBgn0041240 FBtr0086241 3 1 1 90 2R 16573353 16573371 GTCGAATCCCTAATGTCGT 59 16573226 16573299 ACAAACCGATAACTTTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10073 FBgn0034440 FBtr0086523 1 1 1 82 2R 15270490 15270559 TAACACAGAGGCTTATGCC 59 15270605 15270623 CATTGCTCTCCGTATAGCT 58 NA Drosophila melanogaster 50 resilin FBgn0034157 FBtr0087025 3 1 2 217 2R 12669072 12669692 TATTGTGGAGTATGAAGCCG 59 12669872 12669890 CACTAGGTCCCAAATCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10265 FBgn0033990 FBtr0087421,FBtr0087422 3 2 2 86 2R 10881076 10881094 TACATAGTAACGCCGATCG 59 10880925 10881026 GATGTGAATCTCCTGTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7639 FBgn0033989 FBtr0087423,FBtr0087424 2 2 2 82 2R 10876490 10876508 GGCCAATGATCTACAACTG 58 10876365 10876444 TGCTGAAAGACATTTCAGG 57 NA Drosophila melanogaster 50 CG12853 FBgn0040747 FBtr0087406 2 1 1 74 2R 10821196 10821214 CAAGGGTGCTAAGAAAGGA 59 10821252 10821270 TTCGATTCGGAAGTCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 BEAF-32 FBgn0015602 FBtr0087442,FBtr0087441 3 2 2 60 2R 10659450 10659469 GATTAGCGAGGACATTAAGG 57 10659490 10659510 TATAGGACTATAGCACAGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tra2 FBgn0003742 FBtr0089617,FBtr0089620,FBtr0089618,FBtr0089621 2 4 7 82 2R 10491538 10491556 TATAAACACAAGCGATCGG 57 10490992 10491492 TAATCGTAGTCAGACCTGC 58 NA Nonspecific Drosophila melanogaster 50 CG17574 FBgn0033777 FBtr0113077,FBtr0113078 2 2 4 226 2R 8739084 8742604 GGATGTGATTGAAGCAATCAG 59 8738373 8738393 AGGCTATAGATAATCCAACCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13157 FBgn0033732 FBtr0087925 3 1 1 111 2R 8304374 8304676 GATGCTATTGATGCCAAGC 59 8304751 8304769 CTGAACTTTCACGACTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8407 FBgn0033687 FBtr0087985 3 1 1 61 2R 8041214 8041411 AATACTCATCGAACTACGAGC 59 8041432 8041452 GAACTTCTTGTCCATGTTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34228 FBgn0085257 FBtr0112421 1 1 1 106 2R 7539478 7539496 GTAACGCCGTTTACATCAC 59 7539566 7539652 TATGGATGGACTGTATGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 luna FBgn0040765 FBtr0088210 3 1 1 213 2R 6870976 6877148 CAAAGAACGCATACAGGTG 59 6870781 6870799 ATGGCCCTGCTTAAATCTC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 cag FBgn0017414 FBtr0088239 3 1 1 75 2R 6781293 6781369 GCCAAGAGGTTTAACATTGG 59 6781237 6781255 ACAGACCCTCTTTAATCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or46a FBgn0026388 FBtr0088330 2 1 2 189 2R 6027758 6027868 TGTTATCTGACGAGAGGCT 59 6028077 6028095 ATAAAGAGGAGCGCAATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12128 FBgn0033473 FBtr0088393,FBtr0088394 1 2 2 69 2R 5915095 5915113 ACAAGGCAATAGAACCAGG 59 5915146 5915228 TGCTTTCTACAGCTCTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alc FBgn0033383 FBtr0088624,FBtr0088625 3 2 2 80 2R 5023198 5023275 CTATCGTGTGAACCCACTC 59 5023136 5023154 GCCATCCTTGATAGACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30355 FBgn0050355 FBtr0088726 3 1 1 63 2R 4567041 4567059 ATGTAGAACAAACGAAGCC 58 4566939 4567015 CATCTCATGTCAGTACTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30379 FBgn0050379 FBtr0088851 2 1 1 205 2R 3827495 3828552 ATAAGGCTTCACTGTACGC 59 3828771 3828790 CAACGTGAACAGTAATTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18812 FBgn0042135 FBtr0088937 2 1 3 283 2R 3609632 3609650 CAATGCTAGAAGGCATGAC 58 3607268 3607349 AATCAGATATAGCAAGGCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG1360 FBgn0033195 FBtr0088951 1 1 1 86 2R 3477155 3477173 AATTTGCTGTGGAACTGTG 58 3477027 3477109 CCTACAGGTGGTTATGTAATAGG 59 NA Drosophila melanogaster 50 CG11060 FBgn0033149 FBtr0089045 3 1 1 60 2R 3064598 3064711 GGACATTCAGAATCTAAGTCC 57 3064733 3064751 CAAGCGGTTCTTACTAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp42Ed FBgn0029507 FBtr0086181 1 1 1 83 2R 2898218 2898236 GTAGTCTTCCTGGTAGCCT 59 2898084 2898171 CATGACCACAGAGTACGAG 59 NA Drosophila melanogaster 50 CG17683 FBgn0040002 FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300 2 4 5 80 2R 19470 19547 GTGTAATCACTTCAGTTGAGG 58 19586 19607 CTAAATCAAGGAGATCGTACTG 58 NA Drosophila melanogaster 50 Hr39 FBgn0010229 FBtr0081481,FBtr0081480,FBtr0081479,FBtr0081478 3 4 4 107 2L 21255223 21255241 TAGTTTGGCAGGAACTTCG 59 21255310 21255554 TCTACATCCATGATTTCCTGC 59 NA Drosophila melanogaster 50 CG10561 FBgn0002036 FBtr0081155 3 1 1 281 2L 19114564 19114640 GAGCCAAGTTTGGAATTAGAC 59 19114945 19114963 GTTATCCGCCTGTAGAACC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Catsup FBgn0002022 FBtr0081143 2 1 1 60 2L 19042313 19042386 AGCCGGATTTGGATATGAG 59 19042409 19042428 CTGATAAGAAGAGTTGAGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31821 FBgn0051821 FBtr0080809 2 1 1 132 2L 15901512 15901531 TTTATCCGCTTCATAGAGCG 59 15901346 15901419 GCGGGATTGTATTAATTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ms(2)35Ci FBgn0011239 FBtr0080731 1 1 2 83 2L 15293140 15293219 GATTGCCTTTGTATCTGCG 59 15293266 15293284 TAATGGGTAATCGGAGTGG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 CG33309 FBgn0053309 FBtr0080674,FBtr0100163 2 2 2 295 2L 14810811 14810889 CGATAATAGCCAACGAGAC 57 14811148 14811166 GGTTAAAGGTTTCGAACGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 He FBgn0028430 FBtr0080616 1 1 1 104 2L 13972600 13972797 AATACATAGCAACCGTCCA 58 13972514 13972532 GAAGTGGATTCCGTTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16974 FBgn0032479 FBtr0080489 2 1 1 83 2L 13187087 13187105 TTTCGAGAATCGACAGTGG 59 13186954 13187041 CGATGTACAGTCGTAATCCT 58 NA Drosophila melanogaster 50 Sfmbt FBgn0032475 FBtr0080492,FBtr0080491 3 2 2 111 2L 13172400 13172418 ACCTTTCATCCATATGCCC 59 13172242 13172325 TAACAGAACCAATCCGACC 59 NA Drosophila melanogaster 50 pdm2 FBgn0004394 FBtr0080393,FBtr0080392 1 2 2 108 2L 12680828 12684543 TATCAGACTGCGGAAAGAG 58 12684615 12684633 TCAGAGTCTAGTTCCCTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Cpr30B FBgn0032125 FBtr0079831 3 1 1 61 2L 9543255 9543273 ATGATCACAACGGTTTCGA 59 9543298 9543316 CAACGGTATCTTGATGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sema-1a FBgn0011259 FBtr0110930,FBtr0079691 2 2 3 94 2L 8660492 8660510 CTCTGTAGTCATCGAGGAG 58 8660568 8660659 CTTTGGGTTGATCGTACTG 58 NA Drosophila melanogaster 50 xl6 FBgn0028554 FBtr0079368 1 1 1 93 2L 6919584 6919602 ACGATAAGTGCTACGAGTG 59 6915386 6919527 CTGAATGAGTTGCTTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13983 FBgn0031792 FBtr0079285 3 1 1 127 2L 6264288 6264363 AATGCCTTCTCCAAGATCG 59 6264179 6264199 CTATCCGATTCCTGATTCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 obst-E FBgn0031737 FBtr0079164 1 1 2 117 2L 5765983 5766001 AATCAGTGCTCTATTGTGC 57 5763292 5763310 ACACTCTGTGTAAGAGTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3887 FBgn0031670 FBtr0079000 2 1 1 79 2L 5011326 5011420 TCCTTTACTGCTACTCCTG 57 5011463 5011481 AATTTGCGGATACTTCTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Marcal1 FBgn0031655 FBtr0078992 1 1 1 91 2L 4957676 4957755 GACTGGAATCCTAGCACTC 59 4957810 4957828 TGAGCAATCAGATAGCGAC 59 NA Drosophila melanogaster 50 Or23a FBgn0026395 FBtr0077698 2 1 1 61 2L 2654850 2654922 GCTGTATAGATTACTCGATGTG 58 2654944 2654962 TAAACTGCACCATCATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pi3K21B FBgn0020622 FBtr0078132 1 1 1 152 2L 299903 302028 AGGACAAGTACATTGAGCG 59 302144 302162 CATCCTTTAGCAACCAGAG 57 NA DesignNoJunction Drosophila melanogaster 50 mRpL10 FBgn0031231 FBtr0078124 2 1 1 81 2L 203883 204003 TACAAAGAAGCCTTTCCCTG 59 204045 204065 CGCTGTATATTGATCTTACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14617 FBgn0031191 FBtr0100652,FBtr0100651,FBtr0077352 3 3 5 129 X 21887458 21887783 GATTGCTTCAACAGCTCTG 59 21887875 21887894 TGTTTGAGGAGTAGTTTGGT 58 NA Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077204,FBtr0077206 1 2 8 85 X 21251051 21251069 ATGAAGTCCAGCTTCTACG 59 21251117 21251692 CCAAAGGATCTTAGCCTCTC 59 NA Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074573,FBtr0074575,FBtr0074574 3 3 6 167 X 18301908 18302558 CCTACCAATGCGAGATGAG 59 18286873 18286892 CCAAGGTGTAGTCCATATCG 59 NA Drosophila melanogaster 50 CrebB-17A FBgn0014467 FBtr0074555,FBtr0074556,FBtr0074554,FBtr0112878 3 4 7 142 X 18267444 18267464 CGTACAATAAGATCTTCACCG 58 18269361 18269379 ATCCAATTGCATCAGGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Yp2 FBgn0005391 FBtr0071424 2 1 1 70 X 9946193 9946211 TCAACCTGAACACTTTGGT 59 9946141 9946159 GAAGATGGTGACCTCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297 2 4 6 118 X 9005030 9005125 CGAGCATGGATTTAATCCAG 58 9005449 9005467 GAATCTGTCGGATGAGGTC 59 NA Drosophila melanogaster 50 norpA FBgn0004625 FBtr0070651,FBtr0070650 3 2 4 189 X 4248570 4251077 AACCTGATGAAGCATTGGA 59 4251230 4251248 ACTTGTCGAAGGTGAACTG 59 NA Drosophila melanogaster 50 CG3588 FBgn0025643 FBtr0070548,FBtr0100550,FBtr0070549,FBtr0070547 1 4 4 293 X 2816306 2816324 TTGAGTCCCTTGGAAAGAC 59 2816666 2816684 ATTGGAGCTGATGGAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2658 FBgn0024992 FBtr0070503,FBtr0070502 3 2 2 133 X 2590887 2590966 CTCAGCATGGATTCATTTAACC 59 2590775 2590794 ACAAATTCCTTCACCTCCTG 59 NA Drosophila melanogaster 50 RpL36 FBgn0002579 FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156 1 4 4 114 X 522710 522792 TTGAAGAACATCCAAACCC 57 522614 522632 TATCCTTGGACACCTTCAG 58 NA Drosophila melanogaster 50 CG41012 FBgn0085553 FBtr0113966 3 1 1 126 U 6176480 6176498 GTAATCGGTCCCGTAATCG 59 6176268 6176390 CAATACCGTACCAGGAACC 59 NA Nonspecific Drosophila melanogaster 50 krz FBgn0040206 FBtr0085877 1 1 1 60 3R 27875116 27875135 CGTCTAGCACTCTCATTACC 59 27875075 27875094 TAGTGGACCATAATACCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34362 FBgn0085391 FBtr0112583 1 1 2 84 3R 23876021 23901409 CAAGCAGGAACAATTCCAC 59 23901457 23901475 GAATGGTGTGAATGCTTCG 59 NA Drosophila melanogaster 50 scrib FBgn0026178 FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085019 2 5 7 88 3R 22406736 22415639 CAACTACAGTCAACACCTG 57 22415691 22415709 TTAGGCACTTTAGTCGGAG 58 NA Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0084927 3 6 7 166 3R 21532677 21532695 GACATCAGGTGCTCTACTC 59 21532199 21532547 ATGTTCCAACATATGCGTC 58 NA Drosophila melanogaster 50 CG7059 FBgn0038957 FBtr0084221,FBtr0084219,FBtr0084220 2 3 3 139 3R 18217576 18217650 CACATTGAGGGAATCTCCA 58 18217751 18217771 CGCCTAATATACTCCTGATCC 59 NA Drosophila melanogaster 50 CG13409 FBgn0038926 FBtr0113264 2 1 2 124 3R 17856452 17856547 CATTGTCATATGCTGGTATGC 59 17856348 17856366 GGGTGAAACACCTACTGTC 59 NA Drosophila melanogaster 50 CG7907 FBgn0038887 FBtr0113262,FBtr0113261 2 2 2 106 3R 17231514 17231532 CAAGATCAACGTGTTCACC 59 17231600 17231709 CAACCAAATCCTTGAAGACAG 59 NA Drosophila melanogaster 50 cpo FBgn0000363 FBtr0083534,FBtr0083536,FBtr0100377,FBtr0083535,FBtr0083537 3 5 6 176 3R 13793462 13793481 ACGCCATAATGGAGAATCAG 59 13832726 13832809 CTTCATAGCCCTCATAGGC 59 NA Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082802,FBtr0082801,FBtr0082806 2 3 8 96 3R 9488692 9488710 ATCATCCTCTCGTTATGGC 58 9488769 9491189 GTAATCCTTGAGATCCTGCC 59 NA Drosophila melanogaster 50 SelR FBgn0037847 FBtr0082293 3 1 6 134 3R 6689538 6691232 TTCGTGAAGAAACGTATACG 58 6689423 6689441 GTTCACGAACTCAATGGAG 58 NA Drosophila melanogaster 50 Nmdmc FBgn0010222 FBtr0081996,FBtr0081997 2 2 2 289 3R 4868835 4868854 GAATGTCAGTCTACCGATGG 59 4868498 4868583 GGCGAACTTCTTCAAAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG15594 FBgn0037421 FBtr0078604,FBtr0078603 3 2 2 61 3R 2113813 2113832 CTACAACCATCGCTATAACG 58 2113853 2113874 GAGGATTCGGTTTGTAATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Cat FBgn0010215 FBtr0070038 3 1 1 80 3L 23318919 23319003 ATATGTACAGCTCGAGAAGC 59 23318858 23318876 ACGGAATAACTCCACTTGC 59 NA Drosophila melanogaster 50 CG14084 FBgn0036855 FBtr0074990,FBtr0074989 3 2 2 61 3L 19255133 19255152 AAATGTGCTACATGTTCCTC 58 19255175 19255194 CTTTAGGGTTATCCAGAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trl FBgn0013263 FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704 2 8 9 236 3L 14747639 14750011 TGCTAAAGAATACACCATGC 58 14747422 14747440 GTTGTGGAATCATGTGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 ImpL1 FBgn0001256 FBtr0075843,FBtr0075842 2 2 2 86 3L 13376186 13376204 CTACTATGTAAAGCGCACC 57 13376254 13376272 ATGGGAATGGCCAAATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34241 FBgn0085270 FBtr0112435 1 1 1 71 3L 12121210 12121228 TACGTCTTCAAATCAGCCC 59 12121319 12121337 CTGTAGAACTCCGTGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Atg18 FBgn0035850 FBtr0076693,FBtr0076691 2 2 3 88 3L 8180667 8180921 AGAACATAACTTCCCTGGC 59 8180973 8180991 GTAGATCTTGTCCAGGGTC 58 NA DesignRelaxed Drosophila melanogaster 50 Patj FBgn0067864 FBtr0072781,FBtr0072780,FBtr0072779 2 3 3 113 3L 1800627 1800645 AGTAAGGGACTCCCTAGAC 58 1800782 1800800 GTGTAGTACTTGTGACGGG 59 NA DesignNoJunction Drosophila melanogaster 50 gek FBgn0023081 FBtr0072287 3 1 1 105 2R 19979778 19979875 TCTAGAACAAGTGGATGCA 58 19979691 19979709 ATTATTGCTTAAGCCGTCC 57 NA Drosophila melanogaster 50 CG9875 FBgn0034850 FBtr0072006 1 1 1 95 2R 19245690 19245769 TTCCTGAACAAGACTGCAG 59 19245828 19245846 TTCGAGTTCCAGTTCTGTG 59 NA Drosophila melanogaster 50 CG30389 FBgn0050389 FBtr0071633,FBtr0071632 2 2 3 99 2R 17043171 17043192 GGTCTGTTTATTCTTCATACCC 58 17043019 17043114 CAAACAGATACCCTTATCTGTG 58 NA Drosophila melanogaster 50 betaTub56D FBgn0003887 FBtr0086536,FBtr0086538,FBtr0086539,FBtr0086537 2 4 4 67 2R 15335671 15335690 CTCTACGATATCTGCTTCCG 59 15335623 15335641 ACAAGATGGTTCAGGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsf FBgn0001222 FBtr0110964,FBtr0086782,FBtr0110966,FBtr0110965 2 4 4 60 2R 14018486 14018504 CCAATGACAGCATAAGCAG 58 14018381 14018402 TGATAGGAAATCAGTTCAGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 spin FBgn0086676 FBtr0089593,FBtr0089589,FBtr0089592,FBtr0089590,FBtr0089591 1 5 5 95 2R 12019320 12019339 TTATCTCGGATCTGTTCGTG 59 12019397 12019824 CCACAATGTATCCCAGACC 59 NA Drosophila melanogaster 50 BEAF-32 FBgn0015602 FBtr0087442,FBtr0087441 2 2 2 60 2R 10659449 10659469 AGATTAGCGAGGACATTAAGG 59 10659489 10659509 ATAGGACTATAGCACAGTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cg FBgn0000289 FBtr0112795,FBtr0112794,FBtr0112796,FBtr0087527 2 4 7 97 2R 10064189 10064692 CAAGAACTATCTGCTAGTGGA 58 10064751 10064769 CATTGGTCAACGTATGGTG 58 NA Drosophila melanogaster 50 CG8776 FBgn0033764 FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869 2 5 5 105 2R 8548251 8548272 GCATAAGGTCAACTTCTATAGC 58 8548111 8548185 CAGCATTACCAGAAAGCTG 58 NA Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 1 9 9 87 2R 5738879 5738966 CCGTTAAGGAGATCCATGTC 59 5738811 5738829 ATATCGATGACAGTTCCGG 58 NA Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 1 9 9 90 2R 4568146 4568164 AGATCAAGACCTGCTTGTG 59 4568217 4568299 ATATCACGGTAGTCCATGAC 58 NA Drosophila melanogaster 50 kermit FBgn0010504 FBtr0088813,FBtr0088814,FBtr0088812,FBtr0088811 2 4 4 63 2R 4035571 4035589 TAATCCACGACTTCTCCAG 58 4035526 4035544 GATATGTCAAAGCACTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0089016,FBtr0111061,FBtr0089017,FBtr0089019,FBtr0111074,FBtr0089018 2 6 60 123 2R 3219877 3231794 ACAAGTTAATGTACCTCCCA 58 3219773 3219792 TTTCTTCCATGTAACTTGGG 57 NA Drosophila melanogaster 50 Pect FBgn0032482 FBtr0080440,FBtr0080441,FBtr0080439 1 3 4 103 2L 13208267 13208285 ATCAAATGGGTGGATGAGG 59 13208351 13208430 GTAATGTCATCTCCATGCAC 58 NA Drosophila melanogaster 50 Nos FBgn0011676 FBtr0100488 3 1 10 92 2L 10817138 10822979 GAGTTTACAGAGACGGTGG 59 10817064 10817083 AATGTTCATCTCCACCACAG 59 NA Drosophila melanogaster 50 slmo FBgn0029161 FBtr0079218,FBtr0079217,FBtr0112945 2 3 3 72 2L 6047423 6047441 AACAGATGGTGCTGAAGAC 59 6047369 6047387 TCATAGTAGAGCACCTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31658 FBgn0051658 FBtr0078008 3 1 1 95 2L 811195 811268 GAACTCGAGATTGCTATGG 57 811327 811345 CTGCTTCATCATACATCCC 57 NA Drosophila melanogaster 50 CG11454 FBgn0031224 FBtr0078116 1 1 1 60 2L 143790 143808 AGAAAGTCACCATCAAGCA 59 143832 143850 AGACGACTTTGGTTGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7766 FBgn0030087 FBtr0114595,FBtr0071352,FBtr0071351,FBtr0114596,FBtr0114594 3 5 5 200 X 8996260 8996539 AAACCAATCATGGTGAACC 58 8996078 8996097 CCAATTCCTTGCTATTCGAC 58 NA Drosophila melanogaster 50 Gfat2 FBgn0039580 FBtr0085297 3 1 1 238 3R 24163798 24163816 ATTTCGCTGGTTATGTTCG 58 24163376 24163596 AGCTCCTTGACTTTCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spz FBgn0003495 FBtr0085146,FBtr0085143,FBtr0112834,FBtr0085139 3 4 12 113 3R 22892377 22892853 CCTCTTTAATAGGACGGACAC 59 22892130 22892148 TCATTCCTCAAAGGACGAG 58 NA Drosophila melanogaster 50 beat-Va FBgn0038087 FBtr0082688 3 1 1 186 3R 8669306 8672706 TAATTGACTACCCAATCGCA 59 8669081 8669099 TAAATCGGACTCGTCAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14605 FBgn0037486 FBtr0081602,FBtr0081600,FBtr0081601 1 3 3 80 3R 3044630 3044726 GTATCTGATAATAGCGTTCGTG 58 3044571 3044590 CACAAATCCCACTGTTATGC 59 NA Drosophila melanogaster 50 CG31550 FBgn0051550 FBtr0078685,FBtr0113409,FBtr0078684 1 3 3 245 3R 1314709 1314728 CTAAAGGAGGACAACATTGG 58 1314989 1315100 ACGTGGATTGTTCAAAGGA 59 NA DesignRelaxed Drosophila melanogaster 50 tacc FBgn0026620 FBtr0089955,FBtr0089951,FBtr0089953,FBtr0089949,FBtr0089952,FBtr0089954,FBtr0089950 3 7 7 126 3R 563224 563242 GATACAGCCAAGAAATGGG 58 562961 563040 CCTCCGTATTAGTGTTGGA 58 NA Drosophila melanogaster 50 CG33769 FBgn0053769 FBtr0091770 2 1 1 209 3L 22641078 22641149 GTTGTCATAAAGCAGAGCG 59 22641322 22641340 GTAGACACTTTGGTAGGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11249 FBgn0037115 FBtr0078429 2 1 1 90 3L 21665740 21666030 GATCAAACACCATCTATTGGG 58 21666082 21666100 CTTTACGATCAGGCTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020 2 17 17 87 2L 12723992 12724013 CAAGACCTATCAGATCAGACAG 59 12724061 12724214 TTTGAGCACCTTAATGCCA 59 NA Drosophila melanogaster 50 mt:tRNA:G FBgn0013694 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me18S-U1356b FBgn0082948 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-C3420a FBgn0083988 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG40500 FBgn0069968 FBtr0111197,FBtr0111196,FBtr0111198,FBtr0111199 2 4 4 208 X 22282268 22282286 CAGTCTCAGGGACATTCAC 59 22282912 22282930 TGACACAGATGTGATAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210 1 5 8 85 X 21247686 21250626 ACATGACGCTTATGAAATGG 58 21250674 21250692 AAAGTGGCCATAGAAGGTC 59 NA Drosophila melanogaster 50 Mgstl FBgn0025814 FBtr0077243 2 1 2 104 X 20914129 20914147 TTGTTGAATCCCAGACCAG 59 20914215 20914233 GATTGGAGAGGCTTAGCAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG1304 FBgn0031141 FBtr0077271 1 1 1 60 X 20836221 20836239 GAACTACGTCTTAACCGCT 59 20836179 20836197 AACGGAATTGCCATTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shakB FBgn0085387 FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572 1 5 5 80 X 20644230 20644248 CGCTAATATACAGGGTGGT 58 20643790 20644186 GACGCACTAACCTAAATCG 58 NA Drosophila melanogaster 50 CG33498 FBgn0053498 FBtr0089611 2 1 1 72 X 20096695 20096713 ATTAAGCAGGAGTTCGAGC 59 20096246 20096264 TGTAGTCACCAGAGGTCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14222 FBgn0031043 FBtr0074763 3 1 1 130 X 19516693 19516775 AATAATGGGCTACATCATGGG 59 19516583 19516601 CCTCCAGGAAACTCATGAG 59 NA Drosophila melanogaster 50 CG7889 FBgn0031003 FBtr0074675 3 1 1 262 X 19138595 19138613 ACTATTTGTACTCCCGACG 58 19138900 19138918 AAGTGGGTTCCAGATAGTG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG33253 FBgn0030992 FBtr0074668 2 1 1 187 X 19080234 19080323 GGAGATCAAGGACGTATCC 58 19080474 19080582 TTTGCAAGTATCGCAACTG 59 NA Drosophila melanogaster 50 CG15059 FBgn0030905 FBtr0074585,FBtr0074584 3 2 2 72 X 18153276 18153294 CAGATGCTAGGATCAGTCC 58 18153222 18153240 TTTATCTTGGACCTACCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32557 FBgn0052557 FBtr0074466 2 1 1 297 X 17748761 17749267 TACCTCCAGTCCAAATTCC 58 17748482 17748500 CGATTGGATACTGGGTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 l(1)G0222 FBgn0028343 FBtr0074490,FBtr0074489,FBtr0074488 3 3 3 114 X 17468998 17469093 AGCCCAAGGAAATCATCTG 59 17468902 17468922 TTTGACTGGGATCTTAGTACG 59 NA Drosophila melanogaster 50 CG12996 FBgn0030835 FBtr0074419 1 1 1 139 X 17144638 17144656 GATTAGCAGGAACCTGGAC 59 17144759 17145085 AAATTCGAACTCTGATGGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 baz FBgn0000163 FBtr0074388,FBtr0111000 2 2 2 81 X 17085681 17085699 CGCAGATGCACTTAATGAC 59 17085744 17085829 GGTAGTGTTGGAGACATCG 59 NA Drosophila melanogaster 50 CG9104 FBgn0030800 FBtr0074348 3 1 1 131 X 16777629 16777647 TACCTGAAGATCGTCATGC 59 16777428 16777535 ATAAGGCAGGATCTGTTGTG 59 NA Drosophila melanogaster 50 ppk28 FBgn0030795 FBtr0100474,FBtr0074335 2 2 2 83 X 16701916 16701935 TGCACTTCTACTACATGACC 59 16701979 16702062 CCGTATTAGACAAGAATTCGG 58 NA Drosophila melanogaster 50 CG4756 FBgn0030788 FBtr0074331 2 1 1 61 X 16682608 16682629 GAAACACTTCAAGACAATACCC 59 16682650 16682669 CCATGTACACGAAGAATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8239 FBgn0030683 FBtr0074087 3 1 1 163 X 15643975 15644055 GAATGAAGTTCATCGATTGGC 59 15644180 15644198 TATCGTAGAGTCGGGACAG 59 NA Drosophila melanogaster 50 CG5541 FBgn0030603 FBtr0073958,FBtr0073959 2 2 2 88 X 14944381 14944454 TCTCCTTCAAGCTTGTCTC 58 14944506 14944524 ATCTCTGATTTGGGCTTCC 59 NA Drosophila melanogaster 50 Flo-2 FBgn0024753 FBtr0073954,FBtr0073952,FBtr0073950,FBtr0073953,FBtr0073951,FBtr0073949 2 6 6 78 X 14825993 14826012 ATATTGTACTCGAATCGCTG 57 14826114 14826133 ATTAGGACAATCTCATCGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG1461 FBgn0030558 FBtr0073908 2 1 1 143 X 14157989 14158073 GCCGATGAGATCTATGAGC 59 14158180 14158198 TATGATCCAACCCATTCGC 59 NA Drosophila melanogaster 50 CG33249 FBgn0053249 FBtr0073925 3 1 1 180 X 14124658 14124739 TGGTGGTCTCATCAAACTG 59 14124496 14124514 CATCATGTCCATGGAACTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG1840 FBgn0030351 FBtr0073571 1 1 1 63 X 11782658 11782676 TTCGTGGGTATATGGTTCG 59 11782762 11782780 TTCCAGTGAATGGAGACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33235 FBgn0030307 FBtr0073545 1 1 1 60 X 11381541 11381561 AATAATTCTAGGCTCGGACAG 59 11381501 11381520 CTCATCTTTGCAGAGATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1545 FBgn0030259 FBtr0073395 3 1 1 229 X 10953389 10953408 CAACCATAACTGCAATACAC 57 10951821 10952403 ACAGTACGGATAAATTGGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG12626 FBgn0040851 FBtr0073398 2 1 1 88 X 10931584 10931602 CATCATCGAGGATCTCAGC 59 10931514 10931532 AGTGATCCTTGAAGTCGTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 c12.2 FBgn0040234 FBtr0071321 3 1 1 114 X 9217642 9217660 AGAACATCTATAGGCGACG 58 9217738 9217809 CCATTGAACCTGTACATCG 58 NA Drosophila melanogaster 50 CG17440 FBgn0030120 FBtr0071328 3 1 1 91 X 9162927 9163011 TATTTCAGATTCTGCCGCA 59 9162854 9162873 CATGTTGAGCTCTAGATGCT 59 NA Drosophila melanogaster 50 CG4040 FBgn0030076 FBtr0071283 2 1 1 81 X 8946413 8946492 CACATTCATATCACCCGTG 58 8946537 8946555 ACTTGTCGTTGTTCTTCAG 57 NA Drosophila melanogaster 50 CG33181 FBgn0053181 FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451 3 5 5 83 X 8409419 8409506 TCAAAGGAGTTCCCTATGC 58 8409553 8409571 CAGCAGCAAAGATGAACAG 59 NA Drosophila melanogaster 50 Nek2 FBgn0029970 FBtr0071142 1 1 1 60 X 7785278 7785298 GTGCAATACTACCATCATCTG 58 7785238 7785257 ACTCCATAACAATGTACACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15326 FBgn0029965 FBtr0071149 3 1 1 260 X 7759226 7759244 ACATCTTATAGCACCCTCG 58 7758713 7758731 CAGAGTGGATGTGGTAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1409 FBgn0029964 FBtr0071086 1 1 1 67 X 7752491 7752509 ATAGATACGCACTACCAGC 58 7752540 7752558 TGAATGTAGAAGCTACCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CBP FBgn0026144 FBtr0071053,FBtr0071052 2 2 2 118 X 7235526 7235614 ACTTGTTTAAGGCTGTGGA 59 7235696 7235714 TATCACAGCGAATGAAACG 58 NA Drosophila melanogaster 50 CG18155 FBgn0029945 FBtr0071051 3 1 1 117 X 7223487 7223505 TTCAATTGTATATGGCCGC 58 7223669 7223687 TGTATAGCTATCCACAGGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG4575 FBgn0029920 FBtr0071000 3 1 1 75 X 6844572 6844590 TACGGAAGAATATGGAGGC 58 6844848 6844866 CTCGTAGTATGCGGTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL17 FBgn0029897 FBtr0070982,FBtr0070981,FBtr0070980,FBtr0070983 3 4 4 148 X 6635947 6635965 ATCAATCCCTACATGTCGT 58 6635817 6635835 GAACGCAACATCTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL17 FBgn0029897 FBtr0070982 2 1 4 203 X 6638071 6638090 AAATCAACACGTCGAATTGG 59 6636285 6637104 GTGTTCTTGAAGTGCACAC 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 vanin-like FBgn0040069 FBtr0070879 2 1 1 80 X 6094739 6094757 CCTGCAAGATAGTTTGCTG 58 6094614 6094695 TGGACATAGCTATCTTCCG 58 NA Drosophila melanogaster 50 CG33080 FBgn0053080 FBtr0070845,FBtr0070844 1 2 2 141 X 5604996 5605517 TATTTCTGATCGGCTATGC 57 5604873 5604891 AATTGACCCGATATCACCT 58 NA Drosophila melanogaster 50 CG11473 FBgn0029779 FBtr0070857 3 1 1 74 X 5524057 5524078 CCATTATTGTGGGATTCATCAG 59 5523726 5523744 AGATGTCGTTCAGATTGGA 58 NA DesignNoJunction Drosophila melanogaster 50 RhoGAP5A FBgn0029778 FBtr0070785,FBtr0070784 3 2 2 229 X 5511349 5511367 GTATCCCAGCTTTATGGCA 59 5510964 5510984 GAGGAGAGCATAAAGATCTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12730 FBgn0029771 FBtr0070780 2 1 1 89 X 5411841 5411859 ACTCTCCCTGGATATTGGA 58 5412111 5412129 TAGTTTCCATAGGCCTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 TrxT FBgn0029752 FBtr0070755 3 1 1 115 X 5205305 5205323 ACAACGTTAATGAGGTGTC 57 5205141 5205159 ACGTCTGTTGAATGATGAG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12682 FBgn0029729 FBtr0070716 2 1 1 61 X 4720565 4720583 GTCTATAGGCGGAATCGTC 59 4720608 4720626 AACTGTCTAATGGGCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12179 FBgn0025388 FBtr0070695,FBtr0070694 3 2 2 165 X 4525985 4526061 CAGCCAATACTCGAGTTAGG 59 4525839 4525858 TGTCTGACCTTGTTGAAGAC 59 NA Drosophila melanogaster 50 CG2901 FBgn0029679 FBtr0070605 2 1 1 81 X 3724416 3724437 CACCATCCTTTATCACAATCTG 59 3724477 3724721 TATGAAGCGTCTAGTGATCTC 58 NA Drosophila melanogaster 50 CG13021 FBgn0029669 FBtr0070570,FBtr0070571,FBtr0070572 3 3 3 60 X 3409538 3409556 TGTACGAATCGGTAATCCG 59 3409579 3409598 GGATCCTTCGTCCTTATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32791 FBgn0052791 FBtr0070588 2 1 1 103 X 3413934 3413952 AAAGATCTCGAGGAACGAG 58 3409012 3413867 CCGGATGAAAGTGTATGCT 59 NA Drosophila melanogaster 50 CG10802 FBgn0029664 FBtr0070568 2 1 1 61 X 3377503 3377521 GACAGGGAGTTCAAGTACG 59 3377545 3377564 TGAATGTAAGAGACAGTGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2694 FBgn0024991 FBtr0070482,FBtr0070483,FBtr0070481 1 3 3 103 X 2609385 2609403 GAAACCGACATGAAGACAC 58 2609550 2609568 ATCTCGTTCAGATTCTGGT 57 NA DesignNoJunction Drosophila melanogaster 50 ptr FBgn0003159 FBtr0070404,FBtr0070403,FBtr0070402 1 3 3 89 X 2243030 2243048 GAGTAAGCTCTTGTCCCTC 59 2242892 2242910 TACACCTGACTAGCATCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG3835 FBgn0023507 FBtr0070383,FBtr0070382,FBtr0070381 3 3 3 272 X 2038240 2038324 TTCAAGTTCCTGAACTCCC 59 2038560 2038578 AATGTTGTAGAAGTCCCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG11417 FBgn0024364 FBtr0070212 2 1 1 61 X 1249978 1249996 GAAGGAGCTTGAGCTACTG 59 1250021 1250039 GACTGAAGTGTTGCTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CDC45L FBgn0026143 FBtr0070182 2 1 1 60 X 923240 923258 AAGGAGTTCTTCTCGATGG 58 923198 923217 AAACTATGTCCGCTATGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3703 FBgn0040348 FBtr0070187 3 1 1 232 X 837540 837558 TGGGAACTAGTACTAGCCT 58 836821 837344 AAATGGGAATTGAGTCCGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3706 FBgn0040342 FBtr0070189 3 1 1 64 X 826120 826138 GAAGAGCTATGACGTGGTC 59 826074 826093 AGGTGACCATTAGTTTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13360 FBgn0025620 FBtr0070147 3 1 1 101 X 682698 682717 ATCACTGTGCTTAATCATGG 57 682552 682634 GAAATCCACGAATATGGCA 57 NA Drosophila melanogaster 50 sc FBgn0004170 FBtr0070073 3 1 1 60 X 290483 290504 CCATATAATGTAGACCAATCCC 57 290525 290543 CACGATTTCGTTCTCTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3038 FBgn0040373 FBtr0070107,FBtr0070108 1 2 2 60 X 138968 138986 TATCTGGCTACGTACTGGA 59 138926 138944 ACGTACCACTTATTGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR41379 FBgn0085784 FBtr0114236 2 1 1 83 U 1397486 1397504 CTAGCGGAGTACATCTTCC 58 1397421 1397439 TCAATTATGACTCCCAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40948 FBgn0085541 FBtr0113954 3 1 1 60 U 8664880 8664898 CATATTCGCCTGAAATGGG 58 8664838 8664856 ATATGGTCAAGTGTCACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41564 FBgn0085695 FBtr0114144 3 1 1 78 U 5735662 5735680 TGAACTACTTCGTCAGCTC 59 5735722 5735740 TCTTGTCGAGCTAACTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40207 FBgn0058207 FBtr0113835 1 1 1 80 U 882428 884776 TCACAGCTAACTTGGTTCG 59 884818 884838 TTCCAAAGTCTAGACTCTGTG 59 NA Drosophila melanogaster 50 Asator FBgn0039908 FBtr0089108,FBtr0089109,FBtr0089107 3 3 3 80 4 499216 499235 TTAACAAACTCCCAAGTAGC 57 498701 499175 CTTCGTATACTGTACATCCTC 57 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156 1 8 10 80 4 115558 115579 ACGAGATAACTATGGTTACGTG 59 115618 120041 ATATTATTGCCTCCCGAATCC 59 NA Drosophila melanogaster 50 snoRNA:Psi28S-3405b FBgn0082959 FBtr0113589 3 1 1 69 3R 24427618 24427636 ATAGCAATGTTCGATGTGC 58 24427668 24427687 CGATATAATATGGGCTGGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kek6 FBgn0039862 FBtr0085821 3 1 1 60 3R 27485652 27485673 GAGATCTTCAACAATGAAGAGG 58 27485691 27485712 AGCTAAAGGTGGTATTACTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PH4alphaNE2 FBgn0039783 FBtr0085685 1 1 1 80 3R 26336164 26336183 AAGGGTAACGATCATATGGG 58 26336044 26336122 TATCCACTTGCTCATAACCC 59 NA Drosophila melanogaster 50 Cnx99A FBgn0015622 FBtr0110909,FBtr0085438,FBtr0085437 1 3 4 114 3R 25142527 25142547 CGATATTCTCTTCGACAACCT 59 25142079 25142451 GAATGAGTCCGATTCACGA 59 NA Drosophila melanogaster 50 Doa FBgn0053553 FBtr0113466 3 1 9 81 3R 24728521 24745225 ACTATCTAACAGCAAAGCCC 59 24745268 24745287 CTGTGATGGAGAATGTCTCC 59 NA Drosophila melanogaster 50 Doa FBgn0053553 FBtr0091524,FBtr0091526 1 2 9 124 3R 24746881 24746902 CATCTTGTTCGAACTGTATCTG 59 24746987 24747076 AAAGAGTATGATTGCGTGC 58 NA Drosophila melanogaster 50 CG12516 FBgn0039577 FBtr0085285 1 1 1 60 3R 24129599 24129617 AGTATATGGAATGAGCGGG 58 24129557 24129575 CGAGTAGATTCATCATGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4963 FBgn0039561 FBtr0085266 3 1 1 117 3R 23770106 23770284 CAGTCGAAAGATCTACCAC 57 23770007 23770025 CTTGAAGAACTCGTACGTC 57 NA Drosophila melanogaster 50 CG12879 FBgn0039540 FBtr0085218 2 1 1 60 3R 23520941 23520962 TTCTATTTCATACTGGACCAGG 59 23520983 23521001 CCCTAAGTTTGGAGCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 woc FBgn0010328 FBtr0112857,FBtr0085178 1 2 2 81 3R 23083857 23083875 GTACTACGAGCGGTTTACC 59 23083730 23083813 GACAATGTATTGCGAATCGT 58 NA Drosophila melanogaster 50 TfIIA-L FBgn0011289 FBtr0085155,FBtr0085156,FBtr0085154 2 3 3 92 3R 23081684 23081766 TACGATAAGATCACCAGGTC 58 23081821 23081839 TTTCTGGAACACGTAGTCC 59 NA Drosophila melanogaster 50 spz FBgn0003495 FBtr0085140 2 1 12 142 3R 22892381 22893091 AATCACTTACAGAGGACGG 58 22892130 22892148 TCATTCCTCAAAGGACGAG 58 NA Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100337 2 1 9 160 3R 22699713 22699731 TCAACCACCAGCATATACG 59 22699267 22699591 AGTTAGTTGTCCCAATCTAGC 59 NA InUTR Drosophila melanogaster 50 CG14243 FBgn0039444 FBtr0085035 3 1 1 72 3R 22466075 22466093 ATTGCACCTTTGGTAGAGG 59 22466129 22466147 CCTCATCGTACTGTTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ald FBgn0000064 FBtr0084995,FBtr0084994,FBtr0084999 1 3 6 151 3R 22082687 22082705 AAGAAGGAGAACATTGCTG 57 22081053 22081071 AACCAAACGCCTTAGTAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14354 FBgn0039376 FBtr0084905 2 1 1 83 3R 21641985 21642004 CTATACCAACACGAGGAAGG 59 21642050 21642068 GATCTTCGGTCCCTTACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4774 FBgn0039360 FBtr0084931,FBtr0084929,FBtr0084930 3 3 3 81 3R 21512089 21512109 CGGATATGTTATAGTCCAGGG 59 21511697 21512046 TCCATCCAACAGATCTGTG 58 NA Drosophila melanogaster 50 jigr1 FBgn0039350 FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887 3 6 6 98 3R 21474749 21474768 GTACGATAGGTCAAACAAGC 58 21474829 21474919 CTTATACTGGTGGCATCGT 59 NA Drosophila melanogaster 50 CG6879 FBgn0039222 FBtr0084695 2 1 1 139 3R 20606644 20606665 CGAACGTTATAGTTCAAAGGTC 59 20606762 20606848 GGCTGACATTGTTATTGATCAC 59 NA Drosophila melanogaster 50 CG5728 FBgn0039182 FBtr0084632 1 1 1 81 3R 20156573 20156592 CTAACAGTTTCAGCAAAGCT 58 20156449 20156532 CATTTAAATAGCCTTCGACCAG 59 NA Drosophila melanogaster 50 CG13604 FBgn0039137 FBtr0113275,FBtr0113276,FBtr0113277,FBtr0084509 1 4 4 125 3R 19815591 19815609 ATTTGGATTATGAGCCGGT 59 19815424 19815503 TATTTCCAGTTGTCTGCTCC 59 NA Nonspecific Drosophila melanogaster 50 CG33111 FBgn0053111 FBtr0084529,FBtr0084530,FBtr0100312 1 3 3 120 3R 19633221 19633304 AATTCACAATCTCACCAGC 58 19633119 19633137 GATCTTGAAGAGCTTTCGC 58 NA Drosophila melanogaster 50 CG17379 FBgn0039076 FBtr0113274 3 1 1 92 3R 19231697 19231773 ACTTTGAGACTACCTCGAC 58 19231826 19231847 GTAGAGTTTGCAAACTAGTCTC 58 NA Drosophila melanogaster 50 CG4393 FBgn0039075 FBtr0084430 1 1 1 80 3R 19204906 19204925 GCAGGATTACTTCATCTGGA 59 19204779 19204865 CTCCTCAAAGACATTGTTCAC 59 NA Drosophila melanogaster 50 Irp-1A FBgn0024958 FBtr0084327 2 1 1 80 3R 18548930 18548948 AGTATTTGAAGGCCACTCG 59 18548805 18548886 CCAAAGTTACAGACTCCGT 59 NA Drosophila melanogaster 50 wge FBgn0051151 FBtr0110835,FBtr0084329,FBtr0084328 2 3 3 83 3R 18539680 18539700 TCAATCACATTGGATGGAGAG 59 18539554 18539635 TACCTCGAGGATCGTATCC 59 NA Drosophila melanogaster 50 CG33334 FBgn0053334 FBtr0084194 2 1 1 60 3R 17949905 17949925 ATGAGGAAGATGGAGATAGAC 58 17949946 17949965 TGAGCATTAGATATCTGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 E2f FBgn0011766 FBtr0084118,FBtr0084119,FBtr0084117 2 3 3 202 3R 17449734 17449753 GAGATCAACGTCTTCCTCTG 59 17449364 17449569 GGCGTTTGAAATAATCCCT 58 NA DesignRelaxed Drosophila melanogaster 50 C15 FBgn0004863 FBtr0084111 1 1 1 180 3R 17328256 17328274 TATCCGCATCTCTATCCCT 58 17332879 17332897 GATTCTGGTAGGGATGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17838 FBgn0038826 FBtr0113255 2 1 8 151 3R 16623363 16623381 CTTAATGGCAAGGAGATCG 57 16623566 16624021 GTTTCAAATCCCACGATCC 58 NA Drosophila melanogaster 50 CG31200 FBgn0051200 FBtr0083929 2 1 1 80 3R 16570861 16570879 ATTGTACACCACCAACGAG 59 16570677 16570817 TACCGATTTCCCTGATCCT 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG4323 FBgn0038797 FBtr0083891,FBtr0083892 1 2 2 80 3R 16327409 16327428 AACGCTTGATGGATTATTGC 59 16327293 16327370 CCTTCGATAGATCTCCTAATCTG 59 NA InUTR Drosophila melanogaster 50 CG15685 FBgn0038789 FBtr0113253 1 1 1 84 3R 16165155 16165175 GATAAGCGGTATTTGTTCCTG 59 16165221 16165873 GATGGTGAGGGTAGAACTG 59 NA Drosophila melanogaster 50 CG34286 FBgn0085315 FBtr0112482 1 1 1 60 3R 15541501 15541522 CTTGTTGTAATCGTACTCATCC 58 15541462 15541481 GTTTCGGGTGAATAATTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17752 FBgn0038718 FBtr0083779 2 1 1 82 3R 15437837 15437855 ACTGTTGATCAGCTTCCTC 59 15437901 15437977 TTTGTGGTAGTTGCTTGTG 58 NA Drosophila melanogaster 50 CG7702 FBgn0038638 FBtr0083665,FBtr0083664 2 2 2 158 3R 14496999 14497017 GAAATTCAGTACGCCTGAG 58 14498586 14498604 GAATGTCCTCATGTTGGCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14304 FBgn0038629 FBtr0083639,FBtr0114497 1 2 2 80 3R 14419607 14419628 ATTACTGTGATCTCAATGGAGG 59 14419481 14419566 CGCAAGTTAAGGCAATCTG 59 NA Drosophila melanogaster 50 CG7675 FBgn0038610 FBtr0083582,FBtr0083583,FBtr0083581 3 3 3 130 3R 14205050 14205068 ACAGTCATTATCACAGGCG 59 14204680 14204956 ACGATCTCATCCTTCACTG 58 NA Drosophila melanogaster 50 Rpb4 FBgn0053520 FBtr0100273,FBtr0083604,FBtr0100275,FBtr0100274,FBtr0083603 2 5 5 84 3R 14079003 14079022 AAGGAGACCATAATGTCTGC 59 14078876 14078894 GACACAAATTACCCAGTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7175 FBgn0038584 FBtr0083609 3 1 1 76 3R 14047591 14047668 TGCTTTATCCCATCAAACG 58 14047533 14047551 CAACTGCAGATCTTCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG7218 FBgn0038569 FBtr0083623 1 1 1 117 3R 13988748 13988840 CTGATCATGTTTCAGGCCA 59 13988649 13988667 ACTTCTTGAACACGGATCC 59 NA Drosophila melanogaster 50 CG7655 FBgn0038536 FBtr0083479 3 1 1 74 3R 13508806 13508825 TTTATAGCCTGACGTCATCG 59 13508921 13508939 ACAGAACAATCGACTGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5866 FBgn0038508 FBtr0083440 2 1 1 60 3R 13241764 13241782 GTCTGAATCGCATGATCCT 59 13241804 13241824 AGGATGTGAACCATGATAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pxd FBgn0004577 FBtr0089287 2 1 1 82 3R 12852791 12852809 TTTGATTCCCTGACCAGAG 58 12852855 12852934 AGGAAGTGCTTGATCTGTC 59 NA Drosophila melanogaster 50 CG10349 FBgn0015350 FBtr0083364 2 1 1 184 3R 12705842 12705860 AGGAAGTCCCTACAGTCTG 59 12707239 12708167 GAGCCCGTATTTCTTTATATGC 59 NA Drosophila melanogaster 50 CSN5 FBgn0027053 FBtr0083292 3 1 1 142 3R 12296733 12296751 CGGTCAGATCATGGATCTC 59 12296915 12296934 GTATCAGTTCAATGGTGGAG 57 NA DesignNoJunction Drosophila melanogaster 50 ss FBgn0003513 FBtr0083318 1 1 1 191 3R 12216469 12216487 AGCATTCTAAGGCTGTCTG 59 12205506 12209708 AAATCCATTTAGGGCCTGG 59 NA Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204 1 6 8 163 3R 11782022 11785052 GACTGATGAGGAACAATGG 57 11785179 11785197 TTGATATTGTCGGTTCGTC 57 NA Drosophila melanogaster 50 CG3303 FBgn0038381 FBtr0083200 3 1 1 81 3R 11734592 11734613 ATACCTCTACAAGGTGAATCTC 58 11734652 11734819 CAATTCAAAGAGGTTTCTAGGG 58 NA Drosophila melanogaster 50 CG9590 FBgn0038360 FBtr0083172 3 1 1 61 3R 11612811 11612831 GGCTTAATCAAATCATCGGAG 59 11612854 11612872 TTCAGCCACATTAATGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 stumps FBgn0020299 FBtr0112893,FBtr0082958 1 2 3 113 3R 10418460 10418478 GAATTCTTGCAACGAGACC 59 10418555 10418734 GATTTGCTACTTGTTGGCG 59 NA Drosophila melanogaster 50 CG31533 FBgn0051533 FBtr0082905 3 1 1 60 3R 9981277 9981296 GTAGAGATCCGAATATGTGC 57 9981236 9981254 CCAAATCGTTTCTGTTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rin FBgn0015778 FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082796 3 4 5 61 3R 9476209 9476538 CAACAAGGGTGACTTTGAG 58 9476563 9476581 GCTGATTATCACCGAACTG 58 NA DesignRelaxed Drosophila melanogaster 50 yellow-e3 FBgn0038150 FBtr0082759 2 1 1 60 3R 9229740 9229761 GAATATTTACAGTGAGCCTCAG 58 9229636 9229655 GTGTGAAAGTACAGAAAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 snk FBgn0003450 FBtr0112833,FBtr0082716 2 2 2 83 3R 8866930 8866948 ACAATGTCCCTGTCATCTG 59 8866809 8866884 TGTACTCCTGACATTTGGTG 59 NA Drosophila melanogaster 50 CG6225 FBgn0038072 FBtr0082649,FBtr0113225 2 2 2 81 3R 8484654 8484732 ACTCCTGTGATTAAGTCATACG 59 8484773 8484792 TGCCCAGACTAATCTTTGAG 59 NA Drosophila melanogaster 50 CG18530 FBgn0042207 FBtr0082644 1 1 1 118 3R 8459886 8459968 ATCACTTGAACACAAGTGC 58 8460050 8460068 ATCGAATGGTCTGAACCTG 59 NA Nonspecific Drosophila melanogaster 50 Vha55 FBgn0005671 FBtr0082670 3 1 2 164 3R 8453369 8453387 CAGTACTGTTTCGTAGCTG 57 8451938 8453177 CAGTCTTGTAAGTCAAGCG 58 NA InUTR Drosophila melanogaster 50 CG34402 FBgn0085431 FBtr0112655,FBtr0112654 3 2 3 138 3R 8211982 8212000 CTTCACAGTCTCACATTGG 58 8212102 8212228 ATCTAGCCAGAAATGCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GstD6 FBgn0010042 FBtr0082573 2 1 1 60 3R 8203434 8203452 AGATGGTATAAGAACGCCC 58 8203475 8203494 GAATTCTTGCCAAGTTCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4066 FBgn0038011 FBtr0082566 1 1 1 60 3R 8137162 8137181 GACTTTGAGGATATTGACGA 57 8137203 8137222 TTGGAACATCAGTAACTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Spt3 FBgn0037981 FBtr0082537 2 1 1 63 3R 7843125 7843143 CAAAGTGGAAGCATACCGA 59 7843168 7843188 CTACATTATGTCCAGCTAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12201 FBgn0037970 FBtr0082486 1 1 2 106 3R 7797743 7797816 ACCAGCATAACTCTATTGC 57 7797886 7797904 TAATCAGCACGATGTTCAC 57 NA InUTR Drosophila melanogaster 50 KP78a FBgn0026064 FBtr0082407 2 1 1 60 3R 7175074 7175095 CCAACAGTGGATTTAACTACTC 58 7175035 7175054 TGGGTGTGGTGATATTAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14693 FBgn0037837 FBtr0082300 3 1 2 83 3R 6638919 6639201 CTCGATGACGATCAGATCG 59 6638854 6638875 ATCCTCACAGAATATGGTATCC 58 NA Drosophila melanogaster 50 CG12817 FBgn0037798 FBtr0082243,FBtr0110952,FBtr0110953 3 3 3 121 3R 6050095 6050114 GATGATTTGAGTGAGGAGGA 58 6049685 6049703 AATTGCCTTCACGAATTCC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 knk FBgn0001321 FBtr0082194 2 1 1 83 3R 5948869 5948941 AGGATAACAGATGCAACGG 59 5948804 5948823 ATTCGTCAATCCCTGATAGC 59 NA Drosophila melanogaster 50 CG33784 FBgn0053784 FBtr0091785 3 1 1 101 3R 5894010 5894028 TTGCCGACTTAGTTTACGA 58 5894150 5894169 CATCATTCAGAACCATTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 Fancl FBgn0037781 FBtr0082203 2 1 1 60 3R 5878104 5878122 CCTTGTACAAGTCAAACGA 57 5878062 5878080 AAACGAATCATGGAACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3909 FBgn0027524 FBtr0082172 1 1 1 112 3R 5869713 5869788 TTAGCATTGCCTACAGTCC 59 5869864 5869882 GTGTCCTTCCAATGTTTGC 59 NA Drosophila melanogaster 50 eca FBgn0069242 FBtr0082098 1 1 1 135 3R 5510535 5510553 CAGAACTACCAGCGATACC 59 5510418 5510436 TCTTGAGATGACGCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8301 FBgn0037717 FBtr0082073 2 1 1 98 3R 5410208 5410226 TTCATCCATCTGAAGACCC 58 5410288 5410951 ATAGGATGCAAAGACCTCC 58 NA Drosophila melanogaster 50 CG33936 FBgn0053936 FBtr0091943,FBtr0091942 3 2 4 146 3R 5180565 5180653 GTATGCTATAAGGACTCGC 57 5180763 5180781 TTGTAAACTGGTGACTGTG 57 NA Drosophila melanogaster 50 CG31454 FBgn0051454 FBtr0081870 1 1 1 129 3R 4348686 4348704 AGATCTTCAACAAGGGCTC 59 4348850 4348869 CCAGATTGAATGGCAAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11671 FBgn0037562 FBtr0081829 2 1 1 60 3R 4114154 4114172 CTAAATAACCGGCATGTGC 59 4114193 4114214 GATCAGTGATATAGGACTTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Os-C FBgn0010401 FBtr0081781 1 1 1 130 3R 3804972 3804990 AGGTGAATACGGACAACAC 59 3805138 3805156 AAATTGCACAGATCTTGCG 59 NA DesignNoJunction Drosophila melanogaster 50 Taf7 FBgn0024909 FBtr0114520,FBtr0081756 2 2 2 60 3R 3734791 3734810 ACACAGGTTATTGAAAGGGA 58 3734830 3734851 CTTAAGACTCCAGCATATTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31472 FBgn0051472 FBtr0081747,FBtr0081748 1 2 2 60 3R 3636796 3636814 CTTCTTCACGAACTACGGT 59 3636838 3636856 GGCTACATAGGGATTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14605 FBgn0037486 FBtr0081600,FBtr0081601 2 2 3 99 3R 3044372 3044393 CAACAGGACGATAATAAAGCTG 59 3044111 3044315 CCTTGTTAAAGAAATCAGCAGG 59 NA Drosophila melanogaster 50 CG15180 FBgn0037458 FBtr0081702 2 1 1 216 3R 2433920 2434066 ATTATATGAGGATGCTGGCC 59 2433723 2433741 AAAGCAACCTTGACAATGC 59 NA DesignRelaxed Drosophila melanogaster 50 Osi14 FBgn0040279 FBtr0078606 1 1 1 140 3R 2125767 2125785 GTACTGGTCGTCTAGTGGA 59 2125943 2125961 TCTTCTTGATCTTGCCACG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Osi1 FBgn0037406 FBtr0078588 2 1 1 108 3R 2000062 2000080 GAGAGTCATGGAGGAATCG 59 2000213 2000231 CAAAGTCATCTTCAGGTGG 58 NA DesignNoJunction Drosophila melanogaster 50 RpL13A FBgn0037351 FBtr0078705 2 1 1 132 3R 1450614 1450632 CGTTGTTATTGATGGTCGC 59 1450728 1450746 GTTCCTGTAGAAGTGTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1427 FBgn0037347 FBtr0078702,FBtr0078703 2 2 2 83 3R 1427573 1427642 GTATAGCCTGCAAACTCGT 59 1427687 1427707 GTTGTGCCTCTAGTAAGTCTC 59 NA Drosophila melanogaster 50 Tim17a2 FBgn0037307 FBtr0078820 1 1 1 60 3R 1084453 1084471 GCTACGATTTATGCATCGG 58 1084411 1084429 GGTCAACAGTGATTAGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 UbcD6 FBgn0004436 FBtr0078849 2 1 1 89 3R 776249 776267 TGGTGGAATATGCTTGGAC 59 776116 776196 CTCAGCAGTGACTGTATGG 59 NA Drosophila melanogaster 50 CG34306 FBgn0085335 FBtr0112502 3 1 1 60 3R 753592 753611 TCACCCATCATTCAGTAGGA 59 753632 753652 AGTTTCTCTGACGAAGAAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nep2 FBgn0027570 FBtr0078891 3 1 1 81 3R 549287 549307 TTAGCATGGACTACATCATCG 59 549092 549246 GACTGGTCCAGATCTATAAGC 59 NA Drosophila melanogaster 50 CG14647 FBgn0037244 FBtr0078920 3 1 1 110 3R 227108 227128 CACCAATCTTAACTACTGCTG 58 227200 227333 TTTGCACCTTCCATATTGG 57 NA Drosophila melanogaster 50 CG9795 FBgn0037234 FBtr0078907,FBtr0078906,FBtr0078905 3 3 4 100 3R 151096 151114 ATCAATCCGGGAATTCCAC 59 151177 151431 CAATTTCTCAAGGGTACGGA 59 NA Drosophila melanogaster 50 CG9766 FBgn0037229 FBtr0078980,FBtr0113191,FBtr0078979 1 3 3 184 3R 95720 95738 ATTCTGCTGAACAAGAAGG 57 95495 95572 CTAGCGTTCATAACCACTG 57 NA Drosophila melanogaster 50 Eip63F-2 FBgn0004911 FBtr0073162 2 1 1 60 3L 3935239 3935260 GCAACTTAAGTTAGTTATCGGC 59 3935281 3935299 TTAAGACCCGGTTAAGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11133 FBgn0037205 FBtr0078559 3 1 1 60 3L 22896931 22896951 GATTTGACAGTGAAACTCCAG 59 22896971 22896991 CACAGTTCGTAGAGAAGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11248 FBgn0037117 FBtr0078430,FBtr0078431 2 2 2 146 3L 21675714 21675788 CTACAAGAAGCTCGTTCAG 57 21675898 21675916 TTCATATCAGACTGGCAGG 58 NA Drosophila melanogaster 50 CG7611 FBgn0037094 FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362 1 8 8 84 3L 21519967 21519985 TAAACAGCATAGCCTTTCG 57 21520031 21520298 CTATCAAAGTTGTACCCTCTG 57 NA Drosophila melanogaster 50 CG7611 FBgn0037094 FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362 1 8 8 84 3L 21519967 21519985 TAAACAGCATAGCCTTTCG 57 21520031 21520298 CTATCAAAGTTGTACCCTCTG 57 NA Drosophila melanogaster 50 Eip78C FBgn0004865 FBtr0078308,FBtr0078307,FBtr0078306 1 3 3 92 3L 21257078 21257157 ACTCTACGATTCTGACTTTGTC 59 21257210 21257228 GAGAAGAGTCCGATTTCGG 59 NA Drosophila melanogaster 50 CG5618 FBgn0036975 FBtr0078179 1 1 2 130 3L 20347970 20347989 AGGTGATCCATTACTCTGTG 58 20348082 20348417 TTCGTAGGTGTATGTGCTG 59 NA Drosophila melanogaster 50 CG8533 FBgn0036907 FBtr0074877,FBtr0114601,FBtr0074878,FBtr0074876 1 4 4 169 3L 19794992 19795010 CATCTTCGACTACAAGCCT 59 19795205 19795274 ATGGTTCAGATGTGTCCAC 59 NA Drosophila melanogaster 50 CG6852 FBgn0036820 FBtr0075063 1 1 2 96 3L 18862842 18862860 AGAACTCGATGGAAATCCC 59 18862985 18863003 TTTGCCATCGATAAAGACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14353 FBgn0036771 FBtr0075144 1 1 1 60 3L 17901434 17901452 GGCCAAGTTTGTGATTCTG 59 17901474 17901494 TTCGTAGATGTCCATGATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5535 FBgn0036764 FBtr0075158,FBtr0075159 3 2 2 256 3L 17847364 17847452 GAATACGCAATTGGCTCTG 59 17847126 17847145 ATAATGACGAACAACACGAC 58 NA DesignRelaxed Drosophila melanogaster 50 Msi FBgn0043025 FBtr0110847,FBtr0110846 1 2 3 93 3L 17749107 17749128 CTGGAGTGAATTTATCTTCACC 58 17748907 17749053 ATCGTACATATTTGGCAGC 57 NA Drosophila melanogaster 50 CG7460 FBgn0036749 FBtr0075187 2 1 1 60 3L 17734164 17734182 ATACGACAAGGTCAAGGAC 58 17734206 17734224 AAAGGTTTCATAGTGCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr73D FBgn0036680 FBtr0113176 1 1 1 141 3L 16933672 16933744 GGATAAGAGGTCTGTACTCCT 59 16933551 16933569 TACAGAGGACTGGAGTACG 59 NA Drosophila melanogaster 50 CG13032 FBgn0036652 FBtr0075316 1 1 1 100 3L 16669018 16669036 CAAATACGCTGAATTCGGC 59 16669158 16669176 CTTCTCTGTCAGCATTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33688 FBgn0053688 FBtr0091668 2 1 1 96 3L 16192716 16192734 CTTAAAGGATCCACGACAG 57 16192794 16192873 GACAACGTCCTTATATGGG 57 NA Drosophila melanogaster 50 Pgm FBgn0003076 FBtr0075492 3 1 1 127 3L 16119538 16119556 CAGATCCTGTCGACAAGTC 59 16119363 16119447 ATCAATGTACAAGCGAACG 58 NA DesignRelaxed Drosophila melanogaster 50 CG6876 FBgn0036487 FBtr0075642 1 1 1 238 3L 15153332 15153350 CTGTCATGAGAGTGTCCAC 59 15153552 15153629 CATCCTCTTCGATGTCTCC 59 NA DesignRelaxed Drosophila melanogaster 50 Pdi FBgn0014002 FBtr0075650,FBtr0075648 3 2 2 72 3L 15131510 15131531 CAATGAGGATATTGTCATTGCC 59 15131459 15131478 GAAGGACGAGATCTTAATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9238 FBgn0036428 FBtr0075724,FBtr0075723 1 2 2 66 3L 14540227 14540245 AAGGATAGTGACAGCAACG 59 14536002 14536020 CATCATCAGCGAAGATCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17361 FBgn0036395 FBtr0075767 2 1 1 60 3L 13990384 13990402 GAATTGGTGAAGATGTGCC 59 13990426 13990444 CGTAGATGTCTAGCAGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10732 FBgn0036365 FBtr0075851 3 1 2 99 3L 13441475 13441551 GAACGAAGAGCAAATCCTC 58 13441614 13441632 GATTAGTTCGTGATCCGGT 59 NA Drosophila melanogaster 50 CG10191 FBgn0036354 FBtr0075863 2 1 1 79 3L 13381865 13381884 TTAGTATCCGCATTGATCCG 59 13381805 13381823 ATGTTTACTGTCGAGCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11529 FBgn0036264 FBtr0076005 3 1 1 60 3L 12191796 12191815 CAAGTACATCAGCAGTACCT 59 12191837 12191856 TATCACTGTACTGATGGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5642 FBgn0036258 FBtr0076022 2 1 1 162 3L 12136976 12136995 CAAACTGGCATCTTTCATCG 59 12136774 12136851 GTAGAAGTCCAACTCGGAG 59 NA Drosophila melanogaster 50 CG17152 FBgn0036250 FBtr0076026 3 1 1 60 3L 12119339 12119357 ATGAGAACGTTCCTCATGG 59 12119297 12119315 CAAAGTAGATGGTGGACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14128 FBgn0036218 FBtr0076036 2 1 1 60 3L 11873495 11873514 CATACAAAGAACCACTACCC 57 11873536 11873555 TTACAAGTTAGTCCTTCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7368 FBgn0036179 FBtr0110884 1 1 1 182 3L 11596183 11596201 CAATATGCAACTGTTGCGT 59 11596347 11596449 ATTCTGGAGTACTTGCTGC 59 NA Nonspecific Drosophila melanogaster 50 CG14141 FBgn0036146 FBtr0076164 2 1 1 60 3L 11194892 11194911 CATATCACCTGGTACAAGGA 58 11194934 11194952 CGTGTACGTGCATATAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mocs1 FBgn0036122 FBtr0076206,FBtr0076205,FBtr0076204 3 3 3 110 3L 11064200 11064218 TTTCTCTAACCGAACGCTG 59 11064720 11064739 CTAGACGAAGGATTTCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8065 FBgn0036075 FBtr0076296 3 1 1 69 3L 10209611 10209631 AACTTCCATCTATATCGGAGC 59 10210144 10210162 ATTTCATCAGATCGGAACC 57 NA DesignNoJunction Drosophila melanogaster 50 Or67a FBgn0036009 FBtr0076375 2 1 1 80 3L 9524084 9524163 GAGGTTAATAGATGCTAGCG 57 9524206 9524224 TTCTTGAATCGTTTGTCGG 58 NA Drosophila melanogaster 50 CG4022 FBgn0035986 FBtr0076486 2 1 1 155 3L 9402484 9402502 ATTGTCTTTGCCGTAATGG 58 9402276 9402365 GAGTATTACGGCGTTTCTG 58 NA Drosophila melanogaster 50 CG5288 FBgn0035950 FBtr0076553,FBtr0076555,FBtr0076554 2 3 3 81 3L 8977959 8977978 GCTTCAACTCAGAAATCTCG 58 8977752 8977915 CTTTGGAAGCTCGATTCTG 58 NA Drosophila melanogaster 50 pix FBgn0086706 FBtr0076558,FBtr0076557 2 2 2 82 3L 8966608 8966629 CTCGTATTTGGATGTTAAGCAG 59 8966488 8966568 CCACAATAATAAACTTGGTGGG 59 NA Drosophila melanogaster 50 CG6745 FBgn0035901 FBtr0076620 2 1 1 88 3L 8504065 8504083 GGATTACGTGACCTTCCTG 59 8504135 8504212 ATGGTCGTAAGTTCAGTCG 59 NA Drosophila melanogaster 50 Gug FBgn0010825 FBtr0076616,FBtr0076619,FBtr0076617,FBtr0076618 3 4 4 80 3L 8463572 8463862 TCAGTACTTTAGACAACGGC 59 8463903 8463923 CCGAGTATTGTCTTTGTTCAG 58 NA InUTR Drosophila melanogaster 50 CG13678 FBgn0035859 FBtr0076700 1 1 1 97 3L 8215942 8215960 ATCCATGGATTGTAAACCC 57 8216020 8216039 TTAATGCATCACAAGTAGGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG8038 FBgn0035831 FBtr0076763 3 1 1 63 3L 7971158 7971176 TGGAGTTCACCATATTCGG 59 7971113 7971131 ATCTTCTTAACGCTTCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780 1 8 8 125 3L 7811265 7811285 GATGACAAATACAAGGAGGAG 58 7810754 7811178 GTCGGCATATTGTGTTACC 58 NA Drosophila melanogaster 50 CG8607 FBgn0035760 FBtr0076837 1 1 1 60 3L 7313438 7313459 GCGAATCTGTATAAGAAACACC 59 7313543 7313561 GAATGTCGTGCATGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32389 FBgn0052389 FBtr0076921 2 1 1 60 3L 7155903 7155922 AGAAACAGTTCCATAAGCAG 57 7155862 7155883 CTACTATGCTGGGAATTATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14820 FBgn0035718 FBtr0076894 2 1 1 101 3L 6927067 6927178 CTGTGGATGTTGACTGGAG 59 6927242 6927261 TATGTAGGCGGTTAGTTGAC 59 NA Drosophila melanogaster 50 CG10226 FBgn0035695 FBtr0077012 3 1 1 97 3L 6231474 6231494 TCTCCTTTATCTACGGATGGA 59 6231114 6231415 TTTACCTTGGTAATGGGCC 59 NA Drosophila melanogaster 50 CG10625 FBgn0035612 FBtr0113145,FBtr0113144,FBtr0077140,FBtr0077139,FBtr0077137,FBtr0113146,FBtr0077138 1 7 7 60 3L 5538130 5538149 AGAACCGTCGTCTAATTCTC 59 5538089 5538107 GAATAGTACTGACGGTTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lkr FBgn0035610 FBtr0077149 2 1 1 80 3L 5508765 5508852 ATTTCGCGAGAACAATGAG 58 5508703 5508722 GATTGCAATTGATCATCGGA 58 NA Drosophila melanogaster 50 CG34047 FBgn0054047 FBtr0100102 3 1 1 62 3L 5099394 5099412 CTGTATATTGTTGCACCCG 58 5099350 5099368 AACATTGGTGCAAGATGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11347 FBgn0035542 FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141 3 6 6 227 3L 4419446 4419464 GTATTAGGTCCACCCAGGA 59 4419654 4419749 TGTTCTTGCTCTTCTGACTC 59 NA DesignRelaxed Drosophila melanogaster 50 Gr64c FBgn0045477 FBtr0073196 1 1 1 80 3L 4031427 4031503 ATAGCTTTCAATCCAAGGG 57 4031547 4031565 TTAGTACGCGAATGATGAC 57 NA Drosophila melanogaster 50 CG16758 FBgn0035348 FBtr0072963 3 1 4 144 3L 2503188 2503206 ATGGAACCAATGGACACAG 59 2500454 2501079 TAGGGATACGTGTCTTCGT 59 NA Drosophila melanogaster 50 CG7852 FBgn0035229 FBtr0072735,FBtr0072737,FBtr0072736 1 3 3 81 3L 1539065 1539083 AGCATCACGCTGATATGTC 59 1539125 1539209 GTCGAGGAAGACATCTATACAG 59 NA Drosophila melanogaster 50 Glut1 FBgn0025593 FBtr0112911,FBtr0072617,FBtr0072616,FBtr0112909 3 4 6 80 3L 982228 982246 CCTGCATCTCTATGGTCTG 59 982288 983865 TCGATCATTTCCTTGATCAGG 59 NA Drosophila melanogaster 50 trh FBgn0003749 FBtr0112839,FBtr0072567,FBtr0110875 2 3 3 80 3L 369358 369379 GTTAACAAGAGCTTGTACTCAC 59 369140 369317 CTTCTCGATCAGGTCTGAG 58 NA Drosophila melanogaster 50 E(bx) FBgn0000541 FBtr0072522,FBtr0072521 1 2 3 87 3L 234500 234582 TTAAAGAGCCAATGGATCTC 57 234432 234453 GTCATATCGCCTATAAACTCAG 58 NA Drosophila melanogaster 50 Mtch FBgn0027786 FBtr0072477,FBtr0072479 1 2 3 83 3L 185060 185138 ACATCTTTCAGTACGCTGG 59 185185 185203 AACCCACCAATTTAGGAGC 59 NA Drosophila melanogaster 50 CR30009 FBgn0050009 FBtr0088361 2 1 1 73 2R 6151291 6151309 ATTGAGTTACGATCTCGGT 58 6151236 6151254 TTGAACTTTAAGCAACGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13585 FBgn0035020 FBtr0072303,FBtr0072304 2 2 2 99 2R 20420152 20420423 ACGAGTGTTACGATGTCAC 59 20420486 20420504 ACGATCAGGAAGATCATGG 58 NA DesignRelaxed Drosophila melanogaster 50 Pde8 FBgn0034886 FBtr0072075 2 1 5 181 2R 19563344 19563362 CAGATGGACTTCATAGCCA 58 19563505 19564584 GCCGAACAATTCTCTTTAGTG 59 NA Drosophila melanogaster 50 Dcp-1 FBgn0010501 FBtr0072062 1 1 1 138 2R 19440362 19440380 CTCTTCTCCTACTCGACCA 59 19440542 19440560 TAACGAATGTAAGCAGGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG13541 FBgn0034841 FBtr0072001 2 1 1 60 2R 19172180 19172201 CAGAAGAACCCTTATTCAAACC 59 19172220 19172240 TGTATCTTCGTCATCATCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13539 FBgn0034833 FBtr0071998 2 1 1 60 2R 19072377 19072396 GATACGAAGAAGCGTTATGG 58 19072416 19072437 GGAAATCCAAGACTATCAAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30193 FBgn0050193 FBtr0071948,FBtr0113364,FBtr0071945,FBtr0071949,FBtr0071946,FBtr0071947,FBtr0071944 2 7 7 60 2R 18816760 18816778 CACAGAGACGATCTACGAG 58 18816802 18816820 GCTAACCTCTCGAATAACC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30190 FBgn0050190 FBtr0113362,FBtr0113363 2 2 3 121 2R 18817732 18817750 CAGGATGACATCAGCTCTG 59 18817835 18819048 ATGGATTTGTCCTCATTGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 mRpS29 FBgn0034727 FBtr0071842 2 1 1 60 2R 18306707 18306725 ACACTGGATCAACAAGACG 59 18306665 18306685 CTTGTTGCTCATGAACTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dve FBgn0020307 FBtr0071775 2 1 2 223 2R 18150945 18168186 AATCCCAAATCACTTCCAC 57 18168373 18168504 ATTAATGAGCCTCTGGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 synj FBgn0034691 FBtr0071757,FBtr0071756 1 2 2 102 2R 17970123 17970141 TACTGGACAACTCAAAGCA 58 17970274 17970292 ATATTGGAGGGCAGTAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG30289 FBgn0050289 FBtr0071697 3 1 1 101 2R 17408612 17408690 GTACTCAGATTATGTTAGGCC 57 17408531 17408550 TGACCATATTCTGTTTCACC 57 NA Drosophila melanogaster 50 CG9822 FBgn0034623 FBtr0071612 2 1 1 165 2R 17234803 17234821 AGAGCACAAACTCATCGAC 59 17234587 17234607 ATTGTAGATGTAGAGGAAGGG 58 NA DesignNoJunction Drosophila melanogaster 50 Treh FBgn0003748 FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536 3 6 6 81 2R 16972827 16972845 TTTAATGCCATGATGGAGG 57 16972889 16972968 GTGCACTGAAGTACTTATCG 58 NA Drosophila melanogaster 50 Obp56f FBgn0043533 FBtr0086328 3 1 1 69 2R 15601279 15601297 ATTCCATCAAGGCTTCAGG 59 15601329 15601348 TTGGTAATGGACTGATAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fak56D FBgn0020440 FBtr0086542,FBtr0086543,FBtr0114605,FBtr0086544 2 4 5 83 2R 15322745 15322827 GGTATTAATACCGCTGAGAG 57 15322681 15322699 CCAAATCGTGAACTCTAGG 57 NA Drosophila melanogaster 50 CG15072 FBgn0034376 FBtr0113095,FBtr0113094,FBtr0086604 1 3 3 80 2R 14588756 14588831 GAGCTGCAAAGCTATATGC 59 14588874 14588893 ATGTGCTACGGATAGATCCT 59 NA Drosophila melanogaster 50 CG30116 FBgn0028496 FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718 3 4 4 80 2R 14363164 14363625 GGATTATCGCCTTATGAACG 58 14363103 14363121 GATTGAAAGGCTTGTTCCA 58 NA Drosophila melanogaster 50 Gbp FBgn0013969 FBtr0086723 2 1 1 73 2R 14336993 14337011 GGAACCTATCTGGCTATCG 59 14335078 14335096 AATACCTTCAGTTCCTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 Dp1 FBgn0027835 FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682 1 6 6 83 2R 14304949 14304967 CATCTCCTCGATCATGGAG 59 14305013 14305092 CGAATAGTGACCTTATCGCT 59 NA Drosophila melanogaster 50 MED9 FBgn0034311 FBtr0086747 1 1 2 105 2R 14054995 14055014 GATTCTGCCGATAATCTACG 58 14055216 14055286 TTCAAAGATCTTGTGGTTGC 58 NA Drosophila melanogaster 50 CG10936 FBgn0034253 FBtr0086894,FBtr0086895 1 2 2 81 2R 13494101 13494119 ACCAGAGCTACTTGATCAC 58 13493968 13494058 GGAATAAACTTCGTTGAGCTG 59 NA Drosophila melanogaster 50 Rab4 FBgn0016701 FBtr0086830,FBtr0086831,FBtr0086829 1 3 3 82 2R 13461765 13461847 AGAGAACGAGCTTATCTTCC 58 13461892 13461910 TGGTCTTTGAGCACTTGAG 59 NA Drosophila melanogaster 50 CG10956 FBgn0034195 FBtr0110777 1 1 1 60 2R 13010825 13010844 ATATTTAAGCCCAGCAAGTC 57 13010784 13010804 CAATCCGAAAGTTGGTATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9002 FBgn0050462 FBtr0100120 2 1 2 205 2R 12884668 12884686 AGAAACTGGATGTGAAGGC 59 12884218 12884499 GATCGTGTTGTAGCATCCA 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG5065 FBgn0034145 FBtr0087108 3 1 1 82 2R 12509108 12509190 AAGATCAGAACCTACTGTGTC 59 12509234 12509252 CAGTTTGAGCTTCTCATCG 58 NA Drosophila melanogaster 50 CG4945 FBgn0034137 FBtr0087100,FBtr0087099,FBtr0087098 1 3 3 131 2R 12454486 12455297 GAATTGGAGAAGATCCAGCT 59 12455391 12455409 TTTGGGTACAGCTTTCAGG 59 NA Drosophila melanogaster 50 CG33550 FBgn0053550 FBtr0091520 2 1 1 86 2R 12354631 12354649 TTTGGTACACAGATTGGTC 57 12354699 12354773 TAAGGAATAGTGTACCGGG 57 NA Drosophila melanogaster 50 JhI-26 FBgn0028424 FBtr0087139 2 1 1 71 2R 12178209 12178228 TAATAGCTATAGGGAGCACG 58 12178438 12178456 TACTCCTTCAGAAGCTCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10731 FBgn0034081 FBtr0100497 1 1 1 101 2R 12034740 12034758 TTCCTGCTGATTCAGAAGC 59 12034593 12034675 TGGAAAGGTGGATAAGTGC 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG8397 FBgn0034066 FBtr0087261 3 1 1 154 2R 11904152 11904170 GTCGAGATCAATCCCAAGG 59 11903951 11904034 AAGAAGTCGGTGATCTTCC 58 NA Drosophila melanogaster 50 CG8291 FBgn0034049 FBtr0087298,FBtr0087299,FBtr0087300 2 3 3 89 2R 11812694 11812776 GGATACAGAACATCTTTGCTG 59 11812625 11812643 TAAGAAACGTTTCCTGCGT 59 NA Drosophila melanogaster 50 CG8102 FBgn0034007 FBtr0087393,FBtr0087394 3 2 2 60 2R 11184882 11184901 CCAAACTTTACTGTCTCAGC 58 11184841 11184859 GACATCTCTTCCTCCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12424 FBgn0033987 FBtr0087409,FBtr0087410,FBtr0087411 1 3 3 101 2R 10865415 10865739 TGGTGCTCATTAAGGTTCG 59 10865804 10865822 TGTAATGGCTGAAGGTCAG 59 NA Nonspecific Drosophila melanogaster 50 Ciao1 FBgn0033972 FBtr0087460 3 1 1 82 2R 10741542 10741560 ACGATCAGGACGTAAACTC 59 10741478 10741496 TTTAATGGTGCCATCATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arc1 FBgn0033926 FBtr0087560 2 1 1 74 2R 10247479 10247500 AGACATACAAGGATGTAGAAGG 59 10247426 10247444 CCATACCGTAGAACAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13349 FBgn0033886 FBtr0087611,FBtr0114495,FBtr0114494,FBtr0087610,FBtr0114493 2 5 5 80 2R 9847383 9847401 GACGATCTCATCGTCTTCC 59 9847321 9847339 CTTAAGCACATAGACACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13344 FBgn0033884 FBtr0087586 2 1 1 244 2R 9749705 9749723 CCTAATGGACGATGTTTGC 58 9749993 9750011 TTGACTCCTTGATCTTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6145 FBgn0033853 FBtr0087687,FBtr0087685,FBtr0087686 3 3 3 60 2R 9426355 9426491 GCTAGTGACCTTTAAAGATGG 58 9426315 9426334 GCAGACGATAAAGTCAATCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG13331 FBgn0033850 FBtr0087672,FBtr0087673 1 2 2 96 2R 9409561 9409579 CTTCATCCTCGACTACGAG 58 9409834 9409852 AATCTCGTAGGATTCCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33528 FBgn0053528 FBtr0091491,FBtr0091493 2 2 3 87 2R 9406102 9406120 GGAATTGCCATACTCTGCT 59 9405635 9406054 AGATCAAAGACTTCTTCTCGTC 59 NA Drosophila melanogaster 50 CG17041 FBgn0033822 FBtr0087749,FBtr0087751,FBtr0113080,FBtr0087750 2 4 4 222 2R 9151041 9151059 GATAATGTGGCAAGACCCT 59 9151379 9151397 GTTCTCAATGGTGTTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4646 FBgn0033810 FBtr0087764 1 1 1 60 2R 9107604 9107623 TTCTTCTTGAAGCTGAAGTG 58 9107563 9107581 TGATATCGTGCCACTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AQP FBgn0033807 FBtr0087766 1 1 1 293 2R 9100790 9100808 CTTCAAGGAGATGGCTCTG 59 9100455 9100533 TTAAAGGCGTAAACTGCCA 59 NA DesignRelaxed Drosophila melanogaster 50 Drl-2 FBgn0033791 FBtr0087795,FBtr0087794 1 2 2 83 2R 8945719 8945833 CCCAGATGAATTCTTTACGG 58 8945655 8945673 TACGATAGCAACTGTGAGG 58 NA Drosophila melanogaster 50 CG33798 FBgn0053798 FBtr0091802 1 1 1 80 2R 8881824 8881844 CCGTTACTAAGTTCATCTTCG 58 8881883 8881975 TAATTATGTCATGGTCGTAGGG 59 NA Drosophila melanogaster 50 CG8831 FBgn0033737 FBtr0087952 2 1 1 60 2R 8317044 8317065 TCTTAACTTCTGCAGAGAACTC 59 8316949 8316968 CGTTTGAATCACTTGTTGCT 59 NA DesignNoJunction Drosophila melanogaster 50 garz FBgn0033714 FBtr0087898,FBtr0087897 2 2 2 81 2R 8216834 8216852 AATTTGCGTGGTCTAAACG 59 8216896 8216979 TCTCTTCGTTCTTGATTGCA 59 NA Drosophila melanogaster 50 CG18343 FBgn0033683 FBtr0087982 1 1 1 71 2R 8026466 8026484 CCATGTACTCTGTTCTGGG 59 8026519 8026537 AAAGTATTGCGTAGCACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rep1 FBgn0024732 FBtr0087978 3 1 1 260 2R 7935685 7935986 CATTGGATCGATCCCACTC 59 7936210 7936228 CATAAACTCCTTTCCCGTG 58 NA DesignRelaxed Drosophila melanogaster 50 MCPH1 FBgn0033664 FBtr0088055,FBtr0088056 2 2 2 82 2R 7785976 7786066 CAAACTACTCAACAGGATAAGC 59 7785915 7785933 TACCATTGGTTCCCATCAG 58 NA Drosophila melanogaster 50 nompA FBgn0016047 FBtr0089382,FBtr0089381,FBtr0089379,FBtr0089380 2 4 4 81 2R 7203664 7203682 GCAGAAGGATGACATTAGC 58 7203432 7203619 GTTGGCTCGTTGATTATCG 58 NA Drosophila melanogaster 50 CG13210 FBgn0033612 FBtr0088174 1 1 1 60 2R 7182955 7182974 CTAACGAGTCGTATAACCCT 58 7182914 7182932 TTAAGCAGAAACCCAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS15Ab FBgn0033555 FBtr0088226 2 1 1 119 2R 6709609 6709627 CAGTTTGGTTACGTTGTGC 59 6709710 6709728 GATGTGAACTTGGTGTCTC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 stan FBgn0024836 FBtr0088214 3 1 1 117 2R 6604799 6604817 CACCCTAAATGGAGGATCC 59 6604898 6607314 AATATTCCGCTCGGTATCC 58 NA Drosophila melanogaster 50 CG12920 FBgn0033481 FBtr0088404 1 1 1 120 2R 5957468 5957487 GAAAGTGGTGATCGTATCCT 59 5957570 5957649 AGAGAAAGACGAAGGAGGA 59 NA Drosophila melanogaster 50 TER94 FBgn0024923 FBtr0112905,FBtr0088391,FBtr0112906,FBtr0088392 1 4 4 102 2R 5880410 5880494 GACAGAACTTCAGATTCCC 57 5880560 5880578 CTGTAAAGATCATCGTCGC 58 NA Drosophila melanogaster 50 cbx FBgn0011241 FBtr0088453,FBtr0088452 3 2 2 148 2R 5752729 5752809 ATGCTAACTCCTTGCAGTG 59 5752545 5752563 ATGAATCACATCCTGCTGG 59 NA Nonspecific Drosophila melanogaster 50 CG12929 FBgn0033429 FBtr0088541 3 1 2 149 2R 5473877 5473895 GAGGGCCAGTATTACAGTG 59 5473688 5473706 ATCATCAGGATACTGCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG1888 FBgn0033421 FBtr0088547 1 1 1 60 2R 5433057 5433075 AACAGCTCAGCTATTACCG 59 5433015 5433033 ATGTTGGTGAATCTCACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2127 FBgn0033286 FBtr0088765 1 1 2 84 2R 4257390 4257408 TCAGAAATGTCGTTCCCTC 59 4257324 4257343 CCAATCGACCTTGAATAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rs1 FBgn0021995 FBtr0088788 3 1 1 114 2R 4053428 4053632 TCCATTGAGGTTCTCATTCTG 59 4053708 4053726 AGAACAACATGGTCTGACG 59 NA Drosophila melanogaster 50 CG14762 FBgn0033250 FBtr0088867 2 1 1 113 2R 3899227 3899245 TGCCAATGTGTTTAGTCAC 58 3899071 3899151 AGATATTGCAGGTTCTCCTC 58 NA Drosophila melanogaster 50 CG30497 FBgn0050497 FBtr0088932 2 1 3 93 2R 3629422 3665994 TATCCCATAATGCAGTGCG 59 3629347 3629365 CATCGTCGATCTGGTAGAC 59 NA Drosophila melanogaster 50 didum FBgn0015933 FBtr0089745,FBtr0089744,FBtr0089743 3 3 3 121 2R 3389124 3389142 CTACTGGAGAAGTCACGTG 59 3389226 3389310 AATTTGTCCTGGTGATCCAG 59 NA Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012 2 6 7 107 2R 3293620 3293715 CAAATATGACTTCAAGCCAGC 59 3287508 3293552 CCGGAACTTTCAGAATTTGG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111075 1 1 60 80 2R 3250881 3250901 GGATCACATAGACATAACCGA 59 3249357 3250839 ACCAGGTACTTTCCATCAG 58 NA Drosophila melanogaster 50 esn FBgn0028642 FBtr0089039,FBtr0089038 2 2 2 160 2R 3012689 3012927 GCGATGAGATCATCTTCTC 57 3013051 3013069 GAACATTGTGTCGAAGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 Cyp6u1 FBgn0033121 FBtr0086185 2 1 1 122 2R 2860228 2860304 AAGTCCTCAATGAAACGCT 59 2860124 2860142 GTATCAGCACATTGTTGCC 59 NA Drosophila melanogaster 50 CheB42b FBgn0066293 FBtr0086192 1 1 1 100 2R 2831080 2831099 CGACAAGAACCAGTATTGGT 59 2830839 2831017 GTACCAGAACGGTATCAGG 59 NA Drosophila melanogaster 50 CG33919 FBgn0053919 FBtr0091923 2 1 1 130 2R 2511757 2511831 ACCCAATTATCCGAATGCA 59 2511645 2511663 CATTATCACGCCATACGGT 59 NA Drosophila melanogaster 50 dream FBgn0033051 FBtr0086028 1 1 1 60 2R 1908911 1908988 AAATGCAATCCAAAGACCG 59 1908869 1908889 ACGTACTTAGAGGTAAGAGTG 58 NA DesignRelaxed Drosophila melanogaster 50 Ogt FBgn0040295 FBtr0086085,FBtr0086084,FBtr0086086 3 3 3 81 2R 1208107 1213316 CGAATATTTGATAGAGCTGTGG 59 1213356 1213376 CCAAATTGCCATGAACTACAG 59 NA Drosophila melanogaster 50 CG33492 FBgn0040849 FBtr0089605 1 1 1 124 2R 908331 908349 AATTCCTAGCATGGACGAG 59 908435 908679 CAAAGTGACTTACCTCATCAG 58 NA Drosophila melanogaster 50 CR33315 FBgn0053315 FBtr0081172 1 1 1 74 2L 19075210 19075228 GAGCAGCAATCAATATCGA 57 19075154 19075172 CAGATCCAGACTGGATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6675 FBgn0032973 FBtr0085936 1 1 1 60 2L 22109789 22109807 ATAGAGACCTTTGGAGCTG 58 22109831 22109849 CTCCAAACTGACGATTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His3:CG33815 FBgn0053815 FBtr0091819 1 1 1 60 2L 21454758 21454776 TCGAAGATACCAACTTGTG 57 21454800 21454818 ATGTCTTTGGGCATTATGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Acon FBgn0010100 FBtr0081473,FBtr0112855 2 2 2 118 2L 21172390 21172469 TACGATAAGATCCAGCCCA 59 21172550 21172569 TTAAGCTTGATCCTCTCGAC 59 NA Drosophila melanogaster 50 Mtp FBgn0032904 FBtr0081439 1 1 1 263 2L 20919614 20919699 GAAATCCAGCAGAACACTG 58 20919311 20919329 TTTGTGGGAGAGTGTAGAG 58 NA DesignRelaxed Drosophila melanogaster 50 Fs(2)Ket FBgn0000986 FBtr0081392 1 1 1 80 2L 20737376 20737394 TTCGACTGATGTACGACTC 58 20737435 20737524 CGGGAATTATATCGCAAATACG 59 NA Drosophila melanogaster 50 Taf13 FBgn0032847 FBtr0081340 1 1 1 82 2L 20093243 20093332 AGATCAAGTATGTGGGCAC 59 20093179 20093197 GGTTTGGCTTATACCTGGA 58 NA InUTR Drosophila melanogaster 50 vls FBgn0003978 FBtr0081347 3 1 1 96 2L 20064569 20064640 AGTTATTAATCAATGGGCCC 57 20064492 20064510 GTGTAGATGAACTCATGGC 57 NA Drosophila melanogaster 50 CG10263 FBgn0032812 FBtr0081264,FBtr0081263 2 2 3 159 2L 19581472 19581490 ATCAATCACAGACATGTGG 57 19581331 19581349 TTTAGGAGCCATAGCTACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ref(2)P FBgn0003231 FBtr0081253,FBtr0100289 3 2 2 115 2L 19544997 19545015 ATACGGTGAGTACATCGAC 58 19545094 19545167 GATGCTTTCATCAGTGTGG 58 NA Drosophila melanogaster 50 CG10623 FBgn0032727 FBtr0081190 1 1 1 60 2L 18956842 18956862 GGAGCGGATATTATTCTAACC 57 18956802 18956820 GGTACTTCACGAATCCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CadN2 FBgn0032655 FBtr0110886 3 1 2 100 2L 17810933 17815586 GATCACAATGAGTCGACGA 59 17810851 17810869 CTTGCCACGTAAATGACAC 59 NA Drosophila melanogaster 50 CadN2 FBgn0032655 FBtr0110886 1 1 2 95 2L 17810926 17815581 CAATGAGTCGACGAATATTCG 59 17810851 17810869 CTTGCCACGTAAATGACAC 59 NA Drosophila melanogaster 50 CG33928 FBgn0053928 FBtr0091932 2 1 1 84 2L 17436341 17436362 GTTCGGCTTTATAAGATACCAG 58 17436222 17436241 GGTTAAAGGGCATTAGACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG6860 FBgn0032633 FBtr0080969,FBtr0080968 2 2 2 83 2L 17372762 17372782 GTTATACTGTGTCATTTGGCC 59 17372634 17372717 CAACTTATTGACACCGGGA 59 NA Drosophila melanogaster 50 CG31819 FBgn0028893 FBtr0080821 1 1 1 97 2L 16213018 16213134 GCCTATCAGTCCATGTACTC 59 16213191 16213212 TGAATATCTCTAATCGGTCGAC 59 NA Drosophila melanogaster 50 BicC FBgn0000182 FBtr0080804,FBtr0080803 2 2 3 154 2L 16044464 16044798 TTCCATGACATCATGAACAC 58 16044978 16044996 GAGTCAAGACTGCTAAGGA 58 NA Drosophila melanogaster 50 CycE FBgn0010382 FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775 2 5 5 97 2L 15729492 15729577 TACATTTAGTCGGGAGATGG 58 15729414 15729432 AGATCACTCGGAAGAATGG 58 NA Drosophila melanogaster 50 vas FBgn0003970 FBtr0080701 1 1 1 102 2L 15073416 15073495 CGATCCAAGCTAATAGAAATCC 58 15073558 15073576 TTTCTGACAGGAAGGAAGC 59 NA Drosophila melanogaster 50 CG4480 FBgn0032553 FBtr0080684 3 1 1 60 2L 14871564 14871584 GACTATCTATCACTACAAGCC 57 14871458 14871476 ATAAACCTTTATCCAGCCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG7516 FBgn0028529 FBtr0080639 3 1 1 101 2L 14353767 14353786 TGACTATCAGTTCGTCACAG 59 14353625 14353703 TCCATAAAGTATCCGTGCA 58 NA Drosophila melanogaster 50 smi35A FBgn0016930 FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289 2 5 5 90 2L 14195795 14195814 CGGATGGATCTCATAATGTC 57 14189225 14195742 AGGTTCAAGCTCATTAGCT 58 NA Drosophila melanogaster 50 CG5439 FBgn0032476 FBtr0080435 2 1 1 60 2L 13177382 13177402 AATCTCACAGAAGTTCAGTGG 59 13177423 13177442 TTCCTGAACAGATTCATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ACXA FBgn0040510 FBtr0080415 3 1 1 80 2L 12924118 12924194 TGAACTACAAGCTCAACCTG 59 12924234 12924255 TAAGCAGGATTATGATGGACTG 59 NA Drosophila melanogaster 50 CG6153 FBgn0032445 FBtr0080394 3 1 1 62 2L 12693623 12693641 TTTGGCGAAGACATAACAC 58 12693729 12693748 ATGAGCTTCTGTGAACTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 bun FBgn0010460 FBtr0111004,FBtr0080377 1 2 6 178 2L 12477157 12536283 GACTGAAAGTGCATCTGGA 59 12458106 12458124 TGAGAATGCTGTTCTCGAG 59 NA Drosophila melanogaster 50 CG31862 FBgn0051862 FBtr0080350 3 1 1 60 2L 12339353 12339372 GATAAGGACACTGACAAGGA 58 12339395 12339413 ACAAATCGATGATATGGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17218 FBgn0032421 FBtr0080343,FBtr0080342 3 2 2 62 2L 12173530 12173548 ATAGGCTAGGACTGATGGG 59 12173574 12173592 GAAGATGAGCCACAATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16965 FBgn0032387 FBtr0080284 3 1 1 233 2L 11983090 11983164 TAAGGGAGCTAGATTTCCCT 59 11983360 11983378 TTGGTGGAATCATCACAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG16833 FBgn0026147 FBtr0080152,FBtr0080150 1 2 3 82 2L 10990775 10991068 TAACATACTCTCGGAACGC 59 10991114 10991132 CACGGTTGTAGAAGTACGA 59 NA Drosophila melanogaster 50 UbcD2 FBgn0015320 FBtr0080116,FBtr0080115 3 2 2 128 2L 10766393 10766411 TGCTCACAGACTGTAATCC 58 10766108 10766126 AACTTACGCATCATGTTGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7456 FBgn0032258 FBtr0080038 1 1 1 80 2L 10487109 10487129 ATCATGAAGAACTCCGATCTG 59 10486989 10487070 CTCCATGAAATATCTTTCCAGC 59 NA Drosophila melanogaster 50 rho-5 FBgn0041723 FBtr0089855 2 1 1 90 2L 10369522 10369602 TTGTGCTCTCAGATATCGTG 59 10369451 10369469 TGAGCAATCGGTATAGCTG 59 NA Drosophila melanogaster 50 Sps2 FBgn0032224 FBtr0079998,FBtr0079997 2 2 2 139 2L 10343347 10343422 ATAATACTACCGTCAAACGC 57 10343524 10343542 TCACTACATTCAGACAGCA 58 NA InUTR Drosophila melanogaster 50 Ror FBgn0010407 FBtr0079978 2 1 1 84 2L 10254250 10254268 TGGAAAGTTTACGACCGAG 59 10254316 10254393 GTAGTATGGCTGCATTCCA 59 NA Drosophila melanogaster 50 CG4598 FBgn0032160 FBtr0079877 1 1 1 80 2L 9919099 9919178 TTTGACTTCGTCTAGCTCC 59 9919222 9919240 CGAATCCTGTCCTTATCCG 59 NA Drosophila melanogaster 50 Fbp2 FBgn0000640 FBtr0079808 2 1 1 60 2L 9427354 9427372 CTACATGGACAAGACACAG 57 9427393 9427414 ATAGACAGAGGACATGTTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12439 FBgn0032094 FBtr0079767 2 1 1 60 2L 9077469 9077488 CTTCACCGAAATAATCCTGC 58 9077509 9077529 AAATCGATAGGTCATCCTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13101 FBgn0032084 FBtr0079783,FBtr0079784 2 2 2 83 2L 8978779 8978870 CCAGAATATGCGGATAAACTG 58 8978716 8978736 CAGAGATATGATGTGCATACC 58 NA Drosophila melanogaster 50 CG18088 FBgn0032082 FBtr0079759 1 1 1 130 2L 8968366 8968781 GATACAATAAGGTTGCCGAC 58 8968874 8968892 TATCATTGGCATCTCGTCC 59 NA Drosophila melanogaster 50 raw FBgn0003209 FBtr0079746,FBtr0079745 1 2 2 81 2L 8712592 8712681 ACAATCCTCAAGTATCCGA 57 8712529 8712547 AAGAATAATACACGGGCCT 58 NA Drosophila melanogaster 50 CG8455 FBgn0031997 FBtr0079588,FBtr0079587 1 2 2 89 2L 8200026 8200113 TTATGCTGGCCACTATAACC 59 8200162 8200183 CACTCAGATAGCTATTGAAGAC 58 NA DesignRelaxed Drosophila melanogaster 50 Trf FBgn0010287 FBtr0079542 3 1 1 61 2L 8073573 8073591 ATCTATCGCATGGTCAAGC 59 8073615 8073634 AATACAACCTTTCCGTTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7196 FBgn0031944 FBtr0079482,FBtr0079483 1 2 2 124 2L 7765144 7765222 GAAATGCCAAGGATATTCGC 59 7765309 7765327 GATATCTTGTTCCGGCTCC 59 NA Nonspecific Drosophila melanogaster 50 CG13786 FBgn0031900 FBtr0079409 2 1 1 205 2L 7251668 7251686 CACTTCAGAAAGTTGCGAC 59 7251357 7251447 GTGGTATTGGACTTGATGG 57 NA DesignRelaxed Drosophila melanogaster 50 CG13766 FBgn0031834 FBtr0079330 3 1 1 74 2L 6565805 6565823 GAATTGGCCTTCTATCTGC 58 6565749 6565768 ATTGTTCATGTTCTCATCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31638 FBgn0051638 FBtr0113411 1 1 2 253 2L 6492779 6492797 AAGCTAAAGAAGTTGCTGG 57 6495094 6496065 CTACGGAGTCTATTCTGGAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG13998 FBgn0040949 FBtr0079241 3 1 1 61 2L 5956684 5956702 CGATGTTCCAGTTTCTGGA 59 5956641 5956659 CAGTAGGTGAGACCAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14024 FBgn0031697 FBtr0079082 2 1 1 139 2L 5313078 5313276 TATATTAGCTGGCTACGATGTG 59 5312960 5312978 GCACAAAGAGAAAGGACAG 58 NA Drosophila melanogaster 50 CG31919 FBgn0031674 FBtr0079007,FBtr0079006,FBtr0100270,FBtr0079008 3 4 4 116 2L 5047102 5047120 AGATGGATCCACATAGTGC 58 5047198 5047284 CGTTATAGATAGCTGCATTCC 58 NA Nonspecific Drosophila melanogaster 50 Cg25C FBgn0000299 FBtr0079002,FBtr0079001,FBtr0079003 2 3 3 106 2L 5034886 5034904 GAGACATTGGTCCAAGAGG 59 5034973 5035074 TCCAATAAGACCTTGACGTC 59 NA Drosophila melanogaster 50 CG15440 FBgn0031607 FBtr0077454 1 1 1 60 2L 4454130 4454148 TTCGTCAACTTCATATCCG 57 4454088 4454106 GCTTACCGTTTAGCTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdsw FBgn0021967 FBtr0077520,FBtr0077521 3 2 2 82 2L 3467046 3467136 GAACTGGTTCATCAAGTATGG 58 3467180 3467198 AGATCAGACGATGCTTCTG 59 NA Nonspecific Drosophila melanogaster 50 CG34406 FBgn0085435 FBtr0112671 1 1 1 110 2L 3172132 3172150 ATTGGACAAGGATGTCCAG 59 3171988 3172058 TGTGGAAAGGACTTATGCC 59 NA Drosophila melanogaster 50 Rbp9 FBgn0010263 FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635 3 7 7 80 2L 2963120 2963232 GCAATCTGTTAAGGTGATTCG 59 2963273 2963292 TCTTCGTAATTCGTCATGGT 59 NA Drosophila melanogaster 50 CG3119 FBgn0031466 FBtr0077691 3 1 2 122 2L 2837281 2837358 CAGATGACGATACGTACGT 58 2835536 2837195 CGCCAGACATATAACTCAC 57 NA DesignRelaxed Drosophila melanogaster 50 CG15394 FBgn0031439 FBtr0113016 2 1 1 74 2L 2592182 2592200 GATTTCTGTTCATGTGGGC 59 2592297 2592315 TTACGTACGAGGTCTTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15357 FBgn0040719 FBtr0077871 2 1 1 76 2L 1945393 1945411 ATATGATCCATGTGGCCAG 59 1945335 1945353 GTAGAACAAAGTGGATCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14351 FBgn0031349 FBtr0077875 1 1 1 142 2L 1600692 1600710 TACTCCCACTTATCCTGGG 59 1600816 1600970 AAAGTCCACCTGATCACAC 59 NA Drosophila melanogaster 50 Oseg3 FBgn0031262 FBtr0078078,FBtr0078077 3 2 2 87 2L 554391 554409 AATTCTGGAGATCCAGCAG 59 554261 554340 CAGTTCGGGTTTAATCAGC 58 NA Drosophila melanogaster 50 spen FBgn0016977 FBtr0078122 1 1 3 80 2L 199974 200131 CATAACACCGAATGATTCTACG 59 200171 200190 CCTCGCATTAAATGATGCTG 59 NA Drosophila melanogaster 50 Ser6 FBgn0011834 FBtr0077272 1 1 1 60 X 20834308 20834328 ACCAGAACCTACATCTTAACC 59 20834268 20834286 TCACATGATTCACGTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NPC1b FBgn0031140 FBtr0077239 1 1 1 151 X 20807598 20807747 GAGGATTGTCTTCGAGTCC 59 20807862 20807880 AAGAAGGTGAGCACTAGTC 58 NA Drosophila melanogaster 50 CG32506 FBgn0052506 FBtr0077309 2 1 1 80 X 20332614 20332686 CCAGCATGAAGTATCTGTG 57 20332730 20332748 CATTGCTCACCAGATACTC 57 NA Drosophila melanogaster 50 CG14234 FBgn0031065 FBtr0074790 3 1 1 106 X 19631524 19631543 TGAAGTACGTGACCATTCTC 59 19631611 19631743 GCCGATTATCCAATTGATGG 59 NA Drosophila melanogaster 50 CG34422 FBgn0085451 FBtr0112722 1 1 2 101 X 18749365 18749383 GTACAACTTCCTCGTCGAG 59 18749512 18749530 ATGGTATTGTAGGCCTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Aats-his FBgn0027087 FBtr0074593,FBtr0074594 1 2 2 238 X 18413274 18413353 TAAGTTGGATAAGTCGCCC 59 18413555 18413573 TAACTCGCTTATCCAGACC 58 NA DesignRelaxed Drosophila melanogaster 50 CG13008 FBgn0030780 FBtr0074323 1 1 2 91 X 16606047 16607822 TAAATTCAAGGCGTCAGCA 59 16607877 16607895 AGGATTCCCTAGAGTGGTG 59 NA Drosophila melanogaster 50 eIF-2alpha FBgn0004925 FBtr0074300 2 1 1 106 X 16339898 16340218 TCTATGTAATGACCACATCCAC 59 16339813 16339831 GAACTCTCCATCGTACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7860 FBgn0030653 FBtr0074045 3 1 1 216 X 15463321 15463339 TATCGGACTCCAGGATAGC 59 15463518 15463537 ATTAAACTGGCCTCTAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9518 FBgn0030590 FBtr0073983 1 1 1 60 X 14759142 14759161 GTGGAATTTGTGAAACATGG 57 14759101 14759119 AGATGATAACCTCCCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10353 FBgn0030349 FBtr0114451,FBtr0114452 2 2 2 125 X 11773010 11773092 CATCTACCAGAACATTATCACC 58 11772906 11772924 TACTCGATAATGTGCTCCC 58 NA Drosophila melanogaster 50 CG15220 FBgn0030322 FBtr0073535 1 1 1 60 X 11509440 11509459 GAACATCGACTTCGATAAGG 58 11509399 11509420 CTTGACATTGTTAATCAGGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11696 FBgn0030314 FBtr0073512 2 1 1 89 X 11469163 11469181 ACCATGCATCTTAAAGGAC 57 11469293 11469311 ACTTAGCTCAAACTTGGTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG15250 FBgn0030165 FBtr0071428 1 1 1 79 X 9861075 9861095 GTCACCAATATCTCAAAGTCG 58 9860856 9860874 TTAAAGAAGAGCACGAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32733 FBgn0052733 FBtr0071001 1 1 1 198 X 6846587 6846605 CTTCTGTCCAGGAATCGTC 59 6846767 6846785 GTAACGACTGCACATTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 XRCC1 FBgn0026751 FBtr0070763 1 1 1 120 X 5225639 5225719 TGTACCCATCTGATATGCG 58 5225803 5225821 ATGGCAGGTACTTCTTCAG 58 NA Drosophila melanogaster 50 CG4068 FBgn0029738 FBtr0112950 1 1 5 127 X 4824087 4825626 CATTTAAGCACAAATGCAGC 58 4823979 4824000 GTTCACTGTTATTGTGCTAGTG 59 NA InUTR Drosophila melanogaster 50 CG12681 FBgn0029730 FBtr0070717 2 1 1 60 X 4770020 4770038 AAGCACAACAATAGTCCGA 59 4770062 4770080 TACGCAATCGTTGATTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7024 FBgn0029722 FBtr0070712 3 1 1 131 X 4599598 4599617 TGATGAAGTTCAGTTGTGTC 58 4599711 4600047 ACTTGAACGTGTTCTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL30 FBgn0029718 FBtr0070682 1 1 1 110 X 4542116 4542214 CTACTATCCCAGGACTCCC 59 4542288 4542306 ATTCGATTCTCCCAGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3546 FBgn0029716 FBtr0070679 3 1 1 61 X 4452877 4452895 CGACTATGACGAAGAGGAC 59 4452920 4452938 CTCTGTAGTAGCCATTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3626 FBgn0029706 FBtr0070652 1 1 1 82 X 4263412 4263498 ACCTATAAGGAATTGGATGTGG 59 4263541 4263559 AGGACATAGCCCAATTCAC 59 NA Drosophila melanogaster 50 Ilp7 FBgn0044046 FBtr0070577 3 1 1 105 X 3562424 3562442 ATCAAGAAGACAACCACGG 59 3562632 3562651 ATATCGATGGAGTGTTTCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG32813 FBgn0052813 FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219 3 4 6 225 X 1283913 1283931 CAACCATTCGTTCATGGAC 59 1284338 1284356 CTTGATAAGGATCACGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG32813 FBgn0052813 FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070219 1 4 6 222 X 1283913 1283931 CAACCATTCGTTCATGGAC 59 1284335 1284353 GATAAGGATCACGTCCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG41328 FBgn0085618 FBtr0114062 1 1 1 81 U 1279473 1280594 TAACAAGAACACGCAATTGC 59 1279411 1279432 GAGTAAGAAACCTTACATTGCC 59 NA Drosophila melanogaster 50 CG40339 FBgn0058339 FBtr0113867 3 1 2 108 U 1062312 1062330 AACAGGTGATATTGCAAGC 58 1062401 1062865 TCGTTATCTCCACATAACGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS3A FBgn0017545 FBtr0089177,FBtr0089175,FBtr0089176 2 3 3 61 4 87508 87526 TTCAAGACCGTAATGTGCT 59 87364 87483 CCTGTACTTGTCCGTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aph-4 FBgn0016123 FBtr0085734,FBtr0085733 3 2 2 215 3R 26877631 26877709 ATCTCGTATGCCAATGGTC 59 26877888 26877906 AATCAAACTGGAACCAGGT 59 NA DesignNoJunction Drosophila melanogaster 50 wts FBgn0011739 FBtr0085720 1 1 1 81 3R 26617852 26617938 CATACCAGGTGGTGATCTG 59 26617789 26617807 CTCGGCGATGTAGAATCTG 59 NA Drosophila melanogaster 50 PH4alphaPV FBgn0051015 FBtr0085670 2 1 1 80 3R 26473291 26473383 CCTGTTAAAGCTTAACCAGC 59 26473230 26473248 AGTTTAATATCGTGCGGGT 59 NA Drosophila melanogaster 50 CecB FBgn0000278 FBtr0085640 3 1 1 230 3R 26039424 26039445 GAACTTCAACAAGATCTTCGTC 59 26039157 26039176 ATAAGAGAAATGAGCGGGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Nlp FBgn0016685 FBtr0085552 2 1 1 237 3R 25830773 25831023 CTACGGAGTCACTTTGACC 59 25835480 25835498 CTTCGACTCGTAGAACTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2321 FBgn0039663 FBtr0085436 3 1 1 158 3R 25313035 25313055 TTAAGATACTCTTCGAAGCGG 59 25312844 25312862 ATCAAATTGCAAGCTCACC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113301,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 1 8 8 80 3R 24639526 24639610 TTGACAATGAGTCTGATGC 57 24639653 24639672 AATATCCGTAGCAGTAAGGA 57 NA Drosophila melanogaster 50 CG34295 FBgn0085324 FBtr0112491 1 1 1 60 3R 24616057 24616075 ACGTTTATGGATTTCGCTG 58 24616095 24616117 CCTAGACTTATGTAGAGATCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4849 FBgn0039566 FBtr0085257 1 1 1 88 3R 23790243 23790322 CATAAACAAGATTGATCGCCTC 59 23790371 23790389 TGACTTCCTCCACAATGTG 59 NA Drosophila melanogaster 50 l(3)mbt FBgn0002441 FBtr0085175 1 1 2 133 3R 23098733 23098753 CGAATCATACGGTTAAAGCAG 59 23097907 23098569 GTTTGTTATTACCCGCACG 59 NA InUTR Drosophila melanogaster 50 spz FBgn0003495 FBtr0085143,FBtr0085139 2 2 12 93 3R 22892852 22892870 AATGATGAGGGAGTTGTCC 58 22892194 22892339 AGACAAAGGTATCCGATGG 58 NA Drosophila melanogaster 50 Tl FBgn0003717 FBtr0085060,FBtr0085059 2 2 2 103 3R 22664652 22664670 GGATAATTTGCTAACCGGC 58 22664854 22664872 CTCTGGAATCGATGGTACG 59 NA DesignNoJunction Drosophila melanogaster 50 exo84 FBgn0086476 FBtr0084978,FBtr0084977 1 2 2 192 3R 21876053 21876073 CGACACATGGATTAATCTCAC 58 21875826 21875899 TACAAAGTTGGGATCCACG 59 NA Drosophila melanogaster 50 CG14540 FBgn0039398 FBtr0084948 2 1 1 147 3R 21786302 21786388 GAACAAGTCATTAGCAAGGT 58 21786498 21786516 AAAGACTCAGCATTTCCTG 57 NA Drosophila melanogaster 50 CG17370 FBgn0039381 FBtr0084909,FBtr0084910,FBtr0084911 2 3 3 88 3R 21711544 21711628 GGAACCAACGGATAAATTCG 59 21711678 21711697 AGAACATGATGAGCAGTGAG 59 NA Drosophila melanogaster 50 msi FBgn0011666 FBtr0084881,FBtr0084882 2 2 2 133 3R 21425812 21425830 CCCTCATATCACAGAACCC 59 21425927 21426004 GTAGGGTGCATATCTGACG 59 NA Drosophila melanogaster 50 CG13625 FBgn0039210 FBtr0084671 3 1 1 65 3R 20410610 20410628 GACGAAGATCTACTGCTGG 59 20410563 20410581 ATCCTCTTCGATGTACTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13624 FBgn0039209 FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795 3 6 6 127 3R 20386540 20386625 TTAAGGTGTACAAGCACAG 57 20386431 20386449 AGTCATGTCATTGATGGTG 57 NA Drosophila melanogaster 50 Golgin84 FBgn0039188 FBtr0084629 3 1 1 61 3R 20182199 20182272 ACAGATGATGTCAAAGCAC 58 20182156 20182174 ACACGATTATCGAATGGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5746 FBgn0039186 FBtr0084631,FBtr0084630 2 2 2 116 3R 20172702 20172815 ATCAGAACTACAACTCGACG 59 20172605 20172623 GTCCGGTAGCATTGTAGTC 59 NA Drosophila melanogaster 50 spas FBgn0039141 FBtr0084533,FBtr0084534 2 2 2 240 3R 19864977 19865327 GAACGAAGGTCACAAAGAG 58 19865676 19865694 CTCTTCTTTCTGCTTCTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG12268 FBgn0039131 FBtr0084513,FBtr0084514 2 2 2 78 3R 19769934 19769952 CTTCTTCCACTATCTGCCC 59 19769816 19769893 GACATTGAGTAAGAATGGCT 57 NA DesignRelaxed Drosophila melanogaster 50 CG7048 FBgn0038976 FBtr0084257 2 1 1 149 3R 18313401 18313419 GGTTCGTCATAGACATCGG 59 18313593 18313611 CTGAGTTATAGAAGCGCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG6028 FBgn0038924 FBtr0084187,FBtr0084186 3 2 2 63 3R 17850248 17850267 GATGTGATCAATCGTCTGTC 58 17850204 17850222 TTCCGGTGACTATGATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DNApol-alpha180 FBgn0004493 FBtr0084115 1 1 1 80 3R 17495950 17496035 CGACAATTTCTCTTAGATCCC 58 17495890 17495910 GTCGAACTCCTTGTATATGTC 57 NA Drosophila melanogaster 50 CG7922 FBgn0038889 FBtr0084109 3 1 1 94 3R 17309566 17309680 CAACACTTTCAGGCAAACC 59 17309738 17309756 CTGTGTTGAAGGAGTAGCC 59 NA Nonspecific Drosophila melanogaster 50 CG6475 FBgn0038886 FBtr0113260 1 1 1 97 3R 17225165 17225183 ATCACACCGCTATCATTGG 59 17225034 17225104 ATCATCGCAGATATGTCCG 59 NA Drosophila melanogaster 50 CG17273 FBgn0027493 FBtr0083991 3 1 1 278 3R 16651604 16651624 GATAAGGTTCGTCCCTATGTC 59 16651282 16651365 GCCAATATCATTTAGCTGCT 58 NA DesignRelaxed Drosophila melanogaster 50 Pi3K92E FBgn0015279 FBtr0083940,FBtr0083941 1 2 2 83 3R 16457025 16457246 GCTTACACTTTCTGAAAGACG 59 16456962 16456980 TTTCCAGGTACGATTCGTG 59 NA Drosophila melanogaster 50 CG34118 FBgn0083954 FBtr0110821 2 1 1 94 3R 16306477 16306495 ATAGAGTCCTTTACGAGCA 57 16290819 16306419 TGTCTACTGTTCAGTTGGA 57 NA InUTR Drosophila melanogaster 50 Pk92B FBgn0014006 FBtr0083818,FBtr0083819 1 2 2 80 3R 15708427 15708448 GATATGATCCTGGAGATGACTG 59 15708486 15708573 GTACTCGTACTCGATATTAGCG 59 NA Drosophila melanogaster 50 CG15025 FBgn0038709 FBtr0083768 1 1 1 60 3R 15316150 15316301 TCTAAGCCTTCTGTATCCG 58 15316108 15316132 CTATATCCTTGATACTCCTAGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NP15.6 FBgn0027785 FBtr0083712 1 1 1 93 3R 14853271 14853289 GAAGGATGAGACCATCACG 59 14853346 14853364 GTAGTCGAATCCGTAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14294 FBgn0038656 FBtr0083726 1 1 1 60 3R 14727659 14727680 GTATTGGATAGTGCATACACTG 58 14727620 14727639 GCTCACCACTGTAGAATACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7708 FBgn0038641 FBtr0083669,FBtr0083668 3 2 2 99 3R 14509014 14509032 CTTCTGTCCTATGTTGCAG 57 14509095 14509243 AATCTGTCTCGTTCCAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 mRpS11 FBgn0038474 FBtr0114468 1 1 3 100 3R 12898898 12898957 TCACAAAGTATCCCTCTTTCC 59 12899019 12899037 CTTGAGCTGCTATGTTGGT 59 NA Drosophila melanogaster 50 CG31274 FBgn0051274 FBtr0083369 2 1 2 62 3R 12819335 12819355 CGTAAACCTGGACATAAACAC 59 12819379 12819461 TTGTTGATCCACAAGATCC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31088 FBgn0051088 FBtr0083241 3 1 1 102 3R 11776408 11776488 TTGGAGTACTACATCAGCA 57 11776247 11776265 GCATTGCATAAGCTAAGCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG9597 FBgn0038371 FBtr0083190 2 1 1 60 3R 11664356 11664376 TGTTCTAGGAGCTAGAAAGAG 58 11664316 11664334 GTTGCCTGTAGATGTTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pxb FBgn0053207 FBtr0083162,FBtr0083161 1 2 2 85 3R 11497624 11497642 ATCGAGGAGGTATACCACC 59 11497691 11497709 AGTTCCATCATATCCAGCA 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG31302 FBgn0051302 FBtr0083097,FBtr0083098,FBtr0083096 1 3 3 127 3R 11211329 11211407 CTAGATTTGGACACTCGCA 59 11211498 11212200 TCCTCTGGAGGATCATAGG 59 NA Drosophila melanogaster 50 CG8508 FBgn0038123 FBtr0082783 2 1 1 60 3R 9012028 9012046 CAAGTTTATGTGGAGGCTG 58 9011986 9012005 ATAATAGCGGTTCTTTGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33631 FBgn0053631 FBtr0091608 2 1 1 60 3R 5889833 5889902 TCAGAAACCGATACTTCGT 58 5889926 5889944 CTTCATAAAGCGAGAGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sage FBgn0037672 FBtr0081983,FBtr0081982 2 2 2 63 3R 5088834 5088852 AAGCTACCCATATCCAAGC 59 5088728 5088807 TGGCAATCCTCAAACTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pum FBgn0003165 FBtr0081994 1 1 5 106 3R 4982876 4982894 TGGATTACATCACTGGCTG 59 4906735 4924427 GAAACAGTTGTTGATTGTGG 57 NA DesignRelaxed Drosophila melanogaster 50 CG11755 FBgn0037611 FBtr0081903 3 1 1 61 3R 4504238 4504256 GATCCTTTCCAACCACCTC 59 4504279 4504299 CCCATTGCGATATAGTATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15580 FBgn0037398 FBtr0078622,FBtr0078621 1 2 2 80 3R 1881012 1881141 AAGAATACCCGAATCCTATACG 59 1880953 1880972 CACTATCATGTCCACTTCGA 59 NA Drosophila melanogaster 50 CG34112 FBgn0086608 FBtr0110805 3 1 1 61 3R 219579 219597 TTCTTTGACGGAGGATCTG 58 219477 219556 GTTAGATATGGGCTCTTCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aux FBgn0037218 FBtr0078965,FBtr0078966 2 2 2 125 3R 52069 52087 AAGGATACTCCTTTGGCAG 58 52175 52264 TCTTACCATCAGTCCATTCC 58 NA Drosophila melanogaster 50 CG34410 FBgn0085439 FBtr0112678,FBtr0112677 3 2 2 200 3L 21326357 21326460 TTTAATAGGCAACAAGGCC 57 21327025 21327043 TTGAACTTTCCATCATCGC 58 NA Nonspecific Drosophila melanogaster 50 CG10508 FBgn0037060 FBtr0078304 1 1 4 120 3L 21208105 21208123 ATCAATGACGTCCTCATCG 59 21208206 21208688 GACATAATCGGCTTTCAGTG 58 NA Drosophila melanogaster 50 CG32428 FBgn0052428 FBtr0078222 2 1 1 61 3L 20465780 20465798 GTGTACACCAAGAGATGTC 57 20464245 20465755 AAATCATTGCAGTACTGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8533 FBgn0036907 FBtr0074877,FBtr0114601,FBtr0074878,FBtr0074876 1 4 4 169 3L 19794992 19795010 CATCTTCGACTACAAGCCT 59 19795205 19795274 ATGGTTCAGATGTGTCCAC 59 NA Drosophila melanogaster 50 CG14087 FBgn0036868 FBtr0074996 1 1 1 60 3L 19380827 19380845 CAAGCAGGATGAATTCCAG 58 19380869 19381039 CTTTGGGTCACGTCTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075008 2 1 11 86 3L 19297155 19297240 ATGCACAATAGCAAGATCAC 58 19297088 19297106 GTTCTTGCGAATCATTTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6839 FBgn0036831 FBtr0075069 3 1 1 61 3L 18911646 18911664 AATTACCTTCCAAACGGCT 59 18911689 18911707 CTTGGGTGTACAGTTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7441 FBgn0036763 FBtr0075141 1 1 1 87 3L 17843610 17843628 AGTCCCGTCTTCTAAAGGA 59 17843679 17843885 TGAGTGGACTTGTAAAGCA 58 NA Drosophila melanogaster 50 CG5589 FBgn0036754 FBtr0075170 2 1 1 111 3L 17796349 17796368 TTCGTACATTCATCGGATCG 59 17796196 17796275 TATTATAAGCGCGATGCCT 58 NA Drosophila melanogaster 50 Oatp74D FBgn0036732 FBtr0075173 1 1 1 80 3L 17494564 17500728 ACGCCTAACAGAAATACAC 57 17500771 17500790 GTAGATTGGTTGATCTGGTC 57 NA InUTR Drosophila melanogaster 50 CG32165 FBgn0042178 FBtr0075312 3 1 1 132 3L 16590014 16590032 GTGCTTACCTTTGTAGGCA 59 16590128 16590202 AATCATCGTCACCTTCCTC 59 NA Drosophila melanogaster 50 CG16838 FBgn0036574 FBtr0089713,FBtr0089714 3 2 2 210 3L 16128868 16128886 TTGATAAGCCGGTTCAGAG 59 16129469 16129487 TAATCCGTCGTGAAACTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Eig71Ek FBgn0014851 FBtr0075575 3 1 1 131 3L 15654539 15654560 GATTTACATCCAGAATAGGACG 58 15654652 15654726 AAATCAGAAGACAGGTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12316 FBgn0036483 FBtr0075651,FBtr0075652 2 2 2 102 3L 15128060 15128080 GACCATATTGAATCATCTGCG 59 15127561 15127996 AGAACTGAGAACCACTTCG 59 NA Drosophila melanogaster 50 CG13474 FBgn0036439 FBtr0075711 3 1 1 60 3L 14690019 14690037 TTCAACTGAGCAATAGCGA 59 14689977 14689998 GAGTCACAACTTCCTATAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13474 FBgn0036439 FBtr0075711 1 1 1 60 3L 14690020 14690038 TTTCAACTGAGCAATAGCG 58 14689978 14689998 AGTCACAACTTCCTATAGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mpcp FBgn0026409 FBtr0075718,FBtr0075719 3 2 2 178 3L 14532000 14532018 CAGACTATTCCCGGATACG 59 14532160 14532661 ACCACATACTTGTAGAGCA 57 NA DesignRelaxed Drosophila melanogaster 50 CG10133 FBgn0036366 FBtr0075825 2 1 1 60 3L 13442727 13442746 GAGGAATTTACCCTACAGGC 59 13442686 13442705 GGTTCAATGTAGAACTGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10660 FBgn0036288 FBtr0075976 3 1 1 103 3L 12481308 12481663 GAAATATAGGTTCCGTCACCT 59 12481225 12481243 ATCTTTGATAGGCAGCCAC 59 NA Drosophila melanogaster 50 wls FBgn0036141 FBtr0076218 3 1 2 201 3L 11161301 11161322 CATGATATGGAAGGTGTTTAGG 58 11160689 11160919 CTTGAAGCGATAGATAAGACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6628 FBgn0036072 FBtr0076311 3 1 1 177 3L 10159648 10159666 AACTCTGGTCAGAACTTGG 59 10159431 10159507 AATTGCGAATGGAATCTCC 58 NA Drosophila melanogaster 50 CG34427 FBgn0085456 FBtr0112728 3 1 1 135 3L 8798560 8798578 TTCAACTGTAACCACCGAG 59 8798675 8798761 GTAACAACTAATGTAGCGCTG 59 NA Drosophila melanogaster 50 Srp9 FBgn0035827 FBtr0076750 2 1 1 69 3L 7929588 7929606 AGAACTGGGATGATTTCGA 58 7929639 7929657 GTAAGTCGACAGTTCTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112696,FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112697,FBtr0112702,FBtr0112698 2 8 10 92 3L 7703513 7703532 GATACTCGTGGAAAGGTCAG 59 7703375 7703460 ATGGTCATTATCGAGAAGCAG 59 NA Drosophila melanogaster 50 CG6592 FBgn0035669 FBtr0077044 2 1 1 84 3L 6053712 6053730 CTACCCTACCTGGAATCCA 59 6053778 6053854 GATGCGCTCATTAAAGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32250 FBgn0052250 FBtr0073287 1 1 1 82 3L 4319226 4319244 TATCCACTGGATACAGTGC 58 4320168 4320186 ATCTCCTTGATCACTTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 Hexo1 FBgn0041630 FBtr0073235,FBtr0073237,FBtr0073236 3 3 4 98 3L 4289086 4289104 GTTGACGAAATGAAGTCGA 58 4289166 4289258 GTAAACCAAGTCATCCGAG 57 NA InUTR Drosophila melanogaster 50 CG1136 FBgn0035490 FBtr0073203 3 1 1 91 3L 4057521 4057539 CTACATTGCCGATAAGCAG 58 4057594 4057668 TGGATTTAATGGCGTCCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG32266 FBgn0052266 FBtr0073147 1 1 1 123 3L 3791333 3791353 CTGTACAACGATAATTCCCGA 59 3791438 3791456 TTAATCTGCAGTTGCTCCA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14959 FBgn0035427 FBtr0073048 2 1 3 97 3L 3267227 3267245 CTCATTCGATTGCAAGAGG 58 3267443 3267680 CGTTCAGTAATCCCTCCTC 59 NA Drosophila melanogaster 50 pfk FBgn0035405 FBtr0073028,FBtr0073027 2 2 2 137 3L 3160099 3160190 GAATCATCTTAAGTGGATGGG 58 3160289 3160307 CTTAGCACGAATAGATGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32305 FBgn0052305 FBtr0072876 3 1 1 85 3L 2250639 2250660 CATGATTAAGTACACCATGCTC 59 2250705 2250782 CAGGGTATGTAGCTTCTTCG 59 NA Drosophila melanogaster 50 CG1140 FBgn0035298 FBtr0072843,FBtr0072844 2 2 2 83 3L 1966297 1966373 GATGATTCCTGGCAAACTG 58 1966420 1966438 ATGGTGATGATCACCTTGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG9133 FBgn0035198 FBtr0100645,FBtr0100647,FBtr0100646 2 3 3 62 3L 1254991 1255009 ATCATGGACACCATGAAGG 59 1255035 1255496 GTAGCAAACCTCGATACCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG3402 FBgn0035148 FBtr0072559 3 1 1 168 3L 652265 652451 CGGATTATGGCATCTATGTG 58 652116 652134 ACCAGCATGTTGAGTATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG7028 FBgn0027587 FBtr0072528 1 1 1 80 3L 209370 209465 GGACTCTAATTTCGATTCACC 58 209310 209328 TCCCAATTGTCTGTGAGAG 58 NA Drosophila melanogaster 50 snoRNA:Psi18S-1347b FBgn0083053 FBtr0113514 2 1 1 75 2R 14030551 14030572 GACTAAGATTCATAGTTGCCAG 58 14030608 14030626 TGTTATGCAGATGGTATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33398 FBgn0053398 FBtr0086390 1 1 1 62 2R 15637112 15637130 AATACATCGGTTCTCGTCC 59 15637068 15637086 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15861 FBgn0035084 FBtr0072410 3 1 1 119 2R 20831282 20831358 CAATCTGTGATCACAACTGC 59 20831182 20831200 TAGGTCAATAGTTCCCGGA 59 NA InUTR Drosophila melanogaster 50 tamo FBgn0041582 FBtr0072281,FBtr0072282 2 2 2 152 2R 20017462 20017545 ACTCTCAAGACCTATTCGG 58 20017328 20017346 AACATTCGTAACCTGATCC 57 NA Drosophila melanogaster 50 CG3907 FBgn0034958 FBtr0072195,FBtr0072196 1 2 2 96 2R 19908023 19908097 GAGAAAGAGATAACGCTGG 57 19907945 19907963 TAATATTGCCCATGCTCTG 57 NA Drosophila melanogaster 50 Sox14 FBgn0005612 FBtr0072158,FBtr0072157 3 2 2 60 2R 19872011 19872029 AGACAACATTGTGAACGAC 58 19872050 19872071 CACATATGGAGGTATTTGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13566 FBgn0034942 FBtr0072206 3 1 1 82 2R 19849570 19849588 TCAAACTATGGCACCTGTG 59 19849452 19849528 GTGAAGAATATCAGTAGTCCCTC 59 NA Drosophila melanogaster 50 CG34423 FBgn0085452 FBtr0112724 2 1 1 211 2R 19246284 19246302 AGATTCAGTAGGTTTCGCG 59 19246477 19246555 GCTGCTTGTAGAAGAACTC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Gr59d FBgn0041236 FBtr0071976 1 1 1 60 2R 18992559 18992578 GCTACGCTTATTTCAGTGAG 58 18992518 18992537 TTGTTTGGTAGAGGAGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dve FBgn0020307 FBtr0071776,FBtr0071775 2 2 2 126 2R 18168265 18168283 CCAATATCGAGACCGACAG 59 18168373 18168504 ATTAATGAGCCTCTGGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG17974 FBgn0034624 FBtr0071611 2 1 1 84 2R 17236801 17236879 CCCATATTTGAGGACTACGG 59 17236736 17236757 GAGTAAATCTCATGATGGAGCA 59 NA Drosophila melanogaster 50 CG9236 FBgn0034558 FBtr0071516 3 1 1 115 2R 16768651 16769708 TTATGATTTCGATCAGGACGG 59 16769785 16769803 TTACCTTGTCGGCAATCTG 59 NA DesignNoJunction Drosophila melanogaster 50 mei-W68 FBgn0002716 FBtr0086461 3 1 1 158 2R 15345786 15345809 GTGGACTATACTATGACAATCCTC 59 15345984 15346002 TCATCAGCAGCCTTAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7097 FBgn0034421 FBtr0086504,FBtr0086503 2 2 2 80 2R 15104011 15104252 CATAACCGCAATCGAACTG 59 15104296 15104314 TTCGACATCAGGAATAGGG 58 NA Drosophila melanogaster 50 CG10953 FBgn0034204 FBtr0086997 2 1 1 153 2R 13053258 13053276 TTAAGTCCTATGTGCCACC 58 13053123 13053141 ATCTCCTCCAGAACCTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30463 FBgn0050463 FBtr0113380,FBtr0113379,FBtr0087112,FBtr0113381,FBtr0087113 2 5 5 184 2R 12568513 12568531 CATATTCCGGAAACGTTCG 58 12566563 12566646 ACTTGAGATCGTTACGGAG 58 NA Drosophila melanogaster 50 CG5089 FBgn0034144 FBtr0087107 3 1 1 60 2R 12486958 12486977 GATTATCGAACAGAATCGCC 58 12486997 12487018 ATTAGTTTCCCTCCTAGATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34186 FBgn0085215 FBtr0112379 3 1 1 127 2R 11032888 11032909 GCAATGACCTATATTTGTGGAG 59 11032583 11032689 TCAAAGACAACAAGACGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG13350 FBgn0033890 FBtr0087606 2 1 1 63 2R 9869156 9869174 GTGCTAACCATACCAGGAC 59 9869111 9869129 AAACAACCATTAGGCTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6191 FBgn0027581 FBtr0087678 1 1 1 80 2R 9470345 9470366 CATCTTTGAGAACCAAATGGAG 59 9469354 9470306 TTCTCATAAGTGAAGCACCTC 59 NA Drosophila melanogaster 50 CG17034 FBgn0033837 FBtr0087708,FBtr0087707,FBtr0087710,FBtr0087709 1 4 4 91 2R 9306578 9306660 CTGCAAACTCGTACATAATACC 59 9306508 9306526 TCATCACTTCGGAGATGTC 58 NA Drosophila melanogaster 50 CG34438 FBgn0085467 FBtr0112739 3 1 1 118 2R 9021204 9021222 AATGAGAACGCAAACATGG 59 9021304 9021398 CTCGAATAGGTCGTAAGCA 58 NA Drosophila melanogaster 50 CG30047 FBgn0050047 FBtr0087905 1 1 1 80 2R 8241560 8241637 CACGATCGAGGATACTATTGG 59 8241674 8241697 GTAGAATAGGTAGCAGAAGTACAG 59 NA Drosophila melanogaster 50 Cam FBgn0000253 FBtr0088002,FBtr0088001 1 2 2 93 2R 8156864 8156882 GAAACTCACAGACGAGGAG 59 8156936 8161287 CATCATAGTCACGAATTCTTCG 59 NA Drosophila melanogaster 50 Buffy FBgn0040491 FBtr0088077 3 1 1 66 2R 7575228 7575323 ATATCATTTCTCAGGGTCGT 58 7575352 7575370 AAACCAGATCTTCTGAGGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13226 FBgn0033594 FBtr0088108 1 1 1 60 2R 7132164 7132182 TATGGTGGATACCAGAGAC 57 7132206 7132224 CACTGGAGCTATAAGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1648 FBgn0033446 FBtr0088494 3 1 2 81 2R 5700240 5700258 TCAGCATGTTTCCTAGTCG 59 5700118 5700136 TTCTTCTTGCTGAAGAGGT 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG2065 FBgn0033204 FBtr0088922 1 1 1 103 2R 3551709 3551729 CCAGGATATTATCAGGGAGAC 58 3551794 3551868 CTTTCTTGAATCCAGCAGC 59 NA Drosophila melanogaster 50 CG30492 FBgn0050492 FBtr0088917,FBtr0088913,FBtr0113382,FBtr0088916,FBtr0088914,FBtr0088915 1 6 6 93 2R 3526397 3527215 CGGTGCTAAATAAGATTGTGG 59 3527270 3527288 AAATTCTCGTCAATGTGGC 58 NA Drosophila melanogaster 50 ubl FBgn0022224 FBtr0086211 3 1 1 84 2R 2697755 2697774 CAAAGCACGAGAAGATTGTC 59 2697625 2697711 CCATCGTGAATTTCATAGTCAG 59 NA Drosophila melanogaster 50 CR12628 FBgn0042701 FBtr0085952 1 1 1 60 2L 22226250 22226269 CCGTATTCAAGAGTTTCACC 58 22226289 22226310 CTCATCAACAGCATATTGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His3:CG33860 FBgn0053860 FBtr0091864 1 1 1 60 2L 21530165 21530183 TCGAAGATACCAACTTGTG 57 21530207 21530225 ATGTCTTTGGGCATTATGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr39a FBgn0041244 FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510 1 4 4 60 2L 21297292 21297310 AAACAGCAAAGATGCTGAC 58 21297331 21297460 TCAATCATTCTATCCAACCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31680 FBgn0051680 FBtr0081383 2 1 1 62 2L 20640186 20640277 GGCTTTGTTCTAAGTGAATCC 59 20640301 20640319 ATTATGAAGCCTCCACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18806 FBgn0042129 FBtr0081307 2 1 1 60 2L 19966186 19966205 CATTCTCAGGGAGCTTAAGG 59 19966145 19966163 TGAATCATCGAAGTCCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scw FBgn0005590 FBtr0081261 1 1 1 60 2L 19700503 19700521 CTTCAACACCAACGATGTG 59 19700461 19700479 GTATATCCTGAGCATGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31797 FBgn0051797 FBtr0081227 1 1 1 60 2L 19261315 19261333 GCAAGGGAAAGATGAACAC 59 19261273 19261292 TCTACTATACAGCTGATCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31793 FBgn0051793 FBtr0081138 2 1 1 80 2L 19006227 19006247 CTGATAATGCTGTGTATTGGC 59 19006289 19006366 AGCTGTGTTCTTAACCCAG 59 NA Drosophila melanogaster 50 CG10650 FBgn0046302 FBtr0081183 3 1 1 85 2L 18995650 18995671 TGTTTAACGAGTCCATCTACTC 59 18995006 18995604 CCACGAGTTAGAGTTCCTG 59 NA Drosophila melanogaster 50 Mst36Fa FBgn0086681 FBtr0081074 2 1 1 190 2L 18675957 18676026 TGTTCGAAAGGAAATCAGC 58 18675785 18675803 CTCATACATGAGTCCGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 Acp36DE FBgn0011559 FBtr0081054 3 1 1 98 2L 18358879 18358897 GGACATTCTTAGTCCTCCG 59 18358740 18358817 ATCACTTGTGAAGACTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 beat-Ic FBgn0028644 FBtr0080801 2 1 1 94 2L 16034701 16037146 TAATGGTATTGTGGTGCCA 58 16037203 16037222 AATGTATGGCACTTGTAACC 58 NA Drosophila melanogaster 50 Adh FBgn0000055 FBtr0100594,FBtr0100591,FBtr0100589 3 3 5 100 2L 14616350 14616368 TTTGACCAACAAGAACGTG 58 14616432 14616515 GGATCACCAGGTTCTTCAG 59 NA Nonspecific Drosophila melanogaster 50 CG16884 FBgn0028544 FBtr0080557 3 1 1 96 2L 13946039 13947098 GAAAGTATTCATCTGCTTAGCC 59 13945964 13945982 CTTGTCCAGCTTCTTCTCC 59 NA Drosophila melanogaster 50 CG5787 FBgn0032454 FBtr0080405 3 1 1 165 2L 12709472 12709490 TTACCAATTCCAAGTCCAC 57 12709260 12709278 ATAGAGGGAAAGACAGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31864 FBgn0051864 FBtr0080288 2 1 1 119 2L 11996125 11996144 ATCTGACCAATTTCTACGGA 58 11996226 11996244 ATCATTGCAGTCCAATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31757 FBgn0051757 FBtr0080321 2 1 1 141 2L 11835098 11835116 AGATGCTCTTAACAAAGCG 58 11830831 11833279 CCTTGATTCGTCTATGAAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 sala FBgn0003313 FBtr0080237 2 1 1 86 2L 11486211 11486300 TGAAACTACTGATTGCTCTG 57 11486349 11486367 CTCCATATCCTCCTTGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lectin-33A FBgn0040096 FBtr0113317 1 1 1 60 2L 11002522 11002540 GAGGATTGTGTTGGATTCG 58 11002562 11002582 TGCACTCTATATCGTGATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5343 FBgn0032248 FBtr0080044 3 1 1 69 2L 10430377 10430451 CTTCGAGGTTCAGGTTCTC 59 10430326 10430344 TGTCGACTGGTAGTTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13138 FBgn0032211 FBtr0080066,FBtr0080067 2 2 2 60 2L 10300312 10300332 CCATTCTCCATACCATTTCAG 58 10300272 10300292 GTATAGGACTTTGAAAGGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4901 FBgn0032194 FBtr0079947 2 1 1 78 2L 10212203 10212221 AAGATTACATCCACACCGT 58 10212263 10212344 AATATCAACACGTCGTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG9483 FBgn0032072 FBtr0079738 3 1 1 60 2L 8866963 8866981 GGACTTAGTGTGATCCTGG 59 8867003 8867023 GGGTGTAACCTATAATGATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pes FBgn0031969 FBtr0079553,FBtr0114550,FBtr0079552 3 3 3 119 2L 7988318 7988403 CCGGGTATTACCTTGTATGAG 59 7988219 7988237 GACAATTAGCGGAACAAGC 59 NA Drosophila melanogaster 50 CG6441 FBgn0031920 FBtr0079451,FBtr0079450 3 2 2 152 2L 7476342 7476360 AAATTTACCAGCCATCTGG 57 7476609 7476628 GATTAGACATGGCAATCCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG31630 FBgn0051630 FBtr0079400 1 1 1 60 2L 7047204 7047225 GACGAACAAAGGTAAGAATGAG 59 7047246 7047264 GAAGACTCGGAACCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cort FBgn0000351 FBtr0079320 3 1 1 81 2L 6675691 6675767 CTATCCAGTTCTGGACCTC 58 6675628 6675646 CATGGACTTGAAGAACAGC 58 NA Drosophila melanogaster 50 Tig FBgn0011722 FBtr0079275 3 1 1 67 2L 6422300 6422318 GAAATTCAACGTCCTCTCG 58 6421943 6422269 AAATAGAAGCACTCCAGGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG9140 FBgn0031771 FBtr0079216 3 1 1 81 2L 6061112 6061195 CATGACTCGATTTGTTAAGGG 59 6061051 6061070 GTGTCCCTCAATTTGTTTGG 59 NA Drosophila melanogaster 50 dsf FBgn0015381 FBtr0079145 3 1 1 73 2L 5928131 5928149 TATGGAATCTACAGCTGCG 59 5928243 5928261 CAGGTGTAAATCCGATTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14010 FBgn0031725 FBtr0079116 2 1 1 159 2L 5609887 5609905 TATACTCACATGACTGCCG 58 5606158 5608799 ATGCTCATAACCTCCTCTC 58 NA Drosophila melanogaster 50 Sr-CIII FBgn0020376 FBtr0077466 2 1 1 143 2L 4121187 4121268 CAGAAATATCTGCACCAAACTC 59 4121372 4121390 CCAATGTCTCCATGGAGAG 59 NA Drosophila melanogaster 50 CG3921 FBgn0031571 FBtr0077496 1 1 1 80 2L 3796816 3796834 CGTCGAACAACCTATTCCA 59 3796878 3796958 GCAAAGATACCTGAAAGCC 58 NA Drosophila melanogaster 50 sec5 FBgn0031537 FBtr0077519 3 1 1 106 2L 3458109 3458127 GATACGCTGATGAACATCC 58 3458196 3458269 GATTCGCTAATGGAGTTCTC 58 NA Drosophila melanogaster 50 CG17262 FBgn0031499 FBtr0077666 2 1 1 85 2L 3039325 3039344 TTGCTAAAGGTCCATCTGAG 59 3039195 3039278 GAAATAAGGCAGTACAACCC 58 NA Drosophila melanogaster 50 CG3165 FBgn0031484 FBtr0077642 2 1 1 75 2L 2977472 2977490 ATTGAATGTGCTCTTCCAG 57 2977529 2977603 CAAGTAGTTGCTCAGACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NTPase FBgn0024947 FBtr0077680,FBtr0077683,FBtr0077681 3 3 4 143 2L 2882504 2882702 CTTTGTCTTTGGCTTCGTC 59 2882379 2882397 CGATTGAACTTGTAGGCCA 59 NA Nonspecific Drosophila melanogaster 50 CG15400 FBgn0031463 FBtr0113017 2 1 1 173 2L 2814951 2814969 GGGAATTAGGTCTCTTTGC 57 2814746 2814814 CATTTAAATGCCTCTCGCA 58 NA Drosophila melanogaster 50 CG17301 FBgn0031442 FBtr0077697 3 1 1 82 2L 2653234 2653303 GACGAGGTCAGAAAGACTC 59 2653349 2653367 GAGAACTTCAGGCAGTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18317 FBgn0031359 FBtr0077910 3 1 1 73 2L 1718715 1718735 GCTAAGCACAACGATATTACG 59 1718479 1718680 AAATGGCCATGATCCTACG 59 NA DesignRelaxed Drosophila melanogaster 50 cpb FBgn0011570 FBtr0077881 3 1 1 61 2L 1705705 1705723 CTTCGATCAGTACAGGGAG 58 1705748 1705766 GATCCCATAGGTAGACGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5561 FBgn0031333 FBtr0077947 1 1 1 61 2L 1353828 1353895 TGTCTTTGATACTCGCCAC 59 1353785 1353803 TATCGTAACAACGGACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12506 FBgn0031276 FBtr0078003 2 1 1 68 2L 773847 773865 AACAGTACCACAACTTCGA 58 773897 773915 CGAAGAGGAAACCTCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2807 FBgn0031266 FBtr0078068 1 1 1 128 2L 568433 568617 GATATCGAGGCACAGATCAG 59 568708 568726 ATCATCGTCGTACAAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 U2af38 FBgn0017457 FBtr0078133 2 1 1 73 2L 294108 294126 AATCGAGGAGATGAACGTG 59 294053 294074 CGTTACGGAATTTGATGTACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32506 FBgn0052506 FBtr0077309 3 1 1 81 X 20335194 20335212 AATATGGATGCCCTACAGC 59 20335257 20335830 GGAGTTCGCTACTGTAGAC 59 NA Drosophila melanogaster 50 D2R FBgn0053517 FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461 3 4 5 81 X 19905587 19920745 ACTTTCTGGTAAATGGAGC 57 19905524 19905544 GAAGTAGAGCATATCACATCC 57 NA Drosophila melanogaster 50 D2R FBgn0053517 FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461 3 4 5 81 X 19905587 19920745 ACTTTCTGGTAAATGGAGC 57 19905524 19905544 GAAGTAGAGCATATCACATCC 57 NA Drosophila melanogaster 50 Arpc3B FBgn0065032 FBtr0113478,FBtr0074410 3 2 2 62 X 16999561 16999579 CATCATCGATGAGTCACTC 57 16999517 16999535 TTAACTTCGTAAGTGCGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Axs FBgn0000152 FBtr0074372,FBtr0100417 3 2 2 81 X 16576145 16576242 CACGATATCCTGTATCTCGA 58 16576083 16576101 CAAAGTAGTTCCGGATGTC 57 NA Drosophila melanogaster 50 CG2186 FBgn0030243 FBtr0073381 2 1 1 232 X 10752389 10752407 ATGAGTTGCTACTCTCGGA 59 10752668 10752686 AGATGAAGCTAGCTCTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 flw FBgn0000711 FBtr0071446,FBtr0071447 3 2 2 80 X 10301263 10301281 ATTACTGTGGAGAGTTCGA 57 10301324 10301408 GTTTCAGGATCTGGAATGAG 57 NA Drosophila melanogaster 50 otu FBgn0003023 FBtr0071236 3 1 3 147 X 8381021 8381624 GACTATAACTTTAAGGTCCCG 57 8380894 8380912 ATTTGGAAGACTTGTTGGC 58 NA Drosophila melanogaster 50 MAPk-Ak2 FBgn0013987 FBtr0070837,FBtr0070838,FBtr0070839 1 3 3 94 X 5654849 5655215 TAGACTACGATCAGATGCA 57 5654773 5654792 GTATAACTCCATCTCCTCGA 57 NA Drosophila melanogaster 50 mRpL30 FBgn0029718 FBtr0070682 2 1 1 64 X 4542275 4542294 CTAAAGGGCAATCCCTACTG 59 4542321 4542339 CTCTGCTTTCCGTCTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 3 13 13 81 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567131 2567221 CTGTATTGAGAGCTCATGCT 59 NA Drosophila melanogaster 50 CG41234 FBgn0085564 FBtr0114007 2 1 1 126 U 383171 383189 GTTCTGGTAGAGTTCGGAC 59 380484 380502 GCTATAGTCACCGATCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Syt7 FBgn0039900 FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475 2 5 6 155 4 323148 325656 TAGTTATAGTCTTCGGGCTG 58 323012 323033 CCAATCAAAGGAGTTCTAAGAC 58 NA Drosophila melanogaster 50 CG34433 FBgn0085462 FBtr0112734 3 1 1 60 3R 26476157 26476175 GATCTTCCACTACCTTCGT 58 26476199 26476217 CAGGTAGAGTATTCCGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14531 FBgn0040619 FBtr0085312 2 1 1 70 3R 24632875 24632893 ACAGGACATGTTATGAACG 57 24632980 24632998 GTATCCAGAATGAGCTTCG 57 NA DesignNoJunction Drosophila melanogaster 50 Sce FBgn0003330 FBtr0085245 3 1 1 113 3R 23507120 23507138 GTAATGGAAATGGTGCTGC 59 23507025 23507043 TATCATTGGAGGCTGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL27 FBgn0039359 FBtr0084932 1 1 1 60 3R 21509985 21510005 AGCCTGAACTACAATCATCTG 59 21509945 21509963 TCTCAAAGCTGATGTCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17141 FBgn0039020 FBtr0084322 2 1 1 60 3R 18572546 18572564 TAAGGATGATGAAATGGGC 57 18572504 18572522 CACAATATGATCGGGAAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cad89D FBgn0038439 FBtr0083306 2 1 1 80 3R 12316386 12316404 ACTCATCACCAATCTCACC 58 12316240 12316345 TTGATCTCTTCTATGACAGGTC 59 NA Drosophila melanogaster 50 RpS5b FBgn0038277 FBtr0083006 2 1 1 124 3R 10727103 10727121 GATGTCGTTACCACAATGC 59 10726997 10727015 TTTACGGCAATGTAGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 flfl FBgn0024555 FBtr0114604,FBtr0082817 1 2 2 160 3R 9513945 9514076 AGATATGTCAGGTGCAAGG 59 9514200 9514218 TATCGTTTCCGAGATGTCC 58 NA Drosophila melanogaster 50 mRpS21 FBgn0044511 FBtr0082764 2 1 1 117 3R 9207344 9207362 CTGTTAAATCGCGTCTTGG 59 9207186 9207204 AAATGGCCTTGCATTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6234 FBgn0038071 FBtr0082648 2 1 1 81 3R 8476859 8476936 CATGAAATTAAGCTTGCGGT 59 8476977 8476998 CTTCATCGATTGTCTTTGACTC 59 NA Drosophila melanogaster 50 dpr15 FBgn0037993 FBtr0082549 1 1 1 89 3R 7969207 7969225 TAGTCAAACTGGATTCCGG 58 7965844 7969154 AATATTCACCGTTCAGCAC 58 NA Drosophila melanogaster 50 pug FBgn0020385 FBtr0100144,FBtr0082266,FBtr0082264,FBtr0082265 2 4 4 151 3R 6525678 6525696 TAAGGATTGTCCAGGTTGG 58 6525808 6525952 CAGATCGTTTATCTTATCGAGC 58 NA Drosophila melanogaster 50 PpD3 FBgn0005777 FBtr0082129,FBtr0082128 3 2 2 85 3R 5575740 5575758 GAGGTTAAGGATATGGGCT 58 5575804 5575881 CCCATAGTATCACAATAGTTCG 58 NA Drosophila melanogaster 50 CG31284 FBgn0051284 FBtr0081754,FBtr0081755,FBtr0081753 1 3 3 117 3R 3720343 3723577 CAAATAACCGCTTCAAATCG 58 3723657 3723675 CCACACTCCATGTATTCGA 59 NA Drosophila melanogaster 50 CG18268 FBgn0037520 FBtr0081772 3 1 1 107 3R 3628932 3629012 GTTAATATGGCTCTTAGCCAG 58 3628845 3628863 TTCACAATGTTTGCTCAGC 59 NA Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078818 2 1 15 119 3R 1121454 1121473 AGACGATGAAGACAAGAAGG 59 1120593 1121372 AAACAATAGCGGTCTTTGC 59 NA Drosophila melanogaster 50 5-HT2 FBgn0013743 FBtr0078854,FBtr0078855 3 2 3 224 3R 453861 453880 TTAGTTTCCGTAATGTCGTG 57 454067 455864 AATGTATGGCCAGTCTGTC 59 NA DesignRelaxed Drosophila melanogaster 50 Taf6 FBgn0010417 FBtr0074941 3 1 1 110 3L 19593327 19593345 TGCAAGAACTTCAATACCC 57 19593476 19593494 AATAGAGCCGTAAAGCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14098 FBgn0036884 FBtr0074936 1 1 2 80 3L 19539055 19539243 CATTGTACAGGTTCATCTGTG 58 19539284 19539303 CGATGATTATTTGTCCCGTG 59 NA Drosophila melanogaster 50 CG11905 FBgn0036678 FBtr0075303,FBtr0075302,FBtr0075306 1 3 10 121 3L 16928316 16928334 ACTATTCACCAGAACCTCG 58 16926099 16926398 CTGCTTCTGAATTTCGACG 59 NA InUTR Drosophila melanogaster 50 CG13029 FBgn0036670 FBtr0075336 2 1 2 170 3L 16854332 16854351 GTTGGCCACACTAATTACAG 58 16854539 16854560 GCTCATTGGTTTGAGAAATAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17028 FBgn0036552 FBtr0075515 3 1 1 113 3L 15972436 15972455 CCTAATCGTGGTGTCTAAGG 59 15972591 15972609 ATATAGCAGAGCGTGAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13466 FBgn0036456 FBtr0075619 1 1 1 126 3L 14934893 14934911 GAGCAACCGCTACTATAGC 59 14935001 14935140 CGAGATGCAGGGATATCTG 59 NA Drosophila melanogaster 50 CG7906 FBgn0036417 FBtr0075741 2 1 1 248 3L 14230849 14230867 CAACCAAGTTCATCGAAGG 58 14231078 14231159 AACATTCTTGGTGTTGAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 nmo FBgn0011817 FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758 1 6 6 141 3L 8040250 8040352 GTCTTCGATCCGGATAAGC 59 8040457 8040475 AATCAGCCGTATACTGACG 59 NA Drosophila melanogaster 50 sif FBgn0085447 FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713 3 5 8 188 3L 5692112 5697030 GTTCCTTCGCAAGATTTCG 59 5698070 5698091 CGTAGTAACCATTTCTTTACCG 59 NA Drosophila melanogaster 50 CG17746 FBgn0035425 FBtr0073094,FBtr0073093 3 2 2 160 3L 3238653 3238671 CACAAGTACGTTCTCAAGC 58 3237972 3237990 AGCTTGTTGTCCTTTACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG13891 FBgn0035139 FBtr0072566 3 1 1 73 3L 433310 433329 AATAAGCATAACGTCGTCCA 59 433256 433274 GATCGGATTCCACCTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34140 FBgn0083976 FBtr0110975 3 1 1 85 3L 183692 183766 CTTTCTGCAATCTTCTAGCT 57 183626 183644 TGAAAGTTCGAAAGTCGTG 58 NA Nonspecific Drosophila melanogaster 50 CG16896 FBgn0035073 FBtr0072423 2 1 1 150 2R 20759351 20759370 AATTCGTAACCAGGAGATGG 59 20759157 20759238 TTCCATGGTCATATCACGC 59 NA Drosophila melanogaster 50 CG13594 FBgn0035041 FBtr0072336 3 1 1 63 2R 20503718 20508238 TCACGTAAATCCAGGTGAC 59 20503673 20503691 GACTCCTACTCCTGATTGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG13567 FBgn0034963 FBtr0072189 1 1 2 152 2R 19924623 19924641 CCCACTGAGTTTATTCACC 57 19924429 19924509 GAATAGTTCCCTAACGTTCAC 58 NA Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 2 8 8 98 2R 14032393 14032483 CAAGGAAAGAATTCTGAGAAGC 59 14032542 14032560 AATCATCGGATACAGACGC 59 NA Drosophila melanogaster 50 CG34318 FBgn0085347 FBtr0112518,FBtr0112517 3 2 2 96 2R 11354265 11354358 AGATTGTCATACAGACCGG 58 11354418 11354436 TCCTGCAGATACTTGATGG 58 NA Nonspecific Drosophila melanogaster 50 CG7639 FBgn0033989 FBtr0087423,FBtr0087424 1 2 2 80 2R 10876490 10876508 GGCCAATGATCTACAACTG 58 10876367 10876446 CTGAAAGACATTTCAGGCC 58 NA Drosophila melanogaster 50 CG34185 FBgn0085214 FBtr0112378 2 1 1 131 2R 10261454 10261531 CTGGATGAACTTGCTAGCT 59 10261341 10261360 TCAGTTAAAGAGTACGTCCC 58 NA Drosophila melanogaster 50 CG6357 FBgn0033875 FBtr0087638 1 1 1 92 2R 9728467 9728543 GGAGAAGTTCCTGATTGAC 57 9728599 9728617 ATCGACTTAAAGTTGTCGC 58 NA Drosophila melanogaster 50 CG8776 FBgn0033764 FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869 1 5 5 104 2R 8548250 8548271 CATAAGGTCAACTTCTATAGCC 58 8548111 8548185 CAGCATTACCAGAAAGCTG 58 NA Drosophila melanogaster 50 Fpps FBgn0025373 FBtr0088170 1 1 1 90 2R 7193594 7193672 CTTGGCTGGCTATAAAGAC 57 7193522 7193541 GAAATCATCTTGAACCTGGA 57 NA Drosophila melanogaster 50 CG30033 FBgn0050033 FBtr0088117 3 1 1 102 2R 7180097 7180115 GATCATCACTCCGTCACTG 59 7180239 7180258 AAATATTGGACCCACTACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 1 26 26 80 2R 6421013 6421095 AGTCCCTACTTTGCTACCT 59 6420951 6420970 CTCTTGGTACTTGACATCCT 58 NA Drosophila melanogaster 50 CG12126 FBgn0033280 FBtr0088801 2 1 1 79 2R 4150517 4150535 AAGAAGTCTCATCCAACCG 59 4150456 4150474 AAACTGATCAAAGGCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12159 FBgn0033232 FBtr0088889 1 1 2 165 2R 3803412 3803430 TGCTGCTTATTATGAGGGT 58 3802674 3802904 TAAACCTGAACCAACTCGA 58 NA Drosophila melanogaster 50 CG3409 FBgn0033095 FBtr0086140 2 1 1 81 2R 2589421 2589903 GAGGAGGAAGATACCTGGT 59 2589358 2589378 ACTTCATGTCCAGAAAGAGTG 59 NA Drosophila melanogaster 50 CG14590 FBgn0033061 FBtr0086022 3 1 1 61 2R 1967076 1967094 ATCTTCGACTAACGAAGCA 58 1967033 1967052 ATATTCCGTTGGATCGAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1962 FBgn0032876 FBtr0081399,FBtr0081400,FBtr0081401 2 3 3 60 2L 20680493 20680512 TAGTGGTGCGGATTATAAGG 58 20680452 20680470 GCTAGAGTTGGGATTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41072 FBgn0069951 FBtr0100401 3 1 1 119 2L 20257854 20257872 TCATACAGACGCTAAAGCC 59 20259505 20259523 CTTCTCTGACACTCTAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5343 FBgn0032248 FBtr0080044 3 1 1 65 2L 10430580 10430598 CAACGACATACAAAGCCTC 58 10430533 10430551 CATGTTATGAACGTGGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pten FBgn0026379 FBtr0089905,FBtr0089902,FBtr0089901,FBtr0089903,FBtr0089900,FBtr0089904 2 6 6 86 2L 10258782 10258800 TCAGCGTCGATATGTTCAG 59 10258643 10258735 CGTATTTCACATACGTTAAGGC 59 NA Drosophila melanogaster 50 CG13398 FBgn0032042 FBtr0079710 3 1 1 60 2L 8414663 8414683 GACGTTATGGGTTGAATAACG 59 8414623 8414641 CCAGACATACACCTACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11147 FBgn0031734 FBtr0079165,FBtr0079166 3 2 2 84 2L 5735356 5735374 GTAATGGAGGATGGCATCC 59 5735238 5735310 CTTGTTGATCCGTCATATCGA 59 NA Drosophila melanogaster 50 CG14030 FBgn0031696 FBtr0079069 1 1 1 110 2L 5281977 5282079 CATATGTGATCAGGTGCTG 57 5282153 5282171 AACTCGGTGGCTATTAGAC 58 NA Drosophila melanogaster 50 Eno FBgn0000579 FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905 2 4 5 84 2L 1727657 1727676 TTAAATTTGTGCAGATCCGC 59 1726602 1726620 GAGTCGTAGATTTGACGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2543 FBgn0030407 FBtr0073655 3 1 1 92 X 12508805 12508823 GATTACATCTGGACGGAGC 59 12508877 12508963 TCTTTGGATTGACACTGTCTC 59 NA Drosophila melanogaster 50 CG10352 FBgn0030348 FBtr0073599 2 1 1 91 X 11770089 11770107 TTTCCAGCTACAGAATCCG 59 11769954 11770036 CTCCAGGTCCTATGATTTCAC 59 NA Drosophila melanogaster 50 CG12470 FBgn0040371 FBtr0070069 2 1 1 60 X 202671 202690 TCTTCGATAATATGCACGAC 57 202713 202731 TATAGACGCGTCTTTCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Surf6 FBgn0038746 FBtr0083854 2 1 1 60 3R 15730386 15730404 TCTATCAGCGAGTCTTGGA 59 15730290 15730363 TCTTCTTGTTTGGAGTAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083209,FBtr0083210,FBtr0083205,FBtr0083204 3 8 8 81 3R 11780334 11780353 CACTTTGGATCCTTCTTGTC 58 11780394 11780478 CGAGAATGGTATTATCCTTGAC 58 NA Drosophila melanogaster 50 sqd FBgn0086897 FBtr0082854,FBtr0082857,FBtr0082856,FBtr0082855 3 4 4 252 3R 9468818 9468901 AACGACTGAGAAGGAACTC 58 9468584 9468602 CTCATCGCTGATCTCTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 Timp FBgn0025879 FBtr0082245,FBtr0082244 1 2 2 92 3R 6030548 6030566 TACAAGGAGTACACCAGGA 59 6030416 6030492 AAAGCAGGGAGTTACTGTG 59 NA Drosophila melanogaster 50 dpr11 FBgn0053202 FBtr0081704 2 1 1 120 3R 2358447 2358465 TTCATCATGTGGTACCACG 59 2357761 2358363 TTAATGAGCCAATCGTGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG4925 FBgn0036614 FBtr0075428 3 1 1 134 3L 16343301 16343405 CGTACTCAGAACACAATAAACG 59 16343188 16343206 AATTGTGAGTAGCTCCTGC 59 NA Drosophila melanogaster 50 CG1308 FBgn0035507 FBtr0073221 1 1 1 81 3L 4198924 4199006 CTGCAATAAGGTTTATTAGCGG 59 4199048 4199066 TGATCGTACAATCGAAGCA 59 NA Drosophila melanogaster 50 CG12084 FBgn0043458 FBtr0072711 2 1 1 88 3L 1492937 1492955 CAATCTACCTGCTGAACAC 58 1492799 1492886 GAACATGGTACTAACTACGC 58 NA Drosophila melanogaster 50 CG13512 FBgn0034760 FBtr0071864 2 1 2 87 2R 18548328 18548347 ATCAACTTACTGTATGGCGG 59 18548604 18548622 CTTGTAGCAACAGTTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9406 FBgn0034592 FBtr0071570 3 1 1 108 2R 17030280 17030350 GGATCGACAAATGGAACCA 59 17030419 17030440 CATTAATTTGCCGAAGTACTCC 59 NA Drosophila melanogaster 50 Cpr49Af FBgn0033729 FBtr0087921 2 1 1 60 2R 8293758 8293776 CGGTCAATGGAAAGTACTC 57 8293800 8293818 GTGTAGGACACAACATAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Corin FBgn0033192 FBtr0088909,FBtr0088908 3 2 2 88 2R 3446442 3446460 GTCAAGGTCCACAGATTCC 59 3446512 3446587 ATCCAAGTCCGTTTGAGTC 59 NA Drosophila melanogaster 50 CG2611 FBgn0032871 FBtr0081387 2 1 1 69 2L 20650646 20650664 GCTACTATGTGTACGTGCT 59 20650697 20650715 CTTCGTATCTCGTCCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13966 FBgn0032838 FBtr0081304 2 1 1 123 2L 19970557 19970575 CATCTCCTACACCATCGAC 59 19970173 19970191 TTGTACTTGACGTCCTTGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG10338 FBgn0032700 FBtr0081096 3 1 1 85 2L 18697684 18697705 TCAGCTTAAGGAGAAATACTGG 59 18697751 18697838 GATGGATTAGCCAACCCTC 59 NA Drosophila melanogaster 50 CG15143 FBgn0032647 FBtr0080993 3 1 1 84 2L 17523938 17524018 GACGCTTTACAGAGAATCCT 59 17523873 17523891 CAGTTCCAAGGTTTCAACG 59 NA Drosophila melanogaster 50 CG4440 FBgn0040984 FBtr0080835 1 1 1 79 2L 16329964 16329982 ACTCTTACTCCAGTATCGC 58 16330084 16330102 AAACAGAGCAATCAGACAG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG17104 FBgn0040496 FBtr0080105 1 1 1 80 2L 10678789 10678908 CATTGAGGAAACTACAGAACTG 58 10678949 10678967 GTTTCAGTGGTCTCCTCAG 59 NA Drosophila melanogaster 50 CG31873 FBgn0032206 FBtr0079986 2 1 1 79 2L 10270370 10270388 CAACAAGAAGAGATCGGAG 57 10270485 10270503 GGATCTCCACCGAATATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13392 FBgn0032033 FBtr0079720 2 1 1 145 2L 8382517 8382601 AAATAGGCGAAGTATGGTCG 59 8382391 8382409 GACAATCGGGAGGTAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7227 FBgn0031970 FBtr0079551 2 1 1 107 2L 7995686 7995770 GCAATATGGCAAATGGTACTG 59 7995599 7995617 TTCCATACCAACAGGAGGA 59 NA Drosophila melanogaster 50 Uch FBgn0010288 FBtr0077844 2 1 1 83 2L 2213548 2213624 AGCGAAACCTATGAGAAGC 59 2213483 2213501 GTAGAAGAGATCCTCGGGA 59 NA Drosophila melanogaster 50 CG4764 FBgn0031310 FBtr0077960 3 1 1 89 2L 1150925 1150943 ATTTAAGAAGCTGCTGGTG 58 1150996 1151014 GACTTCAGGTAGTCGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4577 FBgn0031306 FBtr0077957 3 1 1 135 2L 1139062 1139136 GAAGAGTGAGTAGCTCGAG 58 1139235 1139253 TCATCCACGTTGTAGTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 drongo FBgn0020304 FBtr0078035,FBtr0078036,FBtr0078037 1 3 3 193 2L 835454 835472 GATATGCCGCTCTTAAGGA 58 835217 835235 GAATGGATTCACCACATGG 58 NA DesignNoJunction Drosophila melanogaster 50 mt:tRNA:T FBgn0013707 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR31215 FBgn0051215 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR31631 FBgn0051631 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:M FBgn0044508 FBtr0070292 1 1 1 70 X 1376595 1376613 TTTCAACTTCACTGCTGAC 58 1376543 1376562 TGTATCTATCAGAGACTGGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 roX2 FBgn0019660 FBtr0073514,FBtr0073515 2 2 2 73 X 11473817 11473835 TAACGATTTCCGCATAGTC 57 11473870 11473890 CCAAATAGTCGTACTCATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41353 FBgn0083995 FBtr0111193 2 1 1 85 X 22367404 22367422 TTCCGTAGCTACGATTTGG 59 22381921 22381941 ACCAATGTAATATCTCCTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG40486 FBgn0069972 FBtr0111188,FBtr0111187 2 2 2 72 X 22361363 22361381 CTCATTAACAGCCTAACGG 57 22361309 22361327 GATACATGTTGAGCACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DIP1 FBgn0024807 FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370 2 4 4 170 X 21497272 21497350 TTCTTTGCATTATGCGTCC 58 21497120 21497138 GAGAGTTGCACACTTTCAC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14476 FBgn0027588 FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058 3 5 5 96 X 21473853 21474022 AATCTATGGTCATGGAGCG 59 21473775 21473793 TACAACATTGGTCTCCGAC 59 NA Drosophila melanogaster 50 sw FBgn0003654 FBtr0089400,FBtr0089403,FBtr0089409,FBtr0089408 1 4 13 153 X 20101663 20103201 TGAATTCACAGGAGACGAC 59 20101528 20101548 TTCAGTCTCCTTCTTGATCTC 58 NA Drosophila melanogaster 50 CoRest FBgn0053525 FBtr0091480,FBtr0091482,FBtr0091481 2 3 5 172 X 19418033 19418051 AATCCATAGCCAGTTTGGT 58 19418187 19419220 GGCGATTATCTTGTCATCG 58 NA Drosophila melanogaster 50 gfA FBgn0086778 FBtr0074679,FBtr0074680 2 2 3 103 X 19235952 19235970 TTTCAATCTGATTGTGCCG 58 19234611 19235885 GAATTGTAACTCCAAGCGA 57 NA Drosophila melanogaster 50 CG7280 FBgn0030966 FBtr0074655 3 1 1 60 X 18740986 18741004 CAGAACGACTATAAGGGCT 58 18740944 18740962 ATTTGCTGAAGTCTACCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6769 FBgn0030878 FBtr0074493 1 1 1 81 X 17756221 17756314 TTATCCGGACAATAATGAGGG 59 17756357 17756375 CACCAGCTGATACTCATCG 59 NA Drosophila melanogaster 50 CG8316 FBgn0030852 FBtr0074485 3 1 1 214 X 17525159 17525230 CGAATTGAAGGAAGAGTTGC 59 17524964 17524985 CCAGCTTCTTAGTAGTGATCTC 59 NA DesignRelaxed Drosophila melanogaster 50 l(1)G0222 FBgn0028343 FBtr0074490,FBtr0074489,FBtr0074488 3 3 3 114 X 17468998 17469093 AGCCCAAGGAAATCATCTG 59 17468902 17468922 TTTGACTGGGATCTTAGTACG 59 NA Drosophila melanogaster 50 baz FBgn0000163 FBtr0111000 3 1 2 94 X 17086985 17087004 TCAGAACGACATCTTCAACC 59 17087061 17087356 AATCGCCTCCACTAATCTG 59 NA Drosophila melanogaster 50 CG9906 FBgn0030755 FBtr0074299 1 1 1 60 X 16419150 16419168 GGAGGATGTGCAGATAGAG 58 16419108 16419128 ACTCTTGTAGGCAAACTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hang FBgn0026575 FBtr0074277,FBtr0074276 1 2 2 80 X 16328105 16328126 GTTTGACTCGAACGATTATTCC 59 16328164 16328307 TTATAGCGATGAACCCATAGAC 59 NA Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 3 7 7 85 X 16270054 16270134 GAGAACGAGGTGAAATGGA 59 16270183 16270201 CTGTAGGTGGGTAAGTCCT 59 NA Drosophila melanogaster 50 CG8924 FBgn0030710 FBtr0074131,FBtr0074130 2 2 2 68 X 15837293 15837311 TGAATGTCCACCTATCCCT 59 15837402 15837420 AATCCAAGTATTGCTGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 2 9 9 111 X 15788791 15788877 GAGTTACCGAATATGGCGA 59 15788952 15788970 TTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 CG9240 FBgn0030669 FBtr0074060 2 1 1 60 X 15594658 15594676 TGATCAGGTGCTAATCCAG 58 15594616 15594637 ATCCGAATTACCACTAAACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0168 FBgn0027287 FBtr0074042,FBtr0074043 3 2 2 205 X 15403947 15403966 TAAGGTGGGACTCAATAAGC 59 15404195 15404213 ATGTCACTCCATCCATCTG 58 NA DesignNoJunction Drosophila melanogaster 50 Lsd-2 FBgn0030608 FBtr0110969 1 1 3 86 X 14966818 14966838 GGGAACTCAACAAGTTTATGG 59 14966646 14966664 TGTGTAGGACTGGATCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Fbxl4 FBgn0030555 FBtr0073923 1 1 1 101 X 14129765 14129783 ATAATCTAACCCACCTGCG 59 14129630 14129700 GCAGGCTCAACTCTATCAG 59 NA Drosophila melanogaster 50 CG32625 FBgn0052625 FBtr0073839 2 1 1 60 X 13650673 13650691 AAGAAATTTCCATCGGACG 58 13650631 13650650 TAGGGTACATATGGGTTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mus101 FBgn0002878 FBtr0073817 2 1 1 60 X 13618514 13618535 GGAATGACTATTGTCGTATCCA 59 13618554 13618574 CTGTCGCATTAATAAAGTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1640 FBgn0030478 FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769 2 6 6 83 X 13268114 13268132 ATTCAACCGTTAGACGTCC 59 13268315 13268334 TATGTTATCCAGTGTGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4407 FBgn0030431 FBtr0073696,FBtr0073695 1 2 2 220 X 12796462 12796480 CAGTTGGTTCAGTACGAGG 59 12795796 12795814 TTCAAGTGGATGTAGTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2577 FBgn0030384 FBtr0073643 1 1 1 60 X 12268185 12268204 TGAAGTTCCACAATACTCAG 57 12268226 12268245 TGTTTAGGTGGAAATACACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34144 FBgn0083980 FBtr0110988 1 1 1 209 X 11192010 11192028 ATTCCATTGTTGGAACGAC 58 11191351 11191369 ATAGTCGTATCGATCCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 2 8 9 95 X 10692568 10692661 CGAATAAGGGTGAAATTTGC 57 10692492 10692510 GCATGATCCGTTTAATGGT 58 NA Drosophila melanogaster 50 Imp FBgn0030235 FBtr0110967 1 1 9 88 X 10692588 10692659 AATAAGGGTGAACTCTCCC 58 10692518 10692536 GACTTGCCAATGATTCGTC 59 NA Drosophila melanogaster 50 ras FBgn0003204 FBtr0071494,FBtr0071495 1 2 3 100 X 10639925 10639943 CAGACAAAGAGTACCACCG 59 10640006 10640117 AGAAAGTCGTTGTAGGTGAG 59 NA Drosophila melanogaster 50 CG9817 FBgn0030219 FBtr0071509 2 1 1 83 X 10499358 10499376 GCATAATGCCACAGAACAG 59 10499195 10499214 CGTACTTGGAGTACATCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Sp1 FBgn0020378 FBtr0071381,FBtr0112894,FBtr0071380 1 3 3 60 X 9648300 9648318 GAACATCCATTCGTGTCAC 58 9648342 9648360 CAGATGTGACGTCTTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0232 FBgn0028341 FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407 1 6 6 83 X 9524045 9524065 CCGTCGGATTATATTAATGCG 59 9523917 9524001 CTTTGGTAATGGACCTTGAG 58 NA Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274 2 10 10 164 X 8768354 8768372 GGATGAGAACGAGAACGAG 59 8768131 8768227 TCTTGTTTCAGAGCCTTGAG 59 NA Drosophila melanogaster 50 RpS6 FBgn0004922 FBtr0071137,FBtr0071135 2 2 3 269 X 7794950 7794969 CTTCTACGAGAAGCGTATGG 59 7794187 7794205 TTCTTCAAGACGACCAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG34337 FBgn0085366 FBtr0112539 3 1 1 64 X 7311451 7311469 CATGAGTGGAGCTACTACC 58 7311567 7311585 CATGAAGATCTTCAGGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9650 FBgn0029939 FBtr0112959,FBtr0112957 2 2 6 122 X 7126488 7126507 TAAGTTCATCCAGCACAAGG 59 7126591 7126955 ATTGTCGTTCTAAGGCTGAG 59 NA Drosophila melanogaster 50 CG12796 FBgn0029909 FBtr0070973 3 1 1 60 X 6726261 6726280 TTGACTCTGATCTCGATTGC 59 6726220 6726239 TATAGTGCAGAGCATAGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 3 8 8 60 X 6579593 6579674 GCCTTCAATGTGACTTCTC 58 6579697 6579716 GTGGATAACTGTCCACAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG16721 FBgn0029820 FBtr0070821 1 1 1 82 X 5775889 5775972 AGTTCCATGGAAATGTTGGT 59 5776017 5776035 AATGGTCTCATCATCGCTG 59 NA Nonspecific Drosophila melanogaster 50 cib FBgn0026084 FBtr0070641,FBtr0070639 3 2 3 200 X 4004033 4004192 CGATAAGGAAGCCATCGAG 59 4004356 4004374 TCTCAGATCTCGGATCTCG 59 NA InUTR Drosophila melanogaster 50 CG2938 FBgn0029685 FBtr0070627 1 1 1 115 X 3829209 3829307 CAAGTACTCCCTCACTGAC 59 3829112 3829130 CAAATCGTTCGTAGAGCAG 58 NA Drosophila melanogaster 50 ec FBgn0000542 FBtr0112801 2 1 3 77 X 3715030 3715048 TCTCAATTGTGCCGTACAG 59 3735397 3735415 CATACGTGCTGATTTAGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32793 FBgn0052793 FBtr0070550 1 1 1 60 X 2825786 2825806 CTCACTTATGGACATCTTCCA 59 2825828 2825846 AGATGATGAACCGGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3526 FBgn0040355 FBtr0070546,FBtr0113325 2 2 2 60 X 2787337 2787357 CAATAGGATGACCTTCTATCG 57 2787379 2787397 GGAGCAAAGATCATAGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL14 FBgn0040389 FBtr0070405 2 1 1 71 X 2238353 2238371 CCATGTCTACAACAAACGC 59 2238300 2238318 TTCATCTGTCCCTTGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or2a FBgn0023523 FBtr0070397 2 1 1 60 X 2140795 2140815 GTGCTCATCAATATCTACCAG 57 2140837 2140855 TAGCGCAGTTCTGTATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4199 FBgn0025628 FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070337,FBtr0070333,FBtr0070335 2 6 6 60 X 1961216 1961235 TAAATCGTAACGGATCCGTG 59 1961175 1961193 TACACATCGGGTACATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Roc1a FBgn0025638 FBtr0070122 2 1 1 106 X 541532 541550 GATAAGAAGCGCTTTGAGG 58 541769 541787 CACAAGTCCATGATGTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 mod(r) FBgn0016038 FBtr0089725,FBtr0089726 3 2 4 111 X 516383 516478 CATATCAGGGAGCTTCTTCAG 59 516551 516569 ACGTGTTGAGGAAAGTCTG 59 NA Drosophila melanogaster 50 CG13365 FBgn0029529 FBtr0070160 2 1 1 112 X 514982 515000 AGTACTACGGCTACAAGAC 58 514888 514906 GTGGAATCCAGAGAACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40571 FBgn0085746 FBtr0114196 1 1 1 69 U 8365652 8365670 TAGCTGTTCTACGACAGAG 58 8365703 8365721 AACAATATGAGAGGTCGGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40583 FBgn0085498 FBtr0113908 3 1 1 60 U 4408824 4408845 TGGGATGTTTATATTCCTACGG 59 4408785 4408805 CAATTCCTCCATTATGACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41527 FBgn0085670 FBtr0114117 2 1 1 61 U 3398341 3398360 AGGAAACTCTGAAAGAAGTC 57 3398383 3398402 CCCATTTAGCCATAACATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41492 FBgn0085653 FBtr0114097 2 1 1 114 U 1628652 1632491 GGATGAAGAATACGAATTCCC 58 1632567 1632585 GATAAGCTGTTGCATGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arf102F FBgn0013749 FBtr0089192 3 1 1 134 4 1145399 1145417 GGAGGATGAACTTAGGGAC 58 1145515 1145589 GACTGAATAAACCAGTGGC 58 NA Drosophila melanogaster 50 CG2118 FBgn0039877 FBtr0085855,FBtr0085856 2 2 2 94 3R 27617580 27617599 GATCAGGATCCATTTGTTGC 59 27617450 27617526 ACAGAATAGACCTTCTCATTGG 59 NA Drosophila melanogaster 50 ttk FBgn0003870 FBtr0085828,FBtr0085826,FBtr0085827,FBtr0085825,FBtr0085830,FBtr0085829 2 6 6 127 3R 27553858 27553876 ACATGATGAACGACTCCTC 59 27553964 27554122 GCGACTTTCATTTAGATCATCC 59 NA Drosophila melanogaster 50 pasha FBgn0039861 FBtr0085820 1 1 1 115 3R 27446120 27446138 TAACGGGCAACAATAAGGA 58 27446273 27446291 CTTGTTGCAGAATTCGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15536 FBgn0039766 FBtr0085628 1 1 1 60 3R 26250425 26250444 AGGGCGATATAGAAATCTGG 58 26250384 26250403 ATAGTTAGTAGGTCACCCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arp5 FBgn0039745 FBtr0085564,FBtr0085563 1 2 2 87 3R 25883386 25883404 TTTCCTGCTTCCAGAACAG 59 25883455 25883473 TACTTCTGGAAACAGTCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL32 FBgn0002626 FBtr0114556,FBtr0085592,FBtr0085593,FBtr0085594,FBtr0114555 3 5 5 61 3R 25871414 25871432 TCGGATCGATATGCTAAGC 59 25871309 25871327 ACTCTGTTGTCGATACCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 janA FBgn0001280 FBtr0085595,FBtr0085597,FBtr0085596 1 3 3 84 3R 25864787 25864805 GAAGGTCTACGGATACTCG 58 25864615 25864633 GTAGTCCGGGTATTTGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Trc8 FBgn0039668 FBtr0085430,FBtr0085432,FBtr0085429 2 3 4 97 3R 25327494 25327512 TGTCCAACTTTGGACTGTC 59 25327201 25327434 TTGGATTAGTCTGATGGTCC 58 NA Drosophila melanogaster 50 CG1458 FBgn0062442 FBtr0085405 2 1 1 124 3R 25048300 25048318 GAGGATATTGCGGAGAAGG 59 25048130 25048148 TTGATGACAATTGGTCCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 2 7 8 82 3R 24639657 24639675 TACTGCTACGGATATTGGC 58 24639721 24640880 CGCTCAAACACCTTATAGC 58 NA Drosophila melanogaster 50 spz FBgn0003495 FBtr0085144,FBtr0085137,FBtr0085138,FBtr0085145,FBtr0085140,FBtr0085143,FBtr0085139 2 7 12 134 3R 22892191 22892337 ATCGGATACCTTTGTCTTCC 59 22892076 22892095 AAGTTTCTAAGGTGTTGGCT 59 NA Drosophila melanogaster 50 CG14253 FBgn0039467 FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074 1 5 5 81 3R 22809875 22809893 GTATGCCTATGGAAGGCAG 59 22809935 22810014 CGGTAACTTAAAGATTTGGCTC 59 NA Drosophila melanogaster 50 CG14253 FBgn0039467 FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074 1 5 5 81 3R 22809875 22809893 GTATGCCTATGGAAGGCAG 59 22809935 22810014 CGGTAACTTAAAGATTTGGCTC 59 NA Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100338,FBtr0100334,FBtr0085092 3 3 9 134 3R 22699712 22699802 AACAGCTACCCATATACGG 58 22699596 22699614 ATATTTGCTGTTGGCACTG 58 NA Nonspecific Drosophila melanogaster 50 scrib FBgn0026178 FBtr0100180,FBtr0085021,FBtr0085018,FBtr0111033,FBtr0085019 1 5 7 88 3R 22406737 22415640 AACTACAGTCAACACCTGC 59 22415691 22415710 TTTAGGCACTTTAGTCGGAG 59 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625 2 8 17 92 3R 20521093 20521111 GGACATTAAGGACGAGACG 59 20521837 20528752 GTGATATCACCTAAGTCATCGA 59 NA Drosophila melanogaster 50 CG13614 FBgn0039194 FBtr0084614,FBtr0084615 3 2 2 109 3R 20196249 20196328 GTGTTTACACTACCAACCG 58 20196400 20196419 AAGTTTAGCTTACACGAGTC 57 NA Drosophila melanogaster 50 Pros26.4 FBgn0015282 FBtr0084520 1 1 1 60 3R 19756092 19756111 CGCTACGATTCAAATTCTGG 59 19756051 19756072 TCAGTAACTCCAACATAGTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4393 FBgn0039075 FBtr0084430 2 1 1 81 3R 19204907 19204926 TGCAGGATTACTTCATCTGG 59 19204779 19204865 CTCCTCAAAGACATTGTTCAC 59 NA Drosophila melanogaster 50 CG4467 FBgn0039064 FBtr0084390,FBtr0110801 1 2 2 80 3R 19057612 19057630 CTTTCCAGTCACCTATGTG 57 19057481 19057569 ACATTGAAGGTTACATCCAC 57 NA Drosophila melanogaster 50 unk FBgn0004395 FBtr0084403,FBtr0084402 2 2 2 143 3R 18981726 18981807 ATACAAGTACAGGTCCACTC 58 18981602 18981620 GTCGACTTGTAGATCTCCG 59 NA Drosophila melanogaster 50 CG17141 FBgn0039020 FBtr0084322 1 1 1 60 3R 18572546 18572565 TTAAGGATGATGAAATGGGC 57 18572505 18572523 ACAATATGATCGGGAAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-50 FBgn0024832 FBtr0084252,FBtr0084253 1 2 2 60 3R 18288987 18289008 GTAATGAAGTCGTATTTGTCGG 59 18289085 18289103 CGATCTTGTCGTTAATCCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG31353 FBgn0051353 FBtr0084191 3 1 1 76 3R 17804587 17804605 CACTATTTGTTGGCTAGGC 58 17804529 17804547 CAGCTAAAGTAGAGCCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 glec FBgn0015229 FBtr0084157 2 1 1 60 3R 17681506 17681524 GACTCGAATATCGATCAGC 57 17681464 17681484 CCTTAACGTATAATCTCTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CheB93b FBgn0051438 FBtr0084090 3 1 1 129 3R 17235337 17235415 ATTACAACTCCGGGAACAG 59 17235508 17235526 CACCAGATTTGTCGAATGC 59 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 3 22 22 87 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202451 17202547 TTGTTCAGGAATACGATAGC 57 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084077 3 1 22 83 3R 17200835 17200853 AACAGTCCCAGAACTACAG 58 17177597 17200788 AATGTGAGGTACCTTGAGC 59 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 2 22 22 85 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202453 17202548 GTTCAGGAATACGATAGCG 57 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 3 22 22 84 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202454 17202549 TTCAGGAATACGATAGCGT 58 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0110937,FBtr0112915 3 12 12 137 3R 17037304 17037479 GATGTGATTAATCTCGCCG 58 17037580 17037598 TTCCATGATCGTGTAGAGC 59 NA Drosophila melanogaster 50 slmb FBgn0023423 FBtr0084032 3 1 1 84 3R 16946807 16946826 ATCAAGGTTTGGGATTTGGT 59 16946682 16946760 CAGTATGTTCCACAAGGGT 59 NA Drosophila melanogaster 50 Atpalpha FBgn0002921 FBtr0089515,FBtr0089514,FBtr0089509,FBtr0089512 3 4 8 91 3R 16786471 16786489 TCTTAGAACGAGGGAAACC 58 16786544 16789461 CATCTTGCGTCTTGATGTG 59 NA InUTR Drosophila melanogaster 50 CG7432 FBgn0038727 FBtr0083785 2 1 1 82 3R 15496151 15496169 GATATGATTCCCACTGGGT 58 15496213 15496294 AGTATAGACACCTGGATATCC 57 NA Drosophila melanogaster 50 Dl FBgn0000463 FBtr0083740,FBtr0083739 1 2 2 206 3R 15134476 15137548 CTGTCACATACCCAAATGC 58 15132171 15132189 TAGTTCAGATCCTGGTTGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG7709 FBgn0038642 FBtr0083687 2 1 1 165 3R 14518347 14518365 TGGTGGCTTTGTCTTTAGG 59 14516620 14516638 GTTGATGAGCTTCGAATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14327 FBgn0038526 FBtr0083465 2 1 1 93 3R 13440411 13440429 GATACGGTGGAGGATATGG 58 13440485 13440504 TAACTGGATCCTTCACTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cher FBgn0014141 FBtr0089473,FBtr0089472,FBtr0089474,FBtr0089471 2 4 4 117 3R 12920031 12920106 AAGGCTGACATCAACTACC 59 12919932 12919951 ATCCCTTGATGTGCTTATCG 59 NA Drosophila melanogaster 50 CG31217 FBgn0051217 FBtr0083353 1 1 1 130 3R 12479547 12479632 AATGCGTGAAATACTGCAG 58 12479435 12479453 GACAAACTTCACTTCGGTG 58 NA Drosophila melanogaster 50 Fas1 FBgn0000634 FBtr0083333 2 1 4 111 3R 12460096 12461277 TCGTTCAAGGAGAATGCTG 59 12461351 12461370 AAATGGTCACTTCTGTCAGG 59 NA Drosophila melanogaster 50 CG17931 FBgn0038421 FBtr0083322 1 1 2 144 3R 12184507 12185226 AATTTGTCATGGTAAGCGG 58 12184310 12184328 TTCTCCCGCATTAACTCAG 59 NA Drosophila melanogaster 50 CG31287 FBgn0051287 FBtr0083256 3 1 1 137 3R 12029545 12029563 CCACATATCAGGATTTGCT 57 12029663 12029739 GCTTGGTTACCAAATTTACG 57 NA Drosophila melanogaster 50 pnr FBgn0003117 FBtr0083220,FBtr0083221 3 2 2 130 3R 11865150 11865168 CATTCAGACCAGGAAACGA 59 11865262 11865348 AGGGTTTGAGATCATGCTC 59 NA Drosophila melanogaster 50 Atx2 FBgn0041188 FBtr0083101,FBtr0083099,FBtr0083100 3 3 3 151 3R 11239224 11239300 ATTATGCATGGGTCTTCTCAG 59 11239413 11239431 TAGTTCAGTGACGAGTTGC 59 NA Drosophila melanogaster 50 CG6654 FBgn0038301 FBtr0083139 1 1 1 101 3R 11038057 11038075 ATACGCTGTGATTCCAAGG 59 11037919 11037995 CATGGTGAATACTTTCTGACAG 59 NA Drosophila melanogaster 50 CG6904 FBgn0038293 FBtr0083037,FBtr0083035,FBtr0083036 1 3 3 95 3R 10968575 10968688 TGGGCATTTACTACAGACAG 59 10968499 10968520 AGTTGTTCTTCGATCCATAGAG 59 NA Drosophila melanogaster 50 CG7530 FBgn0038256 FBtr0083020,FBtr0083021,FBtr0083019 1 3 3 103 3R 10551833 10551851 TTCAACCCGTACATTCGTC 59 10551639 10551767 CTCCAGATGTTGATCGTCTC 59 NA Drosophila melanogaster 50 CG14851 FBgn0038240 FBtr0082956 1 1 1 96 3R 10388099 10388117 ATCATCTTCGCCATTCTCG 59 10388177 10388195 AGTTGATGCATCCAGTGAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Abi FBgn0020510 FBtr0112896,FBtr0082910 3 2 2 101 3R 9946188 9946430 CGCAATATCAACAGGAATCAC 59 9946107 9946125 GTCTTGATGCTCATCCTCC 59 NA Drosophila melanogaster 50 rdx FBgn0086364 FBtr0082872,FBtr0082871,FBtr0082874,FBtr0100852,FBtr0100361 2 5 5 91 3R 9796061 9796079 AAATCAGAAGTCAGAGCCA 58 9795915 9796006 AAACGATAAGCTCTTTGGG 57 NA Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082803,FBtr0082807 1 2 8 149 3R 9488074 9488092 GACGATCGATATGGTGGTC 59 9488770 9489191 AAAGCACATCAAACTCTGC 58 NA Drosophila melanogaster 50 CG34308 FBgn0085337 FBtr0112504 3 1 1 61 3R 8915072 8915090 TAAGGACAAACGAAACCCA 59 8915115 8915133 TCCAGGAATCCTCTTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10013 FBgn0038012 FBtr0082567 3 1 1 60 3R 8150289 8150311 CTGATATAGACTTACCCATGGAG 59 8150331 8150349 ACATTCATGTCCACATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17404 FBgn0038001 FBtr0082622 2 1 1 61 3R 8050297 8050315 ATCAGGAACTGGTTACCAG 58 8050254 8050272 ATTTAACTTCAGCGGAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4830 FBgn0037996 FBtr0082625 1 1 1 90 3R 8035668 8035686 ACCTACATTATGCCCACAG 59 8035484 8035616 GCTTAAGAGTAGATTCCTCGA 58 NA Drosophila melanogaster 50 CG18347 FBgn0037969 FBtr0082484 3 1 1 114 3R 7796689 7796766 TGTATCACTAAGACACTGAAGC 59 7796839 7796859 CCAGATAGTAGACCGTTTGAG 59 NA Drosophila melanogaster 50 Fdh FBgn0011768 FBtr0082290 1 1 1 67 3R 6697135 6697153 AAGAAGTTCGGATTCACCG 59 6697086 6697104 TAGTTCTGGATCGAACCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cap-H2 FBgn0037831 FBtr0082271 2 1 4 156 3R 6589658 6589836 ATTCAAATGCATACAGCAGG 58 6589952 6589973 TGATAAGATCAGCATCCATCTC 59 NA Drosophila melanogaster 50 CG14683 FBgn0037822 FBtr0100412,FBtr0082267 1 2 2 60 3R 6524092 6524111 TGTTGGCTAATGTTGAAGAG 58 6524133 6524152 TTCTCTTCACCATACATCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34304 FBgn0085333 FBtr0112500 1 1 1 170 3R 6484506 6484524 AAACATGCTGCCAAATGTC 59 6484842 6484860 TTGGGTGACATACACATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12817 FBgn0037798 FBtr0082243,FBtr0110952 1 2 3 96 3R 6049940 6049960 GCCATGCATCATAACTATGAC 59 6049756 6049885 CAATTGCCTCTATAAAGTGCTC 59 NA Drosophila melanogaster 50 CG12814 FBgn0037796 FBtr0082182,FBtr0110786 2 2 2 80 3R 5998356 5998374 TCTTCCTGATCATGTTGCT 58 5998141 5998314 TCTCGATGATCTCTGTATTGG 58 NA Drosophila melanogaster 50 Fmr1 FBgn0028734 FBtr0082200,FBtr0082198,FBtr0082197,FBtr0082199 3 4 5 95 3R 5930072 5930090 GAATGGCAGGGACTATCAG 59 5929454 5930013 GATGAGTTACTGTCCGCTC 59 NA Drosophila melanogaster 50 CG8534 FBgn0037761 FBtr0082143 3 1 1 60 3R 5639419 5639438 TACTGGCATGTTCATTTCCA 59 5639459 5639479 GTTGTGAATGTAGAAGTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32937 FBgn0052937 FBtr0082089 3 1 1 60 3R 5552475 5552496 TGCTGATAATCCTCTAGATTCC 58 5552436 5552454 GGGAAGACAACCAATTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33654 FBgn0053654 FBtr0091633 3 1 1 76 3R 5408714 5408734 CGGAGCTATAAGTACTTAACG 57 5408566 5408584 AACATGAAGGGTCTGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG16733 FBgn0037665 FBtr0081974 1 1 1 60 3R 5077595 5077616 GCAGCTAATTTATCGTGAACTC 59 5077637 5077655 CGGAAAGACTGCATTAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ctr1B FBgn0062412 FBtr0081835 2 1 1 97 3R 4144501 4144519 GATGCTGATCTTCATGACC 57 4144580 4144598 GATTCTTCTTGTTCCAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ccp84Ac FBgn0004781 FBtr0081693 1 1 1 133 3R 2521633 2521651 AAGTACAACTTCGCCTACG 59 2521518 2521536 TTTACAGTACGACGGAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rm62 FBgn0003261 FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653 2 6 6 155 3R 1829622 1829746 GAGGAGAAATTGAAGACCCT 59 1829486 1829504 CTTGTCACCGTGAATAGCT 59 NA Drosophila melanogaster 50 exba FBgn0037346 FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745 3 7 7 85 3R 1423978 1423999 GGTTCTATTATTCGTAAAGGGC 58 1423648 1423932 CAGAACCGTTGACTAACCA 59 NA Drosophila melanogaster 50 CG2663 FBgn0037323 FBtr0078795,FBtr0078796 2 2 2 257 3R 1227160 1227241 TACTGGACTATGTGCACTG 58 1226921 1226939 TCAGGAACTTCTTCACCAC 59 NA DesignRelaxed Drosophila melanogaster 50 Cdep FBgn0051536 FBtr0110958 3 1 2 81 3R 749541 751276 ACTTCCAAAGGTCTCAGTC 58 751319 751339 CTGGAATTCACATACGTATGC 59 NA Drosophila melanogaster 50 CG34425 FBgn0085454 FBtr0112726 2 1 1 60 3R 331575 331593 AATTCTGGAGAACCAACGG 59 331533 331552 CTCCAGCCAATAGTTATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32205 FBgn0052205 FBtr0075000 1 1 1 163 3L 19416416 19416489 TGTTTAAATCCGACGTCCT 58 19416271 19416289 TAACCTGATAACTGGCAGC 59 NA Drosophila melanogaster 50 mRpS5 FBgn0044510 FBtr0111146,FBtr0111144,FBtr0111147,FBtr0111145 3 4 4 61 3L 24530644 24530665 GCTTGTTATCTTCACATGAACC 59 24530685 24530705 GAAGCTGGTATTACGTAAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11109 FBgn0037200 FBtr0078552,FBtr0078553 2 2 2 61 3L 22866469 22866488 AACAGGTTAAGGTCTTGTCC 59 22866512 22866530 CACTGCCTGTTCAAATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33771 FBgn0053771 FBtr0091772 2 1 1 60 3L 22642788 22642808 GAACTTTCAGTCCATGTTCAG 59 22642830 22642848 TTTGACACTGGATGTTACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33290 FBgn0053290 FBtr0078370 2 1 1 60 3L 21535903 21535922 CTGGGTGAATAGATTGAAGC 58 21535944 21535963 ATAGTTCACAAGCCAGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3634 FBgn0037026 FBtr0078272 3 1 1 61 3L 20801962 20801980 TTGAGTGGTGGTATTTCCG 59 20801854 20801872 GTGGTTGATAGAGACTTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7646 FBgn0036926 FBtr0074901 3 1 2 198 3L 19986372 19986393 GCCTCAGTAGGTAAATAATGCT 59 19988600 19988747 CTAGCATGTCATAAATTGCCTG 59 NA InUTR Drosophila melanogaster 50 CG8533 FBgn0036907 FBtr0074877,FBtr0114601,FBtr0074878,FBtr0074876 1 4 4 169 3L 19794992 19795010 CATCTTCGACTACAAGCCT 59 19795205 19795274 ATGGTTCAGATGTGTCCAC 59 NA Drosophila melanogaster 50 nes FBgn0026630 FBtr0075021,FBtr0075020,FBtr0075019 1 3 3 72 3L 19251666 19251684 ACATGACATTCCTCATGGA 58 19251439 19251457 ACCACTTTGGTGTAGAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 l(3)neo26 FBgn0036815 FBtr0075057,FBtr0075056 3 2 2 70 3L 18814990 18815008 TTCAGCCGATTCCAAAGAG 59 18815039 18815060 GGTTCCCATCAAGTAAATATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6893 FBgn0036807 FBtr0114373 2 1 1 63 3L 18687655 18687673 CTTCAAATCTCCAACAGGC 58 18687877 18687898 GCACTTAATCCATCGTATAGTG 58 NA DesignNoJunction Drosophila melanogaster 50 Nedd4 FBgn0036736 FBtr0075177,FBtr0075178 2 2 4 86 3L 17535992 17536011 TTGATGTGGATCATCGTCAG 59 17536060 17536620 GATCGGTGTCTTCATTCGA 59 NA Drosophila melanogaster 50 CG13733 FBgn0036729 FBtr0075225 3 1 1 60 3L 17471355 17471373 TATCATGGCAAGTCTCCAG 58 17471313 17471332 GTTGTGAATCTTCTGATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 blot FBgn0027660 FBtr0075235,FBtr0075233,FBtr0075234,FBtr0075232 3 4 4 131 3L 17391426 17391508 GTTGTAATGCTGTGCACAC 59 17391313 17391332 GAAGTAGTGACGACTGAAGG 59 NA Drosophila melanogaster 50 CG6512 FBgn0036702 FBtr0075251,FBtr0075252 3 2 2 82 3L 17233768 17233786 CAATGAGATTGGTGTGGGT 59 17233650 17233669 TCAGGAAGTTAACGAACTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Fit2 FBgn0036688 FBtr0075275 3 1 1 60 3L 17019337 17019355 AAGTGGACAGCATACTCTC 58 17019379 17019397 TTTACATGAACTCCGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9951 FBgn0036671 FBtr0075337 1 1 1 60 3L 16857592 16857612 GCAGGATACATGAATTCATCG 59 16857631 16857652 AGAACTTTGTAGATATCCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Abl FBgn0000017 FBtr0112790 1 1 2 166 3L 16622298 16624486 ATGAACTTAGAAGCCCTGC 59 16622150 16622168 GTAGTCGAACTGTGACCAC 59 NA Drosophila melanogaster 50 CG4729 FBgn0036623 FBtr0075417,FBtr0075419,FBtr0075418 2 3 4 82 3L 16377075 16377094 TATCAAGCCCATAGACAAGC 59 16376952 16377031 ACACGAAGATAAGTTGGGAG 59 NA Drosophila melanogaster 50 CG32160 FBgn0052160 FBtr0075367 2 1 1 60 3L 16303366 16303384 AACTGTACCTTCAATGGTG 57 16303408 16303426 TGACAAATCACCATAACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf4 FBgn0010280 FBtr0075449,FBtr0075448 1 2 5 93 3L 16109259 16109277 CCAGCAATAACAGCAACAC 59 16109334 16110655 TTGGTCATAGAAGCTGCAG 59 NA Drosophila melanogaster 50 CG5284 FBgn0036566 FBtr0075444,FBtr0075445 1 2 2 81 3L 16087581 16087599 TATCCGTTCCTAGACAGCA 59 16087644 16087720 AAGTTTCATTCCGCTTTGG 58 NA Drosophila melanogaster 50 CG5626 FBgn0036266 FBtr0076016 2 1 1 111 3L 12198561 12198638 CCTACTAGAAGTTGGACGT 57 12198468 12198486 GTAGTTGGTGTACCTTTCG 57 NA Drosophila melanogaster 50 obst-G FBgn0036228 FBtr0076066 1 1 1 60 3L 11946096 11946114 CGATGATCCTGACAATGTG 58 11946054 11946075 CGTGTCGTCAACAATATTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32065 FBgn0052065 FBtr0076284 3 1 1 300 3L 10438608 10438626 GAGCTGAGAAGTGAAACCA 59 10440552 10440573 AGTCTGAATCTAAATCGGAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32056 FBgn0052056 FBtr0076303,FBtr0076301,FBtr0076302 3 3 3 86 3L 10214550 10214568 TTCTTCGGCATCAATTTCC 58 10214221 10214501 GAACATGGCATCTATGAGGA 59 NA Drosophila melanogaster 50 alphaTub67C FBgn0004236 FBtr0076393 2 1 1 61 3L 9675930 9675948 AACATGATGGTCAAGTGTG 57 9675973 9675991 CTGTAAAGCATGCAACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pall FBgn0036005 FBtr0076471 2 1 1 89 3L 9480579 9480597 AGATCATTATGGCCCATGC 59 9480439 9480527 GGGATAGAATGTGGTTCCTG 59 NA Drosophila melanogaster 50 CG4022 FBgn0035986 FBtr0076486 3 1 1 67 3L 9402283 9402372 AATTAGTCAGAAACGCCGT 59 9402234 9402252 ATTCCAGACATCCTTCAGC 59 NA DesignRelaxed Drosophila melanogaster 50 Hsp67Bc FBgn0001229 FBtr0076497 1 1 1 60 3L 9364906 9364924 GCATCATACCCATTAAGCA 57 9364864 9364883 TTATGACCGTTTCCATTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp66E FBgn0035936 FBtr0076507,FBtr0076508,FBtr0076506 3 3 3 85 3L 8919887 8921127 GCATTGAGCAATTTACACAG 58 8921175 8921193 GCTCATGAAGAACATGACG 58 NA Drosophila melanogaster 50 CG13310 FBgn0035928 FBtr0076590 2 1 1 122 3L 8792240 8792258 GATTGGTTGCATTCGATCG 59 8792053 8792154 CGAACACTTGATTGCACTG 59 NA Drosophila melanogaster 50 CG5989 FBgn0017429 FBtr0076649 2 1 1 80 3L 8596066 8596084 GCTCATCGATGTCAAAGAC 58 8595943 8596022 ACTAGGTTTCTAACGTGCT 58 NA Drosophila melanogaster 50 CG32373 FBgn0052373 FBtr0076806,FBtr0076805 2 2 2 87 3L 7750857 7750940 CTGTAATGATATCGACGAGTG 58 7750988 7751007 ACAGGTGCATATGAATTCAC 58 NA Drosophila melanogaster 50 CG32373 FBgn0052373 FBtr0076806,FBtr0076805 3 2 2 88 3L 7750856 7750938 GCTGTAATGATATCGACGAG 58 7750988 7751007 ACAGGTGCATATGAATTCAC 58 NA Drosophila melanogaster 50 SMSr FBgn0052380 FBtr0076870,FBtr0076871 2 2 2 109 3L 7368206 7368288 AATAACAGGGCTCTCATGC 59 7368115 7368134 GTATCGTATTCATTGGGCAC 58 NA Drosophila melanogaster 50 CG8616 FBgn0035752 FBtr0076834 2 1 1 165 3L 7233026 7233044 AAACTTCACAGAACTCGTG 57 7233229 7233249 GCTCCAGTAGTTAATAATCGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG14829 FBgn0035751 FBtr0076893 3 1 1 63 3L 7230906 7230924 ATATCCCTGGGACAAATGG 58 7230861 7230879 CAAGCTCCTGATCTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18769 FBgn0042185 FBtr0076973,FBtr0076975,FBtr0076970,FBtr0076974,FBtr0076972,FBtr0076971 1 6 6 103 3L 6584090 6584167 TATTGCTCAGCTCTACGAG 58 6584234 6584252 GTGGTTCTAGTTCATAGCG 57 NA Drosophila melanogaster 50 CG18769 FBgn0042185 FBtr0076973,FBtr0076975,FBtr0076970,FBtr0076974,FBtr0076972,FBtr0076971 1 6 6 103 3L 6584090 6584167 TATTGCTCAGCTCTACGAG 58 6584234 6584252 GTGGTTCTAGTTCATAGCG 57 NA Drosophila melanogaster 50 Trn FBgn0024921 FBtr0077002,FBtr0077000,FBtr0077001 2 3 3 117 3L 6187881 6187899 GTCATCAGATGAGGACCAC 59 6187977 6188081 CAGCATGTACTCAATAATCTGC 59 NA Drosophila melanogaster 50 CG10274 FBgn0035690 FBtr0113149,FBtr0077018 1 2 2 60 3L 6173394 6173412 AACCACATTAAGATCGTGC 58 6173352 6173371 TCTTTCCACAGTATTGACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32415 FBgn0052415 FBtr0077111 2 1 1 60 3L 5797539 5797558 ACGGACGAAATCCTAATGAG 59 5797581 5797599 GAAGGACACAAGTTGACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13285 FBgn0035611 FBtr0077141 2 1 1 129 3L 5528360 5528545 CGGCCAAGTTGTTAAATCTC 59 5528250 5528268 GGATAGTATCCCGATGAGC 58 NA Drosophila melanogaster 50 CG32245 FBgn0052245 FBtr0073311 3 1 3 81 3L 4564538 4577926 TACGTAGACTTGATACACAAGC 59 4578775 4578793 CATGTTGATGCCTTATCGC 59 NA Drosophila melanogaster 50 CG11353 FBgn0035557 FBtr0073309,FBtr0073308 3 2 2 101 3L 4538172 4538263 CTATGTGAAATATCCCAAGGTG 58 4538324 4538343 AATTGGAACTTGATGCTCAG 58 NA Drosophila melanogaster 50 CG32240 FBgn0052240 FBtr0073336 2 1 1 172 3L 4381222 4381240 AAGAACTGAATCAGTGCGA 59 4381005 4381024 TGTGTTCTATAAAGGGTCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG14985 FBgn0035482 FBtr0073191 2 1 1 110 3L 4004264 4004282 GATCAAGGGTGACTTGGAG 59 4004527 4004548 CGCCCAATCTTAATTATGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 enc FBgn0004875 FBtr0073153 3 1 4 229 3L 3832329 3832348 GTATCACTATGAGCCCAGAG 59 3832540 3832616 CTGATTGATGAAAGACGCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG32264 FBgn0052264 FBtr0113431,FBtr0113430,FBtr0073188 1 3 5 97 3L 3718987 3722173 CAATAACTATTCGCTCAACAGG 59 3718911 3718929 TTTCGCGTATCACAAATGG 58 NA Drosophila melanogaster 50 CG12010 FBgn0035443 FBtr0073074,FBtr0073075 3 2 2 60 3L 3375553 3375571 TCAGGGATATGTGATAGCG 58 3375595 3375613 TAAGAGTTGCTGTTGAACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14968 FBgn0035431 FBtr0073087,FBtr0073089,FBtr0073088,FBtr0073086 2 4 5 70 3L 3300765 3300783 CAGTAGTACCACCGATCTG 58 3300038 3300731 TGTACTTCACCTTGAACGT 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 RpL28 FBgn0035422 FBtr0073097,FBtr0073095,FBtr0073096,FBtr0073098 1 4 4 87 3L 3221935 3221954 CAATTGGTTGATCATTCGCA 59 3221695 3221885 CAAGTTGTTTGGCTCTGTG 59 NA Nonspecific Drosophila melanogaster 50 rasp FBgn0024194 FBtr0073029 2 1 1 60 3L 3162532 3162551 GCTCTTAGTGTAAACCTGGA 59 3162574 3162592 AGCTGGCTATCAATGTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1244 FBgn0035357 FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933 2 6 6 90 3L 2640506 2640585 TCTGTGGAAGGATGTACCA 59 2640639 2640657 CACTTGTAGGACAGGTGAG 59 NA Drosophila melanogaster 50 CG1887 FBgn0035290 FBtr0113125,FBtr0072859,FBtr0113124 1 3 3 60 3L 1894438 1894613 ATACAACCGAAACTTGGAG 57 1894396 1894417 CTTTAAGATTCAGCTGTATCCG 58 NA DesignRelaxed Drosophila melanogaster 50 n-syb FBgn0013342 FBtr0072815,FBtr0072817,FBtr0072816,FBtr0072819 2 4 5 299 3L 1635310 1635328 GAGGAAATTCTGGCTTCAG 58 1632235 1632253 TCGAGAAACTTTCGTCCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12004 FBgn0035236 FBtr0072746,FBtr0113122,FBtr0072745 3 3 3 142 3L 1573250 1573268 TCATCTGCATCGAAATGCT 59 1573608 1573688 CATTGTTTCCTTAAGACTGCTG 59 NA Drosophila melanogaster 50 5SrRNA:CR33450 FBgn0053450 FBtr0086442 1 1 1 62 2R 15617904 15617922 AATACATCGGTTCTCGTCC 59 15617860 15617878 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 zip FBgn0005634 FBtr0072398,FBtr0072399 3 2 4 101 2R 20885211 20885809 GTGCTCATTAACTTCTCGG 58 20885128 20885149 CATCTTCAATCCATTGACTACC 58 NA Drosophila melanogaster 50 Ance-5 FBgn0035076 FBtr0072420 1 1 1 143 2R 20776461 20776479 ATGTCATGGAGATAGCCAC 58 20776276 20776354 TTCGACACAATTCATCTGC 58 NA Drosophila melanogaster 50 Cpr60D FBgn0050163 FBtr0072334 1 1 1 60 2R 20550674 20550692 CTTCTGAAGTCGGAGAACC 59 20550632 20550650 TGATCTCATGCTGGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16786 FBgn0034974 FBtr0072248,FBtr0072247 1 2 2 92 2R 19971025 19971043 AACTGTCTATGGCTTCCTG 58 19971096 19971184 GATTTAAGTTCAAAGGCTGGAG 59 NA Drosophila melanogaster 50 yki FBgn0034970 FBtr0072183,FBtr0072184 3 2 3 156 2R 19953829 19954696 AAAGCAGAATGAATCTGGG 57 19953608 19953627 ATACCATTCCAAATCGTCAG 57 NA Drosophila melanogaster 50 sei FBgn0003353 FBtr0072169,FBtr0072170 1 2 2 80 2R 19938358 19938376 GGTTCCTAATCGATCTCGT 58 19938419 19938498 TTAAGGTAGTTGTCTCGTCG 59 NA Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 1 8 8 80 2R 19817553 19817571 GGATATCATGGAGAAGCCC 59 19817427 19817509 CCAATAGCCATGTAACGGA 59 NA Drosophila melanogaster 50 Upf3 FBgn0034923 FBtr0072221 2 1 2 136 2R 19780930 19781005 GGAATAAAGATCGACCATCG 58 19780813 19780831 CTTCGAAGTCTTCTCCTCC 59 NA Drosophila melanogaster 50 CG4019 FBgn0034885 FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103 2 4 4 214 2R 19495764 19495782 TCGAGTTCGTAATCACCTC 58 19495488 19495506 GTAGATCCAGTTGCTCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9861 FBgn0034844 FBtr0072002 2 1 1 148 2R 19212392 19212412 TACTGCATTCGATACTTACCG 59 19212575 19212665 CTGTGGAATCCGTCTTCTC 59 NA Drosophila melanogaster 50 CG30259 FBgn0050259 FBtr0113365 3 1 2 60 2R 18591476 18591494 GATATGTACGCCAATCTGC 58 18591434 18591452 TCGTACCAACTATCCTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bonsai FBgn0026261 FBtr0071860 2 1 1 183 2R 18525696 18525714 GATGAGATGGTCAAGGAGG 59 18525918 18525938 AGTACTTGAGGAACTTCTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30281 FBgn0050281 FBtr0071760 1 1 1 80 2R 18002742 18002838 GCAGTCATGAGACAATTAACC 59 18002879 18002898 CCGGAACTTCAATAACATGG 58 NA Drosophila melanogaster 50 CG11073 FBgn0034693 FBtr0071797 1 1 1 60 2R 17981151 17981171 CCAACTATCATTACTGAAGCG 58 17981111 17981129 GATCCACAATACCCTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30386 FBgn0050386 FBtr0071598 1 1 1 64 2R 17187659 17187677 CACATCGGAGTTATGGGAC 59 17187705 17187723 AATGTTGATCACGAAACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bl FBgn0015907 FBtr0086221,FBtr0086220 3 2 4 91 2R 16483146 16483164 TTCGCATACTGATTCCGAG 59 16483312 16485064 AGTGGCTTTATACTGAGTCC 58 NA Drosophila melanogaster 50 hts FBgn0004873 FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086548 1 5 6 87 2R 15295689 15295707 TTCGATAACGTCACAGACG 59 15295552 15295639 TGTCGGTATATTCACCATGC 59 NA Drosophila melanogaster 50 CG5327 FBgn0034363 FBtr0086707 2 1 1 185 2R 14503766 14503784 AGAACTGCATCGAGAAGTG 59 14504012 14504030 AACTCTCAAACATGTGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4966 FBgn0034261 FBtr0086840,FBtr0086839 3 2 2 84 2R 13577311 13577388 TGATCTTGAGATCCAACGAC 59 13577435 13577453 ATCTGATGGGTAGGTTCCT 59 NA Drosophila melanogaster 50 RhoGAP54D FBgn0034249 FBtr0086900,FBtr0086901 3 2 2 100 2R 13477349 13477420 GGAGAAGAATCTCACCCAG 59 13477267 13477285 AATTCAGTGGTTTGTCGTG 58 NA Drosophila melanogaster 50 ProsMA5 FBgn0016697 FBtr0086910 3 1 2 81 2R 13300523 13300541 AGCAATTGGAATTTGCACG 59 13300644 13300662 AGTACTGGGTACCATTAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG12699 FBgn0046294 FBtr0086995 1 1 1 90 2R 13134398 13134416 AGAATCAGATGCAGAGGAC 58 13134326 13134344 TATATCCACACGGTTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS15 FBgn0034138 FBtr0087124,FBtr0087123 1 2 2 99 2R 12458179 12458197 CATGATCATCGTACCCGAG 59 12457857 12457875 GTAGTGACCGATCATCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Vha44 FBgn0020611 FBtr0087175,FBtr0087173,FBtr0087176,FBtr0087174 1 4 4 80 2R 12213561 12213649 CAGTGCTGATAACGTAGAC 57 12213499 12213518 ATGTTGACCTTGTAGAACAC 57 NA Drosophila melanogaster 50 Lis-1 FBgn0015754 FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240 2 6 6 64 2R 12070571 12070592 GCTCAAATGATCAGACAATACG 59 12070617 12070702 GCGTAATTCAACCTTGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 Aats-cys FBgn0027091 FBtr0087234 3 1 1 81 2R 12032151 12032172 GGAAGGATACTCTTGACTACTC 59 12032212 12032291 TTCAGGAAGAACTCATTGAGG 59 NA Drosophila melanogaster 50 Rho1 FBgn0014020 FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216 2 7 7 82 2R 11993293 11993373 CACAATTCGGGATCTAGCA 59 11993419 11993437 AGGCATTAATCTTCTCGGC 59 NA Drosophila melanogaster 50 CG8160 FBgn0034011 FBtr0087389 3 1 1 63 2R 11215172 11215190 AATCGGGCCAGTTATATGC 59 11215127 11215147 AATTCTCCCTGTACAAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp317a1 FBgn0033982 FBtr0087405 1 1 1 60 2R 10787458 10787476 GTATGACTGCCTGTACGAG 59 10787499 10787518 CATTAGGGTGCTATTGACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6220 FBgn0033865 FBtr0087650 2 1 1 60 2R 9580388 9580406 CAAGTACAATCGCTATGGC 58 9580346 9580364 ATTTATGCCGAACTCTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cnn FBgn0013765 FBtr0087703 1 1 5 155 2R 9337763 9337781 TAATTGAGACCGTGACCAG 58 9332635 9333062 AACTGGCATATGAGTTCTCC 59 NA Drosophila melanogaster 50 CG17048 FBgn0033828 FBtr0087721 3 1 1 62 2R 9241680 9241698 ACAGAATCCAGAGAAGCTG 58 9241636 9241654 CTGTACAGTGCTAAACAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33182 FBgn0053182 FBtr0087770 2 1 1 100 2R 9074555 9074574 GTTACAAGAATTGCAACGCA 59 9074416 9074492 CTCCTGCGTGATCTTACTG 59 NA Drosophila melanogaster 50 nemy FBgn0033765 FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875 1 6 6 192 2R 8558847 8559072 AAGCGGATGAGGAAATCTG 59 8558673 8558691 CTGTACGCTTATAGTCCCG 59 NA InUTR Drosophila melanogaster 50 CG33752 FBgn0053752 FBtr0091753 3 1 1 61 2R 8433236 8433256 AGTTTAGAGATCAACGGAGAG 58 8433278 8433297 TCCAATACTTCACACTTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13204 FBgn0033627 FBtr0088129,FBtr0088128 1 2 2 203 2R 7256174 7256192 TTTCCTAAAGCCCTTCCAG 59 7256417 7256435 TAGGTATTAACCGTGTGCG 59 NA DesignNoJunction Drosophila melanogaster 50 zetaTry FBgn0011556 FBtr0088164 3 1 1 61 2R 7227223 7227241 CACGAAGGGTATTACTCGG 59 7227180 7227199 GGATCCACAAATAGAATGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 1 26 26 80 2R 6421013 6421095 AGTCCCTACTTTGCTACCT 59 6420951 6420970 CTCTTGGTACTTGACATCCT 58 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 2 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421092 TAGTAAGGTAGCAAAGTAGGG 58 NA Drosophila melanogaster 50 Cyp49a1 FBgn0033524 FBtr0088311,FBtr0088313 3 2 3 82 2R 6343083 6343101 TCCTTATTCGGAAGTACCG 58 6342946 6343040 TGTATGTTCCTATTAGTGGAGC 59 NA Drosophila melanogaster 50 CG2269 FBgn0033484 FBtr0088407,FBtr0088408,FBtr0088409 2 3 3 115 2R 5982473 5982561 GCTATCTATGTGGTGCCTC 59 5982640 5982658 GATCATCAGGATGGAACGG 59 NA Drosophila melanogaster 50 sut4 FBgn0028560 FBtr0089675,FBtr0089674 1 2 2 60 2R 5973577 5973596 TGCCACTATCATTTCGATCC 59 5973536 5973556 CACCAATAGGAGTATCTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TER94 FBgn0024923 FBtr0112905,FBtr0088391,FBtr0112906,FBtr0088392 2 4 4 102 2R 5880410 5880494 GACAGAACTTCAGATTCCC 57 5880560 5880578 CTGTAAAGATCATCGTCGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG18446 FBgn0033458 FBtr0088376 3 1 1 60 2R 5759991 5760009 GTAACCAACATACTTCGCT 57 5760033 5760051 CTTGTGAGAATTCCTTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rep2 FBgn0028408 FBtr0112930,FBtr0088597 2 2 2 145 2R 5184910 5184928 TTGTTCTGGAGTGTGATGG 59 5185037 5185785 TATAGCTGATATGGCAGCC 58 NA Drosophila melanogaster 50 CG8026 FBgn0033391 FBtr0088611,FBtr0088610 3 2 2 110 2R 5076504 5076583 GTACTTCATGTTCTACAACACC 59 5076415 5076433 GTGAGAATTCCCGACTCAG 59 NA Drosophila melanogaster 50 ltd FBgn0002567 FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934 1 5 5 108 2R 5066192 5066210 GGATGAGTATGTGAGGGAG 58 5066041 5066123 GATGAGTATCTTATTCACGAGG 57 NA Drosophila melanogaster 50 Vang FBgn0015838 FBtr0088566 3 1 1 60 2R 4992180 4992198 TTTAACCCTTACCTGGAGC 58 4992222 4992240 ATATCTTGTTTCGCTGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8083 FBgn0025709 FBtr0088560,FBtr0088562 2 2 3 149 2R 4967667 4967743 TGGATCATAAGGAGTTGGA 57 4967856 4967874 GCAGCAGTACATAAATCGA 57 NA Drosophila melanogaster 50 CG14744 FBgn0033324 FBtr0113056 3 1 1 114 2R 4595305 4595323 ACTTCAGCATCTCCATGTG 59 4595140 4595230 GTGAGGATAATAAACAGGTGGT 59 NA Drosophila melanogaster 50 coilin FBgn0033265 FBtr0100668,FBtr0100667 2 2 2 101 2R 4013112 4013130 AACTAGTATCCGATTCCGA 57 4012970 4013048 TTTCTACTACTGGAATCGGT 57 NA Drosophila melanogaster 50 Hey FBgn0027788 FBtr0088869 3 1 1 78 2R 3884715 3884733 ATCTCAAGAGTCTGCAGTC 58 3883914 3883933 ATGATATGGTAGTCCATGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11198 FBgn0033246 FBtr0088871,FBtr0113053,FBtr0088872 1 3 4 190 2R 3872609 3872627 AATGAGTCCAATGACACGG 59 3870501 3872392 GACATACTCGGCCTTAACC 59 NA Drosophila melanogaster 50 CG30497 FBgn0050497 FBtr0088932 3 1 3 155 2R 3629422 3665994 TATCCCATAATGCAGTGCG 59 3629285 3629303 GATCGATGACCCAGAACTG 59 NA Drosophila melanogaster 50 Orc1 FBgn0022772 FBtr0088959 3 1 1 141 2R 3410953 3410971 CTGGATATCTTGTGCAACC 58 3410767 3410848 AGGTGACTTTACCCATCAG 58 NA Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995 2 9 9 157 2R 3355133 3355208 AGAAGTTGTCATCAGCTCG 59 3354994 3355012 GTAGTAGTTGGTCAGCACC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111052 3 1 60 99 2R 3236476 3242402 CAGTACCCTTCTTTAGATGGT 58 3236397 3236415 ATGAGAGTACCAGAGACCT 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111049,FBtr0111068 1 2 60 151 2R 3234633 3234651 TATTGTGGTGACCAAGACC 59 3219874 3234518 ATCTGGGAGGTACATTGAC 58 NA Drosophila melanogaster 50 CG12828 FBgn0033145 FBtr0112770 1 1 1 73 2R 3037040 3037058 ATACTGTCCCATTGTGTCG 59 3036985 3037003 TAGCAACCGTTGATAAAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CheB42b FBgn0066293 FBtr0086192 2 1 1 101 2R 2831081 2831100 ACGACAAGAACCAGTATTGG 59 2830839 2831017 GTACCAGAACGGTATCAGG 59 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086205,FBtr0086195,FBtr0086202,FBtr0086199,FBtr0086200 1 5 11 130 2R 2764760 2764778 CAAGGCCTTCATTGAAGTC 58 2764161 2764179 AGTTAAATGGATGCTGGAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG3271 FBgn0033088 FBtr0086118,FBtr0086119 1 2 2 99 2R 2561684 2561772 ATATTCGCAGTGACGAGTC 59 2561835 2561853 AATAGGCAAAGGCGTAGTC 59 NA Drosophila melanogaster 50 CG9410 FBgn0033086 FBtr0086115 3 1 3 194 2R 2556694 2556712 GGACGTCAGAATCCTATGG 59 2557032 2557050 TTGTGGTAATTGCTGACGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG9410 FBgn0033086 FBtr0086117,FBtr0086115,FBtr0086116 2 3 3 61 2R 2557208 2557226 CGTCTGTTCAACTACCTCC 59 2557251 2557269 TTAGGTATGTCCTTGAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bub1 FBgn0025458 FBtr0086032 1 1 1 80 2R 1857495 1857676 CTAGTGAGCAAATGATTCCA 57 1857434 1857454 ACTCTGAGATGTATACACTGG 58 NA Drosophila melanogaster 50 CG17508 FBgn0039970 FBtr0086071 1 1 1 147 2R 1497754 1498710 GTATCAAGTGGCATAAACTTGG 59 1498815 1498836 ACGTGATACTTATTCTAGCAGG 59 NA Drosophila melanogaster 50 gus FBgn0026238 FBtr0089753 2 1 6 138 2R 1009145 1009286 CATGTCTATGTATAAGGGTGGT 59 1009028 1009046 AAGACGTTCAAACTCCCTC 59 NA Drosophila melanogaster 50 CG40127 FBgn0058127 FBtr0111266 1 1 1 90 2R 75327 75346 CCTCATTGAGGACTTACCTC 59 75189 75276 GTAGGCATTCTGATTGTATGC 59 NA Drosophila melanogaster 50 snRNA:U5:34A FBgn0003935 FBtr0080451 1 1 1 60 2L 13244869 13244888 GTCGAATAAATCTTTCGCCT 58 13244910 13244929 GACTCATTAGAGTGTTCCTC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His4:CG33871 FBgn0053871 FBtr0091875 1 1 1 60 2L 21529344 21529362 GAACGTAATTCGTGATGCC 59 21529302 21529320 GGCTGTAACTGTCTTCCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His2A:CG33838 FBgn0053838 FBtr0091842 1 1 1 60 2L 21493704 21493723 GAATTATTCCGCGTCATCTG 59 21493746 21493764 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9264 FBgn0032911 FBtr0081463,FBtr0081462 3 2 2 80 2L 21079113 21079301 GCATTATAGATCTCAGGAGGA 58 21079343 21079361 GGAACCAACTTATGGAAGC 58 NA Drosophila melanogaster 50 rtGEF FBgn0015803 FBtr0081357,FBtr0112885,FBtr0081356,FBtr0112884 3 4 4 81 2L 20355990 20356089 ATACTGGATAAGTACAAGGACG 59 20356131 20356149 TCGTGAGCACAAGTAATCC 59 NA Drosophila melanogaster 50 CG10722 FBgn0032848 FBtr0081335,FBtr0081334 3 2 2 196 2L 20095929 20096010 GAACTTCAGCGTTACAACG 59 20096167 20096188 CACTATGTGTACACAATGTACC 58 NA InUTR Drosophila melanogaster 50 Pax FBgn0041789 FBtr0100449,FBtr0081211 1 2 6 80 2L 19419922 19419940 TGTACGGAAAGATCGATCC 58 19410635 19419878 ATAGAGCATATCCTGGCAG 58 NA Drosophila melanogaster 50 Aats-asn FBgn0086443 FBtr0081162 1 1 1 60 2L 19130767 19130785 TATATCTGGAGACCTGCCT 58 19130725 19130743 CGATAGCTCTGGGAAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Faf FBgn0025608 FBtr0081126 3 1 1 80 2L 18706847 18706865 GCAGTTGTATTCAAGCTGC 59 18706728 18706803 GTGATAAACGTCAAGCACC 59 NA Nonspecific Drosophila melanogaster 50 CG15161 FBgn0032692 FBtr0081078 2 1 1 60 2L 18614732 18614752 ATAGAGAAGTGGATCACTGAG 58 18614692 18614710 GGACATCGTACATTGACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CadN FBgn0015609 FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017 3 6 12 102 2L 17651479 17652674 TCTGATACTACTCGTCTTGGT 59 17651397 17651415 GTTGATGATATTCTCGCGC 59 NA Drosophila melanogaster 50 CG6412 FBgn0032646 FBtr0080994 1 1 1 153 2L 17500037 17500055 TTCGATGGAGATCTGTGGA 59 17499797 17499815 TAGCCTTAAAGCACAATGC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 trpgamma FBgn0032593 FBtr0080946,FBtr0080945,FBtr0114470 2 3 3 80 2L 16666840 16666932 CGTATCAACTTATTTCGGAACG 59 16666781 16666801 CCTCCTCAAAGTAGCTTATCC 59 NA Drosophila melanogaster 50 CG31818 FBgn0051818 FBtr0080841 1 1 1 60 2L 16338324 16338342 CACCCAAAGTCTACTACGA 58 16338282 16338301 CTTGGCTTAGGATTTAGGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17329 FBgn0028896 FBtr0080827 2 1 1 86 2L 16291594 16291612 AAGACACTCAATCAGCGTC 59 16291662 16291680 ATGTATTCCGTTGTCCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4891 FBgn0028520 FBtr0080815 3 1 1 60 2L 16095379 16095397 CATCACTAACCGAGTCCTG 59 16095419 16095439 ATGGAGTTCCGAATATTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gli FBgn0001987 FBtr0080769,FBtr0080765,FBtr0080768,FBtr0080767 2 4 5 83 2L 15760332 15760410 GGATTACAGAACCTACACGT 59 15760268 15760286 TTTCTGCCTGGATAGTTGG 59 NA Drosophila melanogaster 50 Rab14 FBgn0015791 FBtr0080627,FBtr0080628,FBtr0080626 2 3 3 82 2L 14357909 14357927 CTAATGTTTCTCGAAGCGA 57 14358041 14358059 TTCTGGTAAATCTTGCGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG16879 FBgn0028904 FBtr0080596 1 1 1 80 2L 14105301 14105319 CTACAATGTGCACATGGAG 58 14105363 14105480 GTTTCAGTGATAATGCGGT 58 NA Drosophila melanogaster 50 DnaJ-H FBgn0032474 FBtr0080494,FBtr0080493 1 2 2 81 2L 13164329 13164347 TTACCTTCATGGGTCTCAG 58 13164154 13164172 TTCTTGTCGTCCCTTATGG 58 NA DesignNoJunction Drosophila melanogaster 50 sala FBgn0003313 FBtr0080237 3 1 1 60 2L 11486577 11486596 GGAACTAATCCAGTTGAGTC 57 11486617 11486637 GATGTTCCGGATATTCATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 salr FBgn0000287 FBtr0080235,FBtr0080236 1 2 2 119 2L 11372325 11372343 AACTTCAGTTCGAGTTCCG 59 11372424 11372533 CATATGGACCTTGAGATTCCC 59 NA Drosophila melanogaster 50 CG6700 FBgn0032305 FBtr0080187 1 1 1 80 2L 10839575 10839594 CACATGATTGAATGGTTCCT 58 10839451 10839535 GCTAATGTTAGGACGATAAGAC 58 NA Drosophila melanogaster 50 CG17107 FBgn0032281 FBtr0080107 3 1 1 274 2L 10682015 10682033 TTTCTAATCTTCGCCCTGG 59 10682271 10682289 TTTCGAGCCTATCCATGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Sps2 FBgn0032224 FBtr0079998,FBtr0079997 3 2 2 140 2L 10343347 10343422 ATAATACTACCGTCAAACGC 57 10343524 10343543 ATCACTACATTCAGACAGCA 58 NA InUTR Drosophila melanogaster 50 Pen FBgn0011823 FBtr0079937 2 1 1 70 2L 10058758 10058853 ACAGATCAACAGACTGACG 59 10058887 10058905 TTGTGCTGTAGAAGGAGTC 58 NA DesignRelaxed Drosophila melanogaster 50 Cpr31A FBgn0053302 FBtr0079936 3 1 1 120 2L 10055396 10055415 GACATCAACGGATTCAATGC 59 10055498 10055516 GAGCGGAGGAAATATGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17834 FBgn0028394 FBtr0079686,FBtr0079689,FBtr0079687,FBtr0079688 2 4 4 72 2L 8536208 8536227 TGCTGGGAAGATTTCTACTG 59 8536262 8536905 GATTGTAGTTGGCGATGGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG7795 FBgn0032019 FBtr0079611 1 1 2 93 2L 8317694 8317714 GAGAATTCCTCATACCATCAC 57 8317538 8317639 ATTATTCCTTGACCTGCAG 57 NA Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079622 2 1 4 160 2L 8245101 8245119 ATTCCGGTGATGATCTTCC 59 8244491 8244977 GAGAGGTTTACCTTCTCCG 59 NA Drosophila melanogaster 50 CG8486 FBgn0031993 FBtr0079583,FBtr0079582 2 2 3 170 2L 8183484 8183502 TGACCATAAGACTGAACCG 58 8183702 8184140 GTTCACTTTCATCGCTCTC 58 NA Drosophila melanogaster 50 CG31607 FBgn0051607 FBtr0079579 3 1 1 130 2L 8154039 8154165 AGAAGAGGATCAGGTTATTCC 58 8154257 8154275 CACAATGTGGATGATCTCG 58 NA Drosophila melanogaster 50 CG31606 FBgn0051606 FBtr0079578,FBtr0079577 1 2 2 60 2L 8147879 8147898 TCGAATATGCAGAGTACAGG 58 8147921 8147939 ACTATGGTCTTTCCATGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567 3 8 9 166 2L 8089724 8105699 GCTCAATCACTTGATAAGCTG 59 8106857 8106875 GAAGGTACATCCGTCACAG 59 NA Drosophila melanogaster 50 CG7154 FBgn0031947 FBtr0079488 3 1 1 94 2L 7783885 7783903 TTTAATAGGCAGCAGTCCC 59 7784014 7784032 GTGTAAGGGCATTAAGGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG11266 FBgn0031883 FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638 1 7 7 116 2L 7036715 7036823 TTATCACGTACCACAATGCT 59 7036902 7036920 TATTCATGTCCAGTCGCTC 59 NA Drosophila melanogaster 50 Cpr FBgn0015623 FBtr0079251,FBtr0079250 2 2 2 80 2L 6344879 6344897 GCTGAGTATTGTACTGACG 57 6344940 6345044 GTATTTCTCCTTTCCTTCGG 57 NA Drosophila melanogaster 50 mtm FBgn0025742 FBtr0079223 3 1 1 60 2L 6036013 6036031 ATTACAAGGTGTTCCCAGC 59 6035971 6035989 CTTCATCGTCGGAATTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tkv FBgn0003716 FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086 2 4 4 228 2L 5221390 5221470 TTCTCATGTGCAAGGTAGC 59 5221180 5221198 AAACATAAGCTAGCCACGA 58 NA DesignRelaxed Drosophila melanogaster 50 RpL37A FBgn0028696 FBtr0079016,FBtr0079017 1 2 2 238 2L 5071263 5071281 TATGGTACCCGTTATGGTG 58 5071736 5071754 TACTGTTCCTTGGTTTCAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG12194 FBgn0031636 FBtr0077385 2 1 1 80 2L 4840095 4840173 TTGATTCTAGGTTGGATGGA 58 4840216 4840234 TAGTTTGGCCAATTCTCCA 58 NA Drosophila melanogaster 50 CG15423 FBgn0031580 FBtr0077506 3 1 1 60 2L 4006166 4006184 AAGGCCAATTGTAGAGGTG 59 4006208 4006226 GATCTCAATCACTGGTCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 for FBgn0000721 FBtr0089311,FBtr0089304,FBtr0089307,FBtr0089312,FBtr0089310,FBtr0089309,FBtr0089306,FBtr0100363,FBtr0089308,FBtr0089305 2 10 10 81 2L 3624268 3624289 GCTAATTTCCAATCTAGACGAG 58 3623866 3624229 GAATTCCTCGTTGATCTTTCTG 59 NA Drosophila melanogaster 50 CG3332 FBgn0031514 FBtr0077608,FBtr0077609 2 2 2 84 2L 3276462 3276540 GATAACGGGCATGATCCTC 59 3276396 3276415 GAGATTGTCCAGATCCATCG 59 NA Drosophila melanogaster 50 Alp23B FBgn0031461 FBtr0077720,FBtr0077721 1 2 2 93 2L 2810634 2811157 AATGTGCAAGATGAGTGGA 59 2811214 2811232 AGGTGATTTGGATGAGGTG 59 NA Drosophila melanogaster 50 CG3077 FBgn0031457 FBtr0077736 2 1 1 175 2L 2764546 2764564 GTGCGATATTGATCTGCTG 58 2764326 2764346 GATCGATCTTGTGTATAGCCT 59 NA DesignNoJunction Drosophila melanogaster 50 GlyP FBgn0004507 FBtr0100485,FBtr0077828 3 2 2 77 2L 2134900 2134918 CAACAACCACGTAAACACG 59 2134958 2135047 CCATCGTTGAAGAACTTGAG 58 NA DesignRelaxed Drosophila melanogaster 50 Gr22e FBgn0045497 FBtr0077888 3 1 1 60 2L 1784450 1784471 GTAATTATTCTCTGGAGGAGTG 57 1784492 1784510 GAGAAGCCTTTGTACAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14352 FBgn0031351 FBtr0077876 2 1 1 61 2L 1612055 1612073 CTCTACCGAAGTCAAGCTC 59 1612096 1612116 AGTAGTTTGGTCTGTCAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14340 FBgn0031302 FBtr0077955 3 1 1 152 2L 1113625 1113643 TAAATCCCGATTTCCAGCA 58 1113757 1113837 GGCTACTTTCAGATTTCTGTG 58 NA Drosophila melanogaster 50 PNUTS FBgn0053526 FBtr0091486,FBtr0091489,FBtr0091487,FBtr0091488 2 4 4 63 2L 872031 872049 CTCAGCACCTATTCTGGTC 59 872076 872221 TAGAATGCGTACACCTTCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG33127 FBgn0053127 FBtr0078052 3 1 1 66 2L 322202 322221 CCTGACATTGAGGGATACAG 59 322247 322268 ATCGTAGCCATCTATAATCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31973 FBgn0051973 FBtr0113416,FBtr0078163,FBtr0078164 2 3 4 92 2L 38598 38618 CGATGGTATTATTCACCAAGC 59 35204 38544 GACTCAACTCTATAGGCGG 58 NA Drosophila melanogaster 50 CG41105 FBgn0069939 FBtr0111201 2 1 2 195 X 22268593 22268611 TTCTCTTAACCGAGATGGG 58 22268770 22269584 AGGAATAGTCCATCCTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hs3st-B FBgn0031005 FBtr0074676 2 1 1 177 X 19144234 19144804 AAATTACTGATTGTGGTGCG 59 19144944 19144962 CCAGATAGCGTGCATAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6540 FBgn0030943 FBtr0074601 2 1 1 108 X 18542383 18542401 CAACCAGACCCAGTATCTG 59 18542471 18542550 GGCGAAACTTATATTAGAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 os FBgn0004956 FBtr0074581,FBtr0112847 3 2 2 71 X 18201313 18201331 GTGGCAACTATCATCCCTC 59 18201185 18201278 TCAGCTGATTGAAGCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PGRP-LE FBgn0030695 FBtr0074183 2 1 1 157 X 15695627 15695717 AGTGCTTCCACATTGAGTC 59 15695488 15695507 GCATCCAATGAAACTGATCC 59 NA DesignNoJunction Drosophila melanogaster 50 Grip128 FBgn0026433 FBtr0074075,FBtr0100271 2 2 2 139 X 15362477 15362559 GATCACGGATTCCTGTCTG 59 15362356 15362375 TGTTTGGTCGGGATTATAGG 59 NA InUTR Drosophila melanogaster 50 HDAC4 FBgn0041210 FBtr0073798,FBtr0100425,FBtr0073797 2 3 3 182 X 13159291 13159378 GATAGCCATACAGCAAACG 58 13159022 13159040 GTTTCATCCTGATCCATCG 57 NA Drosophila melanogaster 50 CG1354 FBgn0030151 FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386 2 4 4 98 X 9674840 9674858 CCGAATACGATTCGATGCT 59 9674919 9675204 TCAAGGCCTCAATATCATGG 59 NA Drosophila melanogaster 50 Sp1 FBgn0020378 FBtr0112894 2 1 3 96 X 9647339 9647592 TAACATCACAGCTAGTCGC 59 9647652 9647670 GGATGACTGTGATCCAGAG 59 NA Drosophila melanogaster 50 Cp7Fc FBgn0014466 FBtr0071202 2 1 1 60 X 8371182 8371203 CTATACTACTCTTGTTGGTCTC 57 8371222 8371314 GATTCACTTAGATTCTCAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18155 FBgn0029945 FBtr0071051 3 1 1 233 X 7223255 7223356 CGAATTGATACATAAGGATGGC 59 7223632 7223651 TATGTTACATTCGAAAGCGC 59 NA DesignNoJunction Drosophila melanogaster 50 Marf FBgn0029870 FBtr0070909,FBtr0070910,FBtr0070908 1 3 3 102 X 6262083 6262570 AGGAATCGGTTAAGTCTCAG 58 6262635 6262653 ACGAAGAATACCCTTTCGG 59 NA Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 3 13 13 81 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567131 2567221 CTGTATTGAGAGCTCATGCT 59 NA Drosophila melanogaster 50 A3-3 FBgn0028550 FBtr0070244 2 1 1 237 X 1146119 1154000 CATTTATTGATTCGATGCCG 57 1145901 1145921 GCTTATCACATGTCAAACTCG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 svr FBgn0004648 FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070086,FBtr0070082,FBtr0070085 2 7 7 108 X 396239 396323 CTATGACAACTCCTTGGCT 58 396394 396413 CATAATCGGATGGTTGTCAG 58 NA Drosophila melanogaster 50 CG41428 FBgn0085647 FBtr0114091 1 1 1 67 U 4185389 4186970 GACGTTCTGAACTGAAAGC 59 4185340 4185359 CGACTTGATATTTACGGCAG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41561 FBgn0085692 FBtr0114141 3 1 1 60 U 4051896 4051915 GTAAGACCCTCTGATATGCT 58 4051797 4051876 GAATACATTTGCATAGATCCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sphinx FBgn0083990 FBtr0111044 1 1 3 60 4 996136 996157 CCACTTTAAGATTCCTGTAGTG 58 996177 997399 TTTACACAAGATGGAGAAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bnk FBgn0004389 FBtr0085754 3 1 1 168 3R 27019407 27019426 ATGTCCAAGCGAAATAATGG 58 27019557 27019575 ACTCAAAGGTGTTGGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2246 FBgn0039790 FBtr0085677,FBtr0085676,FBtr0085674,FBtr0085678,FBtr0085675,FBtr0085673 3 6 6 82 3R 26421160 26421180 GGAGACTATTGTGGAGATCAG 59 26421037 26421117 TATTGTTGGCATCCTTTGTG 58 NA Drosophila melanogaster 50 alph FBgn0086361 FBtr0085446,FBtr0085442,FBtr0085444,FBtr0085443,FBtr0085445 1 5 5 80 3R 25423005 25423023 TGAAGTGTCTGCAGAACAG 59 25423065 25423157 GCTCGATAACGTGATATTTGG 59 NA Drosophila melanogaster 50 CG14507 FBgn0039655 FBtr0113305 2 1 1 72 3R 25052648 25052955 GATCATAGGGACACTCGAC 58 25052594 25052612 GGAACTCCAGACGAATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3368 FBgn0039508 FBtr0085163 3 1 1 63 3R 23111733 23111809 TCTGGTTAACGTTGAAGGG 59 23111836 23111854 GTTTGCAATTGGTAACACC 57 NA DesignNoJunction Drosophila melanogaster 50 CG11771 FBgn0039252 FBtr0084748 2 1 1 97 3R 20757945 20758021 GGTTACATAGTGCTGGTACC 59 20758081 20758099 ATGGTGATGTCACTGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15025 FBgn0038709 FBtr0083768 2 1 1 61 3R 15316150 15316302 ATCTAAGCCTTCTGTATCCG 58 15316108 15316132 CTATATCCTTGATACTCCTAGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12269 FBgn0038665 FBtr0083722 1 1 1 84 3R 14804290 14804383 ATCTCATCAAGAGCATGGC 59 14804224 14804242 AAGTCCTCATCGGAAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083348 2 1 6 93 3R 12484784 12558454 TATCGCAGGTACAAATGGTC 59 12484710 12484728 ATGATTCGTGTGGAACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst89B FBgn0020399 FBtr0083260 1 1 1 90 3R 12093123 12093141 TTTGGATGATCTTCTCCGC 59 12093268 12093288 CCAAACCAATTGAGTAGACAC 59 NA DesignNoJunction Drosophila melanogaster 50 CycC FBgn0004597 FBtr0083010 1 1 1 60 3R 10715231 10715249 GCGTATCGTAAACGATTCC 58 10715129 10715209 GATCTGGTAAGGAGGATAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082801,FBtr0082806 3 2 8 98 3R 9488125 9488709 AAATCATCCTCTCGTTATGG 57 9488770 9491189 GTAATCCTTGAGATCCTGC 57 NA Drosophila melanogaster 50 Octbeta3R FBgn0053959 FBtr0099995,FBtr0099997,FBtr0099998,FBtr0099996,FBtr0099999 1 5 5 80 3R 8338734 8338873 CTTTCTGTGGTATGTCATCAC 58 8338674 8338692 ATCCAGAATAACACCACCA 58 NA Drosophila melanogaster 50 CG34304 FBgn0085333 FBtr0112500 2 1 1 294 3R 6484545 6484563 CATTTCCGTCACATTGACG 59 6485005 6487124 CACCGACAAAGAACATCTG 58 NA DesignNoJunction Drosophila melanogaster 50 AP-47 FBgn0024833 FBtr0082114 3 1 1 184 3R 5384309 5384327 TCTCAACGACAAGGTTCTG 59 5384084 5384161 GTTTGACATGCGTGTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pbprp4 FBgn0011282 FBtr0112867 1 1 2 112 3R 3077101 3077119 TGGATGACATATCCACCAC 58 3076952 3077025 CAAGACATTGGTCATCGAC 58 NA Drosophila melanogaster 50 CG1041 FBgn0037440 FBtr0110774 3 1 2 97 3R 2199092 2199189 TATCAAAGCCCAACGTCTG 59 2198948 2199033 GAGTTCTTGGTCAAATTCCAC 59 NA Drosophila melanogaster 50 CG2091 FBgn0037372 FBtr0078678 1 1 1 118 3R 1580116 1580134 GAAGAGTCTCCCAAGAAGC 59 1579955 1580034 TTCACACTGCACAAATCCT 59 NA DesignNoJunction Drosophila melanogaster 50 MTA1-like FBgn0027951 FBtr0078734,FBtr0078733 3 2 2 91 3R 1466844 1466862 CTCACAATAATTCCCACGC 58 1466658 1466792 GGAACTATAGTAACTTCAGTGC 58 NA Drosophila melanogaster 50 ORMDL FBgn0037110 FBtr0078423 2 1 1 222 3L 21628593 21628611 CTCTTCTTATCAGTGCCCT 58 21628853 21629088 AAAGAACAATGGGAACAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG33283 FBgn0053283 FBtr0078285 3 1 1 119 3L 20972271 20972289 GGAGTGAGAAGAGTTCTCC 58 20972372 20972475 CTTGGACCACTTCTCTTCC 59 NA Drosophila melanogaster 50 CG13252 FBgn0037016 FBtr0078245 2 1 1 215 3L 20730547 20730566 TATTTGTTTCCAGTGCAACG 59 20735860 20735880 GACCTCTATTGTAGGATACCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17637 FBgn0037004 FBtr0078207 1 1 1 60 3L 20497987 20498008 CTTAAATGGAGAAGGAAAGGTG 58 20498027 20498047 GACTATATTCTGTGAGGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32223 FBgn0036946 FBtr0074861 1 1 1 190 3L 20183913 20183932 CTCCTTCATCCATGATCAGG 59 20162148 20183760 GGATTCGAGTCGTTACCTG 59 NA Drosophila melanogaster 50 Su(z)12 FBgn0020887 FBtr0074917,FBtr0074916 3 2 2 119 3L 19914079 19914162 GGTCACAACAGACTCTACC 59 19913978 19913996 CATCTGGATGGTCTTCTGG 59 NA Drosophila melanogaster 50 l(3)neo26 FBgn0036815 FBtr0075057,FBtr0075056 1 2 2 61 3L 18814990 18815008 TTCAGCCGATTCCAAAGAG 59 18815030 18815051 CAAGTAAATATCCATGGACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13380 FBgn0036799 FBtr0100555 2 1 1 60 3L 18608865 18608883 TAACTAGACTGCGCTTCTC 58 18594546 18608843 GCACTCCAATTTCTAATGCTG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG7320 FBgn0036782 FBtr0075128 3 1 1 61 3L 18194843 18194924 ACAGATAAGGAACAGTATGTGG 59 18194943 18194964 CTGAAGTCTTCATAGAAACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32158 FBgn0052158 FBtr0075402,FBtr0075406,FBtr0075407,FBtr0113426 2 4 7 106 3L 16501641 16501659 ATGTGAACGGTAGCATCAG 59 16501154 16501572 CAGCAGGAAGGTATTGTAGG 59 NA Drosophila melanogaster 50 CG33061 FBgn0053061 FBtr0113448 2 1 1 169 3L 16323459 16323477 GATCGAGGAGTCCATTTGG 59 16323609 16323688 GAAGTGTTGCTCAACTTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4962 FBgn0036597 FBtr0075471 2 1 1 152 3L 16288493 16288574 CTGATTGCCCTCATCTCTG 59 16288359 16288377 GTAGCTCTTGATGATCGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bbg FBgn0036425 FBtr0075726 1 1 1 60 3L 14504030 14504048 TGAAGAGGAGTTCTCCTCC 59 14503004 14504006 CGATTTGACAAGGTTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13309 FBgn0035933 FBtr0076582 3 1 1 63 3L 8804028 8804117 GCAGGCAATATGTGAACTG 59 8804143 8804162 GGACAAGTGTACACATTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cp19 FBgn0000358 FBtr0076573 2 1 1 109 3L 8723010 8723117 GAACAAGTTCGCTACTCTG 58 8723190 8723208 TATCCTGACCGTAAGATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8005 FBgn0035854 FBtr0076695 1 1 1 78 3L 8191506 8191526 AAGCTCTTCGAATCCTATGTG 59 8191565 8191642 GCATTCTGTTAATTTCCCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13299 FBgn0035694 FBtr0077013 3 1 1 61 3L 6225403 6225421 ACCTCAGAAAGCAAGATGG 59 6225297 6225378 TTGATTGTCTGCATGACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13297 FBgn0035685 FBtr0077020 3 1 1 63 3L 6149979 6150189 AACTACACTCTTCCTGATGG 58 6149935 6149953 CTGAAGTTCCACTCAGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32249 FBgn0052249 FBtr0073303 3 1 1 268 3L 4469067 4470099 AATTTCTTTCTGGCTTGGC 58 4470331 4470349 CAGATAGGTGTTACGAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 metl FBgn0035247 FBtr0072813 3 1 2 291 3L 1638854 1639059 CTTCAAGCACAATGCTTGG 59 1638581 1638599 TGTGTTTCCTACTCCACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7879 FBgn0035235 FBtr0072827,FBtr0072826 2 2 2 173 3L 1562995 1563981 CTTTCATCGCTTTCAGCAC 59 1562840 1562858 GAACTGGAACCGATACTGG 59 NA DesignNoJunction Drosophila melanogaster 50 rno FBgn0035106 FBtr0072531,FBtr0072532 2 2 2 137 3L 197455 197473 ATGAGAATGTCATCTGCGA 58 197278 197354 ATAGCCATTGTCCTGATGG 59 NA Drosophila melanogaster 50 CG16837 FBgn0035009 FBtr0072297 3 1 1 65 2R 20363003 20363024 AGTTCGAGGTTATCAGTAACTG 59 20363049 20363139 AATAACCGCCTTCTTTACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shu FBgn0003401 FBtr0072237 3 1 1 236 2R 19730066 19730084 CTCATAGGAGATGCGAAGG 59 19729773 19729866 TTGGTTCAGGGTAGTAAGC 58 NA DesignNoJunction Drosophila melanogaster 50 yellow-d FBgn0041712 FBtr0072011 2 1 1 128 2R 19267484 19267503 TACAATTCGCGAAACTTTGG 59 19267594 19267673 TTTCTGGTAGCGATTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30194 FBgn0050194 FBtr0071954,FBtr0071955,FBtr0071956 2 3 3 119 2R 18947457 18947475 GGTCTACATCTACACGTCG 59 18947617 18947635 ACATCCTGATCCTTGAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Gmer FBgn0034794 FBtr0071905 1 1 1 99 2R 18775301 18775375 AATGGAAGACTGGTCTGTG 59 18775220 18775238 TAAATGCGTAGTCTGGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9308 FBgn0034681 FBtr0071749 3 1 1 60 2R 17922941 17922959 GGCGTGGTCTATATTTGGA 59 17922982 17923001 GTAGTATACCTCCAGAACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10433 FBgn0034638 FBtr0071691 1 1 2 169 2R 17494114 17494195 AGTTACTACATGCTGCAGG 59 17493856 17493981 TTTGATCGGAGTTCGTAGC 59 NA Drosophila melanogaster 50 CG18067 FBgn0034512 FBtr0086216 1 1 1 61 2R 16422047 16422065 GAGCTTGGATTCTACTGGG 59 16422090 16422169 TATATTCGCAGCGCTAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8920 FBgn0027529 FBtr0086280,FBtr0086279 1 2 3 95 2R 16207520 16209195 GTAATCAGGTGTTCATCACAG 58 16209252 16209270 ATAAGCTTGTGGACTTGCT 59 NA Drosophila melanogaster 50 Obp56d FBgn0034470 FBtr0086477 3 1 1 62 2R 15591018 15591036 AAACGGCAATTTCGATGAC 59 15590974 15590993 TTCTCCAAGAAACAATTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 olf186-F FBgn0041585 FBtr0086798,FBtr0086797,FBtr0086795 2 3 5 224 2R 13745256 13745274 TAAAGGCATCCAGCAAGAC 59 13746921 13746940 GGACCAGGGAAATACTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8950 FBgn0034186 FBtr0087013 1 1 1 62 2R 12948300 12948374 CAGGATCTTCAGGATCCTG 58 12948256 12948274 ATCTTTGACGGTCAGATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9001 FBgn0034175 FBtr0087060 3 1 1 107 2R 12887577 12887595 CATTTCTGGGATGATCCAC 57 12887435 12887506 GTAGGCCACTTGTATGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ef1beta FBgn0028737 FBtr0087041 3 1 1 134 2R 12755779 12755798 TGTTAAACGCGAATTTACCC 59 12755895 12756012 CCTTGCTGGGAGTATATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33017 FBgn0053017 FBtr0087135 3 1 1 70 2R 12160144 12160225 GAGGAGGAAGCTAACTGTC 59 12160258 12160277 GATATGAATGTGTCCTCCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fs FBgn0034004 FBtr0087398 1 1 1 131 2R 11111896 11111914 AAAGGATAACTGCCTGGTG 59 11111717 11111735 CACGAGTTGTATGTCTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG8029 FBgn0033393 FBtr0088587,FBtr0088588 2 2 2 74 2R 5095833 5095923 CAGTCTGGAGTCACATGAC 59 5095961 5095979 AGGTACAGATAAGCCACCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG14764 FBgn0033236 FBtr0088880 1 1 1 93 2R 3841432 3841450 AGAACATCGTTGTCCAGAC 59 3835976 3835994 TTTGGGTCTATTTCGAGCT 58 NA DesignNoJunction Drosophila melanogaster 50 Prosalpha6 FBgn0026781 FBtr0088896 3 1 2 112 2R 3716004 3716146 TTTGCACACTATCGAAGCA 59 3715848 3715928 GTACTCCACTTGGTAGAGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111092,FBtr0111064,FBtr0111093,FBtr0111070,FBtr0111098,FBtr0111087,FBtr0111063,FBtr0089016,FBtr0111072,FBtr0111084,FBtr0111066,FBtr0111053,FBtr0111090,FBtr0111086,FBtr0111058,FBtr0111050,FBtr0111061,FBtr0089020,FBtr0111082,FBtr0111079,FBtr0089017,FBt 3 60 60 84 2R 3208259 3209098 CTGATAGAAAGAAACGAAACCG 59 3208196 3208215 CCATAGTATCGTAGGCTGTG 59 NA Drosophila melanogaster 50 CG15149 FBgn0032659 FBtr0081027 3 1 1 79 2L 18008267 18008286 GAAATTTCGCGAAGTATCCG 59 18008328 18008414 GAGCAGGATCTTTCTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Idgf1 FBgn0020416 FBtr0080860 1 1 1 60 2L 16445941 16445959 GCTAATCTGATGCTGTCTC 57 16445983 16446072 CATCGAAGTACCAAGTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16849 FBgn0032526 FBtr0080503 3 1 1 173 2L 13457862 13459928 AATCGATCATTCGTTTGGC 58 13460064 13460083 CCAATAGAGCTCTTAGTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6734 FBgn0032395 FBtr0080312 3 1 1 64 2L 12015032 12015050 CTTAGATCATAGCCTGGCC 59 12014923 12015004 GAGGTTTGAGCTGGTAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 RluA-2 FBgn0032256 FBtr0080032 2 1 1 80 2L 10482562 10482631 ACCAAGTAACGATGCTACTG 59 10482672 10482692 GTCTTCTTGGAATCAAAGGAC 58 NA Drosophila melanogaster 50 CG6206 FBgn0027611 FBtr0080031,FBtr0080030 1 2 2 80 2L 10460456 10460476 CACGGTTAATGAGTATGTGAG 58 10460518 10460596 CTTTCCAGAGTAACACCCT 58 NA Drosophila melanogaster 50 Ssb-c31a FBgn0015299 FBtr0079590 3 1 1 61 2L 8211494 8211568 CCAGATGATCGTATCAAGC 57 8211593 8211611 TCTGAATTTGGAGCATCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ssb-c31a FBgn0015299 FBtr0079590 1 1 1 60 2L 8211495 8211569 CAGATGATCGTATCAAGCC 57 8211593 8211611 TCTGAATTTGGAGCATCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pcp FBgn0003046 FBtr0079388 1 1 1 64 2L 7021725 7021814 TTGTGAACTTCATCGTTGC 58 7021842 7021860 GTCCGGAATGTAGGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10399 FBgn0031877 FBtr0079351 2 1 1 143 2L 6960470 6960547 CTTGCACTTACAGCAAAGC 59 6960654 6960672 GGACAATTGGTTGATCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11221 FBgn0031855 FBtr0079303 2 1 1 249 2L 6743029 6753957 GAGAAACGCTCATTCTCCT 59 6754169 6754188 GAATGAGATGGATCTGTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14005 FBgn0031739 FBtr0079160 1 1 1 280 2L 5801594 5801675 ATTTGAACGATCGCAATCG 59 5801332 5801350 CTCTGTCTTCACTACTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18269 FBgn0031719 FBtr0079103 3 1 1 60 2L 5552354 5552372 GGACAAGGATGATGAGGAG 59 5552393 5552414 CAGTTCCTGAACTAATGTATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)05714 FBgn0010607 FBtr0079050 2 1 2 71 2L 4970769 4971092 CACCAGAATATGATTAAGGGTG 58 4970719 4970737 TGAAATTATGGAGGCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3528 FBgn0031430 FBtr0077781 1 1 1 62 2L 2517592 2517663 AAAGCAAATTTCGACCGTC 59 2517548 2517566 CTGGAGATCTCTAGACCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 smo FBgn0003444 FBtr0078129 3 1 1 141 2L 279001 279021 GCATATGTCTTCTGTCTAACC 58 279124 279202 GTAAACTGAAGCAACCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 tRNA:CR32456 FBgn0052456 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-281bS FBgn0067710 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:660 FBgn0065059 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 caz FBgn0011571 FBtr0074217,FBtr0074218 3 2 2 118 X 16186668 16186931 ATGCAATAGATGTAAGACTCCC 59 16187010 16187028 ATCCACGATCATTTCCTCG 59 NA Drosophila melanogaster 50 Ste:CG33246 FBgn0053246 FBtr0073883 1 1 1 60 X 13942536 13942555 GTATTTCAGCGAGATACTGG 57 13942495 13942513 CAAGCCAGAGGAACTATCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 HDAC4 FBgn0041210 FBtr0073797 2 1 3 82 X 13170574 13176211 ATACCAATACACGATCTGCC 59 13170511 13170529 AAGTCCAATGTCAGAGTGG 59 NA Drosophila melanogaster 50 CkIIbeta FBgn0000259 FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559 1 5 6 162 X 11689033 11689147 TGTTCCAAGGCTATATGGA 57 11689687 11689705 TTGTATTCGTGCGTATGTG 58 NA InUTR Drosophila melanogaster 50 CG32698 FBgn0052698 FBtr0071386 1 1 1 111 X 9730471 9730632 AGACAAGCACAGGATATCC 58 9730707 9730725 TATATTCACTGGCGTCTGC 59 NA Drosophila melanogaster 50 norpA FBgn0004625 FBtr0070651,FBtr0070650 2 2 4 186 X 4248573 4251080 CTGATGAAGCATTGGATGC 59 4251230 4251248 ACTTGTCGAAGGTGAACTG 59 NA Drosophila melanogaster 50 CG3777 FBgn0024989 FBtr0070066,FBtr0070068,FBtr0070067 1 3 3 98 X 241723 242116 CAAACAAGACTGGTAGAAATCG 59 242175 242193 CTACTGATGTGGCATCTGG 59 NA Drosophila melanogaster 50 CR41604 FBgn0085814 FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269 3 4 4 104 U 3449415 3449487 TTTCTGAAGCAAAGTCCCA 59 3449555 3449573 CTTGATACTGATCTCCCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG1635 FBgn0039854 FBtr0085796 1 1 1 85 3R 27414945 27414963 TATGTGACCTATCTGGGCA 59 27415071 27415089 AGGTGTTTATGACAGCACC 59 NA DesignNoJunction Drosophila melanogaster 50 jar FBgn0011225 FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173 2 4 6 86 3R 20079843 20080373 CCCAAACAAATTGATCAGATCC 59 20079778 20079797 TACTTCCACTTGGACAAGTC 59 NA Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083347 1 1 6 90 3R 12558428 12558446 GTGAGTGTCCTGAAGATCC 59 12536322 12550986 GAGTATCTCTTACCCATGTCTG 59 NA Drosophila melanogaster 50 CG14891 FBgn0038445 FBtr0083302,FBtr0083301 2 2 2 60 3R 12398670 12398689 TCTGTCCTCTTATCACACGA 59 12398711 12398730 ACTTGAAGCTTAGGATTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 1 8 8 283 3R 9504401 9504476 ACACGACGTAAATCAGGAG 59 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG31559 FBgn0051559 FBtr0078616 2 1 1 69 3R 1982424 1982442 TATGTGGTACAGTTCTCGC 59 1982373 1982391 GTTTCTCCGGAATCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075013 2 1 11 180 3L 19311972 19311990 CAACAAACTGAACAGTCGC 59 19303882 19306260 ATTATATCCGACCTTCTGGC 59 NA Drosophila melanogaster 50 CG12520 FBgn0036324 FBtr0113169 2 1 1 60 3L 12895441 12895460 TAGAGTGCTTGACCATTGAC 59 12895400 12895423 CCATAGGTTCTATAACATCTAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32252 FBgn0052252 FBtr0073251 1 1 1 73 3L 4222186 4222204 GAATGCAATGTGACCTGTG 59 4222131 4222149 GCTTCACATGATTGAACCA 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 zip FBgn0005634 FBtr0072398,FBtr0072399,FBtr0100467,FBtr0100466 3 4 4 81 2R 20893443 20893461 AGCTTACGTGTCTAAACGA 58 20889957 20893401 CCGGAATATGTATAGATTAGGC 57 NA Drosophila melanogaster 50 betaTub60D FBgn0003888 FBtr0072270 2 1 1 77 2R 20193608 20193626 AGAGAAATCGTGAACCTGC 59 20198250 20198268 CTCCTCGGAAATGATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr59a FBgn0045483 FBtr0071964 3 1 1 60 2R 18969153 18969171 GTCAATAAGCGGAAATGGT 58 18969195 18969213 ACAGCATACTTGAGTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vps20 FBgn0034744 FBtr0071857,FBtr0071856 2 2 2 84 2R 18496532 18496550 CGAAATGCTTGACATCGAC 59 18496598 18496616 TATGGCGTCTATTTCCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8929 FBgn0034504 FBtr0086283,FBtr0086285,FBtr0086284 2 3 3 80 2R 16217662 16217743 ACCTGAAGGACTATATCAAGTG 59 16217782 16217802 AGTACTCATAGTAGCGTTCCT 59 NA Drosophila melanogaster 50 CG6385 FBgn0034276 FBtr0089560 1 1 1 62 2R 13642126 13642144 CTATTCTCCGCCAATACCA 58 13642017 13642035 ATCGTTTAGAGCACAGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 mthl4 FBgn0034219 FBtr0086956,FBtr0086957 2 2 2 108 2R 13333420 13333495 TTGTTGGATCTACACTGGC 59 13333330 13333349 TATGTAAATCGCCGAAAGGA 59 NA Drosophila melanogaster 50 CG8839 FBgn0033717 FBtr0087959,FBtr0087957,FBtr0087960,FBtr0087958 1 4 4 113 2R 8228117 8228135 TCTTCTACCAAGAGTCCGA 59 8227961 8227979 TCTGATTGCCGAACTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 SIP2 FBgn0061197 FBtr0089669,FBtr0089671 1 2 4 153 2R 8191187 8191205 AACAAAGGGAAGTGAGGAG 59 8190827 8191070 TTGGCATAATTACGGAGGG 59 NA Drosophila melanogaster 50 Obp47a FBgn0033573 FBtr0088200,FBtr0088199 2 2 2 60 2R 6797804 6797825 TGTCAGTAATACCGATTACTGG 59 6797845 6797864 TTTGTTATTGCCACGAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0089342,FBtr0089349 3 2 26 188 2R 6419760 6419779 GTTGAGGATTTGACACTGGA 59 6408769 6419548 GTCGTACTTCAGGTCTTGG 59 NA Drosophila melanogaster 50 CG11198 FBgn0033246 FBtr0113054,FBtr0088871 2 2 4 148 2R 3872948 3873116 AACACCAATCACAACTCCA 59 3872818 3872836 AACTGGACCTTCTTGATGC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111064,FBtr0111057,FBtr0111100 2 3 60 83 2R 3247002 3247020 CACCTTAAGGGAAAGAGCA 59 3236471 3246958 CTTGTACCATCTAAAGAAAGGC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111072,FBtr0111058 3 2 60 85 2R 3246841 3249232 GTCATCACAGAACCAATTGG 59 3246775 3246793 CTCAGCAATCTCTTGACCT 58 NA Drosophila melanogaster 50 Df31 FBgn0022893 FBtr0085919,FBtr0085920,FBtr0100293 3 3 3 78 2L 21627628 21627646 AGGATGAGGTTCAGAATGG 58 21627568 21627586 TTACTGAGTTTGCTGCTCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 dl FBgn0000462 FBtr0081005,FBtr0081006 1 2 3 107 2L 17438009 17438159 GAACCAAGAGATACCTCGC 59 17437920 17437938 GTTGTGGTTGTAGTTGCTC 58 NA Drosophila melanogaster 50 Ugt36Ba FBgn0040262 FBtr0080909 3 1 1 60 2L 16794475 16794495 CATCATGGAAGACCAAATGAC 59 16794517 16794535 CATAGTGCTGACCAGTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpII33 FBgn0026373 FBtr0080544,FBtr0080545 2 2 2 122 2L 13833874 13833892 ATAATTAAGCTGCGCAAGG 58 13833978 13833996 GTTGTCCGGATCATACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090029 1 2 17 195 2L 12726933 12726951 TATATCAAGAGCGTTGGCA 58 12727110 12736604 TATAGCTGAAGACTTGGCC 58 NA Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079623 2 1 4 87 2L 8244695 8244713 CTCCTGCCATATCCTTTGG 59 8244491 8244644 GAGAGGTTTACACAACGCT 59 NA Drosophila melanogaster 50 CG14015 FBgn0031716 FBtr0079126 1 1 1 124 2L 5538026 5538102 CATTGGACACATAAGGCTC 58 5537920 5537938 GATACGACCAGTTCTTCCA 58 NA Drosophila melanogaster 50 Rbp9 FBgn0010263 FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635 1 7 7 80 2L 2963120 2963232 GCAATCTGTTAAGGTGATTCG 59 2963273 2963292 TCTTCGTAATTCGTCATGGT 59 NA Drosophila melanogaster 50 CG7378 FBgn0030976 FBtr0074649,FBtr0113004 3 2 2 135 X 18801684 18801764 CATCTACATTGGTGATGCT 57 18801863 18801881 CATATCCCGGTAGTAGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 Or7a FBgn0030016 FBtr0071186 3 1 1 87 X 8058644 8058662 GCTCTACTATCTTCATCGC 57 8058374 8058593 TATACTGAAGTACGTGGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33692 FBgn0064121 FBtr0091675 3 1 3 165 X 6766947 6771957 AACCACATGTCACTAGCTG 59 6772086 6772104 CATTACCCGAATTCGAGGA 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG6067 FBgn0029828 FBtr0070864 3 1 1 137 X 5851208 5851226 ATACGACTGTTGACCTTGG 59 5851396 5851414 TGACGGATGGTAGTATGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14803 FBgn0023513 FBtr0070310 1 1 1 263 X 1763666 1763684 ATGATCAAGCGTTCCTAGG 59 1763911 1763994 AAATTGCATTGCTCTCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14872 FBgn0038346 FBtr0083157 2 1 2 114 3R 11334279 11334398 TAACCTAACGCAACTCTCC 59 11334183 11334201 CGAGAGTATGTCATTCTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11670 FBgn0038114 FBtr0113230,FBtr0113231 2 2 2 83 3R 8869500 8869519 AAGTCGTAAACACTATCGCT 59 8869562 8869652 GTATAAACACCTGGAAGTTCAC 58 NA Drosophila melanogaster 50 Gbeta76C FBgn0004623 FBtr0074949 2 1 1 96 3L 19681761 19681833 AATATGCCATTGGGATCTG 57 19681893 19681911 CTTCATATCTGGCGAAAGC 58 NA DesignNoJunction Drosophila melanogaster 50 PGRP-LC FBgn0035976 FBtr0089491 3 1 3 198 3L 9338223 9340757 AGATCTGGACAACATTGGTG 59 9340918 9340936 TATATCGTAGGTCTGCAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10144 FBgn0035704 FBtr0076986 2 1 1 128 3L 6486753 6486830 AGAGAATAAGCTTCCTGGT 57 6486643 6486661 AAAGCATGATGATACGCTC 57 NA DesignNoJunction Drosophila melanogaster 50 Obp57d FBgn0043536 FBtr0086264 2 1 1 60 2R 16436447 16436532 TAGAATTGCCGATTCTAACG 57 16436406 16436427 GGCTATATCTTCGTCTATTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mmp2 FBgn0033438 FBtr0088500 3 1 2 140 2R 5545211 5545229 TGACATGAAAGAGTCACGA 58 5530972 5545110 AGATACATACCCATCAAGAAGG 59 NA Drosophila melanogaster 50 CG30383 FBgn0050383 FBtr0088897 1 1 1 93 2R 3711949 3712200 TAAGAAAGGCGATTCCCTG 59 3711874 3711892 GACTTTGCTTCGATACCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31735 FBgn0051735 FBtr0080791,FBtr0080790 1 2 2 60 2L 15896633 15896747 CTGCGATTTGATTTACGCA 59 15896768 15896789 GCAGTTCTTGGTAGTTTATGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Mt2 FBgn0028707 FBtr0110911 3 1 2 143 2L 12096646 12096713 TATGCCCAATTGGATGGAC 59 12096820 12096838 CTGAAGCTTTGTGACTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 escl FBgn0032391 FBtr0100626,FBtr0080286 1 2 2 60 2L 11991253 11991332 AGCCCTTGTACAAATATAGCTC 59 11991353 11991371 ACTCCGAAGATCTGATGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me28S-C788a FBgn0086063 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG12446 FBgn0031201 FBtr0077343 3 1 1 60 X 22211991 22212009 CTGCATCGACTTAAGTCTG 57 22211949 22211970 TAAACAGCTCCATTATAGTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lcs FBgn0028583 FBtr0077220 1 1 1 60 X 21267912 21267930 CACTACAGAGTCCTCTACG 58 21267870 21267889 TTATTCTGTGGAGGATGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hydra FBgn0031128 FBtr0077294,FBtr0077295 2 2 2 94 X 20542568 20542708 CCTTAAAGTAGAAGTCGTGGT 59 20542494 20542513 TATGGGTATGATTGGGTTGG 59 NA Drosophila melanogaster 50 CG11710 FBgn0031115 FBtr0089643,FBtr0089642 1 2 2 117 X 20298917 20298935 TACCGAGAGCTATATCCCA 58 20298758 20298836 GCAGCTCGTATATCTTGTG 58 NA Drosophila melanogaster 50 sw FBgn0003654 FBtr0089399 3 1 13 92 X 20105893 20105911 AAGAGACACTGGTCTACAC 58 20101659 20104508 CTTCGTCGTCATAATAATCCG 58 NA Drosophila melanogaster 50 CG34331 FBgn0085360 FBtr0112533 3 1 1 105 X 20016514 20016532 GAGATGAGCGCAATAAAGC 59 20016601 20016619 TATCGGGAACATTCGTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12702 FBgn0031070 FBtr0074809 3 1 1 110 X 19654455 19654531 CTGTAGCAAAGCATGTGTC 59 19654363 19654381 AGATCGAGCTTAGATTGCG 59 NA Drosophila melanogaster 50 CG32533 FBgn0052533 FBtr0074786 2 1 1 105 X 19372183 19372201 AAACGCTCTCAGAGAAACC 59 19372042 19372060 CGAAGATAAGGACGTCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7326 FBgn0030970 FBtr0074653 3 1 1 60 X 18757174 18757192 AACCAATTAGCTTAGTGCC 57 18757132 18757150 ATGACCACATAGTTGAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32563 FBgn0052563 FBtr0074391 3 1 1 60 X 17102927 17102946 CATCGATACCTTCGATACCT 58 17102968 17102987 TCCACATTATCATTGACCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12433 FBgn0030811 FBtr0074379 2 1 1 60 X 16917152 16917172 GGATCAAAGTCGAGATATTGG 58 16917194 16917212 ATGAAGCCTGAAACTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13002 FBgn0030804 FBtr0074343 2 1 1 78 X 16784352 16784370 GGAGGAGATGATTTGTCCG 59 16784541 16784559 GTTTCTCACAAACACGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9609 FBgn0030787 FBtr0074356 3 1 1 64 X 16680118 16680138 GACAAATGGACGTTGTATACG 59 16680074 16680092 CACTTATGGCGATTCTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32574 FBgn0052574 FBtr0074329 1 1 1 133 X 16637873 16637974 AAATTCAGGCCGAATACGA 59 16638071 16638089 GTAGTTAGAGCTGCCAGAG 59 NA Drosophila melanogaster 50 nonA FBgn0004227 FBtr0074233 1 1 3 60 X 16259644 16259662 TGATTGGAAACAATGCTGC 59 16265357 16265375 TTTATAGGACCGTCAAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CalpC FBgn0030741 FBtr0074226 1 1 1 60 X 16220051 16220070 TCTTCGGTCTTCTACTACCA 59 16220093 16220111 AATCCATGATACGCTTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lcch3 FBgn0010240 FBtr0074129,FBtr0074127,FBtr0074128 2 3 3 96 X 15821838 15821859 TGCCGTTAACTATACTTACTGG 59 15821915 15822000 GGATCTTTCACTCTTTCCGA 59 NA Drosophila melanogaster 50 Myb FBgn0002914 FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169 3 4 5 86 X 15749879 15749897 CCAAGGTCTATAATCGCGT 59 15749747 15749829 GTCCAAGTTGACTCTTGTG 58 NA Drosophila melanogaster 50 CG32581 FBgn0052581 FBtr0113439,FBtr0074184 1 2 2 196 X 15691625 15691707 GATCCACGTAACAAAGTTCC 58 15691383 15691404 TCGTGTAGCCTTCTAATATCAG 59 NA Drosophila melanogaster 50 CG8974 FBgn0030693 FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186 2 5 5 211 X 15688455 15688537 GATCCACGTAACAAAGTTCC 58 15688198 15688216 TGTTCATCCTCGTATTGCC 59 NA DesignRelaxed Drosophila melanogaster 50 Rhp FBgn0026374 FBtr0074096,FBtr0074095 1 2 2 80 X 15685124 15685279 TCTATCAGAGCGAAAGTCAC 59 15685320 15685340 CCATGAAATTGATCTCCTTGG 59 NA Drosophila melanogaster 50 l(1)G0007 FBgn0026713 FBtr0073900,FBtr0073901 3 2 2 97 X 14117987 14118070 CAGAACAATTACAGTTCGACC 59 14118129 14118147 ATGATGTCCTTAAGCTGCT 58 NA Drosophila melanogaster 50 CG11727 FBgn0030299 FBtr0073546,FBtr0073547 2 2 2 88 X 11331116 11331135 GATCATACTTGGAGGTCTCG 59 11330817 11331066 GGATACGTTATTCTCCTGCA 59 NA Drosophila melanogaster 50 CG11122 FBgn0030266 FBtr0073481 3 1 1 60 X 11014721 11014741 GTCAAGTCGAAATCCAAATCC 59 11014681 11014701 GCTGATTGTAGATTCTCTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2061 FBgn0027498 FBtr0073429 1 1 3 171 X 10986856 10986874 CCATTTCCACCTGAGACAG 59 10987126 10987144 TGGCGAAAGGTGTATTCTC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG11203 FBgn0030249 FBtr0073385,FBtr0112978 2 2 2 185 X 10811067 10811140 AATCATTCCACAGGAGTGC 59 10811285 10811307 GAGGATAGATCGTCCTTATTTCC 59 NA Drosophila melanogaster 50 CG12637 FBgn0030224 FBtr0071504 3 1 1 60 X 10566720 10566738 CATTTCGAGGTGATTCTCC 57 10566678 10566698 GAATAATAGCCGGATACACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9806 FBgn0030222 FBtr0071506 3 1 1 112 X 10520296 10520314 AACACCGCAGATTATTGTC 58 10520146 10520220 CTAAATGCTCGTGACTCTG 57 NA Drosophila melanogaster 50 spri FBgn0085443 FBtr0112688,FBtr0112689 3 2 4 87 X 10386360 10390835 CGTGAAGTCTTATGTCACC 57 10386291 10386309 CCAATTGAAGGGTGTATGC 58 NA Drosophila melanogaster 50 CG32682 FBgn0052682 FBtr0071480 2 1 1 61 X 10201913 10201932 TAAACAGGTATACACTGGGC 59 10201871 10201889 TTTCTAATTCAAGTGCCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2962 FBgn0030186 FBtr0071486 3 1 1 234 X 10110588 10110609 ATCAAGTGGATTAGTAGTCAGC 59 10109948 10109966 CTGATGGATCACCTTGACC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 c11.1 FBgn0040236 FBtr0071326 1 1 1 108 X 9172925 9173001 TTCATACGCATAGGTGGAC 59 9172835 9172853 ACTTCATCTTGAGCTGCTG 59 NA Drosophila melanogaster 50 CG12772 FBgn0030055 FBtr0071221 1 1 1 107 X 8573709 8573727 TACAAGCACAAGGAACTGG 59 8573798 8573884 GAAGAATGACTGCTCCCTC 59 NA Drosophila melanogaster 50 CG1575 FBgn0029999 FBtr0071151 2 1 1 62 X 8012852 8012870 GCTCCTGAGATAGTCAGTC 58 8012896 8012914 CTCTTGGCCTTCGATATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 3 8 8 60 X 6579593 6579674 GCCTTCAATGTGACTTCTC 58 6579697 6579716 GTGGATAACTGTCCACAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 Rpt4 FBgn0028685 FBtr0070929 2 1 1 90 X 6184930 6184948 GGAGAACGATCTAAAGGCC 59 6184795 6184879 GGCCTTCACAATGAATTTATCC 59 NA Drosophila melanogaster 50 Pp2C1 FBgn0022768 FBtr0070685 2 1 1 108 X 4577452 4577534 TCCCAGTACCTTTAGATGC 58 4577362 4577380 TATCTCGCCGATTAGATGC 59 NA Drosophila melanogaster 50 CG10801 FBgn0029660 FBtr0070526 3 1 1 160 X 3355834 3355852 TTGAATTACTCCTGGACGG 58 3355976 3356094 ATCAAGGAGCAAATCTCCG 59 NA Drosophila melanogaster 50 CG14045 FBgn0040387 FBtr0070463 2 1 1 99 X 2278344 2278362 ATCAGCGATTCAACTTCCA 59 2277628 2278282 GGAACTGAGTTTAAATGGCG 59 NA Drosophila melanogaster 50 CG34052 FBgn0054052 FBtr0100107 1 1 1 91 X 2216175 2216193 GTACAGTAAGGACTGCCTG 59 2216038 2216056 TTTGGGCTGAAGTACAGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG3835 FBgn0023507 FBtr0070383,FBtr0070382,FBtr0070381 1 3 3 272 X 2038240 2038324 TTCAAGTTCCTGAACTCCC 59 2038560 2038578 AATGTTGTAGAAGTCCCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG4199 FBgn0025628 FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333 3 4 6 178 X 1965424 1965442 CAAGGAGTACAAGACCACG 59 1962328 1962346 GATCCGTAACTCTGCAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3573 FBgn0023508 FBtr0070317 1 1 1 86 X 1818996 1819014 CTGCAGGAGCTAGATACTC 58 1819061 1819148 CATCATCTTATCGATCCATTGC 59 NA Drosophila melanogaster 50 br FBgn0000210 FBtr0070267 3 1 7 140 X 1531143 1531161 TTCCCAATATCGATCCCTC 58 1554704 1554722 TTAGAGAACGCACGTTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 SNF1A FBgn0023169 FBtr0070216,FBtr0070218 3 2 3 80 X 1270213 1270739 TGTACCAGGTCATATCGAC 58 1270782 1270801 CAATATAGTCGAACAGCTCC 57 NA Drosophila melanogaster 50 SNF1A FBgn0023169 FBtr0070216,FBtr0070217,FBtr0070218 1 3 3 60 X 1271866 1271885 ATAATGCTCGAGGTATACCG 58 1271907 1271926 GATTGATGATCTTCCACTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3021 FBgn0040337 FBtr0070173 3 1 1 77 X 921170 921188 AGTTTCTGGACGATTACCA 58 921228 921247 AGAGGTCAAACTTAATGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3711 FBgn0040344 FBtr0070191 1 1 2 80 X 818946 819022 CTATGAAGGCAATATAGGAACC 58 818887 818905 ATGTCGCAGAAATCTTTGC 59 NA Drosophila melanogaster 50 CR41571 FBgn0085804 FBtr0114258 1 1 1 60 U 5607584 5607603 GGAGTTAGAGCTATTCTCGG 59 5607543 5607561 TGCATTCTCTGAAACTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40741 FBgn0085771 FBtr0114221 1 1 1 60 U 8864062 8864081 AGGTGTTGTAAGTGGTTGAG 59 8864103 8864122 AAGCAAAGGATAAGCTTCAG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40560 FBgn0085743 FBtr0114193 2 1 1 60 U 3558057 3558075 GATGGAATTTACCACCCAC 58 3558015 3558033 GATGTTTCCAAAGAGTCGT 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40947 FBgn0085540 FBtr0113953 2 1 1 162 U 8131646 8131664 TTCAGGACTCATTCAACCG 59 8131502 8131520 ATATAATTCACGCCACGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41429 FBgn0085648 FBtr0114092 1 1 1 60 U 2235768 2235786 TAGGTAGGTTTGAAAGCGC 59 2235726 2235744 TTCTTCACCAGCTGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41130 FBgn0069921 FBtr0100311 3 1 1 62 4 1223118 1223137 TAAAGCGTGTCCTTTACCAG 59 1223162 1223180 GTCATACAAAGTGGCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33521 FBgn0053521 FBtr0091471,FBtr0091472 2 2 4 191 4 1207180 1207198 TTCGGAAATGGATTACCCT 58 1208237 1208378 CTTCTCAGGTATTGTAGATCGA 58 NA Drosophila melanogaster 50 Eph FBgn0025936 FBtr0089085,FBtr0089084 1 2 5 80 4 637967 638981 TCATTTAAACGTGACGACG 58 639022 639043 GCTTGATTAGGATCTTCATAGG 58 NA Drosophila melanogaster 50 Eph FBgn0025936 FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086 3 4 5 110 4 640795 640889 GCTCAACAGATATCCAGGT 58 640961 640981 TATTATAGTGTCGAGTTGCCG 59 NA Drosophila melanogaster 50 Asator FBgn0039908 FBtr0089108,FBtr0089109,FBtr0089107 2 3 3 80 4 499215 499233 AACAAACTCCCAAGTAGCC 59 498699 499173 AGCTTCGTATACTGTACATCC 59 NA Drosophila melanogaster 50 CG11539 FBgn0039859 FBtr0085868 3 1 1 68 3R 27441574 27441592 TGACCTTAGAAGAGGAGCA 59 27441524 27441542 CAATGAAGGTCAGCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34347 FBgn0085376 FBtr0112556 2 1 1 81 3R 27186209 27186229 TTACGAATGGTAGTGGATCTG 59 27186270 27186403 GTGCTTTGATAGTAAAGTCCC 58 NA Drosophila melanogaster 50 zwilch FBgn0061476 FBtr0085777 1 1 1 93 3R 27037101 27037119 AGTTCCGCGAACTAAAGAC 59 27036965 27037045 ATCTCCTTGTCATCACACTG 59 NA Drosophila melanogaster 50 CG1544 FBgn0039827 FBtr0085755,FBtr0113311,FBtr0085756 1 3 3 86 3R 27027533 27027613 CGAAGACTTTAACATCCATCC 58 27027661 27027679 CAATCGATCTTGACTCCGT 59 NA Drosophila melanogaster 50 CG2246 FBgn0039790 FBtr0085677,FBtr0085676,FBtr0085674,FBtr0085678,FBtr0085675,FBtr0085673 2 6 6 81 3R 26421160 26421180 GGAGACTATTGTGGAGATCAG 59 26421038 26421117 ATTGTTGGCATCCTTTGTG 58 NA Drosophila melanogaster 50 CG2241 FBgn0039788 FBtr0085680 2 1 1 60 3R 26408510 26408528 TTCGAGAATGGTAAGGGAG 58 26408468 26408488 GAATATTATGGATGGAGCGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31524 FBgn0051524 FBtr0110860 2 1 2 93 3R 26339622 26339696 ATAAACCCGTGATTCATGAG 57 26339548 26339567 CTTATAGCTTCTGATGCGTC 58 NA Drosophila melanogaster 50 CG7911 FBgn0039735 FBtr0085606,FBtr0113308 3 2 2 94 3R 25829774 25829792 AGACCAAATGTCGAGTTCC 59 25829613 25829716 AAGTTCATCTCGACCTTGC 59 NA Nonspecific Drosophila melanogaster 50 CG31036 FBgn0051036 FBtr0114571,FBtr0085501 2 2 2 80 3R 25736317 25736401 AAATCTGAACCCTACATCAGG 59 25736442 25736461 GTTAAAGAATCCAGCCTGTC 58 NA Drosophila melanogaster 50 CG31038 FBgn0051038 FBtr0085498,FBtr0085499,FBtr0085497,FBtr0085494 1 4 6 80 3R 25723358 25727914 GAAGGAAATGAACGGACTG 58 25727958 25727976 AACTCTTGGATCGATTCGT 58 NA Drosophila melanogaster 50 RpS8 FBgn0039713 FBtr0085489 2 1 1 204 3R 25688837 25688855 ATGAAGAAGTACCTGGAGC 58 25689241 25689259 GCAAGCTTATCTAGTGCCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Obp99c FBgn0039682 FBtr0085463 2 1 1 93 3R 25511891 25511909 AGACTGGTGAGGAGATCAG 59 25511816 25511834 AAGATCAGGTTCTTCAGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cnx99A FBgn0015622 FBtr0110909,FBtr0085438,FBtr0085437 2 3 4 115 3R 25142077 25142449 GTGAATCGGACTCATTCGT 59 25141980 25141999 TCTACAGTAGATGGTGAGGG 59 NA Drosophila melanogaster 50 CG1957 FBgn0027873 FBtr0085357 1 1 2 60 3R 24860402 24860420 GCTGCACACTATATCTGGG 59 24860439 24860462 GTCTATCTGTAGGATATAGCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34436 FBgn0085465 FBtr0112737 3 1 1 109 3R 24108560 24108578 ATAACATCAGCAAGCTGTG 58 24108706 24108725 ACATGGTAATCATCACTGCT 59 NA DesignNoJunction Drosophila melanogaster 50 bigmax FBgn0039509 FBtr0085173 2 1 1 151 3R 23113435 23113519 CAAGTTTCAAGTGTTCCAGG 59 23113303 23113321 TACGACTGAGTATGTTGCG 59 NA Drosophila melanogaster 50 CG31076 FBgn0051076 FBtr0085079 2 1 1 68 3R 22815187 22815206 CAATTGGAAGTACTGATGCT 57 22815060 22815078 TCTGATCAGTCGCATTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14253 FBgn0039467 FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074 1 5 5 81 3R 22809875 22809893 GTATGCCTATGGAAGGCAG 59 22809935 22810014 CGGTAACTTAAAGATTTGGCTC 59 NA Drosophila melanogaster 50 CG5491 FBgn0039459 FBtr0085061 1 1 1 110 3R 22689532 22689550 CCGTGGGAATAGTTAACAC 57 22689624 22689642 ACTTGGAGCACTCAATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5484 FBgn0039450 FBtr0085037,FBtr0085039,FBtr0085038 3 3 3 107 3R 22544579 22544653 TATGCATAAGGATTGGTCCC 59 22544723 22544741 TATGTGATGTAGCCCATGG 58 NA Drosophila melanogaster 50 CG31082 FBgn0051082 FBtr0085022 3 1 1 60 3R 22412160 22412178 AGAAGGTAGTGTACCCTCC 59 22412198 22412220 CTCGATAGTGGAGTATATCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31437 FBgn0051437 FBtr0084834 1 1 1 60 3R 21209719 21209737 AATCAGGGAGGAAGATCCA 59 21209761 21209779 GTAATCTGGAACTTTGCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osbp FBgn0020626 FBtr0084801 1 1 1 60 3R 20761661 20761679 GTACTTTAGTCGCGATGTG 58 20761619 20761640 CTCGTTGTCTTTGTTCATTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13617 FBgn0039201 FBtr0084641 2 1 1 91 3R 20343032 20343105 AGAATCATCAAGAGCCCTC 58 20343160 20343178 TTCATATCGAAGCCGTGAG 59 NA Drosophila melanogaster 50 CG13606 FBgn0039161 FBtr0084553 1 1 2 273 3R 19998831 20006029 ATTCTTAGTCACCATCGCC 59 20006400 20006418 GTTCGCATTACTTTGCTGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 kal-1 FBgn0039155 FBtr0084549 1 1 1 102 3R 19972454 19972535 AAGGAGAAGGTCTATGAACTG 58 19972927 19972945 TCAGTTTGCTGAACTCCAG 59 NA Drosophila melanogaster 50 CG33108 FBgn0053108 FBtr0084504 1 1 1 60 3R 19822898 19822918 ATTGTAGGTTATCTGGTGGAC 59 19822998 19823016 ATTTACCATGACGAGCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Gdh FBgn0001098 FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498 3 4 4 98 3R 19763339 19763461 AAGCTAAGATCATTGCCGA 59 19763259 19763277 TGTACAGATCGGGAATGAC 58 NA Drosophila melanogaster 50 CG13597 FBgn0039124 FBtr0084525 1 1 1 60 3R 19718675 19718695 CTGCACAACAAATACTACTGG 59 19718635 19718656 CGAATATCAGCTTGAAATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lsd-1 FBgn0039114 FBtr0084456,FBtr0084455 3 2 3 90 3R 19590398 19590480 CCCGAAATGATGTACTGGA 59 19590533 19590552 CGATTTGCTTGACAGAATCG 59 NA Drosophila melanogaster 50 CG31225 FBgn0051225 FBtr0084414 2 1 1 60 3R 19308085 19308105 CTTGTTTATCAGGCATACCTC 58 19308126 19308145 GATGTCCTTTCAGATTTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6921 FBgn0038985 FBtr0084262,FBtr0084261 3 2 3 86 3R 18380435 18380453 TAAAGATTGTCGAGGAGCG 59 18380567 18380586 GCATAGGTGAGCTCATTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CheB93b FBgn0051438 FBtr0084090 2 1 1 128 3R 17235337 17235415 ATTACAACTCCGGGAACAG 59 17235507 17235525 ACCAGATTTGTCGAATGCA 59 NA Drosophila melanogaster 50 CG3301 FBgn0038878 FBtr0084101 1 1 2 91 3R 17100159 17100238 GCCTGTTGGAAGTAATACG 58 17100086 17100104 ATATGATATTGCACCGGCT 58 NA InUTR Drosophila melanogaster 50 CG17274 FBgn0038835 FBtr0083989,FBtr0083990 1 2 2 164 3R 16678290 16678432 CTTTGTTACAACAGGGAGG 57 16678144 16678162 GATTCAAATAGTCCACGCC 58 NA Drosophila melanogaster 50 CG17273 FBgn0027493 FBtr0083991 2 1 1 278 3R 16651604 16651624 GATAAGGTTCGTCCCTATGTC 59 16651282 16651366 GCCAATATCATTTAGCTGCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG5191 FBgn0038803 FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905 2 5 5 89 3R 16396362 16396821 ATGTCGACAGGTAAATCCTC 59 16396873 16396891 ATCACGTTGTCTATCTCCC 58 NA Drosophila melanogaster 50 GluClalpha FBgn0024963 FBtr0100127 3 1 4 102 3R 15579575 15583547 TGGCACAGATAATAAGGCC 59 15585992 15586010 GAAGGTTAACTGCACACTG 58 NA Drosophila melanogaster 50 CG5454 FBgn0038667 FBtr0083720 2 1 1 69 3R 14808953 14808971 GGAATGCCCTATATGCCTC 59 14808902 14808920 TGGGATTCATAATCGGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14304 FBgn0038629 FBtr0083639,FBtr0114497 2 2 2 80 3R 14419608 14419629 CATTACTGTGATCTCAATGGAG 58 14419482 14419568 GCAAGTTAAGGCAATCTGAC 59 NA Drosophila melanogaster 50 sr FBgn0003499 FBtr0083543,FBtr0083542 2 2 2 62 3R 13953325 13953343 TATTCCCTCGTTCTTCGGA 59 13953369 13956126 TCGATGGAACCAGTAATGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG17802 FBgn0038549 FBtr0083526 2 1 1 108 3R 13629371 13629588 CGTAACTTCCACTGTGAGG 59 13629281 13629299 TAGCACTCATTGCGATCAG 59 NA Drosophila melanogaster 50 CG31360 FBgn0051360 FBtr0083480 2 1 1 65 3R 13510991 13511009 ATTGGTGCCTTCCTATTGG 59 13511036 13511056 CATAGTGAAATTCTCCAGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17283 FBgn0038505 FBtr0083437 1 1 1 60 3R 13233695 13233716 ATAGAAGATCATTGGCAGTCAG 59 13233737 13233755 CCATGAAGAGCACTACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17477 FBgn0038479 FBtr0083418 1 1 1 60 3R 12952432 12952450 ACTGTGTCAAAGGATACCC 58 12952390 12952408 GCATAGCGAATTGTACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 abd-A FBgn0000014 FBtr0083388,FBtr0083387 3 2 2 95 3R 12635875 12635893 GAAGAAGGAGTTACGAGCC 59 12635728 12635746 GATTTCATCGTCTCCTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083348,FBtr0083352,FBtr0083351,FBtr0083350,FBtr0083347,FBtr0083349 2 6 6 65 3R 12558920 12558938 GAGCCTACAAACAGGACTG 59 12558873 12558892 TCCAAATGTCTTTGTAGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14899 FBgn0038438 FBtr0083307 3 1 1 72 3R 12309016 12309035 CTATCCTACACTGTCCAACG 59 12308907 12308925 GTGCTCATTGAAGAGACGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG14881 FBgn0038425 FBtr0083288,FBtr0083287 1 2 2 99 3R 12261004 12261022 ATTGTGTAACCTTTGCCTG 58 12261139 12261157 TATTTCCGGGTGATCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6045 FBgn0038349 FBtr0083151 1 1 1 80 3R 11371303 11371379 ATGAGTCCTATAAGATCATGCC 59 11371244 11371262 CGGCTTCCAATTCTAGGAG 59 NA Drosophila melanogaster 50 CG31392 FBgn0051392 FBtr0083088 1 1 1 89 3R 11175074 11175093 AATACTCTAGCGAACCTAGC 58 11175142 11175431 CCATCATATTGAATACTTGCCC 59 NA Drosophila melanogaster 50 CG4285 FBgn0038310 FBtr0083061 1 1 1 104 3R 11080021 11080225 AATCGAAAGGTTGATGCCT 59 11080293 11080311 TAAAGTCGGATTGCTTGGA 58 NA Drosophila melanogaster 50 CG7026 FBgn0038276 FBtr0083007 3 1 1 78 3R 10725440 10725458 TCAAGATCCTCATTGTGGA 57 10725380 10725398 TTGGAGGTCATGTAGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33331 FBgn0067628 FBtr0082998 1 1 1 61 3R 10712693 10712711 TCTTTACTTGGCAGGAAGG 59 10712733 10712754 GATTATCAGAAGGATTGACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 foxo FBgn0038197 FBtr0082887,FBtr0082886 3 2 3 83 3R 9892800 9892818 ATTTACGAGTGGATGGTCC 59 9892865 9905076 TATGGAGTTCTTCCATCCG 58 NA DesignRelaxed Drosophila melanogaster 50 sqd FBgn0086897 FBtr0082854,FBtr0082857,FBtr0082856,FBtr0082855 1 4 4 178 3R 9468818 9468901 AACGACTGAGAAGGAACTC 58 9468658 9468679 CCTTCTTGCTGTTGATTATGTG 59 NA DesignRelaxed Drosophila melanogaster 50 Paip2 FBgn0038100 FBtr0082693 2 1 1 111 3R 8809504 8809522 ATTTACGTAGTGGACGACG 59 8809597 8809678 GTTGCAGTTCGTTCTTGTC 59 NA Drosophila melanogaster 50 Men FBgn0002719 FBtr0082660,FBtr0082661 1 2 2 178 3R 8539997 8540015 TCTTGGTATTGCCAACCTG 59 8539781 8539799 AAGTATCGATGGGTTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14394 FBgn0038079 FBtr0113227,FBtr0114499 2 2 6 158 3R 8522009 8522181 CATAGTCATGCAGGTCCTG 59 8522300 8522321 GAGATGAACAGATTGATCATGG 58 NA Drosophila melanogaster 50 desat1 FBgn0086687 FBtr0082630,FBtr0082628,FBtr0082627,FBtr0082626,FBtr0082629 3 5 5 141 3R 8272219 8272237 ATTCTGAACGTAACCTGGC 59 8272402 8272421 AGACGTGATGGTAGTTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 pps FBgn0082831 FBtr0082586 3 1 1 110 3R 8243598 8243616 GTCTTTGCTGAACAACTCC 58 8243689 8243773 AACACATTAATCCGTTCCAC 58 NA Drosophila melanogaster 50 Cpn FBgn0010218 FBtr0082547 2 1 2 166 3R 7989482 7989501 CTCCAATTACAGCTCCAGAG 59 7989269 7989354 ATCTGGTTCCGTAGTTTCTG 59 NA Drosophila melanogaster 50 Lk6 FBgn0017581 FBtr0082535,FBtr0082534 3 2 2 80 3R 7581386 7581467 TATTGACACCAGTTGGCAG 59 7581324 7581344 TATCGTAATAGTGTGCCTCAC 59 NA Drosophila melanogaster 50 CG14718 FBgn0037939 FBtr0082426 2 1 1 60 3R 7527244 7527265 CGTCTACAAGAACAAGATAACG 59 7527284 7527304 ACTCACATAGGTTATAGTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Csk FBgn0086903 FBtr0082447,FBtr0082446,FBtr0082444,FBtr0082448,FBtr0082445 1 5 5 83 3R 7460836 7460854 AAATCAGACATGTGGAGCT 58 7460710 7460789 GGCTAATGGAATTCTGGGA 59 NA Drosophila melanogaster 50 CG6782 FBgn0037912 FBtr0100465,FBtr0100462,FBtr0100461,FBtr0100464 2 4 4 67 3R 7386179 7386197 ATTTGTACAAGGGTGACGA 58 7386130 7386148 GATAGCTCCAAACACTCCA 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31278 FBgn0051278 FBtr0082319 1 1 1 60 3R 6533714 6533732 AAGGTGCTAAGGAAGTTCG 59 6533672 6533690 TGAGCGATACTCCAATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Best1 FBgn0040238 FBtr0082183,FBtr0114590 1 2 2 87 3R 5991953 5992985 CAAATTGCTGCTCAGATGG 59 5991884 5991905 GTTGATCGCATAGTAAATGGTC 59 NA DesignRelaxed Drosophila melanogaster 50 Fmr1 FBgn0028734 FBtr0082200,FBtr0082198,FBtr0082199 3 3 5 193 3R 5930727 5930803 GTTTCGAATCAAGATCGCT 58 5930470 5930488 GAAGCTGCTGATCAATCTC 58 NA Drosophila melanogaster 50 mtTFB2 FBgn0037778 FBtr0082173 1 1 1 102 3R 5871965 5871983 CAAGCACTTGATCAACTCC 58 5872046 5872128 GGTGAGATGTATGTATATGGGT 58 NA Drosophila melanogaster 50 CG9471 FBgn0037749 FBtr0113211 1 1 2 79 3R 5597058 5597076 TATTATTGGAGGAACCGGC 59 5596942 5596960 ATAGCAATTTCACCGACAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG8273 FBgn0037716 FBtr0082072 1 1 1 60 3R 5405104 5405122 GGTCAAGGACAAGGTTCTC 59 5405143 5405164 GGTAAGATCTTGAATAGTGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pum FBgn0003165 FBtr0081994 2 1 5 107 3R 4982877 4982895 TTGGATTACATCACTGGCT 58 4906735 4924427 GAAACAGTTGTTGATTGTGG 57 NA Nonspecific Drosophila melanogaster 50 CG11980 FBgn0037652 FBtr0081962,FBtr0081963 2 2 3 101 3R 4830105 4830125 CCAAATAACCTTCAAGGAGAC 58 4830245 4830263 TAGTGACAGTAGACCAGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG11980 FBgn0037652 FBtr0081962,FBtr0081963,FBtr0081964 2 3 3 60 3R 4830042 4830061 GTGCGATATAATTGTCGACG 59 4830082 4830102 GTGATCGTACAATTTCTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dsx FBgn0000504 FBtr0081759 1 1 3 88 3R 3761545 3761563 GATGCCACTCATGTATGTG 58 3756395 3761493 TTATTTCCACTCGAGCCTC 59 NA Drosophila melanogaster 50 Mst84Da FBgn0004172 FBtr0081584 3 1 1 300 3R 3191578 3191598 CCACCTTCAATAGTTAACACC 58 3191914 3191933 AAGTATTCCGACAGGTTTCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG1091 FBgn0037470 FBtr0081640,FBtr0081641 2 2 2 83 3R 2909961 2909979 GCGACATTTGTCTGAACAG 59 2909838 2909916 TATATTGAGTCAGTGGCTGTG 59 NA Drosophila melanogaster 50 Ccp84Af FBgn0004778 FBtr0081695 3 1 1 61 3R 2515605 2515623 GAAGAGTCAGGTTGAGGAG 58 2515562 2515580 AATCGATCAGGGAGTACTC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1021 FBgn0037443 FBtr0081731,FBtr0081732 3 2 2 176 3R 2216940 2217037 TGCCAGAGACGATAATGTC 59 2216715 2216733 TGATTCTGCAAGTCCTTGG 59 NA Drosophila melanogaster 50 Pak FBgn0014001 FBtr0081714,FBtr0114607,FBtr0081715,FBtr0081716 1 4 4 84 3R 2184960 2184978 ATTTCAGGACTTCCTCGAC 58 2185026 2185115 TAGGAAGGGATGCTTTAGC 58 NA Drosophila melanogaster 50 CG10999 FBgn0037381 FBtr0078634 3 1 3 102 3R 1640973 1640992 GATATGAAGACCTCAAGGCT 58 1643289 1643307 TTGACTTCGTGCTCATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Spec2 FBgn0044823 FBtr0078739 2 1 1 139 3R 1444208 1444226 AGACCAACTCGATACACTC 58 1443258 1443276 AAAGGTATGTCTGCTGCTC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 exba FBgn0037346 FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745 3 7 7 85 3R 1423978 1423999 GGTTCTATTATTCGTAAAGGGC 58 1423648 1423932 CAGAACCGTTGACTAACCA 59 NA Drosophila melanogaster 50 CG2926 FBgn0037344 FBtr0078752 1 1 1 80 3R 1410390 1410904 CATCTGATAAGGATGATGACGA 59 1410331 1410351 GCAATGGTATATCCGTATCCT 59 NA Drosophila melanogaster 50 Hdac3 FBgn0025825 FBtr0078767 3 1 1 162 3R 1299663 1299750 CATTCAGTGCAATTCCGTG 59 1299519 1299537 TATGCATATGTCGCTGTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG9853 FBgn0086605 FBtr0113192,FBtr0078949 1 2 2 96 3R 225235 225253 ATACCGACAACTTCCTGTG 59 225097 225175 ATGGTCCGTTGAATAAGGG 59 NA Drosophila melanogaster 50 CG32450 FBgn0052450 FBtr0078501 1 1 1 61 3L 22323189 22323207 CTGTTTGTGGTAGTTCCCT 59 22323232 22323250 CGCACATATTTGTACACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7448 FBgn0037143 FBtr0078473 3 1 2 107 3L 21943766 21943784 AAAGACAATAGCAGCTGAG 57 21943907 21943925 GGATTGGCTAGATAACCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG5656 FBgn0037083 FBtr0078396 3 1 1 88 3L 21436827 21436949 CTGTCCAAGACTTATTGCG 58 21436757 21436775 AGATAGTTCGCCTTGATCC 58 NA Drosophila melanogaster 50 park FBgn0041100 FBtr0078318,FBtr0078319 3 2 2 130 3L 21189209 21189302 ACCGATGAAGAAAGAGTCC 58 21189097 21189115 TCACGATGGACAGTAAAGG 58 NA Drosophila melanogaster 50 CG13255 FBgn0040636 FBtr0078263 1 1 1 99 3L 20831560 20831578 ATACTGGTCAATGTGGTCC 58 20831641 20831659 CCATGATGGAGGTCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13250 FBgn0037013 FBtr0078211 2 1 1 144 3L 20527502 20527523 CAGCAACTCTTTAAGATTCGAG 59 20527627 20528289 TATAGTTGACATTCGCCAGG 59 NA Drosophila melanogaster 50 CG6434 FBgn0036972 FBtr0074844 2 1 1 117 3L 20316062 20316080 GTACTGGATGCTGAAACCT 59 20315910 20315982 TGATTAGAAATGCGTCTCCA 59 NA Drosophila melanogaster 50 CG6981 FBgn0036945 FBtr0074821,FBtr0074820 2 2 2 97 3L 20182279 20182428 AACATAAGGGAGAGCTGTG 58 20182489 20182507 GTAACCCTTCCAGTAGTGG 58 NA Drosophila melanogaster 50 CG9451 FBgn0036876 FBtr0074979 1 1 1 88 3L 19492781 19492799 CTCCAGTGAGCACTTATCC 59 19492647 19492729 CACTTTAGCACCATTGGTG 59 NA Drosophila melanogaster 50 CG12519 FBgn0036872 FBtr0074930 1 1 1 165 3L 19465718 19465736 TATTCTGGCTATCGTTGCC 59 19465865 19465883 GATAACCTGGCTACTGGTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 nes FBgn0026630 FBtr0075021,FBtr0075020,FBtr0075019 1 3 3 72 3L 19251666 19251684 ACATGACATTCCTCATGGA 58 19251439 19251457 ACCACTTTGGTGTAGAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4174 FBgn0036793 FBtr0100567,FBtr0075111 3 2 3 256 3L 18594641 18594659 GACTCCTATGCCATGACTG 59 18594292 18594372 AAATAGTGACCAAGTCCCT 57 NA DesignRelaxed Drosophila melanogaster 50 CG32198 FBgn0052198 FBtr0075099 1 1 1 60 3L 18520143 18520161 CTTTGCTCTTGATGATCCC 58 18520185 18520203 CGAAGTTGGAGATGTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5147 FBgn0036775 FBtr0075136 2 1 1 81 3L 18101619 18101691 CAACACTTAAGGACACTTTGG 59 18101558 18101576 GGTTCCTCTAAACTGGCTG 59 NA Drosophila melanogaster 50 Adgf-B FBgn0036751 FBtr0075193 2 1 1 60 3L 17742693 17742711 TCCAAGCTGATATACGCTC 58 17742651 17742669 TCACATATTGCTCGACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scaf6 FBgn0053522 FBtr0091474 2 1 2 158 3L 17030931 17030954 GGTCTCTATGAGTACTATAAGGTG 59 17030725 17030816 ACTCTTGGATCGATAAACTCG 59 NA Drosophila melanogaster 50 CG13029 FBgn0036670 FBtr0075335,FBtr0075336 3 2 2 63 3L 16853877 16853895 AGTGGGATTCGTTCTAGTG 58 16853919 16853940 GGGCAACATATAGAACATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sina FBgn0003410 FBtr0075332,FBtr0075333 1 2 2 88 3L 16850362 16850380 CAATTCACAACTCGGACTG 58 16850432 16850450 TATGGTCACGTTAATGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dbp73D FBgn0004556 FBtr0075347 3 1 1 176 3L 16722956 16722974 ATACTACTCCAAGGCAGAC 58 16722738 16722756 TCCTTTACATGACTGTCCA 57 NA DesignNoJunction Drosophila melanogaster 50 CG13036 FBgn0036626 FBtr0075416 2 1 1 73 3L 16384410 16384429 ATTATGGTGGCAATATGCCT 59 16384356 16384374 TCAGATTCGGATTCCAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdh FBgn0011693 FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536 3 4 4 131 3L 16346821 16346839 ATCATTCCCGTTTACGGAG 59 16346644 16346662 CATGTCCGTCATTGTAGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG4998 FBgn0036612 FBtr0075377 2 1 2 148 3L 16335188 16335206 AATGCTACCACTACTGCTG 59 16336895 16336913 CGGTTTCCATAATAGGCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13046 FBgn0036595 FBtr0075473 2 1 1 60 3L 16281275 16281294 GTCTCACACCTGGATTACTC 59 16281234 16281253 CGGGATAGTGATAGTAACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33985 FBgn0053985 FBtr0100030 2 1 1 60 3L 15519090 15519109 CTTTCTTCTACGGATGGGAC 59 15519049 15519067 CATTTGGCTTGACCTAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7945 FBgn0036505 FBtr0075599 3 1 3 122 3L 15516678 15516696 ATATAGAAGCCGATACGCC 58 15515586 15515662 CCAGTATGGTGACAAATCTC 57 NA Drosophila melanogaster 50 CG7841 FBgn0036502 FBtr0075604 3 1 1 88 3L 15499244 15499342 CGTTACATAAATGACTCCTGG 58 15499176 15499194 GCTACAGGTTTCTCAACAG 58 NA Nonspecific Drosophila melanogaster 50 CG13477 FBgn0036438 FBtr0075685 2 1 1 64 3L 14684761 14684779 CTCGAATTCCATCCGTACC 59 14684807 14684825 CATTGGATTATCGCCTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34039 FBgn0054039 FBtr0100094 1 1 1 173 3L 14555243 14555263 GCTATAGCTGTAGTGAAAGCA 59 14555491 14555509 TAGATATGTCTCGGACGCT 59 NA DesignNoJunction Drosophila melanogaster 50 stwl FBgn0003459 FBtr0075728 3 1 1 60 3L 14398367 14398386 CTAATATACCCACAACCACC 57 14398326 14398345 TGGGTTATACTCTTTCCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100042,FBtr0100039,FBtr0100040 1 3 6 60 3L 14206287 14223279 ATGACTACGATTATAGGCTGG 58 14223301 14223319 TGTGTATCTGACAGATCGT 57 NA DesignRelaxed Drosophila melanogaster 50 Rgl FBgn0026376 FBtr0075796,FBtr0075794,FBtr0075793,FBtr0075795 2 4 4 102 3L 13902205 13902224 AAACTTTAGTTCGCTCAAGG 58 13902061 13902142 GACTTCCATCCTTTCTTTAGG 58 NA Drosophila melanogaster 50 CG10638 FBgn0036290 FBtr0089322 2 1 2 93 3L 12494037 12494056 TGAAGGCATTATAGGCAAGG 59 12493889 12493981 TATGTCCCACAGCTTTGTG 59 NA Drosophila melanogaster 50 Adk1 FBgn0022709 FBtr0076018,FBtr0076017 2 2 2 122 3L 12193731 12193822 AAACCCTTACGATCAATGC 58 12193627 12193646 TAGCATTCTACTAGCACTGG 58 NA InUTR Drosophila melanogaster 50 l(3)j2D3 FBgn0011335 FBtr0075991 1 1 1 80 3L 12110258 12110352 CGCGAAAGTATAGAATAGAAGC 59 12110390 12110411 CTTGAAGCTTATGAAAGTGCTC 59 NA Drosophila melanogaster 50 TfIIEalpha FBgn0015828 FBtr0076108 2 1 1 95 3L 11676422 11676440 TATGAAGGGTATGCGAGTG 58 11676499 11676585 TCGACATCAGGAATCTTGG 59 NA Drosophila melanogaster 50 CG7557 FBgn0036159 FBtr0076175 1 1 2 75 3L 11438751 11438769 CAGGAGACTTGTATGTGCA 59 11438871 11438889 TATCGAAAGATCCGTTCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG8003 FBgn0036096 FBtr0076260 1 1 1 272 3L 10655695 10655713 ATGCCATCAATGGGATGAG 59 10656009 10656027 ATTACGCAGTCAGTTTGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG16719 FBgn0036029 FBtr0076394 1 1 1 60 3L 9678958 9678977 TACATCAATTCCATTGCCGA 59 9678999 9679018 CATTCTTGAGGGCAATTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Klp67A FBgn0004379 FBtr0076499 1 1 1 158 3L 9356597 9356615 TAGCAGCAGTACTTCTAGC 58 9356311 9356475 TTCGACTTGAGTAGAGCCT 59 NA DesignRelaxed Drosophila melanogaster 50 Dhpr FBgn0035964 FBtr0100531,FBtr0100532,FBtr0076531 1 3 3 88 3L 9128543 9128561 ATGAACCGTAAATGGATGC 58 9128613 9128631 TCTTGGGTCCACTTAAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7927 FBgn0027549 FBtr0076684 1 1 1 148 3L 8105677 8105696 ACATTAACAACCTAGCTGCA 59 8105807 8106122 CAAACCAGCTTCTTCTCCT 59 NA Drosophila melanogaster 50 CG8044 FBgn0035829 FBtr0076765,FBtr0076764 2 2 2 60 3L 7968872 7968891 GTTCCATCATGAATTCCGAC 58 7968757 7968777 GTCAGATTAGACTCCTGATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8562 FBgn0035779 FBtr0076854 3 1 1 119 3L 7392438 7392456 TATCTGCTGTATCCATGGG 58 7392599 7392617 ATAGGTGTACACCGTACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG32387 FBgn0052387 FBtr0076920,FBtr0110848 2 2 3 94 3L 7157941 7158035 CTACAGACACAAGCAAAGTC 58 7157866 7157884 GAATGGTGGCATAATACCG 58 NA Drosophila melanogaster 50 Cpr65Eb FBgn0035736 FBtr0076928 3 1 1 85 3L 7081581 7081599 ATTACCAGTTCGAGACGTC 59 7081514 7081532 GTAGTACTGTGATGAGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sse FBgn0035627 FBtr0077125 3 1 1 120 3L 5653532 5653608 GGATTGCTTTGTATACGCAG 59 5653431 5653449 CAACATGCGTGTAGAATCG 59 NA Drosophila melanogaster 50 Sras FBgn0029121 FBtr0077083 3 1 1 60 3L 5557643 5557661 CACTGCCCTATTGATTGGA 59 5557684 5557703 CGAATAGAAGCCAAATAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32244 FBgn0052244 FBtr0073325,FBtr0073324 3 2 2 104 3L 4505470 4505488 TGCTATCTTCTCAACAGCG 59 4505293 4505402 CAAACATCATGCGAACCTG 59 NA Drosophila melanogaster 50 CG11347 FBgn0035542 FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141 1 6 6 225 3L 4419447 4419465 TATTAGGTCCACCCAGGAG 59 4419654 4419748 GTTCTTGCTCTTCTGACTC 57 NA DesignRelaxed Drosophila melanogaster 50 CG32240 FBgn0052240 FBtr0073336 3 1 1 173 3L 4381223 4381241 GAAGAACTGAATCAGTGCG 58 4381005 4381024 TGTGTTCTATAAAGGGTCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG1268 FBgn0035521 FBtr0113137,FBtr0073230,FBtr0113136 3 3 3 98 3L 4262902 4262920 CTCACCAGAATCTGATCCG 59 4262981 4263000 CGATCAAGGGATTCATTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1265 FBgn0035517 FBtr0073228 3 1 1 83 3L 4255722 4255812 CAAACATGACTCGAATCTACAC 59 4255855 4255874 TAAGGAACGTCGAAATCAGG 59 NA Drosophila melanogaster 50 enc FBgn0004875 FBtr0112845 1 1 4 81 3L 3834558 3834576 TTTCGAATGTGCCAATTGG 59 3834621 3836033 TGGTAAATGGAACCGTCTG 59 NA Nonspecific Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133 2 5 11 192 3L 3578467 3593333 TTGCAGATATGGAGACTGG 58 3593487 3593507 CTGTTTGTTCAGAAAGACCTC 59 NA Drosophila melanogaster 50 CG12009 FBgn0035430 FBtr0073053 1 1 1 70 3L 3296308 3296385 TCAGTCAGGAATCGTTCAC 59 3296419 3296437 GTATCTGGAGCTATCCTCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG32271 FBgn0052271 FBtr0073105 1 1 1 62 3L 3202674 3202692 CAAAGTGTCCACCATTGAG 58 3202630 3202648 GAGACCTTGATCAGATCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 prominin-like FBgn0026189 FBtr0073120,FBtr0073119,FBtr0073118 1 3 3 80 3L 3119960 3120042 CTTGATCAATTAACCCACGC 59 3119899 3119920 CATTTCTGCCAAGGAATTACTC 59 NA Drosophila melanogaster 50 FR FBgn0035385 FBtr0072980 3 1 1 60 3L 3009876 3009895 CTCCAATCTACTGATCACCA 58 3009916 3009936 GCCGAAGATGATGTAAATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9977 FBgn0035371 FBtr0073016 1 1 1 140 3L 2770144 2770162 CAAGGAATCCATCCTGGAC 59 2769958 2769976 GTGATGTACACAATGCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 msn FBgn0010909 FBtr0072956 1 1 5 127 3L 2562835 2563827 CATGAAGCGCAAACTAGAG 58 2562726 2562744 AACGATCAAAGTCCCAGTC 59 NA Drosophila melanogaster 50 CG8960 FBgn0035315 FBtr0072872,FBtr0072871 3 2 2 205 3L 2197596 2197614 GATGATCTACTTGATGCGC 58 2197783 2197801 AGATCTGGTAGTGACCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dre4 FBgn0002183 FBtr0072864,FBtr0072865 2 2 2 81 3L 1873975 1874052 TGTCAAGGAAGTTACATACCG 59 1873914 1873933 AGCATTGTTTAGATTTGCGG 59 NA Drosophila melanogaster 50 CG12025 FBgn0035285 FBtr0072834 2 1 1 60 3L 1867416 1867434 ATCACGTCGTGTACATCTG 59 1867458 1867476 AGGTGATAGAAGTCGAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myo61F FBgn0010246 FBtr0072675,FBtr0072673,FBtr0072672,FBtr0072674 3 4 4 85 3L 1326066 1326084 TCCTCGAGAACTACCAGAG 59 1326130 1326212 GCCAATGTAGGTATAGATCAGG 59 NA Drosophila melanogaster 50 CG13887 FBgn0035165 FBtr0072583,FBtr0072584 1 2 2 60 3L 838422 838440 TCTACATCTCTGGATTCGC 58 838464 838482 ATCAAGTTTACCAGTCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Reg-2 FBgn0016715 FBtr0072561 3 1 1 144 3L 606252 606270 CGATTATCCCAACTTTGGG 58 605661 605679 CTCAATTAGGTGGTTGGAG 57 NA DesignNoJunction Drosophila melanogaster 50 fwd FBgn0004373 FBtr0072516,FBtr0072515,FBtr0072517 3 3 3 81 3L 307028 307046 AAGAACTTCGTCCAAAGCT 59 306901 306984 GAATGTTGCCATTATGCCTG 59 NA Drosophila melanogaster 50 mthl14 FBgn0052476 FBtr0072501 1 1 1 141 3L 249213 249231 CAATGCTCAAAGAGTTGGG 59 249336 249412 ATTCAGTTAGGCCTTGCAG 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-841b FBgn0083018 FBtr0113520 1 1 1 87 2R 17217783 17217801 CAAATGCACTCTGTGTCAC 59 17217851 17217870 GCATGGATAAGTCACATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gol FBgn0004919 FBtr0072459 3 1 2 65 2R 20962765 20962786 CCTGAAGTTCTATGGATATGTG 58 20961069 20961088 GGATCAGGCTGATATTCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Tina-1 FBgn0035083 FBtr0072411 1 1 2 86 2R 20828650 20828668 TATGAACATTGGCGTTGGA 59 20828515 20828533 TAGCGCAGACTAAGTAGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG30165 FBgn0050165 FBtr0072361 1 1 1 90 2R 20304261 20304279 ATAACCAGTCCAGTGTCAG 58 20304090 20304207 TCACTGCTAGCTAACTTGG 58 NA Drosophila melanogaster 50 alpha-catenin-related FBgn0029105 FBtr0072148 3 1 1 91 2R 19847526 19847544 AACGAGATCTCCATGATCG 58 19847599 19847675 GAGCTTTCGCATTTCTCAG 59 NA Nonspecific Drosophila melanogaster 50 apt FBgn0015903 FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067 3 5 5 85 2R 19484451 19484469 TTTATGAAGATTGCCGCCA 59 19484517 19484598 ATGTACTGTGTCATTTCCGT 59 NA Drosophila melanogaster 50 CG17280 FBgn0034877 FBtr0072061 2 1 1 223 2R 19435823 19435841 TTCTAAACCACGCAATTCG 58 19436179 19436197 CAGGTAGTCGTACTTGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30415 FBgn0050415 FBtr0072030 3 1 2 107 2R 19273641 19273659 CTACAAGATCAGCAAGCTG 58 19273481 19273499 AAGACTAAGTTACTGGCCG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG3493 FBgn0034854 FBtr0072036 3 1 1 129 2R 19259693 19259777 GATGAAACCCTGGTATCCA 58 19259517 19259535 ATATCACCTTGACAAGCGT 58 NA Drosophila melanogaster 50 CG30259 FBgn0050259 FBtr0113365 1 1 2 60 2R 18591477 18591495 GGATATGTACGCCAATCTG 57 18591435 18591453 CGTACCAACTATCCTGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2852 FBgn0034753 FBtr0071933 3 1 2 161 2R 18533527 18533545 CTTTGACATCACCATTGGC 59 18532998 18533016 ATGAAGTCCTTGATGATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4294 FBgn0034742 FBtr0071941 2 1 1 80 2R 18489502 18489521 GCAGAAACGACATAAACTCC 59 18489309 18489460 TCGTCGATTAACCTGTAGTC 58 NA Drosophila melanogaster 50 wdp FBgn0034718 FBtr0071849,FBtr0071852,FBtr0071851 2 3 4 132 2R 18188505 18195724 GTCTTATAGAAGATAAGACGCC 57 18188394 18188412 AACCACAATGAGGAACAGG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 GM130 FBgn0034697 FBtr0071789,FBtr0071790 3 2 2 131 2R 18013744 18013763 TTAAAGAGGCCAGTCAAGTG 59 18013577 18013595 TCTTCAGCTGGAATTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6613 FBgn0034694 FBtr0071758 2 1 1 95 2R 17993067 17993156 CACCACATTCAGATGTCTG 58 17993215 17993233 CGCTTACGTATTCGTTCAC 58 NA Drosophila melanogaster 50 Gr58a FBgn0041239 FBtr0071728 2 1 1 60 2R 17867416 17867434 GCTCCTCTGAAGAAAGGAC 59 17867455 17867476 TATAGATGAGGTACCATCTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sdc FBgn0010415 FBtr0071707,FBtr0071706,FBtr0071705 1 3 3 142 2R 17299915 17367605 TCAAGATCAGAAATCGGTG 57 17286794 17286815 GATCTTTCTCTAGATCTTCGTG 57 NA Drosophila melanogaster 50 CG18375 FBgn0034606 FBtr0071622,FBtr0071623 3 2 2 107 2R 17109401 17109419 TGAATATCCTGACAGCAGC 59 17109240 17109330 ACTGATTGCGGTACATCAG 59 NA Drosophila melanogaster 50 tud FBgn0003891 FBtr0071582 3 1 1 89 2R 17072517 17072591 GGTCAATGTGACAAATGTACAG 59 17072638 17072659 GCACGATTATAAGGATTTGTCG 59 NA Drosophila melanogaster 50 bl FBgn0015907 FBtr0086221,FBtr0086220 1 2 4 90 2R 16483146 16483164 TTCGCATACTGATTCCGAG 59 16483311 16485063 GTGGCTTTATACTGAGTCCT 58 NA Drosophila melanogaster 50 bl FBgn0015907 FBtr0086219,FBtr0086221,FBtr0086220,FBtr0086222 1 4 4 66 2R 16493081 16493099 GTCATGATCCCAACAACAG 58 16493191 16493209 TTACCAATGATGGCACCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13424 FBgn0034520 FBtr0086218 1 1 1 196 2R 16445732 16445907 GAAACGCAGATCAAGATCTG 59 16446066 16446084 ATAATGGACTGAATGGGCG 59 NA Drosophila melanogaster 50 CG11041 FBgn0034481 FBtr0086310 3 1 1 70 2R 16034203 16034580 TGAATCAGCTCATGGTAGC 59 16034614 16034632 CATATCCGAAACCAAAGCC 58 NA DesignRelaxed Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457 2 11 15 113 2R 15365201 15366256 TTCACTCTGGTCAAACCAG 59 15366332 15366351 AGAGTTTGGAGAAGAAGCTC 59 NA Drosophila melanogaster 50 Cyp12b2 FBgn0034387 FBtr0086609 1 1 1 83 2R 14643158 14643177 GAGCTTGAACTACTATCGCA 59 14643223 14643299 CATTCCTGACCCTGATCAG 59 NA Drosophila melanogaster 50 IM3 FBgn0040736 FBtr0086665 3 1 1 214 2R 14275692 14275710 GAAATTCCTATCACTCGCC 57 14275959 14275977 ATGGGCACTTGATTCTAGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4975 FBgn0034266 FBtr0086861 2 1 1 60 2R 13614841 13614859 TTCGAATAATGTGCTCCTC 57 13614883 13614901 GATAAGACCATGACCACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6424 FBgn0028494 FBtr0086887,FBtr0086886 3 2 2 122 2R 13592686 13593867 ATCGAGCAGAATTTGAACG 58 13592582 13592600 CTCAAAGTACAGCAGTCCA 59 NA Drosophila melanogaster 50 CG14479 FBgn0034228 FBtr0086952 2 1 1 68 2R 13390036 13390054 TTCCAGTTTCCTCTTCCAG 58 13389986 13390004 CATCAGTGTCTGTTTAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30460 FBgn0050460 FBtr0087011,FBtr0087012,FBtr0087009,FBtr0087010,FBtr0113378 2 5 5 109 2R 12955106 12955124 AGTTAAGCAGTCTCGATGG 59 12954944 12955033 ATAAGGTGAGTTGCTGCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 RhoGEF2 FBgn0023172 FBtr0086970,FBtr0086971,FBtr0086969 3 3 3 81 2R 12929165 12929184 GATCAAGAAGAATCCTAGCG 57 12929228 12929313 TTTATCATCCTGCTTGGTC 57 NA Drosophila melanogaster 50 CG30463 FBgn0050463 FBtr0113379,FBtr0113381,FBtr0087113 3 3 5 163 2R 12566519 12566537 CAACATTTATCCCGAGCTC 58 12562744 12565924 GCATCCAGTACTGATTTCC 57 NA Drosophila melanogaster 50 sli FBgn0003425 FBtr0087304,FBtr0087302,FBtr0112831 1 3 5 137 2R 11773781 11773799 GACCGTGATATACGAGACG 59 11772979 11773607 TTGTTGGAGATGTCCAGTC 59 NA Drosophila melanogaster 50 fus FBgn0023441 FBtr0087347,FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087348,FBtr0087343 2 6 6 60 2R 11550737 11550758 CCATATGGTTATCAATGCACAG 59 11550637 11550656 CAAGTCCATCTGGATAAAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG34442 FBgn0085471 FBtr0112746 1 1 1 84 2R 10254944 10255018 TTAAGAAGGTCAGGGTTTCC 59 10255063 10255083 CATTAACTTCACCCAGTTGTG 59 NA Drosophila melanogaster 50 pea FBgn0086895 FBtr0087518 1 1 1 60 2R 10041689 10041708 AGGCTTAGTACACATCTCAC 58 10041731 10041749 TACCTCCGTTACATCTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18371 FBgn0033893 FBtr0087599 1 1 1 69 2R 9916438 9916456 TACTGAATATCGGCAGTCC 58 9916489 9916507 GAAGTGATCTCCTTGGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mip120 FBgn0033846 FBtr0087669 2 1 1 276 2R 9399927 9400012 TATGTAAATGCGTTGGGTG 58 9400252 9400270 ATCTGTGTCAGACTTTCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13326 FBgn0033794 FBtr0087779 1 1 1 131 2R 9017613 9017686 AATCAGACACTAGCGATGC 59 9017500 9017518 AAGATTCTCGCTCATCACG 59 NA Drosophila melanogaster 50 nemy FBgn0033765 FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875 3 6 6 197 2R 8558847 8559072 AAGCGGATGAGGAAATCTG 59 8558668 8558689 GATCTCTGTACGCTTATAGTCC 59 NA InUTR Drosophila melanogaster 50 Iswi FBgn0011604 FBtr0087842,FBtr0087841,FBtr0087843 1 3 3 92 2R 8527488 8527567 GCTATAAGAGCTTCTCCGC 59 8527623 8527641 GGTAATCAACGTGTTGCAG 59 NA Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087832,FBtr0087836 2 2 8 102 2R 8505632 8505713 TCCTGAATACGATGGTCCA 59 8505779 8505797 CGAATAGCATTGACGTTCG 59 NA Drosophila melanogaster 50 CG30334 FBgn0050334 FBtr0087949 2 1 1 279 2R 8328587 8328605 TCTACATTGGACCCTATCC 57 8328326 8328344 TACGGAAATTGATAGCACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8858 FBgn0033698 FBtr0088008 3 1 1 125 2R 8083933 8084004 GCCAAGAGAAGTGAATCCA 59 8083826 8083847 CTCCGATACATCTTTCAAAGTG 59 NA Drosophila melanogaster 50 CG13188 FBgn0033668 FBtr0088039,FBtr0088040 2 2 2 81 2R 7837687 7843102 TATACAAGGAGCACATTCAGG 59 7843145 7843163 TCGAAGACGATCACTTTGG 59 NA Drosophila melanogaster 50 CG33472 FBgn0053472 FBtr0114575,FBtr0089862 1 2 2 85 2R 7332258 7333648 ATTAACAGCCGTTATCGGA 58 7334662 7334681 CATAGCAGTAAATCGATCGC 58 NA Drosophila melanogaster 50 deltaTry FBgn0010358 FBtr0088124 1 1 1 62 2R 7243137 7243155 CTCCTTCAAGAACCACGAG 59 7243181 7243199 TTGATGATGGCAATGTCGT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1625 FBgn0033447 FBtr0088491 1 1 1 83 2R 5712621 5712704 GATAAGTACAAGGACATCCTGG 59 5712559 5712577 TATGGAACGACGTGTTTCC 59 NA Drosophila melanogaster 50 CG34033 FBgn0054033 FBtr0100088 2 1 1 61 2R 5708092 5708110 ATGCTTTACTGTCTTCCCA 58 5708135 5708153 TTACCGTTTGCCTCATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1902 FBgn0033434 FBtr0088532,FBtr0088531 1 2 2 77 2R 5492088 5492106 TTCGGAATGTCATGAAGCA 59 5492205 5492223 CCAATCCAATTGCCTTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1968 FBgn0033401 FBtr0088595,FBtr0088596 1 2 2 210 2R 5175120 5175194 CGGTGCTATTCAAATACGTC 59 5175367 5175385 AGCAAAGATAGGTTCTCCT 57 NA DesignRelaxed Drosophila melanogaster 50 Pkn FBgn0020621 FBtr0088602,FBtr0088601 2 2 6 81 2R 5155478 5171347 GATTCGTATTATCAGGGCG 57 5155415 5155433 GCAGATTCTCTGTGAAACC 58 NA Drosophila melanogaster 50 CG30345 FBgn0050345 FBtr0088584 1 1 1 82 2R 5037269 5037288 CATAGTAAGCCTCTTCCTGG 59 5037333 5037417 AAAGGTAGCCTGTAAACGT 58 NA Drosophila melanogaster 50 CG8172 FBgn0033362 FBtr0113058,FBtr0088667,FBtr0113057 1 3 3 118 2R 4895842 4895860 AATCGATGGGTGATAACGG 59 4895674 4895692 TACTCTTCGTGGTTTAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30356 FBgn0050356 FBtr0088717 3 1 1 61 2R 4616877 4616895 GGACATTCGATGCTAAAGC 58 4616834 4616852 AGAAACTGAAAGAACGGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8713 FBgn0033257 FBtr0088780 2 1 1 88 2R 3983738 3983817 GTTATGGTCGGGTATATCCT 58 3983868 3983886 ATAAGGCAGAAGTAGCTCC 58 NA Drosophila melanogaster 50 scra FBgn0004243 FBtr0088911,FBtr0088912 3 2 3 191 2R 3480687 3480705 ATCCTGCCTCTATTTGCAC 59 3480860 3480935 TGGAATTGGAGCTGTTAGC 59 NA Drosophila melanogaster 50 CG2144 FBgn0033187 FBtr0088904 2 1 1 80 2R 3408122 3408199 ATCGGAGTGATTACTACACC 58 3408242 3408260 CATCGCCTTCTCTTAAAGG 57 NA Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995 1 9 9 157 2R 3355133 3355208 AGAAGTTGTCATCAGCTCG 59 3354994 3355012 GTAGTAGTTGGTCAGCACC 59 NA Nonspecific Drosophila melanogaster 50 Tsp42Ek FBgn0033133 FBtr0089031 3 1 1 101 2R 2931521 2931541 AATACATAGAGAAGTTCGCCG 59 2931604 2931723 AACACTCGTACACTGTCTG 59 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086202,FBtr0086199 3 2 11 88 2R 2763928 2764041 CAATTCACAGGACTCAACC 58 2763858 2763877 CGAGTAACATTGTGGATTGG 58 NA InUTR Drosophila melanogaster 50 Cyp6a2 FBgn0000473 FBtr0086133 1 1 1 64 2R 2667460 2667478 GTTTGGCTCAGATCATCAG 58 2667414 2667432 CTTCAGTGGGATCTCTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 phtf FBgn0028579 FBtr0086125 1 1 1 80 2R 2630262 2630352 AAATAGTTGCATGGTACCAG 57 2630395 2630413 CCAATATCCTCTGTTCGAC 57 NA Drosophila melanogaster 50 Bap170 FBgn0042085 FBtr0086107 3 1 1 76 2R 2528471 2528489 ACAGAAGATAACCATGCCG 59 2528825 2528844 TTACAGTTGGTGAAACTGGA 59 NA DesignNoJunction Drosophila melanogaster 50 Act42A FBgn0000043 FBtr0086029 2 1 1 60 2R 1902663 1902681 TATCGTGACTAACTGGGAC 58 1902621 1902639 AAGCTCGTTGTAGAAAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3107 FBgn0033005 FBtr0086078,FBtr0086077 2 2 3 125 2R 979865 979885 GGTAGCGACATTTATGAATGC 59 979972 980040 AGGTTTGGTCTGAATACGG 59 NA Drosophila melanogaster 50 CG17715 FBgn0041004 FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246 2 6 6 98 2L 22742091 22742164 ATAATGATCATGGCGGGTG 59 22742226 22742244 ATCGCTTATGGTGTTTCCT 58 NA Drosophila melanogaster 50 CG17018 FBgn0039972 FBtr0085958 3 1 3 106 2L 22354958 22363437 GAATTATCCTGAATGCTGGC 59 22363506 22363524 GCGATAATGTCGATAGCTG 58 NA Drosophila melanogaster 50 CG6448 FBgn0032976 FBtr0113044,FBtr0085939,FBtr0113046,FBtr0085938 3 4 5 86 2L 22140896 22140914 GAGCATTTAGATCTTGCCG 58 22140962 22141605 GTAAACAGCATCTTGATCCTG 59 NA Drosophila melanogaster 50 Hr39 FBgn0010229 FBtr0081481,FBtr0081480,FBtr0081479,FBtr0081478 3 4 4 107 2L 21255223 21255241 TAGTTTGGCAGGAACTTCG 59 21255310 21255554 TCTACATCCATGATTTCCTGC 59 NA Drosophila melanogaster 50 CG31676 FBgn0051676 FBtr0081424 1 1 1 110 2L 20845512 20848558 GAAACTGGTGCAAGAAGTC 58 20848632 20848650 ATGTAGGACGATGTCTGGT 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 dia FBgn0011202 FBtr0081411,FBtr0081410 2 2 2 92 2L 20765980 20765998 AAGTTTAGCGAGGTGATGG 59 20766131 20766149 GTACAGCTTCTCCATTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17472 FBgn0032868 FBtr0081382 1 1 1 60 2L 20634582 20634601 CTTAGTATTGGCGAATCTGG 58 20634692 20634713 CCTTTCGTGTTCATCATATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS18B FBgn0032849 FBtr0081338 2 1 2 138 2L 20096894 20096912 GCTTACAAGCAAACCTACG 59 20096712 20096730 AAATGGGACAGGGATTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Catsup FBgn0002022 FBtr0081143 2 1 1 60 2L 19043009 19043029 ACCACTATCACTATTCTGCTG 59 19043051 19043069 TAAGAATGGCAAAGTCACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL30 FBgn0086710 FBtr0081181 2 1 2 107 2L 19009006 19009024 ACAAGCAGACCTTGAAGAC 59 19008512 19008530 CCAGCATAGCGTAGTACTC 59 NA DesignNoJunction Drosophila melanogaster 50 Fas3 FBgn0000636 FBtr0081051 3 1 4 110 2L 18391267 18391286 ACAAGGATAATCAGGAGTCG 58 18391359 18392077 GCCAAACTATAGCCTTTGG 58 NA Drosophila melanogaster 50 CG31785 FBgn0051785 FBtr0081044 2 1 1 111 2L 18124480 18124498 GTTCATATGTCCGGTAGCC 59 18124320 18124405 CATCATTTGTGTCTGTCGC 59 NA Drosophila melanogaster 50 Rpb11 FBgn0032634 FBtr0081011 1 1 1 83 2L 17409898 17409916 ATTCATGAACGCCATAACC 58 17409771 17409789 TCCTTCTTCTCCTTGATGG 58 NA DesignNoJunction Drosophila melanogaster 50 Ca-alpha1D FBgn0001991 FBtr0090004 2 1 4 89 2L 16181895 16182782 GAGTACAACTCTTTAAGGGCA 59 16182893 16182912 CATAGACCAGATAGGTTCCG 59 NA Drosophila melanogaster 50 mol FBgn0086711 FBtr0080676,FBtr0111014,FBtr0111015 2 3 5 98 2L 14992318 14992336 TTAGTCATCTTTCCGGGTG 58 14984074 14984205 CAGGCGAGTGATTAATATGAC 58 NA Drosophila melanogaster 50 CG33515 FBgn0053515 FBtr0091457 1 1 1 80 2L 14922994 14923014 GATGTTTACTTCGAGTGTCAC 58 14922083 14922955 CTCCAGATGAATACCATTATGC 58 NA Drosophila melanogaster 50 CG18420 FBgn0028866 FBtr0080687 2 1 1 80 2L 14796076 14796162 AATACCACAATCGTTGTTCG 58 14796015 14796033 GGTCCTATTCACTTGATGC 57 NA Drosophila melanogaster 50 Adhr FBgn0000056 FBtr0100187,FBtr0006151 1 2 2 80 2L 14617635 14618079 AATATAGCGAAACTGGCCA 59 14618123 14618141 GGTACTCGGCTTTATCGAC 59 NA Nonspecific Drosophila melanogaster 50 smi35A FBgn0016930 FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289 2 5 5 90 2L 14195795 14195814 CGGATGGATCTCATAATGTC 57 14189225 14195742 AGGTTCAAGCTCATTAGCT 58 NA Drosophila melanogaster 50 CG6734 FBgn0032395 FBtr0080312 1 1 1 72 2L 12014923 12015004 CACTACCAGCTCAAACCTC 59 12014869 12014887 TTGCATAGACCAGAGATGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Cry FBgn0005664 FBtr0080281 1 1 1 60 2L 11945128 11945148 GAGATGATAACAACGATGACG 58 11945170 11945188 TAATCCTCGTTGGAATTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mre11 FBgn0020270 FBtr0080213 2 1 1 60 2L 11284100 11284118 TGTGACAGTCAGTAGTACG 58 11284208 11284227 CATAAGGCTACTAAGGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG16833 FBgn0026147 FBtr0080152,FBtr0080150 2 2 3 83 2L 10990774 10991068 ATAACATACTCTCGGAACGC 59 10991114 10991132 CACGGTTGTAGAAGTACGA 59 NA Drosophila melanogaster 50 Stam FBgn0027363 FBtr0080143 3 1 1 251 2L 10859430 10859448 ACAAGGTAACGACCAATCC 59 10859722 10859740 TTTCAGCCCAGTTCTTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34161 FBgn0085190 FBtr0112352 3 1 1 176 2L 10581520 10581538 TTTAGTTGCCAATTCGAGG 58 10581193 10581269 CAGCCAGTATTTCATATCAGTC 58 NA Drosophila melanogaster 50 Trim9 FBgn0051721 FBtr0080096 1 1 1 83 2L 10620162 10620309 TCAGGATACTCAAGGACCA 59 10620356 10620374 GAGCTTCAATGCAGAACTG 59 NA Drosophila melanogaster 50 CG5676 FBgn0032200 FBtr0080086 1 1 1 80 2L 10255130 10255149 GATAAGAGCGTGGATAAGCT 59 10255006 10255088 TCTTTCGGTCTTATCCTTCC 58 NA Drosophila melanogaster 50 obst-B FBgn0027600 FBtr0079934 3 1 1 154 2L 10037272 10038228 CAAGCTACAAACACCTCAG 58 10038346 10038364 TCTTGGGATTGAAGACCAG 58 NA Drosophila melanogaster 50 CG31712 FBgn0051712 FBtr0079896 1 1 1 241 2L 9937422 9937440 AGACAATCGAAGAGGAAGC 59 9935531 9935549 AATTTCTTCGAGCTCTTCG 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG3759 FBgn0032116 FBtr0079807 1 1 1 80 2L 9420815 9420833 GTACTCTTAACAGCACTGC 58 9420875 9423309 GCAGATGGTATTATCATCTGC 58 NA Drosophila melanogaster 50 CG34398 FBgn0085427 FBtr0112648,FBtr0112649 1 2 2 85 2L 8927410 8927428 CATAGATAGTGCCGACGTC 59 8927477 8927560 TGGTGATTCCACTATCCCT 59 NA Drosophila melanogaster 50 d FBgn0086896 FBtr0079680,FBtr0079678,FBtr0079679 1 3 3 116 2L 8483309 8483327 TTTGACCTAAACGCATCCA 59 8483407 8483574 GCTGTGATTCTTCGATGTC 58 NA Drosophila melanogaster 50 CG17294 FBgn0032032 FBtr0079651 3 1 1 156 2L 8377782 8377853 ATGATTGGAGATGATGCCA 58 8377973 8377991 TAATCCAATCGACAGCCTC 59 NA Drosophila melanogaster 50 Pp2A-29B FBgn0005776 FBtr0005088,FBtr0100533 1 2 2 92 2L 8367166 8367184 AGTTGATTCCCTTCCTCAC 58 8367238 8367320 CAACGAGACTAGTAAAGTTGC 58 NA Drosophila melanogaster 50 CG7840 FBgn0032014 FBtr0079598 2 1 1 60 2L 8306313 8306331 AGCAAATACTCTACCTCGG 58 8306355 8306373 ATGTTACTGGCATACTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7367 FBgn0031976 FBtr0079547 1 1 1 78 2L 8028018 8028036 ATCAAGTTCGAGCTGTACG 59 8027884 8027905 GCGGAAACTCAAAGTTATTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14535 FBgn0031955 FBtr0079564 2 1 1 115 2L 7847852 7847870 CATATCCTTTGTGTCCAGC 58 7847615 7847633 GTTGGGAGGTGAAGATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7214 FBgn0031940 FBtr0079499 1 1 1 76 2L 7744200 7744218 GAACTCTGTAAGTCGGGAG 59 7744142 7744160 GTGATACTGCCATCCATCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 TepIII FBgn0041181 FBtr0079477 3 1 1 103 2L 7706843 7706926 AATGATAGACCCACTGTAAACC 59 7706990 7707008 AGTATAATATCGCCGCGAC 59 NA Drosophila melanogaster 50 SA FBgn0020616 FBtr0079349 3 1 1 83 2L 6953652 6953670 CTACTGCAAATTGGTGGTG 59 6953717 6953797 TCGTTGTAGCACTTAACGT 59 NA Drosophila melanogaster 50 CG10354 FBgn0031868 FBtr0079345 1 1 1 60 2L 6909273 6909292 AAGAAGTGCGTTTACAAGAC 58 6909314 6909333 GGTCAAGATTTACATCTCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11323 FBgn0031854 FBtr0079305 1 1 1 120 2L 6737673 6737692 AGAATTTCTATCCCTGGCTC 58 6737521 6737591 CGATCGATAACAACCTTGAC 58 NA Drosophila melanogaster 50 retm FBgn0031814 FBtr0079272 3 1 1 117 2L 6451704 6451723 ATCCAAGTTCCTGTTCTACG 59 6451003 6451624 GTGAATCATGGTCTTGCAC 59 NA Drosophila melanogaster 50 dsf FBgn0015381 FBtr0079145 2 1 1 275 2L 5928358 5936144 CATGAACAAGGATGCTGTG 59 5936383 5936401 TGCGTATAGTTGAACGAGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15634 FBgn0031621 FBtr0077378 2 1 1 60 2L 4688104 4688122 GAAGGGTAATCCTCTGGTG 59 4688145 4688164 GTAGGCATATAGGATGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tim FBgn0014396 FBtr0114526,FBtr0077564,FBtr0077565,FBtr0100349,FBtr0077567,FBtr0114527,FBtr0100350,FBtr0077566 2 8 8 81 2L 3503185 3503261 ATGAAGATGAGGACGAAGTG 59 3503123 3503144 GGTTGTTGTGTTAAGTTTAGGG 59 NA Drosophila melanogaster 50 lilli FBgn0041111 FBtr0077634,FBtr0077633,FBtr0077632 2 3 3 129 2L 2947320 2947338 AGAAGTCCTTTCTTGGTCC 58 2947431 2947622 TTGTTGACATCCTTCTCCG 59 NA Nonspecific Drosophila melanogaster 50 CG34314 FBgn0085343 FBtr0112512 2 1 1 60 2L 2574460 2574480 CTCCATCAATTTCTGAAGCAC 59 2574420 2574441 CCTCTTTCTTAAGGATCTTCTC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34174 FBgn0085203 FBtr0112365 3 1 1 103 2L 2214846 2214865 GATATGAGAAGGAGGCTCTG 59 2215057 2215078 GGGAAATTCCCATAAAGTTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Got2 FBgn0001125 FBtr0077868,FBtr0100359,FBtr0077867 1 3 3 255 2L 1986023 1986041 TTCAAGAAGGACACCAACC 59 1985662 1985680 CAGTTCCACTGATGGACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14346 FBgn0031337 FBtr0077926,FBtr0077927 1 2 2 173 2L 1368392 1368410 GGACACCGAGATTTACCTG 59 1368597 1368615 GTTAGCTCGATCACAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 smi21F FBgn0016926 FBtr0077988 3 1 2 208 2L 1118728 1118748 GGTTAATGTTAATGTCCAGGC 59 1117491 1117509 GATCGACATATTGGCTGCT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Pi3K21B FBgn0020622 FBtr0078132 2 1 1 89 2L 299872 299892 AAGCCGGAATTACAGATACTG 59 302050 302068 CATCTTCAGATCGTCGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 3 7 8 167 2L 119224 119296 ATAATGCAGACTGATGTCCTG 59 119020 119038 TTGAGCCATGGTGTTTAGG 59 NA Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089428 1 1 10 153 2L 110848 110867 AGCACATTGGTTATGATGAC 58 111110 111917 GAAATCGAAACCTGGTCAC 58 NA Drosophila melanogaster 50 CR41506 FBgn0085789 FBtr0114242 3 1 1 109 YHet 338145 338235 TGCTAAACTACAACTCACCC 59 338307 338325 GTAAGTCCTTCTCACGAGC 59 NA Nonspecific Drosophila melanogaster 50 CG12576 FBgn0031190 FBtr0077366,FBtr0077365 1 2 2 62 X 21879091 21879109 TATATCCGGATCAACGCTG 59 21879047 21879065 TACTTGGTGGAGACTAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fliI FBgn0000709 FBtr0077192 3 1 1 110 X 21214577 21214596 ATTGTGTACGTGTGGATAGG 59 21214667 21214810 GTTGAGAATCTGTAAGCTCAC 58 NA Drosophila melanogaster 50 CG33487 FBgn0053487 FBtr0089464 2 1 1 70 X 20088975 20089075 TGATGGCCATAGTTGAGTG 59 20088923 20088941 ATTCATGGCCTTGTACAGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Pros28.1 FBgn0004066 FBtr0074210 2 1 1 161 X 16170851 16170935 CATAACCAGATTCATTGCCC 58 16171059 16171077 GCGTTAGCCTTATACTCGT 59 NA Drosophila melanogaster 50 CG5347 FBgn0030578 FBtr0073936 1 1 1 60 X 14671177 14671195 TGTCCAGGATATTTGTCCA 57 14671219 14671237 TGGATACGAGCACTTACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32595 FBgn0052595 FBtr0073941 1 1 1 73 X 14612769 14612787 TATGTCCGATATCCATGCC 58 14612655 14612732 CATGGATGGATTCCAGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gd FBgn0000808 FBtr0073583 1 1 1 80 X 11880505 11880523 TCCCGACTTTAACAGTCAG 58 11880321 11880463 GTGTTAAATCGAACTTCGTCC 59 NA Drosophila melanogaster 50 CG11756 FBgn0030290 FBtr0073450 3 1 1 92 X 11242515 11242533 GCTACATCGTAAATGTGCC 58 11242589 11242607 GTTTGTTTACTGCGTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 btd FBgn0000233 FBtr0071379 1 1 1 113 X 9589440 9589898 GAAGTCAGTTTCCATATGCC 58 9589974 9589992 AACTCCATGGCTGATAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 APC7 FBgn0029879 FBtr0070947,FBtr0070946 1 2 2 61 X 6492972 6493060 TATTACAAGGCATTGCGTC 58 6493085 6493103 AATAAACGTAGTCCTCGCA 58 NA DesignNoJunction Drosophila melanogaster 50 Rpt4 FBgn0028685 FBtr0070929 1 1 1 89 X 6184929 6184947 GAGAACGATCTAAAGGCCC 59 6184795 6184879 GGCCTTCACAATGAATTTATCC 59 NA Drosophila melanogaster 50 Tre1 FBgn0046687 FBtr0070848 2 1 1 89 X 5568181 5568268 AATCGCAACTACAGAGTGG 59 5568110 5568129 ATAGTTTCTACTCGGCATCG 59 NA Drosophila melanogaster 50 CG7024 FBgn0029722 FBtr0070712 1 1 1 69 X 4599660 4599678 AGAAATATGCTCTGCAGGA 58 4599711 4600047 ACTTGAACGTGTTCTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34335 FBgn0085364 FBtr0112537 1 1 1 120 X 3440109 3440127 ACAGTGTATCAAGGGTTGG 59 3440007 3440025 GTCTCAACACATTGGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10793 FBgn0029656 FBtr0070536 2 1 1 60 X 3210168 3210186 ATGGATACTATGCGAGTGC 59 3210126 3210144 TCGTATTCGTCGGTTAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4199 FBgn0025628 FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333 2 4 6 110 X 1965424 1965442 CAAGGAGTACAAGACCACG 59 1962396 1962414 GACATGGTTGTACTGGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3719 FBgn0024986 FBtr0070233 2 1 1 80 X 1273394 1274177 TCAGAAGGTGATCAACAGC 59 1273332 1273350 GGCGTGAGTATCTTACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SP71 FBgn0029128 FBtr0100136,FBtr0100135 1 2 2 80 X 94412 94494 CTATGATGTTTCTGTTCACTGC 59 94535 94553 TAAATGCGTCCATTGAACG 58 NA Drosophila melanogaster 50 CR41590 FBgn0085807 FBtr0114261 1 1 1 60 U 7400302 7400320 TCTCGAATCTATGGGTGGT 59 7400344 7400362 AACCAGACAAATCACTCCA 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-2442b FBgn0082988 FBtr0113581 1 1 1 94 3R 1424239 1424257 CAACAACTCAATCGGTGTC 59 1424163 1424181 AATCTTTAGATTGCTGGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR33294 FBgn0053294 FBtr0113460 2 1 1 96 3R 21527 21602 AACAGTAATCAAACAGCTGG 58 21660 21679 ATATCTGACAGTAATGCGCA 59 NA Drosophila melanogaster 50 Map205 FBgn0002645 FBtr0085875 2 1 2 98 3R 27892129 27892147 ACATCTGGTTGAAGACACC 59 27884866 27892067 TTCTGTAGAGGAGCTTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1542 FBgn0039828 FBtr0085757 1 1 1 226 3R 27039468 27039544 GAACGATGTGACCAAACTG 59 27039734 27039752 GCATCTCCCTCTTGAAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9717 FBgn0039789 FBtr0085679 3 1 1 71 3R 26410832 26410850 GTCTTCATCCTCTACCAGG 58 26410588 26410798 TTTCAGACCAGTAGTTGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34299 FBgn0085328 FBtr0112495 2 1 1 103 3R 26075486 26075505 ATCAGTGGAAAGGAATCCAG 59 26075630 26075999 GGGTCTTCTAAATTGGATTTGC 59 NA Drosophila melanogaster 50 Mlc2 FBgn0002773 FBtr0089746 1 1 2 81 3R 25999049 25999130 TCCAACTCATGGATATCGC 59 25998986 25999004 AACTGGGTGAAGTTGATCG 59 NA Drosophila melanogaster 50 CG34298 FBgn0085327 FBtr0112494 1 1 1 60 3R 25825815 25825833 AGATAATGTTCCCAGCAGC 59 25825857 25825936 CATGTTGCTCACATTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12068 FBgn0039695 FBtr0085481 1 1 1 60 3R 25620713 25620731 CAGCTAAGGGACATACTGG 59 25620755 25620773 CATTGTTTATCAGTGCCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15506 FBgn0039686 FBtr0085456 2 1 2 76 3R 25547135 25547153 GATTGACGCCAAATGAGAG 58 25547402 25547421 TTCATATGGAGCATAGCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7582 FBgn0039681 FBtr0085464 2 1 1 112 3R 25506778 25506858 TCAAGAAGGAATACCGTCG 59 25506684 25506702 TCCAAAGGAGATCATTCCG 59 NA Drosophila melanogaster 50 CG18110 FBgn0039677 FBtr0085449 2 1 1 82 3R 25496357 25496375 GATGTGTACTTCCAGGAGG 59 25496419 25496497 CCATAGGAAACCATTAAGTCG 58 NA Drosophila melanogaster 50 ppk21 FBgn0039675 FBtr0085448 3 1 1 100 3R 25492256 25492332 AACTACTAGCTAGCTTTGGTG 59 25492394 25492412 CAAATAGAGGCCGATGGAG 59 NA Drosophila melanogaster 50 DopR2 FBgn0015129 FBtr0085467 1 1 2 237 3R 25484774 25484793 GAAATTCAATTTGGACCGCA 59 25467946 25467964 TTTCATGTCCTTCAGCAGG 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG11828 FBgn0039616 FBtr0085338 3 1 1 99 3R 24749510 24749529 TGAAGAGAAATTGGATCCTG 57 24749591 24749665 TGGTAAATCATGCATAGCG 57 NA Drosophila melanogaster 50 Apc FBgn0015589 FBtr0085351 3 1 1 207 3R 24662201 24662279 TACTGAGTCAGGCTATTGC 58 24662012 24662030 TTAGAATCGCTAGAGTCCA 57 NA DesignRelaxed Drosophila melanogaster 50 CG6283 FBgn0039474 FBtr0085151 2 1 1 64 3R 22846368 22846386 TCTTCAGCTACGATAAGCC 58 22846322 22846340 GATGGACTCTACGTAGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17192 FBgn0039472 FBtr0085153 2 1 1 89 3R 22843901 22843976 TATTAGTAGCGGGTAATGCC 59 22843831 22843849 ACTGAAATGTGCCATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31075 FBgn0051075 FBtr0085080 1 1 1 100 3R 22813029 22813047 ATGAGTTCGTTGATTCGGT 59 22812876 22812967 GATATCAGCCTTATCTCCCTC 58 NA Drosophila melanogaster 50 Lnk FBgn0028717 FBtr0084937,FBtr0084935,FBtr0084936 2 3 3 109 3R 21717659 21717678 ATGGCTACGATAATGGTCAG 59 21717750 21718182 CACTTCGTTGCAATGTCTC 59 NA Drosophila melanogaster 50 CG5107 FBgn0039342 FBtr0084879 2 1 1 60 3R 21331568 21331587 TGCCACCAATAAAGTTACAG 58 21331609 21331628 GATGCAGACATCAATGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11836 FBgn0039272 FBtr0113284,FBtr0084767,FBtr0084768 1 3 3 139 3R 20897386 20897466 AACTGTGACTGTGATTGTG 57 20897569 20897587 TTCGTCAGTAAGGATCCTC 58 NA InUTR Drosophila melanogaster 50 niki FBgn0045980 FBtr0084737 3 1 1 105 3R 20649804 20649878 AACAAAGGGTACTCCTATGAG 58 20649719 20649737 ATTCCAACTCCATGGACAC 59 NA Drosophila melanogaster 50 CG13627 FBgn0039217 FBtr0084686,FBtr0084687 2 2 2 101 3R 20541277 20541295 TTAAGTACGAGAAGCCCAC 59 20541470 20541488 TGTAAATGGGTGCAAAGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13616 FBgn0039200 FBtr0084618 1 1 1 169 3R 20219089 20219168 AACATGGGTTTCAATGGTC 58 20219301 20219319 TACTGATGATGGGCTTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6204 FBgn0039165 FBtr0084555 2 1 1 80 3R 20020755 20020834 AAAGGAGGATTGCCTAAGTG 59 20020877 20020895 TGGAACATGATCAGTGGTC 59 NA Drosophila melanogaster 50 Miro FBgn0039140 FBtr0084596 2 1 2 68 3R 19861354 19861372 AACTGTATACCAAGCTGGC 59 19861017 19861035 TGTAGAACAGTATCCAGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13830 FBgn0039054 FBtr0113272 1 1 1 87 3R 18907609 18907627 CAAGAAGCGTGAAATCTGC 59 18907430 18907561 TATCTCATCACGATTCTTGTGG 59 NA Drosophila melanogaster 50 sav FBgn0053193 FBtr0084356 3 1 1 127 3R 18884837 18884855 TTCAACATGTTTAGCCTGC 58 18884655 18884674 TTCTTCTCGAGTATCAAAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6985 FBgn0039017 FBtr0084308 3 1 1 98 3R 18568388 18568406 AGGAGTTGCAGTTCTATGG 58 18568467 18568545 CCGCTAGATTATTAGATGCG 58 NA Drosophila melanogaster 50 CG34376 FBgn0085405 FBtr0112608 1 1 2 214 3R 18283159 18283177 TTACTCCAAGAGCTTTGCC 59 18284198 18284216 ATATGATCCTGCCCAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13855 FBgn0038960 FBtr0084225 1 1 1 95 3R 18233913 18233987 TGAACTAAGATTACCGCGT 58 18234046 18234064 ATCTTGTAGTGATCTCGCG 59 NA Drosophila melanogaster 50 CG17267 FBgn0038821 FBtr0114503,FBtr0083931 1 2 2 63 3R 16564042 16564326 TTGGCTCCAGAAACTATCC 58 16563997 16564015 CTTCTGTATCCACCACGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TFAM FBgn0038805 FBtr0083949,FBtr0083948 2 2 2 61 3R 16401899 16401917 GAGAAGGAGGTCTACATGC 59 16401332 16401875 GAAATCGCTTTCCTGTAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5558 FBgn0038684 FBtr0083747 2 1 2 61 3R 14987533 14987553 GACTGCTAAATTCCATCAGAG 58 14986927 14986945 CACATATCGAGGATTGGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG32856 FBgn0052856 FBtr0083239 1 1 1 70 3R 11790837 11790855 ATCCAGAAGAAACTCGACC 58 11790731 11790803 AGCTCCTCTACCTTTAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rec FBgn0003227 FBtr0083193 1 1 1 125 3R 11656165 11656183 AAATCCGGTCCTAAACGAG 59 11650575 11656076 ATTATCGCAAGAAGTTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 btsz FBgn0053555 FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530 2 5 5 100 3R 10634158 10634176 ATAAGCTGAGTGCTTTGGA 58 10634011 10634096 TAGATACACCTTAACGTAGGG 58 NA Drosophila melanogaster 50 CG9918 FBgn0038201 FBtr0100131 2 1 1 92 3R 9926421 9926528 ATAATGCAGAATCCGACGA 58 9926347 9926367 GAGTGAGTTCGAGTTTATCAG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 mRpS21 FBgn0044511 FBtr0082764 3 1 1 118 3R 9207344 9207362 CTGTTAAATCGCGTCTTGG 59 9207185 9207204 TAAATGGCCTTGCATTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DDB1 FBgn0027049 FBtr0082709 1 1 1 81 3R 8881939 8881960 GATGGAGATCTAATTGAGAGCT 59 8882002 8882082 TCAGTGTCAACTCCAATCC 59 NA Drosophila melanogaster 50 CG11670 FBgn0038114 FBtr0113230,FBtr0113231 1 2 2 82 3R 8869501 8869519 AGTCGTAAACACTATCGCT 58 8869562 8869652 GTATAAACACCTGGAAGTTCAC 58 NA Drosophila melanogaster 50 Men FBgn0002719 FBtr0082660,FBtr0082661 2 2 2 178 3R 8539997 8540015 TCTTGGTATTGCCAACCTG 59 8539781 8539799 AAGTATCGATGGGTTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 scpr-C FBgn0037879 FBtr0082351 2 1 1 107 3R 7052001 7052019 AAGAACCGTTATGGAGCTG 59 7052090 7052108 ATTCCATGCCTACATCGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 fau FBgn0020439 FBtr0082308 2 1 4 64 3R 6599528 6599546 GTACAACTACAGCACAGAG 57 6599482 6599500 AAGAATAGCTGTAGCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5359 FBgn0037773 FBtr0082215 1 1 1 181 3R 5826083 5826305 ACTTTAATGGGTAGGCACC 59 5825920 5825938 AAGCCCATTCAGATCTCTG 59 NA InUTR Drosophila melanogaster 50 CG16749 FBgn0037678 FBtr0082057 2 1 1 178 3R 5157174 5157195 CTATGCCAACGATATTTCACTG 59 5156954 5156972 GTGTGGATTGGATGTATCC 57 NA DesignNoJunction Drosophila melanogaster 50 Vps16A FBgn0037674 FBtr0081979 3 1 1 81 3R 5094883 5094901 ATACAGAGTTGATCACCCA 57 5094945 5095032 TGGTCCCTAATAGTCATGTG 58 NA Drosophila melanogaster 50 CG34301 FBgn0085330 FBtr0112497 3 1 1 120 3R 4599195 4599213 CATACCTAAGCTCCATGGC 59 4599297 4599384 GAATTTGGTTTCTGGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Est3 FBgn0015571 FBtr0081545 3 1 1 103 3R 3365220 3365299 AAAGCGTACTGTGAGTACG 59 3365135 3365154 CGATAGAGGTATGTGGAAGC 59 NA Drosophila melanogaster 50 Ubc84D FBgn0017456 FBtr0081552 2 1 1 60 3R 3344908 3344926 GCATCGAAATCAACTTCCC 59 3344866 3344887 GTCTTGAATAGGATCTTTGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gfzf FBgn0053546 FBtr0114531,FBtr0091512 1 2 2 122 3R 2972596 2972675 TACTCGAAGATGAATCCGC 59 2972492 2972510 ATATAGCGTTGAATCCGGC 59 NA Drosophila melanogaster 50 Ccp84Ab FBgn0004782 FBtr0081692 3 1 1 211 3R 2528442 2528536 CTTCAAGTTTGTCTTCGCC 59 2528249 2528267 TTAGCTTGTCATCGACTCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Spase18-21 FBgn0026567 FBtr0081687 3 1 1 173 3R 2484888 2484967 TATCCCAAGGTTAAGTGGG 58 2485103 2485122 CACAATGGTCTTACTGTTGG 58 NA InUTR Drosophila melanogaster 50 CG2017 FBgn0037391 FBtr0078664,FBtr0114518,FBtr0078663,FBtr0078662,FBtr0078661 1 5 5 92 3R 1685467 1685485 TATGTTTAGGCACATGCAC 58 1685182 1685200 TTGACCACATTACCCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31554 FBgn0051554 FBtr0078637 1 1 1 150 3R 1642729 1642747 CTTAATGACTCCACTCGGG 59 1642861 1642879 ATTCGAAGTCGTACTGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113342 3 1 15 116 3R 110114 113797 TAAGTGCCGTTAAAGATGC 58 114829 114847 CGTAATCAAACGATTACGC 57 NA InUTR Drosophila melanogaster 50 CG41456 FBgn0084018 FBtr0111155 2 1 1 79 3L 24282386 24282405 GAAGAAGGAGATCATGAGTG 57 24282326 24282344 TTAGGATGTTACGAGGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ssl1 FBgn0037202 FBtr0078554 1 1 1 173 3L 22872872 22872890 GAAGGTGACCGAACTTACC 59 22873079 22873097 GAGCCCATGATAATGACGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG14457 FBgn0037174 FBtr0100669,FBtr0078517 3 2 2 128 3L 22672341 22672359 TTCTATCTCAACCGCATCC 59 22672448 22672530 CTTCTTAAATACCTGACTGTCC 58 NA Drosophila melanogaster 50 CG32441 FBgn0052441 FBtr0078375,FBtr0078376 3 2 2 225 3L 21567999 21568332 GGACTTGCTGAAGAAACTG 58 21568521 21568539 CTGGGTGCACTCTATAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG32440 FBgn0052440 FBtr0078345 1 1 1 69 3L 21353622 21354058 GGACACCAACGTCTATCAG 59 21354091 21354109 AAAGTACAGGACTGACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12974 FBgn0037065 FBtr0078410,FBtr0078411 1 2 2 126 3L 21276340 21276360 CATTTCCATGATGGTCATCTC 58 21275743 21276255 GAACAAAGTATCCACATTGTCC 59 NA Drosophila melanogaster 50 CG5976 FBgn0036999 FBtr0078199 3 1 2 61 3L 20467697 20467716 AAATCTACAATCTAGGCGCT 58 20467737 20468679 GGGATTGTAGGATATCTTAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11796 FBgn0036992 FBtr0078225 1 1 2 99 3L 20432557 20432642 GACAAAGGAACCAAACCTG 58 20432476 20432494 GAGTGGTATAGTAGCTGGC 58 NA Drosophila melanogaster 50 obst-F FBgn0036947 FBtr0074860 1 1 1 65 3L 20194443 20194588 GTCACCTCAGCCATATCTG 59 20194396 20194414 TACAATCCAACGGATGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18811 FBgn0042134 FBtr0075098 3 1 1 61 3L 18664518 18664592 AAGGATAACCTGGCAAAGAC 59 18664476 18664494 TGAATGATCAGAACCTCCC 58 NA DesignNoJunction Drosophila melanogaster 50 FucTA FBgn0036485 FBtr0075641 3 1 1 85 3L 15145210 15145228 GTACTATCTGGAGTGTCCG 58 15145277 15145480 TACTATCCCGTCTGTAGGT 58 NA Drosophila melanogaster 50 CG17177 FBgn0036440 FBtr0075710 2 1 1 81 3L 14692403 14692786 AATCGGGAGATAATTCACCG 59 14692341 14692359 CAGTGAACTCACCTTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fz FBgn0001085 FBtr0075743,FBtr0075742 2 2 2 141 3L 14268824 14298012 AAGGATCTGCATGACTGTG 59 14304961 14304979 CAATCAAGAAGGTGAGCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7906 FBgn0036417 FBtr0075741 3 1 1 168 3L 14231000 14231018 CATCACTGTCCATTTGTGC 59 14231211 14231230 ACAGCTTACATCATATCCCT 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Meics FBgn0025874 FBtr0075791 3 1 1 60 3L 13957404 13957424 CTCAAATCTGAGTAGATCCCA 58 13957364 13957383 CTCGAAGGGTATTAATGGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11267 FBgn0036334 FBtr0075875 2 1 1 274 3L 13009520 13009538 CTGACCAAGACGAAAGGAG 59 13009844 13009862 AATTGTGAGACAGTGTCCG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG34017 FBgn0054017 FBtr0100072 2 1 1 60 3L 12815436 12815455 TCATCCGACTATGATTTGAC 57 12815476 12815496 CTCCTTCCGAATCATATTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7264 FBgn0036214 FBtr0076035 3 1 1 83 3L 11822600 11822618 GGAGCAGTACGAAGATGAG 59 11822721 11822739 CGATCCAGCATTTCTAGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG32062 FBgn0052062 FBtr0113419,FBtr0113420,FBtr0113418 3 3 5 122 3L 10561593 10561611 CAGAATATTCAAGTGGCGG 58 10561696 10566559 ATACTGTGGACTTCTGTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6559 FBgn0036081 FBtr0076298 1 1 1 80 3L 10304964 10304984 CCAATATGCAGTAAATCTGCC 59 10303411 10304922 AAGTTTCCTTCAGTTGCGA 59 NA Drosophila melanogaster 50 Ard1 FBgn0036064 FBtr0076349,FBtr0076352,FBtr0076351,FBtr0076350,FBtr0076348 2 5 5 66 3L 9966736 9966754 CTGAACCTCTACACCAACG 59 9966784 9966802 CATCGGCATAGTACTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7942 FBgn0035838 FBtr0076686 2 1 2 118 3L 8115213 8115286 CAAATACTACAGTGGCGAG 57 8115368 8115386 AAATATTTGGAGCCACCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG8219 FBgn0035693 FBtr0077003 1 1 1 108 3L 6196135 6196153 AAATCTTTCGAGGAATGCG 58 6196280 6196363 CAATAACAAGCACCACTGG 59 NA Drosophila melanogaster 50 CG32416 FBgn0052416 FBtr0077110 3 1 1 63 3L 5796478 5796496 GCTACTGTGCAATATGCAC 59 5796523 5796541 GTTTCGGTTGATGCATACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Usp36 FBgn0035633 FBtr0077104,FBtr0077102,FBtr0077099 2 3 6 88 3L 5767630 5767648 AGATGTGGTCGTAATTGCA 59 5768334 5768352 CCATCTCGTTCTCTTCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Blimp-1 FBgn0035625 FBtr0077089 3 1 1 91 3L 5637720 5637842 GCCAAATGTTAAGACTGAAGG 59 5637894 5637913 AATTAGAGGTTGGAATGCCT 59 NA Drosophila melanogaster 50 dyl FBgn0066365 FBtr0073343 2 1 3 297 3L 4299067 4299085 ACTCGTATCAACTGACACC 59 4298554 4298572 GACTATGGCCATTAGGCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG11593 FBgn0035488 FBtr0114509 3 1 1 84 3L 4038742 4038822 GCTTAAACGGTGTTATCAGC 59 4038677 4038695 TATCCAGAATGTCGGATGC 59 NA Drosophila melanogaster 50 CG9004 FBgn0035336 FBtr0072890 3 1 1 64 3L 2374622 2374640 GAGAGGAAGAACAAAGCGA 59 2374666 2374739 GTCCTCTTTAATCTTAGGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13801 FBgn0035332 FBtr0072888 2 1 1 60 3L 2362077 2362095 GATATCAATTCTGTCCGCC 58 2362117 2362137 CTTGATGATATCCTTCTGGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aplip1 FBgn0040281 FBtr0072627 2 1 2 251 3L 1197306 1197520 CAAGAAATCTTCCATTCTGC 57 1197734 1197752 GACATGCTCTTAAAGTCGT 57 NA DesignRelaxed Drosophila melanogaster 50 klar FBgn0001316 FBtr0072565,FBtr0112808,FBtr0110818 3 3 4 80 3L 444370 444613 GAACAACAAGCAGAACTCAG 59 444309 444330 GTATTTCTCTTGGTAGTTGTCC 58 NA Drosophila melanogaster 50 CG30430 FBgn0050430 FBtr0072448 2 1 1 65 2R 21017163 21017181 CTACTACCCTTGCTGTAGC 59 21017210 21017228 CTATAGAATCCGCATCGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 key FBgn0041205 FBtr0072428 3 1 1 80 2R 20673807 20673827 GTATCTGAGAAACAGTCCCTG 59 20673604 20673768 GAACTCAAACGAGTGATTTAGC 59 NA Drosophila melanogaster 50 CG3419 FBgn0035002 FBtr0072292 3 1 2 90 2R 20301906 20301924 GCAGCCAAGACTTAAATCC 58 20302060 20302079 TTTGTTGGGAATTAAGTGCC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Or59a FBgn0026384 FBtr0072023 3 1 1 61 2R 19328186 19328204 CTATACGTGTTCATCGGCA 59 19328143 19328161 AACAGAAAGGATAGCTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 twi FBgn0003900 FBtr0100130,FBtr0071953 2 2 2 60 2R 18934042 18934060 CTGGACATAAGCTACAAGC 57 18934084 18934102 TGATCACATTGTTCTGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30196 FBgn0050196 FBtr0071927 2 1 1 93 2R 18542575 18542685 TCTGCTGTAATCCCATTCG 59 18542500 18542518 CTCAGAGTGATATCGCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tim10 FBgn0027360 FBtr0071676 2 1 2 239 2R 17578227 17578245 ATGCAGGAAATGGAGATCG 59 17577843 17577861 GGTGCCAGGTTAACTAGAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13423 FBgn0034513 FBtr0086217 1 1 1 61 2R 16424676 16424694 GAAATGCTACCTCCACTCC 59 16424717 16424798 GCTTACTCTTCAGTATGAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8920 FBgn0027529 FBtr0086281 3 1 3 101 2R 16211833 16211851 GGTAAACGTATTCATCCGC 58 16211916 16212020 ATGTCGTTGTTTAGGGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10822 FBgn0034478 FBtr0086339 2 1 1 81 2R 15839179 15839197 ATATGACAATTTGCGGGAG 57 15839242 15839260 ACGAACTCTCAGTAGAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mctp FBgn0034389 FBtr0110970,FBtr0110971 2 2 2 107 2R 14660396 14660473 TATGTCCAGAGCTGTTTCG 59 14660543 14660562 AACTAGAGGTACTGTCTCCA 58 NA Drosophila melanogaster 50 edl FBgn0023214 FBtr0086652 3 1 1 62 2R 14555462 14555480 GAACTGCCACAGAAATTCC 59 14555418 14555438 GTACATATCGAGACTCATCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18538 FBgn0034324 FBtr0086760 3 1 1 67 2R 14184839 14184912 CTGATGAAACCATGGTACG 58 14184943 14184961 TTGTAGTCGCTGACATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 olf186-F FBgn0041585 FBtr0086795 2 1 5 157 2R 13731906 13738566 CCAGCAGAAATACAGACGT 59 13738686 13738705 TGATCACTGCAGAACTTCTC 59 NA InUTR Drosophila melanogaster 50 CG34459 FBgn0085488 FBtr0112765 3 1 1 72 2R 12713706 12713724 GAAGTCCAGGAAGCTAGTG 59 12713760 12713778 CATTCATATTGGCCTCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30324 FBgn0050324 FBtr0087181 1 1 1 92 2R 12175248 12175266 AATTCTACGAGTTGCCAGG 59 12175174 12175192 TATTGGTACAGGGACAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30089 FBgn0050089 FBtr0087285 3 1 1 106 2R 11620382 11620400 ATGAGACTGAATCCAAGGC 59 11620470 11622610 GAATGGATCGCAATTCTGC 59 NA Drosophila melanogaster 50 fus FBgn0023441 FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343 3 4 6 111 2R 11555363 11559507 CAACTGGACAGATCGTAGG 59 11555270 11555289 GTGTTATTGGTGACACTCGA 59 NA Drosophila melanogaster 50 CG30470 FBgn0050470 FBtr0087326 1 1 1 60 2R 11348977 11348996 AGTACTGCATTTGATTCCCA 59 11349018 11349037 TACACAGAACACGGTAACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Adgf-E FBgn0033952 FBtr0087482 2 1 1 63 2R 10545202 10545220 GCAACCAGAATTAGTGGGA 59 10544990 10545177 GCTGGGAAACTCTTTATTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fas FBgn0000633 FBtr0087625 2 1 1 91 2R 9633833 9633916 CCTATGCGGTAAAGGATCTG 59 9633970 9633988 GTAGAAGGTCCTTGGAACC 59 NA Drosophila melanogaster 50 CG4688 FBgn0033817 FBtr0087744 3 1 1 78 2R 9127902 9127921 TTATCATGGAGCGTTACCTG 59 9128054 9128072 GTCACGATGGATAAGTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3884 FBgn0033786 FBtr0087799 2 1 2 60 2R 8838236 8838254 GATACGAATTCCAGAAGCC 57 8838194 8838215 TTCATCCATACATATCCGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8569 FBgn0033752 FBtr0087940 2 1 1 147 2R 8407928 8407946 GAGTTGGTATTTGCCAAGC 59 8408115 8408135 TGGGTGTAATATCACGTTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13183 FBgn0033667 FBtr0088054 1 1 1 82 2R 7793766 7793857 AAAGCTCTTCAGGGATCAC 59 7793702 7793720 AGACAATTATCTTGGCCCA 58 NA Drosophila melanogaster 50 CG12384 FBgn0033624 FBtr0088155 1 1 1 194 2R 7245772 7245854 GTACTGGACTGACACAACC 59 7245596 7245614 AATAGTTATTCCGCCCGAG 59 NA InUTR Drosophila melanogaster 50 CG11883 FBgn0033538 FBtr0088284,FBtr0113063,FBtr0088283 3 3 3 99 2R 6526827 6526985 ATATGCCAAGTTCATCGAGAG 59 6527046 6527064 ATTTGTTTCCTGGGTTCGT 59 NA Drosophila melanogaster 50 CG34363 FBgn0085392 FBtr0112584,FBtr0112585 3 2 2 80 2R 6226461 6226543 GGAGAACATGTTTAATGACCTC 59 6226402 6226421 GCTGATAGAATGGTCAACTG 58 NA Drosophila melanogaster 50 CG12911 FBgn0033501 FBtr0088336 3 1 1 107 2R 6146863 6146882 TATGGAGGATCATACGATCG 58 6146952 6147034 ATCGTAGTAGCGATCTCTG 58 NA Drosophila melanogaster 50 CG12917 FBgn0033490 FBtr0088329 1 1 1 60 2R 6026363 6026385 CCTCACTTACAATAGTACCTTCC 59 6026404 6026423 TGGGTAACAAATAGCCAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11778 FBgn0033371 FBtr0088563 2 1 1 281 2R 4971216 4971235 TTTCTAAGCATGACCGAGAG 59 4971479 4971553 AATAGACGTATCCGTCGAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG8083 FBgn0025709 FBtr0088560,FBtr0088562,FBtr0088561 2 3 3 90 2R 4967849 4967870 GAGGATCTCGATTTATGTACTG 57 4967920 4967992 CTCATAGTTGGTTATGTCGT 57 NA Drosophila melanogaster 50 CG8170 FBgn0033365 FBtr0110892,FBtr0088665 1 2 2 82 2R 4909360 4909484 GATAACATTGCTTTCAGGGAC 59 4909298 4909316 TGCAGACTGTAGTCATTGC 59 NA Drosophila melanogaster 50 CG8229 FBgn0033356 FBtr0088673,FBtr0088672 3 2 2 60 2R 4837448 4837469 AGCTGAAATACCATTACTACCC 59 4837409 4837427 GATGCTAGGAGACATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8635 FBgn0033317 FBtr0088727 1 1 1 129 2R 4518513 4518590 CCACCACGGATATTATTTGC 59 4518403 4518421 TTCAGCACATATCCAGCTG 59 NA Drosophila melanogaster 50 kermit FBgn0010504 FBtr0088813,FBtr0088814,FBtr0088812,FBtr0088811 3 4 4 64 2R 4035572 4035590 CTAATCCACGACTTCTCCA 58 4035526 4035544 GATATGTCAAAGCACTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nito FBgn0027548 FBtr0088857,FBtr0088858 2 2 2 123 2R 3850891 3850967 GAATATAGACCACGCGGTC 59 3851054 3851072 GATCGTAGGGATCAATCGG 59 NA Drosophila melanogaster 50 kappaB-Ras FBgn0040513 FBtr0089002 1 1 1 71 2R 3332856 3332874 CATTCGTTCTGGTCTACGA 59 3332803 3332821 CAATGTCAGCCTTGATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33558 FBgn0053558 FBtr0086193,FBtr0113470 1 2 2 80 2R 2850437 2850455 TGGATCTAAGTCTGGAACG 58 2826839 2850393 GCGAAGTGTTCTTCATGTC 59 NA Drosophila melanogaster 50 CG3409 FBgn0033095 FBtr0086140 3 1 1 141 2R 2588492 2588512 CATTCTGGTCAGTATTGTGGA 59 2588307 2588389 GAAGGTGTCATCCCATCTG 59 NA Drosophila melanogaster 50 CG6448 FBgn0032976 FBtr0113044,FBtr0085939,FBtr0113046,FBtr0085938 1 4 5 84 2L 22140896 22140914 GAGCATTTAGATCTTGCCG 58 22140962 22141603 AAACAGCATCTTGATCCTG 57 NA Drosophila melanogaster 50 CG8677 FBgn0026577 FBtr0081477 3 1 1 177 2L 21229974 21229992 GAGGAGTCTTTAGTTCCGG 59 21230186 21230618 GAATATCCACGTGGTCCAG 59 NA Drosophila melanogaster 50 CG9328 FBgn0032886 FBtr0081416,FBtr0081415 1 2 2 250 2L 20813340 20813433 CAAGTTCAATGCCAGAGTG 59 20813647 20813665 ACTCGGGATTTACGTACTG 58 NA DesignNoJunction Drosophila melanogaster 50 bwa FBgn0045064 FBtr0081331 1 1 1 84 2L 20069446 20069464 TGTTAACGCCTTTGTTCTC 58 20069512 20072369 CCTCTGGTCACTAACTCTC 58 NA Drosophila melanogaster 50 barr FBgn0014127 FBtr0081348 1 1 2 80 2L 20060349 20060427 CATGAGCAACTTCAAGATGG 59 20060288 20060306 AAGTAGATGGAGTCCACAC 58 NA Nonspecific Drosophila melanogaster 50 Lim3 FBgn0002023 FBtr0081169,FBtr0081170 3 2 2 96 2L 19081685 19081829 ACTTCTTCAAACGTTACGGT 59 19081608 19081626 AGATGGTAGACGTTGTCCT 59 NA Drosophila melanogaster 50 Cyt-b5-r FBgn0000406 FBtr0080932 1 1 1 60 2L 16789520 16789540 CTTCTTCATACAAATGGGCAC 59 16789408 16789426 GTAGAGGATGTTGGTGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Idgf3 FBgn0020414 FBtr0080864,FBtr0080862,FBtr0080863 3 3 3 91 2L 16451848 16451866 GATCAAGGATTTGAGTGCC 58 16451921 16452205 CATCATAGTACCAGCTGGA 58 NA Drosophila melanogaster 50 Syx5 FBgn0011708 FBtr0080831 3 1 2 83 2L 16308248 16308266 TACTCGGAGTTCATGATGG 58 16308313 16308399 CAACATTGTGAGCTTCTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31769 FBgn0051769 FBtr0080602 1 1 1 98 2L 14110567 14110642 TTCAATTACGGATGGGAGC 59 14110487 14110505 TTACGACTGTTTCAAGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5792 FBgn0032455 FBtr0089908,FBtr0089907 3 2 2 144 2L 12713556 12713574 GAGTTCAGTCTCCTTGTCG 59 12713363 12713449 GAACATGAAGCATCTTGGTG 59 NA Drosophila melanogaster 50 CG6388 FBgn0032430 FBtr0080367 3 1 1 125 2L 12429624 12429643 CTACGAGTTCGATGAACTCC 59 12429728 12429806 TCACCAATCATAATAGTGGCTC 59 NA Drosophila melanogaster 50 CG5325 FBgn0032407 FBtr0080326 1 1 2 148 2L 12094572 12094590 TTCCTACCATTCATGGAGG 58 12094701 12094777 TTCTGGTACCTTTCCTTGTC 59 NA Drosophila melanogaster 50 CG14931 FBgn0032374 FBtr0080256 3 1 1 60 2L 11788907 11788925 TGTCCAGAAGAAATCCCTC 58 11788949 11788967 AAAGTTATACGGATCGGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6488 FBgn0032361 FBtr0080248 3 1 1 82 2L 11497785 11497803 AGAGTTCTTTAAGACCGCT 58 11497663 11497739 GTCGCTGATCTTATTGTGC 58 NA Drosophila melanogaster 50 Nos FBgn0011676 FBtr0100487,FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486 1 10 10 92 2L 10825824 10825957 GATAAAGCGTACATCATCTACC 58 10825753 10825774 GTTTCGGTTAGCTGATAATGTC 59 NA Drosophila melanogaster 50 CG4908 FBgn0032195 FBtr0079950,FBtr0079949 1 2 2 60 2L 10223857 10223875 TCTAGCTTTATAACCGCCC 58 10223899 10223917 ATAGGTTTAGCAGGCAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34109 FBgn0083945 FBtr0110790 1 1 1 80 2L 10107868 10110939 TCCGACAAAGAACTAATGAGAG 59 10110978 10110998 GAAGATGAAGCCAAATAGCAG 59 NA Drosophila melanogaster 50 CG4747 FBgn0043456 FBtr0079930 1 1 1 191 2L 10006346 10006364 GGATCCACCATAGTCAAGG 59 10006576 10006916 AAATACGAGATCCTTGGCG 59 NA Drosophila melanogaster 50 CG4364 FBgn0032138 FBtr0079848 1 1 1 122 2L 9710877 9710895 AAACATAGGCGTAGAGCTC 59 9710712 9710792 GGCAAAGATCTTGTAGTCAC 58 NA Drosophila melanogaster 50 tai FBgn0041092 FBtr0079794 2 1 1 80 2L 9241541 9241615 CTGCTCAAGCTACTAAACG 58 9241658 9241677 GGAGTTGTTCATAGAACCTG 57 NA Drosophila melanogaster 50 Tsp29Fa FBgn0032074 FBtr0079754 1 1 1 146 2L 8935621 8935641 CATTCACCTGCAATAATGCTC 59 8935749 8935895 TTACGCCAAAGAACTGGAG 59 NA Drosophila melanogaster 50 CG9296 FBgn0032059 FBtr0079750 2 1 1 60 2L 8685390 8685408 CAGTTTCTACGACAACGAG 58 8685348 8685367 CTAAATGTAGTACAGGCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab30 FBgn0031882 FBtr0079426,FBtr0079428,FBtr0079427 2 3 3 60 2L 7031658 7031677 GTACTTCTTGGAGACATCCG 59 7031617 7031635 AATCTCGTAGAACAGACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31908 FBgn0051908 FBtr0079429,FBtr0079430 3 2 2 60 2L 7026744 7026762 GATGTGTTAGACAACTGGG 57 7026614 7026633 TTGTTTGCAGAGTCATAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nrv2 FBgn0015777 FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382 3 5 5 89 2L 6791573 6791591 TTTGATCTGGTACAAGGGC 59 6791308 6791520 CCAGGTACTTTGTACACCG 59 NA Drosophila melanogaster 50 CG31638 FBgn0051638 FBtr0079262,FBtr0113411 1 2 2 147 2L 6491593 6491687 GAGAAGTGGAGTAAGGTCC 58 6491798 6491816 TCTTTAGCTGCGTGATCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG9536 FBgn0031818 FBtr0079267 3 1 1 166 2L 6475576 6475594 AGCGTATTGGTTAATCCCA 58 6475253 6475446 GCCTTCAAGGCAATTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Ddr FBgn0053531 FBtr0091497 1 1 1 80 2L 6296733 6297035 CGACTCAAGTTATATCTCCGA 58 6297077 6297095 CCAGCACTGTGATTATGAC 58 NA Drosophila melanogaster 50 CG9226 FBgn0031782 FBtr0079210 2 1 1 82 2L 6126683 6126701 ATCTATGCGGGATACAAGC 59 6126560 6126578 AACTTGACAGGGTAATCGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG8891 FBgn0031663 FBtr0079048 1 1 1 107 2L 4978827 4978847 CGAGCCTCTAATCTTTAAGGG 59 4978672 4978690 GTCTTATCGTAGCCACTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2976 FBgn0031633 FBtr0077415 3 1 1 103 2L 4829969 4830049 GCAGCTTTAATCTCTATGACG 58 4829886 4829904 CTTGATCACAAAGAAGCGC 59 NA Drosophila melanogaster 50 CG34340 FBgn0085369 FBtr0112543 3 1 1 150 2L 3673292 3678219 ACCCATCCATATACCAGCT 59 3678393 3678411 ATACATCCGGATAGTGGGT 59 NA Drosophila melanogaster 50 CG8851 FBgn0031546 FBtr0077526,FBtr0077527 3 2 2 69 2L 3521306 3521384 CAGGATCAGAAGTACAAGCA 59 3521416 3521434 TATCTCCAGAGTCCCTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17259 FBgn0031497 FBtr0077667 3 1 1 71 2L 3036112 3036130 ATGATGGACGAGATGATCG 59 3036059 3036077 GTTAACAACGCGATATGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2991 FBgn0031474 FBtr0077627,FBtr0077625,FBtr0077626 1 3 3 121 2L 2866633 2866651 CCTCACAATTGCATCAGTC 58 2866736 2866826 GTTAACTGGAACCTTGGTC 57 NA Drosophila melanogaster 50 CG3528 FBgn0031430 FBtr0077781 3 1 1 65 2L 2517592 2517663 AAAGCAAATTTCGACCGTC 59 2517545 2517563 AAGCTGGAGATCTCTAGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab5 FBgn0014010 FBtr0077793,FBtr0077798,FBtr0077796,FBtr0077794,FBtr0077797,FBtr0077795 3 6 6 203 2L 2360797 2360985 AACTGCATAAACAAGCCTC 58 2360549 2360569 CGTTCTTAGGTAGTTTCTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG34174 FBgn0085203 FBtr0112365 3 1 1 63 2L 2214839 2214859 TCCGAAAGATATGAGAAGGAG 58 2214884 2215031 TCGAGTGAGCAATGTTACC 59 NA DesignNoJunction Drosophila melanogaster 50 Uch FBgn0010288 FBtr0077844 3 1 1 84 2L 2213548 2213624 AGCGAAACCTATGAGAAGC 59 2213482 2213500 TGTAGAAGAGATCCTCGGG 59 NA Drosophila melanogaster 50 Obp22a FBgn0043539 FBtr0100503,FBtr0077866 2 2 2 64 2L 1991986 1992007 CAAGGAGAACAATGTTCATAGG 59 1991943 1991962 TCTTCTTCAAACGATAGCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41482 FBgn0084042 FBtr0111177 3 1 1 107 X 22083319 22092641 TTTAGGATACCCTACAGTACAC 58 22083233 22083252 TCAACAATTGTACCAAAGGC 58 NA Drosophila melanogaster 50 l(1)19Ec FBgn0001560 FBtr0077285 2 1 1 64 X 20753527 20753545 GATGGTCAATGGTCAAACG 59 20753481 20753499 AAGTTATCTGGGTTGACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14207 FBgn0031037 FBtr0074733,FBtr0074734 3 2 2 121 X 19504572 19504590 TAACAAAGTGCTGAAGCTG 58 19504747 19504765 TCTTTGTGTCCGACTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 2 9 9 111 X 15788791 15788877 GAGTTACCGAATATGGCGA 59 15788952 15788970 TTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 CG9281 FBgn0030672 FBtr0074057,FBtr0074056 2 2 2 81 X 15601693 15601779 TGATTATGGTTCAGAACGTG 57 15601631 15601649 AGATCAATTCCGAACTCCA 58 NA Drosophila melanogaster 50 CG10353 FBgn0030349 FBtr0114451,FBtr0114452 2 2 2 125 X 11773010 11773092 CATCTACCAGAACATTATCACC 58 11772906 11772924 TACTCGATAATGTGCTCCC 58 NA Drosophila melanogaster 50 CG15204 FBgn0030256 FBtr0110985 2 1 1 107 X 10871823 10871841 CACGCACAATCATCATGTC 59 10863487 10871752 AATTCCACGCAGTATTCCT 58 NA Drosophila melanogaster 50 CG2258 FBgn0029997 FBtr0071109,FBtr0071111,FBtr0071110 3 3 3 80 X 7991100 7991207 CTCAATCGAGAGGATGATCC 59 7991039 7991057 GTCGATAAACATTCGCAGC 59 NA Drosophila melanogaster 50 CG15896 FBgn0029858 FBtr0070898 1 1 1 75 X 6185731 6185749 TATGTGGAGTTCCTGAGGA 59 6185788 6185806 CATTGTAGACCCTCAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dredd FBgn0020381 FBtr0114561,FBtr0114560,FBtr0114559 1 3 3 80 X 528200 528221 GAAGTTGCTAATCATACAAGCC 59 528073 528161 GTCACGTCTATCCTAAAGAGC 59 NA Drosophila melanogaster 50 CG41246 FBgn0085572 FBtr0114015 3 1 1 100 U 1570112 1571136 TATTCGCAAATTGGGTTCC 58 1570030 1570048 CTGGCCTATAGGTAATGGC 59 NA Nonspecific Drosophila melanogaster 50 CG31030 FBgn0051030 FBtr0110834 2 1 2 166 3R 25991017 25991035 ACTGCATAGGATTCGTGTC 59 25990814 25990832 GATCTGGATGAACATGGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG12428 FBgn0039543 FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236 2 5 5 149 3R 23529755 23529773 ATCCGATGTACACCAAGAG 58 23529568 23529642 TAATGAACACAGCTTCCGA 58 NA Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113384,FBtr0084928,FBtr0084927 1 3 7 185 3R 21532167 21532185 ACGTGTACCATCCTTATCG 58 21527375 21532019 TTGTTTCAAGATCTTCGACG 58 NA Drosophila melanogaster 50 Nup98 FBgn0039120 FBtr0084460 2 1 1 82 3R 19603920 19604018 GATGAGATTGTCCACTTTCG 58 19603857 19603876 TTTAGACCTTGACCAATGGG 59 NA Drosophila melanogaster 50 CG10175 FBgn0039084 FBtr0084423,FBtr0084421,FBtr0084422 3 3 3 99 3R 19350515 19350589 TACAGGAGCAAGAAGATTCC 59 19350435 19350453 CATGTTCTTATGCGGACAG 58 NA Drosophila melanogaster 50 CG13420 FBgn0038900 FBtr0084130 2 1 1 63 3R 17594518 17594536 ATCTCTGGTACGGAAAGTG 58 17594562 17594581 GATTCTCCTCGTACATACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 2 22 22 85 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202453 17202548 GTTCAGGAATACGATAGCG 57 NA Drosophila melanogaster 50 koko FBgn0051232 FBtr0083625 1 1 5 156 3R 14225882 14229247 TATCATTCTGGAGTTCGGC 59 14229433 14229451 CAAAGATGTACATCGGCAC 58 NA Drosophila melanogaster 50 Atx2 FBgn0041188 FBtr0083101,FBtr0083099,FBtr0083100 1 3 3 149 3R 11239226 11239300 TATGCATGGGTCTTCTCAG 58 11239413 11239431 TAGTTCAGTGACGAGTTGC 59 NA Drosophila melanogaster 50 RpII140 FBgn0003276 FBtr0082892 2 1 1 173 3R 9953825 9953844 CTATGTCTCCCTACGATCTG 58 9953980 9954073 TAGCTTGCTTACCCATAGC 59 NA Drosophila melanogaster 50 yrt FBgn0004049 FBtr0114374 2 1 4 80 3R 9257439 9257457 TTAGAAATGCAACGAGCTC 58 9257062 9257395 TGTTGATAGTCACCCTGAG 58 NA Drosophila melanogaster 50 sim FBgn0004666 FBtr0082711,FBtr0082710 1 2 2 88 3R 8900719 8900812 GATTTAAGGTGATACACTGCTC 58 8900861 8900879 GAGATTCTGGATGAGGCTG 59 NA Drosophila melanogaster 50 Gasp FBgn0026077 FBtr0112922 3 1 2 83 3R 1919999 1920017 CACAGTGTTCAAGATTGGC 59 1915401 1919952 CCATAGTAATCCTCGCACC 59 NA Drosophila melanogaster 50 mub FBgn0014362 FBtr0078469,FBtr0111017,FBtr0078468,FBtr0078470 3 4 4 103 3L 21908095 21908206 AAGAAGTTCGAAGAGTGGTG 59 21908272 21908290 AACGATCCACATTGACTGG 59 NA Drosophila melanogaster 50 CG34258 FBgn0085287 FBtr0112452 2 1 1 114 3L 19944749 19944767 ATAGTTATCCGGACTGCCT 59 19944599 19944618 TAGAACTTCCTTCCGATCAG 58 NA DesignNoJunction Drosophila melanogaster 50 TSG101 FBgn0036666 FBtr0075329 2 1 1 81 3L 16836406 16836425 GTTACCTTCGGAGATCATCC 59 16836468 16836618 GCATATAAGAGTTCGTGGGA 59 NA Drosophila melanogaster 50 st FBgn0003515 FBtr0075391 2 1 1 81 3L 16493263 16493341 GAATATAACCTGCTTTCAGGAG 58 16493383 16493401 GTTGAAGCTGTACTTGTCC 58 NA Drosophila melanogaster 50 CG13484 FBgn0036406 FBtr0075780 2 1 1 85 3L 14045807 14045825 AACAGAACTGGGATCATCC 58 14045740 14045758 GGAGGGATGAAAGTACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 caps FBgn0023095 FBtr0075832,FBtr0111005,FBtr0075833 3 3 3 158 3L 13222138 13222156 ATTTGTAGCTGTGCTTTCG 58 13231812 13244269 GTTCTGCCGGTATAATCCT 58 NA InUTR Drosophila melanogaster 50 CG5718 FBgn0036222 FBtr0076069 2 1 1 62 3L 11916171 11916189 AAGGACATCAAGACAACCG 59 11916127 11916145 CTCTAGCGTCTCAACTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14141 FBgn0036146 FBtr0076164 1 1 1 60 3L 11194894 11194912 TATCACCTGGTACAAGGAC 57 11194934 11194954 TTCGTGTACGTGCATATAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7498 FBgn0040833 FBtr0076731 1 1 1 77 3L 8148549 8148567 AATGGCTGACCATTGAGAG 59 8148490 8148508 TTGATCGCGTTAATGATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5150 FBgn0035620 FBtr0077086 1 1 1 60 3L 5589658 5589676 GAGGAGATGACACAGAAGG 59 5589700 5589718 AAAGGAAGTATCCCTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32237 FBgn0052237 FBtr0073356 2 1 1 137 3L 4852138 4852156 ATGGATACCGCTACAAGAC 58 4852019 4852037 CTTCCTCAACTGGAACCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Src64B FBgn0003501 FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321 2 5 5 158 3L 4596190 4596208 ATCTGAGCTTCATGAAGGG 59 4595932 4596069 TCTCAAAGAACCAGTCTTCG 59 NA Drosophila melanogaster 50 CG12017 FBgn0035429 FBtr0073052 1 1 1 86 3L 3289113 3289131 CATAGCCCTGATTGGTCTG 59 3289179 3290313 ACGTATACAACCTTAGATGGC 59 NA Drosophila melanogaster 50 CG1246 FBgn0035360 FBtr0072938 2 1 1 82 3L 2648947 2648968 GGAGTTCATCTTCATGATAACC 58 2649010 2649083 TGCACAAAGTGGTTATTACC 58 NA Drosophila melanogaster 50 miple FBgn0027111 FBtr0072505,FBtr0072504 3 2 2 160 3L 268947 269102 GAACAAAGATAAAGCTGCTC 57 269225 269243 ACATAGCAGACAGTTAACG 57 NA InUTR Drosophila melanogaster 50 Pk61C FBgn0020386 FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466 2 8 8 87 3L 142804 142822 ATATCGCGACTGCTTAGTG 59 142873 142954 GGTCGAAAGAGTTCTTTGC 59 NA Drosophila melanogaster 50 TM4SF FBgn0020372 FBtr0100255,FBtr0072130 3 2 2 171 2R 19767864 19767958 TAGCCATATTCCAGAGCCT 59 19768093 19768111 GATAGATTGATGGGCGAGG 59 NA InUTR Drosophila melanogaster 50 CG3501 FBgn0034791 FBtr0071907 1 1 1 60 2R 18769407 18769427 AACGGGAAGGATTAGTAATCG 59 18769367 18769386 TGGTTGTCGTAGAAGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30278 FBgn0050278 FBtr0071780 1 1 1 60 2R 18105440 18105461 CAAACATTCTGTTATCCTGGAC 59 18105401 18105419 GAATTTCATCGGGAAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11099 FBgn0034485 FBtr0086315 3 1 1 68 2R 16125482 16125500 CCTCGTACTACTTCATGGT 58 16125786 16125804 AGAAGTTGCAGGTGAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Atg7 FBgn0034366 FBtr0086711,FBtr0086712 1 2 2 153 2R 14510634 14510652 GCTTTGACAGTTATCTGGT 57 14508827 14510517 TCTTTGAGCGAATTTCCAG 58 NA Drosophila melanogaster 50 aft FBgn0026309 FBtr0089549 3 1 1 156 2R 13674237 13674309 AAGGATGAGATTAAATGGCG 58 13674426 13674446 CCACATCTAGTAGATTTCCAG 57 NA Drosophila melanogaster 50 CG15611 FBgn0034194 FBtr0086982,FBtr0086981 3 2 2 89 2R 13000829 13000848 AGCTTCTATTGCTATGTGAG 57 13000900 13000981 TTGATATGTCTGCAACCAC 57 NA Drosophila melanogaster 50 CG4282 FBgn0034114 FBtr0087144 2 1 1 79 2R 12211264 12211282 GTTCAAGTTCACCTGTTCC 58 12211387 12211405 CATGCATAGAGCTCATGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9068 FBgn0034106 FBtr0087138 2 1 1 81 2R 12171688 12171706 GATACTTTGACGGTTCCAC 58 12171751 12171833 CTTGAAGGACTTCATAGCG 57 NA Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930 3 5 6 106 2R 8335508 8335527 TATCATAACCTCAACAAGCG 57 8335595 8335676 GAGTTATCACTTGTGTACGC 58 NA Drosophila melanogaster 50 CG8701 FBgn0033287 FBtr0088740 3 1 1 66 2R 4259246 4259264 CCTAGAATCAAGATGCCCG 59 4259294 4259312 TCTTACGTCTAACGACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)01289 FBgn0010482 FBtr0086136 2 1 4 86 2R 2620751 2625474 TTCTGTTCTACGACAAAGACC 59 2620685 2620703 TATCGTTCTGATCGCACTC 59 NA Drosophila melanogaster 50 CG14400 FBgn0032896 FBtr0081449 2 1 1 60 2L 20857349 20857367 GTATATCGGCAATCGAGAG 57 20857307 20857325 CTCGTAAAGCATCAACTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33307 FBgn0053307 FBtr0080565 2 1 1 80 2L 13841027 13841108 TATCTTCGAAGAGTTCAAGGAC 59 13840968 13840988 GTCTTATATTGCAAGTCGGTG 59 NA Drosophila melanogaster 50 nub FBgn0085424 FBtr0112642 1 1 2 119 2L 12614102 12614120 ATAAGGTCCTGGAACTGAC 58 12614202 12622983 GACTGATATCATTTGGGTCC 57 NA Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079620,FBtr0079621 3 2 4 91 2L 8245213 8252236 AGATACCAGCTCCTAATGTC 58 8245141 8245159 CGTAATCGTATAAGCCGGA 59 NA Drosophila melanogaster 50 CG13984 FBgn0031796 FBtr0079247 2 1 1 77 2L 6309005 6309023 TTCGTTGTCTACAAGGCAG 59 6309061 6309082 GAGATCATCGTACTTATCATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34125 FBgn0083961 FBtr0110839 1 1 1 61 2L 4965942 4965960 TATGGCTATCCACAAGGAG 58 4965984 4966003 CTGATCATGCCGTAATACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mad FBgn0011648 FBtr0077616 3 1 1 101 2L 3148119 3148137 AATCCTTCCAACAACTCGG 59 3147815 3148055 AACACCCTTGCCTATATGAC 59 NA Drosophila melanogaster 50 CG9216 FBgn0030726 FBtr0074252,FBtr0074253 3 2 3 163 X 15991601 15991749 GTCGATGATCAATGTGCTC 58 15991456 15991474 TACTGTTCGGAGACATTGG 58 NA Drosophila melanogaster 50 CG11581 FBgn0030540 FBtr0073892 1 1 1 66 X 14071741 14071759 TCCAGCAGGATTCAATGTG 59 14071789 14071807 TTGTTGGTAGGGATTCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11063 FBgn0030530 FBtr0073834 3 1 1 117 X 13721461 13721481 CAATCTGTATCACACCAACTG 58 13721130 13721382 GCCCGAGTACATGTAATCC 59 NA Drosophila melanogaster 50 Lig4 FBgn0030506 FBtr0073847 1 1 1 80 X 13560304 13560324 AAGCAGGGATCAAGATATCAG 59 13560182 13560263 CAGCCCTTTGATGTAATCAG 58 NA Drosophila melanogaster 50 CG12715 FBgn0030443 FBtr0073750 2 1 1 60 X 12947935 12947956 GTTTATACCGGAATCTGTACGA 59 12947896 12947915 ATTACCTCATCCACATCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL49 FBgn0030433 FBtr0073691 1 1 1 243 X 12801265 12801347 AAAGCTAAGCCAGCTTACC 59 12801554 12801572 ATGGTAACCCAGTTCTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32702 FBgn0052702 FBtr0071370 2 1 1 80 X 9458597 9458674 CCTCCTATAACTACGAGCA 57 9458535 9458553 GGAATTTGCTTGGAAAGTG 57 NA Drosophila melanogaster 50 dx FBgn0000524 FBtr0070914 2 1 1 143 X 6431034 6431120 TGTTTACGACATTGCATCG 58 6431227 6431245 AATGCAATCTTGAGGAAGC 58 NA Drosophila melanogaster 50 CG6067 FBgn0029828 FBtr0070864 2 1 1 120 X 5851296 5851314 TCACTAGCTGCATCTTCAG 59 5851467 5851485 GTCACTCCGAATACGAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 wds FBgn0040066 FBtr0070438 3 1 1 143 X 2481412 2481484 GAGGAAAGTGGATCGTGAG 59 2481591 2481609 AAGCAATGATGTTCTCCGT 59 NA Drosophila melanogaster 50 bcn92 FBgn0013432 FBtr0070431 3 1 1 186 X 2043364 2043443 CAACTTCAGAATGTACGCTG 59 2042820 2042841 GGTCTTCTTGTTCTCTATAACC 57 NA DesignNoJunction Drosophila melanogaster 50 CG40625 FBgn0085503 FBtr0113915 1 1 1 80 U 5511406 5511488 AAGAATGGACCTACAGGGA 59 5511531 5511550 CCTGTGTTACAACAATCGAC 59 NA Nonspecific Drosophila melanogaster 50 Irk2 FBgn0039081 FBtr0084426,FBtr0084425 2 2 2 88 3R 19340991 19341009 TCTTTGCTCTCATCTGGTG 59 19340868 19340939 CCAACCAGATTCCTCTTGG 59 NA Drosophila melanogaster 50 CG4367 FBgn0038783 FBtr0083901 2 1 1 69 3R 16130582 16130600 GATGTTAAGTCCAACCGGA 59 16130531 16130549 GTCATCGTAGTTTGTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33333 FBgn0053333 FBtr0083441 1 1 1 250 3R 13243369 13243387 CTTACGGTCAAGACCAAGG 59 13243601 13243619 TTGACTAGCTCCTACAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11598 FBgn0038067 FBtr0110781 1 1 1 103 3R 8461359 8461377 CTTGAGTAATGTATGCGGG 57 8461443 8461526 GAATAACGCTTGTGTTTAGG 57 NA Drosophila melanogaster 50 CG10038 FBgn0038013 FBtr0082614 3 1 2 185 3R 8176025 8176106 ATTCGATGGAGAAGGAGTG 58 8175646 8175664 ATGTAGGTGCGACTAAGAC 58 NA Drosophila melanogaster 50 CkIIalpha FBgn0000258 FBtr0070042,FBtr0070043 2 2 3 269 3L 23093381 23093400 GGATATCATACGAGACGGAG 58 23095396 23095414 ATATTCATCCGGTTTGTGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG33292 FBgn0053292 FBtr0078428 2 1 1 91 3L 21651541 21651559 AAGAAGAGTGCTCCTTCAG 58 21651614 21651632 AAGTTCTTGAGGGAGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11309 FBgn0037070 FBtr0078407,FBtr0078406 3 2 2 109 3L 21297076 21297094 CTCAAGTGGCACTATTACC 57 21296625 21296643 GAACCGTAATGCTGATCTC 57 NA DesignNoJunction Drosophila melanogaster 50 l(3)73Ah FBgn0002283 FBtr0075311 2 1 1 77 3L 16582569 16582587 TAACGCATCTCAAGAAGCT 58 16582628 16582764 TGCACAGTATGTCGATCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG7560 FBgn0036157 FBtr0076173 3 1 1 83 3L 11418884 11418905 CAGAGGGATACACTAGTTTAGG 59 11418949 11419034 CTCCAGCATCAATCTTTGC 59 NA Drosophila melanogaster 50 Rab-RP3 FBgn0015793 FBtr0076705 1 1 1 137 3L 8291043 8291061 GAGGTGGACTTTGAAGAGG 59 8291162 8291228 GTGTTGGCGTTTAAGTTCG 59 NA Drosophila melanogaster 50 CG10077 FBgn0035720 FBtr0076941,FBtr0076940 1 2 2 65 3L 6947251 6947269 CAGGTACTCATGTGGTCAG 59 6947204 6947222 ATTAAGGAATTCCTCGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sr-CII FBgn0020377 FBtr0088004 1 1 1 93 2R 8096891 8096981 CCAGCACATTACAGTTACCA 59 8096817 8096838 CGGAATATTTGTGTTCATGTCC 59 NA Drosophila melanogaster 50 CG14401 FBgn0032900 FBtr0081430 1 1 1 121 2L 20870745 20870834 AAGTACCATGAGGGAATGC 59 20870919 20870937 TTCATAAAGGGCACCACAG 59 NA DesignNoJunction Drosophila melanogaster 50 heix FBgn0028375 FBtr0080852 1 1 1 89 2L 16298934 16298954 CCTATTTCGACTTCATCAAGG 58 16298187 16298883 ATACCACCTCATCCTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31839 FBgn0028543 FBtr0080618 2 1 1 175 2L 13965842 13965860 AATGGAATATGCACTGCTC 57 13965685 13965703 CAGTACTTACGAGTCTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ACXA FBgn0040510 FBtr0080415 1 1 1 80 2L 12924120 12924195 AACTACAAGCTCAACCTGG 59 12924236 12924257 GTTAAGCAGGATTATGATGGAC 58 NA Drosophila melanogaster 50 CG14945 FBgn0032402 FBtr0080295,FBtr0080294 2 2 2 160 2L 12051364 12051454 CAATGACTTCGATGTGTCTC 58 12051574 12051595 CCAGTTCATTTCGATACAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 Cry FBgn0005664 FBtr0080281 3 1 1 77 2L 11944243 11945003 GACATACTTGTTGCTCTGC 58 11945044 11945062 TTAAGATCGATTGGACGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7164 FBgn0031946 FBtr0079487 2 1 1 80 2L 7781833 7781912 ATTCACTCGACCATGAAGTC 59 7781955 7781973 ATTCGGAGTTCCAGATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13999 FBgn0031753 FBtr0079150 3 1 1 119 2L 5955796 5955814 GGTCTGATTGCCCTATCAG 59 5955638 5955656 GATCCAGTCAAGATGCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Art2 FBgn0031592 FBtr0077476 3 1 1 289 2L 4279022 4279098 TTCTTCAGGCACAAGACTG 59 4278625 4278645 GCAAATAATAACGACTCGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34016 FBgn0054016 FBtr0100071 3 1 1 157 2L 1099805 1099823 AACAAGTGGTCAGATTGTC 57 1099944 1102165 CCAAACAAATACACTGCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL10 FBgn0031231 FBtr0078124 3 1 1 82 2L 203882 204002 ATACAAAGAAGCCTTTCCCT 58 204045 204065 CGCTGTATATTGATCTTACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31976 FBgn0051976 FBtr0078152 3 1 1 71 2L 139181 139258 GAGAGCTGTTATTATGTGACC 58 139130 139148 CATGTTCACAACAAACCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mir-276aS FBgn0067717 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30254 FBgn0050254 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:L2:44EF FBgn0011906 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-G2743 FBgn0086034 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR31892 FBgn0051892 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snmRNA:765 FBgn0065083 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 l(1)G0196 FBgn0027279 FBtr0077355 2 1 5 137 X 21907084 21907102 GGTGGAGTCTTTCTGAGTG 59 21907203 21907449 ATCGAACCCTTCCATTGAC 59 NA Drosophila melanogaster 50 CG14617 FBgn0031191 FBtr0100651,FBtr0077352 1 2 5 152 X 21886354 21887249 CTGGGCAATAAATATGTCGAG 58 21887363 21887381 GAAGATCAGGGTGTCTCTG 59 NA Drosophila melanogaster 50 CG14613 FBgn0031188 FBtr0077367 3 1 1 64 X 21873004 21873022 TGTGCTATAAAGTGGCCAC 59 21872795 21872814 AATGGATACGGTTGTACACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32819 FBgn0052819 FBtr0070051,FBtr0070050 1 2 2 252 X 21490060 21490078 CATCGAGAAGTTCGATCCC 59 21489666 21489684 CTGTTGGACCTTCTGAAGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Sep1 FBgn0011710 FBtr0077198,FBtr0077199 3 2 2 121 X 21230619 21230638 ATTCGAGTTCACCCTAATGG 59 21230722 21230806 TTTGTTTCTCTATGGCGTC 57 NA DesignRelaxed Drosophila melanogaster 50 CG33713 FBgn0064116 FBtr0077227,FBtr0091702 1 2 2 60 X 21189427 21189446 AGGAGAACAATCTAGACAGG 58 21189386 21189404 TCCAGCTTAACCAAGTCAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 r-cup FBgn0031142 FBtr0077269,FBtr0077270 3 2 2 60 X 20896647 20896666 AGAAGTACTTCGACAAATGC 58 20896606 20896626 AGATAAAGAGCCTTGTGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sw FBgn0003654 FBtr0089398 3 1 13 86 X 20105886 20105904 ACTGGTCTACACAAAGCAG 59 20101661 20104507 TCGTCGTCTCCATAATAATCC 59 NA Drosophila melanogaster 50 CG9581 FBgn0031093 FBtr0070026 1 1 1 60 X 20063412 20063431 TCCAAGAAGTATATGAGCGG 58 20063371 20063389 AGTAGAAGTCCGAGTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15814 FBgn0030873 FBtr0074471,FBtr0074469,FBtr0074470,FBtr0074468 1 4 4 97 X 17743220 17743238 TGATGTTCTGCTTCTACGG 59 17743079 17743160 TGTGTAGTAGCCAATAGCTG 59 NA Drosophila melanogaster 50 Ucp4A FBgn0030872 FBtr0074464 1 1 1 130 X 17739670 17739688 CTTACATCGTTTCCGTGGT 59 17739779 17740724 GTATTGCATATTGGACTTTCCC 59 NA Drosophila melanogaster 50 OdsH FBgn0026058 FBtr0074461 2 1 1 169 X 17705780 17705799 ATGATTGTACAGAGTCCTCG 58 17705931 17707351 GAACCAAACCGCTATACGA 59 NA Drosophila melanogaster 50 CG10597 FBgn0030832 FBtr0074398 1 1 1 60 X 17125009 17125027 AGGTAAGAAATCGAGGAGC 58 17124967 17124987 GAAGGATATCGTTAACGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4991 FBgn0030817 FBtr0074384 3 1 2 135 X 16997410 16997429 GCTAAATCTTGTAGTGGAGG 57 16997632 16997653 GTTATTAGACCTCTTTAGTGGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG15865 FBgn0015336 FBtr0074375 2 1 1 60 X 16555350 16555371 AGAGAACCAATAGATTCTCCTG 59 16555311 16555330 TTGATTTGATTCCCGTTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Stim FBgn0045073 FBtr0074161,FBtr0074160,FBtr0074159 2 3 3 80 X 15829502 15829520 GAATGTTCTGTACGGTCGA 59 15829366 15829460 GTAATACGTGCTCTAGAACCC 59 NA Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 3 9 9 111 X 15788792 15788878 AGTTACCGAATATGGCGAG 59 15788952 15788971 TTTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 Aats-arg FBgn0027093 FBtr0074178 1 1 1 115 X 15737019 15737100 AATCCAAGAAGCGATTCGA 59 15736922 15736940 ATTGCAAATTAGCTCCCAC 58 NA Drosophila melanogaster 50 CG8565 FBgn0030697 FBtr0074103 2 1 1 105 X 15734052 15734322 TGCATATACGACTGGAACC 59 15734391 15734409 TATCTTCACCCGTACATCG 58 NA Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 1 7 7 80 X 15717652 15717670 TATCACCGGCATCTATTCG 59 15717712 15717802 TTGCCGTATATCAACAGTCTC 59 NA Drosophila melanogaster 50 CG8974 FBgn0030693 FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186 3 5 5 212 X 15688455 15688537 GATCCACGTAACAAAGTTCC 58 15688197 15688215 CTGTTCATCCTCGTATTGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG15890 FBgn0030576 FBtr0073939 3 1 1 94 X 14652489 14652507 CGCTACATTGAGAGTCCTG 59 14652352 14652432 GGAATCGGTACATCCATAGG 59 NA Drosophila melanogaster 50 CG14414 FBgn0030571 FBtr0073931,FBtr0073930,FBtr0073932 3 3 3 220 X 14475704 14475797 ATATGATGAAACGCAGAAGC 58 14475980 14475998 CGCGATCCTTGTTAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1461 FBgn0030558 FBtr0073908 3 1 1 143 X 14157990 14158074 CCGATGAGATCTATGAGCA 58 14158181 14158199 CTATGATCCAACCCATTCG 57 NA Drosophila melanogaster 50 CG32639 FBgn0052639 FBtr0073734 2 1 1 104 X 13130221 13130239 TATGGAGGATGATCCATCC 57 13130135 13130153 AAATAATTGGCGAATGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Smr FBgn0024308 FBtr0073707,FBtr0073706,FBtr0073708 2 3 3 86 X 12604887 12604908 CAATTATCTTGGACAGAAGCTG 59 12604744 12604841 TTGGATTCACTAACATCCGA 58 NA Drosophila melanogaster 50 bif FBgn0014133 FBtr0073527,FBtr0073526 1 2 2 139 X 11575137 11575759 TGCAATTGCAGATTTCACAG 59 11575861 11575879 CAACAGAGTGATGACCTCC 59 NA Drosophila melanogaster 50 Or10a FBgn0030298 FBtr0073548 2 1 1 92 X 11310698 11310717 TTTATTTCGAGTTCTGTGCC 58 11310566 11310643 CCAAGTGATCAGTGTAGGG 59 NA Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489 1 8 12 99 X 11291936 11292011 ATATAACCAGAGAACCGCG 59 11292074 11292092 GACACATAGATACCCTGGC 59 NA Drosophila melanogaster 50 CG15211 FBgn0030234 FBtr0112977,FBtr0073376,FBtr0112975,FBtr0112976 2 4 4 187 X 10667187 10671999 AATTGTGGAGTTTGTGCTG 58 10672150 10672250 TCAGCTCCGAGAATATCCA 59 NA Drosophila melanogaster 50 Psf3 FBgn0030196 FBtr0071465 1 1 1 278 X 10278772 10278790 TATCGCAATGTGCATAAGG 57 10278451 10278531 TTCGATGTACTGACTGTTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG33557 FBgn0053557 FBtr0091534 2 1 1 139 X 9903604 9903622 TGTTAATTCGGCCTACGAG 59 9903724 9903800 ATTCAGTGCCTGTTTCTAGG 59 NA Drosophila melanogaster 50 CG12112 FBgn0030048 FBtr0071233 2 1 1 93 X 8453600 8453693 GGATCTATACGAATTCCATGC 58 8453527 8453546 TAGTTCAGAAGGATGTCCTC 58 NA Drosophila melanogaster 50 CG10958 FBgn0030004 FBtr0071153 3 1 1 60 X 8028134 8028153 GCTAAAGATTCTTGAACCGT 58 8028174 8028194 TATATTGTCGATGCGTACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 3 12 15 240 X 6978842 6979199 CTTTGTTCGGTACAACAAGC 59 6978621 6978640 AATTGATCTACCTCTGTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 CG14430 FBgn0029927 FBtr0071004 3 1 1 63 X 6880912 6880930 GACTATGTGCGAAACAAGG 58 6880955 6880975 CCGTATCACAAGTGTAAATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33664 FBgn0053664 FBtr0091643 1 1 1 60 X 6278508 6278526 AAGTTTGTAAGCGACACTC 57 6278550 6278568 TGTTGCCTTCAAGTAACTG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15892 FBgn0029859 FBtr0070926,FBtr0070927 1 2 2 63 X 6187896 6187914 TGTATACGATCCGAAGCTG 58 6187851 6187869 AATGGCTTTGTATTTGCCC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3108 FBgn0029807 FBtr0070833 3 1 1 124 X 5671799 5671818 GTACATTCTGTATCCTTGGG 57 5671623 5671641 ATCCCACCGTATACTTCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17761 FBgn0040914 FBtr0070856 2 1 1 203 X 5537047 5537065 GAAAGATTACTGGACCAGC 57 5535973 5535991 ATCCAAATTGAAGTCCTCG 57 NA DesignNoJunction Drosophila melanogaster 50 Xpac FBgn0004832 FBtr0070670 2 1 1 65 X 3997716 3997734 TATACCAGTGCAGTACGAG 58 3997669 3997687 TTGAACAAATAGGAGTCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13021 FBgn0029669 FBtr0070570,FBtr0070571,FBtr0070572 3 3 3 60 X 3409538 3409556 TGTACGAATCGGTAATCCG 59 3409579 3409598 GGATCCTTCGTCCTTATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 1 13 13 80 X 2567070 2567088 ATGGAGGGTAATCACACCT 59 2567131 2567221 CTGTATTGAGAGCTCATGCT 59 NA Drosophila melanogaster 50 Actn FBgn0000667 FBtr0070343,FBtr0070345 2 2 3 81 X 1924300 1924320 CTGGAGAATCTTAATACTGCC 57 1923951 1924258 TGATCAAATCATCTGGATCC 57 NA Drosophila melanogaster 50 sta FBgn0003517 FBtr0070291 3 1 3 60 X 1376962 1376980 GTCCACTAACCATATGCCT 58 1376920 1376940 GACATGTTAACGTGGAAAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3777 FBgn0024989 FBtr0070066,FBtr0070068,FBtr0070067 1 3 3 98 X 241723 242116 CAAACAAGACTGGTAGAAATCG 59 242175 242193 CTACTGATGTGGCATCTGG 59 NA Drosophila melanogaster 50 CR40546 FBgn0085742 FBtr0114192 1 1 1 60 U 5727892 5727910 GGTGTTGTAAGTGGTTGAG 58 5727932 5727952 CAAGGAAAGGATAAGCTTCAG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40948 FBgn0085541 FBtr0113954 2 1 1 60 U 8664470 8664494 CTAGATGAAGATACTAGACACATGG 59 8664434 8664455 CTTGAATAAGTCCAATGCTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dyrk3 FBgn0027101 FBtr0100402,FBtr0100404,FBtr0100406,FBtr0100403,FBtr0100405 1 5 5 111 4 1230562 1230632 AGTTACAGGGCAGAATAGG 58 1230469 1230487 AAGACGAAGACTGGAATGG 59 NA Drosophila melanogaster 50 CG32016 FBgn0052016 FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232 3 6 6 146 4 974515 974656 CTACTCTCAAGAATTGCATTCG 59 974390 974408 CTTGGTGATTGCGTATCCT 59 NA Drosophila melanogaster 50 CG11576 FBgn0039882 FBtr0085852 3 1 1 60 3R 27633695 27633713 TTTATGCCCTACATGGGAC 59 27633653 27633671 CCTCGCCAATAAAGTAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11315 FBgn0039801 FBtr0085721,FBtr0085722 3 2 2 129 3R 26571886 26571904 CAGACTTGCGAAGATAGTG 57 26571775 26571793 TAAAGTCGAAGCTCATCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11313 FBgn0039798 FBtr0085724 3 1 1 92 3R 26556350 26556371 GGGATCACTGATCAATAATCGA 59 26556226 26556299 ACTCTGAAAGAGACATCTCCT 59 NA Drosophila melanogaster 50 CG2217 FBgn0027544 FBtr0085630 1 1 1 209 3R 26244956 26244977 CGCCGGATTATATTACTATCAC 58 26244698 26244717 ACGCTAAGATGCAATTACAC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Mgat2 FBgn0039738 FBtr0085602,FBtr0100418 3 2 2 182 3R 25845044 25845119 TCAATTATCTGGACTCGCG 59 25844816 25844834 GACTACTGGCATTCAGGAG 59 NA Drosophila melanogaster 50 Gfat2 FBgn0039580 FBtr0085297 2 1 1 63 3R 24164219 24164237 CAGGATGAGGTTCGATACG 59 24164174 24164192 GATCTCCGGTATGTACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5815 FBgn0027574 FBtr0085106,FBtr0085107 2 2 2 128 3R 22939849 22939867 GATGTTCAGAGATCACAGG 57 22940019 22940039 CTCAGAATCGTATTCATCCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG14247 FBgn0039454 FBtr0085043 1 1 1 242 3R 22563729 22563747 ATATTCTACGTGTGCTCCG 59 22563953 22563971 ATTTATGCTGGGACACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LpR1 FBgn0066101 FBtr0113480,FBtr0084925 1 2 6 155 3R 21575100 21577790 TATAAATGAGGCCACTTGCT 59 21573920 21573938 TATTCATCCGGTGAACAGG 59 NA Drosophila melanogaster 50 Lgr3 FBgn0039354 FBtr0084899 3 1 1 92 3R 21501836 21501903 TATTACAAGGTTGTGCTGGA 58 21501958 21501976 GATAAGCATCGAAACCTCC 57 NA Drosophila melanogaster 50 CG31288 FBgn0051288 FBtr0084860 3 1 1 72 3R 21124465 21124483 CTACAAGAAGGCAATGCTC 58 21124348 21124429 CTTAACAGTGGGAAATGCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG31098 FBgn0051098 FBtr0084863 3 1 1 82 3R 21117524 21117542 AAGCTAAACTACCAGGGAC 58 21117402 21117478 CCAATGACACCCATAAGAC 57 NA Drosophila melanogaster 50 CG13654 FBgn0039290 FBtr0084805 1 1 1 80 3R 21036521 21036600 ACCAAGGATCAGAGATTTAAGG 59 21036639 21036659 AGGTCCTTCAATGGTAATACG 59 NA Drosophila melanogaster 50 Ets96B FBgn0039225 FBtr0084696,FBtr0084697 3 2 2 104 3R 20620073 20620092 GAACATCGAGTTTCTTTGAC 57 20620158 20620328 ATGATGGAAATCTGTAGCAG 57 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0084683,FBtr0100635,FBtr0084685 3 3 17 92 3R 20521093 20521111 GGACATTAAGGACGAGACG 59 20521838 20527819 TGGTGTTCATCTAAGTCATCG 59 NA Drosophila melanogaster 50 atl FBgn0039213 FBtr0084656,FBtr0084657 3 2 2 93 3R 20459010 20459028 GTGGGTCTCTATACGTTCG 59 20459082 20459165 CTCCGCTATATCTAATGTAGGC 59 NA Drosophila melanogaster 50 Lsd-1 FBgn0039114 FBtr0084456,FBtr0084455,FBtr0084457 3 3 3 167 3R 19591778 19591859 AACATACCCAGAAACCTGG 59 19591989 19592008 CTGAAGGCTACCATAGAACG 59 NA Drosophila melanogaster 50 CG16723 FBgn0039092 FBtr0084484 2 1 1 80 3R 19421265 19421285 TTATCCTATCCTTGATGTGCG 59 19421145 19421225 GAATACTCCTGGGATCATCAC 59 NA Drosophila melanogaster 50 CG10175 FBgn0039084 FBtr0084423,FBtr0084421 2 2 3 104 3R 19350706 19351231 TAAGATCTCTGCGGAAAGAG 58 19350621 19350639 TATAGTAGCCTCCTCGCTC 59 NA Drosophila melanogaster 50 CG4408 FBgn0039073 FBtr0084431 1 1 1 60 3R 19188044 19188062 TATATCCCTCATCAGGTGG 57 19188002 19188021 GTAATCGGTATCTTGAGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sec13 FBgn0024509 FBtr0084409 2 1 1 129 3R 19183574 19183592 GATCTATCCGAGTGGACCT 59 19183685 19183703 TCTCCTTCCACAATGTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4771 FBgn0039018 FBtr0084323 3 1 1 96 3R 18569644 18569662 TTAATAGGAGCCTCAACCG 58 18569504 18569585 ATGTATGGAAGACAGTCCTC 58 NA Drosophila melanogaster 50 CG31169 FBgn0051169 FBtr0084217,FBtr0084218 1 2 2 80 3R 18209069 18209140 TATGCAACACGAATTTCCG 58 18209184 18209202 GCCTCTATCATCAGTTCCG 59 NA Drosophila melanogaster 50 CG31465 FBgn0051465 FBtr0084147 3 1 1 99 3R 17708823 17708841 GTCAAGCAATCAATCGTCG 59 17708961 17708979 CCAGGATCCGTTTAGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 2 22 22 85 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202453 17202548 GTTCAGGAATACGATAGCG 57 NA Drosophila melanogaster 50 Stat92E FBgn0016917 FBtr0089484,FBtr0089485,FBtr0089487 1 3 5 91 3R 16365052 16365134 TCAAAGCGTCAAGATCCTG 59 16364979 16365001 GTTCCACTAGTAGATCCATTCTC 59 NA Drosophila melanogaster 50 CG6195 FBgn0038723 FBtr0083803 3 1 1 124 3R 15473742 15473761 GGATTTGATGTGCTCAAGAG 58 15473584 15473655 GTGAACTCATAGTTTGCCG 58 NA Drosophila melanogaster 50 fray FBgn0023083 FBtr0083638,FBtr0083637 2 2 2 60 3R 14413095 14413116 GATCATGGCTATGACTTTAAGG 58 14413134 14413155 CCATTTCGATAGCTGTTATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Keap1 FBgn0038475 FBtr0083423,FBtr0083424,FBtr0083422 2 3 3 83 3R 12901902 12901979 AAATTTCACTCAGGTGTGC 58 12901837 12901856 AGTTCATCCCTTCGTATCAG 58 NA Drosophila melanogaster 50 CG10324 FBgn0038454 FBtr0083356 1 1 1 135 3R 12471665 12471756 ATGGCAAGTGCATAAACAC 59 12471548 12471568 CGGTCTGATCTAATTTCTTCC 58 NA Drosophila melanogaster 50 CG10345 FBgn0027562 FBtr0083360 3 1 1 120 3R 12424212 12424287 TATGGAGAAGCTCTTCCGA 59 12424110 12424129 GCTATCCACGGTATAACCAC 59 NA Drosophila melanogaster 50 CG6006 FBgn0063649 FBtr0113476 2 1 2 121 3R 11995750 11995823 TTACCTCTTAACAAGATCGAGG 59 11995905 11995923 TGGTTGTCTGTCTTCTGAC 59 NA Drosophila melanogaster 50 Akt1 FBgn0010379 FBtr0083226,FBtr0083228,FBtr0083227 2 3 3 108 3R 11928589 11928607 GACAAGGAGTTTACGGGAG 59 11928679 11928768 CTCCTTGGTAGCTGAACTG 59 NA Drosophila melanogaster 50 Tm2 FBgn0004117 FBtr0083080 2 1 3 104 3R 11138919 11138938 TGTCCATCAAGTTGAAGGAG 59 11139005 11139327 CATTGAAGAGACGGTCCTC 59 NA Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089963,FBtr0089966,FBtr0089967,FBtr0089962,FBtr0089961,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 3 10 12 206 3R 11120874 11120892 TTGCTCGAAGAAGACTTGG 59 11122405 11122424 GTATTTCTTGTCAGCCTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG4210 FBgn0038302 FBtr0083049 3 1 2 80 3R 11039816 11039898 TCTCCATGATTCAAGAACTGG 59 11039938 11040026 CGTCTCGTTTAAGATCTTCCT 59 NA Drosophila melanogaster 50 Zeelin1 FBgn0038294 FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034 2 4 5 121 3R 11002151 11004015 CTACAGCCGAACAATTCCA 59 11001978 11001996 GCTTGTCCCTCAAGTAGAG 59 NA Drosophila melanogaster 50 trx FBgn0003862 FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949 3 5 5 118 3R 10091224 10091245 ATGAAGTATCGGACTCTTAAGG 59 10091050 10091145 TCGATAACCATTTCACCCG 59 NA Drosophila melanogaster 50 Art9 FBgn0038188 FBtr0082879 2 1 1 85 3R 9768735 9768756 GAAGGTCGATATAATAGTGTCC 57 9768612 9768630 TTTCTCTGGCAAAGATCAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG14367 FBgn0038170 FBtr0082819 2 1 1 163 3R 9520223 9520241 TTCATACGGATGATGACGC 59 9520516 9520534 ATCATTTGTTCCACCTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9759 FBgn0038160 FBtr0082861,FBtr0082862 3 2 2 73 3R 9434792 9434810 TCTGGCGGATGTAAATCAG 59 9434737 9434755 CGAATCCAAATTGTCTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8138 FBgn0038122 FBtr0082732 2 1 1 60 3R 9007633 9007652 TGACAACGACAATTATACGG 57 9007673 9007693 CTTGTGAGCAAACATAAGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(fu) FBgn0005355 FBtr0082665 1 1 1 60 3R 8516969 8516987 CAACTATCCCGGAGATGTG 59 8516927 8516946 TCCGAAACTAATGTAGTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18765 FBgn0042110 FBtr0113346 1 1 1 193 3R 7516534 7516555 CAGCTGTATACGATCTATTCAG 57 7516308 7516380 AGTTTCAAATGCCCAATGG 58 NA Drosophila melanogaster 50 CG6790 FBgn0037915 FBtr0082460 2 1 1 60 3R 7402819 7402840 CACCTAAGATGGATTGTAGGAC 59 7402780 7402799 GACAGTTGCAGTAAATCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL3 FBgn0020910 FBtr0082349,FBtr0082346,FBtr0082348 1 3 5 92 3R 7048444 7049127 AAGAACTGGTACAAGAGCA 58 7049183 7049201 GAAGTCATTCTCGATGCTC 57 NA Drosophila melanogaster 50 RpL3 FBgn0020910 FBtr0082349,FBtr0082346,FBtr0082348 2 3 5 93 3R 7048443 7049126 CAAGAACTGGTACAAGAGC 58 7049183 7049201 GAAGTCATTCTCGATGCTC 57 NA Drosophila melanogaster 50 Ugt86Dh FBgn0040252 FBtr0082340 1 1 1 60 3R 7002629 7002649 TTTGGAAGACTGACTATCCAG 59 7002668 7002689 CATGTTCTAGCAAAGACATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tomboy20 FBgn0037828 FBtr0082316 2 1 1 60 3R 6561506 6561527 TATACTCTTCATGGGCTATTGC 59 6561467 6561485 GAAATCTGGATCACTCCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12946 FBgn0037750 FBtr0082159,FBtr0110789 1 2 2 97 3R 5597848 5597925 AGCTGAAGAAAGTGGATCAG 59 5597770 5597791 CTTCAGTTCACTTAGAAAGTCG 59 NA Drosophila melanogaster 50 CG8481 FBgn0037747 FBtr0100583 1 1 2 88 3R 5594552 5594654 TACTATGAAGGGCTTCCTC 57 5594706 5594724 GTGTCTTTCATAAGCTCCG 58 NA Nonspecific Drosophila melanogaster 50 PpD3 FBgn0005777 FBtr0082129,FBtr0082128 3 2 2 85 3R 5575740 5575758 GAGGTTAAGGATATGGGCT 58 5575804 5575881 CCCATAGTATCACAATAGTTCG 58 NA Drosophila melanogaster 50 ps FBgn0026188 FBtr0082038,FBtr0111031,FBtr0111029,FBtr0111030,FBtr0082037,FBtr0111028,FBtr0111027 2 7 9 133 3R 5269786 5270772 CATATTCATCATGGCGAGAC 58 5270868 5270886 GACATCTTGACCCTAGCAC 59 NA DesignRelaxed Drosophila melanogaster 50 hyx FBgn0037657 FBtr0081968 3 1 1 142 3R 4866917 4866935 AACACAAGCCTCATTACCA 59 4867200 4867218 GACACAGTCTGATTGTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9731 FBgn0037640 FBtr0081929 3 1 1 62 3R 4688228 4688246 GAATTCCCTCAGCAATTCG 58 4688184 4688203 TATATGAACCTTGGGTGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34301 FBgn0085330 FBtr0112497 2 1 1 74 3R 4599184 4599205 GATTTCCATTCCATACCTAAGC 58 4599240 4599258 CAGAAAGGTCTTCAGGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31453 FBgn0051453 FBtr0081898 1 1 1 66 3R 4386924 4386942 CATCTACGAGACAGGACTC 58 4386813 4386831 TTCAGAGAACATCAGTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 stck FBgn0020249 FBtr0081845,FBtr0081846,FBtr0081844 2 3 3 221 3R 4184861 4184937 GCTAACGATATGAACGAACTG 59 4185120 4185138 CTGATGATAGTGCGTCTCG 59 NA DesignRelaxed Drosophila melanogaster 50 ImpE3 FBgn0001255 FBtr0081819 3 1 1 60 3R 3855105 3855125 AACCTACTGACTAGCTATCTG 58 3855065 3855084 GCAGGTCAATATAGTATGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2747 FBgn0037541 FBtr0081818,FBtr0081817 2 2 2 127 3R 3844030 3844048 AATCGAATCGTTGTATGCG 58 3842719 3843939 TCTGAATATGGTTCTGCGG 59 NA Drosophila melanogaster 50 CG14463 FBgn0037535 FBtr0081783 1 1 1 108 3R 3826375 3826455 CCCTATTCAATAGTCAATCCC 57 3826525 3826543 CTGTAGGACTCTTCTGACC 58 NA Drosophila melanogaster 50 CG31473 FBgn0051473 FBtr0081749 3 1 1 84 3R 3638237 3638255 CCAGCCTATACGAATTCGG 59 3638303 3638321 CTTGGCATTTCAAGACACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31472 FBgn0051472 FBtr0081747 1 1 2 108 3R 3636465 3636483 AACAATTCGAAGGATGAGC 58 3636620 3636640 CTTCACCTTGATGTTATCCTC 58 NA DesignNoJunction Drosophila melanogaster 50 gfzf FBgn0053546 FBtr0114531,FBtr0091512 3 2 2 125 3R 2972597 2972676 GTACTCGAAGATGAATCCG 57 2972490 2972508 GGATATAGCGTTGAATCCG 57 NA Drosophila melanogaster 50 Antp FBgn0000095 FBtr0081648,FBtr0081652,FBtr0081651,FBtr0081649,FBtr0081650,FBtr0081647,FBtr0081656,FBtr0081654,FBtr0081653,FBtr0081655 3 10 11 256 3R 2734435 2734453 AGAACCATCACAACATGGG 59 2724211 2724230 TAGCTCTAGAGTCTGGTACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33324 FBgn0053324 FBtr0081727 1 1 1 63 3R 2273072 2273090 CACCATCACAAGTCATCCA 59 2273117 2273135 GACTGTCCATTGACCAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15594 FBgn0037421 FBtr0078604,FBtr0078603 3 2 2 61 3R 2113813 2113832 CTACAACCATCGCTATAACG 58 2113853 2113874 GAGGATTCGGTTTGTAATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1075 FBgn0037397 FBtr0078583 1 1 1 66 3R 1854303 1854426 GCGAACAACATGTTATTTCC 58 1854455 1854473 AAAGCTTCGGTAAGACAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078675,FBtr0078672 3 2 5 166 3R 1586675 1587377 ATTCGGACATCAAATCGTG 58 1586471 1586489 GGATGACATCTACCTTGCA 59 NA Drosophila melanogaster 50 Gel FBgn0010225 FBtr0078971,FBtr0078968,FBtr0078973,FBtr0078972,FBtr0078969 1 5 5 135 3R 66120 66138 TCAATACGAGCAAGAGGAC 59 66237 66319 AAAGTAAAGCTTTGCCGTG 59 NA Drosophila melanogaster 50 CG14641 FBgn0037220 FBtr0078985 2 1 1 60 3R 57928 57946 ACTAACACCTATAACCGGC 58 57886 57904 AAGTTTGGCACAGAATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pncr014:3L FBgn0046272 FBtr0091955 3 1 1 76 3L 14027883 14027901 CGATGTAAGACAGTTGTGG 58 14027825 14027843 ACTATTGCAATCTGCTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32385 FBgn0047205 FBtr0076899 3 1 1 172 3L 6970529 6970547 TCTACTCAATAAGCGCAGC 59 6970849 6970868 ACTTCCAGCTGAGTAATTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32462 FBgn0052462 FBtr0078579 1 1 1 67 3L 22845611 22845629 GATGCTACTCTACTGCGTG 59 22845562 22845580 TATAAAGCCGGAACTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mub FBgn0014362 FBtr0078469,FBtr0078468,FBtr0078470 2 3 4 154 3L 21914292 21914310 AGATTCGCCAAATATCCGG 59 21914425 21918298 AGCAGTCTCCATTGATATTCTC 59 NA Drosophila melanogaster 50 AP-2 FBgn0023417 FBtr0078419,FBtr0078418 2 2 2 222 3L 21602979 21604253 GACATGTCACCCAATTGTC 58 21604439 21605101 TTCATGCTCTTTATGAGCG 57 NA DesignRelaxed Drosophila melanogaster 50 Pros54 FBgn0015283 FBtr0078368 2 1 1 111 3L 21530466 21530544 GATGACTCTGTCCAACACC 59 21530619 21530637 GGTCAGGAGGTTTATCTCG 59 NA Drosophila melanogaster 50 CG7611 FBgn0037094 FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362 2 8 8 109 3L 21518809 21519094 ACCTTAAGGACCTAGAGCC 59 21519167 21519185 ATTGCCATCATCCAAATGC 59 NA Drosophila melanogaster 50 CG33054 FBgn0053054 FBtr0078316 1 1 2 90 3L 21190672 21190690 AATTGATGGCTTGGAATGG 58 21190542 21190561 TGCTATGAAGTAAATGGCTC 57 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 eRF1 FBgn0036974 FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177 2 6 6 81 3L 20344340 20344433 AATTTCTCAGGATACTGGCA 58 20344477 20344495 GAGAGTCTCTACAGAGCCA 59 NA Drosophila melanogaster 50 wnd FBgn0036896 FBtr0074963,FBtr0074965,FBtr0074964 3 3 3 120 3L 19620630 19620649 ATATCCGAATGGTGTACGAG 59 19620470 19620547 AGTTTCCGTTCTCGTTCTG 59 NA Drosophila melanogaster 50 Taf6 FBgn0010417 FBtr0074941 2 1 1 109 3L 19593329 19593350 CAAGAACTTCAATACCCTAACC 58 19593477 19593495 CAATAGAGCCGTAAAGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG3961 FBgn0036821 FBtr0075077,FBtr0075078 2 2 3 121 3L 18880248 18880266 ATTAACCCTAGGAAGCCTG 58 18874336 18880163 GTATTTGTTCTGGACCCTC 57 NA Drosophila melanogaster 50 Ugt FBgn0014075 FBtr0075064 2 1 1 60 3L 18868923 18868943 CAGTTCTCTACAGTATAGCGA 58 18868964 18868983 GACATCTTGAGCAGATTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14074 FBgn0036818 FBtr0075061 3 1 1 60 3L 18860005 18860025 TGGTCAATTACTAAACCCGAG 59 18860047 18860065 GGAGGAGTGTTCCTTAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rpr FBgn0011706 FBtr0075120 3 1 1 64 3L 18391231 18391249 GTCACAGTGGAGATTCCTG 59 18391185 18391204 GATGACATGAAGTGTACTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34253 FBgn0085282 FBtr0112447 3 1 1 60 3L 18079935 18079954 ATTACATTACCGTCGAAGGA 58 18079894 18079912 TCTTCCAAGTGATCGTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5290 FBgn0036772 FBtr0075152 3 1 1 92 3L 17904860 17904934 GAATCAAAGGTCCTGATTTGG 59 17904788 17904806 AAACTGCTCATACAGGGAG 58 NA Drosophila melanogaster 50 CG13725 FBgn0036708 FBtr0075248 3 1 1 60 3L 17318311 17318332 GGATTAAAGGTGGCTATTATCC 58 17318272 17318291 CAGCTTCTTCTCTAGTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lmpt FBgn0036672 FBtr0089452,FBtr0089453,FBtr0089458,FBtr0089459 3 4 8 133 3L 16890156 16890174 ACAGATCTCTTACCAGCTG 58 16890271 16890492 TGATGTAGGCTATGTCCAG 58 NA Drosophila melanogaster 50 CG13036 FBgn0036626 FBtr0075416 3 1 1 97 3L 16384420 16384438 GAGCATTCGATTATGGTGG 58 16384341 16384359 AGTAGAGCCGGAATTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GXIVsPLA2 FBgn0036545 FBtr0075509,FBtr0075508 3 2 2 65 3L 15948604 15948622 GAACTGCATATACCAGTGC 58 15948714 15948732 TTATTCTGAACCGCTCTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34451 FBgn0085480 FBtr0112757 1 1 1 120 3L 15682351 15682452 TACCCATGAGTCCTTTGTC 58 15682249 15682267 ATATCCCTCCCAATGAGTG 58 NA Drosophila melanogaster 50 mnd FBgn0002778 FBtr0075627,FBtr0114529,FBtr0075626 2 3 3 86 3L 14983805 14983823 TAATTGCCTGACACCTGTG 59 14983960 14983979 ATTAGTACGTAGACGTCCTC 58 NA DesignNoJunction Drosophila melanogaster 50 RpS4 FBgn0011284 FBtr0075885,FBtr0075884 2 2 2 162 3L 13035414 13035433 GTTAAGGTCGATGGAAAGGT 59 13035631 13036275 ACAACTTGTACTTGGCCTC 59 NA Drosophila melanogaster 50 RpS12 FBgn0014027 FBtr0075878,FBtr0075880 3 2 2 82 3L 13016618 13016843 GTTGATGTTGATGTTCCCTC 58 13016888 13016906 TTCTTCAAGACCTCCTGGA 59 NA Nonspecific Drosophila melanogaster 50 RpL10Ab FBgn0036213 FBtr0076034 3 1 3 94 3L 11816586 11816605 AATTTGAGTAGGTCTCCAGC 59 11816662 11816772 GGAATGTGCTTCAACAAGG 59 NA InUTR Drosophila melanogaster 50 Mob1 FBgn0036172 FBtr0089331,FBtr0089330,FBtr0089333,FBtr0089332 2 4 4 160 3L 11520315 11520333 CTAGTGGATCTTCCAGCTG 59 11518602 11518687 CATAAGTACGTTCTGTTGCC 58 NA Drosophila melanogaster 50 CG32066 FBgn0052066 FBtr0076278,FBtr0076277 1 2 2 155 3L 10634683 10634701 ATGATGTCCAGAACACGAC 59 10634480 10634498 CATGGTCGTAGAGGATCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32056 FBgn0052056 FBtr0076303,FBtr0076301,FBtr0076302 1 3 3 85 3L 10214550 10214568 TTCTTCGGCATCAATTTCC 58 10214222 10214501 AACATGGCATCTATGAGGA 58 NA Drosophila melanogaster 50 CG32043 FBgn0052043 FBtr0114368,FBtr0076465,FBtr0114367,FBtr0076466 3 4 4 108 3L 9463440 9463459 AAATTCGCTCGATATCTGGG 59 9463530 9463670 CCTTCGTGTAGATTTCCGT 59 NA Drosophila melanogaster 50 CG3911 FBgn0035992 FBtr0089879 3 1 1 221 3L 9432383 9432401 AGTTCTCCCTGGTATTCGA 59 9432082 9432100 GTATGACCTCCTCTAGACG 57 NA DesignNoJunction Drosophila melanogaster 50 smg FBgn0016070 FBtr0076549,FBtr0076550,FBtr0076551 3 3 3 135 3L 8986300 8986318 CAGTCAACTCAAGGACCTG 59 8986126 8986203 AGTCTTACCATTCCATCTTGG 59 NA Drosophila melanogaster 50 smg FBgn0016070 FBtr0076549,FBtr0076550,FBtr0076551 1 3 3 132 3L 8986300 8986318 CAGTCAACTCAAGGACCTG 59 8986129 8986205 CTTACCATTCCATCTTGGCT 59 NA Drosophila melanogaster 50 TrpA1 FBgn0035934 FBtr0113155 3 1 2 172 3L 8890196 8890214 CAGGACAAGTGCATTACCA 59 8889437 8889632 GTTACCATGGTGTTCACCA 59 NA Drosophila melanogaster 50 CG32026 FBgn0052026 FBtr0076584 1 1 1 60 3L 8830875 8830895 AATAGCCAAGGTATGACATCG 59 8830916 8830935 CTTTCGTTCGGTTCATACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gug FBgn0010825 FBtr0076619,FBtr0076618 2 2 4 81 3L 8463408 8463429 CCAAATATGCTTATACCTAGGG 57 8463468 8463540 CCTGTAAATACTGTAGTTGGTC 58 NA Drosophila melanogaster 50 Ect4 FBgn0085402 FBtr0112598,FBtr0112601,FBtr0112602,FBtr0112600 3 4 5 87 3L 8092628 8096003 GTCATTAAGGAAGCCCTCTC 59 8096053 8096071 TTTGCACCGTAATACTGGA 58 NA Drosophila melanogaster 50 MED4 FBgn0035754 FBtr0076889 1 1 1 130 3L 7243091 7243109 ATACGCACATCGGATTAGC 59 7242979 7242997 TGTTCTGCTCGGATTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 form3 FBgn0053556 FBtr0091533,FBtr0113469 2 2 2 92 3L 7112367 7112446 GTGCCCAATTACAAATTGC 58 7112500 7112520 CATAGAATTGATACAGGGCTC 57 NA DesignRelaxed Drosophila melanogaster 50 sgl FBgn0010851 FBtr0076938 2 1 1 176 3L 6954940 6954959 ATCTTCATCTCGGTGAACAC 59 6954300 6954318 TATGTGCATGATGCTCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Uev1A FBgn0035601 FBtr0077155 3 1 2 179 3L 5359234 5359252 CGAATACATCAAGTACCGG 57 5357297 5358048 TCTCGAATGGTGTTCTAGG 58 NA Drosophila melanogaster 50 Srp54k FBgn0010747 FBtr0077169 3 1 1 60 3L 5147367 5147386 TGACCAAGAATGTGAATCCA 59 5147409 5147427 ATCATCTTCGCTATCTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13704 FBgn0035583 FBtr0073353 1 1 1 143 3L 4899024 4899042 TACTTGGTGATATGCCTGG 58 4900437 4900455 TACACAAACGATGAGAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 1 9 15 80 3L 3083795 3084812 CTCGCCACTTATATGAATCG 58 3084852 3084873 CAAATTAAGTAGTGAGAACCCG 59 NA Drosophila melanogaster 50 msn FBgn0010909 FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956 3 5 5 104 3L 2556720 2556801 AGCAATAGAGATACGTTCCG 59 2556635 2556654 AATACTTTGTCGTTTCGCTC 58 NA Drosophila melanogaster 50 CG13810 FBgn0035313 FBtr0072870 1 1 1 229 3L 2186149 2186167 TTCTCCTTGGGTTACTACG 58 2186360 2186505 TAACTAACAGCCAGCTGTC 59 NA DesignRelaxed Drosophila melanogaster 50 zormin FBgn0052311 FBtr0110857,FBtr0110858,FBtr0089864,FBtr0110856 1 4 4 128 3L 2132574 2134108 GATTCCAAGTACGAATACGG 58 2132465 2132483 TACTATCACGTTGCAACTG 57 NA Drosophila melanogaster 50 CG1887 FBgn0035290 FBtr0113125,FBtr0072859,FBtr0113124 3 3 3 67 3L 1894438 1894614 AATACAACCGAAACTTGGAG 58 1894390 1894411 GTGTCACTTTAAGATTCAGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG8001 FBgn0035268 FBtr0072774 2 1 1 91 3L 1758644 1758723 GACCTGAAAGGAAACTCCC 59 1758776 1758796 GATGTCGAGGTCAATACTCTC 59 NA Drosophila melanogaster 50 CG13931 FBgn0035258 FBtr0072802 3 1 1 80 3L 1701475 1701493 TTCAATCACTACTCGCGTC 59 1701413 1701431 TAGGTCTACAAAGTCGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7879 FBgn0035235 FBtr0072827,FBtr0072826 2 2 2 205 3L 1564036 1564054 ATTCGAAACTTCTTCTCGG 57 1562881 1562899 CGAGCAGTCTCAATAACCT 59 NA DesignNoJunction Drosophila melanogaster 50 Ptp61F FBgn0003138 FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718 1 4 4 143 3L 1346059 1346077 GAAACAGATCAAGTGCCAC 59 1345856 1345953 TCGGTTAATTTGAACCATCG 58 NA Drosophila melanogaster 50 CG2469 FBgn0035205 FBtr0072668,FBtr0072669 2 2 2 94 3L 1308864 1308885 GGCCAGATGTATATTTATCGAG 58 1308997 1309015 TTCATGGTCTCGTAGTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32333 FBgn0052333 FBtr0100256,FBtr0072662 2 2 2 253 3L 1285102 1287941 ATCTGCTAGTTGACAGTCG 59 1288158 1288176 ATGGAAGTAGTCGAACAGC 59 NA DesignRelaxed Drosophila melanogaster 50 Ptpmeg FBgn0035133 FBtr0072545,FBtr0072542,FBtr0072544,FBtr0072543 3 4 4 80 3L 354436 354509 CATATCACCATATGACTGCAC 58 354551 354569 ATGTTTACGTAGTTGGCGT 59 NA Drosophila melanogaster 50 CG34413 FBgn0085442 FBtr0112685,FBtr0112684,FBtr0112683,FBtr0112686 2 4 4 80 2R 20770531 20770606 TTCCTGCAAGTGATAACGA 58 20770649 20770668 AAAGTTCACTAGGATAGGCG 59 NA Drosophila melanogaster 50 CG3209 FBgn0034971 FBtr0072178 1 1 2 111 2R 19958425 19958446 CCACAATAAGCAATATAAGCCC 59 19958517 19959522 CCACACTACCAAAGAGTAGG 59 NA Drosophila melanogaster 50 CG4324 FBgn0034956 FBtr0114534,FBtr0072197 1 2 2 114 2R 19903665 19903743 GTTCCACAGTCAGTTACCT 58 19903511 19903529 CTAGGACCACTTCAAAGCA 59 NA Drosophila melanogaster 50 CG4019 FBgn0034885 FBtr0072102,FBtr0072105,FBtr0072104,FBtr0072103 1 4 4 213 2R 19495764 19495782 TCGAGTTCGTAATCACCTC 58 19495489 19495507 TAGATCCAGTTGCTCTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG9826 FBgn0034784 FBtr0071895,FBtr0071894 3 2 2 60 2R 18729076 18729095 CAAGTACATCGAATCTTCGC 59 18729118 18729136 AATTGGTATGGTACGACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4269 FBgn0034741 FBtr0071854 1 1 1 69 2R 18487631 18487649 ATTCGTCTATCCCATGTGC 59 18487682 18487700 GAAGTACACATACTCCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6018 FBgn0034736 FBtr0071835 1 1 1 60 2R 18438339 18438357 GGACTGAAGGACCAAATCC 59 18438378 18438399 CATTGAAACTGGCTATGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4386 FBgn0034661 FBtr0071743 3 1 1 60 2R 17687893 17687911 TATGTTGCTATATGGCGGA 58 17687851 17687869 CAGGAATTGATCGTTGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PTP-ER FBgn0016641 FBtr0071686 3 1 1 60 2R 17509896 17509915 TCAAATCACAGTATCACCCT 58 17509855 17509873 AGTTTAGATCTCCACACGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rgk3 FBgn0085426 FBtr0112647,FBtr0112646 1 2 2 88 2R 17159712 17159730 CATGAACATGCATCACCTG 59 17159782 17163660 TGATGATACCTCCCTTGGA 59 NA Nonspecific Drosophila melanogaster 50 CG15653 FBgn0034578 FBtr0071545 3 1 1 61 2R 16947878 16947898 GCTGTGATGTACATGAAATGG 59 16947837 16947855 AGTTTGTAGTACTCTGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494 2 7 7 151 2R 15418201 15419688 TATTGAGGGTAAAGGCACC 58 15418068 15418088 CTCAATTGTAGATGTCCACCT 59 NA Drosophila melanogaster 50 CG15105 FBgn0034412 FBtr0086572,FBtr0114622,FBtr0086573 2 3 3 97 2R 14894067 14895103 TAGCCGATAGATACAATCATCG 59 14895161 14895179 ATTGAATTTGCCATCTGCG 59 NA Drosophila melanogaster 50 CG15082 FBgn0034397 FBtr0086617 2 1 1 123 2R 14720045 14720063 GAAGTCAAGGCTAAGAGGG 59 14720150 14720168 TATATCGGAGTGAGTCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6484 FBgn0034247 FBtr0086903 3 1 1 60 2R 13471101 13471119 ATTCATTCTTGGCATGTGC 59 13471059 13471077 CTCTGTACAGTACATGGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30460 FBgn0050460 FBtr0087011,FBtr0087009,FBtr0087010,FBtr0113378 3 4 5 103 2R 12959348 12959484 AATCTGAAGACCAAGAGATCC 59 12959265 12959283 GACATCAGGTTTGGTTTGG 58 NA Drosophila melanogaster 50 Acp53C14a FBgn0034152 FBtr0087082 3 1 1 60 2R 12635892 12635910 CACTATCTGCGATGTTTGG 58 12635850 12635870 TAGAGTTCTCGATCATTAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 csul FBgn0015925 FBtr0089872,FBtr0089871 2 2 2 89 2R 12153286 12153304 CAAACTCTATCAGGATGCC 57 12153356 12153435 AGTAGCATTACAACTGTCAG 57 NA Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 3 5 7 82 2R 11836642 11836721 TTTGCTACGTGCTACTCTC 59 11836578 11836599 ATCCGCTCTAGTTATATTCGAG 59 NA Drosophila melanogaster 50 hbs FBgn0029082 FBtr0087414,FBtr0087413 2 2 2 129 2R 10924646 10924866 TTTGACTGTCCTGTATGCT 58 10924959 10924977 TATGGACCAGCTAATTCGG 58 NA Drosophila melanogaster 50 CG7639 FBgn0033989 FBtr0087424 2 1 2 166 2R 10876202 10876280 TGGTTGGAGTGGATTTGAC 59 10876054 10876072 GAATACGTTTCCATCCCGA 59 NA Drosophila melanogaster 50 aPKC FBgn0022131 FBtr0110996,FBtr0110997,FBtr0087426 3 3 6 101 2R 10849144 10849164 GCCAGATTATCATTACCACCA 59 10849002 10849081 TGGTAAATGGCTGATCCAG 59 NA Drosophila melanogaster 50 Cyp6a20 FBgn0033980 FBtr0087454 3 1 1 60 2R 10769904 10769922 CTAAGACCGTACTGATTCG 57 10769946 10769964 TCGTTATGAAATACTCCGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12863 FBgn0033948 FBtr0087500 3 1 1 99 2R 10508178 10508197 CTGTCTGTACAATATGTGCA 57 10508043 10508061 TGTTACAATCACCAGTCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG8485 FBgn0033915 FBtr0087572,FBtr0087570,FBtr0087571,FBtr0087569 3 4 4 92 2R 10126046 10126142 GTTCACAGGGATCTAAAGC 57 10125972 10125991 CAAGAACTTGTTGCTAAACC 57 NA Drosophila melanogaster 50 mam FBgn0002643 FBtr0087597,FBtr0087596 3 2 3 95 2R 9928271 9943272 CCCATGGTATTCAGGTGTC 59 9943331 9943349 TGAAGAAGACACCTTGCTG 59 NA Nonspecific Drosophila melanogaster 50 CG33155 FBgn0053155 FBtr0100453 3 1 3 100 2R 9842101 9842119 GCAGTGAAGTATTCACACC 58 9842183 9842201 AAAGTCTACGGTGAGTGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG6280 FBgn0033866 FBtr0087628 2 1 1 182 2R 9643168 9643186 ATCGAAGGTCCAAACTTGG 59 9643453 9643471 GTAACCATGTCCATTGGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG30487 FBgn0050487 FBtr0087802 2 1 1 60 2R 8825295 8825313 TTCTCTAATGGAGGCACAG 58 8825253 8825274 GCTCTTCGAAATTAACTTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17574 FBgn0033777 FBtr0087816 2 1 4 164 2R 8756493 8756511 TTCCTCATCATGAGTTGCT 58 8737633 8737651 AGTTACGTAGGCATTGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8818 FBgn0033751 FBtr0087941 2 1 1 207 2R 8405343 8405361 CAAGAGCTAGTGGAGAGGA 59 8405040 8405058 ATTCACTGCAGGATTTGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG8834 FBgn0033733 FBtr0113073,FBtr0087954 3 2 2 82 2R 8309523 8309597 GTGCTAGATGATGCAACCT 59 8309459 8309480 TTATCGTACTCTTGTCCATCAC 59 NA Drosophila melanogaster 50 SIP2 FBgn0061197 FBtr0089670,FBtr0089669,FBtr0089671,FBtr0089668 1 4 4 95 2R 8193372 8193449 ACAAAGCTACATGGTCTCG 59 8193295 8193313 TGAGCCTACCTTTGTTTGG 59 NA Drosophila melanogaster 50 Rep1 FBgn0024732 FBtr0087978 2 1 1 261 2R 7935685 7935986 CATTGGATCGATCCCACTC 59 7936211 7936229 CCATAAACTCCTTTCCCGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG30015 FBgn0050015 FBtr0088243,FBtr0113356,FBtr0113357,FBtr0088242 2 4 4 159 2R 6730710 6730728 TCGGATATACTGCGATCAC 58 6730477 6730588 GAATGGAAGTCTCCAATGTC 58 NA Drosophila melanogaster 50 CG12936 FBgn0033549 FBtr0088222 3 1 1 60 2R 6699390 6699409 TGATCGATCATTTCTCCAGC 59 6699432 6699450 TTGATCTTCAAATCGGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CAP FBgn0033504 FBtr0088342,FBtr0088347,FBtr0088341,FBtr0088338,FBtr0088340,FBtr0088343,FBtr0088339 2 7 10 83 2R 6182437 6182455 GTCATTCGTCTGTTTCCGA 59 6182825 6183262 TCGATTGTTCTAGATTCCCG 59 NA Drosophila melanogaster 50 CG12911 FBgn0033501 FBtr0088336 1 1 1 80 2R 6146892 6146910 ATATGGATACGACAACCGG 58 6146954 6147036 CGATCGTAGTAGCGATCTC 59 NA Drosophila melanogaster 50 CG12744 FBgn0033459 FBtr0088378 1 1 2 80 2R 5763453 5763529 CTTCTTCAATCCGAATCTCTG 58 5763571 5763589 CTTCGCAAGACATATCCTG 57 NA InUTR Drosophila melanogaster 50 CG18446 FBgn0033458 FBtr0088376 1 1 1 60 2R 5759619 5759637 TAACACCCTTTGTTCAGTC 57 5759661 5759679 AATAAGTGCTGATCTGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trpl FBgn0005614 FBtr0088471,FBtr0088472,FBtr0088473 2 3 3 87 2R 5652140 5652158 ATTCCCAAATAGGTCGCTG 59 5652208 5652286 ATTATAAGCCTCTTGGCCTC 59 NA Drosophila melanogaster 50 ltd FBgn0002567 FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934 2 5 5 110 2R 5066194 5066212 ATGGATGAGTATGTGAGGG 58 5066041 5066123 GATGAGTATCTTATTCACGAGG 57 NA Drosophila melanogaster 50 Su(var)2-10 FBgn0003612 FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578 1 9 9 80 2R 5005945 5006020 TCATAGATGGCTACTTCCAG 58 5006060 5006081 CATCCTGATGAAGTTGAATCTC 58 NA Drosophila melanogaster 50 Mys45A FBgn0033379 FBtr0088628 3 1 1 60 2R 5000759 5000777 TCCGCTGATATCATGATCG 59 5000717 5000737 TCACCGTCTTAGAATCATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8078 FBgn0033375 FBtr0088631 2 1 1 280 2R 4985933 4985951 ACATTATCTGCAAGTCGCA 59 4985563 4985581 ATATCCAGTGATGCCTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13743 FBgn0033368 FBtr0088662 3 1 1 105 2R 4936033 4937393 TTATAAGGTGACGGACACG 59 4935817 4935835 GAAGGTGTTGTGATGACAC 58 NA Drosophila melanogaster 50 CG30354 FBgn0050354 FBtr0088702 1 1 1 60 2R 4565030 4565048 AGGAATTGTTCGACTTCGT 59 4565072 4565090 TTCGAGAAGAGACTGTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8726 FBgn0033244 FBtr0088873,FBtr0088874 3 2 2 81 2R 3858089 3858107 ACAAGTGGCTACATATGGG 59 3857969 3858045 ATGTAGATGACCATATGCGT 58 NA Drosophila melanogaster 50 CG12825 FBgn0033221 FBtr0088829 2 1 1 136 2R 3677184 3677202 ATCTTCGGACCATTGATGG 59 3677362 3677380 ATGAACTCCTTCTTGTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12107 FBgn0033209 FBtr0088924 3 1 1 111 2R 3562262 3562280 GTATTCGGCATCTTTCTGG 58 3562425 3562443 TTATGGCGTACAGGTAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG30492 FBgn0050492 FBtr0088917 2 1 6 132 2R 3525867 3526110 GGTGAAATTAGATCTGCCG 58 3526206 3526224 GATGGTCTCGATGAGACTG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0089016,FBtr0111061,FBtr0089017,FBtr0089019,FBtr0111074,FBtr0089018 1 6 60 122 2R 3219876 3231793 CAAGTTAATGTACCTCCCAG 57 3219773 3219792 TTTCTTCCATGTAACTTGGG 57 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111064,FBtr0111057,FBtr0111100 2 3 60 83 2R 3247002 3247020 CACCTTAAGGGAAAGAGCA 59 3236471 3246958 CTTGTACCATCTAAAGAAAGGC 59 NA Drosophila melanogaster 50 CG30385 FBgn0050385 FBtr0089047 1 1 1 60 2R 3069404 3069423 CCAATCTACAGTGACGATCC 59 3069446 3069464 AATTCCATTGATGCGAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33558 FBgn0053558 FBtr0086193,FBtr0113470 2 2 2 94 2R 2821425 2821581 TATCACGAAAGAGCTGTCC 59 2821349 2821367 ACATGTTCACATAGGTGGG 59 NA Drosophila melanogaster 50 tRNA:CR31669 FBgn0051669 FBtr0077860 1 1 1 60 2L 2013224 2013243 TGGTGTAATGGTTAGCACTC 59 2013183 2013201 TCCACCGAGATTTGAACTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Spf45 FBgn0086683 FBtr0111239,FBtr0111240 3 2 3 160 2L 22960010 22960028 TGACGAAGAATTGGAACCC 59 22959807 22959888 CCACTACAGCTTTAATTGCAC 59 NA Drosophila melanogaster 50 Spf45 FBgn0086683 FBtr0111239,FBtr0111241,FBtr0111240 1 3 3 60 2L 22959896 22959916 ATATTCGTAGAGTTTAGGCGG 59 22959795 22959815 GTCCATTAAGGTCCACTACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL5 FBgn0064225 FBtr0111129,FBtr0111128,FBtr0111131,FBtr0111130,FBtr0111132 3 5 5 101 2L 22428914 22428932 CAGTACAGATCGCCTATGC 59 22428771 22428849 AGTTGGTCAATCCAACCTG 59 NA Drosophila melanogaster 50 CG31700 FBgn0051700 FBtr0085933 3 1 1 101 2L 22066968 22066986 AGGACAGTAAGGACTACCG 59 22069218 22069236 TTGTCCTTAATGGCATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ac3 FBgn0023416 FBtr0085897 2 1 2 86 2L 21644210 21646603 TTATCTGCAGGGTAAGTCC 58 21646652 21646671 TCTACAGCAGATGAATCCTG 58 NA Drosophila melanogaster 50 CG2201 FBgn0032955 FBtr0100510,FBtr0085921,FBtr0085922,FBtr0100511,FBtr0085923 2 5 5 85 2L 21616233 21616254 GTAATATTCTGATGCGACAACC 59 21615664 21616187 GTCGAAGTTGGATCTCAGG 59 NA Drosophila melanogaster 50 Hr39 FBgn0010229 FBtr0081481,FBtr0081480,FBtr0081479 3 3 4 154 2L 21256008 21256026 AAGATAACCCTATCGCAGG 58 21257042 21257115 AACTCTGTCGTATCTGACTG 58 NA Drosophila melanogaster 50 CG9243 FBgn0032926 FBtr0110945 1 1 2 146 2L 21166903 21166921 GAACTGGAGAGGATTTCCG 59 21166439 21166457 ATTCCCGAAATAGTCCTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9265 FBgn0032910 FBtr0081507 3 1 1 83 2L 21060033 21062276 AGACGAAGTTGGTGATATCAC 59 21059970 21059988 AGATGGTCAGGTGTATCCA 59 NA Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445 2 8 8 80 2L 20877198 20877217 GTTCTGCAAGAAGATACCAG 58 20877072 20877156 ATATACTGGGTACTCAGTCC 57 NA Drosophila melanogaster 50 CG31674 FBgn0051674 FBtr0081423 3 1 1 71 2L 20832404 20832422 AGATGTTATGGATCCGGAG 58 20832456 20832674 GGAGTAACCACAACATTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG13958 FBgn0032825 FBtr0081295 1 1 1 60 2L 19828687 19828705 AACTATGTGCTCTTCAACC 57 19828729 19828747 TGCGTATCTTGTACTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10462 FBgn0032815 FBtr0100351,FBtr0100352,FBtr0081325 1 3 3 90 2L 19733222 19733240 GACAAACGTTTCCGAACTC 59 19733057 19733169 CTAACGAGCATATCTTGCAC 58 NA Drosophila melanogaster 50 tj FBgn0000964 FBtr0081239 3 1 1 153 2L 19464794 19464812 TCAGGAGTTTGATCTGCAC 59 19464928 19464947 GATTGTCGTCCATTTAACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17549 FBgn0032774 FBtr0081221,FBtr0081220,FBtr0081219 3 3 3 119 2L 19388088 19388108 CATCGATCCGTATCTATTCCA 58 19387719 19387737 ACTAGATTGTCGTGGTAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG31751 FBgn0086909 FBtr0081092,FBtr0081093 1 2 2 70 2L 18682371 18682389 CAGATGCTGCTTTACTTGG 58 18682478 18682496 TACTTTCCTGTTGCATTGG 57 NA DesignNoJunction Drosophila melanogaster 50 Fas3 FBgn0000636 FBtr0112805 1 1 4 236 2L 18384701 18384719 ATCTACAATCTGAGGGCCA 59 18387311 18388394 CTTGTCGATTTGAGTTTCGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG15153 FBgn0032663 FBtr0081045 1 1 1 71 2L 18091629 18091648 TATCCAGACTTTCACATCGC 59 18091577 18091595 TAGTACTGATCACAGCCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dif FBgn0011274 FBtr0081008,FBtr0081009 2 2 2 80 2L 17417624 17417642 AGCTGAAACTAGTGAGACC 58 17415380 17417580 TTAGGAGTTCTGGATTCGG 58 NA Drosophila melanogaster 50 CG17912 FBgn0032600 FBtr0080893,FBtr0113041 3 2 2 176 2L 16744378 16744700 GCGTACAGTAATGCTACCA 59 16744837 16744858 CTGTGGATGCATAATCTTTGTG 59 NA Drosophila melanogaster 50 VhaSFD FBgn0027779 FBtr0080941,FBtr0080940,FBtr0080942 2 3 3 122 2L 16724785 16724867 AACTTCCAGGTGCAATACC 59 16724681 16724700 ACAATCGCTGAGGATATCAG 59 NA Drosophila melanogaster 50 cact FBgn0000250 FBtr0080844,FBtr0080845,FBtr0080847 2 3 4 127 2L 16314551 16314569 CGTGCATCATGAACAAGTC 59 16313442 16314462 ATCGTACATCTTCGTATCGTC 59 NA Drosophila melanogaster 50 Ca-alpha1D FBgn0001991 FBtr0090004 1 1 4 88 2L 16181896 16182782 AGTACAACTCTTTAAGGGCA 58 16182893 16182912 CATAGACCAGATAGGTTCCG 59 NA Drosophila melanogaster 50 CG31735 FBgn0051735 FBtr0080791,FBtr0080790 2 2 2 76 2L 15896617 15896636 TTTAAGAGAAACCCATCTGC 57 15896768 15896789 GCAGTTCTTGGTAGTTTATGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CycE FBgn0010382 FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775 2 5 5 97 2L 15729492 15729577 TACATTTAGTCGGGAGATGG 58 15729414 15729432 AGATCACTCGGAAGAATGG 58 NA Drosophila melanogaster 50 CG32971 FBgn0052971 FBtr0080621,FBtr0114463,FBtr0114462 1 3 3 60 2L 14277528 14277548 CTAAAGGATAACGTCCTAAGC 57 14277567 14277588 GGGAAACTAATTTAAGGAGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 smi35A FBgn0016930 FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289 2 5 5 90 2L 14195795 14195814 CGGATGGATCTCATAATGTC 57 14189225 14195742 AGGTTCAAGCTCATTAGCT 58 NA Drosophila melanogaster 50 CG32972 FBgn0028905 FBtr0080599,FBtr0080600 3 2 2 132 2L 14164510 14164589 GAATGATGTGACTCTCACCA 59 14164397 14164415 CTGCAGGATATCTCCAACG 59 NA Drosophila melanogaster 50 rk FBgn0003255 FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610 2 4 5 85 2L 13991706 13992947 GTGGTCGTCCTAGATTTGG 59 13991056 13991657 GTTAGCTCCTCCAGATTGG 59 NA Drosophila melanogaster 50 Ance FBgn0012037 FBtr0080553,FBtr0080552 1 2 2 85 2L 13908583 13908661 TATCTGAGATACTTGGTCTCCT 59 13908707 13908725 TTGTCGGGATCATATTGGC 59 NA Drosophila melanogaster 50 Hsp60D FBgn0032525 FBtr0080517,FBtr0080518 1 2 2 60 2L 13447731 13447750 CTCATCACTAAACAACCCAC 58 13447690 13447708 CAAGATCCTTGGTGACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6043 FBgn0032497 FBtr0089911 3 1 5 91 2L 13267890 13267909 TATATGGTTCGTCAGGATCG 58 13267963 13271304 TGTCCATACGACAATTCCA 58 NA Drosophila melanogaster 50 CG6043 FBgn0032497 FBtr0114471 1 1 5 148 2L 13274369 13276257 CTTTGGTGGTAATGGAGTC 57 13276455 13276473 ATGATCGACTGGGTATAGC 58 NA Drosophila melanogaster 50 CG15480 FBgn0032489 FBtr0080482 3 1 1 152 2L 13224950 13224968 CATTGTACCATCACCACTC 57 13224816 13224834 GTAGCATGTAAGCGTATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090023,FBtr0090018 2 2 17 197 2L 12726932 12726951 TTATATCAAGAGCGTTGGCA 59 12727111 12729197 AAGTACGAGGTAACTTGGC 59 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090023,FBtr0090026,FBtr0090022,FBtr0090029,FBtr0090025,FBtr0090014,FBtr0090024 2 8 17 185 2L 12724032 12724051 CGTGTTAAGTTGATGAACGA 58 12724334 12724773 TAATGAAACCAGGAACGGT 58 NA Drosophila melanogaster 50 CG33695 FBgn0052831 FBtr0091682,FBtr0091679,FBtr0091683 1 3 5 179 2L 11278648 11278666 AGCCTAAGCATCAAGAACC 59 11278890 11278908 GAATACTTGAGGAGGTGGC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG6287 FBgn0032350 FBtr0080222 1 1 1 137 2L 11152249 11152267 TTGGTTACGATCCCATCAC 59 11152018 11152150 ATATGAGATTTCTGGTGGCTG 59 NA Drosophila melanogaster 50 CG17140 FBgn0032306 FBtr0100838,FBtr0100837 2 2 2 60 2L 10843460 10843478 GGGCTACAATAATGGGAGG 59 10843360 10843380 TCGAAGATCCTCGAAATTCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Nos FBgn0011676 FBtr0100487,FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100489,FBtr0100486 2 8 10 81 2L 10806032 10806052 AGCTACAGAAGGATCAAATCC 59 10805730 10805989 TCCTGCACATATGTCTTCG 59 NA Drosophila melanogaster 50 CG6737 FBgn0032294 FBtr0080120 2 1 1 65 2L 10736455 10736473 TCTTTATCGGCATGATCCT 58 10736408 10736426 CAATGATCAGGCCGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31716 FBgn0051716 FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012 1 6 6 83 2L 10400605 10400623 AAGTCGAAGGATGCTTACC 59 10400669 10400743 ATAGCGCATCTGTTACTCTG 59 NA Drosophila melanogaster 50 CG13138 FBgn0032211 FBtr0080066,FBtr0080067 2 2 2 60 2L 10300312 10300332 CCATTCTCCATACCATTTCAG 58 10300272 10300292 GTATAGGACTTTGAAAGGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rsf1 FBgn0011305 FBtr0080079 3 1 1 88 2L 10263366 10263384 TGTATGTCGGCAATCTGAC 59 10263296 10263314 TATCCACACCGAATTCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15828 FBgn0032136 FBtr0079843 3 1 2 157 2L 9643295 9643402 TATAAAGTGATGCAGACCCTG 59 9643519 9643539 ATAATCTGCTGAACTCGAAGG 59 NA Drosophila melanogaster 50 CG12439 FBgn0032094 FBtr0079767 3 1 1 60 2L 9077470 9077488 TTCACCGAAATAATCCTGC 57 9077509 9077530 TAAATCGATAGGTCATCCTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31897 FBgn0051897 FBtr0079673 1 1 1 60 2L 8445313 8445331 CAGGACAAGACTCCTACAG 58 8445353 8445373 GCTCCATTCGTTTCTTATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8451 FBgn0031998 FBtr0079637 2 1 1 83 2L 8202398 8202477 TCTGGATGAGATTCTGTTTCTG 59 8202278 8202296 ACATGGAGATTAATGCCCG 59 NA Drosophila melanogaster 50 CG7231 FBgn0031968 FBtr0079530 1 1 3 143 2L 7984801 7985561 CTACTATTTGTGCTCGTGG 57 7985666 7985686 TACCTTCATCATATCCGACTG 58 NA Drosophila melanogaster 50 CG13796 FBgn0031939 FBtr0114496,FBtr0079504,FBtr0079503,FBtr0079505 2 4 4 81 2L 7728559 7728579 GTGTGCCTTACTCATATTACC 58 7728434 7728516 CAACGTGATCCTCAAAGTG 58 NA Drosophila melanogaster 50 Myo28B1 FBgn0040299 FBtr0079474,FBtr0079476,FBtr0079475,FBtr0079473 2 4 4 90 2L 7682050 7682123 TCTTCAAGATGGAACAGGA 57 7682176 7682195 ATTAGATCGAGGATTTGCTG 57 NA Drosophila melanogaster 50 CG4496 FBgn0031894 FBtr0079419 1 1 1 88 2L 7186888 7186906 TGTACGAATGTCCTGACTG 59 7186753 7186836 GAATGGTCTTTCACCTGTG 58 NA Drosophila melanogaster 50 Mnn1 FBgn0031885 FBtr0079402,FBtr0110978,FBtr0079401 3 3 3 113 2L 7057576 7057594 ACATCGAGCTGTCTTTGAC 59 7057670 7057878 TGATGTCATTTCCACCTGTC 59 NA Drosophila melanogaster 50 CG18304 FBgn0031869 FBtr0079367 2 1 1 81 2L 6933469 6933487 TAACTCCTCCAACAATGGC 59 6933326 6933425 GCGCCAAATATTCTGATCTC 59 NA Drosophila melanogaster 50 CG11322 FBgn0031856 FBtr0079387 3 1 1 60 2L 6758241 6758259 CTACTACTGCCAGTTCGAG 59 6758199 6758217 CCAATCGTACATCTCTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr FBgn0015623 FBtr0079250 1 1 2 98 2L 6342339 6342734 TATTCCATACAACCCACCA 57 6342796 6342814 ATAGAAGACGACCAGACTG 58 NA Drosophila melanogaster 50 Pez FBgn0031799 FBtr0079284 3 1 1 93 2L 6333549 6333567 CTTCTTCACTGTCTGGAGG 59 6333412 6333492 TATCCAGGTCCTCATTGTG 58 NA Drosophila melanogaster 50 mtm FBgn0025742 FBtr0079223 1 1 1 60 2L 6035375 6035394 AGTTCAACAACGCATTTGAG 59 6035334 6035352 TACAGATGATCCACGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11149 FBgn0031732 FBtr0079168,FBtr0079169 3 2 2 154 2L 5719427 5719525 AATGGTGGTATCACGTTGG 59 5719291 5719309 GGAAGTACACGTGAAAGGA 59 NA Drosophila melanogaster 50 CG17221 FBgn0031500 FBtr0077654,FBtr0077655 1 2 2 70 2L 3041355 3041376 CCAGGGAATTCAATTTCTACAG 59 3041462 3041480 CGTAGCTGCTATCGATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3605 FBgn0031493 FBtr0077669 1 1 1 80 2L 3027277 3027354 CATATTGGACCTTGATAATGGC 59 3027218 3027236 TCTTCTGACTCCGATTCCA 59 NA Drosophila melanogaster 50 oho23B FBgn0015521 FBtr0077621,FBtr0077622,FBtr0077623 3 3 4 164 2L 2856560 2856643 CATTACCAAGAACTTCTAAGCG 59 2856766 2856786 AGCTAATCCTGGTTCTAACTG 59 NA InUTR Drosophila melanogaster 50 Drp1 FBgn0026479 FBtr0077744 3 1 1 113 2L 2583311 2583544 CAGATCTTAAGACTCGCGT 59 2583216 2583234 ACTTCGTGATGATCTGCAG 59 NA Drosophila melanogaster 50 CG17237 FBgn0031410 FBtr0077801 2 1 1 61 2L 2288675 2288693 GTAGGATCAACAAAGACGG 57 2288632 2288653 CCCATAGATAATGTCTTGAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7082 FBgn0031401 FBtr0077839,FBtr0077836,FBtr0077838,FBtr0077837 1 4 4 72 2L 2224635 2224653 CTATTACGTGGCCAAAGTC 58 2224747 2224765 ATCAGCTTTCTCCAATGTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG7289 FBgn0031379 FBtr0077815 3 1 1 171 2L 1984074 1984092 TACATAACCGAGGACAAGC 59 1984288 1984307 CTATGATTATTGCGCACACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33922 FBgn0053922 FBtr0091926 1 1 1 128 2L 1343758 1343776 TAACGTAACCGTAGATGGC 59 1343588 1343666 ATGATATCGTGGTCGTAGG 58 NA Drosophila melanogaster 50 Ipk2 FBgn0031267 FBtr0078074 1 1 1 69 2L 573416 573434 CTATGCCAGTTCTTTGCTC 58 573365 573383 GTTTATCAACGGCTTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0269 FBgn0029067 FBtr0077226 1 1 1 80 X 21192724 21192742 ATACTACAGACAGCACTGC 59 21192539 21192681 ATCCTATTTAGGTCACTGCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG32523 FBgn0052523 FBtr0077183 3 1 1 69 X 21089123 21089141 GTCATAATCTCGGCCACTC 59 21089174 21089259 CCGGAACTACATCATTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089658,FBtr0089660,FBtr0089657,FBtr0089661,FBtr0089659,FBtr0089662,FBtr0089663 3 7 7 83 X 17844790 17845235 CTAACTGTCAGGTTCCTCG 59 17844725 17844744 AATGATGGCGATTATGTCGA 59 NA Drosophila melanogaster 50 unc-4 FBgn0024184 FBtr0074460 3 1 1 216 X 17663629 17663647 AGGATCTAATGAGGATGGC 58 17670308 17670466 TCGATTCTGGAACCATACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32559 FBgn0052559 FBtr0074458 1 1 1 99 X 17629296 17629574 ACTGTGAATCTTCAGATTCG 57 17629636 17629654 TCTCGATGATGTCACATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8568 FBgn0030841 FBtr0074436 3 1 1 82 X 17345164 17346089 ATTCGATCAGAAAGTGTGC 58 17345100 17345118 GCCTGCCATTAAGAAAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8916 FBgn0030707 FBtr0074126 3 1 1 83 X 15818119 15818138 GGTTTCGCTACAGAATTCAC 59 15818181 15818260 TACGATGGATCGTTATATGTGG 59 NA Drosophila melanogaster 50 CG2061 FBgn0027498 FBtr0073429 1 1 3 188 X 10986739 10986819 AACTCGTATTTCGCTTCGT 59 10987088 10987106 AAGGGATTCTTCAGGTAGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 ras FBgn0003204 FBtr0071496,FBtr0071494,FBtr0071495 2 3 3 90 X 10641988 10642006 TCTACCCTATTTGGAGTGC 58 10642057 10642149 GCCATTATAGATCATATCCCTC 57 NA Drosophila melanogaster 50 His3.3B FBgn0004828 FBtr0071345,FBtr0071347,FBtr0071346 3 3 3 219 X 9048446 9048465 AGGATTTCAAGACCGATCTG 59 9048107 9048125 ACGACAGTGATCGAATCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12661 FBgn0030071 FBtr0071265 1 1 1 60 X 8817389 8817408 GAGAATCGCCTAGAGAAGTG 59 8817348 8817367 CCAAGCTATAATCGGATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tom40 FBgn0016041 FBtr0071074,FBtr0071073 3 2 2 126 X 7632815 7632934 CGAATCTGGTCTTCAGAGG 59 7633024 7633042 AAGTTGTTCTTCACGTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG5062 FBgn0029747 FBtr0070759 2 1 1 127 X 5075716 5075735 ATTTCCACGACATTGATGAG 58 5075544 5075626 GTGTAGTACCTGCAATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3556 FBgn0029708 FBtr0070674 3 1 1 131 X 4427043 4427061 CTTCTTTAAGGCCATGACC 58 4427224 4427305 CAGTAGTGATACCCTCGAG 58 NA Drosophila melanogaster 50 mei-9 FBgn0002707 FBtr0070656 3 1 1 125 X 4211095 4211113 TGTGACCAAATCATTCCAC 57 4210928 4211007 ATGGTGGAGATCATTAAGCT 58 NA Drosophila melanogaster 50 Csat FBgn0024994 FBtr0070501 1 1 1 242 X 2597434 2597549 ATAGCATACACATGAACGC 57 2596698 2596716 CAATGATGGTCTTGTGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14816 FBgn0023517 FBtr0070366 3 1 1 60 X 1766850 1766870 CAAGAGAAGGAGAGCTATACC 59 1766810 1766828 AGACAAAGTAGCGGATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pck FBgn0013720 FBtr0070256,FBtr0070255,FBtr0100198 3 3 3 135 X 1365511 1365529 CCTTCATCATCGTGTTCCT 59 1365628 1365700 ATGAACAGAGACGAGATGG 58 NA Drosophila melanogaster 50 sphinx FBgn0083990 FBtr0111045 3 1 3 61 4 996516 997393 GGGATGTACCAAACAAGTG 58 997415 997436 TCGATACTGACAGTATGTACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-3091a FBgn0082979 FBtr0113579 1 1 1 69 3R 1422493 1422512 CTGGTACGTAATTGCAAGAG 58 1422443 1422461 ACGTTGTTCAGTGAATGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31002 FBgn0051002 FBtr0085813 1 1 1 60 3R 27220767 27220787 ATACACGATATTCCAGTTCCC 59 27220667 27220745 ATGCAATCCTAAGGACCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31126 FBgn0051126 FBtr0084663 2 1 1 130 3R 20485556 20485574 GAAGCCGGTATATCTGGAG 59 20485668 20485742 ATCGATGACGCTTGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 klg FBgn0017590 FBtr0084337 1 1 1 83 3R 18784143 18784161 AGCTACAATCTGACCTGGA 59 18784208 18785280 CTCATTCATCTGCACTCGA 59 NA Drosophila melanogaster 50 CG17618 FBgn0040587 FBtr0113328 3 1 1 60 3R 18555467 18555542 TGATGCTTGTATCCTTGCT 58 18555564 18555584 GCAAAGCATACTGGATATACG 58 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG6439 FBgn0038922 FBtr0084190 3 1 1 157 3R 17843782 17843800 GACTTCGAGTGCTACTTCC 59 17843586 17843604 TTCATGTTAAGGGTCTGCA 58 NA DesignNoJunction Drosophila melanogaster 50 CstF-64 FBgn0027841 FBtr0083660 2 1 1 64 3R 14485510 14485528 CGAGGAGAAGCTAAAGGAG 59 14485555 14485637 CAAAGACCAGTTTCAGTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rec FBgn0003227 FBtr0083193 2 1 1 126 3R 11656166 11656184 TAAATCCGGTCCTAAACGA 57 11650575 11656076 ATTATCGCAAGAAGTTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 FK506-bp1 FBgn0013269 FBtr0083120 3 1 1 294 3R 11158533 11158735 GGTTTGAACATGAAGCCTG 59 11158190 11158208 CGATCGTCATTTGATCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Art6 FBgn0038189 FBtr0082878 3 1 1 107 3R 9771030 9771108 GGAAATGCTCTGTATATGGAG 57 9770943 9770961 TAACCAGAGGTTTCCAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Adgf-C FBgn0038173 FBtr0082821 3 1 1 184 3R 9534069 9534090 TCTTAAGGATATAGTCGAGGTG 58 9534287 9534360 CACCAAACCAATTGGTCTC 58 NA Drosophila melanogaster 50 CG17202 FBgn0038043 FBtr0082587 3 1 1 91 3R 8248583 8248663 GTCCTTTAAGCCCATTGAC 58 8248718 8248736 GTATGAAGAGCTTGGTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6723 FBgn0037895 FBtr0082405 1 1 1 99 3R 7243950 7243968 CTAAACATCACCTCCACGT 59 7243697 7243832 GATAGGCCACATTCATAATGG 58 NA Drosophila melanogaster 50 CG33783 FBgn0053783 FBtr0091784 2 1 1 136 3R 5892590 5892608 TACGTGCTATGAGAAGTCC 58 5892708 5892904 ATAGCGATAGAATGCACGT 58 NA Drosophila melanogaster 50 RpS29 FBgn0037752 FBtr0082137 2 1 2 150 3R 5604291 5604310 AGATTCTTTGATGGAACCGA 59 5604423 5604499 GCTTCTTGAAGCCAATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8379 FBgn0037638 FBtr0081922,FBtr0081921 2 2 2 102 3R 4651044 4651062 TATCCTGGTCAACTATCGC 58 4651128 4651370 TATCATTTGGCCATAGCCA 58 NA Drosophila melanogaster 50 CG9821 FBgn0037636 FBtr0081931,FBtr0081932 2 2 2 179 3R 4644394 4644413 CAACATCAGAATGACAACCG 59 4644234 4644252 ATACTGTTGGAATGTGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31259 FBgn0051259 FBtr0081871 3 1 1 293 3R 4351253 4351344 TTTCAAGTCGACTACCTGC 59 4351601 4351619 AGGAACTTGTAGTAGCTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG18747 FBgn0042104 FBtr0081778 2 1 1 108 3R 3609057 3609201 ACTTAAATTAGTCGCACTGG 57 3608496 3608517 CCACTTGGTTATAGAATATCCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG10029 FBgn0037498 FBtr0081591 2 1 1 60 3R 3142358 3142379 TGAGTATGATAACTATCGCAGG 59 3142215 3142338 CACAAGGAACCTACAATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dj FBgn0019828 FBtr0089741 3 1 2 99 3R 2885195 2885293 CTTGAGAACTTTAAGGAAGGG 58 2885354 2885372 CTTTCGTTGCATTGGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pif2 FBgn0046873 FBtr0081676 1 1 1 138 3R 2375283 2375301 CAAAGTGCAAGTGATCCAC 59 2375403 2375421 TATGATTGCCTTAGCTGGT 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Osi10 FBgn0037417 FBtr0078601 3 1 2 119 3R 2091004 2091024 GGCCAAGTAACAAACTATTGG 59 2091105 2092142 TCTCAGAGCCTAGACAGTC 59 NA Drosophila melanogaster 50 Rpn5 FBgn0028690 FBtr0078629 3 1 1 81 3R 1616690 1616709 CGAGATGTTCAAGGATAGCA 59 1616751 1616833 GCGAATGTTATGCTCTATCAG 58 NA Drosophila melanogaster 50 rev7 FBgn0037345 FBtr0078699 1 1 1 60 3R 1414895 1414916 AGTGTATCAGAAGGAGAATGAG 59 1414937 1414955 CCTCTGGGTTTCTAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34305 FBgn0085334 FBtr0112501 2 1 1 100 3R 68762 68844 CTTCATAATCCTGCTAGTCCT 58 68682 68700 GATCATCTTTGTAGCGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32454 FBgn0052454 FBtr0078529 1 1 1 60 3L 22723169 22723188 GGATGAAATTGATCTGCACC 59 22723208 22723229 CGCGTGCATATAAGAATTAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Exn FBgn0027593 FBtr0075271,FBtr0075273,FBtr0075272 1 3 3 80 3L 16984290 16984310 GATGATTACGACTCCTTTGAG 58 16984351 16984432 GTCATTGTAGTTTCTTTGCC 57 NA Drosophila melanogaster 50 Taf4 FBgn0010280 FBtr0075450,FBtr0075449,FBtr0075451,FBtr0075448,FBtr0114589 2 5 5 190 3L 16112320 16112340 TGAGGTATTTCTCAATCTCCC 58 16112492 16112567 GTGGATCCAACTTGATGAC 58 NA Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0112852,FBtr0112851,FBtr0075438,FBtr0075439 2 4 6 100 3L 16057085 16057333 GTCCCACTAATAATCAAGTTCC 58 16057394 16057412 ATCGTTCTCAAAGCTTTGC 59 NA Drosophila melanogaster 50 CG6084 FBgn0086254 FBtr0076139,FBtr0076138 3 2 2 93 3L 11614648 11614667 TACAATCACTGCCTACAGTC 59 11614514 11614592 TTCCTTGATCTTAGCCTCC 58 NA Drosophila melanogaster 50 CG6272 FBgn0036126 FBtr0076234 2 1 1 69 3L 11090964 11091109 AAACAATGAGGCTGTTCAG 58 11090913 11090931 GATGCGTTTCTTACGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6327 FBgn0036115 FBtr0076245,FBtr0076244,FBtr0076243,FBtr0076246 2 4 4 107 3L 11030799 11030817 GATTGCCCTCTACACTCTG 59 11030644 11030728 GATTGGGCCAACTTATCCT 59 NA Drosophila melanogaster 50 CG6640 FBgn0036068 FBtr0076312 1 1 2 229 3L 10091048 10091066 TTATCCACCACAAGGACAG 58 10090288 10090855 TAAAGATGAGACCAGCTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG6416 FBgn0035917 FBtr0089568,FBtr0089561,FBtr0089563 3 3 8 88 3L 8620819 8627689 ATTGTGAATCAGCCCTACC 59 8627741 8627759 CTCAAGTAGGACTCTGTCG 58 NA Drosophila melanogaster 50 CG6638 FBgn0035911 FBtr0076651 2 1 1 241 3L 8568815 8568890 ATAATTTCAAGGACATGCGC 59 8568491 8568509 CTTGGGAAGGTACTTCTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG33276 FBgn0053276 FBtr0114530 1 1 1 123 3L 7633288 7633370 TGGACTATTGCTAATCTGCT 58 7633124 7633145 CCCAGTCTGTATCATTTATGAG 58 NA DesignNoJunction Drosophila melanogaster 50 msl-3 FBgn0002775 FBtr0076926,FBtr0076927 2 2 2 87 3L 7117435 7117511 GTTATGTCCACTGTCTGCA 59 7117366 7117385 TATACAGCAAGTGGTCATCC 59 NA Drosophila melanogaster 50 Cpr65Az FBgn0035686 FBtr0076996 3 1 1 70 3L 6154287 6154364 CCGATGGTTCTTATATGTACGA 59 6154395 6154413 CTTCAAGTAGCCCATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Teh2 FBgn0035505 FBtr0073258 3 1 1 97 3L 4180800 4180818 TGCTCAGCTATTGGTACTG 59 4179578 4180740 CAGAAGTTTGTCTTCCTTGG 58 NA Drosophila melanogaster 50 CG13921 FBgn0035267 FBtr0072773,FBtr0072772 1 2 2 85 3L 1749644 1749725 AGTGGATAAGGAAGGAGTG 57 1749774 1749792 CTCTCAGGCAGGAATAGAG 58 NA Drosophila melanogaster 50 snoRNA:Psi18S-1389b FBgn0083045 FBtr0113526 1 1 1 60 2R 17221696 17221714 AATGAAGTGAGTGTTGCCA 59 17221737 17221756 CAACTATGTCTGAAAGCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pof FBgn0035047 FBtr0072327,FBtr0072328 3 2 2 159 2R 20558154 20558174 ATAACTGCTCAGATTCCAGTG 59 20558292 20558374 GTATCTTCTAAGCTGTTCTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34214 FBgn0085243 FBtr0112407 1 1 1 68 2R 20553345 20553422 ATAAATCCTCTGTACCCGC 58 20553295 20553313 TTGGATAATCGATCCGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 G-salpha60A FBgn0001123 FBtr0072144,FBtr0072143,FBtr0072142 2 3 3 81 2R 19833971 19833989 TGACGCAATAATGGAATCC 57 19834033 19834132 AGATATACGCAGAAACTCGT 58 NA Drosophila melanogaster 50 Tbp FBgn0003687 FBtr0071679 3 1 1 184 2R 17574323 17574341 ACAATCCTAAGCGATTTGC 58 17574093 17574175 AAAGTCGAGGAACTTTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9865 FBgn0034649 FBtr0071680,FBtr0071681 2 2 2 60 2R 17556362 17556381 TTTGCTACGGACAATTACAC 58 17556321 17556342 TTGTAGTCTATATCGGTGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Xbp1 FBgn0021872 FBtr0071571,FBtr0071572 2 2 2 79 2R 17031639 17031722 AAAGAAGCTAAAGAACCGTG 58 17031764 17031782 TCTCGTAGTCCATCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL54 FBgn0034579 FBtr0071533 1 1 1 60 2R 16948710 16948788 AAATCAAACCGGATTCGGA 59 16948811 16948830 ACTATGCCTTCCGTATTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3216 FBgn0034568 FBtr0071551,FBtr0071552 2 2 2 80 2R 16878261 16878281 CCTTGGATGAGATTAACAAGG 58 16878136 16878219 AACAGGATGGATAGCTTCC 58 NA Drosophila melanogaster 50 Ate1 FBgn0025720 FBtr0086319,FBtr0086318,FBtr0086317 1 3 3 82 2R 16142845 16142922 CTCACCGATGTTATTCGTG 58 16142781 16142799 TCATTCACATCCCTAGCTG 58 NA Drosophila melanogaster 50 CG12963 FBgn0034031 FBtr0087337 3 1 4 91 2R 11444239 11444257 AGTTGAAGATCGACGAGTG 59 11444310 11449330 TACATTACGATCTTCCATGGC 59 NA Drosophila melanogaster 50 CG8155 FBgn0034009 FBtr0087391 2 1 1 94 2R 11207995 11208072 AGGAATTCGTACCCATTACTG 59 11207921 11207939 CAGATAGGAAGGACTGGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG18324 FBgn0033905 FBtr0087523 1 1 2 80 2R 10057020 10057085 TCTACATGATAAAGGCCCA 57 10057129 10057147 TCATCGAAGTATGCTTGTG 57 NA Drosophila melanogaster 50 CG33752 FBgn0053752 FBtr0091753 2 1 1 83 2R 8433589 8433665 CCATGATATACTGGTAAAGGAC 57 8433708 8433727 CTAAACATGTAGTTTCCCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vis FBgn0033748 FBtr0087944,FBtr0087945 1 2 2 81 2R 8396265 8396284 CTCTGGTTCTAAGGCATCTG 59 8396137 8396222 CAACTGTTGATTCACGTCAC 59 NA Nonspecific Drosophila melanogaster 50 Cpr49Ag FBgn0033730 FBtr0087922 3 1 1 174 2R 8295376 8295394 AGTTAGTCTTCCTCGTCTG 58 8295532 8295631 TTCGATGTCTCATAGCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34228 FBgn0085257 FBtr0112421 3 1 1 108 2R 7539478 7539496 GTAACGCCGTTTACATCAC 59 7539567 7539654 TGTATGGATGGACTGTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr47Ee FBgn0033602 FBtr0088114 1 1 1 105 2R 7153179 7153197 TCTCCTACGGATACTCGTC 59 7153266 7153629 GATCCCTGAATCACCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8728 FBgn0033235 FBtr0088882 3 1 1 120 2R 3825359 3825378 GCAAAGATACTTTGTGGAGG 58 3825205 3825279 GCATTGTTCCTTTACTAATCCG 59 NA Drosophila melanogaster 50 Tsp42Ei FBgn0033130 FBtr0089028 3 1 1 114 2R 2923846 2923864 TCGTGAAGTATCTGGACGA 59 2923998 2924017 TTCTTTACGCTGCTGTAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7200 FBgn0032671 FBtr0081062 1 1 1 60 2L 18157849 18157921 CATGGACCTCCTATCATGC 59 18157807 18157825 CCCACTATATTGGTGGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31775 FBgn0028537 FBtr0080691 1 1 1 112 2L 14737636 14737721 TTGATCCTCTTCATTGCCC 59 14737542 14737560 AATCCACCTCCAAATCCTC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 loqs FBgn0032515 FBtr0080498,FBtr0100220 3 2 3 104 2L 13384782 13384992 GCTTAAGTTACAGAAGACTTGC 59 13385057 13385075 ATGTCCACATAGGTCACCT 59 NA Drosophila melanogaster 50 CG17217 FBgn0032419 FBtr0080341 1 1 1 62 2L 12170846 12170864 AAAGTTCTGAGATGGTCGT 58 12170890 12170965 TTGTCCATACCATTTGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RfC38 FBgn0028700 FBtr0080225 1 1 1 60 2L 11130146 11130165 CTTTGGGTGGATAAATACCG 58 11129995 11130123 CTTGATCCTTGTGGAAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4995 FBgn0032219 FBtr0079989,FBtr0079991,FBtr0079990 1 3 3 60 2L 10324293 10324380 TCTAAGGGATATTCCAGGC 57 10324404 10324422 TTGACGCATAAGGTACTCG 59 NA DesignNoJunction Drosophila melanogaster 50 sop FBgn0004867 FBtr0079905 3 1 1 60 2L 9896944 9896963 CAAGATCAAGTCTTTGGAGG 58 9896903 9896922 GATCTCGAACTCTTTGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13384 FBgn0032036 FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079658 1 4 6 230 2L 8385088 8386225 TACAGTCAGTATTCCCGAG 57 8386516 8386535 TTATAGGACTTATCCGTCGA 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Pvr FBgn0032006 FBtr0079629,FBtr0079628,FBtr0079625,FBtr0079627,FBtr0079630,FBtr0079626 3 6 6 83 2L 8224649 8224667 ATGAAGGCGTCTACAAGTG 59 8224523 8224602 CGGGCAGATCTGATATCAC 59 NA Drosophila melanogaster 50 CG31630 FBgn0051630 FBtr0079400 3 1 1 63 2L 7046480 7046498 TCAAGAAGCTAGACTCCCT 59 7046525 7046543 AAGGTTTGCCCATAATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11015 FBgn0031830 FBtr0079288 1 1 1 199 2L 6558587 6558952 CATCTGCGAAGAGGATCAG 59 6559115 6559133 ATTTGGACAGCTAAGTGGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG3225 FBgn0031631 FBtr0077416 1 1 1 127 2L 4815850 4815929 CCTTAATGATAGGTGTGAAACG 59 4815744 4815762 ATGATGTTTCAGGGACGAG 59 NA InUTR Drosophila melanogaster 50 morgue FBgn0027609 FBtr0077457 3 1 1 118 2L 4444547 4444565 CAGTTGCTAAAGGAACTGG 58 4444385 4444466 CAGCAGGTGTTACTATTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 syt FBgn0004242 FBtr0077727,FBtr0077726,FBtr0077728 1 3 4 80 2L 2792532 2792550 AAGAAGTTCGAGACCAAGG 59 2792360 2792490 GTAGGGCAAACTCTTAAAGGT 59 NA Drosophila melanogaster 50 Gr22a FBgn0045501 FBtr0077897 2 1 1 97 2L 1793970 1793988 TTTAGCTGAGAGTACTGGC 58 1793826 1793909 ATTCTGTTACTCTGCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14339 FBgn0031301 FBtr0077954 3 1 1 93 2L 1110412 1110487 GTAGACTTTGCGAATCTCTG 58 1110543 1110561 TATCGAAACCCTCGTTCTC 58 NA Drosophila melanogaster 50 tRNA:Y1:85Aa FBgn0012024 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:I:49Fb FBgn0011882 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG14408 FBgn0030581 FBtr0073991,FBtr0073990 1 2 4 107 X 14722054 14723176 TTCAGCAGATCTTCAGAGC 59 14721965 14721985 GAGTTCCTCCACTATAATGGC 59 NA Drosophila melanogaster 50 hop FBgn0004864 FBtr0073457 3 1 1 197 X 11258687 11258705 TCATTCAAGCGGATAGTCC 59 11258448 11258529 ATATCGAATCTGGATACCACTG 59 NA Drosophila melanogaster 50 CG32686 FBgn0052686 FBtr0071468,FBtr0071467,FBtr0113446 2 3 3 60 X 10267352 10267370 GAATCAAAGAGCCCATCTG 58 10267310 10267328 TAACTCCAGTTGAGTCCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475 2 6 7 169 X 10173217 10217610 AAGGTCAAAGAGATGATGGA 58 10173067 10173085 AGTCCCATAATGTACAGGG 58 NA Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297 1 4 6 117 X 9005031 9005126 GAGCATGGATTTAATCCAGC 59 9005449 9005467 GAATCTGTCGGATGAGGTC 59 NA Drosophila melanogaster 50 CG32727 FBgn0052727 FBtr0071056 1 1 1 60 X 7301630 7301649 AGTATTAGTCCTAACGCTCC 58 7301672 7301690 TTCGATCCGGATGTTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0045 FBgn0026702 FBtr0070782 2 1 1 60 X 5518675 5518694 GGATCATCGTTCTATGTGCT 59 5518714 5518735 GAATACTCTCGACAATCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yin FBgn0015565 FBtr0070632,FBtr0070633,FBtr0070631 2 3 3 173 X 3759040 3759114 GATGCCAACTAAAGCTGTG 59 3758885 3758903 AAAGATCCTGCGTTAATGG 57 NA DesignRelaxed Drosophila melanogaster 50 trol FBgn0001402 FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964 1 4 7 80 X 2386428 2386446 TAGTAATGATCGCAGACCG 58 2384863 2386384 CCAACGTCGTTATTCTCCT 59 NA Drosophila melanogaster 50 CG41529 FBgn0085671 FBtr0114118,FBtr0114119 3 2 2 66 U 3832285 3832303 CAATTGGTTTGACCTGCTC 59 3832331 3832351 TAGCTTCTGGTTGAGATTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cals FBgn0039928 FBtr0089208,FBtr0089207 1 2 2 83 4 1140617 1140635 TCGCCTAGACTTATGTGAC 58 1139633 1140570 ATGTGCTTTGTCTTAAGGG 57 NA Drosophila melanogaster 50 CG15817 FBgn0028476 FBtr0085395,FBtr0085396 2 2 2 81 3R 25057749 25057767 TAATTGCATCAGGGAAACG 58 25057812 25057896 GGCTATGTATCCATTTGCG 58 NA Drosophila melanogaster 50 Lnk FBgn0028717 FBtr0084937,FBtr0084935,FBtr0084936 1 3 3 108 3R 21717660 21717678 TGGCTACGATAATGGTCAG 58 21717750 21718182 CACTTCGTTGCAATGTCTC 59 NA Drosophila melanogaster 50 Caki FBgn0013759 FBtr0112872,FBtr0112873,FBtr0084162 3 3 5 83 3R 17617276 17617297 TTCAAGATAGTTCCTTCGTACC 59 17615474 17616440 CACGAATATAAGCACCGGA 59 NA Drosophila melanogaster 50 PP2AB FBgn0042693 FBtr0083553,FBtr0083552 2 2 5 81 3R 13995748 13995766 TGTAGAAGGAGTAGCTCCA 58 13995811 13997259 TTTGTTAGCCAAACTGCTC 58 NA Drosophila melanogaster 50 Hsc70-4 FBgn0001219 FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056 2 6 6 71 3R 11071531 11071549 GGTATCCTCAACGTGACTG 59 11071584 11071602 CTTGTCGTTGGTAATGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CheA87a FBgn0038142 FBtr0082749 2 1 1 60 3R 9195749 9195769 GCTTTGCGACTTTATGAAGAG 59 9195790 9195809 GTATTCCTTGATCCGTTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34108 FBgn0083944 FBtr0110788 1 1 1 60 3R 6051651 6051669 AGAAGAAAGGACAACTGGC 59 6051693 6051711 TCTAGGGAGGATCGATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trl FBgn0013263 FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704 3 8 9 237 3L 14747639 14750011 TGCTAAAGAATACACCATGC 58 14747421 14747439 TGTTGTGGAATCATGTGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG5288 FBgn0035950 FBtr0076553,FBtr0076555,FBtr0076554 3 3 3 81 3L 8977960 8977980 CAGCTTCAACTCAGAAATCTC 58 8977754 8977917 TTGGAAGCTCGATTCTGAG 59 NA Drosophila melanogaster 50 Lcp65Ac FBgn0020642 FBtr0076991 3 1 1 120 3L 6138330 6138348 TACACGGTCAACTACATCG 59 6138430 6138450 TATACATAGAACAGCTCTCGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Srp54k FBgn0010747 FBtr0077169 2 1 1 60 3L 5147367 5147385 TGACCAAGAATGTGAATCC 57 5147409 5147427 ATCATCTTCGCTATCTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr64d FBgn0035486 FBtr0073197,FBtr0073198 3 2 2 120 3L 4033402 4033470 CTCATCTTTGCAATGGCTG 59 4033554 4033572 AAATGCTCATGGAGGAACC 59 NA Nonspecific Drosophila melanogaster 50 Awh FBgn0013751 FBtr0073156 1 1 2 81 3L 3860693 3860712 CATTTCAGAATAACGCACAG 57 3860754 3860903 TCCATAGAGGATTCATGAGTC 58 NA Drosophila melanogaster 50 CG12020 FBgn0035273 FBtr0072778 3 1 1 61 3L 1798156 1798175 CTTCACGTTCTTCATTTGCA 59 1798199 1798217 CTACGTCCGTAATGACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3511 FBgn0035027 FBtr0072309 3 1 1 97 2R 20460294 20460312 TGGCATTCTCGAATACTGG 59 20460373 20460449 ACTCAAAGAGGCTTGTGTC 59 NA Drosophila melanogaster 50 CG15873 FBgn0035003 FBtr0072357 2 1 1 77 2R 20317560 20317580 CTATGGCGATACATGTATCAC 58 20317450 20317468 AGGTAGACCAGTTCATTCG 58 NA DesignNoJunction Drosophila melanogaster 50 LBR FBgn0034657 FBtr0071713,FBtr0071711,FBtr0071712 3 3 3 60 2R 17610551 17610571 GTAAATTATGATCCTGCCACC 58 17610593 17610611 CGTCCAATACGTAGAACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11200 FBgn0034500 FBtr0086300,FBtr0086299 2 2 2 71 2R 16193964 16193982 ATCAGTACCTGGGAATCGT 59 16193848 16193930 TATAAAGTGCCACTCGATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG33454 FBgn0053454 FBtr0086565 3 1 1 98 2R 15138745 15138763 AACATCAACCATTCTTGCC 58 15138604 15138625 GCGTGATAAATAATCTCCAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 RhoGAP54D FBgn0034249 FBtr0086900 2 1 2 128 2R 13475138 13475156 TACAGAGCAGCGTATATCG 58 13474895 13475046 TGATAGATTCCTGCATCGC 59 NA Drosophila melanogaster 50 SRPK FBgn0026370 FBtr0087385,FBtr0087384,FBtr0087383 1 3 3 256 2R 11271644 11271662 CTCTGTGGAGGATAACGTG 59 11272078 11272096 TAGCCTGTTGACTCTTGAG 58 NA DesignNoJunction Drosophila melanogaster 50 kn FBgn0001319 FBtr0112809,FBtr0087465,FBtr0112810 2 3 3 119 2R 10662970 10663056 TTCGTCTATGTCTCAGCTC 58 10662869 10662890 CTTGAGGATTATCTCTTTCTGG 57 NA Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930 2 5 6 106 2R 8335509 8335527 ATCATAACCTCAACAAGCG 57 8335596 8335677 CGAGTTATCACTTGTGTACG 58 NA Drosophila melanogaster 50 CG8831 FBgn0033737 FBtr0087952 3 1 1 60 2R 8317040 8317058 TTCTGCAGAGAACTCTCAG 58 8316942 8316960 TGTGAAGCGTTTGAATCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9027 FBgn0033631 FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897 2 4 4 189 2R 7269618 7269637 GGATAATACCCAGGTCAAGG 59 7269385 7269466 ACCGTGATCAACCTTATCG 59 NA Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 2 12 12 89 2R 6499951 6500254 GGCATATGGACATGTATAACTC 58 6500304 6500322 TATAGTGCGGTTCCTTCTG 58 NA Drosophila melanogaster 50 CG12159 FBgn0033232 FBtr0088889 2 1 2 166 2R 3803412 3803430 TGCTGCTTATTATGAGGGT 58 3802673 3802903 TTAAACCTGAACCAACTCG 57 NA Drosophila melanogaster 50 CR31808 FBgn0062978 FBtr0080943 2 1 1 60 2L 16705548 16705566 ATGCGTCTATTCCGATTCG 59 16705506 16705527 TTATGGACTAACTCCGTTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9253 FBgn0032919 FBtr0081468 1 1 1 286 2L 21143661 21143679 AGGATGTAATTGGCCTAGC 59 21144118 21144136 TAGATGATCAACCAAGCGA 58 NA DesignNoJunction Drosophila melanogaster 50 fbp FBgn0032820 FBtr0081321,FBtr0081322 3 2 2 138 2L 19762596 19762614 GGAGGTCAAGAAACTGGAC 59 19762294 19762496 GATGTATTTGCCCTGTTTCTC 59 NA Drosophila melanogaster 50 Ddc FBgn0000422 FBtr0081168,FBtr0081167,FBtr0081166 3 3 3 69 2L 19117496 19117514 GTTTGATTCCCTTCTACGC 58 19117445 19117463 TCATCCAAGTAGTCGAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Socs36E FBgn0041184 FBtr0081041,FBtr0081040 2 2 2 281 2L 18141991 18142010 TAAGTACGTTACAACTGCAC 57 18141236 18141747 TATTGCTTCTGGAAACTGG 57 NA DesignRelaxed Drosophila melanogaster 50 CG12455 FBgn0028859 FBtr0080823 1 1 2 80 2L 16239067 16239089 GGAAGTATTTAGTAGGTCGACTC 59 16239128 16239213 TGTATTCCATAAATGGCGCT 59 NA Drosophila melanogaster 50 abo FBgn0000018 FBtr0080168 2 1 1 60 2L 10974629 10974648 TCGTATGTGTTCTTTCTGGT 58 10974588 10974607 GCAGGATAAGTCTATCTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9520 FBgn0032078 FBtr0079790,FBtr0079788,FBtr0079789 1 3 3 128 2L 8945116 8945369 TACTCAATGAAGGTCGCTC 59 8945006 8945026 CATCGTATGGCATGAATTCAC 59 NA Drosophila melanogaster 50 CG12560 FBgn0031974 FBtr0079548 2 1 1 96 2L 8008748 8008766 ATTTGGGTGCTTATGACGA 59 8008605 8008623 TTATGTGACTCCAGAACCT 57 NA DesignNoJunction Drosophila melanogaster 50 Rapgap1 FBgn0085403 FBtr0112605,FBtr0112603 1 2 4 149 2L 7501515 7536282 TTTCTCAGAACCACCATCG 59 7501384 7501402 TCGAGTGATTCATCGAGTG 59 NA Drosophila melanogaster 50 CG2950 FBgn0031637 FBtr0077411,FBtr0077409,FBtr0077410 1 3 3 86 2L 4845308 4845326 AAACCGACCAAGATTCCTG 59 4845145 4845259 CTTGATGCCCATTACTTTGC 59 NA Drosophila melanogaster 50 BG642163 FBgn0083938 FBtr0110769 1 1 1 60 2L 4642388 4642409 GAATCTTCAAATCCTCTTGTCC 59 4642430 4642448 ATGGACTCAAACTTGGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Thor FBgn0022073 FBtr0077524 2 1 1 158 2L 3479212 3479230 TCATGAAGAATCTCCGTGG 59 3479352 3479370 CCTGGTCCTCAATCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7280 FBgn0030966 FBtr0074655 1 1 1 76 X 18741340 18741421 GTAAAGGGTCTTTCATGGG 57 18741282 18741300 CTTAGAATGTCGCACAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1468 FBgn0030157 FBtr0071388 1 1 1 72 X 9772671 9772692 CGATGATGACGAATTAAACTGG 59 9772725 9772866 CACTACATCTCCACACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sep2 FBgn0014029 FBtr0083945 2 1 1 61 3R 16413884 16413902 ACCAACTGGTCAACAAGAG 59 16413175 16413859 TTCGCCTATACACATGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6218 FBgn0038321 FBtr0083119 3 1 1 118 3R 11165164 11165182 CCTTATTTCAGGAACCGGA 58 11164872 11165082 GATACGAGATGTACCAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 Rrp6 FBgn0038269 FBtr0113235 1 1 1 256 3R 10711465 10711557 CAAAGGGTTCAAGAATGCA 58 10711115 10711133 GATTAGTCGTAATGCGCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG32055 FBgn0052055 FBtr0076304 3 1 1 63 3L 10212577 10212651 ACTTTCAATGGTGTCACCT 59 10212532 10212550 CAATTGCTGTGAAGATGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33523 FBgn0053523 FBtr0091478,FBtr0091477,FBtr0091475 2 3 4 94 3L 5921732 5921813 ACGTACAAGATCCAAACCA 58 5921871 5921889 CATATGTTGATGGTGGCCT 59 NA Drosophila melanogaster 50 CG10853 FBgn0035478 FBtr0073164 3 1 1 60 3L 3947945 3947964 AGTTATATCCCTAGCTGTGC 58 3947987 3948062 CCAGGGATTATTGTGACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3825 FBgn0034948 FBtr0072204 2 1 1 161 2R 19863606 19863684 CTCCTGTCAAGAAGGTTCG 59 19863463 19863483 CATTGAGAATGGGTGAAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PIP5K59B FBgn0034789 FBtr0071901,FBtr0110862,FBtr0071900 3 3 3 102 2R 18763722 18763742 TCTATATTCTACCTGACGACC 57 18763803 18763886 GATTCATATAGTAACCAGGCAG 58 NA Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494 2 7 7 152 2R 15418202 15419689 CTATTGAGGGTAAAGGCAC 57 15418068 15418087 CTCAATTGTAGATGTCCACC 57 NA Drosophila melanogaster 50 CG6280 FBgn0033866 FBtr0087628 1 1 1 233 2R 9643071 9643144 GAGCTTAATAAGCAGCCAG 58 9643461 9643480 GAACTGGATGTAACCATGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Cpr49Ah FBgn0033731 FBtr0087924 1 1 1 163 2R 8301578 8301816 CATACTTCTTGTGCTGTTGG 59 8301939 8301960 CCTTGTTGTACTTGATTATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33558 FBgn0053558 FBtr0086193,FBtr0113470 2 2 2 94 2R 2821425 2821581 TATCACGAAAGAGCTGTCC 59 2821349 2821367 ACATGTTCACATAGGTGGG 59 NA Drosophila melanogaster 50 Pi3K21B FBgn0020622 FBtr0078132 3 1 1 154 2L 299901 302027 CAAGGACAAGTACATTGAGC 58 302144 302162 CATCCTTTAGCAACCAGAG 57 NA DesignNoJunction Drosophila melanogaster 50 tRNA:CR32363 FBgn0052363 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG15126 FBgn0040729 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG17159 FBgn0039945 FBtr0113720,FBtr0113717,FBtr0113718,FBtr0113721,FBtr0113719 1 5 5 60 XHet 67548 67566 TACTCACTTAAATCGCCCA 58 66298 66316 TTATAGACGTTTGATGCGG 57 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 swaPsi FBgn0016974 FBtr0070923 2 1 1 120 X 6256152 6256170 TCCTTAGACTTAAGCAGCG 59 6255997 6256015 CTGGAGGAGATTGAATGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG41107 FBgn0069937 FBtr0111238 1 1 1 89 X 22274923 22274941 ATCTTTCTTGTGCGAATGC 59 22274852 22274870 ATGACCAAGGTATCAGGGA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 DIP1 FBgn0024807 FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370 2 4 4 170 X 21497272 21497350 TTCTTTGCATTATGCGTCC 58 21497120 21497138 GAGAGTTGCACACTTTCAC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG33713 FBgn0064116 FBtr0077227,FBtr0091702 1 2 2 60 X 21189427 21189446 AGGAGAACAATCTAGACAGG 58 21189386 21189404 TCCAGCTTAACCAAGTCAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1812 FBgn0031119 FBtr0077313,FBtr0077312 2 2 2 183 X 20385202 20385384 AAGCTTTACATCTCTGGTGG 59 20385530 20385548 ATTCCGTCAAACTCTCGTG 59 NA Drosophila melanogaster 50 RhoGAP19D FBgn0031118 FBtr0077320 2 1 1 102 X 20346681 20346701 CACGGAGATCCTATTCAAGAC 59 20346537 20346618 CTGGTGCTCATTATCATCGT 59 NA Drosophila melanogaster 50 Sdic2 FBgn0053497 FBtr0089610 2 1 1 67 X 20080202 20080220 TGGTCTACACAAAGCAGAC 59 20078245 20080171 ATCAAATGCAAGCACATCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Tyler FBgn0031038 FBtr0074735,FBtr0074736 3 2 2 84 X 19506171 19506189 ATATCTGTGTCCCGAAACC 59 19506325 19506343 CACACGATCTTGACAAAGG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Pfrx FBgn0027621 FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720 2 8 8 60 X 19402025 19402043 CGTTAAACGAGATCGATGC 59 19402067 19402085 TTCTCCTTGATTTGCTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7349 FBgn0030975 FBtr0074648 2 1 1 116 X 18789854 18789872 ATCATACTGGTGGAACAGC 59 18790008 18790026 TCCTTGAGAAAGTCCAGTC 58 NA DesignNoJunction Drosophila melanogaster 50 GalNAc-T2 FBgn0030930 FBtr0074624,FBtr0074625 1 2 2 173 X 18392114 18392132 GATCATCCTGGTGGATGAC 59 18391517 18391535 AAGAAGACGATCACCTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7536 FBgn0030890 FBtr0074530,FBtr0074531 2 2 2 103 X 17974381 17974457 TTCACAGTCCGAACTATGC 59 17974296 17974315 TTTGATATCCCACGTGTAGG 59 NA Drosophila melanogaster 50 CG5703 FBgn0030853 FBtr0074452 3 1 1 92 X 17527063 17527081 GAAGTTCACCATCTCGGAG 59 17527133 17527309 GATGTCAGATCCTCATAGTAGTC 59 NA Drosophila melanogaster 50 CG12998 FBgn0030829 FBtr0074394 3 1 1 191 X 17113161 17113180 GTCATAAAGATCGGAGGAGG 59 17113334 17113352 CCACCATCCACTATTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 xmas-1 FBgn0016080 FBtr0074405 1 1 1 256 X 17047319 17047337 TCACAGAAGATATCGCAGC 59 17046902 17046920 TATTGCTGTTGGTCACCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34015 FBgn0054015 FBtr0100070 3 1 1 62 X 16341818 16341836 TGATCTTTAGACCCTCCGT 59 16341701 16341720 TTTGGGAAAGGTAAATACGC 58 NA DesignNoJunction Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 3 7 7 85 X 16270054 16270134 GAGAACGAGGTGAAATGGA 59 16270183 16270201 CTGTAGGTGGGTAAGTCCT 59 NA Drosophila melanogaster 50 CG9911 FBgn0030734 FBtr0074243,FBtr0074241,FBtr0074242,FBtr0074244 3 4 4 81 X 16188807 16188825 AAATCTGAAGGAAGACTGC 57 16188674 16188763 TATGATAGGTGTACCTGGTG 57 NA Drosophila melanogaster 50 eas FBgn0000536 FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211 2 5 5 112 X 16178691 16178711 CTCTATGTCCAGGTCAATCAG 59 16178784 16179063 AATGCATAGCCTACGTAGTC 59 NA Drosophila melanogaster 50 mmd FBgn0041109 FBtr0074156,FBtr0074155 3 2 2 95 X 15856479 15856581 AATTTGAATGCAAGGCGAC 59 15856402 15856420 TTAGATTATCACCGCACGG 59 NA Drosophila melanogaster 50 CG8924 FBgn0030710 FBtr0074131,FBtr0074130 3 2 2 68 X 15837294 15837312 GAATGTCCACCTATCCCTG 59 15837402 15837421 GAATCCAAGTATTGCTGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Myb FBgn0002914 FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169 1 4 5 82 X 15749875 15749893 GGTCTATAATCGCGTTGGA 59 15749747 15749829 GTCCAAGTTGACTCTTGTG 58 NA Drosophila melanogaster 50 CG8105 FBgn0030661 FBtr0074048 1 1 1 60 X 15482555 15482573 GATCCCTGAAAGAGCTGAG 59 15482597 15482615 CTGAAGATACCCAGCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14408 FBgn0030581 FBtr0100150,FBtr0073990 2 2 4 239 X 14725646 14725664 CATCAACCGATACGAAGTG 58 14725332 14725350 AGGTAGACCATCTCCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 na FBgn0002917 FBtr0112815 1 1 1 80 X 14168770 14168789 AGCCTGATATACTTCTGCAC 59 14168830 14169182 GTTCTCCATGATAATAGCCAC 58 NA Drosophila melanogaster 50 l(1)dd4 FBgn0001612 FBtr0073841 2 1 1 110 X 13636000 13636089 AACATGAAGAACGAACTGG 57 13635908 13635926 ATCAGGATCATCGTACTGG 58 NA Drosophila melanogaster 50 CG15754 FBgn0030492 FBtr0073782 1 1 1 111 X 13422922 13422940 GTTGAGGGCTTCTATGTCC 59 13423015 13423103 TCAGAAACTCAACTGGACG 59 NA Drosophila melanogaster 50 Smr FBgn0024308 FBtr0073707,FBtr0073706,FBtr0073708 1 3 3 84 X 12604887 12604906 ATTATCTTGGACAGAAGCTG 57 12604744 12604840 TTGGATTCACTAACATCCG 57 NA Drosophila melanogaster 50 tomosyn FBgn0030412 FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678 1 4 4 80 X 12546142 12546277 ACTATCACGATGAAAGATGG 57 12546317 12546338 TAGACTAGGAAGACTATGTACC 57 NA Drosophila melanogaster 50 CG15728 FBgn0030409 FBtr0073674 1 1 1 124 X 12521534 12521555 CGGTTTGATGGTTTATCTACTC 58 12521640 12521722 ATACCTGGTGGATATGGCT 59 NA Drosophila melanogaster 50 LIMK1 FBgn0041203 FBtr0073661,FBtr0073659,FBtr0073660 1 3 3 129 X 12482054 12482073 CCGAGATGATGAAAGGTCTC 59 12481875 12481893 AGACTGAAGTCCGAATTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Cyp311a1 FBgn0030367 FBtr0073640 2 1 2 152 X 11924996 11925014 CTTTCAGCCTCAATTGCTG 59 11924785 11924880 ATTGAGGTGTCCACAATCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 RpII215 FBgn0003277 FBtr0073542 1 1 1 80 X 11461122 11461143 CTGAGTACAACAATCTAAAGGC 59 11460999 11461081 CACAAGCAATAACCTGGGA 59 NA Drosophila melanogaster 50 Spase25 FBgn0030306 FBtr0073506 2 1 1 105 X 11380044 11380062 ATCGATCAGAATGGCATCG 59 11380131 11380149 TAGAAGAAAGGCTGCTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1986 FBgn0030162 FBtr0071395 3 1 1 138 X 9804619 9804637 TTTCAATCTGCAGCTTGGA 59 9804441 9804518 GAATAGGGTCCAAGTTAGCA 59 NA Drosophila melanogaster 50 Ser7 FBgn0019929 FBtr0071387 2 1 1 76 X 9759604 9759622 CAAACAACAGTGCTTCTCC 59 9760024 9760044 CCAATGGCGGTATAATATTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Aats-lys FBgn0027084 FBtr0071367,FBtr0071366 3 2 2 73 X 9501701 9501721 CGCTATCTTGATCTCATTCTC 58 9501587 9501666 ACGTACGAGATGATCTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG33224 FBgn0053224 FBtr0089844 1 1 1 60 X 8943674 8943692 CGAGACTCAAACAGATTGG 58 8943713 8943734 GTCAGGGTTCTTACTATACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11265 FBgn0030049 FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964 3 4 4 142 X 8459066 8459084 ATGATATCGGTCGAAGCAG 59 8459189 8459420 AATGATTCGACCCAGTATCG 59 NA Drosophila melanogaster 50 Cp7Fa FBgn0014464 FBtr0100003,FBtr0114578 3 2 2 133 X 8366869 8366887 CTACAAGGATTCCAGCGAG 59 8366984 8367002 TTCAGTAGTAACCGTCGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2260 FBgn0030000 FBtr0071194 1 1 1 60 X 8013694 8013712 CTTCCAATCGCTATTGGTG 58 8013652 8013670 ATTGTCTTCCATAGCATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CHES-1-like FBgn0029504 FBtr0071079,FBtr0112946 1 2 2 80 X 7581776 7581865 CGCCATATAGCTTTAGTTCCT 59 7581716 7581736 CATAGATCTCTTTAACGGGCA 59 NA Drosophila melanogaster 50 CG3168 FBgn0029896 FBtr0070986,FBtr0070985,FBtr0070984 2 3 3 90 X 6617449 6617467 CCTTCTCGCAGACATACTC 59 6616690 6616708 AAGTACGACCAGATCACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4165 FBgn0029763 FBtr0070774,FBtr0070772,FBtr0070773,FBtr0070775 2 4 4 80 X 5317037 5317157 TAGAACACTACCAGACACCT 59 5317200 5317218 ACTCATAGCACCAGATGTC 58 NA Drosophila melanogaster 50 XRCC1 FBgn0026751 FBtr0070763 2 1 1 121 X 5225638 5225719 ATGTACCCATCTGATATGCG 59 5225803 5225821 ATGGCAGGTACTTCTTCAG 58 NA Drosophila melanogaster 50 SIP3 FBgn0061196 FBtr0070727 3 1 1 60 X 4854117 4854135 GAGCTAACCGAGCTAACTG 59 4854075 4854094 TTGGATTATTGCTCCTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6986 FBgn0029723 FBtr0100551,FBtr0100552,FBtr0070714,FBtr0070713 3 4 4 92 X 4619144 4619162 TCCAGCACTATGACTATCC 57 4619218 4620277 AGATGTAACCGAAACTGTC 57 NA Drosophila melanogaster 50 Mnt FBgn0023215 FBtr0070579,FBtr0070578 2 2 3 81 X 3593450 3593470 CTAAAGCAACTGAGCTTAAGG 58 3593513 3593728 CCAGACAAACTGCTTTGTC 59 NA Drosophila melanogaster 50 dwg FBgn0000520 FBtr0070487 3 1 1 135 X 2622874 2622893 TCAGATGATTGTGATACCCG 59 2623053 2623071 CAGGAAGTCCTCATCTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 mit(1)15 FBgn0004643 FBtr0100272,FBtr0070441 3 2 2 61 X 2499493 2499511 CCTAGGGCAGTTTGTAGAG 59 2499536 2499554 GAACTCGACGATACATCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14052 FBgn0029606 FBtr0070394 1 1 1 60 X 2118416 2118434 GAAGAAGGTGATCCACGAG 59 2118458 2118476 AATGTGTTCCTTGGTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 arm FBgn0000117 FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988 1 4 5 92 X 1787500 1787518 AGAAGAAGCATATGAGGGC 59 1786143 1787447 GTATCATATCCTTGCTGATGGA 59 NA Drosophila melanogaster 50 CG14770 FBgn0029573 FBtr0070213 1 1 1 61 X 1263399 1263655 AAGTTGGCTATTACCTGCC 59 1263680 1263698 TAGTCGTGGATCTTCAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DAAM FBgn0025641 FBtr0070241,FBtr0070240,FBtr0070239 3 3 3 82 X 1187405 1187424 TTCTCATGCTCGGTATACAG 58 1187282 1187360 AAAGAAGTCCAAATGCCTG 58 NA Drosophila melanogaster 50 CG11380 FBgn0040359 FBtr0070201 2 1 1 131 X 1088507 1088525 ATTAAGGAGCTGGACAAGC 59 1088620 1088706 GTAGCCGTATCCCAAATCC 59 NA Drosophila melanogaster 50 CG3777 FBgn0024989 FBtr0070066,FBtr0070068,FBtr0070067 1 3 3 98 X 241723 242116 CAAACAAGACTGGTAGAAATCG 59 242175 242193 CTACTGATGTGGCATCTGG 59 NA Drosophila melanogaster 50 CR42195 FBgn0085828 FBtr0114286 3 1 1 145 U 4085953 4085971 GAATATTCTGTGCATGGGA 57 4085826 4085844 TTAGTCTTAAGACGGTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40189 FBgn0058189 FBtr0113823 1 1 1 120 U 40283 40301 ACAAAGGAAGGTTGATCGA 58 40993 41728 ATGATATCTTTCGAGTGCGA 58 NA Drosophila melanogaster 50 RfaBp FBgn0016724 FBtr0089188 2 1 1 165 4 1093857 1093875 AATCTCGTCAAGTTACGGA 58 1094004 1094079 TTAAATAGGGTGCGTATGC 57 NA Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 2 8 8 80 4 671647 672939 ACAGCACAGATTGATGGTC 59 671585 671604 GTTCAAATACGGGTGAAAGC 59 NA Drosophila melanogaster 50 Pur-alpha FBgn0022361 FBtr0089994,FBtr0089996 2 2 4 146 4 585280 586045 TGATGGAGGGTTTAAAGGA 57 586240 586258 ATAGTTATCGAAGTCCGGA 57 NA Drosophila melanogaster 50 CG32850 FBgn0052850 FBtr0089123 2 1 1 89 4 337128 340085 TGTATCATCAGGGAGAGCA 59 340135 340156 GTTGACGATTGTTAGAAGATGG 59 NA Drosophila melanogaster 50 mod FBgn0002780 FBtr0085874 2 1 1 82 3R 27880066 27880150 GAACTTGACTTCAGATGCT 57 27880195 27880214 CCAACATTATGATGCTTTCG 57 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 3 14 14 110 3R 27690344 27690864 TAAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 CstF-50 FBgn0039867 FBtr0085866,FBtr0085865 3 2 2 62 3R 27561809 27561827 CTTGCGTGAAATATTCGCC 59 27561765 27561784 TGATGTCACCATCATAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ctr1C FBgn0062411 FBtr0085750,FBtr0085749 1 2 2 60 3R 26789596 26789616 GGAAGGGATCAGTATAATCGG 59 26789556 26789576 GCTGGTTGTAATTGTAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31013 FBgn0051013 FBtr0085671 3 1 1 87 3R 26470934 26471014 CAGTACAATGACAGCATGAG 58 26470866 26470885 ATTGAATAGCATCCGATGGT 59 NA Drosophila melanogaster 50 tmod FBgn0082582 FBtr0085658,FBtr0113483,FBtr0085660 1 3 7 81 3R 26359219 26397538 AGATCACTGAGACTTCTGC 58 26397583 26397601 TACTCACTCAGATCCTTGC 58 NA Drosophila melanogaster 50 spn-A FBgn0003479 FBtr0085589,FBtr0085590 3 2 2 63 3R 25880957 25880975 CTTTGAGTCCAGATACGCT 59 25880912 25880931 ATAATCGGATCTGTAGAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7903 FBgn0039730 FBtr0085608 2 1 1 211 3R 25820053 25820072 AATAGTGACTTTCAGGGAGG 58 25819802 25819880 GGATTTCCTCCATTAGTCCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG7816 FBgn0039714 FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921 3 6 6 81 3R 25690544 25690624 GGGCGATAATCAAGATCCT 58 25690481 25690500 GATCGTGAAGATCAGTATGC 58 NA Drosophila melanogaster 50 CG11881 FBgn0039638 FBtr0085414 3 1 1 118 3R 24954760 24954778 TTAATCTTAGCACCTCGCC 59 24954594 24954681 CAGTGAGTCATTGATTGTTCTG 59 NA Drosophila melanogaster 50 Dhc98D FBgn0013813 FBtr0085291 3 1 1 81 3R 24321143 24321164 GGATCTGGTCATAAACATACAC 58 24321206 24321293 GTACTTTCGGAATTGCGAC 59 NA Drosophila melanogaster 50 CG12877 FBgn0039544 FBtr0100446,FBtr0085223,FBtr0085222 1 3 3 82 3R 23536240 23536258 CGGATTATACAGGAGAGCG 59 23536379 23536399 CGCAGATAATACTTGATGAGC 58 NA DesignNoJunction Drosophila melanogaster 50 RpS10a FBgn0027494 FBtr0085194 3 1 1 103 3R 23478837 23478855 CAAACTACTCGATCGAACG 58 23478921 23478940 CTGTAGTTCGATCTGTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6073 FBgn0039417 FBtr0085003 2 1 1 120 3R 22013581 22013599 TGATCCTAAACGAGCAGAG 58 22013423 22013497 CTTTCAGGTAGGTACTGCA 58 NA Drosophila melanogaster 50 CG33494 FBgn0053494 FBtr0089607 1 1 1 117 3R 21320015 21320033 ATCCTCTTATGGTCGACAG 58 21319780 21319799 TGTCTGAGTTTCTTATCGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG11836 FBgn0039272 FBtr0113284,FBtr0084767,FBtr0084768 2 3 3 139 3R 20897387 20897467 ACTGTGACTGTGATTGTGG 59 20897569 20897588 CTTCGTCAGTAAGGATCCTC 59 NA InUTR Drosophila melanogaster 50 CG11781 FBgn0039259 FBtr0084797 3 1 1 62 3R 20850319 20850337 CTGACCAATCAGTTCATGG 58 20850275 20850293 GCCATAGAGGAATGTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11120 FBgn0039250 FBtr0084717,FBtr0084716 1 2 2 128 3R 20749907 20749925 AAGACATTGATAAGCGCTG 58 20750067 20750148 GTATAACACCTCTATTGGGCT 58 NA Drosophila melanogaster 50 Mpk2 FBgn0015765 FBtr0084580 3 1 2 92 3R 19977622 19977643 GGAGTAATAGCGCAAATATAGG 58 19977451 19977570 ACCTTAGTTAATGGTGCCTC 59 NA InUTR Drosophila melanogaster 50 CG10217 FBgn0039113 FBtr0084464,FBtr0084465 2 2 2 157 3R 19587469 19587487 TAGTACAGTCTGCTCTTGG 57 19587272 19587349 CACCAAGAATTCTCGTTCTG 58 NA Drosophila melanogaster 50 Rpn9 FBgn0028691 FBtr0084469,FBtr0084470 3 2 2 120 3R 19557825 19557843 TTCTTGAGTCGCTTAAGGG 59 19557662 19557680 AAATCGGGAATCTTGGACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10251 FBgn0043005 FBtr0113347 1 1 1 80 3R 19522995 19523014 TGCCTACAAATATGGTCAGG 59 19522868 19522954 GCACTGGGTATCAGAATAGAG 59 NA Drosophila melanogaster 50 lmd FBgn0039039 FBtr0084364,FBtr0084363 2 2 2 85 3R 18849540 18849558 GCCAGTATAAAGGTTGCCT 59 18848193 18849493 ATACGGTTTCGTATCGTAGTG 59 NA Drosophila melanogaster 50 CG6353 FBgn0038893 FBtr0084116 3 1 1 161 3R 17487932 17488449 GGATGTTCAAATCCACGGA 59 17487789 17487809 AAGTGAAAGAGTAAGCTCTCC 59 NA Drosophila melanogaster 50 Obp93a FBgn0038859 FBtr0084030,FBtr0084031 1 2 2 81 3R 16954926 16954944 AATAGTTGCACGGACTACG 59 16954809 16954827 CAGGATAGAAGTCGCAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Atpalpha FBgn0002921 FBtr0089514,FBtr0089516 2 2 8 97 3R 16794124 16794144 TTTCCTTAGCTTATGAGACGG 59 16794202 16798907 CATCGAAATCAACCTTTCGT 58 NA Drosophila melanogaster 50 CG5621 FBgn0038840 FBtr0110956 2 1 2 105 3R 16733261 16733281 GTCTACCTTGTCATGTTTGTG 59 16733348 16733664 TGAAGCTCACCTTGTTCTC 59 NA Drosophila melanogaster 50 GluClalpha FBgn0024963 FBtr0100128,FBtr0083788,FBtr0100127 1 3 4 97 3R 15593276 15593294 GTTATATCGCGGATCACCT 59 15593354 15600648 TAGAAGGTCTCATCCTCCTC 59 NA Drosophila melanogaster 50 CG31219 FBgn0051219 FBtr0113400,FBtr0083783 1 2 2 60 3R 15477721 15477739 CAAACTTGAAATAGCCGGA 58 15477760 15477781 CATCAGTACTTGGCTAAATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dys FBgn0024242 FBtr0110918,FBtr0110917,FBtr0083764,FBtr0110919 1 4 8 80 3R 15310655 15310768 GATAGTGATACGAGTCGCA 58 15310812 15310830 AGACAATGATTCCAGGACC 58 NA Drosophila melanogaster 50 endoA FBgn0038659 FBtr0083699,FBtr0083698 1 2 2 60 3R 14733033 14733053 GTATATGACGGAGAAGATGGG 59 14733075 14733093 CTCCATGAAGTCCATGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tinc FBgn0038554 FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769 3 4 4 114 3R 13691908 13692611 CTTCCTAGCAGCTCTTGTC 59 13692689 13692707 GTAAGTGCTGTCCAATGGA 59 NA Drosophila melanogaster 50 pxt FBgn0038538 FBtr0083507,FBtr0083508 1 2 2 92 3R 13547547 13547626 CCATTCCAGTGTTGATGGT 59 13547679 13547700 GAAGGATTGAACATCACATCTG 59 NA Drosophila melanogaster 50 Fas1 FBgn0000634 FBtr0083334 2 1 4 91 3R 12460104 12461279 GTTTATGAACGAGAATGCTGAG 59 12461329 12461349 TATTGATGTCGTCCAGAACTG 59 NA Drosophila melanogaster 50 Gr89a FBgn0038440 FBtr0089695 2 1 1 60 3R 12323929 12323949 ATGTCCTACTATGTATCGCTG 58 12323889 12323907 GGACTAGGCAGTTATTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gyc-89Da FBgn0038435 FBtr0110963,FBtr0110962 1 2 2 60 3R 12299781 12299800 CTTCACATTTGTGCTGAACC 59 12299823 12299841 CTCAACGATCTTCTCACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204 2 6 8 195 3R 11782022 11785052 GACTGATGAGGAACAATGG 57 11785211 11785229 CCAATCGTTGTTAGTCGAG 58 NA Drosophila melanogaster 50 CG34276 FBgn0085305 FBtr0112471 1 1 1 90 3R 11752006 11752024 CTGCAGCAGAGTTATTCGA 59 11752148 11752166 AGTTGTAGAACCAATTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4221 FBgn0038385 FBtr0083201 1 1 1 92 3R 11757605 11757695 ATACAAGTCACAGATGCGG 59 11757751 11757769 ATCTGTGATGTTCAGGCAG 59 NA Drosophila melanogaster 50 CG31291 FBgn0051291 FBtr0083244 3 1 3 105 3R 11742057 11742135 ACCTATCGGTAATTGAGCG 59 11741970 11741988 GAGGCATAGCTCTTCTTGG 59 NA Drosophila melanogaster 50 CG14869 FBgn0038341 FBtr0083159,FBtr0083160 2 2 2 83 3R 11271113 11271131 CACAGTTCTGTGACAAGTC 58 11270981 11271066 TCGTCACAGTGAGATTGAG 59 NA Drosophila melanogaster 50 Surf4 FBgn0019925 FBtr0083118,FBtr0083117 1 2 2 80 3R 11170643 11170661 TTTAAGGTCGACATAGCGG 59 11170516 11170534 GAAGTCCCACAGAATGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 MRG15 FBgn0027378 FBtr0083125 2 1 1 87 3R 11103271 11103348 GATAATAAGAAAGGCAGCGC 59 11103203 11103221 TGTTGCTATCCTTAGACGG 58 NA Drosophila melanogaster 50 Zeelin1 FBgn0038294 FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034 1 4 5 120 3R 11002150 11004014 TACAGCCGAACAATTCCAG 59 11001978 11001996 GCTTGTCCCTCAAGTAGAG 59 NA Drosophila melanogaster 50 CG33331 FBgn0067628 FBtr0082998 3 1 1 62 3R 10712693 10712711 TCTTTACTTGGCAGGAAGG 59 10712734 10712755 GGATTATCAGAAGGATTGACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 btsz FBgn0053555 FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530 3 5 5 111 3R 10634167 10634187 GCAGTACAACTATAAGCTGAG 58 10634011 10634096 TAGATACACCTTAACGTAGGG 58 NA Drosophila melanogaster 50 Neu3 FBgn0051314 FBtr0100189,FBtr0082973 3 2 2 83 3R 10496558 10497105 CTATCTGCTTAAGCAGGCA 59 10496493 10496511 TAGTCGTGACTATGGTCGT 59 NA Drosophila melanogaster 50 CG34383 FBgn0085412 FBtr0112622,FBtr0112621,FBtr0112624,FBtr0112623 3 4 4 134 3R 9583496 9584190 GAACTCTAAGAAACTGGAGCA 59 9584286 9584304 TTGATGTGAGAGCCATCAC 59 NA Drosophila melanogaster 50 rin FBgn0015778 FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082800,FBtr0082796 1 5 5 65 3R 9476736 9476754 TACCTACGACGATCCTGAG 59 9476897 9476915 TTCTCCGGGAAGTATAGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14374 FBgn0040553 FBtr0082761 1 1 1 93 3R 9222619 9222637 CTTACACTGCTCCTGTGAC 59 9222544 9222562 AAGAAAGAGCTGACGACAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CtBP FBgn0020496 FBtr0082701,FBtr0082702,FBtr0082699,FBtr0082700,FBtr0100161 1 5 5 80 3R 8845522 8845621 GAAATACACGAGAAGGTCC 57 8845665 8845683 CTCAAGATCCTCCTTTGTC 57 NA Drosophila melanogaster 50 CG7488 FBgn0038106 FBtr0082695 3 1 1 60 3R 8821953 8821972 CTGAATAAGATAGACGCCCT 58 8821994 8822013 TGAGTGTCTTGATCAGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18616 FBgn0028495 FBtr0082643 2 1 1 157 3R 8458165 8458183 GTCAGCCTAGAGTCTTTGG 59 8458303 8458387 ATGTGACCTAGCAATTTGTG 58 NA Drosophila melanogaster 50 Cyp9f2 FBgn0038037 FBtr0082599,FBtr0082598 1 2 2 89 3R 8229403 8229421 CAGCCATTCACATACTTCC 58 8229275 8229293 GTAGATAACAGCCTTTGCT 57 NA DesignNoJunction Drosophila melanogaster 50 GstD8 FBgn0010044 FBtr0082575 3 1 1 60 3R 8205802 8205820 TATAATGACAGCCAAGGCC 59 8205843 8205862 GTCCATGACCTTCAATAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GstD10 FBgn0042206 FBtr0082609 3 1 1 71 3R 8191237 8191255 TATAGACCCGGATCTGCTC 59 8191184 8191202 CTTATCGAACTCCACACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31116 FBgn0051116 FBtr0082528,FBtr0082526 2 2 5 108 3R 7624476 7624583 ATTATGCTGCAAGTAAACCC 58 7624202 7624223 GTGATTGCTTTGAACTATCTCC 59 NA Drosophila melanogaster 50 CG14715 FBgn0037930 FBtr0082423 1 1 1 94 3R 7500237 7500255 GTTCGATAGCAGCTACTCC 59 7500313 7500331 ACATACCAAGGATTCCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL40 FBgn0037892 FBtr0082384 3 1 1 166 3R 7234211 7234229 GACTTTCAGATCATCGACC 57 7234358 7234377 CTGACGTAATCCTTAATGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4757 FBgn0027584 FBtr0082339 3 1 1 99 3R 6988483 6988502 GATTCCTTTGTTGAAGCGAG 59 6988564 6988638 TTTGTTGTGAGGATCACCC 59 NA Drosophila melanogaster 50 CG6608 FBgn0037852 FBtr0082334 1 1 2 65 3R 6707330 6707348 ACCGACCGAGATAATAGTG 58 6706827 6707302 TTAAGTATCATGCTCCACGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG4655 FBgn0037839 FBtr0082282 2 1 1 80 3R 6665262 6665349 CGATACTAGCCAATGATGCT 59 6665391 6665410 GCACGATAACCACTATCTCC 59 NA Drosophila melanogaster 50 hth FBgn0001235 FBtr0082254,FBtr0082255,FBtr0082253,FBtr0082256 1 4 6 81 3R 6340062 6346807 TTCAGCATTTAACGCATCC 58 6339999 6340017 ACTTGCAGTATCGTTAGGC 59 NA Drosophila melanogaster 50 hth FBgn0001235 FBtr0100455,FBtr0082254,FBtr0082255,FBtr0100454,FBtr0082253,FBtr0082256 1 6 6 89 3R 6417178 6419287 GAAGTCGACTCACTGATGG 59 6411627 6411647 GAAGTTATCGCATAACTCGTG 59 NA Drosophila melanogaster 50 tws FBgn0004889 FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190 1 8 8 80 3R 5954403 5954421 CTCCAGGGATTACTTGAGC 59 5954227 5954361 TATTCATGAACCGGATAGGTC 59 NA Drosophila melanogaster 50 CG12811 FBgn0037779 FBtr0082204 3 1 1 169 3R 5874166 5874185 CCTTTGTTGAGGATCAAGAC 58 5873472 5873490 CTCCGGGTAATACAGTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34360 FBgn0085389 FBtr0112576,FBtr0112577 3 2 5 60 3R 5808081 5812376 AACACATTTGGGAAAGGAC 58 5812400 5812418 GAAGTCCTCCTCATTTCCG 59 NA DesignRelaxed Drosophila melanogaster 50 unc-115 FBgn0037733 FBtr0082096,FBtr0082097 3 2 4 102 3R 5515591 5516165 CTTAGCGAGATGCACTACC 59 5515507 5515527 GATAGCTGTAGGTGTAGATGC 59 NA Nonspecific Drosophila melanogaster 50 CG8866 FBgn0037679 FBtr0082055 2 1 2 138 3R 5158509 5158527 CTATACCTCTACGAGCGGA 59 5158332 5158407 TCATCCAGAATTCCAGCTG 59 NA Drosophila melanogaster 50 CG34135 FBgn0083971 FBtr0110905,FBtr0110904 3 2 2 60 3R 4576504 4576524 AGGAGTGATGTATTTACTGGC 59 4576398 4576417 GAAGTGAATGATCATGAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or85a FBgn0037576 FBtr0081836 3 1 1 99 3R 4148557 4148578 CACGATGTTGTACTTCATTCAC 59 4148635 4148710 CTTGGCCATCTTTATATTGGTG 59 NA Drosophila melanogaster 50 dsx FBgn0000504 FBtr0081760,FBtr0081761 2 2 3 60 3R 3761506 3761524 CAACATTGAAGAGGCTTCC 58 3761350 3761369 GGAGTACTCATTCACAACGT 59 NA DesignNoJunction Drosophila melanogaster 50 Sp7 FBgn0037515 FBtr0081740,FBtr0081742,FBtr0081743 1 3 4 89 3R 3586916 3586934 CAACACGCAAAGTAGTTGG 59 3586987 3587737 TCCTACAACTTCCTTGTGC 59 NA Drosophila melanogaster 50 CG14598 FBgn0037503 FBtr0081534 3 1 1 60 3R 3266775 3266794 ACCAAGAAATCGTACTACCA 58 3266816 3266835 TGGTCTTCAACTTATCCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32468 FBgn0052468 FBtr0081592 2 1 1 74 3R 3139065 3139083 AATTGGCCCACAGATAGAG 59 3139009 3139030 CTTAAGAGTAGGCTTAAAGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pb FBgn0051481 FBtr0089278 2 1 4 138 3R 2537664 2565281 AACAATCAGGCTGAATTCG 58 2537544 2537562 CTATCTCGATCCTCCTTGG 58 NA Drosophila melanogaster 50 CG10284 FBgn0037441 FBtr0081718 3 1 1 262 3R 2201117 2201135 TATGTCGAGCAGGAATCTC 58 2202328 2202347 GTAACCTTCTCGTAGACCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Osi19 FBgn0037429 FBtr0081707 1 1 1 118 3R 2161913 2162012 CAAGAAGGGCAAGAAACAC 59 2162094 2162112 TGAAGGCCTTGATCTTCAG 59 NA Drosophila melanogaster 50 noi FBgn0014366 FBtr0078751 2 1 1 60 3R 1416497 1416518 CGAGTACCGCATATACATAGAG 59 1416458 1416476 GATTCGGAGGATGAAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or83b FBgn0037324 FBtr0113193,FBtr0078794 2 2 2 117 3R 1233893 1233911 AACGGAGTGAATGTCTACG 59 1233433 1233812 CCATGACGGATGAACTCTC 59 NA Drosophila melanogaster 50 RpII18 FBgn0003275 FBtr0078787 3 1 1 72 3R 1197775 1197793 CATCGAGATCATAGCTCCC 59 1197829 1197847 GTACTTTGTGGTAATGCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199 2 14 15 115 3R 1100031 1100465 GAGCACAACGTATTTGGTG 59 1099934 1099952 CAATGGAACACCTTGAAGC 59 NA Drosophila melanogaster 50 CG14655 FBgn0037275 FBtr0078881 1 1 1 88 3R 604266 604284 TAACCACCAGAGGATTCAC 58 604026 604044 GGACAAGGAAAGAGACTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31526 FBgn0051526 FBtr0078929,FBtr0111213 2 2 2 185 3R 359280 359298 ATCTTCCCTTAGCCTTTGG 58 359447 359465 AAATAACTACGATCGTGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9795 FBgn0037234 FBtr0078907,FBtr0078906,FBtr0078905 1 3 4 99 3R 151095 151113 GATCAATCCGGGAATTCCA 59 151176 151429 ATTTCTCAAGGGTACGGAG 58 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338 3 5 15 173 3R 110113 120854 TTAAGTGCCGTTAAAGGAGG 59 120990 121008 CTTATCGCGAATGTCTTGC 59 NA Drosophila melanogaster 50 CG9766 FBgn0037229 FBtr0078980,FBtr0113191,FBtr0078979 2 3 3 184 3R 95720 95738 ATTCTGCTGAACAAGAAGG 57 95495 95572 CTAGCGTTCATAACCACTG 57 NA DesignRelaxed Drosophila melanogaster 50 tRNA:CR32093 FBgn0052093 FBtr0076083 1 1 1 60 3L 11794620 11794641 GTTCTATGGTGTAATGGTTAGC 58 11794581 11794599 GAGATTTGAACTCGGATCG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11247 FBgn0037120 FBtr0113184,FBtr0078459,FBtr0078458 3 3 3 151 3L 21718590 21718668 CCTATCAGTGTAGGATCTGC 59 21718458 21718476 CATGTGGTTCTTTAGGTGC 58 NA Drosophila melanogaster 50 CG5976 FBgn0036999 FBtr0078200,FBtr0078199 1 2 2 60 3L 20468718 20468737 TCTATCCGATAAGCTACACC 58 20468759 20468778 CACAACTCGAGGTATAAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(z)12 FBgn0020887 FBtr0074917,FBtr0074916 1 2 2 80 3L 19914996 19915076 GAGAATGCAGAAACTCCAC 58 19914934 19914955 CTTCTCGTACAATATCAGTTCC 58 NA Drosophila melanogaster 50 Gyc76C FBgn0013974 FBtr0100157,FBtr0100156,FBtr0100155 1 3 3 80 3L 19718583 19750645 AGATACACAGGTCGTTAAGTC 59 19718523 19718541 ACATCCTCGTACAGAATGG 58 NA Drosophila melanogaster 50 Nedd4 FBgn0036736 FBtr0075179,FBtr0075178 3 2 4 110 3L 17527654 17531772 AACAGTGATAACGACTCTGG 59 17531914 17531932 GATTCTGACATACGGGTCG 59 NA Drosophila melanogaster 50 CG33256 FBgn0053256 FBtr0075260 2 1 1 60 3L 16898138 16898159 GGAAATTGATGACGAAGATGAG 59 16898180 16898198 GTTGTTATCCGAGATTCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nudC FBgn0021768 FBtr0075328 1 1 1 107 3L 16802360 16802379 AATCCGATAAGAGTGAGCTG 59 16802449 16812016 GAATCTTGAGCTCCACCTC 59 NA Drosophila melanogaster 50 CG32158 FBgn0052158 FBtr0075402,FBtr0075406,FBtr0075405,FBtr0075403,FBtr0075404 2 5 7 125 3L 16485860 16485878 TTTGACTGGGATGTGAGTG 59 16485591 16485772 AATGATTGTCGTATCCCTCC 59 NA Drosophila melanogaster 50 fax FBgn0014163 FBtr0100477,FBtr0100478,FBtr0075413,FBtr0075412 3 4 4 190 3L 16398660 16398678 ATGAAGGACAAGTGCTTCC 59 16398260 16398433 TTCTCGTTTGACTTGTCCT 58 NA DesignRelaxed Drosophila melanogaster 50 fax FBgn0014163 FBtr0100477,FBtr0100478,FBtr0075413,FBtr0075412 1 4 4 191 3L 16398660 16398678 ATGAAGGACAAGTGCTTCC 59 16398259 16398433 CTTCTCGTTTGACTTGTCCT 59 NA Drosophila melanogaster 50 Pdh FBgn0011693 FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536 1 4 4 130 3L 16346821 16346839 ATCATTCCCGTTTACGGAG 59 16346645 16346663 ATGTCCGTCATTGTAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33690 FBgn0053690 FBtr0091670 1 1 1 102 3L 16194899 16194983 CCTATGATCACGATCTTATCG 57 16195045 16195065 GTGTATATGGCATAATCTCCG 58 NA Drosophila melanogaster 50 Notum FBgn0044028 FBtr0075436,FBtr0075435 1 2 2 83 3L 16023316 16023335 GGATACCGACTATATCCCAC 58 16023445 16023463 ATTATCCACTCGCATTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 pgant8 FBgn0036529 FBtr0075578 1 1 1 91 3L 15678621 15678731 ATTTCAAGGAACTACCGCC 59 15678784 15678804 GGAATCACTGTTAAATGTGGC 59 NA Drosophila melanogaster 50 CG12316 FBgn0036483 FBtr0075651,FBtr0075652 3 2 2 102 3L 15128061 15128081 GGACCATATTGAATCATCTGC 58 15127562 15127997 GAACTGAGAACCACTTCGT 59 NA Drosophila melanogaster 50 CG13467 FBgn0036455 FBtr0075696 2 1 1 60 3L 14897940 14897959 CTTCTCGATAAGATCTCGCC 59 14897982 14898000 TGGAGAACACATATCGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32138 FBgn0052138 FBtr0075776,FBtr0075775,FBtr0114573 1 3 3 80 3L 14054599 14058180 GATATGCGATCAAGAAATGGTG 59 14058221 14058239 TTTGGGTCCAGATATGTGC 59 NA Drosophila melanogaster 50 CG32112 FBgn0052112 FBtr0075917,FBtr0075915,FBtr0075916 2 3 3 90 3L 12737833 12737915 CAGAAGCTATTTAGATCCTGC 58 12737967 12737985 TATCACATTTCAGGCCCTC 59 NA Drosophila melanogaster 50 CG4328 FBgn0036274 FBtr0076008 1 1 1 85 3L 12285040 12285058 CAGTATGTGGTCAAACAGG 58 12284917 12284992 CCATAGAAATCGTATCCCTG 57 NA Drosophila melanogaster 50 CG6928 FBgn0036240 FBtr0076049,FBtr0076050 3 2 2 95 3L 11999277 11999598 GAACTTTGAACAGATGCTCTC 59 11999655 11999673 CCAAAGGCTTTCGAAATGG 59 NA Drosophila melanogaster 50 CG5964 FBgn0036206 FBtr0076085 3 1 1 60 3L 11785272 11785290 CAAGAGCGGACTCTATTGG 59 11785230 11785248 CCTGAAACTTTCGATCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mtTFB1 FBgn0036197 FBtr0076112,FBtr0114551,FBtr0114552 3 3 3 61 3L 11703301 11703319 CCTAAGACTCAATTGCCGT 59 11703344 11703362 CGCATGCTAAAGATGTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rt FBgn0003292 FBtr0076146 1 1 1 114 3L 11578106 11578183 GCTATACACAGACTGAGGA 57 11578010 11578028 GATTGTAGCTCCAGTAGCT 58 NA Drosophila melanogaster 50 CG7551 FBgn0036161 FBtr0076176 2 1 1 60 3L 11452190 11452210 GATGGAGTTCGATAACAACCT 59 11452231 11452250 GGCATAGTCACAGTAATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7560 FBgn0036157 FBtr0076173 2 1 1 81 3L 11418886 11418906 GAGGGATACACTAGTTTAGGC 59 11418949 11419034 CTCCAGCATCAATCTTTGC 59 NA Drosophila melanogaster 50 CG34012 FBgn0054012 FBtr0100067 1 1 1 97 3L 11102163 11102256 GCTAGTGCCTATGATTAACAC 58 11102086 11102104 TCTCCATGAAGAGCATCTC 58 NA Drosophila melanogaster 50 CG6409 FBgn0036106 FBtr0076273 3 1 1 95 3L 10874894 10874912 CAAGGAGTCTACCTCTGAG 58 10874817 10874835 TTCAGCAAGACTACCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6463 FBgn0047038 FBtr0076276 3 1 1 188 3L 10686961 10687108 ATCATTAAGGCGTCCACAG 59 10686592 10686809 AGTGATGTCCTTGTGTTGG 59 NA Nonspecific Drosophila melanogaster 50 CG32056 FBgn0052056 FBtr0076303,FBtr0076301,FBtr0076302 3 3 3 86 3L 10214550 10214568 TTCTTCGGCATCAATTTCC 58 10214221 10214501 GAACATGGCATCTATGAGGA 59 NA Drosophila melanogaster 50 nudE FBgn0036059 FBtr0113158,FBtr0113159 2 2 4 96 3L 9894107 9894450 ATTCGCTTAAGAATCCCGAG 59 9894509 9894527 TTTCTTAACATGTCGGCCA 59 NA Drosophila melanogaster 50 nudE FBgn0036059 FBtr0114600,FBtr0113158,FBtr0076344,FBtr0113159 3 4 4 135 3L 9893678 9893697 AGAGAATTTCGAGAAGATGC 57 9893794 9893877 CAGCTCTTGTTTGAGATCTC 58 NA Drosophila melanogaster 50 CG8108 FBgn0027567 FBtr0076339,FBtr0076340 2 2 2 103 3L 9858406 9858424 CACTACGACAACAGGAGTC 59 9858491 9859424 CGAGATGAGTCATAGCTGC 59 NA Drosophila melanogaster 50 CG6718 FBgn0036053 FBtr0076362,FBtr0076363,FBtr0076365,FBtr0076364 3 4 4 106 3L 9854428 9854506 TGACTCCAATTAACAACCGA 59 9854341 9854359 AAATGCGCGGAAATATGAG 58 NA Drosophila melanogaster 50 I-2 FBgn0028429 FBtr0112935,FBtr0076370 2 2 2 71 3L 9829169 9829187 ACTAAAGACTTCGCGTAGC 59 9829048 9829066 TTCAGCTCATCGAACTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3552 FBgn0035999 FBtr0076464,FBtr0114371 2 2 3 85 3L 9451449 9451520 TATGCGGAGCTTAATTCAG 57 9451569 9451587 ATCATGTGCTTAAAGGTGG 57 NA Drosophila melanogaster 50 CG32038 FBgn0052038 FBtr0076462 2 1 1 118 3L 9445112 9445130 CTGGTGGTTTCGATACCTC 59 9445429 9445448 CGGAGTAGTTGAAGTACCAG 59 NA DesignNoJunction Drosophila melanogaster 50 nwk FBgn0035966 FBtr0076532 3 1 1 140 3L 9132701 9132720 GAGTACCTGATGTTAATGGG 57 9133108 9133126 CAGCACCGGATAGAATAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Dhpr FBgn0035964 FBtr0100531,FBtr0100532,FBtr0076531 1 3 3 88 3L 9128543 9128561 ATGAACCGTAAATGGATGC 58 9128613 9128631 TCTTGGGTCCACTTAAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jon66Cii FBgn0035887 FBtr0076666 3 1 1 74 3L 8386466 8386484 TAACTGTCTACTTCGGAGC 58 8386410 8386429 TGATAAAGTTACCGTTGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Idh FBgn0001248 FBtr0114547,FBtr0076670 3 2 9 115 3L 8351126 8351144 ATAATGAAAGGATGTCCGC 57 8350919 8350937 TTGGCTCTTAATGGAGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7565 FBgn0035833 FBtr0076738 1 1 1 80 3L 8082713 8082789 GTAATACGACTACTAGCTTGC 58 8082653 8082671 AACTCTTGATGCCAATGTC 58 NA Drosophila melanogaster 50 Tektin-C FBgn0035638 FBtr0077115,FBtr0113147 1 2 2 68 3L 5788652 5788670 AGGATTTGTCCAAACAGCA 59 5788197 5788215 CCAGATTCTCGTACGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Pmi FBgn0044419 FBtr0091713,FBtr0091712 3 2 2 120 3L 5773860 5773941 TGTTGTCAATATCAGGTGGA 58 5774024 5774042 TACGGTGCAAGTATTTGGT 59 NA Nonspecific Drosophila melanogaster 50 CG10625 FBgn0035612 FBtr0077137,FBtr0077138 2 2 7 80 3L 5538086 5538104 ACCGTCAGTACTATTCGTC 58 5534359 5534445 CGTTAATACCGTTATAGCGTC 58 NA Drosophila melanogaster 50 Src64B FBgn0003501 FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321 3 5 5 178 3L 4596210 4596228 TAAATCCCGCGATGAATCC 59 4595932 4596069 TCTCAAAGAACCAGTCTTCG 59 NA Drosophila melanogaster 50 CG32251 FBgn0052251 FBtr0073286 3 1 1 129 3L 4318188 4318270 GGAACATGAGAATCGAAAGAG 58 4318358 4318379 TCAAAGGAGCTGATCTATTAGG 59 NA Drosophila melanogaster 50 CG32262 FBgn0052262 FBtr0073184 3 1 1 60 3L 3809383 3809401 ATGTCCTACATGAAGCACG 59 3809341 3809359 ACGCAACTAACTTCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14973 FBgn0035451 FBtr0073130 3 1 1 125 3L 3507092 3507110 AGTTGAAGTCCACGAACTC 59 3507199 3507307 GATTCTCCGCCTTAATCGT 59 NA Nonspecific Drosophila melanogaster 50 CG14971 FBgn0035449 FBtr0073143 3 1 1 69 3L 3469319 3469397 TAATTGGAATCGAAGGTGC 57 3469268 3469286 ATCTCATTCGAAGTGTGGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG14960 FBgn0035428 FBtr0073051 2 1 1 187 3L 3274418 3274436 TGAGTGAAAGCCTATTCGG 59 3275596 3275616 CAGGAACAGAGACTTCATACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32280 FBgn0052280 FBtr0073030,FBtr0073031,FBtr0073032 2 3 3 125 3L 3168251 3168338 GATTGCCCTATTTGGTTGC 59 3168426 3168445 CAATCCTATCGACGGTATCG 59 NA InUTR Drosophila melanogaster 50 CG12079 FBgn0035404 FBtr0073113 3 1 1 221 3L 3159215 3159291 CTAAGAAGGCGGATAAGCC 59 3159012 3159030 CAACCAGGTTGGTAAACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7955 FBgn0035244 FBtr0072754,FBtr0072756,FBtr0072755 2 3 3 107 3L 1621163 1621181 CTTGTTCAAAGGAGCTGTG 58 1621252 1621329 CTAGCAATGCCATATCCCA 59 NA Drosophila melanogaster 50 312 FBgn0029514 FBtr0072680 2 1 1 225 3L 1351621 1351639 AACCTGAAGTACGTTGACC 59 1351891 1351909 ACTCCAGATCGTATTCCTC 57 NA DesignNoJunction Drosophila melanogaster 50 scf FBgn0025682 FBtr0089942,FBtr0089940,FBtr0089941 3 3 3 60 3L 1299623 1299641 TGGTTATTTGAACGAGGAG 57 1299665 1299683 CGAATGATCGAAGTCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9205 FBgn0035181 FBtr0072621,FBtr0072622 3 2 2 238 3L 1035939 1036032 GTTTCTCACGGAACAATGC 59 1036234 1036252 AACTGGAGACTATCCTTGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG34269 FBgn0085298 FBtr0112464 3 1 1 75 3L 528450 528469 TACTGGACTCCCTTACTGAC 59 528505 528525 CTCAAACGACTTGTGTAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGEF3 FBgn0035128 FBtr0089654 2 1 4 109 3L 298100 298118 TTGTCATGAAGGATCCACG 59 299009 300906 TATTTGCTGTGACAAACTCG 58 NA Drosophila melanogaster 50 CG16971 FBgn0035114 FBtr0072497 1 1 3 122 3L 225776 225794 AACAAGAAACTACGTCGCA 59 226794 226812 CATTTATACATGCCCGCAG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 snoRNA:Psi28S-2444 FBgn0082987 FBtr0113515 3 1 1 65 2R 15330668 15330686 CTGATGCTCAGTGAATGTG 58 15330715 15330733 GCATGGAATGTAGCAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13594 FBgn0035041 FBtr0072336 1 1 1 83 2R 20503718 20508238 TCACGTAAATCCAGGTGAC 59 20503653 20503671 TTAATTAGCTGCAGTGTGC 58 NA Nonspecific, InUTR Drosophila melanogaster 50 pio FBgn0020521 FBtr0072312,FBtr0072313 2 2 2 185 2R 20476321 20476910 ACTTAATCACAATCGCAGC 58 20479585 20479603 TAATGGTGATCAGCATCGA 58 NA Drosophila melanogaster 50 CG13576 FBgn0034994 FBtr0072274 3 1 1 60 2R 20138437 20138455 TTACAACATCACGAATGGG 57 20138395 20138413 CACATAATTGTCCGCTAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bgcn FBgn0004581 FBtr0072232 1 1 1 101 2R 19741207 19741281 TGAAATCTTAGATGCGTGTG 58 19741125 19741143 ATAATCAAGTTGCCGACAC 58 NA Drosophila melanogaster 50 CG9812 FBgn0034860 FBtr0072026 1 1 2 67 2R 19301196 19302034 CTGATCAACCAAGATCGAC 57 19301147 19301165 ACGTATACGACACGTTGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG3530 FBgn0028497 FBtr0072028,FBtr0112940,FBtr0072029 2 3 3 153 2R 19279383 19279401 TTGAGAAGCTTCCCTTGAG 59 19279181 19279266 AATTTGTTGATGGACACCG 58 NA Drosophila melanogaster 50 CG3092 FBgn0034835 FBtr0071999 2 1 1 60 2R 19121299 19121317 CGTCCTCAACTATGATCCG 59 19121341 19121359 CTAAGGCTTATCGTCGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp58d FBgn0034770 FBtr0071872 1 1 1 142 2R 18594759 18594831 TTCTATCGTGCTTTGTGGA 58 18594936 18594955 CATGGCAATGTGATAATCCT 58 NA Drosophila melanogaster 50 CG3292 FBgn0034710 FBtr0071783 1 1 1 87 2R 18092629 18092647 TCAGCTTAAGGGCAATACC 59 18092496 18092578 ATTGGAGCAGTATGTCCTG 59 NA Drosophila melanogaster 50 CG15675 FBgn0034648 FBtr0071664 2 1 2 80 2R 17553013 17553715 AAGAACACTGGAATCTGTG 57 17553759 17553777 CATTTGTGACGAACATGTG 57 NA Drosophila melanogaster 50 CG33226 FBgn0069056 FBtr0071694 2 1 1 139 2R 17426153 17426231 AATGGTAAACCGATCTGTG 57 17426032 17426052 CTAGTTGTCTGGAGTATTGTG 57 NA Drosophila melanogaster 50 CG10494 FBgn0034634 FBtr0071699,FBtr0071700 1 2 2 88 2R 17405524 17405545 GCGATAGTGATTTCAATGACAG 59 17405398 17405416 ATCAACCTCTTCGTCTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9485 FBgn0034618 FBtr0071601,FBtr0071599,FBtr0071600 3 3 3 81 2R 17205225 17205243 ACTTTGATGCCATTGTCAG 58 17205286 17205366 CCATTCTTAATGAAGTCTGGC 59 NA Drosophila melanogaster 50 Act57B FBgn0000044 FBtr0100177,FBtr0071519 3 2 2 61 2R 16832529 16832547 ACGGTATCATCACCAACTG 59 16832572 16832590 CTCGTTGTAGAAGGTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 exu FBgn0000615 FBtr0086243,FBtr0086242,FBtr0086244 1 3 3 133 2R 16557493 16557511 TATGCTGAAGTCGATGCAG 59 16557295 16557313 AGATAAGCACAATCCCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 maf-S FBgn0034534 FBtr0086230 3 1 1 74 2R 16528827 16528845 TTAAAGAATCGCGGATACG 57 16528883 16528901 CTTCTTAGTCTCCAGCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp56b FBgn0046880 FBtr0086480 3 1 1 60 2R 15586428 15586447 TAAAGAGTTTGCTTACCAGC 58 15586387 15586405 TAGACAAAGTCACAGGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Scs-fp FBgn0017539 FBtr0086552,FBtr0086553,FBtr0086554 3 3 3 136 2R 15280457 15280475 CTGAAGATGCAGAAGACCA 59 15280283 15280358 CAGATAAGCGACCTATCGAC 59 NA Drosophila melanogaster 50 Scs-fp FBgn0017539 FBtr0086552,FBtr0086553,FBtr0086554 1 3 3 93 2R 15280210 15280228 GATGACTATTGTGAGCGCT 59 15280075 15280155 GCTGAAATCGTATTCATCCTC 58 NA Drosophila melanogaster 50 CG30127 FBgn0050127 FBtr0086556 2 1 1 101 2R 15216060 15216078 GACCGATGCACAATATGAC 58 15215763 15215781 CAGTGGACGTGTTAATGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG15100 FBgn0034401 FBtr0086627 1 1 1 107 2R 14735331 14735409 CTCAATGCTGAGAAACCAC 58 14735242 14735260 AAGTTCGTCGATGAAGGAC 59 NA Drosophila melanogaster 50 CG15080 FBgn0034391 FBtr0086613 3 1 1 141 2R 14680627 14680646 ATAACTTCGAGAGTGAACCG 59 14680750 14680820 TTCTCTGGCTTCAGATTGG 59 NA Drosophila melanogaster 50 CG15092 FBgn0034388 FBtr0086641 3 1 1 216 2R 14646633 14646652 TTTATACAGACTAGACGCCG 58 14646373 14646454 AATTGCTTAAACCCTGCTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG30121 FBgn0050121 FBtr0086644 3 1 1 60 2R 14628011 14628030 CAGTCCTTGAGATGTTTCCA 59 14627970 14627988 TGTTCAGGTTCTGTCAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS28 FBgn0034361 FBtr0086714 2 1 1 100 2R 14502017 14502036 TTTGGTTGGAAGTTTCACTG 58 14501879 14501897 AACTCCAAGTCCTTGATGC 59 NA DesignNoJunction Drosophila melanogaster 50 Dp1 FBgn0027835 FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682 2 6 6 84 2R 14306395 14306413 GATCGATAAACGCATCCAC 58 14306458 14306564 GATGTTCACCTTATTATCCTCG 58 NA Drosophila melanogaster 50 GstE10 FBgn0063499 FBtr0086726 3 1 1 67 2R 14284868 14284886 CATGAATTCCATACGCTGG 58 14284819 14284839 GGATTCTTGCGTAACATATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpr13 FBgn0034286 FBtr0100051 3 1 1 83 2R 13865173 13865194 ATCTTCTGGTATCACGATAACC 59 13865038 13865129 AGATTGAAAGTCCGGTTCC 59 NA Drosophila melanogaster 50 RhoGAP54D FBgn0034249 FBtr0086900,FBtr0086901 2 2 2 100 2R 13477485 13477504 TAATAGTCCCACAGAGACAC 58 13477351 13477422 GGGTGAGATTCTTCTCCAG 59 NA Drosophila melanogaster 50 CG4844 FBgn0061354 FBtr0100122,FBtr0100123 1 2 2 60 2R 13395104 13395122 TGATCGATGATTCCAGCTC 59 13395146 13395164 TCATGGTTCAGCTTAAAGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30104 FBgn0050104 FBtr0086928,FBtr0086927 3 2 2 85 2R 13378861 13378938 GGATGCTATATCCTTGGGC 59 13378987 13379005 GTACAGGAAAGGTGACCTC 59 NA Drosophila melanogaster 50 CG5522 FBgn0034158 FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026 1 6 6 81 2R 12676157 12676301 CTACTACACTATAGCAGCCTC 58 12676344 12676362 ATCCAACTGCTTGATGGAG 59 NA Drosophila melanogaster 50 CG8092 FBgn0033998 FBtr0087403,FBtr0087402 3 2 2 82 2R 11099262 11099280 AGCAGACAAGAGTAACCAC 59 11099140 11099159 AATACTCCAGTCCTTGAACG 59 NA DesignNoJunction Drosophila melanogaster 50 Cyp6a17 FBgn0015714 FBtr0087451 1 1 1 60 2R 10762455 10762476 AGGATGTTCAGGATAAACTCAG 59 10762497 10762515 TCTTTGTTATGCTTGCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10209 FBgn0033971 FBtr0087462 3 1 1 130 2R 10735327 10735348 CAAGAAGACGATTATTCAGTGG 59 10735167 10735185 CCTGGTTTAGTTCGATCCC 59 NA DesignNoJunction Drosophila melanogaster 50 kn FBgn0001319 FBtr0112809,FBtr0087465,FBtr0112810 1 3 3 117 2R 10662968 10663054 CGTCTATGTCTCAGCTCTC 58 10662869 10662890 CTTGAGGATTATCTCTTTCTGG 57 NA Drosophila melanogaster 50 CG30480 FBgn0050480 FBtr0087478 3 1 1 60 2R 10564875 10564895 GCCTACAGGTTATATTCCCAG 59 10564835 10564856 GACATTCTCGACAATAGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33469 FBgn0053469 FBtr0087504 2 1 1 60 2R 10493522 10493542 CGGTGGTACATTTATTATGGC 59 10493482 10493501 TTCGAATCCTTTCCAGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ih FBgn0028428 FBtr0100370,FBtr0100369,FBtr0100371 3 3 4 107 2R 10179873 10184210 GGGAGGAGGTCTATTTCCT 59 10184281 10184299 CTAAGAACTGCAAGCAACC 59 NA Drosophila melanogaster 50 CG8494 FBgn0033916 FBtr0087535 3 1 1 100 2R 10128073 10128150 GATCCCAAAGAGTTTATTGCC 59 10128212 10128230 AAGAACTCCTGGGTATCGT 59 NA Drosophila melanogaster 50 CG18327 FBgn0033904 FBtr0087522 2 1 1 96 2R 10054979 10054997 GAGATCTCATTCGCAAAGG 58 10055057 10055184 GAAGTTGCGTCTTGATCAG 58 NA Drosophila melanogaster 50 tum FBgn0086356 FBtr0087641 2 1 1 138 2R 9744167 9744185 GATGAAGGCACTTCTTGAG 58 9743992 9744065 GAAGGGAGTTGCATATAGC 57 NA Drosophila melanogaster 50 fl(2)d FBgn0000662 FBtr0087647 3 1 2 137 2R 9709046 9711300 GAAGATGAGATCGAGAATCTC 57 9708866 9708947 AATTTGGCTCACATAGTCC 57 NA DesignRelaxed Drosophila melanogaster 50 CG18369 FBgn0033860 FBtr0087624 3 1 1 60 2R 9484407 9484426 CAATCTGTTTGGAACACCAC 59 9484449 9484467 CCAGATTTGAGAATCCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4663 FBgn0033812 FBtr0087761 1 1 1 253 2R 9116539 9116557 CTTGATCATGAAGCTGCTG 58 9116168 9116186 TAATTGGAATGATGCCGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG12374 FBgn0033774 FBtr0087854 3 1 1 164 2R 8650765 8650783 CTACGGACAGTATGTCCTC 58 8650908 8650988 GAAACGACATAGTTAAGCAGAC 59 NA Drosophila melanogaster 50 ox FBgn0011227 FBtr0087861 1 1 1 110 2R 8645003 8645022 TCAACCTAACAAATCAGCTG 58 8644912 8644930 AGGGTGTTGTAGATAACCT 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG8778 FBgn0033761 FBtr0087880 3 1 1 60 2R 8539188 8539209 GGTTAACCATGTAGTGAAACAG 59 8539149 8539168 TTTAAGTGCCTGCTGATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DebB FBgn0000426 FBtr0088010 3 1 1 191 2R 8071685 8071703 ATAAACAGAATGTCGGCTG 57 8071512 8071530 AAGATTACCAGTCACGGAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 inv FBgn0001269 FBtr0088070,FBtr0088067 2 2 4 107 2R 7394460 7394532 TATTTATGGAGTATCCGCCG 59 7394602 7394620 ACAATCATAGCTCTTCGGG 59 NA InUTR Drosophila melanogaster 50 alphaTry FBgn0003863 FBtr0088161 1 1 1 77 2R 7232250 7232268 TAACACCATGGTCAACGAC 59 7232191 7232211 CTAATAGCCTTGATGCTTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr47Ed FBgn0033601 FBtr0088188 2 1 1 60 2R 7148992 7149010 TTCGAAGACATCTGACGAC 59 7148950 7148968 CCAGTCGTTGATATAGCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13223 FBgn0033599 FBtr0088113 1 1 1 80 2R 7145171 7145246 GCCTACATAATAGTTCGAGGA 58 7145288 7145306 AGCCACAGGAATCATTAGG 59 NA Drosophila melanogaster 50 Or47a FBgn0026386 FBtr0088111 2 1 1 61 2R 7139095 7139184 CCTTCTCATCGATTGTTCG 58 7139208 7139227 TTAGGAGAATGATCTCAGCA 57 NA DesignRelaxed Drosophila melanogaster 50 skf FBgn0050021 FBtr0114569,FBtr0114570,FBtr0088196 2 3 3 105 2R 7117513 7117534 CTTGTAAAGGATAAGCAAGGAC 59 7117366 7117447 ATCAGCTTGGAAAGAGCAG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Syx6 FBgn0037084 FBtr0088104,FBtr0088103 3 2 3 129 2R 7108119 7108443 CACTATCAGCATCGTTGAG 57 7108535 7108554 GTTCAGGCTCATCTTATCCT 58 NA InUTR Drosophila melanogaster 50 Syx6 FBgn0037084 FBtr0088104,FBtr0088103,FBtr0088102 3 3 3 79 2R 7109104 7109122 AAAGTTGCCAAAGTCTTGC 59 7109317 7109337 AACAATAACAGTCCGGATAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12896 FBgn0033521 FBtr0088315 2 1 1 104 2R 6314732 6314813 CAACGTTGACGAGATTCTG 58 6314583 6314601 ATCATGACCTTAGTGCCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG33475 FBgn0053475 FBtr0088318 3 1 1 60 2R 6298482 6298501 TATCCAAGGTTTACTCGGTG 59 6298441 6298462 CATCTAAATACCGTGGAATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ndg FBgn0026403 FBtr0088349 2 1 2 174 2R 6206484 6206502 AGAAAGGAATGCCGATCTG 59 6206703 6206781 ATCGGGTCTAATTGCACAG 59 NA Drosophila melanogaster 50 CG33758 FBgn0053758 FBtr0091759 1 1 1 82 2R 5341166 5341185 ACCTAAGGCCATATCTTGTC 58 5341052 5341071 CTCGAAGTCTTTACATTCCA 57 NA DesignNoJunction Drosophila melanogaster 50 CG8213 FBgn0033359 FBtr0088670 2 1 1 124 2R 4858213 4858231 GTGACCAAGAATGTCAAGC 59 4858039 4858126 CAAATGGGCACTATATGGGT 59 NA Drosophila melanogaster 50 Ggamma1 FBgn0004921 FBtr0088645,FBtr0088647,FBtr0088648,FBtr0088649,FBtr0088646 3 5 5 101 2R 4789860 4789879 TAATGTCATCATCCCTGCAG 59 4789943 4789961 TCATCTTAGCGCATGACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LvpD FBgn0002569 FBtr0088747 1 1 1 72 2R 4342798 4342816 AACCTACGAGTATGTGCTG 59 4342911 4342929 TCTCTGTGACAGATCTGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG14757 FBgn0033274 FBtr0088805 3 1 1 151 2R 4060758 4060776 TTTCAACGACGTGATTGTG 58 4060224 4060242 TCAGCAGAAGATCGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Or43b FBgn0026393 FBtr0088887 3 1 1 70 2R 3808550 3808632 CACTAACATCAATGTAGCCA 57 3808499 3808517 TTTGGTCCAGGTTCATACC 59 NA DesignRelaxed Drosophila melanogaster 50 CG12159 FBgn0033232 FBtr0088888,FBtr0088889 2 2 2 60 2R 3803454 3803472 CTGTTGTCTACATCCTCGT 58 3803412 3803431 ACCCTCATAATAAGCAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30502 FBgn0050502 FBtr0089001 3 1 1 128 2R 3334678 3336933 ATAGTATGGAGCACCTAGTG 57 3334569 3334587 AGTACCAAGGGTCAAAGAG 58 NA Drosophila melanogaster 50 sPLA2 FBgn0033170 FBtr0088973 2 1 3 65 2R 3330818 3330836 CGAGATTATCGAGTCCCAC 59 3330865 3330883 TACATGGGAAACCAGTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012 3 7 7 84 2R 3287432 3287450 GATCTACGACAAGGAGACG 59 3287308 3287384 GGTGACTTCATTCCTGGTC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111068 3 1 60 99 2R 3245024 3249236 ATTGGTCATCACAGAACCC 59 3244943 3244962 TATAGCTAGACTGCGATCCT 59 NA Drosophila melanogaster 50 Spn43Aa FBgn0024294 FBtr0089041 3 1 1 110 2R 3036098 3036116 TTCAATCTGCTCGAAGACC 59 3036187 3036388 GATTCCCATCTTATGCAATGTG 59 NA DesignRelaxed Drosophila melanogaster 50 Tsp42Ep FBgn0033137 FBtr0089062 1 1 1 112 2R 2944403 2944421 CCAGCAGATCTATCCAAGC 59 2944242 2944328 GTATGAAGATCTCAAGGCCA 59 NA Drosophila melanogaster 50 CG9460 FBgn0033115 FBtr0086164 1 1 1 105 2R 2774861 2774881 ATAAGCTCCCAATTGAGAAGG 59 2774948 2775372 TCTTAATGCCCAACTCCTC 58 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086205,FBtr0086204,FBtr0086197,FBtr0086201,FBtr0086196,FBtr0086198,FBtr0086202,FBtr0086199,FBtr0086200,FBtr0086203 1 10 11 67 2R 2764942 2764960 AAGTGGAATTGTCTGAGGT 58 2764829 2764847 AAATTCAGCCTGATCGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Fmo-2 FBgn0033079 FBtr0086148 2 1 1 88 2R 2532058 2532077 GGAACACTTCAAGCTAAAGG 58 2531879 2532007 ATACGTAGACCTCCCAGTC 59 NA Drosophila melanogaster 50 Cyp6w1 FBgn0033065 FBtr0085987 3 1 1 60 2R 2062211 2062230 GACTTGGACTACTTAGTTGC 57 2062253 2062271 CACTAGTTTCAAATCCGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40282 FBgn0039979 FBtr0111272 1 1 1 90 2R 618558 618578 GGAAATCAAGGAGGATTAGGA 58 618488 618506 GACCACTTCCCTGAATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17683 FBgn0040002 FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300 3 4 5 80 2R 19474 19549 AATCACTTCAGTTGAGGTG 57 19591 19611 CAGTCTAAATCAAGGAGATCG 57 NA Drosophila melanogaster 50 Cht3 FBgn0022701 FBtr0111127 1 1 1 82 2L 22896775 22896794 TTAATCGTGTACTCAGAGGT 57 22896655 22896730 GATGTTTGGCTTCATTGTG 57 NA Drosophila melanogaster 50 CG40439 FBgn0058439 FBtr0111233,FBtr0111232 1 2 2 60 2L 22690659 22690677 ATTAACCCTGAAATGAGCC 57 22690617 22690635 TTAACTCAGAATAGCGTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His4:CG33887 FBgn0053887 FBtr0091891 1 1 1 60 2L 21489381 21489399 GAACGTAATTCGTGATGCC 59 21489339 21489357 GGCTGTAACTGTCTTCCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 crc FBgn0000370 FBtr0100139,FBtr0081512 3 2 3 89 2L 21312033 21312106 CTTTGCAAATGGCATTACTC 57 21312158 21312176 ATCTCCTCATCACTAAGCA 57 NA Drosophila melanogaster 50 CG31626 FBgn0051626 FBtr0081485 3 1 2 84 2L 21236687 21236706 CCCACATTCTTCAAGAAGTG 58 21233881 21233899 GTGATCATTAACCCAGAGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081442,FBtr0081441,FBtr0081444,FBtr0081447 2 4 8 102 2L 20876930 20876948 CATCCAAATGATGTCCCAC 58 20874424 20875092 CGTGAACAGAAATTGTCTATCC 59 NA Drosophila melanogaster 50 CheB38a FBgn0067312 FBtr0081453 3 1 1 88 2L 20818105 20818126 CTATCCTGGTACAAGTATTGGT 59 20817982 20818056 ACAAGGACAGTACCTTTGG 59 NA Drosophila melanogaster 50 CG40169 FBgn0058169 FBtr0100179 2 1 2 211 2L 20238606 20238626 CGCCTTTAAGTCTTCTTTGTC 59 20245416 20245434 GTACCAATTGTGCAGTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 pr FBgn0003141 FBtr0089396,FBtr0089395 3 2 2 87 2L 20074323 20074778 CTATACAGTTGAGATAACCGTC 57 20074257 20074276 TTCTATAGCCTCTTTCAGCT 57 NA Drosophila melanogaster 50 CG10462 FBgn0032815 FBtr0100351,FBtr0100352,FBtr0081325 1 3 3 90 2L 19733222 19733240 GACAAACGTTTCCGAACTC 59 19733057 19733169 CTAACGAGCATATCTTGCAC 58 NA Drosophila melanogaster 50 CG10263 FBgn0032812 FBtr0081265 1 1 3 214 2L 19581472 19581490 ATCAATCACAGACATGTGG 57 19581170 19581191 GGTATACTACCAATACTACCGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG5674 FBgn0032656 FBtr0081023,FBtr0081021,FBtr0081022 3 3 3 75 2L 17969402 17969420 AAGTTCATCATGAGGGAGC 59 17969459 17969477 GTTCCATCTGCCTGTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CadN FBgn0015609 FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017 3 6 12 102 2L 17651479 17652674 TCTGATACTACTCGTCTTGGT 59 17651397 17651415 GTTGATGATATTCTCGCGC 59 NA Drosophila melanogaster 50 fws FBgn0024689 FBtr0081000,FBtr0080999 1 2 2 101 2L 17479200 17479218 AGAGGATGTCTACCACAGG 59 17479059 17479077 TCTGCTTGTCATCGAACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15134 FBgn0032621 FBtr0080949,FBtr0114502 1 2 2 80 2L 16904393 16904471 CTAAGACAGGGAATCATTGTG 58 16904511 16904531 CTTGTACTGATGCTCAAACAG 59 NA Drosophila melanogaster 50 CG13283 FBgn0032613 FBtr0080928 2 1 1 60 2L 16835818 16835837 GTTTCGTATCGCCTTATGTG 59 16835777 16835795 TGCCTCAAGAAATATGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mdy FBgn0004797 FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917 3 4 4 88 2L 16820784 16820802 ACATAACGCCCTAATCCTG 59 16820919 16825419 CAATTATTTCCATGGCTAGACC 59 NA Drosophila melanogaster 50 CG13272 FBgn0086673 FBtr0080914 1 1 1 208 2L 16811804 16811822 AGACTTTGGAGACGATTGG 59 16813594 16813612 ATTACTTTGACCAGTGCTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG31782 FBgn0051782 FBtr0080938 1 1 2 80 2L 16702251 16728201 CGAATATGGATCCTCGTATACC 59 16702192 16702211 CACATTGGGAACAATTGTGG 59 NA Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876 3 7 7 169 2L 16472183 16472201 GAATATTCAGAGCCTGCTC 57 16469244 16471862 TCTGGTAAAGCACTCTCAG 58 NA Drosophila melanogaster 50 cni FBgn0000339 FBtr0080849,FBtr0080848 1 2 2 98 2L 16309918 16310008 CATATACGGCATGGTTTATTCG 59 16309841 16309859 ACAACTAATACACGACGCT 59 NA InUTR Drosophila melanogaster 50 CG11865 FBgn0028947 FBtr0080753 1 1 1 60 2L 15617537 15617556 CAGCGGGATAAATATGTGAG 58 15617579 15617597 AGTTATGTTCATGACCGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mol FBgn0086711 FBtr0080676,FBtr0111014,FBtr0111015 3 3 5 99 2L 14992319 14992337 TTTAGTCATCTTTCCGGGT 58 14984074 14984205 CAGGCGAGTGATTAATATGAC 58 NA Drosophila melanogaster 50 mol FBgn0086711 FBtr0080676,FBtr0111014,FBtr0111015 2 3 5 98 2L 14992318 14992336 TTAGTCATCTTTCCGGGTG 58 14984074 14984205 CAGGCGAGTGATTAATATGAC 58 NA Drosophila melanogaster 50 CG31769 FBgn0051769 FBtr0080602 3 1 1 60 2L 14110413 14110431 TGAGGTGATTAGGGAAACC 58 14110371 14110390 CGTTCTCCTTATGAGTTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sec71 FBgn0028538 FBtr0080537,FBtr0080538 2 2 2 96 2L 13798752 13798770 TTTCTTCAAGATGTACGGC 57 13799016 13799034 GTAGTAGTTGGAAACGTGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG31729 FBgn0051729 FBtr0080462,FBtr0080461 2 2 2 80 2L 13298388 13298407 GTGATGAATAACTCACAGCC 58 13298450 13298570 GCAGAACAGAACCTTAGTC 57 NA Drosophila melanogaster 50 CG31858 FBgn0051858 FBtr0080381 1 1 1 60 2L 12497154 12497175 CTGACTGTTTCGAAATTACTGG 59 12497115 12497133 GATTCAATTTGATTGGCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-thr FBgn0027081 FBtr0080333,FBtr0080332,FBtr0080331 2 3 3 63 2L 12104541 12104694 ATACTCGCAAGGAACTCAG 59 12104721 12104739 TTCTCCCAGAAGACATTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Mt2 FBgn0028707 FBtr0080329,FBtr0110911 3 2 2 60 2L 12097162 12097181 AAAGATCTGGGAAGAAATGC 58 12097204 12097222 GGCAATTTGTGAAAGACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14946 FBgn0032405 FBtr0100290 2 1 1 165 2L 12063862 12063938 CAGGGATCTGATTCGAACC 59 12063715 12063733 GATGGTTACCTCCATGAGG 59 NA Drosophila melanogaster 50 CG5381 FBgn0032218 FBtr0080060 1 1 1 80 2L 10319557 10319634 CGCGATCTAAACGATAATTCC 59 10319497 10319517 CCTATCAATATCTTGCAGGGA 59 NA Drosophila melanogaster 50 CG5390 FBgn0032213 FBtr0080064 2 1 1 80 2L 10304766 10304841 CCAGTAGCATTGTTGTGAG 58 10304704 10304722 TGACATATCGGTCTTCGTG 59 NA Drosophila melanogaster 50 CG5640 FBgn0032207 FBtr0080077,FBtr0080075,FBtr0080076 2 3 3 80 2L 10275748 10275766 ATGCTTTCCTAGCATATCG 57 10275619 10275705 GATATAAGACGCCGATTGAG 58 NA Drosophila melanogaster 50 CG5899 FBgn0032157 FBtr0100280,FBtr0079901,FBtr0100279 1 3 3 91 2L 9910428 9910502 CGTTGTTTGCTAAGAAGGG 59 9910355 9910373 CATGATACGCTTTGCTCTC 58 NA Drosophila melanogaster 50 Hnf4 FBgn0004914 FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846 3 4 4 101 2L 8688854 8688935 TCTTCTTCGATCCCAATGC 59 8688771 8688790 GCCGATCTGATATGTAGTCC 59 NA Drosophila melanogaster 50 CG14273 FBgn0032024 FBtr0079605 2 1 1 137 2L 8343713 8343731 AAGTTGTAAGCGAAGAGGA 58 8343832 8344080 ATTCGTTAAGTTGGAGCCT 58 NA Drosophila melanogaster 50 CG31606 FBgn0051606 FBtr0079578,FBtr0079577 1 2 2 60 2L 8147879 8147898 TCGAATATGCAGAGTACAGG 58 8147921 8147939 ACTATGGTCTTTCCATGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL36A FBgn0031980 FBtr0079546 1 1 1 151 2L 8042125 8042457 CCCATCTTCAGGAAGAAGG 59 8041992 8042010 AACTGGATCATCTGTCCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG13796 FBgn0031939 FBtr0114496,FBtr0079504,FBtr0079503,FBtr0079505 2 4 4 81 2L 7728559 7728579 GTGTGCCTTACTCATATTACC 58 7728434 7728516 CAACGTGATCCTCAAAGTG 58 NA Drosophila melanogaster 50 santa-maria FBgn0025697 FBtr0079464,FBtr0079465 3 2 2 155 2L 7446348 7446429 ATCTGTAGATAATGGCACCC 58 7446212 7446230 TCTGGGTAGTAAGGATCGG 59 NA Drosophila melanogaster 50 CG5171 FBgn0031907 FBtr0079440,FBtr0079439,FBtr0114588 3 3 3 123 2L 7404096 7404115 ATAATTGGTCGCAGAAAGTG 58 7404267 7404285 GTTTGAATCTGGGCATCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Mnn1 FBgn0031885 FBtr0110978,FBtr0079401 3 2 3 84 2L 7059186 7060972 CACAAAGGAGGAGAAATCCA 59 7061019 7061037 ATTGAGAATCTTCTCGCCA 58 NA Drosophila melanogaster 50 CG10354 FBgn0031868 FBtr0079345 3 1 1 60 2L 6908261 6908279 TCGAAACATCTACGAGGAC 58 6908301 6908321 CAGATTGTCAAACTCTATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp FBgn0031850 FBtr0079313,FBtr0079311,FBtr0114488,FBtr0079312,FBtr0079314 3 5 6 105 2L 6701761 6701779 TGGATGTTGCATCACTCTC 59 6700488 6700562 CGACGAGGTCTAATGTGTC 59 NA Drosophila melanogaster 50 CG9526 FBgn0031815 FBtr0079258,FBtr0079259 3 2 2 86 2L 6457036 6457054 ACTACGATGTGGAATTGCA 59 6457102 6457346 AATAGGGACCTGTAAGAACTC 58 NA Drosophila melanogaster 50 CG13983 FBgn0031792 FBtr0079285 1 1 1 60 2L 6264177 6264196 GAATCAGGAATCGGATAGAC 57 6264136 6264154 GTAGTACGGGTAGTAGGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34180 FBgn0085209 FBtr0112373 2 1 1 65 2L 6060733 6060751 TAAGCATATGCAGCTTTCC 57 6060780 6060798 TAATCACGGCCTGTATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lid FBgn0031759 FBtr0079231,FBtr0079232 3 2 2 83 2L 5993340 5993484 GGGTATCAATAAGGTGCGA 59 5993275 5993293 AACAACTCTAGCTCCTCCA 59 NA Drosophila melanogaster 50 Hsp60C FBgn0031728 FBtr0079111,FBtr0079112,FBtr0079110 2 3 3 60 2L 5668985 5669003 CGTACTGCAAAGATCAGTC 58 5669027 5669045 CGAACCTAACATCCTTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31646 FBgn0051646 FBtr0079114 3 1 1 98 2L 5641946 5645468 ATTCCCGAGAAAGATCTTCC 59 5641867 5641885 CAAATTGTCGACTACGCAC 59 NA Drosophila melanogaster 50 Sgs1 FBgn0003372 FBtr0077393 1 1 1 60 2L 4937563 4937583 GTGAAAGCTAATTACGACTGG 59 4937604 4937623 CGGGTATTATCTCCTCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hoe1 FBgn0041150 FBtr0077395,FBtr0077398,FBtr0077397,FBtr0077399,FBtr0077400,FBtr0077396 1 6 6 105 2L 4909614 4909686 ATTCTATGGGTTTCCGCTG 59 4909527 4909546 GATTCAAGGTGCTATTCTGC 58 NA Drosophila melanogaster 50 CG3355 FBgn0031619 FBtr0077376 2 1 2 185 2L 4652028 4652046 CCTAACTACGATCCCAACC 59 4652461 4652479 CAGATAGTTGGAGGTGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15429 FBgn0031596 FBtr0077428 1 1 1 76 2L 4353597 4353615 GCGAAAGTTCTCAAATGGG 59 4353718 4353736 CAGTCAGTCCATTCTCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Atet FBgn0020762 FBtr0077427,FBtr0112899,FBtr0112898,FBtr0077426 1 4 4 80 2L 4343788 4343808 GCATCTCAACTACTGGTACTC 59 4343848 4343930 GAGAAGACAATCTGAAATGGC 59 NA Drosophila melanogaster 50 tutl FBgn0010473 FBtr0089269,FBtr0089270,FBtr0089268,FBtr0089271 2 4 4 174 2L 4295611 4299075 CAATATTCCAGAAGACGCC 58 4303359 4303377 CGGATAGCTCTCATACCAG 58 NA Drosophila melanogaster 50 tim FBgn0014396 FBtr0114526,FBtr0077564,FBtr0077567,FBtr0114527,FBtr0077566 1 5 8 80 2L 3500053 3500071 CAGAATTCCGGACTACTGG 59 3499754 3500009 TTGAGGTTGAGTTTGTCCA 58 NA Drosophila melanogaster 50 msl-2 FBgn0005616 FBtr0077570 1 1 2 80 2L 3463757 3463776 CCGCTAAATAATTTGCAGCA 59 3463644 3463716 GATATTGAAGCCCTGGTACTC 59 NA Drosophila melanogaster 50 CG15406 FBgn0031517 FBtr0077580 2 1 1 109 2L 3310197 3310634 GACAATAGCATTCGAGGTC 57 3310707 3310725 CAGGGTATCACGTGATAGG 58 NA Drosophila melanogaster 50 robl22E FBgn0028570 FBtr0077800 2 1 1 84 2L 2290567 2290585 AGTCCATGAAGAACGTCAC 59 2290501 2290519 AGTGTCAGAGTGTAGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17012 FBgn0031406 FBtr0077804 2 1 1 60 2L 2254315 2254333 TAACTGGATCCTTAGTGCC 58 2254273 2254291 TTACACATTTGTAGCGGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aop FBgn0000097 FBtr0077851,FBtr0077850 2 2 2 126 2L 2159242 2159326 CTGAGCCCAATACAAATGG 58 2159134 2159152 TCGACGATCTTGAAGACTC 58 NA Drosophila melanogaster 50 CG11911 FBgn0031249 FBtr0078098 3 1 1 60 2L 320443 320461 CCATTTACACCAAGGTGTC 58 320401 320422 TAGTAGGCACTCTGAATATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Plc21C FBgn0004611 FBtr0078047,FBtr0078048,FBtr0078051,FBtr0078050 2 4 5 137 2L 344368 344386 CGAAAGAAGCATGACAAGG 59 344484 344570 CGGAGAAAGACAATTAAGACTC 58 NA Drosophila melanogaster 50 Nhe1 FBgn0026787 FBtr0078161 2 1 1 95 2L 105329 105401 ACCTATCCACTGTTACCCA 59 105252 105271 TTGCTAATCCCAGATAAGCA 58 NA Drosophila melanogaster 50 CG31973 FBgn0051973 FBtr0113415,FBtr0078163,FBtr0078164 1 3 4 91 2L 28236 28747 GAAGAGATATTCCTGGCGAG 59 28164 28185 CTGCTTGTTTAGGTCATTAACG 59 NA Drosophila melanogaster 50 l(2)gl FBgn0002121 FBtr0078166,FBtr0078171,FBtr0078170,FBtr0078167,FBtr0078168,FBtr0078169 1 6 6 80 2L 14976 14996 ATTATGTGCCTTATGGACCTG 59 14858 14937 CAATTACATCGTTGGATCTTCG 59 NA Drosophila melanogaster 50 CG15459 FBgn0031108 FBtr0077329 2 1 1 190 X 20284592 20284610 GGAGCTATAGGCAGAACAC 59 20284251 20284269 GTACACGATGAACAACAGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Or19b FBgn0062565 FBtr0070003 3 1 1 80 X 19989617 19989635 GCCAGATTCCAATGATCCT 59 19989679 19989750 ACGCTCCCTTAATCATCAC 59 NA Nonspecific Drosophila melanogaster 50 CG15042 FBgn0030937 FBtr0074619 1 1 1 60 X 18421127 18421148 TTACATAAACATCCTAGAGGGC 59 18421088 18421107 GATATCGCTTCGTAGTACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33252 FBgn0053252 FBtr0074346 3 1 1 140 X 16790637 16790731 CATGGTATTTATCAAGCCGC 59 16790516 16790534 TCCGAAAGGATCATCTTGC 59 NA Drosophila melanogaster 50 CG9125 FBgn0030793 FBtr0074352 3 1 1 289 X 16696485 16696591 GTTGACTTCAAAGATTGCAG 57 16696215 16696234 TTAAGATTGCGCAGAAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CanA-14F FBgn0030758 FBtr0074292,FBtr0074293 3 2 2 67 X 16461493 16461511 ACCAAGTATCTGTTCCTGG 58 16461444 16461462 AAATACAGTACGCACTCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TH1 FBgn0010416 FBtr0074305 3 1 1 193 X 16283900 16283987 TTGCATCAAATATCCTGTGG 58 16283726 16283744 GCTTGGACTCAAATAAGCG 59 NA Drosophila melanogaster 50 nonA FBgn0004227 FBtr0074232 3 1 3 76 X 16259644 16259662 TGATTGGAAACAATGCTGC 59 16260960 16260981 GCCTTGGTTCATATTGTTAACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13957 FBgn0030739 FBtr0074224 1 1 1 80 X 16210368 16210454 ATAATTGACCAGGGCATAGAC 59 16210495 16210514 GTTCATGTTGTAGGCATACG 58 NA Drosophila melanogaster 50 Ac13E FBgn0022710 FBtr0074073,FBtr0100142 2 2 2 109 X 15411715 15413955 GATACAGGTTCACCCTCTC 58 15411624 15411642 AAAGGAGCTAGAGATTGGG 58 NA DesignNoJunction Drosophila melanogaster 50 l(1)G0168 FBgn0027287 FBtr0074042,FBtr0074043 1 2 2 83 X 15401624 15403766 AAGTGGAGAGCCTAAAGGA 59 15403813 15403831 TGTCAATCTTGTCCGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5662 FBgn0030620 FBtr0073999 3 1 1 63 X 15104879 15104897 GTGGAGAATGTCTTCACCC 59 15104921 15104942 GTTGATAGTTTACCTCATCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32602 FBgn0052602 FBtr0073911 3 1 1 79 X 14175320 14175339 TACAACTCTGAAGCCAACTG 59 14175381 14175619 CCGTAGTTCCACTAGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33174 FBgn0053174 FBtr0073826,FBtr0073825 2 2 2 81 X 13698016 13698034 GTCTCAATCAAATGGAGGC 58 13698079 13698169 GAAATGGTCTTCCACTTGG 58 NA Drosophila melanogaster 50 CG1764 FBgn0030467 FBtr0073796 3 1 1 90 X 13189128 13189207 TTCCAGAAGCCTACAAGAC 58 13189056 13189074 AGACCACTGGAATATTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 hep FBgn0010303 FBtr0073749,FBtr0073747 3 2 3 239 X 12975691 12975709 GTCTAGATCACCGGAACAG 59 12975076 12975094 GCTGTGGAATTCAATTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 m FBgn0002577 FBtr0073555 1 1 1 80 X 11661068 11661088 CCTGTTAGTGGAATTGTACCA 59 11661130 11661216 CATATCGAATTCGCCTCGA 59 NA Drosophila melanogaster 50 CG2533 FBgn0030319 FBtr0073537 1 1 1 60 X 11497543 11497561 GTCATTCAACTGGAAGAGC 58 11497501 11497519 CCTTCTGATCCGTTAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr10a FBgn0045502 FBtr0073549 1 1 1 98 X 11307683 11308544 GACCAGGGAGATAGAACAC 58 11307603 11307621 ATCAGGTACACCAATCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15250 FBgn0030165 FBtr0071428 3 1 1 80 X 9861076 9861096 GGTCACCAATATCTCAAAGTC 58 9860856 9860874 TTAAAGAAGAGCACGAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ser7 FBgn0019929 FBtr0071387 2 1 1 196 X 9759423 9759503 ATTTGGCAAAGCTATCATGC 59 9760024 9760044 CCAATGGCGGTATAATATTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG16892 FBgn0030122 FBtr0071319 3 1 1 146 X 9168710 9168964 GAGTCTGCTATCCTCTTCG 58 9169073 9169092 GTGACTACCAGATAATTGCC 58 NA Drosophila melanogaster 50 Tom40 FBgn0016041 FBtr0071074,FBtr0071073 2 2 2 126 X 7632816 7632935 GAATCTGGTCTTCAGAGGC 59 7633025 7633043 AAAGTTGTTCTTCACGTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9650 FBgn0029939 FBtr0071044,FBtr0112958,FBtr0071043,FBtr0071045,FBtr0112959,FBtr0112957 3 6 6 64 X 7133121 7133139 AGAACTGCAACATGTTCCA 59 7133167 7133185 ATTGAAGAGCGGTACTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0148 FBgn0028360 FBtr0070950 1 1 1 90 X 6549438 6549456 GAATTCAATGGAGCTGCAG 59 6549509 6549597 GATCATTGATGGCTTCTTCG 59 NA Nonspecific Drosophila melanogaster 50 Lag1 FBgn0040918 FBtr0070937 1 1 2 80 X 6160490 6160509 ACTACAAGGACCTCATATGG 58 6153747 6160447 ATATCCAGAAACGCTCCAG 59 NA Drosophila melanogaster 50 CG5921 FBgn0029835 FBtr0070870 1 1 2 155 X 5956030 5956048 TTATGGACGAATTCAAGCG 58 5956167 5956812 CAATTGAAGTGCTTGACCT 58 NA Nonspecific Drosophila melanogaster 50 CG12236 FBgn0029822 FBtr0070825,FBtr0070826 1 2 2 61 X 5803828 5803846 ATGGAGGAGAAGTACCAGG 59 5803871 5803951 AATCGGGTCATCTCAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15784 FBgn0029766 FBtr0070777 3 1 1 71 X 5326029 5326047 CTTTGGTCCACATCATGGT 59 5326082 5326100 GGAACGTCAAAGAATGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GlcAT-I FBgn0066114 FBtr0070644 1 1 1 62 X 4025520 4025603 CTAACCAGACTATCTCACCTC 58 4025627 4025645 GTCCTCCACAATGATCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33218 FBgn0053218 FBtr0070400 1 1 1 74 X 2224502 2224520 AACCTCAAATTCCGAAGGT 59 2224558 2224576 TTGTTAGCTTCGATGGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp4ae1 FBgn0015036 FBtr0070388 3 1 1 127 X 2074381 2074461 TTTGGTTATAGATGAGGGCT 58 2074551 2074569 CTTCTCCTAGATGCCTCTC 58 NA Drosophila melanogaster 50 CG34320 FBgn0085349 FBtr0112522 1 1 1 247 X 1057998 1058017 TTCATCAAGTTACTCCTCCT 57 1057666 1057685 TCAATGTTCATCATATCGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40930 FBgn0085538 FBtr0113951 3 1 1 60 U 7128800 7128818 AAGACCTCAAGGTTTGGAG 59 7128840 7128860 GCTACTTAACTTCCAATGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41562 FBgn0085693 FBtr0114142 1 1 1 106 U 5467316 5467334 TATCCAACATACCCAAGCA 58 5467404 5467495 ATGATGCTTACTTGACTGC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17878 FBgn0039947 FBtr0113763 1 1 1 60 U 2295848 2295868 CCACAAAGTTGGAAATACTCG 59 2295808 2295827 TGTTATGGTAAACTCGACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sphinx FBgn0083990 FBtr0111044 2 1 3 60 4 996136 996157 CCACTTTAAGATTCCTGTAGTG 58 996176 997399 TTTACACAAGATGGAGAAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bxd FBgn0020556 FBtr0083341 2 1 4 271 3R 12579511 12598585 GAACAACATAGCACTCACAC 59 12568373 12568391 ATTAAGCCATCAAGTCGCA 59 NA DesignNoJunction Drosophila melanogaster 50 sip3 FBgn0039875 FBtr0085842 1 1 1 95 3R 27598372 27598390 TACATCACCAAATCGAACG 57 27598511 27598584 CAGGAAGATCTTGCTTAGC 57 NA Drosophila melanogaster 50 hdc FBgn0010113 FBtr0085620,FBtr0085621,FBtr0085619 2 3 3 82 3R 26184088 26184106 ATTCGATCGCTATCCACTG 59 26184151 26185704 CGTATTTAACCTCGATGCAG 58 NA Drosophila melanogaster 50 CG7928 FBgn0039740 FBtr0085600 2 1 1 60 3R 25861845 25861864 TACCATGAGTGACTTTGACG 59 25861804 25861824 GCCATCGGATATTATGTACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15510 FBgn0039707 FBtr0085487 3 1 1 75 3R 25662918 25662936 AGACGGCAACTAGATTGTG 59 25662975 25663048 GTAACAATCCAAAGTGGCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG14508 FBgn0039651 FBtr0085406 2 1 1 60 3R 25028793 25028814 TGTACTTCAATCCGTACTTCTC 59 25028754 25028772 TCATTGTCAACTACCTTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11900 FBgn0039650 FBtr0085407 2 1 1 66 3R 25027716 25027734 CCTAAGGGATCTGCAAGTC 59 25027607 25027625 AACGAAGTACTGATCACGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG14065 FBgn0039579 FBtr0085280 2 1 1 151 3R 24160032 24160050 TGAAGAGCTTCAAGTCGTG 59 24159899 24159917 CAATTCCGATGAGTTCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spz FBgn0003495 FBtr0114372 2 1 12 106 3R 22892471 22892489 CAGTATCACAGCCTGATCC 59 22892166 22892339 CGATACTTGGTATCCGATGG 59 NA Drosophila melanogaster 50 CG6403 FBgn0039453 FBtr0085044 1 1 1 70 3R 22561679 22561697 GTTCTACTTCTGCCTGGAC 59 22561627 22561648 CGTTGTTCACGAAATAGTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5484 FBgn0039450 FBtr0085037,FBtr0085039,FBtr0085038 3 3 3 107 3R 22544579 22544653 TATGCATAAGGATTGGTCCC 59 22544723 22544741 TATGTGATGTAGCCCATGG 58 NA Drosophila melanogaster 50 CG14237 FBgn0039428 FBtr0085013 2 1 1 77 3R 22282018 22282555 CAAATACGGAGTCGACCTC 59 22282596 22282614 GTTGTCCTGTCTTCATGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5768 FBgn0039198 FBtr0110867,FBtr0084620 1 2 2 112 3R 20212173 20212191 TATAATGGACGTGACTGCA 58 20212017 20212097 TTTGGCAAGCTGAATATGG 58 NA Drosophila melanogaster 50 CHORD FBgn0029503 FBtr0084554 3 1 1 127 3R 20013024 20013044 AATACGATTACAGTCAGAGCG 59 20013133 20013209 GCTCACATTCACAATTCCG 59 NA Drosophila melanogaster 50 CHORD FBgn0029503 FBtr0084554 1 1 1 125 3R 20012858 20012945 AAATGGGTCAAGGAGAACG 59 20013034 20013052 CTCTATCACGCTCTGACTG 59 NA Drosophila melanogaster 50 CG13607 FBgn0039151 FBtr0084585 3 1 1 81 3R 19940699 19940717 ATCACCACTATGTGACCTG 58 19940636 19940654 TTGGTATGATGCTCAACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13604 FBgn0039137 FBtr0084509 3 1 4 104 3R 19817570 19817589 GATACCTATGAGCAGTTGGA 58 19816967 19817503 GAGTGAGATGGATCGACTG 59 NA Drosophila melanogaster 50 CG12499 FBgn0038968 FBtr0084295 2 1 1 100 3R 18271800 18271871 CTTCATAACAGAACTGCGAC 58 18271719 18271737 CTAACTCCAAGGGCTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pinta FBgn0038966 FBtr0084297 3 1 1 124 3R 18249665 18249683 AAGCTCATCAAGAGATCCG 59 18249502 18249580 GGCGTCATGAATATTCTAAAGG 59 NA Drosophila melanogaster 50 CG13850 FBgn0038961 FBtr0084231 3 1 1 99 3R 18234855 18234873 AAATGGAATGCTAGATGCC 57 18234721 18234792 GCACAGTGCATCTATAAGG 57 NA Drosophila melanogaster 50 lbe FBgn0011278 FBtr0084091 3 1 1 114 3R 17268106 17270809 AAGATAAATCCCACTTGGAC 57 17268011 17268030 TAGAGAAATCGCTTCTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3337 FBgn0038871 FBtr0084107 3 1 1 60 3R 17048671 17048690 GCACAACACCAAGATTATCG 59 17048630 17048648 AATCTTCACGTGCTCTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17282 FBgn0038857 FBtr0084033 1 1 1 60 3R 16944384 16944402 TACGGTGGAATTCAGTGTC 59 16944342 16944361 ATATTTGCTAGGTCGTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5697 FBgn0038846 FBtr0084001 2 1 1 161 3R 16842141 16842233 AACTGCTGACTATTCCTACG 59 16842357 16842375 CAGACACTGTCGGAATAGG 59 NA Drosophila melanogaster 50 Nep4 FBgn0038818 FBtr0083936,FBtr0083937 2 2 2 140 3R 16479556 16479574 TACATAAGTGGTGGACGGA 59 16479272 16479452 CTGCGATATTCTCACCCTG 59 NA Drosophila melanogaster 50 Stat92E FBgn0016917 FBtr0089484,FBtr0089486,FBtr0089485,FBtr0089487,FBtr0100457 1 5 5 80 3R 16366166 16366254 ATAATGTCAGAGATCCAGTCG 59 16366106 16366124 CGATGATTGACCGGATAGG 59 NA Drosophila melanogaster 50 CG10881 FBgn0038796 FBtr0083885 2 1 1 66 3R 16234657 16234675 CATGACCGAGACTGATCTC 59 16234705 16234723 CGCCAAATACATCTTGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5060 FBgn0038780 FBtr0113251,FBtr0083871 3 2 2 201 3R 16116118 16116136 TTCAAGAAGGGAGACATCG 58 16116301 16116697 TTGATCGACTGTCACTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG11626 FBgn0038705 FBtr0113247 3 1 1 142 3R 15235692 15235769 AGTTATAGTGCTTCTATACCGC 59 15235872 15235890 GATGAGTAGCCAAAGTCCT 58 NA Drosophila melanogaster 50 CG5316 FBgn0038704 FBtr0083758 3 1 3 177 3R 15229535 15229623 CATCTTTCACTTGAACCGG 58 15229764 15229782 GCTTGTTGATACGAAGTCC 58 NA Drosophila melanogaster 50 CG12269 FBgn0038665 FBtr0083722 2 1 1 89 3R 14804290 14804383 ATCTCATCAAGAGCATGGC 59 14804219 14804237 AGTAGAAGTCCTCATCGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gwl FBgn0004461 FBtr0083674 1 1 1 90 3R 14575312 14575330 TTCTACGAGTTCATGACCG 59 14575381 14575472 GCCATTCGATGTTCTTATTCAG 59 NA Drosophila melanogaster 50 CG7714 FBgn0038645 FBtr0083686 3 1 1 128 3R 14551971 14552072 GAAAGCCGTGATCTTTGTG 59 14551861 14551880 AACTTGAATCCTGACTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7709 FBgn0038642 FBtr0083687 2 1 1 164 3R 14518346 14518364 GGTGGCTTTGTCTTTAGGT 59 14516620 14516638 GTTGATGAGCTTCGAATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31231 FBgn0051231 FBtr0083662 3 1 1 133 3R 14492680 14492698 ACTTGAACCTTCACAACCT 58 14492863 14492945 TTCCTCTAGTTGCTTGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7794 FBgn0038565 FBtr0083540 2 1 1 96 3R 13850105 13850189 TATCCTTCGCCTTCAATCTC 59 13850247 13850266 CAATAAACGATACATCGGCG 59 NA Drosophila melanogaster 50 CG7379 FBgn0038546 FBtr0083529 3 1 1 153 3R 13622781 13622799 GTTGGTGGCAATAATTCCG 59 13622585 13622665 CAAAGGAGATCTGATTGCAG 58 NA Drosophila melanogaster 50 beat-IIb FBgn0038494 FBtr0083411 3 1 1 191 3R 13064762 13065211 TGCAAGTTGTGGAATTTCC 58 13059233 13059251 CAACCGTTCGAATGTACTG 58 NA Drosophila melanogaster 50 CG9632 FBgn0038377 FBtr0083186 1 1 2 74 3R 11686256 11686274 AAGAAGCTCAAGAGAAGGC 59 11686312 11686498 GACCACCTCAATATCGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9269 FBgn0038161 FBtr0082794 2 1 1 62 3R 9442012 9442030 CCTACGGCAATCTGTATGG 59 9442055 9442074 AAGGACGACCATAATATCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6359 FBgn0038065 FBtr0082641 1 1 1 82 3R 8454633 8454651 TAAAGGAGTCCAGTGTCAG 58 8454697 8454952 CACCACAATCTTGCTATCC 58 NA Drosophila melanogaster 50 Dip-C FBgn0000455 FBtr0082597 2 1 1 60 3R 8238220 8238238 GACATAACCTGCACATTCC 58 8238178 8238197 TGTAGATGAACTTCTGGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14714 FBgn0037929 FBtr0082422,FBtr0113222 1 2 3 78 3R 7498790 7498808 CAGCCACGAGATTAATGGA 59 7498953 7498971 AGAACAGTGAACGGTTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082457 2 1 6 67 3R 7417027 7417239 GAAGCTAAAGATCCGAGAGG 59 7416979 7416997 AATACTCGTTGGCTACGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9399 FBgn0037715 FBtr0082109 3 1 2 90 3R 5399132 5399150 TGTACAACGGGATGATTGG 59 5398996 5399078 AATATCGTCTTGGGACCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG8121 FBgn0037680 FBtr0082017,FBtr0082019,FBtr0082018 1 3 3 101 3R 5161887 5161905 TATGCTCATTGTCTTTGCC 58 5161970 5162218 TTCCTCTCGTATTCCTTGC 59 NA Drosophila melanogaster 50 pyd FBgn0003177 FBtr0089785,FBtr0112823 3 2 8 143 3R 4668550 4690515 AATTCTTTGGTGATCGAACC 58 4668426 4668444 CATCGCTAACTGCTATCGA 59 NA Drosophila melanogaster 50 CG8145 FBgn0037617 FBtr0081911 1 1 1 81 3R 4550088 4550177 GTTGTAAGGAAGTATAGTTGCG 59 4550219 4550237 TATTGGAGATGAAGTGCGT 58 NA Drosophila melanogaster 50 CG31454 FBgn0051454 FBtr0081870 3 1 1 136 3R 4348748 4348820 AAGATGTCTTCATGTGGCT 58 4348917 4348938 GACTTCAACATCAGATACAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 Arf84F FBgn0004908 FBtr0081838 2 1 1 81 3R 4167320 4167340 CTAGTTCTCTGCAACAAACAG 59 4167377 4167459 TGATATCCTCTAGGTGTAGTATCTC 59 NA Drosophila melanogaster 50 CG31464 FBgn0051464 FBtr0081830 1 1 1 60 3R 4117647 4117665 CAAGTTGCCTCTTCTACCA 59 4117689 4117707 TCAATCTGCGTAAAGAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpA-70 FBgn0010173 FBtr0081867 2 1 1 183 3R 4088630 4088648 GATTACTTCCAGTGCAAGG 58 4088386 4088483 CGATGCTCATGTTGATCAG 58 NA Drosophila melanogaster 50 CG9667 FBgn0037550 FBtr0081815 3 1 1 268 3R 3951877 3951958 AAGGCAATGACAACTTTGG 58 3951566 3951585 CCACCCAATGAGGATATCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG10928 FBgn0040522 FBtr0081746 1 1 1 63 3R 3635486 3635504 ATTCGATTTAACTCGCTCG 57 3635531 3635549 GTAAATCCAACACGAACGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10068 FBgn0037473 FBtr0081611 3 1 1 60 3R 2953473 2953494 CTTTATAAAGTGGTTCCTGCAC 59 2953434 2953452 ATAGCAAATCCTCTGGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1943 FBgn0037468 FBtr0081637,FBtr0081636,FBtr0081635 1 3 3 63 3R 2902727 2902745 CAATATCTTCTCGGAGCCC 59 2902771 2902790 GTTCTGTTGGTTGTACTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10277 FBgn0037442 FBtr0113198,FBtr0081722,FBtr0081720,FBtr0081721 1 4 4 88 3R 2211842 2211860 AACAAGTACGACACCTGTG 59 2211912 2212067 GTGTGATAGGGATGTGAGC 59 NA Drosophila melanogaster 50 Gasp FBgn0026077 FBtr0112922 2 1 2 83 3R 1920000 1920018 GCACAGTGTTCAAGATTGG 59 1915402 1919953 CATAGTAATCCTCGCACCC 59 NA Drosophila melanogaster 50 CG9776 FBgn0027866 FBtr0078955 3 1 2 96 3R 153927 153945 CTTCAGACAGTGAGAAGCT 58 153730 153867 TACAGAGCATATTGTGCCG 59 NA Nonspecific Drosophila melanogaster 50 CG14451 FBgn0037183 FBtr0078538 1 1 1 60 3L 22714632 22714652 CAGAAGGATATAAGGGACACG 59 22714592 22714612 GATGGGTGTCAACATATTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AP-2 FBgn0023417 FBtr0078419,FBtr0078418 1 2 2 221 3L 21602979 21604253 GACATGTCACCCAATTGTC 58 21604438 21605100 TCATGCTCTTTATGAGCGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG12983 FBgn0037040 FBtr0114616 2 1 4 95 3L 20959293 20959312 ACCATAGAAAGGGTACAGAG 58 20958844 20959235 ATTACGGGTAGCCTTATCC 58 NA Drosophila melanogaster 50 CG5078 FBgn0037005 FBtr0078208 1 1 1 60 3L 20500293 20500312 TTGATAGGCAGTGTAAGTGG 59 20500332 20500353 AGATAGCTCCAATCATAAAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5910 FBgn0036993 FBtr0078195 2 1 1 81 3L 20439488 20439852 GAAATTTAACGGCTCAAGAGG 59 20439895 20439913 GCCTAGGCAATACTTTGGT 59 NA Drosophila melanogaster 50 Nca FBgn0013303 FBtr0074902 1 1 1 164 3L 19986372 19986393 GCCTCAGTAGGTAAATAATGCT 59 19989876 19989963 TTGAATCTCAGCGTCTGTG 59 NA InUTR Drosophila melanogaster 50 ash1 FBgn0005386 FBtr0074970 3 1 1 171 3L 19584794 19584814 GACTGAATTAGACGTAGGAGC 59 19584573 19584664 CTTAAGCATCTGTTTATTGGGC 59 NA Drosophila melanogaster 50 CG14085 FBgn0036859 FBtr0074992 3 1 1 81 3L 19266241 19266320 ATGAGCAGGCTAAAGATCTG 59 19266364 19266382 TTGTCATCCTCGTCAATGG 59 NA Drosophila melanogaster 50 Msi FBgn0043025 FBtr0110847,FBtr0110846 3 2 3 96 3L 17749107 17749128 CTGGAGTGAATTTATCTTCACC 58 17748904 17749052 CAGATCGTACATATTTGGCAG 58 NA Drosophila melanogaster 50 CG32158 FBgn0052158 FBtr0075402,FBtr0075406,FBtr0075407,FBtr0113426 1 4 7 103 3L 16501641 16501659 ATGTGAACGGTAGCATCAG 59 16501157 16501574 CAGGAAGGTATTGTAGGCC 59 NA Drosophila melanogaster 50 CG13058 FBgn0036610 FBtr0075372 2 1 1 65 3L 16322289 16322307 GGTGGAGAGGTTCTTTCAG 59 16322336 16322354 GTCTGTCCAGAGATGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33984 FBgn0053984 FBtr0100029 2 1 1 60 3L 15520355 15520374 TTAAGACCCATAGGAACCTC 58 15520314 15520334 ATGTAGTATTGACTGGCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5392 FBgn0036463 FBtr0075671 3 1 1 70 3L 15004342 15004360 TAGTGAGGCAATCGATAGC 58 15001088 15004309 TATCATATGATTCTCCGGGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG10191 FBgn0036354 FBtr0075863 3 1 1 88 3L 13381874 13381892 CAATGACCTTAGTATCCGC 57 13381804 13381822 AATGTTTACTGTCGAGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14110 FBgn0036352 FBtr0075844 2 1 1 106 3L 13377974 13378045 GTTGTTCTCACCATTCAAGC 59 13378114 13378132 AGCTCTTCATCTTTACGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33262 FBgn0053262 FBtr0075826 1 1 1 61 3L 13129446 13129464 ACACTCCAGATCTAAACGT 57 13129489 13129564 TAAACTGGTGCCTTGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17144 FBgn0036267 FBtr0076015 2 1 1 64 3L 12201017 12202407 CGTAATTCCAATAGTCTAGCTC 58 12200974 12200992 GGAATGTCCATTTGGACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11560 FBgn0036249 FBtr0075993 1 1 1 98 3L 12113597 12113615 GTGAGCAGTTCTATGAGGT 58 12113677 12113761 ATTTCAGAGTCTGCTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6024 FBgn0036202 FBtr0113164,FBtr0113165,FBtr0113166 3 3 3 91 3L 11752784 11752802 GCTAATCCTCATCGGACTC 59 11737115 11752729 GCGACTGCATGTAATAGTG 58 NA Drosophila melanogaster 50 CG6216 FBgn0036139 FBtr0076220,FBtr0076221 2 2 2 113 3L 11143173 11143247 AAATGTGTTGTGGCAAGAC 59 11143078 11143097 TTAATTTGGCCTTGTTGGAG 58 NA Drosophila melanogaster 50 CG33493 FBgn0053493 FBtr0089606 2 1 1 80 3L 10685990 10686008 AACACATGGAACACAATCG 58 10685928 10685948 GCATTGGTCTTATAGTCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13314 FBgn0035949 FBtr0076518 1 1 1 60 3L 8976054 8976072 TACAATGATCCCGTGATCG 59 8976096 8976114 TTTCCTTCTTCGTGAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6776 FBgn0035904 FBtr0076622 1 1 1 76 3L 8512064 8512612 GTAAACATTTGGCCAAAGG 57 8512652 8512670 GAACCTCATGGAGTACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32354 FBgn0052354 FBtr0076662 3 1 1 137 3L 8409963 8409982 AACATATACTCTTCGCTGTG 57 8409789 8409807 ATTGAAGTCCTTGCAAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG7066 FBgn0035869 FBtr0076707 3 1 1 95 3L 8298066 8298137 AAAGTGGTCTAGATGCGAC 59 8298196 8298214 AAGAAAGCTCCCTTCTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Ets65A FBgn0005658 FBtr0077054,FBtr0077055 1 2 2 93 3L 6105510 6107400 CACAATCGCAAGGTTACAG 59 6109057 6109076 GGTCCGAACATTTGATATGG 58 NA Drosophila melanogaster 50 Cralbp FBgn0035636 FBtr0077117 1 1 1 60 3L 5776874 5776894 TCAGTTCCAAGATGAAGAACC 59 5776834 5776853 CTCTTCATCAGCTCCTTCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubp64E FBgn0016756 FBtr0077096,FBtr0077095,FBtr0077097 3 3 3 99 3L 5751686 5751765 GTGACTAGTATCACCCAAGAG 59 5751826 5751844 ACATGTATGCATTGGTGCT 59 NA Drosophila melanogaster 50 mthl2 FBgn0035623 FBtr0077088,FBtr0077087 2 2 2 99 3L 5598876 5598894 TCTGTTACATGATGTGCCT 58 5598957 5599035 TATCCCAAGAAACCTGCTG 59 NA Drosophila melanogaster 50 CG32252 FBgn0052252 FBtr0073251 2 1 1 221 3L 4222349 4222418 GAAGAAGTCTGCTCATGGT 59 4222146 4222164 ACCACAATTCTGATTGCTC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12182 FBgn0028504 FBtr0072955 1 1 1 97 3L 2597134 2597203 CTTTGTGGAGATCTCCCTC 59 2597055 2597073 ACTCGTAGAGTTCTTGCAG 59 NA Drosophila melanogaster 50 CG16758 FBgn0035348 FBtr0072963 1 1 4 121 3L 2500450 2501077 GAAGACACGTATCCCTATGAG 59 2500349 2500367 ATCATATCGGCCAATGAGC 59 NA Drosophila melanogaster 50 Aprt FBgn0000109 FBtr0089421,FBtr0089420 1 2 2 80 3L 1884237 1884331 TACGGTATTGACACCTTTGAG 59 1884177 1884195 GGCTAGTAGATCGTCAACG 59 NA Drosophila melanogaster 50 CG7971 FBgn0035253 FBtr0113123,FBtr0072807,FBtr0072806,FBtr0100219 3 4 5 233 3L 1659859 1659877 AGAATGTCCGAAAGAAGGC 59 1658334 1658352 ATGATCTCGTATCCTTGCG 59 NA DesignNoJunction Drosophila melanogaster 50 snoRNA:Or-aca1 FBgn0082925 FBtr0113530 2 1 1 60 2R 18495066 18495084 TGTTGGAACTTATAGCCGT 58 18495108 18495126 GCGACATGCACTTAATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 itp FBgn0035023 FBtr0110792 1 1 2 84 2R 20443078 20443529 ATACACCGATTATGCAAGG 57 20443577 20443595 TCTCTTCATCGTCGATCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13563 FBgn0034966 FBtr0113117 1 1 1 143 2R 19943279 19943297 TACTGGTACAACGCTAGGA 59 19943404 19943485 GAAGATGCTCCTCTTCGAG 59 NA Drosophila melanogaster 50 CG5339 FBgn0034925 FBtr0072220 1 1 1 89 2R 19785292 19785310 CATACTGTCCGAGGAACAG 59 19785164 19785239 ATATCCAGCAACGTGACAG 59 NA DesignNoJunction Drosophila melanogaster 50 Gr59a FBgn0045483 FBtr0071964 1 1 1 65 2R 18969012 18969091 GCATGTCCAATGAGTTGAG 58 18969120 18969138 AGACCAACAGATCCAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34209 FBgn0085238 FBtr0112402 3 1 1 217 2R 18928887 18929136 TCATGAATGGACTTGGATCC 59 18924319 18924337 TGGGATTGTACGATGTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13501 FBgn0034684 FBtr0071804 1 1 1 60 2R 17947798 17947817 TCTAAATCCACTGAATGCCC 59 17947693 17947778 CTTCAACTTTCTAACAAGGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 PpN58A FBgn0025573 FBtr0071734 3 1 1 60 2R 17769601 17769619 AGTCCATCGAAACATTGAC 57 17769559 17769578 TAGAACTTGGTCGGATACCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sdc FBgn0010415 FBtr0071707,FBtr0071706,FBtr0071705 2 3 3 143 2R 17299915 17367606 CTCAAGATCAGAAATCGGTG 58 17286794 17286815 GATCTTTCTCTAGATCTTCGTG 57 NA Drosophila melanogaster 50 CG30391 FBgn0050391 FBtr0071621 2 1 1 61 2R 17153595 17153613 AATTCTGCTGGTGATCGAG 59 17153552 17153571 CTAGCTCCTTCCTATAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL54 FBgn0034579 FBtr0071533 2 1 1 61 2R 16948710 16948788 AAATCAAACCGGATTCGGA 59 16948811 16948831 AACTATGCCTTCCGTATTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3216 FBgn0034568 FBtr0071551,FBtr0071552 3 2 2 81 2R 16875160 16875242 CATAATGAAAGGCTTCTGTGAG 59 16875100 16875119 GAGACTCTCGAGATTGTTGG 59 NA Drosophila melanogaster 50 exu FBgn0000615 FBtr0086243,FBtr0086242,FBtr0086244 2 3 3 93 2R 16557556 16557574 GAATCTGAATCCAGCTGCT 59 16557398 16557502 GATCTTATAAGTCTGCATCGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Ate1 FBgn0025720 FBtr0086319,FBtr0086318,FBtr0086317 2 3 3 105 2R 16142991 16143009 TACATACACTCCTGTCCCA 59 16142845 16142922 CACGAATAACATCGGTGAG 58 NA Drosophila melanogaster 50 CG33958 FBgn0053958 FBtr0114576,FBtr0099994 2 2 2 80 2R 14074503 14074521 TCCATTAATCGTGGATTGC 57 14074345 14074459 AACTAGGTATCGCCATACG 58 NA Drosophila melanogaster 50 CG6262 FBgn0034121 FBtr0087154,FBtr0100615,FBtr0087152 1 3 5 80 2R 12247595 12247614 TCGATATGTTCACCAATTGC 58 12247656 12247763 GATCATTGAAGTGCTTCTCG 59 NA Drosophila melanogaster 50 CG15710 FBgn0034120 FBtr0087169 3 1 1 62 2R 12235319 12235338 TTAATCTGTGATCGTTGTGG 57 12235276 12235294 TTTCAGATGACGGTGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33465 FBgn0053465 FBtr0100534 2 1 1 90 2R 11707083 11707157 AAACTCAGATCTTGTCAAGC 58 11707012 11707030 ATCATTGGTGGTCTCATCC 59 NA Drosophila melanogaster 50 CG30464 FBgn0050464 FBtr0087330 1 1 1 60 2R 11394381 11394401 GAGGAGAACTATCAAACTCTG 57 11394421 11394441 CATTTAGAAGAATCAGACGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12858 FBgn0033958 FBtr0087476 3 1 1 116 2R 10631362 10631380 CATGAACTACGGCATTGAG 58 10631202 10631283 GCCTCTGGATATAGATTGGG 59 NA Drosophila melanogaster 50 Arc1 FBgn0033926 FBtr0087560 3 1 1 169 2R 10247467 10247485 TAGAAGGTATCAGCGACGA 59 10247316 10247334 CATGTAGATCTGGTAGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33798 FBgn0053798 FBtr0091802 2 1 1 123 2R 8881778 8881796 GTTACTGTAGATGGCTGCA 59 8881883 8881972 TTATGTCATGGTCGTAGGG 58 NA Drosophila melanogaster 50 Amph FBgn0027356 FBtr0087828 3 1 1 98 2R 8497299 8497318 AGTAGTTAATAGGCACAGCG 59 8497379 8498099 TCAGCAGTATTGGCATCAG 59 NA Drosophila melanogaster 50 CG8525 FBgn0033735 FBtr0087927 3 1 1 259 2R 8313649 8313667 GGATAAGGTGGCTATTGCA 59 8313890 8313970 AAACATTATCCATGGTGCC 58 NA DesignNoJunction Drosophila melanogaster 50 Tsp47F FBgn0033629 FBtr0088151,FBtr0088152 3 2 2 112 2R 7265620 7265638 GGGCCTGATCATATTCCTG 59 7265467 7265485 GCTCCACAATGAAGATGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Syx6 FBgn0037084 FBtr0088104,FBtr0088103 1 2 3 128 2R 7108119 7108443 CACTATCAGCATCGTTGAG 57 7108535 7108553 TTCAGGCTCATCTTATCCT 57 NA InUTR Drosophila melanogaster 50 CG13230 FBgn0040764 FBtr0088204 1 1 1 89 2R 7042471 7042489 CATCTGTCTGGTCCTTGTC 59 7042541 7042640 TCGATTATCTTCTGGATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12128 FBgn0033473 FBtr0088393,FBtr0088394 2 2 2 70 2R 5915094 5915112 GACAAGGCAATAGAACCAG 58 5915146 5915228 TGCTTTCTACAGCTCTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shrb FBgn0086656 FBtr0088623 1 1 1 88 2R 5030496 5030572 TCAGAATATGGACGTGGAC 58 5030426 5030444 AAATGGCATCGGAAATCTC 58 NA Nonspecific Drosophila melanogaster 50 CG8058 FBgn0033382 FBtr0088580 2 1 1 68 2R 5021253 5021272 ATTACCTTATCCAGGTGGTC 58 5021374 5021392 TCAGATACTGCTTGAACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8777 FBgn0033376 FBtr0088565 1 1 1 82 2R 4988036 4988056 GGGTAGCAATGAATCAATTCG 59 4988100 4988168 ATTGTATTGCACTGTCCCA 59 NA Drosophila melanogaster 50 CG34219 FBgn0085248 FBtr0112412 2 1 1 68 2R 4806217 4806235 TACACGCTAAACGATGAGG 59 4806167 4806185 CACCCTGTAGTGATACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8262 FBgn0027513 FBtr0088685 1 1 1 100 2R 4786812 4786881 ACCAATCAAGCAGGTAGAC 59 4786730 4786748 AACTGAGGAATCACTCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41118 FBgn0069933 FBtr0111234 1 1 1 63 2L 22812608 22812626 GAGACCGAAGAAGAGAAGC 59 22812563 22812581 AATTTATTTGCAGCTGCGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His2A:CG33829 FBgn0053829 FBtr0091833 1 1 1 60 2L 21478465 21478484 GAATTATTCCGCGTCATCTG 59 21478507 21478525 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His4:CG33907 FBgn0053907 FBtr0091911 2 1 1 113 2L 21430016 21430037 GGGATTAAAGGATAGAACAGTG 58 21429924 21429943 TACCTTGGATGTTATCACGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 dimm FBgn0023091 FBtr0081514 1 1 1 93 2L 21339194 21339212 TTACAACACAGACGGACAC 59 21339269 21339351 TAGCTGTGAAGTTCGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9335 FBgn0032895 FBtr0081426 2 1 1 78 2L 20856308 20856327 ATTAACTCCGATCACGAGAG 58 20856429 20856447 AGAATCGCTTGGTGATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 cdc23 FBgn0032863 FBtr0081362 1 1 1 60 2L 20461030 20461049 AAATGCCTAGACTCAGAGGA 59 20461132 20461150 AGTCAATCGTCTTCAGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 fws FBgn0024689 FBtr0080999 2 1 2 104 2L 17480379 17480398 TTATGTGATCAGCTCTGCTC 59 17480241 17480313 ATCTTCAAGGCATTAACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10839 FBgn0028858 FBtr0080800 3 1 1 60 2L 15979946 15979964 TATGATCAAGGACTGGACG 58 15979988 15980006 GATCTCGCTGAGATTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7968 FBgn0028532 FBtr0080551 1 1 1 60 2L 13849600 13849681 CAGAACTGAGAACTTTGGT 57 13849703 13849723 ATCCAATCCCTCGATAATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9014 FBgn0028847 FBtr0080579 2 1 1 141 2L 13723181 13723200 AAGATCAAGTGCACCTTCTC 59 13723001 13723077 CCTTGGGTACCTTCATTCC 59 NA Drosophila melanogaster 50 CG33642 FBgn0053642 FBtr0091619 2 1 1 95 2L 13530375 13530456 CGAACTTCAACTATACGTTGAC 59 13530512 13530530 AATATTCGGTGACAGTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18302 FBgn0032266 FBtr0080095 3 1 1 83 2L 10535691 10535775 GAGACCATTAGTGTTTATTGCC 59 10535819 10535837 TTATGTATCAGGCTTCGCC 59 NA Drosophila melanogaster 50 CG5375 FBgn0032221 FBtr0113033,FBtr0080058 3 2 2 174 2L 10328735 10328818 CAGATGAAAGTAAAGGCAAGG 59 10328581 10328600 ATTCCTGGAGATTGTTGACC 59 NA Drosophila melanogaster 50 Nckx30C FBgn0028704 FBtr0079926,FBtr0079928,FBtr0079927 1 3 3 118 2L 9733529 9742390 CAACGTGGTATCAATGACAC 59 9733430 9733448 ATGATGTGCAGGATGACAG 59 NA Drosophila melanogaster 50 CG9568 FBgn0032087 FBtr0079765 1 1 1 171 2L 9010955 9011044 CATGCAGCAAACTACACTC 59 9011179 9011197 TTGTATAGACACTGCTGCT 58 NA Drosophila melanogaster 50 CG9520 FBgn0032078 FBtr0079790,FBtr0079788,FBtr0079789 3 3 3 130 2L 8945117 8945371 CATACTCAATGAAGGTCGCT 59 8945006 8945026 CATCGTATGGCATGAATTCAC 59 NA Drosophila melanogaster 50 CG7787 FBgn0032020 FBtr0079601 3 1 1 150 2L 8320480 8320498 TTGCAACTGTTTGATGCTG 59 8320682 8320700 TGTCATCATGTCCTTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8673 FBgn0031986 FBtr0079575 2 1 1 60 2L 8125245 8125263 AAGTACGTTCTCAAGACGG 59 8125287 8125305 TGAGGGTCAATAACTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trf FBgn0010287 FBtr0079542 3 1 1 75 2L 8073106 8073197 CAACATGAGATACGATTGCAG 59 8073234 8073252 AGTTGATTGCCTTGAGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Uro FBgn0003961 FBtr0079486 1 1 1 79 2L 7780615 7780633 CAGATCACTGCACAATCAC 58 7780673 7780763 GATCTGTTCTCCTTATAACCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10399 FBgn0031877 FBtr0079351 3 1 1 144 2L 6960470 6960547 CTTGCACTTACAGCAAAGC 59 6960655 6960673 CGGACAATTGGTTGATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34310 FBgn0085339 FBtr0112506,FBtr0112507 1 2 2 91 2L 6674206 6674224 ACTGAAACTAGTGGAACCA 58 6674356 6674374 GTCGATCCAATACCGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11319 FBgn0031835 FBtr0089641 1 1 1 93 2L 6574307 6574405 GTTATATGATTCCACGTATGCG 59 6574235 6574253 GTACTTGGACAGGTCACTC 59 NA Drosophila melanogaster 50 mRpL28 FBgn0031660 FBtr0078996 3 1 1 66 2L 4975092 4975162 TACAAAGCTGGAATCCTCC 58 4975192 4975210 TTCTTTCTTGCCGAAAGGA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 BG642163 FBgn0083938 FBtr0110769 2 1 1 100 2L 4641386 4641462 CTCCAAGAACAACTTCCCA 59 4641526 4641544 AAGGTATCCTGAGTTTGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ft FBgn0001075 FBtr0077478 1 1 1 80 2L 4209379 4209471 TATGCCACTATACAGGTGAG 58 4209318 4209336 TTCCGGTATGTCAAAGGAG 58 NA Drosophila melanogaster 50 CG3285 FBgn0031522 FBtr0077586 3 1 1 81 2L 3331872 3331892 TCGAAGAGATGAAGTATCTCC 58 3331933 3332012 GGTCTGGTTATGAAATCTCTG 58 NA Drosophila melanogaster 50 CG15382 FBgn0031393 FBtr0077832 2 1 1 70 2L 2156159 2156177 CTCCAATTCCCAGTAAGGA 58 2156208 2156229 CTCTCGAATCATATTTCTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4259 FBgn0031389 FBtr0077854 2 1 1 83 2L 2129181 2129200 TATACTTTGCGTTTCTCACG 58 2129055 2129135 ATGTTTCACGTCGTATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12674 FBgn0031388 FBtr0077827 2 1 1 121 2L 2080947 2080965 GGTGAGGGTTACATACTCC 58 2081049 2081133 TTCAGCAGAAACTTGTTAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31664 FBgn0051664 FBtr0077895 1 1 1 80 2L 1825124 1825194 AAATAACAGGGTCGTGGTG 59 1825062 1825081 AGAAGTTCACCTTCTTGGAC 59 NA Drosophila melanogaster 50 CG4375 FBgn0031295 FBtr0077997 1 1 1 60 2L 1026686 1026707 CAGATGAGTATGTCAATGAAGG 58 1026647 1026666 GCCTAGCTTTCAAATACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pi3K21B FBgn0020622 FBtr0078132 2 1 1 153 2L 299902 302027 AAGGACAAGTACATTGAGC 57 302144 302162 CATCCTTTAGCAACCAGAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG17078 FBgn0086855 FBtr0078138 2 1 1 80 2L 275245 275330 TGGCTCTAGTCAATTCACC 58 275183 275201 TCTGGCCTTCAATGTAGAC 58 NA Drosophila melanogaster 50 tRNA:CR33538 FBgn0053538 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG7378 FBgn0030976 FBtr0074649,FBtr0113004 1 2 2 62 X 18801683 18801701 GCATCTACATTGGTGATGC 58 18801789 18801807 TGATGCCCATCAATCTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Scamp FBgn0040285 FBtr0074080,FBtr0074079 3 2 2 189 X 15343794 15343812 AGTAGAATTCCCATGTCCG 58 15343427 15343445 TCGTTGAGTTGATCTGCAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 up FBgn0004169 FBtr0100561 1 1 6 91 X 13490773 13494112 AAGAGTACACAGGAGAGGG 59 13490700 13490720 GGTGATGTATTCTTTCAGCTG 59 NA Drosophila melanogaster 50 CG15754 FBgn0030492 FBtr0073782 3 1 1 113 X 13422922 13422940 GTTGAGGGCTTCTATGTCC 59 13423017 13423105 CCTCAGAAACTCAACTGGA 58 NA Drosophila melanogaster 50 CG10778 FBgn0029980 FBtr0071131 3 1 1 88 X 7826646 7826664 TGGAAGAATGCCTCTACAC 58 7826576 7826594 CATCATGAAGTCGCTTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34417 FBgn0085446 FBtr0112706,FBtr0112707,FBtr0112704 2 3 5 88 X 6448796 6448951 CACCACCAGATAACAAGCT 59 6449002 6449021 AGTAGGAGGAGTAGTTGGTG 59 NA Drosophila melanogaster 50 mod(r) FBgn0016038 FBtr0089724,FBtr0089723 2 2 4 99 X 516384 516490 ATATCAGGATTGCAGCTTCC 59 516551 516570 TACGTGTTGAGGAAAGTCTG 59 NA Drosophila melanogaster 50 CG40204 FBgn0058204 FBtr0113834 2 1 1 73 U 497479 497500 TGAACTATCACAAGATCCTGTC 59 497534 497552 TACTTACCTTCACAACGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sox100B FBgn0024288 FBtr0085735 2 1 1 196 3R 26891338 26891356 AATCTAGTCCAGGCATCAG 58 26907622 26907640 GGCTTCTTATCACTGTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG31019 FBgn0051019 FBtr0085665 3 1 1 60 3R 26424349 26424431 TACAACGAAGATGGCTATTACC 59 26424452 26424470 AGTACTGAAGCAAAGTCCT 58 NA DesignRelaxed Drosophila melanogaster 50 bai FBgn0045866 FBtr0084758 2 1 1 61 3R 20865520 20865541 GCTTTATATCCAAAGTTCCTGC 59 20865627 20865645 GGTCAAGAGCGATACTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5805 FBgn0039223 FBtr0084743 1 1 1 96 3R 20611625 20611702 CTATCAGGACGAACTGTTCC 59 20611548 20611566 TATTGTCGTTGTGAAGCCA 59 NA Drosophila melanogaster 50 Plip FBgn0039111 FBtr0084454,FBtr0084453 3 2 2 112 3R 19584916 19584934 CTAAGTTCCTCCTACCAGC 58 19585009 19585090 CATCCGTTCTTCATCATGAG 58 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 1 22 22 84 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202454 17202549 TTCAGGAATACGATAGCGT 58 NA Drosophila melanogaster 50 ppan FBgn0010770 FBtr0084012 3 1 1 262 3R 16943013 16943031 GGGCGAAGTACTGTATCAC 59 16943257 16943326 TGAACAGTTCTTCGTCTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG7988 FBgn0038582 FBtr0083561 1 1 1 60 3R 14047109 14047127 ACGAGGATGAACTGATCAC 59 14047151 14047169 TCAGATTCAAGCTTCAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Spn5 FBgn0028984 FBtr0083142,FBtr0083141 1 2 2 80 3R 11029204 11029285 TGGAACTTAATCCTATCCTTGC 59 11029145 11029163 AGGTCAGATCATCGAAGGT 59 NA Drosophila melanogaster 50 HtrA2 FBgn0038233 FBtr0082987 3 1 1 66 3R 10335968 10335986 AAGGTTATCGTTGGGTCAC 59 10335836 10335856 TTATGTGGGTCACTATGTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 snk FBgn0003450 FBtr0112833,FBtr0082716 2 2 2 83 3R 8866930 8866948 ACAATGTCCCTGTCATCTG 59 8866809 8866884 TGTACTCCTGACATTTGGTG 59 NA Drosophila melanogaster 50 CG6465 FBgn0037818 FBtr0082323 1 1 1 80 3R 6501868 6501886 CTCCCTTGCTAATGGTCTG 59 6501749 6501824 ATTTGTGGAGGTTAGCCTC 59 NA Drosophila melanogaster 50 Pnn FBgn0037737 FBtr0082126,FBtr0113210 1 2 2 60 3R 5567366 5567386 TTCGAGATCCGTAGATTAGAG 58 5567408 5567426 CTTCCCAGACCTTGAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8228 FBgn0037711 FBtr0082070 3 1 1 101 3R 5390089 5390161 CGCCTACTACATTTATTTCAGC 59 5390222 5390241 TACAGTTCCTTCACTTCTCG 59 NA Drosophila melanogaster 50 Fps85D FBgn0000723 FBtr0082051,FBtr0082052 3 2 4 103 3R 5199589 5216617 CCTGAATCATCTCACCGAC 59 5199504 5199524 TTATGTAGTTCTCCTCGAAGC 59 NA Drosophila melanogaster 50 alpha-Est1 FBgn0015568 FBtr0081544 3 1 1 113 3R 3373518 3373536 AAGACGTAGTGGTTGTCAC 59 3372809 3372827 CCATCACTTGGTCCTTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Antp FBgn0000095 FBtr0081652,FBtr0081650,FBtr0081647,FBtr0081654,FBtr0081653,FBtr0081655 3 6 11 159 3R 2724257 2734249 TTGGTAAGTGTCAAGAACG 57 2724116 2724134 CAAATCTTTATCTGGCGCT 58 NA Drosophila melanogaster 50 CG2017 FBgn0037391 FBtr0078664,FBtr0114518,FBtr0078663,FBtr0078662,FBtr0078661 1 5 5 92 3R 1685467 1685485 TATGTTTAGGCACATGCAC 58 1685182 1685200 TTGACCACATTACCCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 SPoCk FBgn0052451 FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532 2 4 4 60 3L 22771883 22771901 AAATGGTGACTGGAGATGC 59 22776520 22776538 TCGATACCGATGAGATTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7470 FBgn0037146 FBtr0078477 3 1 1 170 3L 21969813 21969893 GATAGCAAAGAGTTTGACGG 58 21970100 21970118 GAGATTGTTGCGTGTTTCC 59 NA Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 1 8 8 118 3L 16956803 16956821 AAGACCCATTGAAGGTAGC 59 16956901 16956979 CAATAGACCCTTGTGAATCAC 58 NA Drosophila melanogaster 50 Lmpt FBgn0036672 FBtr0089452,FBtr0089457,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459 2 6 8 123 3L 16905417 16906329 CATCGACTCCAAGGATCTG 59 16906415 16906434 ACAGTAGATCTTATCCGCCT 59 NA Drosophila melanogaster 50 Eig71Ei FBgn0014849 FBtr0075574 3 1 1 89 3L 15653060 15653078 CTTTAACGACTACTGTCGC 58 15653131 15653210 CGCACAGTAGATAAACAGG 57 NA Drosophila melanogaster 50 GRHRII FBgn0036278 FBtr0075989 3 1 1 161 3L 12340423 12340441 CTACCTGAGCACCTATGTC 58 12335698 12340299 TGGAAGATGAAGAACTGTGG 59 NA Drosophila melanogaster 50 CG6163 FBgn0036155 FBtr0076181 2 1 1 71 3L 11356419 11356437 GGTCAGAGTAGAACCTCAG 58 11356176 11356384 TTGCATAAGAGTCGGTGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG5660 FBgn0035942 FBtr0076560 1 1 1 105 3L 8955365 8955385 GCTACAGCAACTACAATTTCC 59 8955221 8955239 TTTCCTATCGCAGGTTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Ets65A FBgn0005658 FBtr0077055 3 1 2 122 3L 6105297 6105488 AGATTCCTCGTACAAATCGT 58 6107445 6109064 TGATATGGATCAGGTTGCC 59 NA Drosophila melanogaster 50 CG12605 FBgn0035481 FBtr0073168 1 1 3 73 3L 3959966 3959984 TAGTATTCAGCCCATGGAC 58 3959843 3959861 AAATCACCTTGCCATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13902 FBgn0035166 FBtr0072595 2 1 1 60 3L 840342 840360 GTATCTCCCATGCACTACG 59 840300 840318 TCTTCGAACCGAATACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kaz1-ORFB FBgn0063923 FBtr0100851 2 1 6 125 3L 217099 217227 CTCCTGAACATAATGCGTG 58 217316 217334 GTTGCCTACCAGATTAACG 58 NA InUTR Drosophila melanogaster 50 l(2)efl FBgn0011296 FBtr0072101 1 1 2 175 2R 19572656 19572674 AAGTTCGAGGTCATTCTGG 59 19572499 19572517 TGATGGAATTCGGACTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 px FBgn0003175 FBtr0071838,FBtr0112820 2 2 3 83 2R 18424404 18424422 GACTGCAAGGATTACTTGG 58 18424275 18424359 GGGAATGTTGTATCTTCTGTG 58 NA Drosophila melanogaster 50 hts FBgn0004873 FBtr0086550,FBtr0086549,FBtr0086546,FBtr0086545,FBtr0086547,FBtr0086548 3 6 6 87 2R 15297367 15297385 AGAACGATGTCGAACTACC 59 15297237 15297316 TTCTTCCAGATCCCTTGAC 58 NA Drosophila melanogaster 50 qkr54B FBgn0022987 FBtr0086925,FBtr0086923,FBtr0086924 3 3 3 85 2R 13358315 13358334 GTACATACGCGATTGTATGG 58 13358382 13358455 TTTCTATCTCGCCTTCCAG 58 NA Drosophila melanogaster 50 CG15614 FBgn0034168 FBtr0087050 3 1 1 101 2R 12833847 12833867 ATTATAGCCTTCCGGAAATGG 59 12833930 12834036 CATTTGGTGCTGATATCGC 59 NA Drosophila melanogaster 50 CG5522 FBgn0034158 FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026 3 6 6 89 2R 12676159 12676301 ACTACACTATAGCAGCCTC 57 12676354 12676372 AAATAACCGCATCCAACTG 58 NA Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 2 5 7 81 2R 11836642 11836721 TTTGCTACGTGCTACTCTC 59 11836579 11836599 TCCGCTCTAGTTATATTCGAG 58 NA Drosophila melanogaster 50 Obp50c FBgn0050072 FBtr0087553 1 1 1 199 2R 10259812 10259831 CATATAGCCCTGCTGATCTG 59 10260056 10260130 CATTCATAGAGGCAGGGTG 59 NA Drosophila melanogaster 50 CG18324 FBgn0033905 FBtr0087523,FBtr0087524 3 2 2 62 2R 10057159 10057177 CTGCATATTTACCGGACCA 59 10057202 10057221 GTTCAAGCTTGGTAAAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr49Ac FBgn0033725 FBtr0087917,FBtr0087916 3 2 2 89 2R 8276583 8276769 CGATCACTCTTACCTGACTG 59 8276821 8276839 TAGAATCCCTTGGCATGTG 59 NA Drosophila melanogaster 50 CG11919 FBgn0033564 FBtr0100498 3 1 1 101 2R 6768255 6768273 TATCAAGCAAATGCTCCAG 57 6768338 6768419 TAGAAGTTCTCCTGAACGT 57 NA Nonspecific Drosophila melanogaster 50 Rep2 FBgn0028408 FBtr0112930,FBtr0088597 2 2 2 145 2R 5184910 5184928 TTGTTCTGGAGTGTGATGG 59 5185037 5185785 TATAGCTGATATGGCAGCC 58 NA Drosophila melanogaster 50 Tsp42Ea FBgn0029508 FBtr0086172,FBtr0086171,FBtr0086173 2 3 3 109 2R 2884499 2884517 CAGAAGGACAAGTACCTGG 59 2884589 2884674 CAGCATTTCATGCTGATCTG 59 NA Drosophila melanogaster 50 Df31 FBgn0022893 FBtr0085919,FBtr0085920,FBtr0100293 3 3 3 78 2L 21627628 21627646 AGGATGAGGTTCAGAATGG 58 21627568 21627586 TTACTGAGTTTGCTGCTCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876 2 7 7 116 2L 16467746 16468063 AAACTATTCCGAATCCCTGG 59 16467649 16467667 TTCTTGTAGTATGCCGTCG 59 NA Drosophila melanogaster 50 CG17124 FBgn0032297 FBtr0080118,FBtr0080117 3 2 2 98 2L 10745671 10745689 CATCGACGAGATACTGGAC 59 10745528 10745546 TTCGATATGTCTGATTGCG 57 NA DesignNoJunction Drosophila melanogaster 50 Glt FBgn0001114 FBtr0079727,FBtr0079726,FBtr0079725 1 3 3 279 2L 8674101 8674119 ACCATCCATTAACCCATCC 59 8674362 8674773 ATCATAGATTCGCGACACG 59 NA DesignRelaxed Drosophila melanogaster 50 Cka FBgn0044323 FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538 2 4 4 99 2L 8036253 8036272 AACATCAATGGAAACGAGAG 58 8036391 8036411 CCACGATTATTTCATCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7742 FBgn0031690 FBtr0079092 3 1 1 94 2L 5213324 5213400 GCTACATGACTACGATATTGAG 58 5213251 5213269 GAATGTCCTTGAAGACCAG 57 NA Drosophila melanogaster 50 Rtnl1 FBgn0053113 FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039 2 7 7 143 2L 4994705 4994794 CCCTTTAAGGATTACCTGGA 58 4994581 4994601 GATCGAATCGATGATATCCTC 57 NA Drosophila melanogaster 50 CG34448 FBgn0085477 FBtr0112752 1 1 1 86 2L 2416924 2417002 TTGTCTCAGAAGATGCGTC 59 2416856 2416874 ATTCGACTTCAACCAGAGG 59 NA Drosophila melanogaster 50 CG5613 FBgn0030839 FBtr0074432,FBtr0074431 3 2 2 263 X 17320696 17320714 CTTCTGTTACTTCAGCCAC 58 17320941 17321461 ACAAAGCGGTATAGTCTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG9522 FBgn0030587 FBtr0073986 1 1 1 143 X 14742526 14742690 CATTCTTCAGCGATGTTCC 58 14742401 14742419 CTATGTTCTCCACTCCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14053 FBgn0029603 FBtr0070424 2 1 1 60 X 2086469 2086488 TTATGTTCTGTGGACGATCG 59 2086428 2086446 AGAAGATGACTGCCATACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sox102F FBgn0039938 FBtr0100600,FBtr0089252 3 2 2 82 4 822726 823031 AAAGTCATGGGAGAGTGTG 59 822662 822682 ATTTACTGAGTCACGACTCAC 59 NA Drosophila melanogaster 50 snmRNA:342 FBgn0065098 FBtr0091662 1 1 1 60 3R 19555866 19555885 GATATGGACGAGTTGGTAGG 59 19555825 19555844 GTTTCTCAGACGAGAAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14507 FBgn0039655 FBtr0113305 3 1 1 74 3R 25052651 25052958 CAGGATCATAGGGACACTC 58 25052595 25052613 GAACTCCAGACGAATCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14304 FBgn0038629 FBtr0083639,FBtr0114497 1 2 2 80 3R 14419607 14419628 ATTACTGTGATCTCAATGGAGG 59 14419481 14419566 CGCAAGTTAAGGCAATCTG 59 NA Drosophila melanogaster 50 CG7998 FBgn0038587 FBtr0083563 2 1 1 148 3R 14053486 14053504 GATCTGTTCAACGTGAACG 59 14053615 14053692 TAAACACCAGCCTTCTTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 sim FBgn0004666 FBtr0082711,FBtr0082710 2 2 2 89 3R 8900718 8900810 GGATTTAAGGTGATACACTGC 58 8900861 8900879 GAGATTCTGGATGAGGCTG 59 NA Drosophila melanogaster 50 scpr-A FBgn0037889 FBtr0082357 3 1 1 62 3R 7066934 7066955 TTCTCCAATTGATTCTCCTAGC 59 7066978 7066996 GGAGAGCACAATAGTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1142 FBgn0037504 FBtr0081559 1 1 1 110 3R 3299067 3299088 CCTGGAAAGTAATATGAAGAGG 57 3298565 3298996 TCAGCTCTGTTGATGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2023 FBgn0037383 FBtr0078666 1 1 1 81 3R 1650016 1650087 TACACGACATCCTGAACAG 59 1649953 1649971 ATAGCAGACAGTTTGGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL44 FBgn0037330 FBtr0078768 1 1 1 60 3R 1295717 1295737 TGATACAGTCTACGGAATACC 58 1295677 1295695 ACTGCGTGTAAAGATTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34306 FBgn0085335 FBtr0112502 1 1 1 63 3R 758296 758454 AATATCAAGTTCAAGAGCCC 57 758480 758498 CTACGCTCTGATATCACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 serp FBgn0052209 FBtr0074953 3 1 1 102 3L 19695591 19698919 GAACACCTGTGATATCGAC 57 19695507 19695525 AATCGATGTACCATCCTCC 58 NA Drosophila melanogaster 50 Cpr76Ba FBgn0036878 FBtr0074977 1 1 1 61 3L 19511350 19511368 ACCAATTGAGCATCCTCTG 59 19511307 19511325 ATGAGGGATGTAGCTAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Chmp1 FBgn0036805 FBtr0075092 2 1 1 79 3L 18676860 18676879 AAGGAATTGGAACGAAACTC 58 18676800 18676818 TTCTGAATCGCCTTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33258 FBgn0053258 FBtr0075442 1 1 1 60 3L 16076407 16076428 TTCTTTACGATCTACAAGGAGG 59 16076449 16076467 CAGTTCTTTCGCAGTAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32102 FBgn0052102 FBtr0075978 3 1 1 73 3L 12462361 12462380 CATGCGATTTATACGTGTCC 59 12462307 12462325 CAAATGTGCAGTGAAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32088 FBgn0052088 FBtr0076116 2 1 1 81 3L 11722722 11722740 TGAAACTCTCAAGGACAGC 59 11722782 11722885 GGCTACATTTCTTTGAAGAGTC 59 NA Drosophila melanogaster 50 CG10575 FBgn0035632 FBtr0077120 1 1 1 65 3L 5760734 5760752 TGTTTACGAACCTGGTCAG 59 5760687 5760705 GAAACAATACCCTGTCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nab FBgn0053545 FBtr0091511 3 1 1 172 3L 4154235 4154374 AAGTTCTCAGTCAGCAAGG 59 4153996 4154014 CTCAGATCCACTGATTCCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG12011 FBgn0035257 FBtr0072764 3 1 1 105 3L 1694644 1694734 GCATTCTCTACGACTCCTG 59 1694803 1694821 GATTTCTTGAGGTGAAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mtacp1 FBgn0011361 FBtr0072676 2 1 2 156 3L 1331146 1331164 CTACGACAAGATCGATCCC 59 1331393 1331411 AGGTTTAAGCAGCTTCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Vha100-3 FBgn0028669 FBtr0086602 1 1 1 60 2R 14796859 14796877 GTCGGAGATTTGGATTCAC 58 14796817 14796835 CGATACTGAGCCCAATACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slim FBgn0026173 FBtr0086692 2 1 2 75 2R 14329809 14331168 CGTGTTGATTTCTCATGGC 59 14331207 14331225 CGTTCGGTAAACGTAACAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5009 FBgn0027572 FBtr0089548 3 1 1 91 2R 13650486 13650564 GAACTATGATGTTTGTGCGT 58 13650617 13650636 AACAGCTGAATACCTAGTGG 59 NA Drosophila melanogaster 50 CG8407 FBgn0033687 FBtr0087985 1 1 1 60 2R 8041214 8041411 AATACTCATCGAACTACGAGC 59 8041432 8041451 AACTTCTTGTCCATGTTCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CAP FBgn0033504 FBtr0088342,FBtr0088347,FBtr0088341,FBtr0088344,FBtr0088338,FBtr0088345,FBtr0088340,FBtr0088343,FBtr0088339,FBtr0088346 1 10 10 83 2R 6192541 6192559 TGATGCCAACTGGTATGAG 59 6192605 6192993 CCATCTCGACTGACAATCTC 59 NA Drosophila melanogaster 50 Or42b FBgn0033043 FBtr0086051 1 1 1 60 2R 1684849 1684869 CTTTCAGATATCCATGAGCAG 58 1684745 1684763 GGTTATCACGGAGAAAGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG8679 FBgn0032934 FBtr0081488 3 1 1 60 2L 21217633 21217651 TTCCATCAGTACGATGAGC 59 21217591 21217609 AGTCCTCCTGACTAATAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17323 FBgn0032713 FBtr0081104 2 1 1 253 2L 18825167 18825251 AATTACTATCGGTTCCCGC 59 18825466 18825486 CCAACTAATCAGGATCACTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Tap42 FBgn0051852 FBtr0080466 2 1 1 63 2L 13367800 13367818 ACGAGCTAGAAGTTACCGA 59 13367844 13367933 GCAGTCTTCACTTTGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14946 FBgn0032405 FBtr0100290 3 1 1 166 2L 12063862 12063938 CAGGGATCTGATTCGAACC 59 12063714 12063732 GGATGGTTACCTCCATGAG 59 NA Drosophila melanogaster 50 snRNA:U6:96Ab FBgn0004189 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-281aS FBgn0067711 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30235 FBgn0050235 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-1 FBgn0046834 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 let-7 FBgn0043885 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snmRNA:430:CR33742 FBgn0053742 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi28S-1135d FBgn0083009 FBtr0113572 2 1 1 90 X 17040211 17040232 CTAGTTGAAGGAAATTCCATCC 58 17040142 17040162 GCTTAATCTTCAAGCACTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DIP1 FBgn0024807 FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370 3 4 4 170 X 21497272 21497350 TTCTTTGCATTATGCGTCC 58 21497120 21497138 GAGAGTTGCACACTTTCAC 58 NA Nonspecific Drosophila melanogaster 50 bbx FBgn0024251 FBtr0100599,FBtr0100598 2 2 2 74 X 21241691 21241710 ATATTCTGCAAGAGACATCG 57 21241747 21241835 TATCTTTGTAATGGCACGG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14581 FBgn0040645 FBtr0077186 2 1 1 75 X 21126536 21126554 GATAACCAGAATGGGACCG 59 21126593 21126611 TTAACTGCTGACCTCTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1835 FBgn0031127 FBtr0077277,FBtr0077278 3 2 2 61 X 20540148 20540166 ACTAGGCGACATTTACTGG 59 20540191 20540209 ACATCAGACTTCCGATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sw FBgn0003654 FBtr0089406,FBtr0089407 1 2 13 95 X 20105884 20105902 TGGTCTACACAAAGCAGAC 59 20104509 20105411 TAGCATGAGCTTTACGTGG 59 NA Drosophila melanogaster 50 CG14200 FBgn0031023 FBtr0074721 1 1 1 93 X 19404262 19404280 TTATCCCTTCGAATGCGAG 59 19405171 19405189 GTCCTCTGAGAACTTGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7095 FBgn0030962 FBtr0074637 2 1 1 95 X 18715496 18715630 TATGCGTTTATGGGATACG 57 18715689 18715707 CAGACACAGTTGATTAGCA 57 NA Drosophila melanogaster 50 CrebB-17A FBgn0014467 FBtr0074555,FBtr0074556,FBtr0112879,FBtr0074554,FBtr0074557,FBtr0112877,FBtr0112878 3 7 7 174 X 18267097 18267115 GGAGTCATACAGACAGCAG 59 18267326 18267344 TCTTACACGGAAAGGTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 RhoGAP16F FBgn0030893 FBtr0074512,FBtr0074513 3 2 2 183 X 17990640 17990730 CGGTCACTTCAATAGAATAACC 58 17990874 17990892 CTGGTACTCGATCATCAGC 59 NA Drosophila melanogaster 50 CG5445 FBgn0030838 FBtr0074425,FBtr0074427,FBtr0074426 2 3 4 61 X 17197412 17198114 GATGAGTAACTGGAGCCTG 59 17198139 17198157 ACTGTAAGCTGCAGAAGTC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 f FBgn0000630 FBtr0074420 1 1 6 175 X 17156845 17156863 AGTATGATGAATCTGGGCG 59 17157001 17163972 GTATTGGCGCAAATATCCAC 59 NA Drosophila melanogaster 50 Gbeta13F FBgn0001105 FBtr0074109,FBtr0074106,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107 3 6 6 60 X 15755481 15755500 GCTCATTATCCGACTAAGCT 59 15755523 15755614 CTCTTGTTAGATGGTGGCT 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG15642 FBgn0030642 FBtr0074076 2 1 1 78 X 15361278 15361296 ATCATTTGTGGAACCTGGA 58 15361218 15361236 TATAGGCGTACGGATTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 acj6 FBgn0000028 FBtr0074016,FBtr0100326 2 2 4 94 X 15272252 15272270 CTCCTATCGAAGTTCGGAG 58 15265709 15271599 CGAAGATATCACCCTCGAG 59 NA Drosophila melanogaster 50 CG14414 FBgn0030571 FBtr0073931,FBtr0073930,FBtr0073932 2 3 3 219 X 14475705 14475797 TATGATGAAACGCAGAAGC 58 14475980 14475998 CGCGATCCTTGTTAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 Set2 FBgn0030486 FBtr0073779 1 1 1 87 X 13314261 13314279 AAACGTAAGCTACCAATGC 58 13314330 13314412 GACTCTGGGAACTCTTGAC 59 NA Drosophila melanogaster 50 CG15720 FBgn0030442 FBtr0110989,FBtr0073718 1 2 2 168 X 12927411 12927429 GAATTCCCAAACTTTCGGC 59 12927561 12927579 AGCTAGTGATGATCGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cac FBgn0005563 FBtr0073587,FBtr0073586,FBtr0073584,FBtr0073585 1 4 10 199 X 11848297 11856053 GTCGAACTCAATCAACGTC 58 11846241 11848134 TGATATTCCCGAACACCTG 59 NA Drosophila melanogaster 50 Cyp28c1 FBgn0030339 FBtr0073565 1 1 1 92 X 11734800 11734818 AACTCCAGTTGGTCAATCC 59 11734872 11734951 GTAGGCTTTCATTAAAGCAGG 59 NA Drosophila melanogaster 50 inaF FBgn0023077 FBtr0112903,FBtr0073614 2 2 2 66 X 11621081 11621099 CATAAGTCACGCTATGGGT 59 11621033 11621051 GATTAGAGGCATGTGACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16922 FBgn0030254 FBtr0073389 1 1 1 60 X 10849905 10849923 AACAATCTGACGGATGAGG 59 10849947 10849965 CTATTTCCGCATCATCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tango5 FBgn0052675 FBtr0071501,FBtr0071499,FBtr0071500 1 3 3 107 X 10655691 10655709 CACGTTTCTGCTCTATCTG 57 10655534 10655623 CAGATAATATCATCGGGATACG 57 NA Drosophila melanogaster 50 CG15307 FBgn0030192 FBtr0071442 2 1 1 83 X 10238018 10238036 ATAGGAGGCGTAACTACGA 59 10238083 10240893 ACGATCGGTAATTAAGCCT 58 NA Drosophila melanogaster 50 CG15312 FBgn0030174 FBtr0071421,FBtr0071423,FBtr0071422 3 3 3 71 X 9955170 9955254 GATAGTTCAGACTGGTCGTG 59 9955118 9955136 AAGCATACGTAGATTCCCG 59 NA DesignRelaxed Drosophila melanogaster 50 Obp8a FBgn0030103 FBtr0071307 3 1 1 261 X 9109372 9109391 TATCTCCATTGCTTCTGGTC 59 9109615 9109633 TGATGACATCGGACATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ND75 FBgn0017566 FBtr0071180,FBtr0071181 2 2 2 172 X 8143115 8143194 GCACTATTAGCAAATCCATCG 59 8142963 8142981 CTAGATAGCCACACTCTGC 59 NA Drosophila melanogaster 50 CG2147 FBgn0030025 FBtr0071166 1 1 1 67 X 8135143 8135161 CACAAGATTCAATCTCGCC 58 8135192 8135210 ATCCGGATATGGAATCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or7a FBgn0030016 FBtr0071186 2 1 1 60 X 8059137 8059155 TTATCATGAACTGGACGTG 57 8059095 8059114 AGATAGATAACGGCGTACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hdm FBgn0029977 FBtr0071133 1 1 1 106 X 7813103 7813124 CATACATCAGTTTACTGCAGTG 59 7812915 7812934 GTATATGTTGTTGACAGGCA 57 NA DesignNoJunction Drosophila melanogaster 50 CG3192 FBgn0029888 FBtr0100409,FBtr0070990 2 2 2 71 X 6571713 6571732 TACTATCCCTGGGACTATCC 58 6571585 6571603 GTACAGATCATGATCCGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3842 FBgn0029866 FBtr0070903,FBtr0070904 1 2 2 60 X 6236587 6236605 GGTGAGAAATTTCGTGGAG 58 6236627 6236647 ATTGATCAGTATATCCAGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15770 FBgn0029803 FBtr0070811 1 1 1 60 X 5659601 5659619 GGATAATACCGATGACGAC 57 5659643 5659661 ATATAAACCTGCAAGGCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sirt4 FBgn0029783 FBtr0070852,FBtr0070850,FBtr0070851 3 3 3 60 X 5558825 5558844 TGGCGGATATCAAGATATCC 58 5558784 5558802 CGAAAGTCGAACAGTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Usf FBgn0029711 FBtr0070701,FBtr0070700 2 2 2 60 X 4442355 4442374 AATATCAGCAATGCGAATCC 58 4442314 4442333 TGTGGTGATTGGTAATGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rala FBgn0015286 FBtr0070584,FBtr0070583,FBtr0070582 3 3 3 98 X 3603937 3603957 AGAGATAACTACTTTCGCAGC 59 3602942 3603880 GATTTGTTCTCTGAATTCCTGG 59 NA Drosophila melanogaster 50 CG10804 FBgn0029663 FBtr0070592,FBtr0114487,FBtr0070591 2 3 3 146 X 3374463 3374481 GATTATGTTCTTGCTGGCC 58 3374263 3374281 TAGAAGATCGGTATGCCCT 59 NA DesignNoJunction Drosophila melanogaster 50 phl FBgn0003079 FBtr0112818,FBtr0111025,FBtr0070401 3 3 3 147 X 2236245 2236263 CACAGATCACTCCAACTCC 59 2236374 2236460 CTCCGCCAGAATATTCCAG 59 NA Drosophila melanogaster 50 CG11596 FBgn0023522 FBtr0070318,FBtr0070320 1 2 3 115 X 1822606 1823045 TGGACCAGATTGATATTCCA 58 1823123 1823141 TTCTAAGGCTCCTTCAGTG 58 NA Drosophila melanogaster 50 CG14777 FBgn0026872 FBtr0070253 3 1 1 95 X 1362357 1362375 TGAAGACCTTTAGTCAGGC 58 1362498 1362516 TAATGGTCTGCAGGATAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12773 FBgn0024365 FBtr0070235 2 1 1 176 X 1246461 1246479 AACCTATGGCCAAAGTACG 59 1246246 1246321 CAAGTACAGGAACGTGGAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CR40648 FBgn0085762 FBtr0114212 1 1 1 60 U 9820051 9820069 ATTCTAACTGAATCGGCGG 59 9820090 9820111 TCTTAGGTCCTTGGTTTATCAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17925 FBgn0039967 FBtr0113764 1 1 1 60 U 5531905 5531923 TAGTGGAACACAATGACGG 59 5531863 5531884 GTCTCATCTACTTCATCAGGAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40583 FBgn0085498 FBtr0113908 1 1 1 60 U 4408778 4408796 ATGGAGGAATTGTTCTGGT 58 4408736 4408754 TAGTCAACGCTGTAAACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40339 FBgn0058339 FBtr0113866 1 1 2 70 U 1062795 1062815 TGTATACTCCTGTTCTCTGGA 59 1062845 1062865 TCGTTATCTCCACATAACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40195 FBgn0058195 FBtr0113828 2 1 1 60 U 1047726 1047744 CGAATTGGGAACGATAACG 58 1047684 1047704 ATCTATTTCCTCTGAAGGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089210,FBtr0089215,FBtr0089213 1 3 7 81 4 1079909 1080058 CGTTAATGAAACTGACAACG 57 1079847 1079867 CTCACTGTATGAAGAACTCAC 58 NA Drosophila melanogaster 50 MED26 FBgn0039923 FBtr0089253,FBtr0089254 3 2 2 94 4 802283 803807 AATAGACGATCTGGGAAACAC 59 802209 802230 ACGAGGTACATTCCTTTATCTC 59 NA Drosophila melanogaster 50 bt FBgn0005666 FBtr0089792,FBtr0089791,FBtr0089794 3 3 4 99 4 750190 751409 TTAACTTTCAAGGTGCGAG 57 751472 751490 TTCATGGTGATCAATGTGC 58 NA Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0089130,FBtr0089131 2 2 5 113 4 363634 363652 GGTATGAATCTGGGTGAGG 59 350957 363558 GCCTATTACTTGTGTTTGCA 58 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 3 7 7 85 4 208987 209060 CGGATCATAGACTTACGGA 57 208920 208938 ATCGAAGCATGGTTTAGTC 57 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156 3 9 10 81 4 103362 106346 TCCTAAGATGGGCTTAACTC 58 106387 106408 CATATCTGAACTTAGCATTGGG 58 NA Drosophila melanogaster 50 ci FBgn0004859 FBtr0089178 2 1 1 82 4 72691 72709 AGAATTCCCGGATACATGG 58 72565 72646 CAATTGACATAGGGATCGTG 58 NA Drosophila melanogaster 50 CG1890 FBgn0039869 FBtr0085836 1 1 1 60 3R 27569622 27569640 AAGGAGTACGAGGTACTGG 59 27569664 27569682 AATCTGTCTCGATCAGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12063 FBgn0039851 FBtr0085790 2 1 1 136 3R 27331593 27331611 ATAAGTTCGCCTTCAATGG 57 27331711 27331956 AATTATGAAGCCATAGCCG 57 NA Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634 2 4 5 103 3R 26212311 26213196 AGATTTCAAGTGCTCCCTG 59 26212226 26212244 TGATCTCCTCCTGGATCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15529 FBgn0039748 FBtr0085567 2 1 1 60 3R 25978568 25978588 TTCATAAGGCAAGTGGATAGG 59 25978610 25978628 GCTCCTGAGACTTCTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7943 FBgn0039741 FBtr0085560,FBtr0085559 3 2 2 208 3R 25873516 25873534 TTTCGTACTGCGAGAAGAG 59 25873773 25873791 CTACGTAAATTCGCTTGCA 58 NA DesignNoJunction Drosophila melanogaster 50 Tace FBgn0039734 FBtr0085551,FBtr0085550 3 2 2 126 3R 25826681 25826758 GCATATGGATCACGATAGCT 59 25826846 25826865 AATGTGATAGGTTTCCTCCG 59 NA Drosophila melanogaster 50 CG7911 FBgn0039735 FBtr0085606,FBtr0113308 3 2 2 94 3R 25829774 25829792 AGACCAAATGTCGAGTTCC 59 25829613 25829716 AAGTTCATCTCGACCTTGC 59 NA Nonspecific Drosophila melanogaster 50 CG12877 FBgn0039544 FBtr0100446,FBtr0085223,FBtr0085222 2 3 3 83 3R 23536240 23536258 CGGATTATACAGGAGAGCG 59 23536380 23536400 GCGCAGATAATACTTGATGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG31323 FBgn0051323 FBtr0084988 2 1 1 86 3R 22009675 22009773 TCATTCGAAGTGGCTACTG 59 22009823 22009841 TGTTGTGAAAGGGATCGTC 59 NA Drosophila melanogaster 50 HLHmdelta FBgn0002734 FBtr0084954 2 1 1 60 3R 21823841 21823859 CTCAAGGACATGAAACAGG 58 21823881 21823901 CTAGATTAACTGGTTCTTCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4685 FBgn0039349 FBtr0100571,FBtr0084891,FBtr0100570,FBtr0100569 1 4 4 192 3R 21452227 21452245 GATTCCAGCAATGCAAAGG 59 21451877 21452071 GTTTGTGCCACTTCTTGAG 59 NA Nonspecific Drosophila melanogaster 50 XNP FBgn0039338 FBtr0084837 1 1 2 64 3R 21306131 21306149 TTGTCCTTACTGGTACACC 58 21305987 21306005 CACAAACTGGATCATGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625 3 8 17 93 3R 20521092 20521110 AGGACATTAAGGACGAGAC 58 20521838 20528752 GTGATATCACCTAAGTCATCG 57 NA Drosophila melanogaster 50 CG5746 FBgn0039186 FBtr0084631,FBtr0084630 2 2 2 116 3R 20172702 20172815 ATCAGAACTACAACTCGACG 59 20172605 20172623 GTCCGGTAGCATTGTAGTC 59 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 1 5 6 80 3R 20045369 20045388 ATGAACATCTACAACGAACC 57 20025660 20045326 TGGATTCACGGTAAATGAC 57 NA Drosophila melanogaster 50 CG5524 FBgn0039164 FBtr0084573 3 1 1 81 3R 20015194 20015212 TTGCTGAAAGGACTTTGGA 59 20015070 20015152 GGTTCACTTCATCTGTAAACAC 59 NA Drosophila melanogaster 50 CG31140 FBgn0051140 FBtr0084497,FBtr0113392,FBtr0084498 1 3 5 80 3R 19802103 19802122 CACAAATCGGATAAATCGGA 58 19802162 19802239 CACCTTGATCATCTCTATATCC 57 NA Drosophila melanogaster 50 cnc FBgn0000338 FBtr0084397,FBtr0084394,FBtr0084392,FBtr0084395,FBtr0084396,FBtr0084393,FBtr0084398 1 7 7 60 3R 19014130 19014148 CGACTATACAGTACGACCA 57 19014088 19014107 GGTATGATTTAGTTGCACCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ir FBgn0039061 FBtr0113273,FBtr0084371 2 2 2 161 3R 19009817 19009835 AACAGTCCACTGTACATGC 59 19010018 19010036 CACATTCACGAAACGATGG 59 NA DesignNoJunction Drosophila melanogaster 50 unk FBgn0004395 FBtr0084403,FBtr0084402 1 2 2 143 3R 18981726 18981806 TACAAGTACAGGTCCACTC 57 18981601 18981619 GGTCGACTTGTAGATCTCC 58 NA Drosophila melanogaster 50 how FBgn0017397 FBtr0084177 2 1 3 119 3R 17897748 17900174 TATGCTGATCATAGCGTAGG 58 17900256 17900274 TATCTCAATGAAACCCGCC 59 NA Drosophila melanogaster 50 TotC FBgn0044812 FBtr0083972 3 1 1 61 3R 16698926 16698944 TTATTCGAACCTCCAACGA 58 16698969 16698987 GATATCGAGCAGCTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17838 FBgn0038826 FBtr0113256,FBtr0083960,FBtr0083963,FBtr0083958,FBtr0083961 2 5 8 83 3R 16624057 16624076 CTAGCATAATGTCCTTGACG 58 16624122 16631677 TACCGACTACGTATTCACG 58 NA Drosophila melanogaster 50 CG17267 FBgn0038821 FBtr0083931 3 1 2 131 3R 16563644 16563662 TACGATCCCTACTTTGTGC 59 16563427 16563445 AAGTAGGGTCACCTTTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 TFAM FBgn0038805 FBtr0083948 3 1 2 60 3R 16401898 16401916 AGAAGGAGGTCTACATGCA 59 16401332 16401875 GAAATCGCTTTCCTGTAGAG 58 NA DesignRelaxed Drosophila melanogaster 50 bnl FBgn0014135 FBtr0083795 3 1 1 89 3R 15626212 15653384 GTGAATTCACAATTCTCCAGC 59 15626143 15626161 CGTCCATGCAGAGATACAG 59 NA Drosophila melanogaster 50 CG14304 FBgn0038629 FBtr0083639,FBtr0114497 2 2 2 80 3R 14419608 14419629 CATTACTGTGATCTCAATGGAG 58 14419482 14419568 GCAAGTTAAGGCAATCTGAC 59 NA Drosophila melanogaster 50 fru FBgn0004652 FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642 3 13 13 133 3R 14261181 14261201 ATGTCAGATACTCAGAGATGC 59 14260761 14260780 GTTGTTATCTGTGAGACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 fru FBgn0004652 FBtr0083650 3 1 13 98 3R 14303854 14303875 CGAAAGATACAGATACTTTGCC 59 14261504 14303797 GTGTTGTACCTTGTCATTTCC 59 NA InUTR Drosophila melanogaster 50 CG14313 FBgn0038579 FBtr0083615 1 1 1 80 3R 14017124 14017142 CTTTAGCATCATGCAGCAG 59 14017062 14017080 TAGCTGACGTTGTTCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tinc FBgn0038554 FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769 3 4 4 114 3R 13691908 13692611 CTTCCTAGCAGCTCTTGTC 59 13692689 13692707 GTAAGTGCTGTCCAATGGA 59 NA Drosophila melanogaster 50 CG14897 FBgn0038434 FBtr0083309,FBtr0083310 1 2 2 94 3R 12294591 12294682 CTTCATTGAAGCAATCGCA 59 12294358 12294376 AGTATTTCCTTCGTCGTCC 59 NA Drosophila melanogaster 50 Bin1 FBgn0024491 FBtr0083279 3 1 1 60 3R 12012290 12012309 GTGTCGGAGTATATGTTCGG 59 12012249 12012267 CTTGCCAGGTGTAAATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6006 FBgn0063649 FBtr0113477 3 1 2 155 3R 11995598 11995616 GCAAGTTCACCATTAGTGC 59 11995735 11995820 CGATCTTGTTCAGTAGCGA 59 NA Drosophila melanogaster 50 CG5903 FBgn0038400 FBtr0083281 2 1 1 81 3R 11971673 11971691 CTACAACTTCATCAAGGGC 58 11971610 11971628 GTACTTAAGGTCCTCCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32856 FBgn0052856 FBtr0083239 1 1 1 60 3R 11790613 11790632 CAATCACAACTGTGATGGAG 58 11790572 11790592 ACGAGATCCAGATCTATTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5404 FBgn0038354 FBtr0083165 2 1 1 81 3R 11531852 11531925 TACTAGAGTTATTGGACCGT 57 11531967 11531987 GATGTGGATAGATATCGACAG 57 NA Drosophila melanogaster 50 CG14868 FBgn0038330 FBtr0083109 3 1 1 90 3R 11194491 11194509 GAGGACACCATTCTAAGCC 59 11194361 11194380 TTAGATCGCTTAAGCTCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14864 FBgn0038311 FBtr0110811,FBtr0083128 3 2 2 60 3R 11093343 11093361 TCACTTGTCCAGCTTTCAG 59 11093301 11093319 CTACTGCGGAAATCATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Oscp FBgn0016691 FBtr0083063 2 1 2 113 3R 11092082 11092162 GTGCCCTTAAGTCTTTCCT 59 11092239 11092257 TCATGTCGACGTACTTGTC 59 NA Drosophila melanogaster 50 CG7262 FBgn0038274 FBtr0083008 1 1 1 212 3R 10722102 10722183 TGTTAACAGTGGACTCTTCC 59 10721909 10721927 CTTAACGATCCACCTAGCG 59 NA DesignRelaxed Drosophila melanogaster 50 Neu3 FBgn0051314 FBtr0100189,FBtr0082973 1 2 2 82 3R 10496557 10497104 TATCTGCTTAAGCAGGCAG 59 10496493 10496511 TAGTCGTGACTATGGTCGT 59 NA Drosophila melanogaster 50 spn-B FBgn0003480 FBtr0082933 1 1 1 95 3R 10154601 10154672 ATCACATTGAGGCAGAACC 59 10154728 10154749 CAGAATCAATAATGATCAGGCC 59 NA Drosophila melanogaster 50 CG3153 FBgn0038198 FBtr0082889 3 1 2 189 3R 9916527 9916545 CTAGCTTCCAAGAGCTACG 59 9917116 9917541 CTTCGATTTGGATTTCGGG 58 NA InUTR Drosophila melanogaster 50 Act87E FBgn0000046 FBtr0082786,FBtr0082785 2 2 2 60 3R 9252474 9252492 AGAAGGACTCCTATGTTGG 57 9252515 9252534 TATTTCAGGGTGAGGATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 timeout FBgn0038118 FBtr0082712 1 1 1 83 3R 8983780 8983798 GAAGAATACGAAGAGCAGG 57 8983972 8984699 TTTCGGATTCAGCAATCTG 58 NA Drosophila melanogaster 50 CtBP FBgn0020496 FBtr0082701,FBtr0082702,FBtr0082699,FBtr0082700,FBtr0100161 3 5 5 80 3R 8845523 8845622 AAATACACGAGAAGGTCCT 57 8845665 8845684 TCTCAAGATCCTCCTTTGTC 58 NA Drosophila melanogaster 50 CG5724 FBgn0038082 FBtr0082657 1 1 1 60 3R 8565722 8565741 TATGTTCGATAAGATGGCGG 59 8565764 8565782 GTTGAGATACAGGTCACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GstD6 FBgn0010042 FBtr0082573 3 1 1 60 3R 8203435 8203453 GATGGTATAAGAACGCCCA 59 8203476 8203495 TGAATTCTTGCCAAGTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GstD1 FBgn0001149 FBtr0100410,FBtr0082607 3 2 2 87 3R 8193741 8193759 AATGTGAACAGGTGGTACG 59 8193672 8193691 AGTACTTCTTGAACTCCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 2 15 15 121 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811941 7812031 TTCTTCAGGATGTTGGAGG 58 NA Drosophila melanogaster 50 glo FBgn0037954 FBtr0089917,FBtr0089919 3 2 3 82 3R 7642968 7642986 TTTGTTCAGTTCGAAAGCC 58 7642468 7642923 ATCTCAATATACCTGTGCCC 58 NA Drosophila melanogaster 50 CG6629 FBgn0037860 FBtr0082380 2 1 1 60 3R 6940719 6940739 CACGATACCAGAGATCTATGC 59 6940679 6940698 AGACAGAGCAATGGTTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11870 FBgn0037804 FBtr0090031,FBtr0090030,FBtr0090033,FBtr0090032 1 4 4 94 3R 6117481 6117566 CCACATCTACGAAGTATTTGAG 58 6117620 6117639 TCCTTTCAGACAGATAGTCG 58 NA Drosophila melanogaster 50 CG3934 FBgn0037783 FBtr0082176 3 1 1 146 3R 5886202 5886220 CAAATCGACGATTGTGACG 59 5886444 5886462 ATAGGGTATGGTCACTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 unc-115 FBgn0037733 FBtr0082096,FBtr0082097 1 2 4 102 3R 5515591 5516165 CTTAGCGAGATGCACTACC 59 5515507 5515527 GATAGCTGTAGGTGTAGATGC 59 NA Nonspecific Drosophila melanogaster 50 CG9444 FBgn0037730 FBtr0082099 3 1 1 89 3R 5507628 5507707 GCAGGAACGAATAAAGAATTCC 59 5507560 5507579 AGTAATTCGCCCATCATGAG 59 NA Drosophila melanogaster 50 CG8358 FBgn0037727 FBtr0082081 1 1 1 60 3R 5502275 5502295 GCTGCTCTATAGATTCGATCC 59 5502316 5502335 CGAACAGTAGTTCCTTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11971 FBgn0022347 FBtr0082012 1 1 1 80 3R 4817339 4817415 AAAGCACTTAGAAGAGGGT 58 4817277 4817296 TGAGATTGAAGGTTAACTGG 57 NA Drosophila melanogaster 50 CG11768 FBgn0037625 FBtr0081943 3 1 1 83 3R 4580785 4580803 CAGTTTAAGCAGTCCATCG 58 4580720 4580738 GTTATCGACGGAACTCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33779 FBgn0053779 FBtr0091780 2 1 1 60 3R 4030151 4030171 TTGAGCCGAGTATAAAGTACG 59 4030111 4030129 GGACATGGATGGGTATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17816 FBgn0037525 FBtr0113202,FBtr0081770 2 2 3 185 3R 3697537 3697555 GAGTATACAGATGGACGCC 59 3691467 3694093 CAACTCATGTAGAGTAGCCG 59 NA Drosophila melanogaster 50 Taf1 FBgn0010355 FBtr0081686,FBtr0081684 1 2 3 156 3R 2480377 2480939 CAGATGGCAGATGAATCCA 59 2481058 2481077 TGTAAGGCCCATTATCATCC 59 NA Drosophila melanogaster 50 CG33097 FBgn0053097 FBtr0081735,FBtr0110852 2 2 2 89 3R 2191998 2192077 TCGAATGATTTCCAAGTCGA 59 2191928 2191946 TCTAGTGGTACTAAGGCCC 59 NA Drosophila melanogaster 50 Osi5 FBgn0037413 FBtr0078595 1 1 1 60 3R 2053545 2053564 GTCTTGCGGAATTTAAATCG 57 2053584 2053605 CTATCTCCAATCCTCTAATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10979 FBgn0037379 FBtr0078631 1 1 1 80 3R 1621009 1621112 GGATACACAGATCAGAATTCCA 59 1621151 1621171 GCGTAGCATATGTTCAATGTC 59 NA Drosophila melanogaster 50 plx FBgn0004879 FBtr0078718 2 1 2 92 3R 1533897 1534232 ATGGATAACATACCCAAGCA 58 1534287 1534305 CACTAGGAACACCATCGTC 59 NA Drosophila melanogaster 50 kkv FBgn0001311 FBtr0078798,FBtr0078800,FBtr0078799 3 3 3 99 3R 1204859 1204877 GTAAGAATTCGGTGATGGC 58 1204709 1204796 TTGTTGTTAATCGGTGCTC 58 NA DesignRelaxed Drosophila melanogaster 50 kkv FBgn0001311 FBtr0078798,FBtr0078800,FBtr0078799 1 3 3 99 3R 1204859 1204877 GTAAGAATTCGGTGATGGC 58 1204709 1204796 TTGTTGTTAATCGGTGCTC 58 NA Drosophila melanogaster 50 CG1116 FBgn0037297 FBtr0078775,FBtr0078774,FBtr0078776 2 3 3 210 3R 1045991 1046009 CAAGATCACCATTGCTACG 58 1046182 1046266 GGTTACGTTCTTAAGGTGGT 59 NA DesignRelaxed Drosophila melanogaster 50 corto FBgn0010313 FBtr0078844 2 1 1 81 3R 911778 911796 TGTGTTACCGAAACGAGAG 59 911715 911733 GTCGTAGTTGGCATAACAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14657 FBgn0037282 FBtr0078875 3 1 1 291 3R 645557 645575 AGACAGCGAAGATGATGAG 59 645228 645247 TGTTAATTCCGTATCCAGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31530 FBgn0051530 FBtr0078882 3 1 1 87 3R 578309 578534 TAATCTATCTGTGGCAGTGG 58 578241 578259 TCCAGCAAGATCTTCTTGG 59 NA Drosophila melanogaster 50 snRNA:U5:63BC FBgn0003938 FBtr0073017 1 1 1 60 3L 3090821 3090840 GTCGAATAAATCTTTCGCCT 58 3090862 3090881 GACTCATTAGAGTGTTCCTC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41453 FBgn0084016 FBtr0111174 3 1 1 132 3L 23081059 23081080 GGTTGGAGAACAAGAATATGAG 58 23082203 23082223 GAGAATAAGATTTCGATCGGC 58 NA DesignNoJunction Drosophila melanogaster 50 Ddx1 FBgn0015075 FBtr0078492 2 1 1 69 3L 22258367 22258385 AAGTTTCTGATTTGCACGG 58 22258417 22258508 CATTTATCATAAACGGCAGC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG32447 FBgn0052447 FBtr0078460,FBtr0078461 1 2 2 183 3L 21687566 21687584 TTCTGCTATTATCCTCCCG 58 21686807 21687419 GTCGTATAAACATGCCTGG 58 NA Drosophila melanogaster 50 CG11307 FBgn0037106 FBtr0078420,FBtr0078421 3 2 2 168 3L 21612249 21612328 CAATTTCAGAAACAGCCGA 58 21612460 21612478 CTTAAGGACGACTTGACGT 59 NA Drosophila melanogaster 50 Smc5 FBgn0052438 FBtr0078374,FBtr0078373 2 2 3 196 3L 21565422 21565496 TAAAGCAGCAACCAGAGAC 59 21565656 21565674 AGTCATGTATTGCCTCTCG 59 NA Drosophila melanogaster 50 Pc FBgn0003042 FBtr0078405 3 1 1 101 3L 21308450 21308468 GTTACGGCGTAAATTCCAC 59 21299260 21299278 ATGTACAATCAATACCGGC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG34261 FBgn0085290 FBtr0112456,FBtr0112455 3 2 2 100 3L 21190184 21190203 CAGTTGTTGAATTTGCAGAG 57 21190265 21190284 CTGGATTTCTTGGTGATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13253 FBgn0037015 FBtr0113182,FBtr0113183 2 2 2 64 3L 20706706 20706793 CAAGAACCTAGAGGACTGC 59 20706660 20706678 CATCGAATTCCTGTTCGAG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG14187 FBgn0036938 FBtr0074868 2 1 1 60 3L 20105625 20105644 AGGACTTCTTCATGTACCTG 58 20105584 20105602 AATCCTGACATCGTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp305a1 FBgn0036910 FBtr0074925 2 1 1 118 3L 19806259 19806278 GCGATTCTAATTGGTTTCGT 58 19805024 19805279 TCCTTACGGAACTGTAATGTG 59 NA Drosophila melanogaster 50 CG8533 FBgn0036907 FBtr0074877,FBtr0114601,FBtr0074878,FBtr0074876 2 4 4 170 3L 19794992 19795010 CATCTTCGACTACAAGCCT 59 19795205 19795275 TATGGTTCAGATGTGTCCAC 59 NA Drosophila melanogaster 50 CG32212 FBgn0052212 FBtr0074932 1 1 1 108 3L 19481130 19481148 CCTTGTCCTGATAACCGTC 59 19481219 19481238 AGCAGAGTAGTCTAGAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075004 3 1 11 81 3L 19301392 19301410 AATGTCACTTTGACAGTGC 58 19301267 19301350 CGATATTGGGTTCATAGTACAG 58 NA Drosophila melanogaster 50 nes FBgn0026630 FBtr0075021,FBtr0075020,FBtr0075019 2 3 3 86 3L 19251647 19251665 ATACATGGTTGTGAGCACC 59 19251406 19251424 GAGTTGTTCAGAATGTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18363 FBgn0036808 FBtr0075090 3 1 1 82 3L 18690917 18690935 TGGTATACCAACGGATCTG 58 18690789 18690871 CATGCTTATAGTTGCGTCG 59 NA Drosophila melanogaster 50 CG11905 FBgn0036678 FBtr0075303,FBtr0075302,FBtr0075306 2 3 10 122 3L 16928316 16928334 ACTATTCACCAGAACCTCG 58 16926098 16926397 GCTGCTTCTGAATTTCGAC 59 NA InUTR Drosophila melanogaster 50 CG11905 FBgn0036678 FBtr0075303,FBtr0075302,FBtr0075306 3 3 10 122 3L 16928316 16928335 AACTATTCACCAGAACCTCG 59 16926099 16926398 CTGCTTCTGAATTTCGACG 59 NA InUTR Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0075441 3 1 6 61 3L 16070861 16070879 AAGAAGAGCTATGGAACGC 59 16070904 16071932 GCTTCTGCAATAGCTTGAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG7656 FBgn0036516 FBtr0075592,FBtr0075593 1 2 3 168 3L 15579686 15580114 GGACTCACAGGACAATGAG 59 15579536 15579554 ATCGTAGAAGTTGGCATCC 59 NA Drosophila melanogaster 50 gdl-ORF39 FBgn0028377 FBtr0091756 1 1 1 60 3L 15503296 15503315 TCGGATACGAAGATTATCGA 57 15503711 15503729 GAAGTGTGGATTGTTGGTC 58 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 ome FBgn0002997 FBtr0112816 1 1 2 90 3L 14733240 14737299 CGGTTCAAGAATCTAATGCA 58 14737352 14737370 ATAGAGCAACCGCTATGAC 59 NA Drosophila melanogaster 50 Hsc70Cb FBgn0026418 FBtr0075771,FBtr0075772,FBtr0075773 1 3 3 199 3L 14032909 14032927 ATGATATCGACGTCTCGTC 58 14033087 14033172 GTTAAAGACCTGCTCAATAAGC 59 NA Drosophila melanogaster 50 CG32118 FBgn0052118 FBtr0075889 3 1 1 60 3L 13091355 13091375 CCATTGATGTGATACAACTCG 59 13091396 13091415 AGAAGACTACTAGGGTTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11279 FBgn0036342 FBtr0075887 3 1 1 83 3L 13040387 13040405 GTCCGTTATTTCGAAGTCG 58 13040452 13040470 TTGCTCAACTGGATGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10638 FBgn0036290 FBtr0089322 1 1 2 92 3L 12494036 12494055 GAAGGCATTATAGGCAAGGT 59 12493889 12493981 TATGTCCCACAGCTTTGTG 59 NA Drosophila melanogaster 50 CG32103 FBgn0052103 FBtr0075982,FBtr0075984 2 2 3 80 3L 12406596 12406614 CAGGATCGATATCCACGAC 59 12405543 12406552 TGCTGAAGGAATTTCTCCG 59 NA Drosophila melanogaster 50 CG14128 FBgn0036218 FBtr0076036 3 1 1 60 3L 11873495 11873515 CATACAAAGAACCACTACCCA 59 11873536 11873555 TTACAAGTTAGTCCTTCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scyl FBgn0041094 FBtr0076169,FBtr0076168 2 2 2 60 3L 11247414 11247433 CAGTTCATGAAGAGTTTGGC 59 11247455 11247474 TCTTGGTGATCGTATACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18490 FBgn0036149 FBtr0076167,FBtr0076166 1 2 2 154 3L 11219659 11219744 GATGCGTCAGTAAACAAGC 59 11219862 11219880 ACGTCATCGTTGATCTGTC 59 NA Drosophila melanogaster 50 As FBgn0061469 FBtr0076186 3 1 1 95 3L 11200361 11200379 CTTCGAAATGGTTACGGAC 58 11200222 11200302 ACAAAGTCGAATTCACGAC 58 NA Drosophila melanogaster 50 l(3)01239 FBgn0010741 FBtr0076238 3 1 1 60 3L 11067090 11067110 ACTGTGATAGAAACTCTGGAG 58 11067050 11067068 CACCAATTTGACGAAAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aps FBgn0036111 FBtr0076250,FBtr0076251,FBtr0076252 3 3 3 82 3L 10889924 10889944 TACGACAAGGATGGATTTAGG 59 10889708 10889881 GAGGTTACCAAGAGTACCTC 58 NA Drosophila melanogaster 50 CG32063 FBgn0045770 FBtr0076286,FBtr0076287 3 2 2 60 3L 10460034 10460055 CCGATCATTACAAAGTATTGGC 59 10460073 10460094 TTCGGCATAGTCCATATTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ilp3 FBgn0044050 FBtr0076373 2 1 1 60 3L 9794879 9794898 CGTGAACTTCAATCAGATCG 59 9794838 9794856 ACTCAACAGTCTTTCCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or67a FBgn0036009 FBtr0076375 3 1 1 80 3L 9524083 9524163 AGAGGTTAATAGATGCTAGCG 59 9524205 9524223 TCTTGAATCGTTTGTCGGA 59 NA Drosophila melanogaster 50 CG3654 FBgn0036004 FBtr0076468 2 1 1 75 3L 9478089 9478169 ATTTCAGGGACATTCACGA 58 9478207 9478226 TCATAACCCAAGGCAAAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 PGRP-LC FBgn0035976 FBtr0089491 3 1 3 89 3L 9338168 9338187 GTAAGATCAGAGATGACGAC 57 9340754 9340772 TCAGTATTAGTCCACCACC 57 NA DesignNoJunction Drosophila melanogaster 50 Cp19 FBgn0000358 FBtr0076573 1 1 1 75 3L 8723493 8723511 GAGTACAGCAAGGTGATCC 59 8723550 8723568 CATACTGGTTCTCTGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6282 FBgn0035914 FBtr0076636,FBtr0076637 3 2 2 104 3L 8608156 8608332 TACAAAGATCAACTGGAGTACC 59 8608396 8608415 GATGAACTTCAAAGCACTGG 59 NA Drosophila melanogaster 50 CG6673 FBgn0035906 FBtr0076654 3 1 2 113 3L 8514869 8514887 TGAAGATCAATACGGAGCA 58 8514715 8514733 CATCCAAAGCTGTCTTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7422 FBgn0035815 FBtr0110885 3 1 1 102 3L 7726857 7726878 GTTCAATATGTTCCTCAAGAGC 59 7726715 7726794 ATTGAGTTGAATGCCCTCC 59 NA Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112696,FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112697,FBtr0112702,FBtr0112698 3 8 10 92 3L 7703513 7703532 GATACTCGTGGAAAGGTCAG 59 7703375 7703459 ATGGTCATTATCGAGAAGCA 58 NA Drosophila melanogaster 50 CG16998 FBgn0035795 FBtr0076829 3 1 1 60 3L 7532756 7532775 GATTACATCACTCTGGTTGG 57 7532715 7532735 GGAGTAGCTATCTGGATACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33277 FBgn0053277 FBtr0089852 2 1 1 86 3L 7438804 7438822 CAGTTCACCAATCCATTCG 58 7438869 7441175 CATGTTGACATCTAATGTCTGG 59 NA Drosophila melanogaster 50 CG14823 FBgn0035734 FBtr0076908,FBtr0076906,FBtr0076907,FBtr0076905 3 4 4 61 3L 7059522 7059543 CAAATACAGTGAGGATGATGTG 59 7059565 7059583 CATATTCCTGATGCTCCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 loj FBgn0061492 FBtr0077053,FBtr0077052,FBtr0077051 2 3 3 124 3L 6088573 6088752 TACGTGTCCTTTAGTGTGG 58 6088839 6088858 GATACCTGATCCGTGTAGTC 59 NA Drosophila melanogaster 50 shep FBgn0052423 FBtr0077172,FBtr0077175,FBtr0077173,FBtr0077174 2 4 4 80 3L 5156244 5156458 AGGTAGATGATCAGACTTCG 58 5156183 5156202 GTTTGTATGAGGTTACTCCC 57 NA Drosophila melanogaster 50 CG14959 FBgn0035427 FBtr0073050 3 1 3 167 3L 3267257 3267275 CTTCTATGCCGACATGGAG 59 3267543 3267622 AGGTAGAACCATTTGGGTG 59 NA Drosophila melanogaster 50 CG32280 FBgn0052280 FBtr0073030,FBtr0073031,FBtr0073032 1 3 3 124 3L 3168252 3168339 ATTGCCCTATTTGGTTGCT 59 3168426 3168445 CAATCCTATCGACGGTATCG 59 NA InUTR Drosophila melanogaster 50 CG1244 FBgn0035357 FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933 3 6 6 91 3L 2640505 2640584 GTCTGTGGAAGGATGTACC 59 2640639 2640657 CACTTGTAGGACAGGTGAG 59 NA Drosophila melanogaster 50 CG32301 FBgn0052301 FBtr0072875 3 1 1 91 3L 2245328 2245347 TCCTTTCCAGATTCCAAGAG 59 2245400 2245470 CATAGCCATTTGAAACACCA 58 NA Drosophila melanogaster 50 CG5691 FBgn0035297 FBtr0072854 1 1 1 97 3L 1962563 1962652 GCTAAATAGCCACTTCAATCTG 59 1962487 1962505 TTTCCTGAGATCTCTTCGC 59 NA Drosophila melanogaster 50 CG13937 FBgn0035287 FBtr0072862 2 1 3 108 3L 1881209 1881228 CTATTTGCTCATCTTCACGG 58 1878551 1881139 ATTAAAGGCCTCGAATCCTC 59 NA Drosophila melanogaster 50 CG12022 FBgn0035276 FBtr0072782 1 1 1 101 3L 1804303 1804321 AAATACCTCCCAACAGTCG 59 1804447 1804465 AACTTAACGTACAGCTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG7971 FBgn0035253 FBtr0072807,FBtr0072806,FBtr0100219 1 3 5 60 3L 1664543 1664562 TGGAATTGGAGGACATTCTC 59 1663992 1664010 ACCTGCGACTTAATTTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 metl FBgn0035247 FBtr0072813,FBtr0072814 3 2 2 82 3L 1638389 1638408 ACTCACAGGACATTATTGTG 57 1638326 1638345 ATAGCAATTGTCCAATACCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scf FBgn0025682 FBtr0089942,FBtr0089940,FBtr0089941 2 3 3 60 3L 1299622 1299641 ATGGTTATTTGAACGAGGAG 57 1299664 1299682 GAATGATCGAAGTCATGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ptpmeg FBgn0035133 FBtr0072545,FBtr0072542,FBtr0072544,FBtr0072543 1 4 4 80 3L 354438 354510 TATCACCATATGACTGCACC 59 354553 354571 CCATGTTTACGTAGTTGGC 58 NA Drosophila melanogaster 50 mri FBgn0035107 FBtr0072481,FBtr0072480 1 2 3 129 3L 201355 201445 GGAGTATTGTCAGACCGTG 59 201538 201556 GTATCCCTCTATGCCACAG 58 NA Drosophila melanogaster 50 CG7047 FBgn0035103 FBtr0072535,FBtr0072534,FBtr0072536 1 3 3 135 3L 177250 177268 ATAAAGTGCAGAGTGTCCC 59 177067 177152 AATACTCGATGGTCTCAGTG 58 NA Drosophila melanogaster 50 snoRNA:Me28S-U1130 FBgn0086022 FBtr0114298 1 1 1 66 2R 14786962 14786980 TGAGGGAAATTCATGAGGG 58 14787010 14787028 AAATGAGTTTCCTGCTGGA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33436 FBgn0053436 FBtr0086428 1 1 1 62 2R 15623110 15623128 AATACATCGGTTCTCGTCC 59 15623066 15623084 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Tina-1 FBgn0035083 FBtr0100389,FBtr0072411 1 2 2 60 2R 20828519 20828538 GGAGAACCTACTTAGTCTGC 59 20828478 20828496 GTATGGATGGGTGGTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MAN1 FBgn0034962 FBtr0072166,FBtr0072167 1 2 2 60 2R 19922795 19922813 GGAAGTTCAACTATCCCAC 57 19922836 19922855 GTTAGCCTTTCTTTCCTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Chi FBgn0013764 FBtr0072192,FBtr0072191 3 2 2 81 2R 19920384 19920402 TCTTTGAGCTAAACAAGCG 58 19920321 19920339 AAGAACTCCGTGGTAAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Unc-89 FBgn0053519 FBtr0113464 2 1 2 81 2R 19900368 19900444 AAGTCAAGATGCTTTGTGC 58 19900305 19900326 TGAACTCTAGTATATCGATGGG 58 NA Drosophila melanogaster 50 CG16787 FBgn0034940 FBtr0072207 3 1 1 75 2R 19844214 19844232 CTACACAGTGCGGATAAGG 59 19844157 19844176 CTTGTACTTCCAGAACTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 thoc5 FBgn0034939 FBtr0072147 1 1 1 81 2R 19843448 19843468 GAAATGCCTCTATGGATTCTG 58 19843511 19843585 ACTCCATCATCTTGATCGC 59 NA Drosophila melanogaster 50 CG9850 FBgn0034903 FBtr0100329 1 1 2 122 2R 19647292 19648384 CATAACCAAACTCGATATGTGC 59 19646068 19646086 CTGTTCACCTTCTCCAGTC 59 NA Drosophila melanogaster 50 CG11300 FBgn0034901 FBtr0072090 2 1 1 78 2R 19639867 19639887 CAACCAGAGTAATCAGAATGG 58 19639926 19639945 TTACAATAGACGACGGTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 chrw FBgn0015372 FBtr0072120 3 1 1 117 2R 19409666 19409684 CATAAAGAACACGCTGCAC 59 19408475 19409585 AGCTGTATCCCAGATTTGC 59 NA Drosophila melanogaster 50 CG4294 FBgn0034742 FBtr0071941 1 1 1 80 2R 18489503 18489522 AGCAGAAACGACATAAACTC 58 18489310 18489460 CGTCGATTAACCTGTAGTC 57 NA Drosophila melanogaster 50 Gp150 FBgn0013272 FBtr0071814,FBtr0071816,FBtr0071813,FBtr0071815 2 4 4 82 2R 18213224 18213297 AAGTCCAAGAGCAAATCCA 59 18213341 18213361 TCGTCGTAGTCATATTGAGAG 58 NA Drosophila melanogaster 50 CG30281 FBgn0050281 FBtr0071760 3 1 1 81 2R 18002685 18002704 TAAAGATCAGGCTGGAAGAG 58 18002745 18002842 GATGGGTTAATTGTCTCATGAC 59 NA Drosophila melanogaster 50 CG34370 FBgn0085399 FBtr0112595 1 1 1 81 2R 17892259 17892277 AGACATTCATCAGCGAGAC 59 17888295 17892215 TCGAATGTGAAGTAGGTCTG 59 NA Drosophila melanogaster 50 CG30290 FBgn0050290 FBtr0071672 1 1 1 91 2R 17579804 17579823 CATAGATCTAGGCAAGTGGG 59 17579877 17579952 TATTATCGCAAATCCCGGT 58 NA Drosophila melanogaster 50 CG34203 FBgn0085232 FBtr0112396 3 1 1 73 2R 17168922 17168943 GATTCAACAACTAAGTGATGCC 59 17168870 17168889 TTCTAAGGGTTTCACTGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pu FBgn0003162 FBtr0071578,FBtr0071580,FBtr0071579 1 3 3 81 2R 17069023 17069041 TTCTACGGCAAAGTTTCCA 59 17069086 17069163 ATATTTCGACAATGCGTGC 59 NA Drosophila melanogaster 50 CG4050 FBgn0020312 FBtr0071637,FBtr0071638 3 2 2 60 2R 17012577 17012595 TATCAGCATGAGGAGTGAC 58 17012475 17012494 CTTCATAAGAATGTCGCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15226 FBgn0034550 FBtr0071564 1 1 1 116 2R 16677206 16677224 ATTTGGATGATGTCGAGCA 59 16676571 16676589 TTAGAGCCGAGACTATGCT 59 NA DesignNoJunction Drosophila melanogaster 50 bl FBgn0015907 FBtr0086221,FBtr0086220 1 2 4 90 2R 16483146 16483164 TTCGCATACTGATTCCGAG 59 16483311 16485063 GTGGCTTTATACTGAGTCCT 58 NA Drosophila melanogaster 50 Fak56D FBgn0020440 FBtr0086542,FBtr0086543,FBtr0114605,FBtr0086544 3 4 5 84 2R 15322745 15322828 TGGTATTAATACCGCTGAGAG 59 15322681 15322700 CCAAATCGTGAACTCTAGGT 59 NA Drosophila melanogaster 50 CG34045 FBgn0054045 FBtr0100100 2 1 1 118 2R 15220299 15220317 TGCACCAGGAAATACTGTG 59 15222469 15222488 TCTGGCTTATTGCCATACAG 59 NA DesignNoJunction Drosophila melanogaster 50 endoB FBgn0034433 FBtr0086558,FBtr0086559 1 2 4 80 2R 15196010 15196085 CCAATGAGGTGATCTTCGT 59 15195948 15195966 GACCCTTCAATAGACCCTG 59 NA Drosophila melanogaster 50 CG15067 FBgn0034331 FBtr0086728 3 1 1 110 2R 14273055 14273073 AAGAGCCTGACGTTATTGG 59 14272908 14272926 AGTCGTTTGATCATGGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sbb FBgn0010575 FBtr0086767,FBtr0086766,FBtr0086765 2 3 3 179 2R 14175232 14175640 CAAATACGAAACAACTAGCTGG 59 14175074 14175092 ACTTCTCAATATCCGCGTC 59 NA Drosophila melanogaster 50 CG5084 FBgn0034288 FBtr0086804 1 1 1 226 2R 13906667 13906685 CATCTACCTGAACACCACC 59 13906875 13906953 TCTTGTCGAAAGTGGACAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6355 FBgn0028741 FBtr0089554,FBtr0089555 2 2 2 120 2R 13663153 13663233 ATCTGGTTCAGATGTCCTG 58 13663051 13663069 GAATAGTCCATGACGAGGT 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14478 FBgn0028953 FBtr0086921,FBtr0086922 2 2 2 60 2R 13351185 13351203 GTAGGTTCAATCTGGACGG 59 13351227 13351245 TAGTTGCGTAAATCGTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k01209 FBgn0022029 FBtr0086914,FBtr0086912,FBtr0086913,FBtr0086915 1 4 4 92 2R 13312000 13312086 CGGTTAAGAAGGGACATCTC 59 13312140 13312159 GTAATTGCAATAGGAGGGCT 59 NA Drosophila melanogaster 50 CG15609 FBgn0034180 FBtr0114627,FBtr0114625 1 2 6 103 2R 12896440 12897016 CAATCATTGTGAGACCGAG 58 12896355 12896373 TATTTAGCTGCATCTGTCG 57 NA Drosophila melanogaster 50 Menl-1 FBgn0029154 FBtr0100116,FBtr0100115,FBtr0100114 3 3 3 92 2R 12305201 12305279 ATTCTCAGATGGAAAGGCT 58 12305127 12305145 TTGTTAGCTTGACCAGGAG 59 NA Nonspecific Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087272,FBtr0087270,FBtr0087273,FBtr0087271 2 4 7 89 2R 11848682 11848827 CCAATTCGAGACACATATTCTC 58 11848614 11848632 GATCCATTGGATTTCGGGA 59 NA Drosophila melanogaster 50 sli FBgn0003425 FBtr0087304,FBtr0087302,FBtr0112831 3 3 5 138 2R 11773781 11773799 GACCGTGATATACGAGACG 59 11772978 11773607 ATTGTTGGAGATGTCCAGTC 59 NA Drosophila melanogaster 50 fus FBgn0023441 FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343 2 4 6 110 2R 11555363 11559507 CAACTGGACAGATCGTAGG 59 11555271 11555290 TGTTATTGGTGACACTCGAG 59 NA Drosophila melanogaster 50 CG12424 FBgn0033987 FBtr0087409,FBtr0087410,FBtr0087411 2 3 3 101 2R 10865415 10865739 TGGTGCTCATTAAGGTTCG 59 10865804 10865822 TGTAATGGCTGAAGGTCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12858 FBgn0033958 FBtr0087476 1 1 1 113 2R 10631362 10631380 CATGAACTACGGCATTGAG 58 10631205 10631287 TCTGGATATAGATTGGGATCC 57 NA Drosophila melanogaster 50 Tfb1 FBgn0033929 FBtr0087548,FBtr0087549,FBtr0087550 1 3 3 104 2R 10251345 10251363 TAACCAGCGATGAGTTCTG 59 10251489 10251507 TTATGTCAGCCAGAAAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6337 FBgn0033873 FBtr0087646 3 1 1 60 2R 9722520 9722539 TACTAACCATCGACAGTGGA 59 9722479 9722500 GTTTGAAAGTCCACTAGATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6145 FBgn0033853 FBtr0087687,FBtr0087685,FBtr0087686 2 3 3 60 2R 9426355 9426492 AGCTAGTGACCTTTAAAGATGG 59 9426316 9426336 CAGACGATAAAGTCAATCCGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG4734 FBgn0033826 FBtr0087754 2 1 1 127 2R 9185121 9185140 GATAGTACCAACGATCTGGA 58 9184825 9185032 GGATTGTTGCTCGATATGAC 58 NA Drosophila melanogaster 50 CG4734 FBgn0033826 FBtr0087754 3 1 1 127 2R 9185122 9185141 CGATAGTACCAACGATCTGG 59 9184826 9185033 GATTGTTGCTCGATATGACC 58 NA Drosophila melanogaster 50 sca FBgn0003326 FBtr0087855,FBtr0087856 2 2 2 60 2R 8687283 8687503 AATGAAGAATAAGCTCACCC 57 8687526 8687544 GACATTCTGATGATGTGGT 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG33012 FBgn0053012 FBtr0087909 2 1 2 142 2R 8255912 8256259 TAATGAAGGCAAGTCTGGA 58 8256365 8256383 ATTGGATATACTGCGGACC 58 NA Drosophila melanogaster 50 CG11883 FBgn0033538 FBtr0088284,FBtr0113063,FBtr0088283 2 3 3 91 2R 6527407 6527426 CAATCATACAAGTTGTGCGT 59 6527480 6527561 TCATCATCCATCAGCACAG 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 1 26 26 80 2R 6421013 6421095 AGTCCCTACTTTGCTACCT 59 6420951 6420970 CTCTTGGTACTTGACATCCT 58 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 3 9 9 198 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349188 6349206 CTTAGTACAGTCCACAGCC 59 NA DesignRelaxed Drosophila melanogaster 50 Mef2 FBgn0011656 FBtr0088443,FBtr0088447 1 2 6 105 2R 5805515 5805533 AATCTTAGCGTACTGAGCC 59 5805022 5805446 CATACTTATCGTGCCCTGG 59 NA Drosophila melanogaster 50 CG30010 FBgn0050010 FBtr0088374 3 1 1 70 2R 5751948 5751966 GGAGAACGTTTAGAGTTGC 58 5751999 5752018 TTACAATCCTCGTTCATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Prosalpha7 FBgn0023175 FBtr0089997,FBtr0089998 1 2 2 143 2R 5734692 5734764 TTTCCATCATTCTCGCCTC 59 5734400 5734588 CTTTGTAGATGATTTCACCAGC 59 NA Drosophila melanogaster 50 CG1814 FBgn0033426 FBtr0088523,FBtr0088521,FBtr0088522 1 3 3 80 2R 5468497 5468576 AATCTACTACGAGGGTTCG 58 5468620 5468638 TGATCTCCGAAATAGAGCA 57 NA Drosophila melanogaster 50 CG13744 FBgn0033363 FBtr0088666 2 1 1 184 2R 4902865 4902885 GATAAATGTCGAGATCAAGGC 58 4902064 4902145 CGTTATGATAAATTCCTGGCTG 59 NA Drosophila melanogaster 50 Dmn FBgn0021825 FBtr0088641 2 1 1 128 2R 4780404 4780422 GAACTATACGACATCGCGA 59 4780579 4780598 AATCTCTGCGATGATCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14752 FBgn0033307 FBtr0088691 3 1 1 95 2R 4478001 4478019 TTATCAGTCACCACCTGAC 58 4478077 4478528 TGAATACTTTCAGGACGGAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Pabp2 FBgn0005648 FBtr0088786,FBtr0088785 1 2 2 182 2R 4020283 4020454 GGCGTCAAATAAAGGTAATGTC 59 4020662 4020680 AAGGAGCGTAGTAATTGGC 59 NA Drosophila melanogaster 50 CG12824 FBgn0033222 FBtr0088830,FBtr0113050 1 2 2 105 2R 3678248 3678269 CTACTTAATGGGTTACTCATCC 57 3678388 3678406 ATAGAATGCCATTCCGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1602 FBgn0033186 FBtr0088960 2 1 1 86 2R 3405555 3405573 CTAGCAACGATGAAGAAGG 57 3405430 3405448 CTATCAGGTCGGTAGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088988,FBtr0088989,FBtr0088990 1 3 9 91 2R 3362872 3362952 AATAAATGCAGGAGATCGG 57 3361301 3361319 GTTGTGATGTGAAGATCCC 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111090,FBtr0089020 3 2 60 60 2R 3249249 3249267 GAGAAACCCGATTAAGTGC 58 3238787 3249225 TTAAATCCCACAGGCTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111087,FBtr0111059,FBtr0111074 1 3 60 93 2R 3244596 3249235 TTGGTCATCACAGAACCTG 59 3244521 3244539 TTAAGGCTTGACCCATAGG 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111079 3 1 60 92 2R 3245786 3245804 AAGAGTTCGAACAATGGAG 57 3236472 3245731 TTGTACCATCTGTTAATGGG 57 NA Drosophila melanogaster 50 CG9454 FBgn0033112 FBtr0086194 1 1 1 60 2R 2767918 2767939 CCTATATGTTATGAAGGGTCTC 57 2767879 2767898 CTTCTGCTCTAGTATGTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3271 FBgn0033088 FBtr0086118,FBtr0086119 3 2 2 108 2R 2561684 2561772 ATATTCGCAGTGACGAGTC 59 2561842 2561862 AGATGATGGAATAGGCAAAGG 59 NA Drosophila melanogaster 50 CG32838 FBgn0052838 FBtr0086066 2 1 1 62 2R 1342303 1342321 TTGAAGGATACTGTTGCGG 59 1342347 1342365 GTTATCTGCACGAAATCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6t2Psi FBgn0041336 FBtr0081529 3 1 1 60 2L 21284091 21284110 AATGTGTTGAATGTGGAGAC 58 21284050 21284068 TTACGCTCGTATAGCTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17018 FBgn0039972 FBtr0085957 1 1 3 103 2L 22325838 22363439 TTTCTATAGATGCTGGCCG 59 22363506 22363524 GCGATAATGTCGATAGCTG 58 NA Drosophila melanogaster 50 CG11630 FBgn0032964 FBtr0085909 3 1 1 60 2L 21782661 21782679 TAACAATCGTCGTCTGGTC 59 21782619 21782640 GTTAGGTAAGTTCTGGAGAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr39a FBgn0041244 FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510 1 4 4 89 2L 21297292 21297310 AAACAGCAAAGATGCTGAC 58 21297471 21297489 TCTGTCGAAGGTTCTTGAG 58 NA DesignNoJunction Drosophila melanogaster 50 Hr39 FBgn0010229 FBtr0081481,FBtr0081480,FBtr0081479 3 3 4 154 2L 21256008 21256026 AAGATAACCCTATCGCAGG 58 21257042 21257115 AACTCTGTCGTATCTGACTG 58 NA Drosophila melanogaster 50 CG34136 FBgn0083972 FBtr0110944 1 1 1 68 2L 21097208 21097226 CTGTCGTTTCCCTACTGTG 59 21097258 21097276 CATTCACAATTGGCACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9264 FBgn0032911 FBtr0081463 3 1 2 82 2L 21080465 21080483 ATCCTATTCAGTGGCTGTG 59 21080526 21080610 CTAGGTATCAGCAGAATGAGTC 59 NA Drosophila melanogaster 50 CG40169 FBgn0058169 FBtr0100179 3 1 2 213 2L 20238606 20238626 CGCCTTTAAGTCTTCTTTGTC 59 20245418 20245436 GTGTACCAATTGTGCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10462 FBgn0032815 FBtr0100351,FBtr0100352,FBtr0081325 3 3 3 92 2L 19733222 19733240 GACAAACGTTTCCGAACTC 59 19733055 19733167 GTCTAACGAGCATATCTTGC 58 NA Drosophila melanogaster 50 CG10263 FBgn0032812 FBtr0081264,FBtr0081263 2 2 3 159 2L 19581472 19581490 ATCAATCACAGACATGTGG 57 19581331 19581349 TTTAGGAGCCATAGCTACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10026 FBgn0032785 FBtr0081237,FBtr0081236,FBtr0081238 3 3 3 89 2L 19457157 19457234 GCTCTACTAGTGACCTCCA 59 19457287 19457305 AAATATCTTGAATGCCGCG 58 NA Drosophila melanogaster 50 l(2)37Ce FBgn0086446 FBtr0081157 2 1 1 62 2L 19132626 19132644 ATAGAGGAATATGCCACCG 58 19132670 19132688 ATTGTTGACATCCCAAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31792 FBgn0051792 FBtr0081137 2 1 1 93 2L 18998785 18998806 GGACACCTTTATTCAGTTTACC 58 18998860 18998932 AGCGATTCCAATCTCTTGG 59 NA Drosophila melanogaster 50 CG15167 FBgn0032709 FBtr0081101 3 1 1 274 2L 18740440 18740460 CCAGAGATCTACCTATTAGCG 58 18740696 18740714 TTCCACTTCGAGAATCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31746 FBgn0051746 FBtr0081060 2 1 1 88 2L 18193058 18200634 ATATCAGCACAGTTCTGGG 59 18192988 18193006 ATTACATCGATCTGCTCCA 58 NA Drosophila melanogaster 50 CG5758 FBgn0032666 FBtr0081036,FBtr0081035,FBtr0081037 1 3 3 80 2L 18128000 18128021 CAATCAGGTGTTCATTATCTCC 58 18128062 18128144 TTATCCTTGTGCATCTGGT 58 NA Drosophila melanogaster 50 CG5043 FBgn0032636 FBtr0080980 1 1 1 81 2L 17435198 17435216 CTTTGTTGACCAGTTACGC 59 17435261 17435339 AAGCAATTTGCTGAACTGC 59 NA Nonspecific Drosophila melanogaster 50 CG4930 FBgn0028515 FBtr0080824 1 1 1 61 2L 16258274 16258292 ATCCCGTTAAGGATTACCA 57 16258317 16258335 ATCCACGATTTCGTCTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mol FBgn0086711 FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015 1 5 5 81 2L 14984076 14984208 CTAGTCATATTAATCACTCGCC 58 14984016 14984034 GTGAGAAGGCTTTGTATGG 58 NA Drosophila melanogaster 50 HDC02577 FBgn0086609 FBtr0080673 2 1 1 60 2L 14802507 14802526 ATTAGTAGCAGTTCTCTGGA 57 14802549 14802567 CAATTGTCTCCAATTCCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 smi35A FBgn0016930 FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289 3 5 5 91 2L 14195795 14195814 CGGATGGATCTCATAATGTC 57 14189224 14195741 CAGGTTCAAGCTCATTAGC 58 NA Drosophila melanogaster 50 CG15638 FBgn0028943 FBtr0080516 1 1 1 138 2L 13535729 13535747 GATTATAATCCACCGCCCA 59 13535609 13535627 AATTGGAGGTTCCTTTGGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG33305 FBgn0032351 FBtr0080221 3 1 1 60 2L 11159922 11159940 ATCGCGATGAATACAGTCC 59 11159880 11159899 ATGGCATTAAGCATTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7456 FBgn0032258 FBtr0080038 2 1 1 80 2L 10487109 10487128 TCATGAAGAACTCCGATCTG 59 10486988 10487069 CCTCCATGAAATATCTTTCCAG 58 NA Drosophila melanogaster 50 CG4946 FBgn0032203 FBtr0079983 3 1 1 146 2L 10265920 10265940 GATATGAGTACTTATGGGCCG 59 10266104 10266209 GAAATGGAACATCCGTGGA 59 NA Drosophila melanogaster 50 chico FBgn0024248 FBtr0080088 2 1 1 82 2L 10244842 10244918 ATAACTATGGTTTCGGCAGAG 59 10244780 10244798 GTACGTTTGATTGCTGGAC 59 NA Drosophila melanogaster 50 CG13126 FBgn0032168 FBtr0079892 2 1 1 144 2L 9952872 9952890 AATCCGATAGCTCAAGCTC 59 9952687 9952764 GAATAGGCAGACTTTCCGT 59 NA Drosophila melanogaster 50 CG13125 FBgn0032163 FBtr0079899,FBtr0079898 1 2 2 133 2L 9923290 9923373 CAGTTGAGGATTCTACCCT 57 9923175 9923194 AATATCCGTCATATTGTCGG 57 NA Drosophila melanogaster 50 CG9525 FBgn0032080 FBtr0079786 2 1 1 60 2L 8961802 8961821 GGCAGAGGATCTACAATCAG 59 8961761 8961779 TGGTGCATATGTCTTAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34398 FBgn0085427 FBtr0112648,FBtr0112649 2 2 2 86 2L 8927410 8927428 CATAGATAGTGCCGACGTC 59 8927478 8927561 CTGGTGATTCCACTATCCC 59 NA Drosophila melanogaster 50 grk FBgn0001137 FBtr0079708 3 1 1 82 2L 8431930 8431949 AACACAGTCTTCCATTCCTG 59 8431732 8431885 ATGTAGTCACCATTCCAGC 59 NA Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079620,FBtr0079621 1 2 4 89 2L 8245213 8252236 AGATACCAGCTCCTAATGTC 58 8245143 8245161 TAATCGTATAAGCCGGAGC 59 NA Drosophila melanogaster 50 CG8668 FBgn0031988 FBtr0079576 3 1 1 80 2L 8131848 8131866 CAATGTTATGGCGGATGAG 58 8131910 8131988 CTACTGTTGATGTTGCCTG 58 NA Nonspecific Drosophila melanogaster 50 Cka FBgn0044323 FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538 3 4 4 100 2L 8036254 8036272 ACATCAATGGAAACGAGAG 57 8036394 8036413 GTCCACGATTATTTCATCGA 57 NA DesignNoJunction Drosophila melanogaster 50 pes FBgn0031969 FBtr0079553,FBtr0114550,FBtr0079552 3 3 3 119 2L 7988318 7988403 CCGGGTATTACCTTGTATGAG 59 7988219 7988237 GACAATTAGCGGAACAAGC 59 NA Drosophila melanogaster 50 CG7115 FBgn0027515 FBtr0079523,FBtr0079524 2 2 2 126 2L 7823093 7823467 GAGGATAGGTTTATTATCGAGGAG 59 7823552 7823570 AGATGTTCTTCACCAGCAC 59 NA Drosophila melanogaster 50 CG31904 FBgn0051904 FBtr0079502,FBtr0079501 3 2 2 284 2L 7735484 7735566 ATTTAAAGGCATTGGCTACG 58 7735106 7735124 GTGTAGGACAGTCCATGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9526 FBgn0031815 FBtr0079258,FBtr0079259 2 2 2 86 2L 6457037 6457055 CTACGATGTGGAATTGCAG 58 6457102 6457347 TAATAGGGACCTGTAAGAACTC 58 NA Drosophila melanogaster 50 CG31639 FBgn0051639 FBtr0079208,FBtr0079207 1 2 2 112 2L 6154021 6154656 AATTTAATACCAGCTCGGAC 57 6153928 6153946 GATTTCCATCTGCCTTTCC 58 NA Nonspecific, InUTR Drosophila melanogaster 50 Vm26Aa FBgn0003979 FBtr0079239 1 1 1 249 2L 5960241 5960259 ATGAAATCCTTCGTGTGCA 59 5960010 5960028 TGAACAGGTAGTTCTTGGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Hel25E FBgn0014189 FBtr0079123,FBtr0079125,FBtr0079124 1 3 3 82 2L 5539759 5539779 CTTAACGAAGTACAGGATCGT 59 5539635 5539717 CGTCCCTCAATGTATGTAGAG 59 NA Drosophila melanogaster 50 Cg25C FBgn0000299 FBtr0079002,FBtr0079001,FBtr0079003 2 3 3 106 2L 5034886 5034904 GAGACATTGGTCCAAGAGG 59 5034973 5035074 TCCAATAAGACCTTGACGTC 59 NA Drosophila melanogaster 50 mRpL24 FBgn0031651 FBtr0079058 1 1 1 82 2L 4944855 4944935 AACCAATTGAGGACTGGAG 59 4944791 4944809 GACAATTCCCTGCTTTCCT 59 NA Drosophila melanogaster 50 Rbp9 FBgn0010263 FBtr0077636,FBtr0077635 1 2 7 153 2L 2955495 2961223 TTATCCATCACAACAGCGT 59 2961340 2961358 CTGTTGGTCACATTGTTGG 59 NA Drosophila melanogaster 50 lilli FBgn0041111 FBtr0077634,FBtr0077633,FBtr0077632 3 3 3 292 2L 2947157 2947175 GACATTCCGTCGAGTAGTG 59 2947431 2947622 TTGTTGACATCCTTCTCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG2843 FBgn0031452 FBtr0077712 1 1 1 118 2L 2745435 2745453 GAGTGCTGAGCAATAATGG 58 2745597 2745615 GGACTTGTCGATCTTACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7337 FBgn0031374 FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012 1 5 5 129 2L 1937464 1937482 CACAATACGGAGAATGGGA 59 1937575 1938517 TATGGCCTACATTCTCCAG 58 NA Drosophila melanogaster 50 CG17660 FBgn0031356 FBtr0077912 2 1 1 82 2L 1708395 1708472 CGACTGAGGAGGAATATGG 58 1708331 1708349 ATGACGGAAGCGATAACAG 59 NA Drosophila melanogaster 50 chinmo FBgn0086758 FBtr0077879,FBtr0077877,FBtr0077880,FBtr0077878 1 4 4 94 2L 1690675 1690693 GTTTCTCGTCTAACTTGGC 58 1690751 1694237 TTTGAATACTACGCCATCG 57 NA Drosophila melanogaster 50 GABA-B-R3 FBgn0031275 FBtr0078001 3 1 2 106 2L 756070 756676 ATAGTGGACTGAACAATCAC 57 756745 756763 GATACTGATCCTGGAACCA 58 NA Drosophila melanogaster 50 Ptth FBgn0013323 FBtr0078073 2 1 1 82 2L 576134 576154 ACGATTTCTATGAGGATCTGG 59 576014 576091 GAGCTCATTCGTAACTTTGC 59 NA Drosophila melanogaster 50 nAcRbeta-21C FBgn0031261 FBtr0078064,FBtr0078065 2 2 2 80 2L 545556 545825 CTGAATCTCCGATGGAGAG 58 545869 545887 GGACTTCAAAGTGATCTGC 58 NA Drosophila melanogaster 50 CG3625 FBgn0031245 FBtr0078136,FBtr0078135,FBtr0113009 1 3 3 88 2L 284780 284798 TATCGACAGGGAGCTAGTC 59 284173 284191 AAACCACTATGTTGGTGTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG17078 FBgn0086855 FBtr0078138 3 1 1 80 2L 275244 275329 GGCTCTAGTCAATTCACCC 59 275182 275201 ATCTGGCCTTCAATGTAGAC 59 NA Drosophila melanogaster 50 CG3436 FBgn0031229 FBtr0078120,FBtr0078119 1 2 2 67 2L 156467 156485 AGAAGGACATGAGGGAGAG 59 156514 156534 CAGAAGAAAGCAATAACTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34330 FBgn0085359 FBtr0112532 3 1 1 83 X 18962657 18962675 CTTCCAAGTGAAACAGGAG 57 18962592 18962610 AACTGCCTAATCGACACAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074573,FBtr0074575,FBtr0074574,FBtr0074571,FBtr0074570 2 5 6 80 X 18286506 18286591 TCATCAAACATCACCAGGT 58 18286444 18286463 TATTCAGGACATAGACACGC 59 NA Drosophila melanogaster 50 CG15059 FBgn0030905 FBtr0074584 3 1 2 73 X 18153248 18153266 AATGGGTTGTGAAATGGGT 59 18153130 18153212 GATTGTTCTTTCGGGATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arpc3B FBgn0065032 FBtr0074410 3 1 2 176 X 16999010 16999524 GAAGTTAAGTCGGAGGTGG 59 16998852 16998870 GTATATTCCGTTCAGCGGA 59 NA Drosophila melanogaster 50 CG6340 FBgn0030648 FBtr0074039 2 1 4 283 X 15377318 15377337 CAACAATAACTATGGCAGCG 59 15379284 15379365 CCTTGCTGTGATTCTTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9514 FBgn0030592 FBtr0073980 1 1 1 60 X 14782507 14789809 ATGGATTGGAAGTATCGCA 58 14782465 14782483 GTTTGTCCTTCATTGCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9517 FBgn0030591 FBtr0073981 1 1 2 80 X 14771623 14771641 CGGCATGAATTTCTATCGC 59 14771332 14771580 TCATACTGACGACGTATGAC 58 NA Drosophila melanogaster 50 CG12539 FBgn0030586 FBtr0073987 1 1 1 121 X 14738707 14738725 ACTTGCTCATCTTCACGAC 59 14738548 14738622 ATCTCTGGGTACATTCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11071 FBgn0030532 FBtr0073829 1 1 1 63 X 13749149 13749283 TAGTACAAACAAGCGGTCG 59 13749104 13749122 ATGATGGTGTGGATAGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4332 FBgn0030456 FBtr0073726 1 1 1 60 X 13049970 13049988 CGGACACCAATGTATACCT 58 13050012 13050109 AAGAGCATATGGATGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1837 FBgn0030329 FBtr0073551 1 1 1 94 X 11612715 11612733 TTGACCTTACCGAAGACAC 59 11612791 11612870 CAAACGCTGACAATGACTG 59 NA DesignNoJunction Drosophila melanogaster 50 Met FBgn0002723 FBtr0073521 3 1 1 109 X 11512179 11512267 TATATGAAGGATGAGGTGCG 59 11512339 11512357 TAGTCACTGTTGCAATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11727 FBgn0030299 FBtr0073546,FBtr0073547 1 2 2 87 X 11331116 11331134 ATCATACTTGGAGGTCTCG 58 11330817 11331065 GGATACGTTATTCTCCTGC 57 NA Drosophila melanogaster 50 Ant2 FBgn0025111 FBtr0073426,FBtr0073425 3 2 2 209 X 10674143 10674238 TACAAATCGGTATTCCTCGG 59 10673656 10673677 GATCACCTTCATTAGACAATCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12637 FBgn0030224 FBtr0071504 1 1 1 60 X 10566719 10566738 CATTTCGAGGTGATTCTCCA 59 10566678 10566698 GAATAATAGCCGGATACACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15252 FBgn0030167 FBtr0071426,FBtr0112970 1 2 2 141 X 9873643 9873809 ACTTTCTGAGGCTCATGAC 59 9873403 9873538 AACATTTGGCGACTTTACG 59 NA Drosophila melanogaster 50 CG18262 FBgn0030012 FBtr0071158 1 1 1 78 X 8048120 8048138 CAATGTCCATGCTGTATCG 58 8048180 8048198 CTTCTTCCGTTGAAACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33669 FBgn0053669 FBtr0091648 1 1 1 78 X 6294003 6294080 TTCTTGACTACTCCGAAGC 59 6293943 6293961 TTCTTAGAACGGGAAAGCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 rux FBgn0003302 FBtr0070889 2 1 1 67 X 5931002 5931110 AAGAACATAAGGAGACGCC 59 5930953 5930971 TATGGTCCCATCATCTACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ec FBgn0000542 FBtr0070606 2 1 3 155 X 3730818 3730836 AAACATCGGCAATCAATGC 59 3735438 3745002 AAAGTTCCTTTAGAGCGCA 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG14422 FBgn0029645 FBtr0070555 3 1 1 60 X 2837947 2837965 AACTTCCACAAACCCTACC 59 2837989 2838007 GTCGACCAAATTGTTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13762 FBgn0040333 FBtr0070444 1 1 1 77 X 2517530 2517628 GGTGATTGACTACCTCTCG 59 2517471 2517489 TTGTACAGCGTAAAGTCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41038 FBgn0085559 FBtr0113972 1 1 1 60 U 7691141 7691159 TCAAATGACAGAAGTGCCA 59 7691099 7691118 TGCTTGTGAACTTGATTGAG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-3186 FBgn0086662 FBtr0091697 3 1 1 62 3R 1423820 1423838 CTTGTTCAACTTGCAGCTG 59 1423776 1423796 CATCCAAGAGTCAGTATACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or98P FBgn0067407 FBtr0085225 1 1 1 63 3R 23670943 23671077 TATATCGTGGCTAAGCTGG 58 23671104 23671122 ATCGCTCAGAAATGTTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hdc FBgn0010113 FBtr0085620,FBtr0085621,FBtr0085619 1 3 3 81 3R 26184088 26184106 ATTCGATCGCTATCCACTG 59 26184150 26185703 GTATTTAACCTCGATGCAGC 59 NA Drosophila melanogaster 50 Cnx99A FBgn0015622 FBtr0110909,FBtr0085438,FBtr0110908,FBtr0085437 2 4 4 129 3R 25143653 25143673 TATACCATCATGTTTGGACCG 59 25143220 25143562 CTTCCAAACGGTTCTTTGG 59 NA Drosophila melanogaster 50 CG14259 FBgn0039483 FBtr0085104 1 1 1 75 3R 22920754 22920772 CAATCTGACTGACCTGGTG 59 22920810 22920953 AAAGTCTTTCTTGCTCACAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31081 FBgn0051081 FBtr0085033 2 1 1 76 3R 22460650 22460723 TGTTTCTTACGTTGTTGGC 58 22460763 22460781 CACAGGTCCTCCATAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CHKov2 FBgn0039328 FBtr0084849 3 1 1 109 3R 21156227 21156245 AGCACCAGAAATTACTCGA 58 21156086 21156155 ATAGTCGCTTATGAGAACGA 58 NA Drosophila melanogaster 50 CG31457 FBgn0051457 FBtr0084405 3 1 1 79 3R 18952756 18952833 TTACTGGACGATGAACCAG 58 18952695 18952713 ATGTTGATCTCAACCATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31178 FBgn0064912 FBtr0084138 2 1 1 61 3R 17699966 17700050 GTGATGCGAATAGCAATGC 59 17700074 17700093 CGATTGATAGTGGATAACGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mvl FBgn0011672 FBtr0089521,FBtr0089522,FBtr0089523 1 3 3 80 3R 16882559 16883305 GCTATGAGTACATTGTATCAGC 58 16882500 16882518 AATTGCAGTTAGAGCACCA 59 NA Drosophila melanogaster 50 CG17267 FBgn0038821 FBtr0114503,FBtr0083931 2 2 2 64 3R 16564042 16564327 ATTGGCTCCAGAAACTATCC 59 16563997 16564015 CTTCTGTATCCACCACGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7702 FBgn0038638 FBtr0083664 2 1 2 300 3R 14495417 14496875 ACTATTCTATACTGCGAGGC 58 14498585 14498603 AATGTCCTCATGTTGGCTC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 l(3)05822 FBgn0010877 FBtr0083596,FBtr0083595 1 2 2 64 3R 14115518 14115536 TTGTTTGTATCACTTCCCG 57 14115414 14115490 TAACCAATTCGTTCTCCTG 57 NA DesignRelaxed Drosophila melanogaster 50 CG7131 FBgn0038598 FBtr0083598 1 1 2 107 3R 14113252 14113327 AAAGCTGTCCTATCAACCG 59 14113163 14113181 TGTTTCTGAGTGGTCATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7655 FBgn0038536 FBtr0083479 1 1 1 146 3R 13508837 13508915 TTATTTGATCGTCAACTGGC 58 13509024 13509042 AGATCCATCACCAAACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31190 FBgn0051190 FBtr0089444,FBtr0113397,FBtr0089443,FBtr0113398 2 4 4 80 3R 13311060 13312991 TGAATGTTTACGGACCTCC 59 13310998 13311019 GACAGTGCACAATTATATCCTC 58 NA Drosophila melanogaster 50 kuk FBgn0038476 FBtr0083398,FBtr0083397 3 2 2 60 3R 12908691 12908709 TGGCAAAGATAAGTCACAG 57 12908731 12908751 AGATTTCTCTACCTTCTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4520 FBgn0038355 FBtr0083167 1 1 1 112 3R 11571116 11571134 GTGATGAGATCGGTATCCG 59 11571210 11571285 TAATGGGAGTAACGTGCTG 59 NA Drosophila melanogaster 50 btsz FBgn0053555 FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530 3 5 5 111 3R 10634167 10634187 GCAGTACAACTATAAGCTGAG 58 10634011 10634096 TAGATACACCTTAACGTAGGG 58 NA Drosophila melanogaster 50 Ipp FBgn0016672 FBtr0082865 1 1 1 230 3R 9784908 9784926 AATTTCACCAACCAACTGG 58 9785120 9785422 GTCAATTGGATCGATCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9611 FBgn0028487 FBtr0112937,FBtr0082846,FBtr0112939,FBtr0082847,FBtr0112938 1 5 5 83 3R 9521483 9521501 TTGAGCACATTGGATTTGC 59 9521355 9521439 CTCCAAGTGAGTTATGTTTGTC 59 NA Drosophila melanogaster 50 CG10126 FBgn0038088 FBtr0082686,FBtr0082687 1 2 2 60 3R 8681482 8681557 TGGATGGAAAGATAACCCG 59 8681440 8681458 ATTGAGGCACTAATGGTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14711 FBgn0037922 FBtr0082416 1 1 1 87 3R 7449944 7449962 ATATCTACTCCAAGCGAGC 58 7450013 7450093 GATTTGCTGCATATTTCGC 58 NA Nonspecific Drosophila melanogaster 50 CG14693 FBgn0037837 FBtr0082300,FBtr0082301 3 2 2 127 3R 6637918 6638520 GACACCCACATTTGAAAGC 59 6637809 6637828 GAAGTATCAGGCATTGAACC 58 NA DesignNoJunction Drosophila melanogaster 50 Osi5 FBgn0037413 FBtr0078595 3 1 1 77 3R 2053672 2053690 TATCCTTCTATCTGCGCAC 58 2053731 2054174 CTTCTGAAACTTGGGACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32448 FBgn0052448 FBtr0078449 1 1 1 129 3L 21821272 21821290 TTAGTGGAGAAGACGACGA 59 21821095 21821179 TAATCTTGTTCGGCTTGGT 59 NA Drosophila melanogaster 50 Aef1 FBgn0005694 FBtr0078349 2 1 3 127 3L 21426793 21428134 AATGGAAAGGCACTAGCAG 59 21428225 21428305 GGGATTAGGTAGTCTCGGT 59 NA InUTR Drosophila melanogaster 50 CG32425 FBgn0052425 FBtr0078205,FBtr0078202,FBtr0078203 1 3 5 164 3L 20505333 20505351 ATCATCAATGATGAGCGCT 59 20505479 20505632 GATCACTGGTAGCTTTCCC 59 NA Drosophila melanogaster 50 CG4306 FBgn0036787 FBtr0075117 3 1 1 81 3L 18455624 18455820 AGTCAAGAAGGCGTTAGTC 59 18455561 18455580 CAGGAGTTGATTCAGATTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TpnC73F FBgn0010424 FBtr0089586 1 1 2 180 3L 17039367 17039458 TCGATGAAGATCTTACACCC 58 17039665 17039683 TTACTGTCCTCATCGACCT 59 NA DesignNoJunction Drosophila melanogaster 50 Eig71Ek FBgn0014851 FBtr0075575 2 1 1 121 3L 15654549 15654570 CAGAATAGGACGATTTGATGAG 58 15654652 15654726 AAATCAGAAGACAGGTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17177 FBgn0036440 FBtr0075710 1 1 1 80 3L 14692403 14692785 ATCGGGAGATAATTCACCG 58 14692341 14692359 CAGTGAACTCACCTTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10222 FBgn0036356 FBtr0075861 3 1 1 60 3L 13404968 13404986 CGATCTGCTAAAGAAGCAC 58 13404926 13404945 GACGTCCGTATAATAGTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14126 FBgn0036223 FBtr0076068 1 1 1 78 3L 11929751 11930073 GCAACTATATCTGCAGTGC 58 11929691 11929709 CTGGATAGAAAGTGGAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6038 FBgn0036198 FBtr0076123 3 1 1 232 3L 11704243 11704333 CTAATTCACGAGGGCTCTG 59 11703973 11703991 CATCCTTCGTATTTGTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33267 FBgn0053267 FBtr0089845 1 1 1 145 3L 11557925 11565512 AACTACAGATGATGCCACC 59 11565621 11565639 TGCGCTTATAGTGGATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34237 FBgn0085266 FBtr0112431 2 1 1 111 3L 10618183 10618201 GGTCTTCGATGTCTTCCTC 59 10618029 10618108 AAACTCAATTGCCATGGTC 58 NA Nonspecific Drosophila melanogaster 50 nudE FBgn0036059 FBtr0114600,FBtr0113158,FBtr0076344,FBtr0113159 2 4 4 100 3L 9893399 9893533 CTCTCAAGCTCAAGTTGGA 59 9893597 9893615 CAGGTACACCTTCATGGTG 59 NA Drosophila melanogaster 50 CG5194 FBgn0035955 FBtr0076548 3 1 1 117 3L 9002145 9002164 GATTCTGACAAGAAGGATCC 57 9001997 9002015 ATGGTGGTATGGGAATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5660 FBgn0035942 FBtr0076560 2 1 1 264 3L 8955232 8955309 CTTGGAAACAACCAAACCT 58 8954986 8955004 GCTAATCTCATTGCGACTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6683 FBgn0035902 FBtr0076655 3 1 1 111 3L 8507734 8507810 AAATTCAGAAGCTAGTGCC 57 8507641 8507659 CAGAAGACTCCAATCGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nmo FBgn0011817 FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758 2 6 6 142 3L 8040250 8040352 GTCTTCGATCCGGATAAGC 59 8040457 8040476 AAATCAGCCGTATACTGACG 59 NA Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112696,FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112697,FBtr0112702,FBtr0112698 3 8 10 92 3L 7703513 7703532 GATACTCGTGGAAAGGTCAG 59 7703375 7703459 ATGGTCATTATCGAGAAGCA 58 NA Drosophila melanogaster 50 Lcp65Ag2 FBgn0020637 FBtr0077059 3 1 1 165 3L 6126391 6126409 CTGAACGACATTGGAACTG 58 6126244 6126262 GCAATTTCACTTAGGCCAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Jon65Aiv FBgn0035664 FBtr0077040 1 1 1 101 3L 6032456 6032474 GACTTTCCCTGAAGCTGAG 59 6032539 6032634 GAACTCCATCGGTACAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr64Aa FBgn0035510 FBtr0073254 3 1 1 197 3L 4209066 4209084 GAAACTGATCCTCGTCCTG 59 4208560 4208905 CCATCATGAACATCGTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10359 FBgn0035452 FBtr0114608,FBtr0073136 2 2 2 109 3L 3613109 3613127 ACTACAAGGAGCTGATGAC 58 3613197 3613761 CAGCTGATCCAATTTCTTATCG 59 NA Drosophila melanogaster 50 CG14959 FBgn0035427 FBtr0073050,FBtr0073049 1 2 3 81 3L 3267275 3267433 GTACAATTGCCAGATCTTTCAC 59 3267474 3267493 GTTAAAGCTCGTCTCATTGG 58 NA Drosophila melanogaster 50 CG32486 FBgn0052486 FBtr0073004 1 1 1 80 3L 3057882 3057900 ATTTCTAAGAGCACTGCGT 59 3057756 3057838 GTTGCAGAATTGACACTCG 59 NA Nonspecific Drosophila melanogaster 50 CG1271 FBgn0035392 FBtr0072989,FBtr0072986,FBtr0072988,FBtr0072987 1 4 4 63 3L 3053679 3053697 GTTTGTACGATCCGTTCAC 58 3053724 3053799 GAATTGATGCCGAATAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32485 FBgn0052485 FBtr0072985 3 1 1 107 3L 3050601 3050619 GAAATTGATTGTGGAGGCG 59 3050689 3051015 TTTAGAATGGCCTGAAATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sk2 FBgn0052484 FBtr0072984 2 1 1 62 3L 3048155 3048652 CCATTGTTACAACGAACCA 58 3048678 3048696 CTGATTACGGTCAGAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32320 FBgn0052320 FBtr0113433 2 1 1 85 3L 1400093 1400113 CCAGTACTATCAGATCATGGG 59 1400157 1400230 GTCTCATTGAGCTTATCTTCAC 58 NA Drosophila melanogaster 50 Trh FBgn0035187 FBtr0072638 3 1 1 181 3L 1191849 1191867 AGTACATTCGACACTCCTC 58 1191394 1191471 AAAGAAGTAGAGCGTAGCC 59 NA Drosophila melanogaster 50 CG2811 FBgn0035082 FBtr0072412 1 1 1 62 2R 20827628 20827647 TACCCGGACTACTATGATCG 59 20827527 20827606 CTGAATGGTTTCATTCTGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34045 FBgn0054045 FBtr0100100 3 1 1 105 2R 15222293 15222484 GATGCTGTATGGCAATAAGC 59 15222551 15222570 ATTTGTCGAGTTCCTAACCC 59 NA DesignNoJunction Drosophila melanogaster 50 sec6 FBgn0034367 FBtr0086709 3 1 1 94 2R 14513727 14513745 GTTGTGAAGTCCCTTTGTG 58 14513801 14513886 AGATAGCTAGAAAGTCCTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18107 FBgn0034330 FBtr0086663 2 1 1 71 2R 14272195 14272278 CAATGCTATTCCGTTGTCAC 59 14272312 14272330 CGAACATTGCAATTCACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL18A FBgn0010409 FBtr0086947 3 1 1 156 2R 13434483 13434923 CAAGGGATTGTTGAAGGAG 58 13434345 13434364 CTTGAACTTCTTCAGTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Khc-73 FBgn0019968 FBtr0087356,FBtr0087357 2 2 2 81 2R 11413463 11413540 TGGTCTATTATCTGAAGGATCG 58 11413403 11413423 AGACCGGAAAGTTGTATATCC 59 NA Drosophila melanogaster 50 CG10265 FBgn0033990 FBtr0087422 2 1 2 88 2R 10881076 10881095 ATACATAGTAACGCCGATCG 59 10880924 10881026 AGATGTGAATCTCCTGTCTG 58 NA Drosophila melanogaster 50 CG17388 FBgn0033937 FBtr0087489 3 1 1 100 2R 10329934 10329952 AATCACAGCAACAAAGCTG 59 10330013 10330034 GTGTTGTAGTTCTTCTGATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17760 FBgn0033756 FBtr0110824 1 1 1 81 2R 8514601 8514619 ATTCATGGCCATACAGTCG 59 8514663 8514750 GGCAAGTTTACTATGCTCCT 59 NA Drosophila melanogaster 50 CG30369 FBgn0050369 FBtr0088795 1 1 1 129 2R 4146973 4146991 GTTTGCATCAAAGGAGGAC 59 4147084 4147102 GAATCCAGATGATGGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2070 FBgn0033203 FBtr0088921 3 1 1 88 2R 3550377 3550395 GAACTGTTCCGCAATACAC 59 3550499 3550520 CTAGCCGTCTTTATGAATATCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG30158 FBgn0050158 FBtr0086165 1 1 1 119 2R 2793755 2793773 AAGAGCTCTATTGTGAAGC 57 2793856 2797446 GATGTCCACCTTTAGTGTG 57 NA Drosophila melanogaster 50 CG15130 FBgn0032860 FBtr0081366 3 1 1 63 2L 20424459 20424477 CATAGCTGTAGCTTCGGTC 59 20424414 20424432 GCATACCATAATCACTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10949 FBgn0032858 FBtr0081367 2 1 1 77 2L 20416089 20416164 GAGGAACTTTGCTACAACC 58 20416030 20416048 CTGGTTGATCTGATGACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ddc FBgn0000422 FBtr0081168 2 1 3 128 2L 19119265 19119283 TATGCACGTCTGATAACCA 58 19118128 19119173 CCTTTCGCGTATATTCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33928 FBgn0053928 FBtr0091932 3 1 1 86 2L 17436046 17436125 ACCATTCTTGTCCCTATACAC 59 17435980 17436001 GCGGTACGTATTTAGTAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15141 FBgn0032635 FBtr0080979 1 1 1 60 2L 17411358 17411376 AAATGATTTGCGATGGCTG 59 17411400 17411418 GCTAATCCAGTGTAGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tehao FBgn0026760 FBtr0080502 2 1 1 73 2L 13436778 13437924 CTGACTAACTTGTCGAGCA 59 13437961 13437979 AGCGAGTTCTTGTTCAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6565 FBgn0032513 FBtr0080468 3 1 1 80 2L 13375132 13375212 CCTCCTTATACTCATACAAGGT 58 13375253 13375271 CCAAATCCGTTTGAACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aub FBgn0000146 FBtr0112793,FBtr0080165 1 2 2 80 2L 10999568 10999587 AGGCCATAATGATCATTCCC 59 10999440 10999525 CCCTCAACGTCCTAAAGTC 59 NA Drosophila melanogaster 50 CG33129 FBgn0053129 FBtr0080169 3 1 4 108 2L 10968579 10968708 GCTTCTGAAAGCTATAAACGAC 59 10968492 10968511 CAGTTCTTCGTTCAGATTCG 58 NA Drosophila melanogaster 50 CG15828 FBgn0032136 FBtr0079844,FBtr0079843 1 2 2 80 2L 9643116 9643136 CTCGACTACAAGACACTATCC 59 9643175 9643267 CGATTCCAATAGGTGATTTCTG 59 NA Drosophila melanogaster 50 Trx-2 FBgn0040070 FBtr0079839,FBtr0079840 1 2 2 203 2L 9613532 9615311 AAAGATAAGGCCGATCTCG 59 9615559 9615579 GGAGATGTTGTATTCCATTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4389 FBgn0028479 FBtr0079859,FBtr0079857,FBtr0079858 1 3 3 81 2L 9575428 9575513 GGTAAACTTCGCGTAAATCG 59 9575366 9575384 TCTTCACAAAGTCGGTGTC 59 NA Drosophila melanogaster 50 CG15439 FBgn0031606 FBtr0077455 3 1 1 71 2L 4450817 4450835 AAGATCTGACTAAGTCGCC 58 4450355 4450782 CGGCAGGAACATTAATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10031 FBgn0031563 FBtr0077544 1 1 1 90 2L 3698758 3698841 AGAGACTGGTACCAGATCC 59 3698686 3698707 GAATCCTTGTTGTAGTAGAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16713 FBgn0031560 FBtr0077547 1 1 1 167 2L 3695219 3695292 ATGCAATCTGTGGTCTACC 59 3695070 3695088 CTTCACAGATTTCCCTCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 drm FBgn0024244 FBtr0077531,FBtr0077530 3 2 2 79 2L 3545739 3545757 TGAGATCACCTATTCGTGC 59 3545800 3546741 ACTGACTACATCTGTGCTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG2862 FBgn0031459 FBtr0077718,FBtr0077719 1 2 2 63 2L 2770395 2770472 GATAAATGCGTTGCCTTCC 59 2770499 2770517 GAGGAATCACGAGGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:S7:64D FBgn0011986 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snmRNA:184 FBgn0065102 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG14613 FBgn0031188 FBtr0077367 2 1 1 64 X 21873005 21873023 CTGTGCTATAAAGTGGCCA 59 21872796 21872814 ATGGATACGGTTGTACACC 59 NA DesignNoJunction Drosophila melanogaster 50 sol FBgn0003464 FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676 1 4 4 80 X 21228148 21228166 AGAGCTACAATGTGGTGTC 59 21228209 21228297 CGATGATTACTTGTCTCTGC 58 NA Drosophila melanogaster 50 CG1486 FBgn0031174 FBtr0077191,FBtr0077190 2 2 2 91 X 21197131 21197149 CAATGCTTCCTACTTCGAC 58 21197258 21197279 GGTGTTCAATTACCTCAAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32494 FBgn0052494 FBtr0074506 2 1 1 77 X 17894605 17894623 ACAATATTTGTCGCCACAG 58 17894664 17894682 TTTACTGCCTAGTCGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 1 7 7 80 X 15717652 15717670 TATCACCGGCATCTATTCG 59 15717712 15717802 TTGCCGTATATCAACAGTCTC 59 NA Drosophila melanogaster 50 CkIIbeta FBgn0000259 FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559 2 5 6 163 X 11689032 11689147 TTGTTCCAAGGCTATATGGA 58 11689687 11689705 TTGTATTCGTGCGTATGTG 58 NA InUTR Drosophila melanogaster 50 CG34408 FBgn0085437 FBtr0114584,FBtr0114585 1 2 4 99 X 10120044 10120555 ACTGAGTTCGGATAATGCC 59 10120618 10120636 CAGCGAAACATTCAGATCC 58 NA Drosophila melanogaster 50 bys FBgn0010292 FBtr0071090 1 1 1 236 X 7796327 7796409 TCAGTTTGAATGATGGCCA 59 7796607 7796627 CGATTTCCTCGATCTTTAGTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG11148 FBgn0039936 FBtr0089250,FBtr0089249 2 2 3 185 4 886491 886567 TTGGCAATAACTCTCGTCC 59 886265 886342 CGGCCTTTGATATAACCGA 59 NA Drosophila melanogaster 50 Pur-alpha FBgn0022361 FBtr0089995,FBtr0089994,FBtr0089993,FBtr0089996 2 4 4 116 4 581196 581348 TAAAGGTTGCTGAGATTGG 57 581427 581446 CTAGAGAAGCGTAGTAATCG 57 NA Drosophila melanogaster 50 RpL32 FBgn0002626 FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555 1 4 5 60 3R 25871413 25871431 CGGATCGATATGCTAAGCT 59 25871309 25871327 ACTCTGTTGTCGATACCCT 59 NA DesignNoJunction Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113387,FBtr0084928,FBtr0113388,FBtr0084927 2 4 7 80 3R 21535235 21539274 GAATTGGAATGTGGCAATAGG 59 21535175 21535194 CTTGAAGCGATTCTGAATGC 59 NA Drosophila melanogaster 50 Aats-met FBgn0027083 FBtr0082895 1 1 1 112 3R 10084721 10084741 GTCTGGTTAGATGCTTTAGTC 58 10084562 10084580 AACTTGAGGATGTCCTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG3153 FBgn0038198 FBtr0082889,FBtr0082888 2 2 2 77 3R 9917057 9917075 TTATTTGTGATCTTCGCCG 58 9917116 9917541 CTTCGATTTGGATTTCGGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 nocturnin FBgn0037872 FBtr0113220,FBtr0113218,FBtr0113219 2 3 3 94 3R 7032965 7033088 ATCCTATCACAAACTCTCGG 58 7033145 7033163 TGGACAATCAGGTACTTGC 59 NA Drosophila melanogaster 50 CG14691 FBgn0037829 FBtr0082313 1 1 2 80 3R 6579819 6579899 GAATCTAAGCTGGAATTGGT 57 6579758 6579776 GTATGTGATTCGAGACCAC 57 NA Drosophila melanogaster 50 sle FBgn0037810 FBtr0082231,FBtr0082232 1 2 2 155 3R 6162872 6162952 AAAGAAAGAGCATCTTGCC 58 6163071 6163089 TTTACATCCTTCTTCAGCG 57 NA Drosophila melanogaster 50 CG33654 FBgn0053654 FBtr0091633 2 1 1 75 3R 5408712 5408733 GGAGCTATAAGTACTTAACGCT 59 5408566 5408584 AACATGAAGGGTCTGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34301 FBgn0085330 FBtr0112497 1 1 1 73 3R 4599184 4599205 GATTTCCATTCCATACCTAAGC 58 4599239 4599257 AGAAAGGTCTTCAGGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33779 FBgn0053779 FBtr0091780 1 1 1 60 3R 4030176 4030194 ATTGAAGGCCTATTGGTCG 59 4030134 4030152 AAAGTCCGTCTTAACTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 zen FBgn0004053 FBtr0081670 2 1 1 60 3R 2579834 2579853 CTACTATCCAGTTCACCAGG 58 2579793 2579812 TTTAACCTCGGAAGGATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6838 FBgn0037182 FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186 1 4 4 88 3L 22709292 22709405 TCAGTAAGGATCCAAACCC 58 22709222 22709240 ATTAAGCAGATTCACGCTG 58 NA Drosophila melanogaster 50 CG10566 FBgn0037050 FBtr0078292 1 1 1 81 3L 21125772 21125854 GTCGTTATTCTTTGCTAACGAG 59 21125896 21125914 ACTTGGTTTGTCCTCTTCG 59 NA Drosophila melanogaster 50 CG5059 FBgn0037007 FBtr0078218,FBtr0078216,FBtr0078217,FBtr0078219 3 4 4 116 3L 20508982 20509000 TGATGAGCTCAGAAACGTG 59 20508709 20508828 TCAATGTTCCAGCTACTGG 59 NA DesignRelaxed Drosophila melanogaster 50 Lmpt FBgn0036672 FBtr0089452,FBtr0089457,FBtr0089456,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459,FBtr0089455 3 8 8 78 3L 16914083 16914101 GAGCAGGAGATCTATTGCG 59 16914143 16914289 AGGTGATGACCTTATTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 CG9674 FBgn0036663 FBtr0075342,FBtr0075341,FBtr0075343,FBtr0075344 2 4 4 96 3L 16784163 16784181 GCAGACGATAATGTAACCG 58 16784030 16784103 CCTCTCCATATTTGCATGC 58 NA Drosophila melanogaster 50 CG13454 FBgn0036503 FBtr0075603 2 1 1 66 3L 15510070 15510090 GAGGATATGTTCAAGGAAGTG 58 15510024 15510042 AGAAATCCTCGTTTCCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6707 FBgn0036058 FBtr0076356,FBtr0076358,FBtr0076357 1 3 3 82 3L 9889096 9889114 CTGGTGTTCCTCATCACAG 59 9888951 9888969 TAGAGGAAGTACATGCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG8108 FBgn0027567 FBtr0076339,FBtr0076340 1 2 2 102 3L 9858406 9858424 CACTACGACAACAGGAGTC 59 9858490 9859423 GAGATGAGTCATAGCTGCG 59 NA Drosophila melanogaster 50 CG4942 FBgn0035960 FBtr0076524 3 1 1 60 3L 9066371 9066392 CATACCAAGGAACAACTATTGC 59 9066413 9066431 GCTTCTGTAGACGACAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5804 FBgn0035926 FBtr0076591 2 1 1 147 3L 8781445 8781463 GTACAAGCAGTTCCAGGAG 59 8781316 8781335 GTTGTACTTCTCGTACAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7942 FBgn0035838 FBtr0076687,FBtr0076686 2 2 2 60 3L 8115440 8115458 ATAAGCGGAATCTTCAAGG 57 8115482 8115500 TATACGGAGGGAATTCGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lark FBgn0011640 FBtr0076842,FBtr0076843,FBtr0076841,FBtr0076844 3 4 5 100 3L 7333781 7333799 TACAGAGATCGCATGTACG 58 7333861 7333986 TAGTCATAGTCCCTAAAGCCA 59 NA Drosophila melanogaster 50 ple FBgn0005626 FBtr0076957,FBtr0076956 2 2 2 166 3L 6709238 6709257 TTAACTCACCATACCACACC 59 6708457 6708814 GAACCAGTATACCGTGGAC 59 NA Drosophila melanogaster 50 Pk61C FBgn0020386 FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466 3 8 8 107 3L 142872 142953 CGCAAAGAACTCTTTCGAC 59 143024 143042 TTCTTGAGGATCACTTCGC 59 NA Drosophila melanogaster 50 apt FBgn0015903 FBtr0072066 2 1 5 116 2R 19452572 19484432 CGGTCAACAAACAGTATTCG 59 19484508 19484591 GTGTCATTTCCGTCTTTATGTC 59 NA Drosophila melanogaster 50 CG30280 FBgn0050280 FBtr0071759 3 1 1 102 2R 18001831 18001849 TCTCCACATATGATCGGGA 59 18001915 18001995 TTAAGGTTGCTGTCCAGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG15111 FBgn0034419 FBtr0086581,FBtr0086580 3 2 2 69 2R 15027275 15027293 TATTCCGTAACGTTCCAGC 59 15027389 15027407 TGAGATCAAGTCCTTTGGG 58 NA DesignNoJunction Drosophila melanogaster 50 qkr54B FBgn0022987 FBtr0086925,FBtr0086923 1 2 3 80 2R 13359115 13359204 CATCACAGCTATAGGAGCTC 59 13359244 13359265 CAATATGGACATCACTTTCTGC 59 NA Drosophila melanogaster 50 l(2)k01209 FBgn0022029 FBtr0086914,FBtr0086912,FBtr0086913,FBtr0086915 3 4 4 96 2R 13311459 13311541 TTCGTCATAGGAATCTGCG 59 13311601 13311619 ACAACAGTGTTACCCATGG 59 NA Drosophila melanogaster 50 unc-104 FBgn0034155 FBtr0087079 2 1 4 94 2R 12645902 12646140 TGATACCTTCTAGGCAACG 58 12645826 12645845 GCTCTCCACATTATAGTCCG 59 NA Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 2 5 7 81 2R 11836642 11836721 TTTGCTACGTGCTACTCTC 59 11836579 11836599 TCCGCTCTAGTTATATTCGAG 58 NA Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 3 12 12 123 2R 6499316 6499432 TCTATCAAATACCACCGAACC 59 6499517 6499535 ATTCGAGTTGCTCTCATCG 59 NA InUTR Drosophila melanogaster 50 lt FBgn0002566 FBtr0111123,FBtr0111125,FBtr0111124 1 3 3 80 2L 22832737 22832816 GCATAGTTGACTACTTTAGCC 58 22832857 22832876 GTGATTGTCGAAGATTTGGA 58 NA Drosophila melanogaster 50 CG9339 FBgn0032901 FBtr0081443,FBtr0081442,FBtr0081446,FBtr0081440,FBtr0081441,FBtr0081444,FBtr0081447,FBtr0081445 1 8 8 80 2L 20877196 20877214 CTGCAAGAAGATACCAGTG 57 20877069 20877155 GAAATATACTGGGTACTCAGTC 57 NA Drosophila melanogaster 50 CG32972 FBgn0028905 FBtr0080599,FBtr0080600 2 2 2 131 2L 14164509 14164588 AATGATGTGACTCTCACCAC 59 14164397 14164415 CTGCAGGATATCTCCAACG 59 NA Drosophila melanogaster 50 CG9302 FBgn0032514 FBtr0080470 1 1 1 87 2L 13377039 13377057 GTCATGTTCTATGCACCCT 59 13376907 13376925 GAGGATCATCCTGTAAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7224 FBgn0031971 FBtr0100151 3 1 2 157 2L 7999077 7999098 GCATAACCGATAAAGGAAATCC 59 7999215 7999234 TTGAAAGAACGTTAGCATCG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG5261 FBgn0031912 FBtr0079445,FBtr0079444 2 2 2 104 2L 7428203 7428285 TAAGCTCAACGAAGGTGAC 59 7428352 7428371 CCCTGGATGAGAATCTTAGC 59 NA Drosophila melanogaster 50 torp4a FBgn0025615 FBtr0070690 3 1 1 111 X 4543530 4543609 GATGAATTAGAAAGATCCCTGG 58 4543440 4543458 GTTTCCGTGACTTATTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ocn FBgn0041102 FBtr0085599 3 1 1 197 3R 25863082 25863157 GAGGAAATCTTTGAGGAAATCC 59 25862851 25862870 GTTGTAATGCTGGAATTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 Trc8 FBgn0039668 FBtr0085431,FBtr0085430,FBtr0085432,FBtr0085429 1 4 4 92 3R 25325968 25326046 GCTATCAGGAAATGTATTCCG 58 25325896 25325914 AACGATCCTGAACGTACAG 59 NA Drosophila melanogaster 50 RpS29 FBgn0037752 FBtr0082137 1 1 2 149 3R 5604292 5604310 GATTCTTTGATGGAACCGA 57 5604423 5604499 GCTTCTTGAAGCCAATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4962 FBgn0036597 FBtr0075471 1 1 1 84 3L 16288493 16288574 CTGATTGCCCTCATCTCTG 59 16288427 16288445 CGTATCCCAGTCCATATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32147 FBgn0047178 FBtr0075647 1 1 1 61 3L 15136794 15136901 CATATCTTGTTATCCATGTCGG 58 15136754 15136773 CAGCTTCTCGATGTATACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5280 FBgn0035952 FBtr0076552 1 1 1 61 3L 8982482 8982567 GAGGATCTCATAAACGAGCT 58 8982440 8982458 ATTTCCGTCAACCACTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 mago FBgn0002736 FBtr0071569 1 1 1 154 2R 17016322 17016340 AAGAACGACACCATGATCC 59 17016458 17016534 ATGACGATCTCCAGTTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6g2 FBgn0033696 FBtr0088009 1 1 1 117 2R 8076681 8076699 CTTCTGGGAGGGATTACTC 58 8076531 8076600 GGTTGAGGAAAGTACTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Stlk FBgn0046692 FBtr0111112 1 1 2 80 2R 434474 447872 TTTGTACAAGCAGGTTTCC 58 447913 447934 CGGAGTGAATATAAGTAAGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10194 FBgn0032790 FBtr0081285 2 1 1 61 2L 19489642 19489724 GATAAGAAATCGCTGGATCCA 59 19489601 19489619 TCGAAGGTTTCTCGTATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15458 FBgn0040651 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-A2564 FBgn0065066 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-C3227a FBgn0082940 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snRNA:U2:14B FBgn0003920 FBtr0074208 1 1 1 61 X 16148717 16148738 CCTTATGGCTAAGATCAAAGTG 58 16148757 16148778 GAGGAACTATCAGATGTTAAGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 fog FBgn0000719 FBtr0077342,FBtr0100538 3 2 2 224 X 22246596 22246614 TTTATGTGGCCAGACTTGG 59 22230909 22230929 TTCTCCTTGGTAAGGTTTCTC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG41480 FBgn0084040 FBtr0111184 1 1 1 80 X 22183306 22183929 GCATAGTTAAGATGACTGGC 58 22183245 22183264 GATTAGCGGTACATGAATGG 58 NA Drosophila melanogaster 50 CG17600 FBgn0031195 FBtr0077358 1 1 2 85 X 21930348 21930369 CAATCTTATTTCGCACCAAGAG 59 21930415 21930593 TCTTAGTGCCATTCACCTG 59 NA Drosophila melanogaster 50 CG14621 FBgn0031183 FBtr0077344 1 1 1 73 X 21847963 21847982 CTATGGCTTTACATGGACAG 58 21848372 21848392 GCAATAACTCGATAGTCTAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG1486 FBgn0031174 FBtr0077190 1 1 2 83 X 21195591 21195747 CTTCCAGTATTCGATCGGG 59 21195794 21195812 TCGACACCTTAACGTTCTC 59 NA Drosophila melanogaster 50 CG32523 FBgn0052523 FBtr0077183 3 1 1 60 X 21089523 21089542 TTATTCGTACAGGTGACGAG 59 21089564 21089583 AACGAGAGTAGAACATCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 unc FBgn0003950 FBtr0077259 1 1 1 148 X 20983986 20984067 ATAGAAACCAAGCTCCTGC 59 20983856 20983874 TTGAGGTACCGTTTCATCG 59 NA Drosophila melanogaster 50 CG11229 FBgn0031138 FBtr0077282 2 1 1 60 X 20782755 20782773 CTCTGATGACGACAAAGAC 57 20782796 20782815 AAATACGTAGGAGATGGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14234 FBgn0031065 FBtr0074790 2 1 1 104 X 19631526 19631545 AAGTACGTGACCATTCTCAC 59 19631611 19631743 GCCGATTATCCAATTGATGG 59 NA Drosophila melanogaster 50 CG14224 FBgn0031057 FBtr0074750 1 1 1 210 X 19579805 19579823 TTCAACGACTTCATGATGC 58 19580076 19580094 TCAAGGACAACTGGTTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 dome FBgn0043903 FBtr0074756 1 1 1 60 X 19572309 19572327 AATGTGATCCTCTTCAGCA 58 19572185 19572203 TGATCACGTACAGTTGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Pfrx FBgn0027621 FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720 3 8 8 60 X 19402026 19402044 GTTAAACGAGATCGATGCC 58 19402068 19402086 CTTCTCCTTGATTTGCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8010 FBgn0031008 FBtr0074688 3 1 1 144 X 19161473 19161491 ATACAACGACTTCGAGGAG 58 19161281 19161365 GTGCCTGTAATACTTCTCC 57 NA DesignNoJunction Drosophila melanogaster 50 psh FBgn0030926 FBtr0074629 1 1 1 107 X 18379263 18379339 ATATCGTCATACGAAGCGT 58 18379174 18379192 GGATGTTATCCGTCTCGAC 59 NA Drosophila melanogaster 50 CG15059 FBgn0030905 FBtr0074585,FBtr0074584 2 2 2 71 X 18153276 18153294 CAGATGCTAGGATCAGTCC 58 18153223 18153241 TTATCTTGGACCTACCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089658,FBtr0089660,FBtr0089657,FBtr0089661,FBtr0089659,FBtr0089662,FBtr0089663 1 7 7 82 X 17844790 17845235 CTAACTGTCAGGTTCCTCG 59 17844726 17844744 ATGATGGCGATTATGTCGA 58 NA Drosophila melanogaster 50 CG13001 FBgn0030806 FBtr0074417 3 1 1 82 X 16836162 16836180 ACCAACTTCCTTAAGGTGG 59 16836098 16836116 GAGTTCTGATTAACCGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 3 7 7 85 X 16270054 16270134 GAGAACGAGGTGAAATGGA 59 16270183 16270201 CTGTAGGTGGGTAAGTCCT 59 NA Drosophila melanogaster 50 CG9216 FBgn0030726 FBtr0074252,FBtr0074253,FBtr0074254 2 3 3 96 X 15989526 15989544 ACTGTTGACGGATTTAAGG 57 15989384 15989402 AATATCATCTGCCTGAGGA 57 NA DesignNoJunction Drosophila melanogaster 50 eIF5 FBgn0030719 FBtr0074149,FBtr0074144,FBtr0074148,FBtr0074147,FBtr0074146,FBtr0074150,FBtr0074145 1 7 7 127 X 15882571 15882662 GTTCGATCACAAGAATGAGC 59 15882463 15882481 AATTGGTCTCCGGATTGTC 59 NA Drosophila melanogaster 50 CG8974 FBgn0030693 FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186 1 5 5 210 X 15688455 15688537 GATCCACGTAACAAAGTTCC 58 15688199 15688217 GTTCATCCTCGTATTGCCT 59 NA DesignRelaxed Drosophila melanogaster 50 l(1)G0168 FBgn0027287 FBtr0074042,FBtr0074043 1 2 2 130 X 15403948 15403966 AAGGTGGGACTCAATAAGC 59 15404121 15404139 TCCAGGAATTGAACGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6299 FBgn0030641 FBtr0074033,FBtr0074032 1 2 2 138 X 15360380 15360398 CATATGCACCTTCTTCGAG 57 15360497 15360584 GTAGATGATCTTGATTGTGCTC 58 NA Drosophila melanogaster 50 CG9164 FBgn0030634 FBtr0074012,FBtr0074014 3 2 3 74 X 15276618 15276636 CATGAACAACATACCCGGA 59 15276372 15276581 CTATGAAAGCTGGGAAACTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG9065 FBgn0030610 FBtr0073966 2 1 1 74 X 14978660 14978678 GGTGAAATATCCGTCTCGA 58 14978541 14978559 AACTCCTTGAGATGCACTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG32603 FBgn0052603 FBtr0073894 3 1 1 73 X 14079155 14079173 GTTGTGAAGACCTACTCGG 59 14079210 14079228 TAGGTCTGAGAGTATCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32614 FBgn0052614 FBtr0073867 2 1 1 84 X 14026231 14026249 ATTTGACGATCGCCTAGAC 59 14026297 14026315 CTGGCAATTTGTGATTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15760 FBgn0030508 FBtr0073810 3 1 1 142 X 13566452 13566528 ATATACGGAGGTGACCTCC 59 13567150 13567168 TGCTATTCGCCATATACCG 59 NA Drosophila melanogaster 50 CG15745 FBgn0030469 FBtr0073758,FBtr0073759 2 2 2 60 X 13200446 13200465 CTATTCGGATGACATAACCG 57 13200485 13200506 CAGACGAAAGTATTCCATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tomosyn FBgn0030412 FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678 3 4 4 91 X 12531136 12531154 GAGAAGGGAAACATACACG 57 12531208 12531302 GTTCTAACCACTTCAATTGC 57 NA Drosophila melanogaster 50 Upf1 FBgn0030354 FBtr0073596 1 1 1 87 X 11795423 11795441 GACTTTGGGCAAATATCGC 59 11795285 11795303 AGAACTGATTCAAGCTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 p24-1 FBgn0030341 FBtr0073604 3 1 1 70 X 11745766 11745784 TTATGGTCTGGTCATCCCT 59 11745714 11745732 CCTCAGCACCATAATCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1578 FBgn0030336 FBtr0073607 3 1 1 80 X 11704489 11704576 GATCGATTCGATTATGAGGAG 57 11704429 11704448 GTTCTCGTAATTCCATCGTC 58 NA Drosophila melanogaster 50 Karl FBgn0030334 FBtr0073556,FBtr0073557 3 2 2 86 X 11684951 11684969 TATTACGCATCCACAGAGG 58 11685017 11685102 CATCGTTATATGCTGATCCTC 58 NA Drosophila melanogaster 50 CG1837 FBgn0030329 FBtr0073551 3 1 1 109 X 11612768 11612786 GTCAAATTCTTTGCACCCT 58 11612918 11612938 TCGATCTTCGAGATAGTTACG 58 NA DesignNoJunction Drosophila melanogaster 50 Ptp10D FBgn0004370 FBtr0073525,FBtr0073524 1 2 3 163 X 11567985 11568087 CATACAAATCCCAGCTCGA 59 11568214 11568232 TGCTGTAGCGTATTGTAGC 59 NA Drosophila melanogaster 50 Cyp4g15 FBgn0030304 FBtr0073504,FBtr0073503 2 2 2 271 X 11376433 11376452 GAGGATCTCAAGCTGAACTC 59 11376782 11376800 GAGTAGACACGGTAGTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073487,FBtr0073490,FBtr0073486,FBtr0073488,FBtr0073485,FBtr0112813,FBtr0112812,FBtr0073489 1 8 12 99 X 11291936 11292011 ATATAACCAGAGAACCGCG 59 11292074 11292092 GACACATAGATACCCTGGC 59 NA Drosophila melanogaster 50 sev FBgn0003366 FBtr0073393 1 1 1 84 X 10972703 10972721 TTAGCCGATTACGACTGTG 59 10972571 10972657 CAAATCGGAACCTGTATTGTG 59 NA Drosophila melanogaster 50 CG2157 FBgn0030244 FBtr0073382 2 1 1 113 X 10764123 10764220 TCTGGGTGGATTAGATGGT 59 10764297 10764315 GATCCATAGCCACCAAGAG 59 NA Drosophila melanogaster 50 spri FBgn0085443 FBtr0112688,FBtr0112689 1 2 4 86 X 10386360 10390835 CGTGAAGTCTTATGTCACC 57 10386292 10386310 CAATTGAAGGGTGTATGCC 58 NA Drosophila melanogaster 50 CG9691 FBgn0030160 FBtr0071391 3 1 2 299 X 9778650 9778668 TCTTCAAGAACCTAGGCTG 58 9779000 9779018 AAACTTATGCAACGAGACG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12112 FBgn0030048 FBtr0071233 3 1 1 94 X 8453600 8453693 GGATCTATACGAATTCCATGC 58 8453526 8453545 GTAGTTCAGAAGGATGTCCT 58 NA Drosophila melanogaster 50 CG2116 FBgn0030003 FBtr0071152 3 1 1 60 X 8025459 8025478 TTGAGGACAATCAACCAGAG 59 8025501 8025519 CTCTCGTCCAAATATTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gclc FBgn0040319 FBtr0071108,FBtr0071107 3 2 2 111 X 7997903 7997922 CATTGAACAGTATCTTCGCT 57 7997745 7997829 GGAATCCTGCTTGTAATCC 57 NA Drosophila melanogaster 50 CG10932 FBgn0029969 FBtr0071143 2 1 1 63 X 7781998 7782016 GAGATCGTCATCTCAGAGG 58 7781953 7781971 CCAACTGTCCAAACTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32727 FBgn0052727 FBtr0071056 3 1 1 62 X 7301628 7301649 TAAGTATTAGTCCTAACGCTCC 58 7301672 7301690 TTCGATCCGGATGTTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CheA7a FBgn0029948 FBtr0071055 2 1 1 60 X 7272237 7272255 TCTTGGTTCATAGTTGTCG 57 7272278 7272297 ATCGTAAAGGTGTTTAGCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pod1 FBgn0029903 FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966 2 5 6 106 X 6701674 6702857 CAATTATTCCACGTTTGGGTC 59 6702925 6702943 GATATTCTCGTGGGATCCC 58 NA Drosophila melanogaster 50 pod1 FBgn0029903 FBtr0070965,FBtr0070968,FBtr0070967,FBtr0112956,FBtr0070964,FBtr0070966 1 6 6 80 X 6700768 6700786 GGTTTGATGTACTCCACAG 57 6700827 6700924 CTCATTGTTCGAGAATATCTCC 58 NA Drosophila melanogaster 50 shf FBgn0003390 FBtr0070978 2 1 1 227 X 6667951 6667972 CCTACTTCACTAACAACTTTGC 59 6666120 6667098 GTCCTTGCAAATACCACCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG4666 FBgn0029838 FBtr0070887 1 1 1 70 X 5970626 5970644 TTCAGACCAAGCTGATCTG 59 5970574 5970594 GTCCGAAAGGGTAATAAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15465 FBgn0029746 FBtr0070742 2 1 1 60 X 5069987 5070005 CAATTGCAACCCTCATCAC 59 5070026 5070047 GATTCTGACTTATAATCGCCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4068 FBgn0029738 FBtr0112949,FBtr0070728,FBtr0112950,FBtr0070729,FBtr0112948 1 5 5 111 X 4822286 4822304 GGATTCGGGATTCGATGAG 59 4822109 4822127 GACTAGGATTAGCTGCACC 59 NA DesignNoJunction Drosophila melanogaster 50 l(1)G0334 FBgn0028325 FBtr0070708,FBtr0070710,FBtr0070709,FBtr0070711 2 4 4 150 X 4598141 4598234 ACAACAACTACGGAATGGG 59 4598348 4598366 TTCACATAGTTGATGGCGA 58 NA Drosophila melanogaster 50 peb FBgn0003053 FBtr0100265,FBtr0070680 1 2 2 178 X 4514859 4514877 ATACGGAGAACTTCACCTG 58 4515310 4515328 AACTTGATGCTGTTTGTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG2865 FBgn0023526 FBtr0070408 1 1 1 61 X 2186463 2186481 TGGAGAGGATCAAGGACTC 59 2186420 2186438 GTAGGTGTTGTTGATGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0144 FBgn0027296 FBtr0070414 3 1 1 199 X 2155442 2155510 ACTCATTTCAAAGTGCCGA 59 2155261 2155279 GTAGCAGCTGTAGTCACTG 59 NA Drosophila melanogaster 50 CG3835 FBgn0023507 FBtr0070383,FBtr0070382,FBtr0070381 3 3 3 272 X 2038240 2038324 TTCAAGTTCCTGAACTCCC 59 2038560 2038578 AATGTTGTAGAAGTCCCGC 59 NA DesignRelaxed Drosophila melanogaster 50 Nmdar2 FBgn0053513 FBtr0070288,FBtr0091454,FBtr0091453 2 3 3 132 X 1385974 1386202 GTGGGAAGAGATTGGAGTG 59 1385860 1385881 GAGGAATGTGATCTTCAAATGG 59 NA Drosophila melanogaster 50 CG11418 FBgn0024360 FBtr0070237,FBtr0070236 3 2 2 60 X 1239534 1239553 CCTGTTGAACCTGTTTAAGC 59 1239493 1239511 CTTGAAGAACATGTTCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18823 FBgn0042146 FBtr0070171 3 1 1 76 X 884751 884769 ATAACGAAGGGTTCATCCA 58 884809 884827 GAAGACAATTTGGTCGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12467 FBgn0025623 FBtr0112912,FBtr0112913 3 2 2 101 X 712956 712975 TCACCTAACTGTCGTTTCTG 59 712816 712892 AGAACACAGTTAGGATCGC 59 NA Drosophila melanogaster 50 CR32011 FBgn0052011 FBtr0089182 1 1 1 84 4 30605 30624 GCTTATACACAAATGCAGGA 58 30381 30558 CTGTCACCCTTCTTAACGA 58 NA Drosophila melanogaster 50 myoglianin FBgn0026199 FBtr0089093,FBtr0089092,FBtr0089095,FBtr0089094 3 4 4 87 4 713107 713125 ATTCTAATAAAGGGCGCAG 57 712973 713057 CTATGTGAACAGTCAATGGA 57 NA Drosophila melanogaster 50 CG1909 FBgn0039911 FBtr0089080,FBtr0089079 3 2 2 80 4 606384 606471 CAAGATTATTGTAAGGAGGCC 58 606513 606531 CATGACGCGAATACTTCTC 58 NA Drosophila melanogaster 50 CG1970 FBgn0039909 FBtr0089105 2 1 1 81 4 589923 590616 GCTAAGTACATTCGAACTCTC 58 589862 589880 CATCTAAGGCATGTGTTCC 58 NA Drosophila melanogaster 50 CG2177 FBgn0039902 FBtr0114519,FBtr0089132,FBtr0089133 3 3 3 80 4 333993 334013 CTAACTCTTGGATTGGTTGTG 58 333875 333893 AACGTCTTGATGGCTAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 snoRNA:Psi28S-3305c FBgn0082974 FBtr0113593 3 1 1 60 3R 24429106 24429124 ACACCTAACTGTTAGAGCG 59 24429145 24429166 GATCTCACAGCGTTTAATAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:MeU5-C46 FBgn0043853 FBtr0081560 2 1 1 60 3R 3298754 3298774 CTGTCATTGAGTCCTAGACAG 59 3298714 3298733 ATTTCCATTTGGGTGTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 heph FBgn0011224 FBtr0085887 2 1 14 103 3R 27784840 27798232 AGAGAATTTGTAGCGACCA 58 27707592 27784776 CGCTTAACTCCAATATTAACCG 59 NA Drosophila melanogaster 50 CG2150 FBgn0003065 FBtr0085859 3 1 1 75 3R 27590419 27590437 ACTCTACTCAACTCTTCCC 57 27590063 27590382 ACTAAGAACACTGAGAAGGAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 chp FBgn0000313 FBtr0085778 1 1 1 80 3R 27032427 27032500 AATTCGCTGATGAACACGA 59 27032365 27032383 GATCCAGTTGTAGCTGAGG 59 NA Drosophila melanogaster 50 CDase FBgn0039774 FBtr0085649,FBtr0085647,FBtr0085646,FBtr0085648,FBtr0085645 1 5 5 80 3R 26289006 26289024 CTGCTCTATGACATCTCCA 58 26289067 26289145 TTTGATGCACAGATACAGTC 57 NA Drosophila melanogaster 50 Pcd FBgn0024841 FBtr0085458 2 1 1 153 3R 25549172 25549190 CTCAGTTCTGTATTCGCCA 59 25549307 25549583 TTCGTTTAGTCGTACCACC 59 NA Drosophila melanogaster 50 Ptp99A FBgn0004369 FBtr0100523,FBtr0085423,FBtr0085422,FBtr0110981 3 4 5 108 3R 25297477 25297495 CATGTGTTCCACATACACG 58 25297567 25298890 TGTAGGGTCGTAAGTTCTG 58 NA Drosophila melanogaster 50 CG31044 FBgn0051044 FBtr0085391 2 1 1 81 3R 25044253 25044272 ATAGATGGCTACTGTATGGC 58 25044315 25044334 CATTTAAATGAGCGTGAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34362 FBgn0085391 FBtr0112583 3 1 2 187 3R 23909325 23909343 TATCAGCAGGGATACATGG 58 23910334 23911140 AGTAGAGGATAAACCTGGG 57 NA Drosophila melanogaster 50 betaTub97EF FBgn0003890 FBtr0085261 2 1 1 101 3R 23795149 23795167 ATCTGCTATCAGAGCTTGC 59 23794902 23795085 GGACATTGTGACGTTAATGC 59 NA Drosophila melanogaster 50 Sce FBgn0003330 FBtr0085245 1 1 1 99 3R 23506420 23506438 ACAGCAGTTGGTTATCCTG 59 23506282 23506303 CTTCCACGAGTAATACATTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13978 FBgn0039518 FBtr0085182 1 1 1 60 3R 23292575 23292593 GATCTTACTAACCCATGCC 57 23292615 23292635 GATCTTAGCCAAACTTATGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6271 FBgn0039476 FBtr0085149 1 1 1 60 3R 22851287 22851306 TTATGCCACCTCTGTTATGG 59 22851246 22851265 GTTAATCATCTTGGCAACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 T48 FBgn0004359 FBtr0085065 1 1 1 60 3R 22735562 22735580 GAATGCGGAGTACTTTCTG 58 22735604 22735622 ATAGAGCTTCCTGATCTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6447 FBgn0039437 FBtr0085055,FBtr0085056 3 2 2 220 3R 22450655 22450673 AGATCTTGCCCAGAAACTG 59 22450453 22450471 TCTGAGCATTAGCCTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dys FBgn0039411 FBtr0113293,FBtr0084970,FBtr0113294 2 3 3 83 3R 21904394 21904537 GTACTCAACGATCGAGAGG 59 21904329 21904347 GAACTGGATCTTCGACTGG 59 NA Drosophila melanogaster 50 CG14545 FBgn0040602 FBtr0084913 3 1 1 62 3R 21676487 21676505 GAGAGCATTGAGACTACGA 58 21676443 21676461 TGACATCGGTGTACATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha4GT2 FBgn0039378 FBtr0084906 1 1 1 60 3R 21668118 21668137 CCAACAGACATAACGTAACC 58 21668160 21668178 TTCCAAACATGAATCACCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17770 FBgn0039374 FBtr0084903 1 1 1 60 3R 21637939 21637958 GGTGAGTTATATCTCAGCGA 58 21637981 21637999 TAGACATGTTTGCGTACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31370 FBgn0051370 FBtr0084829 1 1 1 122 3R 21129292 21129313 GGGAAACACTAAGAAAGATTGG 59 21129487 21129505 CAGTTTCTTCGTTAGTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31098 FBgn0051098 FBtr0084863 2 1 1 82 3R 21117525 21117543 GAAGCTAAACTACCAGGGA 58 21117403 21117480 CAATGACACCCATAAGACTG 58 NA Drosophila melanogaster 50 HDC15381 FBgn0086610 FBtr0113461 3 1 1 157 3R 20203015 20203033 TGTACGATGTTGTGGAGAC 59 20203210 20203301 ATTATCCAGGGATGGAACC 58 NA Drosophila melanogaster 50 mask FBgn0043884 FBtr0084563,FBtr0084562 1 2 2 111 3R 20068259 20068390 CATTCAAGAGAACACCAAACTC 59 20068462 20068480 AGTCTTGTCCAAACTCACG 59 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 3 5 6 83 3R 20045868 20045949 CTAGAGATTACTGGCTGCG 59 20045803 20045821 GTTGTCGTTCAGGTAGAGG 59 NA Drosophila melanogaster 50 spas FBgn0039141 FBtr0084533,FBtr0084534 2 2 2 69 3R 19866501 19866520 AAATGGTCATTCTACCCTCC 59 19866610 19866628 AATAAACCCTTAGCCGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13602 FBgn0039127 FBtr0110793,FBtr0084521 1 2 2 60 3R 19753767 19753785 GCTGATATGCTGAGTGAGG 59 19753725 19753745 GCTCATAGTATATGAGACCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tst FBgn0039117 FBtr0084462 3 1 1 181 3R 19594956 19595041 CTAGAAATAAGCCCTTTGCTG 59 19594795 19594813 AATATCGCGCTTGATAGCA 59 NA Drosophila melanogaster 50 Rpn9 FBgn0028691 FBtr0084469,FBtr0084470 3 2 2 121 3R 19557825 19557843 TTCTTGAGTCGCTTAAGGG 59 19557661 19557679 CAAATCGGGAATCTTGGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4448 FBgn0039067 FBtr0084387 1 1 1 94 3R 19082119 19082215 AACTCCTACAACGAATACGG 59 19082044 19082064 CTATACATGAGTGGGTAGTGG 59 NA Drosophila melanogaster 50 CG4721 FBgn0039024 FBtr0084317 2 1 1 60 3R 18590492 18590511 CGGACTTATTCTGAACATGG 58 18590451 18590469 CTTCCACTGGAGAACACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7029 FBgn0039026 FBtr0084312,FBtr0113270,FBtr0113271,FBtr0113269 2 4 4 92 3R 18614229 18614308 TAGTTTCTATGCGGATCCC 58 18614364 18614382 TTGCGTTTCACTATGTCCT 59 NA Drosophila melanogaster 50 CG10825 FBgn0038860 FBtr0084015,FBtr0113258,FBtr0084014 1 3 3 60 3R 16956445 16956464 AGTTCACTCTACAGCTTTCC 59 16956486 16956505 GTTGCTTAAGATTCAGCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ppan FBgn0010770 FBtr0084012 1 1 1 253 3R 16943022 16943040 ACTGTATCACGACCATGTG 59 16943257 16943326 TGAACAGTTCTTCGTCTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG7056 FBgn0038852 FBtr0084037 3 1 1 60 3R 16906163 16906181 CATCTACGATCTATCCCGC 59 16906121 16906140 GGAGTCCATACTCTTCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS30 FBgn0038834 FBtr0083969,FBtr0083970 1 2 2 112 3R 16676605 16676623 TGGACTAGAGACCATCGAG 59 16676786 16676804 AATCGAGGCTGAATTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31203 FBgn0051203 FBtr0083926,FBtr0083924,FBtr0083923,FBtr0083925,FBtr0083927 1 5 5 86 3R 16575021 16575039 GATGGAATTACGGAAAGCC 58 16575088 16575199 GAACATAACCCTAAACACGG 58 NA Drosophila melanogaster 50 Cpr92F FBgn0038819 FBtr0083919 3 1 1 72 3R 16497920 16497938 CATGGTAGCTACTACGGTG 59 16497972 16497992 CTTAATAGTGGTCATAGTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5060 FBgn0038780 FBtr0113251,FBtr0083871 3 2 2 201 3R 16116118 16116136 TTCAAGAAGGGAGACATCG 58 16116301 16116697 TTGATCGACTGTCACTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG31219 FBgn0051219 FBtr0113400 3 1 2 106 3R 15477461 15477480 AGAAGATCATAGTGCATGGG 59 15477549 15477679 GATTCCTGTCCTATAGCGC 59 NA Drosophila melanogaster 50 CG17751 FBgn0038717 FBtr0083778 3 1 1 83 3R 15433735 15433753 TATGGACACCCAGTATGTC 58 15433857 15433875 ATGATGTTTAGCCCGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6255 FBgn0038708 FBtr0083769 2 1 1 60 3R 15288547 15288566 GTTCTAGTCCAGGGATTCAC 59 15288506 15288524 ACTTTATGGACTCCTCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7208 FBgn0038575 FBtr0083618,FBtr0083617 3 2 2 282 3R 14010549 14010567 AAGAGCTCTATGCTTCTGC 59 14010221 14010240 CAAATATGGAAGCCATGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3534 FBgn0038463 FBtr0083370 2 1 1 94 3R 12824613 12824631 AAATCCTTGTCACAGGAGG 59 12824688 12824766 TCCTTCATCCTGGATATGGA 59 NA Drosophila melanogaster 50 gish FBgn0011253 FBtr0083265,FBtr0083263 3 2 8 83 3R 12118541 12121395 CTATTAGGATCACATGCAGAG 57 12121440 12121458 CAACTCCATAACAAGAGCA 57 NA Drosophila melanogaster 50 CG18522 FBgn0038347 FBtr0083154 3 1 1 85 3R 11361063 11361083 CCATGGAGGGAAAGATTATCC 59 11360776 11361018 GGGCATAATCTTGTAGGAGTC 59 NA Drosophila melanogaster 50 CG4338 FBgn0038313 FBtr0083066 1 1 1 60 3R 11102006 11102026 TTAAGGTGCAGAATGAGTACC 59 11102048 11102066 AGATCCCTAGGCTTATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4210 FBgn0038302 FBtr0083049,FBtr0083050 2 2 2 94 3R 11040075 11040153 ACAACGATACTGATCAGGC 59 11040211 11040229 GACATAGATGTCCTCGACG 59 NA Drosophila melanogaster 50 CG6934 FBgn0038289 FBtr0083039 1 1 1 63 3R 10937536 10937554 ATCTGGATGTACGGAAGTG 58 10937491 10937509 TTCATTTGCTAACCCAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3563 FBgn0038259 FBtr0082989,FBtr0113234,FBtr0082988 2 3 3 124 3R 10616865 10616883 GTTACAGTAGTGCCTCGAC 59 10616970 10619179 ATAAGTGGCTTGTATCTTGC 57 NA DesignRelaxed Drosophila melanogaster 50 Neu3 FBgn0051314 FBtr0100189,FBtr0082973 2 2 2 83 3R 10496557 10497104 TATCTGCTTAAGCAGGCAG 59 10496492 10496510 GTAGTCGTGACTATGGTCG 59 NA Drosophila melanogaster 50 trx FBgn0003862 FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949 1 5 5 81 3R 10091189 10091208 ATGTTGGAGTCTTCAGATCC 59 10091050 10091145 TCGATAACCATTTCACCCG 59 NA Drosophila melanogaster 50 primo-2 FBgn0040076 FBtr0091746,FBtr0091745 2 2 2 67 3R 9536736 9536948 CCTATTATGACATTGGTGAAGC 59 9536690 9536708 ATTCCTACACGCTATGCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Task6 FBgn0038165 FBtr0082850 3 1 1 138 3R 9496547 9496640 TAACCACTATAGGCTTTGGC 59 9496428 9496446 ACTAACAAGTTCAGCGAGG 59 NA Drosophila melanogaster 50 CG5538 FBgn0038052 FBtr0082631 1 1 1 60 3R 8274089 8274109 TTGGGACTAGACAATAACGTG 59 8274130 8274149 GTTTGGTATAGGTCCATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17207 FBgn0038051 FBtr0082682 3 1 1 61 3R 8264399 8264417 ATAATGCTGAGGTCTCGAC 58 8264356 8264374 CAGTTCACGAAGGTAAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17207 FBgn0038051 FBtr0082682 1 1 1 60 3R 8264530 8264548 CCGGAAAGAGGATTTATGC 58 8264488 8264506 GCTATCCGAAGGTAACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33098 FBgn0053098 FBtr0082580,FBtr0082579 3 2 3 123 3R 8213638 8213708 AGCTGAAGGAAGTCTTCTC 58 8213794 8213813 ATCATCTGTTCCAGTAGCTG 59 NA Drosophila melanogaster 50 CG17639 FBgn0038029 FBtr0114565,FBtr0082576 1 2 2 99 3R 8210530 8210937 TCACGGACTACTATTTCCC 58 8211000 8211018 AAGATTGTGTTTAGCCAGC 58 NA Drosophila melanogaster 50 Tk FBgn0037976 FBtr0082488 1 1 1 60 3R 7820877 7821100 CTCCGATTCCTATGACTTGAG 59 7820837 7820856 AAATTTGCTGTTGAAGTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 HisCl1 FBgn0037950 FBtr0082470 2 1 3 156 3R 7614596 7614614 TATAGACGTCTGGATGTCG 57 7614734 7614804 TAGTGCAGACTTTAGGTCG 58 NA Drosophila melanogaster 50 l(3)neo38 FBgn0086910 FBtr0082533,FBtr0110877,FBtr0110876 2 3 3 125 3R 7596969 7596990 AATATCTCCATACCGTACTCAC 58 7595815 7596883 CTGGTTGAGGACTTCTTCC 59 NA Drosophila melanogaster 50 CG12420 FBgn0037797 FBtr0082222 1 1 1 172 3R 6049093 6049111 TATGAGTACGCGAAAGCAG 59 6049376 6049394 TAAAGCAATCCGTCACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5361 FBgn0037786 FBtr0082201 2 1 1 60 3R 5900895 5900915 TTATTGGAAGGATAAGGTGGC 59 5900855 5900874 CTCATCAATGCCCTTATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210 1 5 8 80 3R 5834567 5835034 TCTACGAAGGTTCAAACCG 59 5834505 5834523 GTCGGTGGATATCTCAGTG 59 NA Drosophila melanogaster 50 CG8358 FBgn0037727 FBtr0082081 2 1 1 60 3R 5501442 5501460 GCGGAATTCATGAAATCCT 58 5501484 5501502 ACTCGTAGAAATTCTCGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11963 FBgn0037643 FBtr0113206,FBtr0081957 1 2 2 100 3R 4767465 4767485 GGTATTATGCGTTGTGATGTC 59 4767547 4767633 ACTTTGGTTCCCTGAAGAC 59 NA Drosophila melanogaster 50 Pif1A FBgn0027540 FBtr0091714,FBtr0091715 1 2 2 98 3R 4612636 4616239 GATGTCAAGATAACCCAACTC 58 4612558 4612576 ACTGCTCTTCATTGTTGTG 58 NA Nonspecific Drosophila melanogaster 50 CG11753 FBgn0037603 FBtr0081879 2 1 1 141 3R 4478997 4479086 TCGAATACCATGAGATCCAC 58 4479190 4479276 AAGGTGCAACTAAAGTCCA 59 NA Drosophila melanogaster 50 CG7549 FBgn0037559 FBtr0110951 2 1 3 90 3R 4083213 4084123 TCGGTTTAGGTTTCAGTCTG 59 4084176 4084194 TTGTAGCTAATAGCCCGTC 58 NA Drosophila melanogaster 50 CG18746 FBgn0042103 FBtr0081775 2 1 1 85 3R 3615386 3615468 TCTAGTTCCAGCATAGAGGT 59 3615320 3615338 GAAGAGGGACATGTGATGG 59 NA Drosophila melanogaster 50 alpha-Est7 FBgn0015575 FBtr0081550 3 1 2 180 3R 3346786 3346863 GGCTTTGGGATTTATGAGTC 58 3346625 3346644 CATCATGTAGTGAGTGGAGG 59 NA Drosophila melanogaster 50 RacGAP84C FBgn0045843 FBtr0081581,FBtr0081580 2 2 2 60 3R 3112952 3112970 GTCTCAGTTCTTGGAGGTC 59 3112994 3113012 CTCAAAGTCATAGGTGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1227 FBgn0037491 FBtr0081598 1 1 1 80 3R 3074116 3074190 ATTTACACAGAGGACATGCA 59 3074055 3074073 AACACTAAACACGAATGGC 58 NA Drosophila melanogaster 50 bcd FBgn0000166 FBtr0081666,FBtr0081664,FBtr0081667,FBtr0081668,FBtr0081665 2 5 5 76 3R 2582456 2582474 TGGATACGATAATGCAAGC 57 2582398 2582416 CTAATTGAAGCAGTAGGCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gasp FBgn0026077 FBtr0112922 1 1 2 82 3R 1919999 1920017 CACAGTGTTCAAGATTGGC 59 1915402 1919953 CATAGTAATCCTCGCACCC 59 NA Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078675,FBtr0078672 3 2 5 166 3R 1586675 1587377 ATTCGGACATCAAATCGTG 58 1586471 1586489 GGATGACATCTACCTTGCA 59 NA Drosophila melanogaster 50 CG2182 FBgn0037360 FBtr0078730,FBtr0078731 1 2 2 92 3R 1483649 1483875 CTGCCGTACAAAGATTGAG 58 1483575 1483593 ATATGAGCGTACAACTGGG 59 NA Drosophila melanogaster 50 Or83b FBgn0037324 FBtr0113193,FBtr0078794 1 2 2 86 3R 1233862 1233880 TCGGATACCTAGGATACGC 59 1233433 1233812 CCATGACGGATGAACTCTC 59 NA Drosophila melanogaster 50 CG1115 FBgn0037299 FBtr0078777 1 1 1 88 3R 1052510 1052528 AAATACTTCTCTGCCAGCC 59 1052580 1052598 GACCCATGATTGGGTAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338 1 5 15 165 3R 110121 120861 CGTTAAAGGAGGTGATGGA 58 120990 121008 CTTATCGCGAATGTCTTGC 59 NA Drosophila melanogaster 50 snoRNA:Me18S-A1806 FBgn0086074 FBtr0114350 3 1 1 60 3L 7632834 7632852 TTTACTACCCGAACCATCG 59 7632875 7632894 TGAATCAGAATTACGTCCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CkIIalpha FBgn0000258 FBtr0070042,FBtr0070043 3 2 3 269 3L 23093381 23093399 GGATATCATACGAGACGGA 57 23095396 23095414 ATATTCATCCGGTTTGTGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 jim FBgn0027339 FBtr0078581 1 1 3 172 3L 22790350 22790371 GTGTAAGAGAAGTAATGAGCAG 58 22789580 22790217 CGAATTTGCGAAATTTGCC 59 NA InUTR Drosophila melanogaster 50 SPoCk FBgn0052451 FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532 3 4 4 61 3L 22771883 22771901 AAATGGTGACTGGAGATGC 59 22776520 22776539 ATCGATACCGATGAGATTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32447 FBgn0052447 FBtr0078460,FBtr0078461 3 2 2 187 3L 21687570 21687588 CCCGTTCTGCTATTATCCT 58 21686807 21687419 GTCGTATAAACATGCCTGG 58 NA Drosophila melanogaster 50 CG12452 FBgn0037029 FBtr0078261 1 1 1 267 3L 20812278 20812296 TCAGCATCAGCAGAATCAG 59 20812527 20812545 CTCAAGTTCCTGTTCACGT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234 1 10 10 72 3L 20826943 20826961 CAAATGCGTCAAACTGGAC 59 20827129 20827147 GTTGCGTTTGAGTATGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234 3 10 10 74 3L 20826941 20826959 CTCAAATGCGTCAAACTGG 59 20827129 20827147 GTTGCGTTTGAGTATGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32225 FBgn0052225 FBtr0074845 2 1 1 155 3L 20297929 20297947 CTTCATGTTCAAGGACAGC 58 20297735 20297810 TTGAAGTATCTCCAACCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6933 FBgn0036952 FBtr0074855,FBtr0074854,FBtr0074853 1 3 3 60 3L 20211887 20211905 GTACCCATAACCGATGTGG 59 20211845 20211863 TTCTTGCAACCCTCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33255 FBgn0053255 FBtr0074997 1 1 1 142 3L 19417130 19417148 GCTTCTGAGATTGCTTCCT 59 19417821 19417839 CCTTGGAGTCCATACTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6852 FBgn0036820 FBtr0075063 3 1 2 109 3L 18862861 18862879 GATGGCAACGAAATTCAGG 59 18863017 18863035 ATTCGTTTGATGTCAGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5290 FBgn0036772 FBtr0075152 2 1 1 92 3L 17904860 17904933 AATCAAAGGTCCTGATTTGG 58 17904787 17904805 TAAACTGCTCATACAGGGA 57 NA Drosophila melanogaster 50 CG6497 FBgn0036704 FBtr0075250 1 1 1 60 3L 17246847 17246865 CGTACATAGCGCTCTACAG 59 17246805 17246823 CATTGGTAGTGCAAGTAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13028 FBgn0036676 FBtr0075261 1 1 1 60 3L 16916581 16916599 TTCAAACCCAATGGATCAC 57 16916623 16916641 GTAGGTTACTGCCACTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lmpt FBgn0036672 FBtr0089452,FBtr0089457,FBtr0089456,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459,FBtr0089455 1 8 8 80 3L 16914082 16914100 GGAGCAGGAGATCTATTGC 59 16914143 16914290 GAGGTGATGACCTTATTGCA 59 NA Drosophila melanogaster 50 Lasp FBgn0063485 FBtr0100145 3 1 2 121 3L 16674002 16674020 ATCAAACAGAACACGAAGC 58 16673020 16673917 TATTCCGATTCATTGCTGC 58 NA Drosophila melanogaster 50 CG32158 FBgn0052158 FBtr0075407,FBtr0113426 1 2 7 81 3L 16513216 16513234 CAAACATTATCGACGCCTC 58 16511681 16513171 CTCTCGCATCCTGTATCTG 59 NA Drosophila melanogaster 50 CG4729 FBgn0036623 FBtr0075417,FBtr0075419,FBtr0075418 3 3 4 82 3L 16377075 16377093 ATCAAGCCCATAGACAAGC 59 16376951 16377030 GACACGAAGATAAGTTGGGA 59 NA Drosophila melanogaster 50 PDCD-5 FBgn0036580 FBtr0075483 3 1 1 190 3L 16224983 16225001 TGTCGGATAGTGATTTGGA 57 16224503 16224579 TTTGAGGGTATTAAGTCGTG 57 NA Drosophila melanogaster 50 CG13073 FBgn0036577 FBtr0075486,FBtr0075485 3 2 2 68 3L 16206247 16206266 TCATACTGTACACGGAAGTC 58 16206198 16206216 ACTTCGAATGGAAATCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9425 FBgn0036451 FBtr0075693,FBtr0075692 1 2 2 73 3L 14786338 14786356 ACCAGAAGGTGATCATGAG 58 14786871 14786889 GTCCAGTGTATAACCACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13476 FBgn0036441 FBtr0075687,FBtr0075686 2 2 2 71 3L 14698767 14698788 CAGAAAGCTCTAGTTGATATCG 58 14698820 14698838 GGCATTATGGATTGTGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nan FBgn0036414 FBtr0089524 3 1 1 175 3L 14179634 14179711 CGGTTGAATATGACTGAGGA 59 14179478 14179497 TTGTTATCGGAACATTCCGA 59 NA Drosophila melanogaster 50 CG17359 FBgn0036396 FBtr0075787 3 1 1 60 3L 13992022 13992041 GCCATCAGTACTTTGAACAG 58 13991981 13992001 CAATACTCTATATCGTCCAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 26-29-p FBgn0028967 FBtr0075766 1 1 1 73 3L 13988816 13988834 GTACAAGGACGAGATTCCC 59 13988870 13988968 CAGATTGATCTTTCACCGGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG6947 FBgn0036233 FBtr0076045 3 1 1 87 3L 11972484 11972569 GAACCAGAGGATCCTTCTG 59 11972618 11972638 CATTGATGGAAGGATATGGTG 58 NA Drosophila melanogaster 50 CG11570 FBgn0036230 FBtr0076065 1 1 1 60 3L 11950333 11950353 GATTCTACGAGACACGTATCC 59 11950293 11950312 TGGTATACTGAACTCCACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11588 FBgn0036221 FBtr0076038 1 1 1 60 3L 11915368 11915388 CAACTACGGAGAATATGATGG 57 11915410 11915428 CTACTACTTTCGGTTGGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mtTFB1 FBgn0036197 FBtr0076112,FBtr0114551,FBtr0114552 2 3 3 60 3L 11702737 11702756 ACGGACAAGATAGTCAAGTC 59 11702778 11702797 CCACCTCAAGAACTAAATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7573 FBgn0036153 FBtr0076170,FBtr0076171 1 2 2 100 3L 11305505 11305523 TGTTGGGTTTGATTTGTGC 59 11305639 11305660 CTCGCTTAACATATGAATAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 Mocs1 FBgn0036122 FBtr0076206,FBtr0076205,FBtr0076204 1 3 3 102 3L 11065459 11065477 TTGGTGGATCTCATTGGAG 58 11065694 11065712 CGTGGTGATACGAATAAGG 57 NA DesignNoJunction Drosophila melanogaster 50 tna FBgn0026160 FBtr0076267,FBtr0112923,FBtr0076268 2 3 3 119 3L 10865268 10865287 AAACTATCAGCACAGTCCAG 59 10865369 10865454 ATTTCTTCGCTGTTGTCCA 59 NA Drosophila melanogaster 50 CG32062 FBgn0052062 FBtr0076290,FBtr0076289 3 2 5 225 3L 10561698 10564184 AACAGAAGACACAGTACGAG 59 10566575 10566593 CTCTGTTGTGATTCTGCTG 58 NA DesignRelaxed Drosophila melanogaster 50 alphaTub67C FBgn0004236 FBtr0076393 1 1 1 60 3L 9675308 9675328 GATTTCTGGAAAGGAAGATGC 59 9675350 9675368 CTTGCCAATGGAGTAACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34272 FBgn0085301 FBtr0112467 3 1 1 60 3L 9588180 9588199 TCAGGAGGATCATTTCTACG 58 9588219 9588240 GAACTCATCGCATAAATCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MTF-1 FBgn0040305 FBtr0113323,FBtr0113322,FBtr0113324,FBtr0076460,FBtr0076459 1 5 5 188 3L 9429057 9429075 ATACGAATGTGAGGTGTCC 59 9429335 9429353 TCTTCCGGACATTTGTAGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Hsp22 FBgn0001223 FBtr0100559,FBtr0100558 1 2 2 92 3L 9367566 9367584 CTACAGCGAGCTAAAGGTC 59 9367640 9367658 CTATAGCCACCTTGTTCGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Argk FBgn0000116 FBtr0076546,FBtr0112792,FBtr0076544,FBtr0076545,FBtr0112791,FBtr0076543 1 6 6 65 3L 9042989 9043007 AGATGGAAAGCAAGGTCAG 59 9042942 9042960 GGTAGAACTTGCCCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Unr FBgn0035895 FBtr0114592,FBtr0076661 1 2 2 80 3L 8430189 8430208 ACGATGTGGAAGGTAATGTC 59 8430062 8430149 CTAGATTACCTCTTTGGTTCGT 59 NA Drosophila melanogaster 50 DNApol-alpha50 FBgn0011762 FBtr0076603 2 1 1 80 3L 8336219 8336294 CTATCGTATGGATCATCCGA 58 8336335 8336355 ACGTATGTAGATATCGTCCTG 58 NA Drosophila melanogaster 50 CG13672 FBgn0035862 FBtr0110798 3 1 1 124 3L 8242040 8247971 ATGTCATAAGAGCCGAGAC 58 8248059 8248077 GGAGCATTCTATGAGTCCG 59 NA Drosophila melanogaster 50 CG7375 FBgn0035853 FBtr0076722 3 1 1 98 3L 8189973 8190251 TCTATTCTTGGAACCCAATCC 59 8189895 8189915 GCCTTCTTTACATTGTTCTCG 59 NA Drosophila melanogaster 50 mthl7 FBgn0035847 FBtr0076726,FBtr0076727 2 2 2 108 3L 8172115 8172135 CTGACAGCCATTTACATTAGG 58 8171964 8172045 ACTGTAGGTAAGTCTGGCT 59 NA Drosophila melanogaster 50 CG7565 FBgn0035833 FBtr0076738 3 1 1 81 3L 8082713 8082789 GTAATACGACTACTAGCTTGC 58 8082652 8082671 TAACTCTTGATGCCAATGTC 57 NA Drosophila melanogaster 50 Ect4 FBgn0085402 FBtr0112598,FBtr0112601,FBtr0112599,FBtr0112602,FBtr0112600 3 5 5 139 3L 8097909 8097988 TCTTCTCAAGGTGCATCTG 59 8098088 8098109 CATCGGGAGTTAATACTAAGAC 57 NA DesignRelaxed Drosophila melanogaster 50 RNaseX25 FBgn0010406 FBtr0076752 1 1 1 60 3L 7964068 7964086 CTTCGGTGAATGAGAAGAC 57 7964110 7964128 GGGAAACCATCGAATTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33279 FBgn0053279 FBtr0076858 2 1 1 60 3L 7446599 7446767 CCTTAAGCATTGAAACAGC 57 7446791 7446809 ATCAGGCTCAAAGTATTGG 57 NA DesignRelaxed Drosophila melanogaster 50 CG10467 FBgn0035679 FBtr0077063 3 1 1 60 3L 6087171 6087189 CAGGTGTCTAAGAACCGAG 59 6087129 6087147 TATCGAAGCCTACAAAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6462 FBgn0035663 FBtr0077039 2 1 1 60 3L 6030644 6030662 TGGAGGAGTTACAAGTCAC 58 6030685 6030704 CCAAATCCCAAGTAATCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lama FBgn0016031 FBtr0077161,FBtr0077160,FBtr0077159 3 3 3 97 3L 5338824 5338842 AACTTATCCGGATTGGGTG 59 5338685 5338764 AGGAAATGGTATTGGACCAC 59 NA Drosophila melanogaster 50 Aats-ala-m FBgn0028962 FBtr0077168 2 1 1 104 3L 5140149 5140227 TACAGTACAATCGTCATGC 57 5140295 5140313 ACTTATTCTGAAGCACAGC 57 NA Drosophila melanogaster 50 Con FBgn0005775 FBtr0073375 1 1 1 80 3L 4952941 4952960 CTGACGTTCTACACATTCCA 59 4940096 4952900 GAATTTGTTGTCTGACACGAG 59 NA Drosophila melanogaster 50 CG13708 FBgn0035577 FBtr0073358 2 1 1 60 3L 4831252 4831270 GATCAATGGATTCCAGCAC 58 4831210 4831229 CAGATCGTTGTGACATAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13711 FBgn0035572 FBtr0073347 1 1 1 60 3L 4758143 4758163 GTGGGATATCACCTGTATCTG 58 4758182 4758203 TCATGTACTCCACATTCTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13720 FBgn0035555 FBtr0073327 1 1 1 60 3L 4499087 4499105 TGATAAACTCAGAGGGAGG 57 4499045 4499063 GACGAGGGTTTAGTTTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14998 FBgn0035500 FBtr0073269 1 1 6 83 3L 4129782 4131130 CGACAAGATGAAGATAGCGT 59 4129718 4129736 TATTGTCGGCATAAGGTCC 59 NA Drosophila melanogaster 50 CG14982 FBgn0035477 FBtr0073163 2 1 1 105 3L 3944609 3944808 CGATATAGATACAACTACCAGC 57 3944874 3944892 TATTGATGTTGAAGTCGCC 57 NA Drosophila melanogaster 50 CG14959 FBgn0035427 FBtr0073050 2 1 3 164 3L 3267257 3267275 CTTCTATGCCGACATGGAG 59 3267539 3267619 TAGAACCATTTGGGTGACTC 59 NA Drosophila melanogaster 50 Shab FBgn0003383 FBtr0072975,FBtr0112829 1 2 4 85 3L 2941551 2941572 CTCCTTCCATCATATCAATCTG 58 2941618 2942577 TTGTTTGCTTTCCTGTGTC 58 NA Drosophila melanogaster 50 CG33234 FBgn0053234 FBtr0113457,FBtr0113456 1 2 2 67 3L 2662076 2662161 GTGGCTTCTTTATTGCTGC 59 2662189 2662210 GGAGATCTTTGTGAATTCACTC 59 NA DesignRelaxed Drosophila melanogaster 50 pUf68 FBgn0028577 FBtr0072710,FBtr0072707,FBtr0072709,FBtr0072708 3 4 4 158 3L 1498415 1498433 GATCCTCTACTGCAAGCTG 59 1498213 1498295 GTAATAGATCGACCCACTCTC 59 NA Drosophila melanogaster 50 CG9205 FBgn0035181 FBtr0072621 2 1 2 237 3L 1035448 1035564 CAATGTGATGAAGGGATGG 58 1035765 1035783 CCTCAGCTTTACCGTATCG 59 NA DesignRelaxed Drosophila melanogaster 50 trio FBgn0024277 FBtr0072645,FBtr0072644 3 2 6 182 3L 1024401 1024477 GAAACCAAGCAGATTTGGG 59 1024237 1024255 AAAGCTAGCCAGTGAACAG 59 NA Drosophila melanogaster 50 Glut1 FBgn0025593 FBtr0112911,FBtr0072617,FBtr0072616,FBtr0112909 2 4 6 80 3L 982228 982246 CCTGCATCTCTATGGTCTG 59 982288 983865 TCGATCATTTCCTTGATCAGG 59 NA Drosophila melanogaster 50 CG13885 FBgn0040689 FBtr0100297 1 1 1 152 3L 391609 391627 CTATACACTCGCATCACCA 58 390988 391495 GCACTTCATAACTGTAGTAGG 57 NA Drosophila melanogaster 50 mthl10 FBgn0035132 FBtr0072573 1 1 2 77 3L 335275 335293 TAATTGCGAGTGAGAACAG 57 335171 335189 TATAGTTGGACCAAGCACG 59 NA DesignNoJunction Drosophila melanogaster 50 RhoGEF3 FBgn0035128 FBtr0089651,FBtr0089654,FBtr0089653,FBtr0089652 2 4 4 82 3L 302289 302366 CCATTTGTGATGGTTACCTG 58 302411 302429 GTTGGAGAAGATAAGCCGA 59 NA Drosophila melanogaster 50 Mtch FBgn0027786 FBtr0072477,FBtr0072478,FBtr0072479 2 3 3 123 3L 185191 185209 AAATTGGTGGGTTCTCTGG 59 185296 185377 ACTGGACGTACAATTCCTC 58 NA Drosophila melanogaster 50 snoRNA:Psi18S-1347b FBgn0083053 FBtr0113514 1 1 1 74 2R 14030551 14030572 GACTAAGATTCATAGTTGCCAG 58 14030607 14030625 GTTATGCAGATGGTATGCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Peb FBgn0004181 FBtr0072454 3 1 1 60 2R 21063728 21063748 ATCCATTAGGTCCTTATTGGC 59 21063688 21063707 ATCGGTGGAGAATTAATTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12849 FBgn0035068 FBtr0072376 3 1 1 132 2R 20685629 20685647 TACTTGAAGTCCGTGAACC 59 20685792 20685810 CAAAGTTGTACAGGACTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG4763 FBgn0034910 FBtr0072238 1 1 1 97 2R 19711252 19711270 TATATTCGACGACCTCCGA 59 19711077 19711191 AGATGGTGATTCCAACTCC 58 NA Drosophila melanogaster 50 Gr59e FBgn0041233 FBtr0072115 1 1 1 170 2R 19428830 19428848 TGCAGAGGACCATTAATCG 59 19428618 19428636 TTAGCGACTTATTGCCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 bw FBgn0000241 FBtr0114457,FBtr0072117 3 2 2 187 2R 19425227 19425302 GCATCTGTACTTTATGTCCC 58 19425059 19425077 ATATGGGATCGGTGATCAG 58 NA Nonspecific Drosophila melanogaster 50 CG5360 FBgn0034873 FBtr0072058 1 1 1 92 2R 19412965 19412983 TTTCGACCATCTCACAGTC 59 19413036 19413119 GTTAAGATTGTAGCTCAGTCCA 59 NA Drosophila melanogaster 50 CG9861 FBgn0034844 FBtr0072002 1 1 1 147 2R 19212393 19212412 ACTGCATTCGATACTTACCG 59 19212575 19212665 CTGTGGAATCCGTCTTCTC 59 NA Drosophila melanogaster 50 CG30196 FBgn0050196 FBtr0071927 1 1 1 60 2R 18542536 18542554 TCAATCACTACTGCAGCTC 59 18542494 18542514 TACCAACTCAGAGTGATATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4329 FBgn0034745 FBtr0071939,FBtr0071940 2 2 2 60 2R 18497748 18497767 TGTCTTGCAGAAGAAATTCG 58 18497707 18497727 AACTTCCTCTAGGAGATTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vrp1 FBgn0034695 FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104 3 7 7 89 2R 17998431 17998841 CAACCTAAATATCTCGTTAGGC 58 17998363 17998383 GTTAGACTGCTGTTTAAGGAC 58 NA Drosophila melanogaster 50 CG34029 FBgn0054029 FBtr0100084 2 1 1 62 2R 17858384 17858402 AGGATCTTCGATCACAGAG 58 17858340 17858358 AAGTCATCCACGATTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13492 FBgn0034662 FBtr0071741,FBtr0071742 2 2 2 93 2R 17715211 17715301 AGACACGCATCATAAGTGG 59 17715136 17715154 CAGTTTCCTGTTCCATCGA 59 NA Drosophila melanogaster 50 CG10527 FBgn0034583 FBtr0071541 3 1 1 131 2R 16959140 16959158 GATGGGAGAACACCAAGTC 59 16959027 16959045 TGATGACATTGTCGTACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpr FBgn0040726 FBtr0086238 3 1 1 102 2R 16613623 16613642 CTACTTCGACTTTGATGTGC 58 16613707 16621683 CCAAGAGACGTCCTTATCG 59 NA Drosophila melanogaster 50 Obp57b FBgn0043534 FBtr0086293 1 1 1 60 2R 16392057 16392076 TTAAATGTCAGCTGGAAAGG 58 16392099 16392117 AAATCCATTCTGCCTTGAG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 hrg FBgn0015949 FBtr0111010,FBtr0086484,FBtr0086483 3 3 3 89 2R 15554704 15554782 AAGATTTCAAGTCTGGGATCC 59 15554635 15554654 GAATTCTGTTGTGGGTATGC 59 NA Drosophila melanogaster 50 CG15120 FBgn0034454 FBtr0086463 3 1 1 66 2R 15387273 15387291 GCAATTAATATTGCCGCTG 57 15387431 15387449 CAATGTCGTGCACATTACC 59 NA DesignNoJunction Drosophila melanogaster 50 mei-W68 FBgn0002716 FBtr0086461 2 1 1 145 2R 15345799 15345817 TGACAATCCTCTGCTAGTC 58 15345984 15346002 TCATCAGCAGCCTTAAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30121 FBgn0050121 FBtr0086644 1 1 1 60 2R 14628012 14628031 ACAGTCCTTGAGATGTTTCC 59 14627971 14627989 GTTCAGGTTCTGTCAGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10933 FBgn0034264 FBtr0086860 3 1 1 95 2R 13611393 13611471 GGTCTAAGTCCTGATTCCA 57 13611529 13611548 GATATTAACCAGCTGTCCAC 58 NA Drosophila melanogaster 50 CG4945 FBgn0034137 FBtr0087100,FBtr0087099,FBtr0087098 3 3 3 132 2R 12454486 12455296 GAATTGGAGAAGATCCAGC 57 12455392 12455410 GTTTGGGTACAGCTTTCAG 58 NA Drosophila melanogaster 50 mrj FBgn0034091 FBtr0087193,FBtr0087196,FBtr0087194,FBtr0087195 2 4 5 150 2R 12093319 12093419 GAAGTGAAGAAGGCATATCG 58 12092510 12092528 ACTCATCGTATATGCGACG 59 NA Drosophila melanogaster 50 CG34365 FBgn0085394 FBtr0112590 3 1 4 169 2R 11304328 11306865 CTTCCAAAGGTTCTTCGGT 59 11306998 11307016 GAATGCCTCGTTCAAACTG 59 NA Drosophila melanogaster 50 RpI1 FBgn0019938 FBtr0087511 3 1 1 81 2R 10487797 10487871 TATTAAAGAACGCGTTGGC 58 10487734 10487752 CAGATAACGACGACATTCG 58 NA Drosophila melanogaster 50 CG17389 FBgn0033938 FBtr0087490 2 1 1 144 2R 10337028 10337294 TTTACTCAGCAATCAACACC 58 10337401 10337419 CTCTCAGTCTCTTCGACAG 58 NA Drosophila melanogaster 50 CG6329 FBgn0033872 FBtr0087634,FBtr0087633,FBtr0087635,FBtr0087636 2 4 4 142 2R 9717361 9718064 TGCATACAAGTGACCACTG 59 9718168 9718188 TATTTGTCCTTCAGATGCTCC 59 NA Drosophila melanogaster 50 CG6197 FBgn0033859 FBtr0087623 2 1 1 139 2R 9483353 9483434 CATTGCTCACAGGTTTGTG 59 9483537 9483555 GTATTGTAAGTGGCCTGCA 59 NA Drosophila melanogaster 50 CG33528 FBgn0053528 FBtr0091491,FBtr0091492,FBtr0091493 2 3 3 115 2R 9407613 9407631 CTTTAACGTCCAACGTTCC 59 9407452 9407536 GTAATAGGTCTCGTTCTCCTC 59 NA Drosophila melanogaster 50 CG30061 FBgn0050061 FBtr0087711 3 1 1 82 2R 9324201 9324219 GAACCATTTGGGATCATCG 58 9324137 9324155 AGTGTCGAAACCATGAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17041 FBgn0033822 FBtr0087749,FBtr0087751,FBtr0113080,FBtr0087750 1 4 4 221 2R 9151042 9151060 ATAATGTGGCAAGACCCTC 59 9151379 9151397 GTTCTCAATGGTGTTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4712 FBgn0033818 FBtr0087757,FBtr0087758 3 2 2 157 2R 9136975 9136993 GATGTAGAAACGGTTTGCG 59 9136767 9136787 CGATTGTGCTTAGTCATATGC 59 NA DesignNoJunction Drosophila melanogaster 50 Nmda1 FBgn0013305 FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876 2 6 6 91 2R 8765640 8765660 CGAACTTCATATTCTTGGGTC 58 8765511 8765587 CATGAGAACCTCTTTCGGA 58 NA Drosophila melanogaster 50 CG8776 FBgn0033764 FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869 3 5 5 98 2R 8548250 8548271 CATAAGGTCAACTTCTATAGCC 58 8548117 8548192 TACCAGAAAGCTGAAGAAGC 59 NA DesignRelaxed Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930 1 5 6 105 2R 8335509 8335527 ATCATAACCTCAACAAGCG 57 8335595 8335676 GAGTTATCACTTGTGTACGC 58 NA Drosophila melanogaster 50 CG8520 FBgn0033734 FBtr0087926 2 1 1 124 2R 8311501 8311519 ATCAGGATGATCCTAACGC 58 8311604 8311682 CTTTCGATGAATTTGGGTACAG 59 NA Drosophila melanogaster 50 SIP2 FBgn0061197 FBtr0089669,FBtr0089671 3 2 4 179 2R 8191213 8191231 TAATCTCTACGGGACCCTC 59 8190827 8191070 TTGGCATAATTACGGAGGG 59 NA Drosophila melanogaster 50 Tango3 FBgn0033651 FBtr0088065,FBtr0088066 1 2 2 60 2R 7676018 7676037 GGAATGTGGGTCAGTATCTC 59 7675977 7675996 AAAGATAATTCCCGGTTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7777 FBgn0033635 FBtr0088136,FBtr0088137 1 2 2 244 2R 7327365 7327484 CTCAATGAGCTCAAATCCA 57 7327753 7327771 ATCAAGCTAATTCGTCCTG 57 NA DesignRelaxed Drosophila melanogaster 50 BBS4 FBgn0033578 FBtr0088202 1 1 1 91 2R 7023914 7024339 CGAACACTATACATAATGGGC 58 7024392 7024410 TAAATCTCGTGGTCCTGTC 58 NA Drosophila melanogaster 50 CG12943 FBgn0033572 FBtr0088198 2 1 2 84 2R 6792307 6792325 TGGAATCATCGGCTATTGG 59 6792372 6792512 CTGGGAAAGGATTTCATCCT 59 NA Drosophila melanogaster 50 CG7220 FBgn0033544 FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217 2 5 5 110 2R 6624696 6624714 CATGTTGAGTAGTTGTCGC 58 6624788 6624871 ACAGAATCATCGTGGTACC 59 NA Drosophila melanogaster 50 Ndg FBgn0026403 FBtr0088349,FBtr0088350 3 2 2 117 2R 6208455 6208474 CAAAGGATACCATTGAGGTG 58 6208554 6208634 AACAGTTTCTCCCTGTAGG 58 NA Drosophila melanogaster 50 Or46a FBgn0026388 FBtr0088330 1 1 2 81 2R 6028117 6028138 GAGGATTAGGACACTTAATCCA 59 6029494 6029512 GAAGTAGCTGTAGGAGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1407 FBgn0033474 FBtr0088436,FBtr0088435 2 2 2 99 2R 5919790 5919808 ATGCTTCTGTTCTACCACC 59 5919621 5919728 GTATCCTCCATTGATCTGGT 58 NA Drosophila melanogaster 50 CG18446 FBgn0033458 FBtr0088376 2 1 1 60 2R 5759618 5759637 ATAACACCCTTTGTTCAGTC 57 5759660 5759678 ATAAGTGCTGATCTGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pkn FBgn0020621 FBtr0112897,FBtr0088602,FBtr0088604 3 3 6 100 2R 5144983 5145001 TATCTGTATCGTGGTAGCA 57 5143201 5144919 AACTGTGGTATAACCTCCA 57 NA Drosophila melanogaster 50 ltd FBgn0002567 FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934 2 5 5 110 2R 5066194 5066212 ATGGATGAGTATGTGAGGG 58 5066041 5066123 GATGAGTATCTTATTCACGAGG 57 NA Drosophila melanogaster 50 CG8736 FBgn0033308 FBtr0088731 1 1 1 60 2R 4482463 4482483 GAACCCAATTGGAAGTTTGAG 59 4482423 4482442 CTTATGGTAATCCTTGCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sPLA2 FBgn0033170 FBtr0088972,FBtr0088973,FBtr0100138 2 3 3 151 2R 3330818 3330836 CGAGATTATCGAGTCCCAC 59 3331016 3331036 CATAGTAGATACGACCCAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111051 1 1 60 125 2R 3219880 3228062 CTGATTGTGAACGTACCTC 57 3219773 3219792 TTTCTTCCATGTAACTTGGG 57 NA Drosophila melanogaster 50 Spn43Ab FBgn0024293 FBtr0100356,FBtr0089054 2 2 2 87 2R 3039482 3039501 ATTTCATTAACGCAGTGGAG 58 3039348 3039434 CCTTTAAGCAATCCAGTTTCC 59 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086205,FBtr0086204,FBtr0086197,FBtr0086201,FBtr0086196,FBtr0086198,FBtr0086202,FBtr0086199,FBtr0086200,FBtr0086203 3 10 11 117 2R 2764992 2765010 GTACGAAACAAAGGTAGCG 58 2764829 2764847 AAATTCAGCCTGATCGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9422 FBgn0033092 FBtr0086120,FBtr0086121 2 2 2 101 2R 2579670 2579690 TATAGTCACACGCCAAATACC 59 2579808 2579827 AAATCAGTGGACGTATTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG30432 FBgn0050432 FBtr0086002 1 1 1 60 2R 2085641 2085662 GGTTGGGATTATATGTTTGGTG 59 2085602 2085620 GTCATTGAGACGATAGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11163 FBgn0025693 FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053 3 4 4 80 2R 1662572 1662645 TGCATCTCGTTACAGACTC 59 1662510 1662530 TATATCTTGGGCTGGATACGA 59 NA Drosophila melanogaster 50 CG30441 FBgn0050441 FBtr0086093 2 1 1 133 2R 1239541 1239559 TCCAAACCTTTCCAGTAGC 59 1239426 1239444 CCTTATCGACATCTTTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR33319 FBgn0053319 FBtr0089858 3 1 1 60 2L 20929336 20929357 TTATAGACTCGACTATGTGGAG 58 20929375 20929396 TACCTTATGTAATAGACGGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snRNA:U2:38ABa FBgn0003922 FBtr0081313 1 1 1 61 2L 19815772 19815793 CCTTATGGCTAAGATCAAAGTG 58 19815732 19815753 GAGGAACTATCAGATGTTAAGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 snmRNA:158 FBgn0065104 FBtr0091750 3 1 1 60 2L 5206233 5206251 AAGAAGGATCACTCTACCC 57 5206274 5206293 CTATCCCATCTAACCCTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cht3 FBgn0022701 FBtr0111127 3 1 1 86 2L 22896777 22896798 GCTATTAATCGTGTACTCAGAG 58 22896655 22896730 GATGTTTGGCTTCATTGTG 57 NA Drosophila melanogaster 50 CG2201 FBgn0032955 FBtr0100510,FBtr0085921,FBtr0085922,FBtr0100511,FBtr0085923 3 5 5 85 2L 21615152 21615171 CTGTCTCATCTGTTCTGGAG 59 21615024 21615105 CGAGCAATACCATATTCCCA 59 NA Drosophila melanogaster 50 CG31673 FBgn0051673 FBtr0081422 1 1 1 102 2L 20830522 20830543 CCACTTACAAACGAAACTAGAG 59 20830605 20830682 GATTTACCAGACCTCCTCTG 59 NA Drosophila melanogaster 50 CG1962 FBgn0032876 FBtr0081399,FBtr0081400,FBtr0081401 1 3 3 60 2L 20680493 20680513 ATAGTGGTGCGGATTATAAGG 59 20680453 20680471 CTAGAGTTGGGATTGAGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arc-p34 FBgn0032859 FBtr0081358 1 1 1 80 2L 20420827 20420910 GAGACTTTATATGTGGAAGCCA 59 20420951 20420969 AATGACATCGTCTTCGTCC 59 NA Drosophila melanogaster 50 Ugt37a1 FBgn0026756 FBtr0081372 2 1 1 60 2L 20373712 20373730 GTCCTGAAGGACCAAAGAG 59 20373670 20373688 CCAAATCGAAGTGGTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 La FBgn0011638 FBtr0081373 2 1 2 108 2L 20349027 20349045 TACATTGAGTTCGCCAAGG 59 20348866 20348955 CTTTGAACTTGAGCTTGCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG41073 FBgn0069950 FBtr0100266 3 1 1 113 2L 20231625 20231757 CTGGATTTAGCGTAGTCCA 58 20231452 20231471 TAGCATAATTCAGGCAACAG 57 NA Drosophila melanogaster 50 sNPF FBgn0032840 FBtr0081327,FBtr0081326 1 2 2 92 2L 20055044 20055062 GAAGTCCGTAAACCAATGC 59 20055184 20055202 GATGGATGAGGTTTCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Ddc FBgn0000422 FBtr0081167 3 1 3 76 2L 19119324 19119342 GATAAGCTGGATCCCAAGG 59 19119189 19119207 AAGTCGACCATTGTCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Irk3 FBgn0032706 FBtr0114486,FBtr0081125 3 2 2 65 2L 18712026 18712045 CATCGAGTCCAAGATACGAG 59 18711710 18711728 TTTATAGTCTCACCCTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 PFE FBgn0032661 FBtr0081029 2 1 1 80 2L 18062552 18063813 GCGGATATTAGATCTGTCCA 58 18063856 18063874 AATTCCAGTAGGTTGTCCT 57 NA Drosophila melanogaster 50 CG15145 FBgn0032649 FBtr0080991 3 1 1 104 2L 17531715 17531733 AGGATGAAACCACTCAGAC 58 17531557 17531575 TGAACAGTTCTAGGGTACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13282 FBgn0032612 FBtr0080929 3 1 1 136 2L 16833456 16833475 CCGATATGTTTCTACATCCC 57 16833199 16833217 GTGCTTGGTGTTATGAACG 59 NA DesignNoJunction Drosophila melanogaster 50 CaBP1 FBgn0025678 FBtr0080837 3 1 1 66 2L 16355700 16355718 GATATTGTATCCTGGGCCA 58 16355652 16355670 TAATCTCGATGAGTTCGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tim17b2 FBgn0020371 FBtr0089700 2 1 2 83 2L 15486434 15486452 AGTTCCGACATATGTGAGC 59 15486497 15490712 TCCTCAACTATTAGCTTCGAC 59 NA Drosophila melanogaster 50 CG15263 FBgn0028853 FBtr0080729 1 1 1 60 2L 15285071 15285091 ATACTGCTTTACCGTAGTTCC 59 15285113 15285131 CATATTCTCCTCCGCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31829 FBgn0051829 FBtr0080750 2 1 1 60 2L 15269412 15269430 GAAATAGCACGGAAGTACC 57 15269370 15269388 TAACATTGAATGCCCTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16826 FBgn0032505 FBtr0080464 1 1 1 60 2L 13348201 13348222 CAATACCGTCGTAAATGATCTG 59 13348241 13348261 CTCGTCTATCCGATCATTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31730 FBgn0051730 FBtr0080480 3 1 1 60 2L 13259305 13259323 GGAGCTTCCTATGTTAACC 57 13259263 13259281 TGTACAATTGATAGGCAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15484 FBgn0032452 FBtr0080406 2 1 1 60 2L 12707425 12707446 CTATGAACTGAGGAAGAAAGAG 57 12707386 12707406 AAGCTCATAGGTATGAATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bun FBgn0010460 FBtr0111003 1 1 6 87 2L 12477159 12498535 GATTTCATCGGTGCATCTG 58 12458199 12458217 TCATGAGATGCGACTTGAC 59 NA Drosophila melanogaster 50 CG31759 FBgn0051759 FBtr0080349,FBtr0080348 1 2 2 60 2L 12208526 12208545 TGCAGGTATTAGATACGGTC 58 12208567 12208586 TTTAGGGATGAAATCCACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14931 FBgn0032374 FBtr0080256 1 1 1 60 2L 11788906 11788924 GTGTCCAGAAGAAATCCCT 58 11788948 11788966 AAGTTATACGGATCGGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hgo FBgn0040211 FBtr0080201 2 1 1 101 2L 11137693 11137776 ATGTAAAGGACTTCCAGGT 57 11137841 11137859 CATAGTTACCATGCCAAGC 58 NA Drosophila melanogaster 50 Grip75 FBgn0026431 FBtr0080033 1 1 1 80 2L 10483565 10483585 CAAGAAGTTGAGCAGTTTACC 59 10483625 10483703 GTAACCATGCAAACTATCTGG 59 NA Drosophila melanogaster 50 cdc2 FBgn0004106 FBtr0080051 2 1 1 98 2L 10385157 10385175 TGACTCGGAAATTGACCAG 59 10385020 10385038 TTCTTATAGTCGGGTAGCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5096 FBgn0032235 FBtr0080006,FBtr0113034 2 2 2 130 2L 10383792 10383875 TTGGCGACAATGTATTTCC 58 10384031 10384050 GTCGGACAATATCAGTTCAG 58 NA Drosophila melanogaster 50 CG34043 FBgn0054043 FBtr0100098 1 1 1 89 2L 10280114 10280133 AGAATACAGAGATTGCGGAC 59 10279678 10280063 ATTCCTCCACTATTTCTGCG 59 NA Drosophila melanogaster 50 CG18619 FBgn0032202 FBtr0089735,FBtr0089736 2 2 4 90 2L 10264812 10264830 GGTATCAGTACCTGGAGGA 59 10264884 10264959 TCCATTGAATTAACGACGC 58 NA Drosophila melanogaster 50 eEF1delta FBgn0032198 FBtr0079951,FBtr0079952 2 2 2 60 2L 10234095 10234114 CAAGTCGAACATCATTCTGG 58 10234135 10234155 CATAACCTTCAGATCGGTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4594 FBgn0032161 FBtr0079878 1 1 1 114 2L 9920742 9920760 TGCAGAATGTATGGATTGC 58 9920891 9920909 ATCACTCGATACTCACAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13097 FBgn0032051 FBtr0079697 1 1 1 73 2L 8512857 8512875 ACAATCACCAAGAATCGCA 59 8512696 8512714 TTTGAGGACTTCAGAGCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7429 FBgn0031979 FBtr0079540 2 1 1 180 2L 8041588 8041608 CTGTGAAGATCAACGTTACAG 58 8041810 8041828 AAGATCAGATCACGCTCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 pes FBgn0031969 FBtr0079553,FBtr0114550,FBtr0079552 2 3 3 88 2L 7988318 7988403 CCGGGTATTACCTTGTATGAG 59 7988250 7988268 GCAATTTCCTCTGATACGC 58 NA Drosophila melanogaster 50 Snoo FBgn0085450 FBtr0112719,FBtr0112721,FBtr0112718 2 3 5 109 2L 7975259 7975277 AATACCAGATCATCCTCGA 57 7896734 7896752 GTCATCCATGAGCATTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13793 FBgn0031935 FBtr0079508 3 1 1 88 2L 7718817 7718835 CTTAAACTCCTTTCGACCC 57 7718662 7718765 CTTCCTCAGTCCATTTAGC 57 NA Drosophila melanogaster 50 CG5177 FBgn0031908 FBtr0079441 3 1 1 153 2L 7405677 7405695 GAGGTTGAGTATCCTTCCG 59 7406039 7406057 TGTAGTGATAGGTCACGGA 59 NA DesignNoJunction Drosophila melanogaster 50 Gas41 FBgn0031873 FBtr0079364 1 1 1 60 2L 6949718 6949736 CTCTAGCACCACTATGGAC 58 6949676 6949696 CACTATTTCCTCATACGACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31635 FBgn0051635 FBtr0113410,FBtr0079326 1 2 2 115 2L 6639475 6639493 GAGTCAGAATCGGTAGCTG 59 6639317 6639399 TCTGTTGAGGGAGTAATATCAC 59 NA Drosophila melanogaster 50 Pez FBgn0031799 FBtr0079284 1 1 1 80 2L 6333905 6333924 CAGCTAACCGAGGATATGAG 59 6333790 6333864 TTCCTGATACACTTGGAACTG 59 NA Drosophila melanogaster 50 CG9175 FBgn0031779 FBtr0079212,FBtr0079211 3 2 2 146 2L 6097430 6097448 ACTCCATGTTCGTAACTGG 59 6097245 6097320 GGATTGTACGTCTTTGGGA 59 NA Drosophila melanogaster 50 CG14010 FBgn0031725 FBtr0079116 1 1 1 134 2L 5604602 5604620 ATGTGGAGAACTTTGAGGC 59 5603162 5603915 GACTCAAATCGGCTTTCCT 59 NA Drosophila melanogaster 50 eIF-3p40 FBgn0022023 FBtr0079031,FBtr0079030 1 2 2 250 2L 5051655 5051673 TAACAAGTACCAGCAGGTG 59 5051357 5051375 TGATGAAGAGTTTGGCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31650 FBgn0031673 FBtr0079034,FBtr0079035,FBtr0079033 1 3 3 87 2L 5041718 5041736 ATTTATTGACCGGCATGAG 57 5041500 5041518 TTCTTCAAATCGATCAGCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11927 FBgn0031638 FBtr0077386 3 1 1 60 2L 4848133 4848151 CCAGGACAGGAACTATCCT 59 4848175 4848193 GTTCATCAGCTGCATAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3225 FBgn0031631 FBtr0077416 3 1 1 129 2L 4815850 4815929 CCTTAATGATAGGTGTGAAACG 59 4815742 4815760 TGATGATGTTTCAGGGACG 59 NA InUTR Drosophila melanogaster 50 CG3921 FBgn0031571 FBtr0077496 3 1 1 80 2L 3800323 3800341 TCGTCACAATTATTGGAGC 57 3800383 3800466 AGTAGCATAGGATCATCTGAC 58 NA Drosophila melanogaster 50 CG34394 FBgn0085423 FBtr0112638,FBtr0112641,FBtr0112639 1 3 4 80 2L 3363352 3363370 GTGTTAATGCAGGCATTCC 59 3363179 3363309 TGTGATCATCGACAGTTCTG 59 NA Drosophila melanogaster 50 CG31689 FBgn0031449 FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706 3 4 4 83 2L 2738710 2738728 AGGAGACCTTCAACAACTG 59 2738773 2738878 AGAAGATGATATGGACTGGTG 58 NA Drosophila melanogaster 50 CG7082 FBgn0031401 FBtr0077836,FBtr0077838,FBtr0077837 1 3 4 97 2L 2223617 2223708 GCCAAGATAAGATTACGAGAC 58 2223767 2223785 TTGATAAGCAGAGCTCGAG 59 NA Drosophila melanogaster 50 mio FBgn0031399 FBtr0077835 3 1 1 81 2L 2219095 2219169 TATGCTACAGGAGTGAGCA 59 2219213 2219232 TCTATAAAGCGATCCAGCTC 59 NA Drosophila melanogaster 50 lea FBgn0002543 FBtr0077941 1 1 1 80 2L 1387518 1390902 CTTGAAGATGTTCCCTCTG 57 1387456 1387474 CTTCCATTTGAGGAAGACC 57 NA Drosophila melanogaster 50 drongo FBgn0020304 FBtr0078035,FBtr0078036,FBtr0078037 1 3 3 111 2L 836547 836565 TCCCATCTACAATGCAGTG 59 835456 835474 CTTAAGAGCGGCATATCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 1 7 8 80 2L 119224 119297 TATAATGCAGACTGATGTCCTG 59 119165 119184 TTTCCCAACTTCAAGTTTGC 59 NA InUTR Drosophila melanogaster 50 l(2)gl FBgn0002121 FBtr0078166,FBtr0078171,FBtr0078170,FBtr0078167,FBtr0078168,FBtr0078169 1 6 6 80 2L 14976 14996 ATTATGTGCCTTATGGACCTG 59 14858 14937 CAATTACATCGTTGGATCTTCG 59 NA Drosophila melanogaster 50 CR34311 FBgn0085340 FBtr0112509 1 1 1 66 X 20254717 20254794 GAATACTGAACTCAAAGAAGCG 59 20254672 20254690 GGTATCGCAGTTAGATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR33963 FBgn0053963 FBtr0100004 3 1 1 60 X 12553622 12553641 GTTTCTCGTGTATCTTGTGG 58 12553664 12553682 AGGGAATGTAAGTTGACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41480 FBgn0084040 FBtr0111184 3 1 1 94 X 22208785 22208803 CGGTCAATTGATGTCTGGA 59 22206727 22208728 TTAAAGGATCATCCATGGCA 59 NA Drosophila melanogaster 50 CG1529 FBgn0031144 FBtr0114624,FBtr0077267 2 2 2 112 X 20901394 20901412 CTAGAGCAGGAAGATGCAC 59 20901300 20901320 GGGATAGGTTTGTAGTCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1532 FBgn0031143 FBtr0077268 1 1 1 86 X 20898977 20899222 AATCTTGGGAATGACGGTG 59 20898851 20898869 CTCCACCGATTGTCATAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7332 FBgn0030973 FBtr0074647 1 1 1 98 X 18780687 18780705 TGGAGGAAATGCGTTACTG 59 18780766 18780877 TGAACAGAACGGTTAAATGC 59 NA Drosophila melanogaster 50 bnb FBgn0001090 FBtr0074659,FBtr0074656,FBtr0074658,FBtr0074657 1 4 4 62 X 18689036 18689054 GATGAGTCCTCAGAGTCCA 59 18688992 18689012 CTATTCCTAGTTCTCCTTCGA 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7135 FBgn0030895 FBtr0074515 1 1 1 95 X 17998531 17998549 CATAACGTGCTCAATCACG 59 17998605 17998785 GAAGTCAATAATCTTCACCTGC 59 NA Drosophila melanogaster 50 dik FBgn0030891 FBtr0074510 3 1 1 65 X 17980256 17980274 ACAGATGCTCTCCAATGTG 59 17980302 17980321 TTGTCGAGGCTATCATACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8557 FBgn0030842 FBtr0074434,FBtr0074435 2 2 2 137 X 17357736 17357754 CTGATTGTACCCATGTTGC 58 17356148 17357638 CTTGTAATCATTGACTAGTCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9125 FBgn0030793 FBtr0074352 1 1 1 60 X 16696487 16696593 CAGTTGACTTCAAAGATTGC 57 16696446 16696464 CTGGTCTTTAGCTCTACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mei-41 FBgn0004367 FBtr0074271 2 1 1 132 X 16293291 16293309 GACCCTGATGTCCATTCTG 59 16293405 16293487 CTGTCGTTTAACGTGTCCT 59 NA Drosophila melanogaster 50 sl FBgn0003416 FBtr0074230 1 1 1 112 X 16246748 16246831 ATGGGAAACTTGAAGGTGG 59 16246907 16246925 ATAGTCTCCCACAAACGTG 59 NA Drosophila melanogaster 50 CG15916 FBgn0030704 FBtr0074117 2 1 1 60 X 15785441 15785460 TTATGGACAAGATTCTCGGC 59 15785482 15785501 TGTCTATGATTAACCCAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15914 FBgn0030700 FBtr0074105 3 1 1 84 X 15747910 15747981 GATACTCTCCTGTCTTGCC 59 15748028 15748047 AAAGGGCTGAACATTATCCA 59 NA Drosophila melanogaster 50 acj6 FBgn0000028 FBtr0074016,FBtr0100326 1 2 4 93 X 15272252 15272270 CTCCTATCGAAGTTCGGAG 58 15265710 15271601 GAAGATATCACCCTCGAGAG 58 NA Drosophila melanogaster 50 CG5548 FBgn0030605 FBtr0073960 3 1 1 108 X 14958435 14958455 AGACTTAGGCTAGATAACCCT 59 14958525 14958543 AAACTAGCTTGCAACATGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG32613 FBgn0052613 FBtr0073887 1 1 1 60 X 13845391 13845409 CTTCGCTATGGCTTAGACC 59 13845349 13845369 GACTGAATGACTGACAAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4407 FBgn0030431 FBtr0073696,FBtr0073695 1 2 2 220 X 12796462 12796480 CAGTTGGTTCAGTACGAGG 59 12795796 12795814 TTCAAGTGGATGTAGTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4661 FBgn0030429 FBtr0073699 3 1 1 60 X 12750346 12750364 AGATGAACGTGAAATCGGT 59 12750304 12750322 CACATTGGCATGAATTACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32656 FBgn0052656 FBtr0089803 1 1 1 60 X 11958110 11958128 CCCTGGATCATCTGTTCTG 59 11958151 11958170 AGGAATCGATGGTACAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10347 FBgn0030342 FBtr0073602 2 1 2 190 X 11747589 11747608 GAATTGTCACTAACCAAGGC 59 11747359 11747436 GTCAAATTGAAGCGTACCA 58 NA Drosophila melanogaster 50 CG2247 FBgn0030320 FBtr0073536 2 1 1 80 X 11501984 11502060 TCATGACGATGAAGGATCG 59 11501922 11501942 GCCATACACTCTTATCCTGAC 59 NA Drosophila melanogaster 50 CG11752 FBgn0030292 FBtr0073452 3 1 1 93 X 11244371 11244389 ATACTACAGCTTCAATCGC 57 11244446 11244464 CTACATCTACTTGAGGGCC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 sisA FBgn0003411 FBtr0073461 1 1 1 215 X 11216298 11216316 GGAGTCATCTTTACTTGCC 57 11216101 11216119 GATTCTCCAGGAGCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34339 FBgn0085368 FBtr0112541,FBtr0112542 2 2 2 131 X 9319485 9366040 GATCACCAGGTAAATACACTC 57 9319374 9319392 TCCCTACATTCCCTTACTC 57 NA InUTR Drosophila melanogaster 50 CG15324 FBgn0029966 FBtr0071087 2 1 1 60 X 7769355 7769375 ACACTTACTATCCCTATGGAC 58 7769396 7769415 GCAGTATAGTAGACAGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32736 FBgn0052736 FBtr0071008 1 1 2 98 X 6905778 6905857 AGACCAATTTCTACCGCAC 59 6905918 6905937 CTTAGTTGGTGTTATTCGCG 59 NA Nonspecific Drosophila melanogaster 50 CG15767 FBgn0029809 FBtr0070813 2 1 1 60 X 5684249 5684267 ATGCCCGATGAATACTTCG 59 5684291 5684309 CAAAGTGCAGAACAATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2713 FBgn0024978 FBtr0070497 1 1 1 178 X 2625007 2625025 ATCATGTGAAGAACCTGGA 58 2624729 2624807 CTGCGCAATTATCTTTAGGA 58 NA Drosophila melanogaster 50 CG2658 FBgn0024992 FBtr0070503,FBtr0070502 1 2 2 130 X 2590887 2590964 CAGCATGGATTCATTTAACC 57 2590776 2590794 CAAATTCCTTCACCTCCTG 58 NA Drosophila melanogaster 50 pcx FBgn0003048 FBtr0070395 1 1 1 80 X 2129478 2129496 GAGTAGGTGGCGTTATCAG 59 2129540 2129621 AGTCGTAAATCCCAGTGTC 58 NA Drosophila melanogaster 50 Gr2a FBgn0027796 FBtr0114515 1 1 1 97 X 1347990 1348057 CTCTATACGATCGTGGGAG 58 1348118 1348136 TACTGTCCGTTGGAATCAC 59 NA Drosophila melanogaster 50 fs(1)N FBgn0004650 FBtr0070207 3 1 1 87 X 1219207 1219284 GAAGAATTGGAGCTCAATGG 58 1219334 1219352 TGATAACACGTGACTCCAG 59 NA Drosophila melanogaster 50 Cyp4g1 FBgn0010019 FBtr0070099 3 1 1 60 X 363171 363190 CAGTCCTATGTTAACCACCT 58 363130 363148 CCAATACTCGTACAATGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR41539 FBgn0085796 FBtr0114250 1 1 1 60 U 9757594 9757613 TGAAGATTGAGATAGTCGGG 58 9757636 9757654 CAGAACGAGCACATAAACC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40867 FBgn0085529 FBtr0113942 2 1 1 200 U 9327269 9327287 AATCCCATTGGATACTGGC 59 9327087 9327105 TTTGCCTTGTATCACAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41584 FBgn0085709 FBtr0114158 1 1 1 60 U 7412861 7412879 GTTGATGTTGACCAGTGGA 59 7412902 7412921 GGTTCCACTGAACTGTACTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17626 FBgn0040032 FBtr0113754 2 1 2 61 U 252371 252390 TAACATTATTCGCAACAGCC 58 252411 252432 GTGCATCATACTTGTATACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40092 FBgn0058092 FBtr0113790 3 1 1 76 U 235264 235282 GCAAATCTGCTCTATCTCG 58 235206 235224 AATTTGTTTCGCGGTTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-3186 FBgn0086662 FBtr0091697 2 1 1 62 3R 1423823 1423842 AACACTTGTTCAACTTGCAG 59 1423780 1423800 CAAGAGTCAGTATACCAAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pncr017:3R FBgn0046756 FBtr0091956 2 1 1 62 3R 27594812 27594830 CAGTCGAGAGGTCTTAACC 59 27594853 27594874 CTTCTCTGATATCTTCATTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ttk FBgn0003870 FBtr0085828,FBtr0085826,FBtr0085827,FBtr0085825,FBtr0085830,FBtr0085829 2 6 6 127 3R 27553858 27553876 ACATGATGAACGACTCCTC 59 27553964 27554122 GCGACTTTCATTTAGATCATCC 59 NA Drosophila melanogaster 50 CG12071 FBgn0039808 FBtr0085716,FBtr0085717 1 2 2 160 3R 26705207 26705225 AACTGACCTACAACATCCC 58 26704954 26705083 CTTGTTGGTGGACTTTGAG 58 NA Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634 3 4 5 103 3R 26212311 26213196 AGATTTCAAGTGCTCCCTG 59 26212226 26212244 TGATCTCCTCCTGGATCTG 59 NA Nonspecific Drosophila melanogaster 50 CG15526 FBgn0039744 FBtr0085562 3 1 1 118 3R 25881888 25881987 CTTAAACTTCGGGATCCGA 59 25882069 25882087 AACTTCACGATCTCCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15522 FBgn0039723 FBtr0085503 3 1 1 242 3R 25753836 25753914 GATAACAGGATACTTGCTCG 57 25754118 25754137 TTGAAGATCTCCGTGTTCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14509 FBgn0039647 FBtr0113303,FBtr0113304 2 2 2 148 3R 25004533 25006890 CCAGAGTTCGATTATGCCA 59 25004403 25004421 TCATAGTGATTGGTGACGG 59 NA Drosophila melanogaster 50 Pkc98E FBgn0003093 FBtr0085359 1 1 1 95 3R 24867135 24867327 GAGAGTCACTTCGATCGAG 59 24867386 24867404 GATGTTGCTCACATTGGTC 59 NA Drosophila melanogaster 50 CG5521 FBgn0039466 FBtr0085069 2 1 1 94 3R 22796538 22796617 GGTGTCAGATACTTCTTACTG 57 22796672 22796691 ATAAGACCAGGGATAAGGTC 57 NA Drosophila melanogaster 50 Nf1 FBgn0015269 FBtr0100113,FBtr0084953,FBtr0084952 3 3 3 83 3R 21814618 21814636 AACATATTCTACCAGGCCG 59 21814681 21814754 CGTTTCTCCAATCTTGTATCG 59 NA Drosophila melanogaster 50 CG14546 FBgn0039395 FBtr0084984 3 1 1 60 3R 21747042 21747062 GATAATATTGTCTGCCTTCCG 58 21747002 21747020 GAATTGGACAATTGCGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31436 FBgn0051436 FBtr0084830 2 1 1 93 3R 21130984 21131004 GATGTTCTAAAGAAGATCGGC 58 21131056 21131138 GAAAGAACTCGTAGTACTTGTG 58 NA Drosophila melanogaster 50 CG31111 FBgn0051111 FBtr0084790 1 1 1 60 3R 20881796 20881815 ATTTAAAGTATAAGCGGCGC 59 20881605 20881775 TCCAGTAGATAACTCTTGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13634 FBgn0039224 FBtr0084742 2 1 1 60 3R 20614930 20614948 GTGCAAATTCAGCACTGAG 59 20614888 20614908 AGTAAGATCCGGAAAGATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6695 FBgn0039215 FBtr0089916 3 1 2 129 3R 20483306 20483324 AATATAGTTCCGCTACCGA 57 20484127 20484233 TTATCGGCTTTATATTGCCG 58 NA Drosophila melanogaster 50 Apc2 FBgn0026598 FBtr0084552 3 1 1 100 3R 19992793 19993009 TAATCTTCTAAGTCAGGCCA 57 19993072 19993090 ATAGAGTGCTGGTACTAGC 57 NA Drosophila melanogaster 50 PSR FBgn0038948 FBtr0084239 1 1 1 63 3R 18187712 18187730 CAAGAAGTATCGCAACCAG 58 18187667 18187685 CATCTTGACGCTATAGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slou FBgn0002941 FBtr0084123 1 1 1 153 3R 17380374 17380393 AGAGAACATACTGGATCCGA 59 17375448 17380258 ATTCAAATCCTGGGCAGAC 59 NA Drosophila melanogaster 50 Mvl FBgn0011672 FBtr0089521,FBtr0089522,FBtr0089523 2 3 3 81 3R 16882559 16883305 GCTATGAGTACATTGTATCAGC 58 16882499 16882517 GAATTGCAGTTAGAGCACC 58 NA Drosophila melanogaster 50 CG4390 FBgn0038771 FBtr0083836,FBtr0083837 2 2 2 60 3R 15882337 15882356 CAATGATCACATCCAGACCA 59 15882296 15882315 GTAGAAGTAGCTGTGATCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 P5cr FBgn0015781 FBtr0083713 1 1 1 76 3R 14855602 14855620 GATGAAGTCTGTTCTCCCG 59 14855660 14855739 AAAGTAGACCTGAGGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14302 FBgn0038647 FBtr0083673 3 1 1 205 3R 14558429 14558521 TGAAATTCTTCAACCTGCTG 58 14558689 14558707 AATGGGATAGATGGTCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Atg8b FBgn0038539 FBtr0083533 2 1 1 84 3R 13550370 13550388 TAAACAATGTGATCCCACC 57 13550304 13550324 GAAATGTAGAGGAAGTAGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31269 FBgn0051269 FBtr0113401 2 1 1 60 3R 12953382 12953401 TATACCTTCAGTACGTTCCC 58 12953423 12953442 CAATCTTCATCGTTGCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31275 FBgn0063261 FBtr0083346,FBtr0083345 2 2 2 60 3R 12576907 12576926 ACTATTGGGTATGTGGTGTC 59 12576866 12576884 TATCGAAGGATGTTTCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Scp2 FBgn0020907 FBtr0083361 1 1 1 131 3R 12403086 12404721 GTGTTCTTTGATGTGAACCA 58 12402696 12402714 CATCATCAGGTCGTAGGTC 59 NA Drosophila melanogaster 50 CG14888 FBgn0038442 FBtr0083298 1 1 1 85 3R 12378113 12378131 CTAACCACAACCATCAAGG 58 12378180 12378276 ATCTGTGTATCAGGTGGTC 58 NA Drosophila melanogaster 50 GATAe FBgn0038391 FBtr0083218 2 1 1 103 3R 11844306 11844385 GATAGTTCAGCCAGTACCC 59 11844452 11844470 TATTCGATGATCGCTCTGG 59 NA Drosophila melanogaster 50 Arpc3A FBgn0038369 FBtr0083182 2 1 2 82 3R 11660874 11660895 GCTACTTGCTACTTGAATTCAC 59 11660937 11660956 TAGAGCGTCACATAGATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12207 FBgn0038220 FBtr0082922,FBtr0082921,FBtr0082923 1 3 3 152 3R 10126681 10126702 CCTTAACAAGATAGACAACACC 58 10127024 10127042 TTGTAGGAGTTGTTCAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17327 FBgn0038107 FBtr0082721,FBtr0082720 1 2 2 62 3R 8823316 8823334 TATATCCGTGTCCCTTCGA 59 8823272 8823290 CGTTCGTTTCGAAATTACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33098 FBgn0053098 FBtr0082580,FBtr0082579 1 2 3 122 3R 8213638 8213708 AGCTGAAGGAAGTCTTCTC 58 8213794 8213812 TCATCTGTTCCAGTAGCTG 58 NA Drosophila melanogaster 50 CG14739 FBgn0037987 FBtr0082553 1 1 1 60 3R 7874395 7874414 GCATGAATGTCCTTAAGCAG 59 7874354 7874374 GTTTCGAATATGTTGACCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18476 FBgn0037931 FBtr0082443 2 1 1 96 3R 7501594 7501612 CGAAATGATCCAGCATCAG 58 7501445 7501535 CATAATGCTCTTGGAGACAC 58 NA Drosophila melanogaster 50 Ugt35b FBgn0026314 FBtr0082375 3 1 1 62 3R 6995716 6995737 TTCAGAGATGTGTTTATCCCAG 59 6995603 6995696 GCTCAGTTCGTTTATCAATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8481 FBgn0037747 FBtr0100583,FBtr0082134 3 2 2 76 3R 5595003 5595022 TATATCTGTCCACCATCGAC 58 5595061 5595079 ATACATTGTAATGGGAGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8312 FBgn0037720 FBtr0082075 1 1 2 97 3R 5417889 5417907 CCGCAACAATTAACACCAG 59 5433694 5447257 AGCATGTTACGGAAGATCTG 59 NA InUTR Drosophila melanogaster 50 CG33191 FBgn0053191 FBtr0081941 3 1 1 60 3R 4604716 4604735 CAATTGAAGAACCGTTGGTG 59 4604675 4604696 TAGATTATCAAGTGCTCCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9793 FBgn0037620 FBtr0081948 2 1 1 185 3R 4554798 4554817 AGCAGGAACTCAAATCAGAC 59 4554580 4554650 GATCCTCACAGAATTCGCA 59 NA Drosophila melanogaster 50 CG11698 FBgn0037572 FBtr0081833 3 1 1 61 3R 4137972 4137990 GATGCAAGATTCCCAATGC 59 4138015 4138033 AGGATGTTCGAAAGAAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33722 FBgn0064126 FBtr0091719 3 1 2 185 3R 4069896 4069919 CATACAGATACGTATCCTTGTAGG 59 4070063 4070081 GTTGTGAAACTTGAGGCAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14598 FBgn0037503 FBtr0081534 2 1 1 61 3R 3265583 3266588 CTTACTCATTGCTTGTGCA 58 3266610 3266631 CCTTTATTTCTGACACATCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1965 FBgn0037466 FBtr0081634 2 1 1 119 3R 2896830 2896849 CCTACAGTCTGGTTGTTACC 59 2896929 2897004 GCTGGATTGCATAAAGATTGG 59 NA Drosophila melanogaster 50 CG9727 FBgn0037445 FBtr0081730 2 1 1 103 3R 2280093 2280112 CTAAGCTCCCGTATCAAGAG 59 2279954 2280027 TTCAAAGGTCCAATGTCTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG2091 FBgn0037372 FBtr0078678 2 1 1 277 3R 1580334 1580354 GACTTATCCAAGTTCCAACTG 58 1579955 1580034 TTCACACTGCACAAATCCT 59 NA DesignNoJunction Drosophila melanogaster 50 Rab23 FBgn0037364 FBtr0078727 3 1 1 141 3R 1508451 1508469 GCTTAGATGCGTCTAATCC 57 1507624 1508346 CATTTCCAACAATGACCAC 57 NA InUTR Drosophila melanogaster 50 PEK FBgn0037327 FBtr0078770 1 1 1 95 3R 1286479 1286582 GATACTTCCATTCCTGGACC 59 1286403 1286421 TCTGGATAGAGGTGGACAG 59 NA Drosophila melanogaster 50 snoRNA:Psi28S-1837c FBgn0082994 FBtr0113607 3 1 1 74 3L 5757107 5757125 CAGAGATCAACAGTGTCGA 59 5757051 5757070 TGGACAACTTTAAAGACCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34410 FBgn0085439 FBtr0112678,FBtr0112677 1 2 2 200 3L 21326357 21326460 TTTAATAGGCAACAAGGCC 57 21327025 21327043 TTGAACTTTCCATCATCGC 58 NA Nonspecific Drosophila melanogaster 50 Gyc76C FBgn0013974 FBtr0100157,FBtr0100156,FBtr0100155 1 3 3 80 3L 19718583 19750645 AGATACACAGGTCGTTAAGTC 59 19718523 19718541 ACATCCTCGTACAGAATGG 58 NA Drosophila melanogaster 50 BG642378 FBgn0052203 FBtr0110771 3 1 1 91 3L 19121729 19121814 ATGACTATAGATGTGGGCG 58 19121656 19121674 TAAATGGTGCTCTTGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7580 FBgn0036728 FBtr0075222 1 1 1 192 3L 17468527 17468545 TATCCTCGATCCTGAATGG 57 17468757 17468775 TAGATCAGGTATCCCACGA 58 NA DesignNoJunction Drosophila melanogaster 50 a10 FBgn0011293 FBtr0075290 1 1 1 60 3L 17016650 17016668 GATAAGTTCGACAACGTCG 58 17016608 17016626 AGTTGATCAACAGTCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33061 FBgn0053061 FBtr0113448 3 1 1 193 3L 16323434 16323452 TACGATTAGCCAGGTTCAG 58 16323609 16323687 AAGTGTTGCTCAACTTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32150 FBgn0052150 FBtr0075534,FBtr0075535 2 2 2 60 3L 15831585 15831603 CCAGACCAACTGTATAGGG 58 15831543 15831563 CGGCCAGTTTATAAAGTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32135 FBgn0052135 FBtr0075760 3 1 1 60 3L 13961105 13961125 AGATATCATCGGATACTCTGG 58 13961145 13961165 GAAGTCTGCAATACGAATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33263 FBgn0053263 FBtr0075859 2 1 1 60 3L 13417110 13417131 CATCTATTGCAATGGAGAAGAC 59 13417071 13417089 GTCAAAGTAGGTGGACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14107 FBgn0036351 FBtr0075866 2 1 1 60 3L 13373761 13373782 GAAGAGGAAACTCCATCTACAG 59 13373722 13373742 TCTTGTTATCCTCGATTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32110 FBgn0052110 FBtr0075931 2 1 1 60 3L 12802814 12802833 TACTACAATTCAAGAGGCCG 59 12802854 12802874 GAAGGTACTTCACTAGTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33500 FBgn0053500 FBtr0076094 1 1 1 68 3L 11501796 11501814 TAGTACCACAACAACCACG 59 11501846 11501864 GTTGTTGTGGTTGATGCTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3529 FBgn0035995 FBtr0076461 2 1 1 107 3L 9442915 9443129 GGTAAGTAAATCGACGAAAGAG 58 9443360 9443378 AATTTGTCAAACTCCGAGC 58 NA Drosophila melanogaster 50 CG34455 FBgn0085484 FBtr0112761 3 1 1 98 3L 9354002 9354020 CAAGACCTTTAAGGGTCCC 59 9354147 9354166 AAGAGGTGTGAGTACAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6673 FBgn0035906 FBtr0076653 1 1 2 60 3L 8515813 8515831 TGACTACATGATTTGGCCC 59 8515771 8515791 TTCATCCAGAGTGTACTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7182 FBgn0035878 FBtr0076677 2 1 1 60 3L 8338726 8338744 CCATCAATATCACACGGAC 57 8338684 8338702 GTAGCTGGGTATGGATAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bin FBgn0045759 FBtr0076900 3 1 1 194 3L 6986052 6986142 GGACAATGGCAACTATTACG 58 6986296 6986317 CAGGATATGTTCGTATACTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10625 FBgn0035612 FBtr0077140,FBtr0077139,FBtr0077137,FBtr0077138 2 4 7 110 3L 5534359 5534445 GACGCTATAACGGTATTAACG 58 5534269 5534287 CAACAACGTGGACATATGG 58 NA Drosophila melanogaster 50 CG4780 FBgn0035602 FBtr0077145 2 1 1 64 3L 5359927 5359945 CTGTTGTATAAGGTGCCAC 58 5359973 5359991 TATTTCAGCTGATCCACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32248 FBgn0052248 FBtr0073304 3 1 1 83 3L 4471710 4471839 GCCGGTCTAAGATATTATTCGA 59 4471883 4471901 GTAGTTGTAGCCAGATTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr64Ab FBgn0035511 FBtr0073253 2 1 1 196 3L 4211335 4211462 TCAAGATCACCCTCATCTG 58 4211157 4211175 CTTGACCACATCTCCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18675 FBgn0040696 FBtr0073218 2 1 1 263 3L 4174526 4174544 AATACCGAGGATCTGACTG 58 4174831 4192200 CTCAAGTTTCTTGAGTTCCTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG14963 FBgn0035409 FBtr0073111 1 1 1 60 3L 3172134 3172154 AGTCTATTGAACCAGTTTCCC 59 3172094 3172112 TTAGAAATCCTTGCCAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr62Bc FBgn0035281 FBtr0072869 1 1 1 120 3L 1841181 1841772 ATCGATTACCATGCCTACC 58 1841079 1841097 GAGAGTAGGATCCCTTGAC 58 NA Drosophila melanogaster 50 CG18173 FBgn0035265 FBtr0072796 2 1 1 60 3L 1736625 1736645 TGCCTACGAAATTGGTATCTC 59 1736585 1736604 CAGCATCCATATGACATAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13920 FBgn0025712 FBtr0072761 1 1 1 87 3L 1650774 1650792 ATACCCTCGAAATGGTACC 58 1650840 1650921 TGACCTTATGATAGGGAATCAG 58 NA Drosophila melanogaster 50 Bgb FBgn0013753 FBtr0072758 2 1 1 62 3L 1640022 1640040 ATGATACCCTACGACACCA 59 1640066 1640084 CATCTTGAAGATGAAGCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34057 FBgn0054057 FBtr0100835 1 1 2 255 3L 897725 897743 CATACTCTGCCTAGTGCTC 59 897962 898035 ATAAGTGTCATCATCGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 mri FBgn0035107 FBtr0072481,FBtr0072480 2 2 3 130 3L 201354 201444 AGGAGTATTGTCAGACCGT 59 201538 201556 GTATCCCTCTATGCCACAG 58 NA Drosophila melanogaster 50 snoRNA:Psi28S-2949 FBgn0082981 FBtr0113494 2 1 1 90 2R 4982895 4982913 GCAAATCGAGTTCTACTGG 58 4982967 4982985 AATTGCAATCGGTGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pncr016:2R FBgn0062961 FBtr0091953 1 1 1 69 2R 14598932 14598952 GCTATTACTCTTTGTTTCCGC 59 14598983 14599059 CGTTAAGCAATCAGCAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16936 FBgn0027590 FBtr0072436 3 1 1 280 2R 20654930 20655005 GAACTACGGCCAATTAACC 58 20654668 20654687 CCATAATACAGGATGGGCTC 59 NA DesignRelaxed Drosophila melanogaster 50 Start1 FBgn0035028 FBtr0089867,FBtr0089868 2 2 2 80 2R 20462815 20462896 GCATTGTGATCAATGGAGAC 59 20462937 20462957 CAAAGAGCGATTTGTAGATGG 59 NA Drosophila melanogaster 50 prom FBgn0050164 FBtr0072360 2 1 1 84 2R 20308342 20308871 GCGGAACTATACATTGGAG 57 20308276 20308294 TCCATTTACCGTAGAGGTC 58 NA Drosophila melanogaster 50 CG3394 FBgn0034999 FBtr0072268,FBtr0072269 2 2 2 247 2R 20184731 20184749 GACGTCTTCTTTAACTCGG 57 20185258 20185276 TAATCCATGTCCACCTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 RpL12 FBgn0034968 FBtr0072174,FBtr0072176,FBtr0072175 3 3 3 186 2R 19948506 19948680 GCAGAAGAACATCAAGCAC 59 19948827 19948848 GTTCAGTTCGTCAATAACATCG 59 NA Drosophila melanogaster 50 PebIII FBgn0011695 FBtr0072164 1 1 1 62 2R 19914606 19914624 CAAGTACGACAACATCGAC 58 19914650 19914668 AAGTAGTTTCCGAAGAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3105 FBgn0034950 FBtr0072160 1 1 1 81 2R 19879127 19879205 CGTTAATGAAGCCAAGCAC 59 19879250 19879268 CTCGTGGTTACTCACTGAG 59 NA Drosophila melanogaster 50 CG4091 FBgn0034894 FBtr0072097 3 1 3 299 2R 19588108 19588336 TGGAACTTGGAAGTCATGG 59 19587827 19587846 CTTTCTCTTAAAGAGCTCCG 57 NA DesignRelaxed Drosophila melanogaster 50 CG9890 FBgn0034814 FBtr0071984 1 1 1 60 2R 18951579 18951597 CTGGCGCATTTGTATATGG 59 18951537 18951555 GAAGCGCTATATCCTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34209 FBgn0085238 FBtr0112402 1 1 1 215 2R 18928886 18929134 ATGAATGGACTTGGATCCG 59 18924319 18924337 TGGGATTGTACGATGTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13532 FBgn0034788 FBtr0071899 3 1 1 109 2R 18760890 18760986 TGTCTGTCATGTTTGACAC 57 18761059 18761077 TTGATCTCTAGGAATGCGG 58 NA Drosophila melanogaster 50 CG12490 FBgn0034782 FBtr0071892 3 1 1 94 2R 18723774 18723873 CATGAAGACGATAACCGTG 58 18723929 18723949 GTTCCAAAGTATAGGTACACC 57 NA Drosophila melanogaster 50 CG34029 FBgn0054029 FBtr0100084 3 1 1 62 2R 17858383 17858401 GGATCTTCGATCACAGAGC 59 17858339 17858357 AAAGTCATCCACGATTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr57a FBgn0041240 FBtr0086241 2 1 1 89 2R 16573352 16573370 TCGAATCCCTAATGTCGTG 59 16573226 16573299 ACAAACCGATAACTTTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11099 FBgn0034485 FBtr0086315 3 1 1 242 2R 16124464 16124540 CTACCAGTGGAGCTAAGTG 59 16124825 16124843 ATGGTTCATGAACTTGGAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG18607 FBgn0034429 FBtr0086514 1 1 1 60 2R 15177147 15177166 TTCTGCACTAGCTTCTACTC 58 15177189 15177207 AATAGATGCACTCCATGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cora FBgn0010434 FBtr0086508,FBtr0086506,FBtr0086507,FBtr0086509 1 4 4 88 2R 15123848 15123866 CATCCCGCTAAGGATTCTG 59 15123918 15124001 TTGATGCGCAATTTATCGC 59 NA Drosophila melanogaster 50 botv FBgn0027535 FBtr0086579 2 1 1 93 2R 15017988 15018066 TTAGAATCAAGAGCACCGT 58 15018123 15018141 ATCTTCTGGTTGTACTGGC 59 NA Drosophila melanogaster 50 CG15105 FBgn0034412 FBtr0086572,FBtr0114622,FBtr0086573 3 3 3 114 2R 14882548 14882566 GATACCCTACAATGGCGTC 59 14882642 14884407 CATAATTTGACCTGATGTGGG 59 NA Drosophila melanogaster 50 CG15073 FBgn0034379 FBtr0086607 1 1 1 80 2R 14594730 14594749 TATCTGTTGGATCAGCATCG 59 14594792 14594870 TTGGTTGGGAAATCTCCTC 59 NA Drosophila melanogaster 50 CG5493 FBgn0034364 FBtr0086713 2 1 1 128 2R 14504805 14504823 CAATAGATCTGCCAGGGAC 59 14504618 14504716 CCCAGATTGTCATTTATGTAGG 58 NA Drosophila melanogaster 50 CG5033 FBgn0028744 FBtr0089551,FBtr0089550 3 2 2 82 2R 13679634 13679717 CATGGTCTATAATGACCTGCT 59 13679761 13679779 CAAACTCATCGCGTTTCTC 59 NA Drosophila melanogaster 50 CG4802 FBgn0034215 FBtr0086916 3 1 1 192 2R 13316435 13316513 TACTAAATGCCAAGCAATGC 59 13316665 13316686 GGATCTAATTCGTACGTAATGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Pkc53E FBgn0003091 FBtr0087049,FBtr0112819,FBtr0087048 3 3 3 80 2R 12829598 12829617 ACATAGTGGGTGATAAGACC 58 12829657 12829746 AGGGCTGATACAGTATTATCTC 58 NA Drosophila melanogaster 50 CG15709 FBgn0034100 FBtr0087186 2 1 1 71 2R 12141762 12141942 CAGGAAGCTGATACAGTGG 59 12141709 12141727 CAAATTACGCATACGCCAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 ATPCL FBgn0020236 FBtr0087266,FBtr0087265 2 2 2 84 2R 11881891 11881974 TTTACCAGTGAGGAAGCAC 59 11881825 11881844 CAATAAATCCTATGCTGCGG 59 NA Drosophila melanogaster 50 CG8152 FBgn0034008 FBtr0087392 3 1 1 60 2R 11198336 11198354 CCTAACCTTCCAAGTACCC 58 11198294 11198312 CTAGGATCCTTTCTGGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12859 FBgn0033961 FBtr0087440 3 1 1 128 2R 10644342 10644360 ACTACGAACACTTCAAGCC 59 10644452 10644470 CAGTCCTGTACTTCTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17724 FBgn0033802 FBtr0087771 2 1 1 169 2R 9072421 9072441 ACGGATGGAAATGTCTATCAG 59 9067606 9072290 TATATCGTAGCGGCAACAC 59 NA InUTR Drosophila melanogaster 50 sug FBgn0033782 FBtr0087789 3 1 1 170 2R 8816678 8816696 GATACGGATATCGTCAGCG 59 8816830 8817290 CTCTATCGCAATCTGTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bic FBgn0000181 FBtr0087783,FBtr0087782 1 2 2 141 2R 8757979 8757997 GAAGAAGATCGTCCACTCC 59 8758102 8758120 ATTGTTGAAGTGGATGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13151 FBgn0033750 FBtr0087939 3 1 1 60 2R 8403889 8403907 TGATCTGCGATTTCAAGAC 57 8403929 8403949 AAGTTTAGATACCGTGATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8850 FBgn0033708 FBtr0087973,FBtr0087972 2 2 2 116 2R 8186727 8186747 GTCTACTATATGGCTGGATGG 59 8186569 8186649 CAGTCCGAATTTACTGCCA 59 NA Drosophila melanogaster 50 CG13188 FBgn0033668 FBtr0088039,FBtr0088040 1 2 2 81 2R 7837687 7843102 TATACAAGGAGCACATTCAGG 59 7843145 7843163 TCGAAGACGATCACTTTGG 59 NA Drosophila melanogaster 50 CG13203 FBgn0033628 FBtr0088130 3 1 2 164 2R 7263313 7263331 AGGATAACAGTTCAGTGGC 59 7263780 7263799 GTATCATGTGCGAGTACTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Gr47b FBgn0041241 FBtr0088127 1 1 1 113 2R 7250564 7250644 TTTACCTGGTGTACAACGG 59 7250721 7250739 CAATGTCCACATCTTTGCC 59 NA Drosophila melanogaster 50 Cpr47Ea FBgn0033597 FBtr0088190 3 1 1 140 2R 7139937 7140226 GTACAACTACGAGACAAGC 57 7139729 7139747 TAGGTGATGGTGTAGACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG12391 FBgn0033581 FBtr0088205 1 1 1 176 2R 7037014 7037121 TATGGATTACCTCGAGGAC 57 7036856 7036874 GCAGATTCTTGCAAATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sec31 FBgn0033339 FBtr0088643,FBtr0088642 1 2 2 153 2R 4785817 4785901 GAGATGGAAAGCTCACTCC 59 4786018 4786036 TTCAGTCCCTGCATAAAGC 59 NA Drosophila melanogaster 50 LvpH FBgn0002570 FBtr0088759 1 1 1 60 2R 4337447 4337530 GATGTGATCATCTATTCACGAC 58 4337408 4337429 GGTTGAGAACGATTACATAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3420 FBgn0033100 FBtr0086135 1 1 1 146 2R 2644251 2644269 GAGAACGGTACGATCTTCG 59 2643986 2644065 CCTCTGCTTGATCTTCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)09851 FBgn0022288 FBtr0086043 3 1 1 60 2R 1643297 1643317 GTAGAGAAGGACATCGATCAG 59 1643338 1643357 ACTTGTTTAGGACATCTTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31693 FBgn0051693 FBtr0100262,FBtr0085931 1 2 2 60 2L 22015606 22015627 GGAGCTCAGATTTAAATGTGAC 59 22015648 22015666 TTGCTTATGCCAATGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33858 FBgn0053858 FBtr0091862 1 1 1 60 2L 21526911 21526930 GGTCAATGGAAAGCTTATCC 58 21526953 21526971 CGACAGTTTGAAAGATCCA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 barr FBgn0014127 FBtr0081348 3 1 2 80 2L 20060349 20060427 CATGAGCAACTTCAAGATGG 59 20060288 20060306 AAGTAGATGGAGTCCACAC 58 NA Nonspecific Drosophila melanogaster 50 CG10263 FBgn0032812 FBtr0081264,FBtr0081263 2 2 3 158 2L 19581472 19581490 ATCAATCACAGACATGTGG 57 19581332 19581350 TTAGGAGCCATAGCTACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18518 FBgn0028900 FBtr0080814 2 1 1 60 2L 15835479 15835499 CAACGCCAACTTATATGACAC 59 15835439 15835457 GCAGAATCCATCTGGAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yuri FBgn0045842 FBtr0100611,FBtr0080709,FBtr0100610,FBtr0100612 1 4 7 82 2L 15258832 15258852 CAATAGCTACTCCGATTTCAG 58 15258698 15258791 GGGATAGATCACAATTCTTCTG 58 NA Drosophila melanogaster 50 elB FBgn0004858 FBtr0080636 1 1 3 94 2L 14391196 14391323 TTATCATCCGTACGGATGG 58 14391120 14391138 TGATGGGTTTGACTGAAGG 59 NA Drosophila melanogaster 50 CG31765 FBgn0051765 FBtr0080584 1 1 1 202 2L 13961767 13961785 CACTGTATGTGTACCGGAG 59 13961951 13962136 ATATAGCTCTGGTTGTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5945 FBgn0032494 FBtr0080450 2 1 1 169 2L 13240691 13240709 TGAATTCAACGTAACGCTC 58 13240894 13241506 TATCCAGTTCAGGATCTGC 58 NA DesignNoJunction Drosophila melanogaster 50 spict FBgn0032451 FBtr0080397 1 1 1 60 2L 12706154 12706173 TATGTAATGTTCACCACCCT 58 12706196 12706214 GGGTGAACTCCTTGAAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nub FBgn0085424 FBtr0112642 2 1 2 119 2L 12614102 12614120 ATAAGGTCCTGGAACTGAC 58 12614202 12622983 GACTGATATCATTTGGGTCC 57 NA Drosophila melanogaster 50 CG14935 FBgn0032382 FBtr0080277,FBtr0080276 1 2 2 95 2L 11852014 11852090 CTTTAAGCGGTCCTATCCC 59 11852148 11852167 TGGCTAAGAAACTCTGAGAG 58 NA Drosophila melanogaster 50 CG5731 FBgn0032192 FBtr0079959 1 1 1 80 2L 10207543 10207561 CTCCATCGGATATTTCGGT 58 10207418 10207499 TTTCGTAAAGGTCCTCCAC 59 NA Drosophila melanogaster 50 CG4804 FBgn0032178 FBtr0079938 3 1 1 117 2L 10063645 10063722 AATGCCACAGAATATAAGCC 58 10063802 10063820 GACCCATCAGATAGGTCAC 58 NA Drosophila melanogaster 50 obst-B FBgn0027600 FBtr0079934 1 1 1 90 2L 10037272 10038228 CAAGCTACAAACACCTCAG 58 10038281 10038300 GTAGAACTTATCGCAGATGC 58 NA Drosophila melanogaster 50 CG4658 FBgn0032170 FBtr0079886,FBtr0079885,FBtr0079887 2 3 3 146 2L 9959098 9959554 TCATGTCCATAGAGGTGTG 58 9959664 9959682 GATATCGATCCGGATGGTC 59 NA Drosophila melanogaster 50 Aats-ala FBgn0027094 FBtr0079721,FBtr0079722 1 2 2 251 2L 8380660 8380682 GATCTAACTACGATACCGATCTG 59 8380308 8380449 ACTTCTCAGTGGCATAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lectin-28C FBgn0040099 FBtr0079527 2 1 1 60 2L 7857744 7857764 TTGAAATGGAATCCTGGAGAG 59 7857786 7857804 GTATAGAAACGCAACGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Wnt10 FBgn0031903 FBtr0079435 2 1 1 147 2L 7375805 7377075 GAGCTGATATACAGGGCAC 59 7377184 7377204 CAGCACCATTGGAATTTACAG 59 NA Drosophila melanogaster 50 CG13776 FBgn0031880 FBtr0113027,FBtr0079353 1 2 2 60 2L 7014150 7014170 TAACAATCTAAACGGGTCTGG 59 7014192 7014210 CAGATAGGGATTCTGCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9523 FBgn0031812 FBtr0079257 2 1 1 162 2L 6425659 6425736 CATCCTGTCAACTATGCAG 57 6425862 6425880 GATAGTACTTGCTACGCTG 57 NA Drosophila melanogaster 50 chic FBgn0000308 FBtr0079233,FBtr0079235,FBtr0079236,FBtr0079234 1 4 4 106 2L 5973673 5976627 CATGAAGACAACACAAGCC 59 5973585 5973606 CGCAAGTAATCAGATAATCTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14007 FBgn0031731 FBtr0113023 2 1 1 108 2L 5716148 5716228 GCCATTAAGTTACGGAAATGG 59 5716060 5716081 GCTTCTTTAGCATGATCATCAG 59 NA Drosophila melanogaster 50 CG8838 FBgn0031526 FBtr0077588 3 1 1 61 2L 3357986 3358004 GCATTTGACCCAGAAACAC 59 3358029 3358047 TAATTGCGTTCTTCTCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34393 FBgn0085422 FBtr0112637 3 1 1 150 2L 3190603 3190621 GTCAAACATATCGTTGCCA 58 3190107 3190417 TTTCTGGTCCAGACTTGTC 59 NA Drosophila melanogaster 50 CG3542 FBgn0031492 FBtr0077648,FBtr0077649 3 2 2 72 2L 3025568 3025589 GAATGAGCATATAGAAGTGGAG 58 3025622 3025706 AATTGAGGTCAGGGAATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2964 FBgn0031462 FBtr0077722 2 1 1 282 2L 2813905 2813924 GATACTGTACACCTTGGAGC 59 2814169 2814250 TTTCTTATCAGCAGGCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aph-1 FBgn0031458 FBtr0077716 1 1 1 60 2L 2766696 2766773 CTGGCTGATATGAGTGGTC 59 2766797 2766815 CGAAGAATAGCTCAGTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31690 FBgn0051690 FBtr0077704,FBtr0077703 3 2 2 286 2L 2712124 2718299 CTCACTTTAATCTGGGCGT 59 2718549 2718567 CTGAAGTCTTCCATCGGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG5556 FBgn0031332 FBtr0077948 2 1 1 61 2L 1352719 1352740 GGTATTAGCTATTGCATCTTCG 59 1352623 1352698 TTATAGACATGACGCGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5139 FBgn0031323 FBtr0077977 2 1 1 60 2L 1198785 1198806 CTACGAAATACACAAGACAACC 59 1198746 1198764 GATGAGAGCTCCATATGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 smi21F FBgn0016926 FBtr0077987 1 1 2 102 2L 1128211 1128229 CTCCTCGTCTCACATTGTC 59 1117515 1128147 CACTATGAAGTTCAGCTTGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13690 FBgn0031252 FBtr0078090 1 1 1 60 2L 419043 419064 CAATATAGCCGAGGTTTATGTG 59 419004 419024 CAACTTCTCCTGGTACTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:L:35C FBgn0028889 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR31946 FBgn0051946 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG6461 FBgn0030932 FBtr0074622 2 1 1 126 X 18401607 18401626 AGGACTACCTCTACTATGGC 59 18400681 18401521 GAGCCGAAATAGTTATTGATGG 59 NA Drosophila melanogaster 50 CG15056 FBgn0030918 FBtr0074560 1 1 1 60 X 18310052 18310071 TCAATGATGAGAACCTTGTG 57 18310094 18310112 CTCAGATCCAATGTCTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074573,FBtr0074572,FBtr0074575,FBtr0074574,FBtr0074571,FBtr0074570 3 6 6 115 X 18285990 18286081 ACCACTCAGAATATGGCTC 58 18285893 18285911 TACGTATAGTCGCTGTTGG 58 NA Drosophila melanogaster 50 CG5445 FBgn0030838 FBtr0074428,FBtr0074425,FBtr0074427,FBtr0074426 3 4 4 133 X 17198383 17198401 CAAATGGCTGGTACTTTGG 59 17198822 17198843 GTTGATTTGCGGATAGATATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4239 FBgn0030745 FBtr0074270,FBtr0074269,FBtr0074268 3 3 3 212 X 16281482 16281500 AAAGGTGTACGATGGTGTG 59 16281737 16281755 AGCACAAAGATGATCGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 1 12 15 238 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978622 6978640 ATTGATCTACCTCTGTGCA 57 NA DesignRelaxed Drosophila melanogaster 50 CG33082 FBgn0053082 FBtr0070174 3 1 1 60 X 924950 924970 CTCGAATTTAATGGCAGTAGG 58 924991 925010 GCAGAGTTTGCCATAATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40609 FBgn0085501 FBtr0113912 1 1 2 107 U 5681766 5681786 CAGACGCCAATACTAATACCA 59 5681446 5681697 CTTTCATCGCTTGGTTGTC 59 NA Drosophila melanogaster 50 Rad23 FBgn0026777 FBtr0089121,FBtr0089122 1 2 2 95 4 330248 330326 GTATTGCAGCAGATTGGTC 58 330384 330403 GTCAATCGGTTGATTAAGCA 58 NA Drosophila melanogaster 50 CycG FBgn0039858 FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799 2 5 5 91 3R 27426460 27426478 ACATCAAGGAGTCGTACAC 59 27426317 27426407 ATCAGGAATCCTCATGTACTG 58 NA Drosophila melanogaster 50 CG15534 FBgn0039769 FBtr0085644 3 1 1 77 3R 26258989 26259007 ATGTCTTGGAAACCACGAG 59 26259681 26259699 CAGTCAACTCTAAGGGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Tl FBgn0003717 FBtr0085059 1 1 2 147 3R 22652406 22663446 AGTTCTGAGCAAGTGAACC 59 22663557 22663575 TATGCTCATCTCACTGCAC 59 NA InUTR Drosophila melanogaster 50 CG33970 FBgn0053970 FBtr0100013,FBtr0100012 1 2 2 103 3R 22182065 22182083 GAACAATTCTGTCCAGTGC 59 22182150 22186296 GTCACATATTGCACAACCA 58 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 2 5 6 82 3R 20045369 20045389 CATGAACATCTACAACGAACC 59 20025659 20045326 GTGGATTCACGGTAAATGAC 58 NA Drosophila melanogaster 50 CG31457 FBgn0051457 FBtr0084405 1 1 1 60 3R 18952919 18952939 GAAGATGAACTTAAGCAGTCC 58 18952879 18952897 GTCTGTTTCGTAGAAGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13855 FBgn0038960 FBtr0084225 2 1 1 96 3R 18233912 18233986 GTGAACTAAGATTACCGCG 58 18234046 18234064 ATCTTGTAGTGATCTCGCG 59 NA Drosophila melanogaster 50 Fas1 FBgn0000634 FBtr0112803 2 1 4 138 3R 12455313 12457341 CAGTTAGGTTCTACAGCCT 58 12457443 12457461 ATGTGATAGAGCACATGGG 59 NA Drosophila melanogaster 50 ird5 FBgn0024222 FBtr0083236 3 1 1 65 3R 11872859 11872877 TGCGAGAAAGACCTATTCG 59 11872744 11872762 AATTATCGCACCATTGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Spn5 FBgn0028984 FBtr0083142,FBtr0083141 3 2 2 95 3R 11029202 11029283 GAACTTAATCCTATCCTTGCCA 59 11029128 11029146 GATGGAAATCGTCTCGGAG 59 NA Drosophila melanogaster 50 pr-set7 FBgn0011474 FBtr0082929,FBtr0082928,FBtr0082930 1 3 3 97 3R 10142502 10142520 CGTTTGATGAAGGTCACTC 58 10142581 10142670 AAGGGAACTCCTATTGTGC 59 NA Drosophila melanogaster 50 CG6908 FBgn0037936 FBtr0082437 2 1 1 90 3R 7514792 7514875 TTGACAAATGATGTGCAGG 58 7514720 7514739 TTAGAACTCGGAATTCTCCC 58 NA Drosophila melanogaster 50 CG6830 FBgn0037934 FBtr0082439 1 1 1 60 3R 7507414 7507432 GTGTGGATGAGTACTTGCA 59 7507317 7507336 AGTATTCTGTCGACATACGT 58 NA DesignNoJunction Drosophila melanogaster 50 scpr-C FBgn0037879 FBtr0082351 3 1 1 108 3R 7052001 7052019 AAGAACCGTTATGGAGCTG 59 7052091 7052109 CATTCCATGCCTACATCGT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 hth FBgn0001235 FBtr0082256 2 1 6 109 3R 6359727 6387645 ATACATCAGACCCTGATGGA 59 6359637 6359655 ACTACCGAGGAAGACTGAG 59 NA Drosophila melanogaster 50 tws FBgn0004889 FBtr0082188,FBtr0082189,FBtr0082186,FBtr0082192,FBtr0082191,FBtr0082187,FBtr0082193,FBtr0082190 1 8 8 80 3R 5954403 5954421 CTCCAGGGATTACTTGAGC 59 5954227 5954361 TATTCATGAACCGGATAGGTC 59 NA Drosophila melanogaster 50 Prosbeta3 FBgn0026380 FBtr0082010 3 1 1 110 3R 4831658 4831676 AAGAAGGTGTTCCACATCG 59 4831566 4831585 TGTCTCGTACAGATTCTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Alh FBgn0037471 FBtr0113199,FBtr0081615 1 2 6 130 3R 2921228 2921310 GAAGATGATCTCAGCAGCA 59 2921116 2921134 TTGTCGTTCTTATGCAACG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 dj FBgn0019828 FBtr0089742,FBtr0089741 2 2 2 61 3R 2885313 2885331 GTCTCTATTCACGATCCGC 59 2885356 2885374 AACTTTCGTTGCATTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33056 FBgn0053056 FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311 1 5 5 111 3L 21192061 21192083 GGATGGTAGACATATCTACAACC 59 21191820 21191990 GTGCTCCCTCATATGTTCC 59 NA Drosophila melanogaster 50 CG3698 FBgn0037023 FBtr0078273 2 1 1 62 3L 20791339 20791357 TGAAGAAGATCTTCCCACG 58 20791295 20791313 TCTGACTGTGCTGATATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4074 FBgn0037017 FBtr0078280 1 1 1 60 3L 20762323 20762342 CGATGCTTTCTATAACTCGG 58 20762282 20762302 AGATAACTCCAGGCTATTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32225 FBgn0052225 FBtr0074845 1 1 1 155 3L 20297929 20297947 CTTCATGTTCAAGGACAGC 58 20297735 20297810 TTGAAGTATCTCCAACCGC 59 NA Drosophila melanogaster 50 CG10725 FBgn0036362 FBtr0089323 1 1 1 103 3L 13431284 13431361 GTGCATGAATGAGATAGCTG 58 13431427 13431445 ATCCAATACACTCGACCTC 58 NA Drosophila melanogaster 50 GlcAT-P FBgn0036144 FBtr0076189 3 1 3 86 3L 11176788 11176806 CACCTGCATTTATATGGCG 59 11175730 11176739 GATTTCTCCTGATGCTTGAC 58 NA Drosophila melanogaster 50 CG3967 FBgn0035989 FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480 2 5 5 119 3L 9410906 9411455 CATCACAAACAGTCCTAACAC 59 9410807 9410825 TGTGTTATCTGCTGCAGTC 59 NA Drosophila melanogaster 50 Hn FBgn0001208 FBtr0100225,FBtr0076811 3 2 2 115 3L 7755646 7755730 AATTGTCCACCATCTTCTGG 59 7755808 7755826 GAGGCAATACTCCAGTTCC 59 NA Drosophila melanogaster 50 enc FBgn0004875 FBtr0073153,FBtr0112845,FBtr0073152,FBtr0112844 3 4 4 104 3L 3839509 3839636 CAATGATGATACAAGCGCG 59 3839702 3839722 GTTTGGGTATCCTATATCGGT 58 NA InUTR Drosophila melanogaster 50 mtacp1 FBgn0011361 FBtr0072677 2 1 2 212 3L 1330899 1330917 ATCGAGGACATCAAGTTCC 59 1331408 1331426 CTTAATAATGTCGGCAGGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG3065 FBgn0034946 FBtr0072153,FBtr0072155,FBtr0072154 2 3 3 60 2R 19859018 19859039 GATAAAGATTAAGCTGGAACGG 59 19859060 19859078 TTCAGGAGATACGATCTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10082 FBgn0034644 FBtr0071662,FBtr0071661 3 2 2 82 2R 17542999 17543106 CTACTCTTGCTCACTGCTC 59 17543152 17543170 ACTCATCCTGACTCATCGA 59 NA Drosophila melanogaster 50 Xpd FBgn0015844 FBtr0071577,FBtr0071576 1 2 2 83 2R 17060261 17060279 ACTCGATTTCGATCCAGTG 59 17060324 17060407 CCCTTCGATACAATCATAGGA 58 NA Drosophila melanogaster 50 CG15111 FBgn0034419 FBtr0086581,FBtr0086580 3 2 2 69 2R 15027274 15027292 GTATTCCGTAACGTTCCAG 57 15027388 15027406 GAGATCAAGTCCTTTGGGA 58 NA DesignNoJunction Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 3 8 8 99 2R 14032395 14032483 AGGAAAGAATTCTGAGAAGC 57 14032544 14032563 CTCAATCATCGGATACAGAC 57 NA Drosophila melanogaster 50 CG14487 FBgn0034272 FBtr0086865 3 1 1 60 2R 13632467 13632488 GCCAGAAGAATTCCAATTAAGG 59 13632508 13632527 GGAACATATTGGAAGCACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15609 FBgn0034180 FBtr0114626,FBtr0114629,FBtr0087019,FBtr0114627,FBtr0114628 1 5 6 93 2R 12901358 12901376 ATCACACCATATCCGTCAC 59 12901222 12901301 ATTGGAGTGACATCTTCGA 58 NA Drosophila melanogaster 50 CG30098 FBgn0050098 FBtr0087168 3 1 1 116 2R 12242539 12242557 ATAACAGATTCGCATGTGG 57 12242322 12242340 TCGACGAATCGTATTCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17034 FBgn0033837 FBtr0087708 2 1 4 94 2R 9306556 9306574 TTTAAGACACTGACGGAGG 58 9303451 9306499 GTTTCCGTGAATGAAGATCG 59 NA Drosophila melanogaster 50 CG18812 FBgn0042135 FBtr0088936,FBtr0088937,FBtr0088935 1 3 3 87 2R 3607184 3607202 GAACAACTATCCATCGCTG 58 3607049 3607068 GATATAGAAGGCCTTCAGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG34216 FBgn0085245 FBtr0112409 3 1 1 60 2R 3591940 3591959 CTGAATCGCAAGTACAAGTG 59 3591899 3591918 ATAGGAGCAATACATCTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012 2 6 7 107 2R 3293620 3293715 CAAATATGACTTCAAGCCAGC 59 3287508 3293552 CCGGAACTTTCAGAATTTGG 59 NA Drosophila melanogaster 50 CG17472 FBgn0032868 FBtr0081382 3 1 1 62 2L 20634580 20634600 CTCTTAGTATTGGCGAATCTG 58 20634692 20634713 CCTTTCGTGTTCATCATATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pax FBgn0041789 FBtr0081213,FBtr0081210 2 2 6 178 2L 19410627 19426207 GGATGCTCTATTAGCCGAC 59 19410401 19410485 AGTGCTCTTGATACACCTG 58 NA Drosophila melanogaster 50 ninaD FBgn0002939 FBtr0081031 3 1 1 83 2L 18083178 18083260 TCAGAACTTAGGTTGGCAC 59 18083307 18083325 TATAAGAATGCAGCCCAGG 59 NA Drosophila melanogaster 50 CG18301 FBgn0032265 FBtr0080094 2 1 1 108 2L 10532833 10532851 AGATCGTTATGATGCAGGC 59 10532923 10532996 CTTAGGAAGGAGGCAACTG 59 NA Drosophila melanogaster 50 KdelR FBgn0022268 FBtr0080023,FBtr0080021,FBtr0080022 3 3 3 60 2L 10427496 10427515 TCAATCATGAGTTTACCGTG 57 10427537 10427556 ACCGATTCCAAATAGATCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31716 FBgn0051716 FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080009,FBtr0080012 2 5 6 90 2L 10398212 10398292 GATATCAGATTTGCCGATTCTG 59 10398343 10398361 GGATTCTCGGGATACTCCT 59 NA Drosophila melanogaster 50 Scgalpha FBgn0032013 FBtr0079597 2 1 1 100 2L 8304973 8305055 CATGAGATCTCAGAGTCCC 58 8305119 8305137 AAGTACCGCCCTTATATGG 58 NA Drosophila melanogaster 50 CG4502 FBgn0031896 FBtr0079417,FBtr0079416 1 2 2 167 2L 7196232 7196327 ACGACAAGATCACAAGGTG 59 7196024 7196044 TCGAATAGACTATCGTTGACG 59 NA Drosophila melanogaster 50 CG3277 FBgn0031518 FBtr0114460 3 1 1 108 2L 3315055 3315073 TGATTATCGATCCTACGGG 57 3315210 3315287 ATTATGGAGTTGCTCACAC 57 NA Drosophila melanogaster 50 CG31938 FBgn0051938 FBtr0077883 1 1 1 83 2L 1729106 1729125 CAGCCTCCATATCGTATCTC 59 1729171 1729189 TCGCGTAAATCAGATCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33502 FBgn0053502 FBtr0070055 1 1 1 102 X 21482189 21482207 GGAGAGCTTGAAGTTCCTG 59 21481054 21482123 CAATTTGGCCAAAGGACTG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Arpc3B FBgn0065032 FBtr0074410 1 1 2 115 X 16999010 16999524 GAAGTTAAGTCGGAGGTGG 59 16998913 16998931 GTATAGAGCTCCTGCTGAC 58 NA Drosophila melanogaster 50 Rab39 FBgn0029959 FBtr0071072 1 1 1 132 X 7629366 7629812 GAGTTATCCGATCCCACAG 59 7629908 7629926 AGTAGGACTTGGTGATCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3587 FBgn0023521 FBtr0070321 3 1 1 80 X 1835080 1835165 TACTTATAATGCACCGCTG 57 1835209 1835227 AGGATCTCCTTGATGATCG 58 NA Nonspecific Drosophila melanogaster 50 Exp6 FBgn0001337 FBtr0070098 2 1 1 80 X 367846 367865 AAGCAATCGTTTGTATAGCG 58 367727 367804 ACTTGAGCGTATAGGTTGTC 59 NA Drosophila melanogaster 50 ewg FBgn0005427 FBtr0100577,FBtr0100579,FBtr0089441,FBtr0089442 2 4 8 173 X 165636 166462 ATGTTGATTACACCACGCA 59 165419 165437 GAACGGTTTGAATGGTAGC 59 NA Drosophila melanogaster 50 CG40769 FBgn0085516 FBtr0113929 3 1 1 136 U 8483497 8483515 TCCGTACCAGAAGTTTCTG 58 8483379 8483397 ACAAATGTGGTGACAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41012 FBgn0085553 FBtr0113966 2 1 1 67 U 6176421 6176439 TACTGGTACCGTATTGGTC 58 6176268 6176390 CAATACCGTACCAGGAACC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 plexA FBgn0025741 FBtr0089226,FBtr0089223,FBtr0089225,FBtr0089224,FBtr0100296 1 5 5 80 4 1036098 1036119 CTTAGTACCAAAGCAAAGTTCC 59 1035967 1036058 AGAGTTTCATACTTGTGCGA 59 NA Drosophila melanogaster 50 CG2003 FBgn0039886 FBtr0085870,FBtr0085871 1 2 2 63 3R 27815036 27815111 GAGATTCCTAAGACGGTGC 59 27815138 27815156 CATAGAAGAGCAGACCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31131 FBgn0051131 FBtr0085262 1 1 1 60 3R 23788448 23788467 TATTCCACAACAACTTCGAG 57 23788407 23788426 TGTCTGAATTGCTTTCTGTC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31184 FBgn0051184 FBtr0084505 3 1 1 98 3R 19822421 19822499 TCTTCACGCCTTTGATCAG 59 19822560 19822579 TACACCTCCTCATAGGTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Ino80 FBgn0086613 FBtr0083771 2 1 1 80 3R 15225985 15226004 CCCAGATTGATTCATGAGGA 59 15225858 15225945 GATATTGAACCGGTTATAGAGC 58 NA Drosophila melanogaster 50 rin FBgn0015778 FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082800,FBtr0082796 1 5 5 281 3R 9476209 9476538 CAACAAGGGTGACTTTGAG 58 9476897 9476915 TTCTCCGGGAAGTATAGGG 59 NA DesignNoJunction Drosophila melanogaster 50 Su(var)3-7 FBgn0003598 FBtr0082736 2 1 1 87 3R 9091969 9091987 CGATTACCAGCTTCCTACG 59 9092038 9092124 CGAATATCTGAAGAGCCCT 58 NA DesignRelaxed Drosophila melanogaster 50 CG7966 FBgn0038115 FBtr0082715 1 1 1 80 3R 8875355 8875443 GGGATAAGCAGTTCTATCCA 58 8875294 8875312 TTCCTCCATTCACAGTGTC 59 NA Drosophila melanogaster 50 CG32937 FBgn0052937 FBtr0082089 1 1 1 60 3R 5552441 5552460 TTTAGGCAGAATTGGTTGTC 58 5552400 5552420 CTTGGACGCTTTACTTAAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 by FBgn0000244 FBtr0082119 3 1 1 61 3R 5358371 5358390 CGAATACGAATGTGAATTCG 57 5358329 5358349 CTTTATCATATCGCCAGTACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rlb1 FBgn0014022 FBtr0082062 1 1 1 170 3R 5339111 5339188 GGTGATATCCAACAAGAAGGT 59 5339320 5339338 TTTAGAGCCTTCAACTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trbl FBgn0028978 FBtr0078235 3 1 1 69 3L 20393562 20393580 GGATTATCCTCAGGGACCT 59 20390561 20393529 TACTGCAGTTTCGTTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32202 FBgn0052202 FBtr0075051 3 1 1 67 3L 18675422 18675440 AAACTGTATGACAGGTGCC 59 18675468 18675550 ATCCCATTTACTCTCATCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17824 FBgn0036234 FBtr0076046 1 1 1 60 3L 11975952 11975970 CAATAACCAACATGTGCCT 58 11975991 11976012 CATTAGATAACCATGTTTGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33523 FBgn0053523 FBtr0091478,FBtr0091477,FBtr0091475 1 3 4 93 3L 5921732 5921813 ACGTACAAGATCCAAACCA 58 5921870 5921888 ATATGTTGATGGTGGCCTC 59 NA Drosophila melanogaster 50 CG15012 FBgn0035528 FBtr0073240 3 1 1 137 3L 4291805 4291884 GGGAGAACATATTTCTGATGAG 58 4291689 4291707 TTGTTGATGAAGTCGTCGA 59 NA Drosophila melanogaster 50 Pde8 FBgn0034886 FBtr0072074,FBtr0072077,FBtr0072075,FBtr0072076 2 4 5 102 2R 19562500 19562639 GTTAATAGATGCGTAGCGG 58 19562705 19562723 GAGTGGACATGACATTGTG 58 NA Drosophila melanogaster 50 wmd FBgn0034876 FBtr0113112 1 1 2 206 2R 19435019 19435037 TACTTTCTCATCTCGGCCT 59 19433333 19433351 CTGGAAGCTGTGTATCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 robo FBgn0005631 FBtr0071923,FBtr0071922 3 2 2 80 2R 18584450 18584533 AGAAATATGTAGAGGGCCTG 58 18584389 18584407 CCATAACAGTGATCGAGTG 57 NA Drosophila melanogaster 50 CG30273 FBgn0050273 FBtr0071866 3 1 1 245 2R 18554829 18554903 AACATCAAGCTGTATTGCC 58 18555182 18555201 ACTAATCGCTGTTGTAGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15127 FBgn0040730 FBtr0086482 2 1 1 75 2R 15568733 15568751 ATCGATCCCTACTATCAGC 57 15568676 15568694 GCATTATCACCTCTACGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6459 FBgn0034259 FBtr0086892 3 1 1 189 2R 13559529 13559547 AATGTGAACCATACGGTGG 59 13559300 13559377 AGAAGACATCGTTGTACTCG 59 NA Drosophila melanogaster 50 CG15704 FBgn0034103 FBtr0087136 2 1 1 98 2R 12167620 12167639 GATAGATAGCTCAGCTGAGC 59 12167700 12167718 CACTCCCAAGTACAGACAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG34229 FBgn0085258 FBtr0112422 3 1 1 174 2R 7729257 7729359 GTTTGAAGCAGTTTATGCTG 57 7729496 7729514 TGAAGGAGCATCTTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1868 FBgn0033427 FBtr0088542 2 1 2 81 2R 5471135 5471153 CTGCTAAAGAACCAACCCA 59 5471017 5471092 CAGGATCTGTAAGGATTTCCC 59 NA Drosophila melanogaster 50 CG8058 FBgn0033382 FBtr0088580 1 1 1 67 2R 5021254 5021272 TTACCTTATCCAGGTGGTC 57 5021374 5021392 TCAGATACTGCTTGAACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9253 FBgn0032919 FBtr0081468 1 1 1 247 2L 21143578 21143596 TTTGTGTCAAGCATGTGAC 58 21143807 21144014 TACCAAGGGCTTCAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)37Cb FBgn0086444 FBtr0081163 2 1 1 116 2L 19126464 19126482 GTACAAGAAGCAACTGCTG 59 19126306 19126384 ACGTATTCAGATCGCTCTC 58 NA Drosophila melanogaster 50 Lrr47 FBgn0010398 FBtr0080092 2 1 1 65 2L 10517935 10517953 CTTCGAGATATGCACCCTG 59 10517981 10518061 ATCTTGGTCAGCTTGTTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13130 FBgn0040965 FBtr0079974 3 1 1 77 2L 9983869 9983888 TTTCATTAGATGAGTTGGGC 57 9983811 9983829 GTCCTGGGATCGAAATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13397 FBgn0014417 FBtr0079711 2 1 1 81 2L 8411349 8411367 ATCAGTAGAGTAATCGGCG 58 8411207 8411305 TCTGAAAGCTTCGTAAATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8475 FBgn0031995 FBtr0079638,FBtr0079639 3 2 2 97 2L 8195698 8195716 ATGGAGCGTTGTCTATGTG 59 8195560 8195637 CATCAACTCCCTTTGAGCT 59 NA Drosophila melanogaster 50 Taf10 FBgn0028398 FBtr0077717 2 1 1 71 2L 2767998 2768016 GGACATCAGTGTTACACCC 59 2768051 2768069 GGCGAGTCTATATCCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RFeSP FBgn0021906 FBtr0077914 3 1 2 69 2L 1613031 1613049 GATGATGTAGGTACCGTGG 59 1612980 1612998 CACACGTTGCTAAAGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11023 FBgn0031208 FBtr0089256 1 1 1 101 2L 8527 8545 ATTCCGTTAACAGAGGAGC 59 8687 8706 TTCGGTAGTTATGTGTAGGT 57 NA DesignNoJunction Drosophila melanogaster 50 tRNA:CR30326 FBgn0050326 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:S7:23Ea FBgn0011984 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 roX2 FBgn0019660 FBtr0073515 3 1 2 60 X 11473568 11473586 ACGTTACTTCCGAGATCCT 59 11473609 11473628 CTACACTGGTTGGATTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077210 2 5 8 86 X 21247686 21250626 ACATGACGCTTATGAAATGG 58 21250675 21250693 CAAAGTGGCCATAGAAGGT 59 NA Drosophila melanogaster 50 CG32511 FBgn0052511 FBtr0077258 3 1 1 94 X 21027630 21027648 ATTGATTTGGGTGGTTCCT 59 21027554 21027572 TTGTTGTACGAGAAGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shakB FBgn0085387 FBtr0112569 2 1 5 126 X 20663759 20676865 AGTAGATCATCGGTGTCTC 57 20663651 20663669 TGGGATTTCCTACGTACTG 58 NA Drosophila melanogaster 50 CG14225 FBgn0031055 FBtr0074757 2 1 1 189 X 19567494 19568546 TAGGTACGGAACCAAAGTG 58 19567323 19567342 GTAGCTCTCCAGGTAAATCC 59 NA Drosophila melanogaster 50 Pfrx FBgn0027621 FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720 1 8 8 60 X 19401733 19401752 GTCGTCTACAATAACGAGGG 59 19401772 19401793 GGATGTTCATCAGGTAGTAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pfrx FBgn0027621 FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720 3 8 8 60 X 19402026 19402044 GTTAAACGAGATCGATGCC 58 19402068 19402086 CTTCTCCTTGATTTGCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8034 FBgn0031011 FBtr0074684 3 1 1 183 X 19177216 19177397 CCGTTCAATTATGGCTGAG 58 19177051 19177069 TGTGATCACAAATAGGGCT 58 NA Drosophila melanogaster 50 CG7358 FBgn0030974 FBtr0074652 1 1 1 225 X 18784509 18784786 AATACTGGCTCAGGTAAGC 59 18784302 18784320 AATATCGTCATCGCTGTCG 59 NA DesignRelaxed Drosophila melanogaster 50 Frq2 FBgn0083228 FBtr0074547,FBtr0074546,FBtr0074548 1 3 3 87 X 18095255 18095333 CCAGATGGTAGGACAACAG 59 18095383 18095402 GTTCTTGTCCATCTGATCGA 59 NA Drosophila melanogaster 50 dik FBgn0030891 FBtr0074510 1 1 1 63 X 17980256 17980274 ACAGATGCTCTCCAATGTG 59 17980301 17980319 GTCGAGGCTATCATACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dhc16F FBgn0013809 FBtr0074509 1 1 1 80 X 17959720 17959795 AAGACGATATTTCGAGCCT 58 17959838 17959857 CGATGGATAGTAGTTGACCT 58 NA Drosophila melanogaster 50 CG12993 FBgn0030840 FBtr0074437 2 1 1 119 X 17341273 17341292 ATCTTATACCTACTGCGGAC 58 17341079 17341191 TAGCTTCTGGCTAATTCGG 59 NA Drosophila melanogaster 50 CG4829 FBgn0030796 FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337 1 5 5 90 X 16718725 16718743 GAAGGGATACCATGTGTCG 59 16718794 16718964 CAAATAGATTTGGTACTGCTCG 59 NA Drosophila melanogaster 50 r FBgn0003189 FBtr0089734 3 1 2 164 X 16554458 16554476 TTCCAGATACCCAAGAACG 58 16554668 16559232 CACGGATTCCACATTAACTC 58 NA Drosophila melanogaster 50 Nup153 FBgn0061200 FBtr0113475,FBtr0074284 1 2 2 60 X 16494295 16494313 GGAAGAGGATGAATCCTCG 59 16494337 16494421 CATGATGGAGTTGTTGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 U2af50 FBgn0005411 FBtr0074234 2 1 1 86 X 16251574 16251592 TATTTCGACAGTGGTTCCG 59 16251440 16251525 AGTTCCTTAACCTGATCGTC 59 NA Drosophila melanogaster 50 CG9216 FBgn0030726 FBtr0074252,FBtr0074253,FBtr0074254 3 3 3 96 X 15989525 15989543 CTGTTGACGGATTTAAGGC 58 15989383 15989402 AAATATCATCTGCCTGAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 1 9 9 110 X 15788792 15788878 AGTTACCGAATATGGCGAG 59 15788952 15788970 TTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 Gbeta13F FBgn0001105 FBtr0074109,FBtr0074106,FBtr0074108,FBtr0074110,FBtr0074111,FBtr0074107 2 6 6 60 X 15755481 15755499 GCTCATTATCCGACTAAGC 57 15755523 15755614 CTCTTGTTAGATGGTGGCT 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 acj6 FBgn0000028 FBtr0074015,FBtr0100328 3 2 4 92 X 15271599 15271617 TCATCATCCTGCGATTCTC 59 15265710 15266194 GAAGATATCACCATTCTGACGT 59 NA Drosophila melanogaster 50 HDAC6 FBgn0026428 FBtr0074009,FBtr0074010,FBtr0074008 1 3 3 156 X 15229749 15230327 TTTACATTCATCCGTCCAC 57 15230447 15230465 CAATAACCGTTGTACTCGG 58 NA Drosophila melanogaster 50 CG15028 FBgn0030618 FBtr0112985 2 1 2 60 X 15075466 15075487 TTCTATGGGCCTCATTATTGTC 59 15075508 15075526 AGCGCAGTACATAGATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5599 FBgn0030612 FBtr0073964 1 1 1 111 X 14981973 14982054 AACATAGGAGTGATTGGCG 59 14982129 14982147 CATCCTTGTCGTTGAAACG 59 NA Drosophila melanogaster 50 rdgB FBgn0003218 FBtr0100195,FBtr0073822,FBtr0073823,FBtr0100194 2 4 4 83 X 13663021 13663039 TATTATCCGGACAATGGCT 58 13663084 13663187 GTCAATTACGTCTACGATACG 58 NA Drosophila melanogaster 50 CG15744 FBgn0030466 FBtr0073756 3 1 1 186 X 13182929 13183003 CAAGCTTAAGTTGCTCGAC 59 13183153 13183171 CGTCTCACAATGGAAATCC 58 NA Drosophila melanogaster 50 CG15927 FBgn0030389 FBtr0073647 3 1 1 60 X 12349257 12349275 CGGCCAATTATCAAGAGGA 59 12349299 12349317 ATCCATGGTGAATCGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dlic2 FBgn0030276 FBtr0073441,FBtr0073443,FBtr0073442 1 3 4 94 X 11049247 11055097 AAAGGAGAACCTATGGTCG 58 11055153 11055173 TGTCGCCTAATACTAGTACAG 58 NA Drosophila melanogaster 50 CG11126 FBgn0030265 FBtr0073433 1 1 1 80 X 11001472 11001490 GAGTTGGAGTAACGTGACC 59 11001534 11001614 TTGTAGGTGATGTTGCCAG 59 NA Drosophila melanogaster 50 CG9686 FBgn0030158 FBtr0071389 3 1 1 117 X 9774278 9774296 GTAGCGATCTCAAGGATCG 59 9774375 9774395 ATGTCCGGATTGATAATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gga FBgn0030141 FBtr0071363 2 1 1 137 X 9495408 9495426 ATCCACAAATGTGACGGAG 59 9496196 9496214 TACTTCTTCGATACCAGGC 58 NA DesignNoJunction Drosophila melanogaster 50 AP-1gamma FBgn0030089 FBtr0112965,FBtr0071298,FBtr0071295,FBtr0071297 2 4 6 118 X 9005030 9005125 CGAGCATGGATTTAATCCAG 58 9005449 9005467 GAATCTGTCGGATGAGGTC 59 NA Drosophila melanogaster 50 CG15364 FBgn0030075 FBtr0071261 3 1 1 60 X 8934287 8934307 ATACCGATCCATTTAGAACCG 59 8934329 8934347 GTGCATTACCCATTAGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33181 FBgn0053181 FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451 1 5 5 80 X 8408690 8409225 CCTCTGCATAAGTGGTCTG 59 8409269 8409287 ATCGGTTGAAACACTACGA 58 NA Drosophila melanogaster 50 sn FBgn0003447 FBtr0071101,FBtr0071100,FBtr0071102 2 3 3 84 X 7879376 7879471 AGGATCTGCATAAGATCGC 59 7879519 7879537 AATCGGTTCCATCATCCAG 59 NA Drosophila melanogaster 50 CG32727 FBgn0052727 FBtr0071056 2 1 1 61 X 7301629 7301649 AAGTATTAGTCCTAACGCTCC 59 7301672 7301690 TTCGATCCGGATGTTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 2 12 15 238 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978622 6978640 ATTGATCTACCTCTGTGCA 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG5928 FBgn0029836 FBtr0100295,FBtr0070871 3 2 2 81 X 5962703 5963094 ACACCTTTATTCAGAAGCC 57 5963139 5963157 TTGCCTCCTATGATATCCA 57 NA InUTR Drosophila melanogaster 50 CG2982 FBgn0029704 FBtr0070649,FBtr0070648 1 2 2 60 X 4214950 4214969 CTTGAGTGTTTACCAACAGC 59 4214992 4215010 AACCATGGGCATTAGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14270 FBgn0029665 FBtr0070590 3 1 1 60 X 3379092 3379110 GGAATGCTGTTCATGTACC 58 3379050 3379068 GAGTCATAAAGGCCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2650 FBgn0000092 FBtr0070504 3 1 1 61 X 2587207 2587226 AACATCACCGACTACAAGAC 59 2587107 2587126 AGATTCGACAGGTCAAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3078 FBgn0023524 FBtr0070415 3 1 1 172 X 2151521 2151923 AGATGATGGAGCACTTCAC 59 2151367 2151385 GTTCAGCGTTATCAATCGC 59 NA Drosophila melanogaster 50 CG4061 FBgn0025630 FBtr0070330 2 1 1 61 X 1968352 1968373 GCCGGTAAATATTGCTATTGAC 59 1968395 1968413 GCCACAAACGATGTATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF2B-epsilon FBgn0023512 FBtr0070350,FBtr0070351 1 2 2 60 X 1814874 1814893 ATTCCATGATGGATTGTCTC 57 1814772 1814790 CGCACTAGATGATTCTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 dor FBgn0000482 FBtr0070269 2 1 1 100 X 1561769 1561787 GATCTCTTACGCATCGAGG 59 1561850 1561931 TGATTGTAATCCCTCAGAGC 59 NA Drosophila melanogaster 50 O-fut2 FBgn0027791 FBtr0070296 2 1 1 60 X 1359770 1359790 CTTTACGACGTAAACATCTCC 58 1359730 1359748 CCATGCGAATATAGACGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SNF1A FBgn0023169 FBtr0070216,FBtr0070217,FBtr0070218 2 3 3 60 X 1271866 1271885 ATAATGCTCGAGGTATACCG 58 1271906 1271926 GATTGATGATCTTCCACTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41549 FBgn0085681 FBtr0114130 1 1 1 158 U 9114727 9114745 TATCTATGTGGCAGATGCG 59 9114587 9114607 CAGTACTCCTTGATAGTTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41012 FBgn0085553 FBtr0113966 1 1 1 126 U 6176480 6176498 GTAATCGGTCCCGTAATCG 59 6176268 6176390 CAATACCGTACCAGGAACC 59 NA Nonspecific Drosophila melanogaster 50 CG40813 FBgn0085521 FBtr0113934 1 1 1 60 U 3136864 3136882 AGAACCATCTCGAGTTCCT 59 3136906 3136924 ATGGCTTTCTTGACTTCCT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40267 FBgn0058267 FBtr0113851 1 1 2 131 U 367388 367406 AAAGAAGGGTTACGAGTGC 59 326527 367255 ACGCCGTTTAGTCTTACAG 59 NA Drosophila melanogaster 50 Caps FBgn0053653 FBtr0091630,FBtr0091631 2 2 3 104 4 1259629 1259648 CTGTTGACATGGATAGAGTC 57 1259714 1265686 GCAAATTGTCATCAGTTCTC 57 NA Drosophila melanogaster 50 sv FBgn0005561 FBtr0089328 2 1 7 197 4 1128890 1128908 CGTCTATGCTTTACGACAG 58 1131505 1131922 AGGACGAATTTATCAAGCC 57 NA Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089211 3 4 7 199 4 1080210 1080228 TTGGGAGTACAAGCTAAGC 59 1079962 1080047 TGAGAAGAGTCCATTGCAG 59 NA Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 3 8 8 80 4 671648 672941 TAACAGCACAGATTGATGGT 59 671587 671605 TCAAATACGGGTGAAAGCT 59 NA Drosophila melanogaster 50 CG9935 FBgn0039916 FBtr0110907,FBtr0110906 3 2 3 105 4 660290 660308 AATCCTATCGAGAACGCAG 59 660145 660222 TTTCTATCACTGAGTCCCGA 59 NA Drosophila melanogaster 50 Eph FBgn0025936 FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086 1 4 5 108 4 640795 640889 GCTCAACAGATATCCAGGT 58 640961 640979 TTATAGTGTCGAGTTGCCG 59 NA Drosophila melanogaster 50 Asator FBgn0039908 FBtr0089108,FBtr0089109,FBtr0089107 2 3 3 80 4 499215 499233 AACAAACTCCCAAGTAGCC 59 498699 499173 AGCTTCGTATACTGTACATCC 59 NA Drosophila melanogaster 50 Ank FBgn0011747 FBtr0089172,FBtr0089171,FBtr0089174,FBtr0089173 2 4 4 85 4 142537 142555 TACAACATGAGGCTAGTGC 59 142417 142489 AATATCCGCCTGATTAGCAC 59 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156 3 9 10 82 4 103361 106346 ATCCTAAGATGGGCTTAACTC 58 106387 106408 CATATCTGAACTTAGCATTGGG 58 NA Drosophila melanogaster 50 snoRNA:Me28S-U1554 FBgn0086060 FBtr0114336 3 1 1 64 3R 22630251 22630272 GCCAGCGTAGATATTATATCAC 58 22630297 22630315 CTATGGTTATGCCTCTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me18S-G1189 FBgn0086058 FBtr0114334 1 1 1 62 3R 10197446 10197464 TAATGATGCTGGACTGAGC 59 10197402 10197423 CAGATTTCAAGATCTCAAGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me18S-G1358a FBgn0086053 FBtr0114329 1 1 1 60 3R 5179997 5180016 TGATGATATTTCCATGCACC 58 5180038 5180057 GAAATCCATAATCTGCACGA 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 ttk FBgn0003870 FBtr0085827,FBtr0085825,FBtr0085829 1 3 6 128 3R 27554189 27558647 AACAGCACTTCCGTTACTC 59 27558739 27558757 GGAAATCGTTTCCGAAGGA 59 NA Drosophila melanogaster 50 CG1746 FBgn0039830 FBtr0085773,FBtr0085774,FBtr0085772 2 3 3 207 3R 27043629 27043647 AGTACTTGCGACCATTGAG 59 27042878 27042897 AATACTGTTCCGATACCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9702 FBgn0039787 FBtr0085664 1 1 1 115 3R 26407048 26407066 ATACATCGCCTTCATTCCC 59 26407145 26407221 CTAGATCGGAACGTTTGCT 59 NA Drosophila melanogaster 50 tmod FBgn0082582 FBtr0113483 2 1 7 102 3R 26398781 26399968 CAACATCGACAGAATCTTCC 58 26400033 26400051 GTTATAGGCGACCAGATCC 59 NA Drosophila melanogaster 50 tmod FBgn0082582 FBtr0085659,FBtr0085661,FBtr0085663,FBtr0085658,FBtr0085662,FBtr0085660 3 6 7 190 3R 26398542 26398560 CACCATCGAGGAGTTTAGG 59 26398787 26402912 GTTTCACACGTATTCTGTCG 59 NA Drosophila melanogaster 50 CG7911 FBgn0039735 FBtr0085606,FBtr0113308 2 2 2 65 3R 25829745 25829763 AGTGACCTTCAAACTGGTG 59 25829613 25829716 AAGTTCATCTCGACCTTGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 DopR2 FBgn0015129 FBtr0085468 2 1 2 210 3R 25466369 25466387 ATCCTGTGATTTACGCCTG 59 25464739 25464757 TATATGTAGGTCTGCTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 Sirt7 FBgn0039631 FBtr0085364 2 1 1 60 3R 24883993 24884011 CAAGTACGCGTATTCTGGT 59 24884035 24884053 AATATTGAGATCCGCTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1951 FBgn0039623 FBtr0085342 1 1 1 104 3R 24855146 24855167 CGATTATAAGCCTCATCAAGGA 59 24855230 24855309 CGTCTTTGGGTTTATTGTCTC 59 NA Drosophila melanogaster 50 CG4951 FBgn0039563 FBtr0085265,FBtr0113298 3 2 2 137 3R 23778973 23778991 AACCAAGATCAAGAGCGAG 59 23778796 23778872 GATCTGGAATTCTGCTGTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG12428 FBgn0039543 FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236 3 5 5 150 3R 23529755 23529773 ATCCGATGTACACCAAGAG 58 23529567 23529642 TTAATGAACACAGCTTCCGA 59 NA Drosophila melanogaster 50 Gr98c FBgn0046886 FBtr0085187 2 1 1 92 3R 23371393 23371462 GTTATTTGGAGGGATGCTG 58 23371518 23371536 TGTCTGTAGCCGATTAGAG 58 NA Drosophila melanogaster 50 CG13652 FBgn0039284 FBtr0084781 2 1 1 95 3R 20986659 20986677 GTCATCTCCTAGTCGTTGG 59 20986736 20986754 CACTGGACATTAGAGAACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11820 FBgn0039270 FBtr0084765 2 1 1 64 3R 20891643 20891661 GACTTGTGACCAAACAGTC 58 20891744 20891767 CTCGGCTATAATCTCTTCTATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11790 FBgn0039265 FBtr0084760,FBtr0084761 1 2 2 89 3R 20874456 20874474 TGAGAAGGGATATACCCAG 57 20875008 20875026 AAATAACTTTGCAGTGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6422 FBgn0039261 FBtr0113281,FBtr0084795,FBtr0084794 2 3 3 94 3R 20864033 20864153 TGAAGTCTCTGGCAATGAC 59 20863957 20863978 CCTTGTTCATATTGTTCCATGG 59 NA Drosophila melanogaster 50 CG13624 FBgn0039209 FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795 1 6 6 107 3R 20386540 20386627 CATTAAGGTGTACAAGCACAG 59 20386453 20386471 CTTAGCTTGTCCAGTTCCT 58 NA Drosophila melanogaster 50 CG13618 FBgn0039203 FBtr0084643 2 1 1 78 3R 20352352 20352370 GAACTTCGACAAATGCCTG 59 20352473 20352492 GATGCCAAATTCCCTATTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Myo95E FBgn0039157 FBtr0100517,FBtr0100518,FBtr0100519,FBtr0100520 1 4 7 115 3R 19985037 19985205 TACCCATTACCCGTATAACG 58 19984883 19984901 ATTTCGATACAGCTTGAGC 57 NA Drosophila melanogaster 50 CG31139 FBgn0051139 FBtr0084321 1 1 1 60 3R 18573541 18573559 AATACGCAAAGTTGCTCAC 59 18573499 18573517 TTGGATACCTCCAGAAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6969 FBgn0039005 FBtr0084303 2 1 1 106 3R 18523289 18523367 TTCACCAAAGCTCAATTGG 58 18523437 18523455 AGTCTCTGCATAACATGCT 58 NA Drosophila melanogaster 50 CG5315 FBgn0038984 FBtr0084283,FBtr0084284,FBtr0084282 2 3 3 83 3R 18370411 18370492 CTAATTCTGATGGGCCTCC 59 18370346 18370364 AAACTTTCCAGGGAACCAG 59 NA Drosophila melanogaster 50 sar1 FBgn0038947 FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208 2 5 5 60 3R 18184317 18184335 TTCACTACATTCGACTTGG 57 18185255 18185273 GGAAGTAGTCCTTCCAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 how FBgn0017397 FBtr0084178,FBtr0084177,FBtr0100514 3 3 3 230 3R 17869092 17888455 CTGGACGAAGAAATTGCAC 59 17894901 17894919 TCGGACCATAATCTTGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 3 22 22 87 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202451 17202547 TTGTTCAGGAATACGATAGC 57 NA Drosophila melanogaster 50 AP-2sigma FBgn0043012 FBtr0084103 3 1 1 158 3R 17095550 17095570 CCAAGTGGTATATGAACTTCG 58 17095352 17095370 AGATGCAGAAGTACAGACC 58 NA DesignNoJunction Drosophila melanogaster 50 H FBgn0001169 FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917 2 4 4 171 3R 16452162 16452180 AGTACCGACCAAATGTCTG 59 16452313 16452499 ACAGATTCAGTGGTAAGTCTG 59 NA Drosophila melanogaster 50 CG5191 FBgn0038803 FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905 2 5 5 89 3R 16396362 16396821 ATGTCGACAGGTAAATCCTC 59 16396873 16396891 ATCACGTTGTCTATCTCCC 58 NA Drosophila melanogaster 50 cic FBgn0028386 FBtr0083872 1 1 2 143 3R 16122208 16124110 CACAGATCTTAGAGCTGCC 59 16124217 16124235 AACATCTTCTGACTGGCTG 59 NA Drosophila melanogaster 50 CG5060 FBgn0038780 FBtr0113251,FBtr0083871 1 2 2 159 3R 16116160 16116178 AAGAAGTACAACGGGAAGC 59 16116301 16116697 TTGATCGACTGTCACTGAG 59 NA Drosophila melanogaster 50 CG4854 FBgn0038766 FBtr0083830 3 1 1 85 3R 15854485 15854503 ACAATGTCTACTCAGAGCG 59 15854552 15854635 GTGACAGATTTCGCATTCG 59 NA Drosophila melanogaster 50 CG7720 FBgn0038652 FBtr0083678,FBtr0083679 1 2 2 82 3R 14594437 14594455 ATCGTTTGCTTCATGTTCG 59 14587720 14594391 CTCTTGAACCTGAGATCGA 58 NA Drosophila melanogaster 50 fru FBgn0004652 FBtr0083651,FBtr0083649,FBtr0083643,FBtr0083652,FBtr0083648,FBtr0083642 2 6 13 84 3R 14256555 14256573 CCAGACGGACAATATCGAC 59 14252824 14252843 ATGATTTCGATCCAGTTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 Rpb4 FBgn0053520 FBtr0100273,FBtr0083604,FBtr0100275,FBtr0100274,FBtr0083603 3 5 5 84 3R 14079003 14079021 AGGAGACCATAATGTCTGC 58 14078875 14078893 GGACACAAATTACCCAGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7156 FBgn0038588 FBtr0083607 2 1 2 135 3R 14067507 14067525 ACAAGAGTCTCCAACTACC 58 14067313 14067331 ATAGCTTCTTAAGTGGCGA 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Ssdp FBgn0011481 FBtr0083612,FBtr0083611,FBtr0083613 2 3 3 74 3R 14020966 14020984 GCCATTCTGAAGATCAAGG 58 14020910 14020928 GTAGTCCGGATGATCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5285 FBgn0038490 FBtr0083409 1 1 1 60 3R 12976512 12976530 CAAGTTAAATGAGGCGCTG 59 12976554 12976572 GTTGTAGATGAACGGTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31269 FBgn0051269 FBtr0113401 1 1 1 60 3R 12953381 12953401 CTATACCTTCAGTACGTTCCC 59 12953423 12953441 AATCTTCATCGTTGCTCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cher FBgn0014141 FBtr0089471 3 1 4 114 3R 12932759 12932778 ACTACGATGACTTATGGTGG 58 12931524 12932682 TCATGATCACACTTGGCTC 59 NA Drosophila melanogaster 50 CG31275 FBgn0063261 FBtr0083346,FBtr0083345 1 2 2 60 3R 12576907 12576925 CTATTGGGTATGTGGTGTC 57 12576865 12576883 TTATCGAAGGATGTTTCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14892 FBgn0038447 FBtr0083327 3 1 1 172 3R 12421705 12421787 GTTCACAACGATCTCTTTAACC 59 12421919 12421938 TTTGAAAGCTTCATCAGCAC 59 NA Drosophila melanogaster 50 CG14880 FBgn0038422 FBtr0083321,FBtr0083320 2 2 2 129 3R 12187839 12187915 AATCTCCTAATTGGTCAGCG 59 12187729 12187747 ATTGGCTTCTGAAGGACTC 59 NA Drosophila melanogaster 50 Zip3 FBgn0038412 FBtr0083266 2 1 1 67 3R 12132588 12132606 GCAACAAGCTAATGGACAC 59 12132637 12132655 CGATTACTGGTAGATGGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL9 FBgn0038319 FBtr0083084 1 1 1 61 3R 11157206 11157224 CTTACGTACTCGAGCACTG 59 11157249 11157267 TTCGGGTGAACATACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsc70-4 FBgn0001219 FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056 1 6 6 61 3R 11071531 11071549 GGTATCCTCAACGTGACTG 59 11071571 11071592 GTAATGGTGATCTTGTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 foxo FBgn0038197 FBtr0082885 1 1 3 160 3R 9893473 9894124 TTTACATCGCAGCATACCA 59 9894248 9895159 GGAAGAAGCTGAAATTCGC 59 NA Drosophila melanogaster 50 primo-1 FBgn0040077 FBtr0091749,FBtr0091747 1 2 3 104 3R 9536371 9536453 TTTGTTTGGGCAACATCTG 59 9536285 9536303 CAATTGCTGCACTATCGAC 59 NA Nonspecific Drosophila melanogaster 50 Adgf-C FBgn0038173 FBtr0082821 1 1 1 167 3R 9534286 9534359 AGAGACCAATTGGTTTGGT 59 9534490 9534508 ACCTGATTCGAAATGGGAC 59 NA Drosophila melanogaster 50 Act87E FBgn0000046 FBtr0082786,FBtr0082785 1 2 2 60 3R 9252473 9252492 CAGAAGGACTCCTATGTTGG 59 9252515 9252533 ATTTCAGGGTGAGGATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8795 FBgn0038139 FBtr0100149,FBtr0082774,FBtr0082773 3 3 3 132 3R 9157366 9157631 TTGTTATGCTCAGGAATGC 58 9157252 9157270 TAATGGTTAGAACTGTCGC 57 NA Drosophila melanogaster 50 sim FBgn0004666 FBtr0082711,FBtr0082710 3 2 2 92 3R 8900715 8900807 TCCGGATTTAAGGTGATACAC 59 8900861 8900879 GAGATTCTGGATGAGGCTG 59 NA Drosophila melanogaster 50 CG5724 FBgn0038082 FBtr0082657 3 1 1 60 3R 8565633 8565653 CAAATGAGTGATACCATTGGC 59 8565674 8565693 TGGATAGGATCATGTTGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10096 FBgn0038032 FBtr0082603,FBtr0082604 1 2 2 95 3R 8217634 8217652 TACGTATACCAAGGCTCTG 58 8217502 8217575 TAGCTGGCAATTATGACAC 57 NA Nonspecific Drosophila melanogaster 50 Taf12 FBgn0011290 FBtr0082440,FBtr0082441 1 2 3 73 3R 7504709 7504727 TATCTGGTGGTAGCAAGTC 58 7504583 7504672 TTTGGTAAGCATGGGAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082453,FBtr0082454 1 2 6 108 3R 7418337 7419052 ATTTCATTGGTGATGCACC 58 7418247 7418265 CTCTTCATGTGGTTCTTGC 58 NA Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082455,FBtr0082453,FBtr0082456,FBtr0082454,FBtr0082452 2 5 6 157 3R 7419367 7419385 GCCGAGAAAGATAATGGAG 57 7418220 7418238 TCTGTGTTCTGACCAAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5276 FBgn0037900 FBtr0082390 1 1 1 60 3R 7257825 7257843 TTAACTATCACTTCGCCCT 57 7257866 7257885 AAGTAGAAGAGTAGGACGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL40 FBgn0037892 FBtr0082384 2 1 1 165 3R 7234212 7234230 ACTTTCAGATCATCGACCG 59 7234358 7234377 CTGACGTAATCCTTAATGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Adk3 FBgn0042094 FBtr0082331,FBtr0082330 2 2 2 66 3R 6713944 6713962 TGATCTGCAAGAACCATGG 59 6713896 6713914 TTTATGATGTTCTGGCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cap-H2 FBgn0037831 FBtr0082273,FBtr0082270,FBtr0082272,FBtr0082271 3 4 4 118 3R 6589992 6590011 TGAGCTATCCTATTCTGCTG 58 6590092 6590179 CTTAATAGGAAGGCGTGCT 59 NA Drosophila melanogaster 50 mthl11 FBgn0045443 FBtr0082247 1 1 1 136 3R 6227924 6227942 ATTATCGTGTGGAGCTCTG 59 6228039 6228119 GACCATCCATTGGTAAATATCC 58 NA Drosophila melanogaster 50 CG11870 FBgn0037804 FBtr0090031,FBtr0090030,FBtr0090033,FBtr0090032 3 4 4 100 3R 6117481 6117566 CCACATCTACGAAGTATTTGAG 58 6117627 6117645 GAACCTTCCTTTCAGACAG 57 NA Drosophila melanogaster 50 CG3999 FBgn0037801 FBtr0082225 1 1 1 89 3R 6077679 6077900 CAAACCTCTGAATGAGCAC 58 6077953 6077971 TAACCCATTCCGATGTAGG 58 NA Drosophila melanogaster 50 Fancl FBgn0037781 FBtr0082203 1 1 1 60 3R 5877990 5878008 TTCTCTTGCTTGATCACAG 57 5877948 5877966 CTCTTGGTCAGCATTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16790 FBgn0037713 FBtr0082112 2 1 1 91 3R 5395399 5395417 GATGAATTCTCCCGATCCT 58 5395265 5395283 TCCTCATTCGTGTAGATCC 58 NA DesignNoJunction Drosophila melanogaster 50 betaTub85D FBgn0003889 FBtr0082046 1 1 1 61 3R 5234624 5234642 CAGAGGTCTCAAGATGTCG 59 5234581 5234599 TGAATAGCTCCTGAATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8129 FBgn0037684 FBtr0082026 1 1 2 143 3R 5191538 5192111 TATACAGGCAGCTTCAAGG 59 5192216 5192236 TGGTATATTGAGTTTCCAGCC 59 NA Drosophila melanogaster 50 CG11984 FBgn0037655 FBtr0082008,FBtr0082009,FBtr0082007 3 3 3 165 3R 4837857 4837875 CATTGCGGAACTGTTATCG 59 4837615 4837633 CGATGTTGAGACTATGGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG11776 FBgn0037631 FBtr0081935 2 1 1 82 3R 4622476 4622494 TCCAAAGACTGACTAACGA 57 4619075 4622433 CTTTATTTCCTCTAACTGGGTC 58 NA Drosophila melanogaster 50 CG9626 FBgn0037565 FBtr0081864 2 1 1 82 3R 4123030 4123109 GCACGAGAAAGAGAAATTGTC 59 4122968 4122986 CATCCGAAGTCTTGACCTC 59 NA Drosophila melanogaster 50 CG2747 FBgn0037541 FBtr0081818,FBtr0081817 1 2 2 96 3R 3848206 3848353 CCATTGAGGATCAGATGGAG 59 3847622 3847640 CATGGATCGTGCTCTAAGG 59 NA Drosophila melanogaster 50 CG10053 FBgn0037490 FBtr0081576 3 1 1 62 3R 3073640 3073658 AGATGAATCACAGAGCGAC 59 3073683 3073702 TATGGTTCTTGCTTAGGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 zen2 FBgn0004054 FBtr0081671 2 1 1 60 3R 2569596 2569616 GTCTTCGGAGAAATCAAAGAG 58 2569556 2569577 TAGTTCGATTAGCTGAAGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf1 FBgn0010355 FBtr0081686,FBtr0081685 3 2 3 172 3R 2479836 2480202 GGATGAAGATCTCCAATGC 57 2480338 2480356 CTGTCTTGATGTTCTTGGG 58 NA Drosophila melanogaster 50 CG15185 FBgn0037449 FBtr0081675 2 1 1 60 3R 2353722 2353743 GATACTATTAGCCATTCACCTG 58 2353763 2353782 TGTGATAACAGATTACGCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Neurochondrin FBgn0037447 FBtr0081729 2 1 1 60 3R 2295081 2295099 TAATTCTCTGGAGGGTCAG 57 2295123 2295141 CAGAATATCTCCACAGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9727 FBgn0037445 FBtr0081730 1 1 1 112 3R 2280733 2280751 CATTAATTGGGTGCGTTCC 59 2280427 2280445 ACAGAGGTTTGATGCTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31559 FBgn0051559 FBtr0078616 3 1 1 70 3R 1982425 1982443 GTATGTGGTACAGTTCTCG 57 1982373 1982391 GTTTCTCCGGAATCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1193 FBgn0037375 FBtr0078628,FBtr0078627 3 2 2 192 3R 1611777 1611992 GACAATACTCCAGGAAGCA 58 1612148 1612166 GTATTTCGAGGTCAGGGTC 59 NA Drosophila melanogaster 50 Rga FBgn0017550 FBtr0078742 2 1 2 173 3R 1435513 1435532 GAATAACTTCCACGTGTTCG 59 1434729 1435377 TTCACCATGCCAACATAGG 59 NA Drosophila melanogaster 50 Nmdar1 FBgn0010399 FBtr0078763 2 1 1 91 3R 1341850 1341941 CAATAAAGCACCTCAACTTCG 59 1341779 1341798 CTTGATGGGATTCTTGTCCA 59 NA Drosophila melanogaster 50 CG12590 FBgn0037294 FBtr0078773 3 1 1 63 3R 985904 985922 GTTCGATCTCCAAGGACTC 59 985949 985967 GTGGGAAAGATTCATGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34357 FBgn0085386 FBtr0112567 2 1 2 80 3R 321845 322206 CTTCAACTCCGTGTATGAG 57 321783 321802 AGCATTTGGAACATAGTGTC 58 NA Drosophila melanogaster 50 CG40044 FBgn0058044 FBtr0111164 1 1 1 80 3L 24003293 24003312 GTCTGCTACCTTCTATTCAC 57 24003355 24003663 ACACCATAAAGGTTAACGC 58 NA Drosophila melanogaster 50 CG33769 FBgn0053769 FBtr0091770 3 1 1 60 3L 22641442 22641460 CTGTCCCATAAGAGAAGGA 57 22641484 22641502 CACATTGTTCGCATCTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12972 FBgn0037076 FBtr0078403 3 1 1 60 3L 21338399 21338417 TCAGATTAACGCTGGAACC 59 21338357 21338375 GATAATGGCTAGATGCGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12977 FBgn0037052 FBtr0078321 3 1 1 168 3L 21178403 21178422 CAACATCTGGAAAGAATCGC 59 21178102 21178273 GGTAAAGGTTTGATGTCCCT 59 NA Drosophila melanogaster 50 CG6020 FBgn0037001 FBtr0078201 2 1 1 207 3L 20489430 20489448 GATATCTACGGATCCGAGG 58 20489619 20489705 GATAGCGTTTAGGTCCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 Las FBgn0029158 FBtr0078229,FBtr0078228 1 2 2 145 3L 20424694 20424925 CGATTATGCTTATGGGCGA 59 20424567 20424588 CAGAACAATGTAATCCAATCCC 59 NA Drosophila melanogaster 50 CG33969 FBgn0053969 FBtr0100010,FBtr0100011 3 2 2 70 3L 20385772 20385790 CTATACACTGACAACGGTC 57 20385569 20385587 CTAAACACCAATTCCTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6933 FBgn0036952 FBtr0074855,FBtr0074854,FBtr0074853 1 3 3 60 3L 20211887 20211905 GTACCCATAACCGATGTGG 59 20211845 20211863 TTCTTGCAACCCTCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17732 FBgn0036923 FBtr0074898 1 1 1 60 3L 19976272 19976291 AATCAGCTATTCCACAAGCA 59 19976314 19976332 AATGATGTTGCAGGTATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9372 FBgn0036891 FBtr0074945 2 1 1 134 3L 19600800 19600818 TTCAACACCTACATCTGGC 59 19600916 19601111 CAGGTTAACCTCCATGAGG 59 NA Drosophila melanogaster 50 CG9279 FBgn0036882 FBtr0074976,FBtr0074975 2 2 2 80 3L 19535272 19535407 GCTTCCAAAGAATCCAGTG 58 19535210 19535229 GGAGACAAGGTTACTTCTCC 59 NA Drosophila melanogaster 50 Cpr76Bb FBgn0036879 FBtr0074933 1 1 1 107 3L 19513048 19513066 AGTACCAATTCGACTACGG 58 19513137 19513155 ATTCCTTGAGGGAGTAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9449 FBgn0036875 FBtr0074980,FBtr0110902 1 2 2 75 3L 19487943 19487964 GTAAATGAGACCTACTATCCCT 58 19487491 19487509 TACCAATGTTGAACAGCTC 57 NA DesignNoJunction Drosophila melanogaster 50 fz2 FBgn0016797 FBtr0112890,FBtr0075029,FBtr0075028 1 3 3 60 3L 19138170 19138189 CTGCTTACCTACTTCTTTGG 57 19138129 19138147 AGGTGAAACTGAGGATCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4893 FBgn0036616 FBtr0075425 1 1 1 149 3L 16348814 16348832 AAATTCCTGGACGATCTGG 59 16348417 16348435 GTACTTGCTCGTATCCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17027 FBgn0036553 FBtr0075516 2 1 1 60 3L 15974455 15974473 TGAAGCCGGATCTAATCTG 58 15974497 15974515 AGAAGGTCTTCGATCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dbo FBgn0040230 FBtr0075505 2 1 1 161 3L 15822963 15823119 GCGATATGATCCCAGACAC 59 15823244 15823262 TTGGTCAGTGGATTGTAGC 59 NA Drosophila melanogaster 50 CG6151 FBgn0036533 FBtr0075541 1 1 3 239 3L 15806620 15806638 AGGATTTGTGGTGATGCTC 59 15805986 15806352 TCTCGAGAAGCTTTCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 yellow-k FBgn0036504 FBtr0075556 2 1 1 60 3L 15514410 15514430 GATCTATACAGTACGGTGGAC 59 15514452 15514470 GTTTGCTTGCTAATTCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7255 FBgn0036493 FBtr0110881,FBtr0100360 1 2 3 131 3L 15301821 15301841 TTTAGAGTTCCCTTTGTACCG 59 15301932 15302037 AAGAAATACGGGTATACCCAC 59 NA Drosophila melanogaster 50 CG10006 FBgn0036461 FBtr0075628,FBtr0113171 1 2 2 84 3L 14989470 14989489 GATAATGGAGTTTGCAAGCA 58 14989536 14989611 CATAGATCCAAGCGTACCA 58 NA Drosophila melanogaster 50 Trl FBgn0013263 FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704 2 8 9 236 3L 14747639 14750011 TGCTAAAGAATACACCATGC 58 14747422 14747440 GTTGTGGAATCATGTGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG9628 FBgn0036433 FBtr0075678,FBtr0075677 3 2 2 81 3L 14620523 14620542 TTTGCTATGTGACCTTTGGA 59 14620586 14620664 CATGGAGTCAAATCACCGA 59 NA Drosophila melanogaster 50 CG13479 FBgn0040811 FBtr0075721 1 1 1 149 3L 14561013 14561031 GAATATCCCACAGCAGGAG 59 14560882 14560900 TACAGAACCTTCTGCACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fbp1 FBgn0000639 FBtr0075749,FBtr0075750 1 2 2 60 3L 14088468 14088486 CTTCACCATTGACATGGAC 58 14088426 14088447 GAAGATGCGAATAATAGCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32132 FBgn0052132 FBtr0075800 2 1 1 105 3L 13865704 13865722 CAATACCGCTAACGAAAGC 59 13865617 13865635 GGTTGATGATTGCTGAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10725 FBgn0036362 FBtr0089323 3 1 1 104 3L 13431284 13431361 GTGCATGAATGAGATAGCTG 58 13431427 13431446 GATCCAATACACTCGACCTC 59 NA Drosophila melanogaster 50 CG10713 FBgn0036360 FBtr0075855 2 1 1 148 3L 13423597 13423615 AGGATCGCACTACAATCAC 59 13423467 13423485 GATGGTGGTAGCTGTAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12520 FBgn0036324 FBtr0113169 3 1 1 60 3L 12894791 12894809 CTGCCAAATCTCAGTTGAC 58 12894749 12894769 GTCTCCTGCATAGTAAGACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10948 FBgn0036317 FBtr0075939,FBtr0075938 2 2 3 108 3L 12842192 12842272 CAACTCTTAATGCGGATGG 58 12842102 12842120 CTTATTGTGGGAGGAGGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG10632 FBgn0036302 FBtr0114611 2 1 4 113 3L 12533237 12533498 ATGTCTACAAGGCCAATCG 59 12533142 12533160 ACTTTGCATACTCACTGCT 59 NA Drosophila melanogaster 50 CG17824 FBgn0036234 FBtr0076046 3 1 1 60 3L 11975952 11975971 CAATAACCAACATGTGCCTC 59 11975991 11976012 CATTAGATAACCATGTTTGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11714 FBgn0036170 FBtr0076156 2 1 1 60 3L 11513424 11513442 TATTCAATGCCACCAAGTG 57 11513301 11513400 AGCACAACATATCTGGCTC 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 Mnf FBgn0036134 FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228 3 5 5 145 3L 11108508 11108591 CAGTACAGTAGTGGCAGTC 59 11108381 11108399 ACATGGTTCCTCTTTAGCG 59 NA Drosophila melanogaster 50 CG32075 FBgn0052075 FBtr0076240 1 1 1 65 3L 11055918 11056017 GGAAATTAGACAAGCATACCG 59 11055873 11055891 TTTATTGAGCCCAAGGGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385 2 8 8 112 3L 9825956 9826035 GAGTTAACCGGGACTACAC 59 9826111 9826129 TCTTTCCCAAACTTAGCCG 59 NA InUTR Drosophila melanogaster 50 Ilp2 FBgn0036046 FBtr0076329 1 1 1 72 3L 9793167 9793185 TAACTCGATATCGGAACCG 58 9793221 9793239 CAGGGAATTGAGTACACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14168 FBgn0036044 FBtr0076374 2 1 1 151 3L 9786747 9786765 AGAATCTCTACTTGCCCGA 59 9786487 9786632 CTTTGGGAAGATCCCAAGG 59 NA Drosophila melanogaster 50 CG18177 FBgn0036039 FBtr0089410,FBtr0089411 2 2 3 139 3L 9721701 9721819 CCCTGGACTTTATTAGATCAC 57 9721919 9721938 ATAAAGTTGAAGCGAGTGAG 57 NA Drosophila melanogaster 50 Clk FBgn0023076 FBtr0100132,FBtr0076785 3 2 3 173 3L 7761742 7761819 AATCATAATGAGGCCACCG 59 7761587 7761606 GGAGGTAATACTTTCCGAGG 59 NA Drosophila melanogaster 50 CG7492 FBgn0035807 FBtr0076821 2 1 1 206 3L 7646733 7646752 TACTTAGTGAACTGCAGTCG 59 7646486 7646564 AAGAATGTACTTCACCCGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG33276 FBgn0053276 FBtr0114530 2 1 1 61 3L 7633380 7633398 TGAATTGAACTTGGACGGT 59 7633274 7633292 CATGCATCCACTTAAGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7526 FBgn0035798 FBtr0076799,FBtr0076800 2 2 2 93 3L 7562064 7562181 ATATACGTCAGATCTGCCA 57 7562238 7562256 TTTGTGAAACATCGGAGAG 57 NA Drosophila melanogaster 50 melt FBgn0023001 FBtr0076917 1 1 2 123 3L 7134588 7134606 CAGATTATGCGTGATCCTG 58 7134693 7134817 CATTGGAAACCTCAATGCT 58 NA Drosophila melanogaster 50 CG14821 FBgn0035719 FBtr0076895,FBtr0113150 2 2 2 97 3L 6939460 6939480 AGCTAAGCAATAAGGACATCC 59 6939538 6939610 TGATATTTCCTGGCTTTGCA 59 NA Drosophila melanogaster 50 SP1173 FBgn0035710 FBtr0076960,FBtr0076961,FBtr0076959,FBtr0076958 3 4 4 144 3L 6683603 6683621 CATCATGGAGACCATCGAG 59 6683417 6683495 AAAGCCTTTGCCTAATCCA 59 NA Drosophila melanogaster 50 Cpr65Ay FBgn0085300 FBtr0112466 2 1 1 60 3L 6151439 6151513 TCATTTCGGATTTCACACC 58 6151397 6151415 TACTGTGTACGTTATGGCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Tektin-C FBgn0035638 FBtr0077115,FBtr0113147 1 2 2 68 3L 5788652 5788670 AGGATTTGTCCAAACAGCA 59 5788197 5788215 CCAGATTCTCGTACGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 lama FBgn0016031 FBtr0077161,FBtr0077160,FBtr0077159 2 3 3 96 3L 5338825 5338843 GAACTTATCCGGATTGGGT 59 5338687 5338766 GAAATGGTATTGGACCACTG 58 NA Drosophila melanogaster 50 CG32241 FBgn0052241 FBtr0073330 3 1 1 60 3L 4465713 4465734 CAACCAAGAAGGTTATCTACAC 58 4465674 4465692 GTGTAGACAACCTTCTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12607 FBgn0035545 FBtr0073302 2 1 1 83 3L 4447578 4447907 TCCAGTCTATAACGAAACCA 58 4447953 4447971 GTCTCTTTGTACTTCGCTC 57 NA InUTR Drosophila melanogaster 50 CG11347 FBgn0035542 FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141 3 6 6 227 3L 4419446 4419464 GTATTAGGTCCACCCAGGA 59 4419654 4419749 TGTTCTTGCTCTTCTGACTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG1311 FBgn0035523 FBtr0073232 1 1 1 80 3L 4279327 4279402 GGATTAGCTTTGCTCATTTCC 59 4279444 4279462 AACACAGATGATCCAGGAG 58 NA Drosophila melanogaster 50 CG10853 FBgn0035478 FBtr0073164 1 1 1 212 3L 3948141 3948159 TATCCCAAAGAAGGAGGTG 58 3948487 3948505 ATTTAAAGTGAGCAGGCAG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Aats-pro FBgn0027082 FBtr0072948 3 1 1 70 3L 2650953 2651029 TTTCGTTAAGGTGAATGCC 58 2650901 2650922 GCGATACATAATGGTATTCGTG 59 NA DesignRelaxed Drosophila melanogaster 50 msn FBgn0010909 FBtr0072958,FBtr0072957,FBtr0072960,FBtr0072959,FBtr0072956 1 5 5 102 3L 2556720 2556800 GCAATAGAGATACGTTCCG 57 2556636 2556654 ATACTTTGTCGTTTCGCTC 58 NA Drosophila melanogaster 50 CG15877 FBgn0035337 FBtr0072899 2 1 1 60 3L 2377281 2377300 GTAGATCAACAGGAGGTTCC 59 2377185 2377204 CTTCTGATTCTTTATGCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9004 FBgn0035336 FBtr0072890 3 1 1 60 3L 2375435 2375453 CCCACTGGAACTGAAAGAG 59 2375474 2375495 GACTGCATTTAGAATATCGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cue FBgn0011204 FBtr0072706 2 1 1 194 3L 1504151 1504169 ATCGTTCAAGGAATCCGTC 59 1503917 1503993 ATCGAAACAGGGAGTTTCG 59 NA Drosophila melanogaster 50 CG16971 FBgn0035114 FBtr0072497 3 1 3 154 3L 225744 225763 TTAATGGCAACGATGATGAG 58 226794 226812 CATTTATACATGCCCGCAG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Mkp FBgn0083992 FBtr0110977 3 1 2 70 3L 183758 183777 GATCGTTGTTACTTTCTGCA 58 183652 183670 ATAAACATTCGAGCTGCAG 58 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 snoRNA:Psi28S-1153 FBgn0083006 FBtr0113500 1 1 1 64 2R 9445129 9445148 CACAGTTATGCAATAAACGC 58 9445084 9445102 CAGATGTTAGTCAACACGT 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6a15Psi FBgn0033303 FBtr0088689 3 1 1 60 2R 4457403 4457424 GGAACTTCATTACTGATACCTG 58 4457444 4457463 GATGTGGATATAAGTGCGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 emp FBgn0010435 FBtr0072400,FBtr0072402,FBtr0072401 1 3 3 88 2R 20865282 20865300 GACAACATGTGCTTCTGTC 59 20865154 20865230 ATGGGAGAGTCGTATTGAC 58 NA Drosophila melanogaster 50 CG30427 FBgn0043792 FBtr0072413 1 1 4 81 2R 20817347 20817365 GTGATACCTGTGGACATCG 59 20817231 20817303 TCTGAAGAGGTCTCTTCTCC 59 NA Drosophila melanogaster 50 Mov34 FBgn0002787 FBtr0072290 3 1 1 60 2R 20291457 20291475 CCACCAGATTGTCTACCAG 59 20291498 20291517 GTCATTGGTTATATCGGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 or FBgn0003008 FBtr0072152 1 1 1 88 2R 19856024 19856100 CCTCTCAGAACTGGTAATGG 59 19856151 19856169 TGACGATCTTGTTCTGCTC 59 NA Drosophila melanogaster 50 fzr2 FBgn0034937 FBtr0072146 1 1 1 60 2R 19838563 19838581 CTCAGCATCTTCAAGAGAC 57 19838605 19838623 CATCGAGTATCTTGTACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5549 FBgn0034911 FBtr0072125 2 1 1 91 2R 19722050 19722068 GATATTCTTCGCACTGAGC 58 19722122 19722230 AAGTTCCACAATTGTAGCAG 58 NA Drosophila melanogaster 50 l(2)efl FBgn0011296 FBtr0072100 2 1 2 260 2R 19572571 19572589 GAAAGCATGAGGAGAAGCA 59 19572267 19572285 AAAGGATTGAGTCCTAGGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG17664 FBgn0034883 FBtr0072107,FBtr0072108 3 2 2 66 2R 19491541 19491559 TATGAATCCAGTCCGATCC 58 19491493 19491511 GTAGATCCAGTGGTCATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k09913 FBgn0021979 FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961 3 4 4 100 2R 18958339 18958357 TGAGATGGGATTCGATGTG 59 18958497 18958515 GGAATCGAATAGTCTCGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3536 FBgn0034775 FBtr0071916 1 1 1 200 2R 18634397 18634416 GTATACTCAATATGGGCACC 57 18632233 18632560 AGTATTTGACTTTCTCCAGC 57 NA Nonspecific Drosophila melanogaster 50 CG4294 FBgn0034742 FBtr0071941 3 1 1 80 2R 18489310 18489461 TGACTACAGGTTAATCGACG 59 18489249 18489267 TTGTACAGGCGTATCTCCT 59 NA Drosophila melanogaster 50 CG3624 FBgn0034724 FBtr0071845 2 1 1 89 2R 18282134 18282152 AGGATGTGGTTCTCAAGTG 59 18282005 18282023 TGGAAATGACATTATCGCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6393 FBgn0034685 FBtr0071752,FBtr0071751,FBtr0071750 2 3 4 81 2R 17956169 17956254 GATAATTGAATTCCCAGCAGTG 59 17956296 17956314 GAAGGGAAGGATGTACTGG 59 NA Drosophila melanogaster 50 Sdc FBgn0010415 FBtr0071706 2 1 3 129 2R 17286781 17286799 AAGATCCGGACTATTCTGG 58 17286079 17286689 GTATGAGCTGTGTTTATGCC 58 NA Drosophila melanogaster 50 CG30394 FBgn0050394 FBtr0071614,FBtr0071613 1 2 2 81 2R 17209253 17209328 CTATACAGAAAGGGTCATACG 57 17209192 17209211 AGACAACGATGAAGATAGTG 57 NA Drosophila melanogaster 50 CG33704 FBgn0053704 FBtr0091692 1 1 1 118 2R 16837769 16837787 TCTATATCCGAGGAACTGG 57 16838139 16838157 CTCAGTCGACTACCTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9236 FBgn0034558 FBtr0071516 3 1 1 107 2R 16768355 16768373 AATGCATTGAGAAGATGCC 58 16768568 16768586 CCAGAAAGTCCTCAAAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 bl FBgn0015907 FBtr0086221,FBtr0086220 3 2 4 91 2R 16483146 16483164 TTCGCATACTGATTCCGAG 59 16483312 16485064 AGTGGCTTTATACTGAGTCC 58 NA Drosophila melanogaster 50 Ate1 FBgn0025720 FBtr0086318,FBtr0086317 3 2 3 90 2R 16144001 16144019 AACGAAATCCCTTACCCAG 59 16143529 16143947 AATTAAGCGCAGCTTTAGC 59 NA Drosophila melanogaster 50 ena FBgn0000578 FBtr0086584 3 1 6 106 2R 15048913 15048988 TTCTCAAGCAGGTCAATGG 59 15049057 15049076 TTTCTGAATCTCCAATCGCA 59 NA Drosophila melanogaster 50 botv FBgn0027535 FBtr0086579 3 1 1 132 2R 15017989 15018067 TAGAATCAAGAGCACCGTG 59 15018163 15018181 TTCTGTTTGCTCCCTAAGC 59 NA Drosophila melanogaster 50 CG15117 FBgn0034417 FBtr0086594,FBtr0100129,FBtr0086593 3 3 3 114 2R 15010499 15010518 TAACCCAGAATGTGATCGAC 59 15010305 15010422 TAAGCAGGTTGCATATGCA 59 NA Drosophila melanogaster 50 sano FBgn0034408 FBtr0086567,FBtr0086569,FBtr0086566,FBtr0086568 1 4 4 270 2R 14844990 14845235 CACATCAGGTACAAGAGTC 57 14845469 14845487 TATTGCTACTGGAACTCCG 58 NA DesignRelaxed Drosophila melanogaster 50 Gint3 FBgn0034372 FBtr0086656,FBtr0086654,FBtr0086655 3 3 3 106 2R 14546145 14546223 TATGACTGCAAACTCATTCC 57 14546058 14546076 AGCATTAGAAGGTCTTCCT 57 NA Drosophila melanogaster 50 CG30116 FBgn0028496 FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718 2 4 4 80 2R 14363162 14363624 GATTATCGCCTTATGAACGTG 59 14363102 14363120 CGATTGAAAGGCTTGTTCC 59 NA Drosophila melanogaster 50 Dp1 FBgn0027835 FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682 2 6 6 84 2R 14306395 14306413 GATCGATAAACGCATCCAC 58 14306458 14306564 GATGTTCACCTTATTATCCTCG 58 NA Drosophila melanogaster 50 Dp1 FBgn0027835 FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682 1 6 6 83 2R 14304949 14304967 CATCTCCTCGATCATGGAG 59 14305013 14305092 CGAATAGTGACCTTATCGCT 59 NA Drosophila melanogaster 50 imd FBgn0013983 FBtr0086725 1 1 1 173 2R 14298396 14298414 ATGATGCAGTCACAAGAGG 59 14297824 14298260 CAGCTGGTATATCACCTCTC 59 NA Drosophila melanogaster 50 pen-2 FBgn0053198 FBtr0089842 3 1 1 72 2R 14165340 14165358 AGCAGAGCCAAATAAAGAG 57 14165467 14165486 GCAGTTAGTACTATCAGCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG5033 FBgn0028744 FBtr0089551,FBtr0089550 1 2 2 80 2R 13679636 13679718 TGGTCTATAATGACCTGCTG 58 13679761 13679779 CAAACTCATCGCGTTTCTC 59 NA Drosophila melanogaster 50 CG6410 FBgn0034265 FBtr0086885 1 1 1 166 2R 13613099 13613117 AATTGAGCATCTGAAGCTG 58 13612892 13612910 TTATTCCCAAACTGTCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG30460 FBgn0050460 FBtr0087011,FBtr0087012,FBtr0087009,FBtr0087010,FBtr0113378 1 5 5 109 2R 12955106 12955124 AGTTAAGCAGTCTCGATGG 59 12954944 12955033 ATAAGGTGAGTTGCTGCTG 59 NA Nonspecific Drosophila melanogaster 50 CG15609 FBgn0034180 FBtr0114626,FBtr0087019,FBtr0114627 3 3 6 112 2R 12900873 12900892 GGCTTTAGTGAAATTACGGA 57 12900270 12900798 AACGAAGGTACACTTTGAG 57 NA Drosophila melanogaster 50 Psi FBgn0014870 FBtr0087073,FBtr0087072 1 2 3 169 2R 12752526 12752604 AGAATAAGCAGAACGGATCTG 59 12752377 12752396 ATACTGTGCATACTGAGTGG 59 NA Drosophila melanogaster 50 Menl-2 FBgn0029153 FBtr0100602 2 1 3 108 2R 12303123 12303199 CTGAGGTTAGATTGGGTCG 59 12303033 12303051 AAAGTCAGACAGTTGTTGG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Cdk5 FBgn0013762 FBtr0087350 1 1 1 131 2R 11457930 11457948 GATGAAGATCTTCCGTGTG 57 11457755 11457773 TTTAGCCTAGGTACCAGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG34123 FBgn0083959 FBtr0114580,FBtr0114579,FBtr0110833,FBtr0113485 1 4 6 80 2R 11152374 11152395 AACGACTATATGATTCTGGAGG 59 11152254 11152333 TACACCAATCTCGAATCCC 58 NA Drosophila melanogaster 50 CG8547 FBgn0033919 FBtr0087566,FBtr0087567 3 2 2 245 2R 10149673 10149994 CAGTCATTCGGAACTACCA 58 10149387 10149405 CTCGTACTCGTACATTCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG8547 FBgn0033919 FBtr0087566,FBtr0087567 1 2 2 244 2R 10149672 10149993 AGTCATTCGGAACTACCAC 58 10149387 10149405 CTCGTACTCGTACATTCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG8485 FBgn0033915 FBtr0087572,FBtr0087570,FBtr0087571,FBtr0087569 2 4 4 91 2R 10126046 10126142 GTTCACAGGGATCTAAAGC 57 10125973 10125992 AAGAACTTGTTGCTAAACCC 58 NA Drosophila melanogaster 50 CG18568 FBgn0033888 FBtr0087608 2 1 1 62 2R 9859556 9859574 TAAGCTAATCCTTGGCGAG 59 9859512 9859530 TCTATTTGATCGACCAGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10814 FBgn0033830 FBtr0087720 3 1 1 76 2R 9264909 9264927 TATAGAGTGGTCCGATGGA 58 9264851 9264869 GATTCGCGTATGAGAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30053 FBgn0050053 FBtr0087873 2 1 1 60 2R 8576851 8576872 GTGATTATAACAGACACTGGAC 58 8576812 8576832 TCTCTATTTGCTCTAGGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Iswi FBgn0011604 FBtr0087842,FBtr0087841,FBtr0087843 3 3 3 93 2R 8527487 8527566 GGCTATAAGAGCTTCTCCG 59 8527623 8527641 GGTAATCAACGTGTTGCAG 59 NA Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930 1 5 6 105 2R 8335509 8335527 ATCATAACCTCAACAAGCG 57 8335595 8335676 GAGTTATCACTTGTGTACGC 58 NA Drosophila melanogaster 50 CG13167 FBgn0033706 FBtr0088000 1 1 1 60 2R 8145270 8145289 CTATACGAAGGCACTCAAGG 59 8145312 8145330 CATTCGCACTTGGTATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13168 FBgn0033705 FBtr0087998,FBtr0087999 2 2 2 97 2R 8142680 8142698 ATGACCAAGAAGCATCTGG 59 8142808 8142829 CTGGTATCGTACTTCTTAAGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG34227 FBgn0085256 FBtr0112420 3 1 1 119 2R 7135646 7135664 TCTGTCGAGTCTGTATCAG 57 7135747 7135765 TTTCAGAATCATCCAAGGC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 dgo FBgn0086898 FBtr0088250,FBtr0088249 3 2 2 174 2R 6705992 6706068 GATGTCCGGAATAATTATGGAG 58 6705839 6705857 GAATCCTTGTCAGCTTCCT 59 NA Drosophila melanogaster 50 dgo FBgn0086898 FBtr0088250,FBtr0088249 1 2 2 104 2R 6705992 6706068 GATGTCCGGAATAATTATGGAG 58 6705909 6705927 TTTATTCGGATCGCAAAGG 58 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 1 26 26 80 2R 6421013 6421095 AGTCCCTACTTTGCTACCT 59 6420951 6420970 CTCTTGGTACTTGACATCCT 58 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 3 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421093 TAGTAAGGTAGCAAAGTAGGGA 59 NA Drosophila melanogaster 50 CG12909 FBgn0033507 FBtr0088348 3 1 1 66 2R 6198385 6198404 ACTAAGATCGTTACCAAGCA 58 6198433 6198451 TCTTGAGCAGCTTCTTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Not1 FBgn0085436 FBtr0112673 3 1 3 111 2R 5457801 5457820 GGAAACTTTAACTCGAGCAG 58 5457646 5457727 CATCTGTATCGCATGAGTG 58 NA Drosophila melanogaster 50 CG13953 FBgn0033416 FBtr0088510 2 1 1 60 2R 5346217 5346236 CAGATCTTCAGTCATCTGCA 59 5346257 5346277 AGGCGTCATACTTACTAACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdk FBgn0017558 FBtr0112892,FBtr0088508 1 2 2 82 2R 5320552 5320638 GCAATCATCTATCTAAAGGCTC 58 5320679 5320699 CGATAGAACTTTGAGCTTGTC 59 NA Drosophila melanogaster 50 ltd FBgn0002567 FBtr0089930,FBtr0089932,FBtr0089933,FBtr0089931,FBtr0089934 2 5 5 110 2R 5066194 5066212 ATGGATGAGTATGTGAGGG 58 5066041 5066123 GATGAGTATCTTATTCACGAGG 57 NA Drosophila melanogaster 50 CG8046 FBgn0033388 FBtr0088621,FBtr0088620 1 2 2 80 2R 5051521 5051597 GATCTTACAGGATGATTGCC 58 5051460 5051478 CGTATGCATAACCAGAACC 58 NA Drosophila melanogaster 50 Su(var)2-10 FBgn0003612 FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578 1 9 9 80 2R 5005945 5006020 TCATAGATGGCTACTTCCAG 58 5006060 5006081 CATCCTGATGAAGTTGAATCTC 58 NA Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 3 9 9 95 2R 4568140 4568158 ATGAGCAGATCAAGACCTG 59 4568217 4568298 TATCACGGTAGTCCATGAC 58 NA Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 1 9 9 90 2R 4568146 4568164 AGATCAAGACCTGCTTGTG 59 4568217 4568299 ATATCACGGTAGTCCATGAC 58 NA Drosophila melanogaster 50 mXr FBgn0050361 FBtr0088755,FBtr0088754 2 2 3 117 2R 4373797 4374330 GAATCAAGGCTTTCGAGGA 59 4373698 4373717 ATATTGTCGTAGGCGATGTC 59 NA Drosophila melanogaster 50 CG2291 FBgn0033279 FBtr0088802 2 1 1 60 2R 4148559 4148578 TGAAGAAGATCGACGAAGTC 59 4148518 4148536 TGATGGTACTCTGGATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30372 FBgn0050372 FBtr0100140 3 1 1 81 2R 4006468 4006486 GACATTAAGACCAAGACGG 57 4006343 4006423 CGTCCTTAAAGTAGTTGCT 57 NA Drosophila melanogaster 50 CG11198 FBgn0033246 FBtr0088871,FBtr0113053,FBtr0088872 3 3 4 199 2R 3872618 3872636 AGCGAAACAAATGAGTCCA 59 3870501 3872392 GACATACTCGGCCTTAACC 59 NA Drosophila melanogaster 50 CG8728 FBgn0033235 FBtr0088882 1 1 1 81 2R 3825204 3825278 GGATTAGTAAAGGAACAATGCG 59 3825144 3825164 CAAATCCGAGAATTACATGGG 59 NA Drosophila melanogaster 50 CanB2 FBgn0015614 FBtr0088930 3 1 1 290 2R 3674032 3674744 ATGTGTTCCAATTTCGACG 58 3674998 3675016 AATGTAACCATCGTTGTCC 57 NA DesignRelaxed Drosophila melanogaster 50 CG2064 FBgn0033205 FBtr0088923 3 1 1 105 2R 3554127 3554201 GTACTGAAGAACTCGGCTC 59 3554270 3554288 CATCATACGACTTCTCGCT 59 NA Drosophila melanogaster 50 so FBgn0003460 FBtr0088970 2 1 1 93 2R 3312437 3312455 AATACAAGGAGCTGTACCG 59 3312512 3312667 ACATAATGCGCTTTCAACC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111088 3 1 60 157 2R 3249225 3249243 AAGGACGATTGGTCATCAC 59 3236468 3242803 GAACTTGTACCATCTGAATGC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111097 2 1 60 90 2R 3233833 3233851 GACATGCTGGGAACTACTC 59 3219873 3233780 CATCTGGGAGGTACATTGAC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111075 3 1 60 80 2R 3245346 3245364 CTGCAAGTGAAGTTAGCAG 58 3236471 3245305 CTTGTACCATCTAACAATTGGC 59 NA Drosophila melanogaster 50 Tsp42Ej FBgn0033132 FBtr0089030 2 1 1 81 2R 2929211 2929230 GGTGTCGTACAAGTATTCCA 59 2929328 2929346 GAAGGTGAAGAGGTAGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 Tsp42Ee FBgn0029506 FBtr0086180 1 1 1 80 2R 2905067 2905086 TCGAATTAATGACCACTGGA 58 2905129 2905210 AGATAAAGCCGATCAGCTC 59 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086202,FBtr0086199 1 2 11 87 2R 2763927 2764040 AATTCACAGGACTCAACCG 59 2763858 2763877 CGAGTAACATTGTGGATTGG 58 NA InUTR Drosophila melanogaster 50 CG14464 FBgn0033000 FBtr0111283 1 1 2 67 2R 716971 716989 AATATTCGCTCAAACGGTC 58 717073 717091 TTATACCAGCAACCATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nipped-B FBgn0026401 FBtr0111119,FBtr0111118 1 2 2 80 2R 609820 614138 TTTGACTCAGAGGATGTAGAC 58 609760 609778 CTTGGCAACATCAGTACTC 58 NA Drosophila melanogaster 50 CG41120 FBgn0069931 FBtr0111231 3 1 1 73 2L 22667743 22667761 ATGTTAGGAATTGCTGGTG 57 22667688 22667706 CGTAAGGCATTAATACCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3262 FBgn0032986 FBtr0085953,FBtr0085954 3 2 2 60 2L 22240692 22240711 TTCTCTTCCGTTAGACTCAC 58 22240733 22240752 TATTACAACAGGCACTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41434 FBgn0084001 FBtr0111262 2 1 1 60 2L 22038813 22038833 ATACCCTTACGTACTACTGGA 59 22038855 22038873 ATTCTTCTCTTGCGATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His2A:CG33862 FBgn0053862 FBtr0091866 1 1 1 60 2L 21533465 21533484 GAATTATTCCGCGTCATCTG 59 21533507 21533525 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33816 FBgn0053816 FBtr0091820 1 1 1 60 2L 21456565 21456584 GGTCAATGGAAAGCTTATCC 58 21456607 21456625 CGACAGTTTGAAAGATCCA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9259 FBgn0032913 FBtr0081464 2 1 1 60 2L 21090654 21090673 TGGTTATTCTACCACCTCAC 58 21090696 21090714 TCGTTAAAGCCATCCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10947 FBgn0032857 FBtr0081368,FBtr0081369,FBtr0081370 2 3 3 60 2L 20387005 20387024 GAGAACTGGTACAAATACCG 57 20386964 20386982 GGATGTTCACCGAGTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spi FBgn0005672 FBtr0081271,FBtr0081269,FBtr0081268,FBtr0100597 1 4 7 208 2L 19571730 19571748 TACAGAAACGAGAAGAGCC 59 19569195 19569213 CGTAAACGTTGAGTTAGGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Aats-asn FBgn0086443 FBtr0081162 3 1 1 60 2L 19130587 19130605 TGGATCGTGTTCTGAAGTC 59 19130545 19130564 TTGAAGTCAGGGTTAAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Phlpp FBgn0032749 FBtr0081149 2 1 1 80 2L 19061892 19061972 TGTTAGAGCTCATTCTCAGC 59 19062012 19062033 GATCAATATCCATCACTGACCA 59 NA Drosophila melanogaster 50 CG10602 FBgn0032721 FBtr0089314,FBtr0089315,FBtr0089317,FBtr0089316 2 4 4 105 2L 18856840 18856925 CTAAGGGAAGCCTTAACGT 58 18856753 18856772 ATATAAGGATGCTCCTTGCC 59 NA Drosophila melanogaster 50 CG5693 FBgn0040989 FBtr0081026 1 1 1 255 2L 18006796 18006814 TTAATCCGGGCTACATTGG 59 18007033 18007051 CATCTCCAAAGGACTCCTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CadN2 FBgn0032655 FBtr0081012,FBtr0110886 1 2 2 80 2L 17789384 17789403 CACTGCAAATACCAATCAGC 59 17789245 17789343 TCATCACGGGATAGATTATGG 58 NA Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0110935,FBtr0080975,FBtr0110934,FBtr0080976 3 4 6 107 2L 17394484 17400407 CTTATACAGATAACAGCAGCG 58 17400476 17400494 CAATGAAGGCAATCTGTCC 58 NA Drosophila melanogaster 50 Ca-alpha1D FBgn0001991 FBtr0090003 2 1 4 124 2L 16185511 16185529 GGAGAGCTAAGGACATTCG 59 16185614 16189033 GTGCGTAGATCATAGTTAATGG 58 NA Drosophila melanogaster 50 BicC FBgn0000182 FBtr0080805,FBtr0080804,FBtr0080803 1 3 3 156 2L 16045383 16045852 CAATGTTCAGGTCATATTCTCC 58 16046029 16046047 GACATTCACCAGGATTTGG 58 NA Drosophila melanogaster 50 yuri FBgn0045842 FBtr0100611,FBtr0080709,FBtr0100610 3 3 7 109 2L 15261797 15261816 GAAATCTACGACGAATCCTC 57 15258928 15261726 AGTTGTCCGTTAATTTCCAC 58 NA Drosophila melanogaster 50 CG15278 FBgn0032554 FBtr0080683 1 1 1 65 2L 14875760 14875778 TAATTTGGCTCTCCTGGTG 59 14875654 14875672 TTCGACAAGAGAACCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15279 FBgn0028886 FBtr0080686,FBtr0080685 3 2 3 186 2L 14847047 14848681 GATGAAAGGTGTTGGAGCT 59 14846879 14846897 AGACCAATTACTCGCATCG 59 NA Drosophila melanogaster 50 CG33309 FBgn0053309 FBtr0100163 1 1 2 80 2L 14812301 14812320 GAAGTGAACCACTATAGGCA 59 14812362 14813398 ACCTATGTATATTCGCCGAG 58 NA Drosophila melanogaster 50 kuz FBgn0015954 FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660 1 5 5 86 2L 13634172 13634250 ACCTACAGAGATTTCACTGG 58 13634298 13634317 GTACTTCTCGCAAATTCCAC 59 NA Drosophila melanogaster 50 B4 FBgn0023407 FBtr0080514 3 1 2 263 2L 13547145 13547754 CAGACGAAGTGTTAATCGAC 58 13535017 13546919 TCCATGCAGCCTTTAAGAG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 loqs FBgn0032515 FBtr0080498,FBtr0100220 2 2 3 83 2L 13384720 13384740 CAGCACAGTAACAAAGTATCC 58 13384782 13384992 GCAAGTCTTCTGTAACTTAAGC 59 NA InUTR Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090023,FBtr0090026,FBtr0090022,FBtr0090029,FBtr0090025,FBtr0090014,FBtr0090024 2 8 17 185 2L 12724032 12724051 CGTGTTAAGTTGATGAACGA 58 12724334 12724773 TAATGAAACCAGGAACGGT 58 NA Drosophila melanogaster 50 CG18789 FBgn0042127 FBtr0080315 1 1 1 60 2L 11994167 11994186 CCAGTCCTCAGTTTACAGTC 59 11994126 11994145 CTTGAATGCTTCGATTTCCT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6509 FBgn0032363 FBtr0080246,FBtr0080247 1 2 2 80 2L 11511227 11511245 TCAACGGTGTATGATGAGG 59 11510837 11511185 CACATACCTTAGAGTCTCTGC 59 NA Drosophila melanogaster 50 CG6181 FBgn0032340 FBtr0080232,FBtr0080231 1 2 2 80 2L 11100070 11100088 GCAAGTACTACTATCCGGG 58 11099746 11100027 TGTTGTTGACATTAATGGCG 59 NA Drosophila melanogaster 50 Ast-C FBgn0032336 FBtr0080234 1 1 1 66 2L 11076956 11076974 TATTCCAATGGATCGGCTG 59 11076846 11076864 CAAATAGGCGCTGTAACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17085 FBgn0032309 FBtr0080141 3 1 1 176 2L 10851681 10851699 TATTGAGGTTAGTTCGCGG 59 10851839 10851857 AGAATCTGTATATGCCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18284 FBgn0043825 FBtr0080100 3 1 1 93 2L 10645231 10645250 CATCTGCACCAAACTTATCC 58 10645303 10645378 GGATAGTGTCATATTGAAGCTG 58 NA Drosophila melanogaster 50 CG7329 FBgn0032271 FBtr0080131 1 1 1 103 2L 10630166 10630184 TATGCGATTCTACTGGCAG 59 10630023 10630041 GTTTGATATTGCAGCCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4995 FBgn0032219 FBtr0079989,FBtr0079990 2 2 3 240 2L 10322827 10323681 ATGATAAGGATCCCTACCG 57 10323953 10323971 TCTCTTTGCACTATCGTCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG18619 FBgn0032202 FBtr0089738,FBtr0089735,FBtr0089737,FBtr0089736 2 4 4 199 2L 10264620 10264768 GAAAGCCAAACTAGAACGC 59 10264990 10265010 GAAGTAACTGGTCATTGTTGG 59 NA DesignRelaxed Drosophila melanogaster 50 Ror FBgn0010407 FBtr0079978 3 1 1 85 2L 10254249 10254267 ATGGAAAGTTTACGACCGA 58 10254316 10254393 GTAGTATGGCTGCATTCCA 59 NA Drosophila melanogaster 50 CG31714 FBgn0032180 FBtr0113032 2 1 1 135 2L 10068738 10068756 TCATCCTGCTCTTCTTTGC 59 10068341 10068641 TAGAGTAATCCAAATCGCCTG 59 NA Drosophila melanogaster 50 CG4389 FBgn0028479 FBtr0079859,FBtr0079857,FBtr0079858 1 3 3 81 2L 9575428 9575513 GGTAAACTTCGCGTAAATCG 59 9575366 9575384 TCTTCACAAAGTCGGTGTC 59 NA Drosophila melanogaster 50 Eaat1 FBgn0026439 FBtr0079802,FBtr0079801,FBtr0079800 2 3 3 147 2L 9338299 9338321 GAGATCATGTACATATCCTTCCC 59 9338514 9338598 AAGTAATGGCTCTGGTAGC 59 NA Drosophila melanogaster 50 aust FBgn0032104 FBtr0079819 3 1 1 63 2L 9250862 9250880 CTACAAGCAAGAGGTGGAC 59 9250817 9250836 CAGTAGCTGCTTATCAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31886 FBgn0032079 FBtr0113029,FBtr0079787 2 2 2 60 2L 8955036 8955054 CCAGGATGTGCTAATGGAG 59 8954994 8955015 TGGAATATCCTCAGTCAAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9510 FBgn0032076 FBtr0100480,FBtr0100481 3 2 2 83 2L 8940309 8940327 CCTACAGACGATTCAGGTC 59 8940187 8940262 AGATAGTAGGCCCAGTCAG 59 NA Nonspecific Drosophila melanogaster 50 CG9466 FBgn0032068 FBtr0079742 1 1 1 80 2L 8775078 8775160 CTGATCAAGTACGTCAACGA 59 8775017 8775035 GTTCAAGTAGCAAGTGGGT 59 NA Drosophila melanogaster 50 CG13096 FBgn0032050 FBtr0079698 3 1 1 60 2L 8509919 8509937 CGATGTACCTCAAGATCGA 58 8509877 8509896 CACATGCTGACATATAGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 U26 FBgn0027780 FBtr0089673 2 1 2 99 2L 8448497 8448515 TCACTGTTCTGCAGATGAC 59 8448345 8448436 AGCAGTACTCTCAATGAACTG 59 NA Drosophila melanogaster 50 mus201 FBgn0002887 FBtr0005674,FBtr0005673,FBtr0100473 2 3 3 111 2L 8440832 8440850 CAGTGATGAGGAAGTTTCG 58 8440925 8441035 TTTGATAATCTCCTCCGGA 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG7224 FBgn0031971 FBtr0079532,FBtr0100151 3 2 2 74 2L 7999252 7999270 GCTATCTATCGACGAGTGG 59 7999308 7999326 TTGGTTCCTTGATCTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7203 FBgn0031942 FBtr0079498 3 1 1 70 2L 7752417 7752436 TGGTAATCACCTGAAATGAC 57 7752366 7752384 GTAAAGATGCGAGCAAGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG31904 FBgn0051904 FBtr0079502,FBtr0079501 2 2 2 107 2L 7735484 7735566 ATTTAAAGGCATTGGCTACG 58 7735396 7735414 GGGTGTATTGAATTCACGG 58 NA Nonspecific Drosophila melanogaster 50 CG13792 FBgn0031927 FBtr0079520 1 1 1 60 2L 7643923 7643944 GAAGACGACCAATATTAAGACC 58 7643884 7643903 CACTAAATTCGATTGGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17378 FBgn0031858 FBtr0079336,FBtr0079337 1 2 2 60 2L 6777584 6777665 CCTATCCAAGGATAAAGCCA 58 6777688 6777706 CGTCTCATGGTACATTCGA 59 NA DesignRelaxed Drosophila melanogaster 50 eya FBgn0000320 FBtr0079334,FBtr0079335 3 2 2 232 2L 6528505 6528585 TATCGTGGAAATGTTGGCA 59 6528291 6528309 TTCTCGATGTTGAAGATGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG9548 FBgn0031822 FBtr0079264 3 1 1 84 2L 6490336 6490355 ATTGTAAATCTAGGCAGCTC 57 6490206 6490292 GGAGAGCAGATTAATAGTTCTG 58 NA InUTR Drosophila melanogaster 50 CG9511 FBgn0031810 FBtr0113025,FBtr0079276 3 2 2 62 2L 6396117 6396135 GTTTGCTATACGACGAGAC 58 6396073 6396091 TGAAGACCTGATACAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ucp4B FBgn0031758 FBtr0079174,FBtr0079173 3 2 2 60 2L 5969913 5969932 CGTTAACACAGTCTTTAGGC 58 5969955 5969973 CTTGGGTCTTTCCTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18266 FBgn0031724 FBtr0079109 1 1 1 60 2L 5598250 5598268 AACTGGATGAAACAGGTGG 59 5598292 5598310 TGTCAAAGCCCTGATTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18269 FBgn0031719 FBtr0079103 1 1 1 60 2L 5552372 5552391 GAATCGTGAACCAAATGGTG 59 5552412 5552432 ATAGTTTCTCAGGTTGCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hel25E FBgn0014189 FBtr0079123,FBtr0079125,FBtr0079124 3 3 3 84 2L 5539760 5539781 TACTTAACGAAGTACAGGATCG 59 5539635 5539717 CGTCCCTCAATGTATGTAGAG 59 NA Drosophila melanogaster 50 CG8885 FBgn0031656 FBtr0079052 2 1 1 60 2L 4968558 4968578 GTTGGGAATTAGTTGATTCGC 59 4968518 4968536 CACTTGCCTAAGAAGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2955 FBgn0031585 FBtr0077468 3 1 1 60 2L 4149435 4149456 TTACGTACGTTTAGAGGAACTG 59 4149476 4149495 CAGCTTATGAAGCATTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3238 FBgn0031540 FBtr0077569 2 1 1 60 2L 3468231 3468250 GTGGATAATAAAGACCGCCT 59 3468190 3468208 TAACTTCAGTGGCACTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34175 FBgn0085204 FBtr0112366 1 1 1 149 2L 3398231 3398249 GATACAGGGTATCAGGAGC 58 3398362 3398380 AGCCTCTTTATTCTCGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9664 FBgn0031515 FBtr0077607,FBtr0077605 1 2 3 88 2L 3292518 3292536 TGAATCGCTCATCACTCAG 59 3292290 3292466 CTATCAAGGCTGTCTCCTC 58 NA Drosophila melanogaster 50 toc FBgn0015600 FBtr0110903,FBtr0077665,FBtr0077663,FBtr0077662,FBtr0077664 2 5 6 91 2L 3071761 3080665 TTCATGTCCAAAGAGCTGG 59 3071688 3071709 AGCAATATAGTCTTCTCTAGCG 59 NA Drosophila melanogaster 50 colt FBgn0019830 FBtr0077734,FBtr0077732,FBtr0077733,FBtr0077731 1 4 4 65 2L 2769055 2769073 CTATACAAGGAGGGTGGAC 58 2769008 2769026 CAAATCCCTGAGCATTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hrs FBgn0031450 FBtr0089751,FBtr0089750 3 2 3 168 2L 2740460 2740524 CAGAAAGATGTCACTCCCA 58 2740656 2740674 TGAACATCTCGCAGTTCTC 59 NA DesignRelaxed Drosophila melanogaster 50 Clp FBgn0015621 FBtr0078011 3 1 1 78 2L 820810 820828 ATCCAATCACCACAGTCAG 59 820870 820888 CTTGTAGCAGGTGATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4297 FBgn0031258 FBtr0078085,FBtr0078086 2 2 2 60 2L 463730 463748 CTATATTACGGGTCCACGA 57 463688 463706 TGACATATGGCGATACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3164 FBgn0025683 FBtr0078153,FBtr0078155,FBtr0100379,FBtr0078154 3 4 4 81 2L 123791 123873 CTATTACGATCCTATCATTCCC 57 123731 123749 TAGGACTTTAGCGAGTACC 57 NA Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 1 7 8 80 2L 119224 119297 TATAATGCAGACTGATGTCCTG 59 119165 119184 TTTCCCAACTTCAAGTTTGC 59 NA Drosophila melanogaster 50 Nhe1 FBgn0026787 FBtr0078161 3 1 1 96 2L 105331 105403 CAACCTATCCACTGTTACC 57 105253 105271 TGCTAATCCCAGATAAGCA 58 NA Drosophila melanogaster 50 CR32658 FBgn0040859 FBtr0073627 1 1 3 197 X 11985522 11985617 GTTGATACTTCTAGCGCCA 59 11985841 11985859 CATCAAGTGTGCGTTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG40485 FBgn0069973 FBtr0111189 2 1 2 107 X 22363682 22363700 AGGAACTCAACATGTACCC 58 22363290 22363611 TAATGCTCGTGACCTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41354 FBgn0083996 FBtr0111186 2 1 1 169 X 22360165 22360183 ACACTTACCCGTTACAGAC 58 22359126 22359144 ACGTTTCTGGGAAATAACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab10 FBgn0015789 FBtr0077337 1 1 1 62 X 20123452 20123471 GACATAACGAACGAGAAGAG 58 20123496 20123584 GTGCTCGTCTATATTCCGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG32533 FBgn0052533 FBtr0074786 2 1 1 62 X 19368797 19370159 TTACGACAAGCTGGATGAC 59 19368753 19368772 CTATCGTCACTTGAATGGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG6659 FBgn0030946 FBtr0074613,FBtr0074612 3 2 2 95 X 18550294 18550365 ATGTTCATGATCTTCGCCA 59 18550217 18550235 CATGATCAGGATCTGGGTG 59 NA Nonspecific Drosophila melanogaster 50 CG32495 FBgn0052495 FBtr0089800,FBtr0089799,FBtr0089801 2 3 3 82 X 17798672 17798835 ATAAGCTGCACAATATGCC 58 17798881 17798899 CTTTGCATAGATGTCCCAC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12992 FBgn0030846 FBtr0074450 2 1 1 109 X 17484393 17484412 TTATAGCAAGAAACAGGGCA 59 17484484 17484577 TCTGTTTCACAGTGTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15239 FBgn0029681 FBtr0070612 3 1 1 260 X 3783463 3783481 CTGTTTCAAGTTTGGACCG 59 3783853 3783871 CTAAAGCCACCGTAATCAG 57 NA DesignNoJunction Drosophila melanogaster 50 Mnt FBgn0023215 FBtr0070579,FBtr0070578 1 2 3 83 X 3593048 3593152 CCAATAGTAATGGAGCGGG 59 3593199 3593217 GGTCATAGCACTCCTTCAG 59 NA Drosophila melanogaster 50 CG14050 FBgn0040392 FBtr0070407 3 1 1 78 X 2219481 2219499 CAATCCGACGAAGAAAGTC 58 2219336 2219439 GTCCTCGGTAATGAAAGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2246 FBgn0039790 FBtr0085677,FBtr0085676,FBtr0085674,FBtr0085678,FBtr0085675,FBtr0085673 1 6 6 80 3R 26421158 26421178 AGACTATTGTGGAGATCAGTG 58 26421037 26421117 TATTGTTGGCATCCTTTGTG 58 NA Drosophila melanogaster 50 Doa FBgn0053553 FBtr0110914 1 1 9 91 3R 24732971 24732989 CTATCACCAAGATCGAGGG 58 24733044 24733434 CATCTGCAGATACTGCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14258 FBgn0039482 FBtr0085103 1 1 1 64 3R 22919429 22919447 AAGTCAAAGGACACGTCTC 59 22919475 22919549 TTCAGCTTCGAAGTATCCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17192 FBgn0039472 FBtr0085153 1 1 1 88 3R 22843901 22843975 ATTAGTAGCGGGTAATGCC 59 22843831 22843849 ACTGAAATGTGCCATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sda FBgn0015541 FBtr0112882,FBtr0085066 1 2 2 80 3R 22769908 22769995 GGAGATTGTCGAATACTATGG 57 22770036 22770055 TCCTTGTTCATGTAGATGGT 58 NA Drosophila melanogaster 50 CG31099 FBgn0051099 FBtr0084856 1 1 1 227 3R 21135648 21135730 CTGCCATTGATTTGTACTACAC 59 21135389 21135407 TCATCATCGTTATGGGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13840 FBgn0039028 FBtr0084315 3 1 1 60 3R 18641086 18641104 TCAAAGAACTCCAGACACC 59 18641044 18641062 CTCGATAGGGACTCTTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4562 FBgn0038740 FBtr0083859,FBtr0113250 2 2 2 90 3R 15695192 15695212 CGGACTGTTTATCGTATTTGC 59 15695061 15695140 TTTGTTCACCCAGTAGGAC 59 NA Drosophila melanogaster 50 Zip3 FBgn0038412 FBtr0083266 3 1 1 106 3R 12133023 12133043 GGTGTTCTTTGAGATACTCTC 57 12133111 12134061 CAATGGAAGTCAACTGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mhcl FBgn0026059 FBtr0083232,FBtr0110973,FBtr0083233,FBtr0110974,FBtr0083229,FBtr0083231 2 6 6 94 3R 11898683 11898767 TTGGAGATGAAGCTTTCCG 59 11898607 11898625 TCGTTGGTCATCTTCTGTG 59 NA Drosophila melanogaster 50 pxb FBgn0053207 FBtr0083162,FBtr0083161 2 2 2 86 3R 11497623 11497641 GATCGAGGAGGTATACCAC 58 11497691 11497709 AGTTCCATCATATCCAGCA 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7987 FBgn0038244 FBtr0082978,FBtr0082979 1 2 2 75 3R 10400292 10400310 GTAATCACAGACGACTGGG 59 10400170 10400188 TAATCCCAGCTATCTGCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Art6 FBgn0038189 FBtr0082878 1 1 1 106 3R 9771029 9771107 GAAATGCTCTGTATATGGAGG 57 9770943 9770961 TAACCAGAGGTTTCCAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14715 FBgn0037930 FBtr0082423 2 1 1 95 3R 7500236 7500254 AGTTCGATAGCAGCTACTC 58 7500313 7500331 ACATACCAAGGATTCCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6719 FBgn0037893 FBtr0082406 3 1 1 248 3R 7235145 7235163 AAATGGTCAATGTGCTTCG 59 7234854 7234936 TAGTTGTGATTTGATCCCTCAG 59 NA DesignRelaxed Drosophila melanogaster 50 pros FBgn0004595 FBtr0089720,FBtr0089719,FBtr0089718 3 3 3 84 3R 7203836 7203854 TCAAGATGTACTTCCCGGA 59 7203900 7217259 TAGAATTCTCGGAAGTTCGAG 59 NA Drosophila melanogaster 50 topi FBgn0037751 FBtr0082135 3 1 1 99 3R 5602326 5602344 TAAATGTCACGCTTAGTCG 57 5602407 5602485 TAGTGAAAGGAGGTACACC 57 NA DesignNoJunction Drosophila melanogaster 50 SpdS FBgn0037723 FBtr0082078 3 1 2 73 3R 5457573 5458113 AAACCGAAACCTATGGACG 59 5458150 5458168 GTACGAGAACTCATCCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mkk4 FBgn0024326 FBtr0081892 1 1 1 60 3R 4474724 4474742 TTGACATCCTATAACGGCA 58 4474617 4474701 GGCAAGTATTGACAAAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 mRpS18A FBgn0051450 FBtr0081897 3 1 1 75 3R 4388175 4388193 GAAGTACCATTGCTCAGGT 59 4388022 4388137 TCCTGCTTCTCATGAATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31473 FBgn0051473 FBtr0081749 2 1 1 61 3R 3638322 3638555 GGGTACAAGAGTTGGTCAC 59 3638578 3638598 CATCACACGAATCATAAACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sunz FBgn0037462 FBtr0081681 1 1 1 173 3R 2456320 2456393 GGTTTATACAAGCGGTGGT 59 2456588 2456606 TCTTCAAACGCTATCACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33324 FBgn0053324 FBtr0081727 2 1 1 167 3R 2272025 2272184 TTATCGCCAGTGTATCACG 59 2272315 2272333 CGTGTTGCAACTAATCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi15 FBgn0037424 FBtr0078607 3 1 1 207 3R 2128612 2128630 AAGTTCATCTCGCTGAAGG 59 2128859 2128877 CATAGTGGTTGTAGGCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10999 FBgn0037381 FBtr0078634 1 1 3 100 3R 1640975 1640993 TATGAAGACCTCAAGGCTG 58 1643289 1643307 TTGACTTCGTGCTCATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 tacc FBgn0026620 FBtr0089955,FBtr0089951,FBtr0089953,FBtr0089949,FBtr0089952,FBtr0089954,FBtr0089950 2 7 7 126 3R 563223 563241 ATACAGCCAAGAAATGGGA 58 562960 563039 TCCTCCGTATTAGTGTTGG 58 NA Drosophila melanogaster 50 CG12971 FBgn0037078 FBtr0078402 3 1 1 223 3L 21349267 21349285 TCTGTTCCAACATCAGACG 59 21348877 21348895 CATTTGGACGCATGTACTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG12972 FBgn0037076 FBtr0078403 2 1 1 75 3L 21339163 21339794 AAAGGGATCAAATCCCGTC 59 21339106 21339124 CATAGTAACGGATTACGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr78Ca FBgn0037067 FBtr0078409 2 1 1 97 3L 21285668 21285751 AGATTGTGGTATTCCTGGT 57 21285589 21285608 CGTATTCCGGTAGTAGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4858 FBgn0037011 FBtr0078210 1 1 1 101 3L 20520371 20520701 ATATGAGTGGGTTCGTGTG 59 20520766 20520784 CTAGATGTGGTACTTGGGC 59 NA Drosophila melanogaster 50 CG14077 FBgn0036830 FBtr0075072 1 1 1 80 3L 18906645 18906663 AAACCTCTAACAGCGATCC 59 18906532 18906602 GTGTTGTGCAACAATTTGTG 59 NA Nonspecific Drosophila melanogaster 50 CG18233 FBgn0036795 FBtr0075103 3 1 1 180 3L 18600086 18600165 TATGCTGGAGAAGTCTCAC 58 18600307 18600327 CATAATACTCACTCCATCGTG 58 NA DesignNoJunction Drosophila melanogaster 50 comm FBgn0010105 FBtr0075579 2 1 1 119 3L 15720882 15720900 TTATCTGTGGATCGGAGTG 58 15716356 15720799 GCACGTATGTCCTTATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12355 FBgn0040805 FBtr0075606 3 1 2 286 3L 15486664 15487043 CAACGTACAAATGGTTAGATCG 59 15486261 15486282 CCAAATCAATCCACAAATACCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG5883 FBgn0036225 FBtr0076067 1 1 1 76 3L 11937810 11937896 GGACTTCCTAGTTCTTTGGT 58 11937753 11937771 AAGTAACGCGTTTGAATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha16-2 FBgn0028668 FBtr0076091 2 1 1 61 3L 11468304 11468322 CTACGGATTGGTGGTATCC 59 11468345 11468365 CTTCCATCGTATAATCATCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6185 FBgn0036150 FBtr0076185 2 1 1 86 3L 11227336 11227354 ATCTACTGCATCCTCTTGG 58 11227206 11227286 TGTGTCTATAGTGACCCTG 57 NA Drosophila melanogaster 50 CG8003 FBgn0036096 FBtr0076260 2 1 1 139 3L 10655708 10655786 GATGAGGTGGATTACGGAC 59 10655889 10655907 TCTTCTTGTGCATGAACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG34001 FBgn0054001 FBtr0100056 3 1 1 71 3L 10627293 10627382 CAACCTATTCTCATCATTGGAC 58 10627414 10627432 CACCGCAAATGGTTTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8072 FBgn0036070 FBtr0076295 3 1 1 64 3L 10145188 10145255 TGATGTTCGATGAGAGCTG 59 10145283 10145301 ATACTCACGGAAATAGGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6707 FBgn0036058 FBtr0076356,FBtr0076358,FBtr0076357 3 3 3 108 3L 9888975 9889074 CATACTCGATTGCTTCGGA 59 9888885 9888906 ACTTTAAGGCGGAAATAGTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3434 FBgn0036000 FBtr0076473 2 1 1 63 3L 9452679 9452757 TGGTTCACAACCTTTATCAC 58 9452635 9452653 TCTTTAGCCACACTCTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PGRP-LC FBgn0035976 FBtr0089491 1 1 3 197 3L 9338224 9340757 GATCTGGACAACATTGGTG 58 9340918 9340936 TATATCGTAGGTCTGCAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17744 FBgn0035730 FBtr0076932 3 1 1 62 3L 7019639 7019657 CTGGTGGCCAGATTATGAG 59 7019527 7019616 AGACCATTCATATCTGTGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sse FBgn0035627 FBtr0077125 1 1 1 117 3L 5653530 5653605 TTGCTTTGTATACGCAGGT 59 5653431 5653449 CAACATGCGTGTAGAATCG 59 NA Drosophila melanogaster 50 CG34057 FBgn0054057 FBtr0100835 2 1 2 256 3L 897725 897743 CATACTCTGCCTAGTGCTC 59 897962 898036 TATAAGTGTCATCATCGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 5SrRNA:CR33382 FBgn0053382 FBtr0086374 1 1 1 62 2R 15643003 15643021 AATACATCGGTTCTCGTCC 59 15642959 15642977 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13590 FBgn0035012 FBtr0072353 3 1 1 133 2R 20381070 20381088 ATCTGGTACATGATCCGGA 59 20380903 20380923 TCGACCATTAGTAGATAGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG4329 FBgn0034745 FBtr0071940 2 1 2 87 2R 18499319 18499386 GATCATCATGACTGCCTCC 59 18499250 18499268 CACCTGAAATTTGCGAACC 59 NA DesignNoJunction Drosophila melanogaster 50 LBR FBgn0034657 FBtr0071713,FBtr0071711,FBtr0071712 3 3 3 98 2R 17608823 17609371 GGTTTCCGAGGTATCATCG 59 17609432 17609451 TTAAATGCTTTGTTCGGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mago FBgn0002736 FBtr0071569 2 1 1 155 2R 17016322 17016340 AAGAACGACACCATGATCC 59 17016459 17016535 GATGACGATCTCCAGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 exu FBgn0000615 FBtr0086243,FBtr0086242,FBtr0086244 1 3 3 92 2R 16557555 16557573 AATCTGAATCCAGCTGCTC 59 16557398 16557502 GATCTTATAAGTCTGCATCGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14502 FBgn0034321 FBtr0086756,FBtr0086757 2 2 2 62 2R 14181611 14181629 GAGAATATGCCCTTTCTGG 57 14181652 14181767 CAACCATGGTATTATCTTCTGG 58 NA DesignNoJunction Drosophila melanogaster 50 sub FBgn0003545 FBtr0086881 2 1 1 66 2R 13633611 13633688 TTTATGCTTTCCTCTCAACG 58 13633564 13633585 CCTCTATCTCATCTTTGAGGTC 59 NA DesignNoJunction Drosophila melanogaster 50 JhI-26 FBgn0028424 FBtr0087139 3 1 1 71 2R 12178241 12178435 TTCCGGATTTCCTAAGTCG 59 12178469 12178488 ATATGGATAAGCTGTACGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11808 FBgn0034000 FBtr0087366 1 1 1 69 2R 11104371 11104452 ATTCCATCCGAACTTCCTG 59 11104485 11104503 GTAATTGTACAGCTTGCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HPS FBgn0033973 FBtr0087449 3 1 1 60 2R 10744011 10744029 CCGATGACCTAGAGAACTG 58 10744053 10744071 ATCTTGCGAAGATTCTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8503 FBgn0033917 FBtr0087536 2 1 1 201 2R 10131885 10131903 GGTCAGAAGGTTAATGTGC 58 10132068 10132348 ACTTTGGAATAAACTGCCC 57 NA DesignNoJunction Drosophila melanogaster 50 Cp1 FBgn0013770 FBtr0087592,FBtr0087591,FBtr0087593 1 3 3 166 2R 9849825 9854261 AATGGCATACGTTCAAGCT 59 9854391 9854409 ATCGGCGTACTTATTGACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33012 FBgn0053012 FBtr0087909,FBtr0087910 1 2 2 80 2R 8258085 8258176 TTTCGAAATGACGAAGGAC 58 8258219 8258238 AGATGACTCATATAGTGCCC 58 NA Drosophila melanogaster 50 pds5 FBgn0033676 FBtr0087974 1 1 1 94 2R 7916599 7916680 GATTGTCAATGACCAGCAC 59 7916738 7916756 ATTCCACCGACAGATTGTC 59 NA Drosophila melanogaster 50 CG13211 FBgn0033613 FBtr0088173 1 1 2 222 2R 7182562 7182580 GTTCTCCAAGGATCTCGTC 59 7182286 7182376 GAGAGCGAATATGGAGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pkn FBgn0020621 FBtr0112897,FBtr0088603,FBtr0088605,FBtr0088602,FBtr0088604,FBtr0088601 2 6 6 101 2R 5141852 5141871 CGGAGGATGTTAAGAAACAG 58 5141703 5141788 CCAAGTGGTTAATTGTCGG 58 NA Drosophila melanogaster 50 CG2915 FBgn0033241 FBtr0088879,FBtr0088878 1 2 2 81 2R 3846909 3846927 TTATCCATTCTGGTAGCGG 58 3846787 3846864 TCAACACTCTATGCTTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12164 FBgn0033158 FBtr0088963 3 1 1 111 2R 3199604 3199686 GAAGGAAGTCAAGGTTCCC 59 3199761 3199779 CACCTTAACCTCCTTCCAG 59 NA Nonspecific Drosophila melanogaster 50 CG15236 FBgn0033108 FBtr0086160,FBtr0086161 2 2 2 229 2R 2722213 2722231 CCATCTAGTAACAGCTCGG 59 2722424 2723008 ATCTGTCCAAGATCTGTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG7861 FBgn0033055 FBtr0085974 3 1 2 118 2R 1931430 1931448 ATGGAGAATGGTATCGAGG 58 1931530 1931605 TCAGCCTCATTCCAAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11665 FBgn0033028 FBtr0086072 2 1 1 100 2R 1531219 1531335 TTATAGTTCATTGGGCCCG 59 1531137 1531155 GTATCATACCCAGTGACGC 59 NA Drosophila melanogaster 50 CG41448 FBgn0084012 FBtr0111271 2 1 1 61 2R 562478 562689 ATTGAGAAAGAGGAACCGT 58 562435 562453 CTTGTAAACCTCACGTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lar FBgn0000464 FBtr0081260,FBtr0112800 3 2 2 81 2L 19729578 19729598 CGCTATCAGTATTATGTCGTG 58 19729639 19729729 CATCCGTGACCTTAAATTCAC 59 NA Drosophila melanogaster 50 Ddc FBgn0000422 FBtr0081167,FBtr0081166 3 2 3 170 2L 19118128 19119174 TGGAGAATATACGCGAAAGG 59 19117977 19117995 CATGAAACTTGGGACTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33648 FBgn0053648 FBtr0091625 1 1 1 174 2L 14524982 14525054 CGTAAGTATAGTTGAGTTCACC 58 14525251 14525269 ATATCGCTTGTATAGGGCA 57 NA DesignNoJunction Drosophila melanogaster 50 CG16852 FBgn0028942 FBtr0080507 1 1 1 84 2L 13540994 13541013 CCCAAAGAGTGAATATGGAC 57 13541059 13541139 CACGATTTGATCTTCTTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6153 FBgn0032445 FBtr0080394 2 1 1 61 2L 12693651 12693733 ATATAGGTCTTCGAGGAGAG 57 12693756 12693775 GTAGTTGCATATGGTTACGC 59 NA DesignNoJunction Drosophila melanogaster 50 sala FBgn0003313 FBtr0080237 1 1 1 85 2L 11486211 11486300 TGAAACTACTGATTGCTCTG 57 11486348 11486366 TCCATATCCTCCTTGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5337 FBgn0032249 FBtr0080043 3 1 1 91 2L 10433910 10433929 ATAATCCCAATACCGAGGTC 58 10433764 10433856 GAGATCACTCATACCCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SmB FBgn0010083 FBtr0080045 1 1 1 61 2L 10426017 10426035 CAAAGCCTTCGACAAACAC 59 10425974 10425992 GAATCTTCCGGAACTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13102 FBgn0032088 FBtr0079766 2 1 1 81 2L 9012551 9012636 GTACAACTGGAATAACGATGTG 59 9012678 9012696 CTTAAGTGCTAAGCTGCAG 58 NA Drosophila melanogaster 50 CG7277 FBgn0031713 FBtr0079128 1 1 1 60 2L 5531845 5531863 ATACCAGAATCGCGTATCC 59 5531803 5531821 ATCAATGGACTTGAACAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31955 FBgn0051955 FBtr0077540 3 1 1 63 2L 3712541 3712559 ATGAATACAGTGAGCCCAG 59 3712444 3712514 ATATTGTAGGCCTCCTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 msl-2 FBgn0005616 FBtr0077571,FBtr0077570 2 2 2 204 2L 3463883 3463901 ATTTCGAAATGCCGAAGGA 59 3463645 3463716 ATATTGAAGCCCTGGTACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5800 FBgn0030855 FBtr0074453 2 1 1 60 X 17532509 17532528 GAGGCATTAATCTAGTGCTG 58 17532550 17532569 TGCTTGTCATATTGATCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dsp1 FBgn0011764 FBtr0089259,FBtr0089261,FBtr0089260 3 3 5 242 X 16228438 16230333 CAAATACAGCAATTGGCTG 57 16230539 16230557 ATAATCATAGCCCGTGGTG 59 NA DesignRelaxed Drosophila melanogaster 50 rho-4 FBgn0030318 FBtr0073518,FBtr0073517,FBtr0073519 2 3 3 82 X 11498696 11498777 ATACATTTCCAGGACGATCC 59 11498822 11498840 TTGTAGATGAACAGGGTGG 58 NA Drosophila melanogaster 50 CG2186 FBgn0030243 FBtr0073381 3 1 1 233 X 10752388 10752406 GATGAGTTGCTACTCTCGG 59 10752668 10752686 AGATGAAGCTAGCTCTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG2875 FBgn0029672 FBtr0070586,FBtr0070587 1 2 2 66 X 3466638 3466656 CTTTCTCATGGACTCCCTC 59 3466528 3466546 AAAGATTCCCTGAAGAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 trol FBgn0001402 FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964 1 4 7 80 X 2386428 2386446 TAGTAATGATCGCAGACCG 58 2384863 2386384 CCAACGTCGTTATTCTCCT 59 NA Drosophila melanogaster 50 CG5254 FBgn0040383 FBtr0070134 2 1 1 60 X 652499 652517 CCAAGATTATGCGTTTGGG 59 652541 652559 TAGGAGTACTCGAAGACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vnd FBgn0003986 FBtr0070110,FBtr0110929 2 2 2 85 X 488326 490393 GAACGAGCTATACGGTACC 59 490441 490460 AACCAATGTAGGTGTACGAC 59 NA Drosophila melanogaster 50 CaMKI FBgn0016126 FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065 3 6 7 103 4 467819 467838 GAAAGGAAGAATCTCTGGAG 57 470592 470883 ATTTGGATGAGTTAACCGC 58 NA Drosophila melanogaster 50 CG2246 FBgn0039790 FBtr0085677,FBtr0085676,FBtr0085674,FBtr0085678,FBtr0085675,FBtr0085673 3 6 6 82 3R 26421160 26421180 GGAGACTATTGTGGAGATCAG 59 26421037 26421117 TATTGTTGGCATCCTTTGTG 58 NA Drosophila melanogaster 50 CG33204 FBgn0053204 FBtr0089470 3 1 1 108 3R 24741129 24742159 TAGACGATCGAAGAGATCTG 58 24742230 24742248 GAGTATTTGTTCTCCAGCC 57 NA Nonspecific Drosophila melanogaster 50 CG11790 FBgn0039265 FBtr0084760,FBtr0084761 3 2 2 90 3R 20874455 20874473 CTGAGAAGGGATATACCCA 57 20875008 20875026 AAATAACTTTGCAGTGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 slo FBgn0003429 FBtr0084683,FBtr0100635,FBtr0084685 3 3 17 92 3R 20521093 20521111 GGACATTAAGGACGAGACG 59 20521838 20527819 TGGTGTTCATCTAAGTCATCG 59 NA Drosophila melanogaster 50 Oamb FBgn0024944 FBtr0083932,FBtr0083933,FBtr0083934 3 3 3 91 3R 16526375 16526394 TATTGTCAACCTAGCTGTGG 59 16526041 16526324 CGAATATCCAAACCTTGAAGAC 59 NA Drosophila melanogaster 50 CG34308 FBgn0085337 FBtr0112504 2 1 1 61 3R 8915295 8915313 ACCCTCATCACTATCACCA 59 8915338 8915356 CTCCACAAAGGATTTGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14605 FBgn0037486 FBtr0081600,FBtr0081601 2 2 3 99 3R 3044372 3044393 CAACAGGACGATAATAAAGCTG 59 3044111 3044315 CCTTGTTAAAGAAATCAGCAGG 59 NA Drosophila melanogaster 50 CG1126 FBgn0037280 FBtr0078872 3 1 1 90 3R 642602 642683 CGACGTATATCACCTTTATCAG 58 642734 642752 TAGGATAACCAGTTGACCC 57 NA Drosophila melanogaster 50 CG5059 FBgn0037007 FBtr0078218,FBtr0078216,FBtr0078217,FBtr0078219 1 4 4 116 3L 20508982 20509000 TGATGAGCTCAGAAACGTG 59 20508709 20508828 TCAATGTTCCAGCTACTGG 59 NA Drosophila melanogaster 50 CG5976 FBgn0036999 FBtr0078200,FBtr0078199 2 2 2 60 3L 20468718 20468738 TCTATCCGATAAGCTACACCT 59 20468759 20468778 CACAACTCGAGGTATAAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32058 FBgn0052058 FBtr0076293 3 1 1 60 3L 10425786 10425804 GAGGTGTACGACCAAAGAC 59 10425744 10425763 ATTCCACATACGGTAATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32043 FBgn0052043 FBtr0114368,FBtr0076465,FBtr0114367,FBtr0076466 2 4 4 107 3L 9463440 9463458 AAATTCGCTCGATATCTGG 57 9463529 9463669 CTTCGTGTAGATTTCCGTG 58 NA Drosophila melanogaster 50 ERR FBgn0035849 FBtr0076724,FBtr0076725 2 2 2 76 3L 8177588 8177606 GTCTACTAATGGGCATGCT 59 8177474 8177492 ATTCCTTCGGTACTTCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Myo61F FBgn0010246 FBtr0072675,FBtr0072673,FBtr0072672,FBtr0072674 1 4 4 83 3L 1326066 1326084 TCCTCGAGAACTACCAGAG 59 1326127 1326210 CAATGTAGGTATAGATCAGGTCC 59 NA Drosophila melanogaster 50 Dll FBgn0000157 FBtr0072378,FBtr0072379 3 2 2 166 2R 20705136 20705154 ACCTATCAGCATTTCGGAC 59 20705284 20707346 ATGGAGAAGTCATCCTTCG 58 NA Nonspecific Drosophila melanogaster 50 CG3257 FBgn0034978 FBtr0072252 2 1 2 113 2R 20007770 20008246 GCGATTGGGATATCTTAACC 58 20008322 20008340 TCTAGAACATGCTCGTAGG 58 NA Drosophila melanogaster 50 CG3065 FBgn0034946 FBtr0072153,FBtr0072155,FBtr0072154 1 3 3 60 2R 19859012 19859033 CAAGCCGATAAAGATTAAGCTG 59 19859052 19859072 AGATACGATCTGGTACTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6044 FBgn0034725 FBtr0113108,FBtr0071823 3 2 2 60 2R 18295312 18295331 AAGCAGTTTGAGTTCAAGAC 58 18295354 18295372 AACGTAATCACGTAATGCC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG6393 FBgn0034685 FBtr0071752,FBtr0071751,FBtr0071750 2 3 4 81 2R 17956169 17956254 GATAATTGAATTCCCAGCAGTG 59 17956296 17956314 GAAGGGAAGGATGTACTGG 59 NA Drosophila melanogaster 50 CG10764 FBgn0034221 FBtr0086919 2 1 1 93 2R 13341439 13341547 TATGATCTATACGTGAGGTTGG 58 13341601 13341619 CAATGAAGTCATGGTGCAC 59 NA Drosophila melanogaster 50 Dek FBgn0026533 FBtr0100437,FBtr0100438,FBtr0100436 3 3 4 148 2R 12747152 12747173 CGGATATGTCAAAGAGATTCTG 58 12747282 12747364 TCGCAATTAACGCTTTCAC 59 NA Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 1 12 12 88 2R 6499952 6500255 GCATATGGACATGTATAACTCG 58 6500304 6500322 TATAGTGCGGTTCCTTCTG 58 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 1 9 9 149 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349137 6349157 GACAGCATCGAATACAAACTG 59 NA Drosophila melanogaster 50 CG1667 FBgn0033453 FBtr0088479 3 1 1 86 2R 5731845 5731863 GGCTACCTCAAACTTTCAC 58 5731910 5731983 GGTAACATTATTCTTGTCCTCG 58 NA Drosophila melanogaster 50 Vps25 FBgn0022027 FBtr0088694 3 1 1 153 2R 4513455 4513473 CTGTACGAAATAGCCTCCG 59 4513589 4513608 CTTAGAAGAACTTAACGCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111090 2 1 60 180 2R 3249368 3253985 CAGGCACTGAATATGATGGA 59 3238787 3249225 TTAAATCCCACAGGCTCTG 59 NA Drosophila melanogaster 50 Syx5 FBgn0011708 FBtr0080831 3 1 2 115 2L 16308277 16308296 TATTGGCAAGAACATAGCCA 59 16308442 16308460 TGATATAGGTCAGCTCCTG 57 NA DesignNoJunction Drosophila melanogaster 50 yuri FBgn0045842 FBtr0080711,FBtr0100613,FBtr0080712 3 3 7 107 2L 15261795 15261813 ATCTACGACGAATCCTCGA 59 15261626 15261725 CGTATCGCATTCAATTTCCA 58 NA Nonspecific Drosophila melanogaster 50 rk FBgn0003255 FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610 3 4 5 90 2L 13991706 13992947 GTGGTCGTCCTAGATTTGG 59 13991051 13991652 ACAAAGTTAGCTCCTCCAG 58 NA Drosophila melanogaster 50 nrv2 FBgn0015777 FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382 1 5 5 84 2L 6791573 6791591 TTTGATCTGGTACAAGGGC 59 6791313 6791525 TACTTTGTACACCGCAAGG 59 NA Drosophila melanogaster 50 tutl FBgn0010473 FBtr0089268 2 1 4 90 2L 4304833 4305358 GTAATCATGGATAAGGCGG 57 4305412 4305430 GACTTACACGTATGGTCAG 57 NA Drosophila melanogaster 50 drm FBgn0024244 FBtr0077531,FBtr0077530 2 2 2 78 2L 3545739 3545757 TGAGATCACCTATTCGTGC 59 3545799 3546740 CTGACTACATCTGTGCTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3542 FBgn0031492 FBtr0077648,FBtr0077649 3 2 2 80 2L 3024052 3024070 CACGTTAGCGGCTATAGAG 59 3024169 3024188 TTATCCTTAAACACCACAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG14515 FBgn0039648 FBtr0085389 2 1 1 231 3R 25023559 25023578 GATATCGGTGGTCATCTACC 59 25023772 25024807 CGTGAAGTAGACTTGTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13613 FBgn0039193 FBtr0113278 3 1 1 118 3R 20191762 20191916 ATAACCTTCCTGCTCACAC 59 20191997 20192016 GATAGATGACACTGACCACC 59 NA DesignNoJunction Drosophila melanogaster 50 AP-1sigma FBgn0039132 FBtr0084496 2 1 1 98 3R 19785069 19785087 ATTCATCGCTATGTGGAGC 59 19785214 19785234 CTCATCCAGGATAAAGTATGC 57 NA DesignNoJunction Drosophila melanogaster 50 Aats-glupro FBgn0005674 FBtr0084512,FBtr0084511 3 2 2 209 3R 19779100 19779186 TCAGTGGAATAACGTTGTCC 59 19778910 19778928 TTCTCCTTCTCAGTCTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 Aats-glupro FBgn0005674 FBtr0084512,FBtr0084511 1 2 2 207 3R 19779099 19779184 AGTGGAATAACGTTGTCCG 59 19778910 19778928 TTCTCCTTCTCAGTCTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6026 FBgn0038676 FBtr0083715 3 1 1 60 3R 14868838 14868860 GAATACCAGAATACTCCCTTCTC 59 14868880 14868898 TCTTGAGAATGGGTTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9611 FBgn0028487 FBtr0112937,FBtr0082846,FBtr0112939,FBtr0082847,FBtr0112938 2 5 5 84 3R 9521483 9521502 TTTGAGCACATTGGATTTGC 59 9521355 9521439 CTCCAAGTGAGTTATGTTTGTC 59 NA Drosophila melanogaster 50 CG4089 FBgn0037838 FBtr0082281 2 1 1 298 3R 6642323 6642341 AGCAAGTTCTATACAGCGT 58 6642659 6642735 GAATCTCATTGGATCGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG34360 FBgn0085389 FBtr0114581,FBtr0112576,FBtr0114582 3 3 5 236 3R 5701938 5756097 GAAATGAGGAACCCATTGAG 58 5769231 5769249 GATAGTTGCCGTAGTCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10359 FBgn0035452 FBtr0114608,FBtr0073136 1 2 2 108 3L 3613110 3613128 CTACAAGGAGCTGATGACC 59 3613197 3613761 CAGCTGATCCAATTTCTTATCG 59 NA Drosophila melanogaster 50 CG30429 FBgn0050429 FBtr0072450 3 1 1 149 2R 21134524 21134600 TTTACGCTAATGGAAACCG 58 21134713 21134731 TTGGTTCATCCTGTACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3419 FBgn0035002 FBtr0072291 1 1 2 73 2R 20301533 20301551 GTCCATCAACTAGGACTGG 59 20301588 20302324 TAGGCAAGTGACACATACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG8441 FBgn0034086 FBtr0087247 3 1 1 181 2R 12073249 12073328 ATGAAGAATCCGGATAAGCC 59 12073087 12073105 TTCTGGATGTTCTTCTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13392 FBgn0032033 FBtr0079720 3 1 1 189 2L 8382517 8382600 AATAGGCGAAGTATGGTCG 59 8382346 8382364 AATAAAGAACTTGTGCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31948 FBgn0051948 FBtr0077788 1 1 2 103 2L 2416370 2416444 TTGTGCAAGTCGTATCCAG 59 2416285 2416303 GAACTTCATTGGGCAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:Y1:85Ab FBgn0012025 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Or-CD11c FBgn0086070 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:SeC FBgn0011987 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me18S-A934 FBgn0086036 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Ory FBgn0046323 FBtr0113893 3 1 1 62 YHet 233542 233562 TGCTATCTCATATGCCTACTG 58 233586 271130 GGTTTATACGCTGTTGCAC 59 NA DesignRelaxed Drosophila melanogaster 50 snoRNA:Psi28S-2876 FBgn0086671 FBtr0091623 1 1 1 65 X 17038913 17038934 TCTATCTAATATCCGTAGCGTC 58 17038869 17038887 TCTCTTCGTTTCATACGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40500 FBgn0069968 FBtr0111198 3 1 4 68 X 22292809 22292829 CCGTATCGATATCGATATCGT 58 22292859 22306503 CTAGCTCCATTACACTGGG 59 NA DesignRelaxed Drosophila melanogaster 50 fog FBgn0000719 FBtr0077342,FBtr0100538 2 2 2 170 X 22246596 22246614 TTTATGTGGCCAGACTTGG 59 22230963 22230981 ACCATTCTCTGGACATTCC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14581 FBgn0040645 FBtr0077186 1 1 1 60 X 21126432 21126451 CTCCTGATCGATCTGAACTC 59 21126471 21126492 GAATATCGGTTTCGATTGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hydra FBgn0031128 FBtr0077294,FBtr0077295 1 2 2 93 X 20542568 20542708 CCTTAAAGTAGAAGTCGTGGT 59 20542495 20542513 ATGGGTATGATTGGGTTGG 59 NA Drosophila melanogaster 50 CG15618 FBgn0031077 FBtr0074803 3 1 1 95 X 19759184 19759204 GCAAGATCATGAAGATGTAGC 59 19759034 19759127 GAGAAGAGTTTGGTCAGCT 59 NA Drosophila melanogaster 50 Shawn FBgn0031039 FBtr0074738,FBtr0074737,FBtr0074739 3 3 3 116 X 19508311 19508329 TGTTTCCTCTACTGCAACG 59 19508409 19508486 GATGAATGCGTCAATGGTG 59 NA Nonspecific Drosophila melanogaster 50 Tyler FBgn0031038 FBtr0074735,FBtr0074736 2 2 2 116 X 19508311 19508329 TGTTTCCTCTACTGCAACG 59 19508409 19508486 GATGAATGCGTCAATGGTG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG7876 FBgn0031000 FBtr0074673 1 1 1 60 X 19110186 19110205 TGGAACCACTGAGAAATCAG 59 19110225 19110246 AGTATCTGATTTATCCGTGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ulp1 FBgn0027603 FBtr0074693 2 1 1 101 X 19097931 19097952 CTTTCTAAGGAATGACTTTGCG 59 19097792 19097869 TCATTAGCCTGCTGTTCAG 59 NA Drosophila melanogaster 50 Cyp308a1 FBgn0030949 FBtr0074604 2 1 1 63 X 18605174 18605192 AACTTAAGGTGCATTTGGG 58 18605219 18605298 GCGGGATCTAAATGAATGG 58 NA DesignRelaxed Drosophila melanogaster 50 wupA FBgn0004028 FBtr0074522,FBtr0074524,FBtr0074525 2 3 7 81 X 18003548 18003569 GCGTATGTATATTTGTGAAGGC 59 18000950 18003507 ATTGAGATCGTTGATCTCCC 59 NA Drosophila melanogaster 50 RhoGAP16F FBgn0030893 FBtr0074513 3 1 2 80 X 17990421 17990439 AAATCAAGAGTCCGTTGGT 59 17990483 17990563 ACAGATCGGTTAACAACCA 58 NA Drosophila melanogaster 50 CG32554 FBgn0052554 FBtr0074467 3 1 1 69 X 17746235 17746253 TATTTGATCGCCGATTTGG 58 17746184 17746202 TCCGTCTCCTTATGTTAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5004 FBgn0030820 FBtr0074386 2 1 1 113 X 17021830 17021848 ATTCATCTAGAGCAGCGTC 59 17021923 17022040 TAATTTCAACTCCAGTCCCTC 59 NA Drosophila melanogaster 50 if FBgn0001250 FBtr0074357,FBtr0074358 3 2 2 126 X 16649962 16649980 TGAGCCGGTTATTGATCAG 59 16649783 16649872 ATACTTGTCCACAGTGCTG 59 NA Drosophila melanogaster 50 CG4653 FBgn0030776 FBtr0074321 2 1 1 60 X 16598763 16598781 GTTGGCTCTAATGACTTGG 58 16598805 16598823 TATTCGCATTCAGGACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lcch3 FBgn0010240 FBtr0074129,FBtr0074127,FBtr0074128 1 3 3 89 X 15821838 15821859 TGCCGTTAACTATACTTACTGG 59 15821909 15821993 TCACTCTTTCCGATCTTGC 59 NA Drosophila melanogaster 50 CG6340 FBgn0030648 FBtr0074038 1 1 4 69 X 15377389 15377407 AGAAGACAAAGCCGATGTC 59 15377440 15378567 TTTGACTCATCAATGCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9053 FBgn0030606 FBtr0073969,FBtr0073968 2 2 2 61 X 14960196 14960214 CAGAGTGCCTATACCACTC 58 14960153 14960173 GATTACCTGGTACTCAAAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9512 FBgn0030593 FBtr0073979 1 1 1 111 X 14798009 14798027 ATTGGTTCACCTCAGATCC 58 14796896 14796914 GATCCTTGAGGTTCTCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9400 FBgn0030562 FBtr0112982 3 1 2 63 X 14182787 14182808 GCTTCATCGATAGATATCATCC 58 14182591 14182610 ACAAGTAATGTGAAGTGACC 57 NA DesignNoJunction Drosophila melanogaster 50 CG34324 FBgn0085353 FBtr0112526 3 1 1 206 X 13350951 13350970 GACAATCCAGTTGCTATTGC 59 13350764 13350782 ACAGTTGTTGACGGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1640 FBgn0030478 FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769 1 6 6 82 X 13268114 13268132 ATTCAACCGTTAGACGTCC 59 13268315 13268333 ATGTTATCCAGTGTGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 Smr FBgn0024308 FBtr0073707,FBtr0073706,FBtr0073708 2 3 3 86 X 12604887 12604908 CAATTATCTTGGACAGAAGCTG 59 12604744 12604841 TTGGATTCACTAACATCCGA 58 NA Drosophila melanogaster 50 CG11085 FBgn0030408 FBtr0073656 2 1 1 207 X 12514225 12514243 AAACCTGGTACCAGAATCG 59 12514869 12514887 AAATTGCAAGGATTGCTGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Cyp318a1 FBgn0030369 FBtr0073623 1 1 1 87 X 11927455 11927473 ACGAATCTTCATGGACAGG 59 11927521 11927943 TAATGGTCAAACAGGATACCTC 59 NA Drosophila melanogaster 50 regucalcin FBgn0030362 FBtr0073576,FBtr0073578,FBtr0073577,FBtr0073575 1 4 4 99 X 11910742 11910817 AGGTTAATCCCAACACTGG 59 11910880 11910898 TACAGGATGTCCAAGTTGG 58 NA Drosophila melanogaster 50 Hsc70-3 FBgn0001218 FBtr0073608,FBtr0073610,FBtr0073609,FBtr0073611 2 4 4 60 X 11697602 11697620 GATCTATTCCGTTCCACCC 59 11697560 11697578 TGTTCATGTCAGCATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PhKgamma FBgn0011754 FBtr0090001,FBtr0090000 3 2 3 82 X 11592561 11592579 TCTAGTCGTTGATCCTTCG 58 11592624 11594666 CACCCATTAACACCATTTGG 59 NA Drosophila melanogaster 50 Atg8a FBgn0052672 FBtr0071498 3 1 1 62 X 10659672 10659691 TTTGTGAACAACGTCATTCC 59 10659560 10659647 GTGATGTTCCTGGTACAGG 59 NA DesignRelaxed Drosophila melanogaster 50 ras FBgn0003204 FBtr0071494,FBtr0071495 1 2 3 100 X 10639925 10639943 CAGACAAAGAGTACCACCG 59 10640006 10640117 AGAAAGTCGTTGTAGGTGAG 59 NA Drosophila melanogaster 50 CG1889 FBgn0030164 FBtr0071409 2 1 3 164 X 9859800 9859882 GATTGTAGCCTAGACATTGAG 57 9860008 9860026 GTTTCTGACCTTCTGATCG 57 NA Drosophila melanogaster 50 Hex-A FBgn0001186 FBtr0071361,FBtr0071362 2 2 2 60 X 9481077 9481095 GCCATACTCAATGACACCA 59 9481119 9481137 TGCAGTTGTGATTCTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trxr-1 FBgn0020653 FBtr0071168,FBtr0071167,FBtr0071169 3 3 3 61 X 8140427 8140445 ACATCAAGTCCGTCAACTG 59 8140468 8140558 GATGTACTCCACTTTCTTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 GIIIspla2 FBgn0030013 FBtr0071159 2 1 1 107 X 8052053 8052071 TGGAACGTACAACGATCTG 59 8052140 8052160 AAGAGATCATAGCGATTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15327 FBgn0029967 FBtr0071144 3 1 1 92 X 7772696 7773888 TTATCTTGGAACTTGTCACC 57 7772623 7772642 TCGGTGGATATAGATTTCGA 57 NA Drosophila melanogaster 50 CG18155 FBgn0029945 FBtr0071051 1 1 1 66 X 7223511 7223529 GTCTGGGCATTCAGATCTC 59 7223639 7223660 GAGCACAAGTATGTTACATTCG 59 NA DesignNoJunction Drosophila melanogaster 50 inx7 FBgn0027106 FBtr0071035,FBtr0071034 3 2 2 100 X 6886273 6886291 ATTCTGTGGTTCTGGTACG 59 6886121 6886211 CGGGTAAATGTGACATTTCTG 59 NA Drosophila melanogaster 50 CG14442 FBgn0029893 FBtr0070988 1 1 1 60 X 6587150 6587169 GAAAGCTGAACGATTATGCC 59 6587109 6587127 ACAACATGCTTCAGTACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34417 FBgn0085446 FBtr0112705,FBtr0112704 3 2 5 86 X 6481126 6482107 CAGGAATATGAGAACGTCCA 59 6482155 6482174 CAAGAAATGGTGTATCAGCG 59 NA Drosophila melanogaster 50 CG33669 FBgn0053669 FBtr0091648 1 1 1 60 X 6293623 6293641 ATTGAAGACGATGTCGAGG 59 6293581 6293599 TAACTACTGCACCACATCC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 mof FBgn0014340 FBtr0070829 3 1 1 60 X 5768536 5768554 GCAGATCACAATCAAGGAG 58 5768494 5768512 GTAGATAATGTCGTCGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mcm3 FBgn0024332 FBtr0070762 1 1 1 182 X 5219595 5219613 CTATCGCAATCCCAAGGAG 59 5219833 5219851 ATGAACTCCACGGATAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 snf FBgn0003449 FBtr0070748 3 1 1 96 X 5203546 5203565 GTGATCTTCAAGGAGATCGG 59 5203624 5203642 ATTTGGAGTAGGCGATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bi FBgn0000179 FBtr0070672 1 1 1 118 X 4345064 4372194 GTAAGTACTACGATCCTGAACTC 59 4372272 4372290 GTCTCCTTGAAGACGTACG 59 NA Drosophila melanogaster 50 norpA FBgn0004625 FBtr0100671,FBtr0100670 3 2 4 108 X 4247551 4247569 GAACTGGATAAGCGATCCC 59 4247641 4247989 CATCTAGCCAGATCTTGGC 59 NA Drosophila melanogaster 50 CG32776 FBgn0052776 FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630 2 4 4 88 X 3791673 3795151 CCTGAGTCTCGATGATGAC 59 3791603 3791623 CGGGATGATCAATAATCTCCA 59 NA Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070522,FBtr0070511,FBtr0070514 3 14 14 87 X 3232771 3232789 CTACCAGAGCATGATACCG 59 3232840 3233011 AAGGGTTACTTGAAAGCGT 59 NA Drosophila melanogaster 50 phl FBgn0003079 FBtr0112818,FBtr0111025,FBtr0070401 1 3 3 104 X 2236288 2236306 TTGAAACACAATCGTCCCA 59 2236374 2236460 CTCCGCCAGAATATTCCAG 59 NA Drosophila melanogaster 50 ewg FBgn0005427 FBtr0100577,FBtr0100579,FBtr0089441,FBtr0089442 1 4 8 172 X 165636 166462 ATGTTGATTACACCACGCA 59 165420 165438 AACGGTTTGAATGGTAGCA 59 NA Drosophila melanogaster 50 RhoGAP1A FBgn0025836 FBtr0112920,FBtr0112919 2 2 2 81 X 31080 31099 CCATATTACGCACCATTTCG 59 31143 32455 GCCGAAACTAAGTTCTTGC 59 NA Drosophila melanogaster 50 CR42195 FBgn0085828 FBtr0114286 1 1 1 110 U 4085918 4085936 CTGTTCTGCTTTCATTGGT 58 4085826 4085844 TTAGTCTTAAGACGGTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sphinx FBgn0083990 FBtr0111044,FBtr0111045 3 2 3 60 4 997703 997722 CCACAGGAACTACAATACCA 59 997745 997763 AATCTGTTGTAGATGCAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sv FBgn0005561 FBtr0100344,FBtr0100346,FBtr0100343,FBtr0089327 2 4 7 193 4 1128890 1128908 CGTCTATGCTTTACGACAG 58 1129194 1129748 GTCAAATGCTAGAGCTGTG 58 NA Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 3 8 8 80 4 671648 672941 TAACAGCACAGATTGATGGT 59 671587 671605 TCAAATACGGGTGAAAGCT 59 NA Drosophila melanogaster 50 CG1674 FBgn0039897 FBtr0089118 2 1 4 80 4 259799 259817 ATACTGATCGACAAACCGA 58 259861 260954 CACATTAGCGGATTCTTGG 58 NA Drosophila melanogaster 50 ci FBgn0004859 FBtr0089178 3 1 1 82 4 72690 72708 GAATTCCCGGATACATGGA 58 72564 72645 ACAATTGACATAGGGATCGT 58 NA Drosophila melanogaster 50 RNaseP:RNA FBgn0046696 FBtr0085775 1 1 1 60 3R 27043362 27043381 CAGTTGCAAACTAGCATCTG 59 27043321 27043342 CAATGGTTTGTGGAGTAATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1638 FBgn0039855 FBtr0113315 2 1 1 87 3R 27416803 27416821 ATCAACTTTAGAGGCTTCG 57 27416931 27416950 CTTTCAGGTGCCTATTACAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG11337 FBgn0039846 FBtr0085812,FBtr0085811 1 2 3 80 3R 27230185 27230203 GAGGAAGGAGAGGAATCCA 59 27230067 27230141 TCATGTTACGTCCATTGCT 59 NA Drosophila melanogaster 50 CG15543 FBgn0039799 FBtr0085700 1 1 1 64 3R 26568791 26568809 GGATGGAGTGACAGATGTG 59 26568837 26568855 ATATCTCTACGCCGATCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31016 FBgn0051016 FBtr0085668 2 1 1 85 3R 26432698 26432716 AATACCATGAGGTGATGGG 58 26432765 26432838 GATGGATACATTGCCACTG 58 NA Drosophila melanogaster 50 alph FBgn0086361 FBtr0085444 3 1 5 196 3R 25420045 25420066 CAAATCGAGAAGATCACAAGAG 59 25423191 25430245 GAGATTCCATTGCCTTCAC 58 NA Drosophila melanogaster 50 CG11874 FBgn0039634 FBtr0085416 3 1 1 81 3R 24936989 24937092 GACTGGATGATGAATTCAAGG 58 24936928 24936946 AATAGGTTTACATCGCGCT 59 NA Drosophila melanogaster 50 Sirt7 FBgn0039631 FBtr0085364 1 1 1 60 3R 24883840 24883860 GTCCAGCATACAGATAAAGAG 57 24883882 24883900 TTCGTTATCGTTCTCTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ssl2 FBgn0041780 FBtr0085343 1 1 1 83 3R 24857891 24857909 AGTCGGTTCAACCTATCAC 58 24857771 24857789 CTAAACCCACTGGATAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12558 FBgn0039599 FBtr0085311 3 1 1 60 3R 24616787 24616805 ATTGATCTCTGCGAGTCAC 59 24616829 24616847 GCTGTGACATGTACATGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5484 FBgn0039450 FBtr0085037,FBtr0085039,FBtr0085038 1 3 3 88 3R 22544580 22544653 ATGCATAAGGATTGGTCCC 59 22544705 22544723 GTGGGCAGATAGAGATCTG 58 NA Drosophila melanogaster 50 CG31084 FBgn0051084 FBtr0085007 3 1 1 96 3R 22253826 22253844 AATACAGTTACACAGCGGG 59 22253996 22254014 TGTAATAACGGCAGCAGAG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14544 FBgn0039407 FBtr0084969 1 1 1 159 3R 21885844 21885862 CTTCGTCACCGTCTATCAC 59 21886660 21886678 AAACGAACAGAAACGACCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG14543 FBgn0039404 FBtr0084968 1 1 1 60 3R 21882776 21882797 GAATTGAGTAAACTTCCTGCTG 59 21882816 21882836 TGTAGGTGATCTTAACATCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LpR1 FBgn0066101 FBtr0113480,FBtr0084926,FBtr0084925,FBtr0113481,FBtr0113479,FBtr0113482 3 6 6 136 3R 21567978 21567996 CAACTCGATGAACTTCGAG 58 21567719 21567878 CTATGACGGGTGAGTACTC 58 NA Drosophila melanogaster 50 CG4685 FBgn0039349 FBtr0100571,FBtr0084891,FBtr0100570,FBtr0100569 2 4 4 192 3R 21452227 21452245 GATTCCAGCAATGCAAAGG 59 21451877 21452071 GTTTGTGCCACTTCTTGAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12250 FBgn0039345 FBtr0084894 1 1 2 112 3R 21434507 21434594 GTTAAGAAAGAATCTGGTACCG 58 21418574 21418595 CTCCAACAAGTGTTATGAACAG 59 NA Drosophila melanogaster 50 msi FBgn0011666 FBtr0084881,FBtr0084882 1 2 2 133 3R 21425813 21425831 CCTCATATCACAGAACCCA 58 21425928 21426005 AGTAGGGTGCATATCTGAC 58 NA Drosophila melanogaster 50 dan FBgn0039286 FBtr0084803 2 1 1 60 3R 21017557 21017577 CAACTTCGTTTCCTAATAGCC 59 21017598 21017617 ATTTCTCGATCATCGGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625 1 8 17 81 3R 20521108 20521126 GACGCTGATCAAGAAATGC 59 20521842 20528756 ACGAGTGATATCACCTAAGTC 58 NA Drosophila melanogaster 50 cav FBgn0026257 FBtr0084557,FBtr0084558,FBtr0084556 3 3 4 84 3R 20048170 20048188 TTGATTCTATGGATGCACG 57 20048297 20048315 AAAGCTCCTTTACCTCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5510 FBgn0039160 FBtr0084576 1 1 1 94 3R 19993858 19994206 TGAACGTAAATCACGATGAG 58 19993783 19993801 CTTGGGATCTTCTTTGTGC 58 NA Drosophila melanogaster 50 Pli FBgn0025574 FBtr0112908,FBtr0084527,FBtr0112907 3 3 3 94 3R 19691346 19691364 GAATCTCCCATACTGGCTG 59 19688922 19691288 AAGTAACCATTGTAGCCGA 58 NA Drosophila melanogaster 50 CG10168 FBgn0039087 FBtr0084418 2 1 1 60 3R 19362917 19362935 ACTCGACAGCATACTAACC 58 19362875 19362893 AAAGATCAGCGATCCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34111 FBgn0083947 FBtr0110800 2 1 1 104 3R 19067707 19068051 GTTCATCTAGTCTCTGGCG 59 19067621 19067639 TGATCCCATTGAGCATCTG 59 NA Drosophila melanogaster 50 CG31156 FBgn0051156 FBtr0100546 3 1 2 98 3R 18436300 18436318 AATGTCACTTTCGTGTTGC 59 18435186 18436240 TCACATTCTCCGACAATAGAG 59 NA Drosophila melanogaster 50 CG34376 FBgn0085405 FBtr0112609 2 1 2 270 3R 18283136 18283154 AACGAACTGTATATGCCCA 58 18285752 18285770 TGTTGGTCACGATTATGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG7059 FBgn0038957 FBtr0084221,FBtr0084219,FBtr0084220 1 3 3 138 3R 18217576 18217650 CACATTGAGGGAATCTCCA 58 18217750 18217770 GCCTAATATACTCCTGATCCC 58 NA Drosophila melanogaster 50 sar1 FBgn0038947 FBtr0084209,FBtr0084210,FBtr0084206,FBtr0084207,FBtr0084208 1 5 5 60 3R 18184316 18184335 CTTCACTACATTCGACTTGG 58 18185254 18185272 GAAGTAGTCCTTCCAGACG 59 NA DesignNoJunction Drosophila melanogaster 50 fit FBgn0038914 FBtr0084153 1 1 1 60 3R 17710120 17710139 GGTGATTCTACTTCTTTCGG 57 17710079 17710099 CTCAGACCAACGAATATTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 C15 FBgn0004863 FBtr0084111 3 1 1 181 3R 17328255 17328273 GTATCCGCATCTCTATCCC 58 17332879 17332897 GATTCTGGTAGGGATGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 AnnIX FBgn0000083 FBtr0089517,FBtr0089520,FBtr0089518,FBtr0089519 2 4 4 243 3R 16893207 16893794 TACTACCCATTCAAGTGCA 58 16894001 16894019 TAACATCCTCGAATTTGCC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Mvl FBgn0011672 FBtr0089521,FBtr0089522 3 2 3 185 3R 16881620 16881699 TTTGTTAATGGACTGGGCA 59 16881390 16881408 AGCCATGTGTATCACAAGG 59 NA Drosophila melanogaster 50 GluRIIE FBgn0051201 FBtr0110837 1 1 1 80 3R 16473219 16473298 TTCTCTATGAGTCAGCCGA 59 16473157 16473175 CCGTTATTACAGTTCCGCT 59 NA Drosophila melanogaster 50 ATPsyn-d FBgn0016120 FBtr0083728,FBtr0083727 1 2 2 91 3R 14921153 14921171 AATCCTCGATCAACTGGTC 59 14921226 14921244 ATAGATGTCCGACTTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34283 FBgn0085312 FBtr0112479 2 1 1 60 3R 14547829 14547848 TACAACCCTAGTCTTCACTG 58 14547788 14547806 GTGTAGCTCCATGTATGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fru FBgn0004652 FBtr0083641,FBtr0083643,FBtr0083645 2 3 13 91 3R 14340833 14340851 GAACATCGAAACGGATGTG 59 14261499 14340778 GGTCAGTGTTGTACCTAGG 58 NA Drosophila melanogaster 50 CG7146 FBgn0038593 FBtr0083601 2 1 1 119 3R 14099101 14099178 TAGATCTGGTCTGGGATGAG 59 14099001 14099020 ATTTCGTCTTCTGTAGCTCG 59 NA Drosophila melanogaster 50 CG5873 FBgn0038511 FBtr0083442 2 1 1 131 3R 13261668 13261686 TACCATCAGTTTGGTGAGC 59 13261780 13266665 GTTGTACGGGTTTAAAGTGC 59 NA Drosophila melanogaster 50 Keap1 FBgn0038475 FBtr0083423,FBtr0083424,FBtr0083422 1 3 3 81 3R 12901902 12901979 AAATTTCACTCAGGTGTGC 58 12901839 12901857 TTCATCCCTTCGTATCAGG 58 NA Drosophila melanogaster 50 mRpS11 FBgn0038474 FBtr0114468 2 1 3 101 3R 12898897 12898957 ATCACAAAGTATCCCTCTTTCC 59 12899019 12899037 CTTGAGCTGCTATGTTGGT 59 NA Drosophila melanogaster 50 CG4009 FBgn0038469 FBtr0083430 1 1 1 104 3R 12860117 12860135 ATTTCGCTCACGAAATTCC 58 12859973 12859991 CATGGTACTCCAAGGTACC 59 NA DesignNoJunction Drosophila melanogaster 50 Irc FBgn0038465 FBtr0083371 3 1 1 85 3R 12832407 12832483 GCATTATCTCTGAGCAATTCG 59 12832529 12832548 ATATTGCTCCACCAGTTCAG 59 NA Drosophila melanogaster 50 CG31498 FBgn0051498 FBtr0083339 3 1 1 76 3R 12490632 12490650 AAGCTGTTTCATATCTGCG 58 12490690 12490708 GTTTCCGTCTAATGAGCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gish FBgn0011253 FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333 2 6 8 138 3R 12118541 12119712 CTATTAGGATCACATGCCGA 59 12119813 12119831 GGGCGCAAATATTGAAGAG 59 NA Drosophila melanogaster 50 CG34276 FBgn0085305 FBtr0112471 3 1 1 91 3R 11752006 11752024 CTGCAGCAGAGTTATTCGA 59 11752148 11752167 GAGTTGTAGAACCAATTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arpc3A FBgn0038369 FBtr0083181 3 1 2 60 3R 11660795 11660923 CGTACGAAATCAAGTCCGA 59 11660946 11660965 TCTGTTATGTAGAGCGTCAC 59 NA DesignRelaxed Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 1 7 12 158 3R 11122418 11125004 GAAATACGATGAGGTTGCC 58 11126525 11126543 TTCTCCTCAGAGACTTCCA 59 NA Drosophila melanogaster 50 stumps FBgn0020299 FBtr0112893,FBtr0082958 1 2 3 113 3R 10418460 10418478 GAATTCTTGCAACGAGACC 59 10418555 10418734 GATTTGCTACTTGTTGGCG 59 NA Drosophila melanogaster 50 CG7987 FBgn0038244 FBtr0082978,FBtr0082979 1 2 2 75 3R 10400292 10400310 GTAATCACAGACGACTGGG 59 10400170 10400188 TAATCCCAGCTATCTGCTC 58 NA DesignNoJunction Drosophila melanogaster 50 su(Hw) FBgn0003567 FBtr0082945,FBtr0082946 1 2 2 93 3R 10132881 10132899 AGAAGATCGAGAAGGATGC 58 10132740 10132824 TTAATGTGACCCAGATGGA 57 NA Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 2 8 8 284 3R 9504400 9504475 AACACGACGTAAATCAGGA 58 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Past1 FBgn0016693 FBtr0082655,FBtr0082654 3 2 2 165 3R 8529509 8529527 AGTCGATGGCAAGATATCC 58 8529717 8529737 CAGCTTGACGTTGATTAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14394 FBgn0038079 FBtr0114501,FBtr0113226 2 2 6 60 3R 8522002 8522020 GTCTGTCCATAGTCATGCA 59 8522808 8522827 TTGATGAGGGACTGAATGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5509 FBgn0038054 FBtr0082633 2 1 1 60 3R 8278547 8278566 GTCAGAAACTGAGTGACCTC 59 8278586 8278607 TCGTACGGACTAAAGTTAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31116 FBgn0051116 FBtr0082527,FBtr0082526 1 2 5 124 3R 7628396 7629444 CTACTATATGTATGGTCGCTATACC 59 7628048 7628314 CCAGCAGTTCCTTATTCCT 58 NA Drosophila melanogaster 50 Sbf FBgn0025802 FBtr0082530,FBtr0082529 2 2 2 81 3R 7617739 7617819 GCTTTATGCATTGGGAGAG 58 7617676 7617696 ATAGTCTACGGGAATGAAGTC 58 NA Drosophila melanogaster 50 CG14712 FBgn0037924 FBtr0082418 1 1 1 117 3R 7455337 7455355 GAATCGACCCATATTGCAC 58 7455436 7455517 CTGTTGCGTATCTTCAGTG 58 NA Drosophila melanogaster 50 CG14711 FBgn0037922 FBtr0082416 3 1 1 87 3R 7449944 7449962 ATATCTACTCCAAGCGAGC 58 7450013 7450093 GATTTGCTGCATATTTCGC 58 NA Nonspecific Drosophila melanogaster 50 CG6791 FBgn0037918 FBtr0082459 2 1 2 159 3R 7412223 7412241 GATACGCTATTGAGCACCA 59 7411170 7411188 ATTAGTCGAAGCAGTGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 wkd FBgn0037917 FBtr0082414,FBtr0082413 3 2 2 190 3R 7409610 7409628 AAATGTTTCTCGACGAGCA 59 7409782 7409858 GTCCTGCAGGTATACATCG 59 NA Drosophila melanogaster 50 nocturnin FBgn0037872 FBtr0113220,FBtr0113218,FBtr0113219 3 3 3 96 3R 7032963 7033087 ACATCCTATCACAAACTCTCG 59 7033145 7033163 TGGACAATCAGGTACTTGC 59 NA Drosophila melanogaster 50 CG6465 FBgn0037818 FBtr0082323 2 1 1 81 3R 6501868 6501886 CTCCCTTGCTAATGGTCTG 59 6501748 6501823 CATTTGTGGAGGTTAGCCT 59 NA Drosophila melanogaster 50 mthl11 FBgn0045443 FBtr0082247 2 1 1 137 3R 6227923 6227942 TATTATCGTGTGGAGCTCTG 58 6228039 6228119 GACCATCCATTGGTAAATATCC 58 NA Drosophila melanogaster 50 CG31406 FBgn0051406 FBtr0082235 1 1 2 249 3R 6174761 6174779 TAAGAAATTGCCGACTGCA 59 6175535 6175553 CGACTTCTTTAGGCTTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG34303 FBgn0085332 FBtr0112499 2 1 1 91 3R 5977110 5977128 ATGTTAATCACACCTGCCC 59 5976968 5976986 TGGGAATTTCGCTAAGACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3940 FBgn0037788 FBtr0082179 3 1 1 105 3R 5938511 5938529 CATTTAATCGCCCTCTCCT 59 5943393 5944014 TTGGAAATGGCTCATCCTG 59 NA Nonspecific Drosophila melanogaster 50 CG16817 FBgn0037728 FBtr0082082 2 1 1 63 3R 5504316 5504334 GCAATGACTTGATCTACGT 57 5504361 5504450 TCCGTAACTTTGTGTTCGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG9393 FBgn0037710 FBtr0082113 2 1 1 88 3R 5387716 5387909 GATTTACAACCAGCTAACGAC 59 5387648 5387666 ATTAGTCTAGGCCCTCCTC 59 NA Drosophila melanogaster 50 Rlb1 FBgn0014022 FBtr0082062 2 1 1 60 3R 5340043 5340062 AAGAAGAACCACAACTTGAC 58 5340083 5340103 GTAATGAAGAAGGGATCAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16749 FBgn0037678 FBtr0082057 1 1 1 177 3R 5157174 5157195 CTATGCCAACGATATTTCACTG 59 5156955 5156973 TGTGGATTGGATGTATCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11977 FBgn0037650 FBtr0081961 3 1 1 61 3R 4823639 4823657 CCAACAAGAAGCACATCAC 59 4823744 4823763 GTGATTTCTACCGCATTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Pif1A FBgn0027540 FBtr0091714,FBtr0091715 2 2 2 62 3R 4611483 4611502 AATGAACTCCTTGAGTTTCG 58 4610303 4611458 GGTGCTCTCCATCTTATCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Ubc84D FBgn0017456 FBtr0081552 3 1 1 60 3R 3344907 3344925 CATCGAAATCAACTTCCCG 58 3344865 3344885 CGTCTTGAATAGGATCTTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alphaTub84B FBgn0003884 FBtr0081639 1 1 1 60 3R 2913692 2913710 CCCTTAACGTGGATCTGAC 59 2913734 2913752 AAGTGAATACGTGGGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1939 FBgn0037469 FBtr0081638 1 1 1 60 3R 2908468 2908486 AAGATCGTCTGTGTAACCT 57 2908581 2908599 CATTGCGGGCTATTAATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1137 FBgn0037454 FBtr0081705 2 1 1 118 3R 2385095 2385113 CTGATAAGGAGGCCTACCT 59 2384936 2384955 TTTATTGGCCTTTACCAGAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG1041 FBgn0037440 FBtr0081734,FBtr0110774 2 2 2 106 3R 2198948 2199033 GTGGAATTTGACCAAGAACTC 59 2198862 2198880 CCAAGGGAATGGTCTTCTG 59 NA Drosophila melanogaster 50 jagn FBgn0037374 FBtr0078624,FBtr0078626,FBtr0078625 2 3 3 98 3R 1605869 1605888 ACGAGACAGACATCTTTGTG 59 1606011 1606029 AGTACAGCGTAAATCCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 plx FBgn0004879 FBtr0078718 1 1 2 92 3R 1533897 1534233 ATGGATAACATACCCAAGCAG 59 1534287 1534305 CACTAGGAACACCATCGTC 59 NA Drosophila melanogaster 50 CRMP FBgn0023023 FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686 2 4 4 113 3R 1400049 1400129 CTACATCAAGAATGGCGAG 57 1400402 1400420 CCAGGTATCGTTATTTCCG 57 NA Drosophila melanogaster 50 Itp-r83A FBgn0010051 FBtr0078686 2 1 2 93 3R 1356981 1356999 CTAAGACTTACGAAGACGC 57 1357055 1357390 CACCTTCGGAATCAATATCC 58 NA Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0110933 2 1 15 145 3R 1119479 1119798 GAAAGTATTCTCAAGCTCGC 59 1119353 1119371 CATAGGTCATGTGACCCTC 59 NA Drosophila melanogaster 50 Gnf1 FBgn0004913 FBtr0100159 1 1 2 111 3R 733740 733758 GAAGACTCTGGATGTGGTC 59 733832 733913 CAAATTGTGATTGGTCACGT 59 NA Drosophila melanogaster 50 CG41464 FBgn0084025 FBtr0111216 2 1 1 82 3R 283653 283786 CTAACTCTGAGAGTATCAACGG 59 283829 283847 GATGTTGGACGCTAATCCA 59 NA Drosophila melanogaster 50 CG9809 FBgn0037248 FBtr0078946,FBtr0078945,FBtr0078947 3 3 3 102 3R 251619 251639 GATGAATTACGCTATGTGGAC 58 251471 251555 GTTGTTCCGGCTTATTCTC 58 NA Drosophila melanogaster 50 CG11489 FBgn0025702 FBtr0112914,FBtr0078496 1 2 2 87 3L 22272066 22272084 TATTTGACAACCGGTTTCG 58 22272134 22272216 TTCTCATCTTTGAGATCCCG 59 NA Drosophila melanogaster 50 CG7133 FBgn0037150 FBtr0078485 2 1 1 60 3L 22067406 22067424 TACGAAGATCACTACCAGG 57 22067364 22067382 CCTTAATCTCACTGTCGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32448 FBgn0052448 FBtr0078449 3 1 1 129 3L 21821272 21821290 TTAGTGGAGAAGACGACGA 59 21821095 21821179 TAATCTTGTTCGGCTTGGT 59 NA Drosophila melanogaster 50 Syn1 FBgn0037130 FBtr0078450,FBtr0078451 3 2 2 169 3L 21739907 21739925 CTTCTTTCTGTACGACTGC 58 21739704 21739774 CCATGTCCAGTTCAATCTC 57 NA Nonspecific Drosophila melanogaster 50 CG7597 FBgn0037093 FBtr0078357,FBtr0078358 3 2 2 116 3L 21513429 21513511 TTACGGACAGGTTTACAAGG 59 21513590 21513608 TTGATTTCACGAACAGCTG 58 NA Drosophila melanogaster 50 CG33287 FBgn0053287 FBtr0078331 1 1 1 80 3L 20963060 20963079 ATTGAAAGCCTCTTTGATCG 58 20962786 20963020 GACAATCATTAGTGGTACTTCC 58 NA Drosophila melanogaster 50 Gr77a FBgn0045474 FBtr0078281 1 1 1 60 3L 20731349 20731367 CACTGTTAAGCAACTCAGG 58 20730841 20730861 CTCCACATTCTTCAGATACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17233 FBgn0036958 FBtr0074852,FBtr0074851,FBtr0074850 1 3 3 60 3L 20228032 20228050 CTTCTATCGCAACATGTCG 58 20227930 20227951 GAGGTAGAGTTTCTTAGTTTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14186 FBgn0036935 FBtr0074870 3 1 1 83 3L 20094090 20094336 CCGACTTTAATCGCAATGG 59 20094025 20094044 ATATGTTCGAGATGAGCAGC 59 NA Drosophila melanogaster 50 CG7757 FBgn0036915 FBtr0074892 1 1 2 124 3L 19904510 19904529 TATACTGACCCAGGATCTGG 59 19904616 19904688 GTTTCAAGGGCTCATTTGG 59 NA Drosophila melanogaster 50 Su(Tpl) FBgn0014037 FBtr0074920 2 1 1 295 3L 19889938 19890020 TAATCAATTTACCGCCTGC 58 19887745 19887763 TAATTGCCGGTCGATAGTG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG8743 FBgn0036904 FBtr0074952 1 1 1 277 3L 19709316 19709334 GCTGAGATGTACAACTGTC 57 19708917 19708935 GTATCACAACGTTGTAGGT 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 asf1 FBgn0029094 FBtr0074947 1 1 1 60 3L 19612400 19612419 AGATGATCTATGTAGGCTCG 58 19612442 19612460 TATATGGTGTCCAGCACCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9279 FBgn0036882 FBtr0074976,FBtr0074975 1 2 2 80 3L 19535274 19535409 CAGCTTCCAAAGAATCCAG 58 19535212 19535231 AGACAAGGTTACTTCTCCAG 58 NA Drosophila melanogaster 50 CG34255 FBgn0085284 FBtr0112449 1 1 1 106 3L 18863646 18863717 TTCAGCGGAAACTAATCGA 59 18863787 18863805 TTGATCAGTGGTTACGAGC 59 NA Drosophila melanogaster 50 CG9715 FBgn0036668 FBtr0075330 1 1 1 106 3L 16842400 16842480 AAAGAATGATGACAGGGCA 59 16842550 16842568 CATCTCAAAGCAGTTGGAG 58 NA Drosophila melanogaster 50 tra FBgn0003741 FBtr0075364,FBtr0100244 3 2 2 137 3L 16583384 16583460 GATTTCTACGGGATGTCTGG 59 16583266 16583284 GTTTCTGTAGCCAAATCGC 59 NA InUTR Drosophila melanogaster 50 CG34247 FBgn0085276 FBtr0112441 1 1 1 87 3L 16254433 16254451 AATCGCATCTTTACCACAG 57 16254364 16254382 ATGTACTCATAGGTCAGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13055 FBgn0036583 FBtr0075482 3 1 1 160 3L 16244436 16244454 CAAATCCGCATCGAATGTC 59 16244294 16244312 GATATGTGTAGGAGACGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5027 FBgn0036579 FBtr0075457 1 1 1 165 3L 16222732 16222807 AAGGAGTTCAAGGTTCGTG 59 16222936 16222954 TTAGCATGTCCACACTCTC 58 NA Drosophila melanogaster 50 Pgm FBgn0003076 FBtr0075492 1 1 1 128 3L 16119538 16119556 CAGATCCTGTCGACAAGTC 59 16119362 16119447 AATCAATGTACAAGCGAACG 59 NA Drosophila melanogaster 50 CG17029 FBgn0036551 FBtr0075514 2 1 1 60 3L 15971067 15971086 GTGATTGCCTACGAGATCTC 59 15971109 15971127 GCTTCACATTCTTGTCCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ind FBgn0025776 FBtr0075668 1 1 1 60 3L 15036334 15036352 CTGAAGAACCACTCTTCGG 59 15036292 15036310 CGGCATAATCGTTGATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8783 FBgn0036397 FBtr0075785 3 1 2 193 3L 13994634 13994652 GTATCCGTACCAGACTCTC 58 13994400 13994418 GTTTAACAGCAAACAGAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG17364 FBgn0036391 FBtr0075789,FBtr0075788 3 2 2 92 3L 13976266 13976284 TCAGCAAGACGAAGTATCC 59 13975941 13976211 TAAGCGGTATTCCTGTATCG 59 NA Drosophila melanogaster 50 CG32107 FBgn0052107 FBtr0075937 3 1 1 60 3L 12853421 12853439 CATCCATTCGCTTAGTGGT 59 12853379 12853400 TCCGAATAGATCGATTTATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18815 FBgn0042138 FBtr0076105,FBtr0076104,FBtr0076103 2 3 3 80 3L 11622536 11622554 AATGTGACGTTCAAGACGT 59 11622598 11622692 ACTGATGATGTCCTTGACG 59 NA Drosophila melanogaster 50 CG14137 FBgn0036178 FBtr0076144 1 1 1 73 3L 11592814 11592832 CACAGCCTACTACAGAAGG 59 11592759 11592777 ATATGTTCGGGAGTACGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mnf FBgn0036134 FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228 2 5 5 143 3L 11109449 11109535 ACAATACACAGGATCTGTTCC 59 11109326 11109344 ACGAATAAATGCCCGAGAG 59 NA Drosophila melanogaster 50 Mnf FBgn0036134 FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228 2 5 5 143 3L 11109449 11109535 ACAATACACAGGATCTGTTCC 59 11109326 11109344 ACGAATAAATGCCCGAGAG 59 NA Drosophila melanogaster 50 CG18628 FBgn0036091 FBtr0076256 3 1 1 204 3L 10632900 10632918 TGAAGTTCCTACTCGTGTG 58 10633149 10633167 CCAAATGGAGATGTCTAGC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG8072 FBgn0036070 FBtr0076295 1 1 1 60 3L 10145718 10145738 GCTCGTTTGCTATTATAGCTC 58 10145759 10145778 AATGCCTTCTTCGTATAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bol FBgn0011206 FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538 2 4 4 130 3L 9101077 9101096 TATACCCATGGATCAGTTCG 58 9100463 9100724 TGGTGGGTACATTCATTGG 59 NA Drosophila melanogaster 50 CG5288 FBgn0035950 FBtr0076553,FBtr0076555,FBtr0076554 1 3 3 80 3L 8977957 8977977 CTTCAACTCAGAAATCTCGAG 58 8977752 8977915 CTTTGGAAGCTCGATTCTG 58 NA Drosophila melanogaster 50 CG13667 FBgn0035890 FBtr0076610,FBtr0076611 3 2 2 60 3L 8399338 8399356 CGATGTACTCGATGTTCAG 57 8399379 8399398 AAGGTCGAAGAATGTTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Atg18 FBgn0035850 FBtr0076693,FBtr0076691 1 2 3 88 3L 8180667 8180921 AGAACATAACTTCCCTGGC 59 8180973 8180991 GTAGATCTTGTCCAGGGTC 58 NA Drosophila melanogaster 50 CG7942 FBgn0035838 FBtr0076686 3 1 2 109 3L 8115188 8115206 AGTACCTGGATATGTGCTC 58 8115334 8115352 CTCCTGCAGGTAATTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13681 FBgn0035832 FBtr0076679 2 1 1 76 3L 8065334 8065352 GAACTCATCGGATATCCGG 59 8065392 8065410 ACTTACCACTCATCACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8209 FBgn0035830 FBtr0076753 1 1 1 256 3L 7970266 7970284 GAAGAAGATCGTTGAGCAG 58 7970560 7970578 TTTCCTGTAGTGTTGAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112693 3 1 10 156 3L 7657049 7657067 CGAGAGCTATACGGTTGTG 59 7656408 7656930 TCTTTCGTGAAGGGTTTCTC 59 NA Drosophila melanogaster 50 mus312 FBgn0002909 FBtr0110926,FBtr0076840,FBtr0076839 1 3 3 81 3L 7323268 7323287 ATGAAGAGAAGTCCACTGAG 58 7323328 7323408 GATTTATAATCTTCCTTGGCGG 59 NA InUTR Drosophila melanogaster 50 Or65c FBgn0041623 FBtr0077006 2 1 1 123 3L 6321948 6321969 GGATCCAAGGATGTTTATAGAG 57 6322052 6322128 ATTGGTTAAGTATAGCGCTG 57 NA Drosophila melanogaster 50 CG13293 FBgn0035677 FBtr0077050 2 1 1 138 3L 6080582 6080600 GTCTACACCAAGTTGTGGA 59 6080699 6080781 CGCTGGTTCTTAAGTAATAGTG 58 NA Drosophila melanogaster 50 vn FBgn0003984 FBtr0077082 3 1 2 96 3L 5809797 5810649 CGAGGTCTATTGTAGGTGC 59 5807939 5807957 TATTTGGCCGTAGATTGCA 59 NA Drosophila melanogaster 50 CG10671 FBgn0035586 FBtr0077178 3 1 2 98 3L 5138318 5138336 TTAACGTCGTGGAGAACTC 59 5138179 5138197 TATCAAAGCCCTTCCACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1332 FBgn0035514 FBtr0073224 1 1 1 80 3L 4217341 4217359 ACAGAGATGGATCAATCGT 58 4217403 4217485 TCATTGTAGGATCGACCTG 58 NA Drosophila melanogaster 50 CG14983 FBgn0035479 FBtr0073170 3 1 1 61 3L 3949209 3949229 CAAGAGATCATTCTCGAGGAG 59 3949168 3949186 GATTCCAGTTGGGCTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PHGPx FBgn0035438 FBtr0073068,FBtr0073066,FBtr0073067 3 3 4 214 3L 3328064 3328082 CTGGTGATCCTCAACTTCC 59 3328326 3328345 GTGAAGTTCCACTTGATTCC 58 NA DesignNoJunction Drosophila melanogaster 50 aly FBgn0004372 FBtr0073006 1 1 1 95 3L 3026048 3026066 TAGATGTTTCGGAGGACGA 59 3025908 3025992 GGAAATTGTACAATCTCTTGCC 59 NA Drosophila melanogaster 50 zormin FBgn0052311 FBtr0110858,FBtr0110856 3 2 4 136 3L 2125346 2125365 GATGTTAGCAGGGAGATCAG 59 2124604 2125249 CATTTGGTTCCGTATTGAGAG 59 NA Drosophila melanogaster 50 CG9184 FBgn0035208 FBtr0072726 1 1 2 183 3L 1322443 1322551 GAAGACCATTGAGGATCAG 57 1322278 1322296 GTAGCCATTGTAGTAGGGA 57 NA Drosophila melanogaster 50 CG9134 FBgn0035199 FBtr0072661,FBtr0072660,FBtr0072659 1 3 3 103 3L 1269166 1272974 TTCTTCAAGGCAAACTGGT 59 1273041 1273059 TGCTTCTCCAGTCTATCGT 59 NA Drosophila melanogaster 50 trio FBgn0024277 FBtr0072648,FBtr0072646,FBtr0072645,FBtr0072649,FBtr0072644,FBtr0072647 1 6 6 80 3L 998874 998892 GAATACATAGTCAGTGCCC 57 998720 998831 CAAGTTACTCAGATCCAGAC 57 NA Drosophila melanogaster 50 CkIIalpha-i3 FBgn0025676 FBtr0072604,FBtr0072603 1 2 2 80 3L 709131 709151 GGTGAATTTACCGATGAAGAG 58 709015 709091 TTCAACAGTCTCCTTGATCTC 59 NA Drosophila melanogaster 50 mth FBgn0023000 FBtr0072571 3 1 2 102 3L 344175 344196 GGTGGCTGACTATTTAAATTGG 59 343640 344113 TTTAGGATGGTTCCTCTCCT 59 NA Drosophila melanogaster 50 RhoGEF3 FBgn0035128 FBtr0089651,FBtr0089653 1 2 4 153 3L 300966 300984 AACTGAAAGTACGGATGTG 57 301101 301173 TATCATAGGTGCTACTGCC 58 NA Drosophila melanogaster 50 mri FBgn0035107 FBtr0072481,FBtr0072480,FBtr0072482 3 3 3 241 3L 201532 201550 GATACGCTGTGGCATAGAG 59 201755 201831 GAATCGGATTTCCACTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 Peb FBgn0004181 FBtr0072454 1 1 1 60 2R 21063167 21063188 TTCGGATTTAGTTCACCTAGTC 59 21063128 21063147 CTAAAGGACCAAATTTCCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4806 FBgn0035048 FBtr0072332 3 1 1 112 2R 20554458 20554476 TTTCCTATCCTTCGACACG 59 20554307 20554325 CCTCTATACTGAACGCGAC 59 NA DesignNoJunction Drosophila melanogaster 50 Dat FBgn0019643 FBtr0072255,FBtr0072254 3 2 2 157 2R 20043491 20044428 TTTCTTCAAGGATGAACCG 57 20044547 20044567 GCCTCATAAGTCCATTTAGGA 59 NA DesignRelaxed Drosophila melanogaster 50 yki FBgn0034970 FBtr0072183,FBtr0072184 1 2 3 155 2R 19953829 19954696 AAAGCAGAATGAATCTGGG 57 19953609 19953627 TACCATTCCAAATCGTCAG 57 NA Drosophila melanogaster 50 CG30177 FBgn0050177 FBtr0072122 1 1 1 60 2R 19689583 19689601 GATCAATAACCGTCTGCTG 58 19689625 19689643 ATTCTTTGCAATCTGCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3502 FBgn0046253 FBtr0072039 1 1 1 106 2R 19233393 19233411 GATGAACCATCCTGGAAGG 59 19233188 19233323 GTTGAGGTCTGATCCTGAC 59 NA Drosophila melanogaster 50 CG3700 FBgn0034796 FBtr0071904 3 1 1 162 2R 18782509 18782590 GAGACGGATGAATCGAAGG 59 18782713 18782734 CTTCAGTATCATATCCAGGGTG 59 NA Drosophila melanogaster 50 Ugt58Fa FBgn0040091 FBtr0071934 1 1 1 88 2R 18530877 18530895 ATAACGTTACCGAAACGGT 59 18530751 18530769 AAGATCAGCAAGGTTTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 bonsai FBgn0026261 FBtr0071860 3 1 1 184 2R 18525695 18525713 CGATGAGATGGTCAAGGAG 59 18525918 18525938 AGTACTTGAGGAACTTCTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 wdp FBgn0034718 FBtr0071849,FBtr0071852,FBtr0071851 1 3 4 133 2R 18188505 18195724 GTCTTATAGAAGATAAGACGCC 57 18188393 18188411 CAACCACAATGAGGAACAG 58 NA InUTR Drosophila melanogaster 50 CG30401 FBgn0050401 FBtr0071731 3 1 1 60 2R 17873721 17873740 AACATTAATGGTCATCCGGT 59 17873680 17873698 ATGTAGCTGCTGAATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30395 FBgn0050395 FBtr0071715 2 1 1 82 2R 17653339 17653357 AGATGGTGCTACTATCGGA 59 17653403 17653515 CTCCTGCTTCCTTTACTGG 59 NA Drosophila melanogaster 50 CG15676 FBgn0034651 FBtr0071668 1 1 1 60 2R 17559508 17559527 ATCCTGACAAGGAAGTTCAC 59 17559549 17559568 CTCACCCATCTGAATACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10440 FBgn0034636 FBtr0071692 1 1 1 92 2R 17449354 17449372 AAGACTTCTGATTGCCGAG 59 17449078 17449096 TCCAGCTGCTTAATCATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Acox57D-d FBgn0034629 FBtr0071607 3 1 1 116 2R 17277626 17277645 GAGGAGGTCTACAATTCCAC 59 17277724 17277803 ATTGAATAGTCCTCCAGGC 58 NA Drosophila melanogaster 50 CG10795 FBgn0034626 FBtr0071609 2 1 1 72 2R 17271324 17271342 GAATGGCTATCACCTGGAC 59 17271270 17271288 ATAGAATCTATCCACGCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11110 FBgn0034535 FBtr0086231 2 1 1 146 2R 16529636 16529654 AGAAGATTATCAAGCGCGT 59 16529764 16529782 GTCCAAAGGTATTGCTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hil FBgn0050147 FBtr0086256,FBtr0086255 3 2 2 98 2R 16502074 16502092 TTGCTTCAAATGCGTACAC 59 16500960 16502013 TGTGAACTGCAATAGACCTC 59 NA Drosophila melanogaster 50 CG13434 FBgn0034523 FBtr0086257 1 1 1 119 2R 16473904 16474127 AACTTGAGATTGCTATGGC 57 16473803 16473821 TAACTTTCTCGTACTGCGA 58 NA Drosophila melanogaster 50 CG9864 FBgn0034490 FBtr0086320 3 1 1 82 2R 16136023 16136041 ATTAACTGTGTTGGCACCA 59 16135894 16135977 TGATCGATTGTGTTCTCGT 59 NA Nonspecific Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457 2 11 15 108 2R 15365201 15366256 TTCACTCTGGTCAAACCAG 59 15366328 15366346 TTGGAGAAGAAGCTCATGC 59 NA Drosophila melanogaster 50 cora FBgn0010434 FBtr0086507,FBtr0086509 1 2 4 182 2R 15124300 15124318 TTCAATAGGACTCTGTCCG 58 15124561 15125668 CTTATCAGCATCCTTCTCCT 58 NA Drosophila melanogaster 50 CG30125 FBgn0050125 FBtr0086595 1 1 1 60 2R 14982815 14982833 GTGACCATCGATATTGTCC 57 14982773 14982793 GCTGAAATAACTCGTACTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5335 FBgn0034365 FBtr0086708 3 1 1 100 2R 14510049 14510067 CGATGAGAAGGCAGTAGTG 59 14510186 14510205 TGAATTGCTGGTTAAAGACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG30115 FBgn0050115 FBtr0086716,FBtr0086717 2 2 2 60 2R 14442939 14442957 CAACAAGCAACAGAAGAGG 58 14442897 14442915 ACGACTTATATCGGGACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GstE5 FBgn0063495 FBtr0086673 2 1 1 60 2R 14292348 14292366 CATTATCGCGTATCTGGTG 58 14292390 14292408 CAGATCTCTGGGATACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 thr FBgn0003701 FBtr0086825 2 1 1 82 2R 13752032 13752051 ATATTAATTGGAAACCGGCG 58 13751911 13751932 CATTGAGTATTTGACTACTCCC 58 NA DesignNoJunction Drosophila melanogaster 50 Bap55 FBgn0025716 FBtr0086960 3 1 1 113 2R 13317310 13317329 TCTTTGACAATGCAATGCTG 59 13317157 13317234 TATTGCCACCAGTAACGAC 59 NA Drosophila melanogaster 50 GstS1 FBgn0010226 FBtr0087005,FBtr0100258,FBtr0087006 3 3 3 121 2R 12981866 12981885 CATTCTACCTGGAGAAGCTC 59 12981677 12981697 GACCATGTAGTTCATGTAGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6796 FBgn0034177 FBtr0087057 2 1 1 169 2R 12889886 12889967 GAAATGTTGGCTGAAGGAC 59 12890099 12890118 TCCATGTAGTCGTGTATAGC 58 NA Drosophila melanogaster 50 CG30461 FBgn0050461 FBtr0100249,FBtr0100251,FBtr0100250,FBtr0100252 2 4 4 60 2R 12883925 12883943 GGCATTTGCTATTGTTCCT 58 12883883 12883901 TACTGAGAATAAGCTGCCA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Amyrel FBgn0020506 FBtr0087117 3 1 1 64 2R 12539132 12539150 CATTTGGCCTATCCCTACG 59 12539086 12539104 GTATCGTGGTCATCGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rrp42 FBgn0034065 FBtr0087206 3 1 1 142 2R 11903003 11903075 ACATCCTGATTCTGGAGTG 58 11903179 11903199 ATTGTCCGATATGATGAGGTC 59 NA Drosophila melanogaster 50 l(2)k05713 FBgn0022160 FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309 1 4 4 83 2R 11747749 11747767 GAACTTCCTCGAGATCCAC 59 11747609 11747702 ACTGCTCTAGATCTAGGCC 59 NA Drosophila melanogaster 50 CG8214 FBgn0034037 FBtr0087320 2 1 1 260 2R 11575755 11575773 ATAACACAGAGTTCGAGCA 58 11575449 11575467 GATCCATGTCCAGGATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 fus FBgn0023441 FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343 1 4 6 110 2R 11555363 11559507 CAACTGGACAGATCGTAGG 59 11555271 11555289 TGTTATTGGTGACACTCGA 58 NA Drosophila melanogaster 50 CG30471 FBgn0050471 FBtr0087333 1 1 1 138 2R 11423919 11424004 CTTCTTTACCATCAGTGGCT 59 11424105 11424123 CAATCTCAGGTAGCGATGG 59 NA Drosophila melanogaster 50 CG34123 FBgn0083959 FBtr0114580,FBtr0110832,FBtr0114579,FBtr0110831,FBtr0110833,FBtr0113485 3 6 6 80 2R 11165813 11166764 GAACAAGAATCTGATTACCGTC 59 11165754 11165773 GTTAGGATGGTCTGATCCAG 59 NA Drosophila melanogaster 50 Tfb1 FBgn0033929 FBtr0087548,FBtr0087549,FBtr0087550 1 3 3 104 2R 10251345 10251363 TAACCAGCGATGAGTTCTG 59 10251489 10251507 TTATGTCAGCCAGAAAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 stj FBgn0033870 FBtr0087631 3 1 1 80 2R 9697166 9697428 CTGATTCAAGCCAATCTGG 58 9697471 9697490 ATAATTGGCGATCGATTTGG 58 NA Drosophila melanogaster 50 Roe1 FBgn0014877 FBtr0087675 2 1 1 188 2R 9442024 9442042 GGACAAATACAAGCGTTCG 59 9442538 9442557 TTCTTCAAATCAGCATTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8768 FBgn0033769 FBtr0087871 1 1 1 151 2R 8579233 8579307 AGTTTAGCAAAGCCTTTGC 59 8579100 8579118 AAATCCGGATGATAGAGCT 57 NA DesignRelaxed Drosophila melanogaster 50 CG8839 FBgn0033717 FBtr0087959,FBtr0087957,FBtr0087960,FBtr0087958 3 4 4 114 2R 8228118 8228136 TTCTTCTACCAAGAGTCCG 58 8227961 8227979 TCTGATTGCCGAACTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34233 FBgn0085262 FBtr0112427 3 1 1 257 2R 8170328 8170346 CTGATAAGTAGCTGGCGAC 59 8171529 8171547 AAATTTCTGCCAGGAGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Sr-CII FBgn0020377 FBtr0088004 3 1 1 110 2R 8096891 8096980 CAGCACATTACAGTTACCA 57 8096799 8096817 GACTATCAAAGCTGGATGC 58 NA Drosophila melanogaster 50 CG8889 FBgn0033675 FBtr0088026 3 1 3 147 2R 7914576 7914594 TTTACTACATGGCCCAGTC 58 7914333 7914409 CACTATGATGTGAGGCTGG 59 NA InUTR Drosophila melanogaster 50 tou FBgn0033636 FBtr0088092,FBtr0088091 1 2 5 145 2R 7469246 7470530 TTATGAAAGCGAATTGCCAG 59 7468891 7469138 CTCGTAGCAGTACCAATCG 59 NA Drosophila melanogaster 50 CG7741 FBgn0033615 FBtr0088118 1 1 1 97 2R 7191260 7191336 TAAGCATATCACTGTTCCCA 58 7191396 7191414 GATTGGTGCAGATTTCACC 59 NA Drosophila melanogaster 50 CG12938 FBgn0033554 FBtr0088248 3 1 1 60 2R 6708896 6708915 CTTTGATCACTTTATGGTGC 57 6708855 6708873 CAAGTACGAAGGTATGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 psq FBgn0004399 FBtr0088276 2 1 12 132 2R 6500313 6500331 CCGCACTATACGAATTTGG 58 6500427 6500499 TTAATGCATCTTTCTCGCC 58 NA Drosophila melanogaster 50 Cyp49a1 FBgn0033524 FBtr0088311,FBtr0088313,FBtr0088312 3 3 3 81 2R 6338171 6338266 GTAAAGGAAACTCTACGAATGC 59 6338111 6338129 GGTAACCATTGATGACAGC 58 NA Drosophila melanogaster 50 CG12134 FBgn0033471 FBtr0088388,FBtr0088389 2 2 2 60 2R 5859637 5859655 AGTAAACGTGTTCGATGTG 58 5859678 5859697 GTTGAAGGTGTTAAGCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1776 FBgn0033441 FBtr0088497 2 1 1 82 2R 5608220 5608240 CCAGAAGTTGTGAACTTTGAC 59 5607468 5608176 CCTGAGATGAGCACATAGC 59 NA Drosophila melanogaster 50 Updo FBgn0033428 FBtr0088524 2 1 2 202 2R 5473108 5473126 TACCTGAAGAGAATACGCG 58 5473351 5473369 CCTTGCAACGTAATGTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1809 FBgn0033423 FBtr0088520 3 1 1 63 2R 5450903 5450990 GTTATCCTTATCGTGACCAG 57 5451016 5451034 TAGGGCAGATTATCATCCG 58 NA DesignRelaxed Drosophila melanogaster 50 Rme-8 FBgn0015477 FBtr0088618 1 1 1 80 2R 5057398 5057416 GTGGAAATTCAATGCATCG 57 5057280 5057354 GACAGTAGAGTTATCCGGG 58 NA Drosophila melanogaster 50 CG30355 FBgn0050355 FBtr0088726 3 1 1 62 2R 4567155 4567174 CGCACATATTCCTCTAAGCA 59 4567112 4567130 CTCAAGGGTAACTCCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18853 FBgn0042173 FBtr0089426 2 1 1 299 2R 3717029 3717108 CAAGGTCAGAGCAATTATACC 58 3717368 3717387 ATAGTGCTCGTTGTAGAAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG1550 FBgn0033225 FBtr0088899 2 1 1 60 2R 3698941 3698959 CCAACTTTCGACTTGTTCC 58 3698899 3698917 AAGAGCACACTGTATGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp42En FBgn0033135 FBtr0089034 2 1 1 137 2R 2940733 2940816 GTTTGGAGCTATGTGATCTG 58 2940915 2940934 CACATTGGTCCTTTGATCAG 58 NA Drosophila melanogaster 50 CG33558 FBgn0053558 FBtr0113470 1 1 2 85 2R 2814317 2816022 ACTTTGACGACTATGCCAC 59 2814250 2814269 GAGATTCTCGAGGAATTCGG 59 NA Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086205,FBtr0086204,FBtr0086197,FBtr0086201,FBtr0086196,FBtr0086198,FBtr0086202,FBtr0086199,FBtr0086200,FBtr0086203 1 10 11 67 2R 2764942 2764960 AAGTGGAATTGTCTGAGGT 58 2764829 2764847 AAATTCAGCCTGATCGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9410 FBgn0033086 FBtr0086116 1 1 3 60 2R 2556768 2556786 CTCCAAACCGTAACATTGC 59 2556809 2556828 CAGGATAAGAGCAATCTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pld FBgn0033075 FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997 2 6 6 80 2R 2141752 2142360 ACATTCAGGGTTACTTGGT 58 2142404 2142422 CCTCCTTACTAGTTCCAGG 58 NA Drosophila melanogaster 50 CG1294 FBgn0033030 FBtr0086035 2 1 1 62 2R 1553223 1553244 GGTCACTCAATTTATCACTTCC 59 1553267 1553285 CTTCTTGCAATCGACTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30438 FBgn0050438 FBtr0086068,FBtr0086067,FBtr0086069,FBtr0086070 2 4 4 83 2R 1436271 1436341 GAAATATGACATGGTGGCA 57 1436388 1436406 TCAGTGCTAAGATCAGGAC 58 NA Drosophila melanogaster 50 CG40133 FBgn0058133 FBtr0111297 1 1 1 68 2R 38746 38764 AAATCTGCTAGCAACAAGG 58 46877 46895 ATCAGTATGCTTGAGTCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His-Psi:CR33802 FBgn0053802 FBtr0091806 1 1 1 60 2L 21418956 21418975 GAATTATTCCGCGTCATCTG 59 21418998 21419016 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR33987 FBgn0053987 FBtr0100032 2 1 1 64 2L 22019477 22019495 CGGAATTAACAGACCTCGA 59 22019522 22019541 GCTTTCCACGATAATTTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17715 FBgn0041004 FBtr0111244,FBtr0111245 2 2 6 61 2L 22737569 22741711 ATTATACGAGAGTCAACTGGC 59 22741732 22741752 TATTAGAAAGTCGTCCGAAGC 59 NA DesignRelaxed Drosophila melanogaster 50 Tif-IA FBgn0032988 FBtr0111122 3 1 2 171 2L 22250280 22250298 AGTTCACATACTTCCTCCG 58 22250551 22250569 TTTAGAGACTCCAATCGGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG15219 FBgn0040519 FBtr0085944 1 1 2 138 2L 22105224 22105242 AGAGTAATTGCGGACAAGG 59 22105056 22105122 TCCATTGGAGAGTAAAGCC 58 NA Drosophila melanogaster 50 His2B:CG33906 FBgn0053906 FBtr0091910 1 1 1 61 2L 21433601 21433619 AAGAACATCACCAAGACCG 59 21433558 21433576 TAGATGGCATAGCTCTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His4:CG33907 FBgn0053907 FBtr0091911 1 1 1 110 2L 21430016 21430037 GGGATTAAAGGATAGAACAGTG 58 21429927 21429945 CTTGGATGTTATCACGCAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG31988 FBgn0051988 FBtr0081490 3 1 1 132 2L 21201885 21201903 ATTACGAGGACCTCTTTGC 59 21201771 21201790 GAGGTTATAGGATTCTCGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mcm10 FBgn0032929 FBtr0081475 1 1 1 60 2L 21180260 21180280 CTGCTATCATTAAGGAACCAG 58 21180302 21180320 AGGAAGTTCTTTACCTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mpp6 FBgn0032921 FBtr0081469 2 1 1 70 2L 21157284 21157302 ACCAAGACATGGTAAAGGC 59 21157336 21157354 AAACTTCTTGCTCATGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9331 FBgn0032889 FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081419 2 4 5 135 2L 20825961 20825980 TAAAGAGACGTAAGATCCCG 58 20826078 20826641 CACTTGTCATTGTCGATGG 58 NA Drosophila melanogaster 50 pr FBgn0003141 FBtr0089396,FBtr0089395 1 2 2 84 2L 20074323 20074778 CTATACAGTTGAGATAACCGTC 57 20074260 20074278 TATAGCCTCTTTCAGCTCG 58 NA Drosophila melanogaster 50 bsh FBgn0000529 FBtr0089320,FBtr0089319 3 2 2 74 2L 19767866 19767884 CTGAATGGAGGTAGTGGTG 59 19767810 19767828 TTGAAGAAATCCGTGATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13079 FBgn0032808 FBtr0081255 3 1 1 124 2L 19560187 19560205 GACGCAAGAATGACAAAGG 59 19560293 19560895 TACGTATTTGTTACGGGCA 58 NA Drosophila melanogaster 50 CG13085 FBgn0032780 FBtr0081203 3 1 1 61 2L 19429851 19429869 GGCAGATAAGCTAAAGGCA 59 19429894 19429912 GATAGGAATCACCCGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lectin-37Db FBgn0053533 FBtr0091499 2 1 1 74 2L 19419475 19419493 TATCCATCAATGACCTCGG 58 19419531 19419549 AGTTAAGAAACGGAGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)37Cc FBgn0002031 FBtr0081164 1 1 2 179 2L 19123220 19123238 GATCTACACCATTCTCGGC 59 19122756 19122774 AGAATAAAGCCGAACTGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG17344 FBgn0032755 FBtr0081152 3 1 1 60 2L 19102534 19102552 TCTACCATCGGAATCTCCA 59 19102576 19102594 GGTGTAACCTGAGATTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Side FBgn0032741 FBtr0081141 2 1 1 213 2L 19028914 19028932 AAACCACTCATGGAGAAGC 59 19029108 19029315 TGTATTTGTTAACCGTGGGA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG10283 FBgn0032681 FBtr0081085,FBtr0081086 1 2 2 94 2L 18483894 18483914 GATCAGGACATGTTAATGAGG 58 18476903 18476986 GAAGTCATTAATCTCTTGGGAC 58 NA Drosophila melanogaster 50 RpS26 FBgn0004413 FBtr0081091 3 1 3 180 2L 18443102 18443120 AGTGCTAAATGCTAATGGC 58 18442940 18442960 GATGACGAACTTCTTGATTGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG5758 FBgn0032666 FBtr0081036,FBtr0081035,FBtr0081037 2 3 3 80 2L 18127999 18128020 GCAATCAGGTGTTCATTATCTC 59 18128061 18128143 TATCCTTGTGCATCTGGTG 59 NA Drosophila melanogaster 50 Dif FBgn0011274 FBtr0081008,FBtr0081009 3 2 2 80 2L 17417621 17417640 CTGAAACTAGTGAGACCCTC 59 17415378 17417579 GGTTAGGAGTTCTGGATTCG 59 NA Drosophila melanogaster 50 CG15140 FBgn0032631 FBtr0112773 1 1 1 60 2L 17287383 17287404 ATAATGGGAATGGTAGTAACCG 59 17287425 17287443 GTTGTTGTAGGTGTAGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ugt36Bb FBgn0040261 FBtr0080910 2 1 1 60 2L 16796937 16796957 CAACTGGAAGGACAATATGAG 58 16796976 16796997 GATTCTCGTAGATCTCTTTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fzy FBgn0001086 FBtr0080833 2 1 1 92 2L 16311771 16311789 ATATACCCACCACATCCGA 59 16311898 16311916 CTATATTGTCGGCACTCCA 58 NA DesignNoJunction Drosophila melanogaster 50 twe FBgn0002673 FBtr0080855 1 1 1 60 2L 16260759 16260779 CTAAAGACCATCTCCAGTGAC 59 16260719 16260737 ATTGTTCATCAAACTCGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(H) FBgn0004837 FBtr0080700 2 1 1 64 2L 15041941 15041959 GAGTACCAGTTCTACGAGG 58 15042045 15042063 TTAACGATTGGCACTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32971 FBgn0052971 FBtr0114463 2 1 3 126 2L 14277365 14277383 GAGTCGAGGACTTCAAGAG 59 14277533 14277552 ACATGCTTAGGACGTTATCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG16890 FBgn0028932 FBtr0080575 1 1 2 60 2L 13782669 13782687 CAACAACCCGATATAAGCC 58 13782627 13782646 CTAGATATCGCTCGAATTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31849 FBgn0051849 FBtr0080490 3 1 1 66 2L 13181646 13181664 CTATACGCTACTACGCTGC 59 13181598 13181616 CCTAAAGTGACTGTAGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12404 FBgn0032465 FBtr0080430 3 1 1 177 2L 12994233 12997475 TTAATCACCATTCAGGGCA 58 12994074 12994095 CCTAGTAAATGGTAATCAACGC 59 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090013,FBtr0090027 1 3 17 90 2L 12731059 12737970 TCTTTATGGTTCTGGCTACC 59 12738023 12738041 AAGTAGTACAGGAAGGCGA 59 NA Drosophila melanogaster 50 crol FBgn0020309 FBtr0080260,FBtr0080263,FBtr0080261 3 3 4 152 2L 11797737 11797843 TGAAACCGATCATAATTCCC 57 11797604 11797622 CCGCATTATGTGAGATGAG 58 NA Drosophila melanogaster 50 CG6750 FBgn0032292 FBtr0080122 3 1 1 85 2L 10732075 10732093 AGAACGGCAAGTATCTCAG 59 10732008 10732026 CTGAGTCTTGAAGTAGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6232 FBgn0032252 FBtr0080029 3 1 1 82 2L 10446023 10446196 GCATCAATCGTAACCTATTGAC 59 10446239 10446257 ATTGCACAGTTGATAGCGT 59 NA Drosophila melanogaster 50 Ip259 FBgn0025366 FBtr0080017 3 1 1 60 2L 10409026 10409044 ATTATCTGCTCGACAGAGG 58 10409067 10409086 TGCTTGATCATATTGGACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ip259 FBgn0025366 FBtr0080017 1 1 1 60 2L 10409025 10409044 CATTATCTGCTCGACAGAGG 59 10409066 10409085 GCTTGATCATATTGGACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GATAd FBgn0032223 FBtr0079993 1 1 1 163 2L 10334803 10335789 CTCTATTAAGGCACTGCCC 59 10335916 10336031 CATTTGGGTCTGGTCTCAG 59 NA Nonspecific Drosophila melanogaster 50 CG4957 FBgn0032205 FBtr0079985 1 1 1 80 2L 10269484 10269504 CAATGATGCTATAGAGTTGGG 58 10269545 10269626 GGACTGCATAGGAAATTGAC 58 NA Drosophila melanogaster 50 CG5734 FBgn0032191 FBtr0079960 3 1 1 61 2L 10206166 10206185 TAGAGATGCCAAGCTAACTG 59 10206124 10206142 CAACGGTCTGGTTGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15828 FBgn0032136 FBtr0079843 2 1 2 156 2L 9643296 9643402 ATAAAGTGATGCAGACCCTG 59 9643519 9643539 ATAATCTGCTGAACTCGAAGG 59 NA Drosophila melanogaster 50 Ggamma30A FBgn0028433 FBtr0079796,FBtr0079797,FBtr0079795 1 3 3 82 2L 9272595 9291061 AATCCATAGCAGAAATGCG 58 9291107 9291125 ATTGTTCTTCTTATCCGGC 57 NA Nonspecific Drosophila melanogaster 50 CG13089 FBgn0032052 FBtr0079682 3 1 1 90 2L 8516291 8516369 ATGTTGGAAATTCATGGCC 58 8516423 8516441 GATCCACAAATGCCAAAGG 59 NA Nonspecific Drosophila melanogaster 50 CG7627 FBgn0032026 FBtr0079608 3 1 1 143 2L 8359565 8359650 CTAATGTACCGTGAGATTGGA 59 8359442 8359460 CATCCGTACCCTTTCATCC 59 NA Drosophila melanogaster 50 CG7830 FBgn0032015 FBtr0079613 3 1 1 139 2L 8307252 8307273 GGTCAAATGTGGAATCATATCC 59 8307056 8307152 ACAATCATGGCATTCAGGA 59 NA Drosophila melanogaster 50 Pvr FBgn0032006 FBtr0079628,FBtr0079626 3 2 6 124 2L 8226598 8227662 TCACATTGATAAAGACGGCA 59 8226493 8226512 ATACTGATTCAACGTAGGCG 59 NA Drosophila melanogaster 50 CG31607 FBgn0051607 FBtr0079579 2 1 1 129 2L 8154040 8154166 GAAGAGGATCAGGTTATTCCT 58 8154257 8154275 CACAATGTGGATGATCTCG 58 NA Drosophila melanogaster 50 CG7227 FBgn0031970 FBtr0079551 1 1 1 92 2L 7995680 7995763 GGCAAATGGTACTGATAACC 58 7995607 7995626 CAACAGGAGGATATGTTGAG 57 NA Drosophila melanogaster 50 Snoo FBgn0085450 FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718,FBtr0112720 3 5 5 60 2L 7975303 7975321 GCACGACTATCTTCATGTG 58 7975261 7975281 GAGGATGATCTGGTATTTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 milt FBgn0022201 FBtr0079397,FBtr0079399,FBtr0079398 2 3 3 180 2L 7051637 7051769 CAGATACTGACACTCCCAC 59 7051911 7051931 TTTAGCTGAGCACTGATATCG 59 NA Drosophila melanogaster 50 Pcp FBgn0003046 FBtr0079388 3 1 1 61 2L 7022218 7022237 ATTCAGGATCATACGATCCC 58 7022261 7022279 GTGAGGTAAATGGTCTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 homer FBgn0025777 FBtr0079307,FBtr0079306,FBtr0110778 3 3 3 137 2L 6722249 6722267 ATAAACTCGACGATCACAC 57 6722075 6722148 CTTCTCTACGAACTTGGTC 57 NA Drosophila melanogaster 50 CG16947 FBgn0031816 FBtr0079271 2 1 1 81 2L 6460474 6460568 TGAGATTTGGTAAGTACACCTG 59 6460414 6460432 CCACATCCATGACAATGGT 59 NA Drosophila melanogaster 50 stai FBgn0051641 FBtr0079196,FBtr0079197 3 2 3 184 2L 6122162 6122181 TCATCAGTGACATGAAGGAG 59 6122398 6122706 GATTGTGTTATGCTCCTTTAGG 59 NA Drosophila melanogaster 50 qtc FBgn0028572 FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260 1 5 7 98 2L 5069212 5070107 CGCGTAAGACCATTTATCG 58 5070169 5070187 AGAAGATAGCGCTCTTGAG 58 NA Drosophila melanogaster 50 CG14042 FBgn0031671 FBtr0110983,FBtr0110984 2 2 2 66 2L 5038667 5038685 TATTGAGGACGTTCCACTG 58 5038715 5038733 CTGTTGGATATCCTCCTGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33003 FBgn0053003 FBtr0077434 3 1 1 93 2L 4401671 4401689 GAAGACACGTATTTACCCG 57 4401918 4401936 GTGATCATGATTGTGTCCC 58 NA DesignNoJunction Drosophila melanogaster 50 Atet FBgn0020762 FBtr0077427,FBtr0112899,FBtr0112898,FBtr0077426 2 4 4 80 2L 4343789 4343809 CATCTCAACTACTGGTACTCC 59 4343849 4343931 GGAGAAGACAATCTGAAATGG 58 NA Drosophila melanogaster 50 CG31961 FBgn0051961 FBtr0077484,FBtr0077485 2 2 2 60 2L 4187329 4187351 GACTACTTCTACCAGACTTTCAG 59 4187291 4187309 CATCCTTTAATCGCTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3964 FBgn0031574 FBtr0077501,FBtr0077502 3 2 2 112 2L 3865421 3865504 GCATCATCAAGAACACCAC 59 3865580 3865598 GAACGATCCGGGTATATGG 59 NA Drosophila melanogaster 50 CG17221 FBgn0031500 FBtr0077654 1 1 2 96 2L 3040732 3040801 TCATACTGTCTTGCTCCTG 58 3040861 3040879 TTATGTACAGTCCCGACCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG17264 FBgn0031490 FBtr0077647 2 1 1 80 2L 3019862 3019880 TATCTTCAGCATAGGTGGT 57 3019924 3019999 ACATCGTAGTACAAGTGCT 58 NA Drosophila melanogaster 50 CG17301 FBgn0031442 FBtr0077697 1 1 1 60 2L 2653363 2653381 TTCTCGGATTTCATCCTCC 58 2653405 2653423 TTAAGTCGTATCCGTTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9870 FBgn0031422 FBtr0077768 3 1 1 60 2L 2383463 2383481 CACGAGGAGATTTCTCCTG 59 2383503 2383523 TGTAATCAATATCACGGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9967 FBgn0031413 FBtr0077799,FBtr0100648 1 2 2 122 2L 2309692 2310133 TTCCTCAACGATTACAGCA 58 2309588 2309606 CTCCGGAGGATTATCATCC 58 NA Drosophila melanogaster 50 Got2 FBgn0001125 FBtr0077868,FBtr0100359,FBtr0077867 3 3 3 60 2L 1984780 1984799 CTATCTCACCAACGATGGAC 59 1984739 1984757 GTACTCGACATTCTTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31665 FBgn0051665 FBtr0089787,FBtr0089786 1 2 2 123 2L 1851262 1851698 ACCTGCTAATTGTGGTGTC 59 1851785 1851803 GAGTTGGAGTAGCACACTC 59 NA Nonspecific Drosophila melanogaster 50 c-cup FBgn0031367 FBtr0077894 3 1 1 60 2L 1831877 1831897 CGTAGGATATTTAGTCGATGC 58 1831837 1831857 TGTATGTTTGACTGGACTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 c-cup FBgn0031367 FBtr0077894 1 1 1 60 2L 1831846 1831864 TATTAGCGGTAGTCCAGTC 57 1831804 1831822 ACTCTTCTCCATTTGCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14342 FBgn0031324 FBtr0114498 1 1 1 137 2L 1204674 1204767 ATGAGGGTACACAGAACCT 59 1204927 1204945 CTTGAGAATCTCCTGCAGG 59 NA Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 3 7 8 167 2L 119224 119296 ATAATGCAGACTGATGTCCTG 59 119020 119038 TTGAGCCATGGTGTTTAGG 59 NA Drosophila melanogaster 50 su(f) FBgn0003559 FBtr0113732,FBtr0113736,FBtr0113733,FBtr0113734 2 4 5 60 XHet 78177 78197 CACACTATGTACAACAAGCTG 59 78218 78302 GAACATAGACCAATGTGGGA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG41475 FBgn0084035 FBtr0111202 1 1 1 82 X 22261274 22261292 AGCCGAAAGACAGAAACTC 59 22261336 22264652 CACAAATACAGAGTTTCGTCG 59 NA Drosophila melanogaster 50 CG14617 FBgn0031191 FBtr0100650,FBtr0077353,FBtr0100652,FBtr0100651,FBtr0077352 1 5 5 261 X 21884792 21884810 CTCTAGTTCCATGGACCCT 59 21885099 21885117 AAAGACCAGAGTCTGAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG32523 FBgn0052523 FBtr0077183 2 1 1 69 X 21089121 21089139 GAGTCATAATCTCGGCCAC 59 21089172 21089257 GGAACTACATCATTCCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32529 FBgn0052529 FBtr0100839,FBtr0074800,FBtr0074801 2 3 3 81 X 19795510 19795910 GACCGTATATGGAATATCCACC 59 19795952 19795970 ATATGAGGCCCAGTATGGA 59 NA Drosophila melanogaster 50 l(1)G0084 FBgn0026680 FBtr0074762 1 1 1 94 X 19526930 19527012 AATTCCGGAGACGAAACTG 59 19526854 19526872 GAAGAAGATCCTCTACCGC 59 NA Drosophila melanogaster 50 CG6290 FBgn0030921 FBtr0074563 3 1 1 110 X 18331607 18331625 CACAGAATCCGCTAGAGTC 59 18331699 18331717 GATTGTCAATGTCGACGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32560 FBgn0052560 FBtr0113438,FBtr0074457 1 2 2 133 X 17640916 17641005 GTCATGTCCACCATAGATCTC 59 17641100 17641118 GATCCGCATGAGTAGTACC 59 NA Drosophila melanogaster 50 CG8211 FBgn0030858 FBtr0074480 2 1 1 187 X 17547784 17547868 ATGGAGGTGCTAAGTTGTC 59 17547615 17547633 CTTAGGTCCTCCCAAATCG 59 NA Drosophila melanogaster 50 nonA FBgn0004227 FBtr0074232 1 1 3 75 X 16259644 16259662 TGATTGGAAACAATGCTGC 59 16260959 16260980 CCTTGGTTCATATTGTTAACCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9065 FBgn0030610 FBtr0073966 2 1 1 70 X 14978593 14978674 AAATATCCGTCTCGAACCG 59 14978541 14978559 AACTCCTTGAGATGCACTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11068 FBgn0030536 FBtr0073854 2 1 1 84 X 13849692 13849779 GTGAGCTATACGATTCGCA 59 13849827 13849845 CTCTCCTTCTGGAATGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Yippee FBgn0026749 FBtr0073789,FBtr0100168 2 2 2 60 X 13280865 13280883 GTCAATTGATCAGTACCCG 57 13280757 13280775 ACACGCTTAAACAGATAGG 57 NA DesignNoJunction Drosophila melanogaster 50 Tim9a FBgn0030480 FBtr0073775 3 1 1 124 X 13279589 13279607 CATACGCGACTTTACAACG 59 13279760 13279778 CAATAACCTGGAACTCCTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG12096 FBgn0030457 FBtr0073727 2 1 1 60 X 13054606 13054624 GTAATGGAGCTCCTAGTGC 59 13054648 13054666 GACGTTCCATGTAGGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12717 FBgn0030420 FBtr0073704 1 1 1 60 X 12657050 12657069 CCATCAGTGATAACATTGCC 58 12657009 12657028 TGCACCTTCCTATAGAACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17788 FBgn0030392 FBtr0073648 2 1 1 227 X 12358358 12358376 ATAATGGTTCGCTTGTGGT 59 12358567 12358585 ATTTATCGCTCAGATCGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34408 FBgn0085437 FBtr0114584,FBtr0114585,FBtr0071439,FBtr0112675 3 4 4 87 X 10121982 10122065 CAGTGACTCTGCTCATACG 59 10122115 10122134 TTAATCCCAGACTTACTGCG 59 NA Drosophila melanogaster 50 CG32706 FBgn0052706 FBtr0071287 3 1 1 290 X 8981291 8981309 GACTAAGCTAGGCGAAGTG 59 8981563 8981654 GTCTTGAAACTTGACAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 oc FBgn0004102 FBtr0089650,FBtr0100341 1 2 2 81 X 8527989 8534404 TCTAGAGTACAGGTGTGGT 58 8527926 8527944 TCAAGCTATTCGACTGCTG 59 NA Drosophila melanogaster 50 CG15345 FBgn0040928 FBtr0071176 2 1 1 60 X 8291784 8291802 GGAACAGAAAGAGATGCAG 58 8291742 8291763 CAGTCTCATGGTTTGAATTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6978 FBgn0029727 FBtr0070715 2 1 1 60 X 4678541 4678560 GCTTCTTCTATGGCTATGTG 58 4678581 4678601 CCGTAGTATTTGATCATCAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13021 FBgn0029669 FBtr0070570 2 1 3 88 X 3408477 3409288 TACTGTGGAAACTTGGTGTC 59 3409339 3409357 GCAACTTTAGGCAGAAGTG 59 NA InUTR Drosophila melanogaster 50 CG14624 FBgn0040357 FBtr0070204 3 1 1 74 X 1100983 1101002 CTTCACTACCTTCTCTGACG 59 1101039 1101057 GAACTGGAGGAAAGGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13373 FBgn0029522 FBtr0112947,FBtr0070076 3 2 2 194 X 371748 371766 AGCAGTACTATCTGCTTGG 58 371924 371942 AAATGAACCTGGAGCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bt FBgn0005666 FBtr0089792,FBtr0089791,FBtr0089794,FBtr0089793 1 4 4 80 4 763161 763417 TACTCTGTTGTGGAAGACTC 58 763458 763478 CTTGTAGAACTTGAACGTAGG 58 NA Drosophila melanogaster 50 dpr7 FBgn0053481 FBtr0089142 2 1 3 141 4 272055 272073 GTAATACATCCACCAGGCA 59 270861 271951 CGTTGTCAGCTATTACTTGC 59 NA Drosophila melanogaster 50 Sry-beta FBgn0003511 FBtr0085556 3 1 1 80 3R 25865600 25865671 GATAGAAGGCTGCATTGTG 58 25865714 25865733 CGCTGGTTTATGATCTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18110 FBgn0039677 FBtr0085449 3 1 1 82 3R 25496357 25496375 GATGTGTACTTCCAGGAGG 59 25496418 25496497 CCATAGGAAACCATTAAGTCGA 59 NA Drosophila melanogaster 50 CG11876 FBgn0039635 FBtr0085369,FBtr0085366 3 2 4 90 3R 24941220 24941299 CAAGAAGGGTATTGAGGCT 58 24941353 24941371 GTGGGTCTTTCGTACAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 Mlc1 FBgn0002772 FBtr0085196 3 1 2 85 3R 23484199 23484220 AGGATGATGAAGGATTTATCCC 59 23483669 23483799 CGAGGAATGTGTTTAGTCGA 59 NA InUTR Drosophila melanogaster 50 CG11909 FBgn0039330 FBtr0084847 3 1 1 70 3R 21170885 21170903 GTGAACCTGTGAATGTTCC 58 21170776 21170852 CTCATCATAGATAGACTGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10845 FBgn0039246 FBtr0084713 2 1 1 60 3R 20728136 20728154 AAGTTCCAGGAAATGTGGG 59 20728175 20728196 GCTGTCTTTGCTCATTATACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31128 FBgn0051128 FBtr0084638 2 1 1 91 3R 20295414 20295486 CAAGTACAACGTTACGGGT 59 20295541 20295559 TTTGGTAGTAGATTCCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Golgin84 FBgn0039188 FBtr0084629 2 1 1 60 3R 20182201 20182274 GCACAGATGATGTCAAAGC 59 20182159 20182179 CGATTATCGAATGGACTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gdh FBgn0001098 FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498 2 4 4 97 3R 19763339 19763461 AAGCTAAGATCATTGCCGA 59 19763260 19763278 GTACAGATCGGGAATGACC 59 NA Drosophila melanogaster 50 nau FBgn0002922 FBtr0084472 1 1 1 86 3R 19542152 19542234 GATCTGCTACAGGAATCCAG 59 19542085 19542103 CAGATAATCGGACTGGCAG 59 NA Drosophila melanogaster 50 CG13827 FBgn0039068 FBtr0084376 3 1 1 225 3R 19085753 19085831 AACCTCATGAGGACAATGC 59 19086079 19086097 ATAAGGTGCCAATAGCACC 59 NA DesignRelaxed Drosophila melanogaster 50 CG31139 FBgn0051139 FBtr0084321 3 1 1 98 3R 18574670 18574688 TAGTTGGAGCCCTAATCCT 59 18574535 18574609 AGTCGTAGCTGGTATTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31465 FBgn0051465 FBtr0084147 1 1 1 280 3R 17708594 17708670 CATACCATCAGCAAGTCAG 57 17708971 17708989 CTTGAGATTCCCAGGATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5849 FBgn0038897 FBtr0084125 3 1 1 80 3R 17568381 17568477 GAGAAATATCGTTATAGCGTGG 58 17568518 17568536 AAAGTACTCGTCATCCTGG 58 NA Drosophila melanogaster 50 CG10830 FBgn0038839 FBtr0083986 3 1 1 287 3R 16722461 16722479 TTAAGTTCCGGAAGCTGTC 59 16722192 16722210 ACTCATTGTAGTGGTTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arc42 FBgn0038742 FBtr0083817 1 1 1 172 3R 15703862 15703880 ATCCAGAGAAACAGATCCG 58 15704084 15704102 ATACAGGGAGTTGTTCACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5217 FBgn0038694 FBtr0083741 2 1 1 60 3R 15073533 15073554 ACTATAAGTCGCTTCTTTACCC 59 15073383 15073513 TCGAAGGATCTTGAACATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gatA FBgn0086360 FBtr0083718 3 1 1 299 3R 14852918 14853847 CTTTGTTATGCAGCAATTGG 58 14852638 14852656 TATTCCTATGCGCACAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14299 FBgn0038651 FBtr0083681,FBtr0100423 1 2 2 80 3R 14583736 14583754 GTTACACGCACTTTCAGTG 59 14583620 14583692 ATCCACCTGTATCACATCG 58 NA Drosophila melanogaster 50 CG4053 FBgn0038482 FBtr0083416 2 1 1 60 3R 12957564 12957582 ACAGACCTTATTTCCGGAC 58 12957522 12957541 GTAGACATAGGGTATGTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31265 FBgn0051265 FBtr0083402 3 1 1 61 3R 12954019 12954037 AATCCCTGTGAATCAAAGC 57 12954062 12954080 TTTATCCTGCCAGATTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10317 FBgn0038423 FBtr0083319 2 1 1 151 3R 12195651 12195727 AAATGAGAGTATCCTCCGA 57 12195339 12195357 CCACTATGTCTATCTCGCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG6136 FBgn0038332 FBtr0083108 3 1 1 93 3R 11197501 11197519 CCAACCACGATATCAAGCT 59 11197426 11197444 GAACACAGTTCAATGCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3631 FBgn0038268 FBtr0082997,FBtr0114533 3 2 2 188 3R 10707240 10707321 CGATATGACCTATTGCAAATCG 59 10707470 10707488 TCCAAGTGATCCTTGTTCG 59 NA Drosophila melanogaster 50 put FBgn0003169 FBtr0082977 1 1 1 81 3R 10447046 10447064 GAAGTTCAGGAGAGTGTGG 59 10446923 10447002 ATACATTAAGTCCCGGATGG 58 NA Drosophila melanogaster 50 DDB1 FBgn0027049 FBtr0082709 3 1 1 83 3R 8881937 8881958 TCGATGGAGATCTAATTGAGAG 58 8882002 8882082 TCAGTGTCAACTCCAATCC 59 NA Drosophila melanogaster 50 CG6225 FBgn0038072 FBtr0082649,FBtr0113225 2 2 2 81 3R 8484654 8484732 ACTCCTGTGATTAAGTCATACG 59 8484773 8484792 TGCCCAGACTAATCTTTGAG 59 NA Drosophila melanogaster 50 CG14712 FBgn0037924 FBtr0082418 3 1 1 119 3R 7455335 7455353 GAGAATCGACCCATATTGC 58 7455436 7455517 CTGTTGCGTATCTTCAGTG 58 NA Drosophila melanogaster 50 CG4706 FBgn0037862 FBtr0082336 1 1 1 60 3R 6965226 6965244 GAACCACACCCTTAATGAG 57 6965268 6965286 TAGATTCAAGGCACTTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Art1 FBgn0037834 FBtr0082304 1 1 1 80 3R 6613242 6613261 ATTGAGGAGATTGAGCTTCC 59 6613094 6613199 GTAGAACAGGCAGTAACCC 59 NA Drosophila melanogaster 50 CG31373 FBgn0051373 FBtr0082318 3 1 1 110 3R 6534604 6534779 CCGTCTTCATTAATCCGGA 59 6534512 6534530 CCTTATCGTACCGTTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nerfin-2 FBgn0041105 FBtr0082177 2 1 1 124 3R 5898513 5898531 GAAACGAGTTGTGGAAACG 59 5898618 5898768 TCTTTAGGTAAGCTTGACGT 58 NA Drosophila melanogaster 50 CG16905 FBgn0037762 FBtr0082144 2 1 1 176 3R 5639946 5639965 AATCCATGGATAACCATGGG 59 5640104 5640187 AAACAGGAAGTGAACTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pnn FBgn0037737 FBtr0082126,FBtr0113210 2 2 2 60 3R 5567628 5567646 ACGATACTGCAATAGACGA 58 5567670 5567688 TTATCCAACTGCTCTTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1979 FBgn0026563 FBtr0081628 3 1 1 107 3R 2883432 2883450 ATGAAACGGTTGAAGAAGC 58 2883520 2884145 TATAGAGAACGAGAGCTGAC 58 NA Drosophila melanogaster 50 CG18048 FBgn0037435 FBtr0081712 1 1 1 60 3R 2172356 2172374 GACAAGCACATCAATTCCA 58 2172398 2172416 CCTCCTTTAGGGATTCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14669 FBgn0037326 FBtr0078679 2 1 1 172 3R 1280551 1280571 TCAGATCTTGGACAGTTTCAG 59 1281084 1281183 TGTAGTTATATTGCGCCGA 58 NA InUTR Drosophila melanogaster 50 UbcD6 FBgn0004436 FBtr0078849 1 1 1 85 3R 776242 776263 GGAATATGCTTGGACATATTGC 59 776116 776196 CTCAGCAGTGACTGTATGG 59 NA Drosophila melanogaster 50 Karybeta3 FBgn0011341 FBtr0078860 3 1 1 141 3R 476444 476527 TTTCTACAAAGGGCTTCCAG 59 476631 476649 CTCGTCGATCAGATTCCTG 59 NA Drosophila melanogaster 50 CG41465 FBgn0084026 FBtr0111215 3 1 1 61 3R 287887 287907 CCTATCGGTATATTGGGAGTC 58 287930 287948 TTGTATGCTGTTTGAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14568 FBgn0037124 FBtr0078455 3 1 1 65 3L 21726281 21726299 CTGATCTTACCTACGGACC 58 21726234 21726252 CGTAAGTGTTATCGGGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14574 FBgn0037104 FBtr0078467 2 1 1 98 3L 21574302 21574321 TCGTGTACCGAGAATTATGG 59 21574223 21574241 AGGAGTAACAGAAGATGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11309 FBgn0037070 FBtr0078407 2 1 2 84 3L 21296636 21296913 AAATACTTCGCCGAGATCAG 59 21296571 21296589 AAATTGGTTGGACGTTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 fbl FBgn0011205 FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188,FBtr0078190 1 5 5 105 3L 20383913 20383991 GAAGATCGATAGGGTCGTC 59 20384060 20384078 CTTCATTGTGCCATTGGAC 59 NA Nonspecific Drosophila melanogaster 50 schuy FBgn0036925 FBtr0074899 3 1 1 201 3L 19979619 19979637 CGAATAGACCTTCGTTCGT 59 19979802 19979883 CCTTTCTGGTTGCTATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9231 FBgn0036887 FBtr0074972 3 1 1 103 3L 19578769 19578852 TTAGTCAGGATGTCATGGAG 58 19578685 19578703 ACTGTACACCATAATGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14585 FBgn0036757 FBtr0075166 1 1 1 80 3L 17809300 17809432 CTACCTAAATACCCAGAATCCT 58 17809241 17809259 ACATAGCCAGGATTATCCC 58 NA Drosophila melanogaster 50 CG32182 FBgn0052182 FBtr0075188 2 1 1 60 3L 17751508 17751526 GAGCTGGCTCAAATATTGG 58 17751550 17751568 CTGGCAGGTTAATTAACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7460 FBgn0036749 FBtr0075187 3 1 1 60 3L 17734567 17734585 AAACTACTCATGAAAGCGC 58 17734608 17734627 CATGATCCTTGAGGATACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13025 FBgn0036660 FBtr0075346 2 1 1 65 3L 16771352 16771372 GTTTATATCTACGACTTGCGG 58 16771246 16771325 TAAGTTCACTTCGGCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34248 FBgn0085277 FBtr0112442 1 1 1 117 3L 16263663 16263681 ATCCTTTGTTCTACCCAGC 59 16263564 16263582 TCCTTTGACCACCTTATGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG34246 FBgn0085275 FBtr0112440 3 1 1 163 3L 16226578 16226596 TAAACTGCTCAGCTTTCCC 59 16226781 16226801 TATATGCCTTGTTGATGAGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11279 FBgn0036342 FBtr0075887 3 1 1 82 3L 13040388 13040406 TCCGTTATTTCGAAGTCGG 59 13040452 13040470 TTGCTCAACTGGATGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11253 FBgn0036338 FBtr0075894 3 1 1 152 3L 13018154 13018172 GGATGATCTCAAGATGGGC 59 13017963 13018038 TCCTTGAGCTGACAATCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32115 FBgn0052115 FBtr0075904 3 1 1 60 3L 12906181 12906199 GAAACGTAACAGCAAACCA 58 12906079 12906158 GTTACGTATTTCACGACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4069 FBgn0036301 FBtr0075965 1 1 1 187 3L 12529999 12530017 AGGAGCTCATCATGTTTGG 59 12529772 12529849 ACCAAACATCCAGAGTTCTC 59 NA Drosophila melanogaster 50 CG32094 FBgn0052094 FBtr0076081 3 1 1 83 3L 11806613 11806631 AACACTCCAGGAAGTTACC 58 11806485 11806504 GAACAGACAAGTGTTGTGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6272 FBgn0036126 FBtr0076234 3 1 1 72 3L 11090964 11091109 AAACAATGAGGCTGTTCAG 58 11090910 11090928 ATCGATGCGTTTCTTACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33926 FBgn0053926 FBtr0091930 1 1 1 60 3L 9436464 9438821 GAGGACGAATCCTATGAACTG 59 9438843 9438861 TGTCAGTGATCTCCATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsp67Ba FBgn0001227 FBtr0076495 1 1 1 60 3L 9372502 9372520 TACTAGATTTGGCCGAGGA 59 9372460 9372480 TCATCTATATCCATTGCCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6745 FBgn0035901 FBtr0076620 1 1 1 87 3L 8504066 8504084 GATTACGTGACCTTCCTGG 59 8504135 8504212 ATGGTCGTAAGTTCAGTCG 59 NA Drosophila melanogaster 50 CG7201 FBgn0035865 FBtr0076716 2 1 1 151 3L 8284613 8284631 TCTGGATTACGGATGATGG 58 8284412 8284498 TTTGTCGAAGTCAATGGTG 58 NA Drosophila melanogaster 50 mus312 FBgn0002909 FBtr0110926,FBtr0076840,FBtr0076839 2 3 3 82 3L 7323267 7323287 GATGAAGAGAAGTCCACTGAG 59 7323328 7323408 GATTTATAATCTTCCTTGGCGG 59 NA Drosophila melanogaster 50 CG9948 FBgn0035721 FBtr0076896 1 1 1 60 3L 6949379 6949397 AATTGATCTGGTGGAACCC 59 6949421 6949439 ATCGTAGTTCGAGAGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SP1173 FBgn0035710 FBtr0076960,FBtr0076959,FBtr0076958 1 3 4 87 3L 6685394 6685479 AATAACCGGTCTTACAGCT 58 6685325 6685343 AGTAATGGTCCGGTATTCC 58 NA Drosophila melanogaster 50 CG6619 FBgn0035676 FBtr0077049 1 1 1 138 3L 6072341 6072359 GGATGAGAATGGTAGTGCT 58 6072521 6072539 TCCAATAACTCACGCTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 PGRP-LD FBgn0035635 FBtr0091711,FBtr0091710,FBtr0091709,FBtr0114577 1 4 4 107 3L 5775936 5776021 TGCATAAGCTGGAAAGGTC 59 5776092 5776110 GATACTGGCTCCGATAGTG 59 NA Nonspecific Drosophila melanogaster 50 CG12493 FBgn0035571 FBtr0073363 2 1 1 60 3L 4753579 4753598 ATGAAGGACCTATTGATCGT 58 4753365 4753556 AGTCATCTGACATACCTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13716 FBgn0035563 FBtr0073319 1 1 1 60 3L 4634570 4634589 GAATATACGGCAGTGTAGCT 59 4634529 4634547 CTTGAATAGCGTCTCCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32245 FBgn0052245 FBtr0073313,FBtr0073311,FBtr0073312 2 3 3 101 3L 4586691 4586709 CTACTGGCACAGACTACTC 58 4586774 4588077 GAGTTGAACCTGCATTGTG 59 NA Drosophila melanogaster 50 CG33514 FBgn0053514 FBtr0091456 2 1 1 61 3L 4365741 4365760 GGACTATTTCCGAGTTACCA 58 4365784 4365861 CACCCGTTTGATGAATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF5B FBgn0026259 FBtr0073144 1 1 1 82 3L 3447717 3457228 CATCTAAGATTCCTTACTCTGC 58 3447656 3447674 GTGTTCCAACATTGTGGAG 58 NA Drosophila melanogaster 50 CG9977 FBgn0035371 FBtr0073016 2 1 1 141 3L 2770144 2770162 CAAGGAATCCATCCTGGAC 59 2769957 2769975 TGTGATGTACACAATGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG1244 FBgn0035357 FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933 1 6 6 88 3L 2640260 2640344 CACAAAGTGAAGATTCACCC 59 2640395 2640413 CCCTGATCCGTAAAGAACC 59 NA Drosophila melanogaster 50 CG16985 FBgn0035355 FBtr0072929 3 1 1 141 3L 2599820 2599903 CTTATGTCGAAAGGATCCCA 59 2600007 2600025 GAATGCAGTCCAAATAGGC 58 NA Drosophila melanogaster 50 CG13923 FBgn0035277 FBtr0072783 2 1 1 129 3L 1803451 1803469 TCTACAACTTCGAGTTCCG 59 1803562 1805022 CCGACATCGTAGACTTGAC 59 NA Drosophila melanogaster 50 Bro FBgn0013755 FBtr0072760 2 1 1 61 3L 1648373 1648391 GAGTTCGATGAACAACGAG 58 1648416 1648434 TAGCTTTGAATCTGCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Reg-2 FBgn0016715 FBtr0072561 2 1 1 90 3L 606262 606280 AGATGAACCGCGATTATCC 59 605725 606208 AAAGTTCCTGCTATCAGCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG13877 FBgn0035112 FBtr0072495 1 1 1 78 3L 218188 218293 CATATGCACTCTTGTGGTG 58 218335 218353 CTGAGACTTAGGATGCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slik FBgn0035001 FBtr0072365,FBtr0072363,FBtr0100470,FBtr0072364,FBtr0072366 1 5 5 80 2R 20287854 20287939 TTAGTCAAAGATCCGCAGG 59 20287792 20287810 CTTGGCATCCAGATTTCTG 58 NA Drosophila melanogaster 50 nord FBgn0050418 FBtr0072263 3 1 1 94 2R 20141443 20141461 CACGACAGTCTTCAATGTG 58 20141519 20141597 CTATGATGCAGTAGCTCAG 57 NA DesignRelaxed Drosophila melanogaster 50 CG2970 FBgn0034936 FBtr0072145 3 1 1 151 2R 19837691 19837771 ATCCGTGATATTCGACTGC 59 19837886 19837904 AGAATCCTAGACTTCCGCT 59 NA Drosophila melanogaster 50 ytr FBgn0021895 FBtr0072234 2 1 1 87 2R 19736114 19736132 AAGACAATGGGATTCTGCA 59 19736045 19736063 GCTTGAGGATTACATGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pal FBgn0020623 FBtr0089502,FBtr0089501,FBtr0089500 3 3 3 161 2R 19576610 19576628 GGGAATTACTGGATCACGG 59 19576820 19576900 GATGAAGAACTCTCCGGTG 59 NA Drosophila melanogaster 50 Rrp4 FBgn0034879 FBtr0072111 1 1 1 183 2R 19443135 19443216 AGAACATCTTTGAGGAGGG 58 19442970 19442988 GGCGATATCCAGATGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bw FBgn0000241 FBtr0072117 3 1 2 213 2R 19417051 19417128 AAGTTCTTTACAGACCTGGG 59 19416790 19416875 TCTTGAAGTTCTGGACGTG 59 NA DesignRelaxed Drosophila melanogaster 50 yip3 FBgn0040063 FBtr0072050,FBtr0072051 3 2 2 63 2R 19132122 19132191 ATAGATGACCGCATTTACTG 57 19132078 19132096 CTTCCAGAACTATGTTCCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG13532 FBgn0034788 FBtr0071899 1 1 1 107 2R 18760892 18760988 TCTGTCATGTTTGACACCC 59 18761059 18761077 TTGATCTCTAGGAATGCGG 58 NA Drosophila melanogaster 50 CG30271 FBgn0050271 FBtr0113366 3 1 2 106 2R 18705171 18705190 ATTCCAGGGACTCTATTACC 57 18706463 18706936 CCGAGAAATCTTCGTTGTC 58 NA Drosophila melanogaster 50 wrapper FBgn0025878 FBtr0071821 3 1 1 102 2R 18269324 18269342 CTCAAGTTCCGACAGATCC 59 18269406 18269490 TATAGATGAGTCCGTTTGTGG 59 NA Drosophila melanogaster 50 CG3264 FBgn0034712 FBtr0071781 1 1 1 126 2R 18096996 18097075 CATTGAAGGTGGTCTAATTGAC 59 18096891 18096909 TAAAGTGTCCTCGATGTCC 58 NA Drosophila melanogaster 50 MED16 FBgn0034707 FBtr0071770 2 1 1 60 2R 18071077 18071096 CAATTAACCTATGGGTGCTG 58 18071118 18071137 GCTTCTATAATGTCCTCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30393 FBgn0050393 FBtr0071620 3 1 1 60 2R 17154761 17154779 AACGTTACAGGATCAACAC 57 17154719 17154737 ATCTCATAGATCTGCGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4266 FBgn0034598 FBtr0071629,FBtr0113100 1 2 2 80 2R 17054332 17054406 AACGTAATGAAGGGAAATGC 58 17054271 17054289 CTTGTTAAGGTCCATGCTG 58 NA Drosophila melanogaster 50 CG10543 FBgn0034570 FBtr0071524,FBtr0071523,FBtr0071525 1 3 3 137 2R 16891581 16891599 CTGCAACTATTGCGATCAG 58 16891757 16891841 CTACCCATATCTTCTTCGCT 58 NA Drosophila melanogaster 50 IM4 FBgn0040653 FBtr0071559 3 1 1 127 2R 16756745 16756763 CATGAAGTTCTTCCAAGCC 58 16756577 16756596 AACCAGTACGAATGTACTGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13871 FBgn0034502 FBtr0086282 3 1 1 60 2R 16205834 16205853 TTGGAACTGCTAAGTCACTC 59 16205873 16205894 CTTTCTCTTTAACGTGGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16926 FBgn0040732 FBtr0086499 1 1 1 220 2R 15388351 15388438 AAGTGTTGTTAAGATGGCC 57 15388073 15388092 AATAGCGATTGTACAATCCC 57 NA DesignNoJunction Drosophila melanogaster 50 Gbp FBgn0013969 FBtr0086723 2 1 1 152 2R 14335105 14336983 ATGTCAGGGTTTACCTGTG 59 14334971 14334989 CTTATTCGATGGCGTAGAG 57 NA DesignNoJunction Drosophila melanogaster 50 Hsf FBgn0001222 FBtr0110964,FBtr0086782,FBtr0110966,FBtr0110965 3 4 4 236 2R 14020428 14020510 GTATGGATTCCACAAGATCAC 58 14020212 14020230 GAATCCAGATTGTCCTGAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG14488 FBgn0034278 FBtr0089558 2 1 1 60 2R 13654876 13654896 ATCCACTTTACTGCACTACTG 59 13654836 13654854 GTCTTGGTGAAATCTCCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mbl FBgn0053197 FBtr0086992 1 1 4 80 2R 13239798 13246817 CGACAGATTAGAGACCTCAC 59 13246860 13246878 TTGATGTTGTTCAGCTGGT 59 NA Drosophila melanogaster 50 sli FBgn0003425 FBtr0087303,FBtr0087304,FBtr0112832,FBtr0087302,FBtr0112831 1 5 5 80 2R 11772898 11772918 GCTGGACAATAACCAAATCAC 59 11772064 11772857 TTGTTCAGCGTGAGTATCTC 59 NA Drosophila melanogaster 50 l(2)k05713 FBgn0022160 FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309 3 4 4 112 2R 11745506 11745703 TACCTTCAGATGATGTCGG 58 11745412 11745430 CTGATCTGCTTCAGATTGG 57 NA Drosophila melanogaster 50 CG8160 FBgn0034011 FBtr0087389 2 1 1 62 2R 11215172 11215190 AATCGGGCCAGTTATATGC 59 11215128 11215147 ATTCTCCCTGTACAAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10200 FBgn0033968 FBtr0087445,FBtr0087444 2 2 2 115 2R 10696983 10697001 ATTCTGGCTCCTCTTACAC 58 10697140 10697160 GTAGGTGGGATAATAGTTGTC 57 NA DesignNoJunction Drosophila melanogaster 50 LamC FBgn0010397 FBtr0087512 3 1 1 202 2R 10459776 10459794 GCTACAGAATCTGGAGGAC 59 10459522 10459540 TTTCGAGATCCAACGACAC 59 NA DesignNoJunction Drosophila melanogaster 50 Arc1 FBgn0033926 FBtr0087560 1 1 1 73 2R 10247478 10247499 GACATACAAGGATGTAGAAGGT 59 10247426 10247444 CCATACCGTAGAACAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18324 FBgn0033905 FBtr0087523 2 1 2 80 2R 10057018 10057085 CTTCTACATGATAAAGGCCCA 59 10057127 10057145 ATCGAAGTATGCTTGTGCT 59 NA Drosophila melanogaster 50 mam FBgn0002643 FBtr0087598 2 1 3 170 2R 9925841 9925862 ACTCTTAATGTCCGAACTACTC 59 9926279 9926297 TTATTAGGCAACTTGTGCG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Aats-phe FBgn0020766 FBtr0087594 1 1 1 82 2R 9857094 9857181 ATATGGTGGAGCAGATCAG 58 9857227 9857245 ATAAACAATGCGGAAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cnn FBgn0013765 FBtr0100656,FBtr0087705,FBtr0087704,FBtr0100654,FBtr0087703 3 5 5 84 2R 9327821 9327904 GTCAGAGGAATCTACATCACC 59 9327757 9327775 AAGATCTACCTTGGCACAG 58 NA Drosophila melanogaster 50 CG17048 FBgn0033828 FBtr0087721 1 1 1 116 2R 9241633 9241651 GTTTAGCACTGTACAGGGA 58 9241385 9241553 ATAGACGCCAGTTATCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4676 FBgn0033815 FBtr0087743 2 1 1 61 2R 9123702 9123721 CATCTTCAACATCACATCCA 57 9123745 9123815 CCTTGCGGATACTAGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13148 FBgn0033767 FBtr0087848,FBtr0087847 3 2 2 283 2R 8574581 8575119 GAACCCTATCAAATAAGTGACG 58 8575421 8575439 TTATGCCACTTCTTCTGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG8816 FBgn0033754 FBtr0087891 2 1 1 69 2R 8456895 8456968 AAGCTGATGGATCACTTGG 59 8456844 8456863 AATCACAGCCATGATACTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8888 FBgn0033679 FBtr0088022 2 1 1 90 2R 7954204 7964576 CTTCTATCACTTCGTCAAGGT 59 7954134 7954152 TTTCTTGGCCAAGTACCAG 59 NA DesignNoJunction Drosophila melanogaster 50 tou FBgn0033636 FBtr0088094,FBtr0088092,FBtr0113066,FBtr0088091,FBtr0088093 3 5 5 180 2R 7467665 7467748 GAAATGGAGCTTCATGAGGA 59 7467439 7467457 TATCGAAGATCTGACGCAC 59 NA Drosophila melanogaster 50 CG30022 FBgn0050022 FBtr0088147 3 1 1 142 2R 7275163 7275181 TACTCTCCTGATACGAGGC 59 7274985 7275060 CCATTTGACCTTTATAGTCGTG 59 NA Drosophila melanogaster 50 CG13217 FBgn0033590 FBtr0088194 2 1 1 246 2R 7124006 7124024 GACACTCTTGGAATTGGAG 57 7123778 7123796 GAACTTCTTGCCGAATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12744 FBgn0033459 FBtr0088378 2 1 2 80 2R 5763454 5763530 TTCTTCAATCCGAATCTCTGG 59 5763572 5763590 CCTTCGCAAGACATATCCT 59 NA InUTR Drosophila melanogaster 50 CG30357 FBgn0050357 FBtr0088721 1 1 1 60 2R 4608893 4608911 AATAAGGATGTCGAAGCGG 59 4608851 4608872 TTAGCTCATCATTCATCTCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vps25 FBgn0022027 FBtr0088694 1 1 1 61 2R 4513072 4513142 CTTCTTTACACTACAGCCC 57 4513167 4513185 GATCTGTCCAGACCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scra FBgn0004243 FBtr0100216,FBtr0088911,FBtr0088912 3 3 3 151 2R 3479240 3479258 AACCAGAAGGATCCTTGTG 59 3479372 3479455 GCAGCTAAATGTTGTTTCAC 58 NA Nonspecific Drosophila melanogaster 50 didum FBgn0015933 FBtr0089745,FBtr0089744,FBtr0089743 2 3 3 89 2R 3393451 3393469 GAAAGTCTACAGATGCGTG 58 3393522 3393597 CTCAGACTCCAATTGACGA 59 NA Drosophila melanogaster 50 CG9422 FBgn0033092 FBtr0086120,FBtr0086121 1 2 2 72 2R 2579672 2579690 TAGTCACACGCCAAATACC 59 2579725 2579800 AAGCCATCTATAGTATCCGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17018 FBgn0039972 FBtr0085958,FBtr0085957,FBtr0085956 3 3 3 80 2L 22365254 22365275 TCAGTTATACTCGAGATTCCTC 58 22365314 22365386 ATGGGACATCCTTTAGAAGTC 59 NA Drosophila melanogaster 50 Nhe2 FBgn0040297 FBtr0081467,FBtr0081466 3 2 2 84 2L 21121226 21121590 AGATCTTAAGGGAGCTGAG 57 21121638 21121656 ATTTCGCCTCATAACTTCC 57 NA Drosophila melanogaster 50 CG2611 FBgn0032871 FBtr0081387 3 1 1 70 2L 20650645 20650663 AGCTACTATGTGTACGTGC 59 20650697 20650715 CTTCGTATCTCGTCCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40174 FBgn0058174 FBtr0100564 1 1 1 77 2L 20257978 20258100 GATTTCGCCATCGTTTGTC 59 20257919 20257937 GTGGTTACGAGTAGAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)37Cc FBgn0002031 FBtr0081164 2 1 2 180 2L 19123220 19123238 GATCTACACCATTCTCGGC 59 19122755 19122773 CAGAATAAAGCCGAACTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13258 FBgn0032582 FBtr0080853 3 1 1 78 2L 16292714 16292962 CAGAATTGTGCTCTTAGCTG 58 16292655 16292673 GATCTTCACCCAATCCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or35a FBgn0028946 FBtr0080781 1 1 1 80 2L 15622531 15622550 ATTTGGTTTGGTGCTAAGAC 58 15622417 15622489 GAGGGAATCCGTAGTAAAGG 59 NA Drosophila melanogaster 50 mRpS23 FBgn0051842 FBtr0080566 3 1 1 127 2L 13834816 13834835 CATTTGGTACGATGTGTACG 59 13834647 13834726 CTTTATGCAGCTTTGCTCG 59 NA Nonspecific Drosophila melanogaster 50 b FBgn0000153 FBtr0080542 1 1 1 110 2L 13822960 13822978 GTACAACATGTGGATGCAC 59 13823116 13823134 TTCCAAGTGACCGAATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6523 FBgn0032509 FBtr0080465 3 1 1 298 2L 13366730 13366812 TGAAACATCAGATCGAGGC 59 13367136 13367155 GATGTCAAATGTCTCGTACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG16800 FBgn0032462 FBtr0080417 3 1 1 257 2L 12966898 12967107 GGAGCAGGAAGAAGATCAG 59 12967328 12967346 TTCTTGTGATGAGACTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cmet FBgn0040232 FBtr0080215 3 1 1 114 2L 11266548 11266890 AAAGGAGCGTTATGATGCT 59 11266452 11266472 AGTCTGCTTTAGAGTACTCAG 58 NA Drosophila melanogaster 50 pim FBgn0003087 FBtr0080001 3 1 1 138 2L 10363435 10363453 GCCTACGTATTGAATTGCG 59 10363618 10363636 ATAGTCCTTCATAGCCCTC 57 NA DesignNoJunction Drosophila melanogaster 50 nmd FBgn0005322 FBtr0080065 3 1 1 109 2L 10303738 10303759 CTCGCTGATCACATATTATTCG 59 10303594 10303668 CTAGCCTCTTAAGCTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp4e3 FBgn0015035 FBtr0079925 3 1 1 88 2L 9748778 9748797 TTATGTTTGAAGGACACGAC 58 9748652 9748727 CAATTTCCTCTGGACATCG 58 NA Drosophila melanogaster 50 CG15828 FBgn0032136 FBtr0079844,FBtr0079843 2 2 2 80 2L 9654120 9654202 CTCGAAACAGATCACATAAGC 59 9654243 9654262 ACGATGGATGTTCACATCTC 59 NA Drosophila melanogaster 50 CG13110 FBgn0032111 FBtr0079805 3 1 1 60 2L 9350625 9350643 TAAGCCTGGACTGAAAGTG 59 9350664 9350685 CAAGTAGAACCTATCAACTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3748 FBgn0032110 FBtr0079804 1 1 2 62 2L 9343824 9343842 AATCCCGACATGAACTACG 59 9343868 9343949 AGTCGTGATAAACACTCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31609 FBgn0051609 FBtr0079769 3 1 1 229 2L 9097671 9097689 AGTAGTAGCAGTTGTCCCT 59 9097940 9098269 AACAGACGTGATTTGGAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG9568 FBgn0032087 FBtr0079765 3 1 1 173 2L 9010955 9011044 CATGCAGCAAACTACACTC 59 9011179 9011199 GATTGTATAGACACTGCTGCT 59 NA Drosophila melanogaster 50 CG18661 FBgn0040964 FBtr0079763 2 1 1 61 2L 8998077 8998096 CGACTACATGTTCAACTCGA 59 8998120 8998138 ATAGTCCAATGGAGCAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12375 FBgn0031987 FBtr0079642 1 1 1 60 2L 8126110 8126130 GAAGATACTAGACATCAAGCC 57 8126070 8126088 TTCCTCAATGACATTGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5171 FBgn0031907 FBtr0079440,FBtr0079439,FBtr0114588 3 3 3 73 2L 7404146 7404230 GATGAAGATGCCATGAGAG 57 7404267 7404285 GTTTGAATCTGGGCATCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11321 FBgn0031857 FBtr0079386,FBtr0079385 3 2 2 81 2L 6761816 6761834 GTGTCCATGCTAAAGTGTC 58 6761678 6761771 TACTGCGATCGGTTATCTG 58 NA Drosophila melanogaster 50 CG15634 FBgn0031621 FBtr0077378 1 1 1 60 2L 4688103 4688121 TGAAGGGTAATCCTCTGGT 59 4688145 4688163 TAGGCATATAGGATGTGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16704 FBgn0031558 FBtr0077550 1 1 1 134 2L 3692499 3692517 ACTCATCTGCTGTCTTGTG 59 3692268 3692286 AAGCACTCGTTCGTATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34394 FBgn0085423 FBtr0112638,FBtr0112640,FBtr0112641,FBtr0112639 3 4 4 81 2L 3364934 3365439 CGTCTGATTGTGGACTACTC 59 3364872 3364890 AGACGTAGTTCTGTGACAC 58 NA Drosophila melanogaster 50 gkt FBgn0031506 FBtr0077574 2 1 1 80 2L 3160732 3160810 CTACTTTGCCGGGATACTG 59 3160854 3160872 AACTTCCCAATGCTAAGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG9879 FBgn0031444 FBtr0077700 3 1 1 60 2L 2665770 2665788 CTGTTCAAGGTGATCAGGA 58 2665812 2665830 TGAAGTTCATGATGTCCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33125 FBgn0053125 FBtr0077742 1 1 1 60 2L 2648513 2648533 CAGAGCAAACATTAATCCGAG 59 2648473 2648491 CCAGCATATTTCAGACTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 frtz FBgn0086698 FBtr0077911 1 1 1 132 2L 1712033 1712051 AGAAATGGTTACTCCAGGC 59 1711859 1711939 TAGTCACATTGGTCGTAATGG 59 NA Drosophila melanogaster 50 Ipk2 FBgn0031267 FBtr0078074 3 1 1 75 2L 573291 573309 ACTTTGCTCATGTTTACCC 57 573234 573252 TCTATCAGGCTCTGGAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3345 FBgn0031240 FBtr0078127 2 1 1 108 2L 270510 270528 TTTAAACGACGATCTCAGC 57 270599 270672 CTGATAAGCTTTGTAGTGCA 57 NA Drosophila melanogaster 50 CG33635 FBgn0053635 FBtr0091612 1 1 1 60 2L 158566 158585 GACCTGGATGAATACTTGCT 59 158525 158543 ACTTGACGTTGAAACTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mt:tRNA:W FBgn0013709 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR31603 FBgn0051603 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG40500 FBgn0069968 FBtr0111197,FBtr0111196 2 2 4 60 X 22292818 22292837 TATCGATATCGTTATGGGCG 59 22292860 22294277 TTTGTCAAGGATTGACTGG 57 NA DesignRelaxed Drosophila melanogaster 50 CG7280 FBgn0030966 FBtr0074655 1 1 1 60 X 18741599 18741618 CCAACGAGCTATTCTATGTG 58 18741558 18741579 TAATCCTCCGGATTTATCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5172 FBgn0030830 FBtr0114539 1 1 2 269 X 17115619 17115637 CTGATCGCCTTAACCTCAG 59 17116549 17116567 ACACAAGTCAGCATCAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9699 FBgn0030772 FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369 1 6 7 76 X 16588098 16588116 CATTGAGGCGGTTAAATGC 59 16580767 16580785 TGTAATCGCGATCCTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 eIF5 FBgn0030719 FBtr0074149,FBtr0074144,FBtr0074148,FBtr0074147,FBtr0074146,FBtr0074150,FBtr0074145 3 7 7 131 X 15882571 15882661 TTCGATCACAAGAATGAGC 57 15882458 15882476 AGTTAAATTGGTCTCCGGA 58 NA Drosophila melanogaster 50 CG15333 FBgn0029989 FBtr0071124 1 1 1 60 X 7913822 7913842 GGTGATAACGCTTTGATTCAG 59 7913782 7913801 GGGAGCGTATTTGATTACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3585 FBgn0023458 FBtr0070939 1 1 1 80 X 6135812 6135830 CATCAAGTGCATTGCTCTG 59 6135687 6135771 ATGTCCCAGATCTTAATGTCAC 59 NA Drosophila melanogaster 50 raptor FBgn0029840 FBtr0070885 1 1 1 60 X 5981265 5981286 CCTTAGGCACATTTATTAGCTC 58 5981226 5981246 TCGATATTATTGGCCTGTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4660 FBgn0029839 FBtr0070886 2 1 1 195 X 5973808 5973826 TTGTACCACATGAACAACG 58 5973505 5973649 CCCAGTAAATAATCCGCGA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Cyp4d14 FBgn0023541 FBtr0070426 3 1 1 89 X 2068504 2068522 TTTACCTACGTTCAGTCGG 59 2068370 2068389 CTTCATGGTGAAATCCAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3573 FBgn0023508 FBtr0070317 3 1 1 89 X 1818996 1819014 CTGCAGGAGCTAGATACTC 58 1819065 1819151 GTCCATCATCTTATCGATCCA 59 NA Drosophila melanogaster 50 CG9717 FBgn0039789 FBtr0085679 3 1 1 92 3R 26410832 26410850 GTCTTCATCCTCTACCAGG 58 26410567 26410585 ATCGGGAGTTAGCATTAGG 58 NA DesignNoJunction Drosophila melanogaster 50 Cnx99A FBgn0015622 FBtr0110908 2 1 4 115 3R 25142077 25142233 CCAAAGAGGACTCATTCGT 59 25141980 25141999 TCTACAGTAGATGGTGAGGG 59 NA Drosophila melanogaster 50 CG12877 FBgn0039544 FBtr0100446,FBtr0085223,FBtr0085222 2 3 3 83 3R 23536240 23536258 CGGATTATACAGGAGAGCG 59 23536380 23536400 GCGCAGATAATACTTGATGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11790 FBgn0039265 FBtr0084760,FBtr0084761 2 2 2 89 3R 20874456 20874476 TGAGAAGGGATATACCCAGAG 59 20875008 20875026 AAATAACTTTGCAGTGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5768 FBgn0039198 FBtr0110867 2 1 2 115 3R 20212409 20212427 GTATTACAGCATCTGCACG 58 20212190 20212333 TAGCCCATGTTATCTACAACTG 59 NA Drosophila melanogaster 50 oa2 FBgn0038980 FBtr0084260 3 1 2 186 3R 18340889 18342355 CCCTCAAGAGTCTGTTTCC 59 18342505 18342523 CTCATGTGTATCTCCGACG 59 NA Drosophila melanogaster 50 CG7079 FBgn0038849 FBtr0084043 1 1 1 60 3R 16873852 16873873 TAAAGATCTACGAGCTAGTTCC 58 16873743 16873762 TTGTCTAGCCACATAATCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG31203 FBgn0051203 FBtr0083926,FBtr0083924,FBtr0083923,FBtr0083925,FBtr0083927 1 5 5 86 3R 16575021 16575039 GATGGAATTACGGAAAGCC 58 16575088 16575199 GAACATAACCCTAAACACGG 58 NA Drosophila melanogaster 50 CG6006 FBgn0063649 FBtr0113477 1 1 2 132 3R 11995620 11995638 CAATACCATAATGCCGGTG 58 11995734 11995819 GATCTTGTTCAGTAGCGAC 57 NA Drosophila melanogaster 50 Zeelin1 FBgn0038294 FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034 3 4 5 122 3R 11002152 11004016 ACTACAGCCGAACAATTCC 59 11001978 11001996 GCTTGTCCCTCAAGTAGAG 59 NA Drosophila melanogaster 50 CG8863 FBgn0038145 FBtr0082751,FBtr0082754,FBtr0082753,FBtr0082752,FBtr0082755 3 5 5 91 3R 9210099 9210118 TTATCAGGCATGAGATGACC 59 9210172 9210190 GAACTGGATGATCAACGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14681 FBgn0037820 FBtr0100118 1 1 2 130 3R 6517164 6518078 CAAATTGGAACCGAACCAC 59 6518172 6518190 AGTAGTCCGTTGCAAATCC 59 NA Nonspecific Drosophila melanogaster 50 pum FBgn0003165 FBtr0081993,FBtr0081991,FBtr0081992,FBtr0081990 3 4 5 92 3R 5043824 5043935 GACGACAACGATAAGTCAC 58 5043750 5043768 TGAGTTTGTGACCTGATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG2698 FBgn0037536 FBtr0081784 3 1 1 108 3R 3828159 3828284 CGTATACGTGCTCATTTCC 58 3828356 3828374 TATCCACATGGATTGTCCG 59 NA Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199 3 14 15 133 3R 1100031 1100465 GAGCACAACGTATTTGGTG 59 1099916 1099934 TACATATTCTCGCCAGTCC 58 NA Drosophila melanogaster 50 chb FBgn0021760 FBtr0089462,FBtr0089460,FBtr0089461 1 3 3 60 3L 21172075 21172093 CAATGTGAACGATGTGACC 59 21172116 21172135 GCTAGATTCGAAAGATTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Indy FBgn0036816 FBtr0075083,FBtr0075082,FBtr0075081 1 3 3 86 3L 18824243 18824263 GTGGAGTACTGTAATCTACAC 57 18824113 18824195 GAGGCCAAAGTGTAATCTG 58 NA Drosophila melanogaster 50 CG5642 FBgn0036258 FBtr0076022 1 1 1 161 3L 12136976 12136994 AAACTGGCATCTTTCATCG 58 12136774 12136851 GTAGAAGTCCAACTCGGAG 59 NA Drosophila melanogaster 50 CG32094 FBgn0052094 FBtr0076081 1 1 1 82 3L 11806613 11806631 AACACTCCAGGAAGTTACC 58 11806486 11806504 AACAGACAAGTGTTGTGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14135 FBgn0036193 FBtr0076111 2 1 1 181 3L 11685610 11685628 AGATCAGAGGAAGAACTCG 58 11686325 11686346 CTCGTTCTTTGATTCTTCAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33490 FBgn0053490 FBtr0089526 1 1 1 90 3L 11566886 11566964 AAGTATTCGTGGTATCCCT 57 11566814 11566832 ATTCTAGCAGAGATCGGAC 58 NA Drosophila melanogaster 50 CG32062 FBgn0052062 FBtr0076289 3 1 5 193 3L 10580768 10580787 ATCCAAATCTACGCTTCCAG 59 10582611 10583232 TTAGGTTTCTACACCAGCC 58 NA Drosophila melanogaster 50 CG13312 FBgn0035931 FBtr0076587 1 1 1 79 3L 8799328 8799346 GCCAGTATATCTACTGCAC 57 8799267 8799285 ATCGAAGTACATGGATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 melt FBgn0023001 FBtr0100141,FBtr0076917 1 2 2 81 3L 7134394 7134470 AGTCAACGGAAATAGCGAG 59 7134515 7134533 GGTCCTGCTGGTATTATCG 59 NA Drosophila melanogaster 50 msl-3 FBgn0002775 FBtr0076926,FBtr0076927 3 2 2 86 3L 7117435 7117511 GTTATGTCCACTGTCTGCA 59 7117367 7117385 ATACAGCAAGTGGTCATCC 59 NA Drosophila melanogaster 50 LanA FBgn0002526 FBtr0077014 2 1 1 83 3L 6199126 6199144 CATGTGGTTACAGTTCAGC 58 6198992 6199079 TTGTGGAGAACCAAGTCTC 59 NA Drosophila melanogaster 50 mad2 FBgn0035640 FBtr0077113 1 1 1 82 3L 5805863 5805884 CTAACCATTCTAATGTCCAAGG 58 5805741 5805820 TTCGAGAGCCATTCTTCAG 59 NA Drosophila melanogaster 50 sif FBgn0085447 FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713 1 5 8 94 3L 5692112 5697030 GTTCCTTCGCAAGATTTCG 59 5697088 5697106 TATATGGTGACGCCATGAC 59 NA Drosophila melanogaster 50 CG14995 FBgn0035497 FBtr0073274,FBtr0073273 1 2 4 183 3L 4097663 4097681 CTACGAGGATGCATACCAG 59 4095866 4097518 GTAGTATTCCTCTTTCGTGGG 59 NA Drosophila melanogaster 50 Gr64d FBgn0035486 FBtr0073197,FBtr0073198 2 2 2 120 3L 4033402 4033470 CTCATCTTTGCAATGGCTG 59 4033554 4033572 AAATGCTCATGGAGGAACC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14980 FBgn0035470 FBtr0073180 2 1 1 272 3L 3897932 3898013 TTTCTGAATGCTGACCAGG 59 3897678 3897696 GTCCGCAATGATACTAAGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG11537 FBgn0035400 FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117 1 5 5 80 3L 3130292 3130310 GGTCTCGGTCTTTATAGCC 59 3130170 3130248 CCAAACACTTGCATGAAGG 59 NA Drosophila melanogaster 50 CG1275 FBgn0035321 FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906 1 4 4 62 3L 2253685 2253787 GTATGGCAACTCCATTCTG 58 2253641 2253659 AGCTTCAGAGTCTTCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 zormin FBgn0052311 FBtr0110858,FBtr0110856 3 2 4 136 3L 2125346 2125365 GATGTTAGCAGGGAGATCAG 59 2124604 2125249 CATTTGGTTCCGTATTGAGAG 59 NA Drosophila melanogaster 50 rno FBgn0035106 FBtr0072531,FBtr0072532 1 2 2 89 3L 197405 197425 CGAACGAAATGGTATTCTGTG 59 197278 197354 ATAGCCATTGTCCTGATGG 59 NA Drosophila melanogaster 50 Pof FBgn0035047 FBtr0072327,FBtr0072328 2 2 2 91 2R 20558283 20558302 TGCAATTTAGACAGAACAGC 58 20558417 20558435 TAGTAAACAACCTGTGGGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG30193 FBgn0050193 FBtr0071948,FBtr0071949,FBtr0071946,FBtr0071944 2 4 7 76 2R 18813126 18814633 GGCTTATAATATTGTTCTGCGG 59 18814670 18814688 CTTGACATCCTTGGTCCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG34204 FBgn0085233 FBtr0112397 3 1 1 62 2R 17684053 17684071 GGCTGTACGTCTAGTAGAG 58 17684095 17684115 CCAATGCATGTAATTAGACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pcl FBgn0003044 FBtr0086735 2 1 1 239 2R 14024861 14024879 CTGTCAGCCATAAGATCAC 57 14025140 14025214 AAACAAAGAACATATCGCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG5522 FBgn0034158 FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026 3 6 6 89 2R 12676159 12676301 ACTACACTATAGCAGCCTC 57 12676354 12676372 AAATAACCGCATCCAACTG 58 NA Drosophila melanogaster 50 CG10102 FBgn0033927 FBtr0087559 1 1 1 152 2R 10249467 10249485 ATAGACCAGCTCAATTCCG 59 10249184 10249202 CATGTAGATCTGGTAGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4643 FBgn0043010 FBtr0087762,FBtr0087763 3 2 2 77 2R 9108960 9108978 AAGAACTACGAGTTCCTCG 58 9108838 9108856 GTAGACAGCGGATACTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30035 FBgn0050035 FBtr0088074,FBtr0088073 3 2 2 101 2R 7561243 7561261 ATTGATGGCAATCTCTGCA 59 7561325 7561403 TAGAAGAATCTTTCTGCCCG 59 NA Nonspecific Drosophila melanogaster 50 CG12129 FBgn0033475 FBtr0088395 1 1 1 82 2R 5921490 5921508 CTCTGGAGAAGTCAAGGAG 58 5921605 5921623 AAAGCTCCTTATCGATGCC 59 NA DesignNoJunction Drosophila melanogaster 50 Opbp FBgn0050443 FBtr0086109 3 1 1 82 2R 2542550 2542568 ATAAACGCTGTGGTAAACG 58 2542613 2542693 AAGTTATCCACGTCAAACAC 58 NA Drosophila melanogaster 50 dream FBgn0033051 FBtr0086028 3 1 1 60 2R 1908911 1908988 AAATGCAATCCAAAGACCG 59 1908869 1908889 ACGTACTTAGAGGTAAGAGTG 58 NA DesignRelaxed Drosophila melanogaster 50 smi35A FBgn0016930 FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289 1 5 5 80 2L 14189225 14195743 GAGCTAATGAGCTTGAACCT 59 14189164 14189182 GAAGCGTCGTATGAGACTC 59 NA Drosophila melanogaster 50 Lip2 FBgn0024740 FBtr0080123 1 1 1 161 2L 10702988 10705038 AGTTTATCAAGAAACGCCAG 58 10702784 10702805 CGTAGTTAAAGGCTTCTAACAG 58 NA Drosophila melanogaster 50 CG31716 FBgn0051716 FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012 3 6 6 95 2L 10400665 10400738 GAAGCAGAGTAACAGATGC 58 10400797 10400815 TTAATATGGGTGCTTGCTG 57 NA Drosophila melanogaster 50 CG16947 FBgn0031816 FBtr0079271 1 1 1 80 2L 6460477 6460570 CGTGAGATTTGGTAAGTACAC 58 6460417 6460436 CATCCATGACAATGGTACTG 58 NA Drosophila melanogaster 50 Chd1 FBgn0016132 FBtr0077674 2 1 1 182 2L 2980569 2980648 AATCCCGCGATAGATACAG 58 2980313 2980331 ATCCATAGTAATTGGGCGG 59 NA Drosophila melanogaster 50 Rab5 FBgn0014010 FBtr0077793,FBtr0077798,FBtr0077796,FBtr0077794,FBtr0077797,FBtr0077795 2 6 6 202 2L 2360795 2360983 CTGCATAAACAAGCCTCAC 59 2360548 2360569 TCGTTCTTAGGTAGTTTCTTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CR32658 FBgn0040859 FBtr0073628,FBtr0073626,FBtr0073627 1 3 3 132 X 11985664 11985685 GCTTAGTCTAGGAATCAATTGC 59 11985841 11985859 CATCAAGTGTGCGTTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14191 FBgn0030981 FBtr0074665 2 1 1 118 X 18976013 18976031 GATATAGCGGCGGATACAG 59 18976112 18976131 GATGATCTTAATCGTGCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7033 FBgn0030086 FBtr0071291,FBtr0071289 1 2 2 122 X 8985099 8985117 CGAGCTCAAGTCCATACAG 59 8985203 8985453 GCATTCTCAATACGCTGTG 59 NA Drosophila melanogaster 50 CG32736 FBgn0052736 FBtr0071008 3 1 2 167 X 6905631 6905649 AACACATGAGTCCGTACAG 59 6905780 6905859 AAGTGCGGTAGAAATTGGT 59 NA InUTR Drosophila melanogaster 50 Pp2C1 FBgn0022768 FBtr0070685 1 1 1 107 X 4577451 4577533 CCCAGTACCTTTAGATGCT 58 4577362 4577380 TATCTCGCCGATTAGATGC 59 NA Drosophila melanogaster 50 CG14238 FBgn0039429 FBtr0085014 2 1 1 81 3R 22285334 22285416 TCACAAGGAGGAACATACAG 59 22285459 22285478 CAGGATCACATTGAGTACGA 59 NA Drosophila melanogaster 50 RpS27 FBgn0039300 FBtr0084868 3 1 1 192 3R 21072286 21072304 ACTTCATGGACGTGAAGTG 59 21072046 21072065 ATAATTTGTGGTTCATCGCG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG34027 FBgn0054027 FBtr0100082 2 1 1 80 3R 20929603 20929672 GAATCACAGAGGAGAACGA 58 20929541 20929562 TAGCATACACTCTAGAGAACTC 58 NA Drosophila melanogaster 50 Mpk2 FBgn0015765 FBtr0084581 3 1 2 174 3R 19977715 19977830 CAATGCAATGATATGCGCA 59 19977483 19977579 GTATTGATTCTCTGTTCCACG 58 NA InUTR Drosophila melanogaster 50 CG5346 FBgn0038981 FBtr0084289 1 1 1 80 3R 18347502 18347763 ATGAGAAGCTCAAGACTGC 59 18347440 18347458 CACGGATATAGTGCTGTCG 59 NA Drosophila melanogaster 50 CG31262 FBgn0051262 FBtr0083412 1 1 1 81 3R 13044929 13044950 TGGATCTGAGAAGATAGATGAG 58 13044800 13044888 TACCCGATACAAAGTGATGG 59 NA Drosophila melanogaster 50 CG11769 FBgn0038441 FBtr0083296 1 1 1 100 3R 12339391 12339409 CATCCCATTAACAACAGCA 57 12339473 12339491 GATATGAACCGGACTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6218 FBgn0038321 FBtr0083119 2 1 1 116 3R 11165161 11165180 TTATTTCAGGAACCGGATCC 59 11164872 11165082 GATACGAGATGTACCAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 3 7 12 160 3R 11122417 11125003 AGAAATACGATGAGGTTGC 57 11126526 11126544 CTTCTCCTCAGAGACTTCC 58 NA Drosophila melanogaster 50 CG18746 FBgn0042103 FBtr0081775 3 1 1 86 3R 3615232 3615253 CGATCTGAACTTTAATCGATGC 59 3615017 3615186 ACTTGACTAGGTACCCTCAG 59 NA Drosophila melanogaster 50 MED31 FBgn0037262 FBtr0078856,FBtr0078857 3 2 2 82 3R 468366 468479 CCAACTATCTAAACTTCCTTGC 59 468520 468540 CCAGTACTGCAGATACTTCAG 59 NA Drosophila melanogaster 50 CG14569 FBgn0037123 FBtr0078456 3 1 1 69 3L 21724443 21724461 TTCCCTTCGATTTACCCAG 58 21724392 21724410 CCATAGGTGTTATCAGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7707 FBgn0036703 FBtr0075212 2 1 1 81 3L 17237075 17237093 CAACGTATTCAGTGCTGAG 58 17237138 17237218 TCGAAATTGTCGCAATAGG 58 NA Drosophila melanogaster 50 CG3919 FBgn0036423 FBtr0075716 1 1 1 81 3L 14404841 14404859 GAGCTTTCTGAATTCGGAG 58 14404904 14405146 AAATTGTGTTGCCTCAACG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Rac2 FBgn0014011 FBtr0076867 1 1 1 60 3L 7427532 7427550 ATCAGCTATACGACCAACG 59 7427490 7427508 AATAGTTGTCGAACACCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14826 FBgn0035750 FBtr0076833,FBtr0113151 2 2 2 60 3L 7227964 7227982 GGAATTCATGGGACATCGA 59 7228004 7228024 CTTCAAAGACCCACTATTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trio FBgn0024277 FBtr0072648,FBtr0072646,FBtr0072645,FBtr0072649,FBtr0072644,FBtr0072647 3 6 6 80 3L 998876 998894 CCGAATACATAGTCAGTGC 57 998722 998832 AGTTACTCAGATCCAGACG 58 NA Drosophila melanogaster 50 Kaz1-ORFB FBgn0063923 FBtr0072492,FBtr0100224 1 2 6 90 3L 217695 217713 AGTACAATCCAATCTGCGG 59 217767 217785 ATATACTCACTTAGGCCGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Unc-89 FBgn0053519 FBtr0091464,FBtr0113464 2 2 2 80 2R 19886318 19886336 CTACATCAGGCAGACTCTG 59 19886180 19886274 AGATCCTTGATCGTCAGAC 58 NA Drosophila melanogaster 50 CG13539 FBgn0034833 FBtr0071998 1 1 1 60 2R 19072703 19072721 TCACTATGAAGTCCACGTC 58 19072745 19072763 ATCTACGATTGGAAACGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13501 FBgn0034684 FBtr0071804 3 1 1 60 2R 17947347 17947419 AAGTTCTGGGTATATTCCTGG 58 17947307 17947325 CTGAAGATCTCGGCTAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 LBR FBgn0034657 FBtr0071711,FBtr0071712 2 2 3 98 2R 17608823 17609371 GGTTTCCGAGGTATCATCG 59 17609432 17609451 TTAAATGCTTTGTTCGGTGC 59 NA Drosophila melanogaster 50 CG15118 FBgn0034418 FBtr0086590,FBtr0086589 3 2 5 127 2R 15024323 15024464 ATCGACCAGAACGATAAGG 58 15024214 15024232 TACTCATAGGTCGCATTGC 59 NA Drosophila melanogaster 50 GstE8 FBgn0063492 FBtr0086676 1 1 1 60 2R 14295953 14295971 TATTACGAGGAGGCATGTG 58 14295995 14296013 TGAATTTCTTGAGGAGGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6429 FBgn0046999 FBtr0087044 1 1 1 72 2R 12760754 12760772 GATCACTTGGGATCAGTGG 59 12760808 12760895 AGAACTATCCGTCAATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5065 FBgn0034145 FBtr0087108 2 1 1 81 2R 12509108 12509190 AAGATCAGAACCTACTGTGTC 59 12509233 12509251 AGTTTGAGCTTCTCATCGA 58 NA Drosophila melanogaster 50 Nup62 FBgn0034118 FBtr0087150 3 1 1 61 2R 12233077 12233095 TAGACAACTTGAACGAGGC 59 12233120 12233138 TCCGATCTGTATGATGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dg FBgn0034072 FBtr0087258,FBtr0087257,FBtr0087256 1 3 3 100 2R 11972593 11972678 TTTATGGCCTACCTCTGGA 59 11972511 11972529 ACTTATCTCCACGGTTTCC 58 NA Drosophila melanogaster 50 shot FBgn0013733 FBtr0087619,FBtr0087617,FBtr0087620,FBtr0087616,FBtr0087621,FBtr0087618 2 6 6 83 2R 9762420 9762438 GCGACAGATTGAACAACTC 59 9761956 9762374 ACAGCTTGTCTGTTTAATGC 59 NA Drosophila melanogaster 50 CG9328 FBgn0032886 FBtr0081416,FBtr0081415 3 2 2 116 2L 20813271 20813289 GATCCTGCCTAAGAAGCTC 59 20813444 20813462 TCTGATTTCTGGTTCAGCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG11019 FBgn0040998 FBtr0081359 1 1 1 67 2L 20427180 20427198 CATAACCGATTCCGTCTCC 59 20427227 20427247 GAATATAGCTATTGCCAACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)37Bb FBgn0002021 FBtr0081177 1 1 1 64 2L 19051030 19051110 AGAAGGATGACACGTATGC 59 19050984 19051002 GAATTGCTGACAAAGACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2816 FBgn0031564 FBtr0077536 1 1 1 115 2L 3703599 3703617 AGGTCTGAGCATTTGAAGG 59 3703810 3703881 TGCAGGCATAGTTTCACTC 59 NA Nonspecific Drosophila melanogaster 50 tRNA:CR31333 FBgn0051333 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:P:90Cb FBgn0011945 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:Y1:85Ae FBgn0012028 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me18S-G1952 FBgn0082950 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-2b-2 FBgn0046823 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:G3:35Ba FBgn0011862 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Ppr-Y FBgn0046697 FBtr0113889 3 1 1 130 YHet 162097 191734 TGCATGAATCTATACAGGAGTC 59 191904 191922 TCGGAGTTCAATAGGAACG 59 NA Drosophila melanogaster 50 CG32820 FBgn0052820 FBtr0070053 2 1 2 252 X 21484496 21484637 GAACATGAATCGCAACCTC 59 21484262 21484280 GATGTGCAGTGGTATCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 sol FBgn0003464 FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676 2 4 4 83 X 21228148 21228166 AGAGCTACAATGTGGTGTC 59 21228210 21228300 GAACGATGATTACTTGTCTCTG 58 NA Drosophila melanogaster 50 CG33491 FBgn0053491 FBtr0089603 1 1 1 75 X 20073272 20073290 ATTAAGCAGGAGTTCGAGC 59 20072823 20072841 TGTAGTCACCAGAGGTCTC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG14223 FBgn0031053 FBtr0074758 1 1 1 60 X 19554280 19554299 TTTAGTCACTTCCACTCGAC 59 19554239 19554257 CTATGCCCACTCCAATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CoRest FBgn0053525 FBtr0091483,FBtr0091484 3 2 5 98 X 19422847 19422935 AAACTTTCCTACGATTGCC 58 19422997 19423015 ATCTGGTCGAGATTGTAGC 58 NA Drosophila melanogaster 50 vav FBgn0040068 FBtr0074677,FBtr0074678 3 2 3 253 X 19157183 19157201 CATCAAGTTGTTCCTGGAC 58 19157984 19163303 TATTGTCGGTGGTAGTGGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG6617 FBgn0030944 FBtr0074615 2 1 1 83 X 18544259 18544277 CATCATCAAGGAGGAGTGG 59 18544194 18544213 AAGTAGTTCATGATCAGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8142 FBgn0030871 FBtr0074472 2 1 1 267 X 17737802 17737820 GATCTGTTCGAGATGTCGG 59 17737491 17737509 TGATCTGCAGATACTCGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG12995 FBgn0030826 FBtr0074401 1 1 2 62 X 17104096 17104114 GTATTTGCGGTCGAATGTG 59 17104052 17104070 TTTACTGCTACCAACTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4678 FBgn0030778 FBtr0074320,FBtr0074319 3 2 3 115 X 16602670 16602690 CGGTAAAGGATTGGATATCCA 59 16602767 16603420 GTAGGTCTGGAACATGGAG 59 NA Drosophila melanogaster 50 Arp14D FBgn0011742 FBtr0112868,FBtr0074295 1 2 2 83 X 16444493 16446387 GATATCGAAGTCAAGGATCTG 57 16444430 16444448 GTTCTCCATCGGATAGGAG 58 NA Drosophila melanogaster 50 Chc FBgn0000319 FBtr0112798,FBtr0074180,FBtr0112797,FBtr0074182,FBtr0074181,FBtr0074179 1 6 6 92 X 15722670 15722757 CTTTATCAGTGTTACGACTTGC 59 15722599 15722617 AATCAAATAGGGCATGGCA 59 NA Drosophila melanogaster 50 CG32590 FBgn0052590 FBtr0073988 2 1 1 60 X 14732897 14732915 GATGAAGTCTTTCAGCTGC 58 14732855 14732875 TGCCGTATTCCATATCATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32602 FBgn0052602 FBtr0073911 2 1 1 61 X 14181903 14181921 AAGCCTACAACTCTGAAGC 59 14181946 14181964 GTCGTCTTCTGAGAAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0469 FBgn0040153 FBtr0113318 1 1 2 176 X 14100667 14100685 ATAACTTTGCCGACAAGGA 59 14099474 14100397 CTCTGGTAACGATGAGCTG 59 NA Drosophila melanogaster 50 CG9940 FBgn0030512 FBtr0073844,FBtr0073845 3 2 2 81 X 13580650 13580670 GGACATTAATCCTATTGGTGG 58 13580523 13580607 GGGCAGGTTGAATTTATCC 58 NA Drosophila melanogaster 50 CkIalpha FBgn0015024 FBtr0073680,FBtr0073682,FBtr0073681 2 3 3 82 X 12550118 12550137 CTGAACTATTGTCGTAGCCT 59 12550182 12550381 GTTCTGAACAGTATGCGGA 59 NA Drosophila melanogaster 50 tomosyn FBgn0030412 FBtr0073676,FBtr0073679,FBtr0073677,FBtr0073678 2 4 4 84 X 12531143 12531162 GAAACATACACGTTGTTCAC 57 12531208 12531302 GTTCTAACCACTTCAATTGC 57 NA Drosophila melanogaster 50 CG1824 FBgn0030403 FBtr0073658 2 1 1 74 X 12489035 12489053 GTTTGTGGACCTACTTGGA 59 12488904 12488922 TATAAGCCACTATCAGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG1924 FBgn0030377 FBtr0073634 2 1 1 60 X 12071514 12071532 CACCGATGATCGATAACCC 59 12071472 12071490 GGATTGGCAATCTTTCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2467 FBgn0030355 FBtr0073594,FBtr0073595 1 2 2 139 X 11806290 11806308 TACACTACCAACGGATTGC 59 11805446 11805534 TTGAGATCAACCTGCATGG 59 NA Drosophila melanogaster 50 Upf1 FBgn0030354 FBtr0073596 2 1 1 88 X 11795424 11795442 GGACTTTGGGCAAATATCG 58 11795285 11795303 AGAACTGATTCAAGCTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10353 FBgn0030349 FBtr0114451,FBtr0114452 1 2 2 80 X 11773136 11773154 CATCCCTATAAACGTCCCA 58 11773013 11773095 GATAATGTTCTGGTAGATGACG 58 NA Drosophila melanogaster 50 Dlic2 FBgn0030276 FBtr0073441,FBtr0073443,FBtr0073442 3 3 4 121 X 11049247 11055097 AAAGGAGAACCTATGGTCG 58 11055182 11055200 CAATGAGTGTCGTCTTTCC 58 NA Drosophila melanogaster 50 CG16922 FBgn0030254 FBtr0073389 3 1 1 60 X 10850645 10850663 GGAGTCAAAGATCTCGGTC 59 10850687 10850705 CTCATTGGAGTTCATGGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myo10A FBgn0030252 FBtr0073388,FBtr0110979 2 2 2 70 X 10855477 10855495 GTGATATACCGCTGGATCC 59 10855529 10856137 TTTGTGACAATGCATGAGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG34408 FBgn0085437 FBtr0114584 2 1 4 81 X 10120619 10120637 GATCTGAATGTTTCGCTGG 58 10120681 10121393 TCACTAAGGTGTCTGTTTCC 59 NA Drosophila melanogaster 50 btd FBgn0000233 FBtr0071379 3 1 1 81 X 9589911 9589929 GATTATTACGGCAATGCGG 59 9589974 9589992 AACTCCATGGCTGATAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 e(r) FBgn0011586 FBtr0071266 1 1 2 162 X 8799405 8799543 AAGGATATCACCATGTCGC 59 8799261 8799279 TAATGGTCGGAGTGTTTGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG11294 FBgn0030058 FBtr0071224 2 1 1 99 X 8587431 8587450 AGTATATGTTTGGCCGTAGG 59 8587351 8587369 GGATAGTGGGTCTTCTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11265 FBgn0030049 FBtr0071212,FBtr0112963,FBtr0071213,FBtr0112964 3 4 4 142 X 8459066 8459084 ATGATATCGGTCGAAGCAG 59 8459189 8459420 AATGATTCGACCCAGTATCG 59 NA Drosophila melanogaster 50 Cp7Fa FBgn0014464 FBtr0114578 3 1 2 261 X 8365617 8365635 TTCCAATACATGAACGCCT 59 8366471 8366489 TGTCCACTATCTTCTCTGC 58 NA DesignNoJunction Drosophila melanogaster 50 ND75 FBgn0017566 FBtr0071180,FBtr0071181 1 2 2 171 X 8143115 8143194 GCACTATTAGCAAATCCATCG 59 8142964 8142982 TAGATAGCCACACTCTGCT 59 NA Drosophila melanogaster 50 CG1530 FBgn0029983 FBtr0071097 2 1 1 83 X 7834384 7834405 GGACATTTAAGTTCGAGTTTCC 59 7834448 7834537 TGAGGTGTTCCTTGTAATCC 59 NA Drosophila melanogaster 50 CHES-1-like FBgn0029504 FBtr0071079,FBtr0112946 2 2 2 86 X 7580674 7580692 CAGAATAACCAGGGAGGAG 58 7580530 7580625 GATGTTGTGATTCTCCTCAC 58 NA Drosophila melanogaster 50 CG3032 FBgn0029928 FBtr0071032 3 1 1 60 X 6907503 6907523 TCAGATGAGATTCCAATCAGC 59 6907463 6907484 CCTGCGATAGATTTATGTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3075 FBgn0029905 FBtr0070974 3 1 1 61 X 6713512 6713531 GCAGGTTCAGATTATTCAGC 58 6713470 6713489 GCAGTGCGATAAAGTATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lag1 FBgn0040918 FBtr0070937,FBtr0070938 2 2 2 179 X 6152816 6152938 CATTTATAGCTCATCCGTGGA 59 6152514 6152532 TCACTGGAACGTATGTCAC 59 NA Drosophila melanogaster 50 CG4020 FBgn0029821 FBtr0070824 1 1 1 80 X 5800638 5800658 GGCGTACAACTATCAAATTGG 59 5800697 5800772 GCTGAAAGTTACCATACTTGAG 59 NA Drosophila melanogaster 50 CG17758 FBgn0029780 FBtr0070855 1 1 1 63 X 5549307 5549325 CTACGGCAGCTTCTATCTG 59 5549189 5549207 CGAATAGATCATGCTGCCA 59 NA DesignNoJunction Drosophila melanogaster 50 Ptp4E FBgn0004368 FBtr0070725,FBtr0070724 3 2 2 95 X 4843694 4843785 CGAATTAGCTACCATGAGCA 59 4843842 4843861 GTACTCCGTAAGATTCGTGG 59 NA Drosophila melanogaster 50 CG2947 FBgn0029676 FBtr0100247,FBtr0070598,FBtr0070597 1 3 3 80 X 3685382 3685400 ATGTCTGATATACTGGGCG 58 3685518 3685536 GATGTTACCCGGATTTGAC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514 3 9 14 87 X 3215172 3215190 CGTTTCTATATCGCTCCGA 59 3215240 3219968 TCTTTAAACCTTTCGCTAGC 58 NA Drosophila melanogaster 50 CG3526 FBgn0040355 FBtr0070546,FBtr0113325 3 2 2 60 X 2787337 2787357 CAATAGGATGACCTTCTATCG 57 2787378 2787397 GGAGCAAAGATCATAGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF2B-epsilon FBgn0023512 FBtr0070350,FBtr0070351 3 2 2 60 X 1814874 1814894 GATTCCATGATGGATTGTCTC 58 1814773 1814792 GCACTAGATGATTCTCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 arm FBgn0000117 FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988 2 4 5 93 X 1787501 1787519 CAGAAGAAGCATATGAGGG 57 1786143 1787446 GTATCATATCCTTGCTGATGG 58 NA Drosophila melanogaster 50 CG11417 FBgn0024364 FBtr0070212 1 1 1 61 X 1250161 1250182 GGTAAACCTGAATGATAATCGC 59 1250204 1250222 GATCGATGTTGTACTCGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DAAM FBgn0025641 FBtr0070241,FBtr0070240,FBtr0070239 3 3 3 82 X 1187405 1187424 TTCTCATGCTCGGTATACAG 58 1187282 1187360 AAAGAAGTCCAAATGCCTG 58 NA Drosophila melanogaster 50 y FBgn0004034 FBtr0070071 2 1 1 66 X 250778 250796 TTACAAACTTCAGGAGCGA 58 250826 250844 CTTTAGTCGGGTATTCGGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CR40560 FBgn0085743 FBtr0114193 1 1 1 107 U 3558148 3558167 TCACGTACTGGTTAACTCTC 58 3558060 3558081 GGTGGTAAATTCCATCTAAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40968 FBgn0085546 FBtr0113959 1 1 1 60 U 6307298 6307319 CTACAATCGAGATAATGCTAGG 57 6307340 6307358 CTTTGAGCTTATCCAGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Caps FBgn0053653 FBtr0091631 3 1 3 83 4 1247981 1248072 ATAATCACAGTACACCGTCG 59 1248867 1248885 CATCCTCTGAATCACCCTC 59 NA Drosophila melanogaster 50 ferrochelatase FBgn0024891 FBtr0085849,FBtr0085850 3 2 3 123 3R 27637035 27637108 ATCGGAGCAATAATCTGCC 59 27636930 27636948 GTTTCCACAAATTTGGCCA 59 NA Drosophila melanogaster 50 CG34046 FBgn0054046 FBtr0100101 2 1 1 69 3R 27535056 27535074 AAGCAAGGCTCATACACTG 59 27535176 27535195 GTGCTTGTGACTTGTAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11340 FBgn0039840 FBtr0085766 1 1 1 60 3R 27128932 27128950 AGTCAAGTCCACATTTGTC 57 27128890 27128909 GGTCCTTCTATATCCATGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ctr1C FBgn0062411 FBtr0085750,FBtr0085749 1 2 2 60 3R 26789596 26789616 GGAAGGGATCAGTATAATCGG 59 26789556 26789576 GCTGGTTGTAATTGTAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tmod FBgn0082582 FBtr0085658,FBtr0113483,FBtr0085660 2 3 7 81 3R 26359220 26397539 GATCACTGAGACTTCTGCC 59 26397583 26397602 GTACTCACTCAGATCCTTGC 59 NA Drosophila melanogaster 50 jdp FBgn0027654 FBtr0085681 2 1 3 94 3R 26345397 26345415 CGATGAGCTACAAACAGTG 58 26344287 26345339 GTGCATGGACTCTTTATCC 57 NA Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085631,FBtr0085634 3 4 5 242 3R 26212044 26212062 CAGCGATCTGATCAATGTG 58 26211758 26211777 ATCTTCTTGAGAGTGGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7943 FBgn0039741 FBtr0085560,FBtr0085559 1 2 2 207 3R 25873516 25873534 TTTCGTACTGCGAGAAGAG 59 25873772 25873790 TACGTAAATTCGCTTGCAC 58 NA DesignNoJunction Drosophila melanogaster 50 Axn FBgn0026597 FBtr0085554,FBtr0085553,FBtr0085555 3 3 3 95 3R 25858740 25858816 CACCTTTCAGGTGATACCTC 59 25858874 25858892 AACTTGGGTATCAGCAAGG 59 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 1 8 8 120 3R 24962131 24962214 CCAATGATAAGCCCTACTCC 59 24962294 24962315 CCCATGAACATATAGGTTTCAC 58 NA Drosophila melanogaster 50 fkh FBgn0000659 FBtr0085321 1 1 1 60 3R 24409596 24409614 TGGCCATTCAGAATAACCC 59 24409554 24409575 ATGATGAACTGATAGATCTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp6a18 FBgn0039519 FBtr0085183 1 1 1 60 3R 23305687 23305705 ACAGTCGGTCATTATTCCA 58 23305729 23305747 GGGTTCGGGATAAATACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14262 FBgn0039503 FBtr0085177 2 1 1 60 3R 23090359 23090377 ATCATTGATCCACGAACCC 59 23090317 23090335 GATGGCGTAGTTTAGAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14246 FBgn0040608 FBtr0100441 1 1 1 63 3R 22555431 22555449 TATCCGTGTTTGATAGCCA 58 22555476 22555494 ACATGGCTGAAAGTGAGAG 59 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG6478 FBgn0039436 FBtr0085057 1 1 1 261 3R 22449011 22449029 TCAGTGGTGGATCTATTGG 58 22448768 22448786 AATTCCTTCTGGAGCTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nf1 FBgn0015269 FBtr0100113,FBtr0084953,FBtr0084952 3 3 3 83 3R 21814618 21814636 AACATATTCTACCAGGCCG 59 21814681 21814754 CGTTTCTCCAATCTTGTATCG 59 NA Drosophila melanogaster 50 CG4685 FBgn0039349 FBtr0100571,FBtr0084891,FBtr0100570,FBtr0100569 2 4 4 192 3R 21452227 21452245 GATTCCAGCAATGCAAAGG 59 21451877 21452071 GTTTGTGCCACTTCTTGAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31370 FBgn0051370 FBtr0084829 2 1 1 124 3R 21129292 21129313 GGGAAACACTAAGAAAGATTGG 59 21129488 21129507 ATCAGTTTCTTCGTTAGTCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG11839 FBgn0039271 FBtr0084766 1 1 1 60 3R 20896232 20896252 GAAACTACTGTCGAGAAACTG 58 20896271 20896292 CCGATTTATTGGTCTTATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34290 FBgn0085319 FBtr0112486 2 1 1 160 3R 20115194 20115212 ATCGTTGGATTCTATCCGC 59 20114891 20115017 ATTCCGAAAGTTGGATGGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG5991 FBgn0026576 FBtr0084537,FBtr0084536,FBtr0084538 2 3 3 60 3R 19878787 19878805 GATTCTTCTCCTACACCGC 59 19878829 19878847 TCCATGTAGATTTCGACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31365 FBgn0051365 FBtr0084406 1 1 1 87 3R 18950824 18950842 GCGAGGAGATATCTCAGGA 59 18950695 18950714 TGCTCATCTCTATCGTTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33092 FBgn0053092 FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144 1 7 7 268 3R 17705102 17705177 AGGACTTTCGGGATTTGTG 59 17705407 17705427 AGGTACCAGTGAAGTTAATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG31178 FBgn0064912 FBtr0084138 2 1 1 62 3R 17699906 17699924 CCGTTATGGGATACTACGA 57 17699947 17699968 CACATTGGATCAAAGGATACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp93a FBgn0038859 FBtr0084030,FBtr0084031 2 2 2 89 3R 16954934 16954952 AGAGCCTCAATAGTTGCAC 59 16954809 16954827 CAGGATAGAAGTCGCAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 H FBgn0001169 FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917 3 4 4 172 3R 16452160 16452178 GTAGTACCGACCAAATGTC 57 16452313 16452498 CAGATTCAGTGGTAAGTCTG 57 NA Drosophila melanogaster 50 H FBgn0001169 FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917 1 4 4 146 3R 16450480 16450500 GCATCATTCAGAAACTCATCG 59 16450608 16450776 AGGGTGGAGAAACTTTGTG 59 NA Drosophila melanogaster 50 mun FBgn0053518 FBtr0091463 3 1 1 106 3R 16215763 16215781 GATAACAGTAATCCGGCCA 59 16213338 16215693 AACTTTAATCTGCACTCGC 58 NA Drosophila melanogaster 50 CG31213 FBgn0051213 FBtr0083824 1 1 1 84 3R 15801130 15801151 GATGGAATCTATCTCAGTTTGG 58 15801195 15801590 TCCCAAGTACATTAACTCCT 57 NA Drosophila melanogaster 50 CG7720 FBgn0038652 FBtr0083678,FBtr0083679 3 2 2 111 3R 14587405 14587423 CAGACAGTGACCATTCTGG 59 14586865 14587330 AGTTGAGACGTCCATTGTC 59 NA Drosophila melanogaster 50 CG31122 FBgn0051122 FBtr0083653 3 1 1 84 3R 14234395 14234413 GGAGAACCTCAATCTGGAC 59 14234151 14234350 CTCGTAGATGAATTGATTGAGC 59 NA Drosophila melanogaster 50 htl FBgn0010389 FBtr0083548,FBtr0083550,FBtr0083549 2 3 3 60 3R 13873007 13873025 GAATCTCACACTGGTGGTC 59 13872965 13872986 CAAGTCCGATAGATATTTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS33 FBgn0038426 FBtr0083316 1 1 1 60 3R 12262127 12262146 GAACTACCTCTCAAATCGCA 59 12262086 12262104 CATGGACTTCTCGTTTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gish FBgn0011253 FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333 1 6 8 90 3R 12118541 12119712 CTATTAGGATCACATGCCGA 59 12119765 12119783 AAACCATGGCATTGTAACG 59 NA Drosophila melanogaster 50 Mhcl FBgn0026059 FBtr0083231 2 1 6 127 3R 11895061 11895595 AACAGCCCGAGAATAACAG 59 11894952 11894973 GTTAACTCCATCCTAGTAGACG 59 NA Drosophila melanogaster 50 mor FBgn0002783 FBtr0083238 1 1 1 110 3R 11795960 11795978 AATCCCATTATGTCCACCG 59 11795806 11795886 CACCTCATCCTTAATGGCT 59 NA Drosophila melanogaster 50 CG31461 FBgn0051461 FBtr0083166 3 1 1 82 3R 11546614 11546633 AATTATTCGTGTACGAGCTC 57 11546677 11546696 AATTCGATCAGGTATTGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31461 FBgn0051461 FBtr0083166 1 1 1 66 3R 11546565 11546583 AAACAGAAGCCTGAAGTCC 59 11546611 11546631 GCTCGTACACGAATAATTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eff FBgn0011217 FBtr0083018 3 1 1 120 3R 10560129 10563151 GGAGATGATTTATTTCACTGGC 59 10559527 10559545 CTTTGGGTGGTTTAAAGGG 58 NA Drosophila melanogaster 50 CG31326 FBgn0051326 FBtr0082901 1 1 1 80 3R 10045403 10045421 TATTCCAACAATACCGCCC 59 10045284 10045359 GGCTTAGGATATACACCGC 59 NA Drosophila melanogaster 50 CG9920 FBgn0038200 FBtr0082917 2 1 1 74 3R 9923385 9923404 AATACGGTGGAACTAAGGTC 59 9923330 9923348 TAGCAAGGATATCGCTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31517 FBgn0047199 FBtr0082864 3 1 1 147 3R 9774637 9774655 AAATGCCATCAGAAATCGC 59 9774849 9774868 ATCTTTGGTCATCTCGACAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Dip-B FBgn0000454 FBtr0082832,FBtr0082833,FBtr0082831 3 3 3 261 3R 9609662 9609680 ATTCGACAAGTCCTTCGAC 59 9609972 9610047 TTGAATGGGCACATAAAGC 58 NA DesignRelaxed Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 1 8 8 283 3R 9504401 9504476 ACACGACGTAAATCAGGAG 59 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082805 1 1 8 85 3R 9488692 9488710 ATCATCCTCTCGTTATGGC 58 9488759 9491190 TGTAATCCTTGAGATCGCG 59 NA Drosophila melanogaster 50 CG33098 FBgn0053098 FBtr0082580,FBtr0082579 2 2 3 123 3R 8213638 8213708 AGCTGAAGGAAGTCTTCTC 58 8213795 8213813 ATCATCTGTTCCAGTAGCT 57 NA Drosophila melanogaster 50 CG10005 FBgn0037972 FBtr0082507 3 1 1 176 3R 7801293 7801311 ATAGAACCATACACCTGGG 58 7801025 7801155 GTGCTAATTTCCTGTACTCTG 58 NA InUTR Drosophila melanogaster 50 CG32852 FBgn0052852 FBtr0082449 1 1 1 61 3R 7468090 7468108 TACAGCAAACCAAAGACAG 57 7468047 7468065 CTGCCCGTTCTTACTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14712 FBgn0037924 FBtr0082418 2 1 1 118 3R 7455336 7455354 AGAATCGACCCATATTGCA 58 7455436 7455517 CTGTTGCGTATCTTCAGTG 58 NA Drosophila melanogaster 50 CG6782 FBgn0037912 FBtr0100465,FBtr0100462,FBtr0100461,FBtr0100464 1 4 4 236 3R 7386647 7386665 GTTAAGAAGACGGTGGGAG 59 7386370 7386388 CTTCACCTTGATGGTCTCC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 pros FBgn0004595 FBtr0089718 3 1 3 147 3R 7202932 7203770 CTCCTACTTCTTCTACATTGAC 57 7203878 7203896 CATTTCACCAATTGTGCTG 57 NA Drosophila melanogaster 50 CG6608 FBgn0037852 FBtr0082334 2 1 2 66 3R 6707330 6707349 AACCGACCGAGATAATAGTG 58 6706827 6707302 TTAAGTATCATGCTCCACGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG31477 FBgn0051477 FBtr0082180,FBtr0113408 3 2 2 64 3R 5947865 5947883 AGCCATGTGAAGTTCACTC 59 5947911 5947929 TCACGTTCTACCTTCTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33784 FBgn0053784 FBtr0091785 2 1 1 100 3R 5894013 5894032 CCGACTTAGTTTACGATGGA 59 5894150 5894171 GTCATCATTCAGAACCATTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210 3 5 8 82 3R 5834567 5835034 TCTACGAAGGTTCAAACCG 59 5834503 5834521 GAGTCGGTGGATATCTCAG 58 NA Drosophila melanogaster 50 CG8147 FBgn0043791 FBtr0082060,FBtr0100522 3 2 2 60 3R 5321943 5321962 AGAAAGAACGATATCTTCGG 57 5321985 5322003 CATATGGAAGATCATCCGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8359 FBgn0037634 FBtr0081919 3 1 1 60 3R 4632461 4632479 AAAGGAACTGAGTTTCCTG 57 4632503 4632521 CAAGGATTCTACATCGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8036 FBgn0037607 FBtr0081882,FBtr0081881,FBtr0081883 3 3 3 189 3R 4499021 4499107 GATCACTACCAGCAAGGAG 59 4499259 4499278 CCTAATCCTTGAGGATCTCG 59 NA Drosophila melanogaster 50 CG9667 FBgn0037550 FBtr0081815 2 1 1 145 3R 3951660 3951739 CAGATACAGAATGCTGGCT 59 3951533 3951551 AACATCTTGGGACCATAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG15186 FBgn0037448 FBtr0081674,FBtr0081673,FBtr0081672 2 3 3 97 3R 2319011 2319029 AGTTAACCAGATCCCTGGA 59 2319089 2319280 CAACTCGTCCATATTTGCAG 59 NA Drosophila melanogaster 50 CG1236 FBgn0037370 FBtr0078721 1 1 1 60 3R 1563269 1563287 CGGACTTAATCGTAGTCTG 57 1563311 1563329 GTGGCATTGAAGATTTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31550 FBgn0051550 FBtr0113409 2 1 3 220 3R 1312396 1312417 CCTAAGCCACAAATAAATCTGG 59 1312598 1313566 ATAAAGAAACCTTGTGGCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG16708 FBgn0037315 FBtr0078804,FBtr0078803 1 2 2 124 3R 1185797 1185815 CTCCCGTTACAGTCATCTG 59 1185263 1185710 GCAAATTGCGAATATCACCA 59 NA Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0110933 1 1 15 143 3R 1119478 1119796 AAGTATTCTCAAGCTCGCC 59 1119353 1119371 CATAGGTCATGTGACCCTC 59 NA Drosophila melanogaster 50 CG12173 FBgn0037305 FBtr0078821 3 1 1 118 3R 1081338 1081418 CGGATATTCCAGGAGAAGC 59 1081238 1081256 CGGAATCAACTCGAATCCA 59 NA Drosophila melanogaster 50 CG12582 FBgn0037215 FBtr0111225,FBtr0078964 3 2 2 130 3R 24474 24492 AAGACTCGTCCTATATGCT 57 24643 24739 TTACGACTTTCCCATTTGG 57 NA Drosophila melanogaster 50 CG41451 FBgn0084014 FBtr0111176 3 1 1 75 3L 22958320 22958338 GTGGACACAGTGTAAATGC 59 22958377 22958395 GGTCTCGTAAGCTTATCCA 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Mes2 FBgn0037207 FBtr0078563,FBtr0078561 1 2 3 67 3L 22939650 22939668 CGATGTCATCAGAGAACGA 59 22943660 22943678 TATGGCCATAGGTTGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 jim FBgn0027339 FBtr0078582,FBtr0100184,FBtr0078581 2 3 3 122 3L 22792357 22792375 CCCTCTTACTTCAAGGACG 59 22792193 22792211 CTTAAACTCCTTGTCGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Hem FBgn0011771 FBtr0078510 3 1 1 60 3L 22279435 22279455 CTAGGGTGGTAGATAACTTGG 58 22279395 22279414 CAGAAGATACTGAGATCCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7139 FBgn0027532 FBtr0078487,FBtr0078486 2 2 2 60 3L 22061030 22061049 CATTAAGAACAGGGTGAAGG 58 22060932 22061007 ATTAACTTCTTGCCATCGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 mub FBgn0014362 FBtr0078469,FBtr0078468,FBtr0078470 1 3 4 154 3L 21914291 21914309 GAGATTCGCCAAATATCCG 58 21914425 21918297 GCAGTCTCCATTGATATTCTC 58 NA Drosophila melanogaster 50 CG33291 FBgn0053291 FBtr0078427 2 1 1 111 3L 21658719 21658737 CTTCTTCCAGCTAGAGGGA 59 21658811 21658892 ATTGGCGTTATAGACCTTGG 59 NA Drosophila melanogaster 50 CG5976 FBgn0036999 FBtr0078200,FBtr0078199 1 2 2 60 3L 20468718 20468737 TCTATCCGATAAGCTACACC 58 20468759 20468778 CACAACTCGAGGTATAAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32221 FBgn0052221 FBtr0074883 3 1 1 60 3L 19828244 19828263 CGCAACCGTATTTATTGAGG 59 19828286 19828304 CTCTTGTAGTTACGCACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14095 FBgn0036870 FBtr0074987 2 1 1 138 3L 19457373 19457391 TCCAATCCTGAACAGAGTG 58 19457253 19457271 ATAGTTCAAAGGTGCTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MESR6 FBgn0036846 FBtr0075026 2 1 1 60 3L 19086983 19087001 GAACGAATTCCTAACGGAG 57 19087025 19087043 AAAGTCGAGGTCTATGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 1 8 8 118 3L 16956803 16956821 AAGACCCATTGAAGGTAGC 59 16956901 16956979 CAATAGACCCTTGTGAATCAC 58 NA Drosophila melanogaster 50 Cpr72Eb FBgn0036618 FBtr0075383 1 1 1 60 3L 16358183 16358201 TTCGGATACGATCAGTCAG 58 16358225 16358243 GTAACCATAGGCGTACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13070 FBgn0036586 FBtr0075462 1 1 1 63 3L 16256843 16256861 AACCAGAACGGATTGAAGG 59 16256888 16256906 TCATTGGGCTTGAATAGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32152 FBgn0052152 FBtr0075489 2 1 1 60 3L 16136081 16136099 ATCACGGTCATGAATGGTC 59 16136039 16136058 TGATGCCATCTACTTTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5389 FBgn0036568 FBtr0075446 1 1 1 201 3L 16091482 16091656 TAGTGCTGGAGGTATTCCA 59 16091821 16091839 AAATCCGACTTGACCTCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6151 FBgn0036533 FBtr0075543,FBtr0075541,FBtr0075542 2 3 3 63 3L 15809067 15809087 CCGTGGTATCTCAAATATGGA 59 15806715 15809042 AAAGAATGGCAAAGAAGGC 58 NA DesignRelaxed Drosophila melanogaster 50 Toll-6 FBgn0036494 FBtr0075614 3 1 1 60 3L 15331428 15331446 GCTCTTCTCGAATCTGGAC 59 15331469 15331488 GGAGGTTATCTGGTTCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7255 FBgn0036493 FBtr0110881,FBtr0100360 2 2 3 132 3L 15301821 15301841 TTTAGAGTTCCCTTTGTACCG 59 15301933 15302038 CAAGAAATACGGGTATACCCA 59 NA Drosophila melanogaster 50 CG13460 FBgn0036471 FBtr0114510 1 1 1 60 3L 15054491 15054509 GTGTCCAACAACATCTTGC 59 15054449 15054468 ATCCATAGGATCCATAGTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100042,FBtr0100039,FBtr0100040 2 3 6 60 3L 14206288 14223279 TGACTACGATTATAGGCTGG 58 14223301 14223320 CTGTGTATCTGACAGATCGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG10743 FBgn0036376 FBtr0075814,FBtr0075813 3 2 2 103 3L 13507881 13507899 CTGCTATGAGGACAATTGC 58 13508025 13508045 GCATCTTTAGGTTTAGCTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG33265 FBgn0053265 FBtr0076063 2 1 1 60 3L 11961459 11961480 ATTCCTGACACATCTACTACTG 59 11961420 11961438 CAACAGTGCTACTTTCGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 byn FBgn0011723 FBtr0076039 1 1 1 84 3L 11927630 11928077 GCAACATCTCATCTCATAACTC 58 11928122 11928140 TGATGAATGGTGTAGCTGG 59 NA Drosophila melanogaster 50 Bmcp FBgn0036199 FBtr0076115,FBtr0076114 3 2 2 120 3L 11715617 11715692 TATTGATGTAATCCGGACGC 59 11715775 11715793 CTGTACAGCACAGTCTAGG 59 NA Drosophila melanogaster 50 path FBgn0036007 FBtr0076427 2 1 2 136 3L 9492179 9492274 TTAACATAGTGGACAGCGG 59 9490251 9490270 ATCAAAGTCATTTCCAGCCA 59 NA Drosophila melanogaster 50 CG4484 FBgn0035968 FBtr0076503 3 1 1 67 3L 9196708 9196726 TGGTGGCTAGATATCATGC 58 9196599 9196619 CTGTTTCAGTGGTACTATCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG4911 FBgn0035959 FBtr0076542 2 1 1 101 3L 9063737 9063815 CCTACAATGAAGAGATAAGCAC 58 9063657 9063675 GATCGCGTAAATCGTTGTC 59 NA Drosophila melanogaster 50 Fhos FBgn0052030 FBtr0076577 1 1 2 86 3L 8790315 8791227 ATCGCAAATCATTACGTCG 58 8791274 8791295 CCTAATAGGTTTGTATCAAGGC 58 NA Drosophila melanogaster 50 CG6638 FBgn0035911 FBtr0076651 3 1 1 160 3L 8568786 8568804 AGAAACTAGGTGCTCTTGG 58 8568542 8568560 ATTGATGCACAGATTGGAG 57 NA DesignNoJunction Drosophila melanogaster 50 Idh FBgn0001248 FBtr0114548 3 1 9 287 3L 8353912 8353933 GCTCTAACATTCTAAATTCGGC 59 8350919 8350937 TTGGCTCTTAATGGAGTCC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG8281 FBgn0035824 FBtr0076748 3 1 1 68 3L 7905729 7905747 ACGGATTGAAGGTGATGTC 59 7905779 7905797 TGTATGTCTGGATGAAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pbl FBgn0003041 FBtr0076773,FBtr0076774 3 2 5 160 3L 7895366 7896304 ATGGAAACTCATTCTGGGA 58 7895150 7895242 GATTGACCAGCTTTGTCAG 58 NA Drosophila melanogaster 50 RhoGEF4 FBgn0035761 FBtr0076885 2 1 2 81 3L 7315586 7315662 GTTGAAAGAATCCGTCAAGG 59 7315524 7315543 ATACTGGGTAATTTCCTGCT 58 NA Drosophila melanogaster 50 CG14823 FBgn0035734 FBtr0076908,FBtr0076905 2 2 4 190 3L 7060746 7060764 TGCCACGGATAATATTCCG 59 7061142 7061160 CATAGCTACGCACAATACG 58 NA DesignNoJunction Drosophila melanogaster 50 Lcp65Ae FBgn0020640 FBtr0077056 1 1 1 87 3L 6131091 6131109 TTGGAATCCGATGTTGGAC 59 6130962 6130980 ACTTCAACTGTCCCTTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sif FBgn0085447 FBtr0112712,FBtr0112708,FBtr0114646 1 3 8 116 3L 5661233 5661801 TCTATTGAGTTCGTTCAGGT 58 5661880 5661898 ATGCAGGTGATGTTAACAG 57 NA Drosophila melanogaster 50 CG10635 FBgn0035603 FBtr0077154 2 1 1 236 3L 5360788 5360806 CATGGATGACTTCAAAGCG 59 5360570 5360588 ATTTCCGCCTTGATAACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10671 FBgn0035586 FBtr0077178,FBtr0077177 3 2 2 61 3L 5137876 5137894 TACTATCACCGCATGATCG 59 5137833 5137851 AAGTACCAGGTGAGTATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Src64B FBgn0003501 FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321 2 5 5 158 3L 4596190 4596208 ATCTGAGCTTCATGAAGGG 59 4595932 4596069 TCTCAAAGAACCAGTCTTCG 59 NA Drosophila melanogaster 50 CG33764 FBgn0053764 FBtr0091765 2 1 1 100 3L 4267161 4267244 TTAGCAAAGTAAAGGTGCG 58 4267079 4267097 CGATGTTAGGAATCTGCAC 58 NA Drosophila melanogaster 50 CG14998 FBgn0035500 FBtr0113135 2 1 6 98 3L 4127159 4128322 TGTTAGTGAATGCAGGCTC 59 4127079 4127097 ACATGTTTGTCGATGTGGA 59 NA Drosophila melanogaster 50 CG14984 FBgn0035480 FBtr0073169 3 1 1 109 3L 3951476 3951759 AATCGAAGAGTCTCGTCAC 59 3951385 3951403 GGCTATATCCGATACCGTG 59 NA Drosophila melanogaster 50 CG32264 FBgn0052264 FBtr0113431,FBtr0113430,FBtr0073188 3 3 5 138 3L 3718987 3722173 CAATAACTATTCGCTCAACAGG 59 3718870 3718888 GTAGACGATATGGCCATCG 59 NA Drosophila melanogaster 50 CG12187 FBgn0035367 FBtr0072945 3 1 1 224 3L 2678605 2678623 TATTCACGACGTGGATTCG 59 2673271 2673591 TTCCACTCGAGTATCTTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG11815 FBgn0035299 FBtr0072852 2 1 1 68 3L 1971110 1971129 TGTCTAAGAATCCACTTCGA 58 1971061 1971079 ACTTGGGCTTATCAGACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13925 FBgn0035291 FBtr0072838 2 1 1 68 3L 1921630 1921648 TGTAGAAAGCATCGAGGAG 58 1921680 1921698 ATATCGGCGACTATTTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12099 FBgn0035232 FBtr0072829,FBtr0072828 1 2 2 94 3L 1556339 1556357 CTTGCCTTTGACTTGTCAG 58 1556209 1556282 GAATGTCCTCCTTAAAGAGC 57 NA Drosophila melanogaster 50 Aplip1 FBgn0040281 FBtr0072626 2 1 2 115 3L 1197304 1197538 AACAAGAAATGTGGCTCCA 59 1197617 1197635 TTGAGGGACAGAAATGAGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 RabX6 FBgn0035155 FBtr0072577 2 1 1 60 3L 690715 690733 CTTCATCACGGATACGGAC 59 690756 690775 GTATTCCCTATCGATGTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3344 FBgn0035154 FBtr0072609 3 1 1 72 3L 686599 686618 GTACAGGTTGATGTCCAGAG 59 686493 686511 CACATCGAATTTCACGAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17090 FBgn0035142 FBtr0072552,FBtr0072551 2 2 2 105 3L 569806 569887 CGGAATATGAGGTCCTTGAG 59 569954 569973 TTCTTCAGGATCTTGATGGC 59 NA Drosophila melanogaster 50 Kaz1-ORFB FBgn0063923 FBtr0072488,FBtr0100851,FBtr0072493,FBtr0072490 1 4 6 110 3L 217695 217713 AGTACAATCCAATCTGCGG 59 217866 217884 GACAAATTCCCTTGTGCAC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG30424 FBgn0050424 FBtr0113375,FBtr0113377,FBtr0113376 3 3 3 98 2R 20853307 20853383 TACTTCGGGAATTCAGTCAC 59 20853228 20853246 TTGAAGTGGTCTTCAGTCC 59 NA Drosophila melanogaster 50 bs FBgn0004101 FBtr0072271 1 1 1 202 2R 20235972 20262944 GAGGACTCGAAAGATGACC 59 20263110 20263128 TGATAGTTCAATGCTGGCA 59 NA DesignRelaxed Drosophila melanogaster 50 Nop60B FBgn0023184 FBtr0072258,FBtr0100213 3 2 2 86 2R 20064279 20064298 TTATGTCGACTACAATGCCA 59 20064347 20064426 CTTAACTTGCGTTTGCTGG 59 NA Drosophila melanogaster 50 tamo FBgn0041582 FBtr0072281,FBtr0072282 3 2 2 152 2R 20017461 20017544 CTCTCAAGACCTATTCGGG 58 20017327 20017346 AAACATTCGTAACCTGATCC 57 NA Drosophila melanogaster 50 G-salpha60A FBgn0001123 FBtr0072144,FBtr0072142 3 2 3 86 2R 19833781 19833984 CCAAGTGACGCAATAATGG 59 19834032 19834132 AGATATACGCAGAAACTCGTC 59 NA Drosophila melanogaster 50 CG5597 FBgn0034920 FBtr0072131 2 1 1 83 2R 19775910 19776008 CCACCATCACGATAATATCCA 59 19776053 19776071 CATCGAAGTATCCCTCCTC 58 NA Drosophila melanogaster 50 CG5357 FBgn0034862 FBtr0072017 1 1 1 78 2R 19345167 19345185 GGAGTCCAACCAGTTTACC 59 19345227 19345245 ATACTGCAGGAACTTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30194 FBgn0050194 FBtr0071954,FBtr0071955 2 2 3 96 2R 18946730 18946748 ATATGCCGCATTGATATCC 57 18946808 18946884 AAAGAGGGCTACAGTATCC 58 NA Drosophila melanogaster 50 CG32835 FBgn0052835 FBtr0071992 3 1 1 208 2R 18841030 18841048 GAAATCTTGACGGTAGCGA 59 18839410 18839429 TTAATCAAGAGATGCAGCGA 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 jbug FBgn0028371 FBtr0071917 2 1 3 90 2R 18607247 18607266 TTCCGGTCAGATGTTATCAG 59 18607112 18607194 TGGAGTACCTCAATGACAC 58 NA Drosophila melanogaster 50 CG10384 FBgn0034731 FBtr0071831 1 1 1 60 2R 18359023 18359042 GCGTACTTGTACTTGTACTC 58 18359063 18359083 ACAGTTAGTCCCTAAAGATCG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 a FBgn0000008 FBtr0071763,FBtr0100521,FBtr0071764 3 3 3 83 2R 18025734 18025753 ATCGAGAACATCAACCACTC 59 18039198 18050428 GCATACTATGTTGGTGTTTCAC 59 NA InUTR Drosophila melanogaster 50 CG30280 FBgn0050280 FBtr0071759 1 1 1 102 2R 18001831 18001849 TCTCCACATATGATCGGGA 59 18001915 18001995 TTAAGGTTGCTGTCCAGAC 59 NA Drosophila melanogaster 50 Sara FBgn0026369 FBtr0071641,FBtr0071642 3 2 2 117 2R 17373767 17373847 ATTATTAAGTGCGAGGACTGG 59 17373926 17373944 AAAGATCGAGAAGTGGCAG 59 NA Drosophila melanogaster 50 CG13436 FBgn0034532 FBtr0086229 3 1 1 80 2R 16525007 16525084 GGAGCTTATATTTCCGCAC 58 16525127 16525146 AACTCAACAATGTGGTTCAG 58 NA Nonspecific Drosophila melanogaster 50 bl FBgn0015907 FBtr0086219,FBtr0086221,FBtr0086220,FBtr0086222 2 4 4 67 2R 16493081 16493099 GTCATGATCCCAACAACAG 58 16493192 16493210 CTTACCAATGATGGCACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG8517 FBgn0034472 FBtr0086329 3 1 1 101 2R 15601690 15601708 TAGAAGATTATTCCGGGCA 57 15601773 15601791 TTTCTAGTCTCCACATCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp56b FBgn0046880 FBtr0086480 2 1 1 60 2R 15586427 15586445 AAGAGTTTGCTTACCAGCT 59 15586385 15586403 TGTAGACAAAGTCACAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457 3 11 15 114 2R 15365199 15366254 CTTTCACTCTGGTCAAACC 58 15366332 15366350 GAGTTTGGAGAAGAAGCTC 57 NA Drosophila melanogaster 50 Scs-fp FBgn0017539 FBtr0086552,FBtr0086553,FBtr0086554 3 3 3 136 2R 15280457 15280475 CTGAAGATGCAGAAGACCA 59 15280283 15280358 CAGATAAGCGACCTATCGAC 59 NA Drosophila melanogaster 50 CG18604 FBgn0034378 FBtr0086606 2 1 1 61 2R 14591365 14591383 CTCCAGTAATGTCACTGCA 59 14591520 14591538 GATTGAAGGCATATCGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 Gint3 FBgn0034372 FBtr0086656,FBtr0086654,FBtr0086655 2 3 3 106 2R 14546145 14546222 ATGACTGCAAACTCATTCC 58 14546057 14546075 CAGCATTAGAAGGTCTTCC 57 NA Drosophila melanogaster 50 slim FBgn0026173 FBtr0086692,FBtr0086693 3 2 2 158 2R 14331578 14331597 TTGAAACGTATCCCGATCAG 59 14331858 14331876 AATATGTGGAGAAGTCGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18536 FBgn0034322 FBtr0086758 3 1 1 109 2R 14182690 14182764 TGAGGAAACGATGGTTGAG 59 14182834 14182855 TGATGTAATCATAGAAGGGCTG 59 NA Drosophila melanogaster 50 sbb FBgn0010575 FBtr0086767,FBtr0086766,FBtr0086765 1 3 3 132 2R 14175232 14175640 CAAATACGAAACAACTAGCTGG 59 14175121 14175140 CCAATATTCCACTCGTCCTC 59 NA Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 2 8 8 98 2R 14032393 14032483 CAAGGAAAGAATTCTGAGAAGC 59 14032542 14032560 AATCATCGGATACAGACGC 59 NA Drosophila melanogaster 50 stau FBgn0003520 FBtr0086783,FBtr0086784 1 2 2 110 2R 14007896 14007979 CAAGAAACCAGCAAAGAAGAG 59 14007806 14007824 TTGCTATTCTCCTCAGCTG 59 NA Drosophila melanogaster 50 CG6424 FBgn0028494 FBtr0086887,FBtr0086886 1 2 2 121 2R 13592685 13593866 TCGAGCAGAATTTGAACGA 59 13592582 13592600 CTCAAAGTACAGCAGTCCA 59 NA Drosophila melanogaster 50 CG10936 FBgn0034253 FBtr0086894,FBtr0086895 3 2 2 113 2R 13494136 13494155 TGCTACCATTAAGATCATCG 57 13493972 13494060 TAAACTTCGTTGAGCTGTG 57 NA Drosophila melanogaster 50 CG30463 FBgn0050463 FBtr0113379,FBtr0113381,FBtr0087113 1 3 5 162 2R 12566519 12566537 CAACATTTATCCCGAGCTC 58 12562745 12565926 CATCCAGTACTGATTTCCTC 57 NA Drosophila melanogaster 50 RpS15 FBgn0034138 FBtr0087124,FBtr0087123 2 2 2 100 2R 12458179 12458197 CATGATCATCGTACCCGAG 59 12457856 12457874 GGTAGTGACCGATCATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Syn2 FBgn0034135 FBtr0087093,FBtr0087094,FBtr0087097 1 3 5 86 2R 12442916 12442934 ATCAGTCGCAGTTGTAGTC 59 12442984 12443123 CATCATTAGAGGTACGGCA 58 NA Drosophila melanogaster 50 Syn2 FBgn0034135 FBtr0087095,FBtr0087096 1 2 5 118 2R 12442744 12443115 TCCTTCAGAAACAACTACCTC 59 12443195 12443213 GACACCTGTGGAAATTCCA 59 NA Drosophila melanogaster 50 Hmgs FBgn0010611 FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146 3 5 5 60 2R 12227690 12227708 CAGAAGGATACTTCCAAGC 57 12227731 12227750 TGTGGAATAGGATAGCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8446 FBgn0034089 FBtr0114472,FBtr0114473 1 2 3 175 2R 12086286 12086305 CAATCCCACAGAGAAATGGT 59 12086443 12086521 TCATTAATCCCGCTTCCAC 59 NA Drosophila melanogaster 50 CG8445 FBgn0034088 FBtr0087246,FBtr0087245 3 2 2 211 2R 12083401 12083419 CAAATATGAACGCTGCTGG 59 12083149 12083226 CTGTACATCGTGACATCCA 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 mRpL34 FBgn0083983 FBtr0111011 2 1 1 71 2R 11986724 11986742 GGAATGCTAGGATGTCGAC 59 11986777 11986795 AATTGTGACGTCCTTTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30084 FBgn0083919 FBtr0113484,FBtr0111048,FBtr0100387,FBtr0087315 2 4 6 94 2R 11652754 11660562 TAATAATGTGTACCGAGGTGC 59 11652680 11652699 CTGCCTTATTCAGGATACCC 59 NA Drosophila melanogaster 50 Vha36 FBgn0022097 FBtr0087335 2 1 1 67 2R 11429525 11429543 ATCAAGATCACCAACCGTC 59 11429574 11429592 AAAGTCCTATCGATTCGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GalNAc-T1 FBgn0034025 FBtr0087332,FBtr0087331 3 2 2 206 2R 11401758 11401907 CTTCCATCCTTACAAATTCCC 58 11402075 11402093 TTCTTGAGGTACCACTCGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG34123 FBgn0083959 FBtr0114580,FBtr0114579,FBtr0110833,FBtr0113485 2 4 6 80 2R 11152374 11152394 ACGACTATATGATTCTGGAGG 58 11152253 11152333 ATACACCAATCTCGAATCCC 59 NA Drosophila melanogaster 50 Obp51a FBgn0043530 FBtr0087420 3 1 1 62 2R 10912066 10912084 GTGTGGTAACACCATTCGA 59 10912022 10912043 CATACTTATCATAGCTCTCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10249 FBgn0027596 FBtr0087429,FBtr0112929,FBtr0087431,FBtr0087430 3 4 4 90 2R 10790219 10790298 GACAGTAATGGCAACACAG 58 10790147 10790166 CATCGCAAACCTTAGAATCC 58 NA Drosophila melanogaster 50 CG8233 FBgn0033897 FBtr0087582,FBtr0087584,FBtr0087583 3 3 3 84 2R 10037317 10037743 TTTGTTCCTCACAATGATGC 59 10037252 10037270 GAGTTATCACCTTTGGCAG 58 NA Drosophila melanogaster 50 CG30485 FBgn0050485 FBtr0087640 1 1 1 60 2R 9738414 9738432 TCAAGGGCACAAACTATGG 59 9738456 9738474 TTCTCACTACTGGTCACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17034 FBgn0033837 FBtr0087707,FBtr0087710,FBtr0087709 1 3 4 146 2R 9303454 9305088 CTCTGCACATATTCACGGA 59 9303067 9303085 TAATGATAGACTGCGGCAC 59 NA Drosophila melanogaster 50 CG17041 FBgn0033822 FBtr0087749,FBtr0087751,FBtr0113080,FBtr0087750 2 4 4 222 2R 9151041 9151059 GATAATGTGGCAAGACCCT 59 9151379 9151397 GTTCTCAATGGTGTTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Nmda1 FBgn0013305 FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876 3 6 6 93 2R 8765642 8765662 GACGAACTTCATATTCTTGGG 58 8765511 8765587 CATGAGAACCTCTTTCGGA 58 NA Drosophila melanogaster 50 CG17574 FBgn0033777 FBtr0113077,FBtr0113078 2 2 4 160 2R 8739051 8739069 ATGATTCGGGCATCTACTG 59 8738404 8738423 CATTCTCGATAAGTCAGGGA 58 NA DesignNoJunction Drosophila melanogaster 50 sca FBgn0003326 FBtr0087855,FBtr0087856 2 2 2 60 2R 8687283 8687503 AATGAAGAATAAGCTCACCC 57 8687526 8687544 GACATTCTGATGATGTGGT 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 S2P FBgn0033656 FBtr0088063 2 1 1 114 2R 7730976 7730996 TACTACATCACAACCCTTGTG 59 7730815 7730903 GGCAGAAGATGAACTTTATTCC 59 NA Drosophila melanogaster 50 dare FBgn0015582 FBtr0088176 2 1 1 119 2R 7179486 7179560 TGCTTTGAAGACTACGGAC 59 7179385 7179403 TCCTTAATGGTGAAGGCAG 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 3 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421093 TAGTAAGGTAGCAAAGTAGGGA 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 3 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421093 TAGTAAGGTAGCAAAGTAGGGA 59 NA Drosophila melanogaster 50 Cyp49a1 FBgn0033524 FBtr0088311,FBtr0088313 1 2 3 80 2R 6343081 6343099 CTTATTCGGAAGTACCGGG 59 6342946 6343040 TGTATGTTCCTATTAGTGGAGC 59 NA Drosophila melanogaster 50 CG33774 FBgn0053774 FBtr0091775 3 1 1 168 2R 5287558 5287765 AAAGAACGTGTTACTGTCTG 58 5287330 5287348 CTGTTAGCGGAAACATCCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG30349 FBgn0050349 FBtr0088650 2 1 1 95 2R 4796440 4796458 CAAGGAACCAAACTGAGTG 58 4796517 4796591 TTGTATCATCGCCTGATCC 59 NA Drosophila melanogaster 50 CG8740 FBgn0027585 FBtr0088712,FBtr0088713,FBtr0088711 3 3 3 195 2R 4644841 4644859 ACTATCGATATCTCGCTGC 58 4645018 4645093 ATACATTGAGCTCCTTGGG 59 NA Drosophila melanogaster 50 Dgk FBgn0085390 FBtr0112581,FBtr0112580 2 2 4 80 2R 3738268 3738288 CCATTGTTAACCAGATGATGG 59 3736488 3738226 TCATCTCTTGCAGTATCGG 58 NA Drosophila melanogaster 50 CG1358 FBgn0033196 FBtr0088950,FBtr0088949,FBtr0088948 1 3 3 80 2R 3490154 3490638 TTGGATAAAGTGGGTCTTCG 59 3490093 3490111 CGAGAAGACCTTGATCCAG 59 NA Drosophila melanogaster 50 Cyt-b5 FBgn0033189 FBtr0088906,FBtr0088905 2 2 2 67 2R 3423029 3423047 GAGAGTTCTGTGAAGTCGT 58 3423078 3423096 AACTTGTAGAAGAGCGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111092,FBtr0111098 2 2 60 124 2R 3219879 3221904 TGAAAGTGAAGGTACCTCC 58 3219773 3219792 TTTCTTCCATGTAACTTGGG 57 NA Drosophila melanogaster 50 pwn FBgn0003174 FBtr0088962 2 1 1 80 2R 3186192 3186210 AGGTGAACAACATCTACCG 59 3186254 3186331 TTTCATCCAGCTTGATGGT 59 NA Drosophila melanogaster 50 CG1845 FBgn0033155 FBtr0089021 1 1 1 205 2R 3162387 3162601 ATCAATAGAAGAACCGCCA 58 3162200 3162218 GACAGGACGTGATTCAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG11060 FBgn0033149 FBtr0089045 1 1 1 60 2R 3065135 3065153 CCAGAACTTCTCTTACCGA 58 3065176 3065195 ATATAAGTCCTTGAGAGCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 coro FBgn0033109 FBtr0086208,FBtr0086209,FBtr0086207 1 3 3 139 2R 2752071 2752153 TCGGTATTTCGAGGTAACG 59 2751950 2751968 GATAGAACTTGGCGACCTC 59 NA Drosophila melanogaster 50 CG8343 FBgn0040502 FBtr0085988 1 1 1 60 2R 2067467 2067485 GCTCGTAAGCATTACATCC 58 2067508 2067527 GTAGTTGAAGAGGAAGTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 EcR FBgn0000546 FBtr0086008,FBtr0086010,FBtr0086009 1 3 5 105 2R 2039492 2039582 ACTTGATGTTACCGAGGAC 58 2039405 2039423 GTTGTAGCTGTGATTCTGC 58 NA Drosophila melanogaster 50 mle FBgn0002774 FBtr0086031,FBtr0100576,FBtr0086030 2 3 3 83 2R 1864960 1865499 CCTGCATGTTATTCTTATGTCG 59 1864898 1864916 GGTACTTCCAATACGGGAC 59 NA Drosophila melanogaster 50 CG1344 FBgn0027507 FBtr0086034 2 1 1 60 2R 1543253 1543274 CATGATGAACAGGATGATAAGG 58 1543294 1543313 AAAGCGTTGATACATTCGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41121 FBgn0069930 FBtr0111251 3 1 2 121 2L 22708253 22708272 GAGTAGTGATGTATCTCCGC 59 22708356 22709162 GAACGTGGTCTAAAGAACG 58 NA Drosophila melanogaster 50 CG3651 FBgn0032974 FBtr0085937 3 1 1 142 2L 22123550 22123569 GTATACTGCTATGGAGGTCC 58 22123674 22123751 TGATTGAGGAGCTGTAGAC 58 NA Drosophila melanogaster 50 CG31700 FBgn0051700 FBtr0085933 1 1 1 94 2L 22066975 22066993 TAAGGACTACCGGGTAGAC 59 22069218 22069236 TTGTCCTTAATGGCATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2201 FBgn0032955 FBtr0100510,FBtr0085921,FBtr0085922,FBtr0100511,FBtr0085923 1 5 5 83 2L 21615151 21615169 GTCTCATCTGTTCTGGAGC 59 21615024 21615105 CGAGCAATACCATATTCCCA 59 NA Drosophila melanogaster 50 His2A:CG33856 FBgn0053856 FBtr0091860 1 1 1 60 2L 21523779 21523798 GAATTATTCCGCGTCATCTG 59 21523821 21523839 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His2A:CG33817 FBgn0053817 FBtr0091821 1 1 1 60 2L 21458276 21458295 GAATTATTCCGCGTCATCTG 59 21458318 21458336 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr39a FBgn0041244 FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510 3 4 4 99 2L 21297474 21297492 AAGAACCTTCGACAGAAGC 59 21297607 21297627 CCATATACGTGAAGATTGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9331 FBgn0032889 FBtr0081421,FBtr0081420,FBtr0081417,FBtr0081418,FBtr0081419 1 5 5 64 2L 20826944 20826962 CTGTGCTGGTTAACATTGC 59 20827051 20827069 TTTCAAAGCCTCGTAGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31677 FBgn0051677 FBtr0081407 2 1 1 61 2L 20603980 20603999 TGTGGTTATCAATATGGCCA 59 20603938 20603956 TGTATCTCAGCTGATGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vls FBgn0003978 FBtr0081347 2 1 1 96 2L 20064569 20064641 CAGTTATTAATCAATGGGCCC 59 20064493 20064511 TGTAGATGAACTCATGGCC 59 NA Drosophila melanogaster 50 sNPF FBgn0032840 FBtr0081327,FBtr0081326 2 2 2 93 2L 20055044 20055062 GAAGTCCGTAAACCAATGC 59 20055185 20055203 GGATGGATGAGGTTTCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13965 FBgn0032834 FBtr0081308 2 1 1 60 2L 19962080 19962100 TCCATCGGAGAATTAACTCAG 59 19962040 19962058 TTGTTGGTGATTCTGTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18094 FBgn0032791 FBtr0081243 1 1 1 60 2L 19491276 19491294 CTGCTCTATGACATCGCTC 59 19491318 19491336 AGAAGTTGAGAAGCTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18563 FBgn0032639 FBtr0081003 2 1 1 60 2L 17457296 17457315 CAACAAATGAACCCATTCAG 57 17457255 17457273 CCTTCATGTCTCACAATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6860 FBgn0032633 FBtr0080969,FBtr0080968 1 2 2 80 2L 17372753 17372772 GTCATTTGGCCAACTATGTG 59 17372627 17372713 CCATTGTCAACTTATTGACACC 59 NA Drosophila melanogaster 50 CG32832 FBgn0052832 FBtr0080960 3 1 1 106 2L 16878867 16879025 TTTAAATGGTCCTTGGTGC 58 16878779 16878797 CAAATTAAGCCCGTGACTG 59 NA Drosophila melanogaster 50 chif FBgn0000307 FBtr0080838,FBtr0080839 3 2 3 60 2L 16347755 16347774 CAGATACAGTATCTCCTCCG 58 16347714 16347732 TTCCTTAGTTTCTGCTTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spel1 FBgn0015546 FBtr0080630 3 1 2 101 2L 14364513 14364531 TCCATTCTTGGAAGAGTGG 58 14364595 14364690 AGTGGCAGTCCTTATTATGC 59 NA Drosophila melanogaster 50 loqs FBgn0032515 FBtr0080497 3 1 3 236 2L 13383871 13383889 GCTCGATACTCAACTACCG 59 13385050 13385068 CATAGGTCACCTCGAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 Sfmbt FBgn0032475 FBtr0080492 2 1 2 121 2L 13175761 13175779 GTAGTCAGTACAACTCGGA 58 13175268 13175676 ATTCATGTCCAAAGTTGGC 58 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090013,FBtr0090027 1 3 17 90 2L 12731059 12737970 TCTTTATGGTTCTGGCTACC 59 12738023 12738041 AAGTAGTACAGGAAGGCGA 59 NA Drosophila melanogaster 50 JhI-21 FBgn0028425 FBtr0089655,FBtr0089656 1 2 2 110 2L 12054491 12055096 TATTTACACCGAATCCGTGG 59 12054400 12054418 GATCTTGTGATGCATGTGC 59 NA Drosophila melanogaster 50 CG31720 FBgn0051720 FBtr0113413,FBtr0089788 1 2 2 71 2L 10236397 10236415 ATACTCAGTACTGCGTGGA 59 10236226 10236244 TCTTGAAGCGAATCCTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13125 FBgn0032163 FBtr0079898 3 1 2 109 2L 9924157 9924307 GATACGGTAGAAGGCATCG 59 9924066 9924084 ACATAGAGGGACAATGGGA 59 NA Drosophila melanogaster 50 Bka FBgn0010520 FBtr0079874 3 1 1 61 2L 9895478 9895496 GTAATGCACAGCTTAAACG 57 9895520 9895539 TCGAATCTGATCCTTAAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4036 FBgn0032149 FBtr0079870 2 1 1 60 2L 9791081 9791099 GCATGGTCCTACTGTATCC 59 9791123 9791141 GGACATGATTGGTATCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mcr FBgn0020240 FBtr0079543 3 1 1 107 2L 8075846 8075927 GTATCGAGATTCCAGATGC 57 8075757 8075775 GGAACTTCTCAATGTCCAC 58 NA Drosophila melanogaster 50 Rapgap1 FBgn0085403 FBtr0112605,FBtr0112603 1 2 4 149 2L 7501515 7536282 TTTCTCAGAACCACCATCG 59 7501384 7501402 TCGAGTGATTCATCGAGTG 59 NA Drosophila melanogaster 50 CG31909 FBgn0051909 FBtr0079406 2 1 1 92 2L 7257997 7258016 GAGAAATCGTAGAGAACCCA 58 7258071 7258089 AAGCGTCTACTTCATCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snRNP70K FBgn0016978 FBtr0079355 1 1 1 65 2L 6970353 6970373 GATTTCCGTGATATGGATGTC 58 6970308 6970326 AAATGTGGGATAGCCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9171 FBgn0031738 FBtr0079162,FBtr0079161 3 2 2 117 2L 5770099 5770117 ATTCTGGCTTCAGACATCG 59 5769931 5770019 CCAATGGAAATACTCTGGGT 59 NA Drosophila melanogaster 50 CG14021 FBgn0031702 FBtr0079078,FBtr0079079 3 2 2 111 2L 5331345 5331363 CAAGCTGATCATATGCGAC 58 5331189 5331272 CAGCTTGTTATCTGGATACAG 58 NA Drosophila melanogaster 50 CG7742 FBgn0031690 FBtr0079092 2 1 1 88 2L 5213324 5213400 GCTACATGACTACGATATTGAG 58 5213257 5213275 CCTTGAAGACCAGTTTGTC 58 NA Drosophila melanogaster 50 ine FBgn0011603 FBtr0077447,FBtr0077448,FBtr0077446,FBtr0077449 1 4 4 106 2L 4468742 4468760 AAGACTGTCGAAGAACGTC 59 4468589 4468672 ATACCCAGATGGCAAAGAG 59 NA Drosophila melanogaster 50 RpL27A FBgn0010410 FBtr0077452 3 1 1 95 2L 4457497 4457748 GTTAAATTCGGCTACTACAAGC 59 4457423 4457441 GTCCTCAGCCTTCTTAGAG 58 NA Drosophila melanogaster 50 for FBgn0000721 FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305 2 4 10 180 2L 3626210 3634251 TATGTCATGGAAGATGGACG 59 3626049 3626067 TGATGGTCTGAAAGCACTG 59 NA Drosophila melanogaster 50 CG3104 FBgn0031473 FBtr0077687,FBtr0077686 3 2 2 285 2L 2852250 2853261 TGTCGCTTAAGAAGGAGAC 59 2850468 2850486 ATCAGAATCTTCACCACGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG31948 FBgn0051948 FBtr0077788,FBtr0077787 1 2 2 60 2L 2415611 2415629 CAACTATGAGATCGTGGCT 59 2415569 2415590 GCAGTGATTCTCAATGTATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3557 FBgn0031423 FBtr0077790 1 1 1 60 2L 2385091 2385109 TAAGGGAACAGATAAGCCG 58 2385049 2385067 TCTTTCAGCTGTTGACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4267 FBgn0031405 FBtr0077751 1 1 1 80 2L 2242932 2243566 CGTCATCAAACAAGGATAGTC 58 2243607 2243626 GTATGCGTTCTTAACCTTCC 58 NA Drosophila melanogaster 50 CG18131 FBgn0031343 FBtr0077935,FBtr0077936,FBtr0077937,FBtr0077934 1 4 6 62 2L 1500147 1500167 GCCAGCTTATATCTAATGACC 58 1500037 1500123 ATATGTTGACTTGAGTGGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG5397 FBgn0031327 FBtr0077920 2 1 1 60 2L 1241657 1241675 CCAATTGTCTCGGAAACAG 58 1241699 1241717 CGATCTCATCACCATGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3662 FBgn0031285 FBtr0100469,FBtr0078012 2 2 2 99 2L 823319 823337 CATTATCGACACTACCACC 57 823397 823418 GCTCATCTTCTTTATGAGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11885 FBgn0031253 FBtr0078089 1 1 1 77 2L 421333 421351 AACAAACCTCGACAAATCG 58 421274 421292 GTGGAACACTATCTCCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Adaptin FBgn0015567 FBtr0089488,FBtr0089489 3 2 2 81 2L 411176 411195 CTATTCGTGAGGAAATGGTG 58 411046 411132 ATAACGTCCACATACCAGG 58 NA Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 2 7 8 166 2L 119224 119295 TAATGCAGACTGATGTCCTG 59 119020 119038 TTGAGCCATGGTGTTTAGG 59 NA InUTR Drosophila melanogaster 50 D2R FBgn0053517 FBtr0091462,FBtr0070033,FBtr0100196,FBtr0091461,FBtr0070034 2 5 5 81 X 19905532 19905553 TATAGCCATGGATGTGATATGC 59 19905400 19905490 TGTCACAGCGATGTATCTG 59 NA Drosophila melanogaster 50 tgy FBgn0030984 FBtr0074702 3 1 2 146 X 19020803 19020821 GATTGGTTCATAAAGGCGG 58 19020312 19020399 CATGTATGACTCGTTCTTCTG 58 NA Drosophila melanogaster 50 Rbp2 FBgn0010256 FBtr0074281,FBtr0074280,FBtr0074279 3 3 3 259 X 16344026 16344045 ACTTTGAGGTGAAGTACGTG 59 16344401 16344419 CTTCTGGAAACCGTCTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33178 FBgn0053178 FBtr0073963 3 1 1 131 X 14977061 14977297 GTTTCCGGTATAAGATCTTTCC 58 14977540 14977558 AATACGGCAGAATGTTCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG14408 FBgn0030581 FBtr0073991,FBtr0073990 1 2 4 107 X 14722054 14723176 TTCAGCAGATCTTCAGAGC 59 14721965 14721985 GAGTTCCTCCACTATAATGGC 59 NA Drosophila melanogaster 50 CG11590 FBgn0030545 FBtr0073899 3 1 1 60 X 14094666 14094686 GTCGAGTCTATCTACAAGTGG 59 14094705 14094726 TCATCAACAGATATTCGGAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sno FBgn0005410 FBtr0073736,FBtr0112848,FBtr0112849 1 3 4 97 X 13093002 13093092 ATCTACGGCTAAAGGTGTC 58 13092923 13092941 TCTCATCGTAGAGACCCAG 59 NA Drosophila melanogaster 50 CG4404 FBgn0030432 FBtr0073694 3 1 1 122 X 12799064 12799660 ATATCAAGGACACGGTTCG 59 12798960 12798979 TCGATAGGTAGTATTTGCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32702 FBgn0052702 FBtr0071370 1 1 1 80 X 9458595 9458673 CTCCTATAACTACGAGCACC 59 9458534 9458553 TGGAATTTGCTTGGAAAGTG 59 NA Drosophila melanogaster 50 CG34026 FBgn0054026 FBtr0100081 2 1 1 93 X 9428052 9428131 AGTCGGACAACCTAAATGC 59 9428188 9428206 CCTCCACTGACCAATACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17717 FBgn0029877 FBtr0070944,FBtr0070943 1 2 2 157 X 6484266 6484349 TATCATCTTGCAGCAGGTG 59 6484470 6484488 GCATAAATCGTGTGGTGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12535 FBgn0029657 FBtr0070534,FBtr0070535 2 2 2 184 X 3287219 3287237 GGAACATGTTCCAATTGCT 58 3286920 3287071 GAGATCGTTACGATTCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13759 FBgn0040376 FBtr0070437 1 1 1 60 X 2477586 2477604 CAGAAGATCTTTCGTTCCC 57 2477627 2477646 TATACTTGCTGTAGGGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3690 FBgn0040350 FBtr0070185 2 1 1 98 X 844062 844080 CCAACAATCTGATTGTGGC 59 843917 844002 GTCCACTGGTCATTATAAGCT 59 NA Drosophila melanogaster 50 CG40188 FBgn0058188 FBtr0113822 3 1 2 171 U 2233171 2233189 ACAGACGAGATCTCTTTGC 59 2233323 2233403 ATTACATTGCAAAGGTTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG40162 FBgn0058162 FBtr0113815 1 1 1 69 U 588244 592700 AATCTCATTCGAGACGGAG 58 588193 588211 CCAAATCGTTGTTAACGCA 59 NA DesignNoJunction Drosophila melanogaster 50 ncd FBgn0002924 FBtr0085534 3 1 1 116 3R 25631523 25631541 ACAACGAGTGTCTTCAGAG 59 25631366 25631444 CTTTCTCATGTATTGCTTGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG31076 FBgn0051076 FBtr0085079 2 1 1 61 3R 22814874 22814952 CTATAGCAACTACATTGCACAG 59 22814834 22814852 GAACCAGTCCATGATCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5028 FBgn0039358 FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290 1 5 5 106 3R 21507753 21507830 AACTACGGTGACCATTACG 59 21507900 21507918 ATACTGGCACTGATCATGG 59 NA Drosophila melanogaster 50 Ets96B FBgn0039225 FBtr0084696 2 1 2 164 3R 20618822 20618840 AAGACGTCACCTATACCAC 58 20618968 20620056 TTTGACATTCACGTTGCAG 59 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100632,FBtr0100623,FBtr0100629,FBtr0100624,FBtr0100633,FBtr0084683,FBtr0100638,FBtr0100635,FBtr0084685,FBtr0084684,FBtr0100627,FBtr0100631,FBtr0100636,FBtr0100634,FBtr0100622,FBtr0100625,FBtr0100637 3 17 17 85 3R 20532015 20532266 CCATGATAACAGAACTGGTC 57 20532311 20532332 CAGATAGAGTTCTGTATCTGGA 58 NA Drosophila melanogaster 50 CG10232 FBgn0039108 FBtr0084471 3 1 1 67 3R 19545577 19545662 GATATACCCACGAAATTCTACC 58 19545531 19545550 CAATGGGTGATTATGCAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5391 FBgn0038943 FBtr0084242 1 1 1 163 3R 18159404 18159703 CACAAATGATCCTGCTGAG 58 18159259 18159277 GTTGTAGTTCCCAGTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17274 FBgn0038835 FBtr0083989,FBtr0083990 2 2 2 165 3R 16678290 16678432 CTTTGTTACAACAGGGAGG 57 16678143 16678161 TGATTCAAATAGTCCACGC 57 NA Drosophila melanogaster 50 CG5466 FBgn0038815 FBtr0083913 2 1 1 61 3R 16445306 16445324 CTCGTTGGACCAGATTACC 59 16445349 16445600 TTGAGTCCAGATTGGAACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5614 FBgn0038359 FBtr0083171 2 1 1 60 3R 11605814 11605832 CAATCAATCGGAGGATCAC 57 11605854 11605874 GAGGAACTCCATAATCATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14868 FBgn0038330 FBtr0083109 1 1 1 75 3R 11194555 11194631 CAAGACAATGTTGGATGCA 58 11194498 11194516 AATGGTGTCCTCATTTGTG 57 NA DesignNoJunction Drosophila melanogaster 50 Ravus FBgn0038128 FBtr0082779 2 1 1 62 3R 9088905 9088923 CACCATAACGCCTATACAC 57 9088861 9088879 AGTTGATAAGATTGCAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31278 FBgn0051278 FBtr0082319 3 1 1 98 3R 6533656 6533675 CTCAGGATCATAGCAATGGA 58 6533506 6533595 AATAGTCAGTGGCAACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp12e1 FBgn0037817 FBtr0082249,FBtr0082250 2 2 2 115 3R 6260566 6260584 GATCTACCAGCTATGCAGG 59 6260743 6260836 AATTCTTATAGAGACCGCCC 58 NA Drosophila melanogaster 50 CG9839 FBgn0037633 FBtr0081934 2 1 1 98 3R 4630978 4630996 GGAATTGGAACAGCAAGAG 58 4630833 4630917 TAGTCATCCATATCGTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha-Est4 FBgn0015572 FBtr0081546 3 1 1 134 3R 3363829 3363847 GATGGTCTACATCCATGGA 58 3363651 3363731 CTGAGGAAACCTAAGGGTC 58 NA Drosophila melanogaster 50 CG1965 FBgn0037466 FBtr0081634 1 1 1 112 3R 2896837 2896855 TCTGGTTGTTACCGAACAG 59 2896929 2897004 GCTGGATTGCATAAAGATTGG 59 NA Drosophila melanogaster 50 CG10277 FBgn0037442 FBtr0113198,FBtr0081722,FBtr0081720,FBtr0081721 2 4 4 89 3R 2211842 2211860 AACAAGTACGACACCTGTG 59 2211913 2212068 CGTGTGATAGGGATGTGAG 59 NA Drosophila melanogaster 50 CG31550 FBgn0051550 FBtr0078685,FBtr0113409,FBtr0078684 2 3 3 246 3R 1314708 1314728 ACTAAAGGAGGACAACATTGG 59 1314989 1315100 ACGTGGATTGTTCAAAGGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG6838 FBgn0037182 FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186 2 4 4 89 3L 22709293 22709406 GTCAGTAAGGATCCAAACC 57 22709222 22709240 ATTAAGCAGATTCACGCTG 58 NA Drosophila melanogaster 50 CG32437 FBgn0052437 FBtr0078344 3 1 1 60 3L 21352235 21352253 TATGGAACTGCTGAGTCTG 58 21352277 21352295 CTTGTCTGTTTCCATCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rdgC FBgn0004366 FBtr0074834,FBtr0074832,FBtr0074833,FBtr0074835 2 4 4 81 3L 20254920 20254938 GTTTCCCAACAAGTTACGG 58 20254983 20255058 GAAGACCGTTCTTATGCAG 58 NA Drosophila melanogaster 50 Prestin FBgn0036770 FBtr0075153 2 1 1 80 3L 17893992 17894069 GGAATTGTAAACCTCCTAATGG 58 17893933 17893951 GAATCCATTCACCAGAGGT 58 NA Drosophila melanogaster 50 CG5567 FBgn0036760 FBtr0075161 1 1 1 69 3L 17835657 17836392 TAATAACCGACTGCGATGG 59 17835606 17835624 TTCATCACATCCACAGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mbf1 FBgn0026208 FBtr0075394,FBtr0075393 1 2 2 234 3L 16568068 16568296 AACAGAAGTATGGTGCTGG 59 16568863 16568881 AAGTTGTTTGGAATACCGC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 gdl FBgn0001099 FBtr0091757 2 1 1 62 3L 15503331 15503723 GGTTAATGACCAACAATCCA 58 15503748 15503766 TTCTCGGTGACATAGAAGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17177 FBgn0036440 FBtr0075710 3 1 1 82 3L 14692404 14692787 CAATCGGGAGATAATTCACC 58 14692341 14692359 CAGTGAACTCACCTTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14118 FBgn0036323 FBtr0075870 3 1 1 199 3L 12885952 12886434 TTCATCAAGGTTCTCCCTG 58 12886596 12886615 ATCCAAAGACTCTCCATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PGRP-LA FBgn0035975 FBtr0076434,FBtr0076432,FBtr0076435,FBtr0076433 2 4 4 148 3L 9330628 9330646 CATTACCTTTATGGGCGAC 58 9330758 9330841 TTCTGGTCACCTTAGTCTG 58 NA Drosophila melanogaster 50 CG8539 FBgn0035791 FBtr0076831 1 1 1 69 3L 7491071 7491089 ACGGGCTGTAATGTATCTC 58 7490937 7491038 TGTATCGTAGACCCAAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32387 FBgn0052387 FBtr0076920,FBtr0076919,FBtr0110848 1 3 3 81 3L 7160238 7160335 GGCAGATCCTTTGTTTGTG 59 7160175 7160193 GAGGTTCTCGATCATTGCA 59 NA Drosophila melanogaster 50 CG10274 FBgn0035690 FBtr0113149,FBtr0077018 3 2 2 92 3L 6173195 6173281 GGTTTGTGGAAAGAAGTTTCTC 59 6173124 6173142 CGGTAGGTCTCAATAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scrt FBgn0004880 FBtr0073165 3 1 1 89 3L 3985479 3986530 ATGTTTACAACGGCTACAC 58 3986583 3986601 CACGGATCACGGTTATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14959 FBgn0035427 FBtr0073049 3 1 3 137 3L 3267287 3267442 GATCTTTCACATGTGCGAC 59 3267541 3267678 TTCAGTAATCTTACGGGTGAC 59 NA Drosophila melanogaster 50 CG1271 FBgn0035392 FBtr0072989,FBtr0072986,FBtr0072988,FBtr0072987 3 4 4 65 3L 3053679 3053697 GTTTGTACGATCCGTTCAC 58 3053725 3053801 TTGAATTGATGCCGAATAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG9149 FBgn0035203 FBtr0072667 2 1 1 261 3L 1303909 1303928 AAGGATGAGTACATCAAGGC 59 1304212 1304286 TTTGAAGCAATGCTTCCAC 59 NA DesignNoJunction Drosophila melanogaster 50 E(bx) FBgn0000541 FBtr0072522,FBtr0072523,FBtr0072521 3 3 3 88 3L 245466 245936 GAAGGAAAGGGTACGAGTC 59 245396 245417 CAGCATATCATCCTCATTATCG 58 NA Drosophila melanogaster 50 CG16971 FBgn0035114 FBtr0072498,FBtr0072497,FBtr0072496 3 3 3 233 3L 224178 224985 GTGAAGTCGCAAACATGTG 59 225766 225785 GTTTCTTGTTTGTGTTCCGT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 tRNA:CR30449 FBgn0050449 FBtr0086333 1 1 1 60 2R 15616796 15616814 GTCTAGTGGTTAGGCTACC 58 15616837 15616856 CCTATACAGGGAACTGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2790 FBgn0027599 FBtr0072409 1 1 1 83 2R 20835324 20835342 TTTATCCTACGCAAGGTGG 59 20835198 20835277 TAAGTTGCGAACCTCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nurf-38 FBgn0016687 FBtr0072343 3 1 1 81 2R 20447405 20447424 AAAGTCAATGATATCGCCGA 59 20447288 20447364 TCTTGTAGATCTTGAACCACTC 59 NA Drosophila melanogaster 50 LBR FBgn0034657 FBtr0071713,FBtr0071711,FBtr0071712 1 3 3 88 2R 17608832 17609380 GGTATCATCGCCTATTCGT 59 17609432 17609450 TAAATGCTTTGTTCGGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Xpd FBgn0015844 FBtr0071577,FBtr0071576 2 2 2 84 2R 17060260 17060279 TACTCGATTTCGATCCAGTG 59 17060324 17060407 CCCTTCGATACAATCATAGGA 58 NA Drosophila melanogaster 50 Ate1 FBgn0025720 FBtr0086319,FBtr0086318,FBtr0086317 3 3 3 106 2R 16142992 16143010 CTACATACACTCCTGTCCC 58 16142845 16142922 CACGAATAACATCGGTGAG 58 NA Drosophila melanogaster 50 Obp56i FBgn0043532 FBtr0086337 2 1 1 78 2R 15755673 15755749 CATGTTTCGTACAAGCAGG 59 15755791 15755809 CGATTCGCAACATCTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14495 FBgn0034293 FBtr0086810 2 1 1 74 2R 13936871 13936890 CAAATCTGCGATACATTGGT 58 13936732 13936834 GTCGAGGTTATGGATTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9002 FBgn0050462 FBtr0100120 3 1 2 205 2R 12884668 12884686 AGAAACTGGATGTGAAGGC 59 12884218 12884499 GATCGTGTTGTAGCATCCA 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 Ef1beta FBgn0028737 FBtr0087041 1 1 1 133 2R 12755779 12755798 TGTTAAACGCGAATTTACCC 59 12755894 12756011 CTTGCTGGGAGTATATCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4398 FBgn0034126 FBtr0087157 1 1 1 60 2R 12320221 12320239 AATCGAGTTCAGAGTTCAC 57 12320263 12320281 GTTAGTATTTCACGCACGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16935 FBgn0033883 FBtr0087622 1 1 1 98 2R 9748784 9749140 ATTCAGGGTAAATACCCGG 58 9748704 9748722 AAAGCCTTTGACTTTGTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8888 FBgn0033679 FBtr0088022 1 1 1 89 2R 7954204 7964575 TTCTATCACTTCGTCAAGGT 58 7954134 7954152 TTTCTTGGCCAAGTACCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7637 FBgn0033548 FBtr0088252 1 1 1 84 2R 6698258 6698341 TTTACACCCTGAAGAAACG 57 6698192 6698210 GAGTACTTATCCTCCGGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hig FBgn0010114 FBtr0088608,FBtr0100119,FBtr0088606,FBtr0088607 3 4 4 153 2R 5122075 5122093 AGTACGGAAATCAGTCGAG 58 5120228 5121958 TCGTAGATACCCTTGTCCT 58 NA Drosophila melanogaster 50 CG8738 FBgn0033321 FBtr0088705 1 1 1 104 2R 4584623 4585168 ATCAGATAGAGGAGGGTCG 59 4585236 4585254 CATCCAGCTGGTAGTAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LvpL FBgn0002571 FBtr0088758 3 1 1 68 2R 4343797 4343815 CATTGGTCCAAATGTGCTG 59 4343682 4343700 TTGATGAGGGTGATGTACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30375 FBgn0050375 FBtr0088799 3 1 1 102 2R 4153885 4153904 TAAATGACATAGCCTTGCTC 57 4153745 4153820 TAGTTGAAGCTGTTCTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12159 FBgn0033232 FBtr0088888,FBtr0088889 1 2 2 60 2R 3803437 3803455 GTGGGAATCACCAGTACTG 59 3803016 3803414 AAAGTCGGAGCCTATAAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30438 FBgn0050438 FBtr0086068,FBtr0086067,FBtr0086069,FBtr0086070 3 4 4 84 2R 1436213 1436231 TACTGGACCGAATATGTGC 59 1436278 1436349 AGTAGTATTGCCACCATGTC 59 NA Drosophila melanogaster 50 CG41484 FBgn0084044 FBtr0111243 1 1 1 60 2L 22759095 22759116 CAGACTACAAATTCCACAACTG 59 22759136 22759155 CTAAGGTTGCGATTCTTTCC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9246 FBgn0032925 FBtr0081472 2 1 1 105 2L 21164687 21164764 ATAACCAGGAAACAGCAGG 59 21164833 21164851 TTCCTGGTAAAGTGTTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 msb1l FBgn0027949 FBtr0081258 1 1 1 276 2L 19577967 19578050 CTTTAACCTTCTTGCAGGC 59 19578290 19578308 TCCTCTAAATCCACTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10337 FBgn0032805 FBtr0081276 1 1 1 60 2L 19546119 19546203 GGTATAATCGGTTGTGCTC 57 19546077 19546095 TGAAATACAGCGGAAGACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17549 FBgn0032774 FBtr0081221 1 1 3 80 2L 19388089 19388109 TCATCGATCCGTATCTATTCC 58 19387926 19388049 CAGTTATAGCTTGTTGGTTGG 59 NA Drosophila melanogaster 50 Rpb11 FBgn0032634 FBtr0081011 1 1 1 81 2L 17409917 17409935 ATTATTCTCCGCAGGAAGC 59 17409792 17409872 TCTTTGAAACGCTCTTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG31812 FBgn0051812 FBtr0080890 3 1 1 80 2L 16730216 16730291 CTTATCTACAAGCAAAGTCCTC 58 16730331 16730350 ATAGTGATCCGTATCACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab14 FBgn0015791 FBtr0080627,FBtr0080628,FBtr0080626 2 3 3 268 2L 14357452 14357535 AATTCATGGCCAATTGTCC 58 14357819 14357839 GTTGCCAATGAGAAAGATCAC 59 NA DesignNoJunction Drosophila melanogaster 50 aret FBgn0000114 FBtr0080345,FBtr0080347,FBtr0080344,FBtr0080346 1 4 4 120 2L 12298741 12298823 ATTAAAGTGACCCTGAGCC 59 12298907 12298925 GATTGGCCTGAATTTGCTG 59 NA Drosophila melanogaster 50 Mt2 FBgn0028707 FBtr0110911 1 1 2 86 2L 12096646 12096713 TATGCCCAATTGGATGGAC 59 12096763 12096781 ATTACTGCCGTAATTGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)06225 FBgn0010612 FBtr0110872,FBtr0110873 3 2 3 270 2L 10976161 10976268 GATCAGGACTTGTGAACAG 57 10975909 10975927 TTGTAGCCTACAATGTGAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6724 FBgn0032298 FBtr0080191 3 1 1 129 2L 10768574 10768659 GATCCTAGGACAAACCAGG 59 10768463 10768481 TGTTCTGGTTGTCATAAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG3430 FBgn0031875 FBtr0079350 1 1 1 284 2L 6958282 6958360 CCCAAAGAAGGATTATGAGAC 58 6958671 6958690 TTAGAATCGGCATTAATGGG 57 NA DesignNoJunction Drosophila melanogaster 50 Tango1 FBgn0031842 FBtr0079296,FBtr0079295 3 2 2 84 2L 6652433 6652504 TCATTAGAAAGGGATCTGGA 57 6652551 6652569 CATTCTGACCGTTAAGGAC 57 NA Drosophila melanogaster 50 TpnC25D FBgn0031692 FBtr0079063 3 1 1 133 2L 5218740 5218758 TTACATCACCACCTCAACG 59 5218852 5218935 CCATGAATTCATCAAAGTCCAC 59 NA Drosophila melanogaster 50 CG15443 FBgn0031609 FBtr0077450 1 1 1 61 2L 4462559 4462637 TAAGGAGCTAACTGGACCT 59 4462516 4462534 GATTACACAAGCACTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Slh FBgn0015816 FBtr0077783,FBtr0077782 2 2 2 300 2L 2492401 2492493 AATGCCATTAAGCAGATGC 58 2492062 2492080 GAGCTAGGAAGTTCAGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34049 FBgn0054049 FBtr0100104 3 1 1 89 2L 2264695 2264776 CAGATCATTTGGCTGATCTG 58 2264625 2264643 AGAATTTGGATCTCCGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RFeSP FBgn0021906 FBtr0077915 2 1 2 129 2L 1613144 1613162 AGTCGGTTACTTTCAAGTG 57 1612978 1613051 ATCACACGTTGATCATCAG 57 NA Drosophila melanogaster 50 CG5556 FBgn0031332 FBtr0077948 3 1 1 63 2L 1352725 1352743 CCGGGTATTAGCTATTGCA 59 1352624 1352698 TATAGACATGACGCGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13692 FBgn0031254 FBtr0078057 1 1 1 103 2L 422186 422261 GCAGCATAATACTAAGATCCTG 58 422325 422343 TTTGCAACTTCTGCATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spen FBgn0016977 FBtr0078123,FBtr0078121,FBtr0078122 3 3 3 105 2L 199480 199499 AGATTATGCCAGGAAGTGTG 59 199567 199646 GTGCGTATACCAGCTACTG 59 NA Drosophila melanogaster 50 snoRNA:Me18S-U1356c FBgn0082947 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 sol FBgn0003464 FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676 2 4 4 83 X 21228148 21228166 AGAGCTACAATGTGGTGTC 59 21228210 21228300 GAACGATGATTACTTGTCTCTG 58 NA Drosophila melanogaster 50 eas FBgn0000536 FBtr0074213 1 1 5 80 X 16174011 16175018 GTCTAAGAAGAATGTTCGTCAG 58 16175059 16175077 TTCAATTGGTTCTGGACCT 58 NA Drosophila melanogaster 50 CG33178 FBgn0053178 FBtr0073963 3 1 1 227 X 14976956 14976974 GCGATATGTTTACCCTGGA 59 14977529 14977549 GAATGTTCTCCATGTCATTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1537 FBgn0030260 FBtr0073394 3 1 1 63 X 10956384 10956402 ATTGTGCAACTTCAAGTGC 59 10956277 10956295 GTAGATGAACTCGCAAGTG 58 NA DesignNoJunction Drosophila melanogaster 50 His3.3B FBgn0004828 FBtr0071345,FBtr0071347,FBtr0071346 3 3 3 219 X 9048446 9048465 AGGATTTCAAGACCGATCTG 59 9048107 9048125 ACGACAGTGATCGAATCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 3 12 15 240 X 6978842 6979199 CTTTGTTCGGTACAACAAGC 59 6978621 6978640 AATTGATCTACCTCTGTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 inx7 FBgn0027106 FBtr0071035,FBtr0071034 2 2 2 92 X 6886132 6886221 TGTGCTTCTACAGAAATGTC 57 6886059 6886078 CAATTACCGCCAATAATTCG 57 NA Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 2 13 13 80 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567130 2567220 TGTATTGAGAGCTCATGCTC 59 NA Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 2 13 13 80 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567130 2567220 TGTATTGAGAGCTCATGCTC 59 NA Drosophila melanogaster 50 pck FBgn0013720 FBtr0070256,FBtr0070255 3 2 3 84 X 1365310 1365329 TTTAAGGACTTCGTGTACCC 59 1365376 1365453 TAACGTAATACTCGTGCGA 58 NA Drosophila melanogaster 50 elav FBgn0000570 FBtr0114366,FBtr0070091,FBtr0100254 1 3 3 60 X 412385 412404 AGTAGGCTTTATTCGATTCG 57 412344 412362 GTTCAAGGCAATGATAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5815 FBgn0027574 FBtr0085106,FBtr0085107 1 2 2 127 3R 22939850 22939868 ATGTTCAGAGATCACAGGG 58 22940019 22940039 CTCAGAATCGTATTCATCCTC 57 NA DesignNoJunction Drosophila melanogaster 50 spz FBgn0003495 FBtr0085146,FBtr0085143,FBtr0112834,FBtr0085139 3 4 12 139 3R 22892376 22892851 TCTTTAATAGGACGGACACG 59 22892129 22892147 GTCATTCCTCAAAGGACGA 59 NA Drosophila melanogaster 50 CG4553 FBgn0039336 FBtr0084839 3 1 1 72 3R 21302480 21302498 TCCTGGACTAGGTTACCAG 59 21302426 21302444 GTAATCCTCGCTAGCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or94b FBgn0039034 FBtr0084342 3 1 1 60 3R 18815060 18815080 TAATCCAACGTTGGATAGGAC 59 18815101 18815120 GTTAATACTCCATCCTCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7079 FBgn0038849 FBtr0084043 2 1 1 60 3R 16873852 16873873 TAAAGATCTACGAGCTAGTTCC 58 16873743 16873763 TTGTCTAGCCACATAATCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Dys FBgn0024242 FBtr0110915 2 1 8 88 3R 15352880 15352898 GAAACGGTTTCCAGATCCT 59 15352950 15380551 CGATTGTAGGTCCTGACTC 59 NA Drosophila melanogaster 50 CG31475 FBgn0051475 FBtr0083735 3 1 1 199 3R 15026238 15026257 TATCGAAGACTTTGGTGGAG 59 15026418 15026508 ATCAGTCATCTCTTTGAGGG 58 NA Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 2 7 12 159 3R 11122418 11125004 GAAATACGATGAGGTTGCC 58 11126526 11126544 CTTCTCCTCAGAGACTTCC 58 NA Drosophila melanogaster 50 Zeelin1 FBgn0038294 FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034 1 4 5 120 3R 11002150 11004014 TACAGCCGAACAATTCCAG 59 11001978 11001996 GCTTGTCCCTCAAGTAGAG 59 NA Drosophila melanogaster 50 desat1 FBgn0086687 FBtr0082630,FBtr0082628,FBtr0082627,FBtr0082626,FBtr0082629 3 5 5 141 3R 8272219 8272237 ATTCTGAACGTAACCTGGC 59 8272402 8272421 AGACGTGATGGTAGTTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12817 FBgn0037798 FBtr0082243,FBtr0110952 3 2 3 114 3R 6049959 6049978 CTCGAAATGATTCAGTCTGC 59 6049756 6049885 CAATTGCCTCTATAAAGTGCTC 59 NA Drosophila melanogaster 50 Fps85D FBgn0000723 FBtr0082053,FBtr0082051 1 2 4 105 3R 5195422 5198485 AACAGCAGATATCGCTCTC 59 5195335 5195353 TCACCATCGTTATTCAGCA 58 NA Drosophila melanogaster 50 CG33937 FBgn0053937 FBtr0091947,FBtr0091946 3 2 2 61 3R 5183110 5183128 TAGGCAGTGTAAAGATGGC 59 5183153 5183171 CTTAGTTACGGCAACATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11367 FBgn0037185 FBtr0078528 1 1 1 104 3L 22725145 22725163 ATTCTTCGCGTCATTTCTG 58 22725229 22725689 GGAACTGATTCCGAATATCAC 58 NA Drosophila melanogaster 50 CG6049 FBgn0037081 FBtr0078400,FBtr0078399,FBtr0078398 3 3 3 80 3L 21414145 21414214 ATCTATGATCGCCATCCTG 58 21414083 21414103 CATCATTTGAATGACGAGGTC 59 NA Drosophila melanogaster 50 BG642378 FBgn0052203 FBtr0110771 3 1 1 60 3L 19121695 19121713 GAGTCGTATATGTCAACCG 57 19121653 19121672 ATGTAAATGGTGCTCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acp76A FBgn0015586 FBtr0075038 3 1 1 60 3L 19044509 19044527 TGGATATGCTTCGAAAGAC 57 19044467 19044485 TTCAAACGAGGACAATGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 2 8 8 121 3L 16956903 16956980 GATTCACAAGGGTCTATTGC 58 16957064 16957082 CATGGATTCCCTCCTTCAG 59 NA Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0112852,FBtr0112851,FBtr0075438,FBtr0075439 3 4 6 98 3L 16057087 16057335 CCCACTAATAATCAAGTTCCTG 58 16057394 16057412 ATCGTTCTCAAAGCTTTGC 59 NA Drosophila melanogaster 50 CG32103 FBgn0052103 FBtr0075982,FBtr0075984 3 2 3 91 3L 12405212 12405292 CTCACCAGAATGGACAAGG 59 12405139 12405157 TCATGAATGTCCGTTGAGG 59 NA Drosophila melanogaster 50 CG6709 FBgn0036056 FBtr0076360,FBtr0113156 2 2 2 60 3L 9886557 9886628 ATGCGATACAAGAAATGGC 58 9886515 9886534 CCAAGTTATTTAGGACCTCG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 shep FBgn0052423 FBtr0077173,FBtr0077174 1 2 4 143 3L 5160146 5161354 CAAATGTTACGGCTTCGTC 59 5157062 5160039 TCCTGTTCCTGTTGAATGG 59 NA Drosophila melanogaster 50 Tie FBgn0014073 FBtr0073323 3 1 1 131 3L 4512758 4512776 CAAACATATTGCCAGCCTC 59 4512583 4512664 CTCGATGAACAATCCTCCTC 59 NA Drosophila melanogaster 50 CG16984 FBgn0062517 FBtr0072928 3 1 1 60 3L 2595897 2595917 GATGAGAATATTCTCGAGTGC 58 2595938 2595957 TTGATTCCTTAGGTCCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1146 FBgn0035346 FBtr0072921,FBtr0072922,FBtr0072923 1 3 3 63 3L 2491992 2492010 CTACTCCATCACCGATCTC 58 2492037 2492055 GATGTACGTGGTCTCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32299 FBgn0052299 FBtr0072898 2 1 1 82 3L 2389944 2389963 TTCAGAGGAATGGATTACCA 58 2389821 2389840 ACTTTGGCTTGATAGTAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7995 FBgn0035266 FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767 1 5 5 120 3L 1743816 1743834 GTCTGGAACTTGACAAACG 58 1743987 1744005 TGATACCGAACGTCTTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3520 FBgn0034859 FBtr0072027 3 1 1 81 2R 19284605 19284681 ATCAGGAGGCTAAGATATACGA 59 19284545 19284563 CTGAAGACATCGGCATAGG 59 NA Drosophila melanogaster 50 CG6393 FBgn0034685 FBtr0071752,FBtr0071751,FBtr0071750 3 3 4 82 2R 17956169 17956254 GATAATTGAATTCCCAGCAGTG 59 17956297 17956315 CGAAGGGAAGGATGTACTG 59 NA Drosophila melanogaster 50 Spt-I FBgn0086532 FBtr0087731,FBtr0087729,FBtr0087730 1 3 3 88 2R 9057266 9057284 TCATCGACGAAAGCATCTC 59 9057336 9057409 ATCGACTTCATCACGATCG 59 NA Drosophila melanogaster 50 CG33752 FBgn0053752 FBtr0091753 2 1 1 60 2R 8433561 8433581 CTTGTCCTTACAACGTAAGTG 58 8433656 8433676 GTCAAGACAAAGTCCTTTACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MCPH1 FBgn0033664 FBtr0088055,FBtr0088056 3 2 2 82 2R 7785972 7786060 ACTCAACAGGATAAGCAGTG 59 7785909 7785927 CTCCACTACCATTGGTTCC 59 NA Drosophila melanogaster 50 CG13230 FBgn0040764 FBtr0088204 2 1 1 88 2R 7042471 7042489 CATCTGTCTGGTCCTTGTC 59 7042541 7042559 CGATTATCTTCTGGATGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lola FBgn0005630 FBtr0089345,FBtr0089343 2 2 26 189 2R 6419762 6419780 TGTTGAGGATTTGACACTG 57 6393565 6419549 CGTAATACTCAGATCTTGGG 57 NA Drosophila melanogaster 50 sut4 FBgn0028560 FBtr0089675,FBtr0089674 3 2 2 60 2R 5973576 5973595 GCCACTATCATTTCGATCCT 59 5973535 5973555 ACACCAATAGGAGTATCTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10194 FBgn0032790 FBtr0081285 3 1 1 60 2L 19489711 19489730 AAGGCAGATAAGAAATCGCT 59 19489608 19489626 TTTCTCGTATGGCAGTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10237 FBgn0032783 FBtr0081207,FBtr0081209,FBtr0081208 1 3 3 91 2L 19437120 19437677 GTCTTCTAGAAGCGGAGAC 59 19437047 19437065 TTCCGGGTAATACTTGCAG 59 NA Drosophila melanogaster 50 CG33309 FBgn0053309 FBtr0080674,FBtr0100163 1 2 2 60 2L 14811306 14811327 TGAATCCCGAGATAGTTAAACC 59 14811347 14811366 GGCGATATCCTTAACTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or33b FBgn0026391 FBtr0080279 1 1 1 60 2L 11936630 11936651 ACATAAGCTATTATATCCCGCC 59 11936671 11936690 AAATATTAGTTCCGTGGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7224 FBgn0031971 FBtr0100151 1 1 2 155 2L 7999077 7999098 GCATAACCGATAAAGGAAATCC 59 7999214 7999232 GAAAGAACGTTAGCATCGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13775 FBgn0031874 FBtr0079363 1 1 1 83 2L 6955192 6955267 TCTCATCTGTGACTATATGCAG 59 6955130 6955148 TGATGTCGCTAGTGATGTG 59 NA Drosophila melanogaster 50 CG3645 FBgn0031238 FBtr0078140,FBtr0078141 2 2 2 84 2L 253880 253963 AGAGATTGTGAGCACACTG 59 253814 253832 AATGGTCTTCTCAAGGTCC 58 NA Drosophila melanogaster 50 CG15604 FBgn0030713 FBtr0074157 3 1 1 134 X 15846073 15847920 ATCAGTCACATGCAGTCAC 59 15845957 15845976 AATATACCCTTCTCTGTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10778 FBgn0029980 FBtr0071131 1 1 1 95 X 7826646 7826664 TGGAAGAATGCCTCTACAC 58 7826327 7826587 ACTGCCACATCATGAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40091 FBgn0058091 FBtr0113789 3 1 1 236 U 141579 171207 TTCGTGTCTCACAGTTGAG 59 135608 135626 AGTTTGCAGCCATAGACTG 59 NA DesignNoJunction Drosophila melanogaster 50 Osi5 FBgn0037413 FBtr0078595 2 1 1 76 3R 2053672 2053690 TATCCTTCTATCTGCGCAC 58 2053730 2054173 TTCTGAAACTTGGGACTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13023 FBgn0036677 FBtr0075307 1 1 1 68 3L 16918067 16918085 GATCACTTGGACATGAAGC 58 16917961 16918038 GGATTGTTGCTTCAATATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Abl FBgn0000017 FBtr0112790,FBtr0075357 1 2 2 80 3L 16621685 16621777 GAGCATCAGTTTGAGATACG 58 16621624 16621642 TGGGTAACGAAGACTTTCC 59 NA Drosophila melanogaster 50 CG34415 FBgn0085444 FBtr0112692,FBtr0112691 3 2 2 72 2R 12837577 12837658 AGAATCCTTTCTCCTGTAGAG 58 12837525 12837543 TTTCCGTATATTCTCCCGT 57 NA DesignNoJunction Drosophila melanogaster 50 Nipped-A FBgn0053554 FBtr0113467,FBtr0091528 2 2 2 82 2R 1091743 1091764 GGAGCATTGGTAAATTCATCTG 59 1091628 1091701 TGGATGTTGGATATGTCGTC 59 NA Drosophila melanogaster 50 CG40169 FBgn0058169 FBtr0100179 1 1 2 98 2L 20238606 20238626 CGCCTTTAAGTCTTCTTTGTC 59 20238685 20245321 AACTGCTCTTCATCAGTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7631 FBgn0028945 FBtr0080754 1 1 1 76 2L 15628888 15628968 TCTGAGGAGTTTGATGCTC 58 15629006 15629026 CGAATACAAGACGAATACTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi21 FBgn0032359 FBtr0080214 2 1 1 124 2L 11284713 11284901 GAACATAACAGACGCAACAC 59 11284608 11284626 TAGTAGCGATACGGATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9662 FBgn0031529 FBtr0077594 3 1 1 84 2L 3376538 3376556 AGATTCAGCATTCCAATGC 58 3376412 3376490 ATATGATACCGCCTGTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:R2:84Fb FBgn0011960 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR32287 FBgn0052287 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi28S-1135f FBgn0083007 FBtr0113568 3 1 1 74 X 17039512 17039530 TGCCATACTGAGCATAACC 59 17039456 17039474 ATATCTTCAGGCACAAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14615 FBgn0031184 FBtr0077369 1 1 1 61 X 21850433 21850451 TTTCAACAAATCCTTGGGC 58 21850390 21850408 GAAAGATCCAGGCAATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DIP1 FBgn0024807 FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370 2 4 4 170 X 21497272 21497350 TTCTTTGCATTATGCGTCC 58 21497120 21497138 GAGAGTTGCACACTTTCAC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG10987 FBgn0040647 FBtr0077263 3 1 1 69 X 20930331 20930349 TTTGATGTCGCAAAGTTCG 59 20930280 20930299 GGAAATGTTATCTTCTGGGC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 r-cup FBgn0031142 FBtr0077270 1 1 2 60 X 20895856 20895874 GAAACATGGTGAGCATCCT 59 20895814 20895832 ACCTTGATATCATTCCGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HERC2 FBgn0031107 FBtr0077299 1 1 1 200 X 20271330 20271418 GGATACAACTGTGAGTCGG 59 20271642 20271660 AAAGTGAGTCAGACGACTG 59 NA Drosophila melanogaster 50 CG15460 FBgn0031104 FBtr0113006 3 1 1 66 X 20261712 20261731 ATATTCCGGAAGAATTGCAG 58 20261665 20261683 GTAGACTGATTGCCCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdc42 FBgn0010341 FBtr0074751,FBtr0074752 1 2 2 63 X 19592047 19592066 GCTCATCTCGTATACAACCA 59 19592092 19592110 ATAGTTGTCGAACACCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CoRest FBgn0053525 FBtr0091484 1 1 5 132 X 19418180 19421613 CTGATAACGATGACAAGTCCA 59 19421758 19421776 TTGATGTACATGCCCTTGG 59 NA Drosophila melanogaster 50 CG14193 FBgn0030994 FBtr0074670 1 1 1 60 X 19084456 19084474 AAGGATGAATCCAAGGAGG 58 19084498 19084516 AATTGTGAACTCCCATGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7358 FBgn0030974 FBtr0074652 2 1 1 226 X 18784509 18784786 AATACTGGCTCAGGTAAGC 59 18784301 18784319 GAATATCGTCATCGCTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG7332 FBgn0030973 FBtr0074647 2 1 1 170 X 18779186 18779204 GTATTCAAGCGTTGGTCTC 58 18779992 18780067 TTTGTCGAGGGAAATCTCC 59 NA Drosophila melanogaster 50 CG12609 FBgn0030952 FBtr0074606 1 1 2 92 X 18641013 18641031 TGAACAGCAGTTAGGAGAG 58 18640886 18640904 GTCAAATGGATGGCAAGTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12609 FBgn0030952 FBtr0074606,FBtr0074605 1 2 2 60 X 18641595 18641613 TGGGAGATCTTTCAGAGAC 57 18641553 18641571 TTGGATACGGAATCACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp308a1 FBgn0030949 FBtr0074604 1 1 1 62 X 18605220 18605299 CATTCATTTAGATCCCGCA 57 18605325 18605343 TTTAGAAAGCGTTCTGGAC 57 NA DesignRelaxed Drosophila melanogaster 50 CCKLR-17D1 FBgn0030950 FBtr0113002 3 1 3 167 X 18619799 18619817 ATTTCATATTCGGCGAGCT 59 18619550 18619570 CATCTTCTTTATCAGCTCCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15043 FBgn0030929 FBtr0074626 3 1 1 60 X 18387765 18387783 CCAACACTTACGAATTCCC 58 18387723 18387741 TTCTCCGGATAGGTAAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wupA FBgn0004028 FBtr0074526,FBtr0074523 2 2 7 80 X 18004586 18004604 AACGCGTATACAGTTTGGA 59 18000952 18004543 TGAGATCGTTGATCTCTTGG 59 NA Drosophila melanogaster 50 CG4991 FBgn0030817 FBtr0074385,FBtr0074384 1 2 2 115 X 16997640 16997660 AGAGGTCTAATAACTGCACTC 58 16997896 16997914 GAACAGATTGAGCTTGGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG13004 FBgn0030797 FBtr0112996 3 1 2 114 X 16721790 16721808 GATCATCTGCGGTTATGTC 58 16721624 16721713 GTTCTGGGAGTTGATATGTG 57 NA Drosophila melanogaster 50 CG4829 FBgn0030796 FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337 3 5 5 93 X 16718722 16718740 CGAGAAGGGATACCATGTG 59 16718794 16718964 CAAATAGATTTGGTACTGCTCG 59 NA Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 3 9 9 111 X 15788792 15788878 AGTTACCGAATATGGCGAG 59 15788952 15788971 TTTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 Myb FBgn0002914 FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169 2 4 5 83 X 15749876 15749894 AGGTCTATAATCGCGTTGG 59 15749747 15749829 GTCCAAGTTGACTCTTGTG 58 NA Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 2 7 7 82 X 15717700 15717788 GATCCATTGCTTGAGACTG 58 15717832 15717852 TCGTAGAGATCTTTAAGTCCC 58 NA Drosophila melanogaster 50 CG32594 FBgn0052594 FBtr0073956,FBtr0073957 3 2 2 104 X 14925094 14925221 GAATAAATCTCCGCATCGA 57 14925289 14925307 TCATGATCATGTCGATGTG 57 NA Drosophila melanogaster 50 CG9941 FBgn0030514 FBtr0073843 2 1 1 157 X 13613452 13613470 AGTCCAACAACGTAAGCTC 59 13613248 13613266 TACGATAATATTGGCCGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12714 FBgn0040862 FBtr0073744 2 1 1 99 X 13005731 13005749 AGAATCTGCTAATCGAGCG 59 13005430 13005670 CGGATAAATTTCTTCATCGGC 59 NA Drosophila melanogaster 50 CG15721 FBgn0030438 FBtr0073715 1 1 1 159 X 12867627 12867645 ATACAACGTTTGCAACGAC 59 12867766 12868493 CCAATCATTCTGCTTTCTGTC 59 NA Drosophila melanogaster 50 CG32654 FBgn0052654 FBtr0113445,FBtr0113444 2 2 2 60 X 12498247 12498265 ATAGCTCTGCTACAGAGCT 59 12498288 12498367 CCAAGTAGAATAAGCCTGGG 59 NA DesignRelaxed Drosophila melanogaster 50 fw FBgn0001083 FBtr0112806,FBtr0073580 3 2 2 98 X 11888948 11889035 AACCTATAAGATTGGAGCACTG 59 11888871 11888889 CTCCATTGTCCACTATCCG 59 NA Drosophila melanogaster 50 CG18130 FBgn0030359 FBtr0073581 1 1 1 107 X 11886523 11886541 TTTACTCGGAATGGTGTGG 59 11886375 11886452 TATCCGATTTGCAAATGGC 58 NA Nonspecific Drosophila melanogaster 50 CG34321 FBgn0085350 FBtr0112523 1 1 1 199 X 11625579 11625597 TCGAATCGAACGTGAAGAG 59 11625398 11625416 AAATCGCTCGGTATACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1397 FBgn0030275 FBtr0073470 2 1 1 82 X 11047111 11047129 AGGTGTACATGTGCTTCTG 59 11047047 11047065 GGTGATGAGGATCATCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sofe FBgn0030242 FBtr0073409 3 1 1 60 X 10751148 10751166 ACATTCTACACGGATCTCC 58 10751106 10751124 TGTCGTTGAGTATACCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9817 FBgn0030219 FBtr0071509 3 1 1 83 X 10499368 10499386 GAGGAGAACAGCATAATGC 58 10499205 10499223 GTACATCAGGTCGATCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15307 FBgn0030192 FBtr0071442 1 1 1 80 X 10238023 10238041 AGGCGTAACTACGATATGC 59 10238085 10240895 CGACGATCGGTAATTAAGC 58 NA Drosophila melanogaster 50 Yp1 FBgn0004045 FBtr0071419 1 1 1 70 X 9948604 9948622 AGGTTAAGAACGCCAAGAC 59 9948656 9948674 ATAGGTGTTCAGCTTGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32694 FBgn0052694 FBtr0071412,FBtr0071411 3 2 4 64 X 9898737 9898755 GAACTCACCCTAGACTCTG 58 9898782 9899195 AACAGATTACTCTTGTTGCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG15247 FBgn0030156 FBtr0071397 3 1 1 60 X 9769647 9769665 TGTTATACGATCACACGGG 59 9769605 9769624 TAGATCTCCTCCTTCTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34352 FBgn0085381 FBtr0112562 3 1 1 80 X 9259559 9259637 TTGCATCAATAAGGGATGGA 59 9259498 9259517 TTGGAGTTACAGAATTTGCC 58 NA Drosophila melanogaster 50 lz FBgn0002576 FBtr0112814,FBtr0071320 2 2 2 221 X 9180746 9180765 GTTCACCAGGATCTATTGTG 57 9182498 9182516 GCAATTCTCATCGTTTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17446 FBgn0030121 FBtr0071327 2 1 1 116 X 9165969 9165988 TAAGTGTGGCTTCAATCTGG 59 9165811 9165829 TTATCAAGATGCTTGCGTG 58 NA DesignNoJunction Drosophila melanogaster 50 Dsor1 FBgn0010269 FBtr0071313 3 1 1 67 X 9143683 9143701 CATCTGCCTGAAGAAACAG 58 9143732 9143821 GTATCCACGGATGACTCAG 59 NA DesignRelaxed Drosophila melanogaster 50 mei-P26 FBgn0026206 FBtr0071303 2 1 1 91 X 9064243 9064342 ATCGCTATACGAGACAACG 59 9064397 9064415 ATGCGATAGAGGAATGTGC 59 NA Drosophila melanogaster 50 Ogg1 FBgn0027864 FBtr0071223 2 1 1 117 X 8585476 8585494 CTACCTGCCACATCTAACC 59 8585574 8585652 AAAGAGAATAGCTTGAGCCC 59 NA Drosophila melanogaster 50 sdt FBgn0003349 FBtr0111034,FBtr0100375,FBtr0089974,FBtr0089978,FBtr0100376,FBtr0089975 1 6 7 180 X 8131033 8131051 ATTCCTAGTCAGTCGTTCC 58 8131195 8131275 ATAAAGGATATCCCGCCTC 58 NA Drosophila melanogaster 50 sn FBgn0003447 FBtr0071101,FBtr0071100,FBtr0071102 3 3 3 84 X 7879377 7879472 GGATCTGCATAAGATCGCA 59 7879520 7879538 GAATCGGTTCCATCATCCA 59 NA Drosophila melanogaster 50 Nek2 FBgn0029970 FBtr0071142 3 1 1 60 X 7784556 7784575 GTTCATCCAGAGCTATCGAG 59 7784515 7784534 CATAGCCTTCATTGAAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32741 FBgn0052741 FBtr0070958 3 1 1 164 X 6591533 6591552 TCTTTGTACTTCCGTTTCGT 59 6591676 6592136 GTACAACAAGAATCGATTGAGG 59 NA InUTR Drosophila melanogaster 50 CG15777 FBgn0029781 FBtr0070854 3 1 1 75 X 5550147 5550165 GGCAACATACAGGAGACTC 59 5550090 5550108 CAATATCCCTATCGCCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070738,FBtr0070739,FBtr0070740,FBtr0100408 1 4 4 214 X 4962802 4962820 CAGTATGCCTACAAGGAGC 59 4963094 4963112 TAATTGTGGACTGGCATGG 59 NA DesignNoJunction Drosophila melanogaster 50 norpA FBgn0004625 FBtr0100671,FBtr0100670 2 2 4 90 X 4247570 4247588 TGACGATCTGTTCGAACAC 59 4247642 4247990 CCATCTAGCCAGATCTTGG 59 NA Drosophila melanogaster 50 Femcoat FBgn0041252 FBtr0070663 3 1 1 61 X 4136302 4136320 AAGAAGACCACAGTGAAGC 59 4136259 4136278 TATTTAGCAGTGTCCTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10804 FBgn0029663 FBtr0070592,FBtr0114487,FBtr0070591 3 3 3 146 X 3374462 3374480 ATTATGTTCTTGCTGGCCA 59 3374262 3374280 ATAGAAGATCGGTATGCCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34333 FBgn0085362 FBtr0112535 2 1 1 60 X 2171121 2171139 TCCATCTTACTCAGCTCCT 59 2171161 2171181 CGAATAAGATGAAGATGCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF2B-epsilon FBgn0023512 FBtr0070350,FBtr0070351 2 2 2 60 X 1814876 1814895 GGATTCCATGATGGATTGTC 58 1814774 1814793 CACTAGATGATTCTCCTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 dor FBgn0000482 FBtr0070269 3 1 1 106 X 1561638 1561717 TCGCATAGCTTATCACGAC 59 1561787 1561805 CAAAGAAGGGCAGTAGGTC 59 NA Drosophila melanogaster 50 CG14795 FBgn0025393 FBtr0070285 3 1 1 206 X 1406697 1406715 CCTGAAGAGAAGTACGAGG 58 1406389 1406462 CACTGTGATCAGGACATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32813 FBgn0052813 FBtr0070224,FBtr0070220,FBtr0070222,FBtr0070221,FBtr0070223,FBtr0070219 2 6 6 73 X 1284572 1284590 GTCTAGCAACGGGATTACC 59 1284627 1284645 TAATCGAGGTCTTCGTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mod(r) FBgn0016038 FBtr0089725,FBtr0089726 2 2 4 84 X 516383 516478 CATATCAGGGAGCTTCTTCAG 59 516524 516542 TCTTTCCGTTCAGGAAGTG 59 NA Drosophila melanogaster 50 CG41622 FBgn0085724 FBtr0114173 1 1 1 60 U 5530774 5530793 TTGGGTTACCTAATCCTGAG 58 5530733 5530751 AAGAAACACTCACGTTTGG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40196 FBgn0058196 FBtr0113830,FBtr0113829,FBtr0113831 1 3 3 119 U 1092306 1092324 AGATCTAAGTTGCGATCCT 57 1092152 1092224 TAAAGAGAATTCACTGCTCG 57 NA Drosophila melanogaster 50 CG41498 FBgn0085659 FBtr0114104 1 1 1 76 U 611579 611597 AGTCGAAACCAGAAACTCG 59 611521 611539 AATGTCGGCTAAATGTTGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18160 FBgn0039980 FBtr0113765 3 1 1 112 U 376562 376580 GTTCCATATCCACGATTGC 58 376707 376725 TTGCATGGTATTCCCTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41318 FBgn0085611 FBtr0114055 1 1 1 60 U 214276 214297 ATTTCAGAAGGTATCTGTAGGG 59 214315 214336 CGTAGTTTATCACCTCTATCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sphinx FBgn0083990 FBtr0111046,FBtr0111044,FBtr0111045 2 3 3 60 4 996097 996118 TAGCCGAGAGTACTATTAATGC 59 996136 996157 CACTACAGGAATCTTAAAGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32017 FBgn0052017 FBtr0089206 3 1 1 80 4 1159876 1161127 TCCCTTCTAAATGAGGATTCTG 59 1159817 1159837 ATTAAGTATCGGAAGGTCTGC 59 NA Drosophila melanogaster 50 plexA FBgn0025741 FBtr0089226,FBtr0089223 1 2 5 80 4 1040636 1042882 CCATGTGTTCTAACGAAACTG 59 1040576 1040595 GGTTTCTCCTCCTAAAGGTG 59 NA Drosophila melanogaster 50 plexA FBgn0025741 FBtr0089226,FBtr0089223 2 2 5 81 4 1040636 1042882 CCATGTGTTCTAACGAAACTG 59 1040575 1040593 GGGTTTCTCCTCCTAAAGG 58 NA Drosophila melanogaster 50 CG32016 FBgn0052016 FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232 3 6 6 146 4 974515 974656 CTACTCTCAAGAATTGCATTCG 59 974390 974408 CTTGGTGATTGCGTATCCT 59 NA Drosophila melanogaster 50 Cec-Psi1 FBgn0000280 FBtr0085613 1 1 1 60 3R 26037283 26037302 ACTTATTGGCCACAATTGGA 59 26037386 26037404 GGGTGTATAGACCAACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ferrochelatase FBgn0024891 FBtr0085849,FBtr0085851 3 2 3 97 3R 27636789 27636807 GTCAGACGAATCCCTACAG 59 27636651 27636730 CTTAACATAGCCCTTAATGGC 58 NA Drosophila melanogaster 50 5-HT7 FBgn0004573 FBtr0085746 2 1 1 60 3R 26795822 26795840 GCTCTCGTCTCTATTCCTC 58 26795780 26795800 GTAGATAATAGGGTTCAGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11315 FBgn0039801 FBtr0085721,FBtr0085722 3 2 2 129 3R 26571886 26571904 CAGACTTGCGAAGATAGTG 57 26571775 26571793 TAAAGTCGAAGCTCATCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31010 FBgn0051010 FBtr0085725 3 1 1 60 3R 26531327 26531346 AATCCAAGGAAGATCTTTGG 57 26531286 26531305 CATTCAACCTACAGTTGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hdc FBgn0010113 FBtr0085621,FBtr0085619 1 2 3 138 3R 26105941 26105959 GAGGTCGAACTCTATTCCG 59 26134965 26183984 CCTCGTCCTCAATCTTGAC 59 NA Drosophila melanogaster 50 DopR2 FBgn0015129 FBtr0085468 3 1 2 211 3R 25466370 25466388 AATCCTGTGATTTACGCCT 58 25464739 25464757 TATATGTAGGTCTGCTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14508 FBgn0039651 FBtr0085406 1 1 1 60 3R 25028580 25028600 CATTTCCTACTACATCAAGCG 58 25028540 25028558 GAAGAAGATCTTGCGAGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12428 FBgn0039543 FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236 2 5 5 149 3R 23529755 23529773 ATCCGATGTACACCAAGAG 58 23529568 23529642 TAATGAACACAGCTTCCGA 58 NA Drosophila melanogaster 50 ALiX FBgn0086346 FBtr0085241 3 1 1 108 3R 23522542 23522618 TCCTGGTAACTATCAGTACC 57 23522453 23522471 CTTCTGGTTGGGATATCCA 58 NA Drosophila melanogaster 50 CG14550 FBgn0039405 FBtr0084974 2 1 1 150 3R 21883446 21883464 CTCGTATACGTGACTTGGG 59 21883314 21883333 TCGATAGATTTATGGCAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14542 FBgn0039402 FBtr0084967 3 1 1 111 3R 21878677 21878695 GATGCTGCGTAAGAATCAG 58 21878770 21878788 CATCTTCTTGATATCCGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 And FBgn0011273 FBtr0084904 3 1 1 60 3R 21638554 21638572 GAACTTCACTGAGTTCTGC 58 21638596 21638614 CTCCTCAGTGTCAGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4673 FBgn0039348 FBtr0084893,FBtr0084892 2 2 2 81 3R 21448138 21448156 TTCGATCAATATTCAGCCG 57 21448015 21448094 CCAACCAATCTTCTTCAGTC 58 NA Drosophila melanogaster 50 CG5107 FBgn0039342 FBtr0084879 3 1 1 60 3R 21331246 21331267 ACTGTATTATCAAGGAGGTGAC 59 21331288 21331306 ATAGCATCCACATAGCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11892 FBgn0039313 FBtr0089645 1 1 2 137 3R 21108534 21108619 GAAGAAATTCTACGCTGCC 58 21108720 21108738 TTCCTATAGCAGGCATCCT 59 NA Drosophila melanogaster 50 CG31106 FBgn0051106 FBtr0084806 1 1 1 83 3R 21044194 21044212 ATATCATCGGAGTGCTCCT 59 21044259 21044344 TCAGACTTGCACATACCAG 59 NA Drosophila melanogaster 50 CG6422 FBgn0039261 FBtr0113281,FBtr0084795,FBtr0084794 1 3 3 90 3R 20864033 20864153 TGAAGTCTCTGGCAATGAC 59 20863961 20863982 GTTCATATTGTTCCATGGAGTG 59 NA Drosophila melanogaster 50 CG18528 FBgn0039189 FBtr0084628 1 1 1 93 3R 20185004 20185022 GATTGGCCGATCTTATCCA 59 20184873 20184891 CAGTTGTCGTAGAGTCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5746 FBgn0039186 FBtr0084631,FBtr0084630 3 2 2 117 3R 20172702 20172816 TATCAGAACTACAACTCGACG 59 20172605 20172623 GTCCGGTAGCATTGTAGTC 59 NA Drosophila melanogaster 50 CG5746 FBgn0039186 FBtr0084631,FBtr0084630 1 2 2 115 3R 20172702 20172814 TCAGAACTACAACTCGACG 59 20172605 20172623 GTCCGGTAGCATTGTAGTC 59 NA Drosophila melanogaster 50 Dis3 FBgn0039183 FBtr0084605 1 1 1 81 3R 20161162 20161180 TGAAATAGCCAAGTCCCTG 59 20161225 20161299 GACAAGGGCTCCATTATCC 59 NA Drosophila melanogaster 50 CG6356 FBgn0039178 FBtr0084601 1 1 1 80 3R 20112887 20112967 AACTGCTACCTGATGAGTG 58 20113008 20113029 TCTGAAGAGAATCTTGTAGACG 59 NA Drosophila melanogaster 50 wge FBgn0051151 FBtr0110835,FBtr0084329,FBtr0084328 1 3 3 80 3R 18539679 18539697 ATCACATTGGATGGAGAGC 59 18539554 18539635 TACCTCGAGGATCGTATCC 59 NA Drosophila melanogaster 50 loco FBgn0020278 FBtr0084275,FBtr0084274,FBtr0084276,FBtr0084273 2 4 4 86 3R 18446567 18446653 AGCACCAAGATGAACTACTC 59 18446500 18446518 AGTCGAAGTTGATTTCGGT 59 NA Drosophila melanogaster 50 tsl FBgn0003867 FBtr0084164,FBtr0084165 3 2 2 81 3R 17604914 17605283 CATCTATAGGAATCTGAGTGGC 59 17604854 17604872 CTCCATGTGAAAGTCTCCA 58 NA Drosophila melanogaster 50 CG7907 FBgn0038887 FBtr0113262,FBtr0113261 3 2 2 135 3R 17231106 17231124 CAACTTCGGGTTTAACTGC 59 17231223 17231310 GTACGAAAGTCTGAAGCAC 58 NA Drosophila melanogaster 50 CG7907 FBgn0038887 FBtr0113262,FBtr0113261 1 2 2 81 3R 17231539 17231557 TGTCTTCATCTGGGATCCA 59 17231600 17231709 CAACCAAATCCTTGAAGACAG 59 NA Drosophila melanogaster 50 CG5630 FBgn0038842 FBtr0113257,FBtr0083979 1 2 2 97 3R 16751961 16752071 CAGCGAGGATTATGATCCA 58 16752132 16752150 TTCCAGTTACTTGCTTTGC 58 NA Drosophila melanogaster 50 TotA FBgn0028396 FBtr0083971 3 1 1 60 3R 16697133 16697154 CATTATAATCGATGGAGTTCCG 58 16697175 16697193 AATCTTTCCAACGATCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4000 FBgn0038820 FBtr0083935 2 1 1 121 3R 16502087 16502172 AAATGCGATTCACGTTGTG 59 16501984 16502002 TAGGGTAAATGTGAGCTCC 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 Nep4 FBgn0038818 FBtr0083936,FBtr0083937 2 2 2 140 3R 16479556 16479574 TACATAAGTGGTGGACGGA 59 16479272 16479452 CTGCGATATTCTCACCCTG 59 NA Drosophila melanogaster 50 CG10883 FBgn0038781 FBtr0083873 1 1 1 60 3R 16114457 16114478 CATGTTGCTTGTAAGTACTACC 59 16114418 16114437 CAGCAACGTATTATCATTGC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Dys FBgn0024242 FBtr0110919 2 1 8 153 3R 15419677 15419695 AAAGGAGCATGATGACAGG 59 15419810 15420231 CTTGAGTTCTCATTCAAGTGC 59 NA Drosophila melanogaster 50 CG31224 FBgn0051224 FBtr0083691 2 1 1 93 3R 14478940 14479022 GAGTGAGTCGGTTTATGGG 59 14478865 14478883 CGGATAATAGTCCTGTCGC 59 NA Drosophila melanogaster 50 koko FBgn0051232 FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629 1 5 5 84 3R 14229544 14229623 TACGATGAGTTCCTCATTGC 59 14229670 14229688 TGACATCGCGTATCTTGAC 59 NA Drosophila melanogaster 50 gl FBgn0004618 FBtr0083585,FBtr0083584 1 2 2 60 3R 14197167 14197470 CTGAACACAATTCTGGATTCC 59 14197127 14197146 CGCACGATATGTACATAGCT 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 PP2AB FBgn0042693 FBtr0083556,FBtr0083555 1 2 5 262 3R 14000710 14000728 ATCTATTCTACACGCCACC 58 14001241 14001333 GACAGCAAACATATTGATCG 57 NA DesignRelaxed Drosophila melanogaster 50 osa FBgn0003013 FBtr0089581,FBtr0089582,FBtr0089583 1 3 3 108 3R 13533850 13533868 TCTCAATATTCGCCGTACC 59 13533696 13533778 GATTCGGTTCGGGATACTG 59 NA Drosophila melanogaster 50 Edg91 FBgn0004554 FBtr0083502 1 1 1 60 3R 13437001 13437019 GGCAGTGTAGGACTTAGTG 59 13436959 13436977 CTCCGAAACCGCTATACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31267 FBgn0051267 FBtr0083404 3 1 1 60 3R 12960550 12960570 CTCAGAATATCACAATCGCTC 58 12960592 12960610 TACATGGTTAGCGTTTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5220 FBgn0038471 FBtr0083391 2 1 1 156 3R 12867363 12867383 GAGACTTAAATGGGTTGAGTG 58 12867556 12867576 CGTTGTTCATCATAGACTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083348,FBtr0083352,FBtr0083351,FBtr0083350,FBtr0083347,FBtr0083349 2 6 6 65 3R 12558920 12558938 GAGCCTACAAACAGGACTG 59 12558873 12558892 TCCAAATGTCTTTGTAGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nonA-l FBgn0015520 FBtr0083335 2 1 1 60 3R 12466374 12466392 AAGCAGATTAACGAATCGC 58 12466416 12466434 GTTCATTGTTCTTTGCGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 npf FBgn0027109 FBtr0083328 1 1 1 84 3R 12436763 12436834 ATGGAGGAGAATTTGCTCG 59 12436882 12436900 ATGAGTTAGTGACGTTGCC 59 NA InUTR Drosophila melanogaster 50 CG12753 FBgn0038427 FBtr0083315,FBtr0100643 1 2 2 80 3R 12266239 12266257 TTCAGTAATCTGGTCTGGT 57 12266116 12266198 CGATTGATGGTCTATATCTGTG 58 NA Drosophila melanogaster 50 gish FBgn0011253 FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333 2 6 8 138 3R 12118541 12119712 CTATTAGGATCACATGCCGA 59 12119813 12119831 GGGCGCAAATATTGAAGAG 59 NA Drosophila melanogaster 50 CG31291 FBgn0051291 FBtr0083243,FBtr0083244,FBtr0113402 1 3 3 81 3R 11740155 11740174 TGGATAAACTGACCAACGAG 59 11737878 11740113 GCAGATATTTCCTCTTTGTGC 59 NA Drosophila melanogaster 50 CG14870 FBgn0038342 FBtr0083145 3 1 1 73 3R 11307884 11307903 CTTTAGTTTGAGCATCGTGG 59 11307939 11307957 GGAAGACGAACTCCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aats-ser FBgn0021750 FBtr0083086 2 1 1 60 3R 11166911 11166930 GGAGTTCTCTGAATTAGCCC 59 11166952 11166971 GTAGTTACCCAAGTGATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ea FBgn0000533 FBtr0083083 2 1 1 112 3R 11155262 11155283 GGATGGCTCTAATTGAATACAC 58 11155420 11155438 CTTTCCGTTGACACAATGC 59 NA DesignNoJunction Drosophila melanogaster 50 Oscp FBgn0016691 FBtr0083064,FBtr0083063 2 2 2 81 3R 11092176 11092194 TCTCTGAAGATCACTTCCC 57 11092239 11092257 TCATGTCGACGTACTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12241 FBgn0038304 FBtr0083051 1 1 1 123 3R 11045718 11045736 ATGTGGATGCGTCTATCAG 59 11045884 11045902 AAAGGTCCTTCTCGATCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6966 FBgn0038286 FBtr0113236 1 1 1 91 3R 10908849 10908867 TCAAGTACCTGGTACACCA 59 10908559 10908577 GAAGTGACCCTTGTAGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 cv-c FBgn0086901 FBtr0112632,FBtr0112630 2 2 3 153 3R 10235276 10235547 AGACAATAACTCCACATCGTC 59 10235143 10235161 AGACATATCCTTTGGTGGC 59 NA Drosophila melanogaster 50 CG31321 FBgn0051321 FBtr0082926 1 1 1 80 3R 10138093 10138172 CTTTCACCTGTCAGATTATCTC 58 10138211 10138231 GAACTATAGCCTCACAGTAGG 59 NA Drosophila melanogaster 50 CG9624 FBgn0038213 FBtr0082897 2 1 1 60 3R 10054255 10054273 CATTCATGATCACGACTGC 58 10054213 10054232 CTTAATGTCCACATCAGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12402 FBgn0038202 FBtr0082914 2 1 1 112 3R 9931792 9931873 CCATTTGCCAATACCAGAC 58 9931698 9931719 TAGTCGACTTATAGGATAGGGA 58 NA Drosophila melanogaster 50 Mst87F FBgn0002862 FBtr0082884 1 1 1 75 3R 9653026 9653044 ATTGTGGATACCCTTGCTG 59 9652969 9652987 TATCGTCTTGGTGTTCTGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082802,FBtr0082803,FBtr0082807,FBtr0082801,FBtr0100261,FBtr0082805,FBtr0082804 1 7 8 139 3R 9487452 9487470 TATCATGGTGGGATCTCGA 59 9487573 9487892 CTTCGAATTCCACAAAGCC 59 NA InUTR Drosophila melanogaster 50 CG17025 FBgn0040554 FBtr0082792 3 1 1 177 3R 9284229 9284248 CCATTATTCAGGGACATGCT 59 9284071 9284089 ATCGTTTCTCCCATGTGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG33977 FBgn0053977 FBtr0100020 1 1 1 62 3R 9228654 9228672 CTTTGCGATTCCCTATCTC 57 9228610 9228628 TACTTGGTAGTTAGTGGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8773 FBgn0038135 FBtr0082739 1 1 1 93 3R 9122465 9122486 CCGATACGGAATACAAATTGAC 59 9122540 9122623 CAACGGTAGTTGAATTCCG 58 NA Drosophila melanogaster 50 CG17319 FBgn0038119 FBtr0082714 3 1 1 60 3R 8952322 8952342 CAAAGACACCTAAACGAAACC 59 8952282 8952300 TCACAGATCCCTGATAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Past1 FBgn0016693 FBtr0082655,FBtr0082654 1 2 2 74 3R 8529482 8529500 AGATGGCATCTTCAATGGG 59 8529601 8529619 TTGATGAGTTCCTGCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Cpn FBgn0010218 FBtr0082548,FBtr0082547 1 2 2 60 3R 7989966 7989985 GAAGAAACTCCTGAGACACC 59 7989925 7989946 TATCTAAAGCTGCTATGGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14740 FBgn0037988 FBtr0082552 2 1 1 91 3R 7888309 7888328 TTAATAGCGTGATTGGAGGA 58 7888167 7888186 TCCACGGTAATAAATACCCT 57 NA DesignNoJunction Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 2 15 15 121 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811941 7812031 TTCTTCAGGATGTTGGAGG 58 NA Drosophila melanogaster 50 CG14684 FBgn0037824 FBtr0082268 2 1 1 61 3R 6532877 6532895 TGATCAAGAGCTTGAGGAC 58 6532920 6532938 TCTTCAACTGTTGCATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31467 FBgn0051467 FBtr0082320 3 1 1 60 3R 6531486 6531506 CTTTATAGATGTATCGCACGG 58 6531446 6531464 AAGAAGCGTGTTGTAGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9393 FBgn0037710 FBtr0082113 1 1 1 84 3R 5387714 5387905 TACAACCAGCTAACGACAC 59 5387648 5387666 ATTAGTCTAGGCCCTCCTC 59 NA Drosophila melanogaster 50 CG9362 FBgn0037696 FBtr0082044 2 1 1 172 3R 5281645 5281663 ATAGGCAAGGATCAGAGTC 58 5281428 5281509 TCAGCTTTGTATCTCCTGG 58 NA Drosophila melanogaster 50 CG33936 FBgn0053936 FBtr0091943,FBtr0091942 1 2 4 145 3R 5180565 5180654 GTATGCTATAAGGACTCGCT 58 5180762 5180780 TGTAAACTGGTGACTGTGG 59 NA Drosophila melanogaster 50 tgo FBgn0015014 FBtr0082005 1 1 1 60 3R 4844947 4844965 AGCAATTATCAACCCAGGA 58 4844905 4844923 GTTCCCGACTTTAGATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31100 FBgn0051100 FBtr0082011 1 1 1 138 3R 4825874 4825892 GATCGGCCATTGTTTATGC 59 4825363 4825773 TCATGCCATATCCGAATAGC 59 NA Drosophila melanogaster 50 CG13318 FBgn0037627 FBtr0081942 3 1 1 99 3R 4597902 4597984 AACAATGGAGGATATCCCAC 59 4597822 4597840 GACCACACTGATAGCTTCC 59 NA Drosophila melanogaster 50 CG8036 FBgn0037607 FBtr0081882,FBtr0081881,FBtr0081883 1 3 3 142 3R 4499021 4499107 GATCACTACCAGCAAGGAG 59 4499213 4499231 GAGATGCCGAACATATCGA 59 NA Drosophila melanogaster 50 Cyp313b1 FBgn0037601 FBtr0081893 3 1 1 131 3R 4470311 4470382 AAGCTTATAATGGCTTGACC 57 4470199 4470217 TAAACCCAAACAGTATGCC 57 NA Drosophila melanogaster 50 CG7878 FBgn0037549 FBtr0113205 3 1 1 91 3R 3949750 3949771 AAATGGAGGTCAAGAAGTACTC 59 3949885 3949903 CTCCAAGTCGGATATCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1307 FBgn0026566 FBtr0081698 1 1 1 73 3R 2482897 2482915 GGAATCTTCGGTGTCTAGC 59 2482588 2482606 TAAAGTTGTCGTTCAAGCC 58 NA DesignNoJunction Drosophila melanogaster 50 Taf1 FBgn0010355 FBtr0081686,FBtr0081685,FBtr0081684 3 3 3 82 3R 2478391 2478480 AACATTGAAGCTCATCGCT 59 2478526 2478544 TTGTACTGCTCACAGTTGG 59 NA Drosophila melanogaster 50 Neurochondrin FBgn0037447 FBtr0081729 1 1 1 60 3R 2295763 2295781 CTCTTCACCCATAAGCAGG 59 2295804 2295823 CAATGCTGAAGTAGAACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9853 FBgn0086605 FBtr0113192,FBtr0078949 2 2 2 98 3R 225237 225255 AGATACCGACAACTTCCTG 58 225097 225175 ATGGTCCGTTGAATAAGGG 59 NA Drosophila melanogaster 50 CG14640 FBgn0037227 FBtr0078976 3 1 1 102 3R 80839 80857 GGATTACAAGGAACGTCAC 58 80923 80941 GATCTTGATGGTCTTCCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14640 FBgn0037227 FBtr0078976 1 1 1 99 3R 80843 80862 TACAAGGAACGTCACATCAC 59 80923 80942 TGATCTTGATGGTCTTCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-1837b FBgn0082995 FBtr0113608 3 1 1 64 3L 5757276 5757294 TGCGGATAGAAACTGTGTC 59 5757230 5757249 AAGACCGAACACTTCTATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS5 FBgn0044510 FBtr0111146,FBtr0111144,FBtr0111147,FBtr0111145 2 4 4 61 3L 24530644 24530665 GCTTGTTATCTTCACATGAACC 59 24530685 24530705 GAAGCTGGTATTACGTAAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32458 FBgn0052458 FBtr0078566 2 1 1 60 3L 23024327 23024345 GATCATACTCCACACTCGG 59 23024367 23024387 CTTCCGTTCTATCGTATTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nrm FBgn0005629 FBtr0111148 2 1 2 110 3L 23017168 23017186 TTATCATACTGGTTGCTGC 57 23017259 23018194 CCGTGAGATATTTATCCTGG 57 NA Drosophila melanogaster 50 Chro FBgn0044324 FBtr0078568,FBtr0078569 2 2 3 143 3L 22870966 22871045 TTATAAGAGCTGCACAGGA 57 22870841 22870859 GCGATTCCTTCAAATTTGC 58 NA Drosophila melanogaster 50 Arf79F FBgn0010348 FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0078571,FBtr0078572 3 6 7 86 3L 22862823 22862842 ATTAGCTTTACAGTGTGGGA 58 22862563 22862777 GATAAGACCTTGTGTATTCTGG 58 NA Drosophila melanogaster 50 CG14459 FBgn0037171 FBtr0113185 2 1 1 91 3L 22576456 22588983 ACACCAGTAAAGCCAAGTC 59 22576383 22576401 GTTGTATTGGTTCTGCTGC 59 NA Drosophila melanogaster 50 CG14573 FBgn0037125 FBtr0078433 1 1 1 164 3L 21727441 21727459 GATGTGGATACAGATGCCT 58 21727587 21727605 CAACTTGCCCAATCTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr78Cc FBgn0037069 FBtr0078338 3 1 1 74 3L 21293724 21293812 TTTAAGCTATCGCTCTGCC 59 21293848 21293868 GGCATCCTTGTTTATGTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12974 FBgn0037065 FBtr0078410,FBtr0078411 3 2 2 173 3L 21276389 21276407 GTCATCTATCCCTTGGCTG 59 21275743 21276255 GAACAAAGTATCCACATTGTCC 59 NA Drosophila melanogaster 50 siz FBgn0026179 FBtr0111038,FBtr0078289,FBtr0078290 1 3 3 117 3L 21066243 21066322 ATCCGATACGATCTTCGTC 58 21066401 21066421 GCGCAGATTCTTGATAAAGTC 59 NA Drosophila melanogaster 50 fng FBgn0011591 FBtr0078267 2 1 1 82 3L 20936716 20936734 CGACGAAGAACTATCACGA 59 20929803 20936670 GAAGAACCAGGTCTGATCG 59 NA Drosophila melanogaster 50 CG13252 FBgn0037016 FBtr0078245 1 1 1 214 3L 20730548 20730566 ATTTGTTTCCAGTGCAACG 59 20735860 20735880 GACCTCTATTGTAGGATACCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17233 FBgn0036958 FBtr0074852,FBtr0074851,FBtr0074850 3 3 3 66 3L 20228040 20228058 GGAAAGACCTTCTATCGCA 59 20227932 20227953 GGTAGAGTTTCTTAGTTTCGAG 58 NA DesignNoJunction Drosophila melanogaster 50 kto FBgn0001324 FBtr0074884 1 1 1 169 3L 19835690 19835781 CCGAGAAGATTTGCATAAAGG 59 19835912 19835930 TTGCTGAGTATTGACCACC 59 NA Drosophila melanogaster 50 CG6856 FBgn0036819 FBtr0075062 3 1 1 72 3L 18861379 18861397 GAGCTGAACAGTAGTCTGG 59 18861432 18861451 AATTAAGAACCTGTGAGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6322 FBgn0036733 FBtr0075209 1 1 1 60 3L 17506387 17506406 GAAGACGTCTTAAGGAACTC 57 17506346 17506364 TACTGCCTCTTGTTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13024 FBgn0036665 FBtr0075340 1 1 1 95 3L 16803226 16803244 ATAGTCAGCATGAGTACCA 57 16803090 16803108 TAAATCCTAGCTCTTGGGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Int6 FBgn0025582 FBtr0075345 1 1 1 80 3L 16779403 16779421 GCAACTATCAGGAGTCCAC 59 16779255 16779362 GCACATTAAGGTAGTTCTTGTC 59 NA Drosophila melanogaster 50 CG4680 FBgn0036627 FBtr0075388 1 1 1 60 3L 16388827 16388845 TACGTTCGTCAAATGTCCA 59 16388868 16388887 GATTGTAGTAGCTCTTCGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13050 FBgn0036591 FBtr0075478 2 1 1 75 3L 16272006 16272024 GGATTGGGTCTAGGAATCG 59 16271949 16271967 GACCAAGACCTCCATAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf4 FBgn0010280 FBtr0075450,FBtr0075451 2 2 5 111 3L 16108922 16110654 AGTCCATCGTCTATGACCA 59 16110728 16110747 CATTTAGTTGCGTCAGATGC 59 NA Drosophila melanogaster 50 CG13075 FBgn0036563 FBtr0075443 2 1 1 141 3L 16077653 16077725 CCGAATTTCTTGGATTGGA 57 16077829 16077848 CTAGGATTGGTACTAGGCTC 58 NA Drosophila melanogaster 50 Dcp2 FBgn0036534 FBtr0100528,FBtr0075539,FBtr0075538 3 3 4 89 3L 15815233 15815251 GGAGGTACTGTATCCTCGA 59 15815103 15815181 GCTGACAATCTTCTCATTGC 59 NA Drosophila melanogaster 50 Eig71Ec FBgn0004590 FBtr0075586 1 1 1 101 3L 15644933 15645029 TTGTCGATTGACACTCGAG 59 15644850 15644868 GTCCTCCTTGAAGTTGGAG 59 NA Drosophila melanogaster 50 CrebA FBgn0004396 FBtr0075557 3 1 2 102 3L 15529544 15540982 GACTTAGATCCGGAATCCT 57 15541048 15541066 GCTTGTCGTTGAGTATGAC 58 NA Drosophila melanogaster 50 Brd FBgn0000216 FBtr0075621 2 1 1 110 3L 14965975 14965993 AGCAACTGAAGAACCACTC 59 14966067 14966085 ATTACAGTTGGACGAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13476 FBgn0036441 FBtr0075687,FBtr0075686 1 2 2 70 3L 14698767 14698788 CAGAAAGCTCTAGTTGATATCG 58 14698819 14698837 GCATTATGGATTGTGTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100041 3 1 6 99 3L 14223199 14223286 AAGATTGTCTGGAACTGCT 58 14223349 14223367 ACTGCATATTCGGTCTTGG 59 NA Drosophila melanogaster 50 l(3)70Da FBgn0013563 FBtr0075777 2 1 1 80 3L 14065904 14065922 CGCATAGTGAATTCAACGC 59 14065966 14066042 CTTCAGACGATCCACTGTC 59 NA Drosophila melanogaster 50 CG10140 FBgn0036363 FBtr0075853 1 1 1 66 3L 13433279 13433297 TGTTTCTACCATTTGTGGG 57 13433162 13433180 AGTTCTATGGCTTGTCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33263 FBgn0053263 FBtr0075859 3 1 1 60 3L 13416881 13416899 GCGGACTCTTCTACTTTCC 59 13416839 13416860 CTGAAGGAATTGATTCTGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10948 FBgn0036317 FBtr0075939,FBtr0075938 3 2 3 286 3L 12842192 12842272 CAACTCTTAATGCGGATGG 58 12841924 12841943 GTAGATGGCCCTATCTATGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG32111 FBgn0052111 FBtr0075910 3 1 1 94 3L 12626967 12626986 GCAGATGTTGAATTAACCGA 58 12627043 12635162 ACTGGGATTTGTAGAACCG 59 NA InUTR Drosophila melanogaster 50 CG32104 FBgn0052104 FBtr0075986 2 1 1 80 3L 12390205 12390225 AGCTAAGGGTATTTCCAAAGG 59 12390080 12390164 ACCATCTGGACCTTATTGTC 59 NA Drosophila melanogaster 50 Pop2 FBgn0036239 FBtr0076058,FBtr0076059,FBtr0076060 3 3 3 80 3L 11993786 11993863 AAGTTTAACCTGAGCGAGG 59 11993724 11993744 GTGCTTCTTGAACTGAATTCC 59 NA Drosophila melanogaster 50 CG6053 FBgn0036195 FBtr0076129 1 1 1 121 3L 11690953 11691026 TTACACGAAAGTCTCCCAG 58 11690850 11690869 AATAAAGAGGTTCATCGCAC 58 NA Drosophila melanogaster 50 CG18815 FBgn0042138 FBtr0076105,FBtr0076104,FBtr0076103 3 3 3 81 3L 11622535 11622553 GAATGTGACGTTCAAGACG 59 11622598 11622692 ACTGATGATGTCCTTGACG 59 NA Drosophila melanogaster 50 CG7543 FBgn0036164 FBtr0076092 3 1 1 142 3L 11474111 11475773 GGAAGCCCTATAACTATAGCAC 59 11475876 11475894 ATTTCAGCCAGGACTAAGC 59 NA Drosophila melanogaster 50 wls FBgn0036141 FBtr0076218 2 1 2 267 3L 11161301 11161322 CATGATATGGAAGGTGTTTAGG 58 11160623 11160642 CATTTGGCCCATAATGAAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34239 FBgn0085268 FBtr0112433 3 1 1 72 3L 11033584 11033602 AAGATGTCCTTGAAACGTG 57 11033530 11033548 CTAACGAGGTGGTCATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8003 FBgn0036096 FBtr0076260 3 1 1 139 3L 10655708 10655786 GATGAGGTGGATTACGGAC 59 10655889 10655907 TCTTCTTGTGCATGAACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG14154 FBgn0036093 FBtr0076258 1 1 2 85 3L 10635693 10635814 GAGATGATGTTCTTAACGCG 59 10635862 10635880 AATTGGGTTAGATTGGCGT 59 NA Drosophila melanogaster 50 CG32055 FBgn0052055 FBtr0076304 2 1 1 60 3L 10212298 10212318 GTGGCTAAACCAGATAAACAG 58 10212258 10212276 TTGCAGTGAACTTAGTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Doc3 FBgn0035954 FBtr0076521 3 1 1 102 3L 8999303 8999322 CATACGAACCTCTGATCTCG 59 8999387 8999472 GCGGTCATTCTGATAAGCT 59 NA Drosophila melanogaster 50 CG13313 FBgn0035941 FBtr0076512 2 1 1 163 3L 8952903 8952923 CCTTTCTATACAATTGGTCGC 59 8953047 8953130 GTCCTTTGATAAATGCAGCA 58 NA Drosophila melanogaster 50 CG8111 FBgn0035825 FBtr0076770 3 1 1 61 3L 7907688 7907706 CCGCACCTACTATTACACG 59 7907645 7907663 TGTAGAAGTTTCGCGAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112702,FBtr0112698 3 6 10 81 3L 7693414 7693498 AACTGTACAAGGAAGTCATCC 59 7693353 7693373 TTAGCTTCGAATGGTTCTACC 59 NA Drosophila melanogaster 50 lqf FBgn0028582 FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794 2 6 6 86 3L 7527258 7527346 GATTTCAAGGATCCAAACGG 59 7527392 7527413 AGAAATATCCAGCAGATCTAGC 59 NA Drosophila melanogaster 50 eco FBgn0035766 FBtr0100278,FBtr0076882 3 2 2 60 3L 7331146 7331165 ATATAAACTGCAAGACGCTG 58 7331105 7331124 TCATACGACCTCATGTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8607 FBgn0035760 FBtr0076837 3 1 1 70 3L 7313428 7313446 CATCTACGAGGCGAATCTG 59 7313543 7313561 GAATGTCGTGCATGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32387 FBgn0052387 FBtr0076920,FBtr0110848 3 2 3 116 3L 7158112 7158130 CAAACCACGGTCATATTCG 58 7157939 7158032 TTGACTTTGCTTGTGTCTG 58 NA Drosophila melanogaster 50 BBS1 FBgn0035741 FBtr0076912 3 1 1 181 3L 7120268 7120286 GTTAAGATCCTGAGACGTG 57 7120431 7120531 CTTCCGTAGGTTGATTTGG 58 NA Drosophila melanogaster 50 SP1173 FBgn0035710 FBtr0076960,FBtr0076959,FBtr0076958 3 3 4 88 3L 6685394 6685479 AATAACCGGTCTTACAGCT 58 6685324 6685343 TAGTAATGGTCCGGTATTCC 58 NA Drosophila melanogaster 50 lin-28 FBgn0035626 FBtr0077090 1 1 1 106 3L 5650064 5650144 CAAGAATGTGACCCAAAGC 59 5650214 5650232 ATCCAAGGACTTCCTAGGT 59 NA InUTR Drosophila melanogaster 50 shep FBgn0052423 FBtr0077172,FBtr0077175,FBtr0077173,FBtr0077174 3 4 4 81 3L 5156244 5156459 CAGGTAGATGATCAGACTTCG 59 5156183 5156203 GTTTGTATGAGGTTACTCCCA 59 NA Drosophila melanogaster 50 Con FBgn0005775 FBtr0073375 3 1 1 178 3L 4953040 4953058 ATCTGCGAAACAATCTGCT 59 4940096 4952900 GAATTTGTTGTCTGACACGAG 59 NA Drosophila melanogaster 50 CG32235 FBgn0047330 FBtr0073355 2 1 1 217 3L 4860053 4860071 AAAGCAGGATTCAGGTTCC 59 4859854 4859875 TCTAATGCCAAGATCAATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7465 FBgn0035551 FBtr0073306 1 1 1 166 3L 4480850 4480868 TCCTTCCAACGAGTATCTG 58 4480998 4481016 TCTTGTAACGGTAACCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32264 FBgn0052264 FBtr0113431 1 1 5 139 3L 3754051 3767144 CAATAACGGAAACTGGTCAC 59 3723843 3723861 GTTGTGCATCAGTCTTGTC 59 NA Drosophila melanogaster 50 CG32264 FBgn0052264 FBtr0113431,FBtr0113430,FBtr0073188 2 3 5 98 3L 3718987 3722173 CAATAACTATTCGCTCAACAGG 59 3718910 3718929 CTTTCGCGTATCACAAATGG 59 NA Drosophila melanogaster 50 armi FBgn0041164 FBtr0073126,FBtr0100641 3 2 2 90 3L 3463214 3463234 TAAAGACAGACTTGCCTACAG 59 3463283 3463370 CTCGTAAATTTGGAATACTGGC 59 NA Drosophila melanogaster 50 CG32280 FBgn0052280 FBtr0073030,FBtr0073031,FBtr0073032 3 3 3 168 3L 3168252 3168339 ATTGCCCTATTTGGTTGCT 59 3168469 3168489 GTAATCAATCTACACCACGGA 59 NA InUTR Drosophila melanogaster 50 CG14956 FBgn0035403 FBtr0073026 1 1 1 85 3L 3157099 3157117 TGTCAAGAACGAGGAACTG 59 3157224 3157242 GACTAGAACGCGGATTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 1 9 15 80 3L 3083795 3084812 CTCGCCACTTATATGAATCG 58 3084852 3084873 CAAATTAAGTAGTGAGAACCCG 59 NA Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0073003,FBtr0073002,FBtr0072991,FBtr0072998,FBtr0072994,FBtr0073000,FBtr0072992,FBtr0073001,FBtr0113131 2 9 15 80 3L 3083796 3084813 TCGCCACTTATATGAATCGA 58 3084853 3084874 CCAAATTAAGTAGTGAGAACCC 58 NA Drosophila melanogaster 50 Pxn FBgn0011828 FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951 3 4 5 114 3L 2607772 2607790 TTCGTCAAGAATGTGACCA 59 2604263 2607695 CCAAATCCACGTTGTTTCTG 59 NA Drosophila melanogaster 50 CG33232 FBgn0035347 FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920 3 4 4 88 3L 2495884 2495902 ACATTAGCTCCGAGTACAC 58 2495952 2496031 GGCATTATGACCATATGACTC 58 NA Drosophila melanogaster 50 CG32298 FBgn0052298 FBtr0072897 3 1 1 61 3L 2390839 2390860 CCTAAGAATGTAGAGAATGCAC 58 2390799 2390817 GAAGCTTCTGGTATTTGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1275 FBgn0035321 FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906 2 4 4 69 3L 2253685 2253787 GTATGGCAACTCCATTCTG 58 2253634 2253652 GTGGGTAAGCTTCAGAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG32308 FBgn0052308 FBtr0113432 2 1 2 121 3L 2037607 2037625 GAGGAACACCATCGTAGAC 59 2037449 2037467 TCTTGAGAAAGCTCTCCCT 59 NA DesignNoJunction Drosophila melanogaster 50 JTBR FBgn0025820 FBtr0072788 3 1 1 64 3L 1802308 1802326 TACTTAGCTACCTGGTCAG 57 1802262 1802280 GATTCTCATGTAGTTGCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdc37 FBgn0011573 FBtr0072777 3 1 1 161 3L 1796691 1796710 GAGATCGAAGGTTTCAAAGG 58 1796834 1796916 ACAGGCCTTTAGTTCATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG7864 FBgn0035233 FBtr0072743 2 1 1 90 3L 1559024 1559042 AATAACCTTCAGACCCTCG 58 1559095 1559168 TCAGTTGTAACAATCTGCTG 58 NA Drosophila melanogaster 50 CG12091 FBgn0035228 FBtr0072831 2 1 1 160 3L 1535796 1535814 GAGGATCTAATGCTGCAGG 59 1535654 1535673 TGAATGTTATTCCTCCTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pUf68 FBgn0028577 FBtr0072710,FBtr0072707,FBtr0072709,FBtr0072708 2 4 4 157 3L 1498789 1499053 CTCATGTGCAGAGTCTACG 59 1498650 1498668 ATCTCATACTCCACGAACG 58 NA Drosophila melanogaster 50 stet FBgn0020248 FBtr0072712 1 1 2 80 3L 1477283 1487774 GGACTTTGTGAATGTGATGAG 59 1477223 1477241 GAGCAGACTTCACGATCTC 59 NA Drosophila melanogaster 50 Aplip1 FBgn0040281 FBtr0072626 3 1 2 115 3L 1197304 1197538 AACAAGAAATGTGGCTCCA 59 1197617 1197635 TTGAGGGACAGAAATGAGC 59 NA Nonspecific Drosophila melanogaster 50 CkIIalpha-i3 FBgn0025676 FBtr0072604,FBtr0072603 3 2 2 81 3L 709486 709566 TGTAAGCTTGCAACAAAGC 59 709423 709441 TGGACGATTCTTAGTCAGC 59 NA Drosophila melanogaster 50 CG17129 FBgn0035151 FBtr0072612,FBtr0072614 2 2 3 142 3L 679822 679909 GCAAGAATTTAGCGACCTG 59 679698 679716 CTCTTCACCTTTCACCTCG 59 NA InUTR Drosophila melanogaster 50 CG17129 FBgn0035151 FBtr0072612,FBtr0072614,FBtr0072613 1 3 3 60 3L 679096 679114 AGGTATCAAATTCCGACGA 58 679054 679072 CTTGCTAAGGGATCACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16940 FBgn0035111 FBtr0072486,FBtr0072487,FBtr0072485 2 3 3 81 3L 215571 215591 ATACACTCACTTTACTAGCCC 58 215692 215710 ACAATATTTAAGTGCGGCC 58 NA DesignNoJunction Drosophila melanogaster 50 Pk61C FBgn0020386 FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466 1 8 8 86 3L 142804 142822 ATATCGCGACTGCTTAGTG 59 142872 142953 GTCGAAAGAGTTCTTTGCG 59 NA Drosophila melanogaster 50 5SrRNA:CR33405 FBgn0053405 FBtr0086397 1 1 1 62 2R 15634543 15634561 AATACATCGGTTCTCGTCC 59 15634499 15634517 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR33655 FBgn0053655 FBtr0091634 1 1 1 79 2R 17207402 17207420 TACGATCTAACATGCGAGG 58 17207280 17207298 GCTTTCGATTTACCATCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30428 FBgn0050428 FBtr0072451 3 1 1 99 2R 21141567 21141585 AACTGACCAAGACGATTCC 59 21141697 21141715 GCTATGCTCTAACTGACCA 58 NA DesignNoJunction Drosophila melanogaster 50 gol FBgn0004919 FBtr0072460,FBtr0072459 2 2 2 74 2R 20962927 20962945 GACACCATACGGATATTGC 58 20962813 20962831 TCGATGCTCTATAAGCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG3611 FBgn0035069 FBtr0072377 2 1 1 88 2R 20686776 20686794 GATCTATCTGACGAGTCGC 59 20686846 20686864 TAACCACGAACTTCTTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3589 FBgn0035065 FBtr0072375 2 1 1 109 2R 20672168 20672186 ATTGTGGTCATAGAGTCGG 58 20672259 20672334 GTCTCAATGTTCTGTCCCA 59 NA Drosophila melanogaster 50 CG13582 FBgn0035015 FBtr0072301 2 1 1 162 2R 20406544 20406562 TATTCCGATCTGAAGTGGG 58 20407027 20407045 TGTAATGTAGCTCCTTCCC 58 NA DesignNoJunction Drosophila melanogaster 50 Zfrp8 FBgn0021875 FBtr0072253 2 1 1 107 2R 20021866 20021885 AATTTCACAGTCCTCAGGTC 59 20022009 20022027 TTTCTTTAGGCAGGGAACG 59 NA DesignNoJunction Drosophila melanogaster 50 Rap2l FBgn0025806 FBtr0100585,FBtr0072177 2 2 2 65 2R 19951016 19951035 CTTACAGTGCAATTCGTCTC 58 19951063 19951081 GTAGAAGTCCTCGATGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Phm FBgn0019948 FBtr0072203,FBtr0072202 1 2 2 100 2R 19873907 19874867 ATTCCCAGATCGTATACGC 59 19873825 19873843 AAGGTACTTGATTGGCGAG 59 NA Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 1 8 8 80 2R 19817553 19817571 GGATATCATGGAGAAGCCC 59 19817427 19817509 CCAATAGCCATGTAACGGA 59 NA Drosophila melanogaster 50 shu FBgn0003401 FBtr0072237 2 1 1 101 2R 19729909 19729927 TGAGCTCACTGAACTACTG 58 19729751 19729770 TGTTGTAAACGATCATCAGG 57 NA DesignNoJunction Drosophila melanogaster 50 retn FBgn0004795 FBtr0072072,FBtr0072073 1 2 2 95 2R 19530074 19530094 CTACACAGCATTCCAAATCTC 59 19530151 19530293 ATAGTCCTGTTCCATCAGG 58 NA Drosophila melanogaster 50 CG3530 FBgn0028497 FBtr0072028,FBtr0112940,FBtr0072029 1 3 3 84 2R 19279314 19279332 CTTTCGTCATTCCCAAGGA 59 19279181 19279266 AATTTGTTGATGGACACCG 58 NA Drosophila melanogaster 50 yellow-d2 FBgn0034856 FBtr0072012 2 1 1 60 2R 19269580 19269598 GTGTCTACCACTCTAACGC 59 19269620 19269640 GAGAGTGGAAATACATCATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dox-A3 FBgn0000487 FBtr0071957 2 1 1 191 2R 18954289 18954370 GAGGATAAGGTTGACCAGAC 59 18954524 18954542 GGTAATGATGACCTCCACG 59 NA Drosophila melanogaster 50 fd59A FBgn0004896 FBtr0071898 3 1 1 74 2R 18756702 18756723 CCATACTACAAGGACAAATTCC 58 18756758 18756776 TATGAAGCAGTCGTTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mes4 FBgn0034726 FBtr0071827 3 1 1 68 2R 18299680 18299698 GATCCGGATCTGCATATGG 59 18299729 18299748 TATGAATAGTTCCACTGCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11206 FBgn0034720 FBtr0071846,FBtr0113106,FBtr0071847 2 3 4 145 2R 18222380 18222458 GAAAGGATCTCAGAGCTCC 59 18222253 18222271 TGGTTGCGTATATTCCTCC 59 NA Drosophila melanogaster 50 CG18870 FBgn0042180 FBtr0071688 1 1 1 123 2R 17503365 17503383 ATTGGAACTGCATAACGGT 59 17503193 17503211 CTATCATCGTAGTGCACCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30286 FBgn0050286 FBtr0071696 1 1 1 138 2R 17423682 17423764 CGGTGGAGTATAAAGTTCAC 57 17423563 17423581 TTTAGGATGTGGTTTGCAG 57 NA Drosophila melanogaster 50 Sdc FBgn0010415 FBtr0071706 1 1 3 128 2R 17286781 17286799 AAGATCCGGACTATTCTGG 58 17286080 17286689 TATGAGCTGTGTTTATGCC 57 NA Drosophila melanogaster 50 CG30387 FBgn0050387 FBtr0071597,FBtr0071595,FBtr0071596 3 3 3 80 2R 17194842 17194917 GTCTTAAAGGAGGATCAGC 57 17194961 17194979 CATTGTATTGGAAACGCTG 57 NA Drosophila melanogaster 50 CG9752 FBgn0034614 FBtr0071616 1 1 1 60 2R 17182200 17182218 AGTTTGGAGTACACCAGTG 59 17182158 17182178 CGTTCTCCAGAATAGTATCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30291 FBgn0050291 FBtr0071549 1 1 1 83 2R 16896815 16896833 CACAGGAAGATTAGCAACG 58 16896699 16896769 GTAGTTGATATTTGTCCGGG 58 NA Drosophila melanogaster 50 CG13868 FBgn0034501 FBtr0086298 2 1 1 95 2R 16199010 16200538 AGGCCATTGTATGGATCAG 59 16198933 16198951 CTGATCAGACTAATCCGGC 59 NA InUTR Drosophila melanogaster 50 CG9864 FBgn0034490 FBtr0086320 1 1 1 82 2R 16136023 16136041 ATTAACTGTGTTGGCACCA 59 16135894 16135977 TGATCGATTGTGTTCTCGT 59 NA Nonspecific Drosophila melanogaster 50 CG17821 FBgn0034383 FBtr0086642 2 1 1 132 2R 14631985 14632006 CCATGTTGATCTACAACTTCTG 59 14631806 14631824 TTATCTGGATGATCCGAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG5323 FBgn0034362 FBtr0086706 1 1 1 107 2R 14502924 14502942 TACGTTCAACACGAATTGG 58 14503110 14503128 CTGATCCTCATTGGGACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18540 FBgn0034326 FBtr0086762 3 1 1 61 2R 14187065 14187083 ATTTCAAGGTCGGAATTCG 58 14187105 14187126 CTATCGTCCACATCAATATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17680 FBgn0062440 FBtr0086781 3 1 1 174 2R 14035292 14035311 ATAACCTAAGGATCCTGCAG 58 14035137 14035155 TTCTCCTCCAGAAAGTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 grh FBgn0004586 FBtr0090012,FBtr0090008,FBtr0090007 2 3 6 147 2R 13726588 13726606 CAAACGAAAGATGACAGCC 59 13726715 13726828 GTAGAAGCTCTTCTCCATGTC 59 NA Drosophila melanogaster 50 grh FBgn0004586 FBtr0090009,FBtr0090008,FBtr0090007,FBtr0090010 1 4 6 191 2R 13696982 13697000 CGGATCAGAAGAGTTTGGA 58 13697155 13708518 CATTGAGCTTTCCACTCTG 58 NA Drosophila melanogaster 50 CG6410 FBgn0034265 FBtr0086885 3 1 1 167 2R 13613099 13613117 AATTGAGCATCTGAAGCTG 58 13612891 13612910 TTTATTCCCAAACTGTCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 Dek FBgn0026533 FBtr0100437,FBtr0100438,FBtr0100440,FBtr0100436 1 4 4 93 2R 12746185 12746203 AGATTTCTCCAGCTCTGAC 58 12746260 12746340 AGGATTGTAATCTGAGCCC 58 NA Drosophila melanogaster 50 CG5348 FBgn0034156 FBtr0087022 2 1 1 90 2R 12655974 12656056 CTTATCACTGGGTGTTTACCA 59 12656108 12656126 ACCTCCAGTACTGTATCGA 58 NA Drosophila melanogaster 50 unc-104 FBgn0034155 FBtr0113088,FBtr0113087,FBtr0087079,FBtr0113089 1 4 4 80 2R 12650303 12650322 CCATGATATGCAAGGATCTG 58 12650186 12650260 TATAGGAAACCTCAACCGA 57 NA Drosophila melanogaster 50 CG5065 FBgn0034145 FBtr0087108 1 1 1 80 2R 12507179 12508835 TGGATTTATGGGAAAGGTACTG 59 12508870 12508894 GGTCGTATCAGTAGATAGATATTCC 59 NA Drosophila melanogaster 50 Syn2 FBgn0034135 FBtr0087093,FBtr0087094,FBtr0087097 2 3 5 87 2R 12442916 12442934 ATCAGTCGCAGTTGTAGTC 59 12442985 12443124 CCATCATTAGAGGTACGGC 59 NA Drosophila melanogaster 50 CG15701 FBgn0034095 FBtr0087131 1 1 1 155 2R 12120369 12120476 ACAAGGAAGTTCAGTACGC 59 12120594 12120613 GATAGCTCCTCAGATCACAG 59 NA Drosophila melanogaster 50 Tsf3 FBgn0034094 FBtr0087130 2 1 1 109 2R 12115369 12115387 CACGCCAATATCCATACTG 58 12115459 12115546 GCAGCTTCAAAGTAATTAGC 57 NA Drosophila melanogaster 50 Lis-1 FBgn0015754 FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240 1 6 6 63 2R 12070571 12070592 GCTCAAATGATCAGACAATACG 59 12070615 12070701 CGTAATTCAACCTTGCAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG30094 FBgn0050094 FBtr0087233 3 1 1 78 2R 12030039 12030057 ATAACCTCTGCGACTATCC 58 12030098 12030117 AATCTCTTCTTGCAATGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rho1 FBgn0014020 FBtr0087211,FBtr0087215,FBtr0087214,FBtr0087212,FBtr0087217,FBtr0087213,FBtr0087216 2 7 7 82 2R 11993293 11993373 CACAATTCGGGATCTAGCA 59 11993419 11993437 AGGCATTAATCTTCTCGGC 59 NA Drosophila melanogaster 50 Ranbp11 FBgn0053139 FBtr0087278 1 1 1 60 2R 11571156 11571174 CGCTATGAACTGAAAGTGG 58 11571198 11571216 CCAATTCGGTGAGTATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30475 FBgn0050475 FBtr0087427 2 1 1 298 2R 10839406 10839424 ACCATCATAGTCACCACAG 58 10838912 10839144 CGAAACAGCCATAACTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG12859 FBgn0033961 FBtr0087440 2 1 1 127 2R 10644342 10644360 ACTACGAACACTTCAAGCC 59 10644451 10644469 AGTCCTGTACTTCTCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AttB FBgn0041581 FBtr0087438 2 1 1 92 2R 10636857 10636875 GTTCCTTAGCCTCCAATCC 59 10636930 10636949 CCTGACCTACCACATTATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17386 FBgn0033936 FBtr0087488 2 1 1 60 2R 10310291 10310311 TTTCGCCTATATCTTCTGCTG 59 10310333 10310351 CTGCTTATACCAGACACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fl(2)d FBgn0000662 FBtr0087648,FBtr0087647 1 2 2 101 2R 9708864 9708946 GACTATGTGAGCCAAATTGC 59 9708782 9708800 CTCGAACAGGAGATTGACC 59 NA Drosophila melanogaster 50 CG33156 FBgn0053156 FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681 2 5 5 83 2R 9436514 9436533 ATTATGGTGACTCCCATCTG 58 9436391 9436470 TACTGATATCTTCAGCTCCAC 58 NA Drosophila melanogaster 50 Aats-val FBgn0027079 FBtr0087734,FBtr0087735 3 2 2 82 2R 9089460 9089478 ATCACGGAGGAACTTTACC 58 9089523 9089606 GATGTATTGCTGGGATAGCT 59 NA Drosophila melanogaster 50 CG34439 FBgn0085468 FBtr0112740 2 1 2 86 2R 9046597 9047045 TACAAGATGAACGGTCTGG 58 9047094 9047113 TGCACTTAAGCTTAAACGGA 59 NA InUTR Drosophila melanogaster 50 CG13323 FBgn0033788 FBtr0087797 1 1 1 60 2R 8934624 8934642 GCAATAACAACGACTACCT 57 8934582 8934600 TTGTTCTTGATCGGATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Amph FBgn0027356 FBtr0087828 1 1 1 97 2R 8497300 8497319 GTAGTTAATAGGCACAGCGT 59 8497379 8498099 TCAGCAGTATTGGCATCAG 59 NA Drosophila melanogaster 50 CG8888 FBgn0033679 FBtr0088022 1 1 1 133 2R 7964562 7964580 TGCTCTTCTATCACTTCGT 57 7954095 7954113 GTTGAATCCTGCGTAAACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8889 FBgn0033675 FBtr0088026,FBtr0088025 1 2 3 128 2R 7914646 7914729 AGAAACAGATTAGTGTGCC 57 7914480 7914555 CGTGCAATTATCTAGTTTGC 57 NA Nonspecific Drosophila melanogaster 50 CG34228 FBgn0085257 FBtr0112421 3 1 1 69 2R 7539546 7539567 TGGATATCTGACAAATACACCC 59 7539665 7539683 CTTCTGTCAACCGTTTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lambdaTry FBgn0043470 FBtr0088121 1 1 1 60 2R 7224701 7224719 ATTCATCCCAAGTATCGCA 58 7224743 7224761 CATCCAGGATCAGAATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dare FBgn0015582 FBtr0088176 1 1 1 117 2R 7179486 7179560 TGCTTTGAAGACTACGGAC 59 7179387 7179405 CTTAATGGTGAAGGCAGCT 59 NA Drosophila melanogaster 50 CG12391 FBgn0033581 FBtr0088205 1 1 1 60 2R 7036372 7036391 TCATCTGTCCTAATGTCTCG 58 7036331 7036349 TTGGTGCATATGAATTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12943 FBgn0033572 FBtr0113065 1 1 2 111 2R 6792368 6792558 CCACAGGATGAAATTTATCCTC 58 6792629 6792648 CTACGTACTCAATTAGCGTG 58 NA Drosophila melanogaster 50 CG30015 FBgn0050015 FBtr0088243,FBtr0113356,FBtr0113357,FBtr0088242 1 4 4 156 2R 6730705 6730725 GATATACTGCGATCACATCAC 58 6730477 6730588 GAATGGAAGTCTCCAATGTC 58 NA Drosophila melanogaster 50 CG33476 FBgn0053476 FBtr0088319 3 1 1 61 2R 6298049 6298067 GGACCATTCTGTGGATCAG 59 6297918 6297938 GGGATTCCATGATAAACTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414 1 10 10 69 2R 5991854 5991872 TGTCGACAGTCGATAAGGA 59 5991904 5992230 TCATCGTAACGTTCTGACTG 59 NA DesignRelaxed Drosophila melanogaster 50 Su(var)2-10 FBgn0003612 FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578 3 9 9 80 2R 5005943 5006018 GGTCATAGATGGCTACTTCC 59 5006058 5006079 TCCTGATGAAGTTGAATCTCAG 59 NA Drosophila melanogaster 50 tsu FBgn0033378 FBtr0088567 1 1 1 60 2R 4998777 4998798 CGGAGAAATCAAGAACATTCAC 59 4998819 4998837 GTATCCCTTTGAGAACCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8083 FBgn0025709 FBtr0088560,FBtr0088562 2 2 3 149 2R 4967667 4967743 TGGATCATAAGGAGTTGGA 57 4967856 4967874 GCAGCAGTACATAAATCGA 57 NA Drosophila melanogaster 50 CG8252 FBgn0033344 FBtr0088682 2 1 1 60 2R 4797189 4797209 CTATTGAAGCATTATCCCGTG 58 4797149 4797167 AGTAGAGCGTGTTGTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30349 FBgn0050349 FBtr0088650 3 1 1 115 2R 4795880 4795898 CTTGGCCTACTGTCTAACC 59 4795977 4796050 CTGCGGATAAACTGTTCAC 58 NA Drosophila melanogaster 50 Dmn FBgn0021825 FBtr0088641 3 1 1 130 2R 4780401 4780419 ACGGAACTATACGACATCG 58 4780579 4780597 ATCTCTGCGATGATCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Dmn FBgn0021825 FBtr0088641 1 1 1 127 2R 4780404 4780422 GAACTATACGACATCGCGA 59 4780579 4780597 ATCTCTGCGATGATCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Rya-r44F FBgn0011286 FBtr0088640,FBtr0088638,FBtr0088637,FBtr0088639 1 4 4 81 2R 4772298 4772385 GTTGTTAACGGCACTATTGG 59 4772426 4772447 AGTACTTAAGAATCAGCTCCAC 59 NA Drosophila melanogaster 50 sns FBgn0024189 FBtr0111043,FBtr0088635 1 2 2 82 2R 4718009 4718027 TATCATCTGTGACTCGAGC 58 4718072 4718386 TATTAATGCCTTCGATGGGT 58 NA Drosophila melanogaster 50 stmA FBgn0086784 FBtr0088715,FBtr0100111,FBtr0088716 1 3 3 112 2R 4618186 4618264 TTTATCCTCGGAATCCAGC 59 4618092 4618110 CTAACACGCGAGATTAGCA 59 NA Drosophila melanogaster 50 CG14767 FBgn0040777 FBtr0088720,FBtr0088719 2 2 3 151 2R 4607469 4607487 GGAGATGATGGACGAACTG 59 4607278 4607355 TATCGAAGTTCTGGTAACGC 59 NA Drosophila melanogaster 50 CG8726 FBgn0033244 FBtr0088873,FBtr0088874 2 2 2 80 2R 3858088 3858106 CAAGTGGCTACATATGGGA 58 3857969 3858045 ATGTAGATGACCATATGCGT 58 NA Drosophila melanogaster 50 CG30377 FBgn0050377 FBtr0088844 1 1 1 96 2R 3794939 3801869 CTCTGTCCTATCCATCCTC 57 3801929 3801947 AACTTCTTCTCCTTCTCCA 57 NA Nonspecific Drosophila melanogaster 50 pwn FBgn0003174 FBtr0088962 1 1 1 80 2R 3186191 3186210 AAGGTGAACAACATCTACCG 59 3186253 3186330 TTCATCCAGCTTGATGGTC 59 NA Drosophila melanogaster 50 CG33140 FBgn0053140 FBtr0089046 1 1 1 60 2R 3068077 3068098 CACTCTATATCCAAACCTACTC 57 3068119 3068137 ATAACGGACACAATGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp42Eo FBgn0033136 FBtr0089035 1 1 1 86 2R 2943743 2943944 CTTATTGGCTACGAGGTCG 59 2943994 2944012 TTAGTAGGTGTAGCGACGA 59 NA Drosophila melanogaster 50 Pld FBgn0033075 FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997 3 6 6 81 2R 2141752 2142360 ACATTCAGGGTTACTTGGT 58 2142405 2142423 CCCTCCTTACTAGTTCCAG 58 NA Drosophila melanogaster 50 EcR FBgn0000546 FBtr0086008,FBtr0086010,FBtr0086009 2 3 5 106 2R 2039493 2039583 GACTTGATGTTACCGAGGA 58 2039405 2039423 GTTGTAGCTGTGATTCTGC 58 NA Drosophila melanogaster 50 CG7845 FBgn0033059 FBtr0086023 2 1 1 60 2R 1962573 1962591 TTTGATCAGATGCCCACTG 59 1962468 1962489 TATTAGACATCTCTTCCTCGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG30438 FBgn0050438 FBtr0086068,FBtr0086069,FBtr0086070 3 3 4 98 2R 1414858 1414876 GGACATCCTAATGGCTACG 59 1416315 1426768 AAGGTAATATTGTGACCTCTGG 59 NA Drosophila melanogaster 50 CG30438 FBgn0050438 FBtr0086068,FBtr0086069,FBtr0086070 1 3 4 96 2R 1414858 1414876 GGACATCCTAATGGCTACG 59 1416314 1426766 GGTAATATTGTGACCTCTGGA 58 NA Drosophila melanogaster 50 Atf6 FBgn0033010 FBtr0086081,FBtr0086079 1 2 3 153 2R 1036542 1036563 CAACGTATGATTAAGAACCGAG 59 1040308 1040327 GCAGAAATATCTGATCCCGT 59 NA DesignNoJunction Drosophila melanogaster 50 gus FBgn0026238 FBtr0089756,FBtr0089754,FBtr0089755,FBtr0089752,FBtr0089757,FBtr0089753 1 6 6 61 2R 1005304 1008282 TTGGTGGATTAGATCCCGA 59 1005261 1005279 TTGACGAATTGTTCTTCGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG17486 FBgn0032997 FBtr0111293 1 1 1 60 2R 507999 508017 GATGACCGCATTATTGCAG 59 508040 508059 AGTTCTCTTCGATGAATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:Q:34E FBgn0028909 FBtr0080609 1 1 1 60 2L 14010614 14010635 GTTCTATGGTGTAATGGTTAGC 58 14010575 14010593 GAGATTTGAACTCGGATCG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2528 FBgn0032969 FBtr0085948 1 1 1 60 2L 21992254 21992272 GCAAGGGATTCTTCTATGG 57 21992212 21992233 GTTTCTGATCCGTCAAATATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cul-2 FBgn0032956 FBtr0085900,FBtr0085899 3 2 2 88 2L 21662617 21662694 GCCTTAATACAAGAGGTTCTC 58 21662744 21662762 TCAATTAATGACTCCACGC 57 NA Drosophila melanogaster 50 His2B:CG33902 FBgn0053902 FBtr0091906 1 1 1 61 2L 21452690 21452708 AAGAACATCACCAAGACCG 59 21452647 21452665 TAGATGGCATAGCTCTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 clumsy FBgn0026255 FBtr0110895 3 1 2 102 2L 21210450 21210469 CACATTGGAGTACAATGTGG 58 21210534 21210823 ATACGGAGAATTGAAGGGC 59 NA Drosophila melanogaster 50 CG31627 FBgn0051627 FBtr0081474 1 1 1 60 2L 21173395 21173413 ACTTAAGCGTCAGGAACAG 59 21173437 21173455 ATAAGTGTAGGAGCCTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9246 FBgn0032925 FBtr0081472 3 1 1 60 2L 21164019 21164039 AGGAAGATACGGTAACTAAGG 58 21164060 21164079 TTGTGGTACTTCTCTTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CheB38b FBgn0067311 FBtr0081454 3 1 1 81 2L 20816719 20816796 AAAGTGAAAGATACCGTGC 58 20816656 20816677 CCTGTAAGTTTGAGGTATTGAC 58 NA Drosophila melanogaster 50 szar FBgn0032885 FBtr0089947,FBtr0089945,FBtr0089946 2 3 3 130 2L 20790493 20790511 CATTACTGCCGAATCTGAC 58 20790326 20790399 GCTTCGAGATTCTTGTTCC 58 NA Drosophila melanogaster 50 sNPF FBgn0032840 FBtr0081327,FBtr0081326 2 2 2 93 2L 20055044 20055062 GAAGTCCGTAAACCAATGC 59 20055185 20055203 GGATGGATGAGGTTTCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 sNPF FBgn0032840 FBtr0081327,FBtr0081326 3 2 2 97 2L 20055039 20055057 AAAGGGAAGTCCGTAAACC 59 20055184 20055202 GATGGATGAGGTTTCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Cyt-b5-r FBgn0000406 FBtr0080932 2 1 1 60 2L 16789520 16789539 TTCTTCATACAAATGGGCAC 58 16789407 16789425 AGTAGAGGATGTTGGTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 VhaSFD FBgn0027779 FBtr0080941,FBtr0080940,FBtr0080942 3 3 3 144 2L 16724969 16724987 GAATACATCCAGTCGGTGG 59 16724779 16724861 TCAACTGGTATTGCACCTG 59 NA Drosophila melanogaster 50 cni FBgn0000339 FBtr0080849,FBtr0080848 2 2 2 101 2L 16309918 16310008 CATATACGGCATGGTTTATTCG 59 16309838 16309858 TAGACAACTAATACACGACGC 59 NA InUTR Drosophila melanogaster 50 CG4891 FBgn0028520 FBtr0080815 2 1 1 60 2L 16095417 16095436 CTGGACAATATTCGGAACTC 58 16095457 16095477 TTCCGTATATGTTATCCGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yuri FBgn0045842 FBtr0100611,FBtr0080709,FBtr0100610,FBtr0100612 2 4 7 82 2L 15258832 15258852 CAATAGCTACTCCGATTTCAG 58 15258698 15258791 GGGATAGATCACAATTCTTCTG 58 NA Drosophila melanogaster 50 CG3491 FBgn0028887 FBtr0080675 3 1 1 132 2L 14929652 14929726 CTAGCCAAATACCGAAAGG 57 14929822 14929840 TTCCGTTTGATACATCCGA 58 NA Drosophila melanogaster 50 CG4701 FBgn0028868 FBtr0080672 1 1 1 60 2L 14766268 14766288 GAGGACATTGATATCAGTTGG 58 14766310 14766328 TAAGCTCCTGAATAGTCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32970 FBgn0052970 FBtr0114461,FBtr0080622 1 2 2 79 2L 14309126 14309144 CAACACTTTATACCGCTGC 59 14309420 14309438 TTAGGCTGGCTTTCTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31769 FBgn0051769 FBtr0080602 1 1 1 60 2L 14110040 14110059 GGATAGTGATAGATGGCTGC 59 14109999 14110017 AGGCAAAGTTACGATAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 He FBgn0028430 FBtr0080616 2 1 1 60 2L 13972472 13972493 GTACACAGATTTCTGACTTCAC 59 13972433 13972451 AATATCTTTGCTGTCGTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34003 FBgn0054003 FBtr0100058 2 1 1 79 2L 13967622 13967643 CGATGGTTATGTGAATAAGGGA 59 13967564 13967582 ACAATCCATTGGAGCAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Smg5 FBgn0019890 FBtr0080562,FBtr0080561 1 2 2 97 2L 13903705 13903788 CTTTACAGATCCCTCTACACC 59 13903628 13903646 TTCTCTTCGATTTCGTGCT 59 NA Drosophila melanogaster 50 Vm34Ca FBgn0003983 FBtr0080521 1 1 1 183 2L 13411507 13411525 AAGGAGGATAAGATGCTCG 58 13411342 13411360 TGAACAGGTAGTTCTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 prd FBgn0003145 FBtr0080299,FBtr0080298 3 2 2 64 2L 12084162 12084180 TACGATTTCTACGGCAGTC 59 12084116 12084134 TTACTACTGGCCATTGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4983 FBgn0032371 FBtr0080253 3 1 1 60 2L 11652956 11652974 TTTCAACAACGAAGCTGTC 58 11652998 11653016 AAAGAGTCCTTTGAAACCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12517 FBgn0032311 FBtr0080144 3 1 1 62 2L 10870276 10870294 ATCATCTGTATCGAACGCT 58 10870320 10870338 ATTATCCGTCCAGGATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dnz1 FBgn0027453 FBtr0080181 1 1 1 107 2L 10855448 10855663 GTTGCGAATGATTCACTCG 59 10855359 10855377 GTCTCGTCGTACAGAATCG 59 NA Drosophila melanogaster 50 CG13144 FBgn0032260 FBtr0080037 1 1 1 83 2L 10491188 10491206 CTTCACAAAGTCGTTGTCG 59 10491123 10491141 TCCTTGGCCCTTAAATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6206 FBgn0027611 FBtr0080031,FBtr0080030 1 2 2 80 2L 10460456 10460476 CACGGTTAATGAGTATGTGAG 58 10460518 10460596 CTTTCCAGAGTAACACCCT 58 NA Drosophila melanogaster 50 CG5096 FBgn0032235 FBtr0080006,FBtr0113034 2 2 2 130 2L 10383792 10383875 TTGGCGACAATGTATTTCC 58 10384031 10384050 GTCGGACAATATCAGTTCAG 58 NA Drosophila melanogaster 50 CG5384 FBgn0032216 FBtr0080061 1 1 1 86 2L 10312898 10312970 ATTCGAACTTACTTGGTGAG 57 10312831 10312849 ATTTATGCCCTCCTTTCCT 58 NA Drosophila melanogaster 50 CG31878 FBgn0051878 FBtr0079881 3 1 2 100 2L 9930314 9930612 TGAGTCTCGAGTTTACAACTC 59 9930787 9930805 CATATTGGGCAGGACTAGC 59 NA Drosophila melanogaster 50 scat FBgn0011232 FBtr0079809 1 1 1 60 2L 9433071 9433091 GTTGTAGACAGCTTCAAAGTG 59 9433113 9433131 GTGTGAGGTTATAGTGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ggamma30A FBgn0028433 FBtr0079796,FBtr0079797,FBtr0079795 1 3 3 82 2L 9272595 9291061 AATCCATAGCAGAAATGCG 58 9291107 9291125 ATTGTTCTTCTTATCCGGC 57 NA Nonspecific Drosophila melanogaster 50 CG32985 FBgn0052985 FBtr0079757 2 1 1 90 2L 8963274 8963358 ATGGGCTACAATAAGGTCG 59 8963412 8963430 AAATTTGAGTCTCTGCCGA 59 NA Drosophila melanogaster 50 Tsp29Fb FBgn0032075 FBtr0079755,FBtr0079756 3 2 2 139 2L 8939019 8939127 CAATCTATGCTAGAGTGTTGC 58 8939228 8939246 TTCAGACTTGTTGGTTGGT 59 NA Drosophila melanogaster 50 CG32987 FBgn0052987 FBtr0079735 2 1 1 60 2L 8864067 8864087 GATATGCATGCATTGTATCCC 59 8864108 8864127 TGTCATGAACCACTTACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9296 FBgn0032059 FBtr0079750 1 1 1 60 2L 8685391 8685409 CCAGTTTCTACGACAACGA 59 8685349 8685367 TAAATGTAGTACAGGCGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6441 FBgn0031920 FBtr0079450 1 1 2 89 2L 7475864 7475945 CTTTACAGATACGAAGACTCTC 57 7475995 7476013 CTCATCTACCTCCATAGCT 57 NA Drosophila melanogaster 50 smt3 FBgn0026170 FBtr0079356 2 1 1 242 2L 6967247 6967265 CATCAACCTGAAGGTCCTC 59 6967023 6967041 TAATCTTATGGAGCGCCAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG17378 FBgn0031858 FBtr0079336 1 1 2 100 2L 6775886 6775974 TACCCAAGTTTGACGAGAG 58 6776036 6776056 ATATCGTCCTGAGATGATCTC 58 NA Drosophila melanogaster 50 CG9044 FBgn0031752 FBtr0079149 2 1 1 108 2L 5951986 5952064 GTTAACTGAAAGGACGAAAGC 59 5952134 5952152 TTTATCCTTGCGCATTGTG 59 NA Drosophila melanogaster 50 CG8892 FBgn0031664 FBtr0079045,FBtr0079046 2 2 2 60 2L 4980268 4980287 CTTTATTCAGGAGGATGCAC 58 4980227 4980245 GTCATCATCGATGTACGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3036 FBgn0031645 FBtr0077391 2 1 1 115 2L 4902799 4902817 ATATTGCACCGAACTTTGG 58 4902894 4902982 GAAGGATTGATCCTTGTAGGT 59 NA Drosophila melanogaster 50 CG17612 FBgn0031597 FBtr0077464,FBtr0077463 3 2 2 60 2L 4382273 4382291 GCAAATAACGACGTGATCC 59 4382231 4382251 GATCCTCAAGAATTACCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33282 FBgn0053282 FBtr0113458 1 1 1 151 2L 3328161 3328179 CTTTGAAGTGAATCTCGCC 58 3328294 3328369 TCCAGATACACGCATATGG 58 NA Drosophila melanogaster 50 CG34393 FBgn0085422 FBtr0112637 1 1 1 88 2L 3189484 3189986 ATAAGCAGAAGAAGTGGGAC 59 3189415 3189433 ATAGGTTTCCAGGTTGCAC 59 NA Drosophila melanogaster 50 CG9894 FBgn0031453 FBtr0077713 2 1 2 103 2L 2753623 2753641 CAAAGGAATCCGTGAAAGG 58 2756055 2756073 TTCCTCATCGGAATCTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 ia2 FBgn0031294 FBtr0089789,FBtr0089790 1 2 2 80 2L 1014711 1014792 GTATCACATCTATGAGGTTCAC 58 1014652 1014671 TTCTTCAGGTAGAAAGAACG 57 NA Drosophila melanogaster 50 CG31973 FBgn0051973 FBtr0113416,FBtr0078163,FBtr0078164 3 3 4 93 2L 38598 38618 CGATGGTATTATTCACCAAGC 59 35203 38543 CGACTCAACTCTATAGGCG 59 NA Drosophila melanogaster 50 CR32660 FBgn0052660 FBtr0073592 1 1 1 93 X 11814507 11814525 TTCAGTTTGCTTTCAGAGC 58 11814360 11814451 CGCATGAAACTCAATTACAC 57 NA Nonspecific Drosophila melanogaster 50 CG41105 FBgn0069939 FBtr0111201 1 1 2 100 X 22268776 22269590 ATGGACTATTCCTGGAGTG 58 22269654 22269672 AAAGTCGTAGATGGACAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32511 FBgn0052511 FBtr0077258 1 1 1 81 X 21027661 21028075 AACGATTAACGCTCCTCTG 59 21027598 21027616 GTAGTAGGCTCCATTGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 stg1 FBgn0064123 FBtr0091649 2 1 1 60 X 20977749 20979135 AATACCCTATACGGTCACCA 59 20979157 20979176 CACTAGAAATACACCAGCAG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15452 FBgn0031130 FBtr0077292 2 1 1 136 X 20616430 20616708 GATTCGCAACGCATTAAGG 59 20616312 20616330 CTTAGTGGATTGTGCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9571 FBgn0031086 FBtr0070032 1 1 1 60 X 19985701 19985722 CCTCATTCTCATTTCATTCAGC 59 19985662 19985681 TATGATGATATGGCTCCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18809 FBgn0042132 FBtr0074811 2 1 2 284 X 19637732 19638305 TAACAACAAAGGCGAATCC 58 19636915 19637485 GTAGTGATGATTTGTTTGCG 57 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 gfA FBgn0086778 FBtr0074681,FBtr0074679,FBtr0074680 3 3 3 81 X 19236629 19236776 TACTGATGTACAACAGTGCC 59 19236567 19236585 AGACAGCTCCCATTATTGC 59 NA Drosophila melanogaster 50 CG32536 FBgn0052536 FBtr0074686 3 1 1 97 X 19169554 19170520 ACTTCTTCAGTGAGCTGAC 59 19169475 19169493 AAAGTCACTTTGTTGGCTG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7453 FBgn0030991 FBtr0074667,FBtr0074666 1 2 2 63 X 19074922 19074940 CTGATATACACCAGGAGGG 58 19074967 19074985 GTACCTGGCTTATCCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12609 FBgn0030952 FBtr0074605 2 1 2 60 X 18641984 18642002 GTATCAGATGACTTCCGGC 59 18641942 18641962 AAATCGATCAACGTAGTAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 e(y)1 FBgn0000617 FBtr0074463 3 1 1 90 X 17736365 17736383 TCATGTCCATCCTGAAGGA 59 17736437 17736519 CAGGTTACATAGCGGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 f FBgn0000630 FBtr0110991,FBtr0074423,FBtr0074420,FBtr0074422 3 4 6 116 X 17166633 17166651 ATACAACGTAGGACGATCC 58 17166731 17166935 TTGTTCAAATGGTGGTTGC 59 NA Drosophila melanogaster 50 CG8260 FBgn0030684 FBtr0074089 1 1 2 123 X 15651251 15651353 TATCTATACGACGTTCGAGC 58 15651439 15651457 ATGTCACTAAATTCGGGCA 59 NA Drosophila melanogaster 50 Lsd-2 FBgn0030608 FBtr0073967 1 1 3 260 X 14968210 14968228 CAGGAGATCTACAACCAGG 58 14967423 14967989 ATCATTATCTTCCTCGACATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1673 FBgn0030482 FBtr0073777 3 1 1 249 X 13293732 13293751 TACTTTAAGACAGGCTCGTC 59 13293962 13294048 GTTCTTGTTCTCCTTGATCG 58 NA DesignRelaxed Drosophila melanogaster 50 mew FBgn0004456 FBtr0073731,FBtr0073732 2 2 2 83 X 13109887 13109963 AATAACATAGAGGTGGAGACG 59 13109824 13109842 GATGATAATCAGCCACGGT 59 NA Drosophila melanogaster 50 CG15728 FBgn0030409 FBtr0073674 2 1 1 125 X 12521534 12521555 CGGTTTGATGGTTTATCTACTC 58 12521641 12521723 CATACCTGGTGGATATGGC 59 NA Drosophila melanogaster 50 CG32662 FBgn0052662 FBtr0073564 1 1 1 60 X 11726179 11726197 CGGTATACATTACCCTGGA 57 11726219 11726239 GAGTTATTCGATGTAGAGGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32663 FBgn0052663 FBtr0073563 1 1 1 80 X 11720806 11720901 AATCTGGATCGTACAGCAG 59 11720943 11720963 CATAATCCGAATCCAAGTGAC 58 NA Drosophila melanogaster 50 CG4040 FBgn0030076 FBtr0071283 1 1 1 81 X 8946414 8946494 ACATTCATATCACCCGTGAC 59 8946537 8946556 GACTTGTCGTTGTTCTTCAG 59 NA Drosophila melanogaster 50 CG3032 FBgn0029928 FBtr0071032 2 1 1 60 X 6907576 6907594 AATCCGTACGAGAACTCTG 58 6907534 6907553 GTCTTCAAGGGTTCCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14440 FBgn0029894 FBtr0070987 3 1 1 184 X 6592113 6592131 ACAACTATACCAGTTCGGC 59 6591947 6591965 GAAATTGTTCTCGAGGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3226 FBgn0029882 FBtr0070993 1 1 1 87 X 6548000 6548018 ACGGGAGATTGTCAATCTG 59 6547754 6547949 GTGCAGATATCTCTTGGCT 59 NA Drosophila melanogaster 50 CG34417 FBgn0085446 FBtr0112703,FBtr0112706,FBtr0112707,FBtr0112704 1 4 5 80 X 6446296 6446314 TATCGTACCGAAACTCTGG 58 6446703 6446721 GTTGCGACCTTTAAACTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11462 FBgn0029815 FBtr0070831 2 1 1 140 X 5734697 5734715 GTTGCTCTCAGAAGTACCT 58 5734575 5734593 TTAAACGAATCGAAAGGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15769 FBgn0029805 FBtr0070835 1 1 1 206 X 5668216 5668234 AACATCCATTGGATTCCGT 59 5667964 5668046 CATTGGAGACCCTGATGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG4151 FBgn0029770 FBtr0070779 1 1 1 60 X 5396442 5396463 TCATCAAGGACTAAGAGTTCTG 59 5396484 5396502 AGGATTCAAGTTGGGATCC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 z FBgn0004050 FBtr0100380,FBtr0070435 3 2 2 120 X 2343335 2343354 ATTGATTAAGCACCCAGAGG 59 2343497 2343517 GATCTCACTAATGATCTGCTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG4406 FBgn0023545 FBtr0070347 1 1 1 127 X 1902491 1902561 GAGGATTCCTTATCGCACC 59 1902321 1902400 AGAAATTCGCCTATGGTCC 59 NA Drosophila melanogaster 50 CG14815 FBgn0023516 FBtr0070367 1 1 2 78 X 1762864 1762882 ATTATTAGAGCGCTGTGCA 59 1762732 1762822 TGGAGATGCTACGTAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14626 FBgn0040360 FBtr0070200 3 1 1 146 X 1081152 1081894 CTCTATGTTGGTCCCACAG 59 1082002 1082022 ACTGGTTACATATGGAATGGG 59 NA Drosophila melanogaster 50 CG32017 FBgn0052017 FBtr0089206 2 1 1 80 4 1164123 1164142 ACATATAGGGATCCCTTCAC 57 1161981 1164080 GCTCATTCGTAATGATCCC 58 NA Drosophila melanogaster 50 Crk FBgn0024811 FBtr0089112 3 1 3 111 4 231097 231187 TTTCTGATAGGAACAGCTGG 59 231260 231279 ATCGAGTTACTATCACGGAC 58 NA Drosophila melanogaster 50 snoRNA:Psi18S-1377a FBgn0086665 FBtr0091751 1 1 1 60 3R 26033523 26033542 TAATGGCAGCTTATCACTCC 59 26033482 26033501 GAAAGTAATGCAGTAACCGT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Acf1 FBgn0027620 FBtr0085845 3 1 1 84 3R 27624346 27624423 AAGACGAGTCAGATGAGGA 59 27624471 27624489 AAGAATAGCCTGCATTGCA 59 NA Drosophila melanogaster 50 Cpr100A FBgn0039805 FBtr0085710 1 1 1 164 3R 26693872 26693953 AATGGTTTCCAAGCTTCTG 58 26694081 26694099 ATCTCCGTAGTCATTGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31013 FBgn0051013 FBtr0085671 2 1 1 86 3R 26470934 26471014 CAGTACAATGACAGCATGAG 58 26470867 26470885 TTGAATAGCATCCGATGGT 58 NA Drosophila melanogaster 50 CG7816 FBgn0039714 FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921 2 6 6 80 3R 25690545 25690625 AGGGCGATAATCAAGATCC 58 25690483 25690501 TCGTGAAGATCAGTATGCC 59 NA Drosophila melanogaster 50 CG1443 FBgn0039620 FBtr0085345 1 1 1 294 3R 24819799 24819817 AATGCTCTGTTAGCCAGTG 59 24819398 24819477 AGATCTTCATCATTCTGGGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG5514 FBgn0039560 FBtr0085252,FBtr0085253 2 2 2 110 3R 23765357 23765436 ATTACCTTCGAAGGTACTGAG 58 23765508 23765526 TATGTTTGCCTTCACCTCC 59 NA Drosophila melanogaster 50 mRpS22 FBgn0039555 FBtr0085247 3 1 1 62 3R 23743320 23743338 GTTCATCCTGGATCGACTC 59 23743364 23743382 GAAATGTTGTGGAACTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dsd FBgn0039528 FBtr0085201 1 1 1 81 3R 23425391 23425409 CGATTGTTCGTCGAAATGG 59 23425267 23425285 CAATACTTTCGCGGTTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 mrt FBgn0039507 FBtr0085174 3 1 1 136 3R 23104813 23104908 TTGATATAGGCTATGAGACGAC 58 23104698 23104716 CACTATAAACGGCAAGTGG 58 NA Drosophila melanogaster 50 Tsp97E FBgn0039465 FBtr0085082 1 1 2 103 3R 22788171 22788895 CTTCAGCTTCACTGAGGTC 59 22788086 22788104 AATAATCGTGCGGAAAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14250 FBgn0039448 FBtr0085049 3 1 1 223 3R 22519058 22519231 GTTACTCTTACTCATTGCTTCC 58 22518856 22518874 AGAACTCCTTGCTGAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 E(spl) FBgn0000591 FBtr0084961 3 1 1 90 3R 21866373 21866391 AAATCGGTGATGACTCACC 59 21866445 21866463 TCGAGTTCTGGATGAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5079 FBgn0039346 FBtr0084883 3 1 1 76 3R 21439880 21439898 CATCTCATCAGGAAGTGCA 59 21439937 21439956 ATTTGCTGTCTGAAGTTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4582 FBgn0039344 FBtr0084896 2 1 1 65 3R 21408234 21408252 GGTGAATCTCTACGATGCC 59 21407988 21408205 ATTCTGGTGGGATTGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 bam FBgn0000158 FBtr0084869 1 1 1 88 3R 21069704 21069783 GGACAAGTTCCATACTCAG 57 21069634 21069652 TAAATACGTGCACACTGAG 57 NA Drosophila melanogaster 50 mld FBgn0083077 FBtr0111013,FBtr0111012 1 2 2 291 3R 20445546 20445564 GTATAAGCCAAGGCTACAG 57 20445819 20445902 CATTTCCACTGTTGATGGA 57 NA DesignRelaxed Drosophila melanogaster 50 CG6643 FBgn0039208 FBtr0084647,FBtr0084648 3 2 2 91 3R 20378366 20378626 CTATTGGTGTGAGGCTACTG 59 20378680 20378698 GGTTCTCGTCTTTCTTGGA 59 NA Drosophila melanogaster 50 BRWD3 FBgn0011785 FBtr0084604 3 1 1 87 3R 20146558 20146576 TCCTTAAGGGACTACTGCA 59 20146627 20146706 GAACGCGATCTAAGTTGTG 58 NA Drosophila melanogaster 50 CG6364 FBgn0039179 FBtr0084602 1 1 1 82 3R 20116541 20116560 AGATACGAGAACTGTTCCAC 59 20116605 20116680 GATATCACGTGGCACTCTC 59 NA Drosophila melanogaster 50 CG4624 FBgn0039058 FBtr0084401 2 1 1 72 3R 18984327 18984346 AATCTATTGTCCTTCGAGGC 59 18984207 18984295 GTATGATATCACTGCCAATAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7054 FBgn0038972 FBtr0084254 1 1 1 90 3R 18291391 18291470 CCAATACTACTCGCACAGG 59 18291524 18291542 TAATAATTGGCGGCAATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5621 FBgn0038840 FBtr0110956,FBtr0083978 1 2 2 171 3R 16729758 16729776 CAAGCTGGAAGTCATTGAG 58 16729911 16730012 ATAGGGTTCACTAATGGCC 58 NA Drosophila melanogaster 50 H FBgn0001169 FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917 1 4 4 146 3R 16450480 16450500 GCATCATTCAGAAACTCATCG 59 16450608 16450776 AGGGTGGAGAAACTTTGTG 59 NA Drosophila melanogaster 50 Srp72 FBgn0038810 FBtr0083911 1 1 1 60 3R 16416441 16416460 AAGATGTCATTAAGGGCTCC 59 16416483 16416559 GACATGTCGTATTGATCGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5023 FBgn0038774 FBtr0083866 2 1 1 105 3R 15999894 15999912 GAGGACATTCTCAAGGACG 59 15999981 15999999 CCATCAGTTGGAAGTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4424 FBgn0038765 FBtr0083841 1 1 1 86 3R 15852659 15852790 CTAGTTAAGCATGAAAGAACCC 59 15852594 15852612 AAGGACACTGGCATATGTG 59 NA Drosophila melanogaster 50 cry FBgn0025680 FBtr0083736 3 1 1 98 3R 15040615 15040869 AAGGAATTTGTTCACGAGC 58 15040931 15040949 CAAATCAATGATCCGCTCC 58 NA Drosophila melanogaster 50 CG6026 FBgn0038676 FBtr0083715 1 1 1 141 3R 14867679 14867698 CAACCATTAAGTCTACAGCA 57 14867802 14867884 TCAATGGTTGTTTCTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7720 FBgn0038652 FBtr0083678,FBtr0083679 2 2 2 111 3R 14594466 14594484 TCATCTACGGCATGATGAG 58 14587720 14594391 CTCTTGAACCTGAGATCGA 58 NA Drosophila melanogaster 50 Sur-8 FBgn0038504 FBtr0083447,FBtr0083448 2 2 2 148 3R 13224765 13224783 GACCAGGATGTCATCAAGG 59 13224397 13224416 CCGATCTTATTGCTGTACAG 58 NA DesignNoJunction Drosophila melanogaster 50 mRpS11 FBgn0038474 FBtr0089893,FBtr0089894 2 2 3 106 3R 12898895 12898967 GGATCACAAAGGAGTCCTC 59 12899037 12899055 TAATGGTAACCGCTGTAGC 59 NA Drosophila melanogaster 50 CG6118 FBgn0038339 FBtr0113240,FBtr0113239 3 2 2 94 3R 11249455 11249475 CAGGTGAATGTCAAGTATGAG 58 11249255 11249399 CTGTCCAGGTTCTTCTCTG 59 NA Drosophila melanogaster 50 CG31304 FBgn0051304 FBtr0083040 2 1 1 107 3R 10926048 10926066 TATTCATGCTCGGAGATCG 59 10925902 10925977 ACACATTACCTGTCAGCAG 59 NA Drosophila melanogaster 50 Kif19A FBgn0038205 FBtr0082912,FBtr0082911 3 2 2 80 3R 9939301 9939320 CGGCAGCATATGATTATCTC 58 9939178 9939258 TGATTCAATGTCGTCATCG 57 NA Drosophila melanogaster 50 CG31337 FBgn0051337 FBtr0082790 2 1 1 92 3R 9370330 9370348 TATGCGATGTACAAGGAGC 59 9370088 9370274 GCACAAATGATAGCCTTCG 59 NA Drosophila melanogaster 50 CG14394 FBgn0038079 FBtr0113226 2 1 6 245 3R 8521124 8521858 ATGAGATGAAGGCAATGGA 58 8522831 8522850 TTCGATCCTTGGTATTATGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6764 FBgn0037899 FBtr0082403 2 1 1 225 3R 7257046 7257134 CAAGGTCTTCAAGTTCTGC 58 7256839 7256857 CTCCTTAATCTCCGTCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6723 FBgn0037895 FBtr0082405 2 1 1 101 3R 7243952 7243970 ACCTAAACATCACCTCCAC 58 7243697 7243832 GATAGGCCACATTCATAATGG 58 NA Drosophila melanogaster 50 hth FBgn0001235 FBtr0100455,FBtr0082254,FBtr0082255,FBtr0100454,FBtr0082253,FBtr0082256 2 6 6 91 3R 6417178 6419287 GAAGTCGACTCACTGATGG 59 6411625 6411645 CAGAAGTTATCGCATAACTCG 58 NA Drosophila melanogaster 50 Teh1 FBgn0037766 FBtr0082151 2 1 1 129 3R 5690793 5690811 TGATAACGGTCATCTCGTC 58 5654509 5690703 GAAGTATCACTGAGATTCTCGA 59 NA Drosophila melanogaster 50 CG12947 FBgn0037753 FBtr0113213,FBtr0113212 1 2 2 61 3R 5607535 5607553 AAGTTTAGTCCCAAGGACG 59 5607578 5607596 GGTTTCCTAGTGGTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11977 FBgn0037650 FBtr0081961 1 1 1 124 3R 4823478 4823618 ATACTCCACCCGATTACTG 58 4823769 4823787 ATAATCGCTCATCCTGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9636 FBgn0037556 FBtr0081806,FBtr0081805,FBtr0081804 1 3 3 80 3R 4068558 4068647 TAGCCGAGATCAAACACTG 59 4068496 4068514 TCTCTTGACGATGCAAGAG 59 NA Drosophila melanogaster 50 CG11052 FBgn0040524 FBtr0081821 3 1 1 196 3R 3834374 3834506 TTTCGAATGTACACCTTGC 58 3834145 3834165 GAAAGTTCTGTAGTCTCACTG 58 NA Drosophila melanogaster 50 CG12163 FBgn0037303 FBtr0078823 2 1 2 160 3R 1065332 1069568 GAGAAATATGTCCATCGCA 57 1064896 1064915 GAGGCTGAGTATACTTTCAC 57 NA Drosophila melanogaster 50 rpk FBgn0022981 FBtr0078859 3 1 1 140 3R 473035 473130 GATTTAAGGTACTGCTTCATGC 59 473230 473249 GATGGTACTCTGCTATTCCC 59 NA Drosophila melanogaster 50 CG31526 FBgn0051526 FBtr0078929,FBtr0111213 2 2 2 184 3R 359280 359298 ATCTTCCCTTAGCCTTTGG 58 359446 359464 AATAACTACGATCGTGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41466 FBgn0084027 FBtr0111214 1 1 1 80 3R 298576 301804 GCCTAATTATGGACTGGTCC 59 301846 301865 TACACAAACTTCGGCTAGTC 59 NA Drosophila melanogaster 50 CG41468 FBgn0084029 FBtr0111210 2 1 1 105 3R 245351 245369 TGTTTGTTGCATGACAGAG 58 245264 245282 TTCTTATACTGCTTGGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32314 FBgn0047306 FBtr0072820 2 1 1 61 3L 1630827 1630845 TAGCGTGTACAATATGTCG 57 1630784 1630802 GAGATGGACATTGAACGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5932 FBgn0036996 FBtr0078196 3 1 1 60 3L 20453824 20453842 ACTACTGTTCAGCTTGGTG 59 20453866 20453884 GCTCAGACAATAGTCCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13813 FBgn0036956 FBtr0074827 1 1 1 60 3L 20225594 20225674 GAGCCTAATTCTGATCAACCT 59 20225693 20225714 CATAGCGAGACATTTGAAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34254 FBgn0085283 FBtr0112448 3 1 1 63 3L 18673581 18673599 GGAGCAGTAAACAATCCGA 59 18673626 18673697 CAAGGACTAGATGGCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18233 FBgn0036795 FBtr0075103 1 1 1 105 3L 18600086 18600165 TATGCTGGAGAAGTCTCAC 58 18600234 18600252 CATCGAAAGCATTGAACCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG16775 FBgn0036767 FBtr0075156 3 1 1 60 3L 17879301 17879319 CATCTTTATCGGCACTCTG 57 17879259 17879277 AAAGTTGTCGTACTTGACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32186 FBgn0052186 FBtr0075172 1 1 1 80 3L 17788550 17788721 GGAGTCAAGGTTCTCATCTG 59 17788489 17788509 CAGTATTAGTCTCCACAGCTC 59 NA Drosophila melanogaster 50 Lmpt FBgn0036672 FBtr0089452,FBtr0089457,FBtr0089456,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459,FBtr0089455 1 8 8 80 3L 16914082 16914100 GGAGCAGGAGATCTATTGC 59 16914143 16914290 GAGGTGATGACCTTATTGCA 59 NA Drosophila melanogaster 50 CG4982 FBgn0036598 FBtr0075469 2 1 1 61 3L 16294709 16294727 CTACTTGCCCAGCTATGAG 59 16294749 16294770 CATAACTCTCGTATCCTACGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12304 FBgn0036515 FBtr0075565,FBtr0075566 1 2 2 127 3L 15577530 15577748 ATTAAAGGAGGTGCCACTG 59 15577839 15577857 AGTGCGTAAAGGTCTTGAC 59 NA Drosophila melanogaster 50 CG17362 FBgn0036393 FBtr0075764 1 1 1 60 3L 13979674 13979694 GAGATTCGACTGATATGTTGG 58 13979713 13979734 GTGATCTAAACGAAGAAAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14118 FBgn0036323 FBtr0075870 2 1 1 199 3L 12885951 12886434 TTTCATCAAGGTTCTCCCTG 59 12886596 12886614 TCCAAAGACTCTCCATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsf2 FBgn0036299 FBtr0075966 1 1 1 84 3L 12525255 12525276 GAACACTTCCATACTCTATGAG 57 12525129 12525210 ACTAGAATCCTGGAACAGC 58 NA Drosophila melanogaster 50 CG32092 FBgn0052092 FBtr0076082 3 1 1 80 3L 11795856 11795875 TACAGCATAACGCTATACGT 58 11795734 11795815 CGACTGTACATCTATTACCCT 58 NA Drosophila melanogaster 50 CG7339 FBgn0036188 FBtr0076107 3 1 1 148 3L 11642455 11642473 TATCACGGGAGATCTTCGA 59 11642582 11642662 GTTAATGGCACCAATAATCCTG 59 NA Drosophila melanogaster 50 CG6175 FBgn0036152 FBtr0076183 3 1 1 68 3L 11282737 11284138 TATCGAACACGAATCGGAG 59 11282687 11282706 TAGTAATTTATGGGCGACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34001 FBgn0054001 FBtr0100056 2 1 1 70 3L 10627293 10627382 CAACCTATTCTCATCATTGGAC 58 10627413 10627431 ACCGCAAATGGTTTATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32064 FBgn0052064 FBtr0076288 2 1 1 60 3L 10484826 10484844 GACTATGAAGGTTGGACCC 59 10484868 10484886 TCCTGCGAGCTAAATTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3222 FBgn0036014 FBtr0076379 3 1 1 60 3L 9592584 9592603 CAACCCAGAAATATTCCCGA 59 9592623 9592644 TCTTACTATTGAACAGACCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsp26 FBgn0001225 FBtr0076496 2 1 1 183 3L 9370432 9370450 GCAGTGAACAACTCAAAGC 59 9370267 9370286 AAAGCAGAGTAGATAGCGAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Tequila FBgn0023479 FBtr0076526,FBtr0076527 3 2 4 94 3L 9069886 9069969 GAACTTTCCACTGAGTTTATGG 59 9070024 9070042 TACTTGGTGCAATCGAAGG 59 NA Drosophila melanogaster 50 CG13306 FBgn0040828 FBtr0076592 3 1 1 66 3L 8742521 8742539 AATGGTTACATGGGTTTCG 57 8742473 8742491 ATTGGAAGTGATACGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7457 FBgn0035812 FBtr0076814 1 1 1 81 3L 7718885 7718959 ATCAAAGACCTTTCAGGTCAG 59 7718824 7718842 TAACTACGCCGATGTTCAG 59 NA Drosophila melanogaster 50 Or65a FBgn0041625 FBtr0077004 1 1 1 138 3L 6314663 6314734 CTACTTACAGATCGCTGCA 59 6314836 6314854 TCATATACTCGACTGCGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Lcp65Ac FBgn0020642 FBtr0076991 3 1 1 208 3L 6137934 6137952 AAGTAACGTTGACTAGCCG 59 6138124 6138212 CAAAGCAAAGTTGTAGCCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Sras FBgn0029121 FBtr0077083 2 1 1 91 3L 5557283 5557302 TTATACCATACAGCCTGACG 58 5557356 5557433 GTCCAGATCGAAGTAGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32237 FBgn0052237 FBtr0073356 3 1 1 138 3L 4852138 4852157 GATGGATACCGCTACAAGAC 59 4852019 4852037 CTTCCTCAACTGGAACCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32242 FBgn0052242 FBtr0073326 3 1 1 76 3L 4503563 4503581 ATAGTGAACACTGGTCAGC 59 4503438 4503457 AAGTAGGAACAACTCTCGAC 59 NA DesignNoJunction Drosophila melanogaster 50 dib FBgn0000449 FBtr0073205 1 1 1 77 3L 4063581 4063600 AGGATTCTTAATCAGGATGC 57 4063699 4063717 TACCATGTTCTGGGTAACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10359 FBgn0035452 FBtr0114608,FBtr0073136 3 2 2 110 3L 3613108 3613127 GACTACAAGGAGCTGATGAC 59 3613197 3613761 CAGCTGATCCAATTTCTTATCG 59 NA Drosophila melanogaster 50 CG12012 FBgn0035444 FBtr0073076 1 1 1 204 3L 3376924 3376942 AAGTCATGAACAGTCCCTC 58 3377161 3377179 TATCCAATCCGACATGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1271 FBgn0035392 FBtr0072986,FBtr0072988,FBtr0072987 3 3 4 226 3L 3054470 3054549 CATATGATTAGGGTTGATGGC 58 3054737 3054755 GTTTCGTACTCCTTGGGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG32301 FBgn0052301 FBtr0072875 1 1 1 82 3L 2245337 2245358 GATTCCAAGAGTACAACATGAG 58 2245400 2245470 CATAGCCATTTGAAACACCA 58 NA Drosophila melanogaster 50 CG13890 FBgn0035169 FBtr0072587 1 1 1 102 3L 851800 851818 CAGAAAGATTGTGCTTGCC 59 851884 851961 GAAGTAGGTCGTTTCGGAG 59 NA Drosophila melanogaster 50 PHDP FBgn0025334 FBtr0072224 2 1 1 78 2R 19771309 19771329 GATATCTACACCAGGGAAGAG 58 19770983 19771001 TTCTGTTCTGGAACCAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG30414 FBgn0050414 FBtr0072032 3 1 1 194 2R 19272389 19272410 CCAAGTCATATAAACTCAGGAG 57 19272161 19272234 GGACGTAGTCTGAGTACTG 58 NA Drosophila melanogaster 50 CG9897 FBgn0034807 FBtr0071989 2 1 1 94 2R 18873371 18873446 GATAATTCTCGAGCCAATAGG 58 18873297 18873315 CTAAGGATCCGCACTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11362 FBgn0034737 FBtr0071836 1 1 1 176 2R 18449932 18450010 TTCTTGGGAATCACACTCG 59 18450148 18450168 CCTGTCCACATTTGTAATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mei-S332 FBgn0002715 FBtr0071761 1 1 1 151 2R 18010963 18011042 ATAGAAGAGCCAACAAGCC 59 18011155 18011175 GCTAAACAGACGATTGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 GlcT-1 FBgn0067102 FBtr0071755 1 1 1 60 2R 17964225 17964246 CCAAGATCAATAACATCCATCC 58 17964267 17964285 GAGATCATCACAAAGTCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fem-1 FBgn0034542 FBtr0086245,FBtr0086246 1 2 2 82 2R 16551360 16551447 GCAATAATGTATCGGTAGATCG 58 16551299 16551317 AAGATTGTGGTTCTCCACC 59 NA Drosophila melanogaster 50 CG13436 FBgn0034532 FBtr0086229 1 1 1 64 2R 16524965 16524986 CAAGATTGATGATACCCTATCC 57 16525010 16525088 CAAAGTGCGGAAATATAAGC 57 NA DesignRelaxed Drosophila melanogaster 50 RpS18 FBgn0010411 FBtr0086273,FBtr0086274 3 2 2 240 2R 16151784 16151803 CCTGCGTATCATGAATACGA 59 16152066 16152084 ATCGATGATGTCCTTCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Scs-fp FBgn0017539 FBtr0086552,FBtr0086553,FBtr0086554 1 3 3 93 2R 15280210 15280228 GATGACTATTGTGAGCGCT 59 15280075 15280155 GCTGAAATCGTATTCATCCTC 58 NA Drosophila melanogaster 50 CG18607 FBgn0034429 FBtr0086514 3 1 1 61 2R 15177146 15177166 CTTCTGCACTAGCTTCTACTC 59 15177189 15177207 AATAGATGCACTCCATGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jheh1 FBgn0010053 FBtr0086625 1 1 1 267 2R 14742285 14742359 ATCCGGATAAGACCATTGC 59 14741982 14742001 TTCTTACCCACTTTGTTGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG5036 FBgn0028743 FBtr0089552 2 1 1 93 2R 13685114 13685203 TATCCGAGATTCCTAAACTCTC 58 13685257 13685275 TCTAAGTTGGACTATCCGC 58 NA Drosophila melanogaster 50 qkr54B FBgn0022987 FBtr0086925,FBtr0086923,FBtr0086924 1 3 3 85 2R 13358315 13358334 GTACATACGCGATTGTATGG 58 13358382 13358455 TTTCTATCTCGCCTTCCAG 58 NA Drosophila melanogaster 50 RhoGEF2 FBgn0023172 FBtr0086970,FBtr0086971,FBtr0086969 3 3 3 81 2R 12929165 12929184 GATCAAGAAGAATCCTAGCG 57 12929228 12929313 TTTATCATCCTGCTTGGTC 57 NA Drosophila melanogaster 50 Amyrel FBgn0020506 FBtr0087117 2 1 1 91 2R 12539606 12539624 GGATCACCTCATCGAACTG 59 12539477 12539551 GGCTGCTGTAGATGTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4439 FBgn0034132 FBtr0087087 1 1 1 60 2R 12379672 12379690 CAGAATCTCAACTCCTTCC 57 12379714 12379732 CTAGGATAATGGGTGGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30469 FBgn0050469 FBtr0087328 3 1 1 60 2R 11389572 11389591 GCAGCCTTACTCTGATACTC 59 11389610 11389632 GTACTATTAGGTCCTCCATTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12853 FBgn0040747 FBtr0087406 3 1 1 75 2R 10821195 10821213 ACAAGGGTGCTAAGAAAGG 59 10821252 10821270 TTCGATTCGGAAGTCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dro FBgn0010388 FBtr0087436 2 1 1 233 2R 10633492 10633510 ACAATGAAGTTCACCATCG 58 10633707 10633725 TTGATCGGATGACTTCTCC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG8531 FBgn0033918 FBtr0087538 1 1 1 80 2R 10145863 10145943 GATTCATCAAAGAGCGACC 58 10145987 10146005 ATAGGTGTACTCTATCCGC 57 NA Drosophila melanogaster 50 CG8394 FBgn0033911 FBtr0087577 1 1 1 238 2R 10087788 10087878 TTTAGGCAAGGTAGCATCG 59 10087568 10087586 TATAGACACTGCACCAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cp1 FBgn0013770 FBtr0087592,FBtr0087591,FBtr0087593 2 3 3 167 2R 9849824 9854260 GAATGGCATACGTTCAAGC 59 9854391 9854409 ATCGGCGTACTTATTGACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12374 FBgn0033774 FBtr0087854 2 1 1 110 2R 8650820 8650838 AACTACGAGCAGATGAAGC 59 8650910 8650989 CGAAACGACATAGTTAAGCAG 59 NA Drosophila melanogaster 50 CG13197 FBgn0062449 FBtr0088078 2 1 1 81 2R 7579072 7579482 CTGAATCAGCATGTCAACG 59 7579527 7579545 CCATATCGGGTACGATCTG 59 NA Drosophila melanogaster 50 RpS15Ab FBgn0033555 FBtr0088226 3 1 1 120 2R 6709608 6709626 TCAGTTTGGTTACGTTGTG 58 6709710 6709728 GATGTGAACTTGGTGTCTC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12935 FBgn0033547 FBtr0088221 3 1 1 61 2R 6697643 6697664 ATCTGGGCGATAATAAGTACAG 59 6697685 6697763 GCCATATCCTATCAGAAAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34222 FBgn0085251 FBtr0112415 1 1 1 141 2R 6207801 6207819 TAGACAGAAATGCCGATCC 59 6207678 6207696 GAAATAGCCGTTATTGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18446 FBgn0033458 FBtr0088376 1 1 1 180 2R 5760509 5760527 AAGGAGATATGGAGCACAC 58 5760671 5760751 GATCCGGATTGAAGTAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2065 FBgn0033204 FBtr0088922 3 1 1 60 2R 3551754 3551772 AGAACTGGACTTGAGTTCG 59 3551796 3551870 CTCTTTCTTGAATCCAGCA 57 NA DesignRelaxed Drosophila melanogaster 50 CG41447 FBgn0084011 FBtr0111278 1 1 1 106 2R 919155 919746 GACAACCAGAGCTTACTCC 59 919067 919085 ATTCCTCATAAGGGTTCGG 58 NA Drosophila melanogaster 50 Stlk FBgn0046692 FBtr0111112 3 1 2 94 2R 434474 447872 TTTGTACAAGCAGGTTTCC 58 447930 447948 ATGAACATAATGCTCGGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me28S-A2958 FBgn0086037 FBtr0114313 2 1 1 60 2L 16417854 16417873 GAATGTCAGTGGATGATTGC 59 16417813 16417831 AGTTGGTAATCGACAACCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31601 FBgn0051601 FBtr0085947 2 1 1 74 2L 22041648 22042108 AGCTAAGGATACCTACCCA 58 22041592 22041611 CCGAACGATATTTCTAGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31612 FBgn0051612 FBtr0085908 2 1 1 86 2L 21765987 21766005 TTAACTGCAGCTATGTGGG 59 21762856 21762874 ACTCCTCACCATTCTTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Gr39b FBgn0041245 FBtr0081522 1 1 1 67 2L 21368048 21368066 ATGCTGAGGGCTTTATGAG 59 21367941 21367959 ATAGGTAACTTTCGCAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 Hr38 FBgn0014859 FBtr0081397,FBtr0081398 1 2 2 207 2L 20687063 20687264 TAACCCTGATCACAGAACG 58 20686874 20686892 AGCTTCAGGTAGAAGATCC 58 NA DesignRelaxed Drosophila melanogaster 50 CG2614 FBgn0032873 FBtr0081388 2 1 1 80 2L 20657195 20657272 ACTAAGAACCATGAGGAACG 59 20657313 20657333 AAGTCCAGTAGGAAATTGAGG 59 NA Drosophila melanogaster 50 CG40169 FBgn0058169 FBtr0100178,FBtr0100179 3 2 2 165 2L 20237481 20237499 ATGTCTATTTGTGCCACCA 59 20238400 20238418 CATCATTTCGCATGGACAC 59 NA DesignNoJunction Drosophila melanogaster 50 spi FBgn0005672 FBtr0081271,FBtr0081269,FBtr0081268,FBtr0081270,FBtr0100597,FBtr0081272,FBtr0081267 3 7 7 65 2L 19568669 19568687 ATCTACCGGTTTACAGCTG 59 19568622 19568640 TCTCCTTGTATTCGCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10189 FBgn0032793 FBtr0081284 2 1 1 60 2L 19491867 19491885 GTTCACTGTCGATCTACAC 57 19491825 19491843 AGTACTCAATAGCCAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6412 FBgn0032646 FBtr0080994 2 1 1 289 2L 17499929 17500052 GATGGAGATCTGTGGAAGC 59 17499658 17499676 TGAAACTCAAAGTCCAGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG31735 FBgn0051735 FBtr0080791 1 1 2 174 2L 15895803 15895878 ATTAACCTGGACCACTGTG 59 15896016 15896034 TTCATACAGGATATGCCGC 59 NA Drosophila melanogaster 50 wek FBgn0001990 FBtr0080764 1 1 1 60 2L 15766664 15766748 AAGAACTGAGAGCGATAACTC 59 15766624 15766642 ACCAACATGGTCTAATCCT 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG11865 FBgn0028947 FBtr0080753 2 1 1 60 2L 15617613 15617634 CCAATGGAGTGACAAATTATGG 59 15617654 15617673 GGACCATAGTGCATAATGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rk FBgn0003255 FBtr0080611,FBtr0080613,FBtr0080614,FBtr0080612,FBtr0080610 2 5 5 81 2L 13985573 13985647 GCCGCAAATGCATAATCTC 59 13985510 13985531 CTCTTCGTTGAAGTTAATAGCC 59 NA Drosophila melanogaster 50 CG16800 FBgn0032462 FBtr0080417 1 1 1 255 2L 12966898 12967107 GGAGCAGGAAGAAGATCAG 59 12967326 12967344 CTTGTGATGAGACTCCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ACXE FBgn0040506 FBtr0080416 1 1 1 87 2L 12928710 12928791 TCATATCGTGGATGTGTATCTC 59 12928839 12928857 CATGGCAAACATGACAGAC 59 NA Drosophila melanogaster 50 CG5325 FBgn0032407 FBtr0080326 3 1 2 150 2L 12094570 12094589 TGTTCCTACCATTCATGGAG 59 12094701 12094777 TTCTGGTACCTTTCCTTGTC 59 NA Drosophila melanogaster 50 CG31705 FBgn0028490 FBtr0080244,FBtr0080243,FBtr0080242 1 3 3 74 2L 11524599 11524617 TGTTTACTATCCACAGGCG 59 11524475 11524493 AATGCTCCAGCGATAAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 TfIIB FBgn0004915 FBtr0080025 2 1 1 95 2L 10431810 10431829 TAAGGAGATATCCTCGATGG 57 10431886 10431960 TTCTTTCCATCATGAACCTG 57 NA Drosophila melanogaster 50 CG5385 FBgn0032215 FBtr0080062 3 1 1 60 2L 10311922 10311941 TTGAATAGCAGATCGACGTC 59 10311767 10311900 TATTTGAGGGTTCACCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13087 FBgn0032045 FBtr0079675 2 1 1 67 2L 8476836 8476854 AACCTCAACTCCCATTGTG 59 8476885 8476903 CCTTTAAGTCCGATTGCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL36A FBgn0031980 FBtr0079546 2 1 1 152 2L 8042125 8042457 CCCATCTTCAGGAAGAAGG 59 8041991 8042009 GAACTGGATCATCTGTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 Gmd FBgn0031661 FBtr0079049 2 1 1 105 2L 4976264 4976282 ATGGTAAAGTGGTGGAGAC 58 4976117 4976135 CGGTAGTTGATGACGATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15631 FBgn0031626 FBtr0077419 1 1 1 88 2L 4734243 4734314 CAGATCCGGAATACAATAGAG 57 4734175 4734196 CCTGGATTGAAATCTTCTATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 betaggt-II FBgn0028970 FBtr0077631 1 1 1 105 2L 2879280 2879298 TCGTAAAGCCCTCAAATGG 59 2879367 2879385 TGGTTCTCGATGTACTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2862 FBgn0031459 FBtr0077718,FBtr0077719 2 2 2 66 2L 2770392 2770469 GATGATAAATGCGTTGCCT 58 2770499 2770517 GAGGAATCACGAGGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15398 FBgn0031446 FBtr0077741 2 1 1 119 2L 2695978 2696054 AAACCCTTCTACTGCTTGG 59 2695877 2695896 ATAGCGATAGACGAACAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34172 FBgn0085201 FBtr0112363 2 1 1 124 2L 2192831 2192976 AGCAGTTACATAAGAGACCT 57 2192664 2192682 AAATCTTATCCGCAGGTCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Or22b FBgn0026397 FBtr0077874 1 1 1 80 2L 1523520 1523680 TGATATTGGACTATGTCGACG 59 1523720 1523740 GTACAATACCGATCAAGAGGA 59 NA Drosophila melanogaster 50 CR41101 FBgn0085782 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR31518 FBgn0051518 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-A771 FBgn0086067 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 inx5 FBgn0030989 FBtr0074698 3 1 1 60 X 19064089 19064107 GTATCTGCGCTACTACCAG 59 19064047 19064065 GTAGAAGACGAACGACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15046 FBgn0030927 FBtr0074628 2 1 1 204 X 18382307 18382327 GACTATCTGGCGGATATAGTG 59 18382010 18382085 GACAGTCAGTGTCTTCACC 59 NA DesignRelaxed Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074573,FBtr0074575,FBtr0074574 2 3 6 163 X 18301908 18302558 CCTACCAATGCGAGATGAG 59 18286877 18286896 GGTGTAGTCCATATCGAAGC 59 NA Drosophila melanogaster 50 Frq1 FBgn0030897 FBtr0074545,FBtr0100239 1 2 2 80 X 18055282 18055301 GTTGAAACAGGATACCATCG 58 18061683 18061829 AATCCTTTGTGCCATTGAC 58 NA Drosophila melanogaster 50 CG8509 FBgn0030696 FBtr0074098 2 1 1 60 X 15704241 15704260 TGATAAGCACCTATGGACTG 58 15704283 15704301 TAGTAGTCTTCGATGGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS15Aa FBgn0010198 FBtr0073792,FBtr0073795,FBtr0073793,FBtr0073794 3 4 4 120 X 13230102 13230120 TCAGTTTGGTTACGTTGTG 58 13230000 13230018 GATGCGAACTTGGTTTCTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 comt FBgn0000346 FBtr0073754 3 1 1 115 X 13153746 13153837 GAAGAAGACTGTCTCCCAG 58 13153914 13153934 CCTTGAAATTGAAGACCAGTG 59 NA Drosophila melanogaster 50 CG17754 FBgn0030114 FBtr0071314,FBtr0071316,FBtr0071315 2 3 3 215 X 9148058 9148150 GATACCTGGACTCTGATCTG 58 9148328 9148346 TATGACATTCGGAATCGCC 59 NA DesignRelaxed Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071271,FBtr0071270 3 2 10 102 X 8770413 8770432 GCGTGTAAAGAAGTATGTGG 58 8770084 8770349 TGATCCAGTCATATCATCGG 58 NA Drosophila melanogaster 50 CG2059 FBgn0029942 FBtr0071047 1 1 1 97 X 7181865 7181947 ATCACCTTACATGAGACGC 59 7182007 7182026 CAAAGTGCACTAAATGTCCG 59 NA Drosophila melanogaster 50 CG10260 FBgn0040335 FBtr0070443 3 1 1 126 X 2526306 2526386 AATAATCCGAACTCCCAGG 58 2526476 2526494 TGAAGATGGTGATCACCTG 58 NA Drosophila melanogaster 50 eIF4E-7 FBgn0040368 FBtr0070252 2 1 1 60 X 1053973 1053993 CTCAATCCACTGAAGATACTC 57 1053933 1053952 TTGTTTGGATCATTCATCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAP1A FBgn0025836 FBtr0112920,FBtr0112919 2 2 2 81 X 31080 31099 CCATATTACGCACCATTTCG 59 31143 32455 GCCGAAACTAAGTTCTTGC 59 NA Drosophila melanogaster 50 CG2246 FBgn0039790 FBtr0085677,FBtr0085676,FBtr0085674,FBtr0085678,FBtr0085675,FBtr0085673 3 6 6 82 3R 26421160 26421180 GGAGACTATTGTGGAGATCAG 59 26421037 26421117 TATTGTTGGCATCCTTTGTG 58 NA Drosophila melanogaster 50 Nup358 FBgn0039302 FBtr0084813 3 1 1 88 3R 21078944 21079019 TCCGAATATGTTTGGTCCTC 59 21079070 21079088 CAATGTAAGGTGCTACCGA 59 NA Drosophila melanogaster 50 CG13616 FBgn0039200 FBtr0084618 1 1 1 147 3R 20219060 20219078 TTTACGATGAGGTGCAGTC 59 20219250 20219268 CTAAAGACAGTCCTGACCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG18428 FBgn0039149 FBtr0084543 3 1 1 69 3R 19935288 19935306 GGATGACTTTGCCATACCA 59 19935405 19935424 GTATTCCTCTGGAGTTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33111 FBgn0053111 FBtr0084529,FBtr0084530,FBtr0100312 1 3 3 120 3R 19633221 19633304 AATTCACAATCTCACCAGC 58 19633119 19633137 GATCTTGAAGAGCTTTCGC 58 NA Drosophila melanogaster 50 CG10157 FBgn0039099 FBtr0084435 2 1 1 84 3R 19505326 19505344 ACATTCTGAGGAAGTACGG 58 19505389 19505468 GCGTTATAAACGTTATCCAGAG 59 NA Drosophila melanogaster 50 CG6623 FBgn0038303 FBtr0083138 3 1 1 149 3R 11042253 11042271 AAACTTTCACCAAGTGTCC 58 11042063 11042142 GGACATGCTAATACATAGCTG 58 NA Drosophila melanogaster 50 Octbeta3R FBgn0053959 FBtr0099998 1 1 5 147 3R 8344783 8344895 ATCTTTAAGGAGGCGATTCG 59 8338729 8338866 GCGATGTGATGACATACCA 59 NA Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 2 15 15 121 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811941 7812031 TTCTTCAGGATGTTGGAGG 58 NA Drosophila melanogaster 50 Csk FBgn0086903 FBtr0082447,FBtr0082446,FBtr0082444,FBtr0082448,FBtr0082445 2 5 5 84 3R 7460837 7460855 CAAATCAGACATGTGGAGC 58 7460710 7460789 GGCTAATGGAATTCTGGGA 59 NA Drosophila melanogaster 50 CG14688 FBgn0037819 FBtr0113215 3 1 1 92 3R 6504122 6504140 AACTGATGGTCTACGATCG 58 6503773 6503791 CGTGGATTAGAATGCAGGT 59 NA DesignNoJunction Drosophila melanogaster 50 Syn FBgn0004575 FBtr0089476,FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471 3 5 5 80 3R 6041343 6042795 TGGATGAGATATCCGAGCT 59 6042837 6042857 TATACTCTCGTCCATCTTTGG 58 NA Drosophila melanogaster 50 Teh1 FBgn0037766 FBtr0082151 3 1 1 130 3R 5690792 5690810 GATAACGGTCATCTCGTCC 59 5654507 5690701 TCGAAGTATCACTGAGATTCTC 59 NA Drosophila melanogaster 50 CG9363 FBgn0037697 FBtr0082043,FBtr0082041,FBtr0082042 1 3 3 60 3R 5283931 5283949 TACCTCAGGTGTTCAATGC 59 5283812 5283831 AGAATTATGGGATACGGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34113 FBgn0083949 FBtr0110806,FBtr0110807 1 2 2 81 3R 1712723 1712808 GATGTTACTCAAACCCACG 58 1712660 1712678 ACAGGTGAGATTGTACTGC 59 NA Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0110933,FBtr0078809,FBtr0078810,FBtr0100199 3 5 15 83 3R 1139715 1139734 TCCAGCAAATCCGATAAGAG 59 1139211 1139672 GGTGGAGTTCTTACTACTATCC 59 NA Drosophila melanogaster 50 tacc FBgn0026620 FBtr0089955,FBtr0089951,FBtr0089953,FBtr0089949,FBtr0089952,FBtr0089954,FBtr0089950 1 7 7 134 3R 561270 561372 TCTGCATGTGAAATACGAG 57 561154 561172 TTCTTCATCTTGTCGTAGC 57 NA Drosophila melanogaster 50 CG41451 FBgn0084014 FBtr0111176 1 1 1 65 3L 22958320 22958338 GTGGACACAGTGTAAATGC 59 22958366 22958385 GCTTATCCATTGTATTTGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6838 FBgn0037182 FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186 1 4 4 88 3L 22709292 22709405 TCAGTAAGGATCCAAACCC 58 22709222 22709240 ATTAAGCAGATTCACGCTG 58 NA Drosophila melanogaster 50 CG15374 FBgn0037152 FBtr0078483 1 1 1 60 3L 22158541 22158559 CACTAACGATGTAACCGCT 59 22158583 22158601 AGGATTTCTGGATACGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5059 FBgn0037007 FBtr0078218,FBtr0078216,FBtr0078217,FBtr0078219 3 4 4 116 3L 20508982 20509000 TGATGAGCTCAGAAACGTG 59 20508709 20508828 TCAATGTTCCAGCTACTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG5262 FBgn0036988 FBtr0078230 2 1 1 103 3L 20422687 20422707 GTAATGTTCTATCTCTGCCTG 57 20422478 20422623 TTTGTTTGGTCACATACGAC 58 NA Drosophila melanogaster 50 PGRP-SB1 FBgn0043578 FBtr0075348 3 1 1 60 3L 16720881 16720899 ATCGCCTTCTAGGATTTCC 58 16720839 16720857 AGGATTGTCCGAATGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15715 FBgn0036538 FBtr0075536 1 1 1 62 3L 15829895 15829913 AAAGGCACTTGTCTATGTG 57 15829320 15829338 TTATACGTCTTGGGATCGG 58 NA DesignNoJunction Drosophila melanogaster 50 l(3)S147910 FBgn0086699 FBtr0075960 1 1 1 60 3L 12518076 12518094 AGTTCTTCATAGACAGCGG 59 12518117 12518136 GTTAGGTAGTCTACGAAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6282 FBgn0035914 FBtr0076636,FBtr0076637 1 2 2 98 3L 8607898 8607974 TCTGCAATGATGGACTGTG 59 8608034 8608054 TGATCACATTGAGGGATATGG 59 NA Drosophila melanogaster 50 smid FBgn0016983 FBtr0076851,FBtr0076850 3 2 2 81 3L 7378360 7378440 TCAGTTAACGAACAGGACC 59 7378483 7378503 TATCATTTAGAGTGGGTACCC 58 NA Drosophila melanogaster 50 CG32264 FBgn0052264 FBtr0073186,FBtr0073187 1 2 5 90 3L 3718983 3721547 ATTAGACTATGCAGGCAGC 59 3718911 3718929 TTTCGCGTATCACAAATGG 58 NA Drosophila melanogaster 50 CG17723 FBgn0035432 FBtr0073057,FBtr0073055,FBtr0073058,FBtr0073054,FBtr0073056 1 5 5 85 3L 3312395 3312526 CATATTAGGTGCCGTAACCT 59 3312574 3312592 GTAGAGTGGATACCCTCGT 59 NA Drosophila melanogaster 50 CG34209 FBgn0085238 FBtr0112402 2 1 1 147 2R 18926495 18926513 AGTTGATCTGAGCTTACGT 58 18924319 18924337 TGGGATTGTACGATGTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Gr58b FBgn0041238 FBtr0071732 2 1 1 60 2R 17866830 17866850 CAGCTCTATAAATACTCGCTG 58 17866790 17866808 CTATGGCCCTCGTTATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15071 FBgn0034377 FBtr0086605 3 1 1 60 2R 14584406 14584424 GAAACTGGTCGAAATCCAC 58 14584445 14584466 TGATCAGACCTATTAGATCTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab4 FBgn0016701 FBtr0086830,FBtr0086831,FBtr0086829 1 3 3 82 2R 13461765 13461847 AGAGAACGAGCTTATCTTCC 58 13461892 13461910 TGGTCTTTGAGCACTTGAG 59 NA Drosophila melanogaster 50 CG3687 FBgn0034097 FBtr0087132 2 1 1 74 2R 12124365 12124383 GTGACGAAGGATCGATCAG 59 12124420 12124439 GCAAATTGATGTGGTAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dg FBgn0034072 FBtr0087258,FBtr0087257,FBtr0087256 3 3 3 132 2R 11972593 11972678 TTTATGGCCTACCTCTGGA 59 11972479 11972497 TTAATGGTCCTAACCGCTC 59 NA Drosophila melanogaster 50 CG6347 FBgn0033874 FBtr0087637 1 1 1 71 2R 9725503 9725521 AGAAAGGAGATAGCCACCT 59 9725994 9726015 GATATGGCCATTCGTATATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4663 FBgn0033812 FBtr0087761 3 1 1 300 2R 9116539 9116557 CTTGATCATGAAGCTGCTG 58 9116121 9116139 TTGATCCTGCATCTCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4646 FBgn0033810 FBtr0087764 3 1 1 94 2R 9107490 9107508 TCATGAAGTGCAAGATGTG 58 9107355 9107373 CTTAAATGCGCCAGAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835 3 6 8 110 2R 8504608 8504626 CCTGCATATTTACCCACTG 57 8504697 8505312 GACGTCTACCATTCTAAATCTG 58 NA Drosophila melanogaster 50 CG8170 FBgn0033365 FBtr0088665 3 1 2 88 2R 4909291 4909309 CTACAGTCTGCAGGATCTG 59 4908980 4909240 TTGTGATGTCGACTTTCTCC 59 NA Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 2 9 9 94 2R 4568146 4568164 AGATCAAGACCTGCTTGTG 59 4568222 4568303 GGTCATATCACGGTAGTCC 58 NA Drosophila melanogaster 50 CG17082 FBgn0039994 FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289 2 6 6 90 2R 644086 644172 TCTATTGGTCGATCAAAGGAG 59 644224 644242 CATTCTCTGAGGCTGACAG 59 NA Drosophila melanogaster 50 smi35A FBgn0016930 FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289 2 5 5 90 2L 14195795 14195814 CGGATGGATCTCATAATGTC 57 14189225 14195742 AGGTTCAAGCTCATTAGCT 58 NA Drosophila melanogaster 50 CG6043 FBgn0032497 FBtr0113039 3 1 5 80 2L 13274313 13274336 CGTATCATACCGATAACTCTAGAG 59 13274374 13274707 TGGGTAATTCTGGTAACCAC 59 NA Drosophila melanogaster 50 CG5355 FBgn0032242 FBtr0080047 2 1 1 101 2L 10411501 10411519 AAACGTGATAGTGTTGAGC 58 10411351 10411436 GATGAACATAAGCCCAGAG 57 NA Drosophila melanogaster 50 CG31715 FBgn0051715 FBtr0079996 2 1 1 181 2L 10341918 10342156 GGAGCAGACATAAATAGAAAGG 58 10342351 10342371 GCAAGGAGTTTCTTAATCTCG 59 NA Drosophila melanogaster 50 CG12560 FBgn0031974 FBtr0079548 1 1 1 95 2L 8008748 8008766 ATTTGGGTGCTTATGACGA 59 8008606 8008624 TATGTGACTCCAGAACCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG31637 FBgn0051637 FBtr0079287 2 1 1 80 2L 6525757 6525777 TTCCACATATCGAGATTCCAG 59 6525818 6525899 TCCTGGATTTGCTTGATCTC 59 NA Drosophila melanogaster 50 CG9098 FBgn0031762 FBtr0079229,FBtr0079228 2 2 2 150 2L 6009356 6009376 GGTGTGATAATCAAGAATCCC 58 6009171 6009189 CAAAGTCAAACTTGCTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 Gs1l FBgn0019982 FBtr0110812 3 1 2 161 2L 4456511 4456734 GCAGATTACGTTTAGGAAACG 59 4456060 4456388 TATATCCTCTCCGTGTCCA 58 NA InUTR Drosophila melanogaster 50 l(1)G0003 FBgn0027335 FBtr0074616 3 1 1 106 X 18531741 18531760 ATAATTGGTCACGAGAAGTC 57 18531593 18531672 ATTAGCATTAGTTCCTCGC 57 NA Drosophila melanogaster 50 CG5010 FBgn0030821 FBtr0074387 1 1 1 126 X 17044230 17044248 CAAACAGTTCATCCAGTGC 59 17044338 17044356 GATATTCTACCGGAGCTGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 lic FBgn0015763 FBtr0073720 2 1 1 102 X 12985990 12986008 GGTCTTCCTTCACGATCTG 59 12986160 12986178 AATGACTTTCAGTTGAGCG 58 NA DesignNoJunction Drosophila melanogaster 50 cac FBgn0005563 FBtr0073589,FBtr0100305,FBtr0073587,FBtr0073586,FBtr0100303,FBtr0100302,FBtr0073584,FBtr0100304,FBtr0073588,FBtr0073585 1 10 10 80 X 11848176 11848195 ACTTCCCTATGTCTGTTTGC 59 11846240 11848134 TTGATATTCCCGAACACCTG 59 NA Drosophila melanogaster 50 PPP4R2r FBgn0030208 FBtr0071453,FBtr0071451 1 2 3 105 X 10373658 10373676 CCATCTTCAAGTGGTCCAG 59 10373745 10373881 TAGTTGGGAATCTCCTCCA 59 NA Drosophila melanogaster 50 Ctr1A FBgn0062413 FBtr0070951 1 1 1 105 X 6559634 6559652 GAATATCGACCTGTGACGG 59 6560884 6560902 TAATCGACAGCATCGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 br FBgn0000210 FBtr0070263,FBtr0070266,FBtr0070267,FBtr0070262,FBtr0070265,FBtr0070264,FBtr0070261 2 7 7 93 X 1529978 1529996 GCAGTCCTTCCTTAAGACC 59 1530053 1530146 CTGTATCTGAGCCAGATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3176 FBgn0029524 FBtr0070078 1 1 1 78 X 376452 376554 CTGCGTGACTTTATTTGGT 58 376596 376614 CTAGCTGAGGAACATCTGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG41279 FBgn0085595 FBtr0114039 2 1 1 60 U 2221218 2221237 ATTGAAGCGACAATATGCAG 58 2219704 2221196 TTCTTCTTGGTGTATCGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Gr97a FBgn0041224 FBtr0085081 1 1 1 63 3R 22791201 22791219 GTATTTCTGGCTGTTCCCT 59 22791099 22791176 TGAGGGTTTGGTTACTTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10254 FBgn0027512 FBtr0084476,FBtr0084477 2 2 2 117 3R 19516918 19516936 GGTAATAGAAGATCCGCCG 59 19516756 19516840 GCCAGAATCATTCTTAGTACGA 59 NA Drosophila melanogaster 50 CG15499 FBgn0038891 FBtr0084124 3 1 1 179 3R 17357664 17357761 GATGAAGGTGTGGAAACGA 59 17357356 17357377 GCCAGACAATTATGGATTAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG31179 FBgn0051179 FBtr0084110 2 1 1 68 3R 17325473 17325494 GCTGGTATTATGGTAGGTTAGG 59 17325523 17325541 ACTTCCTTCCTATTTCGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS33 FBgn0038426 FBtr0083316 2 1 1 67 3R 12262127 12262146 GAACTACCTCTCAAATCGCA 59 12262017 12262097 CCACCTTCATGGACTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ksr FBgn0015402 FBtr0078766 3 1 1 60 3R 1306909 1306927 CAAGGTGATTATCACGGAC 57 1306867 1306885 CATATCACAGTAGAGCAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7338 FBgn0037073 FBtr0078342 2 1 1 92 3L 21330395 21330414 CAATTGATAATCCAGTGCGG 59 21330469 21330543 GTAGCGTTCGAACTTATGC 58 NA Drosophila melanogaster 50 CG14060 FBgn0036683 FBtr0113178 2 1 1 74 3L 16976954 16978348 GTTCATTGTTGTAAGGGAAAGG 59 16978383 16978401 TTGTCTCTGATCCGTTTCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG10732 FBgn0036365 FBtr0075851,FBtr0075852 2 2 2 144 3L 13437171 13437316 TAGGAAAGTTGTAGAGACGA 57 13437485 13437503 TAGGGACTGAATGGATTGG 58 NA Drosophila melanogaster 50 CG14132 FBgn0040817 FBtr0113334 3 1 1 92 3L 11708272 11708290 AATACGAGAGTGGAATCGC 59 11708198 11708216 CGGCACAAACTTTATCCAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 SuUR FBgn0025355 FBtr0076203 1 1 1 80 3L 11059304 11059322 GAGGTATTCAGTAAGCGCA 59 11059364 11059470 ACGAAAGTCCTTGATGTACTC 59 NA Drosophila melanogaster 50 CG14823 FBgn0035734 FBtr0076908,FBtr0076905 3 2 4 191 3L 7060745 7060763 CTGCCACGGATAATATTCC 57 7061142 7061160 CATAGCTACGCACAATACG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Dat FBgn0019643 FBtr0072255,FBtr0072254 2 2 2 157 2R 20043491 20044428 TTTCTTCAAGGATGAACCG 57 20044548 20044567 GCCTCATAAGTCCATTTAGG 57 NA DesignRelaxed Drosophila melanogaster 50 Amyrel FBgn0020506 FBtr0087117 1 1 1 90 2R 12539605 12539623 GATCACCTCATCGAACTGG 59 12539477 12539551 GGCTGCTGTAGATGTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2614 FBgn0032873 FBtr0081388 1 1 1 80 2L 20657196 20657272 CTAAGAACCATGAGGAACG 57 20657314 20657334 GAAGTCCAGTAGGAAATTGAG 58 NA Drosophila melanogaster 50 bwa FBgn0045064 FBtr0081331 3 1 1 184 2L 20069274 20069293 GATACTATCCCAAGTTCGTG 57 20069512 20072369 CCTCTGGTCACTAACTCTC 58 NA Drosophila melanogaster 50 CG4161 FBgn0028892 FBtr0080735 2 1 1 60 2L 15433563 15433581 GCCTATTTGACGCTAAGGA 59 15433605 15433623 GGAGCCGCATAATAATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Or-CD10 FBgn0065071 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR31576 FBgn0051576 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snmRNA:430:CR33743 FBgn0053743 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CR41509 FBgn0085792 FBtr0114245 2 1 1 63 YHet 327637 327656 CAGAAACCATTTGACATGGT 58 327522 327612 CTTGATCATCCTTTACTGCT 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12061 FBgn0040031 FBtr0113684 1 1 3 205 XHet 23169 25000 GGTTATGTGATGAACACGC 59 25168 25187 GAAGAAGATGGATCTAGCAC 57 NA DesignRelaxed Drosophila melanogaster 50 slgA FBgn0003423 FBtr0077207,FBtr0077204,FBtr0077209,FBtr0077205,FBtr0077208,FBtr0077203,FBtr0077206,FBtr0077210 3 8 8 104 X 21253980 21254060 CAACACGATTGTAAAGGCTG 59 21254126 21254145 ATCATTTCCAGGGTGATACG 59 NA Drosophila melanogaster 50 CoRest FBgn0053525 FBtr0091480,FBtr0091482,FBtr0091481 1 3 5 171 X 19418034 19418052 ATCCATAGCCAGTTTGGTC 59 19418187 19419220 GGCGATTATCTTGTCATCG 58 NA Drosophila melanogaster 50 CG32533 FBgn0052533 FBtr0074786 1 1 1 104 X 19372183 19372201 AAACGCTCTCAGAGAAACC 59 19372043 19372061 GAAGATAAGGACGTCACCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6540 FBgn0030943 FBtr0074601 2 1 1 76 X 18543308 18543326 ATAACATCATATCGCCGCA 59 18543366 18543384 GAATATCAGGTCCATGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wupA FBgn0004028 FBtr0074526,FBtr0074523 1 2 7 80 X 18004587 18004605 CAACGCGTATACAGTTTGG 59 18000953 18004544 GAGATCGTTGATCTCTTGGG 59 NA Drosophila melanogaster 50 CG7192 FBgn0030894 FBtr0074527,FBtr0074528 2 2 2 84 X 17992531 17992619 TGAATGATATACCTACACTGCC 59 17992468 17992486 CACAAGATCTGACGTTCCA 59 NA Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089658,FBtr0089660,FBtr0089657,FBtr0089661,FBtr0089659,FBtr0089662,FBtr0089663 1 7 7 82 X 17844790 17845235 CTAACTGTCAGGTTCCTCG 59 17844726 17844744 ATGATGGCGATTATGTCGA 58 NA Drosophila melanogaster 50 Arp8 FBgn0030877 FBtr0074544 2 1 1 72 X 17753975 17753993 GAAGAGCGTCTGAAGATCC 59 17753921 17753939 CATAGACATCGTTGACCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fim FBgn0024238 FBtr0074443,FBtr0074441,FBtr0074442 3 3 3 118 X 17182048 17182066 ACTCAATCTAGCCTTCGTG 59 17181556 17181966 AATTGCGGTAGGTCTTCTC 59 NA Drosophila melanogaster 50 CG5172 FBgn0030830 FBtr0114540 1 1 2 297 X 17115619 17115637 CTGATCGCCTTAACCTCAG 59 17116320 17116338 CATAACCTCCTTGTCCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13002 FBgn0030804 FBtr0074343 1 1 1 77 X 16784352 16784370 GGAGGAGATGATTTGTCCG 59 16784540 16784558 TTTCTCACAAACACGTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG32569 FBgn0052569 FBtr0074327 3 1 1 60 X 16632516 16632534 GAAGCAACAGGAATTGGAG 58 16632558 16632576 TTCGACTTGAGACTTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8958 FBgn0030725 FBtr0074207 1 1 1 80 X 15977985 15978003 AGGAGATTGTTTCGGAGAC 58 15978047 15978119 ACTTCACAACTAGACAGGG 58 NA Drosophila melanogaster 50 exd FBgn0000611 FBtr0074136,FBtr0074135,FBtr0074137 3 3 3 94 X 15888237 15888256 GAATTGGAGAAGTACGAGCA 59 15888313 15888394 TTTGGTGTAATGGGTCTCG 59 NA Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 3 9 9 111 X 15788792 15788878 AGTTACCGAATATGGCGAG 59 15788952 15788971 TTTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 acj6 FBgn0000028 FBtr0074015,FBtr0100328 2 2 4 92 X 15271599 15271617 TCATCATCCTGCGATTCTC 59 15265710 15266193 GAAGATATCACCATTCTGACG 58 NA Drosophila melanogaster 50 rab3-GEF FBgn0030613 FBtr0112983 1 1 2 95 X 14993063 14993856 TGGATAAGTTTACGCTGCA 59 14993915 14993933 TATTCTTGCTCACTCCAGC 59 NA Drosophila melanogaster 50 CG32603 FBgn0052603 FBtr0073894 2 1 1 72 X 14079098 14079116 TCGTACTCCTCTTACTCCG 59 14079152 14079170 AGTAGGTCTTCACAACAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10990 FBgn0030520 FBtr0112981,FBtr0073840 1 2 2 165 X 13644648 13644666 AAGCAGCTAGATCTCACCT 59 13644371 13644389 TCTTGTCGGTTAGGAATCC 58 NA DesignNoJunction Drosophila melanogaster 50 up FBgn0004169 FBtr0073851,FBtr0100563,FBtr0073852 2 3 6 91 X 13493488 13494116 GATGAAGAGTACACCAGCTC 59 13490749 13490767 TGACGCTTGATGAACTCTG 59 NA Drosophila melanogaster 50 up FBgn0004169 FBtr0073851,FBtr0100561,FBtr0073853,FBtr0100563,FBtr0073852,FBtr0100562 3 6 6 169 X 13489267 13489365 TCAGGACTACGATTTGAAAGAG 59 13489054 13489072 TCTTGTCGTCATAAGAGCG 59 NA Drosophila melanogaster 50 CG1640 FBgn0030478 FBtr0073771,FBtr0073770,FBtr0073774,FBtr0073772,FBtr0073773,FBtr0073769 1 6 6 82 X 13268114 13268132 ATTCAACCGTTAGACGTCC 59 13268315 13268333 ATGTTATCCAGTGTGAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 sno FBgn0005410 FBtr0073736 1 1 4 84 X 13094927 13097750 GGTAACGGTGAGTTATGCA 59 13094861 13094879 CTGATTATTCCCGACTCCG 59 NA Drosophila melanogaster 50 CG2186 FBgn0030243 FBtr0073381 1 1 1 204 X 10752389 10752407 ATGAGTTGCTACTCTCGGA 59 10752640 10752658 AAAGTTGGTGCTACCTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2124 FBgn0030217 FBtr0071491 1 1 1 60 X 10491015 10491033 ATGGGCTTCTTTAAGACAC 57 10491057 10491075 GATAGAGTTGCGTTAGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32687 FBgn0052687 FBtr0071458 3 1 1 169 X 10377269 10377389 AAGAATCTGACTGAGCTGAG 59 10377119 10377137 TTCAAATACTCGGCCAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG12640 FBgn0030202 FBtr0071464 2 1 1 60 X 10326711 10326729 CAACCAGAACCAGTACCAG 59 10326669 10326688 TTGATTCTGATTCGGACTCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12645 FBgn0030181 FBtr0112973 1 1 2 99 X 10048128 10048146 AAGAGGTCACCTAATGCTC 58 10048443 10048461 AGCCATTCCATAGATACGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG1354 FBgn0030151 FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386 3 4 4 161 X 9674775 9674793 TCTGCTCAAGAACTTGGAC 59 9674918 9675202 AAGGCCTCAATATCATGGG 59 NA Drosophila melanogaster 50 l(1)G0232 FBgn0028341 FBtr0071405,FBtr0071406,FBtr0100193,FBtr0100192,FBtr0071404,FBtr0071407 1 6 6 83 X 9524045 9524065 CCGTCGGATTATATTAATGCG 59 9523917 9524001 CTTTGGTAATGGACCTTGAG 58 NA Drosophila melanogaster 50 Lim1 FBgn0026411 FBtr0071279 3 1 1 81 X 8681694 8681715 GACAATAAGTTCATCTGCAAGG 59 8662967 8681652 TTAATGAATCGCTCAGCGA 59 NA Drosophila melanogaster 50 CG12065 FBgn0030052 FBtr0071215,FBtr0071214 1 2 4 91 X 8480265 8480589 ATACACCACAGTCGATTCC 59 8481291 8481311 GAGTATACACATTCGATTCGC 58 NA Drosophila melanogaster 50 CG12065 FBgn0030052 FBtr0071217,FBtr0071215,FBtr0071214,FBtr0071216 3 4 4 68 X 8481547 8481627 GATCAGCAATAGCAAGGAG 57 8481659 8481677 AAGTAGGTCTTCACGTCCT 59 NA DesignRelaxed Drosophila melanogaster 50 Es2 FBgn0023506 FBtr0071198 2 1 1 60 X 8357164 8357183 GAACGTTACCATTGATACGG 58 8357204 8357224 TTTAGTGGGTATCTTGAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17982 FBgn0030006 FBtr0071191 1 1 1 60 X 8037123 8037141 GACAAAGGTGAATACAGCC 58 8037081 8037099 GATAATCGTGGACGTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4557 FBgn0029912 FBtr0070994 2 1 1 158 X 6741283 6741301 CAACACAACGACCTTTGAG 59 6741423 6741500 TTCTCCTTCATCGTTTCCA 58 NA Drosophila melanogaster 50 pod1 FBgn0029903 FBtr0070965,FBtr0070968,FBtr0070967,FBtr0070964,FBtr0070966 2 5 6 106 X 6701674 6702857 CAATTATTCCACGTTTGGGTC 59 6702925 6702943 GATATTCTCGTGGGATCCC 58 NA Drosophila melanogaster 50 CG4660 FBgn0029839 FBtr0070886 1 1 1 196 X 5973808 5973827 GTTGTACCACATGAACAACG 59 5973505 5973649 CCCAGTAAATAATCCGCGA 59 NA Nonspecific Drosophila melanogaster 50 CG33080 FBgn0053080 FBtr0070845,FBtr0070844 3 2 2 141 X 5604995 5605517 TATTTCTGATCGGCTATGCC 59 5604873 5604892 AATTGACCCGATATCACCTC 59 NA Drosophila melanogaster 50 CG6978 FBgn0029727 FBtr0070715 1 1 1 60 X 4679439 4679460 CTTCAAGATCAATCATCTGGAC 58 4679481 4679499 GGTTACGGAGATTAGCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070509,FBtr0070510 2 2 14 162 X 3140216 3140334 GAGTATATTGCCGGTACCTC 59 3140459 3140477 AAGTCTCGTTCGAATTGCT 59 NA Drosophila melanogaster 50 mRpL16 FBgn0023519 FBtr0070314 1 1 1 245 X 1784569 1784656 ATACCAGAATGTGGAGCAG 59 1784865 1784883 GTGTTGACGTTCATCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG14811 FBgn0029590 FBtr0070373 2 1 1 61 X 1715817 1715835 TTCTCCCAAGCTTGTAACC 59 1715774 1715793 GTGATAGAAATACGACGAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14798 FBgn0029588 FBtr0089693,FBtr0089694 2 2 2 293 X 1587078 1587096 AAATCGAGCCTCACATCAG 59 1587475 1587493 GACAAAGTCATGGGATCCT 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG11379 FBgn0040362 FBtr0070198 1 1 1 62 X 1074535 1074553 CATCGCTCTTACTGGAGAC 59 1074579 1074597 ACAGTTTGCTAAGGGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13361 FBgn0029532 FBtr0070149 3 1 1 60 X 647114 647132 CCAAGTTCTCTATCCACCA 58 647072 647090 GAATCGCTCTACAATCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 elav FBgn0000570 FBtr0114366,FBtr0070091,FBtr0100254 1 3 3 60 X 412385 412404 AGTAGGCTTTATTCGATTCG 57 412344 412362 GTTCAAGGCAATGATAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41428 FBgn0085647 FBtr0114091 1 1 1 60 U 4187017 4187036 GATTCAATCAAGTGGACGAC 58 4186976 4186996 TGCTGACTCGAATGATATCTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CaMKII FBgn0004624 FBtr0100148 1 1 6 106 4 1065803 1065822 CGATTCATCTAGCACTACTC 57 1059076 1064103 AAAGGTTAACTTCAGGCTC 57 NA Drosophila melanogaster 50 plexA FBgn0025741 FBtr0089226,FBtr0089223,FBtr0089225,FBtr0089224 2 4 5 118 4 1036234 1037009 AGATTTAGAGTGGAGAACAGG 58 1036136 1036154 CCGGAACATTATAGTGCTG 57 NA Drosophila melanogaster 50 bt FBgn0005666 FBtr0089793 2 1 4 101 4 748859 751408 CTAAACTTCGACAGTGCGA 59 751472 751491 CTTCATGGTGATCAATGTGC 59 NA Drosophila melanogaster 50 Ephrin FBgn0040324 FBtr0089078,FBtr0089075,FBtr0089077,FBtr0089076 1 4 4 82 4 596940 597611 TTAACGGAAACGATGACCA 59 597655 597675 ACCACTATTATAGGTCAGCTC 58 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 2 7 7 83 4 208987 209060 CGGATCATAGACTTACGGA 57 208922 208940 CGAAGCATGGTTTAGTCAG 58 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156 1 8 10 80 4 115558 115579 ACGAGATAACTATGGTTACGTG 59 115618 120041 ATATTATTGCCTCCCGAATCC 59 NA Drosophila melanogaster 50 CR34285 FBgn0085314 FBtr0112481 1 1 1 60 3R 15212525 15212544 AAAGTCATTGGTTCTCTGGT 59 15212650 15212668 AGGTAGGAAGTAAACGAGG 57 NA DesignNoJunction Drosophila melanogaster 50 faf FBgn0005632 FBtr0085844,FBtr0085843 2 2 2 80 3R 27608527 27608648 GAAGATGAAGAGGAACACTG 57 27608689 27608709 CACACTAAGGTTGTATAGCAC 58 NA Drosophila melanogaster 50 ttk FBgn0003870 FBtr0085827,FBtr0085825,FBtr0085829 2 3 6 150 3R 27554189 27558647 AACAGCACTTCCGTTACTC 59 27558761 27558779 TTTCATCGCTGATCTCCAG 59 NA Drosophila melanogaster 50 CG11318 FBgn0039818 FBtr0085739 2 1 1 60 3R 26934623 26934643 ACATCTGGTTTACTGTACGTC 59 26934583 26934603 TATGTAGTCGTGCTGAAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33483 FBgn0053483 FBtr0089295 1 1 1 88 3R 26726714 26726735 CGAAGTACAATCCGATATTCAG 58 26726587 26726666 TAGATCATGATCGAATGGGC 59 NA Drosophila melanogaster 50 RpL32 FBgn0002626 FBtr0114556,FBtr0085592,FBtr0085593,FBtr0114555 1 4 5 60 3R 25871413 25871431 CGGATCGATATGCTAAGCT 59 25871309 25871327 ACTCTGTTGTCGATACCCT 59 NA DesignNoJunction Drosophila melanogaster 50 janA FBgn0001280 FBtr0085595,FBtr0085597,FBtr0085596 1 3 3 84 3R 25864787 25864805 GAAGGTCTACGGATACTCG 58 25864615 25864633 GTAGTCCGGGTATTTGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Axn FBgn0026597 FBtr0085554,FBtr0085553,FBtr0085555 2 3 3 94 3R 25856981 25856999 CACCTCAACTTCTACTTCG 57 25857057 25857153 CGCAAGAATCTGTAGATGG 57 NA Drosophila melanogaster 50 Nlp FBgn0016685 FBtr0085552 2 1 1 136 3R 25831117 25831135 AAGGAGAACGAGTTCAACG 59 25835490 25835509 TTGAATGTCACCTTCGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11504 FBgn0039733 FBtr0085548,FBtr0085547,FBtr0085549 3 3 3 61 3R 25824886 25824905 AGGATAGCTACTTTGAGGAG 57 25824929 25824947 GTAGTACATGCGTTTGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15525 FBgn0039732 FBtr0113307 1 1 2 89 3R 25829530 25829548 GAATTCGACGAAGAAGCAG 58 25823293 25829478 CCATGTGAAGTTTGTTTGGA 58 NA Nonspecific, InUTR Drosophila melanogaster 50 CG7816 FBgn0039714 FBtr0089925,FBtr0089924,FBtr0089922,FBtr0089920,FBtr0089923,FBtr0089921 2 6 6 80 3R 25690545 25690625 AGGGCGATAATCAAGATCC 58 25690483 25690501 TCGTGAAGATCAGTATGCC 59 NA Drosophila melanogaster 50 CG14531 FBgn0040619 FBtr0085312 1 1 1 69 3R 24632875 24632893 ACAGGACATGTTATGAACG 57 24632979 24632997 TATCCAGAATGAGCTTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 woc FBgn0010328 FBtr0112857,FBtr0085178 1 2 2 81 3R 23083857 23083875 GTACTACGAGCGGTTTACC 59 23083730 23083813 GACAATGTATTGCGAATCGT 58 NA Drosophila melanogaster 50 CG5455 FBgn0039430 FBtr0085016,FBtr0085017,FBtr0085015 2 3 3 83 3R 22293798 22293874 CGATGATAGCGACTATGCT 59 22293920 22293939 AAAGTGGGAAAGCTGTACTC 59 NA Drosophila melanogaster 50 RpL34a FBgn0039406 FBtr0084973 1 1 2 144 3R 21884950 21884968 ATTTCCGGAGAGGTTTGTG 59 21884597 21884615 CTTCACGTACTGGTACACC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Fur1 FBgn0004509 FBtr0089982 2 1 6 90 3R 21174051 21177846 GTGCTTAGAGTGCAATGAC 58 21173979 21173997 TTGGAACTTGTCCAATGGA 59 NA Drosophila melanogaster 50 CHKov1 FBgn0045761 FBtr0113351,FBtr0113352,FBtr0113350 1 3 5 60 3R 21149489 21149509 GTGTATATGGTCGACTTTCAG 58 21149449 21149467 AGTAGTACAAGTCCTGAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ela FBgn0013949 FBtr0084708,FBtr0084709 3 2 2 61 3R 20692052 20692071 TGAACTATCATCGCTATCCG 59 20692095 20692113 GAAATGATGGTCCCAATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sec10 FBgn0027103 FBtr0084547 3 1 1 80 3R 19962227 19962245 AGACGAACATCATTGTCCA 58 19962286 19962365 AGTACTTGGGTGTATTACTCAC 59 NA Drosophila melanogaster 50 CG10694 FBgn0039147 FBtr0084542 3 1 1 60 3R 19933622 19933641 CTCAGGAGGTTGTTTCAGAG 59 19933664 19933682 TGATCACTTGTCTGTACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS19b FBgn0039129 FBtr0084519 3 1 1 114 3R 19758878 19758897 CCTTCACCAAGGTCTATAGC 59 19758713 19758731 ATGTTAGCAGCTTCCAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6921 FBgn0038985 FBtr0084262,FBtr0084261 1 2 3 85 3R 18380435 18380453 TAAAGATTGTCGAGGAGCG 59 18380566 18380585 CATAGGTGAGCTCATTAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG12499 FBgn0038968 FBtr0084295 1 1 1 60 3R 18269881 18269899 GAGACAGATTGAGCTTCCT 58 18269839 18269858 CAGGTTCTTGGTGATTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr93c FBgn0045469 FBtr0084159 1 1 1 60 3R 17670501 17670522 GAACTGTACTCTGAAATATGCC 58 17670462 17670480 TAGCAAACAAGGATAGCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GABA-B-R2 FBgn0027575 FBtr0084168 3 1 2 176 3R 17597551 17597631 CACCACAGAAGTTACCGAG 59 17597336 17597354 TGCATCATAGTTGGAGCAG 59 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 1 22 22 84 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202454 17202549 TTCAGGAATACGATAGCGT 58 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0112915 1 11 12 80 3R 17033375 17036516 ATCTATCAGATCTGGAAGAGG 57 17036558 17036576 TGGGTATCAGATCATAGCA 57 NA Drosophila melanogaster 50 Atpalpha FBgn0002921 FBtr0089510,FBtr0089513,FBtr0089509,FBtr0089511 3 4 8 136 3R 16792304 16792323 CGATTCTTTGCATCGATCTG 59 16792914 16798904 CGAAATCAACCTTGAGTTCAC 59 NA Drosophila melanogaster 50 Atpalpha FBgn0002921 FBtr0089510,FBtr0089513,FBtr0089509,FBtr0089511 1 4 8 134 3R 16792914 16798904 GTGAACTCAAGGTTGATTTCG 59 16798998 16799018 CATCTTACGAATGCCAAACAG 59 NA Drosophila melanogaster 50 CG31191 FBgn0051191 FBtr0083984,FBtr0113399 3 2 2 90 3R 16738194 16738212 AACCTCATGAACAAGTACG 57 16738053 16738143 GGATGACTTCCTTAATCATCAG 58 NA Drosophila melanogaster 50 CG15695 FBgn0038832 FBtr0083967 3 1 1 62 3R 16669091 16669177 GATACAACAAGATGGGCGA 59 16669202 16669221 TGTTAAATCCCGTGAGAACC 59 NA DesignRelaxed Drosophila melanogaster 50 CG34119 FBgn0083955 FBtr0110822 2 1 1 135 3R 16225525 16225543 AATATCGAGTACCACGACG 58 16225408 16225426 GTATGCGGTCGTCATAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cic FBgn0028386 FBtr0083872 3 1 2 144 3R 16122207 16124109 CCACAGATCTTAGAGCTGC 59 16124217 16124235 AACATCTTCTGACTGGCTG 59 NA Drosophila melanogaster 50 ATPsyn-d FBgn0016120 FBtr0083728,FBtr0083727 2 2 2 92 3R 14921153 14921171 AATCCTCGATCAACTGGTC 59 14921227 14921245 CATAGATGTCCGACTTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fru FBgn0004652 FBtr0083641,FBtr0083643,FBtr0083645 2 3 13 91 3R 14340833 14340851 GAACATCGAAACGGATGTG 59 14261499 14340778 GGTCAGTGTTGTACCTAGG 58 NA Drosophila melanogaster 50 CG7685 FBgn0038619 FBtr0083630 1 1 1 129 3R 14231128 14231147 GATCCCATCAAGATTGTCAG 58 14231302 14231320 AGTAGTTGTCGTTCAGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7675 FBgn0038610 FBtr0083582,FBtr0083583,FBtr0083581 1 3 3 114 3R 14204680 14204956 CAGTGAAGGATGAGATCGT 58 14204584 14204602 TCGGTCTTCACAATGTCAG 59 NA Drosophila melanogaster 50 Ssdp FBgn0011481 FBtr0083612,FBtr0083611,FBtr0083613 3 3 3 77 3R 14020957 14020975 AAGATCAAGGAGAGCATGC 59 14020898 14020918 TTATGGCATAAAGTAGTCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7208 FBgn0038575 FBtr0083618,FBtr0083617 2 2 2 282 3R 14010550 14010568 GAAGAGCTCTATGCTTCTG 57 14010222 14010240 AAATATGGAAGCCATGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3534 FBgn0038463 FBtr0083370 1 1 1 94 3R 12824287 12824520 GTAATCAAATTCAGCTCGCC 59 12824577 12824595 TTGTAGCCAAGGTCTTCAG 59 NA Drosophila melanogaster 50 CG4699 FBgn0038364 FBtr0083175,FBtr0083176,FBtr0083177 3 3 3 111 3R 11622600 11623024 CTCTCGCTACCAATCACTC 59 11623098 11623117 TCTTCATCTCCAAATCGGTC 59 NA Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089960,FBtr0089968 3 2 12 198 3R 11121251 11125836 TAAGAAATACGAAGAGGTGGC 59 11127363 11127381 GATTTGCGTCTCAAAGGTC 59 NA Drosophila melanogaster 50 Kif19A FBgn0038205 FBtr0082912,FBtr0082911 1 2 2 80 3R 9939295 9939315 GCATATGATTATCTCCCACTG 58 9939173 9939253 CCTTCTGATTCAATGTCGT 57 NA Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082805 3 1 8 87 3R 9488126 9488710 AATCATCCTCTCGTTATGGC 59 9488759 9491191 ATGTAATCCTTGAGATCGCG 59 NA Drosophila melanogaster 50 sqd FBgn0086897 FBtr0082857 2 1 4 91 3R 9470139 9470160 GACTTATACTTGGAGGATATGC 57 9468920 9470087 ACAAACAGTTTCCATCAGC 58 NA InUTR Drosophila melanogaster 50 wntD FBgn0038134 FBtr0082775 3 1 1 60 3R 9118822 9118840 CTTCATGGGTATTACGAGC 57 9118780 9118799 GTACTGGTAGTAGCTCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8031 FBgn0038110 FBtr0082719 1 1 1 80 3R 8835324 8835344 CTGGATATACGTACTGTGGAG 59 8835200 8835283 GTATGAAGATTCGCTTGACG 59 NA Drosophila melanogaster 50 Vha55 FBgn0005671 FBtr0082670 2 1 2 124 3R 8453265 8453283 TGCACTTTCAAGGTAGAGG 59 8451938 8453177 CAGTCTTGTAAGTCAAGCG 58 NA InUTR Drosophila melanogaster 50 lig3 FBgn0038035 FBtr0082600 1 1 1 80 3R 8224924 8225005 AGAGAAGCTTAGAACGCTC 59 8224862 8224880 CTCTGAGTATCGAGACAGC 58 NA Drosophila melanogaster 50 GstD9 FBgn0038020 FBtr0082608 2 1 1 60 3R 8192396 8192417 CTATACTGATTTATCTGGCCGA 59 8192357 8192375 GGATCCTTGGGATAAAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10014 FBgn0038000 FBtr0082559 3 1 1 130 3R 8049046 8049064 CTTCAGAGATTCTTCCGCA 59 8049245 8049263 TCATAGCCATCCTTTGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 dpr17 FBgn0051361 FBtr0082543,FBtr0082542 2 2 2 100 3R 7936142 7936160 AGATTAGCGATAGTGACGA 57 7936224 7936318 AATTAATGAGCCGATCGTG 57 NA Drosophila melanogaster 50 CG31116 FBgn0051116 FBtr0082527,FBtr0082526 2 2 5 130 3R 7628405 7629450 GGCGTTCTACTATATGTATGGT 59 7628048 7628314 CCAGCAGTTCCTTATTCCT 58 NA Drosophila melanogaster 50 CG10898 FBgn0037911 FBtr0082410 3 1 1 129 3R 7384370 7384388 CTTCTGATGATCGAGGAGG 58 7384552 7384571 CATTTAGACCAGTCTCTTCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG17734 FBgn0037890 FBtr0082360,FBtr0082361 3 2 2 210 3R 7069520 7069538 CAGGAAAGCAAAGGAATCG 59 7068560 7068578 CTTGTCGAACAGGTACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS25 FBgn0086472 FBtr0082369,FBtr0082370 3 2 2 127 3R 7041512 7041531 AGAAGCTGTACAAGGAAGTG 59 7041336 7041422 CTTGATCAGACCCTTCTCG 59 NA Nonspecific Drosophila melanogaster 50 Ugt86Dc FBgn0040257 FBtr0082337 3 1 1 60 3R 6981961 6981982 AGGTGATATCCAGTCAATATCG 59 6982003 6982021 CAATAAACAGCTCGTTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Best1 FBgn0040238 FBtr0082183,FBtr0114590 2 2 2 171 3R 5991953 5992985 CAAATTGCTGCTCAGATGG 59 5991452 5991473 GAGTTCTCTGTAACTATCACAG 57 NA DesignRelaxed Drosophila melanogaster 50 CG8312 FBgn0037720 FBtr0082076,FBtr0082075 1 2 2 62 3R 5449441 5449459 TCCTGCCCACTATTAACAG 58 5449485 5449503 GATCCTCGGCATTGTAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rel FBgn0014018 FBtr0089340,FBtr0089339,FBtr0089341,FBtr0089338 2 4 4 60 3R 4870435 4870454 TGAAGAATGTGTATCCGGAG 59 4870394 4870414 TTGACCTTACATGGAATCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pif1A FBgn0027540 FBtr0091714,FBtr0091715 1 2 2 98 3R 4612636 4616239 GATGTCAAGATAACCCAACTC 58 4612558 4612576 ACTGCTCTTCATTGTTGTG 58 NA Nonspecific Drosophila melanogaster 50 Or85d FBgn0037594 FBtr0081872 2 1 1 95 3R 4379496 4379515 TTATTAAGAGGGCCCAACAG 59 4379634 4379652 TGTACGAGAGTTGCAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1162 FBgn0026564 FBtr0081669 2 1 1 70 3R 2580406 2580426 CATAAACTGTCCAAATCGAGC 59 2580356 2580374 TAATGCAATGAAAGCAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15177 FBgn0037461 FBtr0081700 1 1 1 113 3R 2454467 2454485 AAGAACACCGGAGTTATCG 59 2454322 2454390 AAATTCAGTCATGTCCGCT 59 NA Drosophila melanogaster 50 CG15580 FBgn0037398 FBtr0078622,FBtr0078621 2 2 2 93 3R 1881011 1881138 AATACCCGAATCCTATACGC 59 1880937 1880955 TGTAGTTATTCCGACGCAC 59 NA Drosophila melanogaster 50 RpL13A FBgn0037351 FBtr0078705 1 1 1 131 3R 1450615 1450633 GTTGTTATTGATGGTCGCG 59 1450728 1450746 GTTCCTGTAGAAGTGTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rga FBgn0017550 FBtr0078741,FBtr0078742 1 2 2 122 3R 1433498 1433519 GATAAGAGACAAACTAACAGCG 59 1433306 1433415 CGACTATGCAATTCAGCAG 58 NA Drosophila melanogaster 50 exba FBgn0037346 FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745 1 7 7 82 3R 1423978 1423999 GGTTCTATTATTCGTAAAGGGC 58 1423651 1423935 AACCGTTGACTAACCAGAG 59 NA Drosophila melanogaster 50 CG33927 FBgn0053927 FBtr0091931 2 1 1 269 3R 516124 516142 TCAGTGTCGTTTAAAGGCA 59 515815 515833 CCCATTATATGCACTGGAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG32944 FBgn0052944 FBtr0110851,FBtr0078948 2 2 2 94 3R 233716 233789 CTGCAGAGGTTACTTTCCA 59 233640 233658 CTCTGGAAGTCAATGTTGC 58 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113343 3 1 15 193 3R 111913 120842 TTAAAGTTCACCGCTTCTG 57 120999 121298 GATGTTGTACTTATCGCGA 57 NA Nonspecific Drosophila melanogaster 50 Gel FBgn0010225 FBtr0078971,FBtr0078968,FBtr0078973,FBtr0078972,FBtr0078969 3 5 5 136 3R 66120 66138 TCAATACGAGCAAGAGGAC 59 66237 66320 TAAAGTAAAGCTTTGCCGTG 59 NA Drosophila melanogaster 50 CG34031 FBgn0054031 FBtr0100086 1 1 1 60 3L 23178694 23178713 GGAAGAAACAGTTGACTTCG 59 23178733 23178754 GTAGGTATCCATAGTCCATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32350 FBgn0052350 FBtr0070046 2 1 1 60 3L 23142361 23142379 GATTGTTGCATCGAGAAGG 58 23142319 23142338 TACTGAAATCGTACCAATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41454 FBgn0084017 FBtr0111173 3 1 1 145 3L 23131362 23132879 ACATTCGTTGACTTTCCTC 57 23132987 23133006 AAACAGCGACGGATATAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6838 FBgn0037182 FBtr0078540,FBtr0078539,FBtr0113187,FBtr0113186 2 4 4 89 3L 22709293 22709406 GTCAGTAAGGATCCAAACC 57 22709222 22709240 ATTAAGCAGATTCACGCTG 58 NA Drosophila melanogaster 50 Trxr-2 FBgn0037170 FBtr0078514 1 1 1 64 3L 22544356 22544374 CAAAGGTCTCATCGAGGAC 59 22544401 22544420 CAATCTTGTCGTCATGAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7611 FBgn0037094 FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362 3 8 8 110 3L 21518808 21519093 GACCTTAAGGACCTAGAGC 58 21519167 21519185 ATTGCCATCATCCAAATGC 59 NA Drosophila melanogaster 50 CG7611 FBgn0037094 FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362 1 8 8 84 3L 21519967 21519985 TAAACAGCATAGCCTTTCG 57 21520031 21520298 CTATCAAAGTTGTACCCTCTG 57 NA Drosophila melanogaster 50 CG5047 FBgn0037008 FBtr0078215 1 1 1 60 3L 20513565 20513584 ATGTGAACAACTCGAGTACC 59 20513524 20513542 ATACTGTGCAGATCCACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5976 FBgn0036999 FBtr0078200,FBtr0078199 3 2 2 60 3L 20468719 20468738 CTATCCGATAAGCTACACCT 58 20468760 20468779 CCACAACTCGAGGTATAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32428 FBgn0052428 FBtr0078222 3 1 1 221 3L 20465903 20465921 AATGATGGCAATAACCTCG 57 20464208 20464227 CTGCGTTCCAATTATTTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eRF1 FBgn0036974 FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177 3 6 6 81 3L 20344765 20344786 TGGAGATTATCACGGATAAGTC 59 20344828 20345922 TTGTAGCGTAAGATACCGC 59 NA Drosophila melanogaster 50 rdgC FBgn0004366 FBtr0074834,FBtr0074833,FBtr0074835 3 3 4 125 3L 20253973 20253993 GCAATCTTCATCCAGAAATGG 59 20254080 20254321 TTTGTATAGCTCAGCCTGG 59 NA Drosophila melanogaster 50 CG6951 FBgn0036959 FBtr0074828,FBtr0074829 3 2 2 80 3L 20237666 20238044 CTCATTATACAGGTGGGCA 58 20238088 20238106 CTTGGATGCACGATATGTG 58 NA Drosophila melanogaster 50 CG6933 FBgn0036952 FBtr0074855,FBtr0074854,FBtr0074853 2 3 3 61 3L 20211888 20211906 TGTACCCATAACCGATGTG 59 20211845 20211863 TTCTTGCAACCCTCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpn1 FBgn0028695 FBtr0074893 3 1 1 60 3L 19909526 19909545 GATACTTCTGTGGGATGTGG 59 19909565 19909586 GGTGGAGTACAAGTACTTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tey FBgn0036899 FBtr0074960 1 1 1 85 3L 19649968 19649986 ATCACAGGATTACGATGCC 59 19647007 19649921 TATGCAGATGTCTCAAATCCC 59 NA Drosophila melanogaster 50 CG18233 FBgn0036795 FBtr0075103 1 1 1 100 3L 18599371 18599389 TTGAAAGGCTTTGCAACAG 59 18599520 18599538 TGTAATTGGCTATTGGCCA 59 NA DesignNoJunction Drosophila melanogaster 50 Cyp312a1 FBgn0036778 FBtr0075135 1 1 1 93 3L 18123737 18123755 CTGGAGGCGTGTATAAAGG 59 18123602 18123681 AGAAGTCATTGATTGTGCAG 58 NA DesignRelaxed Drosophila melanogaster 50 MED19 FBgn0036761 FBtr0075160 3 1 1 126 3L 17837958 17837977 TACCACATATGTCACACCTG 59 17837786 17837804 TTTCTCGTAAGTCTCCAGG 58 NA DesignNoJunction Drosophila melanogaster 50 Eip74EF FBgn0000567 FBtr0075202,FBtr0075203,FBtr0100411,FBtr0075204 3 4 4 247 3L 17558677 17558695 TCTGCTCCACATAAAGACG 59 17557952 17558466 GAAATGAACCTGTTGTGGC 59 NA DesignRelaxed Drosophila melanogaster 50 Nedd4 FBgn0036736 FBtr0075179,FBtr0075178 2 2 4 111 3L 17527653 17531772 TAACAGTGATAACGACTCTGG 59 17531914 17531932 GATTCTGACATACGGGTCG 59 NA Drosophila melanogaster 50 CG6652 FBgn0036687 FBtr0075292 2 1 2 153 3L 17014634 17014810 AGGAGTACACTATGCTGGA 59 17014499 17014517 TCGATTTGACTAGGTGGAG 58 NA Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 3 8 8 172 3L 16956749 16956767 ACGTCAAGTACAAGGACTG 59 16956901 16956979 CAATAGACCCTTGTGAATCAC 58 NA Drosophila melanogaster 50 CG13025 FBgn0036660 FBtr0075346 2 1 1 60 3L 16771324 16771342 AACATTCTCTGCGAGTTCC 59 16771221 16771241 CAGGAGCTATGTGTATCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Abl FBgn0000017 FBtr0112790 3 1 2 168 3L 16622299 16624488 ACATGAACTTAGAAGCCCTG 59 16622150 16622168 GTAGTCGAACTGTGACCAC 59 NA Drosophila melanogaster 50 fax FBgn0014163 FBtr0100477,FBtr0100478,FBtr0075413,FBtr0075412 3 4 4 190 3L 16398660 16398678 ATGAAGGACAAGTGCTTCC 59 16398260 16398433 TTCTCGTTTGACTTGTCCT 58 NA DesignRelaxed Drosophila melanogaster 50 mib1 FBgn0036558 FBtr0075520 1 1 1 80 3L 16000079 16000097 TCAACAACTTCCAGATGGA 58 15999958 16000035 AGACAGGACACATAGTCTG 57 NA Drosophila melanogaster 50 CG17032 FBgn0036547 FBtr0075511 2 1 1 61 3L 15953272 15953290 CAGTGGTTACAACCAGGAG 59 15953314 15953333 CATTGTTGTAGTTGCTGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGAP71E FBgn0036518 FBtr0075567,FBtr0075569,FBtr0075568 3 3 3 89 3L 15593707 15593796 TCAAGTTCAAGGTCTCTACG 59 15593848 15593866 AGTACTCATAGTTGTCGCG 59 NA Drosophila melanogaster 50 cp309 FBgn0086690 FBtr0099992 2 1 2 85 3L 15074253 15074443 ATGACTATAAGCCTGCAACC 59 15074187 15074205 AATAAGGGAGGTATTCGCG 59 NA Drosophila melanogaster 50 ome FBgn0002997 FBtr0075688 1 1 2 90 3L 14729227 14737299 AGCGATCAGAATCTAATGCA 59 14737352 14737370 ATAGAGCAACCGCTATGAC 59 NA Drosophila melanogaster 50 fz FBgn0001085 FBtr0075743 3 1 2 93 3L 14310429 14359857 AAGTTGAAGGTGACATCCT 58 14359914 14359932 TAAATGCAGAGTGGAAGGA 58 NA Nonspecific Drosophila melanogaster 50 CG32133 FBgn0052133 FBtr0075784 1 1 1 81 3L 14015210 14015289 CATCTGCTAACTGCTTGGA 59 14015147 14015165 AAGGATCGGATAAGTGTCG 58 NA Drosophila melanogaster 50 CG10171 FBgn0036353 FBtr0075865,FBtr0075864 3 2 2 224 3L 13379873 13379892 AGTGTCAACCTGATTTCCAG 59 13379606 13379624 GCTAGGCGATATGTAAGCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 ImpL1 FBgn0001256 FBtr0075843,FBtr0075842 1 2 2 85 3L 13376187 13376205 TACTATGTAAAGCGCACCT 58 13376254 13376272 ATGGGAATGGCCAAATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34242 FBgn0085271 FBtr0112436 2 1 1 116 3L 12527160 12527178 TAGCTAAATGGCAGTCCTG 59 12527257 12527276 TTCTCAGTGTTAACCATGGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 rols FBgn0041096 FBtr0076055,FBtr0076057,FBtr0076053 2 3 5 168 3L 12006171 12006190 TTTAACCACAAGAATCTGCG 58 12005822 12006040 GAGTATGATCTCCCGACAG 58 NA Drosophila melanogaster 50 viaf FBgn0036237 FBtr0076062 3 1 1 63 3L 11985636 11985654 CAGGATTATGTCAACGAGG 57 11985591 11985609 CATACAGGTGGAGTACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7257 FBgn0036224 FBtr0076040 2 1 1 60 3L 11936183 11936201 GACTTGATCGCAAATTGGA 58 11936225 11936243 TTAAGAATGTCCATACGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10361 FBgn0036208 FBtr0076084 1 1 1 120 3L 11793262 11793280 CAACTACTTAGGACTGGCG 59 11793099 11793117 CTTGTGTATATCCTGCGTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG34240 FBgn0085269 FBtr0112434 3 1 1 60 3L 11222325 11222344 GAATATCCCGATGACTACGA 58 11222366 11222385 CGTAGTCAATATCCTCATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6199 FBgn0036147 FBtr0076187,FBtr0076188 1 2 2 80 3L 11195966 11196052 AGACTTGGAAGAGACAAACC 59 11195905 11195923 AGAAACTGGTCGAAGAAGG 59 NA Drosophila melanogaster 50 CG6327 FBgn0036115 FBtr0076244,FBtr0076243,FBtr0076246 1 3 4 80 3L 11032852 11033105 CAATCCAAGTTCATACGTTCG 59 11032792 11032810 AGAGATTACCAACGGAAGC 59 NA Drosophila melanogaster 50 CG32055 FBgn0052055 FBtr0076304 1 1 1 60 3L 10212024 10212044 TTTATCAAGGAACTCAGGCTC 59 10211984 10212004 CAAACATACGAAGATCCAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32054 FBgn0052054 FBtr0076314 1 1 1 84 3L 10087188 10087206 ATTGGTGGCATTATCGGAG 59 10087056 10087143 GAAACGAACTGAAGATCAAGAC 59 NA Drosophila melanogaster 50 CG8336 FBgn0036020 FBtr0076384,FBtr0076386,FBtr0076385 3 3 3 127 3L 9624224 9624296 CTCGACAAGTTCACAGGAG 59 9624387 9624405 TAGTATCGATTCGCCTTGC 59 NA Drosophila melanogaster 50 eIF-4E FBgn0015218 FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487 1 7 7 92 3L 9393610 9393692 AGAACATTCGTCCCATGTG 59 9393536 9393554 TATCCAGATCGGTCTTGGA 59 NA Drosophila melanogaster 50 PGRP-LF FBgn0035977 FBtr0076439 3 1 1 86 3L 9343139 9343553 GAACAAGAGGATGTTTGCA 58 9343603 9343621 GTTATAGCCAATGTCGACC 57 NA Drosophila melanogaster 50 bol FBgn0011206 FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538 2 4 4 130 3L 9101077 9101096 TATACCCATGGATCAGTTCG 58 9100463 9100724 TGGTGGGTACATTCATTGG 59 NA Drosophila melanogaster 50 CG6416 FBgn0035917 FBtr0089568,FBtr0089561,FBtr0089563 2 3 8 87 3L 8620819 8627689 ATTGTGAATCAGCCCTACC 59 8627740 8627758 TCAAGTAGGACTCTGTCGT 59 NA Drosophila melanogaster 50 Cbl FBgn0020224 FBtr0076614,FBtr0076615 1 2 2 189 3L 8420110 8420195 ACTATACTGTGAAATGGGCAG 59 8420404 8420422 CACAACGATTTGTTCGGTG 59 NA Drosophila melanogaster 50 Tsp66A FBgn0035786 FBtr0076860 3 1 2 110 3L 7460752 7460831 CGCATTGTAATTTATGCCAC 58 7460902 7460922 CCATATTCGAAGTACATCTCC 57 NA Drosophila melanogaster 50 lark FBgn0011640 FBtr0076842,FBtr0076843,FBtr0076841,FBtr0076844 3 4 5 100 3L 7333781 7333799 TACAGAGATCGCATGTACG 58 7333861 7333986 TAGTCATAGTCCCTAAAGCCA 59 NA Drosophila melanogaster 50 CG14821 FBgn0035719 FBtr0076895,FBtr0113150 2 2 2 96 3L 6939460 6939480 AGCTAAGCAATAAGGACATCC 59 6939537 6939609 GATATTTCCTGGCTTTGCAG 59 NA InUTR Drosophila melanogaster 50 Trn FBgn0024921 FBtr0077002,FBtr0077000,FBtr0077001 3 3 3 118 3L 6187880 6187898 TGTCATCAGATGAGGACCA 59 6187977 6188081 CAGCATGTACTCAATAATCTGC 59 NA Drosophila melanogaster 50 CG10576 FBgn0035630 FBtr0077121,FBtr0077122 2 2 2 210 3L 5757776 5757794 TGACTACACGTTAAAGGCC 59 5756865 5757540 GAGGGAGTAGTTATTGGCG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Fit1 FBgn0035498 FBtr0073209,FBtr0073210 2 2 2 60 3L 4105141 4105159 GCGCTTCAAATACTTCACG 59 4105183 4105201 ATTGATCCTCACTTGGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1120 FBgn0035462 FBtr0073148 1 1 1 269 3L 3807923 3807944 GGATTTCAGTCAACTTATGCTG 59 3808230 3808248 TTCAGCGACATATTCTCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG14968 FBgn0035431 FBtr0073087,FBtr0073090,FBtr0073089,FBtr0073088,FBtr0073086 3 5 5 153 3L 3299986 3300004 TTAAGTATACGCGTCGTCC 59 3299851 3299869 TAGCTCCAGTGATTGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mrtf FBgn0052296 FBtr0072944 2 1 1 90 3L 2723385 2723470 CTATAGTGGTGAAGCAGGAG 59 2723314 2723332 TACAGATGATTGACCGGAC 58 NA Drosophila melanogaster 50 CG12026 FBgn0035289 FBtr0072836,FBtr0072837 2 2 2 200 3L 1890138 1890325 ACATTCTCGTTTCAGTTGG 57 1890655 1890673 GAAATCGTCCGAATTCCAG 58 NA Drosophila melanogaster 50 CG7967 FBgn0035251 FBtr0072809 3 1 1 81 3L 1652372 1652390 TACGCCTTGAAACTATTCC 57 1652242 1652260 AGTAGAAGGCCTTAACGAC 58 NA DesignNoJunction Drosophila melanogaster 50 Psa FBgn0035226 FBtr0072702,FBtr0072699,FBtr0072700,FBtr0072698,FBtr0072701,FBtr0072697 3 6 6 120 3L 1520660 1520678 CTACCGTGAGACCTTTGTG 59 1520761 1521150 CATAGTTACCAGATTGCCGA 59 NA Drosophila melanogaster 50 pUf68 FBgn0028577 FBtr0072710,FBtr0072707,FBtr0072709,FBtr0072708 1 4 4 154 3L 1498415 1498433 GATCCTCTACTGCAAGCTG 59 1498217 1498297 TAGATCGACCCACTCTCAG 59 NA Drosophila melanogaster 50 CG9134 FBgn0035199 FBtr0072659 1 1 3 153 3L 1262022 1269077 AAGTCGATAATGATTGCCC 57 1272984 1273002 TGGTATCGGCAATATTGTG 57 NA Drosophila melanogaster 50 CG9205 FBgn0035181 FBtr0072621 3 1 2 237 3L 1035448 1035564 CAATGTGATGAAGGGATGG 58 1035765 1035783 CCTCAGCTTTACCGTATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG9205 FBgn0035181 FBtr0072621 1 1 2 237 3L 1035448 1035564 CAATGTGATGAAGGGATGG 58 1035765 1035783 CCTCAGCTTTACCGTATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG34057 FBgn0054057 FBtr0100835 2 1 2 82 3L 897935 897953 TCTAAACGAGTACGACTGG 58 898054 898072 AAGGGTATAGAAACAGGCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13876 FBgn0035109 FBtr0072484 2 1 1 60 3L 206545 206566 GGAGCATAAATCAAGCATAGAG 58 206585 206605 CTGAATATGAAGTGAGCTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pk61C FBgn0020386 FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466 2 8 8 87 3L 142804 142822 ATATCGCGACTGCTTAGTG 59 142873 142954 GGTCGAAAGAGTTCTTTGC 59 NA Drosophila melanogaster 50 Tkr FBgn0003715 FBtr0072458,FBtr0100126,FBtr0072457,FBtr0072456 2 4 4 179 2R 20981955 20981973 GGTAAGGAGTTTGGAAAGG 57 20979236 20981812 GAGACCAAACATATGTGGC 58 NA Drosophila melanogaster 50 ST6Gal FBgn0035050 FBtr0072441,FBtr0072442 3 2 2 254 2R 20579631 20579649 CAACTACGAGCTGTACAGG 59 20579225 20579306 GCGGAATTCATCTCTTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG3825 FBgn0034948 FBtr0072204 1 1 1 60 2R 19864356 19864374 CCTTCCTCTTTGTTCTCCG 59 19864314 19864334 CGATATTGCTCGTAGATAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5594 FBgn0025698 FBtr0072137,FBtr0072139 1 2 4 90 2R 19811537 19811555 GTAGACCACCATTATGACG 57 19811609 19811948 TTTGAGAATCGTGATGCTG 58 NA Drosophila melanogaster 50 TM4SF FBgn0020372 FBtr0100255,FBtr0072130 2 2 2 140 2R 19767863 19767957 ATAGCCATATTCCAGAGCC 58 19768061 19768079 CTTGTCCTGTATGGTCAGG 59 NA InUTR Drosophila melanogaster 50 CG5539 FBgn0034907 FBtr0072123 3 1 1 60 2R 19692532 19692552 CCTATAAGACTCTGAACAGCG 59 19692574 19692592 ACTATCCAGTATTTGGCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alphaPS5 FBgn0034880 FBtr0072063 3 1 1 83 2R 19447451 19447472 CCATTTGGTACATCATTCTGTC 59 19447516 19447586 AGAACCGAAGCTTGTAGAG 59 NA Drosophila melanogaster 50 CG3906 FBgn0034871 FBtr0072121 1 1 1 67 2R 19399611 19399629 AATCAGAGGAATGGTGTCC 58 19399562 19399580 GTGATCGGTTCTATTCGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6018 FBgn0034736 FBtr0071835 3 1 1 61 2R 18438971 18438989 GTCCTACTTTGACGATCCC 59 18439014 18439032 TCAGAATGTGAAGGCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4610 FBgn0034735 FBtr0071834 2 1 1 60 2R 18381051 18381069 GAACTGAGGGCTACATAGG 58 18381093 18381111 GGTTCATTTGTGCCTAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4021 FBgn0034659 FBtr0071716 1 1 1 80 2R 17662011 17662100 GAGTACAGCATACAACGTC 57 17662144 17662162 CACAGGTTTCATGTCAGTC 58 NA Drosophila melanogaster 50 CG9865 FBgn0034649 FBtr0071680 2 1 2 167 2R 17557181 17557260 AAGAATCACTACCAGGAGG 57 17556976 17557050 TTATTTGTTCGACTTGCCG 58 NA InUTR Drosophila melanogaster 50 CG4266 FBgn0034598 FBtr0071629,FBtr0113100 1 2 2 80 2R 17054332 17054406 AACGTAATGAAGGGAAATGC 58 17054271 17054289 CTTGTTAAGGTCCATGCTG 58 NA Drosophila melanogaster 50 CG3221 FBgn0034569 FBtr0071550 2 1 1 69 2R 16880287 16880305 TGCTGTTCAGGATCAACTG 59 16880177 16880195 GGAATCATAGACAAACGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11136 FBgn0034540 FBtr0086233 3 1 1 95 2R 16547203 16547289 CTAATAGATAACTCACCGATCC 57 16547345 16547363 TATTTCCAGGGAGGAACTG 58 NA Drosophila melanogaster 50 betaTub56D FBgn0003887 FBtr0086536,FBtr0086538,FBtr0086539,FBtr0086537 3 4 4 68 2R 15335672 15335691 TCTCTACGATATCTGCTTCC 58 15335623 15335641 ACAAGATGGTTCAGGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30127 FBgn0050127 FBtr0086556 1 1 1 100 2R 15216060 15216078 GACCGATGCACAATATGAC 58 15215764 15215782 AGTGGACGTGTTAATGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 ena FBgn0000578 FBtr0086583,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582 3 5 6 115 2R 15048910 15048988 CCATTCTCAAGGTCAATGG 58 15049064 15049085 GTTCTTGACTTTCTGAATCTCC 58 NA Drosophila melanogaster 50 CG15083 FBgn0034399 FBtr0086618 3 1 1 70 2R 14724059 14724078 CTGCTCGTTTACATCATCAC 59 14724186 14724205 TGGAGGTAGAAGGAGTACAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33724 FBgn0053724 FBtr0091722 1 1 1 60 2R 14528063 14528082 TCAATCGCTACTACATTTCC 57 14528103 14528123 GTAGTGGGTAAATTCGATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED9 FBgn0034311 FBtr0086747 2 1 2 105 2R 14054995 14055015 GATTCTGCCGATAATCTACGA 59 14055216 14055286 TTCAAAGATCTTGTGGTTGC 58 NA Drosophila melanogaster 50 Bc FBgn0000165 FBtr0086819 3 1 1 85 2R 13776212 13776307 GGATACGTTGAAGATTCTTCTG 58 13776148 13776166 GATGCCTCAATCATGTTGC 59 NA Drosophila melanogaster 50 CG30325 FBgn0050325 FBtr0086821 2 1 1 60 2R 13766571 13766592 GGTACATAGTAAGCAATCTTCC 58 13766532 13766551 TGGATGGAATGCTAATATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k01209 FBgn0022029 FBtr0086914,FBtr0086912,FBtr0086913,FBtr0086915 3 4 4 96 2R 13311459 13311541 TTCGTCATAGGAATCTGCG 59 13311601 13311619 ACAACAGTGTTACCCATGG 59 NA Drosophila melanogaster 50 CG30460 FBgn0050460 FBtr0087011,FBtr0087009,FBtr0087010,FBtr0113378 2 4 5 108 2R 12959348 12959484 AATCTGAAGACCAAGAGATCC 59 12959260 12959278 AATGGGACATCAGGTTTGG 59 NA Drosophila melanogaster 50 CG6429 FBgn0046999 FBtr0087044 2 1 1 60 2R 12760947 12760967 TATATGGTGAAGTACGGACAG 58 12760987 12761007 CATAATCGTAACAGTCCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 unc-104 FBgn0034155 FBtr0087079 1 1 4 93 2R 12645901 12646139 GATACCTTCTAGGCAACGT 58 12645826 12645845 GCTCTCCACATTATAGTCCG 59 NA Drosophila melanogaster 50 CG34458 FBgn0085487 FBtr0112764 3 1 1 68 2R 12559863 12559881 CAGTTCATCATACATCCGC 58 12559913 12559931 GCTCAACTTAATCAGCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30098 FBgn0050098 FBtr0087168 2 1 1 115 2R 12242539 12242558 GATAACAGATTCGCATGTGG 59 12242324 12242342 GACGAATCGTATTCACCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG33461 FBgn0053461 FBtr0089860 2 1 1 89 2R 11583433 11583451 AGGTTATACGATCCCAAGG 58 11583501 11583584 GATGGGTTGGATATGATATGTG 58 NA Drosophila melanogaster 50 CG12960 FBgn0034023 FBtr0087327 2 1 1 60 2R 11387595 11387613 CTTCTACTCTTGTCGCCTC 59 11387637 11387655 GTCCTTGAAGAAGTGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp50d FBgn0050074 FBtr0087554 2 1 1 170 2R 10260852 10260929 GTCCACATATCACCTTGCA 59 10261063 10261081 CTTCTCCTGATTACCGCAG 59 NA Drosophila melanogaster 50 Ih FBgn0028428 FBtr0100370,FBtr0100369,FBtr0100371 1 3 4 101 2R 10179879 10184219 AGGTCTATTTCCTCAATATGGC 59 10184281 10184299 CTAAGAACTGCAAGCAACC 59 NA Drosophila melanogaster 50 AGO1 FBgn0026611 FBtr0087613,FBtr0087612,FBtr0087614 3 3 3 103 2R 9835755 9835773 TATCAGCTATGCCATACGT 57 9835604 9835688 ACCAGATGATATCTGGCAC 58 NA Drosophila melanogaster 50 Spt-I FBgn0086532 FBtr0087731,FBtr0087729,FBtr0087730 2 3 3 97 2R 9056947 9057022 TATCTTTGTGGATGAGGCTG 59 9057082 9057100 GATCCTCAACGTCATTGTG 58 NA Drosophila melanogaster 50 CG13171 FBgn0033701 FBtr0087995 2 1 1 73 2R 8101580 8101598 ATCGTCAGCTACAAGTCAG 59 8101635 8101653 ATTAGGTTGAAGGTACGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8860 FBgn0033691 FBtr0088011 3 1 1 171 2R 8067275 8067293 CAAGGTTGTCAAATTCGCC 59 8067122 8067141 AATGTGAATCAGCTTGACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13190 FBgn0033662 FBtr0088034 1 1 1 128 2R 7774236 7774255 CCAGCACAATCAATCTTCTG 59 7774346 7774433 GACCCATTCAATGTTGTGC 59 NA Drosophila melanogaster 50 CG9067 FBgn0033605 FBtr0088182 2 1 1 81 2R 7166602 7166620 ATCTCCACTTGCTCTACAC 58 7166475 7166559 CGATCGAACTTCTTTGAAGTC 59 NA Drosophila melanogaster 50 shn FBgn0003396 FBtr0088099,FBtr0088100,FBtr0088101,FBtr0088098 2 4 4 102 2R 7098298 7098383 TGGCAAGCAAGTAAATGTG 58 7098446 7098467 CTTCTTCTGCAACAATATCTCC 59 NA Drosophila melanogaster 50 Or46a FBgn0026388 FBtr0088330 2 1 2 81 2R 6028117 6028137 GAGGATTAGGACACTTAATCC 57 6029494 6029512 GAAGTAGCTGTAGGAGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33757 FBgn0053757 FBtr0091758 3 1 1 77 2R 5342048 5342067 AAACCTTACATCCCAATGAC 57 5341937 5341955 AAATTCGAGGTCGGTACAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13954 FBgn0033405 FBtr0113059 3 1 1 86 2R 5257806 5257824 TTTGTTACTGCTCATGTGC 58 5257636 5257756 TAAATGGCTAACTGGACCA 58 NA Drosophila melanogaster 50 CG13741 FBgn0033374 FBtr0088632 2 1 1 82 2R 4980800 4980976 GACATCTTCAAGAACATCGAC 59 4980738 4980756 CTTCCTCCTTCACGTTCAG 59 NA Drosophila melanogaster 50 CG2127 FBgn0033286 FBtr0088766,FBtr0088765 1 2 2 153 2R 4257181 4257199 ATTGCGATCAGGTATCGAC 59 4257046 4257064 ATGGACCTCATCTTTGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111084 1 1 60 156 2R 3249225 3249243 AAGGACGATTGGTCATCAC 59 3236472 3241080 TTGTACCATCTAAAGGCGG 59 NA Drosophila melanogaster 50 Tsp42Er FBgn0033139 FBtr0089036 3 1 1 87 2R 2953003 2953192 GAGTACCAGACACAGTACC 58 2953241 2953261 CATAACAGCTACTTGGAACAG 58 NA Drosophila melanogaster 50 Tsp42Eb FBgn0042086 FBtr0086177,FBtr0086176 2 2 2 67 2R 2887137 2887155 CAATACGGACCTGATTCGA 59 2887186 2887204 ACATGATGAAGATGCCCAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Eb1 FBgn0027066 FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130 1 4 5 116 2R 2640386 2640404 AATTCAGTGCCAGTAAAGC 58 2640481 2641693 GGGTATAATCTTATCCACAGAC 57 NA Drosophila melanogaster 50 CG9422 FBgn0033092 FBtr0086120,FBtr0086121 1 2 2 99 2R 2579672 2579690 TAGTCACACGCCAAATACC 59 2579808 2579827 AAATCAGTGGACGTATTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 debcl FBgn0029131 FBtr0086108 3 1 1 254 2R 2539505 2539524 GTGTGGTCAGTACATCAGAG 59 2539796 2539814 ACTAGGTTGAGCAACATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17510 FBgn0039969 FBtr0086073,FBtr0086074 2 2 2 100 2R 1491755 1491773 AAATGATCAAGTTCGCTCC 58 1491442 1491460 CAAGTACTAAAGCTGCTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG30438 FBgn0050438 FBtr0086068,FBtr0086067,FBtr0086069,FBtr0086070 3 4 4 84 2R 1436213 1436231 TACTGGACCGAATATGTGC 59 1436278 1436349 AGTAGTATTGCCACCATGTC 59 NA Drosophila melanogaster 50 CG17683 FBgn0040002 FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300 2 4 5 80 2R 19470 19547 GTGTAATCACTTCAGTTGAGG 58 19586 19607 CTAAATCAAGGAGATCGTACTG 58 NA Drosophila melanogaster 50 RpL5 FBgn0064225 FBtr0111129,FBtr0111128,FBtr0111131,FBtr0111130,FBtr0111132 1 5 5 99 2L 22428912 22428930 GTACAGATCGCCTATGCTC 59 22428771 22428849 AGTTGGTCAATCCAACCTG 59 NA Drosophila melanogaster 50 CG1832 FBgn0032979 FBtr0085964,FBtr0100407 1 2 2 129 2L 22168219 22168237 ATACAATTACGCCCTGGTC 59 22168055 22168126 GGATATGGTGTTAGCTGCA 59 NA Drosophila melanogaster 50 His2A:CG33826 FBgn0053826 FBtr0091830 1 1 1 60 2L 21473422 21473441 GAATTATTCCGCGTCATCTG 59 21473464 21473482 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8671 FBgn0032938 FBtr0081484 2 1 3 159 2L 21275797 21281140 GACATGCTAGGAATCCCAG 59 21281263 21281281 AATGAGTCTGGATTGACCC 58 NA Drosophila melanogaster 50 Mtp FBgn0032904 FBtr0081439 2 1 1 89 2L 20919382 20919458 CTTCTCAAACAAACCAACG 57 20919311 20919329 TTTGTGGGAGAGTGTAGAG 58 NA Nonspecific Drosophila melanogaster 50 sick FBgn0085372 FBtr0112547 2 1 3 108 2L 19929343 19950416 CTGTCAACCAATGTAAGTTCAC 59 19950483 19950503 GCTACCCAGATAAATATGCCA 59 NA Drosophila melanogaster 50 l(2)37Cd FBgn0086445 FBtr0081156 1 1 1 108 2L 19127557 19127575 CTATCCATAACCGTGAGGC 59 19127647 19127722 CACAAAGCGTTTCAAAGGT 59 NA Drosophila melanogaster 50 CG10621 FBgn0032726 FBtr0081191 3 1 1 101 2L 18953228 18953246 GCTGATAAAGAACACGGTC 58 18952985 18953163 ATCAAAGGGTATCCCTCCT 59 NA Drosophila melanogaster 50 CG10602 FBgn0032721 FBtr0089317 2 1 4 104 2L 18859028 18859046 CATTTACGATTGCACCTGG 59 18857394 18858961 CGAGTAGAGATCATTGGGTG 59 NA Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0080978,FBtr0080977 2 2 6 144 2L 17394476 17398601 CAATTCGGCTTATACAGATCTC 58 17398705 17398861 ATAATCATAAGATGCGCGAC 58 NA Drosophila melanogaster 50 beat-IIIc FBgn0032629 FBtr0080971,FBtr0080972 2 2 2 90 2L 17191092 17193535 GATTGTTGCGTATCTTCCG 58 17191020 17191040 GCAATTAACCCGAACATAGTC 59 NA Drosophila melanogaster 50 Ca-alpha1D FBgn0001991 FBtr0090006,FBtr0090004,FBtr0090005 1 3 4 81 2L 16186144 16189035 TAACAATGTCTACGCACCC 59 16189080 16189098 CTGATCGTAGGGACTAGCT 59 NA Drosophila melanogaster 50 CG4891 FBgn0028520 FBtr0080815 1 1 1 60 2L 16095417 16095436 CTGGACAATATTCGGAACTC 58 16095458 16095477 TTCCGTATATGTTATCCGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 UK114 FBgn0086691 FBtr0080746 1 1 1 128 2L 15274713 15274731 CTGGAGGCTGTTCTAAAGG 59 15274374 15274623 GAAATCCTTATTGAACACCCG 59 NA Drosophila melanogaster 50 stc FBgn0001978 FBtr0080706,FBtr0080705 3 2 2 139 2L 15117479 15117559 CCATAAGGATAGGTGCTGG 59 15117662 15117680 TCTCTGTATACCACACGGA 59 NA InUTR Drosophila melanogaster 50 CG4218 FBgn0028881 FBtr0080662 1 1 1 110 2L 14547914 14547932 TGGATAAGAAGGCAGAGGT 59 14547751 14547769 GAACGCGTATGATCAACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33643 FBgn0053643 FBtr0091620 2 1 1 60 2L 13531107 13531126 ATTCTATATTGCGTGGACTC 57 13531149 13531167 TGCTGATATGATCAACGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vir-1 FBgn0043841 FBtr0080391,FBtr0080390,FBtr0080389 3 3 4 106 2L 12407726 12409466 CTCCTTCGATGATCTCTTCC 59 12407639 12407657 TAGAATCATCAGAGTCGCC 58 NA Drosophila melanogaster 50 bru-2 FBgn0043904 FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351 1 4 4 129 2L 12385726 12389193 ATTGGAGCTATAAAGGCCC 59 12389286 12389304 CACAGAATGCGTGAATCTG 59 NA Drosophila melanogaster 50 CG12264 FBgn0032393 FBtr0080290 1 1 1 60 2L 12000816 12000834 TCATCAGGAATGGTGATGC 59 12000857 12000876 TAGGCAAACGACAAATTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL9 FBgn0015756 FBtr0080163,FBtr0080164 3 2 2 104 2L 11003234 11003525 AGAACATGATCAAGGGAGTC 59 11003149 11003167 CAATGACCGTGTTGTTCTC 59 NA Drosophila melanogaster 50 CG31711 FBgn0051711 FBtr0079880 3 1 1 110 2L 9926998 9927075 CTCTTCCAGGTCCTAACTG 58 9927148 9927167 AGCTATCTTGATGAGATCCG 58 NA Drosophila melanogaster 50 CG9520 FBgn0032078 FBtr0079790,FBtr0079788,FBtr0079789 1 3 3 128 2L 8945116 8945369 TACTCAATGAAGGTCGCTC 59 8945006 8945026 CATCGTATGGCATGAATTCAC 59 NA Drosophila melanogaster 50 CG7781 FBgn0032021 FBtr0079609 2 1 1 60 2L 8322791 8322809 AGATTACGCAGATCATCGA 58 8322678 8322696 CTAATCACACGGCTATCCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079620,FBtr0079621 3 2 4 91 2L 8245213 8252236 AGATACCAGCTCCTAATGTC 58 8245141 8245159 CGTAATCGTATAAGCCGGA 59 NA Drosophila melanogaster 50 CG5181 FBgn0031909 FBtr0079467 2 1 1 60 2L 7409418 7409436 TTGTCAGACTGACAAAGGG 59 7409376 7409394 CCGGAATAAAGGGTCAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wg FBgn0004009 FBtr0079432 1 1 2 79 2L 7309584 7309602 GACGAGAAACTTCTCGAGG 59 7312846 7312864 CGTAAATGAAGCTCGTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10158 FBgn0031871 FBtr0079366 1 1 1 60 2L 6944784 6944802 CATGGTGAATCGCATTCAG 59 6944742 6944762 GCGATTCTCTTTGAGTATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 xl6 FBgn0028554 FBtr0079368 3 1 1 64 2L 6919905 6919923 ATAGAAAGGTGTACGTGGG 58 6919859 6919878 AAATACATACTCCAGGTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11321 FBgn0031857 FBtr0079385 2 1 2 85 2L 6767009 6767271 TCTTCTGCACAAAGAGTCC 59 6766942 6766960 CCTTCTTGAGTACCTGCTC 59 NA Drosophila melanogaster 50 CG31636 FBgn0051636 FBtr0079324 2 1 1 110 2L 6656928 6657015 AATCAAGAGTCGGATCTCG 58 6656836 6656855 ATATCCTGCAGATTACCACC 58 NA Drosophila melanogaster 50 CG16947 FBgn0031816 FBtr0079271 3 1 1 82 2L 6460475 6460569 GTGAGATTTGGTAAGTACACCT 59 6460414 6460432 CCACATCCATGACAATGGT 59 NA Drosophila melanogaster 50 CG13981 FBgn0031807 FBtr0079279 3 1 1 169 2L 6379274 6379292 CTCTACGTGTAGTGTCGAG 58 6379123 6379141 AATCACCGAATTTGTGGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9147 FBgn0031774 FBtr0079190,FBtr0079189 1 2 2 144 2L 6067221 6067292 GGTACTTGAGAAGCTGGTG 59 6067399 6067418 CTTCTCCAGACGGTATTGAC 59 NA Drosophila melanogaster 50 Cyp4ac1 FBgn0031693 FBtr0079066 1 1 1 91 2L 5264789 5264867 TATATGCGAAACTGCTCTGG 59 5264921 5264939 TTAGAACTTCCTCGATGGC 59 NA Drosophila melanogaster 50 qtc FBgn0028572 FBtr0100263,FBtr0100259 3 2 7 99 2L 5068386 5070107 AACATACGCACCATTTATCG 58 5070169 5070187 AGAAGATAGCGCTCTTGAG 58 NA Drosophila melanogaster 50 Jon25Bi FBgn0020906 FBtr0079054,FBtr0100432 1 2 2 60 2L 4954701 4954719 GCACATGGTTAACAAGGTG 59 4954659 4954678 GTTGTCGTACATGTTGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL40 FBgn0003941 FBtr0077470 3 1 1 64 2L 4228202 4228220 AACATTCAGAAGGAGTCCA 58 4228248 4228266 GAGGGCTCAATGATACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cutlet FBgn0015376 FBtr0077541 3 1 1 114 2L 3708098 3708116 AAGAAGACATCAGGAGCTG 58 3707567 3708020 AGTCCTTAGTTAGCTGCTG 58 NA Drosophila melanogaster 50 CG16712 FBgn0031561 FBtr0077546 3 1 1 73 2L 3696383 3696401 CAGTTATCATCCCGAAACC 57 3696328 3696346 CAAATCGGTTCTCATTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 for FBgn0000721 FBtr0089304,FBtr0089312,FBtr0089310,FBtr0089305 3 4 10 181 2L 3626210 3634252 TTATGTCATGGAAGATGGACG 59 3626049 3626067 TGATGGTCTGAAAGCACTG 59 NA Drosophila melanogaster 50 CG8837 FBgn0031520 FBtr0077583 1 1 1 163 2L 3322424 3322442 TATTCTGCTGGCCATTCAG 59 3322746 3322825 CATTGAATGCCTCTATCATGC 59 NA Drosophila melanogaster 50 CG9663 FBgn0031516 FBtr0077604 1 1 1 80 2L 3301170 3301191 CCATCAAGAAGATCAACATTGG 59 3297553 3301129 CATCCTTGGTTTCCCTCTG 59 NA Drosophila melanogaster 50 CG3332 FBgn0031514 FBtr0077608,FBtr0077609 1 2 2 82 2L 3276462 3276540 GATAACGGGCATGATCCTC 59 3276398 3276417 GATTGTCCAGATCCATCGAG 59 NA Drosophila melanogaster 50 oaf FBgn0011818 FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780 2 4 4 104 2L 2495396 2495415 GTATTACCTCCAACATTGGC 58 2495482 2495582 GGATTTGAACCTCATTGCG 59 NA Drosophila melanogaster 50 Rab5 FBgn0014010 FBtr0077793,FBtr0077798,FBtr0077796,FBtr0077794,FBtr0077797,FBtr0077795 3 6 6 203 2L 2360797 2360985 AACTGCATAAACAAGCCTC 58 2360549 2360569 CGTTCTTAGGTAGTTTCTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 Or22c FBgn0026396 FBtr0077826 1 1 1 87 2L 2055778 2057043 ATCATGTTGAACACGTCGT 59 2057093 2057112 CGAAGCAGTAGAGGAATAGC 59 NA Drosophila melanogaster 50 Got2 FBgn0001125 FBtr0077868,FBtr0077867 1 2 3 149 2L 1986003 1986021 CAAGAAGATCAACTTGGGC 58 1985810 1985828 TTGTAGAACTCGGGAATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15356 FBgn0031377 FBtr0077869 2 1 1 268 2L 1976802 1976917 CAATAGCATAATTGAGCTGC 57 1976553 1976571 TAATTGCTGATTGGACAGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15357 FBgn0040719 FBtr0077871 1 1 1 75 2L 1945393 1945411 ATATGATCCATGTGGCCAG 59 1945336 1945354 TAGAACAAAGTGGATCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4629 FBgn0031299 FBtr0077990,FBtr0077992,FBtr0077991 2 3 3 133 2L 1085630 1085648 TTTACCTGGTCACTGAGTG 58 1085301 1085535 CAGACTGTGCATATGTTTGAC 59 NA Drosophila melanogaster 50 KH1 FBgn0086130 FBtr0078009 3 1 1 60 2L 812368 812386 CTTAGCAAACTGGTGACCA 59 812409 812428 CTAGAACCAGATGACGAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sw FBgn0003654 FBtr0089400,FBtr0089398,FBtr0089405,FBtr0089406,FBtr0089399,FBtr0089407,FBtr0089403,FBtr0089409,FBtr0089402,FBtr0089408,FBtr0089401,FBtr0089397,FBtr0089404 1 13 13 101 X 20100288 20100306 ATATCCACGCACTACAACC 59 20100138 20100223 CTTTGTGTCCTTTAGCGAC 58 NA Nonspecific Drosophila melanogaster 50 CG14207 FBgn0031037 FBtr0074733,FBtr0074734 1 2 2 297 X 19499545 19499565 GGCTAACAAGAGGAATATCCC 59 19504495 19504578 TTTGTTATCGCCCTCATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4678 FBgn0030778 FBtr0074320,FBtr0074319,FBtr0100450 3 3 3 84 X 16603627 16603646 GATTACGCTGGAGATATCCT 58 16603691 16603777 GATAAGTGACAGCTGATTGTC 58 NA Drosophila melanogaster 50 CG32584 FBgn0052584 FBtr0074069,FBtr0074070 2 2 2 67 X 15469568 15469644 AAGTCGTGTCCAATTCCAG 59 15469519 15469537 CTCGATGGTGTTGCTAGAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2533 FBgn0030319 FBtr0073537 2 1 1 60 X 11497543 11497562 AGTCATTCAACTGGAAGAGC 59 11497502 11497520 CTTCTGATCCGTTAGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dlic2 FBgn0030276 FBtr0073444,FBtr0073441,FBtr0073443,FBtr0073442 1 4 4 166 X 11055274 11055358 GTACAGAGACGACATGACG 59 11055488 11055506 AATGGTTTAGCTGCTCCAG 59 NA Drosophila melanogaster 50 ct FBgn0004198 FBtr0071069 1 1 3 124 X 7526283 7526301 GTTATATCGGCTACCGACG 59 7526812 7539814 CGGAATTCTGAATGAGAGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 ogre FBgn0004646 FBtr0071037,FBtr0071036 2 2 2 142 X 6868684 6868780 GGACTGATAGTGTTCCGTG 59 6868560 6868578 TAGATTAGCCACCAGTCAC 58 NA DesignNoJunction Drosophila melanogaster 50 Spat FBgn0014031 FBtr0070913 1 1 1 64 X 6424462 6424549 AGTACAGCGTTGAGATTAGC 59 6424576 6424594 TAAACCGATACGGAAGACG 59 NA DesignNoJunction Drosophila melanogaster 50 ec FBgn0000542 FBtr0112801,FBtr0070606,FBtr0112802 3 3 3 61 X 3749408 3749426 AGATTGCAGAGGAGATTCG 59 3749451 3749469 ATTCAGTGTCTGCTGTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-3385a FBgn0082962 FBtr0113577 3 1 1 62 3R 1422157 1422176 AGGGTTCATGTACAGTATGC 59 1422114 1422132 ACGGCATTGGGTTATATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11333 FBgn0039850 FBtr0085789 3 1 1 266 3R 27289195 27289270 ACTACTAAACTGCTGGCAG 59 27289561 27289580 ATCATTTACCAGGTCGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12883 FBgn0039538 FBtr0085216 3 1 1 65 3R 23505142 23505230 GTTCGAGCAAGAACAAGAC 59 23505259 23505277 CGACAGTCATGTTACTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31076 FBgn0051076 FBtr0085079 3 1 1 61 3R 22814874 22814950 ATAGCAACTACATTGCACAG 58 22814832 22814850 TTGAACCAGTCCATGATCC 59 NA DesignNoJunction Drosophila melanogaster 50 tst FBgn0039117 FBtr0084462 1 1 1 178 3R 19594954 19595038 GAAATAAGCCCTTTGCTGAG 59 19594795 19594813 AATATCGCGCTTGATAGCA 59 NA Drosophila melanogaster 50 RpS3 FBgn0002622 FBtr0084410 1 1 1 65 3R 19185337 19185355 CAACGACTATGTCGAGACC 59 19185384 19185402 ACCTTGATACCAAGCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6660 FBgn0039030 FBtr0084338 2 1 1 70 3R 18749518 18749536 TGAAGACATTGTACGCCTC 59 18749570 18749650 TATGAATACCGTGTCGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gclm FBgn0046114 FBtr0084336 3 1 1 96 3R 18511814 18511832 GAGATAAGTATCGGTGCCA 58 18511736 18511754 GCGTCACACTAAGTATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6439 FBgn0038922 FBtr0084190 1 1 1 73 3R 17843642 17843717 CAAAGTGTGCATTAAGGGC 59 17843587 17843605 TCATGTTAAGGGTCTGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 cic FBgn0028386 FBtr0112787,FBtr0083872 1 2 2 99 3R 16124247 16124328 CTCATCCGTATACGTTGCT 59 16124391 16124409 CTCAAGGTGTAACCTCCTG 59 NA Drosophila melanogaster 50 CG17751 FBgn0038717 FBtr0083778 3 1 1 261 3R 15433424 15433513 GAGTATCACCACAGAGCTG 59 15433738 15433756 TAGGACATACTGGGTGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7217 FBgn0038570 FBtr0100620,FBtr0100619 2 2 2 60 3R 13992107 13992126 AAATCATTTCACTGCGATCC 58 13991872 13992084 GAGTCTCCTACTTTCACCA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083351,FBtr0083347 3 2 6 82 3R 12550978 12550996 GGCATATCAACAGACATGG 58 12484783 12536289 AGACCATTTGTACCTAGCC 58 NA Drosophila melanogaster 50 CG31327 FBgn0051327 FBtr0082904 3 1 1 60 3R 9983634 9983658 GAAGAAAGGGATACCATCTATAGAG 59 9983598 9983616 CCTCCAATAGGGACTATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Past1 FBgn0016693 FBtr0082655,FBtr0082654 3 2 2 79 3R 8529519 8529600 AAGATATCCGGTGCAACTG 59 8529642 8529661 AGTTTCCAGATCTTGCTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6830 FBgn0037934 FBtr0082439 2 1 1 62 3R 7507433 7507451 GAAGTGAGCAAGTTTGACG 59 7507334 7507407 CGTATCCAAGATCTCTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14691 FBgn0037829 FBtr0082314,FBtr0082313 2 2 2 119 3R 6579330 6579348 ATCATGACCTTTGGGAGAC 58 6579165 6579249 CAGAAAGGCAATTGACATCAG 59 NA Drosophila melanogaster 50 Ras85D FBgn0003205 FBtr0082122 1 1 1 86 3R 5337711 5337885 AGTGGTTATCGATGGAGAG 58 5337643 5337661 ATATACTGATCCCGCATGG 58 NA Drosophila melanogaster 50 CG18005 FBgn0037660 FBtr0081995 2 1 1 60 3R 4890279 4890299 CAGATATGAAATCCGGAATCG 58 4890239 4890258 TTGGACTCCTGAATGATACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpA-70 FBgn0010173 FBtr0081867 1 1 1 182 3R 4088630 4088648 GATTACTTCCAGTGCAAGG 58 4088387 4088484 GATGCTCATGTTGATCAGC 58 NA Drosophila melanogaster 50 CG34357 FBgn0085386 FBtr0112568,FBtr0112567 1 2 2 137 3R 360240 363537 ACGTGATGTGGACTTAAGC 59 360121 360140 GTGCCAATGTAGATAGTGGA 59 NA Drosophila melanogaster 50 SPoCk FBgn0052451 FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532 2 4 4 89 3L 22771852 22771870 GAAATGTTGATGCAGAGCG 59 22771923 22776536 GATACCGATGAGATTCGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG5047 FBgn0037008 FBtr0078215 3 1 1 71 3L 20513103 20513121 GGAAATGGGATTCAATGCC 59 20512991 20513068 GGAGGAATCATCAAGAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ccn FBgn0052183 FBtr0075186 3 1 2 115 3L 17723434 17731749 CGATACAGGTTGAGTTGCT 59 17731827 17731846 ATCATCTTCATCATCCTGGG 58 NA Drosophila melanogaster 50 CG12355 FBgn0040805 FBtr0075606 1 1 2 283 3L 15486663 15487040 CGTACAAATGGTTAGATCGC 59 15486261 15486282 CCAAATCAATCCACAAATACCC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 gnu FBgn0001120 FBtr0075697 2 1 1 125 3L 14796263 14796339 CTATAGAGATCCCGCATCC 58 14796156 14796174 CCAAAGAGTCCGTATCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14128 FBgn0036218 FBtr0076036 1 1 1 90 3L 11873176 11873195 GAAATTGTTCAACAGCAAGC 58 11873248 11873323 TATCACACTGTGATGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6321 FBgn0036117 FBtr0076242 1 1 1 85 3L 11053818 11053900 AAGTCCCGTCAATTGTGAG 59 11053751 11053770 CAAAGTCCAACATTGTGGAC 59 NA Drosophila melanogaster 50 CG6409 FBgn0036106 FBtr0076273 3 1 1 62 3L 10874942 10875107 TATTATTCTCTTAGCCCTGGTG 59 10874901 10874919 GTAGACTCCTTGACATCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32036 FBgn0052036 FBtr0114525 1 1 1 71 3L 9481335 9481413 TTTACCACTTGAATGCCGA 59 9481282 9481300 CATAAGGTTCCAGCTCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5280 FBgn0035952 FBtr0076552 2 1 1 89 3L 8982482 8982566 AGGATCTCATAAACGAGCT 57 8982411 8982429 GATACTTCTTACCCTGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7185 FBgn0035872 FBtr0076710 2 1 1 76 3L 8305157 8305385 AGAGCTGTTTCTGATGCAG 59 8305099 8305117 TTGATCAGTGAAATGGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7942 FBgn0035838 FBtr0076686 1 1 2 117 3L 8115214 8115287 AAATACTACAGTGGCGAGC 59 8115368 8115386 AAATATTTGGAGCCACCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG10625 FBgn0035612 FBtr0077140,FBtr0077139 3 2 7 121 3L 5535646 5535664 TAATGAGGGAACCTACACG 58 5534359 5534445 CGTTAATACCGTTATAGCGTC 58 NA Drosophila melanogaster 50 Dhc64C FBgn0010349 FBtr0073360,FBtr0073359 3 2 2 136 3L 4822130 4822148 CTTTACCATCGAGTCAACG 58 4821959 4822030 TCAGTGGAACTCTAAAGCC 58 NA Drosophila melanogaster 50 CG1295 FBgn0035509 FBtr0073222 2 1 1 61 3L 4204788 4205232 ATCTCCAACAGAGTGAAGC 59 4205256 4205275 CACAGATGTAGTTCGATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14968 FBgn0035431 FBtr0073087,FBtr0073090,FBtr0073089,FBtr0073088,FBtr0073086 3 5 5 74 3L 3300774 3300793 CCTCCAACAACAGTAGTACC 59 3300044 3300737 TCACCTTGAACGTTATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL8 FBgn0024939 FBtr0072924,FBtr0072925 1 2 2 185 3L 2588591 2588609 CATCAGCACATTGGTAAGG 58 2588758 2588776 ACCACTACCCAGATCTCAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12099 FBgn0035232 FBtr0072829,FBtr0072828 3 2 2 95 3L 1556339 1556357 CTTGCCTTTGACTTGTCAG 58 1556208 1556282 AGAATGTCCTCCTTAAAGAGC 59 NA Drosophila melanogaster 50 CG9119 FBgn0035189 FBtr0072635 2 1 1 186 3L 1204274 1204560 AGAACGTTATACAGGGTGC 59 1204106 1204124 TTGTACAGCTTATCTCGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RabX6 FBgn0035155 FBtr0072577 3 1 1 94 3L 690715 690733 CTTCATCACGGATACGGAC 59 690791 690958 AGAGTTGGAGCTTGATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mthl10 FBgn0035132 FBtr0072572 1 1 2 80 3L 335162 335255 GAGAAGGACAAATTCGGCT 59 335100 335119 GAAGTACGAGATAAGCTCCG 59 NA Drosophila melanogaster 50 CG11413 FBgn0035022 FBtr0072305 1 1 1 168 2R 20424027 20424045 CATAAAGCCGGTGATTGTG 59 20424174 20424195 CACCTTTCTCTTTCTCTTACTG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4329 FBgn0034745 FBtr0071939,FBtr0071940 1 2 2 107 2R 18498883 18500826 GTTTCTAATCTCTGGCGGA 59 18498794 18498812 GAGATGGTCACGTATTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11291 FBgn0034713 FBtr0071773 1 1 1 60 2R 18099641 18099660 GAAGTCTGGCGAAATAAAGC 59 18099681 18099755 GTCTGATTTAAGCGAGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13502 FBgn0034692 FBtr0113103 2 1 2 63 2R 17974262 17974280 AGATCAAGAATGCCAATCC 57 17974055 17974235 CTATTCAGCTCAAGAGCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG9822 FBgn0034623 FBtr0071612 1 1 1 152 2R 17234695 17234782 TAAGCTGACCAAAGACCTC 58 17234561 17234579 TAGACACTGGCATAGTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Obp56h FBgn0034475 FBtr0086335 3 1 1 60 2R 15703090 15703109 CACCCTATTCTGTATTGCTC 57 15703131 15703208 AAAGTCCGGATTACACTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5-HT1B FBgn0004572 FBtr0086599 3 1 1 85 2R 14914735 14914753 TATTTGGTTGCATCTCTGG 57 14914212 14914688 CCATTACTTATCTCGTAGACG 57 NA Drosophila melanogaster 50 CG4827 FBgn0034225 FBtr0086926 3 1 1 112 2R 13367672 13367690 ATCTCAATGCAGGTGACAC 59 13367766 13367848 GTTGCCCAGAGAAATAGCA 59 NA Drosophila melanogaster 50 Ih FBgn0028428 FBtr0100370,FBtr0100372,FBtr0100369,FBtr0100371 1 4 4 81 2R 10184940 10185102 TCAACTACAACTGCAGATCC 59 10185146 10185164 GTAACTACGTCGGAAACGA 59 NA Drosophila melanogaster 50 mars FBgn0033845 FBtr0087668 3 1 1 79 2R 9391978 9391996 TTTACGCGTTACTCAGTGG 59 9392038 9392114 TCTTCTTTAACCGTCGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30061 FBgn0050061 FBtr0087711 1 1 1 108 2R 9323793 9323811 CATACTATCACGCCAGAGC 59 9322737 9323721 CAATTCTTCGTACTCCGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13169 FBgn0033704 FBtr0087997 1 1 1 127 2R 8128980 8128998 TTTCAAGAACGACTGTCAG 57 8129152 8130051 TTTCAATATCACTTCCGCAG 58 NA Drosophila melanogaster 50 CG10395 FBgn0033019 FBtr0086087 2 1 2 77 2R 1238315 1238393 TGGTGAAAGAAGGTTCTAAGG 59 1238430 1238450 GAAGTTCTTTAGGTCTCAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 d4 FBgn0033015 FBtr0086083,FBtr0111115,FBtr0086082 3 3 3 113 2R 1182527 1182545 CAAACGTAGAGGGTACTCC 59 1182673 1182692 TATTTGCACTATTTCCACCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12547 FBgn0040521 FBtr0111273 2 1 1 64 2R 674683 674704 GCAAAGCTTCTATGATAGATGG 58 674578 674659 ATTAAGTGGGTTTCGATCTC 57 NA DesignNoJunction Drosophila melanogaster 50 Gr39a FBgn0041244 FBtr0081511 2 1 4 94 2L 21297160 21297178 ATGTTACGCACTAATGGCA 59 21297329 21297457 ATCATTCTATCCAACCCAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10383 FBgn0032699 FBtr0089628 1 1 1 85 2L 18692905 18692983 GAACAGGATCCCATTGAGG 59 18692838 18692856 TTTAGTAAGTCCGTGTCGG 59 NA Drosophila melanogaster 50 Mst36Fa FBgn0086681 FBtr0081074 3 1 1 190 2L 18675956 18676025 GTTCGAAAGGAAATCAGCC 59 18675784 18675802 ACTCATACATGAGTCCGGA 59 NA DesignNoJunction Drosophila melanogaster 50 Sos FBgn0001965 FBtr0080541 3 1 1 99 2L 13816692 13816774 TCAGAGAAAGAACGAGCAG 59 13816837 13816855 GTCGTTGGGTACACTAAGG 59 NA Drosophila melanogaster 50 CG14930 FBgn0032366 FBtr0080245 3 1 1 143 2L 11520511 11520532 CATCAATAGATCCTATAGCTCG 57 11520389 11520408 GTCGATAAATTGACAGTTGC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG6206 FBgn0027611 FBtr0080031,FBtr0080030 3 2 2 94 2L 10460436 10460454 CTCTACAATCCACTGGCTC 59 10460510 10460590 AGAGTAACACCCTTGTTATCG 59 NA Drosophila melanogaster 50 nmd FBgn0005322 FBtr0080065 2 1 1 107 2L 10303737 10303757 CGCTGATCACATATTATTCGG 59 10303594 10303668 CTAGCCTCTTAAGCTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13121 FBgn0032145 FBtr0079922 1 1 1 109 2L 9770967 9770985 GGAGGAGTCCTACTATCGG 59 9770598 9770895 AGATAGCTTTGGCATATCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf11 FBgn0011291 FBtr0079924 1 1 1 281 2L 9763152 9763170 ACGAAATCCTCTTTCCCAC 59 9762827 9762907 AGTTGGAAACGAGAACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr30B FBgn0032125 FBtr0079831 1 1 1 243 2L 9542958 9543047 AGTTACCTATTTGTTGTGCC 58 9543253 9543271 GAAACCGTTGTGATCATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13392 FBgn0032033 FBtr0079720 1 1 1 144 2L 8382517 8382600 AATAGGCGAAGTATGGTCG 59 8382391 8382409 GACAATCGGGAGGTAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567,FBtr0079574 1 9 9 83 2L 8107166 8107248 GACCTTTGCCAATGTAACG 59 8107295 8107313 AGAATGGCGTTAGGAACAC 59 NA Drosophila melanogaster 50 CG7211 FBgn0031941 FBtr0079481 1 1 1 60 2L 7747624 7747643 TAAAGAAGTCCGGACTTTCC 59 7747666 7747684 GTGACCAGAACATTTAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pvf2 FBgn0031888 FBtr0079423 3 1 1 125 2L 7070929 7074254 AATAATCGTACCAGGGAGC 58 7070822 7070841 GTAGAACGTGTTCGTTTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31637 FBgn0051637 FBtr0079287 3 1 1 81 2L 6525813 6525895 CAGAAGAGATCAAGCAAATCC 59 6525938 6525956 TTGTTGAAGTTCTCGATGC 58 NA Drosophila melanogaster 50 CG13993 FBgn0031776 FBtr0079191 1 1 1 110 2L 6069482 6069570 GACACAAGAGTTTACCAGTC 58 6069643 6069661 CAGTTCTATCGCTTTGTCG 58 NA Drosophila melanogaster 50 mtm FBgn0025742 FBtr0079223 2 1 1 67 2L 6035207 6035280 AAGATCTCAAGCACAAGAC 57 6035158 6035176 ATTCAAATACTGGTCCAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15628 FBgn0031632 FBtr0077384 2 1 1 74 2L 4825640 4825658 CGTTTGGTGCATGAATCAG 59 4825696 4826449 AAACTTTAACGATTCCGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31698 FBgn0051698 FBtr0077612 2 1 1 80 2L 3173531 3173551 TCTACTTCGTATGCAAGTCAG 59 3173404 3173489 AAAGAAGACGGGCATATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4238 FBgn0031384 FBtr0113013,FBtr0077820,FBtr0113014 1 3 3 119 2L 2028919 2028938 GAAAGTGTCTGTTTGAGAGC 59 2029017 2029101 GTTCGAAGTACTTGTAATGCAC 59 NA Drosophila melanogaster 50 CG17712 FBgn0027597 FBtr0077903 3 1 1 61 2L 1751901 1751919 TGAAAGAGGCGAAAGAGAC 59 1751858 1751877 GTCGATTACGTTCGTATGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13693 FBgn0031235 FBtr0078126 2 1 1 245 2L 233136 233217 GCGGATATTGAAAGAAATGC 57 233423 233443 GGTTAACTTCATAGTTCCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9723 FBgn0030768 FBtr0074376 1 1 1 62 X 16548650 16548668 ATTATTCCCAGTACGGTGG 58 16548606 16548624 ATTGCTTGTCCTTGTAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dsp1 FBgn0011764 FBtr0089259,FBtr0089261,FBtr0089260 2 3 5 242 X 16228439 16230334 AAATACAGCAATTGGCTGC 59 16230540 16230558 GATAATCATAGCCCGTGGT 58 NA DesignRelaxed Drosophila melanogaster 50 l(1)G0136 FBgn0026666 FBtr0074084 3 1 1 97 X 15629320 15629338 CTTCATCGACAAGAAAGCG 59 15629465 15629484 TGTTCGGATTGTTAAACACG 59 NA DesignNoJunction Drosophila melanogaster 50 Tango4 FBgn0030365 FBtr0073622 2 1 1 62 X 11916286 11916304 CATAGTCCTCCATCCATCG 58 11916330 11916348 CACTGCTTGATGTTATCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lz FBgn0002576 FBtr0112814 1 1 2 162 X 9182570 9182588 CAATGATCTGCGTTTCGTG 59 9188048 9196016 CATCATTTCGGCTGTTGTC 59 NA Nonspecific Drosophila melanogaster 50 ND75 FBgn0017566 FBtr0071180,FBtr0071181 1 2 2 171 X 8143115 8143194 GCACTATTAGCAAATCCATCG 59 8142964 8142982 TAGATAGCCACACTCTGCT 59 NA Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 2 12 15 239 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978621 6978640 AATTGATCTACCTCTGTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070738,FBtr0070739,FBtr0070740,FBtr0100408 1 4 4 214 X 4962802 4962820 CAGTATGCCTACAAGGAGC 59 4963094 4963112 TAATTGTGGACTGGCATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6986 FBgn0029723 FBtr0100551,FBtr0100552,FBtr0070714,FBtr0070713 3 4 4 92 X 4619144 4619162 TCCAGCACTATGACTATCC 57 4619218 4620277 AGATGTAACCGAAACTGTC 57 NA Drosophila melanogaster 50 trol FBgn0001402 FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964 2 4 7 81 X 2386428 2386447 ATAGTAATGATCGCAGACCG 59 2384863 2386384 CCAACGTCGTTATTCTCCT 59 NA Drosophila melanogaster 50 csw FBgn0000382 FBtr0070378,FBtr0070379,FBtr0070380 1 3 3 84 X 2005097 2005115 ATATACAGACCCTGATCGC 58 2005161 2005246 CCCGTGTACTTTATATTGGTG 58 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 2 7 7 83 4 208987 209060 CGGATCATAGACTTACGGA 57 208922 208940 CGAAGCATGGTTTAGTCAG 58 NA Drosophila melanogaster 50 CG1499 FBgn0039852 FBtr0085791,FBtr0085792 1 2 2 84 3R 27386436 27386454 AGTGGATTCGGTTTACCAG 59 27386501 27386586 GTAAGAGTGGCATCTGTAGG 59 NA Drosophila melanogaster 50 BG642167 FBgn0083939 FBtr0110770 1 1 1 68 3R 21632400 21632418 GAAACATCCGATCTCTGGA 58 21632450 21632468 ATTTATCGAGGCTTGAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6178 FBgn0039156 FBtr0084550 1 1 1 109 3R 19979390 19979409 AGGACGTGTCTCTTATTGTG 59 19979481 19979555 AGTGGGTTGGATTTGTGAG 59 NA Drosophila melanogaster 50 CG5991 FBgn0026576 FBtr0084537,FBtr0084536,FBtr0084538 3 3 3 60 3R 19878273 19878292 TACGGATGGTATTCCAACAC 59 19878315 19878333 CATACTCCGGATACATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 KrT95D FBgn0020647 FBtr0084508,FBtr0084507,FBtr0084506 3 3 3 106 3R 19824628 19824646 GGATAAGGAGCGTGATCTC 59 19824479 19824558 CATCAATGTACACTCGCAG 58 NA Drosophila melanogaster 50 hh FBgn0004644 FBtr0084404,FBtr0100506 1 2 2 120 3R 18955125 18958733 GTCAAGTCAGATTCGTCGA 59 18955023 18955042 AAACACGATCTCCGATAGAG 58 NA Drosophila melanogaster 50 CG14907 FBgn0038455 FBtr0113242,FBtr0083354 1 2 2 60 3R 12477487 12477506 CTAGAGATCCCAAGGTTGAG 58 12477446 12477464 CTGGCGTACATAAGTTCGT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204 3 6 8 198 3R 11782022 11785052 GACTGATGAGGAACAATGG 57 11785214 11785232 CTCCCAATCGTTGTTAGTC 57 NA Drosophila melanogaster 50 Octbeta3R FBgn0053959 FBtr0099998 2 1 5 148 3R 8344783 8344895 ATCTTTAAGGAGGCGATTCG 59 8338728 8338865 AGCGATGTGATGACATACC 59 NA Drosophila melanogaster 50 Alh FBgn0037471 FBtr0113199,FBtr0081615 2 2 6 130 3R 2921228 2921310 GAAGATGATCTCAGCAGCA 59 2921116 2921134 TTGTCGTTCTTATGCAACG 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 kkv FBgn0001311 FBtr0078798,FBtr0078800,FBtr0078799 3 3 3 99 3R 1204859 1204877 GTAAGAATTCGGTGATGGC 58 1204709 1204796 TTGTTGTTAATCGGTGCTC 58 NA DesignRelaxed Drosophila melanogaster 50 snoRNA:Or-CD11 FBgn0086082 FBtr0114358 2 1 1 62 3L 20446835 20446854 AAATGTGAAGAGCATTCCAC 58 20446879 20446897 ACGGAATAGTCAAGCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32450 FBgn0052450 FBtr0078501 2 1 1 62 3L 22323189 22323207 CTGTTTGTGGTAGTTCCCT 59 22323233 22323251 CCGCACATATTTGTACACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5161 FBgn0036573 FBtr0075491 3 1 1 61 3L 16124273 16124291 CCTTCTATCGCATCAACAC 58 16124230 16124250 AAAGATCTCCGACTTCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cp309 FBgn0086690 FBtr0099992 1 1 2 84 3L 15074253 15074442 TGACTATAAGCCTGCAACC 59 15074187 15074205 AATAAGGGAGGTATTCGCG 59 NA Drosophila melanogaster 50 Tsp68C FBgn0043550 FBtr0075751,FBtr0075752 1 2 2 60 3L 13837545 13837563 GAAGTTCCTTGGACTACGA 58 13837586 13837605 CAATTCCTTTGTCCATAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6327 FBgn0036115 FBtr0076245,FBtr0076244,FBtr0076243,FBtr0076246 1 4 4 106 3L 11030799 11030817 GATTGCCCTCTACACTCTG 59 11030645 11030729 ATTGGGCCAACTTATCCTC 59 NA Drosophila melanogaster 50 ect FBgn0000451 FBtr0076305,FBtr0076306,FBtr0076307 1 3 3 60 3L 10188942 10188962 TGATGACGATTATCTGGACAG 59 10188793 10188921 ATCCTCATCTTCATCATCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG33696 FBgn0053696 FBtr0091684 3 1 1 151 3L 9646634 9646652 TTCACGCTTTCTTCATCAC 58 9646883 9651912 GTATTCAGAAACTGTCACTTGG 59 NA Drosophila melanogaster 50 CG10274 FBgn0035690 FBtr0113149,FBtr0077018 3 2 2 60 3L 6173650 6173668 GAAGCACATGTACAAGCAC 59 6173608 6173626 TTTGCCACAGATGTTACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10479 FBgn0035656 FBtr0077070 2 1 1 145 3L 5962031 5962050 ATAAACAGGAACCGATCCAG 59 5961685 5961925 GAGAAGGTCCTCATCATAGTC 59 NA Drosophila melanogaster 50 CG14998 FBgn0035500 FBtr0073267,FBtr0073265,FBtr0073268,FBtr0113135,FBtr0073269,FBtr0073266 1 6 6 107 3L 4126918 4126996 TCTCGAGGAGATTAACAAACTC 59 4126832 4126851 GACATAAGGTTTGCAGTTCG 59 NA Drosophila melanogaster 50 zormin FBgn0052311 FBtr0110857 1 1 4 97 3L 2119118 2125246 TCAATACGATCAAGGCACTC 59 2119040 2119058 TATTGACGCCATTACCCAG 59 NA Drosophila melanogaster 50 p130CAS FBgn0035101 FBtr0113120,FBtr0072474 1 2 3 101 3L 168759 168777 CAAACTCAAATTCGGGAGG 58 168842 172070 GTGTGATTACCTTTGTCGG 58 NA Drosophila melanogaster 50 CG2765 FBgn0035087 FBtr0113119,FBtr0113118,FBtr0072408 3 3 3 212 2R 20849156 20849174 TATGGACGACACCATACTG 58 20848860 20848879 GAGTTCAGCATGTTGTACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG30222 FBgn0050222 FBtr0071655,FBtr0071656 1 2 2 104 2R 17470719 17470737 CTTAGACGCTTTGATGAGC 58 17471237 17471312 ATCGAAGTCAGTGATTCGG 59 NA Drosophila melanogaster 50 aPKC FBgn0022131 FBtr0110996,FBtr0110998,FBtr0110999,FBtr0110997,FBtr0110995,FBtr0087426 3 6 6 85 2R 10835448 10835466 TGCTCTATGAGATGTTGGC 59 10835324 10835401 CAGATAGTCCTCAGTGTTCTG 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 2 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421092 TAGTAAGGTAGCAAAGTAGGG 58 NA Drosophila melanogaster 50 CG34363 FBgn0085392 FBtr0112584,FBtr0112585 1 2 2 80 2R 6226735 6226815 GCTATAAGGGCAACATCTG 57 6226673 6226692 TAAGTGCAAAGGGTATTGTC 57 NA Drosophila melanogaster 50 14-3-3zeta FBgn0004907 FBtr0100183,FBtr0088412,FBtr0088418,FBtr0088417,FBtr0088416,FBtr0088419,FBtr0088413,FBtr0100182,FBtr0088415,FBtr0088414 2 10 10 71 2R 5991854 5991872 TGTCGACAGTCGATAAGGA 59 5991904 5992232 TATCATCGTAACGTTCTGACTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG2264 FBgn0033478 FBtr0088400,FBtr0088399,FBtr0088401,FBtr0088402 1 4 5 152 2R 5948857 5949128 GAGTTTCACAACCGTAGTG 58 5949244 5949262 GTGTGGATTAACTCCAGTG 57 NA Drosophila melanogaster 50 PRL-1 FBgn0024734 FBtr0080857,FBtr0080856 3 2 2 90 2L 16248848 16248866 CGACCATCAGACATAACCA 59 16248714 16248732 TATAGCTAGGTTCGCACAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7311 FBgn0028848 FBtr0080530,FBtr0080529 1 2 2 60 2L 13709333 13709351 CTGGAAACCCAAGTATCCC 59 13709373 13709393 GACTCAACAAACCGTAATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6415 FBgn0032287 FBtr0080108 2 1 1 60 2L 10704293 10704312 TTCATGAGTTCCTTCGTCAC 59 10704335 10704353 CACATCTCGTGATCCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18284 FBgn0043825 FBtr0080100 2 1 1 92 2L 10645233 10645251 TCTGCACCAAACTTATCCC 59 10645304 10645379 GGGATAGTGTCATATTGAAGCT 59 NA Drosophila melanogaster 50 Pp2A-29B FBgn0005776 FBtr0005088,FBtr0100533 2 2 2 96 2L 8367857 8367934 GATGATGTAGAGCACCTGG 59 8367994 8368012 GATCAACAAACTTCTCGGC 59 NA Drosophila melanogaster 50 CG11266 FBgn0031883 FBtr0089634,FBtr0089639,FBtr0089637,FBtr0089636,FBtr0089640,FBtr0089635,FBtr0089638 3 7 7 117 2L 7036715 7036823 TTATCACGTACCACAATGCT 59 7036903 7036921 GTATTCATGTCCAGTCGCT 59 NA Drosophila melanogaster 50 Gr22e FBgn0045497 FBtr0077888 2 1 1 60 2L 1784330 1784348 GCATTCACGACATTCAGAG 58 1784371 1784390 TTCCAGAAACTTCTCAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32495 FBgn0052495 FBtr0089800,FBtr0089799,FBtr0089801 1 3 3 82 X 17798672 17798835 ATAAGCTGCACAATATGCC 58 17798881 17798899 CTTTGCATAGATGTCCCAC 58 NA Nonspecific Drosophila melanogaster 50 Ag5r2 FBgn0020508 FBtr0073938 1 1 1 151 X 14677279 14677539 ATCCGGATATAACGGACCT 59 14677146 14677164 GTCCGATCATATTGGTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9034 FBgn0040931 FBtr0071343 3 1 1 155 X 9053867 9053943 TTTGTGTACCAAGATGTCC 57 9053730 9053748 TCCTTGGCATAGTAGTTGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG5467 FBgn0039433 FBtr0085028 2 1 1 240 3R 22423839 22424310 TGATTAATGCTGAGAAGCG 57 22424909 22424927 ACAATCTTCTCATCGAGGA 57 NA DesignNoJunction Drosophila melanogaster 50 svp FBgn0003651 FBtr0082564,FBtr0082563 3 2 3 295 3R 8107955 8115932 ACAATTTACCTGCGAAGGT 59 8119840 8119858 TGTAGGAACTGAGGTACGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG6830 FBgn0037934 FBtr0082439 1 1 1 61 3R 7507433 7507451 GAAGTGAGCAAGTTTGACG 59 7507335 7507408 GTATCCAAGATCTCTGGCA 58 NA DesignNoJunction Drosophila melanogaster 50 Mst77F FBgn0000093 FBtr0078270 2 1 1 112 3L 20810784 20810802 CTTTAAGAAGCGCTACGGA 59 20810628 20810708 ATGGTTCCGCAGAATACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9674 FBgn0036663 FBtr0075341,FBtr0075344 3 2 4 87 3L 16785600 16785618 TAAGAATGCCGGATTACCC 59 16784781 16785549 AACAATCACACGTGATCGT 59 NA Drosophila melanogaster 50 CG10332 FBgn0034881 FBtr0072109 1 1 1 71 2R 19489124 19489142 AGTTATCTGGTTGTCCTGC 59 19489003 19489089 TTCTGTTTGCAGATCCTCC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Xbp1 FBgn0021872 FBtr0071571,FBtr0071572 1 2 2 78 2R 17031640 17031722 AAGAAGCTAAAGAACCGTG 57 17031764 17031782 TCTCGTAGTCCATCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6984 FBgn0034191 FBtr0086979 1 1 1 130 2R 12979979 12980054 CAAGTTCTCTACTCCAGGG 58 12980148 12980166 CTTCTTCACCAGTAACGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ca-beta FBgn0015608 FBtr0080218,FBtr0080217,FBtr0080220,FBtr0080219 1 4 4 62 2L 11165965 11166043 AGTTGGATAAAGCGAGGAG 59 11165921 11165939 CATCGTATGCTACGTTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG7224 FBgn0031971 FBtr0079532,FBtr0100151 2 2 2 157 2L 7999167 7999266 GTGAGCTATCTATCGACGA 58 7999387 7999405 GAGAATTCATCCAGCTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me28S-G2017 FBgn0086057 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-A2634c FBgn0082944 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR32449 FBgn0052449 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:G3:57BCa FBgn0011871 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:H:56E FBgn0011879 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me18S-C1831 FBgn0065053 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 stnA FBgn0016976 FBtr0111139,FBtr0111140 2 2 2 60 X 22386604 22386682 AGCACTTCAGATATGGTTCG 59 22386563 22386581 ATACCCTTGATCTTGCCTG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 car FBgn0000257 FBtr0074727,FBtr0074728 1 2 2 62 X 19461128 19461146 GATGAGTTCTACGGCATCC 59 19461172 19461190 GTCAGAGGGAAAGTTCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8188 FBgn0030863 FBtr0074476,FBtr0100463 3 2 2 169 X 17595343 17595361 TGATGACAGAGATCCATGC 59 17595052 17595070 TAATCTCTTCAGCATGCGT 59 NA DesignNoJunction Drosophila melanogaster 50 ppk23 FBgn0030844 FBtr0074491 3 1 3 102 X 17461885 17461903 CCTACACATTCTCCTCCTG 58 17461726 17461820 ATAGGCACATTAGGTATGGG 58 NA Drosophila melanogaster 50 CG12993 FBgn0030840 FBtr0074437 1 1 1 117 X 17341272 17341290 CTTATACCTACTGCGGACG 59 17341079 17341191 TAGCTTCTGGCTAATTCGG 59 NA Drosophila melanogaster 50 CG9782 FBgn0030763 FBtr0074288 1 1 1 149 X 16510175 16510193 GAGTATGACGAGGAAACCG 59 16510044 16510062 GAGGAAGTCATCGTTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dsp1 FBgn0011764 FBtr0089259,FBtr0089263,FBtr0089261,FBtr0089262,FBtr0089260 3 5 5 79 X 16230977 16230996 AAGAAACATCCCGATGAGAC 59 16231038 16231132 TTGTCCACCATTGTCTTCC 59 NA DesignRelaxed Drosophila melanogaster 50 eas FBgn0000536 FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211 2 5 5 112 X 16178691 16178711 CTCTATGTCCAGGTCAATCAG 59 16178784 16179063 AATGCATAGCCTACGTAGTC 59 NA Drosophila melanogaster 50 CG8974 FBgn0030693 FBtr0074187,FBtr0074189,FBtr0074185,FBtr0074188,FBtr0074186 2 5 5 211 X 15688455 15688537 GATCCACGTAACAAAGTTCC 58 15688198 15688216 TGTTCATCCTCGTATTGCC 59 NA DesignRelaxed Drosophila melanogaster 50 Rhp FBgn0026374 FBtr0074096,FBtr0074095 3 2 2 84 X 15685124 15685279 TCTATCAGAGCGAAAGTCAC 59 15685324 15685344 GGTTCCATGAAATTGATCTCC 59 NA Drosophila melanogaster 50 CG8260 FBgn0030684 FBtr0074089 2 1 2 124 X 15651251 15651353 TATCTATACGACGTTCGAGC 58 15651440 15651458 AATGTCACTAAATTCGGGC 58 NA Drosophila melanogaster 50 Graf FBgn0030685 FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197 2 6 6 81 X 15646356 15646434 TAACCAATGTTCGTTACTCC 57 15646294 15646312 TAGTTCTCCGGAATGAGTC 58 NA Drosophila melanogaster 50 CG14406 FBgn0030595 FBtr0073977 2 1 1 80 X 14804732 14804750 GATGTGATAACAGGAACGG 57 14804670 14804689 GATGGGCAATTGATCATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0007 FBgn0026713 FBtr0073900,FBtr0073901 1 2 2 96 X 14117987 14118070 CAGAACAATTACAGTTCGACC 59 14118128 14118146 TGATGTCCTTAAGCTGCTG 59 NA Drosophila melanogaster 50 CG11164 FBgn0030507 FBtr0073809 1 1 1 60 X 13562864 13562882 TATGTGGGACGGTATTTGG 59 13562906 13562924 GAATGTGCAGGTAACTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15745 FBgn0030469 FBtr0073758,FBtr0073759 1 2 2 60 X 13200444 13200464 GACTATTCGGATGACATAACC 57 13200483 13200504 GACGAAAGTATTCCATTTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3812 FBgn0030421 FBtr0073689,FBtr0073688 2 2 2 233 X 12663817 12663835 CATCATTGTGGCCAATCAC 59 12664122 12664140 CACAGTTTGATACGTTGCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG11727 FBgn0030299 FBtr0073546 2 1 2 138 X 11329586 11329605 GAAATTTCCCGTCTTGAGAC 58 11328832 11329418 TTATTGGCGTGGGATACTC 59 NA Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073487,FBtr0073485,FBtr0073489 2 3 12 195 X 11284563 11289280 ATCTGGATTCGGTGAATGG 59 11289438 11289457 ATATCGTTGATGCTCAGACG 59 NA Drosophila melanogaster 50 CG1961 FBgn0030264 FBtr0073432 3 1 1 159 X 10999483 11000535 CAACAGAGGCAATCTTACG 58 11000658 11000676 ATTGATGTACGATCCGGTC 59 NA Drosophila melanogaster 50 CG1961 FBgn0030264 FBtr0073432 1 1 1 96 X 10999408 10999427 GGCTTCATATGAAGAGAAGG 57 10999486 11000538 GTACGTAAGATTGCCTCTG 57 NA Drosophila melanogaster 50 CG1582 FBgn0030246 FBtr0073403 1 1 1 83 X 10790894 10790977 CGATACGCGGAATATAGCA 59 10790829 10790847 GGATTCGATCAGTTCTGGA 58 NA Drosophila melanogaster 50 CG32669 FBgn0052669 FBtr0073412 2 1 1 60 X 10738097 10738115 ATTCTGTGCCTGCTTAGTC 59 10738055 10738074 GGTAGTACCAGTAGATGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32683 FBgn0052683 FBtr0071463 2 1 1 156 X 10346314 10346332 GAAGTGGAGATGGATGTCG 59 10321537 10346194 CACGATGAGTGGATCTGTC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG7033 FBgn0030086 FBtr0071291,FBtr0071289 1 2 2 122 X 8985099 8985117 CGAGCTCAAGTCCATACAG 59 8985203 8985453 GCATTCTCAATACGCTGTG 59 NA Drosophila melanogaster 50 CG33181 FBgn0053181 FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451 3 5 5 83 X 8409419 8409506 TCAAAGGAGTTCCCTATGC 58 8409553 8409571 CAGCAGCAAAGATGAACAG 59 NA Drosophila melanogaster 50 CG2258 FBgn0029997 FBtr0071109,FBtr0071111,FBtr0071110 1 3 3 80 X 7991099 7991205 CAATCGAGAGGATGATCCC 59 7991037 7991056 ATGTCGATAAACATTCGCAG 58 NA Drosophila melanogaster 50 COQ7 FBgn0029502 FBtr0070963 3 1 1 152 X 6666725 6666743 GTCAGATAATGGAGGCACC 59 6666921 6666940 CAAACTTGATTACCTCGGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4095 FBgn0029890 FBtr0070955 3 1 1 136 X 6577282 6577303 CGAGCTAAATGTATTCAAACCC 59 6577460 6577478 TGATCTTGTCGATCCTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 APC7 FBgn0029879 FBtr0070947,FBtr0070946 3 2 2 84 X 6492970 6492988 ACTATTACAAGGCATTGCG 58 6493106 6493124 GATTCATCGTCGGATTTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG34417 FBgn0085446 FBtr0112705,FBtr0112704 1 2 5 84 X 6481127 6482107 AGGAATATGAGAACGTCCA 57 6482155 6482173 AAGAAATGGTGTATCAGCG 57 NA Drosophila melanogaster 50 CG3823 FBgn0029863 FBtr0070900 1 1 1 103 X 6200318 6200425 GGAGCAGAGGGATTATCTG 58 6200492 6200510 GTAGACCTTCTGTGACTCC 58 NA Drosophila melanogaster 50 Lag1 FBgn0040918 FBtr0070937,FBtr0070938 1 2 2 121 X 6152768 6152788 AGCCTACTACATCTTCAACTC 58 6152524 6152685 GTATGTCACCGGACATCAG 59 NA Drosophila melanogaster 50 CG4165 FBgn0029763 FBtr0070774,FBtr0070772,FBtr0070773,FBtr0070775 1 4 4 80 X 5317037 5317156 TAGAACACTACCAGACACC 57 5317200 5317218 ACTCATAGCACCAGATGTC 58 NA Drosophila melanogaster 50 SK FBgn0029761 FBtr0070769 2 1 7 101 X 5292703 5292721 TTTACATCCTGACACAGCT 58 5292785 5293573 GGAACACTTCTAGAATGTGG 57 NA Drosophila melanogaster 50 CG4198 FBgn0029753 FBtr0070750 2 1 1 60 X 5208750 5208769 CATGAGGTCTCAATGATGCT 59 5208792 5208810 CATAGTCGGTTGGGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32767 FBgn0052767 FBtr0070761,FBtr0070760 1 2 2 103 X 4972049 4972158 AACAGGTGTTATTTCGCCA 59 4971964 4971982 CTATCGATAGTGGCACACC 59 NA Nonspecific Drosophila melanogaster 50 CG6986 FBgn0029723 FBtr0100551,FBtr0100552,FBtr0070714,FBtr0070713 2 4 4 92 X 4619145 4619163 CCAGCACTATGACTATCCC 58 4619218 4620278 GAGATGTAACCGAAACTGTC 58 NA Drosophila melanogaster 50 CG2982 FBgn0029704 FBtr0070649,FBtr0070648 3 2 2 60 X 4214436 4214454 ACGAAATACTGATTCGCCA 59 4214478 4214496 TTGTAAGTGGTCACATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2930 FBgn0028491 FBtr0070608 1 1 3 169 X 3771338 3771359 GCTCATCCTAATCTTTATACCG 58 3771489 3773055 TCAATGGGTAAGTGTGCTC 59 NA DesignRelaxed Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514 2 9 14 87 X 3215176 3215194 TCTATATCGCTCCGATTCG 58 3215244 3219972 CTGTTCTTTAAACCTTTCGC 57 NA Drosophila melanogaster 50 CG3939 FBgn0040396 FBtr0070508 3 1 1 68 X 3069646 3069664 GAGAAAGACAAGGACGGAC 59 3069970 3069989 GGCACTCATGATAGTTTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dwg FBgn0000520 FBtr0070487 1 1 1 133 X 2622876 2622894 AGATGATTGTGATACCCGC 59 2623053 2623071 CAGGAAGTCCTCATCTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 HLH3B FBgn0011276 FBtr0070506 1 1 1 87 X 2575464 2575482 GTCCATATCCGATGGAGAC 59 2575395 2575413 GTAATCGCGAAGATCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 egh FBgn0001404 FBtr0070440,FBtr0070439 1 2 2 95 X 2490992 2491010 TTCAAGCTCTTTCACAAGC 58 2491380 2491398 GATTCCGTTGTCAAAGGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG3071 FBgn0023527 FBtr0070398 3 1 1 60 X 2158012 2158031 GAAAGTACTTCGTGAGTACG 58 2158053 2158072 TTGATGGTGTGATCAACCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or2a FBgn0023523 FBtr0070397 3 1 1 60 X 2140947 2140965 AAAGTCCAATAAAGGGCAG 57 2140989 2141007 GATGAGTTCCTGGTACACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab27 FBgn0025382 FBtr0070294 1 1 2 77 X 1368831 1368849 CGACTACGATTACCTGCTC 59 1368772 1368790 GTGTACTGGTAGAGGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0110928,FBtr0070176,FBtr0070178,FBtr0070177 1 4 5 148 X 938610 938688 AATCTGGATAAGGCTCCTG 58 938800 938818 CTATCTGGCATACCTGGTC 58 NA InUTR Drosophila melanogaster 50 MED22 FBgn0040339 FBtr0070165 3 1 1 135 X 822447 822465 ACAGCCAGATTTCGAAGAC 59 822627 822646 TCGTTGAGGATTAGGTACTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7359 FBgn0025617 FBtr0070141 2 1 1 87 X 700766 701012 ACCTATTCCACTACCTAATCG 58 701061 701079 AGGTAATTGAAGGCCAGTC 59 NA Drosophila melanogaster 50 svr FBgn0004648 FBtr0070083,FBtr0070087,FBtr0070084,FBtr0070081,FBtr0070082 1 5 7 104 X 396960 398709 AACTTTGATGGCAACTTCC 58 398777 398795 GTGTTCGTATTTAGTCGGG 57 NA Drosophila melanogaster 50 CR41619 FBgn0085825 FBtr0114283 1 1 1 60 U 10029971 10029989 CGTGCAAATCGATTGTCAG 59 10030011 10030031 CTACTAGATGGTTCGATTGGT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 sv FBgn0005561 FBtr0100346 3 1 7 91 4 1128888 1128908 TACGTCTATGCTTTACGACAG 59 1128961 1129114 TAAGCGAACCAATGGAAGG 59 NA Drosophila melanogaster 50 bt FBgn0005666 FBtr0089793 1 1 4 100 4 748860 751409 TAAACTTCGACAGTGCGAG 59 751472 751491 CTTCATGGTGATCAATGTGC 59 NA Drosophila melanogaster 50 dpr7 FBgn0053481 FBtr0113462,FBtr0113463 1 2 3 80 4 270357 270431 GTTCACGTATTAACTGGTGAG 58 270297 270315 TATCATTGCAGTGAAAGCC 58 NA Drosophila melanogaster 50 CycG FBgn0039858 FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799 1 5 5 90 3R 27426459 27426477 CATCAAGGAGTCGTACACC 59 27426317 27426407 ATCAGGAATCCTCATGTACTG 58 NA Drosophila melanogaster 50 gskt FBgn0046332 FBtr0085784 3 1 1 60 3R 27198865 27198884 CTGCTCAAGGTACTATCGTG 59 27198906 27198925 CTTGGTGGTATAGTCAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3669 FBgn0039838 FBtr0113313 2 1 1 86 3R 27085021 27085040 TATGGAGATATCGATGAGGC 58 27085089 27085397 GCGATTGGGATTCTTTACG 58 NA Drosophila melanogaster 50 CG1750 FBgn0039836 FBtr0085767,FBtr0085768 2 2 2 126 3R 27079897 27079915 GATCTGCATGCATCTTTGG 59 27079734 27079808 TAATCTTGGGAGCATAGCTG 59 NA Drosophila melanogaster 50 CG12054 FBgn0039831 FBtr0085758 2 1 2 80 3R 27047178 27051543 ACCCACATAGACTATGACC 57 27051587 27051605 CAGGACATAACTTAAGGGC 57 NA Drosophila melanogaster 50 Cog7 FBgn0051040 FBtr0085509 3 1 1 168 3R 25758179 25758256 ATGATCTAAAGGGAGTCTGTG 58 25758031 25758049 GTATTGCCTTCAGCAAAGC 59 NA Drosophila melanogaster 50 ATPsyn-gamma FBgn0020235 FBtr0085541,FBtr0085540,FBtr0085539 2 3 3 77 3R 25574077 25574095 CAACACTAAGGTGTTCTGC 58 25574018 25574036 ACCATCAGGATGTTCTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dup99B FBgn0024381 FBtr0089608 2 1 1 60 3R 25540973 25540991 GGAGTGGATCCAAAGTCAG 59 25540878 25540897 GTAGGGTCCTAAGTTTAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31041 FBgn0051041 FBtr0085470 1 1 1 69 3R 25416392 25416410 GTACAACGAGGACTTCACC 59 25416341 25416359 GTAGCTTGAGTCGATCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15817 FBgn0028476 FBtr0085395,FBtr0085396 1 2 2 80 3R 25057749 25057767 TAATTGCATCAGGGAAACG 58 25057811 25057895 GCTATGTATCCATTTGCGA 57 NA Drosophila melanogaster 50 CG11876 FBgn0039635 FBtr0085368,FBtr0085367 3 2 4 85 3R 24939870 24940162 TCGATCACGCAAAGATACTC 59 24940208 24940228 GCGTGGACTTTCAATTATGAG 59 NA Drosophila melanogaster 50 CG33346 FBgn0053346 FBtr0085306 2 1 1 60 3R 24495366 24495384 CGGAAATACGTTCATGGAG 58 24495408 24495426 ATACGCCTTCATGGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14264 FBgn0039512 FBtr0085165 3 1 1 83 3R 23166719 23166737 AGTCTTATGTACGCCTGTC 58 23166964 23166982 TAATGCGAGAGTGTAGGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mdh FBgn0029155 FBtr0085110 2 1 1 125 3R 22981977 22982065 CCTACATTAAGACTCGCGA 58 22982154 22982172 ACGCTTGGAAGTAGTAGAG 58 NA InUTR Drosophila melanogaster 50 gb FBgn0039487 FBtr0085132 3 1 1 120 3R 22935942 22935960 TACATCTCCCTACCTCTGG 59 22935589 22935858 TCTTATCGCCAAAGGTCAC 59 NA Drosophila melanogaster 50 CG33970 FBgn0053970 FBtr0100012 1 1 2 103 3R 22175803 22175821 ATCTGGGATCATTTGGTGG 59 22175888 22181332 AGTAGACCGATCATATGCG 58 NA Drosophila melanogaster 50 CG31091 FBgn0051091 FBtr0084941 1 1 1 189 3R 21727248 21727332 GAAGAACTAATTCGACCGC 58 21727485 21727503 GTGATTAGCTCAGTTGGGT 59 NA Drosophila melanogaster 50 CG5913 FBgn0039385 FBtr0084938 1 1 1 60 3R 21720018 21720037 TCCAATGAGATCATGGATCG 59 21720059 21720078 CCACTTTAAACTGATCCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst57Da FBgn0011668 FBtr0084914 2 1 1 63 3R 21657557 21657575 CACTTTGCTGGTTGTTCTG 59 21657512 21657533 GACGTTGTGATTTGTATTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LpR1 FBgn0066101 FBtr0113480,FBtr0084925 2 2 6 156 3R 21575101 21577791 CTATAAATGAGGCCACTTGC 58 21573920 21573938 TATTCATCCGGTGAACAGG 59 NA Drosophila melanogaster 50 CG4774 FBgn0039360 FBtr0084931,FBtr0084929,FBtr0084930 3 3 3 81 3R 21512089 21512109 CGGATATGTTATAGTCCAGGG 59 21511697 21512046 TCCATCCAACAGATCTGTG 58 NA Drosophila melanogaster 50 CG5028 FBgn0039358 FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290 1 5 5 106 3R 21507753 21507830 AACTACGGTGACCATTACG 59 21507900 21507918 ATACTGGCACTGATCATGG 59 NA Drosophila melanogaster 50 Fur1 FBgn0004509 FBtr0089982 3 1 6 91 3R 21174051 21177846 GTGCTTAGAGTGCAATGAC 58 21173978 21173996 CTTGGAACTTGTCCAATGG 58 NA Drosophila melanogaster 50 veli FBgn0039269 FBtr0084787 2 1 2 92 3R 20890641 20890659 GAATAATACCTGGAGGCGT 58 20890503 20890585 TTTCTCCTTCGACAGACAC 59 NA Drosophila melanogaster 50 CG31357 FBgn0051357 FBtr0084735 1 1 1 60 3R 20655020 20655039 TGGTGCATAGACAATAAGTC 57 20654979 20654997 TCAGGCTGAATTCAATGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33341 FBgn0053341 FBtr0084613 3 1 1 103 3R 20194861 20194879 AAGAGATTACTGCTGCCAC 59 20195002 20195022 AGGCGACTATATTCATCTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Dms FBgn0011581 FBtr0084607 3 1 1 88 3R 20168705 20168723 AGAACTCCGATCAACTGAC 59 20168838 20168856 CTTCAACAGGTCATCAGAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG12268 FBgn0039131 FBtr0084513,FBtr0084514 1 2 2 93 3R 19769945 19769963 TTCTGCGTCATCTTCTTCC 59 19769812 19769891 GTTGGACATTGAGTAAGAATGG 59 NA Drosophila melanogaster 50 CG10214 FBgn0039115 FBtr0084463 3 1 1 64 3R 19592547 19592565 TCTTTCACGCATCGTAGTC 59 19592501 19592520 GCTTTGTAATACGCAAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6697 FBgn0027526 FBtr0084347 1 1 1 60 3R 18887478 18887496 GAGATATTCCGCAAGACAC 57 18887520 18887538 TGTACTTCAGGTTGAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17119 FBgn0039045 FBtr0084357,FBtr0084358 1 2 2 102 3R 18881579 18881597 TACTCGAAATCAGTCGGTG 59 18881430 18881515 GAACACATCCTTCACAATCTC 58 NA Drosophila melanogaster 50 CG17121 FBgn0039043 FBtr0084361 3 1 1 83 3R 18871191 18871263 GGCTCCTACATAATGACCAC 59 18871127 18871145 TAAGGCATTTACTGCCACC 59 NA Drosophila melanogaster 50 CG5798 FBgn0038862 FBtr0084016 1 1 1 80 3R 16962658 16962740 AGATTTGAGGTACGTTGTGG 59 16962783 16962801 ATGGTGAGGAATTCGTGTG 59 NA Drosophila melanogaster 50 CG5745 FBgn0038855 FBtr0084008 3 1 1 85 3R 16929821 16929841 GGATAACTACATCTTTGCCCA 59 16929888 16930316 GTAAGTTCACGTCAATGCG 59 NA Drosophila melanogaster 50 CG4562 FBgn0038740 FBtr0083859,FBtr0113250 2 2 2 90 3R 15695192 15695212 CGGACTGTTTATCGTATTTGC 59 15695061 15695140 TTTGTTCACCCAGTAGGAC 59 NA Drosophila melanogaster 50 CG18493 FBgn0038701 FBtr0083756 1 1 1 90 3R 15216464 15216482 CTGGTATGATATGGCCCAG 59 15216536 15216609 TGACATGGTTGATGTTGGT 59 NA Drosophila melanogaster 50 CG14303 FBgn0038633 FBtr0083659 1 1 1 97 3R 14471598 14471679 AGATAGTGCAGAACAACCC 59 14471737 14471758 GTTAGTATCGTAATTGCTGGTG 59 NA Drosophila melanogaster 50 CG12321 FBgn0038577 FBtr0083616 3 1 1 60 3R 14014301 14014320 TTCTAAAGGACAAGCGTACC 59 14014260 14014280 ATGCTCGGTATGATTACTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14323 FBgn0038529 FBtr0083498 3 1 1 63 3R 13447716 13447735 GATCATACAGGACCAGAACC 59 13447672 13447690 GACGAAACAAAGTACCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17562 FBgn0038449 FBtr0083329 1 1 1 74 3R 12442647 12442725 CATTAAGCGTTTAAAGCTGC 58 12442762 12442780 GACCACAGTGCTAGTAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 gish FBgn0011253 FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333 3 6 8 188 3R 12119862 12122388 TAGCGAAACAACTTCTCCA 58 12122599 12122617 CCCGATATGGTATATGCCT 58 NA Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083209,FBtr0083210,FBtr0083205,FBtr0083204 3 8 8 80 3R 11780339 11780357 TGGATCCTTCTTGTCATCG 59 11780398 11780482 GAGTCGAGAATGGTATTATCCT 58 NA Drosophila melanogaster 50 CG31296 FBgn0051296 FBtr0083155 1 1 1 69 3R 11356631 11356649 AATGGGTGTCTATATGCCG 59 11356521 11356539 ATCTGCCATCAGTAGTAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG6118 FBgn0038339 FBtr0113240,FBtr0113239 2 2 2 93 3R 11249454 11249474 AGGTGAATGTCAAGTATGAGG 59 11249255 11249399 CTGTCCAGGTTCTTCTCTG 59 NA Drosophila melanogaster 50 CG6196 FBgn0038323 FBtr0083116 3 1 1 79 3R 11176180 11176199 AATCTAGGCATTAACAGCAC 57 11176120 11176139 TTCCTGTTCACTTCTATGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 FK506-bp1 FBgn0013269 FBtr0083120 1 1 1 114 3R 11158342 11158360 TCGCATCATGTTCTACACC 59 11158179 11158197 CAGCAAATTCTCGATCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089966,FBtr0089967,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 2 7 12 159 3R 11122418 11125004 GAAATACGATGAGGTTGCC 58 11126526 11126544 CTTCTCCTCAGAGACTTCC 58 NA Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089960,FBtr0089968 1 2 12 196 3R 11121253 11125836 AGAAATACGAAGAGGTGGC 59 11127363 11127381 GATTTGCGTCTCAAAGGTC 59 NA Drosophila melanogaster 50 CG4285 FBgn0038310 FBtr0083061 3 1 1 105 3R 11080021 11080225 AATCGAAAGGTTGATGCCT 59 11080294 11080312 GTAAAGTCGGATTGCTTGG 58 NA Drosophila melanogaster 50 Hsc70-4 FBgn0001219 FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056 1 6 6 61 3R 11071531 11071549 GGTATCCTCAACGTGACTG 59 11071571 11071592 GTAATGGTGATCTTGTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 VhaPPA1-1 FBgn0028662 FBtr0083005 2 1 1 149 3R 10729040 10729060 GTCAAGATCCTTATTGTGGAG 58 10728590 10728608 TGATGATAATGGAGTGGCG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG3610 FBgn0038266 FBtr0082994 1 1 1 60 3R 10671628 10671649 CTAAAGGATGCAGTTACAAAGG 59 10671670 10671688 ATTGGTCTAGGGATTCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12207 FBgn0038220 FBtr0082922,FBtr0082921,FBtr0082923 2 3 3 153 3R 10126681 10126702 CCTTAACAAGATAGACAACACC 58 10127025 10127043 CTTGTAGGAGTTGTTCAGC 58 NA DesignNoJunction Drosophila melanogaster 50 Or88a FBgn0038203 FBtr0082890 3 1 1 84 3R 9936370 9936388 CAATATTGCCAGCGAACAC 59 9936435 9936510 CCAGCTGCATTATTTCAGTG 59 NA Nonspecific Drosophila melanogaster 50 Or88a FBgn0038203 FBtr0082890 1 1 1 84 3R 9936370 9936388 CAATATTGCCAGCGAACAC 59 9936435 9936510 CCAGCTGCATTATTTCAGTG 59 NA Nonspecific Drosophila melanogaster 50 ninaB FBgn0002937 FBtr0082820 1 1 1 87 3R 9527225 9527244 GGATAACTCGATGATTTCCA 57 9527293 9527369 GCAGGGATTTATTCTATGCA 57 NA Drosophila melanogaster 50 CG7381 FBgn0038098 FBtr0082727,FBtr0082726,FBtr0082725 3 3 3 83 3R 8795406 8795427 TCGATGACGAGGATATAAAGAC 59 8795254 8795362 TGCTGCCATACTTCTTCTC 59 NA Drosophila melanogaster 50 Arp87C FBgn0011745 FBtr0082652 3 1 1 87 3R 8519472 8519558 CTCAAGATCAGGATCGCTG 59 8519608 8519627 TCTTGAAAGTATCGAGCGAG 59 NA Drosophila melanogaster 50 Hsp70Aa FBgn0013275 FBtr0082512 1 1 1 60 3R 7781730 7781748 TTTCAAGGTTGTAAGCGAC 58 7781688 7781706 GGACTCACCCTTATACTCC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14721 FBgn0037942 FBtr0082430 2 1 1 176 3R 7561999 7562017 CAATGTCTTCCTGTTGAGC 58 7562156 7562234 TGTGCATGATATAGGTTCCA 58 NA Drosophila melanogaster 50 CG14713 FBgn0037928 FBtr0110809 1 1 1 60 3R 7496274 7496292 AACTGGATCACATGCAGAC 59 7496314 7496334 GCTATAATCACATTCACGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Csk FBgn0086903 FBtr0082447,FBtr0082446,FBtr0082444,FBtr0082448,FBtr0082445 3 5 5 85 3R 7460836 7460854 AAATCAGACATGTGGAGCT 58 7460708 7460787 TCGGCTAATGGAATTCTGG 59 NA Drosophila melanogaster 50 CG14710 FBgn0037920 FBtr0082415 1 1 1 93 3R 7446857 7446937 CACCAATGCGAAATATGCA 59 7446994 7447012 TACACTTGTATGGACGGTC 58 NA Drosophila melanogaster 50 CG6783 FBgn0037913 FBtr0100323 1 1 3 210 3R 7390345 7390363 TACCTACACCCTGACTACC 59 7386919 7390171 GGGAATTAGGGTGATCAGC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG17230 FBgn0046225 FBtr0082392,FBtr0082393 2 2 2 66 3R 7291079 7291097 TTCAGTTTCCGAGACTTCC 59 7291127 7291145 CAGATTGGAGAACGAATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17184 FBgn0037884 FBtr0082364,FBtr0082363 3 2 2 93 3R 7059704 7059723 TTTATTTCGTCGGTGAACAC 58 7059279 7059648 CATCGAATTCGATTCTGGC 59 NA Drosophila melanogaster 50 CG6629 FBgn0037860 FBtr0082380 1 1 1 60 3R 6941070 6941091 CTGTCACTTTGAAAGTGATACC 59 6941031 6941049 TTTCGATCGTCATAAGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hth FBgn0001235 FBtr0082255 3 1 6 88 3R 6359719 6374338 ACATATGATGGACGATGGTG 59 6359650 6359668 ACTGAGGAATACAATCGCC 59 NA Drosophila melanogaster 50 Rrp46 FBgn0037815 FBtr0082248 3 1 1 235 3R 6239342 6239361 CTTGGAGTGTAACTACCGAC 59 6239614 6239635 CCGCAAAGCTATACTTTAAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34303 FBgn0085332 FBtr0112499 1 1 1 71 3R 5977110 5977128 ATGTTAATCACACCTGCCC 59 5976988 5977006 CATCTTCATCAGGAGACCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG11722 FBgn0037777 FBtr0082205 1 1 1 80 3R 5870896 5870916 CTCAATATGAAAGACTCCAGC 58 5870770 5870854 CACTCGCTTGATAAATCGA 57 NA Drosophila melanogaster 50 unc-115 FBgn0037733 FBtr0082096,FBtr0082097 2 2 4 100 3R 5515591 5516165 CTTAGCGAGATGCACTACC 59 5515509 5515527 TAGCTGTAGGTGTAGATGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12951 FBgn0037677 FBtr0082058 2 1 1 115 3R 5155292 5155375 GGGTCTCAATGATACTTATGGA 59 5155198 5155217 GATATTTGGGATCCGTTTGG 58 NA Drosophila melanogaster 50 CG16733 FBgn0037665 FBtr0081974 2 1 1 60 3R 5078184 5078202 AGGATCGTGTATACTGCTC 58 5078223 5078244 TGAAGTAGTGATAGTACGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pyd FBgn0003177 FBtr0089783,FBtr0089784,FBtr0112822 3 3 8 118 3R 4664203 4664221 ATCTTTAGCACCCAGATCG 59 4660661 4664122 TCGTAGGGTACCTTAGACTC 59 NA Drosophila melanogaster 50 stck FBgn0020249 FBtr0081845,FBtr0081846,FBtr0081844 1 3 3 71 3R 4184810 4184828 ACAGAGTTGGATTCCACTG 59 4184861 4184937 CAGTTCGTTCATATCGTTAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG18228 FBgn0037560 FBtr0081868 1 1 1 60 3R 4086818 4086837 AGAGGAGGTTGCTTTATTCG 59 4086777 4086798 ATATGACAGGATGGAAATCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17816 FBgn0037525 FBtr0113202,FBtr0081770 2 2 3 185 3R 3697537 3697555 GAGTATACAGATGGACGCC 59 3691467 3694093 CAACTCATGTAGAGTAGCCG 59 NA Drosophila melanogaster 50 alpha-Est3 FBgn0015571 FBtr0081545 2 1 1 102 3R 3365220 3365299 AAAGCGTACTGTGAGTACG 59 3365136 3365156 GATAGAGGTATGTGGAAGCAC 59 NA Drosophila melanogaster 50 SytIV FBgn0028400 FBtr0081578 3 1 1 218 3R 3094840 3094921 ACCAAGAATGAGGTCATCG 59 3095103 3095121 TCACATGACTCCCATTTCG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG1105 FBgn0037465 FBtr0081645 3 1 1 149 3R 2890486 2890613 GTATCCTAATATACCGCCAC 57 2890356 2890375 GCTGTGGCATTATTAAACTG 57 NA Drosophila melanogaster 50 CG1162 FBgn0026564 FBtr0081669 3 1 1 71 3R 2580407 2580427 CCATAAACTGTCCAAATCGAG 59 2580356 2580374 TAATGCAATGAAAGCAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15177 FBgn0037461 FBtr0081700 2 1 1 114 3R 2454467 2454485 AAGAACACCGGAGTTATCG 59 2454321 2454390 TAAATTCAGTCATGTCCGCT 59 NA Drosophila melanogaster 50 CG15185 FBgn0037449 FBtr0081675 1 1 1 60 3R 2353722 2353743 GATACTATTAGCCATTCACCTG 58 2353764 2353782 TGTGATAACAGATTACGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12171 FBgn0037354 FBtr0078708 1 1 1 60 3R 1459486 1459504 CTCTTGGCTAAACTGGGAG 59 1459526 1459546 CGTTGAGCTTATCCAAATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hkb FBgn0001204 FBtr0078951 1 1 1 85 3R 171348 171366 CGACCACTTAAAGAAGCAC 58 171281 171299 GGTATGAGTACATGGGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9780 FBgn0037230 FBtr0078960 3 1 2 289 3R 118387 118405 CGAAGATGTCCCTACAGAG 58 118043 118061 CGTAAGCATATGGTGATCC 57 NA DesignNoJunction Drosophila melanogaster 50 Qm FBgn0024733 FBtr0070047,FBtr0070048 1 2 2 83 3L 23087936 23088013 GCTGATAGGCTTCAAACTG 58 23087871 23087889 AATGGGTTGACCAATACGA 58 NA Drosophila melanogaster 50 slif FBgn0037203 FBtr0078555,FBtr0078556,FBtr0078557 1 3 3 82 3L 22885585 22885671 AATCTTTGCGTCCATAATGG 58 22885716 22885734 TGTATGCTAACAGGGTTCC 58 NA Drosophila melanogaster 50 CG33769 FBgn0053769 FBtr0091770 1 1 1 60 3L 22641441 22641459 GCTGTCCCATAAGAGAAGG 59 22641483 22641501 ACATTGTTCGCATCTAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7130 FBgn0037151 FBtr0078484 1 1 1 115 3L 22068662 22068680 GACGTCAAGAAGGGATACC 59 22068565 22068583 TCAAAGAGCACTTCGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7139 FBgn0027532 FBtr0078487,FBtr0078486 3 2 2 108 3L 22061080 22061098 TATTCATTATCACGGGCCG 59 22060933 22061008 TTAACTTCTTGCCATCGCA 59 NA Nonspecific Drosophila melanogaster 50 TyrR FBgn0004514 FBtr0078479 1 1 1 144 3L 22056139 22056786 AAGGTTGCATACAGGTCTG 59 22056892 22056912 TCCTCAATGAACTGGTTAACC 59 NA Drosophila melanogaster 50 CG7414 FBgn0037135 FBtr0078441,FBtr0114593 1 2 2 82 3L 21819506 21819584 TAGCAATGGGTTCAAGGTG 59 21819630 21819648 TTCCCAACAATTCCTGACC 59 NA Nonspecific Drosophila melanogaster 50 Mkrn1 FBgn0029152 FBtr0078383,FBtr0078384 1 2 2 68 3L 21524869 21524890 CAGAGCCAGAATGAAATAATCG 59 21524638 21524656 ATAATCTCGCCGATCTACG 58 NA DesignNoJunction Drosophila melanogaster 50 Cpr78Ca FBgn0037067 FBtr0078409 1 1 1 60 3L 21285636 21285657 GTTCAACTAATCCATTGTACGC 59 21285597 21285615 GGTAGTAGATGGTCCTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12983 FBgn0037040 FBtr0114616 3 1 4 96 3L 20959293 20959313 AACCATAGAAAGGGTACAGAG 58 20958844 20959235 ATTACGGGTAGCCTTATCC 58 NA Drosophila melanogaster 50 CG5872 FBgn0036991 FBtr0078194 1 1 1 84 3L 20430142 20430160 GTCATAGAGGAGAGTCCCA 59 20430208 20430367 TCGTGTTGTCTGTTCTCTG 59 NA Drosophila melanogaster 50 fat2 FBgn0036930 FBtr0074906,FBtr0100509 2 2 2 80 3L 20008038 20008057 CGCTATTGAACTGTTACGAC 59 20008099 20008174 TTTCCCATATCACTAACCGT 58 NA Drosophila melanogaster 50 CG7433 FBgn0036927 FBtr0074908,FBtr0074909 1 2 2 95 3L 19992456 19992474 CATAGCTCCGAAAGGACTC 59 19992275 19992400 TTCTGGTACCATATGAAGATGC 59 NA Drosophila melanogaster 50 Rpn1 FBgn0028695 FBtr0074893 2 1 1 60 3L 19909525 19909544 TGATACTTCTGTGGGATGTG 59 19909565 19909585 GTGGAGTACAAGTACTTATCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8533 FBgn0036907 FBtr0074877,FBtr0114601,FBtr0074878,FBtr0074876 2 4 4 183 3L 19794992 19795010 CATCTTCGACTACAAGCCT 59 19795205 19795275 TATGGTTCAGATGTGTCCAC 59 NA InUTR Drosophila melanogaster 50 HLH106 FBgn0015234 FBtr0074873,FBtr0074875,FBtr0074874 3 3 3 104 3L 19790267 19790285 TCTTCACGTACGATCTGAG 58 19790350 19790440 GCTCTCGATATTGCTTAATGAC 59 NA Drosophila melanogaster 50 tey FBgn0036899 FBtr0074960 3 1 1 89 3L 19649972 19649990 AGGGATCACAGGATTACGA 59 19647007 19649921 TATGCAGATGTCTCAAATCCC 59 NA Drosophila melanogaster 50 CG8786 FBgn0036897 FBtr0074962 3 1 1 88 3L 19635049 19635067 CCATCTGTTTGCAAACCTG 59 19634304 19634999 CTTATAAGCAACACCCTTCAC 58 NA DesignRelaxed Drosophila melanogaster 50 CG8798 FBgn0036892 FBtr0074967,FBtr0074968 3 2 2 83 3L 19603770 19603788 ATCTGTGCGATTTAGGAGC 59 19603647 19603725 GTTCTGGGATATCTGTTTCCT 59 NA Drosophila melanogaster 50 CG32214 FBgn0052214 FBtr0074929 1 1 1 63 3L 19460846 19460864 CTCTCCTTTGGCTTACTCC 59 19460891 19460909 TTAGATAAGGAGCGGTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075011 2 1 11 102 3L 19294146 19294164 CTGAGTGTCTCTTTGTGCA 59 19294010 19294081 TTAAAGGGTAGACAATCGGC 59 NA Drosophila melanogaster 50 CG14089 FBgn0036861 FBtr0075015 3 1 1 63 3L 19273877 19273895 GTCGAATCTGGAAGTTCTC 57 19273832 19273850 AAGAACAGACAGTAGTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14084 FBgn0036855 FBtr0074990,FBtr0074989 2 2 2 61 3L 19255134 19255152 AATGTGCTACATGTTCCTC 57 19255176 19255195 ACTTTAGGGTTATCCAGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11577 FBgn0036847 FBtr0075034 2 1 1 60 3L 19088831 19088849 GATCTGGGAATACCCTACG 58 19088789 19088807 TCTTCATTTGGGTGACCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3893 FBgn0036826 FBtr0075075 2 1 1 63 3L 18894431 18894449 TCCCATTTGATACCAGAGC 59 18894318 18894336 TAATGTTTCGATCCTCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5589 FBgn0036754 FBtr0075170 1 1 1 110 3L 17796349 17796367 TCGTACATTCATCGGATCG 59 17796196 17796275 TATTATAAGCGCGATGCCT 58 NA Drosophila melanogaster 50 CG34251 FBgn0085280 FBtr0112445 1 1 1 185 3L 17670664 17676046 ATGAGTTTCAGAGTGTGCC 59 17676195 17676213 TGTTGACCTCATAGCACTG 59 NA Drosophila melanogaster 50 CG7589 FBgn0036727 FBtr0075221 2 1 1 81 3L 17465633 17465714 CTGGAAAGACCATTTGAATACG 59 17465753 17465774 GCAGGAAGTACACATAAATACG 59 NA Drosophila melanogaster 50 Mo25 FBgn0017572 FBtr0075358 1 1 1 60 3L 16607530 16607549 CACAATTTCACCGTGATGAC 59 16607489 16607510 TCATCATTAGCTTGAGGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0112850,FBtr0075441 3 2 6 229 3L 16069528 16069546 AGACCAAATCACTGTCAGC 59 16069739 16070090 ACTGCCACTTTCATATCCT 58 NA DesignRelaxed Drosophila melanogaster 50 Eig71Ej FBgn0014850 FBtr0075582 3 1 1 77 3L 15653890 15653908 GTAAGGCGTTGTGATATGC 58 15653767 15653785 TAGTCTAGCCACATTCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12355 FBgn0040805 FBtr0113333 2 1 2 103 3L 15487706 15487725 ACAATAGGAAGATATGCCGT 58 15486637 15486655 ATAACCTTAGTGGTGCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9311 FBgn0036448 FBtr0075700 2 1 1 83 3L 14764773 14764858 TGGATTCGATTCACCTATCG 59 14764709 14764727 GACTCATTGCCCTCTATCG 59 NA Drosophila melanogaster 50 CG9384 FBgn0036446 FBtr0075690 3 1 1 286 3L 14756184 14756202 GAAGAACATAGCTTTCCGG 58 14757032 14757050 ATCTTGAACATCGTTCGCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100039,FBtr0100040 1 2 6 93 3L 14193463 14193483 CGAACGATGGAAATAACAACC 59 14193538 14193847 TCGTCATCATCTTGAGGTG 59 NA Drosophila melanogaster 50 Hml FBgn0029167 FBtr0075753 2 1 1 80 3L 13840915 13840990 AGATTGTGCTCCTACTTGTG 59 13841032 13841051 ATCTTAGAGCACTGACAGAC 58 NA Drosophila melanogaster 50 sens FBgn0002573 FBtr0075862 3 1 1 83 3L 13390163 13390417 GTACATACATACCGGCGAG 59 13390098 13390116 ATATGCGTGATCAGGTTGG 59 NA Nonspecific Drosophila melanogaster 50 Or69a FBgn0041622 FBtr0075901,FBtr0075902 3 2 2 117 3L 12957620 12957641 GTGCTACGAAACCTTATATGTG 59 12957461 12957479 TATTTAAGGGACCGCACAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32106 FBgn0052106 FBtr0075947 2 1 1 93 3L 12768589 12768607 CATTTCGTATGAGCAGCAC 59 12768454 12768473 TGATTGGTATTGAGTCTGGT 58 NA DesignNoJunction Drosophila melanogaster 50 eyg FBgn0000625 FBtr0100170,FBtr0075979 2 2 2 93 3L 12457475 12457496 AGTTCGACAAGAGTCATTATCC 59 12457192 12457421 GAGAACCACACCTGAACTC 59 NA Drosophila melanogaster 50 CG17144 FBgn0036267 FBtr0076015 3 1 1 60 3L 12200768 12200786 GCCATAGCCTCCAATAAGG 59 12200726 12200745 AGAGATTGCTATAGCTTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6272 FBgn0036126 FBtr0076234 1 1 1 60 3L 11090868 11090887 CTCTTAAGGTTCAGATCGAG 57 11090827 11090846 ATGATCAGATCTCTAAGCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7949 FBgn0036107 FBtr0076270 2 1 1 60 3L 10876254 10876272 TTAATGACCCGGAACATCC 59 10876296 10876314 ATTAGATCTTCCTGCACCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32036 FBgn0052036 FBtr0114525 2 1 1 82 3L 9481436 9481454 CGATTGGTGGTACAATGTC 58 9481312 9481330 GAATGTAGGGATTGTGCTC 57 NA DesignNoJunction Drosophila melanogaster 50 Uba2 FBgn0029113 FBtr0076734 2 1 1 93 3L 8120385 8120459 GTAACATCTACTGATTATGGCG 58 8120313 8120332 GATTTACATGATTCCTGGCG 59 NA Drosophila melanogaster 50 CG32365 FBgn0052365 FBtr0076746 1 1 1 146 3L 7883367 7886344 TTGAAACAGACCGAAACCA 59 7886454 7886472 ATGATGCAGACTCTTGGAG 59 NA Nonspecific Drosophila melanogaster 50 bhr FBgn0082598 FBtr0076849,FBtr0076848 3 2 2 132 3L 7365499 7365517 GAGAATCAGCTAAGGGAGC 59 7365613 7365692 TTTACGACAGGTAGCTAGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG32390 FBgn0052390 FBtr0076924 3 1 1 66 3L 7137429 7137447 AATTGCCATGTAACCACCA 59 7137381 7137399 GCTGGTCAGGATTATTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dbi FBgn0010387 FBtr0076915 3 1 2 240 3L 7125756 7125774 CTAACCCAGAATGGTTTCC 57 7126419 7126437 AAAGGTGATGTACTCCTGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14823 FBgn0035734 FBtr0076908,FBtr0076905 2 2 4 190 3L 7060746 7060764 TGCCACGGATAATATTCCG 59 7061142 7061160 CATAGCTACGCACAATACG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Usp36 FBgn0035633 FBtr0077104,FBtr0077103,FBtr0077099,FBtr0077100 1 4 6 83 3L 5765468 5765543 AGAAGAAGGTATCTGCCAC 58 5765590 5765608 TCATGGAGAATCGCTTCAG 59 NA Drosophila melanogaster 50 DnaJ-1 FBgn0015657 FBtr0077124,FBtr0077123 1 2 2 60 3L 5744665 5744686 AAGACTTCTACAAGATTCTGGG 59 5744626 5744644 GCCTTCTTGATCTCATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32259 FBgn0052259 FBtr0073206 3 1 1 101 3L 4070066 4070084 ATCATGTCGAAAGTCGTCC 59 4070149 4070412 GTTGAACTGGGCTTTATCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14977 FBgn0035469 FBtr0073158 3 1 1 62 3L 3897188 3897206 ATCACCATCGATTACGAGC 59 3897229 3897250 GATGTATATTCTACGGTTGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10858 FBgn0035458 FBtr0073190 3 1 1 160 3L 3754176 3754194 CATTCGAGTTTAGAACGCA 58 3751222 3753050 AATCACAGAGGAAATCGCT 58 NA DesignRelaxed Drosophila melanogaster 50 CG10359 FBgn0035452 FBtr0073136 3 1 2 156 3L 3613874 3614079 AGCTTAAAGATATCTCGCG 57 3614199 3614217 ACAGATCTGACACTGAGAG 57 NA Drosophila melanogaster 50 CG10359 FBgn0035452 FBtr0073136 1 1 2 154 3L 3613875 3614080 GCTTAAAGATATCTCGCGC 58 3614198 3614216 CAGATCTGACACTGAGAGC 59 NA Drosophila melanogaster 50 dro5 FBgn0035434 FBtr0073062 1 1 1 90 3L 3316846 3316864 GTTCCTGTACCTCTTCCTG 58 3316918 3316936 TCCTCCGTATCTTCCAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11486 FBgn0035397 FBtr0072995,FBtr0072993,FBtr0113130,FBtr0113129,FBtr0072999,FBtr0072996 1 6 15 80 3L 3083796 3085208 TCGCCACTTATATGGTCAC 59 3085252 3085270 ATGGTGCATAGAAGTTGGG 59 NA Drosophila melanogaster 50 dos FBgn0016794 FBtr0072926,FBtr0072927 1 2 2 92 3L 2593243 2593264 CGCGTAGTCATAATAACATAGG 58 2593317 2593403 TATTGGCCAATTGTTGCAG 58 NA Drosophila melanogaster 50 oxt FBgn0015360 FBtr0072904 3 1 1 118 3L 2261463 2261482 GAGCACGTTTACTACATCCA 59 2261019 2261037 CATATGGTGGAGAATCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG1275 FBgn0035321 FBtr0072905,FBtr0072907,FBtr0072908,FBtr0072906 3 4 4 139 3L 2253685 2253787 GTATGGCAACTCCATTCTG 58 2253564 2253582 AGTTGTGGGAATCGAAGAC 59 NA DesignRelaxed Drosophila melanogaster 50 sls FBgn0086906 FBtr0072848,FBtr0072849 2 2 2 101 3L 2091321 2091339 AGTTTAAGACGACGGTGAC 59 2091120 2091257 CGAAGATCATCTGGAAGTCC 59 NA Drosophila melanogaster 50 CG7967 FBgn0035251 FBtr0072809 2 1 1 73 3L 1652364 1652382 GAAACTATTCCTGTACGCC 57 1652242 1652260 AGTAGAAGGCCTTAACGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG12090 FBgn0035227 FBtr0072703 3 1 3 149 3L 1528071 1529118 AAGATCATCATAGGCGTCG 59 1527940 1527960 GTAATCGTGATTCACATCGTC 59 NA Drosophila melanogaster 50 CG9186 FBgn0035206 FBtr0072727,FBtr0072728 3 2 2 70 3L 1312824 1312842 AGACCATAACCGAGAAGGA 59 1312772 1312790 CTCTGTGTAGAAACCTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Aplip1 FBgn0040281 FBtr0072627 1 1 2 248 3L 1197306 1197520 CAAGAAATCTTCCATTCTGC 57 1197731 1197749 ATGCTCTTAAAGTCGTTGG 57 NA DesignRelaxed Drosophila melanogaster 50 MED14 FBgn0035145 FBtr0072554 1 1 2 158 3L 593650 593733 CTGGCTGAACTATTACCAC 57 593855 593873 GAAGCTCATTATCTGCGAC 58 NA Drosophila melanogaster 50 klar FBgn0001316 FBtr0072565,FBtr0112808,FBtr0110818 2 3 4 80 3L 444288 444306 CTCGGAGAACTATTCCGAG 58 444136 444245 ATGAAATTGCGATAGTCGTC 58 NA Drosophila melanogaster 50 mthl9 FBgn0035131 FBtr0072574 1 1 1 80 3L 330980 331058 AGAAACATAGGATTTCTGGC 57 330919 330937 GAGCAGAAAGTCAAGACTG 58 NA Drosophila melanogaster 50 pyx FBgn0035113 FBtr0072525,FBtr0072524 1 2 2 104 3L 219642 219727 AAATGTTCACAAAGGTGGC 59 219556 219576 GATAATCATTGAAGAGCACGG 59 NA Drosophila melanogaster 50 5SrRNA:CR33419 FBgn0053419 FBtr0086411 1 1 1 62 2R 15629368 15629386 AATACATCGGTTCTCGTCC 59 15629324 15629342 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Phk-3 FBgn0035089 FBtr0072404 3 1 1 60 2R 20858731 20858749 AAGTACGACAGTGTCAACG 59 20858689 20858709 GATAATTACCCAACACTCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30424 FBgn0050424 FBtr0113375,FBtr0113377,FBtr0113376 1 3 3 97 2R 20853307 20853382 ACTTCGGGAATTCAGTCAC 59 20853228 20853246 TTGAAGTGGTCTTCAGTCC 59 NA Drosophila melanogaster 50 CG30169 FBgn0050169 FBtr0072302 3 1 1 67 2R 20414642 20414660 GGCAGACACTATTTATGGC 58 20414691 20414768 TTCCACTTTCCAATCGGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG16837 FBgn0035009 FBtr0072297 2 1 1 62 2R 20363004 20363024 GTTCGAGGTTATCAGTAACTG 58 20363048 20363066 TAACCGCCTTCTTTACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4049 FBgn0034976 FBtr0072285 1 1 1 103 2R 19997350 19997434 GGATTTATAGATACGGTCAGAC 57 19997268 19997286 TCCTTGTTTCTTGATCTGC 57 NA Drosophila melanogaster 50 enok FBgn0034975 FBtr0072250 2 1 1 67 2R 19993167 19993185 TAAGTAATCCACAGCACCA 58 19993280 19993298 TGAGCTAACTGCAATGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3825 FBgn0034948 FBtr0072204 2 1 1 60 2R 19863712 19863731 AAATACCGAGGAGCTAAAGG 59 19863671 19863689 CTTCTTGACAGGAGTCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 3 8 8 81 2R 19817553 19817571 GGATATCATGGAGAAGCCC 59 19817426 19817508 TCCAATAGCCATGTAACGG 59 NA Drosophila melanogaster 50 angel FBgn0016762 FBtr0072083 1 1 1 76 2R 19582127 19582145 TCCTCAAAGTTTGAGTTGC 58 19582185 19582203 TTGTCGCGATTGAGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30183 FBgn0050183 FBtr0072099 2 1 1 118 2R 19580473 19580491 AGAACCGGAATCTTTCTCG 59 19580315 19580392 GGAAGTATTATTGGGCACCT 59 NA Drosophila melanogaster 50 Pal FBgn0020623 FBtr0089502,FBtr0089501,FBtr0089500 1 3 3 162 2R 19576615 19576633 TTACTGGATCACGGATGTG 59 19576820 19576900 GATGAAGAACTCTCCGGTG 59 NA Drosophila melanogaster 50 CG30290 FBgn0050290 FBtr0071672 3 1 1 92 2R 17579804 17579823 CATAGATCTAGGCAAGTGGG 59 17579877 17579953 ATATTATCGCAAATCCCGGT 59 NA Drosophila melanogaster 50 CG10543 FBgn0034570 FBtr0071524,FBtr0071523,FBtr0071525 2 3 3 139 2R 16891581 16891599 CTGCAACTATTGCGATCAG 58 16891759 16891843 AGCTACCCATATCTTCTTCG 58 NA Drosophila melanogaster 50 CG13426 FBgn0034510 FBtr0086295 1 1 1 60 2R 16400297 16400316 CTTATCATGGGCTTGATTGG 58 16400256 16400277 TGATGTTGACTATGGGTATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED8 FBgn0034503 FBtr0086297 1 1 1 67 2R 16213942 16213960 ATCAACATCACAGAGGGTC 58 16213893 16213912 CGAGTTCTCAAATAGTCTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr56F FBgn0034499 FBtr0086301 1 1 1 132 2R 16176617 16176635 TTCAAGTACGACGTACAGG 59 16176503 16176521 CCTCGTACTCAACAATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16894 FBgn0034483 FBtr0086324 2 1 1 60 2R 16099484 16099504 CTGAATACATCAAACGAGTCC 58 16099444 16099464 CGGTCGTAGATAAGATTTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15086 FBgn0034374 FBtr0086651,FBtr0086649,FBtr0086650,FBtr0086648 3 4 4 61 2R 14567638 14567657 GGATCCTTACTACCAACGAG 59 14567540 14567558 TGCATGATCCGTAGTTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33724 FBgn0053724 FBtr0091722 2 1 1 61 2R 14528064 14528083 CAATCGCTACTACATTTCCT 57 14528107 14528125 CGGTAGTGGGTAAATTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 imd FBgn0013983 FBtr0086725 3 1 1 174 2R 14298397 14298415 CATGATGCAGTCACAAGAG 58 14297824 14298260 CAGCTGGTATATCACCTCTC 59 NA Drosophila melanogaster 50 CG10916 FBgn0034312 FBtr0086749 3 1 1 60 2R 14061967 14061986 GTCTTTACCAGGGTATCCTG 59 14062009 14062027 ATGTACATGACCTTGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14492 FBgn0034283 FBtr0086818 1 1 1 60 2R 13781398 13781418 GAATATCATGGAGCGTTTCAG 59 13781358 13781378 GGTAAAGTTTGGCTTGAAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5033 FBgn0028744 FBtr0089551,FBtr0089550 2 2 2 81 2R 13679635 13679718 ATGGTCTATAATGACCTGCTG 59 13679761 13679779 CAAACTCATCGCGTTTCTC 59 NA Drosophila melanogaster 50 Sema-1b FBgn0016059 FBtr0086890,FBtr0086891 1 2 2 85 2R 13565383 13565401 TTTATAGGCAACTCGACGG 59 13564084 13565334 TTGTAGATGACGTCCTTGG 58 NA Drosophila melanogaster 50 l(2)k07824 FBgn0022070 FBtr0087170 1 1 1 60 2R 12234077 12234098 CTGTGAAACCATTCTACTACTC 58 12234038 12234056 AGCTTTAGCTTCGATTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15704 FBgn0034103 FBtr0087136 3 1 1 99 2R 12167619 12167638 CGATAGATAGCTCAGCTGAG 59 12167700 12167718 CACTCCCAAGTACAGACAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Khc FBgn0001308 FBtr0087184 1 1 1 87 2R 12157150 12157306 TGTGACAAACATGAACGAG 58 12157081 12157099 TTTCTTCTGGTTCTCCAGG 58 NA Drosophila melanogaster 50 CG8443 FBgn0034087 FBtr0087242 2 1 1 97 2R 12079642 12079661 TGGGAATGTCTCTTAAGCTG 59 12079720 12079801 GATGTTGCTATCGATCAGTG 58 NA Drosophila melanogaster 50 sli FBgn0003425 FBtr0087304,FBtr0087302,FBtr0112831 3 3 5 138 2R 11773781 11773799 GACCGTGATATACGAGACG 59 11772978 11773607 ATTGTTGGAGATGTCCAGTC 59 NA Drosophila melanogaster 50 fus FBgn0023441 FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343 2 4 6 110 2R 11555363 11559507 CAACTGGACAGATCGTAGG 59 11555271 11555290 TGTTATTGGTGACACTCGAG 59 NA Drosophila melanogaster 50 CG8468 FBgn0033913 FBtr0087534,FBtr0087533,FBtr0087532 3 3 3 73 2R 10116746 10116764 GGATTCCTGATGCTCTTCC 59 10116918 10116936 GTCATCACATAGAGGCCAC 59 NA DesignNoJunction Drosophila melanogaster 50 RN-tre FBgn0020620 FBtr0087605 1 1 3 108 2R 9876011 9876030 AGCAAGTCATAACAGATGTG 57 9874961 9875880 ATTGAGTATCCATCACCCG 58 NA Drosophila melanogaster 50 CG6543 FBgn0033879 FBtr0087643,FBtr0087644 2 2 2 168 2R 9740744 9740762 TTAACACGGCTTACGAGAC 59 9740529 9740547 CTGGCTGGGATTGATTAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG17034 FBgn0033837 FBtr0087708 3 1 4 95 2R 9306558 9306576 TGTTTAAGACACTGACGGA 58 9303452 9306499 TTTCCGTGAATGAAGATCG 57 NA Drosophila melanogaster 50 Nrk FBgn0020391 FBtr0087728 2 1 1 113 2R 9048799 9048876 ATATACCCATGTGTCCGGA 59 9048953 9048971 AACCTATTCCAGCCAAGAG 58 NA Drosophila melanogaster 50 Nrk FBgn0020391 FBtr0087728 3 1 1 114 2R 9048799 9048876 ATATACCCATGTGTCCGGA 59 9048953 9048972 AAACCTATTCCAGCCAAGAG 59 NA Drosophila melanogaster 50 CG3814 FBgn0025692 FBtr0087814,FBtr0087813 3 2 2 138 2R 8763437 8763613 TATTGATGTGCCAATTGCTG 59 8763256 8763274 ATACAGATCATGGTCACGA 57 NA DesignRelaxed Drosophila melanogaster 50 Nacalpha FBgn0086904 FBtr0087860,FBtr0087858,FBtr0087859 1 3 3 69 2R 8647772 8647790 GAAGATCATGCTGAAGCTG 58 8647721 8647739 CTTCGACTTCCTGATCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL18 FBgn0026741 FBtr0087852 2 1 1 78 2R 8644140 8644158 GAATACGTGATCAACCGGA 59 8644199 8644218 TCTCCAGATGATAGCCTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 stil FBgn0003527 FBtr0087825 1 1 1 84 2R 8458650 8458668 CTCGAAGATTCCACTTCAG 57 8458716 8458852 AGATGTTTGAGACGTTCTG 57 NA Drosophila melanogaster 50 CG13168 FBgn0033705 FBtr0087998,FBtr0087999 3 2 2 98 2R 8142679 8142697 GATGACCAAGAAGCATCTG 58 8142809 8142829 CTGGTATCGTACTTCTTAAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG8862 FBgn0033690 FBtr0088012 2 1 1 60 2R 8065823 8065841 CACCTTTGGAACTGTTTCG 59 8065781 8065802 CAAGCTTACATTGTTCTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8321 FBgn0033677 FBtr0087975 3 1 1 99 2R 7923203 7923286 GTTCCAAGAAACGTTTCCG 59 7923348 7923367 AAGTACATGAAGACCGTGAC 59 NA Drosophila melanogaster 50 S2P FBgn0033656 FBtr0088063 1 1 1 113 2R 7730976 7730995 ACTACATCACAACCCTTGTG 59 7730815 7730903 GGCAGAAGATGAACTTTATTCC 59 NA Drosophila melanogaster 50 en FBgn0000577 FBtr0088095,FBtr0088096 2 2 2 255 2R 7413974 7413992 GAGATTCCGGAATGGAGTC 59 7412324 7412342 GTCAGATAGCGATTCTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG13213 FBgn0033609 FBtr0088180,FBtr0088178,FBtr0088179 1 3 3 80 2R 7174159 7174232 CAGGAAATTATGGACTCACCT 59 7174099 7174118 TATGATGCGGGATTCATCTG 59 NA Drosophila melanogaster 50 CG9062 FBgn0033607 FBtr0088181 1 1 1 80 2R 7169386 7169475 GTCATCTTTAGTGAAGTGGGT 59 7169326 7169344 CAGGGTACTTTCGCTATCG 59 NA Drosophila melanogaster 50 CG18004 FBgn0033566 FBtr0089729,FBtr0089728 1 2 3 80 2R 6773587 6773605 CTATTGAGTCCGGAATGCA 59 6773647 6773725 ATTGGGATAACACTTAGAGGG 58 NA Drosophila melanogaster 50 CG18004 FBgn0033566 FBtr0089729,FBtr0089728 1 2 3 80 2R 6773587 6773605 CTATTGAGTCCGGAATGCA 59 6773647 6773725 ATTGGGATAACACTTAGAGGG 58 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0089342,FBtr0089349 2 2 26 187 2R 6419759 6419778 TTGAGGATTTGACACTGGAC 59 6408769 6419548 GTCGTACTTCAGGTCTTGG 59 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 1 9 9 149 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349137 6349157 GACAGCATCGAATACAAACTG 59 NA Drosophila melanogaster 50 Prx2540-1 FBgn0033520 FBtr0088261 1 1 1 104 2R 6312548 6312629 CAACGTTGACGAGATTCTG 58 6312760 6312778 ATCATGACCTTAGTGCCAG 59 NA Nonspecific Drosophila melanogaster 50 Gr47a FBgn0041242 FBtr0088352 3 1 1 60 2R 6249974 6249993 ACACATGTCCTATAGCACTG 59 6250016 6250034 ACCAATCGTCAGAACAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 2 9 9 91 2R 5738884 5738970 GAAGCCGTTAAGGAGATCC 59 5738811 5738829 ATATCGATGACAGTTCCGG 58 NA Drosophila melanogaster 50 CG8029 FBgn0033393 FBtr0088587,FBtr0088588 2 2 2 212 2R 5095662 5095680 CAAGACCTACTACACCAGC 59 5095928 5095946 TTGCTGATAGCAGCTATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8046 FBgn0033388 FBtr0088620 3 1 2 182 2R 5051972 5052051 GAAACAAAGAGAATTGAGGAGC 59 5051755 5051773 AATGAGATACTGAAGGCCG 59 NA Drosophila melanogaster 50 stmA FBgn0086784 FBtr0088715,FBtr0100111,FBtr0088716 3 3 3 114 2R 4618187 4618266 TGTTTATCCTCGGAATCCAG 59 4618092 4618110 CTAACACGCGAGATTAGCA 59 NA Drosophila melanogaster 50 CG2906 FBgn0033240 FBtr0113051,FBtr0113052 2 2 2 80 2R 3845209 3845283 GACGTTTCACCAATATTTCCAG 59 3845323 3845342 TGCTGGTTACTTAGAGTTCG 59 NA Drosophila melanogaster 50 CG18812 FBgn0042135 FBtr0088936,FBtr0088935 3 2 3 189 2R 3607496 3613207 GAGCATCAGGAAAGATACGA 59 3607264 3607285 GCTTAATCAGATATAGCAAGGC 59 NA Drosophila melanogaster 50 CG18812 FBgn0042135 FBtr0088936,FBtr0088935 1 2 3 185 2R 3607493 3613203 ATCAGGAAAGATACGAGCG 59 3607264 3607285 GCTTAATCAGATATAGCAAGGC 59 NA Drosophila melanogaster 50 CG1845 FBgn0033155 FBtr0089021 2 1 1 206 2R 3162388 3162602 CATCAATAGAAGAACCGCC 58 3162200 3162218 GACAGGACGTGATTCAGAG 59 NA DesignRelaxed Drosophila melanogaster 50 vimar FBgn0022960 FBtr0086183,FBtr0086182 3 2 2 160 2R 2865101 2865208 TCCTTACTGGTGATGACTC 57 2864959 2864977 CTCCACAAAGTAGATGCAG 57 NA Drosophila melanogaster 50 scarface FBgn0033033 FBtr0086061,FBtr0086060 3 2 2 136 2R 1566837 1566856 CATTATCCGACTCGAAAGAC 58 1565503 1566741 CCTCTTCATGTATAGATAACGC 58 NA Drosophila melanogaster 50 CG30437 FBgn0050437 FBtr0086065 1 1 3 115 2R 1328564 1341070 TAGTCGATGAAGTTGTGCC 59 1341149 1341167 GTATTCGGGAGGAATGTCG 59 NA Drosophila melanogaster 50 snRNA:U2:34ABc FBgn0041720 FBtr0091789 1 1 1 61 2L 13244528 13244549 CCTTATGGCTAAGATCAAAGTG 58 13244488 13244509 GAGGAACTATCAGATGTTAAGC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17490 FBgn0040009 FBtr0111256,FBtr0111258 2 2 4 180 2L 22433045 22440281 CATACAATAATGAGAAGGTGGG 58 22440422 22440440 CTCATATAGTCAGCGGGTG 59 NA InUTR Drosophila melanogaster 50 CG2225 FBgn0032957 FBtr0085918,FBtr0085914,FBtr0085915 3 3 5 114 2L 21671386 21672303 CTAAGTCGCAAGAACATGTC 58 21671291 21671309 TTAGATTCTCAGCCGTACC 58 NA Drosophila melanogaster 50 l(2)k14505 FBgn0021856 FBtr0081482 1 1 1 113 2L 21261706 21261781 TCTTCCAGTACGATGACGA 59 21261858 21261876 TGTTCATGGTCTTCTGCAG 59 NA Drosophila melanogaster 50 CG9257 FBgn0032916 FBtr0081465 2 1 1 60 2L 21103556 21103575 TCAAGGGAGATATCTCCCAG 59 21103598 21103616 TTAATCCTCTCAGTCGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33317 FBgn0053317 FBtr0089856 1 1 1 72 2L 20901387 20901405 AAGCCGACAAAGATTACCC 59 20901441 20901459 CTTTGTTACGATAGCGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Oseg5 FBgn0032891 FBtr0081451 1 1 1 80 2L 20834581 20834715 GAGAAAGATTACCTTCTGTGGT 59 20834522 20834541 CCAGGAGAGGTTGAATATGG 59 NA Drosophila melanogaster 50 vls FBgn0003978 FBtr0081347 1 1 1 95 2L 20064569 20064641 CAGTTATTAATCAATGGGCCC 59 20064494 20064512 GTAGATGAACTCATGGCCC 59 NA Drosophila melanogaster 50 CG10628 FBgn0032818 FBtr0081323 1 1 1 106 2L 19758029 19758047 AATAGCAGATGTGGGTCTC 58 19757883 19757959 TGGTGGTAAAGGGATAAGC 58 NA Drosophila melanogaster 50 CG10263 FBgn0032812 FBtr0081265 3 1 3 215 2L 19581472 19581490 ATCAATCACAGACATGTGG 57 19581169 19581190 CGGTATACTACCAATACTACCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10237 FBgn0032783 FBtr0081207,FBtr0081209,FBtr0081208 3 3 3 93 2L 19437120 19437677 GTCTTCTAGAAGCGGAGAC 59 19437045 19437063 CTTTCCGGGTAATACTTGC 58 NA Drosophila melanogaster 50 brat FBgn0010300 FBtr0081159,FBtr0081158 1 2 3 124 2L 19166350 19168104 GCAGTAAAGCTGTTACTCC 58 19168192 19168210 TACGATTCAATCGAGTTCG 57 NA InUTR Drosophila melanogaster 50 CG10700 FBgn0032754 FBtr0081171 3 1 1 60 2L 19077845 19077866 GGAGTGGTATAAACATCAATCC 58 19077806 19077824 TTAGTCTGCAGAAAGTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6412 FBgn0032646 FBtr0080994 3 1 1 64 2L 17499589 17499607 AATATGACAAGGACAAGCC 57 17499543 17499561 ATACTCCTGGTGAATCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0080978,FBtr0080977 2 2 6 143 2L 17394476 17398601 CAATTCGGCTTATACAGATCTC 58 17398705 17398860 TAATCATAAGATGCGCGAC 57 NA Drosophila melanogaster 50 beat-IIIa FBgn0032627 FBtr0080961 3 1 1 191 2L 17170065 17170143 ATGAAGTTAAAGTGCGTGG 58 17170297 17170316 AATATTAGCTAGGCGTTCCT 58 NA Drosophila melanogaster 50 CG15136 FBgn0032625 FBtr0080954 3 1 1 62 2L 17047431 17047449 ACTGGAGTTTGACGAAGTC 59 17047387 17047405 CCTAGCTTGGGATCATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080898,FBtr0080895,FBtr0080904,FBtr0080899 1 4 13 91 2L 16769208 16769226 AAGATATGGCCGACATGAC 59 16769281 16770465 GGAGTAGGTGTAGATGAGC 58 NA Drosophila melanogaster 50 Idgf1 FBgn0020416 FBtr0080860 1 1 1 60 2L 16445564 16445585 TGTTCTACTACAAGGACATCAC 59 16445605 16445624 AGGAGAATCTTCAGTTGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CaBP1 FBgn0025678 FBtr0080837 1 1 1 61 2L 16355998 16356016 TGATGTCATCGAACTCACC 59 16355955 16355973 ATATGTCGTCGGAGTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gli FBgn0001987 FBtr0080769,FBtr0080765,FBtr0080768,FBtr0080767 3 4 5 84 2L 15760332 15760410 GGATTACAGAACCTACACGT 59 15760267 15760286 ATTTCTGCCTGGATAGTTGG 59 NA Drosophila melanogaster 50 Ance-3 FBgn0032536 FBtr0100327 2 1 1 95 2L 13916555 13916632 ATTGGATAGGTATAATCGCCTG 59 13916688 13916706 TGAAGATCGCACTGAAAGG 59 NA Drosophila melanogaster 50 CG9932 FBgn0032469 FBtr0089956 2 1 1 100 2L 13029631 13029734 GCCAAAGACGTATTAAACCT 58 13029550 13029569 ATCTCCGAGATCTGTTTCTC 58 NA Drosophila melanogaster 50 ACXC FBgn0040508 FBtr0080413,FBtr0100494 2 2 2 80 2L 12914444 12914464 GCCAAGTCAATCATCAATGAC 59 12914503 12914634 GGTGAGTTTAAGTTAATGCCAC 59 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090023,FBtr0090018 1 2 17 196 2L 12726933 12726951 TATATCAAGAGCGTTGGCA 58 12727111 12729197 AAGTACGAGGTAACTTGGC 59 NA Drosophila melanogaster 50 bru-2 FBgn0043904 FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351 2 4 4 138 2L 12385726 12389193 ATTGGAGCTATAAAGGCCC 59 12389295 12389313 TATTGATGCCACAGAATGC 58 NA Drosophila melanogaster 50 bru-2 FBgn0043904 FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351 2 4 4 138 2L 12385726 12389193 ATTGGAGCTATAAAGGCCC 59 12389295 12389313 TATTGATGCCACAGAATGC 58 NA Drosophila melanogaster 50 CG16996 FBgn0032412 FBtr0080334 2 1 1 60 2L 12109968 12109987 CGTACTTCGTGATCAATGAC 58 12110009 12110028 ATCATTCCGATGTCATAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5322 FBgn0032253 FBtr0080042 2 1 1 84 2L 10454855 10454968 GGACAAACTTATCAAGTACGTC 59 10454792 10454810 AAGATAACACGAGGGTGTG 59 NA Drosophila melanogaster 50 CG33303 FBgn0053303 FBtr0080052 3 1 1 61 2L 10374454 10374472 CAATTTGGTCGAAAGCCAC 59 10374411 10374430 TAGAAGTCTTCGAGAAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13124 FBgn0032156 FBtr0079902,FBtr0079903 3 2 2 98 2L 9903932 9904013 ACTTTCAGAGATTGAGTGCT 58 9903853 9903872 ACCAGACTCATGAGTAACTC 58 NA Drosophila melanogaster 50 jp FBgn0032129 FBtr0113030,FBtr0079861,FBtr0079860 2 3 3 86 2L 9549654 9550211 AGGTTAAGGACTGGTTTGTG 59 9549587 9549607 GCATGTAGACAAATAGAAGCG 59 NA Drosophila melanogaster 50 CG9525 FBgn0032080 FBtr0079786 3 1 1 60 2L 8961802 8961821 GGCAGAGGATCTACAATCAG 59 8961761 8961780 TGGTGCATATGTCTTAGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9510 FBgn0032076 FBtr0100480,FBtr0100481 3 2 2 83 2L 8940309 8940327 CCTACAGACGATTCAGGTC 59 8940187 8940262 AGATAGTAGGCCCAGTCAG 59 NA Nonspecific Drosophila melanogaster 50 CG12438 FBgn0032065 FBtr0079732 2 1 1 60 2L 8752952 8752970 TACATCAGCTTCGAGTACC 58 8752994 8753012 TATAGAGCACTATGGCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9289 FBgn0032058 FBtr0079751 2 1 1 61 2L 8682131 8682149 GATGTTAAGAATGGCACCT 57 8682019 8682106 ATAGTGCTGCAAAGATCGA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Chrac-14 FBgn0043002 FBtr0100267 3 1 2 78 2L 8440913 8440931 AAAGACTGTAGATCCGGAG 58 8441065 8441083 CTGCAGTTCTTCTGAGGTC 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG31901 FBgn0051901 FBtr0079607 1 1 1 81 2L 8354738 8354756 AGCACTTCAACTTCTTCCC 59 8354801 8354892 AACCACGGTTTAACTCTCC 59 NA Drosophila melanogaster 50 Snx6 FBgn0032005 FBtr0079631 1 1 1 105 2L 8218498 8218581 TTTCAAGAAGAGCCTCGTC 59 8218411 8218429 TCAGGCAATCTCTTTGAGC 59 NA Drosophila melanogaster 50 CG31606 FBgn0051606 FBtr0079578,FBtr0079577 3 2 2 60 2L 8148004 8148022 CCAACTCTAGTCGGATCAC 59 8148045 8148064 GGAAATGGTTTAGAGGTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Snoo FBgn0085450 FBtr0112719,FBtr0112721,FBtr0112718 1 3 5 105 2L 7975255 7975273 CCAGATCATCCTCGATCAG 59 7896734 7896752 GTCATCCATGAGCATTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7144 FBgn0025687 FBtr0079495 1 1 1 110 2L 7793320 7793516 TTCAGTCGGCTATTATCGC 59 7793228 7793246 AACTTCCCTCCATCTTGTG 59 NA Drosophila melanogaster 50 CG14538 FBgn0031943 FBtr0079484 1 1 1 60 2L 7756733 7756751 TCCCATCATTGTCATCCAG 59 7756775 7756793 AACGTTATCACTGCTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TepII FBgn0041182 FBtr0079514 1 1 5 99 2L 7698087 7698737 CCTTACAACACTGAAGATTCG 58 7698008 7698026 CTTCTGCAAAGTTCGTTCG 59 NA Drosophila melanogaster 50 Wnt4 FBgn0010453 FBtr0089291 1 1 1 185 2L 7256591 7256609 ACTTGCTGGAAGAAGATGG 59 7256211 7256229 CAAATAGTACAGCGTGGTG 58 NA DesignNoJunction Drosophila melanogaster 50 Ndae1 FBgn0031899 FBtr0079410,FBtr0079411 3 2 2 92 2L 7229715 7229736 ATATACGACTGTGTCTGTACAC 59 7229590 7229665 ATTGTAGGACTCACAAGAATCC 59 NA Drosophila melanogaster 50 sip2 FBgn0031878 FBtr0079360,FBtr0079357,FBtr0079359,FBtr0079358 2 4 5 86 2L 6961944 6961962 TCAATGGAATCGATTCAGC 57 6961812 6961830 GAGTTCGTTCATCAACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11329 FBgn0031848 FBtr0079319 3 1 1 71 2L 6677057 6677075 AATCTACCTAGGTCCACGT 59 6677004 6677022 TTTATGTTATCGGCGTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13984 FBgn0031796 FBtr0079247 3 1 1 78 2L 6309004 6309022 ATTCGTTGTCTACAAGGCA 59 6309061 6309082 GAGATCATCGTACTTATCATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9107 FBgn0031764 FBtr0079226,FBtr0079225 3 2 2 60 2L 6024121 6024139 GAACCCTTCTCCAACACTC 59 6024079 6024097 TCTCGAACACTATGTAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gpdh FBgn0001128 FBtr0079147,FBtr0079148,FBtr0079146 2 3 3 106 2L 5947158 5947244 GGTCTGGAGGACAAATTCC 59 5947314 5947332 ATATGCTCAGGGTGATTGC 59 NA Drosophila melanogaster 50 obst-E FBgn0031737 FBtr0079163 1 1 2 125 2L 5765983 5766001 AATCAGTGCTCTATTGTGC 57 5764187 5764205 TTCTTGCACTCAATGTAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14040 FBgn0031676 FBtr0079009 3 1 1 91 2L 5053325 5053343 TTGATAGTCTCCACCTGTC 57 5053456 5053474 TACAAGCCCAATACATTCC 57 NA DesignNoJunction Drosophila melanogaster 50 eIF-3p40 FBgn0022023 FBtr0079031,FBtr0079030 3 2 2 251 2L 5051656 5051674 ATAACAAGTACCAGCAGGT 58 5051357 5051375 TGATGAAGAGTTTGGCCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11926 FBgn0031640 FBtr0077387 1 1 1 93 2L 4851482 4851500 TTGATCTGAGGAGACTGCT 59 4851557 4851629 AAGATGTTGTTGGACACCT 59 NA Drosophila melanogaster 50 ine FBgn0011603 FBtr0077448,FBtr0077446,FBtr0077449 3 3 4 142 2L 4473965 4474339 AGTCTCAGGTTATCTTCCAG 58 4473842 4473860 GGAAATGATAGGAACTGCC 57 NA Drosophila melanogaster 50 CG34394 FBgn0085423 FBtr0112638,FBtr0112640,FBtr0112641,FBtr0112639 1 4 4 80 2L 3364933 3365438 GTCTGATTGTGGACTACTCG 59 3364872 3364890 AGACGTAGTTCTGTGACAC 58 NA Drosophila melanogaster 50 CG15404 FBgn0031512 FBtr0077578 2 1 1 62 2L 3174171 3174190 CTGGGTACTTACATGTCCTG 59 3174215 3174233 TTATTTCTCTTGTCGCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3165 FBgn0031484 FBtr0077642 1 1 1 60 2L 2977854 2977872 ATGTGCAGGAAATCATTCC 58 2977896 2977914 TCCTTGAGGCAAGTTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 syt FBgn0004242 FBtr0077727,FBtr0077728 3 2 4 81 2L 2793377 2793395 ATGGAAAGGGTAAGAAGGG 58 2793251 2793333 TCCTCCATATCAGGTTTCTC 58 NA Drosophila melanogaster 50 CG9960 FBgn0031454 FBtr0100383 1 1 1 74 2L 2758711 2758729 GATGACATTCTTTCGCCTC 58 2758655 2758673 TTTGATAATCTCCTCCGGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2843 FBgn0031452 FBtr0077712 2 1 1 119 2L 2745435 2745453 GAGTGCTGAGCAATAATGG 58 2745598 2745616 AGGACTTGTCGATCTTACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7082 FBgn0031401 FBtr0077836,FBtr0077838,FBtr0077837 3 3 4 97 2L 2223617 2223708 GCCAAGATAAGATTACGAGAC 58 2223767 2223785 TTGATAAGCAGAGCTCGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG11455 FBgn0031228 FBtr0078117 1 1 2 112 2L 155730 155748 GATCTCCGACTTTCAGGAG 59 155897 155915 ATTCTTGTCCCTTACGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 dbr FBgn0067779 FBtr0078100 2 1 1 108 2L 67924 67942 CTGCAAATCTTGTTACCGC 59 68011 68093 ATTCTTAGGCAGTGTACTAAGG 59 NA Drosophila melanogaster 50 CG14617 FBgn0031191 FBtr0077353 2 1 5 90 X 21887459 21888899 ATTGCTTCAACAGAACAGC 58 21888951 21888971 GAATTTGTCTAGAAAGCTCCG 59 NA InUTR Drosophila melanogaster 50 CG1486 FBgn0031174 FBtr0077190 2 1 2 194 X 21195591 21195747 CTTCCAGTATTCGATCGGG 59 21195905 21195923 ACTTAAGAATGTCGGAGGG 58 NA Drosophila melanogaster 50 l(1)19Ec FBgn0001560 FBtr0077285 1 1 1 63 X 20753527 20753545 GATGGTCAATGGTCAAACG 59 20753482 20753500 AGTTATCTGGGTTGACGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp19a FBgn0031109 FBtr0077300 1 1 1 125 X 20286980 20286998 CCAAGTATCCGAAGGTCAG 59 20287087 20287180 TTCCCTTCTTGATTGCCTG 59 NA Drosophila melanogaster 50 CG12703 FBgn0031069 FBtr0074795 1 1 1 80 X 19652301 19652388 CGTGACCAGATCATTTATCCA 59 19652430 19652448 CAGGTAGTGCATGAGATCC 59 NA Drosophila melanogaster 50 CG32537 FBgn0052537 FBtr0074687 3 1 1 192 X 19170294 19170312 GCACAAGTTTGTATGTGGG 59 19169371 19169449 GCATTTACGCTAATTGGCA 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7874 FBgn0030999 FBtr0074672 1 1 1 84 X 19107687 19107705 CCGAGTGAGGAAACTACTG 59 19107753 19107771 TCTCTACATCTCCAGAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6873 FBgn0030951 FBtr0074607 2 1 1 60 X 18633528 18633547 TATGAGTATCAGCACCAGTG 58 18633487 18633506 GGATTAGCTTCTCCTTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GS FBgn0030882 FBtr0074496,FBtr0074498 3 2 3 111 X 17785909 17785928 ATCAATACGATAGCATCGGG 59 17791255 17791418 TATCCGGCATATTGTGCAG 59 NA Drosophila melanogaster 50 CG9609 FBgn0030787 FBtr0074356 1 1 1 60 X 16680530 16680608 ACACAGGGATTAAGAAGCA 58 16680488 16680507 ACAATCGAGTACGTCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Scamp FBgn0040285 FBtr0074080,FBtr0074079 2 2 2 189 X 15343793 15343811 GTAGAATTCCCATGTCCGG 59 15343426 15343444 TTCGTTGAGTTGATCTGCA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9009 FBgn0027601 FBtr0073972 3 1 1 77 X 14829955 14829973 GGATGACTTCATGAGGTCG 59 14829466 14829915 ATCATAAAGAGGGCAATTGG 57 NA DesignRelaxed Drosophila melanogaster 50 CG9519 FBgn0030589 FBtr0073984 2 1 1 60 X 14750259 14750277 CTCAATGGTGATTAGCCAG 57 14750217 14750236 ATAGATCTCGAGCATATCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34346 FBgn0085375 FBtr0112555,FBtr0112554 1 2 2 239 X 13779252 13779353 GAATCCCTCAAGGTCAAGG 59 13779031 13779049 AGATGTTGCTGAGGTTGAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Pde9 FBgn0052648 FBtr0073701 1 1 1 80 X 12688609 12700942 CGACACCTTCAATAACATTCG 59 12688549 12688568 GTGAGGATTTCATTGTGACG 59 NA Drosophila melanogaster 50 CG11245 FBgn0030388 FBtr0073646 3 1 1 179 X 12341652 12341670 GGATTCATCCAATTCCAGC 58 12341811 12341964 TCTAACATCTTCTTGGGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32694 FBgn0052694 FBtr0071412,FBtr0071411 1 2 4 108 X 9898694 9898712 CAATGATCTCCAGCTCTCC 59 9898782 9899196 GAACAGATTACTCTTGTTGCG 59 NA Drosophila melanogaster 50 CG1468 FBgn0030157 FBtr0071388 3 1 1 74 X 9772671 9772692 CGATGATGACGAATTAAACTGG 59 9772726 9772868 TTCACTACATCTCCACACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15343 FBgn0030029 FBtr0071178 2 1 1 77 X 8166781 8166799 GATGATCTCAAGGCAAAGC 58 8166651 8166740 GGTATAGCTTGCTGGTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dec-1 FBgn0000427 FBtr0071147 3 1 3 61 X 7764241 7764259 AGGTAGATGAGATGTTGCG 59 7764014 7764033 TTATTGTCTGAAATGCGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 dec-1 FBgn0000427 FBtr0071146,FBtr0071145 1 2 3 106 X 7764290 7764311 CCAGTCAATTCGTATCAAAGTC 59 7764007 7764223 TTCGGGTTTATTGTCCTGG 59 NA Drosophila melanogaster 50 CG32721 FBgn0027553 FBtr0071077 2 1 1 104 X 7620818 7620836 CATATGAGGATCCCTTCCT 57 7620670 7620688 AGATGAACTCGTCGAAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14441 FBgn0029895 FBtr0070959 3 1 1 103 X 6607700 6607783 AAATAATCGCAAACTTGGGC 59 6607848 6607867 CCTCTCGCAATATTAACTGC 58 NA Drosophila melanogaster 50 Ca-alpha1T FBgn0029846 FBtr0112953,FBtr0089393 3 2 2 80 X 6024644 6024665 GACATAATGTATTACGTGCAGG 59 6022641 6024605 GAACGAACCAATCACAATCAG 59 NA Drosophila melanogaster 50 Act5C FBgn0000042 FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822 1 4 4 111 X 5797605 5797623 AGGATCTGTATGCCAACAC 59 5797698 5797716 TTGATCTTCATGGTCGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0334 FBgn0028325 FBtr0070708,FBtr0070710,FBtr0070709,FBtr0070711 2 4 4 150 X 4598141 4598234 ACAACAACTACGGAATGGG 59 4598348 4598366 TTCACATAGTTGATGGCGA 58 NA Drosophila melanogaster 50 CG3598 FBgn0025645 FBtr0070552 1 1 1 60 X 2831559 2831577 GATGGTTAACCGGGATCAG 59 2831601 2831619 CTCGATCTCGATAATGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tko FBgn0003714 FBtr0070459 2 1 1 109 X 2336487 2336505 CACAACATTGTACTGTGCC 59 2336396 2336414 TATTGGCTCTTCTTGACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mip130 FBgn0023509 FBtr0070315 2 1 1 60 X 1812458 1812478 CTATCAAACGAATAACCTCGG 58 1812500 1812518 GTTGGTAAGATTTGCCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 png FBgn0000826 FBtr0070234 2 1 1 60 X 1250747 1250765 CTACCAGACATCTTCCACC 59 1250705 1250725 TGAAGTAATGCTTGTAGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32817 FBgn0052817 FBtr0070077 3 1 1 78 X 373964 374066 CTGCGTGACTTTATTTGGT 58 374108 374126 CTAGCTGAGGAACATCTGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CR41608 FBgn0085818 FBtr0114276 1 1 1 60 U 4448066 4448087 GATAGGGACAATATCATATGCG 58 4448108 4448126 CAAGAGTAGCCAAACACCA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18160 FBgn0039980 FBtr0113765 2 1 1 111 U 376563 376581 TTCCATATCCACGATTGCC 59 376707 376725 TTGCATGGTATTCCCTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41316 FBgn0085610 FBtr0114054 1 1 1 60 U 316708 316728 CATAGTAAAGATAGCAGGTGG 57 316668 316686 CTTCTTTAGGTGTGCAACG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 RfaBp FBgn0016724 FBtr0089188 1 1 1 104 4 1093995 1094070 TTATTGATGGCATACGCAC 58 1094138 1094156 CAACAATGGACTTCTGAGC 58 NA Drosophila melanogaster 50 myoglianin FBgn0026199 FBtr0089093,FBtr0089092,FBtr0089095,FBtr0089094 3 4 4 87 4 713107 713125 ATTCTAATAAAGGGCGCAG 57 712973 713057 CTATGTGAACAGTCAATGGA 57 NA Drosophila melanogaster 50 CG2219 FBgn0039889 FBtr0089153 3 1 1 81 4 199499 199574 AAGTTATACACGTTGCACTG 58 199437 199456 TTCCATCTTAGCTTCTTCCA 58 NA Drosophila melanogaster 50 CR33328 FBgn0053328 FBtr0082858 2 1 1 65 3R 9464689 9464708 CCAGTAGAGCCACTATATCC 58 9464643 9464661 GATTGCCTGATTGATTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12068 FBgn0039695 FBtr0085481 3 1 1 60 3R 25620670 25620688 ACTGGATCTATTGGAACCC 58 25620712 25620730 CAGTATGTCCCTTAGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Spase12 FBgn0040623 FBtr0085435 1 1 1 236 3R 25316613 25316631 CACGTTCTTCGGAATTGTG 59 25316339 25316357 TCCCACTGATTCTACTGCT 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG14529 FBgn0039609 FBtr0085328 2 1 1 60 3R 24699161 24699179 TCTACTGGGTGTCTATGTG 57 24699201 24699221 CAACTGTAGGCGTTTAATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr98a FBgn0039520 FBtr0085184 1 1 1 96 3R 23314953 23314973 CAGCTCTAAGAAGTCTAAACC 57 23315031 23315105 AACTTTCCCAGCATTTCTG 58 NA DesignNoJunction Drosophila melanogaster 50 GCR(ich) FBgn0029170 FBtr0085101 3 1 1 152 3R 22875872 22875890 AGAAGACTCTGGTCTACGT 59 22876006 22876024 AGATTCCTCCAGAAATGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14544 FBgn0039407 FBtr0084969 2 1 1 206 3R 21885844 21885862 CTTCGTCACCGTCTATCAC 59 21886707 21886725 TTGGTTAGCTCTTGGATGC 59 NA DesignNoJunction Drosophila melanogaster 50 Sld5 FBgn0039403 FBtr0084975 1 1 1 234 3R 21881684 21881702 ACTTCCACAAAGTAGCCAC 59 21881410 21881428 TAAATTAGCTGCGCTTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 jigr1 FBgn0039350 FBtr0084886,FBtr0113288,FBtr0084889,FBtr0084888,FBtr0113287,FBtr0084887 3 6 6 98 3R 21474749 21474768 GTACGATAGGTCAAACAAGC 58 21474829 21474919 CTTATACTGGTGGCATCGT 59 NA Drosophila melanogaster 50 polybromo FBgn0039227 FBtr0084740 1 1 1 65 3R 20626786 20626805 TGTACTCTAGTGAAGTTCGA 57 20626682 20626700 ATATGTCTCCAAAGGTTGC 57 NA DesignNoJunction Drosophila melanogaster 50 nAcRbeta-96A FBgn0004118 FBtr0084682,FBtr0084681 3 2 2 80 3R 20337250 20337270 TTTACCATGATACTCGTCTCG 59 20336932 20337208 GTGCGTAGATGGAGATCTG 59 NA Drosophila melanogaster 50 nAcRalpha-96Ab FBgn0000039 FBtr0084640,FBtr0084639 3 2 2 94 3R 20313318 20314186 GTGATCAGATCGATTTGAAGC 59 20314241 20314260 CACACTGGGATAGTACTCAC 59 NA Drosophila melanogaster 50 cav FBgn0026257 FBtr0084557,FBtr0084559,FBtr0084558,FBtr0084556 3 4 4 61 3R 20048193 20048272 AACGAGAATAACCGAGGAG 58 20048297 20048315 AAAGCTCCTTTACCTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084570,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 2 6 6 80 3R 20025044 20025062 TAAGACTATGTCCGAGCTG 58 20024921 20025000 TTGATCAGCGTAAACTTGG 58 NA Drosophila melanogaster 50 CG31148 FBgn0051148 FBtr0084441 2 1 1 96 3R 19527436 19527454 TGAGTTCAAGGACATCACC 59 19527609 19527627 AATCGAGTTTGGTCGAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 unk FBgn0004395 FBtr0084403,FBtr0084402 2 2 2 143 3R 18981726 18981807 ATACAAGTACAGGTCCACTC 58 18981602 18981620 GTCGACTTGTAGATCTCCG 59 NA Drosophila melanogaster 50 CG6954 FBgn0039000 FBtr0084300 2 1 1 80 3R 18503494 18503514 GGTGTTAAGCAATAATCGCTC 59 18503556 18503634 GTGTCCACAGAGAACTGAG 59 NA Drosophila melanogaster 50 CG5278 FBgn0038986 FBtr0084281 2 1 1 109 3R 18385410 18385430 GTGCACATTATCATGTACTCC 58 18384980 18385339 CAGAACTGGATCATCTGCA 59 NA Drosophila melanogaster 50 CG34376 FBgn0085405 FBtr0112609 3 1 2 224 3R 18283184 18285566 ATGGACATTCCCTCAATCG 59 18285752 18285772 GTTGTTGGTCACGATTATGTC 59 NA DesignNoJunction Drosophila melanogaster 50 GABA-B-R2 FBgn0027575 FBtr0084167,FBtr0084168 2 2 2 80 3R 17596862 17596942 TGTGATTAAGACTCCCACTG 59 17596801 17596819 TGTGAAACCACGAAATTGG 58 NA Drosophila melanogaster 50 CG17278 FBgn0046763 FBtr0084047 3 1 1 60 3R 16847162 16847181 AAGACCTATCGCAATCTGTG 59 16847021 16847141 GAAAGTTTGCATTCTGGAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 TotB FBgn0038838 FBtr0083973 3 1 1 123 3R 16699717 16699794 TTTGATCTGTTTCGCACTG 58 16699881 16699899 TTTGGTATTGTCGTCCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31195 FBgn0051195 FBtr0083997 1 1 1 86 3R 16585155 16585173 TATGTGAAGAAGTGGCTGG 59 16584812 16585105 TACCACACCCTTGAATTCC 59 NA Drosophila melanogaster 50 CG5180 FBgn0043457 FBtr0083903 2 1 1 61 3R 16384864 16384884 GAAGGTCTTAGAGATCACCTC 59 16384907 16384989 TGACCGCTTGTTGTATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33934 FBgn0064119 FBtr0091940,FBtr0091939 1 2 2 94 3R 15873183 15873268 CTTTCTGAATGCCAAAGCC 59 15873324 15873344 ACTTGAAGAAGGTGTACTGTG 59 NA Nonspecific Drosophila melanogaster 50 CG17193 FBgn0040571 FBtr0083838 3 1 1 153 3R 15865449 15875380 TATTACAGTGGTCACTCGT 57 15865314 15865333 AGGCGTTGATATAGTACTCC 58 NA Drosophila melanogaster 50 CG4468 FBgn0038749 FBtr0083852 3 1 1 60 3R 15740971 15740989 AATTCATCCACGGGATACG 59 15740929 15740947 CTTTATCCTTGCCAGAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11703 FBgn0038690 FBtr0083744 3 1 1 60 3R 15053221 15053239 CAAGATTTGGATCACCTGC 58 15053179 15053197 CGGATAGAAGACCATTTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3995 FBgn0038472 FBtr0083428 1 1 1 77 3R 12868431 12868451 CTGTCATCCGAACTTAATAGC 58 12868318 12868392 CTTCCAGTCCTTTAAGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acyp2 FBgn0038363 FBtr0083174 2 1 1 164 3R 11618599 11618617 TTCGAGATCTTTGGACGAG 59 11618868 11618944 CAGCCAATGTTTCATTTCC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG6136 FBgn0038332 FBtr0083108 1 1 1 62 3R 11196990 11197011 GATAGCCAAACATCAAAGAGAC 59 11196949 11196967 AGGTTGGACACCTTTATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31326 FBgn0051326 FBtr0082901 3 1 1 82 3R 10045403 10045421 TATTCCAACAATACCGCCC 59 10045282 10045358 TTGGCTTAGGATATACACCG 58 NA Drosophila melanogaster 50 CG8863 FBgn0038145 FBtr0082751,FBtr0082754,FBtr0082753,FBtr0082752,FBtr0082755 3 5 5 220 3R 9210099 9210118 TTATCAGGCATGAGATGACC 59 9210301 9210409 CTTGGGATCAAAGTCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14384 FBgn0038097 FBtr0082731 1 1 1 60 3R 8791905 8791923 AAATGGACGATGAGGAAGG 59 8791863 8791882 GACTGGATAGCATTGTACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31347 FBgn0051347 FBtr0082664 1 1 1 60 3R 8517965 8517983 ATGTGGAGTCTATTCCCGT 59 8517923 8517941 CTGTCGAAGTCCATTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha55 FBgn0005671 FBtr0082670,FBtr0082671 2 2 2 172 3R 8450715 8450735 CTGTATCTGGAGTTCTTGACC 59 8450502 8450520 TCCCTAGGGTAGAATTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 Rpt3R FBgn0037742 FBtr0082165 3 1 2 106 3R 5581288 5581354 TACAAGCAAATTGGCATCG 59 5581200 5581218 GATGCAGTTGTATGATGGG 58 NA Nonspecific Drosophila melanogaster 50 CG11033 FBgn0037659 FBtr0081970 1 1 1 186 3R 4883799 4884056 GATCTCACCGTAGCTTTCC 59 4884206 4884224 TCATCTGCAGGTTCTTCTG 59 NA Drosophila melanogaster 50 Pif1B FBgn0046874 FBtr0091717,FBtr0091716 2 2 2 61 3R 4600939 4600957 TTGATATGCATGCCATGGA 59 4600828 4600915 CTTAAGGTGCTTTGGTTTCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG18748 FBgn0042105 FBtr0113344,FBtr0113345 2 2 2 190 3R 3612901 3612979 ACTCTGTTTCACAGGTTCC 59 3612729 3612747 TAGTCCAACCTTCACTTCG 58 NA Drosophila melanogaster 50 Sodh-1 FBgn0024289 FBtr0081627 3 1 1 123 3R 2879971 2880042 GCTACTGCAATGACTATGC 58 2880129 2880147 TTTCGTGACGTTTCAAACG 59 NA Drosophila melanogaster 50 ftz FBgn0001077 FBtr0081625 3 1 1 86 3R 2690789 2690807 ATCATCGAATTGTGACAGC 58 2690857 2691022 AGTCTTTGCAATCTGATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdep FBgn0051536 FBtr0078840,FBtr0110958 2 2 2 87 3R 748468 748487 CTCTTATCGATCCAGTGCTG 59 748535 748677 AACAAATACCTGGTGTACTCC 59 NA Drosophila melanogaster 50 jim FBgn0027339 FBtr0078582,FBtr0100184,FBtr0078581 2 3 3 122 3L 22792357 22792375 CCCTCTTACTTCAAGGACG 59 22792193 22792211 CTTAAACTCCTTGTCGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7369 FBgn0037188 FBtr0078530 2 1 1 108 3L 22739972 22740059 AGCGAGATAGTCAAGTACC 58 22740128 22740149 CCATCAGACTATTAAAGTTGCC 59 NA Drosophila melanogaster 50 CG7202 FBgn0037086 FBtr0078393 2 1 1 117 3L 21485775 21485793 TAAGTTTCTTGTTCCTGGC 57 21485287 21485696 TCTGTGTATAATTCGACTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6049 FBgn0037081 FBtr0078400,FBtr0078399,FBtr0078398 1 3 3 80 3L 21414146 21414217 GTTATCTATGATCGCCATCCT 59 21414086 21414105 CATTTGAATGACGAGGTCAG 58 NA Drosophila melanogaster 50 CG3288 FBgn0037030 FBtr0078262 2 1 1 61 3L 20829570 20829589 TACGGTCAGTTTGGATTCAG 59 20829613 20829695 TATACGCATCACCGAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pitslre FBgn0016696 FBtr0078249,FBtr0078248,FBtr0078250,FBtr0078247 1 4 4 66 3L 20764898 20764916 AAATGGTCAATTCGTCTGG 58 20764946 20764964 CTGTGATAGTGCACATCGT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG6663 FBgn0036969 FBtr0074843 2 1 1 81 3L 20315021 20315040 AACTGATGTAGAAGTCAAGC 57 20315084 20315159 TAGTCCAGCGTCATATACG 58 NA Drosophila melanogaster 50 CG3961 FBgn0036821 FBtr0075079,FBtr0075077,FBtr0075078 2 3 3 80 3L 18872658 18872678 AGATCGAGAATATCTACACGC 59 18872548 18872618 CGATAATGCAGCTCTTTAAGC 59 NA Drosophila melanogaster 50 CG7510 FBgn0036741 FBtr0075182 2 1 1 80 3L 17619486 17619600 GCTATCCCATAGTTATGGCT 58 17619643 17619661 GTGAGATAGGAGCCATCAG 58 NA Drosophila melanogaster 50 noe FBgn0026197 FBtr0110844,FBtr0110845 3 2 2 195 3L 17393782 17393800 ACATCTAGTAACACGACGC 59 17393605 17393624 TGCCTTAAACGTCTCTATGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Mipp1 FBgn0026061 FBtr0075398,FBtr0075399 1 2 2 146 3L 16558056 16558146 ACACTTACTACCAGTTCCG 58 16557928 16557946 AATAGTCATAGGGACGCAG 58 NA Drosophila melanogaster 50 CG5157 FBgn0036575 FBtr0075490 2 1 1 60 3L 16130055 16130075 GTACGATGTAACCAAGTTCCT 59 16130015 16130036 ATATTCGAGTAGTGCTTCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7579 FBgn0036528 FBtr0075581 1 1 1 63 3L 15675467 15675485 AATCCCAGCTTACAAGTCC 59 15675344 15675362 TATACTCGTCCAACCAGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13455 FBgn0036498 FBtr0075544 3 1 1 116 3L 15490337 15490355 CTGTACGACTCCATCAGTC 59 15490503 15490521 TTGAAGTACCTTGAGAGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13466 FBgn0036456 FBtr0075619 3 1 1 126 3L 14934893 14934911 GAGCAACCGCTACTATAGC 59 14935001 14935140 CGAGATGCAGGGATATCTG 59 NA DesignRelaxed Drosophila melanogaster 50 Hsc70-1 FBgn0001216 FBtr0075761 1 1 3 106 3L 13967868 13968827 GATCTTTGTCTCAGGGTCC 59 13968895 13968915 GGGATATTATGTGGCATTGTG 59 NA InUTR Drosophila melanogaster 50 CG10738 FBgn0036368 FBtr0075805,FBtr0075804 1 2 2 81 3L 13454140 13454218 CCAACACGAGGATCTATCTC 59 13454259 13454280 AGAATTCCTCTTCTTTGGAGAC 59 NA Drosophila melanogaster 50 CG11263 FBgn0036330 FBtr0075873 1 1 1 60 3L 13000064 13000082 ACATTCGTTACCCTTTCGG 59 13000104 13000124 ATTCGATCTAGTTGCTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32113 FBgn0052113 FBtr0075922 3 1 1 80 3L 12749177 12749510 GTCATAGACATATCTAAGGTCCAG 59 12749548 12749567 TTGTCGAACTTCCTTAACCT 58 NA Drosophila melanogaster 50 CG32103 FBgn0052103 FBtr0075983,FBtr0075982,FBtr0075984 3 3 3 148 3L 12398217 12398235 ACGTACCTGATGACTTCAC 59 12398022 12398105 TCTTTGTGTTTGTACCTGC 58 NA Drosophila melanogaster 50 CG6938 FBgn0036235 FBtr0076047 3 1 1 82 3L 11980649 11980667 CAAACACTTCTGGAGGGAG 59 11980711 11980802 CGATCCTTGACAATAAACTGC 59 NA Drosophila melanogaster 50 CG34420 FBgn0085449 FBtr0112716 1 1 1 162 3L 11847480 11847500 CAATTATGCCTGGAATGTTCG 59 11845694 11847356 ATATGCTGACCACACTTGG 59 NA Drosophila melanogaster 50 CG6091 FBgn0036180 FBtr0076143,FBtr0076141,FBtr0076142 3 3 3 119 3L 11600443 11600549 ACTGCTACCAGTCAAATCC 59 11600342 11600361 TGTAGGGATCCAGAATAGCA 59 NA Drosophila melanogaster 50 CG7551 FBgn0036161 FBtr0076176 1 1 1 60 3L 11451930 11451949 GGCATCATTATCGACAACTG 59 11451972 11451990 GTATCACGGATGAGAAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12289 FBgn0036160 FBtr0076178,FBtr0076179 2 2 2 60 3L 11451022 11451040 ATTGCGACAAGTCATTTCC 58 11450980 11450998 TGATCGAGATCCAATTTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fad2 FBgn0029172 FBtr0076196 3 1 1 60 3L 11016993 11017011 GATGCGGTCTACTATTGGG 59 11017032 11017053 CATCAGTTTCCGTATACTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32054 FBgn0052054 FBtr0076314 3 1 1 137 3L 10087244 10087262 GATTCAGAGGAGTACTCCA 57 10087059 10087143 ACGAACTGAAGATCAAGAC 57 NA Drosophila melanogaster 50 Taf2 FBgn0011836 FBtr0076361 1 1 1 84 3L 9878987 9879005 CTTAACACCTGTGGTCTCC 59 9878861 9878939 ATCTAGCACAAGTTTCGCA 59 NA Drosophila melanogaster 50 CG33926 FBgn0053926 FBtr0091930 3 1 1 72 3L 9436449 9438806 AATATTAGGGCCATAGAGGAC 58 9438840 9438858 CAGTGATCTCCATGTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fhos FBgn0052030 FBtr0076577,FBtr0076578 2 2 2 82 3L 8780751 8780770 ATATGTCCGGTCTGATTTCG 59 8780810 8782051 GACACTAGAAGATCTGGATATCTC 59 NA Drosophila melanogaster 50 mthl6 FBgn0035789 FBtr0076789 2 1 1 80 3L 7480008 7480028 GTTTGTGCAGTACCTTATCTG 58 7480068 7480142 TAGTTAGTGTAACCTGCTAGG 58 NA Drosophila melanogaster 50 sgl FBgn0010851 FBtr0076938 1 1 1 175 3L 6954940 6954958 TCTTCATCTCGGTGAACAC 59 6954300 6954318 TATGTGCATGATGCTCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18586 FBgn0035642 FBtr0077026 2 1 1 89 3L 5867454 5867524 TCATTGTGGACTACATGGC 59 5867577 5867595 TTATGGCCATCGAAAGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32251 FBgn0052251 FBtr0073286 2 1 1 120 3L 4318188 4318270 GGAACATGAGAATCGAAAGAG 58 4318350 4318370 CTGATCTATTAGGCACTTGTC 57 NA Drosophila melanogaster 50 Eip63F-1 FBgn0004910 FBtr0073174 2 1 1 89 3L 3919939 3919957 TATGCTAAAGAACCTGGGC 59 3913987 3919886 TTGATTAAGCCATTGCCTG 58 NA Drosophila melanogaster 50 dro2 FBgn0052279 FBtr0073059 2 1 1 71 3L 3314459 3314477 CTTTCCGGCAAATACAAGG 59 3314512 3314530 CTCCTCCTTGCAAATACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12009 FBgn0035430 FBtr0073053 2 1 1 71 3L 3296307 3296385 TTCAGTCAGGAATCGTTCAC 59 3296419 3296437 GTATCTGGAGCTATCCTCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG14959 FBgn0035427 FBtr0073049 2 1 3 136 3L 3267287 3267442 GATCTTTCACATGTGCGAC 59 3267541 3267677 TCAGTAATCTTACGGGTGAC 58 NA Drosophila melanogaster 50 CG32299 FBgn0052299 FBtr0072898 1 1 1 62 3L 2389930 2389948 TACCATGTTCATCGATCGC 59 2389826 2389905 GGCTTGATAGTAGGTCTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1317 FBgn0035333 FBtr0072901 1 1 1 297 3L 2370381 2370402 GTATACGTTTACTACTTCGCTG 58 2370048 2370124 TTTGTAAGAGCAGCAATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dlt FBgn0024510 FBtr0072790 1 1 1 60 3L 1791124 1791142 CTACAATTACAGGGCACAG 57 1791082 1791100 GCAGATATCCACAATTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2469 FBgn0035205 FBtr0072668,FBtr0072669 2 2 2 73 3L 1307847 1307865 TGTTGAGCATTCTCAAGCA 59 1307902 1307981 TTGTTTGTAGTAGGCAAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG13889 FBgn0035168 FBtr0072586 1 1 1 90 3L 850361 850444 TTGGAGGACTACATCATGG 58 850498 850516 GATTTGTGCTCACCTTGAG 58 NA Drosophila melanogaster 50 PebII FBgn0011694 FBtr0072455 1 1 1 60 2R 21061515 21061533 CTGGACATCAACAGAAGGG 59 21061473 21061492 CATATCCAAACGAGAGTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16936 FBgn0027590 FBtr0072436 1 1 1 148 2R 20654930 20655005 GAACTACGGCCAATTAACC 58 20654800 20654818 TACTTCTCCACCAGGTAGG 59 NA DesignRelaxed Drosophila melanogaster 50 Crtp FBgn0029501 FBtr0072299 1 1 1 64 2R 20384056 20384074 AGTGTACAGCCCAATTTCC 59 20384102 20384120 AAGTCTGGTTTGTTGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13568 FBgn0034965 FBtr0113115,FBtr0113116 1 2 2 90 2R 19941626 19941644 CTCAGGTATTCTTCGTTGG 57 19941485 19941572 GACTGTTGACGTACATCTC 57 NA Drosophila melanogaster 50 CG3173 FBgn0034964 FBtr0072168 3 1 1 96 2R 19927935 19928010 GAGTTGCAGATAATAACCATGG 59 19928066 19928085 TTTCCTCAGTGATAACAGCA 58 NA Drosophila melanogaster 50 thoc5 FBgn0034939 FBtr0072147 3 1 1 83 2R 19843448 19843468 GAAATGCCTCTATGGATTCTG 58 19843512 19843587 GAACTCCATCATCTTGATCG 58 NA Drosophila melanogaster 50 CG4763 FBgn0034910 FBtr0072238 3 1 1 98 2R 19711252 19711270 TATATTCGACGACCTCCGA 59 19711076 19711191 TAGATGGTGATTCCAACTCC 58 NA Drosophila melanogaster 50 CG30417 FBgn0050417 FBtr0072041 2 1 1 60 2R 19214915 19214934 ATTACCATGAGATTGTCCGG 59 19214874 19214893 GTATTCAAACGATGCCTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3536 FBgn0034775 FBtr0071916 2 1 1 198 2R 18634396 18634414 ATACTCAATATGGGCACCG 59 18632233 18632560 AGTATTTGACTTTCTCCAGC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Gr58c FBgn0041237 FBtr0071727 2 1 1 60 2R 17864442 17864460 GAGCAGTGTTTGGATACAG 58 17864481 17864502 CATCTTCATTAAGTCGTTTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15675 FBgn0034648 FBtr0071664 3 1 2 81 2R 17553012 17553715 AAAGAACACTGGAATCTGTG 58 17553759 17553777 CATTTGTGACGAACATGTG 57 NA Drosophila melanogaster 50 Xbp1 FBgn0021872 FBtr0071571 1 1 2 187 2R 17031809 17031828 ATACTACAGAACAAGTGCGA 58 17031978 17032049 GTTGTATACCAGCCCTCAG 59 NA Drosophila melanogaster 50 CG3216 FBgn0034568 FBtr0071551,FBtr0071552 1 2 2 80 2R 16875160 16875242 CATAATGAAAGGCTTCTGTGAG 59 16875101 16875119 AGACTCTCGAGATTGTTGG 58 NA Drosophila melanogaster 50 IM14 FBgn0067905 FBtr0100038 2 1 1 109 2R 16757932 16757950 GAACTGTCTGAAGATCTGC 57 16758087 16758105 CAGTTTGAATCAACGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp57c FBgn0034509 FBtr0113099,FBtr0086292 2 2 2 80 2R 16391211 16391291 GTGGTCTCCATACAGAGTC 58 16391335 16391353 CTGGCTGATGTTATTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34197 FBgn0085226 FBtr0112390 2 1 1 60 2R 15289850 15289868 ATCATCGTTAGAACTCGCA 58 15289808 15289826 GTCGTCTTCTGTTGTACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18605 FBgn0034411 FBtr0086571 1 1 1 75 2R 14865375 14865395 GCCAATTCGCTATATTCTCTG 58 14865432 14865525 TGAGACGGAAATATTCGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17680 FBgn0062440 FBtr0086781 2 1 1 174 2R 14035293 14035311 ATAACCTAAGGATCCTGCA 57 14035137 14035155 TTCTCCTCCAGAAAGTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30323 FBgn0050323 FBtr0086800 3 1 1 60 2R 13741283 13741301 GGAGTTGAATAGCACTTGG 58 13741323 13741343 ACTTACGTAGTAAATCCTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6362 FBgn0028740 FBtr0089556 1 1 1 121 2R 13659403 13659421 AAATACCACTGGTACACGC 59 13659186 13659204 TACGAGGAGTTCTTCATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10936 FBgn0034253 FBtr0086894,FBtr0086895 2 2 2 82 2R 13494101 13494120 AACCAGAGCTACTTGATCAC 59 13493968 13494058 GGAATAAACTTCGTTGAGCTG 59 NA Drosophila melanogaster 50 CG30321 FBgn0050321 FBtr0087286 1 1 1 76 2R 11680858 11680876 AATGGATGAAGTGGAACGG 59 11680916 11680934 TTTCTATTCCACTCGTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30090 FBgn0050090 FBtr0087279 3 1 1 158 2R 11577929 11577995 CTTTCAAAGCTCACATCTCG 59 11578116 11578134 AATTATAGCGCTGGAGCTG 59 NA Drosophila melanogaster 50 alphaPS4 FBgn0034005 FBtr0087371 1 1 1 80 2R 11148510 11148531 CTAAATTTACACCCATAGCCCT 59 11148572 11148649 AATCCTCGCAGAAATCTCC 59 NA Drosophila melanogaster 50 Tfb1 FBgn0033929 FBtr0087548,FBtr0087549 1 2 3 83 2R 10250940 10250958 GTAATGAATGAGCGTGTGG 58 10251005 10251085 TTGAGTCTTGATATCCGCA 58 NA DesignNoJunction Drosophila melanogaster 50 Aats-phe FBgn0020766 FBtr0087594 3 1 1 83 2R 9857094 9857181 ATATGGTGGAGCAGATCAG 58 9857228 9857246 GATAAACAATGCGGAAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6543 FBgn0033879 FBtr0087643,FBtr0087644 1 2 2 142 2R 9740744 9740762 TTAACACGGCTTACGAGAC 59 9740555 9740574 TTACTCGTTGGTAAACTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG8520 FBgn0033734 FBtr0087926 1 1 1 122 2R 8311503 8311521 CAGGATGATCCTAACGCTG 59 8311604 8311682 CTTTCGATGAATTTGGGTACAG 59 NA Drosophila melanogaster 50 CG13192 FBgn0033653 FBtr0088031 2 1 1 95 2R 7713838 7713856 TTGGATGTGATGGAATTGG 57 7713915 7713996 AATCAACTTGTCGGTTGGA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 inv FBgn0001269 FBtr0088068,FBtr0088070,FBtr0088069,FBtr0088067 2 4 4 60 2R 7364319 7364339 GCATAGACAATATCCTGAAGG 57 7364360 7364379 CTTAAAGCACCAATCTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33476 FBgn0053476 FBtr0088319 2 1 1 60 2R 6298049 6298067 GGACCATTCTGTGGATCAG 59 6297919 6297940 GGATTCCATGATAAACTTGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12929 FBgn0033429 FBtr0088541 2 1 2 149 2R 5473879 5473897 CAGAGGGCCAGTATTACAG 59 5473690 5473708 CATCAGGATACTGCCACAG 59 NA DesignNoJunction Drosophila melanogaster 50 Rad51C FBgn0033389 FBtr0088585 1 1 1 86 2R 5053968 5053986 TCAGTGCTGACAGAATTGG 59 5054033 5054141 CATCACCACAACTATATTCCCA 59 NA Drosophila melanogaster 50 CG8262 FBgn0027513 FBtr0088685 3 1 1 101 2R 4786812 4786881 ACCAATCAAGCAGGTAGAC 59 4786729 4786748 AAACTGAGGAATCACTCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34217 FBgn0085246 FBtr0112410 1 1 1 60 2R 4115842 4115862 GAAATCGAGTTGTTCGATCTG 59 4115802 4115823 TATAGTCCTTGAGACGATTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp42Eb FBgn0042086 FBtr0086177,FBtr0086176 1 2 2 158 2R 2886793 2886811 CTCTCCATCTGGATCTTCG 58 2887005 2887023 ATACTGTTGGTATCCCGTG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG41448 FBgn0084012 FBtr0111271 3 1 1 61 2R 562477 562689 ATTGAGAAAGAGGAACCGTG 59 562435 562453 CTTGTAAACCTCACGTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40005 FBgn0058005 FBtr0111236,FBtr0111235 2 2 2 91 2L 22842549 22842623 GAACATTCCATTTGTGTTCG 57 22842477 22842495 TAATGGATGTTACGGAGCT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41439 FBgn0084005 FBtr0111228 3 1 1 93 2L 22243408 22243426 GATAAGCTCAAACCGTGGT 59 22242760 22243351 CGGACGGAAGAGATAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14402 FBgn0032894 FBtr0081425 2 1 1 60 2L 20849802 20849820 TACAGGAGAGCTCTGTCTG 59 20849844 20849862 AAACTCGTGACCATCAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10747 FBgn0032845 FBtr0081341 2 1 1 157 2L 20090939 20091015 TCAATCTGGCTATTCCAGG 58 20090800 20090818 CAGTGTTCCAGAAGATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17564 FBgn0032768 FBtr0081225 2 1 1 119 2L 19298577 19298649 GCGAAGAGATGTACATTCG 58 19298476 19298494 GAGGGATCAGATGATTCGA 58 NA Drosophila melanogaster 50 CG17567 FBgn0040994 FBtr0081231,FBtr0081229 3 2 4 191 2L 19183449 19183517 CCAAATTCCACTTAGCTGC 59 19183223 19183241 AATGAGCACTGGATGTAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG10700 FBgn0032754 FBtr0081171 2 1 1 60 2L 19077844 19077865 GAGTGGTATAAACATCAATCCC 58 19077805 19077823 TTTAGTCTGCAGAAAGTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15172 FBgn0032740 FBtr0081140 2 1 1 62 2L 19023381 19023400 TGCTAGCAAACTTTGATGAG 58 19023425 19023443 CAGTGTCTGTGAAGATCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15157 FBgn0032675 FBtr0081059 2 1 1 80 2L 18204458 18204476 GAGGACGAGATATTCTCGC 59 18204396 18204415 TTTCGAGGATGTATTACCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13283 FBgn0032613 FBtr0080928 3 1 1 60 2L 16835818 16835836 TTTCGTATCGCCTTATGTG 57 16835776 16835795 GTGCCTCAAGAAATATGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31782 FBgn0051782 FBtr0080938,FBtr0080939 3 2 2 111 2L 16700296 16701206 ATCAAATCTTAACACCCGG 57 16700203 16700221 CGTATGAGTCTGAATGTGC 58 NA Drosophila melanogaster 50 CG5869 FBgn0028894 FBtr0080851 2 1 1 92 2L 16302195 16302268 ATAGCCAGATCGAATTGCA 59 16302121 16302139 GTTCGCGTATCTCGTAGAC 59 NA Drosophila melanogaster 50 CG3793 FBgn0028507 FBtr0080761 1 1 1 103 2L 15765116 15765135 GTTCTGGTCTATATCGAGGC 59 15765201 15765283 TTCATGTTGACCTGTTCGT 59 NA Nonspecific Drosophila melanogaster 50 mol FBgn0086711 FBtr0080676,FBtr0111014,FBtr0111016,FBtr0080677,FBtr0111015 1 5 5 81 2L 14984076 14984208 CTAGTCATATTAATCACTCGCC 58 14984016 14984034 GTGAGAAGGCTTTGTATGG 58 NA Drosophila melanogaster 50 Adh FBgn0000055 FBtr0100591,FBtr0100593 2 2 5 60 2L 14618429 14618447 TAGTGCATCCAAATTCGGT 59 14618471 14618540 ATAGTAAAGAGGGTCCGCT 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 spel1 FBgn0015546 FBtr0100661,FBtr0080630 2 2 2 166 2L 14364283 14364381 CTTTAAGAAAGAGGAGTGCA 57 14364510 14364528 CTCTTCCAAGAATGGAGTC 57 NA Drosophila melanogaster 50 CG18146 FBgn0028939 FBtr0080589 3 1 2 87 2L 13980362 13980380 GGTAACAATGCGTAAGCAC 59 13980429 13980510 CAAGTAAGTCTCAGTTCTGGT 59 NA Drosophila melanogaster 50 ics FBgn0028546 FBtr0080511 3 1 1 111 2L 13639941 13639961 CATGAAGATGGAGGAGAATCC 59 13639787 13639874 GTTGTAGATGATCTTATAGGTCTCC 59 NA Drosophila melanogaster 50 rho-6 FBgn0032415 FBtr0080360 1 1 2 110 2L 12131373 12131391 GATCTTCAAACCGGAATGG 58 12131055 12131300 CCTATAAAGCACTGAAAGCA 57 NA Drosophila melanogaster 50 CG4658 FBgn0032170 FBtr0079886,FBtr0079887 3 2 3 129 2L 9957784 9957802 GATGTCACCGAGAAGTACC 59 9957892 9957972 GAAAGACTTGTGACACAAAGAC 59 NA Drosophila melanogaster 50 pes FBgn0031969 FBtr0079553,FBtr0114550,FBtr0079552 1 3 3 86 2L 7988318 7988403 CCGGGTATTACCTTGTATGAG 59 7988252 7988270 AATTTCCTCTGATACGCGT 59 NA Drosophila melanogaster 50 CG14537 FBgn0031954 FBtr0079526 1 1 1 60 2L 7840743 7840761 AGGGATATAACCAGTGGAG 57 7840785 7840803 AGAAATCCATATTGGCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 r2d2 FBgn0031951 FBtr0079489 3 1 1 147 2L 7800620 7800638 CTATTGGAGATAGAGGCCC 58 7800822 7800840 GTTCCTCATCCAGATCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7214 FBgn0031940 FBtr0079499 3 1 1 81 2L 7744200 7744218 GAACTCTGTAAGTCGGGAG 59 7744137 7744156 GATCAGTGATACTGCCATCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Wnt4 FBgn0010453 FBtr0089291 2 1 1 186 2L 7256591 7256609 ACTTGCTGGAAGAAGATGG 59 7256210 7256228 CCAAATAGTACAGCGTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG11327 FBgn0031849 FBtr0079316,FBtr0079315 3 2 2 60 2L 6685901 6685919 AAATGAAGCCTCTGATGTG 57 6685859 6685878 CAGCTGTTCCATATCTAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7371 FBgn0031710 FBtr0079129 3 1 1 81 2L 5522671 5522745 TAAAGAATCGATACACAGCG 57 5522609 5522627 AATAGGTATTCCCGACAGG 58 NA Drosophila melanogaster 50 Cyp4ac2 FBgn0031694 FBtr0079067 1 1 1 112 2L 5266887 5267085 TGATTAGCACAGCACTCTC 59 5267159 5267179 CGTAAACTGAGGAATAACCTG 58 NA Drosophila melanogaster 50 CG15356 FBgn0031377 FBtr0077869 3 1 1 240 2L 1980410 1980553 GGAACTCGAGTCCTATTCAC 59 1980117 1980135 AAGAAGAGGATAGAGGCGT 59 NA DesignNoJunction Drosophila melanogaster 50 c-cup FBgn0031367 FBtr0077894 1 1 1 110 2L 1832362 1832437 AATGTTTCCTGCAAAGCTG 59 1832270 1832288 TTTGTGGTGACAAAGTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ush FBgn0003963 FBtr0078063 1 1 1 81 2L 524040 524059 GCTTAGCAGCAATACAAGAG 58 525432 536039 ACTCAGATCTTTGGAATCTCTG 59 NA Drosophila melanogaster 50 CG11455 FBgn0031228 FBtr0078117 2 1 2 113 2L 155729 155747 TGATCTCCGACTTTCAGGA 59 155897 155915 ATTCTTGTCCCTTACGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 mir-13a FBgn0046830 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 Tao-1 FBgn0031030 FBtr0074771,FBtr0074772 1 2 4 193 X 19470238 19470256 TGGACAACCTCAATTACCG 59 19469994 19470081 TGAGGAGCTCTGACTACTG 59 NA Drosophila melanogaster 50 CG32541 FBgn0052541 FBtr0074650 3 1 1 83 X 18881223 18881243 CTGTTCACAGAATTCTACTCG 58 18881288 18898635 TCCAACCTTCTGGAATCTC 58 NA InUTR Drosophila melanogaster 50 CG9903 FBgn0030756 FBtr0074297 1 1 1 60 X 16434458 16434478 TTTGGATACAGTTCACTGGAG 59 16434418 16434436 TTGGATATGTCTCCGTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 2 7 7 82 X 15717700 15717788 GATCCATTGCTTGAGACTG 58 15717832 15717852 TCGTAGAGATCTTTAAGTCCC 58 NA Drosophila melanogaster 50 CG14408 FBgn0030581 FBtr0114621,FBtr0073990 1 2 4 240 X 14725241 14725259 CAAGGTCAATCAGTCCCAG 59 14724275 14724293 GTTGTACGTTAACTTCGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11369 FBgn0029951 FBtr0071067 3 1 1 60 X 7469940 7469958 ACTTTCCGTGGTATACTCC 58 7469982 7470000 TTTGGTATTTGGGTTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100209 2 1 15 81 X 6981698 6984168 CGAAATGGAATCGATTCATCG 59 6980002 6981655 CATAACGTGACATTCCGGA 59 NA DesignRelaxed Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 1 8 8 166 X 6579447 6579465 ACAACGTCTTCCACTACAG 59 6579594 6579676 TGGAGAAGTCACATTGAAGG 59 NA Drosophila melanogaster 50 bcn92 FBgn0013432 FBtr0070431 1 1 1 60 X 2043261 2043280 CAGAATCTGGAGCTGATACG 59 2042843 2042861 GTTTGTCAGCGGAATACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32809 FBgn0023531 FBtr0089815,FBtr0089814 2 2 2 83 X 1579765 1584246 TCCACAAATCAAAGATTGGC 59 1579701 1579719 CTGAAGAGTACATGCCTCG 59 NA Drosophila melanogaster 50 pcl FBgn0011822 FBtr0070100 3 1 1 60 X 330998 331019 AGTGTTTCTGGTTATCTATCCG 59 330959 330977 GACTTTGTATCGTCAAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 unc-13 FBgn0025726 FBtr0089247 1 1 3 81 4 906511 907602 GACAGGGACAAGAATGGAG 59 906448 906469 TGCTATAGAATGGATTGTCACC 59 NA Drosophila melanogaster 50 CG11900 FBgn0039650 FBtr0085407 3 1 1 66 3R 25027716 25027734 CCTAAGGGATCTGCAAGTC 59 25027607 25027626 AACGAAGTACTGATCACGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14253 FBgn0039467 FBtr0085073,FBtr0085072,FBtr0085070,FBtr0085071,FBtr0085074 2 5 5 83 3R 22809873 22809891 CAGTATGCCTATGGAAGGC 59 22809935 22810014 CGGTAACTTAAAGATTTGGCTC 59 NA Drosophila melanogaster 50 sda FBgn0015541 FBtr0112882,FBtr0085066 3 2 2 80 3R 22769911 22769997 GATTGTCGAATACTATGGCG 58 22770037 22770058 TAGTCCTTGTTCATGTAGATGG 59 NA Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113386,FBtr0113387,FBtr0113388 2 3 7 157 3R 21531749 21532018 GTCGAAGATCTGGGTATCC 58 21527341 21527359 TGGTTAGATGTGTCTGTGC 59 NA Drosophila melanogaster 50 nAcRalpha-96Ab FBgn0000039 FBtr0084640,FBtr0084639 1 2 2 86 3R 20313318 20314186 GTGATCAGATCGATTTGAAGC 59 20314234 20314252 GATAGTACTCACGCAGGTC 59 NA Drosophila melanogaster 50 AP-1sigma FBgn0039132 FBtr0084496 1 1 1 98 3R 19785069 19785087 ATTCATCGCTATGTGGAGC 59 19785214 19785234 CTCATCCAGGATAAAGTATGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG17270 FBgn0038828 FBtr0083994 3 1 1 60 3R 16643045 16643064 AACTTCTACGTGATCTTCCC 59 16642910 16642930 TATAGATGAGGCCCAGTAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31199 FBgn0051199 FBtr0083930 2 1 1 60 3R 16568986 16569004 CGAACCTTAAAGAACTCCC 57 16568944 16568962 TTGGGTAGATCTTTGCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31231 FBgn0051231 FBtr0083662 1 1 1 61 3R 14492861 14492879 TTGAGCAAGCAACTAGAGG 59 14492968 14492986 TTCTTGTAGTTCGACTGCA 58 NA DesignNoJunction Drosophila melanogaster 50 cpo FBgn0000363 FBtr0083534,FBtr0083536,FBtr0100377,FBtr0083535,FBtr0083537 3 5 6 176 3R 13793463 13793481 CGCCATAATGGAGAATCAG 58 13832727 13832810 CCTTCATAGCCCTCATAGG 58 NA Drosophila melanogaster 50 Cap-H2 FBgn0037831 FBtr0082273,FBtr0082270,FBtr0082272 2 3 4 87 3R 6589604 6589625 CTAGATGAACTGTTGCTAATCG 58 6589671 6589889 GGCGTTGATCTTCTAAATCTG 59 NA Drosophila melanogaster 50 Syn FBgn0004575 FBtr0089476,FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471 1 5 5 80 3R 6041341 6042793 GGTGGATGAGATATCCGAG 58 6042837 6042855 TACTCTCGTCCATCTTTGG 58 NA Drosophila melanogaster 50 sage FBgn0037672 FBtr0081983,FBtr0081982 2 2 2 73 3R 5088826 5088844 CATATCCAAGCCAAATGGG 58 5088710 5088731 GGTGATTAATGTAGTTGATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14608 FBgn0037487 FBtr0113201 1 1 1 95 3R 3063233 3063251 CCATCTACCCACGAATTCC 59 3063308 3063389 TATGAAAGACCTGACAATCGG 59 NA Drosophila melanogaster 50 gfzf FBgn0053546 FBtr0091512 1 1 2 85 3R 2973457 2973475 ATGTGGACAACACAGATGG 59 2972805 2973410 GTAGATGGGTACAATAGAGCC 59 NA Drosophila melanogaster 50 Sodh-1 FBgn0024289 FBtr0081627 2 1 1 121 3R 2879973 2880044 TACTGCAATGACTATGCCG 59 2880129 2880147 TTTCGTGACGTTTCAAACG 59 NA Drosophila melanogaster 50 Ama FBgn0000071 FBtr0081619,FBtr0081620,FBtr0081618 3 3 3 65 3R 2589588 2589607 TCTTATATTCTGCCTTGCGA 58 2589635 2589653 CTGATCTGGCTGATCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14644 FBgn0037226 FBtr0078981 3 1 1 278 3R 78269 78287 GACAGGAAATCCTCACTCG 59 77954 78027 AGATCTCCTTGATCTCGAC 57 NA DesignRelaxed Drosophila melanogaster 50 CG33054 FBgn0053054 FBtr0078317 2 1 2 163 3L 21190877 21190895 GTACAAGCATCTTTGGAGC 58 21190610 21190628 TAGACAACAATCTCCAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 chb FBgn0021760 FBtr0089462,FBtr0089460,FBtr0089461 2 3 3 60 3L 21172357 21172375 GGAGGAACTACGATCACAG 59 21172398 21172417 CTTAGACATGTAGGCGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5618 FBgn0036975 FBtr0078179,FBtr0078180 1 2 2 84 3L 20349366 20349448 AGTCGACTTTACACTGTGG 59 20349495 20349514 CTTTAAGAGGCGAGTAACCA 59 NA Drosophila melanogaster 50 Cad74A FBgn0036715 FBtr0075240,FBtr0075239 1 2 2 94 3L 17363251 17363332 GAATGTCACAGAGAATGCTG 58 17363176 17363194 AAGTAATGGTTCCGGATGG 59 NA Drosophila melanogaster 50 CG13481 FBgn0036421 FBtr0113170 2 1 1 60 3L 14362401 14362420 TATGCAAGAGGACATTACCT 58 14362360 14362378 ATGTCTGCCATTGGAAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5897 FBgn0036220 FBtr0076070 1 1 1 60 3L 11881331 11881352 ATTATCAACGGGATAGAGATGG 59 11881292 11881311 TATCCGTAACAGGTCATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3967 FBgn0035989 FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480 3 5 5 121 3L 9410906 9411455 CATCACAAACAGTCCTAACAC 59 9410805 9410823 TCTGTGTTATCTGCTGCAG 59 NA Drosophila melanogaster 50 CG4452 FBgn0035981 FBtr0089493,FBtr0089494,FBtr0089495 1 3 3 183 3L 9361224 9361242 AGTGCGAACATTATCTGGG 59 9362075 9362093 CTTGGACATCGGTATACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34426 FBgn0085455 FBtr0112727 3 1 1 81 3L 8796302 8796320 AGACACCTATTGCCAAGAG 58 8796364 8796448 ACAGTAGATGTAGCTAGTGC 58 NA Drosophila melanogaster 50 mthl6 FBgn0035789 FBtr0076789 3 1 1 80 3L 7479773 7479793 GAAGATCCGAATTCCATATGG 58 7479835 7479909 AATAGTACCGACCTGAGGT 59 NA Drosophila melanogaster 50 CG32245 FBgn0052245 FBtr0073313,FBtr0073311,FBtr0073312 3 3 3 120 3L 4578858 4579453 GTTTGCTTTAAGGTGGTGC 59 4580094 4580112 CATAGGAGTCAATGCAGGG 59 NA Drosophila melanogaster 50 CG14997 FBgn0035515 FBtr0073226,FBtr0073225 3 2 2 85 3L 4241426 4241502 CTTTAGGAAGATGGGTCGT 58 4241551 4241569 CTGCGTAATGCTTAACACC 59 NA Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0110922,FBtr0073132,FBtr0073135,FBtr0110924,FBtr0073131,FBtr0073134,FBtr0110923,FBtr0110920,FBtr0110925,FBtr0073133,FBtr0110921 3 11 11 119 3L 3552855 3578298 GGCAGATTAACAATTTCCCG 59 3578377 3578398 GTTGTATGGAACTTTGTTACCG 59 NA Drosophila melanogaster 50 CG17723 FBgn0035432 FBtr0073057,FBtr0073055,FBtr0073058,FBtr0073054,FBtr0073056 2 5 5 87 3L 3312395 3312526 CATATTAGGTGCCGTAACCT 59 3312576 3312594 TGGTAGAGTGGATACCCTC 59 NA Drosophila melanogaster 50 CG1291 FBgn0035401 FBtr0073023 1 1 1 63 3L 3145174 3145192 TTCTCTTTCCAAGCATTCG 58 3145217 3145237 TGGAGATAGGAACAAGATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11537 FBgn0035400 FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117 3 5 5 167 3L 3131025 3131118 CATAATATCGACTCTCAACCAG 58 3130879 3130898 CAGGTGAAGAATACTGTGAC 57 NA Drosophila melanogaster 50 Dhc62B FBgn0013811 FBtr0072793,FBtr0072794 2 2 2 83 3L 1769261 1769341 CAAATTCAAGGGTCAAACTG 57 1769197 1769216 ATTGACTGTATCATCGAGGT 58 NA Drosophila melanogaster 50 CG12502 FBgn0035171 FBtr0072588 1 1 1 108 3L 869768 869786 TCTTCATAGTCCCGAAGTG 58 869858 869942 TAACTGACTCCGAAACTCC 58 NA Drosophila melanogaster 50 tamo FBgn0041582 FBtr0072281,FBtr0072282 1 2 2 150 2R 20017461 20017544 CTCTCAAGACCTATTCGGG 58 20017329 20017347 ACATTCGTAACCTGATCCG 59 NA Drosophila melanogaster 50 CG34205 FBgn0085234 FBtr0112398 2 1 1 187 2R 18018281 18018299 GGTGATCAAGTCCTATGCC 59 18018049 18018067 CGTACGACTTAACAATGGG 58 NA DesignNoJunction Drosophila melanogaster 50 Vrp1 FBgn0034695 FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104 1 7 7 86 2R 17998431 17998841 CAACCTAAATATCTCGTTAGGC 58 17998366 17998384 AGACTGCTGTTTAAGGACG 59 NA Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708 2 9 9 93 2R 17398737 17398915 TTTGCCAGAGGATTACGTC 59 17398972 17398990 ACCAATCACCGACTTTAGG 59 NA Drosophila melanogaster 50 CG30389 FBgn0050389 FBtr0071633,FBtr0071632 1 2 3 88 2R 17043163 17043181 TCTTCATACCCGTTCACTG 58 17043019 17043114 CAAACAGATACCCTTATCTGTG 58 NA Drosophila melanogaster 50 CG13349 FBgn0033886 FBtr0087611,FBtr0114495,FBtr0114494,FBtr0087610,FBtr0114493 2 5 5 80 2R 9847383 9847401 GACGATCTCATCGTCTTCC 59 9847321 9847339 CTTAAGCACATAGACACGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13175 FBgn0033693 FBtr0100143 1 1 1 167 2R 8071317 8071335 TAGGAATCGCAAATTGCAG 58 8072027 8072046 GTGGTTATAAACTTTGCCGT 58 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 Cpr47Ef FBgn0033603 FBtr0088186,FBtr0088187 3 2 2 60 2R 7157262 7157283 AAGGGATCTGAGAATGAAATCC 59 7157223 7157241 CTTCGGGATTTGTGTAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8083 FBgn0025709 FBtr0088561 1 1 3 136 2R 4967665 4967744 ACTGGATCATGAGTTGGAC 58 4967844 4967862 AAATCGAGATCCTCACCAG 58 NA Drosophila melanogaster 50 CG1399 FBgn0033212 FBtr0088940,FBtr0088939 2 2 2 122 2R 3565904 3566089 GTCTAAACAGAATGGAACTCC 58 3565802 3565822 AGCTGACTGATACACTATTGG 59 NA Drosophila melanogaster 50 Dpit47 FBgn0033083 FBtr0086146 1 1 1 60 2R 2548991 2549012 TCATCAAGAACTACAGATCCTC 59 2548952 2548970 TCTGGCTTGTAGAACAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17082 FBgn0039994 FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289 3 6 6 91 2R 644085 644172 TTCTATTGGTCGATCAAAGGAG 59 644224 644242 CATTCTCTGAGGCTGACAG 59 NA Drosophila melanogaster 50 CG5435 FBgn0032431 FBtr0080387 3 1 1 199 2L 12430338 12430356 AAATCATTTCGGGTGTTGC 59 12430073 12430091 TAATAGCGGAAGAAGTTGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG5381 FBgn0032218 FBtr0080060 3 1 1 111 2L 10319557 10319634 CGCGATCTAAACGATAATTCC 59 10319402 10319421 CATTTGAGGACAATGAGTCC 58 NA Drosophila melanogaster 50 CG3714 FBgn0031589 FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077482,FBtr0077479 3 5 6 115 2L 4190819 4192645 AGAAGTCATTCAGGAGTGG 58 4190722 4190740 GGAAAGATAGGCCAGATCC 59 NA Drosophila melanogaster 50 Rbp9 FBgn0010263 FBtr0077636,FBtr0077635 1 2 7 153 2L 2955495 2961223 TTATCCATCACAACAGCGT 59 2961340 2961358 CTGTTGGTCACATTGTTGG 59 NA Drosophila melanogaster 50 Eno FBgn0000579 FBtr0077907,FBtr0077908,FBtr0077906,FBtr0077905 3 4 5 84 2L 1727657 1727675 TAAATTTGTGCAGATCCGC 58 1726601 1726619 GGAGTCGTAGATTTGACGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31935 FBgn0051935 FBtr0077916 3 1 1 120 2L 1595532 1595607 CAAACTAGCTGACATTCTAAGC 59 1595433 1595452 TATTGACGGAAGTTCATCCG 59 NA Drosophila melanogaster 50 CG12061 FBgn0040031 FBtr0113683,FBtr0113682 3 2 3 118 XHet 22997 23088 TACTCAACCGACCAAACTG 59 23169 23188 AAGCCTCATACCACATAACC 59 NA Drosophila melanogaster 50 upd3 FBgn0053542 FBtr0113465 2 1 1 70 X 18174156 18174174 GTGGCGATTCTATAAGGGA 58 18174208 18177439 GAAGGTTCAACTGTTTGCT 58 NA DesignRelaxed Drosophila melanogaster 50 CG2444 FBgn0030326 FBtr0073531 1 1 1 60 X 11598591 11598610 GACTTTGTGAACATCAATCG 57 11598550 11598568 TGTCGCAATTGTATTTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)G0237 FBgn0027259 FBtr0073541 1 1 1 95 X 11466148 11466225 TATCTGGGATCCTAGCTGTC 59 11466072 11466090 GCATGCATTACAAAGTCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR42206 FBgn0085833 FBtr0114291 1 1 1 285 U 4660494 4660512 ATACTGGCGTTTCTCACAG 59 4660813 4660833 GGGTACATTTGGCTTAAATGG 59 NA DesignNoJunction Drosophila melanogaster 50 Kif3C FBgn0039925 FBtr0089196 1 1 1 134 4 1185989 1186007 GACTTAAGGAAGCTTCCCA 58 1186105 1186185 CTAAGGAATCCTGGAGCAG 59 NA Drosophila melanogaster 50 CG11077 FBgn0039930 FBtr0089222 2 1 1 60 4 1049498 1049519 CTACCTATCTATATTGGTCCGC 59 1049459 1049477 GAAGTTTAGCATCTGTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085631,FBtr0085634 3 4 5 238 3R 26211978 26212058 GATCTGATCAATGTGCCGA 59 26211758 26211777 ATCTTCTTGAGAGTGGTCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5376 FBgn0038977 FBtr0084292 2 1 1 83 3R 18313859 18313940 TATTCAAGGATCTTAAGTCCGC 59 18313797 18313816 TGTTCAGCTATTTCTTGGCT 59 NA InUTR Drosophila melanogaster 50 CG4845 FBgn0038764 FBtr0083829 2 1 1 125 3R 15851271 15851289 TATTGCGACTATGGAGCTG 59 15851376 15851459 AGCGATAGCATCTCTAAACTG 59 NA Drosophila melanogaster 50 Ace FBgn0000024 FBtr0082780 2 1 1 124 3R 9063870 9063889 TACTTCGATAAGGACGATGC 59 9062987 9063783 TCCCAACTGGTATACTGGA 59 NA Drosophila melanogaster 50 Pglym87 FBgn0011270 FBtr0082620 2 1 1 60 3R 8057661 8057680 TGACAAGGACATTATGAGCC 59 8057620 8057640 GTCTAGTTCGTAGACGAAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6782 FBgn0037912 FBtr0100464 1 1 4 192 3R 7386919 7390171 GCTGATCACCCTAATTCCC 59 7386745 7386763 TAGGTGATGCAGATCTCGA 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG10298 FBgn0037432 FBtr0081710 1 1 1 92 3R 2168868 2168939 TTACGGTGACTTATGGTGG 58 2168995 2169013 CATCCCATTTCACCTTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2100 FBgn0037369 FBtr0078724 2 1 1 60 3R 1561572 1561590 GAATGATAAACGCAAACGG 57 1561530 1561551 TCCTTGTCATTGATTCTAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11247 FBgn0037120 FBtr0113184,FBtr0078459,FBtr0078458 3 3 3 151 3L 21718590 21718668 CCTATCAGTGTAGGATCTGC 59 21718458 21718476 CATGTGGTTCTTTAGGTGC 58 NA Drosophila melanogaster 50 CG11796 FBgn0036992 FBtr0078225 3 1 2 102 3L 20432557 20432642 GACAAAGGAACCAAACCTG 58 20432473 20432492 GTCGAGTGGTATAGTAGCTG 59 NA Drosophila melanogaster 50 GlcAT-P FBgn0036144 FBtr0100422,FBtr0076189,FBtr0076190 2 3 3 89 3L 11171622 11171757 GTGCAGAGATATTCTCACGT 59 11171552 11171570 AGGTTCGTGTTCTTGTAGC 59 NA Drosophila melanogaster 50 Hsp67Bb FBgn0001228 FBtr0100653,FBtr0100655 1 2 2 88 3L 9366346 9366364 CAATCATATTCACCTGCCG 58 9366416 9366502 GTAGATCACCACATTGCTG 58 NA Nonspecific Drosophila melanogaster 50 CG8209 FBgn0035830 FBtr0076753 2 1 1 257 3L 7970266 7970284 GAAGAAGATCGTTGAGCAG 58 7970561 7970579 GTTTCCTGTAGTGTTGAGC 58 NA DesignNoJunction Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780 3 8 8 128 3L 7811268 7811288 CCAGATGACAAATACAAGGAG 58 7810754 7811178 GTCGGCATATTGTGTTACC 58 NA Drosophila melanogaster 50 CG14820 FBgn0035718 FBtr0076894 3 1 1 102 3L 6927067 6927178 CTGTGGATGTTGACTGGAG 59 6927242 6927262 TTATGTAGGCGGTTAGTTGAC 59 NA Drosophila melanogaster 50 CG8398 FBgn0035708 FBtr0076980,FBtr0076979,FBtr0076981,FBtr0076978 1 4 4 92 3L 6609616 6609634 AAGCACTTCATTCCCTACC 59 6609687 6609778 GCAGTAGATTATCAGATCTGGA 58 NA Drosophila melanogaster 50 5SrRNA:CR33384 FBgn0053384 FBtr0086376 1 1 1 62 2R 15642265 15642283 AATACATCGGTTCTCGTCC 59 15642221 15642239 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Psc FBgn0005624 FBtr0087798 2 1 1 168 2R 8864872 8864890 ACATCATCTGTCACCTGTG 59 8858022 8862018 GTGTCCGATTTGATGTTCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG8801 FBgn0028473 FBtr0088554 1 1 1 122 2R 5285615 5285702 CATTTGGTGGACAATGTGG 59 5285511 5285529 CTGTCGCTTCATAATGGTG 58 NA Drosophila melanogaster 50 dpn FBgn0010109 FBtr0088803 3 1 1 158 2R 4119196 4119443 AGCAGAACTTAGAAAGACCA 58 4117961 4117979 GTCATCTCAAGTATGTCGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG40133 FBgn0058133 FBtr0111297 2 1 1 67 2R 38747 46846 AATCTGCTAGCAACAAGGA 58 46877 46895 ATCAGTATGCTTGAGTCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5783 FBgn0032670 FBtr0081049 2 1 1 88 2L 18156496 18156514 TGAATCTGGTGTACAGGGA 59 18156566 18156640 AAATCCAGATGGAGGTTCG 59 NA Drosophila melanogaster 50 elfless FBgn0032660 FBtr0081046 2 1 1 82 2L 18010986 18011007 GGAATCCAAATGAGTATTACGG 58 18010857 18010943 ATACTCCAACAGGAATGGG 58 NA Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876 3 7 7 169 2L 16472183 16472201 GAATATTCAGAGCCTGCTC 57 16469244 16471862 TCTGGTAAAGCACTCTCAG 58 NA Drosophila melanogaster 50 CG15358 FBgn0031373 FBtr0077892 2 1 1 60 2L 1882850 1882868 GGATAGACTGGAAAGCCAG 59 1882808 1882828 TTTCCTATCGAACTTGGAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snmRNA:204 FBgn0065101 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me18S-A1374 FBgn0065080 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:E4:62Ab FBgn0011852 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30206 FBgn0050206 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi28S-1192c FBgn0082999 FBtr0113564 2 1 1 64 X 17038248 17038269 CCAATCTAATTCTGCATAGTGG 58 17038205 17038223 GATGGTGATTGTTCTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 roX1 FBgn0019661 FBtr0070634,FBtr0070635 2 2 2 60 X 3755430 3755448 CTCTATCGGATGCATGTGG 59 3755388 3755409 CCTTGTCTACAGTATCATTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15445 FBgn0031161 FBtr0077252,FBtr0077251,FBtr0077253,FBtr0077250 3 4 4 80 X 20989728 20989746 TGTACGAAAGGATCAATCG 57 20989788 20989898 GATCCTCCATCTCTATTAGGT 57 NA Drosophila melanogaster 50 sw FBgn0003654 FBtr0089397 1 1 13 165 X 20101684 20104508 CGGATTATTATGTGCTTGCA 58 20101538 20101556 TTCTTGATCTCGAGTGGTG 59 NA Nonspecific Drosophila melanogaster 50 CG11943 FBgn0031078 FBtr0074798,FBtr0074799 2 2 2 80 X 19747834 19747916 GATCTGGTCTATAGCACGC 59 19747959 19747978 CTTGGAGTTCATGAAGTCGA 59 NA Drosophila melanogaster 50 CG14235 FBgn0031066 FBtr0074817,FBtr0074815,FBtr0074816 2 3 3 194 X 19638353 19638371 CATCGCTATAGCTATCGCC 59 19635081 19635099 GAAGTCGATGTACGACTGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Ranbp21 FBgn0031051 FBtr0074759 2 1 1 60 X 19545094 19545114 GAGTACACAATCAAGTACCGA 59 19545054 19545074 CCTTAATGTACACCTTCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS14 FBgn0044030 FBtr0074785 3 1 1 222 X 19373741 19373759 GATTGGAAGATGATTCGCG 59 19373537 19373555 TGTACTTGTGGACAACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15044 FBgn0030928 FBtr0074627 3 1 1 68 X 18385671 18385689 TCATTGTGAACCACTACGA 58 18385621 18385639 GATAGCTCATGAGCACCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mnb FBgn0002777 FBtr0074542,FBtr0074541,FBtr0100616 3 3 3 115 X 17764008 17764027 ATTCACTGTGATTTGAAGCC 58 17763836 17763930 ATGTAGTGGTAGATCCGCT 59 NA Drosophila melanogaster 50 CG8326 FBgn0030851 FBtr0074486 1 1 1 60 X 17522778 17522796 CAAGAGGTTGATACCGAGG 59 17522736 17522756 CAGCATCCTGTTTGAATTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12992 FBgn0030846 FBtr0074450 1 1 1 60 X 17485252 17485271 TTTGATAACTACCAATCGGC 57 17485292 17485312 GAGCGTTGTAATAGGAATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8557 FBgn0030842 FBtr0074434,FBtr0074435 3 2 2 201 X 17357800 17357818 TGTGGACCTTATGATGACG 59 17356148 17357638 CTTGTAATCATTGACTAGTCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9125 FBgn0030793 FBtr0074352 3 1 1 61 X 16696995 16697013 CCTACATTAAGCAACACCA 57 16696952 16696970 TAGATTTCTCGCATCGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eas FBgn0000536 FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211 2 5 5 112 X 16178691 16178711 CTCTATGTCCAGGTCAATCAG 59 16178784 16179063 AATGCATAGCCTACGTAGTC 59 NA Drosophila melanogaster 50 mmd FBgn0041109 FBtr0074156,FBtr0074155 1 2 2 84 X 15857082 15857100 AGATTGGACAATGTCCGTC 59 15856959 15857034 AAGCAGTAACCTGAGATGC 59 NA Drosophila melanogaster 50 Graf FBgn0030685 FBtr0074196,FBtr0074195,FBtr0074198,FBtr0074199,FBtr0074194,FBtr0074197 3 6 6 81 X 15646356 15646433 AACCAATGTTCGTTACTCC 57 15646293 15646312 ATAGTTCTCCGGAATGAGTC 58 NA Drosophila melanogaster 50 CG9123 FBgn0030629 FBtr0074019 2 1 1 90 X 15235867 15235885 CAGCTCCTATGCAAGATCC 59 15235795 15235813 GTCGTAGACGAAGATCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lsd-2 FBgn0030608 FBtr0110969 3 1 3 103 X 14966818 14966838 GGGAACTCAACAAGTTTATGG 59 14966629 14966647 TCCAACTGTCTGTACTGTG 58 NA DesignNoJunction Drosophila melanogaster 50 Flo-2 FBgn0024753 FBtr0073952,FBtr0073950 1 2 6 135 X 14818430 14820800 AATGCAAGATCATGAAGGC 58 14820899 14824789 GTAAGCGTTCCCAATATGG 58 NA Drosophila melanogaster 50 CG11071 FBgn0030532 FBtr0073829 3 1 1 289 X 13748717 13748735 CATCCTCAATTTCTTGCGC 59 13748167 13748185 GCTTCGATAGATAGTCCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2574 FBgn0030386 FBtr0073644 1 1 1 60 X 12303646 12303664 AAATTGCTAGACACTGGAC 57 12303688 12303706 TCTCTGTTCTTATCCTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ptp10D FBgn0004370 FBtr0073525,FBtr0073524 3 2 3 174 X 11567985 11568087 CATACAAATCCCAGCTCGA 59 11568224 11568243 ATTTCCGTCTATGCTGTAGC 59 NA Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073483,FBtr0073492,FBtr0073491 2 3 12 180 X 11276005 11281814 ATAGCTGATAATCAGCGCA 58 11281958 11282028 GTATCTGTGAAGTCTGGGA 57 NA Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 2 8 9 95 X 10692568 10692661 CGAATAAGGGTGAAATTTGC 57 10692492 10692510 GCATGATCCGTTTAATGGT 58 NA Drosophila melanogaster 50 spri FBgn0085443 FBtr0112688,FBtr0112689 3 2 4 87 X 10386360 10390835 CGTGAAGTCTTATGTCACC 57 10386291 10386309 CCAATTGAAGGGTGTATGC 58 NA Drosophila melanogaster 50 CG15366 FBgn0030080 FBtr0071355 1 1 1 60 X 8967230 8967249 TGGTTATCTAATCACCTGCT 58 8967189 8967207 CAGATTGCTTGCTTTCAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33181 FBgn0053181 FBtr0113452,FBtr0113453,FBtr0113455,FBtr0113454,FBtr0113451 2 5 5 82 X 8409361 8409381 ATTATCGGGATTATACCACCG 59 8409425 8409512 GTCTTCGCATAGGGAACTC 59 NA Drosophila melanogaster 50 CG1440 FBgn0030038 FBtr0071197,FBtr0112961,FBtr0112962 3 3 3 92 X 8334503 8334584 GTATCCGTGGATAAGAGCG 59 8334640 8334658 GTTCATCACCAGATAGCCC 59 NA Drosophila melanogaster 50 sdt FBgn0003349 FBtr0089974,FBtr0089977 2 2 7 91 X 8111096 8117667 CCTAAAGCAATGGAATCGC 59 8117722 8117740 TTATGTAGTCATCCGGCAG 58 NA Drosophila melanogaster 50 CG10958 FBgn0030004 FBtr0071153 1 1 1 60 X 8028398 8028418 GGATACATTTCTACCCAAGAG 57 8028439 8028458 GACCAGATAGTGATTGTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14430 FBgn0029927 FBtr0071004 1 1 1 62 X 6880912 6880930 GACTATGTGCGAAACAAGG 58 6880953 6880974 CGTATCACAAGTGTAAATGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12219 FBgn0043796 FBtr0070925 3 1 1 100 X 6193554 6193655 AAGCGATATTTGGAGGAGC 59 6193472 6193492 TGGTACATATTCGACTTGGAG 59 NA Drosophila melanogaster 50 CG18341 FBgn0029812 FBtr0070816 1 1 1 175 X 5703198 5703216 TTGTCCAAGGGATATGAGC 59 5703353 5703444 CCACAACAGTATATGTGATCC 58 NA Drosophila melanogaster 50 CG32767 FBgn0052767 FBtr0070761,FBtr0070760 3 2 2 103 X 4972049 4972158 AACAGGTGTTATTTCGCCA 59 4971964 4971982 CTATCGATAGTGGCACACC 59 NA Nonspecific Drosophila melanogaster 50 CG13762 FBgn0040333 FBtr0070444 3 1 1 60 X 2517824 2517842 CATACTACATGCCCGACTG 59 2517782 2517801 CAGTACTTGTCGGAGTAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pck FBgn0013720 FBtr0070256,FBtr0070255,FBtr0100198 3 3 3 194 X 1365452 1365470 TATCCGTGAGTATCTGCTG 58 1365628 1365700 ATGAACAGAGACGAGATGG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 sdk FBgn0021764 FBtr0070132,FBtr0070131,FBtr0070133,FBtr0070130 2 4 4 60 X 622716 622734 ATGCCGGATCCATATTCAG 59 622758 624284 TCAAAGATGCCCATGTAGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG13373 FBgn0029522 FBtr0112947 1 1 2 73 X 371950 372049 CTGCGTGACTTTATTTGGT 58 372086 372104 TGAAGAACATCTGGCAGTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CR40959 FBgn0085777 FBtr0114228 2 1 1 176 U 5913930 5913949 TATGTAAGTTGAGCCGTACC 59 5914087 5914106 TCGGTCTAGTAAATACACGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40908 FBgn0085533 FBtr0113946 1 1 1 217 U 2966070 2966088 TAACATCCCAAACCCACAC 59 2966269 2966287 ATCATCATGGATTGGCAGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40339 FBgn0058339 FBtr0113866 3 1 2 72 U 1062793 1062814 CTTGTATACTCCTGTTCTCTGG 59 1062845 1062865 TCGTTATCTCCACATAACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 unc-13 FBgn0025726 FBtr0089246 2 1 3 94 4 906448 906469 GGTGACAATCCATTCTATAGCA 59 904266 906393 GTCTTGAGAACCAGCTCAG 59 NA Drosophila melanogaster 50 CG11148 FBgn0039936 FBtr0089250,FBtr0089249 3 2 3 185 4 886493 886569 ACTTGGCAATAACTCTCGT 58 886267 886347 GCCTTTGATATAACCGATAAGC 59 NA Drosophila melanogaster 50 gw FBgn0051992 FBtr0089098,FBtr0089100,FBtr0100166,FBtr0089101,FBtr0089096,FBtr0089097,FBtr0089099,FBtr0100165 3 8 8 80 4 671648 672941 TAACAGCACAGATTGATGGT 59 671587 671605 TCAAATACGGGTGAAAGCT 59 NA Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0089447,FBtr0113417,FBtr0089445,FBtr0089449,FBtr0089448,FBtr0089451,FBtr0089446,FBtr0089450 2 8 8 166 4 157780 157853 TCGAGCAACCTTAAGACAC 59 158041 158059 TAAACCAATTGCTTGCAGC 59 NA DesignRelaxed Drosophila melanogaster 50 snoRNA:Psi18S-301 FBgn0083039 FBtr0113583 2 1 1 70 3R 16400695 16400713 AACTGTGTCGATTACCGTG 59 16400747 16400765 ACATGTCTGAGTCTTACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 iab-4 FBgn0020546 FBtr0083363,FBtr0083362 3 2 2 104 3R 12677135 12677153 CTTAGCAGGTTTCTTGACG 58 12681555 12681573 GACGTGTCCTTCTATTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 2 14 14 109 3R 27690344 27690863 AAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 Cpr100A FBgn0039805 FBtr0085710 2 1 1 63 3R 26693838 26693856 CCAGAGGCGTACTATTTCG 59 26693946 26693964 CAAGTGATCTCCAGAAGCT 58 NA DesignNoJunction Drosophila melanogaster 50 zfh1 FBgn0004606 FBtr0100269,FBtr0085701,FBtr0085702 2 3 3 283 3R 26611408 26611426 ATTAAGCTGCCCGATTACC 59 26611741 26611759 CACTCTATGCACTGGTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9717 FBgn0039789 FBtr0085679 2 1 1 92 3R 26410833 26410851 GGTCTTCATCCTCTACCAG 58 26410568 26410586 TCGGGAGTTAGCATTAGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG7912 FBgn0039736 FBtr0085605 1 1 1 196 3R 25832224 25832299 GTTTAACGGCATTGAGGTG 59 25831976 25832064 GTGACTTGAGGTTCAAAGC 58 NA Drosophila melanogaster 50 CG31041 FBgn0051041 FBtr0085470 2 1 1 70 3R 25416392 25416410 GTACAACGAGGACTTCACC 59 25416340 25416358 GGTAGCTTGAGTCGATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15817 FBgn0028476 FBtr0085395,FBtr0085396 2 2 2 81 3R 25057749 25057767 TAATTGCATCAGGGAAACG 58 25057812 25057896 GGCTATGTATCCATTTGCG 58 NA Drosophila melanogaster 50 CG14260 FBgn0039504 FBtr0085157 3 1 1 72 3R 23091399 23091417 AGAACAAGCGAGTGATCAG 59 23091453 23091471 GTGTAGATGTAGAGGAGCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 woc FBgn0010328 FBtr0112857,FBtr0085178 3 2 2 86 3R 23083857 23083875 GTACTACGAGCGGTTTACC 59 23083725 23083807 CGAGTGACAATGTATTGCG 59 NA Drosophila melanogaster 50 Nep5 FBgn0039478 FBtr0085148,FBtr0113296,FBtr0085147 3 3 3 150 3R 22885911 22885990 AAGTGCATGAGTTCAAGGA 59 22885779 22885797 ATGTAACGAACCCAGATGG 59 NA Drosophila melanogaster 50 GCR(ich) FBgn0029170 FBtr0085101 2 1 1 152 3R 22875873 22875891 GAAGACTCTGGTCTACGTG 59 22876007 22876025 GAGATTCCTCCAGAAATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL34a FBgn0039406 FBtr0084973 3 1 2 146 3R 21884950 21884968 ATTTCCGGAGAGGTTTGTG 59 21884595 21884614 TTCTTCACGTACTGGTACAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Dak1 FBgn0028833 FBtr0084976 1 1 1 60 3R 21880924 21880942 CAGCAATAGGTTCATCACC 58 21880882 21880902 GCTCATGATTCCGATATTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nf1 FBgn0015269 FBtr0100113,FBtr0084953,FBtr0084952 1 3 3 81 3R 21814617 21814635 GAACATATTCTACCAGGCC 57 21814679 21814751 TTCTCCAATCTTGTATCGTC 57 NA Drosophila melanogaster 50 CG11913 FBgn0039331 FBtr0084833 1 1 1 60 3R 21185067 21185086 ATGCGTAATATTGGCATTGG 59 21185107 21185127 CAGTGCATCCATAGTTTAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tnc FBgn0039257 FBtr0084754 1 1 1 246 3R 20841625 20841736 TTTATCTGCCTCCTGTGTC 58 20841946 20841964 ATACATTTGCAGGACACGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG13646 FBgn0039255 FBtr0084751 1 1 1 157 3R 20774503 20774521 CTGATAACTTGCTGCAGTC 58 20774642 20774796 TTTGAAGGAGAGGGATTCC 58 NA Drosophila melanogaster 50 CG10899 FBgn0039235 FBtr0084732 1 1 2 80 3R 20682617 20682691 ATAAGGAACCTTGAGGATCC 58 20682556 20682577 CAACTTAGTTATGCTGGATACC 58 NA Drosophila melanogaster 50 CG6879 FBgn0039222 FBtr0084695 3 1 1 178 3R 20606605 20606623 CAAGCTCTTCGATCTGGAG 59 20606762 20606848 GGCTGACATTGTTATTGATCAC 59 NA Drosophila melanogaster 50 CG5794 FBgn0039214 FBtr0084668,FBtr0084666 3 2 3 140 3R 20465549 20465567 GATAACACTCGTGTTCGGA 59 20465305 20465389 GCTATTTATGTCGCGATAACTG 59 NA Drosophila melanogaster 50 CG6726 FBgn0039049 FBtr0084349,FBtr0084348 2 2 2 95 3R 18918259 18918330 GACTCTTTGGCATCTTCGT 59 18918388 18918407 ACCACATAGTTCAGCTTCTC 59 NA Drosophila melanogaster 50 p53 FBgn0039044 FBtr0084359 1 1 2 132 3R 18878909 18879084 AGAAAGCACTGATTCCGAG 59 18878662 18878743 ATTCCCGGAGTTTAATCCC 59 NA Drosophila melanogaster 50 CG6982 FBgn0039014 FBtr0113267,FBtr0113268 1 2 2 134 3R 18555138 18555156 GATTGGTTAATGGCCTCAG 58 18555254 18555342 CTTAATGTAGCCGACATCG 58 NA Nonspecific Drosophila melanogaster 50 CG31343 FBgn0051343 FBtr0084126 1 1 1 80 3R 17572838 17572857 TCTGTACATGTTCAAGAACG 57 17572898 17573120 GTATATTGGTTCTTGGTCAGG 58 NA Drosophila melanogaster 50 CG6353 FBgn0038893 FBtr0084116 1 1 1 84 3R 17488563 17488581 GGTGGAATTCAGTAGGGAG 59 17487932 17488449 TCCGTGGATTTGAACATCC 59 NA Drosophila melanogaster 50 bap FBgn0004862 FBtr0084087 2 1 1 89 3R 17215689 17215707 GCCCTGATCAACATCTACC 59 17215760 17215778 GTAGAAGTACGGGAATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084069 1 1 22 82 3R 17200833 17200851 CAGTCCCAGAACTACAGTG 59 17183074 17200787 TACGCAACAGAACCTTGAG 59 NA Drosophila melanogaster 50 Mvl FBgn0011672 FBtr0089521,FBtr0089522 3 2 3 185 3R 16881620 16881699 TTTGTTAATGGACTGGGCA 59 16881390 16881408 AGCCATGTGTATCACAAGG 59 NA Drosophila melanogaster 50 CG5621 FBgn0038840 FBtr0110956,FBtr0083978 3 2 2 171 3R 16729758 16729776 CAAGCTGGAAGTCATTGAG 58 16729911 16730012 ATAGGGTTCACTAATGGCC 58 NA Drosophila melanogaster 50 Nep4 FBgn0038818 FBtr0083936,FBtr0083937 1 2 2 88 3R 16479501 16479522 CTGCATTATTGCCCAATATAGC 59 16479272 16479452 CTGCGATATTCTCACCCTG 59 NA Drosophila melanogaster 50 lrrk FBgn0038816 FBtr0112788 2 1 1 80 3R 16465956 16465975 GATGAAGCTGGATGATCTCC 59 16466016 16466105 AGACTGACAATGTAGCTTCTG 59 NA Drosophila melanogaster 50 CG6231 FBgn0038720 FBtr0083810,FBtr0083809,FBtr0083807,FBtr0083808 2 4 4 86 3R 15444862 15444881 AAATGTGGCGACTTTAATCG 59 15444734 15444816 CGTAAAGTAATGCATCGATACG 59 NA Drosophila melanogaster 50 CG7142 FBgn0038595 FBtr0083600 2 1 1 60 3R 14104558 14104576 TATTCACGATCAGAAGGGC 59 14104516 14104535 CACGTAGTAGTCGATGTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cbp20 FBgn0022943 FBtr0083551 1 1 1 82 3R 13990699 13990717 AGTATAAGAAGACGCCCTG 58 13990763 13990905 ATTCACAAATCTCATGGCC 58 NA Drosophila melanogaster 50 CG14323 FBgn0038529 FBtr0083498 2 1 1 62 3R 13447716 13447734 ATCATACAGGACCAGAACC 58 13447672 13447690 GACGAAACAAAGTACCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SF1 FBgn0025571 FBtr0083456 2 1 1 89 3R 13367295 13367393 ATTCGATAACTCAGCGGAC 59 13367446 13367464 GGAATGAAGGTCTTGTCGT 59 NA Drosophila melanogaster 50 CG17560 FBgn0038450 FBtr0083330 1 1 1 109 3R 12443932 12444007 AAAGGATCCGGTGTTTGAG 59 12444080 12444098 CCGATTGGCTTATACCCAG 59 NA Drosophila melanogaster 50 CG12753 FBgn0038427 FBtr0083315,FBtr0100643 3 2 2 80 3R 12266239 12266258 TTTCAGTAATCTGGTCTGGT 58 12266117 12266199 GATTGATGGTCTATATCTGTGC 58 NA Drosophila melanogaster 50 mRpS33 FBgn0038426 FBtr0083316 3 1 1 60 3R 12262128 12262146 GAACTACCTCTCAAATCGC 57 12262086 12262104 CATGGACTTCTCGTTTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204 2 6 8 195 3R 11782022 11785052 GACTGATGAGGAACAATGG 57 11785211 11785229 CCAATCGTTGTTAGTCGAG 58 NA Drosophila melanogaster 50 CG31302 FBgn0051302 FBtr0083097,FBtr0083096 1 2 3 131 3R 11209088 11209154 CTACTCAAGCCTCTTGAGC 59 11209249 11209267 GATATGGATGATAGGCCGC 59 NA Drosophila melanogaster 50 Gyc88E FBgn0038295 FBtr0083028,FBtr0083027,FBtr0110961 1 3 3 80 3R 11013404 11013425 GTATCAGATGATACCCAAACAG 58 11013465 11013554 CTATCGAACATCTCACAGGT 58 NA Drosophila melanogaster 50 RpII15 FBgn0004855 FBtr0082925 3 1 1 60 3R 10135040 10135059 GAATTGCGATTACAAACAGG 57 10135081 10135100 GTGCATAATCTTGTTCACGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 primo-2 FBgn0040076 FBtr0091746,FBtr0091745 2 2 2 67 3R 9536736 9536948 CCTATTATGACATTGGTGAAGC 59 9536690 9536708 ATTCCTACACGCTATGCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31469 FBgn0051469 FBtr0082844 3 1 1 80 3R 9535212 9535230 GCAAGATTCAATTGCTGGG 59 9535092 9535171 CCATGCCTTGAATAAAGTATGG 59 NA Drosophila melanogaster 50 CG9611 FBgn0028487 FBtr0082846,FBtr0112939,FBtr0082847 1 3 5 157 3R 9522676 9522694 AAGACTCTGCACGATAGAG 58 9522057 9522557 CGTAGTTTGTATCTATCCGGA 58 NA Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082802,FBtr0082801,FBtr0082806 2 3 8 96 3R 9488692 9488710 ATCATCCTCTCGTTATGGC 58 9488769 9491189 GTAATCCTTGAGATCCTGCC 59 NA Drosophila melanogaster 50 CG10841 FBgn0038163 FBtr0082795 3 1 1 80 3R 9458459 9458538 AGGACTACGAACTAATTGCA 58 9458578 9458599 GTATCTTCATAAAGTGCAGCAC 59 NA Drosophila melanogaster 50 CG10841 FBgn0038163 FBtr0082795 1 1 1 80 3R 9459391 9459411 CCAAGATTAAGATACGCATCC 58 9459452 9459530 GTCCACTGTTGAGTTTATCG 58 NA Drosophila melanogaster 50 CG9799 FBgn0038146 FBtr0082763 1 1 1 156 3R 9212601 9212680 CAAAGGAAAGGTTGACAAGC 59 9212464 9212482 GAACTTGCGAACAATGACC 59 NA Drosophila melanogaster 50 CG8773 FBgn0038135 FBtr0082739 2 1 1 102 3R 9122693 9122791 GAGCGAAATCACTGTAACTG 58 9122856 9122874 ATTCCACAGATCGGTATCG 58 NA Drosophila melanogaster 50 snk FBgn0003450 FBtr0112833,FBtr0082716 1 2 2 81 3R 8866930 8866948 ACAATGTCCCTGTCATCTG 59 8866811 8866885 TACTCCTGACATTTGGTGG 58 NA Drosophila melanogaster 50 l(3)87Df FBgn0002354 FBtr0082703 1 1 1 149 3R 8856858 8856876 TTTCTCTACGGAATCAGCG 59 8856989 8857072 GACGGACCATTGATACCTG 59 NA Nonspecific Drosophila melanogaster 50 Octbeta3R FBgn0053959 FBtr0099995,FBtr0099997,FBtr0099998,FBtr0099996,FBtr0099999 3 5 5 80 3R 8338734 8338873 CTTTCTGTGGTATGTCATCAC 58 8338674 8338692 ATCCAGAATAACACCACCA 58 NA Drosophila melanogaster 50 svp FBgn0003651 FBtr0082564,FBtr0082562 2 2 3 123 3R 8126351 8126617 CCTCACAAGTCATTGAGCA 59 8126704 8126722 CACATCGAAGGCAGATAGG 59 NA Nonspecific Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082453,FBtr0082454 3 2 6 135 3R 7418337 7419052 ATTTCATTGGTGATGCACC 58 7418220 7418238 TCTGTGTTCTGACCAAAGG 59 NA Drosophila melanogaster 50 RpL3 FBgn0020910 FBtr0082349,FBtr0082346,FBtr0082348 3 3 5 94 3R 7048443 7049127 CAAGAACTGGTACAAGAGCA 59 7049184 7049202 GGAAGTCATTCTCGATGCT 59 NA Drosophila melanogaster 50 CG14691 FBgn0037829 FBtr0082313 2 1 2 80 3R 6579818 6579898 AATCTAAGCTGGAATTGGTC 57 6579757 6579775 AGTATGTGATTCGAGACCA 57 NA Drosophila melanogaster 50 CG31406 FBgn0051406 FBtr0082235 2 1 2 250 3R 6174760 6174778 TTAAGAAATTGCCGACTGC 58 6175535 6175553 CGACTTCTTTAGGCTTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG11872 FBgn0037806 FBtr0082229 3 1 1 221 3R 6132865 6132883 AATGGTAGTCTGCCTACAG 58 6133223 6133241 GTAGTAGCAGAAGATGCAG 57 NA DesignNoJunction Drosophila melanogaster 50 Kap-alpha3 FBgn0027338 FBtr0082108,FBtr0082106,FBtr0082107 2 3 3 123 3R 5402864 5402942 GAAAGACCAGGATGAAATGC 59 5402760 5402778 CTCATCTGTGTTCGAGTCC 59 NA Drosophila melanogaster 50 ps FBgn0026188 FBtr0111029,FBtr0111028,FBtr0111027 1 3 9 98 3R 5258550 5269739 ATTTCAGTTCCGGTGAGTC 59 5270767 5270786 TCATGTGATACGTTGTCTCG 59 NA Drosophila melanogaster 50 Fps85D FBgn0000723 FBtr0082053,FBtr0082051,FBtr0082052,FBtr0082054 1 4 4 90 3R 5194238 5194256 ATGTGGGAGATCTTCTCCA 59 5194103 5194185 GCATACGATATCCCGTATCG 59 NA Drosophila melanogaster 50 CG16736 FBgn0037668 FBtr0081985 1 1 1 60 3R 5082689 5082710 CTTAGCGATCTCATAACTATGG 57 5082650 5082669 CTGGTGTCATAATGACTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 D1 FBgn0000412 FBtr0081988,FBtr0081989,FBtr0081987 3 3 3 102 3R 5064885 5065221 GAGAATGAAGACGATCAGG 57 5064801 5064819 ATATGTTCAGGTTGACGGA 58 NA Drosophila melanogaster 50 CG9821 FBgn0037636 FBtr0081931,FBtr0081932 1 2 2 178 3R 4644394 4644412 AACATCAGAATGACAACCG 58 4644234 4644252 ATACTGTTGGAATGTGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11753 FBgn0037603 FBtr0081879 3 1 1 141 3R 4478998 4479086 CGAATACCATGAGATCCAC 57 4479191 4479277 GAAGGTGCAACTAAAGTCC 58 NA Drosophila melanogaster 50 Cyp313b1 FBgn0037601 FBtr0081893 1 1 1 130 3R 4470311 4470381 AGCTTATAATGGCTTGACC 57 4470199 4470217 TAAACCCAAACAGTATGCC 57 NA Drosophila melanogaster 50 puc FBgn0004210 FBtr0081792 1 1 1 143 3R 3937016 3946244 CTTTATCGAAGATGCACGG 58 3946351 3946369 ACTTTCACCAGCTTGTAGG 59 NA Drosophila melanogaster 50 CG10919 FBgn0037514 FBtr0081739 2 1 1 104 3R 3584460 3585208 GCAATTCGTAAGAACCATGG 59 3585275 3585293 TCTTGAGGGTTAAGCTTGC 59 NA Drosophila melanogaster 50 Aly FBgn0010774 FBtr0081642 3 1 1 109 3R 2905011 2905029 TTGGTCCGATAAAGAAGGC 59 2904686 2904705 CTGTTTAATGGCCTTCAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1988 FBgn0037464 FBtr0081632 3 1 2 108 3R 2888851 2888870 AATAGAAGCCATCAAACGAG 57 2889018 2889037 GCACTGTCTCTTTAATTCGC 59 NA DesignNoJunction Drosophila melanogaster 50 Antp FBgn0000095 FBtr0081652,FBtr0081650,FBtr0081647,FBtr0081654,FBtr0081653,FBtr0081655 1 6 11 158 3R 2724257 2734249 TTGGTAAGTGTCAAGAACG 57 2724117 2724135 AAATCTTTATCTGGCGCTC 57 NA Drosophila melanogaster 50 bcd FBgn0000166 FBtr0081666,FBtr0081667,FBtr0081668,FBtr0081665 1 4 5 92 3R 2582674 2583204 GACGCTACAGATCTTGGAG 59 2582600 2582618 GCTAAGGCTCTTATTCCGG 59 NA Drosophila melanogaster 50 Rm62 FBgn0003261 FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653 3 6 6 156 3R 1829624 1829748 AGGAGGAGAAATTGAAGACC 59 1829487 1829505 TTGTCACCGTGAATAGCTC 59 NA Drosophila melanogaster 50 Os-E FBgn0010403 FBtr0078655 3 1 1 79 3R 1802263 1802332 AACTGGCGTTACTGATGAG 59 1802202 1802220 TCATATAGCACTTGAGGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34113 FBgn0083949 FBtr0110806,FBtr0110807 2 2 2 81 3R 1699263 1701808 GATCTATCAGATCTGATGCCT 58 1699202 1699220 TCTGATTGACGCTGTAGAC 59 NA Drosophila melanogaster 50 CG1347 FBgn0037363 FBtr0078715,FBtr0078716 2 2 2 183 3R 1503250 1503270 GATATCAACCAGATCCCTCTG 59 1503477 1503744 ATGAGCTGGACTCTAAACG 59 NA Drosophila melanogaster 50 noi FBgn0014366 FBtr0078751 1 1 1 60 3R 1416537 1416555 ACCACGTCTTCGATATTCC 59 1416495 1416517 GTCTCTATGTATATGCGGTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14656 FBgn0037278 FBtr0078878 1 1 1 72 3R 625449 625467 AAGAAGACCTCTCGGAGAG 59 623401 623419 TGAGGTTGTTGTCGTTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 eIF3-S10 FBgn0037249 FBtr0078944 3 1 2 99 3R 258185 258253 CTTATTCGTGAAGTGGTGC 58 258104 258123 GATTCAGTGGGTTGAAATCC 58 NA Drosophila melanogaster 50 snoRNA:Psi28S-3308 FBgn0082973 FBtr0113601 1 1 1 63 3L 832544 832562 AAACCGAAAGACTTGACGT 59 832499 832517 AAGTTTCAATTCGCCACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AGO3 FBgn0086780 FBtr0111170,FBtr0111171,FBtr0111172 2 3 3 117 3L 23560302 23561655 TACGGATCTAAAGGTTCATCTG 59 23561733 23561751 GAACAGAGTCAATGGGAGG 59 NA Drosophila melanogaster 50 CG14453 FBgn0037179 FBtr0078519 3 1 1 215 3L 22687407 22687425 CTACCACCACTTCTTCGTC 59 22687604 22687622 CTTCGACTGTAGCAATCGT 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 AcCoAS FBgn0012034 FBtr0078413,FBtr0100592,FBtr0078414 1 3 3 83 3L 21265831 21265849 TCTAAAGCACAACCTGAGC 59 21265711 21265729 TTGTAATACCAGAGCCAGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG34261 FBgn0085290 FBtr0112456 2 1 2 89 3L 21190337 21190414 AAACACATGATCTCCCACC 59 21190467 21190485 TTCCTTAACTTTGGGCCAG 59 NA Drosophila melanogaster 50 CG6663 FBgn0036969 FBtr0074843 1 1 1 80 3L 20315022 20315041 ACTGATGTAGAAGTCAAGCT 58 20315084 20315159 TAGTCCAGCGTCATATACG 58 NA Drosophila melanogaster 50 CG6680 FBgn0036968 FBtr0074842,FBtr0074841 2 2 2 165 3L 20311902 20311979 CTCATTTCTGAACATCACCAC 59 20312106 20312124 GATCTGGATCACCGAATCC 59 NA Drosophila melanogaster 50 CG17233 FBgn0036958 FBtr0074852,FBtr0074851,FBtr0074850 2 3 3 61 3L 20228033 20228051 CCTTCTATCGCAACATGTC 58 20227930 20227951 GAGGTAGAGTTTCTTAGTTTCG 58 NA DesignNoJunction Drosophila melanogaster 50 Shal FBgn0005564 FBtr0112853 2 1 2 277 3L 19565871 19565890 CTGTACCTGTTATCGTATCG 57 19562902 19565397 AAATTCTCGATCCGTTGTC 57 NA DesignRelaxed Drosophila melanogaster 50 CG32177 FBgn0052177 FBtr0075210 1 1 1 63 3L 17642118 17642136 TTATGAATGCACAACTGCC 58 17642073 17642091 ATTTGAACCTCCTCGTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pep FBgn0004401 FBtr0075199,FBtr0075200 2 2 3 126 3L 17636528 17636546 TTCAGGAACCAGAATCCAC 59 17634313 17634331 GGTTATTGAGACGATTGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7589 FBgn0036727 FBtr0075221 3 1 1 88 3L 17466533 17466796 AAGGATTATGCTGGGAACC 59 17466848 17466866 TTATGTAGCTCACCTTGGG 58 NA Drosophila melanogaster 50 Fit2 FBgn0036688 FBtr0075275 1 1 1 60 3L 17018910 17018930 CTGAAAGAGCTACAGATTACG 58 17018952 17018970 TAATATTCCGCGAGTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pros26 FBgn0002284 FBtr0075360 3 1 1 64 3L 16602953 16602971 TACGTGTCGAACATTCTGG 59 16602907 16602925 GGATCGTAGGAGTAGACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Smn FBgn0036641 FBtr0075395 3 1 1 68 3L 16573668 16573688 TACATGTCCGGCTATTATACG 59 16573620 16573638 TTTCTTTCCGCTAGTGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fax FBgn0014163 FBtr0100477,FBtr0100478,FBtr0075413,FBtr0075412 2 4 4 193 3L 16398660 16398678 ATGAAGGACAAGTGCTTCC 59 16398257 16398431 TCCTTCTCGTTTGACTTGTC 59 NA Drosophila melanogaster 50 CG13064 FBgn0040796 FBtr0089378 2 1 1 168 3L 16273697 16273715 TTATCTACCATCACCCGGT 59 16273847 16273865 AGAGGAACATGTTCGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5151 FBgn0036576 FBtr0075488,FBtr0075487 3 2 2 98 3L 16135211 16141508 CATGCTATCGGTACAGACG 59 16135007 16135150 AATTGATCCCTATCATCGGG 59 NA InUTR Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0075441 1 1 6 60 3L 16070861 16070879 AAGAAGAGCTATGGAACGC 59 16070903 16071931 CTTCTGCAATAGCTTGAGC 58 NA DesignRelaxed Drosophila melanogaster 50 Fbp1 FBgn0000639 FBtr0075749,FBtr0075750 3 2 2 60 3L 14090843 14090864 GATATCGTCCAGAATATTCGTC 58 14090804 14090823 CCACATCTAGATTGATGAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 stv FBgn0086708 FBtr0075806,FBtr0075809,FBtr0075807 1 3 5 83 3L 13474163 13474181 GACATGGACAACATGTTCC 58 13474228 13474324 GAAACCAAAGTGTGAGTCG 58 NA Drosophila melanogaster 50 mirr FBgn0014343 FBtr0075912,FBtr0075911 1 2 2 112 3L 12698330 12698348 ATCTGAAGGAGAACCTGGT 59 12698424 12700490 CAAATCCATGCCATAGCTG 58 NA Drosophila melanogaster 50 CG6038 FBgn0036198 FBtr0076123 1 1 1 173 3L 11704184 11704202 TGCGGAGAAGTTTAACTGG 59 11703973 11703991 CATCCTTCGTATTTGTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 dpr10 FBgn0052057 FBtr0076310,FBtr0076308,FBtr0076309 3 3 3 84 3L 10143596 10144088 TCATCAGGATAAGGTGCTC 58 10143530 10143548 AATGGATTTGGTCTCCTCC 58 NA Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385 1 8 8 111 3L 9825956 9826035 GAGTTAACCGGGACTACAC 59 9826110 9826128 CTTTCCCAAACTTAGCCGA 59 NA InUTR Drosophila melanogaster 50 ATPsyn-b FBgn0019644 FBtr0076405 3 1 2 139 3L 9723624 9723642 GAGATCTACGTCATGGAGC 59 9723837 9723855 TCCTTCCACTCAGATTCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG5087 FBgn0035953 FBtr0076520 2 1 1 80 3L 8992686 8992760 CACTACTGACTGAAACCAC 57 8992804 8992822 GCCACTGAGTAAATACTCC 57 NA Drosophila melanogaster 50 CG5021 FBgn0035944 FBtr0076514,FBtr0076513 1 2 2 140 3L 8960604 8960686 TGAGTCAAAGAACAGTCGG 59 8960790 8960808 ATCATTACCAGCAGTAGCC 59 NA Drosophila melanogaster 50 h FBgn0001168 FBtr0076569,FBtr0100153 2 2 2 108 3L 8670506 8670525 CCCGTATTAACAACTGTCTC 57 8670733 8670751 GTCTTCTCCAGAATGTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6416 FBgn0035917 FBtr0089566 2 1 8 165 3L 8627807 8627826 ATGACAGTATCATGAAGCAG 57 8628171 8630547 TTCTTATAGGGAACTGTGGA 57 NA Drosophila melanogaster 50 Atg18 FBgn0035850 FBtr0076693,FBtr0076692,FBtr0076691 3 3 3 124 3L 8181566 8181584 AATATCTGGTGTCCAGCTC 58 8181672 8182396 AAACGAGTAACCCATCCAG 59 NA Nonspecific Drosophila melanogaster 50 Ect4 FBgn0085402 FBtr0112598,FBtr0112601,FBtr0112602,FBtr0112600 1 4 5 86 3L 8092629 8096003 TCATTAAGGAAGCCCTCTC 58 8096053 8096071 TTTGCACCGTAATACTGGA 58 NA Drosophila melanogaster 50 exex FBgn0041156 FBtr0076751 3 1 1 297 3L 7942377 7943260 CATGTCGAGATCAGAGTCG 59 7943520 7943674 ATTATGACCCATGGGTATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112702,FBtr0112698 3 6 10 81 3L 7693414 7693498 AACTGTACAAGGAAGTCATCC 59 7693353 7693373 TTAGCTTCGAATGGTTCTACC 59 NA Drosophila melanogaster 50 CG8620 FBgn0040837 FBtr0076918 3 1 1 264 3L 7151309 7151328 TGAATTTCTTATCGGGTCAG 57 7151555 7151573 GAGAGTTGAGATTCCTGCT 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 bin FBgn0045759 FBtr0076900 2 1 1 88 3L 6986012 6986030 CCAATGGATACTACGCCAG 59 6986152 6986171 GTAATCGTAGCTAGCAAAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG18769 FBgn0042185 FBtr0076973,FBtr0076970,FBtr0076972,FBtr0076971 3 4 6 164 3L 6544995 6545013 CACCACCCATAGAAGTCTC 59 6555513 6583716 ACATAGATGTCTTCTCCCG 58 NA Drosophila melanogaster 50 Lcp65Ad FBgn0020641 FBtr0076990 1 1 1 66 3L 6136855 6136873 CACGAAGCAATTGTTGTCC 59 6136903 6136921 GAATGCTGTAGGTCTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32407 FBgn0052407 FBtr0077032 3 1 1 97 3L 5916304 5916322 CATCAAGAGCATCATCGGA 59 5916383 5916464 TAAAGGCAGCATCTAGCAG 59 NA Drosophila melanogaster 50 CG5568 FBgn0035641 FBtr0077025 2 1 1 60 3L 5865394 5865414 TCACCATTAGCAATAGTCACC 59 5865487 5865505 ATAATCGAGCTATCCACGG 58 NA DesignNoJunction Drosophila melanogaster 50 Usp36 FBgn0035633 FBtr0077104,FBtr0077103,FBtr0077099,FBtr0077100 1 4 6 83 3L 5765468 5765543 AGAAGAAGGTATCTGCCAC 58 5765590 5765608 TCATGGAGAATCGCTTCAG 59 NA Drosophila melanogaster 50 CG13704 FBgn0035583 FBtr0073353 3 1 1 144 3L 4899024 4899042 TACTTGGTGATATGCCTGG 58 4900438 4900456 CTACACAAACGATGAGAGC 58 NA DesignNoJunction Drosophila melanogaster 50 Awh FBgn0013751 FBtr0073156 2 1 2 83 3L 3860693 3860712 CATTTCAGAATAACGCACAG 57 3860756 3860905 CATCCATAGAGGATTCATGAG 57 NA Drosophila melanogaster 50 PHGPx FBgn0035438 FBtr0073068,FBtr0073066,FBtr0073067 1 3 4 138 3L 3328064 3328082 CTGGTGATCCTCAACTTCC 59 3328251 3328269 TGTCTCCATTCACATCGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12734 FBgn0035411 FBtr0073036,FBtr0073035 1 2 2 140 3L 3183013 3183031 TACAAGATGGTACGCATGG 59 3183134 3183208 TATCAACATCTCACAACGCT 59 NA Drosophila melanogaster 50 CG12182 FBgn0028504 FBtr0072955 3 1 1 100 3L 2597137 2597206 GTCCTTTGTGGAGATCTCC 59 2597055 2597073 ACTCGTAGAGTTCTTGCAG 59 NA Drosophila melanogaster 50 oxt FBgn0015360 FBtr0072904 2 1 1 118 3L 2261464 2261482 GAGCACGTTTACTACATCC 57 2261019 2261037 CATATGGTGGAGAATCGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG13921 FBgn0035267 FBtr0072773,FBtr0072772 2 2 2 86 3L 1749643 1749725 GAGTGGATAAGGAAGGAGTG 59 1749774 1749792 CTCTCAGGCAGGAATAGAG 58 NA Drosophila melanogaster 50 CG9139 FBgn0035202 FBtr0072663 1 1 1 122 3L 1296728 1296746 AGTCTCAGACATTGTGCAC 59 1296830 1296923 GGACTGAAGAGAAATTTGTGG 59 NA Drosophila melanogaster 50 CG17129 FBgn0035151 FBtr0072612,FBtr0072614 1 2 3 117 3L 679822 679909 GCAAGAATTTAGCGACCTG 59 679723 679743 CGTTTCAACCATTTAGCTACC 59 NA InUTR Drosophila melanogaster 50 CG17181 FBgn0035144 FBtr0072563 3 1 1 246 3L 585229 585247 AATCTCCGACTCGAATTCC 59 584941 585022 CTTATCCATGATTGATCTGTGC 59 NA DesignRelaxed Drosophila melanogaster 50 Mtch FBgn0027786 FBtr0072477,FBtr0072478,FBtr0072479 3 3 3 124 3L 185190 185209 TAAATTGGTGGGTTCTCTGG 59 185296 185377 ACTGGACGTACAATTCCTC 58 NA Drosophila melanogaster 50 CG2765 FBgn0035087 FBtr0113119,FBtr0113118,FBtr0072408 2 3 3 212 2R 20849156 20849175 TTATGGACGACACCATACTG 59 20848861 20848879 AGTTCAGCATGTTGTACAG 57 NA DesignNoJunction Drosophila melanogaster 50 Tina-1 FBgn0035083 FBtr0100389,FBtr0072411 3 2 2 61 2R 20828509 20828527 TTAGTCTGCGCTACTTGTC 59 20828466 20828484 ATGGCGCATAATGTATGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pof FBgn0035047 FBtr0072327,FBtr0072328 2 2 2 91 2R 20558283 20558302 TGCAATTTAGACAGAACAGC 58 20558417 20558435 TAGTAAACAACCTGTGGGA 57 NA DesignNoJunction Drosophila melanogaster 50 gammaSnap FBgn0028552 FBtr0072187 1 1 1 80 2R 19935374 19935458 AACTAAGGAGGTACGACGA 59 19935312 19935330 TTTGTCCGTAAGATTCCGT 58 NA Drosophila melanogaster 50 Phm FBgn0019948 FBtr0072203,FBtr0072202 1 2 2 100 2R 19873907 19874867 ATTCCCAGATCGTATACGC 59 19873825 19873843 AAGGTACTTGATTGGCGAG 59 NA Drosophila melanogaster 50 mr FBgn0002791 FBtr0072156 1 1 1 83 2R 19860958 19861051 ACTGGAAACTTGGCTATCG 59 19861096 19861116 TCGCTTATGCTATCCTTAGAC 59 NA Drosophila melanogaster 50 G-salpha60A FBgn0001123 FBtr0072143 2 1 3 153 2R 19833770 19833964 AATACCAAACGCCAATCGA 59 19834159 19834179 CATGTGAAATGTGGATAGCAG 59 NA Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 2 8 8 81 2R 19817734 19817752 TCCATCTTCCTTACTGCTG 58 19817612 19817691 CATCAGTAACCAAGTTAACCC 58 NA Drosophila melanogaster 50 Thiolase FBgn0025352 FBtr0072226 1 1 1 155 2R 19755665 19755683 GAACAGCCAGAATATCGTG 58 19755470 19755488 ATGTAGTCGATGAGCTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG2852 FBgn0034753 FBtr0114458,FBtr0071933 3 2 2 60 2R 18533824 18533844 CAGTCGTGAAATATCCATTGG 59 18533784 18533802 AATATTCACAGCGCTTCAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4329 FBgn0034745 FBtr0071939,FBtr0071940 1 2 2 60 2R 18497692 18497713 GGAAGTTGAGATCCTAAAGGAG 59 18497653 18497672 CATCTGTTTCTGGATGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3074 FBgn0034709 FBtr0071785,FBtr0071784 3 2 2 154 2R 18079061 18079174 CATCTCCAACACTCTATGCT 59 18078926 18078944 ACGTGGTATTGTACTTGCT 58 NA Drosophila melanogaster 50 Rae1 FBgn0034646 FBtr0071683 2 1 1 60 2R 17546896 17546914 GATGTGGAGTATCCGATGG 59 17546854 17546873 GCGAGTATATGATGAGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sdc FBgn0010415 FBtr0071707,FBtr0071706,FBtr0071705 1 3 3 142 2R 17299915 17367605 TCAAGATCAGAAATCGGTG 57 17286794 17286815 GATCTTTCTCTAGATCTTCGTG 57 NA Drosophila melanogaster 50 Treh FBgn0003748 FBtr0071539,FBtr0071538,FBtr0071535,FBtr0071540,FBtr0071537,FBtr0071536 1 6 6 80 2R 16972826 16972845 CTTTAATGCCATGATGGAGG 58 16972887 16972966 GCACTGAAGTACTTATCGAC 58 NA Drosophila melanogaster 50 CG11018 FBgn0034464 FBtr0086472 3 1 1 60 2R 15550396 15550414 ACAATGAAACTAATCCGCC 58 15550438 15550456 TTCTTAGGAGCAGTAGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493 1 1 7 109 2R 15488466 15488484 AGTCAAATGACGACCTACG 59 15461560 15488393 CAATTTCTCCGGAACTGTG 58 NA Drosophila melanogaster 50 CG15904 FBgn0034458 FBtr0086497 1 1 1 60 2R 15400426 15400445 TGAAGGGCTATTTGGTAAGG 59 15400385 15400403 TCCGATTTAAAGACCCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0100392 1 6 15 104 2R 15361451 15361469 ACGTTATTCCTGCAGAGAC 59 15365203 15366258 CTCTGGTTTGACCAGAGTG 59 NA Drosophila melanogaster 50 cora FBgn0010434 FBtr0086507,FBtr0086509 3 2 4 184 2R 15124300 15124318 TTCAATAGGACTCTGTCCG 58 15124563 15125670 TCCTTATCAGCATCCTTCTC 58 NA Drosophila melanogaster 50 l(2)03709 FBgn0010551 FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616 3 6 6 192 2R 14707869 14707887 AGATGATCAACATCTCGCT 58 14708043 14708123 ATGAGTAGGGATACCTGCT 59 NA Drosophila melanogaster 50 CG15092 FBgn0034388 FBtr0086641 2 1 1 215 2R 14646633 14646651 TTATACAGACTAGACGCCG 58 14646373 14646454 AATTGCTTAAACCCTGCTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG18609 FBgn0034382 FBtr0086643 3 1 1 88 2R 14630818 14630837 AGGTGCTATACAATGGTCTC 58 14630687 14630705 AAAGCTTTCTATGCAGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5190 FBgn0034351 FBtr0086696 1 1 1 60 2R 14339743 14339762 TCACTTACAACCCAGATGAC 59 14339783 14339803 TCGTTGTTCATAGTGTCTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12263 FBgn0034346 FBtr0086691 2 1 1 131 2R 14314961 14314981 GAAAGTAAGGATTGGCAAGTG 59 14315074 14315149 CACCACGGATCTTATCACC 59 NA Drosophila melanogaster 50 GstE8 FBgn0063492 FBtr0086676 3 1 1 61 2R 14295952 14295971 CTATTACGAGGAGGCATGTG 59 14295995 14296013 TGAATTTCTTGAGGAGGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18107 FBgn0034330 FBtr0086663 2 1 1 77 2R 14272155 14272174 CAATCGTCACTGTCTTTGTG 59 14272278 14272296 TAACATTTCCTGGATCGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 3 8 8 99 2R 14032395 14032483 AGGAAAGAATTCTGAGAAGC 57 14032544 14032563 CTCAATCATCGGATACAGAC 57 NA Drosophila melanogaster 50 eIF3-S8 FBgn0034258 FBtr0086836 2 1 1 237 2R 13553560 13553578 AAGTCAACAAAGATGTCGC 58 13553840 13553859 TCAGGGTATTGGGAATATCC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Psi FBgn0014870 FBtr0087074,FBtr0087072 1 2 3 145 2R 12753591 12753667 ACGTTATGCAACGAAATGG 59 12753464 12753485 GGGAACTAGGAATGTAATTTCC 58 NA Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087272,FBtr0087270 3 2 7 91 2R 11845435 11845506 GATCTGCCTTATTCCAAGGA 59 11845363 11845382 ACCTCGCAGAATATGATGAC 59 NA Drosophila melanogaster 50 sli FBgn0003425 FBtr0087304,FBtr0087302,FBtr0112831 2 3 5 138 2R 11773782 11773800 TGACCGTGATATACGAGAC 58 11772979 11773607 TTGTTGGAGATGTCCAGTC 59 NA Drosophila melanogaster 50 CG30091 FBgn0050091 FBtr0087277 1 1 1 80 2R 11569378 11569396 ATCCCAAATTCGTTAGCCT 58 11569440 11569525 GAATCGATTCCGTGTACTG 57 NA Drosophila melanogaster 50 IM10 FBgn0033835 FBtr0087654 1 1 2 80 2R 9295384 9295402 CACTGTCACAATCGATAGG 57 9295445 9295520 TTGAAACCGTTTCAGTAGTG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 Mp20 FBgn0002789 FBtr0005009,FBtr0087745 2 2 2 81 2R 9134625 9134644 CATCAACAACTTCCAGAAGG 58 9134688 9134706 CTTCTCGTACAGATCGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nacalpha FBgn0086904 FBtr0087860,FBtr0087858,FBtr0087859 3 3 3 70 2R 8647773 8647791 GGAAGATCATGCTGAAGCT 59 8647721 8647739 CTTCGACTTCCTGATCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30048 FBgn0050048 FBtr0100374,FBtr0087919 3 2 2 60 2R 8284191 8284211 ATTCCCTTGAGAAGTATTCCC 59 8284233 8284251 GCTGCATATGTCCTTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8841 FBgn0033713 FBtr0087964,FBtr0087965 1 2 3 84 2R 8212163 8212181 ATACTGTTGCTCCTATCGG 58 8212027 8212045 CAGGTATATCCATGGGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG13163 FBgn0033712 FBtr0087896 1 1 1 60 2R 8209537 8209557 TCTCGATTATTCCAGTAGCTC 58 8209579 8209597 ATTGTATTGGAAGTGGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8964 FBgn0033674 FBtr0088027 2 1 1 135 2R 7911662 7911769 TCAAATGGATGAGGGAAACC 59 7911546 7911564 ATTTGACCCTGGCTATTGG 59 NA Drosophila melanogaster 50 CG8298 FBgn0033673 FBtr0088043 1 1 2 147 2R 7876824 7876898 CGCTTTCTGATATACTCAACG 58 7877007 7877081 TATAGGCGGTCTCTATGCA 59 NA Drosophila melanogaster 50 RnrS FBgn0011704 FBtr0088046 1 1 1 62 2R 7871809 7872335 ATGTACAAGAAGGCTGAGG 58 7871765 7871783 AAGGTCCTTGGACAAATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG9080 FBgn0033593 FBtr0088191 2 1 1 300 2R 7129653 7129671 ATGAAACAGTACCTGGTGC 59 7129371 7129389 ATCCACCTCTGGGATATCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13229 FBgn0033579 FBtr0088206 3 1 1 86 2R 7028205 7028312 CTCTACAGATTCAACTTCTGGA 59 7028140 7028160 CATAAGTACTGCACTGATCAC 58 NA Drosophila melanogaster 50 mthl13 FBgn0050018 FBtr0088220 2 1 1 89 2R 6679692 6679713 CGTATTCTGCCTATTTCTTGAC 59 6679760 6679861 ATGATATAACCTGTCAGTGAGC 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0089342,FBtr0089349 1 2 26 186 2R 6419759 6419777 TGAGGATTTGACACTGGAC 59 6408769 6419548 GTCGTACTTCAGGTCTTGG 59 NA Drosophila melanogaster 50 CG12901 FBgn0033513 FBtr0088354,FBtr0088353,FBtr0088355 1 3 3 79 2R 6244034 6244052 AGAAGGAGAAGGATAAGGG 57 6243973 6243993 TTCTTATCCCTATTCCTTGCC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Hr46 FBgn0000448 FBtr0088368 1 1 4 161 2R 6096768 6096955 AATTACAACAGCTACAGCG 58 6096625 6096643 ATCGATTATTGTACTGCGC 58 NA Drosophila melanogaster 50 CG8258 FBgn0033342 FBtr0088683 2 1 1 123 2R 4793179 4793197 GACAAAGTTTGCATCGAGG 59 4793010 4793031 CAATGTCATCCATGAAGTTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 stmA FBgn0086784 FBtr0088715,FBtr0100111,FBtr0088716 2 3 3 113 2R 4618186 4618264 TTTATCCTCGGAATCCAGC 59 4618091 4618109 ACTAACACGCGAGATTAGC 59 NA Drosophila melanogaster 50 CG11635 FBgn0033283 FBtr0088739 2 1 1 70 2R 4246441 4246459 CAAGAACGGTCCTTACCAG 59 4246493 4246511 CGCAGATTATCTTCTTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12159 FBgn0033232 FBtr0088889 3 1 2 166 2R 3803413 3803431 CTGCTGCTTATTATGAGGG 57 3802674 3802904 TAAACCTGAACCAACTCGA 58 NA Drosophila melanogaster 50 CG1358 FBgn0033196 FBtr0088950,FBtr0088949,FBtr0088948 3 3 3 95 2R 3490720 3490922 TAATAACCCGCTACTATGGC 59 3490644 3490662 AACTGCCTGGGAATATGAG 59 NA Drosophila melanogaster 50 blow FBgn0004133 FBtr0088952 2 1 1 108 2R 3472588 3472606 AAACCAACAACTACCAAGC 58 3470371 3470389 ATAGGTTCGAGGTGTTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088988,FBtr0088989,FBtr0088990 3 3 9 92 2R 3362872 3362952 AATAAATGCAGGAGATCGG 57 3361300 3361318 GGTTGTGATGTGAAGATCC 58 NA Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089010,FBtr0089012 2 6 7 107 2R 3293620 3293715 CAAATATGACTTCAAGCCAGC 59 3287508 3293552 CCGGAACTTTCAGAATTTGG 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111081,FBtr0111069 3 2 60 82 2R 3229661 3229679 CGGATTCTATTCGTGTCAC 57 3219874 3229615 ATCTGGGAGGTACATTCAC 58 NA Drosophila melanogaster 50 Gadd45 FBgn0033153 FBtr0089049 1 1 1 239 2R 3136988 3137006 GATCGATATGGCCATGGAG 59 3137209 3137227 TTGATCACGTAGATGTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11060 FBgn0033149 FBtr0089045 3 1 1 60 2R 3064395 3064413 AGCGATAGCTTTCAAGAGG 59 3064437 3064455 CCTGACTCTCGACAATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Spn4 FBgn0028985 FBtr0086197,FBtr0086196 3 2 11 108 2R 2764774 2764792 TCAGCCATCATACACAAGG 59 2764586 2764604 CCTCAGGCGACATAATAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Epac FBgn0085421 FBtr0112636,FBtr0112635 1 2 2 92 2R 2653106 2653124 AATGGATCCGTTCTTGGAC 59 2652233 2653050 CAGTGGAAGTAATTGGCCA 59 NA Drosophila melanogaster 50 Vha16 FBgn0004145 FBtr0086150,FBtr0086153,FBtr0086151 3 3 4 81 2R 2519556 2519575 CTTCTTCGGAGTTATGGGAG 59 2515389 2515407 GGTACCAGACTTAGCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7882 FBgn0033047 FBtr0085965,FBtr0085966 3 2 2 184 2R 1846716 1846792 TCTTCATCGAGAGCTACAG 58 1847006 1847024 AATAAAGTTGCACAGCCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG11163 FBgn0025693 FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053 1 4 4 80 2R 1662571 1662644 GCATCTCGTTACAGACTCC 59 1662509 1662529 TTATATCTTGGGCTGGATACG 59 NA Drosophila melanogaster 50 vlc FBgn0010633 FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039 1 4 4 105 2R 1591797 1591817 CCAGATATCTCCGAAGATACC 58 1591884 1591954 TATTGTGGCAAAGACCCTC 59 NA Drosophila melanogaster 50 vlc FBgn0010633 FBtr0086041,FBtr0086042,FBtr0086040,FBtr0086039 2 4 4 106 2R 1591797 1591817 CCAGATATCTCCGAAGATACC 58 1591885 1591955 TTATTGTGGCAAAGACCCT 59 NA Drosophila melanogaster 50 CG41120 FBgn0069931 FBtr0111231 1 1 1 72 2L 22667742 22667760 TGTTAGGAATTGCTGGTGG 59 22667688 22667707 CGTAAGGCATTAATACCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17493 FBgn0040010 FBtr0111255 1 1 1 60 2L 22443016 22443034 TTGAGCTGTTTCACAAACG 59 22443058 22443076 ACACAAGTTTACGGTTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6675 FBgn0032973 FBtr0085936 2 1 1 60 2L 22109674 22109692 CTCTTTCAATCGGGATGTG 58 22109716 22109734 AACGATCACATTGTACTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6691 FBgn0032971 FBtr0085935 1 1 1 60 2L 22080583 22080602 CCATGGAACAGTTTAAGGAC 58 22080624 22080643 TGAATGCTTTCCTGACTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9248 FBgn0032923 FBtr0081470 2 1 2 174 2L 21159050 21159068 GGAGAACGCAAATAGAACC 58 21159280 21159298 CTTGTACTGATGCAGTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG33322 FBgn0053322 FBtr0081455 2 1 1 81 2L 20815067 20815148 CCAGATCGACTACATGAGC 59 20815004 20815022 AATGTATTGACCCTGGTCC 58 NA Drosophila melanogaster 50 CG18094 FBgn0032791 FBtr0081243 3 1 1 60 2L 19490661 19490679 ACTTCCTATGCATTGAACC 57 19490700 19490721 GATCTTCTATAGGATCGAAGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pax FBgn0041789 FBtr0081213,FBtr0081212,FBtr0081210 1 3 6 177 2L 19410626 19426206 GATGCTCTATTAGCCGACC 59 19410401 19410485 AGTGCTCTTGATACACCTG 58 NA Drosophila melanogaster 50 CG17544 FBgn0032775 FBtr0081218,FBtr0081217,FBtr0081216 3 3 3 84 2L 19392115 19392133 CAGTGAGGAAGCAATTTGG 59 19391948 19392069 GGAAAGATGCGATATTGATGC 59 NA Drosophila melanogaster 50 CG10750 FBgn0032769 FBtr0081196 1 1 1 86 2L 19301275 19301293 CTACAACCTGGACAAGGAG 59 19301343 19301415 TAGCTGGGAACAATGTCTC 58 NA Drosophila melanogaster 50 mib2 FBgn0086442 FBtr0081142 2 1 1 99 2L 19037964 19038095 TCAAGTTGGAGTTCGTCAC 59 19038158 19038176 GTGATAGTTGGGACACTGG 59 NA Drosophila melanogaster 50 CG31751 FBgn0086909 FBtr0081092 2 1 2 62 2L 18679132 18679150 CGATCGCAACTTCTTTGTC 59 18682279 18682297 CAGTGGGTTACAATGAGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15133 FBgn0032619 FBtr0080948 2 1 1 81 2L 16895764 16895782 TTCACCACCTAAGACTAGC 58 16895826 16895905 CATTTCATCCGGTATCTCTG 57 NA Drosophila melanogaster 50 CG31809 FBgn0051809 FBtr0113414 3 1 1 81 2L 16853857 16853965 TCATGGATTACAGTACGCC 59 16853794 16853813 CATTCGCTTAAAGAGTTGGT 58 NA Nonspecific Drosophila melanogaster 50 CG31782 FBgn0051782 FBtr0080938 2 1 2 111 2L 16702251 16728201 CGAATATGGATCCTCGTATACC 59 16702161 16702179 TTGTAACTACAGTAGCGCG 59 NA Drosophila melanogaster 50 CG31815 FBgn0051815 FBtr0080870 1 1 1 60 2L 16606949 16606967 CGTCAGATGAACCAATTCC 58 16606991 16607009 ACCTTTGGATAGTTCTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dac FBgn0005677 FBtr0100399,FBtr0080877,FBtr0080879,FBtr0080875,FBtr0080878,FBtr0100400,FBtr0080876 2 7 7 116 2L 16467746 16468063 AAACTATTCCGAATCCCTGG 59 16467649 16467667 TTCTTGTAGTATGCCGTCG 59 NA Drosophila melanogaster 50 cni FBgn0000339 FBtr0080849,FBtr0080848 1 2 2 98 2L 16309918 16310008 CATATACGGCATGGTTTATTCG 59 16309841 16309859 ACAACTAATACACGACGCT 59 NA InUTR Drosophila melanogaster 50 CG31822 FBgn0051822 FBtr0080813 2 1 1 86 2L 15836977 15836995 AGTTCAAGGAATCTTTGGC 57 15836815 15836833 TGTGCCACATACTAATCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CycE FBgn0010382 FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775 3 5 5 98 2L 15729492 15729578 ATACATTTAGTCGGGAGATGG 59 15729414 15729432 AGATCACTCGGAAGAATGG 58 NA Drosophila melanogaster 50 CG31771 FBgn0028873 FBtr0080605 3 1 1 117 2L 14040737 14040755 AGAAGAGACGGACAAAGAG 58 14040360 14040378 CATCCGTATCCGTATCTCC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 sec71 FBgn0028538 FBtr0080537,FBtr0080538 1 2 2 95 2L 13798752 13798770 TTTCTTCAAGATGTACGGC 57 13799015 13799033 TAGTAGTTGGAAACGTGGG 58 NA DesignNoJunction Drosophila melanogaster 50 Pect FBgn0032482 FBtr0080440,FBtr0080441,FBtr0080439 2 3 4 104 2L 13208266 13208284 CATCAAATGGGTGGATGAG 58 13208351 13208430 GTAATGTCATCTCCATGCAC 58 NA Drosophila melanogaster 50 CG5204 FBgn0032473 FBtr0080433 2 1 1 82 2L 13162315 13162334 ACTGATCTCAGTTATTGCGG 59 13162436 13162454 AAATCTTCGGGTTCCTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 nub FBgn0085424 FBtr0112642 3 1 2 120 2L 12614101 12614120 GATAAGGTCCTGGAACTGAC 59 12614201 12622983 GACTGATATCATTTGGGTCCT 59 NA Drosophila melanogaster 50 Patsas FBgn0029137 FBtr0080363,FBtr0080362 3 2 2 60 2L 12102830 12102848 AAATGTGCTCCTCTTTGAG 57 12102788 12102806 GAAGATGTCGTCCAAACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SCAR FBgn0041781 FBtr0080148 3 1 1 90 2L 10981420 10981499 TTCGAGATGGTATTACTCTACG 58 10981550 10981568 AAGATTGAAGCCACATCCA 59 NA Drosophila melanogaster 50 Nos FBgn0011676 FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486 2 9 10 161 2L 10831341 10831359 TGTCACAGGATTATCGGTC 58 10826070 10830602 TCGAGCAGGAAAGAATCTC 59 NA Drosophila melanogaster 50 KdelR FBgn0022268 FBtr0080023,FBtr0080021,FBtr0080022 3 3 3 60 2L 10427496 10427515 TCAATCATGAGTTTACCGTG 57 10427537 10427556 ACCGATTCCAAATAGATCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS27A FBgn0003942 FBtr0080016 2 1 1 113 2L 10410037 10410247 CTGAAATACTACAAGGTTGACG 59 10410321 10410339 GTAGTGACGATCTTCGTGG 59 NA Drosophila melanogaster 50 CG18854 FBgn0042174 FBtr0079919,FBtr0079920,FBtr0079918 2 3 3 81 2L 9789414 9789432 GCCTCTACTGACAGATGAC 59 9789291 9789371 AACTATTAGGCAGAGGTTTGG 59 NA Drosophila melanogaster 50 ppk11 FBgn0065109 FBtr0100831 2 1 1 81 2L 9773422 9773440 CGTGTCTACTACGACTCAG 58 9773284 9773380 CAAAGGTTCCTATGAATGTCAG 59 NA Drosophila melanogaster 50 Ggamma30A FBgn0028433 FBtr0079796,FBtr0079797,FBtr0079795 1 3 3 82 2L 9272595 9291061 AATCCATAGCAGAAATGCG 58 9291107 9291125 ATTGTTCTTCTTATCCGGC 57 NA Nonspecific Drosophila melanogaster 50 CG32982 FBgn0052982 FBtr0079771,FBtr0110960,FBtr0079772 2 3 3 169 2L 9156576 9161132 GGGACAGTTTATCTTCAAGGT 59 9161263 9161397 TCATTGTGCATTCCTCCAG 59 NA Drosophila melanogaster 50 CG17906 FBgn0032086 FBtr0079762 2 1 1 82 2L 8994954 8994972 TGGATCTCACACTACACCA 59 8995015 8995098 TCTGGCATGGTTAATGATAGAG 59 NA Drosophila melanogaster 50 Hnf4 FBgn0004914 FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846 1 4 4 99 2L 8688854 8688935 TCTTCTTCGATCCCAATGC 59 8688773 8688793 CGATCTGATATGTAGTCCTCG 59 NA Drosophila melanogaster 50 CG13394 FBgn0032037 FBtr0079717,FBtr0079718 2 2 2 63 2L 8391199 8391291 CAAAGCGACTTACAAGGGA 59 8391154 8391172 AGAAGGTACTCATCCACGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG8419 FBgn0031999 FBtr0079589 2 1 1 81 2L 8208388 8208459 TTGATTTGGAGAAACGCAC 58 8208503 8208522 TCTACATCAGCACCAATCTC 59 NA Drosophila melanogaster 50 Rapgap1 FBgn0085403 FBtr0112604,FBtr0112605,FBtr0112603,FBtr0112606 2 4 4 94 2L 7499877 7499898 CGGATAAATTCAGTGTGAACAC 59 7499746 7499824 ACTGCAGGTATTTAGATTGGG 59 NA Drosophila melanogaster 50 Spn27A FBgn0028990 FBtr0079321 3 1 1 60 2L 6672928 6672946 CATGGCATCTACTGAAGAC 57 6672886 6672906 GAGATGATCACATTCTTGTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9107 FBgn0031764 FBtr0079226,FBtr0079225 3 2 2 60 2L 6024121 6024139 GAACCCTTCTCCAACACTC 59 6024079 6024097 TCTCGAACACTATGTAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9016 FBgn0031751 FBtr0079151,FBtr0079152 3 2 2 81 2L 5923198 5923216 TAGCACCAAAGAGTTAGCG 59 5923135 5923154 CTATTCCGGTAAGATGTGGA 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG31646 FBgn0051646 FBtr0079114 2 1 1 97 2L 5641946 5645467 TTCCCGAGAAAGATCTTCC 58 5641867 5641885 CAAATTGTCGACTACGCAC 59 NA Drosophila melanogaster 50 CG6907 FBgn0031711 FBtr0079096 3 1 1 63 2L 5524884 5524902 GTCAAGACTACCTTGTGGG 59 5524929 5524947 AGAACTCCTCGTCAATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cl FBgn0000318 FBtr0079095 2 1 1 137 2L 5520502 5520520 CAAGGACGAGAAAGGAGAG 59 5520694 5521147 AAATCCTTCCAGTATGCCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Msp-300 FBgn0053715 FBtr0091707,FBtr0091705 1 2 3 92 2L 5111000 5111021 AGTCATATCAAGGAGAAACGAG 59 5117629 5121684 TGGAACACGCTTCAATAGG 59 NA Drosophila melanogaster 50 CG31919 FBgn0031674 FBtr0079007,FBtr0079006,FBtr0100270,FBtr0079008 2 4 4 116 2L 5047102 5047120 AGATGGATCCACATAGTGC 58 5047198 5047284 CGTTATAGATAGCTGCATTCC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG31917 FBgn0031668 FBtr0079037 2 1 1 94 2L 5010273 5010291 GTCATGTCCAAGAAGTTGC 59 5010197 5010215 TTGACGAGAAAGTATTCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jon25Biii FBgn0031653 FBtr0079056 3 1 1 61 2L 4950669 4950687 AGGTCTTCGTAAAGGACCT 59 4950626 4950644 GTATCCGTTGGTGATACGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15630 FBgn0031627 FBtr0077418 3 1 1 67 2L 4735849 4735867 GATTATGCTTTCGAGGAGG 57 4735719 4735737 ACCAGGTAAACGGTATCTG 58 NA DesignNoJunction Drosophila melanogaster 50 tim FBgn0014396 FBtr0114526,FBtr0077564,FBtr0077565,FBtr0100349,FBtr0077567,FBtr0114527,FBtr0100350,FBtr0077566 1 8 8 80 2L 3503185 3503260 TGAAGATGAGGACGAAGTG 59 3503123 3503144 GGTTGTTGTGTTAAGTTTAGGG 59 NA Drosophila melanogaster 50 Su(dx) FBgn0003557 FBtr0077824,FBtr0077823,FBtr0077822 1 3 3 80 2L 2040349 2040429 TCACAGTGCTGATTACACC 59 2040473 2040491 CAAGCATGGCATCTTTACG 59 NA Drosophila melanogaster 50 CG4629 FBgn0031299 FBtr0077990,FBtr0077992,FBtr0077991 3 3 3 135 2L 1085632 1085650 CGTTTACCTGGTCACTGAG 59 1085301 1085535 CAGACTGTGCATATGTTTGAC 59 NA Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437 3 6 10 141 2L 110859 110877 TATGATGACTCCTCCAAGG 57 112011 112699 ACATGATACCCTGATCTCC 57 NA Drosophila melanogaster 50 CG40143 FBgn0058143 FBtr0113807 1 1 1 60 XHet 7119 7137 ACAGACACAATTACACCAG 57 6976 7098 CAAATGTATCTATGAGTGCTCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 tty FBgn0015558 FBtr0077225,FBtr0077224 2 2 2 97 X 21207506 21207819 GATGAGATCTACCTGGAGAG 58 21207428 21207447 CGGGTCATGAGATAGAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1631 FBgn0031101 FBtr0077297 2 1 1 94 X 20198736 20198813 GATAGCGAAGATGAGAGCT 58 20198871 20198889 AAGTCGCTGTCTGATTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7280 FBgn0030966 FBtr0074655 2 1 1 77 X 18741341 18741422 CGTAAAGGGTCTTTCATGG 58 18741282 18741300 CTTAGAATGTCGCACAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9782 FBgn0030763 FBtr0074288 1 1 1 210 X 16510370 16515373 TACTTCAACATCTGCCTGC 59 16510178 16510196 TTTCCTCGTCATACTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dah FBgn0015926 FBtr0074007 3 1 1 136 X 15224065 15224145 GATATGCGACAGCTATCAC 57 15224245 15224263 AATAGCATCTGTCGCTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12540 FBgn0030570 FBtr0073929 2 1 1 296 X 14390352 14390579 AAACAGGAAAGTTCAACGC 59 14390964 14390982 GTCGTAGTACAAACACTGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG1837 FBgn0030329 FBtr0073551 3 1 1 123 X 11612686 11612706 GGTCGAGAACCTTAATATTGG 58 11612791 11612870 CAAACGCTGACAATGACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12065 FBgn0030052 FBtr0071217,FBtr0071215,FBtr0071214,FBtr0071216 1 4 4 95 X 8481474 8481494 ACTACACGGACTATAAGAAGC 59 8481550 8481631 GTTTCTCCTTGCTATTGCTG 59 NA Drosophila melanogaster 50 CG32732 FBgn0052732 FBtr0071039 3 1 1 60 X 6853052 6853072 TTTCATCTACTATGGCGATCG 59 6852959 6853030 GTCTACGAAACCATTGTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG40188 FBgn0058188 FBtr0113822 1 1 2 169 U 2233171 2233189 ACAGACGAGATCTCTTTGC 59 2233322 2233401 TACATTGCAAAGGTTGGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG41245 FBgn0085571 FBtr0114014 3 1 1 250 U 1551683 1562191 AAAGAACTGGAGGAATTGG 57 1567259 1567277 GCTATTCGCTCAGTAACAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG41314 FBgn0085609 FBtr0114053 1 1 1 139 U 1495088 1495106 ATTGAAATACTCGCCACAG 57 1492547 1494985 ATATTGGTCGTTGCTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1674 FBgn0039897 FBtr0089118,FBtr0089119,FBtr0089117 3 3 4 84 4 254903 254921 CCAACATCCATTGCATCTG 59 254969 257036 TTTGGTCATTGACATTCGG 58 NA Drosophila melanogaster 50 CG33978 FBgn0053978 FBtr0100021 1 1 1 81 4 185015 185100 CACTTTCTCAAAGACTCCAG 58 184953 184971 CTGTCCTCGATCAATTGTG 58 NA Drosophila melanogaster 50 CG31371 FBgn0051371 FBtr0085687 1 1 1 157 3R 26327965 26328121 AATATCCAAGTCCACGGAG 58 26327826 26327844 GATCTGAACTGACAGGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113301,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 2 8 8 81 3R 24639526 24639610 TTGACAATGAGTCTGATGC 57 24639654 24639673 CAATATCCGTAGCAGTAAGG 57 NA Drosophila melanogaster 50 CG10011 FBgn0039590 FBtr0085319 2 1 1 60 3R 24435946 24435964 CATCTCTAGTCAGTCCACG 58 24435841 24435859 TTGCTGTGTAAAGGTAAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG5028 FBgn0039358 FBtr0113292,FBtr0084901,FBtr0113289,FBtr0113291,FBtr0113290 3 5 5 126 3R 21507753 21507830 AACTACGGTGACCATTACG 59 21507919 21507938 CCAGATGGTTCAACATATCG 58 NA Drosophila melanogaster 50 CG6631 FBgn0039206 FBtr0084645 1 1 2 81 3R 20358456 20358475 GATTGTGCTGAATTAACGGA 58 20358516 20358593 GTATAATGTTAGCATCGGTTGG 59 NA Drosophila melanogaster 50 CG6129 FBgn0039152 FBtr0084545,FBtr0084544 1 2 2 91 3R 19953062 19953140 AGAACCAGATCTCAATGCT 58 19953195 19953213 TTCTCTATTGGCCTTCGAG 58 NA Drosophila melanogaster 50 Pros26.4 FBgn0015282 FBtr0084520 3 1 1 60 3R 19756429 19756448 AGAGACTTACGCAGATATCG 58 19756388 19756406 AACAGACTCCTTGATCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17623 FBgn0038999 FBtr0084299 2 1 1 76 3R 18491006 18491024 TAAATCGGATGCGGAATCC 59 18491061 18491082 GCTTGTTTGGATAGTACTATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17270 FBgn0038828 FBtr0083994 1 1 1 65 3R 16643148 16643233 TACATTCACTACAAGCCGG 59 16643101 16643119 ATAGAAGACCATGGTGAGG 58 NA DesignNoJunction Drosophila melanogaster 50 Cyp12a4 FBgn0038681 FBtr0083731 2 1 1 267 3R 14962155 14962234 TTGATACGACATCGAGCAC 59 14962465 14962483 TTCACGTAAGTTCCAGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG7131 FBgn0038598 FBtr0083598 3 1 2 112 3R 14113252 14113327 AAAGCTGTCCTATCAACCG 59 14113158 14113176 AATCGTGTTTCTGAGTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG14383 FBgn0038102 FBtr0082724 1 1 1 60 3R 8814027 8814048 GAAACTATATGCTACTGCTCCT 59 8813988 8814007 GGATAACCCAACGATTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5844 FBgn0038049 FBtr0082591 1 1 1 75 3R 8260856 8260874 ATGAGGTGATGTTCACGTC 59 8260913 8260990 TTGAAGGTCTGGTTGAACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3281 FBgn0037967 FBtr0082511 2 1 1 119 3R 7788214 7788285 ATTGAAGTGGACATGGACG 59 7788113 7788131 TGTAAAGTTTCATGGGCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ugt35b FBgn0026314 FBtr0082375 2 1 1 61 3R 6995716 6995736 TCAGAGATGTGTTTATCCCAG 59 6995603 6995696 GCTCAGTTCGTTTATCAATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31373 FBgn0051373 FBtr0082318 2 1 1 109 3R 6534604 6534779 CCGTCTTCATTAATCCGGA 59 6534513 6534531 CTTATCGTACCGTTCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10098 FBgn0037472 FBtr0081563 1 1 1 292 3R 2950431 2950449 GAACTTTGATCATCGGTCG 58 2950773 2951147 AGTCAAGCGCACTATATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1129 FBgn0037279 FBtr0078871,FBtr0078870 2 2 2 75 3R 639630 639648 GTGGAGTTTGCCAATAAGC 59 639686 639967 AAATAACCTGACGACATCCC 59 NA DesignNoJunction Drosophila melanogaster 50 cpx FBgn0041605 FBtr0100500 3 1 15 210 3R 117958 117976 TAACGCTGTCACTCTTACC 59 121000 121299 TGATGTTGTACTTATCGCG 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 nrm FBgn0005629 FBtr0111148,FBtr0078565 3 2 2 80 3L 22995473 22995492 AAGTTCAATATCCCTATCGC 57 22995535 23000437 ATGGTGGTATCAACTTGTG 57 NA Drosophila melanogaster 50 Arf79F FBgn0010348 FBtr0078575,FBtr0078573,FBtr0078574,FBtr0112858,FBtr0112859,FBtr0078571,FBtr0078572 3 7 7 111 3L 22863021 22863042 GGAAATGAGGATATTGATGGTC 58 22862864 22862951 CACATTGAAACCAATGGTAGG 59 NA Drosophila melanogaster 50 CG33169 FBgn0053169 FBtr0078549 3 1 2 84 3L 22857221 22857239 TTCGTCTACTTGAAGACCC 58 22857287 22857305 ATTCAATTGCACTGACCAC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG11249 FBgn0037115 FBtr0078429 3 1 1 92 3L 21665738 21666029 GAGATCAAACACCATCTATTGG 58 21666082 21666100 CTTTACGATCAGGCTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6014 FBgn0027542 FBtr0078346 1 1 1 193 3L 21404666 21412712 TCTTAACCAATAGCCCGTC 59 21412866 21412887 GATAAATACTTGACAGCACCAC 59 NA InUTR Drosophila melanogaster 50 CG12971 FBgn0037078 FBtr0078402 1 1 1 277 3L 21349321 21349581 CTTAAAGCGAAGGTCTCCA 59 21348877 21348895 CATTTGGACGCATGTACTC 58 NA DesignNoJunction Drosophila melanogaster 50 AlCR2 FBgn0036789 FBtr0100242,FBtr0089387 1 2 2 103 3L 18480884 18480902 ATCAGGAAACTTCACACCG 59 18480586 18480817 ATGTACGCACTTATGACCG 59 NA DesignNoJunction Drosophila melanogaster 50 Syx8 FBgn0036643 FBtr0075365 1 1 1 83 3L 16579603 16579621 GACTCGAGGTTCTATCAGC 59 16579485 16579556 TATTGTTCTGGTCCTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5392 FBgn0036463 FBtr0075671 2 1 1 69 3L 15004342 15004360 TAGTGAGGCAATCGATAGC 58 15001089 15004310 ATCATATGATTCTCCGGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 bmm FBgn0036449 FBtr0075699 2 1 1 88 3L 14770855 14771040 AATTCACGCTCTATGACCAG 59 14770786 14770804 CACAAGGATTGAAACACGG 59 NA Drosophila melanogaster 50 CG6149 FBgn0036158 FBtr0076180 2 1 1 284 3L 11428586 11433333 AAAGCATAGCTCCATCGAC 59 11428320 11428338 AGAGATCTCAATCGGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CalpB FBgn0025866 FBtr0076343 2 1 1 178 3L 9883648 9883884 CTTATGAAGCACTCAAGGG 57 9884026 9884044 TTCCAGAACATGTGGATCC 59 NA DesignNoJunction Drosophila melanogaster 50 RpS17 FBgn0005533 FBtr0076479 3 1 1 229 3L 9422422 9422809 TCGAGCAACATAATGGGTC 59 9422152 9422171 AACTTGATGGAGATACCACG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 Shc FBgn0015296 FBtr0076458 3 1 1 64 3L 9420378 9420396 ACCTCAATGAAATCCCTGG 59 9420424 9420504 ACTCGATTGATGCACTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Shc FBgn0015296 FBtr0076458 1 1 1 62 3L 9420380 9420398 CTCAATGAAATCCCTGGAC 57 9420424 9420504 ACTCGATTGATGCACTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7066 FBgn0035869 FBtr0076707 2 1 1 79 3L 8298065 8298136 GAAAGTGGTCTAGATGCGA 59 8298179 8298197 AGCAGAGGAAAGCAATAGG 59 NA DesignNoJunction Drosophila melanogaster 50 pbl FBgn0003041 FBtr0112817,FBtr0076772,FBtr0076773,FBtr0076774,FBtr0076771 2 5 5 80 3L 7895286 7895304 TTTACAATTACGCGATGCG 59 7895150 7895242 GATTGACCAGCTTTGTCAG 58 NA Drosophila melanogaster 50 Tsp66A FBgn0035786 FBtr0076861 3 1 2 250 3L 7460902 7460922 GGAGATGTACTTCGAATATGG 57 7461194 7461272 TACCTCAATGCATATGACTG 57 NA DesignRelaxed Drosophila melanogaster 50 Cpr65Az FBgn0035686 FBtr0076996 1 1 1 69 3L 6154287 6154364 CCGATGGTTCTTATATGTACGA 59 6154394 6154412 TTCAAGTAGCCCATCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acp65Aa FBgn0020765 FBtr0077021 1 1 1 98 3L 6145673 6145772 AATTGATGCTAGTCGTTGG 57 6145593 6145611 TGTTCTCCGATTCGTACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33514 FBgn0053514 FBtr0091456 1 1 1 60 3L 4365741 4365760 GGACTATTTCCGAGTTACCA 58 4365783 4365860 ACCCGTTTGATGAATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL28 FBgn0035422 FBtr0073097,FBtr0073095,FBtr0073096,FBtr0073098 2 4 4 87 3L 3221936 3221954 CAATTGGTTGATCATTCGC 57 3221695 3221885 CAAGTTGTTTGGCTCTGTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12734 FBgn0035411 FBtr0073036,FBtr0073035 1 2 2 140 3L 3183013 3183031 TACAAGATGGTACGCATGG 59 3183134 3183208 TATCAACATCTCACAACGCT 59 NA Drosophila melanogaster 50 CG1139 FBgn0035300 FBtr0072845 3 1 1 160 3L 1972188 1972272 GAATCCCACTACAAACTTTCAG 59 1972393 1972411 AAATGTGCAGGCAGTAGAG 59 NA Drosophila melanogaster 50 mu2 FBgn0002872 FBtr0072857,FBtr0072856 3 2 2 81 3L 1945491 1945509 TGTAAGTCCCAATGAGGAG 58 1945373 1945448 CTGACAGATCTTCTGATAGTG 57 NA Drosophila melanogaster 50 n-syb FBgn0013342 FBtr0072816,FBtr0072819,FBtr0072818 1 3 5 177 3L 1636901 1636920 GCATAGAGTACCTTCATCCT 58 1635683 1635953 CCTGTTCCTTGTTCTTGTC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13897 FBgn0035160 FBtr0072601 3 1 1 60 3L 738522 738540 GTGCACTCAAGATTGAAGC 59 738480 738498 ACTTGCTCGCTCTTAAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 miple FBgn0027111 FBtr0072505,FBtr0072504 1 2 2 148 3L 268950 269104 CAAAGATAAAGCTGCTCGC 59 269216 269234 ACAGTTAACGTCGTTACGA 58 NA InUTR Drosophila melanogaster 50 CG7047 FBgn0035103 FBtr0072535,FBtr0072534,FBtr0072536 3 3 3 136 3L 177250 177268 ATAAAGTGCAGAGTGTCCC 59 177066 177152 AAATACTCGATGGTCTCAGTG 59 NA Drosophila melanogaster 50 CG30430 FBgn0050430 FBtr0072448 1 1 1 64 2R 21017163 21017181 CTACTACCCTTGCTGTAGC 59 21017209 21017227 TATAGAATCCGCATCGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 betaTub60D FBgn0003888 FBtr0072270 2 1 1 99 2R 20193660 20198262 AGTTCTGGGAGATCATTTCC 59 20198324 20198342 TTGTAGTAGACACTGACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sox14 FBgn0005612 FBtr0072158,FBtr0072157 2 2 2 179 2R 19868267 19871083 GAACCAAGAAACATTCGCC 59 19871225 19871244 TTATGTACGGCTGCTTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Klp59D FBgn0034827 FBtr0071968 3 1 1 60 2R 19031576 19031595 GACATGAGCTTTAACCACAC 59 19031618 19031636 CTTGGATATCCACGTTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp58c FBgn0034769 FBtr0071920 2 1 1 62 2R 18593641 18593719 AGCGAAGAGAATACCTCCA 59 18593597 18593615 GAATTGCTTGGACATTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34040 FBgn0054040 FBtr0100095 1 1 1 60 2R 17720597 17720686 GTGCAACAATACAGAGGAC 58 17720555 17720573 TTGTACAGCCGTTAGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10320 FBgn0034645 FBtr0113102,FBtr0113101 2 2 3 214 2R 17545965 17545983 ATTGAAGGATCCATGGCTG 59 17546220 17546238 CCTTATCTCCGTGTTCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4302 FBgn0027073 FBtr0071625 1 1 1 143 2R 17101864 17101939 GCCAGAAATTAAGGAGATGAC 58 17101741 17101759 ATTACTGCCTGAATCTCCG 59 NA Drosophila melanogaster 50 Fem-1 FBgn0034542 FBtr0086245,FBtr0086246 2 2 2 83 2R 16551360 16551447 GCAATAATGTATCGGTAGATCG 58 16551298 16551317 TAAGATTGTGGTTCTCCACC 59 NA Drosophila melanogaster 50 Mctp FBgn0034389 FBtr0110970,FBtr0110971 3 2 2 109 2R 14660396 14660473 TATGTCCAGAGCTGTTTCG 59 14660544 14660564 AGAACTAGAGGTACTGTCTCC 59 NA Drosophila melanogaster 50 CG6429 FBgn0046999 FBtr0087044 3 1 1 75 2R 12760751 12760769 CAGGATCACTTGGGATCAG 59 12760808 12760895 AGAACTATCCGTCAATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8195 FBgn0034032 FBtr0087353 3 1 1 80 2R 11452073 11452091 CTGCTAGTCATCGGTATCC 59 11451955 11452029 ATTCTGCTCCATCATAGCA 58 NA Drosophila melanogaster 50 CG12159 FBgn0033232 FBtr0088889 2 1 2 147 2R 3803014 3803411 TTATAGGCTCCGACTTTCC 58 3802673 3802903 TTAAACCTGAACCAACTCG 57 NA Drosophila melanogaster 50 sPLA2 FBgn0033170 FBtr0088972,FBtr0100138 3 2 3 70 2R 3330817 3330835 ACGAGATTATCGAGTCCCA 59 3330869 3330954 CTTGAGGATGGGAAACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp42Ej FBgn0033132 FBtr0089030 3 1 1 231 2R 2928037 2929080 ATTCTCATTGTGACGTGCA 59 2929329 2929347 TGAAGGTGAAGAGGTAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG8335 FBgn0033069 FBtr0085990 1 1 1 86 2R 2088447 2088467 GAGCTAAGGTGTATCTAAAGC 57 2088515 2088589 CCATAACCTGATTGTCACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15216 FBgn0032978 FBtr0085940 3 1 1 113 2L 22161311 22161697 TATCGAAACTTCTCGGCAG 59 22161774 22161792 TGCTCCTTGGAATAATGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tio FBgn0028979 FBtr0089377 1 1 1 66 2L 22023095 22023113 ATGTTCGATCAGCTCAGTG 59 22023143 22023383 TGTTGTTAAAGCAATGCCC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG31619 FBgn0051619 FBtr0110959,FBtr0085901,FBtr0085902 3 3 3 119 2L 21712957 21713036 ACTTAACGAACGATCGGAG 59 21713118 21713137 CCATCATCTGTATCCTGTCC 59 NA Drosophila melanogaster 50 Aats-asn FBgn0086443 FBtr0081162 3 1 1 130 2L 19131671 19131800 TTGGGTGCAATCTTTACGT 59 19131559 19131577 ACGTAAATCGTGGGAAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31788 FBgn0051788 FBtr0081056 1 1 1 68 2L 18257756 18257834 TTGAGTCTTTCGATTGGAC 57 18257706 18257724 TTACTACACGCTGTTTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0110935,FBtr0080978,FBtr0080975,FBtr0110934,FBtr0080977,FBtr0080976 2 6 6 131 2L 17400944 17400962 GTCGTCCTGGTATCTTACG 59 17401056 17401129 GCTTGCACTCAAAGTATCTG 59 NA Drosophila melanogaster 50 CG7968 FBgn0028532 FBtr0080551 2 1 1 147 2L 13849608 13849689 AGAACTTTGGTTGCAATGG 58 13849800 13849818 TAGTTTGTGCTCTTCAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5458 FBgn0032478 FBtr0080437 1 1 1 60 2L 13183653 13183838 CCAATATAGGCCTCTACATAGG 59 13183858 13183877 CAACCTCTACCTTGTCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33305 FBgn0032351 FBtr0080221 3 1 1 61 2L 11159922 11159940 ATCGCGATGAATACAGTCC 59 11159729 11159898 CATGGCATTAAGCATTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Stam FBgn0027363 FBtr0080143 2 1 1 220 2L 10859430 10859448 ACAAGGTAACGACCAATCC 59 10859632 10859709 TTTCAGTGAAACCTTTGGC 58 NA DesignNoJunction Drosophila melanogaster 50 SamDC FBgn0019932 FBtr0079994 2 1 2 121 2L 10340804 10340879 CTACTGTGAAATCTGGTATCG 57 10341009 10341028 ATGAATTGTCATGTACTCCC 57 NA Drosophila melanogaster 50 CG31717 FBgn0051717 FBtr0079977 1 1 1 60 2L 10250969 10250988 ATCTGTCGTTCTTCAAATCC 57 10251011 10251029 CCATCGCATGATATCTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9541 FBgn0032083 FBtr0079785 1 1 1 80 2L 8971317 8971335 CTTGGAACTCTTTCGTGAG 58 8971186 8971273 TCTCCATCAACAATCTGCA 58 NA Drosophila melanogaster 50 CG3430 FBgn0031875 FBtr0079350 3 1 1 286 2L 6958282 6958360 CCCAAAGAAGGATTATGAGAC 58 6958672 6958692 CCTTAGAATCGGCATTAATGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG18304 FBgn0031869 FBtr0079367 1 1 1 80 2L 6934897 6934998 CAAGGAACAATTACAGAGCAC 59 6934837 6934855 TTCACCTGTTGCTCATAGC 59 NA Drosophila melanogaster 50 ifc FBgn0001941 FBtr0079179 2 1 1 146 2L 5986883 5987624 AACATCACCGTTACCAAGG 59 5987732 5987752 GGTTAATAATCAGTGGACGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33124 FBgn0053124 FBtr0113449 1 1 1 80 2L 2208657 2208678 AAGATGAACGAGTATCTGATGG 59 2208538 2208618 CGAAATGAAACTCGCTATCAG 59 NA Drosophila melanogaster 50 CG7420 FBgn0031344 FBtr0077933 1 1 1 105 2L 1501996 1502014 GAACAATCGTGGTCAACTG 59 1501849 1501867 GCTAATGGTTTCCACAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 Plc21C FBgn0004611 FBtr0078047,FBtr0078048,FBtr0078051,FBtr0078050,FBtr0078049 3 5 5 103 2L 344853 344871 GTCACTGGAGAGGTTATGC 59 344937 345017 CGTTTCATTCTGATCAGCTC 59 NA Drosophila melanogaster 50 tRNA:CR31575 FBgn0051575 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:28S-A2113 FBgn0086039 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG7192 FBgn0030894 FBtr0074527,FBtr0074528 1 2 2 83 X 17992531 17992619 TGAATGATATACCTACACTGCC 59 17992469 17992487 ACAAGATCTGACGTTCCAG 59 NA Drosophila melanogaster 50 mnb FBgn0002777 FBtr0074542,FBtr0074541,FBtr0100616 2 3 3 81 X 17764201 17764295 CTACATCGTTAAGCTCAAGC 58 17764139 17764158 GTACAGGTTGTATGAGAGCA 59 NA Drosophila melanogaster 50 yin FBgn0015565 FBtr0070632,FBtr0070633,FBtr0070631 3 3 3 174 X 3759040 3759114 GATGCCAACTAAAGCTGTG 59 3758884 3758903 CAAAGATCCTGCGTTAATGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3071 FBgn0023527 FBtr0070398 1 1 1 60 X 2158050 2158068 CAAGAGGTTGATCACACCA 59 2158090 2158110 CATCGTAGGATTTCAATCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33521 FBgn0053521 FBtr0091473,FBtr0091471,FBtr0091472,FBtr0091470 1 4 4 80 4 1210308 1210519 CGAATCTGGAATAAGCAAAGC 59 1210560 1210579 ACATGATTGCTTAAACCCGA 59 NA Drosophila melanogaster 50 ey FBgn0005558 FBtr0100396,FBtr0100395,FBtr0089235 1 3 4 179 4 728297 731562 TGTCACAGTGGAGTAAATCAG 59 731701 733131 TGTTTCATAATACCTCCCGAG 59 NA Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0089130,FBtr0089131 1 2 5 112 4 363633 363651 GTATGAATCTGGGTGAGGA 58 350957 363558 GCCTATTACTTGTGTTTGCA 58 NA Drosophila melanogaster 50 CG1746 FBgn0039830 FBtr0085773,FBtr0085774,FBtr0085772 2 3 3 207 3R 27043629 27043647 AGTACTTGCGACCATTGAG 59 27042878 27042897 AATACTGTTCCGATACCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7829 FBgn0039703 FBtr0085531,FBtr0085532 1 2 2 60 3R 25643310 25643328 CATAGTGTCCATCCAACTG 57 25643268 25643289 GTGGTTATTTATTATGGAGCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 1 7 8 81 3R 24639657 24639675 TACTGCTACGGATATTGGC 58 24639719 24640879 GCTCAAACACCTTATAGCAG 58 NA Drosophila melanogaster 50 CG10170 FBgn0039085 FBtr0084420 1 1 1 60 3R 19360327 19360345 TTTCCTACCACTTCAGCTC 58 19360285 19360303 TTAACTAGAGCCTTTGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0112915 2 11 12 120 3R 17033377 17036518 CTATCAGATCTGGAAGAGGAC 58 17036600 17036618 TTACAAGAAGCTGGGTGTC 59 NA Drosophila melanogaster 50 Stat92E FBgn0016917 FBtr0089486,FBtr0089485,FBtr0089487 2 3 5 80 3R 16367272 16367417 TCGAAGACAGGATAATGTCC 58 16367211 16367229 CTTCGTTGAACTTTAGGGC 58 NA Drosophila melanogaster 50 CG3995 FBgn0038472 FBtr0083428 2 1 1 62 3R 12868654 12868672 TAAGCAAGCACATGAACAG 58 12868610 12868628 ATTTGTACTTGGAGTTCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4699 FBgn0038364 FBtr0083175,FBtr0083176,FBtr0083177 2 3 3 109 3R 11622600 11623024 CTCTCGCTACCAATCACTC 59 11623096 11623115 TTCATCTCCAAATCGGTCAG 59 NA Drosophila melanogaster 50 CG9611 FBgn0028487 FBtr0082846,FBtr0112939,FBtr0082847 3 3 5 158 3R 9522676 9522695 AAAGACTCTGCACGATAGAG 59 9522057 9522557 CGTAGTTTGTATCTATCCGGA 58 NA Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 3 8 8 284 3R 9504401 9504476 ACACGACGTAAATCAGGAG 59 9504723 9504742 TTTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG10512 FBgn0037057 FBtr0078297,FBtr0078300,FBtr0078298 2 3 4 297 3L 21199477 21199495 GATGCCATTAGGAGGATCC 59 21200565 21200583 CTTCTTCTCCTTGTCTCCA 58 NA DesignNoJunction Drosophila melanogaster 50 chb FBgn0021760 FBtr0089462,FBtr0089460,FBtr0089461 2 3 3 60 3L 21172357 21172375 GGAGGAACTACGATCACAG 59 21172398 21172417 CTTAGACATGTAGGCGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 skd FBgn0003415 FBtr0078328,FBtr0112830,FBtr0078329 2 3 3 80 3L 20989472 20989492 TTCTAACATTCGAGGAAGAGG 59 20989353 20989430 TGTCCATATGAGTGTCCCA 59 NA Drosophila melanogaster 50 Eip71CD FBgn0000565 FBtr0075553,FBtr0075552,FBtr0075555,FBtr0075554 2 4 4 69 3L 15505788 15505806 TCATAACCACTGAGATTGC 57 15505898 15505916 AACCTATACTTCTGGTGGT 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG3967 FBgn0035989 FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480 3 5 5 121 3L 9410906 9411455 CATCACAAACAGTCCTAACAC 59 9410805 9410823 TCTGTGTTATCTGCTGCAG 59 NA Drosophila melanogaster 50 CG3967 FBgn0035989 FBtr0076482,FBtr0076484,FBtr0076483,FBtr0076481,FBtr0076480 1 5 5 116 3L 9411532 9411550 AACAATTTCGTGCTCTACG 58 9410905 9411452 TGTGTTAGGACTGTTTGTG 57 NA Drosophila melanogaster 50 lqf FBgn0028582 FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794 1 6 6 80 3L 7527254 7527341 GCAGGATTTCAAGGATCCA 59 7527383 7527403 AGCAGATCTAGCAAATGACTC 59 NA Drosophila melanogaster 50 CG11537 FBgn0035400 FBtr0073115,FBtr0073116,FBtr0113132,FBtr0113133,FBtr0073117 1 5 5 80 3L 3130292 3130310 GGTCTCGGTCTTTATAGCC 59 3130170 3130248 CCAAACACTTGCATGAAGG 59 NA Drosophila melanogaster 50 Tkr FBgn0003715 FBtr0072458,FBtr0100126,FBtr0072457,FBtr0072456 2 4 4 179 2R 20981955 20981973 GGTAAGGAGTTTGGAAAGG 57 20979236 20981812 GAGACCAAACATATGTGGC 58 NA Drosophila melanogaster 50 nvy FBgn0005636 FBtr0072267 2 1 1 192 2R 20177064 20177082 GTTCTTCATGGAGATGAGC 57 20177296 20177314 CCAATCCCTGTACTGACAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG4266 FBgn0034598 FBtr0113100 2 1 2 152 2R 17054802 17054820 GAATATGTCAAGAGCTCGC 58 17054539 17054687 CTTCTTCTCGTCTAACAGGT 58 NA Drosophila melanogaster 50 CG5721 FBgn0034315 FBtr0086771 1 1 1 60 2R 14070540 14070561 GAGATCATGAGTTCGAATTTGG 59 14070501 14070519 GTAGCAACTTTAAGGCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k07433 FBgn0022085 FBtr0086950 2 1 3 82 2R 13408430 13410372 TAATGAATCTGTGCGGTCC 59 13408366 13408384 GTATTCAACGGCATTCAGG 58 NA Drosophila melanogaster 50 CG30081 FBgn0050081 FBtr0087365 2 1 1 60 2R 11095982 11096003 TTTATTCCTACACTCCGTATCC 59 11096023 11096042 GGTTCCGTATGAATATCGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 3 12 12 93 2R 6499952 6500255 GCATATGGACATGTATAACTCG 58 6500309 6500327 ATTCGTATAGTGCGGTTCC 59 NA Drosophila melanogaster 50 CG2269 FBgn0033484 FBtr0088407,FBtr0088408,FBtr0088409 1 3 3 114 2R 5982474 5982563 CTATCTATGTGGTGCCTCAC 59 5982640 5982658 GATCATCAGGATGGAACGG 59 NA Drosophila melanogaster 50 CG30492 FBgn0050492 FBtr0088913,FBtr0088914 2 2 6 144 2R 3517705 3517723 CTACATCTGCCTCATGGAG 59 3517831 3521736 CTTATTGGCTAGTTTGCCC 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111068 1 1 60 96 2R 3244971 3244989 ATGAGATTAACTACGCCCG 59 3236469 3244911 AACTTGTACCATCGGAAGG 59 NA Drosophila melanogaster 50 CG17266 FBgn0033089 FBtr0086144 2 1 1 91 2R 2563161 2563180 CAAATACAGTCCCAACTGAG 58 2563023 2563041 TCGAATATCATTCGTCCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)37Bb FBgn0002021 FBtr0081177 2 1 1 61 2L 19050059 19050079 CGTACTACAACAATCTGTACC 58 19050018 19050036 CAGAGATTGCTGTACTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kuz FBgn0015954 FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660 2 5 5 86 2L 13634171 13634249 CACCTACAGAGATTTCACTG 57 13634298 13634316 TACTTCTCGCAAATTCCAC 57 NA Drosophila melanogaster 50 Pten FBgn0026379 FBtr0089905,FBtr0089902,FBtr0089901,FBtr0089903,FBtr0089900,FBtr0089904 1 6 6 83 2L 10259082 10259101 GTTGATATGTGGCTCAAGGA 59 10258905 10259036 GATCATGGTACCGGTTCTG 59 NA Drosophila melanogaster 50 Aats-ala FBgn0027094 FBtr0079721 2 1 2 256 2L 8380660 8380682 GATCTAACTACGATACCGATCTG 59 8380303 8380321 ATTCAACTTCTCAGTGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 Liprin-alpha FBgn0046704 FBtr0079301,FBtr0079300 1 2 2 80 2L 6726526 6726602 CAGAAAGAGGATCAGGAGG 58 6726646 6726664 ATGCAACGATGTAGACTCC 59 NA Drosophila melanogaster 50 Ugt37b1 FBgn0026755 FBtr0079242 1 1 1 60 2L 6226478 6226496 GATCGTCCTCTAAGTCCTC 58 6226519 6226538 GGTATCGAATCACATACTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ade2 FBgn0000052 FBtr0079220,FBtr0079221,FBtr0079219 2 3 3 126 2L 6042148 6042166 GGAGGGTGTCAATAGTGAG 59 6041977 6041995 AATTAGTCCGCGGTATTGG 59 NA DesignNoJunction Drosophila melanogaster 50 chic FBgn0000308 FBtr0079233,FBtr0079235,FBtr0079236,FBtr0079234 2 4 4 112 2L 5976614 5976632 CACTGCATGAAGACAACAC 59 5973584 5973605 CCGCAAGTAATCAGATAATCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Jon25Bi FBgn0020906 FBtr0079054,FBtr0100432 1 2 2 60 2L 4954701 4954719 GCACATGGTTAACAAGGTG 59 4954659 4954678 GTTGTCGTACATGTTGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3714 FBgn0031589 FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077482,FBtr0077479 1 5 6 114 2L 4190819 4192645 AGAAGTCATTCAGGAGTGG 58 4190723 4190741 GAAAGATAGGCCAGATCCC 59 NA Drosophila melanogaster 50 CG2964 FBgn0031462 FBtr0077722 2 1 1 70 2L 2814017 2814035 ATTGTGATAGTGAGTGCCT 58 2814069 2814087 AAGAAAGCGTAGACCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rho-4 FBgn0030318 FBtr0073518,FBtr0073517,FBtr0073519 2 3 3 82 X 11498696 11498777 ATACATTTCCAGGACGATCC 59 11498822 11498840 TTGTAGATGAACAGGGTGG 58 NA Drosophila melanogaster 50 antdh FBgn0026268 FBtr0073468 3 1 1 85 X 11062400 11062498 ATCAAGATTACGAGCGTCAG 59 11062334 11062352 AGCATTCGATCCTTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11160 FBgn0030257 FBtr0073390,FBtr0073391 3 2 2 133 X 10943050 10943070 AACTGAAGGATACTTACTGCC 59 10943165 10943238 CGTACATGATGAGTCCTCG 59 NA Drosophila melanogaster 50 CG34417 FBgn0085446 FBtr0112705,FBtr0112704 2 2 5 84 X 6481127 6482107 AGGAATATGAGAACGTCCA 57 6482155 6482173 AAGAAATGGTGTATCAGCG 57 NA Drosophila melanogaster 50 Eph FBgn0025936 FBtr0089085,FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086 2 5 5 80 4 640348 640367 GAGTAGTTCTATGGGAGGTC 58 640407 640492 CTATACTCTTTATCACGTCCTG 57 NA Drosophila melanogaster 50 CG5316 FBgn0038704 FBtr0083759,FBtr0083760,FBtr0083758 2 3 3 176 3R 15229536 15229625 ATCTTTCACTTGAACCGGAG 59 15229764 15229782 GCTTGTTGATACGAAGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yrt FBgn0004049 FBtr0082793,FBtr0114376,FBtr0114374,FBtr0114375 1 4 4 94 3R 9257648 9257666 CTCAAGTCCAACTTCAGCA 59 9257511 9257593 TAGTCTGGATCCAATTTCACAG 59 NA Drosophila melanogaster 50 CG8359 FBgn0037634 FBtr0081919 1 1 1 203 3R 4632099 4632117 TAAAGTTCTTCGATCGGCA 59 4632284 4632355 ACTATTTCCTGCTTCTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1427 FBgn0037347 FBtr0078702,FBtr0078703 3 2 2 83 3R 1427574 1427643 TATAGCCTGCAAACTCGTG 59 1427689 1427708 GGTTGTGCCTCTAGTAAGTC 59 NA Drosophila melanogaster 50 CG9795 FBgn0037234 FBtr0078907,FBtr0100617,FBtr0078906,FBtr0078905 2 4 4 85 3R 150514 150598 GAGATATAGACGATCTAAAGACCC 59 150642 150660 GGATTCCAGATGTGAGAGG 59 NA Drosophila melanogaster 50 Nedd4 FBgn0036736 FBtr0075176,FBtr0075177,FBtr0075179,FBtr0075178 3 4 4 82 3L 17537426 17537445 TTAGTTCGGTAACGAAGACC 59 17537489 17537571 GCCTCCATAATCTAAGCCAG 59 NA Drosophila melanogaster 50 pHCl FBgn0036542 FBtr0100034,FBtr0100037,FBtr0100035,FBtr0100036 3 4 4 112 3L 15860366 15860384 CCATTACGTACGCAATGAG 58 15857829 15858865 CTCGTAGGAAATGCTCTCC 59 NA Drosophila melanogaster 50 CG10089 FBgn0036369 FBtr0075820 3 1 4 109 3L 13460115 13460133 TATATCCTCGTCGAGAGGC 59 13459969 13459987 TCTTTACCAGACTGGTGGA 59 NA DesignNoJunction Drosophila melanogaster 50 ATPsyn-b FBgn0019644 FBtr0076405 1 1 2 116 3L 9723626 9723644 GATCTACGTCATGGAGCAC 59 9723724 9723834 TTATCGATCTCGCCATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 dikar FBgn0052393 FBtr0076954,FBtr0076953 2 2 2 162 3L 6734874 6735016 AGACATTCAATCATGGTGG 57 6734668 6734686 AATTAACTCGGGCACTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Bap170 FBgn0042085 FBtr0086107 2 1 1 127 2R 2525514 2525702 GAGCAACATTCACATCCAG 58 2525793 2525811 TAGAGTCAATACCCTCGCA 59 NA DesignNoJunction Drosophila melanogaster 50 mir-13aS FBgn0082180 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG41293 FBgn0085602 FBtr0114046 1 1 1 60 XHet 60636 60657 GATAATCTTGCAGGTGAATTGG 59 60678 60991 GTTGCAGTTGCTTCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR32785 FBgn0052785 FBtr0070603 1 1 1 60 X 3713739 3713758 TGGTGTAATGGTTAGCACTC 59 3713781 3713799 TCCACCGAGATTTGAACTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32819 FBgn0052819 FBtr0070051,FBtr0070050 2 2 2 60 X 21490248 21490266 AACAACTTGAGGAACTCCC 59 21490206 21490224 CCTGCTTCGAGATCTTCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14476 FBgn0027588 FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058 3 5 5 96 X 21473853 21474022 AATCTATGGTCATGGAGCG 59 21473775 21473793 TACAACATTGGTCTCCGAC 59 NA Drosophila melanogaster 50 inx6 FBgn0027107 FBtr0077339 2 1 1 60 X 20139923 20139941 ATGCTCACCAGGTATTTCC 59 20139881 20139900 ACTTGATCGAATAGCACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 jog FBgn0031079 FBtr0074805,FBtr0074804 2 2 2 60 X 19729207 19729225 AACGTGTACACTGGATTGG 59 19729165 19729183 CAAAGGTGTAGTCAGTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18809 FBgn0042132 FBtr0074810 1 1 2 89 X 19637537 19637555 TGATAACGTAACGTAGCCG 59 19636928 19637485 GCAAATCGAAATTGTTTGCG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 vav FBgn0040068 FBtr0113316 2 1 3 95 X 19159261 19159279 CTACATCTACAGCGAGGAC 58 19159338 19163304 ATATTGTCGGTGGTAACCT 57 NA Drosophila melanogaster 50 Frq2 FBgn0083228 FBtr0074547,FBtr0074546,FBtr0074548 1 3 3 87 X 18095255 18095333 CCAGATGGTAGGACAACAG 59 18095383 18095402 GTTCTTGTCCATCTGATCGA 59 NA Drosophila melanogaster 50 Andorra FBgn0030898 FBtr0074591 1 1 1 60 X 18072906 18072924 CTGCTAATCGGCTATTTCC 58 18072864 18072885 TATATTCCACATAGAGCGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wupA FBgn0004028 FBtr0074522,FBtr0074524,FBtr0074525 1 3 7 80 X 18003547 18003568 CGTATGTATATTTGTGAAGGCC 59 18000950 18003507 ATTGAGATCGTTGATCTCCC 59 NA Drosophila melanogaster 50 CG7192 FBgn0030894 FBtr0074527,FBtr0074528 2 2 2 84 X 17992531 17992619 TGAATGATATACCTACACTGCC 59 17992468 17992486 CACAAGATCTGACGTTCCA 59 NA Drosophila melanogaster 50 CG8661 FBgn0030837 FBtr0074444 3 1 1 61 X 17178270 17178289 CAAATCCCTAAAGATCGCTC 58 17178228 17178246 CCACCCACTTGATTATGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16700 FBgn0030816 FBtr0074383 2 1 1 81 X 16991185 16991273 AATCTGGGTGATACCATACTG 58 16991316 16991334 AGAACTGCAGAGGATAACC 58 NA Drosophila melanogaster 50 CG34326 FBgn0085355 FBtr0112528 3 1 1 64 X 16926402 16926420 ACCCATGTACCATCTACCA 59 16926356 16926374 CTCTGTTTGTTCGGATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wus FBgn0030805 FBtr0074418 1 1 1 60 X 16833836 16833854 GGTCATTGCCTATCTATGC 57 16833794 16833812 CAAGTACAGATGATGCAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13004 FBgn0030797 FBtr0112996,FBtr0074351 2 2 2 80 X 16721855 16721873 GACAATAGCGTGGAGTCTC 59 16721793 16721811 ATAACCGCAGATGATCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32572 FBgn0052572 FBtr0074324 3 1 1 150 X 16620590 16620667 TATATGCCAAAGTGGCTAGC 59 16620778 16620798 GCAGTAGAGATAAGAATCGCA 59 NA InUTR Drosophila melanogaster 50 Axs FBgn0000152 FBtr0074372,FBtr0100417 1 2 2 80 X 16576145 16576242 CACGATATCCTGTATCTCGA 58 16576084 16576102 AAAGTAGTTCCGGATGTCC 58 NA Drosophila melanogaster 50 Pros28.1 FBgn0004066 FBtr0074210 3 1 1 161 X 16170852 16170936 ATAACCAGATTCATTGCCCA 59 16171060 16171078 GGCGTTAGCCTTATACTCG 59 NA Drosophila melanogaster 50 Pis FBgn0030670 FBtr0074058 2 1 2 235 X 15596689 15597228 CCTTTAACCAAAGCACTCG 59 15596379 15596398 CTTCTGGTAATACAATCGCA 57 NA DesignRelaxed Drosophila melanogaster 50 CG14414 FBgn0030571 FBtr0073931,FBtr0073930,FBtr0073932 2 3 3 219 X 14475705 14475797 TATGATGAAACGCAGAAGC 58 14475980 14475998 CGCGATCCTTGTTAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11816 FBgn0030495 FBtr0073785 2 1 1 60 X 13447656 13447677 GACACCTATTGAGCAAATATGG 59 13447617 13447635 CATTTGCGGAAATACAACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rbp1-like FBgn0030479 FBtr0073790 2 1 1 67 X 13278690 13278708 GTGAATGGGATTTAGCCTG 58 13278641 13278659 GATCTCGTATTTGGAGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cac FBgn0005563 FBtr0100303,FBtr0100302 1 2 10 157 X 11856301 11856319 TTCACCGGAATGTTTAGTG 57 11848301 11856054 TTGATTGAGTTCGAATCCC 57 NA Drosophila melanogaster 50 CG11106 FBgn0030280 FBtr0073446 2 1 1 72 X 11096550 11096569 AATTACTTTCAACGGATGGG 58 11096604 11096622 ATTGAGGACAGTAGTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Neb-cGP FBgn0083167 FBtr0071449 2 1 1 201 X 10354992 10355010 AAATCTTCAATGGCACCAC 58 10355260 10355278 AATAAACTGATCCGCAGTC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Ipod FBgn0030187 FBtr0071484 3 1 1 86 X 10126135 10126154 CTTACAATGTGATAGCCACG 58 10126068 10126086 ATGAATATCCGTGACCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12121 FBgn0030109 FBtr0071334 2 1 1 80 X 9125701 9125721 GAGGAATCACCTAAATCCCAG 59 9125579 9125662 CTTAACACGAACTTTAAGCTCC 59 NA Drosophila melanogaster 50 CG10648 FBgn0030067 FBtr0071255 1 1 1 127 X 8796835 8797246 TGATATTGAGGAGACCAAAGTG 59 8797334 8797352 CATACTCGTACTCCAGCTG 59 NA Drosophila melanogaster 50 CG12123 FBgn0030039 FBtr0071245 1 1 1 60 X 8335993 8336012 TTACTATCTTCGCGAGTTCC 59 8335952 8335970 ATGATTGTGCATAAGGCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2147 FBgn0030025 FBtr0071166 2 1 1 68 X 8135142 8135160 GCACAAGATTCAATCTCGC 59 8135192 8135210 ATCCGGATATGGAATCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10959 FBgn0030010 FBtr0071157 2 1 1 60 X 8043028 8043047 CGAATAGATTCCAACTGGTC 58 8043069 8043088 AAGTCCTCGAATCCAAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1409 FBgn0029964 FBtr0071086 3 1 1 82 X 7752455 7752473 ATTCTCGATGTGAGTGACC 59 7752519 7752537 GTGGATTTGTCGTTCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1958 FBgn0029940 FBtr0071046 3 1 1 60 X 7161355 7161376 GGATAATAGGGAAATCAAGGGA 59 7161395 7161415 TAGGGAACTAATTGATGTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12541 FBgn0029930 FBtr0071031,FBtr0110994 2 2 2 170 X 6927338 6927423 CGAGTCTTTCAGAAGAATGG 58 6927187 6927205 CTGTTGTGAATCCATCGTC 58 NA Drosophila melanogaster 50 ogre FBgn0004646 FBtr0071037,FBtr0071036 1 2 2 79 X 6870091 6870109 GCCAAGAAGTACTACACCT 58 6869314 6869332 AATTTGGGCGTATAACAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG3184 FBgn0029892 FBtr0070989 2 1 1 61 X 6582487 6582505 GGAGCAGTGAGTGTAATCC 59 6582444 6582462 GTACAATTCCATCTGGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3566 FBgn0029854 FBtr0089869 3 1 2 193 X 6170573 6170591 TACGATGTGACCAAGTTCC 59 6170252 6170270 GATTCTCACCTAATTGGGC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12236 FBgn0029822 FBtr0070825,FBtr0070826 1 2 2 77 X 5803548 5803566 GGATGAGCAGACCATAGTG 59 5803682 5803700 ATGTAATCGGGTATGTCCA 57 NA DesignNoJunction Drosophila melanogaster 50 CG3249 FBgn0029764 FBtr0070795,FBtr0070796,FBtr0070794 3 3 3 108 X 5309436 5309454 CAACAAACTTACCAAAGGC 57 5309066 5309367 GATTACATTATTGGGACCTAGG 57 NA Drosophila melanogaster 50 CG4041 FBgn0029736 FBtr0070730 1 1 1 101 X 4810516 4810587 AACAATGAAGAGTTGGCCT 59 4810433 4810451 CAGGTACTCCTTGATCACC 59 NA Drosophila melanogaster 50 mRpL30 FBgn0029718 FBtr0070682 3 1 1 68 X 4542349 4542367 TGTCGTCAAGAACATACCG 59 4542397 4542417 GGCGTAACCTTAATTAGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12184 FBgn0025387 FBtr0070696 3 1 1 117 X 4522152 4522170 CAGATGATTCGCAATGCTC 59 4521996 4522071 TAACTCGAGTATTGGCTGC 59 NA Nonspecific Drosophila melanogaster 50 CG4857 FBgn0026083 FBtr0070643 1 1 1 107 X 4014360 4014378 TTAATGATCTGGACGACGC 59 4014449 4014544 TGAGCATTTGCAGAAATCG 59 NA Drosophila melanogaster 50 CG32778 FBgn0052778 FBtr0070622 1 1 1 106 X 3978728 3978832 GATCCCAGTGGTTACTCAC 59 3978901 3978920 TTACTGCATTGATAAGCAGC 58 NA Drosophila melanogaster 50 CG32790 FBgn0052790 FBtr0070621 1 1 1 60 X 3972744 3972763 TATAGTGCCTATAATGCGGC 59 3972786 3972804 AGCCATAGTAAGCCAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13021 FBgn0029669 FBtr0070570 1 1 3 87 X 3408477 3409288 TACTGTGGAAACTTGGTGTC 59 3409338 3409356 CAACTTTAGGCAGAAGTGC 59 NA InUTR Drosophila melanogaster 50 CG14270 FBgn0029665 FBtr0070590 1 1 1 60 X 3378927 3378945 AAACTGCGTCTCCTTTCTC 59 3378885 3378903 CCTCGTCGTATAGATCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fs(1)Yb FBgn0000928 FBtr0070484 3 1 1 120 X 2617524 2617611 ATCTTCAAGGATTCACCCAG 59 2617694 2617712 GACGAAAGAAATCCTTGCG 59 NA Drosophila melanogaster 50 per FBgn0003068 FBtr0070477 2 1 1 81 X 2585970 2586053 ACAACAAGAAATACACGGAC 58 2586097 2586115 ATGAAGGACGAGTAGAAGG 58 NA Drosophila melanogaster 50 Mct1 FBgn0023549 FBtr0070393 3 1 1 109 X 2092967 2093861 CACATAGTTACCGATGGCA 59 2093934 2093952 ACCATTATGGAGGCAATCC 59 NA Drosophila melanogaster 50 Hr4 FBgn0023546 FBtr0100515 3 1 1 170 X 1896185 1896279 AAACAAAGAAGTGGAACTGG 58 1896517 1896536 TAGAACATCTTGCTCTCGAG 58 NA Drosophila melanogaster 50 CG11412 FBgn0024362 FBtr0070208,FBtr0070209 2 2 3 228 X 1237463 1237481 GGATATGCACATGAACGTG 58 1237916 1237934 AAGATAGTAGCGGAACAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3638 FBgn0026875 FBtr0070249 1 1 4 195 X 1120308 1127846 TTTACCTCGAGAGTCTGGT 59 1119555 1120149 TACAAGCCTAATCCGATGG 58 NA Drosophila melanogaster 50 CG11382 FBgn0040367 FBtr0070205 3 1 1 60 X 1104624 1104642 CAGTCATGGAATCAGTCAC 57 1104665 1104684 GTACTTAAAGGCCAATCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11663 FBgn0029539 FBtr0070164 3 1 1 202 X 788773 788792 GATGCAAACCCAGATAACAC 59 788957 788975 TGTTACTGGTCGTTGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Suv4-20 FBgn0025639 FBtr0070151 3 1 1 106 X 547480 547498 TACGATATAGCCATCCAGC 58 547261 547411 TATCGGACGATATGATCGTG 58 NA Drosophila melanogaster 50 ac FBgn0000022 FBtr0070072 2 1 1 61 X 264646 264666 GAAGACTACCGTAACAATTCC 58 264688 264707 ATATAGTCGAGGATGTCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40625 FBgn0085503 FBtr0113915 2 1 1 72 U 5511350 5511368 AATTCGAGAAGACTGGGAC 58 5511403 5511486 CCTGTAGGTCCATTCTTGTC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG40119 FBgn0058119 FBtr0113799 2 1 1 68 U 4806732 4806753 GTATGACATTCCATACTCAGAC 58 4806782 4806800 CGGTCATCAAATAATCCGT 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41560 FBgn0085691 FBtr0114140 1 1 1 60 U 4060520 4060865 AGAAGAACGAATGGATCGG 59 4060478 4060499 CTTATTTCGTAGGTCATCAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12423 FBgn0040038 FBtr0113685,FBtr0113686 2 2 2 96 U 1911189 1911209 TAAATGGATCGACCGTAATCC 59 1911267 1937080 CATGAAGCACTTTGGAGTC 58 NA Drosophila melanogaster 50 CaMKII FBgn0004624 FBtr0100148 2 1 6 109 4 1059078 1064106 AAAGAGCCTGAAGTTAACCT 58 1058988 1059006 TATCCATCAAAGTCGCCAC 59 NA Drosophila melanogaster 50 CG32021 FBgn0052021 FBtr0089244 1 1 1 141 4 928348 928366 TAACTTCTGATGATGTCGC 57 928156 928174 TTTAAGGCCCTACGATCTG 58 NA DesignNoJunction Drosophila melanogaster 50 Pur-alpha FBgn0022361 FBtr0089994,FBtr0089996 3 2 4 146 4 585281 586046 GATGGAGGGTTTAAAGGAG 57 586240 586259 AATAGTTATCGAAGTCCGGA 57 NA Drosophila melanogaster 50 CR33294 FBgn0053294 FBtr0113460 1 1 1 95 3R 21527 21602 AACAGTAATCAAACAGCTGG 58 21660 21678 TATCTGACAGTAATGCGCA 58 NA Drosophila melanogaster 50 CG11563 FBgn0039868 FBtr0085831 3 1 1 100 3R 27563231 27563249 AAGAAACCAGTCGTAGAGG 58 27563312 27563389 TTGGGTAATCTGAACTCTGG 59 NA Drosophila melanogaster 50 CG1544 FBgn0039827 FBtr0085755,FBtr0113311,FBtr0085756 2 3 3 87 3R 27027534 27027614 GAAGACTTTAACATCCATCCC 58 27027663 27027681 ACCAATCGATCTTGACTCC 59 NA Drosophila melanogaster 50 CG1340 FBgn0039797 FBtr0085699 2 1 1 62 3R 26552573 26552591 ACAATCCCTACTACCAGAG 57 26552617 26552635 TAAACTGATGGGATCCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2217 FBgn0027544 FBtr0085630 2 1 1 217 3R 26244956 26244977 CGCCGGATTATATTACTATCAC 58 26244690 26244709 CAACAAATACGCTAAGATGC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Obp99b FBgn0039685 FBtr0085462 3 1 1 92 3R 25542476 25542494 GTTCTCCTATTGGGTCTGG 59 25542402 25542420 ATAGTTGGTCAGATCCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31427 FBgn0051427 FBtr0113407,FBtr0113406 3 2 2 112 3R 25065062 25065137 GGCAAAGATGATTTCCTTCC 59 25064969 25064987 TTGCGAATACCTTCCTTGG 59 NA DesignRelaxed Drosophila melanogaster 50 larp FBgn0040108 FBtr0089682,FBtr0089680,FBtr0089681 2 3 3 119 3R 24146994 24147108 CGATTATGAAACAGGTCAACTG 59 24146896 24146915 TTGAAGCTCTTCAGGTACTC 59 NA Drosophila melanogaster 50 spz FBgn0003495 FBtr0085137 3 1 12 102 3R 22892600 22892856 TGTCCTCTTTAATACGTCCG 59 22892517 22892537 CGGAGATTGATTCTGATTCTG 58 NA Drosophila melanogaster 50 Ald FBgn0000064 FBtr0114544,FBtr0085000 1 2 6 91 3R 22082687 22082705 AAGAAGGAGAACATTGCTG 57 22082305 22082325 GATCCAGCTGTATAGTTACCA 58 NA DesignNoJunction Drosophila melanogaster 50 Lnk FBgn0028717 FBtr0084937,FBtr0084935,FBtr0084936 1 3 3 108 3R 21717660 21717678 TGGCTACGATAATGGTCAG 58 21717750 21718182 CACTTCGTTGCAATGTCTC 59 NA Drosophila melanogaster 50 CG5886 FBgn0039379 FBtr0084907 2 1 1 176 3R 21677877 21677895 AGTCCGTAAAGAACGAGAG 58 21678035 21678160 GCAGCTTTAACTTCTTGGT 58 NA Drosophila melanogaster 50 CG5071 FBgn0039347 FBtr0084884,FBtr0084885 2 2 2 61 3R 21444565 21444583 AAGACATCAACGTGGAGAG 59 21444608 21444626 CATGGCATGGATGAAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fur1 FBgn0004509 FBtr0089987,FBtr0089984,FBtr0089985,FBtr0089982,FBtr0089986 3 5 6 197 3R 21182169 21182187 GAGACGAGGAGACATTCAG 59 21180028 21181955 GTGATTTGTGCCATATAGCG 59 NA Drosophila melanogaster 50 rha FBgn0027376 FBtr0084832 3 1 1 112 3R 21170194 21170276 TTAGAGTCGAACCCATTGAC 59 21170348 21170369 ATTGAGGGTATATCTTGGAGAC 58 NA Drosophila melanogaster 50 Aats-gln FBgn0027090 FBtr0084866 1 1 1 60 3R 21089955 21089974 AACGCTTTGGGTATCTACTG 59 21089914 21089932 CGTAGTTCATGTTCAGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13653 FBgn0039288 FBtr0084804 1 1 1 60 3R 21021801 21021819 CATTCTATCTGAAGCACGG 57 21021843 21021861 TCAAGATCGGGATAATCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17462 FBgn0039251 FBtr0084718 2 1 1 60 3R 20751887 20751907 CTAATGGTGATCAGCTTTCTG 58 20751929 20751947 TGTGTTCACTTAAACGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13624 FBgn0039209 FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795 2 6 6 125 3R 20386538 20386624 TAAGGTGTACAAGCACAGTG 59 20386432 20386450 GTCATGTCATTGATGGTGC 59 NA Drosophila melanogaster 50 CG17781 FBgn0039196 FBtr0113279,FBtr0084623 1 2 2 240 3R 20199970 20199988 AAATGCAAATGGACAGCAG 59 20199683 20199701 TATGTGATGTTTGGGTGGT 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG13614 FBgn0039194 FBtr0084614,FBtr0084615 2 2 2 107 3R 20196249 20196328 GTGTTTACACTACCAACCG 58 20196399 20196417 GTTTAGCTTACACGAGTCG 58 NA Drosophila melanogaster 50 CG6364 FBgn0039179 FBtr0084602 3 1 1 84 3R 20116539 20116559 CAAGATACGAGAACTGTTCCA 59 20116605 20116680 GATATCACGTGGCACTCTC 59 NA Drosophila melanogaster 50 Atg6 FBgn0010709 FBtr0084590 2 1 1 62 3R 19875163 19875181 AAGATCATCGATCCCTCCA 59 19875065 19875083 CTCCTCCGAGTTAAACTGG 59 NA DesignNoJunction Drosophila melanogaster 50 TfIIA-S FBgn0013347 FBtr0084526 2 1 1 103 3R 19716472 19716490 CAACAATGCCCTAAACCAG 59 19716387 19716405 CGTTAAGCATGAGAGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13856 FBgn0038959 FBtr0084224 3 1 1 62 3R 18230569 18230587 ATCTGGATCATCGGAATCC 58 18230610 18230631 TGAAGTAGTAATCCTTGAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr93c FBgn0045469 FBtr0084159 2 1 1 60 3R 17670053 17670072 TTTGCAGATGTGATACTCCT 58 17670012 17670031 TCATTCGTGAACTACTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 InR FBgn0013984 FBtr0084121 1 1 1 94 3R 17404349 17404367 AGAATGGGAATGAGAGCTG 59 17404214 17404292 GCTGTCGAACTGATAATAGC 58 NA Drosophila melanogaster 50 CG3337 FBgn0038871 FBtr0084107 2 1 1 60 3R 17048711 17048732 GATGATGCAAGATCTAGAACAC 58 17048672 17048691 GATAATCTTGGTGTTGTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5810 FBgn0038866 FBtr0084026 3 1 1 60 3R 16990040 16990058 CACATCTTCTCACAACTGG 58 16990081 16990100 CCACTAGCTGATTACTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0110937,FBtr0112915 3 12 12 137 3R 17037304 17037479 GATGTGATTAATCTCGCCG 58 17037580 17037598 TTCCATGATCGTGTAGAGC 59 NA Drosophila melanogaster 50 CG5798 FBgn0038862 FBtr0084016 3 1 1 103 3R 16960767 16960844 TGATAACGCCAGGAATGTC 59 16960910 16960929 CATAAGAACCACCGAATCCT 59 NA Drosophila melanogaster 50 CG5793 FBgn0038858 FBtr0084013 2 1 1 88 3R 16953767 16953852 TCAATTACATGGACGTTGTG 58 16953903 16953921 CTGGAGGTACGAAGATGTG 59 NA Drosophila melanogaster 50 Rab11 FBgn0015790 FBtr0084010,FBtr0084011 1 2 2 76 3R 16940759 16940777 TTTCATAGAAACCTCGGCC 59 16940817 16940984 TGCGATAGATCTCTGTGAG 58 NA DesignRelaxed Drosophila melanogaster 50 sec15 FBgn0038856 FBtr0084034 2 1 1 96 3R 16932384 16932402 ATCCTCTGGGAACTATTGC 58 16932242 16932261 GTTCCTTGTCGAGAATTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Dhc93AB FBgn0013812 FBtr0084046 2 1 1 86 3R 16857452 16857530 ACGTATGCAGGATCAATCG 59 16857384 16857402 CTAGAGATTGTTTCCCGCT 59 NA Drosophila melanogaster 50 GluRIIE FBgn0051201 FBtr0110837 3 1 1 109 3R 16472915 16472933 CAATATAACCGGGCTTCGT 59 16472761 16472845 GACAAGAACCATTTCTGAACTC 59 NA Drosophila melanogaster 50 CG5060 FBgn0038780 FBtr0113251,FBtr0083871 1 2 2 159 3R 16116160 16116178 AAGAAGTACAACGGGAAGC 59 16116301 16116697 TTGATCGACTGTCACTGAG 59 NA Drosophila melanogaster 50 koko FBgn0051232 FBtr0083628,FBtr0083626,FBtr0083627,FBtr0083625,FBtr0083629 2 5 5 155 3R 14229544 14229623 TACGATGAGTTCCTCATTGC 59 14229741 14229759 CATCGACCAGTACTCATCG 59 NA Drosophila melanogaster 50 PKD FBgn0038603 FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592 2 4 4 196 3R 14131625 14132352 AGCAGCTCACTGAATATCC 59 14131447 14131465 GTATTGTACTGGCAGTCCC 59 NA DesignRelaxed Drosophila melanogaster 50 PP2AB FBgn0042693 FBtr0083553,FBtr0083552 2 2 5 81 3R 13995748 13995766 TGTAGAAGGAGTAGCTCCA 58 13995811 13997259 TTTGTTAGCCAAACTGCTC 58 NA Drosophila melanogaster 50 PP2AB FBgn0042693 FBtr0083556,FBtr0083555 3 2 5 262 3R 14000710 14000728 ATCTATTCTACACGCCACC 58 14001241 14001333 GACAGCAAACATATTGATCG 57 NA DesignRelaxed Drosophila melanogaster 50 AttD FBgn0038530 FBtr0083470 2 1 1 60 3R 13451400 13451418 CATTTCACAGTCATAGCCG 58 13451441 13451460 CCAGTTTGCAAATTGAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14331 FBgn0038510 FBtr0113243,FBtr0113244 3 2 2 140 3R 13265130 13265559 ATATTGACAACGTGAGACTG 57 13264947 13265027 CCAACACAATTATGTCGCC 59 NA DesignRelaxed Drosophila melanogaster 50 Fer2 FBgn0038402 FBtr0083280 2 1 1 100 3R 11975765 11975784 GGTACTACAAACCGACTACG 59 11975629 11975704 CTGTGAGATCACTCGTATTCC 59 NA Drosophila melanogaster 50 glob1 FBgn0027657 FBtr0083247,FBtr0083246,FBtr0083248,FBtr0083245 3 4 4 111 3R 11723133 11723277 CTTACAACCAACTGAAAGGAG 58 11723042 11723060 ATGATTCCGTAGACATGGT 58 NA Drosophila melanogaster 50 CG31183 FBgn0051183 FBtr0083187 1 1 1 93 3R 11685890 11687500 GCCACAAGAAATAATCGAACTC 59 11685818 11685836 CTTGGTATCACCGTTTGGT 59 NA Drosophila melanogaster 50 CG6974 FBgn0038285 FBtr0083042 2 1 1 60 3R 10904625 10904644 TATCAACCTCTGTCCTTTGG 59 10904584 10904602 GCATAGTGAGGCATTTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3817 FBgn0038275 FBtr0083003 1 1 1 60 3R 10724734 10724753 ATTTCGAGATCGAGAAAGCA 59 10724776 10724794 TCGTCTTCATGGTTATCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3508 FBgn0038251 FBtr0082968,FBtr0082967 2 2 2 69 3R 10485972 10485990 TTTGGAGCCAAATTACGAG 58 10486023 10486105 TGCGCAGAAATTGATTCTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG8489 FBgn0038225 FBtr0082940 1 1 1 60 3R 10207150 10207168 TGACTTGGACACATTGGAG 59 10207108 10207126 CATCTGACGATTGACTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9631 FBgn0027563 FBtr0082898 3 1 1 183 3R 10051835 10051997 AAATGAGGAGTATGATGCCC 59 10051671 10051689 GTCCGAATCTATTCTGGGC 59 NA Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082805 2 1 8 86 3R 9488126 9488710 AATCATCCTCTCGTTATGGC 59 9488759 9491190 TGTAATCCTTGAGATCGCG 59 NA Drosophila melanogaster 50 yrt FBgn0004049 FBtr0082793,FBtr0114376,FBtr0114375 1 3 4 80 3R 9257183 9257201 ATTGTCAAAGATCCATCCC 57 9257060 9257139 CTTGTTGATAGTCACCCTG 57 NA Drosophila melanogaster 50 CG9813 FBgn0038143 FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767 1 6 6 80 3R 9204503 9204740 TTGCCCTACATCTACAATCC 59 9204442 9204461 GTCCAGTTCACTTACATCGT 59 NA Drosophila melanogaster 50 Lip3 FBgn0023495 FBtr0082771 3 1 1 124 3R 9196606 9196624 AAGTTCAAGCAGGATTTGG 58 9196423 9196518 TCAAGGAGTTCGTAGTCCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG6753 FBgn0038070 FBtr0082669 3 1 1 161 3R 8467361 8467379 GAAGGACGGATATGTGCTC 59 8466961 8466979 CAAAGGAGGTAGGCTAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Octbeta3R FBgn0053959 FBtr0099996 3 1 5 141 3R 8344783 8344895 ATCTTTAAGGAGGCGATTCG 59 8344661 8344679 TGGCATTCAGATCACAGTC 59 NA Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 2 15 15 121 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811941 7812031 TTCTTCAGGATGTTGGAGG 58 NA Drosophila melanogaster 50 HisCl1 FBgn0037950 FBtr0082471,FBtr0082470 3 2 3 81 3R 7614046 7614178 CGAGAGTTTATCCCATACG 57 7614223 7614241 CTCAATCTCCGTGTTAACC 57 NA Drosophila melanogaster 50 CG6782 FBgn0037912 FBtr0100465 3 1 4 220 3R 7388840 7388858 AATGCTCTGATAACCTGGA 57 7386744 7386762 ATAGGTGATGCAGATCTCG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG5276 FBgn0037900 FBtr0082390 2 1 1 60 3R 7257829 7257847 CTATCACTTCGCCCTTCTG 59 7257870 7257889 CGCAAAGTAGAAGAGTAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4674 FBgn0037856 FBtr0082325 3 1 1 97 3R 6720764 6720782 CTATAGCCAACTGCCATCC 59 6720900 6720918 AGAGCTCTTCGTATGAAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG14691 FBgn0037829 FBtr0082314 1 1 2 81 3R 6579576 6579770 TCGAATCACATACTGAAGGTG 59 6579515 6579533 TTACCAGCGAAGTCTTCAC 59 NA Drosophila melanogaster 50 Takr86C FBgn0004841 FBtr0082315,FBtr0112789 2 2 2 85 3R 6565219 6566918 ACCAAGCACTATTACAATGG 57 6565153 6565171 TAATCCGCCATAGAAGTGG 58 NA Drosophila melanogaster 50 CG34304 FBgn0085333 FBtr0112500 2 1 1 215 3R 6484461 6484482 GACAGGGAACAAATGTTAATCG 59 6484842 6484860 TTGGGTGACATACACATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31407 FBgn0051407 FBtr0082214 2 1 1 62 3R 5848898 5848916 ACTGGGACGGGATATAGAC 59 5848854 5848873 GAACCCTCGCAACTATATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082208 1 1 8 82 3R 5841636 5844226 CCAATATTAGTTCCAAGGTGG 58 5841574 5841592 GTAGACGGTTTGCTTACAG 58 NA Drosophila melanogaster 50 CG8526 FBgn0037759 FBtr0082142 3 1 1 88 3R 5627496 5627514 TTTGATTGAGTTCTGCCCA 59 5627565 5627645 TGTATGTCTTTCCCACTTCG 59 NA Drosophila melanogaster 50 CG8145 FBgn0037617 FBtr0081911 3 1 1 82 3R 4550088 4550177 GTTGTAAGGAAGTATAGTTGCG 59 4550220 4550238 GTATTGGAGATGAAGTGCG 58 NA Drosophila melanogaster 50 CG7963 FBgn0037584 FBtr0081847 2 1 1 61 3R 4188879 4188899 ACTATATTGAACAGCTCTCCG 59 4188922 4188940 GCGTGAAACTCCAATAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18749 FBgn0042182 FBtr0100545 1 1 1 80 3R 4072981 4073000 TTCGCTGATTAATTACGGCT 59 4073043 4073118 TTAAGCCTGGTCGTATTCG 59 NA Nonspecific Drosophila melanogaster 50 DNApol-iota FBgn0037554 FBtr0081798,FBtr0081797 3 2 2 224 3R 4060872 4060890 CTGTAAGCCAATATCCGTG 57 4061142 4061160 CTCACACCAGTTTCTCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2747 FBgn0037541 FBtr0081818,FBtr0081817 3 2 2 128 3R 3844030 3844049 TAATCGAATCGTTGTATGCG 58 3842719 3843939 TCTGAATATGGTTCTGCGG 59 NA Drosophila melanogaster 50 CG15186 FBgn0037448 FBtr0081674,FBtr0081673,FBtr0081672 3 3 3 97 3R 2319012 2319030 GTTAACCAGATCCCTGGAC 59 2319090 2319281 TCAACTCGTCCATATTTGCA 59 NA Drosophila melanogaster 50 Osi18 FBgn0037428 FBtr0078611 2 1 1 74 3R 2156893 2156911 CTCATTGCCCTAAAGACCT 58 2156949 2156967 AATAACCAAGGCTCCAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15580 FBgn0037398 FBtr0078622,FBtr0078621 3 2 2 93 3R 1881011 1881137 ATACCCGAATCCTATACGC 58 1880936 1880954 ATGTAGTTATTCCGACGCA 58 NA Drosophila melanogaster 50 Rm62 FBgn0003261 FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653 1 6 6 154 3R 1829622 1829746 GAGGAGAAATTGAAGACCCT 59 1829487 1829505 TTGTCACCGTGAATAGCTC 59 NA Drosophila melanogaster 50 CG1213 FBgn0037387 FBtr0078643,FBtr0078642,FBtr0078644 3 3 3 65 3R 1671125 1671143 GATGCAGCTCTTCATTGTG 59 1671243 1671262 TGGTATGAAACATACGGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 exba FBgn0037346 FBtr0078750,FBtr0078748,FBtr0078744,FBtr0078747,FBtr0078749,FBtr0078746,FBtr0078745 1 7 7 82 3R 1423978 1423999 GGTTCTATTATTCGTAAAGGGC 58 1423651 1423935 AACCGTTGACTAACCAGAG 59 NA Drosophila melanogaster 50 eIF3-S10 FBgn0037249 FBtr0078944 2 1 2 98 3R 258185 258253 CTTATTCGTGAAGTGGTGC 58 258105 258124 ATTCAGTGGGTTGAAATCCA 59 NA Drosophila melanogaster 50 pncr011:3L FBgn0083068 FBtr0091958 1 1 1 62 3L 11089808 11089826 TGCTAATTAGCGGAAGACG 59 11089852 11089870 ATGGAAGTTGGATTGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AGO3 FBgn0086780 FBtr0111170,FBtr0111171,FBtr0111172 1 3 3 116 3L 23560303 23561655 ACGGATCTAAAGGTTCATCTG 59 23561733 23561751 GAACAGAGTCAATGGGAGG 59 NA Drosophila melanogaster 50 CkIIalpha FBgn0000258 FBtr0070042,FBtr0070043 3 2 3 269 3L 23093381 23093399 GGATATCATACGAGACGGA 57 23095396 23095414 ATATTCATCCGGTTTGTGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CkIIalpha FBgn0000258 FBtr0070042,FBtr0070043 1 2 3 239 3L 23093411 23093429 AAATACTTTGGCAAGCCAG 58 23095396 23095414 ATATTCATCCGGTTTGTGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13239 FBgn0037197 FBtr0078548 3 1 1 126 3L 22854212 22854230 CCACCATCGCATACTATCC 59 22854318 22854338 AAATAGGCTTGGTAGTACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14565 FBgn0037129 FBtr0078452 2 1 1 87 3L 21737098 21737116 TTTACATGAGGATAGCGCC 59 21737029 21737047 CTCAATTTCATGGAGTCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14567 FBgn0037126 FBtr0078454 1 1 1 60 3L 21731260 21731279 CATAGCTACGAGATTTGGAG 57 21731219 21731238 CGGTAGATTGACTAGAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32442 FBgn0052442 FBtr0089797 1 1 2 141 3L 21522165 21522183 CAACTGTCACCAAATCACG 59 21521993 21522060 AAACCTTCCAGTAGAGCTC 58 NA Drosophila melanogaster 50 CG33285 FBgn0053285 FBtr0078325 2 1 1 60 3L 21081616 21081634 TGGAAGAACGACATAGTGG 58 21081574 21081593 CATAGGCTAGATCTCACTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 siz FBgn0026179 FBtr0111038,FBtr0078289,FBtr0078290 2 3 3 118 3L 21066242 21066321 CATCCGATACGATCTTCGT 59 21066401 21066421 GCGCAGATTCTTGATAAAGTC 59 NA Drosophila melanogaster 50 CG4365 FBgn0037024 FBtr0078254,FBtr0078253,FBtr0078252 1 3 3 64 3L 20792311 20792329 ATGGAGATCAAGATCCTGC 58 20792356 20792375 GTCTTCGTGTCTACAATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32228 FBgn0052228 FBtr0074836 1 1 1 60 3L 20261559 20261580 ACTTTACACTCTGGAAAGTAGG 59 20261598 20261619 GAAACTAGACATACTACTCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Deaf1 FBgn0013799 FBtr0100666,FBtr0074882 3 2 2 212 3L 19812916 19812935 TGAAGTACAAGGACAAGTGG 59 19821425 19821443 GTGTAAAGAGACGGACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15881 FBgn0036909 FBtr0074879,FBtr0074880 1 2 2 72 3L 19799700 19799718 ACGGATAACCAGTTTAGGG 58 19799807 19799825 TGATGTCCTCGACATTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 wnd FBgn0036896 FBtr0074963,FBtr0074965,FBtr0074964 2 3 3 110 3L 19620619 19620638 GTGTACGAGGATAAGTTGCA 59 19620469 19620547 TAGTTTCCGTTCTCGTTCTG 59 NA Drosophila melanogaster 50 fal FBgn0028380 FBtr0074995 3 1 1 153 3L 19290536 19290625 CCATGAATTTGATCACGAGG 58 19290741 19290759 CAGATTCTCACTGGATCCC 59 NA Drosophila melanogaster 50 CG14085 FBgn0036859 FBtr0074992 2 1 1 80 3L 19266240 19266320 TATGAGCAGGCTAAAGATCTG 59 19266362 19266380 GTCATCCTCGTCAATGGAG 59 NA Drosophila melanogaster 50 CG4306 FBgn0036787 FBtr0075117 1 1 1 60 3L 18455434 18455452 TTAAAGGCGCTATTGAGAG 57 18455392 18455410 TTAATGCTCCTCAATCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32176 FBgn0052176 FBtr0075218 3 1 1 134 3L 17427310 17427328 GAGGAACTTTGTCTGGAGG 59 17427424 17427504 CGAGATGTGTTCTTCTTTGTG 59 NA Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0075438,FBtr0112850,FBtr0075439 1 3 6 83 3L 16070897 16073864 AGAAGAGCTCAAGCAACTC 59 16073908 16073929 CTAATTACTCTAATCAACGCGG 59 NA Drosophila melanogaster 50 brm FBgn0000212 FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523 2 4 4 160 3L 15964327 15964406 GATACCATTCTAGGTCGAGG 58 15964186 15964204 CGATTCTTACGCTTTCGTC 58 NA Drosophila melanogaster 50 CG7656 FBgn0036516 FBtr0075594,FBtr0075592,FBtr0075593 2 3 3 63 3L 15580354 15580372 CGACTATCCATACTCACCG 59 15580309 15580327 GTAAACATTCGGATGCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13457 FBgn0036482 FBtr0075654,FBtr0075653 2 2 2 77 3L 15121464 15121482 ATTATACGGGACCTAGCTC 57 15121300 15121318 CATCATCGTAGGTGGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 cp309 FBgn0086690 FBtr0099992 3 1 2 85 3L 15074253 15074442 TGACTATAAGCCTGCAACC 59 15074186 15074205 TAATAAGGGAGGTATTCGCG 59 NA Drosophila melanogaster 50 CG13461 FBgn0036468 FBtr0075664 3 1 1 60 3L 15045342 15045363 AAATAGCGAGGATAATCAGGAG 59 15045303 15045321 ATCTTCCTCATCATCTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HGTX FBgn0040318 FBtr0114619,FBtr0075720 1 2 2 93 3L 14577188 14583109 CAGGTTAAGGTCTGGTTCC 59 14577113 14577131 CCATATCGTCCTGTTTCCT 58 NA Drosophila melanogaster 50 CG9598 FBgn0036424 FBtr0075727 1 1 1 80 3L 14407794 14407882 GGCTAAGGAAATTACGATCCA 59 14407734 14407755 ATTCGATCACCCTTCTTTAGAC 59 NA Drosophila melanogaster 50 CG32137 FBgn0052137 FBtr0075758,FBtr0075757 1 2 2 125 3L 13934568 13952640 AAATTGAGAAACTCGAGCAG 58 13952728 13952746 TCTGCAGCTTATCCTTCAG 59 NA Drosophila melanogaster 50 stv FBgn0086708 FBtr0075806,FBtr0075809,FBtr0075807 2 3 5 84 3L 13474163 13474181 GACATGGACAACATGTTCC 58 13474229 13474325 GGAAACCAAAGTGTGAGTC 58 NA Drosophila melanogaster 50 CG10732 FBgn0036365 FBtr0075851,FBtr0075852 1 2 2 200 3L 13437396 13437476 ATTAAGCGAGATGAGCGAC 59 13437640 13437658 TCGTTAAGGTGAGTCTTGG 58 NA Drosophila melanogaster 50 CG10984 FBgn0036305 FBtr0075920,FBtr0075919,FBtr0075921 2 3 3 171 3L 12746015 12746095 AAATTAAGGAGTCCATGGTG 57 12746229 12746247 AATGTGTCAAAGTCGTCAC 58 NA DesignRelaxed Drosophila melanogaster 50 CG10632 FBgn0036302 FBtr0114612,FBtr0114609 2 2 4 163 3L 12533237 12533498 ATGTCTACAAGGCCAATCG 59 12531551 12531569 CAGAGAACCAATCCGTAGG 59 NA Drosophila melanogaster 50 CG6931 FBgn0036236 FBtr0076048 2 1 1 88 3L 11984177 11984255 ATATGCTCCCAACGATATTAGG 59 11984304 11984322 TGGTTTCTATGTTCTCCCG 58 NA Drosophila melanogaster 50 CG11588 FBgn0036221 FBtr0076038 3 1 1 60 3L 11914787 11914808 AGTCAATATCGATGTATGTCCC 59 11914829 11914847 GGCCATCAAATAGCTAGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33269 FBgn0053269 FBtr0076148 2 1 1 60 3L 11575197 11575215 TGAAATACCTGTTCGTGGT 58 11575155 11575174 CTAGAAGATGAAGCCACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32081 FBgn0052081 FBtr0076198 3 1 1 81 3L 11020802 11020880 CTCACCCGATATCTGATATTGG 59 11020919 11020940 GATAATGGAATGGCCATAACTC 58 NA Drosophila melanogaster 50 Ard1 FBgn0036064 FBtr0076349,FBtr0076352,FBtr0076351,FBtr0076350,FBtr0076348 3 5 5 67 3L 9966736 9966754 CTGAACCTCTACACCAACG 59 9966785 9966803 CCATCGGCATAGTACTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385 1 8 8 111 3L 9825956 9826035 GAGTTAACCGGGACTACAC 59 9826110 9826128 CTTTCCCAAACTTAGCCGA 59 NA InUTR Drosophila melanogaster 50 CG6749 FBgn0036040 FBtr0076410 1 1 1 80 3L 9725537 9726053 CAATCAACTGATACAGTTGGAC 59 9725478 9725497 AATCTATTCCCGCTTAGCTG 59 NA Drosophila melanogaster 50 CG3280 FBgn0036017 FBtr0076381 2 1 1 80 3L 9600542 9600563 GATACTGGTCAATATACTGGTG 57 9600604 9600768 TCCTCAGAGTGATTAACCA 57 NA Drosophila melanogaster 50 Uch-L3 FBgn0011327 FBtr0076472 2 1 1 60 3L 9469296 9469315 ATCTTGGTGAGATCAAGTCG 59 9469255 9469273 TTCTCAATAATCGGACGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32043 FBgn0052043 FBtr0114368,FBtr0076465,FBtr0114367,FBtr0076466 2 4 4 107 3L 9463440 9463458 AAATTCGCTCGATATCTGG 57 9463529 9463669 CTTCGTGTAGATTTCCGTG 58 NA Drosophila melanogaster 50 CG4641 FBgn0035967 FBtr0076533 2 1 1 60 3L 9136958 9136977 CCAAAGAAGGTAATGCTGGA 59 9137000 9137018 GATGGATACTCGGTCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL14 FBgn0017579 FBtr0076633 1 1 1 106 3L 8594424 8594442 GATTCGTACAAACTGGTCG 58 8594512 8594762 ACCATCTACCAGAACTCTG 57 NA Nonspecific Drosophila melanogaster 50 Gug FBgn0010825 FBtr0076619,FBtr0076618 2 2 4 81 3L 8463408 8463429 CCAAATATGCTTATACCTAGGG 57 8463468 8463540 CCTGTAAATACTGTAGTTGGTC 58 NA Drosophila melanogaster 50 exo70 FBgn0035892 FBtr0076612 3 1 1 89 3L 8407367 8407449 CTCGTCTTCAGCAAATATTCG 59 8407500 8407518 TAATGGAGAACCCTGTGGA 59 NA Drosophila melanogaster 50 Jon66Cii FBgn0035887 FBtr0076666 1 1 1 73 3L 8386466 8386484 TAACTGTCTACTTCGGAGC 58 8386411 8386429 GATAAAGTTACCGTTGCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ect4 FBgn0085402 FBtr0112598,FBtr0112601 1 2 5 87 3L 8086361 8086379 GGCAAATCAATACCAGCTC 58 8086430 8091456 CTGTTGACAACCTGTTGTG 59 NA Drosophila melanogaster 50 Clk FBgn0023076 FBtr0100132,FBtr0100134,FBtr0076785 3 3 3 90 3L 7760034 7760052 CTACACTCATTTGAGACGC 58 7759909 7759981 GGTATCGTTACGAAAGTAGC 58 NA Drosophila melanogaster 50 lqf FBgn0028582 FBtr0076796,FBtr0076795,FBtr0112941,FBtr0076797,FBtr0076798,FBtr0076794 1 6 6 80 3L 7527254 7527341 GCAGGATTTCAAGGATCCA 59 7527383 7527403 AGCAGATCTAGCAAATGACTC 59 NA Drosophila melanogaster 50 CG18769 FBgn0042185 FBtr0076973,FBtr0076970,FBtr0076972,FBtr0076971 1 4 6 163 3L 6544995 6545013 CACCACCCATAGAAGTCTC 59 6555512 6583715 CATAGATGTCTTCTCCCGT 58 NA Drosophila melanogaster 50 CG13299 FBgn0035694 FBtr0077013 2 1 1 60 3L 6225377 6225396 TCTTCCTTATCGGATGTCTC 58 6225273 6225292 CTGAATCTATCGAATGGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10483 FBgn0035649 FBtr0077077 2 1 1 86 3L 5911699 5911869 GTTTATTCATCGACGTGGT 57 5911631 5911650 AATTAGACTCATGGACAGGG 58 NA Drosophila melanogaster 50 CG10576 FBgn0035630 FBtr0077121,FBtr0077122 2 2 2 211 3L 5757777 5757795 CTGACTACACGTTAAAGGC 58 5756865 5757540 GAGGGAGTAGTTATTGGCG 59 NA DesignRelaxed Drosophila melanogaster 50 Ubp64E FBgn0016756 FBtr0077096,FBtr0077095,FBtr0077097 3 3 3 99 3L 5751686 5751765 GTGACTAGTATCACCCAAGAG 59 5751826 5751844 ACATGTATGCATTGGTGCT 59 NA Drosophila melanogaster 50 CG34391 FBgn0085420 FBtr0112634 2 1 1 80 3L 5426261 5426279 GCTACTATATGTGCCAGGT 58 5426323 5426405 AAATATTTGGTGGCACGAC 58 NA Drosophila melanogaster 50 Gen FBgn0027914 FBtr0077176 2 1 1 86 3L 5144213 5144287 TCTCTGGAAAGAACAACGAC 59 5144146 5144164 TCTTCGTTGGGAAAGTCAG 59 NA Drosophila melanogaster 50 CG33764 FBgn0053764 FBtr0091765 3 1 1 171 3L 4267160 4267243 TAGCAAAGTAAAGGTGCGT 59 4267007 4267028 GCAAGAGTGGTTAATATTGGAG 59 NA Drosophila melanogaster 50 ImpL2 FBgn0001257 FBtr0073248,FBtr0073249,FBtr0073250 1 3 3 98 3L 4224998 4225016 ATCAAGTGGGAGGATATGG 58 4224843 4224936 TTCCTCATTAAGTACGGGA 57 NA Drosophila melanogaster 50 CG12766 FBgn0035476 FBtr0073172 1 1 1 80 3L 3938887 3938968 CCGATATGTGATTGAGCTG 58 3938825 3938844 AAGACATTGAAGTTCTCCTC 57 NA Drosophila melanogaster 50 Ubi-p63E FBgn0003943 FBtr0073179,FBtr0073177,FBtr0073178 2 3 3 90 3L 3901649 3901667 AGACAAGGAAGGAATTCCC 58 3901577 3901595 AATGTTGTAATCGGACAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 enc FBgn0004875 FBtr0073153,FBtr0073152,FBtr0112844 1 3 4 83 3L 3833663 3836032 AGCAGTGGTTCCATTTACC 59 3836079 3836097 TGACTGGTATTGATTGCCC 59 NA Nonspecific Drosophila melanogaster 50 CG33160 FBgn0053160 FBtr0073102 1 1 1 60 3L 3206008 3206026 GCAAGACCCTCAATATGGA 59 3205966 3205984 TTGGCTCCAATCATATCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32846 FBgn0052846 FBtr0073009 1 1 1 61 3L 2951001 2951019 CTTAGGCAGGATCAACCAG 59 2950958 2950976 TCTGTTCAGTCTCATCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12182 FBgn0028504 FBtr0072955 2 1 1 98 3L 2597134 2597203 CTTTGTGGAGATCTCCCTC 59 2597054 2597072 GACTCGTAGAGTTCTTGCA 59 NA Drosophila melanogaster 50 CG34259 FBgn0085288 FBtr0112453 3 1 1 60 3L 2027054 2027072 TACCAGAAGAAAGTGTGCC 59 2027095 2027114 GGGTGTCCTCATTGTATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12361 FBgn0035292 FBtr0072839 2 1 1 129 3L 1924963 1925258 ATCCCTACATGAGTGTTGG 58 1925350 1925428 CTCTGGGAATCTGAGAAGAC 59 NA Drosophila melanogaster 50 RpL23A FBgn0026372 FBtr0072805 2 1 1 136 3L 1667571 1667589 CATCAAGTACCCACTGACC 59 1667453 1667471 CCACCTTGATGTCGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33791 FBgn0035240 FBtr0091792,FBtr0091794,FBtr0091795,FBtr0091793 3 4 4 125 3L 1606787 1606805 AAGTTGATCAAGGAGGGAG 58 1606891 1606971 CCAAGAGGAATACTTTATGGTC 58 NA Nonspecific Drosophila melanogaster 50 CG2277 FBgn0035204 FBtr0072729 1 1 1 60 3L 1306445 1306464 CCTGATGAACATCTACAGTC 57 1306404 1306424 GCTCTTGAAATAGAGACTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Klp61F FBgn0004378 FBtr0072733 2 1 1 89 3L 1244992 1245203 CTGGGAAGATGACTCTGAC 59 1244921 1244939 ATAGTGTACTCCACCTCCA 58 NA Drosophila melanogaster 50 CG32479 FBgn0052479 FBtr0072589 2 1 1 119 3L 890795 890874 ATGCTGGAGGTGATTAAGC 59 891014 891033 GCCCTTATTACGATTGTTGC 59 NA Drosophila melanogaster 50 CG3371 FBgn0035153 FBtr0072610 2 1 1 65 3L 683157 683175 ACCTAAAGCTACTCGAGGA 59 683110 683128 GTGTGATCAGCTCAATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17090 FBgn0035142 FBtr0072552,FBtr0072551 1 2 2 104 3L 569806 569887 CGGAATATGAGGTCCTTGAG 59 569954 569972 TCTTCAGGATCTTGATGGC 59 NA Drosophila melanogaster 50 CG34454 FBgn0085483 FBtr0112760 3 1 1 60 3L 232110 232130 GAATACCAGGAGGTCTTACAC 59 232070 232089 TTCAGAAATTCCTTGGTTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-841d FBgn0083016 FBtr0113524 1 1 1 60 2R 17218438 17218456 ACTAGCTTCGTGTGATGAC 59 17218480 17218498 ATGGATAAGACGCATCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR33655 FBgn0053655 FBtr0091634 3 1 1 79 2R 17207402 17207420 TACGATCTAACATGCGAGG 58 17207280 17207299 GCTTTCGATTTACCATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tamo FBgn0041582 FBtr0072281,FBtr0072282 1 2 2 150 2R 20017461 20017544 CTCTCAAGACCTATTCGGG 58 20017329 20017347 ACATTCGTAACCTGATCCG 59 NA Drosophila melanogaster 50 CG30172 FBgn0050172 FBtr0072193 3 1 1 78 2R 19918532 19918550 CAGATTATGTGCATCCTGG 57 19918346 19918364 TTATAACTTCTGGCAGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3735 FBgn0034933 FBtr0072210 2 1 1 158 2R 19826122 19826195 TGGCAGTCAAGATGATCAG 59 19825982 19826001 AGTTTGAAGTTGTCATCCGT 59 NA Drosophila melanogaster 50 Upf3 FBgn0034923 FBtr0072221 1 1 2 135 2R 19780929 19781005 GGAATAAAGATCGACCATCGA 59 19780814 19780832 TTCGAAGTCTTCTCCTCCA 59 NA Drosophila melanogaster 50 CG5539 FBgn0034907 FBtr0072123 2 1 1 60 2R 19692535 19692553 ATAAGACTCTGAACAGCGG 59 19692574 19692595 TAAACTATCCAGTATTTGGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6018 FBgn0034736 FBtr0071835 2 1 1 60 2R 18439104 18439123 ACGTATCTCTATCGATTCGA 57 18439146 18439164 ACTTCAAGATGCGATAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 qkr58E-1 FBgn0022986 FBtr0071843 3 1 1 94 2R 18301783 18301926 GTAAAGACGCACAGATCAC 58 18301707 18301725 GAGTGCTTTGATGTTTGGG 59 NA DesignRelaxed Drosophila melanogaster 50 Rtf1 FBgn0034722 FBtr0071820 3 1 1 174 2R 18264934 18264952 CGAAGATGACATGCAACTG 59 18265089 18265165 ATTCGTATTGACTGGTAGCG 59 NA Drosophila melanogaster 50 CG3290 FBgn0034711 FBtr0071782 1 1 1 120 2R 18094151 18094238 TTGTGTTCATAGAGGGTGG 58 18094049 18094067 ATGTTGGTCATTTCACGAG 58 NA Drosophila melanogaster 50 GM130 FBgn0034697 FBtr0071789,FBtr0071790 1 2 2 130 2R 18013744 18013762 TAAAGAGGCCAGTCAAGTG 59 18013577 18013595 TCTTCAGCTGGAATTCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15678 FBgn0034647 FBtr0071682 2 1 1 66 2R 17549141 17549159 AGTAATCGGCAATAGCACC 59 17549093 17549111 GTTACCCGTGTACTTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10494 FBgn0034634 FBtr0071699,FBtr0071700 2 2 2 89 2R 17405524 17405545 GCGATAGTGATTTCAATGACAG 59 17405397 17405416 AATCAACCTCTTCGTCTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 IM14 FBgn0067905 FBtr0100038 1 1 1 109 2R 16757933 16757951 AACTGTCTGAAGATCTGCG 59 16758087 16758106 TCAGTTTGAATCAACGTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)05510 FBgn0028622 FBtr0086258 2 1 1 74 2R 16451346 16451364 ACAAGGTCTACGAGATCTC 57 16451217 16451308 GGACCTCATTCTTGTTGAC 58 NA DesignRelaxed Drosophila melanogaster 50 Obp56g FBgn0034474 FBtr0086343,FBtr0086342 1 2 2 82 2R 15671237 15671255 AGTGCATTCTGGTCAAGAG 59 15671173 15671191 CGAGTTCGCATAGTAAGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10474 FBgn0034427 FBtr0086561 3 1 1 69 2R 15173163 15173182 TATATGGTCAGTAGTCCGGG 59 15173113 15173132 ATTTCTCAGGATTCGCTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cora FBgn0010434 FBtr0086507,FBtr0086509 2 2 4 184 2R 15124299 15124318 GTTCAATAGGACTCTGTCCG 59 15124562 15125669 CCTTATCAGCATCCTTCTCC 59 NA Drosophila melanogaster 50 CG10737 FBgn0034420 FBtr0086588,FBtr0086585 1 2 5 81 2R 15062799 15063696 AAAGCAATTCACTTGGACC 58 15063739 15063759 GAGGATTCTGAAATTGAGGAG 58 NA Drosophila melanogaster 50 CG30116 FBgn0028496 FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718 2 4 4 80 2R 14363162 14363624 GATTATCGCCTTATGAACGTG 59 14363102 14363120 CGATTGAAAGGCTTGTTCC 59 NA Drosophila melanogaster 50 CG15065 FBgn0040734 FBtr0086667 1 1 1 60 2R 14277508 14277526 CTTGGTCTTTCTATGCGGT 59 14277615 14277634 ATTACCCGGATTTAACGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14490 FBgn0034281 FBtr0086801 1 1 1 95 2R 13748343 13748361 TCTCAACGTTATCCTGGTG 58 13748420 13748438 GTAGACAAGTCCACTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Klp54D FBgn0004377 FBtr0086826 1 1 1 80 2R 13450721 13450739 TACCAAGGAGTTGAACCTG 58 13450782 13451246 GGGATGCTAATACTGTCTGG 59 NA Drosophila melanogaster 50 CG11419 FBgn0034231 FBtr0086951 3 1 1 72 2R 13405277 13405298 CATATACACGGATTACAAGCTG 59 13405226 13405244 GAAGTTCGTTCCAGATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30103 FBgn0050103 FBtr0086929 3 1 1 80 2R 13381926 13381944 ATAAGACCGGATACCAAGG 58 13381988 13382065 TGTTTCCTTATTGATGGCG 58 NA Drosophila melanogaster 50 Nup62 FBgn0034118 FBtr0087150 2 1 1 60 2R 12233113 12233132 CCACTGATCCCATCATACAG 59 12233153 12233173 CACTGCAACGAATTCATATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hmgs FBgn0010611 FBtr0087147,FBtr0087149,FBtr0087148,FBtr0087145,FBtr0087146 3 5 5 60 2R 12227690 12227708 CAGAAGGATACTTCCAAGC 57 12227731 12227750 TGTGGAATAGGATAGCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33465 FBgn0053465 FBtr0100534 3 1 1 91 2R 11707212 11707230 ATACCCATCCCAGATTCAC 58 11707084 11707159 CTTGACAAGATCTGAGTTTGG 58 NA Drosophila melanogaster 50 CG12857 FBgn0033963 FBtr0087469 3 1 1 67 2R 10646180 10646198 TGTGAACACCGAGATTGAG 59 10646076 10646094 TCCTCTTGTTCCAATCGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Sin1 FBgn0033935 FBtr0087487 1 1 1 60 2R 10300204 10300223 TTACAATATCCCGACGTTCC 59 10300244 10300264 CCTCTGTCATATACAAAGCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shot FBgn0013733 FBtr0087619,FBtr0087617,FBtr0087616,FBtr0087621 2 4 6 80 2R 9787942 9788949 AACTAGATAAACTGCTCGGAG 59 9787882 9787900 GTATAAGTCGTCCTCCAGC 59 NA Drosophila melanogaster 50 CG13343 FBgn0033882 FBtr0087585 2 1 1 60 2R 9747266 9747284 ACATTGGTTGGATCTACGA 58 9747307 9747326 ACTCCGGTGATGTTAAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13339 FBgn0033871 FBtr0087632 1 1 1 65 2R 9712869 9712889 GTAGTTTAATGCAGGATCCTG 58 9712916 9712934 AGCCCTTTATGCAATTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33156 FBgn0053156 FBtr0113450,FBtr0087682,FBtr0087684,FBtr0087683,FBtr0087681 3 5 5 83 2R 9436514 9436532 TTATGGTGACTCCCATCTG 58 9436390 9436470 ATACTGATATCTTCAGCTCCAC 59 NA Drosophila melanogaster 50 CG5970 FBgn0033842 FBtr0087701 2 1 1 102 2R 9371547 9371565 CCCTAATCCATCATGTGCT 59 9371395 9371481 ATATCCACTTCGGTTACGC 59 NA Drosophila melanogaster 50 AttC FBgn0041579 FBtr0087653 2 1 1 96 2R 9281505 9281523 TATTGGACAAGTGTTCGCA 59 9281582 9281664 GTGTCCATGATTGTTGTAGC 59 NA Drosophila melanogaster 50 CG4712 FBgn0033818 FBtr0087757,FBtr0087758 3 2 2 158 2R 9136976 9136994 AGATGTAGAAACGGTTTGC 58 9136767 9136787 CGATTGTGCTTAGTCATATGC 59 NA DesignNoJunction Drosophila melanogaster 50 Mp20 FBgn0002789 FBtr0005009,FBtr0087745 3 2 2 82 2R 9134625 9134644 CATCAACAACTTCCAGAAGG 58 9134689 9134707 TCTTCTCGTACAGATCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17059 FBgn0040754 FBtr0087739 1 1 1 94 2R 9107892 9107910 AACATGAAACCGTCTCTGG 59 9108278 9108296 ATCATCATTCCTGTGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12488 FBgn0033772 FBtr0087851 2 1 1 87 2R 8636959 8637039 AGCAGAAGATTGTCTACTCC 58 8637089 8637107 TTCGAACGGATGTTAACCA 59 NA Drosophila melanogaster 50 Lac FBgn0010238 FBtr0087932,FBtr0087933 2 2 2 81 2R 8341112 8341130 ATATCCTACATCACGCAGG 58 8341175 8341193 ACTCTTTGGCATACTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rho-7 FBgn0033672 FBtr0088045 3 1 1 112 2R 7874864 7874883 AATTCTTAGCGGTCTACCTC 58 7874717 7874789 CATTATAGCTCCAGACGCA 59 NA Drosophila melanogaster 50 betaTry FBgn0010357 FBtr0088122 1 1 1 61 2R 7234352 7234370 ATGTCAACGTGAACATCGT 59 7234395 7234413 GTTTCCGTAGCCATAGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13213 FBgn0033609 FBtr0088180,FBtr0088178,FBtr0088179 3 3 3 82 2R 7174275 7174293 CCAGAAGCTAAAGGTCCTG 59 7174158 7174231 CAGGTGAGTCCATAATTTCCT 59 NA Drosophila melanogaster 50 CG12907 FBgn0033511 FBtr0088351 3 1 1 75 2R 6241106 6241124 AGAAATTGAACTGCGTTCC 58 6241163 6241181 TGGTCCCAGAATAATCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hr46 FBgn0000448 FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367 2 4 4 110 2R 6095624 6095704 CAATTTCCGCGATATTTCC 57 6095532 6095551 GAATCTATCGAGAACAGCTC 57 NA Drosophila melanogaster 50 l(2)k10201 FBgn0016970 FBtr0088505 2 1 1 60 2R 5287183 5287201 GCAAAGATCAGAGATCTGG 57 5287225 5287243 TTAATGGCCTCCTTCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(var)2-10 FBgn0003612 FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088575,FBtr0088572,FBtr0088574,FBtr0088573,FBtr0088578 1 9 9 80 2R 5005945 5006020 TCATAGATGGCTACTTCCAG 58 5006060 5006081 CATCCTGATGAAGTTGAATCTC 58 NA Drosophila melanogaster 50 babo FBgn0011300 FBtr0088658 2 1 2 90 2R 4842282 4842300 TATATGTGAAACGGACGGC 59 4842354 4842479 AGACTTGTGCAGACATCTG 59 NA Drosophila melanogaster 50 Rya-r44F FBgn0011286 FBtr0088637,FBtr0088639 2 2 4 129 2R 4757835 4757853 CTTCGAATTCGAGGTCCTC 59 4757944 4758440 GACTTTCTCTTCATTGTGTCC 58 NA Drosophila melanogaster 50 CSN7 FBgn0028836 FBtr0088742 1 1 1 91 2R 4315223 4315241 CAATTGCATCGAAATGCAG 58 4315293 4315507 GATTGATGAGATCTTGTTCCAC 59 NA Drosophila melanogaster 50 CG11508 FBgn0033267 FBtr0088817,FBtr0114490,FBtr0088818 3 3 3 60 2R 4018110 4018131 GGATACCACCTATATTACAACG 57 4018071 4018090 ATAGTCGGCTAGAAAGTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12824 FBgn0033222 FBtr0088830,FBtr0113050 2 2 2 106 2R 3678248 3678269 CTACTTAATGGGTTACTCATCC 57 3678389 3678407 CATAGAATGCCATTCCGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012 3 7 7 84 2R 3287432 3287450 GATCTACGACAAGGAGACG 59 3287308 3287384 GGTGACTTCATTCCTGGTC 59 NA Drosophila melanogaster 50 l(2)01289 FBgn0010482 FBtr0086136 3 1 4 86 2R 2620751 2625473 TCTGTTCTACGACAAAGACC 59 2620684 2620703 ATATCGTTCTGATCGCACTC 59 NA Drosophila melanogaster 50 CG3270 FBgn0033093 FBtr0086123 2 1 1 60 2R 2582493 2582513 AAGTTTACCACACTGGATCTG 59 2582534 2582553 TAGGCTGTTGGTTTACAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Adf1 FBgn0000054 FBtr0086111,FBtr0086113,FBtr0086112 2 3 3 144 2R 2554510 2554588 ATCCGCATGAAATTACTGTC 58 2554695 2554713 ATCTTGATGGTGTTGAGCA 59 NA Drosophila melanogaster 50 CG17528 FBgn0032999 FBtr0111275,FBtr0111277,FBtr0111274,FBtr0111276 3 4 4 83 2R 705345 705363 TTCTATATGCTGTCTGCGG 59 705226 705299 AAACGTCAATCTTTAGCCCA 59 NA Drosophila melanogaster 50 CG17665 FBgn0039997 FBtr0111269,FBtr0111268 2 2 2 84 2R 124473 124493 GAGTTTGAGACATACGAACAG 58 124352 124429 GCAATATGTCCTGTATACACC 58 NA Drosophila melanogaster 50 CR12628 FBgn0042701 FBtr0085952 2 1 1 60 2L 22226202 22226220 AAACACATACAATGGCCAG 58 22226244 22226262 CTCTTGAATACGGGATTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snRNA:U4:38AB FBgn0003931 FBtr0081292 2 1 1 83 2L 19810764 19810782 TGAAGTTCTACTGAGGTGC 58 19810829 19810847 GTAGTGGACGGTATTTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34137 FBgn0083973 FBtr0110947 1 1 1 60 2L 22152356 22152374 GTATTCTTCAACGCGATCC 58 22152398 22152416 GGGCTTAGCCCTATTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6448 FBgn0032976 FBtr0113044,FBtr0085939,FBtr0113046,FBtr0085938 2 4 5 85 2L 22140895 22140913 GGAGCATTTAGATCTTGCC 58 22140962 22141603 AAACAGCATCTTGATCCTG 57 NA Drosophila melanogaster 50 Gr39a FBgn0041244 FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510 2 4 4 90 2L 21297292 21297310 AAACAGCAAAGATGCTGAC 58 21297471 21297490 TTCTGTCGAAGGTTCTTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Gr39a FBgn0041244 FBtr0081508,FBtr0081511,FBtr0081509,FBtr0081510 2 4 4 90 2L 21297292 21297310 AAACAGCAAAGATGCTGAC 58 21297471 21297490 TTCTGTCGAAGGTTCTTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9264 FBgn0032911 FBtr0081463,FBtr0081462 2 2 2 80 2L 21079050 21079070 TCTAATTACGGGATTGGTCAG 59 21079110 21079298 TCCTGAGATCTATAATGCACC 58 NA Drosophila melanogaster 50 CG9316 FBgn0032878 FBtr0081396 2 1 1 216 2L 20725040 20725116 CTATATTGACGCATCCGGA 59 20724782 20724800 CAGCTACGGTTCCTTATGG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 spi FBgn0005672 FBtr0081271,FBtr0081269,FBtr0081268,FBtr0100597 3 4 7 209 2L 19571730 19571748 TACAGAAACGAGAAGAGCC 59 19569194 19569212 ACGTAAACGTTGAGTTAGG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG31798 FBgn0051798 FBtr0081200 2 1 1 72 2L 19395239 19395257 GTACTACCTGATCCAAGGG 58 19395350 19395369 TCTCTTGTAACACGAAGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 amos FBgn0003270 FBtr0081081 3 1 1 68 2L 18596360 18596378 TACGAAACTCTGCAAATGG 58 18596310 18596328 CTAGTAGTCTCTGGACAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17681 FBgn0032668 FBtr0081038 2 1 1 61 2L 18154047 18154067 GATTGTATGAGAAGGAGTTGG 58 18154090 18154161 GAATCCACTTTGCAGTCTC 58 NA DesignRelaxed Drosophila melanogaster 50 CG13282 FBgn0032612 FBtr0080929 1 1 1 117 2L 16833482 16833500 AAGATTATCATCCACGGCT 58 16833243 16833261 AAAGGATACTCCAGTCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 mdy FBgn0004797 FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917 1 4 4 86 2L 16820786 16820804 ATAACGCCCTAATCCTGAG 58 16820919 16825419 CAATTATTTCCATGGCTAGACC 59 NA Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080898,FBtr0080903,FBtr0080900 2 3 13 98 2L 16779121 16779139 AAGGGTATTGAGGATCCCA 59 16779199 16780558 GAAGAACACCTTTGTGTTACC 59 NA Drosophila melanogaster 50 CG31812 FBgn0051812 FBtr0080890 3 1 1 62 2L 16730068 16730089 CTCAGCTGGTTATTTAATGGAC 59 16730112 16730130 TTCTCATTGTGCTCTTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4631 FBgn0032590 FBtr0080871 1 1 1 60 2L 16608979 16608997 ACACCAAACCAGTATTCCC 57 16609018 16609039 GCACTATCTTTCCTTGATTGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 BicC FBgn0000182 FBtr0080805,FBtr0080804,FBtr0080803 3 3 3 156 2L 16045383 16045852 CAATGTTCAGGTCATATTCTCC 58 16046029 16046047 GACATTCACCAGGATTTGG 58 NA Drosophila melanogaster 50 ms(2)35Ci FBgn0011239 FBtr0080732 1 1 2 62 2L 15293144 15293219 GCCTGTAATTGTATCTGCG 58 15293245 15293263 CACTAAACCTCCGATTGGT 59 NA DesignRelaxed Drosophila melanogaster 50 vig FBgn0024183 FBtr0080719,FBtr0080718,FBtr0080721,FBtr0080720 1 4 4 81 2L 15065447 15066946 GATAGAACTGGTGTGAAGTC 57 15065385 15065403 CATCAATAGCCTCCTTGAC 57 NA Drosophila melanogaster 50 ck FBgn0000317 FBtr0080723,FBtr0080724 3 2 2 84 2L 15051456 15051541 GGCTGCTGATTACAAATATCTG 59 15051393 15051412 TCGAATGTCAGAGAATTCGG 59 NA Drosophila melanogaster 50 CG15279 FBgn0028886 FBtr0100264 1 1 3 94 2L 14848737 14848758 CCGATTTACTATCTGGAAATGG 58 14848335 14848683 TTGTCATACTCTTTCATCGC 57 NA Drosophila melanogaster 50 CG32970 FBgn0052970 FBtr0114461,FBtr0080622 3 2 2 81 2L 14309124 14309142 AGCAACACTTTATACCGCT 59 14309420 14309438 TTAGGCTGGCTTTCTATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG16884 FBgn0028544 FBtr0080557 1 1 1 96 2L 13946039 13947098 GAAAGTATTCATCTGCTTAGCC 59 13945964 13945982 CTTGTCCAGCTTCTTCTCC 59 NA Drosophila melanogaster 50 cenG1A FBgn0028509 FBtr0080548,FBtr0080546,FBtr0080547 1 3 3 148 2L 13896607 13896625 GGAGATCTTCAAGAGCCTG 59 13896737 13896819 TAGCCCATTCAGGATTTGG 59 NA Drosophila melanogaster 50 Rep4 FBgn0028406 FBtr0080478 1 1 1 130 2L 13285634 13285706 TCATTACAACAGATGCCGA 58 13285522 13285540 ATACTCCGTTATCATGCGG 59 NA Drosophila melanogaster 50 CG5458 FBgn0032478 FBtr0080437 2 1 1 60 2L 13184328 13184349 CTTCAACAATCGATACCTTCTG 59 13184370 13184388 CGCCTTCATGTTGTAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6180 FBgn0032453 FBtr0080398 3 1 1 68 2L 12707871 12707889 ATTCAGCTGTCAACTTTCC 57 12707919 12707939 CCTTGGTTAGGATAGAATTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17036 FBgn0032449 FBtr0080408 2 1 1 60 2L 12699261 12699279 ATCAGTACGTGGTTTACGG 59 12699219 12699240 GACCCAATTATGGATATTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nub FBgn0085424 FBtr0112642 2 1 2 119 2L 12614102 12614120 ATAAGGTCCTGGAACTGAC 58 12614201 12622983 GACTGATATCATTTGGGTCCT 59 NA Drosophila melanogaster 50 rab3-GAP FBgn0027505 FBtr0080302,FBtr0080301 3 2 2 91 2L 12060791 12060877 CAACAACTGTGATGAAGTAGTG 59 12060721 12060739 AGTCATGGATGTGTTCACC 59 NA Drosophila melanogaster 50 Nos FBgn0011676 FBtr0100487,FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100489,FBtr0100486 3 8 10 90 2L 10805681 10805699 CCAGTTGATTGTCCAGGAG 59 10804887 10805627 AATGCACTTCCTGATGGTC 59 NA Drosophila melanogaster 50 Rsf1 FBgn0011305 FBtr0080079 2 1 1 88 2L 10263356 10263374 CAATCTGACCGACAAAGTG 58 10263286 10263304 GATTGAAGGCTATCCACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pten FBgn0026379 FBtr0089905,FBtr0089902,FBtr0089901,FBtr0089903,FBtr0089900,FBtr0089904 3 6 6 87 2L 10258782 10258800 TCAGCGTCGATATGTTCAG 59 10258642 10258734 GCGTATTTCACATACGTTAAGG 59 NA Drosophila melanogaster 50 NPC1 FBgn0024320 FBtr0079957 3 1 1 99 2L 10216932 10216950 GTTAAACTTTGGGCTTCGC 59 10216791 10216871 TGATGATTATCTGTTCCAGCC 59 NA Drosophila melanogaster 50 CG5734 FBgn0032191 FBtr0079960 2 1 1 60 2L 10206181 10206199 TACTGGGACTCCAGTAGAG 58 10206139 10206157 AGAGCAAATTCAATGCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13125 FBgn0032163 FBtr0079898 2 1 2 103 2L 9924157 9924307 GATACGGTAGAAGGCATCG 59 9924072 9924090 AGGGACAATGGGAAATCTG 59 NA Drosophila melanogaster 50 CG4537 FBgn0032153 FBtr0113031 3 1 1 64 2L 9890998 9891016 AAATCAACGAGAACAAGGC 58 9891044 9891062 TAAAGCAGTCCCTATGGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34183 FBgn0085212 FBtr0112376 1 1 1 77 2L 9890408 9890426 AAACTTTGCGGATATCCAC 58 9890286 9890304 TTTGGAAGCGGAGATACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33299 FBgn0053299 FBtr0079845 1 1 1 60 2L 9657068 9657087 AAGAAGATACCCTACACCGT 59 9657110 9657128 CGGGATAAGGTTTCTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gcm FBgn0014179 FBtr0079855 3 1 1 60 2L 9580391 9580409 ATACGTCCAGTTTGACCAG 59 9580349 9580369 CCATTGTAGTAGCCATAATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hnf4 FBgn0004914 FBtr0079747,FBtr0079749,FBtr0079748,FBtr0112846 1 4 4 99 2L 8688854 8688935 TCTTCTTCGATCCCAATGC 59 8688773 8688793 CGATCTGATATGTAGTCCTCG 59 NA Drosophila melanogaster 50 CG13095 FBgn0032049 FBtr0079701 3 1 1 60 2L 8495405 8495424 CTTACATTACCCTCTCCGAG 58 8495364 8495382 CTTGAGCAGTCCAGATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acp29AB FBgn0015583 FBtr0079716 2 1 1 61 2L 8392867 8392885 CAAGATGAGACGATTCGAG 57 8392824 8392845 GCATTAGATTCTTCTCGATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Snoo FBgn0085450 FBtr0112719,FBtr0112721,FBtr0112718 2 3 5 109 2L 7975259 7975277 AATACCAGATCATCCTCGA 57 7896734 7896752 GTCATCCATGAGCATTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 Herp FBgn0031950 FBtr0079493 2 1 2 169 2L 7797722 7798170 ACTCTACGTTCTACGTTGC 59 7797571 7797590 TTAATCTGAGGATCAGCAGG 58 NA Drosophila melanogaster 50 CG7144 FBgn0025687 FBtr0079495 3 1 1 129 2L 7791868 7791948 ATCCTAGACGGTGAGATCC 59 7791757 7791778 CTTAATTTAGCCATCTGGAGGT 59 NA Drosophila melanogaster 50 Mnn1 FBgn0031885 FBtr0110978,FBtr0079401 1 2 3 83 2L 7059186 7060972 CACAAAGGAGGAGAAATCCA 59 7061018 7061036 TTGAGAATCTTCTCGCCAC 59 NA Drosophila melanogaster 50 Pcp FBgn0003046 FBtr0079388 1 1 1 60 2L 7022219 7022237 TTCAGGATCATACGATCCC 58 7022261 7022279 GTGAGGTAAATGGTCTTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Atac1 FBgn0031876 FBtr0079362 2 1 1 60 2L 6959762 6959780 CAGATTCGGGAAGATAGCG 59 6959720 6959739 ACGACTATACACTTGCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11322 FBgn0031856 FBtr0079387 2 1 1 60 2L 6758249 6758267 CTACGTTGCTACTACTGCC 59 6758207 6758226 ACATCTCTGACTTCCAAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GRHR FBgn0025595 FBtr0079308,FBtr0079310,FBtr0079309 1 3 3 96 2L 6713835 6714562 GTGTACAGCATACTGTTTGTG 59 6713759 6713777 TATCAATACGCAAGGGACC 59 NA Drosophila melanogaster 50 CG9147 FBgn0031774 FBtr0079190,FBtr0079189 2 2 2 150 2L 6067221 6067292 GGTACTTGAGAAGCTGGTG 59 6067406 6067424 GTAAACCTTCTCCAGACGG 59 NA Drosophila melanogaster 50 CG18266 FBgn0031724 FBtr0079109 2 1 1 61 2L 5597301 5597320 GAAAGTTGAGGATAAAGCGA 57 5597344 5597362 CATCGCCTTTGTTCATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hel25E FBgn0014189 FBtr0079123,FBtr0079125,FBtr0079124 3 3 3 84 2L 5539760 5539781 TACTTAACGAAGTACAGGATCG 59 5539635 5539717 CGTCCCTCAATGTATGTAGAG 59 NA Drosophila melanogaster 50 CG7382 FBgn0031708 FBtr0079130 1 1 1 189 2L 5519367 5519385 GTACAGGATGCAATTGGTG 58 5519141 5519214 GTTTACCAGAGTCACTCCT 58 NA Drosophila melanogaster 50 tkv FBgn0003716 FBtr0079089,FBtr0079087,FBtr0079088,FBtr0079086 2 4 4 228 2L 5221390 5221470 TTCTCATGTGCAAGGTAGC 59 5221180 5221198 AAACATAAGCTAGCCACGA 58 NA DesignRelaxed Drosophila melanogaster 50 qtc FBgn0028572 FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260 2 5 7 99 2L 5069212 5070107 CGCGTAAGACCATTTATCG 58 5070169 5070188 TAGAAGATAGCGCTCTTGAG 58 NA Drosophila melanogaster 50 CG9121 FBgn0031675 FBtr0079032 2 1 1 245 2L 5048821 5048839 CTCAGATCGAATTGCACAC 58 5048523 5048541 AAGATACCTTTCCTGCACC 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)05714 FBgn0010607 FBtr0079050,FBtr0079051 3 2 2 60 2L 4970475 4970494 ACAGAATGAAACAGATCTCC 57 4970434 4970453 GAGCTGTATCATCTCTTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gs1l FBgn0019982 FBtr0077453 3 1 2 286 2L 4456249 4456267 TTTGAGATCAAGGAGCAGG 59 4455606 4455624 ACCTTGTGGTTAAACAGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3513 FBgn0031559 FBtr0077549 1 1 1 242 2L 3693147 3693165 AAGTATATCGGCTTTGTCG 57 3692862 3692880 GCATTCACTCTTGGTAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdsw FBgn0021967 FBtr0077520,FBtr0077521 2 2 2 77 2L 3467051 3467139 GGTTCATCAAGTATGGCGA 59 3467180 3467198 AGATCAGACGATGCTTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG2772 FBgn0031533 FBtr0077516 1 1 1 175 2L 3447081 3447153 CTTAACCAGACTCTGCTCC 59 3447292 3447310 GTGAGATCATATGCCGGAG 59 NA Drosophila melanogaster 50 pgant2 FBgn0031530 FBtr0077592 2 1 1 83 2L 3406230 3406468 CTTCGGCAACATTGATGAC 59 3406165 3406186 GGATAGACATTCTCCAGATACC 59 NA Drosophila melanogaster 50 CG34394 FBgn0085423 FBtr0112641 2 1 4 126 2L 3363096 3363114 CATTGAGAAGAACACGTGG 58 3362708 3363006 CTGATTCATGCCTCTCCTC 59 NA Drosophila melanogaster 50 CG17224 FBgn0031489 FBtr0077672,FBtr0077671 1 2 2 80 2L 3017716 3017788 GATGTTAGGGTCATCTGCA 59 3017654 3017675 CACTACCAGGATATCTCTTAGG 58 NA Drosophila melanogaster 50 CG3515 FBgn0031431 FBtr0077750 1 1 1 60 2L 2552246 2552267 CCATGCAAAGACTATCAATAGG 58 2552207 2552225 ACTGATGAACACATTCTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 oaf FBgn0011818 FBtr0077777,FBtr0077779,FBtr0077778,FBtr0077780 2 4 4 104 2L 2495396 2495415 GTATTACCTCCAACATTGGC 58 2495482 2495582 GGATTTGAACCTCATTGCG 59 NA Drosophila melanogaster 50 CG14351 FBgn0031349 FBtr0077875 3 1 1 145 2L 1600689 1600707 TGCTACTCCCACTTATCCT 59 1600816 1600970 AAAGTCCACCTGATCACAC 59 NA Drosophila melanogaster 50 CG33923 FBgn0053923 FBtr0091927 3 1 1 156 2L 1341716 1341734 GATTGAATGGCTACAAGCC 58 1341510 1341596 ATGATATCGTGGTCGTAGG 58 NA Drosophila melanogaster 50 CG14339 FBgn0031301 FBtr0077954 2 1 1 90 2L 1110415 1110489 GACTTTGCGAATCTCTGTG 58 1110543 1110561 TATCGAAACCCTCGTTCTC 58 NA Drosophila melanogaster 50 ia2 FBgn0031294 FBtr0089789,FBtr0089790 3 2 2 81 2L 1014711 1014792 GTATCACATCTATGAGGTTCAC 58 1014651 1014671 GTTCTTCAGGTAGAAAGAACG 58 NA Drosophila melanogaster 50 CG13949 FBgn0031288 FBtr0078017 1 1 1 188 2L 855570 855588 CAACGACAAATACATGGCC 59 855803 855878 ATTTCCAGAGCCTTCAAGG 59 NA Drosophila melanogaster 50 CG4133 FBgn0031257 FBtr0078061 1 1 1 106 2L 457243 457261 TGAGTAAGCTGAAGAACCG 59 457328 457410 GTTCATTTCATCTTCCATCTCC 59 NA Drosophila melanogaster 50 Plc21C FBgn0004611 FBtr0078047,FBtr0078048,FBtr0078051,FBtr0078050,FBtr0078049 3 5 5 103 2L 344853 344871 GTCACTGGAGAGGTTATGC 59 344937 345017 CGTTTCATTCTGATCAGCTC 59 NA Drosophila melanogaster 50 CG11617 FBgn0031232 FBtr0078146 1 1 1 179 2L 205204 205281 ATATGACCAGGCAGAAAGC 59 205043 205061 TTTAGATATGGTGCCAGCG 59 NA Drosophila melanogaster 50 net FBgn0002931 FBtr0078162 1 1 1 60 2L 83310 83331 CTTAGAAGCTGTAACATCAACC 59 83271 83291 CTCGTCTTTCTTTCGTTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32512 FBgn0052512 FBtr0077262 3 1 1 136 X 20934436 20934840 CATTTGTCTCGGGACTCTC 59 20934318 20934336 ATACTTGGCATACACCACC 59 NA DesignRelaxed Drosophila melanogaster 50 obst-A FBgn0031097 FBtr0077334 2 1 1 185 X 20113182 20113200 CTGGTACAAGGATGTGGAC 59 20113349 20113367 ACTAAGACGCGAATCTGTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9576 FBgn0031091 FBtr0070027 3 1 1 218 X 20056014 20056032 GTGCAACAACACAGATGTG 59 20055750 20055768 AGGTAATGTGACGGATTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Nat1 FBgn0031020 FBtr0074711 3 1 1 133 X 19376302 19376320 TACGCCAACACTCATTGAG 59 19376416 19376501 ACTTCGAATTGATGTAGCGA 59 NA Drosophila melanogaster 50 CG6769 FBgn0030878 FBtr0074493 3 1 1 111 X 17756133 17756151 AACACATGATCGACAAGGG 59 17756226 17756317 ATGCCCTCATTATTGTCCG 59 NA Drosophila melanogaster 50 CG6398 FBgn0030870 FBtr0074462 3 1 1 84 X 17734948 17735029 TACCTGATGCCAGTTTACTC 59 17735076 17735094 AAGGTCCTGGGTAGATCTG 59 NA Drosophila melanogaster 50 Arpc3B FBgn0065032 FBtr0113478,FBtr0074410 1 2 2 60 X 16999552 16999572 GATGAGTCACTCTACTTCTGG 59 16999016 16999531 CCGACTTAACTTCGTAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9777 FBgn0030764 FBtr0074287 3 1 1 62 X 16525750 16525768 TTTATCGGAGAACAGGTGC 59 16525706 16525725 CTTGTTGCGAGAAATAAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32576 FBgn0052576 FBtr0100556,FBtr0074245 2 2 2 148 X 16182149 16182258 TATTCTATTCATATCGGGCCTG 59 16182022 16182040 TAATCATGCCGAAGATGGG 59 NA DesignNoJunction Drosophila melanogaster 50 PGRP-LE FBgn0030695 FBtr0074183 1 1 1 156 X 15695627 15695717 AGTGCTTCCACATTGAGTC 59 15695489 15695508 CATCCAATGAAACTGATCCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15645 FBgn0030657 FBtr0089702 3 1 2 284 X 15471783 15471846 AAGTCGTGTCCGATTTCAG 59 15471517 15471535 CTTGACCATTTGTTTCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9123 FBgn0030629 FBtr0074019 2 1 1 89 X 15235172 15235190 CTTCATTCTTGCACACGAG 59 15235007 15235119 ACTTTGATTTGACCAGCGA 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG9106 FBgn0030624 FBtr0074021,FBtr0074022 3 2 2 91 X 15165664 15165682 GTGATGGTAACGGTAGTGG 59 15165591 15165609 ATCGAACATCTCATGGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9509 FBgn0030594 FBtr0073978 3 1 1 60 X 14801228 14801248 TTGTTCTACTCTCACATCCTG 59 14801188 14801209 TTGGGATCTGTACTCTTTAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14408 FBgn0030581 FBtr0100150,FBtr0073990 1 2 4 238 X 14725645 14725663 ATCAACCGATACGAAGTGG 59 14725332 14725350 AGGTAGACCATCTCCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 tth FBgn0030502 FBtr0073849 2 1 1 60 X 13509759 13509777 CCAGATCTACACGTATCCG 59 13509717 13509735 CTTGCTCAAGTACTGACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2453 FBgn0030460 FBtr0073737 3 1 1 82 X 13087658 13087732 CATGTGGATAAGGTTCTTTCTG 59 13087597 13087615 GTCAGATGACTGAACTCCA 58 NA Drosophila melanogaster 50 CG10362 FBgn0030358 FBtr0073590 2 1 1 82 X 11823534 11823756 TAACGCTTAGGGTCAAACAG 59 11823471 11823490 GAAACTAATTGACCAGTGCG 59 NA Drosophila melanogaster 50 CG34348 FBgn0085377 FBtr0112557 2 1 1 136 X 11234653 11234671 TCTGGACTATTCGCTATGG 58 11234771 11237289 TTATTACCTGCCTGTGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 Yp2 FBgn0005391 FBtr0071424 1 1 1 79 X 9946440 9946458 CAACCTGAAGGAGGTTACC 59 9946311 9946397 GGTAGAGCTTGTCCAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33557 FBgn0053557 FBtr0091534 3 1 1 140 X 9903494 9903622 ATGTTAATTCGGCCTACGAG 59 9903724 9903800 ATTCAGTGCCTGTTTCTAGG 59 NA Drosophila melanogaster 50 nAcRalpha-7E FBgn0015519 FBtr0071177 3 1 1 84 X 8195919 8200688 ATGGATTTCAGGTGGATCTG 59 8195854 8195872 TAGAACTCGGACAGATCCA 59 NA Drosophila melanogaster 50 CG15330 FBgn0029987 FBtr0071099 1 1 1 62 X 7850387 7850405 AGATCAGACGCAATCATCC 59 7850428 7850449 CCAAGGTGTTATTATTGGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5937 FBgn0029834 FBtr0112952 2 1 2 170 X 5934814 5935631 CTTACGATAAGCTGTACCG 57 5936299 5936317 CGATGTAGAATCGTTCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 SK FBgn0029761 FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070765,FBtr0070767,FBtr0070769,FBtr0070766 3 7 7 81 X 5270146 5270164 GGAACAGATCTCATCTGGA 58 5270207 5272344 TTCCATATACCTAGGGTAGTC 57 NA Drosophila melanogaster 50 GlcAT-I FBgn0066114 FBtr0070644 3 1 1 64 X 4025518 4025600 AGCTAACCAGACTATCTCAC 58 4025627 4025645 GTCCTCCACAATGATCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ec FBgn0000542 FBtr0112801 1 1 3 156 X 3714992 3715010 AAGGGACTACTCAATGGAC 58 3735438 3745002 AAAGTTCCTTTAGAGCGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG10804 FBgn0029663 FBtr0070592,FBtr0114487 2 2 3 116 X 3373349 3373427 AATAGTGCTTCCGGAACAG 59 3373251 3373269 GATTCCCAGGGTAAAGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3191 FBgn0023525 FBtr0070417 1 1 1 109 X 2145307 2145325 CTCATCGAGGTGAACTACG 59 2145116 2145235 GGTAGAATGTCTGCGTAGTC 59 NA Drosophila melanogaster 50 CR41583 FBgn0085805 FBtr0114259 2 1 1 60 U 6962694 6962713 GACAAAGTGACTTAGTGCTG 58 6962653 6962672 CTAACAAGGACTTAGTAGCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41536 FBgn0085675 FBtr0114123 1 1 1 60 U 8007485 8007550 TTATCCCTATGGATCGATAGG 57 8007445 8007463 ATCTCGGTGTTCAGTACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40188 FBgn0058188 FBtr0113821,FBtr0113822 3 2 2 61 U 2232922 2232940 ATCTGCGCTATATCTCGTC 58 2232965 2232983 AACAACTGCATGCAATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32006 FBgn0052006 FBtr0089170 1 1 1 87 4 173539 173619 ACCAACACTCCCATTTCTG 59 173670 173688 TTGAATTTGAAGCCAGCAC 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-1295 FBgn0083055 FBtr0113584 3 1 1 60 3R 16648390 16648410 CTAGATAAAGTGCCAGAATCG 58 16648432 16648450 ATATTCCAGCTCTGCAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-291 FBgn0065064 FBtr0091755 3 1 1 63 3R 7049445 7049464 TATATTCCAGTAACGGTGCG 59 7049488 7049508 GTACGTGATATGGTTTAACCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ef1alpha100E FBgn0000557 FBtr0085834,FBtr0085835,FBtr0085833,FBtr0085832 2 4 4 186 3R 27567382 27567401 TCACCGAAGTAAAGTCTGTG 59 27567550 27567645 TTGAGCACAATCACCTGAG 59 NA Drosophila melanogaster 50 CG31019 FBgn0051019 FBtr0085665 2 1 1 81 3R 26424349 26424431 TACAACGAAGATGGCTATTACC 59 26424473 26424491 GCAGGATGTTAATGAAGCG 59 NA Drosophila melanogaster 50 CG15535 FBgn0039764 FBtr0085629 2 1 1 119 3R 26249272 26249290 GGAGAAAGTTAGAGCGGAC 59 26249171 26249189 ATGCGATCCTTCATCAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34133 FBgn0083969 FBtr0110887,FBtr0110888 1 2 2 81 3R 25697035 25697054 CATACAGAGCATGACATCAC 58 25697097 25697184 GCGATCTATGCTTATAGCAG 58 NA Drosophila melanogaster 50 CG1969 FBgn0039690 FBtr0085475,FBtr0085474 1 2 2 258 3R 25566141 25566308 GGAGGAGACATATCTGTACG 58 25566590 25566608 GACGGTGACAAAGTAGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Sirt7 FBgn0039631 FBtr0085364 3 1 1 123 3R 24882027 24882265 AAGGGTCTCGATGATACTG 58 24882352 24882370 GTATATCTCTACCCGCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1443 FBgn0039620 FBtr0085345 3 1 1 84 3R 24820572 24820667 TAACTTGAAGGCTCTCGTC 59 24820506 24820524 GGTGCCACTGTAGAATCTC 59 NA Nonspecific Drosophila melanogaster 50 CG9990 FBgn0039594 FBtr0085309,FBtr0085308 3 2 2 105 3R 24518604 24518622 ATCTACAAGTGCATCAGCC 59 24518690 24518874 GCAACGAGATGTTGTTACTG 59 NA Drosophila melanogaster 50 Sce FBgn0003330 FBtr0085245 2 1 1 60 3R 23506414 23506432 GTTGGTTATCCTGAATGGC 58 23506315 23506391 TACCTTCCAGAATTTGTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14259 FBgn0039483 FBtr0085104 3 1 1 138 3R 22920690 22920708 ATCCCATGAGAGTTAGGGA 58 22920810 22920952 AAGTCTTTCTTGCTCACAC 57 NA DesignNoJunction Drosophila melanogaster 50 Ets97D FBgn0004510 FBtr0085088 3 1 1 104 3R 22738303 22738322 AATGTTCGAGGATAGCATCG 59 22738157 22738236 ACAAGTGATTTGAGCATGC 59 NA Drosophila melanogaster 50 CG6478 FBgn0039436 FBtr0085057 1 1 1 131 3R 22449121 22449207 CATTGTCCTGTGTTTGGTG 59 22449008 22449026 CCTCCAATAGATCCACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL34a FBgn0039406 FBtr0084973,FBtr0084972 2 2 2 79 3R 21884404 21884422 ATCGAAGAGCAGAAGATCG 59 21884343 21884362 TTCTCCACAACCTTCTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5071 FBgn0039347 FBtr0084884,FBtr0084885 1 2 2 60 3R 21445457 21445475 CAGTACAAACAGCCAAAGC 59 21445496 21445517 CAATTCTCGAAGTCCATATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11859 FBgn0039306 FBtr0084816 3 1 1 74 3R 21092243 21092261 TTAATGGACCTCGTCAAGG 58 21092350 21092369 ATCATCGTAAACTTGTGGAG 57 NA DesignNoJunction Drosophila melanogaster 50 Esp FBgn0013953 FBtr0084703 1 1 1 264 3R 20673094 20673950 TATACTCACTGAAGACGGC 58 20674178 20674266 ATACAAGCCATAGGCTACG 58 NA DesignRelaxed Drosophila melanogaster 50 CG6631 FBgn0039206 FBtr0084645 2 1 2 82 3R 20358455 20358474 GGATTGTGCTGAATTAACGG 59 20358516 20358593 GTATAATGTTAGCATCGGTTGG 59 NA Drosophila melanogaster 50 Rpn9 FBgn0028691 FBtr0084469,FBtr0084470 1 2 2 80 3R 19557825 19557843 TTCTTGAGTCGCTTAAGGG 59 19557702 19557781 ACTTGTTAATATCGCCCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG17381 FBgn0039079 FBtr0084415 2 1 1 60 3R 19310801 19310821 CCTTTAATACATCCTACGGCT 59 19310843 19310861 TGCTCCTCGTAAATCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6921 FBgn0038985 FBtr0084262,FBtr0084261 2 2 3 86 3R 18380434 18380453 ATAAAGATTGTCGAGGAGCG 59 18380566 18380585 CATAGGTGAGCTCATTAGGA 58 NA DesignNoJunction Drosophila melanogaster 50 CG5379 FBgn0038956 FBtr0084235 1 1 1 161 3R 18213228 18213246 ATACCCAAATTGTGGTGGA 58 18213028 18213105 GGAACCTTAAATTCCACTGTG 59 NA Drosophila melanogaster 50 Synd FBgn0053094 FBtr0083966 2 1 1 97 3R 16664080 16664098 GATCAACAATGCAGACCAG 58 16664156 16664244 CCGTATATTCCACAAATGATGG 59 NA Drosophila melanogaster 50 KaiRIA FBgn0028422 FBtr0083938 2 1 1 80 3R 16475948 16476024 TTCATGAATTTGGGCATAGC 58 16475887 16475905 AAATGGGTCCATGAAGGAG 59 NA Drosophila melanogaster 50 Pi3K92E FBgn0015279 FBtr0083940,FBtr0083941 3 2 2 85 3R 16457026 16457248 GTGCTTACACTTTCTGAAAGAC 59 16456962 16456980 TTTCCAGGTACGATTCGTG 59 NA Drosophila melanogaster 50 GluClalpha FBgn0024963 FBtr0100128,FBtr0083788,FBtr0083787,FBtr0100127 3 4 4 110 3R 15578394 15579482 GCTTCACTAGCAAATAATGCC 59 15579552 15579572 TATTCCAGATGGTCGTATTCG 59 NA Drosophila melanogaster 50 gukh FBgn0026239 FBtr0089767 3 1 4 150 3R 14839139 14839157 CGATCAGAAGGAGATCCAG 58 14846750 14846768 TGCAGTGTCCAATAGATGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14318 FBgn0038544 FBtr0083530 2 1 1 122 3R 13608133 13608154 GTGACTGCGAATGTTATAAACC 59 13606482 13606501 GGTATTACGTCGTTTCTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG14898 FBgn0038437 FBtr0083308 1 1 1 60 3R 12307830 12307850 ACAGCTCTTTATGACAGAGTG 59 12307734 12307752 AATCCCTAGTTGTTGGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Mst89B FBgn0020399 FBtr0083260 2 1 1 134 3R 12093123 12093141 TTTGGATGATCTTCTCCGC 59 12093314 12093332 TAGCAAAGTGGTAAACGGT 59 NA DesignNoJunction Drosophila melanogaster 50 trx FBgn0003862 FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949 2 5 5 82 3R 10091189 10091209 TATGTTGGAGTCTTCAGATCC 58 10091050 10091145 TCGATAACCATTTCACCCG 59 NA Drosophila melanogaster 50 CG14359 FBgn0040559 FBtr0082893 2 1 1 92 3R 9978182 9978200 GTGTCCTACAGGAACATGG 59 9978255 9978274 ATGAAGTTCTTTGCTCTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 140up FBgn0010340 FBtr0082909 1 1 1 74 3R 9950582 9950662 TTACCACATCCTACTTCGG 58 9950526 9950546 CCAAGTATTCGTAGATTGAGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG9922 FBgn0038196 FBtr0082870 1 1 1 185 3R 9861389 9861548 CAGATTTGGAACGTGTGAC 59 9860988 9861171 GCAGCTCGTTCATAATCAG 58 NA Drosophila melanogaster 50 Hsp70Bc FBgn0013279 FBtr0082638 1 1 1 60 3R 8336531 8336550 AACATCACGATCAAGAACGA 59 8336573 8336591 TCACCATGCGATCAATCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 trus FBgn0038055 FBtr0082634 3 1 1 191 3R 8283439 8283457 CAGGAGTACAAGCTGAGAG 59 8283612 8283689 CGTATCCCGCGAATATCTC 59 NA Drosophila melanogaster 50 Pp1-87B FBgn0004103 FBtr0082595 1 1 1 60 3R 8251194 8251212 TACTACGATCTGTTGCGTC 59 8251152 8251170 ACAGGTAATTCGATTCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4848 FBgn0037998 FBtr0082624 3 1 1 124 3R 8042636 8042654 AAGAGTTACTAGCGCAGAG 58 8041603 8041621 ATTTGGATTTGCTGCTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 dpr17 FBgn0051361 FBtr0082543,FBtr0082542 3 2 2 100 3R 7936142 7936161 AGATTAGCGATAGTGACGAG 58 7936224 7936318 AATTAATGAGCCGATCGTG 57 NA Drosophila melanogaster 50 CG3532 FBgn0037979 FBtr0113224 2 1 1 91 3R 7840084 7840102 GTTCCCGTGCTAAATACCA 59 7840156 7840238 CCATCTGCAGAAACTTTCTG 59 NA Drosophila melanogaster 50 CG31116 FBgn0051116 FBtr0082527,FBtr0082528,FBtr0113390,FBtr0082526,FBtr0113391 1 5 5 80 3R 7626255 7626326 TTGCTTTGATTGGACTTGTG 59 7626194 7626215 ATCTCATGAAGAGGACATATCG 59 NA Drosophila melanogaster 50 CG14714 FBgn0037929 FBtr0082422,FBtr0113222 3 2 3 108 3R 7498790 7498808 CAGCCACGAGATTAATGGA 59 7498982 7499001 TATAATGGTACCGGTTCGTC 58 NA DesignNoJunction Drosophila melanogaster 50 ninaG FBgn0037896 FBtr0082404 1 1 1 83 3R 7247094 7247191 TTGACTACGTGATTGTGGG 59 7247029 7247047 GAAGAACACTCCCATTGCT 59 NA Drosophila melanogaster 50 scpr-A FBgn0037889 FBtr0082357 1 1 1 60 3R 7066936 7066956 CTCCAATTGATTCTCCTAGCT 59 7066978 7066996 GGAGAGCACAATAGTCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED7 FBgn0051390 FBtr0082311 2 1 1 205 3R 6586246 6586326 GATTGACGATATCAGTCTGC 58 6586060 6586078 CATCATCTAGAACCGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rlc1 FBgn0014023 FBtr0082121 3 1 2 77 3R 5340821 5340842 CTTAAAGTACAGGGAGAAACTC 58 5340712 5340730 AGGATCATCATGACTTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG8129 FBgn0037684 FBtr0082026,FBtr0082027 1 2 2 119 3R 5192794 5192813 AGTGGCTATCCTAAGATTGG 58 5192895 5192977 ACCACAACTTTCTTTCCCT 58 NA Drosophila melanogaster 50 CG8866 FBgn0037679 FBtr0082056,FBtr0082055 1 2 2 81 3R 5158579 5158659 ACAGCTATATGCCCTTTCG 59 5158516 5158535 GTAGAGGTATAGCTCACCCT 59 NA Drosophila melanogaster 50 CG11964 FBgn0037644 FBtr0082015 2 1 1 80 3R 4768859 4768939 AGCATAATGAGGGAATACGC 59 4768798 4768819 AGATAATATGTGGTTCTGCTCC 59 NA Drosophila melanogaster 50 CG9731 FBgn0037640 FBtr0081929 2 1 1 62 3R 4688228 4688246 GAATTCCCTCAGCAATTCG 58 4688184 4688202 TATATGAACCTTGGGTGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11737 FBgn0037592 FBtr0081869 1 1 1 80 3R 4346202 4346221 GAAGATGATCTTCAACCGTG 58 4346263 4346336 CAGGACACCGACTTATAGAG 58 NA Drosophila melanogaster 50 CG1239 FBgn0037368 FBtr0078720 1 1 1 176 3R 1560031 1560049 TAATTTCTGTGATTCCGGC 57 1560258 1560276 GTGAAATGATCAGGTCGGA 59 NA DesignNoJunction Drosophila melanogaster 50 Pcmt FBgn0086768 FBtr0078758 1 1 1 80 3R 1378764 1379007 CAGTACATGCAACAGTACG 58 1378702 1378720 GAGAGGGACGTACATTACG 59 NA Drosophila melanogaster 50 CG12173 FBgn0037305 FBtr0078821 2 1 1 117 3R 1081337 1081417 GGATATTCCAGGAGAAGCG 59 1081238 1081256 CGGAATCAACTCGAATCCA 59 NA Drosophila melanogaster 50 cno FBgn0000340 FBtr0078832,FBtr0078833 1 2 2 88 3R 1007198 1007281 CATCAGTTTAATGCTCGCAG 59 1007129 1007147 TTGCTGTTCTTGTGTAGCT 59 NA Drosophila melanogaster 50 CG12582 FBgn0037215 FBtr0078964 2 1 2 123 3R 23485 23503 CCCTTGGGCATATACAGTG 59 23590 23995 AGTGATGAACGTCGAACTG 59 NA Drosophila melanogaster 50 CR41184 FBgn0084048 FBtr0111303 1 1 1 65 3L 22977814 22977832 AATACAAACCAGTAGGCAC 57 22977861 22977879 TATGAACAGTTCATGGCCA 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR15821 FBgn0035311 FBtr0072914 1 1 1 63 3L 2172118 2172189 AAATTGGGAATGGCTTCAG 58 2172073 2172091 TGATCCGCCTATCTATGGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG41457 FBgn0084019 FBtr0111149 3 1 1 76 3L 23453246 23453264 AGATGCGGAAGACTTTGTC 59 23453188 23453208 TAGAGCTTTCAGAATTCCGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14454 FBgn0037177 FBtr0078542 1 1 1 295 3L 22685523 22685541 CACATCTACATCCTCGACG 59 22685246 22685264 CCACTTATCCCTGAAGCTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7407 FBgn0037134 FBtr0078440 2 1 1 84 3L 21816954 21816972 TGAGCTAATCGAGGAACAG 58 21817020 21817038 CATCTTATGCTGGAGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32436 FBgn0052436 FBtr0078343 1 1 1 83 3L 21343555 21343661 CGTTTGCAGTACTATTATCGG 58 21343706 21343724 GAAATCGGGATTCAAACGA 58 NA Drosophila melanogaster 50 CG4074 FBgn0037017 FBtr0078280 2 1 1 60 3L 20762322 20762342 CGATGCTTTCTATAACTCGGT 59 20762282 20762302 AGATAACTCCAGGCTATTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32210 FBgn0052210 FBtr0074974 1 1 1 81 3L 19543183 19543202 GATCGTGTTTGAAATCCTGC 59 19543063 19543140 TTGTGGAAGCTTCATGAGAG 59 NA Drosophila melanogaster 50 CG6841 FBgn0036828 FBtr0075068 3 1 1 120 3L 18901204 18901222 GGATGCTCTCAAGAAATGC 58 18901306 18901397 ATCGATCTTGACAGTTCGA 58 NA Drosophila melanogaster 50 CG4174 FBgn0036793 FBtr0100566,FBtr0100567,FBtr0075111 2 3 3 67 3L 18594403 18594421 AAACTTTGGAACTACCCGA 58 18594292 18594372 AAATAGTGACCAAGTCCCT 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 mRpS26 FBgn0036774 FBtr0075121 2 1 1 87 3L 18100362 18100383 TCCAAGAACTATATCACTAGGG 58 18100431 18100449 TATCGATGGCGAAATTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3764 FBgn0036684 FBtr0075297 3 1 1 81 3L 16988830 16988848 ATGTCTCAGCTAGTGTCCA 59 16988706 16988785 ACGACAAACACTCATAGGC 59 NA Drosophila melanogaster 50 Su(P) FBgn0004465 FBtr0075359 1 1 1 99 3L 16604062 16604080 AAGTCTGGCTGATCTATCG 58 16603919 16603999 AAACCATTTACCGATGCTG 58 NA Drosophila melanogaster 50 DNApol-delta FBgn0012066 FBtr0075522 2 1 1 60 3L 15979984 15980003 AATAAGGAACAGTCACAGCA 59 15979943 15979961 CACGTCTACTTCAATCTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eig71Ek FBgn0014851 FBtr0075575 1 1 1 119 3L 15654551 15654572 GAATAGGACGATTTGATGAGAC 58 15654652 15654726 AAATCAGAAGACAGGTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7255 FBgn0036493 FBtr0110881,FBtr0100360 3 2 3 145 3L 15301806 15301827 GCTCGTCGTAGATTATTTAGAG 58 15301932 15302036 AGAAATACGGGTATACCCAC 58 NA Drosophila melanogaster 50 CG13457 FBgn0036482 FBtr0075654,FBtr0075653 3 2 2 78 3L 15121464 15121483 GATTATACGGGACCTAGCTC 58 15121300 15121318 CATCATCGTAGGTGGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7257 FBgn0036224 FBtr0076040 3 1 1 113 3L 11935816 11935906 TTGAAGGTCGTTTCCTCTG 59 11935980 11936001 GTCCATGAATATGATACATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7551 FBgn0036161 FBtr0076176 3 1 1 60 3L 11452199 11452217 CGATAACAACCTGGATGAC 57 11452240 11452259 AGAGAATACGGCATAGTCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32063 FBgn0045770 FBtr0076286,FBtr0076287 1 2 2 60 3L 10460033 10460054 CCCGATCATTACAAAGTATTGG 59 10460073 10460093 TCGGCATAGTCCATATTATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32053 FBgn0052053 FBtr0076315 1 1 1 165 3L 10084474 10084627 CATTAATGGAGTTCTGTTCGC 59 10084329 10084347 TAGAACACCGACAGTTCAC 59 NA Drosophila melanogaster 50 CG4452 FBgn0035981 FBtr0089493,FBtr0089494,FBtr0089495 2 3 3 184 3L 9361223 9361241 AAGTGCGAACATTATCTGG 57 9362075 9362093 CTTGGACATCGGTATACGG 59 NA DesignNoJunction Drosophila melanogaster 50 Lcp65Aa FBgn0020645 FBtr0076995 1 1 1 78 3L 6144435 6144453 GAAATCCATCCTTGTGCTC 58 6144495 6144513 GTCAACAATCTCTGCATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sucb FBgn0029118 FBtr0077135 1 1 2 243 3L 5556489 5556604 ATCGTTCATAAGGTTCCCG 59 5556183 5556201 ACTTGGTGGTGATATGGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10671 FBgn0035586 FBtr0077178,FBtr0077177 2 2 2 60 3L 5138607 5138628 ACCATATTCTTCAATACGGACC 59 5138568 5138586 AGATCACAAACAGACTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL8 FBgn0024939 FBtr0072924,FBtr0072925 2 2 2 189 3L 2588587 2588605 TAACCATCAGCACATTGGT 59 2588758 2588776 ACCACTACCCAGATCTCAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG3386 FBgn0035152 FBtr0072611 1 1 1 133 3L 681448 681466 CATGGGATTTCTCCTCACC 59 681271 681289 TTTCCGTGTTGAGATCTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6905 FBgn0035136 FBtr0072569 2 1 1 62 3L 360685 360764 GCTATGAGTACTTGCTAGACC 59 360643 360661 GATCATCCATCGTGTCCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG7028 FBgn0027587 FBtr0072528 3 1 1 90 3L 209364 209457 ATTTCGATTCACCCAACAC 58 209292 209310 TAATAACCTTCAGCGTCGT 58 NA Drosophila melanogaster 50 mri FBgn0035107 FBtr0072481,FBtr0072480,FBtr0072482 2 3 3 165 3L 201608 201626 ATCTACAGCTATGTGCAGC 59 201755 201831 GAATCGGATTTCCACTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 snoRNA:Psi18S-1347c FBgn0086600 FBtr0091610 1 1 1 90 2R 14030730 14030751 GACTAAGATTCATAGTTGCCAG 58 14030802 14030820 TCTTCAACTTCTGCACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-1347a FBgn0083054 FBtr0113513 3 1 1 60 2R 14030353 14030374 GACTAAGATTCAATGTTGCCAG 59 14030393 14030413 ATAGATCAGCCATCTACATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR14499 FBgn0034317 FBtr0086751 3 1 1 60 2R 14075374 14075393 AAGAACTTCTTCGGATCGTC 59 14075415 14075434 ATTGCTAAAGCTCAGAAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33443 FBgn0053443 FBtr0086435 1 1 1 61 2R 15620526 15620544 AATACATCGGTTCTCGTCC 59 15620483 15620501 TATAAGTACTAACCGCGCC 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33447 FBgn0053447 FBtr0086439 1 1 1 62 2R 15619009 15619027 AATACATCGGTTCTCGTCC 59 15618965 15618983 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR30370 FBgn0063356 FBtr0088797 3 1 1 111 2R 4153736 4153811 ACGTTCTGATATGAGAGCT 57 4153885 4153904 TAAATGACATAGCCTTGCTC 57 NA Drosophila melanogaster 50 uzip FBgn0004055 FBtr0072397 3 1 1 107 2R 20915916 20915934 TTTAGTCGAAACAGAGCCC 59 20916004 20916080 TCAAGCTTCCTAGTAACCAG 58 NA Drosophila melanogaster 50 CG30412 FBgn0050412 FBtr0072044,FBtr0072043 2 2 2 73 2R 19206418 19206436 TTTACGGACTTCGTAAGGC 59 19206363 19206382 ATCTGCTTGAAACCCATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30195 FBgn0050195 FBtr0071931 1 1 1 60 2R 18534327 18534345 TATGACCCTGAAGACACGA 59 18534285 18534303 TTTCTCCCTGGATTTCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gom FBgn0029084 FBtr0071766 1 1 1 92 2R 18028018 18028036 AAGAACAGCCGCTATAACC 59 18028092 18028159 TAGACAGAGGACACCTGAC 59 NA Drosophila melanogaster 50 CG11475 FBgn0034687 FBtr0071803 2 1 1 60 2R 17957786 17957805 TTCCATGTGAAGGCTATACC 59 17957745 17957763 GCCAGTTAAAGTCCTTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hbn FBgn0008636 FBtr0071556 2 1 1 125 2R 16845887 16846055 TAAAGTTCGAAGATCTCGCA 59 16845781 16845799 CTCAAATCCAATCGCATGG 59 NA Drosophila melanogaster 50 CG9235 FBgn0034560 FBtr0071517 3 1 1 61 2R 16798008 16798027 CCACTTAGCTACCTCATGTC 59 16798049 16798069 GTTAGGGATCCATTGTAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33454 FBgn0053454 FBtr0086565 3 1 1 174 2R 15138877 15138896 ATTTCAGATGCTGAAGAGGG 59 15138661 15138740 GTTAAGTACCACCGTACCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG15096 FBgn0034394 FBtr0086633,FBtr0086632 2 2 2 112 2R 14697626 14697644 TATTCTTTGCCCTTACGGT 58 14697466 14697550 CGACCAATTATACTCGGGA 58 NA Drosophila melanogaster 50 CG10911 FBgn0034295 FBtr0086808 1 1 1 60 2R 13941271 13941289 TTGGAAACAGCTAGTCAGG 59 13941229 13941247 CATCTCGTTCTTCCTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6522 FBgn0034223 FBtr0086954 1 1 1 170 2R 13354509 13354589 TCTGGCAAGAATTCCACTC 59 13354357 13354375 GAAGAAGTAGACCAGGTCG 59 NA Drosophila melanogaster 50 CG9646 FBgn0034184 FBtr0086974 2 1 1 91 2R 12937673 12937749 AATTTGAGACTGAGGTGGAG 59 12937803 12937821 GAGATAAACCGTCTCCTCC 58 NA Drosophila melanogaster 50 CG6426 FBgn0034162 FBtr0087042 1 1 1 248 2R 12757095 12758780 ATTCAAGCTCAGGATAAGC 57 12759061 12759080 CTTGGTCATGTAATTCTGGA 57 NA DesignNoJunction Drosophila melanogaster 50 spin FBgn0086676 FBtr0089593,FBtr0089589,FBtr0089592,FBtr0089590,FBtr0089591 1 5 5 95 2R 12019320 12019339 TTATCTCGGATCTGTTCGTG 59 12019397 12019824 CCACAATGTATCCCAGACC 59 NA Drosophila melanogaster 50 Cdk5 FBgn0013762 FBtr0087350 1 1 1 161 2R 11458514 11458532 ACTCGGACAAGAAACTCAC 59 11458211 11458389 GATGCAGGACATTATGGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG12963 FBgn0034031 FBtr0087337 2 1 4 91 2R 11444237 11444255 CAAGTTGAAGATCGACGAG 58 11444310 11449328 CATTACGATCTTCCATGGC 58 NA Drosophila melanogaster 50 eIF2B-gamma FBgn0034029 FBtr0087336 2 1 1 145 2R 11430956 11431030 CGATTATCTACGAAGGAAGG 57 11431138 11431156 GATCCTCATTCTTGGTGAC 57 NA Drosophila melanogaster 50 kn FBgn0001319 FBtr0112810 1 1 3 99 2R 10681341 10685773 GTTGACCAGAGCAATTTGG 59 10681260 10681278 ATAAGGCGATCACGAAGTG 59 NA Drosophila melanogaster 50 CG30480 FBgn0050480 FBtr0087478 2 1 1 60 2R 10564876 10564895 GCCTACAGGTTATATTCCCA 58 10564835 10564856 GACATTCTCGACAATAGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8494 FBgn0033916 FBtr0087535 2 1 1 95 2R 10130374 10130483 GAGCTAAAGGAAACTACAATGC 59 10130539 10130557 GAAATGCAACAGTTCGGTC 59 NA Drosophila melanogaster 50 CG13016 FBgn0033899 FBtr0087519 2 1 1 107 2R 10045931 10046006 CTTCTTATTCTATCCTGTGGTC 57 10046073 10046092 GGTAGGTCGTTGATATACAC 57 NA Drosophila melanogaster 50 CG16935 FBgn0033883 FBtr0087622 2 1 1 99 2R 9748785 9749141 CATTCAGGGTAAATACCCG 57 9748704 9748722 AAAGCCTTTGACTTTGTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp301a1 FBgn0033753 FBtr0087824 3 1 1 82 2R 8455545 8455566 CCTATTGGAGATACTTTCCCAC 59 8455609 8455684 GTACTTCATGCAGACACCA 59 NA Drosophila melanogaster 50 CG30203 FBgn0050203 FBtr0087894 1 1 1 80 2R 8201009 8201029 ATATAAGCAAACAGGAGGTGG 59 8201071 8201179 TAGGATCTACCTCCTGCTG 59 NA Drosophila melanogaster 50 CG12367 FBgn0033686 FBtr0087984 2 1 1 131 2R 8039030 8039137 ATTGAACTAATCGAGCACG 57 8039231 8039250 GAACCGCGTAAATATAACGT 58 NA Drosophila melanogaster 50 Syx6 FBgn0037084 FBtr0088104,FBtr0088103,FBtr0088102 2 3 3 78 2R 7109104 7109122 AAAGTTGCCAAAGTCTTGC 59 7109317 7109336 ACAATAACAGTCCGGATAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG12134 FBgn0033471 FBtr0088388 2 1 2 187 2R 5859908 5859926 GGAGGAGTCTTTCTGTTGG 59 5860134 5860152 GTAACAATGCCGGATTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 Mef2 FBgn0011656 FBtr0088444,FBtr0088443,FBtr0088442,FBtr0088447,FBtr0088445,FBtr0088446 2 6 6 68 2R 5808060 5808078 GTACACCGAGTACAACGAG 59 5807239 5808028 TTCTTGTTCTCCTTCTCGA 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Uba1 FBgn0023143 FBtr0088499 2 1 1 95 2R 5577416 5577497 ATTCCATCAAGAAAGCTCTG 57 5577340 5577360 GGTTAACATATTGATCCTCCC 57 NA Drosophila melanogaster 50 CG1941 FBgn0033214 FBtr0088927 1 1 1 80 2R 3599167 3599251 GCATTGTCCAAGTTGTTGG 59 3599292 3599313 TGTGTATCTTATCCACATAGGC 59 NA Drosophila melanogaster 50 gus FBgn0026238 FBtr0089753 1 1 6 137 2R 1009144 1009285 ATGTCTATGTATAAGGGTGGTC 58 1009028 1009046 AAGACGTTCAAACTCCCTC 59 NA Drosophila melanogaster 50 CG40282 FBgn0039979 FBtr0111272 2 1 1 171 2R 618641 618659 AATCAAGCGAATCAGAACG 58 618488 618506 GACCACTTCCCTGAATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17715 FBgn0041004 FBtr0111248,FBtr0111244,FBtr0111249,FBtr0111247,FBtr0111245,FBtr0111246 3 6 6 148 2L 22742091 22742164 ATAATGATCATGGCGGGTG 59 22742275 22742294 AATATCTGGCACCCATTCTC 59 NA Drosophila melanogaster 50 Acon FBgn0010100 FBtr0081473,FBtr0112855 1 2 2 95 2L 21172390 21172469 TACGATAAGATCCAGCCCA 59 21172528 21172546 GTCGCCATTCTTGATTTCG 59 NA Drosophila melanogaster 50 CG12617 FBgn0040996 FBtr0081351 2 1 1 60 2L 20294906 20294925 CAAACATCTGAACGAGATGG 58 20294947 20294966 AATATAGTTCCGACCCATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10165 FBgn0032801 FBtr0081278,FBtr0081277 2 2 2 109 2L 19528164 19528182 TTCTGATCTTTCTGGTGGC 59 19527939 19528092 GATAAGGACGTGGAATCCAG 59 NA Drosophila melanogaster 50 CG10495 FBgn0032750 FBtr0081150 3 1 1 100 2L 19063469 19063548 ATGGTGCGCTATAGTAAGC 59 19063610 19063630 CTGTTGTTAATGGAGTCTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10600 FBgn0032717 FBtr0081120 3 1 1 122 2L 18838602 18838620 CTCCAAATCCTCCAAGGAG 59 18838148 18838516 GAGGAAGGAATCTTCTCCC 58 NA Drosophila melanogaster 50 CG10333 FBgn0032690 FBtr0081072 3 1 1 60 2L 18608207 18608225 CATTATCGACAAAGTGGGC 58 18608249 18608267 AATGGGTATAGCTTGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31742 FBgn0051742 FBtr0081025 3 1 1 60 2L 17991185 17991204 TGCAGTATATCATGCTACCA 58 17991226 17991245 GTGATATAGTCTCACCACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5110 FBgn0032642 FBtr0080983 3 1 1 60 2L 17481471 17481491 CGTTATTCAGATTACGGATCG 58 17481513 17481531 GTTCTTCTCCTGGCTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr36c FBgn0045485 FBtr0080964 1 1 1 94 2L 17181338 17181356 ACGTACAGGATGACTACTG 58 17181414 17181488 GTTCTCAAAGGCTTCTTCG 58 NA Drosophila melanogaster 50 CG8942 FBgn0028545 FBtr0080615 2 1 1 110 2L 13975875 13976491 TATACAGACGAAGAGACTGC 58 13975784 13975802 TTGAGGACACTGTTGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sop2 FBgn0001961 FBtr0080570,FBtr0080569 3 2 2 60 2L 13828455 13828473 GATAAGTCGCAGAAGAAGG 57 13828413 13828432 CCATCGACTGAAAGATTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9306 FBgn0032511 FBtr0080472 1 1 1 74 2L 13370420 13370438 AGAAGGAGTTTGTGACCTG 59 13370364 13370382 AAGATTAGTGGTGTCCCAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG5204 FBgn0032473 FBtr0080433 1 1 1 81 2L 13162316 13162334 CTGATCTCAGTTATTGCGG 57 13162436 13162454 AAATCTTCGGGTTCCTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Vha68-2 FBgn0020367 FBtr0080419,FBtr0080420,FBtr0080418 2 3 3 103 2L 12977895 12977980 TCCATGAAGTTCAAGGACC 59 12978047 12978065 TCCTCCAGATTTCTGAAGG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Elf FBgn0020443 FBtr0080369 1 1 1 80 2L 12439161 12439179 ATCAATTATCTGTGCGGGT 59 12439223 12439306 CAGATGAGGGCCTTAACTG 59 NA Drosophila melanogaster 50 CG17211 FBgn0032414 FBtr0080336 2 1 1 109 2L 12125889 12125969 TACTGCTATTGCATAGGTGG 59 12126041 12126059 TATCTTACGGGACAACAGG 58 NA Drosophila melanogaster 50 Patsas FBgn0029137 FBtr0080363,FBtr0080362 2 2 2 60 2L 12101695 12101713 TACTTTGACCACCACTGTC 59 12101653 12101671 ACCACATTCTGTTCCTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33305 FBgn0032351 FBtr0080221 2 1 1 60 2L 11159713 11159882 CATGTCCAGACCTTTAGGTC 59 11159672 11159690 CACGGGTGCTCTATTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 aub FBgn0000146 FBtr0112793,FBtr0080165 2 2 2 83 2L 10999440 10999525 GACTTTAGGACGTTGAGGG 59 10999375 10999393 CTTGTTGAACATGCGAAGG 59 NA Drosophila melanogaster 50 CG17124 FBgn0032297 FBtr0080118,FBtr0080117 2 2 2 98 2L 10745672 10745690 ACATCGACGAGATACTGGA 59 10745529 10745547 TCGATATGTCTGATTGCGG 59 NA DesignNoJunction Drosophila melanogaster 50 Sur FBgn0028675 FBtr0079963 2 1 1 80 2L 10194421 10194439 TGCATTGTGATAATGACGC 58 10194305 10194379 GGTATATCCCGCTATAACCTC 59 NA Drosophila melanogaster 50 CG14535 FBgn0031955 FBtr0079564 2 1 1 119 2L 7847887 7847905 GCACATCCTCTATCAGCTC 59 7847646 7847805 CAGCTGATCAAATTGTTGTC 57 NA DesignNoJunction Drosophila melanogaster 50 Ucp4C FBgn0031757 FBtr0079172 3 1 1 61 2L 5968951 5968969 GAGTGGAGGGATTCAAGTC 59 5968994 5969012 GATAAAGTTTCGGGTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF-3p40 FBgn0022023 FBtr0079031,FBtr0079030 3 2 2 174 2L 5051568 5051652 CTTCAAGCAGGATACGGAG 59 5051412 5051430 GGTATTGATCTGGCCAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 BG642163 FBgn0083938 FBtr0110769 1 1 1 63 2L 4641341 4641359 TATTATCAGTGGTGCAAGC 57 4641386 4641462 TGGGAAGTTGTTCTTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dp FBgn0053196 FBtr0089286 1 1 1 80 2L 4500453 4500474 CTTACCAACTTGTCATTGTCAG 59 4500330 4500412 TTAAGGACAGGTTTCTCGG 58 NA Drosophila melanogaster 50 CG2862 FBgn0031459 FBtr0077718,FBtr0077719 3 2 2 67 2L 2770391 2770468 GGATGATAAATGCGTTGCC 59 2770499 2770517 GAGGAATCACGAGGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9867 FBgn0031421 FBtr0077767 3 1 1 159 2L 2382548 2382622 TTTCCTATGAAAGGCTCCC 58 2382744 2382763 TTGTAGCAATTCGGATCCTC 59 NA Drosophila melanogaster 50 CG17012 FBgn0031406 FBtr0077804 3 1 1 62 2L 2254478 2254497 GTGTTCAATGAGGACATCTG 58 2254435 2254453 ACCGGAATCTCCATAACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12674 FBgn0031388 FBtr0077827 3 1 1 121 2L 2080948 2080966 GTGAGGGTTACATACTCCG 59 2081049 2081134 CTTCAGCAGAAACTTGTTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Plap FBgn0024314 FBtr0077980 2 1 1 68 2L 1168709 1168728 TTAATGAGGAGATTGGTGGC 59 1168604 1168622 TTCCATTGGACAGAAGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 S FBgn0003310 FBtr0077993,FBtr0077994 1 2 2 111 2L 1052484 1052575 TCCCAAAGAGATTACCATACAC 59 1052394 1052412 CATGATTGTGTAGAGCGGA 59 NA Drosophila melanogaster 50 Ent1 FBgn0031250 FBtr0078095 3 1 2 81 2L 357475 357493 CCTACCTCGTGTTCTACCT 59 357181 357431 TACTTCCAGTAATCTTCCGC 59 NA Drosophila melanogaster 50 mt:tRNA:P FBgn0013702 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG6361 FBgn0030925 FBtr0074630,FBtr0113000 1 2 2 254 X 18374512 18374587 ATGAATGTGACCAATCGTG 58 18374276 18374294 GATTACGCCTACGATCGAG 59 NA DesignRelaxed Drosophila melanogaster 50 Dhc16F FBgn0013809 FBtr0074509 2 1 1 80 X 17959720 17959795 AAGACGATATTTCGAGCCT 58 17959837 17959857 CGATGGATAGTAGTTGACCTC 59 NA Drosophila melanogaster 50 r FBgn0003189 FBtr0089734 1 1 2 161 X 16554458 16554476 TTCCAGATACCCAAGAACG 58 16554665 16559229 GGATTCCACATTAACTCCGT 59 NA Drosophila melanogaster 50 CG12507 FBgn0030729 FBtr0074248 3 1 1 60 X 16160071 16160089 TACGATCCCTATATTCGCC 58 16159829 16159850 GTGGATAGTTCCTATGGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15028 FBgn0030618 FBtr0112985 3 1 2 60 X 15075467 15075487 TCTATGGGCCTCATTATTGTC 59 15075508 15075527 TAGCGCAGTACATAGATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CkIIbeta FBgn0000259 FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559 1 5 6 162 X 11689033 11689147 TGTTCCAAGGCTATATGGA 57 11689687 11689705 TTGTATTCGTGCGTATGTG 58 NA InUTR Drosophila melanogaster 50 Kap3 FBgn0028421 FBtr0112931,FBtr0112934,FBtr0112933,FBtr0112932,FBtr0073459 1 5 5 80 X 11231087 11231171 GTGCAATATAAGATTGGATCGC 59 11231028 11231048 CAGCTCATTTCTCATTGTCTC 59 NA Drosophila melanogaster 50 CBP FBgn0026144 FBtr0071053,FBtr0071052 2 2 2 118 X 7235526 7235614 ACTTGTTTAAGGCTGTGGA 59 7235696 7235714 TATCACAGCGAATGAAACG 58 NA Drosophila melanogaster 50 RpL36 FBgn0002579 FBtr0070155,FBtr0070158,FBtr0070157,FBtr0070156 2 4 4 115 X 522710 522793 CTTGAAGAACATCCAAACCC 59 522614 522632 TATCCTTGGACACCTTCAG 58 NA Drosophila melanogaster 50 woc FBgn0010328 FBtr0112857,FBtr0085178 3 2 2 86 3R 23083857 23083875 GTACTACGAGCGGTTTACC 59 23083725 23083807 CGAGTGACAATGTATTGCG 59 NA Drosophila melanogaster 50 eIF-3p66 FBgn0040227 FBtr0089622 2 1 1 85 3R 19507221 19507315 GAAGCGATATTGTCCTGGT 59 19507363 19507382 CTTGATAGTCATGAACTGCG 58 NA Drosophila melanogaster 50 SIFR FBgn0038880 FBtr0084098,FBtr0084099 2 2 2 84 3R 17109851 17109870 TTTGTGCCCTACATACAAGG 59 17106315 17109804 AGATGGCAATGAACCTGTC 59 NA Drosophila melanogaster 50 CG5840 FBgn0038516 FBtr0083454,FBtr0083455 1 2 2 280 3R 13362217 13362236 TATTCGTGATGATTGAGGCC 59 13362551 13362569 CTACTTCGTCTTTCCCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CREG FBgn0025456 FBtr0089895,FBtr0089896,FBtr0089897 1 3 3 60 3R 13219713 13219732 GATGCTAATAACAGGTCCAC 58 13219672 13219690 CAGTGAAGTCCAAATCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204 1 6 8 163 3R 11782022 11785052 GACTGATGAGGAACAATGG 57 11785179 11785197 TTGATATTGTCGGTTCGTC 57 NA Drosophila melanogaster 50 Neu3 FBgn0051314 FBtr0100189,FBtr0082973 2 2 2 83 3R 10496557 10497104 TATCTGCTTAAGCAGGCAG 59 10496492 10496510 GTAGTCGTGACTATGGTCG 59 NA Drosophila melanogaster 50 trx FBgn0003862 FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949 2 5 5 82 3R 10091189 10091209 TATGTTGGAGTCTTCAGATCC 58 10091050 10091145 TCGATAACCATTTCACCCG 59 NA Drosophila melanogaster 50 RpL3 FBgn0020910 FBtr0082350 2 1 5 182 3R 7048285 7048303 ATCAACAAGAAGGAGGTGG 59 7048449 7048825 CAAGCTGATCGAAGAACAG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG6208 FBgn0037789 FBtr0082195 2 1 1 61 3R 5946455 5946476 CAAGAAGACCTTCAAGAAATGG 59 5946415 5946434 TTTGTAATGTGTTCACCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9461 FBgn0037760 FBtr0082155 2 1 1 83 3R 5632008 5632027 CATTTATGTGCACGAGAACG 59 5631881 5631962 GAGGTTATCCAGACACCTG 59 NA Drosophila melanogaster 50 CG1103 FBgn0037235 FBtr0078909,FBtr0111220 3 2 2 61 3R 164767 164786 GTATACCTTTGTTCGGACAG 57 164810 164828 AGGTAGTAAGTAGCCAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)04053 FBgn0010830 FBtr0078535 2 1 1 107 3L 22732305 22732382 CAGAATCTGAGGCAATTGC 59 22732216 22732234 GTACAGATCGGGACTTCTG 59 NA Drosophila melanogaster 50 Mkrn1 FBgn0029152 FBtr0078383,FBtr0078384 3 2 2 90 3L 21524869 21524890 CAGAGCCAGAATGAAATAATCG 59 21524616 21524634 TTGAAATCATCTCCAGCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG4365 FBgn0037024 FBtr0078254,FBtr0078253,FBtr0078252 3 3 3 67 3L 20792308 20792326 GGCATGGAGATCAAGATCC 59 20792356 20792375 GTCTTCGTGTCTACAATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7730 FBgn0036689 FBtr0089584 3 1 1 82 3L 17021741 17021760 GATAAATGGTGCCTCAATGG 58 17021805 17021881 GGTCATCTCCATGTTTCGA 59 NA Drosophila melanogaster 50 CG10006 FBgn0036461 FBtr0075628,FBtr0113171 1 2 2 84 3L 14989470 14989489 GATAATGGAGTTTGCAAGCA 58 14989536 14989611 CATAGATCCAAGCGTACCA 58 NA Drosophila melanogaster 50 CG10971 FBgn0036309 FBtr0075948,FBtr0075949 2 2 2 99 3L 12763428 12763502 CATTACAGCAAACCCAGGA 59 12763347 12763365 TCAGTAAGCGAGAGTTTGC 59 NA Drosophila melanogaster 50 Ard1 FBgn0036064 FBtr0076349,FBtr0076352,FBtr0076351,FBtr0076350,FBtr0076348 1 5 5 60 3L 9966736 9966754 CTGAACCTCTACACCAACG 59 9966778 9966796 CATAGTACTTGGGCTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3689 FBgn0035987 FBtr0110863 2 1 2 152 3L 9404946 9404964 GGAGTGGATTGTTGAGGAC 59 9405080 9406318 GGTACAGCAAATAGTGCCT 59 NA Drosophila melanogaster 50 CG32351 FBgn0052351 FBtr0076639 2 1 1 106 3L 8614807 8614881 GATGCATATTGATGCCACC 59 8614949 8614969 CAATAAACTCGATGAGTGTCC 58 NA Drosophila melanogaster 50 CG33275 FBgn0035802 FBtr0089849,FBtr0089850 2 2 3 92 3L 7612959 7613370 GTCTATTTACCAGGCACAC 57 7613426 7613444 TTCATAGCAATTGATGCCG 58 NA Drosophila melanogaster 50 sif FBgn0085447 FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713 1 5 8 94 3L 5692112 5697030 GTTCCTTCGCAAGATTTCG 59 5697088 5697106 TATATGGTGACGCCATGAC 59 NA Drosophila melanogaster 50 Sucb FBgn0029118 FBtr0077134 1 1 2 131 3L 5555965 5556196 TATCACCACCAACAAGAGC 59 5555852 5555870 GTGATGTTGATACTGCGTG 58 NA Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0073135,FBtr0110924,FBtr0073134,FBtr0110920,FBtr0073133 1 5 11 192 3L 3578467 3593333 TTGCAGATATGGAGACTGG 58 3593488 3593507 CTGTTTGTTCAGAAAGACCT 57 NA Drosophila melanogaster 50 mu2 FBgn0002872 FBtr0072857 1 1 2 119 3L 1945528 1945665 GTGTCAAAGTTGCATCAGG 59 1945372 1945448 TCTGACAGATCTTCTGATAGTG 58 NA Drosophila melanogaster 50 Aprt FBgn0000109 FBtr0089421,FBtr0089420 2 2 2 80 3L 1884244 1884337 CTGGAGTACGGTATTGACAC 59 1884183 1884201 TAGATCGTCAACGACAACG 59 NA Drosophila melanogaster 50 n-syb FBgn0013342 FBtr0072818 1 1 5 220 3L 1632434 1633718 TATAAACTTGGACTCATAGGCG 59 1632235 1632253 TCGAGAAACTTTCGTCCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG9153 FBgn0035207 FBtr0072671,FBtr0072670 1 2 2 83 3L 1317542 1317560 AATGAGGATTACGACTGGC 59 1317604 1317680 CCATTTGATTGTATCATCGACC 59 NA Drosophila melanogaster 50 CG17090 FBgn0035142 FBtr0072552,FBtr0072551 3 2 2 111 3L 571964 572090 CTCTAGCAACATTGTGAATGG 59 572163 572181 GCAGTTGCTTACAATGTGG 59 NA Drosophila melanogaster 50 ken FBgn0011236 FBtr0072129 1 1 1 86 2R 19762609 19762683 GTTGATAAGGAACCTGCTG 58 19762732 19762751 TTAAAGTAGGTGGCATTCAC 57 NA Drosophila melanogaster 50 CG3215 FBgn0034825 FBtr0071974 2 1 1 88 2R 19016939 19016957 GACATATTCAAGTCGCCCA 59 19016810 19016889 GCAATGATGTTCCTTAGAGTG 59 NA Drosophila melanogaster 50 Nup214 FBgn0010660 FBtr0071996 2 1 1 80 2R 18809966 18809984 CTTAATGAGGCCTATGCCA 59 18809847 18809924 CATTAAACGCGTAATCTCTGG 59 NA Drosophila melanogaster 50 MED23 FBgn0034795 FBtr0071903 3 1 1 85 2R 18778142 18778212 AAACCACTACGACTTTCTG 57 18778261 18778279 TGAGAATTATGCGGAAGTC 57 NA Drosophila melanogaster 50 CG4752 FBgn0034733 FBtr0071832 3 1 1 72 2R 18366727 18366745 CATGTAGACCGCTACTTGG 59 18367283 18367301 TAAAGAGCACATCCACACC 59 NA DesignNoJunction Drosophila melanogaster 50 HmgD FBgn0004362 FBtr0071708,FBtr0071709 1 2 2 201 2R 17603110 17603202 GAAGGACAAGTCTGAGTGG 59 17603367 17603385 CTACTCGCTCTCATCATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG30463 FBgn0050463 FBtr0113380,FBtr0087112 2 2 5 114 2R 12566338 12566356 AAATCTAGGTTATGGCGGT 58 12562745 12566260 CATCCAGTACTGGTTTCCA 58 NA Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 3 5 7 82 2R 11836642 11836721 TTTGCTACGTGCTACTCTC 59 11836578 11836599 ATCCGCTCTAGTTATATTCGAG 59 NA Drosophila melanogaster 50 CG18324 FBgn0033905 FBtr0087523,FBtr0087524 1 2 2 60 2R 10057162 10057181 CATATTTACCGGACCAATGG 58 10057204 10057222 GGTTCAAGCTTGGTAAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sobp FBgn0033654 FBtr0088064 3 1 1 129 2R 7725502 7725520 CATCCAGTTGAAATGTCCG 58 7717932 7725409 GCGCGAATTCCTTTATCTC 59 NA Nonspecific Drosophila melanogaster 50 dap FBgn0010316 FBtr0088470,FBtr0088469 1 2 2 155 2R 5600928 5600946 TCAATTCCTCGCTAGAGTC 58 5601064 5602430 GCTCCTTCATGAATTCTGTG 58 NA Drosophila melanogaster 50 CG30338 FBgn0050338 FBtr0088533 3 1 1 61 2R 5486211 5486232 GGCTGATTTCAATGAGTTTCTC 59 5486254 5486272 GGGATAGAAGGCTAGTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vang FBgn0015838 FBtr0088566 1 1 1 60 2R 4992157 4992175 ACTACTACGTGGATTTCCC 58 4992199 4992217 GAGACCGATATTGGGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp4e2 FBgn0014469 FBtr0088745 2 1 1 92 2R 4333306 4333324 GATGTCATTTGCGACACAG 59 4333379 4333456 GTAGCACATGTCTTTGAAGG 58 NA Drosophila melanogaster 50 CG11191 FBgn0033249 FBtr0088868 3 1 1 231 2R 3889123 3889141 GATGTGAACAGCAACTGTC 59 3888910 3888929 CATTCGCCTTGTATTTCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gapdh1 FBgn0001091 FBtr0100479,FBtr0088903 2 2 2 61 2R 3679690 3679708 GCTAATCTCGTGGTACGAC 59 3679647 3679665 ACTTGATCAGGTCGATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3271 FBgn0033088 FBtr0086118,FBtr0086119 2 2 2 101 2R 2561682 2561770 ACATATTCGCAGTGACGAG 59 2561835 2561853 AATAGGCAAAGGCGTAGTC 59 NA Drosophila melanogaster 50 CG10949 FBgn0032858 FBtr0081367 1 1 1 60 2L 20416031 20416049 GCAGTCATCAGATCAACCA 59 20415989 20416010 AAGAGAAGGTCGTTAAAGTACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13077 FBgn0032810 FBtr0081257 1 1 1 289 2L 19566373 19566391 ATTTCCTATCTCACGCTGC 59 19566995 19567013 AGAATGCACAGTACGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CLIP-190 FBgn0020503 FBtr0080978 1 1 6 124 2L 17386352 17386371 GTACCCACATTCAAATGGGA 59 17394490 17398616 GACAGTCTCTTGATAGAGATCTG 59 NA Drosophila melanogaster 50 CSN1a FBgn0028838 FBtr0080671 3 1 1 62 2L 14763559 14763577 GATATACAAGTCTGCTGCC 57 14763603 14763621 TTATCGTAGTCGTAACGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pect FBgn0032482 FBtr0080440 3 1 4 196 2L 13208768 13209501 GAGAAAGAAGATTCGGCAG 58 13209720 13209739 TAGTCACCCAGTTTCTTAGC 59 NA Drosophila melanogaster 50 CG31760 FBgn0051760 FBtr0080338 2 1 1 95 2L 12168287 12168305 TAACAGCATCATTCTCGCT 59 12168364 12168440 TCTGGACTTGTTCCTTGAG 58 NA Drosophila melanogaster 50 salr FBgn0000287 FBtr0080235,FBtr0080236 2 2 2 120 2L 11372324 11372342 GAACTTCAGTTCGAGTTCC 58 11372425 11372533 CATATGGACCTTGAGATTCC 57 NA Drosophila melanogaster 50 Bka FBgn0010520 FBtr0079874 1 1 1 60 2L 9895478 9895496 GTAATGCACAGCTTAAACG 57 9895520 9895538 CGAATCTGATCCTTAAGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13101 FBgn0032084 FBtr0079783,FBtr0079784 1 2 2 82 2L 8978779 8978870 CCAGAATATGCGGATAAACTG 58 8978717 8978737 AGAGATATGATGTGCATACCC 59 NA Drosophila melanogaster 50 RpL36A FBgn0031980 FBtr0079546 3 1 1 153 2L 8042125 8042457 CCCATCTTCAGGAAGAAGG 59 8041990 8042008 AGAACTGGATCATCTGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 Wnt6 FBgn0031902 FBtr0079434 1 1 1 250 2L 7343047 7351187 AATCTTAATGCGCGATTCC 58 7351401 7351419 GACTGGGATGTTGATCCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG7337 FBgn0031374 FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012 3 5 5 130 2L 1937464 1937482 CACAATACGGAGAATGGGA 59 1937576 1938518 CTATGGCCTACATTCTCCA 58 NA Drosophila melanogaster 50 capt FBgn0028388 FBtr0100022,FBtr0100023 2 2 2 103 2L 1152249 1152267 GTATCTGTCCAAGGACTCG 59 1152103 1152183 AAGCCAACTCGGTATAATCG 59 NA Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 2 7 8 166 2L 119224 119295 TAATGCAGACTGATGTCCTG 59 119020 119038 TTGAGCCATGGTGTTTAGG 59 NA Drosophila melanogaster 50 l(2)gl FBgn0002121 FBtr0078171,FBtr0078170 1 2 6 135 2L 15703 17062 TTATCGTAAGACGGCACAG 59 15586 15604 GTACAATTCAACTCCGGGT 59 NA Drosophila melanogaster 50 CG9921 FBgn0030743 FBtr0074235 3 1 1 124 X 16225854 16225872 AAGATCAAGGAGAATCCGC 59 16225665 16225684 ATACGACTTCGCATCATCAG 59 NA DesignNoJunction Drosophila melanogaster 50 sog FBgn0003463 FBtr0074063 3 1 1 165 X 15501831 15502017 CAACATGAAACATTACGCTG 58 15501685 15501703 CGATGAGGTGTAGAAGGAG 58 NA Drosophila melanogaster 50 CG9213 FBgn0030655 FBtr0074071 1 1 1 107 X 15466547 15466565 GATTTCCGGCTAACTTTGC 59 15466394 15466412 ATTTCACCTTTCCGATGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12608 FBgn0030630 FBtr0074018 3 1 1 255 X 15237888 15237906 GAGAACGCTCATGTTATGC 58 15237498 15237516 TTTCCATGTCGATCTTCCA 58 NA DesignNoJunction Drosophila melanogaster 50 lwf FBgn0086221 FBtr0100009 1 1 1 80 X 15030456 15030476 CCGTGTTCTTCTTTAATGTCG 59 15030516 15030607 CGTTGGTATCGAGAATTATCG 58 NA Drosophila melanogaster 50 CG12116 FBgn0030041 FBtr0071240 1 1 1 60 X 8362496 8362515 TAATTTCATGGCGGATAAGG 57 8362455 8362474 CTCGTTGTGAAGGATTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15771 FBgn0029801 FBtr0070809,FBtr0070810 1 2 2 146 X 5652317 5652335 CTTTCTCAATGTCAAGCCG 59 5652502 5652520 ACATCCTCTAGCGATTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 snoRNA:Psi28S-2442a FBgn0082989 FBtr0113582 2 1 1 62 3R 1424438 1424456 TCGGTGTCAAGAATATGCA 58 1424394 1424415 GTGTTTAGGACAAACCAAAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18754 FBgn0042106 FBtr0084439 1 1 1 283 3R 19510412 19510905 ATCGGCTATCCTTGATTCG 59 19511216 19511235 CAATAGACAAATGGGTTGGA 57 NA DesignNoJunction Drosophila melanogaster 50 PSR FBgn0038948 FBtr0084239 3 1 1 64 3R 18187712 18187730 CAAGAAGTATCGCAACCAG 58 18187666 18187684 TCATCTTGACGCTATAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AnnIX FBgn0000083 FBtr0089517,FBtr0089520,FBtr0089518,FBtr0089519 2 4 4 243 3R 16893207 16893794 TACTACCCATTCAAGTGCA 58 16894001 16894019 TAACATCCTCGAATTTGCC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 DNaseII FBgn0000477 FBtr0083538 1 1 1 92 3R 13845224 13845801 AAACGATGTAGATTGGTGG 57 13845857 13845875 TACAGGTACTTCAAGCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14879 FBgn0038419 FBtr0083325,FBtr0083326 3 2 2 106 3R 12173232 12174503 AATTCTCGGTGAACTTTGTC 58 12173145 12173164 GTTCCGCTTATAATTCTCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33098 FBgn0053098 FBtr0082580,FBtr0082579 3 2 3 123 3R 8213638 8213708 AGCTGAAGGAAGTCTTCTC 58 8213794 8213813 ATCATCTGTTCCAGTAGCTG 59 NA Drosophila melanogaster 50 CG3925 FBgn0037780 FBtr0082174 3 1 1 103 3R 5876650 5876739 AGTATTGCAATCCAGAGGG 59 5876806 5876824 CCAGCTAAACTTTGTGGAC 58 NA Drosophila melanogaster 50 Paps FBgn0020389 FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885 3 6 6 94 3L 19853426 19853508 CTAGACAGCATGGAGATCC 58 19853566 19853584 AACTCATCCTTCCTCTTGG 58 NA Drosophila melanogaster 50 CSN1b FBgn0027057 FBtr0075074 3 1 1 60 3L 18897546 18897567 ACCTACAACGTAAATCTCTACC 59 18897507 18897526 TTCCAGCGTTTAGATCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13458 FBgn0036479 FBtr0075637 1 1 1 137 3L 15107474 15107492 TCAGCAATCTTGGAAAGCT 59 15107593 15107932 ACTTGCAGAAATTGCACAG 59 NA Drosophila melanogaster 50 CG13476 FBgn0036441 FBtr0075686 1 1 2 90 3L 14698843 14698861 CCAATGTTATGGGCTACGA 59 14698915 14699044 GGATATTGATCCAGGTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11008 FBgn0036315 FBtr0075932 2 1 1 60 3L 12814312 12814330 ATACTCCAACCACAATGCT 58 12814354 12814372 GAATCTCCTTCAACTGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33171 FBgn0053171 FBtr0089838 2 1 2 184 3L 7042022 7042040 GAATCTGCTCAACAGTCCA 59 7043787 7044352 GATTCTGTACCCTGGATGAG 59 NA Drosophila melanogaster 50 CG15111 FBgn0034419 FBtr0086581,FBtr0086580 2 2 2 69 2R 15027275 15027293 TATTCCGTAACGTTCCAGC 59 15027389 15027407 TGAGATCAAGTCCTTTGGG 58 NA DesignNoJunction Drosophila melanogaster 50 nemy FBgn0033765 FBtr0111018,FBtr0087876,FBtr0087878,FBtr0087879,FBtr0087877,FBtr0087875 3 6 6 197 2R 8558847 8559072 AAGCGGATGAGGAAATCTG 59 8558668 8558689 GATCTCTGTACGCTTATAGTCC 59 NA InUTR Drosophila melanogaster 50 Ret FBgn0011829 FBtr0081496,FBtr0081494,FBtr0081493,FBtr0081492,FBtr0081495 3 5 5 99 2L 21184210 21184286 GAGTTAAAGTTGGTTCATCGTG 59 21184132 21184150 AAACATCTCGAGTCAGTCC 59 NA Drosophila melanogaster 50 CG15142 FBgn0032645 FBtr0080995 2 1 1 60 2L 17498305 17498380 CTATAGGTCTCGATGAGAACG 59 17498265 17498284 AGGACATTGAGTAGATCGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31728 FBgn0051728 FBtr0080453 1 1 1 83 2L 13256739 13256835 TTCGAATTCAGCACTTTGC 59 13256882 13256900 AATTGGTTGGATCTCCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Oscillin FBgn0031717 FBtr0079102,FBtr0079101 3 2 2 152 2L 5548088 5548173 GATGAGTATGTGGGACTGG 59 5548289 5548307 CTCGAACTTATTGCACTCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG15418 FBgn0031554 FBtr0077556 1 1 1 218 2L 3621584 3621602 ATTGGAGTACGAAAGTGCA 59 3621320 3621402 GCAGGCTATTATCTGTTCG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 tRNA:R:85Cb FBgn0053551 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me18S-A1494 FBgn0086073 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR32481 FBgn0052481 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:E4:56Fc FBgn0011850 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CR32658 FBgn0040859 FBtr0073628,FBtr0073626,FBtr0073627 2 3 3 141 X 11985679 11985698 CAATTGCATTAACAAGCCAG 58 11985865 11985883 ACCATAGTAATCCCGTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG41472 FBgn0084032 FBtr0111205 3 1 1 70 X 22035776 22035794 TTCAAACAATCGCAGTCTC 58 22035828 22035846 GAGTCGAGTTGAATCATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1702 FBgn0031117 FBtr0077310 2 1 1 84 X 20339660 20339679 TTCATTATCTTCCGGCTGAG 59 20340068 20340086 TGAAGTCTTCGGTCAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32529 FBgn0052529 FBtr0100839,FBtr0074800,FBtr0074801 2 3 3 81 X 19795510 19795910 GACCGTATATGGAATATCCACC 59 19795952 19795970 ATATGAGGCCCAGTATGGA 59 NA Drosophila melanogaster 50 CG12701 FBgn0031071 FBtr0074808,FBtr0074807 1 2 2 60 X 19671582 19671601 CCACATGATAATCAAGAGCG 58 19671541 19671561 TATGCTCTTCTCGATCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32528 FBgn0052528 FBtr0074793 2 1 1 137 X 19640675 19640693 TGAAGAAGGTCCAAGAGGA 59 19640873 19640891 GATCACTGATGGACTGTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Rpp20 FBgn0066304 FBtr0091935 1 1 1 60 X 19638564 19638582 GATGGGAAGCAATTATCCC 57 19638606 19638624 TTGTTTGTGGTATTTGGCG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Tim9b FBgn0027358 FBtr0074766,FBtr0074767 1 2 2 93 X 19512304 19512322 CGTGGATAATCTCAGCCAG 59 19512167 19512185 CATATTCTGGTTGAAGCGC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 l(1)G0156 FBgn0027291 FBtr0074780,FBtr0074781 3 2 2 92 X 19413855 19413945 GAACATTATGCGCATGTCC 59 19413781 19413801 AGATACTTCTCTTCGAACTGG 58 NA Drosophila melanogaster 50 CG12609 FBgn0030952 FBtr0074606 2 1 2 93 X 18641013 18641032 ATGAACAGCAGTTAGGAGAG 59 18640886 18640904 GTCAAATGGATGGCAAGTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CrebB-17A FBgn0014467 FBtr0074555,FBtr0074556,FBtr0112879,FBtr0074554,FBtr0074557,FBtr0112877,FBtr0112878 1 7 7 172 X 18267097 18267115 GGAGTCATACAGACAGCAG 59 18267324 18267342 TTACACGGAAAGGTTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 os FBgn0004956 FBtr0074581,FBtr0112847 2 2 2 81 X 18201073 18201091 ACAACTACAAGTTCCTGCC 59 18200821 18200839 ACGTAAGTTTGCATGTTGC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG32494 FBgn0052494 FBtr0074506 3 1 1 78 X 17894604 17894623 AACAATATTTGTCGCCACAG 59 17894664 17894682 TTTACTGCCTAGTCGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL22 FBgn0030786 FBtr0074330 2 1 1 182 X 16678493 16678511 AAGATGTGGTACATCGCTG 59 16678657 16678789 GAAGGATTCGGCTATCCAC 59 NA Drosophila melanogaster 50 mthl1 FBgn0030766 FBtr0074314 3 1 1 63 X 16537079 16537097 GATGTCAAGTCCTCATCGG 59 16537124 16537142 TAACGACGACTAGCTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9911 FBgn0030734 FBtr0074243,FBtr0074241,FBtr0074242 1 3 4 97 X 16190148 16190344 CGATTCTACAGCTACTCCA 58 16189337 16190087 TTCATTAGACGCTAGGGTC 58 NA Drosophila melanogaster 50 eas FBgn0000536 FBtr0074215,FBtr0074213,FBtr0074214,FBtr0074212,FBtr0074211 1 5 5 111 X 16178692 16178711 TCTATGTCCAGGTCAATCAG 58 16178784 16179063 AATGCATAGCCTACGTAGTC 59 NA Drosophila melanogaster 50 Stim FBgn0045073 FBtr0074161 3 1 3 133 X 15831778 15833078 AGAGCATAAGTTCCATGGG 59 15831663 15831681 ATCATCTAGCTGACGATGC 59 NA Drosophila melanogaster 50 shtd FBgn0004391 FBtr0074078,FBtr0074077 3 2 2 80 X 15350326 15350404 CCTATACGATCACGTAACCA 58 15350265 15350283 CGACTCAAATAGGCATCGA 59 NA Drosophila melanogaster 50 dah FBgn0015926 FBtr0074007 2 1 1 60 X 15222963 15222982 TTCTTCTGGAATGTCTACGA 58 15223062 15223080 TCCTGATCTCTAACAGGGA 58 NA DesignNoJunction Drosophila melanogaster 50 mew FBgn0004456 FBtr0073731,FBtr0073732 3 2 2 83 X 13109890 13109967 TCACAATAACATAGAGGTGGAG 59 13109828 13109846 ATAATCAGCCACGGTATCG 59 NA Drosophila melanogaster 50 CG15720 FBgn0030442 FBtr0110989 1 1 2 90 X 12940965 12940983 CTATCATGAGGAGTGCCTG 59 12941035 12941903 GATCTGGTTCTTGAATCTCCT 59 NA Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073484 2 1 12 186 X 11289962 11289982 CTGATCATTGGAAAGACACAG 58 11290130 11294832 AAAGCATAAAGGCTGTCGA 59 NA Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 3 8 9 95 X 10692567 10692660 GAATAAGGGTGAAATTTGCC 57 10692491 10692509 TGCATGATCCGTTTAATGG 58 NA Drosophila melanogaster 50 RpS28b FBgn0030136 FBtr0071360 1 1 1 126 X 9448742 9448760 CATGGACAAACCAGTTGTG 59 9448850 9448868 CACGTTTCGGATAATCTGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Obp8a FBgn0030103 FBtr0071307 1 1 1 260 X 9109373 9109391 ATCTCCATTGCTTCTGGTC 59 9109615 9109633 TGATGACATCGGACATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12118 FBgn0030101 FBtr0071340,FBtr0071339 2 2 2 125 X 9089595 9089613 GAAGGAGACATCGAAATGG 57 9089159 9089177 TAGAAAGAATGGACGTCCG 59 NA DesignNoJunction Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274 2 10 10 164 X 8768354 8768372 GGATGAGAACGAGAACGAG 59 8768131 8768227 TCTTGTTTCAGAGCCTTGAG 59 NA Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071271,FBtr0071270 1 2 10 100 X 8770080 8770347 GATGATATGACTGGATCAATGC 59 8769829 8769847 GGATAGAATTTGGCACGGA 59 NA Drosophila melanogaster 50 l(1)G0095 FBgn0026679 FBtr0071234 3 1 1 60 X 8451245 8451265 CTATAGTTTAACGGCCATTGC 59 8451205 8451225 CATTATCTCCAGCTGATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15343 FBgn0030029 FBtr0071178 3 1 1 61 X 8166949 8166968 GCCAGATGTTAAGGATAAGG 57 8166907 8166925 TGGCTCCAATCAATCTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gclc FBgn0040319 FBtr0071108,FBtr0071107 1 2 2 110 X 7997903 7997922 CATTGAACAGTATCTTCGCT 57 7997746 7997830 GAATCCTGCTTGTAATCCG 58 NA Drosophila melanogaster 50 fs(1)h FBgn0004656 FBtr0071120,FBtr0071118,FBtr0071122,FBtr0071121,FBtr0071119 2 5 5 117 X 7944306 7944477 CAAGAAAGATGAGTCCGCT 59 7944207 7944225 ACTCGAACTGCTATCACTC 58 NA Drosophila melanogaster 50 CG4095 FBgn0029890 FBtr0070955 1 1 1 134 X 6577282 6577303 CGAGCTAAATGTATTCAAACCC 59 6577458 6577476 ATCTTGTCGATCCTCTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG3847 FBgn0029867 FBtr0070905 3 1 1 60 X 6242092 6242110 CTTCTACTGTCCCAATTGC 58 6242134 6242152 CATATGAAGCTTCAGGGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14445 FBgn0029851 FBtr0112954,FBtr0070893 1 2 2 115 X 6132220 6132983 GATTCTACCGCAAGATTGC 58 6133062 6133080 GAACTTGTACATGGCATGC 59 NA Drosophila melanogaster 50 Mipp2 FBgn0026060 FBtr0070884 1 1 1 83 X 5978077 5978263 GCCATTAGTTCCTCTGAGG 59 5978012 5978030 CAATTTGAGAAGCGTACCC 58 NA Drosophila melanogaster 50 CG12239 FBgn0029810 FBtr0070814 1 1 1 60 X 5687667 5687686 GTCGAAGAGGAAGTAGAACG 59 5687709 5687727 GCCGTTGTATTTCTCTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16756 FBgn0029765 FBtr0070776 3 1 1 235 X 5321899 5321917 ATGGATCTCGGAACTATGG 58 5322180 5322199 CTAGATCCCACAGATAACCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG4165 FBgn0029763 FBtr0070774,FBtr0070772,FBtr0070773,FBtr0070775 2 4 4 80 X 5317037 5317157 TAGAACACTACCAGACACCT 59 5317200 5317218 ACTCATAGCACCAGATGTC 58 NA Drosophila melanogaster 50 Rnp4F FBgn0014024 FBtr0070752,FBtr0112876,FBtr0112875,FBtr0070753 1 4 4 80 X 5214530 5214602 CCAAATAATGGGCTATCCG 58 5214468 5214486 CCATTGTATTCGCTTTCCA 58 NA Drosophila melanogaster 50 Rnp4F FBgn0014024 FBtr0070752,FBtr0112876,FBtr0112875,FBtr0070753 1 4 4 80 X 5214530 5214602 CCAAATAATGGGCTATCCG 58 5214468 5214486 CCATTGTATTCGCTTTCCA 58 NA Drosophila melanogaster 50 CG2982 FBgn0029704 FBtr0070649,FBtr0070648 2 2 2 60 X 4215547 4215565 TTCAGCTCGCAAGATAGAG 59 4215589 4215607 CTCGGTCATAAGAAGACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lva FBgn0029688 FBtr0070626 1 1 1 80 X 3858522 3858611 TCCTCGTTACAGAATGTATCC 59 3858462 3858483 CAGATTCTCTTTAAGGCTATCC 58 NA Drosophila melanogaster 50 Vap-33-1 FBgn0029687 FBtr0070619,FBtr0070618,FBtr0070616,FBtr0070617 2 4 4 95 X 3846066 3846153 GAGGATAAGTTTAAGCCATCCA 59 3846209 3846227 TTCAATGTTGCATTCACGC 59 NA Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070522,FBtr0070511,FBtr0070514 3 14 14 87 X 3232771 3232789 CTACCAGAGCATGATACCG 59 3232840 3233011 AAGGGTTACTTGAAAGCGT 59 NA Drosophila melanogaster 50 kirre FBgn0028369 FBtr0070560,FBtr0070559 2 2 2 66 X 3024318 3024336 AATGACCGGAGACTTTACC 58 3024435 3024453 TATGGCATCGTGATATTGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG2658 FBgn0024992 FBtr0070502 1 1 2 117 X 2590288 2590368 GATATCCTAGACAAGGCGC 59 2590189 2590207 GTTTCACCGATGACAAGTG 59 NA Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 2 13 13 80 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567130 2567220 TGTATTGAGAGCTCATGCTC 59 NA Drosophila melanogaster 50 ptr FBgn0003159 FBtr0070404,FBtr0070403,FBtr0070402 3 3 3 100 X 2243041 2243059 AGAGTTCCACTGAGTAAGC 58 2242892 2242910 TACACCTGACTAGCATCCA 59 NA DesignNoJunction Drosophila melanogaster 50 br FBgn0000210 FBtr0070264 2 1 7 157 X 1548642 1548709 TAAGCTCTATAACCACAGCG 59 1548827 1548847 GAATTGAGGTAGGAGTCTGAG 59 NA Drosophila melanogaster 50 br FBgn0000210 FBtr0070262 1 1 7 88 X 1531146 1531164 CCAATATCGATCCCTCAGC 59 1531360 1536928 CGTCAGTTTACCTTGAGGG 59 NA Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 1 8 8 60 X 551391 551410 CATTATCTCATGGGATGCAG 58 551433 551451 TATCAGCTCAAACAGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR41604 FBgn0085814 FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269 1 4 4 104 U 3449415 3449487 TTTCTGAAGCAAAGTCCCA 59 3449555 3449573 CTTGATACTGATCTCCCGC 59 NA Drosophila melanogaster 50 plexA FBgn0025741 FBtr0089226,FBtr0089223 1 2 5 80 4 1040636 1042882 CCATGTGTTCTAACGAAACTG 59 1040576 1040595 GGTTTCTCCTCCTAAAGGTG 59 NA Drosophila melanogaster 50 CG32016 FBgn0052016 FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232 3 6 6 146 4 974515 974656 CTACTCTCAAGAATTGCATTCG 59 974390 974408 CTTGGTGATTGCGTATCCT 59 NA Drosophila melanogaster 50 Thd1 FBgn0026869 FBtr0089106 2 1 1 82 4 570234 570347 TCGTTATAGTCGGGATAAATCC 59 570173 570191 CTTCCAGAAGTGATTGCCT 59 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 1 7 7 82 4 208987 209060 CGGATCATAGACTTACGGA 57 208923 208941 GAAGCATGGTTTAGTCAGG 58 NA Drosophila melanogaster 50 snmRNA:342 FBgn0065098 FBtr0091662 3 1 1 61 3R 19555870 19555889 CTTAGATATGGACGAGTTGG 57 19555828 19555846 TCTCAGACGAGAAAGTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ef1alpha100E FBgn0000557 FBtr0085834,FBtr0085835,FBtr0085833,FBtr0085832 3 4 4 189 3R 27567379 27567397 TGGTCACCGAAGTAAAGTC 59 27567550 27567645 TTGAGCACAATCACCTGAG 59 NA Drosophila melanogaster 50 Ef1alpha100E FBgn0000557 FBtr0085834,FBtr0085835,FBtr0085833,FBtr0085832 1 4 4 116 3R 27567452 27567470 CTTCAACGTGAAGAACGTG 59 27567550 27567645 TTGAGCACAATCACCTGAG 59 NA Drosophila melanogaster 50 CG31002 FBgn0051002 FBtr0085813 3 1 1 60 3R 27220764 27220782 CGATATTCCAGTTCCCGAG 59 27220662 27220682 AGTAGATGCAATCCTAAGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CDase FBgn0039774 FBtr0085649,FBtr0085647,FBtr0085646,FBtr0085648,FBtr0085645 1 5 5 80 3R 26289006 26289024 CTGCTCTATGACATCTCCA 58 26289067 26289145 TTTGATGCACAGATACAGTC 57 NA Drosophila melanogaster 50 RpS7 FBgn0039757 FBtr0089423,FBtr0089425,FBtr0089422 3 3 4 69 3R 26032436 26033825 TTGAACACAAAGTCGACAC 58 26032385 26032403 AATTCGAAGGTAACATCGC 58 NA DesignRelaxed Drosophila melanogaster 50 Takr99D FBgn0004622 FBtr0085507 1 1 1 98 3R 25777692 25777710 CACTGAACCCTTTAGTCGG 59 25777548 25777631 GATTTCTGGGTATCATTGCG 59 NA Drosophila melanogaster 50 Doa FBgn0053553 FBtr0113466 2 1 9 81 3R 24728520 24745224 GACTATCTAACAGCAAAGCC 58 24745268 24745286 TGTGATGGAGAATGTCTCC 58 NA Drosophila melanogaster 50 Ppn FBgn0003137 FBtr0085295,FBtr0085294 3 2 2 187 3R 24348345 24348425 AACTTGGTGATCAACACGA 59 24347926 24347944 TAGATGTAAGCTGGCTGAC 58 NA Drosophila melanogaster 50 CG17856 FBgn0039576 FBtr0085279 3 1 1 61 3R 24120012 24120030 AAACTGTACGATGAACGCA 59 24120055 24120073 GTCTTGGTCATGGAAAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 btz FBgn0045862 FBtr0085220,FBtr0085221 1 2 2 60 3R 23528445 23528463 AAAGCATAAGGTCAAGGGT 58 23528485 23528505 GATGTGATCTATGTTGTCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ald FBgn0000064 FBtr0084995,FBtr0084994,FBtr0084999 3 3 6 152 3R 22082688 22082706 CAAGAAGGAGAACATTGCT 57 22081053 22081071 AACCAAACGCCTTAGTAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG8934 FBgn0039391 FBtr0084945 3 1 1 69 3R 21739496 21739514 TATCCGCAACCTACTACGA 59 21739604 21739622 GGAACCAATTGATCCTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5959 FBgn0039387 FBtr0084940 3 1 1 60 3R 21724661 21724679 ACCCATTACTCCAGTTTCG 59 21724700 21724721 TGATTTGAAAGAGTACCTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 BG642167 FBgn0083939 FBtr0110770 2 1 1 69 3R 21632399 21632417 AGAAACATCCGATCTCTGG 58 21632450 21632468 ATTTATCGAGGCTTGAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10550 FBgn0039321 FBtr0084857,FBtr0084858 1 2 3 226 3R 21133346 21133424 TATACTGCTGAAGGATGGC 58 21133138 21133156 TAATCAATTCGTCAGTGGC 57 NA DesignRelaxed Drosophila melanogaster 50 CG11891 FBgn0039309 FBtr0100221,FBtr0100222,FBtr0100223 1 3 3 60 3R 21098724 21098743 ACTGATCTTTGAACCAACGA 59 21098765 21098784 TATCTGATCCATTGATGCCT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33095 FBgn0053095 FBtr0100204 1 1 2 231 3R 20925152 20925170 GACACAAATGTCAAACGGA 58 20925846 20925864 CGTTCGACTTCATATCGGT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG11791 FBgn0039266 FBtr0113283,FBtr0084762 2 2 3 142 3R 20877259 20877277 TCTACAATTGCCTGAGTCC 58 20878307 20878327 CTTCAATTCTGGAGGTATCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11120 FBgn0039250 FBtr0084716 2 1 2 84 3R 20749875 20749895 CTTTCAGAGTCCTATTGAGGT 58 20749941 20750011 CCGGTTATTGACATTGGTC 58 NA Drosophila melanogaster 50 CG18410 FBgn0039226 FBtr0084741 2 1 1 97 3R 20624871 20624890 ATTGGGATTCAAGGACAAGG 59 20624248 20624266 CAATCAATCCCTTGATGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13631 FBgn0040600 FBtr0084693 1 1 1 60 3R 20595718 20595738 ATAGTTCGATTCGTATGACCC 59 20595760 20595778 CACTTTGAAGCCTCTAACG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13624 FBgn0039209 FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795 2 6 6 125 3R 20386538 20386624 TAAGGTGTACAAGCACAGTG 59 20386432 20386450 GTCATGTCATTGATGGTGC 59 NA Drosophila melanogaster 50 Golgin84 FBgn0039188 FBtr0084629 3 1 1 60 3R 20182428 20182447 AAAGGCTTTAACCCAATCAC 58 20182387 20182406 CTCACTCGTAACTCTTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Myo95E FBgn0039157 FBtr0100517,FBtr0100518,FBtr0100519,FBtr0100520 3 4 7 117 3R 19985037 19985205 TACCCATTACCCGTATAACG 58 19984881 19984900 ACATTTCGATACAGCTTGAG 57 NA Drosophila melanogaster 50 Tsc1 FBgn0026317 FBtr0084546 3 1 1 86 3R 19956785 19956864 TTAAGCTTATGACGCACGA 59 19956914 19956932 AATTCGGTATGATCGGCAG 59 NA Drosophila melanogaster 50 Gdh FBgn0001098 FBtr0089499,FBtr0089496,FBtr0089497,FBtr0089498 2 4 4 97 3R 19763339 19763461 AAGCTAAGATCATTGCCGA 59 19763260 19763278 GTACAGATCGGGAATGACC 59 NA Drosophila melanogaster 50 CG10365 FBgn0039109 FBtr0084447,FBtr0084448,FBtr0084446,FBtr0084449 2 4 4 108 3R 19554818 19554837 TATTCGAGGATATGTTCGCC 59 19555685 19556379 AGTGATTCCCTCTTTGTCC 58 NA Drosophila melanogaster 50 CG7029 FBgn0039026 FBtr0084312,FBtr0113270,FBtr0113271,FBtr0113269 3 4 4 93 3R 18614228 18614308 ATAGTTTCTATGCGGATCCC 59 18614364 18614382 TTGCGTTTCACTATGTCCT 59 NA Drosophila melanogaster 50 CG7029 FBgn0039026 FBtr0084312,FBtr0113270,FBtr0113271,FBtr0113269 1 4 4 92 3R 18614228 18614308 ATAGTTTCTATGCGGATCCC 59 18614363 18614381 TGCGTTTCACTATGTCCTC 59 NA Drosophila melanogaster 50 PyK FBgn0003178 FBtr0084213,FBtr0084214 2 2 2 191 3R 18197875 18197951 CACTCATCTACAAGGAGCC 59 18198192 18198210 GCAGAATTTATTCGACGGT 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG33092 FBgn0053092 FBtr0084145,FBtr0084143,FBtr0084140,FBtr0084142,FBtr0084146,FBtr0084141,FBtr0084144 3 7 7 268 3R 17705102 17705177 AGGACTTTCGGGATTTGTG 59 17705407 17705427 AGGTACCAGTGAAGTTAATCC 59 NA DesignRelaxed Drosophila melanogaster 50 Caki FBgn0013759 FBtr0084161 3 1 5 106 3R 17643797 17643881 GGTTATCGTTTGAAGCACC 59 17643709 17643727 CTCGGTTATGGAGAGTCTG 58 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084062 1 1 22 92 3R 17190500 17190519 ATCTGGTGATTGGTAAAGAC 57 17190359 17190445 ACACATGGGTTATGATGTC 57 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084067,FBtr0084073,FBtr0084063,FBtr0084065,FBtr0084078,FBtr0084069,FBtr0084071,FBtr0114360,FBtr0084070,FBtr0084061,FBtr0114361,FBtr0084076,FBtr0084075,FBtr0084062,FBtr0114359,FBtr0084064,FBtr0084077,FBtr0084074,FBtr0084066,FBtr0084060,FBtr0084068,FBt 3 22 22 87 3R 17202597 17202615 GATTGGTGTTATCCGTCTG 57 17202451 17202547 TTGTTCAGGAATACGATAGC 57 NA Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0084024,FBtr0110938,FBtr0084018,FBtr0112916,FBtr0084019,FBtr0084020,FBtr0110940,FBtr0110939,FBtr0084021,FBtr0084022,FBtr0112915 2 11 12 120 3R 17033377 17036518 CTATCAGATCTGGAAGAGGAC 58 17036600 17036618 TTACAAGAAGCTGGGTGTC 59 NA Drosophila melanogaster 50 Stat92E FBgn0016917 FBtr0089484,FBtr0089486,FBtr0089485,FBtr0089487,FBtr0100457 2 5 5 81 3R 16366167 16366256 TCATAATGTCAGAGATCCAGTC 59 16366107 16366125 GATGATTGACCGGATAGGC 59 NA Drosophila melanogaster 50 CG7333 FBgn0038715 FBtr0114553 2 1 1 88 3R 15427577 15427655 CGTGAAGTCAGTCATTATAACC 58 15427704 15427722 AGGAGAAGAGCTTAAAGGG 58 NA Drosophila melanogaster 50 CG3517 FBgn0038706 FBtr0083770 2 1 1 60 3R 15250532 15250552 CGTGGACATTATCACATATGC 59 15250492 15250512 GGTATCAATGCAATAGCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31221 FBgn0051221 FBtr0083762,FBtr0083763 3 2 2 122 3R 15279980 15282852 CTAATGAGATCGGACCTGG 58 15282937 15282956 CAAGAAGAACTTCACATCGC 59 NA Drosophila melanogaster 50 CG31241 FBgn0051241 FBtr0083570 2 1 1 60 3R 14082498 14082518 AGGAAAGAAAGACACAGTACG 59 14082540 14082558 AACAGATCATGATCGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14879 FBgn0038419 FBtr0083325 2 1 2 60 3R 12173001 12173020 TCCAACTTTCATCCACAGAG 59 12172960 12172978 GAATTTGCGTAGTCGAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pad FBgn0038418 FBtr0083282 3 1 1 103 3R 12168619 12168638 CAGTACACCATAACGATGGA 59 12168704 12168777 TCTTCCAAAGCAGTCTGTC 59 NA Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204 3 6 8 198 3R 11782022 11785052 GACTGATGAGGAACAATGG 57 11785214 11785232 CTCCCAATCGTTGTTAGTC 57 NA Drosophila melanogaster 50 CG5213 FBgn0038345 FBtr0083148 1 1 1 60 3R 11321190 11321208 GACAAGCGTAAATCTTCCC 58 11321232 11321250 CATGATGATCGTTCGTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14869 FBgn0038341 FBtr0083159,FBtr0083160 1 2 2 82 3R 11271112 11271130 ACAGTTCTGTGACAAGTCC 59 11270981 11271066 TCGTCACAGTGAGATTGAG 59 NA Drosophila melanogaster 50 CG14869 FBgn0038341 FBtr0083159,FBtr0083160 1 2 2 82 3R 11271112 11271130 ACAGTTCTGTGACAAGTCC 59 11270981 11271066 TCGTCACAGTGAGATTGAG 59 NA Drosophila melanogaster 50 CG31301 FBgn0051301 FBtr0083087 1 1 1 94 3R 11173269 11173287 ACTATGTGAGATCGGACGA 59 11173345 11173427 AAATTGTCTGGCGATTTGG 59 NA Drosophila melanogaster 50 Tm1 FBgn0003721 FBtr0089957,FBtr0089963,FBtr0089966,FBtr0089967,FBtr0089962,FBtr0089961,FBtr0089958,FBtr0089964,FBtr0089959,FBtr0089965 3 10 12 206 3R 11120874 11120892 TTGCTCGAAGAAGACTTGG 59 11122405 11122424 GTATTTCTTGTCAGCCTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG14861 FBgn0038280 FBtr0083023 2 1 1 60 3R 10840873 10840891 GGCATTGTTATTGTGTCCC 59 10840913 10840933 CCTGATCTTTATCCAGATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycC FBgn0004597 FBtr0083010 1 1 1 60 3R 10715030 10715050 GATTTAGACAAGGTCCAGGAG 59 10714990 10715008 CCTTCCACAACTCGTACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8087 FBgn0038241 FBtr0082983 3 1 1 83 3R 10390392 10390410 TCACAGGATGCATTGACTG 59 10390327 10390346 CAGTTGTACTGGTTGTATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8790 FBgn0027610 FBtr0082747,FBtr0082748 2 2 2 159 3R 9193735 9193754 AAGAAGTACGTCAATACGGA 58 9193875 9193984 CATTATTGTAGTTGCGTCGT 58 NA Drosophila melanogaster 50 CG8795 FBgn0038139 FBtr0100149,FBtr0082774,FBtr0082773 1 3 3 127 3R 9157366 9157631 TTGTTATGCTCAGGAATGC 58 9157257 9157275 GTTAGAACTGTCGCATTGG 58 NA Drosophila melanogaster 50 CG34402 FBgn0085431 FBtr0112655,FBtr0112654 2 2 3 83 3R 8212108 8212234 TTTCTGGCTAGATTGCTCC 59 8212281 8212299 GAATGGCTGGCATTAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10041 FBgn0038014 FBtr0082613 1 1 1 60 3R 8177551 8177569 CTTTCGAATGAGTTCGTGC 59 8177509 8177527 GTTGTTTGGTTGGATTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14740 FBgn0037988 FBtr0082552 1 1 1 90 3R 7888309 7888327 TAATAGCGTGATTGGAGGA 57 7888167 7888186 TCCACGGTAATAAATACCCT 57 NA DesignNoJunction Drosophila melanogaster 50 wkd FBgn0037917 FBtr0082414,FBtr0082413 1 2 2 135 3R 7409665 7409685 GGCCTACTCGATATACAATCC 59 7409782 7409858 GTCCTGCAGGTATACATCG 59 NA Drosophila melanogaster 50 CG6782 FBgn0037912 FBtr0100465,FBtr0100462,FBtr0100461,FBtr0100464 1 4 4 236 3R 7386647 7386665 GTTAAGAAGACGGTGGGAG 59 7386370 7386388 CTTCACCTTGATGGTCTCC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG5276 FBgn0037900 FBtr0082390 3 1 1 60 3R 7258194 7258212 CGATAGTCCTGGAATCAGC 59 7258236 7258254 ACTAGCTCAGATAGCTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL3 FBgn0020910 FBtr0082347,FBtr0082346 3 2 5 127 3R 7047973 7047991 GTAAGGTTAAGGCCTTCCC 59 7048082 7048293 CTTGTTGATCTTGGAGCCA 59 NA Drosophila melanogaster 50 SelR FBgn0037847 FBtr0082296,FBtr0082294,FBtr0082292 3 3 6 166 3R 6692389 6692408 CAACAAACACTACGAGAAGG 58 6689539 6692261 GTATACGTTCTGGTATGCTG 57 NA Drosophila melanogaster 50 MED7 FBgn0051390 FBtr0082311 1 1 1 60 3R 6586021 6586039 AAGATTAAGACGGAGGTGG 58 6585979 6585997 AACTGGGATCATTCTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31272 FBgn0051272 FBtr0082312 1 1 1 80 3R 6582679 6582760 AAACGCATGATGACTTACG 58 6582617 6582635 TGTCATTAGACTGCTCACG 59 NA Drosophila melanogaster 50 CG3999 FBgn0037801 FBtr0082225 3 1 1 91 3R 6077677 6077898 GACAAACCTCTGAATGAGC 58 6077953 6077971 TAACCCATTCCGATGTAGG 58 NA Drosophila melanogaster 50 nmdyn-D7 FBgn0028997 FBtr0082083 3 1 1 98 3R 5506303 5506321 ATAAACCAGGGCATGATGG 59 5506381 5506451 GTTCATAAGGACTGAAGAGGA 58 NA Drosophila melanogaster 50 CG34117 FBgn0083953 FBtr0110817 3 1 1 60 3R 5225516 5225534 AACAACAATTCTGCAAGGC 59 5225474 5225492 TAGGTCAGGTAGGTTTGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8121 FBgn0037680 FBtr0082017,FBtr0082019,FBtr0082018 2 3 3 102 3R 5161886 5161905 ATATGCTCATTGTCTTTGCC 58 5161970 5162218 TTCCTCTCGTATTCCTTGC 59 NA Drosophila melanogaster 50 CG8861 FBgn0037676 FBtr0082059 2 1 1 77 3R 5121442 5121461 ATGTTAGTGAACTGTCGACC 59 5121250 5121268 AATACGTTTGTGTCTCCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG8444 FBgn0037671 FBtr0081978 3 1 1 71 3R 5087030 5087051 GTCTGCGATATTAACTTTGAGC 59 5087345 5087363 CTCGAAATCACCAAAGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31100 FBgn0051100 FBtr0082011 2 1 1 139 3R 4825367 4825776 ATTGCTATTCGGATATGGC 57 4825246 4825264 GGTTAATGGAACTGAACCA 57 NA Drosophila melanogaster 50 Mcm2 FBgn0014861 FBtr0081827 1 1 1 60 3R 4091323 4091342 TAAAGAGTGGGTCAGTATGC 59 4091364 4091383 AAAGGATTGAAAGCGATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dsx FBgn0000504 FBtr0081760,FBtr0081761 3 2 3 73 3R 3761526 3761544 ATATTAAAGGACGCAGACG 57 3761357 3761375 TCATTCACAACGTATTGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34127 FBgn0083963 FBtr0110849 2 1 1 87 3R 3402045 3404694 AATATCGGTAGATACGACCTG 58 3401978 3401996 CGATTCCATATTGCACGTC 59 NA Drosophila melanogaster 50 CG10050 FBgn0037492 FBtr0081577 1 1 1 60 3R 3076273 3076291 GTGCAAGTACCAACTAGAC 57 3076312 3076333 CTTCAATAGAAACTCCTTGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dj FBgn0019828 FBtr0089742,FBtr0089741 2 2 2 61 3R 2885313 2885331 GTCTCTATTCACGATCCGC 59 2885356 2885374 AACTTTCGTTGCATTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Scr FBgn0003339 FBtr0081659,FBtr0081657,FBtr0081658 3 3 3 73 3R 2667000 2667018 CAATGGAAAGAAGAACCCG 58 2651400 2666963 CATTCACAGTACTCGTCCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG2336 FBgn0037455 FBtr0089748 3 1 1 69 3R 2406732 2406814 CTATCAGTCTAGAAGAGGAGG 57 2406844 2406863 TAATCAATCAGTGGAGTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10280 FBgn0037395 FBtr0078648 2 1 1 60 3R 1836839 1836857 CCTTCAACTCCCTAACGTG 59 1836797 1836815 AGGTAGTCATCTACCTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078674 1 1 5 82 3R 1587160 1587380 CAAATTCGGACATGTTATGGAG 59 1586623 1586641 GAAGACGCTTCTGGTACTC 59 NA Drosophila melanogaster 50 Xe7 FBgn0010772 FBtr0078729,FBtr0078728 2 2 2 96 3R 1493795 1493813 GTGATCCGTACCGAAAGAG 59 1493658 1493737 TCGAACTGAACATATCCTTCG 59 NA Drosophila melanogaster 50 RpL13A FBgn0037351 FBtr0078705 3 1 1 132 3R 1450615 1450633 GTTGTTATTGATGGTCGCG 59 1450729 1450747 TGTTCCTGTAGAAGTGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kkv FBgn0001311 FBtr0078798,FBtr0078800,FBtr0078799 1 3 3 99 3R 1204859 1204877 GTAAGAATTCGGTGATGGC 58 1204709 1204796 TTGTTGTTAATCGGTGCTC 58 NA Drosophila melanogaster 50 CG12000 FBgn0037314 FBtr0078805,FBtr0078806 2 2 2 76 3R 1183098 1183116 CAAGGACAGGGACTTTACC 59 1182969 1182987 TATCGCGGTAGTAAAGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12589 FBgn0040684 FBtr0078843 1 1 1 75 3R 963147 963165 ATATGGAACTGGACTTCGG 58 963090 963108 ACCAAATTCTCAGGCTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpx FBgn0041605 FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897 1 5 15 192 3R 110112 120843 ATTAAGTGCCGTTAAAGGC 58 120999 121298 GATGTTGTACTTATCGCGA 57 NA DesignRelaxed Drosophila melanogaster 50 CG32230 FBgn0052230 FBtr0070041,FBtr0070040 3 2 2 101 3L 23332708 23332726 TAATCCCGATGTCACTTGG 59 23334566 23334585 TTGGAATAATCCCTCACAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34031 FBgn0054031 FBtr0100086 3 1 1 73 3L 23178640 23178659 TATCTCTGACGGAAGTTCAG 58 23178694 23178713 CGAAGTCAACTGTTTCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SPoCk FBgn0052451 FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532 1 4 4 60 3L 22776810 22776830 GTCAATGATGATTTCCACACC 59 22776904 22776922 TGTAGAATATGCCCTTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 Aats-ile FBgn0027086 FBtr0078500,FBtr0078499 1 2 3 83 3L 22281968 22281986 GAACGTACTGCAGAAATGG 58 22282033 22282115 TAGAACGTGTATTTGGGCT 58 NA Drosophila melanogaster 50 Hem FBgn0011771 FBtr0078510 1 1 1 60 3L 22279363 22279381 ATGTTTGACGACCAATTCC 58 22279321 22279339 CTATGATGTAGCGGTTCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11306 FBgn0037108 FBtr0078422 3 1 1 81 3L 21620493 21620574 TCTCAAGAATGTACAAGTGGG 59 21620616 21620635 TGCAGAATATGATTCTCGGT 58 NA Drosophila melanogaster 50 CG5656 FBgn0037083 FBtr0078396 2 1 1 87 3L 21436826 21436948 TGTCCAAGACTTATTGCGT 59 21436757 21436775 AGATAGTTCGCCTTGATCC 58 NA Drosophila melanogaster 50 CG12977 FBgn0037052 FBtr0078321 1 1 1 166 3L 21178402 21178420 ACATCTGGAAAGAATCGCA 59 21178102 21178273 GGTAAAGGTTTGATGTCCCT 59 NA Drosophila melanogaster 50 skd FBgn0003415 FBtr0078328,FBtr0112830,FBtr0078329 1 3 3 80 3L 20989472 20989493 TTTCTAACATTCGAGGAAGAGG 59 20989354 20989431 GTCCATATGAGTGTCCCAG 59 NA Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234 2 10 10 73 3L 20826943 20826961 CAAATGCGTCAAACTGGAC 59 20827130 20827148 TGTTGCGTTTGAGTATGTC 58 NA DesignNoJunction Drosophila melanogaster 50 Pka-R1 FBgn0000275 FBtr0078258,FBtr0100238,FBtr0100240,FBtr0100237,FBtr0078259,FBtr0078260,FBtr0100241,FBtr0100235,FBtr0078257,FBtr0100234 1 10 10 72 3L 20826943 20826961 CAAATGCGTCAAACTGGAC 59 20827129 20827147 GTTGCGTTTGAGTATGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Toll-9 FBgn0036978 FBtr0078240 2 1 1 80 3L 20357490 20357509 CAACCGGTAGAAACTATACG 57 20357214 20357450 CTATAGATTGGGATGAACTTCC 57 NA Drosophila melanogaster 50 CG14184 FBgn0036932 FBtr0074872 1 1 1 148 3L 20021395 20021413 TAAGATTGTACTCGCAGCG 59 20021151 20021224 GAGCTTCATTTGAGCAGTG 59 NA Drosophila melanogaster 50 Paps FBgn0020389 FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885 1 6 6 93 3L 19853427 19853509 TAGACAGCATGGAGATCCT 59 19853566 19853584 AACTCATCCTTCCTCTTGG 58 NA Drosophila melanogaster 50 fz2 FBgn0016797 FBtr0112890,FBtr0075029,FBtr0075028 3 3 3 73 3L 19139114 19139132 AATGAACCATGAGACCCAG 59 19139059 19139077 AGCATTTGATCTCCACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 BG642378 FBgn0052203 FBtr0110771 2 1 1 60 3L 19122594 19122614 GACTTCTCTATCTGAGCAAGG 59 19122554 19122572 AATTGAAGGGCACTTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GNBP2 FBgn0040322 FBtr0075095 1 1 4 86 3L 18668073 18668332 AGTGTCCATACCAGATGAG 58 18668005 18668023 ATGTAGTCCATTAGAGCCG 58 NA Drosophila melanogaster 50 sina FBgn0003410 FBtr0075332,FBtr0075333 3 2 2 90 3L 16850362 16850380 CAATTCACAACTCGGACTG 58 16850433 16850452 GATATGGTCACGTTAATGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4877 FBgn0036624 FBtr0075386,FBtr0075387 2 2 2 83 3L 16382651 16382671 ATCTGCTAGATAGCAATCCAG 59 16382716 16382792 CCATGTCCTGGTTACTGTC 59 NA Drosophila melanogaster 50 Notum FBgn0044028 FBtr0075436,FBtr0075435 1 2 2 83 3L 16023316 16023335 GGATACCGACTATATCCCAC 58 16023445 16023463 ATTATCCACTCGCATTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG18081 FBgn0036537 FBtr0075537 3 1 1 63 3L 15827849 15827867 GAAGGCACTTGTCTATGTG 58 15827522 15827540 CTTGTAAGTCTTCGGATCG 57 NA DesignNoJunction Drosophila melanogaster 50 CG7304 FBgn0036527 FBtr0075576 1 1 2 86 3L 15673901 15673978 AATCAAGGAACCTGAAACG 57 15674028 15674046 TATTCAGGAGATGTGGCTG 58 NA Drosophila melanogaster 50 CG7656 FBgn0036516 FBtr0075594,FBtr0075592,FBtr0075593 1 3 3 62 3L 15580353 15580371 GACTATCCATACTCACCGC 59 15580309 15580327 GTAAACATTCGGATGCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13454 FBgn0036503 FBtr0075603 3 1 1 67 3L 15510070 15510090 GAGGATATGTTCAAGGAAGTG 58 15510023 15510041 GAGAAATCCTCGTTTCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5392 FBgn0036463 FBtr0075671 3 1 1 62 3L 15004308 15004329 GCTGTGGAATCTATAAGATCAC 58 15001065 15001083 GACCTGATTGCAACATGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10738 FBgn0036368 FBtr0075805 2 1 2 133 3L 13458084 13458162 ATCATCGCTATCACAGTGAC 59 13458258 13458276 AATACTTTGGCAGGACAGG 59 NA Drosophila melanogaster 50 CG10732 FBgn0036365 FBtr0075851,FBtr0075852 3 2 2 201 3L 13437395 13437475 CATTAAGCGAGATGAGCGA 59 13437640 13437658 TCGTTAAGGTGAGTCTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG14107 FBgn0036351 FBtr0075866 1 1 1 60 3L 13373761 13373780 AGAGGAAACTCCATCTACAG 58 13373720 13373741 CTTCTTGTTATCCTCGATTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SRm160 FBgn0036340 FBtr0075883 1 1 1 252 3L 13031739 13031757 TATTCTCGCTCTCCAAGAC 58 13032043 13032061 TATAGCGATTCTGTTGCGG 59 NA DesignNoJunction Drosophila melanogaster 50 RpS12 FBgn0014027 FBtr0075878,FBtr0075880 2 2 2 60 3L 13016618 13016842 GTTGATGTTGATGTTCCCT 57 13016866 13016884 CAGTGTTAATGTCCATGGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG10948 FBgn0036317 FBtr0075939 2 1 3 111 3L 12841550 12841568 ATGTACGAAGACTCCATGC 59 12840244 12841476 TCAATCTGAGTGAATTGCGT 59 NA Drosophila melanogaster 50 CG14126 FBgn0036223 FBtr0076068 3 1 1 65 3L 11930167 11930185 TTGGACACCTAACAACCAG 59 11930120 11930138 AACAGTGCTTGATATGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7264 FBgn0036214 FBtr0076035 2 1 1 81 3L 11822600 11822618 GGAGCAGTACGAAGATGAG 59 11822719 11822737 ATCCAGCATTTCTAGGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11597 FBgn0036212 FBtr0076080 3 1 2 119 3L 11814982 11815000 TATAAGGGATTTGAGCCGC 59 11814530 11814550 CATCTCTATTCTTAAGTCGGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG11658 FBgn0036196 FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127 1 5 5 86 3L 11694639 11694657 AACAAGGGTATTGCCAGTC 59 11694509 11694589 GCTGTCATTTACATGCGAG 59 NA Drosophila melanogaster 50 CG7557 FBgn0036159 FBtr0076174,FBtr0076175 3 2 2 61 3L 11439449 11439467 CAGGAAGCTATGAAGACCG 59 11439492 11439510 TGTAGTAACAGCAATCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6149 FBgn0036158 FBtr0076180 3 1 1 60 3L 11427947 11427965 TGTCCTTATCATGGTCCTC 58 11427905 11427923 GACGTTATTAACTCGCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18490 FBgn0036149 FBtr0076167,FBtr0076166 2 2 2 166 3L 11219659 11219744 GATGCGTCAGTAAACAAGC 59 11219872 11219892 GGTATTTCATCAACGTCATCG 59 NA Drosophila melanogaster 50 CG32082 FBgn0052082 FBtr0076216,FBtr0113423,FBtr0113422 3 3 3 109 3L 11152568 11152586 AGTGGATACAGTACCAGCA 59 11152659 11152872 TCCTTAATTCGTTCCAGGC 59 NA Drosophila melanogaster 50 Mocs1 FBgn0036122 FBtr0076206,FBtr0076205,FBtr0076204 1 3 3 109 3L 11064200 11064218 TTTCTCTAACCGAACGCTG 59 11064720 11064738 TAGACGAAGGATTTCCTCG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 SuUR FBgn0025355 FBtr0076203 3 1 1 83 3L 11059301 11059320 AAGGAGGTATTCAGTAAGCG 59 11059364 11059470 ACGAAAGTCCTTGATGTACTC 59 NA Drosophila melanogaster 50 CG6685 FBgn0036062 FBtr0076355 2 1 1 87 3L 9960874 9960945 CATTGACTTGAATGAGGCC 58 9960805 9960823 AAATTCTTTGGTCGCATCG 59 NA Drosophila melanogaster 50 CG3335 FBgn0036018 FBtr0076383 2 1 1 66 3L 9619736 9619754 ATAGATGGTAATCCCGTGG 58 9619842 9619860 CGCCATCATTATCTTGGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG32043 FBgn0052043 FBtr0114368,FBtr0076465,FBtr0114367,FBtr0076466 1 4 4 107 3L 9463441 9463459 AATTCGCTCGATATCTGGG 59 9463530 9463670 CCTTCGTGTAGATTTCCGT 59 NA Drosophila melanogaster 50 MTF-1 FBgn0040305 FBtr0113323,FBtr0113322,FBtr0113324,FBtr0076460,FBtr0076459 2 5 5 189 3L 9429057 9429075 ATACGAATGTGAGGTGTCC 59 9429335 9429354 ATCTTCCGGACATTTGTAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 bol FBgn0011206 FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538 3 4 4 131 3L 9101077 9101097 ATATACCCATGGATCAGTTCG 59 9100463 9100724 TGGTGGGTACATTCATTGG 59 NA Drosophila melanogaster 50 CG13315 FBgn0040827 FBtr0076530 3 1 1 180 3L 9090126 9090144 GTGAACCATTTGATCGGAG 58 9090288 9090306 AGCTGCGATCATAGTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076777,FBtr0076779,FBtr0076780 2 3 8 164 3L 7811314 7813097 AAATCAAACGGCAAATCCAC 59 7811169 7811187 TTGTGTTACCTTGAGGTCG 59 NA Drosophila melanogaster 50 Cpr65Ec FBgn0035737 FBtr0076909 3 1 1 64 3L 7086534 7086553 GAGACTCGCGAGTATAAGAG 59 7086580 7086598 GACGTCTGGTACTGATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Glu-RI FBgn0004619 FBtr0076982 1 1 1 137 3L 6626307 6626327 GAAAGAGAACGGGTTATAGAC 57 6626425 6626508 CACGCTTATCCAAATTTCCT 58 NA Drosophila melanogaster 50 CG8368 FBgn0035707 FBtr0076976,FBtr0076977 1 2 2 60 3L 6600659 6600678 GGATCACCGACTATCTAACC 59 6600698 6600719 GTCACTTGCTCCATAATTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr65Au FBgn0042119 FBtr0077060 1 1 1 103 3L 6125048 6125068 GGGCGATAAATATTCCTTTGC 59 6124623 6124641 CAGACAAGGAACCATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13712 FBgn0035570 FBtr0073364 2 1 1 263 3L 4709828 4709847 TATTCCAGCTACAGCAACTG 59 4709584 4709602 TCTGTCCCTATATTCCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11347 FBgn0035542 FBtr0073294,FBtr0073297,FBtr0073295,FBtr0113140,FBtr0073296,FBtr0113141 3 6 6 227 3L 4419446 4419464 GTATTAGGTCCACCCAGGA 59 4419654 4419749 TGTTCTTGCTCTTCTGACTC 59 NA DesignRelaxed Drosophila melanogaster 50 Ero1L FBgn0028736 FBtr0073216,FBtr0073217 1 2 2 139 3L 4173146 4173167 AAGATTCTCTACTCAGAGAAGC 59 4173267 4173346 TTGGATAGTCTGCCAAACG 59 NA Drosophila melanogaster 50 mas FBgn0011653 FBtr0073260 2 1 1 80 3L 4162760 4162780 CAATATCTATGTGGAGCTGCT 59 4162642 4162718 GGAACGAACAATGTTGGTC 59 NA Drosophila melanogaster 50 Gr64e FBgn0045476 FBtr0073199,FBtr0073200 1 2 2 94 3L 4034471 4034489 TCTGAAGTTGCCCAAAGAG 59 4034547 4034625 TCATAATGTGCTCCACCAG 59 NA Nonspecific Drosophila melanogaster 50 CG15878 FBgn0035316 FBtr0072911 2 1 1 68 3L 2211098 2211116 CTGGTCGGAAGTATAGCTG 59 2211048 2211066 TTATTCTGTCTTTGGCGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8960 FBgn0035315 FBtr0072872,FBtr0072871 3 2 2 73 3L 2197821 2197839 TAACCTCCCAACCAAATCG 59 2197876 2197894 GGGCAACTAACTAATTGGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG18170 FBgn0035239 FBtr0100190,FBtr0100191 2 2 2 72 3L 1603341 1603359 AACAAATAGACTCGCAACC 58 1603395 1603471 GTTGTGGTTCCTATCGAGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG9173 FBgn0035218 FBtr0072720 2 1 1 60 3L 1422150 1422171 GATTATCTCAACAAACTGTGGG 59 1422111 1422129 GCACATACGATGGATTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ptp61F FBgn0003138 FBtr0072716,FBtr0072717,FBtr0072719,FBtr0072718 2 4 4 144 3L 1346060 1346078 AGAAACAGATCAAGTGCCA 59 1345856 1345953 TCGGTTAATTTGAACCATCG 58 NA Drosophila melanogaster 50 Myo61F FBgn0010246 FBtr0072675,FBtr0072673,FBtr0072672,FBtr0072674 1 4 4 83 3L 1326066 1326084 TCCTCGAGAACTACCAGAG 59 1326127 1326210 CAATGTAGGTATAGATCAGGTCC 59 NA Drosophila melanogaster 50 CG9134 FBgn0035199 FBtr0072661,FBtr0072660,FBtr0072659 3 3 3 105 3L 1269165 1272973 CTTCTTCAAGGCAAACTGG 58 1273042 1273060 GTGCTTCTCCAGTCTATCG 59 NA Drosophila melanogaster 50 CG33229 FBgn0053229 FBtr0072499 2 1 1 195 3L 224469 224487 CATTCAAACACGGTTTGTG 58 224646 224664 GTTGTTGCATGTGTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pyx FBgn0035113 FBtr0072525,FBtr0072524 2 2 2 105 3L 219642 219727 AAATGTTCACAAAGGTGGC 59 219555 219575 GGATAATCATTGAAGAGCACG 59 NA Drosophila melanogaster 50 CG7049 FBgn0035102 FBtr0072537 2 1 1 60 3L 175335 175353 ACGTAAATGACGTTAGCGA 59 175293 175311 TGACACAGATAAGAACCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-3378 FBgn0082963 FBtr0113518 3 1 1 67 2R 17217229 17217248 GATTGCTAAACTAGCATGGC 59 17217277 17217296 TAGTATGCGGCATTATAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30428 FBgn0050428 FBtr0072451 2 1 1 98 2R 21141567 21141585 AACTGACCAAGACGATTCC 59 21141695 21141714 CTATGCTCTAACTGACCACC 59 NA DesignNoJunction Drosophila melanogaster 50 RpL19 FBgn0002607 FBtr0072406,FBtr0072405 2 2 2 63 2R 20856643 20856661 AGATCGCTAACACAAACTC 57 20856532 20856550 TTGATGATCAGACCATCCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG3663 FBgn0035044 FBtr0072323 2 1 1 98 2R 20549494 20549513 GAGGATGTCGTGCTATATGG 59 20549631 20549649 GTCCGCCACTATGTATACG 59 NA DesignNoJunction Drosophila melanogaster 50 ken FBgn0011236 FBtr0072129 3 1 1 87 2R 19762609 19762683 GTTGATAAGGAACCTGCTG 58 19762732 19762752 CTTAAAGTAGGTGGCATTCAC 58 NA Drosophila melanogaster 50 apt FBgn0015903 FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067 2 5 5 84 2R 19484451 19484469 TTTATGAAGATTGCCGCCA 59 19484516 19484597 TGTACTGTGTCATTTCCGTC 59 NA Drosophila melanogaster 50 CG30190 FBgn0050190 FBtr0071950 1 1 3 145 2R 18817594 18817731 CAACTACAACATTCGCAGC 59 18817840 18817927 TCATCTCTTCCAGCAACTC 58 NA Drosophila melanogaster 50 Obp59a FBgn0034766 FBtr0071869 2 1 2 60 2R 18590573 18590595 GAGATGAATATGGTAGGTGATCC 59 18590614 18590633 GCTTCTCTGAAGGATTTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Act57B FBgn0000044 FBtr0100177,FBtr0071519 2 2 2 60 2R 16832500 16832519 TATCCTCACCCTGAAATACC 58 16832541 16832560 CTCCATATCATCCCAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9235 FBgn0034560 FBtr0071517 2 1 1 60 2R 16797304 16797323 GCTCGCTAGAAGACATATCC 59 16797346 16797364 GCCAGGATGAATTTGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp57a FBgn0043535 FBtr0086294 3 1 1 60 2R 16392892 16392913 CGACAATTTGGATAATGTCCTC 59 16392933 16392952 CTTAATGTTGCACTTGTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8929 FBgn0034504 FBtr0086283,FBtr0086285,FBtr0086284 1 3 3 80 2R 16217662 16217743 ACCTGAAGGACTATATCAAGTG 59 16217783 16217802 AGTACTCATAGTAGCGTTCC 58 NA Drosophila melanogaster 50 CG11048 FBgn0034487 FBtr0086316 1 1 1 103 2R 16128865 16128884 TACTTACAAGCTGCGATCAG 59 16129017 16129035 CGGTCGAATATCACTTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 sm FBgn0003435 FBtr0086493,FBtr0086492,FBtr0100233,FBtr0086495,FBtr0110898,FBtr0100232,FBtr0086494 1 7 7 151 2R 15418201 15419688 TATTGAGGGTAAAGGCACC 58 15418068 15418088 CTCAATTGTAGATGTCCACCT 59 NA Drosophila melanogaster 50 CalpA FBgn0012051 FBtr0086529,FBtr0112869 2 2 3 111 2R 15315957 15315975 TGGTCACTACCTGATTGTG 58 15316047 15316760 CACATGATCATCATTCTCTTCC 58 NA Drosophila melanogaster 50 CG15072 FBgn0034376 FBtr0113095,FBtr0113094,FBtr0086604 2 3 3 80 2R 14588756 14588831 GAGCTGCAAAGCTATATGC 59 14588875 14588893 ATGTGCTACGGATAGATCC 58 NA Drosophila melanogaster 50 Gint3 FBgn0034372 FBtr0086656,FBtr0086654,FBtr0086655 2 3 3 106 2R 14546145 14546222 ATGACTGCAAACTCATTCC 58 14546057 14546075 CAGCATTAGAAGGTCTTCC 57 NA Drosophila melanogaster 50 CG30116 FBgn0028496 FBtr0086721,FBtr0086719,FBtr0086720,FBtr0086718 2 4 4 80 2R 14363162 14363624 GATTATCGCCTTATGAACGTG 59 14363102 14363120 CGATTGAAAGGCTTGTTCC 59 NA Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 1 8 8 97 2R 14032395 14032483 AGGAAAGAATTCTGAGAAGC 57 14032543 14032561 CAATCATCGGATACAGACG 57 NA Drosophila melanogaster 50 CG10931 FBgn0034274 FBtr0089545 3 1 1 71 2R 13637258 13637276 AACACCCTTAGGCTATGGA 59 13637311 13637329 GAACTCATTCAAATGCCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10931 FBgn0034274 FBtr0089545 1 1 1 60 2R 13637207 13637225 TATGTGAAGTTCTCACCGA 57 13637248 13637267 TAAGGGTGTTGTTCAATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab4 FBgn0016701 FBtr0086830,FBtr0086831,FBtr0086829 3 3 3 93 2R 13461207 13461296 TCGGAAACATACGATTACCTG 59 13461351 13461369 ACTTGCTCTCGATGAAGTG 59 NA Drosophila melanogaster 50 Ngp FBgn0034243 FBtr0086906 3 1 1 84 2R 13454602 13454623 CTATTCTTAGTGCCGAATATCC 58 13454481 13454499 AATAGATTGATGAGCGCAC 57 NA DesignNoJunction Drosophila melanogaster 50 mbl FBgn0053197 FBtr0086993 1 1 4 184 2R 13163393 13163411 TCAATATGAACAGCCTGCT 58 13163557 13183348 TGTACATACCTTGATGCTGTC 59 NA Nonspecific Drosophila melanogaster 50 CG34191 FBgn0085220 FBtr0112384 3 1 1 62 2R 12839795 12839814 TTAAGGTGCTTAGTGTTCCG 59 12839839 12839857 CTTCAGAGGCGAATTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5522 FBgn0034158 FBtr0087028,FBtr0087027,FBtr0087031,FBtr0087029,FBtr0087030,FBtr0087026 1 6 6 81 2R 12676157 12676301 CTACTACACTATAGCAGCCTC 58 12676344 12676362 ATCCAACTGCTTGATGGAG 59 NA Drosophila melanogaster 50 Vkor FBgn0053544 FBtr0091510 3 1 1 61 2R 12666170 12666189 TATCCTGTACTTCTTGAGCT 57 12666268 12666286 CTATCAATTGGACCAGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 Dg FBgn0034072 FBtr0087258,FBtr0087257,FBtr0087256 3 3 3 132 2R 11972593 11972678 TTTATGGCCTACCTCTGGA 59 11972479 11972497 TTAATGGTCCTAACCGCTC 59 NA Drosophila melanogaster 50 CG12963 FBgn0034031 FBtr0113082 3 1 4 81 2R 11443855 11443932 TGATAAGGGCCTATATCTGTC 58 11443974 11449329 ACATTACGATCAGATTCGTG 57 NA Drosophila melanogaster 50 GalNAc-T1 FBgn0034025 FBtr0087332,FBtr0087331 1 2 2 60 2R 11401756 11401906 GACTTCCATCCTTACAAATTCC 59 11401927 11401945 TGCGGGCAGTATTAATACC 59 NA DesignRelaxed Drosophila melanogaster 50 Arf51F FBgn0013750 FBtr0087377,FBtr0087375,FBtr0087379,FBtr0087376,FBtr0087378 3 5 5 190 2R 11211471 11211489 TAAGATTCGACCGCTATGG 58 11211643 11211715 GTTTCATTGCATCAGGCAG 59 NA Drosophila melanogaster 50 CG33505 FBgn0053505 FBtr0091445 2 1 1 118 2R 10747041 10747060 GGAAGATCACAGAGGAATCG 59 10746885 10746960 TAAACCGATTGCTCCATCC 59 NA Drosophila melanogaster 50 Aats-phe FBgn0020766 FBtr0087594 2 1 1 63 2R 9856296 9856316 GCTATTACATCAATCAGCAGC 59 9856341 9856359 ATCAATTCCACCTGATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17041 FBgn0033822 FBtr0087749,FBtr0113080,FBtr0087750 3 3 4 158 2R 9150200 9150218 TACTCGAGATCAACGAGGA 59 9150451 9150469 TCACAATCGACTTCTCCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4679 FBgn0033816 FBtr0087759 2 1 1 60 2R 9125407 9125425 GCCCAACATCTACATACCC 59 9125365 9125388 GATCTCAATAGCTCTTAGGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PR2 FBgn0013955 FBtr0087777,FBtr0087776 1 2 2 85 2R 9036510 9036531 GTGAAACCTATTTCTGTGAAGG 59 9036384 9036464 TCAATCATCGACCTAGCAC 59 NA Drosophila melanogaster 50 Cpr49Ae FBgn0033728 FBtr0087920 2 1 1 94 2R 8291004 8291680 ACAACTATGCCTATGAGACG 59 8291737 8291755 GATGATCACGTCACTGGAG 59 NA Drosophila melanogaster 50 CG30039 FBgn0050039 FBtr0088023 2 1 1 61 2R 7938837 7938855 GCAAGGATCCATAAACGGA 59 7938794 7938812 CACTTGGTACAGTTCACAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30038 FBgn0050038 FBtr0088057 1 1 1 120 2R 7784025 7784108 CAATCGAGATTTGTCGTACAG 59 7783925 7783943 ATATTGTTGAACTGCACCG 58 NA Drosophila melanogaster 50 CG30033 FBgn0050033 FBtr0088117 2 1 1 101 2R 7180097 7180115 GATCATCACTCCGTCACTG 59 7180239 7180257 AATATTGGACCCACTACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9084 FBgn0033582 FBtr0088197 1 1 1 243 2R 7105641 7105719 TTAACGATGCCCTAACAGG 59 7105416 7105437 GGTGGTATCCAAATTTCTAGAC 58 NA DesignRelaxed Drosophila melanogaster 50 lola FBgn0005630 FBtr0089345,FBtr0089343 3 2 26 189 2R 6419761 6419779 GTTGAGGATTTGACACTGG 58 6393564 6419548 GCGTAATACTCAGATCTTGG 57 NA Drosophila melanogaster 50 CPTI FBgn0027842 FBtr0088308,FBtr0088307 3 2 2 117 2R 6357801 6357882 AAATACAACCAACGATGAGC 58 6357703 6357721 ATACAGGCAGAACAGATGC 59 NA Drosophila melanogaster 50 Caf1-105 FBgn0033526 FBtr0088310 2 1 1 60 2R 6355482 6355500 GGATCCGTGGATAACACAG 59 6355440 6355458 GAATAGCCAGTGATTTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33475 FBgn0053475 FBtr0088318 2 1 1 60 2R 6298483 6298503 GATATCCAAGGTTTACTCGGT 59 6298443 6298462 TCTAAATACCGTGGAATTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eve FBgn0000606 FBtr0088390 2 1 1 122 2R 5867148 5867166 ATAACTCCTTGAACGGCAG 59 5867251 5867270 AGTTCTCCTTGTAGAACTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mef2 FBgn0011656 FBtr0088443,FBtr0088445 2 2 6 170 2R 5806555 5806941 CCTGATAATTTATCCATCGGG 58 5806290 5806308 CTTAGATTGGAAGCTCGTC 57 NA Drosophila melanogaster 50 CG1773 FBgn0033439 FBtr0088467 1 1 1 85 2R 5594446 5594539 CTTTAAAGATCACATACGACCC 58 5594585 5594603 CCATGTAGGATTGTCCCAG 59 NA Drosophila melanogaster 50 CG30002 FBgn0050002 FBtr0088466 2 1 1 155 2R 5592562 5592655 CTTTAAAGATCACATACGACCC 58 5592769 5592789 TCAGTTCTTATATCCACCTCC 58 NA Drosophila melanogaster 50 CG8008 FBgn0033387 FBtr0114598 1 1 2 80 2R 5048394 5048415 AGTGATATTCCACTACAACGAG 59 5048267 5048355 GTCTCAATGGCATTGATTTCC 59 NA Drosophila melanogaster 50 CG8709 FBgn0033269 FBtr0088815 3 1 2 200 2R 4026691 4026709 TTAAGATCGCCTGTCTGTC 59 4026084 4026448 GATTGATGTAGCCAGAGGAC 59 NA Drosophila melanogaster 50 cathD FBgn0029093 FBtr0088898 1 1 1 69 2R 3710079 3710100 CCTCTATTAACCAGAAGATTGG 57 3709968 3709986 ATGAGATCGCAAGAAACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1553 FBgn0033224 FBtr0088902,FBtr0088901,FBtr0088900 3 3 3 123 2R 3690702 3691032 GATATTTCCGAGACTTCATCG 58 3690599 3690617 CAAAGGCCATCACATTGTC 59 NA DesignRelaxed Drosophila melanogaster 50 U2A FBgn0033210 FBtr0088941 2 1 1 60 2R 3563682 3563701 CAATACATAAACCCATGCCG 59 3563641 3563660 TTTGTGGAATCTTATAGCCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30495 FBgn0050495 FBtr0088920 2 1 1 86 2R 3545173 3545251 GCAGAGAACTTCAAGAAAGAG 58 3545299 3545317 TTTCGTCAATCTATGCGGT 59 NA Drosophila melanogaster 50 Rpt1 FBgn0028687 FBtr0088947 3 1 1 60 2R 3540082 3540103 AAGAAGGTTATCAAGAGCTACG 59 3540043 3540061 AGTTGTAGGTCATGTAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15237 FBgn0033104 FBtr0086212 3 1 1 144 2R 2696942 2696960 CATACCCGGAATTGAGACC 59 2696749 2696767 GTTCATCTGAATGTCGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7856 FBgn0033056 FBtr0086024 1 1 1 60 2R 1946083 1946102 AGATTTCTACCGATCAGGAG 58 1946042 1946060 CGATTTCTGGAAGTAGGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12547 FBgn0040521 FBtr0111273 1 1 1 75 2R 674664 674682 AAAGGTTATGCCTGTCGTC 59 674545 674563 TAGTCTACCGTCAATGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17683 FBgn0040002 FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300 1 4 5 80 2R 19474 19550 AATCACTTCAGTTGAGGTGG 59 19590 19611 CAGTCTAAATCAAGGAGATCGT 59 NA Drosophila melanogaster 50 l(2)k14505 FBgn0021856 FBtr0081482 2 1 1 114 2L 21261706 21261781 TCTTCCAGTACGATGACGA 59 21261859 21261877 ATGTTCATGGTCTTCTGCA 59 NA Drosophila melanogaster 50 Nhe2 FBgn0040297 FBtr0081467,FBtr0081466 2 2 2 80 2L 21121223 21121588 CAGAGATCTTAAGGGAGCTG 59 21121629 21121649 CTCATAACTTCCATAGCATCG 58 NA Drosophila melanogaster 50 fbp FBgn0032820 FBtr0081321,FBtr0081322 1 2 2 80 2L 19762535 19762556 TCCTATACCACATGTCTAATGG 58 19762294 19762496 GATGTATTTGCCCTGTTTCTC 59 NA Drosophila melanogaster 50 CG10237 FBgn0032783 FBtr0081207,FBtr0081209,FBtr0081208 3 3 3 93 2L 19437120 19437677 GTCTTCTAGAAGCGGAGAC 59 19437045 19437063 CTTTCCGGGTAATACTTGC 58 NA Drosophila melanogaster 50 Catsup FBgn0002022 FBtr0081143 3 1 1 60 2L 19043010 19043029 CCACTATCACTATTCTGCTG 57 19043051 19043070 ATAAGAATGGCAAAGTCACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hk FBgn0001202 FBtr0081180 3 1 1 78 2L 19032465 19032484 AACAAGATACCGATCTGCTG 59 19032353 19032371 TTCAGTGTGGTCACTTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31788 FBgn0051788 FBtr0081056 3 1 1 66 2L 18257754 18257772 GAGTCTTTCGATTGGACCT 58 18257706 18257724 TTACTACACGCTGTTTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TepI FBgn0041183 FBtr0080811 1 1 1 81 2L 15891398 15891416 GTGATCCTAACAAATGCGA 57 15891219 15891301 CAGTACAATTAGTGTAACCAGG 58 NA Drosophila melanogaster 50 CG15254 FBgn0028949 FBtr0080783 1 1 1 60 2L 15614166 15614185 ACAAGTACGACAATGAAACC 58 15614125 15614146 AGTACACTGGAGTAATCATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34165 FBgn0085194 FBtr0112356 2 1 1 102 2L 14714007 14714025 GAACGATTTGAAGGTGGTC 58 14714091 14714109 CTCTGAAGATGACACCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16885 FBgn0032538 FBtr0080558 2 1 2 164 2L 13933467 13933485 CACCTATCCCGTTAAGGTG 59 13933321 13933339 GTGTAGGGACGATCAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31814 FBgn0051814 FBtr0080580 2 1 1 80 2L 13684543 13687536 GATATGATCATATCGGACACCT 59 13684484 13684503 CATGTACTTTGTGTAACCGC 59 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090023,FBtr0090026,FBtr0090022,FBtr0090029,FBtr0090025,FBtr0090014,FBtr0090024 3 8 17 186 2L 12724032 12724051 CGTGTTAAGTTGATGAACGA 58 12724335 12724774 CTAATGAAACCAGGAACGG 58 NA Drosophila melanogaster 50 CG31704 FBgn0051704 FBtr0080273 2 1 1 71 2L 11840775 11840793 GTATTCCAGTACTCCTGCC 59 11840828 11840846 ACTATAGGTCACGGAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16833 FBgn0026147 FBtr0080151,FBtr0080152,FBtr0080150 3 3 3 81 2L 10992858 10992876 GGTTACATCAGTGAATCCC 57 10992920 10993011 TTTAGCGCTGTACTTTACTG 57 NA Drosophila melanogaster 50 CG33129 FBgn0053129 FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172 1 4 4 118 2L 10966083 10966101 GATCAAGACCACCTGTGAC 59 10965901 10966002 ATTGGTCAATGAACTTTGCC 59 NA Drosophila melanogaster 50 rho-5 FBgn0041723 FBtr0089855 1 1 1 89 2L 10369522 10369601 TGTGCTCTCAGATATCGTG 58 10369451 10369469 TGAGCAATCGGTATAGCTG 59 NA Drosophila melanogaster 50 CG31709 FBgn0051709 FBtr0079856 1 1 1 80 2L 9579139 9579158 GACTTACTACAGGGAACAGG 59 9579017 9579099 CTAAGCTTAAATAATACCGCCC 58 NA Drosophila melanogaster 50 Oatp30B FBgn0032123 FBtr0079827,FBtr0079828,FBtr0079826,FBtr0079825 2 4 4 83 2L 9537728 9537811 GCATATGGATTATTGCTACGAC 59 9537854 9537873 TTCTTAGACTTGGTCTGTGG 58 NA Drosophila melanogaster 50 CG34182 FBgn0085211 FBtr0112375 1 1 1 60 2L 9437055 9437073 CCCAAGATGCAATTCATGC 59 9437097 9437115 AATCCACGATATCTCCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL51 FBgn0032053 FBtr0079696 1 1 1 60 2L 8516806 8516827 ATCCTCTACTTGTACAAGTTCC 59 8516767 8516786 TTTACTGATGTGAATAGCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fu12 FBgn0026718 FBtr0079704,FBtr0079703 1 2 2 61 2L 8450266 8450284 CTCATTCATGGATGACGAG 57 8450223 8450241 GTAGGATGTGGATTAGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Akap200 FBgn0027932 FBtr0079666,FBtr0079665 2 2 4 70 2L 8428059 8430290 CAAATTGAGGTGGATCTCG 58 8430324 8430342 TCCTGTGTTGTAACGTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 Acp29AB FBgn0015583 FBtr0079716 3 1 1 62 2L 8392868 8392886 TCAAGATGAGACGATTCGA 58 8392824 8392845 GCATTAGATTCTTCTCGATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8360 FBgn0032001 FBtr0089935 3 1 1 151 2L 8213438 8213456 GATGGCACCATATACTCCG 59 8213822 8213840 GTGAAGCCATTATCCTGCT 59 NA DesignNoJunction Drosophila melanogaster 50 Cka FBgn0044323 FBtr0079536,FBtr0079539,FBtr0079537,FBtr0079538 2 4 4 99 2L 8036253 8036272 AACATCAATGGAAACGAGAG 58 8036391 8036411 CCACGATTATTTCATCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 Slob FBgn0024290 FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518 2 4 4 80 2L 7649009 7649027 TGAGGACTTAGTCCTTTGC 58 7648879 7648968 GGCTTAATTGTACTGAAACAGG 59 NA Drosophila melanogaster 50 Rapgap1 FBgn0085403 FBtr0112604,FBtr0112605,FBtr0112603,FBtr0112606 1 4 4 93 2L 7499876 7499897 GGATAAATTCAGTGTGAACACG 59 7499746 7499824 ACTGCAGGTATTTAGATTGGG 59 NA Drosophila melanogaster 50 osm-6 FBgn0031829 FBtr0079333 1 1 1 125 2L 6556352 6556426 TCAATGATGTGGAGCTGAG 59 6556245 6556264 CAAACATCTGCTTGAAGTCC 59 NA Drosophila melanogaster 50 Hsp60C FBgn0031728 FBtr0079111,FBtr0079112,FBtr0079110 1 3 3 60 2L 5669869 5669887 CAATCGCAAGGAGAATCTG 58 5669911 5669929 GTCTCCAAACACGATTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hoe1 FBgn0041150 FBtr0077395,FBtr0077398,FBtr0077397,FBtr0077399,FBtr0077400,FBtr0077396 2 6 6 106 2L 4909615 4909687 CATTCTATGGGTTTCCGCT 59 4909527 4909546 GATTCAAGGTGCTATTCTGC 58 NA Drosophila melanogaster 50 morgue FBgn0027609 FBtr0077457 3 1 1 61 2L 4443364 4443384 CTGTTCATATACTTCCCGGAG 59 4443323 4443341 TTGGTGAGGAAACGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 morgue FBgn0027609 FBtr0077457 1 1 1 60 2L 4443364 4443383 TGTTCATATACTTCCCGGAG 58 4443323 4443341 TTGGTGAGGAAACGTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Shaw FBgn0003386 FBtr0089274,FBtr0089275 1 2 2 80 2L 3721575 3721650 GCTCAACTATTACAGAACTGG 58 3721692 3721710 CAGAACTCCAATTCCTCCT 58 NA Drosophila melanogaster 50 drm FBgn0024244 FBtr0077531,FBtr0077530 3 2 2 79 2L 3545739 3545757 TGAGATCACCTATTCGTGC 59 3545800 3546741 ACTGACTACATCTGTGCTG 58 NA DesignRelaxed Drosophila melanogaster 50 Rbp9 FBgn0010263 FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635 2 7 7 83 2L 2963121 2963234 CAATCTGTTAAGGTGATTCGTG 59 2963278 2963296 AGCCTCTTCGTAATTCGTC 59 NA Drosophila melanogaster 50 CG18557 FBgn0031470 FBtr0077689 2 1 1 61 2L 2845571 2845589 GAATGCTATTTCTTGGCCG 59 2845528 2845546 TTTGAGAACTGTGACAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15394 FBgn0031439 FBtr0113016 1 1 1 73 2L 2592183 2592201 ATTTCTGTTCATGTGGGCT 59 2592297 2592315 TTACGTACGAGGTCTTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 lea FBgn0002543 FBtr0077941 2 1 1 101 2L 1397132 1397150 TTCAATGGTTTAAGGACGG 57 1395993 1397067 GTGAGTGGATAACCTTGAG 57 NA Drosophila melanogaster 50 Tgt FBgn0031321 FBtr0077971 3 1 1 67 2L 1184463 1184481 TCGAGACACTGAAGAAAGC 59 1184512 1184530 ATCTGTTAGAATGGCCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089429,FBtr0089430,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437 3 6 10 141 2L 110859 110877 TATGATGACTCCTCCAAGG 57 112011 112699 ACATGATACCCTGATCTCC 57 NA Drosophila melanogaster 50 l(1)G0196 FBgn0027279 FBtr0077355,FBtr0077356,FBtr0112508,FBtr0077357,FBtr0077354 3 5 5 83 X 21898310 21898330 CATATTTCGGTGCATGTATCC 59 21898374 21898508 GAGTGCAATCTTAGCAAACC 59 NA Drosophila melanogaster 50 para FBgn0003036 FBtr0111022,FBtr0074298,FBtr0111023 2 3 3 80 X 16407799 16407817 TCATCACCACAATTCTCGT 58 16403727 16407756 TGAATATCACCTCAGTGGAC 58 NA Drosophila melanogaster 50 l(1)G0168 FBgn0027287 FBtr0074042,FBtr0074043 2 2 2 84 X 15401623 15403765 GAAGTGGAGAGCCTAAAGG 59 15403813 15403831 TGTCAATCTTGTCCGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 LIMK1 FBgn0041203 FBtr0073660 2 1 3 87 X 12483191 12483299 GCGCCTTATAGAATTGATGTG 59 12483124 12483143 ACGAATCACTAACTGGTGTG 59 NA Drosophila melanogaster 50 Gr10b FBgn0030297 FBtr0073550 3 1 1 88 X 11306093 11306209 TACAGACAGTGGGAAATGTC 59 11306024 11306043 ATATCCATTCGAAACATGCC 58 NA Nonspecific Drosophila melanogaster 50 dlg1 FBgn0001624 FBtr0073483,FBtr0073492,FBtr0073491 2 3 12 180 X 11276005 11281814 ATAGCTGATAATCAGCGCA 58 11281958 11282028 GTATCTGTGAAGTCTGGGA 57 NA Drosophila melanogaster 50 CG12645 FBgn0030181 FBtr0112973 3 1 2 212 X 10047978 10048055 GATTTCTTTATCCTAAGCCCG 58 10048463 10048481 GTAATGATTCGTTGTCCGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG34028 FBgn0054028 FBtr0100083 1 1 1 60 X 9405636 9405726 GTAAACAAACGTGGACATATCG 59 9405746 9405765 AACGATTCATTATTGGTCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sn FBgn0003447 FBtr0071101,FBtr0071100,FBtr0071102 3 3 3 84 X 7879377 7879472 GGATCTGCATAAGATCGCA 59 7879520 7879538 GAATCGGTTCCATCATCCA 59 NA Drosophila melanogaster 50 hdm FBgn0029977 FBtr0071133 1 1 1 88 X 7813103 7813124 CATACATCAGTTTACTGCAGTG 59 7812933 7813054 CAATGCACTTCCTGTTGAC 59 NA DesignNoJunction Drosophila melanogaster 50 Cdk7 FBgn0015617 FBtr0070756 2 1 1 129 X 5202772 5202862 GTTTGCCACAGTTTACAAGG 59 5202662 5202680 TATCTTGATCTCACGCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3071 FBgn0023527 FBtr0070398 3 1 1 133 X 2157021 2157108 GAAACCAGAACTACTCAAGG 57 2157204 2157222 TCTTTACCACAAGCATGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40856 FBgn0085526 FBtr0113939 2 1 1 74 U 9226990 9227008 CGACGTTGAATTATCCGTC 58 9227046 9227064 GATAAATCTACCGCTGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17691 FBgn0039993 FBtr0113758 3 1 4 90 U 1179200 1179275 GGTGTTCAGTAAATCTACGG 57 1179328 1179346 TAAATAACGTACCCTGCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41053 FBgn0069960 FBtr0113978 2 1 1 83 U 641843 641861 ATATACGAAGGCGATCGAG 58 641608 641797 TTCTCTTTCGTTCCTACTGC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Caps FBgn0053653 FBtr0091630,FBtr0091631,FBtr0091632 2 3 3 80 4 1247313 1247331 ATCTGGTGCATCATCACAG 59 1247372 1247459 ATCTCAGGTAAAGATCTGACAC 59 NA Drosophila melanogaster 50 CG7920 FBgn0039737 FBtr0085604 2 1 2 213 3R 25840613 25840631 CAACTACTTCACCTACGTG 57 25840418 25840436 ACCGAAAGATTGCAAACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 spz FBgn0003495 FBtr0085140 1 1 12 88 3R 22893080 22893101 GTCAGCATCTAATCACTTACAG 58 22892194 22892339 AGACAAAGGTATCCGATGG 58 NA Drosophila melanogaster 50 CG31140 FBgn0051140 FBtr0113393,FBtr0084497,FBtr0113392,FBtr0084498,FBtr0084499 3 5 5 81 3R 19792355 19792373 AAGCCAACATACTGTCACC 59 19792417 19798181 TAAAGTTGCAAACTTCGCAG 59 NA Drosophila melanogaster 50 CG6660 FBgn0039030 FBtr0084338 3 1 1 71 3R 18749517 18749535 ATGAAGACATTGTACGCCT 58 18749570 18749650 TATGAATACCGTGTCGAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5630 FBgn0038842 FBtr0113257,FBtr0083979 3 2 2 101 3R 16751961 16752071 CAGCGAGGATTATGATCCA 58 16752136 16752154 TCTGTTCCAGTTACTTGCT 58 NA Drosophila melanogaster 50 CG17838 FBgn0038826 FBtr0083962,FBtr0113256,FBtr0113255,FBtr0083959,FBtr0083960,FBtr0083963,FBtr0083958,FBtr0083961 3 8 8 135 3R 16622986 16623073 CAGGAAGAATTAAGGTTTGGG 58 16623170 16623188 TTATCCTCTGAGACGTCCT 58 NA Drosophila melanogaster 50 FK506-bp1 FBgn0013269 FBtr0083120 1 1 1 289 3R 11158533 11158735 GGTTTGAACATGAAGCCTG 59 11158195 11158214 GTCATTTGATCGTCATCCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4210 FBgn0038302 FBtr0083049 2 1 2 80 3R 11039936 11040025 AGAGGAAGATCTTAAACGAGAC 59 11040065 11040084 GTATCGTTGTCTACAAGCAC 58 NA Drosophila melanogaster 50 NK7.1 FBgn0024321 FBtr0082941,FBtr0082942 1 2 2 81 3R 10167297 10169958 CTACCAAGAAGGAAAGTTCTG 58 10167236 10167254 CTGATATCCGGTGGTAGAG 58 NA Drosophila melanogaster 50 CG34383 FBgn0085412 FBtr0112622,FBtr0112621,FBtr0112624,FBtr0112623 3 4 4 134 3R 9583496 9584190 GAACTCTAAGAAACTGGAGCA 59 9584286 9584304 TTGATGTGAGAGCCATCAC 59 NA Drosophila melanogaster 50 Men FBgn0002719 FBtr0082660,FBtr0082661 1 2 2 197 3R 8539869 8539943 CATCTGGATGGTGGATAGC 59 8539690 8539708 ATCAGCTCAAGGATCTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 glo FBgn0037954 FBtr0089918 2 1 3 289 3R 7644430 7644448 AATGTGACTAATGGCTCGG 59 7642476 7643743 ATACCAGAGAAGAACTCCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG5276 FBgn0037900 FBtr0082390 2 1 1 81 3R 7258583 7258601 TACATGATCCACGAGAGTG 58 7258646 7258718 ATTTCTCTTTCGAACACCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082207,FBtr0082209,FBtr0082206,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210,FBtr0082208 3 8 8 178 3R 5845148 5845239 TATCAATCGCTATCGTCCT 57 5844988 5845006 AATAGTTGAGCCAGATTCG 57 NA Drosophila melanogaster 50 Hdac3 FBgn0025825 FBtr0078767 1 1 1 162 3R 1299663 1299750 CATTCAGTGCAATTCCGTG 59 1299519 1299537 TATGCATATGTCGCTGTGG 59 NA Drosophila melanogaster 50 CG14640 FBgn0037227 FBtr0078976 2 1 1 60 3R 80515 80592 TTGTCCTATGCCTTTGCTC 59 80615 80634 CCAGGGTTATAGTTGTAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr78E FBgn0037114 FBtr0078463 1 1 1 138 3L 21659967 21660051 TAAGATTCTCATCGTCGCC 59 21659847 21659865 GTTGTACGATCCATCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ilk FBgn0028427 FBtr0078305 2 1 1 169 3L 21211281 21211299 GTGGTAGCTAAGATCCTGG 58 21211432 21211512 GAACGTGGCATAAACTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 Ac76E FBgn0004852 FBtr0074897 2 1 1 97 3L 19967922 19968001 CATTAACAAGATTCTGCTGGAG 59 19968059 19968077 AGTAGCTCTCGTGGTAGAG 59 NA Drosophila melanogaster 50 CG6485 FBgn0036706 FBtr0075249 2 1 1 60 3L 17313561 17313581 CGAGACCATCAAGATAGATCC 59 17313521 17313539 GAACATGGTGTAGAACTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PGRP-SB2 FBgn0043577 FBtr0075320 1 1 1 89 3L 16720010 16720088 GACTGGATTACCTCCTTCG 59 16720141 16720159 GAATAGTTGGGCGAAACCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13056 FBgn0040794 FBtr0075376 1 1 1 75 3L 16326437 16326526 GTCACAGAGAATGTACTTATCC 58 16326562 16326580 ATACAATTGCAGATCGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5284 FBgn0036566 FBtr0075444,FBtr0075445 1 2 2 81 3L 16087581 16087599 TATCCGTTCCTAGACAGCA 59 16087644 16087720 AAGTTTCATTCCGCTTTGG 58 NA Drosophila melanogaster 50 CG17032 FBgn0036547 FBtr0075511 3 1 1 118 3L 15952474 15952796 GATGATTTGCCTTCCAAGG 58 15952877 15952896 GATATTTGATCCAGGACCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CkIIalpha-i1 FBgn0015025 FBtr0075504 2 1 1 136 3L 15810266 15810343 AAATTGATGCTGCTATCCTG 58 15810442 15810460 GTCTATTTCGATGGGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7272 FBgn0036501 FBtr0075548 3 1 1 85 3L 15496314 15496334 CCATCTCCATCAAGAATACTG 57 15496446 15496464 AATAGCGAACATGGAGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10133 FBgn0036366 FBtr0075825 3 1 1 60 3L 13442727 13442746 GAGGAATTTACCCTACAGGC 59 13442686 13442706 GGTTCAATGTAGAACTGACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11529 FBgn0036264 FBtr0076005 1 1 1 60 3L 12191201 12191220 CAAACGTTGGATCCTAACAG 58 12191243 12191261 ATACACATCGTAGTGGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34239 FBgn0085268 FBtr0112433 1 1 1 85 3L 11033835 11034041 AGAATCCGCTGAAAGTGAC 59 11033768 11033786 CTTGAGGTCTTCCAAGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32036 FBgn0052036 FBtr0114525 3 1 1 75 3L 9481335 9481413 TTTACCACTTGAATGCCGA 59 9481278 9481296 TTTGCATAAGGTTCCAGCT 59 NA DesignNoJunction Drosophila melanogaster 50 Hsp22 FBgn0001223 FBtr0100558 3 1 2 62 3L 9366420 9366507 AATGTGGTGATCTACAAAGG 57 9366532 9366550 TTATCGTCAAAGTCCCTCC 58 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 desert FBgn0040229 FBtr0076575,FBtr0113320 3 2 2 76 3L 8747582 8752434 CCTACCGCAGTTATACACC 59 8752474 8752551 GGAGGTTCCATACGTTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 desert FBgn0040229 FBtr0076575,FBtr0113320 1 2 2 74 3L 8747584 8752436 TACCGCAGTTATACACCCT 59 8752474 8752551 GGAGGTTCCATACGTTGAG 59 NA DesignRelaxed Drosophila melanogaster 50 Atg18 FBgn0035850 FBtr0076693,FBtr0076692,FBtr0076691 1 3 3 124 3L 8181566 8181584 AATATCTGGTGTCCAGCTC 58 8181672 8182396 AAACGAGTAACCCATCCAG 59 NA Nonspecific Drosophila melanogaster 50 sphinx2 FBgn0052382 FBtr0076864 2 1 1 63 3L 7433754 7433826 TTGTTGTGGCATTGATCAC 58 7433709 7433733 CCAACTAGGTAGATGATTGTATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33523 FBgn0053523 FBtr0091478,FBtr0091477,FBtr0091475 3 3 4 94 3L 5921731 5921813 GACGTACAAGATCCAAACCA 59 5921870 5921888 ATATGTTGATGGTGGCCTC 59 NA Drosophila melanogaster 50 kst FBgn0004167 FBtr0112840,FBtr0073070,FBtr0073072,FBtr0073071 3 4 4 82 3L 3365741 3365818 AGTCCATGAAGCAACAGTC 59 3365862 3365882 TGAGTTACGAGAACTAACTGG 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-1389b FBgn0083045 FBtr0113526 3 1 1 61 2R 17221730 17221749 TTCGTATGAGGCTTTCAGAC 59 17221773 17221791 TGAGTGATACAATCGTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nplp1 FBgn0035092 FBtr0072443 1 1 2 82 2R 20925036 20926574 CAGAGAAGCGATTCCTAGG 59 20926620 20926638 AAACACTGCTTACAAACGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 enok FBgn0034975 FBtr0072250 1 1 1 176 2R 19988263 19988340 ACAGGTGTAAGACATGCTC 59 19988540 19988558 AAAGTTTCGAGGTCGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Tal FBgn0023477 FBtr0072141 1 1 1 256 2R 19828049 19828598 GCCATCAACATCTATAAGCC 58 19828876 19828894 CTCTTCTTGGTGTCGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Gr59e FBgn0041233 FBtr0072115 2 1 1 264 2R 19428883 19428968 AGAAATGTAACCTTTGCCAG 58 19428578 19428596 CAAACGTAAACCCAATTGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG3295 FBgn0034573 FBtr0071547 3 1 1 62 2R 16903820 16903838 CCTTACAAGCACTTCTTGG 58 16903776 16903797 GTCTTTGAGGAATATGAACGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18538 FBgn0034324 FBtr0086760 2 1 1 66 2R 14184840 14184913 TGATGAAACCATGGTACGT 58 14184943 14184961 TTGTAGTCGCTGACATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 1 5 7 80 2R 11836644 11836723 CATTTGCTACGTGCTACTC 58 11836582 11836603 GCTCTAGTTATATTCGAGAAGG 57 NA Drosophila melanogaster 50 AttA FBgn0012042 FBtr0087437 2 1 1 263 2R 10634904 10634922 CACAAGCATCCTAATCGTG 58 10635149 10635231 TGACCAGCATTGTTGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6337 FBgn0033873 FBtr0087646 2 1 1 74 2R 9722351 9722490 GGACTTTCAAACTTACGAGG 58 9722296 9722314 TAGTAGTTGGCGAAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8830 FBgn0033738 FBtr0087950,FBtr0087951 3 2 2 72 2R 8321598 8321617 ATGAATAGCGTACTTCAGGC 59 8321287 8321305 AATTGCACTCGATAAGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33012 FBgn0053012 FBtr0087909,FBtr0087910 3 2 2 80 2R 8256395 8256468 GTATGATACAGAGGCTCACTC 59 8256510 8256528 GACTCCGTGTAGTAAACGA 58 NA Drosophila melanogaster 50 Vps25 FBgn0022027 FBtr0088694 3 1 1 63 2R 4513070 4513140 CCCTTCTTTACACTACAGC 57 4513167 4513185 GATCTGTCCAGACCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)01289 FBgn0010482 FBtr0110900,FBtr0086137,FBtr0110901 3 3 4 97 2R 2610315 2610335 TTCATATGGTCAAGATCCAGG 59 2610181 2610259 CAGTAATGGGTTTCCATTTCTG 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-525h FBgn0083031 FBtr0113551 1 1 1 60 2L 20421341 20421361 GAATTGTGTCTCAAATGCTCC 59 20421382 20421401 TTGATTATTCAGGATGCCGT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 tsh FBgn0003866 FBtr0085907,FBtr0085906 2 2 2 69 2L 21836641 21836835 GGATAGAAATCAGAAAGCGC 59 21836867 21836885 GTTCAATCTCCGATCAGCA 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Syx5 FBgn0011708 FBtr0080831 2 1 2 82 2L 16308250 16308268 CTCGGAGTTCATGATGGTC 59 16308314 16308400 CCAACATTGTGAGCTTCTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31765 FBgn0051765 FBtr0080584 2 1 1 249 2L 13961720 13961738 ACTGGTCAGCATAATGCTC 59 13961951 13962136 ATATAGCTCTGGTTGTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5122 FBgn0032471 FBtr0080431 3 1 1 122 2L 13133716 13133735 TTCAGCTGATAGTCAATCCA 58 13133820 13133896 CATAGTTTGGCTCAGTGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG33305 FBgn0032351 FBtr0080221 1 1 1 60 2L 11159714 11159882 CATGTCCAGACCTTTAGGT 58 11159672 11159690 CACGGGTGCTCTATTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eEF1delta FBgn0032198 FBtr0079952 2 1 2 88 2L 10233559 10233772 AAGATCGATGGCGTTACTC 59 10233824 10233842 TTCAACTCCTTGTGTTCAC 57 NA DesignNoJunction Drosophila melanogaster 50 CG4036 FBgn0032149 FBtr0079870 2 1 1 62 2L 9791681 9791760 ATACCTATGCCAAACCTCTC 58 9791785 9791803 ATGCTCAAACTGGTACCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 jp FBgn0032129 FBtr0113030,FBtr0079861,FBtr0079860 3 3 3 95 2L 9549654 9550211 AGGTTAAGGACTGGTTTGTG 59 9549578 9549596 GCTAGGTGAGCATGTAGAC 59 NA Drosophila melanogaster 50 CG13792 FBgn0031927 FBtr0079520 3 1 1 60 2L 7645545 7645563 GTGCAACTACAAGAACTCG 58 7645503 7645522 ATACTTGAGACACTTGAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kr-h2 FBgn0028419 FBtr0079192 2 1 1 144 2L 6072542 6072560 GCAGCAATCTCAATCACAG 59 6072667 6072743 CTGTTGTGAGGTAAAGATGG 58 NA Drosophila melanogaster 50 odd FBgn0002985 FBtr0077557 3 1 1 61 2L 3606296 3606314 TGACGAGCTCAACTTAAGC 59 3606067 3606088 CCTTGATCACTATGAAATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3246 FBgn0031538 FBtr0077572 1 1 1 100 2L 3461370 3461446 GAAATGAGATTCAACGGTGG 59 3461289 3461307 ACTGTAAAGGGTCCATTGG 59 NA Drosophila melanogaster 50 CG14343 FBgn0031325 FBtr0077975 1 1 1 60 2L 1219863 1219882 AGTATTGGAACCTGCATACC 59 1219905 1219923 CAGACATCCATCGACTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nle FBgn0021874 FBtr0078075 2 1 1 157 2L 567211 567229 CAGCTGATGGAATCTTGTG 58 567014 567090 TTCCTGCAATTCCTCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me28S-G3113b FBgn0086064 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:U76:54Eb FBgn0063376 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG12061 FBgn0040031 FBtr0113683,FBtr0113682 1 2 3 132 XHet 23149 23167 TATGTGTTGTGGGATTCGT 58 23261 24999 CGTGTTCATTCTTCTTACGTC 59 NA Drosophila melanogaster 50 CG32523 FBgn0052523 FBtr0077183 1 1 1 60 X 21089562 21089580 CGCTGGATGTTCTACTCTC 59 21089604 21089622 TATTCTTGGAATGCAGCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1835 FBgn0031127 FBtr0077277 1 1 2 176 X 20540413 20540431 TAAGGAGCTTGCCTTTGAG 59 20540635 20540653 ATTACACGCATTTACACGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG1631 FBgn0031101 FBtr0077297 3 1 1 60 X 20198679 20198697 GACGTTTCGGATATTTCCA 57 20198720 20198739 TATCGCTAGTATAGTCGTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32556 FBgn0052556 FBtr0074477,FBtr0074478 3 2 2 97 X 17568322 17568340 AATCACTACGAACGACGAC 59 17568179 17568197 TCGTAGTAGTCATCCTCCC 59 NA DesignNoJunction Drosophila melanogaster 50 Nup153 FBgn0061200 FBtr0113475,FBtr0074284 1 2 2 60 X 16494295 16494313 GGAAGAGGATGAATCCTCG 59 16494337 16494421 CATGATGGAGTTGTTGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG8260 FBgn0030684 FBtr0074088,FBtr0074089 3 2 2 60 X 15650647 15650666 AGTATACGAACACTGAAGGA 57 15650689 15650707 CTTCGTGGTCTATTTCGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3638 FBgn0026875 FBtr0070248,FBtr0070246,FBtr0070247 1 3 4 168 X 1120310 1120891 CATCGAGTTGCAAAGTCTG 59 1120160 1120178 CATCAGCGTAATGATGACC 58 NA Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451 2 4 8 95 4 159114 159132 AAGCGGCTAAAGACTAGTG 59 159190 160904 AGTACCAGTCTTGTCAAAGC 59 NA Drosophila melanogaster 50 cenB1A FBgn0039056 FBtr0084368 1 1 2 80 3R 18946207 18946226 TCTACAACAGCACTTTCTCG 59 18946269 18946349 TTGTTCATCTCCTGGAAGC 59 NA Drosophila melanogaster 50 CG17274 FBgn0038835 FBtr0083989 1 1 2 85 3R 16679653 16679671 GATCTCCGATGAGGAATGG 59 16679380 16679607 TCAGGAATTCCTTCATGTACTC 59 NA Drosophila melanogaster 50 pr-set7 FBgn0011474 FBtr0082929,FBtr0082928,FBtr0082930 2 3 3 146 3R 10142453 10142471 AAATCTGCTGGAGGATCAG 59 10142581 10142670 AAGGGAACTCCTATTGTGC 59 NA Drosophila melanogaster 50 CG14736 FBgn0037986 FBtr0089692,FBtr0089691 3 2 3 80 3R 7866655 7866732 AGGTCGTCTTAGGAAAGGT 59 7866773 7866794 ATATCTACTCTGTGAGTCTCGT 59 NA Drosophila melanogaster 50 CG34287 FBgn0085316 FBtr0112483 3 1 1 60 3R 1679437 1679456 ATTTCCGAATTCTGAAGGAC 57 1679479 1679497 TAATCGTTCATGTACACCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078673,FBtr0078676 3 2 5 87 3R 1587421 1587439 TTCATTAGCTGGAAGAGCG 59 1586949 1587373 ATGTACATACCCAGTTATGTCC 59 NA Drosophila melanogaster 50 AP-2 FBgn0023417 FBtr0078419,FBtr0078418 1 2 2 221 3L 21602979 21604253 GACATGTCACCCAATTGTC 58 21604438 21605100 TCATGCTCTTTATGAGCGG 59 NA DesignRelaxed Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0075438,FBtr0112850,FBtr0075439 2 3 6 84 3L 16070897 16073864 AGAAGAGCTCAAGCAACTC 59 16073909 16073930 GCTAATTACTCTAATCAACGCG 59 NA Drosophila melanogaster 50 comm2 FBgn0041160 FBtr0075580 2 1 1 60 3L 15692582 15692602 GATTTCCTGAAACAGATTGGC 59 15692542 15692561 GATGCTGATGTTTCAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32082 FBgn0052082 FBtr0076216,FBtr0113423,FBtr0113422 2 3 3 87 3L 11152075 11152404 GCTACAAGAATGCCATGAC 58 11152455 11152473 TAGACCATCCAGTGTTTGG 58 NA Drosophila melanogaster 50 CG32052 FBgn0044328 FBtr0076330 2 1 1 83 3L 9798476 9799012 ACAGGAAACGGTATACATCG 59 9799058 9799076 AAAGTCAACTGGTTGTGCT 59 NA Drosophila melanogaster 50 pall FBgn0036005 FBtr0076471 1 1 1 86 3L 9480579 9480597 AGATCATTATGGCCCATGC 59 9480442 9480529 ATAGAATGTGGTTCCTGCG 59 NA Drosophila melanogaster 50 CG1140 FBgn0035298 FBtr0072843,FBtr0072844 2 2 2 83 3L 1966297 1966373 GATGATTCCTGGCAAACTG 58 1966420 1966438 ATGGTGATGATCACCTTGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Or59c FBgn0034866 FBtr0072020 3 1 1 60 2R 19360472 19360491 AGTGTTCATCTCCTTGTTCC 59 19360431 19360450 CAGATTAGCTATGCGATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10543 FBgn0034570 FBtr0071524 2 1 3 174 2R 16889924 16890006 CATCACCTAAGTAGCAGCA 59 16890144 16890162 TGGGAATATGGTCTGATGG 58 NA Drosophila melanogaster 50 sano FBgn0034408 FBtr0086567,FBtr0086569,FBtr0086566,FBtr0086568 2 4 4 271 2R 14844989 14845235 TCACATCAGGTACAAGAGTC 58 14845469 14845487 TATTGCTACTGGAACTCCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5189 FBgn0034350 FBtr0086694 1 1 1 229 2R 14334286 14334304 GAGCTCTATTGGCCTACTC 58 14334564 14334582 CTTCAGAAGACCCAATCCC 59 NA DesignNoJunction Drosophila melanogaster 50 mus210 FBgn0004698 FBtr0087373,FBtr0087374 1 2 3 111 2R 11200223 11200241 AAGTCAACGCGAATAAAGC 59 11200316 11202134 ATAGATCTGCATCTGCCAC 59 NA Nonspecific Drosophila melanogaster 50 CG7881 FBgn0033048 FBtr0086033 3 1 1 108 2R 1850680 1850698 CTTATTCTTGGCCATCGTC 58 1850528 1850608 GTTGTACTCAGGAAAGTCC 57 NA Drosophila melanogaster 50 CG10947 FBgn0032857 FBtr0081368,FBtr0081369,FBtr0081370 3 3 3 61 2L 20386716 20386734 GATATCGGTGGAGAACGTG 59 20386673 20386691 ACTTGGTATAGCAGCTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13077 FBgn0032810 FBtr0081257 2 1 1 290 2L 19566372 19566391 TATTTCCTATCTCACGCTGC 59 19566995 19567013 AGAATGCACAGTACGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6115 FBgn0040985 FBtr0080959 2 1 1 80 2L 16887794 16887812 TCATTAGCCTCTACAAGCA 57 16887617 16887635 TCTGCTTCCTGAACTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31781 FBgn0051781 FBtr0080922 3 1 1 169 2L 16877991 16878010 ACCAATCACCAATCAAATCG 58 16878141 16878160 CATGTGACTTACGACTAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sop2 FBgn0001961 FBtr0080570,FBtr0080569 3 2 2 60 2L 13828454 13828473 GATAAGTCGCAGAAGAAGGA 59 13828413 13828432 CCATCGACTGAAAGATTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ca-beta FBgn0015608 FBtr0080218,FBtr0080217,FBtr0080220,FBtr0080219 2 4 4 118 2L 11165818 11165836 ACAATAACTGGTGGATCGG 59 11165652 11165670 ATACAGTCTTGAGGGTCTG 57 NA DesignNoJunction Drosophila melanogaster 50 nmd FBgn0005322 FBtr0080065 1 1 1 60 2L 10303776 10303795 GCAGATATTCCAGGTACTGG 59 10303735 10303756 CACCGAATAATATGTGATCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SP555 FBgn0040280 FBtr0079004 1 1 2 162 2L 5039884 5039902 GAGTTCGTCAACCTACAGG 59 5040120 5040138 ACATCTCCAGCTGATTCAC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Rbp9 FBgn0010263 FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635 3 7 7 84 2L 2963121 2963234 CAATCTGTTAAGGTGATTCGTG 59 2963279 2963297 CAGCCTCTTCGTAATTCGT 59 NA Drosophila melanogaster 50 CG34144 FBgn0083980 FBtr0110988 1 1 1 273 X 11192128 11192146 TAATAACCACCACAACAGC 57 11191405 11191891 AAGTTTGATGAAGGTCCTG 57 NA DesignNoJunction Drosophila melanogaster 50 bxd FBgn0020556 FBtr0083343 2 1 4 93 3R 12571211 12571230 CAATATGCTTCGGTAATCGT 58 12570416 12571155 ATGGGAAGTGATAATGTGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG11315 FBgn0039801 FBtr0085721 2 1 2 216 3R 26571860 26571878 CTGCTCGATTAGTCAGGTG 59 26571581 26571680 GATGGTGTATGGATTGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 veli FBgn0039269 FBtr0084788 3 1 2 82 3R 20890640 20890658 AATAATACCTGGAGGCGTG 59 20890506 20890594 CTCTTACCACACCATTCAC 57 NA DesignNoJunction Drosophila melanogaster 50 cher FBgn0014141 FBtr0089473,FBtr0089472,FBtr0089474,FBtr0089471 3 4 4 153 3R 12920452 12920470 TGAAGTCAGAATGCCTAGC 59 12920254 12920335 TTTGAAGGGAGATCCTTGC 59 NA Drosophila melanogaster 50 p FBgn0086679 FBtr0081887 3 1 1 282 3R 4488690 4488786 AACAAATTGGTAACCGTCC 58 4488426 4488445 CTTTGTACCTTTGCGAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14662 FBgn0037291 FBtr0078846 3 1 1 61 3R 808373 808393 CTGATTCAGGGAAGATTTGAG 58 808098 808350 ATAGTAGCAATCGGACCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MESR6 FBgn0036846 FBtr0075026 3 1 1 220 3L 19086205 19086224 TCTTTATCGTCGACTACCAC 58 19086407 19086767 ATGTCCTGCATAAAGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6018 FBgn0034736 FBtr0071835 2 1 1 60 2R 18438339 18438357 GGACTGAAGGACCAAATCC 59 18438378 18438399 CATTGAAACTGGCTATGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9000 FBgn0034176 FBtr0087059 1 1 1 61 2R 12889303 12889321 TCGTAGTCATCGAGAATGC 59 12889109 12889278 TTGGTACACTTTCACCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sema-2a FBgn0011260 FBtr0087089,FBtr0087090,FBtr0087091,FBtr0087088 1 4 4 90 2R 12416665 12416686 CTGATCTGTATAATACTTCGGC 58 12416737 12416873 AAGTTTGGTTTGTCCAACC 58 NA Drosophila melanogaster 50 CG8155 FBgn0034009 FBtr0087391 1 1 1 93 2R 11207995 11208071 GGAATTCGTACCCATTACTG 58 11207921 11207939 CAGATAGGAAGGACTGGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34216 FBgn0085245 FBtr0112409 2 1 1 180 2R 3591905 3591924 GGACTTTGGAGATGTATTGC 58 3591416 3591763 GCTTTGCATAAAGGGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13990 FBgn0040950 FBtr0079203 2 1 1 135 2L 6152059 6152141 CATAGTAATTGCATGTGCCG 59 6152239 6152257 TCCATCGGGCTTATAAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR31494 FBgn0051494 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi28S-1192d FBgn0082998 FBtr0113563 2 1 1 62 X 17038076 17038094 ATCTAATTCTGCATGGTGG 57 17038032 17038052 GGATGGAAATTAATCTGGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13865 FBgn0039965 FBtr0111192 1 1 2 63 X 22415902 22415920 TTCAAAGTCCATGCCTAGG 59 22416291 22416309 TTTGGTCAGAAACTCCAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG41479 FBgn0084039 FBtr0111179 3 1 1 81 X 22053041 22053059 TTTGATAATCCGCTCACAG 57 22052978 22052998 CAACAAAGTTACTACCCACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1718 FBgn0031170 FBtr0077233 2 1 1 80 X 21167097 21167115 AAATACGAGGATTTGGCTC 57 21166971 21167054 GATATAGTCCTCAAAGCCCT 58 NA Drosophila melanogaster 50 CG14235 FBgn0031066 FBtr0074817,FBtr0074815,FBtr0074816 2 3 3 197 X 19638353 19638371 CATCGCTATAGCTATCGCC 59 19635081 19635099 GAAGTCGATGTACGACTGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Tim9b FBgn0027358 FBtr0074766,FBtr0074767 2 2 2 60 X 19512144 19512162 AAGTTTACGTGGATGTGCA 59 19512102 19512120 TTCTCCTCCATTTCCTCCA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14207 FBgn0031037 FBtr0074733,FBtr0074734 1 2 2 94 X 19504475 19504493 ATTAGCTCACCCTTGATCC 58 19504616 19504634 TTCACAACAATTTCCTCGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32544 FBgn0052544 FBtr0074644 3 1 1 63 X 18754563 18754581 CAACAAGACGAGAGTCTGG 59 18754608 18754626 TGGACAGGATGCTATTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6873 FBgn0030951 FBtr0074607 1 1 1 60 X 18633528 18633546 ATGAGTATCAGCACCAGTG 59 18633486 18633505 AGGATTAGCTTCTCCTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8945 FBgn0030815 FBtr0074411 1 1 1 118 X 16978206 16978224 CAGATTTGGCGTCTAAAGC 59 16978005 16978125 GTAAGACCTCTGAGACTTGG 59 NA Drosophila melanogaster 50 CG15865 FBgn0015336 FBtr0074375 1 1 1 60 X 16556643 16556662 GGTGTTCCAACTAATGAAGC 59 16556602 16556620 ACAGGATGTGGTTGATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 3 7 7 83 X 15717700 15717788 GATCCATTGCTTGAGACTG 58 15717832 15717853 TTCGTAGAGATCTTTAAGTCCC 59 NA Drosophila melanogaster 50 CG5548 FBgn0030605 FBtr0073960 1 1 1 107 X 14958436 14958455 GACTTAGGCTAGATAACCCT 57 14958525 14958543 AAACTAGCTTGCAACATGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG33248 FBgn0053248 FBtr0073924 2 1 1 127 X 14127551 14127569 CTTTAACAAGCCGGAACTG 59 14127285 14127460 GTTCAACTCTGACTTCGCT 59 NA Drosophila melanogaster 50 g FBgn0001087 FBtr0073842 3 1 1 89 X 13624457 13624536 CCAGAACTTGAAATATCTGGG 58 13624388 13624406 AGTATGAGATCCTTGTGCG 59 NA Drosophila melanogaster 50 Lig4 FBgn0030506 FBtr0073847 2 1 1 80 X 13561162 13561240 AGGACACAGAAGTTAAGCAG 59 13561101 13561119 ACCGAATTAGCCACTTCTG 59 NA Drosophila melanogaster 50 up FBgn0004169 FBtr0073851,FBtr0100561,FBtr0073853,FBtr0100563,FBtr0073852,FBtr0100562 1 6 6 80 X 13489402 13489421 GAGCTCATTGTCAAATTGGA 58 13489264 13489362 CAACTCTTTCAAATCGTAGTCC 59 NA Drosophila melanogaster 50 CG33651 FBgn0053651 FBtr0091628 1 1 1 63 X 12785773 12785791 TACAGACGACCTTAAGGAG 57 12785728 12785746 GAAATGTGGTTTGCTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LIMK1 FBgn0041203 FBtr0073661,FBtr0073659,FBtr0073660 3 3 3 130 X 12482056 12482074 CCCGAGATGATGAAAGGTC 59 12481875 12481893 AGACTGAAGTCCGAATTGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15926 FBgn0062447 FBtr0073649 3 1 1 150 X 12370017 12370191 CAATATGATCAGAGGTGGCA 59 12370372 12370390 TGTTGCTAGATTCTGCGAG 59 NA Drosophila melanogaster 50 CG33235 FBgn0030307 FBtr0073545 3 1 1 61 X 11381541 11381562 TAATAATTCTAGGCTCGGACAG 59 11381501 11381520 CTCATCTTTGCAGAGATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kap3 FBgn0028421 FBtr0112931,FBtr0112934,FBtr0112933,FBtr0112932,FBtr0073459 2 5 5 163 X 11231866 11231884 AATCATACGACTCCGTTCG 59 11231668 11231739 CCGGTATATCATTGCTTGC 58 NA Drosophila melanogaster 50 CG15309 FBgn0030183 FBtr0112974,FBtr0071487 1 2 2 60 X 10101547 10101566 ACATACTCATGTGTTCACTG 57 10101506 10101524 ACTTCGATATGAGCTCGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Idgf4 FBgn0026415 FBtr0071394,FBtr0071393 2 2 2 161 X 9823337 9823355 AAGAAGATCTTCAGCGGTG 59 9823080 9823212 ATCGAAGAACAGCGAAGAG 59 NA Nonspecific Drosophila melanogaster 50 Hex-A FBgn0001186 FBtr0071361,FBtr0071362 1 2 2 60 X 9481076 9481094 TGCCATACTCAATGACACC 59 9481118 9481136 GCAGTTGTGATTCTTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10970 FBgn0030078 FBtr0071356 1 1 1 60 X 8963895 8963914 CCTTTAAGAAGCTCATCCTG 57 8963854 8963873 ATAATGAACTCCTTGATGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Caf1-180 FBgn0030054 FBtr0071228 3 1 1 183 X 8497904 8497986 ATAGATTACCTTTCACCGGC 59 8497678 8497758 CGAAGAGCACCTTATCCTG 59 NA Drosophila melanogaster 50 Sxl FBgn0003659 FBtr0100202,FBtr0100200,FBtr0100209,FBtr0100215,FBtr0100207,FBtr0100210,FBtr0100205,FBtr0100212,FBtr0100201,FBtr0100206,FBtr0100203,FBtr0100211 1 12 15 238 X 6978842 6979198 TTTGTTCGGTACAACAAGC 58 6978622 6978640 ATTGATCTACCTCTGTGCA 57 NA DesignRelaxed Drosophila melanogaster 50 mab-2 FBgn0029003 FBtr0070890 2 1 1 137 X 5906502 5906520 GAAGAGATCCATGTCCCTG 59 5906383 5906401 ATCATCTTGACAATGTCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32755 FBgn0052755 FBtr0070862 1 1 1 114 X 5844917 5844935 ATTCATACCGTGGGAATCG 59 5845013 5845086 TTTCTCCTTCATGGTGACC 59 NA Drosophila melanogaster 50 CG3097 FBgn0029804 FBtr0070836 2 1 1 109 X 5660892 5661115 AGTGCTTAGAATCTCGGAG 58 5660801 5660819 GGTACAGGATGAAGGTCAC 59 NA Drosophila melanogaster 50 Rnp4F FBgn0014024 FBtr0070752,FBtr0112876,FBtr0112875,FBtr0070753 2 4 4 80 X 5214528 5214600 AAATAATGGGCTATCCGGG 59 5214466 5214485 CACCATTGTATTCGCTTTCC 59 NA Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070738,FBtr0070739,FBtr0070740,FBtr0100408 3 4 4 239 X 4962659 4962677 GATTCAACGACACCTTCGA 59 4962976 4962994 TCTTCAGGTGCAGATAGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3081 FBgn0025613 FBtr0070693 2 1 1 60 X 4533911 4533929 AGCAGTATCAATCGTCACC 59 4533869 4533888 TATTTCTCCCTCAAAGCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3626 FBgn0029706 FBtr0070652 3 1 1 84 X 4263412 4263498 ACCTATAAGGAATTGGATGTGG 59 4263541 4263561 ATAGGACATAGCCCAATTCAC 59 NA Drosophila melanogaster 50 CG32776 FBgn0052776 FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630 2 4 4 88 X 3791673 3795151 CCTGAGTCTCGATGATGAC 59 3791603 3791623 CGGGATGATCAATAATCTCCA 59 NA Drosophila melanogaster 50 CG32776 FBgn0052776 FBtr0070630,FBtr0100628,FBtr0070629,FBtr0100630 3 4 4 89 X 3791673 3795151 CCTGAGTCTCGATGATGAC 59 3791602 3791621 GCGGGATGATCAATAATCTC 58 NA Drosophila melanogaster 50 CG12535 FBgn0029657 FBtr0070534,FBtr0070535 1 2 2 61 X 3287188 3287206 AAGTTTGGTCATGTCCCTG 59 3287145 3287163 TAGGACATAGAAGTGCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8310 FBgn0040377 FBtr0070450 1 1 1 219 X 2473970 2474043 GGCAAGATCATTGAGACCA 59 2473769 2473787 CCAACTCATAGGTGTCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 phl FBgn0003079 FBtr0112818,FBtr0111025,FBtr0070401 3 3 3 147 X 2236245 2236263 CACAGATCACTCCAACTCC 59 2236374 2236460 CTCCGCCAGAATATTCCAG 59 NA Drosophila melanogaster 50 CG2854 FBgn0040391 FBtr0070399 3 1 1 60 X 2221476 2221494 GTTCTATATTCCATCGGGC 57 2221518 2221536 CCTAACCAGTCGACTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 arm FBgn0000117 FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988 3 4 5 93 X 1787500 1787518 AGAAGAAGCATATGAGGGC 59 1786142 1787446 AGTATCATATCCTTGCTGATGG 59 NA Drosophila melanogaster 50 hfw FBgn0001189 FBtr0070270 1 1 1 83 X 1566259 1566277 TATGAGTTCGAGGGTACCA 59 1566324 1566408 GTACTCCGGAATCTTGCTC 59 NA Drosophila melanogaster 50 futsch FBgn0085416 FBtr0112628 1 1 1 132 X 1342696 1342714 CACGTGGACTTCTTTAAGC 58 1342810 1342891 TAATGGTGACCTCCAACTC 58 NA Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 2 8 8 61 X 551358 551376 GGATGATGAGAGCAAGGAG 59 551401 551419 TTAGGAAATCTGCATCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17829 FBgn0025635 FBtr0070118,FBtr0070117,FBtr0070116 1 3 3 69 X 520822 520840 ATTCTGTACGCACCTACAC 59 520951 520969 TACAGAATGGGATTGTTGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG13365 FBgn0029529 FBtr0070160 3 1 1 113 X 514982 515001 AAGTACTACGGCTACAAGAC 58 514888 514906 GTGGAATCCAGAGAACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ewg FBgn0005427 FBtr0100581,FBtr0100580 1 2 8 82 X 165638 167225 CAACAGCAATTACACCACG 59 165574 165594 GATTATTTGGGTCTACCTGGA 58 NA Drosophila melanogaster 50 SP71 FBgn0029128 FBtr0100136,FBtr0100135 3 2 2 81 X 94412 94494 CTATGATGTTTCTGTTCACTGC 59 94535 94554 ATAAATGCGTCCATTGAACG 59 NA Drosophila melanogaster 50 CR40659 FBgn0085763 FBtr0114213 1 1 1 60 U 9684736 9684755 TACTCATCCACATACTCACC 58 9684695 9684713 ATCAAACACGGTCAAATGG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR41620 FBgn0085826 FBtr0114284 1 1 1 90 U 9844416 9844434 AGGACACATGAACATCGAC 59 9844344 9844362 TATGTAGTCCAAGCAGCAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40779 FBgn0085774 FBtr0114224 1 1 1 60 U 9064031 9064051 TTTCTCGAAATCTATGGGTGG 59 9063991 9064009 CAGACAAATCACTCCACGA 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41562 FBgn0085693 FBtr0114142 1 1 1 60 U 5467698 5467716 AGAACCATCTCGAGTTCCT 59 5467740 5467758 ATGGCTTTCTTGACTTCCT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40275 FBgn0058275 FBtr0113857 2 1 2 76 U 1839126 1839144 GGAATATAGCTGGTGTTGC 58 1845814 1845832 ATTAGGAGCTTTAACGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 bt FBgn0005666 FBtr0089792,FBtr0089791,FBtr0089794 3 3 4 99 4 750190 751409 TTAACTTTCAAGGTGCGAG 57 751472 751490 TTCATGGTGATCAATGTGC 58 NA Drosophila melanogaster 50 ey FBgn0005558 FBtr0100396,FBtr0089236,FBtr0100395,FBtr0089235 1 4 4 80 4 731644 731662 CGGCCATGTGATATTTCTC 58 731704 733134 TCCTGTTTCATAATACCTCCC 58 NA Drosophila melanogaster 50 NfI FBgn0042696 FBtr0089141 2 1 1 80 4 296250 296269 TTTAAGAGGCTGTATGATCG 57 294526 296208 AAAGGGTGAAATTCATCCTG 58 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0112657,FBtr0089159,FBtr0089156 1 8 10 80 4 115558 115579 ACGAGATAACTATGGTTACGTG 59 115618 120041 ATATTATTGCCTCCCGAATCC 59 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 2 14 14 109 3R 27690344 27690863 AAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864 1 1 14 107 3R 27707590 27747369 AAACTGAACTATTTGCGCG 59 27707501 27707519 CAGTTTGGCCTTCTTTGTG 59 NA Drosophila melanogaster 50 CG15544 FBgn0039804 FBtr0085708 3 1 1 146 3R 26665742 26666179 CCCAATAGAGATCTAGTCAAGTG 59 26666285 26666303 TGAGGAGGAAGAGGATGAC 59 NA Drosophila melanogaster 50 tmod FBgn0082582 FBtr0085659,FBtr0085661,FBtr0085663,FBtr0085658,FBtr0085662,FBtr0085660 2 6 7 189 3R 26398542 26398560 CACCATCGAGGAGTTTAGG 59 26398786 26402911 TTTCACACGTATTCTGTCGA 59 NA Drosophila melanogaster 50 Sry-beta FBgn0003511 FBtr0085556 3 1 1 76 3R 25865715 25865733 AGAAGATCATAAACCAGCG 57 25865773 25865791 GTTGAAGAGGTACTCCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15515 FBgn0039719 FBtr0085500 1 1 1 60 3R 25731958 25731976 GTCATGGGTATGTACTCCT 57 25732000 25732018 TGTACATCGTCACAGTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7601 FBgn0027583 FBtr0085544 1 1 1 80 3R 25561672 25561746 TGACCAAAGCTCTACTTCC 58 25561610 25561629 CAAACTTTCCCTGAACAGAG 58 NA Drosophila melanogaster 50 Cnx99A FBgn0015622 FBtr0110909,FBtr0085438,FBtr0085437 3 3 4 116 3R 25142527 25142547 CGATATTCTCTTCGACAACCT 59 25142077 25142449 ACGAATGAGTCCGATTCAC 59 NA Drosophila melanogaster 50 CG31050 FBgn0051050 FBtr0085317 1 1 1 60 3R 24475943 24475961 CTTCCTCCACCAGAATACC 59 24475901 24475920 ACTTCCACTAATACGAGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9986 FBgn0039589 FBtr0085304 1 1 1 80 3R 24433363 24433381 CAGAGCTGGTGTTTAAGTG 58 24433425 24433502 GTTGCAAGGTGCTTAACTC 59 NA Drosophila melanogaster 50 Hrb98DE FBgn0001215 FBtr0085302,FBtr0085298,FBtr0085303,FBtr0085299,FBtr0085301,FBtr0085300 3 6 6 203 3R 24428910 24428928 CAATTGGAACAATGGTGGC 59 24429384 24429402 CAATATCTGCGGTTGTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 wdb FBgn0027492 FBtr0085204,FBtr0085208,FBtr0085203,FBtr0085209,FBtr0085205,FBtr0085207,FBtr0085206 1 7 7 125 3R 23392424 23392442 AAATTCTTAGGACTGCGGG 59 23392253 23392336 GTTGATGATACTGCCAAGGA 59 NA Drosophila melanogaster 50 CG6051 FBgn0039492 FBtr0113297 3 1 1 179 3R 22954289 22954368 AGAATCAGGACAAAGTGCT 58 22954128 22954146 CTCGGTTCATAATCGAGGA 58 NA Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100335,FBtr0100339,FBtr0085093,FBtr0085092 2 4 9 102 3R 22699389 22699589 TAGATTGGATGCTCTTTGGG 59 22699306 22699326 TCCTGCTTAGTAACTCTAAGC 58 NA InUTR Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100335,FBtr0100336 2 2 9 68 3R 22699829 22699848 CAATATGAATGCAAACCGCA 59 22699712 22699798 CCGTATATGCTACGGTAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG6154 FBgn0039420 FBtr0084992,FBtr0084991 2 2 2 81 3R 22095467 22095485 ATCAACCACATAAGGGAGG 58 22095530 22095682 CTTTGGGCACTAAGTTGAC 58 NA Drosophila melanogaster 50 RpL34a FBgn0039406 FBtr0084973,FBtr0084972 1 2 2 78 3R 21884404 21884422 ATCGAAGAGCAGAAGATCG 59 21884344 21884362 TCTCCACAACCTTCTTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31111 FBgn0051111 FBtr0084790 2 1 1 60 3R 20881129 20881148 AATACCCGACAATGATCTGG 59 20881088 20881106 CATGTGACACATATTGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ssh FBgn0029157 FBtr0084800,FBtr0084799 2 2 2 163 3R 20769134 20769152 CTCTTAAGGATATCCCGCC 58 20768924 20769007 CTTGACAGCCATCTTTAGC 58 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100638,FBtr0084685,FBtr0100627,FBtr0100636,FBtr0100637 1 5 17 94 3R 20517641 20519497 AGATCGTTCAAGACGTCAC 59 20519555 20519573 GAAGGTGATAGGGTTTCGG 59 NA Drosophila melanogaster 50 CG13624 FBgn0039209 FBtr0084672,FBtr0084675,FBtr0110796,FBtr0084674,FBtr0084673,FBtr0110795 1 6 6 107 3R 20386540 20386627 CATTAAGGTGTACAAGCACAG 59 20386453 20386471 CTTAGCTTGTCCAGTTCCT 58 NA Drosophila melanogaster 50 CG13618 FBgn0039203 FBtr0084643 1 1 1 77 3R 20352352 20352370 GAACTTCGACAAATGCCTG 59 20352473 20352491 ATGCCAAATTCCCTATTGC 58 NA DesignNoJunction Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 1 5 6 80 3R 20045369 20045388 ATGAACATCTACAACGAACC 57 20025660 20045326 TGGATTCACGGTAAATGAC 57 NA Drosophila melanogaster 50 Syx1A FBgn0013343 FBtr0084588 2 1 1 60 3R 19929419 19929437 TATGGACTATGTGCAGACG 58 19929377 19929396 TTTACTCTGGTACTTGAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab7 FBgn0015795 FBtr0084503 3 1 1 107 3R 19820232 19820251 ATACCCTACTACGAAACGTC 58 19820321 19820400 GTTGATAACTTCAGCCTCC 57 NA Drosophila melanogaster 50 CG31140 FBgn0051140 FBtr0084497,FBtr0113392,FBtr0084498 2 3 5 81 3R 19802102 19802121 TCACAAATCGGATAAATCGG 58 19802162 19802239 CACCTTGATCATCTCTATATCC 57 NA Drosophila melanogaster 50 btn FBgn0014949 FBtr0084278 3 1 1 65 3R 18412175 18412193 CTAATTGGTGCAACGAAGC 59 18412128 18412147 GAAGTTCTTGACCAGTAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6921 FBgn0038985 FBtr0084262,FBtr0084261,FBtr0084263 3 3 3 94 3R 18380687 18380708 GTTCTATAATGCCTTTCAGGTC 58 18381152 18381171 ACTTCTTCGAGAAGATCGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31169 FBgn0051169 FBtr0084217,FBtr0084218 1 2 2 80 3R 18209069 18209140 TATGCAACACGAATTTCCG 58 18209184 18209202 GCCTCTATCATCAGTTCCG 59 NA Drosophila melanogaster 50 CG5740 FBgn0038932 FBtr0084195,FBtr0084196 1 2 2 82 3R 17957955 17958385 CCTGACCAATCTATTTGAGGA 59 17958429 17958447 ATTCGGTTATCTCACGCAG 59 NA Drosophila melanogaster 50 BG4 FBgn0038928 FBtr0084176 1 1 1 61 3R 17860377 17860395 TGTCGAAGAGATTGGTTCG 59 17860417 17860438 CAATTAAATCCTCGATGGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13409 FBgn0038926 FBtr0113264,FBtr0084184 3 2 2 104 3R 17855942 17855961 ATGTTCTTCTACATCGCCTG 59 17855791 17855876 CAAGCGCATATCAAAGTACG 59 NA Drosophila melanogaster 50 CG6353 FBgn0038893 FBtr0084116 2 1 1 159 3R 17487932 17488449 GGATGTTCAAATCCACGGA 59 17487791 17487810 GTGAAAGAGTAAGCTCTCCA 59 NA Drosophila melanogaster 50 ETHR FBgn0038874 FBtr0084053 3 1 2 117 3R 17085602 17089752 TTTACGAGTCCCATCATCG 59 17089832 17089851 CCACGAAGTAGAAGATCGAC 59 NA Drosophila melanogaster 50 CG10825 FBgn0038860 FBtr0113258 2 1 3 121 3R 16956617 16956637 GTGTGCAGAAATACATACACG 59 16956796 16956814 TCTGAGCATTGAGACTCCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15695 FBgn0038832 FBtr0083967 2 1 1 61 3R 16669091 16669177 GATACAACAAGATGGGCGA 59 16669202 16669220 GTTAAATCCCGTGAGAACC 58 NA DesignRelaxed Drosophila melanogaster 50 CG17186 FBgn0038741 FBtr0083858 3 1 1 60 3R 15702125 15702144 GTTGTGGAGGATATACAGGA 58 15702084 15702104 CCACTAGATTGATCTCTTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6300 FBgn0038730 FBtr0083798 3 1 1 80 3R 15598111 15598191 GGCAACTATCATCTGACCA 59 15598049 15598067 AATGGTGGTAAGCAAACCA 59 NA Nonspecific Drosophila melanogaster 50 CG5316 FBgn0038704 FBtr0083760,FBtr0083758 3 2 3 81 3R 15230456 15230569 CAGGGATATAACTCAGCTAACC 59 15230609 15230629 CTTCTCGATGATTTGATTCGC 59 NA Drosophila melanogaster 50 CG3734 FBgn0038700 FBtr0083755 2 1 1 80 3R 15215343 15215424 ACTATTATTCCAGAGCATGC 57 15215466 15215485 TTTGGAAGCTCTCATTTCAG 58 NA Drosophila melanogaster 50 CG14292 FBgn0038658 FBtr0083725 1 1 1 77 3R 14731173 14731191 AGCTACTGTTGGAAATCCC 59 14731114 14731132 AGGAAGGGATTAAAGGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14303 FBgn0038633 FBtr0083659 3 1 1 144 3R 14474625 14474717 GTCAACAGGAAATAAAGGACAG 59 14474822 14474840 AGTACATTGTCCACTGTGC 59 NA Drosophila melanogaster 50 CG7156 FBgn0038588 FBtr0083607 1 1 2 134 3R 14067506 14067524 CAAGAGTCTCCAACTACCC 58 14067313 14067331 ATAGCTTCTTAAGTGGCGA 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG14888 FBgn0038442 FBtr0083298 2 1 1 85 3R 12378114 12378132 TAACCACAACCATCAAGGG 59 12378180 12378277 AATCTGTGTATCAGGTGGTC 59 NA Drosophila melanogaster 50 Gyc-89Da FBgn0038435 FBtr0110963,FBtr0110962 2 2 2 60 3R 12299798 12299816 ACCACGACATGAAGATCAC 59 12299839 12299858 TTGTGCATAATCCAGGTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sb FBgn0003319 FBtr0083250 2 1 1 171 3R 11965602 11966315 AGACACAGAAGAAGCACAC 59 11966448 11966468 GGCAATTGACTACGATTAAGG 59 NA Drosophila melanogaster 50 CG6125 FBgn0038337 FBtr0083105,FBtr0083106 2 2 2 87 3R 11229094 11229170 CCTTAAACAGCATGAATCCAC 59 11229027 11229045 CTCAGATCGTAGTGCATCG 59 NA Drosophila melanogaster 50 mRpS10 FBgn0038307 FBtr0083053,FBtr0113237 1 2 3 108 3R 11055700 11055718 TGGTTTGCTACTACTGCTG 59 11055859 11055877 AGATATGCACCGACTTCAG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Spn5 FBgn0028984 FBtr0083142,FBtr0083141 1 2 2 80 3R 11029204 11029285 TGGAACTTAATCCTATCCTTGC 59 11029145 11029163 AGGTCAGATCATCGAAGGT 59 NA Drosophila melanogaster 50 Zeelin1 FBgn0038294 FBtr0083031,FBtr0083033,FBtr0083032,FBtr0083034 3 4 5 122 3R 11002152 11004016 ACTACAGCCGAACAATTCC 59 11001978 11001996 GCTTGTCCCTCAAGTAGAG 59 NA Drosophila melanogaster 50 CG7262 FBgn0038274 FBtr0083008 2 1 1 213 3R 10722102 10722183 TGTTAACAGTGGACTCTTCC 59 10721908 10721926 CCTTAACGATCCACCTAGC 59 NA DesignRelaxed Drosophila melanogaster 50 btsz FBgn0053555 FBtr0113468,FBtr0091529,FBtr0091531,FBtr0091532,FBtr0091530 2 5 5 100 3R 10634158 10634176 ATAAGCTGAGTGCTTTGGA 58 10634011 10634096 TAGATACACCTTAACGTAGGG 58 NA Drosophila melanogaster 50 l(3)L1231 FBgn0086686 FBtr0082975 3 1 1 103 3R 10471316 10471334 GTATTTGCGAGAACAGCTC 58 10471109 10471250 TGCTATATCATCAGCATCGT 58 NA Nonspecific Drosophila melanogaster 50 RpII15 FBgn0004855 FBtr0082925 2 1 1 60 3R 10135043 10135061 TTGCGATTACAAACAGGAG 58 10135083 10135103 CTCGTGCATAATCTTGTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp313a4 FBgn0038076 FBtr0082667 3 1 1 98 3R 8506088 8506149 GATACCAATGCATCCTGGA 59 8506008 8506026 AGTAGTGCGATTCCTTTCC 59 NA Drosophila melanogaster 50 CG33098 FBgn0053098 FBtr0082580,FBtr0082579 1 2 3 122 3R 8213638 8213708 AGCTGAAGGAAGTCTTCTC 58 8213794 8213812 TCATCTGTTCCAGTAGCTG 58 NA Drosophila melanogaster 50 GstD9 FBgn0038020 FBtr0082608 3 1 1 60 3R 8192399 8192419 GGCTATACTGATTTATCTGGC 58 8192359 8192377 ATCCTTGGGATAAAGGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tango9 FBgn0037971 FBtr0082508 2 1 1 80 3R 7799941 7800041 TCGTCGTGGAGTTATATCC 58 7799879 7799897 GGCAATAGCATGCTAACAG 58 NA Drosophila melanogaster 50 l(3)neo38 FBgn0086910 FBtr0082533,FBtr0110877,FBtr0110876 3 3 3 126 3R 7596969 7596991 GAATATCTCCATACCGTACTCAC 59 7595815 7596883 CTGGTTGAGGACTTCTTCC 59 NA Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082457 3 1 6 71 3R 7417225 7417243 CCAAGAAGCTAAAGATCCG 57 7416979 7416997 AATACTCGTTGGCTACGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG6782 FBgn0037912 FBtr0100464 2 1 4 192 3R 7386919 7390171 GCTGATCACCCTAATTCCC 59 7386745 7386763 TAGGTGATGCAGATCTCGA 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG31374 FBgn0051374 FBtr0082400,FBtr0082401,FBtr0082399 1 3 3 84 3R 7264081 7264157 GAGTATCCTCAAGGAGGAG 57 7264015 7264033 TTCGTCTAGCTTCATGGAG 58 NA Drosophila melanogaster 50 Art1 FBgn0037834 FBtr0082304 2 1 1 84 3R 6613245 6613265 CAAGATTGAGGAGATTGAGCT 59 6613094 6613199 GTAGAACAGGCAGTAACCC 59 NA Drosophila melanogaster 50 CG31391 FBgn0051391 FBtr0082321 3 1 1 60 3R 6530108 6530129 ACTATCCACGATAAGTACTTCC 58 6530069 6530087 TCCAGACTATTTGGATGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6254 FBgn0037794 FBtr0082184 1 1 1 92 3R 5985595 5985613 ATCACAAACTTGTGCACAC 59 5985458 5985542 CTAAATGGATCTTTAACCTCGC 59 NA Drosophila melanogaster 50 CG9793 FBgn0037620 FBtr0081948 3 1 1 188 3R 4554800 4554820 CAAAGCAGGAACTCAAATCAG 59 4554580 4554650 GATCCTCACAGAATTCGCA 59 NA Drosophila melanogaster 50 Dhod FBgn0000447 FBtr0081890,FBtr0081891,FBtr0081889 1 3 3 60 3R 4477366 4477384 TACGTCCAAATCTACACGG 59 4477324 4477344 CCTTAATGTCTTCCACAAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or85d FBgn0037594 FBtr0081872 1 1 1 94 3R 4379497 4379515 TATTAAGAGGGCCCAACAG 58 4379634 4379652 TGTACGAGAGTTGCAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18745 FBgn0042102 FBtr0081777 2 1 1 146 3R 3611008 3611028 AATATAACCGGATACGCAGAG 59 3610825 3610900 AATGGATACTTGGCTGCTC 59 NA Drosophila melanogaster 50 Antp FBgn0000095 FBtr0081648,FBtr0081652,FBtr0081646,FBtr0081651,FBtr0081649,FBtr0081650,FBtr0081647,FBtr0081656,FBtr0081654,FBtr0081653,FBtr0081655 2 11 11 230 3R 2735975 2735993 AGATTAGGCTACGCAACTG 59 2735610 2735629 CAGTTGTTTGTACTCATCGT 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 zen2 FBgn0004054 FBtr0081671 1 1 1 60 3R 2569076 2569096 GAACACAATACACAGGATCAG 58 2569036 2569054 AAGAGCTATTCGAGTCCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1024 FBgn0027514 FBtr0081733 3 1 1 60 3R 2205190 2205208 CCTGTAAACGAACCTAAGC 58 2205148 2205169 TCAAACACCGATCTAGATTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31554 FBgn0051554 FBtr0078637 2 1 1 151 3R 1642560 1642578 AGGATAGGGTTTCTTTCGC 59 1642693 1642711 GTTTGCTCGTCTATTGTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1109 FBgn0046222 FBtr0078713,FBtr0078714 3 2 2 85 3R 1487665 1487683 TGTTAAGTACTGGCAGTCC 58 1487731 1488795 TGGGACTGAAACTTATTCCC 59 NA Drosophila melanogaster 50 MTA1-like FBgn0027951 FBtr0078734,FBtr0078733 1 2 2 90 3R 1466844 1466862 CTCACAATAATTCCCACGC 58 1466659 1466793 GAACTATAGTAACTTCAGTGCC 58 NA Drosophila melanogaster 50 CG14673 FBgn0037352 FBtr0078738 1 1 1 60 3R 1452500 1452518 GATGAGTCCGTAGAGACCT 59 1452458 1452476 TGGTCGTTATCCAATACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31550 FBgn0051550 FBtr0113409 1 1 3 206 3R 1312410 1312428 AAATCTGGAGGCTATCCAG 58 1312598 1313566 ATAAAGAAACCTTGTGGCG 58 NA DesignRelaxed Drosophila melanogaster 50 tacc FBgn0026620 FBtr0089955,FBtr0089951,FBtr0089953,FBtr0089949,FBtr0089952,FBtr0089954,FBtr0089950 2 7 7 135 3R 561270 561373 ATCTGCATGTGAAATACGAG 58 561154 561172 TTCTTCATCTTGTCGTAGC 57 NA Drosophila melanogaster 50 CG41456 FBgn0084018 FBtr0111155 3 1 1 80 3L 24282386 24282405 GAAGAAGGAGATCATGAGTG 57 24282325 24282343 CTTAGGATGTTACGAGGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycH FBgn0022936 FBtr0078439 2 1 1 107 3L 21816054 21816072 GGTGAAGCAATATCAGCAG 58 21816140 21816219 TCCTTATAGAGTTCGCTATCAG 58 NA Drosophila melanogaster 50 S1P FBgn0037105 FBtr0078466 3 1 1 134 3L 21609632 21609650 CTTGACGACAGAGTCAGTC 59 21609458 21609536 GGAAGTGTAAGAAACTTGGGA 59 NA Drosophila melanogaster 50 CG7173 FBgn0037099 FBtr0078380 1 1 1 84 3L 21548909 21548927 ATAATCTGTGGATCCGACG 58 21548777 21548863 TCGTCACACTTATATTGAGGC 59 NA Drosophila melanogaster 50 Mkrn1 FBgn0029152 FBtr0078383,FBtr0078384 1 2 2 68 3L 21524869 21524890 CAGAGCCAGAATGAAATAATCG 59 21524638 21524656 ATAATCTCGCCGATCTACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG7519 FBgn0037087 FBtr0078353 2 1 1 125 3L 21486447 21486531 CACTTTAATCTCATCACCAGC 59 21486618 21486636 AATATCATCGGTAAGCCGG 59 NA Drosophila melanogaster 50 CG7338 FBgn0037073 FBtr0078342 1 1 1 91 3L 21330395 21330414 CAATTGATAATCCAGTGCGG 59 21330468 21330542 TAGCGTTCGAACTTATGCT 59 NA Drosophila melanogaster 50 ko FBgn0020294 FBtr0078324 3 1 1 260 3L 21092786 21092805 CTTAAGTCTGAACTCTTGGC 58 21082319 21092563 TGGCAGCTAGAAAGTTCTG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG5104 FBgn0037009 FBtr0078209 2 1 1 180 3L 20514519 20514537 ACGACATGTCCACTTTGAG 59 20514681 20514774 ATGAGAAAGCAGGTACTGG 58 NA Drosophila melanogaster 50 CG6996 FBgn0036950 FBtr0074822 3 1 1 60 3L 20201024 20201042 CTGACCTTCAATGCAACTC 58 20201066 20201084 GATCGTTCATCTTGGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7646 FBgn0036926 FBtr0074901,FBtr0074900 1 2 2 81 3L 19988537 19988555 TTTCGAATGTACGATGTCG 57 19988600 19988744 GCATGTCATAAATTGCCTG 57 NA Nonspecific Drosophila melanogaster 50 Csas FBgn0052220 FBtr0074911 2 1 1 81 3L 19981544 19981564 CCAAGTATATTCAAGAGGCTG 58 19981428 19981503 CATCGCAGATAATGTGATCTC 58 NA Drosophila melanogaster 50 CG15881 FBgn0036909 FBtr0074879,FBtr0074880 2 2 2 73 3L 19799699 19799718 TACGGATAACCAGTTTAGGG 58 19799807 19799825 TGATGTCCTCGACATTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 asf1 FBgn0029094 FBtr0074947 3 1 1 61 3L 19612559 19612577 TTGTTCTGCTTACCTGCTC 59 19612602 19612620 ATTCACATAGTAGCCCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18135 FBgn0036837 FBtr0075044,FBtr0075043,FBtr0075042,FBtr0075045 2 4 4 60 3L 18984754 18984772 ATGATCGAGTTGGATGTCC 59 18984712 18984733 CGAAATCGTGATAAATCACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32196 FBgn0052196 FBtr0075118 2 1 1 80 3L 18452970 18453047 GGATTTGGATGATCAGGAG 57 18452908 18452926 GAATCAGTGTTCAACAGGT 57 NA Drosophila melanogaster 50 CG6052 FBgn0036747 FBtr0075195 1 1 1 60 3L 17722178 17722196 CCATATCGGACCTAAACCT 58 17722136 17722155 TCGTGCAATATCCTATTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13728 FBgn0036716 FBtr0075238 3 1 1 60 3L 17373722 17373740 ATCAACTCGAATGACTTGC 58 17373680 17373700 CTTCTTGTCTTGGTTCAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cad74A FBgn0036715 FBtr0075240,FBtr0075239 2 2 2 95 3L 17363253 17363333 CGAATGTCACAGAGAATGC 58 17363176 17363194 AAGTAATGGTTCCGGATGG 59 NA Drosophila melanogaster 50 CG6664 FBgn0036685 FBtr0100439,FBtr0075294,FBtr0075295,FBtr0075293 1 4 4 80 3L 17008139 17008158 GATACCTTCAAGACCAAGTG 57 17007996 17008097 TTTGGCTTGAATGATGACTG 58 NA Nonspecific Drosophila melanogaster 50 CG11905 FBgn0036678 FBtr0075305,FBtr0113174,FBtr0075300 2 3 10 196 3L 16922148 16922167 ATGGCTCCTAAGAAAGATGC 59 16921906 16921924 AATGAAATGCTGAAGGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG18814 FBgn0042137 FBtr0075385 1 1 1 113 3L 16363480 16363498 AGTGAACATTTCCTCGGTG 59 16363575 16363648 TAATGGATGGGACTAGCCA 59 NA Drosophila melanogaster 50 Pdh FBgn0011693 FBtr0075427,FBtr0075426,FBtr0114537,FBtr0114536 2 4 4 131 3L 16346822 16346840 CATCATTCCCGTTTACGGA 59 16346645 16346663 ATGTCCGTCATTGTAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5222 FBgn0036570 FBtr0075495 1 1 1 102 3L 16097460 16097478 TAACCATGTGTTCTCCGAG 58 16097319 16097337 GATAAAGTGAACAGCGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 brm FBgn0000212 FBtr0075526,FBtr0075524,FBtr0075525,FBtr0075523 2 4 4 160 3L 15964327 15964406 GATACCATTCTAGGTCGAGG 58 15964186 15964204 CGATTCTTACGCTTTCGTC 58 NA Drosophila melanogaster 50 CG17839 FBgn0036454 FBtr0075695 2 1 2 144 3L 14872647 14873311 CGAAGTTAATGTCAGATGGGA 59 14873417 14873435 CATCGAGGAACCTGAATCC 59 NA Drosophila melanogaster 50 HGTX FBgn0040318 FBtr0114619,FBtr0075720 1 2 2 93 3L 14577188 14583109 CAGGTTAAGGTCTGGTTCC 59 14577113 14577131 CCATATCGTCCTGTTTCCT 58 NA Drosophila melanogaster 50 Sox21a FBgn0036411 FBtr0075748 3 1 1 63 3L 14099834 14099852 ATTCGAATACTGGAAGCCA 58 14099789 14099807 ATGAAAGCGTTCATTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32138 FBgn0052138 FBtr0075776,FBtr0075775,FBtr0114573 3 3 3 84 3L 14060635 14060721 GAAACATTGCAATCTCCCG 59 14060769 14060787 AGTTTCTTCAGGTCCAGAC 58 NA Drosophila melanogaster 50 CG8757 FBgn0036380 FBtr0075803 1 1 1 89 3L 13834551 13834569 AACAACATATGCCCATGCT 59 13834406 13834501 TATTATGGACCTGAACATTGGG 59 NA Drosophila melanogaster 50 stv FBgn0086708 FBtr0075806,FBtr0075809,FBtr0075807 1 3 5 83 3L 13474163 13474181 GACATGGACAACATGTTCC 58 13474228 13474324 GAAACCAAAGTGTGAGTCG 58 NA Drosophila melanogaster 50 CG14110 FBgn0036352 FBtr0075844 3 1 1 60 3L 13378113 13378131 TCCCGTAAAGATGAAGAGC 59 13378154 13378173 TGATATAGGCATTACGTCCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34242 FBgn0085271 FBtr0112436 3 1 1 116 3L 12527159 12527177 TTAGCTAAATGGCAGTCCT 58 12527257 12527275 TCTCAGTGTTAACCATGGG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG9760 FBgn0036259 FBtr0076021 3 1 1 137 3L 12151110 12151128 ACTCCATCGGGATATTGTG 58 12150941 12150960 AATTGTGCACATTTCCACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG18490 FBgn0036149 FBtr0076167,FBtr0076166 3 2 2 171 3L 11219659 11219744 GATGCGTCAGTAAACAAGC 59 11219876 11219897 CGAAAGGTATTTCATCAACGTC 59 NA Drosophila melanogaster 50 Mnf FBgn0036134 FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228 1 5 5 98 3L 11109449 11109535 ACAATACACAGGATCTGTTCC 59 11109371 11109389 ATATGGCCTGAACGATGAG 59 NA Drosophila melanogaster 50 Mnf FBgn0036134 FBtr0076226,FBtr0076224,FBtr0076227,FBtr0076225,FBtr0076228 3 5 5 145 3L 11108508 11108591 CAGTACAGTAGTGGCAGTC 59 11108381 11108399 ACATGGTTCCTCTTTAGCG 59 NA Drosophila melanogaster 50 vsg FBgn0045823 FBtr0076399 2 1 4 188 3L 9707709 9708850 ATTTGTGCGAAGAAGTGAC 58 9709002 9709020 TGGAAGTTGTGGTCTTCTC 59 NA Drosophila melanogaster 50 CG33702 FBgn0053702 FBtr0091690 1 1 1 60 3L 9506001 9506019 AACGATAAGACGCTGAAGG 59 9505959 9505978 CCACAAGTTTGTATTCACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsp67Ba FBgn0001227 FBtr0076495 2 1 1 86 3L 9371770 9371788 CTTTAAATCCGACTGCACC 58 9371702 9371720 TCTCTGTCTCTTCCTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nwk FBgn0035966 FBtr0076532 1 1 1 121 3L 9132027 9132046 AGATCTCATCGCAGTATCTC 58 9132220 9132238 TTTCTCATTCTCCTCGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Doc2 FBgn0035956 FBtr0076547,FBtr0100367 3 2 2 65 3L 9007825 9007843 AAGTTGACCAATAACACGC 58 9007700 9007718 CTGATACTTGTGCATGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5741 FBgn0035937 FBtr0076565 3 1 1 87 3L 8927824 8927842 AGGATTCTGATCTTCAGGC 58 8927686 8927773 TCATCTTCAGACTTGACGC 59 NA Drosophila melanogaster 50 Tsp66E FBgn0035936 FBtr0076507,FBtr0076508,FBtr0076506 1 3 3 84 3L 8919887 8921127 GCATTGAGCAATTTACACAG 58 8921174 8921192 CTCATGAAGAACATGACGG 58 NA Drosophila melanogaster 50 Idh FBgn0001248 FBtr0114547,FBtr0076670 1 2 9 114 3L 8351125 8351143 TAATGAAAGGATGTCCGCC 59 8350919 8350937 TTGGCTCTTAATGGAGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7182 FBgn0035878 FBtr0076677 3 1 1 61 3L 8338727 8338745 CCCATCAATATCACACGGA 59 8338684 8338702 GTAGCTGGGTATGGATAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8005 FBgn0035854 FBtr0076695 2 1 1 61 3L 8192043 8192062 GTCGAAGATTATTCATCGGT 57 8192083 8192104 CCCAATAGTAAATGGAACTAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7979 FBgn0035848 FBtr0076690 1 1 1 90 3L 8175014 8175032 CTATGCGTATGCCAAACAG 58 8175373 8175391 TCGTCCATCGTTCATATGC 59 NA DesignNoJunction Drosophila melanogaster 50 nmo FBgn0011817 FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758 2 6 6 142 3L 8040250 8040352 GTCTTCGATCCGGATAAGC 59 8040457 8040476 AAATCAGCCGTATACTGACG 59 NA Drosophila melanogaster 50 Clk FBgn0023076 FBtr0100132,FBtr0076785 2 2 3 172 3L 7761742 7761819 AATCATAATGAGGCCACCG 59 7761588 7761607 GAGGTAATACTTTCCGAGGC 59 NA Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112700,FBtr0112693 2 2 10 97 3L 7655623 7655641 AACGACAATTACCACTCAG 57 7654580 7654598 TTGAGTTTGGTAAATCGCC 58 NA DesignNoJunction Drosophila melanogaster 50 mus312 FBgn0002909 FBtr0076839 2 1 3 86 3L 7324322 7324400 AGCGACGAAGTAAAGACTG 59 7324516 7324536 ATCGAACTCTTGTGTTAGGTC 59 NA Drosophila melanogaster 50 Cpr65Eb FBgn0035736 FBtr0076928 1 1 1 72 3L 7081512 7081530 GCTCATCACAGTACTACAC 57 7081458 7081476 TGGAATCCGTTCTCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32388 FBgn0045806 FBtr0076933 1 1 1 156 3L 6976930 6977010 GAAATTCAAATGTCTGCAGC 58 6976793 6976812 GGCTTTATAATGTCTGTGCA 58 NA Nonspecific, InUTR Drosophila melanogaster 50 CG10077 FBgn0035720 FBtr0076941,FBtr0076940 2 2 2 66 3L 6947251 6947269 CAGGTACTCATGTGGTCAG 59 6947203 6947222 TATTAAGGAATTCCTCGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mad2 FBgn0035640 FBtr0077113 2 1 1 84 3L 5805866 5805886 GGCTAACCATTCTAATGTCCA 59 5805741 5805820 TTCGAGAGCCATTCTTCAG 59 NA Drosophila melanogaster 50 CG4769 FBgn0035600 FBtr0077144 3 1 1 89 3L 5355077 5355209 TTGTACAACGAGGTCATCG 59 5355262 5355280 AGTCCACTTCAGGAAAGTG 59 NA Drosophila melanogaster 50 shep FBgn0052423 FBtr0077172,FBtr0077175,FBtr0077173,FBtr0077174 3 4 4 80 3L 5156244 5156459 CAGGTAGATGATCAGACTTCG 59 5156184 5156204 TTTGTATGAGGTTACTCCCAG 59 NA Drosophila melanogaster 50 CG14998 FBgn0035500 FBtr0073267,FBtr0073265,FBtr0073268,FBtr0113135,FBtr0073269,FBtr0073266 3 6 6 112 3L 4127071 4127089 GACAAACATGTCCACATCC 58 4126920 4126997 GTTTGTTAATCTCCTCGAGAG 58 NA Drosophila melanogaster 50 Gr64e FBgn0045476 FBtr0073199,FBtr0073200 1 2 2 94 3L 4034471 4034489 TCTGAAGTTGCCCAAAGAG 59 4034547 4034625 TCATAATGTGCTCCACCAG 59 NA Nonspecific Drosophila melanogaster 50 Gr64d FBgn0035486 FBtr0073198 1 1 2 96 3L 4032380 4032469 ATACCATGGGCTCTTTGAG 59 4032529 4032547 GTTTCCCGGATGATATGGG 59 NA Nonspecific Drosophila melanogaster 50 armi FBgn0041164 FBtr0073126,FBtr0100641 1 2 2 88 3L 3463216 3463234 AAGACAGACTTGCCTACAG 58 3463283 3463370 CTCGTAAATTTGGAATACTGGC 59 NA Drosophila melanogaster 50 dro3 FBgn0052283 FBtr0073060 3 1 1 64 3L 3315066 3315084 TGCTGTAATGACCATTGTC 57 3315112 3315130 TTCCAGATAGGCAATCACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12082 FBgn0035402 FBtr0073114 3 1 1 160 3L 3147627 3147646 GATAAGAAGCTGCCCTATCC 59 3147425 3147443 TTATCTGCGTACTTCGACG 59 NA DesignNoJunction Drosophila melanogaster 50 Shab FBgn0003383 FBtr0072975,FBtr0112829 3 2 4 85 3L 2941551 2941572 CTCCTTCCATCATATCAATCTG 58 2941618 2942577 TTGTTTGCTTTCCTGTGTC 58 NA Drosophila melanogaster 50 CG14950 FBgn0035364 FBtr0072947 3 1 1 82 3L 2658368 2658488 GTAGAGGTGGAGCTAATCTG 58 2658305 2658323 ATGTAGCACTTCACGTACG 59 NA DesignRelaxed Drosophila melanogaster 50 CG16985 FBgn0035355 FBtr0072929 1 1 1 140 3L 2599821 2599903 TTATGTCGAAAGGATCCCA 57 2600007 2600025 GAATGCAGTCCAAATAGGC 58 NA Drosophila melanogaster 50 CG13924 FBgn0035286 FBtr0072835 1 1 1 60 3L 1870902 1870920 GTGGCCAGCTATATTCCAG 59 1870941 1870962 CCTTCTTGTAGTAAATGCTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi18S-841a FBgn0086669 FBtr0091766 1 1 1 76 2R 17214615 17214635 GTAAGCTTGCTAGAATAAGGG 58 17214673 17214691 GAATTCAATGCGGCATCTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33409 FBgn0053409 FBtr0086401 1 1 1 62 2R 15633062 15633080 AATACATCGGTTCTCGTCC 59 15633018 15633036 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33421 FBgn0053421 FBtr0086413 1 1 1 62 2R 15628640 15628658 AATACATCGGTTCTCGTCC 59 15628596 15628614 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Nplp1 FBgn0035092 FBtr0072443 3 1 2 107 2R 20925012 20925030 TCGACTGGAACGATTATCG 59 20926620 20926639 GAAACACTGCTTACAAACGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG2857 FBgn0035078 FBtr0072419 2 1 1 60 2R 20787170 20787189 GAATGTTGCCTACTCTACTC 57 20787129 20787149 TCATAGATGGAGAAGTACACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Start1 FBgn0035028 FBtr0089867 2 1 2 135 2R 20464508 20464526 CGAAGCGAATAACATGACG 59 20464625 20464688 AAGAGTCAACCGACTTGTG 59 NA Drosophila melanogaster 50 itp FBgn0035023 FBtr0072306 1 1 2 80 2R 20443081 20443813 CACCGATTATGCAAGAAAGAC 59 20443853 20443873 TTCCTCTTCGGGTATTAACAG 59 NA Drosophila melanogaster 50 CG3494 FBgn0035008 FBtr0072295,FBtr0072296 1 2 2 60 2R 20362485 20362503 CATCGATGCTAGTGAATCG 58 20362525 20362545 TCCCAAGTTCAATCTCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tamo FBgn0041582 FBtr0072281,FBtr0072282 3 2 2 152 2R 20017461 20017544 CTCTCAAGACCTATTCGGG 58 20017327 20017346 AAACATTCGTAACCTGATCC 57 NA Drosophila melanogaster 50 Tal FBgn0023477 FBtr0072141 1 1 1 192 2R 19828585 19828603 AACATCTATAAGCCCACGG 59 19828818 19828836 CAACCTTCAGGATTTCCGT 59 NA DesignNoJunction Drosophila melanogaster 50 Or59c FBgn0034866 FBtr0072020 2 1 1 60 2R 19360472 19360492 TAGTGTTCATCTCCTTGTTCC 59 19360432 19360452 AGATTAGCTATGCGATCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k09913 FBgn0021979 FBtr0071959,FBtr0071960,FBtr0071958,FBtr0071961 3 4 4 100 2R 18958339 18958357 TGAGATGGGATTCGATGTG 59 18958497 18958515 GGAATCGAATAGTCTCGGC 59 NA DesignNoJunction Drosophila melanogaster 50 ppa FBgn0020257 FBtr0071924 1 1 1 60 2R 18575397 18575416 TGTAAACAGATCACGGACAC 59 18575356 18575377 TCTCAAGATTCCTTAGATGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33143 FBgn0053143 FBtr0071858 2 1 2 200 2R 18508621 18508639 GTTTGTGCTCATAGCTGTG 59 18509801 18515319 TGTACAACCCTGTAACTGTC 59 NA Drosophila melanogaster 50 Vps20 FBgn0034744 FBtr0071857,FBtr0071856 3 2 2 85 2R 18496532 18496550 CGAAATGCTTGACATCGAC 59 18496599 18496617 GTATGGCGTCTATTTCCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3290 FBgn0034711 FBtr0071782 3 1 1 121 2R 18094151 18094238 TTGTGTTCATAGAGGGTGG 58 18094048 18094067 GATGTTGGTCATTTCACGAG 59 NA Drosophila melanogaster 50 Vrp1 FBgn0034695 FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104 1 7 7 86 2R 17998431 17998841 CAACCTAAATATCTCGTTAGGC 58 17998366 17998384 AGACTGCTGTTTAAGGACG 59 NA Drosophila melanogaster 50 CG13488 FBgn0034670 FBtr0071723 1 1 1 60 2R 17839435 17839453 CACTCAGCTAGTTTCCCAG 59 17839477 17839495 GACGATCAGATCTTCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10080 FBgn0034641 FBtr0071658 3 1 1 83 2R 17514520 17514540 GTCTGAGCTTCCAATTTAAGG 58 17514582 17514668 GTACGGAAATGACATTGTACAG 59 NA Drosophila melanogaster 50 Fkbp13 FBgn0010470 FBtr0071702,FBtr0071703 3 2 2 70 2R 17375559 17375577 AATGTGTTCAAGGAGATCG 57 17375334 17375526 TTTAGATACTCGCTGACCTC 58 NA DesignRelaxed Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457 2 11 15 113 2R 15365201 15366256 TTCACTCTGGTCAAACCAG 59 15366332 15366351 AGAGTTTGGAGAAGAAGCTC 59 NA Drosophila melanogaster 50 wbl FBgn0004003 FBtr0086510 1 1 1 60 2R 15137424 15137442 AGCTGAGTTTCGAGAAGAC 59 15137463 15137484 GCGATATCAAATTTCACTACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18609 FBgn0034382 FBtr0086643 2 1 1 87 2R 14630818 14630837 AGGTGCTATACAATGGTCTC 58 14630688 14630706 AAGCTTTCTATGCAGTGCA 59 NA DesignNoJunction Drosophila melanogaster 50 IM2 FBgn0025583 FBtr0086664 3 1 1 115 2R 14274183 14274201 GTTCTTCTCAGTCGTCACC 59 14274341 14274360 CATTGCAGTATTTGCAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lolal FBgn0022238 FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778 3 4 4 123 2R 14042986 14043404 TCACAGATGTAACACTCGC 59 14042819 14042838 ATAATGATCGGATGCTTCGA 59 NA Drosophila melanogaster 50 CG30110 FBgn0050110 FBtr0086820 2 1 1 60 2R 13768647 13768667 TAGTAACCCAAAGGTTAGAGG 58 13768607 13768625 TGCATTCGCATCTTTAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10931 FBgn0034274 FBtr0089545 2 1 1 60 2R 13637206 13637225 ATATGTGAAGTTCTCACCGA 58 13637248 13637266 AAGGGTGTTGTTCAATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6406 FBgn0034269 FBtr0086884,FBtr0086883 2 2 2 115 2R 13623770 13623844 AGTTATGGATCTGATCCTGC 58 13623674 13623692 AACATGGCGAAATAGATGG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15609 FBgn0034180 FBtr0114626,FBtr0087019,FBtr0114627 2 3 6 111 2R 12900872 12900892 GGCTTTAGTGAAATTACGGAC 59 12900271 12900799 ACGAAGGTACACTTTGAGG 59 NA Drosophila melanogaster 50 CG34457 FBgn0085486 FBtr0112763 3 1 1 111 2R 12558653 12558730 ACCGCAGTAAATTATCATGC 58 12558803 12558822 GGTATATCTTCTCCTTCGCT 58 NA Drosophila melanogaster 50 CG4409 FBgn0034128 FBtr0113085 1 1 1 111 2R 12331525 12331543 GTACGCCCTATTCTTCGAC 59 12331618 12332182 CATTGAGTTCTGCAAACCG 59 NA Drosophila melanogaster 50 CG7786 FBgn0034096 FBtr0087190 1 1 1 99 2R 12122337 12122355 GAACAATCCGTCCTACTCC 59 12122256 12122274 TAGAGTTTCCGACGATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shark FBgn0015295 FBtr0087244 1 1 1 95 2R 12087846 12087864 ATGCTGCAGTACATACTGG 59 12087710 12087787 CAGATAATGCATGCCACAC 59 NA Drosophila melanogaster 50 CG33460 FBgn0053460 FBtr0100642 2 1 1 142 2R 11582008 11582028 GATATCCCAATGAATTGCCAG 59 11582131 11582222 AACCGGCATAATGTAGTCTG 59 NA Drosophila melanogaster 50 CG12963 FBgn0034031 FBtr0113082 2 1 4 81 2R 11443854 11443932 TTGATAAGGGCCTATATCTGTC 58 11443973 11449328 CATTACGATCAGATTCGTGC 59 NA Drosophila melanogaster 50 CG10202 FBgn0033969 FBtr0087464 2 1 1 60 2R 10707361 10707379 GGAACTCCTGAAGACACTC 59 10707319 10707337 GTTCTTGATCTGCAGATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr51A FBgn0033942 FBtr0087514 3 1 1 60 2R 10400297 10400315 ATGGTCCTTCGTTCAATCC 59 10400255 10400274 TATTTGCCGATCATAGAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Als FBgn0033920 FBtr0087540 2 1 1 80 2R 10158935 10158953 TAGCCCTTCAGAATTTGGC 59 10158994 10159075 CATATAGACGAACGAAATGTCC 59 NA Drosophila melanogaster 50 Cp1 FBgn0013770 FBtr0087592,FBtr0087591,FBtr0087593 1 3 3 174 2R 9854325 9854343 GAACAAGCACAAGATTGCC 59 9854541 9854559 TCCCTTGAAGCTTTCATCG 59 NA DesignNoJunction Drosophila melanogaster 50 synaptogyrin FBgn0033876 FBtr0087645 2 1 1 60 2R 9731508 9731526 AGAAAGCGTTATGTCATGG 57 9731395 9731414 CGAAGTACATGAATGTCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG18368 FBgn0033864 FBtr0087627 3 1 1 60 2R 9555880 9555899 CCTCTCACAGATCATATCCA 57 9555921 9555940 CGTTTGGGTTCCTTAAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10814 FBgn0033830 FBtr0087720 2 1 1 76 2R 9264910 9264928 GTATAGAGTGGTCCGATGG 58 9264852 9264870 ATTCGCGTATGAGAAGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17042 FBgn0033823 FBtr0087752 1 1 1 60 2R 9152835 9152854 AGACTGGATAAACTGGAACG 59 9152875 9152959 GCTTGTATATGATCTTCTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG8776 FBgn0033764 FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869 3 5 5 98 2R 8548250 8548271 CATAAGGTCAACTTCTATAGCC 58 8548117 8548192 TACCAGAAAGCTGAAGAAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG8816 FBgn0033754 FBtr0087891 2 1 1 96 2R 8456978 8456996 GTACGATTGTCCCATTCTG 57 8456845 8456863 ATCACAGCCATGATACTCG 59 NA DesignNoJunction Drosophila melanogaster 50 fdl FBgn0045063 FBtr0087946,FBtr0087947 1 2 2 123 2R 8376192 8376277 GAAAGAAGCAGGTACTGGG 59 8376087 8376105 CTAGGATCAGTCCACAAGC 59 NA Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0087931,FBtr0087929,FBtr0087930 2 3 6 61 2R 8337239 8337257 CAGATTAGCAGCGATATGC 58 8337282 8339492 TATTCGCATTTGCTTGCAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 SIP2 FBgn0061197 FBtr0089670,FBtr0089669,FBtr0089671,FBtr0089668 2 4 4 97 2R 8191550 8191640 CAGATAAGCGATCTAAGGGAG 59 8191473 8191491 ATCTTGGACACTTCCTTGC 59 NA Drosophila melanogaster 50 SIP2 FBgn0061197 FBtr0089670,FBtr0089669,FBtr0089671,FBtr0089668 3 4 4 97 2R 8193373 8193451 AGACAAAGCTACATGGTCTC 59 8193295 8193313 TGAGCCTACCTTTGTTTGG 59 NA Drosophila melanogaster 50 RpS11 FBgn0033699 FBtr0088005,FBtr0088007,FBtr0088006 3 3 3 127 2R 8087085 8087348 CTGTGTTCAGAGATGTTGAG 58 8086977 8086996 CTTCTTGAAGCTCTTCTTGG 58 NA Drosophila melanogaster 50 CG13211 FBgn0033613 FBtr0088172 1 1 2 121 2R 7184849 7184867 ATCCAACATGGTTGACCTC 59 7182270 7182288 ACAGCTTGTAGCCAAAGAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG18335 FBgn0033610 FBtr0088177 3 1 1 60 2R 7178109 7178129 TTACCGACATCCCATATTACC 59 7178069 7178088 AATCTGACTCACTTTGTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 shn FBgn0003396 FBtr0088099,FBtr0088100,FBtr0088101,FBtr0088098 1 4 4 101 2R 7098299 7098384 GGCAAGCAAGTAAATGTGG 59 7098446 7098467 CTTCTTCTGCAACAATATCTCC 59 NA Drosophila melanogaster 50 CG7686 FBgn0027525 FBtr0088245 3 1 1 60 2R 6725378 6725396 GAGTACTCCATGTCCTCCA 59 6725336 6725354 GATCGTCCAATAGGGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 1 12 12 88 2R 6499952 6500255 GCATATGGACATGTATAACTCG 58 6500304 6500322 TATAGTGCGGTTCCTTCTG 58 NA Drosophila melanogaster 50 CG12909 FBgn0033507 FBtr0088348 2 1 1 65 2R 6198385 6198404 ACTAAGATCGTTACCAAGCA 58 6198432 6198450 CTTGAGCAGCTTCTTACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pka-R2 FBgn0022382 FBtr0112901 3 1 5 93 2R 5884718 5885219 CAAGCTAGCATTCCTAGAC 57 5884643 5884662 CATTTGCTCATAGATCACGA 57 NA Drosophila melanogaster 50 CG10459 FBgn0033440 FBtr0088468 2 1 1 60 2R 5595784 5595803 AACAAGGGAATCTACGTGTG 59 5595824 5595844 TGTCGTAGTCGTATTTGAAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL31 FBgn0025286 FBtr0088526,FBtr0088525 1 2 3 113 2R 5475179 5475197 TCTGAACAAGCACATCTGG 59 5475343 5475362 TAAGTGTACAGCTTGTTGGG 59 NA DesignNoJunction Drosophila melanogaster 50 Rep2 FBgn0028408 FBtr0112930,FBtr0088597 3 2 2 148 2R 5184910 5184928 TTGTTCTGGAGTGTGATGG 59 5185039 5185788 CGGTATAGCTGATATGGCAG 59 NA Drosophila melanogaster 50 Su(var)2-10 FBgn0003612 FBtr0088577,FBtr0088576,FBtr0088570,FBtr0088571,FBtr0088572,FBtr0088578 3 6 9 80 2R 5005350 5005432 AGCTGCCTAATGTCATTCC 59 5005475 5005494 CATTGGACGTGACATTAACG 59 NA Drosophila melanogaster 50 CG8172 FBgn0033362 FBtr0088667,FBtr0113057 2 2 3 91 2R 4898800 4898818 CATGATCTGGTCTTGTTGC 58 4896715 4898745 AGTGTATTATGTCGCTCGT 58 NA Drosophila melanogaster 50 lin FBgn0002552 FBtr0088651 1 1 1 60 2R 4803487 4803505 CAAGCAAGAGCTGAATGAC 59 4803527 4803547 CTCGAAGTTAAATAGCTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8690 FBgn0033297 FBtr0088752 2 1 1 127 2R 4360989 4361010 CACACTTGAAGATATACAAGGC 59 4361098 4361176 CGATTTGGTCAGAGATCGT 59 NA Drosophila melanogaster 50 CG30369 FBgn0050369 FBtr0088795 3 1 1 218 2R 4146917 4146935 GTCCTTTGGTCGAGTTCTC 59 4147117 4147135 CTAAGATCACGAGGAGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pnut FBgn0013726 FBtr0088793,FBtr0088792 2 2 2 60 2R 4126447 4126468 GAGGTGCATCTATTTAAGAAGC 59 4126488 4126507 AGATCTTGATCTTGTGCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11508 FBgn0033267 FBtr0088817,FBtr0114490,FBtr0088818 1 3 3 60 2R 4017216 4017234 CAGTACGTTTAATCGCAGG 58 4017174 4017192 CACGATGAAGCTATAGCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sut1 FBgn0028563 FBtr0088777 1 1 1 165 2R 3972208 3972226 TTGGTGTAATCAGACCCTG 58 3972355 3972567 AAGAAAGCATGCTTTCCTG 58 NA Drosophila melanogaster 50 CG12769 FBgn0033252 FBtr0088828,FBtr0088827 2 2 2 120 2R 3942343 3942423 CCTCACTGATCAAGGTCTC 59 3942241 3942259 TTGTTGTTACTCTCCAGCG 59 NA Drosophila melanogaster 50 CG1882 FBgn0033226 FBtr0088835,FBtr0088837,FBtr0088834,FBtr0088836 2 4 4 63 2R 3700908 3700926 CTTCTTCGTGGATATCGGG 59 3700953 3700971 ATTCATGCTGATGGTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1882 FBgn0033226 FBtr0088835,FBtr0088837,FBtr0088834,FBtr0088836 1 4 4 62 2R 3701151 3701169 ATTTGTGAAATCGGTGGAG 58 3701195 3701213 CCCAACAGAATCATGTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1941 FBgn0033214 FBtr0088927 3 1 1 124 2R 3598910 3598988 CATTAGGACAGGGTCTTCG 59 3599073 3599094 CCGTTATCCTCTTTACAAAGTC 58 NA Drosophila melanogaster 50 CG30491 FBgn0050491 FBtr0088919 2 1 1 80 2R 3543594 3543670 GATCTACTCAAGAAATCCTCAC 58 3543710 3543729 GCCAGTGTTTATTTCTCCTC 58 NA Drosophila melanogaster 50 Or43a FBgn0026389 FBtr0089051 3 1 1 83 2R 3120819 3120932 CCGATGGAGATAAGAGTCG 59 3120754 3120772 AAAGTAGGAGTAGGACGCA 59 NA Drosophila melanogaster 50 Tsp42Ek FBgn0033133 FBtr0089031 2 1 1 100 2R 2931522 2931541 ATACATAGAGAAGTTCGCCG 59 2931604 2931723 AACACTCGTACACTGTCTG 59 NA Drosophila melanogaster 50 Tsp42Ea FBgn0029508 FBtr0086172,FBtr0086171,FBtr0086173 2 3 3 109 2R 2890788 2890806 CAGAAGGACAAGTACCTGG 59 2890878 2890963 CAGCATTTCATGCTGATCTG 59 NA Drosophila melanogaster 50 CG30431 FBgn0050431 FBtr0085991 2 1 1 61 2R 2091560 2091579 ATGATATTCCCTCGTACTGG 58 2091603 2091621 ATGATGCGGAGTGTTTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Src42A FBgn0004603 FBtr0085968,FBtr0085967 1 2 2 80 2R 1896789 1896808 TACGGTTAAGCATTATCGCA 59 1896851 1896936 TGAAGGGTTCTGAATGTCG 59 NA Drosophila melanogaster 50 His-Psi:CR33811 FBgn0053811 FBtr0091815 1 1 1 60 2L 21439014 21439033 GAATTATTCCGCGTCATCTG 59 21439056 21439074 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR33315 FBgn0053315 FBtr0081172 3 1 1 81 2L 19075368 19075386 CAACCATCTGTTCCATCTG 58 19075305 19075323 GAAGTCGTCACTCACTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41121 FBgn0069930 FBtr0111251,FBtr0111250 3 2 2 90 2L 22708255 22708273 GTAGTGATGTATCTCCGCT 58 22709300 22709318 CTGTTAGGTTGTCCTTCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2225 FBgn0032957 FBtr0100618,FBtr0085918,FBtr0085914,FBtr0085915,FBtr0085917 2 5 5 107 2L 21669234 21669381 GTTACAACGGTAACGATCAG 58 21669146 21669166 CACACCCATAGCTTAAATCTG 58 NA Drosophila melanogaster 50 His4:CG33905 FBgn0053905 FBtr0091909 1 1 1 60 2L 21434850 21434868 GAACGTAATTCGTGATGCC 59 21434808 21434826 GGCTGTAACTGTCTTCCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His3:CG31613 FBgn0051613 FBtr0085894 1 1 1 60 2L 21425563 21425581 TCGAAGATACCAACTTGTG 57 21425605 21425623 ATGTCTTTGGGCATTATGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Mio FBgn0032940 FBtr0081524,FBtr0081527,FBtr0081528,FBtr0081526,FBtr0081525 2 5 5 84 2L 21286543 21286562 TAGTCTTGATGAGCTACGTC 58 21286415 21286496 ATTTGTAACAGCTGGACGA 59 NA Drosophila melanogaster 50 CG31626 FBgn0051626 FBtr0081485 1 1 2 62 2L 21233482 21233635 GAAACTCTTCGTCTTCGCT 59 21233438 21233456 TTAAGGTGGGAAACATCGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG9328 FBgn0032886 FBtr0081416,FBtr0081415 2 2 2 116 2L 20813271 20813289 GATCCTGCCTAAGAAGCTC 59 20813444 20813462 TCTGATTTCTGGTTCAGCA 58 NA DesignNoJunction Drosophila melanogaster 50 cad FBgn0000251 FBtr0081413,FBtr0081412 2 2 2 102 2L 20771294 20771313 CAGATGTACTACAACTCCCA 58 20771378 20771396 TCTGAACGAAGTTATCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13958 FBgn0032825 FBtr0081295 2 1 1 60 2L 19828687 19828706 AACTATGTGCTCTTCAACCC 59 19828729 19828747 TGCGTATCTTGTACTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10132 FBgn0032798 FBtr0081247 1 1 1 81 2L 19524104 19524122 GGTAACTATGAGGCAGCAG 59 19524164 19524249 TGAGAGTGACCTTAAACTTTCC 59 NA Drosophila melanogaster 50 CadN FBgn0015609 FBtr0081014,FBtr0100313,FBtr0081020,FBtr0100314,FBtr0081019,FBtr0081013 1 6 12 92 2L 17664218 17665390 ACCATTATGCAGGTTACGG 59 17664144 17664162 ATTATCCGGATCAATGCCC 59 NA Drosophila melanogaster 50 Ugt36Bc FBgn0040260 FBtr0080911,FBtr0080912 3 2 2 135 2L 16800511 16800609 AGTTCTATGACCGTCTTTGG 59 16800707 16800725 ATTACTCCAGGCACATTCG 59 NA Drosophila melanogaster 50 CG5968 FBgn0032588 FBtr0080872 1 1 1 60 2L 16549560 16549578 GAATCTCCGGAGAAGTCAC 59 16549518 16549536 ACGATAAAGGAGTCTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4793 FBgn0028514 FBtr0080794 3 1 2 86 2L 15926120 15926141 GATCATGTTATCAGGCTTAGTG 58 15926991 15927010 GTTTATGGGATTATGGAGGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG18477 FBgn0028864 FBtr0080756 1 1 1 60 2L 15662488 15662506 CTTGCCAATAGTCAGTACG 57 15662529 15662548 AATGTATGTTGATCCCAACG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 ms(2)35Ci FBgn0011239 FBtr0080731 3 1 2 63 2L 15293140 15293219 GATTGCCTTTGTATCTGCG 59 15293246 15293264 TCACTAAACCTCCGATTGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG33679 FBgn0053679 FBtr0091659 2 1 1 60 2L 15058455 15058476 CAACATACACGTTAAGCTTCTG 59 15058497 15058515 AGTGATGAATCTCACGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32971 FBgn0052971 FBtr0080621,FBtr0114463,FBtr0114462 1 3 3 60 2L 14277528 14277548 CTAAAGGATAACGTCCTAAGC 57 14277567 14277588 GGGAAACTAATTTAAGGAGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 smi35A FBgn0016930 FBtr0100448,FBtr0100447,FBtr0089288,FBtr0089290,FBtr0089289 3 5 5 91 2L 14195795 14195814 CGGATGGATCTCATAATGTC 57 14189224 14195741 CAGGTTCAAGCTCATTAGC 58 NA Drosophila melanogaster 50 bgm FBgn0027348 FBtr0080590 3 1 1 80 2L 14015967 14015986 AATTATGGCGACTATCCTGC 59 14016026 14016144 CTGCTCATATTGTTTGTAGGTG 59 NA Drosophila melanogaster 50 CG18146 FBgn0028939 FBtr0080589 1 1 2 85 2L 13980364 13980382 TAACAATGCGTAAGCACCA 59 13980429 13980510 CAAGTAAGTCTCAGTTCTGGT 59 NA Drosophila melanogaster 50 CG16873 FBgn0028936 FBtr0080586 3 1 1 81 2L 13971670 13971747 CGATTGCTATCAGAAGTGC 58 13971791 13971810 CTCATGGTAGGTATATCCCG 58 NA Drosophila melanogaster 50 CAH1 FBgn0027844 FBtr0080539 1 1 1 93 2L 13808959 13809044 TCAATCCTGGCTATTGCTG 59 13809100 13809119 TGCTCCAGCTTAAAGATCTG 59 NA Drosophila melanogaster 50 Rab6 FBgn0015797 FBtr0080361 1 1 1 60 2L 12108552 12108571 CTGATACCCTCGTACATACG 59 12108511 12108530 TGTTGGTGATATCGTAAACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RfC38 FBgn0028700 FBtr0080225 2 1 1 71 2L 11129719 11129737 ATCGATCTCATCAAGCAGG 59 11129666 11129684 AATCACCTTGAATTCCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Csl4 FBgn0032346 FBtr0080226 3 1 1 155 2L 11123438 11123456 GGATGAGACTGTAGTCTGC 59 11123247 11123319 ACCACCTGGCATTTATCAC 59 NA Drosophila melanogaster 50 CG14069 FBgn0032315 FBtr0080175 3 1 1 61 2L 10910489 10910509 CGGATTGTTAATGTTCATCCC 59 10910448 10910466 ACCAGTTGGCTATTTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6750 FBgn0032292 FBtr0080122 1 1 1 60 2L 10731935 10731954 GGGAAACTTTATTAACGTGC 57 10731894 10731912 AAACATCCAGTTGATCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31716 FBgn0051716 FBtr0080010,FBtr0080013,FBtr0080011,FBtr0080014,FBtr0080009,FBtr0080012 1 6 6 83 2L 10400605 10400623 AAGTCGAAGGATGCTTACC 59 10400669 10400743 ATAGCGCATCTGTTACTCTG 59 NA Drosophila melanogaster 50 CG13133 FBgn0032181 FBtr0079969 3 1 1 76 2L 10091815 10091833 CGATCCTACAAGCTACCAC 59 10091757 10091775 ATCATCAGTATTCCGTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL13 FBgn0011272 FBtr0079888,FBtr0100164 3 2 2 171 2L 9968212 9968230 GAGAAGAAGTTCAAGGCCT 59 9968434 9968452 TGTAGACAGAACGATCAGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG5850 FBgn0032172 FBtr0110943,FBtr0079890 3 2 2 102 2L 9962390 9962408 AGTGCTACTCAACGTACTG 59 9962048 9962326 GATGAGGAAATTCTGAAGCAG 59 NA Drosophila melanogaster 50 CG4658 FBgn0032170 FBtr0079886,FBtr0079887 1 2 3 88 2L 9957825 9957843 GAAGCTAGCCGAGATTCTC 59 9957892 9957972 GAAAGACTTGTGACACAAAGAC 59 NA Drosophila melanogaster 50 CG31710 FBgn0051710 FBtr0079849 3 1 1 93 2L 9703313 9703331 AAGAGGATCCCGTATACCA 59 9703149 9703167 GACTGGGCTTTATCTCGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32982 FBgn0052982 FBtr0079771,FBtr0110960,FBtr0079772 1 3 3 82 2L 9161941 9161959 ATAATGGCAACGAACTGGA 59 9162005 9162086 CATTGGTTGAACTGAGTGC 59 NA Drosophila melanogaster 50 CG8292 FBgn0032004 FBtr0079632 2 1 1 60 2L 8217796 8217814 GCCACATTACAGACTTGAG 58 8217754 8217775 ATACCCTTATCCGTAAACTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trf FBgn0010287 FBtr0079542 1 1 1 60 2L 8073609 8073627 ATCTTCGTCAACGGAAAGG 59 8073651 8073669 AGTCCATAATGTCCTTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7367 FBgn0031976 FBtr0079547 3 1 1 86 2L 8028026 8028044 CACAGCTCATCAAGTTCGA 59 8027884 8027905 GCGGAAACTCAAAGTTATTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Rab30 FBgn0031882 FBtr0079426,FBtr0079428,FBtr0079427 1 3 3 60 2L 7031918 7031936 AGCTACAAATCTGGGACAC 59 7031876 7031894 TAGTAGCTTTGCGTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sip2 FBgn0031878 FBtr0079358 3 1 5 71 2L 6963745 6963763 CAGTTTCTAATGACCGAGC 58 6963503 6963522 ACTATAGCGCATATCCTTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13773 FBgn0042092 FBtr0079372 1 1 1 60 2L 6907245 6907266 GAGAACTATTGCTAGAGAATGG 58 6907108 6907126 GGACTGCCAAACTTAATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sens-2 FBgn0051632 FBtr0079341 2 1 1 273 2L 6832406 6832424 TGTACTCGTGCATGAAGTG 59 6833112 6833131 CAGTAGTTGCAGGGATAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31910 FBgn0051910 FBtr0079304 2 1 1 60 2L 6745510 6745528 TGAATTGATGTTGGAACCC 57 6745468 6745487 TGATCTGTTATCCGATCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 homer FBgn0025777 FBtr0079307,FBtr0079306,FBtr0110778 1 3 3 101 2L 6721445 6721527 TGCTCTTCAGGAATCAACTG 59 6721363 6721381 CACAGCTGCTCCATATCTC 59 NA Drosophila melanogaster 50 CG9596 FBgn0031832 FBtr0079331,FBtr0079332 1 2 2 60 2L 6560922 6560941 CTATCTGCTGTACGAGAGTG 59 6560881 6560900 TATAGAGTTGAGCATGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9507 FBgn0031808 FBtr0079255 1 1 1 61 2L 6382407 6382425 ATCCGAATCCTACGTAAGC 58 6382450 6382468 CCAAGATTTGGCCAAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14014 FBgn0031718 FBtr0114511 1 1 1 60 2L 5550524 5550543 CAGTTGTATCTGATGAACGG 58 5550483 5550501 CCATTGCACTTGTAGTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cl FBgn0000318 FBtr0079095 1 1 1 137 2L 5520502 5520520 CAAGGACGAGAAAGGAGAG 59 5520694 5521147 AAATCCTTCCAGTATGCCC 59 NA Nonspecific Drosophila melanogaster 50 Sgs1 FBgn0003372 FBtr0077393 3 1 1 60 2L 4937566 4937585 AAAGCTAATTACGACTGGGA 58 4937608 4937626 ATCCGGGTATTATCTCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3294 FBgn0031628 FBtr0077382,FBtr0077381 3 2 2 84 2L 4795558 4795847 TACACAAACGAACGATCTG 57 4795895 4795913 AGAACTCCACGTTTAGTCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG15440 FBgn0031607 FBtr0077454 3 1 1 60 2L 4454130 4454149 CTTCGTCAACTTCATATCCG 58 4454089 4454107 CTTACCGTTTAGCTTGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sr-CIV FBgn0031547 FBtr0077560 3 1 1 174 2L 3523284 3523302 AACCTACCACTTCCTATCG 58 3523062 3523146 GTCGAACTTGTAGGGATGG 59 NA DesignRelaxed Drosophila melanogaster 50 Rbp9 FBgn0010263 FBtr0077636,FBtr0077635 2 2 7 154 2L 2955494 2961223 ATTATCCATCACAACAGCGT 59 2961340 2961358 CTGTTGGTCACATTGTTGG 59 NA Drosophila melanogaster 50 CG8814 FBgn0031478 FBtr0077629 3 1 1 99 2L 2876367 2876385 GGAAAGCTATACTTGCGGA 59 2876818 2876839 GCTTTCTAGGATAGAAGAAAGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG31949 FBgn0051949 FBtr0077757 3 1 1 60 2L 2300481 2300499 CTGAATGAGCAACTCTCCT 58 2300521 2300541 GAACCATTGTCAGTATAAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7261 FBgn0027509 FBtr0077829 1 1 1 131 2L 2150680 2150698 GGTTATTTGCCGATCACAC 59 2150791 2150863 TGGAGGCATACTTGATAAGAG 58 NA Drosophila melanogaster 50 lwr FBgn0010602 FBtr0078081,FBtr0078082 3 2 2 164 2L 541831 541849 CTACACCATCTACTGCCAG 59 541685 541703 AGAGCATTCCAAACAAACG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 1 7 8 80 2L 119224 119297 TATAATGCAGACTGATGTCCTG 59 119165 119184 TTTCCCAACTTCAAGTTTGC 59 NA Drosophila melanogaster 50 CR41509 FBgn0085792 FBtr0114245 1 1 1 80 YHet 327654 327673 AGAATACGAAACTGGAACAG 57 327522 327612 CTTGATCATCCTTTACTGCT 57 NA Nonspecific Drosophila melanogaster 50 stnB FBgn0016975 FBtr0111138,FBtr0111137 3 2 2 81 X 22386913 22387148 ACCATCAAATTTCAACCACC 58 22386851 22386869 GAAGTTCACGATTCTTGGG 58 NA Nonspecific Drosophila melanogaster 50 CG34334 FBgn0085363 FBtr0112536 3 1 1 61 X 22276462 22276480 GCACATTAAGGGATTGACG 58 22276505 22276523 AGTGACCAAATATCTCGGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41476 FBgn0084036 FBtr0111183 1 1 1 249 X 22177018 22177036 CTTGATTCTGCAATCCTCC 58 22169233 22170005 TGTGAGTATCGTGTTTCCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG1529 FBgn0031144 FBtr0114624 1 1 2 118 X 20902536 20902606 TATATGTGAAGGAGGAGCC 57 20902436 20902454 CTTCGACAGATCTACCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Peritrophin-A FBgn0022770 FBtr0077335,FBtr0077336 2 2 2 60 X 20119015 20119033 TAGGTTTACACTGGTTCGC 59 20119056 20119075 AAGTAGTTGGTTAGTCGGAG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG33491 FBgn0053491 FBtr0089603 1 1 1 215 X 20073412 20073516 TGATGGCCATAGTTGAGTG 59 20072823 20072841 TGTAGTCACCAGAGGTCTC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG14200 FBgn0031023 FBtr0074721 2 1 1 278 X 19404311 19405163 AAGAAAGCCGAAGGAATCC 59 19405403 19405423 GAATACGGCTTTATCATTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15056 FBgn0030918 FBtr0074560 1 1 1 79 X 18309563 18309654 CTCGTTCAGCGTAATTAGC 58 18309697 18309715 AGCTAATGCGAGACTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4880 FBgn0030803 FBtr0074342 1 1 1 60 X 16781738 16781756 ACGTGAATACACTCTCCTG 58 16781780 16781798 GATAGCATGCTCTTCACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9723 FBgn0030768 FBtr0074376 1 1 1 68 X 16548217 16548235 GATTCTGATCACCTACCGC 59 16548100 16548185 ATCAGGAACGAGATCAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pp2B-14D FBgn0011826 FBtr0074294 2 1 1 67 X 16452995 16453013 CGATGATCGATATTGAGGC 57 16452946 16452964 CATCAGGTCGTAGAACTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 disco FBgn0000459 FBtr0100384,FBtr0074250 1 2 2 63 X 16105838 16105856 CTCCTCTCCGAAATGTACC 59 16105793 16105811 GATGGTGGTTGTATTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nipsnap FBgn0030724 FBtr0074258,FBtr0074257,FBtr0074259 3 3 3 278 X 15965372 15965390 TCTTAGCTTGATGCAGGAG 59 15964886 15965070 TGCAGAGATTTGTAACACC 57 NA DesignRelaxed Drosophila melanogaster 50 dpr18 FBgn0030723 FBtr0074206 2 1 1 81 X 15959723 15960410 CAAGTTCTATACACGACATCC 58 15960453 15960471 GTAATGAACGATTCTCGCC 58 NA Drosophila melanogaster 50 CG6227 FBgn0030631 FBtr0074011 3 1 1 131 X 15241247 15241267 CAAGAACTTCTATGTCGAGGT 59 15241360 15241519 TGTGCCCAAGTCTTAATGG 59 NA Drosophila melanogaster 50 RpL37a FBgn0030616 FBtr0074027 1 1 1 234 X 15033055 15033073 CTACCACATCCAGAAGTCC 59 15032774 15032793 GGATATACATCTTGGGACAC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12481 FBgn0030542 FBtr0100281 3 1 1 81 X 14081510 14081530 TATTACATCAAACCGGGTCAG 59 14081573 14081591 CGTCATCCTGATCGTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32654 FBgn0052654 FBtr0113445,FBtr0113444 3 2 2 61 X 12498245 12498263 CGATAGCTCTGCTACAGAG 59 12498288 12498366 CAAGTAGAATAAGCCTGGG 57 NA DesignRelaxed Drosophila melanogaster 50 Ant2 FBgn0025111 FBtr0073426 3 1 2 140 X 10674342 10674361 ATAGTCGATTGCTTCATTCG 58 10674145 10674241 GAGGAATACCGATTTGTACAC 58 NA Drosophila melanogaster 50 CG32699 FBgn0052699 FBtr0110850,FBtr0071369 2 2 2 130 X 9468297 9468392 ATGGACCTGGAGTATTACG 58 9468185 9468204 ATTGTTGGCATACAGATTGG 58 NA Drosophila melanogaster 50 CG12106 FBgn0030100 FBtr0071306 2 1 1 60 X 9088669 9088687 GACCATCGTTGAGTTTGTC 58 9088710 9088729 CTTGAGACGATTGATTAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mei-P26 FBgn0026206 FBtr0071303 3 1 1 93 X 9064243 9064342 ATCGCTATACGAGACAACG 59 9064398 9064417 CAATGCGATAGAGGAATGTG 58 NA Drosophila melanogaster 50 Ost48 FBgn0014868 FBtr0071344 2 1 1 60 X 9052219 9052237 AAGCTCACCTACAAACTGG 59 9052177 9052198 GATATTCACCGTATTTGGACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slpr FBgn0030018 FBtr0071184 1 1 1 93 X 8069401 8069419 AGATGTACAACACGCAGAG 59 8069260 8069346 TCGGAGAATTTGGAATAGGTG 59 NA Drosophila melanogaster 50 dpr14 FBgn0029974 FBtr0071134 2 1 1 101 X 7800355 7800373 GTCATTTCGAAGATTCCGC 59 7800205 7800290 CGTCTTGACACTGATTCCT 59 NA Drosophila melanogaster 50 CG15896 FBgn0029858 FBtr0070898 3 1 1 81 X 6186684 6186768 CTTCTTGACCAGCAATCTG 58 6186813 6186831 GAAGAAGTCTGTCTCCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12688 FBgn0029707 FBtr0070653 3 1 1 64 X 4275989 4277077 AAGAAGATCCAAGCATCCC 59 4277105 4277123 GGAGTGTCCTCTAAGTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG15375 FBgn0029694 FBtr0070637 1 1 1 281 X 3995742 3995836 ATTTCGTCAAGGTCATGAG 57 3996282 3996300 ATATAAGGCGGTACCTTGG 58 NA DesignNoJunction Drosophila melanogaster 50 ng3 FBgn0010295 FBtr0070539 3 1 1 60 X 3135855 3135875 GAGGACGTATCACTATACACG 59 3135815 3135836 CCTATAGATATGTCGTATCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4194 FBgn0025627 FBtr0070328 1 1 1 60 X 1962708 1962727 GAATCTTGGGAATCCTCAGG 59 1962750 1962768 CAATAGCTGTTTGTGGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Appl FBgn0000108 FBtr0070109 1 1 1 81 X 466093 466190 TAAGTCAGAAACGCCTTGAG 59 466234 466252 TACTTCTCCTCGAGATCGG 59 NA Drosophila melanogaster 50 l(1)sc FBgn0002561 FBtr0070074 1 1 1 60 X 304298 304317 CTCGTCACATCTACAATTCC 58 304339 304358 TAATCGTTATAGCTGCTGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40719 FBgn0085511 FBtr0113924 2 1 1 278 U 9970997 9971015 TAGCCAGAAGAATAAGCCG 59 9970737 9970755 TTGGACACAATTCTAAGGC 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG40162 FBgn0058162 FBtr0113815 2 1 1 70 U 588244 592701 TAATCTCATTCGAGACGGAG 58 588193 588211 CCAAATCGTTGTTAACGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG40204 FBgn0058204 FBtr0113834 3 1 1 73 U 497479 497500 TGAACTATCACAAGATCCTGTC 59 497533 497552 TACTTACCTTCACAACGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34036 FBgn0054036 FBtr0100091 1 1 1 184 4 352112 352130 TGGTTATGCTTCTCAAAGC 58 350046 350907 CACTCGTATAGCTTGATCAG 57 NA InUTR Drosophila melanogaster 50 pasha FBgn0039861 FBtr0085820 1 1 1 65 3R 27446120 27446138 TAACGGGCAACAATAAGGA 58 27446167 27446241 AAACAGACAGATCGCTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34298 FBgn0085327 FBtr0112494 2 1 1 61 3R 25825814 25825833 TAGATAATGTTCCCAGCAGC 59 25825857 25825936 CATGTTGCTCACATTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trp FBgn0003861 FBtr0085513 2 1 1 103 3R 25743589 25743609 TGGATCTTTGGAACATAGTGG 59 25743449 25743524 GAACCAGAGATCACGATGG 59 NA Drosophila melanogaster 50 CG7568 FBgn0039673 FBtr0113306 1 1 1 64 3R 25426419 25426438 CACTTCGATCTACTTGACCT 58 25426323 25426341 AATAGGATCCTGTCTGCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG31445 FBgn0051445 FBtr0085401 3 1 1 99 3R 25067428 25067446 ACGAGACCTTATTCCTTGG 58 25067289 25067367 CATGTAGCGTTTAAATGACCC 59 NA Drosophila melanogaster 50 CG5639 FBgn0039527 FBtr0085202 2 1 1 98 3R 23416040 23416059 ATGATTAGCAGGTCGTATGC 59 23415898 23415982 GTTGTGGTCATTCTTAAATCCG 59 NA Drosophila melanogaster 50 CG6599 FBgn0039513 FBtr0085166 3 1 1 80 3R 23187089 23187170 AGTCTTCAGATAAAGATGGCC 59 23187211 23187230 CTATCAAGGTGTCAATGCAC 58 NA Drosophila melanogaster 50 CG34293 FBgn0085322 FBtr0112489 3 1 1 83 3R 22991078 22991160 CTGATCAATGGATTCTTTCTGG 59 22991016 22991035 TAGGGTTTGCATGTAGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5909 FBgn0039495 FBtr0085114 2 1 1 90 3R 22987263 22987281 TACGGTCGGAATATACCAC 58 22987335 22987477 AACAAAGATGGAAGTCCCT 58 NA Drosophila melanogaster 50 CG34292 FBgn0085321 FBtr0112488 1 1 1 60 3R 22888143 22888164 TGATATCGAGCCTTATAGACTG 58 22888185 22888203 AAACCGACCACCATTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5111 FBgn0039343 FBtr0084880 1 1 1 60 3R 21333133 21333153 GTCAAGATGAATGACACTGAG 58 21333175 21333193 CATCCGATTCCTCATAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17462 FBgn0039251 FBtr0084718 1 1 1 60 3R 20751839 20751858 TTCAACGAGGTCTACAACTC 59 20751881 20751899 TGATCACCATTAGCGTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycB3 FBgn0015625 FBtr0084728 2 1 1 61 3R 20695892 20695910 TGGATGCTAAGAAACAGGA 58 20695849 20695867 CGTAGTCATCTTACTGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6995 FBgn0039229 FBtr0100424,FBtr0084699,FBtr0084700 2 3 3 153 3R 20647310 20647329 TTTGCACAAGAACAACACAG 59 20647445 20647531 ATAACGCTTGTTACCGAGG 59 NA Drosophila melanogaster 50 CG13623 FBgn0039205 FBtr0084679 3 1 1 186 3R 20355899 20355980 GAAATCTAATCCTAATGCGGC 59 20355733 20355751 AGCTGCTTATCCAAATCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6182 FBgn0039158 FBtr0084551 2 1 1 82 3R 19988339 19988358 TAAGGACATAAGGTCCTCGA 59 19988403 19988477 CGTCAAGATCCTTTACCGT 59 NA Drosophila melanogaster 50 CG5463 FBgn0039153 FBtr0084584 3 1 1 81 3R 19954273 19954291 TGATAAATCTCCAGGCAGC 59 19954151 19954229 AGTTCGATTAGCTCACTGAC 59 NA Drosophila melanogaster 50 CG33108 FBgn0053108 FBtr0084504 1 1 1 73 3R 19821935 19821953 ATGTAGGTCCTTTGGACTG 58 19821990 19822840 ATCGTAGGGCACTAGTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 Tbp-1 FBgn0028684 FBtr0084452 3 1 1 204 3R 19579305 19579323 GACCTACAGAGCAGTACTC 58 19579548 19579566 AAGGTGGACTTTGTCTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31414 FBgn0051414 FBtr0113405 3 1 1 90 3R 19531434 19531507 CAGGATCATGTCTATAGATCCT 58 19531558 19531576 CCATATCAAAGTCGGAACC 57 NA Drosophila melanogaster 50 CG6733 FBgn0039052 FBtr0084352 2 1 1 85 3R 18924528 18924546 ATATAGGACCCACCAAGCT 59 18924594 18924670 ATGAACCTTCAATCCAAGCT 59 NA Drosophila melanogaster 50 CG17622 FBgn0038998 FBtr0113266 3 1 1 211 3R 18484174 18484452 CTGCTCCTCAGAATTCCAG 59 18484627 18484645 GATTGATGCAGCAATTTGG 57 NA DesignRelaxed Drosophila melanogaster 50 CG7046 FBgn0038979 FBtr0084259 3 1 1 87 3R 18319251 18319271 TATCTATGAAGCTCCGTTGTC 59 18319320 18319338 CATTGCTTCATCCTTGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6569 FBgn0038909 FBtr0113263 3 1 3 101 3R 17693194 17693212 ATGACCTCTCCAAACAGAC 58 17693033 17693129 CATTAGTCTCTGGTCCCTG 58 NA Drosophila melanogaster 50 rtet FBgn0028468 FBtr0084009 3 1 1 81 3R 16935846 16935865 CGTCACATTTCTGATGTACC 58 16935909 16935984 CATGATTACACCCGTTGTC 58 NA Drosophila melanogaster 50 Dhc93AB FBgn0013812 FBtr0084046 3 1 1 86 3R 16861279 16861382 GGGAACAGTGGTTATTCGA 59 16861211 16861229 TAAAGGCGATGTTCACCTC 59 NA Drosophila melanogaster 50 cdc2c FBgn0004107 FBtr0083921,FBtr0083922 3 2 2 89 3R 16562387 16562464 CTGAAATGATTATGCGCCG 59 16562517 16562535 CATCAGGTGTGCTTAAGGT 59 NA Drosophila melanogaster 50 Surf6 FBgn0038746 FBtr0083854 3 1 1 61 3R 15730387 15730405 TTCTATCAGCGAGTCTTGG 58 15730290 15730363 TCTTCTTGTTTGGAGTAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34284 FBgn0085313 FBtr0112480 3 1 1 61 3R 14728338 14728356 ATTGGCTTTATCCCATTGC 58 14728295 14728313 TCTTGTGAAGATCGACACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7431 FBgn0038542 FBtr0083532 1 1 1 85 3R 13580957 13580975 CATTTGGATCTCCCTGGAC 59 13580810 13580908 TCACGGCCAAATATCTGTC 59 NA Drosophila melanogaster 50 CG16941 FBgn0038464 FBtr0083374 1 1 1 131 3R 12825467 12825485 AATGGACAGATGATAGCCG 59 12825297 12825374 GTCTTTGAAGAACATTCCCTC 58 NA Drosophila melanogaster 50 CG5205 FBgn0038344 FBtr0083147 1 1 1 81 3R 11314695 11314714 AATCTGAATGCGGAAATTGG 59 11314755 11314836 CAAACAAGTACGTGTAACTGAG 59 NA Drosophila melanogaster 50 CG31344 FBgn0051344 FBtr0083136 2 1 1 60 3R 11050488 11050506 ATTTGGAGCTACCTTCGTG 59 11050092 11050465 CTAAAGTAGCTCTGACCACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3563 FBgn0038259 FBtr0082989,FBtr0113234,FBtr0082988 1 3 3 125 3R 10616865 10616883 GTTACAGTAGTGCCTCGAC 59 10616970 10619180 GATAAGTGGCTTGTATCTTGC 59 NA Drosophila melanogaster 50 Cys FBgn0004629 FBtr0082980 3 1 1 84 3R 10395034 10395053 GTAGCTGGAAGTCTTAACAC 57 10394969 10394987 GCTGAGTCCAGATCTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3321 FBgn0038224 FBtr0082932,FBtr0082931 3 2 2 180 3R 10152756 10152776 ACCGTACCAATACAACTATCG 59 10153043 10153061 ATCTGCCGAACTTGATCAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Ipp FBgn0016672 FBtr0082865 2 1 1 231 3R 9784907 9784925 CAATTTCACCAACCAACTG 57 9785120 9785422 GTCAATTGGATCGATCCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14368 FBgn0038162 FBtr0082859 3 1 1 170 3R 9451183 9451201 TCAAGTCTTGTGTCTAGGC 58 9451031 9451049 AACAACATCCTTCTCGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14369 FBgn0038159 FBtr0082789 3 1 1 139 3R 9418227 9418245 CATTGGAGCAGGAAATTGG 59 9418106 9418125 ATATGCCCAAGAATAGCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yellow-e3 FBgn0038150 FBtr0082759 2 1 1 172 3R 9229859 9229877 GGGTTATGGTCTAATCGTG 57 9229640 9229723 GAAAGTACAGAAAGCGGTC 58 NA DesignNoJunction Drosophila melanogaster 50 mthl12 FBgn0045442 FBtr0082746 1 1 1 91 3R 9180805 9180825 AGTAAAGAAGGGAGTCAAGAG 58 9180875 9180947 GCACGAATTGTATGTAAGTCTG 59 NA Drosophila melanogaster 50 CG8774 FBgn0038136 FBtr0082740 3 1 2 89 3R 9124917 9124993 AAGATACGACGGATTACCG 58 9125046 9125064 TGAAGTTTCCTGTCTCCAG 58 NA Drosophila melanogaster 50 CG14380 FBgn0038124 FBtr0082733 3 1 1 82 3R 9014573 9014591 AATTATTCCAGGACCCGTC 59 9014700 9014719 GTAGAAGCGCAGTTAAACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6783 FBgn0037913 FBtr0100323 2 1 3 192 3R 7386919 7390171 GCTGATCACCCTAATTCCC 59 7386745 7386763 TAGGTGATGCAGATCTCGA 59 NA Nonspecific, InUTR Drosophila melanogaster 50 Ugt35a FBgn0026315 FBtr0082374 2 1 1 96 3R 6998143 6998164 CAATGTCACCGTAATCAATACC 59 6998001 6998086 AAATGCCGCCATTATTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14691 FBgn0037829 FBtr0082314,FBtr0082313 1 2 2 118 3R 6579330 6579348 ATCATGACCTTTGGGAGAC 58 6579166 6579249 AGAAAGGCAATTGACATCAG 58 NA Drosophila melanogaster 50 CG6208 FBgn0037789 FBtr0082195 1 1 1 60 3R 5946455 5946476 CAAGAAGACCTTCAAGAAATGG 59 5946416 5946435 TTGTAATGTGTTCACCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9448 FBgn0037734 FBtr0082091 3 1 1 106 3R 5533331 5533414 GGGCATGTGTTCTTTACTC 58 5533243 5533261 AGTAGTGTACTCCAGTCCT 58 NA Drosophila melanogaster 50 RpL34b FBgn0037686 FBtr0082049 1 1 2 133 3R 5226743 5226934 AGTTTCGTCTCTTTGAGCA 59 5226565 5226583 TACTGGTAAACCAGACGAC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Or85c FBgn0037591 FBtr0081899 1 1 1 87 3R 4337630 4337648 TATAGCTCGACCTCAGAGG 59 4337501 4337579 TACTTGAAGAAGGTCCGTC 58 NA Drosophila melanogaster 50 CG10068 FBgn0037473 FBtr0081611 1 1 1 60 3R 2952746 2952764 CATGGCCTTCAATCTAGTG 57 2952704 2952724 CACCACCAAATTGTAGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1137 FBgn0037454 FBtr0081705 1 1 1 116 3R 2385095 2385113 CTGATAAGGAGGCCTACCT 59 2384938 2384956 TATTGGCCTTTACCAGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33324 FBgn0053324 FBtr0081727 3 1 1 167 3R 2272024 2272183 GTTATCGCCAGTGTATCAC 57 2272314 2272332 GTGTTGCAACTAATCGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Xe7 FBgn0010772 FBtr0078729,FBtr0078728 2 2 2 96 3R 1493795 1493813 GTGATCCGTACCGAAAGAG 59 1493658 1493737 TCGAACTGAACATATCCTTCG 59 NA Drosophila melanogaster 50 CG31551 FBgn0051551 FBtr0078706 3 1 1 60 3R 1456546 1456564 GCTAAGATCTTCAAAGGCG 58 1456588 1456606 ACTGGAACTGATTGGTCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34357 FBgn0085386 FBtr0112568,FBtr0112567 2 2 2 138 3R 360240 363538 TACGTGATGTGGACTTAAGC 59 360121 360140 GTGCCAATGTAGATAGTGGA 59 NA Drosophila melanogaster 50 CG31523 FBgn0051523 FBtr0078938,FBtr0078935,FBtr0078936,FBtr0078937 2 4 4 92 3R 293416 293434 TTCTACTACATGATCGCCG 58 293283 293361 CACGAATTGAACCATTTGGA 59 NA Drosophila melanogaster 50 CG40057 FBgn0058057 FBtr0111159 3 1 2 125 3L 24518909 24518930 CGAATGCAATGGATATGATGTC 59 24518394 24518823 GATCTATGAGTGTGGCGAC 59 NA Drosophila melanogaster 50 CG41454 FBgn0084017 FBtr0111173 2 1 1 145 3L 23131361 23132879 AACATTCGTTGACTTTCCTC 58 23132987 23133005 AACAGCGACGGATATAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11437 FBgn0037165 FBtr0078505 1 1 1 61 3L 22462719 22462737 CTTAACAGATGTGGCAGCT 59 22462762 22462780 ATACTGTTGCAAAGAAGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7130 FBgn0037151 FBtr0078484 2 1 1 119 3L 22068662 22068680 GACGTCAAGAAGGGATACC 59 22068561 22068580 CTTATCAAAGAGCACTTCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 skd FBgn0003415 FBtr0078328,FBtr0112830,FBtr0078329 2 3 3 80 3L 20989472 20989492 TTCTAACATTCGAGGAAGAGG 59 20989353 20989430 TGTCCATATGAGTGTCCCA 59 NA Drosophila melanogaster 50 fbl FBgn0011205 FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188,FBtr0078190 3 5 5 105 3L 20383913 20383991 GAAGATCGATAGGGTCGTC 59 20384060 20384078 CTTCATTGTGCCATTGGAC 59 NA Nonspecific Drosophila melanogaster 50 CG7323 FBgn0036943 FBtr0074863 3 1 1 87 3L 20147927 20148008 TGACTGATTTGTTCCTAGCC 59 20147859 20147877 ACATTGGAGAACAGTCGAG 59 NA Drosophila melanogaster 50 CG9231 FBgn0036887 FBtr0074972 1 1 1 100 3L 19578929 19578947 AGAGACGATCAAGAACCAC 59 19578783 19578868 GACTAACGAAATTGGGAATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14074 FBgn0036818 FBtr0075061 2 1 1 60 3L 18860005 18860024 TGGTCAATTACTAAACCCGA 58 18860047 18860065 GGAGGAGTGTTCCTTAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cad74A FBgn0036715 FBtr0075240,FBtr0075239 3 2 2 95 3L 17363251 17363332 GAATGTCACAGAGAATGCTG 58 17363175 17363194 TAAGTAATGGTTCCGGATGG 59 NA Drosophila melanogaster 50 rogdi FBgn0036697 FBtr0075283,FBtr0075282 3 2 2 86 3L 17045161 17045179 AGTTCATACTCACCGTGTC 59 17045228 17045833 TAAAGCTAATGTCAGCCTGG 59 NA Drosophila melanogaster 50 CG4933 FBgn0036615 FBtr0075381 1 1 1 95 3L 16345929 16345947 GATCTTTGCTATTCGCTGC 59 16346004 16346079 TATAAGGACCTCATTTGAGCC 59 NA Drosophila melanogaster 50 MED10 FBgn0036581 FBtr0075458 2 1 1 60 3L 16225539 16225558 TCTATGTGCCATTTGAAGTG 58 16225580 16225599 TACAGCTGAGGATTCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS31 FBgn0036557 FBtr0075519 2 1 1 140 3L 15998824 15998842 CAGAGTCTGAGCTATTGGC 59 15998945 15999030 TGCCCACGATAATATCACTC 59 NA Drosophila melanogaster 50 shd FBgn0003388 FBtr0075675,FBtr0075676 2 2 2 91 3L 14613773 14613793 TGAATATTCTGGAGCTCAAGG 59 14613845 14613921 GTTGGCTAACGTTTCTATGC 59 NA Drosophila melanogaster 50 CG3868 FBgn0036422 FBtr0075729 1 1 1 110 3L 14394395 14394413 TAATGCTGATCTGGTTCCC 59 14394007 14394025 ATCTTGGGATCAAACTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG14109 FBgn0036364 FBtr0075850 1 1 1 73 3L 13435226 13435244 AAGAGAATCCATCGACCTC 58 13435280 13435299 CGTGAACATGTTAAGCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10222 FBgn0036356 FBtr0075861 1 1 1 60 3L 13404941 13404962 CAAGTTACACTTTAACGTGGAC 59 13404902 13404920 GTCCAGCAGATACTTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14113 FBgn0040814 FBtr0075837 2 1 1 92 3L 13322331 13322401 AAGAGGTATACACGGAGGA 58 13322457 13322475 ATCTGAGTGCATACTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18179 FBgn0036023 FBtr0076388 2 1 1 68 3L 9632671 9632689 CACTATGGATCCAACTGGG 59 9632721 9632739 GCTGATAAAGTTGTCACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3306 FBgn0036016 FBtr0076380 1 1 1 60 3L 9594953 9594974 TAACTTCAATGATAGTCTGCCC 59 9594992 9595013 GAAACTCATCGTGTAATGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 path FBgn0036007 FBtr0076428,FBtr0076427 3 2 2 111 3L 9490135 9490223 CCAACAACCGATAATGAAACTC 59 9490045 9490065 AGAAGATTCCCATGATGAGAC 59 NA Drosophila melanogaster 50 CG6638 FBgn0035911 FBtr0076651 1 1 1 240 3L 8568815 8568889 TAATTTCAAGGACATGCGC 58 8568491 8568509 CTTGGGAAGGTACTTCTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG13676 FBgn0035844 FBtr0076732 1 1 1 80 3L 8138574 8138592 ACGAGATCCACTTCAAGTG 59 8138227 8138531 AATGGTGATAGATCTGGCAC 59 NA Drosophila melanogaster 50 eco FBgn0035766 FBtr0100278,FBtr0076882 1 2 2 60 3L 7330330 7330350 TTCTCCGATCTTAGTGATGTC 59 7330290 7330308 GTATGATAGGCTCCACCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 melt FBgn0023001 FBtr0100141,FBtr0076917 3 2 2 90 3L 7135158 7135240 TTTCCTCAGGTTAAGGACC 58 7135294 7135312 ACTTGTCTGTCTTGGAGAC 58 NA Drosophila melanogaster 50 Prat2 FBgn0041194 FBtr0076946,FBtr0076945 2 2 2 60 3L 6905424 6905442 CAATATCCCTGCTACATGG 57 6905382 6905401 ATTTGTTGGCTATTAGCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11357 FBgn0035558 FBtr0073310,FBtr0113143,FBtr0113142 1 3 3 147 3L 4551933 4552115 CATATCGTTCCAAATGGCG 59 4552224 4552244 TCTACCCAGAAGTATTTGGAC 58 NA Drosophila melanogaster 50 CG7447 FBgn0035539 FBtr0073291,FBtr0073292 1 2 2 101 3L 4402064 4402082 ACGTCATCGATCACAAGAC 59 4402146 4402233 AGCAAATAGGTTTCATGCAC 59 NA Drosophila melanogaster 50 CG32297 FBgn0052297 FBtr0072939 2 1 1 189 3L 2653477 2653495 CAATTCCTCCTCAGACGAC 59 2653646 2653726 TACATATTTCTGCGAGGACTC 59 NA Drosophila melanogaster 50 CG13907 FBgn0035173 FBtr0072593 3 1 1 60 3L 879207 879225 CCATGTTGGATGTTAGCCT 59 879165 879185 ATATTCGAGACTCCGATAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pk61C FBgn0020386 FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466 2 8 8 87 3L 142804 142822 ATATCGCGACTGCTTAGTG 59 142873 142954 GGTCGAAAGAGTTCTTTGC 59 NA Drosophila melanogaster 50 Cyp6a15Psi FBgn0033303 FBtr0088689 2 1 1 258 2R 4457267 4457399 TTGTCTGCTCATCGTTGAG 59 4457621 4457639 GTTAGGTCTGAATCACCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33418 FBgn0053418 FBtr0086410 1 1 1 62 2R 15629737 15629755 AATACATCGGTTCTCGTCC 59 15629693 15629711 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3492 FBgn0035007 FBtr0072294 3 1 1 69 2R 20361047 20361065 GAACTTGATGGACCAATGC 59 20361098 20361116 GATGTCCAGGTAGATCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nvy FBgn0005636 FBtr0072267 3 1 1 210 2R 20177065 20177083 TTCTTCATGGAGATGAGCC 59 20177314 20177461 AAACCTGATGGTGACTATCC 59 NA DesignNoJunction Drosophila melanogaster 50 Gr59e FBgn0041233 FBtr0072115 1 1 1 264 2R 19428883 19428968 AGAAATGTAACCTTTGCCAG 58 19428578 19428597 CAAACGTAAACCCAATTGGA 58 NA DesignNoJunction Drosophila melanogaster 50 yellow-d2 FBgn0034856 FBtr0072012 2 1 1 60 2R 19268920 19268938 GATGGACTATACGATCCGG 58 19268962 19269034 CATGCTTGTAGTAGACGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3700 FBgn0034796 FBtr0071904 1 1 1 157 2R 18782509 18782590 GAGACGGATGAATCGAAGG 59 18782710 18782729 GTATCATATCCAGGGTGCAC 59 NA Drosophila melanogaster 50 CG11298 FBgn0034721 FBtr0071819 2 1 1 87 2R 18236104 18236122 CAAAGTTGGCTAGACTCCC 59 18236173 18236191 TCAGACGTTTCGAGATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6758 FBgn0034704 FBtr0071767 1 1 1 80 2R 18064198 18064218 ATTTAGCTCTAAGGTGTCGTG 59 18064260 18064335 CCATTCGAAAGGGATCCTC 59 NA Drosophila melanogaster 50 CG30403 FBgn0050403 FBtr0114523 1 1 1 64 2R 17598169 17598638 GTTCTTGGACACGAATGAG 58 17598123 17598141 TAAGTCGAATCTGTAGGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11192 FBgn0034507 FBtr0086296 3 1 1 65 2R 16241851 16241869 ATATGGCATCGTTTCCTGG 59 16241804 16241822 ACATTGGTGTACACTCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15905 FBgn0034462 FBtr0086491 3 1 1 69 2R 15534908 15534926 GTTAGCATCAAGGATGTGG 58 15534769 15534876 CATCGTTATACGTCTCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15080 FBgn0034391 FBtr0086613 2 1 1 140 2R 14680628 14680646 TAACTTCGAGAGTGAACCG 59 14680750 14680820 TTCTCTGGCTTCAGATTGG 59 NA Drosophila melanogaster 50 CG18609 FBgn0034382 FBtr0086643 3 1 1 105 2R 14630886 14630907 GGCAAGATCTTTATGAGAAACC 59 14630740 14630822 AAACCATTCCGAAGTAGAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 nopo FBgn0034314 FBtr0086750 3 1 1 203 2R 14068894 14068912 CTGATCCACATGTCCTAGC 59 14069139 14069212 AAGCTTGTAGCTTCTCCTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG30456 FBgn0050456 FBtr0086980 1 1 1 112 2R 12993701 12993782 ACTTTACTAGTATCCGCCTG 58 12993857 12993875 ATTAATGAACTGCGTGAGC 58 NA Drosophila melanogaster 50 Sod2 FBgn0010213 FBtr0087078 3 1 1 124 2R 12661005 12661023 CAACAATCTAAATGCCGCC 59 12660899 12660917 AGATGGTGTGGTTGATGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Picot FBgn0024315 FBtr0087115,FBtr0087114 3 2 2 84 2R 12544687 12544777 ATTCCTATTGATGACTCTCAGG 59 12544624 12544642 AGCCATAGAAGAAGGACGA 59 NA Drosophila melanogaster 50 Lis-1 FBgn0015754 FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240 1 6 6 63 2R 12070571 12070592 GCTCAAATGATCAGACAATACG 59 12070615 12070701 CGTAATTCAACCTTGCAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG8079 FBgn0034002 FBtr0087367,FBtr0087368 1 2 2 84 2R 11109856 11109874 CTAGCAACGAGGATAGCAG 59 11109921 11110011 TTAGCAATGTCTTGAAAGCG 59 NA Drosophila melanogaster 50 SMC2 FBgn0027783 FBtr0087461 1 1 1 81 2R 10739569 10739587 AAACAATCCCAACTTCCTG 57 10739444 10739524 TACCATTGACAGAACCTCC 58 NA Drosophila melanogaster 50 CG12863 FBgn0033948 FBtr0087500 2 1 1 212 2R 10508295 10508364 AGCAAGGTTATATGCATGG 57 10508046 10508064 TACAATCACCAGTCGATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG33469 FBgn0053469 FBtr0087504 1 1 1 60 2R 10493401 10493422 GGATTTCATAAAGTCGTCAGAG 58 10493362 10493380 GATTTCTGCTTGTGAACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 L FBgn0001332 FBtr0087492 2 1 1 121 2R 10383835 10383919 TGAAGCTGAAGATGCTCTG 59 10384004 10384022 TGTTTGCTATCTCGATGGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 phyl FBgn0013725 FBtr0087516 2 1 1 280 2R 10316247 10319428 GAAATTCAAGTTTCAGCCC 57 10315985 10316003 TCGAATAGACTATGGGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pea FBgn0086895 FBtr0087518 2 1 1 60 2R 10043794 10043813 TTATAATGTCCGTCGCTCTG 59 10043834 10043854 CTGAGCATCGAAACAATAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13331 FBgn0033850 FBtr0087672 2 1 2 277 2R 9409608 9409821 AGAAGACCAGACTGAGAGG 59 9410061 9410080 GTGTTCCATGTTATAGGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG8632 FBgn0033762 FBtr0087845,FBtr0087844 1 2 2 125 2R 8542589 8542659 GGTTCGGTATAAGGCTGAG 59 8542808 8542826 CTCTCCAGATCCTCAACCT 59 NA Drosophila melanogaster 50 Cpr49Af FBgn0033729 FBtr0087921 3 1 1 60 2R 8293715 8293733 GATGGAGTCTTGAAGTCCG 59 8293757 8293775 AGTACTTTCCATTGACCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33145 FBgn0053145 FBtr0088047 3 1 2 104 2R 7869406 7869424 AACCTGACGCTTAAGTCTG 59 7869253 7869339 CGTGGTAATGAAGGTATCGT 59 NA Drosophila melanogaster 50 CG30034 FBgn0050034 FBtr0088097 3 1 1 196 2R 7405813 7405831 GCTGAAAGCTCAATAAGGA 57 7404231 7404249 GTAATGATCTTGGTCAGGC 57 NA DesignNoJunction Drosophila melanogaster 50 Tsp47F FBgn0033629 FBtr0088151,FBtr0088152 1 2 2 110 2R 7265620 7265638 GGGCCTGATCATATTCCTG 59 7265469 7265487 TCCACAATGAAGATGACGG 59 NA DesignNoJunction Drosophila melanogaster 50 TpnC47D FBgn0010423 FBtr0088184 2 1 1 238 2R 7162556 7162730 ACATTGACGAAGACCTGAC 59 7162278 7162296 CTCTACGATGAACTTGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG7712 FBgn0033570 FBtr0088238 3 1 1 149 2R 6785087 6785182 GATTCCCTACATCGTCATGG 59 6784903 6784921 TCCTTAAGCTCCATTTGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7861 FBgn0033055 FBtr0085974,FBtr0085973 3 2 2 61 2R 1931049 1931067 CCTTAACCAACCTGAACCT 59 1931141 1931159 AGTGATTTGGGATGACGTG 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)NC136 FBgn0033029 FBtr0086062 2 1 1 82 2R 1548366 1548384 AATGTTCAAGGCCAATCTG 58 1548243 1548321 TCCAGGAGTGATGTATTGTG 59 NA Drosophila melanogaster 50 Stlk FBgn0046692 FBtr0111111 1 1 2 171 2R 448287 450361 AAATCAAGGTTCCCTATCCC 59 450494 450513 TTGCTTAAGAAACGAGTGTG 58 NA Drosophila melanogaster 50 His4:CG33873 FBgn0053873 FBtr0091877 1 1 1 60 2L 21524501 21524519 GAACGTAATTCGTGATGCC 59 21524459 21524477 GGCTGTAACTGTCTTCCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 La FBgn0011638 FBtr0081374,FBtr0081373 2 2 2 60 2L 20349264 20349285 GAGAAGATCGTTTATAAGGAGC 58 20349225 20349243 CCTTAAGGTAGTCCACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ref(2)P FBgn0003231 FBtr0081253,FBtr0100289 3 2 2 115 2L 19544997 19545015 ATACGGTGAGTACATCGAC 58 19545094 19545167 GATGCTTTCATCAGTGTGG 58 NA Drosophila melanogaster 50 CG10343 FBgn0032703 FBtr0081098 2 1 1 109 2L 18703828 18703918 ATAGGAATCTACTGCCAGC 58 18703991 18704009 CTTAAGGCATTCGAACAGG 58 NA Drosophila melanogaster 50 CG10336 FBgn0032698 FBtr0081095,FBtr0081094 3 2 2 61 2L 18689947 18689965 ATAGTGGAGCCTAAGAAGC 58 18689990 18690008 AGTGTTTCCACAGTGAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12288 FBgn0032620 FBtr0080957 1 1 1 75 2L 16901221 16901298 TTGGCAGCCTAAAGTACTC 59 16901164 16901182 ATGTAGTCTATTTCGCCGC 59 NA DesignNoJunction Drosophila melanogaster 50 l(2)35Di FBgn0001989 FBtr0080772 2 1 2 61 2L 15750555 15750575 CCTACTACTTCAAGTACAACC 57 15750514 15750535 GTAATAGCCAACTTGAATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15278 FBgn0032554 FBtr0080683 3 1 1 179 2L 14875647 14875667 GTTCTCTTGTCGAACTTTGTG 59 14875419 14875506 AAGAATCCACTGACTGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 Rab14 FBgn0015791 FBtr0080627,FBtr0080628,FBtr0080626 3 3 3 269 2L 14357451 14357535 AAATTCATGGCCAATTGTCC 59 14357819 14357839 GTTGCCAATGAGAAAGATCAC 59 NA DesignNoJunction Drosophila melanogaster 50 wb FBgn0004002 FBtr0080620,FBtr0080619 1 2 2 84 2L 14321170 14321188 CTGATAGGAAGAGCAGCTC 59 14321236 14321318 CTCGACAGTTCTGACAGAC 59 NA Drosophila melanogaster 50 CG9395 FBgn0032506 FBtr0080475 3 1 1 90 2L 13351988 13352006 TACAAGTATCTGGCACTGG 58 13351826 13351937 GCTGATTAAGTGATCCAATGAG 59 NA Drosophila melanogaster 50 CG9395 FBgn0032506 FBtr0080475 1 1 1 84 2L 13351826 13351937 CTCATTGGATCACTTAATCAGC 59 13351763 13351784 CAAACTGAAGATAGTAGAAGGC 58 NA Drosophila melanogaster 50 CG6043 FBgn0032497 FBtr0089911,FBtr0089910,FBtr0114471,FBtr0113039,FBtr0113040 2 5 5 142 2L 13276278 13276382 GCAACAACGATATGATGCC 59 13276488 13276506 TTTCAGGTGTTGTCATTGC 58 NA Drosophila melanogaster 50 CG5287 FBgn0032477 FBtr0080436 3 1 1 81 2L 13180029 13180049 TAAACTATAACTCCACGACGG 59 13180089 13180170 TACAAGGCACCTATATTCAAGG 59 NA Drosophila melanogaster 50 CG17024 FBgn0032437 FBtr0080371 2 1 1 64 2L 12454483 12454585 GTGGTAATCCTATGTGTTCTG 58 12454611 12454629 AATGTCCGGAGAATTTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5421 FBgn0032434 FBtr0080383 2 1 1 74 2L 12446819 12446838 GACATCACTGTCTACTCCTC 58 12446613 12446782 GTCTTGCCACAGGATATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14947 FBgn0032406 FBtr0080297 3 1 1 60 2L 12077550 12077568 CGGATACACTATGGCATGG 59 12077589 12077610 CGAAGTTCTGACTTCTTATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31871 FBgn0051871 FBtr0080104 2 1 1 96 2L 10668329 10668703 AGGATTAGGCTACATGCTC 58 10668763 10668781 GCTATTCAAACTGGTGTGG 58 NA Drosophila melanogaster 50 CG31755 FBgn0051755 FBtr0079972 2 1 1 75 2L 9999032 9999116 AAATCAGAGCCCTAATCGG 59 9998975 9998993 CTGAATGTTTCTCACTGGC 58 NA DesignNoJunction Drosophila melanogaster 50 nAcRalpha-30D FBgn0032151 FBtr0079913,FBtr0079916,FBtr0079912,FBtr0079914,FBtr0079915 3 5 6 88 2L 9809281 9809299 ATAGACATCACGTGGTTCC 59 9807947 9809230 ACCAAATCCAACTGATTTCC 58 NA Drosophila melanogaster 50 CG31609 FBgn0051609 FBtr0079769 1 1 1 228 2L 9097672 9097690 GTAGTAGCAGTTGTCCCTC 59 9097940 9098269 AACAGACGTGATTTGGAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG7466 FBgn0031981 FBtr0079541 1 1 1 80 2L 8049148 8049168 GTTCTCGATTCAGAATCAACG 59 8049209 8049290 GGTACATCAACCTCGTAGTC 59 NA Drosophila melanogaster 50 Snoo FBgn0085450 FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718 2 4 5 60 2L 7895543 7895561 GCACATGCATCACTTTAGC 59 7895501 7895519 GGATTGAGTGGGTGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13796 FBgn0031939 FBtr0114496,FBtr0079504,FBtr0079503,FBtr0079505 3 4 4 82 2L 7728553 7728574 CCTTACTCATATTACCATTGGG 58 7728428 7728510 TCATACCAACGTGATCCTC 58 NA Drosophila melanogaster 50 Pvf2 FBgn0031888 FBtr0079423 2 1 1 124 2L 7070929 7074254 AATAATCGTACCAGGGAGC 58 7070823 7070841 TAGAACGTGTTCGTTTCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG11149 FBgn0031732 FBtr0079168,FBtr0079169 1 2 2 150 2L 5719427 5719525 AATGGTGGTATCACGTTGG 59 5719295 5719313 GTACACGTGAAAGGAGACC 59 NA Drosophila melanogaster 50 CG14013 FBgn0031720 FBtr0079121 1 1 1 69 2L 5553325 5553397 AAGATACTATCGACCATCGT 57 5553275 5553293 CTATGTAGCCGGAGATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hoe2 FBgn0031649 FBtr0077394,FBtr0114514 2 2 2 80 2L 4935314 4935333 GCTTTGGATTTCTGACTGTG 59 4935176 4935274 GAAGTATATCCTGGAACACCTG 59 NA Drosophila melanogaster 50 CG11927 FBgn0031638 FBtr0077386 2 1 1 60 2L 4848143 4848162 AACTATCCTCCGATGAATCG 59 4848185 4848203 CAAAGCCCATGTTCATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Umbrea FBgn0031613 FBtr0077444 1 1 1 60 2L 4577825 4577843 GTCGGACAATGGGTATGAG 59 4577783 4577801 CTAGGCATTTCGTGATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15403 FBgn0031504 FBtr0077661 2 1 1 60 2L 3129070 3129088 GGCATTCAAGGAGTATGGA 59 3129112 3129130 AGAAATGACGGAAATGACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 NTPase FBgn0024947 FBtr0077680,FBtr0077682,FBtr0077683,FBtr0077681 3 4 4 66 2L 2881300 2881382 GCTTTACAAGAAGATAGATGGC 59 2881255 2881273 AGTCAGAACGTTGTATGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG9894 FBgn0031453 FBtr0077713 1 1 2 100 2L 2753623 2753641 CAAAGGAATCCGTGAAAGG 58 2756052 2756070 CTCATCGGAATCTCCATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2843 FBgn0031452 FBtr0077712 2 1 1 295 2L 2745204 2745277 TGGCGGAGATCTAAATCTG 58 2745598 2745616 AGGACTTGTCGATCTTACG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33125 FBgn0053125 FBtr0077742 3 1 1 60 2L 2651100 2651120 TAAACGAGGTTAAGGTATCCC 58 2651060 2651081 CGATTGGATTTAACTTGACGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 p16-ARC FBgn0031437 FBtr0077694 1 1 1 110 2L 2580567 2580647 AACCAGAATGTGAAGGACC 59 2580720 2580739 TATTAGGTCGTTCTGGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3557 FBgn0031423 FBtr0077790 3 1 1 103 2L 2385444 2385517 GTCGAATGAAGGATCAGCT 59 2385359 2385377 ATGAAGATGGATAAGCCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5561 FBgn0031333 FBtr0077947 2 1 1 62 2L 1353829 1353896 CTGTCTTTGATACTCGCCA 59 1353785 1353803 TATCGTAACAACGGACCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4341 FBgn0028481 FBtr0077949,FBtr0112936 1 2 2 95 2L 956937 957062 TCATTATGCCGAATTCCTC 57 957121 957139 AAAGTATAATCGTTGGGCG 57 NA Drosophila melanogaster 50 KH1 FBgn0086130 FBtr0078009 2 1 1 60 2L 812442 812462 CCTCCTAGATGATACGTTCAC 59 812484 812567 GTGGAAGGGAAATCTCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17075 FBgn0031239 FBtr0078142 3 1 1 60 2L 265022 265040 AAGGATCGTTGATCTCAGC 59 264980 264998 GTGTACTGCAGATAAGTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17159 FBgn0039945 FBtr0113720,FBtr0113717,FBtr0113718,FBtr0113721,FBtr0113719 1 5 5 60 XHet 67548 67566 TACTCACTTAAATCGCCCA 58 66298 66316 TTATAGACGTTTGATGCGG 57 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 CG17450 FBgn0040028 FBtr0070056,FBtr0070057 1 2 2 252 X 21477876 21477894 CATCGAGAAGTTCGATCCC 59 21477479 21477497 CTGTTGGACCTTCTGAAGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG1631 FBgn0031101 FBtr0077297 2 1 1 60 X 20198682 20198702 GTTTCGGATATTTCCACTAGC 58 20198723 20198742 CGCTATCGCTAGTATAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089658,FBtr0089660,FBtr0089662 1 3 7 102 X 17824693 17824711 ATTACTTCTATCACCGCGA 58 17824461 17824627 AAATGTTGACCTAGTGCAC 57 NA Drosophila melanogaster 50 CG4872 FBgn0030799 FBtr0074339 1 1 1 96 X 16776518 16776536 AAGGAGCTAGAAATCAGCA 58 16776687 16776705 TTGCGCTAGAGATAATGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG3588 FBgn0025643 FBtr0070548,FBtr0100550,FBtr0070549,FBtr0070547 1 4 4 293 X 2816306 2816324 TTGAGTCCCTTGGAAAGAC 59 2816666 2816684 ATTGGAGCTGATGGAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32795 FBgn0040384 FBtr0070492,FBtr0070491,FBtr0070493 3 3 3 94 X 2678515 2678593 TATTCAACTACAGGGCCCT 59 2678439 2678457 GTTCACCTTGAGGATGGAC 59 NA Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 1 13 13 80 X 2567070 2567088 ATGGAGGGTAATCACACCT 59 2567131 2567221 CTGTATTGAGAGCTCATGCT 59 NA Drosophila melanogaster 50 Cyp4d1 FBgn0005670 FBtr0070428,FBtr0070427 3 2 2 183 X 2053812 2053830 GAAGAAGTGCTTTGAGGAG 58 2053587 2053665 GAGCTTTCCATTGATCTCG 58 NA Drosophila melanogaster 50 mRpL16 FBgn0023519 FBtr0070314 2 1 1 246 X 1784568 1784656 AATACCAGAATGTGGAGCAG 59 1784865 1784883 GTGTTGACGTTCATCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG32806 FBgn0052806 FBtr0070301 1 1 2 60 X 1684082 1684100 AATGTAGTGCACCGAAGTC 59 1684124 1684142 GTCGTTGAACTGACATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41579 FBgn0085705 FBtr0114154 2 1 1 90 U 6943939 6943957 TTTACTCCAAAGGACGTCG 59 6944008 6944029 CTTCTACCTCATTTATCCACTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syt7 FBgn0039900 FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475 2 5 6 155 4 323148 325656 TAGTTATAGTCTTCGGGCTG 58 323012 323033 CCAATCAAAGGAGTTCTAAGAC 58 NA Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 2 14 14 109 3R 27690344 27690863 AAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 PH4alphaNE3 FBgn0051017 FBtr0085667 2 1 1 99 3R 26430475 26430552 CAATGTTCGGTTCAACTCC 59 26430615 26430633 TATCCACTGTAATGCCTGC 59 NA Drosophila melanogaster 50 CG31427 FBgn0051427 FBtr0113407,FBtr0113406 2 2 2 60 3R 25065159 25065177 TATGTTCACCGGACTTAGC 59 25065061 25065136 GGGAAGGAAATCATCTTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG31065 FBgn0051065 FBtr0113383 2 1 1 125 3R 22990059 22990077 GAGTGTTCAGGACCTAAGC 59 22990166 22990239 AGTAGCACAGTACACTCCA 59 NA Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100337,FBtr0100340,FBtr0100339,FBtr0085093 1 4 9 70 3R 22699811 22699829 ATGAATCCTTACTCGGCAG 59 22699705 22699723 TTGTAGCCCGTATATGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10560 FBgn0039325 FBtr0084852 1 1 1 83 3R 21144643 21144664 GAACTACTCTAAGAAACTGCCA 59 21144518 21144599 ATAGAGCAAATGAAGGCCC 59 NA Drosophila melanogaster 50 CG5315 FBgn0038984 FBtr0084283,FBtr0084284,FBtr0084282 3 3 3 129 3R 18370410 18370491 TAATTCTGATGGGCCTCCT 59 18370242 18370260 GCAATGACCAGTATGTGGA 59 NA Drosophila melanogaster 50 Stat92E FBgn0016917 FBtr0089486,FBtr0089485,FBtr0089487 1 3 5 80 3R 16367271 16367415 GAAGACAGGATAATGTCCG 57 16367209 16367228 ATCTTCGTTGAACTTTAGGG 57 NA Drosophila melanogaster 50 CG4433 FBgn0038763 FBtr0083843,FBtr0083842 1 2 2 85 3R 15845001 15845019 ACTCGATCAATGTGGTCAG 59 15844873 15844952 ATTCAGTATGCACCAATGC 58 NA Drosophila melanogaster 50 tws FBgn0004889 FBtr0082186,FBtr0082187 1 2 8 86 3R 5955360 5960550 AAGCCAGCAAGTAATGGAG 59 5955292 5955310 TATGATGTCTGCATCCGTG 59 NA Drosophila melanogaster 50 CG7408 FBgn0036765 FBtr0075142 1 1 1 129 3L 17873604 17873691 TAAATACGGGAATGCAGCA 59 17873784 17873802 AAATGCCACTTTCCAAGGA 59 NA Drosophila melanogaster 50 Taf4 FBgn0010280 FBtr0075449,FBtr0075448 1 2 5 93 3L 16109259 16109277 CCAGCAATAACAGCAACAC 59 16109334 16110655 TTGGTCATAGAAGCTGCAG 59 NA Drosophila melanogaster 50 NijA FBgn0036101 FBtr0089569,FBtr0089570,FBtr0089571 2 3 3 149 3L 10687816 10688132 ATATTCCAGATTGCTGTGGG 59 10687686 10687707 GGCTGATATTAGAACATTGACC 58 NA Drosophila melanogaster 50 CdsA FBgn0010350 FBtr0076688 1 1 1 80 3L 8122301 8122563 CCGGATAGATGGAAGAACTG 59 8122605 8122624 ACCATAGATGATCAATGCGA 58 NA Drosophila melanogaster 50 CG34030 FBgn0054030 FBtr0100085 2 1 1 95 3L 7067833 7067942 CATTGTAGCTTACTGTCATGC 59 7067758 7067778 GGAATAAACGATCCAATCAGC 59 NA Drosophila melanogaster 50 sif FBgn0085447 FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713 1 5 8 94 3L 5692112 5697030 GTTCCTTCGCAAGATTTCG 59 5697088 5697106 TATATGGTGACGCCATGAC 59 NA Drosophila melanogaster 50 CG4065 FBgn0034982 FBtr0100398,FBtr0072280 1 2 2 97 2R 20024113 20024134 CCAGTTATCAGTTTCTAGAGGA 58 20023979 20024055 GATAAAGAAGTTCAGCGCC 58 NA Drosophila melanogaster 50 CG34040 FBgn0054040 FBtr0100095 3 1 1 60 2R 17720218 17720236 ACTACACAATCCACCACAG 59 17720176 17720194 GTTTATCGGTTGTGGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Acox57D-d FBgn0034629 FBtr0071607 2 1 1 116 2R 17277626 17277644 GAGGAGGTCTACAATTCCA 57 17277724 17277803 ATTGAATAGTCCTCCAGGC 58 NA Drosophila melanogaster 50 Pu FBgn0003162 FBtr0071578,FBtr0071580,FBtr0071579 2 3 3 82 2R 17069022 17069040 CTTCTACGGCAAAGTTTCC 58 17069086 17069163 ATATTTCGACAATGCGTGC 59 NA Drosophila melanogaster 50 CG8920 FBgn0027529 FBtr0086280,FBtr0086279 3 2 3 132 2R 16207405 16207423 ATCGTCGCAGATTACATGG 59 16207518 16209192 TGATGAACACCTGATTACCG 59 NA Drosophila melanogaster 50 Or56a FBgn0034473 FBtr0086344 1 1 1 84 2R 15657948 15657966 CACCTTTATCACTTGCCTC 58 15657818 15657900 TCGGGTAATATCCATCTCC 57 NA Drosophila melanogaster 50 Dp1 FBgn0027835 FBtr0086683,FBtr0086681,FBtr0086680,FBtr0086679,FBtr0086678,FBtr0086682 1 6 6 83 2R 14304949 14304967 CATCTCCTCGATCATGGAG 59 14305013 14305092 CGAATAGTGACCTTATCGCT 59 NA Drosophila melanogaster 50 Arf51F FBgn0013750 FBtr0087377,FBtr0087375,FBtr0087379,FBtr0087376,FBtr0087378 1 5 5 90 2R 11211571 11211592 GAGCTGCATAGGATAATTAACG 59 11211643 11211715 GTTTCATTGCATCAGGCAG 59 NA Drosophila melanogaster 50 beta4GalNAcTA FBgn0027538 FBtr0087539 1 1 1 81 2R 10147579 10147599 CAATCTTTACAACTGTCCACG 59 10147642 10147717 TGATCGATAAGGCAACCTG 59 NA Drosophila melanogaster 50 cg FBgn0000289 FBtr0087526,FBtr0087528,FBtr0087529 2 3 7 108 2R 10064189 10065378 CAAGAACTGTGACATACTTCC 58 10065448 10065466 CTCCAACTTTAGGTTGGGT 59 NA Drosophila melanogaster 50 bic FBgn0000181 FBtr0087783,FBtr0087782 2 2 2 142 2R 8757979 8757997 GAAGAAGATCGTCCACTCC 59 8758102 8758121 GATTGTTGAAGTGGATGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8776 FBgn0033764 FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869 3 5 5 98 2R 8548250 8548271 CATAAGGTCAACTTCTATAGCC 58 8548117 8548192 TACCAGAAAGCTGAAGAAGC 59 NA DesignRelaxed Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 2 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421092 TAGTAAGGTAGCAAAGTAGGG 58 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 2 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421092 TAGTAAGGTAGCAAAGTAGGG 58 NA Drosophila melanogaster 50 Hr46 FBgn0000448 FBtr0088366,FBtr0088368,FBtr0112799,FBtr0088367 3 4 4 111 2R 6095623 6095704 CAATTTCCGCGATATTTCCA 58 6095531 6095550 CGAATCTATCGAGAACAGCT 59 NA Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995 1 9 9 157 2R 3355133 3355208 AGAAGTTGTCATCAGCTCG 59 3354994 3355012 GTAGTAGTTGGTCAGCACC 59 NA Nonspecific Drosophila melanogaster 50 Nipped-A FBgn0053554 FBtr0091528 3 1 2 81 2R 1082459 1082480 GGGATCGATTTAGTAGAAACTC 58 1075848 1082417 ATAGCATAACGCACTTTCC 57 NA Drosophila melanogaster 50 CG31687 FBgn0051687 FBtr0081361 1 1 1 77 2L 20451373 20451391 ATTTCCTACTTTCAACGCG 58 20451432 20451450 AAGTGGAGTCTATGATGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lar FBgn0000464 FBtr0081260,FBtr0112800 3 2 2 81 2L 19729578 19729598 CGCTATCAGTATTATGTCGTG 58 19729639 19729729 CATCCGTGACCTTAAATTCAC 59 NA Drosophila melanogaster 50 CadN FBgn0015609 FBtr0081014,FBtr0081018,FBtr0100314,FBtr0081019,FBtr0100315,FBtr0081017 2 6 12 102 2L 17651480 17652675 CTCTGATACTACTCGTCTTGG 59 17651398 17651416 TTGATGATATTCTCGCGCA 59 NA Drosophila melanogaster 50 rk FBgn0003255 FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610 1 4 5 131 2L 13991706 13992947 GTGGTCGTCCTAGATTTGG 59 13991010 13991029 ATAGAATGCATTGGGATCCA 58 NA Drosophila melanogaster 50 A16 FBgn0028965 FBtr0080427 2 1 1 106 2L 13019810 13019828 AATGAATCGAGAACGACGT 59 13019654 13019674 CCTAATACCTAAGTAACCGCT 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Gyc32E FBgn0010197 FBtr0112856 3 1 2 92 2L 11142405 11142783 CATATTCGCGACATTTGCT 58 11142331 11142351 CGATATGTTGTCAAAGACACG 59 NA Drosophila melanogaster 50 Sur FBgn0028675 FBtr0079963 3 1 1 80 2L 10188951 10189035 ATCAAGTGTCTGTGTCATATCC 59 10188892 10188912 CATAGATACTGGAACGTTTGC 59 NA Drosophila melanogaster 50 CG16712 FBgn0031561 FBtr0077546 2 1 1 73 2L 3696382 3696400 AGTTATCATCCCGAAACCA 58 3696327 3696345 CCAAATCGGTTCTCATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr22e FBgn0045497 FBtr0077888 1 1 1 60 2L 1784330 1784348 GCATTCACGACATTCAGAG 58 1784372 1784390 TTCCAGAAACTTCTCAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 1 7 8 80 2L 119224 119297 TATAATGCAGACTGATGTCCTG 59 119165 119184 TTTCCCAACTTCAAGTTTGC 59 NA Drosophila melanogaster 50 CG31973 FBgn0051973 FBtr0113416,FBtr0078163,FBtr0078164 3 3 4 93 2L 38598 38618 CGATGGTATTATTCACCAAGC 59 35203 38543 CGACTCAACTCTATAGGCG 59 NA Drosophila melanogaster 50 CG12679 FBgn0031103 FBtr0077332 3 1 1 61 X 20247162 20247180 CTACCTGGTATCCGATCAG 58 20247119 20247137 ACAGTGGAATCAACGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1597 FBgn0030289 FBtr0073458 1 1 1 60 X 11241105 11241125 ATAAATCCTATCTCAGCACGG 59 11241065 11241084 GAGAAGAGCGTATCCTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lz FBgn0002576 FBtr0112814,FBtr0071320 1 2 2 220 X 9180746 9180765 GTTCACCAGGATCTATTGTG 57 9182497 9182515 CAATTCTCATCGTTTCCCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3071 FBgn0023527 FBtr0070398 1 1 1 132 X 2157021 2157108 GAAACCAGAACTACTCAAGG 57 2157203 2157221 CTTTACCACAAGCATGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41318 FBgn0085611 FBtr0114055 1 1 1 121 U 214329 214347 AAACTACGTGGAGTCAGAC 58 214432 235400 CATTACTGCAGACGTTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fer2LCH FBgn0015221 FBtr0085622,FBtr0085624,FBtr0085623 3 3 3 89 3R 26215457 26215475 CATATTGAGCCCGAGATCC 59 26215528 26215546 GTAGGAGTTGAAGTGGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2310 FBgn0039665 FBtr0085434,FBtr0085433 3 2 2 171 3R 25317790 25317808 ACAATAATGGCCGTCTACC 59 25317637 25317655 AGTCCATGAAGTCGAAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpb10 FBgn0039218 FBtr0084688 1 1 1 88 3R 20543350 20543368 CAATCCGTTGTTTCACCTG 59 20543420 20543521 ATCTCCTTCGGTGTATTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5217 FBgn0038694 FBtr0083741 1 1 1 60 3R 15073534 15073555 CACTATAAGTCGCTTCTTTACC 58 15073384 15073513 CGAAGGATCTTGAACATCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7217 FBgn0038570 FBtr0100619 1 1 2 105 3R 13991872 13992085 ATGGTGAAAGTAGGAGACTC 58 13991786 13991804 AGATGATCACCTTCTTGCC 59 NA Nonspecific Drosophila melanogaster 50 CG9297 FBgn0038181 FBtr0082828,FBtr0082827 3 2 2 80 3R 9601110 9601129 AAGATCTTGATGGAGATGGC 59 9601170 9601260 CTTCATCCTGAGAATTGTTGG 58 NA Drosophila melanogaster 50 Paip2 FBgn0038100 FBtr0082693 3 1 1 113 3R 8809502 8809522 TAATTTACGTAGTGGACGACG 59 8809597 8809678 GTTGCAGTTCGTTCTTGTC 59 NA Drosophila melanogaster 50 Ccp84Ad FBgn0004780 FBtr0081690 2 1 1 272 3R 2518877 2518895 CTACAAGAGAACCGTCCAG 59 2519131 2519149 TAGGAGGTGTAGGTAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7611 FBgn0037094 FBtr0078364,FBtr0078360,FBtr0078365,FBtr0078363,FBtr0078359,FBtr0078366,FBtr0078361,FBtr0078362 3 8 8 110 3L 21518808 21519093 GACCTTAAGGACCTAGAGC 58 21519167 21519185 ATTGCCATCATCCAAATGC 59 NA Drosophila melanogaster 50 CG5282 FBgn0036986 FBtr0078233 1 1 1 219 3L 20418159 20418229 ACAGACCATGCTCTTTGAG 59 20417905 20417923 CAGGTTGAGCAAGATTACG 58 NA DesignNoJunction Drosophila melanogaster 50 Hdm FBgn0036955 FBtr0074826,FBtr0074825 3 2 2 97 3L 20221968 20221986 AATAAGGTTGTGCTCTGCT 59 20222046 20222182 AACATTTCTCCTCTACTCGC 59 NA Drosophila melanogaster 50 Tsp74F FBgn0036769 FBtr0075154,FBtr0075155 1 2 2 80 3L 17886317 17886412 CTTTGTGATATTCGTGGGT 57 17886255 17886273 AACTCATTGACGAAACTCC 57 NA Drosophila melanogaster 50 comm2 FBgn0041160 FBtr0075580 1 1 1 60 3L 15691548 15692307 GCAATTATCGCAACAATGC 58 15691506 15691527 AACGCCTCTATATCTACAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL10Ab FBgn0036213 FBtr0076032 2 1 3 64 3L 11816404 11816422 GCCTGAAGAACTACGATCC 59 11816450 11816770 AATGTGCTTCAACTTGACG 58 NA DesignRelaxed Drosophila melanogaster 50 Doc2 FBgn0035956 FBtr0076547,FBtr0100367 3 2 2 255 3L 9008042 9008060 GATGCGACTAAGTGTTTCC 58 9007727 9007823 AATATGGCCGCTGTTATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15212 FBgn0040842 FBtr0077163 3 1 1 91 3L 5124707 5124863 AAGTACCTAGCTCTGACCA 59 5124918 5124936 ATATTATCGCCGATCAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubi-p63E FBgn0003943 FBtr0073179,FBtr0073177,FBtr0073178 1 3 3 89 3L 3901649 3901667 AGACAAGGAAGGAATTCCC 58 3901578 3901596 ATGTTGTAATCGGACAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9018 FBgn0035318 FBtr0072910,FBtr0072909 2 2 2 126 3L 2235961 2236056 CATACAGGTGAACGAAGCT 59 2235853 2235871 GAGAAGTTCCTTCTGCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9194 FBgn0035192 FBtr0072651 1 1 1 85 3L 1236708 1236726 TCTCGTGGTTTCCTATTGC 59 1236775 1236852 GTATGTCTCGCTTCACCTC 59 NA Drosophila melanogaster 50 18w FBgn0004364 FBtr0086309 3 1 1 60 2R 16002854 16002873 GTACTTGAAATCGGTACCCT 59 16002894 16002914 CTTCTCCCAGAAGTATCTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sm FBgn0003435 FBtr0086492,FBtr0100233,FBtr0100232 3 3 7 106 2R 15488466 15488484 AGTCAAATGACGACCTACG 59 15461823 15488397 CAAGACATCAACTGTGATGG 58 NA Drosophila melanogaster 50 Hsf FBgn0001222 FBtr0110964,FBtr0086782,FBtr0110966,FBtr0110965 1 4 4 234 2R 14020427 14020509 TATGGATTCCACAAGATCACC 59 14020213 14020231 AATCCAGATTGTCCTGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11196 FBgn0033248 FBtr0088870 2 1 1 129 2R 3882127 3882146 AAGTTAGTTCCAAGATGGCC 59 3881847 3882035 TAGTTACGTCGCTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cdc23 FBgn0032863 FBtr0081362 3 1 1 60 2L 20461030 20461048 AAATGCCTAGACTCAGAGG 58 20461132 20461150 AGTCAATCGTCTTCAGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG16885 FBgn0032538 FBtr0080559 1 1 2 184 2L 13933467 13933485 CACCTATCCCGTTAAGGTG 59 13932840 13932858 TTTGTAAGTCGTACGTTGG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15482 FBgn0032483 FBtr0080487 2 1 1 60 2L 13211296 13211314 AAGAGATGTCAACACCCTG 59 13211254 13211272 CAGAGGATTAAGGCCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16974 FBgn0032479 FBtr0080489 3 1 1 83 2L 13187087 13187107 TATTTCGAGAATCGACAGTGG 59 13186956 13187043 ATGTACAGTCGTAATCCTGC 59 NA Drosophila melanogaster 50 CG18591 FBgn0031962 FBtr0079560 2 1 1 60 2L 7885224 7885245 GTTATACGAGAACATATCGCTG 58 7885185 7885203 CATGTACTCATCGAATCCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 stai FBgn0051641 FBtr0079198,FBtr0079196,FBtr0079197 3 3 3 98 2L 6121936 6122015 GTCGCATTTCTCTAGAAGC 58 6122076 6122095 ACTCATTGGTGATCTCATCC 59 NA Drosophila melanogaster 50 CG3246 FBgn0031538 FBtr0077572 2 1 1 101 2L 3461370 3461446 GAAATGAGATTCAACGGTGG 59 3461288 3461307 TACTGTAAAGGGTCCATTGG 59 NA Drosophila melanogaster 50 Gs1 FBgn0001142 FBtr0078115,FBtr0078114 3 2 2 65 2L 133222 133240 GGATTAAGGCATGTGACGA 59 133269 133287 CATACTCCTCAGCTATGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4822 FBgn0031220 FBtr0100307,FBtr0100308,FBtr0100310,FBtr0100309,FBtr0078159,FBtr0078158,FBtr0078156,FBtr0078157 3 8 8 82 2L 118982 119000 GAAAGCGTTTATGCATTGC 58 118862 118938 ATCGTCTAAACCAGTTGTAGG 59 NA Drosophila melanogaster 50 M(2)21AB FBgn0005278 FBtr0089429,FBtr0089431,FBtr0089430,FBtr0089436,FBtr0089435,FBtr0089432,FBtr0089433,FBtr0089434,FBtr0089437,FBtr0089428 2 10 10 115 2L 113361 113444 GATTGTCAAGGACCTAAACC 58 113522 113540 AGTTGTCAATCTCCAGAGG 58 NA Drosophila melanogaster 50 snoRNA:Me18S-C1280 FBgn0086059 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR31579 FBgn0051579 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG14566 FBgn0037127 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30227 FBgn0050227 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR30316 FBgn0050316 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:N5:42Af FBgn0011936 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi18S-1854c FBgn0083040 FBtr0113567 1 1 1 60 X 17039326 17039346 CGTTGTGGTATTCAATTGGAC 59 17039286 17039305 ATGCCCTTAAGAGGAATAGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40486 FBgn0069972 FBtr0111188,FBtr0111187 1 2 2 71 X 22361362 22361380 TCATTAACAGCCTAACGGG 59 22361309 22361327 GATACATGTTGAGCACCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15445 FBgn0031161 FBtr0077252,FBtr0077251,FBtr0077253,FBtr0077250 1 4 4 80 X 20989729 20989747 GTACGAAAGGATCAATCGC 58 20989788 20989899 TGATCCTCCATCTCTATTAGGT 59 NA Drosophila melanogaster 50 Mgstl FBgn0025814 FBtr0077243 1 1 2 102 X 20914131 20914149 GTTGAATCCCAGACCAGAC 59 20914215 20914233 GATTGGAGAGGCTTAGCAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 sw FBgn0003654 FBtr0089406,FBtr0089407,FBtr0089401,FBtr0089404 2 4 13 137 X 20101657 20103198 ATTCACAGACGACGAAGAG 59 20101538 20101556 TTCTTGATCTCGAGTGGTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Grip84 FBgn0026430 FBtr0074775,FBtr0074777,FBtr0074776 1 3 3 80 X 19457156 19457175 TCTCCAAGTACCAAATGCTC 59 19457033 19457114 TTTCCTTCCAAATCTTGCAC 58 NA Drosophila melanogaster 50 CG14190 FBgn0030979 FBtr0074663 2 1 1 60 X 18960832 18960852 CATGTTGTCCCATTACTTTCC 59 18960874 18960892 GGCAAACCATTTCTTGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CCKLR-17D1 FBgn0030950 FBtr0113002 1 1 3 165 X 18607655 18607673 ATACAACCTGTTCCTGGAC 58 18603081 18603099 CTTCTTGCTCTCCAGACTC 59 NA DesignNoJunction Drosophila melanogaster 50 beta-Spec FBgn0003471 FBtr0074454 3 1 1 80 X 17562407 17562540 TGGGATAAGGTATACATGGC 58 17562580 17562601 TTCGGGATTACTCTTATAACCC 59 NA Drosophila melanogaster 50 X11L FBgn0026313 FBtr0074451 2 1 1 83 X 17497495 17497737 AACAAAGAGGGTCTCTTGG 59 17497784 17497802 GACAAGTTGAGTGGATCCA 59 NA Drosophila melanogaster 50 CG4829 FBgn0030796 FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337 1 5 5 90 X 16718725 16718743 GAAGGGATACCATGTGTCG 59 16718794 16718964 CAAATAGATTTGGTACTGCTCG 59 NA Drosophila melanogaster 50 Anxb11 FBgn0030749 FBtr0074303,FBtr0074302 1 2 2 108 X 16312124 16312142 TGATCCGTGTGATCATCAC 59 16311918 16311996 GAAGTATCGCCCTTGATCC 59 NA Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 1 7 7 80 X 16273085 16273103 TTTGGTTATGCATGAGCAC 58 16273145 16273233 CAGAAGGCACATTTGTTATCC 59 NA Drosophila melanogaster 50 Stim FBgn0045073 FBtr0074161,FBtr0074160,FBtr0074159 3 3 3 81 X 15829503 15829521 AGAATGTTCTGTACGGTCG 59 15829366 15829460 GTAATACGTGCTCTAGAACCC 59 NA Drosophila melanogaster 50 shi FBgn0003392 FBtr0074119,FBtr0074120,FBtr0074118,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0111036,FBtr0074121,FBtr0111037 1 9 9 110 X 15788792 15788878 AGTTACCGAATATGGCGAG 59 15788952 15788970 TTGTTACTACCGGTCACAC 59 NA Drosophila melanogaster 50 cngl FBgn0029090 FBtr0089294,FBtr0089293 2 2 2 82 X 15293119 15293253 GCCTAATGGTATACGACGA 58 15293055 15293074 TATCAGCGCTATCATATCGA 57 NA Drosophila melanogaster 50 dob FBgn0030607 FBtr0073961 2 1 1 60 X 14961553 14961573 CGACTTCATATTTCCCTTACC 58 14961595 14961613 TGAACTCCGACATTACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1681 FBgn0030484 FBtr0073778 2 1 1 161 X 13302598 13302697 CGATAATGCGGTGAATCTC 58 13302822 13302911 TTGTAGCCAATGGATTTCG 58 NA Drosophila melanogaster 50 HDAC4 FBgn0041210 FBtr0100425,FBtr0073797 1 2 3 103 X 13165612 13170475 TCATGGAGCTCAAGAAGAG 58 13165527 13165548 CTCCAATTGAAGTTTATGCTCC 59 NA Drosophila melanogaster 50 CG4004 FBgn0030418 FBtr0073686 3 1 2 60 X 12638835 12638853 AAAGGTACAGGAATCGGTC 58 12638876 12638895 ATCCATCAGATGAAACCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cac FBgn0005563 FBtr0100305,FBtr0100304 3 2 10 171 X 11856313 11856332 CATTAACATGGGATTCACCG 58 11848303 11856053 GATTGAGTTCGAATCGTGC 59 NA Drosophila melanogaster 50 CG32667 FBgn0052667 FBtr0073474 1 1 1 82 X 11033905 11033923 ATCTGAGCAAACCCTATCC 58 11033841 11033859 TTCACATTTGCAGTTCGAC 58 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG1826 FBgn0030228 FBtr0071497 1 1 1 82 X 10663946 10663967 GGCAATACTTATACTTCGAAGC 59 10664009 10664096 ATGGAATACCCGGTTTACAG 59 NA Drosophila melanogaster 50 spri FBgn0085443 FBtr0112688,FBtr0112689 2 2 4 86 X 10386360 10390836 TCGTGAAGTCTTATGTCACC 59 10386293 10386311 AATTGAAGGGTGTATGCCC 59 NA Drosophila melanogaster 50 CG12643 FBgn0040942 FBtr0071481 1 1 1 94 X 10159006 10159024 GAATCCATTCGATTCCGTC 58 10158930 10158948 AATAGCGATAGGATACCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34408 FBgn0085437 FBtr0071439,FBtr0112675 2 2 4 89 X 10120395 10120556 ACCACCTATGATAATGCCC 58 10120609 10120627 ATTCAGATCCGTCTTCCAC 59 NA Drosophila melanogaster 50 Aats-lys FBgn0027084 FBtr0071367,FBtr0071366 2 2 2 71 X 9501701 9501721 CGCTATCTTGATCTCATTCTC 58 9501589 9501668 GTACGAGATGATCTTGGCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG9034 FBgn0040931 FBtr0071343 2 1 1 112 X 9053729 9053747 CAACTACTATGCCAAGGAC 57 9053635 9053653 TCCTCTAGTCATCCTCGTC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG2256 FBgn0029995 FBtr0071115 2 1 1 91 X 7978310 7978328 TTGTGCTCAAGAAGTTCGA 59 7978182 7978200 CTCGATTAGCAATGGTTCC 58 NA DesignNoJunction Drosophila melanogaster 50 RpS6 FBgn0004922 FBtr0071136,FBtr0071137,FBtr0071135 1 3 3 101 X 7794174 7794192 GAAGAAGGGTGAGAAGGAC 59 7794091 7794109 CTCAAGTTGTAGAGCTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15325 FBgn0029968 FBtr0071088 1 1 1 93 X 7780159 7780177 TGGAGATTTGGTCGTTTCC 59 7780372 7780390 ATGGATCTAACGATCAGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10920 FBgn0029963 FBtr0071150 2 1 1 60 X 7747802 7747820 TACGATTGGGCTACAACAC 59 7747760 7747779 AGTTGGATAAGAACCTTGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9650 FBgn0029939 FBtr0071044,FBtr0112958,FBtr0071043,FBtr0071045,FBtr0112959,FBtr0112957 3 6 6 64 X 7133121 7133139 AGAACTGCAACATGTTCCA 59 7133167 7133185 ATTGAAGAGCGGTACTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17717 FBgn0029877 FBtr0070944,FBtr0070943 3 2 2 87 X 6484217 6484235 TGATTGTGAAGCATCTGCT 59 6484350 6484369 ATATTATCCATGCACTGCAG 57 NA DesignNoJunction Drosophila melanogaster 50 dx FBgn0000524 FBtr0070914 1 1 1 143 X 6431035 6431121 GTTTACGACATTGCATCGG 59 6431227 6431246 GAATGCAATCTTGAGGAAGC 59 NA Drosophila melanogaster 50 CG15768 FBgn0029806 FBtr0070834 2 1 1 68 X 5670684 5670703 ATTAAATTCGCACCAACTGC 59 5670635 5670653 GTATCGTTCGGTTTCTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15465 FBgn0029746 FBtr0070742 3 1 1 60 X 5070001 5070019 ATCACCGCTATTTGTGGAG 59 5070041 5070061 CGGTTGTGATCTTTGATTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070740,FBtr0100408 2 2 4 219 X 4961634 4961652 CTCCACAATGATTACGCTG 58 4962189 4962207 GTTCACAAACTCAAGCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 Mnt FBgn0023215 FBtr0070580,FBtr0070579,FBtr0070578 2 3 3 122 X 3593200 3593218 TGAAGGAGTGCTATGACCT 59 3593301 3593387 CTTCATGACTCAAGGAATTGAC 59 NA Drosophila melanogaster 50 ng2 FBgn0010294 FBtr0070540 1 1 1 115 X 3134324 3134344 TCACTCACTATAAGCGAAAGG 59 3134229 3134247 TTATTCTTCCGATCTGCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3719 FBgn0024986 FBtr0070233 1 1 1 60 X 1273179 1273198 GTAGTGGACAAGTTCATTGG 58 1273138 1273156 GTTTGTCGATTAGGGTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3638 FBgn0026875 FBtr0070249 2 1 4 196 X 1120309 1127847 GTTTACCTCGAGAGTCTGG 59 1119555 1120149 TACAAGCCTAATCCGATGG 58 NA Drosophila melanogaster 50 CG32816 FBgn0052816 FBtr0070101,FBtr0070102 2 2 2 74 X 227605 227624 ATCAGGAAGCTATCCATCAC 58 211914 211932 AATCATTTGGCTCCATCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG41521 FBgn0085666 FBtr0114113 1 1 1 63 U 2919167 2919185 ACAACCAAGGTTCATTTGG 58 2919211 2919230 GAATTGGACATTATAGCCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40188 FBgn0058188 FBtr0113822 3 1 2 130 U 2233310 2233329 CTTAAACTTTCCTCCCAACC 58 2233483 2233501 GCCGTGAAATTAGCAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Asator FBgn0039908 FBtr0089107 3 1 3 80 4 502326 508434 TCTACGAGTAGAGGAAACG 57 502264 502282 ATCTTGTTTGGAAGAAGGC 57 NA Drosophila melanogaster 50 Syt7 FBgn0039900 FBtr0089138,FBtr0089137,FBtr0100397,FBtr0089134,FBtr0114475 1 5 6 154 4 323148 325655 AGTTATAGTCTTCGGGCTG 58 323012 323033 CCAATCAAAGGAGTTCTAAGAC 58 NA Drosophila melanogaster 50 dpr7 FBgn0053481 FBtr0113462,FBtr0113463 3 2 3 94 4 270593 270667 GTGATTTGGTATCATGGCT 57 270517 270535 CTCGTTGTTCCTACATCAG 57 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156 2 9 10 80 4 103363 106347 CCTAAGATGGGCTTAACTCG 59 106387 106408 CATATCTGAACTTAGCATTGGG 58 NA Drosophila melanogaster 50 CG1792 FBgn0039860 FBtr0085819 3 1 1 60 3R 27442510 27442529 GTTATAGACCTTCTACCCGA 57 27442551 27442570 ATATTTCGTACGGCTCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31524 FBgn0051524 FBtr0110860 1 1 2 84 3R 26339622 26339697 GATAAACCCGTGATTCATGAG 58 26339558 26339576 CTGATGCGTCAAACAAGTC 59 NA Drosophila melanogaster 50 CG9682 FBgn0039760 FBtr0085617 2 1 1 89 3R 26077058 26077076 CTTGAAGTACGGAGAAGCA 59 26077188 26077206 TCATCTCCCAATTCGTGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1983 FBgn0039751 FBtr0085574 2 1 1 143 3R 26002802 26002908 GATCAACAAGATCCTTTCTGTG 59 26002680 26002698 GTGTTGATCTGGATGAGCA 59 NA Drosophila melanogaster 50 CG31030 FBgn0051030 FBtr0110834,FBtr0085579 2 2 2 60 3R 25991125 25991143 TTAACTTCCTGAATCCCGC 59 25991083 25991101 TGGAAATCACTGAGGAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mgat2 FBgn0039738 FBtr0085602 1 1 2 133 3R 25842589 25843357 TCTATCAGAAGGTGGAGGT 58 25842474 25842492 GTCCCAGTTGTAGTCATCG 59 NA Drosophila melanogaster 50 CG7802 FBgn0039704 FBtr0085486,FBtr0085485 3 2 2 80 3R 25648409 25648428 AGCATCTACTACGACAATGC 59 25648471 25648554 CGAGAAGACGTATCCTGTC 59 NA Drosophila melanogaster 50 Pcd FBgn0024841 FBtr0085458 3 1 1 154 3R 25549171 25549189 TCTCAGTTCTGTATTCGCC 59 25549307 25549583 TTCGTTTAGTCGTACCACC 59 NA Drosophila melanogaster 50 Doa FBgn0053553 FBtr0110913,FBtr0110912,FBtr0091524,FBtr0091527,FBtr0091526,FBtr0113466,FBtr0091525,FBtr0091523 1 8 9 80 3R 24745224 24745242 CCGTCATTCAAGATGATGC 58 24745283 24745961 TGGCCATGATCTTATATCTGTG 59 NA Drosophila melanogaster 50 CG34295 FBgn0085324 FBtr0112491 3 1 1 60 3R 24615792 24615811 GAAATCAATCCAATTGCCCT 58 24615833 24615852 TCATTGATACTCTTGTGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6142 FBgn0039415 FBtr0084987 1 1 1 86 3R 21962197 21962215 GGAACCCAATTTCATGCAG 59 21962319 21962337 GGCTTCGATCTAGAAAGCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG11857 FBgn0039303 FBtr0084814 2 1 1 61 3R 21085499 21085517 AGTTCAAGTTCTGGCTGTC 59 21085540 21085560 GAAGAACGTACAAATCAGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31120 FBgn0051120 FBtr0089440 3 1 2 81 3R 20740278 20740296 TTGTCTCTGTCCTGAATCC 58 20740154 20740234 GGCTCAATGTAAGTCTTCAC 58 NA Drosophila melanogaster 50 CG6643 FBgn0039208 FBtr0084647,FBtr0084648 2 2 2 91 3R 20378367 20378626 TATTGGTGTGAGGCTACTG 58 20378681 20378699 AGGTTCTCGTCTTTCTTGG 59 NA Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084570,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 2 6 6 80 3R 20025044 20025062 TAAGACTATGTCCGAGCTG 58 20024921 20025000 TTGATCAGCGTAAACTTGG 58 NA Drosophila melanogaster 50 p38c FBgn0046322 FBtr0084582 2 1 1 60 3R 19975211 19975230 TGTAAGCCAAATACGATGTC 57 19975170 19975188 GGTGATAAACTCCCTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pnt FBgn0003118 FBtr0089717,FBtr0089715,FBtr0089716 3 3 3 157 3R 19117145 19117230 AGAATCTAGTTGGGCACAC 59 19117006 19117024 GTTGGTTGAGTACAATCCG 58 NA InUTR Drosophila melanogaster 50 CG31457 FBgn0051457 FBtr0084405 3 1 1 60 3R 18952686 18952704 AGATCAACATGAACGACCC 59 18952644 18952663 AAGGTGTCCTTGCTATAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7045 FBgn0038978 FBtr0084258 2 1 1 60 3R 18317923 18317943 CCTCAAATACTAACCAATGCC 59 18317965 18317983 GTCATCGAGTCATCCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7956 FBgn0038890 FBtr0100124,FBtr0110891,FBtr0084112 3 3 3 93 3R 17350157 17350176 CTGAAATCTCCGTTTATGGT 57 17350229 17350313 GAGTATAGTCTCCCTTTAATGC 57 NA Drosophila melanogaster 50 mod(mdg4) FBgn0002781 FBtr0084062 3 1 22 100 3R 17190360 17190447 AGGACATCATAACCCATGTG 59 17190279 17190297 AAGAGTAGACAGCTTGTGG 58 NA Drosophila melanogaster 50 sec15 FBgn0038856 FBtr0084034 3 1 1 150 3R 16932439 16932457 GAACCTCATTATGCTGTCC 57 16932243 16932261 TTCCTTGTCGAGAATTTCG 57 NA DesignNoJunction Drosophila melanogaster 50 RhoGAP93B FBgn0038853 FBtr0084036 3 1 1 80 3R 16910190 16910270 TATCAGAGCATGTACTCCTG 58 16910129 16910148 AACCTACTTCATCCACATCC 59 NA Drosophila melanogaster 50 Oamb FBgn0024944 FBtr0083932,FBtr0083933,FBtr0083934 1 3 3 90 3R 16526375 16526393 ATTGTCAACCTAGCTGTGG 59 16526041 16526324 CGAATATCCAAACCTTGAAGAC 59 NA Drosophila melanogaster 50 H FBgn0001169 FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917 2 4 4 171 3R 16452162 16452180 AGTACCGACCAAATGTCTG 59 16452313 16452499 ACAGATTCAGTGGTAAGTCTG 59 NA Drosophila melanogaster 50 CG14285 FBgn0038674 FBtr0083711 1 1 1 67 3R 14851516 14851534 GGTCAACAATCTTTCGCAG 59 14851624 14851642 TGATCAACTCATGGCAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 gukh FBgn0026239 FBtr0089768,FBtr0100317 2 2 4 84 3R 14844132 14844150 CAAGTCCAATTCTTCGACG 58 14844197 14846661 ACGTTGATACCCTTCTTCAC 59 NA Drosophila melanogaster 50 fru FBgn0004652 FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642 1 13 13 131 3R 14261181 14261201 ATGTCAGATACTCAGAGATGC 59 14260763 14260781 TGTTATCTGTGAGACCACG 59 NA DesignNoJunction Drosophila melanogaster 50 PKD FBgn0038603 FBtr0083590,FBtr0083589,FBtr0083591,FBtr0083592 3 4 4 203 3R 14131625 14132352 AGCAGCTCACTGAATATCC 59 14131440 14131458 CTTGTGCGTATTGTACTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG7131 FBgn0038598 FBtr0083598 1 1 2 132 3R 14113419 14113437 TACAAGCTGAGCTACATGC 59 14113248 14113266 AGTTCGGTTGATAGGACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5840 FBgn0038516 FBtr0083454,FBtr0083455 3 2 2 289 3R 13362217 13362236 TATTCGTGATGATTGAGGCC 59 13362560 13362578 CCTATGTGCCTACTTCGTC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Abd-B FBgn0000015 FBtr0083382,FBtr0083385,FBtr0083384,FBtr0083381,FBtr0083383 1 5 5 82 3R 12755407 12755425 AATGCGTATGTTTCCAAGC 59 12755286 12755362 TGGAACCATATCTTGACCTG 59 NA Drosophila melanogaster 50 CG14890 FBgn0038444 FBtr0083300 2 1 1 91 3R 12395998 12396016 TTATTTGCCCGATGTAACG 58 12396071 12396089 TTTCATTATCCTCCGCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 gish FBgn0011253 FBtr0100331,FBtr0100332,FBtr0083264,FBtr0083262,FBtr0083261,FBtr0100333 2 6 8 138 3R 12118541 12119712 CTATTAGGATCACATGCCGA 59 12119813 12119831 GGGCGCAAATATTGAAGAG 59 NA Drosophila melanogaster 50 CG31291 FBgn0051291 FBtr0083243,FBtr0083244,FBtr0113402 1 3 3 81 3R 11740155 11740174 TGGATAAACTGACCAACGAG 59 11737878 11740113 GCAGATATTTCCTCTTTGTGC 59 NA Drosophila melanogaster 50 CG31446 FBgn0051446 FBtr0083163 1 1 1 63 3R 11519480 11519498 ATGTCAGCGATAACTCAGG 59 11519707 11519725 TAATGGTCGAAGGATTGGA 57 NA DesignNoJunction Drosophila melanogaster 50 CG9312 FBgn0038179 FBtr0082825 3 1 1 82 3R 9591682 9591700 GTGATAAGCACCCAGAGTC 59 9591830 9591848 AAATCGTCACTGGTGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 2 8 8 284 3R 9504400 9504475 AACACGACGTAAATCAGGA 58 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG17639 FBgn0038029 FBtr0114565,FBtr0082576 3 2 2 101 3R 8210530 8210937 TCACGGACTACTATTTCCC 58 8211002 8211020 CCAAGATTGTGTTTAGCCA 57 NA Drosophila melanogaster 50 dpr15 FBgn0037993 FBtr0082549 3 1 1 90 3R 7969207 7969225 TAGTCAAACTGGATTCCGG 58 7965843 7969154 GAATATTCACCGTTCAGCAC 59 NA Drosophila melanogaster 50 l(3)neo38 FBgn0086910 FBtr0082533,FBtr0110877,FBtr0110876 2 3 3 125 3R 7596969 7596990 AATATCTCCATACCGTACTCAC 58 7595815 7596883 CTGGTTGAGGACTTCTTCC 59 NA Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082456 1 1 6 158 3R 7418218 7418236 TTTGGTCAGAACACAGAGG 59 7417724 7418096 ATTGCGGAAGACTGATCTC 59 NA Drosophila melanogaster 50 wkd FBgn0037917 FBtr0082414,FBtr0082413 3 2 2 190 3R 7409610 7409628 AAATGTTTCTCGACGAGCA 59 7409782 7409858 GTCCTGCAGGTATACATCG 59 NA Drosophila melanogaster 50 Ugt35a FBgn0026315 FBtr0082374 2 1 1 60 3R 6997298 6997316 CTAATGCAAACCTTTGCCA 58 6997256 6997276 ACTGATCATCCTCGAATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ugt35b FBgn0026314 FBtr0082375 2 1 1 60 3R 6995331 6995352 AATCTCCTCTATCGTATACTCC 57 6995292 6995311 AAGAAAGTCATTCGATCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ugt86Dg FBgn0040253 FBtr0082377 1 1 1 60 3R 6990602 6990622 CATTGAGAGCATTCACTATGG 58 6990562 6990581 AAATTGGTCGTAGAAGAAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SelR FBgn0037847 FBtr0082293 1 1 6 131 3R 6689537 6691230 CGTGAAGAAACGTATACGC 58 6689424 6689442 TTCACGAACTCAATGGAGG 59 NA Drosophila melanogaster 50 CG14688 FBgn0037819 FBtr0113215 2 1 1 92 3R 6504122 6504141 GAACTGATGGTCTACGATCG 59 6503774 6503792 GTGGATTAGAATGCAGGTG 58 NA DesignNoJunction Drosophila melanogaster 50 pyd FBgn0003177 FBtr0089782,FBtr0089781,FBtr0114459 3 3 8 82 3R 4660660 4661006 CATATACGGTACCCTACGAC 58 4660597 4660615 GTAGATGCTGTACTTGCTG 57 NA Drosophila melanogaster 50 CG31284 FBgn0051284 FBtr0081754,FBtr0081755,FBtr0081753 3 3 3 238 3R 3720343 3723577 CAAATAACCGCTTCAAATCG 58 3723778 3723796 CTTCATCTGGTCGATCAGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG1988 FBgn0037464 FBtr0081632 1 1 2 106 3R 2888852 2888870 ATAGAAGCCATCAAACGAG 57 2889017 2889036 CACTGTCTCTTTAATTCGCA 58 NA DesignNoJunction Drosophila melanogaster 50 TfIIFalpha FBgn0010282 FBtr0081719 1 1 1 138 3R 2207862 2207880 AGATGAACAGCTTACCCAG 58 2207982 2208058 CCGTAGTCCTCTACTTTGC 59 NA Drosophila melanogaster 50 Obp83cd FBgn0046878 FBtr0078584 2 1 1 150 3R 1934343 1934999 CATCACCAACATGGAAAGC 59 1935113 1935131 ATTGACAGGATAGTAGGCG 58 NA Drosophila melanogaster 50 Pi4KIIalpha FBgn0037339 FBtr0078756,FBtr0078757 3 2 3 187 3R 1388606 1388694 AAGTTGAGATCAACACCGT 59 1388437 1388456 TTTCTGAATAACAGCATCGC 58 NA Drosophila melanogaster 50 Snm1 FBgn0037338 FBtr0078688 3 1 1 87 3R 1382370 1382388 TGCTAACAGAAGATCGCAG 59 1382493 1382514 TCAGTAAAGTAATCGACTAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1129 FBgn0037279 FBtr0078871,FBtr0078870 2 2 2 116 3R 640400 640418 AGGTGTTCCCTGAAATGAC 59 641009 641029 AGCTTAGATACAGACACATGC 59 NA DesignNoJunction Drosophila melanogaster 50 tub FBgn0003882 FBtr0078918 3 1 1 286 3R 214107 214187 CCTAAATGGCAAAGTCCAC 58 214435 214455 GTTGGAGTTAGTAGTACTCCT 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG9795 FBgn0037234 FBtr0100617 2 1 4 149 3R 151199 151425 AACGTATAATTGCCCTTGAG 57 151537 151555 ATAAGTCCGTAATCGGAGC 58 NA Drosophila melanogaster 50 CG14453 FBgn0037179 FBtr0078519 1 1 1 210 3L 22687212 22687230 TATTTGTTCTGCTCTTGGC 58 22687404 22687422 GAAGAAGTGGTGGTAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33766 FBgn0053766 FBtr0091767 3 1 1 61 3L 22639217 22639236 ATTCCGAAGTTCTTGTATGC 58 22639259 22639278 TTCCTTAACTGGTTCATGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7414 FBgn0037135 FBtr0078441,FBtr0114593 1 2 2 82 3L 21819506 21819584 TAGCAATGGGTTCAAGGTG 59 21819630 21819648 TTCCCAACAATTCCTGACC 59 NA Nonspecific Drosophila melanogaster 50 sa FBgn0002842 FBtr0078401 1 1 1 86 3L 21399044 21399062 CATCGAGGTGATAACCCAC 59 21398681 21398699 AAATTTCCTGAGGATGGGC 59 NA DesignNoJunction Drosophila melanogaster 50 Sin FBgn0028402 FBtr0078288 1 1 1 230 3L 21026150 21026232 TACTCTTTCGTTTCTCCCG 59 21026426 21026444 TTTCATTGTAGTGCTGCTC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 LCBP1 FBgn0036901 FBtr0074957 3 1 4 186 3L 19688119 19688137 TCTGGAATCTATCATGGCG 58 19685468 19686093 CTTGGTACATCTGTACACCTC 59 NA InUTR Drosophila melanogaster 50 ftz-f1 FBgn0001078 FBtr0075086,FBtr0075087 1 2 2 86 3L 18747722 18748241 AAATTGTGCTTCGATTCTGG 59 18747591 18747609 TTCACGAATCATCGGTGAG 59 NA Drosophila melanogaster 50 CG13379 FBgn0036804 FBtr0113179 1 1 1 60 3L 18674640 18674659 GCCAACTATCTGTACCAGTC 59 18674599 18674618 GTGTCTCGTTAAAGATTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33256 FBgn0053256 FBtr0075260 1 1 1 60 3L 16898641 16898659 ATTCTGAGATGCGTTACCT 58 16898683 16898701 CGTAACCTTGTGGATTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4950 FBgn0036587 FBtr0075479 2 1 1 60 3L 16259966 16259986 CACAACTTCAGAAATTGGGAG 59 16259926 16259946 AGATGATGTAGATAGGAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eig71Eh FBgn0014848 FBtr0075583 3 1 1 60 3L 15652348 15652369 GATGTAGAAACAGAGTTAGAGG 57 15652309 15652328 TGAAGTTCGCAAAGATTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12355 FBgn0040805 FBtr0113333 3 1 2 103 3L 15487705 15487725 ACAATAGGAAGATATGCCGTG 59 15486637 15486655 ATAACCTTAGTGGTGCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 Hsc70Cb FBgn0026418 FBtr0075771,FBtr0075772,FBtr0075773 3 3 3 200 3L 14032908 14032927 GATGATATCGACGTCTCGTC 59 14033087 14033172 GTTAAAGACCTGCTCAATAAGC 59 NA Drosophila melanogaster 50 caps FBgn0023095 FBtr0075832,FBtr0111005,FBtr0075833 2 3 3 140 3L 13222156 13222174 GGTTAACGTTGTGTTTGGG 59 13231812 13244269 GTTCTGCCGGTATAATCCT 58 NA InUTR Drosophila melanogaster 50 CG11253 FBgn0036338 FBtr0075894 3 1 1 100 3L 13018563 13018582 GAACTATGCTTTCAACGAGG 58 13018420 13018438 TTAGCTCTATAAGTGGCGG 58 NA DesignNoJunction Drosophila melanogaster 50 Nrx-IV FBgn0013997 FBtr0075999 3 1 2 158 3L 12144500 12145287 ATGTCAAGATGTTCAAGGG 57 12145408 12145488 TTTCAGAGATGTAATCGCAG 57 NA Drosophila melanogaster 50 CG11534 FBgn0046296 FBtr0075995 2 1 1 60 3L 12126160 12126181 CTATAGTGGATTGTACTACTGC 57 12126200 12126220 GGCTGGTATAAAGTTACTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6928 FBgn0036240 FBtr0076049,FBtr0076050 2 2 2 91 3L 11999281 11999600 TTTGAACAGATGCTCTCGG 59 11999655 11999673 CCAAAGGCTTTCGAAATGG 59 NA Drosophila melanogaster 50 CG17826 FBgn0036227 FBtr0076042 1 1 1 60 3L 11943289 11943309 ATTACACCGAATCCAGATGAC 59 11943331 11943349 TCACTATGATTCCGTCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6091 FBgn0036180 FBtr0076143,FBtr0076141,FBtr0076142 2 3 3 104 3L 11600443 11600549 ACTGCTACCAGTCAAATCC 59 11600357 11600376 TAGCATTGTAGTGTGATCCG 59 NA Drosophila melanogaster 50 Sgs7 FBgn0003377 FBtr0076095 2 1 1 70 3L 11503212 11503230 CTCATTAGCGATATTCGCA 57 11503264 11503282 ATCATCCATTGTGGTTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6279 FBgn0036125 FBtr0076235 3 1 1 138 3L 11087404 11087422 CAAGCTACTCAAGCATTGG 58 11087229 11087302 AAAGTGTTCAACCTCCTCC 59 NA Drosophila melanogaster 50 CG7888 FBgn0036116 FBtr0076200,FBtr0076199,FBtr0076201 3 3 3 130 3L 11052080 11052098 TTCATCTCCCTGTTTGGAG 58 11052191 11052268 ACAAAGTTGCTTAACACCAG 58 NA Drosophila melanogaster 50 CG6404 FBgn0027615 FBtr0076271,FBtr0076272 2 2 2 138 3L 10877848 10877866 CTAAGAAGGGATTCGTCGG 59 10877654 10877672 AACTTGTACGTCTTGACCA 58 NA DesignNoJunction Drosophila melanogaster 50 ect FBgn0000451 FBtr0076305,FBtr0076306,FBtr0076307 3 3 3 291 3L 10189411 10189429 ACAGACGGTCAACAATGAG 59 10188793 10188921 ATCCTCATCTTCATCATCGC 59 NA DesignRelaxed Drosophila melanogaster 50 Ilp2 FBgn0036046 FBtr0076329 3 1 1 96 3L 9793221 9793239 GGGTGTACTCAATTCCCTG 59 9793299 9793317 AGCCTTCATATCACAGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326 2 11 11 88 3L 9773790 9773876 CTCATGAGATCTTTGTGCA 57 9773928 9773946 CTCATACTTGATCCAACGG 57 NA Drosophila melanogaster 50 CG16711 FBgn0036032 FBtr0076397,FBtr0076396 2 2 2 60 3L 9699307 9699328 CGATGCGAATACTAAGAATCTG 59 9699348 9699367 ATTCTGTAGCAGATCATCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nwk FBgn0035966 FBtr0076532 2 1 1 122 3L 9132026 9132046 AAGATCTCATCGCAGTATCTC 59 9132220 9132238 TTTCTCATTCTCCTCGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 RpL14 FBgn0017579 FBtr0076633 2 1 1 106 3L 8594424 8594442 GATTCGTACAAACTGGTCG 58 8594512 8594762 ACCATCTACCAGAACTCTG 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG17352 FBgn0035880 FBtr0076675 2 1 5 141 3L 8346693 8346711 GAAAGGGATCAAGAACAGC 58 8346518 8346588 AGTGGGACTCACAAATAGC 59 NA Drosophila melanogaster 50 CG7194 FBgn0035868 FBtr0076714 3 1 1 60 3L 8296414 8296434 GTATTGTACTTCAAGACTGGC 58 8296374 8296394 GTCTGATTAGACCTGAATACC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8006 FBgn0035857 FBtr0076698 3 1 1 60 3L 8206425 8206443 CCAAGATCATGGAACTGTG 58 8206466 8206485 CTAAGGACTTTATGCGTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 syd FBgn0024187 FBtr0076769,FBtr0076768 1 2 2 81 3L 7919927 7921024 TCGCATAAACGATAACGAC 58 7919864 7919882 GTAACTCTTATCGCCTCGA 58 NA Drosophila melanogaster 50 CG8541 FBgn0035788 FBtr0076862 1 1 1 60 3L 7464935 7464955 TACACTCCTGCTATTAAGACG 59 7464977 7464995 GAGTAGCCTGAGTGTACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 msl-3 FBgn0002775 FBtr0076926,FBtr0076927 1 2 2 86 3L 7117435 7117511 GTTATGTCCACTGTCTGCA 59 7117367 7117385 ATACAGCAAGTGGTCATCC 59 NA Drosophila melanogaster 50 Cpr65Eb FBgn0035736 FBtr0076928 2 1 1 73 3L 7081512 7081531 GGCTCATCACAGTACTACAC 59 7081458 7081476 TGGAATCCGTTCTCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or65c FBgn0041623 FBtr0077006 3 1 1 124 3L 6321948 6321969 GGATCCAAGGATGTTTATAGAG 57 6322053 6322129 CATTGGTTAAGTATAGCGCT 57 NA Drosophila melanogaster 50 CG32409 FBgn0052409 FBtr0077030 3 1 1 96 3L 5893077 5893095 ACCAAATGGGAGAAGTTCG 59 5893154 5893230 ATGTAGGCACCCATTTATCC 59 NA Drosophila melanogaster 50 Tektin-C FBgn0035638 FBtr0077115,FBtr0113147 3 2 2 106 3L 5788690 5788708 GAAGCTCAAGGAGTTCCAG 59 5788197 5788215 CCAGATTCTCGTACGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 Dhc64C FBgn0010349 FBtr0073359 2 1 2 81 3L 4811598 4811617 AACTTCGAGAAGGTTAATCG 57 4811475 4811554 TATCAGCGTACTCGATCTG 58 NA Drosophila melanogaster 50 CG33777 FBgn0053777 FBtr0091778 1 1 1 80 3L 4554689 4554770 TACCTGTCCCTTTAATGACG 59 4554628 4554648 GGGAGTACTGAAGTTACTTGG 59 NA Drosophila melanogaster 50 DopEcR FBgn0035538 FBtr0100185,FBtr0100186,FBtr0073337 2 3 3 60 3L 4379449 4379467 AAACTGAGCAATGTCAAGG 58 4371891 4379425 CTAATTGTGCGCATCTGAG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 kst FBgn0004167 FBtr0112840,FBtr0073070,FBtr0073072,FBtr0073071 2 4 4 81 3L 3365741 3365818 AGTCCATGAAGCAACAGTC 59 3365861 3365881 GAGTTACGAGAACTAACTGGT 59 NA Drosophila melanogaster 50 CG17723 FBgn0035432 FBtr0073057,FBtr0073055,FBtr0073058,FBtr0073054,FBtr0073056 1 5 5 85 3L 3312395 3312526 CATATTAGGTGCCGTAACCT 59 3312574 3312592 GTAGAGTGGATACCCTCGT 59 NA Drosophila melanogaster 50 pfk FBgn0035405 FBtr0073028,FBtr0073027 2 2 2 60 3L 3160952 3160971 AATCACAAATGATCGACGAG 58 3160991 3161012 CCAGCTTCTAGTTCCATAAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Shab FBgn0003383 FBtr0072975,FBtr0112829 2 2 4 85 3L 2941551 2941572 CTCCTTCCATCATATCAATCTG 58 2941618 2942577 TTGTTTGCTTTCCTGTGTC 58 NA DesignRelaxed Drosophila melanogaster 50 Shab FBgn0003383 FBtr0072974,FBtr0110776,FBtr0072975 1 3 4 67 3L 2925425 2925443 GAAGTATCTGTGGGAGCTC 59 2925474 2940796 ATATCACTGCGATAACCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG1146 FBgn0035346 FBtr0072921,FBtr0072922,FBtr0072923 2 3 3 69 3L 2491992 2492010 CTACTCCATCACCGATCTC 58 2492043 2492061 TTCGTTGATGTACGTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1887 FBgn0035290 FBtr0113125,FBtr0072859,FBtr0113124 2 3 3 61 3L 1894438 1894614 AATACAACCGAAACTTGGAG 58 1894396 1894417 CTTTAAGATTCAGCTGTATCCG 58 NA DesignRelaxed Drosophila melanogaster 50 metl FBgn0035247 FBtr0072813,FBtr0072814 1 2 2 60 3L 1638099 1638117 GACTGCAAGTTAATCGCTG 59 1638057 1638076 AACTTTGTCTGAATCCACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LysX FBgn0004431 FBtr0072637 3 1 1 78 3L 1195084 1195102 ATGGATCCAACGACTATGG 58 1195024 1195042 TTGTGGGAGAACTTTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RhoGEF3 FBgn0035128 FBtr0089654 3 1 4 110 3L 298098 298116 GCTTGTCATGAAGGATCCA 59 299009 300905 ATTTGCTGTGACAAACTCG 58 NA Drosophila melanogaster 50 CG34140 FBgn0083976 FBtr0110975 2 1 1 60 3L 183692 183766 CTTTCTGCAATCTTCTAGCT 57 183651 183669 GATAAACATTCGAGCTGCA 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Pk61C FBgn0020386 FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466 1 8 8 86 3L 142804 142822 ATATCGCGACTGCTTAGTG 59 142872 142953 GTCGAAAGAGTTCTTTGCG 59 NA Drosophila melanogaster 50 CG4589 FBgn0019886 FBtr0072347,FBtr0072348,FBtr0072349 1 3 3 81 2R 20398428 20398446 CATCGAAGCTGTACTGGAG 59 20398305 20398383 GGATTCCAACACCTTACGA 59 NA Drosophila melanogaster 50 DnaJ-60 FBgn0020129 FBtr0072278,FBtr0072279 1 2 2 140 2R 20046224 20046242 AACTACGATCCCAATCCAG 58 20046041 20046120 TTTAAAGGACGACCTGACG 59 NA Drosophila melanogaster 50 CG13559 FBgn0034870 FBtr0072057 2 1 1 68 2R 19391055 19391073 TAGTCTTGTTCACCACCTG 58 19391105 19391123 TCTCGTTGAAACAGTCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30190 FBgn0050190 FBtr0113362,FBtr0113363 3 2 3 122 2R 18817732 18817750 CAGGATGACATCAGCTCTG 59 18817835 18819049 CATGGATTTGTCCTCATTGC 59 NA Nonspecific Drosophila melanogaster 50 CG3746 FBgn0034755 FBtr0071929 2 1 1 63 2R 18537160 18537178 GCCAGGAATATTATTGCCA 57 18537115 18537133 CATGATCATCGATGAAGGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2852 FBgn0034753 FBtr0114458,FBtr0071933 1 2 2 60 2R 18533800 18533819 GTCGCTTGAGGAATAAACTG 58 18533759 18533778 GGATAAGAACAGCTTCATCG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 RpS16 FBgn0034743 FBtr0071855 3 1 1 155 2R 18494544 18495270 TACCAGAAATACGTCGATGAG 59 18495387 18495405 TTAACGGTACGACTTCTGG 59 NA Drosophila melanogaster 50 CG10384 FBgn0034731 FBtr0071831 3 1 1 60 2R 18359006 18359024 ATGTTTGCGTAGTTGATGC 59 18359047 18359066 ATCGGTATAGCCTTACTACG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG13506 FBgn0034723 FBtr0071822 3 1 1 81 2R 18274022 18278494 GACAACTATACGTGAGTTGTG 58 18278537 18278555 TACTCATACTCGTCGTCCT 59 NA Drosophila melanogaster 50 Vrp1 FBgn0034695 FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104 2 7 7 87 2R 17998431 17998841 CAACCTAAATATCTCGTTAGGC 58 17998365 17998384 TAGACTGCTGTTTAAGGACG 59 NA Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089704,FBtr0089707,FBtr0089706,FBtr0089711,FBtr0089710,FBtr0089705,FBtr0089709,FBtr0089703,FBtr0089708 3 9 9 94 2R 17398737 17398915 TTTGCCAGAGGATTACGTC 59 17398972 17398991 AACCAATCACCGACTTTAGG 59 NA Drosophila melanogaster 50 CG13430 FBgn0034518 FBtr0100496 2 1 2 69 2R 16439265 16439284 ATGCTGAGACTTTAATCCCT 58 16439215 16439233 TTTGGTGCATAATCTGTGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 betaTub56D FBgn0003887 FBtr0086536,FBtr0086538,FBtr0086539,FBtr0086537 2 4 4 67 2R 15335671 15335690 CTCTACGATATCTGCTTCCG 59 15335623 15335641 ACAAGATGGTTCAGGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cora FBgn0010434 FBtr0086507,FBtr0086509 1 2 4 182 2R 15124300 15124318 TTCAATAGGACTCTGTCCG 58 15124561 15125668 CTTATCAGCATCCTTCTCCT 58 NA Drosophila melanogaster 50 CG15117 FBgn0034417 FBtr0086594,FBtr0100129,FBtr0086593 1 3 3 80 2R 15010463 15010482 ATAAACGCTACAACAAACCC 58 15010303 15010421 CATAAGCAGGTTGCATATGC 59 NA Drosophila melanogaster 50 slim FBgn0026173 FBtr0086692,FBtr0086693 1 2 2 157 2R 14331579 14331597 TGAAACGTATCCCGATCAG 59 14331858 14331876 AATATGTGGAGAAGTCGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18540 FBgn0034326 FBtr0086762 2 1 1 61 2R 14187100 14187121 CTTCTGGAATATTGATGTGGAC 58 14187203 14187222 AGTAACTGCTCAGAATACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34005 FBgn0054005 FBtr0100060 2 1 1 134 2R 13935949 13935967 TCAGGAGGAGATTCGAGAG 59 13936121 13936139 ATACTGTAGACATTCGCCA 58 NA DesignNoJunction Drosophila melanogaster 50 CG10936 FBgn0034253 FBtr0086894,FBtr0086895 1 2 2 81 2R 13494101 13494119 ACCAGAGCTACTTGATCAC 58 13493968 13494058 GGAATAAACTTCGTTGAGCTG 59 NA Drosophila melanogaster 50 robl FBgn0024196 FBtr0086920 1 1 1 193 2R 13344213 13344299 CAATGAAGGTATTCCGGTC 57 13344456 13344474 TCAGGATGAAGTCCTTGTC 58 NA Drosophila melanogaster 50 CG15609 FBgn0034180 FBtr0114626,FBtr0087019,FBtr0114627 1 3 6 81 2R 12900834 12900852 AGCAACTGGAGCATATGAC 59 12900261 12900792 TCTTCTGATAACGAAGGTACAC 59 NA Drosophila melanogaster 50 CG30461 FBgn0050461 FBtr0100249,FBtr0100251,FBtr0100250,FBtr0100252 1 4 4 60 2R 12883879 12883899 GCAGCTTATTCTCAGTAATCG 58 12883785 12883803 TTTCTTGATTCGCGAACAG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG5267 FBgn0034154 FBtr0087021 2 1 1 60 2R 12642917 12642937 ATAGGTGAAGAAATAGCCCTC 58 12642958 12642977 GCTGCTTGATATACTTCTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8291 FBgn0034049 FBtr0087298,FBtr0087299,FBtr0087300 3 3 3 90 2R 11812694 11812776 GGATACAGAACATCTTTGCTG 59 11812624 11812642 GTAAGAAACGTTTCCTGCG 59 NA Drosophila melanogaster 50 CG8187 FBgn0034027 FBtr0087355 3 1 1 101 2R 11428033 11428051 AGTTTCAGACACAAACTGG 57 11427897 11427971 CATGTACTCCAGTCATATTGAG 58 NA Drosophila melanogaster 50 mus210 FBgn0004698 FBtr0087373,FBtr0087374 2 2 3 111 2R 11200223 11200241 AAGTCAACGCGAATAAAGC 59 11200316 11202134 ATAGATCTGCATCTGCCAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG10151 FBgn0033960 FBtr0087471,FBtr0087472,FBtr0087473 3 3 3 60 2R 10641561 10641579 AAACTACATCAGAGCCTGC 59 10641519 10641537 CCTTCTCCAGTTGAATGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12869 FBgn0033943 FBtr0087496 2 1 1 164 2R 10480310 10480328 CGATCCTGATTCACCTGTC 59 10480525 10480543 ATCGTAGTTCGTTGATGGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG13333 FBgn0033855 FBtr0087676 1 1 1 63 2R 9443698 9443716 CAACAACTACGACAACCAC 58 9443743 9443761 ATGTTCAGGAGATCAGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835 3 6 8 110 2R 8504608 8504626 CCTGCATATTTACCCACTG 57 8504697 8505312 GACGTCTACCATTCTAAATCTG 58 NA Drosophila melanogaster 50 Drip FBgn0015872 FBtr0088141,FBtr0088142 3 2 2 186 2R 7300292 7300311 AGTATCCTCCTTTGATCCCT 59 7300068 7300143 GCTCAGTTTGATTGCACAC 59 NA Nonspecific Drosophila melanogaster 50 CG9027 FBgn0033631 FBtr0089939,FBtr0089938,FBtr0100658,FBtr0110897 3 4 4 193 2R 7269622 7269641 AATCGGATAATACCCAGGTC 58 7269385 7269466 ACCGTGATCAACCTTATCG 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 3 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421093 TAGTAAGGTAGCAAAGTAGGGA 59 NA Drosophila melanogaster 50 G-oalpha47A FBgn0001122 FBtr0088271,FBtr0088266,FBtr0088267,FBtr0088269,FBtr0088272,FBtr0088264,FBtr0088268,FBtr0088270,FBtr0088265 2 9 9 198 2R 6348939 6349026 GAATACACAGGTGGACAGG 59 6349188 6349206 CTTAGTACAGTCCACAGCC 59 NA Drosophila melanogaster 50 Or46a FBgn0026388 FBtr0088331 1 1 2 60 2R 6028875 6028896 TGTGCTGAATATAACCTACGAC 59 6028915 6028935 CTGAACCTTCAAGAAACAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1623 FBgn0033448 FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487 3 4 4 70 2R 5716115 5716133 GAACTACGAACCCAAGACC 59 5716063 5716082 TATCCGGATACTTGTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ced-6 FBgn0029092 FBtr0088550,FBtr0088548,FBtr0088549 2 3 3 133 2R 5324291 5324933 CTAGTCAAGTTCTTTGGTAACC 58 5324179 5324197 TTCTTGAACTTCTCCTGGG 58 NA Drosophila melanogaster 50 CG8046 FBgn0033388 FBtr0088620 2 1 2 154 2R 5051972 5052051 GAAACAAAGAGAATTGAGGAGC 59 5051839 5051857 AAAGAGCACATGAGAAGGG 59 NA Drosophila melanogaster 50 Mys45A FBgn0033379 FBtr0088628 1 1 1 60 2R 5000720 5000739 ATGGAATGATTCTAAGACGG 57 5000679 5000698 TGTTACCTTAGAGAAGCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 3 9 9 95 2R 4568140 4568158 ATGAGCAGATCAAGACCTG 59 4568217 4568298 TATCACGGTAGTCCATGAC 58 NA Drosophila melanogaster 50 Dgk FBgn0085390 FBtr0112581,FBtr0112580 1 2 4 80 2R 3738267 3738287 CATTGTTAACCAGATGATGGC 59 3736487 3738226 ATCATCTCTTGCAGTATCGG 59 NA Drosophila melanogaster 50 CG12826 FBgn0033207 FBtr0088943 1 1 1 90 2R 3558415 3558433 ATTGTACTCGTGGATCTGC 59 3558343 3558361 TTCGTAGCTATCCAAGTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpld FBgn0015930 FBtr0088985,FBtr0088987,FBtr0088986 2 3 3 142 2R 3371482 3371500 TAGTGTTCGACAACCATGG 59 3371296 3371378 GGAAAGAATGTCGTTGATGTC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111093,FBtr0111073 3 2 60 111 2R 3236477 3245110 AATGCCGTTCTTTAGATGG 57 3236384 3236403 TGCGTCCTTAATAATGAGAG 57 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111064,FBtr0111057,FBtr0111100 3 3 60 85 2R 3247004 3247022 AGCACCTTAAGGGAAAGAG 58 3236471 3246958 CTTGTACCATCTAAAGAAAGGC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111068 2 1 60 98 2R 3245024 3249236 ATTGGTCATCACAGAACCC 59 3244944 3244962 ATAGCTAGACTGCGATCCT 59 NA Drosophila melanogaster 50 CG30385 FBgn0050385 FBtr0089047 3 1 1 60 2R 3069405 3069424 CAATCTACAGTGACGATCCA 59 3069446 3069465 TAATTCCATTGATGCGAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 geminin FBgn0033081 FBtr0086147 2 1 1 66 2R 2543692 2543710 TACATCCAAGTCGAGACAG 58 2543644 2543662 GTTTCAGGGTCTGTCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34211 FBgn0085240 FBtr0112404 1 1 1 60 2R 1934727 1934745 GGATATCTCAGTGCTGTGG 59 1934769 1934787 CACCAAGAAGATGAACAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11163 FBgn0025693 FBtr0086054,FBtr0086056,FBtr0086055,FBtr0086053 2 4 4 80 2R 1662572 1662645 TGCATCTCGTTACAGACTC 59 1662510 1662529 TATATCTTGGGCTGGATACG 58 NA Drosophila melanogaster 50 cta FBgn0000384 FBtr0111126 1 1 1 86 2L 22883614 22883690 CGTTATAAGAGGTATGCAAGTC 58 22883737 22883755 TAAGCATCCTGTTCTCTGC 59 NA Drosophila melanogaster 50 lt FBgn0002566 FBtr0111123,FBtr0111125,FBtr0111124 2 3 3 80 2L 22832738 22832817 CATAGTTGACTACTTTAGCCC 57 22832858 22832877 AGTGATTGTCGAAGATTTGG 58 NA Drosophila melanogaster 50 CG15219 FBgn0040519 FBtr0085944,FBtr0085945 1 2 2 62 2L 22105128 22105146 TTCGTGAGATGAACTCTCG 59 22105020 22105038 TTATAGTAGTCGCCTTGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31600 FBgn0051600 FBtr0085949 1 1 1 92 2L 21914959 21915026 TTGTTCTCGGGCTTATACC 59 21914885 21914903 TATAGCTCCTGTTCATGGC 58 NA Drosophila melanogaster 50 CG10947 FBgn0032857 FBtr0081368,FBtr0081369,FBtr0081370 1 3 3 60 2L 20387006 20387025 GGAGAACTGGTACAAATACC 57 20386965 20386983 GATGTTCACCGAGTACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10659 FBgn0032839 FBtr0081350 1 1 1 60 2L 20025651 20025669 AGTCTACTAGCGAGAACGT 59 20025609 20025627 GACAGGTGATACTCATCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10337 FBgn0032805 FBtr0081276 3 1 1 86 2L 19546210 19546229 ACTTTAAGAGCAACCATGCT 59 19546077 19546095 TGAAATACAGCGGAAGACC 59 NA DesignNoJunction Drosophila melanogaster 50 brat FBgn0010300 FBtr0081159,FBtr0081158 1 2 3 124 2L 19166350 19168104 GCAGTAAAGCTGTTACTCC 58 19168192 19168210 TACGATTCAATCGAGTTCG 57 NA InUTR Drosophila melanogaster 50 CG10470 FBgn0032746 FBtr0081146 3 1 1 124 2L 19049292 19049310 ACATGGGTGATGGTTTACC 59 19049455 19049473 TTCTTTACCGCTTTGTCCA 59 NA DesignNoJunction Drosophila melanogaster 50 ninaD FBgn0002939 FBtr0081031 2 1 1 83 2L 18083180 18083262 AGAACTTAGGTTGGCACTG 59 18083309 18083327 GCTATAAGAATGCAGCCCA 59 NA Drosophila melanogaster 50 Ugt36Bb FBgn0040261 FBtr0080910 3 1 1 60 2L 16797770 16797788 CTATTCATAACCCATGCGG 58 16797810 16797830 TGGGAACTCCATGATATTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080898,FBtr0080903,FBtr0080900 3 3 13 99 2L 16779120 16779138 CAAGGGTATTGAGGATCCC 59 16779199 16780558 GAAGAACACCTTTGTGTTACC 59 NA Drosophila melanogaster 50 CG5968 FBgn0032588 FBtr0080872 2 1 1 60 2L 16549405 16549425 CAGGACATTCCTAGTTCATCC 59 16549365 16549383 TTCGCTTAATCAGCTTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5861 FBgn0015338 FBtr0080850 1 1 1 75 2L 16306694 16306712 CGAGTTCAACTTCTTTGCG 59 16306567 16306585 CAAGATTAGGGCGAATCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG4587 FBgn0028863 FBtr0112944,FBtr0112943 1 2 2 80 2L 15650698 15650779 TTCGCGTAACAATGTTACC 58 15650636 15650657 CTATTGTACTCACAATACACCC 58 NA Drosophila melanogaster 50 CG31828 FBgn0051828 FBtr0080742 1 1 1 84 2L 15370033 15370321 CAATTTGATGTGCAGGACTG 59 15369968 15369986 TCTATTTGGCATCCTGGTG 59 NA Nonspecific Drosophila melanogaster 50 CG33678 FBgn0053678 FBtr0091658 2 1 1 60 2L 15071256 15071274 GAAATGCATCAAGTGACCA 58 15071298 15071316 TTTATGGGAGGCAGTAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31840 FBgn0051840 FBtr0080607 3 1 1 62 2L 14023998 14024016 CACGAGTATGTACATCGGT 58 14023954 14023972 GTTTGAATGAGTTGCAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34003 FBgn0054003 FBtr0100058 1 1 1 79 2L 13967623 13967643 CGATGGTTATGTGAATAAGGG 58 13967564 13967582 ACAATCCATTGGAGCAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7916 FBgn0028534 FBtr0080549 1 1 1 130 2L 13847073 13847091 TACACCAATGCTGATCTCC 59 13847240 13847258 CTAAAGGTGTAGCTGACCT 58 NA DesignNoJunction Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090021,FBtr0090013,FBtr0090027 3 3 17 91 2L 12731059 12737970 TCTTTATGGTTCTGGCTACC 59 12738024 12738042 GAAGTAGTACAGGAAGGCG 59 NA Drosophila melanogaster 50 bru-2 FBgn0043904 FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351 2 4 4 138 2L 12385726 12389193 ATTGGAGCTATAAAGGCCC 59 12389295 12389313 TATTGATGCCACAGAATGC 58 NA Drosophila melanogaster 50 Ced-12 FBgn0032409 FBtr0080330 1 1 1 90 2L 12099897 12099917 GCGATTGTTAAGCTCAAAGAG 59 12099969 12100050 AATGTGTACCTTCCACCAG 59 NA Drosophila melanogaster 50 CG14935 FBgn0032382 FBtr0080277,FBtr0080276 1 2 2 95 2L 11852014 11852090 CTTTAAGCGGTCCTATCCC 59 11852148 11852167 TGGCTAAGAAACTCTGAGAG 58 NA Drosophila melanogaster 50 crol FBgn0020309 FBtr0080260,FBtr0080263,FBtr0080261 2 3 4 151 2L 11797737 11797844 GTGAAACCGATCATAATTCCC 59 11797606 11797624 GCATTATGTGAGATGAGCG 58 NA Drosophila melanogaster 50 CG4788 FBgn0032354 FBtr0080202 2 1 1 60 2L 11179474 11179492 TGGACAGCTAGTATACCGA 59 11179513 11179534 GATCACATAGTTGATGACATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4738 FBgn0032347 FBtr0080199 1 1 1 80 2L 11126834 11126908 CATCAATAAGATGCTTTGGC 57 11126951 11126969 ACAATGATGTGATGACAGG 57 NA Drosophila melanogaster 50 CG17127 FBgn0032299 FBtr0080136 2 1 1 60 2L 10771192 10771212 ATCAATCTCTTCGAGATCCTC 58 10771234 10771252 ACTGCAGGTTGTTTATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5096 FBgn0032235 FBtr0080006,FBtr0113034 3 2 2 130 2L 10383793 10383876 TGGCGACAATGTATTTCCA 59 10384031 10384051 TGTCGGACAATATCAGTTCAG 59 NA Drosophila melanogaster 50 CG5390 FBgn0032213 FBtr0080064 3 1 1 80 2L 10304764 10304839 AGTAGCATTGTTGTGAGAG 57 10304702 10304720 CTTGACATATCGGTCTTCG 57 NA Drosophila melanogaster 50 CG13138 FBgn0032211 FBtr0080066,FBtr0080067 1 2 2 60 2L 10301076 10301094 GTACCGAAACCGTATCCAG 59 10301034 10301052 CTGGCACCTTTATTTCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13121 FBgn0032145 FBtr0079922 1 1 1 60 2L 9770968 9770986 TGGAGGAGTCCTACTATCG 59 9770926 9770945 CCATTGATGTAACTCTGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32985 FBgn0052985 FBtr0079757 3 1 1 91 2L 8963274 8963358 ATGGGCTACAATAAGGTCG 59 8963413 8963431 CAAATTTGAGTCTCTGCCG 59 NA Drosophila melanogaster 50 CG13095 FBgn0032049 FBtr0079701 2 1 1 60 2L 8495679 8495697 CGTTCTACAACATGGTGTC 58 8495637 8495656 GCCAGATAGAACGAGAAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13384 FBgn0032036 FBtr0079657,FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079655,FBtr0079658 1 6 6 81 2L 8387350 8387368 ATTACCCTAAATCTGCCGC 59 8387693 8387711 TATACGAGAGGAAGATGGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG7840 FBgn0032014 FBtr0079598 1 1 1 60 2L 8306565 8306583 GCAATCAAACGATCAATGC 58 8306606 8306625 TATTCCCTGAATGTTTCCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567 2 8 9 165 2L 8089727 8105702 CAATCACTTGATAAGCTGGTG 59 8106859 8106877 GAGAAGGTACATCCGTCAC 59 NA Drosophila melanogaster 50 CG7154 FBgn0031947 FBtr0079488 1 1 1 93 2L 7783885 7783903 TTTAATAGGCAGCAGTCCC 59 7784013 7784031 TGTAAGGGCATTAAGGGAG 58 NA DesignNoJunction Drosophila melanogaster 50 Slob FBgn0024290 FBtr0079517,FBtr0079519,FBtr0100158,FBtr0079518 2 4 4 80 2L 7649009 7649027 TGAGGACTTAGTCCTTTGC 58 7648879 7648968 GGCTTAATTGTACTGAAACAGG 59 NA Drosophila melanogaster 50 wg FBgn0004009 FBtr0079433,FBtr0079432 2 2 2 99 2L 7313107 7313125 ATGAATCTGCACAACAACG 59 7314366 7314384 TCTTCACTGTACACGATCC 58 NA DesignNoJunction Drosophila melanogaster 50 SP1070 FBgn0031879 FBtr0079354 3 1 1 90 2L 6983241 6983324 AGTGTCAGGAGGTCTACTG 59 6983169 6983187 ATTGCTATACCGCGATAGG 59 NA Drosophila melanogaster 50 Tsp FBgn0031850 FBtr0114489,FBtr0114488,FBtr0079312 2 3 6 112 2L 6688877 6688895 CTACTCCGTGGATTATCGC 59 6688725 6688802 ATCTGTAGGAACCAATCTCG 58 NA Drosophila melanogaster 50 CG11050 FBgn0031836 FBtr0079292,FBtr0079293,FBtr0079291 3 3 3 105 2L 6616056 6616075 ATCCAAAGACGATAAGCGAG 59 6616142 6616222 CTCGTATTCCTCAAACAGCT 59 NA Drosophila melanogaster 50 mmy FBgn0086705 FBtr0079268,FBtr0079269 2 2 2 184 2L 6471423 6471441 AGCTAATCTCCATTGCCAG 59 6469889 6469907 GAACAGGGTCTTTCGAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9498 FBgn0031801 FBtr0079282 2 1 1 115 2L 6350392 6350410 TCATTCTTCAGCAACTGGG 59 6350231 6350249 CTTCATCAGGATGTCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Kr-h1 FBgn0028420 FBtr0079194,FBtr0079195 1 2 2 118 2L 6095044 6095062 GCTAACTACGATGACACCC 59 6095143 6095246 AGAGCGGATTCATATTTGGG 59 NA Drosophila melanogaster 50 CG8680 FBgn0031684 FBtr0079025 2 1 1 102 2L 5099666 5099748 TACATCAACCTGGACAAACC 59 5099583 5099601 ATTGGCCACTATGGTTTCC 59 NA Nonspecific, InUTR Drosophila melanogaster 50 qtc FBgn0028572 FBtr0079014,FBtr0079012,FBtr0079013,FBtr0079015,FBtr0100260 2 5 7 99 2L 5069212 5070107 CGCGTAAGACCATTTATCG 58 5070169 5070188 TAGAAGATAGCGCTCTTGAG 58 NA Drosophila melanogaster 50 CG3792 FBgn0031662 FBtr0078997 2 1 1 60 2L 4978289 4978308 CACTTTCATTGCCTCTACCT 59 4978331 4978349 CCAGTAGTAGATCAGCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2837 FBgn0031646 FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403 1 4 4 164 2L 4904902 4904923 GTTTACTCCAATATACCACCGA 59 4904700 4904721 CTTGTTGAACGATTGATCATCC 59 NA DesignNoJunction Drosophila melanogaster 50 Taf12L FBgn0031623 FBtr0077420 3 1 1 60 2L 4701443 4701461 GTAACATGGAACCTTGGTC 58 4701401 4701419 TTATCCGACGATTTATCGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)k05819 FBgn0022153 FBtr0077433,FBtr0077432 3 2 2 87 2L 4396832 4396851 AAACAGATTGGATTCACCGA 59 4396901 4396981 CAACATCAGGTTGCAAGTG 59 NA Drosophila melanogaster 50 CG3652 FBgn0031600 FBtr0077460 1 1 1 137 2L 4393372 4393390 CATACTACAAGGCTCCTCC 58 4393191 4393271 AAGAATGAGATATTGCCGC 57 NA Drosophila melanogaster 50 Traf1 FBgn0026319 FBtr0112925 2 1 3 129 2L 4372532 4378918 AACAGATTATCTATCCCGGTC 58 4379009 4379027 TTACAGGCGTTGAGATGTC 59 NA Drosophila melanogaster 50 capu FBgn0000256 FBtr0077511,FBtr0077513,FBtr0077512,FBtr0077510 3 4 4 86 2L 3879058 3884044 AGTTCGAAGGTCAAATGCT 59 3878990 3879009 ATTCCTGATTAGCATCACCG 59 NA Drosophila melanogaster 50 CG34394 FBgn0085423 FBtr0112638,FBtr0112641,FBtr0112639 2 3 4 104 2L 3363376 3363396 CGAACTGTATTCCATAGACGT 59 3363181 3363310 TGATCATCGACAGTTCTGG 59 NA Drosophila melanogaster 50 Prx6005 FBgn0031479 FBtr0077684 2 1 1 161 2L 2877381 2877621 CGCAACTTTGATGAAATCCT 59 2877239 2877257 GGTTTCGATACCATCAGGA 58 NA Drosophila melanogaster 50 Or23a FBgn0026395 FBtr0077698 2 1 1 60 2L 2654762 2654782 TCCTGAGAATCTCTGAAATCG 59 2654804 2654822 AGATCCTGTTCGTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpp FBgn0000490 FBtr0077774,FBtr0077772,FBtr0077775,FBtr0077771,FBtr0077773 2 5 5 61 2L 2458369 2458387 GACCACTTTAACTCGACCA 59 2458411 2458430 CCGGGATTCATATTGTTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab5 FBgn0014010 FBtr0077793,FBtr0077798,FBtr0077796,FBtr0077794,FBtr0077797,FBtr0077795 3 6 6 203 2L 2360797 2360985 AACTGCATAAACAAGCCTC 58 2360549 2360569 CGTTCTTAGGTAGTTTCTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5565 FBgn0031335 FBtr0077944 3 1 1 60 2L 1355719 1355739 CACTCATGTCATCTTTGACTG 58 1355607 1355625 TTTGAGGTAGATGCCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5118 FBgn0031317 FBtr0077979 3 1 1 98 2L 1171783 1171802 TTTATAAGCGGAAACACCGA 59 1171634 1171722 GTGAATGGGTAGCAATCCT 59 NA Drosophila melanogaster 50 CG15880 FBgn0031283 FBtr0078040 1 1 1 60 2L 817140 817159 GAGTTCATCTCCTGTGAGTG 59 817099 817119 GGTAGAAGTCAAAGTAGACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hsp60B FBgn0011244 FBtr0078000 1 1 1 60 2L 729212 729230 CGCCCTTGTAATGATATCC 57 729251 729272 CAGACCTTTAACTATTTGCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13692 FBgn0031254 FBtr0078057 3 1 1 60 2L 421873 421891 AATCCATCGATGAGACCAC 59 421915 421933 TGGATTCGGTAAATCCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL10 FBgn0031231 FBtr0078124 1 1 1 60 2L 204369 204389 GAAGAATACTCGATACGAAGC 58 204410 204429 GAAGACGATGCAATGATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR33963 FBgn0053963 FBtr0100004 2 1 1 60 X 12553621 12553640 TGTTTCTCGTGTATCTTGTG 57 12553663 12553681 GGGAATGTAAGTTGACCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 run FBgn0003300 FBtr0077279 2 1 1 249 X 20566412 20566839 GCCAAGAAGTAAGCAAAGC 59 20567052 20567070 ATACTCAGATGGCTGAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp19c FBgn0031111 FBtr0077326 1 1 2 281 X 20289740 20289758 TAATGACGATAGTGGTCGC 59 20289411 20289496 TCAACTTGATCTTCTTGAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15460 FBgn0031104 FBtr0113006 2 1 1 106 X 20261538 20261556 CTCGATCTTGGACATGGAG 59 20261394 20261468 TCTTTACGTCCAGCATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14218 FBgn0031031 FBtr0074770 2 1 1 77 X 19474950 19475030 TGATACCTTCTTTAGGTCGC 59 19474892 19474910 GAGTCAACTAAGTCTCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32495 FBgn0052495 FBtr0089800 2 1 3 159 X 17798009 17798027 ACTATATGGCACACGTGTC 59 17798678 17798841 TTATCCGGCATATTGTGCA 59 NA Drosophila melanogaster 50 CG4239 FBgn0030745 FBtr0074270,FBtr0074269,FBtr0074268 1 3 3 243 X 16281095 16281113 AATGTTTCCGTTCTTCGAC 58 16281320 16281395 GTAGAAGACGACGTACCAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 caz FBgn0011571 FBtr0074217,FBtr0074218 1 2 2 117 X 16186669 16186931 TGCAATAGATGTAAGACTCCC 59 16187010 16187028 ATCCACGATCATTTCCTCG 59 NA Drosophila melanogaster 50 CG32603 FBgn0052603 FBtr0073894 1 1 1 162 X 14078631 14078754 GAAATTCTTCGCTATCCTCTC 58 14078878 14078896 AACATAGGTCTCAGAGGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17255 FBgn0030205 FBtr0071461,FBtr0071460 3 2 2 61 X 10365931 10365952 CACAGCGTTAGATATAAATCGC 59 10365795 10365813 CAGATGGTTCACTTGACTC 57 NA DesignNoJunction Drosophila melanogaster 50 Marf FBgn0029870 FBtr0070909,FBtr0070910,FBtr0070908 3 3 3 104 X 6262082 6262568 CAGGAATCGGTTAAGTCTC 57 6262636 6262654 AACGAAGAATACCCTTTCG 57 NA Drosophila melanogaster 50 CG15773 FBgn0029795 FBtr0070806 1 1 1 192 X 5627566 5627584 CATGGGATTCTATCCCACC 59 5627740 5627957 TACAAGGGTATCTTGCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 torp4a FBgn0025615 FBtr0070690 1 1 1 62 X 4543647 4543665 ATACATATTGCCGGTTTGC 58 4543545 4543621 ATTCATCTATTCTCGCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32774 FBgn0052774 FBtr0070662 1 1 1 95 X 4139675 4139790 CTTTGTTTAACTGTGGGCC 59 4139598 4139616 ATTGTTCAAGCTGGTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3939 FBgn0040396 FBtr0070508 3 1 1 67 X 3069646 3069664 GAGAAAGACAAGGACGGAC 59 3069969 3069988 GCACTCATGATAGTTTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF2B-beta FBgn0024996 FBtr0070479 3 1 1 72 X 2599945 2600031 TTCATATCCAACACCGGTG 59 2600066 2600085 CTTCGGGATGATACAGTTCC 59 NA DesignRelaxed Drosophila melanogaster 50 TfIIA-S-2 FBgn0040338 FBtr0070184 1 1 1 210 X 905422 905521 GATGAGATGATGGAGAGGG 58 905230 905248 TCAAGGAATGCTGATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12071 FBgn0039808 FBtr0085716,FBtr0085717 2 2 2 161 3R 26705208 26705226 CAACTGACCTACAACATCC 57 26704954 26705083 CTTGTTGGTGGACTTTGAG 58 NA Drosophila melanogaster 50 CG7829 FBgn0039703 FBtr0085531 3 1 2 66 3R 25643104 25643122 CCATGGACTATGACATCGG 59 25643005 25643077 GCCTTTACCTTTCTAGATAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ALiX FBgn0086346 FBtr0085241 1 1 1 107 3R 23522541 23522618 TCCTGGTAACTATCAGTACCA 59 23522454 23522472 TTCTGGTTGGGATATCCAC 58 NA Drosophila melanogaster 50 CG33494 FBgn0053494 FBtr0089607 2 1 1 118 3R 21320015 21320033 ATCCTCTTATGGTCGACAG 58 21319779 21319798 TTGTCTGAGTTTCTTATCGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG31184 FBgn0051184 FBtr0084505 2 1 1 97 3R 19822421 19822499 TCTTCACGCCTTTGATCAG 59 19822560 19822578 ACACCTCCTCATAGGTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31141 FBgn0051141 FBtr0084490 2 1 1 95 3R 19749235 19749255 CGAGAACCTTATAATCTGCGA 59 19749312 19749389 CATGAAGTAGTATCCGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31281 FBgn0051281 FBtr0084339 2 1 1 105 3R 18792274 18792360 GCTAACATGAAGGACTCCC 59 18792429 18792447 GAGAAATTCTCTTCGACCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5558 FBgn0038684 FBtr0083748 2 1 2 188 3R 14986897 14987089 AAAGAAAGAACACTTGGCG 58 14986727 14986745 CAGTAGTTGGACCACTTGG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14302 FBgn0038647 FBtr0083673 2 1 1 199 3R 14558429 14558521 TGAAATTCTTCAACCTGCTG 58 14558682 14558701 ATAGATGGTCGACGTTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14306 FBgn0038628 FBtr0113245 1 1 1 82 3R 14418092 14418110 ATGAAGTGTTACCGATCCC 59 14418155 14418464 TTAATCTCGATTAGCTTCCG 57 NA DesignNoJunction Drosophila melanogaster 50 koko FBgn0051232 FBtr0083625 3 1 5 156 3R 14225882 14229247 TATCATTCTGGAGTTCGGC 59 14229433 14229451 CAAAGATGTACATCGGCAC 58 NA Drosophila melanogaster 50 Hmx FBgn0085448 FBtr0112715 3 1 1 140 3R 13393280 13393298 ACCAGAACTGTATTCTCGC 59 13393402 13393420 CTGGAACCAGATCTTCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31267 FBgn0051267 FBtr0083404 1 1 1 65 3R 12960086 12960104 GAAGAATCCGATGTCCTGG 59 12960133 12960317 AAAGTGGTTACCATAGGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083351,FBtr0083347 1 2 6 80 3R 12550978 12550996 GGCATATCAACAGACATGG 58 12484785 12536291 ACCATTTGTACCTAGCCAG 58 NA Drosophila melanogaster 50 CG12419 FBgn0037769 FBtr0082148 3 1 1 108 3R 5807763 5807782 AATGAATTACTACGTGGAGC 57 5807853 5807871 CATCACTGAATCCTCGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16905 FBgn0037762 FBtr0082144 3 1 1 176 3R 5639947 5639965 ATCCATGGATAACCATGGG 58 5640104 5640188 CAAACAGGAAGTGAACTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16905 FBgn0037762 FBtr0082144 1 1 1 175 3R 5639947 5639965 ATCCATGGATAACCATGGG 58 5640104 5640187 AAACAGGAAGTGAACTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33779 FBgn0053779 FBtr0091780 2 1 1 63 3R 4030429 4030501 AAACTTGCGCATTGATTCC 59 4030384 4030402 GTGCCATTTGAGGTAATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dsx FBgn0000504 FBtr0081760,FBtr0081761 2 2 3 75 3R 3761527 3761547 GTGATATTAAAGGACGCAGAC 58 3761358 3761490 CATTCACAACGTATTGGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2846 FBgn0014930 FBtr0081763 1 1 1 95 3R 3738577 3738659 TCCCAACAGCTAACTTTCC 59 3738500 3738518 GTCCATTATCCACGTTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17917 FBgn0037431 FBtr0081709 3 1 1 83 3R 2167854 2168073 TAATGTTACTTACCACGGGC 59 2168119 2168137 TTTACGGAGGGTTCATCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113339,FBtr0078898,FBtr0078902,FBtr0113341,FBtr0078899,FBtr0078901,FBtr0113340,FBtr0078897,FBtr0078900,FBtr0113338 1 10 15 217 3R 110087 110105 TAGCTAAGCAGATGGTTGG 59 120999 121298 GATGTTGTACTTATCGCGA 57 NA DesignRelaxed Drosophila melanogaster 50 CR32477 FBgn0052477 FBtr0072500 1 1 1 80 3L 227382 227403 CACATCTCATCTATAGCTTCTG 57 227444 227520 CGTCATTTCTCAAACGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10587 FBgn0037039 FBtr0078333 1 1 1 82 3L 20955088 20955106 GAAACTATTGCGTACGGTG 58 20954871 20955042 CTGTTAAATGAACCGTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3947 FBgn0037019 FBtr0078278 1 1 1 60 3L 20771082 20771163 GGGTATCCTACTTTATAGCAGG 59 20771043 20771061 TATACCAGCTCACTGACCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33710 FBgn0053710 FBtr0091698 3 1 1 121 3L 19945657 19945676 ACGTGCATATAAGTACAGGA 58 19945490 19945574 CCCATTGATAACGTAATCCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG11905 FBgn0036678 FBtr0113175 2 1 10 95 3L 16926458 16928310 AAATGCGCTTTCTTGTTCTC 59 16926160 16926400 AGTTAGCTTCTAGTTGGGC 58 NA InUTR Drosophila melanogaster 50 ome FBgn0002997 FBtr0112816,FBtr0075688 3 2 2 80 3L 14737472 14737490 GGTCAACTATATGCCAAGC 58 14737534 14737639 CATGATGGACGTATTCTCC 57 NA Drosophila melanogaster 50 CG11261 FBgn0036332 FBtr0075899 1 1 1 64 3L 13003070 13003088 TTTACGGAGCAGGAATTGG 59 13002952 13003042 TTTAATGCCTCTTGGAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17144 FBgn0036267 FBtr0076015 3 1 1 73 3L 12201017 12202407 CGTAATTCCAATAGTCTAGCTC 58 12200965 12200983 GTATAAGCCGGAATGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6084 FBgn0086254 FBtr0076139,FBtr0076138 1 2 2 92 3L 11614648 11614666 ACAATCACTGCCTACAGTC 59 11614514 11614592 TTCCTTGATCTTAGCCTCC 58 NA Drosophila melanogaster 50 Hsp67Bb FBgn0001228 FBtr0100653,FBtr0100655 3 2 2 88 3L 9366346 9366364 CAATCATATTCACCTGCCG 58 9366416 9366502 GTAGATCACCACATTGCTG 58 NA Nonspecific Drosophila melanogaster 50 Fhos FBgn0052030 FBtr0076577,FBtr0076578 3 2 2 82 3L 8779324 8779410 GAAGAAACCTCGTGATGGT 59 8779456 8779474 TCAGAAAGCTCTTATGCCG 59 NA Drosophila melanogaster 50 Cp16 FBgn0000356 FBtr0076574 1 1 1 130 3L 8725299 8725317 ATTCCCTCAACCGTTATGG 59 8725411 8725563 CTTGAAGACTGGATCGACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6416 FBgn0035917 FBtr0089564,FBtr0089566,FBtr0089565,FBtr0089562 1 4 8 85 3L 8623725 8627690 TTCAATACCAACCCTACCG 58 8627739 8627757 CAAGTAGGACTCTGTCGTG 59 NA Drosophila melanogaster 50 eIF4E-5 FBgn0035823 FBtr0076747 1 1 1 70 3L 7888694 7888714 GGAGCTGTCATCAATATACGT 59 7888799 7888817 ATTTCGTTACTCCCGTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7506 FBgn0035805 FBtr0076822 3 1 1 158 3L 7634113 7634189 CAAGACTACTTTCCGACCA 58 7633973 7633991 AAATCGATCGGTTTGTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17150 FBgn0035581 FBtr0073351,FBtr0073349 2 2 3 81 3L 4888910 4889142 CTATTTCACGACGGAGTACC 59 4889186 4889204 TTCACTACTCGGAATGTGC 59 NA Drosophila melanogaster 50 CG13721 FBgn0035554 FBtr0073328 1 1 1 60 3L 4497426 4497445 GGATATTGGCCACATTACAG 58 4497255 4497406 AACCTCCATAGTATGGATAACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pxn FBgn0011828 FBtr0072950,FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951 1 5 5 146 3L 2611834 2611853 GAACAATAATCGGCTAAGCC 59 2611549 2611649 TACATGATCAGGCGATTCAG 59 NA Drosophila melanogaster 50 CG16984 FBgn0062517 FBtr0072928 3 1 1 77 3L 2595971 2596045 AAATCCTGTTGTGGAGAGG 59 2596086 2596104 GATAGCTTCTTGTCCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9018 FBgn0035318 FBtr0072910,FBtr0072909 1 2 2 125 3L 2235960 2236055 ATACAGGTGAACGAAGCTG 59 2235853 2235871 GAGAAGTTCCTTCTGCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 apt FBgn0015903 FBtr0072068,FBtr0072066,FBtr0072070,FBtr0072069,FBtr0072067 1 5 5 84 2R 19484451 19484469 TTTATGAAGATTGCCGCCA 59 19484516 19484597 TGTACTGTGTCATTTCCGTC 59 NA Drosophila melanogaster 50 CG5482 FBgn0034368 FBtr0086661 1 1 1 102 2R 14518209 14518227 CAAGATTGCCGCTTATGAC 59 14518065 14518145 CTCCAATATTCTTCCTTTGCG 59 NA Drosophila melanogaster 50 Ark FBgn0024252 FBtr0086968,FBtr0086967 1 2 2 91 2R 12909216 12909234 GGATGTACATCGAGCAGAG 59 12909289 12909428 TAGCTTCAGATACGGTTGC 59 NA Drosophila melanogaster 50 CG8443 FBgn0034087 FBtr0087242 3 1 1 97 2R 12079642 12079660 TGGGAATGTCTCTTAAGCT 57 12079720 12079801 GATGTTGCTATCGATCAGTG 58 NA Drosophila melanogaster 50 CG8315 FBgn0034058 FBtr0087267 1 1 1 200 2R 11879534 11879606 TTACTCCGCTTTGGTAAGTG 59 11879353 11879371 CTTATTGGCGATGTTGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10131 FBgn0033949 FBtr0087499 3 1 1 148 2R 10517826 10517901 AGAGACAACAGATGCTAGTG 59 10518012 10518030 TAAAGTTACCGGACGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6553 FBgn0033880 FBtr0087642 3 1 1 62 2R 9742519 9742537 GAGAACCAGAACATTTGCC 59 9742419 9742493 GGGTGTTTCACAGTAAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8830 FBgn0033738 FBtr0087950 3 1 2 240 2R 8322186 8322204 GATTGGATCACGTACTGCA 59 8321899 8321982 TCCTTGGCAAGATCTTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13215 FBgn0033592 FBtr0088192 1 1 1 60 2R 7127462 7127480 GTTTAAGCCTGATCCAAGC 58 7127420 7127439 GAAACGAATCCTGGATTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pfk FBgn0003071 FBtr0088420 1 1 3 166 2R 5997999 5998018 TGTTTAAGAACCATGCAGGA 59 5999073 6000132 ATGAAGTAGACCTTGCAGC 59 NA Drosophila melanogaster 50 CG12744 FBgn0033459 FBtr0088377,FBtr0088378 2 2 2 132 2R 5763337 5763355 GAGAAGTCCTTAGATTGGC 57 5763451 5763525 GATTCGGATTGAAGAAGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8172 FBgn0033362 FBtr0113058 3 1 3 221 2R 4898915 4900535 ATGAGCTGGACTTGATACC 58 4895971 4895989 GATTGGATCGGGTGTAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11060 FBgn0033149 FBtr0089045 1 1 1 60 2R 3064558 3064577 TGCAATGTGAACCATATGAG 58 3064598 3064711 GGACTTAGATTCTGAATGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30157 FBgn0050157 FBtr0086186 2 1 1 144 2R 2862195 2862213 CTACTTCCACTACGGATGC 59 2862069 2862087 CAGGATCTGCTGAATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CheB42a FBgn0053348 FBtr0086168 3 1 1 215 2R 2837258 2837328 GGTATTTGGTCAAGTCTATCG 58 2837564 2837583 TTCAAGTCCAGTTCGTAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG40133 FBgn0058133 FBtr0111297 3 1 1 67 2R 38748 46847 ATCTGCTAGCAACAAGGAG 59 46878 46896 GATCAGTATGCTTGAGTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His1:CG33852 FBgn0053852 FBtr0091856 1 1 1 69 2L 21517106 21517124 AATTTAAAGGAACGTGGCG 59 21517156 21517175 CGCATTTATAAGTGGCAGTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17472 FBgn0032868 FBtr0081382 3 1 1 161 2L 20634603 20634694 CTTTGCCCTTAGTAGTAAGGA 58 20634817 20634835 ACTTCAAGGTTACTTCGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Orc5 FBgn0015271 FBtr0080543 1 1 1 60 2L 13831263 13831282 ATTCTAGAGGAGAAAGTCGG 58 13831305 13831323 GCACCAAAGTTGAGATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17024 FBgn0032437 FBtr0080371 1 1 1 63 2L 12454483 12454585 GTGGTAATCCTATGTGTTCTG 58 12454610 12454628 ATGTCCGGAGAATTTGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cbt FBgn0043364 FBtr0078083 1 1 2 193 2L 478201 479421 AACAAGTTGGAAATCGTCG 58 478026 478044 CTCATAGCAGGTTGTTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 smo FBgn0003444 FBtr0078129 1 1 1 74 2L 279068 279086 GTATCCGGCAGTAATTGTG 58 279124 279202 GTAAACTGAAGCAACCAGC 59 NA DesignNoJunction Drosophila melanogaster 50 tRNA:V3b:92Ba FBgn0012003 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:CR31356 FBgn0051356 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CycD FBgn0010315 FBtr0074164,FBtr0074165 2 2 3 152 X 15802347 15802584 GAATGGATGATGGAAGTGTG 58 15802214 15802232 CTTTGAAGCCAGTAAGAGG 57 NA Drosophila melanogaster 50 CG9053 FBgn0030606 FBtr0073969,FBtr0073968 1 2 2 60 X 14960238 14960256 CCTACGACAAGGAGATGAC 59 14960196 14960214 GAGTGGTATAGGCACTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ran FBgn0020255 FBtr0073471,FBtr0073472 2 2 2 85 X 11040050 11040068 ATACCAATCGTCCTCTGTG 58 11039983 11040002 TTCTTCTTTCGGTGGAAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34449 FBgn0085478 FBtr0112753 2 1 3 83 X 9227647 9230968 TTTACAGTAAGCTATCGCCC 59 9227583 9227601 GTTCACAGTCCTGACTCTG 59 NA Drosophila melanogaster 50 rst FBgn0003285 FBtr0070562 2 1 1 109 X 2849668 2849990 GACAGAGATGGTGATACGC 59 2849577 2849595 TTATGTCAAGGGTTTCGCT 59 NA Drosophila melanogaster 50 CG41521 FBgn0085666 FBtr0114113 2 1 1 64 U 2919166 2919185 GACAACCAAGGTTCATTTGG 59 2919211 2919230 GAATTGGACATTATAGCCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40313 FBgn0058313 FBtr0113862,FBtr0113861 2 2 2 61 U 1924328 1924347 CTATTCCAGCCGAAGTATGG 59 1924286 1924304 AGTCGAATACATGAGCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CaMKII FBgn0004624 FBtr0089217,FBtr0089218,FBtr0100148,FBtr0089219,FBtr0100146,FBtr0100147 2 6 6 80 4 1068498 1068517 CAGGATATCTGTCTCCTGAG 58 1068344 1068456 AAAGAATAACTCCACATGCC 58 NA Drosophila melanogaster 50 CaMKI FBgn0016126 FBtr0089067,FBtr0089069,FBtr0089068,FBtr0089066,FBtr0089064,FBtr0089065 1 6 7 94 4 467853 470559 TTTGAGAAGGTTCAGTGCA 59 470887 470908 CATACGTTTCTAAGAGTTGCAC 59 NA Drosophila melanogaster 50 CG1674 FBgn0039897 FBtr0089118,FBtr0089119,FBtr0089117 3 3 4 83 4 254903 254921 CCAACATCCATTGCATCTG 59 254968 257035 TTGGTCATTGACATTCGGT 59 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 2 7 7 83 4 208987 209060 CGGATCATAGACTTACGGA 57 208922 208940 CGAAGCATGGTTTAGTCAG 58 NA Drosophila melanogaster 50 bxd FBgn0020556 FBtr0083341 2 1 4 73 3R 12579400 12579418 AAATTCAGAACGCGTTGAG 59 12568459 12568477 GAATTATGACCGGAATCGT 57 NA DesignNoJunction Drosophila melanogaster 50 Gfat2 FBgn0039580 FBtr0085297 1 1 1 62 3R 24164219 24164237 CAGGATGAGGTTCGATACG 59 24164175 24164193 ATCTCCGGTATGTACTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pi3K92E FBgn0015279 FBtr0083940,FBtr0083941 1 2 2 83 3R 16457025 16457246 GCTTACACTTTCTGAAAGACG 59 16456962 16456980 TTTCCAGGTACGATTCGTG 59 NA Drosophila melanogaster 50 pyd FBgn0003177 FBtr0089783,FBtr0089784,FBtr0112822 2 3 8 81 3R 4660660 4664121 AGTCTAAGGTACCCTACGAC 59 4660598 4660616 TAGATGCTGTACTTGCTGG 59 NA Drosophila melanogaster 50 CG1091 FBgn0037470 FBtr0081640,FBtr0081641 3 2 2 86 3R 2909299 2909420 GCATGCTAGGTATTCAGCA 59 2909231 2909249 TGTATGGGATCCTGTACCA 59 NA Drosophila melanogaster 50 sec23 FBgn0037357 FBtr0078710,FBtr0078711 2 2 2 104 3R 1476887 1476905 GATCGTCAGTTGATTCGTC 58 1477041 1477059 CATGAATTGCGGGAATAGG 58 NA DesignNoJunction Drosophila melanogaster 50 tacc FBgn0026620 FBtr0089955,FBtr0089953,FBtr0089952,FBtr0089954 3 4 7 83 3R 570242 570260 CAAAGTTTGGAGGTCTTCC 58 569896 570197 TCAGTTGAGTATCCATATCGG 58 NA Drosophila melanogaster 50 CG33056 FBgn0053056 FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311 3 5 5 132 3L 21191820 21191990 GGAACATATGAGGGAGCAC 59 21191706 21191726 AATTATGTCCACGCTATCCTC 59 NA Drosophila melanogaster 50 CG6680 FBgn0036968 FBtr0074842,FBtr0074841 2 2 2 165 3L 20311902 20311979 CTCATTTCTGAACATCACCAC 59 20312106 20312124 GATCTGGATCACCGAATCC 59 NA Drosophila melanogaster 50 CG13698 FBgn0036773 FBtr0075137 2 1 1 60 3L 18083548 18083568 GTTACTACGATAGTCCATCGG 59 18083447 18083466 TTAAACGGTCCGAAATAACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11905 FBgn0036678 FBtr0075304,FBtr0075301,FBtr0113173 1 3 10 208 3L 16926458 16928309 AATGCGCTTTCTTGTTCTC 59 16923957 16923975 GTTGATAGGCTCCATAGGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 lark FBgn0011640 FBtr0076842,FBtr0076843,FBtr0076841,FBtr0076844 1 4 5 98 3L 7333781 7333799 TACAGAGATCGCATGTACG 58 7333861 7333984 GTCATAGTCCCTAAAGCCA 58 NA Drosophila melanogaster 50 CG14995 FBgn0035497 FBtr0073274,FBtr0073273 2 2 4 184 3L 4097664 4097682 TCTACGAGGATGCATACCA 59 4095866 4097518 GTAGTATTCCTCTTTCGTGGG 59 NA Drosophila melanogaster 50 Pxn FBgn0011828 FBtr0072954,FBtr0072953,FBtr0072952,FBtr0072951 1 4 5 110 3L 2607768 2607786 TCAAGAATGTGACCATCCC 59 2604263 2607695 CCAAATCCACGTTGTTTCTG 59 NA Drosophila melanogaster 50 CG16758 FBgn0035348 FBtr0072966,FBtr0072964,FBtr0072963,FBtr0072965 1 4 4 126 3L 2499617 2499702 AACCACGATGAGGTTATGG 59 2499509 2499527 ATCCAACGCTACTTCTTCG 59 NA InUTR Drosophila melanogaster 50 CG12038 FBgn0035179 FBtr0072619,FBtr0072620 1 2 2 168 3L 994904 994981 TAATGCAGTATCTGGCCTC 58 995113 995131 GCACTCTGGTACTTCAGTC 59 NA Drosophila melanogaster 50 eIF-5A FBgn0034967 FBtr0072172,FBtr0072173 2 2 2 65 2R 19946637 19946656 ATAGTGGCAAGGACTTACTG 59 19946746 19946764 TAATTGCGATAACGCACTC 58 NA DesignNoJunction Drosophila melanogaster 50 Or59a FBgn0026384 FBtr0072023 1 1 1 60 2R 19328003 19328022 AAACTATGTTAGCGACTGCT 59 19327962 19327982 TTTGATGTGGGATGAGATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11055 FBgn0034491 FBtr0086271,FBtr0086270,FBtr0086272 1 3 3 141 2R 16148062 16148142 CTTACACTTAACATGGACCC 57 16148245 16148324 CTTCGTTGGATAACATTGTG 57 NA Drosophila melanogaster 50 Obp56a FBgn0034468 FBtr0086476 2 1 1 77 2R 15585641 15585659 TGAAACTTACCGAGGAGGA 59 15585699 15585718 CAAAGCACTTGATGTTCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sli FBgn0003425 FBtr0087303,FBtr0112832 1 2 5 81 2R 11773649 11773668 ACTGACAATCAGATCCACAC 59 11773145 11773607 GATTGTTGTTTAGGCGTAGTC 59 NA Drosophila melanogaster 50 skf FBgn0050021 FBtr0114569,FBtr0114570,FBtr0088196 3 3 3 64 2R 7117475 7117493 TGTGACATGCTAGAAGCAG 59 7117366 7117447 ATCAGCTTGGAAAGAGCAG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG2264 FBgn0033478 FBtr0088400,FBtr0088399,FBtr0088401,FBtr0088402 2 4 5 153 2R 5948857 5949128 GAGTTTCACAACCGTAGTG 58 5949244 5949263 AGTGTGGATTAACTCCAGTG 59 NA Drosophila melanogaster 50 Spn43Ab FBgn0024293 FBtr0100356,FBtr0089054 1 2 2 87 2R 3039482 3039502 CATTTCATTAACGCAGTGGAG 59 3039349 3039436 CTTTAAGCAATCCAGTTTCCAG 59 NA Drosophila melanogaster 50 CG17082 FBgn0039994 FBtr0111287,FBtr0111288,FBtr0111286,FBtr0111285,FBtr0111290,FBtr0111289 2 6 6 90 2R 644086 644172 TCTATTGGTCGATCAAAGGAG 59 644224 644242 CATTCTCTGAGGCTGACAG 59 NA Drosophila melanogaster 50 cact FBgn0000250 FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847 2 4 4 182 2L 16323076 16323094 CCTTGACAGAGAAGTTCGG 59 16314811 16314829 AGATATCAATGTGACCCGC 59 NA DesignNoJunction Drosophila melanogaster 50 prd FBgn0003145 FBtr0080299,FBtr0080298 2 2 2 60 2L 12084916 12084934 CTGCGTATCGAAGATCCTG 59 12084874 12084893 AATTACGCCTGGTCTAATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ca-beta FBgn0015608 FBtr0080217,FBtr0080220,FBtr0080219 1 3 4 82 2L 11163274 11163295 CGGATATGTTCGATGTAATCCT 59 11163090 11163233 CCAATACGTCTCCAAGTACTC 59 NA Drosophila melanogaster 50 CG13138 FBgn0032211 FBtr0080066,FBtr0080067 1 2 2 60 2L 10301076 10301094 GTACCGAAACCGTATCCAG 59 10301034 10301052 CTGGCACCTTTATTTCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4502 FBgn0031896 FBtr0079417,FBtr0079416 2 2 2 169 2L 7196232 7196327 ACGACAAGATCACAAGGTG 59 7196022 7196043 ACTCGAATAGACTATCGTTGAC 59 NA Drosophila melanogaster 50 CG2837 FBgn0031646 FBtr0077402,FBtr0077401,FBtr0113021,FBtr0077403 3 4 4 165 2L 4904903 4904924 AGTTTACTCCAATATACCACCG 59 4904700 4904721 CTTGTTGAACGATTGATCATCC 59 NA DesignNoJunction Drosophila melanogaster 50 p16-ARC FBgn0031437 FBtr0077694 1 1 1 100 2L 2580478 2580496 ATGAGAGCGAGATTACGAC 58 2580560 2580578 CACATTCTGGTTCTTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40486 FBgn0069972 FBtr0111188 3 1 2 96 X 22361301 22361319 CAACATGTATCCGCTTACC 58 22360947 22361244 GCTTGTGACCTTTATCTTAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33491 FBgn0053491 FBtr0089603 2 1 1 70 X 20073412 20073516 TGATGGCCATAGTTGAGTG 59 20073360 20073378 ATTCATGGCCTTGTACAGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15719 FBgn0030440 FBtr0073751 3 1 1 60 X 12898406 12898613 CATAGCTTGTCCTGTAGAGAC 59 12898366 12898386 GTAAACCGTGAGAAAGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14798 FBgn0029588 FBtr0089693,FBtr0089694 2 2 2 286 X 1587078 1587096 AAATCGAGCCTCACATCAG 59 1587472 1587490 AAAGTCATGGGATCCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32016 FBgn0052016 FBtr0089231,FBtr0089234,FBtr0089233,FBtr0089230,FBtr0089229,FBtr0089232 3 6 6 146 4 974515 974656 CTACTCTCAAGAATTGCATTCG 59 974390 974408 CTTGGTGATTGCGTATCCT 59 NA Drosophila melanogaster 50 CG15529 FBgn0039748 FBtr0085567 3 1 1 147 3R 25977971 25977989 CCTGATGGAAGTCAGATCG 59 25978100 25978366 GTCCACAATGACGTAATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7549 FBgn0037559 FBtr0081825,FBtr0081826,FBtr0110951 2 3 3 86 3R 4085351 4085369 CACCTACAAGCTTCTCCTG 59 4085418 4085508 ATACGTGGAATACCATGCAG 59 NA Drosophila melanogaster 50 Osi1 FBgn0037406 FBtr0078588 2 1 1 152 3R 1999731 1999749 TGTTCAACGACGCTAAGAG 59 2000066 2000145 CTTCCGATTCCTCCATGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9809 FBgn0037248 FBtr0078946,FBtr0078945,FBtr0078947 2 3 3 101 3R 251619 251638 ATGAATTACGCTATGTGGAC 57 251471 251555 GTTGTTCCGGCTTATTCTC 58 NA Drosophila melanogaster 50 CG33766 FBgn0053766 FBtr0091767 2 1 1 69 3L 22638773 22638865 TAATCGTGCCAATACCTACG 59 22638897 22638915 TAGCTGCGATTAAAGTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15609 FBgn0034180 FBtr0114626,FBtr0114629,FBtr0087019,FBtr0114627,FBtr0114628,FBtr0114625 2 6 6 91 2R 12899519 12899537 TAAGGTTACCAACCTGACG 58 12899311 12899465 TAGACATGTCAATGAGCTCC 59 NA Drosophila melanogaster 50 CG17266 FBgn0033089 FBtr0086144 2 1 1 87 2R 2563161 2563180 CAAATACAGTCCCAACTGAG 58 2563027 2563112 ATATCATTCGTCCGATTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Me18S-A627 FBgn0086045 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-276b FBgn0067716 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 DIP1 FBgn0024807 FBtr0077372,FBtr0077371,FBtr0077373,FBtr0077370 1 4 4 170 X 21497272 21497350 TTCTTTGCATTATGCGTCC 58 21497120 21497138 GAGAGTTGCACACTTTCAC 58 NA Nonspecific Drosophila melanogaster 50 sw FBgn0003654 FBtr0089403,FBtr0089404 1 2 13 72 X 20105893 20105911 AAGAGACACTGGTCTACAC 58 20103229 20105857 TTGTATTCATCATCGCCGT 59 NA DesignRelaxed Drosophila melanogaster 50 Sdic4 FBgn0053499 FBtr0089612 3 1 1 101 X 20092414 20092432 ATATCCACGCACTACAACC 59 20092264 20092349 CTTTGTGTCCTTTAGCGAC 58 NA Nonspecific Drosophila melanogaster 50 Sdic3 FBgn0052823 FBtr0089465 1 1 1 115 X 20087949 20087967 TAAGCGTCTACAATGTGCA 59 20085962 20087870 ATCAAATGCAAGCACATCG 59 NA Nonspecific Drosophila melanogaster 50 CG11943 FBgn0031078 FBtr0074798,FBtr0074799 1 2 2 80 X 19747833 19747915 GGATCTGGTCTATAGCACG 59 19747959 19747977 TTGGAGTTCATGAAGTCGA 58 NA Drosophila melanogaster 50 skpC FBgn0026175 FBtr0074797 1 1 1 60 X 19710475 19710493 TGTTCGAAATCATACTGGC 57 19710517 19710535 CAACAGAGATCCACTAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pfrx FBgn0027621 FBtr0074717,FBtr0074713,FBtr0074715,FBtr0074714,FBtr0074718,FBtr0074716,FBtr0074719,FBtr0074720 1 8 8 60 X 19401733 19401752 GTCGTCTACAATAACGAGGG 59 19401772 19401793 GGATGTTCATCAGGTAGTAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8010 FBgn0031008 FBtr0074688 1 1 1 143 X 19161473 19161491 ATACAACGACTTCGAGGAG 58 19161282 19161366 TGCCTGTAATACTTCTCCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG7556 FBgn0030990 FBtr0074697 3 1 1 102 X 19072116 19072134 ATTCGCAGATTCAGACTCG 59 19071955 19071973 GTAAGATCCTCGTCAGTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6290 FBgn0030921 FBtr0074563 2 1 1 65 X 18331607 18331625 CACAGAATCCGCTAGAGTC 59 18331654 18331672 CTGCCTCCGCTATATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32548 FBgn0052548 FBtr0074569,FBtr0074568 3 2 2 85 X 18330497 18330515 CCTTCCTCGATTATCAGCG 59 18330430 18330450 ATCGGGATAGTAGTGGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8915 FBgn0030833 FBtr0074447 2 1 1 96 X 17138025 17138044 ATAGCAGCTATCAGTGTCTC 58 17137887 17137966 TGCATTGTCTATTCATGCG 58 NA Drosophila melanogaster 50 mei-218 FBgn0002709 FBtr0100640,FBtr0100639 3 2 2 89 X 17033337 17033420 TCTAGATTGAGCCAAAGACG 59 17033267 17033285 AGGATTTGGTAGTTGCTCG 59 NA Nonspecific Drosophila melanogaster 50 CG4949 FBgn0030813 FBtr0074380,FBtr0074381 2 2 2 129 X 16973405 16973424 CATCCTTTGTGAATTACCGC 59 16973516 16973534 ATAAGCAGCTTGAACTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Stim FBgn0045073 FBtr0074161,FBtr0074160,FBtr0074159 3 3 3 81 X 15829503 15829521 AGAATGTTCTGTACGGTCG 59 15829366 15829460 GTAATACGTGCTCTAGAACCC 59 NA Drosophila melanogaster 50 AlkB FBgn0065035 FBtr0074168 2 1 1 89 X 15752680 15752699 GTAGTACGTTATCGGGTCAC 59 15752548 15752567 GAAATATTGCAGTCTGACCA 57 NA DesignNoJunction Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 1 7 7 80 X 15717652 15717670 TATCACCGGCATCTATTCG 59 15717712 15717802 TTGCCGTATATCAACAGTCTC 59 NA Drosophila melanogaster 50 eag FBgn0000535 FBtr0111009,FBtr0073955 3 2 2 90 X 14880354 14880372 TCGTCTACTGCAATGAGTC 59 14880426 14884364 ATGAAGCCGCATACATACC 59 NA Drosophila melanogaster 50 CG14408 FBgn0030581 FBtr0073991,FBtr0073990 3 2 4 109 X 14722054 14723176 TTCAGCAGATCTTCAGAGC 59 14721963 14721984 TTGAGTTCCTCCACTATAATGG 59 NA Drosophila melanogaster 50 CG5321 FBgn0030575 FBtr0073934 1 1 1 60 X 14574473 14574491 TCGCATAGTAGTCGATTGG 58 14574515 14574533 AATGTTGTGGAACTCTCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL38 FBgn0030552 FBtr0073902 3 1 1 111 X 14121426 14121444 GACTTCTATCGTCAGCACC 59 14121516 14121607 CTTTGATCTTCAAGACATCGTG 59 NA Drosophila melanogaster 50 CG11158 FBgn0030511 FBtr0073812 1 1 1 62 X 13577484 13577502 GACCACTTACCAACTTTGC 58 13577527 13577546 CAATGTTCGTCAGAAATGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 up FBgn0004169 FBtr0073851,FBtr0100563,FBtr0073852 3 3 6 127 X 13493488 13494115 ATGAAGAGTACACCAGCTC 58 13490712 13490730 TTTCAGCTGATCATCGAGG 59 NA Drosophila melanogaster 50 CG3775 FBgn0030425 FBtr0073690 1 1 1 60 X 12696711 12696732 TACATGATGACGATAAACTGGG 59 12696753 12696771 AGTTTCCTCAACTGTTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12643 FBgn0040942 FBtr0071481 2 1 1 95 X 10159006 10159024 GAATCCATTCGATTCCGTC 58 10158929 10158948 CAATAGCGATAGGATACCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12645 FBgn0030181 FBtr0112973,FBtr0071433 1 2 2 60 X 10047787 10047806 TGGATTATTCCAACGATCGG 59 10047829 10047847 CTGGACCTTAGATGTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33557 FBgn0053557 FBtr0091534 1 1 1 83 X 9903660 9903678 GCAAGCTTTCAAAGATCGA 58 9903724 9903800 ATTCAGTGCCTGTTTCTAGG 59 NA Drosophila melanogaster 50 CG1986 FBgn0030162 FBtr0071395 1 1 1 121 X 9804602 9804620 GAGACCTTCGAGGATTTCG 59 9804441 9804518 GAATAGGGTCCAAGTTAGCA 59 NA Drosophila melanogaster 50 Gga FBgn0030141 FBtr0071363 3 1 1 138 X 9495408 9495426 ATCCACAAATGTGACGGAG 59 9496196 9496215 GTACTTCTTCGATACCAGGC 59 NA DesignNoJunction Drosophila melanogaster 50 Dsor1 FBgn0010269 FBtr0071313 1 1 1 67 X 9143683 9143701 CATCTGCCTGAAGAAACAG 58 9143732 9143821 GTATCCACGGATGACTCAG 59 NA DesignRelaxed Drosophila melanogaster 50 Ubc-E2H FBgn0029996 FBtr0071114,FBtr0071112,FBtr0071113 1 3 3 62 X 7983587 7983605 GCGTTGTACGATCTATCGA 59 7983543 7983561 ATTGGGATATGTGAGCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18624 FBgn0029971 FBtr0071140,FBtr0071141 2 2 2 125 X 7787312 7787330 GTCTTGGGACTGGATAAGC 59 7787205 7787223 GTATAGGGCACTCTTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tom40 FBgn0016041 FBtr0071074 3 1 2 122 X 7631708 7631915 AGTGCAAAGATATCCAGGC 59 7632001 7632019 GATATCCACTGGGTACCAC 58 NA DesignRelaxed Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 1 8 8 166 X 6579447 6579465 ACAACGTCTTCCACTACAG 59 6579594 6579676 TGGAGAAGTCACATTGAAGG 59 NA Drosophila melanogaster 50 CG3774 FBgn0029849 FBtr0070874,FBtr0070875 3 2 2 60 X 6116022 6116041 TCTTTACGCACATGTTACCT 59 6116064 6116082 TGTTGGACTATATTGCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11462 FBgn0029815 FBtr0070831 3 1 1 166 X 5734697 5734715 GTTGCTCTCAGAAGTACCT 58 5734549 5734569 CGAGCACACTTAAGATTAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lin-52 FBgn0029800 FBtr0070840 3 1 1 106 X 5648378 5648477 GATTAATGAACTAGCCCAGC 58 5648291 5648309 GAGTCATCTCCATTGCCTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG12680 FBgn0029740 FBtr0070726 3 1 1 60 X 4891718 4891739 GGAGGATATTCATGTGTTTGAG 58 4891760 4891778 GGTAAATGCCATTAGTGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2875 FBgn0029672 FBtr0070586,FBtr0070587 3 2 2 67 X 3466638 3466656 CTTTCTCATGGACTCCCTC 59 3466527 3466546 TAAAGATTCCCTGAAGAGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG32793 FBgn0052793 FBtr0070550 2 1 1 63 X 2824769 2824787 TAACCGCTTCAATAACCGA 58 2824814 2824832 CTGGAAGTAATCGTCCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sgg FBgn0003371 FBtr0070466,FBtr0070474,FBtr0070467,FBtr0111035,FBtr0070475,FBtr0070476,FBtr0070471,FBtr0070472,FBtr0070468,FBtr0112828,FBtr0070469,FBtr0070473,FBtr0070470 2 13 13 80 X 2567069 2567087 CATGGAGGGTAATCACACC 59 2567130 2567220 TGTATTGAGAGCTCATGCTC 59 NA Drosophila melanogaster 50 CG32803 FBgn0052803 FBtr0070356 3 1 2 100 X 1795541 1795559 TAAAGATACATGGCCCAGG 58 1795300 1795477 GATTTGAAGCCATGACCTG 58 NA Nonspecific Drosophila melanogaster 50 CG14815 FBgn0023516 FBtr0070368,FBtr0070367 3 2 2 60 X 1761161 1761180 CCTTTAGAGGACAGAACCAG 59 1761120 1761138 GAAATGACCATCTTCAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14799 FBgn0029591 FBtr0070303 3 1 1 76 X 1719899 1719917 TTACAACTCCAGTTCACGA 58 1719957 1719975 TGGGTATTGTGGTCATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sta FBgn0003517 FBtr0070289,FBtr0070290 1 2 3 224 X 1376898 1376918 GGAGGCTTAGATATTCTGTCC 59 1376502 1376712 GATGACGAAGATGTCCGAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG32808 FBgn0052808 FBtr0070295 1 1 1 63 X 1363084 1363102 GAAGGTCAAACTGCAAGTG 59 1363039 1363057 GTGCAGATAGGTCTGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 O-fut2 FBgn0027791 FBtr0070296 3 1 1 61 X 1359770 1359790 CTTTACGACGTAAACATCTCC 58 1359729 1359747 GCCATGCGAATATAGACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14634 FBgn0040892 FBtr0110804 2 1 1 75 X 757029 757047 ATAGTCACGTCTAGCACCT 59 757086 757104 AGTAATCCTCGATGGAGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sdk FBgn0021764 FBtr0070132,FBtr0070131,FBtr0070133,FBtr0070130 1 4 4 126 X 622650 622668 AGTTCTACCGATTCCACAG 58 622758 624284 TCAAAGATGCCCATGTAGG 59 NA Nonspecific Drosophila melanogaster 50 CG17896 FBgn0023537 FBtr0070093,FBtr0070092 2 2 2 60 X 385921 385940 CAGGCAAGTACATTTACGAG 58 385880 385898 CCCATATTAGATTGCACCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32817 FBgn0052817 FBtr0070077 2 1 1 91 X 373964 374066 CTGCGTGACTTTATTTGGT 58 374121 374139 ATTGTTTGATGCCCTAGCT 59 NA Nonspecific, InUTR Drosophila melanogaster 50 Or1a FBgn0029521 FBtr0070070 3 1 1 113 X 210301 210319 AACCTTCCTCCTAAACACC 58 210393 210524 TATCCAAACAAGAAGAGGTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG41542 FBgn0085679 FBtr0114128 2 1 1 60 U 9484845 9484866 CAGACGACTACGATATAATGGA 58 9484887 9484905 TGACGTAAACGTACTTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40950 FBgn0085543 FBtr0113956 1 1 1 131 U 8200821 8200842 TGATAAGTGGATAGTGGATCAG 58 8200361 8200382 CTGCCCAACTTAGTATAAACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40267 FBgn0058267 FBtr0113852 3 1 2 103 U 367323 367342 GCAGTACCGGAATATTAACC 58 326550 367257 AAATAGATGAGACCGAGGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG11155 FBgn0039927 FBtr0089193,FBtr0089195,FBtr0089194 3 3 3 115 4 1147554 1147632 AGTAATACGAGTAGGTGCC 58 1147710 1147729 GTGTATTGGGAAGAAGAGTC 57 NA Drosophila melanogaster 50 CG11155 FBgn0039927 FBtr0089193,FBtr0089195,FBtr0089194 1 3 3 114 4 1147555 1147633 GTAATACGAGTAGGTGCCA 58 1147710 1147729 GTGTATTGGGAAGAAGAGTC 57 NA Drosophila melanogaster 50 MED26 FBgn0039923 FBtr0089253,FBtr0089254 2 2 2 81 4 803971 803990 CGTCAACAAATCGAGATCTG 59 803853 803930 GGAGAATTCATTGAAGTGTCTG 59 NA Drosophila melanogaster 50 bip2 FBgn0026262 FBtr0089110 3 1 1 82 4 483732 483753 TTCATAGATTATCCTGGACCAG 58 483118 483691 GAATCAGTAACAGGAGAATCC 57 NA Drosophila melanogaster 50 CG34036 FBgn0054036 FBtr0100091 2 1 1 189 4 352110 352128 GTTATGCTTCTCAAAGCGC 59 350039 350900 CGTTTACCACTCGTATAGCT 59 NA InUTR Drosophila melanogaster 50 CG2177 FBgn0039902 FBtr0114519,FBtr0089132,FBtr0089133 1 3 3 78 4 333993 334011 AACTCTTGGATTGGTTGTG 57 333875 333893 AACGTCTTGATGGCTAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1674 FBgn0039897 FBtr0089116,FBtr0089117 3 2 4 143 4 264202 264268 CAATACAAATGCCGTTGCT 59 264374 265824 TCTTTCGGAACGTATAAGCC 59 NA Drosophila melanogaster 50 snoRNA:Me18S-G423 FBgn0086052 FBtr0114328 1 1 1 60 3R 3901383 3901401 CAAATTATGTGTCGGCGTG 59 3901423 3901443 CATATAAGGAAGGCAGTAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or98P FBgn0067407 FBtr0085225 1 1 1 60 3R 23670832 23670852 AAACCTATTGCTCAGGATCTC 59 23670874 23670892 TGCCATACTCAAAGTAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2118 FBgn0039877 FBtr0085855,FBtr0085856 3 2 2 97 3R 27617448 27617522 TGAGAAGGTCTATTCTGTGG 58 27617370 27617388 GAACTCTTTCGACCTTTGC 59 NA Drosophila melanogaster 50 CG1910 FBgn0022349 FBtr0085839,FBtr0085840,FBtr0085838,FBtr0085841 3 4 4 64 3R 27575212 27575230 AGGAGAAGGTACAGACCTC 59 27575317 27575335 CTTGACCTCTTTCTTGTCC 57 NA DesignNoJunction Drosophila melanogaster 50 kek6 FBgn0039862 FBtr0085821 1 1 1 60 3R 27485357 27485377 CTCCTACATTGATCCCATGTC 59 27485398 27485417 CTTTAGGTTGAGGAACTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CecB FBgn0000278 FBtr0085640 2 1 1 230 3R 26039424 26039445 GAACTTCAACAAGATCTTCGTC 59 26039157 26039175 ATAAGAGAAATGAGCGGGT 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7943 FBgn0039741 FBtr0085560,FBtr0085559 2 2 2 208 3R 25873516 25873534 TTTCGTACTGCGAGAAGAG 59 25873772 25873791 CTACGTAAATTCGCTTGCAC 59 NA DesignNoJunction Drosophila melanogaster 50 janA FBgn0001280 FBtr0085595,FBtr0085597,FBtr0085596 1 3 3 84 3R 25864787 25864805 GAAGGTCTACGGATACTCG 58 25864615 25864633 GTAGTCCGGGTATTTGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Cad99C FBgn0039709 FBtr0085488 2 1 1 88 3R 25678956 25678976 TCACTCTGATTGCCATATCAC 59 25679023 25679113 GTTCTTGTACTTTGACCAAGAG 59 NA Drosophila melanogaster 50 CG7598 FBgn0039689 FBtr0085473 1 1 1 60 3R 25563427 25563447 GACATCTACCACTATGTTCTG 57 25563469 25563487 GAATCTTCGCTATCTGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7582 FBgn0039681 FBtr0085464 3 1 1 180 3R 25506778 25506858 TCAAGAAGGAATACCGTCG 59 25506616 25506634 AAGAGCAGTCCAATGAACC 59 NA Drosophila melanogaster 50 Slbp FBgn0041186 FBtr0085409 1 1 1 60 3R 24978025 24978043 TCCACATCTATGATCCACC 58 24977983 24978001 GAGTCGGAATTACTGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Doa FBgn0053553 FBtr0091524,FBtr0110914 3 2 9 60 3R 24732626 24732644 GCACTAACCTTGGAGTGAG 59 24732666 24732686 TTGATGGTTATCGATCCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12883 FBgn0039538 FBtr0085216 2 1 1 67 3R 23505236 23505254 AGCTGATAAGGTGCTTCTG 59 23505285 23505303 CAGAACATAGATCCTCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mtl FBgn0039532 FBtr0085191,FBtr0085192,FBtr0085193 1 3 3 140 3R 23464015 23464106 ATCATTCTAGTTGGCACCA 58 23464210 23464228 CTCCATGTATTTCACAGCG 58 NA Nonspecific Drosophila melanogaster 50 CG5468 FBgn0039434 FBtr0085029 2 1 1 289 3R 22445556 22445574 CGATATTGGAGATCTGGCC 59 22445827 22445845 TGAAACGAGCGACTTAGAC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Dhap-at FBgn0040212 FBtr0084897 3 1 1 134 3R 21312823 21312841 GAGTTGTGGAGGTAGAGAC 58 21312649 21312727 CCAAAGGGATCTTTCTTAACG 58 NA Drosophila melanogaster 50 CG31288 FBgn0051288 FBtr0084860 2 1 1 72 3R 21124466 21124484 CCTACAAGAAGGCAATGCT 59 21124349 21124430 TTAACAGTGGGAAATGCCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG6995 FBgn0039229 FBtr0100424,FBtr0084699,FBtr0084700 2 3 3 153 3R 20647310 20647329 TTTGCACAAGAACAACACAG 59 20647445 20647531 ATAACGCTTGTTACCGAGG 59 NA InUTR Drosophila melanogaster 50 CG18410 FBgn0039226 FBtr0084741 3 1 1 97 3R 20624871 20624889 TTGGGATTCAAGGACAAGG 59 20624247 20624265 CCAATCAATCCCTTGATGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG13609 FBgn0039170 FBtr0084560 1 1 1 60 3R 20052972 20052991 AAGGAAACAATTTGGAGTGG 58 20053012 20053032 TCGGTTGATCCAATATCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31133 FBgn0051133 FBtr0084583 1 1 1 60 3R 19974308 19974329 CTAAAGGAGCTAACGAAATCTG 58 19974269 19974287 CATGCTCTTTCAACTCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PyK FBgn0003178 FBtr0084213,FBtr0084214 3 2 2 128 3R 18198017 18198035 AGAACGGCTTCATCAAGAC 59 18198213 18198231 CATCCAGGTACTTCCTGAG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG31163 FBgn0051163 FBtr0084197,FBtr0110836 1 2 2 91 3R 18107604 18107622 ATTTCAACGTGAACACGAG 58 18110651 18111205 TATACGTATCGTCCATGCG 59 NA Drosophila melanogaster 50 bap FBgn0004862 FBtr0084087 1 1 1 88 3R 17215690 17215708 CCCTGATCAACATCTACCG 59 17215760 17215778 GTAGAAGTACGGGAATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Calx FBgn0013995 FBtr0083999,FBtr0084000,FBtr0083998 3 3 3 147 3R 16838010 16838030 CCTTTGTGGTATCCATATTCG 58 16838139 16838225 GCGAATGTATCTGGTATGC 58 NA Drosophila melanogaster 50 Atpalpha FBgn0002921 FBtr0089515,FBtr0089514,FBtr0089509,FBtr0089512 2 4 8 90 3R 16786472 16786490 CTTAGAACGAGGGAAACCA 58 16786544 16789461 CATCTTGCGTCTTGATGTG 59 NA InUTR Drosophila melanogaster 50 CG17274 FBgn0038835 FBtr0083989 3 1 2 109 3R 16679382 16679608 GGAGTACATGAAGGAATTCCT 59 16679293 16679311 GAAACTTGCGATTCTCCTG 58 NA Drosophila melanogaster 50 att-ORFA FBgn0067783 FBtr0089481,FBtr0089482,FBtr0089480 2 3 3 60 3R 16378772 16378861 TCAAGATCTATCGTGAGGAG 58 16378731 16378749 CAGTTCATGCTAAGTCCCT 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14294 FBgn0038656 FBtr0083726 2 1 1 60 3R 14727708 14727727 ATTTCTACGTCAAGCTGGAG 59 14727667 14727686 GCACTATCCAATACTTCACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31249 FBgn0051249 FBtr0083483 1 1 1 257 3R 13512308 13512326 TTTGCCTCGATTAACACCA 59 13511920 13511938 GAAGGGTTTACCCACTACC 59 NA DesignNoJunction Drosophila melanogaster 50 mRpS11 FBgn0038474 FBtr0089893,FBtr0089894 1 2 3 105 3R 12898896 12898968 GATCACAAAGGAGTCCTCC 59 12899037 12899055 TAATGGTAACCGCTGTAGC 59 NA Drosophila melanogaster 50 Mhcl FBgn0026059 FBtr0083231 3 1 6 129 3R 11895061 11895595 AACAGCCCGAGAATAACAG 59 11894950 11894972 CTGTTAACTCCATCCTAGTAGAC 59 NA Drosophila melanogaster 50 CG31150 FBgn0051150 FBtr0083189 3 1 1 81 3R 11674489 11674508 CTAAGTTCCATACACCTGGG 59 11674369 11674445 AGTTACCTTCGATCCTGGT 59 NA Drosophila melanogaster 50 c(3)G FBgn0000246 FBtr0083196,FBtr0083195,FBtr0083194 1 3 3 98 3R 11617294 11617385 CGCAAGAGCTGAATAATATGC 59 11617216 11617234 TAGATTTGGCCACTTCTGC 59 NA Drosophila melanogaster 50 CG5623 FBgn0038357 FBtr0083197 3 1 1 72 3R 11592522 11592540 TGATCTTTGGCAAGGAGAC 59 11592468 11592486 ATGTAGACACCTGTGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pxb FBgn0053207 FBtr0083162 3 1 2 60 3R 11510997 11511016 CATCATCACTATCAGCAGCA 59 11512327 11512348 TGGGATAGTGAATACTCTTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12241 FBgn0038304 FBtr0083051 3 1 1 238 3R 11045718 11045736 ATGTGGATGCGTCTATCAG 59 11045999 11046017 TGACAGTAGCCAATGTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG34273 FBgn0085302 FBtr0112468 2 1 1 60 3R 10342923 10342942 CGTCCTCTTCATCTAGTTCG 59 10342964 10342983 TACTTCAGATTGCTGAGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pr-set7 FBgn0011474 FBtr0082929,FBtr0082928,FBtr0082930 1 3 3 97 3R 10142502 10142520 CGTTTGATGAAGGTCACTC 58 10142581 10142670 AAGGGAACTCCTATTGTGC 59 NA Drosophila melanogaster 50 CG14839 FBgn0038219 FBtr0082920 2 1 1 60 3R 10088769 10088789 CCTCAGATCAAGTATACACAG 57 10088810 10088829 TCTAATAGTGCCGTCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9926 FBgn0038190 FBtr0082877 3 1 1 60 3R 9776311 9776330 TGTGGAGCTAAATTCACTGG 59 9776270 9776289 CTCTGAATCCTTCTCATGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14362 FBgn0038186 FBtr0082881 3 1 1 113 3R 9680822 9680840 GTTTCTGAGCACCTTTCAG 58 9680615 9680633 CCGTCCTTGTTGTTATCGT 59 NA DesignNoJunction Drosophila melanogaster 50 DDB1 FBgn0027049 FBtr0082709 2 1 1 82 3R 8881939 8881960 GATGGAGATCTAATTGAGAGCT 59 8882002 8882083 TTCAGTGTCAACTCCAATCC 59 NA Drosophila melanogaster 50 CG7091 FBgn0038099 FBtr0082692 3 1 1 69 3R 8805870 8805889 TCTTTCCGGATTCTTAGCTC 59 8805977 8805995 ATTCCACTCATCCTTGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 desat1 FBgn0086687 FBtr0082630,FBtr0082628,FBtr0082627,FBtr0082626,FBtr0082629 1 5 5 88 3R 8271987 8272005 GTCGATCTATCCGATCTGC 59 8272118 8272136 ATGATGAAGCAAGCAATCG 58 NA DesignNoJunction Drosophila melanogaster 50 GstD1 FBgn0001149 FBtr0100410,FBtr0082607 1 2 2 68 3R 8194034 8194052 ACTCCCTGTACCCTAAGTG 59 8193984 8194002 TTCCCATGTCGAAGTACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Taf12 FBgn0011290 FBtr0082440,FBtr0082441 1 2 3 73 3R 7504709 7504727 TATCTGGTGGTAGCAAGTC 58 7504583 7504672 TTTGGTAAGCATGGGAGTG 59 NA DesignRelaxed Drosophila melanogaster 50 CG14714 FBgn0037929 FBtr0082422,FBtr0113222 2 2 3 107 3R 7498790 7498808 CAGCCACGAGATTAATGGA 59 7498982 7499000 ATAATGGTACCGGTTCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 pros FBgn0004595 FBtr0089720,FBtr0089718 1 2 3 164 3R 7202939 7203775 TTCTTCTACATTGACACCGA 58 7203901 7217259 TAGAATTCTCGGAAGTTCGA 58 NA Drosophila melanogaster 50 CG31386 FBgn0051386 FBtr0082359 3 1 1 137 3R 7103453 7103472 GATAAAGGTTAGAGGGAAGC 57 7097286 7103354 CAACAATCGCATATTCATGG 57 NA InUTR Drosophila melanogaster 50 CG10703 FBgn0037881 FBtr0082366 2 1 1 90 3R 7054235 7054253 AATGCACGAGAAGATCGAG 59 7054095 7054114 CTTCAGGTACTCCAGATTGG 59 NA DesignNoJunction Drosophila melanogaster 50 Ugt86De FBgn0040255 FBtr0082376 2 1 1 60 3R 6992533 6992551 GCTCATCCAAACGTAAAGC 59 6992491 6992509 TACATTCGACTGTGCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31467 FBgn0051467 FBtr0082320 2 1 1 60 3R 6531998 6532017 AGACCAACGATATGAAACGA 59 6531957 6531976 GCAACAAGCATACGATACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pnn FBgn0037737 FBtr0113210 3 1 2 67 3R 5567627 5567645 GACGATACTGCAATAGACG 57 5567675 5567925 AAAGACTTATCCAACTGCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG9386 FBgn0037708 FBtr0082115 2 1 1 60 3R 5380367 5380386 ACGGTCTGTTAGTTCATGTC 59 5380326 5380346 CTTATATCGTAGCCATACCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11970 FBgn0027503 FBtr0081959 3 1 1 266 3R 4814693 4814784 GATCATTGTGGGCAATACG 58 4815014 4815032 CCAGTTCCTACAGATGTGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG7549 FBgn0037559 FBtr0081825,FBtr0081826,FBtr0110951 3 3 3 86 3R 4085351 4085369 CACCTACAAGCTTCTCCTG 59 4085419 4085508 ATACGTGGAATACCATGCA 58 NA Drosophila melanogaster 50 CG7549 FBgn0037559 FBtr0081825,FBtr0081826,FBtr0110951 2 3 3 86 3R 4085351 4085369 CACCTACAAGCTTCTCCTG 59 4085418 4085508 ATACGTGGAATACCATGCAG 59 NA Drosophila melanogaster 50 CG2698 FBgn0037536 FBtr0081784 1 1 1 80 3R 3828159 3828284 CGTATACGTGCTCATTTCC 58 3828328 3828346 AAGTGGGCACTATTCTCTG 58 NA Drosophila melanogaster 50 CG34384 FBgn0085413 FBtr0112625 1 1 1 80 3R 3662436 3662454 GACGATATCGACCTATCGG 58 3662497 3669468 GGGTGTGATTATCTGAAAGC 58 NA Drosophila melanogaster 50 Ubc84D FBgn0017456 FBtr0081552 1 1 1 60 3R 3344909 3344927 CGCATCGAAATCAACTTCC 59 3344867 3344888 TCTTGAATAGGATCTTTGGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst84Db FBgn0004173 FBtr0081586 1 1 1 124 3R 3191223 3191241 TTTACGGAACCATCATGTG 57 3191117 3191135 AGATCCACAAGGACTACAG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 pb FBgn0051481 FBtr0089279,FBtr0089278,FBtr0089277,FBtr0089276 1 4 4 80 3R 2536680 2537243 ATGATCAGTCCGATAGTAACTC 58 2536621 2536640 TGGAATCGGGTATATCATCG 58 NA Drosophila melanogaster 50 CRMP FBgn0023023 FBtr0114453,FBtr0089685,FBtr0089684,FBtr0089686 2 4 4 82 3R 1404085 1404170 CATAAGTGAGGAGCTCGAC 59 1404215 1404234 AGAATCCAGAAGACTTTCCG 59 NA Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0110932,FBtr0078812,FBtr0078818 1 3 15 135 3R 1129894 1131442 AATACTATTGGTCACGTAGGG 59 1125242 1125260 GAGTCCAAGTCGAATGGAG 59 NA Drosophila melanogaster 50 Hph FBgn0086689 FBtr0078782,FBtr0078781,FBtr0078780 1 3 3 110 3R 1092744 1092852 TGACCAATCAGATTGACTCTG 59 1092985 1093003 GATAACAAGCGACCATTGC 59 NA Drosophila melanogaster 50 CG12163 FBgn0037303 FBtr0078823 1 1 2 159 3R 1065331 1069567 AGAAATATGTCCATCGCAG 57 1064896 1064915 GAGGCTGAGTATACTTTCAC 57 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338 2 5 15 172 3R 110114 120854 TAAGTGCCGTTAAAGGAGG 59 120990 121008 CTTATCGCGAATGTCTTGC 59 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897 2 5 15 193 3R 110111 120843 AATTAAGTGCCGTTAAAGGC 59 120999 121298 GATGTTGTACTTATCGCGA 57 NA DesignRelaxed Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113342 1 1 15 209 3R 114863 114881 ATCTATTCCAAAGCAGGCA 58 120999 121298 GATGTTGTACTTATCGCGA 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 cpx FBgn0041605 FBtr0100499 2 1 15 218 3R 120625 120643 GAATGATAACACGCTAGGC 58 121000 121299 TGATGTTGTACTTATCGCG 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 snoRNA:Psi28S-2622 FBgn0086670 FBtr0091635 2 1 1 77 3L 1488921 1488940 CAGTTTGTTGCAATTTGACG 59 1488975 1488998 CCTATGATTATCCGGAAGTATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12460 FBgn0040045 FBtr0111161 1 1 1 212 3L 24527970 24527988 GATCCAGGATTCAGAGGTC 58 24528267 24528317 AGATTTCTCACCATTCGCA 59 NA DesignRelaxed Drosophila melanogaster 50 CG17698 FBgn0040056 FBtr0111168,FBtr0111167 2 2 3 163 3L 23734173 23739296 CAAATTGGACAGGGATCCT 59 23739421 23739441 CTGTAAACTCGATCTAGAGGT 58 NA Drosophila melanogaster 50 CG40294 FBgn0058294 FBtr0111150 1 1 1 60 3L 23573571 23573590 AATAGAAACTCTTCCGAACG 57 23573530 23573551 CCAGGTGGAATAGAATAATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33217 FBgn0053217 FBtr0070045 2 1 1 92 3L 23119449 23119468 TGCAAATTACCTGAGTTGTG 58 23119839 23119857 TGACACATTACCGTCACTC 59 NA DesignNoJunction Drosophila melanogaster 50 jim FBgn0027339 FBtr0078581 3 1 3 100 3L 22789580 22790217 GGCAAATTTCGCAAATTCG 59 22789498 22789518 TAAGTTGGAGGATTGATACGC 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 mael FBgn0016034 FBtr0089631,FBtr0089633,FBtr0089632 1 3 3 117 3L 22718019 22718093 GATGTCCCATGATCTGGAG 59 22718174 22718192 CAACGAATATTCGCATGCC 59 NA Drosophila melanogaster 50 CG11425 FBgn0037167 FBtr0078507 2 1 1 71 3L 22467998 22468016 ACTTATTGTCCTGGTGGAG 58 22468051 22468069 TCATCACAGAAGAAACCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CS-2 FBgn0029091 FBtr0078476,FBtr0114557 1 2 2 80 3L 21955811 21955832 CTTGATTTATCTCTACATGGCC 58 21955873 21955949 CGGAGTACTGGATACTTGC 59 NA Drosophila melanogaster 50 CG10510 FBgn0037059 FBtr0078310 2 1 1 157 3L 21201835 21201908 AGTTGACCAAGCAAATGGA 59 21201696 21201716 CAGCTTGAAGTATTCATCGAC 59 NA Drosophila melanogaster 50 Mst77F FBgn0000093 FBtr0078270 2 1 1 60 3L 20810755 20810775 CTCGAATAACGAGATAAGACG 58 20810715 20810733 ATGACGGAATGACATTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4365 FBgn0037024 FBtr0078254,FBtr0078253,FBtr0078252 3 3 3 67 3L 20792308 20792326 GGCATGGAGATCAAGATCC 59 20792356 20792375 GTCTTCGTGTCTACAATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rdgC FBgn0004366 FBtr0074834,FBtr0074833,FBtr0074835 3 3 4 125 3L 20253973 20253993 GCAATCTTCATCCAGAAATGG 59 20254080 20254321 TTTGTATAGCTCAGCCTGG 59 NA Drosophila melanogaster 50 CG7757 FBgn0036915 FBtr0074891,FBtr0074892 2 2 2 60 3L 19904084 19904102 GATTCTGGACGATGAAGGA 58 19904124 19904144 CGTGGGAATATTAATGGTACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Paps FBgn0020389 FBtr0111108,FBtr0074886,FBtr0074889,FBtr0074887,FBtr0074888,FBtr0074885 2 6 6 94 3L 19853427 19853509 TAGACAGCATGGAGATCCT 59 19853566 19853585 AAACTCATCCTTCCTCTTGG 59 NA Drosophila melanogaster 50 Fibp FBgn0036911 FBtr0089595,FBtr0089596,FBtr0089594 2 3 3 98 3L 19809913 19809982 TATACTTACCAGCACACTGG 58 19809834 19809852 TTCCTTGTCGAGTAGACAG 58 NA Drosophila melanogaster 50 CG9392 FBgn0036895 FBtr0074948 3 1 1 60 3L 19614225 19614244 GACGAACACAAACTACTGGA 59 19614267 19614285 TTCTCTTGATCCGCTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9330 FBgn0036888 FBtr0074940 2 1 1 92 3L 19580839 19580857 GTAGTTTCTCACGATCGCA 59 19580911 19580990 ATAGTTTCCCTTGTATGCCTC 59 NA Drosophila melanogaster 50 Shal FBgn0005564 FBtr0074973 1 1 2 88 3L 19565448 19565466 GGATGACAACTATCGGGAC 59 19565167 19565397 AATGTTGCTACATCGTTGTC 58 NA InUTR Drosophila melanogaster 50 CG9300 FBgn0036886 FBtr0074938 1 1 1 81 3L 19546341 19546441 GACCATTTGGTCTGATAAACG 59 19546484 19546502 AGATACGAATTGTCCAGGG 58 NA Drosophila melanogaster 50 CG14084 FBgn0036855 FBtr0074990,FBtr0074989 2 2 2 61 3L 19255134 19255152 AATGTGCTACATGTTCCTC 57 19255176 19255195 ACTTTAGGGTTATCCAGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6893 FBgn0036807 FBtr0114373 1 1 1 62 3L 18687656 18687674 TTCAAATCTCCAACAGGCA 59 18687877 18687898 GCACTTAATCCATCGTATAGTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG6897 FBgn0036800 FBtr0075108 1 1 1 60 3L 18616447 18616466 AGCGCATAATACTCAATTGC 59 18616489 18616507 ATCCTTCGCGACTTATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9669 FBgn0036667 FBtr0075339 2 1 1 62 3L 16837870 16837888 TCATCGGAACCTTCTTCAC 59 16837826 16837845 CCTTAGAGCTCTTTCGAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32158 FBgn0052158 FBtr0075407,FBtr0113426 1 2 7 81 3L 16513216 16513234 CAAACATTATCGACGCCTC 58 16511681 16513171 CTCTCGCATCCTGTATCTG 59 NA Drosophila melanogaster 50 CG4573 FBgn0036629 FBtr0075411 3 1 1 88 3L 16409019 16409037 GTTTGTCTGGGAATGAGAG 57 16408889 16408967 ATCTAAGTTGGAGTGTTGC 57 NA Drosophila melanogaster 50 Mbs FBgn0005536 FBtr0112852 1 1 6 80 3L 16058524 16059132 ATGTATTACAGGAAACCGACC 59 16059174 16059192 CTGTACAGTTGTCGATGGA 59 NA Drosophila melanogaster 50 Arf72A FBgn0000115 FBtr0075517 2 1 1 61 3L 15976685 15976974 CAAGTATTAGACCTTATTGGCG 58 15976996 15977014 CACCACATAGATGATTGCG 58 NA DesignRelaxed Drosophila melanogaster 50 Pka-C3 FBgn0000489 FBtr0075529,FBtr0075528 3 2 2 86 3L 15921444 15921463 TGATCTTCGACTATGTCTGC 59 15921312 15921397 CATAGAAGTTGGAGGTTTGAC 58 NA Drosophila melanogaster 50 CG7304 FBgn0036527 FBtr0075577,FBtr0075576 1 2 2 60 3L 15673481 15673501 CATTACTTGATACCATTGCGG 59 15673520 15673541 AGATTATCAAGAATGGGAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6876 FBgn0036487 FBtr0075642 3 1 1 245 3L 15153548 15153625 TTTCGGAGACATCGAAGAG 59 15153834 15153852 ATCTCTAGACCTTGCAGTG 58 NA DesignRelaxed Drosophila melanogaster 50 nan FBgn0036414 FBtr0089524 1 1 1 174 3L 14179634 14179711 CGGTTGAATATGACTGAGGA 59 14179479 14179497 TGTTATCGGAACATTCCGA 58 NA Drosophila melanogaster 50 CG33263 FBgn0053263 FBtr0075859 1 1 1 60 3L 13416904 13416922 CTGATTACGCCTCTACAGG 59 13416862 13416882 GTTGTTGTAGAATCAGCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF-2beta FBgn0004926 FBtr0075968 1 1 1 193 3L 12518773 12519099 AGACAAAGAGAACGACGAG 59 12518598 12518616 CAAAGGAGGTCTTCTTGGT 59 NA Drosophila melanogaster 50 CG17153 FBgn0036248 FBtr0075992 1 1 1 116 3L 12111945 12111963 TGAAGTCACTGGGTTTCAC 59 12112103 12112121 ATTCCCACTGGGATTTGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG17154 FBgn0036246 FBtr0075990 1 1 1 60 3L 12082045 12082064 CCAAGCTAACGATATACGTG 58 12082087 12082105 TGTATGCCCAATAGCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14126 FBgn0036223 FBtr0076068 2 1 1 60 3L 11929689 11929707 CTCCACTTTCTATCCAGCT 58 11929647 11929665 GGAAATGCCTGTGTATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11660 FBgn0036187 FBtr0076135,FBtr0076134 1 2 2 106 3L 11639975 11639993 CAGAACACCTACATTCCCA 58 11639826 11639845 GTGATCTTTCCGTAGATGAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG34356 FBgn0085385 FBtr0112566 2 1 1 81 3L 9939057 9939075 CAAGGAGACCATAACGGAG 59 9939118 9939250 ATAGATTTGTAGTATCCGCGG 59 NA Drosophila melanogaster 50 CG14180 FBgn0036003 FBtr0076467 3 1 1 75 3L 9467170 9467189 TAAACAAGATCTATGTCGCC 57 9467290 9467308 TTATAGCTCTCCATGCCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG3437 FBgn0035998 FBtr0076474 2 1 1 89 3L 9449927 9449945 TATAGAGTGCTCATGGGTG 58 9449771 9449876 CAACAAACTCCTCCTTATCAC 58 NA Drosophila melanogaster 50 CG4911 FBgn0035959 FBtr0076542 1 1 1 100 3L 9063736 9063814 CTACAATGAAGAGATAAGCACC 58 9063657 9063675 GATCGCGTAAATCGTTGTC 59 NA Drosophila melanogaster 50 Cp15 FBgn0000355 FBtr0076572 3 1 1 156 3L 8721893 8721911 GAGGGTAATGGAGGAAGTG 59 8722030 8722049 AGAATTAGTAAGCACGTTGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG32352 FBgn0052352 FBtr0076628,FBtr0076629,FBtr0076630 3 3 3 189 3L 8581743 8581761 GACATCAGTCCAGATCTGC 59 8581912 8586580 CGTATTCATGATCACTCTCGT 59 NA Drosophila melanogaster 50 CG32352 FBgn0052352 FBtr0076628,FBtr0076629,FBtr0076630 3 3 3 189 3L 8581743 8581761 GACATCAGTCCAGATCTGC 59 8581912 8586580 CGTATTCATGATCACTCTCGT 59 NA Drosophila melanogaster 50 CG7066 FBgn0035869 FBtr0076707 3 1 1 66 3L 8298022 8298040 GAAATTGTTGTTCCTGGCC 59 8298122 8298141 TATAGTCGCATCTAGACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 Ect4 FBgn0085402 FBtr0112601 3 1 5 151 3L 8072730 8086167 CAGCATTATCAGATGACAGAC 58 8086280 8086298 AAGGTTGTTGGAGTTAGGG 59 NA Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780 3 8 8 128 3L 7811268 7811288 CCAGATGACAAATACAAGGAG 58 7810754 7811178 GTCGGCATATTGTGTTACC 58 NA Drosophila melanogaster 50 CG32369 FBgn0052369 FBtr0076784,FBtr0076783 2 2 2 256 3L 7772127 7772145 CCAAGGTGGAGTACATCTG 59 7771828 7771908 AATGTCCACCTTTAGTTGCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG33277 FBgn0053277 FBtr0089852 3 1 1 86 3L 7438805 7438823 AGTTCACCAATCCATTCGA 58 7438870 7441176 CCATGTTGACATCTAATGTCTG 59 NA Drosophila melanogaster 50 CG10107 FBgn0035713 FBtr0076952,FBtr0076950 2 2 3 86 3L 6741017 6741036 GAAATCTCCACGAACTTTCC 58 6740081 6740970 GGGAGAAATCTTTGTACAAGG 58 NA Drosophila melanogaster 50 sfl FBgn0020251 FBtr0076968 1 1 1 80 3L 6540630 6540648 TAAATGCCTCGGAAAGTCC 59 6540691 6541795 AGATAGTATCGCTGCAACAG 59 NA Drosophila melanogaster 50 Bj1 FBgn0002638 FBtr0077075 3 1 3 113 3L 5925537 5925555 CTAGACAACGTGGAACTCC 59 5925354 5925373 TATTAGTCAGGGCCTTTCTG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15014 FBgn0035532 FBtr0073340 1 1 1 60 3L 4321270 4321289 TGAATCTTCAGAAGAGTCCA 57 4321229 4321248 GTCATTCTCAGTAGAGTCCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1273 FBgn0035522 FBtr0073231 1 1 1 107 3L 4274083 4274164 CAATCTGGAGGATCCTGTC 59 4274235 4274253 TTCTGTTTGTAGGTGGTGG 59 NA Drosophila melanogaster 50 CG14990 FBgn0035496 FBtr0073208 3 1 1 60 3L 4093953 4093972 CAGGATCAGTTGAGAAACAC 58 4093995 4094013 ATATCAGACTAGCAGGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr64e FBgn0045476 FBtr0073199,FBtr0073200 2 2 2 60 3L 4034505 4034525 CAGCACATTAACATGATCACC 59 4034547 4034625 TCATAATGTGCTCCACCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG11594 FBgn0035484 FBtr0073283,FBtr0073285,FBtr0073284 1 3 3 74 3L 4023587 4023605 GAGGAACTGAATCTCTGGC 59 4023473 4023491 CAATAATGTGACGTGTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG12016 FBgn0035436 FBtr0073063,FBtr0073064 1 2 2 60 3L 3321534 3321552 ATCGCCAAAGAGAAGATCC 59 3321576 3321594 GCTCCTTGAAGTAGTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1246 FBgn0035360 FBtr0072938 3 1 1 89 3L 2648583 2648670 ATTGTCATACTCGTCCAGG 58 2648723 2648741 GAAATCAGTAACGCCATCC 58 NA Drosophila melanogaster 50 CG32295 FBgn0052295 FBtr0072962 2 1 1 60 3L 2526089 2526107 ATAGTCAGAAGTCACCCGA 59 2526047 2526067 CGAATAAGCTCCATCAAATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33232 FBgn0035347 FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920 1 4 4 80 3L 2495895 2495913 GAGTACACCGAAATGAGGT 58 2495954 2496034 GTTGGCATTATGACCATATGAC 59 NA Drosophila melanogaster 50 CG15822 FBgn0035308 FBtr0072917,FBtr0114630 2 2 2 76 3L 2157416 2157434 CAACATCCACGAGATTCAG 58 2157127 2157376 CATAGTGGTAGATGCTCCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13937 FBgn0035287 FBtr0072863,FBtr0072861,FBtr0072862 1 3 3 113 3L 1877653 1877770 ACATTATCTGGTGCAATGTC 58 1877559 1877577 TGAGAAGGATCTTCTTGGT 57 NA Nonspecific Drosophila melanogaster 50 Sac1 FBgn0035195 FBtr0072652 2 1 1 60 3L 1249346 1249364 CATACTCATCGATCGCCTC 59 1249387 1249406 GTCGAAGACATGATAGACAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Glut1 FBgn0025593 FBtr0072615 1 1 6 88 3L 972395 973835 GTTTCCAGTGTCCAATTTGAG 59 973884 973903 GTTGTGTAGACGTTGTTGTG 59 NA Drosophila melanogaster 50 miple FBgn0027111 FBtr0072505,FBtr0072504 1 2 2 148 3L 268950 269104 CAAAGATAAAGCTGCTCGC 59 269216 269234 ACAGTTAACGTCGTTACGA 58 NA InUTR Drosophila melanogaster 50 bs FBgn0004101 FBtr0072271 2 1 1 203 2R 20235972 20262944 GAGGACTCGAAAGATGACC 59 20263111 20263129 CTGATAGTTCAATGCTGGC 58 NA DesignRelaxed Drosophila melanogaster 50 CG13576 FBgn0034994 FBtr0072274 1 1 1 60 2R 20138194 20138212 AGTTGCTCTTCTCTATGCC 59 20138152 20138172 GTAGTAATCATTGACCAGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dat FBgn0019643 FBtr0072255,FBtr0072254 1 2 2 157 2R 20043491 20044428 TTTCTTCAAGGATGAACCG 57 20044548 20044567 GCCTCATAAGTCCATTTAGG 57 NA Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 3 8 8 81 2R 19817553 19817571 GGATATCATGGAGAAGCCC 59 19817426 19817508 TCCAATAGCCATGTAACGG 59 NA Drosophila melanogaster 50 CG17664 FBgn0034883 FBtr0072107,FBtr0072108 3 2 2 66 2R 19491541 19491559 TATGAATCCAGTCCGATCC 58 19491493 19491511 GTAGATCCAGTGGTCATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30185 FBgn0050185 FBtr0072060 3 1 1 126 2R 19432068 19432159 GATCTTGTGAAATCCCTTTCG 59 19432247 19432265 AGATGGTGGTGAAGTTCAG 59 NA DesignRelaxed Drosophila melanogaster 50 Gmer FBgn0034794 FBtr0071905 2 1 1 121 2R 18775457 18775475 GAACTACGAAAGTGTGGAG 57 18775298 18775316 TATCACAGACCAGTCTTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG30270 FBgn0061435 FBtr0089763,FBtr0089762 1 2 2 60 2R 18672276 18672295 TTCTTTGGCCAGTATTACGA 59 18672318 18672336 AATCGTAGGAATGTGGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3746 FBgn0034755 FBtr0071929 1 1 1 223 2R 18536840 18536922 TGCTATCCTGCATCTTTCC 59 18536635 18536656 GTCTTTAATTGAGTTAGACGCG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Cdk9 FBgn0019949 FBtr0071937 3 1 1 151 2R 18524375 18524461 ATCCACAGCAACAAGATCC 59 18524242 18524260 ACTACGCGATTGGTATAGC 59 NA Drosophila melanogaster 50 wdp FBgn0034718 FBtr0071851 3 1 4 176 2R 18198687 18198706 CGAATAATACGTACTCACGC 58 18188505 18195724 GGCGTCTTATCTTCTATAAGAC 57 NA InUTR Drosophila melanogaster 50 HmgD FBgn0004362 FBtr0071708,FBtr0071709 1 2 2 201 2R 17603110 17603202 GAAGGACAAGTCTGAGTGG 59 17603367 17603385 CTACTCGCTCTCATCATCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG15649 FBgn0034563 FBtr0071555 3 1 1 140 2R 16860891 16860972 GTACTACGAGAAGAACGGA 58 16860769 16860787 TAGTTCACATTGTGTTCCC 57 NA Nonspecific Drosophila melanogaster 50 CG9993 FBgn0034553 FBtr0071560 1 1 1 169 2R 16738962 16738980 CTGCACTGGATACGATGAG 59 16738691 16738709 TATCCGAGGTAAAGAGCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15225 FBgn0034551 FBtr0071513 2 1 1 175 2R 16680750 16680768 CAAGAAATCCAAGACGACC 58 16680907 16680925 CACTATGTCCACCATGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fem-1 FBgn0034542 FBtr0086245,FBtr0086246 2 2 2 83 2R 16551360 16551447 GCAATAATGTATCGGTAGATCG 58 16551298 16551317 TAAGATTGTGGTTCTCCACC 59 NA Drosophila melanogaster 50 CG11055 FBgn0034491 FBtr0086271,FBtr0086270,FBtr0086272 3 3 3 141 2R 16148062 16148142 CTTACACTTAACATGGACCC 57 16148245 16148324 CTTCGTTGGATAACATTGTG 57 NA DesignRelaxed Drosophila melanogaster 50 CG34198 FBgn0085227 FBtr0112391 2 1 1 88 2R 15570292 15570310 CCAAGGATAACAGTTGCTG 58 15570222 15570240 CTTTCACATGATGGTGCAG 59 NA Nonspecific, DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Jheh1 FBgn0010053 FBtr0086625 3 1 1 86 2R 14742094 14742112 TTCACCACCGATATTCAGG 59 14741972 14741991 CGGATAGTGTTTCTTACCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG5742 FBgn0034304 FBtr0086780 2 1 1 61 2R 14037960 14037978 CTGCGATACGAGGAATCAG 59 14037917 14037936 AGTATATCGGTCGACATGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 olf186-F FBgn0041585 FBtr0086796,FBtr0086797,FBtr0086795 1 3 5 78 2R 13738637 13738655 TAGAGACGCCAACAAAGTC 59 13738697 13738715 TTTCCAGTGGTGATCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14482 FBgn0034245 FBtr0086905 1 1 1 60 2R 13459966 13459984 TGCTTTACTACACCGACTG 59 13459924 13459942 AACTTGGATCCGTAGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4847 FBgn0034229 FBtr0086937,FBtr0086934,FBtr0086933 3 3 5 199 2R 13400212 13400290 GACTTCTTGAGCCAATCTG 58 13400453 13400471 TTCAGACCGGTCAATTGAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG30104 FBgn0050104 FBtr0086928,FBtr0086927 1 2 2 84 2R 13378862 13378939 GATGCTATATCCTTGGGCA 58 13378987 13379005 GTACAGGAAAGGTGACCTC 59 NA Drosophila melanogaster 50 ProsMA5 FBgn0016697 FBtr0086910 2 1 2 81 2R 13300522 13300540 CAGCAATTGGAATTTGCAC 58 13300643 13300661 GTACTGGGTACCATTAGCG 59 NA DesignNoJunction Drosophila melanogaster 50 Sply FBgn0010591 FBtr0087008,FBtr0087007 2 2 2 192 2R 12976443 12976520 TTTCCATCTGGTATCCACC 58 12976269 12976287 GAGTCACTTCTCCGATCAC 59 NA Drosophila melanogaster 50 Ark FBgn0024252 FBtr0086968 1 1 2 81 2R 12913113 12913133 CAAGATCAGCTATTTGGTAGC 58 12913176 12913258 GGCAAAGAGCTCTAAAGTG 58 NA Drosophila melanogaster 50 CG30099 FBgn0050099 FBtr0087180 1 1 1 76 2R 12176406 12176425 GCCTCAACTGGTATTTACTC 57 12176349 12176367 TCCATTCGTGAACTTTCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fidipidine FBgn0025519 FBtr0087185 1 1 1 93 2R 12151724 12151742 GTATGACTTGGTGCATCGA 59 12151588 12151667 ACCAAGGCAATCTTCTGTC 59 NA Drosophila melanogaster 50 shark FBgn0015295 FBtr0087244 3 1 1 176 2R 12089207 12089225 AACCTGAAGTAGACACCTC 58 12088995 12089067 TGTACAGAAACTTGGACCC 59 NA Drosophila melanogaster 50 spin FBgn0086676 FBtr0089592,FBtr0089591 1 2 5 80 2R 12020077 12020098 GACCTTCCTTCATCTATCTAGG 58 12020138 12020350 CAAACTTGTACGAGATGTCG 58 NA Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 3 5 7 82 2R 11836642 11836721 TTTGCTACGTGCTACTCTC 59 11836578 11836599 ATCCGCTCTAGTTATATTCGAG 59 NA Drosophila melanogaster 50 l(2)k05713 FBgn0022160 FBtr0087308,FBtr0087307,FBtr0112900,FBtr0087309 3 4 4 112 2R 11745506 11745703 TACCTTCAGATGATGTCGG 58 11745412 11745430 CTGATCTGCTTCAGATTGG 57 NA Drosophila melanogaster 50 CG30080 FBgn0050080 FBtr0087319 2 1 1 87 2R 11588822 11588896 ATTCTCCTAATGGCGATTGG 59 11588754 11588774 CTAACTGGGAAATTCGTTGAG 58 NA Drosophila melanogaster 50 CG8204 FBgn0034033 FBtr0087349 3 1 1 114 2R 11461025 11461043 GACTGAAGTTGGCTACCAG 59 11460871 11460889 CAAATTACGCAGTTCCTGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG7639 FBgn0033989 FBtr0087423,FBtr0087424 3 2 2 80 2R 10876490 10876508 GGCCAATGATCTACAACTG 58 10876367 10876446 CTGAAAGACATTTCAGGCC 58 NA Drosophila melanogaster 50 Ciao1 FBgn0033972 FBtr0087460 1 1 1 61 2R 10741540 10741558 GATCAGGACGTAAACTCGG 59 10741497 10741515 CTGCATGATATCAGTTGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ave FBgn0050476 FBtr0087439 3 1 1 68 2R 10640217 10640235 ATACACCCAGTATGAGCAG 58 10640470 10640488 TCTGTGATCCGGAGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpn6 FBgn0028689 FBtr0087474 3 1 2 130 2R 10639321 10639339 CCGATCTCATCAAGGTGAC 59 10639145 10639228 ACACAATTGAACCTCAATGC 59 NA Drosophila melanogaster 50 CG34379 FBgn0085408 FBtr0112614 2 1 3 117 2R 10203028 10213362 GTTCTGTACAGGATGACCT 58 10213443 10213461 TTATTGTACTCCTCGAGGC 58 NA Drosophila melanogaster 50 CG13334 FBgn0033856 FBtr0087677 2 1 1 60 2R 9446559 9446577 TTATCATCTCAAATCCCGC 57 9446600 9446619 GGTAGATTGGTTATTCGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cid FBgn0040477 FBtr0087667 3 1 1 75 2R 9373775 9373793 GACTCCTACATGCTAACCA 58 9373832 9373850 AGATGTAGGCCATCAATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cnn FBgn0013765 FBtr0100656,FBtr0087704 2 2 5 139 2R 9334702 9334723 TCGATCTACCTCACTAAATCAC 59 9332635 9333062 AACTGGCATATGAGTTCTCC 59 NA Drosophila melanogaster 50 CG17050 FBgn0033831 FBtr0087719 2 1 1 90 2R 9277947 9278040 TGATGTTTCAGGCTTTGGA 59 9277875 9277895 GCAGAGGTATACAATTCTTCG 58 NA Drosophila melanogaster 50 seq FBgn0028991 FBtr0100501 3 1 1 107 2R 9072345 9072363 TCATATCAAACTACGGCCA 58 9070714 9070733 CGAACTAATAGTTGTGACCA 57 NA DesignNoJunction Drosophila melanogaster 50 mRpL18 FBgn0026741 FBtr0087852 1 1 1 77 2R 8644140 8644158 GAATACGTGATCAACCGGA 59 8644199 8644217 CTCCAGATGATAGCCTACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8776 FBgn0033764 FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869 1 5 5 104 2R 8548250 8548271 CATAAGGTCAACTTCTATAGCC 58 8548111 8548185 CAGCATTACCAGAAAGCTG 58 NA Drosophila melanogaster 50 CG8776 FBgn0033764 FBtr0087868,FBtr0087870,FBtr0087867,FBtr0087866,FBtr0087869 1 5 5 104 2R 8548250 8548271 CATAAGGTCAACTTCTATAGCC 58 8548111 8548185 CAGCATTACCAGAAAGCTG 58 NA Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835 1 6 8 107 2R 8504611 8504629 GCATATTTACCCACTGAGC 58 8504697 8505312 GACGTCTACCATTCTAAATCTG 58 NA Drosophila melanogaster 50 Cyp301a1 FBgn0033753 FBtr0087824 2 1 1 81 2R 8455035 8455055 GTTTGGTCAAGTACAAGAGTG 59 8455098 8455170 CAAGGCTCTCCATGTACTC 59 NA Drosophila melanogaster 50 CG30051 FBgn0050051 FBtr0114521 3 1 1 95 2R 8323930 8324023 CTTCCTAGTACTGTTGCTG 57 8324082 8324100 TCGAAGTATTGTTGTCTGG 57 NA Drosophila melanogaster 50 CG13162 FBgn0033718 FBtr0087904 2 1 1 60 2R 8238057 8238076 CAACACATCTTAAAGTGCGA 58 8238099 8238117 AATACCTCCCAGAATCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rep3 FBgn0028407 FBtr0087980,FBtr0087979 3 2 2 127 2R 7943777 7943795 GGATAGCATCACCTTGGAG 59 7943884 7949025 TGATGTCCTTGATCTTGAAGG 59 NA Drosophila melanogaster 50 CG34231 FBgn0085260 FBtr0112424 3 1 1 103 2R 7873773 7873791 TACAGTTGCTAGTGAGTCC 58 7873858 7873977 CTTCCAGATCCACAAATCC 57 NA Drosophila melanogaster 50 wal FBgn0010516 FBtr0088082,FBtr0088083 1 2 2 120 2R 7578024 7578042 TACTCAATCCGATCACCCT 59 7577365 7577383 CCATCCACCTTGGAAAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12384 FBgn0033624 FBtr0088155 2 1 1 195 2R 7245772 7245854 GTACTGGACTGACACAACC 59 7245595 7245614 TAATAGTTATTCCGCCCGAG 59 NA InUTR Drosophila melanogaster 50 Syx6 FBgn0037084 FBtr0088104,FBtr0088103 3 2 3 129 2R 7108119 7108443 CACTATCAGCATCGTTGAG 57 7108535 7108554 GTTCAGGCTCATCTTATCCT 58 NA Drosophila melanogaster 50 psq FBgn0004399 FBtr0100608,FBtr0088275,FBtr0088279,FBtr0088282,FBtr0100605,FBtr0100607,FBtr0088276,FBtr0088277,FBtr0088280,FBtr0088278,FBtr0088281,FBtr0100606 1 12 12 88 2R 6499952 6500255 GCATATGGACATGTATAACTCG 58 6500304 6500322 TATAGTGCGGTTCCTTCTG 58 NA Drosophila melanogaster 50 cbx FBgn0011241 FBtr0088453,FBtr0088452 1 2 2 228 2R 5752729 5752809 ATGCTAACTCCTTGCAGTG 59 5752465 5752483 CAAAGGTGATCCTCTCCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG1623 FBgn0033448 FBtr0088486,FBtr0113061,FBtr0088490,FBtr0088487 1 4 4 69 2R 5716115 5716133 GAACTACGAACCCAAGACC 59 5716064 5716082 ATCCGGATACTTGTTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lectin-46Ca FBgn0040093 FBtr0088476 1 1 1 60 2R 5705269 5705287 GCTTCAAGTACATCAGCAG 58 5705311 5705329 TCCACAATATTGGAGTCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30002 FBgn0050002 FBtr0088466 3 1 1 156 2R 5592562 5592655 CTTTAAAGATCACATACGACCC 58 5592769 5592790 CTCAGTTCTTATATCCACCTCC 59 NA Drosophila melanogaster 50 stmA FBgn0086784 FBtr0088715,FBtr0100111,FBtr0088716 2 3 3 113 2R 4618186 4618264 TTTATCCTCGGAATCCAGC 59 4618091 4618109 ACTAACACGCGAGATTAGC 59 NA Drosophila melanogaster 50 CG2121 FBgn0033289 FBtr0088764 1 1 1 81 2R 4285172 4285190 CAACTCCATCTTCCTCACC 59 4284851 4285127 TACTCCATAGCGTTTGAGG 58 NA Drosophila melanogaster 50 CG11210 FBgn0033259 FBtr0088781 1 1 1 92 2R 3987897 3987915 CTATACGTAAGGAACGCCG 59 3987968 3988047 TGGTTTAACCATGAGAGTATCC 59 NA Drosophila melanogaster 50 CG34430 FBgn0085459 FBtr0112731 2 1 1 91 2R 3831378 3831397 ACTTAATTTGGTGGAGACAC 57 3831630 3831648 GCTTCTGGGAGGAATACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG30492 FBgn0050492 FBtr0088917 1 1 6 131 2R 3525868 3526111 GTGAAATTAGATCTGCCGG 58 3526206 3526224 GATGGTCTCGATGAGACTG 59 NA Drosophila melanogaster 50 didum FBgn0015933 FBtr0089745,FBtr0089744,FBtr0089743 1 3 3 120 2R 3389124 3389142 CTACTGGAGAAGTCACGTG 59 3389226 3389309 ATTTGTCCTGGTGATCCAG 59 NA Drosophila melanogaster 50 Tsp42Ee FBgn0029506 FBtr0086180 3 1 1 82 2R 2905065 2905084 CGTCGAATTAATGACCACTG 59 2905129 2905210 AGATAAAGCCGATCAGCTC 59 NA Drosophila melanogaster 50 cta FBgn0000384 FBtr0111126 2 1 1 88 2L 22883614 22883690 CGTTATAAGAGGTATGCAAGTC 58 22883738 22883757 CATAAGCATCCTGTTCTCTG 58 NA Drosophila melanogaster 50 CG17490 FBgn0040009 FBtr0111256,FBtr0111258 2 2 4 180 2L 22433045 22440281 CATACAATAATGAGAAGGTGGG 58 22440422 22440440 CTCATATAGTCAGCGGGTG 59 NA InUTR Drosophila melanogaster 50 CG5922 FBgn0032983 FBtr0085962 3 1 1 62 2L 22213547 22213566 TTTAAAGGTCGTACCTTTCG 57 22213428 22213447 GAAGCTGTTATTGCAATACG 57 NA DesignNoJunction Drosophila melanogaster 50 CG11630 FBgn0032964 FBtr0085909 2 1 1 60 2L 21782663 21782681 AGTAACAATCGTCGTCTGG 59 21782621 21782640 TAGGTAAGTTCTGGAGAGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His2B:CG33892 FBgn0053892 FBtr0091896 1 1 1 61 2L 21477940 21477958 AAGAACATCACCAAGACCG 59 21477897 21477915 TAGATGGCATAGCTCTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 crc FBgn0000370 FBtr0081512 3 1 3 89 2L 21312193 21318132 GACCTGAAAGATGAAGAATGTC 59 21318181 21318200 ATTAATGTTCGGCTGAAAGC 59 NA Drosophila melanogaster 50 Mio FBgn0032940 FBtr0081524,FBtr0081527,FBtr0081528,FBtr0081526,FBtr0081525 3 5 5 84 2L 21286543 21286562 TAGTCTTGATGAGCTACGTC 58 21286415 21286496 ATTTGTAACAGCTGGACGA 59 NA Drosophila melanogaster 50 CheB38c FBgn0032888 FBtr0081452 3 1 1 86 2L 20820404 20820422 GATCCAAGAGAAGTGCCTC 59 20820275 20820294 CCCAACACGTTATTTAGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 ik2 FBgn0086657 FBtr0081390 3 1 2 120 2L 20677376 20677394 ATTGACAACTTCCGAGAGC 59 20677477 20677552 ATGCTTTAGCTATCGTTCGT 59 NA Drosophila melanogaster 50 spir FBgn0003475 FBtr0081353,FBtr0081352 2 2 4 148 2L 20334709 20334730 AGAACTAGAGCACATAATCGAG 59 20336395 20336472 CACCTGCTTCATTGTTCAG 59 NA Drosophila melanogaster 50 CdGAPr FBgn0032821 FBtr0081318 1 1 1 80 2L 19778935 19779025 GACAGAACATCAACAACCAC 59 19778874 19778893 GGTTAAGGTCCAAGGATAGC 59 NA Drosophila melanogaster 50 CG18397 FBgn0032723 FBtr0081193 1 1 1 82 2L 18940624 18940702 AAACCGTAGTGGAATCCTG 59 18940560 18940578 TATGGTCTTGGAGAACTCG 58 NA Drosophila melanogaster 50 CG10343 FBgn0032703 FBtr0081098 1 1 1 90 2L 18703829 18703919 TAGGAATCTACTGCCAGCT 59 18703973 18703991 GGTATAGGTCATGCCACAG 59 NA Drosophila melanogaster 50 CG15161 FBgn0032692 FBtr0081078 3 1 1 60 2L 18614732 18614751 TAGAGAAGTGGATCACTGAG 57 18614691 18614710 TGGACATCGTACATTGACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5758 FBgn0032666 FBtr0081036,FBtr0081035,FBtr0081037 2 3 3 80 2L 18127999 18128020 GCAATCAGGTGTTCATTATCTC 59 18128061 18128143 TATCCTTGTGCATCTGGTG 59 NA Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080898,FBtr0080895,FBtr0080903,FBtr0080902,FBtr0080896,FBtr0080904,FBtr0080899,FBtr0080900 1 8 13 87 2L 16779835 16780559 GTAACACAAAGGTGTTCTTCC 59 16780608 16780626 ATCCAGGACATGATCTTGC 59 NA Drosophila melanogaster 50 squ FBgn0002652 FBtr0080887 3 1 1 116 2L 16680587 16680605 AACTTGTTGACAGTGTAGC 57 16680740 16680758 CCAGATCATCCTCGAACTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 grp FBgn0011598 FBtr0080886,FBtr0080884,FBtr0080885 2 3 4 112 2L 16692023 16692042 AGGATAAGCATATCCTCCGA 59 16692117 16696595 CACGTCTGGTTCTATTCGA 59 NA Drosophila melanogaster 50 CG31820 FBgn0051820 FBtr0080807 3 1 1 66 2L 16006057 16006075 GTGGATCGGTATCCTATGC 59 16006009 16006028 TTATAGTTCATGGCTGGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)35Di FBgn0001989 FBtr0080772 3 1 2 61 2L 15750554 15750575 CCTACTACTTCAAGTACAACCA 59 15750514 15750535 GTAATAGCCAACTTGAATCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16815 FBgn0032491 FBtr0080447 2 1 1 60 2L 13229807 13229826 CAGGATATCAATCTCGAAGC 57 13229849 13229867 TGATGATGTGACTCGTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31856 FBgn0051856 FBtr0080424 1 1 1 60 2L 13071767 13071788 CATCGGTATCATTATCTTCGTC 58 13071728 13071746 GGAAATGTCATTTGAGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090015,FBtr0090014 2 2 17 197 2L 12726933 12726951 TATATCAAGAGCGTTGGCA 58 12727111 12729944 ATATTTGGATAGCACTTGGC 58 NA Drosophila melanogaster 50 Ca-beta FBgn0015608 FBtr0080217,FBtr0080220,FBtr0080219 2 3 4 131 2L 11163326 11163344 AACCTCTCCGTTCAAATGG 59 11163090 11163233 CCAATACGTCTCCAAGTACTC 59 NA Drosophila melanogaster 50 CG31867 FBgn0051867 FBtr0080224 3 1 1 60 2L 11144876 11144896 TGGATATACCTGCTAATCCTG 58 11144836 11144856 GAAGATTGAGTCTCACAACAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nos FBgn0011676 FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486 1 9 10 160 2L 10831340 10831358 GTCACAGGATTATCGGTCG 59 10826070 10830602 TCGAGCAGGAAAGAATCTC 59 NA Drosophila melanogaster 50 Sur FBgn0028675 FBtr0079963 1 1 1 80 2L 10188950 10189031 AGTGTCTGTGTCATATCCC 58 10188888 10188907 GAACCATAGATACTGGAACG 57 NA Drosophila melanogaster 50 Pen FBgn0011823 FBtr0079937 1 1 1 69 2L 10058759 10058854 CAGATCAACAGACTGACGT 59 10058887 10058905 TTGTGCTGTAGAAGGAGTC 58 NA DesignRelaxed Drosophila melanogaster 50 bib FBgn0000180 FBtr0079929 1 1 1 95 2L 9987720 9992265 CTTTATGGCGTAACTGTGC 59 9992324 9992342 TTCCACACCGAATCTTTCC 59 NA Drosophila melanogaster 50 CG3838 FBgn0032130 FBtr0079835,FBtr0079834 1 2 2 107 2L 9571709 9571727 CCACAAGTGTCTCTACGAC 59 9571886 9571965 CAATGGATCACGCTTTCTC 58 NA Drosophila melanogaster 50 scat FBgn0011232 FBtr0079809 3 1 1 60 2L 9433073 9433091 TGTAGACAGCTTCAAAGTG 57 9433113 9433133 TAGTGTGAGGTTATAGTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9541 FBgn0032083 FBtr0079785 3 1 1 83 2L 8971317 8971335 CTTGGAACTCTTTCGTGAG 58 8971183 8971271 GTGTCTCCATCAACAATCTG 58 NA Drosophila melanogaster 50 CG13385 FBgn0032039 FBtr0079660 2 1 1 60 2L 8397271 8397290 TGTACTAACACCATTGACCA 58 8397312 8397331 CCAATGTTTCGTAAATCGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17292 FBgn0032029 FBtr0079649,FBtr0079648 2 2 2 119 2L 8372744 8372890 TATATTATGGACCCACGGTG 58 8372972 8372990 AGTAGCCGTGCAAATAGAG 59 NA Drosophila melanogaster 50 CG7806 FBgn0032018 FBtr0079600 1 1 1 175 2L 8315081 8315160 GAAGAAAGTCATGTTTGCCA 58 8315297 8315316 TCGCATATAGACTGACACAG 58 NA Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567 1 8 9 163 2L 8089727 8105702 CAATCACTTGATAAGCTGGTG 59 8106857 8106875 GAAGGTACATCCGTCACAG 59 NA Drosophila melanogaster 50 Proct FBgn0045038 FBtr0079562 2 1 1 186 2L 7870281 7870299 GATTTGGACAAGTTGCGTG 59 7865996 7866014 CATTAGAGTTGCCGTTGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG11201 FBgn0031853 FBtr0079302 2 1 1 60 2L 6734078 6734097 CCTTCATAGAGGACTACCAG 58 6734120 6734138 TGCTCCCTTACATAGAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nhe3 FBgn0028703 FBtr0112942,FBtr0079318 2 2 3 97 2L 6680539 6680961 TATCAAGTGCACAGTTCTG 57 6680460 6680478 AAGTTCGTATCTGTTCCAC 57 NA Drosophila melanogaster 50 CG9523 FBgn0031812 FBtr0079257 3 1 1 163 2L 6425660 6425737 ATCCTGTCAACTATGCAGC 59 6425862 6425882 ATGATAGTACTTGCTACGCTG 59 NA Drosophila melanogaster 50 CG34380 FBgn0085409 FBtr0112617 3 1 1 121 2L 6203309 6203420 GGATGTTCAGGTATTTGTGC 59 6203503 6203522 TAACATCCCTTGCATGATCC 59 NA Drosophila melanogaster 50 hoe1 FBgn0041150 FBtr0077395,FBtr0077398,FBtr0077397,FBtr0077399,FBtr0077400,FBtr0077396 3 6 6 107 2L 4909616 4909688 TCATTCTATGGGTTTCCGC 59 4909527 4909546 GATTCAAGGTGCTATTCTGC 58 NA Drosophila melanogaster 50 CG15635 FBgn0031617 FBtr0077375 2 1 1 60 2L 4644973 4644991 TCACCGAATCAAATTGGAC 58 4645013 4645033 GGTATATTCCCACATTAGGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tps1 FBgn0027560 FBtr0077431 3 1 1 92 2L 4391615 4391634 CTCTGGAGATGGATGATGTG 59 4391686 4391772 GGTTATAGCCGATGTATTTCAG 58 NA Drosophila melanogaster 50 l(2)k16918 FBgn0021800 FBtr0077497,FBtr0077498 2 2 2 94 2L 3807048 3807142 TGGAAACTAGTGTTGCTGG 59 3807200 3807218 CTGGTCGTACATGAGATGG 59 NA DesignRelaxed Drosophila melanogaster 50 CG3213 FBgn0031545 FBtr0077561 1 1 1 60 2L 3517955 3517973 GCTCTTAGAGAACGAGCAG 59 3517913 3517931 CTGCATCTCATCCTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tim FBgn0014396 FBtr0114526,FBtr0077564,FBtr0077567,FBtr0114527,FBtr0077566 3 5 8 81 2L 3500054 3500072 CCAGAATTCCGGACTACTG 59 3499754 3500009 TTGAGGTTGAGTTTGTCCA 58 NA Drosophila melanogaster 50 Chd1 FBgn0016132 FBtr0077674 3 1 1 184 2L 2980569 2980648 AATCCCGCGATAGATACAG 58 2980311 2980330 CAATCCATAGTAATTGGGCG 58 NA Drosophila melanogaster 50 CG31689 FBgn0031449 FBtr0077707,FBtr0077705,FBtr0077708,FBtr0077706 2 4 4 82 2L 2738712 2738730 GAGACCTTCAACAACTGGT 59 2738774 2738879 GAGAAGATGATATGGACTGGT 58 NA Drosophila melanogaster 50 Cyp309a1 FBgn0031432 FBtr0077749 3 1 1 131 2L 2563058 2563143 TATTTGCTTAGGTATGCGC 57 2562945 2562963 TTGAGGAAGATTCCCATCC 58 NA Drosophila melanogaster 50 CG17660 FBgn0031356 FBtr0077912 1 1 1 81 2L 1708393 1708471 GACTGAGGAGGAATATGGTC 58 1708331 1708349 ATGACGGAAGCGATAACAG 59 NA Drosophila melanogaster 50 CG3662 FBgn0031285 FBtr0100469,FBtr0078012 3 2 2 100 2L 823318 823336 CCATTATCGACACTACCAC 57 823397 823418 GCTCATCTTCTTTATGAGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GABA-B-R3 FBgn0031275 FBtr0078001 2 1 2 103 2L 756068 756676 CTATAGTGGACTGAACAATCAC 58 756740 756758 TGATCCTGGAACCATAACC 58 NA Drosophila melanogaster 50 CG3436 FBgn0031229 FBtr0078119 1 1 2 94 2L 156467 156485 AGAAGGACATGAGGGAGAG 59 156543 156744 GCCAGATGTAGATTTGCCT 59 NA Drosophila melanogaster 50 CG41293 FBgn0085602 FBtr0114046 3 1 1 190 XHet 60506 60525 CATTCTTGCTATAGCTTCCG 58 60678 60991 GTTGCAGTTGCTTCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15460 FBgn0031104 FBtr0113006 1 1 1 74 X 20261401 20261475 CAATTTGCTCATGCTGGAC 59 20261345 20261366 GAAACCGAAGTTAAATACCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12531 FBgn0031064 FBtr0074788 3 1 1 95 X 19619661 19619757 CAGAATAGATATGCGCTGG 57 19619816 19619834 GCTCAGCTTGAATATCAGG 57 NA Drosophila melanogaster 50 CG33639 FBgn0053639 FBtr0091616 2 1 1 60 X 18108514 18108532 CACCTGGAGCTTTATCTGG 59 18108051 18108071 GCACTAGTAACATCATTACGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7192 FBgn0030894 FBtr0074527,FBtr0074528 1 2 2 83 X 17992531 17992619 TGAATGATATACCTACACTGCC 59 17992469 17992487 ACAAGATCTGACGTTCCAG 59 NA Drosophila melanogaster 50 CG13002 FBgn0030804 FBtr0074343 3 1 1 78 X 16784351 16784369 AGGAGGAGATGATTTGTCC 58 16784540 16784558 TTTCTCACAAACACGTGGT 59 NA DesignNoJunction Drosophila melanogaster 50 r FBgn0003189 FBtr0089734 2 1 2 143 X 16554498 16554582 GTTTCAAGCACAAGATGGAG 59 16559233 16559251 TCTTGTCGAATGTCCACTG 59 NA Drosophila melanogaster 50 CG1998 FBgn0030485 FBtr0073787 3 1 1 89 X 13304292 13304383 CTGCTAAAGGTGATCTGGT 58 13304221 13304239 ACGGATCTCCATTAGTCGA 59 NA Drosophila melanogaster 50 CG32642 FBgn0052642 FBtr0073713 1 1 1 82 X 12853507 12853527 TATAGCTACCATCCATTCTCG 58 12853571 12853672 ATGAGTTCCTTCTTTCCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fne FBgn0086675 FBtr0073712,FBtr0113493 2 2 2 91 X 12836882 12837129 TAATTTGGTCTTGCCAGCA 59 12837243 12837264 CCCTGACGTAATTAACAAATCC 59 NA Drosophila melanogaster 50 CG15220 FBgn0030322 FBtr0073535 3 1 1 60 X 11509439 11509458 AACATCGACTTCGATAAGGA 58 11509398 11509419 CCTTGACATTGTTAATCAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15365 FBgn0030077 FBtr0071357 3 1 1 294 X 8950811 8951051 GAAATTTGGCAGTACCACTG 59 8950366 8950491 CTCCTTGTCTTTCTCATTGTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG18262 FBgn0030012 FBtr0071158 2 1 1 85 X 8047512 8047530 AATGAAACTCACGAGGAGG 59 8047579 8047597 CATTGGAAGAGCATGTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 APC7 FBgn0029879 FBtr0070947,FBtr0070946 3 2 2 62 X 6492972 6493060 TATTACAAGGCATTGCGTC 58 6493086 6493104 CAATAAACGTAGTCCTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 Ubi-p5E FBgn0086558 FBtr0070933 3 1 1 117 X 6172016 6172035 TACCATTGAGAACGTTAAGG 57 6171918 6171936 GTTGTAGTCGGACAAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ptp4E FBgn0004368 FBtr0070725,FBtr0070724 3 2 2 95 X 4843694 4843785 CGAATTAGCTACCATGAGCA 59 4843842 4843861 GTACTCCGTAAGATTCGTGG 59 NA Drosophila melanogaster 50 A3-3 FBgn0028550 FBtr0070244 1 1 1 138 X 1146119 1154000 CATTTATTGATTCGATGCCG 57 1146000 1146018 GTAAGATCGATCCATCGGT 58 NA Nonspecific, InUTR Drosophila melanogaster 50 mus81 FBgn0040347 FBtr0070170 1 1 1 63 X 835391 835409 ACGAGACTGTTCCATTCTG 59 835436 835454 AAGTTCCTCGTCGATTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41490 FBgn0085651 FBtr0114095 1 1 1 98 U 1766133 1766210 TATTGGTACATCGAAGCGT 58 1766272 1766290 ACCTTGACTCTCAATCGAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 RfaBp FBgn0016724 FBtr0089188 3 1 1 165 4 1093856 1093875 AAATCTCGTCAAGTTACGGA 59 1094003 1094078 TAAATAGGGTGCGTATGCC 59 NA Drosophila melanogaster 50 CG31998 FBgn0051998 FBtr0089145 1 1 1 86 4 224660 224678 AACGAAGCATACCAGACAC 59 222271 224612 GTGACGAGTGATATCTCTGTG 59 NA Drosophila melanogaster 50 bxd FBgn0020556 FBtr0083343,FBtr0083344 1 2 4 92 3R 12571211 12571230 CAATATGCTTCGGTAATCGT 58 12570417 12571156 TGGGAAGTGATAATGTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ferrochelatase FBgn0024891 FBtr0085849,FBtr0085851 2 2 3 95 3R 27636789 27636807 GTCAGACGAATCCCTACAG 59 27636653 27636731 TAACATAGCCCTTAATGGCA 58 NA Drosophila melanogaster 50 CG1971 FBgn0039881 FBtr0085847,FBtr0085848 1 2 2 60 3R 27631894 27631913 GCTTTCTAGAGAAGATTGGC 58 27631936 27631954 AAGAGCTGACTTCCTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1638 FBgn0039855 FBtr0113315 2 1 1 140 3R 27416451 27416525 AATTCCAGCTCTAATGGGC 59 27416682 27416700 CTTGAGTAGATCCTCCCTG 58 NA DesignNoJunction Drosophila melanogaster 50 CDase FBgn0039774 FBtr0085649,FBtr0085647,FBtr0085646,FBtr0085648,FBtr0085645 2 5 5 81 3R 26289005 26289023 TCTGCTCTATGACATCTCC 57 26289067 26289145 TTTGATGCACAGATACAGTC 57 NA Drosophila melanogaster 50 RpL32 FBgn0002626 FBtr0114556,FBtr0085592,FBtr0085593,FBtr0085594,FBtr0114555 1 5 5 81 3R 25871345 25871425 GATATGCTAAGCTGTCGCA 59 25871282 25871300 AGATACTGTCCCTTGAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7824 FBgn0039711 FBtr0089927,FBtr0089926 1 2 2 60 3R 25684555 25684574 AAAGGAAGGACTCTTTCTGC 59 25684514 25684533 ATCACATCCTCGAACTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cnx99A FBgn0015622 FBtr0110909,FBtr0085438,FBtr0110908,FBtr0085437 3 4 4 132 3R 25143656 25143676 CCCTATACCATCATGTTTGGA 59 25143220 25143562 CTTCCAAACGGTTCTTTGG 59 NA Drosophila melanogaster 50 Hrb98DE FBgn0001215 FBtr0085302,FBtr0085298,FBtr0085303,FBtr0085299,FBtr0085301,FBtr0085300 3 6 6 99 3R 24426823 24426844 CGACATCAACATAGTCATTGAC 59 24426904 24428498 TTGCAACACAACTTTGTCC 59 NA DesignNoJunction Drosophila melanogaster 50 tau FBgn0051057 FBtr0085197 3 1 1 120 3R 23469624 23469643 ATAATGTAAAGCACAAGCCC 58 23467203 23469541 GATGGTAGTGGACTCTGTG 59 NA Drosophila melanogaster 50 CG31063 FBgn0051063 FBtr0085127 2 1 1 272 3R 23054035 23054053 CTTGTACAACACTTCTCGC 58 23053655 23053799 ACTCCAGATCTGTAGACCA 58 NA DesignRelaxed Drosophila melanogaster 50 CG5116 FBgn0039339 FBtr0084877 2 1 1 84 3R 21310454 21310472 CTTTATGTCCGATCTGCCA 59 21310520 21310597 GTGGACTATTACATCCGCC 59 NA Drosophila melanogaster 50 CHKov2 FBgn0039328 FBtr0084849 1 1 1 85 3R 21155595 21155679 TCTCTGGGCTTTCATATGC 59 21155528 21155548 CCATTACGTTGCCTATATGTG 58 NA Drosophila melanogaster 50 CG31102 FBgn0051102 FBtr0084862 3 1 1 139 3R 21119990 21120084 GATCACGAACAGTATCCCA 58 21119869 21119889 CCAGTTTGAGTATAGCTTAGC 58 NA Drosophila melanogaster 50 CG13663 FBgn0039291 FBtr0084873 3 1 1 61 3R 21040757 21040775 GGAGATTCTGGATGTTGGG 59 21040652 21040735 TACCTGTTGTACCTCTATTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fd96Cb FBgn0004898 FBtr0084771 2 1 1 60 3R 20920983 20921001 ATTCTACCGGAAGAACACG 59 20921025 20921043 GTTGAAGCTGAGATTGTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31115 FBgn0051115 FBtr0084757 2 1 1 60 3R 20863483 20863501 CTGATAACGGCTATTCGGA 58 20863523 20863543 TTGCCTTTAGAATATCCTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13631 FBgn0040600 FBtr0084693 3 1 1 68 3R 20595636 20595654 ATGACACAAAGAATTCGCG 59 20595686 20595704 TGGAATCTTGGGAACTACG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 SMC1 FBgn0040283 FBtr0084541 3 1 1 92 3R 19886026 19886109 GTATTCAGATCTTGAAGGAGC 58 19886163 19886181 TACGAAGTCGTTCCTTCAG 59 NA Drosophila melanogaster 50 sec13 FBgn0024509 FBtr0084409 2 1 1 164 3R 19182661 19183125 GATTGGACTAAGCTCTACGA 58 19183252 19183270 TATCTTCTTGGCATCCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4656 FBgn0039055 FBtr0084407 1 1 1 131 3R 18942727 18942814 TCCAAACTTAAGGTCTACAACC 59 18942617 18942635 GAGATGAATCACTCCCTGC 59 NA Drosophila melanogaster 50 CG17244 FBgn0039031 FBtr0084340 3 1 1 131 3R 18803188 18803207 CAATATTCCCGAAATCCCGA 59 18803301 18803319 CTGGTCTGGTTATTGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6969 FBgn0039005 FBtr0084303 3 1 1 107 3R 18523289 18523367 TTCACCAAAGCTCAATTGG 58 18523438 18523456 CAGTCTCTGCATAACATGC 58 NA Drosophila melanogaster 50 CG18594 FBgn0038973 FBtr0084255 2 1 1 65 3R 18292248 18292266 ATCCAGAAGTACAGCTTCG 59 18292295 18292313 GTAGTCATCGTATTGGGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nop56 FBgn0038964 FBtr0084230 3 1 1 105 3R 18246118 18246136 GATTCCACTTCGCTAAGCT 59 18245966 18245984 ACATTGAACTTGACCTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG6560 FBgn0038916 FBtr0084151 3 1 1 68 3R 17712055 17712073 AGGATTGGATAATGCTGGC 59 17711942 17712023 GTTACCGTGGTTATGTCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG6569 FBgn0038909 FBtr0084156,FBtr0084155 3 2 3 60 3R 17692524 17692545 CATCTGAAGAATATGCTCAAGC 59 17692428 17692503 TCAGCTTCTCCTTTATGGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG5871 FBgn0038870 FBtr0084050 2 1 1 92 3R 17046821 17046906 ATGTGCATAGTATGCATGTG 58 17046960 17046979 TAGTCCTATCAGACTGAGCT 58 NA Drosophila melanogaster 50 Mvl FBgn0011672 FBtr0089521,FBtr0089522,FBtr0089523 3 3 3 82 3R 16882560 16883306 GGCTATGAGTACATTGTATCAG 58 16882499 16882517 GAATTGCAGTTAGAGCACC 58 NA Drosophila melanogaster 50 CG17274 FBgn0038835 FBtr0083989,FBtr0083990 3 2 2 166 3R 16678290 16678432 CTTTGTTACAACAGGGAGG 57 16678142 16678161 TTGATTCAAATAGTCCACGC 58 NA Drosophila melanogaster 50 CG17838 FBgn0038826 FBtr0083962,FBtr0113256,FBtr0113255,FBtr0083959,FBtr0083960,FBtr0083963,FBtr0083958,FBtr0083961 2 8 8 134 3R 16622986 16623073 CAGGAAGAATTAAGGTTTGGG 58 16623169 16623187 TATCCTCTGAGACGTCCTG 59 NA Drosophila melanogaster 50 CG15685 FBgn0038789 FBtr0113253 3 1 1 92 3R 16169211 16169229 AGAGGCTGGATCTTAATGC 59 16169283 16169432 GTCAATGAACTCTAGTTCCCA 59 NA Drosophila melanogaster 50 CG17190 FBgn0038761 FBtr0083845 3 1 1 67 3R 15837892 15837910 CTGATAAACACAGTTGGCG 59 15837843 15837861 ATCAGCCGATGAGTATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4538 FBgn0038745 FBtr0083855,FBtr0083856 3 2 2 92 3R 15725521 15725606 GCTCTATAATGGAACAACTGC 59 15725449 15725467 CTTTAACATAGTCGGCGGT 59 NA Drosophila melanogaster 50 vib FBgn0026158 FBtr0083745 3 1 1 91 3R 15045341 15051748 GATCAAAGAATTCCGTGTGAC 59 15045190 15045208 TATTCTCCTTTGACGCCTC 59 NA Drosophila melanogaster 50 CG6026 FBgn0038676 FBtr0083715 2 1 1 264 3R 14867812 14867894 AACCATTGAAATTCCCTGC 58 14868122 14868140 TTTAAGGCAGGTGGATGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18598 FBgn0038589 FBtr0083569 1 1 1 118 3R 14076900 14076918 GTTTGGACAACTACAAGGC 58 14077000 14077083 CTTGTCCTTTAGCAGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7357 FBgn0038551 FBtr0083524 2 1 1 85 3R 13633814 13633832 CAAACGATTCAACAGCGAG 59 13633690 13633765 ATGTGAGGCAGATATGGAC 58 NA Drosophila melanogaster 50 CG5285 FBgn0038490 FBtr0083409 2 1 1 120 3R 12976689 12976768 AATTCCCTTTGGCAATGTG 58 12976852 12976870 CTCCTCAATCCGACAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5255 FBgn0038485 FBtr0083406 3 1 1 66 3R 12964332 12964409 GGATATCCAGATGCTCACG 59 12964439 12964457 ATAGACTTAGGTGAGTGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3678 FBgn0038461 FBtr0083376 1 1 1 80 3R 12816556 12816636 TACGATACACAATGGGTGG 59 12816494 12816513 TATGCGGATTAAGCTTCAGG 59 NA Nonspecific Drosophila melanogaster 50 nonA-l FBgn0015520 FBtr0083335 3 1 1 60 3R 12466565 12466583 GAATCAGAATGCCAACCAG 58 12466606 12466625 TTTATTGTCTCCTTGGTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12783 FBgn0038448 FBtr0089666 1 1 1 125 3R 12437937 12437955 AAACCGTTGCAATATGAGG 58 12437760 12437848 AAGGAGTCACTACAGACCA 59 NA DesignNoJunction Drosophila melanogaster 50 Gyc-89Db FBgn0038436 FBtr0083294 2 1 1 61 3R 12305285 12305303 AGAAGATTGTCGAGACGTG 59 12305328 12305346 GCCAATAAAGGTCTTTGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10407 FBgn0038395 FBtr0083237 3 1 1 89 3R 11871083 11871101 TATGGAATCGGACTACAGC 58 11870873 11870952 GTGATGTTAACGAGATCCAC 58 NA Drosophila melanogaster 50 CG31183 FBgn0051183 FBtr0083187 3 1 1 100 3R 11688528 11688713 CGATAATTCACTTCCTGGGT 59 11688447 11688465 CGATGTAGTGACGATAGCC 59 NA Drosophila melanogaster 50 CG8461 FBgn0038235 FBtr0082986 1 1 1 137 3R 10338543 10338616 ATCTGACAAAGAAGGAGCG 59 10338424 10338442 CTATACCAATGCGTTTGCG 59 NA Drosophila melanogaster 50 cv-c FBgn0086901 FBtr0112632,FBtr0112630,FBtr0112631 1 3 3 80 3R 10221737 10225449 TGTACGAAGATCATCAGTTCC 59 10221677 10221695 ACTGCAACTGATCGTTCTC 59 NA Drosophila melanogaster 50 CG14376 FBgn0038153 FBtr0082784 2 1 1 111 3R 9248179 9248198 ACGTAGTTCCTATCAGATCC 58 9248271 9248343 CTTGAAGATCTCACCATCCT 58 NA Drosophila melanogaster 50 CG9813 FBgn0038143 FBtr0082765,FBtr0082769,FBtr0082766,FBtr0082770,FBtr0082768,FBtr0082767 3 6 6 149 3R 9200197 9200215 CACCTTCTGGAACAAACTC 58 9199920 9200008 GCAAACATTACCTTTGCCA 59 NA Drosophila melanogaster 50 Osi22 FBgn0038133 FBtr0082738 3 1 1 60 3R 9117096 9117176 ATAATAGTGAAGAAGGTCGC 57 9117198 9117217 AAGAGTGGTAAGACTTTGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Arp87C FBgn0011745 FBtr0082652 2 1 1 87 3R 8519470 8519556 ATCTCAAGATCAGGATCGC 58 8519607 8519625 TTGAAAGTATCGAGCGAGG 59 NA Drosophila melanogaster 50 CG3313 FBgn0037980 FBtr0082555 2 1 1 82 3R 7841241 7841259 GAGCCGGAAAGTATTTGGA 59 7841113 7841195 CTCCGGATACACAATTCCT 58 NA Drosophila melanogaster 50 CG34302 FBgn0085331 FBtr0112498 3 1 1 60 3R 5648961 5648982 GAAGTCAATGAGGACTATTGGA 59 5648922 5648940 GAAACATCAGCATGTCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12947 FBgn0037753 FBtr0113213,FBtr0113212 3 2 2 62 3R 5607613 5607631 AGTACAACTAGTCGAAGCG 59 5607657 5607675 AAAGGGTCCATCTGTAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mcm2 FBgn0014861 FBtr0081827 3 1 1 114 3R 4092952 4093027 CAAGCTAACGAACATCGAC 58 4093104 4093123 GATGACACTCTCAATGTGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rm62 FBgn0003261 FBtr0078650,FBtr0078654,FBtr0078652,FBtr0078649,FBtr0078651,FBtr0078653 3 6 6 156 3R 1829624 1829748 AGGAGGAGAAATTGAAGACC 59 1829487 1829505 TTGTCACCGTGAATAGCTC 59 NA Drosophila melanogaster 50 CG11373 FBgn0040679 FBtr0078657 3 1 1 129 3R 1786221 1786523 GCACACGATAGGATTTGGA 59 1786059 1786078 TTTAGACGTCAAAGAATCCG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078673,FBtr0078676 2 2 5 85 3R 1587422 1587894 GTTCATTAGCTGGAAGAGC 58 1586952 1587374 TACATACCCAGTTATGTCCG 58 NA Drosophila melanogaster 50 CG9769 FBgn0037270 FBtr0078892 2 1 1 60 3R 539106 539124 GCTAGACCTTATCCACTCC 58 539064 539084 GTTGAACATCTGAGTGAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MED31 FBgn0037262 FBtr0078856,FBtr0078857 1 2 2 80 3R 468366 468479 CCAACTATCTAAACTTCCTTGC 59 468519 468538 AGTACTGCAGATACTTCAGG 58 NA Drosophila melanogaster 50 CG40402 FBgn0058402 FBtr0111156 1 1 1 72 3L 24284012 24284030 CTCAGCACTACCTTGTACC 59 24283958 24283976 CCAGTCGACTGTCTAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17698 FBgn0040056 FBtr0111168,FBtr0111167,FBtr0111166 2 3 3 84 3L 23741153 23741252 CTGGACAGAACGAATATTGTG 59 23741295 23741316 GGCACATTTCCGAATATTAAGG 59 NA Drosophila melanogaster 50 slif FBgn0037203 FBtr0078555,FBtr0078556,FBtr0078557 2 3 3 83 3L 22885584 22885671 GAATCTTTGCGTCCATAATGG 59 22885716 22885734 TGTATGCTAACAGGGTTCC 58 NA Drosophila melanogaster 50 SPoCk FBgn0052451 FBtr0078533,FBtr0078531,FBtr0113437,FBtr0078532 3 4 4 90 3L 22771851 22771869 TGAAATGTTGATGCAGAGC 58 22771923 22776536 GATACCGATGAGATTCGCA 59 NA DesignNoJunction Drosophila melanogaster 50 msopa FBgn0004414 FBtr0078482 1 1 1 214 3L 22075936 22075954 AACTTCATACAGATCGCCG 59 22076132 22076150 TTCTTTCTACCGGAACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hr78 FBgn0015239 FBtr0078392,FBtr0078390,FBtr0078389,FBtr0078391 2 4 4 80 3L 21488570 21488706 GACATTGATGTTCGCTACC 58 21488508 21488527 GGAATATCTGGCGAATAGCT 59 NA Drosophila melanogaster 50 Syx7 FBgn0086377 FBtr0078352,FBtr0078351 3 2 2 142 3L 21439416 21439434 TAGATTTCCAAAGGCTGGC 59 21439607 21439975 CATTATTTGGTGGAGCTGC 59 NA Drosophila melanogaster 50 CG14185 FBgn0036936 FBtr0074818 1 1 1 294 3L 20099876 20099894 GATGGAAACATGATCCAGC 58 20100152 20100170 ACTCCAGATCACTTGATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14103 FBgn0036908 FBtr0074927 3 1 1 224 3L 19797323 19797396 CTAAATGAAATTGCGCCGA 59 19797117 19797136 CACCTGATCAGTAACTCGAG 59 NA DesignRelaxed Drosophila melanogaster 50 st FBgn0003515 FBtr0075391 1 1 1 80 3L 16493263 16493341 GAATATAACCTGCTTTCAGGAG 58 16493382 16493400 TTGAAGCTGTACTTGTCCA 58 NA Drosophila melanogaster 50 CG33158 FBgn0053158 FBtr0075390 1 1 1 223 3L 16415718 16415736 CAATATTGTGGTCAACGCC 59 16478713 16484619 TATCAATCACCTCCCAGTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG5931 FBgn0036548 FBtr0075527 3 1 1 80 3L 15959954 15960029 TGCATGCAGAGAATCTAGC 59 15959892 15959911 CATCTATGTCCAGAGGATGC 59 NA Drosophila melanogaster 50 CG13461 FBgn0036468 FBtr0075664 1 1 1 60 3L 15045317 15045336 AGATAATGAATCAAGCGGAG 57 15045276 15045296 TTCGGTATTATCATCAGACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100042,FBtr0100039,FBtr0100040 2 3 6 108 3L 14206204 14206223 ATCGAGCTTTAACTCATCGG 59 14206293 14223284 CAGTTCCAGCCTATAATCGT 59 NA Drosophila melanogaster 50 Gl FBgn0001108 FBtr0075756 2 1 1 60 3L 13922768 13922789 CTAGCTAAGACGTGATTATTGG 58 13922810 13922892 GTACTTATGATTGTGCGCT 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG13737 FBgn0036382 FBtr0075754,FBtr0075755 2 2 2 63 3L 13875756 13875774 TGGAGACCTATTTGACGGA 59 13875801 13875819 CTGTTGGGCTCAAATTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33262 FBgn0053262 FBtr0075826 3 1 1 62 3L 13129446 13129464 ACACTCCAGATCTAAACGT 57 13129489 13129565 ATAAACTGGTGCCTTGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11262 FBgn0036329 FBtr0075872 1 1 1 60 3L 12989102 12989121 CCTCGGTATGATGATACTGG 59 12989143 12989162 AGCCATCCAATCAAATACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10681 FBgn0036291 FBtr0075957 3 1 1 122 3L 12494979 12494997 CATTCAAAGTCTCGCAGGA 59 12495138 12495157 GATAAGGCATTGCAGTTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32104 FBgn0052104 FBtr0075986 3 1 1 80 3L 12391001 12391088 CTATTTCGATTAGCCAGATCCA 59 12390942 12390962 ATAGATGCTAAAGATCCCAGC 59 NA Drosophila melanogaster 50 rols FBgn0041096 FBtr0076054,FBtr0076055,FBtr0076057,FBtr0076053,FBtr0076056 3 5 5 80 3L 12001905 12001986 AACTGAATGAACTTGACGC 58 12001843 12001861 CGTAGTATCCTTCGTAGCT 57 NA Drosophila melanogaster 50 Sug FBgn0036191 FBtr0076109 3 1 2 94 3L 11680623 11680642 CATGGGATTTGATGTGTTCG 59 11680762 11680780 AGAGAAACATCTGACCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 vsg FBgn0045823 FBtr0076401 2 1 4 182 3L 9707708 9708846 AATTTGTGCGAAGAAGCAG 59 9708992 9709010 GGTCTTCTCAGTCGATGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3088 FBgn0036015 FBtr0076421 2 1 1 60 3L 9593689 9593707 ATTTGCTAGGATCACCAGC 59 9593647 9593665 TTAGTAGGCGATTCCAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rhea FBgn0020254 FBtr0076627 1 1 1 80 3L 8555114 8555135 GTAAGATTATGGAGAAGGATCG 57 8555176 8555253 CCCAGTTCATTTCATCGTC 58 NA Drosophila melanogaster 50 ergic53 FBgn0035909 FBtr0076626,FBtr0076625 2 2 2 123 3L 8529703 8529721 ATGAATCAGGTCAAGCAGG 59 8530054 8530073 TTACGCTTAGGAACAATGTG 58 NA DesignNoJunction Drosophila melanogaster 50 mtrm FBgn0010431 FBtr0076613 1 1 1 60 3L 8406520 8406539 GAGCGAGAAATAAAGAGCTG 58 8406561 8406580 TCTCCATATTCGAGTCATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mkg-p FBgn0035889 FBtr0076664 1 1 2 93 3L 8397147 8397217 GTTTAGCACTGAAGGAGAG 57 8397072 8397091 GAGGTCTTGTTGTATAGCTG 57 NA Nonspecific Drosophila melanogaster 50 CG17352 FBgn0035880 FBtr0076675,FBtr0076676,FBtr0100664,FBtr0113154,FBtr0076674 3 5 5 200 3L 8349038 8349119 ACTACTGCCTATAGAAGCTC 58 8348857 8348875 CGAGAACTGGATATGCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34461 FBgn0085490 FBtr0112767 2 1 1 152 3L 8319405 8319423 ACTACGGCATTAAGGATCC 58 8319996 8320014 CATTGAAGCCATTGTGGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7197 FBgn0035866 FBtr0076715 3 1 1 61 3L 8292008 8292026 TCTATGCCAATAAGCAGGA 58 8291965 8291983 CAGTTGTCGTGAGATTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13675 FBgn0035845 FBtr0113152 2 1 1 80 3L 8154325 8154343 GGATCAGAGCAACTCTACC 59 8154176 8154281 TTGCTGTTGATCATTCAGC 58 NA Drosophila melanogaster 50 Ect4 FBgn0085402 FBtr0112598,FBtr0112601,FBtr0112602,FBtr0112600 2 4 5 86 3L 8092629 8096003 TCATTAAGGAAGCCCTCTC 58 8096053 8096071 TTTGCACCGTAATACTGGA 58 NA Drosophila melanogaster 50 CG32377 FBgn0052377 FBtr0076820 3 1 1 60 3L 7661985 7662005 GGTTTGTCTAGCATATGTCTC 58 7661945 7661964 AGGTTGTAATTTCCTCTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32389 FBgn0052389 FBtr0076921 3 1 1 60 3L 7156002 7156023 CGGAAATCTGAAATCCATATCG 59 7155963 7155981 TATGTGGCACTGTATGGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10478 FBgn0035657 FBtr0077069 3 1 1 144 3L 6003671 6003756 ATTTAATTGCGAAGGCTGG 58 6003545 6003566 CCGTGTCTTATGATATAGTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rpd3 FBgn0015805 FBtr0073317 2 1 1 124 3L 4627519 4627616 AAATGGAAATATACCGTCCC 57 4627703 4627721 CATCTGCTTGTTGTACTCC 58 NA Nonspecific Drosophila melanogaster 50 CG15005 FBgn0035508 FBtr0073255 1 1 1 60 3L 4202887 4202908 GACTTTAAGATACCCACTTCCA 59 4202848 4202868 GATTGTAGAAGTCCAGATCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 scrt FBgn0004880 FBtr0073165 2 1 1 86 3L 3985478 3986530 AATGTTTACAACGGCTACAC 58 3986579 3986597 GATCACGGTTATCTCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1079 FBgn0026592 FBtr0073157 1 1 1 80 3L 3894049 3894067 CTACGCACCATGAATAAGC 58 3894111 3894183 GAAACGATAGGGTATGGCT 58 NA Drosophila melanogaster 50 Drs-l FBgn0052274 FBtr0073081 3 1 1 84 3L 3335758 3335776 TTCCTAATTGTCCTGTCCG 58 3335692 3335710 TATATCTTCCGGAAAGGCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34022 FBgn0054022 FBtr0100077 2 1 1 60 3L 1206131 1206149 AACTCCAGGTTCAATACCC 58 1206173 1206191 TCTGCAGACAGTATTCCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13887 FBgn0035165 FBtr0072583,FBtr0072584 1 2 2 61 3L 838571 838589 AACAAGAACACCGAGAAGG 59 838614 839257 TTGTTGAGCTCGATGAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33229 FBgn0053229 FBtr0072499 1 1 1 194 3L 224470 224488 ATTCAAACACGGTTTGTGC 59 224646 224664 GTTGTTGCATGTGTCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yki FBgn0034970 FBtr0072183,FBtr0072184 1 2 3 121 2R 19954726 19954744 CAGAATCCAATATCGCCAG 58 19953691 19953792 TATCCTCAATCTGGAGGGA 58 NA Drosophila melanogaster 50 CG4324 FBgn0034956 FBtr0114534,FBtr0072197 2 2 2 116 2R 19903818 19903839 GTACTACTAGTGCTGTATAGCA 58 19903663 19903741 CAAGGTAACTGACTGTGGA 58 NA Drosophila melanogaster 50 Gr59d FBgn0041236 FBtr0071976 3 1 1 60 2R 18992336 18992355 GACTGTATCAGAGAAATCCG 57 18992295 18992313 AATTTGCTAACGATGCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33143 FBgn0053143 FBtr0071858 3 1 2 60 2R 18509762 18509780 CCCATCGAGAAGTACATCG 59 18509803 18515321 CCTGTACAACCCTGTAACTG 59 NA DesignRelaxed Drosophila melanogaster 50 wdp FBgn0034718 FBtr0071849,FBtr0071852,FBtr0071851 1 3 4 133 2R 18188505 18195724 GTCTTATAGAAGATAAGACGCC 57 18188393 18188411 CAACCACAATGAGGAACAG 58 NA InUTR Drosophila melanogaster 50 PpN58A FBgn0025573 FBtr0071734 1 1 1 60 2R 17769641 17769659 GTGTATCTGCTACTGGGTG 59 17769599 17769617 GGGTCAATGTTTCGATGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sara FBgn0026369 FBtr0071641,FBtr0071642 1 2 2 80 2R 17372489 17372573 GGTCAAGATTGTTAACATGAGC 59 17372613 17372632 CTGCCCATATGATGTAGTCC 59 NA Drosophila melanogaster 50 CG9752 FBgn0034614 FBtr0071616 2 1 1 61 2R 17182200 17182218 AGTTTGGAGTACACCAGTG 59 17182157 17182177 CCGTTCTCCAGAATAGTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)05510 FBgn0028622 FBtr0086258 1 1 1 73 2R 16451345 16451363 CAAGGTCTACGAGATCTCG 58 16451217 16451308 GGACCTCATTCTTGTTGAC 58 NA DesignRelaxed Drosophila melanogaster 50 RpL11 FBgn0013325 FBtr0086533 2 1 1 60 2R 15330559 15330577 TCGGTATCTATGGTCTGGA 58 15330601 15330833 TGGTTCACATTGTAGCCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG15109 FBgn0034416 FBtr0086576,FBtr0086574,FBtr0100137 1 3 4 60 2R 14947719 14947738 CCCAATCTTAATCCCAATCC 57 14947761 14947779 CCAGCTTGTTGTAGTACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 grh FBgn0004586 FBtr0090009,FBtr0090012,FBtr0090011,FBtr0090008,FBtr0090007,FBtr0090010 2 6 6 163 2R 13726937 13727109 ATGCAGACCGATAAGAAGG 59 13727236 13727254 AACGGTGTATACACCTCCT 59 NA Drosophila melanogaster 50 CG34194 FBgn0085223 FBtr0112387 3 1 1 88 2R 13432116 13432335 GTCTTCCTCAATGTCCTCC 59 13432387 13432405 AAGACGGTGACACAATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4802 FBgn0034215 FBtr0086916 1 1 1 86 2R 13316436 13316513 ACTAAATGCCAAGCAATGC 59 13316562 13316581 TCTTCTGTTATTTCGTGGCA 59 NA Nonspecific, InUTR Drosophila melanogaster 50 Amy-d FBgn0000078 FBtr0086983 1 1 1 116 2R 13013722 13013740 CTTCCATCTACATTGGCAG 57 13013820 13013838 ATCTCAAGTAATTGCTCGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG30091 FBgn0050091 FBtr0087277 3 1 1 85 2R 11569234 11569323 CGAAAGTACGGCATTAAAGG 59 11569371 11569389 CGAATTTGGGATGCTTGTG 59 NA Drosophila melanogaster 50 CG11807 FBgn0033996 FBtr0087363 1 1 1 93 2R 11089550 11089568 TACAAGATCTTGCCAAGCT 58 11089625 11090537 ATAGCGTAGACCTCTAGGG 59 NA Drosophila melanogaster 50 CG12866 FBgn0033955 FBtr0087434 2 1 1 81 2R 10558082 10558161 GATCGGATAAGAACACCCA 58 10558204 10558224 ACTCTAGAAATCCTATCGGGT 59 NA Drosophila melanogaster 50 CG17048 FBgn0033828 FBtr0087721 3 1 1 117 2R 9241633 9241651 GTTTAGCACTGTACAGGGA 58 9241384 9241552 AATAGACGCCAGTTATCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30048 FBgn0050048 FBtr0100374 1 1 2 102 2R 8283471 8283542 GAACATATCGTCGGTTTCG 58 8283608 8283626 ATTGGGATTGCCATCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8501 FBgn0033724 FBtr0087915 2 1 1 60 2R 8271745 8271764 GGAAGGATGAATTGCAACTG 59 8271787 8271805 TTGGTGTCGAATGACTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13163 FBgn0033712 FBtr0087896 3 1 1 101 2R 8209153 8209232 CAAACTAGTCACAGCTGCT 59 8209297 8209315 ATGGTAAGGGATTTCTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SmD3 FBgn0023167 FBtr0087986 1 1 1 60 2R 8056581 8056601 AGATCCGATTCCTTATACTGC 59 8056623 8056641 GTCTGCTTCTTGAACATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr47Ee FBgn0033602 FBtr0088114 2 1 1 106 2R 7153178 7153196 TTCTCCTACGGATACTCGT 59 7153266 7153629 GATCCCTGAATCACCTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or47a FBgn0026386 FBtr0088111 3 1 1 60 2R 7139096 7139185 CTTCTCATCGATTGTTCGC 58 7139208 7139227 TTAGGAGAATGATCTCAGCA 57 NA DesignRelaxed Drosophila melanogaster 50 Obp47a FBgn0033573 FBtr0088200 3 1 2 61 2R 6797429 6797447 TGAATCGAGTTCTAGTGCT 57 6797470 6797570 GATGTTTATCTCGCTCAAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab3 FBgn0005586 FBtr0088257 2 1 1 89 2R 6611871 6612327 TGAAACTCCAGATCTGGGA 59 6611800 6611818 TTAGGATGAAACCCATCGC 59 NA DesignNoJunction Drosophila melanogaster 50 Or46a FBgn0026388 FBtr0088331 2 1 2 93 2R 6029334 6029352 TGTCCTTCTCATGATGCAG 59 6029409 6029488 GATAGAACCAAAGGCCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mef2 FBgn0011656 FBtr0088444,FBtr0088443,FBtr0088447,FBtr0088445,FBtr0088446 1 5 6 88 2R 5806136 5806224 ATGCAGATCAACGACAGAG 59 5806066 5806084 AAAGGAATAGCTCGTGAGG 59 NA Drosophila melanogaster 50 CG8229 FBgn0033356 FBtr0088673 1 1 2 284 2R 4837415 4837433 AAGTGTGAGGATGTCTCCT 59 4836245 4836265 CTATAGCTCCATTCTAGAGCT 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG30359 FBgn0050359 FBtr0088749 3 1 1 89 2R 4351066 4351141 GGAGACCATGAGTAACGTC 59 4351194 4351212 GCTATTTCGAACACATGGG 58 NA Drosophila melanogaster 50 CG30374 FBgn0050374 FBtr0088810 2 1 1 60 2R 4045255 4045275 ATACCTGGAGTCTACATTTGC 59 4045215 4045234 TTGAAGAGGTAAGCAGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7861 FBgn0033055 FBtr0085974,FBtr0085973 1 2 2 60 2R 1931052 1931070 TAACCAACCTGAACCTGAG 58 1931143 1931161 TCAGTGATTTGGGATGACG 59 NA DesignNoJunction Drosophila melanogaster 50 tRNA:CR31943 FBgn0051943 FBtr0077818 1 1 1 60 2L 2009162 2009181 TGGTGTAATGGTTAGCACTC 59 2009204 2009222 TCCACCGAGATTTGAACTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 lt FBgn0002566 FBtr0111123,FBtr0111125,FBtr0111124 2 3 3 80 2L 22832738 22832817 CATAGTTGACTACTTTAGCCC 57 22832858 22832877 AGTGATTGTCGAAGATTTGG 58 NA Drosophila melanogaster 50 His4:CG33869 FBgn0053869 FBtr0091873 1 1 1 60 2L 21534187 21534205 GAACGTAATTCGTGATGCC 59 21534145 21534163 GGCTGTAACTGTCTTCCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 His3:CG33824 FBgn0053824 FBtr0091828 1 1 1 60 2L 21469920 21469938 TCGAAGATACCAACTTGTG 57 21469962 21469980 ATGTCTTTGGGCATTATGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10947 FBgn0032857 FBtr0081368,FBtr0081369,FBtr0081370 2 3 3 60 2L 20387005 20387024 GAGAACTGGTACAAATACCG 57 20386964 20386982 GGATGTTCACCGAGTACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 La FBgn0011638 FBtr0081373 3 1 2 108 2L 20349027 20349045 TACATTGAGTTCGCCAAGG 59 20348866 20348955 CTTTGAACTTGAGCTTGCC 59 NA Nonspecific Drosophila melanogaster 50 CG17571 FBgn0032947 FBtr0081376 1 1 1 84 2L 20256406 20256424 GAAGGTGGAGGTTGATCTG 59 20256340 20256358 CATGGTCTCCAGAATCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10680 FBgn0032836 FBtr0081303 3 1 1 164 2L 19964560 19964581 TAACGATGTCGAGTTTCTAGAG 59 19964768 19964850 TAGTTGGGTTGACGAATGG 59 NA Drosophila melanogaster 50 CG13086 FBgn0032770 FBtr0081197 1 1 1 60 2L 19364459 19364477 CCTATGGTTCCTGATCGAG 58 19364501 19364519 CTCATAGGGATTCCTGCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15143 FBgn0032647 FBtr0080993 1 1 1 83 2L 17523938 17524017 ACGCTTTACAGAGAATCCT 58 17523873 17523891 CAGTTCCAAGGTTTCAACG 59 NA Drosophila melanogaster 50 CG5110 FBgn0032642 FBtr0080983 1 1 1 60 2L 17481631 17481651 ATGTACTCCAATTACCAGGTG 59 17481673 17481691 CCACAAAGGTCAGGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33928 FBgn0053928 FBtr0091932 2 1 1 85 2L 17436046 17436124 CCATTCTTGTCCCTATACAC 57 17435980 17436001 GCGGTACGTATTTAGTAAACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15134 FBgn0032621 FBtr0080949,FBtr0114502 2 2 2 83 2L 16904394 16904471 TAAGACAGGGAATCATTGTG 57 16904517 16904535 TGTTCTTGTACTGATGCTC 57 NA Drosophila melanogaster 50 CG4587 FBgn0028863 FBtr0112944,FBtr0112943 1 2 2 80 2L 15650698 15650779 TTCGCGTAACAATGTTACC 58 15650636 15650657 CTATTGTACTCACAATACACCC 58 NA Drosophila melanogaster 50 kuz FBgn0015954 FBtr0112886,FBtr0112887,FBtr0080509,FBtr0080510,FBtr0100660 1 5 5 86 2L 13634172 13634250 ACCTACAGAGATTTCACTGG 58 13634298 13634317 GTACTTCTCGCAAATTCCAC 59 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020 3 17 17 87 2L 12723993 12724013 AAGACCTATCAGATCAGACAG 58 12724062 12724215 ATTTGAGCACCTTAATGCC 58 NA Drosophila melanogaster 50 CG31763 FBgn0051763 FBtr0080356 2 1 1 184 2L 12373889 12373908 TACAACAAACTAAGCTCGGG 59 12374055 12374073 CAATACGTTGCCGTTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4988 FBgn0032372 FBtr0080254 2 1 1 97 2L 11695110 11695128 CTATATGGGTGGTACCCTG 58 11695189 11695293 CCTCAACGTTCCTAGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trim9 FBgn0051721 FBtr0080096 3 1 1 85 2L 10620160 10620308 GATCAGGATACTCAAGGACC 58 10620356 10620374 GAGCTTCAATGCAGAACTG 59 NA Drosophila melanogaster 50 RnrL FBgn0011703 FBtr0080059 2 1 1 109 2L 10327443 10327695 GTTGATCCTGTTACTATCACC 57 10327354 10327372 TTGCATGTTAATCCAGCTG 58 NA Drosophila melanogaster 50 CG5727 FBgn0032193 FBtr0079958 3 1 1 94 2L 10210151 10210226 AGTACACTCAGAGGAAGAC 57 10210075 10210093 CCATCCTAAAGAACTCCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33301 FBgn0053301 FBtr0079935 1 1 1 60 2L 10049949 10049967 AAACTAACTGCAGATGCCA 59 10049990 10050009 AATCCTCCAGAATCATGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33298 FBgn0032120 FBtr0089853,FBtr0089854 3 2 2 80 2L 9518546 9518631 CTATAAGAATGCTGCCTTTGTC 59 9518672 9518690 TGATCCATCATCACTTGGC 59 NA Drosophila melanogaster 50 CG9515 FBgn0032077 FBtr0079791 3 1 1 80 2L 8942553 8942572 ACGTATACTTTGGCGATCTG 59 8942436 8942511 AAGCACCAGCTTTATCTAGG 59 NA Nonspecific Drosophila melanogaster 50 Pvr FBgn0032006 FBtr0079629,FBtr0079628,FBtr0079625,FBtr0079627,FBtr0079630,FBtr0079626 2 6 6 82 2L 8226138 8226224 GGATTAAGGTGCTAAAGCA 57 8226074 8226092 ATTGGCATATTCCTGAACG 57 NA Drosophila melanogaster 50 CG18585 FBgn0031929 FBtr0079516 3 1 1 83 2L 7690549 7690693 AATGTCCAAGAGCGTATCG 59 7690484 7690502 CAGCTCGTAGTACTTCGTC 59 NA Drosophila melanogaster 50 CG5261 FBgn0031912 FBtr0079445,FBtr0079444 2 2 2 104 2L 7428203 7428285 TAAGCTCAACGAAGGTGAC 59 7428352 7428371 CCCTGGATGAGAATCTTAGC 59 NA Drosophila melanogaster 50 neuroligin FBgn0031866 FBtr0079344 3 1 1 80 2L 6904449 6904528 GTGGAATTGGGAAACAAGG 58 6904570 6904590 CTGAGGAATAAGGTTCAACCA 59 NA Drosophila melanogaster 50 Ent2 FBgn0026585 FBtr0079290 2 1 1 60 2L 6562867 6562888 CGTGTTCTTTATATTCCTGCTG 59 6562909 6562927 GATGAACATGTTCCATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13999 FBgn0031753 FBtr0079150 1 1 1 116 2L 5955793 5955811 CTGATTGCCCTATCAGTGG 59 5955638 5955656 GATCCAGTCAAGATGCTCC 59 NA DesignNoJunction Drosophila melanogaster 50 Cap-D3 FBgn0051989 FBtr0079097 2 1 1 88 2L 5533734 5533813 CATAGTAACACCCAGACTGG 59 5533864 5533882 ACAGGAATAGCAGCAATCC 59 NA Drosophila melanogaster 50 CG15626 FBgn0031635 FBtr0077412 3 1 2 157 2L 4837525 4837611 GGCGATAAAGAACATCACC 58 4837386 4837404 GTTCGTAACGATCCTTGTC 58 NA Drosophila melanogaster 50 CG10039 FBgn0031581 FBtr0077507 1 1 1 60 2L 4007892 4008752 ACTACATTTGTACCATGCGA 59 4008775 4008793 ATGGATTCGCGTAGTAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31777 FBgn0051777 FBtr0077542 1 1 1 64 2L 3706784 3706934 CCTTCAATACCCAGTATTTGC 59 3706740 3706758 ATATCAATGGCACAAACGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31698 FBgn0051698 FBtr0077612 1 1 1 79 2L 3173531 3173550 CTACTTCGTATGCAAGTCAG 58 3173404 3173489 AAAGAAGACGGGCATATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12400 FBgn0031505 FBtr0077617 1 1 1 142 2L 3145369 3145387 GAAGAGGAACGAGTACCTG 59 3145190 3145208 TTAGATCCACTTAGCGCAC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15403 FBgn0031504 FBtr0077661 1 1 1 60 2L 3129071 3129089 GCATTCAAGGAGTATGGAG 57 3129112 3129131 GAGAAATGACGGAAATGACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31950 FBgn0051950 FBtr0077630 3 1 1 135 2L 2878780 2878798 TGGTGGGATTCTTCAACTG 59 2878897 2878915 CTTAGGGAGACTATGTGCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3117 FBgn0031471 FBtr0077688 2 1 1 80 2L 2847053 2847071 TTCGACTTTAGTTCCACCA 58 2846921 2847011 ACTCTTACTCATGCCTATCAC 59 NA Drosophila melanogaster 50 CG10908 FBgn0031376 FBtr0077813 3 1 1 198 2L 1974696 1974714 GGCCATCACGTATATCTGG 59 1974938 1974956 CAAATCCTGCGAGTATTGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG5397 FBgn0031327 FBtr0077920 2 1 1 186 2L 1240785 1240804 ATGTATCTATCGATGTCGCC 59 1240952 1241051 TACTCCTTAAGCAATTGACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5126 FBgn0031320 FBtr0077978 2 1 1 102 2L 1183604 1183622 TATGAGAATGTGCTTCGGA 58 1183463 1183538 TCCCTAAACCTTCAACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 kraken FBgn0020545 FBtr0078016 3 1 1 224 2L 853236 853254 TGGGAGGAGTTCTCTATCG 59 853707 853726 GAAGATGAAGTACTGCATGC 58 NA DesignNoJunction Drosophila melanogaster 50 dock FBgn0010583 FBtr0078013,FBtr0078015,FBtr0078014 2 3 3 102 2L 831533 831552 GTATTATGGAGCCATCACCC 59 831616 831722 GTCTCCCATGTTAGTCTCAC 59 NA Drosophila melanogaster 50 CG3876 FBgn0031284 FBtr0078039 2 1 1 83 2L 818626 818705 AGTCTATACTTTCTTCGCGT 58 818562 818580 TAGAAGTCCCAGTAGGAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snmRNA:430:CR33745 FBgn0053745 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 su(f) FBgn0003559 FBtr0113732,FBtr0113733,FBtr0113734 1 3 5 277 XHet 78861 79328 ATATGCTGAGAATGTGGGC 59 79569 79587 ATAGTAGCTCTACGCTGAC 57 NA DesignRelaxed Drosophila melanogaster 50 CG2893 FBgn0040030 FBtr0113766,FBtr0113767,FBtr0113768,FBtr0113769 2 4 4 61 XHet 9377 9397 GTATTTAACATCCTGGCAGTG 59 9420 9495 AAGGGTATTGTCATGCCAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CR32661 FBgn0030356 FBtr0073593 2 1 1 71 X 11812357 11812376 ATTCATTCACGAACAGAGTG 58 11812241 11812259 ATTAGTTTGGACATGTGGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG14619 FBgn0031187 FBtr0077349,FBtr0077348,FBtr0077346,FBtr0077347,FBtr0077350 3 5 5 124 X 21868684 21868703 TTATGAACTCGGTCATCCAG 59 21868790 21868868 GAGTTTGGCAAATTCGTGG 59 NA Drosophila melanogaster 50 CG12995 FBgn0030826 FBtr0074401,FBtr0074402 3 2 2 72 X 17103956 17103974 ACTGATGATCCTTCTGGGT 59 17103902 17103920 ATTGGAGGACACATCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9992 FBgn0030744 FBtr0074308,FBtr0074306,FBtr0074310,FBtr0074307,FBtr0074309 3 5 5 94 X 16277004 16277022 AGTCCTACTTCCGAGACTG 59 16276866 16276946 ACAAAGTTGTGCAAGTCCT 59 NA Drosophila melanogaster 50 CG9413 FBgn0030574 FBtr0073943,FBtr0073944 2 2 2 91 X 14482758 14484291 GGAACTATGATAGGGTCTGG 58 14482686 14482705 GCAAGCCAGATTATAAAGCT 58 NA Drosophila melanogaster 50 CG12721 FBgn0030373 FBtr0073637 2 1 1 79 X 11966601 11966619 CAATCTAGATGGATGGCGA 58 11966540 11966558 TTCTTACGCTTCTTTGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32708 FBgn0052708 FBtr0071286 1 1 1 60 X 8980570 8980590 CAATTCTATGACTCGCTATGG 58 8980610 8980630 TTAGATGGACCCACTTAAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12541 FBgn0029930 FBtr0071031,FBtr0110994 1 2 2 169 X 6927337 6927422 GAGTCTTTCAGAAGAATGGG 57 6927187 6927205 CTGTTGTGAATCCATCGTC 58 NA Drosophila melanogaster 50 Spt6 FBgn0028982 FBtr0070896 3 1 1 80 X 6163485 6163568 ATCTTTACAGACGCATCAC 57 6163612 6163630 CTCGTACTTTGAGAAGTCG 57 NA Drosophila melanogaster 50 CG32786 FBgn0052786 FBtr0070614 1 1 1 60 X 3837362 3837380 TAATTTAGAACTGGCGGTG 57 3837493 3837511 TTGGTTCAAGATCCTCTGG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 msta FBgn0053548 FBtr0070422 1 1 2 61 X 2101645 2101663 CTACACCAAGATCCTCTGG 58 2101602 2101620 AGTGCTTGGTCATCTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 wapl FBgn0004655 FBtr0070430,FBtr0070429 2 2 2 96 X 2045180 2045317 CCTTACATCCAGCTTGGAG 59 2045102 2045120 GTGCTCGTAGATGTAGTCG 59 NA Drosophila melanogaster 50 arm FBgn0000117 FBtr0089992,FBtr0089989,FBtr0089991,FBtr0089988 2 4 5 93 X 1787501 1787519 CAGAAGAAGCATATGAGGG 57 1786143 1787446 GTATCATATCCTTGCTGATGG 58 NA Drosophila melanogaster 50 CG3038 FBgn0040373 FBtr0070107 2 1 2 100 X 139376 139459 AAAGAGAACTCTTAGCCGT 58 139294 139312 TTCTTCCAGTTTGCTTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 pho FBgn0002521 FBtr0089204,FBtr0089205 3 2 2 101 4 1194715 1194795 AGACAATACAGACTCGACTG 58 1194633 1194651 TTACAACCCTTATGTGGGC 59 NA Drosophila melanogaster 50 CG11897 FBgn0039644 FBtr0085387,FBtr0085386 1 2 2 80 3R 24989869 24989950 CAACGTTGATCCAGAAACC 59 24989992 24990012 GCTATAGTCAATACAGTGCAG 58 NA Drosophila melanogaster 50 CG4572 FBgn0038738 FBtr0083861,FBtr0083860,FBtr0083862 2 3 3 60 3R 15688809 15688827 GTGGGCAATAAGACATTCC 58 15688767 15688785 TCTTCAAGTGAAGTTCCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 beat-IIa FBgn0038498 FBtr0083453 2 1 1 131 3R 13153084 13156753 CATGCAAGTTGTTGAACTG 57 13152971 13152989 GTAAATGTGAGTTCTGCCC 58 NA Drosophila melanogaster 50 CG6752 FBgn0038296 FBtr0083029 3 1 1 92 3R 11019523 11019541 GATGCTAGGTTGGGATCAG 59 11019377 11019469 AAGGTAAAGCGTAGTATCCAC 59 NA Drosophila melanogaster 50 trx FBgn0003862 FBtr0082948,FBtr0082947,FBtr0082950,FBtr0100277,FBtr0082949 1 5 5 81 3R 10091189 10091208 ATGTTGGAGTCTTCAGATCC 59 10091050 10091145 TCGATAACCATTTCACCCG 59 NA Drosophila melanogaster 50 CG31345 FBgn0051345 FBtr0082689 2 1 1 90 3R 8637672 8637691 ATCGATGAAATGTTCTCCAG 57 8637369 8637447 TATTCATAGGAGGACGCAG 58 NA Drosophila melanogaster 50 CG6950 FBgn0037955 FBtr0082522,FBtr0082519,FBtr0082520 1 3 4 114 3R 7647072 7647092 CGAGGTGATCATTATTGAACC 58 7646919 7646937 GCTTATTGGTCCCTCTGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Jupiter FBgn0051363 FBtr0082456 2 1 6 159 3R 7418218 7418236 TTTGGTCAGAACACAGAGG 59 7417723 7418096 TATTGCGGAAGACTGATCTC 59 NA Drosophila melanogaster 50 CG11999 FBgn0037312 FBtr0078807 1 1 1 146 3R 1180312 1180330 TACTTCTTACAGGACTGGC 58 1180057 1180075 CAGATCCGTACTTGACGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpx FBgn0041605 FBtr0078898,FBtr0078902,FBtr0078899,FBtr0078901,FBtr0078897 1 5 15 192 3R 110112 120843 ATTAAGTGCCGTTAAAGGC 58 120999 121298 GATGTTGTACTTATCGCGA 57 NA DesignRelaxed Drosophila melanogaster 50 CG9231 FBgn0036887 FBtr0074972 2 1 1 61 3L 19578682 19578700 CATTATGGTGTACAGTGGC 58 19578639 19578657 GATTCATCTTTGTGACGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6664 FBgn0036685 FBtr0100439,FBtr0075294,FBtr0075295,FBtr0075293 2 4 4 72 3L 17008132 17008150 CAAGACCAAGTGCAAAGTG 59 17007996 17008097 TTTGGCTTGAATGATGACTG 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 Eig71Ec FBgn0004590 FBtr0075586 3 1 1 148 3L 15644933 15645029 TTGTCGATTGACACTCGAG 59 15644803 15644821 TCCTACGAGTAGTTCGAGG 59 NA Drosophila melanogaster 50 CG8757 FBgn0036380 FBtr0075803 3 1 1 131 3L 13834593 13834611 TTGATACGGTCATCTTGCC 59 13834406 13834501 TATTATGGACCTGAACATTGGG 59 NA Drosophila melanogaster 50 CG7557 FBgn0036159 FBtr0076174,FBtr0076175 1 2 2 60 3L 11439449 11439467 CAGGAAGCTATGAAGACCG 59 11439491 11439509 GTAGTAACAGCAATCGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hay FBgn0001179 FBtr0076253,FBtr0114599 3 2 2 116 3L 10626349 10626367 TTTCATCTATGGTCCCACC 58 10626504 10626522 AAATCGAAACTGGTGTCTG 57 NA DesignNoJunction Drosophila melanogaster 50 Oseg1 FBgn0035891 FBtr0076663 3 1 1 114 3L 8402228 8402246 ATATTCGGTTAAGGAGCCA 58 8402074 8402151 GATATCGTAAAGCACATCGG 58 NA Drosophila melanogaster 50 nmo FBgn0011817 FBtr0076759,FBtr0076754,FBtr0076757,FBtr0076756,FBtr0076755,FBtr0076758 3 6 6 141 3L 8040250 8040352 GTCTTCGATCCGGATAAGC 59 8040457 8040475 AATCAGCCGTATACTGACG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13721 FBgn0035554 FBtr0073328 1 1 1 60 3L 4497249 4497270 CCATACTATGGAGGTTACTACG 59 4497210 4497229 AGAAGTAGTGTCCATAGTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10433 FBgn0034638 FBtr0071690 2 1 2 255 2R 17494114 17494195 AGTTACTACATGCTGCAGG 59 17493603 17493621 CATTCTTGCAATCCGAACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5323 FBgn0034362 FBtr0086706 3 1 1 109 2R 14502924 14502942 TACGTTCAACACGAATTGG 58 14503112 14503130 ATCTGATCCTCATTGGGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG6967 FBgn0034187 FBtr0086977 1 1 2 74 2R 12950579 12950597 CAAACAATGCAACCCAGAG 59 12950699 12950717 CTTGGCGGATAATATGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 Fen1 FBgn0025832 FBtr0087075 1 1 1 60 2R 12742011 12742032 CAACACCTATCGGGATATAGAG 59 12741972 12741990 CACGGTGTATTTGCTAGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6145 FBgn0033853 FBtr0087687,FBtr0087685,FBtr0087686 2 3 3 60 2R 9426355 9426492 AGCTAGTGACCTTTAAAGATGG 59 9426316 9426336 CAGACGATAAAGTCAATCCGA 59 NA DesignRelaxed Drosophila melanogaster 50 CG3814 FBgn0025692 FBtr0087814,FBtr0087813 2 2 2 179 2R 8763437 8763613 TATTGATGTGCCAATTGCTG 59 8763215 8763233 AGTTAAGAGGCGTCTTACG 59 NA Drosophila melanogaster 50 achi FBgn0033749 FBtr0087942 3 1 2 87 2R 8400761 8400879 CAGTGTCATCTACAGCTGG 59 8400692 8400710 GATCATGGTTGCTTGAAGC 59 NA Nonspecific Drosophila melanogaster 50 Cam FBgn0000253 FBtr0088002,FBtr0088001 2 2 2 95 2R 8156862 8156880 GAGAAACTCACAGACGAGG 59 8156936 8161287 CATCATAGTCACGAATTCTTCG 59 NA Drosophila melanogaster 50 luna FBgn0040765 FBtr0088210 3 1 1 247 2R 6877164 6877182 AGTCTACACGAAGAGTTCG 58 6870781 6870799 ATGGCCCTGCTTAAATCTC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 2 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421092 TAGTAAGGTAGCAAAGTAGGG 58 NA Drosophila melanogaster 50 Pld FBgn0033075 FBtr0114492,FBtr0085996,FBtr0085998,FBtr0085995,FBtr0085999,FBtr0085997 3 6 6 81 2R 2141752 2142360 ACATTCAGGGTTACTTGGT 58 2142405 2142423 CCCTCCTTACTAGTTCCAG 58 NA Drosophila melanogaster 50 dl FBgn0000462 FBtr0081005,FBtr0081006,FBtr0081007 3 3 3 81 2L 17442329 17442416 GATCCGTTTAAGACTGGCT 59 17442266 17442285 ATACTTGAAAGCACAATCGC 59 NA Drosophila melanogaster 50 CG16848 FBgn0032522 FBtr0080501 2 1 1 60 2L 13412898 13412916 CGTGGATGATTGTGTACAG 58 13412938 13412958 CTTAAGGACTCCTTCGTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16824 FBgn0040973 FBtr0113336 1 1 1 78 2L 13293101 13293119 AGAAGAAGCCTCTAAAGGC 58 13293161 13293179 TTCTGCTTCTGTTTGAAGG 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15483 FBgn0032457 FBtr0080402 2 1 1 60 2L 12760517 12760535 GAACCAATGGGCTTATCGA 59 12760475 12760493 CGAGAACCGTACATCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4851 FBgn0032358 FBtr0080212 1 1 1 80 2L 11280747 11280827 TCATTGTGCTGGGATACTC 59 11280871 11280889 AGGTCTTCACATTGTGCTC 59 NA Drosophila melanogaster 50 CG17140 FBgn0032306 FBtr0100837 1 1 2 113 2L 10843819 10843838 TCACCAACAATGATCTTCTC 57 10843657 10843743 TTTGAAAGCTCACTTCGTC 58 NA Nonspecific Drosophila melanogaster 50 CG13795 FBgn0031937 FBtr0079506 1 1 1 89 2L 7725460 7725542 CTTTAAAGGCATGGGATATGTG 59 7725392 7725410 ATGAACAGAAGTGGAACCG 59 NA Drosophila melanogaster 50 CG9527 FBgn0031813 FBtr0114603,FBtr0089948 1 2 2 80 2L 6445909 6445928 GGATATGGACACAATTCTGC 58 6445784 6445867 GCATTAAGTAGATTGAGCGG 58 NA Drosophila melanogaster 50 Arc-p20 FBgn0031781 FBtr0079200 1 1 1 61 2L 6125580 6125598 GCTACGACATAAGCTTCCT 59 6125620 6125641 CAGTTTGTGCTTATACATCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9140 FBgn0031771 FBtr0079216 1 1 1 80 2L 6061112 6061195 CATGACTCGATTTGTTAAGGG 59 6061052 6061070 TGTCCCTCAATTTGTTTGG 58 NA Drosophila melanogaster 50 toc FBgn0015600 FBtr0110903,FBtr0077665,FBtr0077663,FBtr0077662,FBtr0077664 1 5 6 90 2L 3071761 3080665 TTCATGTCCAAAGAGCTGG 59 3071689 3071710 GCAATATAGTCTTCTCTAGCGT 59 NA Drosophila melanogaster 50 Rbp9 FBgn0010263 FBtr0077639,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0077638,FBtr0077636,FBtr0077635 1 7 7 80 2L 2963120 2963232 GCAATCTGTTAAGGTGATTCG 59 2963273 2963292 TCTTCGTAATTCGTCATGGT 59 NA Drosophila melanogaster 50 CG15452 FBgn0031130 FBtr0077292 1 1 1 135 X 20616430 20616708 GATTCGCAACGCATTAAGG 59 20616313 20616331 TTAGTGGATTGTGCATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp19a FBgn0031109 FBtr0077300 3 1 1 127 X 20286980 20286998 CCAAGTATCCGAAGGTCAG 59 20287089 20287182 CTTTCCCTTCTTGATTGCC 58 NA Drosophila melanogaster 50 Grip84 FBgn0026430 FBtr0074775,FBtr0074777,FBtr0074776 3 3 3 80 X 19457157 19457176 ATCTCCAAGTACCAAATGCT 59 19457034 19457114 TTCCTTCCAAATCTTGCAC 58 NA Drosophila melanogaster 50 RpII215 FBgn0003277 FBtr0073542 2 1 1 147 X 11461192 11461210 AACAAGGTGAACCGTATCC 59 11460999 11461081 CACAAGCAATAACCTGGGA 59 NA Drosophila melanogaster 50 ovo FBgn0003028 FBtr0070740 3 1 4 79 X 4959929 4960106 CAAACAATAGTCTCGACGC 58 4960149 4960167 AATATCGATCTTGGCCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 snoRNA:Psi28S-2562 FBgn0082986 FBtr0113585 2 1 1 60 3R 16648651 16648669 GCGAATCTGATATCGTGGT 59 16648691 16648711 GGGCAAATCATTGATACTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17189 FBgn0039485 FBtr0085105 3 1 1 97 3R 22928030 22928048 CCAAATGCGAATAGATGGT 57 22928106 22928187 CCAGATCATCTATTTCCATGAC 58 NA Drosophila melanogaster 50 CG6154 FBgn0039420 FBtr0084992,FBtr0084991 1 2 2 81 3R 22095465 22095485 ATATCAACCACATAAGGGAGG 58 22095528 22095680 TTGGGCACTAAGTTGACTC 59 NA Drosophila melanogaster 50 CG11453 FBgn0038734 FBtr0083791 3 1 1 99 3R 15609841 15609859 GAGTCATGTCTACACGCTC 59 15609920 15610000 AGTTTCGGGTACATAGTACAG 58 NA Drosophila melanogaster 50 CG10326 FBgn0038453 FBtr0083336 2 1 1 109 3R 12470098 12470280 CCACAGTGTTTGTAATCGT 57 12470353 12470371 CATGAGGATGAGTAGGGTG 58 NA Drosophila melanogaster 50 CG11033 FBgn0037659 FBtr0081970 3 1 1 186 3R 4883799 4884056 GATCTCACCGTAGCTTTCC 59 4884206 4884224 TCATCTGCAGGTTCTTCTG 59 NA DesignRelaxed Drosophila melanogaster 50 Alh FBgn0037471 FBtr0081613,FBtr0081612 1 2 6 82 3R 2947047 2947065 GATTTGGGAATGTGACCAC 58 2946847 2947004 GCAAATATAGCAAGTCTTCGAG 59 NA Drosophila melanogaster 50 PEK FBgn0037327 FBtr0078770 3 1 1 97 3R 1286479 1286581 ATACTTCCATTCCTGGACC 58 1286400 1286419 CTATCTGGATAGAGGTGGAC 58 NA Drosophila melanogaster 50 CG5047 FBgn0037008 FBtr0078215 1 1 1 60 3L 20513090 20513108 AATGCCAAGGAGCTAAGTG 59 20512989 20513066 CCGGAGGAATCATCAAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33255 FBgn0053255 FBtr0074997 2 1 1 121 3L 19417906 19417924 GAACTACAATGGAATCGCC 58 19418009 19418405 GAATGAGAAGAACTAGCGC 58 NA DesignNoJunction Drosophila melanogaster 50 mbf1 FBgn0026208 FBtr0075393 2 1 2 234 3L 16568068 16568296 AACAGAAGTATGGTGCTGG 59 16568863 16568881 AAGTTGTTTGGAATACCGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG32150 FBgn0052150 FBtr0075535 1 1 2 101 3L 15832748 15832948 ATAATCCGAAAGATGGCGG 59 15832665 15832683 CATAGCACCGCTCTATTCC 59 NA Drosophila melanogaster 50 CG7945 FBgn0036505 FBtr0075601,FBtr0075599,FBtr0075600 3 3 3 63 3L 15514968 15514987 CAGAAGAACATCAAGAAGCG 59 15514924 15514945 GGCTAACAGTTTGCTTATTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ent3 FBgn0036319 FBtr0075935 3 1 1 82 3L 12848047 12848065 CATTAACTCGCCGTTTGTG 59 12848111 12848303 CTCCATCAATCTCCTGCTC 59 NA Nonspecific Drosophila melanogaster 50 TrpA1 FBgn0035934 FBtr0076586,FBtr0113155 1 2 2 92 3L 8893687 8893760 AGAATGGCGACTTTAATGC 58 8893613 8893631 ATAGATAGTCCAGAGCGTC 57 NA Drosophila melanogaster 50 5SrRNA:CR33368 FBgn0053368 FBtr0086360 1 1 1 62 2R 15648191 15648209 AATACATCGGTTCTCGTCC 59 15648147 15648165 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30169 FBgn0050169 FBtr0072302 2 1 1 85 2R 20414565 20414643 GAAGGTCCAGGAACTATGG 59 20414692 20414769 TTTCCACTTTCCAATCGGA 59 NA Drosophila melanogaster 50 CG18606 FBgn0034428 FBtr0086513 1 1 1 64 2R 15175934 15175955 GGTCATACTTTCCAAATGTCTC 59 15175980 15175998 TGGTGATGAACAGAGTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 resilin FBgn0034157 FBtr0087024 2 1 2 123 2R 12669433 12669451 AATTACCAGGTTGAGGACG 59 12669538 12669683 ACTCCACAATTTGCTTCCT 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG17390 FBgn0033939 FBtr0113081 2 1 1 127 2R 10349497 10349515 GTGAATACTGCTCCAAGCT 59 10349606 10349700 CTTCAAGTGGTCACTCCTG 59 NA Drosophila melanogaster 50 CG34219 FBgn0085248 FBtr0112412 1 1 1 60 2R 4806217 4806235 TACACGCTAAACGATGAGG 59 4806175 4806193 AGTGATACTCCTGAACCAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12551 FBgn0033045 FBtr0086048 2 1 1 87 2R 1808614 1808632 ATTCGTCTATGAGTCACCC 58 1808683 1808701 GACATCGGATGTGGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5337 FBgn0032249 FBtr0080043 1 1 1 90 2L 10433910 10433928 TAATCCCAATACCGAGGTC 58 10433764 10433856 GAGATCACTCATACCCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15386 FBgn0040715 FBtr0077842 2 1 1 60 2L 2216627 2216646 CTGTTTATGAAGAAGCTCCA 57 2216586 2216604 ACGATGACCTGTAGATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31974 FBgn0051974 FBtr0078150 2 1 1 124 2L 141333 141407 CACATACGAATTGTTTCTCG 57 141228 141249 CCACGTCTTTATAGTCTTTAGG 58 NA Drosophila melanogaster 50 CG2657 FBgn0031209 FBtr0113008 3 1 1 98 2L 23986 24004 TTTGTCTTCGGAGCTATCC 59 23851 23869 GTGTAGAGTACGTATGGGC 59 NA DesignNoJunction Drosophila melanogaster 50 snoRNA:Me18S-A1576 FBgn0025881 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snmRNA:430:CR33736 FBgn0053736 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG17162 FBgn0039944 FBtr0113724,FBtr0113726,FBtr0113723,FBtr0113725,FBtr0113722 1 5 5 60 XHet 67548 67566 TACTCACTTAAATCGCCCA 58 66298 66316 TTATAGACGTTTGATGCGG 57 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG32820 FBgn0052820 FBtr0070053,FBtr0070054 2 2 2 60 X 21484156 21484174 AACAACTTGAGGAACTCCC 59 21484114 21484132 CCTGCTTCGAGATCTTCTC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 sol FBgn0003464 FBtr0089677,FBtr0089679,FBtr0089678,FBtr0089676 3 4 4 85 X 21228148 21228166 AGAGCTACAATGTGGTGTC 59 21228212 21228302 GAGAACGATGATTACTTGTCTC 58 NA Drosophila melanogaster 50 CG1835 FBgn0031127 FBtr0077278 1 1 2 166 X 20540413 20540431 TAAGGAGCTTGCCTTTGAG 59 20541800 20541818 TTACACGCATTTCCTTTGC 59 NA Nonspecific, DesignNoJunction, InUTR Drosophila melanogaster 50 l(1)G0004 FBgn0027334 FBtr0077298 1 1 1 84 X 20263098 20263116 AATTCACCATCGAGAACGT 59 20263164 20263182 TGAATGTTCTGGTAGCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sw FBgn0003654 FBtr0089400,FBtr0089403,FBtr0089409,FBtr0089408 1 4 13 153 X 20101663 20103201 TGAATTCACAGGAGACGAC 59 20101528 20101548 TTCAGTCTCCTTCTTGATCTC 58 NA Drosophila melanogaster 50 Sdic2 FBgn0053497 FBtr0089610 3 1 1 101 X 20076855 20076873 ATATCCACGCACTACAACC 59 20076705 20076790 CTTTGTGTCCTTTAGCGAC 58 NA Nonspecific Drosophila melanogaster 50 CG15322 FBgn0031088 FBtr0070005 1 1 1 109 X 20031044 20031505 TCCACTTTATGCGTATCCG 59 20031578 20031596 TGTATTTGTGTTGCTGCTG 58 NA Nonspecific Drosophila melanogaster 50 CG14235 FBgn0031066 FBtr0074817,FBtr0074815,FBtr0074816 3 3 3 198 X 19638353 19638371 CATCGCTATAGCTATCGCC 59 19635080 19635098 GGAAGTCGATGTACGACTG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG7914 FBgn0030995 FBtr0074696 2 1 1 106 X 19086902 19086920 AACGAGGAGGATATGAGTC 57 19086814 19086832 CTGTAGTTCCAGAACTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14193 FBgn0030994 FBtr0074670 3 1 1 61 X 19084455 19084474 AAAGGATGAATCCAAGGAGG 59 19084498 19084516 AATTGTGAACTCCCATGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32549 FBgn0052549 FBtr0074573,FBtr0074575,FBtr0074574 2 3 6 163 X 18301908 18302558 CCTACCAATGCGAGATGAG 59 18286877 18286896 GGTGTAGTCCATATCGAAGC 59 NA Drosophila melanogaster 50 CG15814 FBgn0030873 FBtr0074471,FBtr0074469,FBtr0074470,FBtr0074468 3 4 4 124 X 17743080 17743160 CAGCTATTGGCTACTACAC 57 17742974 17742992 GTAGGTGTTCTCAATGACG 57 NA Drosophila melanogaster 50 f FBgn0000630 FBtr0110991,FBtr0074423,FBtr0074420,FBtr0074422 2 4 6 116 X 17166631 17166651 AAATACAACGTAGGACGATCC 59 17166729 17166933 GTTCAAATGGTGGTTGCTG 59 NA Drosophila melanogaster 50 CG12996 FBgn0030835 FBtr0074419 2 1 1 139 X 17144638 17144656 GATTAGCAGGAACCTGGAC 59 17144759 17145085 AAATTCGAACTCTGATGGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG8918 FBgn0030823 FBtr0074403 2 1 1 152 X 17095229 17095248 ATAATAACCTGAAGCCCTGG 59 17095039 17095114 TATCCCAGTGCTCATTTGG 59 NA Drosophila melanogaster 50 CG9699 FBgn0030772 FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369 2 6 7 80 X 16588098 16588116 CATTGAGGCGGTTAAATGC 59 16580763 16580781 CCTATGTAATCGCGATCCT 58 NA DesignNoJunction Drosophila melanogaster 50 Nup153 FBgn0061200 FBtr0113475,FBtr0074284 3 2 2 60 X 16494295 16494313 GGAAGAGGATGAATCCTCG 59 16494337 16494421 CATGATGGAGTTGTTGCTG 59 NA DesignRelaxed Drosophila melanogaster 50 Anxb11 FBgn0030749 FBtr0074303,FBtr0074302 2 2 2 116 X 16312472 16312490 CTAGGGAGCTACTGAAAGC 59 16312305 16312395 CCTCGTACTCTTGGAATATCAG 59 NA Drosophila melanogaster 50 Traf3 FBgn0030748 FBtr0074275,FBtr0074274,FBtr0074273 3 3 3 145 X 16310576 16310596 CCAGTGTCCAGAATATAAGGG 59 16310758 16310836 TATATCCAGCCGTAGAGCA 59 NA Drosophila melanogaster 50 CG4239 FBgn0030745 FBtr0074270,FBtr0074269,FBtr0074268 1 3 3 243 X 16281095 16281113 AATGTTTCCGTTCTTCGAC 58 16281320 16281395 GTAGAAGACGACGTACCAC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 vap FBgn0003969 FBtr0074141,FBtr0074143,FBtr0074142,FBtr0074140 1 4 4 80 X 15894967 15894985 ACACGATCTTTGGTCATGG 59 15894840 15894923 CATGTATTGTTCCTTGCCG 59 NA Drosophila melanogaster 50 CG32584 FBgn0052584 FBtr0074069,FBtr0074070 1 2 2 60 X 15469443 15469464 GATGTCAATAACTCACTTGAGG 58 15469404 15469422 TTTGAGCTTCTGATTCCAC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 mud FBgn0002873 FBtr0073907,FBtr0073905,FBtr0073906 3 3 3 82 X 14142425 14142580 CCTAGCACATAACTATCCCG 59 14142624 14142643 TGTAAACGTAAAGGCAATCC 58 NA Drosophila melanogaster 50 CG11585 FBgn0030543 FBtr0114508 3 1 1 60 X 14083688 14083706 CCATTCTGATTCTGAGCCT 59 14083728 14083748 AGATAGGTGTTACTCAATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34346 FBgn0085375 FBtr0112555,FBtr0112554 2 2 2 239 X 13779252 13779353 GAATCCCTCAAGGTCAAGG 59 13779031 13779049 AGATGTTGCTGAGGTTGAG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG11071 FBgn0030532 FBtr0073829 1 1 1 288 X 13748717 13748735 CATCCTCAATTTCTTGCGC 59 13748168 13748186 CTTCGATAGATAGTCCGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG2209 FBgn0030441 FBtr0073717 2 1 1 60 X 12916429 12916447 GATCCAGAATTCGAATGCG 59 12916469 12916489 TCATAGTCTTCAAGGATTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32644 FBgn0052644 FBtr0073714 3 1 1 81 X 12862153 12862270 TCAGTGGACAAGAGTTATTCG 59 12862313 12862331 CCAACATCAACAAGCTTCG 59 NA Drosophila melanogaster 50 LIMK1 FBgn0041203 FBtr0073661,FBtr0073659,FBtr0073660 3 3 3 130 X 12482056 12482074 CCCGAGATGATGAAAGGTC 59 12481875 12481893 AGACTGAAGTCCGAATTGC 59 NA DesignNoJunction Drosophila melanogaster 50 cac FBgn0005563 FBtr0073587,FBtr0073586,FBtr0073584,FBtr0073585 2 4 10 200 X 11848297 11856053 GTCGAACTCAATCAACGTC 58 11846240 11848134 TTGATATTCCCGAACACCTG 59 NA Drosophila melanogaster 50 CG32666 FBgn0052666 FBtr0073507,FBtr0073508 3 2 2 124 X 11445270 11445288 GACCTTCCTCAACATCTCG 59 11445376 11445818 CATTCATGCGATCGTTTGG 59 NA DesignRelaxed Drosophila melanogaster 50 Kap3 FBgn0028421 FBtr0112931,FBtr0112934,FBtr0112933,FBtr0112932,FBtr0073459 3 5 5 175 X 11231085 11231169 GCAATATAAGATTGGATCGCTG 59 11230931 11230949 TGATGTCCAGGAAATCGTC 59 NA Drosophila melanogaster 50 CG11106 FBgn0030280 FBtr0073446 1 1 1 71 X 11096551 11096569 ATTACTTTCAACGGATGGG 57 11096604 11096622 ATTGAGGACAGTAGTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11160 FBgn0030257 FBtr0073390 2 1 2 81 X 10942565 10942583 ATCGTATCAACAACGACCT 58 10942627 10942986 ACATCCCGATATCTAAGGAG 57 NA Drosophila melanogaster 50 CG2145 FBgn0030251 FBtr0073387 3 1 1 95 X 10822729 10822747 ACATCCAAGTGAATCTGCA 59 10822883 10822901 ATTCAAGGGCTTTCGAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG15295 FBgn0030220 FBtr0071508 1 1 1 66 X 10511011 10511029 TACATAGGCACCAAGAACG 59 10510963 10510981 CATCGTTCTTGAACTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2962 FBgn0030186 FBtr0071486 2 1 1 233 X 10110588 10110608 TCAAGTGGATTAGTAGTCAGC 59 10109948 10109966 CTGATGGATCACCTTGACC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG2989 FBgn0030171 FBtr0112972 2 1 2 107 X 9927488 9927506 GTACACGACCCACTAAGAG 59 9927574 9934734 GATAACGATTCGTGACAATGTC 59 NA Drosophila melanogaster 50 rdgA FBgn0085373 FBtr0112551 2 1 3 93 X 8917821 8918117 GGATTCAGCCCTATACTGG 58 8918297 8918315 CTTGTTCATGTAGTGCACG 59 NA Drosophila melanogaster 50 CG2278 FBgn0030017 FBtr0071185 1 1 1 90 X 8062922 8063011 AATGGTTACTTCGGTTCCA 58 8062850 8062868 AGGAATAGTCCGGATACGA 59 NA Drosophila melanogaster 50 CG10959 FBgn0030010 FBtr0071157 3 1 1 60 X 8044188 8044206 AGTTCAAGTGCAAGATCTG 57 8044230 8044248 ATATGAGCGGATAGACCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2129 FBgn0030008 FBtr0071155 2 1 1 78 X 8040333 8040351 GATGAGGACGAAGATGAGC 59 8040393 8040411 GTAGAGATTCGCTGGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32721 FBgn0027553 FBtr0071077 3 1 1 104 X 7620817 7620836 CATATGAGGATCCCTTCCTG 59 7620670 7620688 AGATGAACTCGTCGAAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG32726 FBgn0052726 FBtr0071059 2 1 1 112 X 7319737 7319756 CGTTTCTGTCTACTGTTCCT 59 7319578 7319596 GTGAAGTTGCGATGATGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33691 FBgn0064122 FBtr0091672 2 1 3 165 X 6766947 6771957 AACCACATGTCACTAGCTG 59 6772086 6772104 CATTACCCGAATTCGAGGA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 l(1)G0060 FBgn0027321 FBtr0070842,FBtr0070841 1 2 2 60 X 5636625 5636643 TCTGCATGACCTCATTCAC 59 5636583 5636604 GAATTTGTACATCAGATCGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CanB FBgn0010014 FBtr0070764 3 1 1 135 X 5226852 5227095 TTATTTATGAGCGTGCCAG 57 5227463 5227481 AAGTTGGAACACATGTCCA 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15471 FBgn0029726 FBtr0070733 2 1 1 60 X 4676650 4676668 GACAAGACATTCGATCACC 58 4676608 4676626 CGTGTCGTACTTTAAAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12206 FBgn0029662 FBtr0070528,FBtr0070527 1 2 3 82 X 3360656 3365918 CCCAATGTCAAGAACTATATGG 58 3360595 3360613 TATGTGTCCCTGATGATGC 59 NA Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070517,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070511,FBtr0070514 2 9 14 87 X 3215176 3215194 TCTATATCGCTCCGATTCG 58 3215244 3219972 CTGTTCTTTAAACCTTTCGC 57 NA Drosophila melanogaster 50 dnc FBgn0000479 FBtr0070512,FBtr0070517,FBtr0070520,FBtr0070516,FBtr0070509,FBtr0070513,FBtr0070521,FBtr0070518,FBtr0070515,FBtr0070510,FBtr0070519,FBtr0070511,FBtr0070514 2 13 14 81 X 3228354 3228595 CGTCGCTTAAGTTCAAACG 59 3228640 3228658 TCGGAAATCTGATTTCCCG 59 NA Drosophila melanogaster 50 per FBgn0003068 FBtr0070477 1 1 1 80 X 2585970 2586053 ACAACAAGAAATACACGGAC 58 2586096 2586114 TGAAGGACGAGTAGAAGGA 59 NA Drosophila melanogaster 50 HLH3B FBgn0011276 FBtr0070506 2 1 1 88 X 2575464 2575482 GTCCATATCCGATGGAGAC 59 2575394 2575412 TGTAATCGCGAAGATCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 phl FBgn0003079 FBtr0112818,FBtr0111025,FBtr0070401 2 3 3 145 X 2236247 2236265 CAGATCACTCCAACTCCAC 59 2236374 2236460 CTCCGCCAGAATATTCCAG 59 NA Drosophila melanogaster 50 CG4313 FBgn0025632 FBtr0070327 2 1 2 172 X 1948315 1948333 GATCTCGTACAGCATACGG 59 1948468 1948550 TGATAGGGTTCTTTCCATGG 59 NA Drosophila melanogaster 50 CG14817 FBgn0026089 FBtr0070365 1 1 1 122 X 1771133 1771151 TTGTTCAAGAAGACTGTGC 58 1771029 1771047 TAACATTACCTGCTCCTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14815 FBgn0023516 FBtr0070368,FBtr0070367 3 2 2 60 X 1761161 1761180 CCTTTAGAGGACAGAACCAG 59 1761120 1761138 GAAATGACCATCTTCAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DAAM FBgn0025641 FBtr0070241,FBtr0070240,FBtr0070239 2 3 3 81 X 1187404 1187422 CTCATGCTCGGTATACAGC 59 1187281 1187360 CAAAGAAGTCCAAATGCCTG 59 NA Drosophila melanogaster 50 CG3706 FBgn0040342 FBtr0070189 2 1 1 62 X 826120 826138 GAAGAGCTATGACGTGGTC 59 826076 826094 GTGACCATTAGTTTCTGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18166 FBgn0029526 FBtr0070096 2 1 2 101 X 374490 374958 CCTCACAAGTGGACTATCG 59 374407 374425 TTACAGTGGCCAGTTTCAG 59 NA Nonspecific Drosophila melanogaster 50 CG13377 FBgn0040369 FBtr0070106 1 1 1 66 X 152935 152953 TCATTGTACAAGGCACCAG 59 152823 152841 CTGTATACTGCGTAGGAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CR40596 FBgn0085753 FBtr0114203 2 1 1 142 U 10047393 10047411 TATGCGTAGAAGTGTTTGG 57 10047516 10047535 ACTAACTCGTTATCAACCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12423 FBgn0040038 FBtr0113685,FBtr0113686 1 2 2 94 U 1911191 1911209 AATGGATCGACCGTAATCC 59 1911267 1937080 CATGAAGCACTTTGGAGTC 58 NA Drosophila melanogaster 50 CG41041 FBgn0069966 FBtr0114295 2 1 1 72 U 403049 403067 CGTATGGGACAACTCTTCC 59 402995 403013 TTCTGTTAACTCAGGGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Zyx102EF FBgn0011642 FBtr0089216,FBtr0089214,FBtr0089212,FBtr0089210,FBtr0089215,FBtr0089211,FBtr0089213 3 7 7 82 4 1079778 1079796 TAACCAGACAACGAATCCT 58 1079118 1079732 ATGTAGAAGAGCTCTTGCC 59 NA Drosophila melanogaster 50 CG11076 FBgn0039929 FBtr0089220,FBtr0089221 3 2 2 60 4 1051045 1051063 ATAAACAACCGCTACCAGG 59 1051003 1051021 TTGGGTAGCGTTAGATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eph FBgn0025936 FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086 2 4 5 109 4 640794 640888 TGCTCAACAGATATCCAGG 58 640961 640979 TTATAGTGTCGAGTTGCCG 59 NA Drosophila melanogaster 50 Eph FBgn0025936 FBtr0089082,FBtr0089083,FBtr0089084,FBtr0089086 2 4 5 109 4 640794 640888 TGCTCAACAGATATCCAGG 58 640961 640979 TTATAGTGTCGAGTTGCCG 59 NA Drosophila melanogaster 50 Rad23 FBgn0026777 FBtr0089121,FBtr0089122 3 2 2 96 4 330247 330325 AGTATTGCAGCAGATTGGT 59 330384 330403 GTCAATCGGTTGATTAAGCA 58 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 2 7 7 83 4 208987 209060 CGGATCATAGACTTACGGA 57 208922 208940 CGAAGCATGGTTTAGTCAG 58 NA Drosophila melanogaster 50 pan FBgn0085432 FBtr0100246,FBtr0089157,FBtr0089160,FBtr0089161,FBtr0089162,FBtr0089158,FBtr0089159,FBtr0100245,FBtr0089156 3 9 10 81 4 103362 106346 TCCTAAGATGGGCTTAACTC 58 106387 106408 CATATCTGAACTTAGCATTGGG 58 NA Drosophila melanogaster 50 Hsromega FBgn0001234 FBtr0084059,FBtr0084057,FBtr0084058 2 3 3 60 3R 17123904 17123922 AATGACACATCGTCTCTGG 59 17123946 17123964 AACTGGCAGGGTATATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 awd FBgn0000150 FBtr0085864 1 1 1 95 3R 27571181 27571199 TCTGAATGTGGTCAAGACC 59 27571104 27571122 ACCTGAATGCAGAAGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycG FBgn0039858 FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799 3 5 5 97 3R 27426466 27426484 ACTTCCACATCAAGGAGTC 58 27426317 27426407 ATCAGGAATCCTCATGTACTG 58 NA Drosophila melanogaster 50 gskt FBgn0046332 FBtr0085784 2 1 1 60 3R 27198865 27198883 CTGCTCAAGGTACTATCGT 58 27198906 27198925 CTTGGTGGTATAGTCAGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1544 FBgn0039827 FBtr0085755,FBtr0113311,FBtr0085756 2 3 3 87 3R 27027534 27027614 GAAGACTTTAACATCCATCCC 58 27027663 27027681 ACCAATCGATCTTGACTCC 59 NA Drosophila melanogaster 50 Prosalpha3T FBgn0039819 FBtr0085738 3 1 1 66 3R 26948741 26948761 GATATCAAACAGGCGTATACG 58 26948695 26948715 CCATGTAAAGAAACGATACCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31012 FBgn0027598 FBtr0085704,FBtr0085706,FBtr0085707,FBtr0085705 2 4 4 136 3R 26650596 26650683 GTTCCTATGACTGGTAACCT 58 26650779 26650800 GATTCAGGTAGTTGATTAGCAC 58 NA Drosophila melanogaster 50 CG2224 FBgn0039773 FBtr0085691 1 1 1 101 3R 26283114 26283193 TGGATTCATACTCATCCAACTC 59 26283034 26283052 CACAATAGCCAAAGCTTCG 59 NA Drosophila melanogaster 50 CG2217 FBgn0027544 FBtr0085630 3 1 1 255 3R 26244956 26244977 CGCCGGATTATATTACTATCAC 58 26244652 26244671 GGCGAAACATATAACTACGA 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG15531 FBgn0039755 FBtr0113309,FBtr0085572 3 2 2 112 3R 26021246 26021264 CGGTCTTCTGAAGTACTCG 59 26021090 26021171 ACAGCAGGACATAGAATCTC 58 NA Drosophila melanogaster 50 Tace FBgn0039734 FBtr0085551,FBtr0085550 1 2 2 125 3R 25826681 25826757 GCATATGGATCACGATAGC 57 25826846 25826864 ATGTGATAGGTTTCCTCCG 58 NA Drosophila melanogaster 50 Trc8 FBgn0039668 FBtr0085430,FBtr0085432,FBtr0085429 3 3 4 98 3R 25327494 25327512 TGTCCAACTTTGGACTGTC 59 25327200 25327434 CTTGGATTAGTCTGATGGTCC 59 NA Drosophila melanogaster 50 CG31044 FBgn0051044 FBtr0085391 3 1 1 82 3R 25044252 25044272 GATAGATGGCTACTGTATGGC 59 25044315 25044334 CATTTAAATGAGCGTGAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11877 FBgn0039636 FBtr0085370 1 1 1 211 3R 24943568 24943586 TGGACTCCCTACTAATCGG 59 24943823 24943841 CTGCGATCATTTGATCCAG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 larp FBgn0040108 FBtr0089682,FBtr0089680,FBtr0089681 1 3 3 117 3R 24146994 24147108 CGATTATGAAACAGGTCAACTG 59 24146898 24146916 GAAGCTCTTCAGGTACTCG 59 NA Drosophila melanogaster 50 RpS10a FBgn0027494 FBtr0085194 2 1 1 103 3R 23478837 23478855 CAAACTACTCGATCGAACG 58 23478922 23478940 CTGTAGTTCGATCTGTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3368 FBgn0039508 FBtr0085163 2 1 1 74 3R 23111716 23111736 GTACTTACTGATGAGCTTCTG 57 23111830 23111848 AATTGGTAACACCCAATGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5467 FBgn0039433 FBtr0085028 3 1 1 132 3R 22424910 22424928 CCTCGATGAGAAGATTGTG 57 22426977 22426995 TATAATTCGCTCCTTGCAG 57 NA DesignNoJunction Drosophila melanogaster 50 CG31082 FBgn0051082 FBtr0085022 2 1 1 60 3R 22412152 22412170 TCATTGGGAGAAGGTAGTG 58 22412194 22412212 TGGAGTATATCTCCTCGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33970 FBgn0053970 FBtr0100012 3 1 2 117 3R 22174785 22175331 ATATGCCACAGGAGATAGC 58 22175410 22175430 AGAAGGAATTCTGTACGATCC 59 NA Drosophila melanogaster 50 CG4774 FBgn0039360 FBtr0084931,FBtr0084929,FBtr0084930 1 3 3 80 3R 21512088 21512108 GGATATGTTATAGTCCAGGGC 59 21511697 21512046 TCCATCCAACAGATCTGTG 58 NA Drosophila melanogaster 50 CG11875 FBgn0039301 FBtr0084812 3 1 1 233 3R 21074115 21074133 ACGTCAACGATGTATCCTG 59 21074387 21074405 AGATGACTGTCTGCTTGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG11836 FBgn0039272 FBtr0113284,FBtr0084767,FBtr0084768 2 3 3 139 3R 20897387 20897467 ACTGTGACTGTGATTGTGG 59 20897569 20897588 CTTCGTCAGTAAGGATCCTC 59 NA InUTR Drosophila melanogaster 50 veli FBgn0039269 FBtr0084787 3 1 2 93 3R 20890642 20890660 CGAATAATACCTGGAGGCG 59 20890503 20890585 TTTCTCCTTCGACAGACAC 59 NA Drosophila melanogaster 50 slo FBgn0003429 FBtr0100623,FBtr0100624,FBtr0100638,FBtr0084684,FBtr0100627,FBtr0100634,FBtr0100622,FBtr0100625 3 8 17 93 3R 20521092 20521110 AGGACATTAAGGACGAGAC 58 20521838 20528752 GTGATATCACCTAAGTCATCG 57 NA Drosophila melanogaster 50 CG6631 FBgn0039206 FBtr0084645 1 1 2 153 3R 20358307 20358402 GAACTGGACAAACTGAGGA 59 20358516 20358593 GTATAATGTTAGCATCGGTTGG 59 NA Drosophila melanogaster 50 jar FBgn0011225 FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173 3 4 6 90 3R 20079843 20080373 CCCAAACAAATTGATCAGATCC 59 20079774 20079792 CGAGTACTTCCACTTGGAC 59 NA Drosophila melanogaster 50 CG13606 FBgn0039161 FBtr0110794 1 1 2 88 3R 20009628 20009646 TACTTTAGCACCACCTTCC 58 20009698 20009716 AAGTATCTAAACCGCGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rox8 FBgn0005649 FBtr0084592,FBtr0084591,FBtr0084593,FBtr0084594 2 4 4 84 3R 19871217 19871235 ATATTCCAACTACCAGGCA 57 19870980 19871169 CCAGTTGACCTTGATTTCC 58 NA Drosophila melanogaster 50 CG17111 FBgn0039048 FBtr0084355 1 1 1 191 3R 18889892 18889910 GTACAATCCCAAGGACTGG 59 18889661 18889739 GCAGATATGAACGTTCTTTGG 59 NA Drosophila melanogaster 50 CG31281 FBgn0051281 FBtr0084339 2 1 1 60 3R 18792133 18792153 GATCAGCCTAGAGATTCTGTC 59 18792175 18792193 TGTGCTGATTCCTGTAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6678 FBgn0038917 FBtr0084148 1 1 1 176 3R 17714978 17731656 CTCCATTTGAAGTGTACGG 58 17731796 17731814 AAAGATACGGCTAAAGAGC 57 NA Nonspecific, InUTR Drosophila melanogaster 50 fit FBgn0038914 FBtr0084153 3 1 1 60 3R 17709967 17709986 CATTCTAATGCACAAGGTGG 59 17709926 17709946 TTTCTTGGTACTCTCGTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7956 FBgn0038890 FBtr0100124,FBtr0110891,FBtr0084112 2 3 3 92 3R 17350158 17350177 TGAAATCTCCGTTTATGGTG 57 17350229 17350313 GAGTATAGTCTCCCTTTAATGC 57 NA Drosophila melanogaster 50 Atpalpha FBgn0002921 FBtr0089514,FBtr0089516 2 2 8 97 3R 16794124 16794144 TTTCCTTAGCTTATGAGACGG 59 16794202 16798907 CATCGAAATCAACCTTTCGT 58 NA Drosophila melanogaster 50 CG4973 FBgn0038772 FBtr0083835 2 1 1 98 3R 15884378 15884398 ACCAAGTATGAGATTCACTCC 59 15884458 15884543 GTGCTTGCACTTTGTTACC 59 NA Drosophila melanogaster 50 Indy-2 FBgn0038770 FBtr0091938,FBtr0091937 1 2 2 80 3R 15869771 15869848 ATATACACGGAGCGATTTCC 59 15869891 15869909 CACCATCAAGGGTATCGAG 59 NA Nonspecific Drosophila melanogaster 50 CG31219 FBgn0051219 FBtr0113400,FBtr0083783 2 2 2 60 3R 15477439 15477460 CCAAATCTGGAGATCAAATTGG 59 15477479 15477499 TGCTAATGCTACTGAATAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31231 FBgn0051231 FBtr0083662 3 1 1 62 3R 14492861 14492879 TTGAGCAAGCAACTAGAGG 59 14492968 14492987 CTTCTTGTAGTTCGACTGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG5255 FBgn0038485 FBtr0083406 3 1 1 60 3R 12963929 12963947 CTATCCCGACAGGATTGTG 59 12963970 12963989 TATATCGTTGCGATACTTGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pxd FBgn0004577 FBtr0089287 3 1 1 82 3R 12853281 12853363 TTTACTCCTGATCAACTGGA 57 12853408 12853426 ATGGATGAAATGTGGTTGC 58 NA Drosophila melanogaster 50 CG31275 FBgn0063261 FBtr0083346,FBtr0083345 3 2 2 60 3R 12576906 12576924 TATTGGGTATGTGGTGTCC 58 12576864 12576883 GTTATCGAAGGATGTTTCGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14899 FBgn0038438 FBtr0083307 2 1 1 72 3R 12309016 12309034 TATCCTACACTGTCCAACG 58 12308906 12308924 TGTGCTCATTGAAGAGACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4699 FBgn0038364 FBtr0083175,FBtr0083176,FBtr0083177 2 3 3 109 3R 11622600 11623024 CTCTCGCTACCAATCACTC 59 11623096 11623115 TTCATCTCCAAATCGGTCAG 59 NA Drosophila melanogaster 50 Atx2 FBgn0041188 FBtr0083101,FBtr0083099,FBtr0083100 3 3 3 151 3R 11239224 11239300 ATTATGCATGGGTCTTCTCAG 59 11239413 11239431 TAGTTCAGTGACGAGTTGC 59 NA Drosophila melanogaster 50 Atx2 FBgn0041188 FBtr0083101,FBtr0083099,FBtr0083100 2 3 3 150 3R 11239225 11239300 TTATGCATGGGTCTTCTCAG 59 11239413 11239431 TAGTTCAGTGACGAGTTGC 59 NA Drosophila melanogaster 50 CG31392 FBgn0051392 FBtr0083088 3 1 1 92 3R 11175071 11175090 AGGAATACTCTAGCGAACCT 59 11175142 11175431 CCATCATATTGAATACTTGCCC 59 NA Drosophila melanogaster 50 CG3508 FBgn0038251 FBtr0082968,FBtr0082967 3 2 2 80 3R 10485961 10485979 TATCCAAGGAGTTTGGAGC 58 10486023 10486105 TGCGCAGAAATTGATTCTC 58 NA Nonspecific Drosophila melanogaster 50 Cyp6d5 FBgn0038194 FBtr0089765,FBtr0089766 3 2 2 120 3R 9856496 9856605 GTGTATACTCGAGACTGCT 58 9856688 9856707 GATTATGATGGGAGTACCCT 57 NA Drosophila melanogaster 50 CG34383 FBgn0085412 FBtr0112624,FBtr0112623 3 2 4 87 3R 9582374 9582619 GTCAGATCAGGAACTTGGA 58 9582670 9582688 CTCCTCAACTGAATCAGCA 59 NA Drosophila melanogaster 50 lkb1 FBgn0038167 FBtr0082813,FBtr0082812,FBtr0082811,FBtr0082810,FBtr0082815,FBtr0082808,FBtr0082809,FBtr0082814 1 8 8 283 3R 9504401 9504476 ACACGACGTAAATCAGGAG 59 9504723 9504741 TTAGTGGAGGCATCTAAGG 58 NA DesignRelaxed, InUTR Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082802,FBtr0082803,FBtr0082807,FBtr0082801,FBtr0100261,FBtr0082805,FBtr0082804 2 7 8 147 3R 9487574 9487894 GCTTTGTGGAATTCGAAGAC 59 9488069 9488087 CCATATCGATCGTCGTAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG34309 FBgn0085338 FBtr0112505 1 1 1 60 3R 9198666 9198685 TATGCCAAGGATATTAGCGA 58 9198705 9198726 CCTTACTGTTGAACAGTTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6753 FBgn0038070 FBtr0082669 2 1 1 160 3R 8467361 8467379 GAAGGACGGATATGTGCTC 59 8466962 8466980 AAAGGAGGTAGGCTAAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG18554 FBgn0038060 FBtr0082676 3 1 1 63 3R 8343798 8343816 TTCAATCCGCAGATATGGA 58 8343753 8343771 AATGCTCCTTATCGAGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL3 FBgn0020910 FBtr0082350 1 1 5 182 3R 7048285 7048303 ATCAACAAGAAGGAGGTGG 59 7048449 7048825 CAAGCTGATCGAAGAACAG 58 NA Nonspecific Drosophila melanogaster 50 Cap-H2 FBgn0037831 FBtr0082273,FBtr0082270,FBtr0082272 1 3 4 81 3R 6589610 6589631 GAACTGTTGCTAATCGATTCAG 59 6589671 6589889 GGCGTTGATCTTCTAAATCTG 59 NA Drosophila melanogaster 50 CG14683 FBgn0037822 FBtr0100412,FBtr0082267 3 2 2 60 3R 6523607 6523627 CCTAAACCCTACTAGACTGAG 58 6523648 6523667 AGTCGTCACATCTATAGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syn FBgn0004575 FBtr0089476,FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471 2 5 5 80 3R 6041342 6042794 GTGGATGAGATATCCGAGC 59 6042837 6042856 ATACTCTCGTCCATCTTTGG 58 NA Drosophila melanogaster 50 CG8116 FBgn0037614 FBtr0081905 1 1 1 147 3R 4542947 4542966 TTAATCTAAACTACGGCGAG 57 4543582 4543601 GTTAATATTACGGATGCGGT 57 NA DesignNoJunction Drosophila melanogaster 50 CG11672 FBgn0037563 FBtr0081865 2 1 1 60 3R 4116092 4116112 ACAAACTATGGACCTGTTACC 59 4116052 4116070 TGACACTTACGGCAATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7549 FBgn0037559 FBtr0110951 1 1 3 89 3R 4083214 4084123 CGGTTTAGGTTTCAGTCTG 58 4084176 4084194 TTGTAGCTAATAGCCCGTC 58 NA Drosophila melanogaster 50 Tom34 FBgn0010812 FBtr0081788 1 1 1 80 3R 3860592 3860669 GGCCAGAGAAGGAATACTG 59 3860713 3860731 CACTCACATGATACTCGCT 59 NA Drosophila melanogaster 50 Sp7 FBgn0037515 FBtr0081740,FBtr0081742,FBtr0081743 3 3 4 93 3R 3586989 3587741 ACAAGGAAGTTGTAGGAATCC 59 3587795 3587814 ATAAGACTGCTGAATCACGG 59 NA Drosophila melanogaster 50 CG2656 FBgn0037478 FBtr0081568 2 1 1 127 3R 2971293 2976781 GAGGATTTCAGTTTGGTGAG 58 2976871 2976889 AAGTCCTTAACGTTCACGT 59 NA Drosophila melanogaster 50 CG31549 FBgn0051549 FBtr0078707 3 1 1 62 3R 1458676 1458696 GTGATTGTGACTGACATTCAC 59 1458720 1458738 GAGGAACTTGGCATAGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 7B2 FBgn0041707 FBtr0078789,FBtr0100112 3 2 2 70 3R 1203302 1203320 CAGGATAGTGCTGATGTGG 59 1203353 1203372 ATCTGCATGATGTACTGCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(3)82Fd FBgn0013576 FBtr0078811,FBtr0078817,FBtr0078814,FBtr0110932,FBtr0078813,FBtr0100197,FBtr0078812,FBtr0078818,FBtr0078816,FBtr0110933,FBtr0078815,FBtr0078809,FBtr0078810,FBtr0100199 1 14 15 114 3R 1100031 1100465 GAGCACAACGTATTTGGTG 59 1099935 1099953 AATGGAACACCTTGAAGCT 59 NA Drosophila melanogaster 50 dpr16 FBgn0037295 FBtr0110950,FBtr0078772 3 2 2 132 3R 992138 992588 CAGCTGTTTGTGATAACACC 59 992680 992701 GGTACCAGAAGATATACTTGGG 59 NA Drosophila melanogaster 50 CG1090 FBgn0037238 FBtr0078912 2 1 2 110 3R 189422 189442 CTTATCCTCCACATACTGGTG 59 189514 189952 CGATAGCTTTAGCTCCTCG 59 NA Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113339,FBtr0113341,FBtr0113340,FBtr0078900,FBtr0113338 3 5 15 173 3R 110113 120854 TTAAGTGCCGTTAAAGGAGG 59 120990 121008 CTTATCGCGAATGTCTTGC 59 NA Drosophila melanogaster 50 CR33701 FBgn0053701 FBtr0091689 1 1 1 60 3L 9506839 9506858 AGTTTCGAACTCAACTTGTC 58 9506798 9506819 TGAAGAGATAAAGTCGGTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pncr009:3L FBgn0062928 FBtr0091951 1 1 1 85 3L 19480823 19480841 CAGAAGGTGGACTAAATGC 58 19480331 19480777 CATATTGGACTAATCTACCCAC 57 NA Drosophila melanogaster 50 Act79B FBgn0000045 FBtr0078478 3 1 1 81 3L 21979362 21979743 TACCATGTATCCAGGTATCG 58 21979784 21979805 GATGATCTTGATCTTGATGGTG 58 NA Drosophila melanogaster 50 Nopp140 FBgn0037137 FBtr0089579 2 1 2 163 3L 21827775 21827793 GTGACTCTGGTGAAGAGTC 59 21827919 21828179 GTCATTCTTCTGTTGCTCTC 58 NA DesignRelaxed Drosophila melanogaster 50 CycH FBgn0022936 FBtr0078439 3 1 1 107 3L 21816055 21816073 GTGAAGCAATATCAGCAGC 59 21816140 21816220 CTCCTTATAGAGTTCGCTATCAG 59 NA Drosophila melanogaster 50 CG32445 FBgn0052445 FBtr0078425 3 1 1 94 3L 21632800 21632818 ATACTTCTTTGGAGCCACC 59 21632876 21632894 AGTTTCGACTCACACTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11307 FBgn0037106 FBtr0078420,FBtr0078421 1 2 2 167 3L 21612250 21612329 AATTTCAGAAACAGCCGAC 58 21612460 21612478 CTTAAGGACGACTTGACGT 59 NA Drosophila melanogaster 50 Mkrn1 FBgn0029152 FBtr0078383,FBtr0078384 2 2 2 69 3L 21524869 21524890 CAGAGCCAGAATGAAATAATCG 59 21524637 21524656 GATAATCTCGCCGATCTACG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32440 FBgn0052440 FBtr0078345 3 1 1 151 3L 21353509 21353527 AATAATGAACTGCCCACCA 59 21354060 21354078 ATATCAAACACGCTCTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32436 FBgn0052436 FBtr0078343 2 1 1 84 3L 21343555 21343661 CGTTTGCAGTACTATTATCGG 58 21343707 21343725 AGAAATCGGGATTCAAACG 58 NA Drosophila melanogaster 50 Cpr78Cb FBgn0037068 FBtr0078337 1 1 1 67 3L 21288921 21288939 CCTTCAAGACCAGTAATGG 57 21288970 21288988 ATAGATGCCAATGGTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AcCoAS FBgn0012034 FBtr0078413,FBtr0100592,FBtr0078414 1 3 3 83 3L 21265831 21265849 TCTAAAGCACAACCTGAGC 59 21265711 21265729 TTGTAATACCAGAGCCAGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG9391 FBgn0037063 FBtr0078416,FBtr0078417 2 2 2 125 3L 21260335 21260354 TTACCAGTGAATTCGGTACC 59 21260168 21260186 TCGACATATTGAGAGCTGC 59 NA DesignNoJunction Drosophila melanogaster 50 fbl FBgn0011205 FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188 2 4 5 149 3L 20381809 20381827 CAAGCTGGTCTACTTCGAG 59 20381939 20383026 ACATTGTCCATCTGTAGGTG 59 NA Drosophila melanogaster 50 hale FBgn0036924 FBtr0074912 3 1 1 83 3L 19978505 19978523 CTGTACCCAGTTCAATGGT 59 19978440 19978458 TATGGATTGGCACTAGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Su(z)12 FBgn0020887 FBtr0074917,FBtr0074916 2 2 2 118 3L 19914078 19914161 GTCACAACAGACTCTACCA 58 19913978 19913996 CATCTGGATGGTCTTCTGG 59 NA Drosophila melanogaster 50 CG14100 FBgn0036889 FBtr0074971 1 1 1 60 3L 19582581 19582599 ACCAGACCATTGACTATGC 59 19582539 19582560 CCAATAATGAGCAAGTTATGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075008 1 1 11 84 3L 19297287 19297305 TAACCCTGACTGTTCTCGA 59 19297155 19297173 GTGATCTTGCTATTGTGCA 58 NA DesignNoJunction Drosophila melanogaster 50 Eip75B FBgn0000568 FBtr0075151,FBtr0075148,FBtr0075150,FBtr0075149 1 4 4 110 3L 17948398 17948416 AGATGGATATCGTTGGCTC 58 17948141 17948324 TGAGTATTCCGATCTGCTG 58 NA Drosophila melanogaster 50 CG32169 FBgn0052169 FBtr0113428,FBtr0075285 2 2 3 81 3L 17061139 17061157 TGATCTAACCAATGGGCAG 59 17060462 17061097 CTGATAGTTGTTCATCACTGAC 58 NA Drosophila melanogaster 50 CG14059 FBgn0036690 FBtr0075289 2 1 1 157 3L 17023349 17023367 AAGCATCACTACATCAGCC 59 17023210 17023228 GAGTGATCCCTCTTGAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11915 FBgn0036673 FBtr0075259 2 1 1 176 3L 16895146 16895164 AACAACTTTCCAAGGAGCA 59 16899995 16900013 CTAAATTCGTGTACAGCGT 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG13040 FBgn0036608 FBtr0075431 1 1 1 87 3L 16318317 16318335 CAGAAGACCATCATCACCC 59 16318248 16318266 AATGATGGTAGACATGGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pHCl FBgn0036542 FBtr0100037,FBtr0100036 2 2 4 85 3L 15853122 15857081 TAGATCGATGATAGGCGTG 58 15853055 15853073 GATTAGAAACAACCGGCAG 58 NA Drosophila melanogaster 50 CG13460 FBgn0036471 FBtr0114510 3 1 1 60 3L 15054440 15054459 ATCCTATGGATCCTATGGCT 59 15054399 15054419 GTTATTATTCCAGTAGCTGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nuf FBgn0013718 FBtr0100039,FBtr0100040 2 2 6 139 3L 14193538 14193847 CACCTCAAGATGATGACGA 59 14206189 14206210 GCTCGATGATCTATAGAGTTGG 59 NA Drosophila melanogaster 50 CG13738 FBgn0036390 FBtr0075790 3 1 1 68 3L 13966341 13966360 GTTTACCAGGTGGTCTACTG 59 13966292 13966310 ATTTCTCACGGTGTTCGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 stv FBgn0086708 FBtr0075806,FBtr0075809,FBtr0075807 2 3 5 84 3L 13474163 13474181 GACATGGACAACATGTTCC 58 13474229 13474325 GGAAACCAAAGTGTGAGTC 58 NA Drosophila melanogaster 50 CG34428 FBgn0085457 FBtr0112729 2 1 1 87 3L 13055549 13055624 CATATTACTCACACCCTCCTC 59 13055673 13055691 GGATTGTCCCATCTTCTCC 59 NA Drosophila melanogaster 50 NijA FBgn0036101 FBtr0089569,FBtr0089570,FBtr0089571 1 3 3 148 3L 10687816 10688131 TATTCCAGATTGCTGTGGG 59 10687686 10687707 GGCTGATATTAGAACATTGACC 58 NA Drosophila melanogaster 50 simj FBgn0010762 FBtr0076262,FBtr0076263 1 2 3 120 3L 10681692 10681791 TTAGAGCTTTGGGACAAGG 59 10681875 10682038 TTATTGTTGAAGGCTGCCA 59 NA Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076331,FBtr0076333,FBtr0076335 1 3 8 246 3L 9817658 9817676 CGATCAAATAACGAAGCCC 58 9823879 9824111 ATAAATGGGACCCTGAGGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG8177 FBgn0036043 FBtr0076327,FBtr0076317,FBtr0076324,FBtr0076318,FBtr0076321,FBtr0076320,FBtr0076319,FBtr0076322,FBtr0076323,FBtr0076325,FBtr0076326 2 11 11 88 3L 9773790 9773876 CTCATGAGATCTTTGTGCA 57 9773928 9773946 CTCATACTTGATCCAACGG 57 NA Drosophila melanogaster 50 CG6767 FBgn0036030 FBtr0076416 1 1 2 130 3L 9679555 9681640 GAAATTTAGGAGTCGTGCG 58 9678124 9678145 CAACTGGTATATCAAAGAAGCC 59 NA Drosophila melanogaster 50 CG3408 FBgn0036008 FBtr0076426 1 1 1 109 3L 9501402 9501420 GGTACTTAGACCTGAAGGG 58 9501225 9501330 GATGCTGACTGTATTCTTGG 58 NA Drosophila melanogaster 50 Rdl FBgn0004244 FBtr0076534 3 1 3 103 3L 9148400 9151048 TACCACAGGCAACTATTCG 59 9148315 9148335 TAATAACGATCAGTCCAGAGG 58 NA Drosophila melanogaster 50 bol FBgn0011206 FBtr0076541,FBtr0076539,FBtr0076540,FBtr0076538 2 4 4 130 3L 9101077 9101096 TATACCCATGGATCAGTTCG 58 9100463 9100724 TGGTGGGTACATTCATTGG 59 NA Drosophila melanogaster 50 GNBP3 FBgn0040321 FBtr0076510 2 1 1 60 3L 8949197 8949216 CCAGGTACTGGAAATAACTC 57 8949239 8949257 ATTCGAGGGTGTAATTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6416 FBgn0035917 FBtr0089568,FBtr0089565 1 2 8 177 3L 8627795 8627813 GACACGACTACCATGACAG 59 8628172 8631265 TACTGGTTTGGAACTGTGG 59 NA Drosophila melanogaster 50 Idh FBgn0001248 FBtr0114548,FBtr0076673,FBtr0114549 1 3 9 285 3L 8351772 8351790 TAATACCCACATCCACACC 58 8350855 8350873 TATCGCGGTTCTCAATACC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 eIF4E-3 FBgn0035860 FBtr0076701 3 1 1 113 3L 8223294 8223371 AATAAGCTATCCCTTTGGACG 59 8223446 8223464 CACCTGGTACTGGATTTCC 59 NA Drosophila melanogaster 50 CG7498 FBgn0040833 FBtr0076731 3 1 1 81 3L 8148485 8148504 CATTAACGCGATCAAATGCA 59 8148423 8148441 TATCGAGCTGATGATGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112696,FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112697,FBtr0112702,FBtr0112698 1 8 10 91 3L 7703513 7703531 ATACTCGTGGAAAGGTCAG 58 7703375 7703459 ATGGTCATTATCGAGAAGCA 58 NA Drosophila melanogaster 50 CG7716 FBgn0035800 FBtr0076824 1 1 1 60 3L 7582629 7582648 TAAGGATAATGTTCGCTGTC 57 7582588 7582606 TTGCCTACCCAATAGTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8560 FBgn0035781 FBtr0076868 3 1 1 128 3L 7395851 7395869 CTCCTATGGCAACTACCTG 59 7395674 7395692 GTATACTTCGTTCCGGTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32412 FBgn0052412 FBtr0077080 3 1 1 95 3L 5894960 5894978 GTGCCATTCTGTTGAACAC 59 5894648 5894904 CGAAGAATATGAGCATAAGTCC 58 NA Drosophila melanogaster 50 sif FBgn0085447 FBtr0112712,FBtr0112708 3 2 8 90 3L 5670040 5697034 TCATCAGAGATTTCGGACG 59 5697088 5697106 TATATGGTGACGCCATGAC 59 NA Drosophila melanogaster 50 Con FBgn0005775 FBtr0073375 2 1 1 80 3L 4952942 4952960 CTGACGTTCTACACATTCC 57 4940096 4952898 GAATTTGTTGTCTGACACG 57 NA Drosophila melanogaster 50 dyl FBgn0066365 FBtr0073341,FBtr0073343,FBtr0073342 1 3 3 300 3L 4298549 4298567 TAATGGCCATAGTCCTGTG 58 4296029 4296047 ATCATGCCGTAGAAAGGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG1135 FBgn0035489 FBtr0073202 2 1 1 291 3L 4041686 4041763 TTAAGAGCTCGGAACAACC 59 4042017 4042036 ATATTACGTTTGTTGCGACG 59 NA DesignRelaxed Drosophila melanogaster 50 ida FBgn0041147 FBtr0073160,FBtr0073161 1 2 2 60 3L 3906264 3906282 GGAGATCATACACGACCTC 58 3906305 3906324 TTGATTCATATAGCCCAGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eip63E FBgn0005640 FBtr0073132 1 1 11 95 3L 3516815 3552791 AAATGCTAAAGATGGCGTC 58 3552850 3578292 ATTGTTAATCTGCCGAAGC 58 NA Drosophila melanogaster 50 CG14966 FBgn0035415 FBtr0073108 1 1 1 60 3L 3197236 3197254 ACTGGTCAAGTTTCTGTCG 59 3197194 3197212 CTTGTCCAAAGAAACGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 prominin-like FBgn0026189 FBtr0073120,FBtr0073119,FBtr0073118 3 3 3 90 3L 3118970 3119051 CCTGCTTCTAGCCATACTG 59 3118898 3118916 GTAGGTTACCATACCCAGC 59 NA Drosophila melanogaster 50 CG32487 FBgn0052487 FBtr0073007 3 1 1 60 3L 3016986 3017004 ATAACTCAGTGACTTCGGT 57 3016944 3016962 ACCAAGAAACCCATTTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9972 FBgn0035379 FBtr0073011 2 1 1 103 3L 2886762 2886780 AGTTATCAGACACCCTTCG 58 2886397 2886695 TACAGAAGATACGTGGGTG 58 NA Drosophila melanogaster 50 CG14949 FBgn0035358 FBtr0072949 3 1 1 77 3L 2642639 2642657 AACTCCTAGAAACCCTTCC 58 2642580 2642598 TGCTCAGTTGATAGAAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1244 FBgn0035357 FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933 2 6 6 90 3L 2640506 2640585 TCTGTGGAAGGATGTACCA 59 2640639 2640657 CACTTGTAGGACAGGTGAG 59 NA Drosophila melanogaster 50 CG33232 FBgn0035347 FBtr0072918,FBtr0100539,FBtr0072919,FBtr0072920 2 4 4 87 3L 2495884 2495902 ACATTAGCTCCGAGTACAC 58 2495951 2496030 GCATTATGACCATATGACTCC 58 NA Drosophila melanogaster 50 ecd FBgn0000543 FBtr0072903 1 1 1 60 3L 2265110 2265130 GCAACGTATACGAATGAATCC 59 2265070 2265088 AATGCACGACTGTATCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 drpr FBgn0027594 FBtr0072799 3 1 2 154 3L 1723770 1723789 TATTGTGAGGGACTGTTGTG 59 1720161 1723590 GTGGGCAATTTATATCGCAG 59 NA Drosophila melanogaster 50 CG7971 FBgn0035253 FBtr0100219 2 1 5 102 3L 1656993 1657012 CTCTATTTCCTCTGAGCTGC 59 1655009 1656928 TTCCTGAGTCAGTTTGGAC 59 NA Drosophila melanogaster 50 n-syb FBgn0013342 FBtr0072819 3 1 5 168 3L 1636902 1636921 TGCATAGAGTACCTTCATCC 58 1635945 1635964 GTTCTTGTCTTTCTTTCCCA 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 GC FBgn0035245 FBtr0072821 1 1 1 187 3L 1624587 1624680 GTTTGTAATAGGCATGTTTCCC 59 1624421 1624439 CACAGTAGGCAAGGATGAG 59 NA Drosophila melanogaster 50 Cct1 FBgn0041342 FBtr0072741,FBtr0072739,FBtr0072738,FBtr0072740 3 4 4 133 3L 1551681 1551701 CAACGTGTACTTAATTGTGGG 59 1551796 1551877 CATTCTGGACGATCTCGTC 59 NA Drosophila melanogaster 50 Trh FBgn0035187 FBtr0072638 1 1 1 92 3L 1191110 1191187 CAAGGAGCAAATGAGAGCT 59 1191036 1191054 TTCGACAGGACTTCAACAC 59 NA Drosophila melanogaster 50 CkIIalpha-i3 FBgn0025676 FBtr0072604,FBtr0072603 3 2 2 81 3L 709486 709566 TGTAAGCTTGCAACAAAGC 59 709423 709441 TGGACGATTCTTAGTCAGC 59 NA Drosophila melanogaster 50 CG13875 FBgn0035104 FBtr0072476 3 1 1 80 3L 181024 181043 ATTTGGATAGTAGTGCCAGG 59 181084 181163 GAAGATGTAGCTGGTATTCCT 58 NA Drosophila melanogaster 50 CR12953 FBgn0033997 FBtr0087364 3 1 1 60 2R 11093524 11093544 CAAGCCAATCTTCAGATTCTC 59 11093564 11093584 CATGGGATAGCCTATAATCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33364 FBgn0053364 FBtr0086356 1 1 1 62 2R 15649668 15649686 AATACATCGGTTCTCGTCC 59 15649624 15649642 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 egg FBgn0086908 FBtr0112777 3 1 1 81 2R 20665803 20665875 GACTATGTGCATGAAGTTCC 58 20665741 20665762 TCTTAACAGCGTAGTATGTCTC 59 NA Drosophila melanogaster 50 Start1 FBgn0035028 FBtr0089867 1 1 2 131 2R 20464512 20464531 GCGAATAACATGACGAAACC 59 20464625 20464688 AAGAGTCAACCGACTTGTG 59 NA Drosophila melanogaster 50 Ssl FBgn0015300 FBtr0072352,FBtr0072351 2 2 2 170 2R 20387261 20387280 AAGATCTATTGCCCTAGCTG 58 20387050 20387128 CTGGAAGCCATAGATACGG 59 NA Drosophila melanogaster 50 CG13590 FBgn0035012 FBtr0072353 1 1 1 132 2R 20381070 20381088 ATCTGGTACATGATCCGGA 59 20380904 20380924 CGACCATTAGTAGATAGTCCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG11293 FBgn0034889 FBtr0072081 1 1 1 78 2R 19574651 19574669 CTACTCGGATCAGAGTGTC 58 19574780 19574798 CTGGAACTCCTCCTTACAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17664 FBgn0034883 FBtr0072107,FBtr0072108 2 2 2 65 2R 19491491 19491510 GATGACCACTGGATCTACTG 59 19491445 19491463 CTTGTAGATCACCGAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13557 FBgn0034867 FBtr0072019 3 1 1 90 2R 19363882 19363901 TATTTCTTCTGGGTCTTGCA 58 19363811 19363829 TAGTACTGTTTGTGCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3788 FBgn0034800 FBtr0071995 1 1 1 80 2R 18820695 18820713 CCTGACATACTCTACCACC 58 18820562 18820652 GCATACAAACCTCACATCAC 59 NA Drosophila melanogaster 50 CG9825 FBgn0034783 FBtr0071893 2 1 1 85 2R 18725371 18725446 CGAACTTTCCGGAATACGA 59 18725494 18725513 GAATTGCGTTAGGATGTAGC 59 NA Drosophila melanogaster 50 stl FBgn0086408 FBtr0113110,FBtr0071885 3 2 2 147 2R 18701222 18701298 AGGATTTCCTAATGGATCCC 58 18701408 18701426 ATGAAGTTCTTCCCAAAGC 57 NA Drosophila melanogaster 50 Oatp58Dc FBgn0034716 FBtr0113105,FBtr0071777 2 2 2 81 2R 18113473 18113491 TCGCTATACTACACGTTGG 58 18112904 18113429 ATGAAAGACTCAACAAAGCC 58 NA Drosophila melanogaster 50 CG13492 FBgn0034662 FBtr0071741 3 1 2 150 2R 17709902 17709986 AATCGTGAGATCTTCCCTG 58 17709770 17709788 TAACATTTCCGGAAAGCAG 58 NA Drosophila melanogaster 50 CG15676 FBgn0034651 FBtr0071668 2 1 1 60 2R 17559509 17559527 TCCTGACAAGGAAGTTCAC 59 17559550 17559569 GCTCACCCATCTGAATACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089710,FBtr0089703 2 2 9 130 2R 17399440 17399460 CCGTCTAGATCCTACAAACTC 59 17399676 17399909 GGAAGTACTTGACGTAGCC 59 NA Drosophila melanogaster 50 dom FBgn0020306 FBtr0071604,FBtr0071602,FBtr0071603 1 3 3 80 2R 17218963 17218982 GACGGAATTACATTCCACAC 58 17219022 17219272 CGTCTCTAGATTTATTTGCGTG 59 NA Drosophila melanogaster 50 CG4279 FBgn0034600 FBtr0071628 3 1 1 173 2R 17057740 17057820 CTACTGGGCGAAATAGACC 59 17057585 17057606 GTTGATTATGTTGGCATCTACG 59 NA Drosophila melanogaster 50 rig FBgn0050149 FBtr0086252 1 1 1 81 2R 16522392 16522469 AACCGAGTTGACCAATCTG 59 16522329 16522347 GCGTAATTTGAACGTGGAC 59 NA Drosophila melanogaster 50 CG30148 FBgn0050148 FBtr0086266 2 1 1 60 2R 16434931 16434949 AAGCTAAACGAGGAGTTCG 59 16434889 16434908 CTTTCGGAATATCCCTGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10444 FBgn0034494 FBtr0086305 1 1 1 60 2R 16161479 16161497 GTGATCAACATTGCCTACG 58 16161437 16161457 AAACAGGAAGGAAGAAGTACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11208 FBgn0034488 FBtr0086322 3 1 1 98 2R 16130608 16130689 TCTTACCCAAATCACACCA 58 16130528 16130546 ATCTCTGTGCAGAAGTAGC 59 NA Drosophila melanogaster 50 hrg FBgn0015949 FBtr0111010,FBtr0086484,FBtr0086483 1 3 3 86 2R 15554704 15554780 GATTTCAAGTCTGGGATCC 57 15554636 15554654 AATTCTGTTGTGGGTATGC 57 NA Drosophila melanogaster 50 par-1 FBgn0026193 FBtr0086453,FBtr0086458,FBtr0100391,FBtr0086450,FBtr0086455,FBtr0086452,FBtr0100390,FBtr0086459,FBtr0086460,FBtr0100392,FBtr0086457 3 11 15 113 2R 15365201 15366256 TTCACTCTGGTCAAACCAG 59 15366332 15366351 AGAGTTTGGAGAAGAAGCTC 59 NA Drosophila melanogaster 50 Spt5 FBgn0040273 FBtr0086531 1 1 2 176 2R 15327473 15327492 GAAACTGGCCTCATTATTCG 58 15327631 15327708 ATTCTGGGAATCCAGTTGC 59 NA Drosophila melanogaster 50 wbl FBgn0004003 FBtr0086510 2 1 1 70 2R 15137581 15137599 GGACTATGGAGAACTGGAG 58 15137837 15137855 TACTCGGGAAGTTCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp12b2 FBgn0034387 FBtr0086609 2 1 1 84 2R 14643157 14643176 AGAGCTTGAACTACTATCGC 59 14643223 14643299 CATTCCTGACCCTGATCAG 59 NA Drosophila melanogaster 50 CG15087 FBgn0034380 FBtr0086647 3 1 1 81 2R 14596612 14596682 ACATACTGATTGCTCTGGT 58 14596549 14596567 CATATCTCAGTTTCGTGGG 57 NA Drosophila melanogaster 50 CG10934 FBgn0034263 FBtr0086859 3 1 1 61 2R 13610346 13610364 ATAATGGTCACTCATGCCC 59 13610388 13610407 TCATAGTATCTGTACGTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 POSH FBgn0040294 FBtr0086828 3 1 1 175 2R 13458660 13458745 AGTACATGTAAGATCCGGC 58 13458884 13458902 GTTCCTTGCTTCCTTTCAC 58 NA Drosophila melanogaster 50 l(2)k01209 FBgn0022029 FBtr0086914,FBtr0086912,FBtr0086913,FBtr0086915 2 4 4 95 2R 13311459 13311541 TTCGTCATAGGAATCTGCG 59 13311600 13311618 CAACAGTGTTACCCATGGA 59 NA Drosophila melanogaster 50 CG15605 FBgn0034196 FBtr0087002 1 1 1 60 2R 13014416 13014434 GTAAAGAGGGACAAGGCAG 59 13014374 13014393 AATCCCTAAAGTATCGAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15611 FBgn0034194 FBtr0086982,FBtr0086981 2 2 2 87 2R 13000831 13000850 CTTCTATTGCTATGTGAGCT 57 13000900 13000981 TTGATATGTCTGCAACCAC 57 NA Drosophila melanogaster 50 CG6665 FBgn0034172 FBtr0087054,FBtr0087053 2 2 2 62 2R 12845152 12845170 CAACATGGAACAGCTTTCG 59 12845196 12845214 CAAGTAAGTACTCCTCCGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vkor FBgn0053544 FBtr0091510 1 1 1 60 2R 12666171 12666189 ATCCTGTACTTCTTGAGCT 57 12666268 12666286 CTATCAATTGGACCAGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 Acp53Ea FBgn0015584 FBtr0087080 3 1 1 60 2R 12637414 12637433 ACTCAAGGAATCAGTGAGAC 59 12637373 12637391 GCATTTGTTGGTCTCAAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sema-2a FBgn0011260 FBtr0087089,FBtr0087090,FBtr0087091,FBtr0087088 1 4 4 90 2R 12416665 12416686 CTGATCTGTATAATACTTCGGC 58 12416737 12416873 AAGTTTGGTTTGTCCAACC 58 NA Drosophila melanogaster 50 Menl-2 FBgn0029153 FBtr0100603 3 1 3 130 2R 12302914 12302932 GAACTACTTGACGAAGGCA 59 12302802 12302820 GACGCAGTTTGTATTACCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha44 FBgn0020611 FBtr0087175,FBtr0087173,FBtr0087176,FBtr0087174 2 4 4 84 2R 12214367 12214385 ATTTGGTCAAGAAGGAGCA 59 12214239 12214319 TCATTAGCCATGACCTTGG 59 NA Drosophila melanogaster 50 CG15705 FBgn0034104 FBtr0087137 1 1 1 60 2R 12168647 12168667 GATTACATGAAGTATCCCAGC 58 12168689 12168707 ATGGTTTAACGCCTTTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12970 FBgn0034047 FBtr0087289 3 1 2 116 2R 11743968 11743989 TAAGCTCAAGGTATCAATTCCC 59 11744066 11744144 TCCAGAATGACATTGCCTG 59 NA Drosophila melanogaster 50 CG30472 FBgn0050472 FBtr0087360 3 1 1 97 2R 11310941 11311016 TCCATCATTGACTCTGGAG 58 11310862 11310881 TTTCGGTGTATGAGTTACAC 57 NA Drosophila melanogaster 50 CG34123 FBgn0083959 FBtr0114580,FBtr0114579,FBtr0110833,FBtr0113485 2 4 6 80 2R 11152374 11152394 ACGACTATATGATTCTGGAGG 58 11152253 11152333 ATACACCAATCTCGAATCCC 59 NA Drosophila melanogaster 50 tra2 FBgn0003742 FBtr0089617,FBtr0089620,FBtr0089615,FBtr0089619,FBtr0089616,FBtr0089621 1 6 7 140 2R 10490376 10490678 GATTGACGCACAAACACAG 59 10490254 10490274 TGGGTTATAGAGAAATCGACG 59 NA Drosophila melanogaster 50 cnn FBgn0013765 FBtr0087705 1 1 5 156 2R 9331805 9331826 GTTGAATTAGAAGCCTGTAGGA 59 9331602 9331688 TGATTGTGGCTTCCAAGAG 59 NA Drosophila melanogaster 50 bic FBgn0000181 FBtr0087783,FBtr0087782 2 2 2 142 2R 8757979 8757997 GAAGAAGATCGTCCACTCC 59 8758102 8758121 GATTGTTGAAGTGGATGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL18 FBgn0026741 FBtr0087852 3 1 1 78 2R 8644139 8644157 TGAATACGTGATCAACCGG 59 8644199 8644217 CTCCAGATGATAGCCTACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18343 FBgn0033683 FBtr0087982 2 1 1 72 2R 8026465 8026483 TCCATGTACTCTGTTCTGG 58 8026519 8026537 AAAGTATTGCGTAGCACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nompA FBgn0016047 FBtr0089382,FBtr0089381,FBtr0089379,FBtr0089380 3 4 4 81 2R 7202468 7202541 GGGCAATGAATATGATCGT 57 7202405 7202423 ATATCGGGATCCATAACGA 57 NA Drosophila melanogaster 50 skf FBgn0050021 FBtr0114569,FBtr0114570,FBtr0088196 1 3 3 95 2R 7117505 7117524 ATAAGCAAGGACAGTGACTC 59 7117366 7117447 ATCAGCTTGGAAAGAGCAG 59 NA Nonspecific, InUTR Drosophila melanogaster 50 shn FBgn0003396 FBtr0088099,FBtr0088100,FBtr0088101,FBtr0088098 2 4 4 102 2R 7098298 7098383 TGGCAAGCAAGTAAATGTG 58 7098446 7098467 CTTCTTCTGCAACAATATCTCC 59 NA Drosophila melanogaster 50 Cyp12d1-p FBgn0050489 FBtr0089419 2 1 1 87 2R 7008750 7008768 ATCTTTATGCAACCCAGGG 59 7008617 7008699 GGATTTCCTTAATGCGCTC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG12938 FBgn0033554 FBtr0088248 2 1 1 60 2R 6708896 6708916 CCTTTGATCACTTTATGGTGC 59 6708856 6708874 AAGTACGAAGGTATGTGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7220 FBgn0033544 FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217 3 5 5 110 2R 6624695 6624713 CCATGTTGAGTAGTTGTCG 58 6624787 6624870 CAGAATCATCGTGGTACCA 59 NA Drosophila melanogaster 50 CG7220 FBgn0033544 FBtr0088218,FBtr0113064,FBtr0088219,FBtr0088216,FBtr0088217 2 5 5 110 2R 6624696 6624714 CATGTTGAGTAGTTGTCGC 58 6624788 6624871 ACAGAATCATCGTGGTACC 59 NA Drosophila melanogaster 50 Rab3 FBgn0005586 FBtr0088257 1 1 1 70 2R 6612331 6612349 GTATTTCGGCACGATAAGC 59 6611841 6611859 ATAGTTCTGTACCGCTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG12895 FBgn0033523 FBtr0088314 3 1 1 215 2R 6324653 6324671 TTGTGGACTACGATGATCC 58 6324394 6324412 TGACACCATTGATCAACTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG12130 FBgn0033466 FBtr0088385 2 1 1 148 2R 5848194 5848273 CCAAGCTAAACAACACTTACG 59 5848383 5848401 ATCAAATGTGGTCTGTCCC 59 NA Drosophila melanogaster 50 CG1516 FBgn0027580 FBtr0088457,FBtr0088460,FBtr0088459,FBtr0088454,FBtr0088458,FBtr0088455,FBtr0088456,FBtr0088462,FBtr0088461 2 9 9 91 2R 5738884 5738970 GAAGCCGTTAAGGAGATCC 59 5738811 5738829 ATATCGATGACAGTTCCGG 58 NA Drosophila melanogaster 50 brp FBgn0086376 FBtr0111001,FBtr0113488 2 2 2 238 2R 5424009 5424027 TGGAGAAGTCCCTACAGAC 59 5424438 5424530 GATCTTTAAGGCTTGTTGCA 58 NA DesignRelaxed Drosophila melanogaster 50 TXBP181-like FBgn0026326 FBtr0088599 1 1 1 141 2R 5176980 5176998 AATTAGAGTCCGCCAATGG 59 5176796 5176876 CTCGATATGCGATAGTTGCT 59 NA Drosophila melanogaster 50 CG8046 FBgn0033388 FBtr0088621,FBtr0088620 3 2 2 81 2R 5051520 5051597 GATCTTACAGGATGATTGCCT 59 5051459 5051478 TCGTATGCATAACCAGAACC 59 NA Drosophila melanogaster 50 CG8237 FBgn0033350 FBtr0088653 3 1 1 60 2R 4813613 4813631 GCTACGAGTACGTTCTGTC 59 4813655 4813673 AACATATCGATGGTCTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30354 FBgn0050354 FBtr0088702 3 1 1 60 2R 4565031 4565049 GGAATTGTTCGACTTCGTC 58 4565072 4565091 TTTCGAGAAGAGACTGTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)44DEa FBgn0010609 FBtr0088701,FBtr0088699,FBtr0088700,FBtr0100430,FBtr0100429,FBtr0100431,FBtr0100428,FBtr0100427,FBtr0100426 2 9 9 94 2R 4568146 4568164 AGATCAAGACCTGCTTGTG 59 4568222 4568303 GGTCATATCACGGTAGTCC 58 NA Drosophila melanogaster 50 LvpH FBgn0002570 FBtr0088759 3 1 1 69 2R 4337534 4337552 CAACATTCAGGCAATCGAC 59 4337421 4337439 TACATAGAGATCGCTTCCG 58 NA DesignNoJunction Drosophila melanogaster 50 sut1 FBgn0028563 FBtr0088777 2 1 1 166 2R 3972207 3972225 TTTGGTGTAATCAGACCCT 58 3972355 3972567 AAGAAAGCATGCTTTCCTG 58 NA Drosophila melanogaster 50 slv FBgn0025469 FBtr0088824 1 1 1 124 2R 3969001 3969377 GGATTCTTATCGTGCAGCT 59 3968895 3968916 GTAAACACATAGTAGATCAGCG 58 NA DesignRelaxed Drosophila melanogaster 50 Dgk FBgn0085390 FBtr0112581,FBtr0112579,FBtr0112580 3 3 4 164 2R 3732585 3732603 GAAGTTCCAGTACATGCTC 57 3732249 3732396 AACTCTATGGAGTCCATGG 58 NA Drosophila melanogaster 50 CG12822 FBgn0033229 FBtr0088842 3 1 2 104 2R 3720673 3720745 TTGACTCAGGAAGAACCTC 58 3720813 3720831 CTCCATACAGTTCCAGGTC 59 NA Nonspecific Drosophila melanogaster 50 Corin FBgn0033192 FBtr0088909,FBtr0088908 1 2 2 80 2R 3446452 3446472 ACAGATTCCCTACAACTACAC 59 3446514 3446589 GAATCCAAGTCCGTTTGAG 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111092,FBtr0111093,FBtr0089020,FBtr0111096,FBtr0111095,FBtr0111091,FBtr0111094 3 7 60 84 2R 3249360 3253455 CGAATACGATGGAAAGTACCT 59 3249296 3249314 GTAGCTCTTGTATCCGTCC 59 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0111070,FBtr0111098,FBtr0111062 1 3 60 84 2R 3238142 3238160 TTCCTATACACGGTCTGTG 58 3236471 3238096 CTTGTACCATCTCATAATGGG 57 NA Drosophila melanogaster 50 CG33914 FBgn0053914 FBtr0091918 3 1 1 144 2R 2924977 2924995 GTATCGTGGAGTACTGTGC 59 2924769 2924787 TTCATCGTATGGAGGAAGG 58 NA DesignNoJunction Drosophila melanogaster 50 Tsp42Ea FBgn0029508 FBtr0086172,FBtr0086171,FBtr0086173 1 3 3 101 2R 2884280 2884299 GTAACGATGATCATCCTGGG 59 2884363 2884444 GATCGAGTACGTCATGGAC 59 NA Drosophila melanogaster 50 vimar FBgn0022960 FBtr0086183,FBtr0086182 2 2 2 158 2R 2865096 2865204 TACTGGTGATGACTCAATGC 59 2864957 2864975 TGCTCCACAAAGTAGATGC 59 NA Drosophila melanogaster 50 CG14471 FBgn0033049 FBtr0085970 3 1 1 60 2R 1888231 1888249 AGCTATAGTCGCAACTCTG 58 1888272 1888291 GTTTAGTCTCCTCCTTTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17715 FBgn0041004 FBtr0111245 2 1 6 175 2L 22737571 22741711 TATACGAGAGTCAACTGGC 58 22741970 22742039 AATGCTGTACAATTGACCTG 58 NA Drosophila melanogaster 50 CG6448 FBgn0032976 FBtr0113046 2 1 5 108 2L 22155221 22155241 TCTCATCTGAATTCCACTCAG 59 22155311 22158162 AGTTACTTTCACTGGCCAC 59 NA Drosophila melanogaster 50 dia FBgn0011202 FBtr0081411,FBtr0081410 3 2 2 112 2L 20765427 20765445 GATTGAACAGTTTGCAGCC 59 20765578 20765596 TGTCGGGTTTGATATCCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9319 FBgn0032881 FBtr0081460 2 1 1 60 2L 20751060 20751078 TAGATCTTAAGCCCGACGA 59 20751018 20751036 TCTGGAAGGGAAAGTACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ik2 FBgn0086657 FBtr0081389 2 1 2 81 2L 20677473 20677575 CTCCACGAACGATAGATCAG 59 20677619 20677637 GGGAGATCTAATTGCTGGG 59 NA Drosophila melanogaster 50 CG34007 FBgn0054007 FBtr0100062 2 1 1 69 2L 20495378 20495396 CTTATGTTGCCTGCTTCAC 59 20495429 20495447 TATTCCTGGTTCAGTTCGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 neb FBgn0004374 FBtr0081332 3 1 1 60 2L 20089085 20089104 TCAATGAGACACTGAGTGAC 59 20089127 20089145 ATGGCACTCAGATTAAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hs2st FBgn0024230 FBtr0081288 1 1 1 108 2L 19443926 19443944 AATTTAGTCCGCAAGAAGG 57 19443776 19443794 AGAAGAAGGGTATCTGCAG 58 NA DesignNoJunction Drosophila melanogaster 50 RanGap FBgn0003346 FBtr0081234 1 1 1 149 2L 19446844 19446918 ATTGTCAACCAATTCACCG 58 19447029 19447049 CTTTGTCTTGATGGCATAGTC 59 NA Drosophila melanogaster 50 CG10602 FBgn0032721 FBtr0089314,FBtr0089315,FBtr0089317,FBtr0089316 1 4 4 104 2L 18856840 18856925 CTAAGGGAAGCCTTAACGT 58 18856754 18856772 TATAAGGATGCTCCTTGCC 58 NA Drosophila melanogaster 50 CG5681 FBgn0032658 FBtr0081024 1 1 1 60 2L 17987006 17987026 CTCAAATCGCAATAGGAACTG 59 17987047 17987066 CGTGCCTTTACCATATTACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31784 FBgn0051784 FBtr0080974,FBtr0080973 1 2 2 81 2L 17105833 17105851 ACCTCTCATTCTCACTCTC 57 17102625 17105789 GTATTGGAACACGAATTGTC 57 NA Drosophila melanogaster 50 mdy FBgn0004797 FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917 2 4 4 87 2L 16820785 16820804 CATAACGCCCTAATCCTGAG 59 16820919 16825419 CAATTATTTCCATGGCTAGACC 59 NA Drosophila melanogaster 50 Mhc FBgn0086783 FBtr0080904 1 1 13 126 2L 16770956 16770974 GGTGCTGATATTGAGACCT 58 16771130 16771950 GACAGTATTCTTTAACACCGG 58 NA Drosophila melanogaster 50 CycE FBgn0010382 FBtr0080773,FBtr0080776,FBtr0080774,FBtr0080777,FBtr0080775 1 5 5 96 2L 15729492 15729576 ACATTTAGTCGGGAGATGG 58 15729414 15729432 AGATCACTCGGAAGAATGG 58 NA Drosophila melanogaster 50 CG15255 FBgn0028950 FBtr0080785 1 1 1 60 2L 15611495 15611513 GCAATGGCCTTATCAACAC 59 15611453 15611472 GATATCCTGTAGACCACCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15258 FBgn0032563 FBtr0080743 2 1 1 60 2L 15361548 15361566 AAGAAGTTCCCAGAGACAG 58 15361506 15361524 GAGTTGCGGGTTATTTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 yuri FBgn0045842 FBtr0100611,FBtr0080709,FBtr0100610,FBtr0100612 3 4 7 87 2L 15258838 15258857 ATGATCAATAGCTACTCCGA 57 15258698 15258791 GGGATAGATCACAATTCTTCTG 58 NA Drosophila melanogaster 50 CG7532 FBgn0028915 FBtr0080640 3 1 1 112 2L 14349269 14349287 AGACCGGATTCGTTTACTG 59 14349175 14349195 CGCTAAACAAAGACTTGTAGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 B4 FBgn0023407 FBtr0080513 3 1 2 263 2L 13547145 13549134 AAGACGAAGTGTTAATCGAC 57 13535017 13546919 TCCATGCAGCCTTTAAGAG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG6043 FBgn0032497 FBtr0089911,FBtr0089910,FBtr0114471,FBtr0113039,FBtr0113040 3 5 5 142 2L 13276278 13276382 GCAACAACGATATGATGCC 59 13276488 13276506 TTTCAGGTGTTGTCATTGC 58 NA Drosophila melanogaster 50 CG5867 FBgn0027586 FBtr0080449 1 1 1 89 2L 13238890 13238908 GACCAAACTGGAGACTGAG 59 13238961 13239041 AAGATGACATCGTTCAGCA 59 NA Drosophila melanogaster 50 pdm2 FBgn0004394 FBtr0080393 2 1 2 240 2L 12678862 12678880 TACACAAACACAGCAATCG 58 12684616 12684634 CTCAGAGTCTAGTTCCCTG 58 NA DesignNoJunction Drosophila melanogaster 50 salr FBgn0000287 FBtr0080235,FBtr0080236 2 2 2 120 2L 11372324 11372342 GAACTTCAGTTCGAGTTCC 58 11372425 11372533 CATATGGACCTTGAGATTCC 57 NA Drosophila melanogaster 50 RpL9 FBgn0015756 FBtr0080163,FBtr0080164 2 2 2 102 2L 11003232 11003523 AACATGATCAAGGGAGTCAC 59 11003149 11003167 CAATGACCGTGTTGTTCTC 59 NA Drosophila melanogaster 50 Nos FBgn0011676 FBtr0100487,FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100489,FBtr0100486 1 8 10 80 2L 10806031 10806051 GCTACAGAAGGATCAAATCCT 59 10805730 10805989 TCCTGCACATATGTCTTCG 59 NA Drosophila melanogaster 50 me31B FBgn0004419 FBtr0079976,FBtr0079975 3 2 2 89 2L 10240584 10240690 AAACAACTGATGTGACCGA 59 10240741 10240761 ATCCCTTCTCGAATATACCCA 59 NA Drosophila melanogaster 50 CG4908 FBgn0032195 FBtr0079950,FBtr0079949 2 2 2 60 2L 10223901 10223919 CTGCCTGCTAAACCTATCC 59 10223941 10223961 ATTCAGGAGATGATTGAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Try29F FBgn0015316 FBtr0079764 2 1 1 60 2L 8998746 8998764 CAGGTGGCTAACATAAAGG 57 8998788 8998806 AGAAGTGATAGCTACGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Peritrophin-15b FBgn0040958 FBtr0079714 3 1 1 73 2L 8394603 8394621 AGAACACTGGATTCGATCC 59 8394548 8394566 GGAACATGGAGGATACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13384 FBgn0032036 FBtr0079655 2 1 6 230 2L 8384884 8386223 AACCTTCAACAGATTCCCG 59 8386516 8386536 GTTATAGGACTTATCCGTCGA 58 NA DesignRelaxed Drosophila melanogaster 50 CG14275 FBgn0032022 FBtr0079602,FBtr0079603 3 2 2 83 2L 8329717 8329735 CCTACGTCTATGCCATGTG 59 8332324 8332343 CATGCGAATTACACTGATGG 59 NA DesignNoJunction Drosophila melanogaster 50 Mcr FBgn0020240 FBtr0079543 1 1 1 83 2L 8079818 8079836 AAGGGATTTGACAATCCCG 59 8079658 8079771 GTTTGATTGACGCGATAGC 59 NA Drosophila melanogaster 50 baf FBgn0031977 FBtr0079535 1 1 1 106 2L 8029827 8029845 TTTGGGACAGTATCTGGTG 58 8029915 8029933 GACAGTTGTAGCAATCGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ntl FBgn0031934 FBtr0079478,FBtr0079479 3 2 2 117 2L 7712414 7712487 GAGGAATTAAGTCGGTTGG 57 7712568 7712586 AACTTTATGCCTTTCCAGG 57 NA Drosophila melanogaster 50 Tsp FBgn0031850 FBtr0079313,FBtr0079311,FBtr0114488,FBtr0079312,FBtr0079314 1 5 6 95 2L 6701751 6701769 ATCACTCTCACTCGATCCA 59 6700488 6700562 CGACGAGGTCTAATGTGTC 59 NA Drosophila melanogaster 50 CG9486 FBgn0031791 FBtr0079243 1 1 1 60 2L 6256176 6256197 GACAAGATACACAAGTTTCTGG 59 6256216 6256236 CGTAGTGCTTGAAGATATTGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ade2 FBgn0000052 FBtr0079220,FBtr0079221,FBtr0079219 3 3 3 128 2L 6042150 6042168 GAGGAGGGTGTCAATAGTG 59 6041977 6041995 AATTAGTCCGCGGTATTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG11149 FBgn0031732 FBtr0079168,FBtr0079169 1 2 2 150 2L 5719427 5719525 AATGGTGGTATCACGTTGG 59 5719295 5719313 GTACACGTGAAAGGAGACC 59 NA Drosophila melanogaster 50 Msp-300 FBgn0053715 FBtr0091707,FBtr0091706,FBtr0091705 1 3 3 88 2L 5155462 5155480 TTTCTGTGAGAAGACCCTG 58 5155532 5155604 CATTGCGGAAATGAACCTC 59 NA Drosophila melanogaster 50 CG4230 FBgn0031683 FBtr0079019 3 1 1 276 2L 5097219 5097547 CAAGGATGATGGCTTTGAG 58 5097845 5097863 GATCTCCTCATCCGTAAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG34126 FBgn0083962 FBtr0110840 3 1 1 81 2L 4991070 4991153 CGGATAATTATAGGCACAAGAC 58 4991195 4991213 ATGCTTATATCGTCCTGGG 58 NA Drosophila melanogaster 50 hoe2 FBgn0031649 FBtr0077394,FBtr0114514 3 2 2 80 2L 4935313 4935332 CTTTGGATTTCTGACTGTGC 59 4935175 4935272 GGAAGTATATCCTGGAACACC 59 NA Drosophila melanogaster 50 ine FBgn0011603 FBtr0077448,FBtr0077446,FBtr0077449 2 3 4 142 2L 4473965 4474340 TAGTCTCAGGTTATCTTCCAG 58 4473843 4473861 GAAATGATAGGAACTGCCG 58 NA Drosophila melanogaster 50 CG15443 FBgn0031609 FBtr0077450 1 1 1 60 2L 4462153 4462174 TACTTCATGTACATAGTGCACC 59 4462114 4462132 GAGCATCTAACTTGTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL27A FBgn0010410 FBtr0077452 1 1 1 84 2L 4457497 4457748 GTTAAATTCGGCTACTACAAGC 59 4457434 4457454 TCTTAGAGAAGTACTTGGCCT 59 NA Drosophila melanogaster 50 l(2)k16918 FBgn0021800 FBtr0077497,FBtr0077498 1 2 2 94 2L 3807048 3807142 TGGAAACTAGTGTTGCTGG 59 3807200 3807218 CTGGTCGTACATGAGATGG 59 NA Drosophila melanogaster 50 CG2983 FBgn0031472 FBtr0077620 1 1 1 60 2L 2848362 2848380 GCATGTATCTCATCGAACC 58 2848403 2848422 ATGTTCGAATCATAGTGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9967 FBgn0031413 FBtr0077799,FBtr0100648 3 2 2 123 2L 2309692 2310134 TTTCCTCAACGATTACAGCA 59 2309588 2309606 CTCCGGAGGATTATCATCC 58 NA Drosophila melanogaster 50 l(2)gl FBgn0002121 FBtr0078166,FBtr0078171,FBtr0078170,FBtr0078167,FBtr0078168,FBtr0078169 2 6 6 90 2L 12208 12293 GACATTAATGGAGTTTCGTCAC 59 12139 12157 CTAAAGCAATACGCTGCAG 59 NA Drosophila melanogaster 50 CG14621 FBgn0031183 FBtr0077344 3 1 1 156 X 21847816 21847899 AAAGGTTCTCAAGGACACC 59 21848372 21848393 GGCAATAACTCGATAGTCTAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1702 FBgn0031117 FBtr0077310 3 1 1 83 X 20339661 20339679 TCATTATCTTCCGGCTGAG 58 20340068 20340086 TGAAGTCTTCGGTCAAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 Obp19b FBgn0031110 FBtr0077302 2 1 1 172 X 20288157 20288175 GATCAACATGATGTTCCCG 58 20288681 20288699 CTCATTCCTTGATCTCGGG 59 NA DesignNoJunction Drosophila melanogaster 50 sw FBgn0003654 FBtr0089400,FBtr0089398,FBtr0089405,FBtr0089406,FBtr0089399,FBtr0089407,FBtr0089403,FBtr0089409,FBtr0089402,FBtr0089408,FBtr0089401,FBtr0089397,FBtr0089404 2 13 13 101 X 20100288 20100306 ATATCCACGCACTACAACC 59 20100138 20100223 CTTTGTGTCCTTTAGCGAC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14213 FBgn0031047 FBtr0074743 2 1 2 80 X 19533364 19533382 CATATGAATCCTCAGCAGC 58 19533426 19533496 ATTGATCCACTGGTACACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15865 FBgn0015336 FBtr0074375 3 1 1 60 X 16557725 16557872 CATCTTCGAAGAGTCCACC 59 16557683 16557703 TTCTCAAAGACCACATAGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lsd-2 FBgn0030608 FBtr0073967 2 1 3 261 X 14968211 14968229 CCAGGAGATCTACAACCAG 58 14967423 14967989 ATCATTATCTTCCTCGACATCC 59 NA DesignNoJunction Drosophila melanogaster 50 Ptp10D FBgn0004370 FBtr0073525,FBtr0073524,FBtr0073522 2 3 3 90 X 11518239 11558771 TTACACTAAAGGACGTTCGA 58 11558824 11558842 TAGTCCAGTCGATAGGAGG 59 NA Drosophila melanogaster 50 CG2972 FBgn0030177 FBtr0071430 3 1 1 74 X 9977537 9977555 CATTAAACACTGCGTGGAG 59 9977592 9977611 ATCACTTTCAGATCGATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34028 FBgn0054028 FBtr0100083 3 1 1 171 X 9405638 9405726 AAACAAACGTGGACATATCG 58 9405860 9405878 AGATATTAACCTCGCCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rdgA FBgn0085373 FBtr0112550,FBtr0112552,FBtr0112551 2 3 3 115 X 8918161 8918303 TCTCAATATGTTACGTGCAC 57 8918381 8918399 ATTTGACAATGTCCCTGTG 57 NA Drosophila melanogaster 50 Tre1 FBgn0046687 FBtr0070848 1 1 1 88 X 5568181 5568268 AATCGCAACTACAGAGTGG 59 5568111 5568129 TAGTTTCTACTCGGCATCG 58 NA Drosophila melanogaster 50 pon FBgn0025739 FBtr0070681 3 1 1 199 X 4530752 4530770 CAAGTCCATAGCTGATCTG 57 4530932 4531145 CCTCATATGGATTGAACTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Crg-1 FBgn0021738 FBtr0070599 3 1 1 261 X 3689012 3689030 CTCTGATTTGTGCGTTCTC 58 3689254 3690704 GGAAGTAGATGCGATATCCA 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG14815 FBgn0023516 FBtr0070367 3 1 2 79 X 1762864 1762883 TATTATTAGAGCGCTGTGCA 59 1762732 1762822 TGGAGATGCTACGTAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9717 FBgn0039789 FBtr0085679 1 1 1 70 3R 26410832 26410850 GTCTTCATCCTCTACCAGG 58 26410589 26410798 TTCAGACCAGTAGTTGTCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG15531 FBgn0039755 FBtr0113309,FBtr0085572 2 2 2 111 3R 26021245 26021263 GGTCTTCTGAAGTACTCGC 59 26021090 26021171 ACAGCAGGACATAGAATCTC 58 NA Drosophila melanogaster 50 Bub3 FBgn0025457 FBtr0085465 2 1 1 65 3R 25500775 25500846 CCTTCATGGACATAGTGCA 59 25500728 25500746 TGACATCAAAGAGACGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1894 FBgn0039585 FBtr0085290 2 1 1 79 3R 24310405 24310423 TAAAGTATCAGCCGTTGGG 59 24310466 24310565 ATTAGTCAATTGCAGGGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12250 FBgn0039345 FBtr0084895 1 1 2 100 3R 21434507 21434594 GTTAAGAAAGAATCTGGTACCG 58 21419451 21419469 AAATCGCAATAATGGGCAC 59 NA Drosophila melanogaster 50 AP-1sigma FBgn0039132 FBtr0084496 3 1 1 98 3R 19785069 19785087 ATTCATCGCTATGTGGAGC 59 19785213 19785234 CTCATCCAGGATAAAGTATGCT 59 NA DesignNoJunction Drosophila melanogaster 50 Aats-glupro FBgn0005674 FBtr0084512,FBtr0084511 2 2 2 208 3R 19779100 19779185 CAGTGGAATAACGTTGTCC 58 19778910 19778928 TTCTCCTTCTCAGTCTTGC 58 NA DesignNoJunction Drosophila melanogaster 50 Tango12 FBgn0051052 FBtr0084367 2 1 1 98 3R 18812460 18812536 CTGTTCCTCAGGGAAATGG 59 18812380 18812398 CCGGAGTATCATGAACCAC 59 NA Drosophila melanogaster 50 Gr93a FBgn0041229 FBtr0084133 1 1 1 60 3R 17659483 17659563 AGTGTTGAAACATTTCTCGG 58 17659583 17659604 ATCCCAATACTTTGATCTCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sec15 FBgn0038856 FBtr0084034 2 1 1 71 3R 16932409 16932427 TAAGTGCTACGGTTACACC 59 16932292 16932376 ACCTCATTATAATGATCCCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7715 FBgn0038646 FBtr0083685 3 1 1 99 3R 14554043 14554135 TGAAAGTATTCGCATTGTGC 59 14553963 14553981 CAGCGGATACTGATCTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7708 FBgn0038641 FBtr0083669,FBtr0083668 2 2 2 99 3R 14509015 14509033 TTCTGTCCTATGTTGCAGC 59 14509095 14509244 TAATCTGTCTCGTTCCAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 ARP-like FBgn0027095 FBtr0083283 2 1 1 80 3R 12175455 12175474 CTACAAACAGATCGAAACGG 58 12175515 12175621 CCGAGGTAGTAACAGAATCTG 59 NA Drosophila melanogaster 50 CG14866 FBgn0038315 FBtr0083081 3 1 1 78 3R 11143157 11143231 GTGGATTACCTGGAGAGTC 58 11143273 11143291 CCTCCTTCTGATTGTTTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4334 FBgn0038312 FBtr0083065 1 1 1 115 3R 11095246 11095264 CACTCTGGGTCTCTTTGTC 59 11095341 11095468 GAAACAGAACTATGTCAAGGC 59 NA Drosophila melanogaster 50 Oscp FBgn0016691 FBtr0083064,FBtr0083063 3 2 2 108 3R 11092087 11092168 CTTAAGTCTTTCCTGAAGGG 57 11092239 11092257 TCATGTCGACGTACTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31259 FBgn0051259 FBtr0081871 1 1 1 158 3R 4351253 4351344 TTTCAAGTCGACTACCTGC 59 4351466 4351484 TTGTAGAGCAGATGCATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10999 FBgn0037381 FBtr0078635,FBtr0078634,FBtr0078636 1 3 3 61 3R 1644167 1644185 GCAACCGTTCAACTTACAG 59 1644210 1644228 CTTCTTCACTCCAGTGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2082 FBgn0027608 FBtr0078675,FBtr0078674,FBtr0078672 2 3 5 121 3R 1587428 1587903 CAAGAACAAGTTCATTAGCTGG 59 1586644 1586662 CCACGATCTTCTCCTTGTC 59 NA Drosophila melanogaster 50 CG9780 FBgn0037230 FBtr0078959,FBtr0078960 2 2 2 61 3R 119497 119518 CATGGTTCGACTTCTTAATTGG 59 119072 119475 AGTCTGCATCTACGATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32477 FBgn0052477 FBtr0072500 2 1 1 81 3L 227384 227405 CATCTCATCTATAGCTTCTGAG 57 227447 227523 AAGCGTCATTTCTCAAACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Six4 FBgn0027364 FBtr0078274,FBtr0078275 1 2 2 78 3L 20782260 20783242 AAAGACCGGACATCATGTC 59 20782200 20782218 CTTGGAGCATTGAACATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7298 FBgn0036948 FBtr0074859 3 1 1 228 3L 20195799 20196021 ATCAAACTGCATACAACGTG 59 20195590 20195609 CAGTACCCTAAACTGTCGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG33710 FBgn0053710 FBtr0091698 1 1 1 111 3L 19945648 19945666 AAGTACAGGATTTACGTGC 57 19945490 19945574 CCCATTGATAACGTAATCCT 57 NA DesignNoJunction Drosophila melanogaster 50 Mi-2 FBgn0013591 FBtr0074919 1 1 2 112 3L 19903143 19903164 GAGAATGACGATAATTTCCAGG 58 19881562 19881642 TCGTCTTCGTCGTTATTCG 59 NA Drosophila melanogaster 50 Cpr76Bc FBgn0036880 FBtr0113180 1 1 1 151 3L 19516472 19519135 CATTATGAGCATCAGGGCT 59 19519250 19519268 TAGTGAACCGTTCGTATGG 59 NA DesignNoJunction Drosophila melanogaster 50 Msi FBgn0043025 FBtr0075192,FBtr0110847,FBtr0110846 1 3 3 79 3L 17748786 17748806 TGATCTATGCTCCTTCTAGGA 59 17748668 17748745 ATGCAACTTAAGCAGACGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG7656 FBgn0036516 FBtr0075594 1 1 3 165 3L 15579681 15580105 GGGTAAGGACAATGAGTATCC 59 15579536 15579554 ATCGTAGAAGTTGGCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32044 FBgn0052044 FBtr0076407 3 1 1 219 3L 9746517 9747045 CGTTCGAACTGAAGAAGGA 59 9746316 9746337 GCAATGTATTCATTACTCCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS9 FBgn0010408 FBtr0076423,FBtr0076424 3 2 3 164 3L 9504210 9504228 CTGGCTAAGATCCGTAAGG 59 9503660 9503678 GTCCTCAATCTTCAGACCC 59 NA DesignNoJunction Drosophila melanogaster 50 pix FBgn0086706 FBtr0076558,FBtr0076557 2 2 2 82 3L 8966608 8966629 CTCGTATTTGGATGTTAAGCAG 59 8966488 8966568 CCACAATAATAAACTTGGTGGG 59 NA Drosophila melanogaster 50 Cdc6 FBgn0035918 FBtr0076647 2 1 1 61 3L 8625390 8625486 AAGCAAGACACTCTAAAGC 57 8625347 8625365 TAGACCTTGTTCAGCACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17744 FBgn0035730 FBtr0076932 1 1 1 60 3L 7019530 7019618 AGCCTTCACAGATATGAATGG 59 7019490 7019508 CGGTAGTCCCTTTAAAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10147 FBgn0035702 FBtr0076987 2 1 1 131 3L 6480892 6480970 AAGAAAGCTTTGGAAGAGC 58 6480779 6480797 CTCAGTGCAATGATACAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6592 FBgn0035669 FBtr0077044 3 1 1 85 3L 6053711 6053729 TCTACCCTACCTGGAATCC 59 6053778 6053854 GATGCGCTCATTAAAGCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG1079 FBgn0026592 FBtr0073157 2 1 1 80 3L 3894050 3894068 TACGCACCATGAATAAGCT 59 3894112 3894184 GGAAACGATAGGGTATGGC 59 NA Drosophila melanogaster 50 CG12018 FBgn0027903 FBtr0072775 3 1 1 60 3L 1776016 1776034 TGTTCTGGAGGATGAACTG 58 1776057 1776076 TAAGAGCTGTCCATTTAGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7995 FBgn0035266 FBtr0072769,FBtr0072771,FBtr0072768,FBtr0072770,FBtr0072767 2 5 5 157 3L 1743701 1743719 CATCTCCACGTACTTCTCG 59 1743909 1743927 TTACATCCGTGATGTGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 metl FBgn0035247 FBtr0072813,FBtr0072814 1 2 2 97 3L 1638854 1639059 CTTCAAGCACAATGCTTGG 59 1638775 1638793 CTTCCATCTTTGAGGTCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32335 FBgn0063667 FBtr0072636 3 1 1 232 3L 1202785 1202887 AAAGAGTCATACAGGGTGC 59 1202571 1202589 AAAGATCTTTCCTGCTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34453 FBgn0085482 FBtr0112759 3 1 1 95 3L 232916 232934 TGAGTCCAGATTACAAGCA 58 232782 232858 CAATGGTAGAGCTTGAAGTG 58 NA Drosophila melanogaster 50 Lsp1gamma FBgn0002564 FBtr0072463 3 1 1 60 3L 66671 66689 GAATGGATTAAGATGGGCC 57 66711 66796 AATCGAAGGTCTCGTATTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4612 FBgn0035016 FBtr0072346 2 1 1 225 2R 20412375 20412396 GCACTTCAAGAATCTGTATGTG 59 20411940 20411959 GTACAAGAACTTGTTGTCGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9850 FBgn0034903 FBtr0100330,FBtr0100329 2 2 2 80 2R 19654955 19655679 GATAATCTGCAGGTCAAACG 58 19654894 19654912 TCTGGGACCCTTTAGTAGG 59 NA Drosophila melanogaster 50 CG30417 FBgn0050417 FBtr0072041 1 1 1 60 2R 19214916 19214935 GATTACCATGAGATTGTCCG 58 19214875 19214893 TATTCAAACGATGCCTCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32834 FBgn0052834 FBtr0071991 2 1 1 67 2R 18871011 18871029 AAGATGAGGATACAACCGC 59 18870864 18870980 GTACTGGGTACGGTAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11170 FBgn0034705 FBtr0071786 2 1 1 60 2R 18065564 18065582 TGTTTCGTACTTGGAGCAG 59 18065522 18065542 GTACATCATGTAGAACCACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4386 FBgn0034661 FBtr0071743 3 1 1 152 2R 17687668 17687687 CCATCATCAAGTTGGATGAG 58 17687470 17687554 CCTGAAGAGTATCGGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Obp56h FBgn0034475 FBtr0086335 1 1 1 60 2R 15703089 15703108 TCACCCTATTCTGTATTGCT 58 15703131 15703207 AAGTCCGGATTACACTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cer FBgn0034443 FBtr0086551 1 1 1 105 2R 15284056 15284135 GTACAAGTCCAAGTTCGAC 58 15283969 15283987 GAACTTCCGATTGTGTTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpS28 FBgn0034361 FBtr0086714 1 1 1 228 2R 14502098 14502177 TAATTGATCTGGACAACGC 57 14501831 14501852 GCCTCTAGAATGGTAATATCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG5174 FBgn0034345 FBtr0086688,FBtr0086684,FBtr0086689,FBtr0086687,FBtr0086686 1 5 7 275 2R 14309058 14311650 CATAATACAGCCAACCTGTC 58 14311962 14311980 CTTGAGGTTCTTAAGGCCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG18537 FBgn0034323 FBtr0086759 3 1 1 64 2R 14183669 14183690 GTGGAAAGTTTGGAATATCAGC 59 14183715 14183796 CACCATTGTCTCCTCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15609 FBgn0034180 FBtr0114626,FBtr0114629,FBtr0087019,FBtr0114627,FBtr0114628,FBtr0114625 1 6 6 90 2R 12899519 12899537 TAAGGTTACCAACCTGACG 58 12899312 12899465 AGACATGTCAATGAGCTCC 59 NA Drosophila melanogaster 50 Vkor FBgn0053544 FBtr0091510 2 1 1 62 2R 12666129 12666147 CAAGTAAATGCTCCCAACG 59 12666172 12666246 AGAGCTCAAGAAGTACAGGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG10151 FBgn0033960 FBtr0087471,FBtr0087472,FBtr0087473 1 3 3 69 2R 10641377 10641492 GCAATGAGAATCCTTCTTCG 58 10641327 10641345 AACGATTGTGTTGGATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16728 FBgn0033539 FBtr0088258 1 1 1 81 2R 6529715 6529795 TTTATGCCAATTTGCCACC 59 6529652 6529670 TGGATGAGAATGTTCTGGC 59 NA Nonspecific Drosophila melanogaster 50 CG3107 FBgn0033005 FBtr0086078,FBtr0086077,FBtr0111280 3 3 3 140 2R 979965 980034 TTAGATGCCGTATTCAGACC 59 980137 980155 AAACGCACCTTTCATTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR9337 FBgn0032898 FBtr0081448 3 1 1 130 2L 20863229 20863247 TACATCAACCCGATTAAGC 57 20862939 20863011 GGTTTGCTGTACTCATAGC 58 NA DesignNoJunction Drosophila melanogaster 50 Hr39 FBgn0010229 FBtr0081481,FBtr0081480,FBtr0081479,FBtr0081478 1 4 4 104 2L 21255223 21255241 TAGTTTGGCAGGAACTTCG 59 21255309 21255551 ACATCCATGATTTCCTGCA 59 NA Drosophila melanogaster 50 sNPF FBgn0032840 FBtr0081327,FBtr0081326 2 2 2 95 2L 20054735 20054896 AAATTGAACGATCGCAATGG 59 20054954 20054972 TCTCCGGAATTTCGTACTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10194 FBgn0032790 FBtr0081285 3 1 1 117 2L 19489642 19489722 TAAGAAATCGCTGGATCCA 58 19489543 19489561 ATAATCGCTAGTGGAGGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG10859 FBgn0032520 FBtr0080522 1 1 1 121 2L 13396959 13396977 GAACAATGCTAACCGTGAG 58 13396792 13396875 TATCTCCCGTTCAAACATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6583 FBgn0032420 FBtr0080358 2 1 1 232 2L 12171920 12172130 GAGAGGATTCATCTGGGAC 58 12171706 12171725 TAAATATTCTGGAGGCAACG 57 NA DesignRelaxed Drosophila melanogaster 50 CG31755 FBgn0051755 FBtr0079972 1 1 1 74 2L 9999032 9999116 AAATCAGAGCCCTAATCGG 59 9998976 9998994 TGAATGTTTCTCACTGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG7795 FBgn0032019 FBtr0079611,FBtr0079610 3 2 2 97 2L 8319141 8319159 TAAGACCAGTTGCGATGTG 59 8318946 8319082 CTTCAGGAACAACACTTTCTG 59 NA Drosophila melanogaster 50 baf FBgn0031977 FBtr0079535 2 1 1 77 2L 8029724 8029824 ATTCGATATGGCCTACACC 58 8029864 8029883 TTCATCCAGTCCTTGAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7154 FBgn0031947 FBtr0079488 1 1 1 134 2L 7785623 7785701 CTATGGGCATGTCCTATGC 59 7785799 7785817 CATCAGACTCGTCGATCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3347 FBgn0031513 FBtr0077579 2 1 1 62 2L 3270778 3270935 GACACGTTGGTTTATTGGT 58 3270959 3270979 GACTACGATATCTCGATTTCC 57 NA DesignNoJunction Drosophila melanogaster 50 CG10880 FBgn0031398 FBtr0077843 1 1 1 102 2L 2215597 2215615 AGATCACCGAAGAGATTGC 59 2215458 2215531 TTCTTCTTGTGACTCTCGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2807 FBgn0031266 FBtr0078068 2 1 1 139 2L 568422 568607 GAACACATGAAGATATCGAGG 58 568708 568726 ATCATCGTCGTACAAGTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR31167 FBgn0051167 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Psi28S-612 FBgn0082953 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CR40677 FBgn0085765 FBtr0114215 1 1 1 60 XHet 184756 184775 CAGCACTAAGTCACTTTGTC 58 184796 184816 ATATTGACGCTCCATACACTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 bves FBgn0031150 FBtr0077247,FBtr0077246 3 2 2 122 X 20946709 20946806 TGACTACTTTCAGGTCTCCA 59 20946891 20946909 AGAATGTGATCGAAGACGG 59 NA Drosophila melanogaster 50 Fur2 FBgn0004598 FBtr0074266,FBtr0074262,FBtr0074264,FBtr0074267,FBtr0074265,FBtr0074261,FBtr0074263 1 7 7 80 X 16273085 16273103 TTTGGTTATGCATGAGCAC 58 16273145 16273233 CAGAAGGCACATTTGTTATCC 59 NA Drosophila melanogaster 50 CG1764 FBgn0030467 FBtr0073796 2 1 1 60 X 13189572 13189591 CCTATCCCGAATATCCAGTG 59 13189387 13189405 TAGTACTTCAGCCTCTTGG 57 NA DesignNoJunction Drosophila melanogaster 50 CkIIbeta FBgn0000259 FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559 3 5 6 164 X 11689031 11689146 TTTGTTCCAAGGCTATATGG 57 11689687 11689705 TTGTATTCGTGCGTATGTG 58 NA InUTR Drosophila melanogaster 50 CkIIbeta FBgn0000259 FBtr0073558,FBtr0100540,FBtr0073561,FBtr0073560,FBtr0073559 2 5 6 163 X 11689032 11689147 TTGTTCCAAGGCTATATGGA 58 11689687 11689705 TTGTATTCGTGCGTATGTG 58 NA InUTR Drosophila melanogaster 50 CG18624 FBgn0029971 FBtr0071140,FBtr0071141 3 2 2 126 X 7787312 7787330 GTCTTGGGACTGGATAAGC 59 7787204 7787222 CGTATAGGGCACTCTTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 trr FBgn0023518 FBtr0070362,FBtr0070363 2 2 2 83 X 1776708 1776783 CTTGGCGAGATCTAAGATCC 59 1776644 1776665 CCAATGTACTCGATTATCATGG 58 NA Drosophila melanogaster 50 CG3638 FBgn0026875 FBtr0070248,FBtr0070246,FBtr0070249,FBtr0070247 3 4 4 88 X 1117713 1117731 TTATTTGGCCTCCAGTGTG 59 1117575 1117661 CATAGGGACTTCTCATGCC 59 NA Drosophila melanogaster 50 Dredd FBgn0020381 FBtr0114561,FBtr0114560,FBtr0114559 2 3 3 81 X 528200 528221 GAAGTTGCTAATCATACAAGCC 59 528072 528160 GGTCACGTCTATCCTAAAGAG 59 NA Drosophila melanogaster 50 CG40196 FBgn0058196 FBtr0113830,FBtr0113829,FBtr0113831 3 3 3 121 U 1092306 1092325 CAGATCTAAGTTGCGATCCT 59 1092151 1092224 GTAAAGAGAATTCACTGCTCG 59 NA Drosophila melanogaster 50 CG11120 FBgn0039250 FBtr0084716 1 1 2 83 3R 20749876 20749895 TTTCAGAGTCCTATTGAGGT 57 20749941 20750011 CCGGTTATTGACATTGGTC 58 NA Drosophila melanogaster 50 tin FBgn0004110 FBtr0084086 2 1 1 289 3R 17206635 17206654 CATCTACGGTTCAGATGAGG 59 17207331 17207352 GATTCTGGAACCAAATCTTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 rdx FBgn0086364 FBtr0082872,FBtr0082871,FBtr0082874,FBtr0100852,FBtr0100361 3 5 5 91 3R 9796061 9796080 TAAATCAGAAGTCAGAGCCA 58 9795916 9796007 AACGATAAGCTCTTTGGGA 58 NA Drosophila melanogaster 50 mfas FBgn0024211 FBtr0082503,FBtr0082489,FBtr0082501,FBtr0082496,FBtr0082492,FBtr0082491,FBtr0082493,FBtr0082490,FBtr0082497,FBtr0082500,FBtr0082495,FBtr0082498,FBtr0082494,FBtr0082502,FBtr0082499 2 15 15 121 3R 7812116 7812134 CTAGAGGATGACAAGCCAG 59 7811941 7812031 TTCTTCAGGATGTTGGAGG 58 NA Drosophila melanogaster 50 CG14683 FBgn0037822 FBtr0100412,FBtr0082267 3 2 2 60 3R 6523607 6523627 CCTAAACCCTACTAGACTGAG 58 6523648 6523667 AGTCGTCACATCTATAGAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8866 FBgn0037679 FBtr0082056,FBtr0082055 3 2 2 87 3R 5158584 5158666 GCTATAAACAGCTATATGCCC 58 5158517 5158535 TAGAGGTATAGCTCACCCT 57 NA Drosophila melanogaster 50 Itp-r83A FBgn0010051 FBtr0078686 3 1 2 96 3R 1356978 1356998 CTTCTAAGACTTACGAAGACG 57 1357055 1357390 CACCTTCGGAATCAATATCC 58 NA Drosophila melanogaster 50 Gel FBgn0010225 FBtr0078971,FBtr0078968,FBtr0078973,FBtr0078972,FBtr0078969 1 5 5 135 3R 66120 66138 TCAATACGAGCAAGAGGAC 59 66237 66319 AAAGTAAAGCTTTGCCGTG 59 NA Drosophila melanogaster 50 CG11489 FBgn0025702 FBtr0078496 3 1 2 95 3L 22274874 22275670 CTGCTACGACTACCATCAC 59 22275729 22275747 TCGGCGGTATAATTGTACG 59 NA Drosophila melanogaster 50 CG32206 FBgn0052206 FBtr0089795,FBtr0089796 1 2 2 80 3L 19357771 19357789 TCCGACTCATTTGACTTCG 59 19348668 19357728 TAGCACATCATCTGGATTCG 59 NA Drosophila melanogaster 50 blot FBgn0027660 FBtr0075235,FBtr0075233,FBtr0075234,FBtr0075232 2 4 4 129 3L 17391426 17391508 GTTGTAATGCTGTGCACAC 59 17391315 17391333 AGTAGTGACGACTGAAGGA 59 NA Drosophila melanogaster 50 CG11905 FBgn0036678 FBtr0075304,FBtr0075301,FBtr0113173 1 3 10 208 3L 16926458 16928309 AATGCGCTTTCTTGTTCTC 59 16923957 16923975 GTTGATAGGCTCCATAGGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Cpr67B FBgn0035985 FBtr0076455 1 1 1 60 3L 9398614 9398633 CCATCAGTATCATGGTCAGG 59 9398656 9398674 GTTCCAATCCCTATAGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17150 FBgn0035581 FBtr0073349 2 1 3 80 3L 4865995 4866015 CTTATCGATCTACAGGAGGAC 58 4866052 4866138 CCTCTCCATATTAGACGATAAGAG 59 NA Drosophila melanogaster 50 ago FBgn0041171 FBtr0073246,FBtr0073247,FBtr0073245 1 3 3 99 3L 4247723 4247741 AATTGTGGGACGTTAAGAC 57 4247576 4247660 GTGTCGTTTGCTCTAATCC 58 NA Drosophila melanogaster 50 CG1244 FBgn0035357 FBtr0072936,FBtr0072934,FBtr0072932,FBtr0072935,FBtr0072931,FBtr0072933 2 6 6 90 3L 2640506 2640585 TCTGTGGAAGGATGTACCA 59 2640639 2640657 CACTTGTAGGACAGGTGAG 59 NA Drosophila melanogaster 50 CG13925 FBgn0035291 FBtr0072838 1 1 1 67 3L 1921630 1921648 TGTAGAAAGCATCGAGGAG 58 1921679 1921697 TATCGGCGACTATTTCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 5SrRNA:CR33358 FBgn0053358 FBtr0086350 1 1 1 62 2R 15651889 15651907 AATACATCGGTTCTCGTCC 59 15651845 15651863 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4324 FBgn0034956 FBtr0072197 2 1 2 117 2R 19904314 19904332 TATCTGAACAACGAGCCAG 59 19904158 19904233 CAGTGTAGGTATCATCCGG 58 NA Drosophila melanogaster 50 TBPH FBgn0025790 FBtr0089627,FBtr0089626,FBtr0089625,FBtr0089624 1 4 4 143 2R 19748031 19748104 CATTATCAAGGGCGTTTCG 59 19747906 19747924 TTCATGTGGTTACCCTGTG 59 NA Drosophila melanogaster 50 Vrp1 FBgn0034695 FBtr0071795,FBtr0071792,FBtr0071793,FBtr0071794,FBtr0071796,FBtr0071791,FBtr0113104 2 7 7 87 2R 17998431 17998841 CAACCTAAATATCTCGTTAGGC 58 17998365 17998384 TAGACTGCTGTTTAAGGACG 59 NA Drosophila melanogaster 50 pAbp FBgn0003031 FBtr0086738,FBtr0086736,FBtr0086741,FBtr0086739,FBtr0086742,FBtr0086737,FBtr0086743,FBtr0086740 1 8 8 97 2R 14032395 14032483 AGGAAAGAATTCTGAGAAGC 57 14032543 14032561 CAATCATCGGATACAGACG 57 NA Drosophila melanogaster 50 CG6550 FBgn0034214 FBtr0086961 1 1 1 60 2R 13314614 13314635 GGATATAGATTGAGTGGAAAGG 57 13314575 13314593 TAACCGTGCAGCTATTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Syn2 FBgn0034135 FBtr0087095,FBtr0087096 1 2 5 118 2R 12442744 12443115 TCCTTCAGAAACAACTACCTC 59 12443195 12443213 GACACCTGTGGAAATTCCA 59 NA Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087272,FBtr0087270,FBtr0087273,FBtr0087271 3 4 7 90 2R 11848682 11848827 CCAATTCGAGACACATATTCTC 58 11848613 11848631 TGATCCATTGGATTTCGGG 59 NA Drosophila melanogaster 50 CG33468 FBgn0053468 FBtr0087503 2 1 1 60 2R 10494193 10494211 TGGTACATGTACTATGCGA 57 10494151 10494169 TACGATGGATCTGATCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mam FBgn0002643 FBtr0087597,FBtr0087596 2 2 3 60 2R 9943543 9943629 CAATGCAAATGTTCCCTCC 59 9943652 9943671 GTTAAAGTTCATGCTTTGGC 58 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG30048 FBgn0050048 FBtr0100374,FBtr0087919 2 2 2 60 2R 8284127 8284146 CATAAAGGTGCTCGTATGTG 58 8284166 8284187 CTTAACCTCTATCCAAGTTGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ced-6 FBgn0029092 FBtr0088550,FBtr0088548,FBtr0088549 2 3 3 133 2R 5324291 5324933 CTAGTCAAGTTCTTTGGTAACC 58 5324179 5324197 TTCTTGAACTTCTCCTGGG 58 NA Drosophila melanogaster 50 pk FBgn0003090 FBtr0089043,FBtr0089044,FBtr0089042 3 3 3 121 2R 3106568 3106586 GTACTTCTCGCAGATACCC 59 3106671 3107974 AGTGACAGTAACGAACCTC 58 NA Drosophila melanogaster 50 crc FBgn0000370 FBtr0081512 1 1 3 87 2L 21312193 21318132 GACCTGAAAGATGAAGAATGTC 59 21318180 21318198 TAATGTTCGGCTGAAAGCT 59 NA Drosophila melanogaster 50 CG31751 FBgn0086909 FBtr0081092 1 1 2 60 2L 18679136 18679154 CGCAACTTCTTTGTCAAGG 59 18682281 18682299 GACAGTGGGTTACAATGAG 57 NA DesignNoJunction Drosophila melanogaster 50 cact FBgn0000250 FBtr0080844,FBtr0080845,FBtr0080847 2 3 4 127 2L 16314551 16314569 CGTGCATCATGAACAAGTC 59 16313442 16314462 ATCGTACATCTTCGTATCGTC 59 NA Drosophila melanogaster 50 CG33642 FBgn0053642 FBtr0091619 2 1 1 60 2L 13530470 13530488 GATGAGAAGGATCTACCGC 59 13530512 13530530 AATATTCGGTGACAGTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17768 FBgn0032240 FBtr0100253 1 1 1 60 2L 10403734 10403752 GCGATGTTATTTGCACCTC 59 10403519 10403537 ATATAACATTCGGGCATGC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG31708 FBgn0051708 FBtr0079776,FBtr0079777 3 2 2 117 2L 9055110 9055128 ACCCATATGAAGTTGACCA 58 9053421 9055030 GATATGAAACGTACAGTCGT 57 NA Drosophila melanogaster 50 Gr28b FBgn0045495 FBtr0079462,FBtr0079461,FBtr0079460,FBtr0079459,FBtr0079458 1 5 5 117 2L 7455130 7455212 TTGTATTTCACGATCAGCG 58 7455031 7455049 TATTGAAGGTCTCACAGCA 58 NA Drosophila melanogaster 50 CG5171 FBgn0031907 FBtr0114588 2 1 3 71 2L 7402923 7402941 AGATCCATCAGGGATAGGT 58 7402973 7403237 TAGATTTCACTTAAGGTAGCCG 59 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG11327 FBgn0031849 FBtr0079316,FBtr0079315 1 2 2 60 2L 6685613 6685633 GATCCTACAGACGTAGAATCC 59 6685573 6685592 TTTCGAGTTCCTCCATATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mtm FBgn0025742 FBtr0079223 2 1 1 60 2L 6035375 6035393 GTTCAACAACGCATTTGAG 58 6035333 6035352 GTACAGATGATCCACGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33496 FBgn0053496 FBtr0089609 2 1 1 70 X 20081276 20081388 TGATGGCCATAGTTGAGTG 59 20081224 20081242 ATTCATGGCCTTGTACAGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 inx5 FBgn0030989 FBtr0074698 2 1 1 60 X 19063547 19063860 CTCAATTTCCTCATCAGTGTG 58 19063507 19063525 AGAATCCGTTCAGGAACAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5800 FBgn0030855 FBtr0074453 3 1 1 105 X 17530777 17530871 TTCTCATACCCGTTCTGGA 59 17530940 17530958 AAGATCTGGTAGGCTAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hdm FBgn0029977 FBtr0071133 3 1 1 107 X 7813103 7813124 CATACATCAGTTTACTGCAGTG 59 7812914 7812933 GGTATATGTTGTTGACAGGC 58 NA DesignNoJunction Drosophila melanogaster 50 thoc7 FBgn0035110 FBtr0072527,FBtr0072526 1 2 2 80 3L 212492 212512 GAGGATCGGAGAATAGTAGTG 58 212367 212450 GTACATGATGGGATTGCTG 58 NA Drosophila melanogaster 50 CG13502 FBgn0034692 FBtr0071799,FBtr0113103 3 2 2 64 2R 17974262 17974281 GAGATCAAGAATGCCAATCC 58 17974055 17974235 CTATTCAGCTCAAGAGCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30461 FBgn0050461 FBtr0100250,FBtr0100252 2 2 4 88 2R 12884216 12884501 AATGCTACAACACGATCCT 58 12884146 12884164 TTCGGTTTACTAATCGGCC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12129 FBgn0033475 FBtr0088395 3 1 1 150 2R 5921048 5921118 AAGAGCCGGATCTTTATGG 59 5921285 5921303 TTCGTAGATCCTTTCATGC 57 NA DesignNoJunction Drosophila melanogaster 50 Pka-R2 FBgn0022382 FBtr0088438,FBtr0112902,FBtr0112901,FBtr0088437,FBtr0088439 2 5 5 71 2R 5886301 5886941 TGTTATTGAATCTGGCGTC 57 5886248 5886266 AGTCCAGTGTGATTGTAGG 58 NA DesignRelaxed Drosophila melanogaster 50 rho-6 FBgn0032415 FBtr0080359,FBtr0080360 3 2 2 237 2L 12131047 12131293 AGTGCTTTATAGGTATCTGCC 59 12130762 12130780 AACAATATCAGCAGGGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG15628 FBgn0031632 FBtr0077384 1 1 1 73 2L 4825640 4825658 CGTTTGGTGCATGAATCAG 59 4825695 4826448 AACTTTAACGATTCCGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 mir-315 FBgn0067689 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-8 FBgn0046815 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:G3:56EFa FBgn0011869 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG12576 FBgn0031190 FBtr0077365 1 1 2 69 X 21882351 21882369 TCACAGTCGTCCTAATGTC 58 21879272 21879290 ATCCAGTAGCCAAGTAGTC 58 NA DesignNoJunction Drosophila melanogaster 50 CG34019 FBgn0054019 FBtr0100074 1 1 1 89 X 21296891 21296909 ATTTCTCCACCTTTCTCCT 57 21296672 21296838 AATCATTTCACGTGAGGAG 57 NA Drosophila melanogaster 50 shakB FBgn0085387 FBtr0114645,FBtr0112570,FBtr0112571,FBtr0112569,FBtr0112572 3 5 5 82 X 20644231 20644250 AACGCTAATATACAGGGTGG 59 20643790 20644186 GACGCACTAACCTAAATCG 58 NA Drosophila melanogaster 50 sw FBgn0003654 FBtr0089406,FBtr0089407 2 2 13 96 X 20105884 20105902 TGGTCTACACAAAGCAGAC 59 20104508 20105410 GTAGCATGAGCTTTACGTG 58 NA Drosophila melanogaster 50 gfA FBgn0086778 FBtr0074679,FBtr0074680 3 2 3 104 X 19235952 19235970 TTTCAATCTGATTGTGCCG 58 19234610 19235884 AGAATTGTAACTCCAAGCG 57 NA Drosophila melanogaster 50 CG34422 FBgn0085451 FBtr0112722,FBtr0112723 3 2 2 78 X 18739501 18739520 GATCTGTATCGTCTGTTCCG 59 18739561 18739579 TGAGCTTCCACTGATTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32551 FBgn0052551 FBtr0074564 1 1 1 66 X 18333923 18333941 AAGTTCGGAGTATGGTGAC 58 18333971 18333989 GATGTTCGATGCTTGTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5703 FBgn0030853 FBtr0074452 1 1 1 87 X 17527063 17527081 GAAGTTCACCATCTCGGAG 59 17527129 17527304 CAGATCCTCATAGTAGTCATCG 59 NA Drosophila melanogaster 50 f FBgn0000630 FBtr0110991 2 1 6 117 X 17157004 17162564 GATATTTGCTACTTCTCCACG 58 17162643 17162661 TGTGGATGTCATTGTTGGA 59 NA Drosophila melanogaster 50 CG32564 FBgn0052564 FBtr0074390 2 1 1 79 X 17100859 17100877 ATCAAGGTCATCAAGGTGG 59 17100920 17100938 TATCCTCCATAGTTGCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mthl1 FBgn0030766 FBtr0074314 2 1 1 62 X 16536973 16536992 GATCTTCGCCTACTTCTACG 59 16537017 16537035 ACGAAGAGCGCTATATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Stim FBgn0045073 FBtr0074161 2 1 3 132 X 15831777 15833077 GAGCATAAGTTCCATGGGA 59 15831663 15831681 ATCATCTAGCTGACGATGC 59 NA Drosophila melanogaster 50 CG8565 FBgn0030697 FBtr0074103 1 1 1 104 X 15734054 15734324 CATATACGACTGGAACCGG 59 15734391 15734410 CTATCTTCACCCGTACATCG 59 NA Drosophila melanogaster 50 sd FBgn0003345 FBtr0112826,FBtr0074101,FBtr0074100,FBtr0112827,FBtr0074099,FBtr0112824,FBtr0112825 3 7 7 83 X 15717700 15717788 GATCCATTGCTTGAGACTG 58 15717832 15717853 TTCGTAGAGATCTTTAAGTCCC 59 NA Drosophila melanogaster 50 CG15643 FBgn0030654 FBtr0074072 3 1 1 61 X 15465268 15465286 GCATTGGATACTACAGCTG 57 15465225 15465243 CTCATAAACACCGCAACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dob FBgn0030607 FBtr0073961 1 1 1 60 X 14961554 14961574 GACTTCATATTTCCCTTACCC 57 14961596 14961614 CTGAACTCCGACATTACCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18313 FBgn0030566 FBtr0073915 2 1 1 78 X 14274607 14274625 GCAAGCATAAGAGAATCCC 58 14274667 14274685 TTTAACGGTATCTTGGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ben FBgn0000173 FBtr0073855 3 1 1 61 X 13892369 13892387 CGGAGGACTATCCAATGTC 59 13892411 13892430 GTTCGGATGGTAGATCTTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32645 FBgn0052645 FBtr0073725 1 1 1 60 X 13044431 13044451 GACAAGGAGTTCAACATTTGG 59 13044473 13044996 TGCTAGATACCACGATCAG 58 NA DesignRelaxed Drosophila melanogaster 50 CG32650 FBgn0052650 FBtr0073698 2 1 1 60 X 12791988 12792008 GAGGCCTACAAGAAGATACTC 59 12791948 12791966 GCTTGATCTCTGCATACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3812 FBgn0030421 FBtr0073689,FBtr0073688 3 2 2 234 X 12663817 12663835 CATCATTGTGGCCAATCAC 59 12664123 12664141 CCACAGTTTGATACGTTGC 59 NA DesignNoJunction Drosophila melanogaster 50 ade5 FBgn0020513 FBtr0073705 2 1 1 60 X 12652967 12652985 CCAAGTTCGAGCTAAATGG 58 12652857 12652875 GTTCTACGCATAATGTCCA 57 NA DesignNoJunction Drosophila melanogaster 50 Karl FBgn0030334 FBtr0073556,FBtr0073557 3 2 2 86 X 11684951 11684969 TATTACGCATCCACAGAGG 58 11685017 11685102 CATCGTTATATGCTGATCCTC 58 NA Drosophila melanogaster 50 Vago FBgn0030262 FBtr0073427,FBtr0100644 3 2 2 60 X 10983568 10983589 TACAATCAGCAGTACTGTATGG 59 10983607 10983628 AGACTTCACCGATATAAAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vago FBgn0030262 FBtr0073427,FBtr0100644 1 2 2 60 X 10983570 10983590 CAATCAGCAGTACTGTATGGA 59 10983609 10983630 GAAGACTTCACCGATATAAAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Imp FBgn0030235 FBtr0073418,FBtr0073415,FBtr0073414,FBtr0073416,FBtr0073420,FBtr0073413,FBtr0073419,FBtr0073417 3 8 9 95 X 10692567 10692660 GAATAAGGGTGAAATTTGCC 57 10692491 10692509 TGCATGATCCGTTTAATGG 58 NA Drosophila melanogaster 50 CG2111 FBgn0030223 FBtr0071492 2 1 1 239 X 10554376 10554449 CATACGCAATTATTGCAGC 57 10554652 10554670 AGGATTATGTCCCGAATGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG1791 FBgn0030163 FBtr0112968,FBtr0071429 1 2 2 141 X 9857866 9857884 GTGATTCGCTACGTTACCA 59 9857683 9857762 GTACCAAACAAGTTGCTCTC 59 NA Drosophila melanogaster 50 t FBgn0086367 FBtr0071335 2 1 1 147 X 9112809 9112828 CCATCAATTTCACCTTCCTG 58 9112554 9112632 CGATCGAATTGATTGACATGG 59 NA Drosophila melanogaster 50 CG12661 FBgn0030071 FBtr0071265 3 1 1 61 X 8817389 8817408 GAGAATCGCCTAGAGAAGTG 59 8817347 8817366 TCCAAGCTATAATCGGATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sdt FBgn0003349 FBtr0100376 3 1 7 108 X 8103979 8103997 AATAATTCAATGGCAGCGG 58 8104067 8104451 TGACGTCTTCTAGTAACTCTC 58 NA Drosophila melanogaster 50 RpS6 FBgn0004922 FBtr0071137,FBtr0071135 3 2 3 270 X 7794950 7794968 TTCTACGAGAAGCGTATGG 58 7794185 7794203 CCTTCTTCAAGACGACCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Hira FBgn0022786 FBtr0071070 2 1 1 97 X 7618216 7618234 AGCATGCGACTAATTTCCA 59 7618295 7618457 CTGTTGTCCGGACTAAAGG 59 NA Drosophila melanogaster 50 CG4607 FBgn0029932 FBtr0071014,FBtr0071013 1 2 2 60 X 6964930 6964949 AAATCCCTCAGATACTTCCG 58 6965440 6965458 CGAATTCCGGTACGTAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG33692 FBgn0064121 FBtr0091675 1 1 3 165 X 6766947 6771957 AACCACATGTCACTAGCTG 59 6772086 6772104 CATTACCCGAATTCGAGGA 59 NA Nonspecific, InUTR Drosophila melanogaster 50 Pink1 FBgn0029891 FBtr0100419,FBtr0100415,FBtr0100413,FBtr0070957,FBtr0100414,FBtr0100420,FBtr0100416,FBtr0070956 1 8 8 166 X 6579447 6579465 ACAACGTCTTCCACTACAG 59 6579594 6579676 TGGAGAAGTCACATTGAAGG 59 NA Drosophila melanogaster 50 CG15894 FBgn0029864 FBtr0112955 2 1 2 215 X 6215017 6215856 AATGTATTCGAGCAGGTCG 59 6217754 6217772 GTAACTCTGGTGGTCATCG 59 NA DesignRelaxed Drosophila melanogaster 50 Act5C FBgn0000042 FBtr0100663,FBtr0100662,FBtr0070823,FBtr0070822 1 4 4 111 X 5797605 5797623 AGGATCTGTATGCCAACAC 59 5797698 5797716 TTGATCTTCATGGTCGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL35 FBgn0029785 FBtr0070800,FBtr0070801 3 2 2 113 X 5567096 5567114 GCTCAAGAATGAGTTGCTC 58 5567273 5567291 ATCACAATGTAGACGCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4119 FBgn0028474 FBtr0070799 2 1 1 97 X 5560824 5561254 GAATTTGACGGACCTATTGC 59 5561314 5561332 TTCTTGGCATCTACCTTGG 59 NA Drosophila melanogaster 50 CG6789 FBgn0029745 FBtr0070741 2 1 1 60 X 5026562 5026582 CCGATGCAAATACAGATACAG 58 5026603 5026622 AATGTCTGTATACCCGACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ptp4E FBgn0004368 FBtr0070725,FBtr0070724 1 2 2 81 X 4844919 4845001 GCAGTTGGAGGATTTAAGC 58 4845046 4845064 AACCTCGAAACGATACTGG 59 NA Drosophila melanogaster 50 CG6986 FBgn0029723 FBtr0100551,FBtr0100552,FBtr0070714,FBtr0070713 2 4 4 92 X 4619145 4619163 CCAGCACTATGACTATCCC 58 4619218 4620278 GAGATGTAACCGAAACTGTC 58 NA Drosophila melanogaster 50 rb FBgn0003210 FBtr0070702 2 1 1 180 X 4432738 4432821 GTCCAATCATGACGAACAC 58 4432576 4432594 CACCTTCTCGTTGTATTCG 58 NA Drosophila melanogaster 50 fd3F FBgn0061173 FBtr0070602 3 1 1 93 X 3704128 3704146 GGTCAACTCTATCATCAGC 57 3704284 3704302 GACACTTTCCGTAACAACC 58 NA DesignNoJunction Drosophila melanogaster 50 CG16781 FBgn0029661 FBtr0070530 2 1 1 60 X 3357391 3357412 GAATAAAGTCATCCTGCTAGTG 58 3357352 3357370 CCGGAATAGGATCAATCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ng1 FBgn0002933 FBtr0070523 1 1 1 134 X 3136704 3136722 TGTCACTCACTATAAGCGA 57 3136820 3136838 GGAGTGGATTTCCTATTGG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG3526 FBgn0040355 FBtr0070546,FBtr0113325 2 2 2 60 X 2787337 2787357 CAATAGGATGACCTTCTATCG 57 2787379 2787397 GGAGCAAAGATCATAGTCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 w FBgn0003996 FBtr0070490 1 1 1 80 X 2685364 2685454 CGATAAATGTGTTCACCTCAG 59 2685304 2685322 GAAAGTATGTGTCACAGCG 58 NA Drosophila melanogaster 50 Tsp3A FBgn0040334 FBtr0070445 3 1 1 216 X 2512911 2512929 CTCAGTAATTCGGGCTACC 59 2512606 2512624 GAACGATTTCTATGCAGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14047 FBgn0040390 FBtr0070465,FBtr0070464 3 2 2 206 X 2262912 2262932 CTTTATAAAGCGTCGCAACTC 59 2262667 2262744 GATGGCTTGTCGTTATCCT 59 NA DesignRelaxed Drosophila melanogaster 50 CG14803 FBgn0023513 FBtr0070310 2 1 1 61 X 1763892 1763910 CAAGTCACTCCACTTCCAG 59 1763999 1764018 AATAGAGTTCGTGGTATGCC 59 NA DesignNoJunction Drosophila melanogaster 50 l(1)G0431 FBgn0028274 FBtr0070297 3 1 1 90 X 1356601 1356687 CTTATGGATACAATCGCGGT 59 1356530 1356550 CCATTGACGTAGTCTTTAAGC 59 NA Drosophila melanogaster 50 CG3713 FBgn0040343 FBtr0070195 1 1 1 62 X 740979 740997 TGACCTTTGAACTCATCCG 59 740935 740953 CTTCGAAGCTATCATCGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3156 FBgn0023536 FBtr0070079 3 1 1 109 X 384246 384338 CAGGGCTCTAATTAAGAACC 57 384408 384428 CCTGGATAAGATTGTCTAAGG 57 NA Drosophila melanogaster 50 CG41568 FBgn0085697 FBtr0114146 1 1 1 60 U 5846132 5846153 GGCATACGAAGATAATTACCTG 58 5846255 5846274 TTCACACTCGTCGTAAAGAG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG41566 FBgn0085696 FBtr0114145 3 1 1 85 U 5810696 5810715 TGGTCTCTGATAGTGAAGAG 57 5810762 5810781 TTATTAGAGGCATAGGCTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41559 FBgn0085690 FBtr0114139 1 1 1 70 U 4512680 4512698 TGTTAAGAACCCACTCGAG 58 4512628 4512646 AGAACTTGTCATCAACCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41429 FBgn0085648 FBtr0114092 3 1 1 64 U 2235770 2235790 CACTTAGGTAGGTTTGAAAGC 58 2235726 2235744 TTCTTCACCAGCTGTTCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41492 FBgn0085653 FBtr0114097 3 1 1 60 U 1628547 1628568 CCCAGTAGTTACTTTACAACAG 58 1628588 1628607 TGCTAGTTTAAAGACACCGT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41041 FBgn0069966 FBtr0114295 3 1 1 72 U 403048 403066 GTATGGGACAACTCTTCCA 58 402994 403012 CTTCTGTTAACTCAGGGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mitf FBgn0067895 FBtr0100347,FBtr0100348 2 2 2 80 4 1224348 1224367 CTCGTTACAGTCTACCTCAG 58 1224410 1225001 TCGAATGATGGTAGCTCAG 58 NA Drosophila melanogaster 50 sv FBgn0005561 FBtr0089328 3 1 7 198 4 1128890 1128908 CGTCTATGCTTTACGACAG 58 1131505 1131923 TAGGACGAATTTATCAAGCC 57 NA Drosophila melanogaster 50 Crk FBgn0024811 FBtr0089114 3 1 3 170 4 231301 232282 TGATCAAATCGTTTACCGC 58 232416 232493 AAATCATCTTGATCGCTGC 58 NA DesignRelaxed Drosophila melanogaster 50 snoRNA:Psi28S-2562 FBgn0082986 FBtr0113585 3 1 1 107 3R 16648655 16648673 ATCTGATATCGTGGTTGGG 58 16648743 16648762 CAAAGTGTGAGGAAATACCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ferrochelatase FBgn0024891 FBtr0085849,FBtr0085851 3 2 3 97 3R 27636789 27636807 GTCAGACGAATCCCTACAG 59 27636651 27636730 CTTAACATAGCCCTTAATGGC 58 NA Drosophila melanogaster 50 CG2218 FBgn0039767 FBtr0085627 3 1 1 87 3R 26253065 26253084 TGAGGAAAGTTCAGATGTGG 59 26252997 26253015 CTTATCTCGCTCCAGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634 1 4 5 103 3R 26212311 26213196 AGATTTCAAGTGCTCCCTG 59 26212226 26212244 TGATCTCCTCCTGGATCTG 59 NA Nonspecific Drosophila melanogaster 50 CG15526 FBgn0039744 FBtr0085562 2 1 1 67 3R 25882149 25882168 ATATCCATTGAGCTCATCGG 59 25882197 25882216 TTGGATGTTTCCAAGATCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alph FBgn0086361 FBtr0085446,FBtr0085442,FBtr0085445 3 3 5 167 3R 25422971 25422990 GAGTCTAGCAAGATAACCGA 58 25423191 25423900 CTAATGCGTTGGACTTTCAC 59 NA Drosophila melanogaster 50 Dr FBgn0000492 FBtr0085441 3 1 1 68 3R 25390060 25390078 AAGATCTGGTTCCAGAACC 58 25390109 25390128 CTTGATCTTCTCGATCTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2014 FBgn0039669 FBtr0085440 1 1 1 88 3R 25341763 25341781 TGGATGACCTGCTAAACTG 59 25341833 25341851 AATGTGCATCATTTCGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Trc8 FBgn0039668 FBtr0085430,FBtr0085432,FBtr0085429 2 3 4 97 3R 25327494 25327512 TGTCCAACTTTGGACTGTC 59 25327201 25327434 TTGGATTAGTCTGATGGTCC 58 NA Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0085324 1 1 8 140 3R 24638553 24638691 CAGATAGAGGATGACGCTG 59 24638793 24638813 CAGGGAGTCTACATTGTACTC 59 NA Drosophila melanogaster 50 CG4884 FBgn0039565 FBtr0085264 3 1 1 86 3R 23783412 23783430 CGTCAATGGAAAGAAGCTG 59 23783292 23783310 TTCGATTGACTAAAGCCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG34353 FBgn0085382 FBtr0112563 1 1 1 106 3R 23607342 23613061 CAGCCTGAGGTAATTTGGT 59 23607254 23607273 TGCACTTTGCGTATAATCAG 58 NA Drosophila melanogaster 50 CG12880 FBgn0046258 FBtr0085217 1 1 1 158 3R 23515703 23515721 TGGACTCAACAAGAAGCTG 59 23516390 23516409 TAGTAGTGCATATTTGGCGG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Mtl FBgn0039532 FBtr0085191,FBtr0085192,FBtr0085193 3 3 3 140 3R 23464015 23464106 ATCATTCTAGTTGGCACCA 58 23464210 23464228 CTCCATGTATTTCACAGCG 58 NA Nonspecific Drosophila melanogaster 50 CG6295 FBgn0039471 FBtr0085077 1 1 1 60 3R 22832476 22832494 ACCTTCTACCTGTACACCA 59 22832434 22832452 CTGACGTAGCCTTGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18472 FBgn0039463 FBtr0085068 3 1 1 120 3R 22774381 22774455 TGCTGAAAGACATCGACTG 59 22774539 22774557 ATTGTAAGCGTGTACTGCA 59 NA Drosophila melanogaster 50 ro FBgn0003267 FBtr0085090,FBtr0085091 2 2 2 146 3R 22703382 22703400 GAGTACATCTCCAGGAGTC 58 22702882 22703273 GACAAAGTTTCTGTAGTGCT 58 NA Drosophila melanogaster 50 LpR1 FBgn0066101 FBtr0113480,FBtr0084925 2 2 6 156 3R 21575101 21577791 CTATAAATGAGGCCACTTGC 58 21573920 21573938 TATTCATCCGGTGAACAGG 59 NA Drosophila melanogaster 50 CG31120 FBgn0051120 FBtr0089440 2 1 2 80 3R 20740278 20740297 ATTGTCTCTGTCCTGAATCC 59 20740156 20740237 CTCAATGTAAGTCTTCACAGC 58 NA Drosophila melanogaster 50 CG13636 FBgn0039232 FBtr0084701,FBtr0084702 2 2 2 98 3R 20665204 20665345 CAGTGGAGCTAATCTTCAGG 59 20665405 20665424 TAGAAATGCTTTCGCATGTG 59 NA Drosophila melanogaster 50 CG31357 FBgn0051357 FBtr0084735 3 1 1 64 3R 20655319 20655337 CATCAATGATGAGCTGAGC 58 20655273 20655291 TAATGCCCTTTAGGTGGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slo FBgn0003429 FBtr0100631 1 1 17 172 3R 20520805 20520823 CTTCATAGCACAAAGTGCC 59 20525142 20528754 GAGTGATATCACTTGCACG 58 NA Drosophila melanogaster 50 CG6356 FBgn0039178 FBtr0084601 3 1 1 81 3R 20112884 20112965 CTGAACTGCTACCTGATGAG 59 20113007 20113027 TGAAGAGAATCTTGTAGACGC 59 NA Drosophila melanogaster 50 Rox8 FBgn0005649 FBtr0084592,FBtr0084591,FBtr0084593,FBtr0084594 3 4 4 84 3R 19871216 19871235 ATATTCCAACTACCAGGCAG 59 19870980 19871169 CCAGTTGACCTTGATTTCC 58 NA Drosophila melanogaster 50 CG10208 FBgn0039118 FBtr0084461 3 1 1 70 3R 19599016 19599034 TATTTCTGCAAGGCAAGTC 58 19598964 19598982 ACCAGAAGATTCATGTCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 orb FBgn0004882 FBtr0084385,FBtr0084384,FBtr0100227 3 3 5 167 3R 19094013 19094120 TTCACCTTTAGTCAGCGAC 59 19093864 19093882 TTTGCCAAACTAAGTCCCA 59 NA Drosophila melanogaster 50 CG6439 FBgn0038922 FBtr0084190 3 1 1 157 3R 17843782 17843800 GACTTCGAGTGCTACTTCC 59 17843586 17843605 TTCATGTTAAGGGTCTGCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG3301 FBgn0038878 FBtr0084101 3 1 2 155 3R 17100302 17101107 GTGACCAAATACCATTGCA 58 17100104 17100123 TCAATCCTCTATTCTCAGCT 57 NA InUTR Drosophila melanogaster 50 SNF4Agamma FBgn0025803 FBtr0110938,FBtr0110939,FBtr0084021,FBtr0084022 3 4 12 131 3R 17027123 17027417 TATATGGTAGCATGCGTCG 59 17027512 17027530 AATACTGATGGTCCGTCTG 58 NA Drosophila melanogaster 50 slmb FBgn0023423 FBtr0084032 2 1 1 83 3R 16946807 16946825 TCAAGGTTTGGGATTTGGT 59 16946682 16946760 CAGTATGTTCCACAAGGGT 59 NA Drosophila melanogaster 50 CG6231 FBgn0038720 FBtr0083810,FBtr0083809,FBtr0083807,FBtr0083808 3 4 4 101 3R 15444733 15444815 GTATCGATGCATTACTTTACGC 59 15444653 15444674 CTCACCGATCTCCTTATATGTC 59 NA Drosophila melanogaster 50 CG7333 FBgn0038715 FBtr0114553 3 1 1 88 3R 15427578 15427656 GTGAAGTCAGTCATTATAACCC 58 15427704 15427723 AAGGAGAAGAGCTTAAAGGG 59 NA Drosophila melanogaster 50 CG31404 FBgn0051404 FBtr0083774 3 1 1 60 3R 15201060 15201078 CTCTTCGCAAAGATAACGC 59 15201018 15201036 TAGGTGAATATACCCGTGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5558 FBgn0038684 FBtr0083748 1 1 2 190 3R 14986898 14987091 CCAAAGAAAGAACACTTGGC 59 14986727 14986745 CAGTAGTTGGACCACTTGG 59 NA Nonspecific Drosophila melanogaster 50 CG7718 FBgn0038649 FBtr0083682 2 1 1 60 3R 14570306 14570324 GAGTTTCTACGAGAGCCTG 59 14570264 14570283 GTACTCGAAGAAGTTAACGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fru FBgn0004652 FBtr0083650 1 1 13 101 3R 14303853 14303874 GAAAGATACAGATACTTTGCCC 58 14261500 14303791 GTCAGTGTTGTACCTTGTC 57 NA InUTR Drosophila melanogaster 50 CG10864 FBgn0038621 FBtr0083654 1 1 1 60 3R 14236562 14236580 ATTCACCGTGATCTATGCC 59 14236520 14236539 CATGTTGAGGAAGTACAGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7175 FBgn0038584 FBtr0083609 1 1 1 180 3R 14047870 14047940 GTTCGCTAAATTTGCCAGAG 59 14047709 14047727 TTTGCTGCGTAAGTACTCC 59 NA Drosophila melanogaster 50 tinc FBgn0038554 FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769 2 4 4 113 3R 13691908 13692611 CTTCCTAGCAGCTCTTGTC 59 13692688 13692706 TAAGTGCTGTCCAATGGAG 59 NA Drosophila melanogaster 50 CG18213 FBgn0038470 FBtr0083429 3 1 1 89 3R 12865224 12865309 ATAACCAGAATACGACCGC 59 12865153 12865171 GCGAGATTATCGTTCCCTC 59 NA Drosophila melanogaster 50 Glut3 FBgn0015230 FBtr0083340 3 1 1 60 3R 12615009 12615027 CTCAATATGCTGGATTGCC 58 12615048 12615069 ATCCCAGACATAAGATCAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9597 FBgn0038371 FBtr0083190 1 1 1 60 3R 11664156 11664174 TTTCAGAGGGAACTTCCAG 58 11664114 11664135 CGTCACTAAACTCAATCATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6236 FBgn0038318 FBtr0083121,FBtr0083122 1 2 2 82 3R 11151702 11151721 GCCCAAAGTATTGTAAATGC 57 11151562 11151657 TTTACACGGTGAATCTCCA 58 NA Drosophila melanogaster 50 Hsc70-4 FBgn0001219 FBtr0083060,FBtr0083059,FBtr0083058,FBtr0083057,FBtr0083055,FBtr0083056 1 6 6 61 3R 11071531 11071549 GGTATCCTCAACGTGACTG 59 11071571 11071592 GTAATGGTGATCTTGTTCTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7362 FBgn0038258 FBtr0083015 2 1 1 209 3R 10577777 10577795 TCCTGCGATATTGTACTCG 58 10575272 10577605 AGTACTGAAAGTGTATGCCT 58 NA DesignRelaxed Drosophila melanogaster 50 mRpL11 FBgn0038234 FBtr0082953 3 1 1 80 3R 10338115 10338193 TTACCATGCAGCAAATGTG 59 10338237 10338255 CCGGATCTATTTCCCTGAC 59 NA Nonspecific Drosophila melanogaster 50 140up FBgn0010340 FBtr0082909 3 1 1 100 3R 9950700 9950719 AATTCACAGTCAACTTTGCC 59 9950557 9950575 GTACACCGACATACAAGTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG8790 FBgn0027610 FBtr0082747,FBtr0082748 2 2 2 159 3R 9193735 9193754 AAGAAGTACGTCAATACGGA 58 9193875 9193984 CATTATTGTAGTTGCGTCGT 58 NA Drosophila melanogaster 50 CG8790 FBgn0027610 FBtr0082747,FBtr0082748 3 2 2 159 3R 9193736 9193754 AGAAGTACGTCAATACGGA 57 9193877 9193985 GCATTATTGTAGTTGCGTC 57 NA Drosophila melanogaster 50 CG31345 FBgn0051345 FBtr0082689 3 1 1 91 3R 8637672 8637691 ATCGATGAAATGTTCTCCAG 57 8637368 8637446 TTATTCATAGGAGGACGCA 57 NA Drosophila melanogaster 50 Past1 FBgn0016693 FBtr0082655,FBtr0082654 2 2 2 75 3R 8529481 8529499 CAGATGGCATCTTCAATGG 58 8529601 8529619 TTGATGAGTTCCTGCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG6753 FBgn0038070 FBtr0082669 1 1 1 159 3R 8467361 8467379 GAAGGACGGATATGTGCTC 59 8466963 8466981 AAGGAGGTAGGCTAAGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Hsp70Bbb FBgn0051354 FBtr0082636 2 1 1 201 3R 8329024 8329042 AGAATCTCAAGGATGAGCG 59 8329206 8329225 AGATCCTTCTTGTACTTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Scgbeta FBgn0038042 FBtr0082596 2 1 1 128 3R 8247116 8247134 AGTACAAGATTTGCGTGTG 58 8247006 8247024 CTTAGTTGATCTCGCAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cyp9f2 FBgn0038037 FBtr0082599,FBtr0082598 2 2 2 89 3R 8229402 8229420 AGCCATTCACATACTTCCC 59 8229274 8229293 AGTAGATAACAGCCTTTGCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG3532 FBgn0037979 FBtr0113224 1 1 1 90 3R 7840084 7840102 GTTCCCGTGCTAAATACCA 59 7840154 7840237 CATCTGCAGAAACTTTCTGTC 59 NA Drosophila melanogaster 50 mus309 FBgn0002906 FBtr0082434 2 1 1 102 3R 7564855 7564937 CTTCCCTAGATATCTGTGCA 58 7564772 7564790 AATTTGACCATAGGTGGCT 58 NA Drosophila melanogaster 50 PGRP-LB FBgn0037906 FBtr0082398,FBtr0082396,FBtr0082397 3 3 3 202 3R 7279014 7279184 AGATTGGAGAACCGAACTG 59 7278830 7278848 CTTCGGTGTCGTTTATGTG 58 NA DesignRelaxed Drosophila melanogaster 50 CG6723 FBgn0037895 FBtr0082405 3 1 1 102 3R 7243953 7243971 GACCTAAACATCACCTCCA 58 7243697 7243832 GATAGGCCACATTCATAATGG 58 NA Drosophila melanogaster 50 CG4683 FBgn0037857 FBtr0082326 2 1 1 80 3R 6776476 6776494 GATCCTGGTAGTGTATCCA 57 6776538 6776610 TGTCATCTTCGATATTGCG 57 NA Drosophila melanogaster 50 CG11870 FBgn0037804 FBtr0090031,FBtr0090030,FBtr0090033,FBtr0090032 2 4 4 95 3R 6117481 6117566 CCACATCTACGAAGTATTTGAG 58 6117620 6117640 TTCCTTTCAGACAGATAGTCG 59 NA Drosophila melanogaster 50 CG34107 FBgn0083943 FBtr0110787 1 1 1 60 3R 6050977 6050996 CAATGCCTATACCATACCCA 58 6051017 6051037 GACTTCATTGGAGAAACTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Invadolysin FBgn0086359 FBtr0082181 2 1 1 81 3R 5983496 5983577 CAGAGAATAATCCCAGGCC 59 5983622 5983640 GATTCGCTGTGATCAAAGC 59 NA Drosophila melanogaster 50 CG6241 FBgn0037792 FBtr0082185 2 1 1 122 3R 5969281 5969302 GCATCATCTACAACCATAAGAC 58 5968647 5969199 CTAGATTGCGCTTAGTTCTG 58 NA Drosophila melanogaster 50 Fst FBgn0037724 FBtr0082101 1 1 1 62 3R 5471123 5471141 GAAGAATCCACCACAGAGG 59 5471079 5471097 ACTTGTGGATTCTACAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ps FBgn0026188 FBtr0082038,FBtr0111031,FBtr0111029,FBtr0111030,FBtr0082037,FBtr0111028,FBtr0111027 2 7 9 133 3R 5269786 5270772 CATATTCATCATGGCGAGAC 58 5270868 5270886 GACATCTTGACCCTAGCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG8007 FBgn0037600 FBtr0081877 3 1 2 139 3R 4448126 4448213 CCGATTCCAGCATAAAGGA 59 4448316 4448334 AAATTCGGATTTGGTGGGT 59 NA Nonspecific Drosophila melanogaster 50 CG7352 FBgn0037581 FBtr0081842 1 1 1 60 3R 4173831 4173851 GATATAGCCGAGAATTTGGAG 58 4173870 4173891 CTTCCAATTTGATGTCTAGCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst84Dc FBgn0004174 FBtr0081587 3 1 2 84 3R 3190327 3190345 TTTGGCTTCTAAAGACCGT 59 3190204 3190222 ACCACAGCAGTAATATCCG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 rn FBgn0003263 FBtr0081593 3 1 2 151 3R 3121509 3121527 CATGCCAAAGACATAAGCG 59 3118151 3120142 AGAAAGTGACCTTTCTGCA 59 NA Drosophila melanogaster 50 CG1988 FBgn0037464 FBtr0081632 2 1 2 107 3R 2888851 2888870 AATAGAAGCCATCAAACGAG 57 2889017 2889036 CACTGTCTCTTTAATTCGCA 58 NA DesignNoJunction Drosophila melanogaster 50 Osi12 FBgn0037419 FBtr0078602 3 1 1 67 3R 2107168 2107186 AGATGATGGGCATGATTCC 59 2107217 2107235 GATAATCAGTGCCTTGCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31548 FBgn0051548 FBtr0078736 3 1 1 81 3R 1462155 1462173 TACCACCTTACTATGCTGG 58 1462092 1462110 GAATCCCATTGACACTGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12746 FBgn0037341 FBtr0078690,FBtr0078692,FBtr0078689,FBtr0078691 1 4 4 80 3R 1392111 1392200 TTACCTTCTTCAAGTTGGAGAC 59 1392240 1392259 TTGGGTTCTTGTATAGCCAC 59 NA Drosophila melanogaster 50 CG31538 FBgn0051538 FBtr0078819 3 1 1 61 3R 1102672 1102690 GGAAGCATCCAAAGAACCT 59 1102629 1102647 GCTACTGGTACTGCTATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 corto FBgn0010313 FBtr0078844 3 1 1 82 3R 911780 911798 TCTGTGTTACCGAAACGAG 59 911716 911734 TCGTAGTTGGCATAACAGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG31531 FBgn0051531 FBtr0078862,FBtr0078863,FBtr0078864 2 3 3 82 3R 526032 526883 GACAATAACAGTGTTATGAGCG 59 526926 526944 GTTACTCCAGCAGCTACAG 59 NA Drosophila melanogaster 50 CG1103 FBgn0037235 FBtr0078909,FBtr0111220 1 2 2 60 3R 164766 164786 TGTATACCTTTGTTCGGACAG 59 164808 164826 GTAGTAAGTAGCCAGAGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cpx FBgn0041605 FBtr0113342 2 1 15 115 3R 110115 113798 AAGTGCCGTTAAAGATGCT 59 114828 114847 CGTAATCAAACGATTACGCA 59 NA InUTR Drosophila melanogaster 50 SPoCk FBgn0052451 FBtr0078532 1 1 4 154 3L 22768457 22770214 TTCATTGAGGAACAGACGG 59 22770332 22770350 ATCTTGGCACGATACTTGG 59 NA Drosophila melanogaster 50 Ten-m FBgn0004449 FBtr0112842 2 1 2 80 3L 22298859 22300659 GCCAATAATGGAGGTAAGG 57 22298797 22298816 CATCATCAGATCCGATTCAG 57 NA Drosophila melanogaster 50 CG14562 FBgn0037142 FBtr0078472 3 1 1 161 3L 21939204 21939899 GGATTTCTCAATACGTTCAAGC 59 21940020 21940039 TAGATCAGACCCGATAGCTC 59 NA Drosophila melanogaster 50 CG14563 FBgn0037139 FBtr0078444 3 1 1 69 3L 21835355 21835374 AGCCAATACTACGGTTATCC 58 21835305 21835323 ATATGTTCCCGTATCCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12972 FBgn0037076 FBtr0078403 2 1 1 60 3L 21339141 21339159 ATGAGCGTAACATCCTGAC 59 21339099 21339117 GTCTCGTCATAGTAACGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4786 FBgn0037012 FBtr0078213 2 1 1 81 3L 20522850 20532010 CTACAATCGTGTGCTATGC 58 20522787 20522805 GAAAGTCATTCTCACACGG 58 NA Drosophila melanogaster 50 CG6680 FBgn0036968 FBtr0074842,FBtr0074841 3 2 2 166 3L 20311901 20311977 GCTCATTTCTGAACATCACC 59 20312106 20312124 GATCTGGATCACCGAATCC 59 NA Drosophila melanogaster 50 polo FBgn0003124 FBtr0100318,FBtr0074839 3 2 2 142 3L 20305704 20305789 CTGTGCAGCTAAACTTCTC 58 20305894 20305913 GTACAAGTCTTTAGACACGC 58 NA Drosophila melanogaster 50 CG14100 FBgn0036889 FBtr0074971 2 1 1 60 3L 19582410 19582428 TTGGAGGTAAGGGAAAGTG 58 19582368 19582386 ACATTCAAGCTATCGATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pip FBgn0003089 FBtr0075012 2 1 11 61 3L 19306259 19306278 AATATCTGAAGAGCACTGGC 59 19305246 19305264 AGGAGTGTTGTTTAGCTGG 59 NA DesignNoJunction Drosophila melanogaster 50 GNBP2 FBgn0040322 FBtr0075094,FBtr0075095,FBtr0075096 1 3 4 133 3L 18667368 18667387 CTATAGCATCAAGCCTCCAG 59 18667190 18667272 GTTGGAGCATCAGATAGGG 59 NA Drosophila melanogaster 50 tap FBgn0015550 FBtr0075216 1 1 1 60 3L 17353489 17353507 GCACAACTACATCTTTGCC 59 17353530 17353549 ATCCAGGTTGATTGAACCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14060 FBgn0036683 FBtr0113178 3 1 1 244 3L 16976727 16976745 AGCCTGTATGAATCCTCTC 58 16976952 16978344 TCCCTTACAACAATGAACTG 57 NA DesignRelaxed Drosophila melanogaster 50 Nc73EF FBgn0010352 FBtr0112860,FBtr0075265,FBtr0075263,FBtr0075266,FBtr0075267,FBtr0075264,FBtr0075268,FBtr0075269 2 8 8 121 3L 16956903 16956980 GATTCACAAGGGTCTATTGC 58 16957064 16957082 CATGGATTCCCTCCTTCAG 59 NA Drosophila melanogaster 50 Rpn12 FBgn0028693 FBtr0075308 3 1 1 60 3L 16576662 16576682 CGCTACAACAAGATCTTTCAG 59 16576701 16576722 TAAAGTAGCTATACACCTCGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Smn FBgn0036641 FBtr0075395 2 1 1 67 3L 16573668 16573687 ACATGTCCGGCTATTATACG 59 16573620 16573638 TTTCTTTCCGCTAGTGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13056 FBgn0040794 FBtr0075376 3 1 1 61 3L 16326692 16326710 GTTCCGAGGACTACATCAC 59 16326733 16326753 GTGGGATAGTTCAGATAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5161 FBgn0036573 FBtr0075491 2 1 1 60 3L 16124314 16124333 TTAACGAGATGTATGACACG 57 16124273 16124291 GTGTTGATGCGATAGAAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 comm3 FBgn0053209 FBtr0075589 3 1 1 60 3L 15606656 15606677 GCAGATCTCATTCAATAACTCG 59 15606617 15606635 TCTCAGCAGATGATTCCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16979 FBgn0036512 FBtr0075563 3 1 1 60 3L 15569940 15569958 AGCTTCAACATTGAGTCCA 59 15569982 15570000 GGAATCTGTGTTGGATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13463 FBgn0036470 FBtr0075631 3 1 1 60 3L 15048202 15048221 CCATCAATGGTCAGATTGTC 58 15048244 15048262 GAAATCTCGTGGGATTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32133 FBgn0052133 FBtr0075784 2 1 1 82 3L 14015211 14015290 TCATCTGCTAACTGCTTGG 59 14015147 14015165 AAGGATCGGATAAGTGTCG 58 NA Drosophila melanogaster 50 CG10083 FBgn0036372 FBtr0075819 1 1 1 92 3L 13478009 13478027 GAATTGATTGGCTCTCGTG 58 13477873 13477956 CGGTTGCGTATTTAGTTTAGAC 59 NA Drosophila melanogaster 50 CG11262 FBgn0036329 FBtr0075872 3 1 1 60 3L 12989345 12989365 GATGTACTCAAATATCGGTGG 58 12989387 12989405 AATGATCACATTGGGTGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 GRHRII FBgn0036278 FBtr0075989 1 1 1 158 3L 12340423 12340441 CTACCTGAGCACCTATGTC 58 12335701 12340301 AAGATGAAGAACTGTGGCA 59 NA Drosophila melanogaster 50 Sema-5c FBgn0028679 FBtr0076052 2 1 1 97 3L 12064288 12064696 GTCCAATAAGCGTTTCCTC 58 12064209 12064227 AATATACAAAGTGGCCAGC 57 NA Drosophila melanogaster 50 CG6938 FBgn0036235 FBtr0076047 2 1 1 81 3L 11980649 11980667 CAAACACTTCTGGAGGGAG 59 11980709 11980801 GATCCTTGACAATAAACTGCTC 59 NA Drosophila melanogaster 50 CG5946 FBgn0036211 FBtr0076079,FBtr0076078 1 2 4 106 3L 11811263 11811281 AAGGACATTCTACTGCGTG 59 11810404 11811193 CTATACTGCCAACCTTCGT 59 NA Drosophila melanogaster 50 Gr68a FBgn0041231 FBtr0076118 1 1 1 60 3L 11745417 11745436 GCATCAAACAGGATCTTCAG 58 11745458 11745477 AGTGTTGAGTTGTCTATGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32087 FBgn0052087 FBtr0076117 3 1 1 61 3L 11726169 11726187 AATCAAGGCCACCATACAG 59 11726212 11726230 TATCGACTAGACTCTCGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mocs1 FBgn0036122 FBtr0076206,FBtr0076205,FBtr0076204 2 3 3 110 3L 11064199 11064217 ATTTCTCTAACCGAACGCT 58 11064720 11064738 TAGACGAAGGATTTCCTCG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Aps FBgn0036111 FBtr0076250,FBtr0076251,FBtr0076252 2 3 3 81 3L 10889924 10889943 ACGACAAGGATGGATTTAGG 59 10889708 10889881 GAGGTTACCAAGAGTACCTC 58 NA Drosophila melanogaster 50 CG32066 FBgn0052066 FBtr0076278,FBtr0076277 2 2 2 187 3L 10640104 10640122 CTACGAGCATTCCATGGAG 59 10634867 10634885 AATCATTCTGTATGGCGGG 59 NA DesignNoJunction Drosophila melanogaster 50 dpr10 FBgn0052057 FBtr0076310,FBtr0076308,FBtr0076309 2 3 3 83 3L 10143594 10144087 CATCAGGATAAGGTGCTCAG 59 10143530 10143548 AATGGATTTGGTCTCCTCC 58 NA Drosophila melanogaster 50 CG6685 FBgn0036062 FBtr0076355 1 1 1 86 3L 9960873 9960944 ATTGACTTGAATGAGGCCT 58 9960805 9960823 AAATTCTTTGGTCGCATCG 59 NA Drosophila melanogaster 50 CG33205 FBgn0053205 FBtr0076336,FBtr0076334,FBtr0076332,FBtr0100386,FBtr0076331,FBtr0076333,FBtr0076335,FBtr0100385 2 8 8 112 3L 9825956 9826035 GAGTTAACCGGGACTACAC 59 9826111 9826129 TCTTTCCCAAACTTAGCCG 59 NA InUTR Drosophila melanogaster 50 CG12525 FBgn0036010 FBtr0076422 1 1 1 60 3L 9536087 9536106 ATGATTTCGGGAATTATGGG 57 9536046 9536065 TCGAACTGATTGTATTCCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF-4E FBgn0015218 FBtr0076493,FBtr0076491,FBtr0076489,FBtr0076490,FBtr0076492,FBtr0076488,FBtr0076487 1 7 7 92 3L 9393610 9393692 AGAACATTCGTCCCATGTG 59 9393536 9393554 TATCCAGATCGGTCTTGGA 59 NA Drosophila melanogaster 50 Tequila FBgn0023479 FBtr0076526,FBtr0076525,FBtr0076528 3 3 4 102 3L 9082959 9082977 GCAAAGATGAGGCTAACTG 58 9083042 9083131 CATTGACCATTAGCCTTGAC 58 NA Drosophila melanogaster 50 CG6282 FBgn0035914 FBtr0076636,FBtr0076637 2 2 2 100 3L 8607896 8607972 GTTCTGCAATGATGGACTG 58 8608034 8608054 TGATCACATTGAGGGATATGG 59 NA Drosophila melanogaster 50 Gug FBgn0010825 FBtr0076616,FBtr0076619,FBtr0076617,FBtr0076618 1 4 4 178 3L 8461009 8461027 CATATGCCGGGATATCCAC 59 8461169 8461247 ATATCAATGGGCAATGGCT 59 NA Nonspecific Drosophila melanogaster 50 mRpL36 FBgn0042112 FBtr0076735 1 1 1 80 3L 8117978 8117996 CTGGAATCTGTCAGACGTC 59 8117916 8117934 GTCCCTTGACCTTGAATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ank2 FBgn0085445 FBtr0112696,FBtr0112701,FBtr0112699,FBtr0112695,FBtr0112694,FBtr0112702,FBtr0112698 2 7 10 84 3L 7699008 7699084 TTGAACCAGAGGAGATTGC 59 7698942 7698960 AAGTACTGAGGGAAGTCGT 59 NA Drosophila melanogaster 50 CG7492 FBgn0035807 FBtr0076821 1 1 1 205 3L 7646733 7646751 ACTTAGTGAACTGCAGTCG 59 7646486 7646564 AAGAATGTACTTCACCCGT 58 NA DesignRelaxed Drosophila melanogaster 50 CG7506 FBgn0035805 FBtr0076822 2 1 1 60 3L 7634198 7634216 CACAATATCCCTGCTTCTG 57 7634098 7634116 AACGACCACATCATTTGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32379 FBgn0052379 FBtr0076853 1 1 1 60 3L 7389952 7389970 GCTCTTACAGGACTACGAC 59 7389994 7390012 GTACTCATATCCATCCGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dbi FBgn0010387 FBtr0076915 1 1 2 70 3L 7124976 7124994 ACTGTTTAGTTCTGTGGCA 59 7125768 7126227 GTTGAATTGCTCGGAAACC 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 Trn FBgn0024921 FBtr0077002,FBtr0077000,FBtr0077001 3 3 3 118 3L 6187880 6187898 TGTCATCAGATGAGGACCA 59 6187977 6188081 CAGCATGTACTCAATAATCTGC 59 NA Drosophila melanogaster 50 CG10289 FBgn0035688 FBtr0077019 1 1 1 95 3L 6165386 6165466 TTACCTTCACAGATGAGCC 58 6165309 6165327 CAGTGATCACAGTCTCCTG 59 NA Drosophila melanogaster 50 CG10625 FBgn0035612 FBtr0113144,FBtr0077140,FBtr0077139 3 3 7 81 3L 5538118 5538137 TAATTCTCGACATTGACGAC 57 5537032 5538076 CCATACCTATAGGCATTTGTG 58 NA Drosophila melanogaster 50 CG4603 FBgn0035593 FBtr0077164 2 1 1 60 3L 5128179 5128199 ACTACTATGGCATTGAGATCG 59 5128220 5128239 CCAAAGCGATTGATAATGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dhc64C FBgn0010349 FBtr0073359 1 1 2 80 3L 4811597 4811615 CTTCGAGAAGGTTAATCGC 58 4811474 4811554 ATATCAGCGTACTCGATCTG 58 NA Drosophila melanogaster 50 CG32236 FBgn0046793 FBtr0073369 2 1 1 60 3L 4666275 4666295 GTATTATCATACCCATGGGAC 57 4666235 4666254 TGGTATAGCTGAGAAGTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32238 FBgn0052238 FBtr0073344 1 1 1 60 3L 4649895 4649916 CACATCAACTACAGTAAACGAC 59 4649935 4649955 GGACAGTATGTTGTCAATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DopEcR FBgn0035538 FBtr0100185 1 1 3 194 3L 4379583 4379935 AACAATTCTTGCCTGTTGC 59 4371891 4379425 CTAATTGTGCGCATCTGAG 58 NA Nonspecific, InUTR Drosophila melanogaster 50 RfC40 FBgn0015287 FBtr0073264 3 1 1 67 3L 4135083 4135101 GAACATATTCCGTGTCTGC 58 4135034 4135052 TCTCACGGATAAAGTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18869 FBgn0042179 FBtr0073204 1 1 1 96 3L 4060960 4060978 AATGTGGAGCAACTAGAGC 59 4061038 4061122 ACTGCATAGCCAAGATGTC 59 NA Drosophila melanogaster 50 CG12605 FBgn0035481 FBtr0073166,FBtr0073167 1 2 3 256 3L 3961756 3961774 GAACTCGCGTTCAATTCTC 59 3959843 3959861 AAATCACCTTGCCATCCTC 59 NA DesignNoJunction Drosophila melanogaster 50 dro5 FBgn0035434 FBtr0073062 3 1 1 92 3L 3316844 3316862 AAGTTCCTGTACCTCTTCC 58 3316918 3316936 TCCTCCGTATCTTCCAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jafrac2 FBgn0040308 FBtr0072982,FBtr0072983 2 2 2 92 3L 3043306 3043327 CGTGGTTAATAAGGAGATTGTG 59 3043380 3043449 ACAAAGGTGAAGTCCAGTG 59 NA Drosophila melanogaster 50 pgant6 FBgn0035375 FBtr0072972,FBtr0072973 2 2 2 148 3L 2784362 2784381 GAGAACAGTATGAGCTAAGC 57 2784492 2785004 CTTGTAGTTCTTGTGCAGG 58 NA Drosophila melanogaster 50 CG1927 FBgn0027547 FBtr0072853 2 1 1 182 3L 1967128 1967207 TGAGCAACAACATAATCCTG 58 1966965 1966983 GTGGACTACGGAAGTACAG 59 NA Drosophila melanogaster 50 mu2 FBgn0002872 FBtr0072856 2 1 2 121 3L 1945586 1945661 CAAAGTTGCATCAGATTCGA 58 1945484 1945502 GTATCGACTCCTCATTGGG 59 NA Drosophila melanogaster 50 ru FBgn0003295 FBtr0072681 2 1 1 91 3L 1384766 1384784 AAACATCATGAAGGGTCTG 57 1384838 1386228 CATAGAAACACGAGAACCTC 57 NA Drosophila melanogaster 50 snoRNA:Psi18S-841c FBgn0083017 FBtr0113522 3 1 1 110 2R 17218090 17218108 CAAATGCACTCTGTGTCAC 59 17218181 17218200 ATGTAATCACCCTGATACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9083 FBgn0035077 FBtr0114563 3 1 1 68 2R 20786124 20786143 CTATGAGATTCACTCCCACG 59 20786174 20786192 TAGGTGTTCACATGACCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pof FBgn0035047 FBtr0072327,FBtr0072328 3 2 2 91 2R 20558284 20558303 GCAATTTAGACAGAACAGCT 58 20558418 20558436 CTAGTAAACAACCTGTGGG 57 NA DesignNoJunction Drosophila melanogaster 50 CG3570 FBgn0035035 FBtr0072317 1 1 1 68 2R 20491421 20491439 GTACTTCTTTACCGAGGGC 59 20491471 20491489 CTGTAGGATTCCAGGAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 prom FBgn0050164 FBtr0072360 3 1 1 85 2R 20308343 20308873 GAGCGGAACTATACATTGGA 59 20308277 20308296 CCATTTACCGTAGAGGTCAG 59 NA Drosophila melanogaster 50 CG30419 FBgn0050419 FBtr0072275 2 1 1 77 2R 20102705 20102723 ACTACAACATGGGCTACTG 58 20102646 20102664 AGTGAGTCATCTGGAAGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13564 FBgn0034973 FBtr0072246 1 1 1 198 2R 19968524 19968543 GAAATTGCTCTGAAGATCGA 57 19968704 19968722 AATGGGATAGGTTTGTGGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 MAN1 FBgn0034962 FBtr0072166,FBtr0072167 1 2 2 60 2R 19922795 19922813 GGAAGTTCAACTATCCCAC 57 19922836 19922855 GTTAGCCTTTCTTTCCTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5549 FBgn0034911 FBtr0072125 1 1 1 90 2R 19722050 19722068 GATATTCTTCGCACTGAGC 58 19722122 19722229 AGTTCCACAATTGTAGCAG 57 NA Drosophila melanogaster 50 Pal FBgn0020623 FBtr0089502,FBtr0089501,FBtr0089500 3 3 3 161 2R 19576610 19576628 GGGAATTACTGGATCACGG 59 19576820 19576900 GATGAAGAACTCTCCGGTG 59 NA Drosophila melanogaster 50 CG13558 FBgn0034869 FBtr0072056 1 1 1 87 2R 19387288 19387306 TACGAGGAGATCTACGAGC 59 19387357 19387375 CTATATGGTACTGGCGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3520 FBgn0034859 FBtr0072027 2 1 1 80 2R 19286463 19286541 GATCTGTCAGGAGAAACCC 59 19286401 19286420 TCATCGGAGGAATGATTGAG 59 NA Drosophila melanogaster 50 ord FBgn0003009 FBtr0072047 1 1 1 137 2R 19159464 19159546 AATACACTAGCTTCGCCTC 59 19159345 19159363 CTGAAGAATGGGTTTGCAG 59 NA InUTR Drosophila melanogaster 50 Klp59C FBgn0034824 FBtr0071975 1 1 1 60 2R 19012702 19012720 CTTCCGTTTCGATTACGTC 58 19012660 19012678 TGTGAATTCGTAGACCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9895 FBgn0034810 FBtr0071986 1 1 1 106 2R 18901288 18901306 CTTCGACTCTTGGAGTCTC 59 18900669 18900687 CATTGCTATAGCCAACTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9826 FBgn0034784 FBtr0071895,FBtr0071894 2 2 2 60 2R 18728968 18728987 GGGCATATCCTATGTGTCTG 59 18729007 18729028 GAATATTAGCCAGAGGAAACAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10384 FBgn0034731 FBtr0071831 2 1 1 60 2R 18358984 18359005 GATTAGCGAATATTTCTAGGCG 59 18359024 18359044 GAGAGTACAAGTACAAGTACG 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 ppk12 FBgn0034730 FBtr0071830 2 1 1 80 2R 18316617 18316635 ACGTTTATTTCCGGGAGTC 59 18316679 18316814 CGACGTTTGACAAGAACTC 59 NA Drosophila melanogaster 50 Gr58c FBgn0041237 FBtr0071727 1 1 1 60 2R 17864579 17864597 GATTTGTGCTCCTAACCCA 59 17864620 17864639 TTACTCTCGCAATTAACCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30290 FBgn0050290 FBtr0071672 2 1 1 92 2R 17579803 17579822 ACATAGATCTAGGCAAGTGG 58 17579877 17579952 TATTATCGCAAATCCCGGT 58 NA Drosophila melanogaster 50 CG10440 FBgn0034636 FBtr0071692 3 1 1 160 2R 17449379 17449400 GCCACATTCTGAACTTTATGAG 59 17449038 17449056 CAAATAGTTGCCATTGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG30288 FBgn0050288 FBtr0113367 1 1 1 106 2R 17407683 17407703 GTCAGAGTAATGATTTCGGGA 59 17407478 17407555 CGCACATTCATATACATTGGG 59 NA Drosophila melanogaster 50 MESK2 FBgn0043070 FBtr0089710,FBtr0089703 3 2 9 181 2R 17399388 17399406 ATATCACAGGTTCGCTCTC 58 17399675 17399908 GAAGTACTTGACGTAGCCC 59 NA Drosophila melanogaster 50 CG34202 FBgn0085231 FBtr0112395 2 1 1 77 2R 16640462 16640480 TCTCCACCAATGATCTGGA 59 16640521 16640539 CGCTATTGGCCTCATACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 maf-S FBgn0034534 FBtr0086230 1 1 1 60 2R 16528702 16528721 GTCCAATTCCGGATATTACC 57 16528743 16528762 CGATTAAGATCCCTTACCGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13423 FBgn0034513 FBtr0086217 1 1 1 60 2R 16424978 16424996 CTGAATGATATGACAGCGG 58 16425020 16425038 CTAGATTCACCGTACAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8920 FBgn0027529 FBtr0086280,FBtr0086279 3 2 3 132 2R 16207405 16207423 ATCGTCGCAGATTACATGG 59 16207518 16209192 TGATGAACACCTGATTACCG 59 NA Drosophila melanogaster 50 CG11055 FBgn0034491 FBtr0086271,FBtr0086270,FBtr0086272 3 3 3 141 2R 16148062 16148142 CTTACACTTAACATGGACCC 57 16148245 16148324 CTTCGTTGGATAACATTGTG 57 NA DesignRelaxed Drosophila melanogaster 50 Elongin-C FBgn0023211 FBtr0086541,FBtr0086540 2 2 2 65 2R 15332849 15332867 AGGTCTGCATGTACTTCAC 59 15332802 15332820 GGAATTCGGGTATTTCGGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tab2 FBgn0086358 FBtr0086516 1 1 1 291 2R 15190373 15190454 CTGCTTAAATGAACCGCAG 59 15190709 15190727 TAACAGTTGCTGTTGACTC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 wbl FBgn0004003 FBtr0086510 3 1 1 71 2R 15137580 15137598 AGGACTATGGAGAACTGGA 58 15137837 15137855 TACTCGGGAAGTTCTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)03709 FBgn0010551 FBtr0112863,FBtr0086614,FBtr0112862,FBtr0086615,FBtr0112861,FBtr0086616 1 6 6 191 2R 14707870 14707888 GATGATCAACATCTCGCTG 58 14708043 14708123 ATGAGTAGGGATACCTGCT 59 NA Drosophila melanogaster 50 l(2)08717 FBgn0010651 FBtr0086634,FBtr0086635 3 2 2 129 2R 14685321 14685339 TGAACCACATCGATCTGTC 59 14685150 14685228 GTTACGCTTGTCTCATCGA 59 NA Drosophila melanogaster 50 CG15094 FBgn0034392 FBtr0086636,FBtr0086637 3 2 2 185 2R 14682504 14682584 TCTGGGATGAGACAAATCC 58 14682337 14682356 GATCCTCAGTACCTTCATCC 58 NA Drosophila melanogaster 50 Pepck FBgn0003067 FBtr0086700,FBtr0086701 2 2 2 60 2R 14426500 14426518 CGTGAAGGAGATCTTCTCG 59 14426542 14426560 GCGAATATCCTTGACCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10924 FBgn0034356 FBtr0086699,FBtr0113093 1 2 2 60 2R 14421137 14421157 GATGAAGTTCGATAACAAGGG 58 14421179 14421197 GCCAAAGAATCCATTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5756 FBgn0034301 FBtr0086785,FBtr0086786 2 2 2 138 2R 13992698 13992716 CAAGTCCAGCGAGTATACG 59 13992433 13992597 CGCGTAATAACCTTCATGTC 59 NA Drosophila melanogaster 50 PpY-55A FBgn0003140 FBtr0086817 1 1 1 60 2R 13843723 13843744 TTATTTCTCGGTGACTATGTGG 59 13843684 13843703 ATAGCAGGCAAATTGTTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 UbcD10 FBgn0026316 FBtr0089553 3 1 1 80 2R 13676393 13676414 CGCCCAAGATTAACTTTAAGAC 59 13676334 13676352 TACTGATAATGGGCAAGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15611 FBgn0034194 FBtr0086982,FBtr0086981 3 2 2 89 2R 13000829 13000848 AGCTTCTATTGCTATGTGAG 57 13000900 13000981 TTGATATGTCTGCAACCAC 57 NA Drosophila melanogaster 50 CG30461 FBgn0050461 FBtr0100249,FBtr0100251,FBtr0100250,FBtr0100252 1 4 4 60 2R 12883879 12883899 GCAGCTTATTCTCAGTAATCG 58 12883785 12883803 TTTCTTGATTCGCGAACAG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Lis-1 FBgn0015754 FBtr0087236,FBtr0087241,FBtr0087239,FBtr0087238,FBtr0087237,FBtr0087240 2 6 6 64 2R 12070571 12070592 GCTCAAATGATCAGACAATACG 59 12070617 12070702 GCGTAATTCAACCTTGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG33464 FBgn0053464 FBtr0087305 2 1 1 66 2R 11759748 11759766 AAACCGAAGATTCCTCCTC 58 11759700 11759718 TTACTGTCCTCGGTATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fus FBgn0023441 FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343 3 4 6 111 2R 11555363 11559507 CAACTGGACAGATCGTAGG 59 11555270 11555289 GTGTTATTGGTGACACTCGA 59 NA Drosophila melanogaster 50 aPKC FBgn0022131 FBtr0110996,FBtr0110997,FBtr0087426 3 3 6 101 2R 10849144 10849164 GCCAGATTATCATTACCACCA 59 10849002 10849081 TGGTAAATGGCTGATCCAG 59 NA Drosophila melanogaster 50 tra2 FBgn0003742 FBtr0089617,FBtr0089620,FBtr0089615,FBtr0089619,FBtr0089616,FBtr0089621 2 6 7 141 2R 10490376 10490678 GATTGACGCACAAACACAG 59 10490253 10490274 TTGGGTTATAGAGAAATCGACG 59 NA Drosophila melanogaster 50 CG34379 FBgn0085408 FBtr0112616,FBtr0112614,FBtr0112615 2 3 3 143 2R 10238326 10238345 CCGACGAATTTAATCAAGCA 58 10238514 10238532 TAGCTTGGCGAATAGATCC 58 NA DesignNoJunction Drosophila melanogaster 50 Ih FBgn0028428 FBtr0100372 3 1 4 87 2R 10179875 10181606 GAGGAGGTCTATATTCTGCAG 59 10181655 10181673 TTGTCAAGCCATCTTTGTC 58 NA Drosophila melanogaster 50 CG6701 FBgn0033889 FBtr0087607 1 1 1 82 2R 9864800 9864889 GAAGAAATATCCAACGCCC 58 9864736 9864755 AGGTCTTTAAGGTGAATCCA 58 NA Drosophila melanogaster 50 Cp1 FBgn0013770 FBtr0087592,FBtr0087591,FBtr0087593 1 3 3 137 2R 9849731 9849749 GAACAAATCACAATGCGCA 59 9854268 9854286 ATCCTGATAGTTCTTGCGG 59 NA DesignNoJunction Drosophila melanogaster 50 AGO1 FBgn0026611 FBtr0087613,FBtr0087612,FBtr0087614 1 3 3 102 2R 9835755 9835774 GTATCAGCTATGCCATACGT 59 9835606 9835690 CAGATGATATCTGGCACGG 59 NA Drosophila melanogaster 50 shot FBgn0013733 FBtr0087619,FBtr0087618 1 2 6 137 2R 9805406 9809060 AGTTTAAAGACGAACGCGA 59 9804646 9804667 CCAGGAGTGAAAGTAAATTGTG 59 NA Drosophila melanogaster 50 CG30485 FBgn0050485 FBtr0087640 2 1 1 60 2R 9738415 9738433 CAAGGGCACAAACTATGGA 59 9738456 9738475 CTTCTCACTACTGGTCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6280 FBgn0033866 FBtr0087628 3 1 1 183 2R 9643168 9643186 ATCGAAGGTCCAAACTTGG 59 9643454 9643472 TGTAACCATGTCCATTGGT 58 NA DesignNoJunction Drosophila melanogaster 50 drk FBgn0004638 FBtr0087693,FBtr0087697,FBtr0087698,FBtr0087696,FBtr0087694,FBtr0087695 3 6 6 92 2R 9385227 9385305 GAATCACGACTGGTATTACG 58 9385154 9385172 CTGATGCGTATCAAGAAGG 57 NA Drosophila melanogaster 50 drk FBgn0004638 FBtr0087693,FBtr0087697,FBtr0087698,FBtr0087696,FBtr0087694,FBtr0087695 3 6 6 92 2R 9385227 9385305 GAATCACGACTGGTATTACG 58 9385154 9385172 CTGATGCGTATCAAGAAGG 57 NA Drosophila melanogaster 50 CG17050 FBgn0033831 FBtr0087719 1 1 1 90 2R 9277948 9278041 CTGATGTTTCAGGCTTTGG 59 9277876 9277897 CAGAGGTATACAATTCTTCGAC 58 NA Drosophila melanogaster 50 CG4716 FBgn0033820 FBtr0087747,FBtr0087746 3 2 2 61 2R 9144352 9144373 CCATATTATCAAACGATCTGCC 59 9144393 9144413 CTTTGTCATTATGCTCCTCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4643 FBgn0043010 FBtr0087762,FBtr0087763 1 2 2 76 2R 9108969 9108987 TCGTTCGAGAAGAACTACG 59 9108848 9108866 GATACTGTGGGATAGAGCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG17574 FBgn0033777 FBtr0113077,FBtr0113078 3 2 4 160 2R 8745709 8745727 ATGATTCGGGCATCTACTG 59 8745062 8745081 CATTCTCGATAAGTCAGGGA 58 NA DesignNoJunction Drosophila melanogaster 50 Dgkepsilon FBgn0020930 FBtr0087853 2 1 1 112 2R 8646748 8646766 GTATGATGGAGGTGTTCGG 59 8646839 8646915 CTTGACTTGTAGCCTTATTTGC 59 NA Drosophila melanogaster 50 mos FBgn0033773 FBtr0087865 1 1 1 87 2R 8640072 8640090 TCATCATGGAATGTCCGAG 59 8639944 8640023 AGAGTTATTAAGACCCTGTGC 59 NA Drosophila melanogaster 50 CG8594 FBgn0033755 FBtr0087826 2 1 1 94 2R 8460032 8460052 GAATAGGAACATCAACAGCAG 59 8460108 8460210 CTTCGTAGTCCAAGCTCTC 59 NA Drosophila melanogaster 50 Dyb FBgn0033739 FBtr0100300,FBtr0100298,FBtr0113074,FBtr0087929,FBtr0087930 2 5 6 106 2R 8335509 8335527 ATCATAACCTCAACAAGCG 57 8335596 8335677 CGAGTTATCACTTGTGTACG 58 NA Drosophila melanogaster 50 CG8834 FBgn0033733 FBtr0113073,FBtr0087954 2 2 2 81 2R 8309523 8309597 GTGCTAGATGATGCAACCT 59 8309460 8309480 TATCGTACTCTTGTCCATCAC 59 NA Drosophila melanogaster 50 CG13178 FBgn0033685 FBtr0088019 3 1 1 60 2R 8031206 8031225 TGGATCAAGATTACTACGCG 59 8031165 8031186 CTCTTCGCATAGATATTATCGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30035 FBgn0050035 FBtr0088073 1 1 2 109 2R 7558674 7560228 ATTTGGACACAGGTCTTGG 59 7560301 7560319 ATATTCCGATCGGTCATCG 59 NA Drosophila melanogaster 50 CG7777 FBgn0033635 FBtr0088136,FBtr0088137 1 2 2 244 2R 7327365 7327484 CTCAATGAGCTCAAATCCA 57 7327753 7327771 ATCAAGCTAATTCGTCCTG 57 NA DesignRelaxed Drosophila melanogaster 50 CG34363 FBgn0085392 FBtr0112584,FBtr0112585 3 2 2 80 2R 6226461 6226543 GGAGAACATGTTTAATGACCTC 59 6226402 6226421 GCTGATAGAATGGTCAACTG 58 NA Drosophila melanogaster 50 KCNQ FBgn0033494 FBtr0088371,FBtr0088372 1 2 2 80 2R 6041096 6041322 ACATAGACAGGAACTGATCAC 59 6041036 6041054 TCCCACATATAGACCAGGA 58 NA Drosophila melanogaster 50 gem FBgn0050011 FBtr0089758,FBtr0089759 1 2 2 95 2R 6023164 6023252 ACATGGACGATTATAGCCAG 59 6023310 6023328 TTGAAAGATAGGCCGTGAG 59 NA Drosophila melanogaster 50 mRpL42 FBgn0033480 FBtr0088403 3 1 1 180 2R 5954332 5954351 GTTTATACGGAGGATTTCGT 57 5954494 5954512 TGAATCTCGCTGATCTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30345 FBgn0050345 FBtr0088584 3 1 1 84 2R 5037267 5037285 GCCATAGTAAGCCTCTTCC 59 5037333 5037417 AAAGGTAGCCTGTAAACGT 58 NA Drosophila melanogaster 50 alc FBgn0033383 FBtr0088624,FBtr0088625 3 2 2 72 2R 5023270 5023288 CAAGGATACACCGCTATCG 59 5023157 5023177 GTACAAGTGGTTAAGCATCAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8170 FBgn0033365 FBtr0088665 1 1 2 86 2R 4909291 4909309 CTACAGTCTGCAGGATCTG 59 4908982 4909241 GTGATGTCGACTTTCTCCT 59 NA Drosophila melanogaster 50 mXr FBgn0050361 FBtr0088755,FBtr0088754 3 2 3 118 2R 4373797 4374330 GAATCAAGGCTTTCGAGGA 59 4373697 4373717 TATATTGTCGTAGGCGATGTC 59 NA Drosophila melanogaster 50 pdm3 FBgn0033288 FBtr0114491,FBtr0088741 3 2 2 142 2R 4282117 4282546 CAGAACATGTTCGAGAAGC 58 4282747 4282766 CCGATATAGTCGGTTAGGTG 59 NA Drosophila melanogaster 50 CG8707 FBgn0033272 FBtr0088807 2 1 1 94 2R 4050208 4050291 AGGTGTTTATACACAAGGTGG 59 4050134 4050152 CTCGTTAAGGTCATCCGAC 59 NA Drosophila melanogaster 50 CG11198 FBgn0033246 FBtr0088871,FBtr0113053,FBtr0088872 2 3 4 192 2R 3872610 3872629 CAAATGAGTCCAATGACACG 59 3870501 3872392 GACATACTCGGCCTTAACC 59 NA Drosophila melanogaster 50 CG8726 FBgn0033244 FBtr0088873,FBtr0088874 1 2 2 80 2R 3858089 3858107 ACAAGTGGCTACATATGGG 59 3857970 3858045 TGTAGATGACCATATGCGT 58 NA Drosophila melanogaster 50 Dscam FBgn0033159 FBtr0089016,FBtr0111061,FBtr0089017,FBtr0089019,FBtr0111074,FBtr0089018 2 6 60 123 2R 3219877 3231794 ACAAGTTAATGTACCTCCCA 58 3219773 3219792 TTTCTTCCATGTAACTTGGG 57 NA Drosophila melanogaster 50 CG30384 FBgn0050384 FBtr0089048 3 1 1 60 2R 3072305 3072324 TTCTCTTACGCATTTCAGTC 57 3072347 3072365 CCTCACGTAGATGAACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30159 FBgn0050159 FBtr0089761,FBtr0089760 2 2 2 158 2R 2880914 2880932 TTTCCCGATCTTCACTAGC 59 2881054 2881072 CAGACAACAAAGTCCTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30156 FBgn0050156 FBtr0086184 2 1 1 80 2R 2869297 2869316 TGGAAGTAGAAATCGAGGAG 58 2869179 2869255 ACAGATTATCCCTCCAACTC 58 NA Drosophila melanogaster 50 coro FBgn0033109 FBtr0086208,FBtr0086209,FBtr0086207 1 3 3 139 2R 2752071 2752153 TCGGTATTTCGAGGTAACG 59 2751950 2751968 GATAGAACTTGGCGACCTC 59 NA Drosophila melanogaster 50 CG30438 FBgn0050438 FBtr0086068,FBtr0086069,FBtr0086070 2 3 4 97 2R 1414858 1414876 GGACATCCTAATGGCTACG 59 1416315 1426767 AGGTAATATTGTGACCTCTGG 58 NA Drosophila melanogaster 50 Atf6 FBgn0033010 FBtr0086081,FBtr0086079 3 2 3 154 2R 1036542 1036563 CAACGTATGATTAAGAACCGAG 59 1040309 1040328 AGCAGAAATATCTGATCCCG 59 NA DesignNoJunction Drosophila melanogaster 50 snRNA:U5:38ABa FBgn0043022 FBtr0081315 1 1 1 61 2L 19811993 19812012 GAGGAACACTCTAATGAGTC 57 19811951 19811972 CCCAACTAAATATTTAGCCAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1832 FBgn0032979 FBtr0085964,FBtr0100407 2 2 2 130 2L 22168219 22168237 ATACAATTACGCCCTGGTC 59 22168054 22168125 TGGATATGGTGTTAGCTGC 59 NA Drosophila melanogaster 50 tio FBgn0028979 FBtr0089377 3 1 1 60 2L 22021777 22021795 CTCCAGCTCTTCAAACTCC 59 22021816 22021837 GGGCATAGTTTCCTTAATTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ret FBgn0011829 FBtr0081496,FBtr0081494,FBtr0081493,FBtr0081492,FBtr0081495 1 5 5 88 2L 21184334 21184355 GAGCCTGTTAATGTTAAGATGG 59 21184212 21184288 CGATGAACCAACTTTAACTCAG 59 NA Drosophila melanogaster 50 mRpS18B FBgn0032849 FBtr0081339,FBtr0081338 1 2 2 77 2L 20097092 20097110 AACATTACCCGGAATAGCC 59 20097033 20097051 TTCTTCAGTCGAAGTCTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Victoria FBgn0053117 FBtr0081309 2 1 1 60 2L 19913221 19913242 TTGCCTTCTACGAGAAATACTC 59 19913182 19913203 ATACTAATCCTTTCCTGAGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 swm FBgn0002044 FBtr0081244,FBtr0081245 3 2 2 71 2L 19496862 19496971 ACTTTAAGAACTTCGGCGA 59 19497003 19497024 CGTATGAGAGTATTAACTGTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG10237 FBgn0032783 FBtr0081207,FBtr0081209,FBtr0081208 1 3 3 91 2L 19437120 19437677 GTCTTCTAGAAGCGGAGAC 59 19437047 19437065 TTCCGGGTAATACTTGCAG 59 NA Drosophila melanogaster 50 CG31793 FBgn0051793 FBtr0081138 1 1 1 80 2L 19006222 19006240 TTGTCCTGATAATGCTGTG 57 19006284 19006361 TGTTCTTAACCCAGTAGGA 57 NA Drosophila melanogaster 50 CG10639 FBgn0032729 FBtr0081186 3 1 1 169 2L 18972646 18972664 AATGGACGGATCTATCTGG 58 18972441 18972459 ATTTGGACATCTCGCTGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG31752 FBgn0051752 FBtr0081119 2 1 1 60 2L 18840040 18840059 GCATGTATCTGAACACTCTG 58 18839999 18840018 GGGACCGTAACTAGATACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Grip71 FBgn0032705 FBtr0081099 3 1 1 92 2L 18710303 18710321 TCAAAGTCTTTGTCCTCCA 58 18710377 18710450 CTTAAGGTCTGTTGCAGTG 58 NA Drosophila melanogaster 50 CadN FBgn0015609 FBtr0100316,FBtr0100313,FBtr0081020,FBtr0081016,FBtr0081013,FBtr0081015 1 6 12 101 2L 17651479 17655676 CATACTGATACTCGTCTTGGT 59 17651398 17651416 TTGATGATATTCTCGCGCA 59 NA Drosophila melanogaster 50 CG5559 FBgn0032653 FBtr0080987 3 1 1 101 2L 17602613 17602633 GTCTATAATGAGGCTCTTGCT 59 17602695 17603126 TTCACTTGATCCCAATAGGC 59 NA Drosophila melanogaster 50 BicC FBgn0000182 FBtr0080804,FBtr0080803 1 2 3 153 2L 16044465 16044798 TCCATGACATCATGAACAC 57 16044978 16044996 GAGTCAAGACTGCTAAGGA 58 NA Drosophila melanogaster 50 beat-Ic FBgn0028644 FBtr0080801 1 1 1 94 2L 16034700 16037145 TTAATGGTATTGTGGTGCC 57 16037203 16037221 ATGTATGGCACTTGTAACC 57 NA Drosophila melanogaster 50 CG18480 FBgn0028518 FBtr0080755 1 1 1 60 2L 15630510 15630529 TGATATAACCACCATTGACG 57 15630669 15630687 CGTAAGATTAAGCAGGTGG 57 NA DesignNoJunction Drosophila melanogaster 50 Pect FBgn0032482 FBtr0080440,FBtr0080442,FBtr0080441,FBtr0080439 2 4 4 132 2L 13209724 13209743 AGAAACTGGGTGACTATCTG 58 13209838 13209921 TCATTGACAAACTTGCAGG 58 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020 1 17 17 86 2L 12723994 12724013 AGACCTATCAGATCAGACAG 57 12724062 12724215 ATTTGAGCACCTTAATGCC 58 NA Drosophila melanogaster 50 bru-2 FBgn0043904 FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351 3 4 4 139 2L 12385726 12389193 ATTGGAGCTATAAAGGCCC 59 12389295 12389314 GTATTGATGCCACAGAATGC 59 NA Drosophila melanogaster 50 CG31759 FBgn0051759 FBtr0080349,FBtr0080348 3 2 2 60 2L 12208526 12208545 TGCAGGTATTAGATACGGTC 58 12208568 12208586 TTTAGGGATGAAATCCACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6583 FBgn0032420 FBtr0080358 1 1 1 231 2L 12171920 12172130 GAGAGGATTCATCTGGGAC 58 12171707 12171725 AAATATTCTGGAGGCAACG 57 NA DesignRelaxed Drosophila melanogaster 50 Tom70 FBgn0032397 FBtr0080311,FBtr0080309 1 2 3 81 2L 12037205 12037223 GAACTTTCCATCTGCTGTG 58 12037052 12037161 GGATCAGCATAGTCATTAGC 57 NA Drosophila melanogaster 50 CG12602 FBgn0032373 FBtr0080255 2 1 1 140 2L 11743879 11743898 AGTACGACAGCTATATTGGC 59 11744001 11744081 TCATGAACTCAACCCAGTG 59 NA Drosophila melanogaster 50 CG33129 FBgn0053129 FBtr0080169,FBtr0080170,FBtr0080171,FBtr0080172 3 4 4 118 2L 10966083 10966101 GATCAAGACCACCTGTGAC 59 10965901 10966002 ATTGGTCAATGAACTTTGCC 59 NA DesignRelaxed Drosophila melanogaster 50 porin FBgn0004363 FBtr0080183,FBtr0100584,FBtr0080182 3 3 3 71 2L 10848756 10848774 GAAGACTAAGACCTCGTCG 59 10848703 10848721 AAGACCTTTCCAGACTCCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Nos FBgn0011676 FBtr0080188,FBtr0100492,FBtr0100484,FBtr0100491,FBtr0100488,FBtr0100490,FBtr0100493,FBtr0100489,FBtr0100486 1 9 10 160 2L 10831340 10831358 GTCACAGGATTATCGGTCG 59 10826070 10830602 TCGAGCAGGAAAGAATCTC 59 NA Drosophila melanogaster 50 w-cup FBgn0032269 FBtr0080132 1 1 1 60 2L 10577061 10577080 ATACCATCATACCGCAATCC 59 10577020 10577038 CTTGCCTCCATTTGATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4968 FBgn0032214 FBtr0079987 2 1 1 98 2L 10307483 10307565 TTCACGAAACGTTCATGGA 59 10307626 10307645 GCTCATTGAAGATCTTGTGC 59 NA Drosophila melanogaster 50 CG31714 FBgn0032180 FBtr0113032 1 1 1 134 2L 10068738 10068756 TCATCCTGCTCTTCTTTGC 59 10068342 10068641 AGAGTAATCCAAATCGCCTG 59 NA Drosophila melanogaster 50 CG4658 FBgn0032170 FBtr0079886,FBtr0079885,FBtr0079887 3 3 3 146 2L 9959099 9959555 CATGTCCATAGAGGTGTGG 59 9959665 9959683 AGATATCGATCCGGATGGT 59 NA Drosophila melanogaster 50 Taf11 FBgn0011291 FBtr0079924 2 1 1 68 2L 9763152 9763170 ACGAAATCCTCTTTCCCAC 59 9763102 9763120 ATTTCAGGTCGACATCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 emb FBgn0020497 FBtr0079663 3 1 1 82 2L 8406220 8406238 ATGCACCTTTATTGACGAG 57 8406284 8406391 CATAGAACGTGTGAACCTG 58 NA Drosophila melanogaster 50 CSN8 FBgn0028835 FBtr0079646 2 1 1 81 2L 8365258 8365276 TGCCGATTTCTTCAAACAC 58 8365318 8365399 GCGTTGCTTATTTAGAAGATCC 59 NA Drosophila melanogaster 50 Btk29A FBgn0003502 FBtr0079616,FBtr0079618,FBtr0112836,FBtr0079615,FBtr0079617,FBtr0112835 3 6 6 117 2L 8262033 8262051 ATGACTCACAAGAGCACTG 59 8261860 8261953 ACATACCATTCATAGCGCTC 59 NA Drosophila melanogaster 50 CG8460 FBgn0031996 FBtr0079586 1 1 1 186 2L 8197811 8197886 AACGGTTAAAGTGTTTCCC 58 8198036 8198054 TTTGTCATCTATGCGTCCA 58 NA Drosophila melanogaster 50 CG7196 FBgn0031944 FBtr0079482,FBtr0079483 2 2 2 60 2L 7765142 7765221 CAGAAATGCCAAGGATATTCG 59 7765243 7765261 CTCACCCATGATGATCTCC 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG6441 FBgn0031920 FBtr0079451,FBtr0079450 2 2 2 151 2L 7476342 7476360 AAATTTACCAGCCATCTGG 57 7476609 7476627 ATTAGACATGGCAATCCTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG15818 FBgn0031910 FBtr0079442 2 1 1 60 2L 7411338 7411358 GTTGAAAGATGGACAGAAGAG 58 7411379 7411398 GGATAGAGTCTTCTGGATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 nop5 FBgn0026196 FBtr0079369 1 1 1 60 2L 6918000 6918018 TATTACCGACAACATTGCC 57 6917958 6917976 CATATTATCCCTGGTGCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9547 FBgn0031824 FBtr0079263 2 1 1 60 2L 6493172 6493190 CAGCGACGAATATCATGTG 58 6493130 6493150 CTCATAGGTGTTAACTGACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr FBgn0015623 FBtr0079251,FBtr0079250 3 2 2 80 2L 6344877 6344896 TCGCTGAGTATTGTACTGAC 59 6344939 6345042 ATTTCTCCTTTCCTTCGGG 59 NA Drosophila melanogaster 50 Hsp60C FBgn0031728 FBtr0079111 2 1 3 195 2L 5662859 5662878 CCTGAAATATCACACTTCGT 57 5668871 5668951 CATGTTGACTGATATTTGCC 57 NA Nonspecific, InUTR Drosophila melanogaster 50 CG14020 FBgn0031707 FBtr0079094 2 1 1 60 2L 5518572 5518590 TGCAGGAGACATACTACAG 58 5518614 5518632 AGGTCAATGATGAGACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34126 FBgn0083962 FBtr0110840 2 1 1 80 2L 4991071 4991154 GGATAATTATAGGCACAAGACC 58 4991195 4991213 ATGCTTATATCGTCCTGGG 58 NA Drosophila melanogaster 50 Traf1 FBgn0026319 FBtr0112925 3 1 3 130 2L 4372531 4378918 GAACAGATTATCTATCCCGGTC 59 4379009 4379027 TTACAGGCGTTGAGATGTC 59 NA Drosophila melanogaster 50 CG31960 FBgn0051960 FBtr0077494 2 1 1 60 2L 3785115 3785133 CGAAGGAATTGGGAATGGT 59 3785157 3785175 TGAACCTCCGATTCATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cutlet FBgn0015376 FBtr0077541 2 1 1 97 2L 3710172 3710190 TCCAGAGGCATTCAAACTG 59 3710037 3710113 CGATTTCATCCAGAACTATGC 59 NA Drosophila melanogaster 50 CG16713 FBgn0031560 FBtr0077547 3 1 1 73 2L 3695113 3695131 ATTTATCTACGGAGGCTGC 59 3695058 3695077 GCAAACACTTGTCTTCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34175 FBgn0085204 FBtr0112366 2 1 1 150 2L 3398230 3398248 GGATACAGGGTATCAGGAG 57 3398362 3398380 AGCCTCTTTATTCTCGGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3277 FBgn0031518 FBtr0114460 1 1 1 102 2L 3315959 3316049 GAAACCTGCTAAGCTATTTGC 59 3316113 3316131 TTGGTCCTGGTCATAATCG 59 NA Drosophila melanogaster 50 gammaTub23C FBgn0004176 FBtr0077641 1 1 1 124 2L 2973361 2973439 ACTCCAAGCTCTACAATCC 58 2973525 2973545 GTCAATGATGTCGAATACCTC 58 NA Drosophila melanogaster 50 NTPase FBgn0024947 FBtr0077680,FBtr0077682,FBtr0077683,FBtr0077681 1 4 4 142 2L 2881427 2881445 CCTTACCTTCATCTCGACG 59 2881242 2881260 ATTTCTCGTCGCTAGTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 Or23a FBgn0026395 FBtr0077698 3 1 1 60 2L 2654761 2654782 ATCCTGAGAATCTCTGAAATCG 59 2654803 2654821 GATCCTGTTCGTTCTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31949 FBgn0051949 FBtr0077757 1 1 1 60 2L 2300520 2300538 CCGCTTATACTGACAATGG 57 2300560 2300580 GGAAACAGTTGAGAAACACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 dpr3 FBgn0053516 FBtr0091458 2 1 1 106 2L 2066584 2066749 ATAAATCGGTATCCTGGATACG 59 2065723 2065741 TGAGTCCTTCGATTCAGTC 58 NA Drosophila melanogaster 50 CG31672 FBgn0028952 FBtr0077825 1 1 1 91 2L 2046211 2046438 TCAAAGAGCCATACATGCA 59 2046493 2046511 TTGGTTATAGACTCCTGGC 58 NA Drosophila melanogaster 50 CG7337 FBgn0031374 FBtr0113011,FBtr0110882,FBtr0077811,FBtr0110883,FBtr0113012 1 5 5 129 2L 1937464 1937482 CACAATACGGAGAATGGGA 59 1937575 1938517 TATGGCCTACATTCTCCAG 58 NA Drosophila melanogaster 50 Gr22f FBgn0041249 FBtr0077902 1 1 1 62 2L 1755810 1755828 AACCCTCGAAGATTCACAC 59 1755766 1755784 TCGTACAAGGATGCTAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdlc2 FBgn0026141 FBtr0077925,FBtr0077924 1 2 2 60 2L 1344752 1344770 TCGACAAGAAGTACAACCC 59 1344794 1344812 ACATAGGATCCGAAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 robo3 FBgn0041097 FBtr0077921 2 1 1 96 2L 1287038 1287167 CTTTGGAAGATGTTCCGGA 59 1287227 1287245 TTTGGTTGTGGAGGTAACC 59 NA Drosophila melanogaster 50 CG4896 FBgn0031319 FBtr0077968,FBtr0114467,FBtr0077970 1 3 3 80 2L 1181782 1181861 TGAGGGTCTATCCTATCGT 58 1181905 1181923 CTCCTATTTGGTGGAGGAG 58 NA Drosophila melanogaster 50 CG14341 FBgn0031315 FBtr0077963,FBtr0077964 2 2 2 61 2L 1166885 1166904 AACTCCAAATGGATCTTGAC 57 1166986 1167006 TATAGTGGACATCGCTTTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lwr FBgn0010602 FBtr0078081,FBtr0078082 1 2 2 158 2L 541831 541849 CTACACCATCTACTGCCAG 59 541691 541709 TTCCAAACAAACGCTTACC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG3645 FBgn0031238 FBtr0078140,FBtr0078141 1 2 2 83 2L 253880 253963 AGAGATTGTGAGCACACTG 59 253815 253833 ATGGTCTTCTCAAGGTCCT 59 NA Drosophila melanogaster 50 kis FBgn0086902 FBtr0078144 1 1 2 85 2L 229226 229244 CAATCTGTGCTTTGTCACC 59 228268 229177 CATCGTCTTCGTTTATCGG 58 NA Drosophila melanogaster 50 CG17163 FBgn0039942 FBtr0113727 1 1 1 80 XHet 60674 60748 CCCATACAACCTAAGCAGG 59 60612 60630 GTCAAAGGCCTTAATGGGA 59 NA Nonspecific Drosophila melanogaster 50 CG17599 FBgn0031196 FBtr0077363 3 1 1 103 X 21944492 21944510 CTATCAGCGGGATAAGTGG 59 21944349 21944368 GCCAGTTAACTTTGAAATGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG1678 FBgn0031176 FBtr0077219 3 1 1 283 X 21273722 21273741 CGTGTAATCTTCCTCATCGT 59 21273458 21273476 TTTACATGAAGGACTCGGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG1722 FBgn0031168 FBtr0077237 1 1 1 60 X 21121744 21121762 CAGGACCAGACTCATAGAC 58 21121702 21121720 GAACAGTACCGAAGTACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11710 FBgn0031115 FBtr0089643,FBtr0089642 2 2 2 152 X 20299190 20299268 CATTAAGAAACACGAGGGT 57 20298987 20299005 TGTGGGATAATGACTTGGA 57 NA Drosophila melanogaster 50 CG33498 FBgn0053498 FBtr0089611 2 1 1 70 X 20096835 20096935 TGATGGCCATAGTTGAGTG 59 20096783 20096801 ATTCATGGCCTTGTACAGG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12702 FBgn0031070 FBtr0074809 1 1 1 108 X 19654453 19654529 GTAGCAAAGCATGTGTCTG 59 19654363 19654381 AGATCGAGCTTAGATTGCG 59 NA Drosophila melanogaster 50 kek5 FBgn0031016 FBtr0074707,FBtr0074708 1 2 2 199 X 19360067 19360085 TTCCAAGATGGACAAGACG 59 19360248 19362351 AGTGATTGGCCACATAGAC 59 NA Drosophila melanogaster 50 CG14196 FBgn0031002 FBtr0074691 2 1 1 68 X 19130551 19130569 ACTATTCACCCTGATCGGT 59 19130310 19130328 AGGGTAACCGAATAGTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG18258 FBgn0030827 FBtr0074392 1 1 1 67 X 17107075 17107267 TTGATTCTAGATGCTGCGA 58 17107298 17107316 ATAACCTCTGTGTTCAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12995 FBgn0030826 FBtr0074401,FBtr0074402 2 2 2 71 X 17103955 17103973 CTGATGATCCTTCTGGGTC 59 17103902 17103920 ATTGGAGGACACATCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9673 FBgn0030775 FBtr0074362 1 1 1 103 X 16597338 16597356 CCACAACTGATGAGGAGAC 59 16597253 16597271 ATAGGATGCAGTACCATCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 caz FBgn0011571 FBtr0074217,FBtr0074218 2 2 2 118 X 16186668 16186931 ATGCAATAGATGTAAGACTCCC 59 16187010 16187028 ATCCACGATCATTTCCTCG 59 NA Drosophila melanogaster 50 CG32580 FBgn0052580 FBtr0074205 1 1 1 149 X 15925446 15925530 TCAAACGACGAATCAAAGTG 59 15925642 15925660 GATGTCTCCTCTTGAGCTG 59 NA Drosophila melanogaster 50 CycD FBgn0010315 FBtr0074164,FBtr0074165 1 2 3 151 X 15802347 15802583 AATGGATGATGGAAGTGTG 57 15802214 15802232 CTTTGAAGCCAGTAAGAGG 57 NA Drosophila melanogaster 50 l(1)G0022 FBgn0027329 FBtr0074086 3 1 1 81 X 15640933 15641353 GTTAAGATGTTGGTTTCTGGC 59 15641396 15641414 GTTGGATCTGCATTTCGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9030 FBgn0030599 FBtr0073971 2 1 1 84 X 14848371 14848389 AACAGGACTATAGGCAACG 59 14847733 14848326 TGGGTTTAGACATAGAAAGGAC 59 NA Drosophila melanogaster 50 NetB FBgn0015774 FBtr0073940 1 1 1 88 X 14585416 14585692 AATCATATCTCATCCTTGGACG 59 14585349 14585367 GTCCTTCCATTCAAGGACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34346 FBgn0085375 FBtr0112555,FBtr0112554 3 2 2 130 X 13779531 13795531 CATCAGAGCCCATAAGGTG 59 13779419 13779437 CAACTAAGGTTTGCAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11063 FBgn0030530 FBtr0073834 1 1 1 113 X 13721459 13721477 CTGTATCACACCAACTGCT 59 13721130 13721382 GCCCGAGTACATGTAATCC 59 NA Drosophila melanogaster 50 CG32640 FBgn0052640 FBtr0073728 1 1 1 60 X 13072239 13072259 GAATAAACATCCACGAACGAC 59 13072280 13072299 CAGGACATTAAATGCTTCGT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2750 FBgn0030376 FBtr0073629 2 1 1 82 X 12002066 12002084 TGAGGAGAATTCGAGAACG 59 12002130 12002277 AATGGTCGTATGTTGTTGC 58 NA Drosophila melanogaster 50 Tango4 FBgn0030365 FBtr0073622 1 1 1 281 X 11915309 11915386 TTTAGAGAAGTTGCGACGT 59 11915631 11915649 ATATCTGCATTGCTGTTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15740 FBgn0030340 FBtr0073605 3 1 1 61 X 11738978 11738996 GAACAGGGTCAGGAATACC 59 11738935 11738953 GGATTGGAGAACTCGTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1572 FBgn0030309 FBtr0073543,FBtr0073544 1 2 2 80 X 11450009 11450027 ACGTTCTGTTTACTCCTCG 59 11449817 11449968 GTAAATCAGCTCATAGATCGTC 58 NA Drosophila melanogaster 50 CG32683 FBgn0052683 FBtr0071463 1 1 1 156 X 10346314 10346332 GAAGTGGAGATGGATGTCG 59 10321537 10346194 CACGATGAGTGGATCTGTC 59 NA Nonspecific Drosophila melanogaster 50 l(1)G0230 FBgn0028342 FBtr0071438 3 1 1 260 X 10107319 10107338 AATGTCCTTCGTTAAGAACG 58 10107635 10107653 AAGAACTTGAGGGTCTTGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG34104 FBgn0083940 FBtr0110783 3 1 2 99 X 10028569 10040467 TTATAATGCCGATGTCAACG 58 10040529 10040547 ATAGCAAAGCTCCCTTAGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG15312 FBgn0030174 FBtr0071421,FBtr0071423,FBtr0071422 2 3 3 71 X 9955171 9955254 GATAGTTCAGACTGGTCGT 58 9955118 9955136 AAGCATACGTAGATTCCCG 59 NA DesignRelaxed Drosophila melanogaster 50 HP1b FBgn0030082 FBtr0071284 1 1 1 62 X 8975459 8975477 TAAAGTGGAAGGGCTATCC 58 8975503 8975521 GACAGTCGAGATTCTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ogg1 FBgn0027864 FBtr0071223 1 1 1 81 X 8585512 8585533 CAAGAAGATTTACGAAGAGGTC 58 8585574 8585652 AAAGAGAATAGCTTGAGCCC 59 NA Drosophila melanogaster 50 Atg5 FBgn0029943 FBtr0071065 1 1 1 80 X 7217285 7217387 ATCCAATTGGTGTCCTATACG 59 7217225 7217244 ACTTGGAGAAGTGAATGGTG 59 NA Drosophila melanogaster 50 CG32779 FBgn0052779 FBtr0070601 1 1 1 155 X 3697168 3697186 GAATGTCAGTCCTGGTCAG 59 3697305 3697323 CACGAGAGGTTCTTATCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14816 FBgn0023517 FBtr0070366 2 1 1 168 X 1767146 1767164 GTAGTAGCCTCCACAATGG 59 1766930 1767014 GAAGGAACTGAGATGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SNF1A FBgn0023169 FBtr0070216,FBtr0070217,FBtr0070218 3 3 3 78 X 1270214 1270740 GTACCAGGTCATATCGACG 59 1270781 1270800 AATATAGTCGAACAGCTCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3021 FBgn0040337 FBtr0070173 2 1 1 119 X 921579 921686 GTACATCACTTCCAAACGTG 59 921768 921786 TGAAGGAATGAGCTCAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rbf FBgn0015799 FBtr0070146 3 1 1 83 X 694341 694420 GCAAGATGAGCATCTACGA 59 694276 694294 TCTCGTTGACAAACTCCTG 59 NA Drosophila melanogaster 50 sc FBgn0004170 FBtr0070073 2 1 1 60 X 290444 290465 GAATCAGTATCATCTCTATCGC 58 290483 290504 GGGATTGGTCTACATTATATGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40743 FBgn0085772 FBtr0114222 1 1 1 90 U 10004111 10004129 AGGACACATGAACATCGAC 59 10004183 10004201 TATGTAGTCCAAGCAGCAC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CR40959 FBgn0085777 FBtr0114228 3 1 1 176 U 5913931 5913949 ATGTAAGTTGAGCCGTACC 59 5914087 5914107 CTCGGTCTAGTAAATACACGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG41533 FBgn0085673 FBtr0114121 1 1 1 102 U 7761069 7761087 GTGAAGATCTACTGCCCAC 59 7760849 7760867 ATTTAAGTGGCATCAAGGC 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 l(3)s1921 FBgn0011013 FBtr0085863 3 1 1 61 3R 27572697 27572715 GCTGAAGGCCATCTATCTG 59 27572654 27572672 TGAACATGGCCCTATATCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycG FBgn0039858 FBtr0085802,FBtr0085800,FBtr0085803,FBtr0085801,FBtr0085799 2 5 5 91 3R 27426460 27426478 ACATCAAGGAGTCGTACAC 59 27426317 27426407 ATCAGGAATCCTCATGTACTG 58 NA Drosophila melanogaster 50 CG2267 FBgn0039792 FBtr0085672 3 1 1 117 3R 26454370 26454443 GATGACTGACTGGAAGAGAC 59 26454272 26454290 ATTGGTAGATGCATCCCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2014 FBgn0039669 FBtr0085440 2 1 1 89 3R 25341763 25341781 TGGATGACCTGCTAAACTG 59 25341834 25341852 CAATGTGCATCATTTCGAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14512 FBgn0039639 FBtr0085413 1 1 1 60 3R 24964036 24964055 TAGAGCAGTACAATTTCCGG 59 24963995 24964013 CCAATAATTAGGTCTGCGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6425 FBgn0039449 FBtr0085047 1 1 1 161 3R 22541890 22541908 AGAGCTAAGGGATACTCCG 59 22541682 22541700 AATTGGTACTCGCTGAAGG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Ald FBgn0000064 FBtr0114544,FBtr0085000 2 2 6 92 3R 22082687 22082706 CAAGAAGGAGAACATTGCTG 59 22082305 22082325 GATCCAGCTGTATAGTTACCA 58 NA DesignNoJunction Drosophila melanogaster 50 to FBgn0039298 FBtr0084810 2 1 1 86 3R 21066320 21066405 CAAAGTAAAGGGTTTCGGA 57 21066455 21066473 TTATAGGGTCCAACGAGTG 58 NA Drosophila melanogaster 50 CG11852 FBgn0039297 FBtr0084809 2 1 1 201 3R 21064165 21064238 AAAGATGAACATTCGGCTG 58 21064401 21064421 GTTCTCGAGGAATAAATCCTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG13654 FBgn0039290 FBtr0084805 3 1 1 82 3R 21036719 21036984 CATTGAACAACAAGGACTCG 59 21037029 21037047 TGATTATCGGACGGAATCG 59 NA Drosophila melanogaster 50 bai FBgn0045866 FBtr0084758 2 1 1 252 3R 20865337 20865426 ATCATCGACTACATTGCAC 57 20865769 20865789 GCTTAAGATCAACTTCAAGGG 58 NA DesignNoJunction Drosophila melanogaster 50 tld FBgn0003719 FBtr0084691 3 1 1 81 3R 20577195 20577264 AGATTCGAGGTGGTATGTG 58 20577307 20577327 TGTAGTCCATAGGATAGTTGG 58 NA Drosophila melanogaster 50 CG10208 FBgn0039118 FBtr0084461 2 1 1 95 3R 19599523 19599610 GATAATAAACGTTATCGTGCCC 59 19599449 19599467 ATCACCCTCTTGCATTGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17380 FBgn0039077 FBtr0084428 1 1 1 90 3R 19229099 19229118 GCTGATGAAGACGAATACCT 59 19229028 19229048 TCATTACCGAACCTTCTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 orb FBgn0004882 FBtr0100228,FBtr0084386,FBtr0084385,FBtr0084384,FBtr0100227 2 5 5 80 3R 19092488 19092506 TGATTCTCACTGTGGTAGG 58 19092371 19092446 CAAGGAATGACTTCAACATCC 59 NA Drosophila melanogaster 50 cnc FBgn0000338 FBtr0084392,FBtr0084393 1 2 7 88 3R 19014842 19017426 TGAATGAGAGCTTCTGTCG 59 19014772 19014790 GTTGCTAACATGTCCACTG 58 NA Drosophila melanogaster 50 CG7048 FBgn0038976 FBtr0084257 3 1 1 149 3R 18313400 18313418 AGGTTCGTCATAGACATCG 58 18313592 18313610 TGAGTTATAGAAGCGCGTC 59 NA DesignNoJunction Drosophila melanogaster 50 Takl1 FBgn0046689 FBtr0083996 1 1 1 122 3R 16597974 16597992 GTTGATGGAGTACCTGGAG 59 16597817 16597888 AAGTATGCTAAGGCCTTGG 59 NA Drosophila melanogaster 50 CG33934 FBgn0064119 FBtr0091940,FBtr0091939 3 2 2 94 3R 15873183 15873268 CTTTCTGAATGCCAAAGCC 59 15873324 15873344 ACTTGAAGAAGGTGTACTGTG 59 NA Nonspecific Drosophila melanogaster 50 CG14297 FBgn0038655 FBtr0083696 2 1 1 106 3R 14724205 14724223 CTGAGGACATGGAACACTG 59 14724293 14724372 TCATTCACGGTGAACTGAC 59 NA Drosophila melanogaster 50 CG7702 FBgn0038638 FBtr0083664 3 1 2 300 3R 14495418 14496876 CTATTCTATACTGCGAGGCA 58 14498586 14498604 GAATGTCCTCATGTTGGCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7655 FBgn0038536 FBtr0083479 2 1 1 147 3R 13508837 13508915 TTATTTGATCGTCAACTGGC 58 13509025 13509043 CAGATCCATCACCAAACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alt FBgn0038535 FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416 1 6 6 163 3R 13500932 13500950 TAGCAACCACAATAGCACC 59 13500724 13500805 ATGTGTTTGTCGTCTTGGT 59 NA Drosophila melanogaster 50 kuk FBgn0038476 FBtr0083398,FBtr0083397 2 2 2 60 3R 12908690 12908709 ATGGCAAAGATAAGTCACAG 57 12908731 12908750 GATTTCTCTACCTTCTGGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14909 FBgn0038458 FBtr0083366 3 1 1 66 3R 12801101 12801119 GATGCAGTTGAATCCACTG 58 12801149 12801167 GTAGGTTATCATGCCGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cctgamma FBgn0015019 FBtr0083338,FBtr0083337 2 2 2 85 3R 12474348 12474433 CATTAAACGCTATGCCAAGG 59 12474481 12474499 CTTTGTTGATCATCACGCC 59 NA Drosophila melanogaster 50 CG14892 FBgn0038447 FBtr0083327 1 1 1 82 3R 12422388 12422407 CCAACATTAGTGGTGATCTC 57 12422452 12422536 GTAGGCATCTCTACACCTG 58 NA Drosophila melanogaster 50 CG17930 FBgn0038416 FBtr0083271 2 1 1 223 3R 12153865 12153943 AGCTACCCTTCTCTTTGTG 58 12154190 12154209 CACTCACAAAGATAATGGCG 59 NA DesignNoJunction Drosophila melanogaster 50 Trax FBgn0038327 FBtr0083093,FBtr0083092 3 2 2 61 3R 11187825 11187843 GATCGCGGTTAACTTTAGG 58 11187868 11187886 GGAACTGGTAGACATCCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6752 FBgn0038296 FBtr0083029 2 1 1 91 3R 11019523 11019541 GATGCTAGGTTGGGATCAG 59 11019378 11019469 AGGTAAAGCGTAGTATCCAC 58 NA Drosophila melanogaster 50 CG17202 FBgn0038043 FBtr0082587 2 1 1 90 3R 8248583 8248663 GTCCTTTAAGCCCATTGAC 58 8248717 8248735 TATGAAGAGCTTGGTCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12946 FBgn0037750 FBtr0082159,FBtr0110789 3 2 2 102 3R 5597853 5597930 CGTAAAGCTGAAGAAAGTGG 59 5597770 5597791 CTTCAGTTCACTTAGAAAGTCG 59 NA Drosophila melanogaster 50 Snap24 FBgn0028401 FBtr0082163 2 1 1 208 3R 5588194 5588212 GCAAAGGGTCATTGATGAG 58 5588004 5588022 CATTGATGCGATCAACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11737 FBgn0037592 FBtr0081869 3 1 1 87 3R 4346264 4346336 TCTATAAGTCGGTGTCCTG 57 4346387 4346405 ATAGAGGCAATTAACGACG 57 NA Drosophila melanogaster 50 alpha-Est5 FBgn0015573 FBtr0081547 2 1 1 107 3R 3361247 3361464 GATTGTTTGGGATTCCTATCG 58 3361160 3361178 GGAGATGTACTGCTTGACC 59 NA Drosophila melanogaster 50 CG2926 FBgn0037344 FBtr0078752 3 1 1 99 3R 1410966 1410984 CTCAATTTACTCGCAGGAG 57 1410392 1410905 GTCATCATCCTTATCAGATGC 58 NA Drosophila melanogaster 50 CG31530 FBgn0051530 FBtr0078882 2 1 1 86 3R 578309 578533 AATCTATCTGTGGCAGTGG 59 578241 578259 TCCAGCAAGATCTTCTTGG 59 NA Drosophila melanogaster 50 snoRNA:Psi18S-1086 FBgn0083058 FBtr0113602 1 1 1 81 3L 833172 833193 CCAGAAATCAGAAATGTCTGTG 59 833112 833131 TAACGATGCTAGTAAGCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40294 FBgn0058294 FBtr0111150 2 1 1 72 3L 23573503 23573521 TTTCACAGTAAGGAGAGCA 58 23573449 23573467 AATCTTCTGACGGTTTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Las FBgn0029158 FBtr0078229,FBtr0078228 1 2 2 145 3L 20424694 20424925 CGATTATGCTTATGGGCGA 59 20424567 20424588 CAGAACAATGTAATCCAATCCC 59 NA Drosophila melanogaster 50 CG10419 FBgn0036850 FBtr0075032 1 1 1 114 3L 19093100 19093169 AGAGATGTTGGACAATCCC 58 19093004 19093022 AAGAACTAGGACCTGGGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18136 FBgn0036839 FBtr0075040 1 1 1 93 3L 18994615 18994633 CTCCATGAGACCAATACCC 59 18994484 18994558 CAGAAAGTTCCTCCATTGC 58 NA Drosophila melanogaster 50 CG14353 FBgn0036771 FBtr0075144 2 1 1 112 3L 17901522 17901541 AAGTCCGTAGAGAAGAAGGT 59 17901616 17901690 ATATCCAGAACTTGCAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16838 FBgn0036574 FBtr0089713,FBtr0089714 1 2 2 169 3L 16128868 16128886 TTGATAAGCCGGTTCAGAG 59 16129422 16129446 CAGATAGTGATAGAATCTACTCGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG5161 FBgn0036573 FBtr0075491 3 1 1 79 3L 16124525 16124601 CTAAGGAAAGAGGACCACAG 59 16124465 16124483 TTCCATTTGTGCTCATCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Zn72D FBgn0017453 FBtr0075493,FBtr0075494 3 2 2 287 3L 16104977 16105111 ATAGGACAGCTAATCGCAC 59 16104708 16104726 GATAGAATGTCTTGGTGGC 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 dbo FBgn0040230 FBtr0075505 3 1 1 163 3L 15822963 15823119 GCGATATGATCCCAGACAC 59 15823244 15823264 TATTGGTCAGTGGATTGTAGC 59 NA Drosophila melanogaster 50 comm2 FBgn0041160 FBtr0075580 2 1 1 104 3L 15691542 15692302 TATCGCAACAATGCAAATGG 59 15691457 15691475 TACTAGGGTGTATTCCGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tfb2 FBgn0036513 FBtr0075595 3 1 1 61 3L 15572651 15572669 TTCCAACGTAAGCGTAAGG 59 15572608 15572626 CTTGTCACATTCAGAGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rgl FBgn0026376 FBtr0075796,FBtr0075794,FBtr0075793,FBtr0075795 1 4 4 101 3L 13902205 13902223 AACTTTAGTTCGCTCAAGG 57 13902061 13902142 GACTTCCATCCTTTCTTTAGG 58 NA Drosophila melanogaster 50 CG17687 FBgn0036348 FBtr0075838 1 1 1 81 3L 13346879 13346956 CCAAATTCAGGAAGCTGGA 59 13347000 13347019 TTCCTTGAAGATGACCTGAC 59 NA Drosophila melanogaster 50 CG32117 FBgn0052117 FBtr0075905 2 1 1 61 3L 12896341 12896359 GTACATAGCCATGAAACGC 58 12896298 12896316 AGATCTTCGGTTTGGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10948 FBgn0036317 FBtr0075940,FBtr0075939,FBtr0075938 1 3 3 80 3L 12838206 12838226 AAAGTCGAATCATGAGGAGAC 59 12838014 12838164 TTGAAAGTCACCTCTTCCG 59 NA InUTR Drosophila melanogaster 50 CG5906 FBgn0036217 FBtr0076071 3 1 1 60 3L 11864080 11864100 TATTGGTACCAACATCTGGAC 59 11864040 11864060 TGACTACAACCACCTTATAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32087 FBgn0052087 FBtr0076117 2 1 1 61 3L 11726487 11726507 CCTGGAGATGATACTGTATGC 59 11726530 11726548 CTTAGACGCTGAACTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Alg10 FBgn0052076 FBtr0076217 1 1 1 90 3L 11158853 11158935 AGAGTTGTGGCTTCAACTC 59 11158989 11159007 GATCGAAGCGTAGAAACAG 58 NA DesignNoJunction Drosophila melanogaster 50 Sod FBgn0003462 FBtr0076229 2 1 1 169 3L 11105696 11105714 TCCAAGATTACGCTCTTCG 59 11105545 11105564 ATTATCGCTTAGACCTTGGC 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 simj FBgn0010762 FBtr0076262,FBtr0076264,FBtr0076263 2 3 3 89 3L 10680182 10680200 GGGACCATAAGCAATTCTG 58 10680253 10680346 GCGATCATTCTTCTGATCG 58 NA Drosophila melanogaster 50 CG6674 FBgn0036063 FBtr0076354 2 1 1 70 3L 9964695 9964775 CCAGATTACCAGGTAAACCC 59 9964644 9964662 CTCTGTTCGGAAATGTCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34382 FBgn0085411 FBtr0112620 2 1 1 189 3L 9873509 9873527 GGTCAGGAAACCATCTACG 59 9875408 9875426 CTTGCAGATACACGTAGTG 57 NA DesignNoJunction Drosophila melanogaster 50 fry FBgn0016081 FBtr0076417,FBtr0110843 1 2 2 80 3L 9625378 9625396 AAGTGGGATGAAATTTCCG 57 9625254 9625337 GGATACTATAAAGGCTTCTGTG 58 NA Drosophila melanogaster 50 CG33702 FBgn0053702 FBtr0091690 3 1 1 63 3L 9506050 9506143 CACTCGTGTCCATATACAGAG 59 9506007 9506026 GCGTCTTATCGTTGAAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 phol FBgn0035997 FBtr0076475 2 1 1 60 3L 9446671 9446689 GTAGAACAGAACGAGGAGG 59 9446629 9446648 GTTAGGATGTTAGGGACGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mRpL12 FBgn0011787 FBtr0076511 2 1 1 81 3L 8950442 8950460 GGTGAAGAACCTACTCGAG 59 8950505 8950523 GTCCTCCTTAACGATGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 se FBgn0086348 FBtr0076623 3 1 1 97 3L 8514298 8514319 CGTGGAGAGGATTATAACTACG 59 8514434 8514452 ATGTAGAAGGCCATCACAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG7083 FBgn0035877 FBtr0076604 3 1 1 60 3L 8335248 8335266 TTCGATGAGTGATAGTGGT 57 8335289 8335308 TATGTTCACATGTTCCTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rab-RP3 FBgn0015793 FBtr0076705 2 1 1 138 3L 8291042 8291060 CGAGGTGGACTTTGAAGAG 59 8291162 8291228 GTGTTGGCGTTTAAGTTCG 59 NA Drosophila melanogaster 50 CG8492 FBgn0035813 FBtr0076813 3 1 1 111 3L 7721847 7722347 GCAATGAGTCCAACTACTC 57 7721754 7721773 TAGTCAAACCTACAGTTGGA 57 NA Drosophila melanogaster 50 CG8605 FBgn0035762 FBtr0076838 2 1 1 80 3L 7317839 7317915 CTACAATCTCAGGCTGGAG 59 7317958 7317977 GCAATCTGTTCTATGTCCAC 58 NA Drosophila melanogaster 50 corn FBgn0028383 FBtr0076923 1 1 1 98 3L 7138619 7138699 GAAATGGAGACGATTCCGA 59 7138539 7138557 CATGGTGTACCACATCCTC 59 NA Drosophila melanogaster 50 form3 FBgn0053556 FBtr0091533,FBtr0113469 2 2 2 242 3L 7112141 7112159 CAAGCGAAGTCTGAATGTG 59 7112364 7112444 AATTTGTAATTGGGCACCTC 58 NA DesignRelaxed Drosophila melanogaster 50 Lcp65Ag1 FBgn0020638 FBtr0077058 3 1 1 162 3L 6127994 6128013 CTACCAAGTCAACTACATCG 57 6127851 6127869 TCTCCTTGATAAGAACGGT 57 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG6610 FBgn0035675 FBtr0077048 2 1 1 60 3L 6069046 6069130 AATATCACAATGTTGGTGCC 58 6069152 6069171 GTTTACAAATGGAACCTTGC 57 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 Bj1 FBgn0002638 FBtr0077076,FBtr0077075,FBtr0077074 1 3 3 196 3L 5924798 5924816 ATTTGGTCATCCTGACCAC 59 5924561 5924579 GAATGTGCAGTAGTTGGTG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG7509 FBgn0035575 FBtr0073362 1 1 1 98 3L 4803910 4803985 CGGATAAGTCATATAGATGGCA 59 4803833 4803851 TAGATCAGCTGGAATGCTG 59 NA Drosophila melanogaster 50 CG13720 FBgn0035555 FBtr0073327 2 1 1 60 3L 4499090 4499110 GTACTTGATAAACTCAGAGGG 57 4499050 4499070 GGGTTTAGTTTGACTATCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 DopEcR FBgn0035538 FBtr0100185,FBtr0100186,FBtr0073337 3 3 3 81 3L 4379470 4379488 TACTCAACCGATCAACTGG 58 4371891 4379425 CTAATTGTGCGCATCTGAG 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 Cpr64Aa FBgn0035510 FBtr0073254 2 1 1 197 3L 4209067 4209085 AGAAACTGATCCTCGTCCT 59 4208561 4208907 CATCATGAACATCGTAGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rop FBgn0004574 FBtr0073263 3 1 1 60 3L 4138506 4138525 GTCTGATACGAGACTTCGAG 59 4138465 4138483 AAGAAGACATGGGCATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14982 FBgn0035477 FBtr0073163 3 1 1 133 3L 3945593 3945668 TCAAGGAGAAATGGGAGGA 59 3945765 3945783 AGACATTCTCGTGATCCAC 59 NA Drosophila melanogaster 50 CG14965 FBgn0035414 FBtr0073109 2 1 1 60 3L 3192016 3192034 GGTGAGACACAGAATTTGG 58 3191974 3191994 CCTCTTCTGTCAACTCTACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32845 FBgn0052845 FBtr0072518 1 1 1 60 3L 272854 272874 CGAGGGATCTAATTCAATCAG 57 272814 272832 TCGGAGATCATATTTGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 snoRNA:Psi28S-2444 FBgn0082987 FBtr0113515 1 1 1 63 2R 15330668 15330686 CTGATGCTCAGTGAATGTG 58 15330713 15330731 ATGGAATGTAGCAAGTCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR33471 FBgn0053471 FBtr0088081 3 1 1 60 2R 7586959 7586978 TGAGAACAGTGTCTTCAGAG 58 7586918 7586938 CATAGACGAACATATCCATGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tal FBgn0023477 FBtr0072141 2 1 1 257 2R 19828048 19828598 AGCCATCAACATCTATAAGCC 59 19828876 19828894 CTCTTCTTGGTGTCGAAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG9815 FBgn0034861 FBtr0113111,FBtr0072024 2 2 2 191 2R 19309401 19309472 AGATTCCAATTTCGACGCT 59 19309228 19309246 AAGATTACGCCATCTCCTC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG30271 FBgn0050271 FBtr0113366,FBtr0071886 2 2 2 138 2R 18706959 18706977 CTGGATTCACGAGAAGGAC 59 18707079 18707155 GATGGCATTCATGACATGG 58 NA Drosophila melanogaster 50 CG3624 FBgn0034724 FBtr0071845 2 1 1 76 2R 18282173 18282191 AGATCAACAAGACCCTCAG 58 18282057 18282133 CAAATTGCTTCCCACATCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG4386 FBgn0034661 FBtr0071743 2 1 1 151 2R 17687667 17687686 CATCATCAAGTTGGATGAGC 58 17687470 17687554 CCTGAAGAGTATCGGAAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30389 FBgn0050389 FBtr0071633,FBtr0071632,FBtr0071634 2 3 3 85 2R 17037702 17037783 AAGTGGAACAAGAGTACCG 59 17037635 17037655 CGCATTTAATAGAATCTCGGG 58 NA Drosophila melanogaster 50 CG30447 FBgn0050447 FBtr0086338 3 1 1 60 2R 15834991 15835009 GGTAGTGCGGCTATTACTC 59 15835032 15835051 CAGAAGCAAGTATTCTGCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 endoB FBgn0034433 FBtr0113097,FBtr0113098 1 2 4 81 2R 15196011 15196540 GTCTCCACAGTGATCTTCG 59 15195948 15195966 GACCCTTCAATAGACCCTG 59 NA Drosophila melanogaster 50 Pepck FBgn0003067 FBtr0086701 3 1 2 113 2R 14424571 14424753 TTATCTCCGGCAATGTCTG 59 14424828 14424848 GCAAATCCACATTTCCATAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4984 FBgn0034267 FBtr0086862 3 1 1 80 2R 13619710 13619729 TAAGTACATCGACATGTTCC 57 13619770 13619859 CGGATATAGTCCAATAGTTCG 57 NA Drosophila melanogaster 50 CG4853 FBgn0034230 FBtr0086938 3 1 2 122 2R 13403022 13403097 GGTTTCTATCCTAAACACCCA 59 13403181 13403199 TTGATAAGCAGGTTGACCA 58 NA Drosophila melanogaster 50 CG10956 FBgn0034195 FBtr0110777 2 1 1 66 2R 13010636 13010715 GGCAATGGTAGTTTGACAC 59 13010588 13010606 AAGCAAATGGATGAGTAGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6984 FBgn0034191 FBtr0086979 3 1 1 181 2R 12979979 12980054 CAAGTTCTCTACTCCAGGG 58 12980199 12980217 TATCTAGTTCCTCTGCAGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ark FBgn0024252 FBtr0086968,FBtr0086967 2 2 2 93 2R 12909214 12909232 CAGGATGTACATCGAGCAG 59 12909289 12909428 TAGCTTCAGATACGGTTGC 59 NA Drosophila melanogaster 50 CG30099 FBgn0050099 FBtr0087180 2 1 1 87 2R 12176038 12176056 ATCTTCAGATGAAGGCTGC 59 12175969 12175987 AGATCCTTCTTATCCCGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8386 FBgn0034061 FBtr0087264 3 1 1 119 2R 11894641 11894659 ATCACTTTAAGCCACTGTG 57 11894479 11894497 TGATTCCCTTCTCGATGAG 58 NA DesignNoJunction Drosophila melanogaster 50 fus FBgn0023441 FBtr0087346,FBtr0087344,FBtr0087345,FBtr0087343 1 4 6 110 2R 11555363 11559507 CAACTGGACAGATCGTAGG 59 11555271 11555289 TGTTATTGGTGACACTCGA 58 NA Drosophila melanogaster 50 CG12862 FBgn0033950 FBtr0087483 2 1 2 67 2R 10528043 10528062 ATAGAGAAGGACAAGTGGAG 58 10527995 10528014 GACAGATTTATGCACTTGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6337 FBgn0033873 FBtr0087646 1 1 1 73 2R 9722349 9722489 GACTTTCAAACTTACGAGGAC 58 9722296 9722314 TAGTAGTTGGCGAAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4714 FBgn0033819 FBtr0087756 1 1 1 73 2R 9139867 9139885 AAGATTTCTTGTCCGTGCA 59 9139755 9139773 CTTCAGATCGGTATTGCGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG33138 FBgn0053138 FBtr0087732 1 1 1 80 2R 9061160 9061178 TCAATTATCTGGGACTGGC 59 9061222 9061302 TTCCAGAAACATCCTCTGC 59 NA Drosophila melanogaster 50 CG12442 FBgn0033770 FBtr0087849 2 1 2 80 2R 8588060 8588139 GATGTATGAACTAAGTCTACTCCC 59 8588178 8588196 CTCAGCTCGTAGATCTCCT 59 NA Drosophila melanogaster 50 CG8878 FBgn0027504 FBtr0088018,FBtr0088017 2 2 2 91 2R 8034899 8034917 GATGAAGAGGAGAACCAGG 59 8034688 8034844 CTATCCGATTCATCCTCGC 59 NA Drosophila melanogaster 50 otk FBgn0004839 FBtr0088028 2 1 1 97 2R 7890222 7890301 CTTCACCCATAGGGATCTG 58 7890143 7890161 GGCTATACTTGTCCTTGCA 59 NA Drosophila melanogaster 50 S2P FBgn0033656 FBtr0088063 3 1 1 117 2R 7730980 7730999 GGATACTACATCACAACCCT 58 7730815 7730903 GGCAGAAGATGAACTTTATTCC 59 NA Drosophila melanogaster 50 CG9003 FBgn0033639 FBtr0113067,FBtr0113068,FBtr0088088,FBtr0113069 3 4 4 108 2R 7531917 7532003 GATCAGTCCGTGAGAACTC 59 7531827 7531845 AATACCTGCTGATGGACTG 59 NA Drosophila melanogaster 50 CG33472 FBgn0053472 FBtr0114575,FBtr0089862 2 2 2 85 2R 7332256 7333648 GTATTAACAGCCGTTATCGGA 59 7334661 7334679 TAGCAGTAAATCGATCGCG 59 NA Drosophila melanogaster 50 CG9062 FBgn0033607 FBtr0088181 2 1 1 85 2R 7169522 7169540 CACCAAACGAAATGGAACC 59 7169386 7169475 ACCCACTTCACTAAAGATGAC 59 NA Drosophila melanogaster 50 CG30000 FBgn0050000 FBtr0088463 2 1 1 114 2R 5493874 5493958 GTCTCCATAGTGCGATATCTC 59 5494034 5494052 CATTGAAATGCTGCCACTC 59 NA Drosophila melanogaster 50 CG1888 FBgn0033421 FBtr0088547 2 1 1 188 2R 5434388 5434406 GAATCCGTGTACATCATCG 58 5433789 5434237 TTAATGGCTTCATCTTGCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 babo FBgn0011300 FBtr0088658,FBtr0088659 3 2 2 119 2R 4847705 4847786 AGGAGATGAAGAAGGTGGT 59 4847869 4847887 GATTGGGATACCAGCACTC 59 NA Drosophila melanogaster 50 CG14744 FBgn0033324 FBtr0113056 2 1 1 113 2R 4595305 4595323 ACTTCAGCATCTCCATGTG 59 4595141 4595231 TGAGGATAATAAACAGGTGGTG 59 NA Drosophila melanogaster 50 CG14749 FBgn0033316 FBtr0088695 2 1 1 60 2R 4516641 4516659 TACTTCTGTTCACCCAGAC 58 4516683 4516701 GGACTGATACAGTGCTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34217 FBgn0085246 FBtr0112410 2 1 1 60 2R 4116083 4116101 AAGTGTTACTAACTGTGGC 57 4116041 4116060 CCATCTTCAGAACTAGATGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cul-4 FBgn0033260 FBtr0088821 2 1 1 93 2R 3992258 3992276 TCCCGAGTACTTACAACAC 58 3992132 3992201 AATCAGTGGATGTTTGGTG 57 NA Drosophila melanogaster 50 Eb1 FBgn0027066 FBtr0086128,FBtr0086131,FBtr0086127,FBtr0086129,FBtr0086130 2 5 5 160 2R 2642342 2642416 CAAATCAGGTGATGGATATGC 59 2642600 2642619 AGTCGCATATAAGATGTCCA 58 NA Drosophila melanogaster 50 CG7845 FBgn0033059 FBtr0086023 2 1 1 63 2R 1962596 1962615 GTGGACAATGAATACGAGGA 59 1962489 1962570 ACTCATTATCGCTGTCACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17683 FBgn0040002 FBtr0111298,FBtr0111301,FBtr0111299,FBtr0111300,FBtr0111302 2 5 5 67 2R 19480 19555 TTCAGTTGAGGTGGAACAG 59 19585 19604 AATCAAGGAGATCGTACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6675 FBgn0032973 FBtr0085936 3 1 1 60 2L 22109108 22109126 TACTAATAATGCGGACGCA 58 22109150 22109229 GGTATGCCTATTGTAGCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31703 FBgn0051703 FBtr0085946,FBtr0111227 1 2 2 101 2L 22103103 22103121 CTTCAGCTATGGTCAACGA 59 22103020 22103040 AATGGAGATCTTTCTCTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tsh FBgn0003866 FBtr0085907,FBtr0085906 1 2 2 68 2L 21836641 21836835 GGATAGAAATCAGAAAGCGC 59 21836866 21836884 TTCAATCTCCGATCAGCAG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 step FBgn0086779 FBtr0110946,FBtr0085910 1 2 2 80 2L 21742827 21742845 ATGAGGATGTGCTTAAGGC 59 21742688 21742783 ACAGAAATTGTCTGAGGGC 59 NA Drosophila melanogaster 50 CG31676 FBgn0051676 FBtr0081424 3 1 1 155 2L 20848779 20848797 AATGAGCCAAAGGATCTGG 59 20848916 20848934 TGTTCGTCTGTGATTTGTG 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 spir FBgn0003475 FBtr0081355,FBtr0081353,FBtr0081354,FBtr0081352 1 4 4 94 2L 20343658 20343746 TTCTCCAAGTTTCAGGACG 59 20343804 20343822 AAATGTGGATGATGCTGGT 59 NA Drosophila melanogaster 50 CG13282 FBgn0032612 FBtr0080929 1 1 1 110 2L 16832789 16832865 AATTCCTTTGCTTGCAGTC 58 16832697 16832716 CAGGAGGTAGGATATGTAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG15260 FBgn0028850 FBtr0080745 1 1 1 61 2L 15292103 15292121 ACCGGAATGAGTATCACAC 59 15292060 15292079 GTTATCACCCACTTGTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 TfIIS FBgn0010422 FBtr0080722 3 1 1 63 2L 15059536 15059554 CGATGAACCTATGACCACC 59 15059491 15059509 TTAGCAGAACTTCCATCGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7532 FBgn0028915 FBtr0080640 2 1 1 240 2L 14349492 14349510 TTCCTTGGCTTCATGATCC 59 14349270 14349288 AGTAAACGAATCCGGTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32971 FBgn0052971 FBtr0114463 3 1 3 184 2L 14274925 14277315 TCTTGACCAATCTCAGTGG 58 14277524 14277542 GACGTTATCCTTTAGCTGC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG6180 FBgn0032453 FBtr0080398 2 1 1 65 2L 12708023 12708041 GTAGTTCCGGATGTGATCG 59 12708070 12708088 AATATCGCCGGGATATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 vir-1 FBgn0043841 FBtr0100125,FBtr0080390,FBtr0080389 3 3 4 60 2L 12403985 12404005 TCAGACATGAGGAAGATTTGG 59 12403945 12403964 TCTTTCCTCTCCAAGTACTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12517 FBgn0032311 FBtr0080144 1 1 1 61 2L 10870277 10870295 TCATCTGTATCGAACGCTC 59 10870320 10870338 ATTATCCGTCCAGGATTCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 UbcD2 FBgn0015320 FBtr0080115 1 1 2 89 2L 10766456 10766474 TACTCAAGGACAACTGGTC 58 10766270 10766403 GATCGGCTGGATTACAGTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG17105 FBgn0032280 FBtr0080106 1 1 1 229 2L 10681104 10681122 TATCCTGGTATACACGGTG 57 10681315 10681333 TAACCAACTGAGTTTGCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Klp31E FBgn0032243 FBtr0080018 3 1 1 81 2L 10416873 10416956 GCGAATATGACTACATCTGTG 58 10416996 10417017 GGCTTATCTTGCTTTCATAGTC 59 NA Drosophila melanogaster 50 Bsg FBgn0011219 FBtr0079569,FBtr0079573,FBtr0079566,FBtr0079572,FBtr0079571,FBtr0079568,FBtr0079570,FBtr0079567,FBtr0079574 3 9 9 95 2L 8107088 8107106 TTCAAATACAGCCGTTGTG 58 8107165 8107247 GTTACATTGGCAAAGGTCC 59 NA Drosophila melanogaster 50 CG8902 FBgn0031886 FBtr0079424 3 1 1 178 2L 7065112 7065130 TCTGGAACTCATTGAGCAG 59 7064895 7064913 GATGTTCATTCGTCACCTG 58 NA DesignNoJunction Drosophila melanogaster 50 nrv2 FBgn0015777 FBtr0100381,FBtr0079383,FBtr0079382,FBtr0079381,FBtr0100382 1 5 5 84 2L 6791573 6791591 TTTGATCTGGTACAAGGGC 59 6791313 6791525 TACTTTGTACACCGCAAGG 59 NA Drosophila melanogaster 50 Sec61alpha FBgn0086357 FBtr0079266 2 1 1 71 2L 6480071 6480091 GGAAGTTATCAAACCGTTCTG 59 6479049 6480038 TCCCTGAATTGGATCTTGC 59 NA DesignRelaxed Drosophila melanogaster 50 Gpdh FBgn0001128 FBtr0079147,FBtr0079148,FBtr0079146 2 3 3 106 2L 5947158 5947244 GGTCTGGAGGACAAATTCC 59 5947314 5947332 ATATGCTCAGGGTGATTGC 59 NA Drosophila melanogaster 50 mRpL27 FBgn0053002 FBtr0077451 2 1 1 269 2L 4459374 4459393 GTACGAGGAATAAGAAGGGC 59 4459066 4459084 TCTTGTAGATGTTCTGGCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG2975 FBgn0031468 FBtr0077619 2 1 1 97 2L 2842009 2842027 GTCGCTTCATTCCTTTCTC 58 2842088 2842168 GTCACTGGAGTTATCTGGG 59 NA Drosophila melanogaster 50 CG4271 FBgn0031409 FBtr0077756 1 1 1 60 2L 2285201 2285220 ATCTTATTTGCACGAAGCTC 58 2285243 2285261 AGAAGTCAAACTTTGCCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cdlc2 FBgn0026141 FBtr0077925,FBtr0077924 2 2 2 61 2L 1344751 1344770 TTCGACAAGAAGTACAACCC 59 1344794 1344812 ACATAGGATCCGAAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pkg21D FBgn0000442 FBtr0078042 2 1 1 108 2L 788168 788250 GGATTTCAGTGATAAGCAGC 58 788079 788100 CTTGGAGTACATTGAATCTACC 58 NA Drosophila melanogaster 50 CG2794 FBgn0031265 FBtr0078067 1 1 1 60 2L 565753 565771 AGATATGTTCATAGCCGGT 57 565793 565813 GCGTATGTTCTTGGTTAACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Spp FBgn0031260 FBtr0078080 1 1 1 159 2L 543548 543566 TGATTGCCTACTTCCTTGG 59 543341 543425 TCTTCATAGGCAAAGAGCA 58 NA Drosophila melanogaster 50 CG4213 FBgn0031251 FBtr0078093 3 1 1 145 2L 398862 399864 CCTACATCAAACTAAAGGACCT 59 398738 398756 TTTGGTTAGCTCCAAGCTC 59 NA Drosophila melanogaster 50 CG13693 FBgn0031235 FBtr0078126 3 1 1 246 2L 233136 233217 GCGGATATTGAAAGAAATGC 57 233423 233444 TGGTTAACTTCATAGTTCCCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Mst84Dd FBgn0004175 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-A2589b FBgn0086024 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG12565 FBgn0031180 FBtr0077214,FBtr0077215 2 2 2 103 X 21313521 21313539 GGATTAGGAACGGGAACTG 59 21312769 21313456 GAAACGGTAAGATCAATGCAG 59 NA Drosophila melanogaster 50 l(1)G0004 FBgn0027334 FBtr0077298 2 1 1 85 X 20263097 20263115 AAATTCACCATCGAGAACG 58 20263164 20263182 TGAATGTTCTGGTAGCTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 OdsH FBgn0026058 FBtr0074461 3 1 1 170 X 17705779 17705799 AATGATTGTACAGAGTCCTCG 59 17705931 17707351 GAACCAAACCGCTATACGA 59 NA Drosophila melanogaster 50 CG10597 FBgn0030832 FBtr0074398 2 1 1 61 X 17125009 17125028 AAGGTAAGAAATCGAGGAGC 59 17124967 17124987 GAAGGATATCGTTAACGAGAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9699 FBgn0030772 FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369 3 6 7 84 X 16588098 16588116 CATTGAGGCGGTTAAATGC 59 16580759 16580777 AAAGCCTATGTAATCGCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG8916 FBgn0030707 FBtr0074126 2 1 1 82 X 15818119 15818138 GGTTTCGCTACAGAATTCAC 59 15818181 15818259 ACGATGGATCGTTATATGTGG 59 NA Drosophila melanogaster 50 Myb FBgn0002914 FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169 1 4 5 82 X 15749875 15749893 GGTCTATAATCGCGTTGGA 59 15749747 15749829 GTCCAAGTTGACTCTTGTG 58 NA Drosophila melanogaster 50 Tango10 FBgn0030330 FBtr0073553,FBtr0073552 2 2 2 62 X 11616426 11616570 AGAGGAGCGATTTAAGATCG 59 11616595 11616613 CGGATGTGCATAATCTGGT 59 NA DesignRelaxed Drosophila melanogaster 50 CG2446 FBgn0030328 FBtr0073615,FBtr0073618,FBtr0073619 1 3 5 80 X 11607718 11607802 GCAGGAGACTAAACACCAG 59 11607656 11607677 CTCCTTATCGTGGTATCTATCG 59 NA InUTR Drosophila melanogaster 50 mxc FBgn0005639 FBtr0071312 2 1 1 60 X 9139429 9139447 ATTTAAGGCTGAAATGCGC 59 9139471 9139489 GTCGCCCTCCTTAATATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Moe FBgn0011661 FBtr0071275,FBtr0071272,FBtr0071276,FBtr0071269,FBtr0071277,FBtr0071271,FBtr0071273,FBtr0071278,FBtr0071270,FBtr0071274 1 10 10 163 X 8768353 8768371 GATGAGAACGAGAACGAGG 59 8768131 8768227 TCTTGTTTCAGAGCCTTGAG 59 NA Drosophila melanogaster 50 swa FBgn0003655 FBtr0070922 1 1 1 262 X 6258369 6258387 ATCTTTGGACTTTAGCAGC 57 6258037 6258055 CAAAGTAGTACATGCCCTC 57 NA DesignNoJunction Drosophila melanogaster 50 rux FBgn0003302 FBtr0070889 3 1 1 60 X 5930602 5930620 CTCCCTGAAGTATGTGGAG 58 5930560 5930580 GCCGTAGATATGTTCATTACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rala FBgn0015286 FBtr0070584,FBtr0070583,FBtr0070582 1 3 3 95 X 3603936 3603954 GATAACTACTTTCGCAGCG 58 3602942 3603880 GATTTGTTCTCTGAATTCCTGG 59 NA Drosophila melanogaster 50 CG17707 FBgn0025835 FBtr0112918 3 1 1 87 X 42505 42590 AGTCTAAATCGATCGATGCT 58 42437 42458 CAAGGGACAAGATAGATTTGAC 58 NA Drosophila melanogaster 50 eIF4G FBgn0023213 FBtr0089243,FBtr0112904 2 2 2 85 4 941816 945718 CCTATCACTGATGAAACGGA 59 941750 941768 GGATGGGTCTGATTAGGTG 59 NA Drosophila melanogaster 50 gro FBgn0001139 FBtr0084965,FBtr0084962,FBtr0084964,FBtr0084966,FBtr0084963 3 5 5 104 3R 21870081 21870172 CGCCATTATGTTATGTACTACG 59 21870236 21870255 AAGTAGCTGGTTGATCAGTG 59 NA Drosophila melanogaster 50 spas FBgn0039141 FBtr0084533,FBtr0084534 1 2 2 68 3R 19866502 19866520 AATGGTCATTCTACCCTCC 58 19866610 19866628 AATAAACCCTTAGCCGGTG 59 NA DesignNoJunction Drosophila melanogaster 50 tsl FBgn0003867 FBtr0084164,FBtr0084165 1 2 2 80 3R 17604914 17605282 ATCTATAGGAATCTGAGTGGC 58 17604854 17604872 CTCCATGTGAAAGTCTCCA 58 NA Drosophila melanogaster 50 CG15499 FBgn0038891 FBtr0084124 2 1 1 183 3R 17357748 17357766 ACATTGATGAAGGTGTGGA 58 17357357 17357378 CCAGACAATTATGGATTAGAGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG31206 FBgn0051206 FBtr0083875 3 1 1 93 3R 15933212 15933302 TATGCTCATAATGTGCAGG 57 15933137 15933156 ATGTATCCTGAATAGGTGGT 57 NA Drosophila melanogaster 50 CG14300 FBgn0038643 FBtr0100288 2 1 1 109 3R 14519197 14519215 ACCTATACGCATCACTTCG 59 14519106 14519124 TTGAGCAGATGCATGTAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31251 FBgn0051251 FBtr0083484 2 1 1 158 3R 13510001 13510019 CATTTCAATTCAGGCCCAG 59 13509802 13509879 AGCTCCTTTGCTTTATCGT 59 NA Nonspecific Drosophila melanogaster 50 CG14894 FBgn0038428 FBtr0083314 1 1 1 60 3R 12268267 12268285 GAAGCCTTAGACATTTGCC 58 12268225 12268243 TGTTTCCGTAGAGAACTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cad88C FBgn0038247 FBtr0082965 3 1 1 82 3R 10465251 10465357 TTCACGAGATACGTATAGAAGC 59 10465397 10465418 CCGAACATAAATCGTTAGATCC 59 NA Drosophila melanogaster 50 rin FBgn0015778 FBtr0082799,FBtr0082797,FBtr0082798,FBtr0082796 1 4 5 60 3R 9476209 9476538 CAACAAGGGTGACTTTGAG 58 9476561 9476580 CTGATTATCACCGAACTGCT 59 NA DesignRelaxed Drosophila melanogaster 50 Rbp1 FBgn0010252 FBtr0082278,FBtr0082277,FBtr0082276,FBtr0082275 3 4 4 76 3R 6610338 6610356 TATAGGGAGTGGGACTTGG 59 6610396 6610414 CCTTCTATCTCGTGCTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14691 FBgn0037829 FBtr0082314 3 1 2 86 3R 6579571 6579763 ACATACTGAAGGTGTTCCT 57 6579503 6579521 AAACCATCATCGTTACCAG 57 NA Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210 2 5 8 81 3R 5834566 5835033 CTACGAAGGTTCAAACCGA 59 5834503 5834521 GAGTCGGTGGATATCTCAG 58 NA Drosophila melanogaster 50 CG33654 FBgn0053654 FBtr0091633 1 1 1 75 3R 5408713 5408733 GGAGCTATAAGTACTTAACGC 58 5408566 5408584 AACATGAAGGGTCTGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG9396 FBgn0037714 FBtr0082111 2 1 1 85 3R 5397004 5397022 ATGGACTTATCAAGGCCTG 59 5396879 5396956 GAATATGGTCTTGGGTCCTG 59 NA Drosophila melanogaster 50 Hrp59 FBgn0037701 FBtr0082123 3 1 1 91 3R 5333096 5334020 TTGCTAATCTGGACTACAAGG 59 5333025 5333043 GTCCAGTGAAAGGTCTACG 59 NA DesignRelaxed Drosophila melanogaster 50 Or85c FBgn0037591 FBtr0081899 2 1 1 88 3R 4337630 4337648 TATAGCTCGACCTCAGAGG 59 4337500 4337579 ATACTTGAAGAAGGTCCGTC 59 NA Drosophila melanogaster 50 CG17816 FBgn0037525 FBtr0113203 2 1 3 153 3R 3691470 3693768 GAAAGAAGCTACTCTACATGAG 58 3691068 3691086 CGTGATGAAGTGGTTTAGG 58 NA Drosophila melanogaster 50 CG17917 FBgn0037431 FBtr0081709 2 1 1 67 3R 2167823 2167842 ATGTAATACACATCGGACCG 59 2168072 2168090 ACAATGTGCTGCTAAATGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2911 FBgn0037350 FBtr0113194,FBtr0078740 1 2 2 62 3R 1448390 1448408 GCCCGACTTCTATGAACTC 59 1448346 1448364 CTGCACTTGATCTCATCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 slif FBgn0037203 FBtr0078555,FBtr0078556,FBtr0078557 1 3 3 82 3L 22885585 22885671 AATCTTTGCGTCCATAATGG 58 22885716 22885734 TGTATGCTAACAGGGTTCC 58 NA Drosophila melanogaster 50 Las FBgn0029158 FBtr0078228 3 1 2 105 3L 20424482 20424557 GATCGAGATGATTTGCCAG 58 20424340 20424358 AATCAGGTACTAGGCACTC 58 NA Drosophila melanogaster 50 CG12310 FBgn0036467 FBtr0075665 3 1 1 61 3L 15043732 15043750 ATTCGACTAGCAATGATGC 57 15043689 15043708 ATCATCAGAAGATTCCTCCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32105 FBgn0052105 FBtr0075953 3 1 1 156 3L 12328103 12328122 AGATAGCTCCGGTTATTTGG 59 12328315 12328333 CAACTGGTCAAAGTTGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Mnf FBgn0036134 FBtr0076225 2 1 5 108 3L 11109260 11109278 TGGCAGAATTCCATACGTC 59 11108904 11109000 GCGAATTATCCATGTGACTG 59 NA Drosophila melanogaster 50 CG16711 FBgn0036032 FBtr0076397,FBtr0076396 3 2 2 60 3L 9699317 9699338 ACTAAGAATCTGAAGGATCTGC 59 9699358 9699377 CACTGCTACAATTCTGTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33171 FBgn0053171 FBtr0089838 3 1 2 185 3L 7042020 7042038 AAGAATCTGCTCAACAGTC 57 7043787 7044351 ATTCTGTACCCTGGATGAG 58 NA Drosophila melanogaster 50 Prat2 FBgn0041194 FBtr0076946,FBtr0076945 3 2 2 60 3L 6905422 6905440 ATATCCCTGCTACATGGGT 59 6905380 6905401 CAATTTGTTGGCTATTAGCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF4E-4 FBgn0035709 FBtr0076963 3 1 1 132 3L 6658271 6658289 TCTTTGTTCAAGAAGGGCA 59 6658025 6658126 GTATGAGTAGCACATCTAACCA 59 NA Drosophila melanogaster 50 CG8398 FBgn0035708 FBtr0076980,FBtr0076979,FBtr0076981,FBtr0076978 1 4 4 92 3L 6609616 6609634 AAGCACTTCATTCCCTACC 59 6609687 6609778 GCAGTAGATTATCAGATCTGGA 58 NA Drosophila melanogaster 50 sif FBgn0085447 FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713 2 5 8 95 3L 5692112 5697030 GTTCCTTCGCAAGATTTCG 59 5697088 5697107 TTATATGGTGACGCCATGAC 59 NA Drosophila melanogaster 50 CG9149 FBgn0035203 FBtr0072667 1 1 1 60 3L 1303941 1303959 CGAGGGTATACAGAAGCTC 58 1304043 1304061 ATTGCCAGCGGTTATAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Pk61C FBgn0020386 FBtr0072467,FBtr0072471,FBtr0072464,FBtr0072469,FBtr0072470,FBtr0072465,FBtr0072468,FBtr0072466 2 8 8 87 3L 142804 142822 ATATCGCGACTGCTTAGTG 59 142873 142954 GGTCGAAAGAGTTCTTTGC 59 NA Drosophila melanogaster 50 Orc4 FBgn0023181 FBtr0072425 1 1 1 65 2R 20683710 20683728 TCTCAGTCCTAGAGCTGTG 59 20683663 20683681 AATCGCGATCGTAAATCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3860 FBgn0034951 FBtr0072201 1 1 1 80 2R 19881986 19882066 CATGTGGAAAGAACTGAGC 58 19881924 19881943 GATGCAGTTCTTCAGAATGG 58 NA Drosophila melanogaster 50 betaTub56D FBgn0003887 FBtr0086536,FBtr0086538,FBtr0086539,FBtr0086537 3 4 4 68 2R 15335672 15335691 TCTCTACGATATCTGCTTCC 58 15335623 15335641 ACAAGATGGTTCAGGTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Vha100-3 FBgn0028669 FBtr0086602 2 1 1 60 2R 14798420 14798438 TTAACATCTACGACTGCCC 59 14798378 14798398 CTCAGCTCCTTAACCTTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ote FBgn0003022 FBtr0086768 2 1 1 60 2R 14164017 14164038 CGAGAGGAGAATTATCTTAAGG 57 14163978 14163996 CCTCTTCTTCATCGGACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eIF3-S9 FBgn0034237 FBtr0086941 3 1 2 84 2R 13424075 13424209 AGTGATGAAGATCTGCTGG 59 13424257 13424275 TATTGTCCACTACCACCAC 58 NA Drosophila melanogaster 50 CG8060 FBgn0034113 FBtr0087178 1 1 1 80 2R 12206972 12207037 CCACATTGATCAAGCTTCC 58 12206910 12206929 CCTCGTTGTAAATTACCGTG 58 NA Drosophila melanogaster 50 CG30084 FBgn0083919 FBtr0100387 1 1 6 197 2R 11664700 11664718 TACTCCAATGGAAACTCCA 57 11660748 11661328 TACATTACGACCTTGTTGG 57 NA Drosophila melanogaster 50 Asx FBgn0000142 FBtr0100154,FBtr0087493 2 2 2 81 2R 10395745 10395763 GCATATCCAGGATGTCGTC 59 10395808 10395899 CTGGCCGATATCATTTCCA 59 NA Drosophila melanogaster 50 CG17385 FBgn0033934 FBtr0087517 1 1 1 250 2R 10298415 10298435 CTGGTTAACCTCAAGAAACAC 59 10297879 10297897 AAGGTATCAAAGATGGCCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8862 FBgn0033690 FBtr0088012 1 1 1 60 2R 8065778 8065798 GAGAACAATGTAAGCTTGACG 59 8065738 8065759 ATCCATACTTCATGATCTGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8298 FBgn0033673 FBtr0088043 2 1 2 148 2R 7876824 7876898 CGCTTTCTGATATACTCAACG 58 7877008 7877082 TTATAGGCGGTCTCTATGC 58 NA Drosophila melanogaster 50 CG8234 FBgn0033644 FBtr0088076,FBtr0088075 3 2 2 91 2R 7564735 7564753 TCTTTCCACGATCATCGTG 59 7564807 7564882 ACAGAAGAATCTTTCTGCCC 59 NA Drosophila melanogaster 50 CG13211 FBgn0033613 FBtr0088173 3 1 2 71 2R 7182394 7182412 CTCCAGTTCCATAGTGTCG 59 7182269 7182288 TACAGCTTGTAGCCAAAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1773 FBgn0033439 FBtr0088467 2 1 1 89 2R 5594446 5594539 CTTTAAAGATCACATACGACCC 58 5594589 5594607 ACAGCCATGTAGGATTGTC 59 NA Drosophila melanogaster 50 Aldh-III FBgn0010548 FBtr0088994,FBtr0088993,FBtr0088988,FBtr0088996,FBtr0088989,FBtr0088992,FBtr0088990,FBtr0088991,FBtr0088995 1 9 9 157 2R 3355133 3355208 AGAAGTTGTCATCAGCTCG 59 3354994 3355012 GTAGTAGTTGGTCAGCACC 59 NA Nonspecific Drosophila melanogaster 50 Tsp42Eb FBgn0042086 FBtr0086177,FBtr0086176 2 2 2 67 2R 2887137 2887155 CAATACGGACCTGATTCGA 59 2887186 2887204 ACATGATGAAGATGCCCAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp42Ea FBgn0029508 FBtr0086172,FBtr0086171,FBtr0086173 1 3 3 101 2R 2890569 2890588 GTAACGATGATCATCCTGGG 59 2890652 2890733 GATCGAGTACGTCATGGAC 59 NA Drosophila melanogaster 50 UbcD2 FBgn0015320 FBtr0080116,FBtr0080115 2 2 2 127 2L 10766392 10766410 GCTCACAGACTGTAATCCA 58 10766108 10766126 AACTTACGCATCATGTTGC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG5676 FBgn0032200 FBtr0080086 3 1 1 80 2L 10255129 10255147 TAAGAGCGTGGATAAGCTC 58 10255004 10255088 TATCTTTCGGTCTTATCCTTCC 59 NA Drosophila melanogaster 50 CG4592 FBgn0032162 FBtr0079879 2 1 1 84 2L 9922136 9922154 TTATTCTGGACTCGGTTCC 58 9922202 9922275 GTGAGTGTCCATTGATTGC 59 NA Drosophila melanogaster 50 CG4036 FBgn0032149 FBtr0079870 3 1 1 60 2L 9791082 9791100 CATGGTCCTACTGTATCCA 57 9791124 9791142 TGGACATGATTGGTATCCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Snoo FBgn0085450 FBtr0112719,FBtr0112717,FBtr0112721,FBtr0112718,FBtr0112720 2 5 5 60 2L 7975303 7975321 GCACGACTATCTTCATGTG 58 7975261 7975282 GAGGATGATCTGGTATTTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LanB1 FBgn0002527 FBtr0079491,FBtr0079490 1 2 2 60 2L 7817640 7817737 CCTGTATAGATTGTCAGGACTC 59 7817755 7817776 TATCCATCTAAACAGCTGTCAC 59 NA DesignRelaxed Drosophila melanogaster 50 CG3430 FBgn0031875 FBtr0079350 2 1 1 92 2L 6958533 6958554 GACTACCAAGCAAATATTCCAG 59 6958671 6958691 CTTAGAATCGGCATTAATGGG 58 NA DesignNoJunction Drosophila melanogaster 50 CG31644 FBgn0051644 FBtr0079159 1 1 1 60 2L 5818140 5818158 TACTCCACTTACGATCCCA 59 5818098 5818117 ACGATAGGTATCCTCCACTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3714 FBgn0031589 FBtr0113020,FBtr0077480,FBtr0077483,FBtr0077482,FBtr0077479 1 5 6 114 2L 4190819 4192645 AGAAGTCATTCAGGAGTGG 58 4190723 4190741 GAAAGATAGGCCAGATCCC 59 NA Drosophila melanogaster 50 CG3609 FBgn0031418 FBtr0077791 1 1 1 122 2L 2372924 2372942 ATGTTAGTGCCACCTTGAC 59 2372761 2372840 AGTCAATCAGGGTAACTTGTC 59 NA Drosophila melanogaster 50 CG6847 FBgn0030884 FBtr0074505 2 1 1 105 X 17816100 17816119 TCAACTCCTTCAACGATCTG 59 17816185 17816264 TCGTCTTTCTCGGATATTTCG 59 NA Drosophila melanogaster 50 CG9699 FBgn0030772 FBtr0074367,FBtr0074366,FBtr0074370,FBtr0074368,FBtr0074365,FBtr0074369 2 6 7 80 X 16588098 16588116 CATTGAGGCGGTTAAATGC 59 16580763 16580781 CCTATGTAATCGCGATCCT 58 NA DesignNoJunction Drosophila melanogaster 50 CG9400 FBgn0030562 FBtr0073920,FBtr0112982 1 2 2 60 X 14183082 14183100 TTGGACATGCACAATTTGG 59 14183040 14183061 TTCTATAGCCATCCAGATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1444 FBgn0029975 FBtr0071091 1 1 1 80 X 7804810 7804898 GGAGATAGGCGATAAATACGG 59 7804937 7804958 ATCTTATCGTAGATCTCGTCAC 59 NA Drosophila melanogaster 50 mei-9 FBgn0002707 FBtr0070656 1 1 1 100 X 4210923 4211004 TTAATGATCTCCACCATGTACC 59 4210844 4210862 AAAGTCCATCCTGAGTTGC 59 NA Drosophila melanogaster 50 CG15578 FBgn0040905 FBtr0070659 1 1 1 60 X 4171820 4171840 AGTCCATTATAATGGTCCTGG 58 4171780 4171798 ATGTTCAGCTCTGTGTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Gr2a FBgn0027796 FBtr0114515 3 1 1 98 X 1347989 1348056 TCTCTATACGATCGTGGGA 58 1348118 1348136 TACTGTCCGTTGGAATCAC 59 NA Drosophila melanogaster 50 CG2241 FBgn0039788 FBtr0085680 2 1 1 77 3R 26409039 26409112 AACTCAACCTCAAGGTTCG 59 26408980 26408998 CAACCTCCGCAATATAGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4963 FBgn0039561 FBtr0085266 1 1 1 82 3R 23770726 23770806 CAACTACGTGATTTCGGGA 59 23770662 23770680 GCATACGCTGTTTGATCAC 59 NA Drosophila melanogaster 50 CG6330 FBgn0039464 FBtr0085084,FBtr0085085 3 2 2 109 3R 22776723 22776805 TCCCATGAGTTTACCATTCTC 59 22776634 22776652 GTATCGTACGGATCATCGG 59 NA Drosophila melanogaster 50 bai FBgn0045866 FBtr0084758 1 1 1 204 3R 20865337 20865426 ATCATCGACTACATTGCAC 57 20865658 20865676 CTTCGTAGCTCTTGGTCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Gr93b FBgn0045470 FBtr0084160 1 1 1 60 3R 17668955 17668976 GGTTCCTGTTAACTTTAGTGTG 59 17668916 17668934 TGTGTTATCATTCCCGTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 eRF1 FBgn0036974 FBtr0078174,FBtr0078178,FBtr0078175,FBtr0078173,FBtr0078176,FBtr0078177 2 6 6 81 3L 20344340 20344433 AATTTCTCAGGATACTGGCA 58 20344477 20344495 GAGAGTCTCTACAGAGCCA 59 NA Drosophila melanogaster 50 CG32228 FBgn0052228 FBtr0074836 2 1 1 60 3L 20261560 20261580 CTTTACACTCTGGAAAGTAGG 57 20261600 20261620 GGAAACTAGACATACTACTCG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PDCD-5 FBgn0036580 FBtr0075483 2 1 1 180 3L 16224506 16224581 GGCACGACTTAATACCCTC 59 16224344 16224362 ATCGTATTTCACGGAGGAC 59 NA Drosophila melanogaster 50 CG6776 FBgn0035904 FBtr0076622 3 1 1 77 3L 8512063 8512612 GGTAAACATTTGGCCAAAGG 59 8512652 8512670 GAACCTCATGGAGTACAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8562 FBgn0035779 FBtr0076854 1 1 1 69 3L 7392425 7392443 CTCCTACGGCAACTATCTG 59 7392536 7392554 CAGATCCTCCCAATTCTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8549 FBgn0035714 FBtr0076943 3 1 1 60 3L 6746716 6746734 TCCGTTAAGATGAACAGGA 57 6746758 6746776 CCTTGAGAATCTTGATGGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34454 FBgn0085483 FBtr0112760 2 1 1 88 3L 232022 232040 AATACAATCCCATTTGCGG 58 231885 231970 TTGAATGTCAGCTCCACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 usnp FBgn0034913 FBtr0072236 3 1 1 66 2R 19731735 19731753 ATCACATCAGTTGGACGAG 59 19731687 19731705 CTTCAGACCAGTCAGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 rad50 FBgn0034728 FBtr0071829 2 1 1 185 2R 18311932 18312052 GGAAATTGGCAAAGTGCTC 59 18312198 18312219 CCCTTTGCTTAGTTAGATTCAC 59 NA Drosophila melanogaster 50 lolal FBgn0022238 FBtr0086777,FBtr0086779,FBtr0086776,FBtr0086778 3 4 4 123 2R 14042986 14043404 TCACAGATGTAACACTCGC 59 14042819 14042838 ATAATGATCGGATGCTTCGA 59 NA Drosophila melanogaster 50 CG33007 FBgn0053007 FBtr0087778 1 1 1 60 2R 9034172 9034190 AGCATCGATTATCACAGCA 59 9034130 9034149 GCTATCACTAGATCTTCGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14762 FBgn0033250 FBtr0088867 1 1 1 112 2R 3899227 3899245 TGCCAATGTGTTTAGTCAC 58 3899072 3899151 GATATTGCAGGTTCTCCTC 57 NA Drosophila melanogaster 50 CG30380 FBgn0050380 FBtr0088881 3 1 1 189 2R 3826957 3826977 TCCCAATGATCCTAAGATAGC 58 3826788 3826806 GAACCTATAGCCATAGGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tsp42Ed FBgn0029507 FBtr0086181 2 1 1 170 2R 2898305 2898323 ATGGTGTCCACCATAAAGG 59 2898084 2898171 CATGACCACAGAGTACGAG 59 NA Drosophila melanogaster 50 Cyp6u1 FBgn0033121 FBtr0086185 3 1 1 122 2R 2860229 2860305 CAAGTCCTCAATGAAACGC 59 2860125 2860143 TATCAGCACATTGTTGCCT 59 NA Drosophila melanogaster 50 TpnC4 FBgn0033027 FBtr0086075 3 1 1 83 2R 1394209 1394279 GGAACAATTGAGAATCCTTAGG 58 1394147 1394168 CTAGATACATCAGCATGTTCGA 59 NA Drosophila melanogaster 50 Bka FBgn0010520 FBtr0079874 2 1 1 60 2L 9895479 9895497 TAATGCACAGCTTAAACGC 59 9895520 9895539 TCGAATCTGATCCTTAAGCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rca1 FBgn0017551 FBtr0079342 2 1 1 115 2L 6853335 6853353 CTATTGGACGTACAACCAG 57 6853432 6853450 GAAGTTATATGGCGGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4291 FBgn0031287 FBtr0078034 3 1 1 120 2L 851656 851732 AACTGTGGAAGTGAAAGCA 59 851554 851572 GAACTTCTTGACTGGAGGT 58 NA Drosophila melanogaster 50 CG11377 FBgn0031217 FBtr0078104 1 1 1 99 2L 103427 103527 GTGTCATGATATTTCTGCGG 59 103589 103607 CTGGAAGATGACACAGGTG 59 NA Drosophila melanogaster 50 snoRNA:291 FBgn0065070 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 mir-276a FBgn0067718 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 tRNA:E4:62Ac FBgn0011853 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG32500 FBgn0052500 FBtr0077374 1 1 2 195 X 21494389 21494407 GGAGAGCTTGAAGTTCCTG 59 21493145 21493163 CTTAATCAGGCTCCACTCG 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG14476 FBgn0027588 FBtr0070062,FBtr0070061,FBtr0070059,FBtr0070060,FBtr0070058 3 5 5 96 X 21473853 21474022 AATCTATGGTCATGGAGCG 59 21473775 21473793 TACAACATTGGTCTCCGAC 59 NA Drosophila melanogaster 50 CG11710 FBgn0031115 FBtr0089643,FBtr0089642 2 2 2 118 X 20298918 20298936 GTACCGAGAGCTATATCCC 58 20298758 20298836 GCAGCTCGTATATCTTGTG 58 NA Drosophila melanogaster 50 Sh FBgn0003380 FBtr0089658,FBtr0089660,FBtr0089662 3 3 7 103 X 17824694 17824712 AATTACTTCTATCACCGCG 57 17824461 17824627 AAATGTTGACCTAGTGCAC 57 NA Drosophila melanogaster 50 CG18258 FBgn0030827 FBtr0074392 1 1 1 60 X 17106894 17106915 GAGTGATGATTGTCAGAATACC 58 17106936 17106954 AGTGTTCCATAACTGCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12995 FBgn0030826 FBtr0074401 3 1 2 63 X 17104096 17104114 GTATTTGCGGTCGAATGTG 59 17104051 17104070 ATTTACTGCTACCAACTGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32569 FBgn0052569 FBtr0074327 1 1 1 60 X 16632782 16632801 GCTATCACTATGATAGGCCC 59 16632824 16632842 CAGTTAGTTCGTTCCACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 para FBgn0003036 FBtr0111023 3 1 3 89 X 16380929 16383029 AACTACACAGATCACAAGGA 58 16380859 16380877 GAACACGATCATGAAGCTG 58 NA Drosophila melanogaster 50 CG3632 FBgn0030735 FBtr0112988,FBtr0112990,FBtr0112991,FBtr0112989 2 4 4 94 X 16195703 16195723 CACTATATCCTGTCCAGATGG 59 16195779 16195858 TTTCCTCACGTAGCTTGTG 59 NA Drosophila melanogaster 50 CG9066 FBgn0030703 FBtr0074166 1 1 1 90 X 15782422 15782440 GACCTGAGCGATTTAAGTG 58 15782275 15782293 ATAGCTTACCAACCAGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Gapdh2 FBgn0001092 FBtr0074112,FBtr0074113 1 2 2 68 X 15763118 15763139 GTCCTATGATGAAATTAAGGCC 58 15763167 15763186 TATCCCAGGATACCCTTCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32584 FBgn0052584 FBtr0074069,FBtr0074070 2 2 2 60 X 15469443 15469464 GATGTCAATAACTCACTTGAGG 58 15469404 15469422 TTTGAGCTTCTGATTCCAC 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12540 FBgn0030570 FBtr0073929 1 1 1 109 X 14390747 14390765 GATTCGTCGGTTTACTCGT 59 14390963 14390981 TCGTAGTACAAACACTGGG 58 NA DesignNoJunction Drosophila melanogaster 50 RpS15Aa FBgn0010198 FBtr0073792,FBtr0073793 1 2 4 121 X 13230407 13231550 CAAACAAATCCAGCCATGG 59 13230304 13230322 TTGATGATCACCTTGGAGC 59 NA Nonspecific, InUTR Drosophila melanogaster 50 CG32641 FBgn0052641 FBtr0073729 1 1 1 60 X 13078712 13078732 GAATAAACATCCACGAACGAC 59 13078753 13078772 CAGGACATTAAATGCTTCGT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12096 FBgn0030457 FBtr0073727 3 1 1 65 X 13054918 13054936 CTGAACATGCACTTTAGCG 59 13054965 13054983 CTTCTTAGTATGCGAGCCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12096 FBgn0030457 FBtr0073727 1 1 1 60 X 13054606 13054624 GTAATGGAGCTCCTAGTGC 59 13054648 13054666 GACGTTCCATGTAGGACAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1463 FBgn0030406 FBtr0073657 2 1 1 84 X 12504733 12504751 CACCAGGAGGATATGAAGC 59 12504613 12504631 GTTCCTGGTTTGGTTACAG 58 NA DesignNoJunction Drosophila melanogaster 50 regucalcin FBgn0030362 FBtr0073576,FBtr0073578,FBtr0073577,FBtr0073575 3 4 4 99 X 11910742 11910817 AGGTTAATCCCAACACTGG 59 11910880 11910898 TACAGGATGTCCAAGTTGG 58 NA DesignRelaxed Drosophila melanogaster 50 CG10353 FBgn0030349 FBtr0114452 3 1 2 105 X 11777211 11777229 GACGATGAGGTCTCTAGAC 58 11775926 11777144 GTCTGTATGTCCTTGATTTCC 58 NA Drosophila melanogaster 50 e(y)2 FBgn0000618 FBtr0073540 1 1 1 62 X 11470249 11470267 AGATACGCACCATTCTCAC 59 11470205 11470223 GTTAGGATTCGTCCTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(1)10Bb FBgn0001491 FBtr0073460 3 1 1 60 X 11218887 11218906 TGTCTGAAGGAGAAGATTGC 59 11218846 11218865 CGTATCCAGACTTCTTCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11122 FBgn0030266 FBtr0073481 2 1 1 157 X 11009668 11009686 GTTATTCAGCAGCTGTTCC 58 11009462 11009480 TTCTCATAGCCCTTCATCG 58 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 Myo10A FBgn0030252 FBtr0073388,FBtr0110979 3 2 2 80 X 10855468 10855486 GCTACTGCGGTGATATACC 59 10855529 10856138 ATTTGTGACAATGCATGAGC 59 NA Nonspecific Drosophila melanogaster 50 feo FBgn0030241 FBtr0073410 1 1 1 60 X 10747703 10747722 TGGGATCTCACACTTAAGAG 58 10747662 10747681 AGTCGTTGTAGTAGTTCGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sesB FBgn0003360 FBtr0073423,FBtr0073422,FBtr0073421,FBtr0073424 2 4 4 118 X 10676327 10676424 AAGTACAAGCAGGTCTTCC 59 10676227 10676245 GGGTAGACAAAGCACAGAG 59 NA Drosophila melanogaster 50 X11Lbeta FBgn0052677 FBtr0071493 1 1 1 115 X 10597390 10597408 TCTCTACGAGTTCTCGGAG 59 10597487 10597606 ACTGGATGTCAATGCTGTC 59 NA Drosophila melanogaster 50 CG1354 FBgn0030151 FBtr0089384,FBtr0089385,FBtr0089383,FBtr0089386 2 4 4 98 X 9674840 9674858 CCGAATACGATTCGATGCT 59 9674919 9675204 TCAAGGCCTCAATATCATGG 59 NA Drosophila melanogaster 50 CG34026 FBgn0054026 FBtr0100081 3 1 1 64 X 9428011 9428029 TTTCGTTGGTCTAGTGCAG 59 9428118 9428136 TCAACGCATTTAGGTTGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34450 FBgn0085479 FBtr0112756 1 1 1 63 X 9223972 9223990 AACTATTGCTGAGACAGCC 59 9223927 9223945 CAAGACTCCCTTTCGATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 His3.3B FBgn0004828 FBtr0071345,FBtr0071347,FBtr0071346 3 3 3 219 X 9048446 9048465 AGGATTTCAAGACCGATCTG 59 9048107 9048125 ACGACAGTGATCGAATCTG 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG7766 FBgn0030087 FBtr0071352,FBtr0114596 1 2 5 94 X 8995191 8995209 AGAAAGTCACGTGATGTGG 59 8993481 8995133 TCATAGTCGATATGCTGCG 59 NA Drosophila melanogaster 50 CG15327 FBgn0029967 FBtr0071144 2 1 1 91 X 7772695 7773887 TATCTTGGAACTTGTCACCT 58 7772623 7772642 TCGGTGGATATAGATTTCGA 57 NA Drosophila melanogaster 50 CG34417 FBgn0085446 FBtr0112706,FBtr0112707,FBtr0112704 1 3 5 86 X 6448796 6448951 CACCACCAGATAACAAGCT 59 6449001 6449019 TAGGAGGAGTAGTTGGTGG 59 NA Drosophila melanogaster 50 swa FBgn0003655 FBtr0070922 3 1 1 263 X 6258369 6258387 ATCTTTGGACTTTAGCAGC 57 6258036 6258054 TCAAAGTAGTACATGCCCT 57 NA DesignNoJunction Drosophila melanogaster 50 CG3566 FBgn0029854 FBtr0089869 2 1 2 193 X 6170573 6170591 TACGATGTGACCAAGTTCC 59 6170252 6170271 GATTCTCACCTAATTGGGCT 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 Mnt FBgn0023215 FBtr0070579,FBtr0070578 1 2 3 80 X 3593450 3593470 CTAAAGCAACTGAGCTTAAGG 58 3593512 3593727 CAGACAAACTGCTTTGTCG 59 NA Drosophila melanogaster 50 trol FBgn0001402 FBtr0091966,FBtr0091962,FBtr0091963,FBtr0091964 2 4 7 81 X 2386428 2386447 ATAGTAATGATCGCAGACCG 59 2384863 2386384 CCAACGTCGTTATTCTCCT 59 NA Drosophila melanogaster 50 phl FBgn0003079 FBtr0112818,FBtr0111025,FBtr0070401 3 3 3 147 X 2236245 2236263 CACAGATCACTCCAACTCC 59 2236374 2236460 CTCCGCCAGAATATTCCAG 59 NA Drosophila melanogaster 50 CG11596 FBgn0023522 FBtr0070318,FBtr0070320 3 2 3 119 X 1822604 1823045 CATGGACCAGATTGATATTCCA 59 1823125 1823143 CGTTCTAAGGCTCCTTCAG 59 NA Drosophila melanogaster 50 CG14803 FBgn0023513 FBtr0070310 1 1 1 60 X 1763892 1763910 CAAGTCACTCCACTTCCAG 59 1763999 1764017 ATAGAGTTCGTGGTATGCC 58 NA DesignNoJunction Drosophila melanogaster 50 MED18 FBgn0026873 FBtr0114454,FBtr0070308 2 2 2 114 X 1760520 1760607 TAGCAAAGGGCTATATGTTCC 59 1760683 1760701 TAGCTTTGTGAGATTGGCT 58 NA InUTR Drosophila melanogaster 50 CG32806 FBgn0052806 FBtr0070302 2 1 2 77 X 1683687 1683705 CCAACCCATACAATGTGGA 59 1684186 1684204 CATCTCATCACAAACCGAC 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG11412 FBgn0024362 FBtr0070208,FBtr0070210 1 2 3 89 X 1237284 1237304 CGCAACACTTATCTAATTCCC 59 1237355 1237373 GTATATCGAGTACGGCTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 su(w[a]) FBgn0003638 FBtr0110927 3 1 5 60 X 937506 937525 TTCTTAAATGCTTTCCAGCC 58 937545 937566 GAGCAGTCTTCTCTATGATAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR41604 FBgn0085814 FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269 2 4 4 105 U 3449415 3449487 TTTCTGAAGCAAAGTCCCA 59 3449556 3449574 GCTTGATACTGATCTCCCG 59 NA Drosophila melanogaster 50 CR41604 FBgn0085814 FBtr0114270,FBtr0114272,FBtr0114271,FBtr0114269 3 4 4 104 U 3449415 3449487 TTTCTGAAGCAAAGTCCCA 59 3449555 3449573 CTTGATACTGATCTCCCGC 59 NA DesignRelaxed Drosophila melanogaster 50 CR40613 FBgn0085756 FBtr0114206 1 1 1 60 U 9557379 9557398 TATCAAGAGTAGCCAAACAC 57 9557338 9557359 GATAGGGACAATATCATATGCG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40801 FBgn0085520 FBtr0113933 1 1 1 122 U 2929610 2929628 ATCTCCAATACCACCAACG 59 2929406 2929424 AATGGGTATCATCTGGCAC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG41328 FBgn0085618 FBtr0114062 3 1 1 142 U 1280596 1280614 GTCAGAGGGAATAAGACGA 58 1278917 1279388 TAATGTTTGTCCCTTGCAC 58 NA Drosophila melanogaster 50 CaMKII FBgn0004624 FBtr0100146 2 1 6 97 4 1065789 1065808 CTACTCTTGAAGACGATGAC 57 1060691 1064101 CAGTATCCTTATATCTTCAGGC 57 NA Drosophila melanogaster 50 ey FBgn0005558 FBtr0100396,FBtr0089236,FBtr0100395,FBtr0089235 2 4 4 80 4 731646 731664 GCCATGTGATATTTCTCGA 57 731705 733136 CTTCCTGTTTCATAATACCTCC 58 NA Drosophila melanogaster 50 Ephrin FBgn0040324 FBtr0089078,FBtr0089075,FBtr0089077,FBtr0089076 3 4 4 83 4 596940 597611 TTAACGGAAACGATGACCA 59 597655 597676 CACCACTATTATAGGTCAGCTC 59 NA Drosophila melanogaster 50 CG2165 FBgn0025704 FBtr0089130,FBtr0089131 1 2 5 112 4 363633 363651 GTATGAATCTGGGTGAGGA 58 350957 363558 GCCTATTACTTGTGTTTGCA 58 NA Drosophila melanogaster 50 snoRNA:Me18S-G423 FBgn0086052 FBtr0114328 2 1 1 61 3R 3901383 3901401 CAAATTATGTGTCGGCGTG 59 3901424 3901444 TCATATAAGGAAGGCAGTAGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Or85e FBgn0026399 FBtr0081896 1 1 1 60 3R 4460301 4460319 TCGAGCTCCTAATGTTCAC 59 4460259 4460277 CCAGATCGAATACTATGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1910 FBgn0022349 FBtr0085839,FBtr0085840,FBtr0085838,FBtr0085841 1 4 4 88 3R 27576298 27576374 TAATGTAAATGGTGAGCCC 57 27576425 27576444 TGGGATTGGTTTAGTTACAC 57 NA Nonspecific, InUTR Drosophila melanogaster 50 ttk FBgn0003870 FBtr0085827,FBtr0085825,FBtr0085829 1 3 6 128 3R 27554189 27558647 AACAGCACTTCCGTTACTC 59 27558739 27558757 GGAAATCGTTTCCGAAGGA 59 NA Drosophila melanogaster 50 Med FBgn0011655 FBtr0085815,FBtr0085816 3 2 2 84 3R 27440095 27440113 TATTATCTGGATCGCGAGG 58 27440161 27440235 GGTCAAACACCTTTATGCA 58 NA Drosophila melanogaster 50 CG11337 FBgn0039846 FBtr0113314 1 1 3 89 3R 27230175 27230193 AGGAATCCAAAGCAGTTCC 59 27229898 27230066 ATTCTGCCAGAACTGAAGG 59 NA Drosophila melanogaster 50 CG11314 FBgn0039800 FBtr0085723 3 1 1 99 3R 26570834 26570852 TAGACACCTGTACGATCCA 59 26570753 26570771 CTCATCTCACTGTTGTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2241 FBgn0039788 FBtr0085680 1 1 1 60 3R 26408510 26408528 TTCGAGAATGGTAAGGGAG 58 26408468 26408487 GAATATTATGGATGGAGCGT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Osi23 FBgn0039771 FBtr0085696 1 1 1 153 3R 26270014 26270094 AATGGCTTAAAGAGGGTGG 59 26269879 26269897 ATCCCATATCCAAAGTGGG 58 NA Drosophila melanogaster 50 Fer1HCH FBgn0015222 FBtr0085633,FBtr0085632,FBtr0085635,FBtr0085634 2 4 5 103 3R 26212311 26213196 AGATTTCAAGTGCTCCCTG 59 26212226 26212244 TGATCTCCTCCTGGATCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 hdc FBgn0010113 FBtr0085621,FBtr0085619 2 2 3 139 3R 26105940 26105958 GGAGGTCGAACTCTATTCC 58 26134965 26183984 CCTCGTCCTCAATCTTGAC 59 NA Drosophila melanogaster 50 kay FBgn0001297 FBtr0099988,FBtr0099991,FBtr0099989,FBtr0099990 2 4 4 174 3R 25617430 25617514 ACGACCGATACTTCAAGTG 59 25617652 25617670 GCGTATTTGAGGTATTCGC 59 NA Drosophila melanogaster 50 alph FBgn0086361 FBtr0085443 2 1 5 152 3R 25422981 25422999 AGATAACCGACTACGTGGA 59 25423186 25423507 ATGCATACAGTTCACATGGT 59 NA Drosophila melanogaster 50 Vha100-1 FBgn0028671 FBtr0085379,FBtr0085375,FBtr0085377,FBtr0085374,FBtr0085378,FBtr0085381,FBtr0085380,FBtr0085376 2 8 8 121 3R 24962130 24962213 ACCAATGATAAGCCCTACTC 58 24962294 24962315 CCCATGAACATATAGGTTTCAC 58 NA Drosophila melanogaster 50 CG1646 FBgn0039600 FBtr0113299,FBtr0085325,FBtr0085322,FBtr0113301,FBtr0113302,FBtr0113300,FBtr0085323,FBtr0085324 2 8 8 81 3R 24639526 24639610 TTGACAATGAGTCTGATGC 57 24639654 24639673 CAATATCCGTAGCAGTAAGG 57 NA Drosophila melanogaster 50 Mst98Cb FBgn0004171 FBtr0085278 2 1 1 108 3R 24118606 24118627 CTCTTTCGGTTTATTCTAGTCG 58 24118696 24118714 ATTGTAGCACTTGGGTGAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG12428 FBgn0039543 FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236 1 5 5 80 3R 23531106 23531201 GGAGTACATGCTGAAGAGTC 59 23531045 23531065 TTGATGCTGGACTTTCTAGTC 59 NA Drosophila melanogaster 50 CG14264 FBgn0039512 FBtr0085165 2 1 1 82 3R 23166721 23166739 TCTTATGTACGCCTGTCAG 58 23166965 23166983 GTAATGCGAGAGTGTAGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 amon FBgn0023179 FBtr0085048 1 1 1 113 3R 22526619 22526637 AAATCCACATATACAGCGC 57 22526453 22526542 CATTTCGACCCTCATTGAC 58 NA Drosophila melanogaster 50 CG14242 FBgn0039443 FBtr0085034 3 1 1 60 3R 22462734 22462752 AACAGGTGGTGTTTATTCG 57 22462776 22462794 AGTTGCTTAGCAGTCAGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33970 FBgn0053970 FBtr0100012 2 1 2 104 3R 22175802 22175820 CATCTGGGATCATTTGGTG 58 22175888 22181332 AGTAGACCGATCATATGCG 58 NA Drosophila melanogaster 50 CG34129 FBgn0083965 FBtr0110870 3 1 1 60 3R 22016590 22016608 CGATAGGGAGAACTATGCT 57 22016548 22016568 CTGGTAGATAAATTTCTCGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8932 FBgn0039390 FBtr0084944 3 1 1 109 3R 21736612 21736630 ATCGTCATCTATGTGCCAG 59 21737020 21737039 AAATTCCGCTGAATAACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 LpR1 FBgn0066101 FBtr0113480,FBtr0084925 1 2 6 155 3R 21575100 21577790 TATAAATGAGGCCACTTGCT 59 21573920 21573938 TATTCATCCGGTGAACAGG 59 NA Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113386,FBtr0113387,FBtr0113384,FBtr0084928,FBtr0113388,FBtr0113385,FBtr0084927 3 7 7 111 3R 21527327 21527346 TAACCAGGTCCACAAATCTG 59 21527166 21527253 GACATAGATGACGCTTGCT 59 NA Drosophila melanogaster 50 Nmnat FBgn0039254 FBtr0084749,FBtr0084750 2 2 2 119 3R 20771798 20771877 CAAGTATCAGAGCAACATTACG 59 20771957 20771975 ACCAGATCGTCTAGAAGGT 59 NA Drosophila melanogaster 50 HdacX FBgn0051119 FBtr0084734 2 1 1 65 3R 20681264 20681282 TAATGATTGTGGACCTGGA 57 20681217 20681235 CTGCCACGTTATTGAAGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 KrT95D FBgn0020647 FBtr0084508,FBtr0084507,FBtr0084506 2 3 3 104 3R 19824628 19824646 GGATAAGGAGCGTGATCTC 59 19824481 19824560 TCAATGTACACTCGCAGTG 59 NA Drosophila melanogaster 50 CG5857 FBgn0039125 FBtr0084491 2 1 1 60 3R 19751759 19751778 AGTGTATATGACTCAGGCTC 58 19751800 19751819 ATATGGATCCTCTTTGAGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17380 FBgn0039077 FBtr0084428 2 1 1 90 3R 19229100 19229118 GCTGATGAAGACGAATACC 57 19229028 19229048 TCATTACCGAACCTTCTTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cnc FBgn0000338 FBtr0084392 1 1 7 81 3R 19023686 19035071 CGAAACTGGTGAATACATACG 59 19023625 19023644 GTCTTGAAGCGGAAATTCAG 59 NA Drosophila melanogaster 50 CG31158 FBgn0051158 FBtr0113395,FBtr0113396 2 2 2 80 3R 18430801 18430882 CAAGCTGATGCTGAAAGAG 58 18430926 18430944 TTCTTGTGCTCGTTAAGCT 59 NA Drosophila melanogaster 50 CG15499 FBgn0038891 FBtr0084124 1 1 1 182 3R 17357748 17357766 ACATTGATGAAGGTGTGGA 58 17357358 17357379 CAGACAATTATGGATTAGAGCC 58 NA DesignNoJunction Drosophila melanogaster 50 Sep2 FBgn0014029 FBtr0083945 3 1 1 81 3R 16412750 16412768 CGGATACCATTTCCAAGGT 59 16412687 16412705 TAGATGTGCACTCCATTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4783 FBgn0038756 FBtr0083823 2 1 1 60 3R 15774325 15774345 ATTAGATCCGAAAGTGTGGAG 59 15774367 15774385 ACCAGAAATCGTATGTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 endoA FBgn0038659 FBtr0083699,FBtr0083698 2 2 2 63 3R 14733023 14733041 AGGCCAACCAGTATATGAC 58 14733068 14733086 AAGTCCATGTCCAGTTTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31226 FBgn0051226 FBtr0083675,FBtr0083676 1 2 2 133 3R 14677256 14677274 ACCATTTAACTCCTGGTGC 59 14677088 14677159 TTGCAAGAGATGTTCAGCA 59 NA Nonspecific, InUTR Drosophila melanogaster 50 cpo FBgn0000363 FBtr0083534,FBtr0083536,FBtr0083535,FBtr0083537 1 4 6 169 3R 13832727 13832810 CCTATGAGGGCTATGAAGG 58 13834616 13834634 TTCCAAGCGAATTGTTTGG 59 NA Drosophila melanogaster 50 CG34053 FBgn0054053 FBtr0113472 1 1 1 60 3R 13230368 13230388 TGTCTACTAGACATGTATGCC 58 13230271 13230289 CTATACGTGGTTCGTTGAC 57 NA DesignNoJunction Drosophila melanogaster 50 Dad FBgn0020493 FBtr0100160,FBtr0083394,FBtr0083393 3 3 3 82 3R 12894609 12894696 TTTGAAACCAATAGGGCTG 57 12894741 12894760 TTAATGCTGAAGTAGTCGAC 57 NA Drosophila melanogaster 50 srp FBgn0003507 FBtr0083216,FBtr0083215,FBtr0100595 2 3 3 89 3R 11827968 11827986 TGGAAAGTGGTTCATTGGT 59 11828036 11828140 GTGGTTTCATATCGTCATTGAC 59 NA Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204 3 6 8 198 3R 11782022 11785052 GACTGATGAGGAACAATGG 57 11785214 11785232 CTCCCAATCGTTGTTAGTC 57 NA Drosophila melanogaster 50 CG5044 FBgn0038326 FBtr0083090,FBtr0083091 3 2 2 97 3R 11183940 11183959 GGGATTCTAGAGAATCTGCA 58 11184283 11184301 AACGTAACCTTCATCGAGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14866 FBgn0038315 FBtr0083081 1 1 1 60 3R 11143392 11143410 CAAGGGTCTAAACTCCCAC 59 11143433 11143452 CATGATCTCCTCATTCTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Tm2 FBgn0004117 FBtr0083078,FBtr0083079 1 2 3 115 3R 11138921 11138939 TCCATCAAGTTGAAGGAGG 58 11140259 11140277 TACCTGTCCTTGTTGATGC 59 NA Nonspecific, DesignNoJunction Drosophila melanogaster 50 CG7987 FBgn0038244 FBtr0082978,FBtr0082979 2 2 2 76 3R 10400293 10400311 GGTAATCACAGACGACTGG 59 10400170 10400188 TAATCCCAGCTATCTGCTC 58 NA DesignNoJunction Drosophila melanogaster 50 B52 FBgn0004587 FBtr0082803,FBtr0082807 3 2 8 88 3R 9490578 9490596 CCACAGTTACTAGGCAGAC 59 9490648 9491184 CCTTGAGATCTTAATGCGC 58 NA InUTR Drosophila melanogaster 50 yrt FBgn0004049 FBtr0082793,FBtr0114376,FBtr0114375 1 3 4 80 3R 9257183 9257201 ATTGTCAAAGATCCATCCC 57 9257060 9257139 CTTGTTGATAGTCACCCTG 57 NA Drosophila melanogaster 50 yrt FBgn0004049 FBtr0082793,FBtr0114376,FBtr0114375 1 3 4 80 3R 9257183 9257201 ATTGTCAAAGATCCATCCC 57 9257060 9257139 CTTGTTGATAGTCACCCTG 57 NA Drosophila melanogaster 50 CG5999 FBgn0038083 FBtr0082659 3 1 1 60 3R 8568217 8568236 CAAGCTATTCATCAACCACG 59 8568176 8568194 CTTTCCATGGTACTGGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Men FBgn0002719 FBtr0082660,FBtr0082661 3 2 2 179 3R 8539997 8540015 TCTTGGTATTGCCAACCTG 59 8539780 8539798 AAAGTATCGATGGGTTCGT 58 NA DesignNoJunction Drosophila melanogaster 50 Octbeta3R FBgn0053959 FBtr0099995,FBtr0099997,FBtr0099998,FBtr0099996,FBtr0099999 1 5 5 80 3R 8338734 8338873 CTTTCTGTGGTATGTCATCAC 58 8338674 8338692 ATCCAGAATAACACCACCA 58 NA Drosophila melanogaster 50 Pros25 FBgn0086134 FBtr0082590 2 1 1 193 3R 8257374 8257477 GCATTATAGCTTCCAACGG 58 8257634 8257652 GTAGGTCAGGTAGTACGTC 58 NA Drosophila melanogaster 50 CG14739 FBgn0037987 FBtr0082553 2 1 1 60 3R 7874273 7874291 CCATCATGAAACACTCGGA 59 7874231 7874249 TACGTCTTCATGCAAAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31211 FBgn0051211 FBtr0082480,FBtr0082479 1 2 3 126 3R 7778372 7778390 CCTATGGCGATTCTTCCAG 59 7778479 7778559 CTTATGCGAGCTTTCAACTC 59 NA Drosophila melanogaster 50 CG6923 FBgn0037944 FBtr0082432,FBtr0082433 2 2 2 109 3R 7571002 7571087 CTACTTTGGAAACTATTGAGCG 59 7570914 7570932 GAGGTTTAAGCAAATGGCG 59 NA Drosophila melanogaster 50 CG31389 FBgn0051389 FBtr0082419 2 1 1 80 3R 7467515 7467534 GCTAATTACACGGTTAGCTG 58 7467577 7467595 GAGAAGGGTTCTTCTGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 hth FBgn0001235 FBtr0082255 2 1 6 88 3R 6359719 6374337 CATATGATGGACGATGGTG 57 6359649 6359667 GACTGAGGAATACAATCGC 57 NA Drosophila melanogaster 50 MICAL FBgn0053208 FBtr0082209,FBtr0082212,FBtr0082211,FBtr0082213,FBtr0082210 2 5 8 81 3R 5834566 5835033 CTACGAAGGTTCAAACCGA 59 5834503 5834521 GAGTCGGTGGATATCTCAG 58 NA Drosophila melanogaster 50 CG16905 FBgn0037762 FBtr0082144 2 1 1 60 3R 5640483 5640503 ACTATCTATCCTCGATCAGCA 59 5640523 5640543 GTGATGTATTTCTTCCACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MtnA FBgn0002868 FBtr0082158 3 1 1 78 3R 5610019 5610037 GCCTAAATAGCCCATACCT 58 5609959 5609977 GCAAGGCATCTTGATTGAG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 mura FBgn0037705 FBtr0082118 3 1 3 147 3R 5372637 5372655 GCAACGTCAATTTAAACGG 58 5368635 5372527 GTTTGTACATCGCAATTTGG 58 NA Drosophila melanogaster 50 CG8036 FBgn0037607 FBtr0081882,FBtr0081881,FBtr0081883 1 3 3 142 3R 4499021 4499107 GATCACTACCAGCAAGGAG 59 4499213 4499231 GAGATGCCGAACATATCGA 59 NA Drosophila melanogaster 50 CG10029 FBgn0037498 FBtr0081591 2 1 1 60 3R 3142441 3142462 GAGTTCCATAACATTGATGACC 59 3142402 3142423 AACCAATGACTATTCCATACCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10277 FBgn0037442 FBtr0113198,FBtr0081722,FBtr0081720,FBtr0081721 2 4 4 89 3R 2211842 2211860 AACAAGTACGACACCTGTG 59 2211913 2212068 CGTGTGATAGGGATGTGAG 59 NA Drosophila melanogaster 50 CG9804 FBgn0037251 FBtr0078943 2 1 1 82 3R 262759 262777 ATTCAGCAGGATTACAGCT 58 262695 262713 CAGGTAGTTTCGGAACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14646 FBgn0037241 FBtr0078919 2 1 1 60 3R 216953 216974 TTTAGGAATCTAGAGAACCGAG 58 216995 217013 GTAACTGAATGTTGGAGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CR32028 FBgn0062463 FBtr0076660 1 1 1 111 3L 8434322 8434340 CGCTGTGAAATTAACTCGT 58 8434229 8434247 AAACTCCGCTTTACTTGCT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 AGO3 FBgn0086780 FBtr0111170,FBtr0111171,FBtr0111172 3 3 3 165 3L 23560303 23561655 ACGGATCTAAAGGTTCATCTG 59 23561782 23561800 GTTCCACCGAGTTTATCCT 58 NA Drosophila melanogaster 50 CG32452 FBgn0052452 FBtr0078524,FBtr0078523 2 2 2 60 3L 22711292 22711310 TGTTGGATATGAGGCAGAG 58 22711333 22711352 TCCTTATCCATAATCTCGCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7148 FBgn0046301 FBtr0078448 3 1 1 60 3L 21823921 21823939 TGAAGCTCTACTACGACCT 59 21823822 21823899 CTCTTTAGGTTCGCTCTATCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG33056 FBgn0053056 FBtr0078314,FBtr0078312,FBtr0078315,FBtr0078313,FBtr0078311 2 5 5 131 3L 21191820 21191990 GGAACATATGAGGGAGCAC 59 21191707 21191726 ATTATGTCCACGCTATCCTC 59 NA Drosophila melanogaster 50 chb FBgn0021760 FBtr0089462,FBtr0089460,FBtr0089461 3 3 3 60 3L 21173982 21174000 GGCTCTTCATCTTGTTGAC 58 21174023 21174042 ATCGAATTGAGTAGATCGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10587 FBgn0037039 FBtr0078333 1 1 1 60 3L 20954744 20954764 CATAGGATGTGCCAGTAAGAG 59 20954704 20954724 GGGCTTCACATACATTATGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4365 FBgn0037024 FBtr0078254,FBtr0078253,FBtr0078252 3 3 3 67 3L 20792308 20792326 GGCATGGAGATCAAGATCC 59 20792356 20792375 GTCTTCGTGTCTACAATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4365 FBgn0037024 FBtr0078254,FBtr0078253,FBtr0078252 1 3 3 64 3L 20792311 20792329 ATGGAGATCAAGATCCTGC 58 20792356 20792375 GTCTTCGTGTCTACAATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 fbl FBgn0011205 FBtr0078186,FBtr0078189,FBtr0078187,FBtr0078188 3 4 5 150 3L 20381809 20381827 CAAGCTGGTCTACTTCGAG 59 20381940 20383027 GACATTGTCCATCTGTAGGT 59 NA Drosophila melanogaster 50 CG6933 FBgn0036952 FBtr0074855,FBtr0074854,FBtr0074853 1 3 3 60 3L 20211887 20211905 GTACCCATAACCGATGTGG 59 20211845 20211863 TTCTTGCAACCCTCATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33710 FBgn0053710 FBtr0091698 1 1 1 121 3L 19945581 19945600 TGATAAATATGCGCCTTGTG 58 19945414 19945432 TATCGAACAGAAGCCTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14103 FBgn0036908 FBtr0074927 1 1 1 223 3L 19797323 19797396 CTAAATGAAATTGCGCCGA 59 19797118 19797136 ACCTGATCAGTAACTCGAG 58 NA DesignRelaxed Drosophila melanogaster 50 Met75Ca FBgn0028416 FBtr0075115 1 1 1 63 3L 18465440 18465459 CGTATTCAATGGTTTCTTGC 57 18465396 18465414 TATCTGTGCATCCACAGAG 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34253 FBgn0085282 FBtr0112447 1 1 1 60 3L 18079931 18079950 CATTACCGTCGAAGGATCTC 59 18079890 18079908 TTGGTCTTCCAAGTGATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Eip74EF FBgn0000567 FBtr0075202,FBtr0075203,FBtr0100411,FBtr0075204 2 4 4 217 3L 17557951 17558465 CCACAACAGGTTCATTTCC 58 17557752 17557773 GTTCTGGTATAAATTCGGATGC 59 NA DesignRelaxed Drosophila melanogaster 50 CG13733 FBgn0036729 FBtr0075225 1 1 1 60 3L 17471277 17471295 TGATGTCAGATCGATCCCT 59 17471235 17471254 CTTTATTTGATCACTCGGCT 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lmpt FBgn0036672 FBtr0089452,FBtr0089457,FBtr0089454,FBtr0089453,FBtr0089458,FBtr0089459 3 6 8 124 3L 16905417 16906329 CATCGACTCCAAGGATCTG 59 16906416 16906435 CACAGTAGATCTTATCCGCC 59 NA Drosophila melanogaster 50 CG9951 FBgn0036671 FBtr0075337 3 1 1 60 3L 16857595 16857614 GGATACATGAATTCATCGGG 58 16857634 16857655 TCCAGAACTTTGTAGATATCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4842 FBgn0036620 FBtr0075384 2 1 1 150 3L 16361801 16361820 GACATAACCCAGAAATCGGA 59 16361933 16362020 TGTTGATAACTCCCAGCAG 59 NA Drosophila melanogaster 50 CG13045 FBgn0036596 FBtr0075472 3 1 1 61 3L 16283390 16283408 TCACCACCTCATCATTCTC 58 16283347 16283365 GTGCTAAATGCTACAGGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13046 FBgn0036595 FBtr0075473 3 1 1 61 3L 16281275 16281294 GTCTCACACCTGGATTACTC 59 16281233 16281252 GCGGGATAGTGATAGTAACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13054 FBgn0036584 FBtr0075481 2 1 1 65 3L 16249245 16249263 CATGTCGGGACTGTATTCC 59 16249198 16249216 ATGTGCTGTAGGGTATACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pka-C3 FBgn0000489 FBtr0075529,FBtr0075528 1 2 2 84 3L 15921444 15921462 GATCTTCGACTATGTCTGC 57 15921313 15921397 ATAGAAGTTGGAGGTTTGAC 57 NA Drosophila melanogaster 50 Eip71CD FBgn0000565 FBtr0075553,FBtr0075552,FBtr0075555,FBtr0075554 1 4 4 68 3L 15505789 15505807 CATAACCACTGAGATTGCA 57 15505898 15505916 AACCTATACTTCTGGTGGT 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG12316 FBgn0036483 FBtr0075651,FBtr0075652 3 2 2 102 3L 15128061 15128081 GGACCATATTGAATCATCTGC 58 15127562 15127997 GAACTGAGAACCACTTCGT 59 NA Drosophila melanogaster 50 CG13458 FBgn0036479 FBtr0075637 3 1 1 139 3L 15107472 15107491 ATTCAGCAATCTTGGAAAGC 59 15107593 15107932 ACTTGCAGAAATTGCACAG 59 NA Drosophila melanogaster 50 CG17839 FBgn0036454 FBtr0110825,FBtr0075695 1 2 2 185 3L 14858236 14858254 AACCAAGGATCATCGTGTG 59 14858471 14858826 AGCTCCTTAACTGTCAGGA 59 NA Drosophila melanogaster 50 Trl FBgn0013263 FBtr0075706,FBtr0100445,FBtr0075703,FBtr0075708,FBtr0075707,FBtr0075705,FBtr0100444,FBtr0075704 1 8 9 198 3L 14747639 14750013 CTTGCTAAAGAATACACCATGC 59 14747462 14747480 GTAGTCGTCCTTGGTAACC 59 NA Drosophila melanogaster 50 CG3919 FBgn0036423 FBtr0075716 3 1 1 110 3L 14405166 14405184 TCATGGATTTCGAGGACAC 59 14405377 14405395 AATCCATGATTGGCAATGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG7768 FBgn0036415 FBtr0075736,FBtr0075737 3 2 2 60 3L 14211495 14211514 CGCGTTTACTTCGATATAGC 58 14211534 14211555 GTAGTTCCATCACAATTCTACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32112 FBgn0052112 FBtr0075917,FBtr0075915,FBtr0075916 1 3 3 80 3L 12737069 12737147 TTTACAACTGGTGTCATGAG 57 12737190 12737208 TTCTCTGTACTGTCCATCC 57 NA Drosophila melanogaster 50 eap FBgn0052099 FBtr0076000 2 1 1 60 3L 12143242 12143260 AAGTTGAGGAACTTCTCGT 58 12143283 12143302 CAGTAGCTGATCACTTCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CycA FBgn0000404 FBtr0076075,FBtr0076076 3 2 2 81 3L 11821209 11821300 GTACATGACGCTGTATATTTCC 59 11821149 11821168 GGATGACATAAGTGATGGCA 59 NA Drosophila melanogaster 50 CG11658 FBgn0036196 FBtr0076128,FBtr0076125,FBtr0076126,FBtr0076124,FBtr0076127 3 5 5 186 3L 11694739 11694757 TAATGGTCTCAGTGAGGCT 59 11694509 11694589 GCTGTCATTTACATGCGAG 59 NA Drosophila melanogaster 50 CG18815 FBgn0042138 FBtr0076105,FBtr0076104,FBtr0076103 1 3 3 80 3L 11622535 11622553 GAATGTGACGTTCAAGACG 59 11622597 11622691 CTGATGATGTCCTTGACGT 59 NA Drosophila melanogaster 50 klu FBgn0013469 FBtr0076247 3 1 1 135 3L 11001480 11001501 GGATAATGCTTGGATAATTCCC 58 10978140 10978158 ATTCTTCCTCGCTATCTGG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG8009 FBgn0036090 FBtr0076255,FBtr0076254 3 2 2 88 3L 10631764 10631782 ATTCATCCCGTCTTCACAG 59 10632347 10632366 ATTATTTGCGGAGCTATGAC 58 NA DesignNoJunction Drosophila melanogaster 50 nudE FBgn0036059 FBtr0114600,FBtr0113158,FBtr0076344,FBtr0113159 1 4 4 98 3L 9893399 9893533 CTCTCAAGCTCAAGTTGGA 59 9893595 9893613 GGTACACCTTCATGGTGTC 59 NA Drosophila melanogaster 50 CG6718 FBgn0036053 FBtr0076362,FBtr0076363,FBtr0076365,FBtr0076364 3 4 4 106 3L 9854428 9854506 TGACTCCAATTAACAACCGA 59 9854341 9854359 AAATGCGCGGAAATATGAG 58 NA Drosophila melanogaster 50 vsg FBgn0045823 FBtr0076398,FBtr0076400,FBtr0076399,FBtr0076401 2 4 4 77 3L 9709210 9709228 ATGGATCCTCGTTCATTGG 59 9709269 9709287 TGTAGAACTTGTAGGCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 SH3PX1 FBgn0040475 FBtr0076413 3 1 1 144 3L 9704660 9704678 TTATCGGTATTGGACAGGC 59 9704054 9704072 TCCTTTCGCTTCTGTATGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG5288 FBgn0035950 FBtr0076553,FBtr0076555,FBtr0076554 3 3 3 81 3L 8977960 8977980 CAGCTTCAACTCAGAAATCTC 58 8977754 8977917 TTGGAAGCTCGATTCTGAG 59 NA Drosophila melanogaster 50 Cdc6 FBgn0035918 FBtr0076647 2 1 1 60 3L 8626333 8626351 CCAAACCAATGAGGAAACC 58 8626291 8626309 TTGGTATTTGTTGCGTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5978 FBgn0035916 FBtr0076648 3 1 1 71 3L 8616644 8616720 CTGGCATTTAATGGTGTGC 59 8616591 8616609 CAAATAGCCAAGGAGTAGC 57 NA DesignRelaxed Drosophila melanogaster 50 Arp66B FBgn0011744 FBtr0076737 2 1 1 84 3L 8108436 8108517 CTCCATCAAGTATCCGGTG 59 8108370 8108389 ATACTTAAAGACGCACTGCT 59 NA Drosophila melanogaster 50 Pdp1 FBgn0016694 FBtr0076782,FBtr0076778,FBtr0076777,FBtr0076775,FBtr0076776,FBtr0076779,FBtr0076781,FBtr0076780 3 8 8 128 3L 7811268 7811288 CCAGATGACAAATACAAGGAG 58 7810754 7811178 GTCGGCATATTGTGTTACC 58 NA Drosophila melanogaster 50 CG7457 FBgn0035812 FBtr0076814 2 1 1 83 3L 7718888 7718961 TGATCAAAGACCTTTCAGGT 58 7718824 7718842 TAACTACGCCGATGTTCAG 59 NA Drosophila melanogaster 50 CG12262 FBgn0035811 FBtr0076808 2 1 1 72 3L 7713483 7713501 CATCATGACCGCCTTAGAG 59 7713597 7713615 CTTCTGTTCCTTGTTACCG 58 NA DesignNoJunction Drosophila melanogaster 50 CG8270 FBgn0035703 FBtr0076967 3 1 1 103 3L 6482951 6483024 AGTGCGAGTTGTATTCCAC 59 6483091 6483109 CAATGGTTCAATGCAGAGG 59 NA Drosophila melanogaster 50 Jon65Ai FBgn0035667 FBtr0077067 2 1 1 73 3L 6047296 6047314 GTTCCATTATCGGCAACAC 59 6047241 6047259 GTAGATGGTCACCGATTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10478 FBgn0035657 FBtr0077069 1 1 1 60 3L 6003439 6003457 GTGCATAAGCTCTCAACCA 59 6003397 6003417 GTTCAATGCCTGAATGATCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 mad2 FBgn0035640 FBtr0077113 3 1 1 86 3L 5805868 5805888 TGGGCTAACCATTCTAATGTC 59 5805741 5805820 TTCGAGAGCCATTCTTCAG 59 NA Drosophila melanogaster 50 CG10575 FBgn0035632 FBtr0077120 2 1 1 66 3L 5760734 5760753 ATGTTTACGAACCTGGTCAG 59 5760687 5760705 GAAACAATACCCTGTCCGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sif FBgn0085447 FBtr0112711,FBtr0112714,FBtr0112709,FBtr0112710,FBtr0112713 3 5 8 188 3L 5692112 5697030 GTTCCTTCGCAAGATTTCG 59 5698070 5698091 CGTAGTAACCATTTCTTTACCG 59 NA Drosophila melanogaster 50 Sucb FBgn0029118 FBtr0077134 3 1 2 270 3L 5555965 5556196 TATCACCACCAACAAGAGC 59 5555713 5555731 AATGTCTAGCGGAACAGTC 59 NA DesignRelaxed Drosophila melanogaster 50 CG34047 FBgn0054047 FBtr0100102 2 1 1 61 3L 5099393 5099411 TGTATATTGTTGCACCCGA 58 5099350 5099368 AACATTGGTGCAAGATGGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Rh50 FBgn0028699 FBtr0073354 3 1 1 147 3L 4913610 4913703 TGTGTTCAGTATCTGCGAC 59 4913814 4913832 GATGTCCGACGTATAGCTG 59 NA Drosophila melanogaster 50 CG32246 FBgn0052246 FBtr0073316 3 1 1 60 3L 4621667 4621686 TTTGTGGACTTGAACAATGG 58 4621708 4621727 AGGTCATGAGGTAATACCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Src64B FBgn0003501 FBtr0100508,FBtr0100505,FBtr0100507,FBtr0100504,FBtr0073321 2 5 5 158 3L 4596190 4596208 ATCTGAGCTTCATGAAGGG 59 4595932 4596069 TCTCAAAGAACCAGTCTTCG 59 NA Drosophila melanogaster 50 Ero1L FBgn0028736 FBtr0073216,FBtr0073217 3 2 2 144 3L 4173146 4173167 AAGATTCTCTACTCAGAGAAGC 59 4173272 4173351 TACTGTTGGATAGTCTGCC 58 NA Drosophila melanogaster 50 kst FBgn0004167 FBtr0112840 3 1 4 128 3L 3358073 3358092 CAGATAATGCAGACAAGCTG 58 3358240 3358276 GGAAATCCTTTGAAGGCTC 58 NA Drosophila melanogaster 50 CG11526 FBgn0035437 FBtr0073083,FBtr0073084 1 2 2 103 3L 3322982 3323000 TACTTCAAGGCCAATTACG 57 3322830 3322915 GATATTAGAGCAGCGATGG 57 NA InUTR Drosophila melanogaster 50 CG11814 FBgn0035296 FBtr0072855 1 1 1 80 3L 1951225 1951300 ATATGGGATCTCAATGACTGG 59 1951165 1951185 CACATGTGTTATTGGAGACTG 58 NA Drosophila melanogaster 50 mu2 FBgn0002872 FBtr0072857,FBtr0072856 3 2 2 80 3L 1945489 1945507 TAAGTCCCAATGAGGAGTC 57 1945372 1945448 TCTGACAGATCTTCTGATAGTG 58 NA Drosophila melanogaster 50 CG13937 FBgn0035287 FBtr0072863,FBtr0072861,FBtr0072862 1 3 3 113 3L 1877653 1877770 ACATTATCTGGTGCAATGTC 58 1877559 1877577 TGAGAAGGATCTTCTTGGT 57 NA Nonspecific Drosophila melanogaster 50 Oseg4 FBgn0035264 FBtr0072797 3 1 1 65 3L 1733894 1733912 GATAGGGTCTACCAGTTGC 59 1733796 1733865 ATCCGTGTACTTGGAATCC 59 NA DesignRelaxed Drosophila melanogaster 50 Cct1 FBgn0041342 FBtr0072741,FBtr0072739,FBtr0072738,FBtr0072740 2 4 4 128 3L 1551686 1551704 TGTACTTAATTGTGGGCGT 59 1551796 1551877 CATTCTGGACGATCTCGTC 59 NA Drosophila melanogaster 50 CG3371 FBgn0035153 FBtr0072610 3 1 1 66 3L 683158 683176 TACCTAAAGCTACTCGAGG 57 683110 683128 GTGTGATCAGCTCAATCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16940 FBgn0035111 FBtr0072486,FBtr0072487,FBtr0072485 3 3 3 81 3L 215570 215591 TATACACTCACTTTACTAGCCC 58 215691 215709 CAATATTTAAGTGCGGCCG 59 NA DesignNoJunction Drosophila melanogaster 50 Mtch FBgn0027786 FBtr0072477,FBtr0072479 1 2 3 83 3L 185060 185138 ACATCTTTCAGTACGCTGG 59 185185 185203 AACCCACCAATTTAGGAGC 59 NA Drosophila melanogaster 50 5SrRNA:CR33442 FBgn0053442 FBtr0086434 1 1 1 62 2R 15620888 15620906 AATACATCGGTTCTCGTCC 59 15620844 15620862 ATCTAAGTACTAACCGCGC 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2765 FBgn0035087 FBtr0113119,FBtr0113118,FBtr0072408 3 3 3 212 2R 20849156 20849174 TATGGACGACACCATACTG 58 20848860 20848879 GAGTTCAGCATGTTGTACAG 58 NA DesignNoJunction Drosophila melanogaster 50 Ssl FBgn0015300 FBtr0072352,FBtr0072351 2 2 2 170 2R 20387261 20387280 AAGATCTATTGCCCTAGCTG 58 20387050 20387128 CTGGAAGCCATAGATACGG 59 NA Drosophila melanogaster 50 CG3257 FBgn0034978 FBtr0072252 3 1 2 113 2R 20007770 20008247 GCGATTGGGATATCTTAACCA 59 20008321 20008340 TCTAGAACATGCTCGTAGGA 59 NA Drosophila melanogaster 50 Ca-P60A FBgn0004551 FBtr0072213,FBtr0072218,FBtr0072215,FBtr0072212,FBtr0072216,FBtr0072211,FBtr0072214,FBtr0072217 1 8 8 80 2R 19817553 19817571 GGATATCATGGAGAAGCCC 59 19817427 19817509 CCAATAGCCATGTAACGGA 59 NA Drosophila melanogaster 50 CG13562 FBgn0034928 FBtr0072135 3 1 1 140 2R 19791998 19792017 TATCCTAACACTGTTCAGGC 59 19792120 19792195 ATATCGCACGTGTCTATGC 59 NA Drosophila melanogaster 50 CG5431 FBgn0034888 FBtr0072080 3 1 2 91 2R 19571952 19571970 ATTGAGAAGGCCAATGTCC 59 19572024 19572094 ACTTCCGAGTGATCTTTCAG 59 NA Drosophila melanogaster 50 Gr59f FBgn0041234 FBtr0072059 2 1 1 64 2R 19431243 19431313 CTTAACCACTTTGTTGGTGG 59 19431340 19431358 AGGTGACATCGTATTGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 CG13541 FBgn0034841 FBtr0072001 3 1 1 60 2R 19172182 19172202 GAAGAACCCTTATTCAAACCC 58 19172222 19172242 TGTGTATCTTCGTCATCATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13511 FBgn0034759 FBtr0071863 2 1 1 60 2R 18547577 18547595 CTACTGCAAGAGTGTCCAG 59 18547619 18547637 GCTATAGCTCCCAATGTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30403 FBgn0050403 FBtr0114523 1 1 1 60 2R 17598120 17598139 CCTACAGATTCGACTTACCA 58 17598079 17598097 ATCTGGCTTAATCTCCGTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Xpd FBgn0015844 FBtr0071576 2 1 2 80 2R 17059015 17059035 GTAAATGTTACGGACTCACTG 58 17059077 17059147 CAAAGTACTGGCAAATGGG 59 NA Drosophila melanogaster 50 CG15649 FBgn0034563 FBtr0071555 2 1 1 140 2R 16860891 16860972 GTACTACGAGAAGAACGGA 58 16860769 16860787 TAGTTCACATTGTGTTCCC 57 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG13870 FBgn0034506 FBtr0086287,FBtr0086288 3 2 2 280 2R 16232028 16232160 GTATCTTCCTTTCAAATGCCC 59 16232402 16232420 ATTCGGATAACTGGTGCAG 59 NA DesignRelaxed Drosophila melanogaster 50 Ate1 FBgn0025720 FBtr0086319 1 1 3 81 2R 16143729 16143948 GGCTAAAGATCGTGTTAGTC 58 16143667 16143685 TGGTATTTGCGATACAACG 58 NA Drosophila melanogaster 50 CG10737 FBgn0034420 FBtr0086588,FBtr0086585,FBtr0086586 1 3 5 80 2R 15064177 15064195 GATTAGTCACAAGCAGTGC 58 15064238 15064454 AATGACGTTAGTTCCATGGA 59 NA Drosophila melanogaster 50 ena FBgn0000578 FBtr0086583,FBtr0114623,FBtr0100174,FBtr0100176,FBtr0086582 2 5 6 114 2R 15048911 15048989 CATTCTCAAGGTCAATGGC 58 15049064 15049085 GTTCTTGACTTTCTGAATCTCC 58 NA Drosophila melanogaster 50 l(2)08717 FBgn0010651 FBtr0086634,FBtr0086635 2 2 2 128 2R 14685321 14685339 TGAACCACATCGATCTGTC 59 14685151 14685229 TTACGCTTGTCTCATCGAC 59 NA Drosophila melanogaster 50 mRpS28 FBgn0034361 FBtr0086714 3 1 1 101 2R 14502017 14502037 CTTTGGTTGGAAGTTTCACTG 59 14501879 14501897 AACTCCAAGTCCTTGATGC 59 NA DesignNoJunction Drosophila melanogaster 50 grh FBgn0004586 FBtr0090012,FBtr0090008,FBtr0090007 1 3 6 146 2R 13726589 13726607 AAACGAAAGATGACAGCCA 59 13726715 13726828 GTAGAAGCTCTTCTCCATGTC 59 NA Drosophila melanogaster 50 sub FBgn0003545 FBtr0086881 2 1 1 87 2R 13633691 13633709 ATTGCGCAAAGAGAATCAG 58 13633564 13633584 CCTCTATCTCATCTTTGAGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG18186 FBgn0034255 FBtr0086896 1 1 1 60 2R 13521536 13521556 CATAGTGGAGAAGTTTCTAGG 57 13521496 13521514 CTTGGTCAGATACTGAGGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 cnk FBgn0021818 FBtr0086962 3 1 1 196 2R 13306731 13306750 CTGGATGAGTCTATGAAGGG 58 13306495 13306513 ATGAACTGCAGATTGTCGT 59 NA DesignNoJunction Drosophila melanogaster 50 GstS1 FBgn0010226 FBtr0087005,FBtr0100258,FBtr0087006 3 3 3 121 2R 12981866 12981885 CATTCTACCTGGAGAAGCTC 59 12981677 12981697 GACCATGTAGTTCATGTAGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG6796 FBgn0034177 FBtr0087057 1 1 1 168 2R 12889886 12889967 GAAATGTTGGCTGAAGGAC 59 12890098 12890117 CCATGTAGTCGTGTATAGCT 58 NA Drosophila melanogaster 50 CG15925 FBgn0034129 FBtr0087159 2 1 1 60 2R 12334382 12334400 GCTAGAGAAGGTTTATGCG 57 12334422 12334442 CAGATACTTTCCATTGTCCAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12970 FBgn0034047 FBtr0087289 1 1 2 112 2R 11743972 11743991 CTCAAGGTATCAATTCCCGA 59 11744066 11744144 TCCAGAATGACATTGCCTG 59 NA Drosophila melanogaster 50 CG34187 FBgn0085216 FBtr0112380 3 1 1 69 2R 11180983 11181002 AATTCACATCGAACCATGTC 58 11180933 11180951 TTGACAGGCTTCTTTACGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8079 FBgn0034002 FBtr0087367,FBtr0087368 2 2 2 85 2R 11109854 11109872 CTCTAGCAACGAGGATAGC 59 11109921 11110010 TAGCAATGTCTTGAAAGCG 58 NA Drosophila melanogaster 50 CG12854 FBgn0033965 FBtr0087467 1 1 1 60 2R 10657482 10657501 GATGAAGAGGATTCCCACTG 59 10657441 10657460 TCTTATCTGTAGCCTTGTCC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12862 FBgn0033950 FBtr0087483 1 1 2 66 2R 10528043 10528061 TAGAGAAGGACAAGTGGAG 57 10527995 10528014 GACAGATTTATGCACTTGGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33468 FBgn0053468 FBtr0087503 3 1 1 60 2R 10494192 10494211 TGGTACATGTACTATGCGAC 59 10494151 10494169 TACGATGGATCTGATCCAC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8485 FBgn0033915 FBtr0087572,FBtr0087570,FBtr0087571,FBtr0087569 2 4 4 91 2R 10126046 10126142 GTTCACAGGGATCTAAAGC 57 10125973 10125992 AAGAACTTGTTGCTAAACCC 58 NA Drosophila melanogaster 50 Nmda1 FBgn0013305 FBtr0089874,FBtr0089877,FBtr0089873,FBtr0089878,FBtr0089875,FBtr0089876 1 6 6 90 2R 8765638 8765659 GAACTTCATATTCTTGGGTCTG 58 8765511 8765587 CATGAGAACCTCTTTCGGA 58 NA Drosophila melanogaster 50 CG17580 FBgn0040755 FBtr0087857 1 1 1 78 2R 8694699 8694717 ATACTCCACAGAGTTGGTG 58 8694816 8694834 TTCAAACAGGAGAACAGAC 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 tafazzin FBgn0026619 FBtr0087864,FBtr0087862,FBtr0087863 1 3 3 129 2R 8641315 8641407 TCTTCATGTTTGGCAAGTG 58 8641204 8641222 ATGTTCACCTTACCTTCGG 59 NA Drosophila melanogaster 50 vis FBgn0033748 FBtr0087945 2 1 2 62 2R 8396972 8397090 CAGTGTCATCTACAGCTGG 59 8396928 8396946 TGAAGACTTTGAAAGCCCA 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 tou FBgn0033636 FBtr0088094,FBtr0088092,FBtr0113066,FBtr0088091,FBtr0088093 3 5 5 179 2R 7467665 7467747 AAATGGAGCTTCATGAGGA 58 7467439 7467457 TATCGAAGATCTGACGCAC 59 NA Drosophila melanogaster 50 inv FBgn0001269 FBtr0088068,FBtr0088070,FBtr0088069,FBtr0088067 2 4 4 60 2R 7364319 7364339 GCATAGACAATATCCTGAAGG 57 7364360 7364379 CTTAAAGCACCAATCTTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 E(Pc) FBgn0000581 FBtr0088139,FBtr0088140 2 2 2 93 2R 7344228 7344316 GTTTACCTACCGACTCGAC 59 7344373 7344391 ATTTAGCATCCGAACAAGC 58 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 3 26 26 97 2R 6421151 6421169 AGACTCTAGTCGATTGCAC 58 6421008 6421093 TAGTAAGGTAGCAAAGTAGGGA 59 NA Drosophila melanogaster 50 lola FBgn0005630 FBtr0100286,FBtr0089366,FBtr0089344,FBtr0089358,FBtr0089364,FBtr0089365,FBtr0089342,FBtr0089345,FBtr0089350,FBtr0089349,FBtr0089351,FBtr0089354,FBtr0089343,FBtr0089356,FBtr0089363,FBtr0089347,FBtr0089352,FBtr0089360,FBtr0089361,FBtr0089346,FBtr0089353,FBt 1 26 26 80 2R 6421013 6421095 AGTCCCTACTTTGCTACCT 59 6420951 6420970 CTCTTGGTACTTGACATCCT 58 NA Drosophila melanogaster 50 CAP FBgn0033504 FBtr0088342,FBtr0088347,FBtr0088341,FBtr0088338,FBtr0088340,FBtr0088343,FBtr0088339 2 7 10 83 2R 6182437 6182455 GTCATTCGTCTGTTTCCGA 59 6182825 6183262 TCGATTGTTCTAGATTCCCG 59 NA Drosophila melanogaster 50 CG1648 FBgn0033446 FBtr0088493 1 1 2 109 2R 5707414 5707433 CAAACAAACTTACAAACCCG 58 5700149 5700167 CACCGAAGTTCTTCAAGGA 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 CG30338 FBgn0050338 FBtr0088533 2 1 1 60 2R 5486211 5486232 GGCTGATTTCAATGAGTTTCTC 59 5486253 5486271 GGATAGAAGGCTAGTAGCG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG13952 FBgn0033415 FBtr0088509 3 1 1 139 2R 5337152 5337170 AAACCAAGATGGTGGAGAG 59 5337331 5337352 TATGACCAGTATGGATTGAGAC 59 NA DesignNoJunction Drosophila melanogaster 50 Pkn FBgn0020621 FBtr0088602,FBtr0088601 3 2 6 100 2R 5155477 5171346 ATTCGTATTATCAGGGCGA 58 5155395 5155413 TATGGACATACAGCTCTCC 57 NA Drosophila melanogaster 50 hig FBgn0010114 FBtr0088608,FBtr0100119,FBtr0088606,FBtr0088607 3 4 4 153 2R 5122075 5122093 AGTACGGAAATCAGTCGAG 58 5120228 5121958 TCGTAGATACCCTTGTCCT 58 NA Drosophila melanogaster 50 Phax FBgn0033380 FBtr0088569,FBtr0088568 2 2 2 103 2R 5003140 5003158 AAGTGAAGATAAGCAACCG 57 5003283 5003301 TATTGATCTCGTGGGTCCT 59 NA DesignNoJunction Drosophila melanogaster 50 CG8193 FBgn0033367 FBtr0088663 3 1 1 161 2R 4930109 4930185 TATGAGAACGACAGGATTGAC 59 4929968 4929986 CGTGAGGAAGTTAACCAGG 59 NA Drosophila melanogaster 50 CG8272 FBgn0033337 FBtr0088686 1 1 1 63 2R 4777366 4777384 TCTTTAGAGCACTGCAGTG 59 4777258 4777279 CCAGCTTGGATATGTTTATACC 58 NA DesignNoJunction Drosophila melanogaster 50 sut3 FBgn0028561 FBtr0088779 1 1 1 80 2R 3978152 3978170 TCATGATGACGATCTCCTG 58 3978211 3978294 GTATAGTCGACATTAGTTCCAG 57 NA Drosophila melanogaster 50 CG12159 FBgn0033232 FBtr0088888,FBtr0088889 3 2 2 60 2R 3803453 3803471 TGTTGTCTACATCCTCGTG 59 3803411 3803430 AACCCTCATAATAAGCAGCA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1550 FBgn0033225 FBtr0088899 3 1 1 60 2R 3698454 3698472 GGATCTCCTTAGCATTGTG 57 3698412 3698430 AAGCGTAAGGCTATCATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG30497 FBgn0050497 FBtr0088933,FBtr0088934,FBtr0088932 1 3 3 60 2R 3628353 3628373 CTACTTGCGTAACCATTTCTG 59 3628313 3628332 CATCAGGTACTGATACTGCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11166 FBgn0033166 FBtr0089007,FBtr0089011,FBtr0089008,FBtr0089006,FBtr0089009,FBtr0089010,FBtr0089012 3 7 7 84 2R 3287432 3287450 GATCTACGACAAGGAGACG 59 3287308 3287384 GGTGACTTCATTCCTGGTC 59 NA Drosophila melanogaster 50 CG14589 FBgn0033063 FBtr0085978 2 1 1 138 2R 2025647 2025666 TATCTAAGGATGCGCAAGTG 59 2025765 2025837 CTAACTAGATCATGCCTTGCA 59 NA InUTR Drosophila melanogaster 50 CG7791 FBgn0033038 FBtr0086057 2 1 1 100 2R 1647162 1647180 TATATTCTTCAGCTCGGCC 58 1647027 1647101 GTAGGAAAGTAGTTACGAAAGG 58 NA Drosophila melanogaster 50 lt FBgn0002566 FBtr0111123,FBtr0111125,FBtr0111124 1 3 3 80 2L 22832737 22832816 GCATAGTTGACTACTTTAGCC 58 22832857 22832876 GTGATTGTCGAAGATTTGGA 58 NA Drosophila melanogaster 50 tio FBgn0028979 FBtr0089377 2 1 1 60 2L 22021316 22021334 ATCAACCCATACTTGGCAG 59 22021354 22021376 CTAACTTAGAATATCCCAGTCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1416 FBgn0032961 FBtr0085903,FBtr0085904,FBtr0085905 2 3 3 113 2L 21759358 21760490 GAAGAAACTTCATCCAGCAC 59 21760566 21760584 CTGTTTGATGCTATGCCAG 58 NA Drosophila melanogaster 50 cul-2 FBgn0032956 FBtr0085900,FBtr0085899 1 2 2 87 2L 21662617 21662694 GCCTTAATACAAGAGGTTCTC 58 21662743 21662761 CAATTAATGACTCCACGCA 58 NA Drosophila melanogaster 50 Hr39 FBgn0010229 FBtr0081481,FBtr0081480,FBtr0081479 1 3 4 153 2L 21256007 21256026 GAAGATAACCCTATCGCAGG 59 21257041 21257113 CTCTGTCGTATCTGACTGC 59 NA Drosophila melanogaster 50 clumsy FBgn0026255 FBtr0110895 1 1 2 101 2L 21210451 21210470 ACATTGGAGTACAATGTGGA 58 21210534 21210823 ATACGGAGAATTGAAGGGC 59 NA Drosophila melanogaster 50 CG41073 FBgn0069950 FBtr0100266 2 1 1 112 2L 20231625 20231757 CTGGATTTAGCGTAGTCCA 58 20231453 20231471 AGCATAATTCAGGCAACAG 58 NA Drosophila melanogaster 50 lok FBgn0019686 FBtr0081330,FBtr0081328,FBtr0081329 2 3 3 157 2L 20063602 20063680 CTATTTACTTGCCTGAGTGG 57 20063800 20063818 TCCACAATGAGCATTTGGT 59 NA DesignRelaxed Drosophila melanogaster 50 barr FBgn0014127 FBtr0081349,FBtr0081348 2 2 2 63 2L 20058831 20058849 AACACAGTCTTCGAGATCG 59 20058714 20058804 CAATCACTTTGGCAACCTG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG10659 FBgn0032839 FBtr0081350 3 1 1 61 2L 20025651 20025669 AGTCTACTAGCGAGAACGT 59 20025608 20025626 CGACAGGTGATACTCATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31798 FBgn0051798 FBtr0081200 1 1 1 71 2L 19395239 19395257 GTACTACCTGATCCAAGGG 58 19395350 19395368 CTCTTGTAACACGAAGTGG 58 NA DesignNoJunction Drosophila melanogaster 50 Ddc FBgn0000422 FBtr0081167,FBtr0081166 3 2 3 82 2L 19119172 19119193 GACTTTATAGCCGAATATCTGG 58 19118084 19118102 ATCAATGGCTTCAGGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 tup FBgn0003896 FBtr0081111,FBtr0081112 1 2 2 103 2L 18862252 18862270 GTATTAGGGACAAGCGACC 59 18862106 18862185 ATTGTAGCAGGTTCTGAGC 59 NA Drosophila melanogaster 50 CG10602 FBgn0032721 FBtr0089314,FBtr0089315,FBtr0089317,FBtr0089316 3 4 4 106 2L 18856840 18856925 CTAAGGGAAGCCTTAACGT 58 18856752 18856771 CATATAAGGATGCTCCTTGC 58 NA Drosophila melanogaster 50 Mst36Fb FBgn0086682 FBtr0081075 2 1 1 81 2L 18672275 18672347 CAGTAGTTTGACTGATCCGA 59 18672213 18672234 GTTAAGCATTAGTCTCTGATCC 58 NA Drosophila melanogaster 50 CG5790 FBgn0032677 FBtr0081050 3 1 1 60 2L 18296035 18296054 ATGATGGTAGTGTAGTGCAG 59 18296074 18296095 CTCAGAATGGAGAATACTTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17681 FBgn0032668 FBtr0081038 3 1 1 80 2L 18154028 18154047 ACATACAATACCAATGTGGG 57 18154090 18154161 GAATCCACTTTGCAGTCTC 58 NA Nonspecific Drosophila melanogaster 50 CG5758 FBgn0032666 FBtr0081036,FBtr0081035,FBtr0081037 3 3 3 80 2L 18128003 18128022 TCAGGTGTTCATTATCTCCG 59 18128064 18128147 TCCTTATCCTTGTGCATCTG 59 NA Drosophila melanogaster 50 mdy FBgn0004797 FBtr0080916,FBtr0080918,FBtr0080915,FBtr0080917 1 4 4 86 2L 16820786 16820804 ATAACGCCCTAATCCTGAG 58 16820919 16825419 CAATTATTTCCATGGCTAGACC 59 NA Drosophila melanogaster 50 Idgf3 FBgn0020414 FBtr0080864,FBtr0080862,FBtr0080863 3 3 3 91 2L 16451848 16451866 GATCAAGGATTTGAGTGCC 58 16451921 16452205 CATCATAGTACCAGCTGGA 58 NA Drosophila melanogaster 50 jhamt FBgn0028841 FBtr0080859 3 1 1 60 2L 16366144 16366164 TATGCCAGTAAGCATTACCAG 59 16366186 16366204 ATCCAATGTCCAGAACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31823 FBgn0051823 FBtr0080810 3 1 1 61 2L 15899211 15899308 CCAGCGAATCAAATAGTTACC 59 15899170 15899191 GAATAAATACCCACCTGTATCG 58 NA DesignRelaxed Drosophila melanogaster 50 CG31735 FBgn0051735 FBtr0080791 2 1 2 175 2L 15895802 15895878 AATTAACCTGGACCACTGTG 59 15896016 15896034 TTCATACAGGATATGCCGC 59 NA Drosophila melanogaster 50 CG15278 FBgn0032554 FBtr0080683 3 1 1 66 2L 14875760 14875779 TTAATTTGGCTCTCCTGGTG 59 14875654 14875672 TTCGACAAGAGAACCAGTG 59 NA DesignNoJunction Drosophila melanogaster 50 rk FBgn0003255 FBtr0080611,FBtr0080613,FBtr0080612,FBtr0080610 2 4 5 85 2L 13991706 13992947 GTGGTCGTCCTAGATTTGG 59 13991056 13991657 GTTAGCTCCTCCAGATTGG 59 NA Drosophila melanogaster 50 CG16813 FBgn0032490 FBtr0080446 2 1 1 80 2L 13228235 13228253 AACAATACCTGACCAGTCG 59 13228297 13228315 GGAAGCGCACATAGTAGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090028,FBtr0090021,FBtr0090017,FBtr0090013,FBtr0090023,FBtr0090018,FBtr0090026,FBtr0090022,FBtr0090016,FBtr0090029,FBtr0090015,FBtr0090025,FBtr0090014,FBtr0090019,FBtr0090027,FBtr0090024,FBtr0090020 1 17 17 86 2L 12723994 12724013 AGACCTATCAGATCAGACAG 57 12724062 12724215 ATTTGAGCACCTTAATGCC 58 NA Drosophila melanogaster 50 MRP FBgn0032456 FBtr0090015,FBtr0090014 1 2 17 197 2L 12726932 12726950 TTATATCAAGAGCGTTGGC 57 12727111 12729943 TATTTGGATAGCACTTGGC 57 NA Drosophila melanogaster 50 Or33a FBgn0026392 FBtr0080278 3 1 1 60 2L 11935345 11935363 GGCCAGTTCCTTTCTAGTG 59 11935384 11935405 CAAAGAACAGGATGTTGATGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17104 FBgn0040496 FBtr0080105 2 1 1 82 2L 10678789 10678908 CATTGAGGAAACTACAGAACTG 58 10678951 10678969 CTGTTTCAGTGGTCTCCTC 59 NA Drosophila melanogaster 50 CG17098 FBgn0032276 FBtr0080103 2 1 1 60 2L 10652781 10652800 GTCGCTAATAAGATACGACC 57 10652822 10652841 AACCACTGATAGGATAACCA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lrr47 FBgn0010398 FBtr0080092 1 1 1 60 2L 10518498 10518518 GCTGTGGATAAGTATATGCTG 58 10518540 10518558 GATCTATTAGCACAGCGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5198 FBgn0032250 FBtr0080026 2 1 1 103 2L 10436404 10436422 CAAAGGACAATTGGTTGGA 58 10436554 10436572 CTTCTCCTCATCGGAAGAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG33723 FBgn0053723 FBtr0091721 1 1 1 99 2L 9440163 9440252 CACTCCTGTCCATATAATAACG 58 9440085 9440103 AATCACCTTCCGGATAAGG 58 NA Drosophila melanogaster 50 CG13384 FBgn0032036 FBtr0079656,FBtr0079654,FBtr0079653,FBtr0079658 3 4 6 231 2L 8385087 8386225 ATACAGTCAGTATTCCCGAG 58 8386516 8386535 TTATAGGACTTATCCGTCGA 57 NA DesignRelaxed, InUTR Drosophila melanogaster 50 CG34132 FBgn0083968 FBtr0110879 3 1 1 106 2L 7885678 7885697 ACTTATGGACCAGGTTAAGC 59 7885766 7885784 AAGTTCCCGGCTTATTGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Proct FBgn0045038 FBtr0079562 3 1 1 188 2L 7870284 7870302 GACGATTTGGACAAGTTGC 59 7865997 7866015 ATTAGAGTTGCCGTTGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31904 FBgn0051904 FBtr0079502,FBtr0079501 1 2 2 284 2L 7735484 7735566 ATTTAAAGGCATTGGCTACG 58 7735106 7735124 GTGTAGGACAGTCCATGTC 59 NA DesignRelaxed Drosophila melanogaster 50 TepII FBgn0041182 FBtr0079510 3 1 5 107 2L 7696802 7698737 CCTTACAACACTGGTCCTC 59 7696713 7696731 ATCTCCAGAATCACCTCGT 59 NA Drosophila melanogaster 50 Myo28B1 FBgn0040299 FBtr0079475,FBtr0079473 3 2 4 84 2L 7687916 7687984 CCATTGGACTCCGATAAGG 59 7688029 7688050 GTACCTTAACAACAGCTTTGAG 59 NA Drosophila melanogaster 50 CG5261 FBgn0031912 FBtr0079445,FBtr0079444 3 2 2 103 2L 7428203 7428285 TAAGCTCAACGAAGGTGAC 59 7428351 7428370 CCTGGATGAGAATCTTAGCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG34310 FBgn0085339 FBtr0112506,FBtr0112507 2 2 2 96 2L 6674206 6674225 ACTGAAACTAGTGGAACCAC 59 6674356 6674374 GTCGATCCAATACCGATGG 59 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Ent2 FBgn0026585 FBtr0079290 1 1 1 60 2L 6563505 6563525 AGAAATCTGATTCTAAGGCCC 59 6563546 6563565 GCTGCTTTCTTGAAGATCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Kr-h1 FBgn0028420 FBtr0079194,FBtr0079195 3 2 2 119 2L 6095045 6095063 CTAACTACGATGACACCCA 58 6095144 6095248 GTAGAGCGGATTCATATTTGG 58 NA Drosophila melanogaster 50 CG14013 FBgn0031720 FBtr0079121 3 1 1 61 2L 5553644 5553665 TTACAATGACTACATCTCCTCG 59 5553604 5553623 TTTGATTGCCCAGATATCTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 l(2)05714 FBgn0010607 FBtr0079050,FBtr0079051 3 2 2 60 2L 4970475 4970494 ACAGAATGAAACAGATCTCC 57 4970434 4970453 GAGCTGTATCATCTCTTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Jon25Bi FBgn0020906 FBtr0079054,FBtr0100432 3 2 2 85 2L 4954847 4954865 GTGACCATCTACTACGGAG 58 4954780 4954799 TTGTGGTTCTGGATGAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3036 FBgn0031645 FBtr0077391 1 1 1 114 2L 4902800 4902818 TATTGCACCGAACTTTGGA 59 4902894 4902982 GAAGGATTGATCCTTGTAGGT 59 NA Drosophila melanogaster 50 CG3702 FBgn0031590 FBtr0077477 3 1 1 60 2L 4226115 4226133 ATACCATCGTGTCTCACTG 58 4226073 4226091 TTAGTTTGGTCCACTACGA 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3542 FBgn0031492 FBtr0077648,FBtr0077649 2 2 2 79 2L 3024055 3024073 GTTAGCGGCTATAGAGGTG 59 3024169 3024190 GTTTATCCTTAAACACCACAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG31681 FBgn0051681 FBtr0077802 3 1 1 60 2L 2286657 2286675 TCATCTACAGTGATCGAGC 58 2286615 2286636 GTCACAGTTACATTAGAAAGGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4270 FBgn0031407 FBtr0077754 2 1 2 81 2L 2263984 2264004 CACTTTACTCAGCTCATTTGG 59 2264100 2264119 AAACCACCCAAGTTCTATCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG34174 FBgn0085203 FBtr0112365 2 1 1 89 2L 2214832 2214853 GGAGCTATCCGAAAGATATGAG 59 2215032 2215050 ATGAGCTGGCTTCTTTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10869 FBgn0031347 FBtr0113010 1 1 2 140 2L 1586762 1586780 GGTAACACCTCGAAGTTCC 59 1585158 1585176 ATAGTATCCCATGATGCCC 58 NA DesignNoJunction Drosophila melanogaster 50 CG5556 FBgn0031332 FBtr0077948 1 1 1 60 2L 1352714 1352733 GCTATTGCATCTTCGATCTG 58 1352617 1352636 GCCCTCTTATAGACATGACG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4375 FBgn0031295 FBtr0077997 3 1 1 62 2L 1026477 1026495 ATCGGAACACAGTGAAGTC 59 1026433 1026451 CCGTTGGTAGTCTTGTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 drongo FBgn0020304 FBtr0078035,FBtr0078036,FBtr0078037 1 3 3 111 2L 836547 836565 TCCCATCTACAATGCAGTG 59 835456 835474 CTTAAGAGCGGCATATCGA 59 NA DesignNoJunction Drosophila melanogaster 50 CG2813 FBgn0031268 FBtr0078069 2 1 1 81 2L 575078 575150 CTACTTTGTCATTAGTGGCG 58 575194 575212 TCCAAGTCCTAATAGTGCG 58 NA Drosophila melanogaster 50 Gs1 FBgn0001142 FBtr0078115,FBtr0078114 1 2 2 62 2L 132961 132979 TAATTAGCGATCAGGAGCC 58 133004 133023 CGTCCACGTCTAATAAAGTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pncr004:X FBgn0047095 FBtr0091949 1 1 1 93 X 19068655 19068673 CCTTTCTGAAGAGTCCCAC 59 19065309 19068598 TATCGAGGGTATCTTGGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18809 FBgn0042132 FBtr0074810 3 1 2 284 X 19637732 19638305 TAACAACAAAGGCGAATCC 58 19636928 19637485 GCAAATCGAAATTGTTTGCG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 mei-217 FBgn0028581 FBtr0091941 2 1 1 151 X 17035133 17035151 GGAAGCATGTCATCTACGA 59 17034937 17035018 GATGGTATGGTGCCTATGG 59 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 CG13008 FBgn0030780 FBtr0074323,FBtr0074322 3 2 2 75 X 16605540 16605561 TGAGCTATCAAGATATGTTCGG 59 16605597 16605689 AACCGAAACTCAAAGTTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Traf3 FBgn0030748 FBtr0074275,FBtr0074274,FBtr0074273 2 3 3 110 X 16310666 16310684 CGCATCAAGGATTACTCGA 59 16310758 16310836 TATATCCAGCCGTAGAGCA 59 NA Drosophila melanogaster 50 ct FBgn0004198 FBtr0071069 3 1 3 125 X 7526283 7526301 GTTATATCGGCTACCGACG 59 7526813 7539815 GCGGAATTCTGAATGAGAG 58 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG3342 FBgn0029874 FBtr0070918 2 1 1 61 X 6421033 6421051 GAGACACCTTCCAATGAGG 59 6420990 6421008 TTTGACGAACCTATGGGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34434 FBgn0085463 FBtr0112735 3 1 1 171 X 5509831 5509975 GACCAAGAACACAAACGTC 59 5509678 5509696 AACTGCATTCCAATCACGA 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12688 FBgn0029707 FBtr0070653 2 1 1 64 X 4275988 4277076 CAAGAAGATCCAAGCATCC 58 4277104 4277122 GAGTGTCCTCTAAGTCCTG 58 NA DesignNoJunction Drosophila melanogaster 50 norpA FBgn0004625 FBtr0100671,FBtr0070651,FBtr0100670,FBtr0070650 3 4 4 120 X 4243571 4243589 TCAAGGTCGATGAATACGG 59 4243738 4247510 ATCTTCGGATCCTTTGGTG 59 NA Drosophila melanogaster 50 CR42205 FBgn0085832 FBtr0114290 1 1 1 60 U 6017726 6019178 AATGGATATCGCATCTACTTCC 59 6017687 6017706 AGAACCGTTAACGTAGTCTG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG2052 FBgn0039905 FBtr0089129,FBtr0089128 1 2 2 84 4 402798 402816 GTGTTCCTACTGTGATCGT 59 399510 402751 TTTATAGGGTCGTTCTCCTG 58 NA Drosophila melanogaster 50 Anp FBgn0000094 FBtr0085611 1 1 1 67 3R 26035713 26035731 TACTTTGTGGTCCTTGTCG 59 26035762 26035780 AATACTGCATCCGAAGGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9997 FBgn0039597 FBtr0085314 2 1 1 60 3R 24582369 24582387 TACCTTGACCAATTCGGAC 59 24582327 24582347 CTGATAGAGTCTCACCATCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG5959 FBgn0039387 FBtr0084940 2 1 1 81 3R 21724936 21724956 CATACACGGATTTACATTCCG 59 21724998 21725084 ATCCAGCTCCTGAATATTGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alpha4GT2 FBgn0039378 FBtr0084906 2 1 1 60 3R 21668119 21668138 CAACAGACATAACGTAACCA 57 21668160 21668179 GTTCCAAACATGAATCACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 twin FBgn0011725 FBtr0084567,FBtr0084570,FBtr0084568,FBtr0084566,FBtr0084571,FBtr0084569 1 6 6 80 3R 20025044 20025063 CTAAGACTATGTCCGAGCTG 59 20024922 20025001 TGATCAGCGTAAACTTGGA 58 NA Drosophila melanogaster 50 CG4572 FBgn0038738 FBtr0083861,FBtr0083860,FBtr0083862 1 3 3 60 3R 15688809 15688827 GTGGGCAATAAGACATTCC 58 15688767 15688786 TCTTCAAGTGAAGTTCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11779 FBgn0038683 FBtr0100549,FBtr0083749,FBtr0100548 3 3 4 146 3R 14982252 14985333 TTTACAGAATAGCTGCCCT 58 14982061 14982079 TCATGTTGTCGAAGAACTG 57 NA DesignNoJunction Drosophila melanogaster 50 CG7718 FBgn0038649 FBtr0083682 3 1 1 132 3R 14570378 14570454 AAATGCAAACGGCTTTCAG 59 14570264 14570283 GTACTCGAAGAAGTTAACGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14312 FBgn0038596 FBtr0083599 1 1 1 92 3R 14108903 14108921 GATGGAAACTTCCTGAGCA 59 14108829 14108847 TATGGCATGGTAGAGACTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG17806 FBgn0038548 FBtr0083527 3 1 1 60 3R 13628488 13628508 CAAAGGAGAAGGATTCTACCA 59 13628448 13628466 CTGTCTTAAGAGGCACTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CSN5 FBgn0027053 FBtr0083292 2 1 1 140 3R 12296669 12296690 GGAACAAATACTGGGTAAACAC 59 12296791 12296868 TCTCATTGACATCGGTTCC 59 NA DesignNoJunction Drosophila melanogaster 50 ird5 FBgn0024222 FBtr0083236 1 1 1 87 3R 11872785 11872871 AAAGACCTATTCGATTGCG 57 11872716 11872736 CGGCGTCATTATTTAACTCTG 59 NA DesignNoJunction Drosophila melanogaster 50 CG14376 FBgn0038153 FBtr0082784 1 1 1 111 3R 9248179 9248198 ACGTAGTTCCTATCAGATCC 58 9248272 9248343 CTTGAAGATCTCACCATCC 57 NA Drosophila melanogaster 50 poly FBgn0086371 FBtr0082772 2 1 1 60 3R 9188264 9188282 AAATGGCTAACGAATACCG 57 9188222 9188241 CGCGAATATCCTCTACTAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14695 FBgn0037850 FBtr0082335 1 1 1 60 3R 6704807 6704825 CAAGTGGATAAGTCTGCTC 57 6704765 6704783 TCCGAACAATATACGACCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34108 FBgn0083944 FBtr0110788 3 1 1 107 3R 6051480 6051553 GTGAAACCAAGAAGCTACTC 58 6051622 6051641 ATCGTTTATGGACAGGATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG34108 FBgn0083944 FBtr0110788 1 1 1 106 3R 6051480 6051553 GTGAAACCAAGAAGCTACTC 58 6051622 6051640 TCGTTTATGGACAGGATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33631 FBgn0053631 FBtr0091608 1 1 1 60 3R 5889832 5889902 TTCAGAAACCGATACTTCGT 59 5889925 5889943 TTCATAAAGCGAGAGTCCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9444 FBgn0037730 FBtr0082099 2 1 1 88 3R 5507627 5507706 CAGGAACGAATAAAGAATTCCC 59 5507560 5507579 AGTAATTCGCCCATCATGAG 59 NA Drosophila melanogaster 50 CG8358 FBgn0037727 FBtr0082081 1 1 1 60 3R 5502335 5502354 GGTTACGCTTTATCAATCCA 57 5502375 5502454 GAAGTTGTTAGCCATGTAGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG16736 FBgn0037668 FBtr0081985 1 1 1 75 3R 5082868 5083009 ACTATCGAAATTTCTGGAGAGG 59 5082814 5082832 TTCCAACCGGTAAATAGGT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9837 FBgn0037635 FBtr0081933 1 1 1 96 3R 4635387 4635466 ATTTACTTTGGTCCAGGGT 58 4635309 4635327 AATGGTCTTGTCGATGGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7994 FBgn0037599 FBtr0081875 1 1 1 105 3R 4418269 4419006 CAAACATGTTGCAACACTG 58 4419075 4419093 TTTCTGCTTGTATTGGTGC 58 NA DesignNoJunction Drosophila melanogaster 50 Obp83ef FBgn0046876 FBtr0078618 1 1 1 60 3R 1935561 1935579 CTCGTGGATGTACCATGAG 59 1935519 1935537 CTCCACTAGCTTATTCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14656 FBgn0037278 FBtr0078878 1 1 1 143 3R 623417 625429 ATTGGTGAACTTGGTGGAG 59 623292 623310 TTGTTGATAACCGGACGAC 59 NA DesignNoJunction Drosophila melanogaster 50 pncr011:3L FBgn0083068 FBtr0091958 3 1 1 108 3L 11090061 11090079 CGACACTTTCTCAATAGCT 57 11090151 11091199 AAAGAGAACGTCGTAAACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Hr78 FBgn0015239 FBtr0078392,FBtr0078390,FBtr0078389,FBtr0078391 3 4 4 89 3L 21488570 21488706 GACATTGATGTTCGCTACC 58 21488499 21488517 TCTGCCTTCGGAATATCTG 58 NA Drosophila melanogaster 50 CG32428 FBgn0052428 FBtr0078222 1 1 1 60 3L 20465779 20465797 TGTACACCAAGAGATGTCG 59 20464245 20465755 AAATCATTGCAGTACTGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Dcp2 FBgn0036534 FBtr0075540,FBtr0100528,FBtr0075539,FBtr0075538 3 4 4 153 3L 15816273 15816356 GTTGTTCCAACACATTCCC 59 15816138 15816156 GAAGTAGGACTGCACTAGC 59 NA Drosophila melanogaster 50 Ufd1-like FBgn0036136 FBtr0076223 1 1 1 66 3L 11115947 11116022 ATTATTATGCCTCCCTCGG 58 11115899 11115917 TGAACAGCATTGGATACTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3335 FBgn0036018 FBtr0076383 3 1 1 157 3L 9619782 9619859 AAACCCAAGATAATGATGGC 58 9620028 9620046 AGGAATACGTAAGGATCGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG33702 FBgn0053702 FBtr0091690 2 1 1 62 3L 9506050 9506142 ACTCGTGTCCATATACAGAG 58 9506007 9506026 GCGTCTTATCGTTGAAAGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 path FBgn0036007 FBtr0076428,FBtr0076427 2 2 2 109 3L 9490135 9490223 CCAACAACCGATAATGAAACTC 59 9490047 9490066 AAGATTCCCATGATGAGACC 59 NA Drosophila melanogaster 50 RNaseX25 FBgn0010406 FBtr0076752 1 1 1 74 3L 7963842 7964059 GCGACATATCGTATTCGGA 59 7964097 7964115 ATTCACTGTCATCGTCTGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7386 FBgn0035691 FBtr0076999 3 1 1 138 3L 6184095 6184116 CCATGTTAAGATCGTACATGAG 58 6184215 6184291 GTCACAAACCTTGCATTCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Lcp65Ag3 FBgn0086611 FBtr0077061 3 1 1 75 3L 6123688 6123706 ATAAGAACGGATTCCAGCC 59 6123631 6123650 TACAGTGAAAGCAACTTCAC 58 NA DesignNoJunctionSingleExon, InUTR Drosophila melanogaster 50 Sras FBgn0029121 FBtr0077083 3 1 1 91 3L 5557284 5557302 TATACCATACAGCCTGACG 58 5557357 5557434 AGTCCAGATCGAAGTAGGA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Sucb FBgn0029118 FBtr0077135 2 1 2 244 3L 5556489 5556604 ATCGTTCATAAGGTTCCCG 59 5556182 5556201 TACTTGGTGGTGATATGGAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG14995 FBgn0035497 FBtr0073272,FBtr0073274,FBtr0073271,FBtr0073273 3 4 4 80 3L 4098196 4100795 AAGTTCTGGCTCTTAGTGTC 59 4098135 4098153 GCAAATATAGCTCCTGCAG 58 NA Drosophila melanogaster 50 kst FBgn0004167 FBtr0112840,FBtr0073070,FBtr0073072,FBtr0073071 1 4 4 80 3L 3365741 3365818 AGTCCATGAAGCAACAGTC 59 3365860 3365880 AGTTACGAGAACTAACTGGTG 59 NA Drosophila melanogaster 50 pita FBgn0034878 FBtr0072113,FBtr0072112 2 2 2 152 2R 19437404 19437478 GTCATGAGACAGTCCACTC 59 19437270 19437288 ACAGCATGTAGGACTTGTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ugt58Fa FBgn0040091 FBtr0071934 2 1 1 218 2R 18531141 18531311 TGGAATCTCAATGGAATCGT 59 18530881 18530901 TTTCGGTAACGTTATCCAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 Pros29 FBgn0003150 FBtr0071522 3 1 1 257 2R 16882796 16882951 GATCTATCGCCTGAACGAC 59 16883172 16883190 GACTGGTACAGTTGGTAGC 59 NA DesignNoJunction Drosophila melanogaster 50 CG3221 FBgn0034569 FBtr0071550 3 1 1 69 2R 16880287 16880305 TGCTGTTCAGGATCAACTG 59 16880177 16880195 GGAATCATAGACAAACGGC 58 NA DesignNoJunction Drosophila melanogaster 50 grh FBgn0004586 FBtr0090009,FBtr0090012,FBtr0090011,FBtr0090008,FBtr0090007,FBtr0090010 3 6 6 164 2R 13726937 13727109 ATGCAGACCGATAAGAAGG 59 13727237 13727255 CAACGGTGTATACACCTCC 59 NA Drosophila melanogaster 50 CG10956 FBgn0034195 FBtr0110777 3 1 1 67 2R 13010636 13010715 GGCAATGGTAGTTTGACAC 59 13010587 13010606 AAAGCAAATGGATGAGTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6665 FBgn0034172 FBtr0087054 1 1 2 77 2R 12845634 12845652 CGAATGAGTTCGGAAAGGA 59 12845693 12845779 TTAGCTGTTTGGATGCCTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33459 FBgn0053459 FBtr0089859 3 1 1 82 2R 12376135 12376226 GAATATACAGTTGCCATTCGTC 59 12376269 12376287 TCTACAGAATCCACAAGCC 58 NA Drosophila melanogaster 50 Strn-Mlck FBgn0013988 FBtr0087275,FBtr0087272,FBtr0087270,FBtr0087274,FBtr0087276 3 5 7 82 2R 11836642 11836721 TTTGCTACGTGCTACTCTC 59 11836578 11836599 ATCCGCTCTAGTTATATTCGAG 59 NA Drosophila melanogaster 50 CG30060 FBgn0050060 FBtr0087714 1 1 1 60 2R 9310974 9310993 TATATCCCTGCGATATCGAC 58 9310933 9310952 TTCAGCGTCTCATTAATCAC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ndg FBgn0026403 FBtr0088349,FBtr0088350 2 2 2 116 2R 6208456 6208475 AAAGGATACCATTGAGGTGG 59 6208554 6208634 AACAGTTTCTCCCTGTAGG 58 NA Drosophila melanogaster 50 nec FBgn0002930 FBtr0089052 1 1 1 106 2R 3044374 3044392 ACCAAGTTGATGGATCAGC 59 3044220 3044304 AACTTGGCATAGGAAGCTG 59 NA Drosophila melanogaster 50 Bap170 FBgn0042085 FBtr0086107 3 1 1 128 2R 2525514 2525702 GAGCAACATTCACATCCAG 58 2525794 2525812 TTAGAGTCAATACCCTCGC 58 NA DesignNoJunction Drosophila melanogaster 50 His2A:CG33853 FBgn0053853 FBtr0091857 1 1 1 60 2L 21518936 21518955 GAATTATTCCGCGTCATCTG 59 21518978 21518996 AGCAGCTTGTTTAACTCCT 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 Oseg5 FBgn0032891 FBtr0081451 2 1 1 87 2L 20833677 20833695 ACAGCATCTGGTATTGTCC 59 20833447 20833626 CCAAATTCCGTCGTATCCA 59 NA Drosophila melanogaster 50 ik2 FBgn0086657 FBtr0081389,FBtr0081390 2 2 2 116 2L 20678034 20678052 ATAAAGACCCTGCTGACTG 58 20678130 20678210 CCATTGATCGTTAAGTTCGTC 59 NA Drosophila melanogaster 50 CG31687 FBgn0051687 FBtr0081361 3 1 1 90 2L 20451270 20451379 GTAATAGGTGGCCATTTCCT 59 20451432 20451450 AAGTGGAGTCTATGATGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 lectin-37Da FBgn0053532 FBtr0091498 1 1 1 60 2L 19418503 19418522 CCCTTCATTAAGATCAACGA 57 19418542 19418563 CATACCAATTGACCTTAGTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Pax FBgn0041789 FBtr0100449,FBtr0081211,FBtr0081213,FBtr0081212,FBtr0081210 2 5 6 98 2L 19410546 19410564 CAAACATCAAGCTCTGCAG 59 19410400 19410485 TAGTGCTCTTGATACACCTG 58 NA Drosophila melanogaster 50 CG10641 FBgn0032731 FBtr0081185 3 1 1 80 2L 18986729 18986747 AAGTGGTCAACGTCTACAC 59 18978765 18986688 CGTATGTATTGAAGGTCTTCTG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31780 FBgn0051780 FBtr0080758 1 1 1 60 2L 15696224 15696244 ACCTAGGATGTGTTTCAACTG 59 15696263 15696514 CTAGGCTCCTTGATTATTAGGT 58 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11864 FBgn0028944 FBtr0080784 2 1 1 162 2L 15613070 15613141 TGAAGATGATGCATTTGCC 58 15612926 15612944 CAAGTGAACGGTATTGCAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32971 FBgn0052971 FBtr0114463 2 1 3 184 2L 14274926 14277316 CTTGACCAATCTCAGTGGA 58 14277525 14277543 GGACGTTATCCTTTAGCTG 57 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG32972 FBgn0028905 FBtr0080599,FBtr0080600 2 2 2 131 2L 14164509 14164588 AATGATGTGACTCTCACCAC 59 14164397 14164415 CTGCAGGATATCTCCAACG 59 NA Drosophila melanogaster 50 aret FBgn0000114 FBtr0080345,FBtr0080347,FBtr0080344,FBtr0080346 3 4 4 122 2L 12298741 12298823 ATTAAAGTGACCCTGAGCC 59 12298909 12298927 GAGATTGGCCTGAATTTGC 59 NA Drosophila melanogaster 50 rho-6 FBgn0032415 FBtr0080360 2 1 2 111 2L 12131373 12131391 GATCTTCAAACCGGAATGG 58 12131054 12131299 ACCTATAAAGCACTGAAAGC 57 NA Drosophila melanogaster 50 CG6192 FBgn0032341 FBtr0080230 1 1 1 80 2L 11105258 11105278 CGCGAGTACTATAATAAGCAG 58 11105130 11105216 AAAGTTTCTTGCTGCTTGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG8086 FBgn0032010 FBtr0079620,FBtr0079623,FBtr0079621 1 3 4 89 2L 8252657 8252675 CTCCAACTGTTAGGATCGG 59 8252525 8252604 CTTTGCTGCCTATCAAGGT 59 NA Drosophila melanogaster 50 CG14535 FBgn0031955 FBtr0079564 1 1 1 109 2L 7847877 7847895 TATCAGCTCTGAGTCACTG 58 7847646 7847805 CAGCTGATCAAATTGTTGTC 57 NA DesignNoJunction Drosophila melanogaster 50 CG5171 FBgn0031907 FBtr0079440,FBtr0079439,FBtr0114588 2 3 3 72 2L 7404147 7404232 ATGAAGATGCCATGAGAGTG 59 7404267 7404285 GTTTGAATCTGGGCATCAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG34174 FBgn0085203 FBtr0112365 2 1 1 62 2L 2214840 2214860 CCGAAAGATATGAGAAGGAGG 59 2214884 2215031 TCGAGTGAGCAATGTTACC 59 NA DesignNoJunction Drosophila melanogaster 50 CG11723 FBgn0031391 FBtr0077852 1 1 1 89 2L 2146810 2146900 TAATGCAGCAGGATGTCTC 59 2146739 2146757 GTTTCTGCTGTATCTTGCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG3876 FBgn0031284 FBtr0078039 3 1 1 84 2L 818626 818705 AGTCTATACTTTCTTCGCGT 58 818561 818579 GTAGAAGTCCCAGTAGGAG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR31914 FBgn0051914 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 e(y)1 FBgn0000617 FBtr0074463 2 1 1 65 X 17736311 17736329 ATAAGGCCAAGATCAGTGC 59 17736358 17736376 GGATGGACATGATCACCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG32572 FBgn0052572 FBtr0074324 1 1 1 115 X 16620590 16620667 TATATGCCAAAGTGGCTAGC 59 16620745 16620763 TTAGTTCACTTTGTGGCCT 59 NA Nonspecific Drosophila melanogaster 50 Myb FBgn0002914 FBtr0074171,FBtr0074170,FBtr0074172,FBtr0074169 1 4 5 82 X 15749875 15749893 GGTCTATAATCGCGTTGGA 59 15749747 15749829 GTCCAAGTTGACTCTTGTG 58 NA Drosophila melanogaster 50 CG9281 FBgn0030672 FBtr0074057,FBtr0074056 3 2 2 81 X 15601694 15601780 GTGATTATGGTTCAGAACGT 57 15601632 15601650 GATCAATTCCGAACTCCAG 57 NA Drosophila melanogaster 50 ras FBgn0003204 FBtr0071496,FBtr0071494,FBtr0071495 3 3 3 90 X 10641989 10642007 CTACCCTATTTGGAGTGCG 59 10642057 10642150 GGCCATTATAGATCATATCCCTC 59 NA Drosophila melanogaster 50 alpha-Man-I FBgn0010338 FBtr0071476,FBtr0071473,FBtr0071479,FBtr0071478,FBtr0071477,FBtr0071475 3 6 7 170 X 10173218 10217611 GAAGGTCAAAGAGATGATGG 57 10173067 10173085 AGTCCCATAATGTACAGGG 58 NA Drosophila melanogaster 50 CG12065 FBgn0030052 FBtr0071215,FBtr0071214 1 2 4 91 X 8480265 8480589 ATACACCACAGTCGATTCC 59 8481291 8481311 GAGTATACACATTCGATTCGC 58 NA Drosophila melanogaster 50 SK FBgn0029761 FBtr0070768,FBtr0112951,FBtr0070770,FBtr0070765,FBtr0070767,FBtr0070769,FBtr0070766 3 7 7 81 X 5270146 5270164 GGAACAGATCTCATCTGGA 58 5270207 5272344 TTCCATATACCTAGGGTAGTC 57 NA Drosophila melanogaster 50 CG3588 FBgn0025643 FBtr0070548,FBtr0100550,FBtr0070549,FBtr0070547 3 4 4 78 X 2815893 2815911 ATCTTCAGAATGGCTTCGG 59 2815953 2815971 AGATCCAAGTTGAGCAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14796 FBgn0025390 FBtr0070284 2 1 1 91 X 1448586 1448710 TCCACCTCAGATAAGAATACC 58 1448515 1448533 TGTTCTTGTTTCTGTGGTG 58 NA Drosophila melanogaster 50 CG2267 FBgn0039792 FBtr0085672 2 1 1 60 3R 26453845 26453863 AAATGTGAGCCACAAAGTG 58 26453803 26453821 TTGTCGTAAGCTTATTGGG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG7593 FBgn0039687 FBtr0085461 2 1 1 60 3R 25550495 25550513 CTCGAATCTCTGAGCTACC 58 25550453 25550474 AGATGAGTTTGAATTCCTCTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 LpR2 FBgn0051092 FBtr0113386,FBtr0113387,FBtr0113388 1 3 7 104 3R 21531749 21532018 GTCGAAGATCTGGGTATCC 58 21531663 21531681 ACTGTACCCATCTTGAGGT 59 NA Drosophila melanogaster 50 CG3744 FBgn0039240 FBtr0084726,FBtr0084725,FBtr0084727 2 3 3 85 3R 20700371 20700443 GATACAATTCTGGGCTGCT 59 20700304 20700322 GTTCTGTGGACAAATCTGC 59 NA Drosophila melanogaster 50 CG17838 FBgn0038826 FBtr0113256,FBtr0083960,FBtr0083963,FBtr0083958,FBtr0083961 3 5 8 85 3R 16624055 16624075 TCCTAGCATAATGTCCTTGAC 59 16624122 16631677 TACCGACTACGTATTCACG 58 NA Drosophila melanogaster 50 H FBgn0001169 FBtr0083916,FBtr0083914,FBtr0083915,FBtr0083917 3 4 4 172 3R 16452160 16452178 GTAGTACCGACCAAATGTC 57 16452313 16452498 CAGATTCAGTGGTAAGTCTG 57 NA Drosophila melanogaster 50 fru FBgn0004652 FBtr0083640,FBtr0083646,FBtr0083651,FBtr0083641,FBtr0083647,FBtr0083649,FBtr0083644,FBtr0083643,FBtr0083652,FBtr0083645,FBtr0083648,FBtr0083650,FBtr0083642 3 13 13 131 3R 14261181 14261201 ATGTCAGATACTCAGAGATGC 59 14260763 14260781 TGTTATCTGTGAGACCACG 59 NA DesignNoJunction Drosophila melanogaster 50 fru FBgn0004652 FBtr0083650 2 1 13 97 3R 14303853 14303874 GAAAGATACAGATACTTTGCCC 58 14261504 14303797 GTGTTGTACCTTGTCATTTCC 59 NA InUTR Drosophila melanogaster 50 Sap47 FBgn0013334 FBtr0083208,FBtr0083211,FBtr0083207,FBtr0083206,FBtr0083210,FBtr0083204 3 6 8 198 3R 11782022 11785052 GACTGATGAGGAACAATGG 57 11785214 11785232 CTCCCAATCGTTGTTAGTC 57 NA Drosophila melanogaster 50 Abi FBgn0020510 FBtr0112896,FBtr0082910 1 2 2 97 3R 9946183 9946424 ATCAACAGGAATCACTTCAG 57 9946105 9946123 AAGTCTTGATGCTCATCCT 58 NA Drosophila melanogaster 50 CG9918 FBgn0038201 FBtr0100131 3 1 1 71 3R 9926421 9926528 ATAATGCAGAATCCGACGA 58 9926368 9926386 TTAGTTGACTTGGACACCG 59 NA Nonspecific, DesignRelaxed Drosophila melanogaster 50 CG14720 FBgn0037940 FBtr0082428 1 1 1 60 3R 7537744 7537764 CCCTATGGAGCATTATATCGT 58 7537786 7537804 TGTTCTCGATGACCATCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 pros FBgn0004595 FBtr0089720,FBtr0089719,FBtr0089718 3 3 3 84 3R 7203836 7203854 TCAAGATGTACTTCCCGGA 59 7203900 7217259 TAGAATTCTCGGAAGTTCGAG 59 NA Drosophila melanogaster 50 CG33937 FBgn0053937 FBtr0091947,FBtr0091946 1 2 2 60 3R 5183234 5183252 AATAGATTCTCACTCGGCC 58 5183276 5183294 ACCGTCAACTGTACAACTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 HP1e FBgn0037675 FBtr0082016 3 1 1 60 3R 5147703 5147722 CGATGAAGATAATACCTGGG 57 5147744 5147763 CGAATCAATAAGTGAATGGC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15594 FBgn0037421 FBtr0078604,FBtr0078603 1 2 2 60 3R 2113814 2113834 TACAACCATCGCTATAACGAG 59 2113853 2113874 GAGGATTCGGTTTGTAATTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Cpr78Cc FBgn0037069 FBtr0078338 1 1 1 88 3L 21293913 21293931 CTACCAATACGCCTTCGAG 59 21293983 21294001 AGATGTAAGAGCTGCTTCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12983 FBgn0037040 FBtr0114618 2 1 4 94 3L 20959293 20959313 AACCATAGAAAGGGTACAGAG 58 20959154 20959240 CATTAGGAATCTTATCCAGCTC 58 NA Drosophila melanogaster 50 CG10738 FBgn0036368 FBtr0075805 1 1 2 132 3L 13458085 13458162 TCATCGCTATCACAGTGAC 59 13458258 13458276 AATACTTTGGCAGGACAGG 59 NA Drosophila melanogaster 50 ATPsyn-b FBgn0019644 FBtr0076405 2 1 2 138 3L 9723626 9723644 GATCTACGTCATGGAGCAC 59 9723838 9723856 CTCCTTCCACTCAGATTCG 59 NA DesignNoJunction Drosophila melanogaster 50 CG32373 FBgn0052373 FBtr0076806,FBtr0076805 1 2 2 80 3L 7750857 7750940 CTGTAATGATATCGACGAGTG 58 7750980 7751000 CATATGAATTCACCAGGAAGG 58 NA Drosophila melanogaster 50 CG8596 FBgn0035767 FBtr0076881 2 1 1 82 3L 7336703 7336778 ACCTCAACAAGCTAGATCC 58 7336639 7336657 GAAGATCATTTGTCCCAGC 58 NA Drosophila melanogaster 50 CG34413 FBgn0085442 FBtr0112685,FBtr0112684,FBtr0112683,FBtr0112686 3 4 4 81 2R 20770530 20770605 CTTCCTGCAAGTGATAACG 58 20770649 20770668 AAAGTTCACTAGGATAGGCG 59 NA Drosophila melanogaster 50 CG11206 FBgn0034720 FBtr0113107 1 1 4 119 2R 18226396 18226414 CATCCTTCTCTGGTGACAC 59 18225407 18226313 AAATAAGGTATCGTGCGGG 59 NA Drosophila melanogaster 50 CG34123 FBgn0083959 FBtr0114580,FBtr0114579,FBtr0110833,FBtr0113485 3 4 6 80 2R 11152369 11152389 TATATGATTCTGGAGGGACTG 58 11152248 11152328 TATGGATACACCAATCTCGA 57 NA Drosophila melanogaster 50 Spt-I FBgn0086532 FBtr0087731,FBtr0087729,FBtr0087730 1 3 3 88 2R 9057266 9057284 TCATCGACGAAAGCATCTC 59 9057336 9057409 ATCGACTTCATCACGATCG 59 NA Drosophila melanogaster 50 CG17574 FBgn0033777 FBtr0113077,FBtr0113078 1 2 4 131 2R 8744949 8744968 AATGTTGGCTACACAATCAG 58 8737633 8737651 AGTTACGTAGGCATTGCTC 59 NA DesignNoJunction Drosophila melanogaster 50 Galpha49B FBgn0004435 FBtr0087834,FBtr0087829,FBtr0087831,FBtr0087833,FBtr0087830,FBtr0087835 2 6 8 109 2R 8504609 8504628 CTGCATATTTACCCACTGAG 58 8504697 8505312 GACGTCTACCATTCTAAATCTG 58 NA Drosophila melanogaster 50 CG18812 FBgn0042135 FBtr0088936,FBtr0088937,FBtr0088935 2 3 3 88 2R 3607185 3607203 CGAACAACTATCCATCGCT 59 3607049 3607068 GATATAGAAGGCCTTCAGGT 58 NA DesignNoJunction Drosophila melanogaster 50 CG10188 FBgn0032796 FBtr0081282 1 1 2 149 2L 19506351 19507497 CACTGGAGGTATTTCGACC 59 19506220 19506240 TCCTTGGCTATAATTGAGCTC 59 NA Drosophila melanogaster 50 hk FBgn0001202 FBtr0081180 2 1 1 78 2L 19032466 19032484 AACAAGATACCGATCTGCT 58 19032353 19032371 TTCAGTGTGGTCACTTCAG 59 NA DesignNoJunction Drosophila melanogaster 50 bru-2 FBgn0043904 FBtr0080353,FBtr0080352,FBtr0110957,FBtr0080351 2 4 4 138 2L 12385726 12389193 ATTGGAGCTATAAAGGCCC 59 12389295 12389313 TATTGATGCCACAGAATGC 58 NA Drosophila melanogaster 50 Or33a FBgn0026392 FBtr0080278 2 1 1 60 2L 11934889 11934907 TTGGTAGCTGCTATATCGG 58 11934928 11934949 GACCAGTACTAAATAAACCAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4988 FBgn0032372 FBtr0080254 3 1 1 60 2L 11695184 11695202 TAAACCTGACTAGGAACGT 57 11695312 11695330 TCGAATCCCAAGAATCCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6206 FBgn0027611 FBtr0080030 2 1 2 85 2L 10459504 10459886 GACAAGTTGATACGATATGGC 58 10459933 10459951 TTCAGATAGCACGATGGAG 58 NA Drosophila melanogaster 50 CG4995 FBgn0032219 FBtr0079989,FBtr0079990 2 2 3 240 2L 10322827 10323681 ATGATAAGGATCCCTACCG 57 10323953 10323971 TCTCTTTGCACTATCGTCC 59 NA DesignRelaxed Drosophila melanogaster 50 CG31639 FBgn0051639 FBtr0079208,FBtr0079207 2 2 2 112 2L 6154021 6154656 AATTTAATACCAGCTCGGAC 57 6153928 6153946 GATTTCCATCTGCCTTTCC 58 NA Nonspecific, DesignRelaxed, InUTR Drosophila melanogaster 50 Rtnl1 FBgn0053113 FBtr0079043,FBtr0079042,FBtr0079038,FBtr0079040,FBtr0079044,FBtr0079041,FBtr0079039 1 7 7 111 2L 4994867 4994885 CTACTTGTCGCTCCTAACC 59 4994704 4994794 CTCCAGGTAATCCTTAAAGGG 59 NA Drosophila melanogaster 50 CG14621 FBgn0031183 FBtr0077344 2 1 1 155 X 21847816 21847899 AAAGGTTCTCAAGGACACC 59 21848371 21848392 GCAATAACTCGATAGTCTAGGT 59 NA DesignNoJunction Drosophila melanogaster 50 CG11190 FBgn0030035 FBtr0071175 3 1 1 96 X 8300893 8300911 TAGTGGTTCGTCCATTGTC 59 8300607 8300835 TGGGTGTGGTAAAGATTATCC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG11596 FBgn0023522 FBtr0070318,FBtr0070320 2 2 3 175 X 1823042 1823060 TCCATTCGATGAAGCTGAC 59 1823198 1823290 TATCCTTCAGCTCGAAATCG 59 NA Drosophila melanogaster 50 CG40928 FBgn0085537 FBtr0113950 2 1 1 66 U 8956156 8956174 AGTGCCATTGATACCTCAC 59 8956204 8956306 ACTTAACTAGCCAATCCCA 57 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG40794 FBgn0085518 FBtr0113931 1 1 1 70 U 7804605 7806219 AAACGAGAACGAGAATCGT 59 7804553 7804571 ACAATCGATAGTGGCTCAG 59 NA Nonspecific, DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1890 FBgn0039869 FBtr0085836 2 1 1 85 3R 27569554 27569627 GAGAAGACTGCAGAAGGAG 59 27569673 27569694 CCTTCTTATACGAATCTGTCTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG18410 FBgn0039226 FBtr0084741 1 1 1 250 3R 20625025 20625099 AAGAGTCCTGACAATGACC 58 20624248 20624266 CAATCAATCCCTTGATGGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG7518 FBgn0038108 FBtr0082697,FBtr0082696 1 2 2 100 3R 8825930 8826123 TGCTGACATACATTCTGGAC 59 8826186 8826204 GAACTTTCGCAGGAAATCG 59 NA Drosophila melanogaster 50 CG9427 FBgn0037721 FBtr0082104 2 1 1 110 3R 5451275 5451397 TGATCAGTGTGCCAATGAG 59 5451183 5451201 CTGTACTGTTTGGTCACCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG12355 FBgn0040805 FBtr0075606 2 1 2 284 3L 15486663 15487040 CGTACAAATGGTTAGATCGC 59 15486260 15486281 CCCAAATCAATCCACAAATACC 59 NA DesignNoJunction, InUTR Drosophila melanogaster 50 CG9826 FBgn0034784 FBtr0071894 3 1 2 142 2R 18729517 18729535 CACCATTGGTAGTTCCCTG 59 18729641 18729740 GATTGTGCTTATCAGCCAC 58 NA DesignNoJunction Drosophila melanogaster 50 Or49a FBgn0033727 FBtr0087918 3 1 1 64 2R 8281978 8281996 CAGTTCTACGTTGTCAGCT 59 8282022 8282096 GCCTTGGCTAAATTTGTACTC 59 NA DesignNoJunction Drosophila melanogaster 50 CG10859 FBgn0032520 FBtr0080522 3 1 1 125 2L 13396963 13396981 GATGGAACAATGCTAACCG 58 13396792 13396875 TATCTCCCGTTCAAACATCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG10399 FBgn0031877 FBtr0079351 1 1 1 142 2L 6960470 6960547 CTTGCACTTACAGCAAAGC 59 6960653 6960671 GACAATTGGTTGATCAGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 tRNA:CR32324 FBgn0052324 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me18S-A28a FBgn0063386 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snoRNA:Me28S-G3255b FBgn0082927 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 snmRNA:430:CR33740 FBgn0053740 - 0 0 0 0 - 0 0 - 0 0 0 - 0 NA No primers Drosophila melanogaster 50 CG41352 FBgn0083994 FBtr0111195 1 1 1 60 X 22319142 22319162 CAATAGCACAGGATCAAAGAC 59 22319183 22319202 GTTTACATTTCCCATTTGCC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG14615 FBgn0031184 FBtr0077369 3 1 1 62 X 21849845 21849863 ATTGTCGCTACTAACTGGC 59 21849801 21849819 CAGATCTTTCTGGTACCCG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12565 FBgn0031180 FBtr0077214,FBtr0077215 3 2 2 197 X 21312772 21313457 ACTGCATTGATCTTACCGT 58 21312593 21312612 GCTTGAAACCGATACATACC 58 NA Drosophila melanogaster 50 waw FBgn0024182 FBtr0100536 1 1 1 80 X 21241685 21241706 TTCCTCATATTCTGCAAGAGAC 59 21241746 21241835 TATCTTTGTAATGGCACGGT 59 NA Nonspecific, InUTR Drosophila melanogaster 50 Pros45 FBgn0020369 FBtr0077189 1 1 1 60 X 21187422 21187585 ATGCTAAAGTTCGGATGCT 59 21187609 21187627 ACATAGCTACCCTGTTCCT 59 NA DesignRelaxed Drosophila melanogaster 50 Nat1 FBgn0031020 FBtr0074711 1 1 1 126 X 19376302 19376320 TACGCCAACACTCATTGAG 59 19376410 19376494 ATTGATGTAGCGATCTGCC 59 NA Drosophila melanogaster 50 kek5 FBgn0031016 FBtr0074707,FBtr0074708 3 2 2 200 X 19360066 19360084 CTTCCAAGATGGACAAGAC 57 19360248 19362351 AGTGATTGGCCACATAGAC 59 NA DesignRelaxed Drosophila melanogaster 50 Cyp18a1 FBgn0010383 FBtr0074609,FBtr0074610 3 2 2 161 X 18584105 18584123 TTGAGGATCTGCAGTACCT 59 18583526 18583544 TATTGATCAGCGGGATGAC 59 NA DesignNoJunction Drosophila melanogaster 50 GalNAc-T2 FBgn0030930 FBtr0074624,FBtr0074625 2 2 2 175 X 18392027 18392045 GGTCATCAGGAACAAGGAG 59 18391428 18391446 TAATGGGCACTGTCATCAC 59 NA DesignNoJunction Drosophila melanogaster 50 os FBgn0004956 FBtr0112847 2 1 2 129 X 18201371 18201389 ATCGACTATCGCAACTTCG 59 18201185 18201278 TCAGCTGATTGAAGCTCTG 59 NA Nonspecific Drosophila melanogaster 50 wupA FBgn0004028 FBtr0074521 3 1 7 86 X 18000953 18005980 GGATTATGAGATCAACGATCTC 58 18000823 18000843 TATTTGGAGACCTTCTTCAGG 59 NA Drosophila melanogaster 50 CG8142 FBgn0030871 FBtr0074472 3 1 1 267 X 17737803 17737821 TGATCTGTTCGAGATGTCG 59 17737492 17737510 GATCTGCAGATACTCGGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG12986 FBgn0030868 FBtr0074474 3 1 1 297 X 17713595 17713613 TGTGAGCATCTTTATCGCT 59 17713316 17713334 GAATATCCTCAGGCGATGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG8326 FBgn0030851 FBtr0074486 2 1 1 68 X 17523089 17523107 GTAACATCAAGCAGTTCGC 59 17523039 17523057 CATTGGTCATGCGATTCAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4829 FBgn0030796 FBtr0074336,FBtr0112995,FBtr0112994,FBtr0074338,FBtr0074337 1 5 5 90 X 16718725 16718743 GAAGGGATACCATGTGTCG 59 16718794 16718964 CAAATAGATTTGGTACTGCTCG 59 NA Drosophila melanogaster 50 CG9911 FBgn0030734 FBtr0074243,FBtr0074241,FBtr0074242,FBtr0074244 1 4 4 80 X 16188807 16188825 AAATCTGAAGGAAGACTGC 57 16188675 16188763 ATGATAGGTGTACCTGGTG 58 NA Drosophila melanogaster 50 CG32576 FBgn0052576 FBtr0100556 1 1 2 166 X 16182013 16182032 CGGCATGATTATTGAATCCT 58 16180125 16180143 ATACTGTAGTTCGGTTGCC 59 NA DesignNoJunction Drosophila melanogaster 50 CG8117 FBgn0030663 FBtr0074050 2 1 1 67 X 15538637 15538655 TTCAGGACTCGATCAATGC 59 15538686 15538704 GCATTTGAACTGATCCGTC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG33177 FBgn0053177 FBtr0073962 3 1 1 75 X 14975706 14975725 TCGTTATGTCACTACTCACC 58 14975763 14975781 CTCAGGCGTAAATCCTCTG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9512 FBgn0030593 FBtr0073979 3 1 1 141 X 14798009 14798027 ATTGGTTCACCTCAGATCC 58 14796866 14796884 CGATCTGGAAGATCATCGG 59 NA DesignNoJunction Drosophila melanogaster 50 CG10993 FBgn0030524 FBtr0073837 1 1 1 60 X 13684595 13684613 CTCACTGTGGATCATGGAG 59 13684553 13684571 CATGAGTTCGTTTAGACGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG9940 FBgn0030512 FBtr0073844,FBtr0073845 1 2 2 80 X 13580649 13580669 GACATTAATCCTATTGGTGGG 58 13580523 13580607 GGGCAGGTTGAATTTATCC 58 NA Drosophila melanogaster 50 CkIalpha FBgn0015024 FBtr0073680,FBtr0073682,FBtr0073681 1 3 3 81 X 12550119 12550138 TGAACTATTGTCGTAGCCTG 59 12550182 12550381 GTTCTGAACAGTATGCGGA 59 NA Drosophila melanogaster 50 m FBgn0002577 FBtr0073555 2 1 1 116 X 11661126 11661212 ATTATCGAGGCGAATTCGA 58 11661292 11661310 GTGAGATCATCTTGGGTCG 59 NA Drosophila melanogaster 50 Or10a FBgn0030298 FBtr0073548 1 1 1 90 X 11310697 11310715 TATTTCGAGTTCTGTGCCC 59 11310566 11310643 CCAAGTGATCAGTGTAGGG 59 NA Drosophila melanogaster 50 CG1597 FBgn0030289 FBtr0073458 3 1 1 60 X 11241106 11241126 CATAAATCCTATCTCAGCACG 58 11241066 11241084 AGAAGAGCGTATCCTTGAG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG15199 FBgn0030270 FBtr0073473 1 1 1 85 X 11034834 11034852 CACCGATGACTATCTGCTG 59 11034706 11034724 CATAGTCGTTGGGTGAGAG 59 NA DesignNoJunction Drosophila melanogaster 50 CG2202 FBgn0030240 FBtr0073380 3 1 1 96 X 10744987 10745005 GATCTCAAGGTCCATGAGC 59 10745152 10745170 GGATCGTTAGATTGTACGC 58 NA DesignNoJunction Drosophila melanogaster 50 CG17255 FBgn0030205 FBtr0071461,FBtr0071460 1 2 2 60 X 10365931 10365952 CACAGCGTTAGATATAAATCGC 59 10365796 10365814 AGATGGTTCACTTGACTCG 59 NA DesignNoJunction Drosophila melanogaster 50 Or9a FBgn0030204 FBtr0071462 3 1 1 87 X 10353105 10353123 CGTTTACCCGTACGATCTC 59 10352961 10353056 CATGGTTACAGCACTATAGCT 59 NA Drosophila melanogaster 50 CG15313 FBgn0030173 FBtr0071418 2 1 1 77 X 9944240 9944258 TGATCGTTCATGGTCATGG 59 9944298 9944317 TAAACTTCCTGCAGTTGAGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG12065 FBgn0030052 FBtr0071217,FBtr0071215,FBtr0071214,FBtr0071216 1 4 4 95 X 8481474 8481494 ACTACACGGACTATAAGAAGC 59 8481550 8481631 GTTTCTCCTTGCTATTGCTG 59 NA Drosophila melanogaster 50 Ubc-E2H FBgn0029996 FBtr0071114,FBtr0071112,FBtr0071113 1 3 3 62 X 7983587 7983605 GCGTTGTACGATCTATCGA 59 7983543 7983561 ATTGGGATATGTGAGCAGC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpS6 FBgn0004922 FBtr0071136,FBtr0071137,FBtr0071135 2 3 3 102 X 7794175 7794193 TGAAGAAGGGTGAGAAGGA 59 7794091 7794109 CTCAAGTTGTAGAGCTTGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4593 FBgn0029929 FBtr0071009 1 1 1 123 X 6908179 6908197 AGACAATCGACGACATACC 59 6908284 6908302 TTCAGATTCTCCCACATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 RpL35 FBgn0029785 FBtr0070800,FBtr0070801 1 2 2 110 X 5567099 5567117 CAAGAATGAGTTGCTCAGC 59 5567273 5567291 ATCACAATGTAGACGCGAG 59 NA DesignNoJunction Drosophila melanogaster 50 rg FBgn0086911 FBtr0110993,FBtr0070745 3 2 2 80 X 5118235 5118253 ACCTCAATGAAGGTCAAGG 59 5118295 5118403 GGCAATCATATACCACTTTCG 59 NA Drosophila melanogaster 50 CG15912 FBgn0029712 FBtr0070677 2 1 1 60 X 4443602 4443621 ATTCTGACTTCCTACGAAGC 59 4443644 4443662 GCGGAATTTCGAAGATACC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4199 FBgn0025628 FBtr0070334,FBtr0070332,FBtr0070336,FBtr0070333 2 4 6 110 X 1965424 1965442 CAAGGAGTACAAGACCACG 59 1962396 1962414 GACATGGTTGTACTGGGAC 59 NA DesignNoJunction Drosophila melanogaster 50 CG14635 FBgn0029535 FBtr0070142 2 1 1 87 X 738956 738974 GAATATCGCTGACCTGGAC 59 739024 739043 CTGTGGCATAGAAAGATCGT 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 2 8 8 61 X 551358 551376 GGATGATGAGAGCAAGGAG 59 551401 551419 TTAGGAAATCTGCATCCCA 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 skpA FBgn0025637 FBtr0070128,FBtr0070123,FBtr0100530,FBtr0070124,FBtr0070126,FBtr0070127,FBtr0070125,FBtr0070129 1 8 8 60 X 551391 551410 CATTATCTCATGGGATGCAG 58 551433 551451 TATCAGCTCAAACAGTGTG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG4293 FBgn0024983 FBtr0100475,FBtr0070089,FBtr0100476 3 3 4 74 X 423463 423481 CAGAGAAGTACACGGAGAC 59 423349 423367 CCAGGTAAACGATCAACAG 58 NA DesignNoJunction Drosophila melanogaster 50 CG17626 FBgn0040032 FBtr0113755 3 1 2 139 U 251367 251441 AAAGCGCAGAATAGAATGC 58 251544 251607 CTTTGTGAAGGTGGTTGTG 59 NA DesignRelaxed Drosophila melanogaster 50 Caps FBgn0053653 FBtr0091630,FBtr0091631 1 2 3 99 4 1259634 1259655 GACATGGATAGAGTCTTATCAG 57 1259714 1265686 GCAAATTGTCATCAGTTCTC 57 NA Drosophila melanogaster 50 Hcf FBgn0039904 FBtr0089124,FBtr0089126,FBtr0089127,FBtr0089125 3 4 4 99 4 381551 381570 GCGATAAACATCAAAGAGCT 58 381630 382947 CGTACCACTGATTAGTAACAG 57 NA Drosophila melanogaster 50 yellow-h FBgn0039896 FBtr0089115 3 1 1 83 4 250188 250546 AAGTTTCAAGGAGTTCATGG 58 250592 250610 TACTTGGCGTACTCTTGAG 58 NA Drosophila melanogaster 50 Crk FBgn0024811 FBtr0089114 1 1 3 170 4 231301 232282 TGATCAAATCGTTTACCGC 58 232416 232493 AAATCATCTTGATCGCTGC 58 NA Drosophila melanogaster 50 CG2316 FBgn0039890 FBtr0089152,FBtr0089149,FBtr0089147,FBtr0089151,FBtr0089148,FBtr0089150,FBtr0089146 2 7 7 83 4 208987 209060 CGGATCATAGACTTACGGA 57 208922 208940 CGAAGCATGGTTTAGTCAG 58 NA Drosophila melanogaster 50 CG32000 FBgn0052000 FBtr0113417,FBtr0089449,FBtr0089448,FBtr0089451 3 4 8 101 4 159114 159132 AAGCGGCTAAAGACTAGTG 59 159195 160910 CGTAAGAGTACCAGTCTTGTC 59 NA Drosophila melanogaster 50 iab-4 FBgn0020546 FBtr0083363,FBtr0083362 2 2 2 86 3R 12677154 12677172 CTGAGGAGTGGACAATGAC 59 12681556 12681574 AGACGTGTCCTTCTATTCC 58 NA DesignNoJunction Drosophila melanogaster 50 CR33328 FBgn0053328 FBtr0082858 1 1 1 64 3R 9464688 9464707 CAGTAGAGCCACTATATCCA 57 9464643 9464661 GATTGCCTGATTGATTGCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 heph FBgn0011224 FBtr0112864,FBtr0085887,FBtr0085882,FBtr0085886,FBtr0085885,FBtr0085883,FBtr0085879,FBtr0112865,FBtr0085888,FBtr0085880,FBtr0085884,FBtr0112866,FBtr0085878,FBtr0085881 3 14 14 110 3R 27690344 27690864 TAAATGAGGAGATGGTCACG 59 27683628 27683646 TTTGTATGAGTGCCGAGTC 59 NA Drosophila melanogaster 50 Gprk2 FBgn0004834 FBtr0085788 1 1 1 117 3R 27279200 27279218 GCTACGTGATAGATCAGCA 58 27279299 27279381 ATCTCGTATTTGACCACCT 57 NA Drosophila melanogaster 50 spn-F FBgn0086362 FBtr0085760 1 1 1 60 3R 27081859 27081878 AGAACTATGAGAGCCAACAC 59 27081900 27081919 ATGTTAATTCTCTGGCTGGG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG1746 FBgn0039830 FBtr0085773,FBtr0085774,FBtr0085772 1 3 3 206 3R 27043629 27043647 AGTACTTGCGACCATTGAG 59 27042879 27042897 ATACTGTTCCGATACCAGC 58 NA DesignNoJunction Drosophila melanogaster 50 Fer2LCH FBgn0015221 FBtr0085622,FBtr0085623 3 2 3 94 3R 26214617 26214931 CACTGGAATAAACCGTCGA 59 26214987 26215007 GCAATATTCATCATCCTTGGC 59 NA InUTR Drosophila melanogaster 50 CG9682 FBgn0039760 FBtr0085617 3 1 1 96 3R 26077020 26077038 GAGGTCATCCAATATGGCC 59 26077157 26077175 CATCCATTCCAAGTTCCCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG34299 FBgn0085328 FBtr0112495 1 1 1 101 3R 26075488 26075506 CAGTGGAAAGGAATCCAGG 59 26075630 26075999 GGGTCTTCTAAATTGGATTTGC 59 NA Drosophila melanogaster 50 CG31028 FBgn0051028 FBtr0085578,FBtr0085577 1 2 2 80 3R 25994097 25994175 ATATTACATCCATAGGACACCC 58 25994038 25994059 GGATTCCAGTGACCATATAGAG 59 NA Drosophila melanogaster 50 ATPsyn-gamma FBgn0020235 FBtr0085541,FBtr0085540,FBtr0085539 1 3 3 68 3R 25574077 25574095 CAACACTAAGGTGTTCTGC 58 25574027 25574045 ATGTTCTTGCCGTACAGAC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 ppk21 FBgn0039675 FBtr0085448 2 1 1 93 3R 25491239 25491259 GAATATCAGTTCACAGAAGCC 58 25491311 25491400 GGTAATATTTGTCTTCCCTAGC 58 NA Drosophila melanogaster 50 SP1029 FBgn0040282 FBtr0085400,FBtr0085398,FBtr0085399 1 3 3 105 3R 25071030 25071112 TACAAGTTCTACCATCCGC 59 25070943 25070961 TCACGAAGTCCTTGAACTC 59 NA Drosophila melanogaster 50 CG11899 FBgn0014427 FBtr0085390 2 1 1 181 3R 25026878 25026896 AGTTTGGCGTTATCTATGC 57 25027041 25027115 CACATAGATGCCAAAGGTC 58 NA Drosophila melanogaster 50 CG11898 FBgn0039645 FBtr0085388 1 1 1 295 3R 24995771 24995789 TATCGATCATACCGCAGGA 59 24996048 24996562 GATGAGATTGTCGGTCTCG 59 NA DesignRelaxed Drosophila melanogaster 50 CG10011 FBgn0039590 FBtr0085319 3 1 1 101 3R 24435946 24435964 CATCTCTAGTCAGTCCACG 58 24435800 24435818 ATCAGATTATTGCGTGAGC 57 NA DesignNoJunction Drosophila melanogaster 50 CG12428 FBgn0039543 FBtr0085238,FBtr0085237,FBtr0085240,FBtr0085239,FBtr0085236 2 5 5 149 3R 23529755 23529773 ATCCGATGTACACCAAGAG 58 23529568 23529642 TAATGAACACAGCTTCCGA 58 NA Drosophila melanogaster 50 CG5612 FBgn0039529 FBtr0085200 2 1 1 80 3R 23449689 23449776 ATACTCGATCACTATGCCA 57 23449627 23449647 ACTCGTATAGTGACTGTACTC 58 NA Drosophila melanogaster 50 CG14259 FBgn0039483 FBtr0085104 1 1 1 78 3R 22920754 22920772 CAATCTGACTGACCTGGTG 59 22920936 22920956 GCTAAAGTCTTTCTTGCTCAC 59 NA DesignNoJunction Drosophila melanogaster 50 Rb97D FBgn0004903 FBtr0100339,FBtr0085093 1 2 9 159 3R 22699713 22699731 TCAACCACCAGCATATACG 59 22699391 22699591 CAAAGAGCATCCAATCTAGC 58 NA InUTR Drosophila melanogaster 50 CG8932 FBgn0039390 FBtr0084944 2 1 1 109 3R 21736611 21736629 CATCGTCATCTATGTGCCA 59 21737020 21737038 AATTCCGCTGAATAACCAC 58 NA DesignNoJunction Drosophila melanogaster 50 CG4685 FBgn0039349 FBtr0100571,FBtr0084891,FBtr0100570,FBtr0100569 1 4 4 192 3R 21452227 21452245 GATTCCAGCAATGCAAAGG 59 21451877 21452071 GTTTGTGCCACTTCTTGAG 59 NA Nonspecific Drosophila melanogaster 50 CG11858 FBgn0039305 FBtr0084815 2 1 1 77 3R 21088906 21088924 AACAATCCCGTGTACACAG 59 21088965 21088983 TCATTTCTTTCCCTCCACC 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Esp FBgn0013953 FBtr0084703 2 1 1 265 3R 20673093 20673950 TTATACTCACTGAAGACGGC 59 20674178 20674266 ATACAAGCCATAGGCTACG 58 NA DesignRelaxed Drosophila melanogaster 50 CG33658 FBgn0053658 FBtr0091637 3 1 1 90 3R 20666498 20666516 AAAGTCCAATGTAGTCGCC 59 20666375 20666446 TATAATGTCGTGGTTGTACGG 59 NA Drosophila melanogaster 50 CG33658 FBgn0053658 FBtr0091637 1 1 1 88 3R 20666498 20666516 AAAGTCCAATGTAGTCGCC 59 20666377 20666446 TAATGTCGTGGTTGTACGG 59 NA Drosophila melanogaster 50 CG34150 FBgn0083986 FBtr0111021 1 1 1 60 3R 20640338 20640446 AAAGAGGATGGTACAACGC 59 20640470 20640488 TTTCGATAATTGCGTCAGG 58 NA DesignRelaxed Drosophila melanogaster 50 jar FBgn0011225 FBtr0100175,FBtr0084636,FBtr0084635,FBtr0100173 2 4 6 86 3R 20079843 20080373 CCCAAACAAATTGATCAGATCC 59 20079778 20079797 TACTTCCACTTGGACAAGTC 59 NA Drosophila melanogaster 50 CG6182 FBgn0039158 FBtr0084551 1 1 1 81 3R 19988340 19988358 AAGGACATAAGGTCCTCGA 59 19988403 19988477 CGTCAAGATCCTTTACCGT 59 NA Drosophila melanogaster 50 4EHP FBgn0053100 FBtr0084587 2 1 1 81 3R 19890044 19932557 CGAAATATCCGGAGGATAGC 59 19889982 19890000 AACGTATCACGGATACGTG 59 NA Drosophila melanogaster 50 CG31451 FBgn0051451 FBtr0084500 2 1 1 106 3R 19809898 19809916 CTATCATCCCAGATTGCGT 59 19809986 19810004 CTAATCGATCCAGTGAACG 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG6784 FBgn0039074 FBtr0084411,FBtr0084412 1 2 2 61 3R 19198919 19198937 GGAACAGTACGAAAGGGAG 59 19199028 19199046 ATTCCGAACTTTGAAGGCA 59 NA DesignNoJunction Drosophila melanogaster 50 CG6726 FBgn0039049 FBtr0084349,FBtr0084348 1 2 2 92 3R 18918259 18918330 GACTCTTTGGCATCTTCGT 59 18918386 18918404 ACATAGTTCAGCTTCTCGC 59 NA Drosophila melanogaster 50 CG7029 FBgn0039026 FBtr0084312,FBtr0113270,FBtr0113271,FBtr0113269 3 4 4 93 3R 18614228 18614308 ATAGTTTCTATGCGGATCCC 59 18614364 18614382 TTGCGTTTCACTATGTCCT 59 NA Drosophila melanogaster 50 CG13409 FBgn0038926 FBtr0113264 1 1 2 122 3R 17856452 17856547 CATTGTCATATGCTGGTATGC 59 17856350 17856368 GTGAAACACCTACTGTCGT 59 NA Drosophila melanogaster 50 Caki FBgn0013759 FBtr0084161,FBtr0084163,FBtr0112872,FBtr0112873,FBtr0084162 2 5 5 80 3R 17612578 17612663 AACATAGCAGATTACGACG 57 17612516 17612534 GAAGAAGTGACCGTATAGC 57 NA Drosophila melanogaster 50 burs FBgn0038901 FBtr0084131 2 1 1 106 3R 17595582 17595658 TTATATCCAGGTTTCGGGC 59 17595728 17595746 CTTTGGGACAGAATAGCGA 59 NA Drosophila melanogaster 50 E2f FBgn0011766 FBtr0084118,FBtr0084119,FBtr0084117 1 3 3 201 3R 17449734 17449752 AGATCAACGTCTTCCTCTG 58 17449364 17449569 GGCGTTTGAAATAATCCCT 58 NA DesignRelaxed Drosophila melanogaster 50 CG7956 FBgn0038890 FBtr0100124,FBtr0110891,FBtr0084112 2 3 3 92 3R 17350158 17350177 TGAAATCTCCGTTTATGGTG 57 17350229 17350313 GAGTATAGTCTCCCTTTAATGC 57 NA Drosophila melanogaster 50 CG6475 FBgn0038886 FBtr0113260 2 1 1 113 3R 17224250 17224388 TAGTTTGGGATCTCAAGTGC 59 17224156 17224175 TGATCATCCTCGAATTTCCA 58 NA Drosophila melanogaster 50 Rlip FBgn0026056 FBtr0084002 3 1 1 77 3R 16844668 16844686 GTCTCACCGACTAATGGTG 59 16844726 16845175 GGCACATACTTTATCAGCTG 58 NA DesignRelaxed Drosophila melanogaster 50 Calx FBgn0013995 FBtr0083999,FBtr0084000,FBtr0083998 1 3 3 146 3R 16838011 16838032 CTTTGTGGTATCCATATTCGTG 59 16838138 16838225 GCGAATGTATCTGGTATGCT 59 NA Drosophila melanogaster 50 CG5191 FBgn0038803 FBtr0083907,FBtr0083906,FBtr0083904,FBtr0083908,FBtr0083905 1 5 5 101 3R 16396364 16396823 GTCGACAGGTAAATCCTCTG 59 16396887 16396905 TAATGCCCATCGCTATCAC 59 NA InUTR Drosophila melanogaster 50 CG4973 FBgn0038772 FBtr0083835 3 1 1 99 3R 15884377 15884398 TACCAAGTATGAGATTCACTCC 59 15884458 15884543 GTGCTTGCACTTTGTTACC 59 NA Drosophila melanogaster 50 CG31219 FBgn0051219 FBtr0113400,FBtr0083783 3 2 2 60 3R 15477517 15477535 GATATCGCCCTCTTACGAC 59 15477670 15477689 ATATTGGCATGATTCCTGTC 57 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 PP2AB FBgn0042693 FBtr0083553,FBtr0083552 1 2 5 80 3R 13995749 13995767 GTAGAAGGAGTAGCTCCAG 58 13995811 13997259 TTTGTTAGCCAAACTGCTC 58 NA Drosophila melanogaster 50 CG7215 FBgn0038571 FBtr0100283 1 1 1 105 3R 13991872 13992085 ATGGTGAAAGTAGGAGACTC 58 13991786 13991804 AGATGATCACCTTCTTGCC 59 NA Nonspecific, InUTR Drosophila melanogaster 50 tinc FBgn0038554 FBtr0089770,FBtr0089772,FBtr0089771,FBtr0089769 3 4 4 114 3R 13691908 13692611 CTTCCTAGCAGCTCTTGTC 59 13692689 13692707 GTAAGTGCTGTCCAATGGA 59 NA Drosophila melanogaster 50 Atg8b FBgn0038539 FBtr0083533 3 1 1 84 3R 13550370 13550388 TAAACAATGTGATCCCACC 57 13550304 13550325 GAAATGTAGAGGAAGTAGTCCT 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 alt FBgn0038535 FBtr0089413,FBtr0089412,FBtr0089415,FBtr0089417,FBtr0089414,FBtr0089416 1 6 6 163 3R 13500932 13500950 TAGCAACCACAATAGCACC 59 13500724 13500805 ATGTGTTTGTCGTCTTGGT 59 NA Drosophila melanogaster 50 CG33333 FBgn0053333 FBtr0083441 2 1 1 262 3R 13243369 13243387 CTTACGGTCAAGACCAAGG 59 13243611 13243631 GTACACATTTCCTTGACTAGC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 sds22 FBgn0028992 FBtr0083436 2 1 1 60 3R 13218200 13218218 GCAAAGATCGAGAACTTGG 58 13218242 13218260 GATTGGCCTGTAGACTGAG 59 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31418 FBgn0051418 FBtr0083432 2 1 1 60 3R 13109648 13109666 CTCCAGGAAACAGTACTGC 59 13109690 13109708 GTTGACTTGCACTTAGACG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31267 FBgn0051267 FBtr0083404 1 1 1 60 3R 12960452 12960470 GGAGGATATCGTCATGCAC 59 12960494 12960512 CAGGGCAATGTCATTATGG 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 CG31269 FBgn0051269 FBtr0113401 3 1 1 60 3R 12953383 12953401 ATACCTTCAGTACGTTCCC 58 12953425 12953443 ACAATCTTCATCGTTGCTC 58 NA DesignNoJunctionSingleExon Drosophila melanogaster 50 Ubx FBgn0003944 FBtr0083351,FBtr0083350,FBtr0083347,FBtr0083349 1 4 6 93 3R 12484785 12536291 CTGGCTAGGTACAAATGGT 58 12484710 12484728 ATGATTCGTGTGGAACTCC 59 NA Drosophila melanogaster 50 CG12753 FBgn0038427 FBtr0083315,FBtr0100643 3 2 2 80 3R 12266239 12266258 TTTCAGTAATCTGGTCTGGT 58 12266117 12266199 GATTGATGGTCTATATCTGTGC 58 NA Drosophila melanogaster 50 CG4287 FBgn0038388 FBtr0083240 1 1 1 60 3R 11788874 1178889